ProbeSet	v2Grade	v2Type	v2Best Gene Model	v2All Gene Models	v2Position	v2Marginal Match	v2UniProt	v2UniProtName	v2TAIR10	v2AtName	v2Rice	v2OsName	v2Medicago	v2MtName	v2Biological_process	v2Molecular_function	v2Cellular_component
Ptp.1.1.S1_at	A	A1TS	POPTR_0001s23140	POPTR_0001s23140 (11)	scaffold_1:22404529-22405642(-) (11)	NA	O23715	Proteasome subunit alpha type-3	AT2G27020.1	20S proteasome alpha subunit G1 	LOC_Os01g59600.2	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1.1.S1_s_at	A	A1TS	POPTR_0001s23140	POPTR_0001s23140 (11)	scaffold_1:22404015-22404170(-) (11)	NA	O23715	Proteasome subunit alpha type-3	AT2G27020.1	20S proteasome alpha subunit G1 	LOC_Os01g59600.2	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1002.1.A1_at	A	A1TS	POPTR_0016s07090	POPTR_0016s07090 (11)	scaffold_16:4937026-4937469(-) (11)	NA	Q6DW74	"Digalactosyldiacylglycerol synthase 1, chloroplastic"	AT3G11670.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g34000.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr7g084010.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.1006.1.A1_at	A	A1TS	POPTR_0015s07760	POPTR_0015s07760 (11)	scaffold_15:9057418-9057881(+) (11)	NA	Q8GYP6	Pentatricopeptide repeat-containing protein At1g18900	AT1G18900.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g44170.1	"pentatricopeptide, putative, expressed"	Medtr2g022110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1007.1.S1_at	A	A1TS	POPTR_0018s09980	POPTR_0018s09980 (11)	scaffold_18:11041204-11042069(+) (11)	NA	Q05001	NADPH--cytochrome P450 reductase	AT4G30210.1	P450 reductase 2 	LOC_Os09g38620.1	"NADPH reductase, putative, expressed"	Medtr8g129070.1	"Flavodoxin/nitric oxide synthase; Sulphite reductase [NADPH] flavoprotein, alpha chain "	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.1008.1.A1_at	A	A1TS	POPTR_0003s14300	POPTR_0003s14300 (10)	scaffold_3:14408370-14408911(+) (10)	NA	Q84TH9	Protein NLP7	AT4G24020.1	NIN like protein 7 	LOC_Os01g13540.1	"NIN, putative, expressed"	Medtr1g126970.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.101.1.S1_at	A	A1TS	POPTR_0001s44000	POPTR_0001s44000 (11)	scaffold_1:44477513-44478489(+) (11)	NA	NA	NA	AT5G54530.1	"Protein of unknown function, DUF538 "	LOC_Os07g36410.1	expressed protein	Medtr2g011040.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1010.1.A1_s_at	A	A1TS	POPTR_0001s05500	POPTR_0001s05500 (11)	scaffold_1:4219876-4220259(-) (11)	NA	Q9C690	Transcription factor bHLH122	AT1G51140.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr2g117830.2	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1011.1.S1_at	A	A1TS	POPTR_0016s06810	POPTR_0016s06810 (11)	scaffold_16:4603659-4603713(-) (11)	NA	Q54SW1	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179	AT3G11780.1	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1011.1.S1_s_at	A	A1TS	POPTR_0016s06810	POPTR_0016s06810 (11)	scaffold_16:4603934-4605279(-) (11)	NA	Q54SW1	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179	AT3G11780.1	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1012.1.S1_s_at	A	A1TS	POPTR_0015s11690	POPTR_0015s11690 (11)	scaffold_15:12253219-12253329(-) (11)	NA	Q00004	Signal recognition particle 68 kDa protein	AT5G61970.1	signal recognition particle-related / SRP-related 	LOC_Os08g23360.1	"signal recognition particle 68 kDa protein, putative, expressed"	Medtr4g152260.1	"Signal recognition particle 68 kDa protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1013.1.S1_at	A	A1MS	POPTR_0008s04730	POPTR_0008s04730 (9)	scaffold_8:2722003-2722439(+) (9)	NA	NA	NA	AT5G13590.1	unknown protein; Has 150 Blast hits to 121 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). 	NA	NA	Medtr1g146260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1020.1.S1_at	A	A1TS	POPTR_0013s07300	POPTR_0013s07300 (10)	scaffold_13:6065734-6065767(-) (10)	NA	NA	NA	AT2G44820.1	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g12480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1020.1.S1_s_at	A	A1TS	POPTR_0013s07300	POPTR_0013s07300 (9)	scaffold_13:6066064-6067746(-) (10)	NA	NA	NA	AT2G44820.1	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g12480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1022.1.S1_at	A	A1TS	POPTR_0030s00390	POPTR_0030s00390 (11)	scaffold_30:142953-144418(-) (11)	NA	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os12g42980.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.1022.1.S1_x_at	A	A1TS	POPTR_0030s00390	POPTR_0030s00390 (11)	scaffold_30:142954-144418(-) (11)	NA	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os12g42980.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.1023.1.A1_at	A	A1TS	POPTR_0006s11660	POPTR_0006s11660 (11)	scaffold_6:8882578-8882778(-) (11)	NA	NA	NA	AT2G36480.1	ENTH/VHS family protein 	LOC_Os09g39270.1	"ZOS9-20 - C2H2 zinc finger protein, expressed"	Medtr7g126610.1	"Regulation of nuclear pre-mRNA protein; Zinc finger, C2H2-type; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1023.1.A1_s_at	A	A1TS	POPTR_0006s11660	POPTR_0006s11660 (11)	scaffold_6:8882822-8883932(-) (11)	NA	NA	NA	AT2G36480.1	ENTH/VHS family protein 	LOC_Os09g39270.1	"ZOS9-20 - C2H2 zinc finger protein, expressed"	Medtr7g126610.1	"Regulation of nuclear pre-mRNA protein; Zinc finger, C2H2-type; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1025.1.A1_at	A	A1TS	POPTR_0008s09230	POPTR_0008s09230 (11)	scaffold_8:5725842-5726037(+) (11)	NA	NA	NA	AT1G13940.1	Plant protein of unknown function (DUF863) 	LOC_Os12g38870.2	expressed protein	Medtr5g046300.1	"Protein of unknown function DUF863, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1027.1.A1_at	A	A1TA	POPTR_0008s01490	POPTR_0008s01490 (10)	scaffold_8:725370-725547(-) (10)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT3G03770.2	Leucine-rich repeat protein kinase family protein 	LOC_Os07g07230.2	"protein kinase, putative, expressed"	Medtr7g103210.1	Protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.1028.1.S1_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (10)	scaffold_13:1654002-1654047(+) (10)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.103.1.S1_s_at	A	A1TS	POPTR_0005s16680	POPTR_0005s16680 (11)	scaffold_5:13680495-13681063(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT1G36070.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g26870.1	"WD-40 repeat family protein, putative, expressed"	CU651566_11.1	"Uncharacterized WD repeat-containing protein C2A9.03, related CU651566.9 58826-64265 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1030.1.A1_at	A	A1TS	POPTR_0004s15750	POPTR_0004s15750 (11)	scaffold_4:16309836-16310728(-) (11)	NA	Q8H124	"Uncharacterized protein At2g34460, chloroplastic"	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g01044.1	"isoflavone reductase, putative, expressed"	Medtr8g121780.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1030.2.A1_at	A	A1TS	POPTR_0015s13490	POPTR_0015s13490 (9)	scaffold_15:13415933-13416075(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1034.1.A1_at	A	A1TS	POPTR_0006s14570	POPTR_0006s14570 (9)	scaffold_13:4524750-4524975(-) (9)//scaffold_6:11899226-11899443(-) (11)	NA	Q6PD62	RNA polymerase-associated protein CTR9 homolog	AT2G06210.1	binding 	LOC_Os07g29360.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1035.1.S1_at	A	A1TA	POPTR_0009s07210	POPTR_0009s07210 (10)	scaffold_9:6794118-6794555(-) (10)	NA	Q9Y4W2	Protein LAS1 homolog	AT5G12220.1	las1-like family protein 	LOC_Os12g08800.1	"las1-like family protein, putative, expressed"	Medtr5g096290.1	Las1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1037.1.S1_s_at	A	A1TS	POPTR_0013s12390	POPTR_0013s12390 (11)	scaffold_13:13028959-13029486(-) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.1037.2.S1_a_at	A	A1TS	POPTR_0013s12390	POPTR_0013s12390 (11)	scaffold_13:13030385-13030712(-) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.1038.1.A1_at	A	A1TS	POPTR_0002s15880	POPTR_0002s15880 (9)	scaffold_2:11829163-11829663(-) (9)	NA	NA	NA	AT1G01770.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). 	LOC_Os07g27350.1	"atuA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1039.1.A1_at	A	A1MS	POPTR_0005s22100	POPTR_0005s22100 (11)	scaffold_5:21085121-21086977(-) (11)	NA	O50044	2-dehydro-3-deoxyphosphooctonate aldolase	AT1G79500.4	Aldolase-type TIM barrel family protein 	LOC_Os12g10784.2	"2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed"	Medtr7g092790.1	2-dehydro-3-deoxyphosphooctonate aldolase 	GO:0009058|biosynthetic process	NA	NA
Ptp.1041.1.S1_at	A	A1TS	POPTR_0001s11420	POPTR_0001s11420 (9)	scaffold_1:8894370-8895528(+) (9)	NA	NA	NA	AT1G64680.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os08g02210.2	expressed protein	Medtr3g109380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1042.1.A1_at	A	A1TS	POPTR_0003s18520	POPTR_0003s18520 (11)	scaffold_3:17571799-17573913(-) (11)	NA	NA	NA	AT1G79660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16559.1	expressed protein	Medtr2g010950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1043.1.A1_at	A	A1TS	POPTR_0003s19790	POPTR_0003s19790 (11)	scaffold_3:18423226-18423989(-) (11)	NA	Q8L7A4	Probable ADP-ribosylation factor GTPase-activating protein AGD11	AT3G07940.1	Calcium-dependent ARF-type GTPase activating protein family 	LOC_Os01g72230.1	"stromal membrane-associated protein, putative, expressed"	Medtr3g020140.1	C2; Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.1045.1.A1_at	A	A1TS	POPTR_0008s14230	POPTR_0008s14230 (11)	scaffold_8:9419911-9422021(+) (11)	NA	Q5REY7	UBX domain-containing protein 7	AT1G14570.1	UBX domain-containing protein 	LOC_Os04g57520.1	"UBX domain-containing protein, putative, expressed"	AC229689_1.1	UBX; UAS; Thioredoxin-like fold AC229689.5 4995-12311 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1046.1.A1_at	A	A1TS	POPTR_0011s05510	POPTR_0011s05510 (9)	scaffold_11:5468809-5469077(-) (9)	NA	Q2T9J0	Peroxisomal leader peptide-processing protease	AT1G28320.1	protease-related 	LOC_Os05g41810.1	"OsDegp8 - Putative Deg protease homologue, expressed"	Medtr2g017690.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1049.1.S1_at	A	A1TS	POPTR_0001s46750	POPTR_0001s46750 (11)	scaffold_1:47154847-47155352(+) (11)	NA	NA	NA	AT3G26710.1	cofactor assembly of complex C 	LOC_Os11g32320.1	"CCB1, putative, expressed"	Medtr7g097210.1	"CPLD51 protein required for cyt b6 assembly, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.105.1.S1_s_at	A	A1TS	POPTR_0005s23220	POPTR_0005s23220 (11)	scaffold_5:22053706-22054256(-) (11)	NA	Q99633	Pre-mRNA-splicing factor 18	AT1G03140.1	splicing factor Prp18 family protein 	LOC_Os07g38420.1	"pre-mRNA-splicing factor, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0008380|RNA splicing	NA	GO:0005681|spliceosomal complex
Ptp.1052.1.A1_at	A	A1TS	POPTR_0006s25960	POPTR_0006s25960 (9)	scaffold_6:24259556-24259943(-) (9)	NA	O49343	Pentatricopeptide repeat-containing protein At2g30780	AT2G30780.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06370.2	"PPR repeat domain containing protein, putative, expressed"	Medtr1g009460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1058.1.A1_s_at	A	A1TS	POPTR_0011s13910	POPTR_0011s13910 (11)	scaffold_11:16530695-16531463(-) (11)	NA	Q3U829	Uncharacterized protein KIAA0415	AT3G15160.1	unknown protein; Has 266 Blast hits to 264 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os04g53530.1	expressed protein	Medtr4g110580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1062.1.A1_at	A	A1TS	POPTR_0009s04250	POPTR_0009s04250 (11)	scaffold_9:4714775-4716075(-) (11)	NA	O04856	Serine/threonine-protein phosphatase PP1 isozyme 1	AT5G59160.3	type one serine/threonine protein phosphatase 2 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.1063.2.A1_at	A	A1TS	POPTR_0016s04070	POPTR_0016s04070 (9)	scaffold_16:2322839-2325248(-) (9)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.1063.2.A1_s_at	A	A1TS	POPTR_0016s04070	POPTR_0016s04070 (11)	scaffold_16:2325039-2325181(-) (11)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.1064.1.A1_at	A	A1TS	POPTR_0010s05180	POPTR_0010s05180 (11)	scaffold_10:6622421-6622743(-) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G60590.1	Pectin lyase-like superfamily protein 	LOC_Os01g44970.1	"polygalacturonase, putative, expressed"	Medtr5g035390.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.1065.1.S1_at	A	A1TS	POPTR_0014s00330	POPTR_0014s00330 (11)	scaffold_14:138746-139518(+) (11)	NA	NA	NA	AT3G13062.2	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os02g26860.1	"START domain containing protein, putative, expressed"	Medtr4g163310.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1066.1.A1_s_at	A	A1TS	POPTR_0001s46420	POPTR_0001s46420 (11)	scaffold_1:46809187-46809392(-) (11)	NA	Q9SA76	"Pentatricopeptide repeat-containing protein At1g30610, chloroplastic"	AT1G30610.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os01g48380.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g101620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1067.1.S1_s_at	A	A1TS	POPTR_0006s24460	POPTR_0006s24460 (11)	scaffold_6:23065235-23065669(+) (11)	NA	A4UVI1	Fatty acid desaturase 1	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	Medtr1g020170.1	Fatty acid desaturase/sphingolipid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0016491|oxidoreductase activity	NA
Ptp.107.1.S1_at	A	A1TS	POPTR_0009s10310	POPTR_0009s10310 (11)	scaffold_9:8874910-8875282(-) (11)	NA	Q9FXA4	U-box domain-containing protein 26	AT1G49780.1	plant U-box 26 	LOC_Os02g34410.1	"U-box domain-containing protein, putative, expressed"	Medtr4g130110.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.1072.1.A1_s_at	A	A1TS	POPTR_0010s18390	POPTR_0010s18390 (11)	scaffold_10:16640425-16641854(+) (11)	NA	Q941Q3	Zinc finger CCCH domain-containing protein 37	AT3G12680.1	floral homeotic protein (HUA1) 	LOC_Os01g42970.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g089530.1	"Zinc finger, CCCH-type; Sugar transporter superfamily "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.1073.1.A1_at	A	A1TS	POPTR_0010s24160	POPTR_0010s24160 (10)	scaffold_10:20507985-20508363(-) (10)	NA	Q8W571	RING-H2 finger protein ATL32	AT4G40070.1	RING/U-box superfamily protein 	LOC_Os02g45390.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1074.1.S1_at	A	A1TS	POPTR_0001s17220	POPTR_0001s17220 (10)	scaffold_1:14063757-14063973(-) (10)	NA	O14111	C2 domain-containing protein C31G5.15	AT4G25970.1	phosphatidylserine decarboxylase 3 	LOC_Os01g72940.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr2g008340.1	C2; Calcium-binding EF-hand; Phosphatidylserine decarboxylase 	GO:0008654|phospholipid biosynthetic process	GO:0004609|phosphatidylserine decarboxylase activity	NA
Ptp.1074.1.S1_s_at	A	A1TS	POPTR_0001s17220	POPTR_0001s17220 (10)	scaffold_1:14062478-14063740(-) (10)	NA	O14111	C2 domain-containing protein C31G5.15	AT4G25970.1	phosphatidylserine decarboxylase 3 	LOC_Os01g72940.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr2g008340.1	C2; Calcium-binding EF-hand; Phosphatidylserine decarboxylase 	GO:0008654|phospholipid biosynthetic process	GO:0004609|phosphatidylserine decarboxylase activity	NA
Ptp.1075.1.A1_a_at	A	A1TS	POPTR_0014s15300	POPTR_0014s15300 (11)	scaffold_14:11370877-11371118(-) (11)	NA	NA	NA	AT2G32500.1	Stress responsive alpha-beta barrel domain protein 	LOC_Os03g02020.2	"stress responsive A/B Barrel domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1077.1.A1_at	A	A1TS	POPTR_0012s05990	POPTR_0012s05990 (9)	scaffold_12:6037126-6037284(-) (9)	NA	P02723	"ADP,ATP carrier protein"	AT5G17400.1	endoplasmic reticulum-adenine nucleotide transporter 1 	LOC_Os11g43960.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g154910.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1078.1.S1_at	A	A1TS	POPTR_0004s04000	POPTR_0004s04000 (9)	scaffold_4:2829009-2829823(-) (9)	NA	Q65Z40	Wings apart-like protein homolog	AT1G11060.1	WAPL (Wings apart-like protein regulation of heterochromatin) protein 	LOC_Os10g35380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1079.1.S1_at	A	A1TS	POPTR_0016s03560	POPTR_0016s03560 (9)	scaffold_16:1906987-1908468(-) (9)	NA	Q5YLB4	"DNA gyrase subunit B, chloroplastic/mitochondrial"	AT5G04130.1	DNA GYRASE B2 	LOC_Os01g16290.1	"DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed"	Medtr7g106810.1	DNA gyrase B; ; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0005524|ATP binding	GO:0005694|chromosome
Ptp.1080.1.S1_s_at	A	A1TS	POPTR_0010s13990	POPTR_0010s13990 (11)	scaffold_10:13700265-13700460(+) (11)	NA	Q84V83	Leucoanthocyanidin reductase	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g15360.1	nmrA-like family domain containing protein	Medtr1g118020.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.1082.1.A1_a_at	A	A1TS	POPTR_0016s00310	POPTR_0016s00310 (11)	scaffold_16:46220-46289(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1082.1.A1_at	A	A1TS	POPTR_0016s00310	POPTR_0016s00310 (11)	scaffold_16:46118-46588(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1083.1.S1_at	A	A1TS	POPTR_0010s07920	POPTR_0010s07920 (11)	scaffold_10:8887625-8887666(+) (11)	NA	O22795	"50S ribosomal protein L28, chloroplastic"	AT2G33450.1	Ribosomal L28 family 	LOC_Os05g01110.1	"ribosomal protein L28 protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1085.1.A1_s_at	A	A1TS	POPTR_0005s27170	POPTR_0005s27170 (11)	scaffold_5:24949213-24949874(-) (11)	NA	Q2KIG3	Carboxypeptidase B2	AT5G42320.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os02g02710.1	"zinc carboxypeptidase family protein, putative, expressed"	NA	NA	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004181|metallocarboxypeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.1086.1.A1_at	A	A1TS	POPTR_0007s13760	POPTR_0007s13760 (11)	scaffold_7:13803207-13803623(-) (11)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr5g021420.1	"SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.1087.1.A1_at	A	A2TS	POPTR_0012s09300	POPTR_0012s09300 (11)//POPTR_0427s00200 (10)	scaffold_12:10332220-10333877(-) (11)//scaffold_427:9940-11597(-) (10)	NA	NA	NA	AT5G63160.1	BTB and TAZ domain protein 1 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr8g109870.1	"Zinc finger, TAZ-type; BTB/POZ; ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.1088.1.S1_s_at	A	A1TS	POPTR_0011s07300	POPTR_0011s07300 (11)	scaffold_11:8058453-8059064(-) (11)	NA	P25776	Oryzain alpha chain	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g068320.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.1089.1.A1_a_at	A	A1TS	POPTR_0012s01130	POPTR_0012s01130 (10)	scaffold_12:783509-783546(-) (11)//scaffold_12:783586-783622(-) (10)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr2g008380.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1090.1.S1_at	A	A1TS	POPTR_0004s20790	POPTR_0004s20790 (11)	scaffold_4:20193942-20195154(-) (11)	NA	Q9ZE28	Uncharacterized protein RP120	AT5G22350.1	Protein of unknown function (DUF1022) 	LOC_Os02g33230.1	"nucleoside-diphosphate-sugar epimerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1094.1.S1_s_at	A	A1TS	POPTR_0014s14720	POPTR_0014s14720 (11)	scaffold_14:10803421-10803742(+) (11)	NA	Q9LYT5	Probable pectinesterase/pectinesterase inhibitor 35	AT3G59010.1	pectin methylesterase 61 	LOC_Os02g54190.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.1097.1.A1_at	A	A1TS	POPTR_0009s05180	POPTR_0009s05180 (11)	scaffold_9:5330039-5330481(-) (11)	NA	Q55CD9	Probable NADH dehydrogenase	AT2G29990.1	alternative NAD(P)H dehydrogenase 2 	LOC_Os01g61410.1	"NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed"	Medtr5g079530.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.1098.1.A1_at	A	A1TS	POPTR_0008s19960	POPTR_0008s19960 (11)	scaffold_8:13790026-13791358(+) (11)	NA	P55229	"Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic"	AT5G19220.1	ADP glucose pyrophosphorylase large subunit 1 	LOC_Os03g52460.1	"glucose-1-phosphate adenylyltransferase large subunit, putative, expressed"	Medtr8g146330.1	Nucleotidyl transferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.1099.1.A1_at	A	A1TS	POPTR_0013s14050	POPTR_0013s14050 (9)	scaffold_13:14383113-14383446(+) (9)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT4G03400.1	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr2g096120.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.11.1.A1_at	A	A1TS	POPTR_0010s18060	POPTR_0010s18060 (11)	scaffold_10:16440117-16440635(-) (11)	NA	Q9SAK0	"Pentatricopeptide repeat-containing protein At1g79490, mitochondrial"	AT1G79490.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g52290.1	"PPR repeat domain containing protein, putative, expressed"	AC234703_7.1	"pentatricopeptide, related AC234703.1 43858-47785 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1102.1.S1_s_at	A	A1TS	POPTR_0012s11900	POPTR_0012s11900 (10)	scaffold_12:12253202-12253235(-) (10)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
Ptp.1105.2.A1_s_at	A	A1TS	POPTR_0013s07230	POPTR_0013s07230 (11)	scaffold_13:5938841-5938883(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.1107.1.A1_at	A	A1TS	POPTR_0002s17100	POPTR_0002s17100 (11)	scaffold_2:12880686-12881297(-) (11)	NA	Q9FFQ1	DEAD-box ATP-dependent RNA helicase 31	AT5G63630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g43120.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1108.1.A1_a_at	A	A1TS	POPTR_0015s06480	POPTR_0015s06480 (11)	scaffold_15:7347902-7348355(+) (11)	NA	Q8RWD0	Zinc finger protein CONSTANS-LIKE 16	AT1G25440.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g15330.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr4g158260.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1108.1.A1_s_at	A	A1TS	POPTR_0015s06480	POPTR_0015s06480 (11)	scaffold_15:7347246-7347740(+) (11)	NA	Q8RWD0	Zinc finger protein CONSTANS-LIKE 16	AT1G25440.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g15330.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr4g158260.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1110.1.A1_s_at	A	A1TS	POPTR_0003s05100	POPTR_0003s05100 (11)	scaffold_3:6321071-6321339(+) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.1111.1.A1_s_at	A	A1TS	POPTR_0007s13260	POPTR_0007s13260 (9)	scaffold_7:13378069-13378503(-) (9)	NA	Q9AR07	Jasmonate O-methyltransferase	AT1G19640.1	jasmonic acid carboxyl methyltransferase 	LOC_Os11g15130.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr5g020860.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.1114.1.S1_at	A	A1TS	POPTR_0006s06700	POPTR_0006s06700 (9)	scaffold_6:4852266-4853625(+) (9)	NA	Q8GW46	Axial regulator YABBY 5	AT2G26580.2	plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr8g120820.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1115.1.S1_at	A	A1TS	POPTR_0001s30800	POPTR_0001s30800 (11)	scaffold_1:29259810-29259846(+) (11)	NA	Q94C77	Receptor protein kinase-like protein At4g34220	AT4G34220.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g02250.1	"transposon protein, putative, unclassified, expressed"	Medtr7g076330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.112.2.S1_a_at	A	A1TS	POPTR_0010s12320	POPTR_0010s12320 (9)	scaffold_10:12349735-12351095(+) (9)	NA	Q9S7Z8	Auxin efflux carrier component 3	AT1G70940.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.1120.1.S1_at	A	A1TS	POPTR_0004s14890	POPTR_0004s14890 (9)	scaffold_4:15541626-15542470(-) (9)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1122.2.S1_at	A	A1TS	POPTR_0010s16010	POPTR_0010s16010 (11)	scaffold_10:15080164-15080349(-) (11)	NA	P29344	"30S ribosomal protein S1, chloroplastic"	AT5G30510.1	ribosomal protein S1 	LOC_Os03g20100.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
Ptp.1127.1.A1_at	A	A1TS	POPTR_0012s03330	POPTR_0012s03330 (11)	scaffold_12:2647223-2647776(+) (11)	NA	Q03091	Extracellular ribonuclease	NA	NA	LOC_Os02g26400.2	"nuclease, EndA/NucM family protein, expressed"	Medtr8g130270.1	Endonuclease I 	NA	GO:0004518|nuclease activity	NA
Ptp.113.1.S1_s_at	A	A1TS	POPTR_0009s13470	POPTR_0009s13470 (11)	scaffold_9:10705820-10706296(-) (11)	NA	Q8L883	Auxin transporter-like protein 5	AT2G21050.1	like AUXIN RESISTANT 2 	LOC_Os03g14080.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g097960.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1133.2.A1_a_at	A	A1TS	POPTR_0006s04960	POPTR_0006s04960 (11)	scaffold_6:3459753-3459788(-) (11)	NA	O50314	Magnesium-chelatase subunit H	AT5G13630.1	"magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) "	LOC_Os03g20700.2	"magnesium-chelatase, putative, expressed"	NA	NA	GO:0009058|biosynthetic process	NA	NA
Ptp.1134.1.S1_x_at	A	A1TS	POPTR_0001s42970	POPTR_0001s42970 (10)	scaffold_1:43043750-43045728(+) (10)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.1137.1.S1_at	A	A1TS	POPTR_0009s10520	POPTR_0009s10520 (11)	scaffold_9:9022140-9023673(+) (11)	NA	NA	NA	AT3G19220.1	protein disulfide isomerases 	LOC_Os09g28480.1	expressed protein	Medtr4g129620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.114.1.S1_at	A	A1TS	POPTR_0010s19840	POPTR_0010s19840 (11)	scaffold_10:17628320-17629688(-) (11)	NA	Q8L884	Auxin transporter-like protein 4	AT2G38120.1	Transmembrane amino acid transporter family protein 	LOC_Os01g63770.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g024670.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1140.1.A1_at	A	A1TS	POPTR_0013s00790	POPTR_0013s00790 (11)	scaffold_13:404596-405279(-) (11)	NA	O23403	"PsbP domain-containing protein 1, chloroplastic"	AT4G15510.1	Photosystem II reaction center PsbP family protein 	LOC_Os12g37710.1	"PsbP, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.1142.1.S1_at	A	A1MS	POPTR_0001s11410	POPTR_0001s11410 (10)	scaffold_1:8880225-8880511(-) (10)	NA	NA	NA	AT4G24140.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g38860.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g103890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1145.1.A1_at	A	A1TS	POPTR_0014s09840	POPTR_0014s09840 (11)	scaffold_14:7371361-7372977(+) (11)	POPTR_0002s17650 (6)	Q5U5C5	U4/U6 small nuclear ribonucleoprotein Prp31	AT1G60170.1	pre-mRNA processing ribonucleoprotein binding region-containing protein 	LOC_Os04g46890.2	"pre-mRNA-processing factor 31, putative, expressed"	Medtr7g037700.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1147.1.S1_at	A	A1TS	POPTR_0008s12220	POPTR_0008s12220 (10)	scaffold_8:7891082-7892181(-) (10)	NA	Q9ZSY2	Chaperone protein dnaJ 15	AT1G68370.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g32870.2	"heat shock protein DnaJ, putative, expressed"	Medtr1g140590.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.1148.1.S1_s_at	A	A1TS	POPTR_0001s32000	POPTR_0001s32000 (11)	scaffold_1:30444097-30444366(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1150.1.S1_at	A	A1TS	POPTR_0010s21970	POPTR_0010s21970 (11)	scaffold_10:19073277-19073705(-) (11)	NA	NA	NA	AT5G13560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). 	LOC_Os05g06980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1151.1.S1_s_at	A	A1TS	POPTR_0005s23590	POPTR_0005s23590 (11)	scaffold_5:22313537-22313813(+) (11)	POPTR_0284s00200 (7)	Q94LX1	"Chlorophyllase-1, chloroplastic"	AT1G19670.1	chlorophyllase 1 	LOC_Os10g28370.1	"chlorophyllase-2, chloroplast precursor, putative, expressed"	Medtr8g096370.1	Chlorophyllase 	GO:0015996|chlorophyll catabolic process	GO:0047746|chlorophyllase activity	NA
Ptp.1152.1.S1_s_at	A	A1TS	POPTR_0005s18350	POPTR_0005s18350 (11)	scaffold_5:16502841-16503326(-) (11)	NA	Q9SLN1	Filament-like plant protein 7	AT2G23360.1	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1153.1.A1_at	A	A1TS	POPTR_0003s05150	POPTR_0003s05150 (11)	scaffold_3:6360676-6360955(+) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009370.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.1154.1.S1_s_at	A	A1TS	POPTR_0005s22060	POPTR_0005s22060 (11)	scaffold_5:21066341-21067217(+) (11)	NA	P0C031	Ubiquitin-NEDD8-like protein RUB2	AT1G31340.1	related to ubiquitin 1 	LOC_Os06g44080.1	"ubiquitin family protein, putative, expressed"	Medtr5g100010.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1159.1.A1_a_at	A	A1TA	POPTR_0008s01230	POPTR_0008s01230 (11)	scaffold_8:599001-599110(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1159.1.A1_at	A	A1TA	POPTR_0008s01230	POPTR_0008s01230 (10)	scaffold_8:598576-599067(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.116.1.S1_s_at	A	A1TS	POPTR_0015s05130	POPTR_0015s05130 (11)	scaffold_15:5442834-5443323(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os03g51110.1	"MYB family transcription factor, putative, expressed"	Medtr6g078130.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1160.1.A1_at	A	A1TS	POPTR_0007s01230	POPTR_0007s01230 (10)	scaffold_7:671954-672714(-) (10)	NA	Q6LA43	Two-component response regulator-like APRR2	AT2G20570.1	GBF's pro-rich region-interacting factor 1 	LOC_Os06g24070.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr4g108850.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1161.1.S1_s_at	A	A1TS	POPTR_0007s12630	POPTR_0007s12630 (11)	scaffold_7:12894768-12897471(+) (11)	NA	NA	NA	AT4G36660.1	Protein of unknown function (DUF1195) 	LOC_Os07g41660.1	expressed protein	Medtr5g019780.1	Protein of unknown function DUF1195 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1162.1.A1_at	A	A1TS	POPTR_0005s11850	POPTR_0005s11850 (11)	scaffold_5:8614259-8614781(+) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	Medtr8g090220.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.1166.1.S1_at	A	A1TS	POPTR_0010s22220	POPTR_0010s22220 (10)	scaffold_10:19202489-19202828(-) (10)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g120700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1168.1.A1_at	A	A1TS	POPTR_0008s15060	POPTR_0008s15060 (11)	scaffold_8:10051260-10051451(+) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1168.2.A1_s_at	A	A1TS	POPTR_0008s15060	POPTR_0008s15060 (11)	scaffold_8:10057385-10057943(+) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1169.1.A1_at	A	A1TA	POPTR_0008s17200	POPTR_0008s17200 (11)	scaffold_8:11548768-11551654(+) (11)	NA	NA	NA	AT1G04530.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04710.1	expressed protein	Medtr1g087320.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1171.1.A1_at	A	A1TS	POPTR_0009s09370	POPTR_0009s09370 (10)	scaffold_9:8320931-8321308(+) (10)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g55450.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1172.1.S1_s_at	A	A1MS	POPTR_0014s16580	POPTR_0014s16580 (11)	scaffold_14:12668741-12668910(+) (11)	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os07g41580.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr5g103350.1	"Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone "	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.1178.1.A1_at	A	A1TS	POPTR_0006s16370	POPTR_0006s16370 (9)	scaffold_6:14308401-14309470(+) (9)	NA	Q8W593	"Probable lactoylglutathione lyase, chloroplast"	AT1G67280.1	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein 	LOC_Os05g14194.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1179.1.A1_at	A	A1TS	POPTR_0001s30330	POPTR_0001s30330 (11)	scaffold_1:28844550-28845059(+) (11)	NA	NA	NA	AT3G19553.1	Amino acid permease family protein 	LOC_Os03g37984.2	"amino acid permease family protein, putative, expressed"	Medtr5g005210.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1180.1.A1_at	A	A1TS	POPTR_0002s02820	POPTR_0002s02820 (10)	scaffold_2:1722164-1722625(-) (10)	NA	NA	NA	AT5G42520.1	basic pentacysteine 6 	LOC_Os06g04010.2	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1181.1.S1_s_at	A	A1TS	POPTR_0014s15390	POPTR_0014s15390 (11)	scaffold_14:11464276-11464599(-) (11)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT4G15440.1	hydroperoxide lyase 1 	LOC_Os02g02000.1	"cytochrome P450, putative, expressed"	Medtr2g104500.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1183.1.A1_s_at	A	A1TS	POPTR_0005s02270	POPTR_0005s02270 (11)	scaffold_5:1487793-1488092(+) (11)	NA	NA	NA	AT5G27860.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). 	LOC_Os12g36740.1	"splicing factor, arginine/serine-rich 18, putative, expressed"	Medtr7g138420.1	"zgc:136322 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1184.1.A1_a_at	A	A1TS	POPTR_0005s22580	POPTR_0005s22580 (11)	scaffold_5:21494789-21494973(-) (11)	POPTR_0002s05920 (7)	Q680C0	GDSL esterase/lipase At4g10955	AT5G50890.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g54810.1	"lipase, putative, expressed"	Medtr5g098440.1	"lipase class 3 family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1184.2.A1_at	A	A1TS	POPTR_0005s22580	POPTR_0005s22580 (11)	scaffold_5:21494423-21494690(-) (11)	NA	Q680C0	GDSL esterase/lipase At4g10955	AT5G50890.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g54810.1	"lipase, putative, expressed"	Medtr5g098440.1	"lipase class 3 family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1187.1.A1_s_at	A	A1TS	POPTR_0002s12070	POPTR_0002s12070 (11)	scaffold_2:8972388-8973046(-) (11)	NA	NA	NA	AT5G43130.1	TBP-associated factor 4 	LOC_Os02g43750.1	"transcription initiation factor, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006352|transcription initiation||GO:0006461|protein complex assembly	GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
Ptp.119.1.S1_at	A	A1TS	POPTR_0001s09850	POPTR_0001s09850 (10)	scaffold_1:7596803-7597164(-) (10)	NA	P31531	1-aminocyclopropane-1-carboxylate synthase	AT4G11280.1	1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 	LOC_Os04g48850.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr7g088850.1	Aminotransferases class-I pyridoxal-phosphate-binding site; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.1190.1.S1_at	A	A1TS	POPTR_0007s12190	POPTR_0007s12190 (11)	scaffold_7:12536869-12537348(+) (11)	NA	Q8W4F0	Protein DA1-related 1	AT4G36860.1	LIM domain-containing protein 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
Ptp.1191.1.A1_at	A	A1TS	POPTR_0018s12970	POPTR_0018s12970 (9)	scaffold_18:13434949-13435126(+) (9)	NA	O22773	"Thylakoid lumenal 16.5 kDa protein, chloroplastic"	AT4G02530.1	chloroplast thylakoid lumen protein 	LOC_Os06g49160.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed"	Medtr8g120710.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1194.1.A1_at	A	A1TS	POPTR_0016s07890	POPTR_0016s07890 (11)	scaffold_16:5720084-5720349(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.1196.1.A1_at	A	A1TS	POPTR_0002s16230	POPTR_0002s16230 (11)	scaffold_2:12145021-12145516(+) (11)	NA	Q6EVK6	ATP-dependent helicase BRM	AT2G46020.2	"transcription regulatory protein SNF2, putative "	LOC_Os02g02290.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g087810.1	"SNF2-related; Bromodomain; Helicase, C-terminal; ; "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0005634|nucleus
Ptp.1197.1.A1_at	A	A1TS	POPTR_0007s13200	POPTR_0007s13200 (10)	scaffold_7:13321756-13321985(-) (10)	NA	C6E2H7	GTP-binding protein era homolog	AT5G66470.1	RNA binding;GTP binding 	LOC_Os05g49220.2	"GTP-binding protein, putative, expressed"	Medtr5g020330.1	"GTP-binding protein, HSR1-related "	NA	GO:0003723|RNA binding||GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1198.1.A1_at	A	A1TS	POPTR_0013s07900	POPTR_0013s07900 (11)	scaffold_13:6852446-6852481(+) (11)	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity||GO:0008270|zinc ion binding	GO:0016020|membrane
Ptp.1198.1.A1_s_at	A	A1TS	POPTR_0013s07900	POPTR_0013s07900 (11)	scaffold_13:6852469-6852675(+) (11)	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity||GO:0008270|zinc ion binding	GO:0016020|membrane
Ptp.1199.1.S1_at	A	A1TS	POPTR_0006s00620	POPTR_0006s00620 (11)	scaffold_6:331086-331621(+) (11)	NA	Q651X6	Cellulose synthase-like protein E6	AT1G55850.1	cellulose synthase like E1 	LOC_Os09g30130.1	"CSLE6 - cellulose synthase-like family E, expressed"	Medtr3g079530.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.12.1.A1_at	A	A1TS	POPTR_0008s14910	POPTR_0008s14910 (11)	scaffold_8:9931814-9933724(+) (11)	NA	Q5T280	Uncharacterized protein C9orf114	AT5G19300.1	"CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). "	LOC_Os04g17064.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1200.1.A1_at	A	A1TS	POPTR_0015s02200	POPTR_0015s02200 (11)	scaffold_15:1524574-1524688(-) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
Ptp.1202.1.A1_at	A	A1TS	POPTR_0013s07300	POPTR_0013s07300 (11)	scaffold_13:6065236-6065586(-) (11)	NA	NA	NA	AT2G44820.1	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g12480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1203.1.A1_s_at	A	A1TS	POPTR_0010s16690	POPTR_0010s16690 (11)	scaffold_10:15558363-15558643(-) (11)	NA	Q8GYW9	Probable methyltransferase PMT4	AT2G03480.2	QUASIMODO2 LIKE 2 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr4g115450.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1205.1.S1_at	A	A1TS	POPTR_0001s45870	POPTR_0001s45870 (11)	scaffold_1:46371692-46372207(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1206.1.A1_at	A	A1TS	POPTR_0001s03590	POPTR_0001s03590 (11)	scaffold_1:2867121-2867397(+) (11)	NA	NA	NA	AT1G80860.1	phospholipid N-methyltransferase 	LOC_Os02g39880.1	expressed protein	Medtr4g022030.1	Phospholipid methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1208.1.A1_at	A	A1TS	POPTR_0018s05340	POPTR_0018s05340 (9)	scaffold_18:4865841-4866333(+) (9)	NA	NA	NA	AT5G07950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g11450.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.121.1.S1_s_at	A	A1TS	POPTR_0003s13370	POPTR_0003s13370 (9)	scaffold_3:13766368-13766895(-) (9)	NA	Q9FE38	Potassium transporter 3	AT4G23640.1	Potassium transporter family protein 	LOC_Os01g70940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.1210.1.A1_at	A	A1TS	POPTR_0003s12770	POPTR_0003s12770 (9)	scaffold_3:13245468-13245854(-) (9)	NA	Q55DY8	Mitoferrin	AT4G11440.1	Mitochondrial substrate carrier family protein 	LOC_Os02g44570.2	"mitochondrial carrier protein, putative, expressed"	Medtr4g149370.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1212.1.S1_at	A	A1TS	POPTR_0006s04370	POPTR_0006s04370 (11)	scaffold_6:2970260-2971819(+) (11)	NA	P74476	Peptide chain release factor 2	AT3G57190.1	"peptide chain release factor, putative "	LOC_Os05g31160.1	"peptide chain release factor 2, putative, expressed"	Medtr1g062640.1	Class I peptide chain release factor; PCRF 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
Ptp.1216.1.A1_s_at	A	A1TS	POPTR_0013s02210	POPTR_0013s02210 (11)	scaffold_13:1312163-1312505(-) (11)	NA	Q5H7P5	Mannosylglycoprotein endo-beta-mannosidase	AT1G09010.1	glycoside hydrolase family 2 protein 	LOC_Os05g32530.1	"mannosylglycoprotein endo-beta-mannosidase, putative, expressed"	Medtr1g099500.1	"Glycoside hydrolase family 2, sugar binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1217.1.S1_at	A	A1TS	POPTR_0003s17350	POPTR_0003s17350 (10)	scaffold_3:16728479-16728873(+) (10)	NA	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT2G33170.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g42700.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1218.1.A1_s_at	A	A2TS	POPTR_0006s13470	POPTR_0006s13470 (11)//POPTR_0006s13480 (11)	scaffold_6:10696154-10696976(-) (11)//scaffold_6:10704071-10704893(-) (11)	NA	Q9SF40	60S ribosomal protein L4-1	AT3G09630.1	Ribosomal protein L4/L1 family 	LOC_Os07g08330.1	"ribosomal protein L4, putative, expressed"	Medtr1g065440.1	"Ribosomal protein L4/L1e, archeabacterial like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1219.1.S1_at	A	A1TS	POPTR_0016s02570	POPTR_0016s02570 (11)	scaffold_16:1266183-1266568(-) (11)	NA	Q945B7	"Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic"	AT3G56940.1	"dicarboxylate diiron protein, putative (Crd1) "	LOC_Os01g17170.1	"magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed"	Medtr7g105140.1	Ferritin/ribonucleotide reductase-like; Ferritin-related 	NA	GO:0046872|metal ion binding	NA
Ptp.1219.2.S1_s_at	A	A2TS	POPTR_0006s02810	POPTR_0006s02810 (9)//POPTR_0016s02570 (9)	scaffold_16:1267013-1267415(-) (9)//scaffold_6:1772828-1773205(-) (9)	NA	Q945B7	"Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic"	AT3G56940.1	"dicarboxylate diiron protein, putative (Crd1) "	LOC_Os01g17170.1	"magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed"	Medtr7g105140.1	Ferritin/ribonucleotide reductase-like; Ferritin-related 	NA	GO:0046872|metal ion binding	NA
Ptp.1220.1.S1_at	A	A1TS	POPTR_0017s13070	POPTR_0017s13070 (9)	scaffold_17:13221706-13221841(-) (9)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1220.1.S1_s_at	A	A1TS	POPTR_0017s13070	POPTR_0017s13070 (11)	scaffold_17:13221871-13222094(-) (11)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1221.1.S1_at	A	A1TS	POPTR_0007s13500	POPTR_0007s13500 (11)	scaffold_7:13552520-13553230(-) (11)	NA	O23240	"D-2-hydroxyglutarate dehydrogenase, mitochondrial"	AT4G36400.2	FAD-linked oxidases family protein 	LOC_Os07g08950.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.1224.1.S1_s_at	A	A1TS	POPTR_0018s11910	POPTR_0018s11910 (11)	scaffold_18:12565212-12565360(-) (11)	NA	Q46036	Outer membrane lipoprotein blc	AT5G58070.1	temperature-induced lipocalin 	LOC_Os08g34150.1	"OsTIL-2  Temperature-induced lipocalin-2, expressed"	Medtr8g146020.1	Lipocalin; Calycin_like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1225.1.S1_at	A	A1TS	POPTR_0006s03520	POPTR_0006s03520 (11)	scaffold_6:2284672-2286675(-) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os01g16350.2	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.2	Hydroxymethylglutaryl-coenzyme A lyase active site 	NA	GO:0003824|catalytic activity	NA
Ptp.1226.1.S1_at	A	A1TS	POPTR_0014s03980	POPTR_0014s03980 (11)	scaffold_14:3165136-3165481(-) (11)	NA	Q9LN68	Probable galacturonosyltransferase-like 1	AT1G19300.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1227.1.S1_at	A	A1TS	POPTR_0009s07040	POPTR_0009s07040 (11)	scaffold_9:6681309-6682041(+) (11)	NA	Q93WX6	"Cysteine desulfurase 2, chloroplastic"	AT1G08490.1	chloroplastic NIFS-like cysteine desulfurase 	LOC_Os12g18900.1	"aminotransferase, putative, expressed"	Medtr3g105250.1	"Aminotransferase, class V; "	GO:0008152|metabolic process	NA	NA
Ptp.123.1.S1_at	A	A1TS	POPTR_0012s04000	POPTR_0012s04000 (11)	scaffold_12:3212488-3213645(-) (11)	NA	Q9M8S6	Potassium channel SKOR	AT3G02850.1	STELAR K+ outward rectifier 	LOC_Os06g14030.1	"potassium channel SKOR, putative, expressed"	Medtr5g085570.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.1231.1.S1_at	A	A1TS	POPTR_0015s07330	POPTR_0015s07330 (11)	scaffold_15:8509629-8510055(+) (11)	NA	Q9ZTP5	"Ribulose-phosphate 3-epimerase, chloroplastic"	AT5G61410.2	D-ribulose-5-phosphate-3-epimerase 	LOC_Os03g07300.1	"ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0004750|ribulose-phosphate 3-epimerase activity	NA
Ptp.1231.2.S1_s_at	A	A1TS	POPTR_0015s07330	POPTR_0015s07330 (11)	scaffold_15:8507887-8508833(+) (11)	NA	Q9ZTP5	"Ribulose-phosphate 3-epimerase, chloroplastic"	AT5G61410.2	D-ribulose-5-phosphate-3-epimerase 	LOC_Os03g07300.1	"ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0004750|ribulose-phosphate 3-epimerase activity	NA
Ptp.1234.1.S1_s_at	A	A1TS	POPTR_0019s12550	POPTR_0019s12550 (11)	scaffold_19:13605599-13606162(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G59690.1	IQ-domain 13 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1235.1.A1_s_at	A	A1TS	POPTR_0004s23530	POPTR_0004s23530 (11)	scaffold_4:22224055-22225205(+) (11)	NA	Q8BMJ2	"Leucyl-tRNA synthetase, cytoplasmic"	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os09g32650.1	"leucyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr7g006010.1	"Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.1235.2.A1_a_at	A	A1MS	POPTR_0004s23530	POPTR_0004s23530 (11)	scaffold_4:22224071-22224266(+) (11)	NA	Q8BMJ2	"Leucyl-tRNA synthetase, cytoplasmic"	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os09g32650.1	"leucyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr7g006010.1	"Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.1236.1.S1_at	A	A1TS	POPTR_0006s18890	POPTR_0006s18890 (9)	scaffold_496:4141-5948(+) (11)//scaffold_594:2028-11551(-) (11)//scaffold_6:17512444-17513043(-) (10)//scaffold_6:17592561-17602458(-) (11)//scaffold_6:17626824-17628652(-) (9)	NA	O08560	Diacylglycerol kinase zeta	AT4G30340.1	diacylglycerol kinase 7 	LOC_Os02g54650.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1237.1.A1_s_at	A	A1TS	POPTR_0012s05840	POPTR_0012s05840 (11)	scaffold_12:5661600-5661873(+) (11)	NA	Q84M92	Actin-related protein 4	AT1G18450.1	actin-related protein 4 	LOC_Os08g04280.2	"actin, putative, expressed"	Medtr5g075350.3	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.1238.1.S1_at	A	A1TS	POPTR_0009s08520	POPTR_0009s08520 (11)	scaffold_9:7775658-7777228(-) (11)	POPTR_0001s29420 (8)	P19446	"Malate dehydrogenase, glyoxysomal"	AT2G22780.1	peroxisomal NAD-malate dehydrogenase 1 	LOC_Os12g43630.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr4g121950.1	Lactate/malate dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.1239.2.S1_at	A	A1TS	POPTR_0001s12220	POPTR_0001s12220 (9)	scaffold_1:9456882-9457266(-) (9)	NA	Q8L7E3	Vacuolar-sorting receptor 7	AT1G30900.1	VACUOLAR SORTING RECEPTOR 6 	LOC_Os06g45380.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.124.1.S1_at	A	A1TS	POPTR_0014s02310	POPTR_0014s02310 (11)	scaffold_14:1964259-1964560(-) (11)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.1241.1.S1_at	A	A1TS	POPTR_0005s20770	POPTR_0005s20770 (11)	scaffold_5:19907042-19907553(+) (11)	NA	Q54M22	"2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial"	AT1G21400.1	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein 	LOC_Os12g08260.4	"dehydrogenase E1 component domain containing protein, expressed"	Medtr3g143240.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
Ptp.1243.1.S1_at	A	A1TS	POPTR_0012s09720	POPTR_0012s09720 (11)	scaffold_12:10667841-10668027(-) (11)	NA	Q08480	Adenylate kinase B	AT5G63400.1	adenylate kinase 1 	LOC_Os11g20790.1	"adenylate kinase, putative, expressed"	Medtr8g109570.1	Adenylate kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.1244.1.S1_s_at	A	A1TS	POPTR_0017s00420	POPTR_0017s00420 (11)	scaffold_17:139348-140465(+) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1246.1.A1_at	A	A1TS	POPTR_0006s06480	POPTR_0006s06480 (11)	scaffold_6:4656770-4656980(+) (11)	NA	O22845	Calmodulin-like protein 5	AT2G43290.1	Calcium-binding EF-hand family protein 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g121290.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1247.1.S1_s_at	A	A1TS	POPTR_0006s25830	POPTR_0006s25830 (11)	scaffold_6:24184327-24186020(+) (11)	NA	P46644	"Aspartate aminotransferase, chloroplastic"	AT5G11520.1	aspartate aminotransferase 3 	LOC_Os01g55540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.1250.1.S1_at	A	A1TS	POPTR_0005s04700	POPTR_0005s04700 (11)	scaffold_5:3151300-3151747(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G54610.3	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr7g140180.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1251.1.A1_s_at	A	A1TS	POPTR_0001s15510	POPTR_0001s15510 (11)	scaffold_1:12349075-12349549(+) (11)	NA	Q869R9	Myb-like protein J	AT5G47390.1	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.1252.1.S1_s_at	A	A1TS	POPTR_0004s01660	POPTR_0004s01660 (11)	scaffold_4:1002949-1003310(-) (11)	NA	Q9ZS97	"UPF0051 protein ABCI8, chloroplastic"	AT4G04770.1	ATP binding cassette protein 1 	LOC_Os01g61400.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr7g029700.1	FeS assembly protein SufB 	GO:0016226|iron-sulfur cluster assembly	GO:0005515|protein binding	NA
Ptp.1257.1.S1_at	A	A2MS	POPTR_0003s01980	POPTR_0027s00240 (11)//POPTR_0003s01980 (11)	scaffold_27:44465-44502(-) (11)//scaffold_3:1879750-1879787(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1258.1.S1_s_at	A	A1TS	POPTR_0015s07640	POPTR_0015s07640 (11)	scaffold_15:8942318-8942675(+) (11)	NA	Q02283	Homeobox-leucine zipper protein HAT5	AT3G01470.1	homeobox 1 	LOC_Os02g49700.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g113090.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.1259.1.S1_s_at	A	A1TS	POPTR_0003s05450	POPTR_0003s05450 (10)	scaffold_3:6723782-6723879(+) (10)	NA	Q94738	97 kDa heat shock protein	AT1G79930.1	heat shock protein 91 	LOC_Os01g08560.2	"DnaK family protein, putative, expressed"	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.126.1.S1_s_at	A	A1TS	POPTR_0004s11760	POPTR_0004s11760 (11)	scaffold_4:10619475-10619825(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT5G15490.1	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25690.1	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.1260.1.A1_at	A	A1TS	POPTR_0007s12060	POPTR_0007s12060 (11)	scaffold_7:12383691-12383734(+) (11)	NA	NA	NA	AT3G50830.1	cold-regulated 413-plasma membrane 2 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1260.1.A1_s_at	A	A1TS	POPTR_0007s12060	POPTR_0007s12060 (11)	scaffold_7:12382176-12383488(+) (11)	NA	NA	NA	AT3G50830.1	cold-regulated 413-plasma membrane 2 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1261.1.S1_s_at	A	A1TS	POPTR_0011s14520	POPTR_0011s14520 (9)	scaffold_11:16889915-16890238(+) (9)	NA	Q6Y2X3	DnaJ homolog subfamily C member 14	AT1G79030.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g41820.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g077040.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.1262.1.S1_s_at	A	A1TS	POPTR_0006s12740	POPTR_0006s12740 (11)	scaffold_6:9890505-9890726(+) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1264.1.S1_s_at	A	A1TS	POPTR_0008s19870	POPTR_0008s19870 (11)	scaffold_8:13712392-13712815(-) (11)	NA	Q9XIF4	Thioredoxin H7	AT1G59730.1	thioredoxin H-type 7 	LOC_Os03g58630.1	"thioredoxin, putative, expressed"	Medtr5g038930.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.1265.2.A1_s_at	A	A1TS	POPTR_0025s00500	POPTR_0025s00500 (11)	scaffold_25:211168-212613(-) (11)	NA	Q93VD3	CBL-interacting serine/threonine-protein kinase 23	AT1G30270.1	CBL-interacting protein kinase 23 	LOC_Os07g05620.2	"CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g056750.1	Protein kinase; NAF; 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1266.1.S1_a_at	A	A1TS	POPTR_0010s21370	POPTR_0010s21370 (11)	scaffold_10:18684956-18685158(+) (11)	NA	Q42540	Ubiquitin-conjugating enzyme E2 7	AT5G59300.1	ubiquitin carrier protein 7 	LOC_Os05g38550.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g078810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.1267.1.S1_x_at	A	A1TS	POPTR_0013s11710	POPTR_0013s11710 (11)	scaffold_13:12373902-12375223(-) (11)	NA	NA	NA	AT1G71950.1	"Proteinase inhibitor, propeptide "	LOC_Os05g35740.1	"subtilisin N-terminal Region family protein, expressed"	Medtr1g068620.1	"Proteinase inhibitor, propeptide "	GO:0043086|negative regulation of catalytic activity	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.127.1.S1_s_at	A	A1TS	POPTR_0013s03860	POPTR_0013s03860 (11)	scaffold_13:2517005-2517547(-) (11)	NA	P32294	Auxin-induced protein 22B	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os12g40900.1	"OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed"	AC233668_17.1	AUX/IAA protein AC233668.2 65033-67329 F EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1271.2.S1_a_at	A	A1TS	POPTR_0003s01810	POPTR_0003s01810 (11)	scaffold_3:1678577-1679286(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os07g43050.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1271.3.S1_a_at	A	A1TS	POPTR_0003s01810	POPTR_0003s01810 (11)	scaffold_3:1679909-1680694(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os07g43050.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1273.1.S1_at	A	A1TS	POPTR_0008s07370	POPTR_0008s07370 (11)	scaffold_8:4520962-4521610(-) (11)	NA	Q9SIY8	Laccase-5	AT2G40370.1	laccase 5 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr3g097050.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1274.1.S1_s_at	A	A1TS	POPTR_0015s04570	POPTR_0015s04570 (11)	scaffold_15:4745707-4745901(-) (11)	NA	Q5SMQ9	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.1275.2.S1_s_at	A	A1TS	POPTR_0018s09030	POPTR_0018s09030 (11)	scaffold_18:9905562-9905599(-) (11)	NA	Q9XEX2	Peroxiredoxin-2B	AT1G65980.1	thioredoxin-dependent peroxidase 1 	LOC_Os01g48420.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.1280.1.S1_at	A	A1TS	POPTR_0005s26900	POPTR_0005s26900 (11)	scaffold_5:24745236-24745638(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1280.1.S1_s_at	A	A1TS	POPTR_0005s26900	POPTR_0005s26900 (11)	scaffold_5:24745310-24745615(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1281.1.A1_at	A	A1TS	POPTR_0010s02280	POPTR_0010s02280 (11)	scaffold_10:2622536-2623346(-) (11)	NA	Q9JK24	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	AT5G18580.1	tonneau 2 (TON2) 	LOC_Os05g05710.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed"	Medtr8g139320.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1286.1.A1_at	A	A1TS	POPTR_0005s19180	POPTR_0005s19180 (10)	scaffold_5:17794427-17794774(-) (10)	NA	NA	NA	AT1G43130.1	like COV 2 	LOC_Os01g64780.1	"COV1, putative, expressed"	Medtr3g144480.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1286.3.S1_s_at	A	A1TS	POPTR_0006s18960	POPTR_0006s18960 (11)	scaffold_6:17747105-17747543(+) (11)	POPTR_0018s10630 (6)	P53533	Chaperone protein ClpB 1	AT5G57710.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g15230.1	"heat shock protein-related, putative, expressed"	Medtr8g127930.1	"ATP binding, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1287.1.S1_at	A	A1TS	POPTR_0012s11850	POPTR_0012s11850 (9)	scaffold_12:12219986-12220267(+) (9)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr5g084520.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1287.2.S1_s_at	A	A1TS	POPTR_0015s12470	POPTR_0015s12470 (11)	scaffold_15:12709571-12710536(+) (11)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1288.1.S1_at	A	A1TS	POPTR_0010s01850	POPTR_0010s01850 (11)	scaffold_10:2025029-2026069(-) (11)	NA	A3KPF2	Probable histone-arginine methyltransferase CARM1B	AT5G49020.1	protein arginine methyltransferase 4A 	LOC_Os07g47500.1	"histone-arginine methyltransferase CARM1, putative, expressed"	Medtr8g138750.1	Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1290.1.A1_at	A	A1TS	POPTR_0004s08450	POPTR_0004s08450 (11)	scaffold_4:6994766-6995291(+) (11)	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os03g12250.1	"atypical receptor-like kinase MARK, putative, expressed"	Medtr5g085840.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1294.1.A1_at	A	A1TS	POPTR_0010s16620	POPTR_0010s16620 (9)	scaffold_10:15519501-15519985(-) (9)	NA	Q6DKC0	Erlin-2-B	AT2G03510.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os03g30790.1	"erlin-2 precursor, putative, expressed"	Medtr4g115350.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1297.1.S1_at	A	A1TS	POPTR_0014s16320	POPTR_0014s16320 (11)	scaffold_14:12413370-12413748(-) (11)	NA	NA	NA	AT3G07760.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os12g32992.1	expressed protein	Medtr5g104940.1	Sterile alpha motif homology 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1297.2.S1_a_at	A	A1TS	POPTR_0014s16320	POPTR_0014s16320 (11)	scaffold_14:12415122-12417038(-) (11)	NA	NA	NA	AT3G07760.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os12g32992.1	expressed protein	Medtr5g104940.1	Sterile alpha motif homology 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1299.1.S1_at	A	A1TS	POPTR_0012s07020	POPTR_0012s07020 (11)	scaffold_12:7671401-7671950(-) (11)	NA	Q9LF80	Putative glycosyltransferase 3	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g32750.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
Ptp.13.1.S1_at	A	A1TS	POPTR_0015s00960	POPTR_0015s00960 (11)	scaffold_15:559694-560083(+) (11)	NA	Q84WW2	"Probable 6-phosphogluconolactonase 5, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1302.1.S1_at	A	A1TS	POPTR_0008s03860	POPTR_0008s03860 (11)	scaffold_8:2096849-2098261(+) (11)	NA	Q9GMB0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	AT2G01720.1	Ribophorin I 	LOC_Os05g23600.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed"	Medtr1g120720.1	Ribophorin I 	GO:0006486|protein amino acid glycosylation	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
Ptp.1303.1.S1_at	A	A1TS	POPTR_0016s06690	POPTR_0016s06690 (9)	scaffold_16:4508133-4508591(-) (9)	NA	NA	NA	AT2G35880.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os11g36340.1	"lymphoid organ expressed yellow head virus receptor protein, putative, expressed"	Medtr3g137120.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1305.1.S1_s_at	A	A1TS	POPTR_0008s13600	POPTR_0008s13600 (11)	scaffold_8:8959543-8959973(-) (11)	NA	P93711	Caffeoyl-CoA O-methyltransferase	AT1G67980.1	caffeoyl-CoA 3-O-methyltransferase 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
Ptp.1306.1.A1_at	A	A1TS	POPTR_0005s12850	POPTR_0005s12850 (11)	scaffold_5:9657952-9658178(+) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
Ptp.1307.1.S1_at	A	A1TS	POPTR_0007s01160	POPTR_0007s01160 (11)	scaffold_7:623208-624713(+) (11)	NA	O49453	Uncharacterized protein At4g28440	AT4G28440.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1308.1.S1_at	A	A1TS	POPTR_0007s12250	POPTR_0007s12250 (11)	scaffold_7:12570299-12570675(-) (11)	NA	Q8L3R2	Probable calcium-binding protein CML41	AT3G50770.1	calmodulin-like 41 	LOC_Os01g72530.1	"OsCML31 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g093890.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1309.1.A1_at	A	A1TS	POPTR_0014s13810	POPTR_0014s13810 (9)	scaffold_14:10098511-10100111(-) (9)	NA	O96622	Actin-related protein 2/3 complex subunit 1	AT2G30910.3	actin-related protein C1A 	LOC_Os02g57220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g064430.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1311.1.S1_s_at	A	A1TS	POPTR_0018s06710	POPTR_0018s06710 (10)	scaffold_18:6759232-6760060(+) (10)	NA	P07314	Gamma-glutamyltranspeptidase 1	AT4G29210.1	gamma-glutamyl transpeptidase 4 	LOC_Os01g05810.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr6g093830.1	Gamma-glutamyltranspeptidase 	NA	GO:0003840|gamma-glutamyltransferase activity	NA
Ptp.1312.1.S1_s_at	A	A1TS	POPTR_0009s01200	POPTR_0009s01200 (11)	scaffold_9:1381640-1381995(+) (11)	NA	Q9LFP3	Probable glycosyltransferase At5g11130	AT2G28110.1	Exostosin family protein 	LOC_Os03g01760.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.1314.1.S1_s_at	A	A1TS	POPTR_0010s15840	POPTR_0010s15840 (11)	scaffold_10:14950129-14950612(+) (11)	NA	Q96PB1	CAS1 domain-containing protein 1	AT3G06550.3	O-acetyltransferase family protein 	LOC_Os03g19970.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1315.1.S1_at	A	A1TS	POPTR_0010s19960	POPTR_0010s19960 (11)	scaffold_10:17713960-17714926(+) (11)	NA	O24412	Probable 26S proteasome non-ATPase regulatory subunit 7	AT3G11270.1	Mov34/MPN/PAD-1 family protein 	LOC_Os04g56646.1	"MEE34, putative, expressed"	Medtr3g093230.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1316.1.A1_s_at	A	A1TS	POPTR_0006s23820	POPTR_0006s23820 (11)	scaffold_6:22565455-22566164(+) (11)	NA	Q5JVF3	PCI domain-containing protein 2	AT2G19560.1	proteasome family protein 	LOC_Os09g21760.1	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1317.1.S1_s_at	A	A2TS	POPTR_0002s12570	POPTR_0002s12570 (11)//POPTR_0014s02550 (11)	scaffold_14:2130568-2131846(+) (11)//scaffold_2:9356569-9358103(+) (11)	NA	P42731	Polyadenylate-binding protein 2	AT1G49760.2	poly(A) binding protein 8 	LOC_Os08g22354.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
Ptp.1318.2.S1_s_at	A	A1TS	POPTR_0008s19950	POPTR_0008s19950 (11)	scaffold_8:13780882-13781133(-) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT3G06035.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1319.1.A1_at	A	A1TS	POPTR_0016s07500	POPTR_0016s07500 (9)	scaffold_16:5382285-5382684(+) (9)	NA	Q851L5	IAA-amino acid hydrolase ILR1-like 3	AT3G02875.1	Peptidase M20/M25/M40 family protein 	LOC_Os03g62060.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.132.1.S1_at	A	A1TS	POPTR_0005s02780	POPTR_0005s02780 (11)	scaffold_5:1783839-1784419(-) (11)	NA	Q8W5S1	Cyclin-H1-1	AT5G27620.1	cyclin H;1 	LOC_Os03g52750.2	"cyclin, putative, expressed"	Medtr1g099610.1	Cyclin-like; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1321.1.A1_s_at	A	A2TS	POPTR_0009s07860	POPTR_0009s07860 (11)//POPTR_1135s00210 (11)	scaffold_1135:6693-6883(-) (11)//scaffold_9:7293300-7293490(-) (11)	NA	Q2N2K0	"Probable phytol kinase 3, chloroplastic"	AT5G58560.1	Phosphatidate cytidylyltransferase family protein 	LOC_Os01g61560.1	"phosphatidate cytidylyltransferase, putative, expressed"	NA	NA	NA	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	GO:0016020|membrane
Ptp.1322.1.S1_at	A	A1TS	POPTR_0006s21070	POPTR_0006s21070 (11)	scaffold_6:20172384-20173320(-) (11)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1323.1.S1_at	A	A1TS	POPTR_0010s18360	POPTR_0010s18360 (9)	scaffold_10:16626181-16627112(+) (9)	NA	P50218	Isocitrate dehydrogenase [NADP]	AT1G65930.1	cytosolic NADP+-dependent isocitrate dehydrogenase 	LOC_Os05g49760.1	"dehydrogenase, putative, expressed"	Medtr2g080710.1	"Isocitrate dehydrogenase NADP-dependent, plant "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.1325.1.S1_s_at	A	A1TS	POPTR_0019s10170	POPTR_0019s10170 (11)	scaffold_19:11757479-11759082(+) (11)	POPTR_0013s10470 (6)	Q8BVQ5	Protein phosphatase methylesterase 1	AT4G10050.1	esterase/lipase/thioesterase family protein 	LOC_Os04g36620.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr5g008510.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1326.1.S1_s_at	A	A1TS	POPTR_0011s09050	POPTR_0011s09050 (11)	scaffold_11:11126560-11127041(+) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1328.1.S1_at	A	A1MS	POPTR_0025s00340	POPTR_0025s00340 (9)	scaffold_25:112321-112842(-) (9)	NA	Q6AZB8	Putative nuclease HARBI1	AT1G72270.1	CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os04g55130.1	expressed protein	Medtr8g122260.1	"AGAP006957-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1329.1.S1_s_at	A	A1TS	POPTR_0003s14550	POPTR_0003s14550 (11)	scaffold_3:14604041-14604850(-) (11)	NA	Q6N075	Major facilitator superfamily domain-containing protein 5	AT1G64650.1	Major facilitator superfamily protein 	LOC_Os03g02380.1	"major facilitator superfamily domain-containing protein 5, putative, expressed"	Medtr3g123410.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.133.1.A1_at	A	A1TS	POPTR_0003s09540	POPTR_0003s09540 (11)	scaffold_3:10856170-10858269(+) (11)	NA	Q9ZWQ7	Defender against cell death 1	AT1G32210.1	Defender against death (DAD family) protein 	LOC_Os04g32550.1	"defender against cell death 1, putative, expressed"	Medtr3g026150.1	Defender against death DAD protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.133.1.A1_s_at	A	A2TS	POPTR_0001s01950	POPTR_0003s09540 (11)//POPTR_0001s01950 (11)	scaffold_1:1427427-1429329(-) (11)//scaffold_3:10856382-10858388(+) (11)	NA	Q9ZWQ7	Defender against cell death 1	AT2G35520.1	Defender against death (DAD family) protein 	LOC_Os04g32550.1	"defender against cell death 1, putative, expressed"	Medtr3g026150.1	Defender against death DAD protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1330.1.S1_at	A	A1TS	POPTR_0019s15220	POPTR_0019s15220 (9)	scaffold_19:15782263-15782805(-) (9)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
Ptp.1331.1.A1_at	A	A1TS	POPTR_0019s04580	POPTR_0019s04580 (9)	scaffold_19:4773724-4775183(+) (9)	NA	NA	NA	AT1G08530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g24240.1	expressed protein	Medtr4g107840.1	"T27G7.21, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1336.1.S1_s_at	A	A1TS	POPTR_0005s07190	POPTR_0005s07190 (11)	scaffold_5:4836097-4838017(+) (11)	NA	Q39017	Diacylglycerol kinase 1	AT5G63770.1	diacylglycerol kinase 2 	LOC_Os12g12260.1	"diacylglycerol kinase 1, putative, expressed"	Medtr4g144130.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region; Protein kinase C, phorbol ester/diacylglycerol binding "	GO:0023033|signaling pathway||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1338.1.A1_at	A	A1TS	POPTR_0006s11690	POPTR_0006s11690 (11)	scaffold_6:8899450-8899898(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G03730.1	Protein kinase superfamily protein 	LOC_Os02g32610.3	"protein kinase domain containing protein, expressed"	Medtr3g149670.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1339.1.S1_s_at	A	A1TS	POPTR_0006s10530	POPTR_0006s10530 (11)	scaffold_6:7890728-7891199(-) (11)	NA	O80915	PRA1 family protein B4	AT2G38360.1	prenylated RAB acceptor 1.B4 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.134.2.S1_a_at	A	A1TS	POPTR_0005s10480	POPTR_0005s10480 (11)	scaffold_5:7532363-7533383(+) (11)	NA	O81788	WUSCHEL-related homeobox 13	AT4G35550.1	WUSCHEL related homeobox 13 	LOC_Os01g60270.2	"homeobox domain containing protein, expressed"	Medtr7g025190.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.1340.1.A1_at	A	A1TS	POPTR_0016s14550	POPTR_0016s14550 (10)	scaffold_16:13741555-13742049(-) (10)	NA	Q9LZV3	"Mannan endo-1,4-beta-mannosidase 6"	AT5G01930.1	Glycosyl hydrolase superfamily protein 	LOC_Os05g25480.1	"OsMan06 - Endo-Beta-Mannanase, expressed"	Medtr8g005200.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1342.1.A1_at	A	A1TS	POPTR_0010s06250	POPTR_0010s06250 (11)	scaffold_10:7662463-7663227(-) (11)	NA	NA	NA	AT1G24460.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1); Has 181008 Blast hits to 85359 proteins in 3551 species: Archae - 3290; Bacteria - 48304; Metazoa - 70793; Fungi - 13943; Plants - 10118; Viruses - 785; Other Eukaryotes - 33775 (source: NCBI BLink). 	LOC_Os02g38480.1	expressed protein	Medtr3g102910.1	"myosin-related, related "	GO:0016032|viral reproduction	NA	GO:0016020|membrane
Ptp.1344.1.A1_s_at	A	A1MS	POPTR_0001s29320	POPTR_0001s29320 (11)	scaffold_1:28037403-28037687(+) (11)	NA	Q9C5C8	"Peptide methionine sulfoxide reductase B2, chloroplastic"	AT4G21860.2	methionine sulfoxide reductase B 2 	LOC_Os05g33510.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr4g121860.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
Ptp.1346.1.A1_at	A	A1TS	POPTR_0008s02200	POPTR_0008s02200 (11)	scaffold_8:1054237-1054622(+) (11)	NA	Q99JF5	Diphosphomevalonate decarboxylase	AT3G54250.1	GHMP kinase family protein 	LOC_Os02g01920.1	"GHMP kinases ATP-binding protein, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.1348.1.S1_s_at	A	A1TS	POPTR_0011s16730	POPTR_0011s16730 (11)	scaffold_11:18510200-18511431(+) (11)	NA	Q5BQN5	WPP domain-associated protein (Fragment)	AT2G34730.1	myosin heavy chain-related 	LOC_Os09g04810.1	"myosin heavy chain-related, putative, expressed"	Medtr2g129750.1	"WPP domain associated protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1350.1.S1_at	A	A1TS	POPTR_0003s10680	POPTR_0003s10680 (10)	scaffold_3:11597128-11597636(+) (10)	NA	Q9FII5	Leucine-rich repeat receptor-like protein kinase TDR	AT5G61480.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g05290.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g117050.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1351.1.S1_a_at	A	A1TS	POPTR_0010s21340	POPTR_0010s21340 (11)	scaffold_10:18665561-18665851(+) (11)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1351.1.S1_at	A	A1TS	POPTR_0010s21340	POPTR_0010s21340 (11)	scaffold_10:18665849-18666043(+) (11)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1351.2.S1_at	A	A1TS	POPTR_0010s21340	POPTR_0010s21340 (11)	scaffold_10:18665876-18666352(+) (11)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1353.1.A1_at	A	A1TS	POPTR_0007s14730	POPTR_0007s14730 (9)	scaffold_7:14491959-14492320(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr8g102000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1355.1.S1_at	A	A1TS	POPTR_0003s13240	POPTR_0003s13240 (10)	scaffold_3:13636884-13637095(+) (10)	NA	NA	NA	AT1G63980.1	D111/G-patch domain-containing protein 	LOC_Os03g03390.1	"G-patch domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.1356.1.S1_s_at	A	A1TS	POPTR_0005s02610	POPTR_0005s02610 (11)	scaffold_5:1659263-1659484(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1359.1.A1_at	A	A1TS	POPTR_0002s19970	POPTR_0002s19970 (11)	scaffold_2:15903304-15903779(+) (11)	NA	P52424	"Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial"	AT3G55010.2	"phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) "	LOC_Os03g61600.1	"phosphoribosylformylglycinamidine synthase, putative, expressed"	Medtr4g143000.1	"Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "	NA	GO:0003824|catalytic activity	NA
Ptp.1359.2.S1_at	A	A1TS	POPTR_0002s19970	POPTR_0002s19970 (11)	scaffold_2:15900659-15901485(+) (11)	NA	P52424	"Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial"	AT3G55010.2	"phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) "	LOC_Os03g61600.1	"phosphoribosylformylglycinamidine synthase, putative, expressed"	Medtr4g143000.1	"Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "	NA	GO:0003824|catalytic activity	NA
Ptp.136.1.S1_at	A	A1TS	POPTR_0002s14540	POPTR_0002s14540 (11)	scaffold_2:10804407-10805320(-) (11)	NA	Q8VYK7	Autophagy-related protein 8f	AT4G16520.2	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1360.1.S1_s_at	A	A1TS	POPTR_0010s16070	POPTR_0010s16070 (11)	scaffold_10:15124704-15124776(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1361.2.A1_at	A	A1TA	POPTR_0008s16160	POPTR_0008s16160 (11)	scaffold_8:10798312-10798711(+) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1361.3.S1_a_at	A	A1TS	POPTR_0008s16160	POPTR_0008s16160 (11)	scaffold_8:10798578-10800676(-) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1361.3.S1_s_at	A	A1TS	POPTR_0008s16160	POPTR_0008s16160 (11)	scaffold_10:9626130-9626222(+) (11)//scaffold_8:10798603-10798695(-) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1365.1.S1_at	A	A1TS	POPTR_0002s12510	POPTR_0002s12510 (9)	scaffold_2:9298791-9299172(+) (9)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.1366.1.A1_s_at	A	A1TS	POPTR_0009s01320	POPTR_0009s01320 (10)	scaffold_9:1589821-1590278(+) (10)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1366.2.S1_s_at	A	A1TS	POPTR_0009s01320	POPTR_0009s01320 (11)	scaffold_9:1585658-1585802(+) (11)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1366.3.S1_at	A	A1MS	POPTR_0009s01320	POPTR_0009s01320 (9)	scaffold_9:1585804-1585868(+) (9)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1367.1.A1_at	A	A1TS	POPTR_0004s14060	POPTR_0004s14060 (11)	scaffold_4:14531150-14531544(+) (11)	NA	NA	NA	AT4G18400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g39594.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1367.1.A1_s_at	A	A1TS	POPTR_0004s14060	POPTR_0004s14060 (11)	scaffold_4:14531356-14531761(+) (11)	NA	NA	NA	AT4G18400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g39594.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1368.1.A1_a_at	A	A1TS	POPTR_0003s15670	POPTR_0003s15670 (11)	scaffold_3:15431928-15432259(+) (11)	NA	Q9STE8	"Protein TOC75-3, chloroplastic"	AT3G46740.1	translocon at the outer envelope membrane of chloroplasts 75-III 	LOC_Os03g16440.1	"outer membrane protein, OMP85 family, putative, expressed"	Medtr4g084320.1	"Bacterial surface antigen (D15); Chloroplast envelope protein translocase, IAP75 "	NA	NA	GO:0019867|outer membrane
Ptp.137.1.S1_s_at	A	A1TS	POPTR_0002s18750	POPTR_0002s18750 (11)	scaffold_2:14618181-14618799(+) (11)	NA	Q9M1R4	Auxin-responsive protein IAA30	AT3G62100.1	indole-3-acetic acid inducible 30 	LOC_Os02g49160.1	"OsIAA8 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g133620.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1370.1.S1_at	A	A1TS	POPTR_0007s10940	POPTR_0007s10940 (9)	scaffold_7:11137959-11138036(-) (9)	NA	NA	NA	AT5G67070.1	ralf-like 34 	NA	NA	Medtr5g017130.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1370.1.S1_s_at	A	A1TS	POPTR_0007s10940	POPTR_0007s10940 (11)	scaffold_7:11137584-11137851(-) (11)	NA	NA	NA	AT5G67070.1	ralf-like 34 	NA	NA	Medtr5g017130.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1373.1.S1_s_at	A	A1TS	POPTR_0010s13760	POPTR_0010s13760 (11)	scaffold_10:13511235-13511774(+) (11)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	AC233660_2.1	Armadillo-like helical AC233660.2 13161-17702 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1376.1.S1_at	A	A1TS	POPTR_0016s08580	POPTR_0016s08580 (11)	scaffold_16:6399581-6399989(+) (11)	NA	Q1PER6	"L-ascorbate peroxidase 2, cytosolic"	AT3G09640.2	ascorbate peroxidase 2 	LOC_Os07g49400.2	"OsAPx2 - Cytosolic Ascorbate Peroxidase encoding gene 4,5,6,8, expressed"	Medtr4g080090.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.1377.1.S1_at	A	A1TS	POPTR_0002s08260	POPTR_0002s08260 (11)	scaffold_2:5749835-5751418(+) (11)	NA	Q43116	Protein disulfide-isomerase	AT1G77510.1	PDI-like 1-2 	LOC_Os11g09280.2	"OsPDIL1-1  protein disulfide isomerase PDIL1-1, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.1377.1.S1_x_at	A	A1TS	POPTR_0002s08260	POPTR_0002s08260 (11)	scaffold_2:5749835-5751418(+) (11)	NA	Q43116	Protein disulfide-isomerase	AT1G77510.1	PDI-like 1-2 	LOC_Os11g09280.2	"OsPDIL1-1  protein disulfide isomerase PDIL1-1, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.1379.1.S1_a_at	A	A1TS	POPTR_0011s15080	POPTR_0011s15080 (11)	scaffold_11:17270057-17270091(+) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1379.1.S1_at	A	A1TS	POPTR_0011s15080	POPTR_0011s15080 (11)	scaffold_11:17270031-17270268(+) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1379.2.S1_s_at	A	A2TS	POPTR_0011s15080	POPTR_0011s15170 (11)//POPTR_0011s15080 (11)	scaffold_11:17269671-17269765(+) (11)//scaffold_11:17310940-17311034(-) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.138.1.S1_s_at	A	A1TS	POPTR_0002s10880	POPTR_0002s10880 (11)	scaffold_2:7922806-7924371(-) (11)	NA	Q38827	Auxin-responsive protein IAA9	AT5G65670.2	indole-3-acetic acid inducible 9 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g078700.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1380.1.S1_at	A	A1TS	POPTR_0010s26060	POPTR_0010s26060 (11)	scaffold_10:21434328-21434558(-) (11)	NA	NA	NA	AT1G16790.1	ribosomal protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1381.1.S1_s_at	A	A1MS	POPTR_0002s12350	POPTR_0002s12350 (11)	scaffold_2:9167347-9167814(+) (11)	NA	Q9M7N6	MFP1 attachment factor 1	AT1G47200.1	WPP domain protein 2 	LOC_Os03g11060.1	"MFP1 attachment factor 1, putative, expressed"	Medtr1g023740.1	"MFP1 attachment factor 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1383.1.A1_s_at	A	A1TS	POPTR_0002s03540	POPTR_0002s03540 (11)	scaffold_2:2200542-2200847(-) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1385.1.S1_s_at	A	A1TS	POPTR_0004s16260	POPTR_0004s16260 (9)	scaffold_4:16684121-16684153(+) (9)	NA	Q03878	Glycine-rich RNA-binding protein	AT2G21660.2	"cold, circadian rhythm, and rna binding 2 "	LOC_Os12g43600.1	"RNA recognition motif containing protein, expressed"	Medtr4g095740.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.1386.1.A1_at	A	A1TS	POPTR_0005s10980	POPTR_0005s10980 (11)	scaffold_5:7891072-7892235(+) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G66060.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr5g022950.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1387.1.S1_s_at	A	A1TS	POPTR_0006s20640	POPTR_0006s20640 (11)	scaffold_6:19662907-19663100(+) (11)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.139.1.S1_at	A	A1TS	POPTR_0016s09090	POPTR_0016s09090 (11)	scaffold_16:6991769-6991940(+) (11)	NA	P43287	Aquaporin PIP2-2	AT2G37170.1	plasma membrane intrinsic protein 2 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.1390.1.S1_at	A	A1TS	POPTR_0001s34470	POPTR_0001s34470 (11)	scaffold_1:32588431-32588496(-) (11)	NA	Q940S5	Coatomer subunit zeta-1	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.1390.1.S1_s_at	A	A1TS	POPTR_0001s34470	POPTR_0001s34470 (11)	scaffold_1:32588572-32589561(-) (11)	NA	Q940S5	Coatomer subunit zeta-1	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.1391.1.S1_s_at	A	A1TS	POPTR_0016s05200	POPTR_0016s05200 (11)	scaffold_16:3162359-3162903(+) (11)	NA	NA	NA	AT2G42320.2	nucleolar protein gar2-related 	LOC_Os09g31230.2	expressed protein	Medtr7g111110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1392.1.S1_s_at	A	A1TS	POPTR_0004s16450	POPTR_0004s16450 (11)	scaffold_4:16910159-16910193(-) (11)	NA	P46301	40S ribosomal protein S25	AT4G39200.1	Ribosomal protein S25 family protein 	LOC_Os08g44480.1	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1393.1.S1_at	A	A1TS	POPTR_0001s30780	POPTR_0001s30780 (9)	scaffold_1:29241427-29244334(-) (9)	NA	NA	NA	AT2G15290.1	translocon at inner membrane of chloroplasts 21 	LOC_Os06g43130.1	"tic21, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1393.2.S1_s_at	A	A1TS	POPTR_0009s09920	POPTR_0009s09920 (11)	scaffold_9:8677733-8677804(-) (11)	NA	NA	NA	AT2G15290.1	translocon at inner membrane of chloroplasts 21 	LOC_Os06g43130.1	"tic21, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1397.1.S1_at	A	A1TS	POPTR_0009s13270	POPTR_0009s13270 (11)	scaffold_9:10611693-10612089(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT4G38740.1	rotamase CYP 1 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.1397.1.S1_s_at	A	A1TS	POPTR_0009s13270	POPTR_0009s13270 (11)	scaffold_9:10611705-10612108(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT4G38740.1	rotamase CYP 1 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.1398.1.S1_at	A	A1TS	POPTR_0010s21100	POPTR_0010s21100 (11)	scaffold_10:18510798-18511796(-) (11)	NA	P48495	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.1398.1.S1_s_at	A	A2TS	POPTR_0008s05640	POPTR_0010s21100 (11)//POPTR_0008s05640 (11)	scaffold_10:18511100-18512958(-) (11)//scaffold_8:3276949-3278938(+) (11)	NA	P48491	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.140.1.S1_at	A	A1TS	POPTR_0013s05350	POPTR_0013s05350 (11)	scaffold_13:3826902-3830030(+) (11)	NA	O49044	Superoxide dismutase [Cu-Zn] 2	AT5G18100.1	copper/zinc superoxide dismutase 3 	LOC_Os03g11960.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr6g031060.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
Ptp.1400.1.S1_s_at	A	A1TS	POPTR_0010s16030	POPTR_0010s16030 (11)	scaffold_10:15101564-15101829(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1401.1.S1_s_at	A	A1TS	POPTR_0007s00470	POPTR_0007s00470 (11)	scaffold_7:177692-178180(-) (11)	NA	Q8LAC4	Probable uridine nucleosidase 2	AT1G05620.1	uridine-ribohydrolase  2 	LOC_Os03g31170.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr1g047060.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1403.1.A1_a_at	A	A1TS	POPTR_0001s35770	POPTR_0001s35770 (11)	scaffold_1:34118029-34118385(+) (11)	NA	Q6BSS5	Pre-rRNA-processing protein ESF2	AT3G56510.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g46760.1	"RNA recognition motif containing protein, putative, expressed"	Medtr6g022740.1	"Activator of basal transcription 1, putative "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1404.1.S1_at	A	A1TS	POPTR_0025s00670	POPTR_0025s00670 (11)	scaffold_25:336886-338172(-) (11)	NA	Q5DTI8	Extended synaptotagmin-3	AT1G05500.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os04g55220.1	"C2 domain containing protein, expressed"	Medtr8g121700.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1405.1.S1_at	A	A1TS	POPTR_0014s12320	POPTR_0014s12320 (11)	scaffold_14:9104849-9105555(+) (11)	NA	Q8LB72	Blue-light photoreceptor PHR2	AT2G47590.1	photolyase/blue-light receptor 2 	LOC_Os03g22330.1	"blue-light photoreceptor PHR2, putative, expressed"	Medtr1g108320.1	"DNA photolyase, FAD- binding N-terminal "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
Ptp.1408.1.S1_s_at	A	A1TS	POPTR_0003s17700	POPTR_0003s17700 (11)	scaffold_3:17009454-17009566(+) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1408.2.S1_at	A	A1TS	POPTR_0003s17700	POPTR_0003s17700 (10)	scaffold_3:17003939-17009668(+) (10)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1409.2.S1_at	A	A1MS	POPTR_0001s30820	POPTR_0001s30820 (11)	scaffold_1:29268340-29269199(+) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
Ptp.1411.1.S1_at	A	A1TS	POPTR_0016s13210	POPTR_0016s13210 (11)	scaffold_16:12453319-12453382(+) (11)	NA	Q8VYK6	40S ribosomal protein S4-3	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	GO:0003723|RNA binding	NA
Ptp.1411.1.S1_x_at	A	A1TS	POPTR_0016s13210	POPTR_0016s13210 (11)	scaffold_16:12453264-12453382(+) (11)	NA	Q8VYK6	40S ribosomal protein S4-3	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	GO:0003723|RNA binding	NA
Ptp.1412.1.A1_at	A	A1TA	POPTR_0015s13280	POPTR_0015s13280 (10)	scaffold_15:13302959-13304784(+) (11)	NA	NA	NA	AT3G22942.1	G-protein gamma subunit 2 	LOC_Os02g04520.1	"AGG2, putative, expressed"	Medtr1g083530.1	"AGG2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1413.1.A1_at	A	A1TS	POPTR_0019s11320	POPTR_0019s11320 (11)	scaffold_19:12643025-12643392(-) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT1G71940.1	SNARE associated Golgi protein family 	LOC_Os03g49700.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1415.1.S1_at	A	A1TS	POPTR_0011s06980	POPTR_0011s06980 (11)	scaffold_11:7710792-7711171(-) (11)	NA	Q9FK68	Ras-related protein RABA1c	AT5G45750.1	RAB GTPase homolog A1C 	LOC_Os06g35814.1	"ras-related protein, putative, expressed"	Medtr2g091780.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1416.1.A1_s_at	A	A1TS	POPTR_0002s24960	POPTR_0002s24960 (11)	scaffold_1716:141-694(+) (9)//scaffold_2:22154781-22157152(+) (11)	NA	Q38936	FK506-binding protein 2-2	AT5G48580.1	FK506- and rapamycin-binding protein 15 kD-2 	LOC_Os01g68710.2	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr8g012730.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.1419.2.S1_s_at	A	A1TS	POPTR_0010s13520	POPTR_0010s13520 (11)	scaffold_10:13350736-13351683(+) (11)	NA	P51105	Dihydroflavonol-4-reductase	AT1G68540.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g03670.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g067120.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1420.1.S1_at	A	A1TS	POPTR_0017s03020	POPTR_0017s03020 (10)	scaffold_17:2188013-2188271(-) (10)	NA	NA	NA	AT3G03341.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1422.1.S1_s_at	A	A1TS	POPTR_0001s22110	POPTR_0001s22110 (11)	scaffold_1:20743817-20743960(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G22850.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1423.1.A1_at	A	A1TS	POPTR_0018s07650	POPTR_0018s07650 (11)	scaffold_18:8252940-8253265(-) (11)	NA	Q40468	Eukaryotic initiation factor 4A-15	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os02g05330.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1424.1.S1_s_at	A	A1TS	POPTR_0001s35630	POPTR_0001s35630 (11)	scaffold_1:33967140-33967265(-) (11)	NA	P51419	60S ribosomal protein L27-3	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os10g41470.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1425.2.S1_s_at	A	A1TS	POPTR_0006s27030	POPTR_0006s27030 (11)	scaffold_6:25054912-25055628(-) (11)	NA	Q9SUI5	"Photosystem I reaction center subunit psaK, chloroplastic"	AT1G30380.1	photosystem I subunit K 	LOC_Os07g05480.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
Ptp.1429.1.S1_s_at	A	A1TS	POPTR_0009s16030	POPTR_0009s16030 (11)	scaffold_9:12276902-12277012(+) (11)	NA	O49884	60S ribosomal protein L30	AT1G36240.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.3	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1433.1.S1_at	A	A1TS	POPTR_0001s47020	POPTR_0001s47020 (11)	scaffold_1:47351725-47351779(+) (11)	NA	P36181	Heat shock cognate protein 80	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
Ptp.1433.1.S1_s_at	A	A1TS	POPTR_0001s47020	POPTR_0001s47020 (11)	scaffold_1:47351375-47351817(+) (11)	NA	P36181	Heat shock cognate protein 80	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
Ptp.1435.1.S1_at	A	A1TS	POPTR_0001s06710	POPTR_0001s06710 (11)	scaffold_1:5152292-5154159(-) (11)	NA	Q02366	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	AT3G12260.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os07g44650.1	"LYR motif containing protein, putative, expressed"	Medtr8g043640.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1435.1.S1_x_at	A	A1TS	POPTR_0001s06710	POPTR_0001s06710 (11)	scaffold_1:5151991-5154136(-) (11)	NA	Q02366	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	AT3G12260.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os07g44650.1	"LYR motif containing protein, putative, expressed"	Medtr8g043640.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1439.1.S1_x_at	A	A1TS	POPTR_0019s08760	POPTR_0019s08760 (11)	scaffold_19:10296019-10298078(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g48244.1	"ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1440.1.A1_s_at	A	A1TS	POPTR_0007s01700	POPTR_0007s01700 (11)	scaffold_7:989222-990292(+) (11)	NA	O24495	"Hydroxyacylglutathione hydrolase 1, mitochondrial"	AT2G43430.1	glyoxalase 2-1 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1441.1.S1_at	A	A1TS	POPTR_0002s13160	POPTR_0002s13160 (11)	scaffold_2:9787125-9788160(-) (11)	NA	Q28FY5	Transmembrane protein 147	AT1G47640.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2053, membrane (InterPro:IPR019164); Has 204 Blast hits to 204 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). "	LOC_Os03g55730.1	"SSA2 - 2S albumin seed storage family protein precursor, putative, expressed"	Medtr3g148750.1	"Transmembrane protein 147, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1443.1.S1_at	A	A1TS	POPTR_0010s11610	POPTR_0010s11610 (9)	scaffold_10:11808886-11809291(+) (9)	NA	Q9C9W9	Adagio protein 3	AT1G68050.1	"flavin-binding, kelch repeat, f box 1 "	LOC_Os11g34460.1	"OsFBO10 - F-box and other domain containing protein, expressed"	Medtr4g156890.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1447.1.S1_at	A	A1TS	POPTR_0002s02520	POPTR_0002s02520 (11)	scaffold_2:1426578-1428130(+) (11)	NA	NA	NA	AT1G75690.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os03g14040.3	expressed protein	Medtr1g030990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1451.1.S1_at	A	A1TS	POPTR_0008s19280	POPTR_0008s19280 (11)	scaffold_8:13229510-13230940(-) (11)	NA	Q8YLP4	Menaquinone biosynthesis methyltransferase ubiE	AT1G23360.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g42870.2	"methyltransferase domain containing protein, putative, expressed"	Medtr5g035030.1	UbiE/COQ5 methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1453.1.A1_s_at	A	A1TS	POPTR_0010s08450	POPTR_0010s08450 (11)	scaffold_10:9361027-9361122(-) (11)	NA	NA	NA	AT4G14440.1	3-hydroxyacyl-CoA dehydratase 1 	LOC_Os05g45300.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr2g015150.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1459.1.A1_s_at	A	A1TS	POPTR_0012s12920	POPTR_0012s12920 (11)	scaffold_12:13284426-13284864(+) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT5G52430.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g57610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.146.1.S1_at	A	A1TS	POPTR_0016s01450	POPTR_0016s01450 (9)	scaffold_16:655554-656049(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1460.1.S1_a_at	A	A1TS	POPTR_0008s20950	POPTR_0008s20950 (11)	scaffold_8:14984606-14984728(-) (11)	NA	B9RT03	UPF0497 membrane protein 4	AT4G15610.1	Uncharacterised protein family (UPF0497) 	LOC_Os07g26110.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g139640.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1460.1.S1_at	A	A1TS	POPTR_0008s20950	POPTR_0008s20950 (11)	scaffold_8:14984766-14985406(-) (11)	NA	B9RT03	UPF0497 membrane protein 4	AT4G15610.1	Uncharacterised protein family (UPF0497) 	LOC_Os07g26110.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g139640.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1462.1.S1_s_at	A	A1TS	POPTR_0001s44140	POPTR_0001s44140 (11)	scaffold_1:44617825-44618731(+) (11)	NA	Q43312	Protein H2A.7	AT1G51060.1	histone H2A 10 	LOC_Os08g33100.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr2g096630.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.1462.3.S1_s_at	A	A2TS	POPTR_0016s00240	POPTR_0016s00240 (11)//POPTR_0006s00240 (10)	scaffold_16:22710-23037(-) (11)//scaffold_6:29005-29332(+) (10)	NA	Q40193	Ras-related protein Rab11C	AT1G07410.1	RAB GTPase homolog A2B 	LOC_Os03g60870.1	"ras-related protein, putative, expressed"	Medtr3g092520.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1463.2.S1_s_at	A	A1TA	POPTR_0013s13050	POPTR_0013s13050 (10)	scaffold_13:13619965-13620222(-) (10)	NA	Q9LT67	Transcription factor bHLH113	AT1G05710.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr4g128550.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1463.3.A1_s_at	A	A1TS	POPTR_0004s24420	POPTR_0004s24420 (9)	scaffold_4:23096807-23096839(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1464.2.S1_at	A	A1TS	POPTR_0004s11250	POPTR_0004s11250 (11)	scaffold_4:9870846-9870947(-) (11)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1464.2.S1_x_at	A	A1TS	POPTR_0004s11250	POPTR_0004s11250 (11)	scaffold_4:9870710-9870947(-) (11)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1465.5.S1_x_at	A	A1TS	POPTR_0004s09910	POPTR_0004s09910 (11)	scaffold_4:8434095-8434611(-) (11)	NA	P24007	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g19381.1	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.1	"Ribulose bisphosphate carboxylase, small chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
Ptp.1466.1.S1_at	A	A1TS	POPTR_0006s06300	POPTR_0006s06300 (10)	scaffold_6:4502868-4503301(+) (10)	NA	O22060	Sucrose-phosphate synthase 1	AT5G20280.1	sucrose phosphate synthase 1F 	LOC_Os08g20660.2	"sucrose-phosphate synthase, putative, expressed"	Medtr8g121670.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
Ptp.1468.1.S1_s_at	A	A2TS	POPTR_0008s16320	POPTR_0010s08580 (11)//POPTR_0008s16320 (11)	scaffold_10:9488172-9490369(+) (11)//scaffold_8:10935859-10938072(-) (11)	NA	Q8RY18	MATH domain-containing protein At5g43560	AT1G04300.1	TRAF-like superfamily protein 	LOC_Os12g40520.1	"MATH domain containing protein, expressed"	Medtr1g064840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.147.1.S1_at	A	A1TS	POPTR_0007s07470	POPTR_0007s07470 (11)	scaffold_7:5818414-5818691(-) (11)	NA	P57742	Probable prefoldin subunit 5	AT5G23290.1	prefoldin 5 	LOC_Os10g34670.1	"prefoldin, putative, expressed"	Medtr1g143760.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.1472.1.S1_at	A	A1TS	POPTR_0008s11120	POPTR_0008s11120 (10)	scaffold_8:7024970-7025070(-) (10)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os09g29930.2	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.1474.1.S1_at	A	A1TS	POPTR_0011s11540	POPTR_0011s11540 (10)	scaffold_11:14287918-14289767(-) (10)	NA	O49453	Uncharacterized protein At4g28440	AT2G33845.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1475.1.S1_at	A	A1TS	POPTR_0008s15530	POPTR_0008s15530 (11)	scaffold_8:10308468-10308997(-) (11)	NA	O23714	Proteasome subunit beta type-2-A	AT3G22630.1	20S proteasome beta subunit D1 	LOC_Os03g48930.1	"peptidase, T1 family, putative, expressed"	Medtr5g007000.1	"20S proteasome, A and B subunits "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1476.1.S1_s_at	A	A1TS	POPTR_0018s02010	POPTR_0018s02010 (11)	scaffold_18:1809259-1809365(+) (11)	NA	Q8VY97	UPF0480 protein At4g32130	AT2G25310.1	Protein of unknown function (DUF2012) 	LOC_Os06g43650.2	"secreted salivary protein, putative, expressed"	Medtr3g137720.1	Carbohydrate-binding-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1477.1.S1_x_at	A	A1TS	POPTR_0011s13770	POPTR_0011s13770 (11)	scaffold_11:16430436-16430787(+) (11)	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os07g30640.1	"ubiquitin fusion protein, putative, expressed"	Medtr6g067240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1477.2.S1_at	A	A1TA	POPTR_0017s06670	POPTR_0017s06670 (11)	scaffold_17:5113604-5113737(+) (11)	NA	NA	NA	AT4G15248.1	B-box type zinc finger family protein 	LOC_Os08g08120.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g103560.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.148.1.S1_at	A	A1TS	POPTR_0008s05400	POPTR_0008s05400 (11)	scaffold_8:3119390-3119571(-) (11)	NA	P42747	Ubiquitin-conjugating enzyme E2 14	AT3G55380.1	ubiquitin-conjugating enzyme 14 	LOC_Os01g62244.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g078810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.1481.1.S1_at	A	A1TS	POPTR_0006s27010	POPTR_0006s27010 (10)	scaffold_6:25036403-25036487(+) (10)	NA	NA	NA	AT5G25360.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). 	LOC_Os02g10720.1	expressed protein	Medtr4g005450.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1482.1.S1_s_at	A	A2TS	POPTR_0001s24330	POPTR_0474s00200 (11)//POPTR_0001s24330 (11)	scaffold_1:23644967-23645143(+) (11)//scaffold_474:1448-1624(-) (11)	NA	Q9FVI1	Actin-depolymerizing factor 2	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.1483.1.S1_at	A	A1TS	POPTR_0001s04110	POPTR_0001s04110 (10)	scaffold_1:3253595-3254215(+) (10)	NA	Q92177	Calpain-3	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
Ptp.1487.1.A1_s_at	A	A1TS	POPTR_0009s04880	POPTR_0009s04880 (11)	scaffold_9:5110596-5111348(-) (11)	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1487.2.S1_at	A	A1MS	POPTR_0009s04880	POPTR_0009s04880 (10)	scaffold_9:5110594-5110706(-) (10)	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1488.1.S1_a_at	A	A1TS	POPTR_0014s14790	POPTR_0014s14790 (11)	scaffold_14:10863037-10863548(-) (11)	NA	P19892	Ras-related protein ARA-1	AT2G31680.1	RAB GTPase homolog A5D 	LOC_Os08g41340.1	"ras-related protein, putative, expressed"	Medtr7g046180.1	"Ras-related protein ARA-1, putative "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1489.2.S1_s_at	A	A3TS	POPTR_0005s21570	POPTR_0005s21570 (11)//POPTR_0005s21590 (11)//POPTR_0005s21600 (11)	scaffold_5:20691238-20691276(+) (11)//scaffold_5:20704594-20704632(+) (11)//scaffold_5:20711277-20711315(+) (11)	NA	P37219	Abscisic stress-ripening protein 2	NA	NA	LOC_Os01g72900.1	"abscisic stress-ripening, putative, expressed"	NA	NA	GO:0006950|response to stress	NA	NA
Ptp.149.1.S1_a_at	A	A2TS	POPTR_0016s13450	POPTR_0016s13450 (11)//POPTR_0064s00280 (11)	scaffold_16:12608248-12609068(-) (11)//scaffold_64:89029-89850(+) (11)	NA	Q76BK2	Macrophage migration inhibitory factor	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os12g01680.1	"macrophage migration inhibitory factor, putative"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1490.1.S1_at	A	A1TS	POPTR_0014s01910	POPTR_0014s01910 (10)	scaffold_14:1738097-1738276(+) (10)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1490.1.S1_s_at	A	A1TS	POPTR_0014s01910	POPTR_0014s01910 (11)	scaffold_14:1737816-1738165(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1491.1.S1_s_at	A	A1TS	POPTR_0003s09530	POPTR_0003s09530 (9)	scaffold_3:10844596-10844836(+) (9)	NA	NA	NA	AT1G32230.1	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1492.1.S1_s_at	A	A1TS	POPTR_0010s01700	POPTR_0010s01700 (11)	scaffold_10:1892082-1892125(+) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.1492.1.S1_x_at	A	A1TS	POPTR_0010s01700	POPTR_0010s01700 (11)	scaffold_10:1891555-1892297(+) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.1492.2.S1_x_at	A	A1TS	POPTR_0010s01700	POPTR_0010s01700 (11)	scaffold_10:1891483-1892236(+) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.1494.1.S1_s_at	A	A1TS	POPTR_0001s32250	POPTR_0001s32250 (11)	scaffold_1:30651019-30651274(-) (11)	NA	Q9SVQ0	Ethylene-responsive transcription factor ERF062	AT4G13620.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g09170.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr1g111860.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.1496.1.S1_s_at	A	A1TS	POPTR_0004s22740	POPTR_0004s22740 (11)	scaffold_4:21613802-21614210(+) (11)	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.1	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1497.1.S1_s_at	A	A1TS	POPTR_0014s11000	POPTR_0014s11000 (11)	scaffold_14:8195607-8195704(-) (11)	NA	A9P822	S-adenosylmethionine synthase 1	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.1497.2.S1_x_at	A	A2TS	POPTR_0002s19000	POPTR_0274s00200 (11)//POPTR_0002s19000 (11)	scaffold_2:14899437-14899978(-) (11)//scaffold_274:7467-8274(-) (11)	NA	A9P822	S-adenosylmethionine synthase 1	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.1498.1.A1_at	A	A1TS	POPTR_0001s37730	POPTR_0001s37730 (11)	scaffold_1:36797884-36798282(+) (11)	NA	Q8GY23	E3 ubiquitin-protein ligase UPL1	AT1G55860.1	ubiquitin-protein ligase 1 	LOC_Os09g07900.1	"ubiquitin-protein ligase 1, putative, expressed"	Medtr5g075640.1	"HECT; Ubiquitin interacting motif; UBA-like; DUF913, E3 ubiquitin ligase TOM1; "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
Ptp.150.1.A1_at	A	A1TS	POPTR_0013s08340	POPTR_0013s08340 (11)	scaffold_13:7414947-7415061(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1500.1.A1_at	A	A1TS	POPTR_0009s13640	POPTR_0009s13640 (11)	scaffold_9:10824826-10825289(-) (11)	NA	P81393	Myb-related protein 308	AT4G38620.1	myb domain protein 4 	LOC_Os09g36730.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1501.1.A1_s_at	A	A2TS	POPTR_0007s13320	POPTR_0007s13320 (11)//POPTR_0007s13330 (11)	scaffold_7:13433270-13442797(+) (11)//scaffold_7:13442787-13452213(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G18193.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr5g020890.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.1502.1.S1_a_at	A	A1TS	POPTR_0016s05220	POPTR_0016s05220 (11)	scaffold_16:3179666-3179916(-) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g111060.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.1502.3.S1_a_at	A	A1TS	POPTR_0016s05220	POPTR_0016s05220 (11)	scaffold_16:3180332-3181750(-) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g111060.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.1504.2.S1_s_at	A	A1TS	POPTR_0004s04320	POPTR_0004s04320 (11)	scaffold_4:3089542-3090093(-) (11)	NA	Q42877	DNA-directed RNA polymerase II subunit RPB2	AT4G21710.1	DNA-directed RNA polymerase family protein 	LOC_Os03g44484.2	"DNA-directed RNA polymerase II subunit RPB2, putative, expressed"	Medtr1g028340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1505.1.S1_a_at	A	A1TS	POPTR_0001s06700	POPTR_0001s06700 (11)	scaffold_1:5149892-5150573(+) (11)	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr8g043600.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.1507.1.S1_s_at	A	A1TS	POPTR_0003s08940	POPTR_0003s08940 (11)	scaffold_3:10234147-10234563(+) (11)	NA	P54672	AP-2 complex subunit mu	AT5G46630.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os02g46510.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g014510.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.1508.1.A1_s_at	A	A1TS	POPTR_0016s05020	POPTR_0016s05020 (11)	scaffold_16:3052548-3053226(-) (11)	NA	Q8C1A9	Uncharacterized protein C4orf29 homolog	AT3G12150.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os02g10160.1	"AGAP003371-PA, putative, expressed"	Medtr7g111340.1	"Uncharacterized protein C4orf29 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1510.1.S1_s_at	A	A1TS	POPTR_0014s14740	POPTR_0014s14740 (11)	scaffold_14:10824558-10824834(+) (11)	NA	Q8W453	Putative lipid-transfer protein DIR1	AT5G48490.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g18750.1	"LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g045700.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1511.1.S1_at	A	A1TS	POPTR_0002s04910	POPTR_0002s04910 (11)	scaffold_2:3158472-3158559(-) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	NA	GO:0005515|protein binding	NA
Ptp.1511.1.S1_s_at	A	A2TS	POPTR_0002s04910	POPTR_0002s04910 (11)//POPTR_1438s00200 (11)	scaffold_1438:6242-6536(-) (11)//scaffold_2:3153608-3153902(-) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	NA	GO:0005515|protein binding	NA
Ptp.1512.1.S1_s_at	A	A1TS	POPTR_0019s08610	POPTR_0019s08610 (11)	scaffold_19:10115183-10115892(-) (11)	NA	O65333	Chalcone--flavonone isomerase	AT5G05270.2	Chalcone-flavanone isomerase family protein 	LOC_Os12g02370.3	"chalcone--flavonone isomerase, putative, expressed"	Medtr1g146220.1	Chalcone-flavanone isomerase 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
Ptp.1513.2.A1_a_at	A	A1TS	POPTR_0008s17980	POPTR_0008s17980 (11)	scaffold_8:12067016-12068011(-) (11)	NA	Q9FX53	Trihelix transcription factor GT-1	AT1G13450.1	Homeodomain-like superfamily protein 	LOC_Os04g40930.1	"MYB family transcription factor, putative, expressed"	Medtr3g103160.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1515.1.S1_a_at	A	A1TS	POPTR_0010s10140	POPTR_0010s10140 (11)	scaffold_10:10711015-10711208(+) (11)	NA	P46293	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1515.1.S1_x_at	A	A1TS	POPTR_0010s10140	POPTR_0010s10140 (11)	scaffold_10:10710939-10711198(+) (11)	NA	P46293	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1516.3.S1_s_at	A	A1TS	POPTR_0001s38470	POPTR_0001s38470 (11)	scaffold_1:37598490-37598751(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1518.1.A1_a_at	A	A1TS	POPTR_0003s04860	POPTR_0003s04860 (11)	scaffold_3:5901834-5903373(+) (11)	NA	Q9ZU11	Homeobox-leucine zipper protein ATHB-15	AT1G52150.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr8g015460.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.1518.2.S1_a_at	A	A1TS	POPTR_0003s04860	POPTR_0003s04860 (9)	scaffold_3:5901828-5903287(+) (9)	NA	Q9ZU11	Homeobox-leucine zipper protein ATHB-15	AT1G52150.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr8g015460.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.1519.1.S1_s_at	A	A1TS	POPTR_0001s38940	POPTR_0001s38940 (11)	scaffold_1:38195140-38195208(-) (11)	NA	Q9CQU8	Mitochondrial inner membrane protease subunit 1	AT1G53530.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os11g40500.3	"OsSigP7 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr8g043500.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.152.1.S1_at	A	A1TS	POPTR_0002s07270	POPTR_0002s07270 (11)	scaffold_2:4972026-4972142(+) (11)	NA	NA	NA	AT1G48880.1	TRICHOME BIREFRINGENCE-LIKE 7 	LOC_Os01g65800.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr3g125130.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.153.1.S1_at	A	A1TS	POPTR_0011s10720	POPTR_0011s10720 (9)	scaffold_11:13302422-13302742(+) (9)	NA	Q9SYL9	"50S ribosomal protein L13, chloroplastic"	AT1G78630.1	Ribosomal protein L13 family protein 	LOC_Os01g54540.1	"ribosomal protein L13, putative, expressed"	Medtr3g106560.1	Ribosomal protein L13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.154.1.S1_at	A	A1TS	POPTR_0003s14880	POPTR_0003s14880 (9)	scaffold_3:14821399-14821871(-) (9)	NA	Q9SHE9	LOB domain-containing protein 4	AT1G31320.1	LOB domain-containing protein 4 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr4g114920.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.154.2.S1_at	A	A1MS	POPTR_0003s14880	POPTR_0003s14880 (11)	scaffold_3:14823114-14823483(-) (11)	NA	Q9SHE9	LOB domain-containing protein 4	AT1G31320.1	LOB domain-containing protein 4 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr4g114920.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1540.1.S1_s_at	A	A1TS	POPTR_0012s06320	POPTR_0012s06320 (11)	scaffold_12:6661547-6661603(+) (11)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
Ptp.1540.3.S1_s_at	A	A1TS	POPTR_0012s06320	POPTR_0012s06320 (11)	scaffold_12:6660676-6661351(+) (11)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
Ptp.1542.1.S1_at	A	A3TS	POPTR_0014s01960	POPTR_0602s00200 (11)//POPTR_0014s01960 (11)//POPTR_0602s00210 (11)	scaffold_14:1753113-1753154(-) (11)//scaffold_602:3504-3545(+) (11)//scaffold_602:10807-10848(+) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1542.1.S1_s_at	A	A3TS	POPTR_0014s01960	POPTR_0602s00200 (11)//POPTR_0014s01960 (11)//POPTR_0602s00210 (11)	scaffold_14:1752867-1753227(-) (11)//scaffold_602:3431-3791(+) (11)//scaffold_602:10734-11094(+) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1543.1.S1_at	A	A1TS	POPTR_0009s03320	POPTR_0009s03320 (11)	scaffold_9:3989528-3989763(+) (11)	NA	Q9FVI1	Actin-depolymerizing factor 2	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.1543.2.S1_s_at	A	A1TS	POPTR_0009s03330	POPTR_0009s03330 (11)	scaffold_9:3993247-3993380(+) (11)	NA	Q9FVI2	Actin-depolymerizing factor 1	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.1544.1.S1_x_at	A	A1TS	POPTR_0002s06680	POPTR_0002s06680 (11)	scaffold_2:4490796-4491402(-) (11)	POPTR_0005s21640 (7)	P35684	60S ribosomal protein L3	AT1G43170.8	ribosomal protein 1 	LOC_Os12g07010.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1544.2.S1_at	A	A1TS	POPTR_0005s21640	POPTR_0005s21640 (10)	scaffold_5:20749586-20750420(+) (10)	NA	P35684	60S ribosomal protein L3	AT1G43170.8	ribosomal protein 1 	LOC_Os12g07010.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1546.1.S1_at	A	A1TS	POPTR_0002s11150	POPTR_0002s11150 (10)	scaffold_2:8185525-8185951(-) (10)	NA	Q9LRH6	GATA transcription factor 25	AT4G24470.2	GATA-type zinc finger protein with TIFY domain 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149710.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.1547.1.S1_s_at	A	A1TS	POPTR_0013s03160	POPTR_0013s03160 (11)	scaffold_13:1923165-1925070(-) (11)	NA	P93258	Superoxide dismutase [Cu-Zn] 1	AT1G08830.2	copper/zinc superoxide dismutase 1 	LOC_Os03g22810.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr7g140060.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
Ptp.1548.1.S1_at	A	A1TS	POPTR_0001s20410	POPTR_0001s20410 (11)	scaffold_1:18368887-18370046(-) (11)	NA	Q84WC6	Ubiquitin carboxyl-terminal hydrolase 7	AT3G21280.1	ubiquitin-specific protease 7 	LOC_Os01g36930.1	"ubiquitin carboxyl-terminal hydrolase 6, putative, expressed"	AC235757_28.1	"Ubiquitin; Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 AC235757.1 83788-89694 E EGN_Mt090430 200"	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.1549.1.S1_at	A	A1TS	POPTR_0008s15950	POPTR_0008s15950 (11)	scaffold_8:10641738-10642080(+) (11)	NA	Q43117	"Pyruvate kinase isozyme A, chloroplastic"	AT3G22960.1	Pyruvate kinase family protein 	LOC_Os07g08340.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.155.1.S1_at	A	A1TS	POPTR_0001s30160	POPTR_0001s30160 (11)	scaffold_1:28709560-28710890(-) (11)	NA	O80977	Vacuolar-sorting receptor 3	AT2G14740.2	vaculolar sorting receptor 3 	LOC_Os10g20630.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1550.1.S1_at	A	A1TS	POPTR_0010s08880	POPTR_0010s08880 (11)	scaffold_10:9662301-9662561(-) (11)	NA	Q38832	Auxin-responsive protein IAA14	AT4G14550.1	indole-3-acetic acid inducible 14 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1550.1.S1_x_at	A	A1TS	POPTR_0010s08880	POPTR_0010s08880 (11)	scaffold_10:9662301-9663159(-) (11)	NA	Q38832	Auxin-responsive protein IAA14	AT4G14550.1	indole-3-acetic acid inducible 14 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1551.1.S1_at	A	A1TS	POPTR_0001s22980	POPTR_0001s22980 (11)	scaffold_1:22027545-22027628(-) (11)	NA	P93171	Calmodulin	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1551.1.S1_x_at	A	A1TS	POPTR_0001s22980	POPTR_0001s22980 (11)	scaffold_1:22027522-22027673(-) (11)	NA	P93171	Calmodulin	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1553.1.S1_a_at	A	A1TS	POPTR_0014s05450	POPTR_0014s05450 (11)	scaffold_14:4084841-4085312(-) (11)	POPTR_0014s05480 (7)	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1555.1.S1_a_at	A	A2TS	POPTR_0003s03280	POPTR_0003s08320 (11)//POPTR_0003s03280 (11)	scaffold_3:3674123-3674483(-) (11)//scaffold_3:9705187-9705719(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1555.1.S1_at	A	A1TS	POPTR_0003s08320	POPTR_0003s08320 (11)	scaffold_3:9705019-9706826(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1555.1.S1_x_at	A	A1TS	POPTR_0003s08320	POPTR_0003s08320 (11)	scaffold_3:9705019-9706826(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1555.2.A1_at	A	A1TS	POPTR_0003s03280	POPTR_0003s03280 (11)	scaffold_3:3673940-3675222(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1556.1.A1_at	A	A1TS	POPTR_0006s01080	POPTR_0006s01080 (11)	scaffold_6:612132-612828(+) (11)	NA	A5PKH3	Fumarylacetoacetase	AT1G12050.1	"fumarylacetoacetase, putative "	LOC_Os02g10310.1	"fumarylacetoacetase, putative, expressed"	Medtr2g029700.1	Fumarylacetoacetase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0009072|aromatic amino acid family metabolic process	GO:0004334|fumarylacetoacetase activity	NA
Ptp.1557.2.S1_s_at	A	A1TS	POPTR_0003s09400	POPTR_0003s09400 (11)	scaffold_3:10689156-10692618(-) (11)	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr8g077680.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
Ptp.1558.1.S1_at	A	A1TS	POPTR_0001s32170	POPTR_0001s32170 (11)	scaffold_1:30588011-30588150(+) (11)	NA	Q9FKC0	60S ribosomal protein L13a-4	AT5G48760.2	Ribosomal protein L13 family protein 	LOC_Os03g54890.1	"ribosomal protein L13, putative, expressed"	Medtr5g091220.1	"Ribosomal protein L13, archea and eukaryotic form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1559.1.S1_s_at	A	A2TS	POPTR_0016s07730	POPTR_0016s07770 (11)//POPTR_0016s07730 (11)	scaffold_16:5578353-5579012(-) (11)//scaffold_16:5601163-5601822(+) (11)	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
Ptp.1560.1.S1_at	A	A1TS	POPTR_0008s08410	POPTR_0008s08410 (10)	scaffold_8:5211762-5212169(-) (10)	NA	Q42961	"Phosphoglycerate kinase, chloroplastic"	AT3G12780.1	phosphoglycerate kinase 1 	LOC_Os05g41640.2	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077510.1	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
Ptp.1562.2.S1_a_at	A	A1TS	POPTR_0004s01560	POPTR_0004s01560 (11)	scaffold_4:925963-926328(-) (11)	NA	NA	NA	AT1G11700.1	"Protein of unknown function, DUF584 "	LOC_Os01g64300.1	"DUF584 domain containing protein, putative, expressed"	Medtr8g146700.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1563.2.S1_s_at	A	A3TS	POPTR_0014s05270	POPTR_0403s00200 (11)//POPTR_0014s05270 (11)//POPTR_0014s05290 (11)	scaffold_14:3990237-3990575(+) (11)//scaffold_14:4002126-4002464(+) (11)//scaffold_403:12892-13230(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G60470.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010620.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1568.1.S1_s_at	A	A1TS	POPTR_0017s02490	POPTR_0017s02490 (11)	scaffold_17:1805046-1805229(+) (11)	NA	Q39263	Zinc finger protein 4	AT1G66140.1	zinc finger protein 4 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr5g085190.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.157.1.S1_s_at	A	A1TS	POPTR_0022s00410	POPTR_0022s00410 (11)	scaffold_22:137169-137564(+) (11)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.1572.1.A1_at	A	A1TS	POPTR_0017s12040	POPTR_0017s12040 (11)	scaffold_17:12170963-12171344(-) (11)	NA	Q43847	"Granule-bound starch synthase 2, chloroplastic/amyloplastic"	AT3G01180.1	starch synthase 2 	LOC_Os10g30156.1	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.1573.1.S1_at	A	A1TS	POPTR_0010s08750	POPTR_0010s08750 (11)	scaffold_10:9607230-9607945(+) (11)	NA	P31674	40S ribosomal protein S15	AT5G09510.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1574.1.A1_at	A	A1TS	POPTR_0013s13520	POPTR_0013s13520 (11)	scaffold_13:13978696-13979063(-) (11)	NA	B9N2D0	UPF0497 membrane protein 10	AT1G03700.1	Uncharacterised protein family (UPF0497) 	LOC_Os05g15630.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
Ptp.1577.1.S1_at	A	A1TS	POPTR_0001s23420	POPTR_0001s23420 (10)	scaffold_1:22755674-22756152(-) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G44500.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr3g031560.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1580.1.S1_x_at	A	A1TS	POPTR_0005s07340	POPTR_0005s07340 (10)	scaffold_5:5013656-5013727(+) (10)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.1582.1.A1_at	A	A1TS	POPTR_0001s35620	POPTR_0001s35620 (11)	scaffold_1:33956462-33956824(-) (11)	NA	Q9LY84	GDSL esterase/lipase At5g14450	AT5G14450.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.1583.2.S1_x_at	A	A1TS	POPTR_0006s19870	POPTR_0006s19870 (11)	scaffold_6:18879070-18880244(-) (11)	NA	Q9AXJ4	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
Ptp.1584.1.S1_x_at	A	A1TS	POPTR_0005s26080	POPTR_0005s26080 (11)	scaffold_5:24200053-24200579(+) (11)	POPTR_0005s26070 (6)	P27495	"Chlorophyll a-b binding protein 40, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1584.2.S1_s_at	A	A1TS	POPTR_0011s02770	POPTR_0011s02770 (11)	scaffold_11:2703644-2703751(+) (11)	NA	P27493	"Chlorophyll a-b binding protein 21, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1584.3.S1_x_at	A	A1TS	POPTR_0005s26070	POPTR_0005s26070 (11)	scaffold_5:24197614-24198001(-) (11)	NA	P27490	"Chlorophyll a-b binding protein 8, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1584.4.S1_x_at	A	A1TS	POPTR_0005s26080	POPTR_0005s26080 (11)	scaffold_5:24200043-24200553(+) (11)	POPTR_0005s26070 (7)	P27495	"Chlorophyll a-b binding protein 40, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1585.1.S1_at	A	A1TS	POPTR_0003s05240	POPTR_0003s05240 (10)	scaffold_3:6480766-6480949(+) (10)	NA	NA	NA	AT1G15230.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g009250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1586.2.S1_a_at	A	A2TS	POPTR_0002s22690	POPTR_0014s13900 (11)//POPTR_0002s22690 (11)	scaffold_14:10165046-10165233(+) (11)//scaffold_2:19522129-19522316(-) (11)	NA	NA	NA	AT2G42610.2	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g111640.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1587.1.S1_s_at	A	A1TS	POPTR_0008s01820	POPTR_0008s01820 (11)	scaffold_8:860691-861014(+) (11)	NA	Q9LZ17	40S ribosomal protein S17-4	AT5G04800.4	Ribosomal S17 family protein 	LOC_Os03g01900.1	"40S ribosomal protein S17, putative, expressed"	AC146550_7.1	Ribosomal protein S17e AC146550.40 29233-28681 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1588.1.S1_s_at	A	A1TS	POPTR_0010s22950	POPTR_0010s22950 (11)	scaffold_10:19653365-19653414(-) (11)	NA	Q9SV31	Probable aquaporin PIP2-5	AT3G54820.1	plasma membrane intrinsic protein 2;5 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.1589.1.S1_x_at	A	A1TS	POPTR_0007s01660	POPTR_0007s01660 (10)	scaffold_7:957346-959251(+) (10)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1589.2.S1_x_at	A	A1TS	POPTR_0017s05460	POPTR_0017s05460 (9)	scaffold_17:4319017-4320949(+) (9)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.159.1.S1_at	A	A1TS	POPTR_0018s05410	POPTR_0018s05410 (9)	scaffold_18:4945173-4945240(-) (9)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1591.1.S1_s_at	A	A1TS	POPTR_0009s13620	POPTR_0009s13620 (11)	scaffold_9:10813486-10813628(+) (11)	NA	O24030	Proteasome subunit alpha type-7	AT5G66140.1	proteasome alpha subunit D2 	LOC_Os08g43540.1	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1593.1.A1_at	A	A1TS	POPTR_0014s00900	POPTR_0014s00900 (11)	scaffold_14:816713-817201(-) (11)	NA	Q9VCY8	ADIPOR-like receptor CG5315	AT4G37680.2	heptahelical protein 4 	LOC_Os03g13040.1	"haemolysin-III, putative, expressed"	Medtr5g015420.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
Ptp.1593.1.A1_s_at	A	A1TS	POPTR_0014s00900	POPTR_0014s00900 (11)	scaffold_14:816842-817252(-) (11)	NA	Q9VCY8	ADIPOR-like receptor CG5315	AT4G37680.2	heptahelical protein 4 	LOC_Os03g13040.1	"haemolysin-III, putative, expressed"	Medtr5g015420.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
Ptp.1595.1.A1_at	A	A1TS	POPTR_0010s10120	POPTR_0010s10120 (11)	scaffold_10:10684145-10685989(-) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT3G05990.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g08610.1	"leucine-rich repeat family protein, putative, expressed"	Medtr1g132820.1	"Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, related "	NA	GO:0005515|protein binding	NA
Ptp.1596.1.A1_at	A	A1TS	POPTR_0003s21190	POPTR_0003s21190 (9)	scaffold_3:19445730-19446231(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
Ptp.1599.1.A1_at	A	A1TS	POPTR_0009s12430	POPTR_0009s12430 (11)	scaffold_9:10142360-10142398(-) (11)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT4G39080.1	vacuolar proton ATPase A3 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.16.1.S1_at	A	A1TS	POPTR_0014s01740	POPTR_0014s01740 (11)	scaffold_14:1629155-1629391(-) (11)	NA	P31166	"Adenine phosphoribosyltransferase 1, chloroplastic"	AT1G27450.1	adenine phosphoribosyl transferase 1 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.16.1.S1_s_at	A	A1TS	POPTR_0014s01740	POPTR_0014s01740 (11)	scaffold_14:1629418-1630292(-) (11)	NA	P31166	"Adenine phosphoribosyltransferase 1, chloroplastic"	AT1G27450.1	adenine phosphoribosyl transferase 1 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.160.1.S1_x_at	A	A1TS	POPTR_0002s20570	POPTR_0002s20570 (11)	scaffold_2:16650669-16651008(-) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1600.1.A1_s_at	A	A1TS	POPTR_0001s33890	POPTR_0001s33890 (11)	scaffold_1:32051644-32052385(-) (11)	NA	Q9FMT4	SWI/SNF complex component SNF12 homolog	AT5G14170.1	SWIB/MDM2 domain superfamily protein 	LOC_Os04g31320.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr8g109310.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1601.1.A1_at	A	A1TS	POPTR_0003s14260	POPTR_0003s14260 (11)	scaffold_3:14372393-14372895(-) (11)	NA	Q84TF5	RING-H2 zinc finger protein RHA4a	AT4G24015.1	RING/U-box superfamily protein 	LOC_Os02g35144.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g031670.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1602.1.S1_at	A	A1TS	POPTR_0005s27890	POPTR_0005s27890 (11)	scaffold_5:25353263-25354044(-) (11)	POPTR_0002s00520 (7)	Q8LF80	Cyclin-dependent kinase B2-1	AT1G76540.1	cyclin-dependent kinase B2;1 	LOC_Os08g40170.1	"cyclin-dependent kinase B2-1, putative, expressed"	Medtr1g090200.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1606.1.A1_at	A	A1TS	POPTR_0018s04060	POPTR_0018s04060 (11)	scaffold_18:3474606-3474961(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os08g40880.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g133100.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1608.1.A1_at	A	A1TS	POPTR_0002s18590	POPTR_0002s18590 (11)	scaffold_2:14453676-14453981(-) (11)	NA	Q8RWN7	Protein phosphatase 2C 32	AT2G46920.2	Protein phosphatase 2C family protein 	LOC_Os03g25600.2	"protein phosphatase 2C, putative, expressed"	Medtr8g102940.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1609.1.A1_s_at	A	A1TS	POPTR_0004s13530	POPTR_0004s13530 (11)	scaffold_4:13818285-13818579(+) (11)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.161.1.S1_at	A	A1TS	POPTR_0002s12130	POPTR_0002s12130 (11)	scaffold_2:9004320-9004703(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1610.1.A1_a_at	A	A1TS	POPTR_0007s12370	POPTR_0007s12370 (11)	scaffold_7:12698373-12698428(+) (11)	NA	Q94A43	BES1/BZR1 homolog protein 2	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1611.1.A1_at	A	A1TS	POPTR_0002s22380	POPTR_0002s22380 (11)	scaffold_2:19084306-19084768(-) (11)	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1614.1.A1_at	A	A1TS	POPTR_0018s14730	POPTR_0018s14730 (10)	scaffold_18:14824770-14825113(-) (10)	NA	Q93Z08	"Glucan endo-1,3-beta-glucosidase 6"	AT5G58090.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g04670.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1616.1.A1_s_at	A	A1TS	POPTR_0014s09050	POPTR_0014s09050 (11)	scaffold_14:6683324-6683950(-) (11)	NA	Q9M373	Arabinogalactan peptide 20	AT3G61640.1	arabinogalactan protein 20 	LOC_Os01g46850.1	expressed protein	Medtr3g124660.1	Protein of unknown function DUF1070 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1618.1.A1_at	A	A1TS	POPTR_0015s07500	POPTR_0015s07500 (11)	scaffold_15:8797560-8797969(+) (11)	NA	NA	NA	AT5G62550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). 	LOC_Os06g38960.2	expressed protein	Medtr8g112630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1619.1.S1_at	A	A1TS	POPTR_0005s25750	POPTR_0005s25750 (11)	scaffold_5:23955196-23956150(+) (11)	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.162.1.A1_at	A	A1TS	POPTR_0002s20260	POPTR_0002s20260 (11)	scaffold_2:16215073-16215815(+) (11)	NA	O81122	Ethylene receptor	AT2G40940.1	ethylene response sensor 1 	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.1621.3.S1_s_at	A	A1TS	POPTR_0019s08060	POPTR_0019s08060 (10)	scaffold_19:9424792-9426495(-) (10)	NA	Q6ZIB9	UPF0016 protein 4	AT5G36290.2	Uncharacterized protein family (UPF0016) 	LOC_Os08g41670.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr7g089540.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
Ptp.1622.1.A1_s_at	A	A1TS	POPTR_0007s10720	POPTR_0007s10720 (11)	scaffold_7:10763921-10764252(+) (11)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G67200.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1623.1.S1_at	A	A1TS	POPTR_0019s01600	POPTR_0019s01600 (11)	scaffold_19:1413215-1413580(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT2G03200.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g37550.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr5g088120.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1627.1.A1_s_at	A	A1TS	POPTR_0001s45780	POPTR_0001s45780 (9)	scaffold_1:46306048-46306615(+) (9)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.1629.1.A1_s_at	A	A2TS	POPTR_0001s28070	POPTR_0009s07280 (11)//POPTR_0001s28070 (11)	scaffold_1:26872878-26872933(+) (11)//scaffold_9:6839520-6839575(+) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os01g16350.2	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.1	Hydroxymethylglutaryl-coenzyme A lyase active site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1631.1.S1_at	A	A1TS	POPTR_0002s12460	POPTR_0002s12460 (11)	scaffold_2:9245820-9246344(+) (11)	NA	Q9C626	F-box protein At1g47056	AT1G47056.1	VIER F-box proteine 1 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1631.2.A1_at	A	A1TA	POPTR_0002s12460	POPTR_0002s12460 (11)	scaffold_2:9246236-9246339(-) (11)	NA	Q9C626	F-box protein At1g47056	AT1G47056.1	VIER F-box proteine 1 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1634.1.A1_at	A	A1TS	POPTR_0014s07960	POPTR_0014s07960 (11)	scaffold_14:5919521-5920282(+) (11)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47040.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1635.1.S1_s_at	A	A1TS	POPTR_0006s08250	POPTR_0006s08250 (11)	scaffold_6:5987926-5988740(-) (11)	NA	Q43187	Soluble inorganic pyrophosphatase	AT3G53620.1	pyrophosphorylase 4 	LOC_Os05g02310.1	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr1g081230.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.1639.1.A1_at	A	A1TS	POPTR_0001s01930	POPTR_0001s01930 (11)	scaffold_1:1403212-1404402(-) (11)	NA	Q39639	"Glycerol-3-phosphate acyltransferase, chloroplastic"	AT1G32200.2	phospholipid/glycerol acyltransferase family protein 	LOC_Os10g42720.1	"acyltransferase, putative, expressed"	Medtr5g029110.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.164.1.S1_at	A	A1TS	POPTR_0017s11900	POPTR_0017s11900 (10)	scaffold_17:11866667-11867123(+) (10)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT3G28917.1	mini zinc finger 2 	LOC_Os08g37400.1	"ZF-HD homeobox protein, putative, expressed"	Medtr3g046460.1	ZF-HD homeobox protein Cys/His-rich dimerisation region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1640.2.S1_s_at	A	A2TS	POPTR_0008s04040	POPTR_0010s22840 (11)//POPTR_0008s04040 (11)	scaffold_10:19607714-19608771(+) (11)//scaffold_8:2231260-2232343(-) (11)	NA	P57720	"Chorismate synthase, chloroplastic"	AT1G48850.1	"chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative "	LOC_Os03g14990.1	"chorismate synthase 2, chloroplast precursor, putative, expressed"	Medtr1g121140.1	Chorismate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004107|chorismate synthase activity	NA
Ptp.1641.1.A1_at	A	A1TS	POPTR_0004s21200	POPTR_0004s21200 (11)	scaffold_4:20435117-20435732(+) (11)	NA	Q1E6U9	Protein transport protein SEC24	AT2G27460.1	sec23/sec24 transport family protein 	LOC_Os05g37120.1	"sec23/Sec24 zinc finger family protein, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
Ptp.1643.1.S1_s_at	A	A1TS	POPTR_0018s06400	POPTR_0018s06400 (11)	scaffold_18:6253252-6253467(+) (11)	NA	O48788	Probable inactive receptor kinase At2g26730	AT2G26730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g42294.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g118800.1	Formate C-acetyltransferase glycine radical; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1646.1.S1_a_at	A	A1TS	POPTR_0018s05760	POPTR_0018s05760 (11)	scaffold_18:5342983-5343274(+) (11)	NA	NA	NA	AT1G15260.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g158810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1647.1.S1_at	A	A1TS	POPTR_0001s17120	POPTR_0001s17120 (11)	scaffold_1:13994427-13995110(+) (11)	NA	Q5RC30	Signal peptidase complex catalytic subunit SEC11C	AT1G52600.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os06g16260.1	"OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed"	Medtr2g126230.1	"Peptidase S24, S26A and S26B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1650.1.A1_at	A	A1TS	POPTR_0008s02980	POPTR_0008s02980 (10)	scaffold_8:1570167-1570672(+) (10)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os03g01710.1	expressed protein	Medtr1g074280.1	Prefoldin 	NA	NA	GO:0016020|membrane
Ptp.1651.1.A1_at	A	A1TS	POPTR_0007s15270	POPTR_0007s15270 (10)	scaffold_7:14861318-14862769(-) (10)	NA	Q8L4M1	WD repeat-containing protein DWA1	AT2G19430.1	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 	LOC_Os09g19900.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC233845_6.1	WD40-like AC233845.2 14214-12180 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1652.1.A1_at	A	A1TS	POPTR_0002s26090	POPTR_0002s26090 (11)	scaffold_2:23063490-23063909(-) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os06g21340.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr8g147730.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
Ptp.1652.2.S1_s_at	A	A1TS	POPTR_0002s26090	POPTR_0002s26090 (11)	scaffold_2:23064645-23065895(-) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os06g21340.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr8g147730.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
Ptp.1653.1.A1_at	A	A1TS	POPTR_0004s10380	POPTR_0004s10380 (11)	scaffold_4:8912183-8912910(-) (11)	NA	Q9HGL3	Protein sum2	AT1G26110.2	decapping 5 	LOC_Os06g30060.2	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1655.1.A1_s_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (11)	scaffold_18:10253788-10254225(+) (11)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1655.3.A1_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (9)	scaffold_18:10245781-10246353(+) (9)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.166.1.S1_s_at	A	A1TS	POPTR_0002s15920	POPTR_0002s15920 (11)	scaffold_2:11859778-11860968(-) (11)	NA	P93788	Remorin	AT3G61260.1	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1660.1.A1_at	A	A1TS	POPTR_0014s05100	POPTR_0014s05100 (11)	scaffold_14:3889777-3889815(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.1	casein kinase II  beta chain 1 	LOC_Os10g41520.2	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.1661.1.S1_at	A	A1TS	POPTR_0016s09290	POPTR_0016s09290 (10)	scaffold_16:7296783-7296986(-) (10)	NA	Q8LJT8	TSL-kinase interacting protein 1	AT2G36960.3	TSL-kinase interacting protein 1 	LOC_Os03g13790.2	"myb/SANT domain protein, putative, expressed"	Medtr4g141280.1	"myb/SANT domain protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1662.1.A1_at	A	A1TS	POPTR_0002s15090	POPTR_0002s15090 (11)	scaffold_2:11187375-11188136(-) (11)	NA	NA	NA	AT5G42660.1	Protein of unknown function (DUF616) 	LOC_Os01g54530.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr1g025800.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1663.1.A1_s_at	A	A1TS	POPTR_0005s25260	POPTR_0005s25260 (11)	scaffold_5:23570881-23571203(+) (11)	NA	Q9SH88	Ribosome biogenesis regulatory protein homolog	AT2G37990.1	ribosome biogenesis regulatory protein (RRS1) family protein 	LOC_Os04g58830.1	"ribosome biogenesis regulatory protein, putative, expressed"	Medtr2g008920.1	Ribosomal biogenesis regulatory protein 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
Ptp.1665.1.S1_s_at	A	A1TS	POPTR_0015s08040	POPTR_0015s08040 (11)	scaffold_15:9316859-9317091(-) (11)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT5G62580.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1670.1.S1_at	A	A1TS	POPTR_0005s20670	POPTR_0005s20670 (11)	scaffold_5:19793797-19794121(-) (11)	NA	Q0WT31	Probable methyltransferase PMT25	AT2G34300.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1670.1.S1_s_at	A	A1TS	POPTR_0005s20670	POPTR_0005s20670 (11)	scaffold_5:19793520-19793808(-) (11)	NA	Q0WT31	Probable methyltransferase PMT25	AT2G34300.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1672.1.A1_a_at	A	A1TS	POPTR_0012s13080	POPTR_0012s13080 (11)	scaffold_12:13378036-13378105(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
Ptp.1672.1.A1_at	A	A1TS	POPTR_0012s13080	POPTR_0012s13080 (11)	scaffold_12:13376543-13377052(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
Ptp.1672.2.A1_at	A	A1MS	POPTR_0012s13080	POPTR_0012s13080 (11)	scaffold_12:13377720-13377994(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
Ptp.1674.1.A1_s_at	A	A1TS	POPTR_0005s08490	POPTR_0005s08490 (9)	scaffold_5:5899521-5899567(-) (9)	NA	P73627	Uncharacterized protein sll1770	AT5G64940.2	ABC2 homolog 13 	LOC_Os02g36570.1	"ABC1 family domain containing protein, putative, expressed"	Medtr3g144970.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1675.1.A1_at	A	A1TS	POPTR_0002s19550	POPTR_0002s19550 (10)	scaffold_184:26351-26759(-) (11)//scaffold_2:15521738-15522146(+) (11)//scaffold_2:15543508-15543910(+) (11)	NA	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT4G02010.1	Protein kinase superfamily protein 	LOC_Os01g14932.1	"NAK-like ser/thr protein kinase, putative, expressed"	Medtr7g133110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1676.1.A1_at	A	A1TS	POPTR_0005s05370	POPTR_0005s05370 (10)	scaffold_5:3551574-3553185(+) (10)	NA	Q9SQZ9	UPF0424 protein At3g04780	AT3G04780.1	Protein of unknown function (DUF1000) 	LOC_Os03g58130.1	"thioredoxin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1677.1.A1_at	A	A1TS	POPTR_0008s23190	POPTR_0008s23190 (11)	scaffold_8:18498663-18498819(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G16850.1	Pectin lyase-like superfamily protein 	LOC_Os11g43750.1	"polygalacturonase, putative, expressed"	Medtr8g138460.1	"Glycoside hydrolase, family 28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1681.1.A1_at	A	A1TS	POPTR_0008s04370	POPTR_0008s04370 (11)	scaffold_8:2453716-2455445(-) (11)	NA	Q54TH4	Golgi to ER traffic protein 4 homolog	AT5G63220.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). 	LOC_Os01g07100.1	expressed protein	Medtr1g121920.1	Protein of unknown function DUF410 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1682.1.A1_s_at	A	A1TS	POPTR_0011s07550	POPTR_0011s07550 (11)	scaffold_11:8383029-8383565(+) (11)	NA	NA	NA	AT1G29050.1	TRICHOME BIREFRINGENCE-LIKE 38 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr2g019150.2	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1683.1.S1_a_at	A	A1TS	POPTR_0002s10990	POPTR_0002s10990 (11)	scaffold_2:8012121-8012403(-) (11)	NA	P50433	"Serine hydroxymethyltransferase, mitochondrial"	AT5G26780.1	serine hydroxymethyltransferase 2 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.1686.1.A1_at	A	A1TS	POPTR_0001s44720	POPTR_0001s44720 (10)	scaffold_1:45145800-45146290(-) (10)	NA	Q59156	DNA polymerase I	AT1G50840.1	polymerase gamma 2 	LOC_Os08g07840.1	"PolI-like DNA polymerase, putative, expressed"	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
Ptp.1687.1.A1_at	A	A1TS	POPTR_0017s14120	POPTR_0017s14120 (9)	scaffold_17:14291900-14292269(-) (9)	NA	NA	NA	AT3G02420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g42010.1	expressed protein	AC233572_11.1	hypothetical protein AC233572.2 52137-58374 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1688.2.A1_at	A	A1MA	POPTR_0013s03780	POPTR_0013s03780 (10)	scaffold_13:2444059-2444540(-) (10)	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
Ptp.1690.1.A1_at	A	A1TS	POPTR_0009s07920	POPTR_0009s07920 (11)	scaffold_9:7330229-7330641(-) (11)	NA	C0LGU7	Probable LRR receptor-like serine/threonine-protein kinase At5g45840	AT5G45840.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr3g094640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1691.1.S1_at	A	A1TS	POPTR_0005s00250	POPTR_0005s00250 (9)	scaffold_5:35121-35253(+) (9)	NA	Q8BG09	Transmembrane protein 184B	AT3G05940.1	Protein of unknown function (DUF300) 	LOC_Os03g61210.1	"domain of unknown function domain containing protein, expressed"	Medtr7g134570.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1692.1.A1_s_at	A	A1TS	POPTR_0009s06890	POPTR_0009s06890 (11)	scaffold_9:6560430-6560657(-) (11)	NA	P74516	Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase slr0992	AT5G26880.2	AGAMOUS-like 26 	LOC_Os08g39600.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr3g030550.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.1694.1.S1_s_at	A	A2TS	POPTR_0012s09710	POPTR_0012s09710 (11)//POPTR_0015s10480 (11)	scaffold_12:10666569-10666640(+) (11)//scaffold_15:11396305-11396376(+) (11)	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
Ptp.1694.2.S1_at	A	A1MS	POPTR_0015s10480	POPTR_0015s10480 (10)	scaffold_15:11396414-11396611(+) (10)	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
Ptp.1696.1.A1_at	A	A1TS	POPTR_0002s06970	POPTR_0002s06970 (11)	scaffold_2:4721523-4721920(+) (11)	NA	Q0IIH8	Protein FAM188A	AT1G43690.1	ubiquitin interaction motif-containing protein 	LOC_Os04g34440.1	"ubiquitin interaction motif-containing protein, putative, expressed"	Medtr1g125350.1	Ubiquitin interacting motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.17.1.S1_at	A	A1TS	POPTR_0001s35220	POPTR_0001s35220 (10)	scaffold_1:33517097-33517549(+) (10)	NA	Q9LK94	"Probable monodehydroascorbate reductase, cytoplasmic isoform 2"	AT3G27820.1	monodehydroascorbate reductase 4 	LOC_Os02g47800.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.170.1.S1_s_at	A	A1TS	POPTR_0014s05240	POPTR_0014s05240 (11)	scaffold_14:3976098-3976339(+) (11)	NA	Q67YI6	RING-H2 finger protein ATL65	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1701.1.S1_at	A	A1TS	POPTR_0007s12270	POPTR_0007s12270 (11)	scaffold_7:12588894-12588944(-) (11)	NA	Q9S7G2	Probable galacturonosyltransferase-like 2	AT3G50760.1	galacturonosyltransferase-like 2 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1701.1.S1_s_at	A	A1TS	POPTR_0007s12270	POPTR_0007s12270 (11)	scaffold_7:12588992-12589406(-) (11)	NA	Q9S7G2	Probable galacturonosyltransferase-like 2	AT3G50760.1	galacturonosyltransferase-like 2 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1705.1.A1_at	A	A1TS	POPTR_0011s13830	POPTR_0011s13830 (11)	scaffold_11:16464091-16464589(+) (11)	NA	P09607	Pectinesterase 2.1	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g047030.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.1706.1.A1_a_at	A	A1TS	POPTR_0007s12560	POPTR_0007s12560 (11)	scaffold_7:12850777-12851163(+) (11)	NA	Q9M065	"Pentatricopeptide repeat-containing protein At4g36680, mitochondrial"	AT4G36680.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g42210.1	"membrane-associated salt-inducible protein like, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1708.1.A1_at	A	A1TS	POPTR_0004s00560	POPTR_0004s00560 (11)	scaffold_4:213048-213182(+) (11)	NA	NA	NA	AT4G22190.1	unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). 	LOC_Os11g30430.1	expressed protein	Medtr2g029070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1711.1.A1_a_at	A	A1TS	POPTR_0008s13630	POPTR_0008s13630 (11)	scaffold_8:8972289-8973163(-) (11)	NA	Q8C1Y8	Vacuolar fusion protein CCZ1 homolog	AT1G16020.1	Protein of unknown function (DUF1712) 	LOC_Os08g33076.1	"myrosinase precursor, putative, expressed"	Medtr4g156530.1	"myrosinase precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1712.1.A1_at	A	A1TS	POPTR_0004s19420	POPTR_0004s19420 (10)	scaffold_4:19263847-19265487(+) (10)	NA	O23006	LysM domain-containing GPI-anchored protein 2	AT2G17120.1	lysm domain GPI-anchored protein 2 precursor 	LOC_Os09g37600.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	AC235671_7.1	Peptidoglycan-binding LysM AC235671.2 31615-27432 E EGN_Mt090430 200	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.1713.1.A1_at	A	A1TS	POPTR_0014s07180	POPTR_0014s07180 (10)	scaffold_14:5428319-5428457(-) (10)	NA	Q9ZPH9	Probable methyltransferase PMT15	AT4G00750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1714.1.A1_a_at	A	A1TS	POPTR_0014s11300	POPTR_0014s11300 (11)	scaffold_14:8404904-8405035(-) (11)	NA	Q93W77	"NifU-like protein 1, chloroplastic"	AT4G01940.1	NFU domain protein 1 	LOC_Os03g20010.1	"nifU, putative, expressed"	Medtr7g133310.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
Ptp.1717.1.A1_at	A	A1TS	POPTR_0011s11720	POPTR_0011s11720 (9)	scaffold_11:14520843-14521373(+) (10)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT5G53900.2	Serine/threonine-protein kinase WNK (With No Lysine)-related 	LOC_Os11g25920.1	"transcription factor-related, putative, expressed"	Medtr1g023870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.172.1.S1_s_at	A	A1TS	POPTR_0009s06860	POPTR_0009s06860 (11)	scaffold_9:6547499-6548768(+) (11)	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr6g093440.1	Ribosomal protein L31e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1721.1.S1_at	A	A1TS	POPTR_0008s14360	POPTR_0008s14360 (11)	scaffold_8:9523258-9523531(+) (11)	NA	Q8L799	Inositol oxygenase 1	AT1G14520.2	myo-inositol oxygenase 1 	LOC_Os06g36560.2	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
Ptp.1721.1.S1_s_at	A	A1TS	POPTR_0008s14360	POPTR_0008s14360 (11)	scaffold_8:9523526-9524173(+) (11)	NA	Q8L799	Inositol oxygenase 1	AT1G14520.2	myo-inositol oxygenase 1 	LOC_Os06g36560.2	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
Ptp.1723.1.A1_s_at	A	A1TS	POPTR_0015s07200	POPTR_0015s07200 (11)	scaffold_15:8347937-8348356(-) (11)	NA	Q9FLQ7	Formin-like protein 20	AT5G07740.1	actin binding 	LOC_Os07g40510.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g026810.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1724.1.A1_s_at	A	A1TS	POPTR_0018s03740	POPTR_0018s03740 (11)	scaffold_18:3186943-3187955(-) (11)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT5G24870.2	RING/U-box superfamily protein 	LOC_Os06g48040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g133350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1726.1.S1_a_at	A	A1MS	POPTR_0002s11950	POPTR_0002s11950 (11)	scaffold_2:8849979-8850232(+) (11)	NA	Q9FHS6	F-box/kelch-repeat protein At5g43190	AT5G43190.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g57290.1	"OsFBX153 - F-box domain containing protein, expressed"	Medtr1g023250.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1727.1.A1_s_at	A	A1TS	POPTR_0010s11630	POPTR_0010s11630 (11)	scaffold_10:11814163-11815932(-) (11)	NA	Q8LF21	Dynamin-related protein 1C	AT1G14830.1	DYNAMIN-like 1C 	LOC_Os03g50520.1	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.1729.1.A1_at	A	A1MS	POPTR_0002s20740	POPTR_0002s20740 (11)	scaffold_2:16826253-16828514(-) (11)	NA	Q505J9	ATPase family AAA domain-containing protein 1	AT1G02890.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr1g108580.1	"Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central region; SMAD/FHA "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1734.2.A1_s_at	A	A1TS	POPTR_0018s12420	POPTR_0018s12420 (11)	scaffold_18:12910442-12910540(+) (11)	NA	Q96FX7	tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A	AT5G14600.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g25360.1	"tRNA methyltransferase complex GCD14 subunit, putative, expressed"	Medtr2g018150.1	tRNA methyltransferase complex GCD14 subunit 	GO:0044281|small molecule metabolic process||GO:0030488|tRNA methylation||GO:0044260|cellular macromolecule metabolic process	GO:0016429|tRNA (adenine-N1-)-methyltransferase activity	NA
Ptp.1735.1.S1_at	A	A1TS	POPTR_0002s13900	POPTR_0002s13900 (11)	scaffold_2:10308821-10310566(-) (11)	NA	Q9QZR0	E3 ubiquitin-protein ligase RNF25	AT3G60300.1	RWD domain-containing protein 	LOC_Os11g35870.1	"RWD domain containing protein, expressed"	Medtr5g027310.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1738.1.S1_s_at	A	A1TS	POPTR_0012s00670	POPTR_0012s00670 (11)	scaffold_12:370045-370564(-) (11)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.1739.1.A1_at	A	A1TS	POPTR_0010s00770	POPTR_0010s00770 (11)	scaffold_10:483481-483897(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G16850.1	Pectin lyase-like superfamily protein 	LOC_Os11g43750.1	"polygalacturonase, putative, expressed"	Medtr8g138460.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.174.1.S1_s_at	A	A1TS	POPTR_0003s15800	POPTR_0003s15800 (11)	scaffold_3:15495045-15495240(-) (11)	NA	Q41542	Probable xyloglucan endotransglucosylase/hydrolase	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099560.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.1743.1.A1_a_at	A	A1TS	POPTR_0002s19960	POPTR_0002s19960 (11)	scaffold_2:15887159-15888406(-) (11)	NA	Q8KPU9	Arginyl-tRNA synthetase	AT4G26300.1	"Arginyl-tRNA synthetase, class Ic "	LOC_Os05g07030.1	"arginyl-tRNA synthetase, putative, expressed"	Medtr3g128230.1	DALR anticodon binding; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006420|arginyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004814|arginine-tRNA ligase activity	GO:0005737|cytoplasm
Ptp.1746.1.A1_at	A	A1TS	POPTR_0013s06350	POPTR_0013s06350 (11)	scaffold_13:4897734-4898214(+) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT5G17790.1	zinc finger (Ran-binding) family protein 	LOC_Os01g59980.1	"zinc finger family protein, putative, expressed"	Medtr7g103850.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1750.1.S1_at	A	A1TS	POPTR_0001s02820	POPTR_0001s02820 (11)	scaffold_1:2230022-2231235(-) (11)	NA	Q40546	"Pyruvate kinase isozyme G, chloroplastic"	AT1G32440.1	plastidial pyruvate kinase 3 	LOC_Os10g42100.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.1751.2.A1_at	A	A1TS	POPTR_0002s13960	POPTR_0002s13960 (9)	scaffold_2:10353951-10356039(+) (9)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.1751.2.A1_s_at	A	A1TS	POPTR_0002s13960	POPTR_0002s13960 (9)	scaffold_2:10355194-10355939(+) (9)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.1752.2.A1_s_at	A	A1TS	POPTR_0007s00290	POPTR_0007s00290 (11)	scaffold_7:76195-76824(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1753.1.A1_s_at	A	A1TS	POPTR_0005s21850	POPTR_0005s21850 (11)	scaffold_5:20910446-20910919(-) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G09810.1	Nucleotide-sugar transporter family protein 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr1g124720.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1754.1.A1_s_at	A	A1TS	POPTR_0015s05690	POPTR_0015s05690 (11)	scaffold_15:6040644-6040698(-) (11)	NA	NA	NA	AT5G52870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g12640.2	expressed protein	Medtr1g126380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1755.1.S1_at	A	A1TS	POPTR_0004s14080	POPTR_0004s14080 (9)	scaffold_4:14566197-14566279(-) (9)	NA	Q38772	Cell division control protein 2 homolog A	AT3G48750.1	cell division control 2 	LOC_Os03g02680.2	"cyclin-dependent kinase A-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1757.1.A1_at	A	A1TS	POPTR_0010s14010	POPTR_0010s14010 (9)	scaffold_10:13707731-13708038(-) (9)	NA	Q9S7Y1	Transcription factor bHLH30	AT1G68810.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr1g118050.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.1758.1.A1_at	A	A1TS	POPTR_0008s19180	POPTR_0008s19180 (10)	scaffold_8:13147686-13147970(+) (10)	NA	Q9BXS5	AP-1 complex subunit mu-1	AT1G60780.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os01g50770.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g034870.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.1759.1.A1_at	A	A1TS	POPTR_0010s16310	POPTR_0010s16310 (10)	scaffold_10:15284154-15286924(+) (10)	NA	Q55FJ0	Probable inactive serine/threonine-protein kinase lvsG	AT5G18525.1	protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases 	LOC_Os01g22390.2	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.176.2.S1_a_at	A	A1TS	POPTR_0005s07380	POPTR_0005s07380 (11)	scaffold_5:5042115-5042766(+) (11)	NA	Q9M3V8	40S ribosomal protein S6	AT5G10360.1	Ribosomal protein S6e 	LOC_Os03g27260.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1762.1.A1_at	A	A1TS	POPTR_0001s45250	POPTR_0001s45250 (11)	scaffold_1:45755796-45756194(-) (11)	NA	Q84WP6	NAC domain-containing protein 43	AT2G46770.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g02300.1	"no apical meristem protein, putative, expressed"	Medtr4g041220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.1767.1.A1_s_at	A	A1TS	POPTR_0001s25500	POPTR_0001s25500 (11)	scaffold_1:24598930-24600150(+) (11)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT5G58970.1	uncoupling protein 2 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1768.1.A1_at	A	A1TS	POPTR_0002s13350	POPTR_0002s13350 (10)	scaffold_2:9909389-9910082(-) (10)	NA	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570	AT1G13570.1	F-box/RNI-like superfamily protein 	LOC_Os02g33400.1	"OsFBL9 - F-box domain and LRR containing protein, expressed"	Medtr1g025860.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1769.1.S1_at	A	A1TS	POPTR_0019s11500	POPTR_0019s11500 (10)	scaffold_19:12763912-12764855(+) (10)	NA	O78458	Uncharacterized protein ycf37	AT1G22700.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g32300.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1770.1.A1_at	A	A1TS	POPTR_0002s24710	POPTR_0002s24710 (11)	scaffold_2:21997637-21998147(-) (11)	NA	NA	NA	AT3G07210.1	unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). 	LOC_Os01g68830.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1771.1.A1_s_at	A	A1TS	POPTR_0012s12420	POPTR_0012s12420 (11)	scaffold_12:12754071-12754518(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1773.1.A1_at	A	A1TS	POPTR_0019s13500	POPTR_0019s13500 (11)	scaffold_19:14417634-14418401(+) (11)	NA	Q9SKT3	Secretory carrier-associated membrane protein 1	AT2G20840.1	Secretory carrier membrane protein (SCAMP) family protein 	LOC_Os07g37740.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
Ptp.1775.1.S1_at	A	A1TS	POPTR_0005s06280	POPTR_0005s06280 (11)	scaffold_5:4129719-4129987(-) (11)	NA	O15488	Glycogenin-2	AT3G18660.2	plant glycogenin-like starch initiation protein 1 	LOC_Os01g65780.2	"glycosyl transferase, putative, expressed"	Medtr3g143690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1777.1.S1_at	A	A1TS	POPTR_0005s22560	POPTR_0005s22560 (11)	scaffold_5:21478065-21478601(+) (11)	NA	Q9UP83	Conserved oligomeric Golgi complex subunit 5	AT1G67930.1	Golgi transport complex protein-related 	LOC_Os05g31490.1	"golgi transport complex protein-related, putative, expressed"	Medtr5g098500.1	"Golgi transport complex protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1779.1.S1_at	A	A1TS	POPTR_0011s09660	POPTR_0011s09660 (9)	scaffold_11:12051960-12053009(+) (9)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT5G55180.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1780.1.S1_at	A	A1TS	POPTR_0001s12940	POPTR_0001s12940 (11)	scaffold_1:10033218-10033662(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT1G27440.1	Exostosin family protein 	LOC_Os01g70200.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.1786.1.A1_at	A	A1TS	POPTR_0005s06180	POPTR_0005s06180 (9)	scaffold_5:4060793-4061221(+) (9)	NA	Q10058	UPF0673 membrane protein C1F5.03c	AT5G67290.1	FAD-dependent oxidoreductase family protein 	LOC_Os07g06080.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr8g087210.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1787.1.S1_s_at	A	A1TS	POPTR_0009s08850	POPTR_0009s08850 (11)	scaffold_9:7992385-7992870(-) (11)	NA	P33629	Tubulin alpha chain	AT1G50010.1	tubulin alpha-2 chain 	LOC_Os11g14220.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.1788.1.A1_at	A	A1TS	POPTR_0017s02010	POPTR_0017s02010 (9)	scaffold_17:1476014-1476444(+) (9)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT1G65920.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os04g49430.1	"ZR1 protein, putative"	Medtr3g086740.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.179.1.A1_at	A	A1TS	POPTR_0001s40800	POPTR_0001s40800 (10)	scaffold_1:40402987-40403299(-) (11)	NA	O61122	Serine/threonine-protein kinase svkA	AT3G15220.1	Protein kinase superfamily protein 	LOC_Os07g32400.1	"STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.179.2.S1_s_at	A	A1TS	POPTR_0001s40800	POPTR_0001s40800 (11)	scaffold_1:40406015-40406935(-) (11)	POPTR_0011s11710 (6)	O61122	Serine/threonine-protein kinase svkA	AT3G15220.1	Protein kinase superfamily protein 	LOC_Os07g32400.1	"STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1790.1.S1_at	A	A1TS	POPTR_0002s05610	POPTR_0002s05610 (11)	scaffold_2:3683467-3684056(+) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT2G43040.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os12g37780.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr5g026970.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1791.1.A1_at	A	A1TS	POPTR_0001s21670	POPTR_0001s21670 (11)	scaffold_1:20222599-20222822(-) (11)	NA	Q8BKU8	Transmembrane protein 87B	AT2G01070.1	Lung seven transmembrane receptor family protein 	LOC_Os11g34360.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr2g007860.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
Ptp.1794.1.S1_at	A	A1TS	POPTR_0010s19570	POPTR_0010s19570 (11)	scaffold_10:17462175-17463489(+) (11)	POPTR_0008s06890 (6)	Q9P6P3	Serine/threonine-protein kinase ppk15	AT2G40120.1	Protein kinase superfamily protein 	LOC_Os01g61620.1	"protein kinase family protein, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1795.1.A1_at	A	A1TS	POPTR_0013s12990	POPTR_0013s12990 (11)	scaffold_13:13575691-13577666(+) (11)	NA	Q9UUC8	"60S ribosomal protein L51, mitochondrial"	AT3G59650.1	mitochondrial ribosomal protein L51/S25/CI-B8 family protein 	LOC_Os03g10930.2	"ribosomal protein L51, putative, expressed"	Medtr8g026240.1	Mitochondrial ribosome 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1797.2.A1_s_at	A	A1TS	POPTR_0007s10200	POPTR_0007s10200 (11)	scaffold_7:9955365-9955407(-) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT4G37470.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g32270.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g099190.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.180.1.S1_s_at	A	A1TS	POPTR_0008s07270	POPTR_0008s07270 (11)	scaffold_8:4431290-4431662(-) (11)	NA	Q8H1T3	"Ferritin-2, chloroplastic"	AT3G11050.1	ferritin 2 	LOC_Os12g01530.2	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr5g090670.1	Rubrerythrin; Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
Ptp.1800.1.A1_at	A	A1TS	POPTR_0003s15630	POPTR_0003s15630 (11)	scaffold_3:15369104-15371482(-) (11)	NA	O96623	Actin-related protein 2/3 complex subunit 2	AT1G30825.1	"Arp2/3 complex, 34 kD subunit p34-Arc "	LOC_Os01g46580.1	"actin-related protein 2/3 complex subunit 2, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
Ptp.1801.1.A1_at	A	A1TS	POPTR_0010s06200	POPTR_0010s06200 (11)	scaffold_10:7615162-7615579(+) (11)	NA	NA	NA	AT1G24480.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g02600.1	"methyltransferase domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1802.1.A1_s_at	A	A1TS	POPTR_0015s05180	POPTR_0015s05180 (11)	scaffold_15:5536424-5536572(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G01940.1	C2H2-like zinc finger protein 	LOC_Os09g27650.2	"ZOS9-14 - C2H2 zinc finger protein, expressed"	Medtr1g079070.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1805.1.A1_s_at	A	A1TS	POPTR_0003s16080	POPTR_0003s16080 (11)	scaffold_3:15692464-15692886(+) (11)	NA	Q8VYZ0	E3 ubiquitin-protein ligase ORTHRUS 2	AT1G57820.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01230.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g159770.1	"Zinc finger, RING-type; SRA-YDG; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1806.1.S1_s_at	A	A1TS	POPTR_0006s08630	POPTR_0006s08630 (11)	scaffold_6:6312264-6312762(-) (11)	NA	O80932	Expansin-A3	AT2G37640.1	Barwin-like endoglucanases superfamily protein 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1807.1.S1_at	A	A1TS	POPTR_0014s07900	POPTR_0014s07900 (11)	scaffold_14:5866523-5868132(-) (11)	NA	P58137	Acyl-coenzyme A thioesterase 8	AT1G01710.1	Acyl-CoA thioesterase family protein 	LOC_Os04g47120.1	"acyl-CoA thioesterase 2, putative, expressed"	NA	NA	GO:0006637|acyl-CoA metabolic process	GO:0016291|acyl-CoA thioesterase activity	NA
Ptp.1810.1.A1_at	A	A1TS	POPTR_0004s15070	POPTR_0004s15070 (9)	scaffold_4:15744601-15745358(+) (9)	NA	NA	NA	AT2G15730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr3g148170.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1816.1.A1_at	A	A1TS	POPTR_0001s29620	POPTR_0001s29620 (11)	scaffold_1:28285597-28286449(+) (11)	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
Ptp.1818.1.A1_at	A	A1TS	POPTR_0001s18590	POPTR_0001s18590 (10)	scaffold_1:15630281-15631706(+) (10)	NA	Q2V4B9	Probable plastidic glucose transporter 3	AT1G79820.2	Major facilitator superfamily protein 	LOC_Os02g17500.3	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.1819.1.S1_at	A	A1TS	POPTR_0001s00860	POPTR_0001s00860 (11)	scaffold_1:712716-713734(-) (11)	NA	Q0WWQ1	Autophagy-related protein 3	AT5G61500.1	autophagy 3 (APG3) 	LOC_Os01g10290.2	"autophagy-related protein 3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1820.1.A1_a_at	A	A1TS	POPTR_0013s00280	POPTR_0013s00280 (11)	scaffold_13:67473-67616(+) (11)	NA	Q6P988	Protein notum homolog	AT3G05910.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134700.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1822.1.A1_at	A	A1TS	POPTR_0010s13130	POPTR_0010s13130 (11)	scaffold_10:13016501-13016783(+) (11)	NA	Q9M9C6	Probable protein phosphatase 2C 15	AT1G68410.2	Protein phosphatase 2C family protein 	LOC_Os07g49040.1	"protein phosphotase protein, putative, expressed"	Medtr1g140400.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1824.1.A1_at	A	A1TS	POPTR_0008s08580	POPTR_0008s08580 (10)	scaffold_8:5318464-5318763(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1825.1.A1_s_at	A	A1TS	POPTR_0011s13920	POPTR_0011s13920 (11)	scaffold_11:16543300-16545279(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.1826.1.S1_at	A	A1TS	POPTR_0006s15350	POPTR_0006s15350 (11)	scaffold_6:12715030-12715481(+) (11)	NA	O82201	AP-4 complex subunit sigma	AT2G19790.1	SNARE-like superfamily protein 	LOC_Os08g30480.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr7g118420.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.1828.1.A1_at	A	A1TS	POPTR_0006s18370	POPTR_0006s18370 (11)	scaffold_6:16765377-16765611(+) (11)	NA	NA	NA	AT5G57460.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to 166 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). "	LOC_Os08g14620.1	expressed protein	Medtr8g128860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1829.1.S1_s_at	A	A1TS	POPTR_0004s00900	POPTR_0004s00900 (9)	scaffold_4:430913-430945(+) (9)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.1832.1.A1_at	A	A1MS	POPTR_0006s03340	POPTR_0006s03340 (10)	scaffold_6:2119970-2120387(-) (10)	NA	Q940D0	Two-component response regulator ARR1	AT3G10760.1	Homeodomain-like superfamily protein 	LOC_Os05g34110.1	"homeodomain-related, putative, expressed"	Medtr7g105990.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1833.1.A1_at	A	A1TS	POPTR_0005s17150	POPTR_0005s17150 (11)	scaffold_5:14276342-14276844(-) (11)	NA	Q9SA00	5'-adenylylsulfate reductase-like 4	AT1G34780.1	APR-like 4 	LOC_Os02g51850.1	"OsAPRL3  adenosine 5'-phosphosulfate reductase-like OsAPRL3, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1834.1.A1_at	A	A1TS	POPTR_0003s01380	POPTR_0003s01380 (11)	scaffold_3:1210896-1211139(-) (11)	NA	P54493	Rhomboid protease gluP	AT1G25290.2	RHOMBOID-like protein 10 	LOC_Os09g28100.1	"OsRhmbd15 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
Ptp.1834.1.A1_s_at	A	A1TS	POPTR_0003s01380	POPTR_0003s01380 (11)	scaffold_3:1211160-1211751(-) (11)	NA	P54493	Rhomboid protease gluP	AT1G25290.2	RHOMBOID-like protein 10 	LOC_Os09g28100.1	"OsRhmbd15 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
Ptp.1834.2.A1_at	A	A1MS	POPTR_0003s01380	POPTR_0003s01380 (11)	scaffold_3:1212039-1212352(-) (11)	NA	P54493	Rhomboid protease gluP	AT1G25290.2	RHOMBOID-like protein 10 	LOC_Os09g28100.1	"OsRhmbd15 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
Ptp.1835.1.A1_at	A	A1TS	POPTR_0001s28920	POPTR_0001s28920 (9)	scaffold_1:27661379-27661411(+) (9)	NA	P10566	Mitochondrial RNA-splicing protein MRS3	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1835.1.A1_s_at	A	A1TS	POPTR_0001s28920	POPTR_0001s28920 (11)	scaffold_1:27661272-27661671(+) (11)	NA	P10566	Mitochondrial RNA-splicing protein MRS3	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1837.1.A1_s_at	A	A1TS	POPTR_0001s26460	POPTR_0001s26460 (11)	scaffold_1:25487414-25487787(+) (11)	NA	NA	NA	AT3G20920.1	translocation protein-related 	LOC_Os02g23890.1	"protein transporter, putative, expressed"	Medtr3g080660.1	Translocation protein Sec62 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1837.2.S1_at	A	A1TS	POPTR_0001s26460	POPTR_0001s26460 (11)	scaffold_1:25482088-25483448(+) (11)	NA	NA	NA	AT3G20920.1	translocation protein-related 	LOC_Os02g23890.1	"protein transporter, putative, expressed"	Medtr3g080660.1	Translocation protein Sec62 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1838.2.A1_a_at	A	A1TS	POPTR_0015s00310	POPTR_0015s00310 (10)	scaffold_15:147053-147486(-) (10)	NA	P28493	Pathogenesis-related protein 5	AT5G24620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g32280.1	"thaumatin, putative"	Medtr5g077390.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1839.1.A1_s_at	A	A1TS	POPTR_0008s19920	POPTR_0008s19920 (11)	scaffold_8:13768008-13768377(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.184.1.A1_at	A	A1TS	POPTR_0015s01480	POPTR_0015s01480 (10)	scaffold_15:909886-910290(-) (10)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G49260.2	IQ-domain 21 	LOC_Os03g44610.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g123810.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1842.1.A1_at	A	A1TS	POPTR_0008s23000	POPTR_0008s23000 (9)	scaffold_8:18201325-18201438(+) (9)	NA	Q9FJ17	Protein DEHYDRATION-INDUCED 19 homolog 7	AT5G49230.1	Drought-responsive family protein 	LOC_Os05g28980.1	"drought induced 19 protein, putative, expressed"	Medtr1g100290.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1845.1.A1_at	A	A1TS	POPTR_0001s47010	POPTR_0001s47010 (11)	scaffold_1:47340233-47341113(-) (11)	NA	Q7ZWM6	Obg-like ATPase 1	AT1G30580.1	GTP binding 	LOC_Os08g09940.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1846.1.S1_at	A	A1TS	POPTR_0009s15860	POPTR_0009s15860 (9)	scaffold_9:12171194-12171282(-) (9)//scaffold_9:12180625-12180713(-) (9)	NA	O81081	Laccase-2	AT2G29130.1	laccase 2 	LOC_Os01g62490.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1846.1.S1_s_at	A	A1TS	POPTR_0009s03940	POPTR_0009s03940 (11)	scaffold_9:4524386-4524805(-) (11)	POPTR_0009s15860 (8)//POPTR_0001s18500 (8)//POPTR_0009s15840 (8)	O81081	Laccase-2	AT2G29130.1	laccase 2 	LOC_Os01g62490.1	"laccase precursor protein, putative, expressed"	Medtr7g067600.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1847.1.A1_s_at	A	A2TS	POPTR_0005s18960	POPTR_0007s09950 (11)//POPTR_0005s18960 (11)	scaffold_5:17458650-17459083(+) (11)//scaffold_7:9507614-9508060(-) (11)	NA	P28523	Casein kinase II subunit alpha	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1848.2.A1_a_at	A	A1TS	POPTR_0006s28190	POPTR_0006s28190 (9)	scaffold_6:25966938-25967450(-) (11)	NA	Q9LEW0	Ubiquitin carboxyl-terminal hydrolase 22	AT5G10790.1	ubiquitin-specific protease 22 	LOC_Os04g55360.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr1g017060.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
Ptp.1848.3.S1_at	A	A1MA	POPTR_0006s28190	POPTR_0006s28190 (9)	scaffold_6:25967402-25967550(+) (9)	NA	Q9LEW0	Ubiquitin carboxyl-terminal hydrolase 22	AT5G10790.1	ubiquitin-specific protease 22 	LOC_Os04g55360.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr1g017060.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
Ptp.1849.1.A1_at	A	A1MA	POPTR_0008s08570	POPTR_0008s08570 (10)	scaffold_8:5317168-5317515(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g044030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.185.1.A1_s_at	A	A1TS	POPTR_0006s02270	POPTR_0006s02270 (11)	scaffold_6:1485995-1486288(-) (11)	NA	NA	NA	AT3G22270.1	Topoisomerase II-associated protein PAT1 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1850.1.A1_at	A	A1TS	POPTR_0004s14200	POPTR_0004s14200 (11)	scaffold_4:14686595-14687060(+) (11)	NA	Q6IDS6	E3 ubiquitin-protein ligase makorin	AT3G08505.1	zinc finger (CCCH-type/C3HC4-type RING finger) family protein 	LOC_Os06g21390.2	"Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed"	Medtr3g030250.1	"Zinc finger, CCCH-type; Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.1851.1.S1_s_at	A	A1TS	POPTR_0016s06950	POPTR_0016s06950 (10)	scaffold_16:4743596-4743629(+) (10)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr8g081920.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1851.1.S1_x_at	A	A1TS	POPTR_0016s06950	POPTR_0016s06950 (11)	scaffold_16:4743550-4744071(+) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr8g081920.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1854.1.S1_s_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41431877-41432427(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1854.2.S1_at	A	A1MS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41433089-41433244(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1854.2.S1_s_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41432484-41433037(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1856.1.A1_at	A	A1TS	POPTR_0006s00270	POPTR_0006s00270 (10)	scaffold_6:45640-46174(-) (10)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr2g033600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1857.1.S1_at	A	A1TS	POPTR_0008s08280	POPTR_0008s08280 (9)	scaffold_8:5151806-5152150(-) (9)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT2G40980.1	Protein kinase superfamily protein 	LOC_Os02g29890.1	expressed protein	Medtr7g104330.1	"Tyrosine protein kinase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1858.1.S1_at	A	A1TS	POPTR_0014s01690	POPTR_0014s01690 (10)	scaffold_14:1580920-1581233(+) (10)	NA	Q37145	"Calcium-transporting ATPase 1, chloroplastic"	AT1G27770.1	autoinhibited Ca2+-ATPase 1 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.186.1.A1_s_at	A	A1TS	POPTR_0019s07570	POPTR_0019s07570 (11)	scaffold_19:8624604-8624884(-) (11)	NA	NA	NA	AT2G40480.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr5g091420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1860.1.A1_at	A	A1TS	POPTR_0001s31650	POPTR_0001s31650 (11)	scaffold_1:30022456-30022836(-) (11)	NA	NA	NA	AT3G18800.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g59050.1	hypothetical protein	Medtr3g144210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1861.1.S1_x_at	A	A3TS	POPTR_0010s22620	POPTR_0010s22620 (11)//POPTR_0010s22560 (10)//POPTR_0966s00200 (10)	scaffold_10:19433848-19434345(+) (10)//scaffold_10:19456195-19456707(-) (11)//scaffold_966:1552-8138(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.1861.4.A1_s_at	A	A1TS	POPTR_0966s00200	POPTR_0966s00200 (11)	scaffold_966:2833-3067(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.1863.1.S1_s_at	A	A1TS	POPTR_0015s12790	POPTR_0015s12790 (11)	scaffold_15:13010172-13010469(-) (11)	NA	Q9FEF8	rRNA 2'-O-methyltransferase fibrillarin 1	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.1863.2.S1_at	A	A1MS	POPTR_0015s12790	POPTR_0015s12790 (10)	scaffold_15:13010339-13010597(-) (10)	NA	Q9FEF8	rRNA 2'-O-methyltransferase fibrillarin 1	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.1865.1.A1_at	A	A1TS	POPTR_0014s05810	POPTR_0014s05810 (11)	scaffold_14:4358100-4359241(-) (11)	NA	P38389	Protein transport protein Sec61 subunit beta	AT3G60540.2	"Preprotein translocase Sec, Sec61-beta subunit protein "	LOC_Os12g07490.1	"protein transport protein Sec61 subunit beta, putative, expressed"	Medtr4g134690.1	Sec61beta 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1868.1.A1_s_at	A	A1TS	POPTR_0010s02580	POPTR_0010s02580 (11)	scaffold_10:3007158-3008683(-) (11)	NA	O75506	Heat shock factor-binding protein 1	AT4G15802.1	heat shock factor binding protein 	LOC_Os09g20830.2	"heat shock factor-binding protein 1, putative, expressed"	Medtr7g130390.1	Heat shock factor binding 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1869.2.S1_s_at	A	A1TS	POPTR_0017s14280	POPTR_0017s14280 (11)	scaffold_17:14398494-14400526(+) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr8g140130.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
Ptp.1872.1.S1_at	A	A1TS	POPTR_0003s16270	POPTR_0003s16270 (9)	scaffold_3:15849019-15849386(-) (9)	NA	NA	NA	AT1G03080.1	kinase interacting (KIP1-like) family protein 	LOC_Os03g43684.1	"KIP1, putative, expressed"	Medtr5g033430.1	KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1873.1.S1_at	A	A1TS	POPTR_0012s11250	POPTR_0012s11250 (11)	scaffold_12:11778263-11778907(+) (11)	NA	Q8BMD8	Calcium-binding mitochondrial carrier protein SCaMC-1	AT5G51050.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40200.2	"calcium-binding mitochondrial carrier CBG00135, putative, expressed"	Medtr3g151470.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1876.2.S1_a_at	A	A1TS	POPTR_0008s04200	POPTR_0008s04200 (11)	scaffold_8:2359701-2359928(+) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1877.1.A1_s_at	A	A1TS	POPTR_0011s14710	POPTR_0011s14710 (11)	scaffold_11:17018210-17018731(+) (11)	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1878.2.A1_a_at	A	A1TS	POPTR_0001s43060	POPTR_0001s43060 (11)	scaffold_1:43139453-43139786(+) (11)	NA	Q9N1Q0	Small nuclear ribonucleoprotein-associated protein B'	AT5G44500.2	Small nuclear ribonucleoprotein family protein 	LOC_Os07g07220.1	"LSM domain containing protein, expressed"	Medtr5g099340.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1879.1.S1_s_at	A	A1TS	POPTR_0012s03970	POPTR_0012s03970 (10)	scaffold_12:3185743-3187916(-) (11)	NA	NA	NA	AT1G48440.1	B-cell receptor-associated 31-like 	LOC_Os03g13750.1	"erwinia induced protein 2, putative, expressed"	Medtr6g080520.1	"T1N15.5, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.188.1.A1_at	A	A1TS	POPTR_0014s13120	POPTR_0014s13120 (11)	scaffold_14:9640752-9643830(-) (11)	NA	Q9LYC2	NPL4-like protein 1	AT3G63000.1	NPL4-like protein 1 	LOC_Os01g27990.1	"NPL4, putative, expressed"	AC235488_3.1	Ubiquitin; NPL4 AC235488.1 4598-10630 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1880.1.A1_at	A	A1TS	POPTR_0006s05380	POPTR_0006s05380 (10)	scaffold_6:3804257-3804815(+) (10)	NA	Q9XFW4	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	AT3G57650.1	lysophosphatidyl acyltransferase 2 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.1881.2.S1_s_at	A	A1TS	POPTR_0017s08610	POPTR_0017s08610 (11)	scaffold_17:7234086-7234243(+) (11)	NA	Q01781	Adenosylhomocysteinase	AT4G13940.1	S-adenosyl-L-homocysteine hydrolase 	LOC_Os11g26850.2	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr3g104810.1	S-adenosyl-L-homocysteine hydrolase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004013|adenosylhomocysteinase activity	NA
Ptp.1886.1.S1_at	A	A1TS	POPTR_0004s16330	POPTR_0004s16330 (9)	scaffold_4:16829450-16830502(+) (11)	NA	Q8GY61	Transcription factor bHLH63	AT4G34530.1	cryptochrome-interacting basic-helix-loop-helix 1 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr3g162340.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.1887.1.S1_at	A	A1TS	POPTR_0002s18230	POPTR_0002s18230 (11)	scaffold_2:14163756-14164634(+) (11)	NA	Q43187	Soluble inorganic pyrophosphatase	AT1G01050.1	pyrophosphorylase 1 	LOC_Os04g59040.1	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr7g146210.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.1888.1.S1_s_at	A	A1TS	POPTR_0002s22220	POPTR_0002s22220 (11)	scaffold_2:18890527-18891024(-) (11)	NA	P27518	"Chlorophyll a-b binding protein 151, chloroplastic"	AT2G05070.1	photosystem II light harvesting complex gene 2.2 	LOC_Os03g39610.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g104980.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1890.1.S1_at	A	A1TS	POPTR_0003s04150	POPTR_0003s04150 (11)	scaffold_3:4843131-4843490(+) (11)	NA	P41381	Eukaryotic initiation factor 4A-8	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os06g48750.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1892.1.S1_x_at	A	A1TS	POPTR_0010s16510	POPTR_0010s16510 (11)	scaffold_10:15445002-15445226(-) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1895.1.S1_at	A	A1TS	POPTR_0002s11250	POPTR_0002s11250 (9)	scaffold_2:8327490-8327869(+) (9)	NA	Q9ZRR5	Tubulin alpha-3 chain	AT1G50010.1	tubulin alpha-2 chain 	LOC_Os03g51600.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr8g102250.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.1897.1.S1_a_at	A	A1TS	POPTR_0003s15140	POPTR_0003s15140 (11)	scaffold_3:15006912-15007192(+) (11)	NA	Q38890	Endoglucanase 25	AT5G49720.1	glycosyl hydrolase 9A1 	LOC_Os03g21210.1	"endoglucanase, putative, expressed"	Medtr2g034060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1898.1.S1_at	A	A1TS	POPTR_0019s09140	POPTR_0019s09140 (11)	scaffold_19:10697402-10698338(-) (11)	NA	Q9XF89	"Chlorophyll a-b binding protein CP26, chloroplastic"	AT4G10340.1	light harvesting complex of photosystem II 5 	LOC_Os11g13890.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g070180.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.19.1.S1_at	A	A1TS	POPTR_0016s08710	POPTR_0016s08710 (11)	scaffold_16:6502611-6503215(-) (11)	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.19.1.S1_x_at	A	A1TS	POPTR_0016s08710	POPTR_0016s08710 (11)	scaffold_16:6502545-6503215(-) (11)	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1902.1.S1_at	A	A1TS	POPTR_0004s05020	POPTR_0004s05020 (11)	scaffold_4:3774540-3775028(+) (11)	NA	Q946Y7	Syntaxin-61	AT1G28490.1	syntaxin of plants 61 	LOC_Os01g73230.1	"syntaxin 6, putative, expressed"	Medtr5g100170.1	Syntaxin/epimorphin family 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
Ptp.1903.1.S1_x_at	A	A1TS	POPTR_0004s17610	POPTR_0004s17610 (11)	scaffold_4:17743689-17744151(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.1903.2.S1_x_at	A	A1TS	POPTR_0002s09370	POPTR_0002s09370 (11)	scaffold_2:6675657-6676704(+) (11)	NA	P33050	Pollen-specific protein C13	AT4G08685.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g22590.1	"POEI24 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	CU651566_3.1	Pollen Ole e 1 allergen and extensin CU651566.9 19800-21791 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1906.1.A1_s_at	A	A1TS	POPTR_0018s11280	POPTR_0018s11280 (11)	scaffold_18:12091279-12093234(+) (11)	NA	NA	NA	AT4G30710.1	Family of unknown function (DUF566)  	LOC_Os09g25500.1	expressed protein	Medtr8g144970.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1909.1.A1_at	A	A1TS	POPTR_0014s03200	POPTR_0014s03200 (11)	scaffold_14:2561376-2561483(-) (11)	NA	Q9SX77	"Uncharacterized protein At1g47420, mitochondrial"	AT1G47420.1	succinate dehydrogenase 5 	LOC_Os04g34100.1	expressed protein	Medtr1g024840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.191.1.A1_at	A	A1TS	POPTR_0002s24910	POPTR_0002s24910 (11)	scaffold_2:22121355-22121603(-) (11)	NA	NA	NA	AT3G07310.1	Protein of unknown function (DUF760) 	LOC_Os11g26890.2	expressed protein	Medtr8g012790.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1912.1.A1_s_at	A	A1TS	POPTR_0005s25830	POPTR_0005s25830 (11)	scaffold_5:24034788-24035165(+) (11)	NA	Q0WSY2	Filament-like plant protein 4	AT1G19835.2	Plant protein of unknown function (DUF869) 	LOC_Os03g14250.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr5g021760.1	"Protein of unknown function DUF869, plant "	GO:0016032|viral reproduction	NA	NA
Ptp.1913.1.A1_at	A	A1TS	POPTR_0001s15170	POPTR_0001s15170 (11)	scaffold_1:12000654-12001185(-) (11)	NA	Q8W4H1	GATA transcription factor 26	AT4G17570.3	GATA transcription factor 26 	LOC_Os04g46020.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g013520.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.1914.1.A1_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5419391-5419563(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
Ptp.1914.1.A1_s_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5419132-5419306(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
Ptp.1914.2.A1_a_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5419299-5419349(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
Ptp.1923.1.A1_s_at	A	A1TS	POPTR_0011s01800	POPTR_0011s01800 (11)	scaffold_11:1406365-1406699(-) (11)//scaffold_11:1616488-1616807(-) (9)	POPTR_0011s01960 (7)	NA	NA	AT4G22190.1	unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). 	LOC_Os11g30430.1	expressed protein	Medtr2g029070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1924.1.A1_at	A	A1TS	POPTR_0003s12380	POPTR_0003s12380 (11)	scaffold_3:12969249-12970002(-) (11)	NA	Q43070	UDP-glucose 4-epimerase	AT1G12780.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 1 	LOC_Os09g35800.1	"UDP-glucose 4-epimerase, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1928.1.A1_at	A	A1TS	POPTR_0018s08470	POPTR_0018s08470 (9)	scaffold_18:9411795-9412772(-) (9)	NA	Q9SMY8	F-box/LRR-repeat protein 15	AT4G33210.1	F-box family protein 	LOC_Os10g25680.1	"OsFBL52 - F-box domain and LRR containing protein, expressed"	Medtr1g019570.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.1930.1.S1_s_at	A	A1TS	POPTR_0008s09450	POPTR_0008s09450 (11)	scaffold_8:5855508-5855714(+) (11)	NA	Q9C5W6	14-3-3-like protein GF14 iota	AT1G26480.1	general regulatory factor 12 	LOC_Os02g36974.4	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.1937.1.A1_s_at	A	A1TS	POPTR_0004s23850	POPTR_0004s23850 (11)	scaffold_4:22478797-22479070(+) (11)	NA	Q91W34	UPF0420 protein C16orf58 homolog	AT5G49820.1	"Protein of unknown function, DUF647 "	LOC_Os05g34650.1	"DUF647 domain containing protein, putative, expressed"	Medtr4g106950.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.194.1.A1_s_at	A	A1TS	POPTR_0010s13060	POPTR_0010s13060 (11)	scaffold_10:12953491-12953598(-) (11)	NA	NA	NA	AT2G01260.1	Protein of unknown function (DUF789) 	LOC_Os01g33000.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1940.2.A1_at	A	A1MS	POPTR_0008s01960	POPTR_0008s01960 (9)	scaffold_8:939179-939339(+) (9)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr4g066990.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.1941.1.A1_at	A	A1TS	POPTR_0001s46000	POPTR_0001s46000 (11)	scaffold_1:46511794-46512015(-) (11)	POPTR_0011s14930 (7)	O65351	Subtilisin-like protease	AT4G10550.1	Subtilase family protein 	LOC_Os06g41880.1	"OsSub51 - Putative Subtilisin homologue, expressed"	Medtr8g086940.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1941.1.A1_s_at	A	A1TS	POPTR_0001s46000	POPTR_0001s46000 (11)	scaffold_1:46511600-46511800(-) (11)	NA	O65351	Subtilisin-like protease	AT4G10550.1	Subtilase family protein 	LOC_Os06g41880.1	"OsSub51 - Putative Subtilisin homologue, expressed"	Medtr8g086940.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1942.1.S1_s_at	A	A1TS	POPTR_0008s00270	POPTR_0008s00270 (11)	scaffold_8:59354-59761(+) (11)	NA	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1943.1.S1_at	A	A1TS	POPTR_0001s13400	POPTR_0001s13400 (11)	scaffold_1:10495533-10495737(-) (11)	NA	O35459	"Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial"	AT5G43280.1	"delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 "	LOC_Os01g70090.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr3g103380.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1944.1.S1_at	A	A1TS	POPTR_0017s02400	POPTR_0017s02400 (11)	scaffold_17:1735160-1735379(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1944.1.S1_s_at	A	A1TS	POPTR_0017s02400	POPTR_0017s02400 (9)	scaffold_17:1729309-1735630(-) (9)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1945.1.S1_s_at	A	A1TS	POPTR_0006s14030	POPTR_0006s14030 (11)	scaffold_6:11295388-11296664(-) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT1G74960.3	fatty acid biosynthesis 1 	LOC_Os07g42420.1	"3-oxoacyl-synthase, putative, expressed"	Medtr8g132860.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.195.1.S1_at	A	A1TS	POPTR_0004s16020	POPTR_0004s16020 (11)	scaffold_4:16488338-16489373(+) (11)	NA	NA	NA	AT1G11755.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os03g10080.1	expressed protein	Medtr5g007400.1	Di-trans-poly-cis-decaprenylcistransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1952.2.S1_s_at	A	A1TS	POPTR_0007s10230	POPTR_0007s10230 (11)	scaffold_7:10070672-10072644(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g099180.1	"Lysine-rich arabinogalactan protein 18 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1953.1.S1_at	A	A1TS	POPTR_0010s08430	POPTR_0010s08430 (11)	scaffold_10:9344971-9345435(+) (11)	NA	NA	NA	AT5G43460.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1954.1.S1_at	A	A1TS	POPTR_0005s09370	POPTR_0005s09370 (11)	scaffold_5:6538938-6539393(-) (11)	NA	P68209	"Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial"	AT5G08300.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1956.1.S1_at	A	A1TS	POPTR_0019s08080	POPTR_0019s08080 (11)	scaffold_19:9469294-9469382(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1956.1.S1_x_at	A	A1TS	POPTR_0019s08080	POPTR_0019s08080 (11)	scaffold_19:9469294-9471997(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1957.1.S1_at	A	A1TS	POPTR_0018s13330	POPTR_0018s13330 (11)	scaffold_18:13690649-13693082(-) (11)	NA	Q8LFQ6	Glutaredoxin-C4	AT5G20500.1	Glutaredoxin family protein 	LOC_Os06g44910.1	"OsGrx_C4 - glutaredoxin subgroup I, expressed"	Medtr2g043290.3	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.1958.1.S1_at	A	A1TS	POPTR_0010s16980	POPTR_0010s16980 (11)	scaffold_10:15756548-15756981(+) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT2G03350.1	"Protein of unknown function, DUF538 "	LOC_Os03g11210.1	"DUF538 domain containing protein, putative, expressed"	Medtr5g046080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1958.1.S1_s_at	A	A1TS	POPTR_0010s16980	POPTR_0010s16980 (11)	scaffold_10:15756518-15756954(+) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT2G03350.1	"Protein of unknown function, DUF538 "	LOC_Os03g11210.1	"DUF538 domain containing protein, putative, expressed"	Medtr5g046080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1959.1.S1_s_at	A	A1TS	POPTR_0021s00290	POPTR_0021s00290 (11)	scaffold_21:88359-89587(+) (11)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.1960.1.A1_s_at	A	A1TS	POPTR_0001s14120	POPTR_0001s14120 (9)	scaffold_1:11077455-11078374(-) (9)	NA	Q9T0H9	"UPF0016 protein 2, chloroplastic"	AT4G13590.1	Uncharacterized protein family (UPF0016) 	LOC_Os11g34180.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr5g009920.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
Ptp.1962.1.S1_s_at	A	A1TS	POPTR_0018s07370	POPTR_0018s07370 (11)	scaffold_18:7609181-7609488(-) (11)	NA	Q9SZA3	Eukaryotic translation initiation factor 3 subunit K	AT4G33250.1	eukaryotic translation initiation factor 3K 	LOC_Os03g08450.1	"eukaryotic translation initiation factor 3 subunit K, putative, expressed"	Medtr8g133200.1	SAC3/GANP; Eukaryotic translation initiation factor 3 subunit 12; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1963.1.S1_at	A	A1TS	POPTR_0002s03600	POPTR_0002s03600 (9)	scaffold_2:2241363-2241752(+) (9)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT1G47270.2	tubby like protein 6 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1965.1.S1_s_at	A	A1TS	POPTR_0004s01510	POPTR_0004s01510 (11)	scaffold_4:867559-867851(+) (11)	NA	Q9SB81	Peroxidase 42	AT4G21960.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr8g146760.2	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.1967.1.S1_at	A	A1TS	POPTR_0001s32420	POPTR_0001s32420 (11)	scaffold_1:30757173-30758512(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G04910.1	O-fucosyltransferase family protein 	LOC_Os11g29120.1	"growth regulator related protein, putative, expressed"	Medtr1g129940.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1968.1.S1_s_at	A	A1TS	POPTR_0001s38920	POPTR_0001s38920 (11)	scaffold_1:38181422-38182910(+) (11)	NA	Q8L9S1	60S ribosomal protein L18a-1	AT1G17080.1	Ribosomal protein L18ae family 	LOC_Os05g49020.1	"60S ribosomal protein L18a-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1969.1.A1_at	A	A1TS	POPTR_0009s03740	POPTR_0009s03740 (10)	scaffold_9:4356416-4356633(+) (10)	NA	Q9CQT9	Uncharacterized protein C20orf24 homolog	AT5G59410.1	Rab5-interacting family protein 	LOC_Os05g01994.1	"rab5-interacting protein like, putative, expressed"	Medtr2g116740.1	Rab5-interacting 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1970.1.S1_s_at	A	A1TS	POPTR_0002s16390	POPTR_0002s16390 (11)	scaffold_2:12264532-12265055(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G61490.3	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.1971.1.S1_s_at	A	A1TS	POPTR_0009s02590	POPTR_0009s02590 (11)	scaffold_9:3370423-3371169(+) (11)	NA	O23715	Proteasome subunit alpha type-3	AT2G27020.1	20S proteasome alpha subunit G1 	LOC_Os01g59600.2	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1972.1.A1_s_at	A	A1TS	POPTR_0004s11090	POPTR_0004s11090 (10)	scaffold_4:9685416-9688402(-) (11)	NA	NA	NA	AT5G64130.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os01g14690.6	"Lg106, putative, expressed"	Medtr2g077020.1	Lg106-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1973.1.S1_at	A	A1TS	POPTR_0003s17240	POPTR_0003s17240 (11)	scaffold_3:16659802-16662680(-) (11)	NA	Q9P0J0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	AT1G04630.1	GRIM-19 protein 	LOC_Os03g09210.1	"NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1974.1.S1_at	A	A1TS	POPTR_0001s29450	POPTR_0001s29450 (11)	scaffold_1:28122007-28122066(-) (11)	NA	Q9NX01	Thioredoxin-like protein 4B	AT3G24730.1	"mRNA splicing factor, thioredoxin-like U5 snRNP "	LOC_Os11g19220.1	"mitosis protein dim1, putative, expressed"	Medtr3g133440.1	Thioredoxin fold 	GO:0007067|mitosis	NA	GO:0005681|spliceosomal complex
Ptp.1975.1.S1_at	A	A1TS	POPTR_0005s23910	POPTR_0005s23910 (11)	scaffold_5:22612826-22615107(+) (11)	NA	Q9ZQX4	V-type proton ATPase subunit F	AT4G02620.1	vacuolar ATPase subunit F family protein 	LOC_Os02g57854.1	"vacuolar ATP synthase subunit F, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.1976.1.S1_s_at	A	A1TS	POPTR_0001s21520	POPTR_0001s21520 (11)	scaffold_1:20010026-20015934(-) (11)	NA	P43255	COP9 signalosome complex subunit 8	AT4G14110.1	"COP9 signalosome, subunit CSN8 "	LOC_Os04g34930.1	"COP9 signalosome complex subunit 8, putative, expressed"	Medtr2g007990.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1977.1.S1_at	A	A1TS	POPTR_0016s08310	POPTR_0016s08310 (10)	scaffold_16:6128874-6129377(+) (10)	NA	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	Medtr5g026910.1	Ribosomal protein L13e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1978.2.S1_s_at	A	A2TS	POPTR_0002s03530	POPTR_0002s03530 (11)//POPTR_0005s25080 (11)	scaffold_2:2197845-2199312(+) (11)//scaffold_5:23422255-23424081(-) (11)	NA	O23712	Proteasome subunit alpha type-1-B	AT1G47250.1	20S proteasome alpha subunit F2 	LOC_Os02g04100.1	"peptidase, T1 family, putative, expressed"	Medtr4g008970.1	"20S proteasome, A and B subunits "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.198.1.A1_at	A	A1TS	POPTR_0017s04660	POPTR_0017s04660 (11)	scaffold_17:3555377-3555904(-) (11)	NA	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.198.1.A1_s_at	A	A1TS	POPTR_0017s04660	POPTR_0017s04660 (11)	scaffold_17:3555534-3555756(-) (11)	NA	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1980.1.S1_s_at	A	A1TS	POPTR_0012s13610	POPTR_0012s13610 (11)	scaffold_12:13693360-13693508(+) (11)	NA	O88828	"DNA-directed RNA polymerases I, II, and III subunit RPABC2"	AT5G51940.1	RNA polymerase Rpb6 	LOC_Os03g38960.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr7g111100.1	60 kDa inner membrane insertion protein 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006351|""transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1984.1.S1_x_at	A	A1TS	POPTR_0002s05870	POPTR_0002s05870 (11)	scaffold_2:3853179-3853683(+) (11)	NA	Q9ATF5	60S ribosomal protein L18a	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1985.2.A1_s_at	A	A1TS	POPTR_0012s05470	POPTR_0012s05470 (11)	scaffold_12:5126778-5127586(+) (11)	NA	P49592	Protein Dr1 homolog	AT5G23090.1	"nuclear factor Y, subunit B13 "	LOC_Os08g29500.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g115740.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.1986.1.S1_a_at	A	A1TS	POPTR_0015s11780	POPTR_0015s11780 (11)	scaffold_15:12317988-12318352(-) (11)	NA	P41098	60S ribosomal protein L34	AT1G26880.1	Ribosomal protein L34e superfamily protein 	LOC_Os09g24690.1	"60S ribosomal protein L34, putative, expressed"	Medtr7g009550.1	Ribosomal protein L34e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1987.1.A1_at	A	A1TS	POPTR_0004s20640	POPTR_0004s20640 (10)	scaffold_4:20101935-20102975(-) (10)	NA	Q5RAZ5	Non-structural maintenance of chromosomes element 1 homolog	AT5G21140.1	embryo defective 1379 	LOC_Os12g03360.1	"EMB1379, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1989.1.S1_at	A	A1MS	POPTR_0003s20720	POPTR_0003s20720 (9)	scaffold_3:19170693-19171421(-) (9)	NA	O81635	Kinesin-4	AT1G55550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g15540.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.199.1.A1_at	A	A1TS	POPTR_0003s17720	POPTR_0003s17720 (11)	scaffold_3:17022055-17024528(+) (11)	NA	C0QTM4	30S ribosomal protein S15	AT1G80620.1	"S15/NS1, RNA-binding protein "	LOC_Os06g07996.1	ribosomal protein S15 containing protein	Medtr4g006580.1	"Ribosomal protein S15, bacterial chloroplast and mitochondrial type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1990.1.S1_a_at	A	A1TS	POPTR_0019s12210	POPTR_0019s12210 (10)	scaffold_19:13321068-13321328(+) (10)	NA	Q6Z7L8	Rac-like GTP-binding protein 7	AT1G75840.1	RAC-like GTP binding protein 5 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1991.1.S1_at	A	A1TS	POPTR_0010s20610	POPTR_0010s20610 (10)	scaffold_10:18124650-18127896(+) (10)	NA	Q945M8	UPF0497 membrane protein At3g53850	AT3G53850.1	Uncharacterised protein family (UPF0497) 	LOC_Os09g07480.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g018930.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1994.1.S1_at	A	A1TS	POPTR_0004s22620	POPTR_0004s22620 (11)	scaffold_11:803520-807087(+) (11)//scaffold_4:21486376-21489933(+) (11)	POPTR_0011s01280 (7)	O65199	"Superoxide dismutase [Cu-Zn], chloroplastic"	AT2G28190.1	copper/zinc superoxide dismutase 2 	LOC_Os08g44770.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr4g076170.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
Ptp.1995.1.S1_s_at	A	A1TS	POPTR_0006s04320	POPTR_0006s04320 (11)	scaffold_6:2948499-2948868(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os03g23010.1	expressed protein	Medtr7g107690.1	"ERD15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1996.1.S1_s_at	A	A1TS	POPTR_0006s03180	POPTR_0006s03180 (11)	scaffold_6:2001953-2002530(-) (11)	NA	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.1997.1.S1_x_at	A	A1TS	POPTR_0005s04630	POPTR_0005s04630 (11)	scaffold_5:3102263-3103886(-) (11)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT5G27200.1	acyl carrier protein 5 	LOC_Os12g34890.1	"acyl carrier protein, putative, expressed"	Medtr2g025430.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
Ptp.1998.1.S1_at	A	A1TS	POPTR_0009s11880	POPTR_0009s11880 (11)	scaffold_9:9783986-9785218(+) (11)	NA	Q42599	"NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial"	AT1G79010.1	Alpha-helical ferredoxin 	LOC_Os03g56300.1	"4Fe-4S binding domain containing protein, expressed"	AC225519_18.1	Alpha-helical ferredoxin AC225519.5 76420-84409 E EGN_Mt090430 200	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.1999.2.S1_s_at	A	A1TS	POPTR_0008s03800	POPTR_0008s03800 (11)	scaffold_8:2045932-2046626(-) (11)	NA	Q9LZG0	Adenosine kinase 2	AT5G03300.1	adenosine kinase 2 	LOC_Os02g41590.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2.1.S1_s_at	A	A1TS	POPTR_0011s15930	POPTR_0011s15930 (11)	scaffold_11:17939106-17940510(+) (11)	NA	Q9SA78	Coatomer subunit epsilon-1	AT1G30630.1	Coatomer epsilon subunit 	LOC_Os04g52270.1	"coatomer subunit epsilon, putative, expressed"	NA	NA	"GO:0006890|""retrograde vesicle-mediated transport, Golgi to ER"""	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
Ptp.20.1.A1_at	A	A1TS	POPTR_0006s20710	POPTR_0006s20710 (11)	scaffold_6:19695708-19695859(-) (11)	NA	O81221	Actin	AT3G12110.1	actin-11 	LOC_Os03g50885.1	"actin, putative, expressed"	Medtr7g111960.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.2000.1.S1_at	A	A1TS	POPTR_0005s11200	POPTR_0005s11200 (11)	scaffold_5:8119625-8120562(-) (11)	NA	NA	NA	AT4G35920.2	PLAC8 family protein 	LOC_Os03g06120.3	"PLAC8 family protein, expressed"	Medtr5g022570.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2001.1.S1_s_at	A	A1TS	POPTR_0004s16990	POPTR_0004s16990 (11)	scaffold_4:17349947-17352075(+) (11)	NA	NA	NA	AT4G34700.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os06g50000.1	"LYR motif containing protein, putative, expressed"	Medtr3g163080.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2003.1.A1_x_at	A	A1TS	POPTR_0008s05000	POPTR_0008s05000 (11)	scaffold_8:2910794-2912384(+) (11)	NA	Q9AT35	60S ribosomal protein L23a	AT3G55280.2	ribosomal protein L23AB 	LOC_Os01g24690.1	"60S ribosomal protein L23A, putative, expressed"	Medtr4g079040.1	"Ribosomal protein L23, N-terminal; Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2004.1.A1_at	A	A1TS	POPTR_0003s04140	POPTR_0003s04140 (11)	scaffold_3:4800333-4800979(-) (11)	NA	Q8RWN9	"Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial"	AT3G13930.1	"Dihydrolipoamide acetyltransferase, long form protein "	LOC_Os06g01630.5	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
Ptp.2005.1.S1_at	A	A1TS	POPTR_0001s31850	POPTR_0001s31850 (10)	scaffold_1:30209736-30210083(+) (11)	NA	Q9M3V8	40S ribosomal protein S6	AT5G10360.1	Ribosomal protein S6e 	LOC_Os03g27260.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2006.1.S1_s_at	A	A1MS	POPTR_0001s13730	POPTR_0001s13730 (11)	scaffold_1:10796996-10798770(-) (11)	NA	Q9C7F5	Nuclear transport factor 2	AT1G27970.1	nuclear transport factor 2B 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
Ptp.2007.1.S1_s_at	A	A1TS	POPTR_0001s09090	POPTR_0001s09090 (10)	scaffold_1:6951061-6951360(-) (10)	NA	P93788	Remorin	AT5G23750.2	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2008.1.S1_at	A	A1TS	POPTR_0017s14180	POPTR_0017s14180 (11)	scaffold_17:14332632-14333934(-) (11)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os02g28810.2	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	GO:0005622|intracellular
Ptp.2009.1.S1_a_at	A	A1TS	POPTR_0003s13340	POPTR_0003s13340 (11)	scaffold_3:13741048-13741093(+) (11)	NA	Q9SUR3	Reticulon-like protein B1	AT4G23630.1	VIRB2-interacting protein 1 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.2010.1.S1_at	A	A1TS	POPTR_0008s09940	POPTR_0008s09940 (10)	scaffold_8:6155255-6156879(-) (10)	NA	O48649	ADP-ribosylation factor 1	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2012.1.S1_at	A	A1TS	POPTR_0008s14060	POPTR_0008s14060 (11)	scaffold_8:9292157-9293206(-) (11)	NA	NA	NA	AT2G37870.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g62980.1	"LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2014.1.S1_s_at	A	A1TS	POPTR_0006s15400	POPTR_0006s15400 (11)	scaffold_6:12763045-12763690(+) (11)	NA	P12955	Xaa-Pro dipeptidase	AT4G29490.1	Metallopeptidase M24 family protein 	LOC_Os02g13140.1	"xaa-Pro dipeptidase, putative, expressed"	Medtr4g160750.1	Peptidase M24 	GO:0009987|cellular process	NA	NA
Ptp.2015.1.S1_at	A	A1TS	POPTR_0003s06780	POPTR_0003s06780 (11)	scaffold_3:8307749-8308048(-) (11)	NA	NA	NA	AT3G14170.1	Plant protein of unknown function (DUF936) 	LOC_Os03g08390.2	expressed protein	Medtr5g035680.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2016.1.S1_a_at	A	A1TS	POPTR_0002s14130	POPTR_0002s14130 (11)	scaffold_2:10483884-10484561(+) (11)	NA	Q9M5M1	40S ribosomal protein S11	AT5G23740.1	ribosomal protein S11-beta 	LOC_Os08g10608.1	"ribosomal protein S17, putative, expressed"	Medtr8g092770.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2017.1.A1_s_at	A	A1TS	POPTR_0016s10780	POPTR_0016s10780 (11)	scaffold_16:9145083-9145485(-) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2018.1.S1_a_at	A	A1TS	POPTR_0010s05590	POPTR_0010s05590 (11)	scaffold_10:7028452-7028557(-) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr3g114720.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2018.2.A1_s_at	A	A1TS	POPTR_0005s03640	POPTR_0005s03640 (11)	scaffold_5:2425225-2425701(-) (11)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT1G09000.1	NPK1-related protein kinase 1 	LOC_Os09g21510.1	"STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr7g139260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2019.1.A1_at	A	A1TS	POPTR_0001s30470	POPTR_0001s30470 (10)	scaffold_1:28929604-28929968(-) (10)	NA	NA	NA	AT3G19540.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2020.1.S1_s_at	A	A1TS	POPTR_0012s09310	POPTR_0012s09310 (11)	scaffold_12:10345948-10346140(-) (11)	NA	Q9C5M8	Probable pectate lyase 18	AT4G24780.2	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2021.1.S1_at	A	A1TS	POPTR_0001s04360	POPTR_0001s04360 (9)	scaffold_1:3457684-3458745(+) (9)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT3G13560.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os07g38930.5	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g134060.1	"Glycoside hydrolase, family 17; X8; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2022.1.S1_s_at	A	A1TS	POPTR_0001s34170	POPTR_0001s34170 (11)	scaffold_1:32305618-32306583(-) (11)	NA	Q8MR62	Viral IAP-associated factor homolog	AT5G14240.1	Thioredoxin superfamily protein 	LOC_Os01g08960.1	"phosducin-like protein 3, putative, expressed"	Medtr2g038730.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2023.1.S1_s_at	A	A1TS	POPTR_0006s01890	POPTR_0006s01890 (11)	scaffold_6:1136863-1137315(-) (11)	NA	NA	NA	AT4G16400.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2026.1.S1_s_at	A	A1TS	POPTR_0008s09150	POPTR_0008s09150 (11)	scaffold_8:5672716-5673424(-) (11)	NA	Q9SC12	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
Ptp.2027.1.A1_at	A	A1TS	POPTR_0006s00460	POPTR_0006s00460 (11)	scaffold_6:220284-220439(-) (11)	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30210.1	expressed protein	Medtr2g033120.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2028.1.S1_at	A	A1TS	POPTR_0004s24110	POPTR_0004s24110 (10)	scaffold_4:22844442-22844859(-) (10)	NA	P33543	Putative kinase-like protein TMKL1	AT5G07620.1	Protein kinase superfamily protein 	LOC_Os04g46320.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g050080.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2029.1.A1_at	A	A1TS	POPTR_0002s24090	POPTR_0002s24090 (11)	scaffold_2:21533297-21534075(-) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07380.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.203.1.S1_s_at	A	A1TS	POPTR_0008s04070	POPTR_0008s04070 (11)	scaffold_8:2270774-2271039(+) (11)	NA	Q12893	Transmembrane protein 115	AT3G07950.1	rhomboid protein-related 	LOC_Os03g24390.1	"OsRhmbd8 - Putative Rhomboid homologue, expressed"	Medtr1g121420.1	"Transmembrane protein 115, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2031.1.S1_at	A	A1MS	POPTR_0002s08940	POPTR_0002s08940 (11)	scaffold_2:6319012-6319264(-) (11)	NA	NA	NA	AT4G08460.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.1	expressed protein	Medtr3g098400.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2032.1.A1_at	A	A1TS	POPTR_0015s14960	POPTR_0015s14960 (9)	scaffold_15:14359866-14360607(+) (9)	NA	Q93Y22	Coatomer subunit delta	AT5G05010.2	clathrin adaptor complexes medium subunit family protein 	LOC_Os05g24594.1	"coatomer subunit delta, putative, expressed"	Medtr2g122280.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.2033.1.A1_at	A	A1TS	POPTR_0005s23200	POPTR_0005s23200 (9)	scaffold_5:22037701-22038235(-) (9)	NA	Q8SSN5	"N-alpha-acetyltransferase 20, NatB catalytic subunit"	AT1G03150.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g49230.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g143670.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.2034.1.A1_at	A	A1TS	POPTR_0003s07610	POPTR_0003s07610 (9)	scaffold_3:9154857-9155530(+) (9)	NA	P49307	Rhizopine catabolism protein mocA	AT4G17370.1	Oxidoreductase family protein 	LOC_Os08g05280.1	"oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed"	Medtr8g105540.1	Bacterial glucose-fructose oxidoreductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2035.1.S1_s_at	A	A1TS	POPTR_0015s01160	POPTR_0015s01160 (11)	scaffold_15:717413-717912(-) (11)	NA	Q8LAP8	Dof zinc finger protein DOF4.6	AT4G24060.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os04g47990.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2036.1.S1_at	A	A1TS	POPTR_0001s34020	POPTR_0001s34020 (9)	scaffold_1:32167362-32167464(+) (9)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT3G01840.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g093120.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2036.1.S1_s_at	A	A1TS	POPTR_0001s34020	POPTR_0001s34020 (11)	scaffold_1:32166956-32167322(+) (11)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT3G01840.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g093120.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2037.1.S1_x_at	A	A1TS	POPTR_0002s04420	POPTR_0002s04420 (11)	scaffold_2:2770733-2772629(+) (11)	NA	P31674	40S ribosomal protein S15	AT5G09500.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2039.1.S1_s_at	A	A1TS	POPTR_0014s01840	POPTR_0014s01840 (11)	scaffold_14:1695331-1696475(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2039.2.S1_x_at	A	A1TS	POPTR_0002s12100	POPTR_0002s12100 (11)	scaffold_2:8984936-8985883(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.204.1.A1_at	A	A1TA	POPTR_0001s37630	POPTR_0001s37630 (10)	scaffold_1:36594089-36594413(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2046.1.A1_at	A	A1TS	POPTR_0002s03550	POPTR_0002s03550 (9)	scaffold_2:2210038-2210383(-) (9)	NA	Q54JC2	Uncharacterized protein DDB_G0288155	AT1G19580.1	gamma carbonic anhydrase 1 	LOC_Os12g07220.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
Ptp.2048.2.S1_at	A	A1TS	POPTR_0014s07170	POPTR_0014s07170 (11)	scaffold_14:5423298-5424178(+) (11)	NA	NA	NA	AT4G00752.1	UBX domain-containing protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2048.3.A1_a_at	A	A1TS	POPTR_0014s07170	POPTR_0014s07170 (11)	scaffold_14:5426817-5427992(+) (11)	NA	NA	NA	AT4G00752.1	UBX domain-containing protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2049.1.A1_at	A	A1TS	POPTR_0012s00720	POPTR_0012s00720 (11)	scaffold_12:398086-398341(-) (11)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.205.1.A1_at	A	A1TS	POPTR_0006s09200	POPTR_0006s09200 (11)	scaffold_6:6787959-6788099(+) (11)	NA	P93394	Uracil phosphoribosyltransferase	AT3G53900.2	uracil phosphoribosyltransferase 	LOC_Os05g38170.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.205.3.A1_s_at	A	A1TS	POPTR_0006s09200	POPTR_0006s09200 (11)	scaffold_6:6787561-6787736(+) (11)	NA	P93394	Uracil phosphoribosyltransferase	AT3G53900.2	uracil phosphoribosyltransferase 	LOC_Os05g38170.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.2050.1.A1_s_at	A	A1TS	POPTR_0017s13810	POPTR_0017s13810 (11)	scaffold_17:14039005-14039693(+) (11)//scaffold_571:12542-13232(-) (10)	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.2051.1.S1_at	A	A1TS	POPTR_0010s19940	POPTR_0010s19940 (11)	scaffold_10:17702647-17703484(+) (11)	NA	O04202	Eukaryotic translation initiation factor 3 subunit F	AT2G39990.1	eukaryotic translation initiation factor 2 	LOC_Os05g01450.1	"eukaryotic translation initiation factor 3 subunit F, putative, expressed"	Medtr5g089340.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2052.1.S1_at	A	A1TS	POPTR_0003s20450	POPTR_0003s20450 (11)	scaffold_3:18945690-18946056(+) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr2g117700.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2052.1.S1_s_at	A	A1TS	POPTR_0003s20450	POPTR_0003s20450 (11)	scaffold_3:18945811-18946027(+) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr2g117700.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2053.1.A1_at	A	A1TS	POPTR_0001s36720	POPTR_0001s36720 (11)	scaffold_1:35443158-35443318(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.2054.1.S1_s_at	A	A1TS	POPTR_0003s17980	POPTR_0003s17980 (11)	scaffold_3:17213099-17214033(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G15950.1	cinnamoyl coa reductase 1 	LOC_Os08g34280.1	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2055.1.S1_at	A	A1TS	POPTR_0013s06220	POPTR_0013s06220 (9)	scaffold_13:4609904-4611379(+) (9)	NA	NA	NA	AT5G17840.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os03g45344.1	expressed protein	Medtr7g103500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2056.1.S1_s_at	A	A1TS	POPTR_0002s25450	POPTR_0002s25450 (11)	scaffold_2:22504740-22505611(-) (11)	NA	A1A5K2	CLIP-associating protein 1-B	AT2G20190.1	CLIP-associated protein 	LOC_Os04g42840.1	"HEAT repeat family protein, putative, expressed"	Medtr7g117940.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2058.2.A1_a_at	A	A1TS	POPTR_0012s07470	POPTR_0012s07470 (11)	scaffold_12:8390635-8392675(+) (11)	NA	Q9LV17	Transcription factor bHLH79	AT5G62610.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g09590.1	"bHLH transcription factor, putative"	Medtr8g074580.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.2062.1.A1_at	A	A1TS	POPTR_0012s03790	POPTR_0012s03790 (11)	scaffold_12:3031157-3032408(+) (11)	NA	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0004371|glycerone kinase activity	NA
Ptp.2063.1.A1_s_at	A	A1TS	POPTR_0001s23520	POPTR_0001s23520 (11)	scaffold_1:22915465-22915791(+) (11)	POPTR_0009s02770 (6)	Q86HW6	Probable serine/threonine-protein kinase DDB_G0276461	AT2G32850.2	Protein kinase superfamily protein 	LOC_Os02g37880.3	"cyclin G-associated kinase, putative, expressed"	Medtr8g115300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2064.1.S1_at	A	A1TS	POPTR_0013s02950	POPTR_0013s02950 (11)	scaffold_13:1791355-1791590(+) (11)	NA	Q9ZNV9	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os08g44350.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr1g098840.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
Ptp.2065.1.A1_at	A	A1TS	POPTR_0001s10120	POPTR_0001s10120 (11)	scaffold_1:7830601-7830783(-) (11)	NA	P13240	Disease resistance response protein 206	AT4G23690.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44930.1	"dirigent, putative, expressed"	Medtr8g137520.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2066.1.S1_s_at	A	A1TS	POPTR_0003s11920	POPTR_0003s11920 (11)	scaffold_3:12642763-12644746(-) (11)	NA	O64644	Histone deacetylase complex subunit SAP18	AT2G45640.1	SIN3 associated polypeptide P18 	LOC_Os02g02960.4	"histone deacetylase complex subunit SAP18, putative, expressed"	AC233100_3.1	Sin3 associated polypeptide p18 AC233100.6 16242-12510 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2069.1.S1_at	A	A1TS	POPTR_0008s16760	POPTR_0008s16760 (9)	scaffold_8:11284565-11289166(+) (9)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G14350.3	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.2070.1.S1_s_at	A	A1TS	POPTR_0001s34530	POPTR_0001s34530 (11)	scaffold_1:32703929-32704449(+) (11)	NA	Q96PB1	CAS1 domain-containing protein 1	AT2G34410.2	O-acetyltransferase family protein 	LOC_Os01g44040.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2071.1.S1_at	A	A1TS	POPTR_0009s10220	POPTR_0009s10220 (9)	scaffold_9:8835615-8835940(+) (9)	NA	P42731	Polyadenylate-binding protein 2	AT1G49760.2	poly(A) binding protein 8 	LOC_Os04g42600.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
Ptp.2072.1.S1_at	A	A1TS	POPTR_0010s21600	POPTR_0010s21600 (11)	scaffold_10:18813502-18813834(+) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2072.2.S1_s_at	A	A2TS	POPTR_0008s05160	POPTR_0008s05160 (11)//POPTR_0010s21600 (11)	scaffold_10:18811566-18812854(+) (11)//scaffold_8:2997157-2998385(-) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2077.1.S1_s_at	A	A1TS	POPTR_0001s34500	POPTR_0001s34500 (11)	scaffold_1:32620506-32621163(+) (11)	NA	Q5RBT0	Programmed cell death protein 5	AT1G29850.1	double-stranded DNA-binding family protein 	LOC_Os05g47446.1	expressed protein	NA	NA	NA	GO:0003677|DNA binding	NA
Ptp.2078.2.S1_s_at	A	A1TS	POPTR_0010s09490	POPTR_0010s09490 (11)	scaffold_10:10294828-10296888(+) (11)	NA	O23714	Proteasome subunit beta type-2-A	AT3G22630.1	20S proteasome beta subunit D1 	LOC_Os03g48930.1	"peptidase, T1 family, putative, expressed"	Medtr5g007000.1	"20S proteasome, A and B subunits "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.2079.1.A1_at	A	A1TS	POPTR_0001s08250	POPTR_0001s08250 (9)	scaffold_1:6296130-6296626(+) (9)	NA	NA	NA	AT1G12450.1	SNARE associated Golgi protein family 	LOC_Os07g28440.1	"SNARE associated Golgi protein, putative, expressed"	Medtr8g106510.1	"F5O11.19, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2081.1.A1_s_at	A	A1TS	POPTR_0002s07290	POPTR_0002s07290 (11)	scaffold_2:4980391-4981053(-) (11)	NA	P25141	Alcohol dehydrogenase 1	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2083.1.A1_at	A	A1TS	POPTR_0002s19720	POPTR_0002s19720 (10)	scaffold_2:15656434-15656653(-) (10)	NA	P24068	Ocs element-binding factor 1	AT3G62420.1	basic region/leucine zipper motif 53 	LOC_Os12g37415.1	expressed protein	Medtr1g106720.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.2084.1.S1_s_at	A	A1TS	POPTR_0005s07860	POPTR_0005s07860 (11)	scaffold_5:5391016-5391249(-) (11)	NA	NA	NA	AT2G22170.1	"Lipase/lipooxygenase, PLAT/LH2 family protein "	LOC_Os06g11812.1	"wound/stress protein, putative, expressed"	Medtr3g101350.1	"Lipase/lipooxygenase, PLAT/LH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2085.2.S1_s_at	A	A2TS	POPTR_0002s09770	POPTR_0002s09770 (11)//POPTR_0005s17120 (11)	scaffold_2:7005602-7005651(-) (11)//scaffold_5:14262859-14262908(-) (11)	NA	P93212	14-3-3 protein 7	AT1G26480.1	general regulatory factor 12 	LOC_Os03g50290.3	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.2087.1.S1_s_at	A	A1TS	POPTR_0008s16840	POPTR_0008s16840 (11)	scaffold_8:11325831-11325931(-) (11)	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os02g40880.1	"ribosomal protein L14, putative, expressed"	Medtr8g138420.1	Ribosomal protein L14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2089.1.S1_x_at	A	A1TS	POPTR_0010s22410	POPTR_0010s22410 (11)	scaffold_10:19348660-19349598(-) (11)	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.209.1.S1_s_at	A	A1TS	POPTR_0004s20450	POPTR_0004s20450 (11)	scaffold_4:20015255-20015618(-) (11)	NA	O42395	Cellular nucleic acid-binding protein	AT3G43590.1	zinc knuckle (CCHC-type) family protein 	LOC_Os11g36480.2	"zinc knuckle domain containing protein, expressed"	Medtr3g110690.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2091.1.S1_at	A	A1TS	POPTR_0015s13200	POPTR_0015s13200 (11)	scaffold_15:13259139-13259634(-) (11)	NA	Q5RAI8	Cleavage and polyadenylation specificity factor subunit 5	AT4G25550.1	"Cleavage/polyadenylation specificity factor, 25kDa subunit "	LOC_Os04g58640.1	"cleavage and polyadenylation specificity factor subunit 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2093.1.S1_at	A	A1TS	POPTR_0004s23140	POPTR_0004s23140 (11)	scaffold_4:21907878-21911870(-) (11)	NA	Q93W20	"NifU-like protein 2, chloroplastic"	AT5G49940.1	NIFU-like protein 2 	LOC_Os11g07916.1	"nifU, putative, expressed"	Medtr2g041590.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
Ptp.2094.3.S1_a_at	A	A1TS	POPTR_0008s16790	POPTR_0008s16790 (11)	scaffold_8:11299669-11300304(+) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G14340.1	casein kinase I 	LOC_Os02g40860.1	"CK1_CaseinKinase_1.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2095.1.S1_at	A	A1TS	POPTR_0010s06750	POPTR_0010s06750 (11)	scaffold_10:8032742-8034509(+) (11)	NA	Q54I90	"NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial"	AT5G08530.1	51 kDa subunit of complex I 	LOC_Os07g45090.1	"NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed"	Medtr1g043800.1	"Respiratory-chain NADH dehydrogenase, 51 kDa subunit "	NA	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051287|NAD or NADH binding||GO:0010181|FMN binding||GO:0051539|""4 iron, 4 sulfur cluster binding"""	NA
Ptp.2097.1.S1_s_at	A	A3TS	POPTR_0014s19300	POPTR_0014s19300 (11)//POPTR_0014s19510 (11)//POPTR_0014s19070 (10)	scaffold_14:16826099-16826431(-) (10)//scaffold_14:17202190-17202522(-) (11)//scaffold_14:17327976-17328308(+) (11)//scaffold_14:17362402-17362734(+) (11)	POPTR_0014s19530 (8)	O95243	Methyl-CpG-binding domain protein 4	AT3G07930.3	DNA glycosylase superfamily protein 	LOC_Os09g01290.1	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	NA	NA	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
Ptp.2097.2.S1_at	A	A1TS	POPTR_0014s19510	POPTR_0014s19510 (11)	scaffold_14:17328430-17328637(+) (11)//scaffold_14:17362856-17363063(+) (11)	NA	O95243	Methyl-CpG-binding domain protein 4	AT3G07930.3	DNA glycosylase superfamily protein 	LOC_Os09g01290.2	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	NA	NA	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
Ptp.2098.2.S1_at	A	A1TS	POPTR_0002s10480	POPTR_0002s10480 (11)	scaffold_2:7562308-7562344(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G09750.1	Eukaryotic aspartyl protease family protein 	LOC_Os03g08790.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g149190.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2099.1.S1_s_at	A	A1TS	POPTR_0008s09430	POPTR_0008s09430 (9)	scaffold_8:5840879-5841157(-) (9)	NA	Q7Z494	Nephrocystin-3	AT3G27960.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g125600.1	"kinesin light chain-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.21.1.S1_s_at	A	A1TS	POPTR_0004s20020	POPTR_0004s20020 (9)	scaffold_4:19673006-19673120(+) (9)	NA	Q6V9I6	Histone deacetylase HDT1	AT3G44750.2	histone deacetylase 3 	LOC_Os05g51830.1	"ZOS5-12 - C2H2 zinc finger protein, expressed"	Medtr4g073420.1	"Histone deacetylase HDT1, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.2101.1.S1_at	A	A1TS	POPTR_0005s23280	POPTR_0005s23280 (11)	scaffold_5:22104001-22104988(+) (11)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2101.1.S1_x_at	A	A1TS	POPTR_0005s23280	POPTR_0005s23280 (11)	scaffold_5:22104001-22105088(+) (11)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2102.1.S1_s_at	A	A1TS	POPTR_0014s14370	POPTR_0014s14370 (10)	scaffold_14:10522502-10522871(-) (10)	NA	Q9MA41	Chitinase-like protein 1	AT1G05850.1	Chitinase family protein 	LOC_Os09g32080.2	"CHIT13 - Chitinase family protein precursor, expressed"	Medtr7g021450.1	"Glycoside hydrolase, family 19 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
Ptp.2104.1.A1_s_at	A	A1TS	POPTR_0003s15220	POPTR_0003s15220 (11)	scaffold_3:15071901-15072370(-) (11)	NA	Q9Y253	DNA polymerase eta	AT5G44740.2	Y-family DNA polymerase H 	LOC_Os01g55300.1	"DNA-directed polymerase, putative, expressed"	AC235671_13.1	UMUC-like DNA-repair protein AC235671.2 55734-58183 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
Ptp.2105.1.S1_s_at	A	A1TS	POPTR_0016s13970	POPTR_0016s13970 (11)	scaffold_16:13204688-13205805(-) (11)	NA	Q94AL9	"Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial"	AT2G38400.1	alanine:glyoxylate aminotransferase 3 	LOC_Os05g39770.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2106.1.A1_s_at	A	A1TS	POPTR_0001s32950	POPTR_0001s32950 (11)	scaffold_1:31220074-31220678(+) (11)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os02g52860.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr7g096810.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2107.1.S1_at	A	A1TS	POPTR_0015s14510	POPTR_0015s14510 (11)	scaffold_15:14068270-14068582(-) (11)	NA	P49200	40S ribosomal protein S20-1	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g14530.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2107.1.S1_x_at	A	A1TS	POPTR_0015s14510	POPTR_0015s14510 (11)	scaffold_15:14068270-14068582(-) (11)	NA	P49200	40S ribosomal protein S20-1	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g14530.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2108.1.S1_at	A	A1TS	POPTR_0019s08300	POPTR_0019s08300 (11)	scaffold_19:9785395-9785472(-) (11)	NA	P53665	"Acyl carrier protein, mitochondrial"	AT1G65290.1	mitochondrial acyl carrier protein 2 	LOC_Os03g22950.1	"acyl carrier protein, putative, expressed"	Medtr7g090000.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
Ptp.2109.1.A1_at	A	A1TS	POPTR_0003s18990	POPTR_0003s18990 (11)	scaffold_3:17854775-17855225(-) (11)	NA	Q9M612	Nascent polypeptide-associated complex subunit alpha-like protein	AT3G12390.1	"Nascent polypeptide-associated complex (NAC), alpha subunit family protein "	LOC_Os01g71230.1	"nascent polypeptide-associated complex subunit alpha-like protein 3, putative, expressed"	Medtr7g105560.1	Ubiquitin-associated; Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.211.1.A1_at	A	A1TS	POPTR_0002s19840	POPTR_0002s19840 (11)	scaffold_2:15761064-15761457(+) (11)	NA	NA	NA	AT4G02100.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os07g49000.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g132780.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
Ptp.2112.1.S1_at	A	A1TS	POPTR_0007s05200	POPTR_0007s05200 (11)	scaffold_7:3353769-3354168(+) (11)	NA	Q7T3H7	Mediator of RNA polymerase II transcription subunit 18	AT2G22370.1	unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g10050.1	expressed protein	Medtr5g047410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2115.1.S1_at	A	A1TS	POPTR_0006s07950	POPTR_0006s07950 (11)	scaffold_6:5809992-5812076(+) (11)	NA	O60925	Prefoldin subunit 1	AT2G07340.1	PREFOLDIN 1 	LOC_Os02g26440.1	"prefoldin subunit, putative, expressed"	Medtr8g042790.1	Prefoldin 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.2116.1.A1_at	A	A1TS	POPTR_0005s02660	POPTR_0005s02660 (11)	scaffold_5:1704495-1705136(+) (11)	NA	Q94F49	Probable histone H2A.5	AT5G27670.1	histone H2A 7 	LOC_Os05g02300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr7g138960.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2118.1.S1_s_at	A	A1TS	POPTR_0009s14000	POPTR_0009s14000 (11)	scaffold_9:11057235-11057679(+) (11)	NA	Q9SZN1	V-type proton ATPase subunit B2	AT4G38510.5	"ATPase, V1 complex, subunit B protein "	LOC_Os01g51380.2	"ATP synthase, putative, expressed"	Medtr7g092560.1	ATPase FliI/YscN 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.2119.1.S1_at	A	A1TS	POPTR_0010s24120	POPTR_0010s24120 (11)	scaffold_10:20492039-20493581(+) (11)	NA	O74978	Uncharacterized RNA-binding protein C1827.05c	AT5G04600.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g31810.3	"RNA recognition motif containing protein, putative, expressed"	Medtr1g137330.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.212.1.A1_a_at	A	A2TS	POPTR_0011s05800	POPTR_0011s05800 (11)//POPTR_0011s05830 (11)	scaffold_11:5820907-5821061(-) (11)//scaffold_11:5841093-5841244(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2120.1.S1_at	A	A1TS	POPTR_0005s02130	POPTR_0005s02130 (11)	scaffold_5:1395279-1395781(-) (11)	NA	Q9LD55	Eukaryotic translation initiation factor 3 subunit A	AT4G11420.1	eukaryotic translation initiation factor 3A 	LOC_Os01g03070.2	"transposon protein, putative, unclassified, expressed"	Medtr7g118360.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2121.1.S1_x_at	A	A1TS	POPTR_0005s11780	POPTR_0005s11780 (11)	scaffold_5:8568670-8568771(-) (11)	NA	Q42064	60S ribosomal protein L8-3	AT4G36130.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr7g084800.1	Elongation factor P-like protein YeiP 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2122.2.S1_a_at	A	A1TS	POPTR_0001s44430	POPTR_0001s44430 (11)	scaffold_1:44841862-44843630(-) (11)	NA	Q5ZI57	Trafficking protein particle complex subunit 3	AT5G54750.1	Transport protein particle (TRAPP) component 	LOC_Os07g44790.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr4g110910.1	"Transport protein particle (TRAPP) component, Bet3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2124.1.A1_s_at	A	A1TS	POPTR_0015s15330	POPTR_0015s15330 (11)	scaffold_15:14647056-14647466(-) (11)	NA	NA	NA	AT2G35150.1	EXORDIUM like 1 	LOC_Os07g31430.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2127.1.S1_at	A	A1TS	POPTR_0002s02310	POPTR_0002s02310 (11)	scaffold_2:1301424-1301791(-) (11)	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.2129.1.S1_at	A	A1TS	POPTR_0010s24900	POPTR_0010s24900 (10)	scaffold_10:20857819-20858399(-) (10)	NA	NA	NA	AT5G04840.1	bZIP protein 	LOC_Os02g33560.1	expressed protein	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.213.1.S1_a_at	A	A1TS	POPTR_0010s13010	POPTR_0010s13010 (11)	scaffold_10:12926115-12926822(+) (11)	NA	NA	NA	AT2G01220.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g49670.1	"cytidylyltransferase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.213.1.S1_s_at	A	A1TS	POPTR_0010s13010	POPTR_0010s13010 (10)	scaffold_10:12925044-12925662(+) (10)	NA	NA	NA	AT2G01220.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g49670.1	"cytidylyltransferase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2130.1.S1_s_at	A	A1TS	POPTR_0002s01080	POPTR_0002s01080 (11)	scaffold_2:567918-568453(-) (11)	NA	P17598	Catalase isozyme 1	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
Ptp.2131.1.S1_s_at	A	A1TS	POPTR_0019s08070	POPTR_0019s08070 (11)	scaffold_19:9443366-9443647(+) (11)	NA	NA	NA	AT3G02790.1	zinc finger (C2H2 type) family protein 	LOC_Os06g49490.1	"ZOS6-10 - C2H2 zinc finger protein, expressed"	Medtr7g089600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2132.2.A1_a_at	A	A1TS	POPTR_0009s06640	POPTR_0009s06640 (11)	scaffold_9:6377701-6381638(-) (11)	NA	P22778	"ATP synthase subunit O, mitochondrial"	AT5G13450.1	delta subunit of Mt ATP synthase 	LOC_Os06g43850.1	"ATP synthase F1, delta subunit family protein, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)""||GO:0005886|plasma membrane"
Ptp.2133.1.S1_s_at	A	A1TS	POPTR_0016s12260	POPTR_0016s12260 (11)	scaffold_16:11606762-11607050(-) (11)	NA	Q9XF88	"Chlorophyll a-b binding protein CP29.2, chloroplastic"	AT3G08940.2	light harvesting complex photosystem II 	LOC_Os07g37240.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr4g012910.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2134.2.S1_at	A	A1TS	POPTR_0010s08900	POPTR_0010s08900 (11)	scaffold_10:9700023-9700580(-) (11)	NA	Q09867	rRNA-processing protein efg1	AT1G04230.1	Protein of unknown function (DUF2361) 	LOC_Os03g58340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2135.1.A1_at	A	A1TS	POPTR_0002s24530	POPTR_0002s24530 (11)	scaffold_2:21893888-21894090(+) (11)	NA	NA	NA	AT3G07120.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g087330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2137.1.S1_at	A	A1TS	POPTR_0014s02930	POPTR_0014s02930 (11)	scaffold_14:2417232-2418153(+) (11)	NA	P97852	Peroxisomal multifunctional enzyme type 2	AT5G42890.1	sterol carrier protein 2 	LOC_Os02g52720.1	"peroxisomal multifunctional enzyme type 2, putative"	Medtr1g024360.1	Short-chain dehydrogenase/reductase SDR; Sterol-binding 	NA	NA	NA
Ptp.2138.1.S1_s_at	A	A1TS	POPTR_0003s16960	POPTR_0003s16960 (11)	scaffold_3:16457594-16458658(+) (11)	NA	NA	NA	AT1G27330.1	Ribosome associated membrane protein RAMP4 	LOC_Os11g41875.2	"membrane protein, putative, expressed"	Medtr2g030550.1	Ribosome associated membrane RAMP4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2139.1.S1_a_at	A	A1TS	POPTR_0001s38560	POPTR_0001s38560 (11)	scaffold_1:37763855-37765150(-) (11)	NA	Q9ZP06	"Malate dehydrogenase 1, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.214.1.A1_s_at	A	A1TS	POPTR_0001s47350	POPTR_0001s47350 (11)	scaffold_1:47581389-47581642(+) (11)	NA	Q1LUT1	Enhancer of mRNA-decapping protein 4	AT3G13300.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g080420.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2141.1.A1_s_at	A	A1TS	POPTR_0018s07050	POPTR_0018s07050 (9)	scaffold_18:7212164-7212529(-) (9)	NA	Q9LTR9	Glycylpeptide N-tetradecanoyltransferase 1	AT5G57020.1	myristoyl-CoA:protein N-myristoyltransferase 	LOC_Os01g51170.1	"glycylpeptide N-tetradecanoyltransferase 1, putative, expressed"	Medtr2g046620.1	Myristoyl-CoA:protein N-myristoyltransferase 	GO:0006499|N-terminal protein myristoylation	GO:0004379|glycylpeptide N-tetradecanoyltransferase activity	NA
Ptp.2142.1.S1_s_at	A	A1TS	POPTR_0001s12840	POPTR_0001s12840 (11)	scaffold_1:9961066-9961824(-) (11)	NA	Q9M2F1	40S ribosomal protein S27-2	AT3G61110.1	ribosomal protein S27 	LOC_Os04g27860.1	"40S ribosomal protein S27, putative"	Medtr2g019110.1	Ribosomal protein S27E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2145.1.A1_at	A	A1TS	POPTR_0016s14360	POPTR_0016s14360 (11)	scaffold_16:13606452-13607545(+) (11)	NA	B1XKV1	Elongation factor P	AT3G08740.1	elongation factor P (EF-P) family protein 	LOC_Os12g02380.1	"elongation factor P, putative, expressed"	Medtr7g080370.1	Elongation factor P/YeiP; Elongation factor P-like protein YeiP; ; ; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	NA
Ptp.2147.2.S1_s_at	A	A1TS	POPTR_0014s13760	POPTR_0014s13760 (11)	scaffold_14:10081012-10083070(+) (11)	NA	Q84Y95	"Monothiol glutaredoxin-S14, chloroplastic"	AT3G54900.1	CAX interacting protein 1 	LOC_Os03g63420.1	"OsGrx_S14 - glutaredoxin subgroup II, expressed"	Medtr7g089300.1	Glutaredoxin-related protein; Glutaredoxin active site 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.2148.1.S1_at	A	A1TS	POPTR_0001s11600	POPTR_0001s11600 (11)	scaffold_1:9014821-9014939(+) (11)	POPTR_0003s14870 (7)	Q9SHE8	"Photosystem I reaction center subunit III, chloroplastic"	AT1G31330.1	photosystem I subunit F 	LOC_Os03g56670.2	"photosystem I reaction center subunit III, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
Ptp.2148.1.S1_s_at	A	A1TS	POPTR_0001s11600	POPTR_0001s11600 (11)	scaffold_1:9014664-9014827(+) (11)	NA	Q9SHE8	"Photosystem I reaction center subunit III, chloroplastic"	AT1G31330.1	photosystem I subunit F 	LOC_Os03g56670.2	"photosystem I reaction center subunit III, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
Ptp.2150.1.S1_at	A	A1TS	POPTR_0006s10150	POPTR_0006s10150 (10)	scaffold_6:7538386-7538992(-) (10)	NA	NA	NA	AT3G08920.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os03g18020.1	"rhodanese-like family protein, putative, expressed"	AC235756_2.1	Rhodanese-like AC235756.1 14706-16792 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2151.1.S1_s_at	A	A1TS	POPTR_0010s21840	POPTR_0010s21840 (11)	scaffold_10:18980875-18983772(-) (11)	NA	Q9FRL8	Glutathione S-transferase DHAR2	AT1G75270.1	dehydroascorbate reductase 2 	LOC_Os05g02530.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2152.1.S1_s_at	A	A1TS	POPTR_0001s25990	POPTR_0001s25990 (11)	scaffold_1:25092251-25092610(+) (11)	NA	Q9STZ2	SelT-like protein	AT3G47300.1	SELT-like protein precursor 	LOC_Os01g61580.1	"selT-like protein precursor, putative, expressed"	Medtr4g013030.1	SelT/selW/selH selenoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2153.1.S1_at	A	A1TS	POPTR_0001s36650	POPTR_0001s36650 (10)	scaffold_1:35333775-35334220(+) (10)	NA	Q9FLP0	65-kDa microtubule-associated protein 1	AT5G55230.1	microtubule-associated proteins 65-1 	LOC_Os06g20370.1	"microtubule associated protein, putative, expressed"	Medtr5g101260.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2155.1.S1_s_at	A	A1TS	POPTR_0001s39950	POPTR_0001s39950 (11)	scaffold_1:39234419-39234719(+) (11)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.2156.1.S1_s_at	A	A1TS	POPTR_0002s13970	POPTR_0002s13970 (11)	scaffold_2:10357224-10357994(-) (11)	NA	P39207	Nucleoside diphosphate kinase 1	AT4G09320.1	Nucleoside diphosphate kinase family protein 	LOC_Os10g41410.2	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
Ptp.2158.1.S1_at	A	A1TS	POPTR_0006s25180	POPTR_0006s25180 (11)	scaffold_6:23607066-23608586(+) (11)	NA	Q8GSL5	Profilin	AT4G29340.1	profilin 4 	LOC_Os10g17680.1	"profilin domain containing protein, expressed"	Medtr4g160100.1	Plant profilin 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	GO:0015629|actin cytoskeleton
Ptp.2159.1.S1_at	A	A1TS	POPTR_0015s07340	POPTR_0015s07340 (11)	scaffold_15:8515148-8515707(+) (11)	NA	P27521	"Chlorophyll a-b binding protein 4, chloroplastic"	AT3G47470.1	light-harvesting chlorophyll-protein complex I subunit A4 	LOC_Os08g33820.1	"chlorophyll A-B binding protein, putative, expressed"	AC233662_10.1	Chlorophyll A-B binding protein AC233662.1 39478-42517 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2159.1.S1_s_at	A	A1TS	POPTR_0015s07340	POPTR_0015s07340 (11)	scaffold_15:8515092-8515504(+) (11)	NA	P27521	"Chlorophyll a-b binding protein 4, chloroplastic"	AT3G47470.1	light-harvesting chlorophyll-protein complex I subunit A4 	LOC_Os08g33820.1	"chlorophyll A-B binding protein, putative, expressed"	AC233662_10.1	Chlorophyll A-B binding protein AC233662.1 39478-42517 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.216.1.A1_at	A	A1TS	POPTR_0006s23730	POPTR_0006s23730 (11)	scaffold_6:22441209-22441324(-) (11)	NA	NA	NA	AT1G02180.1	ferredoxin-related 	LOC_Os08g35710.1	expressed protein	Medtr3g139260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2160.1.A1_at	A	A1TS	POPTR_0001s37470	POPTR_0001s37470 (11)	scaffold_1:36451757-36452346(+) (11)	NA	NA	NA	AT5G55610.1	"unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os12g31490.1	expressed protein	Medtr4g129710.1	"receptor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2161.1.S1_s_at	A	A1TS	POPTR_0001s39590	POPTR_0001s39590 (11)	scaffold_1:38812905-38813268(+) (11)	NA	Q54XK2	Protein transport protein Sec61 subunit alpha	AT2G34250.2	SecY protein transport family protein 	LOC_Os03g11440.1	"protein transport protein Sec61 subunit alpha, putative, expressed"	Medtr8g092670.1	SecY protein; ABC transporter related 	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
Ptp.2162.1.S1_at	A	A1TS	POPTR_0001s24910	POPTR_0001s24910 (11)	scaffold_1:24179477-24180297(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2162.1.S1_s_at	A	A1TS	POPTR_0001s24910	POPTR_0001s24910 (11)	scaffold_1:24179635-24179962(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2162.2.S1_s_at	A	A1TS	POPTR_0001s24910	POPTR_0001s24910 (11)	scaffold_1:24180392-24181155(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2163.1.S1_at	A	A2TS	POPTR_0011s14540	POPTR_0011s14540 (11)//POPTR_0011s14550 (11)	scaffold_11:16914517-16914863(+) (11)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.2163.1.S1_x_at	A	A2TS	POPTR_0011s14540	POPTR_0011s14540 (11)//POPTR_0011s14550 (11)	scaffold_11:16914517-16914863(+) (11)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.2164.1.S1_s_at	A	A1TS	POPTR_0018s02470	POPTR_0018s02470 (11)	scaffold_18:2270980-2271426(+) (11)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os02g08440.1	"OsWRKY71 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g138240.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.2165.1.S1_at	A	A1TS	POPTR_0002s19010	POPTR_0002s19010 (11)	scaffold_2:14921745-14922206(+) (11)	NA	P07369	"Chlorophyll a-b binding protein 3C, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os09g17740.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2166.1.S1_s_at	A	A1TS	POPTR_0001s12960	POPTR_0001s12960 (11)	scaffold_1:10051054-10051490(-) (11)	NA	P51132	"Cytochrome b-c1 complex subunit Rieske-2, mitochondrial"	AT5G13430.1	Ubiquinol-cytochrome C reductase iron-sulfur subunit 	LOC_Os02g32120.1	"cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed"	Medtr7g097200.1	Ubiquinol cytochrome reductase transmembrane region; Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0008121|ubiquinol-cytochrome-c reductase activity||GO:0009055|electron carrier activity||GO:0051537|""2 iron, 2 sulfur cluster binding"""	NA
Ptp.2168.1.S1_at	A	A1TS	POPTR_0019s04930	POPTR_0019s04930 (11)	scaffold_19:5139434-5141436(-) (11)	NA	Q02921	Early nodulin-93	AT5G25940.1	early nodulin-related 	LOC_Os02g13380.1	"early nodulin 93 ENOD93 protein, putative, expressed"	Medtr1g008390.1	Early nodulin 93 ENOD93 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2169.1.S1_a_at	A	A1TS	POPTR_0010s03010	POPTR_0010s03010 (9)	scaffold_10:3519909-3519953(-) (9)	NA	O22506	"Glutamine synthetase, chloroplastic"	AT5G35630.3	glutamine synthetase 2 	LOC_Os04g56400.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr2g026390.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2169.1.S1_s_at	A	A1TS	POPTR_0010s03010	POPTR_0010s03010 (11)	scaffold_10:3519952-3520195(-) (11)	NA	O22506	"Glutamine synthetase, chloroplastic"	AT5G35630.3	glutamine synthetase 2 	LOC_Os04g56400.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr2g026390.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2169.2.S1_s_at	A	A2TS	POPTR_0008s20460	POPTR_0010s03010 (11)//POPTR_0008s20460 (11)	scaffold_10:3520199-3520244(-) (11)//scaffold_8:14204054-14204099(-) (11)	NA	P08281	"Glutamine synthetase leaf isozyme, chloroplastic"	AT5G35630.3	glutamine synthetase 2 	LOC_Os04g56400.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr2g026390.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2169.3.S1_at	A	A1TA	POPTR_0013s02220	POPTR_0013s02220 (11)	scaffold_13:1328871-1330373(-) (11)	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.2	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2170.1.A1_at	A	A1TS	POPTR_0014s15660	POPTR_0014s15660 (9)	scaffold_14:11676562-11676696(+) (9)	NA	Q8VYE5	"Glucan endo-1,3-beta-glucosidase 12"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2171.1.S1_a_at	A	A1TS	POPTR_0008s05740	POPTR_0008s05740 (11)	scaffold_8:3332730-3333466(+) (11)	NA	Q9C7B1	Telomere repeat-binding protein 3	AT3G12560.1	TRF-like 9 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr5g087440.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2172.1.S1_at	A	A1TS	POPTR_0002s10870	POPTR_0002s10870 (11)	scaffold_2:7890765-7890887(+) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
Ptp.2172.2.S1_a_at	A	A1TS	POPTR_0002s10870	POPTR_0002s10870 (10)	scaffold_2:7890227-7890266(+) (10)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
Ptp.2172.2.S1_s_at	A	A1TS	POPTR_0002s10870	POPTR_0002s10870 (11)	scaffold_2:7890151-7890503(+) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
Ptp.2173.2.S1_a_at	A	A1TS	POPTR_0010s15250	POPTR_0010s15250 (11)	scaffold_10:14573963-14574020(+) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.2176.1.S1_at	A	A1TS	POPTR_0002s02220	POPTR_0002s02220 (11)	scaffold_2:1232676-1233048(-) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022060.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.2177.1.S1_at	A	A1TS	POPTR_0014s10200	POPTR_0014s10200 (11)	scaffold_14:7654553-7656619(+) (11)	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT2G46820.2	photosystem I P subunit 	LOC_Os07g28610.2	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2177.1.S1_x_at	A	A1TS	POPTR_0014s10200	POPTR_0014s10200 (11)	scaffold_14:7654171-7656619(+) (11)	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT2G46820.2	photosystem I P subunit 	LOC_Os07g28610.2	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2178.1.S1_at	A	A1TS	POPTR_0006s26650	POPTR_0006s26650 (11)	scaffold_6:24806696-24807243(-) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2178.1.S1_x_at	A	A1TS	POPTR_0006s26650	POPTR_0006s26650 (11)	scaffold_6:24806675-24807717(-) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.218.1.A1_at	A	A1TS	POPTR_0006s06370	POPTR_0006s06370 (11)	scaffold_6:4549620-4550159(+) (11)	NA	Q5ZHV2	"N-alpha-acetyltransferase 35, NatC auxiliary subunit"	AT2G11000.1	MAK10 homologue 	LOC_Os02g55950.1	"ATMAK10, putative, expressed"	Medtr8g121510.1	"Protein MAK10 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2182.1.S1_at	A	A1TS	POPTR_0012s02260	POPTR_0012s02260 (10)	scaffold_12:1883597-1885360(-) (10)	NA	B6ISY6	ATP-dependent Clp protease ATP-binding subunit ClpX	AT5G53350.1	CLP protease regulatory subunit X 	LOC_Os02g35630.1	"AAA family ATPase, putative, expressed"	Medtr3g123850.1	"ClpX, ATPase regulatory subunit "	NA	GO:0005524|ATP binding	NA
Ptp.2183.1.S1_s_at	A	A1TS	POPTR_0010s02340	POPTR_0010s02340 (11)	scaffold_10:2691452-2692478(+) (11)	NA	Q68W88	50S ribosomal protein L14	AT5G46160.2	Ribosomal protein L14p/L23e family protein 	LOC_Os12g42180.1	"ribosomal protein, putative, expressed"	Medtr5g104080.1	"Ribosomal protein L14, bacterial and organelle form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2184.1.S1_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (11)	scaffold_14:13872970-13874117(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
Ptp.2184.2.S1_s_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (11)	scaffold_14:13874267-13874445(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
Ptp.2185.1.S1_s_at	A	A1TS	POPTR_0005s01470	POPTR_0005s01470 (11)	scaffold_5:958558-958876(-) (11)	NA	NA	NA	AT1G09310.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2186.1.S1_a_at	A	A1TS	POPTR_0018s11600	POPTR_0018s11600 (11)	scaffold_18:12264202-12264279(-) (11)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
Ptp.2186.2.S1_at	A	A1MS	POPTR_0018s11600	POPTR_0018s11600 (10)	scaffold_18:12264157-12264516(-) (10)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
Ptp.2186.3.S1_at	A	A1MS	POPTR_0018s11600	POPTR_0018s11600 (11)	scaffold_18:12265032-12265250(-) (11)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
Ptp.2188.1.S1_a_at	A	A1TS	POPTR_0001s06150	POPTR_0001s06150 (11)	scaffold_1:4757584-4758142(-) (11)	NA	NA	NA	AT2G38800.1	Plant calmodulin-binding protein-related 	LOC_Os05g31690.1	expressed protein	Medtr3g021660.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2188.1.S1_s_at	A	A1TS	POPTR_0001s06150	POPTR_0001s06150 (11)	scaffold_1:4757648-4757885(-) (11)	NA	NA	NA	AT2G38800.1	Plant calmodulin-binding protein-related 	LOC_Os05g31690.1	expressed protein	Medtr3g021660.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2189.1.A1_s_at	A	A1TS	POPTR_0001s10710	POPTR_0001s10710 (11)	scaffold_1:8335499-8336435(+) (11)	NA	Q39828	Dynamin-related protein 5A	AT5G42080.1	dynamin-like protein 	LOC_Os05g48240.1	"dynamin family protein, putative, expressed"	Medtr5g009190.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.219.1.A1_at	A	A1TS	POPTR_0005s06140	POPTR_0005s06140 (11)	scaffold_5:4045536-4046854(+) (11)	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.219.2.S1_s_at	A	A1TS	POPTR_0005s06140	POPTR_0005s06140 (11)	scaffold_5:4044081-4044569(+) (11)	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2191.1.S1_at	A	A1TS	POPTR_0014s15780	POPTR_0014s15780 (9)	scaffold_14:11847345-11848985(+) (9)	NA	NA	NA	AT1G04985.1	unknown protein; Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g57330.1	expressed protein	Medtr5g092340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2193.1.A1_s_at	A	A2TS	POPTR_0005s24200	POPTR_0005s24200 (11)//POPTR_0005s24220 (9)	scaffold_5:22813564-22813793(+) (11)//scaffold_5:22837557-22837671(+) (9)	NA	O81117	Cytochrome P450 94A1	AT5G63450.1	"cytochrome P450, family 94, subfamily B, polypeptide 1 "	LOC_Os03g12260.1	"cytochrome P450 protein, putative, expressed"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2196.1.S1_at	A	A1TS	POPTR_0003s21940	POPTR_0003s21940 (10)	scaffold_3:19875603-19876061(+) (10)//scaffold_3:19925682-19926140(+) (10)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12560.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011780.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2197.1.A1_at	A	A2TS	POPTR_0010s01330	POPTR_0010s02110 (9)//POPTR_0010s01330 (9)	scaffold_10:1331536-1332435(+) (9)//scaffold_10:2429868-2430767(-) (9)	NA	P19515	Lipase	AT5G18640.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g30900.1	"lipase precursor, putative, expressed"	Medtr2g025130.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.2198.1.A1_at	A	A1TS	POPTR_0002s05670	POPTR_0002s05670 (11)	scaffold_2:3727362-3732648(-) (11)	NA	Q28D01	WD repeat-containing protein 26	AT5G08560.2	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2199.3.S1_at	A	A1MS	POPTR_0012s05260	POPTR_0012s05260 (11)	scaffold_12:4851177-4851732(+) (11)	NA	Q6YYA3	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT3G18390.1	CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os05g47850.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr6g028390.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
Ptp.22.1.S1_s_at	A	A1TS	POPTR_0012s14720	POPTR_0012s14720 (11)	scaffold_12:14503805-14506898(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.22.2.S1_s_at	A	A1TS	POPTR_0012s14720	POPTR_0012s14720 (11)	scaffold_12:14507388-14507602(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.220.1.A1_at	A	A1TS	POPTR_0006s11510	POPTR_0006s11510 (9)	scaffold_6:8720422-8720656(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2200.1.A1_at	A	A1TS	POPTR_0002s25170	POPTR_0002s25170 (11)	scaffold_2:22353846-22353951(+) (11)	NA	NA	NA	AT4G27990.1	YGGT family protein 	LOC_Os07g08770.1	"YGGT family protein, putative, expressed"	Medtr3g139240.1	hypothetical protein 	NA	NA	GO:0016020|membrane
Ptp.2200.1.A1_s_at	A	A1TS	POPTR_0002s25170	POPTR_0002s25170 (11)	scaffold_2:22353474-22353657(+) (11)	NA	NA	NA	AT4G27990.1	YGGT family protein 	LOC_Os07g08770.1	"YGGT family protein, putative, expressed"	Medtr3g139240.1	hypothetical protein 	NA	NA	GO:0016020|membrane
Ptp.2201.1.S1_at	A	A1TS	POPTR_0003s06770	POPTR_0003s06770 (11)	scaffold_3:8305672-8306353(+) (11)	NA	P05050	Alpha-ketoglutarate-dependent dioxygenase AlkB	AT3G14160.1	2-oxoglutarate-dependent dioxygenase family protein 	LOC_Os03g60190.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr4g031500.1	"Alpha-ketoglutarate-dependent dioxygenase alkB, related "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.2202.1.A1_at	A	A1TS	POPTR_0012s02560	POPTR_0012s02560 (9)	scaffold_12:2106402-2106884(+) (9)	NA	O95714	E3 ubiquitin-protein ligase HERC2	AT3G26100.2	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os12g18650.4	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr3g102750.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2203.1.S1_at	A	A1TS	POPTR_0002s03140	POPTR_0002s03140 (10)	scaffold_2:1946888-1946991(+) (10)	NA	Q43636	Thioredoxin H-type	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr5g021080.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2204.1.S1_at	A	A1TS	POPTR_0004s06580	POPTR_0004s06580 (10)	scaffold_4:5287597-5288515(-) (10)	NA	Q803H0	UPF0415 protein C7orf25 homolog	AT1G73380.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733); Has 162 Blast hits to 160 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os10g34810.1	expressed protein	Medtr6g083960.1	Protein of unknown function DUF1308 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2206.2.A1_a_at	A	A1TS	POPTR_0005s07360	POPTR_0005s07360 (11)	scaffold_5:5030734-5030936(+) (11)	NA	Q9NS86	LanC-like protein 2	AT5G65280.1	GCR2-like 1 	LOC_Os10g35480.1	"lanC-like protein 2, putative, expressed"	Medtr3g102050.1	Lanthionine synthetase C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2207.1.S1_at	A	A1TS	POPTR_0005s21320	POPTR_0005s21320 (9)	scaffold_5:20430767-20432660(-) (9)	NA	P48504	Cytochrome b-c1 complex subunit 6	AT1G15120.1	Ubiquinol-cytochrome C reductase hinge protein 	LOC_Os11g06340.1	"ubiquinol-cytochrome C reductase hinge protein, putative, expressed"	Medtr2g008190.1	Ubiquinol-cytochrome C reductase hinge protein 	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
Ptp.2208.1.S1_s_at	A	A1TS	POPTR_0001s25620	POPTR_0001s25620 (11)	scaffold_1:24695227-24695637(+) (11)	NA	Q9FIM2	"ATP-dependent zinc metalloprotease FTSH 9, chloroplastic"	AT5G58870.1	FTSH protease 9 	LOC_Os02g43350.1	"OsFtsH7  FtsH protease, homologue of AtFtsH7, expressed"	Medtr5g078300.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.221.2.A1_s_at	A	A1TS	POPTR_0017s13100	POPTR_0017s13100 (10)	scaffold_17:13268483-13269456(+) (10)	NA	Q54KZ8	Eukaryotic translation initiation factor 3 subunit M	AT5G15610.1	Proteasome component (PCI) domain protein 	LOC_Os04g01290.1	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2210.1.A1_s_at	A	A1TS	POPTR_0001s30010	POPTR_0001s30010 (11)	scaffold_1:28594637-28594967(+) (11)	NA	NA	NA	AT2G14680.3	myosin heavy chain-related 	LOC_Os03g31730.1	expressed protein	Medtr5g005400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2211.1.S1_at	A	A1TS	POPTR_0001s13630	POPTR_0001s13630 (9)	scaffold_1:10697461-10697836(+) (9)	NA	Q6YZE8	Squamosa promoter-binding-like protein 16	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.2212.1.A1_at	A	A1TS	POPTR_0006s27840	POPTR_0006s27840 (11)	scaffold_6:25695611-25695912(-) (11)	NA	Q9SKZ2	Probable CCR4-associated factor 1 homolog 7	AT2G32070.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
Ptp.2213.1.S1_at	A	A1TS	POPTR_0009s01900	POPTR_0009s01900 (10)	scaffold_9:2377972-2379100(+) (10)	NA	Q6MD85	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	AT5G60600.3	4-hydroxy-3-methylbut-2-enyl diphosphate synthase 	LOC_Os02g39160.1	"hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed"	Medtr2g110470.1	IspG protein; Dihydropteroate synthase-like 	GO:0055114|oxidation reduction||GO:0016114|terpenoid biosynthetic process	GO:0046429|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	NA
Ptp.2215.1.S1_s_at	A	A1MS	POPTR_0018s09490	POPTR_0018s09490 (10)	scaffold_18:10376326-10376490(+) (11)	NA	Q9SP35	Mitochondrial import inner membrane translocase subunit Tim17	AT2G37410.2	translocase inner membrane subunit 17-2 	LOC_Os07g41330.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.2218.1.S1_s_at	A	A1TS	POPTR_0001s00430	POPTR_0001s00430 (11)	scaffold_1:329375-332732(-) (11)	NA	NA	NA	AT5G47570.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g40410.1	expressed protein	Medtr8g105980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2219.1.S1_at	A	A1TS	POPTR_0004s03160	POPTR_0004s03160 (9)	scaffold_4:2129193-2129749(-) (11)	NA	Q41932	"Oxygen-evolving enhancer protein 3-2, chloroplastic"	AT4G05180.1	photosystem II subunit Q-2 	LOC_Os07g36080.1	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.2219.2.S1_a_at	A	A1TS	POPTR_0004s03160	POPTR_0004s03160 (11)	scaffold_4:2129817-2130548(-) (11)	NA	Q41932	"Oxygen-evolving enhancer protein 3-2, chloroplastic"	AT4G05180.1	photosystem II subunit Q-2 	LOC_Os07g36080.1	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.222.2.A1_x_at	A	A1TS	POPTR_0017s06450	POPTR_0017s06450 (10)	scaffold_17:4942587-4942851(-) (10)	NA	P0CG84	Polyubiquitin (Fragment)	AT4G05320.6	polyubiquitin 10 	LOC_Os05g42424.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.2	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2221.1.A1_at	A	A1TS	POPTR_0003s07130	POPTR_0003s07130 (11)	scaffold_3:8719956-8720441(-) (11)	NA	Q9C8M9	Protein STRUBBELIG-RECEPTOR FAMILY 6	AT1G53730.1	STRUBBELIG-receptor family 6 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2223.1.S1_at	A	A1TS	POPTR_0014s16030	POPTR_0014s16030 (10)	scaffold_14:12101714-12102195(+) (10)	NA	Q0I902	Threonyl-tRNA synthetase	AT2G04842.1	"threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative "	LOC_Os02g33500.1	"threonyl-tRNA synthetase, putative, expressed"	Medtr3g106090.1	"Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.2225.2.S1_at	A	A1MS	POPTR_0002s05660	POPTR_0002s05660 (9)	scaffold_2:3725027-3725359(+) (9)	NA	Q9SLQ8	"Oxygen-evolving enhancer protein 2, chloroplastic"	AT1G06680.1	photosystem II subunit P-1 	LOC_Os07g04840.1	"PsbP, putative, expressed"	Medtr5g097510.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.2226.1.S1_at	A	A1TS	POPTR_0003s13460	POPTR_0003s13460 (9)	scaffold_3:13837773-13838014(-) (9)	NA	P13240	Disease resistance response protein 206	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44250.1	"dirigent, putative, expressed"	Medtr8g137520.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2227.1.A1_at	A	A1TS	POPTR_0010s12030	POPTR_0010s12030 (11)	scaffold_10:12139633-12139944(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2229.1.S1_at	A	A1TS	POPTR_0004s16110	POPTR_0004s16110 (11)	scaffold_4:16549359-16550910(-) (11)	NA	P93398	Guanine nucleotide-binding protein subunit beta-2	AT4G34460.1	GTP binding protein beta 1 	LOC_Os03g46650.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g159480.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2233.1.S1_at	A	A1TS	POPTR_0012s06890	POPTR_0012s06890 (10)	scaffold_12:7401488-7402024(-) (10)	NA	NA	NA	AT3G29270.2	RING/U-box superfamily protein 	LOC_Os03g31320.2	"RING zinc finger protein-like, putative, expressed"	Medtr6g013870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2234.1.S1_s_at	A	A1TS	POPTR_0012s02170	POPTR_0012s02170 (11)	scaffold_12:1816191-1816656(+) (11)	NA	Q9M3B0	Probable pectinesterase/pectinesterase inhibitor 34	AT3G49220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g13320.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.2235.2.A1_a_at	A	A1TS	POPTR_0005s28110	POPTR_0005s28110 (11)	scaffold_5:25477953-25478658(-) (11)	NA	Q9SRE6	Calcium-binding protein CML38	AT1G76650.3	calmodulin-like 38 	LOC_Os01g72530.1	"OsCML31 - Calmodulin-related calcium sensor protein, expressed"	Medtr6g025320.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2236.1.A1_s_at	A	A1TS	POPTR_0006s04470	POPTR_0006s04470 (9)	scaffold_6:3050386-3051359(+) (11)	NA	Q96CS2	HAUS augmin-like complex subunit 1	AT2G41350.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21980.1); Has 188 Blast hits to 188 proteins in 66 species: Archae - 0; Bacteria - 12; Metazoa - 90; Fungi - 15; Plants - 54; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). 	LOC_Os08g14220.1	expressed protein	Medtr3g111390.1	"Helix-turn-helix, AraC type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2238.1.S1_at	A	A1TS	POPTR_0007s13040	POPTR_0007s13040 (11)	scaffold_7:13219986-13220120(-) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT2G18280.2	tubby like protein 2 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2238.1.S1_s_at	A	A1TS	POPTR_0007s13040	POPTR_0007s13040 (11)	scaffold_7:13219647-13219940(-) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT2G18280.2	tubby like protein 2 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2239.1.S1_s_at	A	A1TS	POPTR_0001s14360	POPTR_0001s14360 (11)	scaffold_1:11285842-11286066(+) (11)	NA	Q8R1S0	Ubiquinone biosynthesis monooxygenase COQ6	AT3G24200.2	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g62260.1	"FAD binding domain containing protein, expressed"	Medtr2g071190.2	Aromatic-ring hydroxylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.224.1.A1_at	A	A1TS	POPTR_0018s06470	POPTR_0018s06470 (10)	scaffold_18:6377230-6379015(-) (10)	NA	Q9SR77	"Heme-binding-like protein At3g10130, chloroplastic"	AT5G20140.2	SOUL heme-binding family protein 	LOC_Os06g39690.1	"SOUL heme-binding protein, putative, expressed"	Medtr2g058890.1	SOUL heme-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2240.1.S1_at	A	A1TS	POPTR_0007s00930	POPTR_0007s00930 (9)	scaffold_7:494547-496645(-) (9)	NA	Q40532	Mitogen-activated protein kinase homolog NTF4	AT2G43790.1	MAP kinase 6 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g128260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2241.1.S1_at	A	A1TA	POPTR_0004s21930	POPTR_0004s21930 (11)	scaffold_4:20881823-20882211(-) (11)	NA	Q9SZL4	RING-H2 finger protein ATL18	AT4G38140.1	RING/U-box superfamily protein 	LOC_Os07g23970.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g010210.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2242.1.S1_a_at	A	A1TS	POPTR_0001s40700	POPTR_0001s40700 (11)	scaffold_1:40294473-40294718(+) (11)	NA	Q9ASV6	"30S ribosomal protein S20, chloroplastic"	AT3G15190.1	"chloroplast 30S ribosomal protein S20, putative "	LOC_Os01g48690.1	"ribosomal protein rpS20, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2244.1.A1_s_at	A	A1TS	POPTR_0007s04020	POPTR_0007s04020 (11)	scaffold_7:2405729-2406255(+) (11)	NA	Q9LXD9	Probable pectinesterase/pectinesterase inhibitor 51	AT5G09760.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g65790.1	"pectinesterase, putative, expressed"	Medtr4g142540.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.2245.2.A1_at	A	A1TS	POPTR_0001s41290	POPTR_0001s41290 (11)	scaffold_1:40906716-40906956(-) (11)	NA	Q99LH1	Nucleolar GTP-binding protein 2	AT1G52980.1	GTP-binding family protein 	LOC_Os03g22890.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2246.1.A1_at	A	A1TS	POPTR_0002s18020	POPTR_0002s18020 (11)	scaffold_2:13911882-13913340(+) (11)	NA	Q1XDM0	Pyruvate dehydrogenase E1 component subunit alpha	AT1G01090.1	pyruvate dehydrogenase E1 alpha 	LOC_Os04g02900.1	"dehydrogenase E1 component domain containing protein, expressed"	Medtr8g074090.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
Ptp.2248.1.S1_at	A	A1TS	POPTR_0005s26610	POPTR_0005s26610 (11)	scaffold_5:24555985-24556476(+) (11)	NA	Q0JIL1	Probable nucleoredoxin 2	AT1G60420.1	DC1 domain-containing protein 	LOC_Os01g58194.1	"protein disulfide isomerase, putative, expressed"	Medtr3g157120.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2251.1.S1_at	A	A1TS	POPTR_0009s10890	POPTR_0009s10890 (10)	scaffold_9:9218472-9218802(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2252.1.A1_at	A	A1TS	POPTR_0001s39210	POPTR_0001s39210 (11)	scaffold_1:38415990-38416519(+) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G78570.1	rhamnose biosynthesis 1 	LOC_Os03g17000.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2253.1.S1_at	A	A1TS	POPTR_0003s11510	POPTR_0003s11510 (11)	scaffold_3:12282764-12283043(+) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.2254.1.S1_s_at	A	A1TS	POPTR_0005s24130	POPTR_0005s24130 (11)	scaffold_5:22768202-22768265(+) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.2255.1.S1_at	A	A1TS	POPTR_0015s08970	POPTR_0015s08970 (9)	scaffold_15:10316447-10317403(+) (9)	NA	NA	NA	AT5G63000.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os01g16510.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2256.1.S1_s_at	A	A1TS	POPTR_0001s23710	POPTR_0001s23710 (10)	scaffold_1:23097587-23098005(-) (11)	NA	Q9AUE0	Callose synthase 1	AT1G05570.1	callose synthase 1 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.2257.1.S1_x_at	A	A1TS	POPTR_0009s03610	POPTR_0009s03610 (11)	scaffold_9:4235666-4236077(+) (11)	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
Ptp.2257.3.S1_x_at	A	A1TS	POPTR_0009s03610	POPTR_0009s03610 (11)	scaffold_9:4235666-4236174(+) (11)	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
Ptp.2258.1.S1_at	A	A1TS	POPTR_0001s30840	POPTR_0001s30840 (10)	scaffold_1:29281219-29281360(+) (10)	NA	NA	NA	AT4G34190.1	stress enhanced protein 1 	LOC_Os10g25570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2258.2.S1_at	A	A1MS	POPTR_0001s30840	POPTR_0001s30840 (9)	scaffold_1:29280197-29280737(+) (9)	NA	NA	NA	AT4G34190.1	stress enhanced protein 1 	LOC_Os10g25570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2259.1.S1_at	A	A1TS	POPTR_0006s08580	POPTR_0006s08580 (10)	scaffold_6:6263048-6264646(-) (10)	NA	O13731	E3 ubiquitin-protein ligase ubr11	AT5G02310.1	proteolysis 6 	LOC_Os01g05500.2	"zinc finger protein, putative, expressed"	Medtr7g068520.1	"Zinc finger, RING-type; Zinc finger, N-recognin; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.226.1.S1_at	A	A1TS	POPTR_0014s05750	POPTR_0014s05750 (11)	scaffold_14:4303339-4304297(+) (11)	NA	P28769	T-complex protein 1 subunit alpha	AT3G20050.1	T-complex protein 1 alpha subunit 	LOC_Os04g46620.1	"T-complex protein, putative, expressed"	Medtr4g136760.1	"T-complex protein 1, alpha subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.2260.1.S1_at	A	A1TS	POPTR_0017s06870	POPTR_0017s06870 (11)	scaffold_17:5229160-5229386(-) (11)	NA	O23372	Probable histone-lysine N-methyltransferase ATXR3	AT4G15180.1	SET domain protein 2 	LOC_Os08g08210.1	"SET domain containing protein, expressed"	Medtr2g103390.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2263.1.S1_s_at	A	A1TS	POPTR_0001s18210	POPTR_0001s18210 (11)	scaffold_1:15288290-15288453(+) (11)	NA	NA	NA	AT1G15270.1	Translation machinery associated TMA7 	LOC_Os06g47230.1	"coiled-coil domain-containing protein 72, putative, expressed"	Medtr4g009030.1	"Coiled-coil domain-containing protein 72 homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2266.1.A1_s_at	A	A1TS	POPTR_0009s06200	POPTR_0009s06200 (11)	scaffold_9:6050945-6051120(+) (11)	NA	Q9LY66	"50S ribosomal protein L1, chloroplastic"	AT3G63490.1	Ribosomal protein L1p/L10e family 	LOC_Os05g32220.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr4g110000.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.2267.1.A1_at	A	A1TS	POPTR_0001s08770	POPTR_0001s08770 (11)	scaffold_1:6699306-6699506(-) (11)	NA	P46280	"Elongation factor Tu, chloroplastic"	AT4G20360.1	RAB GTPase homolog E1B 	LOC_Os02g38210.1	"elongation factor Tu, putative, expressed"	Medtr3g115100.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.2268.1.S1_s_at	A	A1TS	POPTR_0010s11970	POPTR_0010s11970 (10)	scaffold_10:12087366-12087720(-) (10)	NA	Q9ZSQ4	"Phosphoglucomutase, cytoplasmic"	AT1G70730.3	Phosphoglucomutase/phosphomannomutase family protein 	LOC_Os03g50480.1	"phosphoglucomutase, putative, expressed"	Medtr4g157910.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
Ptp.2269.1.S1_s_at	A	A1TS	POPTR_0017s11410	POPTR_0017s11410 (11)	scaffold_17:11180527-11180850(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os09g19710.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g112900.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.227.1.A1_at	A	A1TS	POPTR_0002s08340	POPTR_0002s08340 (11)	scaffold_2:5818064-5818569(+) (11)	NA	Q94420	Protein maternal effect lethal 26	AT1G21780.2	BTB/POZ domain-containing protein 	LOC_Os08g01320.2	"C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed"	Medtr3g100540.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
Ptp.2270.1.A1_at	A	A1TS	POPTR_0003s11440	POPTR_0003s11440 (10)	scaffold_3:12245314-12245858(+) (10)	NA	Q5FVD6	Maspardin	AT4G12230.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g08840.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g106940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2271.1.S1_s_at	A	A1TS	POPTR_0001s39510	POPTR_0001s39510 (11)	scaffold_1:38704033-38707849(-) (11)	NA	NA	NA	AT3G14830.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g52920.1	expressed protein	Medtr2g091120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2274.1.S1_s_at	A	A1TS	POPTR_0002s19780	POPTR_0002s19780 (10)	scaffold_2:15703009-15703659(+) (10)	NA	Q8LGG8	Universal stress protein A-like protein	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g106920.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.2275.2.S1_s_at	A	A1TS	POPTR_0010s19730	POPTR_0010s19730 (11)	scaffold_10:17567973-17570866(+) (11)	NA	P59234	Protein yippee-like	AT2G40110.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g093410.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2275.3.S1_at	A	A1TS	POPTR_0010s19730	POPTR_0010s19730 (11)	scaffold_10:17570935-17571085(+) (11)	NA	P59234	Protein yippee-like	AT2G40110.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g093410.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2278.1.A1_at	A	A1TS	POPTR_0006s14140	POPTR_0006s14140 (11)	scaffold_6:11450006-11450353(+) (11)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.228.2.A1_s_at	A	A1TS	POPTR_0014s18740	POPTR_0014s18740 (10)	scaffold_14:16110061-16110316(-) (10)	NA	Q86UA1	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2280.1.A1_s_at	A	A1TS	POPTR_0009s02050	POPTR_0009s02050 (11)	scaffold_9:2682169-2682387(+) (11)	NA	NA	NA	AT3G45600.1	tetraspanin3 	LOC_Os05g03140.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.2282.1.S1_a_at	A	A1TS	POPTR_0003s15370	POPTR_0003s15370 (11)	scaffold_3:15165268-15166325(-) (11)	NA	Q5VT66	"MOSC domain-containing protein 1, mitochondrial"	AT1G30910.1	Molybdenum cofactor sulfurase family protein 	LOC_Os09g38772.1	"MOSC domain-containing protein, mitochondrial precursor, putative, expressed"	Medtr4g090100.1	"MOSC; MOSC, N-terminal beta barrel; Pyruvate kinase, beta-barrel-like "	NA	GO:0003824|catalytic activity||GO:0030151|molybdenum ion binding||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2282.3.A1_at	A	A1TS	POPTR_0003s15370	POPTR_0003s15370 (11)	scaffold_3:15164849-15165000(-) (11)	NA	Q5VT66	"MOSC domain-containing protein 1, mitochondrial"	AT1G30910.1	Molybdenum cofactor sulfurase family protein 	LOC_Os09g38772.1	"MOSC domain-containing protein, mitochondrial precursor, putative, expressed"	Medtr4g090100.1	"MOSC; MOSC, N-terminal beta barrel; Pyruvate kinase, beta-barrel-like "	NA	GO:0003824|catalytic activity||GO:0030151|molybdenum ion binding||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2283.1.S1_at	A	A1TS	POPTR_0002s17770	POPTR_0002s17770 (10)	scaffold_2:13618632-13619104(-) (10)	NA	NA	NA	AT5G65960.1	GTP binding 	LOC_Os04g49530.1	expressed protein	Medtr8g087580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2286.1.S1_at	A	A1TS	POPTR_0009s03310	POPTR_0009s03310 (10)	scaffold_9:3981259-3981643(+) (10)	NA	Q1S9I9	Probable histone H2B.1	AT3G45980.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.2288.1.A1_at	A	A1TS	POPTR_0004s05770	POPTR_0004s05770 (10)	scaffold_4:4533222-4533695(+) (10)	NA	Q39011	Shaggy-related protein kinase eta	AT4G18710.1	Protein kinase superfamily protein 	LOC_Os05g11730.1	"CGMC_GSK.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g097890.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2289.1.S1_at	A	A1TS	POPTR_0012s14600	POPTR_0012s14600 (11)	scaffold_12:14429224-14430357(-) (11)	NA	NA	NA	AT5G51510.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1352 (InterPro:IPR009787); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g36480.1	expressed protein	AC235753_11.1	hypothetical protein AC235753.1 68157-63742 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.229.1.A1_at	A	A1TS	POPTR_0018s12730	POPTR_0018s12730 (11)	scaffold_18:13241987-13242243(-) (11)	NA	NA	NA	AT5G32440.3	Ubiquitin system component Cue protein 	LOC_Os02g09180.1	"CUE domain containing protein, expressed"	Medtr4g005650.1	Ubiquitin system component Cue; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.229.1.A1_s_at	A	A1TS	POPTR_0018s12730	POPTR_0018s12730 (11)	scaffold_18:13241469-13241956(-) (11)	NA	NA	NA	AT5G32440.3	Ubiquitin system component Cue protein 	LOC_Os02g09180.1	"CUE domain containing protein, expressed"	Medtr4g005650.1	Ubiquitin system component Cue; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2290.1.S1_at	A	A1TS	POPTR_0001s12630	POPTR_0001s12630 (11)	scaffold_1:9782888-9782955(-) (11)	NA	Q43291	60S ribosomal protein L21-1	AT1G09690.1	Translation protein SH3-like family protein 	LOC_Os03g04750.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2290.1.S1_s_at	A	A2TS	POPTR_0001s12630	POPTR_0003s15780 (11)//POPTR_0001s12630 (11)	scaffold_1:9782987-9783371(-) (10)//scaffold_3:15485862-15486264(-) (11)	NA	Q43291	60S ribosomal protein L21-1	AT1G09690.1	Translation protein SH3-like family protein 	LOC_Os03g04750.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2290.1.S1_x_at	A	A1TS	POPTR_0001s12630	POPTR_0001s12630 (11)	scaffold_1:9782888-9783439(-) (11)	NA	Q43291	60S ribosomal protein L21-1	AT1G09690.1	Translation protein SH3-like family protein 	LOC_Os03g04750.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2291.1.S1_a_at	A	A1TS	POPTR_0008s10710	POPTR_0008s10710 (11)	scaffold_8:6723152-6723262(-) (11)	NA	Q9M7X7	60S ribosomal protein L29-1	AT3G06700.3	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g137850.1	Ribosomal L29e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2291.2.S1_at	A	A1TA	POPTR_0018s14640	POPTR_0018s14640 (9)	scaffold_18:14779976-14780186(-) (9)	NA	Q6MAS9	Glycogen synthase	AT4G18240.1	starch synthase 4 	LOC_Os01g52250.4	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.2291.3.S1_at	A	A1MS	POPTR_0008s10710	POPTR_0008s10710 (11)	scaffold_8:6723489-6723576(-) (11)	NA	Q9M7X7	60S ribosomal protein L29-1	AT3G06700.3	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g137850.1	Ribosomal L29e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2292.1.A1_at	A	A1TS	POPTR_0005s11290	POPTR_0005s11290 (11)	scaffold_5:8178005-8178339(-) (11)	NA	Q39435	Rac-like GTP-binding protein RHO1	AT2G17800.2	Arabidopsis RAC-like 1 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2292.1.A1_s_at	A	A2TS	POPTR_0005s11290	POPTR_0007s09170 (11)//POPTR_0005s11290 (11)	scaffold_5:8178125-8178579(-) (11)//scaffold_7:8384456-8384898(-) (11)	NA	Q39435	Rac-like GTP-binding protein RHO1	AT2G17800.2	Arabidopsis RAC-like 1 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2295.1.A1_at	A	A1TS	POPTR_0001s06240	POPTR_0001s06240 (10)	scaffold_1:4815181-4815439(+) (10)	NA	NA	NA	AT3G54500.2	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g31360.4	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2296.1.A1_a_at	A	A1TS	POPTR_0016s05880	POPTR_0016s05880 (11)	scaffold_16:3820447-3820519(+) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os01g61420.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2297.1.A1_at	A	A1TS	POPTR_0008s04590	POPTR_0008s04590 (11)	scaffold_8:2617221-2619000(+) (11)	NA	Q9ZUU1	"Probable adenylate kinase 1, chloroplastic"	AT2G37250.1	adenosine kinase 	LOC_Os03g03820.1	"adenylate kinase, putative, expressed"	Medtr7g120720.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.2298.1.A1_at	A	A1TS	POPTR_0016s10930	POPTR_0016s10930 (10)	scaffold_16:9327380-9327586(+) (10)	NA	Q3EBL9	Vacuolar protein-sorting-associated protein 37 homolog 2	AT2G36680.1	Modifier of rudimentary (Mod(r)) protein 	LOC_Os03g08770.1	"modifier of rudimentary protein, expressed"	Medtr7g124470.1	"Modifier of rudimentary, Modr "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2299.1.S1_at	A	A1TS	POPTR_0006s03960	POPTR_0006s03960 (9)	scaffold_6:2683841-2684805(-) (9)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.23.1.S1_at	A	A1TS	POPTR_0005s02340	POPTR_0005s02340 (11)	scaffold_5:1517954-1518577(-) (11)	NA	Q9ULC4	Malignant T cell-amplified sequence 1	AT1G09150.1	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein 	LOC_Os01g21180.1	"translation machinery-associated protein 20, putative, expressed"	Medtr3g123490.1	Uncharacterized domain 2 	NA	GO:0003723|RNA binding	NA
Ptp.23.2.S1_a_at	A	A2TS	POPTR_0005s02340	POPTR_0013s01530 (9)//POPTR_0005s02340 (9)	scaffold_13:867747-867868(-) (9)//scaffold_5:1520204-1520330(-) (9)	NA	Q9ULC4	Malignant T cell-amplified sequence 1	AT1G09150.1	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein 	LOC_Os01g21180.1	"translation machinery-associated protein 20, putative, expressed"	Medtr3g123490.1	Uncharacterized domain 2 	NA	GO:0003723|RNA binding	NA
Ptp.2300.1.A1_at	A	A1TS	POPTR_0018s06210	POPTR_0018s06210 (11)	scaffold_18:5938484-5938643(+) (11)	NA	P53383	Protein mrp homolog	AT3G24430.1	ATP binding 	LOC_Os01g52170.1	expressed protein	Medtr6g102220.1	Mrp 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
Ptp.2301.1.A1_at	A	A1TS	POPTR_0017s14470	POPTR_0017s14470 (11)	scaffold_17:14504760-14505247(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
Ptp.2303.1.S1_at	A	A1TS	POPTR_0001s22160	POPTR_0001s22160 (11)	scaffold_1:20799298-20799574(-) (11)	NA	Q3T0E5	Adipocyte plasma membrane-associated protein	AT1G08470.1	strictosidine synthase-like 3 	LOC_Os03g53950.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
Ptp.2304.1.A1_s_at	A	A1TS	POPTR_0012s00600	POPTR_0012s00600 (11)	scaffold_12:298303-298741(+) (11)	NA	Q6LA42	Two-component response regulator-like APRR5	AT5G24470.1	pseudo-response regulator 5 	LOC_Os09g36220.2	"response regulator receiver domain containing protein, expressed"	Medtr3g122660.2	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
Ptp.2307.1.S1_at	A	A1TS	POPTR_0010s01880	POPTR_0010s01880 (11)	scaffold_10:2062533-2064634(-) (11)	POPTR_0010s01870 (6)	NA	NA	AT3G06330.1	RING/U-box superfamily protein 	LOC_Os02g06920.2	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr2g025600.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2307.1.S1_s_at	A	A2TS	POPTR_0010s01870	POPTR_0010s01870 (11)//POPTR_0010s01880 (11)	scaffold_10:2045252-2046462(-) (11)//scaffold_10:2062810-2064022(-) (11)	POPTR_0008s20080 (6)	NA	NA	AT3G06330.1	RING/U-box superfamily protein 	LOC_Os02g06920.2	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr2g025600.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2308.1.S1_s_at	A	A1TS	POPTR_0001s05560	POPTR_0001s05560 (11)	scaffold_1:4263838-4264120(-) (11)	NA	NA	NA	AT5G12950.1	Putative glycosyl hydrolase of unknown function (DUF1680) 	LOC_Os02g10190.1	"DUF1680 domain containing protein, putative, expressed"	Medtr4g086870.1	Protein of unknown function DUF1680 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.231.1.A1_s_at	A	A1TS	POPTR_0002s25480	POPTR_0002s25480 (11)	scaffold_2:22556600-22559763(+) (11)	NA	NA	NA	AT2G20230.1	Tetraspanin family protein 	LOC_Os06g51480.1	expressed protein	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.2310.1.A1_s_at	A	A1TS	POPTR_0001s14660	POPTR_0001s14660 (11)	scaffold_1:11505371-11505622(-) (10)//scaffold_1:11544526-11544781(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.2311.1.S1_at	A	A1TS	POPTR_0002s22600	POPTR_0002s22600 (10)	scaffold_2:19365688-19366246(-) (10)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.2313.1.A1_at	A	A1TS	POPTR_0002s12760	POPTR_0002s12760 (11)	scaffold_2:9501765-9504276(+) (11)	NA	Q6PBN4	"Coenzyme Q-binding protein COQ10 homolog, mitochondrial"	AT4G17650.1	Polyketide cyclase / dehydrase and lipid transport protein 	LOC_Os01g56560.1	"cyclase/dehydrase family protein, expressed"	Medtr3g147740.1	"aromatic-rich family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2316.1.S1_at	A	A1TS	POPTR_0002s18610	POPTR_0002s18610 (11)	scaffold_2:14490580-14491879(+) (11)	NA	P34791	"Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic"	AT3G62030.3	rotamase CYP 4 	LOC_Os01g18210.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr7g134340.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.2318.1.S1_at	A	A1TS	POPTR_0019s09020	POPTR_0019s09020 (11)	scaffold_19:10610071-10610551(-) (11)	NA	NA	NA	AT2G40800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56430.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g07382.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2320.1.S1_a_at	A	A1TS	POPTR_0001s16730	POPTR_0001s16730 (11)	scaffold_1:13513781-13514030(-) (11)	NA	Q9SYG7	Aldehyde dehydrogenase family 7 member B4	AT1G54100.2	aldehyde dehydrogenase 7B4 	LOC_Os09g26880.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g049500.1	Aldehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.2322.1.A1_at	A	A1TS	POPTR_0003s21080	POPTR_0003s21080 (11)	scaffold_3:19378802-19378953(+) (11)	NA	P28752	Tubulin alpha-1 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2322.1.A1_x_at	A	A1TS	POPTR_0003s21080	POPTR_0003s21080 (11)	scaffold_3:19378760-19378953(+) (11)	NA	P28752	Tubulin alpha-1 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2323.3.A1_at	A	A1TA	POPTR_0014s06790	POPTR_0014s06790 (9)	scaffold_14:5123706-5126639(-) (10)	POPTR_0014s06820 (6)	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	AC233070_7.1	Cytochrome P450 AC233070.4 33530-28470 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2324.1.A1_s_at	A	A1TS	POPTR_0007s13060	POPTR_0007s13060 (11)	scaffold_7:13243339-13244134(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G66530.2	Galactose mutarotase-like superfamily protein 	LOC_Os09g15820.1	"aldose 1-epimerase, putative, expressed"	Medtr5g020530.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.2327.1.A1_at	A	A1TS	POPTR_0013s00760	POPTR_0013s00760 (11)	scaffold_13:391566-391954(-) (11)	NA	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2329.1.S1_s_at	A	A1TS	POPTR_0009s15590	POPTR_0009s15590 (11)	scaffold_9:12026348-12026648(+) (11)	NA	Q23892	Lysosomal beta glucosidase	AT5G20950.2	Glycosyl hydrolase family protein 	LOC_Os03g53800.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.233.1.A1_a_at	A	A1TS	POPTR_0008s18280	POPTR_0008s18280 (10)	scaffold_8:12238079-12238189(-) (10)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.233.1.A1_at	A	A1MS	POPTR_0008s18280	POPTR_0008s18280 (11)	scaffold_8:12237804-12238058(-) (11)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.233.2.A1_at	A	A1TS	POPTR_0008s18280	POPTR_0008s18280 (10)	scaffold_8:12235807-12236000(-) (10)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.2330.1.S1_at	A	A1TS	POPTR_0001s21550	POPTR_0001s21550 (11)	scaffold_1:20054954-20055242(-) (11)	NA	NA	NA	AT1G15200.1	protein-protein interaction regulator family protein 	LOC_Os03g49520.1	"pinin/SDK/memA protein, putative, expressed"	Medtr2g007930.1	"Pinin/SDK/memA protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2332.2.A1_a_at	A	A1TS	POPTR_0008s19320	POPTR_0008s19320 (11)	scaffold_8:13273356-13275442(-) (11)	NA	Q91V92	ATP-citrate synthase	AT1G60810.1	ATP-citrate lyase A-2 	LOC_Os11g47330.1	"ATP-grasp domain containing protein, expressed"	Medtr5g035230.1	"ATP-grasp fold, succinyl-CoA synthetase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2334.1.A1_at	A	A2TS	POPTR_0006s05470	POPTR_0006s05470 (11)//POPTR_0831s00200 (10)	scaffold_6:3869831-3870263(-) (11)//scaffold_831:5736-6167(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2335.1.A1_at	A	A1TS	POPTR_0010s06770	POPTR_0010s06770 (11)	scaffold_10:8038211-8038631(-) (11)	NA	Q5AS82	GDP-mannose transporter 1	AT1G76340.1	golgi nucleotide sugar transporter 3 	LOC_Os03g11590.1	"integral membrane protein, putative, expressed"	Medtr1g126830.1	"Integral membrane protein, putative "	NA	NA	GO:0016020|membrane
Ptp.2337.1.S1_at	A	A1TS	POPTR_0004s04930	POPTR_0004s04930 (11)	scaffold_4:3698396-3698897(-) (11)	NA	P38460	Uncharacterized mitochondrial protein ymf17	AT5G02050.1	Mitochondrial glycoprotein family protein 	NA	NA	Medtr5g088110.1	Mitochondrial glycoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2338.1.S1_s_at	A	A1TS	POPTR_0011s11350	POPTR_0011s11350 (11)	scaffold_11:14075548-14075651(+) (11)	NA	Q9LKA5	"Uncharacterized protein At3g15000, mitochondrial"	AT3G15000.1	cobalt ion binding 	LOC_Os09g33480.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2339.1.S1_at	A	A1TS	POPTR_0015s13910	POPTR_0015s13910 (11)	scaffold_15:13674955-13675302(-) (11)	NA	NA	NA	AT5G52060.1	BCL-2-associated athanogene 1 	LOC_Os09g35630.1	"BAG domain-containing protein, putative, expressed"	Medtr1g129370.1	"Ubiquitin; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.234.1.A1_at	A	A1TS	POPTR_0003s05990	POPTR_0003s05990 (11)	scaffold_3:7354270-7355123(+) (11)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.5	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.234.1.A1_s_at	A	A2TS	POPTR_0001s17280	POPTR_0003s05990 (11)//POPTR_0001s17280 (11)	scaffold_1:14100340-14100724(-) (11)//scaffold_3:7354733-7355102(+) (11)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.2	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.2340.1.S1_at	A	A1TS	POPTR_0004s09020	POPTR_0004s09020 (11)	scaffold_4:7581787-7582253(+) (11)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2341.1.S1_at	A	A1TS	POPTR_0019s10490	POPTR_0019s10490 (11)	scaffold_19:12051099-12051475(+) (11)	NA	NA	NA	AT1G33800.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2342.1.A1_s_at	A	A1TS	POPTR_0018s08370	POPTR_0018s08370 (11)	scaffold_18:9311256-9311290(-) (11)	NA	Q86UW6	NEDD4-binding protein 2	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.4	"smr domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2343.1.S1_at	A	A1TS	POPTR_0001s00660	POPTR_0001s00660 (11)	scaffold_1:563594-565013(+) (11)	NA	NA	NA	AT5G51400.1	PLAC8 family protein 	LOC_Os03g01210.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr7g041040.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2344.1.A1_at	A	A1TS	POPTR_0005s21750	POPTR_0005s21750 (11)	scaffold_5:20854775-20855022(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2344.1.A1_x_at	A	A1TS	POPTR_0005s21750	POPTR_0005s21750 (11)	scaffold_5:20854775-20855186(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2345.1.S1_at	A	A2TS	POPTR_0008s02000	POPTR_0008s02000 (11)//POPTR_0341s00210 (11)	scaffold_341:9382-9769(+) (11)//scaffold_8:956407-956759(+) (11)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2347.1.A1_at	A	A1TS	POPTR_0004s21400	POPTR_0004s21400 (11)	scaffold_4:20546497-20547742(+) (11)	POPTR_0009s16660 (7)	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.1	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2347.1.A1_x_at	A	A1TS	POPTR_0004s21400	POPTR_0004s21400 (11)	scaffold_4:20546497-20547760(+) (11)	POPTR_0009s16660 (7)	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.1	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2348.2.S1_s_at	A	A1TS	POPTR_0016s12720	POPTR_0016s12720 (10)	scaffold_16:12098581-12099133(+) (10)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.235.1.S1_s_at	A	A1TS	POPTR_0006s00650	POPTR_0006s00650 (11)	scaffold_6:341175-341531(-) (11)	NA	Q8LFN9	Probable ADP-ribosylation factor GTPase-activating protein AGD13	AT5G47710.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os09g07800.1	expressed protein	Medtr2g032750.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2351.1.S1_at	A	A1TS	POPTR_0018s13940	POPTR_0018s13940 (10)	scaffold_18:14215597-14215729(-) (10)	NA	NA	NA	AT4G30010.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g07910.2	"fiber protein Fb15, putative, expressed"	Medtr2g042700.1	"fiber protein Fb15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2354.1.S1_s_at	A	A1TS	POPTR_0010s25300	POPTR_0010s25300 (11)	scaffold_10:21036189-21039064(-) (11)	NA	Q54NC1	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr3g111130.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2358.1.S1_at	A	A1TS	POPTR_0012s05410	POPTR_0012s05410 (11)	scaffold_12:5050550-5051766(-) (11)	NA	Q9C9C4	"Enolase 1, chloroplastic"	AT1G74030.1	enolase 1 	LOC_Os09g20820.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.2359.2.S1_a_at	A	A1TS	POPTR_0006s05000	POPTR_0006s05000 (11)	scaffold_6:3481602-3483642(-) (11)	NA	O22944	Protein N-terminal glutamine amidohydrolase	AT2G41760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function WDYHV (InterPro:IPR019161); Has 201 Blast hits to 201 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os05g32190.1	"tungus CG8253-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2359.2.S1_s_at	A	A1TS	POPTR_0006s05000	POPTR_0006s05000 (11)	scaffold_6:3482250-3484149(-) (11)	NA	O22944	Protein N-terminal glutamine amidohydrolase	AT2G41760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function WDYHV (InterPro:IPR019161); Has 201 Blast hits to 201 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os05g32190.1	"tungus CG8253-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.236.1.S1_s_at	A	A1TS	POPTR_0014s14420	POPTR_0014s14420 (11)	scaffold_14:10575514-10575588(+) (11)	NA	Q9C5Z2	Eukaryotic translation initiation factor 3 subunit H	AT1G10840.1	translation initiation factor 3 subunit H1 	LOC_Os04g30780.1	"eukaryotic translation initiation factor 3 subunit H, putative, expressed"	Medtr7g021910.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2360.1.S1_at	A	A1TS	POPTR_0019s09740	POPTR_0019s09740 (11)	scaffold_19:11336853-11336955(-) (11)	NA	Q9C9H5	Endoglucanase 9	AT1G71380.1	cellulase 3 	LOC_Os04g36610.1	"endoglucanase, putative"	Medtr3g016610.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2360.1.S1_s_at	A	A1TS	POPTR_0019s09740	POPTR_0019s09740 (11)	scaffold_19:11337034-11337416(-) (11)	NA	Q9C9H5	Endoglucanase 9	AT1G71380.1	cellulase 3 	LOC_Os04g36610.1	"endoglucanase, putative"	Medtr3g016610.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2361.1.S1_at	A	A1TS	POPTR_0008s18260	POPTR_0008s18260 (11)	scaffold_8:12224832-12225415(-) (11)	NA	O04450	T-complex protein 1 subunit epsilon	AT1G24510.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g36700.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.2363.1.S1_s_at	A	A1TS	POPTR_0006s11620	POPTR_0006s11620 (10)	scaffold_6:8828262-8828530(+) (10)	NA	Q08047	"1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic"	AT5G03650.1	starch branching enzyme 2.2 	LOC_Os02g32660.1	"1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed"	Medtr7g126840.1	"Alpha amylase, C-terminal all-beta; "	GO:0005975|carbohydrate metabolic process	GO:0043169|cation binding||GO:0003824|catalytic activity	NA
Ptp.2364.1.S1_at	A	A1TS	POPTR_0011s05990	POPTR_0011s05990 (10)	scaffold_11:6013732-6014639(-) (10)	NA	Q6Z7L8	Rac-like GTP-binding protein 7	AT5G45970.1	RAC-like 2 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr2g132410.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2365.1.S1_at	A	A1MS	POPTR_0009s01640	POPTR_0009s01640 (11)	scaffold_9:2175533-2175813(+) (11)	NA	NA	NA	AT2G28320.1	Pleckstrin homology (PH) and lipid-binding START domains-containing protein 	LOC_Os10g33930.1	"DUF1336 domain containing protein, expressed"	Medtr2g110100.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2368.1.S1_s_at	A	A1TS	POPTR_0002s21340	POPTR_0002s21340 (10)	scaffold_2:17780043-17781259(+) (10)	NA	P40782	Cyprosin (Fragment)	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.2369.1.S1_s_at	A	A1TS	POPTR_0001s17940	POPTR_0001s17940 (11)	scaffold_1:14875823-14876155(-) (11)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.1	"coatomer subunit beta, putative, expressed"	AC234703_19.3	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.2369.2.S1_at	A	A1TS	POPTR_0001s17940	POPTR_0001s17940 (11)	scaffold_1:14874748-14875014(-) (11)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.1	"coatomer subunit beta, putative, expressed"	AC234703_19.3	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.237.1.S2_s_at	A	A1TS	POPTR_0004s23490	POPTR_0004s23490 (11)	scaffold_4:22204163-22204561(-) (11)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.2370.1.A1_at	A	A1TS	POPTR_0008s10480	POPTR_0008s10480 (11)	scaffold_8:6566388-6566440(-) (11)	NA	Q54YA0	Probable ATP-citrate synthase	AT3G06650.1	ATP-citrate lyase B-1 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2371.1.A1_at	A	A1TS	POPTR_0011s12760	POPTR_0011s12760 (10)	scaffold_11:15446194-15446677(-) (10)	NA	Q8L6Y1	Ubiquitin carboxyl-terminal hydrolase 14	AT3G20630.1	ubiquitin-specific protease 14 	LOC_Os01g08200.1	"ubiquitin carboxyl-terminal hydrolase 14, putative, expressed"	Medtr2g095540.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; UBA-like "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
Ptp.2373.1.A1_at	A	A1TS	POPTR_0001s16030	POPTR_0001s16030 (10)	scaffold_1:12846575-12847001(-) (10)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT1G52310.1	protein kinase family protein / C-type lectin domain-containing protein 	LOC_Os01g01410.1	"TKL_IRAK_C-LEC.1 - TKL_IRAK_C-LEC has homology to C-type lectin receptors, expressed"	Medtr2g126640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2374.1.S1_at	A	A1TS	POPTR_0015s08190	POPTR_0015s08190 (9)	scaffold_15:9447273-9447556(-) (9)	NA	Q9S795	"Betaine aldehyde dehydrogenase 1, chloroplastic"	AT1G74920.1	aldehyde dehydrogenase 10A8 	LOC_Os04g39020.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125020.1	"Betaine aldehyde dehydrogenase 1, chloroplast precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.2375.1.A1_at	A	A1TS	POPTR_0014s17230	POPTR_0014s17230 (11)	scaffold_14:13366572-13367543(-) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2379.2.S1_a_at	A	A1TS	POPTR_0012s08010	POPTR_0012s08010 (11)	scaffold_12:9021363-9021956(+) (11)	NA	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.238.1.A1_at	A	A1TS	POPTR_0018s13570	POPTR_0018s13570 (9)	scaffold_18:13851534-13852242(-) (9)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2380.1.A1_s_at	A	A1TS	POPTR_0001s30020	POPTR_0001s30020 (11)	scaffold_1:28595468-28595736(-) (11)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.2381.1.S1_at	A	A1TS	POPTR_0016s10420	POPTR_0016s10420 (11)	scaffold_16:8650941-8651425(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g018920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2382.2.A1_a_at	A	A1TS	POPTR_0005s23140	POPTR_0005s23140 (11)	scaffold_5:21958073-21958117(+) (11)	NA	Q75HV0	Cyclin-P3-1	AT3G63120.1	cyclin p1;1 	LOC_Os05g33040.3	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2383.1.S1_at	A	A1MS	POPTR_0012s05490	POPTR_0012s05490 (9)	scaffold_12:5156556-5156782(-) (9)	NA	Q7ZXX2	Kinesin-like protein KIF19	AT1G18550.1	ATP binding microtubule motor family protein 	LOC_Os01g42070.1	"kinesin motor domain containing protein, putative, expressed"	Medtr8g115780.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.2386.1.A1_at	A	A1TS	POPTR_0014s03590	POPTR_0014s03590 (11)	scaffold_14:2867644-2868177(-) (11)	NA	Q9SX97	Dof zinc finger protein DOF1.6	AT1G47655.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2388.1.A1_s_at	A	A1TS	POPTR_0001s03860	POPTR_0001s03860 (11)	scaffold_1:3110395-3111444(-) (11)	NA	NA	NA	AT4G26410.1	Uncharacterised conserved protein UCP022280 	LOC_Os03g20860.1	expressed protein	Medtr4g115230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2390.2.A1_a_at	A	A1TS	POPTR_0003s05520	POPTR_0003s05520 (10)	scaffold_3:6822028-6822093(-) (10)	NA	NA	NA	AT1G80000.2	CASC3/Barentsz eIF4AIII binding 	LOC_Os01g41190.2	"glycine-rich protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2391.2.S1_at	A	A1TA	POPTR_0004s22020	POPTR_0004s22020 (10)	scaffold_4:20967332-20967878(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2392.1.A1_at	A	A1TS	POPTR_0003s20170	POPTR_0003s20170 (10)	scaffold_3:18744736-18745080(+) (10)	NA	NA	NA	AT3G08550.1	elongation defective 1 protein / ELD1 protein 	LOC_Os01g13200.1	"abscisic acid insensitive 8, putative, expressed"	Medtr3g026170.1	"ABI8/ELD1/KOB1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2393.1.S1_at	A	A1TS	POPTR_0014s10670	POPTR_0014s10670 (11)	scaffold_14:7946044-7946829(+) (11)	NA	Q8K2Y7	"39S ribosomal protein L47, mitochondrial"	AT1G07830.1	ribosomal protein L29 family protein 	LOC_Os06g03790.1	"39S ribosomal protein L47, mitochondrial precursor, putative, expressed"	Medtr5g015940.1	Ribosomal protein L29; Alpha-helical ferredoxin; Mitochondrial 39-S ribosomal L47 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005761|mitochondrial ribosome
Ptp.2393.1.S1_s_at	A	A1TS	POPTR_0014s10670	POPTR_0014s10670 (11)	scaffold_14:7946907-7947156(+) (11)	NA	Q8K2Y7	"39S ribosomal protein L47, mitochondrial"	AT1G07830.1	ribosomal protein L29 family protein 	LOC_Os06g03790.1	"39S ribosomal protein L47, mitochondrial precursor, putative, expressed"	Medtr5g015940.1	Ribosomal protein L29; Alpha-helical ferredoxin; Mitochondrial 39-S ribosomal L47 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005761|mitochondrial ribosome
Ptp.2394.1.S1_a_at	A	A1TS	POPTR_0006s09380	POPTR_0006s09380 (10)	scaffold_6:6891635-6892505(-) (10)	NA	NA	NA	AT3G53990.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g63010.1	"universal stress protein domain containing protein, putative, expressed"	Medtr7g071220.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.2396.1.A1_at	A	A1TS	POPTR_0003s09590	POPTR_0003s09590 (10)	scaffold_3:10885140-10885210(-) (10)	NA	Q38908	Probable xyloglucan endotransglucosylase/hydrolase protein 30	AT1G32170.1	xyloglucan endotransglucosylase/hydrolase 30 	LOC_Os02g03550.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr5g029020.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2396.1.A1_s_at	A	A1TS	POPTR_0003s09590	POPTR_0003s09590 (11)	scaffold_3:10885311-10885618(-) (11)	NA	Q38908	Probable xyloglucan endotransglucosylase/hydrolase protein 30	AT1G32170.1	xyloglucan endotransglucosylase/hydrolase 30 	LOC_Os02g03550.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr5g029020.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2397.1.A1_at	A	A1TS	POPTR_0006s07190	POPTR_0006s07190 (10)	scaffold_6:5169778-5170290(+) (10)	NA	Q9VQP9	Putative oligosaccharyltransferase complex subunit CG9662	AT4G29870.1	Oligosaccharyltransferase complex/magnesium transporter family protein 	LOC_Os02g21080.1	"AGAP008475-PA, putative, expressed"	Medtr2g043130.1	"UPF0527 membrane protein B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2398.1.S1_s_at	A	A1TS	POPTR_0007s06770	POPTR_0007s06770 (10)	scaffold_7:5137484-5137517(+) (10)	NA	Q9SJ12	"Probable ATP synthase 24 kDa subunit, mitochondrial"	AT2G21870.1	copper ion binding;cobalt ion binding;zinc ion binding 	LOC_Os02g03860.1	"mitochondrial ATP synthase precursor, putative, expressed"	Medtr4g141050.1	"Probable ATP synthase 24 kDa subunit, mitochondrial precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2399.1.S1_s_at	A	A1TS	POPTR_0004s17810	POPTR_0004s17810 (11)	scaffold_4:17845135-17845375(+) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022110.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.24.1.S1_s_at	A	A1TS	POPTR_0017s13710	POPTR_0017s13710 (11)	scaffold_17:13791182-13793996(+) (11)	NA	NA	NA	AT5G64130.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os05g49160.2	expressed protein	Medtr2g077020.1	Lg106-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2400.1.S1_at	A	A1TS	POPTR_0008s08910	POPTR_0008s08910 (9)	scaffold_8:5499013-5499655(+) (10)//scaffold_8:5523526-5524167(+) (9)	NA	Q8H1U5	Anaphase-promoting complex subunit 2	AT2G04660.1	anaphase-promoting complex/cyclosome 2 	LOC_Os04g40830.1	"cullin family domain containing protein, putative, expressed"	Medtr4g111940.1	Cullin; N-6 Adenine-specific DNA methylase 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.2402.1.S1_s_at	A	A1TS	POPTR_0006s26400	POPTR_0006s26400 (11)	scaffold_6:24615817-24617806(-) (11)	NA	Q54CV3	Coiled-coil domain-containing protein 93 homolog	AT4G32560.2	paramyosin-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2403.1.S1_s_at	A	A1TS	POPTR_0001s15290	POPTR_0001s15290 (11)	scaffold_1:12117405-12117508(-) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2404.1.S1_at	A	A1TS	POPTR_0005s18480	POPTR_0005s18480 (10)	scaffold_5:16719412-16719707(+) (10)	NA	NA	NA	AT5G67210.1	Protein of unknown function (DUF579) 	LOC_Os06g47310.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr4g130370.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2406.2.S1_a_at	A	A1TS	POPTR_0003s21070	POPTR_0003s21070 (11)	scaffold_3:19366088-19366956(-) (11)	NA	P0C582	Putative mitochondrial 2-oxoglutarate/malate carrier protein	AT5G19760.1	Mitochondrial substrate carrier family protein 	LOC_Os05g11780.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g134510.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2408.1.A1_at	A	A1TS	POPTR_0002s12150	POPTR_0002s12150 (11)	scaffold_2:9011340-9011806(-) (11)	POPTR_1058s00200 (6)	O74913	Uncharacterized protein C757.02c	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2409.1.S1_at	A	A1TS	POPTR_0013s07550	POPTR_0013s07550 (11)	scaffold_13:6382959-6383454(+) (11)	NA	NA	NA	AT5G16680.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os12g24540.1	"PHD-finger family protein, expressed"	Medtr5g007340.1	"Zinc finger, FYVE/PHD-type; "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2412.1.A1_s_at	A	A1TS	POPTR_0014s12060	POPTR_0014s12060 (11)	scaffold_14:8928174-8928459(+) (11)	NA	O81635	Kinesin-4	AT2G47500.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.2414.1.S1_at	A	A1TS	POPTR_0004s16220	POPTR_0004s16220 (11)	scaffold_4:16627671-16628855(-) (11)	NA	NA	NA	AT4G39300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr4g095570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2415.1.A1_s_at	A	A1TS	POPTR_0002s03810	POPTR_0002s03810 (11)	scaffold_2:2365642-2365778(-) (11)	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.2416.2.S1_s_at	A	A1TS	POPTR_0001s29670	POPTR_0001s29670 (11)	scaffold_1:28311245-28311421(-) (11)	NA	P33629	Tubulin alpha chain	AT4G14960.2	Tubulin/FtsZ family protein 	LOC_Os11g14220.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2419.1.S1_at	A	A1TS	POPTR_0006s28360	POPTR_0006s28360 (11)	scaffold_6:26062394-26062596(-) (11)	NA	Q96361	ADP-ribosylation factor 1	AT2G24765.1	ADP-ribosylation factor 3 	LOC_Os08g15040.1	"ADP-ribosylation factor, putative, expressed"	Medtr8g128220.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2420.1.S1_at	A	A1TS	POPTR_0002s09625	POPTR_0002s09625 (9)	scaffold_2:6897912-6898445(-) (9)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os05g07740.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g019670.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.2421.2.S1_a_at	A	A1TS	POPTR_0012s09190	POPTR_0012s09190 (10)	scaffold_12:10252832-10253151(+) (10)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os01g68060.1	"copine, putative, expressed"	Medtr6g022780.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2425.1.S1_at	A	A1TS	POPTR_0008s06460	POPTR_0008s06460 (11)	scaffold_8:3829016-3829538(-) (11)	NA	O04197	Coronatine-insensitive protein 1	AT2G39940.1	RNI-like superfamily protein 	LOC_Os05g37690.1	"OsFBL23 - F-box domain and LRR containing protein, expressed"	Medtr5g089200.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2427.1.A1_at	A	A1MS	POPTR_0008s20030	POPTR_0008s20030 (11)	scaffold_8:13830556-13830693(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2427.1.A1_s_at	A	A1TS	POPTR_0008s20030	POPTR_0008s20030 (11)	scaffold_8:13830746-13831047(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2428.1.S1_at	A	A1TS	POPTR_0011s14970	POPTR_0011s14970 (11)	scaffold_11:17180685-17181458(-) (11)	NA	O81635	Kinesin-4	AT5G65930.2	kinesin-like calmodulin-binding protein (ZWICHEL) 	LOC_Os04g57140.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g025080.1	"Band 4.1; Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4; Kinesin, motor region; Prismane-like "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	GO:0005856|cytoskeleton
Ptp.243.1.A1_at	A	A1TS	POPTR_0006s11140	POPTR_0006s11140 (10)	scaffold_6:8455933-8456241(+) (10)	NA	Q9XG77	Proteasome subunit alpha type-6	AT2G05840.1	20S proteasome subunit PAA2 	LOC_Os03g08280.2	"peptidase, T1 family, putative, expressed"	Medtr2g071490.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.2430.1.A1_at	A	A1TS	POPTR_0008s01200	POPTR_0008s01200 (11)	scaffold_8:579270-579744(+) (11)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20790.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.2431.1.A1_at	A	A1TS	POPTR_0014s11570	POPTR_0014s11570 (11)	scaffold_14:8570774-8570959(-) (11)	NA	Q8VZF3	"Probable glutamyl endopeptidase, chloroplastic"	AT2G47390.1	Prolyl oligopeptidase family protein 	LOC_Os03g19410.1	"OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g132980.1	"Peptidase S9, prolyl oligopeptidase active site region "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
Ptp.2432.1.S1_a_at	A	A1TS	POPTR_0015s01150	POPTR_0015s01150 (11)	scaffold_15:707768-708744(+) (11)	NA	Q9T096	Protein yippee-like At4g27745	AT4G27745.1	Yippee family putative zinc-binding protein 	LOC_Os12g29960.1	"yippee zinc-binding protein, putative"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2433.1.S1_s_at	A	A1TS	POPTR_0006s02150	POPTR_0006s02150 (11)	scaffold_6:1403167-1403542(-) (11)	NA	Q9LIE5	Protein FAR-RED ELONGATED HYPOCOTYL 3	AT3G22170.2	far-red elongated hypocotyls 3 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.2434.1.S1_x_at	A	A1TS	POPTR_0009s02370	POPTR_0009s02370 (11)	scaffold_9:3120534-3121054(+) (11)	NA	Q84WM9	Elongation factor 1-beta 1	AT5G12110.1	"Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6 "	LOC_Os07g46750.1	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.2437.1.S1_at	A	A1TS	POPTR_0008s11980	POPTR_0008s11980 (11)	scaffold_8:7717224-7718295(-) (11)	NA	NA	NA	AT1G13380.1	Protein of unknown function (DUF1218) 	LOC_Os09g10910.3	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2438.1.A1_at	A	A2TS	POPTR_0010s22580	POPTR_0010s22610 (11)//POPTR_0010s22580 (11)	scaffold_10:19442002-19442324(-) (11)//scaffold_10:19453805-19454121(+) (11)	NA	NA	NA	AT2G35790.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724); Has 116 Blast hits to 116 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os03g63680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2439.1.S1_at	A	A1TS	POPTR_0004s16950	POPTR_0004s16950 (9)	scaffold_4:17324372-17324917(-) (9)	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT4G38960.1	B-box type zinc finger family protein 	LOC_Os09g35880.1	"B-box zinc finger family protein, putative, expressed"	Medtr5g021510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.2440.1.S1_x_at	A	A1TS	POPTR_0001s18730	POPTR_0001s18730 (11)	scaffold_1:15868245-15868976(+) (11)	NA	Q41951	Aquaporin TIP2-1	AT3G16240.1	delta tonoplast integral protein 	LOC_Os06g22960.1	"aquaporin protein, putative, expressed"	Medtr8g015170.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2440.2.A1_s_at	A	A1TS	POPTR_0018s14020	POPTR_0018s14020 (11)	scaffold_18:14280750-14281110(+) (11)	NA	O65351	Subtilisin-like protease	AT4G30020.1	PA-domain containing subtilase family protein 	LOC_Os06g48650.2	"OsSub52 - Putative Subtilisin homologue, expressed"	Medtr2g042580.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	GO:0005618|cell wall||GO:0016020|membrane
Ptp.2441.1.S1_x_at	A	A1TS	POPTR_0017s05770	POPTR_0017s05770 (11)	scaffold_17:4498742-4500543(-) (11)	NA	Q42896	Fructokinase-2	AT3G59480.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g66940.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2442.1.S1_s_at	A	A1TS	POPTR_0001s21520	POPTR_0001s21520 (11)	scaffold_1:20009425-20009897(-) (11)	NA	P43255	COP9 signalosome complex subunit 8	AT4G14110.1	"COP9 signalosome, subunit CSN8 "	LOC_Os04g34930.1	"COP9 signalosome complex subunit 8, putative, expressed"	Medtr2g007990.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2443.1.A1_at	A	A1TS	POPTR_0004s01310	POPTR_0004s01310 (9)	scaffold_4:711953-712340(+) (9)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2445.1.S1_at	A	A1TS	POPTR_0004s18730	POPTR_0004s18730 (11)	scaffold_4:18507698-18508355(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os06g46500.1	"monocopper oxidase, putative, expressed"	Medtr2g104340.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2446.1.S1_s_at	A	A1TS	POPTR_0004s03230	POPTR_0004s03230 (11)	scaffold_4:2174372-2174667(-) (11)	NA	NA	NA	AT4G05150.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os07g37040.1	"PB1 domain containing protein, expressed"	Medtr4g124660.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2448.1.S1_at	A	A1TS	POPTR_0002s24410	POPTR_0002s24410 (11)	scaffold_2:21786902-21788541(+) (11)	NA	Q9SVR0	60S ribosomal protein L13a-3	AT4G13170.1	Ribosomal protein L13 family protein 	LOC_Os03g54890.1	"ribosomal protein L13, putative, expressed"	Medtr5g091220.1	"Ribosomal protein L13, archea and eukaryotic form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2450.1.S1_at	A	A1TS	POPTR_0004s17030	POPTR_0004s17030 (11)	scaffold_4:17404317-17404640(-) (11)	NA	P59227	V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5	AT4G34720.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os02g34510.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.2453.1.S1_at	A	A1TS	POPTR_0015s13500	POPTR_0015s13500 (10)	scaffold_15:13419530-13419709(-) (10)	NA	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os10g35870.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.2456.2.S1_a_at	A	A1TS	POPTR_0007s14910	POPTR_0007s14910 (11)	scaffold_7:14600677-14602231(-) (11)	NA	Q66XS7	"NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial"	AT5G67590.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os07g39710.1	"NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed"	Medtr8g101670.1	ETC complex I subunit conserved region 	GO:0022900|electron transport chain	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH"""	GO:0005743|mitochondrial inner membrane
Ptp.2457.1.S1_s_at	A	A1TS	POPTR_0013s00550	POPTR_0013s00550 (11)	scaffold_13:260407-260822(-) (11)	NA	A9PDZ7	S-adenosylmethionine synthase 2	AT3G17390.1	S-adenosylmethionine synthetase family protein 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.2461.1.S1_at	A	A1TS	POPTR_0006s08670	POPTR_0006s08670 (11)	scaffold_6:6352120-6352735(+) (11)	NA	Q9LZM1	Oxysterol-binding protein-related protein 3A	AT5G02100.1	Oxysterol-binding family protein 	LOC_Os03g16690.1	"oxysterol-binding protein, putative, expressed"	Medtr4g083830.1	Oxysterol-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2462.1.S1_at	A	A1TS	POPTR_0014s08500	POPTR_0014s08500 (10)	scaffold_14:6311614-6311880(-) (10)	NA	O04603	"50S ribosomal protein L5, chloroplastic"	AT4G01310.1	Ribosomal L5P family protein 	LOC_Os03g03360.1	"ribosomal protein L5, putative, expressed"	Medtr7g088500.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2463.1.S1_a_at	A	A1TS	POPTR_0013s03890	POPTR_0013s03890 (11)	scaffold_13:2551697-2551736(+) (11)//scaffold_876:4951-4984(-) (9)	NA	P02877	Pro-hevein	AT3G04720.1	pathogenesis-related 4 	LOC_Os11g37950.1	"WIP3 - Wound-induced protein precursor, expressed"	Medtr6g027840.1	"Glycoside hydrolase, family 19; Barwin-related endoglucanase "	GO:0050832|defense response to fungus||GO:0042742|defense response to bacterium	GO:0008061|chitin binding	NA
Ptp.2463.1.S1_s_at	A	A1TS	POPTR_0013s03890	POPTR_0013s03890 (11)	scaffold_13:2551182-2551571(+) (11)	NA	P02877	Pro-hevein	AT3G04720.1	pathogenesis-related 4 	LOC_Os11g37950.1	"WIP3 - Wound-induced protein precursor, expressed"	Medtr6g027840.1	"Glycoside hydrolase, family 19; Barwin-related endoglucanase "	GO:0050832|defense response to fungus||GO:0042742|defense response to bacterium	GO:0008061|chitin binding	NA
Ptp.2464.1.A1_s_at	A	A1TS	POPTR_0007s06050	POPTR_0007s06050 (9)	scaffold_7:4197507-4199212(+) (9)	NA	Q9M5M6	60S ribosomal protein L30	AT1G77940.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2467.1.A1_at	A	A1TS	POPTR_0019s14590	POPTR_0019s14590 (11)	scaffold_19:15331318-15331591(+) (11)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2467.1.A1_x_at	A	A1TS	POPTR_0019s14590	POPTR_0019s14590 (11)	scaffold_19:15331259-15331591(+) (11)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2472.1.A1_s_at	A	A1TS	POPTR_0001s44450	POPTR_0001s44450 (11)	scaffold_1:44870688-44871101(+) (11)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.2	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.2473.1.A1_s_at	A	A1TS	POPTR_0005s21870	POPTR_0005s21870 (11)	scaffold_5:20921060-20921116(-) (11)	NA	Q9SQI2	Protein GIGANTEA	AT1G22770.1	gigantea protein (GI) 	LOC_Os01g08700.6	"GIGANTEA, putative, expressed"	Medtr1g124650.2	"Protein GIGANTEA, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2474.1.S1_at	A	A1MS	POPTR_0010s12350	POPTR_0010s12350 (10)	scaffold_10:12378181-12378493(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2475.2.A1_a_at	A	A1TS	POPTR_0010s10300	POPTR_0010s10300 (11)	scaffold_10:10836352-10836615(-) (11)	NA	P00693	Alpha-amylase type A isozyme	AT1G69830.1	alpha-amylase-like 3 	LOC_Os01g51754.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
Ptp.2477.1.S1_s_at	A	A1TS	POPTR_0001s00410	POPTR_0001s00410 (11)	scaffold_1:310871-311055(+) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT4G12510.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46810.1	"LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106200.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2478.1.S1_at	A	A1TS	POPTR_0001s36780	POPTR_0001s36780 (11)	scaffold_1:35496174-35496720(+) (11)	NA	Q924N4	Solute carrier family 12 member 6	AT1G30450.2	cation-chloride co-transporter 1 	LOC_Os08g23440.1	"amino acid permease family protein, putative, expressed"	Medtr2g055760.1	Interleukin-6/G-CSF/MGF; Amino acid permease-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.248.1.A1_s_at	A	A1TS	POPTR_0004s05630	POPTR_0004s05630 (11)	scaffold_4:4394257-4394780(+) (11)	NA	Q54WA3	Peroxisomal targeting signal 2 receptor	AT1G29260.1	peroxin 7 	LOC_Os02g14790.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2480.1.S1_at	A	A1TS	POPTR_0006s04560	POPTR_0006s04560 (11)	scaffold_6:3109404-3110422(+) (11)	NA	Q8LAS8	S-formylglutathione hydrolase	AT2G41530.1	S-formylglutathione hydrolase 	LOC_Os01g71300.1	"S-formylglutathione hydrolase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2481.1.A1_s_at	A	A1TS	POPTR_0010s02450	POPTR_0010s02450 (11)	scaffold_10:2833549-2833961(-) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.2483.1.A1_at	A	A1TS	POPTR_0003s03720	POPTR_0003s03720 (11)	scaffold_3:4400109-4400905(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19410.1	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2483.1.A1_s_at	A	A1TS	POPTR_0003s03720	POPTR_0003s03720 (11)	scaffold_3:4400099-4400635(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19410.1	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2487.1.S1_s_at	A	A1TS	POPTR_0013s13090	POPTR_0013s13090 (11)	scaffold_13:13674582-13675128(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G59690.1	IQ-domain 13 	LOC_Os01g67090.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2488.1.S1_at	A	A1TS	POPTR_0001s10290	POPTR_0001s10290 (11)	scaffold_1:7979925-7979997(+) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2488.1.S1_x_at	A	A1TS	POPTR_0001s10290	POPTR_0001s10290 (11)	scaffold_1:7977089-7979997(+) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2489.1.A1_at	A	A1TS	POPTR_0003s20690	POPTR_0003s20690 (11)	scaffold_3:19162856-19163406(-) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.249.1.S1_at	A	A1TS	POPTR_0019s04230	POPTR_0019s04230 (11)	scaffold_19:4337083-4337705(+) (11)	NA	Q9M8Y0	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC	AT3G04240.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g68680.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2490.1.S1_at	A	A1TS	POPTR_0005s00810	POPTR_0005s00810 (9)	scaffold_5:370336-370953(-) (9)	NA	O80522	GDSL esterase/lipase At1g09390	AT1G09390.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g22780.2	"GDSL-like lipase/acylhydrolase, putative, expressed"	AC235094_3.1	"Lipolytic enzyme, G-D-S-L AC235094.1 17941-22012 E EGN_Mt090430 200"	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.2491.1.S1_at	A	A1TS	POPTR_0008s13620	POPTR_0008s13620 (9)	scaffold_8:8967460-8967682(+) (9)	NA	Q9S7U5	Heat stress transcription factor A-8	AT1G67970.1	heat shock transcription factor  A8 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g156700.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2492.1.S1_s_at	A	A1TS	POPTR_0007s09870	POPTR_0007s09870 (10)	scaffold_7:9392254-9392685(-) (10)	NA	Q9FJX6	Formin-like protein 6	AT5G67470.1	formin homolog 6 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr5g015760.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2493.1.A1_at	A	A1TS	POPTR_0015s01570	POPTR_0015s01570 (10)	scaffold_15:990814-991308(+) (10)	NA	Q8BVG4	Dipeptidyl peptidase 9	AT5G24260.1	prolyl oligopeptidase family protein 	LOC_Os02g18850.1	"OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr3g124020.2	"Peptidase S9, prolyl oligopeptidase active site region; Peptidase S9B, dipeptidylpeptidase IV N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	GO:0016020|membrane
Ptp.2494.1.S1_at	A	A1TS	POPTR_0003s06220	POPTR_0003s06220 (10)	scaffold_3:7698108-7698970(-) (10)	NA	P55039	Developmentally-regulated GTP-binding protein 2	AT1G72660.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g28940.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2495.1.S1_at	A	A1TS	POPTR_0016s14250	POPTR_0016s14250 (10)	scaffold_16:13503455-13503896(+) (10)	POPTR_0006s10840 (6)	NA	NA	AT1G29690.1	MAC/Perforin domain-containing protein 	LOC_Os01g54510.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr4g036780.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2497.1.S1_s_at	A	A2TS	POPTR_0017s02690	POPTR_0017s02690 (11)//POPTR_0293s00210 (10)	scaffold_17:1924777-1924988(-) (11)//scaffold_293:12491-12702(-) (10)	NA	Q9CXS4	Centromere protein V	AT5G16940.2	carbon-sulfur lyases 	LOC_Os09g23370.2	"proline-rich protein 6, putative, expressed"	Medtr3g087280.1	"Glutathione-dependent formaldehyde-activating, GFA "	GO:0008152|metabolic process	GO:0016846|carbon-sulfur lyase activity	NA
Ptp.2498.1.A1_s_at	A	A1TS	POPTR_0006s04570	POPTR_0006s04570 (11)	scaffold_6:3111270-3111555(-) (11)	NA	Q8RXS6	DNA helicase INO80 complex homolog 1	AT3G57300.1	INO80 ortholog 	LOC_Os03g22900.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.25.1.S1_at	A	A1TS	POPTR_0004s07040	POPTR_0004s07040 (11)	scaffold_4:5853202-5855019(-) (11)	NA	Q9FLX7	"Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial"	AT5G52840.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os03g19890.1	"NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed"	NA	NA	GO:0022904|respiratory electron transport chain	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH"""	GO:0005743|mitochondrial inner membrane
Ptp.2503.1.S1_at	A	A1TS	POPTR_0001s09330	POPTR_0001s09330 (11)	scaffold_1:7122642-7123179(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g149480.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2505.1.S1_s_at	A	A1TS	POPTR_0005s12770	POPTR_0005s12770 (11)	scaffold_5:9586084-9586456(+) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.2506.1.S1_at	A	A1TS	POPTR_0010s22750	POPTR_0010s22750 (11)	scaffold_10:19542482-19543567(-) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT2G37150.3	RING/U-box superfamily protein 	LOC_Os05g07070.8	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2507.1.A1_at	A	A1TS	POPTR_0017s02340	POPTR_0017s02340 (10)	scaffold_154:34895-35097(-) (9)//scaffold_17:1685928-1691638(-) (9)//scaffold_17:1717221-1717681(-) (10)	NA	Q43644	"NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial"	AT5G37510.1	"NADH-ubiquinone dehydrogenase, mitochondrial, putative "	LOC_Os03g50540.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr3g087270.1	Ferredoxin 	GO:0055114|oxidation reduction	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity"	NA
Ptp.2509.1.S1_at	A	A1TS	POPTR_0010s17060	POPTR_0010s17060 (11)	scaffold_10:15818514-15818806(+) (11)	NA	Q9C533	Probable S-acyltransferase At1g69420	AT1G69420.1	DHHC-type zinc finger family protein 	LOC_Os03g11110.1	"zinc finger family protein, putative, expressed"	Medtr5g045820.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.251.1.S1_at	A	A1TS	POPTR_0004s06460	POPTR_0004s06460 (11)	scaffold_4:5230281-5231595(+) (11)	NA	O23710	Proteasome subunit beta type-7-A	AT3G27430.2	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os05g09490.2	"peptidase, T1 family, putative, expressed"	Medtr7g032520.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.2510.2.S1_s_at	A	A1TS	POPTR_0008s01310	POPTR_0008s01310 (11)	scaffold_8:635742-635979(-) (11)	NA	Q66GR0	Fasciclin-like arabinogalactan protein 17	AT5G06390.1	FASCICLIN-like arabinogalactan protein 17 precursor 	LOC_Os03g57460.1	"fasciclin domain containing protein, expressed"	Medtr2g104610.1	Beta-Ig-H3/fasciclin; Myristoyl-CoA:protein N-myristoyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2511.1.S1_at	A	A1MS	POPTR_0011s09550	POPTR_0011s09550 (9)	scaffold_11:11874672-11874784(+) (9)	NA	Q8VYE2	Mitochondrial import inner membrane translocase subunit TIM50	AT1G55900.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g43770.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g103110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2512.1.S1_at	A	A1TS	POPTR_0002s03580	POPTR_0002s03580 (11)	scaffold_2:2220243-2220278(-) (11)	NA	P52577	Isoflavone reductase homolog P3	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.2512.1.S1_s_at	A	A1TS	POPTR_0002s03580	POPTR_0002s03580 (11)	scaffold_2:2219848-2220221(-) (11)	NA	P52577	Isoflavone reductase homolog P3	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.2512.1.S1_x_at	A	A1TS	POPTR_0002s03580	POPTR_0002s03580 (11)	scaffold_2:2219902-2220493(-) (11)	NA	P52577	Isoflavone reductase homolog P3	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.2514.1.S1_at	A	A1TS	POPTR_0003s19220	POPTR_0003s19220 (10)	scaffold_3:18012164-18012469(-) (10)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g124870.1	"Auxin-induced protein 5NG4, related "	NA	NA	GO:0016020|membrane
Ptp.2515.1.S1_at	A	A1TS	POPTR_0012s07560	POPTR_0012s07560 (10)	scaffold_12:8483787-8484009(-) (10)	NA	Q869R9	Myb-like protein J	AT1G19000.2	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2518.1.S1_at	A	A1TS	POPTR_0018s09730	POPTR_0018s09730 (11)	scaffold_18:10756337-10756625(-) (11)	NA	P17784	Fructose-bisphosphate aldolase cytoplasmic isozyme	AT2G36460.1	Aldolase superfamily protein 	LOC_Os05g33380.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g077730.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.2518.1.S1_x_at	A	A1TS	POPTR_0018s09730	POPTR_0018s09730 (11)	scaffold_18:10756279-10756625(-) (11)	NA	P17784	Fructose-bisphosphate aldolase cytoplasmic isozyme	AT2G36460.1	Aldolase superfamily protein 	LOC_Os05g33380.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g077730.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.252.1.A1_at	A	A1MA	POPTR_0010s09560	POPTR_0010s09560 (11)	scaffold_10:10316349-10316567(+) (11)	NA	Q5ZLM0	Parafibromin	AT3G22590.1	PLANT HOMOLOGOUS TO PARAFIBROMIN 	LOC_Os03g46190.2	"parafibromin, putative, expressed"	Medtr5g007100.1	"RNA pol II accessory factor, Cdc73 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2520.2.S1_s_at	A	A2TS	POPTR_0006s24780	POPTR_0006s24780 (11)//POPTR_0018s05010 (11)	scaffold_18:4432705-4432740(-) (11)//scaffold_6:23336135-23336170(+) (11)	NA	NA	NA	AT2G25970.1	KH domain-containing protein 	LOC_Os02g13130.1	"KH domain-containing protein, putative, expressed"	Medtr1g020830.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.2523.1.S1_at	A	A1TS	POPTR_0018s12410	POPTR_0018s12410 (9)	scaffold_18:12898250-12898282(+) (9)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr8g122340.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2523.1.S1_s_at	A	A1TS	POPTR_0018s12410	POPTR_0018s12410 (11)	scaffold_18:12897867-12898190(+) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr8g122340.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2524.1.S1_at	A	A1TS	POPTR_0008s13450	POPTR_0008s13450 (9)	scaffold_8:8857753-8858092(+) (9)	NA	NA	NA	AT1G68060.1	microtubule-associated proteins 70-1 	LOC_Os02g50320.1	"ATMAP70 protein, putative, expressed"	Medtr4g157060.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2525.1.S1_at	A	A1TS	POPTR_0001s31470	POPTR_0001s31470 (11)	scaffold_1:29762454-29763100(+) (11)	NA	P42734	Probable cinnamyl alcohol dehydrogenase 9	AT4G39330.1	cinnamyl alcohol dehydrogenase 9 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr4g141720.1	"Alcohol dehydrogenase, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2526.1.A1_at	A	A1TS	POPTR_0005s18960	POPTR_0005s18960 (11)	scaffold_5:17458603-17459332(+) (11)	NA	P28523	Casein kinase II subunit alpha	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2528.1.S1_s_at	A	A1TS	POPTR_0008s20300	POPTR_0008s20300 (11)	scaffold_8:14053434-14053921(-) (11)	NA	Q9ZS91	Peptide methionine sulfoxide reductase B5	AT4G04830.1	methionine sulfoxide reductase B5 	LOC_Os03g24600.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr2g026010.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
Ptp.253.1.S1_at	A	A1TS	POPTR_0002s05080	POPTR_0002s05080 (11)	scaffold_2:3289250-3289541(+) (11)	NA	Q54W07	Probable serine/threonine-protein kinase BUD32 homolog	AT5G26110.1	Protein kinase superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2530.1.S1_s_at	A	A1TS	POPTR_0003s02410	POPTR_0003s02410 (11)	scaffold_3:2500191-2500998(+) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.1	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2530.2.S1_s_at	A	A1TS	POPTR_0003s02400	POPTR_0003s02400 (11)	scaffold_3:2491801-2492065(+) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2532.1.S1_x_at	A	A1TS	POPTR_0014s07250	POPTR_0014s07250 (11)	scaffold_14:5478072-5478570(-) (11)	NA	O80845	Peroxisomal membrane protein 11D	AT2G45740.3	peroxin 11D 	LOC_Os06g03660.2	"peroxisomal biogenesis factor 11, putative, expressed"	Medtr7g083810.1	Peroxisomal biogenesis factor 11 	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
Ptp.2533.1.S1_at	A	A1TS	POPTR_0018s03690	POPTR_0018s03690 (11)	scaffold_18:3143034-3144896(+) (11)	NA	Q8LAZ7	COP9 signalosome complex subunit 5b	AT1G22920.1	COP9 signalosome 5A 	LOC_Os04g56070.1	"COP9 signalosome complex subunit 5b, putative, expressed"	Medtr3g133410.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2536.1.A1_at	A	A1TS	POPTR_0009s16500	POPTR_0009s16500 (11)	scaffold_9:12515821-12517878(-) (11)	NA	Q5R4W3	DNA polymerase epsilon subunit 3	AT2G27470.1	"nuclear factor Y, subunit B11 "	LOC_Os09g39490.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr4g140740.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2537.1.S1_at	A	A1TS	POPTR_0017s00360	POPTR_0017s00360 (9)	scaffold_17:110146-112674(+) (9)	NA	O80575	"6,7-dimethyl-8-ribityllumazine synthase, chloroplastic"	AT2G44050.1	"6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase "	LOC_Os04g42000.1	"6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	NA	GO:0009349|riboflavin synthase complex
Ptp.2538.1.S1_at	A	A1TS	POPTR_0006s12500	POPTR_0006s12500 (11)	scaffold_6:9657000-9657925(+) (11)	NA	Q7XSQ7	Thioredoxin-like 3-3	AT3G53220.1	Thioredoxin superfamily protein 	LOC_Os05g40190.1	"thioredoxin, putative, expressed"	Medtr8g005420.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2540.1.S1_s_at	A	A1TS	POPTR_0007s08390	POPTR_0007s08390 (11)	scaffold_7:7159698-7159858(+) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os02g32030.1	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2542.1.S1_at	A	A1TS	POPTR_0001s26150	POPTR_0001s26150 (11)	scaffold_1:25234502-25234944(+) (11)	NA	Q8L7T3	Ubiquitin-conjugating enzyme E2 20	AT1G50490.1	ubiquitin-conjugating enzyme 20 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g103970.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2545.1.S1_at	A	A1TS	POPTR_0013s13220	POPTR_0013s13220 (11)	scaffold_13:13780820-13780993(+) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2545.1.S1_x_at	A	A1TS	POPTR_0013s13220	POPTR_0013s13220 (11)	scaffold_13:13780820-13780993(+) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2547.1.S1_s_at	A	A2TS	POPTR_0004s16450	POPTR_0009s12150 (9)//POPTR_0004s16450 (9)	scaffold_4:16910224-16910261(-) (9)//scaffold_9:9959297-9959334(-) (9)	NA	P46301	40S ribosomal protein S25	AT4G39200.1	Ribosomal protein S25 family protein 	LOC_Os08g44480.1	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2548.1.S1_s_at	A	A1TS	POPTR_0004s08540	POPTR_0004s08540 (11)	scaffold_4:7111843-7112176(-) (11)	NA	Q9JJW6	RNA and export factor-binding protein 2	AT5G37720.2	ALWAYS EARLY 4 	LOC_Os08g33120.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g087650.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.2549.1.S1_at	A	A1TS	POPTR_0009s02450	POPTR_0009s02450 (11)	scaffold_9:3220867-3221600(+) (11)	NA	P19950	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os02g06700.2	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2550.1.S1_at	A	A1TS	POPTR_0002s04790	POPTR_0002s04790 (11)	scaffold_2:3024300-3024595(+) (11)	NA	P23525	"37 kDa inner envelope membrane protein, chloroplastic"	AT3G63410.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g08200.1	"methyltransferase domain containing protein, putative, expressed"	Medtr1g083540.1	"37 kDa inner envelope membrane protein, chloroplast precursor, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.2551.1.S1_at	A	A1TS	POPTR_0010s20010	POPTR_0010s20010 (10)	scaffold_10:17758698-17759219(+) (11)	NA	P58684	Probable signal peptidase complex subunit 2	AT2G39960.1	Microsomal signal peptidase 25 kDa subunit (SPC25) 	LOC_Os04g36859.1	"signal peptidase complex subunit 2, putative, expressed"	Medtr5g089240.1	Microsomal signal peptidase 25 kDa subunit 	GO:0044260|cellular macromolecule metabolic process||GO:0006508|proteolysis||GO:0006465|signal peptide processing	GO:0008233|peptidase activity	GO:0005787|signal peptidase complex||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
Ptp.2552.1.S1_s_at	A	A1TS	POPTR_0012s07060	POPTR_0012s07060 (11)	scaffold_12:7741885-7742375(+) (11)	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g51080.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2555.1.A1_at	A	A1TS	POPTR_0001s12900	POPTR_0001s12900 (11)	scaffold_1:10011746-10011931(+) (11)	NA	NA	NA	AT5G64680.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g15520.1	expressed protein	Medtr8g012770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2556.1.S1_s_at	A	A1TS	POPTR_0017s05860	POPTR_0017s05860 (11)	scaffold_17:4548925-4549265(-) (11)	NA	O22845	Calmodulin-like protein 5	AT2G43290.1	Calcium-binding EF-hand family protein 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr2g118470.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2557.1.S1_at	A	A1TS	POPTR_0016s05320	POPTR_0016s05320 (11)	scaffold_16:3279072-3279889(+) (11)	NA	Q54D08	Protein LST8 homolog	AT3G18140.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g47780.1	"WD repeat-containing protein, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2558.1.S1_at	A	A1TS	POPTR_0008s00560	POPTR_0008s00560 (11)	scaffold_8:236636-237530(+) (11)	NA	Q9SM09	V-type proton ATPase catalytic subunit A	AT1G78900.2	vacuolar ATP synthase subunit A 	LOC_Os06g45120.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.256.1.S1_s_at	A	A1TS	POPTR_0014s09340	POPTR_0014s09340 (11)	scaffold_14:6945244-6947716(+) (11)	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2560.1.S1_s_at	A	A1TS	POPTR_0013s06360	POPTR_0013s06360 (11)	scaffold_13:4913161-4913935(+) (11)	NA	Q4PGW7	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr7g103920.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2560.3.S1_s_at	A	A1TS	POPTR_0013s06360	POPTR_0013s06360 (11)	scaffold_13:4914153-4914227(+) (11)	NA	Q4PGW7	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr7g103920.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2561.1.A1_s_at	A	A1TS	POPTR_0005s24120	POPTR_0005s24120 (11)	scaffold_5:22755608-22755647(-) (11)	NA	P31674	40S ribosomal protein S15	AT5G09500.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2562.1.S1_s_at	A	A1TS	POPTR_0006s23070	POPTR_0006s23070 (11)	scaffold_6:21897153-21899174(+) (11)	NA	Q9M5L0	60S ribosomal protein L35	AT5G02610.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2563.2.S1_at	A	A1MS	POPTR_0006s26610	POPTR_0006s26610 (10)	scaffold_6:24777682-24777916(+) (10)	NA	P48502	Cytochrome b-c1 complex subunit 7	AT5G25450.1	"Cytochrome bd ubiquinol oxidase, 14kDa subunit "	LOC_Os03g59220.1	"cytochrome b-c1 complex subunit 7, putative, expressed"	Medtr1g013430.1	"Cytochrome bd ubiquinol oxidase, 14 kDa subunit "	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
Ptp.2565.1.A1_at	A	A1TS	POPTR_0006s07780	POPTR_0006s07780 (11)	scaffold_6:5698273-5699626(+) (11)	NA	B9HBA8	"Biotin carboxylase 1, chloroplastic"	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
Ptp.2566.1.S1_at	A	A1TS	POPTR_0015s04250	POPTR_0015s04250 (11)	scaffold_15:4309370-4310447(+) (11)	NA	O24076	Guanine nucleotide-binding protein subunit beta-like protein	AT1G48630.1	receptor for activated C kinase 1B 	LOC_Os01g49290.1	"WD repeat-containing protein, putative, expressed"	Medtr4g155480.1	"Guanine nucleotide-binding protein subunit beta-like protein, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2567.1.S1_a_at	A	A1TS	POPTR_0004s21380	POPTR_0004s21380 (11)	scaffold_4:20538517-20539051(-) (11)	NA	NA	NA	AT5G22460.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g05600.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2567.1.S1_s_at	A	A1TS	POPTR_0004s21380	POPTR_0004s21380 (11)	scaffold_4:20538543-20539093(-) (11)	NA	NA	NA	AT5G22460.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g05600.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2568.1.S1_s_at	A	A1TS	POPTR_0002s14740	POPTR_0002s14740 (11)	scaffold_2:10946874-10947221(+) (11)	NA	P05466	"3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic"	AT2G45300.1	"RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta "	LOC_Os06g04280.1	"3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed"	Medtr4g025530.1	3-phosphoshikimate 1-carboxyvinyltransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
Ptp.257.1.S1_s_at	A	A1TS	POPTR_0001s25780	POPTR_0001s25780 (11)	scaffold_1:24808713-24808999(-) (11)	NA	Q84T03	DEAD-box ATP-dependent RNA helicase 27	AT3G18600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g58810.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g115790.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.2570.1.S1_at	A	A1TS	POPTR_0008s15290	POPTR_0008s15290 (11)	scaffold_8:10204043-10204389(+) (11)	NA	Q9FDW0	Protein FRIGIDA	AT3G22440.1	FRIGIDA-like protein 	LOC_Os07g07680.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2572.1.S1_at	A	A1TS	POPTR_0017s13180	POPTR_0017s13180 (11)	scaffold_17:13359286-13359615(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2573.1.S1_at	A	A1TS	POPTR_0015s05010	POPTR_0015s05010 (11)	scaffold_15:5247638-5248176(-) (11)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2574.1.S1_at	A	A1TS	POPTR_0009s06180	POPTR_0009s06180 (11)	scaffold_9:6038904-6039423(-) (11)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os04g28180.1	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	GO:0005622|intracellular
Ptp.2577.1.S1_s_at	A	A1TS	POPTR_0003s11340	POPTR_0003s11340 (11)	scaffold_3:12177633-12179276(+) (11)	NA	NA	NA	AT1G62790.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g47200.2	"LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106370.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2578.1.S1_s_at	A	A1TS	POPTR_0002s10580	POPTR_0002s10580 (11)	scaffold_2:7673367-7673936(+) (11)	NA	Q9FUY6	MADS-box protein JOINTLESS	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os02g52340.1	"OsMADS22 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2581.1.S1_at	A	A1TS	POPTR_0008s06720	POPTR_0008s06720 (11)	scaffold_8:4016301-4017947(-) (11)	NA	Q9S7W1	"Chlorophyll a-b binding protein CP29.3, chloroplastic"	AT2G40100.1	light harvesting complex photosystem II 	LOC_Os07g37240.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr3g093420.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2582.1.S1_s_at	A	A1TS	POPTR_0005s19160	POPTR_0005s19160 (11)	scaffold_5:17772923-17773272(+) (11)	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G38100.1	unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g11400.1	expressed protein	Medtr5g033900.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2583.1.S1_at	A	A1TS	POPTR_0007s02460	POPTR_0007s02460 (11)	scaffold_7:1457911-1457951(-) (11)	NA	Q8H159	Polyubiquitin 10	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.5	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2585.1.S1_at	A	A1TS	POPTR_0016s03230	POPTR_0016s03230 (11)	scaffold_16:1652494-1653167(+) (11)	NA	Q15032	R3H domain-containing protein 1	AT3G56680.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr7g105960.1	Single-stranded nucleic acid binding R3H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2586.1.S1_s_at	A	A1TS	POPTR_0006s24570	POPTR_0006s24570 (11)	scaffold_6:23165723-23166379(+) (11)	NA	O49954	"Glycine dehydrogenase [decarboxylating], mitochondrial"	AT4G33010.1	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2588.1.S1_s_at	A	A1TS	POPTR_0001s16400	POPTR_0001s16400 (11)	scaffold_1:13187817-13187862(+) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.2	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.2588.2.S1_at	A	A1MS	POPTR_0001s16400	POPTR_0001s16400 (11)	scaffold_1:13186061-13186220(+) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.2	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.259.1.S1_s_at	A	A1TS	POPTR_0003s07880	POPTR_0003s07880 (11)	scaffold_3:9391014-9392121(-) (11)	NA	Q8YXQ7	Carbamoyl-phosphate synthase small chain	AT3G27740.1	carbamoyl phosphate synthetase A 	LOC_Os02g47850.2	"class I glutamine amidotransferase, putative, expressed"	Medtr8g109600.1	"Carbamoyl-phosphate synthase, small subunit; Glutamine amidotransferase, class I, active site "	GO:0006807|nitrogen compound metabolic process	GO:0004086|carbamoyl-phosphate synthase activity	NA
Ptp.2590.1.A1_at	A	A1TS	POPTR_0006s10320	POPTR_0006s10320 (11)	scaffold_6:7734596-7734648(+) (11)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.2591.1.S1_at	A	A1TS	POPTR_0004s14780	POPTR_0004s14780 (11)	scaffold_4:15417259-15417730(-) (11)	NA	Q06GK0	"30S ribosomal protein S7, chloroplastic"	ATCG00900.1	Ribosomal protein S7p/S5e family protein 	LOC_Os10g21372.1	"chloroplast 30S ribosomal protein S7, putative"	Medtr3g043700.1	Ribosomal protein S7 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2592.2.S1_x_at	A	A1TS	POPTR_0005s25420	POPTR_0005s25420 (11)	scaffold_5:23693293-23694270(-) (11)	NA	Q07090	Thioredoxin H-type 2	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr1g028610.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2592.3.S1_x_at	A	A1TS	POPTR_0005s25420	POPTR_0005s25420 (11)	scaffold_5:23693265-23694262(-) (11)	NA	Q07090	Thioredoxin H-type 2	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr1g028610.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2593.1.S1_s_at	A	A1TS	POPTR_0001s10060	POPTR_0001s10060 (11)	scaffold_1:7787113-7787620(-) (11)	NA	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
Ptp.2594.1.S1_at	A	A1TS	POPTR_0012s09510	POPTR_0012s09510 (11)	scaffold_12:10512566-10512793(+) (11)	NA	Q93Y35	Probable 26S proteasome non-ATPase regulatory subunit 6	AT4G24820.2	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os04g40850.1	"26S proteasome non-ATPase regulatory subunit 6, putative, expressed"	Medtr8g109840.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2595.1.S1_s_at	A	A1TS	POPTR_0003s01090	POPTR_0003s01090 (11)	scaffold_3:955536-955906(-) (11)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.2596.1.S1_at	A	A1TS	POPTR_0006s26270	POPTR_0006s26270 (11)	scaffold_6:24522472-24524070(-) (11)	NA	P82715	"PsbP domain-containing protein 5, chloroplastic"	AT5G11450.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os01g43070.1	"psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed"	Medtr3g136110.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2597.1.S1_at	A	A1TS	POPTR_0002s09880	POPTR_0002s09880 (11)	scaffold_2:7095943-7096414(+) (11)	NA	NA	NA	AT4G08950.1	Phosphate-responsive 1 family protein 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g144900.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2598.1.S1_at	A	A1TS	POPTR_0015s04280	POPTR_0015s04280 (11)	scaffold_15:4333505-4334114(-) (11)	NA	Q9LV33	Beta-glucosidase 44	AT3G18080.1	B-S glucosidase 44 	LOC_Os01g32364.1	"Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2599.1.S1_at	A	A1TS	POPTR_0002s02340	POPTR_0002s02340 (11)	scaffold_2:1324748-1324814(+) (11)	NA	P18025	Tubulin beta-1 chain	AT1G20010.1	tubulin beta-5 chain 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2599.1.S1_s_at	A	A1TS	POPTR_0002s02340	POPTR_0002s02340 (11)	scaffold_2:1324888-1325308(+) (11)	NA	P18025	Tubulin beta-1 chain	AT1G20010.1	tubulin beta-5 chain 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.260.1.S1_at	A	A1TS	POPTR_0010s10480	POPTR_0010s10480 (10)	scaffold_10:10974629-10974687(-) (10)	NA	P49756	RNA-binding protein 25	AT1G60200.1	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 	LOC_Os08g32100.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr5g035770.1	"Splicing factor PWI; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	GO:0003676|nucleic acid binding	NA
Ptp.2600.1.S1_s_at	A	A1TS	POPTR_0011s13490	POPTR_0011s13490 (11)	scaffold_11:16238447-16238564(+) (11)	NA	Q9C681	Probable histone H2A.1	AT1G51060.1	histone H2A 10 	LOC_Os08g33100.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr2g096630.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2601.1.S1_a_at	A	A1TS	POPTR_0009s12110	POPTR_0009s12110 (11)	scaffold_9:9932377-9932712(-) (11)	NA	O48671	Protein RER1B	AT2G21600.1	endoplasmatic reticulum retrieval protein 1B 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
Ptp.2602.1.S1_x_at	A	A1TS	POPTR_0001s40300	POPTR_0001s40300 (11)	scaffold_1:39656826-39658733(+) (11)	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2604.1.S1_x_at	A	A1TS	POPTR_0008s05480	POPTR_0008s05480 (11)	scaffold_8:3171328-3171686(-) (11)	NA	P27322	Heat shock cognate 70 kDa protein 2	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2605.1.A1_at	A	A1TS	POPTR_0001s14280	POPTR_0001s14280 (11)	scaffold_1:11233898-11236024(+) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os02g57260.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2608.1.S1_s_at	A	A1TS	POPTR_0006s07720	POPTR_0006s07720 (11)	scaffold_6:5627975-5628388(+) (11)	NA	Q9ASY8	Mitochondrial import receptor subunit TOM7-1	AT5G41685.1	"Mitochondrial outer membrane translocase complex, subunit Tom7 "	LOC_Os05g50654.1	"mitochondrial import receptor subunit TOM7-1, putative, expressed"	Medtr3g076590.1	TOM7 	GO:0006886|intracellular protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0005741|mitochondrial outer membrane
Ptp.2609.1.S1_s_at	A	A1TS	POPTR_0006s23870	POPTR_0006s23870 (11)	scaffold_6:22596460-22596753(+) (11)	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2609.2.S1_at	A	A1TS	POPTR_0018s08510	POPTR_0018s08510 (11)	scaffold_18:9466407-9466480(-) (11)	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2609.2.S1_x_at	A	A1TS	POPTR_0018s08510	POPTR_0018s08510 (11)	scaffold_18:9466407-9466534(-) (11)	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.261.1.S1_s_at	A	A1TS	POPTR_0001s37150	POPTR_0001s37150 (11)	scaffold_1:35980652-35981084(-) (11)	NA	Q9LDH0	"Beta-(1,2)-xylosyltransferase"	AT5G55500.1	"beta-1,2-xylosyltransferase "	LOC_Os08g39380.1	"beta 1,2-xylosyltransferase, putative, expressed"	Medtr3g076770.1	"beta 1,2 xylosyltransferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2610.3.A1_a_at	A	A1TS	POPTR_0005s20830	POPTR_0005s20830 (11)	scaffold_5:19971770-19972119(-) (11)	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2610.3.A1_s_at	A	A1TS	POPTR_0005s20830	POPTR_0005s20830 (11)	scaffold_5:19969431-19969476(-) (11)	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2611.2.A1_a_at	A	A1TS	POPTR_0010s08670	POPTR_0010s08670 (11)	scaffold_10:9563486-9564129(+) (11)	NA	NA	NA	AT3G23090.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2613.1.A1_x_at	A	A1TS	POPTR_0018s06650	POPTR_0018s06650 (11)	scaffold_18:6696249-6698029(+) (11)	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr6g093440.1	Ribosomal protein L31e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2615.1.S1_s_at	A	A1TS	POPTR_0005s07770	POPTR_0005s07770 (11)	scaffold_5:5314033-5314640(-) (11)	NA	Q94FB9	ABC transporter D family member 1	AT4G39850.1	peroxisomal ABC transporter 1 	LOC_Os01g73530.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g101500.1	Peroxysomal long chain fatty acyl transporter 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.2617.1.S1_at	A	A1TS	POPTR_0003s20310	POPTR_0003s20310 (10)	scaffold_3:18817568-18818053(-) (10)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr4g118330.1	RNA-binding region RNP-1 (RNA recognition motif); U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2618.1.S1_at	A	A1TS	POPTR_0006s04330	POPTR_0006s04330 (10)	scaffold_6:2949842-2950166(-) (10)	NA	P54453	Uncharacterized protein yqeH	AT3G57180.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g30380.1	"GTP binding protein, putative, expressed"	Medtr7g107700.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.262.1.S1_a_at	A	A2TS	POPTR_0001s02600	POPTR_0003s08950 (11)//POPTR_0001s02600 (11)	scaffold_1:2059422-2059473(-) (11)//scaffold_3:10241109-10241160(+) (11)	NA	NA	NA	AT4G17950.1	AT hook motif DNA-binding family protein 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr8g102740.1	Protein of unknown function DUF296 	NA	GO:0003677|DNA binding	NA
Ptp.262.1.S1_at	A	A1TS	POPTR_0003s08950	POPTR_0003s08950 (10)	scaffold_3:10244677-10245264(+) (10)	NA	NA	NA	AT4G17950.1	AT hook motif DNA-binding family protein 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr8g102740.1	Protein of unknown function DUF296 	NA	GO:0003677|DNA binding	NA
Ptp.2620.1.S1_at	A	A1TS	POPTR_0007s01830	POPTR_0007s01830 (11)	scaffold_7:1052348-1052713(-) (11)	NA	Q6GN58	Protein YIF1B-A	AT1G30890.2	Integral membrane HRF1 family protein 	LOC_Os04g08320.1	"YIF1B, putative, expressed"	Medtr7g020670.1	Hrf1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2621.1.A1_s_at	A	A1TS	POPTR_0008s19020	POPTR_0008s19020 (11)	scaffold_8:13006439-13006896(-) (11)	NA	NA	NA	AT1G67910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). 	NA	NA	Medtr8g081780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2622.1.S1_at	A	A1TS	POPTR_0006s10490	POPTR_0006s10490 (11)	scaffold_6:7829803-7830163(-) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT3G08890.2	"Protein of unknown function, DUF538 "	LOC_Os05g27950.1	"DUF538 domain containing protein, putative, expressed"	Medtr7g076080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2623.1.S1_a_at	A	A1MS	POPTR_0011s17150	POPTR_0011s17150 (11)	scaffold_11:18750715-18750782(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT5G56170.1	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 	LOC_Os02g48980.1	"GPI-anchored protein, putative, expressed"	Medtr3g016820.1	"GPI-anchored protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2623.2.S1_a_at	A	A1MS	POPTR_0011s17150	POPTR_0011s17150 (11)	scaffold_11:18750716-18750894(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT5G56170.1	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 	LOC_Os02g48980.1	"GPI-anchored protein, putative, expressed"	Medtr3g016820.1	"GPI-anchored protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2627.1.A1_s_at	A	A1TS	POPTR_0013s12970	POPTR_0013s12970 (11)	scaffold_13:13567517-13567746(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2627.1.A1_x_at	A	A1TS	POPTR_0013s12970	POPTR_0013s12970 (11)	scaffold_13:13567614-13567906(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2628.1.A1_at	A	A1TS	POPTR_0001s36160	POPTR_0001s36160 (11)	scaffold_1:34671782-34672811(+) (11)	NA	Q9FJI5	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
Ptp.2628.1.A1_x_at	A	A1TS	POPTR_0001s36160	POPTR_0001s36160 (11)	scaffold_1:34671439-34672811(+) (11)	NA	Q9FJI5	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
Ptp.2629.1.S1_s_at	A	A1TS	POPTR_0005s23310	POPTR_0005s23310 (11)	scaffold_5:22129149-22129822(-) (11)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.263.2.A1_at	A	A1TS	POPTR_0015s12490	POPTR_0015s12490 (11)	scaffold_15:12718538-12719058(-) (11)	NA	Q6PGS5	Transmembrane protein 56-B	AT1G31300.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os03g46410.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
Ptp.2630.1.S1_s_at	A	A1TS	POPTR_0006s06770	POPTR_0006s06770 (11)	scaffold_6:4902171-4902813(-) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.2631.1.S1_at	A	A1TS	POPTR_0012s13230	POPTR_0012s13230 (10)	scaffold_12:13477965-13478824(+) (10)	NA	P93788	Remorin	AT5G23750.2	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2633.1.S1_at	A	A1TS	POPTR_0004s01320	POPTR_0004s01320 (11)	scaffold_4:713253-715307(-) (11)	NA	Q39366	Putative lactoylglutathione lyase	AT1G11840.6	glyoxalase I homolog 	LOC_Os08g09250.2	"glyoxalase family protein, putative, expressed"	Medtr8g146950.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2635.1.S1_s_at	A	A1TS	POPTR_0002s26100	POPTR_0002s26100 (11)	scaffold_2:23068254-23069360(-) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT4G28600.1	no pollen germination related 2 	LOC_Os10g33290.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g090090.2	"NPGR2 ; calmodulin binding ta, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2636.1.S1_at	A	A1TS	POPTR_0013s09090	POPTR_0013s09090 (10)	scaffold_13:8647682-8648234(+) (10)	NA	Q84WF5	Probable VAMP-like protein At1g33475	AT4G10170.2	SNARE-like superfamily protein 	LOC_Os08g01880.1	"synaptobrevin-related family protein, putative, expressed"	Medtr3g016650.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2637.1.S1_at	A	A1TS	POPTR_0006s24770	POPTR_0006s24770 (9)	scaffold_6:23325006-23326946(+) (11)	NA	P42027	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial"	AT5G11770.1	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial "	LOC_Os01g52214.1	"ubiquinone oxidoreductase, putative, expressed"	Medtr3g140060.1	"NADH dehydrogenase (ubiquinone), 20 kDa subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2637.1.S1_s_at	A	A1TS	POPTR_0006s24770	POPTR_0006s24770 (11)	scaffold_6:23326821-23327319(+) (11)	NA	P42027	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial"	AT5G11770.1	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial "	LOC_Os01g52214.1	"ubiquinone oxidoreductase, putative, expressed"	Medtr3g140060.1	"NADH dehydrogenase (ubiquinone), 20 kDa subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2638.1.A1_at	A	A1TS	POPTR_0013s14170	POPTR_0013s14170 (11)	scaffold_13:14466058-14466325(-) (11)	NA	Q8GZA8	Protein ULTRAPETALA 1	AT4G28190.1	"Developmental regulator, ULTRAPETALA "	LOC_Os01g57240.1	expressed protein	AC229695_17.1	"Protein ULTRAPETALA 2, putative AC229695.5 69003-71368 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2639.1.S1_at	A	A1TS	POPTR_0006s05090	POPTR_0006s05090 (11)	scaffold_6:3533574-3534971(-) (11)	NA	Q9SCM3	40S ribosomal protein S2-4	AT3G57490.1	Ribosomal protein S5 family protein 	LOC_Os03g59310.1	"ribosomal protein, putative, expressed"	Medtr4g157070.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2640.1.A1_at	A	A1TS	POPTR_0017s14060	POPTR_0017s14060 (11)	scaffold_17:14214488-14215037(-) (11)	NA	Q6DD45	Zinc finger CCHC domain-containing protein 8	AT5G38600.1	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein 	LOC_Os06g30020.1	"PSP domain containing protein, expressed"	AC233657_33.1	"Zinc finger, CCHC-type; PSP, proline-rich AC233657.1 169292-178036 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2641.1.S1_s_at	A	A1TS	POPTR_0006s14340	POPTR_0006s14340 (11)	scaffold_6:11664711-11665110(-) (11)	NA	O65351	Subtilisin-like protease	AT2G05920.1	Subtilase family protein 	LOC_Os09g26920.1	"OsSub57 - Putative Subtilisin homologue, expressed"	Medtr2g049250.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.2643.1.S1_s_at	A	A1TS	POPTR_0003s20840	POPTR_0003s20840 (11)	scaffold_3:19233149-19233344(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g06240.2	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2644.1.S1_s_at	A	A1TS	POPTR_0003s04200	POPTR_0003s04200 (11)	scaffold_3:4918991-4920051(-) (11)	NA	Q84LG4	Coatomer subunit zeta-2	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.2645.1.S1_s_at	A	A1TS	POPTR_0014s09190	POPTR_0014s09190 (10)	scaffold_14:6825841-6826294(-) (10)	NA	Q9SUP6	Probable WRKY transcription factor 53	AT4G23810.1	WRKY family transcription factor 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.2646.1.S1_x_at	A	A1TS	POPTR_0011s17170	POPTR_0011s17170 (11)	scaffold_11:18759120-18759666(+) (11)	NA	Q9S7N7	"Photosystem I reaction center subunit V, chloroplastic"	AT1G55670.1	photosystem I subunit G 	LOC_Os09g30340.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	Medtr3g016960.1	Photosystem I psaG/psaK protein 	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
Ptp.2647.2.S1_a_at	A	A1TS	POPTR_0014s08780	POPTR_0014s08780 (11)	scaffold_14:6507442-6507842(+) (11)	NA	NA	NA	AT2G46220.1	Uncharacterized conserved protein (DUF2358) 	LOC_Os01g12200.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2648.1.S1_s_at	A	A1TS	POPTR_0004s17400	POPTR_0004s17400 (11)	scaffold_4:17608366-17608971(-) (11)	NA	Q0WLC6	"Pentatricopeptide repeat-containing protein At4g34830, chloroplastic"	AT4G34830.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g10170.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g098380.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.265.1.S1_s_at	A	A1TS	POPTR_0014s03510	POPTR_0014s03510 (11)	scaffold_14:2815126-2815610(-) (11)	NA	Q8GZD4	Nucleobase-ascorbate transporter 3	AT2G26510.1	Xanthine/uracil permease family protein 	LOC_Os12g39420.9	"nucleobase-ascorbate transporter, putative, expressed"	Medtr1g025100.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2651.1.A1_at	A	A1TS	POPTR_0007s06500	POPTR_0007s06500 (11)	scaffold_7:4864108-4864903(-) (11)	NA	NA	NA	AT5G10010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). 	LOC_Os04g56590.1	"ATP/GTP binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2651.2.A1_at	A	A1TS	POPTR_0007s06500	POPTR_0007s06500 (10)	scaffold_7:4863203-4863622(-) (11)	NA	NA	NA	AT5G10010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). 	LOC_Os04g56590.1	"ATP/GTP binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2653.1.S1_a_at	A	A1MS	POPTR_0003s19140	POPTR_0003s19140 (11)	scaffold_3:17936179-17936418(-) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.2653.3.S1_s_at	A	A1TS	POPTR_0003s19140	POPTR_0003s19140 (11)	scaffold_3:17934525-17936440(-) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.2654.1.S1_s_at	A	A1TS	POPTR_0017s12240	POPTR_0017s12240 (11)	scaffold_17:12475200-12476206(+) (11)	NA	P55217	"Cystathionine gamma-synthase, chloroplastic"	AT3G01120.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g25940.4	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
Ptp.2655.1.S1_at	A	A1TS	POPTR_0001s47670	POPTR_0001s47670 (9)	scaffold_1:47815102-47815467(-) (9)	NA	Q9FG77	Probable WRKY transcription factor 2	AT5G56270.1	WRKY DNA-binding protein 2 	LOC_Os08g38990.4	"OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.2656.1.S1_at	A	A1TS	POPTR_0001s28710	POPTR_0001s28710 (11)	scaffold_1:27484344-27484793(-) (11)	NA	C0LGU7	Probable LRR receptor-like serine/threonine-protein kinase At5g45840	AT5G45840.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr3g094640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2657.1.S1_s_at	A	A1TS	POPTR_0006s14680	POPTR_0006s14680 (11)	scaffold_6:12053262-12054258(+) (11)	NA	P48980	Beta-galactosidase	AT3G13750.1	beta galactosidase 1 	LOC_Os01g39830.1	"beta-galactosidase, putative, expressed"	Medtr2g121320.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2659.1.A1_s_at	A	A1TS	POPTR_0016s07600	POPTR_0016s07600 (11)	scaffold_16:5464002-5464299(-) (11)	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os11g05650.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2660.1.A1_at	A	A1TS	POPTR_0005s09610	POPTR_0005s09610 (11)	scaffold_5:6728079-6728733(+) (11)	NA	P14656	Glutamine synthetase cytosolic isozyme 1-1	AT1G66200.1	glutamine synthase clone F11 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2661.1.S1_at	A	A1TS	POPTR_0012s00440	POPTR_0012s00440 (9)	scaffold_12:147920-148297(-) (9)	NA	NA	NA	AT3G49550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24610.1); Has 55 Blast hits to 55 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g36550.3	"CRP3 - Cysteine-rich family protein precursor, expressed"	Medtr5g077350.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2662.1.S1_s_at	A	A1TS	POPTR_0002s19480	POPTR_0002s19480 (11)	scaffold_2:15455024-15455982(-) (11)	NA	Q6GQT9	Nodal modulator 1	AT3G62360.1	Carbohydrate-binding-like fold 	LOC_Os01g19470.1	"nodal modulator 1 precursor, putative, expressed"	Medtr7g133160.1	Carboxypeptidase regulatory region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2664.1.A1_at	A	A1TS	POPTR_0001s29510	POPTR_0001s29510 (11)	scaffold_1:28168119-28168364(+) (11)	NA	Q9M2Y6	Uncharacterized protein At3g49720	AT3G49720.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g05070.1	expressed protein	Medtr2g010600.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.2667.1.S1_s_at	A	A1TS	POPTR_0017s07700	POPTR_0017s07700 (11)	scaffold_17:5981780-5982027(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2668.1.A1_at	A	A1TS	POPTR_0010s24560	POPTR_0010s24560 (11)	scaffold_10:20719842-20720266(+) (11)	NA	P27788	"Ferredoxin-3, chloroplastic"	AT2G27510.1	ferredoxin 3 	LOC_Os03g61960.2	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr2g107770.1	"Ferredoxin [2Fe-2S], plant "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.2672.1.A1_at	A	A1TS	POPTR_0008s00800	POPTR_0008s00800 (11)	scaffold_8:357201-358237(+) (11)	NA	Q9C512	"Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1"	AT1G51590.1	alpha-mannosidase 1 	LOC_Os04g51690.1	"glycosyl hydrolase family 47 domain contain protein, expressed"	Medtr8g129800.1	"Glycoside hydrolase, family 47 "	NA	"GO:0004571|""mannosyl-oligosaccharide 1,2-alpha-mannosidase activity""||GO:0005509|calcium ion binding"	GO:0016020|membrane
Ptp.2675.1.S1_s_at	A	A1TS	POPTR_0010s14710	POPTR_0010s14710 (11)	scaffold_10:14225836-14225995(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G13635.2	DNA glycosylase superfamily protein 	LOC_Os08g38170.1	"methyladenine glycosylase, putative, expressed"	Medtr8g077310.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
Ptp.2676.1.S1_at	A	A1TS	POPTR_0016s08890	POPTR_0016s08890 (11)	scaffold_16:6690388-6690462(-) (11)	NA	Q7XLX6	DNA-binding protein S1FA2	AT2G37120.1	S1FA-like DNA-binding protein 	LOC_Os04g33440.2	"DNA-binding protein S1FA, putative, expressed"	Medtr7g121080.1	DNA binding protein S1FA 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.2677.1.S1_at	A	A1TS	POPTR_0002s05020	POPTR_0002s05020 (10)	scaffold_2:3211874-3212236(-) (10)	NA	A2ZMH2	Serine/threonine-protein kinase Nek2	AT3G04810.2	NIMA-related kinase 2 	LOC_Os12g41180.1	"LSTK-1-like kinase, putative, expressed"	Medtr1g083910.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2678.1.S1_s_at	A	A2TS	POPTR_0012s09510	POPTR_0012s09510 (11)//POPTR_0015s10280 (11)	scaffold_12:10511940-10512475(+) (11)//scaffold_15:11245151-11245768(+) (11)	NA	Q93Y35	Probable 26S proteasome non-ATPase regulatory subunit 6	AT4G24820.2	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os04g40850.1	"26S proteasome non-ATPase regulatory subunit 6, putative, expressed"	Medtr8g109840.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2679.1.S1_at	A	A1TS	POPTR_0010s09350	POPTR_0010s09350 (11)	scaffold_10:10206991-10207347(-) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2679.1.S1_s_at	A	A1TS	POPTR_0010s09350	POPTR_0010s09350 (11)	scaffold_10:10207181-10207421(-) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2681.1.S1_s_at	A	A1TS	POPTR_0010s15720	POPTR_0010s15720 (11)	scaffold_10:14850124-14850594(+) (11)	NA	Q9LSN7	Transcription factor bHLH147	AT3G17100.2	sequence-specific DNA binding transcription factors 	LOC_Os03g19780.1	expressed protein	Medtr8g137080.1	transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2683.1.S1_a_at	A	A1TS	POPTR_0013s13680	POPTR_0013s13680 (9)	scaffold_13:14102077-14102319(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2686.1.S1_s_at	A	A1TS	POPTR_0004s03410	POPTR_0004s03410 (11)	scaffold_4:2347738-2348162(-) (11)	POPTR_0011s04220 (6)	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G05020.1	NAD(P)H dehydrogenase B2 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.2687.1.S1_at	A	A1TS	POPTR_0001s17500	POPTR_0001s17500 (9)	scaffold_1:14291526-14291879(+) (9)	NA	Q99685	Monoglyceride lipase	AT1G52760.1	lysophospholipase 2 	LOC_Os02g11720.1	"lipase, putative, expressed"	Medtr8g129890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2689.1.S1_at	A	A1MS	POPTR_0001s25210	POPTR_0001s25210 (9)	scaffold_1:24398450-24398963(-) (9)	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT1G07420.1	sterol 4-alpha-methyl-oxidase 2-1 	LOC_Os07g01150.3	"fatty acid hydroxylase, putative, expressed"	Medtr5g036470.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
Ptp.2693.1.A1_at	A	A1TS	POPTR_0005s06390	POPTR_0005s06390 (9)	scaffold_5:4260015-4260563(+) (9)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G20015.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58070.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2694.2.S1_s_at	A	A1TS	POPTR_0010s18300	POPTR_0010s18300 (11)	scaffold_10:16595565-16596206(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT1G79270.1	evolutionarily conserved C-terminal region 8 	LOC_Os01g48790.1	"YT521-B-like family domain containing protein, expressed"	Medtr2g085380.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2696.1.S1_at	A	A1TS	POPTR_0010s08380	POPTR_0010s08380 (9)	scaffold_10:9318413-9318554(-) (9)	NA	Q8H1S4	1-aminocyclopropane-1-carboxylate oxidase homolog 4	AT1G06650.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.2699.1.A1_s_at	A	A1TS	POPTR_0006s06180	POPTR_0006s06180 (11)	scaffold_6:4392880-4393071(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.2700.1.S1_at	A	A1TS	POPTR_0019s08570	POPTR_0019s08570 (11)	scaffold_19:10077903-10078038(-) (11)	NA	O22874	Expansin-A8	AT2G40610.1	expansin A8 	LOC_Os01g60770.1	"expansin precursor, putative, expressed"	Medtr5g083140.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2701.1.S1_at	A	A1TS	POPTR_0010s19850	POPTR_0010s19850 (11)	scaffold_10:17641541-17642207(-) (11)	NA	Q9FFK1	Syntaxin-31	AT5G05760.1	syntaxin of plants 31 	LOC_Os01g08400.1	"syntaxin, putative, expressed"	Medtr5g101030.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
Ptp.2702.1.A1_x_at	A	A1TS	POPTR_0017s00400	POPTR_0017s00400 (11)	scaffold_17:125718-126160(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2703.2.S1_at	A	A1MS	POPTR_0002s13940	POPTR_0002s13940 (11)	scaffold_2:10339931-10340407(+) (11)	NA	O23676	Protein mago nashi homolog	AT1G02140.1	mago nashi family protein 	LOC_Os12g18880.1	"mago nashi, putative, expressed"	Medtr3g163680.1	Mago nashi protein 	NA	NA	GO:0005634|nucleus
Ptp.2706.1.S1_s_at	A	A1TS	POPTR_0015s14780	POPTR_0015s14780 (11)	scaffold_15:14254327-14254884(-) (11)	NA	Q8VXX5	Monocopper oxidase-like protein SKS1	AT4G25240.1	SKU5 similar 1 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr3g010000.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2708.1.S1_at	A	A1TS	POPTR_0008s09390	POPTR_0008s09390 (10)	scaffold_8:5817540-5818044(+) (10)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT3G29360.2	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25700.3	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr5g046790.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.2709.1.A1_at	A	A1TS	POPTR_0002s19110	POPTR_0002s19110 (9)	scaffold_2:15036354-15036767(+) (9)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g133540.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.271.1.A1_at	A	A1TS	POPTR_0003s05060	POPTR_0003s05060 (11)	scaffold_3:6249431-6249878(-) (11)	NA	Q0WVL7	Golgin candidate 5	AT1G79830.3	golgin candidate 5 	LOC_Os05g48620.1	"tRNA-binding arm, putative, expressed"	Medtr2g122720.1	"tRNA-binding arm; t-snare, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2711.1.S1_at	A	A1TS	POPTR_0004s24400	POPTR_0004s24400 (11)	scaffold_4:23079556-23079998(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
Ptp.2711.2.S1_a_at	A	A1TS	POPTR_0003s03960	POPTR_0003s03960 (11)	scaffold_3:4554091-4554857(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
Ptp.2711.2.S1_s_at	A	A1TS	POPTR_0003s03960	POPTR_0003s03960 (11)	scaffold_3:4554014-4554417(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
Ptp.2714.1.S1_at	A	A1TS	POPTR_0010s26100	POPTR_0010s26100 (9)	scaffold_10:21454560-21455118(+) (9)	NA	Q9M1H3	ABC transporter F family member 4	AT3G54540.1	general control non-repressible 4 	LOC_Os03g32630.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g089230.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.2716.1.S1_at	A	A1TS	POPTR_0015s09000	POPTR_0015s09000 (11)	scaffold_15:10329980-10330944(-) (11)	NA	Q8L8T2	Glutaredoxin-C1	AT5G63030.1	Thioredoxin superfamily protein 	LOC_Os02g40500.1	"OsGrx_C2.1 - glutaredoxin subgroup I, expressed"	Medtr3g114230.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.2717.1.S1_a_at	A	A1TS	POPTR_0017s12290	POPTR_0017s12290 (10)	scaffold_17:12509884-12510030(-) (10)	NA	Q9FKA5	Uncharacterized protein At5g39570	AT5G39570.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g12580.1	"pro-resilin precursor, putative, expressed"	Medtr6g013300.1	"Stress protein DDR48, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2717.2.S1_s_at	A	A1TS	POPTR_0008s13200	POPTR_0008s13200 (11)	scaffold_8:8651871-8652306(+) (11)	NA	Q9CAC1	Endoglucanase 8	AT1G70710.1	glycosyl hydrolase 9B1 	LOC_Os06g14540.1	"endoglucanase, putative, expressed"	Medtr4g157670.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2718.1.A1_s_at	A	A1TS	POPTR_0016s05450	POPTR_0016s05450 (11)	scaffold_16:3377813-3378648(-) (11)	NA	Q64520	Guanylate kinase	AT3G57550.2	guanylate kinase 	LOC_Os12g33100.1	"guanylate kinase, putative, expressed"	Medtr7g110630.2	Guanylate kinase/L-type calcium channel region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2719.1.S1_at	A	A1TS	POPTR_0010s13190	POPTR_0010s13190 (10)	scaffold_10:13069617-13070050(+) (10)	POPTR_0008s12230 (8)	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
Ptp.2719.2.A1_at	A	A1TS	POPTR_0010s13190	POPTR_0010s13190 (10)	scaffold_10:13070889-13075134(+) (10)	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
Ptp.272.2.A1_a_at	A	A1TS	POPTR_0001s35450	POPTR_0001s35450 (11)	scaffold_1:33787963-33788166(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G14500.1	aldose 1-epimerase family protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.2724.1.S1_s_at	A	A1TS	POPTR_0034s00210	POPTR_0034s00210 (11)	scaffold_34:105790-106937(+) (11)	NA	NA	NA	AT3G21400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g35550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2727.1.S1_s_at	A	A1TS	POPTR_0009s08000	POPTR_0009s08000 (11)	scaffold_9:7421363-7423141(-) (11)	POPTR_0001s28790 (6)	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os03g18454.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed"	Medtr3g034410.1	"Gamma-interferon-inducible lysosomal thiol reductase precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2730.1.S1_s_at	A	A1TS	POPTR_0019s08290	POPTR_0019s08290 (11)	scaffold_19:9771347-9771387(-) (11)	NA	O04153	Calreticulin-3	AT1G08450.1	calreticulin 3 	LOC_Os05g43170.1	"calreticulin precursor protein, putative, expressed"	Medtr7g089980.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.274.1.S1_at	A	A1TS	POPTR_0016s08770	POPTR_0016s08770 (11)	scaffold_16:6565799-6566593(-) (11)	NA	Q9Z137	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2	AT2G37090.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g17850.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr7g120990.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
Ptp.2741.1.S1_s_at	A	A2TS	POPTR_0002s07890	POPTR_0002s07890 (11)//POPTR_0005s20510 (11)	scaffold_2:5417177-5418003(-) (11)//scaffold_5:19564407-19565219(+) (11)	NA	Q9C5W3	"NAD kinase 2, chloroplastic"	AT1G21640.1	NAD kinase 2 	LOC_Os11g08670.1	"NAD kinase, putative, expressed"	Medtr4g104490.1	ATP-NAD/AcoX kinase 	GO:0008152|metabolic process	GO:0003951|NAD+ kinase activity	NA
Ptp.2748.1.A1_s_at	A	A1TS	POPTR_0002s11230	POPTR_0002s11230 (11)	scaffold_2:8299166-8299372(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT5G49660.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os12g43660.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.275.2.S1_s_at	A	A1TS	POPTR_0001s34410	POPTR_0001s34410 (11)	scaffold_1:32561527-32561820(+) (11)	NA	NA	NA	AT1G29395.1	COLD REGULATED 314 INNER MEMBRANE 1 	LOC_Os05g49170.1	"cold acclimation protein WCOR413, putative, expressed"	Medtr4g136630.1	Cold acclimation WCOR413 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2750.1.S1_s_at	A	A1TS	POPTR_0007s13260	POPTR_0007s13260 (11)	scaffold_7:13379182-13379350(-) (11)	NA	Q9AR07	Jasmonate O-methyltransferase	AT1G19640.1	jasmonic acid carboxyl methyltransferase 	LOC_Os11g15130.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr5g020860.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.2751.1.S1_at	A	A1TS	POPTR_0003s10790	POPTR_0003s10790 (9)	scaffold_3:11675857-11677443(-) (9)	NA	Q9C5Y4	Structural maintenance of chromosomes protein 2-1	AT5G62410.1	structural maintenance of chromosomes 2 	LOC_Os01g67740.1	"chromosome segregation protein, putative, expressed"	Medtr8g087350.1	Prefoldin; SMCs flexible hinge 	GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane||GO:0005694|chromosome
Ptp.2753.1.S1_at	A	A1TS	POPTR_0004s05550	POPTR_0004s05550 (9)	scaffold_4:4299077-4299666(+) (9)	NA	Q9UNI6	Dual specificity protein phosphatase 12	AT4G18593.1	dual specificity protein phosphatase-related 	LOC_Os02g15270.1	"tyrosine-protein phosphatase YVH1, putative, expressed"	Medtr7g106530.1	Dual specificity protein phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2754.1.A1_a_at	A	A1TS	POPTR_0008s11610	POPTR_0008s11610 (11)	scaffold_8:7404022-7405753(+) (11)	NA	Q9FV52	"Methionine aminopeptidase 1B, chloroplastic"	AT1G13270.1	methionine aminopeptidase 1B 	LOC_Os04g52100.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g069010.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.2754.1.A1_at	A	A1TS	POPTR_0008s11610	POPTR_0008s11610 (10)	scaffold_8:7403656-7406564(+) (10)	NA	Q9FV52	"Methionine aminopeptidase 1B, chloroplastic"	AT1G13270.1	methionine aminopeptidase 1B 	LOC_Os04g52100.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g069010.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.2758.2.S1_at	A	A2TA	POPTR_0012s02460	POPTR_0012s02460 (10)//POPTR_0015s01270 (9)	scaffold_12:2025602-2025847(+) (10)//scaffold_15:801550-801784(-) (9)	NA	P70168	Importin subunit beta-1	AT5G53480.1	ARM repeat superfamily protein 	LOC_Os12g38110.1	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
Ptp.2759.1.S1_at	A	A1TS	POPTR_0002s25120	POPTR_0002s25120 (11)	scaffold_2:22309861-22310115(-) (11)	NA	Q9SW95	"Asparaginyl-tRNA synthetase, cytoplasmic 2"	AT3G07420.1	asparaginyl-tRNA synthetase 2 	LOC_Os01g27520.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr8g011980.1	"tRNA synthetase, class II (D, K and N) "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.2765.2.S1_s_at	A	A1TS	POPTR_0012s01730	POPTR_0012s01730 (11)	scaffold_12:1302811-1302903(-) (11)	NA	Q94BN2	Spermine synthase	AT5G53120.5	spermidine synthase 3 	LOC_Os02g15550.2	"spermidine synthase, putative, expressed"	Medtr3g124370.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.2766.1.S1_s_at	A	A1TS	POPTR_0001s46400	POPTR_0001s46400 (10)	scaffold_1:46791689-46792084(-) (11)	NA	Q9SA77	UDP-arabinose 4-epimerase 1	AT1G30620.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g04690.2	"UDP-arabinose 4-epimerase 1, putative, expressed"	Medtr4g137730.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2769.1.S1_a_at	A	A1TS	POPTR_0001s01810	POPTR_0001s01810 (11)	scaffold_1:1317113-1317367(+) (11)	NA	Q8VZC9	Vacuolar protein sorting-associated protein 25	AT4G19003.1	E2F/DP family winged-helix DNA-binding domain 	LOC_Os01g46932.1	"vacuolar protein-sorting-associated protein 25, putative, expressed"	Medtr5g028140.1	"ESCRT-II complex, vps25 subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2774.1.S1_at	A	A1TS	POPTR_0003s21780	POPTR_0003s21780 (11)	scaffold_3:19813314-19813856(-) (11)	NA	Q7F8R0	Zinc finger CCCH domain-containing protein 14	AT3G12130.1	KH domain-containing protein / zinc finger (CCCH type) family protein 	LOC_Os02g10080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g111840.1	"Zinc finger, CCCH-type; KH, type 1 "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
Ptp.2780.1.S1_at	A	A1TS	POPTR_0008s17950	POPTR_0008s17950 (11)	scaffold_8:12047040-12047079(+) (11)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2780.1.S1_s_at	A	A1TS	POPTR_0008s17950	POPTR_0008s17950 (11)	scaffold_8:12047362-12047731(+) (11)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2780.2.S1_a_at	A	A1TS	POPTR_0008s17950	POPTR_0008s17950 (9)	scaffold_8:12046814-12046846(+) (9)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2781.1.S1_a_at	A	A1TS	POPTR_0001s34670	POPTR_0001s34670 (11)	scaffold_1:32939897-32940440(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2781.2.S1_at	A	A1MS	POPTR_0001s34690	POPTR_0001s34690 (11)	scaffold_1:32942895-32943035(-) (11)	NA	Q9SJ89	"Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic"	AT2G04700.1	ferredoxin thioredoxin reductase catalytic beta chain family protein 	LOC_Os09g07570.1	"ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed"	Medtr6g008880.1	"Ferredoxin thioredoxin reductase, beta chain "	GO:0055114|oxidation reduction	GO:0008937|ferredoxin reductase activity	NA
Ptp.2781.3.A1_a_at	A	A1MS	POPTR_0001s34690	POPTR_0001s34690 (11)	scaffold_1:32943081-32943181(-) (11)	NA	Q9SJ89	"Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic"	AT2G04700.1	ferredoxin thioredoxin reductase catalytic beta chain family protein 	LOC_Os09g07570.1	"ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed"	Medtr6g008880.1	"Ferredoxin thioredoxin reductase, beta chain "	GO:0055114|oxidation reduction	GO:0008937|ferredoxin reductase activity	NA
Ptp.2783.1.A1_at	A	A1TS	POPTR_0008s19150	POPTR_0008s19150 (10)	scaffold_8:13124426-13124901(-) (10)	NA	NA	NA	AT5G40460.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g034560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2784.1.A1_s_at	A	A1TS	POPTR_0005s20170	POPTR_0005s20170 (11)	scaffold_5:19231637-19231902(+) (11)	NA	Q9SCJ9	Ubiquitin carboxyl-terminal hydrolase 26	AT3G49600.1	ubiquitin-specific protease 26 	LOC_Os03g09260.1	"ubiquitin carboxyl-terminal hydrolase 26, putative, expressed"	Medtr3g133630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.2785.1.S1_at	A	A1TS	POPTR_0003s21660	POPTR_0003s21660 (9)	scaffold_3:19731722-19731878(+) (9)	NA	Q42517	Peroxidase N	AT5G19890.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr2g046610.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2786.1.S1_at	A	A1TS	POPTR_0011s12070	POPTR_0011s12070 (11)	scaffold_11:14850746-14851051(-) (11)	NA	P46032	Peptide transporter PTR2	AT2G02040.1	peptide transporter 2 	LOC_Os03g51050.1	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2787.1.S1_s_at	A	A1TS	POPTR_0010s06730	POPTR_0010s06730 (11)	scaffold_10:8012183-8014294(-) (11)	NA	A2A4P0	ATP-dependent RNA helicase DHX8	AT1G27900.1	RNA helicase family protein 	LOC_Os11g20554.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.2791.1.S1_s_at	A	A1TS	POPTR_0001s38070	POPTR_0001s38070 (11)	scaffold_1:37105448-37105789(+) (11)	NA	NA	NA	AT4G21740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g136820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2794.1.S1_s_at	A	A1TS	POPTR_0008s13040	POPTR_0008s13040 (11)	scaffold_8:8497469-8498336(-) (11)	NA	Q9ZVF3	MLP-like protein 328	AT1G14930.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr1g034930.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.2796.1.S1_at	A	A1TS	POPTR_0019s09210	POPTR_0019s09210 (10)	scaffold_19:10781117-10781570(-) (10)	NA	Q9C502	Putative clathrin assembly protein At1g33340	AT1G33340.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os11g14000.1	"ANTH domain containing protein, expressed"	Medtr6g070790.1	ENTH/VHS; ANTH 	NA	GO:0005543|phospholipid binding	NA
Ptp.2798.1.S1_at	A	A1TS	POPTR_0011s16560	POPTR_0011s16560 (11)	scaffold_11:18412055-18412283(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44440.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.280.1.A1_at	A	A1TS	POPTR_0002s08240	POPTR_0002s08240 (11)	scaffold_2:5722267-5723329(+) (11)	NA	Q42592	"L-ascorbate peroxidase S, chloroplastic/mitochondrial"	AT4G08390.2	stromal ascorbate peroxidase 	LOC_Os12g07820.1	"OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr3g100720.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2801.1.A1_at	A	A1TS	POPTR_0001s16590	POPTR_0001s16590 (11)	scaffold_1:13354449-13355933(+) (11)	NA	Q94AU2	25.3 kDa vesicle transport protein	AT1G11890.1	Synaptobrevin family protein 	LOC_Os06g09850.1	"25.3 kDa vesicle transport protein, putative, expressed"	Medtr8g025760.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.2803.1.A1_at	A	A1TS	POPTR_0002s03340	POPTR_0002s03340 (11)	scaffold_2:2057645-2058149(-) (11)	NA	Q40517	Mitogen-activated protein kinase homolog NTF3	AT1G10210.2	mitogen-activated protein kinase 1 	LOC_Os06g48590.2	"CGMC_MAPKCMGC_2_SLT2y_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g134400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2806.1.S1_s_at	A	A1TS	POPTR_0005s04040	POPTR_0005s04040 (11)	scaffold_5:2685366-2685498(-) (11)	NA	O23732	"Glutathione synthetase, chloroplastic"	AT5G27380.1	glutathione synthetase 2 	LOC_Os11g42350.3	"glutathione synthetase, chloroplast precursor, putative, expressed"	Medtr7g139670.1	"Eukaryotic glutathione synthase; Eukaryotic glutathione synthase, ATP-binding; "	GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004363|glutathione synthase activity||GO:0005524|ATP binding	NA
Ptp.2809.1.A1_s_at	A	A1TS	POPTR_0004s19400	POPTR_0004s19400 (11)	scaffold_4:19253183-19253630(+) (11)	NA	Q4V8J4	Glycerol-3-phosphate acyltransferase 3	AT5G60620.1	glycerol-3-phosphate acyltransferase 9 	LOC_Os07g34730.1	"acyltransferase, putative, expressed"	Medtr8g129160.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.2810.1.S1_s_at	A	A1TS	POPTR_0003s06590	POPTR_0003s06590 (11)	scaffold_3:8101132-8101375(-) (11)	NA	Q9Y4D2	Sn1-specific diacylglycerol lipase alpha	AT3G14075.2	"Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 "	LOC_Os02g54010.1	"lipase class 3 family protein, putative, expressed"	Medtr8g025380.1	"lipase class 3 family protein, related "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.2817.1.S1_a_at	A	A1TS	POPTR_0006s22650	POPTR_0006s22650 (11)	scaffold_6:21592202-21593459(+) (11)	NA	NA	NA	AT2G36145.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g64270.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2818.1.S1_at	A	A1TS	POPTR_0010s25420	POPTR_0010s25420 (10)	scaffold_10:21109866-21110307(-) (10)	NA	O94901	SUN domain-containing protein 1	AT5G04990.1	SAD1/UNC-84 domain protein 1 	LOC_Os01g16220.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr8g047470.1	"Sad1/UNC-like, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2819.1.S1_s_at	A	A3TS	POPTR_0004s24010	POPTR_0004s24020 (11)//POPTR_0018s00260 (11)//POPTR_0004s24010 (11)	scaffold_18:72986-73224(-) (11)//scaffold_4:22655452-22655690(-) (11)//scaffold_4:22682229-22682467(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.2	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2823.1.S1_s_at	A	A1TS	POPTR_0015s11660	POPTR_0015s11660 (11)	scaffold_15:12210604-12211179(-) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os12g29520.4	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.2825.1.S1_s_at	A	A1TS	POPTR_0014s06570	POPTR_0014s06570 (11)	scaffold_14:4994764-4995296(+) (11)	NA	NA	NA	AT3G60850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g14290.1	expressed protein	AC233684_2.1	hypothetical protein AC233684.2 2311-2939 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2828.1.A1_at	A	A1TS	POPTR_0006s11430	POPTR_0006s11430 (11)	scaffold_6:8663696-8664213(+) (11)	NA	Q9FM85	Probable receptor-like protein kinase At5g56460	AT5G01020.1	Protein kinase superfamily protein 	LOC_Os12g02810.1	"protein kinase domain containing protein, expressed"	Medtr7g081040.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.283.1.A1_at	A	A1TS	POPTR_0004s09660	POPTR_0004s09660 (10)	scaffold_4:8176068-8176574(+) (10)	NA	Q6DEY3	Abhydrolase domain-containing protein FAM108B1	AT5G38220.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g49510.1	"OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g032300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2830.1.A1_at	A	A1TS	POPTR_0001s13180	POPTR_0001s13180 (11)	scaffold_1:10251301-10251462(-) (11)	NA	Q8LL04	RNA polymerase II C-terminal domain phosphatase-like 3	AT2G33540.1	C-terminal domain phosphatase-like 3 	LOC_Os11g31890.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr7g020970.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
Ptp.2832.1.A1_at	A	A1TS	POPTR_0016s13940	POPTR_0016s13940 (9)	scaffold_16:13170080-13170560(+) (9)	NA	Q68FJ8	TOM1-like protein 2	AT2G38410.1	ENTH/VHS/GAT family protein 	LOC_Os05g39760.1	"VHS and GAT domain containing protein, expressed"	Medtr7g077730.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
Ptp.2834.1.S1_s_at	A	A1TS	POPTR_0010s21140	POPTR_0010s21140 (11)	scaffold_10:18547585-18547784(+) (11)	NA	NA	NA	AT3G55420.1	unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g38470.2	expressed protein	Medtr7g027080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2835.1.S1_at	A	A1MS	POPTR_0018s12700	POPTR_0018s12700 (9)	scaffold_18:13216994-13217543(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2836.1.S1_at	A	A1TS	POPTR_0009s08970	POPTR_0009s08970 (10)	scaffold_9:8060962-8061424(+) (10)	NA	NA	NA	AT1G49975.1	"INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr3g010060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2838.1.S1_at	A	A1TS	POPTR_0002s11290	POPTR_0002s11290 (11)	scaffold_2:8346394-8346703(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT1G51580.1	RNA-binding KH domain-containing protein 	LOC_Os01g13470.1	"KH domain containing protein, putative, expressed"	Medtr3g127960.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.2839.1.S1_at	A	A1MS	POPTR_0012s10840	POPTR_0012s10840 (9)	scaffold_12:11539879-11540369(+) (9)	NA	Q55467	Magnesium-protoporphyrin O-methyltransferase	AT4G25080.5	magnesium-protoporphyrin IX methyltransferase 	LOC_Os06g04150.1	"magnesium-protoporphyrin O-methyltransferase, putative, expressed"	Medtr4g152280.1	Magnesium protoporphyrin O-methyltransferase 	GO:0015979|photosynthesis||GO:0015995|chlorophyll biosynthetic process	GO:0046406|magnesium protoporphyrin IX methyltransferase activity	NA
Ptp.284.1.A1_at	A	A1TS	POPTR_0008s20480	POPTR_0008s20480 (11)	scaffold_8:14249921-14250230(+) (11)	NA	P54567	Uncharacterized protein yqkD	AT4G14290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g24450.1	"OsPOP8 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr2g026400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2840.1.S1_s_at	A	A1TS	POPTR_0014s16740	POPTR_0014s16740 (11)	scaffold_14:12824110-12825990(-) (11)	POPTR_0014s16770 (6)	NA	NA	AT2G04340.1	unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g30140.1	expressed protein	Medtr4g114840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2843.1.S1_at	A	A1TS	POPTR_0014s08540	POPTR_0014s08540 (9)	scaffold_14:6344040-6344320(-) (9)	NA	NA	NA	AT1G01500.1	Erythronate-4-phosphate dehydrogenase family protein 	LOC_Os03g56420.1	expressed protein	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2845.1.S1_at	A	A1TA	POPTR_0014s01910	POPTR_0014s01910 (9)	scaffold_14:1735511-1735983(-) (9)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.2847.1.A1_at	A	A1TS	POPTR_0001s35680	POPTR_0001s35680 (11)	scaffold_1:34032294-34032824(+) (11)	NA	O48963	Phototropin-1	AT3G45780.2	phototropin 1 	LOC_Os12g01140.1	"AGC_PVPK_like_kin82y.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2850.1.S1_at	A	A1TS	POPTR_0004s01410	POPTR_0004s01410 (9)	scaffold_4:787788-789144(-) (9)	NA	Q43846	"Soluble starch synthase 3, chloroplastic/amyloplastic"	AT1G11720.2	starch synthase 3 	LOC_Os04g53310.1	"soluble starch synthase 3, chloroplast precursor, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2854.1.A1_at	A	A1TS	POPTR_0012s07620	POPTR_0012s07620 (11)	scaffold_12:8537386-8537874(+) (11)	NA	P34909	General negative regulator of transcription subunit 4	AT5G62910.1	RING/U-box superfamily protein 	LOC_Os02g37030.1	"protein binding protein, putative, expressed"	Medtr6g009590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2855.1.A1_at	A	A1MS	POPTR_0001s17790	POPTR_0001s17790 (9)	scaffold_1:14662608-14662693(-) (9)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os11g43820.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2857.1.S1_s_at	A	A1TS	POPTR_0013s11030	POPTR_0013s11030 (11)	scaffold_13:11702443-11703931(+) (11)	NA	NA	NA	AT1G35340.1	ATP-dependent protease La (LON) domain protein 	LOC_Os11g11210.1	"OsClp12 - Putative Clp protease homologue, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
Ptp.2859.1.A1_s_at	A	A1TS	POPTR_0004s05670	POPTR_0004s05670 (11)	scaffold_4:4432213-4432260(-) (11)	NA	Q96SZ5	2-aminoethanethiol dioxygenase	AT3G58670.3	Protein of unknown function (DUF1637) 	LOC_Os04g06790.2	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g009090.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
Ptp.286.1.A1_at	A	A1TS	POPTR_0009s03960	POPTR_0009s03960 (9)	scaffold_9:4531888-4533260(-) (9)	NA	Q9M2S6	E3 ubiquitin-protein ligase SDIR1	AT3G55530.1	RING/U-box superfamily protein 	LOC_Os03g16570.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g084210.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2864.1.S1_s_at	A	A1TS	POPTR_0013s13000	POPTR_0013s13000 (11)	scaffold_13:13585332-13585604(-) (11)	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2864.2.S1_at	A	A1MS	POPTR_0013s13000	POPTR_0013s13000 (11)	scaffold_13:13580526-13580722(-) (11)	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2866.1.S1_at	A	A1MS	POPTR_0006s09310	POPTR_0006s09310 (10)	scaffold_6:6837121-6837413(-) (10)	NA	P0CI03	Putative peptide/nitrate transporter At2g37900	AT2G37900.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2869.1.A1_at	A	A1TS	POPTR_0001s46570	POPTR_0001s46570 (11)	scaffold_1:46941370-46941820(+) (11)	NA	Q94C59	Patellin-4	AT1G30690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os06g45990.2	"patellin-5, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.287.1.A1_s_at	A	A1TS	POPTR_0001s17370	POPTR_0001s17370 (11)	scaffold_1:14173027-14173414(-) (11)	NA	P00428	"Cytochrome c oxidase subunit 5B, mitochondrial"	AT1G80230.1	Rubredoxin-like superfamily protein 	LOC_Os06g05080.1	"cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed"	Medtr2g125770.1	"Cytochrome c oxidase, subunit Vb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005740|mitochondrial envelope
Ptp.2875.1.S1_at	A	A1TS	POPTR_0004s10790	POPTR_0004s10790 (9)	scaffold_4:9334252-9334800(+) (9)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT5G16000.1	NSP-interacting kinase 1 	LOC_Os06g16330.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2876.1.A1_at	A	A1TA	POPTR_0013s11910	POPTR_0013s11910 (10)	scaffold_13:12535269-12535578(+) (10)	NA	NA	NA	AT1G34355.1	forkhead-associated (FHA) domain-containing protein  	LOC_Os11g07050.1	"FHA domain containing protein, putative, expressed"	Medtr1g122320.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.288.1.A1_s_at	A	A1TS	POPTR_0003s14360	POPTR_0003s14360 (9)	scaffold_3:14450888-14451426(+) (9)	NA	Q03685	Luminal-binding protein 5	AT5G42020.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2885.1.S1_s_at	A	A2TS	POPTR_0013s07710	POPTR_0019s07170 (11)//POPTR_0013s07710 (11)	scaffold_13:6558762-6558952(+) (11)//scaffold_19:7915076-7915293(+) (11)	NA	Q5U2W5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
Ptp.2885.2.A1_at	A	A1TS	POPTR_0013s07710	POPTR_0013s07710 (11)	scaffold_13:6558945-6559114(+) (11)	NA	Q5U2W5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
Ptp.2888.1.S1_at	A	A1TS	POPTR_0001s24390	POPTR_0001s24390 (10)	scaffold_1:23677887-23678016(-) (10)	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr2g114650.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2888.2.S1_a_at	A	A1TS	POPTR_0001s24390	POPTR_0001s24390 (11)	scaffold_1:23677252-23677560(-) (11)	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr2g114650.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.289.1.S1_at	A	A1TS	POPTR_0004s24210	POPTR_0004s24210 (10)	scaffold_4:22913446-22914220(-) (10)	NA	Q8R116	Protein notum homolog	AT5G45280.2	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2890.1.A1_at	A	A1TS	POPTR_0010s23910	POPTR_0010s23910 (10)	scaffold_10:20365198-20366066(+) (10)	POPTR_0008s02890 (6)	Q4V3C8	3-phosphoinositide-dependent protein kinase 2	AT3G10540.1	3-phosphoinositide-dependent protein kinase 	LOC_Os01g65230.1	"AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g139660.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2891.1.S1_s_at	A	A1TS	POPTR_0003s08120	POPTR_0003s08120 (10)	scaffold_3:9551819-9552150(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2893.1.S1_s_at	A	A1TS	POPTR_0005s27240	POPTR_0005s27240 (11)	scaffold_5:24972620-24973383(-) (11)	NA	P30924	"1,4-alpha-glucan-branching enzyme"	AT5G03650.1	starch branching enzyme 2.2 	LOC_Os06g51084.1	"1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed"	Medtr7g126840.1	"Alpha amylase, C-terminal all-beta; "	GO:0005975|carbohydrate metabolic process	"GO:0043169|cation binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2900.1.S1_at	A	A1TS	POPTR_0003s11650	POPTR_0003s11650 (11)	scaffold_3:12426759-12427239(-) (11)	NA	Q2RNG2	[Protein-PII] uridylyltransferase	AT1G12420.1	ACT domain repeat 8 	LOC_Os08g02500.1	"ACT domain containing protein, putative"	Medtr8g106560.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
Ptp.2903.1.A1_s_at	A	A2TS	POPTR_0012s01620	POPTR_0012s01620 (11)//POPTR_0012s01630 (11)	scaffold_12:1237445-1237480(+) (11)//scaffold_12:1244496-1244531(+) (11)	NA	Q39219	"Alternative oxidase 1a, mitochondrial"	AT3G22370.1	alternative oxidase 1A 	LOC_Os04g51150.1	"transposon protein, putative, unclassified, expressed"	Medtr5g026770.1	Alternative oxidase 	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
Ptp.2904.1.S1_s_at	A	A1TS	POPTR_0001s04310	POPTR_0001s04310 (11)	scaffold_1:3405580-3406985(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134180.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity"	NA
Ptp.2906.1.S1_at	A	A1TS	POPTR_0011s01410	POPTR_0011s01410 (11)	scaffold_11:989924-990350(-) (11)	NA	NA	NA	AT1G62305.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g50040.1	"DNA binding protein, putative, expressed"	Medtr4g143290.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.2908.1.A1_at	A	A1TS	POPTR_0013s07150	POPTR_0013s07150 (11)	scaffold_13:5878869-5881489(+) (11)	NA	P38935	DNA-binding protein SMUBP-2	AT5G35970.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g04440.1	"DNA-binding protein, putative, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2909.1.A1_s_at	A	A5TS	POPTR_0019s01340	POPTR_0121s00210 (11)//POPTR_0019s01340 (11)//POPTR_0121s00230 (11)//POPTR_0019s01460 (11)//POPTR_0019s01370 (9)	scaffold_121:8953-9064(-) (11)//scaffold_121:28975-29086(-) (11)//scaffold_19:1181067-1181178(+) (11)//scaffold_19:1197418-1197514(+) (9)//scaffold_19:1275577-1275688(+) (11)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
Ptp.291.1.S1_s_at	A	A1TS	POPTR_0016s03510	POPTR_0016s03510 (11)	scaffold_16:1877246-1877519(-) (11)	NA	Q6NLB1	F-box protein At2g26850	AT2G26850.1	F-box family protein 	LOC_Os01g17390.1	"OsFBX5 - F-box domain containing protein, expressed"	Medtr5g096190.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2911.1.S1_at	A	A1TS	POPTR_0006s21950	POPTR_0006s21950 (11)	scaffold_6:20912560-20912773(-) (11)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2919.1.S1_a_at	A	A1TS	POPTR_0005s04150	POPTR_0005s04150 (11)	scaffold_5:2741319-2741360(+) (11)//scaffold_526:3331-3372(-) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT5G06060.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2919.2.A1_s_at	A	A2TS	POPTR_0005s04130	POPTR_0005s04130 (11)//POPTR_0526s00230 (11)	scaffold_5:2731411-2733504(+) (11)//scaffold_526:307-13961(-) (11)	NA	Q9ASR4	Branched-chain-amino-acid aminotransferase-like protein 2	AT5G27410.2	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os03g24460.2	"aminotransferase domain containing protein, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2919.3.S1_at	A	A1TA	POPTR_0526s00210	POPTR_0526s00210 (11)	scaffold_526:3174-3630(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2920.1.S1_at	A	A1TS	POPTR_0006s08230	POPTR_0006s08230 (11)	scaffold_6:5977685-5978473(+) (11)	NA	Q9M531	Histone H2A	AT5G02560.1	histone H2A 12 	LOC_Os05g02300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr2g114590.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2922.1.S1_at	A	A1TS	POPTR_0009s11840	POPTR_0009s11840 (11)	scaffold_9:9748485-9749007(-) (11)	NA	P54654	Adenylyl cyclase-associated protein	AT4G34490.1	cyclase associated protein 1 	LOC_Os03g51250.1	"adenylyl cyclase-associated protein, putative, expressed"	Medtr4g095480.1	Cyclase-associated protein; 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.2924.1.A1_at	A	A1TS	POPTR_0004s18160	POPTR_0004s18160 (11)	scaffold_4:18156197-18156393(+) (11)	NA	Q8LBA6	CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1	AT1G68000.1	phosphatidylinositol synthase 1 	LOC_Os02g03110.2	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr4g098430.1	CDP-alcohol phosphatidyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2925.1.S1_at	A	A1TS	POPTR_0013s15610	POPTR_0013s15610 (9)	scaffold_13:15538439-15538736(-) (9)	NA	NA	NA	AT5G01970.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). 	LOC_Os05g25070.1	expressed protein	Medtr3g083960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2927.1.A1_at	A	A1TS	POPTR_0006s20870	POPTR_0006s20870 (10)	scaffold_6:19919899-19920268(+) (10)	NA	O73787	Gamma-tubulin complex component 3 homolog	AT5G06680.1	spindle pole body component 98 	LOC_Os09g27370.2	"Spc97 / Spc98 family protein, putative, expressed"	Medtr7g112250.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
Ptp.2927.2.S1_at	A	A1TS	POPTR_0006s20870	POPTR_0006s20870 (10)	scaffold_6:19918824-19919318(+) (10)	POPTR_0016s05990 (6)	O73787	Gamma-tubulin complex component 3 homolog	AT5G06680.1	spindle pole body component 98 	LOC_Os09g27370.2	"Spc97 / Spc98 family protein, putative, expressed"	Medtr7g112250.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
Ptp.2928.1.A1_at	A	A1TS	POPTR_0004s07810	POPTR_0004s07810 (10)	scaffold_4:6408676-6408959(+) (10)	NA	Q20EV4	Putative septum site-determining protein minD	AT5G24020.1	septum site-determining protein (MIND) 	LOC_Os06g01690.1	"septum site-determining protein minD, putative, expressed"	Medtr4g092230.1	"Septum site-determining protein minD, putative "	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
Ptp.2932.1.S1_at	A	A1TS	POPTR_0016s02000	POPTR_0016s02000 (11)	scaffold_16:928632-929299(+) (11)	NA	Q53196	Uncharacterized aminotransferase y4uB	AT3G22200.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g10510.1	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2933.1.A1_at	A	A1TS	POPTR_0013s07500	POPTR_0013s07500 (10)	scaffold_13:6292839-6293589(+) (10)	NA	NA	NA	AT3G13960.1	growth-regulating factor 5 	LOC_Os04g51190.2	"growth-regulating factor, putative, expressed"	Medtr5g027250.1	QLQ 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
Ptp.2937.1.S1_s_at	A	A1TS	POPTR_0001s35090	POPTR_0001s35090 (10)	scaffold_1:33369569-33370796(+) (10)	NA	Q9FNE2	Glutaredoxin-C2	AT5G40370.1	Glutaredoxin family protein 	LOC_Os04g42930.1	"OsGrx_C2.2 - glutaredoxin subgroup I, expressed"	Medtr3g114210.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.2942.1.A1_at	A	A1TS	POPTR_0014s13090	POPTR_0014s13090 (11)	scaffold_14:9626315-9626851(-) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT4G03100.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g34840.1	"rhoGAP domain containing protein, expressed"	AC235488_25.1	PAK-box/P21-Rho-binding; RhoGAP AC235488.1 117094-119868 F EGN_Mt090430 200	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.2944.1.A1_at	A	A1TS	POPTR_0007s13080	POPTR_0007s13080 (11)	scaffold_7:13251083-13251505(-) (11)	NA	NA	NA	AT2G18245.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g04110.1	expressed protein	Medtr5g020580.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2947.1.S1_at	A	A1MS	POPTR_0011s01530	POPTR_0011s01530 (9)	scaffold_11:1066237-1068053(-) (9)	NA	O95822	"Malonyl-CoA decarboxylase, mitochondrial"	AT4G04320.2	malonyl-CoA decarboxylase family protein 	LOC_Os09g23070.1	"malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0050080|malonyl-CoA decarboxylase activity	NA
Ptp.2948.1.S1_at	A	A1TS	POPTR_0001s15490	POPTR_0001s15490 (11)	scaffold_1:12306426-12306619(-) (11)	NA	P46601	Homeobox-leucine zipper protein HAT2	AT5G47370.1	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein 	LOC_Os10g41230.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2949.1.S1_at	A	A1TS	POPTR_0004s03890	POPTR_0004s03890 (10)	scaffold_4:2761112-2761719(+) (10)	NA	NA	NA	AT1G61065.1	Protein of unknown function (DUF1218) 	LOC_Os04g58160.3	"fiber protein Fb34, putative, expressed"	AC233672_3.1	Protein of unknown function DUF1218 AC233672.2 10435-11337 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2950.1.A1_at	A	A1TS	POPTR_0017s12970	POPTR_0017s12970 (11)	scaffold_17:13149217-13149941(+) (11)	NA	NA	NA	AT3G02120.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	AC231342_22.1	hypothetical protein AC231342.3 103028-102034 I EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2955.1.A1_at	A	A1TS	POPTR_0008s04480	POPTR_0008s04480 (10)	scaffold_8:2526057-2526791(-) (10)	NA	NA	NA	AT5G13610.1	Protein of unknown function (DUF155) 	LOC_Os07g49410.1	"uncharacterized ACR, YagE family COG1723 containing protein, expressed"	Medtr5g046070.1	Protein of unknown function DUF155 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2956.1.A1_at	A	A1TS	POPTR_0004s07950	POPTR_0004s07950 (11)	scaffold_4:6516490-6516833(-) (11)	NA	Q6NQJ8	Protein SET DOMAIN GROUP 40	AT5G17240.1	SET domain group 40 	LOC_Os07g28840.1	"SET domain containing protein, expressed"	Medtr5g084550.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2956.2.S1_at	A	A1TS	POPTR_0004s07950	POPTR_0004s07950 (9)	scaffold_4:6517407-6518856(-) (11)	NA	Q6NQJ8	Protein SET DOMAIN GROUP 40	AT5G17240.1	SET domain group 40 	LOC_Os07g28840.1	"SET domain containing protein, expressed"	Medtr5g084550.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2957.1.S1_at	A	A1TS	POPTR_0002s11900	POPTR_0002s11900 (9)	scaffold_2:8822622-8823115(+) (9)	NA	NA	NA	AT1G59590.1	ZCF37 	LOC_Os03g31740.1	"ZCF37, putative, expressed"	Medtr1g023050.1	"ZCF37, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2960.1.S1_at	A	A1TS	POPTR_0002s09010	POPTR_0002s09010 (11)	scaffold_2:6383077-6383291(+) (11)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0008270|zinc ion binding"	GO:0005634|nucleus
Ptp.2961.1.S1_at	A	A1TS	POPTR_0008s15460	POPTR_0008s15460 (11)	scaffold_8:10290563-10291071(+) (11)	NA	O34569	Uncharacterized N-acetyltransferase yoaA	AT3G22560.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g46250.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g140270.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.2962.1.A1_a_at	A	A1TS	POPTR_0010s03190	POPTR_0010s03190 (11)	scaffold_10:3902140-3902332(-) (11)	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT5G19070.1	SNARE associated Golgi protein family 	LOC_Os07g46220.1	"SNARE associated Golgi protein, putative, expressed"	Medtr4g033450.1	"UPF0043 membrane protein slr0305, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2962.1.A1_at	A	A1TS	POPTR_0010s03190	POPTR_0010s03190 (11)	scaffold_10:3902082-3904465(-) (11)	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT5G19070.1	SNARE associated Golgi protein family 	LOC_Os07g46220.1	"SNARE associated Golgi protein, putative, expressed"	Medtr4g033450.1	"UPF0043 membrane protein slr0305, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2965.1.A1_at	A	A1TS	POPTR_0012s07720	POPTR_0012s07720 (11)	scaffold_12:8623146-8624853(-) (11)	NA	Q86HG0	Mannose-1-phosphate guanyltransferase alpha	AT1G74910.2	ADP-glucose pyrophosphorylase family protein 	LOC_Os03g11050.1	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr6g009470.1	Bacterial transferase hexapeptide repeat 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.2967.1.S1_s_at	A	A1TS	POPTR_0006s00630	POPTR_0006s00630 (11)	scaffold_6:332652-333302(-) (11)	NA	Q9FIK7	"Probable acetyl-CoA acetyltransferase, cytosolic 2"	AT5G47720.4	Thiolase family protein 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	AC233669_10.1	Thiolase AC233669.2 43191-49625 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.297.1.S1_s_at	A	A2TS	POPTR_0006s27050	POPTR_0018s01730 (11)//POPTR_0006s27050 (11)	scaffold_18:1575000-1575043(-) (11)//scaffold_6:25064794-25064837(-) (11)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os06g40450.3	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2971.1.S1_at	A	A1TS	POPTR_0013s11890	POPTR_0013s11890 (9)	scaffold_13:12509838-12512983(+) (10)	NA	O78458	Uncharacterized protein ycf37	AT1G22700.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g32300.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2972.1.S1_at	A	A1TS	POPTR_0006s24630	POPTR_0006s24630 (11)	scaffold_6:23214860-23214942(-) (11)	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.2	calcineurin B-like protein 10 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr1g020570.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2972.1.S1_s_at	A	A1TS	POPTR_0006s24630	POPTR_0006s24630 (11)	scaffold_6:23212988-23214850(-) (11)	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.2	calcineurin B-like protein 10 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr1g020570.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2975.1.S1_at	A	A1TS	POPTR_0012s11040	POPTR_0012s11040 (10)	scaffold_12:11660388-11660660(-) (10)	NA	Q9C1W5	Mitochondrial import inner membrane translocase subunit tim16	AT3G59280.1	"Protein Transporter, Pam16 "	LOC_Os10g33910.1	"mitochondrial import inner membrane translocase subunit Tim16, putative, expressed"	Medtr1g124900.1	Protein of unknown function UPF0108 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2976.1.S1_at	A	A1TS	POPTR_0008s12920	POPTR_0008s12920 (11)	scaffold_8:8418222-8418292(+) (11)	NA	Q54R62	Uridine-cytidine kinase C	AT2G01460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g21110.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.2977.1.A1_at	A	A1TS	POPTR_0005s07150	POPTR_0005s07150 (10)	scaffold_5:4811464-4811911(+) (10)	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2985.1.S1_at	A	A1TS	POPTR_0012s09940	POPTR_0012s09940 (11)	scaffold_12:10820336-10820424(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os08g41880.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g109230.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
Ptp.2986.1.S1_at	A	A1TS	POPTR_0019s02680	POPTR_0019s02680 (11)	scaffold_19:2480572-2480794(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2989.1.A1_at	A	A1MS	POPTR_0003s18380	POPTR_0003s18380 (9)	scaffold_3:17482043-17482473(-) (9)	POPTR_0003s18430 (8)	Q8L831	Nudix hydrolase 3	AT1G79690.1	nudix hydrolase homolog 3 	LOC_Os02g55030.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
Ptp.299.1.A1_s_at	A	A1TS	POPTR_0012s12870	POPTR_0012s12870 (11)	scaffold_12:13248018-13248189(-) (11)	NA	A9IVX6	30S ribosomal protein S9	AT3G49080.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os07g46440.1	"ribosomal protein, putative, expressed"	Medtr1g025880.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2991.1.A1_s_at	A	A1TS	POPTR_0007s06650	POPTR_0007s06650 (11)	scaffold_7:5049313-5051383(+) (11)	NA	Q5ZID2	Programmed cell death protein 2-like	AT5G64830.1	programmed cell death 2 C-terminal domain-containing protein 	LOC_Os04g54820.1	"programmed cell death 2 C-terminal domain-containing protein, putative, expressed"	Medtr3g144680.1	"Programmed cell death protein 2, C-terminal "	NA	NA	GO:0005737|cytoplasm
Ptp.2995.1.S1_s_at	A	A1TS	POPTR_0014s07830	POPTR_0014s07830 (11)	scaffold_14:5840480-5841297(-) (11)	NA	NA	NA	AT1G01730.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g085210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2996.1.S1_at	A	A1TA	POPTR_0015s14290	POPTR_0015s14290 (9)	scaffold_15:13955759-13956201(+) (11)	NA	NA	NA	AT5G51680.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2996.2.A1_at	A	A1TS	POPTR_0015s14290	POPTR_0015s14290 (11)	scaffold_15:13955949-13956764(-) (11)	NA	NA	NA	AT5G51680.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3.1.S1_at	A	A1TS	POPTR_0005s20030	POPTR_0005s20030 (11)	scaffold_5:19044352-19045610(-) (11)	POPTR_0002s08420 (6)	Q9STN5	"Uncharacterized protein At4g08330, chloroplastic"	AT4G08330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g39060.1	expressed protein	Medtr1g037140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.30.2.A1_s_at	A	A2TS	POPTR_0017s02120	POPTR_0017s02120 (11)//POPTR_0017s02140 (11)	scaffold_17:1548074-1548216(+) (11)//scaffold_17:1566886-1567028(+) (11)	NA	A4IGK4	RNA-binding protein 5	AT3G54230.1	suppressor of abi3-5 	LOC_Os02g07070.1	"RNA recognition motif family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3000.1.S1_at	A	A1TS	POPTR_0017s05790	POPTR_0017s05790 (10)	scaffold_17:4522971-4524325(+) (10)	NA	A7SXZ6	Probable O-sialoglycoprotein endopeptidase	AT4G22720.2	Actin-like ATPase superfamily protein 	LOC_Os05g10630.1	"O-sialoglycoprotein endopeptidase, putative, expressed"	Medtr4g025830.1	"Peptidase M22, glycoprotease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.3001.2.A1_s_at	A	A1TS	POPTR_0002s22440	POPTR_0002s22440 (11)	scaffold_2:19169414-19169910(-) (11)	NA	Q8CFY5	"Protoheme IX farnesyltransferase, mitochondrial"	AT2G44520.1	cytochrome c oxidase 10 	LOC_Os01g34390.1	"prenyltransferase, putative, expressed"	Medtr1g146440.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
Ptp.3007.1.A1_s_at	A	A1TS	POPTR_0002s06770	POPTR_0002s06770 (11)	scaffold_2:4544586-4545923(-) (11)	NA	Q54IL5	UDP-sugar-dependent glycosyltransferase 52	AT1G43620.3	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64750.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr1g125050.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.3011.1.A1_at	A	A1TS	POPTR_0015s13920	POPTR_0015s13920 (11)	scaffold_15:13687241-13688157(+) (11)	NA	Q9FJ82	"Putative dihydrodipicolinate reductase 3, chloroplastic"	AT5G52100.1	"Dihydrodipicolinate reductase, bacterial/plant "	LOC_Os03g02690.3	"dihydrodipicolinate reductase, putative, expressed"	Medtr1g129340.1	Dihydrodipicolinate reductase 	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009089|lysine biosynthetic process via diaminopimelate||GO:0044281|small molecule metabolic process	GO:0008839|dihydrodipicolinate reductase activity	NA
Ptp.3014.1.A1_s_at	A	A1TS	POPTR_0002s16060	POPTR_0002s16060 (11)	scaffold_2:11957917-11958280(+) (11)	NA	NA	NA	AT4G00500.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.3017.1.S1_at	A	A1TS	POPTR_0018s09240	POPTR_0018s09240 (10)	scaffold_18:10102778-10103216(+) (10)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G19670.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	AC235664_16.1	Exostosin-like AC235664.1 66545-63524 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
Ptp.3020.1.S1_s_at	A	A1TS	POPTR_0002s26640	POPTR_0002s26640 (11)	scaffold_2:23528578-23529451(+) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3021.1.S1_at	A	A1TS	POPTR_0004s22140	POPTR_0004s22140 (9)	scaffold_4:21092010-21092522(-) (9)	NA	Q6DBP8	GATA transcription factor 11	AT1G08010.2	GATA transcription factor 11 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr2g110110.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.3021.2.S1_at	A	A1TS	POPTR_0004s22150	POPTR_0004s22150 (9)	scaffold_4:21094406-21094917(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3022.1.A1_s_at	A	A1TS	POPTR_0007s14590	POPTR_0007s14590 (11)	scaffold_7:14345492-14345708(-) (11)	POPTR_0005s19080 (6)	P46604	Homeobox-leucine zipper protein HAT22	AT4G37790.1	Homeobox-leucine zipper protein family 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g015030.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.3022.2.S1_s_at	A	A1TS	POPTR_0002s24320	POPTR_0002s24320 (11)	scaffold_2:21721334-21722101(+) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr7g064530.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3022.3.A1_at	A	A1MS	POPTR_0007s14590	POPTR_0007s14590 (11)	scaffold_7:14345730-14345800(-) (11)	NA	P46604	Homeobox-leucine zipper protein HAT22	AT4G37790.1	Homeobox-leucine zipper protein family 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g015030.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.3029.1.S1_a_at	A	A1MS	POPTR_0017s04920	POPTR_0017s04920 (11)	scaffold_17:3779979-3780251(-) (11)	NA	NA	NA	AT5G62270.1	BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g58750.1	expressed protein	Medtr4g089720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3030.1.S1_s_at	A	A1TS	POPTR_0010s18120	POPTR_0010s18120 (11)	scaffold_10:16484530-16485346(+) (11)	NA	Q9SAK4	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.3031.1.S1_at	A	A1TS	POPTR_0001s40180	POPTR_0001s40180 (11)	scaffold_1:39518864-39519266(-) (11)	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78860.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23720.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
Ptp.3032.1.S1_s_at	A	A2TS	POPTR_0014s02560	POPTR_0014s02560 (11)//POPTR_0014s02570 (11)	scaffold_14:2141416-2141869(-) (11)//scaffold_14:2144313-2144766(+) (11)	POPTR_1203s00200 (6)	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G42830.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g01350.1	"transferase family protein, putative, expressed"	Medtr3g147460.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.3033.1.A1_s_at	A	A1TS	POPTR_0004s11170	POPTR_0004s11170 (10)	scaffold_4:9759559-9759865(+) (10)	NA	Q9SN86	"Malate dehydrogenase, chloroplastic"	AT3G47520.1	malate dehydrogenase 	LOC_Os08g33720.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.3034.1.A1_at	A	A1TS	POPTR_0010s08770	POPTR_0010s08770 (9)	scaffold_10:9612716-9613191(-) (9)	NA	Q6YYA3	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT3G23070.1	CRM family member 3A 	LOC_Os11g37990.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr1g089760.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
Ptp.3035.1.S1_s_at	A	A1TS	POPTR_0018s02830	POPTR_0018s02830 (11)	scaffold_18:2497118-2499072(-) (11)	NA	NA	NA	AT2G24970.1	unknown protein; Has 33 Blast hits to 33 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os01g56090.1	expressed protein	Medtr1g016540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3036.1.A1_at	A	A1TS	POPTR_0018s02390	POPTR_0018s02390 (11)	scaffold_18:2140888-2141714(-) (11)	NA	Q93ZE8	Stromal cell-derived factor 2-like protein	AT2G25110.1	stromal cell-derived factor 2-like protein precursor 	LOC_Os08g17680.1	"stromal cell-derived factor 2-like protein precursor, putative, expressed"	Medtr3g138150.1	MIR 	NA	NA	GO:0016020|membrane
Ptp.3037.1.A1_at	A	A1TS	POPTR_0003s01790	POPTR_0003s01790 (10)	scaffold_3:1663896-1664902(+) (11)	NA	NA	NA	AT5G64160.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g51700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3038.1.A1_at	A	A1TS	POPTR_0004s08030	POPTR_0004s08030 (9)	scaffold_4:6563328-6563736(-) (10)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G65880.1	benzoyloxyglucosinolate 1 	LOC_Os09g38350.1	"AMP-binding domain containing protein, expressed"	Medtr3g086630.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3039.1.S1_s_at	A	A1TS	POPTR_0019s07160	POPTR_0019s07160 (11)	scaffold_19:7885531-7885794(-) (11)	NA	Q84Y01	Inositol-tetrakisphosphate 1-kinase 1	AT5G16760.1	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os10g42550.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
Ptp.3041.1.S1_at	A	A1TS	POPTR_0249s00200	POPTR_0249s00200 (9)	scaffold_249:19348-20046(+) (9)	POPTR_0004s03470 (8)	Q9C8H0	ABC transporter C family member 12	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.3041.2.S1_at	A	A2TS	POPTR_0004s03470	POPTR_0249s00200 (11)//POPTR_0004s03470 (11)	scaffold_249:17819-19143(+) (11)//scaffold_4:2386499-2387823(-) (11)	NA	Q42093	ABC transporter C family member 2	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.3043.1.S1_s_at	A	A1TS	POPTR_0001s07400	POPTR_0001s07400 (11)	scaffold_1:5569711-5570058(-) (11)	NA	O24145	4-coumarate--CoA ligase 1	AT3G21240.1	4-coumarate:CoA ligase 2 	LOC_Os02g08100.1	"AMP-binding domain containing protein, expressed"	Medtr4g023340.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3044.1.S1_s_at	A	A1TS	POPTR_0017s04710	POPTR_0017s04710 (11)	scaffold_17:3612748-3613147(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3045.1.S1_at	A	A1TS	POPTR_0004s19960	POPTR_0004s19960 (11)	scaffold_4:19616949-19617106(+) (11)	NA	Q9SGD6	"Arogenate dehydratase/prephenate dehydratase 6, chloroplastic"	AT1G08250.1	arogenate dehydratase 6 	LOC_Os04g33390.1	"prephenate dehydratase domain containing protein, expressed"	Medtr4g073340.1	Prephenate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process	GO:0004664|prephenate dehydratase activity	NA
Ptp.3045.1.S1_s_at	A	A1TS	POPTR_0004s19960	POPTR_0004s19960 (11)	scaffold_4:19617202-19617498(+) (11)	NA	Q9SGD6	"Arogenate dehydratase/prephenate dehydratase 6, chloroplastic"	AT1G08250.1	arogenate dehydratase 6 	LOC_Os04g33390.1	"prephenate dehydratase domain containing protein, expressed"	Medtr4g073340.1	Prephenate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process	GO:0004664|prephenate dehydratase activity	NA
Ptp.3046.1.S1_at	A	A1TS	POPTR_0002s15840	POPTR_0002s15840 (9)	scaffold_2:11803790-11804057(+) (9)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034860.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3046.2.S1_a_at	A	A1TS	POPTR_0002s15840	POPTR_0002s15840 (11)	scaffold_2:11800727-11800868(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034860.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3047.1.S1_at	A	A1TS	POPTR_0005s08010	POPTR_0005s08010 (11)	scaffold_5:5504937-5506265(-) (11)	NA	NA	NA	AT5G10150.1	Domain of unknown function (DUF966) 	LOC_Os03g09200.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g140340.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3049.1.S1_x_at	A	A1TS	POPTR_0006s13310	POPTR_0006s13310 (11)	scaffold_6:10534734-10534946(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.3050.1.S1_s_at	A	A1TS	POPTR_0014s11030	POPTR_0014s11030 (11)	scaffold_14:8224960-8225696(+) (11)	NA	Q8LC45	Probable xyloglucan endotransglucosylase/hydrolase protein 33	AT1G10550.1	xyloglucan:xyloglucosyl transferase 33 	LOC_Os10g02770.1	"glycosyl hydrolases family 16, putative, expressed"	CU633465_9.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal CU633465.7 82577-85450 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.3052.1.S1_s_at	A	A1TS	POPTR_0002s16740	POPTR_0002s16740 (11)	scaffold_2:12502963-12503305(-) (11)	NA	A4IFP3	Fatty acid desaturase 3	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	AC146568_19.1	"Zinc finger, C2H2-type; Fatty acid desaturase/sphingolipid desaturase AC146568.11 95455-93352 E EGN_Mt090430 200"	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0016491|oxidoreductase activity	NA
Ptp.3053.1.A1_s_at	A	A1TS	POPTR_0003s11350	POPTR_0003s11350 (10)	scaffold_3:12184267-12184356(+) (10)	NA	Q93YR3	FAM10 family protein At4g22670	AT4G22670.1	HSP70-interacting protein 1 	LOC_Os02g01030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3055.1.S1_s_at	A	A1TS	POPTR_0015s05370	POPTR_0015s05370 (11)	scaffold_15:5735896-5736422(+) (11)	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr6g080390.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
Ptp.3059.1.A1_s_at	A	A1TS	POPTR_0015s08900	POPTR_0015s08900 (11)	scaffold_15:10255220-10255487(-) (11)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.3059.2.A1_at	A	A1TS	POPTR_0015s08900	POPTR_0015s08900 (9)	scaffold_15:10255195-10255227(-) (9)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.3060.1.S1_at	A	A1TS	POPTR_0009s09040	POPTR_0009s09040 (11)	scaffold_9:8122814-8123175(-) (11)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.3061.1.S1_s_at	A	A1TS	POPTR_0018s04850	POPTR_0018s04850 (11)	scaffold_18:4230830-4234097(-) (11)	NA	Q5XD45	Putative hydrolase M6_Spy0533	AT2G25870.1	haloacid dehalogenase-like hydrolase family protein 	LOC_Os01g53720.2	expressed protein	Medtr1g008360.1	"Protein of unknown function UPF0054; HAD-superfamily hydrolase subfamily IIB; Zinc finger, C2H2-type "	GO:0008152|metabolic process	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.3062.1.S1_s_at	A	A1TS	POPTR_0008s02580	POPTR_0008s02580 (11)	scaffold_8:1273955-1273995(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT5G03680.1	Duplicated homeodomain-like superfamily protein 	LOC_Os10g37240.4	expressed protein	Medtr1g116980.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3064.1.S1_s_at	A	A1TS	POPTR_0008s16500	POPTR_0008s16500 (11)	scaffold_8:11077739-11077795(-) (11)	NA	NA	NA	AT1G04340.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3065.1.S1_s_at	A	A1TS	POPTR_0001s20740	POPTR_0001s20740 (11)	scaffold_1:18835393-18839630(-) (11)	NA	NA	NA	AT1G55160.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g51540.1	expressed protein	AC202568_8.1	Ras GTPase; Calcium-binding EF-hand AC202568.9 36216-39258 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3066.1.S1_s_at	A	A1TS	POPTR_0009s17030	POPTR_0009s17030 (11)	scaffold_9:12832705-12833400(-) (11)	NA	Q99JW2	Aminoacylase-1	AT4G38220.1	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046680.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.3067.1.S1_s_at	A	A1TS	POPTR_0003s04010	POPTR_0003s04010 (11)	scaffold_3:4629840-4630614(-) (11)	NA	O04373	IAA-amino acid hydrolase ILR1-like 4	AT1G51760.1	peptidase M20/M25/M40 family protein 	LOC_Os01g37960.1	"hydrolase, putative, expressed"	Medtr2g121800.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.3068.1.S1_at	A	A1TS	POPTR_0006s12330	POPTR_0006s12330 (11)	scaffold_6:9490700-9491607(-) (11)	NA	O95271	Tankyrase-1	AT3G09890.1	Ankyrin repeat family protein 	LOC_Os03g05260.1	"ankyrin repeat domain containing protein, expressed"	Medtr2g055950.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.307.1.S1_s_at	A	A1TS	POPTR_0014s01060	POPTR_0014s01060 (11)	scaffold_14:991019-991564(-) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT2G22620.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127450.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3071.1.S1_s_at	A	A1TS	POPTR_0002s21700	POPTR_0002s21700 (11)	scaffold_2:18254623-18255488(+) (11)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3072.1.S1_s_at	A	A1TS	POPTR_0006s09130	POPTR_0006s09130 (11)	scaffold_6:6751362-6752150(+) (11)	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os08g13930.2	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.3073.1.S1_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22927113-22927475(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3073.2.S1_a_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22928269-22928492(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3074.1.S1_at	A	A1TS	POPTR_0016s04450	POPTR_0016s04450 (11)	scaffold_16:2612335-2613279(-) (11)	NA	NA	NA	AT2G42080.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g28800.1	"heat shock protein DnaJ, putative"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3076.1.A1_s_at	A	A1TS	POPTR_0019s02670	POPTR_0019s02670 (11)	scaffold_19:2464944-2467055(-) (11)	NA	NA	NA	AT2G18465.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g59060.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3076.2.S1_s_at	A	A1TS	POPTR_0019s02670	POPTR_0019s02670 (11)	scaffold_19:2468043-2469739(-) (11)	NA	NA	NA	AT2G18465.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g59060.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3077.1.A1_s_at	A	A1TS	POPTR_0006s14340	POPTR_0006s14340 (11)	scaffold_6:11665582-11666918(-) (11)	NA	O65351	Subtilisin-like protease	AT2G05920.1	Subtilase family protein 	LOC_Os09g26920.1	"OsSub57 - Putative Subtilisin homologue, expressed"	Medtr2g049250.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.3078.1.S1_at	A	A1TS	POPTR_0015s07570	POPTR_0015s07570 (11)	scaffold_15:8850153-8850642(-) (11)	NA	Q8LGU7	Nuclear ribonuclease Z	AT1G74700.1	tRNAse Z1 	LOC_Os02g12290.1	"nuclear ribonuclease Z, putative"	Medtr5g092020.1	"Nuclear ribonuclease Z, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3079.1.S1_at	A	A1TS	POPTR_0006s20140	POPTR_0006s20140 (9)	scaffold_6:19198314-19200056(-) (9)	NA	Q54YG5	Trafficking protein particle complex subunit 5	AT5G58030.1	Transport protein particle (TRAPP) component 	LOC_Os01g51220.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr3g093070.1	"Transport protein particle (TRAPP) component, Bet3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.308.1.A1_s_at	A	A1TS	POPTR_0015s12070	POPTR_0015s12070 (11)	scaffold_15:12485096-12485865(+) (11)	NA	P29402	Calnexin homolog 1	AT5G61790.1	calnexin 1 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr3g151490.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.3080.2.S1_at	A	A1MS	POPTR_0010s14810	POPTR_0010s14810 (11)	scaffold_10:14286980-14287170(+) (11)	NA	Q9JHB5	Translin-associated protein X	AT2G03780.1	Translin family protein 	LOC_Os01g16100.1	"translin, putative, expressed"	Medtr8g077500.1	Translin 	NA	GO:0043565|sequence-specific DNA binding	NA
Ptp.3081.1.S1_s_at	A	A1TS	POPTR_0016s06480	POPTR_0016s06480 (11)	scaffold_16:4346079-4349328(+) (11)	NA	Q94AX4	"D-lactate dehydrogenase [cytochrome], mitochondrial"	AT5G06580.1	FAD-linked oxidases family protein 	LOC_Os07g06890.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.3082.1.S1_s_at	A	A1TS	POPTR_0010s17810	POPTR_0010s17810 (11)	scaffold_10:16263177-16263682(+) (11)	NA	A2Z9A6	UPF0496 protein 4	AT1G01550.2	Protein of unknown function (DUF793) 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3083.1.S1_s_at	A	A1TS	POPTR_0009s01730	POPTR_0009s01730 (11)	scaffold_9:2256596-2256688(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g47780.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3084.1.S1_s_at	A	A1TS	POPTR_0010s11840	POPTR_0010s11840 (11)	scaffold_10:11979570-11979796(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3085.1.S1_at	A	A1TS	POPTR_0012s11290	POPTR_0012s11290 (11)	scaffold_12:11792650-11792884(+) (11)	NA	P29402	Calnexin homolog 1	AT5G61790.1	calnexin 1 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr3g151490.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.3086.1.S1_s_at	A	A2TS	POPTR_0002s13630	POPTR_0002s13630 (11)//POPTR_0014s04320 (11)	scaffold_14:3369033-3370744(-) (11)//scaffold_2:10099362-10100827(-) (11)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.3087.1.S1_at	A	A1TS	POPTR_0006s19580	POPTR_0006s19580 (11)	scaffold_6:18623198-18623407(-) (11)	NA	Q9SWW6	Cellulose synthase A catalytic subunit 7 [UDP-forming]	AT5G17420.1	Cellulose synthase family protein 	LOC_Os09g25490.1	"CESA9 - cellulose synthase, expressed"	Medtr8g145000.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.3088.1.S1_at	A	A1TS	POPTR_0011s11320	POPTR_0011s11320 (9)	scaffold_11:14047678-14049343(+) (9)	NA	Q46948	Protein thiJ	AT1G53280.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os06g34040.1	"DJ-1 family protein, putative, expressed"	Medtr4g129930.1	ThiJ/PfpI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3089.1.S1_at	A	A1TS	POPTR_0019s09690	POPTR_0019s09690 (11)	scaffold_19:11302038-11303529(-) (11)	NA	O59729	Uncharacterized protein slp1	AT1G71360.1	Galactose-binding protein 	LOC_Os01g65520.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr4g032100.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.309.1.A1_s_at	A	A1TS	POPTR_0013s05500	POPTR_0013s05500 (11)	scaffold_13:3932840-3934102(+) (11)	NA	Q552J0	T-complex protein 1 subunit theta	AT3G03960.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g59020.1	"T-complex protein, putative, expressed"	Medtr6g030660.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.3090.1.A1_at	A	A1MS	POPTR_0014s01690	POPTR_0014s01690 (11)	scaffold_14:1581905-1581950(+) (11)	NA	Q37145	"Calcium-transporting ATPase 1, chloroplastic"	AT1G27770.1	autoinhibited Ca2+-ATPase 1 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.3091.1.S1_at	A	A1TS	POPTR_0001s16180	POPTR_0001s16180 (11)	scaffold_1:12999133-13000529(-) (11)	NA	Q9SSB5	26S protease regulatory subunit 7 homolog A	AT1G53750.1	regulatory particle triple-A 1A 	LOC_Os06g09290.1	"26S protease regulatory subunit 7, putative, expressed"	Medtr1g121600.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.3092.1.S1_at	A	A1TS	POPTR_0004s04400	POPTR_0004s04400 (11)	scaffold_4:3147790-3147909(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3092.1.S1_s_at	A	A1TS	POPTR_0004s04400	POPTR_0004s04400 (11)	scaffold_4:3147479-3147752(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3092.2.S1_s_at	A	A2TS	POPTR_0004s04400	POPTR_0004s04400 (11)//POPTR_0011s05280 (11)	scaffold_11:5155570-5155720(-) (11)//scaffold_4:3148655-3148805(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3093.1.A1_at	A	A1TS	POPTR_0010s24400	POPTR_0010s24400 (10)	scaffold_10:20632623-20633277(+) (10)	NA	A0JNC2	R3H domain-containing protein 2	AT3G10770.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr1g117280.1	Single-stranded nucleic acid binding R3H 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3094.1.S1_at	A	A1TS	POPTR_0008s07330	POPTR_0008s07330 (10)	scaffold_8:4487169-4487570(+) (10)	NA	NA	NA	AT2G40320.1	TRICHOME BIREFRINGENCE-LIKE 33 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr5g090760.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3095.1.S1_s_at	A	A1TS	POPTR_0002s24630	POPTR_0002s24630 (11)	scaffold_2:21945568-21946144(-) (11)	NA	Q6PD26	GPI transamidase component PIG-S	AT3G07180.1	GPI transamidase component PIG-S-related 	LOC_Os01g67960.1	"GPI transamidase component PIG-S-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3096.1.A1_s_at	A	A1TS	POPTR_0008s11730	POPTR_0008s11730 (11)	scaffold_8:7505262-7505759(-) (11)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	AC233660_2.1	Armadillo-like helical AC233660.2 13161-17702 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3097.1.S1_s_at	A	A1TS	POPTR_0009s07740	POPTR_0009s07740 (11)	scaffold_9:7198300-7198687(+) (11)	NA	Q68FD5	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os11g01380.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
Ptp.3098.1.S1_at	A	A1TS	POPTR_0008s06920	POPTR_0008s06920 (11)	scaffold_8:4163740-4167425(+) (11)	NA	O81488	PHD finger protein At5g26210	AT5G05610.2	alfin-like 1 	LOC_Os05g07040.1	"PHD finger protein, putative, expressed"	AC235756_22.1	"Zinc finger, FYVE/PHD-type AC235756.1 164740-161152 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.31.2.S1_s_at	A	A1TS	POPTR_0018s04840	POPTR_0018s04840 (11)	scaffold_18:4216403-4216749(+) (11)	NA	Q9LEI8	Profilin-6	AT4G29340.1	profilin 4 	LOC_Os10g17680.1	"profilin domain containing protein, expressed"	Medtr4g160100.1	Plant profilin 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	GO:0015629|actin cytoskeleton
Ptp.3102.1.S1_s_at	A	A1TS	POPTR_0001s13960	POPTR_0001s13960 (11)	scaffold_1:11002218-11002644(+) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3103.1.S1_at	A	A1TS	POPTR_0016s01990	POPTR_0016s01990 (9)	scaffold_16:918491-918967(+) (9)	NA	Q8L5Y5	Probable S-acyltransferase At4g15080	AT4G15080.1	DHHC-type zinc finger family protein 	LOC_Os09g38970.1	"zinc finger family protein, putative, expressed"	Medtr4g103680.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3105.1.S1_s_at	A	A1TS	POPTR_0012s11100	POPTR_0012s11100 (11)	scaffold_12:11686660-11687171(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G61840.1	Exostosin family protein 	LOC_Os01g70200.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.311.1.A1_at	A	A1TS	POPTR_0006s25290	POPTR_0006s25290 (11)	scaffold_6:23698338-23698824(-) (11)	NA	P40235	Casein kinase I homolog hhp1	AT2G25760.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g008170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3110.2.S1_a_at	A	A1TS	POPTR_0008s09930	POPTR_0008s09930 (11)	scaffold_8:6151272-6152102(-) (11)	NA	Q6E2Z6	1-Cys peroxiredoxin	AT1G48130.1	1-cysteine peroxiredoxin 1 	LOC_Os07g44430.1	"peroxiredoxin, putative"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.3111.1.A1_a_at	A	A1TS	POPTR_0001s21870	POPTR_0001s21870 (11)	scaffold_1:20348857-20348996(-) (11)	NA	Q8RY89	Phosphatidylinositol-4-phosphate 5-kinase 8	AT1G60890.2	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os03g49510.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g137550.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
Ptp.3112.1.S1_s_at	A	A1TS	POPTR_0002s16440	POPTR_0002s16440 (11)	scaffold_2:12299769-12300104(-) (11)	NA	Q49YU2	Diacylglycerol kinase	AT2G46090.1	Diacylglycerol kinase family protein 	LOC_Os03g03400.1	"diacylglycerol kinase, putative, expressed"	Medtr7g088910.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.3113.1.S1_at	A	A1TS	POPTR_0016s07280	POPTR_0016s07280 (11)	scaffold_16:5173512-5173675(-) (11)	NA	Q9C5R8	"2-Cys peroxiredoxin BAS1-like, chloroplastic"	AT5G06290.1	2-cysteine peroxiredoxin B 	LOC_Os02g33450.2	"peroxiredoxin, putative, expressed"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.3114.2.S1_s_at	A	A1TS	POPTR_0010s16620	POPTR_0010s16620 (11)	scaffold_10:15520001-15521295(-) (11)	NA	Q6DKC0	Erlin-2-B	AT2G03510.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os03g30790.1	"erlin-2 precursor, putative, expressed"	Medtr4g115350.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3115.1.S1_at	A	A1MS	POPTR_0003s02440	POPTR_0003s02440 (9)	scaffold_3:2525396-2525474(-) (9)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr2g126830.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3115.2.S1_a_at	A	A1TS	POPTR_0003s02440	POPTR_0003s02440 (11)	scaffold_3:2525146-2525304(-) (11)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr2g126830.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3115.2.S1_s_at	A	A1TS	POPTR_0003s02440	POPTR_0003s02440 (11)	scaffold_3:2526605-2527810(-) (11)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr2g126830.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3116.1.S1_at	A	A1TS	POPTR_0014s11480	POPTR_0014s11480 (9)	scaffold_14:8524901-8525225(+) (9)	NA	Q9S834	"ATP-dependent Clp protease proteolytic subunit 5, chloroplastic"	AT1G02560.1	nuclear encoded CLP protease 5 	LOC_Os03g19510.1	"OsClp4 - Putative Clp protease homologue, expressed"	Medtr1g106610.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.3117.1.A1_at	A	A1TS	POPTR_0017s06620	POPTR_0017s06620 (9)	scaffold_17:5029870-5029902(+) (9)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3117.1.A1_s_at	A	A1TS	POPTR_0017s06620	POPTR_0017s06620 (11)	scaffold_17:5030915-5031266(+) (11)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3118.1.S1_s_at	A	A2TS	POPTR_0001s07510	POPTR_0003s18540 (11)//POPTR_0001s07510 (11)	scaffold_1:5643661-5644228(+) (11)//scaffold_3:17585202-17585682(-) (11)	NA	Q84L33	Putative DNA repair protein RAD23-1	AT1G79650.2	Rad23 UV excision repair protein family 	LOC_Os02g08300.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
Ptp.312.1.S1_a_at	A	A1TS	POPTR_0006s15850	POPTR_0006s15850 (11)	scaffold_6:13524987-13525218(+) (11)	NA	Q9FH28	Chaperone protein dnaJ 49	AT3G57340.2	"Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) "	LOC_Os01g37560.3	"chaperone protein dnaJ 49, putative, expressed"	Medtr8g139780.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3120.1.S1_at	A	A1TS	POPTR_0002s01650	POPTR_0002s01650 (11)	scaffold_2:878461-878676(-) (11)	NA	Q96324	Glutathione S-transferase	AT3G03190.1	glutathione S-transferase F11 	LOC_Os03g04260.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3120.1.S1_x_at	A	A1TS	POPTR_0002s01650	POPTR_0002s01650 (11)	scaffold_2:878461-878727(-) (11)	NA	Q96324	Glutathione S-transferase	AT3G03190.1	glutathione S-transferase F11 	LOC_Os03g04260.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3122.1.S1_at	A	A1TS	POPTR_0010s25170	POPTR_0010s25170 (9)	scaffold_10:20983557-20983598(-) (9)	NA	P46302	40S ribosomal protein S28	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3122.1.S1_x_at	A	A1TS	POPTR_0010s25170	POPTR_0010s25170 (9)	scaffold_10:20983451-20984534(-) (9)	NA	P46302	40S ribosomal protein S28	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3125.1.S1_at	A	A1TA	POPTR_0011s04780	POPTR_0011s04780 (9)	scaffold_11:4750874-4752362(-) (9)	NA	P34914	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3125.3.S1_s_at	A	A1TS	POPTR_0011s04780	POPTR_0011s04780 (11)	scaffold_11:4752385-4752780(+) (11)	NA	P34914	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3126.1.S1_s_at	A	A1TS	POPTR_0001s22620	POPTR_0001s22620 (11)	scaffold_1:21514545-21515245(-) (11)	NA	P19950	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os02g06700.1	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.313.1.A1_s_at	A	A1TS	POPTR_0013s10050	POPTR_0013s10050 (11)	scaffold_13:10027610-10028370(-) (11)	NA	P35136	D-3-phosphoglycerate dehydrogenase	AT1G72190.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os07g16040.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr3g013440.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.313.2.S1_s_at	A	A1TS	POPTR_0013s10050	POPTR_0013s10050 (11)	scaffold_13:10032129-10032866(-) (11)	NA	P35136	D-3-phosphoglycerate dehydrogenase	AT1G72190.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os07g16040.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr3g013440.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.313.3.A1_s_at	A	A1TS	POPTR_0013s10050	POPTR_0013s10050 (11)	scaffold_13:10027479-10027541(-) (11)	NA	P35136	D-3-phosphoglycerate dehydrogenase	AT1G72190.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os07g16040.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr3g013440.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.3130.1.S1_s_at	A	A1TS	POPTR_0006s21680	POPTR_0006s21680 (11)	scaffold_1402:5688-5729(-) (11)//scaffold_6:20704360-20704401(+) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr3g114720.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3132.1.S1_s_at	A	A1TS	POPTR_0002s18420	POPTR_0002s18420 (11)	scaffold_2:14353339-14353819(-) (11)	NA	O23680	"Translocase of chloroplast 33, chloroplastic"	AT1G02280.2	translocon at the outer envelope membrane of chloroplasts 33 	LOC_Os03g13730.1	"translocase of chloroplast 34, putative, expressed"	Medtr7g104820.1	Chloroplast protein import component Toc34 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3132.2.S1_s_at	A	A1TS	POPTR_0002s18420	POPTR_0002s18420 (11)	scaffold_2:14357041-14357565(-) (11)	NA	O23680	"Translocase of chloroplast 33, chloroplastic"	AT1G02280.2	translocon at the outer envelope membrane of chloroplasts 33 	LOC_Os03g13730.1	"translocase of chloroplast 34, putative, expressed"	Medtr7g104820.1	Chloroplast protein import component Toc34 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3133.1.S1_s_at	A	A1TS	POPTR_0009s13590	POPTR_0009s13590 (11)	scaffold_9:10793915-10794041(+) (11)	NA	O65351	Subtilisin-like protease	AT4G34980.1	subtilisin-like serine protease 2 	LOC_Os03g13930.1	"OsSub28 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.3135.1.S1_at	A	A1TS	POPTR_0001s47450	POPTR_0001s47450 (10)	scaffold_1:47650766-47651004(-) (10)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.3136.1.S1_at	A	A1TS	POPTR_0014s04880	POPTR_0014s04880 (10)	scaffold_14:3766575-3767245(-) (10)	NA	P39207	Nucleoside diphosphate kinase 1	AT4G09320.1	Nucleoside diphosphate kinase family protein 	LOC_Os10g41410.2	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
Ptp.3138.2.A1_a_at	A	A1TS	POPTR_0009s13580	POPTR_0009s13580 (11)	scaffold_9:10779737-10780056(-) (11)	NA	Q9SBQ8	Kaempferol 3-O-beta-D-galactosyltransferase	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128440.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008152|metabolic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.314.1.A1_at	A	A1TS	POPTR_0018s09570	POPTR_0018s09570 (11)	scaffold_18:10509282-10513455(+) (11)	NA	Q9LVC8	"Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial"	AT5G57300.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g74520.1	"methyltransferase domain containing protein, putative, expressed"	Medtr4g005810.1	UbiE/COQ5 methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.3142.1.A1_at	A	A1TS	POPTR_0002s10430	POPTR_0002s10430 (11)	scaffold_2:7525053-7525782(+) (11)	NA	NA	NA	AT4G24610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). 	LOC_Os02g52280.1	expressed protein	Medtr5g074970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3143.2.S1_a_at	A	A1TS	POPTR_0006s10950	POPTR_0006s10950 (11)	scaffold_6:8321489-8321528(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3143.2.S1_at	A	A1MS	POPTR_0006s10950	POPTR_0006s10950 (11)	scaffold_6:8321143-8321431(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3145.1.S1_s_at	A	A1TA	POPTR_0010s18940	POPTR_0010s18940 (11)	scaffold_10:17025621-17025969(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3147.2.S1_a_at	A	A2TS	POPTR_0014s01860	POPTR_0014s17560 (11)//POPTR_0014s01860 (11)	scaffold_14:1708648-1709219(-) (11)//scaffold_14:13807852-13808426(-) (11)	NA	P33642	Probable D-amino acid oxidase PA4548	AT5G48440.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g33900.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr7g046700.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3148.1.S1_s_at	A	A1MS	POPTR_0014s17010	POPTR_0014s17010 (11)	scaffold_14:13197062-13197459(+) (11)	NA	Q8LPQ9	Flowering time control protein FPA	AT4G12640.1	RNA recognition motif (RRM)-containing protein 	LOC_Os09g12730.2	"RNA recognition motif containing protein, expressed"	Medtr3g111300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.315.1.A1_at	A	A1TS	POPTR_0013s08350	POPTR_0013s08350 (11)	scaffold_13:7434745-7434794(+) (11)	NA	Q9FFE0	Regulator of ribonuclease-like protein 2	AT5G16450.2	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os01g52460.2	"regulator of ribonuclease, putative, expressed"	Medtr7g089680.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3160.1.S1_at	A	A1TS	POPTR_0007s13560	POPTR_0007s13560 (11)	scaffold_7:13607539-13607655(-) (11)	NA	Q9H0R3	Transmembrane protein 222	AT3G51040.3	RTE1-homolog 	LOC_Os03g58520.1	"green ripe-like, putative, expressed"	Medtr5g021070.1	Protein of unknown function DUF778 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3161.1.S1_s_at	A	A1TS	POPTR_0017s12810	POPTR_0017s12810 (11)	scaffold_17:12991782-12992832(+) (11)	NA	Q9LLC1	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic"	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	AC231342_10.1	Biotin-binding site AC231342.3 52802-49143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3162.1.S1_at	A	A1TA	POPTR_0002s17680	POPTR_0002s17680 (10)	scaffold_2:13491963-13492435(+) (10)	NA	P46897	Homeobox-leucine zipper protein ATHB-7	AT2G46680.1	homeobox 7 	LOC_Os09g35910.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g029340.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.3167.1.S1_at	A	A1TS	POPTR_0008s11840	POPTR_0008s11840 (11)	scaffold_8:7580856-7581228(-) (11)	NA	Q84L30	Putative DNA repair protein RAD23-4	AT5G38470.1	Rad23 UV excision repair protein family 	LOC_Os09g24200.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
Ptp.3170.2.A1_at	A	A1TA	POPTR_0002s06280	POPTR_0002s06280 (10)	scaffold_2:4197666-4198191(-) (11)	NA	NA	NA	AT5G36120.1	"cofactor assembly, complex C (B6F) "	LOC_Os01g73540.1	"YGGT family protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
Ptp.3171.1.S1_s_at	A	A1TS	POPTR_0014s12350	POPTR_0014s12350 (11)	scaffold_14:9117894-9119616(+) (11)	NA	NA	NA	AT3G62880.2	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	NA	NA	Medtr1g108360.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.3173.1.S1_s_at	A	A1TS	POPTR_0007s06650	POPTR_0007s06650 (11)	scaffold_7:5047032-5047789(+) (11)	NA	Q5ZID2	Programmed cell death protein 2-like	AT5G64830.1	programmed cell death 2 C-terminal domain-containing protein 	LOC_Os04g54820.1	"programmed cell death 2 C-terminal domain-containing protein, putative, expressed"	Medtr3g144680.1	"Programmed cell death protein 2, C-terminal "	NA	NA	GO:0005737|cytoplasm
Ptp.3178.1.S1_at	A	A1TS	POPTR_0006s16020	POPTR_0006s16020 (9)	scaffold_6:13800782-13801419(+) (9)	NA	Q9FM64	"Pentatricopeptide repeat-containing protein At5g55740, chloroplastic"	AT5G55740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g42280.1	"pentatricopeptide, putative, expressed"	Medtr8g077950.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3179.1.S1_at	A	A1TS	POPTR_0002s07830	POPTR_0002s07830 (10)	scaffold_2:5386262-5387966(+) (10)	POPTR_0002s07850 (7)	Q8DHU4	Protein translocase subunit secA	AT1G21650.2	Preprotein translocase SecA family protein 	LOC_Os11g08980.1	"preprotein translocase secA family protein, putative, expressed"	Medtr1g105810.1	SecA protein 	GO:0017038|protein import	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane
Ptp.3180.1.S1_x_at	A	A1TS	POPTR_0002s09610	POPTR_0002s09610 (11)	scaffold_2:6883468-6884176(-) (11)	NA	Q9SYT0	Annexin D1	AT1G35720.1	annexin 1 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
Ptp.3186.1.S1_a_at	A	A1TS	POPTR_0002s10930	POPTR_0002s10930 (11)	scaffold_2:7984659-7985370(+) (11)	NA	NA	NA	AT2G17280.2	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g121830.1	"phosphoglycerate mutase-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3188.1.S1_s_at	A	A1TS	POPTR_0002s05130	POPTR_0002s05130 (11)	scaffold_2:3329135-3329868(+) (11)	NA	Q9ZQI8	Non-specific lipid-transfer protein-like protein At2g13820	AT3G22600.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g57990.1	"LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g007090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.319.1.A1_at	A	A1TS	POPTR_0018s03440	POPTR_0018s03440 (11)	scaffold_18:3013348-3014374(-) (11)	NA	NA	NA	AT4G31570.1	CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). 	LOC_Os02g05490.1	expressed protein	Medtr1g010620.1	Prefoldin 	GO:0016032|viral reproduction	NA	NA
Ptp.3190.1.S1_s_at	A	A1TS	POPTR_0004s15080	POPTR_0004s15080 (11)	scaffold_4:15753001-15753214(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT3G19130.1	RNA-binding protein 47B 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g129250.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3190.3.A1_at	A	A1TA	POPTR_0004s15080	POPTR_0004s15080 (11)	scaffold_4:15753094-15753394(-) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT3G19130.1	RNA-binding protein 47B 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g129250.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3195.1.S1_s_at	A	A1TS	POPTR_0002s04640	POPTR_0002s04640 (11)	scaffold_2:2900429-2901880(+) (11)	NA	P42390	"Indole-3-glycerol phosphate lyase, chloroplastic"	AT3G54640.1	tryptophan synthase alpha chain 	LOC_Os07g08430.1	"indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006568|tryptophan metabolic process	GO:0004834|tryptophan synthase activity	NA
Ptp.3197.1.S1_at	A	A1TS	POPTR_0001s45530	POPTR_0001s45530 (11)	scaffold_1:46036221-46036991(-) (11)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.320.1.S1_at	A	A1TS	POPTR_0010s15740	POPTR_0010s15740 (9)	scaffold_10:14862852-14863190(+) (9)	NA	P57741	Probable prefoldin subunit 3	AT5G49510.2	prefoldin 3 	LOC_Os12g37590.1	"prefoldin, putative, expressed"	Medtr2g037940.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.3200.1.S1_s_at	A	A1TS	POPTR_0005s11690	POPTR_0005s11690 (11)	scaffold_5:8519270-8520031(-) (11)	NA	Q3TSG4	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3204.1.S1_at	A	A1MS	POPTR_0009s03880	POPTR_0009s03880 (10)	scaffold_9:4445507-4446211(-) (10)	NA	Q8VZI8	"ATP-dependent zinc metalloprotease FTSH 10, mitochondrial"	AT1G07510.1	FTSH protease 10 	LOC_Os05g38400.1	"OsFtsH8  FtsH protease, homologue of AtFtsH3/10, expressed"	Medtr4g084650.1	"AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.3205.1.S1_at	A	A1TS	POPTR_0005s18330	POPTR_0005s18330 (10)	scaffold_5:16476973-16477938(-) (10)	POPTR_0007s10840 (8)	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT5G67130.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os09g02729.1	"phospholipase C, putative, expressed"	Medtr5g016790.1	"Carbohydrate kinase, FGGY; Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.321.1.S1_a_at	A	A1TS	POPTR_0012s10340	POPTR_0012s10340 (11)	scaffold_12:11147956-11148413(+) (11)	NA	Q9FED2	HVA22-like protein e	AT5G50720.1	HVA22 homologue E 	LOC_Os11g30500.1	"HVA22, putative, expressed"	Medtr3g150830.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.321.2.S1_at	A	A1MS	POPTR_0012s10340	POPTR_0012s10340 (11)	scaffold_12:11147591-11148445(+) (11)	NA	Q9FED2	HVA22-like protein e	AT5G50720.1	HVA22 homologue E 	LOC_Os11g30500.1	"HVA22, putative, expressed"	Medtr3g150830.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3210.1.S1_at	A	A1TS	POPTR_0019s08980	POPTR_0019s08980 (11)	scaffold_19:10584604-10585163(+) (11)	NA	Q2V0W1	Pheophorbidase	AT3G10870.1	methyl esterase 17 	LOC_Os12g02500.1	"esterase, putative, expressed"	Medtr5g076890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3212.1.S1_at	A	A1TS	POPTR_0011s00310	POPTR_0011s00310 (11)	scaffold_11:99196-99709(+) (11)	NA	NA	NA	AT4G21215.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr5g005770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3214.1.A1_s_at	A	A1TS	POPTR_0006s28230	POPTR_0006s28230 (11)	scaffold_6:25985731-25986227(-) (11)	NA	Q9SM44	"Monogalactosyldiacylglycerol synthase, chloroplastic"	AT4G31780.2	monogalactosyl diacylglycerol synthase 1 	LOC_Os09g25580.1	"monogalactosyldiacylglycerol synthase, putative, expressed"	AC235758_1.1	"Glycosyltransferase 28, C-terminal; Monogalactosyldiacylglycerol synthase AC235758.1 7116-1932 E EGN_Mt090430 200"	GO:0009247|glycolipid biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.3214.2.S1_s_at	A	A1TS	POPTR_0006s28230	POPTR_0006s28230 (11)	scaffold_6:25989569-25989933(-) (11)	NA	Q9SM44	"Monogalactosyldiacylglycerol synthase, chloroplastic"	AT4G31780.2	monogalactosyl diacylglycerol synthase 1 	LOC_Os09g25580.1	"monogalactosyldiacylglycerol synthase, putative, expressed"	AC235758_1.1	"Glycosyltransferase 28, C-terminal; Monogalactosyldiacylglycerol synthase AC235758.1 7116-1932 E EGN_Mt090430 200"	GO:0009247|glycolipid biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.3215.2.S1_at	A	A1TS	POPTR_0004s01690	POPTR_0004s01690 (11)	scaffold_4:1020046-1021312(-) (11)	NA	O13759	RNA-binding post-transcriptional regulator csx1	AT1G11650.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g37270.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3217.1.A1_at	A	A1TS	POPTR_0001s30350	POPTR_0001s30350 (10)	scaffold_1:28851071-28851557(+) (10)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g39090.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3217.2.S1_at	A	A1TS	POPTR_0001s30350	POPTR_0001s30350 (10)	scaffold_1:28850270-28850597(+) (10)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g39090.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3218.1.S1_at	A	A1TS	POPTR_0014s04920	POPTR_0014s04920 (9)	scaffold_14:3810930-3811309(+) (9)	NA	Q8LPS6	Pentatricopeptide repeat-containing protein At1g02150	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g46010.1	"PPR repeat domain containing protein, putative, expressed"	AC202489_31.1	Pentatricopeptide repeat AC202489.10 131297-133733 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3221.1.S1_s_at	A	A1TS	POPTR_0019s09670	POPTR_0019s09670 (11)	scaffold_19:11271242-11271319(-) (11)	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.3225.1.S1_s_at	A	A1TS	POPTR_0008s03540	POPTR_0008s03540 (11)	scaffold_8:1893203-1894691(-) (11)	NA	P35159	Ribosomal large subunit pseudouridine synthase B	AT2G39140.1	pseudouridine synthase family protein 	LOC_Os03g05806.1	"pseudouridine synthase family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.3227.1.S1_s_at	A	A1TS	POPTR_0011s14270	POPTR_0011s14270 (11)	scaffold_11:16733055-16735347(+) (11)	NA	Q147X3	"N-alpha-acetyltransferase 30, NatC catalytic subunit"	AT2G38130.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os11g32280.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g097190.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.3228.1.A1_a_at	A	A1TS	POPTR_0007s11470	POPTR_0007s11470 (11)	scaffold_7:11837295-11837402(-) (11)	NA	Q9FGT7	Two-component response regulator ARR18	AT4G37180.1	Homeodomain-like superfamily protein 	LOC_Os03g55590.1	"MYB family transcription factor, putative, expressed"	Medtr5g017970.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.323.1.S1_s_at	A	A3TS	POPTR_0005s11570	POPTR_0005s11600 (11)//POPTR_0005s11570 (11)//POPTR_0005s11610 (11)	scaffold_5:8399496-8400129(-) (11)//scaffold_5:8410000-8410624(-) (11)//scaffold_5:8417845-8418468(-) (11)	POPTR_1289s00200 (6)	Q07353	"Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)"	AT3G51240.2	flavanone 3-hydroxylase 	LOC_Os04g56700.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr8g089960.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3232.1.S1_at	A	A1TS	POPTR_0007s14760	POPTR_0007s14760 (10)	scaffold_7:14517934-14519637(+) (10)	NA	NA	NA	AT5G65880.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr8g101930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3235.1.S1_at	A	A1TS	POPTR_0001s39580	POPTR_0001s39580 (9)	scaffold_1:38784922-38785273(-) (9)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3238.1.S1_s_at	A	A1TS	POPTR_0007s15300	POPTR_0007s15300 (11)	scaffold_7:14881064-14881413(+) (11)	NA	NA	NA	AT3G19990.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). "	LOC_Os02g58150.1	expressed protein	Medtr1g047000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3242.1.S1_s_at	A	A1TS	POPTR_0004s05770	POPTR_0004s05770 (11)	scaffold_4:4529402-4530522(+) (11)	NA	Q39011	Shaggy-related protein kinase eta	AT4G18710.1	Protein kinase superfamily protein 	LOC_Os05g11730.1	"CGMC_GSK.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g097890.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3244.1.S1_at	A	A1TS	POPTR_0006s04290	POPTR_0006s04290 (9)	scaffold_6:2933450-2933486(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3245.1.S1_s_at	A	A1TS	POPTR_0017s06840	POPTR_0017s06840 (11)	scaffold_17:5221289-5221854(+) (11)	NA	O64407	Beta-amylase	AT4G15210.1	beta-amylase 5 	LOC_Os07g35940.1	"beta-amylase, putative"	Medtr2g103430.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.3246.1.S1_x_at	A	A1TS	POPTR_0005s26930	POPTR_0005s26930 (11)	scaffold_5:24773907-24774072(-) (11)	NA	P42759	Dehydrin ERD10	AT1G20450.1	Dehydrin family protein 	NA	NA	Medtr3g162880.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
Ptp.325.1.A1_s_at	A	A1TS	POPTR_0002s17570	POPTR_0002s17570 (10)	scaffold_2:13358744-13359160(+) (10)	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3250.1.S1_s_at	A	A1TS	POPTR_0016s05520	POPTR_0016s05520 (11)	scaffold_16:3457642-3458014(+) (11)	NA	Q941L0	Cellulose synthase A catalytic subunit 3 [UDP-forming]	AT5G05170.1	Cellulose synthase family protein 	LOC_Os07g10770.1	"CESA8 - cellulose synthase, expressed"	Medtr3g029130.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.3252.1.S1_s_at	A	A1TS	POPTR_0012s10140	POPTR_0012s10140 (11)	scaffold_12:10960609-10962332(-) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT5G50530.1	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os01g69900.1	"CBS domain-containing protein, putative, expressed"	Medtr3g150700.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3254.1.S1_at	A	A1TS	POPTR_0006s21210	POPTR_0006s21210 (11)	scaffold_6:20307002-20307573(+) (11)	NA	P51427	40S ribosomal protein S5-2	AT3G11940.2	ribosomal protein 5A 	LOC_Os11g29190.2	"40S ribosomal protein S5, putative, expressed"	AC235488_12.1	Ribosomal protein S7 AC235488.1 52998-48408 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3258.1.S1_at	A	A1TS	POPTR_0008s07870	POPTR_0008s07870 (9)	scaffold_8:4834038-4834499(-) (9)	NA	Q84W55	"Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3"	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3259.2.S1_a_at	A	A1TS	POPTR_0006s26180	POPTR_0006s26180 (11)	scaffold_6:24453418-24454491(-) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G25560.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os01g52110.5	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr3g135900.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3259.3.S1_at	A	A1TA	POPTR_0006s26185	POPTR_0006s26185 (11)	scaffold_6:24456436-24456806(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3262.1.S1_at	A	A1TS	POPTR_0015s10740	POPTR_0015s10740 (9)	scaffold_15:11570788-11571798(+) (9)	NA	Q5ZI43	Snurportin-1	AT4G24880.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g01130.1	"snurportin-1, putative, expressed"	Medtr3g117620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3269.1.S1_s_at	A	A1TS	POPTR_0005s02030	POPTR_0005s02030 (11)	scaffold_5:1325957-1326139(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
Ptp.327.1.S1_at	A	A1TS	POPTR_0001s10940	POPTR_0001s10940 (9)	scaffold_1:8485237-8486898(+) (9)	NA	Q9SGW3	26S proteasome non-ATPase regulatory subunit RPN12A	AT1G64520.1	regulatory particle non-ATPase 12A 	LOC_Os07g25420.1	"26S proteasome non-ATPase regulatory subunit 8, putative, expressed"	Medtr1g020820.1	SAC3/GANP; 26S proteasome non-ATPase regulatory subunit Nin1/mts3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3277.1.S1_s_at	A	A2TS	POPTR_0007s05890	POPTR_0007s05910 (11)//POPTR_0007s05890 (11)	scaffold_7:4055868-4056412(+) (11)//scaffold_7:4067154-4067699(+) (11)	NA	P24792	L-ascorbate oxidase	AT4G39830.1	Cupredoxin superfamily protein 	LOC_Os09g20090.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.328.1.A1_at	A	A1TS	POPTR_0003s12670	POPTR_0003s12670 (10)	scaffold_3:13187718-13188581(+) (10)	NA	P41230	Lysine-specific demethylase 5C	AT1G63490.1	transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	Medtr5g010400.1	"transcription factor jumonji, related "	NA	NA	GO:0005634|nucleus
Ptp.3281.1.S1_at	A	A1TS	POPTR_0006s27320	POPTR_0006s27320 (11)	scaffold_6:25264933-25266153(+) (11)	NA	Q8VY97	UPF0480 protein At4g32130	AT2G25310.1	Protein of unknown function (DUF2012) 	LOC_Os06g43650.2	"secreted salivary protein, putative, expressed"	Medtr3g137720.1	Carbohydrate-binding-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3282.1.A1_s_at	A	A1TS	POPTR_0004s18610	POPTR_0004s18610 (11)	scaffold_4:18446799-18447141(-) (11)	NA	Q39108	"Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic"	AT4G38460.1	geranylgeranyl reductase 	LOC_Os02g44780.3	"polyprenyl synthetase, putative, expressed"	AC146550_1.1	Polyprenyl synthetase AC146550.40 4-1850 E EGN_Mt090430 200	GO:0008299|isoprenoid biosynthetic process	NA	NA
Ptp.3284.1.S1_at	A	A1TS	POPTR_0003s05000	POPTR_0003s05000 (10)	scaffold_3:6152655-6154246(+) (10)	NA	Q9CA86	Peroxisome assembly protein 2	AT1G79810.1	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g19480.1	"peroxisome assembly protein, putative, expressed"	Medtr8g015150.1	"Zinc finger, RING-type; Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
Ptp.3284.1.S1_s_at	A	A2TS	POPTR_0001s18670	POPTR_0003s05000 (11)//POPTR_0001s18670 (11)	scaffold_1:15755451-15756832(-) (11)//scaffold_3:6152570-6153984(+) (11)	NA	Q9CA86	Peroxisome assembly protein 2	AT1G79810.1	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g19480.1	"peroxisome assembly protein, putative, expressed"	Medtr8g015150.1	"Zinc finger, RING-type; Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
Ptp.3285.1.S1_at	A	A1TS	POPTR_0016s03740	POPTR_0016s03740 (11)	scaffold_16:2080611-2081810(-) (11)	NA	P94111	Strictosidine synthase 1	AT3G57030.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g53950.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
Ptp.3289.1.A1_at	A	A1TS	POPTR_0004s02500	POPTR_0004s02500 (9)	scaffold_4:1652711-1653266(+) (9)	POPTR_0004s01260 (6)	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35580.1	"TKL_IRAK_DUF26-lc.20 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.329.1.S1_s_at	A	A1TS	POPTR_0016s02020	POPTR_0016s02020 (11)	scaffold_16:957255-957679(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
Ptp.329.2.S1_at	A	A1MS	POPTR_0016s02020	POPTR_0016s02020 (11)	scaffold_16:955916-955979(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
Ptp.3290.2.S1_a_at	A	A1TS	POPTR_0007s07760	POPTR_0007s07760 (11)	scaffold_7:6181830-6181870(-) (11)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.3290.3.S1_at	A	A1MS	POPTR_0007s07760	POPTR_0007s07760 (10)	scaffold_7:6181696-6181835(-) (10)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.3291.1.A1_s_at	A	A1TS	POPTR_0010s21460	POPTR_0010s21460 (11)	scaffold_10:18726190-18728063(-) (11)	NA	NA	NA	AT5G59613.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). 	LOC_Os03g40920.1	expressed protein	Medtr2g114440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3293.1.S1_s_at	A	A2TS	POPTR_0002s06660	POPTR_0002s06660 (11)//POPTR_0005s21660 (11)	scaffold_2:4469169-4469218(-) (11)//scaffold_5:20770129-20770178(+) (11)	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.3	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3295.1.S1_at	A	A1TS	POPTR_0013s01710	POPTR_0013s01710 (9)	scaffold_13:970945-973497(-) (9)	NA	NA	NA	AT3G05545.1	RING/U-box superfamily protein 	LOC_Os05g06270.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3296.1.S1_s_at	A	A1TS	POPTR_0007s14960	POPTR_0007s14960 (11)	scaffold_14:976708-976756(-) (10)//scaffold_7:14631120-14631686(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.3296.2.S1_s_at	A	A1TS	POPTR_0007s14960	POPTR_0007s14960 (11)	scaffold_7:14628721-14630168(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.3298.1.A1_s_at	A	A1TS	POPTR_0009s03020	POPTR_0009s03020 (11)	scaffold_9:3741311-3741943(+) (11)	NA	Q9ZPW9	Non-specific lipid-transfer protein 8	AT2G18370.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g34840.1	"LTPL5 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr2g080460.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.33.1.S1_at	A	A1TS	POPTR_0010s06700	POPTR_0010s06700 (11)	scaffold_10:7986750-7987008(+) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.33.2.S1_s_at	A	A2TS	POPTR_0008s17840	POPTR_0008s17840 (11)//POPTR_0010s06700 (11)	scaffold_10:7986472-7986674(+) (11)//scaffold_8:11975577-11975779(-) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.330.1.A1_s_at	A	A1TS	POPTR_0003s08300	POPTR_0003s08300 (11)	scaffold_3:9696141-9696527(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.4	casein kinase II  beta chain 1 	LOC_Os10g41520.2	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.3303.1.S1_at	A	A1TS	POPTR_0009s02250	POPTR_0009s02250 (9)	scaffold_9:2967079-2967380(-) (10)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3308.1.S1_s_at	A	A2TS	POPTR_0008s11410	POPTR_0010s02840 (9)//POPTR_0008s11410 (9)	scaffold_10:3337976-3338356(+) (9)//scaffold_8:7247387-7247913(-) (9)	NA	NA	NA	AT3G21550.1	DUF679 domain membrane protein 2 	LOC_Os03g25440.1	expressed protein	Medtr2g025940.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.331.1.S1_at	A	A1TS	POPTR_0014s12440	POPTR_0014s12440 (11)	scaffold_14:9176713-9178589(+) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT1G02840.3	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr8g068270.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3313.1.S1_s_at	A	A1TS	POPTR_0009s05870	POPTR_0009s05870 (11)	scaffold_9:5838329-5838476(-) (11)	NA	Q9C6I8	Probable nucleolar GTP-binding protein 1	AT1G50920.1	Nucleolar GTP-binding protein 	LOC_Os07g01920.1	"nucleolar GTP-binding protein 1, putative, expressed"	Medtr8g021130.1	"Nucleolar GTP-binding 1; NOG, C-terminal "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3318.1.A1_at	A	A1TS	POPTR_0010s18600	POPTR_0010s18600 (11)	scaffold_10:16803959-16804375(-) (11)	NA	Q9FIW4	Beta-glucosidase 42	AT5G36890.1	beta glucosidase 42 	LOC_Os01g67220.2	"Os1bglu4 - beta-glucosidase-like protein without signal sequence, expressed"	Medtr3g040460.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3320.1.S1_at	A	A1TS	POPTR_0010s17190	POPTR_0010s17190 (11)	scaffold_10:15889084-15890854(-) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
Ptp.3320.1.S1_s_at	A	A1TS	POPTR_0010s17190	POPTR_0010s17190 (11)	scaffold_10:15888823-15888938(-) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
Ptp.3320.1.S1_x_at	A	A1TS	POPTR_0010s17190	POPTR_0010s17190 (11)	scaffold_10:15888861-15890854(-) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
Ptp.3322.1.S1_at	A	A1TS	POPTR_0007s11530	POPTR_0007s11530 (10)	scaffold_7:11892034-11892309(-) (10)	NA	Q9FKZ1	Probable disease resistance protein At5g66900	AT5G66900.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os12g39620.2	"disease resistance protein, putative, expressed"	Medtr5g018040.1	NB-ARC; Arabidopsis broad-spectrum mildew resistance 	NA	GO:0005515|protein binding	NA
Ptp.3323.1.S1_s_at	A	A1TS	POPTR_0003s15040	POPTR_0003s15040 (11)	scaffold_3:14942532-14943033(+) (11)	NA	Q8VY90	Ethylene-responsive transcription factor ERF105	AT5G51190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3324.1.A1_a_at	A	A1TS	POPTR_0010s07490	POPTR_0010s07490 (11)	scaffold_10:8540568-8540841(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3325.1.S1_at	A	A1TS	POPTR_0001s04240	POPTR_0001s04240 (11)	scaffold_1:3349479-3350363(+) (11)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3325.3.A1_at	A	A1TA	POPTR_0003s21120	POPTR_0003s21120 (9)	scaffold_3:19401606-19401896(-) (9)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3327.1.S1_at	A	A1TS	POPTR_0015s14640	POPTR_0015s14640 (11)	scaffold_15:14167013-14167275(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010220.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.3327.1.S1_s_at	A	A1TS	POPTR_0015s14640	POPTR_0015s14640 (11)	scaffold_15:14167291-14167446(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010220.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.3328.1.S1_s_at	A	A1TS	POPTR_0016s03220	POPTR_0016s03220 (11)	scaffold_16:1639226-1639468(-) (11)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3328.2.S1_at	A	A1TS	POPTR_0016s03220	POPTR_0016s03220 (10)	scaffold_16:1641148-1641311(-) (10)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.333.1.S1_at	A	A1TS	POPTR_0003s11700	POPTR_0003s11700 (11)	scaffold_3:12496106-12496451(-) (11)	NA	Q9SZ69	Zinc finger A20 and AN1 domain-containing stress-associated protein 7	AT4G12040.2	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g087220.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.3332.1.S1_at	A	A1TS	POPTR_0006s22070	POPTR_0006s22070 (11)	scaffold_6:21091571-21091964(+) (11)	NA	Q9C615	Putative syntaxin-24	AT2G35980.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os04g58850.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr8g139130.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
Ptp.3333.1.A1_s_at	A	A1TS	POPTR_0001s09830	POPTR_0001s09830 (11)	scaffold_1:7586231-7587323(+) (11)	NA	P92947	"Monodehydroascorbate reductase, chloroplastic"	AT1G63940.2	monodehydroascorbate reductase 6 	LOC_Os08g05570.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.3335.1.S1_s_at	A	A1TS	POPTR_0006s04930	POPTR_0006s04930 (11)	scaffold_6:3440426-3440775(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3336.1.S1_s_at	A	A1TS	POPTR_0012s07600	POPTR_0012s07600 (11)	scaffold_12:8509240-8511832(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g60950.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3337.1.S1_s_at	A	A1TS	POPTR_0019s13880	POPTR_0019s13880 (9)	scaffold_19:14754039-14754434(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3338.1.S1_s_at	A	A1TS	POPTR_0005s10830	POPTR_0005s10830 (11)	scaffold_5:7800504-7801151(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G35780.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3339.1.S1_s_at	A	A1TS	POPTR_0011s12650	POPTR_0011s12650 (11)	scaffold_11:15356554-15357515(+) (11)	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.334.1.A1_at	A	A1TS	POPTR_0019s03750	POPTR_0019s03750 (11)	scaffold_19:3847147-3847522(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT5G29000.2	Homeodomain-like superfamily protein 	LOC_Os03g21240.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.334.2.S1_at	A	A1TS	POPTR_0019s03750	POPTR_0019s03750 (9)	scaffold_19:3850162-3850560(-) (9)	NA	Q9SAK5	Myb family transcription factor APL	AT5G29000.2	Homeodomain-like superfamily protein 	LOC_Os03g21240.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3340.1.S1_s_at	A	A1TS	POPTR_0012s12900	POPTR_0012s12900 (11)	scaffold_12:13272751-13273358(+) (11)	NA	Q94AI4	Methyltransferase-like protein 1	AT4G09980.1	Methyltransferase MT-A70 family protein 	LOC_Os10g31030.1	"EMB1691, putative, expressed"	Medtr1g126680.1	N-6 Adenine-specific DNA methylase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008168|methyltransferase activity	NA
Ptp.3342.1.A1_at	A	A1TS	POPTR_0002s01830	POPTR_0002s01830 (11)	scaffold_2:973269-973454(-) (11)	NA	Q3ECD0	"RNA pseudourine synthase 2, chloroplastic"	AT1G76050.2	Pseudouridine synthase family protein 	LOC_Os06g50360.1	"pseudouridine synthase family protein, putative, expressed"	Medtr3g157130.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.3342.2.S1_at	A	A1TS	POPTR_0002s01830	POPTR_0002s01830 (11)	scaffold_2:974069-974868(-) (11)	NA	Q3ECD0	"RNA pseudourine synthase 2, chloroplastic"	AT1G76050.2	Pseudouridine synthase family protein 	LOC_Os06g50360.1	"pseudouridine synthase family protein, putative, expressed"	Medtr3g157130.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.3351.1.S1_s_at	A	A1TS	POPTR_0013s12680	POPTR_0013s12680 (11)	scaffold_13:13383448-13383488(+) (11)	NA	Q9P7W0	OPA3-like protein	AT1G28510.1	Optic atrophy 3 protein (OPA3) 	LOC_Os02g20844.1	expressed protein	Medtr2g018330.1	Optic atrophy 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3352.1.S1_s_at	A	A1TS	POPTR_0006s10980	POPTR_0006s10980 (11)	scaffold_6:8342022-8342414(+) (11)	NA	Q148K0	Transcription elongation factor A protein 2	AT2G38560.1	transcript elongation factor IIS 	LOC_Os03g60130.2	"transcription elongation factor protein, putative, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.3353.1.S1_s_at	A	A1TS	POPTR_0002s11310	POPTR_0002s11310 (11)	scaffold_2:8364247-8364638(-) (11)	NA	Q9FKP0	"50S ribosomal protein 6, chloroplastic"	AT5G17870.1	plastid-specific 50S ribosomal protein 6 	LOC_Os11g34940.1	"plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed"	Medtr3g127970.1	"Plastid-specific 50S ribosomal protein 6, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3354.1.A1_s_at	A	A1TS	POPTR_0005s00710	POPTR_0005s00710 (11)	scaffold_5:310185-310871(-) (11)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3359.1.S1_at	A	A1TS	POPTR_0019s00230	POPTR_0019s00230 (10)	scaffold_19:32095-32706(+) (10)//scaffold_261:14723-15341(+) (10)	NA	Q96282	Chloride channel protein CLC-c	AT5G49890.1	chloride channel C 	LOC_Os04g36560.2	"chloride channel protein, putative, expressed"	Medtr6g071480.1	"Cl- channel, voltage gated; Glycine betaine/L-proline transport ATP-binding subunit "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
Ptp.336.1.S1_at	A	A1TS	POPTR_0019s15110	POPTR_0019s15110 (11)	scaffold_19:15705582-15705759(-) (11)	NA	O24312	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3362.1.A1_s_at	A	A1TS	POPTR_0009s14520	POPTR_0009s14520 (11)	scaffold_9:11373847-11375072(+) (11)	NA	Q4V8J4	Glycerol-3-phosphate acyltransferase 3	AT5G60620.1	glycerol-3-phosphate acyltransferase 9 	LOC_Os07g34730.1	"acyltransferase, putative, expressed"	Medtr8g129160.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.3363.1.S1_s_at	A	A1TS	POPTR_0010s02390	POPTR_0010s02390 (11)	scaffold_10:2760765-2761358(-) (11)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr8g139200.1	DIRP; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3364.1.S1_at	A	A1MS	POPTR_0006s03850	POPTR_0006s03850 (11)	scaffold_6:2588436-2588826(+) (11)	NA	Q5ZJQ8	Ubiquitin-associated domain-containing protein 2	AT3G56740.1	Ubiquitin-associated (UBA) protein 	LOC_Os01g16330.1	"OsRhmbd2 - Putative Rhomboid homologue, expressed"	Medtr7g106540.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3365.2.A1_s_at	A	A1TS	POPTR_0013s01760	POPTR_0013s01760 (11)	scaffold_13:1000947-1001734(-) (11)	NA	Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G27730.1	Protein of unknown function (DUF1624) 	LOC_Os01g70550.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr7g138520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3367.1.S1_at	A	A1TS	POPTR_0011s14020	POPTR_0011s14020 (11)	scaffold_11:16615852-16615898(+) (11)	NA	NA	NA	AT5G54855.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os02g21280.1	"POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr3g068130.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3367.1.S1_s_at	A	A1TS	POPTR_0011s14020	POPTR_0011s14020 (11)	scaffold_11:16614061-16615649(+) (11)	NA	NA	NA	AT5G54855.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os02g21280.1	"POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr3g068130.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3368.1.S1_at	A	A1TS	POPTR_0012s13510	POPTR_0012s13510 (9)	scaffold_12:13637300-13637687(-) (9)	NA	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os10g35870.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.337.1.A1_at	A	A1TS	POPTR_0016s05240	POPTR_0016s05240 (11)	scaffold_16:3195050-3195548(+) (11)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os12g41180.1	"LSTK-1-like kinase, putative, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3370.1.S1_at	A	A1TS	POPTR_0006s09650	POPTR_0006s09650 (11)	scaffold_6:7088952-7089911(-) (11)	NA	Q9Y2M2	Uncharacterized protein C3orf32	AT2G38000.1	chaperone protein dnaJ-related 	LOC_Os05g25210.1	expressed protein	Medtr2g085150.1	"Uncharacterized protein C3orf32, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3372.1.S1_at	A	A1TS	POPTR_0006s22410	POPTR_0006s22410 (11)	scaffold_6:21428185-21428485(+) (11)	NA	NA	NA	AT3G11591.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3373.1.A1_at	A	A1TS	POPTR_0013s04480	POPTR_0013s04480 (11)	scaffold_13:3074409-3074955(-) (11)	NA	NA	NA	AT5G28910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 82 Blast hits to 80 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os02g56500.1	expressed protein	Medtr1g093750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3375.1.S1_at	A	A1TS	POPTR_0016s02760	POPTR_0016s02760 (11)	scaffold_16:1368835-1369742(+) (11)	POPTR_1436s00210 (7)	P11891	"50S ribosomal protein 5, chloroplastic"	NA	NA	NA	NA	Medtr7g105340.1	"Plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3375.2.S1_at	A	A2MS	POPTR_0016s02690	POPTR_0016s02690 (11)//POPTR_1436s00210 (10)	scaffold_1436:4931-5042(+) (10)//scaffold_16:1332944-1333055(+) (11)//scaffold_16:1355501-1355598(+) (9)	POPTR_0016s02760 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3377.1.S1_at	A	A1TS	POPTR_0007s14280	POPTR_0007s14280 (11)	scaffold_7:14115408-14115711(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G65470.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr5g033490.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3377.1.S1_s_at	A	A1TS	POPTR_0007s14280	POPTR_0007s14280 (11)	scaffold_7:14114287-14115577(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G65470.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr5g033490.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3380.1.S1_at	A	A1TS	POPTR_0006s14100	POPTR_0006s14100 (11)	scaffold_6:11404109-11404341(+) (11)	NA	Q84QC2	Ethylene-responsive transcription factor ERF017	AT1G19210.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g09790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr2g050000.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3381.1.S1_at	A	A1TS	POPTR_0012s07980	POPTR_0012s07980 (11)	scaffold_12:8968365-8968764(-) (11)	NA	NA	NA	AT1G24450.1	Ribonuclease III family protein 	LOC_Os03g63740.1	"NFD2, putative, expressed"	Medtr8g125490.1	Ribonuclease III 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003723|RNA binding	NA
Ptp.3382.1.S1_at	A	A1TS	POPTR_0018s00800	POPTR_0018s00800 (11)	scaffold_18:699232-699747(-) (11)	NA	Q8GZ63	Pentatricopeptide repeat-containing protein At5g25630	AT5G25630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g12810.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g009410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3384.1.A1_at	A	A1TS	POPTR_0001s24610	POPTR_0001s24610 (10)	scaffold_1:23859687-23860153(-) (10)	NA	O95208	Epsin-2	AT3G46540.1	ENTH/VHS family protein 	LOC_Os01g62370.1	"ENTH domain containing protein, expressed"	Medtr1g090360.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3386.1.S1_s_at	A	A1TS	POPTR_0018s01300	POPTR_0018s01300 (11)	scaffold_18:1267030-1267369(+) (11)	NA	O48780	3-ketoacyl-CoA synthase 11	AT2G26640.1	3-ketoacyl-CoA synthase 11 	LOC_Os06g39750.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr8g119040.1	"Ribosomal protein S10; Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.339.1.S1_at	A	A1TS	POPTR_0011s10100	POPTR_0011s10100 (11)	scaffold_11:12614445-12614628(-) (11)	NA	P07245	"C-1-tetrahydrofolate synthase, cytoplasmic"	AT3G12290.1	Amino acid dehydrogenase family protein 	LOC_Os05g05830.1	"bifunctional protein folD, putative, expressed"	Medtr7g130340.1	Tetrahydrofolate dehydrogenase/cyclohydrolase 	GO:0044281|small molecule metabolic process||GO:0009396|folic acid and derivative biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.3391.1.S1_at	A	A1TS	POPTR_0010s08340	POPTR_0010s08340 (11)	scaffold_10:9295749-9296122(+) (11)	NA	Q9LSW9	RING-H2 finger protein ATL16	AT5G43420.1	RING/U-box superfamily protein 	LOC_Os02g57460.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr1g042550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3392.1.A1_s_at	A	A1MS	POPTR_0001s33660	POPTR_0001s33660 (11)	scaffold_1:31856743-31857032(-) (11)	NA	NA	NA	AT3G27030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g30360.1	expressed protein	Medtr4g147160.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3393.1.A1_at	A	A1TS	POPTR_0003s20010	POPTR_0003s20010 (11)	scaffold_3:18633822-18635722(+) (11)	NA	Q5PQR5	U3 small nucleolar ribonucleoprotein protein IMP4	AT1G63780.1	Ribosomal RNA processing Brix domain protein 	LOC_Os08g05880.1	"Brix domain containing protein, putative, expressed"	Medtr3g020870.1	Brix 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3394.1.S1_at	A	A1TS	POPTR_0010s05940	POPTR_0010s05940 (11)	scaffold_10:7373293-7373687(+) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os12g19030.1	"copine, putative, expressed"	Medtr3g102530.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3396.1.S1_s_at	A	A1MS	POPTR_0005s18240	POPTR_0005s18240 (11)	scaffold_5:16363694-16364071(+) (11)	NA	O22042	Mitogen-activated protein kinase kinase kinase 3	AT5G67080.1	mitogen-activated protein kinase kinase kinase 19 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3399.1.S1_at	A	A1TS	POPTR_0012s03880	POPTR_0012s03880 (11)	scaffold_12:3109027-3110235(+) (11)	NA	Q9C9X3	Annexin D5	AT1G68090.1	annexin 5 	LOC_Os09g23160.1	"annexin, putative, expressed"	Medtr4g154520.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
Ptp.34.1.A1_at	A	A2TS	POPTR_0014s07630	POPTR_0014s07630 (11)//POPTR_0014s07610 (10)	scaffold_14:5714947-5715115(+) (11)//scaffold_14:5722313-5722481(+) (11)	NA	Q1W374	Phosphomannomutase	AT2G45790.1	phosphomannomutase 	LOC_Os04g58580.1	"phosphomannomutase, putative, expressed"	Medtr7g084420.1	Eukaryotic phosphomannomutase 	GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0019307|mannose biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004615|phosphomannomutase activity	GO:0005737|cytoplasm
Ptp.340.1.A1_s_at	A	A1TS	POPTR_0004s11470	POPTR_0004s11470 (11)	scaffold_4:10199213-10199658(-) (11)	NA	Q9LVP9	Vesicle transport v-SNARE 13	AT5G39510.1	Vesicle transport v-SNARE family protein 	LOC_Os01g51120.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr6g013360.1	Vesicle transport v-SNARE 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane
Ptp.3400.1.S1_s_at	A	A1TS	POPTR_0012s03610	POPTR_0012s03610 (11)	scaffold_12:2838874-2839001(+) (11)	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.3400.2.S1_a_at	A	A1TS	POPTR_0012s03610	POPTR_0012s03610 (10)	scaffold_12:2837835-2838248(+) (10)	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.3401.1.S1_at	A	A1MS	POPTR_0001s22330	POPTR_0001s22330 (9)	scaffold_1:20945125-20945744(-) (9)	NA	O75937	DnaJ homolog subfamily C member 8	AT5G22080.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g15480.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g104870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3403.1.S1_at	A	A1TS	POPTR_0006s22810	POPTR_0006s22810 (11)	scaffold_6:21715129-21715478(+) (11)	NA	P37107	"Signal recognition particle 54 kDa protein, chloroplastic"	AT5G03940.1	chloroplast signal recognition particle 54 kDa subunit 	LOC_Os11g05556.1	"signal recognition particle 54 kDa protein, putative, expressed"	Medtr7g127650.1	"GTP-binding signal recognition particle SRP54, G-domain "	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0006614|SRP-dependent cotranslational protein targeting to membrane||GO:0044260|cellular macromolecule metabolic process	GO:0008312|7S RNA binding||GO:0005525|GTP binding||GO:0005515|protein binding	GO:0048500|signal recognition particle
Ptp.3404.1.S1_at	A	A1TS	POPTR_0007s15200	POPTR_0007s15200 (9)	scaffold_7:14812430-14813146(-) (9)	NA	P38605	Cycloartenol synthase	AT2G07050.1	cycloartenol synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr5g008860.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
Ptp.3409.1.S1_at	A	A1MS	POPTR_0002s13960	POPTR_0002s13960 (9)	scaffold_2:10354959-10355194(+) (9)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.341.1.A1_at	A	A1TS	POPTR_0013s04180	POPTR_0013s04180 (11)	scaffold_13:2797294-2797826(+) (11)	NA	NA	NA	AT3G04560.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; Has 227 Blast hits to 225 proteins in 83 species: Archae - 0; Bacteria - 17; Metazoa - 98; Fungi - 29; Plants - 51; Viruses - 1; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os02g57500.1	expressed protein	Medtr1g093410.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3410.1.S1_at	A	A1TS	POPTR_0018s12980	POPTR_0018s12980 (11)	scaffold_18:13436358-13436636(-) (11)	POPTR_0006s06690 (7)	NA	NA	AT3G15790.1	methyl-CPG-binding domain 11 	LOC_Os12g42550.1	"methyl-CpG binding domain containing protein, putative, expressed"	Medtr8g120840.1	Methyl-CpG binding 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.3421.2.S1_s_at	A	A1TS	POPTR_0018s08940	POPTR_0018s08940 (11)	scaffold_18:9857800-9858298(+) (11)	NA	Q9ZPI6	Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1	AT4G29010.1	Enoyl-CoA hydratase/isomerase family 	LOC_Os02g17390.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr6g099470.1	IQ calmodulin-binding region; Enoyl-CoA hydratase/isomerase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.343.1.A1_at	A	A1TS	POPTR_0009s11610	POPTR_0009s11610 (9)	scaffold_9:9607161-9607634(-) (9)	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3430.1.S1_at	A	A1TS	POPTR_0009s01990	POPTR_0009s01990 (11)	scaffold_9:2562518-2563644(+) (11)	NA	Q9SE43	Homeobox-leucine zipper protein REVOLUTA	AT5G60690.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g01890.1	"START domain containing protein, expressed"	Medtr2g110200.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3435.1.S1_s_at	A	A2TS	POPTR_0002s07960	POPTR_0002s07960 (11)//POPTR_0002s08040 (9)	scaffold_2:5496264-5496438(-) (11)//scaffold_2:5531316-5531488(-) (10)//scaffold_2:5562015-5562127(+) (9)	NA	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3435.2.S1_s_at	A	A2TS	POPTR_0002s07960	POPTR_0002s08040 (11)//POPTR_0002s07960 (11)	scaffold_2:5495564-5496000(-) (11)//scaffold_2:5562391-5562831(+) (11)	POPTR_0005s20400 (6)	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3438.1.S1_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20852026-20853371(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
Ptp.3438.2.S1_s_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20856962-20857175(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
Ptp.3439.1.S1_s_at	A	A1TS	POPTR_0010s02090	POPTR_0010s02090 (9)	scaffold_10:2418983-2419723(-) (11)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
Ptp.3440.1.S1_at	A	A1TS	POPTR_0006s24400	POPTR_0006s24400 (9)	scaffold_6:23013320-23013809(-) (9)	NA	Q43866	"Beta-fructofuranosidase, insoluble isoenzyme CWINV1"	AT3G13790.2	Glycosyl hydrolases family 32 protein 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr1g019970.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3443.1.S1_at	A	A1MS	POPTR_0012s09080	POPTR_0012s09080 (10)	scaffold_12:10154321-10154697(-) (10)	NA	Q14149	MORC family CW-type zinc finger protein 3	AT1G19100.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os01g36840.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3445.1.S1_at	A	A1MS	POPTR_0014s17010	POPTR_0014s17010 (10)	scaffold_14:13197910-13198415(+) (10)	NA	Q8LPQ9	Flowering time control protein FPA	AT4G12640.1	RNA recognition motif (RRM)-containing protein 	LOC_Os09g12730.2	"RNA recognition motif containing protein, expressed"	Medtr3g111300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3450.1.S1_at	A	A1TS	POPTR_0013s15730	POPTR_0013s15730 (11)	scaffold_13:15635349-15635807(-) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT5G10860.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.4	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3452.1.A1_s_at	A	A1TS	POPTR_0008s19980	POPTR_0008s19980 (11)	scaffold_8:13806234-13806854(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g35060.3	expressed protein	Medtr4g142730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3456.1.S1_at	A	A1TS	POPTR_0001s13700	POPTR_0001s13700 (9)	scaffold_1:10791833-10792697(+) (9)	NA	Q9FYG2	Calmodulin-binding transcription activator 4	AT1G67310.1	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains 	LOC_Os04g31900.1	"calmodulin-binding transcription activator 4, putative, expressed"	Medtr3g104090.1	IQ calmodulin-binding region; Cell surface receptor IPT/TIG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.346.1.S1_s_at	A	A1TS	POPTR_0005s08650	POPTR_0005s08650 (11)	scaffold_5:6018879-6019907(-) (11)	NA	Q9SJ05	"Shikimate kinase, chloroplastic"	AT2G21940.4	shikimate kinase 1 	LOC_Os04g54800.1	"shikimate kinase, putative, expressed"	NA	NA	NA	GO:0004765|shikimate kinase activity||GO:0005524|ATP binding	NA
Ptp.3460.1.S1_s_at	A	A1MS	POPTR_0006s10590	POPTR_0006s10590 (11)	scaffold_6:7923681-7924099(-) (11)	NA	NA	NA	AT5G01710.1	methyltransferases 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3461.1.S1_s_at	A	A1TS	POPTR_0010s06810	POPTR_0010s06810 (11)	scaffold_10:8067504-8068066(-) (11)	NA	O48700	U-box domain-containing protein 6	AT1G24330.1	ARM repeat superfamily protein 	LOC_Os01g67500.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr3g103550.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.3464.1.S1_at	A	A1TS	POPTR_0003s16160	POPTR_0003s16160 (9)	scaffold_3:15764190-15764670(-) (9)	NA	NA	NA	AT5G13310.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g32580.1	expressed protein	Medtr7g097090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3465.2.S1_s_at	A	A1TS	POPTR_0016s03770	POPTR_0016s03770 (11)	scaffold_16:2117498-2117750(-) (11)	NA	P53780	"Cystathionine beta-lyase, chloroplastic"	AT3G57050.1	cystathionine beta-lyase 	LOC_Os06g07960.1	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
Ptp.3466.1.S1_at	A	A1TS	POPTR_0017s03380	POPTR_0017s03380 (9)	scaffold_17:2480635-2481178(+) (9)	NA	Q9LFR1	Probable peptide/nitrate transporter At5g14940	AT5G14940.1	Major facilitator superfamily protein 	LOC_Os06g13210.1	"peptide transporter PTR2, putative, expressed"	Medtr6g009300.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3467.1.S1_at	A	A1TS	POPTR_0017s00530	POPTR_0017s00530 (11)	scaffold_17:203276-203667(-) (11)	NA	O54873	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1	AT3G59980.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g23820.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	NA	GO:0000049|tRNA binding	NA
Ptp.3468.1.S1_at	A	A1TS	POPTR_0004s04010	POPTR_0004s04010 (9)	scaffold_4:2858386-2858804(+) (9)	NA	Q5YDB6	RNA polymerase II C-terminal domain phosphatase-like 1	AT4G21670.1	C-terminal domain phosphatase-like 1 	LOC_Os02g42600.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g024780.1	NLI interacting factor 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
Ptp.3469.1.S1_at	A	A2TS	POPTR_0010s01330	POPTR_0010s02110 (11)//POPTR_0010s01330 (11)	scaffold_10:1327502-1329250(+) (11)//scaffold_10:2432984-2434729(-) (11)	NA	P19515	Lipase	AT5G18640.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g30900.1	"lipase precursor, putative, expressed"	Medtr2g025130.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.3469.1.S1_s_at	A	A2TS	POPTR_0010s01330	POPTR_0010s02110 (11)//POPTR_0010s01330 (11)	scaffold_10:1329353-1331539(+) (11)//scaffold_10:2430764-2432881(-) (11)	NA	P19515	Lipase	AT5G18640.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g30900.1	"lipase precursor, putative, expressed"	Medtr2g025130.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.3471.1.A1_s_at	A	A1TS	POPTR_0001s23850	POPTR_0001s23850 (11)	scaffold_1:23233216-23233626(+) (11)	NA	NA	NA	AT2G44300.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g07100.1	"LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g105470.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3474.1.S1_at	A	A1TS	POPTR_0011s04640	POPTR_0011s04640 (10)	scaffold_11:4608787-4609523(+) (10)	NA	O04084	Serine carboxypeptidase-like 31	AT1G11080.1	serine carboxypeptidase-like 31 	LOC_Os01g22954.1	"serine carboxypeptidase, putative, expressed"	Medtr2g014510.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3476.1.S1_s_at	A	A1TS	POPTR_0011s00360	POPTR_0011s00360 (11)	scaffold_11:145504-145585(+) (11)	NA	P0CH32	Polyubiquitin 4	AT5G20620.1	ubiquitin 4 	LOC_Os04g53620.2	"ubiquitin family protein, putative, expressed"	Medtr4g110760.4	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3478.1.S1_at	A	A1TS	POPTR_0006s03720	POPTR_0006s03720 (9)	scaffold_6:2492475-2493020(+) (9)	NA	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr7g106840.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3479.1.S1_s_at	A	A1TS	POPTR_0015s05510	POPTR_0015s05510 (11)	scaffold_15:5841178-5841860(-) (11)	NA	Q9WTW5	Solute carrier family 22 member 3	AT1G73220.1	organic cation/carnitine transporter1 	LOC_Os07g37510.1	"organic cation transporter-related, putative"	Medtr4g031840.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.348.1.S1_at	A	A1TS	POPTR_0006s26280	POPTR_0006s26280 (11)	scaffold_6:24527513-24528822(+) (11)	NA	NA	NA	AT5G11440.1	CTC-interacting domain 5 	NA	NA	Medtr1g012800.1	Ubiquitin system component Cue 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3480.1.S1_s_at	A	A1TS	POPTR_0010s16730	POPTR_0010s16730 (11)	scaffold_10:15590239-15590742(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT5G15490.1	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25700.3	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.3481.1.A1_a_at	A	A1TS	POPTR_0007s10890	POPTR_0007s10890 (11)	scaffold_7:11080259-11080482(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3481.1.A1_at	A	A1TS	POPTR_0007s10890	POPTR_0007s10890 (10)	scaffold_7:11080169-11081074(-) (10)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3481.2.A1_a_at	A	A1TS	POPTR_0007s10890	POPTR_0007s10890 (11)	scaffold_7:11080470-11080624(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3483.1.S1_s_at	A	A1TS	POPTR_0001s29710	POPTR_0001s29710 (11)	scaffold_1:28349683-28349918(+) (11)	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	LOC_Os01g34780.2	"protein binding protein, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
Ptp.3484.1.S1_at	A	A1TS	POPTR_0019s14910	POPTR_0019s14910 (11)	scaffold_19:15551349-15551824(-) (11)	NA	Q9LVL5	Probable serine/threonine-protein kinase WNK4	AT5G58350.1	with no lysine (K) kinase 4 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g083060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3489.1.S1_at	A	A1TS	POPTR_0006s17900	POPTR_0006s17900 (11)	scaffold_6:16148554-16148759(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.3489.1.S1_s_at	A	A1TS	POPTR_0006s17900	POPTR_0006s17900 (11)	scaffold_6:16148769-16149729(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.3491.1.S1_s_at	A	A1TS	POPTR_0019s08630	POPTR_0019s08630 (11)	scaffold_19:10161786-10161962(-) (11)	NA	NA	NA	AT3G56360.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g52680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3492.1.S1_s_at	A	A1TS	POPTR_0009s10230	POPTR_0009s10230 (11)	scaffold_9:8837530-8838092(-) (11)	NA	Q6ZQ89	E3 ubiquitin-protein ligase MARCH6	AT4G34100.2	RING/U-box superfamily protein 	LOC_Os06g43210.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130230.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3493.1.S1_s_at	A	A1TS	POPTR_0014s13710	POPTR_0014s13710 (11)	scaffold_14:10049170-10049749(+) (11)	NA	Q9NR19	"Acetyl-coenzyme A synthetase, cytoplasmic"	AT5G36880.2	acetyl-CoA synthetase 	LOC_Os02g32490.1	"AMP-binding enzyme, putative, expressed"	Medtr7g099650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3494.1.S1_at	A	A1TS	POPTR_0001s28570	POPTR_0001s28570 (10)	scaffold_1:27353757-27355044(+) (10)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT1G07120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). "	LOC_Os03g18300.1	"chloroplast unusual positioning protein, putative, expressed"	Medtr5g080130.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3497.1.S1_at	A	A1TS	POPTR_0005s27810	POPTR_0005s27810 (11)	scaffold_5:25292408-25292645(-) (11)	NA	Q9I8B3	RNA-binding protein 24-B	AT1G76460.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g48340.2	"RNA recognition motif containing protein, putative, expressed"	Medtr3g159840.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3499.1.S1_at	A	A1MS	POPTR_0006s06040	POPTR_0006s06040 (9)	scaffold_6:4297044-4297493(-) (9)	NA	Q8N1E6	F-box/LRR-repeat protein 14	AT1G15740.1	Leucine-rich repeat family protein 	LOC_Os04g42470.4	"regulatory subunit, putative, expressed"	Medtr8g122250.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
Ptp.35.1.A1_at	A	A1TS	POPTR_0005s17670	POPTR_0005s17670 (11)	scaffold_5:15293292-15295510(-) (11)	NA	Q8N5D0	WD and tetratricopeptide repeats protein 1	AT5G10940.2	transducin family protein / WD-40 repeat family protein 	LOC_Os03g08830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g148940.1	WD40-like; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.350.1.A1_at	A	A1TS	POPTR_0001s19190	POPTR_0001s19190 (11)	scaffold_1:16650082-16650258(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.350.1.A1_s_at	A	A1TS	POPTR_0001s19190	POPTR_0001s19190 (11)	scaffold_1:16650201-16650684(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.3500.1.S1_at	A	A1TS	POPTR_0012s02210	POPTR_0012s02210 (10)	scaffold_12:1853257-1853572(+) (10)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3502.2.S1_a_at	A	A1TS	POPTR_0003s02570	POPTR_0003s02570 (11)	scaffold_3:2668835-2669291(+) (11)	NA	Q9SSQ4	Protein FAR1-RELATED SEQUENCE 6	AT1G52520.1	FAR1-related sequence 6 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr2g034270.1	"FAR1; Heavy metal transport/detoxification protein; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3503.1.A1_at	A	A1TS	POPTR_0014s08550	POPTR_0014s08550 (11)	scaffold_14:6355412-6355518(+) (11)	NA	NA	NA	AT1G01490.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g38870.1	"heavy metal-associated domain containing protein, expressed"	AC235567_30.1	Heavy metal transport/detoxification protein AC235567.1 97384-100523 F EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.3504.1.S1_at	A	A1MS	POPTR_0003s08460	POPTR_0003s08460 (10)	scaffold_3:9876934-9877469(-) (10)	NA	Q9FJR0	Regulator of nonsense transcripts 1 homolog	AT5G47010.1	"RNA helicase, putative "	LOC_Os07g31340.1	"regulator of nonsense transcripts 1, putative, expressed"	Medtr5g014030.1	"Type III restriction enzyme, res subunit "	"GO:0000184|""nuclear-transcribed mRNA catabolic process, nonsense-mediated decay""||GO:0044265|cellular macromolecule catabolic process"	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0008270|zinc ion binding	GO:0005737|cytoplasm
Ptp.3505.1.S1_at	A	A1MS	POPTR_0011s14710	POPTR_0011s14710 (11)	scaffold_11:17015747-17015880(+) (11)	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3506.1.S1_at	A	A1TS	POPTR_0005s11200	POPTR_0005s11200 (11)	scaffold_5:8124027-8125650(-) (11)	NA	NA	NA	AT4G35920.2	PLAC8 family protein 	LOC_Os03g06120.3	"PLAC8 family protein, expressed"	Medtr5g022570.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3507.1.S1_s_at	A	A1TS	POPTR_0002s10700	POPTR_0002s10700 (11)	scaffold_2:7766142-7766186(-) (11)	NA	Q9LJM4	Receptor-like protein kinase HAIKU2	AT1G09970.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os12g43640.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.3508.1.S1_at	A	A1TS	POPTR_0015s04720	POPTR_0015s04720 (10)	scaffold_15:4933591-4934793(-) (10)	NA	Q46888	Uncharacterized oxidoreductase ygbJ	AT1G18270.2	ketose-bisphosphate aldolase class-II family protein 	LOC_Os06g14740.1	"NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed"	Medtr6g083360.1	"Ketose-bisphosphate aldolase, class-II; 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal-like; ; "	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0008270|zinc ion binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity||GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.3509.1.S1_s_at	A	A1TS	POPTR_0011s10500	POPTR_0011s10500 (11)	scaffold_11:12993967-12994455(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g14940.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
Ptp.351.1.S1_at	A	A1TS	POPTR_0002s12940	POPTR_0002s12940 (10)	scaffold_2:9613105-9613247(-) (10)	NA	Q9LT08	26S proteasome non-ATPase regulatory subunit 14	AT5G23540.1	Mov34/MPN/PAD-1 family protein 	LOC_Os05g30800.1	"26S proteasome non-ATPase regulatory subunit 14, putative, expressed"	Medtr2g021360.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3510.1.S1_at	A	A2TS	POPTR_0007s02720	POPTR_1698s00200 (11)//POPTR_0007s02720 (11)	scaffold_1698:53-443(-) (11)//scaffold_7:1584924-1585314(+) (11)	NA	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os07g35260.2	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr2g103510.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3511.1.S1_s_at	A	A1TS	POPTR_0002s11210	POPTR_0002s11210 (11)	scaffold_2:8279188-8279490(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3512.1.S1_s_at	A	A2TS	POPTR_0017s13650	POPTR_0017s13650 (11)//POPTR_1731s00200 (11)	scaffold_17:13749501-13750223(+) (11)//scaffold_1731:90-812(+) (11)	NA	Q8LFJ9	GDSL esterase/lipase 7	AT5G15720.1	GDSL-motif lipase 7 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g022220.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.3513.1.S1_at	A	A1TS	POPTR_0015s11730	POPTR_0015s11730 (11)	scaffold_15:12288338-12288784(+) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr3g151260.1	RNA recognition motif 2 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3515.1.S1_s_at	A	A2TS	POPTR_0003s18620	POPTR_0003s18620 (11)//POPTR_0001s07480 (9)	scaffold_1:5613548-5615095(-) (9)//scaffold_3:17625961-17627959(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr4g023350.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.3516.1.S1_at	A	A1MS	POPTR_0011s09270	POPTR_0011s09270 (9)	scaffold_11:11491726-11492219(-) (9)	NA	NA	NA	AT4G26980.1	RNI-like superfamily protein 	LOC_Os06g46590.2	expressed protein	Medtr5g100310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.352.1.S1_at	A	A1TS	POPTR_0003s12960	POPTR_0003s12960 (11)	scaffold_3:13374819-13375608(-) (11)	NA	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.3520.1.A1_s_at	A	A1TS	POPTR_0015s13060	POPTR_0015s13060 (11)	scaffold_15:13180964-13181909(+) (11)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3521.1.S1_at	A	A1TS	POPTR_0011s17280	POPTR_0011s17280 (10)	scaffold_11:18867113-18868613(+) (10)	NA	Q5ZMQ9	Peroxisomal targeting signal 1 receptor	AT5G56290.1	peroxin 5 	LOC_Os08g39080.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g010600.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3522.1.S1_s_at	A	A1TS	POPTR_0006s05130	POPTR_0006s05130 (11)	scaffold_6:3565893-3566579(-) (11)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3523.1.S1_s_at	A	A1TS	POPTR_0015s13360	POPTR_0015s13360 (11)	scaffold_15:13356981-13357258(+) (11)	NA	Q4FE45	E3 ubiquitin-protein ligase XBAT33	AT5G07270.1	XB3 ortholog 3 in Arabidopsis thaliana 	LOC_Os10g37730.1	"pollen ankyrin, putative, expressed"	AC146807_5.1	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3524.1.S1_at	A	A1MS	POPTR_0006s25200	POPTR_0006s25200 (9)	scaffold_290:7425-7457(-) (9)//scaffold_6:23624413-23624445(+) (9)	NA	Q54J73	Poly(A) polymerase	AT4G32850.6	nuclear poly(a) polymerase 	LOC_Os06g36360.4	expressed protein	Medtr3g128240.1	"DNA polymerase, beta-like region; Poly(A) polymerase, RNA-binding region; Poly(A) polymerase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
Ptp.3525.1.S1_s_at	A	A1TS	POPTR_0002s26430	POPTR_0002s26430 (9)	scaffold_2:23417297-23417777(+) (9)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3526.1.S1_at	A	A1TS	POPTR_0003s06890	POPTR_0003s06890 (11)	scaffold_3:8424450-8425498(-) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3529.1.S1_at	A	A1TS	POPTR_0019s09450	POPTR_0019s09450 (11)	scaffold_19:10984131-10985541(-) (11)	NA	P90648	Myosin heavy chain kinase B	AT1G21651.1	zinc ion binding 	LOC_Os05g34880.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr1g025560.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.353.2.S1_a_at	A	A1TS	POPTR_0001s33730	POPTR_0001s33730 (11)	scaffold_1:31902854-31903209(-) (11)	NA	P49730	Ribonucleoside-diphosphate reductase small chain	AT3G27060.1	Ferritin/ribonucleotide reductase-like family protein 	LOC_Os06g03720.1	"ribonucleoside-diphosphate reductase small chain, putative, expressed"	NA	NA	GO:0009186|deoxyribonucleoside diphosphate metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0004748|ribonucleoside-diphosphate reductase activity	NA
Ptp.3530.1.S1_at	A	A1TS	POPTR_0006s05980	POPTR_0006s05980 (11)	scaffold_6:4232787-4233114(+) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr8g122340.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3536.1.S1_s_at	A	A1TS	POPTR_0001s10580	POPTR_0001s10580 (11)	scaffold_1:8232630-8232848(+) (11)	NA	NA	NA	AT4G23840.1	Leucine-rich repeat (LRR) family protein 	LOC_Os05g12140.1	"Leucine Rich Repeat family protein, expressed"	Medtr3g058830.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
Ptp.3537.1.S1_s_at	A	A1TS	POPTR_0003s19220	POPTR_0003s19220 (11)	scaffold_3:18013533-18013974(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g124870.1	"Auxin-induced protein 5NG4, related "	NA	NA	GO:0016020|membrane
Ptp.3539.1.S1_at	A	A1TS	POPTR_0005s28040	POPTR_0005s28040 (11)	scaffold_5:25439602-25439852(+) (11)	NA	NA	NA	AT1G21000.2	PLATZ transcription factor family protein 	LOC_Os06g41930.2	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3539.1.S1_x_at	A	A1TS	POPTR_0005s28040	POPTR_0005s28040 (11)	scaffold_5:25439313-25439852(+) (11)	NA	NA	NA	AT1G21000.2	PLATZ transcription factor family protein 	LOC_Os06g41930.2	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.354.1.S1_at	A	A1TS	POPTR_0008s09520	POPTR_0008s09520 (10)	scaffold_8:5891525-5892674(-) (10)	NA	Q5R8F6	UPF0420 protein C16orf58 homolog	AT1G13770.1	"Protein of unknown function, DUF647 "	LOC_Os03g11500.1	"DUF647 domain containing protein, putative, expressed"	Medtr5g047400.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3541.1.S1_at	A	A1TA	POPTR_0003s15810	POPTR_0003s15810 (9)	scaffold_3:15515619-15516117(-) (9)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G47910.1	respiratory burst oxidase homologue D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
Ptp.355.1.A1_at	A	A1TS	POPTR_0015s07790	POPTR_0015s07790 (10)	scaffold_15:9079144-9080629(-) (10)	NA	O14099	Uncharacterized RING finger protein C2F3.16	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
Ptp.3551.1.S1_a_at	A	A1TS	POPTR_0012s05750	POPTR_0012s05750 (11)	scaffold_12:5557980-5558480(-) (11)	NA	Q3U4B4	Lipase member N	AT1G73920.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g33784.1	"lipase family protein, putative, expressed"	Medtr4g158530.1	AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
Ptp.3552.1.S1_s_at	A	A1TS	POPTR_0006s04870	POPTR_0006s04870 (9)	scaffold_6:3396574-3396854(-) (9)	NA	O81644	Villin-2	AT2G41740.1	villin 2 	LOC_Os03g24220.1	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.3557.1.S1_s_at	A	A1TS	POPTR_0006s23290	POPTR_0006s23290 (11)	scaffold_6:22052670-22053041(+) (11)	NA	O76094	Signal recognition particle 72 kDa protein	AT1G67680.1	SRP72 RNA-binding domain 	LOC_Os01g66560.1	"signal recognition particle 72 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
Ptp.3558.1.A1_at	A	A1TS	POPTR_0006s06100	POPTR_0006s06100 (10)	scaffold_6:4339785-4340010(+) (10)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.2	glucuronidase 3 	LOC_Os06g08090.2	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
Ptp.3559.1.A1_at	A	A1TS	POPTR_0006s09860	POPTR_0006s09860 (11)	scaffold_6:7252904-7253414(+) (11)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3561.1.S1_at	A	A1TS	POPTR_0010s21780	POPTR_0010s21780 (11)	scaffold_10:18915853-18918053(-) (11)	NA	P28563	Dual specificity protein phosphatase 1	AT3G55270.1	mitogen-activated protein kinase phosphatase 1 	LOC_Os05g02500.1	"dual specificity protein phosphatase, putative, expressed"	Medtr3g102500.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.3563.1.S1_s_at	A	A1TS	POPTR_0003s04120	POPTR_0003s04120 (11)	scaffold_3:4780743-4781271(+) (11)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3565.1.S1_at	A	A1MA	POPTR_0007s06980	POPTR_0007s06980 (10)	scaffold_7:5334765-5335164(-) (10)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr1g124770.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3566.1.S1_at	A	A1TS	POPTR_0012s14750	POPTR_0012s14750 (11)	scaffold_12:14517812-14518338(-) (11)	NA	NA	NA	AT5G44860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os01g58620.1	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3567.1.S1_s_at	A	A1TS	POPTR_0003s21690	POPTR_0003s21690 (11)	scaffold_3:19746284-19746859(-) (11)	NA	Q9LXT9	Callose synthase 3	AT5G13000.1	glucan synthase-like 12 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr7g005640.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.3569.1.S1_at	A	A1TS	POPTR_0015s01020	POPTR_0015s01020 (9)	scaffold_15:594613-595095(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G46620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g02330.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g123370.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
Ptp.357.1.S1_at	A	A1TS	POPTR_0009s04900	POPTR_0009s04900 (10)	scaffold_9:5150125-5151825(+) (10)	NA	A8AI59	Flavoprotein wrbA	AT5G58800.2	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g078480.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.3570.1.S1_s_at	A	A2TS	POPTR_0001s11440	POPTR_0001s11440 (11)//POPTR_0003s14750 (11)	scaffold_1:8901814-8901951(+) (11)//scaffold_3:14747773-14747910(+) (11)	NA	Q8BUV8	Protein GPR107	AT5G42090.1	Lung seven transmembrane receptor family protein 	LOC_Os06g04130.2	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr3g109390.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
Ptp.3571.1.S1_at	A	A1TS	POPTR_0001s12740	POPTR_0001s12740 (9)	scaffold_1:9868848-9869053(-) (9)	NA	NA	NA	AT5G32450.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g54870.2	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.3572.1.S1_s_at	A	A1TS	POPTR_0011s15140	POPTR_0011s15140 (11)	scaffold_11:17301598-17302121(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G75500.2	Walls Are Thin 1 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g081140.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3577.1.S1_at	A	A1TS	POPTR_0005s28160	POPTR_0005s28160 (11)	scaffold_5:25512708-25513245(-) (11)	POPTR_0002s00280 (7)	Q8RXL8	Uncharacterized membrane protein At1g06890	AT1G21070.1	Nucleotide-sugar transporter family protein 	LOC_Os07g39280.1	"transporter-related, putative, expressed"	Medtr4g141240.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.358.1.S1_s_at	A	A1TS	POPTR_0002s02480	POPTR_0002s02480 (11)	scaffold_2:1398872-1399088(-) (11)	NA	NA	NA	AT1G75710.1	C2H2-like zinc finger protein 	LOC_Os04g02510.1	"ZOS4-01 - C2H2 zinc finger protein, expressed"	Medtr1g030900.1	"Zinc finger, C2H2-type "	GO:0009405|pathogenesis||GO:0051704|multi-organism process	GO:0019855|calcium channel inhibitor activity||GO:0008270|zinc ion binding	GO:0005622|intracellular||GO:0005576|extracellular region
Ptp.3581.1.S1_at	A	A1TS	POPTR_0006s07650	POPTR_0006s07650 (10)	scaffold_6:5575978-5576444(-) (10)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
Ptp.3585.1.S1_s_at	A	A1TS	POPTR_0005s17180	POPTR_0005s17180 (11)	scaffold_5:14347219-14347552(-) (11)	NA	Q9C9Q8	Probable pectin methyltransferase QUA2	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr5g072950.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.3586.1.S1_at	A	A1TS	POPTR_0019s09540	POPTR_0019s09540 (10)	scaffold_19:11130970-11131378(-) (10)	NA	Q93VV5	Probable peptide/nitrate transporter At1g59740	AT1G59740.1	Major facilitator superfamily protein 	LOC_Os11g12740.1	"peptide transporter PTR2, putative, expressed"	Medtr2g005060.1	"TGF-beta receptor, type I/II extracellular region; ABC transporter related "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3587.1.A1_at	A	A1TS	POPTR_0004s22520	POPTR_0004s22520 (11)	scaffold_4:21387476-21387782(-) (11)	NA	Q56WF8	Serine carboxypeptidase-like 48	AT3G45010.1	serine carboxypeptidase-like 48 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g113720.2	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3587.1.A1_s_at	A	A1TS	POPTR_0004s22520	POPTR_0004s22520 (11)	scaffold_4:21387938-21388062(-) (11)	NA	Q56WF8	Serine carboxypeptidase-like 48	AT3G45010.1	serine carboxypeptidase-like 48 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g113720.2	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3588.1.S1_at	A	A1TS	POPTR_0008s18280	POPTR_0008s18280 (9)	scaffold_8:12235330-12235717(-) (9)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.359.2.S1_a_at	A	A1TS	POPTR_0008s06080	POPTR_0008s06080 (11)	scaffold_8:3592201-3592691(-) (11)	NA	Q8W115	PRA1 family protein A3	AT3G11402.2	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os05g38160.1	"prenylated rab acceptor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3590.1.A1_s_at	A	A1TS	POPTR_0013s11670	POPTR_0013s11670 (11)	scaffold_13:12341975-12342651(-) (11)	NA	NA	NA	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.3591.1.A1_s_at	A	A1TS	POPTR_0004s16200	POPTR_0004s16200 (11)	scaffold_4:16624592-16624822(+) (11)	NA	NA	NA	AT1G63850.1	BTB/POZ domain-containing protein 	LOC_Os03g51380.1	expressed protein	Medtr4g095540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3598.1.A1_at	A	A1TS	POPTR_0001s33790	POPTR_0001s33790 (11)	scaffold_1:31956866-31957231(+) (11)	NA	P37707	B2 protein	AT3G27090.1	DCD (Development and Cell Death) domain protein 	LOC_Os05g41930.3	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.36.1.S1_s_at	A	A3TS	POPTR_0002s20890	POPTR_0483s00220 (11)//POPTR_0002s20890 (11)//POPTR_0483s00200 (10)	scaffold_2:17113635-17113882(-) (11)//scaffold_483:319-566(+) (11)//scaffold_483:14584-14831(+) (11)	NA	P42760	Glutathione S-transferase 1	AT1G02930.2	glutathione S-transferase 6 	LOC_Os01g27360.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3600.1.S1_at	A	A1TS	POPTR_0016s07910	POPTR_0016s07910 (11)	scaffold_16:5739004-5739239(+) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37970.1	cinnamyl alcohol dehydrogenase 6 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3600.1.S1_s_at	A	A1TS	POPTR_0016s07910	POPTR_0016s07910 (11)	scaffold_16:5739261-5739560(+) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37970.1	cinnamyl alcohol dehydrogenase 6 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3605.1.A1_s_at	A	A1TS	POPTR_0016s06000	POPTR_0016s06000 (11)	scaffold_16:3924781-3925285(-) (11)	NA	Q39147	DNA-3-methyladenine glycosylase	AT3G12040.1	DNA-3-methyladenine glycosylase (MAG) 	LOC_Os02g53430.1	"DNA-3-methyladenine glycosylase, putative, expressed"	Medtr7g112240.1	Methylpurine-DNA glycosylase (MPG) 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003905|alkylbase DNA N-glycosylase activity	NA
Ptp.3607.1.S1_at	A	A1MS	POPTR_0008s12090	POPTR_0008s12090 (9)	scaffold_8:7802340-7802931(-) (9)	NA	NA	NA	AT1G68440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr5g067220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3608.1.S1_s_at	A	A1TS	POPTR_0001s31220	POPTR_0001s31220 (11)	scaffold_1:29549904-29550182(-) (11)	NA	O65922	Caffeoyl-CoA O-methyltransferase 2	AT4G34050.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
Ptp.361.1.S1_at	A	A1TS	POPTR_0008s14580	POPTR_0008s14580 (10)	scaffold_8:9666161-9666597(+) (10)	NA	Q0WPE9	Nucleobase-ascorbate transporter 7	AT1G60030.1	nucleobase-ascorbate transporter 7 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g073630.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3611.1.S1_at	A	A1TS	POPTR_0014s17930	POPTR_0014s17930 (10)	scaffold_14:14468152-14468682(-) (10)	NA	Q9FRK5	Uncharacterized membrane protein At1g75140	AT1G75140.1	unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19370.1); Has 51 Blast hits to 49 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os06g02480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3612.1.S1_s_at	A	A1TS	POPTR_0001s12530	POPTR_0001s12530 (11)	scaffold_1:9717672-9718591(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr7g102590.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.3616.1.S1_s_at	A	A1TS	POPTR_0606s00210	POPTR_0606s00210 (11)	scaffold_606:7731-8061(+) (11)	NA	O81488	PHD finger protein At5g26210	AT2G02470.1	alfin-like 6 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3619.1.S1_at	A	A1TS	POPTR_0001s04580	POPTR_0001s04580 (9)	scaffold_1:3570328-3571576(-) (9)	NA	NA	NA	AT5G19860.1	"Protein of unknown function, DUF538 "	LOC_Os03g48710.1	expressed protein	Medtr4g133910.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.362.1.A1_s_at	A	A1TS	POPTR_0013s11910	POPTR_0013s11910 (11)	scaffold_13:12535708-12537132(-) (11)	NA	NA	NA	AT1G34355.1	forkhead-associated (FHA) domain-containing protein  	LOC_Os11g07050.1	"FHA domain containing protein, putative, expressed"	Medtr1g122320.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3620.1.S1_s_at	A	A1TS	POPTR_0025s00560	POPTR_0025s00560 (11)	scaffold_25:250847-251079(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.3622.1.S1_s_at	A	A1TS	POPTR_0011s05610	POPTR_0011s05610 (11)	scaffold_11:5584076-5584356(-) (11)	NA	Q688X9	Protein DEHYDRATION-INDUCED 19	NA	NA	LOC_Os05g48800.2	"drought induced 19 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3627.1.A1_at	A	A1TS	POPTR_0014s08310	POPTR_0014s08310 (11)	scaffold_14:6177291-6177673(+) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT4G00330.1	calmodulin-binding receptor-like cytoplasmic kinase 2 	LOC_Os03g05470.1	"tyrosine protein kinase domain containing protein, putative, expressed"	AC235567_9.1	"Serine/threonine protein kinase, active site AC235567.1 39723-36116 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3628.1.S1_s_at	A	A1TS	POPTR_0018s01730	POPTR_0018s01730 (10)	scaffold_18:1575585-1577041(-) (10)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3628.2.S1_s_at	A	A1TS	POPTR_0018s01730	POPTR_0018s01730 (11)	scaffold_18:1578207-1579242(-) (11)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3629.1.S1_at	A	A1TS	POPTR_0010s04340	POPTR_0010s04340 (10)	scaffold_10:5415921-5416689(-) (10)	NA	NA	NA	AT2G02590.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 405 Blast hits to 405 proteins in 185 species: Archae - 65; Bacteria - 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). 	LOC_Os03g58620.1	"small multi-drug export protein, putative, expressed"	Medtr5g038640.1	Putative small multi-drug export 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3635.1.S1_s_at	A	A1TS	POPTR_0012s03610	POPTR_0012s03610 (10)	scaffold_12:2841599-2841819(+) (10)	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.3636.1.S1_at	A	A1TS	POPTR_0010s17150	POPTR_0010s17150 (11)	scaffold_10:15871180-15871625(+) (11)	NA	Q9SEL5	Vesicle transport v-SNARE 12	AT1G26670.1	Vesicle transport v-SNARE family protein 	LOC_Os01g51120.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr5g045560.1	Vesicle transport v-SNARE 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane
Ptp.3637.1.S1_at	A	A1TS	POPTR_0004s04840	POPTR_0004s04840 (10)	scaffold_4:3587276-3587639(-) (10)	NA	NA	NA	AT1G28420.1	homeobox-1 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr2g018010.1	DDT; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3639.1.S1_at	A	A1TS	POPTR_0004s15200	POPTR_0004s15200 (10)	scaffold_4:15848651-15849145(-) (10)	NA	Q9FX85	Peroxidase 10	AT1G49570.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr5g017850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.3639.2.S1_a_at	A	A1TS	POPTR_0004s15200	POPTR_0004s15200 (11)	scaffold_4:15850478-15850682(-) (11)//scaffold_9:9256729-9256839(-) (9)	POPTR_0009s10960 (8)	Q9FX85	Peroxidase 10	AT1G49570.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr5g017850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.3639.2.S1_at	A	A1MS	POPTR_0004s15200	POPTR_0004s15200 (11)	scaffold_4:15850154-15850438(-) (11)	NA	Q9FX85	Peroxidase 10	AT1G49570.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr5g017850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.364.2.S1_a_at	A	A1TS	POPTR_0011s11970	POPTR_0011s11970 (11)	scaffold_11:14763734-14764011(-) (11)	NA	Q54ID0	Cytochrome c oxidase copper chaperone	AT3G15352.1	cytochrome c oxidase 17 	LOC_Os09g25314.1	"cytochrome c oxidase copper chaperone, putative, expressed"	Medtr2g100210.1	Cytochrome C oxidase copper chaperone 	GO:0006825|copper ion transport	GO:0016531|copper chaperone activity	GO:0005758|mitochondrial intermembrane space
Ptp.3641.1.S1_at	A	A1TS	POPTR_0008s03480	POPTR_0008s03480 (11)	scaffold_8:1855463-1856039(+) (11)	NA	P32826	Serine carboxypeptidase-like 49	AT3G10410.1	SERINE CARBOXYPEPTIDASE-LIKE 49 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g068630.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3642.1.A1_at	A	A1TS	POPTR_0018s13040	POPTR_0018s13040 (11)	scaffold_18:13502267-13502576(-) (11)	NA	NA	NA	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr8g120620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3642.1.A1_s_at	A	A2TS	POPTR_0018s13040	POPTR_0018s13040 (11)//POPTR_0018s13020 (9)	scaffold_18:13488480-13488938(-) (9)//scaffold_18:13502403-13502872(-) (11)	NA	NA	NA	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr8g120620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3644.1.S1_at	A	A1TS	POPTR_0009s11080	POPTR_0009s11080 (11)	scaffold_9:9325773-9325841(-) (11)	NA	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3644.1.S1_s_at	A	A1TS	POPTR_0009s11080	POPTR_0009s11080 (11)	scaffold_9:9325857-9326477(-) (11)	POPTR_0009s11090 (7)	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3644.1.S1_x_at	A	A1TS	POPTR_0009s11080	POPTR_0009s11080 (11)	scaffold_9:9325774-9326620(-) (11)	POPTR_0009s11090 (8)	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3646.1.S1_s_at	A	A1TS	POPTR_0006s04170	POPTR_0006s04170 (11)	scaffold_6:2830126-2831217(+) (11)	NA	Q9SU56	"L-galactono-1,4-lactone dehydrogenase, mitochondrial"	AT3G47930.1	"L-galactono-1,4-lactone dehydrogenase "	LOC_Os11g04740.1	"FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed"	Medtr1g068880.1	Galactonolactone dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3648.1.S1_at	A	A1TS	POPTR_0001s16750	POPTR_0001s16750 (10)	scaffold_1:13531606-13531965(+) (10)	NA	O65351	Subtilisin-like protease	AT3G14067.1	Subtilase family protein 	LOC_Os02g53860.1	"OsSub22 - Putative Subtilisin homologue, expressed"	Medtr8g025260.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.3651.1.S1_s_at	A	A1TS	POPTR_0014s12790	POPTR_0014s12790 (11)	scaffold_14:9422889-9423473(-) (11)	NA	Q110D7	Peptide chain release factor 1	AT3G62910.1	Peptide chain release factor 1 	LOC_Os11g43600.1	"peptide chain release factor protein, putative, expressed"	Medtr7g130010.1	Peptide chain release factor 1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
Ptp.3653.1.S1_at	A	A1TS	POPTR_0002s08870	POPTR_0002s08870 (11)	scaffold_2:6236954-6237769(+) (11)	NA	Q8L751	Oxysterol-binding protein-related protein 1C	AT4G08180.2	OSBP(oxysterol binding protein)-related protein 1C 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
Ptp.3655.2.S1_a_at	A	A1TS	POPTR_0014s16870	POPTR_0014s16870 (11)	scaffold_14:12989617-12990534(-) (11)	NA	Q9SSE5	Zinc finger protein CONSTANS-LIKE 9	AT3G07650.4	CONSTANS-like 9 	LOC_Os06g19444.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr3g106670.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3656.1.S1_at	A	A1TA	POPTR_0007s13690	POPTR_0007s13690 (10)	scaffold_7:13707278-13707536(-) (10)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr8g090480.1	"LRR receptor-like serine/threonine-protein kinase FLS2 precursor, related "	NA	GO:0005515|protein binding	NA
Ptp.3658.2.A1_at	A	A1TS	POPTR_0003s19130	POPTR_0003s19130 (10)	scaffold_3:17932575-17932674(+) (10)	NA	A0JPP1	Dr1-associated corepressor	AT3G12480.1	"nuclear factor Y, subunit C11 "	LOC_Os05g41450.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g044480.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.3659.1.A1_s_at	A	A1TS	POPTR_0014s09150	POPTR_0014s09150 (10)	scaffold_14:6787700-6788189(+) (10)	NA	NA	NA	AT1G01430.1	TRICHOME BIREFRINGENCE-LIKE 25 	LOC_Os05g12380.1	expressed protein	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3660.1.S1_at	A	A1TS	POPTR_0001s09810	POPTR_0001s09810 (9)	scaffold_1:7552580-7553027(-) (9)	NA	Q8LPH6	Transcription factor MYB86	AT1G63910.1	myb domain protein 103 	LOC_Os08g05520.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g010100.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3662.1.S1_at	A	A1TS	POPTR_0018s13010	POPTR_0018s13010 (11)	scaffold_18:13485060-13485348(+) (11)	NA	Q8R139	Equilibrative nucleoside transporter 4	AT1G02630.1	Nucleoside transporter family protein 	LOC_Os08g10450.1	"nucleoside transporter, putative, expressed"	Medtr8g120640.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
Ptp.3665.1.S1_s_at	A	A1TS	POPTR_0016s01980	POPTR_0016s01980 (11)	scaffold_16:907826-908197(-) (11)	NA	Q9LIE5	Protein FAR-RED ELONGATED HYPOCOTYL 3	AT3G22170.2	far-red elongated hypocotyls 3 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3670.1.S1_at	A	A1TS	POPTR_0002s08560	POPTR_0002s08560 (11)	scaffold_2:5980688-5981214(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G21890.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097580.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.3670.2.S1_at	A	A1MS	POPTR_0002s08560	POPTR_0002s08560 (11)	scaffold_2:5982280-5982449(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G21890.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097580.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.3673.1.S1_s_at	A	A1TS	POPTR_0014s08180	POPTR_0014s08180 (11)	scaffold_14:6072595-6072881(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.2	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3674.1.S1_s_at	A	A1TS	POPTR_0006s01310	POPTR_0006s01310 (11)	scaffold_6:758699-761303(+) (11)	NA	Q7SXW4	Transmembrane protein 111	AT4G12590.1	"Protein of unknown function DUF106, transmembrane "	LOC_Os09g32220.1	"pob, putative, expressed"	Medtr1g093450.1	"Protein of unknown function DUF850, transmembrane eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3679.1.S1_s_at	A	A1TS	POPTR_0014s14210	POPTR_0014s14210 (11)	scaffold_14:10405893-10407741(-) (11)	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr7g099400.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
Ptp.368.1.S1_s_at	A	A1TS	POPTR_0009s11800	POPTR_0009s11800 (11)	scaffold_9:9724959-9725339(+) (11)	NA	Q0WW26	Coatomer subunit gamma	AT4G34450.1	"coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative "	LOC_Os07g10150.1	"coatomer subunit gamma-2, putative, expressed"	Medtr3g159510.1	"Adaptin, N-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; ; "	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat||GO:0005798|Golgi-associated vesicle
Ptp.3683.1.A1_at	A	A1TS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13976348-13976409(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3683.2.S1_at	A	A1MS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13975777-13975937(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3683.2.S1_s_at	A	A1TS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13976002-13976106(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3686.1.S1_at	A	A1TS	POPTR_0012s10200	POPTR_0012s10200 (9)	scaffold_12:11028445-11028663(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3687.1.A1_s_at	A	A1TS	POPTR_0001s34750	POPTR_0001s34750 (11)	scaffold_1:32986193-32986295(-) (11)	NA	Q93X17	Snakin-2	AT5G14920.1	Gibberellin-regulated family protein 	LOC_Os04g39110.1	"GASR4 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr6g008660.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.369.1.S1_at	A	A1TS	POPTR_0001s14420	POPTR_0001s14420 (9)	scaffold_1:11311981-11312216(+) (9)	NA	NA	NA	AT1G04770.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g43040.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g064920.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3691.1.S1_at	A	A1TS	POPTR_0016s04530	POPTR_0016s04530 (9)	scaffold_16:2661209-2661525(-) (9)	NA	NA	NA	AT3G58000.1	VQ motif-containing protein 	LOC_Os04g57030.1	"VQ domain containing protein, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3693.1.S1_at	A	A1TS	POPTR_0014s11270	POPTR_0014s11270 (11)	scaffold_14:8389776-8390619(+) (11)	NA	Q9NPF5	DNA methyltransferase 1-associated protein 1	AT2G47210.1	myb-like transcription factor family protein 	LOC_Os05g46330.1	"MYB family transcription factor, putative, expressed"	Medtr7g133340.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.37.1.S1_at	A	A1TS	POPTR_0003s09110	POPTR_0003s09110 (10)	scaffold_3:10434885-10437360(+) (10)	NA	Q8H100	Probable ADP-ribosylation factor GTPase-activating protein AGD8	AT4G17890.1	ARF-GAP domain 8 	LOC_Os03g63710.1	"GTPase-activating protein, putative, expressed"	Medtr8g078470.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.3700.1.A1_at	A	A1TS	POPTR_0004s19550	POPTR_0004s19550 (9)	scaffold_4:19359440-19359805(+) (9)	NA	NA	NA	AT3G07350.1	Protein of unknown function (DUF506)  	LOC_Os11g25040.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr8g012610.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3703.1.S1_s_at	A	A1TS	POPTR_0013s14170	POPTR_0013s14170 (11)	scaffold_13:14468251-14468486(-) (11)	NA	Q8GZA8	Protein ULTRAPETALA 1	AT4G28190.1	"Developmental regulator, ULTRAPETALA "	LOC_Os01g57240.1	expressed protein	AC229695_17.1	"Protein ULTRAPETALA 2, putative AC229695.5 69003-71368 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3704.1.S1_at	A	A1TS	POPTR_0009s08730	POPTR_0009s08730 (11)	scaffold_9:7888659-7889176(-) (11)	NA	NA	NA	AT1G10020.1	Protein of unknown function (DUF1005) 	LOC_Os07g04150.1	"stress-induced protein, putative, expressed"	Medtr5g005600.1	Protein of unknown function DUF1005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3705.1.A1_s_at	A	A1TS	POPTR_0011s11620	POPTR_0011s11620 (11)	scaffold_11:14416635-14417122(+) (11)	NA	O80340	Ethylene-responsive transcription factor 4	AT3G15210.1	ethylene responsive element binding factor 4 	LOC_Os05g29810.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3708.1.S1_s_at	A	A1TS	POPTR_0001s13670	POPTR_0001s13670 (11)	scaffold_1:10765085-10765638(+) (11)	NA	NA	NA	AT1G27290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g32960.2	expressed protein	Medtr3g104180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.371.1.S1_at	A	A1TS	POPTR_0013s14760	POPTR_0013s14760 (11)	scaffold_13:14903064-14903137(-) (11)	POPTR_0013s14770 (7)	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.371.1.S1_x_at	A	A1TS	POPTR_0013s14760	POPTR_0013s14760 (10)	scaffold_13:14903064-14910194(-) (11)	POPTR_0013s14770 (7)	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3710.1.S1_at	A	A1MS	POPTR_0001s33270	POPTR_0001s33270 (9)	scaffold_1:31465305-31465750(-) (9)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.3711.1.S1_s_at	A	A1TS	POPTR_0011s03350	POPTR_0011s03350 (11)	scaffold_11:3502815-3503286(+) (11)	NA	NA	NA	AT1G61740.1	Sulfite exporter TauE/SafE family protein 	LOC_Os01g57710.1	"membrane protein, putative, expressed"	Medtr2g010790.1	Protein of unknown function DUF81 	NA	NA	GO:0016021|integral to membrane
Ptp.3712.1.S1_at	A	A1TS	POPTR_0018s03430	POPTR_0018s03430 (11)	scaffold_18:3012079-3012231(+) (11)	NA	Q9SJA7	Probable sarcosine oxidase	AT2G24580.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g32290.2	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr3g133200.1	NAD-binding site 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3713.1.S1_s_at	A	A1TS	POPTR_0011s12360	POPTR_0011s12360 (11)	scaffold_11:15083519-15083939(-) (11)	NA	NA	NA	AT4G27430.2	COP1-interacting protein 7 	LOC_Os07g26440.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3714.1.S1_s_at	A	A1TS	POPTR_0005s27510	POPTR_0005s27510 (11)	scaffold_5:25136636-25136698(-) (11)	NA	P93006	Probable protein phosphatase 2C 27	AT2G33700.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr3g160100.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3714.2.A1_s_at	A	A1TS	POPTR_0002s00880	POPTR_0002s00880 (11)	scaffold_2:415394-415664(+) (11)	NA	P93006	Probable protein phosphatase 2C 27	AT2G33700.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr3g160100.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3716.1.S1_s_at	A	A1TS	POPTR_0002s06620	POPTR_0002s06620 (11)	scaffold_2:4437839-4438093(-) (11)	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3716.2.S1_s_at	A	A1MS	POPTR_0002s06620	POPTR_0002s06620 (11)	scaffold_2:4438421-4438730(-) (11)	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.372.1.A1_at	A	A1TS	POPTR_0016s12090	POPTR_0016s12090 (10)	scaffold_16:11352647-11352870(-) (10)	NA	Q8L9T7	Histidine-containing phosphotransfer protein 5	AT1G03430.1	histidine-containing phosphotransfer factor 5 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr1g111080.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
Ptp.3720.1.S1_at	A	A1TS	POPTR_0007s04420	POPTR_0007s04420 (10)	scaffold_7:2736039-2736379(-) (10)	NA	Q55EX9	Putative methyltransferase DDB_G0268948	AT5G10830.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g40660.1	"methyltransferase, putative, expressed"	Medtr7g107220.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.3722.1.S1_s_at	A	A1TS	POPTR_0009s08380	POPTR_0009s08380 (11)	scaffold_9:7693590-7694393(-) (11)	NA	NA	NA	AT5G64460.8	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g121830.1	"phosphoglycerate mutase-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3723.1.S1_at	A	A1TS	POPTR_0019s08450	POPTR_0019s08450 (9)	scaffold_19:9997012-9998730(+) (9)	NA	Q42656	Alpha-galactosidase	AT3G56310.1	Melibiase family protein 	LOC_Os07g48160.1	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3724.1.S1_at	A	A1MS	POPTR_0011s02390	POPTR_0011s02390 (9)	scaffold_11:2287250-2287629(-) (9)	NA	Q54JP5	Probable ornithine aminotransferase	AT5G46180.1	ornithine-delta-aminotransferase 	LOC_Os03g44150.1	"aminotransferase, putative, expressed"	Medtr3g163620.1	"Glutamate-1-semialdehyde-2,1-aminomutase; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.3725.1.S1_at	A	A1TS	POPTR_0003s03680	POPTR_0003s03680 (10)	scaffold_3:4329943-4330243(-) (10)	NA	NA	NA	AT2G02410.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298); Has 1151 Blast hits to 1151 proteins in 597 species: Archae - 0; Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os03g62610.1	"RNA-binding protein containing a PIN domain, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3728.1.S1_s_at	A	A1TS	POPTR_0016s02090	POPTR_0016s02090 (11)	scaffold_16:1006166-1007001(+) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT3G22260.3	Cysteine proteinases superfamily protein 	LOC_Os02g07210.4	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.373.1.A1_s_at	A	A1TS	POPTR_0005s07020	POPTR_0005s07020 (11)	scaffold_5:4704800-4705304(-) (11)	NA	Q9FFN4	Beta-galactosidase 6	AT5G63800.1	Glycosyl hydrolase family 35 protein 	LOC_Os05g35360.1	"beta-galactosidase 7 precursor, putative, expressed"	Medtr3g142640.1	Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3730.1.A1_at	A	A1TS	POPTR_0003s12890	POPTR_0003s12890 (11)	scaffold_3:13330845-13331183(+) (11)	NA	Q91WL8	WW domain-containing oxidoreductase	AT4G23420.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3731.1.S1_at	A	A1TS	POPTR_0013s15440	POPTR_0013s15440 (11)	scaffold_13:15425347-15425803(-) (11)	NA	O04682	Pathogenesis-related genes transcriptional activator PTI6	AT4G27950.1	cytokinin response factor 4 	LOC_Os01g46870.1	"AP2 domain containing protein, expressed"	Medtr3g124710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3732.2.A1_at	A	A1MS	POPTR_0017s05500	POPTR_0017s05500 (10)	scaffold_17:4356623-4356834(+) (10)	NA	Q8LDW8	"Probable hydroxyacylglutathione hydrolase 2, chloroplast"	AT1G06130.2	glyoxalase 2-4 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3735.1.S1_s_at	A	A1TS	POPTR_0019s02560	POPTR_0019s02560 (11)	scaffold_19:2328613-2328844(-) (11)	NA	P29421	Alpha-amylase/subtilisin inhibitor	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.3736.1.A1_at	A	A1TS	POPTR_0016s09980	POPTR_0016s09980 (11)	scaffold_16:8105388-8106258(-) (11)	NA	NA	NA	AT3G54020.1	Arabidopsis Inositol phosphorylceramide synthase 1 	LOC_Os01g63060.1	"phosphatidic acid phosphatase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3738.1.S1_s_at	A	A1TS	POPTR_0017s09680	POPTR_0017s09680 (11)	scaffold_17:8335089-8335555(-) (11)	NA	NA	NA	AT5G40960.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104120.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3739.1.S1_s_at	A	A1TS	POPTR_0004s03620	POPTR_0004s03620 (11)	scaffold_4:2506437-2507744(-) (11)	NA	Q53FA7	Quinone oxidoreductase PIG3	AT4G21580.1	"oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os02g56180.1	"dehydrogenase, putative, expressed"	Medtr2g014170.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.374.1.A1_a_at	A	A1TS	POPTR_0011s03020	POPTR_0011s03020 (11)	scaffold_11:2999752-2999802(+) (11)	NA	O81481	Eukaryotic translation initiation factor 4E-1	AT4G18040.1	eukaryotic translation initiation factor 4E 	LOC_Os01g73880.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr2g021870.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.374.2.A1_at	A	A1MS	POPTR_0011s03020	POPTR_0011s03020 (11)	scaffold_11:2999118-2999615(+) (11)	NA	O81481	Eukaryotic translation initiation factor 4E-1	AT4G18040.1	eukaryotic translation initiation factor 4E 	LOC_Os01g73880.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr2g021870.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.3741.1.S1_s_at	A	A1TS	POPTR_0008s13030	POPTR_0008s13030 (11)	scaffold_8:8494327-8495602(+) (11)	NA	Q9SSK5	MLP-like protein 43	AT1G70890.1	MLP-like protein 43 	NA	NA	Medtr1g034930.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.3742.2.S1_s_at	A	A1TS	POPTR_0002s06730	POPTR_0002s06730 (11)	scaffold_2:4531751-4532887(-) (11)	NA	Q6NPF9	"Thioredoxin Y1, chloroplastic"	AT1G76760.1	thioredoxin Y1 	LOC_Os01g73234.2	"thioredoxin, putative, expressed"	Medtr1g125070.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.3743.1.S1_at	A	A1TS	POPTR_0004s15270	POPTR_0004s15270 (11)	scaffold_4:15939532-15939836(+) (11)	NA	Q940H6	Serine/threonine-protein kinase SRK2E	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os03g41460.1	"CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g096830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3744.1.S1_s_at	A	A1TS	POPTR_0010s01400	POPTR_0010s01400 (9)	scaffold_10:1506997-1507466(-) (10)	NA	Q8L9T5	RING-H2 finger protein ATL2	AT3G16720.1	TOXICOS EN LEVADURA 2 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3745.1.S1_at	A	A2TS	POPTR_0014s11630	POPTR_0014s11630 (11)//POPTR_0014s11680 (10)	scaffold_14:8629501-8629929(+) (11)//scaffold_14:8660958-8661383(-) (10)	NA	Q9D0D4	Probable dimethyladenosine transferase	AT2G47420.1	Ribosomal RNA adenine dimethylase family protein 	LOC_Os10g10434.1	"dimethyladenosine transferase, putative, expressed"	Medtr3g009000.1	Ribosomal RNA adenine methylase transferase 	GO:0044260|cellular macromolecule metabolic process||GO:0000154|rRNA modification	"GO:0000179|""rRNA (adenine-N6,N6-)-dimethyltransferase activity"""	NA
Ptp.3747.1.S1_s_at	A	A1TS	POPTR_0001s15400	POPTR_0001s15400 (11)	scaffold_1:12225176-12225467(+) (11)	NA	O80341	Ethylene-responsive transcription factor 5	AT5G47230.1	ethylene responsive element binding factor 5 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3749.1.S1_at	A	A1TS	POPTR_0004s24370	POPTR_0004s24370 (11)	scaffold_4:23068981-23069585(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g48640.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034700.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3750.2.S1_at	A	A1TS	POPTR_0008s02090	POPTR_0008s02090 (11)	scaffold_8:1003899-1004106(+) (11)	NA	P46301	40S ribosomal protein S25	AT2G16360.1	Ribosomal protein S25 family protein 	LOC_Os09g39540.2	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3752.1.S1_at	A	A1TS	POPTR_0001s15700	POPTR_0001s15700 (10)	scaffold_1:12514884-12515476(-) (11)	NA	Q9FGL2	Aquaporin TIP2-3	AT5G47450.1	tonoplast intrinsic protein 2;3 	LOC_Os02g44080.1	"aquaporin protein, putative, expressed"	Medtr5g012870.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3753.1.S1_s_at	A	A3TS	POPTR_0012s00900	POPTR_0012s00900 (11)//POPTR_0012s03320 (11)//POPTR_0015s05610 (11)	scaffold_12:581384-582430(-) (11)//scaffold_12:2638607-2639655(+) (11)//scaffold_15:5952585-5953864(-) (11)	NA	Q54NM9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3	AT1G34130.1	staurosporin and temperature sensitive 3-like b 	LOC_Os04g57890.1	"oligosaccharyl transferase, putative, expressed"	Medtr6g089790.1	"Oligosaccharyl transferase, STT3 subunit "	GO:0006486|protein amino acid glycosylation	GO:0004576|oligosaccharyl transferase activity	GO:0016020|membrane
Ptp.3755.1.S1_at	A	A1TS	POPTR_0003s01820	POPTR_0003s01820 (11)	scaffold_3:1697456-1697906(+) (11)	NA	Q9FY75	Potassium transporter 7	AT5G09400.1	K+ uptake permease 7 	LOC_Os07g32530.1	"potassium transporter, putative, expressed"	Medtr2g008870.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.3758.1.S1_at	A	A1TS	POPTR_0004s17950	POPTR_0004s17950 (11)	scaffold_4:17989151-17990211(+) (11)	NA	Q9ZNT3	Actin-depolymerizing factor 5	AT2G16700.1	actin depolymerizing factor 5 	LOC_Os03g13950.1	"actin-depolymerizing factor, putative, expressed"	AC233662_56.1	"Actin-binding, cofilin/tropomyosin type AC233662.1 257418-259371 F EGN_Mt090430 200"	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.3760.1.S1_at	A	A1MS	POPTR_0006s06610	POPTR_0006s06610 (10)	scaffold_6:4803145-4803650(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3762.2.S1_s_at	A	A2TS	POPTR_0001s02430	POPTR_0003s09110 (10)//POPTR_0001s02430 (10)	scaffold_1:1882533-1883528(-) (10)//scaffold_3:10433178-10434177(+) (10)	NA	Q8H100	Probable ADP-ribosylation factor GTPase-activating protein AGD8	AT4G17890.1	ARF-GAP domain 8 	LOC_Os03g63710.1	"GTPase-activating protein, putative, expressed"	Medtr8g078470.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.3764.1.A1_s_at	A	A1TS	POPTR_0002s12950	POPTR_0002s12950 (11)	scaffold_2:9622446-9622480(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
Ptp.3765.1.S1_at	A	A1TS	POPTR_0006s01680	POPTR_0006s01680 (10)	scaffold_6:1028864-1030202(-) (10)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3767.1.S1_at	A	A1MA	POPTR_0008s19310	POPTR_0008s19310 (9)	scaffold_8:13259400-13259602(+) (9)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.3772.1.S1_at	A	A1TS	POPTR_0014s14910	POPTR_0014s14910 (10)	scaffold_14:10949299-10950270(-) (10)	NA	Q9DCQ3	Vesicle transport protein GOT1A	AT1G05785.2	Got1/Sft2-like vescicle transport protein family 	LOC_Os02g39070.2	"vesicle transport protein GOT1B, putative, expressed"	Medtr7g005950.1	Got1-like protein 	GO:0016192|vesicle-mediated transport	NA	NA
Ptp.3775.2.S1_a_at	A	A1TS	POPTR_0003s05940	POPTR_0003s05940 (11)	scaffold_3:7308261-7309121(-) (11)	NA	Q8LBK6	"Monothiol glutaredoxin-S15, mitochondrial"	AT3G15660.2	glutaredoxin 4 	LOC_Os01g34620.9	"OsGrx_S15.1 - glutaredoxin subgroup II, expressed"	Medtr2g125790.1	Glutaredoxin-related protein; Glutaredoxin active site 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.3778.1.S1_s_at	A	A1TS	POPTR_0007s14510	POPTR_0007s14510 (11)	scaffold_7:14282098-14283629(-) (11)	NA	P19446	"Malate dehydrogenase, glyoxysomal"	AT2G22780.1	peroxisomal NAD-malate dehydrogenase 1 	LOC_Os12g43630.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.378.1.A1_at	A	A1TS	POPTR_0003s06940	POPTR_0003s06940 (9)	scaffold_3:8520715-8520847(-) (9)	NA	O65351	Subtilisin-like protease	AT3G14240.1	Subtilase family protein 	LOC_Os08g35090.1	"OsSub56 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.378.1.A1_s_at	A	A1TS	POPTR_0003s06940	POPTR_0003s06940 (11)	scaffold_3:8520889-8521099(-) (11)	NA	O65351	Subtilisin-like protease	AT3G14240.1	Subtilase family protein 	LOC_Os08g35090.1	"OsSub56 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3781.1.S1_at	A	A1TS	POPTR_0007s10010	POPTR_0007s10010 (10)	scaffold_7:9616435-9616958(+) (10)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3784.1.A1_s_at	A	A1TS	POPTR_0014s08990	POPTR_0014s08990 (11)	scaffold_14:6648566-6648798(+) (11)	NA	Q99089	Common plant regulatory factor 1	AT2G46270.1	G-box binding factor 3 	LOC_Os05g49420.1	"transcription factor, putative, expressed"	Medtr7g143570.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3784.2.S1_at	A	A1TS	POPTR_0014s08990	POPTR_0014s08990 (10)	scaffold_14:6645819-6647719(+) (10)	NA	Q99089	Common plant regulatory factor 1	AT2G46270.1	G-box binding factor 3 	LOC_Os05g49420.1	"transcription factor, putative, expressed"	Medtr7g143570.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3785.1.S1_a_at	A	A1TS	POPTR_0003s13920	POPTR_0003s13920 (11)	scaffold_3:14150785-14150838(+) (11)	POPTR_0001s10550 (7)	NA	NA	AT1G64385.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 66 Blast hits to 66 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os05g49750.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3786.1.S1_at	A	A1TS	POPTR_0003s13250	POPTR_0003s13250 (9)	scaffold_3:13643288-13643715(+) (9)	NA	O04609	WRKY transcription factor 22	AT4G01250.1	WRKY family transcription factor 	LOC_Os02g16540.1	"OsWRKY39v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088890.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3788.1.A1_s_at	A	A1MS	POPTR_0014s10460	POPTR_0014s10460 (11)	scaffold_14:7809151-7809443(-) (11)	NA	NA	NA	AT4G01575.1	"serine protease inhibitor, Kazal-type family protein "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3790.1.S1_s_at	A	A1TS	POPTR_0009s05140	POPTR_0009s05140 (11)	scaffold_9:5298658-5298910(+) (11)	NA	Q06716	ATP-dependent Clp protease ATP-binding subunit ClpL	AT1G07200.2	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3791.1.S1_s_at	A	A1TS	POPTR_0012s04620	POPTR_0012s04620 (11)	scaffold_12:3956341-3956617(+) (11)	NA	Q9LMS3	Laccase-1	AT1G18140.1	laccase 1 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3792.1.S1_s_at	A	A1TS	POPTR_0014s08830	POPTR_0014s08830 (11)	scaffold_14:6535487-6535740(-) (11)	NA	Q5RFQ0	rRNA-processing protein FCF1 homolog	AT2G46230.1	PIN domain-like family protein 	LOC_Os06g06410.2	"rRNA-processing protein FCF, putative, expressed"	Medtr7g143410.1	"Nucleotide binding protein, PINc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3793.1.S1_at	A	A1TS	POPTR_0003s08760	POPTR_0003s08760 (11)	scaffold_3:10137658-10138516(-) (11)	NA	P49359	"Glycine cleavage system H protein, mitochondrial"	AT1G32470.1	Single hybrid motif superfamily protein 	LOC_Os10g37180.1	"glycine cleavage system H protein, putative, expressed"	Medtr5g014430.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
Ptp.3793.1.S1_s_at	A	A1TS	POPTR_0003s08760	POPTR_0003s08760 (11)	scaffold_3:10137713-10138774(-) (11)	NA	P49359	"Glycine cleavage system H protein, mitochondrial"	AT1G32470.1	Single hybrid motif superfamily protein 	LOC_Os10g37180.1	"glycine cleavage system H protein, putative, expressed"	Medtr5g014430.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
Ptp.3799.1.S1_s_at	A	A1TS	POPTR_0007s00370	POPTR_0007s00370 (11)	scaffold_7:124194-124710(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g151520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.380.1.A1_s_at	A	A1TS	POPTR_0016s14080	POPTR_0016s14080 (11)	scaffold_16:13322009-13322332(+) (11)	NA	NA	NA	AT2G38370.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr3g097420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.380.2.S1_at	A	A1TS	POPTR_0016s14080	POPTR_0016s14080 (9)	scaffold_16:13321092-13321324(+) (9)	NA	NA	NA	AT2G38370.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr3g097420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3801.1.S1_at	A	A1TA	POPTR_0002s05850	POPTR_0002s05850 (9)	scaffold_2:3843552-3844026(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3802.1.A1_a_at	A	A1TS	POPTR_0002s16150	POPTR_0002s16150 (11)	scaffold_2:12068425-12068579(+) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g40100.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.3802.1.A1_at	A	A1TS	POPTR_0002s16150	POPTR_0002s16150 (10)	scaffold_2:12067591-12068393(+) (10)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g40100.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.3803.2.A1_a_at	A	A1TS	POPTR_0006s03560	POPTR_0006s03560 (11)	scaffold_6:2328759-2329407(-) (11)	NA	Q9M1K1	Transcription factor ORG2	AT3G56970.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g72370.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g107450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.3804.1.S1_at	A	A1TS	POPTR_0013s10120	POPTR_0013s10120 (10)	scaffold_13:10116492-10117490(+) (10)	NA	Q9FIJ7	"Probable adenylate kinase 2, chloroplastic"	AT5G47840.1	adenosine monophosphate kinase 	LOC_Os08g01770.1	"adenylate kinase, putative, expressed"	Medtr4g041640.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.3805.1.S1_at	A	A1TS	POPTR_0017s11420	POPTR_0017s11420 (11)	scaffold_17:11184814-11185062(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os05g51420.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g113260.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3806.1.A1_at	A	A1TS	POPTR_0005s24860	POPTR_0005s24860 (11)	scaffold_5:23290522-23290951(+) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G28540.1	casein kinase I-like 6 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3808.2.S1_at	A	A1MS	POPTR_0013s15740	POPTR_0013s15740 (11)	scaffold_13:15640011-15640744(+) (11)	NA	Q8K2U2	Probable alpha-ketoglutarate-dependent dioxygenase ABH6	AT4G20350.2	oxidoreductases 	LOC_Os10g28410.1	"GA19388-PA, putative, expressed"	Medtr6g070830.1	"Alkylated DNA repair protein alkB homolog 6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3809.1.S1_at	A	A1TS	POPTR_0010s06630	POPTR_0010s06630 (10)	scaffold_10:7926270-7926488(+) (10)//scaffold_468:4819-5021(-) (9)	NA	NA	NA	AT1G27850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink). 	LOC_Os12g13670.2	expressed protein	Medtr3g103410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3810.1.S1_at	A	A1TS	POPTR_0001s40000	POPTR_0001s40000 (11)	scaffold_1:39326344-39326618(-) (11)//scaffold_1:39340564-39340858(-) (11)	NA	P16273	Pathogen-related protein	AT1G78780.2	pathogenesis-related family protein 	LOC_Os01g53090.1	"pathogen-related protein, putative, expressed"	Medtr8g068150.1	"Pathogen-related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3811.2.S1_s_at	A	A1TS	POPTR_0013s04660	POPTR_0013s04660 (11)	scaffold_13:3206621-3207350(+) (11)	NA	P46976	Glycogenin-1	AT5G18480.1	plant glycogenin-like starch initiation protein 6 	LOC_Os02g41520.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g093950.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.3812.1.S1_s_at	A	A1TS	POPTR_0014s17720	POPTR_0014s17720 (11)	scaffold_14:13978835-13980337(-) (11)	NA	O23051	Ent-kaurenoic acid oxidase 1	AT1G05160.1	"cytochrome P450, family 88, subfamily A, polypeptide 3 "	LOC_Os06g02019.1	"cytochrome P450, putative, expressed"	Medtr5g014420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3813.1.S1_at	A	A1TS	POPTR_0009s03230	POPTR_0009s03230 (11)	scaffold_9:3922344-3922834(+) (11)	NA	O82598	Aquaporin TIP1-3	AT4G01470.1	tonoplast intrinsic protein 1;3 	LOC_Os01g74450.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3814.1.S1_s_at	A	A1TS	POPTR_0017s00400	POPTR_0017s00400 (11)	scaffold_17:124771-125527(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3815.1.S1_at	A	A1TS	POPTR_0009s15990	POPTR_0009s15990 (10)	scaffold_9:12252795-12253742(+) (10)	NA	Q9ZUH5	Short-chain dehydrogenase/reductase 2	AT2G24190.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g48640.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr3g111280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3818.1.A1_s_at	A	A1TS	POPTR_0002s15100	POPTR_0002s15100 (11)	scaffold_2:11204334-11205560(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.1	WD-40 repeat family protein / beige-related 	LOC_Os04g46894.1	"beige/BEACH domain containing protein, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3819.1.S1_at	A	A1TS	POPTR_0007s03630	POPTR_0007s03630 (10)	scaffold_7:2085133-2085507(+) (10)	NA	P13087	Miraculin	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.3821.1.S1_s_at	A	A1TS	POPTR_0016s14220	POPTR_0016s14220 (11)	scaffold_16:13454647-13455169(+) (11)	NA	NA	NA	AT3G51610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os05g07640.1	expressed protein	Medtr7g080110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3822.1.S1_s_at	A	A1TS	POPTR_0005s08630	POPTR_0005s08630 (11)	scaffold_5:5997894-5997988(-) (11)	NA	NA	NA	AT2G21960.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 	LOC_Os04g54640.1	"peptidase, cysteine peptidase active site, putative, expressed"	Medtr2g077520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3823.1.S1_at	A	A1TS	POPTR_0007s15300	POPTR_0007s15300 (10)	scaffold_7:14880074-14880548(+) (10)	NA	NA	NA	AT3G19990.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). "	LOC_Os02g58150.1	expressed protein	Medtr1g047000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3824.1.S1_at	A	A1TS	POPTR_0001s22670	POPTR_0001s22670 (11)	scaffold_1:21562102-21562237(+) (11)	NA	Q9FMR5	Vesicle-associated membrane protein 714	AT5G22360.1	vesicle-associated membrane protein 714 	LOC_Os10g06540.1	"vesicle-associated membrane protein, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.3826.1.A1_s_at	A	A2TS	POPTR_0004s03290	POPTR_0004s03290 (11)//POPTR_0004s03300 (11)	scaffold_4:2241986-2242577(+) (11)//scaffold_4:2247093-2247703(+) (11)	NA	P43177	Major pollen allergen Bet v 1-D/H	NA	NA	LOC_Os12g36880.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.3827.1.S1_at	A	A1TS	POPTR_0019s04090	POPTR_0019s04090 (9)	scaffold_19:4172593-4173631(-) (10)	NA	Q92616	Translational activator GCN1	AT1G64790.1	ILITYHIA 	LOC_Os03g51140.1	"HEAT repeat family protein, putative, expressed"	Medtr7g143040.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3828.1.A1_at	A	A1TS	POPTR_0017s11500	POPTR_0017s11500 (11)	scaffold_17:11241898-11242372(-) (11)	NA	Q42510	Pattern formation protein EMB30	AT1G13980.2	sec7 domain-containing protein 	LOC_Os03g46330.1	"pattern formation protein EMB30, putative, expressed"	Medtr5g087940.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
Ptp.3829.1.S1_at	A	A1TS	POPTR_0003s16460	POPTR_0003s16460 (11)	scaffold_3:16053548-16053927(+) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT3G43740.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g32580.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr7g005120.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.3831.1.S1_at	A	A1TS	POPTR_0016s14560	POPTR_0016s14560 (11)	scaffold_16:13751554-13751709(+) (11)	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g56330.1	"TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3832.1.S1_at	A	A1TS	POPTR_0014s16060	POPTR_0014s16060 (10)	scaffold_14:12150885-12151266(+) (10)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.2	"OsFBX331 - F-box domain containing protein, expressed"	Medtr3g008640.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3835.1.S1_at	A	A1TS	POPTR_0491s00200	POPTR_0491s00200 (11)	scaffold_491:9865-9981(-) (11)	NA	NA	NA	AT3G59680.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g41860.1	expressed protein	Medtr4g128470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3836.1.A1_at	A	A1TS	POPTR_0015s05530	POPTR_0015s05530 (11)	scaffold_15:5860556-5861219(-) (11)	NA	P0C042	Uncharacterized protein At4g15970	AT1G14590.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os04g49590.1	"regulatory protein, putative, expressed"	Medtr6g090280.1	"Uncharacterized protein At4g15970, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3838.2.S1_at	A	A1TA	POPTR_0014s04050	POPTR_0014s04050 (11)	scaffold_14:3221665-3221758(+) (11)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT5G42610.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3839.1.S1_at	A	A1TS	POPTR_0006s08450	POPTR_0006s08450 (11)	scaffold_6:6166511-6168251(+) (11)	NA	Q8LCY2	"Iron-sulfur assembly protein IscA-like 2, mitochondrial"	AT5G03905.1	Iron-sulphur cluster biosynthesis family protein 	LOC_Os08g28230.1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"	Medtr7g127380.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.384.1.A1_at	A	A1TS	POPTR_0016s06230	POPTR_0016s06230 (9)	scaffold_16:4171532-4171764(-) (9)	NA	NA	NA	AT5G06610.1	Protein of unknown function (DUF620) 	LOC_Os03g07120.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3840.1.S1_s_at	A	A1TS	POPTR_0015s12020	POPTR_0015s12020 (11)	scaffold_15:12456399-12462942(+) (11)	NA	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129900.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3842.1.A1_a_at	A	A1TS	POPTR_0003s20270	POPTR_0003s20270 (11)	scaffold_3:18793711-18795198(+) (11)	NA	NA	NA	AT5G13470.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g71262.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3846.1.S1_at	A	A1TS	POPTR_0003s08140	POPTR_0003s08140 (11)	scaffold_3:9563160-9563827(-) (11)	NA	O23547	Expansin-like B1	AT4G17030.1	expansin-like B1 	LOC_Os07g31390.1	"beta-expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3846.1.S1_s_at	A	A1TS	POPTR_0003s08140	POPTR_0003s08140 (11)	scaffold_3:9563194-9563695(-) (11)	NA	O23547	Expansin-like B1	AT4G17030.1	expansin-like B1 	LOC_Os07g31390.1	"beta-expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3849.1.S1_at	A	A1TS	POPTR_0015s06800	POPTR_0015s06800 (9)	scaffold_15:7842906-7842940(+) (9)	NA	P27694	Replication protein A 70 kDa DNA-binding subunit	AT5G08020.1	RPA70-kDa subunit B 	LOC_Os03g11540.1	"RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.3849.1.S1_s_at	A	A1TS	POPTR_0015s06800	POPTR_0015s06800 (11)	scaffold_15:7843010-7843664(+) (11)	NA	P27694	Replication protein A 70 kDa DNA-binding subunit	AT5G08020.1	RPA70-kDa subunit B 	LOC_Os03g11540.1	"RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.3853.1.S1_at	A	A1MS	POPTR_0012s07910	POPTR_0012s07910 (9)	scaffold_12:8907113-8907628(+) (9)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50840.2	"BAH domain containing protein, putative, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
Ptp.3855.1.S1_a_at	A	A1TS	POPTR_0009s04320	POPTR_0009s04320 (9)	scaffold_9:4750331-4750427(+) (9)	NA	NA	NA	AT5G59080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3855.1.S1_s_at	A	A1TS	POPTR_0009s04320	POPTR_0009s04320 (11)	scaffold_9:4749307-4749755(+) (11)	NA	NA	NA	AT5G59080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3856.1.S1_s_at	A	A1TS	POPTR_0006s28210	POPTR_0006s28210 (11)	scaffold_6:25977173-25979413(-) (11)	NA	Q6GR43	Transmembrane protein 85	AT5G10780.1	"CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g24580.1	"transmembrane protein 85, putative, expressed"	Medtr1g016570.1	Protein of unknown function DUF1077 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3857.1.S1_s_at	A	A1TS	POPTR_0010s02450	POPTR_0010s02450 (11)	scaffold_10:2835082-2835773(-) (11)	POPTR_0008s22590 (7)	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.3858.1.S1_at	A	A1TS	POPTR_0007s12660	POPTR_0007s12660 (11)	scaffold_7:12913377-12913781(+) (11)	NA	Q9FGY4	F-box protein At5g49610	AT5G49610.1	F-box family protein 	LOC_Os03g56500.1	expressed protein	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.386.2.A1_s_at	A	A1TS	POPTR_0011s13380	POPTR_0011s13380 (11)	scaffold_11:16145068-16145110(+) (11)	NA	Q43472	Glycine-rich RNA-binding protein blt801	AT5G54580.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g04440.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g118370.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3864.1.S1_at	A	A1TS	POPTR_0017s12050	POPTR_0017s12050 (9)	scaffold_17:12177951-12178578(-) (9)	NA	NA	NA	AT3G01175.1	Protein of unknown function (DUF1666) 	LOC_Os09g24700.1	expressed protein	Medtr7g009560.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3865.2.S1_a_at	A	A1TS	POPTR_0019s10370	POPTR_0019s10370 (10)	scaffold_19:11930865-11933988(-) (10)	NA	NA	NA	AT1G71480.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os09g09320.1	"nuclear transport factor, putative, expressed"	NA	NA	GO:0006810|transport	NA	GO:0005622|intracellular
Ptp.3867.1.S1_s_at	A	A1TS	POPTR_0005s17300	POPTR_0005s17300 (11)	scaffold_5:14610890-14612201(+) (11)	NA	P46266	14-3-3-like protein	AT1G78300.1	general regulatory factor 2 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.3869.1.S1_at	A	A1TS	POPTR_0007s14630	POPTR_0007s14630 (9)	scaffold_7:14381789-14382314(+) (9)	NA	Q9M2Y9	Transcription factor RAX3	AT3G49690.1	myb domain protein 84 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.387.1.A1_a_at	A	A1TS	POPTR_0010s05400	POPTR_0010s05400 (11)	scaffold_10:6862014-6862458(+) (11)	NA	Q8LPT9	"Alpha-glucan water dikinase, chloroplastic"	AT1G10760.1	"Pyruvate phosphate dikinase, PEP/pyruvate binding domain "	LOC_Os06g30310.1	"alpha-glucan water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.3870.1.S1_s_at	A	A1TS	POPTR_0015s00840	POPTR_0015s00840 (11)	scaffold_15:490255-490426(+) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.3871.1.S1_s_at	A	A1TS	POPTR_0003s06090	POPTR_0003s06090 (11)	scaffold_3:7497936-7498403(-) (11)	NA	NA	NA	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr8g119830.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3872.1.S1_at	A	A1TS	POPTR_0017s03410	POPTR_0017s03410 (10)	scaffold_17:2496824-2497333(-) (10)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.3874.2.S1_at	A	A1MS	POPTR_0014s08180	POPTR_0014s08180 (9)	scaffold_14:6071430-6071598(-) (9)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.2	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3875.1.S1_s_at	A	A1MS	POPTR_0005s07840	POPTR_0005s07840 (11)	scaffold_5:5384443-5385293(+) (11)	NA	Q5SUC9	"Protein SCO1 homolog, mitochondrial"	AT4G39740.1	Thioredoxin superfamily protein 	LOC_Os09g20430.1	"SCO1 protein homolog, mitochondrial precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3876.1.S1_s_at	A	A1TS	POPTR_0001s28740	POPTR_0001s28740 (11)	scaffold_1:27507560-27508691(+) (11)	NA	P0C895	LRR repeats and ubiquitin-like domain-containing protein At2g30105	AT2G30105.1	"CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1). "	LOC_Os10g31790.1	"ubiquitin family protein, putative, expressed"	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.3877.1.S1_at	A	A1TS	POPTR_0014s03220	POPTR_0014s03220 (10)	scaffold_14:2567364-2567397(+) (10)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.3877.1.S1_s_at	A	A1TS	POPTR_0014s03220	POPTR_0014s03220 (11)	scaffold_14:2566876-2567420(+) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.3879.1.S1_at	A	A1TS	POPTR_0008s09660	POPTR_0008s09660 (11)	scaffold_8:5968698-5968917(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3880.1.S1_at	A	A1TS	POPTR_0005s01900	POPTR_0005s01900 (9)	scaffold_5:1246654-1247068(+) (9)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g15010.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3881.1.S1_a_at	A	A3TS	POPTR_0004s10690	POPTR_0004s10750 (10)//POPTR_0004s10770 (10)//POPTR_0004s10690 (10)	scaffold_4:9226131-9226173(+) (10)//scaffold_4:9281046-9281088(+) (10)//scaffold_4:9301021-9301063(+) (10)//scaffold_4:9316667-9316709(+) (10)	NA	NA	NA	AT5G38760.1	Late embryogenesis abundant protein (LEA) family protein 	NA	NA	Medtr2g074350.1	"pollen coat-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3882.1.S1_at	A	A1TS	POPTR_0001s15180	POPTR_0001s15180 (11)	scaffold_1:12028741-12029816(-) (11)	NA	Q9LD45	Bax inhibitor 1	AT5G47120.1	BAX inhibitor 1 	LOC_Os02g03280.2	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr5g013460.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3883.1.S1_s_at	A	A1TS	POPTR_0018s07410	POPTR_0018s07410 (11)	scaffold_18:7718764-7718804(+) (11)	NA	O65282	"20 kDa chaperonin, chloroplastic"	AT5G20720.3	chaperonin 20 	LOC_Os09g26730.1	"chaperonin, putative, expressed"	Medtr8g132830.1	GroES-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.3885.1.S1_s_at	A	A1TS	POPTR_0001s02260	POPTR_0001s02260 (11)	scaffold_1:1721604-1721693(+) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G17790.1	SNARE associated Golgi protein family 	LOC_Os02g46660.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3889.1.S1_s_at	A	A1TS	POPTR_0013s15500	POPTR_0013s15500 (11)	scaffold_13:15448653-15449090(-) (11)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.389.1.A1_s_at	A	A1TS	POPTR_0007s06010	POPTR_0007s06010 (10)	scaffold_7:4149551-4149586(-) (10)	NA	Q9SNC6	U-box domain-containing protein 13	AT2G22125.1	binding 	LOC_Os06g11990.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3890.1.S1_at	A	A1TS	POPTR_0008s02860	POPTR_0008s02860 (10)	scaffold_8:1458633-1459503(-) (10)	NA	Q07469	Bark storage protein A	AT4G24350.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
Ptp.3891.1.S1_s_at	A	A1TS	POPTR_0008s20860	POPTR_0008s20860 (10)	scaffold_8:14861494-14861931(+) (10)	NA	NA	NA	AT3G06070.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g146290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3892.1.S1_at	A	A1TS	POPTR_0010s13360	POPTR_0010s13360 (9)	scaffold_10:13197025-13197534(-) (9)	NA	NA	NA	AT1G68450.1	VQ motif-containing protein 	LOC_Os08g01260.1	"VQ domain containing protein, putative"	Medtr1g140810.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3894.1.S1_s_at	A	A2TS	POPTR_0001s24250	POPTR_0001s24250 (10)//POPTR_1833s00200 (9)	scaffold_1:23601484-23601917(+) (10)//scaffold_1833:84-515(+) (11)	NA	NA	NA	AT2G37430.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g02390.1	"ZOS5-02 - C2H2 zinc finger protein, expressed"	Medtr7g024970.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3899.1.S1_s_at	A	A1TS	POPTR_0001s01460	POPTR_0001s01460 (11)	scaffold_1:1091779-1092291(+) (11)	NA	P42735	Cadmium-induced protein AS8	AT4G19070.1	Putative membrane lipoprotein 	LOC_Os07g05040.1	"cadmium-induced protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.39.1.A1_a_at	A	A2TS	POPTR_0017s13830	POPTR_0017s13830 (11)//POPTR_0571s00200 (10)	scaffold_17:14048896-14051866(-) (11)//scaffold_571:1506-4419(+) (11)	NA	NA	NA	AT5G16060.1	Cytochrome c oxidase biogenesis protein Cmc1-like 	LOC_Os03g15240.1	hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.390.2.A1_s_at	A	A1MS	POPTR_0002s20660	POPTR_0002s20660 (11)	scaffold_2:16737966-16738367(+) (11)	NA	Q8LEA8	Phytochrome A-associated F-box protein	AT4G02440.1	F-box family protein 	LOC_Os05g30190.1	"phytochrome A-associated F-box protein, putative, expressed"	Medtr8g068260.1	"Phytochrome A-associated F-box protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3902.1.S1_at	A	A1TS	POPTR_0005s13830	POPTR_0005s13830 (11)	scaffold_5:10838590-10838920(-) (11)	NA	Q41495	STS14 protein	AT5G66590.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os07g03710.1	"SCP-like extracellular protein, expressed"	AC233653_7.1	"STS14 protein precursor, putative AC233653.2 29577-30147 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3903.1.S1_at	A	A1TS	POPTR_0003s10420	POPTR_0003s10420 (11)	scaffold_3:11411201-11411513(-) (11)	NA	P31133	Putrescine-binding periplasmic protein	AT1G31410.1	putrescine-binding periplasmic protein-related 	LOC_Os04g51310.1	"putrescine-binding periplasmic protein-related, putative, expressed"	Medtr8g086300.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3905.1.S1_s_at	A	A1TS	POPTR_0007s14250	POPTR_0007s14250 (11)	scaffold_7:14089267-14089847(-) (11)	NA	Q9T074	Phosphoenolpyruvate carboxykinase [ATP]	AT4G37870.1	phosphoenolpyruvate carboxykinase 1 	LOC_Os03g15050.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	Medtr5g032160.1	Phosphoenolpyruvate carboxykinase (ATP); 	GO:0044283|small molecule biosynthetic process||GO:0006094|gluconeogenesis||GO:0044281|small molecule metabolic process	GO:0004612|phosphoenolpyruvate carboxykinase (ATP) activity||GO:0005524|ATP binding	NA
Ptp.3911.1.S1_s_at	A	A1TS	POPTR_0014s16250	POPTR_0014s16250 (11)	scaffold_14:12331116-12331929(-) (11)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT5G35740.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g105130.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3912.1.S1_a_at	A	A1TS	POPTR_0003s11950	POPTR_0003s11950 (11)	scaffold_3:12658961-12659294(-) (11)	NA	NA	NA	AT4G22920.1	non-yellowing 1 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.1	"senescence-inducible chloroplast stay-green protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3914.1.S1_at	A	A1TS	POPTR_0002s23690	POPTR_0002s23690 (11)	scaffold_2:21230992-21231534(+) (11)	NA	Q8L5T9	Cysteine proteinase inhibitor 2	AT2G31980.1	PHYTOCYSTATIN 2 	LOC_Os04g28250.1	"cysteine proteinase inhibitor precursor, putative, expressed"	Medtr3g104370.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.3915.2.S1_a_at	A	A1TS	POPTR_0006s12360	POPTR_0006s12360 (11)	scaffold_6:9523238-9524163(+) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G22920.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os03g05270.2	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr4g076230.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3918.1.S1_at	A	A1TS	POPTR_0015s10530	POPTR_0015s10530 (11)	scaffold_15:11423049-11424829(-) (11)	NA	Q8HSW1	"Adenylate kinase, chloroplastic"	AT3G01820.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g02540.1	"adenylate kinase, putative, expressed"	Medtr7g120720.1	"Adenylate/cytidine kinase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3920.1.S1_at	A	A2TS	POPTR_0016s02370	POPTR_0016s02370 (10)//POPTR_0016s02350 (9)	scaffold_16:1160090-1160494(+) (10)//scaffold_16:1172561-1172968(+) (10)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr7g071180.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3920.2.S1_s_at	A	A1TS	POPTR_0004s17520	POPTR_0004s17520 (11)	scaffold_4:17690700-17690946(-) (11)	NA	NA	NA	AT4G32090.1	"Beta-1,3-N-Acetylglucosaminyltransferase family protein "	LOC_Os02g30780.1	"LGC1, putative, expressed"	Medtr2g080840.1	"Glycosyl transferase, family 31 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3921.1.S1_s_at	A	A1TS	POPTR_0017s00870	POPTR_0017s00870 (10)	scaffold_17:649629-651706(-) (10)	NA	Q2KIK0	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3924.1.S1_s_at	A	A1TS	POPTR_0005s14430	POPTR_0005s14430 (11)	scaffold_5:11468476-11468526(+) (11)	NA	Q9C8Y1	Probable calcium-binding protein CML23	AT1G66400.1	calmodulin like 23 	LOC_Os05g13580.1	"OsCML18 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g086860.1	"Calcium-binding protein, S-100/ICaBP type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3925.1.S1_at	A	A1TS	POPTR_0005s24610	POPTR_0005s24610 (9)	scaffold_5:23092729-23093096(-) (9)	NA	P09802	Legumin A	AT5G44120.3	RmlC-like cupins superfamily protein 	LOC_Os01g55690.1	"glutelin, putative, expressed"	Medtr1g086770.1	11-S plant seed storage protein 	NA	GO:0045735|nutrient reservoir activity	NA
Ptp.3928.1.A1_at	A	A1TS	POPTR_0013s03000	POPTR_0013s03000 (9)	scaffold_13:1820602-1821388(+) (11)	NA	NA	NA	AT5G27290.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g28540.1	"stress regulated protein, putative, expressed"	Medtr7g139860.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.393.2.S1_at	A	A1TS	POPTR_0018s03560	POPTR_0018s03560 (11)	scaffold_18:3086484-3086742(-) (11)	NA	Q9SV21	Coatomer subunit beta-1	AT4G31480.2	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138720.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
Ptp.3930.1.S1_s_at	A	A1TS	POPTR_0015s04970	POPTR_0015s04970 (11)	scaffold_15:5194587-5195364(-) (11)	NA	Q9LE73	Nudix hydrolase 4	AT1G18300.1	nudix hydrolase homolog 4 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr6g080940.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.3931.1.A1_a_at	A	A1TS	POPTR_0015s03420	POPTR_0015s03420 (11)	scaffold_15:2949853-2950756(-) (11)	NA	Q3U1Y4	DENN domain-containing protein 4B	AT1G49040.1	stomatal cytokinesis defective / SCD1 protein (SCD1) 	LOC_Os01g39380.1	"SCD1, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3932.1.S1_at	A	A1TS	POPTR_0007s04840	POPTR_0007s04840 (10)	scaffold_7:3025027-3025639(-) (10)	NA	P43273	Transcription factor TGA2	AT3G14880.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g06560.1	"transcription factor HBP-1b, putative, expressed"	Medtr4g143910.1	"tumor-related protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3934.1.S1_at	A	A1TS	POPTR_0010s12610	POPTR_0010s12610 (10)	scaffold_10:12601241-12602108(+) (10)	NA	Q7ZWL6	Repressor of RNA polymerase III transcription MAF1 homolog	AT5G13240.1	transcription regulators 	LOC_Os04g56730.3	"repressor of RNA polymerase III transcription MAF1, putative, expressed"	Medtr1g137700.1	"Repressor of RNA polymerase III transcription MAF1 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3935.1.A1_at	A	A1TS	POPTR_0001s29340	POPTR_0001s29340 (10)	scaffold_1:28062169-28063481(+) (10)	NA	A2CER7	Protein spinster homolog 3	AT5G64500.1	Major facilitator superfamily protein 	LOC_Os04g44430.1	"transporter, major facilitator family, putative, expressed"	Medtr4g121900.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3935.2.S1_a_at	A	A1TS	POPTR_0001s29340	POPTR_0001s29340 (11)	scaffold_1:28054645-28056069(+) (11)	NA	A2CER7	Protein spinster homolog 3	AT5G64500.1	Major facilitator superfamily protein 	LOC_Os04g44430.1	"transporter, major facilitator family, putative, expressed"	Medtr4g121900.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3937.1.S1_s_at	A	A1TS	POPTR_0014s13660	POPTR_0014s13660 (11)	scaffold_14:10015327-10015366(-) (11)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.3940.1.S1_at	A	A1TS	POPTR_0013s02480	POPTR_0013s02480 (10)	scaffold_13:1470090-1470638(+) (10)	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3941.1.S1_at	A	A1TS	POPTR_0001s33710	POPTR_0001s33710 (11)	scaffold_1:31891212-31891655(-) (11)	NA	Q9FLN4	"50S ribosomal protein L27, chloroplastic"	AT5G40950.1	ribosomal protein large subunit 27 	LOC_Os01g69950.1	"ribosomal protein L27, putative, expressed"	Medtr3g021590.1	Ribosomal protein L27 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3942.1.S1_a_at	A	A1TS	POPTR_0001s47490	POPTR_0001s47490 (11)	scaffold_1:47663208-47663929(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3942.3.S1_at	A	A1MS	POPTR_0001s47490	POPTR_0001s47490 (11)	scaffold_1:47663934-47664182(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3943.1.S1_at	A	A1TS	POPTR_0002s25880	POPTR_0002s25880 (11)	scaffold_2:22893449-22894116(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.3943.1.S1_s_at	A	A1TS	POPTR_0002s25880	POPTR_0002s25880 (11)	scaffold_2:22893193-22893362(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.3944.1.S1_at	A	A1TS	POPTR_0015s12060	POPTR_0015s12060 (11)	scaffold_15:12474930-12475516(+) (11)	NA	NA	NA	AT5G07330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g32890.1	expressed protein	Medtr5g006680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3945.1.S1_s_at	A	A1TS	POPTR_0014s11540	POPTR_0014s11540 (11)	scaffold_14:8560756-8561131(-) (11)	NA	NA	NA	AT2G16760.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g19452.1	"SMP-30/Gluconolaconase/LRE domain protein, putative, expressed"	Medtr1g106660.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3947.1.S1_s_at	A	A1TS	POPTR_0006s05750	POPTR_0006s05750 (11)	scaffold_6:4042116-4042611(-) (11)	NA	Q05091	Polygalacturonase inhibitor	AT5G06860.1	polygalacturonase inhibiting protein 1 	LOC_Os05g01444.1	"polygalacturonase inhibitor precursor, putative, expressed"	Medtr7g111410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.3950.1.S1_at	A	A1TS	POPTR_0018s10890	POPTR_0018s10890 (11)	scaffold_18:11753701-11756102(-) (11)	NA	O94581	Cytochrome c oxidase subunit 6B	AT1G22450.1	cytochrome C oxidase 6B 	LOC_Os07g42910.1	"cytochrome c oxidase subunit, putative, expressed"	Medtr5g073800.1	"Cytochrome oxidase c, subunit VIb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
Ptp.3951.1.S1_at	A	A1TS	POPTR_0010s09920	POPTR_0010s09920 (10)	scaffold_10:10516260-10516849(-) (10)	NA	P49252	Primary amine oxidase (Fragment)	AT1G31690.1	Copper amine oxidase family protein 	LOC_Os06g23114.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr1g132560.1	Copper amine oxidase; ; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
Ptp.3953.1.S1_s_at	A	A1TS	POPTR_0003s12380	POPTR_0003s12380 (11)	scaffold_3:12970710-12972257(-) (11)	NA	Q43070	UDP-glucose 4-epimerase	AT1G12780.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 1 	LOC_Os09g35800.1	"UDP-glucose 4-epimerase, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.3954.1.S1_a_at	A	A1TS	POPTR_0019s05940	POPTR_0019s05940 (11)	scaffold_19:6355808-6355847(+) (11)	NA	NA	NA	AT1G64980.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os07g23120.1	expressed protein	Medtr5g007200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3954.1.S1_s_at	A	A1TS	POPTR_0011s11830	POPTR_0011s11830 (11)	scaffold_11:14624927-14625054(-) (11)	NA	NA	NA	AT1G64980.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os07g23120.1	expressed protein	Medtr5g007200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3957.1.S1_a_at	A	A1TS	POPTR_0010s18850	POPTR_0010s18850 (11)	scaffold_10:16973477-16974185(-) (11)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3958.1.A1_s_at	A	A1TS	POPTR_0007s10380	POPTR_0007s10380 (11)	scaffold_7:10301145-10301558(-) (11)	NA	Q8BHJ5	F-box-like/WD repeat-containing protein TBL1XR1	AT5G67320.1	WD-40 repeat family protein 	LOC_Os07g22220.1	"F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3959.1.S1_at	A	A1TS	POPTR_0017s01150	POPTR_0017s01150 (10)	scaffold_17:830201-830243(+) (10)	NA	Q9SW09	40S ribosomal protein S10-1	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.2	"Plectin/S10, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.396.1.A1_at	A	A1TS	POPTR_0001s31400	POPTR_0001s31400 (11)	scaffold_1:29727658-29728144(-) (11)	NA	Q9BRX9	WD repeat domain-containing protein 83	AT5G64730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g33860.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g141700.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3962.1.A1_s_at	A	A1TS	POPTR_0003s08220	POPTR_0003s08220 (11)	scaffold_3:9631502-9631615(-) (11)	NA	NA	NA	AT4G17070.1	peptidyl-prolyl cis-trans isomerases 	LOC_Os03g01090.1	"peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed"	Medtr5g013700.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.3963.1.S1_at	A	A1TS	POPTR_0005s01890	POPTR_0005s01890 (9)	scaffold_5:1243142-1243199(+) (9)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g15010.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3966.1.S1_at	A	A1TS	POPTR_0004s17120	POPTR_0004s17120 (11)	scaffold_4:17457941-17459433(-) (11)	NA	O65693	"Probable ribosome-binding factor A, chloroplastic"	AT4G34730.1	ribosome-binding factor A family protein 	LOC_Os06g04610.1	"ribosome-binding factor A, chloroplast precursor, putative, expressed"	Medtr3g163130.1	Ribosome-binding factor A 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	NA
Ptp.3967.1.S1_at	A	A1TS	POPTR_0017s12230	POPTR_0017s12230 (11)	scaffold_17:12434918-12435254(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT5G15310.1	myb domain protein 16 	LOC_Os08g33660.1	"MYB family transcription factor, putative, expressed"	Medtr6g013190.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3969.1.S1_s_at	A	A1TS	POPTR_0009s14340	POPTR_0009s14340 (11)	scaffold_9:11244954-11245532(+) (11)	NA	B9HQZ6	"Probable alanyl-tRNA synthetase, chloroplastic"	AT5G22800.1	"Alanyl-tRNA synthetase, class IIc "	LOC_Os06g13660.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr3g163940.1	"Alanyl-tRNA synthetase, class IIc "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006419|alanyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004813|alanine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.397.2.S1_s_at	A	A1TS	POPTR_0010s02830	POPTR_0010s02830 (11)	scaffold_10:3332105-3332581(+) (11)	NA	NA	NA	AT4G02040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3970.1.A1_a_at	A	A1TS	POPTR_0004s23690	POPTR_0004s23690 (11)	scaffold_4:22330672-22330924(+) (11)	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.3973.1.S1_x_at	A	A1TS	POPTR_0004s05590	POPTR_0004s05590 (11)	scaffold_4:4324655-4326407(+) (11)	NA	O80929	60S ribosomal protein L36-1	AT2G37600.2	Ribosomal protein L36e family protein 	LOC_Os05g38520.4	"60S ribosomal protein L36-2, putative, expressed"	Medtr1g126960.2	Ribosomal protein L36E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3974.1.S1_at	A	A1MS	POPTR_0006s06130	POPTR_0006s06130 (9)	scaffold_6:4356740-4356776(+) (9)	NA	Q39224	Protein SRG1	AT5G20400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08023.1	"flavonol synthase/flavanone 3-hydroxylase, putative"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3978.1.S1_at	A	A1TS	POPTR_0006s13190	POPTR_0006s13190 (9)	scaffold_6:10437011-10437223(+) (9)	NA	Q42580	Peroxidase 21	AT2G37130.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr1g078990.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.398.1.S1_s_at	A	A1TS	POPTR_0014s08800	POPTR_0014s08800 (11)	scaffold_14:6514706-6515010(+) (11)	NA	Q8S8M5	Protein ABIL1	AT2G46225.1	ABI-1-like 1 	LOC_Os01g43420.1	expressed protein	Medtr7g143400.1	"Protein ABIL2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3980.1.S1_at	A	A1TS	POPTR_0006s04540	POPTR_0006s04540 (11)	scaffold_6:3090806-3092243(-) (11)	NA	NA	NA	AT3G57320.1	unknown protein; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g46710.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3982.1.S1_s_at	A	A1TS	POPTR_0012s14010	POPTR_0012s14010 (11)	scaffold_12:13990581-13992112(-) (11)	NA	O82616	Putative fructokinase-5	AT5G51830.1	pfkB-like carbohydrate kinase family protein 	LOC_Os06g12600.1	"kinase, pfkB family, putative, expressed"	Medtr6g096500.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3984.1.A1_at	A	A1TS	POPTR_0006s12160	POPTR_0006s12160 (11)	scaffold_6:9319536-9320498(+) (11)	NA	Q8W013	Caffeic acid 3-O-methyltransferase	AT3G53140.1	O-methyltransferase family protein 	LOC_Os02g57760.1	"O-methyltransferase, putative, expressed"	Medtr3g143560.2	"O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.3985.1.S1_at	A	A1TS	POPTR_0015s04310	POPTR_0015s04310 (11)	scaffold_15:4382444-4384537(+) (11)	NA	Q9XFK7	Protein MOTHER of FT and TF 1	AT1G18100.1	PEBP (phosphatidylethanolamine-binding protein) family protein 	LOC_Os06g30370.1	"osMFT1  MFT-Like1 homologous to Mother of FT and TFL1  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	Medtr4g155400.1	Phosphatidylethanolamine-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3987.1.S1_at	A	A1TS	POPTR_0008s15690	POPTR_0008s15690 (10)	scaffold_8:10460700-10461290(-) (10)	NA	Q94A20	BI1-like protein	AT3G63310.1	Bax inhibitor-1 family protein 	LOC_Os03g53400.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr1g083870.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3988.1.S1_s_at	A	A1TS	POPTR_0002s22670	POPTR_0002s22670 (11)	scaffold_2:19493736-19496392(+) (11)	POPTR_0014s13940 (6)	Q05609	Serine/threonine-protein kinase CTR1	AT3G58640.2	Mitogen activated protein kinase kinase kinase-related 	LOC_Os01g48330.1	"protein kinase domain containing protein, expressed"	Medtr4g109800.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3989.1.S1_at	A	A1TS	POPTR_0004s24240	POPTR_0004s24240 (11)	scaffold_4:22952113-22952347(-) (11)	NA	NA	NA	AT5G45310.1	"unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g73110.1	expressed protein	Medtr5g025850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3990.1.S1_s_at	A	A2TS	POPTR_0003s18370	POPTR_0003s18420 (11)//POPTR_0003s18370 (11)	scaffold_3:17472970-17474490(+) (11)//scaffold_3:17506383-17507903(+) (11)	NA	NA	NA	AT1G16080.1	"unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os08g16570.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3991.1.S1_s_at	A	A1TS	POPTR_0008s20660	POPTR_0008s20660 (11)	scaffold_8:14563800-14565724(+) (11)	NA	Q9C0Y8	UPF0613 protein PB24D3.06c	AT5G19050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g11060.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3992.1.S1_at	A	A1TS	POPTR_0005s20710	POPTR_0005s20710 (9)	scaffold_5:19827639-19827999(-) (9)	NA	Q68FJ8	TOM1-like protein 2	AT1G21380.1	Target of Myb protein 1 	LOC_Os11g09329.1	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
Ptp.3996.1.S1_s_at	A	A1TS	POPTR_0008s11850	POPTR_0008s11850 (10)	scaffold_8:7591437-7591786(-) (10)	NA	NA	NA	AT1G13360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04010.1	expressed protein	Medtr4g158300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4.1.A1_a_at	A	A1TS	POPTR_0015s07110	POPTR_0015s07110 (11)	scaffold_15:8230795-8231038(-) (11)	NA	Q9LFW3	COBRA-like protein 4	AT5G15630.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os03g30250.1	"COBRA-like protein precursor, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.40.1.S1_at	A	A1TS	POPTR_0005s20270	POPTR_0005s20270 (11)	scaffold_5:19313768-19313908(-) (11)	NA	Q9XI05	Proteasome subunit beta type-3-A	AT1G21720.1	proteasome beta subunit C1 	LOC_Os02g08520.1	"peptidase, T1 family, putative, expressed"	Medtr7g105310.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.400.1.A1_a_at	A	A1TS	POPTR_0010s03980	POPTR_0010s03980 (11)	scaffold_10:4773920-4774060(+) (11)	NA	Q8WTR2	Dual specificity protein phosphatase 19	AT3G23610.2	dual specificity protein phosphatase 1 	LOC_Os01g29469.1	"dual specificity protein phosphatase, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.400.2.A1_at	A	A1TS	POPTR_0010s03980	POPTR_0010s03980 (10)	scaffold_10:4773139-4773812(+) (10)	NA	Q8WTR2	Dual specificity protein phosphatase 19	AT3G23610.2	dual specificity protein phosphatase 1 	LOC_Os01g29469.1	"dual specificity protein phosphatase, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.4001.1.S1_at	A	A1TS	POPTR_0006s04440	POPTR_0006s04440 (11)	scaffold_6:3016155-3016686(-) (11)	NA	NA	NA	AT5G03990.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g58700.1	expressed protein	Medtr7g108030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4002.1.S1_s_at	A	A1TS	POPTR_0002s05540	POPTR_0002s05540 (11)	scaffold_2:3619229-3619572(-) (11)	NA	NA	NA	AT5G19160.1	TRICHOME BIREFRINGENCE-LIKE 11 	LOC_Os11g05080.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr7g133010.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4007.1.A1_at	A	A1TS	POPTR_0014s16010	POPTR_0014s16010 (11)	scaffold_14:12088547-12089344(+) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr8g148310.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4009.1.S1_at	A	A1TS	POPTR_0003s07740	POPTR_0003s07740 (11)	scaffold_3:9248100-9250770(-) (11)	NA	A6BM06	1-aminocyclopropane-1-carboxylate oxidase	AT4G16770.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os10g37899.1	"transposon protein, putative, unclassified, expressed"	Medtr8g105360.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4009.2.A1_s_at	A	A1MS	POPTR_0005s05850	POPTR_0005s05850 (11)	scaffold_11:1187953-1187988(+) (11)//scaffold_11:1254835-1254870(-) (11)//scaffold_14:1081163-1081197(+) (10)//scaffold_5:3818547-3818582(+) (11)//scaffold_7:3878464-3878499(+) (11)//scaffold_750:5780-5815(+) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os08g13420.1	"S-domain receptor-like protein kinase, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.401.1.S1_at	A	A1TS	POPTR_0002s24790	POPTR_0002s24790 (11)	scaffold_2:22053295-22053659(+) (11)	NA	Q9LSG3	Galacturonosyltransferase 8	AT3G25140.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os02g29530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g062010.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.4010.1.S1_at	A	A1TS	POPTR_0018s13990	POPTR_0018s13990 (11)	scaffold_18:14244291-14245784(+) (11)	NA	NA	NA	AT4G29960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51780.1	expressed protein	Medtr2g042660.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4014.1.S1_s_at	A	A1TS	POPTR_0008s06260	POPTR_0008s06260 (11)	scaffold_8:3708954-3709344(-) (11)	NA	P05478	18.5 kDa class I heat shock protein	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067320.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4015.1.S1_at	A	A1TS	POPTR_0011s05400	POPTR_0011s05400 (11)	scaffold_11:5320660-5321257(+) (11)	NA	NA	NA	AT4G21020.1	Late embryogenesis abundant protein (LEA) family protein 	LOC_Os04g52110.1	"late embryogenesis abundant protein, group 3, putative, expressed"	Medtr2g017540.1	"late embryogenesis abundant protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4016.1.A1_at	A	A1TS	POPTR_0001s02370	POPTR_0001s02370 (11)	scaffold_1:1789772-1790906(-) (11)	NA	P19683	"31 kDa ribonucleoprotein, chloroplastic"	AT2G35410.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g50110.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g029900.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4021.1.S1_at	A	A1TS	POPTR_0008s07200	POPTR_0008s07200 (9)	scaffold_8:4377104-4377454(-) (9)	NA	NA	NA	AT5G05500.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os01g07060.1	"POEI43 - Pollen Ole e I allergen and extensin family protein precursor, putative"	Medtr3g094630.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4022.1.S1_s_at	A	A1TS	POPTR_0015s08540	POPTR_0015s08540 (11)	scaffold_15:9830434-9830805(+) (11)	NA	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4024.1.S1_a_at	A	A1TS	POPTR_0010s09140	POPTR_0010s09140 (11)	scaffold_10:9975517-9975560(-) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
Ptp.4024.1.S1_at	A	A1TS	POPTR_0010s09140	POPTR_0010s09140 (11)	scaffold_10:9975398-9976037(-) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
Ptp.4024.2.A1_at	A	A1TS	POPTR_0008s15880	POPTR_0008s15880 (11)	scaffold_8:10602447-10602481(+) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
Ptp.4028.1.S1_at	A	A1TS	POPTR_0001s27100	POPTR_0001s27100 (9)	scaffold_1:26049060-26051355(+) (9)	NA	Q7L1T6	Cytochrome b5 reductase 4	AT5G09680.2	reduced lateral root formation 	LOC_Os07g12830.3	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	NA	NA	NA	GO:0020037|heme binding	NA
Ptp.4031.1.S1_s_at	A	A1TS	POPTR_0004s01770	POPTR_0004s01770 (11)	scaffold_4:1075048-1075331(+) (11)	NA	NA	NA	AT4G21790.1	tobamovirus multiplication 1 	LOC_Os03g36790.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4033.1.S1_at	A	A1MS	POPTR_0006s20210	POPTR_0006s20210 (9)	scaffold_6:19258565-19258974(+) (9)	NA	NA	NA	AT2G24300.2	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4034.1.S1_at	A	A1TS	POPTR_0001s24430	POPTR_0001s24430 (11)	scaffold_1:23706702-23707052(-) (11)	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4034.2.S1_s_at	A	A1TS	POPTR_0009s03410	POPTR_0009s03410 (11)	scaffold_9:4039062-4039512(-) (11)	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	Medtr3g156500.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4034.2.S1_x_at	A	A1TS	POPTR_0009s03410	POPTR_0009s03410 (10)	scaffold_9:4039025-4039510(-) (10)	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	Medtr3g156500.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4036.1.S1_at	A	A1TS	POPTR_0001s06040	POPTR_0001s06040 (11)	scaffold_1:4718225-4719026(-) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os07g46670.3	"early response to dehydration 15, putative, expressed"	Medtr3g026140.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4039.1.S1_at	A	A1TS	POPTR_0002s17080	POPTR_0002s17080 (9)	scaffold_2:12859791-12859954(+) (9)	NA	NA	NA	AT3G61680.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g43140.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.4040.1.S1_s_at	A	A1TS	POPTR_0004s18030	POPTR_0004s18030 (11)	scaffold_4:18039508-18039577(-) (11)	NA	Q42564	"L-ascorbate peroxidase 3, peroxisomal"	AT4G35000.1	ascorbate peroxidase 3 	LOC_Os08g43560.1	"OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9, expressed"	Medtr4g098670.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.4041.2.S1_s_at	A	A1TS	POPTR_0014s15280	POPTR_0014s15280 (11)	scaffold_14:11351723-11351979(-) (11)	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.2	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.1	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr2g006710.1	"Dihydrolipoamide acetyltransferase, long form "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.4043.1.A1_s_at	A	A1TS	POPTR_0006s11860	POPTR_0006s11860 (11)	scaffold_6:9054979-9056762(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.4044.1.S1_s_at	A	A1TS	POPTR_0003s10390	POPTR_0003s10390 (10)	scaffold_3:11388151-11388957(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g089630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4046.1.S1_x_at	A	A1TS	POPTR_0012s03450	POPTR_0012s03450 (11)	scaffold_12:2732649-2733475(+) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g38260.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4047.1.S1_s_at	A	A1TS	POPTR_0001s05810	POPTR_0001s05810 (11)	scaffold_1:4548962-4549382(-) (11)	NA	NA	NA	AT5G13470.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4048.1.S1_s_at	A	A1TS	POPTR_0004s20740	POPTR_0004s20740 (11)	scaffold_4:20171374-20172457(+) (11)	NA	O49884	60S ribosomal protein L30	AT1G36240.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.405.1.A1_s_at	A	A1TS	POPTR_0002s03770	POPTR_0002s03770 (11)	scaffold_2:2344798-2345539(-) (11)	NA	Q681Q7	Uncharacterized protein At1g03900	AT1G03900.1	non-intrinsic ABC protein 4 	LOC_Os10g33630.2	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
Ptp.4050.10.A1_at	A	A1TA	POPTR_0019s09950	POPTR_0019s09950 (11)	scaffold_19:11582404-11582500(+) (11)	POPTR_0019s09920 (7)	Q93ZR6	O-acyltransferase WSD1	AT5G53390.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os05g48260.1	"wax synthase, putative, expressed"	Medtr1g009270.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.11.A1_at	A	A1TA	POPTR_0010s24290	POPTR_0010s24290 (9)	scaffold_10:20578508-20579140(+) (9)	POPTR_0008s02430 (7)	NA	NA	AT1G66240.1	homolog of anti-oxidant 1 	LOC_Os08g10480.1	heavy metal-associated domain containing protein	Medtr1g117110.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.4050.13.A1_x_at	A	A1MA	POPTR_0001s41080	POPTR_0001s41080 (9)	scaffold_1:40733721-40734046(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.17.A1_at	A	A1TA	POPTR_0001s41080	POPTR_0001s41080 (11)	scaffold_1:40733147-40733197(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.2.S1_x_at	A	A1TS	POPTR_0011s11960	POPTR_0011s11960 (10)	scaffold_11:14761222-14761559(+) (10)	NA	Q96386	Metallothionein-like protein type 3	AT3G15353.1	metallothionein 3 	LOC_Os05g11320.1	"metallothionein-like protein 3B, putative, expressed"	Medtr8g070820.1	"Plant metallothionein, family 15 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.3.A1_at	A	A3TA	POPTR_0001s05330	POPTR_0328s00200 (11)//POPTR_0001s05330 (11)//POPTR_0017s07350 (11)	scaffold_1:4110574-4110683(+) (11)//scaffold_17:5708752-5708861(+) (11)//scaffold_328:6367-6476(-) (11)//scaffold_328:19167-19276(-) (11)	POPTR_0328s00210 (7)	Q8GSM2	"Lipoxygenase 2.3, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.4050.4.A1_at	A	A1TA	POPTR_0009s12710	POPTR_0009s12710 (11)	scaffold_9:10320918-10321007(-) (11)	POPTR_0004s16920 (6)	Q944G9	"Probable fructose-bisphosphate aldolase 2, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.4050.9.A1_at	A	A1TA	POPTR_0001s40250	POPTR_0001s40250 (11)	scaffold_1:39619261-39619506(-) (11)	POPTR_0011s11190 (8)	Q02909	"Phosphoenolpyruvate carboxylase, housekeeping isozyme"	AT3G14940.1	phosphoenolpyruvate carboxylase 3 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
Ptp.4051.1.S1_at	A	A1TS	POPTR_0010s16420	POPTR_0010s16420 (11)	scaffold_10:15394709-15394937(-) (11)	NA	Q8RU27	"Alpha-1,4-glucan-protein synthase [UDP-forming] 2"	AT3G08900.1	reversibly glycosylated polypeptide 3 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
Ptp.4053.1.A1_at	A	A1TS	POPTR_0015s06800	POPTR_0015s06800 (10)	scaffold_15:7844322-7845022(+) (10)	NA	P27694	Replication protein A 70 kDa DNA-binding subunit	AT5G08020.1	RPA70-kDa subunit B 	LOC_Os03g11540.1	"RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.4054.1.S1_a_at	A	A1TS	POPTR_0015s14380	POPTR_0015s14380 (11)	scaffold_15:14003598-14003774(+) (11)	NA	Q42971	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.4054.1.S1_s_at	A	A1TS	POPTR_0015s14380	POPTR_0015s14380 (11)	scaffold_15:14004148-14004721(+) (11)	NA	Q42971	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.4055.1.S1_a_at	A	A1TS	POPTR_0009s16460	POPTR_0009s16460 (11)	scaffold_9:12492611-12492716(-) (11)	NA	Q9ZUX4	"Uncharacterized protein At2g27730, mitochondrial"	AT2G27730.1	copper ion binding 	LOC_Os09g39550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4058.1.A1_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (11)	scaffold_2:5545819-5545855(+) (11)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4058.1.A1_s_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (11)	scaffold_2:5545992-5546328(+) (11)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4058.2.S1_at	A	A1TS	POPTR_0016s13160	POPTR_0016s13160 (9)	scaffold_16:12414242-12414623(-) (9)	NA	O13864	Importin subunit beta-1	AT3G08947.1	ARM repeat superfamily protein 	LOC_Os05g28510.4	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
Ptp.4058.3.S1_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (10)	scaffold_2:5544281-5544771(+) (10)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4059.1.S1_at	A	A1TS	POPTR_0018s06900	POPTR_0018s06900 (9)	scaffold_18:6988898-6989630(-) (9)	NA	O23969	Pollen-specific protein SF21	AT5G56750.1	N-MYC downregulated-like 1 	LOC_Os02g13150.1	"pollen-specific protein SF21, putative, expressed"	Medtr4g160760.1	Ndr 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4060.1.S1_s_at	A	A1TS	POPTR_0004s06630	POPTR_0004s06630 (11)	scaffold_4:5321054-5321431(-) (11)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr6g070510.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.4061.1.S1_at	A	A1TS	POPTR_0007s00470	POPTR_0007s00470 (11)	scaffold_7:178959-179285(-) (11)	NA	Q8LAC4	Probable uridine nucleosidase 2	AT1G05620.1	uridine-ribohydrolase  2 	LOC_Os03g31170.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr1g047060.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4062.1.A1_at	A	A1TS	POPTR_0017s07630	POPTR_0017s07630 (11)	scaffold_17:5936777-5936844(-) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g37456.2	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr4g120970.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4063.1.S1_at	A	A1TS	POPTR_0016s01720	POPTR_0016s01720 (11)	scaffold_16:778968-779054(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g52250.1	"LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4063.2.S1_a_at	A	A1TS	POPTR_0016s01720	POPTR_0016s01720 (11)	scaffold_16:778665-778750(-) (11)//scaffold_16:778722-778807(-) (11)//scaffold_16:778779-778864(-) (11)//scaffold_16:778836-778921(-) (9)	NA	P14009	14 kDa proline-rich protein DC2.15	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g52250.1	"LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4064.2.S1_at	A	A1MS	POPTR_0008s20590	POPTR_0008s20590 (10)	scaffold_8:14349149-14349531(-) (10)	NA	Q9ZT66	"Endo-1,3;1,4-beta-D-glucanase"	AT3G23600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33100.1	"endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed"	Medtr2g026480.1	Dienelactone hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4066.1.S1_at	A	A1TS	POPTR_0001s16640	POPTR_0001s16640 (11)	scaffold_1:13418782-13418891(-) (11)	NA	Q9LMA8	Protein TIFY 10A	AT1G19180.1	jasmonate-zim-domain protein 1 	LOC_Os03g28940.1	"ZIM domain containing protein, putative, expressed"	Medtr2g049880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4067.1.S1_at	A	A1TS	POPTR_0019s05360	POPTR_0019s05360 (9)	scaffold_19:5709897-5710335(+) (9)	NA	NA	NA	AT1G54400.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr7g102860.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4068.1.A1_a_at	A	A2TS	POPTR_0008s14130	POPTR_0010s11010 (11)//POPTR_0008s14130 (11)	scaffold_10:11412943-11412988(-) (11)//scaffold_8:9320517-9320562(+) (11)	NA	Q54V61	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	AT2G02050.1	"NADH-ubiquinone oxidoreductase B18 subunit, putative "	LOC_Os03g03770.1	expressed protein	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity	GO:0005739|mitochondrion
Ptp.4068.2.S1_a_at	A	A1TS	POPTR_0010s11000	POPTR_0010s11000 (11)	scaffold_10:11410165-11410333(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4069.1.A1_at	A	A1TS	POPTR_0019s12360	POPTR_0019s12360 (9)	scaffold_19:13401364-13401788(-) (9)	NA	P27054	Endochitinase PR4	AT3G54420.1	homolog of carrot EP3-3 chitinase 	LOC_Os04g41680.1	"CHIT3 - Chitinase family protein precursor, expressed"	Medtr2g120640.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
Ptp.407.1.A1_at	A	A1TS	POPTR_0009s13560	POPTR_0009s13560 (11)	scaffold_9:10763447-10764788(+) (11)	NA	P55034	26S proteasome non-ATPase regulatory subunit 4	AT4G38630.1	regulatory particle non-ATPase 10 	LOC_Os03g13970.2	"26S proteasome non-ATPase regulatory subunit 4, putative, expressed"	Medtr5g022350.1	"von Willebrand factor, type A; Ubiquitin interacting motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4070.1.S1_at	A	A1TS	POPTR_0015s11320	POPTR_0015s11320 (11)	scaffold_15:11919328-11919569(+) (11)	POPTR_0012s10480 (6)	Q42522	"Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic"	AT3G48730.1	"glutamate-1-semialdehyde 2,1-aminomutase 2 "	LOC_Os08g41990.1	"aminotransferase, putative, expressed"	Medtr3g163620.1	"Glutamate-1-semialdehyde-2,1-aminomutase; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.4071.1.S1_at	A	A1TS	POPTR_0018s10530	POPTR_0018s10530 (11)	scaffold_18:11449575-11449924(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4071.2.S1_s_at	A	A1TS	POPTR_0006s18800	POPTR_0006s18800 (11)	scaffold_18:11450002-11453495(-) (11)//scaffold_6:17478578-17482103(-) (11)	POPTR_0018s10540 (7)	A1XQR9	Small nuclear ribonucleoprotein E	AT4G30330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os02g03440.1	"LSM domain containing protein, expressed"	Medtr2g127110.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4073.1.S1_s_at	A	A1TS	POPTR_0014s12170	POPTR_0014s12170 (11)	scaffold_14:8997376-8997631(-) (11)	NA	O81416	Endoglucanase 17	AT4G02290.1	glycosyl hydrolase 9B13 	LOC_Os01g21070.1	"endoglucanase, putative, expressed"	Medtr1g108080.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4074.1.S1_at	A	A1MS	POPTR_0009s00940	POPTR_0009s00940 (11)	scaffold_9:1079706-1079824(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4075.1.S1_at	A	A1TS	POPTR_0009s09990	POPTR_0009s09990 (11)	scaffold_9:8704724-8704922(-) (11)	NA	NA	NA	AT2G01640.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os12g14110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4077.1.S1_at	A	A1TS	POPTR_0003s19390	POPTR_0003s19390 (11)	scaffold_3:18128211-18128749(-) (11)	NA	Q09704	Exosome complex component rrp4	AT1G03360.1	ribosomal RNA processing 4 	LOC_Os04g43922.1	"exosome complex exonuclease rrp4, putative, expressed"	Medtr8g138160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4078.1.S1_s_at	A	A1TS	POPTR_0002s21750	POPTR_0002s21750 (11)	scaffold_2:18318990-18319034(+) (11)	NA	Q9MB94	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.408.1.A1_at	A	A1TS	POPTR_0009s14840	POPTR_0009s14840 (10)	scaffold_9:11553660-11553858(+) (10)	NA	NA	NA	AT4G04190.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g33510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4080.1.A1_s_at	A	A2TS	POPTR_0006s24490	POPTR_0006s24490 (11)//POPTR_0012s11120 (11)	scaffold_12:11698749-11699371(+) (11)//scaffold_6:23082315-23082926(+) (11)	NA	Q54Y03	Probable adenylate kinase isoenzyme 6	AT5G60340.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g22950.1	"adenylate kinase isoenzyme 6, putative, expressed"	Medtr5g094960.2	"Probable adenylate kinase isoenzyme 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4082.1.S1_at	A	A1TS	POPTR_0009s13950	POPTR_0009s13950 (9)	scaffold_9:11030320-11031414(+) (9)	NA	Q5PNS9	Probable protein phosphatase 2C 64	AT4G38520.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4083.1.A1_at	A	A1TS	POPTR_0002s08530	POPTR_0002s08530 (11)	scaffold_2:5965368-5965457(+) (11)	NA	Q93ZH0	LysM domain-containing GPI-anchored protein 1	AT1G21880.2	lysm domain GPI-anchored protein 1 precursor 	LOC_Os02g53000.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	Medtr3g097500.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidoglycan-binding LysM "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.4083.1.A1_s_at	A	A1TS	POPTR_0002s08530	POPTR_0002s08530 (11)	scaffold_2:5964408-5965428(+) (11)	NA	Q93ZH0	LysM domain-containing GPI-anchored protein 1	AT1G21880.2	lysm domain GPI-anchored protein 1 precursor 	LOC_Os02g53000.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	Medtr3g097500.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidoglycan-binding LysM "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.4084.1.S1_at	A	A1TS	POPTR_0014s18890	POPTR_0014s18890 (11)	scaffold_14:16431184-16431257(+) (11)	NA	NA	NA	AT5G48655.3	RING/U-box superfamily protein 	LOC_Os01g69040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4087.1.S1_at	A	A1TS	POPTR_0008s21110	POPTR_0008s21110 (11)	scaffold_8:15243028-15243844(-) (11)	NA	Q6MEE7	tRNA pseudouridine synthase A 1	AT3G06950.1	Pseudouridine synthase family protein 	LOC_Os05g19954.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr8g133980.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.4091.1.S1_at	A	A1TS	POPTR_0014s08490	POPTR_0014s08490 (9)	scaffold_14:6303533-6304361(-) (9)	POPTR_0002s16420 (7)	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
Ptp.4093.1.S1_at	A	A1TS	POPTR_0019s06040	POPTR_0019s06040 (9)	scaffold_19:6511314-6511782(+) (9)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.4094.1.S1_at	A	A1MS	POPTR_0003s16440	POPTR_0003s16440 (10)	scaffold_3:16036674-16037261(+) (10)	NA	Q9C7E8	Zinc finger protein CONSTANS-LIKE 15	AT2G33500.2	B-box type zinc finger protein with CCT domain 	LOC_Os02g49230.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g096570.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.4095.1.S1_at	A	A2TS	POPTR_0017s04390	POPTR_0017s04390 (10)//POPTR_0017s00580 (9)	scaffold_17:319537-319970(+) (10)//scaffold_17:3390180-3390613(-) (10)	NA	Q9T076	Early nodulin-like protein 2	AT4G28365.1	early nodulin-like protein 3 	LOC_Os01g54430.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g108120.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.4096.1.S1_at	A	A1TS	POPTR_0012s01060	POPTR_0012s01060 (9)	scaffold_12:747494-749214(+) (9)	NA	O22224	Uncharacterized protein At2g41620	AT2G41620.1	Nucleoporin interacting component (Nup93/Nic96-like) family protein 	LOC_Os03g22690.1	"nucleoporin interacting component, putative, expressed"	Medtr2g125990.1	Nucleoporin interacting component 	GO:0006810|transport	NA	GO:0005643|nuclear pore
Ptp.4097.2.A1_a_at	A	A1MS	POPTR_0009s13940	POPTR_0009s13940 (11)	scaffold_9:11011118-11011215(-) (11)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4097.2.A1_at	A	A1MS	POPTR_0009s13940	POPTR_0009s13940 (9)	scaffold_9:11011165-11011324(-) (9)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4099.1.S1_at	A	A1TS	POPTR_0001s10340	POPTR_0001s10340 (10)	scaffold_1:8035723-8035986(+) (10)	NA	Q9BZJ0	Crooked neck-like protein 1	AT5G41770.1	"crooked neck protein, putative / cell cycle protein, putative "	LOC_Os05g22260.1	"crooked neck, putative, expressed"	Medtr5g009540.1	"RNA-processing protein, HAT helix "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	GO:0005622|intracellular
Ptp.41.1.A1_at	A	A1TS	POPTR_0001s10090	POPTR_0001s10090 (11)	scaffold_1:7815907-7816202(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.410.1.A1_s_at	A	A1TS	POPTR_0013s12380	POPTR_0013s12380 (11)	scaffold_13:13014436-13014665(-) (11)	NA	Q9M2K6	"Glucan endo-1,3-beta-glucosidase-like protein 1"	AT3G58100.1	plasmodesmata callose-binding protein 5 	LOC_Os06g34660.1	"X8 domain containing protein, expressed"	AC233675_22.1	X8 AC233675.1 104814-106418 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4100.1.A1_a_at	A	A1TS	POPTR_0002s07050	POPTR_0002s07050 (11)	scaffold_2:4767521-4767776(-) (11)	NA	P54772	Histidine decarboxylase	AT1G43710.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os02g33710.1	"decarboxylase, putative, expressed"	Medtr2g008250.1	Pyridoxal-dependent decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4101.1.S1_s_at	A	A1TS	POPTR_0878s00210	POPTR_0878s00210 (11)	scaffold_878:4906-4952(+) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4102.2.A1_a_at	A	A1TS	POPTR_0001s00440	POPTR_0001s00440 (11)	scaffold_1:335892-336673(-) (11)	NA	P22988	L-lactate dehydrogenase A	AT4G17260.1	Lactate/malate dehydrogenase family protein 	LOC_Os02g01510.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g012480.1	L-lactate/malate dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4105.1.A1_at	A	A1TS	POPTR_0015s03620	POPTR_0015s03620 (10)	scaffold_15:3402857-3403422(-) (10)	NA	P73689	Protease 4	AT1G73990.1	signal peptide peptidase 	LOC_Os02g49570.1	"OsProtIV1 - Putative Protease IV homologue; Domain 2 is a SPH, expressed"	Medtr2g074180.1	"Peptidase S49, SppA "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
Ptp.4106.3.A1_a_at	A	A1TS	POPTR_0002s11510	POPTR_0002s11510 (11)	scaffold_2:8559877-8560084(-) (11)	NA	NA	NA	AT3G12210.2	DNA binding 	LOC_Os03g51880.1	"GA15368-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4106.3.A1_at	A	A1MS	POPTR_0002s11510	POPTR_0002s11510 (10)	scaffold_2:8559429-8559945(-) (10)	NA	NA	NA	AT3G12210.2	DNA binding 	LOC_Os03g51880.1	"GA15368-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4107.2.S1_a_at	A	A2TS	POPTR_0007s01520	POPTR_0007s01520 (9)//POPTR_0596s00210 (9)	scaffold_596:9629-9873(+) (9)//scaffold_7:847242-847477(-) (9)	NA	Q9LJP1	GDSL esterase/lipase 4	AT3G14225.1	GDSL-motif lipase 4 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.411.1.A1_at	A	A1TS	POPTR_0005s04470	POPTR_0005s04470 (9)	scaffold_5:2989586-2990028(-) (9)	NA	Q28I38	DnaJ homolog subfamily B member 14	AT5G27240.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g27740.3	"dnaJ domain containing protein, expressed"	Medtr7g139960.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.4110.1.S1_at	A	A1TS	POPTR_0009s13460	POPTR_0009s13460 (9)	scaffold_9:10701451-10701483(+) (9)	NA	Q38896	Glycine-rich protein 2b	AT2G17870.1	cold shock domain protein 3 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.4110.1.S1_s_at	A	A1TS	POPTR_0009s13460	POPTR_0009s13460 (11)	scaffold_9:10701545-10701882(+) (11)	NA	Q38896	Glycine-rich protein 2b	AT2G17870.1	cold shock domain protein 3 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.4110.2.S1_s_at	A	A1TS	POPTR_0002s22410	POPTR_0002s22410 (11)	scaffold_2:19108751-19109511(-) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os10g31950.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4111.3.S1_s_at	A	A1TS	POPTR_0013s01640	POPTR_0013s01640 (11)	scaffold_13:930147-930520(-) (11)	NA	NA	NA	AT1G56220.3	Dormancy/auxin associated family protein 	LOC_Os03g22270.3	"auxin-repressed protein, putative, expressed"	Medtr1g099940.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4112.2.S1_at	A	A1TS	POPTR_0001s15840	POPTR_0001s15840 (11)	scaffold_1:12675700-12676787(+) (11)	POPTR_0003s07420 (7)	Q39079	Chaperone protein dnaJ 13	AT2G35720.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g36370.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g012600.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.4113.1.S1_at	A	A1TS	POPTR_0006s12280	POPTR_0006s12280 (11)	scaffold_6:9433625-9435570(+) (11)	NA	P38094	Protein fluG	AT3G53180.1	glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases 	LOC_Os10g31820.1	"fluG, putative, expressed"	Medtr3g043930.1	Glutamine synthetase type I 	GO:0006807|nitrogen compound metabolic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.4115.1.S1_at	A	A1TS	POPTR_0001s46570	POPTR_0001s46570 (11)	scaffold_1:46939875-46940168(+) (11)	NA	Q94C59	Patellin-4	AT1G30690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os06g45990.2	"patellin-5, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4116.1.S1_at	A	A1TS	POPTR_0004s21020	POPTR_0004s21020 (10)	scaffold_4:20336071-20336338(+) (10)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4116.1.S1_s_at	A	A1TS	POPTR_0004s21020	POPTR_0004s21020 (11)	scaffold_4:20336152-20336422(+) (11)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4118.1.S1_at	A	A1TS	POPTR_0018s10960	POPTR_0018s10960 (11)	scaffold_18:11787342-11788468(-) (11)	NA	Q75K12	5'-nucleotidase domain-containing protein DDB_G0275467	AT2G23890.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os09g25640.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr5g089940.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4121.1.S1_s_at	A	A1TS	POPTR_0002s25620	POPTR_0002s25620 (11)	scaffold_2:22713694-22714009(+) (11)	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4122.1.A1_at	A	A1TS	POPTR_0019s02320	POPTR_0019s02320 (11)	scaffold_19:2150341-2150851(-) (11)	NA	NA	NA	AT5G28640.1	SSXT family protein 	LOC_Os03g52320.1	"GRF-interacting factor 1, putative, expressed"	Medtr1g094100.1	SSXT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4123.1.S1_at	A	A1TS	POPTR_0008s04210	POPTR_0008s04210 (10)	scaffold_8:2365491-2365586(+) (10)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.4124.1.S1_at	A	A1TS	POPTR_0001s06740	POPTR_0001s06740 (11)	scaffold_1:5159278-5160513(-) (11)	NA	NA	NA	AT5G06970.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4125.1.S1_s_at	A	A1TS	POPTR_0001s13290	POPTR_0001s13290 (9)	scaffold_1:10384311-10384428(-) (9)	NA	NA	NA	AT2G33510.1	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). 	LOC_Os02g31140.1	"major ampullate spidroin 2-2, putative, expressed"	Medtr7g005170.1	WW/Rsp5/WWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4127.1.S1_s_at	A	A1TS	POPTR_0007s07600	POPTR_0007s07600 (11)	scaffold_7:5968337-5968406(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT3G19910.1	RING/U-box superfamily protein 	LOC_Os08g43480.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr1g143530.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.413.1.S1_at	A	A1TS	POPTR_0001s19530	POPTR_0001s19530 (11)	scaffold_1:17239826-17240843(-) (11)	NA	O96552	Charged multivesicular body protein 1	AT1G17730.1	vacuolar protein sorting 46.1 	LOC_Os06g43590.3	"SNF7 domain containing protein, putative, expressed"	Medtr2g121700.1	Snf7 	GO:0015031|protein transport	NA	NA
Ptp.4130.1.S1_s_at	A	A1TS	POPTR_0006s07310	POPTR_0006s07310 (11)	scaffold_6:5251213-5251535(-) (11)	NA	NA	NA	AT5G57123.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g44980.1	conserved hypothetical protein	Medtr2g042970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4132.1.S1_at	A	A1TS	POPTR_0018s12030	POPTR_0018s12030 (11)	scaffold_18:12647579-12648110(+) (11)	NA	P51425	60S ribosomal protein L39	AT4G31985.1	Ribosomal protein L39 family protein 	LOC_Os02g55370.1	"60S ribosomal protein L39, putative, expressed"	Medtr3g137960.1	Ribosomal protein L39e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4133.1.S1_at	A	A1TS	POPTR_0008s10350	POPTR_0008s10350 (11)	scaffold_8:6486728-6488676(+) (11)	NA	Q499W2	DNA replication complex GINS protein SLD5	AT5G49010.1	DNA replication protein-related 	LOC_Os05g05150.1	"SLD5 - Putative GINS complex subunit, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4138.1.S1_at	A	A1TS	POPTR_0004s18640	POPTR_0004s18640 (11)	scaffold_4:18458028-18458265(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT4G38430.1	rho guanyl-nucleotide exchange factor 1 	LOC_Os09g37270.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
Ptp.4139.1.S1_at	A	A1TS	POPTR_0012s13350	POPTR_0012s13350 (11)	scaffold_12:13539482-13539969(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT5G62070.1	IQ-domain 23 	LOC_Os04g48160.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g129280.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.414.1.S1_at	A	A1TS	POPTR_0017s11370	POPTR_0017s11370 (11)	scaffold_17:11133580-11133864(+) (11)//scaffold_891:1807-2010(+) (9)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4142.1.S1_s_at	A	A1TS	POPTR_0017s02990	POPTR_0017s02990 (11)	scaffold_17:2165142-2165332(+) (11)	NA	Q38851	Transcription repressor MYB6	AT4G09460.1	myb domain protein 6 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4143.1.S1_at	A	A1TS	POPTR_0016s02550	POPTR_0016s02550 (11)	scaffold_16:1253956-1254002(-) (11)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT5G05080.2	ubiquitin-conjugating enzyme 22 	LOC_Os06g45000.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g104500.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4143.1.S1_s_at	A	A1TS	POPTR_0016s02550	POPTR_0016s02550 (11)	scaffold_16:1253653-1254217(-) (11)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT5G05080.2	ubiquitin-conjugating enzyme 22 	LOC_Os06g45000.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g104500.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4145.2.A1_a_at	A	A1TS	POPTR_0008s20440	POPTR_0008s20440 (11)	scaffold_8:14191200-14192050(-) (11)	NA	Q944H2	"Protein ABCI12, chloroplastic"	AT3G21580.1	cobalt ion transmembrane transporters 	LOC_Os05g33230.1	"cobalt ion transporter, putative, expressed"	Medtr2g026300.1	Cobalt transport protein 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006824|cobalt ion transport||GO:0044283|small molecule biosynthetic process	GO:0015087|cobalt ion transmembrane transporter activity	NA
Ptp.4146.1.S1_s_at	A	A1TS	POPTR_0007s05490	POPTR_0007s05490 (11)	scaffold_7:3577242-3577532(+) (11)	NA	Q9XEE2	Annexin D2	AT5G65020.1	annexin 2 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
Ptp.4148.1.A1_at	A	A1TS	POPTR_0008s17810	POPTR_0008s17810 (11)	scaffold_8:11957850-11958187(+) (11)	NA	Q9CAG3	"Lipoxygenase 6, choloroplastic"	AT1G67560.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g08220.1	"lipoxygenase protein, putative, expressed"	AC233656_19.3	Lipoxygenase AC233656.1 68212-72891 E EGN_Mt090430 200	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.415.1.A1_at	A	A1TS	POPTR_0005s23920	POPTR_0005s23920 (9)	scaffold_5:22616218-22616738(-) (9)	NA	P42390	"Indole-3-glycerol phosphate lyase, chloroplastic"	AT3G54640.1	tryptophan synthase alpha chain 	LOC_Os07g08430.1	"indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006568|tryptophan metabolic process	GO:0004834|tryptophan synthase activity	NA
Ptp.4150.1.A1_at	A	A1TS	POPTR_0019s08280	POPTR_0019s08280 (11)	scaffold_19:9761962-9762327(+) (11)	NA	Q6P7K5	UPF0510 protein INM02	AT1G65270.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os11g16320.1	expressed protein	Medtr7g089960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4151.1.A1_s_at	A	A2TS	POPTR_0017s07350	POPTR_0017s07350 (11)//POPTR_0328s00200 (9)	scaffold_17:5703430-5703924(-) (11)//scaffold_328:11358-11846(+) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os08g39850.1	"lipoxygenase, chloroplast precursor, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.4154.1.S1_s_at	A	A1TS	POPTR_0003s06460	POPTR_0003s06460 (11)	scaffold_3:7941557-7942028(-) (11)	NA	P24465	Cytochrome P450 71A1	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4156.1.S1_a_at	A	A1TS	POPTR_0019s09700	POPTR_0019s09700 (11)	scaffold_19:11318784-11319194(+) (11)	NA	Q15427	Splicing factor 3B subunit 4	AT4G10110.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os05g35274.2	"RNA recognition motif containing protein, putative, expressed"	Medtr1g122170.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4157.1.S1_s_at	A	A1TS	POPTR_0010s08110	POPTR_0010s08110 (11)	scaffold_10:9041834-9042232(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT3G23340.1	casein kinase I-like 10 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4160.1.S1_at	A	A1TS	POPTR_0016s11810	POPTR_0016s11810 (9)	scaffold_16:10980368-10980891(+) (9)	NA	O55236	mRNA-capping enzyme	AT3G09100.2	mRNA capping enzyme family protein 	LOC_Os12g09120.1	"mRNA-capping enzyme, putative, expressed"	Medtr4g012250.1	"Dual specificity protein phosphatase; mRNA capping enzyme; Nucleic acid-binding, OB-fold, subgroup "	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0004484|mRNA guanylyltransferase activity||GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.4164.1.S1_s_at	A	A1TS	POPTR_0002s24770	POPTR_0002s24770 (9)	scaffold_2:22035523-22038260(+) (11)	NA	Q09020	Wound-induced basic protein	AT3G07230.1	wound-responsive protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4167.1.S1_at	A	A1TS	POPTR_0005s26650	POPTR_0005s26650 (9)	scaffold_5:24571344-24572290(+) (9)	NA	Q9XHM1	Eukaryotic translation initiation factor 3 subunit C	AT3G56150.2	eukaryotic translation initiation factor 3C 	LOC_Os07g03230.2	"eukaryotic translation initiation factor 3 subunit C, putative, expressed"	Medtr7g143620.1	"Proteasome component region PCI; Eukaryotic translation initiation factor 3 subunit 8, C-terminal; Eukaryotic translation initiation factor 3 subunit 8, N-terminal; Winged helix repressor DNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	GO:0005852|eukaryotic translation initiation factor 3 complex
Ptp.4168.1.S1_at	A	A1MA	POPTR_0014s06660	POPTR_0014s06660 (11)	scaffold_14:5062244-5062300(+) (11)	NA	Q9LPC6	Armadillo repeat-containing kinesin-like protein 2	AT1G01950.1	armadillo repeat kinesin 2 	LOC_Os06g04560.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.417.1.S1_s_at	A	A1TS	POPTR_0012s04090	POPTR_0012s04090 (11)	scaffold_12:3311454-3311729(+) (11)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.4170.1.S1_at	A	A1TS	POPTR_0011s09870	POPTR_0011s09870 (10)	scaffold_11:12320246-12320925(-) (10)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G06230.3	global transcription factor group E4 	LOC_Os01g11580.1	"bromodomain containing protein, expressed"	Medtr4g109460.1	Bromodomain; Protein of unknown function GLTT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4171.1.A1_at	A	A1TS	POPTR_0011s09790	POPTR_0011s09790 (11)	scaffold_11:12241971-12243986(+) (11)	NA	NA	NA	AT3G14450.1	CTC-interacting domain 9 	LOC_Os01g11120.1	"CID11, putative, expressed"	Medtr3g122880.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4172.1.A1_at	A	A1TS	POPTR_0003s19820	POPTR_0003s19820 (11)	scaffold_3:18441880-18442065(-) (11)	NA	Q8S3N1	E3 ubiquitin-protein ligase SINAT5	AT3G61790.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os07g46560.1	"seven in absentia protein family domain containing protein, expressed"	Medtr3g020180.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
Ptp.4175.1.S1_s_at	A	A1TS	POPTR_0011s11410	POPTR_0011s11410 (11)	scaffold_11:14180861-14181299(+) (11)	NA	Q9FPS2	Ubiquitin carboxyl-terminal hydrolase 25	AT3G14400.1	ubiquitin-specific protease 25 	LOC_Os05g43480.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g145470.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.4176.1.S1_at	A	A1TS	POPTR_0010s05300	POPTR_0010s05300 (11)	scaffold_10:6768096-6768294(+) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4179.1.S1_s_at	A	A1TS	POPTR_0001s16440	POPTR_0001s16440 (11)	scaffold_1:13235789-13235963(+) (11)	NA	P53569	CCAAT/enhancer-binding protein zeta	AT1G72440.1	CCAAT-binding factor 	LOC_Os09g02810.1	"CCAAT/enhancer-binding protein, putative, expressed"	Medtr8g138880.1	CBF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4180.1.A1_a_at	A	A1TS	POPTR_0008s00500	POPTR_0008s00500 (11)	scaffold_8:207629-207885(-) (11)	NA	NA	NA	AT3G20260.1	Protein of unknown function (DUF1666) 	LOC_Os08g40820.2	expressed protein	Medtr4g158140.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4182.1.S1_at	A	A1TS	POPTR_0001s04590	POPTR_0001s04590 (11)	scaffold_1:3577325-3577854(-) (11)	NA	NA	NA	AT2G44290.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g07100.1	"LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g133890.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4184.1.S1_s_at	A	A1TS	POPTR_0006s00280	POPTR_0006s00280 (11)	scaffold_6:60651-61165(+) (11)	NA	P54567	Uncharacterized protein yqkD	AT4G17150.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g40730.1	"protein with a conserved N-terminal region, putative, expressed"	Medtr2g033450.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4185.1.S1_at	A	A1TS	POPTR_0006s29080	POPTR_0006s29080 (11)	scaffold_6:26574059-26574513(+) (11)	NA	Q9S9K9	Transcription factor MYB3	AT1G22640.1	myb domain protein 3 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4186.1.A1_s_at	A	A1TS	POPTR_0005s25240	POPTR_0005s25240 (11)	scaffold_5:23542937-23543583(-) (11)	NA	Q9SFZ3	Transcription factor bHLH110	AT1G27660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01600.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4187.1.S1_at	A	A1TS	POPTR_0009s15010	POPTR_0009s15010 (11)	scaffold_9:11648781-11648824(-) (11)	NA	P27880	18.2 kDa class I heat shock protein	AT2G29500.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067320.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4188.1.S1_at	A	A1TS	POPTR_0014s09400	POPTR_0014s09400 (11)	scaffold_14:6971724-6973318(-) (11)	NA	Q9M364	Histone-lysine N-methyltransferase ATX3	AT3G61740.2	SET domain protein 14 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4188.1.S1_s_at	A	A2TS	POPTR_0002s17180	POPTR_0002s17180 (11)//POPTR_0014s09400 (11)	scaffold_14:6971894-6973622(-) (11)//scaffold_2:12946852-12948748(-) (11)	NA	Q9M364	Histone-lysine N-methyltransferase ATX3	AT3G61740.2	SET domain protein 14 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4190.1.S1_at	A	A1TS	POPTR_0001s14040	POPTR_0001s14040 (11)	scaffold_1:11052813-11052952(+) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.4190.1.S1_x_at	A	A1TS	POPTR_0001s14040	POPTR_0001s14040 (11)	scaffold_1:11052083-11052952(+) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.4191.1.A1_at	A	A1TS	POPTR_0003s04320	POPTR_0003s04320 (10)	scaffold_3:5027907-5028648(-) (10)	NA	Q5HWH7	5'-nucleotidase surE	AT1G72880.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os01g51280.1	"5-nucleotidase surE, putative, expressed"	Medtr2g120880.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
Ptp.4193.1.S1_at	A	A1TS	POPTR_0003s09720	POPTR_0003s09720 (11)	scaffold_3:10971617-10971949(-) (11)	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4193.2.S1_s_at	A	A2TS	POPTR_0001s01760	POPTR_0003s09720 (11)//POPTR_0001s01760 (11)	scaffold_1:1282867-1283027(+) (11)//scaffold_3:10973419-10973579(-) (11)	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4194.1.S1_x_at	A	A1TS	POPTR_0005s14680	POPTR_0005s14680 (9)	scaffold_5:11681085-11681253(+) (9)	NA	Q1S9I9	Probable histone H2B.1	AT3G45980.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.4195.1.S1_at	A	A1TS	POPTR_0006s11860	POPTR_0006s11860 (11)	scaffold_18:1498489-1498891(+) (9)//scaffold_6:9050295-9051232(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.4197.1.S1_s_at	A	A1TS	POPTR_0015s07550	POPTR_0015s07550 (11)	scaffold_15:8839388-8839687(+) (11)	NA	Q40255	Probable aldehyde dehydrogenase	AT5G62530.1	aldehyde dehydrogenase 12A1 	LOC_Os05g45960.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g112760.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4199.1.S1_s_at	A	A1TS	POPTR_0016s14520	POPTR_0016s14520 (10)	scaffold_16:13724471-13724969(-) (10)	NA	NA	NA	AT5G01910.1	unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4200.1.S1_s_at	A	A1TS	POPTR_0007s04160	POPTR_0007s04160 (11)	scaffold_7:2508287-2508969(+) (11)	NA	P49107	"Photosystem I reaction center subunit N, chloroplastic"	AT5G64040.1	"photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) "	LOC_Os12g08770.1	"photosystem I reaction center subunit N, chloroplast precursor, putative, expressed"	Medtr3g144130.1	Photosystem I reaction centre subunit N 	GO:0015979|photosynthesis	GO:0005515|protein binding	GO:0042651|thylakoid membrane||GO:0009522|photosystem I
Ptp.4201.1.S1_s_at	A	A1TS	POPTR_0010s16860	POPTR_0010s16860 (11)	scaffold_10:15680864-15681342(-) (11)	NA	NA	NA	AT2G03440.1	nodulin-related protein 1 	LOC_Os03g11220.1	"keratin, type I cytoskeletal 9, putative, expressed"	Medtr4g115540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4202.1.S1_s_at	A	A1TS	POPTR_0015s12220	POPTR_0015s12220 (11)	scaffold_15:12571834-12573444(+) (11)	NA	Q84WM7	Pectinesterase PPME1	AT1G69940.1	Pectin lyase-like superfamily protein 	LOC_Os12g37660.1	"pectinesterase, putative, expressed"	Medtr8g133070.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
Ptp.4203.1.S1_at	A	A1TS	POPTR_0005s22070	POPTR_0005s22070 (11)	scaffold_5:21075653-21075732(-) (11)	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4203.1.S1_s_at	A	A1TS	POPTR_0005s22070	POPTR_0005s22070 (11)	scaffold_5:21071248-21073615(-) (11)	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4205.1.S1_at	A	A1TS	POPTR_0002s11120	POPTR_0002s11120 (9)	scaffold_2:8143571-8143987(-) (9)	NA	O81635	Kinesin-4	AT2G22610.1	Di-glucose binding protein with Kinesin motor domain 	LOC_Os03g02290.1	"kinesin motor domain containing protein, putative, expressed"	Medtr5g032890.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.4207.1.A1_at	A	A1TS	POPTR_0007s04470	POPTR_0007s04470 (9)	scaffold_7:2764506-2764808(-) (9)	NA	NA	NA	AT5G09270.2	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g64190.1	expressed protein	Medtr1g124960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.421.1.A1_at	A	A1TS	POPTR_0008s10700	POPTR_0008s10700 (11)	scaffold_8:6719597-6721124(+) (11)	NA	P72740	Dihydrolipoyl dehydrogenase	AT3G16950.1	lipoamide dehydrogenase 1 	LOC_Os01g23610.1	"dihydrolipoyl dehydrogenase, putative, expressed"	Medtr8g137840.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
Ptp.4212.1.S1_a_at	A	A1TS	POPTR_0014s16220	POPTR_0014s16220 (11)	scaffold_14:12312632-12314156(+) (11)	NA	Q9SI37	WRKY transcription factor 1	AT2G04880.2	zinc-dependent activator protein-1 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.4213.1.S1_at	A	A1TS	POPTR_0018s14880	POPTR_0018s14880 (9)	scaffold_18:14909621-14910818(+) (9)	NA	NA	NA	AT5G58210.4	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g42550.1	expressed protein	Medtr6g083870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4215.1.S1_at	A	A1TS	POPTR_0008s11340	POPTR_0008s11340 (9)	scaffold_8:7187721-7188228(+) (9)	NA	Q9CA40	Nudix hydrolase 1	AT1G68760.1	nudix hydrolase  1 	NA	NA	Medtr5g071730.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4216.1.S1_at	A	A1TS	POPTR_0002s10790	POPTR_0002s10790 (9)	scaffold_2:7837324-7837385(+) (9)	NA	Q9VTG7	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	AT1G27600.2	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os10g13810.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr3g127830.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
Ptp.4217.2.S1_s_at	A	A1TS	POPTR_0003s20130	POPTR_0003s20130 (11)	scaffold_3:18719460-18719641(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os07g46670.3	"early response to dehydration 15, putative, expressed"	Medtr3g026140.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4218.1.S1_s_at	A	A1TS	POPTR_0010s16060	POPTR_0010s16060 (11)	scaffold_10:15122282-15122384(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4219.1.S1_s_at	A	A1TS	POPTR_0011s04710	POPTR_0011s04710 (11)	scaffold_11:4684394-4684754(-) (11)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4220.2.S1_a_at	A	A1TS	POPTR_0001s09860	POPTR_0001s09860 (11)	scaffold_1:7613849-7614406(-) (11)	NA	Q9CAK8	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic"	AT1G63970.1	isoprenoid F 	LOC_Os02g45660.1	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed"	Medtr5g010080.1	MECDP-synthase 	GO:0016114|terpenoid biosynthetic process	"GO:0008685|""2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"""	NA
Ptp.4221.1.A1_at	A	A1TS	POPTR_0001s45920	POPTR_0001s45920 (11)	scaffold_1:46428896-46428972(+) (11)	NA	Q9SV84	Probable aquaporin NIP5-1	AT4G10380.1	NOD26-like intrinsic protein 5;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4221.1.A1_x_at	A	A1TS	POPTR_0001s45920	POPTR_0001s45920 (11)	scaffold_1:46428898-46429180(+) (11)	NA	Q9SV84	Probable aquaporin NIP5-1	AT4G10380.1	NOD26-like intrinsic protein 5;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4229.1.S1_s_at	A	A1TS	POPTR_0016s13190	POPTR_0016s13190 (11)	scaffold_16:12440167-12440558(+) (11)	NA	NA	NA	AT5G01590.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr4g012040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4230.1.S1_at	A	A1TS	POPTR_0011s03770	POPTR_0011s03770 (10)	scaffold_11:3828450-3828973(-) (10)	NA	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT4G21380.1	receptor kinase 3 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011240.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4232.1.S1_s_at	A	A1TS	POPTR_0016s11980	POPTR_0016s11980 (11)	scaffold_16:11156888-11157019(+) (11)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4233.1.S1_at	A	A1TS	POPTR_0001s27200	POPTR_0001s27200 (9)	scaffold_1:26114746-26115200(+) (10)	NA	NA	NA	AT3G08020.1	PHD finger family protein 	LOC_Os12g34330.1	"protein binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4235.1.S1_at	A	A1TS	POPTR_0015s05090	POPTR_0015s05090 (11)	scaffold_15:5405238-5405874(-) (11)	NA	Q9LD37	"Probable cyclic nucleotide-gated ion channel 20, chloroplastic"	AT3G17700.1	cyclic nucleotide-binding transporter 1 	LOC_Os02g53340.2	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr6g074020.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.4237.1.S1_at	A	A1TS	POPTR_0003s11430	POPTR_0003s11430 (11)	scaffold_3:12236431-12236550(-) (11)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4237.1.S1_s_at	A	A1TS	POPTR_0003s11430	POPTR_0003s11430 (11)	scaffold_3:12236385-12236498(-) (11)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4238.1.S1_s_at	A	A1TS	POPTR_0016s08670	POPTR_0016s08670 (11)	scaffold_16:6470271-6470648(+) (11)	NA	NA	NA	AT3G09670.2	Tudor/PWWP/MBT superfamily protein 	LOC_Os11g19810.2	"PWWP domain containing protein, expressed"	Medtr1g086970.1	PWWP; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4239.1.A1_at	A	A1TS	POPTR_0001s06100	POPTR_0001s06100 (11)	scaffold_1:4739921-4740432(-) (11)	NA	NA	NA	AT3G13650.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	Medtr3g040700.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.424.1.A1_a_at	A	A1TS	POPTR_0009s12720	POPTR_0009s12720 (11)	scaffold_9:10331771-10332631(+) (11)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT4G08350.1	global transcription factor group A2 	LOC_Os02g53230.1	"transcription elongation factor SPT5 homolog 1, putative, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.424.2.A1_s_at	A	A2TS	POPTR_0009s12720	POPTR_0009s12720 (11)//POPTR_0004s16940 (9)	scaffold_4:17318185-17320913(+) (9)//scaffold_9:10329526-10332567(+) (11)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT4G08350.1	global transcription factor group A2 	LOC_Os02g53230.1	"transcription elongation factor SPT5 homolog 1, putative, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4240.1.A1_at	A	A1MS	POPTR_0006s07990	POPTR_0006s07990 (10)	scaffold_6:5846421-5846818(+) (11)	NA	Q605C1	30S ribosomal protein S17	AT1G49400.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os08g27090.1	"ribosomal protein S17, putative, expressed"	Medtr6g005050.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4240.2.A1_a_at	A	A2TS	POPTR_0018s14700	POPTR_0018s14700 (11)//POPTR_0006s07990 (10)	scaffold_18:14817814-14818177(+) (11)//scaffold_6:5845952-5846305(+) (11)	NA	A7HM43	30S ribosomal protein S17	AT1G49400.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os08g27090.1	"ribosomal protein S17, putative, expressed"	Medtr6g005050.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4240.3.A1_at	A	A1TS	POPTR_0018s14700	POPTR_0018s14700 (11)	scaffold_18:14818211-14818829(+) (11)	NA	A7HM43	30S ribosomal protein S17	AT1G49400.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os08g27090.1	"ribosomal protein S17, putative, expressed"	Medtr6g005050.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4243.1.S1_at	A	A1TS	POPTR_0006s26820	POPTR_0006s26820 (11)	scaffold_6:24908084-24910131(+) (11)	NA	O22969	Uncharacterized protein At2g34160	AT2G34160.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4244.1.S1_s_at	A	A1TS	POPTR_0005s11690	POPTR_0005s11690 (11)	scaffold_5:8518626-8519126(-) (11)	NA	Q3TSG4	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4245.1.S1_at	A	A1TS	POPTR_0004s20930	POPTR_0004s20930 (11)	scaffold_4:20287263-20287928(+) (11)	NA	Q9DE26	RuvB-like 1	AT5G22330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g62040.1	"ruvB-like, putative, expressed"	Medtr3g140320.1	"AAA ATPase; TIP49, C-terminal "	NA	GO:0003678|DNA helicase activity||GO:0005524|ATP binding	NA
Ptp.4246.1.S1_s_at	A	A1TS	POPTR_0003s15280	POPTR_0003s15280 (10)	scaffold_3:15121450-15127048(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.4250.1.S1_at	A	A1TS	POPTR_0011s15980	POPTR_0011s15980 (11)	scaffold_11:17973204-17973837(+) (11)	NA	A4FV84	mRNA turnover protein 4 homolog	AT1G25260.1	Ribosomal protein L10 family protein 	LOC_Os11g01420.1	"ribosomal protein L10, putative, expressed"	Medtr2g007880.1	Ribosomal protein L10 	GO:0042254|ribosome biogenesis	NA	GO:0005622|intracellular
Ptp.4255.1.S1_at	A	A1TS	POPTR_0006s11580	POPTR_0006s11580 (11)	scaffold_6:8785516-8786075(-) (11)	NA	Q0DCT8	Protein kinase G11A	AT3G52890.2	KCBP-interacting protein kinase 	LOC_Os12g29580.1	"AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr7g126960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4256.1.S1_at	A	A1TS	POPTR_0002s26400	POPTR_0002s26400 (11)	scaffold_2:23374491-23374866(-) (11)	POPTR_0014s17920 (7)	Q8L5U0	COP9 signalosome complex subunit 4	AT5G42970.1	Proteasome component (PCI) domain protein 	LOC_Os03g10120.2	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4256.1.S1_s_at	A	A1TS	POPTR_0002s26400	POPTR_0002s26400 (11)	scaffold_2:23373010-23374484(-) (11)	POPTR_0014s17920 (6)	Q8L5U0	COP9 signalosome complex subunit 4	AT5G42970.1	Proteasome component (PCI) domain protein 	LOC_Os03g10120.2	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4257.1.A1_at	A	A1TS	POPTR_0019s03540	POPTR_0019s03540 (11)	scaffold_19:3630337-3630385(+) (11)	NA	NA	NA	AT5G28490.1	Protein of unknown function (DUF640) 	LOC_Os06g46030.1	"DUF640 domain containing protein, putative, expressed"	Medtr5g080780.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4258.1.A1_at	A	A1TS	POPTR_0010s23570	POPTR_0010s23570 (11)	scaffold_10:20105758-20108409(-) (11)	NA	Q93Z04	Probable pectate lyase 13	AT5G04310.1	Pectin lyase-like superfamily protein 	LOC_Os10g31910.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.426.1.A1_s_at	A	A1TS	POPTR_0001s37580	POPTR_0001s37580 (11)	scaffold_1:36548842-36549139(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4262.1.S1_at	A	A1TS	POPTR_0017s13360	POPTR_0017s13360 (11)	scaffold_17:13541072-13541796(-) (11)	NA	Q9SRU7	"Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 2"	AT3G02320.1	"N2,N2-dimethylguanosine tRNA methyltransferase "	LOC_Os03g57280.1	"N-dimethylguanosine tRNA methyltransferase, putative, expressed"	NA	NA	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004809|tRNA (guanine-N2-)-methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.4263.1.A1_at	A	A1TS	POPTR_0001s09300	POPTR_0001s09300 (11)	scaffold_1:7098021-7098465(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT1G63470.1	AT hook motif DNA-binding family protein 	LOC_Os02g57820.1	"AT hook motif domain containing protein, expressed"	Medtr5g010440.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
Ptp.4265.1.A1_at	A	A1TS	POPTR_0014s16150	POPTR_0014s16150 (11)	scaffold_14:12214343-12214540(-) (11)	NA	Q9BYX2	TBC1 domain family member 2A	AT3G07890.2	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os08g25010.1	"TBC domain containing protein, expressed"	Medtr5g105820.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.4267.1.S1_at	A	A1TS	POPTR_0001s19180	POPTR_0001s19180 (11)	scaffold_1:16622953-16623030(-) (11)	NA	P27061	Acid phosphatase 1	AT4G25150.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr8g016170.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
Ptp.427.1.S1_at	A	A1TS	POPTR_0008s04090	POPTR_0008s04090 (11)	scaffold_8:2278826-2279919(-) (11)	NA	Q9LJZ5	Ubiquitin-conjugating enzyme E2 19	AT3G20060.1	ubiquitin-conjugating enzyme19 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr1g121450.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4270.1.S1_s_at	A	A1TS	POPTR_0014s00340	POPTR_0014s00340 (11)	scaffold_14:145172-145839(+) (11)	NA	Q6R2K1	Protein STRUBBELIG-RECEPTOR FAMILY 5	AT1G78980.1	STRUBBELIG-receptor family 5 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g163300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4271.1.S1_at	A	A1TS	POPTR_0003s22130	POPTR_0003s22130 (10)	scaffold_3:20054510-20054543(-) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010460.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4272.1.S1_at	A	A1TS	POPTR_0007s13250	POPTR_0007s13250 (10)	scaffold_7:13364992-13365324(-) (10)	NA	Q9SBK6	Jasmonate O-methyltransferase	AT4G36470.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50480.1	"SAM dependent carboxyl methyltransferase, putative"	Medtr5g048660.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.4273.1.A1_at	A	A1TS	POPTR_0006s14580	POPTR_0006s14580 (11)	scaffold_6:11917962-11918343(+) (11)	NA	NA	NA	AT2G28230.1	TATA-binding related factor (TRF) of subunit 20 of Mediator complex 	LOC_Os09g27140.2	expressed protein	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.4275.2.S1_at	A	A1TS	POPTR_0011s11640	POPTR_0011s11640 (11)	scaffold_11:14441296-14441355(+) (11)	NA	Q9FN32	Protein yippee-like At5g53940	AT5G53940.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g025460.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4278.1.S1_at	A	A1TS	POPTR_0011s16510	POPTR_0011s16510 (10)	scaffold_11:18387070-18387327(-) (10)	NA	NA	NA	AT4G20880.1	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) 	NA	NA	AC147501_24.1	"Putative transcription factor, AC147501.9 100411-98848 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.428.1.A1_at	A	A1TS	POPTR_0006s01600	POPTR_0006s01600 (11)	scaffold_6:971861-972520(+) (11)	NA	P54928	Inositol monophosphatase 3	AT3G02870.1	Inositol monophosphatase family protein 	LOC_Os03g39000.2	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
Ptp.4282.1.S1_s_at	A	A2TS	POPTR_0001s32200	POPTR_0001s32200 (11)//POPTR_0017s08190 (11)	scaffold_1:30618060-30618694(+) (11)//scaffold_17:6653934-6654517(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT4G13640.1	Homeodomain-like superfamily protein 	LOC_Os09g12750.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4282.3.S1_s_at	A	A1TS	POPTR_0001s32200	POPTR_0001s32200 (11)	scaffold_1:30619417-30619733(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT4G13640.1	Homeodomain-like superfamily protein 	LOC_Os09g12750.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4284.1.S1_s_at	A	A1TS	POPTR_0019s10590	POPTR_0019s10590 (11)	scaffold_19:12135586-12135759(-) (11)	NA	P54120	Protein AIG1	AT1G33970.5	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g35130.2	"AIG1, putative, expressed"	Medtr4g033020.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4287.1.S1_s_at	A	A1TS	POPTR_0006s25390	POPTR_0006s25390 (11)	scaffold_6:23787115-23787862(-) (11)	NA	Q39123	Homeobox-leucine zipper protein ATHB-8	AT4G32880.1	homeobox gene 8 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr3g130470.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.429.1.A1_s_at	A	A1TS	POPTR_0008s01320	POPTR_0008s01320 (11)	scaffold_8:642915-642966(+) (11)	NA	Q9CAF5	"ABC transporter I family member 6, chloroplastic"	AT3G10670.1	non-intrinsic ABC protein 7 	LOC_Os03g21490.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g161030.1	FeS assembly ATPase SufC 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.4290.1.S1_at	A	A1TS	POPTR_0010s11850	POPTR_0010s11850 (11)	scaffold_10:12004978-12005018(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4290.1.S1_s_at	A	A1TS	POPTR_0010s11850	POPTR_0010s11850 (11)	scaffold_10:12005082-12005154(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4290.1.S1_x_at	A	A1TS	POPTR_0010s11850	POPTR_0010s11850 (11)	scaffold_10:12004969-12005125(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4291.1.S1_at	A	A1TS	POPTR_0017s10860	POPTR_0017s10860 (9)	scaffold_17:10398675-10398882(-) (9)	NA	Q9FL07	RING-H2 finger protein ATL46	AT5G40250.1	RING/U-box superfamily protein 	LOC_Os02g50930.1	"RING-H2 finger protein, putative, expressed"	Medtr5g035920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4294.1.S1_at	A	A1TS	POPTR_0019s07820	POPTR_0019s07820 (11)	scaffold_19:9044008-9047308(-) (11)	NA	Q9M9M9	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	AT3G03100.1	"NADH:ubiquinone oxidoreductase, 17.2kDa subunit "	LOC_Os10g42840.1	"NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed"	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity||GO:0009055|electron carrier activity	GO:0016020|membrane
Ptp.4295.1.S1_at	A	A1TS	POPTR_0002s25620	POPTR_0002s25620 (11)	scaffold_2:22713210-22713264(+) (11)	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4295.2.S1_s_at	A	A1TS	POPTR_0002s25620	POPTR_0002s25620 (10)	scaffold_2:22712162-22712299(+) (10)	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4296.1.S1_at	A	A1MS	POPTR_0001s35190	POPTR_0001s35190 (10)	scaffold_1:33482320-33482507(-) (10)	NA	Q9FUZ2	"Peptide deformylase 1B, chloroplastic"	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
Ptp.4296.2.S1_at	A	A1TS	POPTR_0001s35190	POPTR_0001s35190 (11)	scaffold_1:33482302-33485920(-) (11)	NA	Q9FUZ2	"Peptide deformylase 1B, chloroplastic"	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
Ptp.43.1.S1_at	A	A1TS	POPTR_0016s01010	POPTR_0016s01010 (11)	scaffold_16:402026-404284(-) (11)	NA	B9IH36	UPF0497 membrane protein 5	AT2G35760.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g10030.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr2g030530.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.430.1.A1_at	A	A1TS	POPTR_0001s25440	POPTR_0001s25440 (11)	scaffold_1:24557705-24557854(+) (11)//scaffold_1:24568572-24568723(+) (11)//scaffold_2100:3631-3782(-) (11)	NA	NA	NA	AT5G01120.1	Protein of unknown function (DUF674) 	LOC_Os04g50800.1	expressed protein	Medtr2g085240.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4300.1.S1_s_at	A	A1TS	POPTR_0006s25030	POPTR_0006s25030 (11)	scaffold_6:23476081-23476476(-) (11)	NA	O82804	Protein EARLY FLOWERING 3	AT2G25930.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g38530.1	"ELF3 protein, putative, expressed"	Medtr3g140450.1	"early flowering 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4301.1.S1_s_at	A	A1TS	POPTR_0005s08350	POPTR_0005s08350 (11)	scaffold_5:5755308-5755736(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4301.2.S1_at	A	A1MS	POPTR_0005s08350	POPTR_0005s08350 (9)	scaffold_5:5757379-5757663(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4302.1.S1_s_at	A	A1TS	POPTR_0015s06880	POPTR_0015s06880 (11)	scaffold_15:7906517-7906569(-) (11)	NA	Q9SD84	"Glucan endo-1,3-beta-glucosidase-like protein 3"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4305.1.S1_s_at	A	A1TS	POPTR_0017s13090	POPTR_0017s13090 (11)	scaffold_17:13263021-13263920(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os11g41150.1	"nitrilase-associated protein, putative, expressed"	Medtr7g025650.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4306.1.S1_at	A	A1TS	POPTR_0012s01250	POPTR_0012s01250 (11)	scaffold_12:870264-870486(+) (11)	NA	P35133	Ubiquitin-conjugating enzyme E2 10	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4308.1.S1_at	A	A1TA	POPTR_0011s16160	POPTR_0011s16160 (11)	scaffold_11:18088755-18089269(-) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30700.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.431.1.A1_at	A	A1TS	POPTR_0009s09260	POPTR_0009s09260 (11)	scaffold_9:8273216-8273686(+) (11)	NA	Q9FMF5	Root phototropism protein 3	AT2G14820.1	Phototropic-responsive NPH3 family protein 	LOC_Os12g39380.1	"BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr1g135040.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.4311.1.S1_at	A	A1TS	POPTR_0005s02760	POPTR_0005s02760 (11)	scaffold_5:1767948-1770082(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4312.1.S1_s_at	A	A1TS	POPTR_0001s07890	POPTR_0001s07890 (11)	scaffold_1:5981321-5982048(+) (11)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4315.1.S1_at	A	A1TS	POPTR_0006s00640	POPTR_0006s00640 (10)	scaffold_6:336594-337056(-) (10)	NA	Q32L00	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3	AT2G22260.1	"oxidoreductase, 2OG-Fe(II) oxygenase family protein "	LOC_Os06g17830.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g032760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4316.1.S1_a_at	A	A1TS	POPTR_0018s12330	POPTR_0018s12330 (11)	scaffold_18:12823670-12823800(-) (11)	NA	P42733	40S ribosomal protein S11-3	AT5G23740.1	ribosomal protein S11-beta 	LOC_Os08g10608.1	"ribosomal protein S17, putative, expressed"	Medtr8g092770.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4318.1.S1_s_at	A	A1TS	POPTR_0001s20390	POPTR_0001s20390 (11)	scaffold_1:18306343-18309095(+) (11)	NA	Q84LG4	Coatomer subunit zeta-2	AT4G08520.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr8g020930.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.4320.1.S1_at	A	A1TS	POPTR_0001s45000	POPTR_0001s45000 (11)	scaffold_1:45318020-45318759(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT4G27000.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g37270.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4321.1.S1_at	A	A1TS	POPTR_0006s06730	POPTR_0006s06730 (9)	scaffold_6:4869372-4869886(+) (9)	NA	A1L272	Equilibrative nucleoside transporter 4	AT1G02630.1	Nucleoside transporter family protein 	LOC_Os08g10450.1	"nucleoside transporter, putative, expressed"	Medtr8g120640.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
Ptp.4322.1.S1_at	A	A1TS	POPTR_0009s02830	POPTR_0009s02830 (10)	scaffold_9:3584176-3584524(+) (10)	NA	Q91YT2	RING finger protein 185	AT2G44410.1	RING/U-box superfamily protein 	LOC_Os01g61420.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g031580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4325.1.S1_s_at	A	A1TS	POPTR_0003s03400	POPTR_0003s03400 (11)	scaffold_3:3783752-3783788(-) (11)	NA	NA	NA	AT4G17670.1	Protein of unknown function (DUF581) 	LOC_Os04g49660.1	"DUF581 domain containing protein, expressed"	Medtr5g013920.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4327.1.S1_s_at	A	A1TS	POPTR_0006s14170	POPTR_0006s14170 (11)	scaffold_6:11499775-11500214(-) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G42950.1	Pectin lyase-like superfamily protein 	LOC_Os09g26800.1	"polygalacturonase, putative, expressed"	Medtr2g050070.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.4329.1.S1_s_at	A	A1TS	POPTR_0011s16680	POPTR_0011s16680 (11)	scaffold_11:18472305-18473244(+) (11)	NA	NA	NA	AT1G56200.2	embryo defective 1303 	NA	NA	Medtr3g079930.1	"EMB1303, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.433.1.A1_at	A	A1TS	POPTR_0001s03060	POPTR_0001s03060 (10)	scaffold_1:2412512-2413288(-) (10)	NA	Q9M9S4	Probable LRR receptor-like serine/threonine-protein kinase At1g14390	AT1G14390.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g38970.1	expressed protein	Medtr5g039640.1	Protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.4330.1.S1_a_at	A	A1TS	POPTR_0012s13060	POPTR_0012s13060 (11)	scaffold_12:13361486-13362329(+) (11)	NA	Q9M352	60S ribosomal protein L36-2	AT3G53740.4	Ribosomal protein L36e family protein 	LOC_Os05g38520.4	"60S ribosomal protein L36-2, putative, expressed"	Medtr1g126960.2	Ribosomal protein L36E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4331.1.S1_at	A	A1TS	POPTR_0012s07830	POPTR_0012s07830 (11)	scaffold_12:8777368-8777667(-) (11)	NA	Q9SIP7	40S ribosomal protein S3-1	AT2G31610.1	Ribosomal protein S3 family protein 	LOC_Os07g41750.1	"40S ribosomal protein S3-1, putative, expressed"	Medtr1g069030.1	Eukaryotic/archaeal ribosomal protein S3 	NA	GO:0003723|RNA binding	NA
Ptp.4333.1.S1_s_at	A	A1TS	POPTR_0009s09220	POPTR_0009s09220 (11)	scaffold_9:8229843-8232335(-) (11)	NA	Q9N4Y9	Zinc finger protein-like 1 homolog	AT2G14835.2	RING/U-box superfamily protein 	LOC_Os10g20600.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g135130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4334.1.S1_s_at	A	A1TS	POPTR_0001s05070	POPTR_0001s05070 (11)	scaffold_1:3899122-3899464(-) (11)	NA	Q7F8R0	Zinc finger CCCH domain-containing protein 14	AT3G12130.1	KH domain-containing protein / zinc finger (CCCH type) family protein 	LOC_Os02g10080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g111840.1	"Zinc finger, CCCH-type; KH, type 1 "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
Ptp.4335.1.S1_at	A	A1TS	POPTR_0006s01040	POPTR_0006s01040 (11)	scaffold_6:595197-595407(+) (11)	NA	P52427	Proteasome subunit alpha type-4	AT3G22110.1	20S proteasome alpha subunit C1 	LOC_Os06g07140.1	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4336.1.S1_at	A	A1TS	POPTR_0016s07640	POPTR_0016s07640 (11)	scaffold_16:5481575-5482799(+) (11)	NA	Q5ASQ0	Peptidyl-prolyl cis-trans isomerase-like 1	AT2G36130.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g44520.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.4336.1.S1_x_at	A	A1TS	POPTR_0016s07640	POPTR_0016s07640 (11)	scaffold_16:5481575-5482885(+) (11)	NA	Q5ASQ0	Peptidyl-prolyl cis-trans isomerase-like 1	AT2G36130.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g44520.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.4338.1.S1_at	A	A1TS	POPTR_0010s09810	POPTR_0010s09810 (11)	scaffold_10:10429665-10429708(-) (11)	NA	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4341.1.S1_at	A	A1TS	POPTR_0009s02400	POPTR_0009s02400 (11)	scaffold_9:3153629-3155572(+) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT5G21090.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g59440.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g094910.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.4342.1.S1_at	A	A1TS	POPTR_0002s24310	POPTR_0002s24310 (11)	scaffold_2:21702940-21703139(-) (11)	NA	Q6ICB0	PPPDE peptidase domain-containing protein 2	AT3G07090.1	PPPDE putative thiol peptidase family protein 	LOC_Os02g56900.1	"thioredoxin family protein, putative, expressed"	Medtr7g064580.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4342.1.S1_x_at	A	A1TS	POPTR_0002s24310	POPTR_0002s24310 (11)	scaffold_2:21702655-21703138(-) (11)	NA	Q6ICB0	PPPDE peptidase domain-containing protein 2	AT3G07090.1	PPPDE putative thiol peptidase family protein 	LOC_Os02g56900.1	"thioredoxin family protein, putative, expressed"	Medtr7g064580.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4343.1.S1_at	A	A1TS	POPTR_0017s02410	POPTR_0017s02410 (10)	scaffold_17:1747507-1748107(+) (10)	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os04g53620.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4343.1.S1_s_at	A	A1TS	POPTR_0017s02410	POPTR_0017s02410 (11)	scaffold_17:1748106-1748241(+) (11)	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os04g53620.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4344.1.S1_at	A	A1TS	POPTR_0014s17940	POPTR_0014s17940 (11)	scaffold_14:14494087-14495312(-) (11)	NA	NA	NA	AT5G42960.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g63860.1	"DANA2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4345.1.S1_at	A	A1TS	POPTR_0016s02600	POPTR_0016s02600 (10)	scaffold_16:1281514-1282931(-) (10)	NA	Q93YF5	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1"	AT1G73100.1	SU(VAR)3-9 homolog 3 	LOC_Os05g41172.2	"histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed"	Medtr7g105180.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.4346.1.S1_at	A	A1TS	POPTR_0008s05310	POPTR_0008s05310 (11)	scaffold_8:3086494-3088161(+) (11)	NA	NA	NA	AT5G59613.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). 	LOC_Os03g40920.1	expressed protein	Medtr2g114440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4346.1.S1_x_at	A	A1TS	POPTR_0008s05310	POPTR_0008s05310 (11)	scaffold_8:3086494-3088161(+) (11)	NA	NA	NA	AT5G59613.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). 	LOC_Os03g40920.1	expressed protein	Medtr2g114440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4348.1.A1_at	A	A1TS	POPTR_0013s04050	POPTR_0013s04050 (9)	scaffold_13:2680463-2680865(-) (9)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os12g40530.1	"transposon protein, putative, unclassified, expressed"	Medtr1g094000.1	"Plant MuDR transposase; Zinc finger, PMZ-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.435.1.A1_a_at	A	A1TS	POPTR_0002s24100	POPTR_0002s24100 (11)	scaffold_2:21544475-21544627(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4350.1.S1_at	A	A1TS	POPTR_0008s01000	POPTR_0008s01000 (11)	scaffold_8:468361-468599(-) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT1G17745.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os06g44460.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
Ptp.4358.1.S1_at	A	A1TS	POPTR_0009s10160	POPTR_0009s10160 (9)	scaffold_9:8800457-8800945(-) (9)	NA	NA	NA	AT5G67210.1	Protein of unknown function (DUF579) 	LOC_Os06g47310.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr4g130370.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4361.1.S1_s_at	A	A1TS	POPTR_0008s09680	POPTR_0008s09680 (11)	scaffold_8:5987142-5987373(+) (11)	NA	Q9LMX8	Probable 6-phosphogluconolactonase 1	AT1G13700.1	6-phosphogluconolactonase 1 	LOC_Os07g41280.3	"6-phosphogluconolactonase, putative, expressed"	Medtr5g047620.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4362.1.S1_at	A	A1TS	POPTR_0017s07940	POPTR_0017s07940 (10)	scaffold_17:6322450-6323035(-) (10)	POPTR_0017s07920 (7)//POPTR_0017s07880 (7)//POPTR_0017s07900 (6)	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4363.1.S1_at	A	A1TS	POPTR_0010s13460	POPTR_0010s13460 (9)	scaffold_10:13283903-13284437(+) (9)	NA	NA	NA	AT1G13380.1	Protein of unknown function (DUF1218) 	LOC_Os09g10910.3	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4364.1.S1_at	A	A1TS	POPTR_0003s19250	POPTR_0003s19250 (10)	scaffold_3:18038597-18039051(-) (10)	NA	P52839	Flavonol sulfotransferase-like	AT5G07010.1	sulfotransferase 2A 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
Ptp.4364.1.S1_s_at	A	A2TS	POPTR_0003s19260	POPTR_0003s19260 (11)//POPTR_0003s19250 (9)	scaffold_3:18038568-18042919(-) (11)//scaffold_3:18042452-18042841(-) (9)	NA	P52839	Flavonol sulfotransferase-like	AT5G07010.1	sulfotransferase 2A 	LOC_Os04g44460.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
Ptp.4365.1.S1_at	A	A1TS	POPTR_0011s02520	POPTR_0011s02520 (11)	scaffold_11:2419565-2424756(-) (11)	NA	O74545	Putative hydrolase C777.06c	AT1G30300.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os12g42100.1	"phosphonate metabolism protein-related, putative"	Medtr2g022220.1	"phosphonate metabolism protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4366.1.S1_at	A	A1TS	POPTR_0001s05970	POPTR_0001s05970 (9)	scaffold_1:4684410-4684522(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4367.1.S1_s_at	A	A1TS	POPTR_0011s05250	POPTR_0011s05250 (11)	scaffold_11:5138513-5138900(+) (11)	NA	Q05758	"Ketol-acid reductoisomerase, chloroplastic"	AT3G58610.3	ketol-acid reductoisomerase 	LOC_Os05g49800.1	"ketol-acid reductoisomerase, chloroplast precursor, putative, expressed"	Medtr4g109610.1	Acetohydroxy acid isomeroreductase; ; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009082|branched chain family amino acid biosynthetic process	GO:0004455|ketol-acid reductoisomerase activity	NA
Ptp.4369.1.S1_s_at	A	A1TS	POPTR_0008s04170	POPTR_0008s04170 (11)	scaffold_8:2336432-2336549(-) (11)	NA	NA	NA	AT4G25030.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g43060.1	expressed protein	Medtr1g121550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4370.1.S1_s_at	A	A1TS	POPTR_0010s19420	POPTR_0010s19420 (11)	scaffold_10:17328111-17328166(-) (11)	NA	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
Ptp.4371.1.A1_at	A	A1TS	POPTR_0008s05970	POPTR_0008s05970 (10)	scaffold_8:3518286-3518461(-) (11)	NA	Q9C912	60S ribosomal protein L35a-3	AT1G74270.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4371.2.A1_s_at	A	A1TS	POPTR_0008s05970	POPTR_0008s05970 (11)	scaffold_8:3518494-3519788(-) (11)	NA	Q9C912	60S ribosomal protein L35a-3	AT1G74270.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4373.1.S1_at	A	A1TS	POPTR_0005s26740	POPTR_0005s26740 (11)	scaffold_5:24629374-24629705(-) (11)	NA	P00299	"Plastocyanin A, chloroplastic"	AT1G76100.1	plastocyanin 1 	LOC_Os06g01210.1	"plastocyanin, chloroplast precursor, putative, expressed"	Medtr3g157410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.4373.1.S1_x_at	A	A1TS	POPTR_0005s26740	POPTR_0005s26740 (11)	scaffold_5:24629369-24629705(-) (11)	NA	P00299	"Plastocyanin A, chloroplastic"	AT1G76100.1	plastocyanin 1 	LOC_Os06g01210.1	"plastocyanin, chloroplast precursor, putative, expressed"	Medtr3g157410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.4375.1.S1_s_at	A	A1TS	POPTR_0003s10400	POPTR_0003s10400 (11)	scaffold_3:11396718-11397641(+) (11)	POPTR_0001s01130 (6)	P41091	Eukaryotic translation initiation factor 2 subunit 3	AT1G04170.1	eukaryotic translation initiation factor 2 gamma subunit 	LOC_Os12g41400.1	"eukaryotic translation initiation factor 2 subunit gamma, putative, expressed"	Medtr2g091680.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.4376.1.S1_at	A	A1TS	POPTR_0016s02850	POPTR_0016s02850 (10)	scaffold_16:1408440-1408979(-) (10)	NA	Q84LH3	Werner Syndrome-like exonuclease	AT4G13870.1	Werner syndrome-like exonuclease 	LOC_Os01g53580.1	"3-5 exonuclease domain-containing protein, putative"	Medtr2g085350.1	"Polynucleotidyl transferase, Ribonuclease H fold "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.4378.1.S1_s_at	A	A1TS	POPTR_0006s03090	POPTR_0006s03090 (11)	scaffold_6:1965764-1966298(+) (11)	NA	NA	NA	AT3G56880.1	VQ motif-containing protein 	LOC_Os01g17050.1	"VQ domain containing protein, putative, expressed"	Medtr7g105490.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4379.1.S1_s_at	A	A1TS	POPTR_0004s22600	POPTR_0004s22600 (11)	scaffold_4:21469761-21469939(-) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.438.1.S1_at	A	A1TS	POPTR_0001s35610	POPTR_0001s35610 (11)	scaffold_1:33954857-33955748(+) (11)	NA	NA	NA	AT3G27460.1	SGF29 tudor-like domain 	LOC_Os12g19350.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4380.1.S1_s_at	A	A1TS	POPTR_0003s04310	POPTR_0003s04310 (11)	scaffold_3:5023641-5023687(-) (11)	NA	NA	NA	AT3G13882.1	Ribosomal protein L34 	LOC_Os01g39010.1	"50S ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4381.1.S1_s_at	A	A1TS	POPTR_0003s06510	POPTR_0003s06510 (11)	scaffold_3:7993695-7993879(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4381.2.A1_a_at	A	A1TS	POPTR_0003s06510	POPTR_0003s06510 (11)	scaffold_3:7975257-7975342(-) (11)//scaffold_3:7994257-7994342(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4382.1.S1_s_at	A	A1TS	POPTR_0010s23380	POPTR_0010s23380 (11)	scaffold_10:19983473-19984058(-) (11)	NA	Q93YU5	Probable exocyst complex component 4	AT3G10380.1	subunit of exocyst complex 8 	LOC_Os08g22864.1	"sec8 exocyst complex component specific domain containing protein, expressed"	Medtr5g017660.1	hypothetical protein 	GO:0006904|vesicle docking during exocytosis||GO:0015031|protein transport	NA	GO:0000145|exocyst
Ptp.4385.1.S1_a_at	A	A1TS	POPTR_0010s02690	POPTR_0010s02690 (11)	scaffold_10:3141139-3142982(+) (11)	NA	NA	NA	AT5G18800.2	Cox19-like CHCH family protein 	LOC_Os03g18420.1	"CHCH domain containing protein, expressed"	AC233070_20.1	CHCH AC233070.4 91111-95201 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4385.1.S1_at	A	A1TS	POPTR_0010s02690	POPTR_0010s02690 (11)	scaffold_10:3143027-3143100(+) (11)	NA	NA	NA	AT5G18800.2	Cox19-like CHCH family protein 	LOC_Os03g18420.1	"CHCH domain containing protein, expressed"	AC233070_20.1	CHCH AC233070.4 91111-95201 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4387.1.S1_at	A	A1TS	POPTR_0009s13940	POPTR_0009s13940 (11)	scaffold_9:11006489-11007315(-) (11)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4389.1.A1_s_at	A	A1TS	POPTR_0018s00660	POPTR_0018s00660 (11)	scaffold_18:578912-579322(+) (11)	NA	NA	NA	AT4G32750.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g17250.1	expressed protein	AC225507_2.1	hypothetical protein AC225507.11 13063-9895 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4391.2.A1_s_at	A	A1TS	POPTR_0001s02900	POPTR_0001s02900 (11)	scaffold_1:2288151-2289229(-) (11)	NA	NA	NA	AT1G32400.3	tobamovirus multiplication 2A 	LOC_Os08g18044.2	"tetraspanin family protein, putative, expressed"	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.4391.3.S1_at	A	A1MS	POPTR_0001s02900	POPTR_0001s02900 (11)	scaffold_1:2292966-2293006(-) (11)	NA	NA	NA	AT1G32400.3	tobamovirus multiplication 2A 	LOC_Os08g18044.2	"tetraspanin family protein, putative, expressed"	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.4392.1.S1_at	A	A1TS	POPTR_0004s21790	POPTR_0004s21790 (10)	scaffold_4:20795294-20795853(-) (10)	NA	Q99JW2	Aminoacylase-1	AT4G38220.2	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046740.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.4393.1.S1_s_at	A	A1TS	POPTR_0013s04470	POPTR_0013s04470 (11)	scaffold_13:3071016-3071250(+) (11)	NA	Q86YJ7	Ankyrin repeat domain-containing protein 13B	AT3G04470.1	Ankyrin repeat family protein 	LOC_Os02g56530.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4394.1.S1_at	A	A1TS	POPTR_0021s00770	POPTR_0021s00770 (9)	scaffold_21:439241-439506(-) (9)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT1G50660.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). 	LOC_Os05g41910.1	expressed protein	Medtr5g099930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4395.1.S1_s_at	A	A1TS	POPTR_0008s19790	POPTR_0008s19790 (11)	scaffold_8:13649357-13650648(+) (11)	NA	Q8VXV4	Chaperone protein dnaJ 16	AT1G24120.1	ARG1-like 1 	LOC_Os02g50760.2	"heat shock protein DnaJ, putative, expressed"	Medtr5g036860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.4396.1.S1_at	A	A1TS	POPTR_0005s26890	POPTR_0005s26890 (11)	scaffold_5:24735822-24735913(-) (11)	NA	P51659	Peroxisomal multifunctional enzyme type 2	AT1G76150.1	enoyl-CoA hydratase 2 	LOC_Os09g37280.2	"peroxisomal multifunctional enzyme type 2, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4396.1.S1_s_at	A	A1TS	POPTR_0005s26890	POPTR_0005s26890 (11)	scaffold_5:24734627-24735832(-) (11)	NA	P51659	Peroxisomal multifunctional enzyme type 2	AT1G76150.1	enoyl-CoA hydratase 2 	LOC_Os09g37280.2	"peroxisomal multifunctional enzyme type 2, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4397.1.S1_at	A	A1TS	POPTR_0004s14900	POPTR_0004s14900 (11)	scaffold_4:15562049-15562322(-) (11)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
Ptp.4400.1.S1_at	A	A1TS	POPTR_0014s12410	POPTR_0014s12410 (11)	scaffold_14:9161434-9164682(+) (11)	NA	NA	NA	AT2G47690.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os08g44250.1	"fiber protein Fb14, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4400.1.S1_s_at	A	A1TS	POPTR_0014s12410	POPTR_0014s12410 (11)	scaffold_14:9161446-9164509(+) (11)	NA	NA	NA	AT2G47690.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os08g44250.1	"fiber protein Fb14, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4402.2.S1_at	A	A1TS	POPTR_0008s07980	POPTR_0008s07980 (11)	scaffold_8:4926423-4928520(-) (11)	NA	Q941Q3	Zinc finger CCCH domain-containing protein 37	AT3G12680.1	floral homeotic protein (HUA1) 	LOC_Os01g42970.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g089530.1	"Zinc finger, CCCH-type; Sugar transporter superfamily "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.4403.1.S1_at	A	A1TS	POPTR_0010s18810	POPTR_0010s18810 (11)	scaffold_10:16935164-16935684(-) (11)	NA	Q921G8	Gamma-tubulin complex component 2	AT5G17410.2	Spc97 / Spc98 family of spindle pole body (SBP) component 	LOC_Os04g42330.1	"Spc97 / Spc98 family protein, putative, expressed"	Medtr8g011890.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
Ptp.4404.1.S1_at	A	A1TS	POPTR_0018s13190	POPTR_0018s13190 (11)	scaffold_18:13607826-13608472(-) (11)	NA	Q9C9W0	ABC transporter I family member 17	AT1G67940.1	non-intrinsic ABC protein 3 	LOC_Os06g48060.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g154730.1	ABC transporter related 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.4406.2.S1_a_at	A	A1TS	POPTR_0010s23280	POPTR_0010s23280 (11)	scaffold_10:19881231-19882069(-) (11)	POPTR_0008s03620 (6)	P47082	Vacuolar amino acid transporter 1	AT2G39130.1	Transmembrane amino acid transporter family protein 	LOC_Os02g01100.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr1g120430.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4409.1.S1_at	A	A1TS	POPTR_0006s24980	POPTR_0006s24980 (11)	scaffold_6:23455082-23457657(-) (11)	NA	Q3B8G0	UPF0587 protein C1orf123 homolog	AT4G32930.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF866, eukaryotic (InterPro:IPR008584); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g38480.1	"GA18326-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.441.1.A1_at	A	A1TS	POPTR_0012s14980	POPTR_0012s14980 (11)	scaffold_12:14659950-14660276(-) (11)	POPTR_0012s12320 (6)	O23708	Proteasome subunit alpha type-2-A	AT1G16470.2	proteasome subunit PAB1 	LOC_Os02g42320.2	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4410.1.S1_at	A	A1TS	POPTR_0001s11200	POPTR_0001s11200 (10)	scaffold_1:8691066-8691404(+) (10)	NA	Q6GQ69	FAS-associated factor 2-B	AT4G10790.1	UBX domain-containing protein 	LOC_Os10g37630.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4411.2.S1_at	A	A1TA	POPTR_0018s11410	POPTR_0018s11410 (9)	scaffold_18:12162320-12162364(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g145140.1	Protein of unknown function UPF0057 	NA	NA	GO:0016021|integral to membrane
Ptp.4412.2.S1_s_at	A	A1TS	POPTR_0006s25160	POPTR_0006s25160 (11)	scaffold_6:23590289-23590524(+) (11)	NA	Q9M077	Serine/threonine-protein kinase Aurora-1	AT4G32830.1	ataurora1 	LOC_Os01g09580.2	"CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g128170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4413.2.S1_s_at	A	A1TS	POPTR_0001s03040	POPTR_0001s03040 (11)	scaffold_1:2391885-2392593(-) (11)//scaffold_1973:2736-3311(-) (9)	POPTR_1973s00200 (8)	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.4414.1.S1_at	A	A1MS	POPTR_0004s03780	POPTR_0004s03780 (9)	scaffold_4:2637074-2637204(-) (9)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4414.2.S1_s_at	A	A1TS	POPTR_0004s03780	POPTR_0004s03780 (11)	scaffold_4:2637206-2638391(-) (11)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4415.1.S1_at	A	A1TS	POPTR_0011s13810	POPTR_0011s13810 (10)	scaffold_11:16451008-16451047(+) (10)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.1	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.4415.1.S1_x_at	A	A1TS	POPTR_0011s13810	POPTR_0011s13810 (10)	scaffold_11:16450315-16451078(+) (10)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.1	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.4419.1.S1_at	A	A1TS	POPTR_0002s11330	POPTR_0002s11330 (11)	scaffold_2:8381036-8382304(+) (11)	NA	O80594	Ergosterol biosynthetic protein 28	AT1G10030.1	homolog of yeast ergosterol28 	LOC_Os12g43670.1	"ergosterol biosynthetic protein 28, putative, expressed"	Medtr3g128010.1	Protein of unknown function UPF0143 	NA	NA	GO:0016021|integral to membrane
Ptp.442.1.S1_at	A	A1TS	POPTR_0018s03890	POPTR_0018s03890 (9)	scaffold_18:3323749-3325323(+) (9)	NA	P57722	Poly(rC)-binding protein 3	AT4G26000.1	RNA-binding KH domain-containing protein 	LOC_Os10g41440.1	"KH domain containing protein, putative, expressed"	Medtr8g129730.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.4420.1.S1_s_at	A	A1TS	POPTR_0013s09550	POPTR_0013s09550 (11)	scaffold_13:9310442-9312363(+) (11)	NA	NA	NA	AT4G10300.1	RmlC-like cupins superfamily protein 	LOC_Os04g36760.1	"enzyme of the cupin superfamily protein, putative, expressed"	Medtr7g034850.1	"Cupin, RmlC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4421.1.A1_s_at	A	A7TS	POPTR_0001s39630	POPTR_0001s39650 (11)//POPTR_0001s39630 (11)//POPTR_0001s39680 (11)//POPTR_0001s39660 (11)//POPTR_0001s39920 (11)//POPTR_0001s39670 (10)//POPTR_0001s39940 (10)	scaffold_1:38850220-38850526(+) (11)//scaffold_1:38884382-38884688(+) (11)//scaffold_1:38925017-38933813(+) (11)//scaffold_1:38933507-38940406(+) (10)//scaffold_1:38976897-38977203(+) (11)//scaffold_1:39174688-39174994(+) (11)//scaffold_1:39215495-39215786(+) (10)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4425.1.S1_s_at	A	A2MS	POPTR_0016s01220	POPTR_0016s01220 (11)//POPTR_0016s01230 (11)	scaffold_16:517350-517421(-) (11)//scaffold_16:525319-525390(+) (11)	NA	P54928	Inositol monophosphatase 3	AT3G02870.1	Inositol monophosphatase family protein 	LOC_Os03g39000.2	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
Ptp.4430.1.S1_a_at	A	A1TS	POPTR_0008s12110	POPTR_0008s12110 (11)	scaffold_8:7810770-7811442(-) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.4432.1.A1_s_at	A	A1TS	POPTR_0004s08050	POPTR_0004s08050 (11)	scaffold_4:6580047-6580757(+) (11)	NA	Q6INR1	Eukaryotic translation initiation factor 3 subunit J	AT1G66070.2	Translation initiation factor eIF3 subunit 	LOC_Os02g02990.1	"translation initiation factor eIF3 subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4433.1.S1_at	A	A1TS	POPTR_0018s06470	POPTR_0018s06470 (11)	scaffold_18:6379717-6381684(-) (11)	NA	Q9SR77	"Heme-binding-like protein At3g10130, chloroplastic"	AT5G20140.2	SOUL heme-binding family protein 	LOC_Os06g39690.1	"SOUL heme-binding protein, putative, expressed"	Medtr2g058890.1	SOUL heme-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4435.1.S1_s_at	A	A1TS	POPTR_0013s06430	POPTR_0013s06430 (11)	scaffold_13:5005979-5007152(-) (11)	NA	Q8DJB3	Protein grpE	AT5G17710.2	Co-chaperone GrpE family protein 	LOC_Os02g39870.1	"co-chaperone GrpE protein, putative, expressed"	Medtr7g104090.1	"GrpE protein, head "	GO:0006457|protein folding||GO:0030150|protein import into mitochondrial matrix||GO:0044260|cellular macromolecule metabolic process	GO:0000774|adenyl-nucleotide exchange factor activity||GO:0051087|chaperone binding||GO:0042803|protein homodimerization activity	GO:0005739|mitochondrion
Ptp.4437.1.S1_s_at	A	A1TS	POPTR_0005s26340	POPTR_0005s26340 (11)	scaffold_5:24410575-24411713(+) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4438.1.S1_s_at	A	A1TS	POPTR_0019s10050	POPTR_0019s10050 (11)	scaffold_19:11676328-11678685(+) (11)	NA	NA	NA	AT2G21195.1	unknown protein; Has 28 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g16150.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4439.1.S1_at	A	A1TS	POPTR_0013s06780	POPTR_0013s06780 (11)	scaffold_13:5487055-5487192(+) (11)	NA	Q08747	Upstream activation factor subunit UAF30	AT2G35605.1	SWIB/MDM2 domain superfamily protein 	LOC_Os02g03730.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4439.1.S1_s_at	A	A1TS	POPTR_0013s06780	POPTR_0013s06780 (11)	scaffold_13:5485852-5487069(+) (11)	NA	Q08747	Upstream activation factor subunit UAF30	AT2G35605.1	SWIB/MDM2 domain superfamily protein 	LOC_Os02g03730.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4441.1.S1_at	A	A1TS	POPTR_0014s05130	POPTR_0014s05130 (9)	scaffold_14:3905835-3907021(-) (9)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4441.1.S1_x_at	A	A1TS	POPTR_0014s05130	POPTR_0014s05130 (9)	scaffold_14:3905674-3907021(-) (9)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4442.1.S1_at	A	A1TS	POPTR_0014s14310	POPTR_0014s14310 (11)	scaffold_14:10466495-10466962(-) (11)	NA	P35694	Brassinosteroid-regulated protein BRU1	AT3G23730.1	xyloglucan endotransglucosylase/hydrolase 16 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr3g104510.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.4443.1.S1_s_at	A	A1TS	POPTR_0019s14190	POPTR_0019s14190 (11)	scaffold_19:14941888-14942033(+) (11)	NA	NA	NA	AT1G11360.4	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os07g36600.2	"universal stress protein domain containing protein, putative, expressed"	Medtr2g103170.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.4444.1.S1_at	A	A1TS	POPTR_0008s12000	POPTR_0008s12000 (11)	scaffold_8:7738415-7739825(-) (11)	NA	P31165	"50S ribosomal protein L15, chloroplastic (Fragment)"	AT3G25920.1	ribosomal protein L15 	LOC_Os03g12020.1	"50S ribosomal protein L15, chloroplast precursor, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4445.1.S1_s_at	A	A1TS	POPTR_0016s07880	POPTR_0016s07880 (11)	scaffold_16:5706969-5707173(+) (11)//scaffold_354:31660-31864(+) (11)	NA	O82221	Probable small nuclear ribonucleoprotein G	AT3G11500.1	Small nuclear ribonucleoprotein family protein 	LOC_Os03g29740.1	"LSM domain containing protein, expressed"	Medtr7g127710.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4446.1.A1_s_at	A	A1TS	POPTR_0006s26940	POPTR_0006s26940 (11)	scaffold_6:24982891-24983499(-) (11)	NA	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.4446.2.A1_s_at	A	A2TS	POPTR_0006s26940	POPTR_0006s26940 (11)//POPTR_0018s01620 (9)	scaffold_6:24983610-24983830(-) (11)	NA	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.4448.1.S1_s_at	A	A2TS	POPTR_0004s06460	POPTR_0017s10730 (11)//POPTR_0004s06460 (11)	scaffold_17:10242808-10243471(+) (11)//scaffold_4:5229293-5229963(+) (11)	NA	O23710	Proteasome subunit beta type-7-A	AT3G27430.2	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os05g09490.2	"peptidase, T1 family, putative, expressed"	Medtr7g032520.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4449.1.S1_at	A	A1TS	POPTR_0004s18430	POPTR_0004s18430 (11)	scaffold_4:18331501-18332015(-) (11)	NA	NA	NA	AT4G38490.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g27690.5	expressed protein	NA	NA	GO:0006605|protein targeting	NA	GO:0016020|membrane
Ptp.4451.1.S1_x_at	A	A1TS	POPTR_0010s20700	POPTR_0010s20700 (11)	scaffold_10:18181773-18183617(+) (11)	NA	Q9LMK0	60S ribosomal protein L35a-1	AT1G07070.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4452.2.A1_s_at	A	A1TS	POPTR_0002s25510	POPTR_0002s25510 (11)	scaffold_2:22585680-22586631(+) (11)	NA	Q41228	"Photosystem I reaction center subunit IV A, chloroplastic"	AT2G20260.1	photosystem I subunit E-2 	LOC_Os07g25430.1	"photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed"	Medtr7g117870.1	Photosystem I reaction centre subunit IV/PsaE 	NA	NA	GO:0009538|photosystem I reaction center
Ptp.4453.1.S1_at	A	A1TS	POPTR_0016s12250	POPTR_0016s12250 (11)	scaffold_16:11601017-11602312(-) (11)	NA	Q6AZD4	Mitochondrial inner membrane protease subunit 2	AT3G08980.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os03g05430.1	"peptidase, putative, expressed"	Medtr5g007950.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4454.1.S1_s_at	A	A1TS	POPTR_0011s10920	POPTR_0011s10920 (11)	scaffold_11:13487132-13488304(+) (11)	NA	Q54XK2	Protein transport protein Sec61 subunit alpha	AT2G34250.2	SecY protein transport family protein 	LOC_Os03g11440.1	"protein transport protein Sec61 subunit alpha, putative, expressed"	Medtr8g092670.1	SecY protein; ABC transporter related 	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
Ptp.4455.1.S1_s_at	A	A1TS	POPTR_0008s06580	POPTR_0008s06580 (11)	scaffold_8:3918423-3918809(-) (11)	NA	Q7XSQ9	Probable aquaporin PIP1-2	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr3g093260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4456.1.S1_at	A	A1TS	POPTR_0013s14670	POPTR_0013s14670 (11)	scaffold_13:14815368-14816779(+) (11)	NA	Q9ZR07	"Frataxin, mitochondrial"	AT4G03240.1	frataxin homolog 	LOC_Os01g57460.1	"frataxin, putative, expressed"	Medtr6g081070.1	Frataxin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4457.1.S1_at	A	A1TS	POPTR_0006s28330	POPTR_0006s28330 (9)	scaffold_6:26043656-26043730(+) (9)	NA	Q9C5Z1	Eukaryotic translation initiation factor 3 subunit B	AT5G27640.1	translation initiation factor 3B1 	LOC_Os10g41960.1	"eukaryotic translation initiation factor 3 subunit B, putative, expressed"	Medtr3g138980.1	RNA-binding region RNP-1 (RNA recognition motif); 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4458.1.S1_s_at	A	A1TS	POPTR_0002s20900	POPTR_0002s20900 (11)	scaffold_2:17124867-17125345(-) (11)	NA	O65857	Probable glutathione S-transferase GSTF1	AT3G62760.1	Glutathione S-transferase family protein 	LOC_Os01g27260.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4459.1.S1_x_at	A	A1TS	POPTR_0015s00950	POPTR_0015s00950 (11)	scaffold_15:553983-555838(-) (11)	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.446.1.S1_at	A	A1TS	POPTR_0012s13820	POPTR_0012s13820 (9)	scaffold_12:13810839-13811067(+) (9)	NA	Q38872	Calcium-dependent protein kinase 6	AT1G12580.1	phosphoenolpyruvate carboxylase-related kinase 1 	LOC_Os06g03682.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g129530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4460.1.S1_at	A	A1TS	POPTR_0010s10470	POPTR_0010s10470 (11)	scaffold_10:10966438-10967183(-) (11)	NA	Q9ZTR1	Spermidine synthase 1	AT1G70310.1	spermidine synthase 2 	LOC_Os07g22600.1	"spermidine synthase, putative, expressed"	Medtr5g035800.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.4461.1.S1_at	A	A1TS	POPTR_0013s13110	POPTR_0013s13110 (10)	scaffold_13:13695551-13697115(-) (10)	NA	NA	NA	AT2G31725.1	Eukaryotic protein of unknown function (DUF842) 	LOC_Os11g14990.1	expressed protein	Medtr3g010480.1	"Protein of unknown function DUF842, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4463.1.S1_s_at	A	A1TS	POPTR_0001s27900	POPTR_0001s27900 (11)	scaffold_1:26749556-26750109(-) (11)	NA	O22827	Molybdopterin synthase catalytic subunit	AT2G43760.3	molybdopterin biosynthesis MoaE family protein 	LOC_Os02g04740.1	"molybdenum cofactor synthesis protein 2 large subunit, putative, expressed"	Medtr3g058670.1	Molybdopterin biosynthesis MoaE 	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.4465.1.S1_a_at	A	A1TS	POPTR_0010s25640	POPTR_0010s25640 (11)	scaffold_10:21226005-21226050(-) (11)	NA	Q06450	"ATP synthase subunit epsilon, mitochondrial"	AT1G51650.1	"ATP synthase epsilon chain, mitochondrial "	LOC_Os08g15170.1	"ATP synthase epsilon chain, mitochondrial, putative, expressed"	Medtr5g043990.1	Mitochondrial ATP synthase epsilon chain 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0000275|""mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"""
Ptp.4466.1.S1_at	A	A1TS	POPTR_0006s01600	POPTR_0006s01600 (11)	scaffold_6:968843-970116(+) (11)	NA	P54928	Inositol monophosphatase 3	AT3G02870.1	Inositol monophosphatase family protein 	LOC_Os03g39000.2	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
Ptp.4467.1.S1_at	A	A1TS	POPTR_0007s01410	POPTR_0007s01410 (10)	scaffold_7:798629-799279(-) (11)	NA	Q54Q31	Prohibitin-2	AT2G20530.2	prohibitin 6 	LOC_Os03g62490.1	"prohibitin-2, putative, expressed"	Medtr4g107930.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4468.1.S1_at	A	A1TS	POPTR_0007s14020	POPTR_0007s14020 (9)	scaffold_7:13959950-13960180(-) (9)	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.4470.1.S1_at	A	A1TS	POPTR_0016s00450	POPTR_0016s00450 (10)	scaffold_16:131805-132263(+) (10)	NA	Q9FIK0	6-phosphofructokinase 2	AT5G47810.1	phosphofructokinase 2 	LOC_Os09g30240.1	"phosphofructokinase, putative, expressed"	AC233669_7.1	Phosphofructokinase AC233669.2 25649-23969 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4471.1.S1_at	A	A1TS	POPTR_0007s12110	POPTR_0007s12110 (10)	scaffold_7:12430126-12430632(+) (10)	NA	Q41495	STS14 protein	AT5G66590.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr5g018750.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4472.1.S1_s_at	A	A1TS	POPTR_0009s08720	POPTR_0009s08720 (11)	scaffold_9:7884490-7885884(+) (11)	NA	NA	NA	AT4G33740.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 138092 Blast hits to 73110 proteins in 2951 species: Archae - 732; Bacteria - 17903; Metazoa - 48520; Fungi - 16808; Plants - 7078; Viruses - 1044; Other Eukaryotes - 46007 (source: NCBI BLink). 	LOC_Os06g36050.1	expressed protein	AC235005_3.1	hypothetical protein AC235005.1 9201-11167 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4473.1.S1_at	A	A1TS	POPTR_0017s06470	POPTR_0017s06470 (11)	scaffold_17:4958267-4959112(-) (11)	NA	O22059	Transcription factor CPC	AT2G46410.1	Homeodomain-like superfamily protein 	LOC_Os01g43180.1	"MYB family transcription factor, putative"	Medtr2g103740.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4475.1.S1_s_at	A	A1TS	POPTR_0006s12320	POPTR_0006s12320 (11)	scaffold_6:9487863-9488830(+) (11)	NA	P36862	GTP-binding protein yptV3	AT5G03530.1	RAB GTPase homolog C2A 	LOC_Os03g05280.1	"ras-related protein, putative, expressed"	Medtr3g143270.1	"Ras GTPase; Sigma-54 factor, interaction region; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4476.1.S1_a_at	A	A2TS	POPTR_0012s11500	POPTR_0015s12250 (11)//POPTR_0012s11500 (11)	scaffold_12:11909237-11909993(+) (11)//scaffold_15:12594055-12594851(+) (11)	NA	Q38946	Glutamate dehydrogenase 2	AT5G07440.2	glutamate dehydrogenase 2 	LOC_Os04g45970.1	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4476.3.S1_a_at	A	A1TS	POPTR_0012s11500	POPTR_0012s11500 (11)	scaffold_12:11910116-11910235(+) (11)	NA	Q38946	Glutamate dehydrogenase 2	AT5G07440.2	glutamate dehydrogenase 2 	LOC_Os04g45970.1	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4477.1.S1_at	A	A1TS	POPTR_0001s05690	POPTR_0001s05690 (11)	scaffold_1:4381872-4382393(+) (11)	POPTR_0003s20360 (6)	P25083	"ADP,ATP carrier protein, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4478.1.S1_s_at	A	A1TS	POPTR_0017s05700	POPTR_0017s05700 (11)	scaffold_17:4468635-4468723(+) (11)	NA	Q96288	Salt tolerance protein	AT1G06040.1	B-box zinc finger family protein 	LOC_Os04g41560.2	"B-box zinc finger family protein, putative, expressed"	Medtr2g118390.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.4479.1.S1_at	A	A1TS	POPTR_0030s00210	POPTR_0030s00210 (10)	scaffold_30:21203-21932(-) (10)	NA	Q5F3K4	WD repeat-containing protein 48	AT3G05090.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g06810.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g140230.1	WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4481.1.S1_a_at	A	A1TS	POPTR_0006s01850	POPTR_0006s01850 (11)	scaffold_6:1120650-1120827(+) (11)	NA	NA	NA	AT4G16410.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF751 (InterPro:IPR008470); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g41630.1	hypothetical protein	Medtr8g148490.1	Protein of unknown function DUF751 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4485.1.S1_at	A	A1TS	POPTR_0014s06330	POPTR_0014s06330 (10)	scaffold_14:4814872-4816037(+) (10)	NA	Q32LQ3	Probable O-sialoglycoprotein endopeptidase 2	AT2G45270.1	glycoprotease 1 	LOC_Os12g29990.1	"O-sialoglycoprotein endopeptidase, putative, expressed"	Medtr4g025830.1	"Peptidase M22, glycoprotease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.4486.1.S1_s_at	A	A1TS	POPTR_0006s23890	POPTR_0006s23890 (10)	scaffold_6:22607915-22607949(-) (10)	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
Ptp.4487.1.S1_at	A	A1TS	POPTR_0004s22500	POPTR_0004s22500 (11)	scaffold_4:21383059-21384385(+) (11)	NA	Q76LT9	Protein NEF1	AT4G29735.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g37070.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4488.1.S1_at	A	A1TS	POPTR_0001s01950	POPTR_0001s01950 (11)	scaffold_1:1426650-1427592(-) (11)	NA	Q9ZWQ7	Defender against cell death 1	AT2G35520.1	Defender against death (DAD family) protein 	LOC_Os04g32550.1	"defender against cell death 1, putative, expressed"	Medtr3g026150.1	Defender against death DAD protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4489.1.S1_at	A	A1TS	POPTR_0006s04640	POPTR_0006s04640 (10)	scaffold_6:3187988-3188491(+) (10)	NA	NA	NA	AT5G04000.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl. "	LOC_Os05g41620.1	expressed protein	Medtr7g108130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4491.1.S1_at	A	A1TS	POPTR_0009s01280	POPTR_0009s01280 (11)	scaffold_9:1495122-1499511(-) (11)	NA	Q9ZS21	Lactoylglutathione lyase	AT1G08110.4	lactoylglutathione lyase family protein / glyoxalase I family protein 	LOC_Os05g22970.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4492.2.S1_a_at	A	A1TS	POPTR_0002s21620	POPTR_0002s21620 (11)	scaffold_2:18142986-18144623(+) (11)	NA	NA	NA	AT5G55140.1	ribosomal protein L30 family protein 	LOC_Os08g01859.1	"ribosomal protein L30 containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4492.2.S1_s_at	A	A2TS	POPTR_0002s21620	POPTR_0002s21620 (11)//POPTR_0014s15570 (11)	scaffold_14:11591905-11592015(+) (11)//scaffold_2:18144005-18144115(+) (11)	NA	NA	NA	AT5G55140.1	ribosomal protein L30 family protein 	LOC_Os08g01859.1	"ribosomal protein L30 containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4493.1.S1_a_at	A	A1TS	POPTR_0009s09930	POPTR_0009s09930 (11)	scaffold_9:8681349-8681794(+) (11)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os04g20810.3	"receptor protein kinase, putative, expressed"	Medtr4g032150.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4493.1.S1_s_at	A	A1TS	POPTR_0009s09930	POPTR_0009s09930 (11)	scaffold_9:8681586-8681750(+) (11)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os04g20810.3	"receptor protein kinase, putative, expressed"	Medtr4g032150.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4494.1.S1_a_at	A	A1TS	POPTR_0015s11460	POPTR_0015s11460 (11)	scaffold_15:12039442-12040282(-) (11)	NA	Q9FI61	Ubiquitin-conjugating enzyme E2 27	AT5G50870.1	ubiquitin-conjugating enzyme 27 	LOC_Os01g70140.1	"ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed"	Medtr3g151060.1	"Ubiquitin-associated; Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4495.1.S1_s_at	A	A1TS	POPTR_0015s07950	POPTR_0015s07950 (11)	scaffold_15:9222003-9222636(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os06g37660.1	"OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed"	Medtr8g074360.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4495.2.S1_a_at	A	A1TS	POPTR_0012s07510	POPTR_0012s07510 (11)	scaffold_12:8424756-8424940(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os06g37660.1	"OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed"	Medtr8g074360.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4495.2.S1_s_at	A	A2TS	POPTR_0012s07510	POPTR_0012s07510 (11)//POPTR_0015s07950 (11)	scaffold_12:8424387-8424873(+) (11)//scaffold_15:9221904-9222395(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os06g37660.1	"OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed"	Medtr8g074360.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4495.3.S1_at	A	A1TS	POPTR_0012s07510	POPTR_0012s07510 (10)	scaffold_12:8425085-8425243(+) (10)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os06g37660.1	"OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed"	Medtr8g074360.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4497.1.S1_at	A	A2TS	POPTR_0002s06960	POPTR_0002s06960 (11)//POPTR_0005s21360 (11)	scaffold_2:4708187-4708504(-) (10)//scaffold_5:20463370-20463690(+) (11)	NA	P46276	"Fructose-1,6-bisphosphatase, cytosolic"	AT1G43670.1	Inositol monophosphatase family protein 	LOC_Os01g64660.2	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
Ptp.4498.1.S1_at	A	A1TS	POPTR_0002s07720	POPTR_0002s07720 (11)	scaffold_2:5296585-5296780(+) (11)	NA	Q5M990	Tetratricopeptide repeat protein 33	AT1G77230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g34830.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4499.1.S1_at	A	A1TS	POPTR_0001s37590	POPTR_0001s37590 (11)	scaffold_1:36561023-36561677(+) (11)	NA	NA	NA	AT5G55640.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g39820.1	expressed protein	Medtr5g103290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.45.1.A1_s_at	A	A1TS	POPTR_0001s20480	POPTR_0001s20480 (11)	scaffold_1:18428000-18428393(-) (11)	NA	P41381	Eukaryotic initiation factor 4A-8	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os06g48750.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g120800.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.450.1.A1_at	A	A1TS	POPTR_0004s08230	POPTR_0004s08230 (11)	scaffold_4:6736841-6737220(-) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT1G66150.1	transmembrane kinase 1 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr5g085220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.450.1.A1_s_at	A	A2TS	POPTR_0004s08230	POPTR_0004s08230 (11)//POPTR_0017s02480 (11)	scaffold_17:1787054-1787292(-) (11)//scaffold_4:6736933-6737174(-) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT1G66150.1	transmembrane kinase 1 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr5g085220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4500.1.S1_at	A	A1MS	POPTR_0011s12120	POPTR_0011s12120 (11)	scaffold_11:14903487-14903888(+) (11)	NA	Q9SEU6	"Thioredoxin M4, chloroplastic"	AT3G15360.1	thioredoxin M-type 4 	LOC_Os04g44830.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.4501.1.A1_at	A	A1TS	POPTR_0001s00470	POPTR_0001s00470 (11)	scaffold_1:360550-361081(-) (11)	NA	Q8VYK7	Autophagy-related protein 8f	AT4G16520.2	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4502.1.S1_at	A	A1TS	POPTR_0001s23760	POPTR_0001s23760 (11)	scaffold_1:23136681-23138149(-) (11)	NA	O80433	"Citrate synthase, mitochondrial"	AT2G44350.2	Citrate synthase family protein 	LOC_Os02g10070.2	"citrate synthase, putative, expressed"	Medtr5g099240.1	Citrate synthase 	GO:0044262|cellular carbohydrate metabolic process	"GO:0046912|""transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer"""	NA
Ptp.4505.1.S1_s_at	A	A1TS	POPTR_0015s08820	POPTR_0015s08820 (10)	scaffold_15:10171100-10171468(+) (10)	NA	Q9L5W4	50S ribosomal protein L7/L12	AT3G06040.3	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 	LOC_Os02g10540.1	"ribosomal protein L7/L12 C-terminal domain containing protein, expressed"	Medtr8g092690.1	"Ribosomal protein L7/12, oligomerisation; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4506.1.S1_s_at	A	A2TS	POPTR_0015s05990	POPTR_0015s06000 (11)//POPTR_0015s05990 (11)	scaffold_15:6295049-6295273(-) (11)//scaffold_15:6301969-6302193(-) (11)	NA	P17541	Acidic endochitinase	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr1g125760.1	"Glycoside hydrolase, chitinase active site "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4508.1.S1_at	A	A1TS	POPTR_0001s00720	POPTR_0001s00720 (9)	scaffold_1:597907-598473(-) (9)	NA	Q0V8M0	Protein KRI1 homolog	AT3G24080.2	KRR1 family protein 	LOC_Os05g41100.1	"protein kri1, putative, expressed"	Medtr2g129820.1	Krr1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4509.1.S1_at	A	A1TS	POPTR_0010s10250	POPTR_0010s10250 (9)	scaffold_10:10806668-10807259(-) (9)	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4509.1.S1_s_at	A	A1TS	POPTR_0010s10250	POPTR_0010s10250 (11)	scaffold_10:10806278-10806630(-) (11)	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4510.1.S1_at	A	A1TS	POPTR_0010s17320	POPTR_0010s17320 (10)	scaffold_10:15963879-15964257(-) (10)	NA	O95847	Mitochondrial uncoupling protein 4	AT1G14140.1	Mitochondrial substrate carrier family protein 	LOC_Os04g37630.1	"mitochondrial carrier protein, putative, expressed"	Medtr1g112070.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4511.1.S1_at	A	A1TS	POPTR_0004s21330	POPTR_0004s21330 (11)	scaffold_4:20497851-20498750(-) (11)	NA	P73456	Cell division protein ftsZ	AT2G36250.2	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
Ptp.4512.1.S1_x_at	A	A1TS	POPTR_0008s04010	POPTR_0008s04010 (11)	scaffold_8:2208849-2209145(+) (11)	NA	Q9SP55	V-type proton ATPase subunit G	AT3G01390.2	vacuolar membrane ATPase 10 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
Ptp.4513.1.S1_s_at	A	A1TS	POPTR_0006s11140	POPTR_0006s11140 (11)	scaffold_6:8454748-8456014(+) (11)	NA	Q9XG77	Proteasome subunit alpha type-6	AT2G05840.1	20S proteasome subunit PAA2 	LOC_Os03g08280.2	"peptidase, T1 family, putative, expressed"	Medtr2g071490.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4514.1.S1_s_at	A	A1TS	POPTR_0006s14580	POPTR_0006s14580 (11)	scaffold_5:9647755-9648194(-) (11)//scaffold_6:11917813-11918279(+) (11)	NA	NA	NA	AT2G28230.1	TATA-binding related factor (TRF) of subunit 20 of Mediator complex 	LOC_Os09g27140.2	expressed protein	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.4515.1.S1_at	A	A1TS	POPTR_0006s00530	POPTR_0006s00530 (11)	scaffold_6:273291-273652(-) (11)	NA	P49351	Farnesyl pyrophosphate synthase 1	AT5G47770.1	farnesyl diphosphate synthase 1 	LOC_Os01g50760.1	"polyprenyl synthetase, putative, expressed"	Medtr2g032930.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
Ptp.4515.1.S1_s_at	A	A1TS	POPTR_0006s00530	POPTR_0006s00530 (11)	scaffold_6:272759-273302(-) (11)	NA	P49351	Farnesyl pyrophosphate synthase 1	AT5G47770.1	farnesyl diphosphate synthase 1 	LOC_Os01g50760.1	"polyprenyl synthetase, putative, expressed"	Medtr2g032930.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
Ptp.4516.1.S1_s_at	A	A1TS	POPTR_0009s12780	POPTR_0009s12780 (11)	scaffold_9:10370253-10371035(-) (11)	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G21270.2	ubiquitin fusion degradation 1 	LOC_Os04g48770.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.4517.1.S1_s_at	A	A1TS	POPTR_0006s23290	POPTR_0006s23290 (11)	scaffold_6:22051717-22052227(+) (11)	NA	O76094	Signal recognition particle 72 kDa protein	AT1G67680.1	SRP72 RNA-binding domain 	LOC_Os01g66560.1	"signal recognition particle 72 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
Ptp.4518.1.S1_s_at	A	A1TS	POPTR_0007s12520	POPTR_0007s12520 (11)	scaffold_7:12812026-12812066(-) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os03g10140.1	"ZOS3-04 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.4519.1.S1_s_at	A	A1TS	POPTR_0008s01330	POPTR_0008s01330 (11)	scaffold_8:657401-657839(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.1	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.4520.1.S1_s_at	A	A1TS	POPTR_0323s00210	POPTR_0323s00210 (11)	scaffold_323:6229-6623(-) (11)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT5G61030.1	glycine-rich RNA-binding protein 3 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g105170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4521.1.S1_at	A	A1TS	POPTR_0018s11430	POPTR_0018s11430 (9)	scaffold_18:12167909-12168064(-) (9)	NA	NA	NA	AT5G57910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16930.1	expressed protein	Medtr8g145180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4522.1.S1_at	A	A1TS	POPTR_0014s15660	POPTR_0014s15660 (11)	scaffold_14:11675022-11675072(+) (11)	NA	Q8VYE5	"Glucan endo-1,3-beta-glucosidase 12"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4523.1.S1_at	A	A1TS	POPTR_0013s01710	POPTR_0013s01710 (9)	scaffold_13:967722-967948(-) (9)	NA	NA	NA	AT3G05545.1	RING/U-box superfamily protein 	LOC_Os05g06270.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4526.1.A1_s_at	A	A2TS	POPTR_0008s02430	POPTR_0008s02430 (11)//POPTR_0010s24290 (11)	scaffold_10:20577890-20579128(-) (11)//scaffold_8:1181465-1182731(+) (9)	NA	NA	NA	AT1G66240.1	homolog of anti-oxidant 1 	LOC_Os08g10480.1	heavy metal-associated domain containing protein	Medtr1g117110.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.4527.1.S1_s_at	A	A1TS	POPTR_0009s06660	POPTR_0009s06660 (11)	scaffold_9:6399979-6400406(+) (11)	NA	NA	NA	AT3G52105.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr8g037160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4528.1.S1_at	A	A1TS	POPTR_0003s21860	POPTR_0003s21860 (9)	scaffold_3:19851577-19853330(+) (9)	NA	NA	NA	AT5G19630.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g48590.1	expressed protein	Medtr4g141640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.453.1.A1_s_at	A	A1TS	POPTR_0006s22920	POPTR_0006s22920 (11)	scaffold_6:21783406-21783784(-) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G03870.1	Glutaredoxin family protein 	LOC_Os04g33680.1	"glutaredoxin, putative, expressed"	Medtr7g127470.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.4530.1.A1_at	A	A1TS	POPTR_0005s26700	POPTR_0005s26700 (11)	scaffold_5:24602411-24602452(-) (11)	POPTR_0002s01790 (6)	Q9SGS4	"Thioredoxin-like protein CDSP32, chloroplastic"	AT1G76080.1	chloroplastic drought-induced stress protein of 32 kD 	LOC_Os07g29410.1	"thioredoxin, putative, expressed"	Medtr1g032070.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.4531.1.S1_at	A	A1MS	POPTR_0013s02880	POPTR_0013s02880 (9)	scaffold_13:1740632-1742168(-) (10)	NA	Q94CI6	Sugar transporter ERD6-like 18	AT5G27360.1	Major facilitator superfamily protein 	LOC_Os03g24870.1	"transporter family protein, putative, expressed"	Medtr7g139770.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.4531.2.S1_s_at	A	A1TS	POPTR_0013s02880	POPTR_0013s02880 (11)	scaffold_13:1740786-1740832(-) (11)	NA	Q94CI6	Sugar transporter ERD6-like 18	AT5G27360.1	Major facilitator superfamily protein 	LOC_Os03g24870.1	"transporter family protein, putative, expressed"	Medtr7g139770.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.4532.1.S1_at	A	A1TS	POPTR_0002s08980	POPTR_0002s08980 (11)	scaffold_2:6350358-6350470(-) (11)	NA	Q9CXL1	Transmembrane protein 50A	AT1G36980.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os02g35880.1	"salt tolerant protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4533.1.S1_s_at	A	A1TS	POPTR_0011s02610	POPTR_0011s02610 (11)	scaffold_11:2516406-2516508(-) (11)	NA	P51373	Uncharacterized protein ycf23	NA	NA	LOC_Os05g49060.1	"uncharacterized protein ycf23, putative, expressed"	Medtr4g165580.1	Ribulose-phosphate binding barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4534.1.S1_at	A	A1TS	POPTR_0001s01490	POPTR_0001s01490 (11)	scaffold_1:1110420-1112168(+) (11)	NA	Q8GYX0	Mps one binder kinase activator-like 1	AT4G19045.1	Mob1/phocein family protein 	LOC_Os03g38020.1	"mps one binder kinase activator-like 1A, putative, expressed"	Medtr5g027360.1	Mob1/phocein 	NA	GO:0005515|protein binding	NA
Ptp.4536.1.S1_at	A	A1TS	POPTR_0002s09430	POPTR_0002s09430 (11)	scaffold_2:6723614-6724088(+) (11)	NA	C7G3A0	Metallophosphoesterase 1	NA	NA	LOC_Os06g11910.1	expressed protein	Medtr8g024590.1	hypothetical protein 	NA	GO:0016787|hydrolase activity	NA
Ptp.4537.1.S1_s_at	A	A1TS	POPTR_0006s28160	POPTR_0006s28160 (11)	scaffold_6:25954646-25955121(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4539.1.S1_at	A	A1TS	POPTR_0009s12900	POPTR_0009s12900 (11)	scaffold_9:10445914-10447452(-) (11)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.1	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr4g097630.1	YEATS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
Ptp.4539.2.S1_a_at	A	A1TS	POPTR_0009s12900	POPTR_0009s12900 (11)	scaffold_9:10448323-10449285(-) (11)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.1	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr4g097630.1	YEATS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
Ptp.4539.2.S1_at	A	A1MS	POPTR_0009s12900	POPTR_0009s12900 (11)	scaffold_9:10448004-10448123(-) (11)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.1	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr4g097630.1	YEATS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
Ptp.454.1.S1_at	A	A1TS	POPTR_0011s12040	POPTR_0011s12040 (10)	scaffold_11:14827450-14828850(+) (10)	NA	NA	NA	AT4G27500.1	proton pump interactor 1 	LOC_Os08g30060.2	"proton pump interactor, putative, expressed"	Medtr2g100530.1	"proton pump interactor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4540.2.S1_s_at	A	A1TS	POPTR_0016s00350	POPTR_0016s00350 (11)	scaffold_16:72147-72495(-) (11)	NA	P83326	Pectinesterase inhibitor	AT5G64620.1	cell wall / vacuolar inhibitor of fructosidase 2 	NA	NA	NA	NA	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.4543.1.A1_s_at	A	A2TS	POPTR_0004s01190	POPTR_0004s01190 (11)//POPTR_0004s01220 (10)	scaffold_4:646189-646505(-) (11)//scaffold_4:667632-667948(-) (11)	NA	P92980	"5'-adenylylsulfate reductase 3, chloroplastic"	AT4G21990.1	APS reductase 3 	LOC_Os07g32570.2	"OsAPRL1  adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed"	Medtr3g017000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4548.1.S1_s_at	A	A1TS	POPTR_0001s12440	POPTR_0001s12440 (11)	scaffold_1:9652896-9653250(+) (11)	NA	NA	NA	AT4G20300.2	Protein of unknown function (DUF1639) 	LOC_Os01g48830.2	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.455.1.A1_at	A	A1TS	POPTR_0004s00590	POPTR_0004s00590 (11)	scaffold_4:226402-226830(+) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G22150.1	plant UBX domain-containing protein 3 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4550.1.S1_at	A	A1TS	POPTR_0014s10260	POPTR_0014s10260 (11)	scaffold_14:7688582-7689012(+) (11)	NA	Q6R0H1	Protein LHY	AT1G01060.5	Homeodomain-like superfamily protein 	LOC_Os08g06110.5	"MYB family transcription factor, putative, expressed"	Medtr7g146200.1	"Ankyrin, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4553.1.S1_s_at	A	A1TS	POPTR_0018s02100	POPTR_0018s02100 (11)	scaffold_18:1871206-1871450(-) (11)	NA	Q6DJ03	Protein MEMO1	AT2G25280.1	"CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). "	LOC_Os08g20270.2	"MEMO1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4554.1.S1_s_at	A	A1TS	POPTR_0001s37650	POPTR_0001s37650 (11)	scaffold_1:36639859-36640302(+) (11)	NA	Q9FM65	Fasciclin-like arabinogalactan protein 1	AT5G55730.2	FASCICLIN-like arabinogalactan 1 	LOC_Os08g23180.1	"fasciclin-like arabinogalactan protein 8 precursor, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4555.1.S1_at	A	A1TS	POPTR_0008s06620	POPTR_0008s06620 (11)	scaffold_8:3959410-3959454(-) (11)	NA	O04204	60S acidic ribosomal protein P0-1	AT2G40010.1	Ribosomal protein L10 family protein 	LOC_Os08g03640.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr5g089540.1	Ribosomal protein L10; Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0042254|ribosome biogenesis||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4555.1.S1_s_at	A	A1TS	POPTR_0008s06620	POPTR_0008s06620 (11)	scaffold_8:3958094-3959120(-) (11)	NA	O04204	60S acidic ribosomal protein P0-1	AT2G40010.1	Ribosomal protein L10 family protein 	LOC_Os08g03640.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr5g089540.1	Ribosomal protein L10; Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0042254|ribosome biogenesis||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4556.1.S1_s_at	A	A1TS	POPTR_0016s04600	POPTR_0016s04600 (11)	scaffold_16:2707145-2708890(+) (11)	POPTR_0016s04700 (7)	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4557.1.S1_s_at	A	A1TS	POPTR_0014s06210	POPTR_0014s06210 (11)	scaffold_14:4730304-4730388(-) (11)	NA	O22152	Axial regulator YABBY 1	AT2G45190.1	Plant-specific transcription factor YABBY family protein 	LOC_Os04g45330.1	"YABBY domain containing protein, putative, expressed"	Medtr8g106280.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4559.1.S1_at	A	A1TS	POPTR_0002s22440	POPTR_0002s22440 (11)	scaffold_2:19173000-19173506(-) (11)	NA	Q8CFY5	"Protoheme IX farnesyltransferase, mitochondrial"	AT2G44520.1	cytochrome c oxidase 10 	LOC_Os01g34390.1	"prenyltransferase, putative, expressed"	Medtr1g146440.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
Ptp.4560.1.S1_s_at	A	A1TS	POPTR_0015s11410	POPTR_0015s11410 (11)	scaffold_15:11981217-11982317(-) (11)	NA	Q9XGY4	Mitochondrial import inner membrane translocase subunit Tim8	AT5G50810.1	translocase inner membrane subunit 8 	LOC_Os08g42380.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr3g151020.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
Ptp.4561.1.S1_s_at	A	A1TS	POPTR_0013s11970	POPTR_0013s11970 (11)	scaffold_13:12631390-12632977(-) (11)	NA	A1L1L3	Tyrosine-protein phosphatase non-receptor type 20	AT1G71860.3	protein tyrosine phosphatase 1 	LOC_Os12g07590.2	"Protein-tyrosine phosphatase domain containing protein, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0004725|protein tyrosine phosphatase activity	NA
Ptp.4562.1.S1_s_at	A	A1TS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13973364-13975134(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4563.1.S1_at	A	A1TS	POPTR_0009s12380	POPTR_0009s12380 (9)	scaffold_9:10120927-10122974(+) (9)	NA	NA	NA	AT4G39100.1	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os07g08880.2	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
Ptp.4564.1.A1_s_at	A	A1TS	POPTR_0010s26160	POPTR_0010s26160 (11)	scaffold_10:21484623-21487235(-) (11)	NA	Q94C60	Transcription elongation factor SPT4 homolog 2	AT5G63670.1	SPT4 homolog 2 	LOC_Os07g43060.2	"transcription elongation factor SPT4 homolog 1, putative, expressed"	Medtr3g122710.1	Transcription initiation Spt4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045941|positive regulation of transcription	GO:0008270|zinc ion binding||GO:0008159|positive transcription elongation factor activity	GO:0005634|nucleus
Ptp.4565.1.S1_at	A	A1MS	POPTR_0008s03290	POPTR_0008s03290 (10)	scaffold_8:1755533-1759430(-) (10)	NA	P49311	Glycine-rich RNA-binding protein GRP2A	AT5G04280.1	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 	LOC_Os07g08960.1	"RNA recognition motif containing protein, expressed"	Medtr2g008300.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.4567.1.S1_at	A	A1TS	POPTR_0001s18630	POPTR_0001s18630 (11)	scaffold_1:15685467-15686148(+) (11)	NA	P29102	"3-isopropylmalate dehydrogenase, chloroplastic"	AT1G80560.1	isopropylmalate dehydrogenase 2 	LOC_Os03g45320.1	"dehydrogenase, putative, expressed"	Medtr2g127240.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.4567.1.S1_s_at	A	A1TS	POPTR_0001s18630	POPTR_0001s18630 (11)	scaffold_1:15686167-15686401(+) (11)	NA	P29102	"3-isopropylmalate dehydrogenase, chloroplastic"	AT1G80560.1	isopropylmalate dehydrogenase 2 	LOC_Os03g45320.1	"dehydrogenase, putative, expressed"	Medtr2g127240.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.4568.1.A1_s_at	A	A1TS	POPTR_0019s11700	POPTR_0019s11700 (11)	scaffold_19:12947887-12948193(-) (11)	NA	Q5XH16	NHP2-like protein 1	AT4G12600.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os03g13800.1	"ribosomal protein L7Ae, putative, expressed"	Medtr8g119890.1	Ribosomal protein L7AE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4569.1.S1_at	A	A1TS	POPTR_0001s19120	POPTR_0001s19120 (11)	scaffold_1:16534950-16535082(+) (11)	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os01g53880.6	"OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.4571.1.S1_at	A	A1TS	POPTR_0003s08180	POPTR_0003s08180 (10)	scaffold_3:9587463-9590736(+) (10)	NA	NA	NA	AT4G17600.1	Chlorophyll A-B binding family protein 	LOC_Os02g03330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4572.1.S1_at	A	A1TS	POPTR_0005s00200	POPTR_0005s00200 (11)	scaffold_5:7340-8227(-) (11)	POPTR_0005s00240 (6)	Q8L7S8	"DEAD-box ATP-dependent RNA helicase 3, chloroplastic"	AT5G26742.2	DEAD box RNA helicase (RH3) 	LOC_Os03g61220.2	"DEAD-box ATP-dependent RNA helicase 3, putative, expressed"	Medtr7g134530.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.4573.1.S1_s_at	A	A1TS	POPTR_0007s01030	POPTR_0007s01030 (11)	scaffold_7:561668-563476(+) (11)	NA	Q9S7A9	Squamosa promoter-binding-like protein 4	AT1G53160.1	squamosa promoter binding protein-like 4 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr2g017680.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.4576.1.S1_at	A	A1TS	POPTR_0007s12090	POPTR_0007s12090 (11)	scaffold_7:12415298-12415821(+) (11)	NA	NA	NA	AT2G23690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g52940.1	expressed protein	Medtr5g018720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4577.1.S1_at	A	A1TS	POPTR_0016s08960	POPTR_0016s08960 (11)	scaffold_16:6746278-6746581(+) (11)	NA	Q9SF29	Syntaxin-71	AT3G09740.1	syntaxin of plants 71 	LOC_Os05g48020.1	"SNARE domain containing protein, putative, expressed"	Medtr1g078960.1	Syntaxin/epimorphin family 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4577.1.S1_s_at	A	A1TS	POPTR_0016s08960	POPTR_0016s08960 (9)	scaffold_16:6746567-6749577(+) (9)	NA	Q9SF29	Syntaxin-71	AT3G09740.1	syntaxin of plants 71 	LOC_Os05g48020.1	"SNARE domain containing protein, putative, expressed"	Medtr1g078960.1	Syntaxin/epimorphin family 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4578.1.S1_at	A	A1TS	POPTR_0006s13340	POPTR_0006s13340 (11)	scaffold_6:10550417-10552689(+) (11)	NA	Q3ZBN8	Mitochondrial import inner membrane translocase subunit TIM14	AT2G35795.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g09450.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4580.1.S1_at	A	A1TS	POPTR_0001s23270	POPTR_0001s23270 (11)	scaffold_1:22535671-22537379(+) (11)	NA	Q9FMN4	Thioredoxin-like protein Clot	AT5G42850.2	Thioredoxin superfamily protein 	LOC_Os06g21550.1	"thioredoxin domain-containing protein 17, putative, expressed"	Medtr3g031180.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4581.1.S1_s_at	A	A1TS	POPTR_0013s07440	POPTR_0013s07440 (11)	scaffold_13:6236266-6237497(-) (11)	NA	Q9ZSK1	"Tocopherol O-methyltransferase, chloroplastic"	AT1G64970.1	gamma-tocopherol methyltransferase 	LOC_Os02g47310.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr3g039530.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.4585.1.S1_at	A	A1TS	POPTR_0008s04700	POPTR_0008s04700 (11)	scaffold_8:2699069-2699927(+) (11)	NA	Q7SXR3	Macrophage erythroblast attacher	AT3G55070.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os05g06760.1	"macrophage erythroblast attacher, putative, expressed"	Medtr1g146370.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4587.1.S1_s_at	A	A2TS	POPTR_0001s41370	POPTR_0011s12300 (11)//POPTR_0001s41370 (11)	scaffold_1:40995942-40996252(-) (11)//scaffold_11:15041656-15041966(-) (11)	NA	Q41249	"Protochlorophyllide reductase, chloroplastic"	AT5G54190.1	protochlorophyllide oxidoreductase A 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	Medtr7g118280.1	"Retinol dehydrogenase 12, related "	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4587.1.S1_x_at	A	A1TS	POPTR_0001s41370	POPTR_0001s41370 (10)	scaffold_1:40995644-40996238(-) (10)	NA	Q41249	"Protochlorophyllide reductase, chloroplastic"	AT5G54190.1	protochlorophyllide oxidoreductase A 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	Medtr7g118280.1	"Retinol dehydrogenase 12, related "	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.459.1.S1_s_at	A	A1TS	POPTR_0010s20050	POPTR_0010s20050 (11)	scaffold_10:17804138-17804975(-) (11)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g089140.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4590.1.S1_s_at	A	A1TS	POPTR_0006s14800	POPTR_0006s14800 (11)	scaffold_6:12191252-12191778(-) (11)	NA	Q6P5M2	WD repeat-containing protein 61	AT4G29830.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os11g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4591.1.S1_at	A	A1TA	POPTR_0003s09090	POPTR_0003s09090 (10)	scaffold_3:10409037-10409265(+) (10)	NA	Q39204	Transcription factor MYC2	AT1G32640.1	Basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.4592.1.S1_at	A	A1TS	POPTR_0017s11710	POPTR_0017s11710 (11)	scaffold_17:11470981-11472374(+) (11)	NA	Q01105	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
Ptp.4592.1.S1_s_at	A	A1TS	POPTR_0017s11710	POPTR_0017s11710 (11)	scaffold_17:11472386-11474052(+) (11)	NA	Q01105	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
Ptp.4594.1.S1_at	A	A1TS	POPTR_0010s04700	POPTR_0010s04700 (11)	scaffold_10:5801861-5808453(-) (11)	POPTR_0010s04670 (6)	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4595.1.S1_at	A	A1TS	POPTR_0004s23720	POPTR_0004s23720 (11)	scaffold_4:22346405-22348001(+) (11)	NA	NA	NA	AT5G39600.1	"CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os02g18090.1	expressed protein	Medtr1g016220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4596.1.S1_at	A	A1TS	POPTR_0013s13910	POPTR_0013s13910 (9)	scaffold_13:14230828-14231181(-) (9)	NA	Q9SDT1	"Protochlorophyllide reductase, chloroplastic"	AT1G03630.1	protochlorophyllide oxidoreductase C 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4597.2.S1_s_at	A	A1TS	POPTR_0015s10630	POPTR_0015s10630 (11)	scaffold_15:11509106-11510653(+) (11)	NA	P93447	Elongation factor 1-delta	AT2G18110.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os07g42300.2	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.4598.1.S1_at	A	A1TS	POPTR_0009s04270	POPTR_0009s04270 (11)	scaffold_9:4726689-4726814(+) (11)	NA	P83941	Transcription elongation factor B polypeptide 1	AT5G59140.1	BTB/POZ domain-containing protein 	LOC_Os11g48030.1	"skp1 family, tetramerisation domain containing protein, expressed"	NA	NA	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.4598.1.S1_s_at	A	A1TS	POPTR_0009s04270	POPTR_0009s04270 (11)	scaffold_9:4724858-4726580(+) (11)	NA	P83941	Transcription elongation factor B polypeptide 1	AT5G59140.1	BTB/POZ domain-containing protein 	LOC_Os11g48030.1	"skp1 family, tetramerisation domain containing protein, expressed"	NA	NA	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.460.1.A1_at	A	A1TS	POPTR_0005s03690	POPTR_0005s03690 (9)	scaffold_5:2463512-2464109(+) (9)	NA	Q54TS4	Protein YIPF1 homolog	AT5G27490.1	Integral membrane Yip1 family protein 	LOC_Os01g42480.1	"Yip1 domain containing protein, expressed"	Medtr7g139390.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4603.1.S1_s_at	A	A1TS	POPTR_0013s13230	POPTR_0013s13230 (11)	scaffold_13:13781778-13782398(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g34140.2	expressed protein	Medtr4g128310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4604.1.S1_s_at	A	A1TS	POPTR_0001s24290	POPTR_0001s24290 (11)	scaffold_1:23620291-23620621(-) (11)	NA	P28186	Ras-related protein ARA-3	AT5G59840.1	Ras-related small GTP-binding family protein 	LOC_Os05g38630.2	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4605.1.S1_at	A	A1TS	POPTR_0012s13100	POPTR_0012s13100 (9)	scaffold_12:13398473-13400085(+) (9)	NA	P29144	Tripeptidyl-peptidase 2	AT4G20850.1	tripeptidyl peptidase ii 	LOC_Os02g44520.1	"OsSub19 - Putative Subtilisin homologue, expressed"	Medtr1g127030.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.4606.1.S1_at	A	A1TS	POPTR_0007s01010	POPTR_0007s01010 (10)	scaffold_7:549385-549789(-) (10)	NA	P31691	"ADP,ATP carrier protein, mitochondrial"	AT4G28390.1	ADP/ATP carrier 3 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4607.1.S1_s_at	A	A2TS	POPTR_0002s22620	POPTR_0002s22620 (11)//POPTR_0014s13680 (11)	scaffold_14:10026382-10026487(-) (11)//scaffold_2:19383504-19383609(-) (11)	NA	Q9LPV9	WD repeat-containing protein LWD1	AT1G12910.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g32430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g099620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4609.2.S1_a_at	A	A1TS	POPTR_0002s25850	POPTR_0002s25850 (11)	scaffold_2:22882235-22884198(-) (11)	NA	NA	NA	AT2G20390.1	unknown protein; Has 50 Blast hits to 50 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g51840.3	expressed protein	Medtr7g116910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.461.1.S1_x_at	A	A1TS	POPTR_0010s24930	POPTR_0010s24930 (11)	scaffold_10:20881303-20882057(+) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr4g066990.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.4610.1.S1_at	A	A1TS	POPTR_0004s06120	POPTR_0004s06120 (11)	scaffold_4:4860397-4861916(+) (11)	NA	A8LC45	50S ribosomal protein L24	AT5G23535.1	KOW domain-containing protein 	LOC_Os11g04370.1	"ribosomal protein L24, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4611.1.S1_at	A	A1TS	POPTR_0021s00800	POPTR_0021s00800 (11)	scaffold_21:466559-467454(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G21690.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr5g034130.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
Ptp.4612.1.S1_at	A	A1TS	POPTR_0010s08660	POPTR_0010s08660 (11)	scaffold_10:9551417-9551964(+) (11)	NA	Q53389	N-carbamoyl-L-amino acid hydrolase	AT5G43600.1	ureidoglycolate amidohydrolase 	LOC_Os12g40550.1	"peptidase, putative, expressed"	Medtr1g089890.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008237|metallopeptidase activity	NA
Ptp.4615.1.S1_at	A	A1TS	POPTR_0003s07130	POPTR_0003s07130 (11)	scaffold_3:8722340-8722376(-) (11)	NA	Q9C8M9	Protein STRUBBELIG-RECEPTOR FAMILY 6	AT1G53730.1	STRUBBELIG-receptor family 6 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4615.1.S1_s_at	A	A1TS	POPTR_0003s07130	POPTR_0003s07130 (11)	scaffold_3:8720748-8722140(-) (11)	NA	Q9C8M9	Protein STRUBBELIG-RECEPTOR FAMILY 6	AT1G53730.1	STRUBBELIG-receptor family 6 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4616.1.S1_at	A	A1TS	POPTR_0016s09280	POPTR_0016s09280 (11)	scaffold_16:7263751-7263787(-) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.4619.1.S1_at	A	A1TS	POPTR_0001s36700	POPTR_0001s36700 (11)	scaffold_1:35402010-35403112(+) (11)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.462.1.S1_at	A	A1TS	POPTR_0008s19600	POPTR_0008s19600 (9)	scaffold_8:13504032-13504306(-) (9)	NA	NA	NA	AT1G69980.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g38750.1	expressed protein	Medtr5g038130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4620.1.S1_a_at	A	A1TS	POPTR_0003s03090	POPTR_0003s03090 (11)	scaffold_3:3444192-3444341(-) (11)	NA	Q5RDY2	Transmembrane 9 superfamily member 4	AT3G13772.1	transmembrane nine 7 	LOC_Os06g37160.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr1g016840.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
Ptp.4620.1.S1_s_at	A	A1TS	POPTR_0003s03090	POPTR_0003s03090 (11)	scaffold_3:3444500-3444677(-) (11)	NA	Q5RDY2	Transmembrane 9 superfamily member 4	AT3G13772.1	transmembrane nine 7 	LOC_Os06g37160.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr1g016840.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
Ptp.4621.1.A1_a_at	A	A1TS	POPTR_0005s05450	POPTR_0005s05450 (11)	scaffold_5:3606669-3606983(-) (11)	NA	A2Z7B3	"GDP-mannose 3,5-epimerase 1"	AT5G28840.2	"GDP-D-mannose 3',5'-epimerase "	LOC_Os10g28200.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr7g140940.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4621.3.S1_s_at	A	A1TS	POPTR_0005s22130	POPTR_0005s22130 (11)	scaffold_5:21107470-21108979(+) (11)	NA	Q9M9G7	Probable F-actin-capping protein subunit beta	AT1G71790.1	Subunits of heterodimeric actin filament capping protein Capz superfamily 	LOC_Os03g26450.1	"F-actin-capping protein subunit beta, putative, expressed"	NA	NA	GO:0030036|actin cytoskeleton organization	GO:0003779|actin binding	GO:0005737|cytoplasm||GO:0008290|F-actin capping protein complex
Ptp.4622.1.S1_s_at	A	A1TS	POPTR_0010s26000	POPTR_0010s26000 (11)	scaffold_10:21390956-21391429(-) (11)	NA	P31405	V-type proton ATPase catalytic subunit A	AT1G78900.2	vacuolar ATP synthase subunit A 	LOC_Os06g45120.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.4623.1.S1_at	A	A1TS	POPTR_0002s03550	POPTR_0002s03550 (9)	scaffold_2:2213167-2213210(-) (9)	NA	Q54JC2	Uncharacterized protein DDB_G0288155	AT1G19580.1	gamma carbonic anhydrase 1 	LOC_Os12g07220.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
Ptp.4624.1.S1_at	A	A1TS	POPTR_0017s11290	POPTR_0017s11290 (11)	scaffold_17:11046207-11046491(-) (11)	NA	Q32RS0	Pyruvate dehydrogenase E1 component subunit beta	AT2G34590.1	Transketolase family protein 	LOC_Os12g42230.1	"transketolase, putative, expressed"	Medtr3g115120.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4626.1.S1_s_at	A	A1TS	POPTR_0002s25030	POPTR_0002s25030 (10)	scaffold_2:22236421-22237257(-) (10)	NA	Q11066	Uncharacterized HIT-like protein Rv1262c/MT1300	AT5G48545.1	histidine triad nucleotide-binding 3 	LOC_Os11g18990.1	"histidine triad family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4628.1.S1_s_at	A	A1TS	POPTR_0001s23950	POPTR_0001s23950 (11)	scaffold_1:23331178-23331636(-) (11)	NA	NA	NA	AT3G13510.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4629.1.S1_s_at	A	A1MS	POPTR_0001s08020	POPTR_0001s08020 (10)	scaffold_1:6080719-6081395(+) (11)	NA	Q9C5X3	SNARE-interacting protein KEULE	AT1G12360.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os02g25580.1	"Sec1 family transport protein, putative, expressed"	Medtr8g106730.1	Sec1-like protein 	GO:0006904|vesicle docking during exocytosis	NA	NA
Ptp.463.1.S1_at	A	A1TS	POPTR_0006s26130	POPTR_0006s26130 (9)	scaffold_6:24421480-24421879(+) (9)	NA	Q551A3	Leucine-rich repeat-containing protein DDB_G0276689	AT2G25730.2	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. 	LOC_Os01g40990.3	expressed protein	Medtr3g135820.1	Tetratricopeptide TPR2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4630.1.S1_at	A	A1TS	POPTR_0001s03880	POPTR_0001s03880 (10)	scaffold_1:3120553-3120836(+) (10)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os03g59760.2	"RING finger protein 126, putative, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4631.1.S1_s_at	A	A1TS	POPTR_0005s23610	POPTR_0005s23610 (11)	scaffold_5:22332345-22332449(+) (11)	POPTR_0002s04910 (8)	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4633.1.S1_at	A	A1TS	POPTR_0018s13340	POPTR_0018s13340 (11)	scaffold_18:13696907-13696971(-) (11)	NA	NA	NA	AT4G29850.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os02g07980.1	expressed protein	Medtr8g130380.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4635.1.S1_at	A	A1TS	POPTR_0007s06230	POPTR_0007s06230 (11)	scaffold_7:4392704-4394565(+) (11)	NA	NA	NA	AT4G39630.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g19370.1	expressed protein	Medtr6g025300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4637.1.S1_s_at	A	A1TS	POPTR_0012s11290	POPTR_0012s11290 (11)	scaffold_12:11793660-11794014(+) (11)	NA	P29402	Calnexin homolog 1	AT5G61790.1	calnexin 1 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr3g151490.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.4639.1.S1_at	A	A1TS	POPTR_0014s02280	POPTR_0014s02280 (9)	scaffold_14:1937193-1938327(+) (9)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os03g64030.1	"receptor protein kinase, putative, expressed"	Medtr1g023770.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4639.2.S1_s_at	A	A1TS	POPTR_0014s02280	POPTR_0014s02280 (11)	scaffold_14:1936991-1937200(+) (11)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os03g64030.1	"receptor protein kinase, putative, expressed"	Medtr1g023770.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.464.1.A1_at	A	A1TS	POPTR_0002s19060	POPTR_0002s19060 (9)	scaffold_2:14963991-14964533(-) (9)	NA	Q8S528	"Aldehyde dehydrogenase family 2 member B7, mitochondrial"	AT1G23800.1	aldehyde dehydrogenase 2B7 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4641.1.S1_at	A	A1TS	POPTR_0010s08450	POPTR_0010s08450 (11)	scaffold_10:9361284-9361584(-) (11)	NA	NA	NA	AT4G14440.1	3-hydroxyacyl-CoA dehydratase 1 	LOC_Os05g45300.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr2g015150.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4643.1.S1_at	A	A1TS	POPTR_0001s18420	POPTR_0001s18420 (11)	scaffold_1:15480327-15481453(-) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.4643.2.A1_s_at	A	A1TS	POPTR_0001s18420	POPTR_0001s18420 (11)	scaffold_1:15480078-15480143(-) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.4645.1.S1_at	A	A1TS	POPTR_0017s13550	POPTR_0017s13550 (11)	scaffold_17:13679697-13680141(+) (11)	NA	Q5T4S7	E3 ubiquitin-protein ligase UBR4	AT3G02260.1	auxin transport protein (BIG) 	LOC_Os09g07300.1	"BIG, putative, expressed"	Medtr7g015210.1	"Zinc finger, ZZ-type; Zinc finger, C2H2-type "	NA	GO:0004842|ubiquitin-protein ligase activity||GO:0008270|zinc ion binding	NA
Ptp.4645.1.S1_s_at	A	A1TS	POPTR_0017s13550	POPTR_0017s13550 (11)	scaffold_17:13679710-13680187(+) (11)	NA	Q5T4S7	E3 ubiquitin-protein ligase UBR4	AT3G02260.1	auxin transport protein (BIG) 	LOC_Os09g07300.1	"BIG, putative, expressed"	Medtr7g015210.1	"Zinc finger, ZZ-type; Zinc finger, C2H2-type "	NA	GO:0004842|ubiquitin-protein ligase activity||GO:0008270|zinc ion binding	NA
Ptp.4647.1.S1_at	A	A1TS	POPTR_0016s12760	POPTR_0016s12760 (11)	scaffold_16:12137973-12138701(+) (11)	NA	A2XFI3	Pyruvate decarboxylase isozyme 2	AT4G33070.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr3g166930.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
Ptp.4648.1.S1_s_at	A	A1TS	POPTR_0008s05560	POPTR_0008s05560 (11)	scaffold_8:3229964-3231405(+) (11)	NA	P30171	Actin-97	AT3G12110.1	actin-11 	LOC_Os03g50885.1	"actin, putative, expressed"	Medtr7g027010.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.4649.1.S1_s_at	A	A1TS	POPTR_0001s37520	POPTR_0001s37520 (11)	scaffold_1:36496823-36497301(+) (11)	NA	NA	NA	AT3G13130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). 	NA	NA	Medtr5g103200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4651.1.S1_s_at	A	A1TS	POPTR_0011s14150	POPTR_0011s14150 (11)	scaffold_11:16676217-16677188(+) (11)	NA	O13759	RNA-binding post-transcriptional regulator csx1	AT5G54900.1	RNA-binding protein 45A 	LOC_Os03g37270.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4652.1.S1_s_at	A	A1TS	POPTR_0001s35960	POPTR_0001s35960 (11)	scaffold_1:34420719-34420927(-) (11)	NA	O24554	Pectate lyase	AT3G27400.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4653.1.S1_at	A	A1TS	POPTR_0021s01090	POPTR_0021s01090 (9)	scaffold_21:659971-660974(-) (9)	NA	Q6DHV7	Adenosine deaminase-like protein	AT4G04880.1	adenosine/AMP deaminase family protein 	LOC_Os07g46630.1	"AMP deaminase, putative, expressed"	Medtr8g146450.1	Adenosine/AMP deaminase 	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
Ptp.4654.1.S1_at	A	A1TS	POPTR_0001s29370	POPTR_0001s29370 (11)	scaffold_1:28073869-28074616(-) (11)	NA	Q9LXC9	"Soluble inorganic pyrophosphatase 1, chloroplastic"	AT5G09650.1	pyrophosphorylase 6 	LOC_Os02g52940.2	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr2g010460.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.4655.1.S1_at	A	A1TS	POPTR_0013s01950	POPTR_0013s01950 (11)	scaffold_13:1125069-1126605(-) (11)	POPTR_0005s02700 (6)	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT3G05420.2	acyl-CoA binding protein 4 	LOC_Os03g61930.1	"ACBP4, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	NA	GO:0000062|acyl-CoA binding	NA
Ptp.4656.1.S1_s_at	A	A1TS	POPTR_0011s12710	POPTR_0011s12710 (11)	scaffold_11:15407243-15407459(+) (11)	NA	NA	NA	AT5G54240.1	Protein of unknown function (DUF1223) 	LOC_Os07g37310.1	"uncharacterized secreted protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4660.1.S1_at	A	A1TS	POPTR_0008s19430	POPTR_0008s19430 (11)	scaffold_8:13381593-13382086(+) (11)	NA	P92990	Probable polygalacturonase non-catalytic subunit JP650	AT1G70370.2	polygalacturonase 2 	LOC_Os08g29200.1	"BURP domain containing protein, expressed"	Medtr5g035640.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4661.1.S1_s_at	A	A1TS	POPTR_0011s03570	POPTR_0011s03570 (11)	scaffold_11:3634026-3634593(-) (11)	NA	B9M4V3	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.4662.1.S1_s_at	A	A1TS	POPTR_0014s15450	POPTR_0014s15450 (11)	scaffold_14:11506560-11507393(-) (11)	NA	Q55BK0	Ubiquitin fusion degradation protein 1 homolog	AT4G15420.1	Ubiquitin fusion degradation UFD1 family protein 	LOC_Os01g35040.1	"ZOS1-09 - C2H2 zinc finger protein, expressed"	Medtr5g093620.1	"Ubiquitin fusion degradation protein UFD1; Zinc finger, C2H2-type; Peptidase, archaeal and bacterial C-terminal "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.4665.1.A1_s_at	A	A1TS	POPTR_0005s20380	POPTR_0005s20380 (11)	scaffold_5:19430205-19430265(+) (11)	NA	Q9C6Y3	Cyclin-A1-1	AT1G44110.1	Cyclin A1;1 	LOC_Os01g13260.1	"cyclin-A1, putative, expressed"	Medtr4g144920.1	Cyclin-like; ; 	NA	NA	GO:0005634|nucleus
Ptp.4666.1.S1_s_at	A	A1TS	POPTR_0001s37260	POPTR_0001s37260 (11)	scaffold_1:36227527-36227869(+) (11)	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.4667.1.S1_s_at	A	A1TS	POPTR_0001s13510	POPTR_0001s13510 (11)	scaffold_1:10586985-10587846(-) (11)	POPTR_0003s16650 (6)	Q43793	"Glucose-6-phosphate 1-dehydrogenase, chloroplastic"	AT5G13110.1	glucose-6-phosphate dehydrogenase 2 	LOC_Os07g22350.1	"glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed"	Medtr7g022440.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
Ptp.4668.1.S1_at	A	A1TS	POPTR_0005s09970	POPTR_0005s09970 (11)	scaffold_5:7076198-7077092(+) (11)	NA	Q6DRN3	Nucleolar complex protein 3 homolog	AT1G79150.1	binding 	LOC_Os06g30320.1	"NOC3 - Putative nucleolar complex subunit 3, expressed"	Medtr7g076380.1	CBF; Nucleolar complex-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.467.1.S1_at	A	A1TS	POPTR_0008s01910	POPTR_0008s01910 (9)	scaffold_8:912322-912805(-) (9)	NA	NA	NA	AT3G10630.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os09g12530.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr1g112250.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.4670.1.S1_s_at	A	A1TS	POPTR_0008s10480	POPTR_0008s10480 (11)	scaffold_8:6567316-6567494(-) (11)	NA	Q54YA0	Probable ATP-citrate synthase	AT3G06650.1	ATP-citrate lyase B-1 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4672.1.S1_at	A	A1TS	POPTR_0002s10600	POPTR_0002s10600 (10)	scaffold_2:7689663-7690460(+) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT4G24530.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr3g149400.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4674.1.S1_at	A	A1TS	POPTR_0014s06740	POPTR_0014s06740 (11)	scaffold_14:5097858-5098384(-) (11)	NA	Q9LZX4	Fasciclin-like arabinogalactan protein 10	AT3G60900.1	FASCICLIN-like arabinogalactan-protein 10 	LOC_Os04g48490.1	"fasciclin-like arabinogalactan protein, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4674.1.S1_x_at	A	A1TS	POPTR_0014s06740	POPTR_0014s06740 (11)	scaffold_14:5097858-5098384(-) (11)	NA	Q9LZX4	Fasciclin-like arabinogalactan protein 10	AT3G60900.1	FASCICLIN-like arabinogalactan-protein 10 	LOC_Os04g48490.1	"fasciclin-like arabinogalactan protein, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4675.1.S1_s_at	A	A1TS	POPTR_0006s03180	POPTR_0006s03180 (11)	scaffold_6:2004466-2004709(-) (11)	NA	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4676.1.S1_s_at	A	A1TS	POPTR_0010s11840	POPTR_0010s11840 (11)	scaffold_10:11977617-11977966(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4676.2.A1_s_at	A	A1TS	POPTR_0010s11840	POPTR_0010s11840 (11)	scaffold_10:11977645-11979177(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4677.1.S1_at	A	A2TS	POPTR_0016s05880	POPTR_0016s05880 (11)//POPTR_0149s00210 (9)	scaffold_149:20349-20469(+) (9)//scaffold_16:3819830-3820107(+) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os01g61420.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4678.1.S1_at	A	A1TS	POPTR_0007s13960	POPTR_0007s13960 (11)	scaffold_7:13941926-13942324(-) (11)	NA	P93031	"GDP-mannose 4,6 dehydratase 2"	AT3G51160.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g04620.1	"GDP-mannose 4,6 dehydratase 2, putative, expressed"	Medtr5g021700.1	"NAD-dependent epimerase/dehydratase; Short-chain dehydrogenase/reductase SDR; GDP-mannose 4,6-dehydratase "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4679.1.A1_s_at	A	A1TS	POPTR_0017s14470	POPTR_0017s14470 (11)	scaffold_17:14506441-14507292(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
Ptp.4680.1.S1_at	A	A1TS	POPTR_0013s04010	POPTR_0013s04010 (11)	scaffold_13:2628365-2628417(-) (11)	NA	NA	NA	AT1G54460.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4682.1.S1_a_at	A	A1TS	POPTR_0002s10490	POPTR_0002s10490 (11)	scaffold_2:7571089-7572274(-) (11)	NA	NA	NA	AT1G09740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g52314.1	"BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed"	Medtr5g075020.3	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
Ptp.4682.1.S1_at	A	A1TS	POPTR_0002s10490	POPTR_0002s10490 (10)	scaffold_2:7570918-7571049(-) (10)	NA	NA	NA	AT1G09740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g52314.1	"BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed"	Medtr5g075020.3	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
Ptp.4684.1.S1_s_at	A	A2TS	POPTR_0009s07150	POPTR_0009s07150 (11)//POPTR_1455s00200 (9)	scaffold_1455:8-92(-) (9)//scaffold_9:6758696-6758790(+) (11)	NA	Q43594	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.4685.1.S1_at	A	A1TS	POPTR_0005s25750	POPTR_0005s25750 (10)	scaffold_5:23954679-23955064(+) (10)	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4687.1.S1_at	A	A1TS	POPTR_0013s01360	POPTR_0013s01360 (10)	scaffold_13:757725-758293(-) (10)	POPTR_0005s02160 (6)	Q84JM4	Topless-related protein 3	AT5G27030.1	TOPLESS-related 3 	LOC_Os01g15020.1	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr1g100210.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4688.1.S1_s_at	A	A1TS	POPTR_0003s06930	POPTR_0003s06930 (11)	scaffold_3:8491072-8492600(-) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.4689.1.S1_at	A	A1TA	POPTR_0022s00320	POPTR_0022s00320 (10)	scaffold_22:68342-68872(-) (10)	NA	NA	NA	AT1G09610.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4690.1.S1_at	A	A1TS	POPTR_0012s01120	POPTR_0012s01120 (11)	scaffold_12:775754-776026(-) (11)	POPTR_0015s05960 (7)	Q38953	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G26560.1	"ATP-dependent RNA helicase, putative "	LOC_Os02g19860.1	"pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed"	Medtr1g143710.1	"Helicase, C-terminal; ATP-dependent helicase HrpB; Nucleic acid-binding, OB-fold, subgroup; "	NA	GO:0003723|RNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.4692.1.S1_at	A	A1MS	POPTR_0013s15600	POPTR_0013s15600 (9)	scaffold_13:15535753-15535823(+) (9)	NA	Q5M7Z0	RING finger and transmembrane domain-containing protein 1	AT5G01960.1	RING/U-box superfamily protein 	LOC_Os01g07390.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr7g080680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4692.1.S1_s_at	A	A1TS	POPTR_0013s15600	POPTR_0013s15600 (11)	scaffold_13:15535973-15536186(+) (11)	NA	Q5M7Z0	RING finger and transmembrane domain-containing protein 1	AT5G01960.1	RING/U-box superfamily protein 	LOC_Os01g07390.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr7g080680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4693.1.S1_s_at	A	A1TS	POPTR_0016s05600	POPTR_0016s05600 (11)	scaffold_16:3527119-3527585(-) (11)	POPTR_0006s04950 (7)	NA	NA	AT2G41770.1	Protein of unknown function (DUF288) 	LOC_Os05g32500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4697.1.A1_a_at	A	A1MS	POPTR_0007s04640	POPTR_0007s04640 (11)	scaffold_7:2875238-2875573(-) (11)	NA	NA	NA	AT5G27820.1	Ribosomal L18p/L5e family protein 	LOC_Os03g48840.3	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr1g143500.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4697.2.A1_a_at	A	A1MS	POPTR_0007s04640	POPTR_0007s04640 (11)	scaffold_7:2875229-2875573(-) (11)	NA	NA	NA	AT5G27820.1	Ribosomal L18p/L5e family protein 	LOC_Os03g48840.3	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr1g143500.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4698.1.S1_at	A	A1TS	POPTR_0017s10480	POPTR_0017s10480 (11)	scaffold_17:9913241-9914291(+) (11)	NA	Q54GI9	"Prohibitin-1, mitochondrial"	AT5G40770.1	prohibitin 3 	LOC_Os02g37000.1	"mitochondrial prohibitin complex protein 1, putative, expressed"	Medtr3g009610.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.47.1.A1_at	A	A1TS	POPTR_0006s21010	POPTR_0006s21010 (11)	scaffold_6:20126010-20127413(+) (11)	NA	Q9FDZ9	60S ribosomal protein L21-2	AT1G57860.1	Translation protein SH3-like family protein 	LOC_Os10g32820.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4700.1.S1_s_at	A	A1TS	POPTR_0007s01850	POPTR_0007s01850 (11)	scaffold_7:1068711-1068817(-) (11)	NA	Q42896	Fructokinase-2	AT2G31390.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g66940.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4703.1.S1_at	A	A1TS	POPTR_0009s01490	POPTR_0009s01490 (10)	scaffold_9:1860723-1861386(+) (10)	NA	NA	NA	AT5G60720.1	"Protein of unknown function, DUF547 "	LOC_Os03g64230.1	expressed protein	Medtr5g087330.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4705.1.S1_at	A	A1TS	POPTR_0002s21280	POPTR_0002s21280 (11)	scaffold_2:17682640-17683126(+) (11)	NA	A8MRC7	"Probable beta-1,3-galactosyltransferase 2"	AT1G05170.1	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
Ptp.4706.1.S1_s_at	A	A1TS	POPTR_0017s12760	POPTR_0017s12760 (11)	scaffold_17:12926703-12927135(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT3G29360.2	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25690.1	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.4707.2.A1_a_at	A	A1TS	POPTR_0005s01380	POPTR_0005s01380 (11)	scaffold_5:919520-921395(+) (11)	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os01g22870.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
Ptp.4708.1.S1_s_at	A	A1TS	POPTR_0014s01060	POPTR_0014s01060 (11)	scaffold_14:992295-993105(-) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT2G22620.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127450.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.471.1.S1_s_at	A	A1TS	POPTR_0008s09480	POPTR_0008s09480 (11)	scaffold_8:5875805-5877044(+) (11)	NA	Q93V72	"Glucan endo-1,3-beta-glucosidase-like protein At1g69295"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4710.1.S1_s_at	A	A1TS	POPTR_0009s11170	POPTR_0009s11170 (11)	scaffold_9:9376169-9376743(+) (11)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	NA	NA	Medtr4g092810.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
Ptp.4711.1.S1_s_at	A	A4TS	POPTR_0004s11250	POPTR_0017s13510 (11)//POPTR_0004s11250 (11)//POPTR_0004s11260 (11)//POPTR_0017s13530 (11)	scaffold_17:13637761-13637799(+) (11)//scaffold_17:13640759-13640797(+) (11)//scaffold_17:13649956-13649994(+) (11)//scaffold_4:9872555-9872593(-) (11)//scaffold_4:9883750-9883788(-) (11)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4712.1.S1_at	A	A1MS	POPTR_0015s12840	POPTR_0015s12840 (11)	scaffold_15:13043040-13043545(+) (11)	POPTR_0013s11380 (7)	Q42538	Serine acetyltransferase 5	AT5G56760.1	serine acetyltransferase 1;1 	LOC_Os05g45710.1	"serine acetyltransferase protein, putative, expressed"	Medtr4g125940.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
Ptp.4714.1.S1_s_at	A	A1TS	POPTR_0008s13140	POPTR_0008s13140 (11)	scaffold_8:8586547-8586902(+) (11)	NA	Q8LBH2	Putative clathrin assembly protein At2g01600	AT2G01600.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr8g129660.1	"Carbamoyl-phosphate synthase L chain, ATP-binding; ENTH/VHS; ANTH; "	NA	GO:0005543|phospholipid binding	NA
Ptp.4715.1.A1_a_at	A	A1TS	POPTR_0018s09690	POPTR_0018s09690 (11)	scaffold_18:10705473-10705883(+) (11)	NA	O65570	Villin-4	AT4G30160.1	villin 4 	LOC_Os06g44890.1	"villin protein, putative, expressed"	Medtr2g041680.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.4715.2.S1_s_at	A	A1TS	POPTR_0018s09690	POPTR_0018s09690 (10)	scaffold_18:10705741-10706119(+) (10)	NA	O65570	Villin-4	AT4G30160.1	villin 4 	LOC_Os06g44890.1	"villin protein, putative, expressed"	Medtr2g041680.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.4717.1.S1_at	A	A1TS	POPTR_0019s12550	POPTR_0019s12550 (11)	scaffold_19:13603321-13603880(+) (11)	POPTR_0013s13090 (8)	Q8LPG9	Protein IQ-DOMAIN 14	AT3G59690.1	IQ-domain 13 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4718.1.S1_s_at	A	A1TS	POPTR_0005s18080	POPTR_0005s18080 (11)	scaffold_5:16116042-16116673(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0007050|cell cycle arrest	GO:0004861|cyclin-dependent protein kinase inhibitor activity	GO:0005634|nucleus
Ptp.472.1.A1_at	A	A1TS	POPTR_0005s27500	POPTR_0005s27500 (9)	scaffold_5:25133958-25135686(+) (9)	NA	Q2L6L1	Protein canopy-1	AT1G42480.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852); Has 177 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g02524.1	"canopy homolog 2 precursor, putative, expressed"	Medtr3g160110.1	"Protein canopy homolog 2 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4721.1.S1_at	A	A1TS	POPTR_0007s12340	POPTR_0007s12340 (11)	scaffold_7:12662277-12662744(-) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
Ptp.4722.1.S1_s_at	A	A1TS	POPTR_0014s15770	POPTR_0014s15770 (11)	scaffold_14:11836342-11836677(+) (11)	NA	Q94AD9	Zinc finger CCCH domain-containing protein 3	AT1G04990.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g092550.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.4723.1.S1_s_at	A	A1TS	POPTR_0010s11950	POPTR_0010s11950 (11)	scaffold_10:12078878-12079273(+) (11)	NA	P17407	21 kDa protein	AT1G14890.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr8g138370.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.4724.1.S1_at	A	A1TS	POPTR_0018s07200	POPTR_0018s07200 (10)	scaffold_18:7394895-7400971(-) (11)	NA	NA	NA	AT5G20520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41730.1	"OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4725.1.S1_s_at	A	A1TS	POPTR_0025s00560	POPTR_0025s00560 (11)	scaffold_25:253192-253232(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.4728.1.S1_at	A	A1TS	POPTR_0001s17420	POPTR_0001s17420 (10)	scaffold_1:14211093-14211513(+) (11)	NA	NA	NA	AT1G52720.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g07970.1	expressed protein	Medtr8g119350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4729.1.S1_at	A	A1TS	POPTR_0017s03490	POPTR_0017s03490 (11)	scaffold_17:2528869-2529526(-) (11)	NA	NA	NA	AT1G73390.3	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os02g58160.2	expressed protein	Medtr6g088880.1	BRO1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4730.1.A1_s_at	A	A1TS	POPTR_0016s09230	POPTR_0016s09230 (9)	scaffold_16:7226681-7227190(+) (9)	NA	P45730	Phenylalanine ammonia-lyase	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os04g43800.1	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
Ptp.4731.1.A1_s_at	A	A1TS	POPTR_0001s12580	POPTR_0001s12580 (11)	scaffold_1:9750356-9750619(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4732.1.S1_s_at	A	A1TS	POPTR_0014s10950	POPTR_0014s10950 (11)	scaffold_14:8167635-8168797(-) (11)	NA	Q41328	Pto-interacting protein 1	AT3G62220.1	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4733.1.S1_at	A	A1TS	POPTR_0005s07500	POPTR_0005s07500 (10)	scaffold_5:5118400-5118661(+) (10)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr3g111140.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4734.1.S1_at	A	A1TS	POPTR_0007s10720	POPTR_0007s10720 (9)	scaffold_7:10761504-10763513(+) (9)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G67200.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4735.1.S1_at	A	A1TS	POPTR_0015s08900	POPTR_0015s08900 (11)	scaffold_15:10257887-10258116(-) (11)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.4736.1.S1_s_at	A	A1TS	POPTR_0016s05650	POPTR_0016s05650 (11)	scaffold_16:3577326-3578173(+) (11)	NA	O81644	Villin-2	AT2G41740.1	villin 2 	LOC_Os03g24220.2	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.4737.1.A1_at	A	A1TS	POPTR_0011s16950	POPTR_0011s16950 (11)	scaffold_11:18656252-18656520(+) (11)	NA	Q7KZN9	Cytochrome c oxidase assembly protein COX15 homolog	AT5G56090.1	cytochrome c oxidase 15 	LOC_Os08g38720.1	"cytochrome c oxidase assembly protein COX15, putative, expressed"	Medtr5g104460.1	Cytochrome oxidase assembly 	GO:0006461|protein complex assembly	NA	GO:0016020|membrane
Ptp.4737.1.A1_s_at	A	A1TS	POPTR_0011s16950	POPTR_0011s16950 (11)	scaffold_11:18655915-18656425(+) (11)	NA	Q7KZN9	Cytochrome c oxidase assembly protein COX15 homolog	AT5G56090.1	cytochrome c oxidase 15 	LOC_Os08g38720.1	"cytochrome c oxidase assembly protein COX15, putative, expressed"	Medtr5g104460.1	Cytochrome oxidase assembly 	GO:0006461|protein complex assembly	NA	GO:0016020|membrane
Ptp.4739.1.S1_s_at	A	A1TS	POPTR_0013s09270	POPTR_0013s09270 (11)	scaffold_13:8919217-8920730(+) (11)	NA	P35017	"Superoxide dismutase [Mn], mitochondrial"	AT3G10920.1	manganese superoxide dismutase 1 	LOC_Os05g25850.1	"superoxide dismutase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
Ptp.474.1.A1_at	A	A1TS	POPTR_0005s27150	POPTR_0005s27150 (11)	scaffold_5:24935946-24935980(-) (11)	NA	Q5XGY1	Pre-rRNA-processing protein TSR1 homolog	AT1G42440.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). "	LOC_Os11g19250.1	"AARP2CN domain containing protein, expressed"	Medtr4g092630.2	AARP2CN 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
Ptp.474.1.A1_s_at	A	A1TS	POPTR_0005s27150	POPTR_0005s27150 (11)	scaffold_5:24935719-24936468(-) (11)	NA	Q5XGY1	Pre-rRNA-processing protein TSR1 homolog	AT1G42440.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). "	LOC_Os11g19250.1	"AARP2CN domain containing protein, expressed"	Medtr4g092630.2	AARP2CN 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
Ptp.4740.1.S1_at	A	A1TS	POPTR_0002s03540	POPTR_0002s03540 (11)	scaffold_2:2202704-2202911(-) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4740.1.S1_s_at	A	A2TS	POPTR_0002s03540	POPTR_0005s25070 (11)//POPTR_0002s03540 (11)	scaffold_2:2202779-2203370(-) (11)//scaffold_5:23417875-23418479(+) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4742.2.S1_a_at	A	A1TS	POPTR_0019s04700	POPTR_0019s04700 (11)	scaffold_19:4897494-4899654(+) (11)	NA	NA	NA	AT2G39050.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os07g48500.1	"stress responsive protein, putative, expressed"	Medtr7g100110.1	"glycoamidase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4743.1.S1_at	A	A1TS	POPTR_0013s03250	POPTR_0013s03250 (10)	scaffold_13:1991256-1991771(-) (10)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G54610.3	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr7g140180.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4744.1.A1_at	A	A1TS	POPTR_0016s06300	POPTR_0016s06300 (9)	scaffold_16:4233018-4234196(+) (9)	NA	P34789	40S ribosomal protein S28-2	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4744.1.A1_x_at	A	A1TS	POPTR_0016s06300	POPTR_0016s06300 (10)	scaffold_16:4233018-4234195(+) (10)	NA	P34789	40S ribosomal protein S28-2	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4747.1.A1_s_at	A	A1TS	POPTR_0004s16120	POPTR_0004s16120 (11)	scaffold_4:16556339-16557248(-) (11)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr3g159470.2	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4747.1.A1_x_at	A	A1TS	POPTR_0004s16120	POPTR_0004s16120 (10)	scaffold_4:16556249-16557246(-) (11)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr3g159470.2	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.475.1.S1_s_at	A	A1TS	POPTR_0005s02070	POPTR_0005s02070 (11)	scaffold_5:1338229-1338480(-) (11)	NA	Q9SUJ1	Syntaxin-43	AT5G26980.2	syntaxin of plants 41 	LOC_Os06g02570.1	"syntaxin, putative, expressed"	Medtr1g100300.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
Ptp.4751.1.S1_at	A	A1TS	POPTR_0012s07110	POPTR_0012s07110 (11)	scaffold_12:7805474-7805616(+) (11)	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os02g51290.1	"HVA22, putative, expressed"	Medtr8g112530.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4752.1.S1_at	A	A1TS	POPTR_0004s08460	POPTR_0004s08460 (11)	scaffold_4:6998229-6999778(-) (11)	NA	Q6NZW8	ADP-ribosylation factor-like protein 8B-A	AT5G37680.1	ADP-ribosylation factor-like A1A 	LOC_Os02g49980.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g085850.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4753.1.S1_at	A	A1TS	POPTR_0013s05620	POPTR_0013s05620 (11)	scaffold_13:4018343-4018463(-) (11)	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT1G64760.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g57880.3	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr6g030630.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4754.1.S1_at	A	A1TS	POPTR_0001s08860	POPTR_0001s08860 (9)	scaffold_1:6766471-6766884(-) (9)	NA	Q9FXW4	Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT1G33720.1	"cytochrome P450, family 76, subfamily C, polypeptide 6 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4755.1.S1_at	A	A1TS	POPTR_0006s06440	POPTR_0006s06440 (9)	scaffold_6:4597691-4597934(-) (9)	NA	Q08CL8	CCR4-NOT transcription complex subunit 10	AT5G35430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g03600.1	"immunoglobulin/major histocompatibility complex, putative, expressed"	Medtr8g121410.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4757.1.S1_s_at	A	A1TS	POPTR_0003s17920	POPTR_0003s17920 (11)	scaffold_3:17160908-17161741(+) (11)	NA	Q9LMP7	Golgi SNARE 11 protein	AT1G15880.1	golgi snare 11 	LOC_Os08g34140.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr4g022490.1	Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4758.1.S1_at	A	A1TS	POPTR_0008s12030	POPTR_0008s12030 (11)	scaffold_8:7760703-7761070(-) (11)	NA	NA	NA	AT1G25420.3	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os01g49350.1	"DUF292 domain containing protein, expressed"	Medtr1g140920.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4758.2.A1_a_at	A	A1TS	POPTR_0008s12030	POPTR_0008s12030 (11)	scaffold_8:7761090-7761296(-) (11)	NA	NA	NA	AT1G25420.3	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os01g49350.1	"DUF292 domain containing protein, expressed"	Medtr1g140920.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4758.2.A1_at	A	A1TA	POPTR_0008s12030	POPTR_0008s12030 (10)	scaffold_8:7760740-7761036(+) (10)	NA	NA	NA	AT1G25420.3	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os01g49350.1	"DUF292 domain containing protein, expressed"	Medtr1g140920.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4759.1.S1_at	A	A1TS	POPTR_0008s18090	POPTR_0008s18090 (11)	scaffold_8:12117738-12121810(+) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT3G27320.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g67600.1	"CXE carboxylesterase, putative, expressed"	Medtr6g071010.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.476.1.S1_at	A	A1TS	POPTR_0001s27110	POPTR_0001s27110 (11)	scaffold_1:26052364-26052710(-) (11)	NA	NA	NA	AT3G08030.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.476.1.S1_s_at	A	A1TS	POPTR_0001s27110	POPTR_0001s27110 (11)	scaffold_1:26052197-26052637(-) (11)	NA	NA	NA	AT3G08030.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4760.1.S1_s_at	A	A1TS	POPTR_0008s09430	POPTR_0008s09430 (11)	scaffold_8:5841306-5841922(-) (11)	NA	Q7Z494	Nephrocystin-3	AT3G27960.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g125600.1	"kinesin light chain-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4762.1.S1_at	A	A1TS	POPTR_0018s04060	POPTR_0018s04060 (11)	scaffold_18:3476514-3478000(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os08g40880.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g133100.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4763.1.S1_at	A	A1TS	POPTR_0001s34070	POPTR_0001s34070 (9)	scaffold_1:32212747-32213703(+) (9)	NA	Q8HSW1	"Adenylate kinase, chloroplastic"	AT3G01820.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g02540.1	"adenylate kinase, putative, expressed"	Medtr7g120720.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0019205|""nucleobase, nucleoside, nucleotide kinase activity""||GO:0005524|ATP binding"	NA
Ptp.4765.1.S1_at	A	A1TS	POPTR_0001s39020	POPTR_0001s39020 (11)	scaffold_1:38268331-38268597(+) (11)	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4765.1.S1_s_at	A	A1TS	POPTR_0001s39020	POPTR_0001s39020 (11)	scaffold_1:38268589-38269501(+) (11)	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4766.1.S1_at	A	A1TS	POPTR_0016s06420	POPTR_0016s06420 (11)	scaffold_16:4316303-4317649(-) (11)	NA	NA	NA	AT5G06590.1	unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g42840.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4767.1.S1_at	A	A1TS	POPTR_0001s23520	POPTR_0001s23520 (11)	scaffold_1:22914366-22914960(+) (11)	NA	Q86HW6	Probable serine/threonine-protein kinase DDB_G0276461	AT2G32850.2	Protein kinase superfamily protein 	LOC_Os02g37880.3	"cyclin G-associated kinase, putative, expressed"	Medtr8g115300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4768.1.S1_s_at	A	A1TS	POPTR_0011s07200	POPTR_0011s07200 (11)	scaffold_11:7963182-7964461(-) (11)	NA	C0LGK9	Probable LRR receptor-like serine/threonine-protein kinase At2g24230	AT5G45800.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g14480.1	"receptor-like kinase, putative, expressed"	Medtr4g134880.1	Tyrosine protein kinase; Ribosomal protein S2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4769.1.S1_at	A	A1TS	POPTR_0006s11650	POPTR_0006s11650 (11)	scaffold_6:8865818-8866928(-) (11)	NA	NA	NA	AT3G09980.1	Family of unknown function (DUF662)  	LOC_Os04g33450.2	expressed protein	Medtr7g126780.2	Protein of unknown function DUF662 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4769.1.S1_x_at	A	A1TS	POPTR_0006s11650	POPTR_0006s11650 (11)	scaffold_6:8865650-8866928(-) (11)	NA	NA	NA	AT3G09980.1	Family of unknown function (DUF662)  	LOC_Os04g33450.2	expressed protein	Medtr7g126780.2	Protein of unknown function DUF662 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4770.1.S1_at	A	A1TS	POPTR_0004s17790	POPTR_0004s17790 (9)	scaffold_4:17834695-17835925(-) (9)	NA	Q86W50	Putative methyltransferase METT10D	AT2G21070.3	methyltransferases 	LOC_Os02g02880.1	expressed protein	NA	NA	NA	GO:0008168|methyltransferase activity	NA
Ptp.4771.1.S1_at	A	A1TS	POPTR_0015s15760	POPTR_0015s15760 (11)	scaffold_15:14967365-14968642(+) (11)	NA	Q9SKC3	Probable E3 ubiquitin-protein ligase ARI9	AT4G19670.2	RING/U-box superfamily protein 	LOC_Os12g43560.1	"zinc finger, putative, expressed"	Medtr2g034440.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.4772.1.S1_s_at	A	A1TS	POPTR_0001s08130	POPTR_0001s08130 (11)	scaffold_1:6189600-6190213(-) (11)	NA	NA	NA	AT1G12420.1	ACT domain repeat 8 	LOC_Os08g02500.1	"ACT domain containing protein, putative"	Medtr8g106560.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
Ptp.4773.1.S1_s_at	A	A2TS	POPTR_0008s04690	POPTR_0010s22140 (10)//POPTR_0008s04690 (10)	scaffold_10:19160721-19160920(+) (10)//scaffold_8:2691876-2692075(-) (10)	NA	NA	NA	AT3G55060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink). 	LOC_Os07g48700.1	expressed protein	Medtr1g146390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4774.1.S1_at	A	A1TS	POPTR_0006s20730	POPTR_0006s20730 (9)	scaffold_6:19712296-19712331(-) (9)	NA	Q9M2F1	40S ribosomal protein S27-2	AT3G61110.1	ribosomal protein S27 	LOC_Os04g27860.1	"40S ribosomal protein S27, putative"	Medtr2g019110.1	Ribosomal protein S27E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4775.1.A1_at	A	A1TS	POPTR_0001s35290	POPTR_0001s35290 (11)	scaffold_1:33632409-33632876(+) (11)	NA	Q9FJV0	Mitogen-activated protein kinase kinase 6	AT5G40440.1	mitogen-activated protein kinase kinase 3 	LOC_Os06g27890.2	"STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g005140.1	Tyrosine protein kinase; Nuclear transport factor 2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4777.1.S1_at	A	A1TS	POPTR_0014s11770	POPTR_0014s11770 (10)	scaffold_14:8739498-8739933(-) (10)	NA	Q6TUG0	DnaJ homolog subfamily B member 11	AT3G62600.1	DNAJ heat shock family protein 	LOC_Os05g06440.1	"dnaJ homolog subfamily B member 11 precursor, putative, expressed"	Medtr7g132750.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.4778.1.S1_at	A	A1TS	POPTR_0009s15280	POPTR_0009s15280 (11)	scaffold_9:11863333-11863373(-) (11)	NA	A6TF98	Bifunctional polymyxin resistance protein ArnA	AT1G08200.1	UDP-D-apiose/UDP-D-xylose synthase 2 	LOC_Os01g73790.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g137650.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4778.1.S1_s_at	A	A1TS	POPTR_0009s15280	POPTR_0009s15280 (11)	scaffold_9:11863211-11863316(-) (11)	NA	A6TF98	Bifunctional polymyxin resistance protein ArnA	AT1G08200.1	UDP-D-apiose/UDP-D-xylose synthase 2 	LOC_Os01g73790.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g137650.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4779.1.S1_s_at	A	A1TS	POPTR_0009s17030	POPTR_0009s17030 (11)	scaffold_9:12836287-12836501(-) (11)	NA	Q99JW2	Aminoacylase-1	AT4G38220.1	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046680.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.4780.1.S1_s_at	A	A1TS	POPTR_0003s06930	POPTR_0003s06930 (11)	scaffold_3:8490355-8490413(-) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.4781.1.S1_at	A	A1TS	POPTR_0019s00690	POPTR_0019s00690 (11)	scaffold_19:435225-435686(-) (11)	NA	Q9LT02	Putative cation-transporting ATPase	AT5G23630.1	phosphate deficiency response 2 	LOC_Os05g33390.1	"cation-transporting ATPase, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
Ptp.4782.1.S1_s_at	A	A2TS	POPTR_0008s01700	POPTR_0008s01800 (11)//POPTR_0008s01700 (11)	scaffold_8:822721-823430(+) (11)//scaffold_8:848287-848996(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os11g05690.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4784.1.S1_at	A	A1TS	POPTR_0003s18970	POPTR_0003s18970 (10)	scaffold_3:17847393-17847683(+) (10)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4788.1.S1_at	A	A1TS	POPTR_0001s09430	POPTR_0001s09430 (11)	scaffold_1:7188694-7190803(+) (11)	NA	NA	NA	AT4G23330.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2365 (InterPro:IPR019314). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4789.1.S1_s_at	A	A1TS	POPTR_0010s21350	POPTR_0010s21350 (11)	scaffold_10:18669027-18669272(-) (11)	NA	P09189	Heat shock cognate 70 kDa protein	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.479.2.A1_at	A	A1TS	POPTR_0015s07290	POPTR_0015s07290 (10)	scaffold_15:8434573-8434608(-) (10)	NA	Q9LF80	Putative glycosyltransferase 3	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g32750.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
Ptp.4791.2.S1_s_at	A	A1TS	POPTR_0009s07280	POPTR_0009s07280 (11)	scaffold_9:6835539-6836185(+) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os12g04020.1	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.1	Hydroxymethylglutaryl-coenzyme A lyase active site 	NA	GO:0003824|catalytic activity	NA
Ptp.4793.1.S1_at	A	A1TS	POPTR_0002s08300	POPTR_0002s08300 (11)	scaffold_2:5782063-5782535(-) (11)	NA	Q8VYX0	IAA-amino acid hydrolase ILR1-like 6	AT1G44350.1	IAA-leucine resistant (ILR)-like gene 6 	LOC_Os06g47620.1	"peptidase, putative, expressed"	Medtr3g100500.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.4794.2.S1_at	A	A1MS	POPTR_0006s10320	POPTR_0006s10320 (10)	scaffold_6:7728564-7728649(+) (10)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.4795.1.S1_s_at	A	A1TS	POPTR_0002s13070	POPTR_0002s13070 (11)	scaffold_2:9726278-9726690(+) (11)	NA	Q9SZA7	Probable disease resistance protein At4g33300	AT4G33300.2	ADR1-like 1 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr1g025080.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.4796.1.S1_at	A	A1TS	POPTR_0006s15630	POPTR_0006s15630 (11)	scaffold_6:13081487-13081573(-) (11)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4799.1.S1_s_at	A	A1TS	POPTR_0001s29510	POPTR_0001s29510 (11)	scaffold_1:28166055-28168121(+) (11)	NA	Q9M2Y6	Uncharacterized protein At3g49720	AT3G49720.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g05070.1	expressed protein	Medtr2g010600.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.48.1.S1_at	A	A1TS	POPTR_0026s00220	POPTR_0026s00220 (9)	scaffold_26:144063-145931(+) (9)	NA	NA	NA	AT4G15790.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). 	LOC_Os12g35620.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.480.1.A1_s_at	A	A1TS	POPTR_0006s10100	POPTR_0006s10100 (11)	scaffold_6:7515401-7516114(+) (11)	NA	Q9M028	LIMR family protein At5g01460	AT5G01460.1	LMBR1-like membrane protein 	LOC_Os06g03760.2	"LMBR1 integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4800.1.S1_at	A	A1TS	POPTR_0013s03870	POPTR_0013s03870 (9)	scaffold_13:2534703-2534884(+) (9)	NA	O24407	Auxin-responsive protein IAA16	AT3G04730.1	indoleacetic acid-induced protein 16 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.4801.1.A1_at	A	A1TS	POPTR_0002s16210	POPTR_0002s16210 (11)	scaffold_2:12113087-12113165(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.1	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4801.1.A1_s_at	A	A1TS	POPTR_0002s16210	POPTR_0002s16210 (11)	scaffold_2:12111861-12113082(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.1	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4802.1.S1_at	A	A1TS	POPTR_0014s03200	POPTR_0014s03200 (10)	scaffold_14:2561556-2561597(-) (10)	NA	Q9SX77	"Uncharacterized protein At1g47420, mitochondrial"	AT1G47420.1	succinate dehydrogenase 5 	LOC_Os04g34100.1	expressed protein	Medtr1g024840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4802.1.S1_s_at	A	A1TS	POPTR_0014s03200	POPTR_0014s03200 (11)	scaffold_14:2561598-2562494(-) (11)	NA	Q9SX77	"Uncharacterized protein At1g47420, mitochondrial"	AT1G47420.1	succinate dehydrogenase 5 	LOC_Os04g34100.1	expressed protein	Medtr1g024840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4803.1.S1_at	A	A1TS	POPTR_0009s12200	POPTR_0009s12200 (11)	scaffold_9:9983222-9984143(-) (11)	NA	P51820	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006545|glycine biosynthetic process||GO:0006231|dTMP biosynthetic process	GO:0004799|thymidylate synthase activity||GO:0004146|dihydrofolate reductase activity	NA
Ptp.4803.1.S1_s_at	A	A1TS	POPTR_0009s12200	POPTR_0009s12200 (11)	scaffold_9:9983003-9983852(-) (11)	NA	P51820	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006545|glycine biosynthetic process||GO:0006231|dTMP biosynthetic process	GO:0004799|thymidylate synthase activity||GO:0004146|dihydrofolate reductase activity	NA
Ptp.4804.1.A1_at	A	A1TS	POPTR_0006s02170	POPTR_0006s02170 (9)	scaffold_6:1423087-1424496(+) (9)	NA	Q53196	Uncharacterized aminotransferase y4uB	AT3G22200.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g10510.1	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.4806.1.S1_at	A	A1TS	POPTR_0008s16350	POPTR_0008s16350 (11)	scaffold_8:10953312-10958604(+) (11)	NA	NA	NA	AT5G52070.1	Agenet domain-containing protein 	LOC_Os05g04860.1	"agenet domain containing protein, putative, expressed"	Medtr4g032970.1	Agenet 	NA	GO:0003723|RNA binding	NA
Ptp.4806.2.S1_a_at	A	A1TS	POPTR_0008s16350	POPTR_0008s16350 (10)	scaffold_8:10952319-10953276(+) (10)	NA	NA	NA	AT5G52070.1	Agenet domain-containing protein 	LOC_Os05g04860.1	"agenet domain containing protein, putative, expressed"	Medtr4g032970.1	Agenet 	NA	GO:0003723|RNA binding	NA
Ptp.4807.1.S1_s_at	A	A1TS	POPTR_0010s17840	POPTR_0010s17840 (10)	scaffold_10:16284793-16286454(-) (11)	NA	Q9SAJ3	"ATP-dependent zinc metalloprotease FTSH 12, chloroplastic"	AT1G79560.1	FTSH protease 12 	NA	NA	Medtr8g065640.1	Peptidase M41; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4809.1.S1_s_at	A	A1TS	POPTR_0006s21990	POPTR_0006s21990 (11)	scaffold_6:21000953-21001063(-) (11)	NA	Q54GN8	Ribosome biogenesis protein NSA2 homolog	AT5G06360.1	Ribosomal protein S8e family protein 	LOC_Os07g47580.1	"ribosomal protein, putative, expressed"	NA	NA	NA	NA	GO:0005622|intracellular
Ptp.4810.1.A1_s_at	A	A1TS	POPTR_0003s17450	POPTR_0003s17450 (11)	scaffold_3:16781025-16781295(-) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4811.1.S1_at	A	A2TS	POPTR_0001s15170	POPTR_0003s08080 (9)//POPTR_0001s15170 (9)	scaffold_1:12003510-12004523(-) (9)//scaffold_3:9539604-9540436(+) (9)	NA	Q8W4H1	GATA transcription factor 26	AT4G17570.3	GATA transcription factor 26 	LOC_Os04g46020.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g013520.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.4812.1.S1_at	A	A1TS	POPTR_0005s27920	POPTR_0005s27920 (11)	scaffold_5:25365025-25365991(-) (11)	NA	Q41140	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha	AT1G76550.1	Phosphofructokinase family protein 	LOC_Os02g48360.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed"	Medtr1g039920.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4813.1.S1_s_at	A	A1TS	POPTR_0001s00260	POPTR_0001s00260 (11)	scaffold_1:131479-132229(-) (11)	NA	B0UV30	Transaldolase	AT1G12230.1	Aldolase superfamily protein 	LOC_Os08g05830.1	"transaldolase, putative, expressed"	Medtr8g106240.1	Transaldolase 	GO:0005975|carbohydrate metabolic process	NA	NA
Ptp.4814.1.S1_at	A	A1TS	POPTR_0006s01200	POPTR_0006s01200 (10)	scaffold_6:673252-673712(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4815.1.S1_s_at	A	A1TS	POPTR_0001s43940	POPTR_0001s43940 (11)	scaffold_1:44356237-44356517(+) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.4815.2.A1_at	A	A1TA	POPTR_0001s43940	POPTR_0001s43940 (9)	scaffold_1:44356155-44356314(-) (9)	POPTR_0011s13310 (6)	C4XGC2	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.4817.1.S1_a_at	A	A1TS	POPTR_0016s03070	POPTR_0016s03070 (11)	scaffold_16:1540866-1540916(+) (11)	NA	Q0JNR2	Cysteine proteinase inhibitor 12	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.4819.1.S1_s_at	A	A1TS	POPTR_0006s21050	POPTR_0006s21050 (11)	scaffold_6:20159058-20162016(-) (11)	NA	Q8LB33	F-box protein At3g58530	AT3G58530.1	RNI-like superfamily protein 	LOC_Os02g17990.2	"Leucine Rich Repeat family protein, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.4822.1.S1_s_at	A	A1TS	POPTR_0017s01240	POPTR_0017s01240 (11)	scaffold_17:870302-871046(+) (11)	NA	Q01332	Beta-carotene hydroxylase	AT4G25700.1	beta-hydroxylase 1 	LOC_Os03g03370.1	"fatty acid hydroxylase, putative, expressed"	Medtr1g126460.2	Carotene hydroxylase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
Ptp.4823.1.S1_at	A	A1TS	POPTR_0011s12700	POPTR_0011s12700 (11)	scaffold_11:15402688-15402903(-) (11)	NA	O02414	"Dynein light chain LC6, flagellar outer arm"	AT4G27360.1	Dynein light chain type 1 family protein 	LOC_Os01g55510.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr6g099400.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
Ptp.4824.1.S1_at	A	A1TS	POPTR_0013s13190	POPTR_0013s13190 (11)	scaffold_13:13741924-13743447(+) (11)	NA	B8E2G7	30S ribosomal protein S16	AT4G34620.1	small subunit ribosomal protein 16 	LOC_Os09g32274.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4825.1.S1_at	A	A1TS	POPTR_0002s08920	POPTR_0002s08920 (10)	scaffold_2:6292785-6293341(-) (10)	NA	Q5Z676	Probable calcium-binding protein CML29	AT1G24620.1	EF hand calcium-binding protein family 	LOC_Os06g47640.1	"OsCML29 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g027220.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4827.1.S1_a_at	A	A1TS	POPTR_0005s24360	POPTR_0005s24360 (11)	scaffold_5:22936934-22937163(+) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr2g088370.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4828.1.S1_at	A	A1TS	POPTR_0007s10980	POPTR_0007s10980 (10)	scaffold_7:11220113-11220969(+) (10)	NA	O81360	"Zeaxanthin epoxidase, chloroplastic"	AT5G67030.1	zeaxanthin epoxidase (ZEP) (ABA1) 	LOC_Os04g37619.1	"zeaxanthin epoxidase, chloroplast precursor, putative, expressed"	CU571152_22.1	Forkhead-associated CU571152.5 100554-94827 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4829.1.S1_at	A	A1TS	POPTR_0009s04650	POPTR_0009s04650 (11)	scaffold_9:4938542-4940082(-) (11)	NA	P32811	"Alpha-glucan phosphorylase, H isozyme"	AT3G46970.1	alpha-glucan phosphorylase 2 	LOC_Os01g63270.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr2g017970.1	"Glycosyl transferase, family 35; Amino acid-binding ACT "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
Ptp.4831.1.S1_s_at	A	A1TS	POPTR_0002s20390	POPTR_0002s20390 (11)	scaffold_2:16449348-16449587(+) (11)	NA	P34914	Epoxide hydrolase 2	AT4G02340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g19150.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138740.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4832.2.A1_s_at	A	A1TS	POPTR_0006s09350	POPTR_0006s09350 (11)	scaffold_6:6876758-6877476(+) (11)	NA	NA	NA	AT5G02020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59080.1); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4833.1.S1_at	A	A2TS	POPTR_0006s05150	POPTR_0006s05160 (11)//POPTR_0006s05150 (11)	scaffold_6:3599825-3600188(-) (11)//scaffold_6:3604212-3604575(-) (11)	NA	P72749	GTP-binding protein TypA/BipA homolog	AT5G13650.1	elongation factor family protein 	LOC_Os02g18450.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4836.1.S1_at	A	A1TS	POPTR_0013s14370	POPTR_0013s14370 (11)	scaffold_13:14589951-14590574(+) (11)	NA	P59015	Vacuolar protein sorting-associated protein 18 homolog	AT1G12470.1	zinc ion binding 	LOC_Os08g08060.1	"vacuolar protein sorting-associated protein 18, putative, expressed"	Medtr5g026230.1	Pep3/Vps18/deep orange 	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	NA
Ptp.4839.1.S1_s_at	A	A1TS	POPTR_0019s11300	POPTR_0019s11300 (11)	scaffold_19:12635325-12636731(-) (11)	NA	NA	NA	AT1G71950.1	"Proteinase inhibitor, propeptide "	LOC_Os05g35740.1	"subtilisin N-terminal Region family protein, expressed"	Medtr1g068620.1	"Proteinase inhibitor, propeptide "	GO:0043086|negative regulation of catalytic activity	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.484.1.S1_at	A	A1TS	POPTR_0006s00790	POPTR_0006s00790 (9)	scaffold_6:429186-429219(-) (9)	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g14870.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150810.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.4842.1.S1_at	A	A1TS	POPTR_0005s22470	POPTR_0005s22470 (11)	scaffold_5:21381010-21381564(-) (11)	NA	NA	NA	AT1G06510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). 	LOC_Os01g50120.2	expressed protein	Medtr5g098730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4843.1.A1_at	A	A1TS	POPTR_0012s07640	POPTR_0012s07640 (11)	scaffold_12:8550059-8550221(-) (11)	NA	NA	NA	AT3G48080.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr3g111260.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.4845.1.S1_at	A	A1TS	POPTR_0001s31910	POPTR_0001s31910 (11)	scaffold_1:30294457-30294689(-) (11)	NA	NA	NA	AT5G64260.1	EXORDIUM like 2 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g120640.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4845.1.S1_x_at	A	A1TS	POPTR_0001s31910	POPTR_0001s31910 (11)	scaffold_1:30294428-30294747(-) (11)	NA	NA	NA	AT5G64260.1	EXORDIUM like 2 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g120640.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4847.1.S1_at	A	A1TS	POPTR_0014s09280	POPTR_0014s09280 (11)	scaffold_14:6881685-6881760(-) (11)	NA	Q84MC7	Abscisic acid receptor PYL9	AT1G01360.1	regulatory component of ABA receptor 1 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4847.1.S1_s_at	A	A1TS	POPTR_0014s09280	POPTR_0014s09280 (11)	scaffold_14:6881831-6881983(-) (11)	NA	Q84MC7	Abscisic acid receptor PYL9	AT1G01360.1	regulatory component of ABA receptor 1 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4847.2.S1_s_at	A	A1TS	POPTR_0014s09280	POPTR_0014s09280 (11)	scaffold_14:6882258-6883566(-) (11)	NA	Q84MC7	Abscisic acid receptor PYL9	AT1G01360.1	regulatory component of ABA receptor 1 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4848.1.S1_s_at	A	A1TS	POPTR_0008s14480	POPTR_0008s14480 (9)	scaffold_8:9611500-9611534(+) (9)	NA	Q7NML9	ATP-dependent Clp protease adapter protein ClpS	AT1G68660.1	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 	LOC_Os01g61700.1	ATP-dependent Clp protease adaptor protein ClpS containing protein	NA	NA	GO:0030163|protein catabolic process||GO:0009057|macromolecule catabolic process	NA	NA
Ptp.4849.1.S1_s_at	A	A1TS	POPTR_0002s06490	POPTR_0002s06490 (11)	scaffold_2:4341962-4342371(+) (11)	NA	Q9SQI2	Protein GIGANTEA	AT1G22770.1	gigantea protein (GI) 	LOC_Os01g08700.6	"GIGANTEA, putative, expressed"	Medtr1g124650.2	"Protein GIGANTEA, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.485.1.S1_s_at	A	A1TS	POPTR_0008s14960	POPTR_0008s14960 (11)	scaffold_8:9972737-9974300(+) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT3G05990.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g08610.1	"leucine-rich repeat family protein, putative, expressed"	Medtr1g132820.1	"Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, related "	NA	GO:0005515|protein binding	NA
Ptp.4850.1.S1_s_at	A	A1TS	POPTR_0010s20760	POPTR_0010s20760 (11)	scaffold_10:18227218-18227855(+) (11)	NA	NA	NA	AT3G11420.1	Protein of unknown function (DUF604) 	LOC_Os03g16334.1	"fringe-related protein, putative, expressed"	Medtr7g088020.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4852.1.A1_at	A	A1MS	POPTR_0015s08340	POPTR_0015s08340 (11)	scaffold_15:9590071-9590262(-) (11)	NA	Q8W485	"Uncharacterized protein At5g50100, mitochondrial"	AT5G50100.1	Putative thiol-disulphide oxidoreductase DCC 	LOC_Os04g57310.1	"thiol-disulphide oxidoreductase DCC, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4852.1.A1_s_at	A	A1TS	POPTR_0015s08340	POPTR_0015s08340 (11)	scaffold_15:9590323-9592181(-) (11)	NA	Q8W485	"Uncharacterized protein At5g50100, mitochondrial"	AT5G50100.1	Putative thiol-disulphide oxidoreductase DCC 	LOC_Os04g57310.1	"thiol-disulphide oxidoreductase DCC, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4853.1.S1_at	A	A1TS	POPTR_0009s13970	POPTR_0009s13970 (11)	scaffold_9:11045666-11048047(-) (11)	NA	NA	NA	AT2G20920.1	Protein of unknown function (DUF3353) 	LOC_Os03g04440.1	expressed protein	Medtr8g115580.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4856.1.S1_at	A	A1TS	POPTR_0014s15860	POPTR_0014s15860 (9)	scaffold_14:11955343-11956289(+) (9)	NA	O94580	Ubiquitin and WLM domain-containing protein C1442.07c	AT5G35690.1	"CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os08g39150.1	expressed protein	Medtr3g106470.1	PUG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4857.2.S1_s_at	A	A1TS	POPTR_0018s01700	POPTR_0018s01700 (11)	scaffold_18:1556175-1557184(+) (11)	NA	NA	NA	AT5G25360.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). 	LOC_Os02g10720.1	expressed protein	Medtr4g005450.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4859.1.S1_at	A	A1MS	POPTR_0007s10680	POPTR_0007s10680 (9)	scaffold_7:10735767-10735981(+) (9)	NA	Q8C2P3	tRNA-dihydrouridine synthase 1-like	AT5G67220.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os06g49870.1	"tRNA-dihydrouridine synthase, putative, expressed"	Medtr8g078600.1	"Dihydrouridine synthase, DuS "	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity	NA
Ptp.4859.2.A1_s_at	A	A1TS	POPTR_0007s10680	POPTR_0007s10680 (11)	scaffold_7:10736781-10737138(+) (11)	NA	Q8C2P3	tRNA-dihydrouridine synthase 1-like	AT5G67220.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os06g49870.1	"tRNA-dihydrouridine synthase, putative, expressed"	Medtr8g078600.1	"Dihydrouridine synthase, DuS "	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity	NA
Ptp.4860.1.S1_s_at	A	A2TS	POPTR_0012s07720	POPTR_0012s07720 (11)//POPTR_0015s08180 (11)	scaffold_12:8626938-8627856(-) (11)//scaffold_15:9439798-9440676(-) (11)	NA	Q86HG0	Mannose-1-phosphate guanyltransferase alpha	AT1G74910.2	ADP-glucose pyrophosphorylase family protein 	LOC_Os03g11050.1	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr6g009470.1	Bacterial transferase hexapeptide repeat 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.4861.1.S1_at	A	A1TS	POPTR_0009s13180	POPTR_0009s13180 (11)	scaffold_9:10559658-10560046(+) (11)	NA	NA	NA	AT2G21180.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g14570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4862.1.S1_s_at	A	A1TS	POPTR_0004s21400	POPTR_0004s21400 (11)	scaffold_4:20545407-20546290(+) (11)	NA	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.1	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4863.1.S1_s_at	A	A1TS	POPTR_0013s07050	POPTR_0013s07050 (11)	scaffold_13:5754946-5755267(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os10g17260.1	"cytochrome P450, putative, expressed"	Medtr3g037120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4863.2.A1_at	A	A1TA	POPTR_0013s07050	POPTR_0013s07050 (11)	scaffold_13:5755126-5755533(+) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os10g17260.1	"cytochrome P450, putative, expressed"	Medtr3g037120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4864.1.S1_at	A	A1TS	POPTR_0003s08420	POPTR_0003s08420 (11)	scaffold_3:9841219-9842213(+) (11)	NA	O04979	"Lon protease homolog 2, peroxisomal"	AT5G47040.1	lon protease 2 	LOC_Os09g36300.1	"OsLonP4 - Putative Lon protease homologue, expressed"	Medtr5g014000.1	"AAA ATPase, central region "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004176|ATP-dependent peptidase activity||GO:0004252|serine-type endopeptidase activity||GO:0005524|ATP binding	NA
Ptp.4865.1.A1_s_at	A	A1TS	POPTR_0011s11390	POPTR_0011s11390 (11)	scaffold_11:14141282-14141379(-) (11)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14420.2	Aldolase-type TIM barrel family protein 	LOC_Os03g57220.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4865.1.A1_x_at	A	A1TS	POPTR_0011s11390	POPTR_0011s11390 (11)	scaffold_11:14141235-14142341(-) (11)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14420.2	Aldolase-type TIM barrel family protein 	LOC_Os03g57220.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4866.1.S1_at	A	A1TS	POPTR_0017s04520	POPTR_0017s04520 (11)	scaffold_17:3475594-3476723(-) (11)	NA	P98205	Putative phospholipid-transporting ATPase 2	AT5G44240.2	aminophospholipid ATPase 2 	LOC_Os11g25980.1	"phospholipid-transporting ATPase 2, putative, expressed"	Medtr6g006450.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4867.1.A1_s_at	A	A1TS	POPTR_0001s07050	POPTR_0001s07050 (11)	scaffold_1:5364937-5365416(-) (11)	NA	Q2YDP3	Dr1-associated corepressor	AT3G12480.1	"nuclear factor Y, subunit C11 "	LOC_Os05g41450.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g044480.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.4869.1.S1_s_at	A	A1TS	POPTR_0016s04550	POPTR_0016s04550 (11)	scaffold_16:2674219-2674516(-) (11)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4869.2.S1_s_at	A	A1TS	POPTR_0016s04550	POPTR_0016s04550 (10)	scaffold_16:2674536-2674772(-) (10)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4871.1.S1_at	A	A1TS	POPTR_0001s19340	POPTR_0001s19340 (9)	scaffold_1:16968531-16969205(-) (9)	NA	NA	NA	AT1G52565.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g126380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4875.1.A1_a_at	A	A1TS	POPTR_0002s24890	POPTR_0002s24890 (11)	scaffold_2:22113494-22114639(+) (11)	NA	P43294	Serine/threonine-protein kinase MHK	AT4G13020.4	Protein kinase superfamily protein 	LOC_Os03g63020.1	"protein kinase domain containing protein, expressed"	Medtr8g012830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4875.2.A1_s_at	A	A1TS	POPTR_0002s24890	POPTR_0002s24890 (11)	scaffold_2:22113313-22114342(+) (11)	NA	P43294	Serine/threonine-protein kinase MHK	AT4G13020.4	Protein kinase superfamily protein 	LOC_Os03g63020.1	"protein kinase domain containing protein, expressed"	Medtr8g012830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4876.1.S1_s_at	A	A1TS	POPTR_0011s16770	POPTR_0011s16770 (10)	scaffold_11:18541763-18542380(-) (10)	NA	P38166	Protein transport protein SFT2	AT5G56020.1	Got1/Sft2-like vescicle transport protein family 	LOC_Os06g19620.1	"SFT2, putative, expressed"	Medtr3g080130.1	SFT2-like 	GO:0016192|vesicle-mediated transport	NA	NA
Ptp.4881.1.S1_at	A	A1TS	POPTR_0006s01360	POPTR_0006s01360 (9)	scaffold_6:789452-789757(-) (9)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.2	"OsFBX323 - F-box domain containing protein, expressed"	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4882.1.S1_s_at	A	A9TS	POPTR_0010s06930	POPTR_0010s06930 (11)//POPTR_0010s07010 (11)//POPTR_0010s06960 (11)//POPTR_0010s06970 (11)//POPTR_0010s06980 (11)//POPTR_0010s06940 (11)//POPTR_0010s06950 (11)//POPTR_0010s07000 (11)//POPTR_0010s06990 (11)	scaffold_10:8159088-8159268(-) (11)//scaffold_10:8164054-8164234(-) (11)//scaffold_10:8176902-8177082(-) (11)//scaffold_10:8184593-8184773(-) (11)//scaffold_10:8203446-8203626(-) (11)//scaffold_10:8212021-8212201(-) (11)//scaffold_10:8229644-8229824(-) (11)//scaffold_10:8236959-8237139(-) (11)//scaffold_10:8257612-8257792(-) (11)	NA	O80763	Probable nucleoredoxin 1	AT1G60420.1	DC1 domain-containing protein 	LOC_Os03g29190.2	"PDI, putative, expressed"	Medtr3g133070.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin domain 2; C1-like; Thioredoxin fold "	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.4883.1.S1_at	A	A1TS	POPTR_0009s05090	POPTR_0009s05090 (10)	scaffold_9:5260456-5261457(+) (10)	NA	NA	NA	AT5G58720.1	smr (Small MutS Related) domain-containing protein 	LOC_Os01g12530.1	"smr domain containing protein, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4886.1.S1_at	A	A1TS	POPTR_0015s11970	POPTR_0015s11970 (11)	scaffold_15:12431130-12433452(-) (11)	NA	NA	NA	AT5G51040.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 532 Blast hits to 532 proteins in 207 species: Archae - 0; Bacteria - 285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). 	LOC_Os11g32480.1	"TPR repeat region family protein, expressed"	Medtr3g151450.1	Protein of unknown function DUF339 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4887.1.A1_a_at	A	A1TS	POPTR_0008s16710	POPTR_0008s16710 (11)	scaffold_8:11233169-11234153(+) (11)	NA	P0A9T5	Protein tas	AT1G04420.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os03g41510.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr1g043110.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4889.1.S1_s_at	A	A1TS	POPTR_0014s12520	POPTR_0014s12520 (11)	scaffold_14:9222376-9222524(-) (11)	NA	Q43582	Probable U6 snRNA-associated Sm-like protein LSm4	AT5G27720.1	Small nuclear ribonucleoprotein family protein 	LOC_Os01g15310.1	"LSM domain containing protein, expressed"	Medtr7g130480.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4891.2.A1_at	A	A1TS	POPTR_0002s15240	POPTR_0002s15240 (10)	scaffold_2:11382503-11383473(+) (10)	NA	B6YWH0	Glyoxylate reductase	AT2G45630.2	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01650.1	erythronate-4-phosphate dehydrogenase domain containing protein	Medtr4g009370.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.4892.1.S1_s_at	A	A1TS	POPTR_0006s22010	POPTR_0006s22010 (11)	scaffold_6:21030815-21030927(-) (11)	NA	Q9CAF2	"Nudix hydrolase 26, chloroplastic"	AT3G10620.1	nudix hydrolase homolog 26 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4893.1.S1_s_at	A	A1TS	POPTR_0015s07370	POPTR_0015s07370 (11)	scaffold_15:8537893-8540829(-) (11)	NA	Q9D853	Methyltransferase-like protein 10	AT1G66680.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g03090.1	"methyltransferase, putative, expressed"	Medtr7g094110.1	Methyltransferase type 12 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.4895.1.S1_x_at	A	A1TS	POPTR_0004s01950	POPTR_0004s01950 (11)	scaffold_4:1226968-1227516(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.4896.1.S1_a_at	A	A1TS	POPTR_0014s11090	POPTR_0014s11090 (11)	scaffold_14:8248842-8249298(-) (11)	NA	Q3EAF9	Probable protein phosphatase 2C 49	AT3G62260.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr1g106080.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4897.1.S1_at	A	A1TS	POPTR_0015s11640	POPTR_0015s11640 (10)	scaffold_15:12188642-12189095(-) (10)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
Ptp.4898.3.S1_at	A	A1TS	POPTR_0003s08360	POPTR_0003s08360 (9)	scaffold_3:9737486-9737528(-) (9)	NA	O23553	"Beta-amylase 3, chloroplastic"	AT4G17090.1	chloroplast beta-amylase 	LOC_Os10g41550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.4899.1.S1_s_at	A	A1TS	POPTR_0002s26160	POPTR_0002s26160 (11)	scaffold_2:23117673-23118396(-) (11)	NA	NA	NA	AT1G75250.2	RAD-like 6 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr8g093090.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.49.1.S1_at	A	A1TS	POPTR_0004s20220	POPTR_0004s20220 (11)	scaffold_4:19841200-19841646(+) (11)	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.490.1.A1_s_at	A	A1TS	POPTR_0001s33990	POPTR_0001s33990 (11)	scaffold_1:32138374-32138449(-) (11)	NA	Q9LK32	Uncharacterized protein At3g27210	AT3G01860.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g69100.1	expressed protein	Medtr6g025370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4900.1.S1_s_at	A	A1TS	POPTR_0014s01590	POPTR_0014s01590 (11)	scaffold_14:1494842-1495450(-) (11)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.4901.1.S1_s_at	A	A1TS	POPTR_0007s04300	POPTR_0007s04300 (9)	scaffold_7:2601953-2602696(+) (9)	NA	NA	NA	AT1G76980.1	BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). 	NA	NA	Medtr3g143160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4902.1.S1_at	A	A1TS	POPTR_0006s25300	POPTR_0006s25300 (11)	scaffold_6:23721615-23722154(-) (11)	NA	NA	NA	AT4G32860.1	unknown protein; Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g36070.1	expressed protein	Medtr8g015610.1	"Avr9/Cf-9 rapidly elicited protein 146, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4902.2.S1_at	A	A1TS	POPTR_0005s02080	POPTR_0005s02080 (10)	scaffold_5:1347257-1348767(+) (10)	NA	Q84J70	Protein DEHYDRATION-INDUCED 19 homolog 3	AT3G05700.1	Drought-responsive family protein 	LOC_Os05g28980.1	"drought induced 19 protein, putative, expressed"	Medtr7g138070.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4904.1.S1_s_at	A	A1TS	POPTR_0001s12970	POPTR_0001s12970 (11)	scaffold_1:10053891-10054183(-) (11)	NA	O23627	"Glycyl-tRNA synthetase 1, mitochondrial"	AT1G29880.1	glycyl-tRNA synthetase / glycine--tRNA ligase 	LOC_Os08g42560.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr3g137760.1	"Glycyl-tRNA synthetase 1, mitochondrial precursor, putative "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.4905.1.A1_at	A	A1TA	POPTR_0006s14140	POPTR_0006s14140 (11)	scaffold_6:11449132-11449228(-) (11)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4905.1.A1_s_at	A	A1TS	POPTR_0001s10990	POPTR_0001s10990 (11)	scaffold_1:8520978-8521668(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4905.2.S1_s_at	A	A1TS	POPTR_0006s14140	POPTR_0006s14140 (11)	scaffold_6:11449134-11449370(+) (11)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4908.1.S1_at	A	A1TS	POPTR_0017s14520	POPTR_0017s14520 (10)	scaffold_17:14538509-14538744(-) (10)	NA	Q8L7E5	WPP domain-interacting tail-anchored protein 1	AT5G11390.1	WPP domain-interacting protein 1 	LOC_Os05g15140.1	expressed protein	Medtr7g015720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4909.2.S1_s_at	A	A1TS	POPTR_0009s12620	POPTR_0009s12620 (9)	scaffold_9:10273292-10273502(+) (9)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os01g54210.1	"GATA zinc finger domain containing protein, expressed"	Medtr4g097100.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.4910.1.S1_s_at	A	A1TS	POPTR_0001s24570	POPTR_0001s24570 (11)	scaffold_1:23829215-23829622(+) (11)	NA	Q94B55	Putative E3 ubiquitin-protein ligase XBAT31	AT2G28840.1	XB3 ortholog 1 in Arabidopsis thaliana 	LOC_Os05g02130.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	AC146807_5.2	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4913.1.A1_at	A	A1MS	POPTR_0014s08410	POPTR_0014s08410 (11)	scaffold_14:6255756-6256160(-) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT4G00300.2	fringe-related protein 	LOC_Os03g03290.1	"receptor-like protein kinase At3g46290 precursor, putative, expressed"	Medtr7g087930.1	"Probable receptor-like protein kinase At3g46290 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4914.1.S1_at	A	A1TS	POPTR_0001s34390	POPTR_0001s34390 (11)	scaffold_1:32545495-32545685(+) (11)	NA	NA	NA	AT5G46410.2	SCP1-like small phosphatase 4 	NA	NA	Medtr2g056340.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4915.1.S1_s_at	A	A1TS	POPTR_0006s11410	POPTR_0006s11410 (11)	scaffold_6:8639202-8639664(-) (11)	NA	Q9ZVI6	Protein LURP-one-related 8	AT2G38640.1	Protein of unknown function (DUF567) 	LOC_Os11g02750.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126520.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4916.2.S1_s_at	A	A1TS	POPTR_0013s00610	POPTR_0013s00610 (11)	scaffold_13:292787-293675(-) (11)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4917.1.S1_at	A	A1TS	POPTR_0001s10390	POPTR_0001s10390 (10)	scaffold_1:8072779-8073032(+) (10)	NA	NA	NA	AT3G61670.1	Protein of unknown function (DUF3133) 	LOC_Os02g15820.1	"extra-large G-protein-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4919.1.S1_at	A	A1TS	POPTR_0002s06980	POPTR_0002s06980 (9)	scaffold_2:4726955-4727242(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
Ptp.492.1.S1_s_at	A	A1TS	POPTR_0015s14830	POPTR_0015s14830 (11)	scaffold_15:14295814-14296183(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.4920.1.S1_s_at	A	A1TS	POPTR_0019s14190	POPTR_0019s14190 (11)	scaffold_19:14940522-14940668(+) (11)	POPTR_0013s14650 (8)	NA	NA	AT1G11360.4	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os07g36600.2	"universal stress protein domain containing protein, putative, expressed"	Medtr2g103170.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.4921.1.S1_at	A	A1TS	POPTR_0014s07850	POPTR_0014s07850 (11)	scaffold_14:5846421-5848570(+) (11)	NA	NA	NA	AT4G00530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01725.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4923.1.S1_s_at	A	A1TS	POPTR_0001s30760	POPTR_0001s30760 (11)	scaffold_1:29236831-29237166(+) (11)	NA	NA	NA	AT2G15270.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink). 	LOC_Os09g01690.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4924.1.S1_s_at	A	A1TS	POPTR_0006s06520	POPTR_0006s06520 (11)	scaffold_6:4718552-4719044(+) (11)	NA	Q9CXF4	TBC1 domain family member 15	AT5G52580.1	RabGAP/TBC domain-containing protein 	LOC_Os02g48000.2	"TBC domain containing protein, expressed"	Medtr8g121210.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.4925.1.S1_s_at	A	A1TS	POPTR_0003s07020	POPTR_0003s07020 (11)	scaffold_3:8622852-8623672(-) (11)	NA	P52894	Alanine aminotransferase 2	AT1G72330.1	alanine aminotransferase 2 	LOC_Os07g42600.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr8g026620.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.4926.1.S1_s_at	A	A1TS	POPTR_0009s12420	POPTR_0009s12420 (9)	scaffold_9:10140821-10141086(+) (9)	NA	P43296	Cysteine proteinase RD19a	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.4927.1.S1_at	A	A1MS	POPTR_0007s12780	POPTR_0007s12780 (11)	scaffold_7:13040747-13041141(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g020000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4928.1.S1_at	A	A2TS	POPTR_0009s15850	POPTR_0009s15850 (11)//POPTR_0009s15870 (11)	scaffold_9:12177339-12177834(+) (11)//scaffold_9:12186938-12187435(+) (11)	NA	NA	NA	AT2G21530.1	SMAD/FHA domain-containing protein  	LOC_Os12g03070.1	"FHA domain containing protein, putative, expressed"	Medtr3g111120.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.493.1.S1_s_at	A	A2TS	POPTR_0004s21750	POPTR_0009s17000 (11)//POPTR_0004s21750 (11)	scaffold_4:20775285-20777186(-) (11)//scaffold_9:12822979-12824433(-) (11)	NA	Q949P3	Uncharacterized protein At2g17340	AT4G35360.1	Uncharacterised conserved protein (UCP030210) 	LOC_Os06g21980.1	"pantothenate kinase 4, putative, expressed"	Medtr7g034760.1	Protein of unknown function DUF89 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4930.1.S1_s_at	A	A1TS	POPTR_0005s21780	POPTR_0005s21780 (11)	scaffold_5:20872790-20873899(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4932.1.S1_s_at	A	A1TS	POPTR_0014s07290	POPTR_0014s07290 (11)	scaffold_14:5502472-5503556(-) (11)	NA	Q9SN28	RING-H2 finger protein ATL7	AT4G10150.1	RING/U-box superfamily protein 	LOC_Os02g45390.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4933.1.S1_at	A	A1TS	POPTR_0010s10770	POPTR_0010s10770 (10)	scaffold_10:11193735-11194306(-) (10)	NA	NA	NA	AT3G11920.1	glutaredoxin-related 	LOC_Os10g34170.1	"glutaredoxin domain containing protein, putative, expressed"	AC233100_25.1	Protein of unknown function DUF547 AC233100.6 89976-92470 E EGN_Mt090430 200	GO:0007242|intracellular signaling cascade||GO:0045454|cell redox homeostasis||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.4934.1.S1_at	A	A1TS	POPTR_0001s27210	POPTR_0001s27210 (9)	scaffold_1:26121815-26121974(+) (9)	NA	Q8CWK7	tRNA-dihydrouridine synthase A	AT3G63510.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os04g20990.1	"tRNA-dihydrouridine synthase, putative, expressed"	Medtr3g029890.1	"Dihydrouridine synthase, DuS "	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity	NA
Ptp.4936.1.S1_s_at	A	A1TS	POPTR_0001s33850	POPTR_0001s33850 (11)	scaffold_1:32008578-32009719(+) (11)	NA	Q9S850	Sulfite oxidase	AT3G01910.1	sulfite oxidase 	LOC_Os08g41830.1	"sulfite oxidase, putative, expressed"	Medtr3g098350.1	Mo-co oxidoreductase dimerisation domain 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0030151|molybdenum ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.494.1.S1_s_at	A	A1TS	POPTR_0012s04140	POPTR_0012s04140 (11)	scaffold_12:3353459-3354088(+) (11)	NA	Q9LE73	Nudix hydrolase 4	AT1G18300.1	nudix hydrolase homolog 4 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr6g080940.2	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4940.1.S1_s_at	A	A1TA	POPTR_0014s01550	POPTR_0014s01550 (10)	scaffold_14:1474952-1475163(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4942.1.S1_a_at	A	A1TS	POPTR_0008s22170	POPTR_0008s22170 (11)	scaffold_8:16541548-16541643(-) (11)	NA	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4942.2.S1_at	A	A1TS	POPTR_0008s22170	POPTR_0008s22170 (11)	scaffold_8:16541704-16542012(-) (11)	POPTR_0008s22210 (8)	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4943.1.S1_at	A	A1TS	POPTR_0005s26340	POPTR_0005s26340 (11)	scaffold_5:24411815-24411863(+) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4943.1.S1_s_at	A	A1TS	POPTR_0005s26340	POPTR_0005s26340 (11)	scaffold_5:24411882-24412105(+) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4944.1.S1_s_at	A	A1TS	POPTR_0003s01050	POPTR_0003s01050 (11)	scaffold_3:924978-926813(-) (11)	NA	O35900	U6 snRNA-associated Sm-like protein LSm2	AT1G03330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g05850.1	"LSM domain containing protein, expressed"	Medtr7g127450.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4945.1.A1_at	A	A1TS	POPTR_0001s09200	POPTR_0001s09200 (11)	scaffold_1:7039032-7039336(-) (11)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4946.1.S1_at	A	A1TS	POPTR_0001s38300	POPTR_0001s38300 (11)	scaffold_1:37389025-37389492(-) (11)	NA	Q40521	Ras-related protein Rab11B	AT5G60860.1	RAB GTPase homolog A1F 	LOC_Os05g48980.1	"ras-related protein, putative, expressed"	Medtr4g109180.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4947.1.S1_s_at	A	A1TS	POPTR_0004s21730	POPTR_0004s21730 (11)	scaffold_4:20767837-20768083(-) (11)	NA	NA	NA	AT4G35320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g40060.1	expressed protein	Medtr5g106850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4951.1.S1_s_at	A	A1TS	POPTR_0001s27680	POPTR_0001s27680 (11)	scaffold_1:26540830-26541379(+) (11)	NA	Q66GR3	Transcription factor bHLH130	AT2G42280.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr3g030690.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.4952.1.S1_at	A	A1TS	POPTR_0010s04790	POPTR_0010s04790 (11)	scaffold_10:5952782-5953102(-) (11)	NA	P52901	"Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial"	AT1G59900.1	pyruvate dehydrogenase complex E1 alpha subunit 	LOC_Os02g50620.1	"dehydrogenase E1 component domain containing protein, expressed"	Medtr8g074090.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
Ptp.4953.1.S1_s_at	A	A2TS	POPTR_0002s12780	POPTR_0515s00230 (11)//POPTR_0002s12780 (11)	scaffold_2:9523034-9524111(+) (11)//scaffold_515:8807-9918(-) (11)	NA	NA	NA	AT5G42890.1	sterol carrier protein 2 	LOC_Os02g52720.1	"peroxisomal multifunctional enzyme type 2, putative"	Medtr1g024360.1	Short-chain dehydrogenase/reductase SDR; Sterol-binding 	NA	NA	NA
Ptp.4956.1.A1_at	A	A1TS	POPTR_0002s08900	POPTR_0002s08900 (11)	scaffold_2:6285498-6286550(-) (11)	NA	P42732	"30S ribosomal protein S13, chloroplastic"	AT5G14320.1	Ribosomal protein S13/S18 family 	LOC_Os03g49710.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr3g098290.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.4956.1.A1_x_at	A	A1TS	POPTR_0002s08900	POPTR_0002s08900 (11)	scaffold_2:6285498-6286615(-) (11)	NA	P42732	"30S ribosomal protein S13, chloroplastic"	AT5G14320.1	Ribosomal protein S13/S18 family 	LOC_Os03g49710.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr3g098290.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.4957.1.S1_at	A	A1TS	POPTR_0008s12500	POPTR_0008s12500 (9)	scaffold_8:8099321-8099421(+) (9)	NA	Q9BVG9	Phosphatidylserine synthase 2	AT1G15110.1	phosphatidyl serine synthase family protein 	LOC_Os01g02890.1	"phosphatidylserine synthase, putative"	NA	NA	GO:0006659|phosphatidylserine biosynthetic process	NA	NA
Ptp.4959.1.S1_at	A	A1TS	POPTR_0003s14350	POPTR_0003s14350 (10)	scaffold_3:14440194-14440384(-) (10)	NA	Q9LIR6	"Beta-amylase 1, chloroplastic"	AT3G23920.1	beta-amylase 1 	LOC_Os03g04770.1	"beta-amylase, putative, expressed"	Medtr5g013790.1	"Glycoside hydrolase, family 14 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4961.1.S1_at	A	A1TS	POPTR_0001s01980	POPTR_0001s01980 (11)	scaffold_1:1440287-1440525(-) (11)	NA	NA	NA	AT1G32230.2	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4962.1.S1_a_at	A	A1TS	POPTR_0018s08260	POPTR_0018s08260 (11)	scaffold_18:9135317-9135434(-) (11)	NA	Q96SW2	Protein cereblon	AT2G25740.1	ATP-dependent protease La (LON) domain protein 	LOC_Os05g44590.2	"ATP-dependent protease La, putative, expressed"	Medtr1g008210.1	"Peptidase S16, lon N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
Ptp.4962.1.S1_at	A	A1TS	POPTR_0018s08260	POPTR_0018s08260 (10)	scaffold_18:9135420-9136424(-) (10)	NA	Q96SW2	Protein cereblon	AT2G25740.1	ATP-dependent protease La (LON) domain protein 	LOC_Os05g44590.2	"ATP-dependent protease La, putative, expressed"	Medtr1g008210.1	"Peptidase S16, lon N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
Ptp.4962.2.A1_at	A	A1TS	POPTR_0018s08260	POPTR_0018s08260 (11)	scaffold_18:9135127-9135316(-) (11)	NA	Q96SW2	Protein cereblon	AT2G25740.1	ATP-dependent protease La (LON) domain protein 	LOC_Os05g44590.2	"ATP-dependent protease La, putative, expressed"	Medtr1g008210.1	"Peptidase S16, lon N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
Ptp.4964.1.S1_at	A	A1TS	POPTR_0001s28440	POPTR_0001s28440 (11)	scaffold_1:27222658-27223082(-) (11)	NA	O80873	Uncharacterized protein At1g07170/At2g30000	AT2G30000.1	PHF5-like protein 	LOC_Os05g30410.1	"PHF5-like protein domain containing protein, expressed"	Medtr4g024080.1	Protein of unknown function UPF0123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4965.1.S1_x_at	A	A1TS	POPTR_0019s13150	POPTR_0019s13150 (11)	scaffold_19:14128028-14128905(+) (11)	NA	O24058	Metallothionein-like protein type 2	AT3G09390.1	metallothionein 2A 	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
Ptp.4966.1.S1_s_at	A	A1TA	POPTR_0008s11320	POPTR_0008s11320 (11)	scaffold_8:7161878-7161916(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4967.1.A1_at	A	A1TS	POPTR_0003s10850	POPTR_0003s10850 (11)	scaffold_3:11706091-11707145(-) (11)	NA	P83436	Conserved oligomeric Golgi complex subunit 7	AT5G51430.1	conserved oligomeric Golgi complex component-related / COG complex component-related 	LOC_Os06g45830.1	expressed protein	Medtr6g005500.1	"conserved oligomeric Golgi complex component 7-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4970.1.S1_s_at	A	A1TS	POPTR_0005s11280	POPTR_0005s11280 (11)	scaffold_5:8176526-8176747(+) (11)	NA	Q9EQH3	Vacuolar protein sorting-associated protein 35	AT2G17790.1	VPS35 homolog A 	LOC_Os03g58700.1	"vacuolar protein sorting-associated protein 35, putative, expressed"	Medtr5g022510.1	Vacuolar protein sorting-associated protein 35 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4972.1.S1_s_at	A	A1TS	POPTR_0008s04700	POPTR_0008s04700 (11)	scaffold_8:2702364-2702917(+) (11)	NA	Q7SXR3	Macrophage erythroblast attacher	AT3G55070.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os05g06760.1	"macrophage erythroblast attacher, putative, expressed"	Medtr1g146370.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4973.1.S1_at	A	A1MS	POPTR_0001s35450	POPTR_0001s35450 (11)	scaffold_1:33787076-33787127(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G14500.1	aldose 1-epimerase family protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.4973.1.S1_s_at	A	A1TS	POPTR_0001s35450	POPTR_0001s35450 (11)	scaffold_1:33785722-33786590(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G14500.1	aldose 1-epimerase family protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.4976.1.A1_at	A	A2TA	POPTR_0004s13090	POPTR_0023s00630 (11)//POPTR_0004s13090 (11)	scaffold_23:461506-461636(-) (11)//scaffold_4:12508452-12508582(+) (11)	NA	Q9FKA5	Uncharacterized protein At5g39570	AT5G39570.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g12580.1	"pro-resilin precursor, putative, expressed"	Medtr6g013300.1	"Stress protein DDR48, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4977.1.S1_s_at	A	A1TS	POPTR_0013s13200	POPTR_0013s13200 (11)	scaffold_13:13752613-13752890(-) (11)	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT3G59780.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g67120.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g105210.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4978.1.S1_at	A	A1TS	POPTR_0005s12300	POPTR_0005s12300 (11)	scaffold_5:9082245-9083477(-) (11)	NA	O05235	Uncharacterized hydrolase yugF	AT4G36530.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g47620.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g035000.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4979.1.S1_a_at	A	A1TS	POPTR_0017s10750	POPTR_0017s10750 (10)	scaffold_17:10265680-10267356(+) (11)	NA	NA	NA	AT5G40500.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g40670.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4981.1.S1_at	A	A1TS	POPTR_0001s14410	POPTR_0001s14410 (11)	scaffold_1:11295910-11297084(-) (11)	NA	Q55680	Uncharacterized protein sll0005	AT3G24190.1	Protein kinase superfamily protein 	LOC_Os02g57160.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4982.1.S1_s_at	A	A1TS	POPTR_0004s17020	POPTR_0004s17020 (11)	scaffold_4:17372023-17372172(-) (11)	NA	Q43075	Arginine decarboxylase	AT4G34710.2	arginine decarboxylase 2 	LOC_Os06g04070.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr4g097390.1	Arginine decarboxylase 	NA	GO:0003824|catalytic activity	NA
Ptp.4984.1.S1_s_at	A	A4TS	POPTR_0008s15760	POPTR_0008s15770 (11)//POPTR_0008s15800 (11)//POPTR_0008s15760 (11)//POPTR_0008s15780 (11)	scaffold_8:10504329-10504585(-) (11)//scaffold_8:10508365-10508621(-) (11)//scaffold_8:10512725-10512981(-) (11)//scaffold_8:10518396-10518652(-) (11)	NA	P11432	"Early light-induced protein, chloroplastic"	AT3G22840.1	Chlorophyll A-B binding family protein 	LOC_Os07g08160.1	"early light-induced protein, chloroplast precursor, putative, expressed"	AC233674_4.1	"Early light-induced protein, chloroplast precursor, putative AC233674.1 17917-16810 E EGN_Mt090430 200"	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.4986.1.S1_s_at	A	A1TS	POPTR_0007s08420	POPTR_0007s08420 (11)	scaffold_7:7243243-7245958(-) (11)	NA	Q84TE6	NAC domain-containing protein 21/22	AT1G56010.2	NAC domain containing protein 1 	LOC_Os06g46270.1	"no apical meristem protein, putative, expressed"	Medtr2g076740.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.4987.1.S1_at	A	A1TS	POPTR_0001s37670	POPTR_0001s37670 (11)	scaffold_1:36641784-36641859(-) (11)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4987.2.S1_s_at	A	A1MS	POPTR_0001s37670	POPTR_0001s37670 (11)	scaffold_1:36642843-36643015(-) (11)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4988.1.S1_at	A	A1TS	POPTR_0002s25810	POPTR_0002s25810 (11)	scaffold_2:22863135-22863553(-) (11)	NA	Q0JG75	"Photosystem II reaction center PSB28 protein, chloroplastic"	AT4G28660.1	photosystem II reaction center PSB28 protein 	LOC_Os01g71190.1	"photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex
Ptp.4988.2.S1_a_at	A	A1TS	POPTR_0002s25810	POPTR_0002s25810 (11)	scaffold_2:22863567-22863646(-) (11)	NA	Q0JG75	"Photosystem II reaction center PSB28 protein, chloroplastic"	AT4G28660.1	photosystem II reaction center PSB28 protein 	LOC_Os01g71190.1	"photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex
Ptp.4990.1.S1_at	A	A1TS	POPTR_0007s12000	POPTR_0007s12000 (9)	scaffold_7:12342336-12343403(-) (9)	NA	O23166	"Thioredoxin-like protein HCF164, chloroplastic"	AT4G37200.1	Thioredoxin superfamily protein 	LOC_Os03g55820.1	"thioredoxin, putative, expressed"	Medtr5g018600.2	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.4991.1.S1_at	A	A1TS	POPTR_0004s02180	POPTR_0004s02180 (11)	scaffold_4:1344842-1345965(-) (11)	NA	Q58E03	DnaJ homolog subfamily C member 25	AT1G61770.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g15590.2	"heat shock protein DnaJ, putative, expressed"	Medtr3g030790.1	DnaJ central region 	NA	GO:0031072|heat shock protein binding	NA
Ptp.4992.1.S1_at	A	A1TS	POPTR_0004s16860	POPTR_0004s16860 (11)	scaffold_4:17236433-17236809(+) (11)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os01g54210.1	"GATA zinc finger domain containing protein, expressed"	Medtr4g097100.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.4993.1.S1_at	A	A1TS	POPTR_0013s15280	POPTR_0013s15280 (10)	scaffold_13:15295749-15296070(-) (10)	NA	Q6S4P4	Transcription factor RF2b	AT2G40620.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g21800.2	"bZIP transcription factor family protein, putative, expressed"	Medtr5g083200.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.4996.1.S1_at	A	A1TS	POPTR_0001s13810	POPTR_0001s13810 (11)	scaffold_1:10898163-10898696(-) (11)	NA	NA	NA	AT5G43260.1	chaperone protein dnaJ-related 	LOC_Os02g30320.1	"drought-induced protein 1, putative, expressed"	Medtr3g103850.1	"drought-induced protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4997.1.A1_a_at	A	A1TS	POPTR_0014s12680	POPTR_0014s12680 (11)	scaffold_14:9321122-9321163(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4997.2.A1_s_at	A	A1TS	POPTR_0014s12680	POPTR_0014s12680 (11)	scaffold_14:9320747-9320845(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4998.1.S1_s_at	A	A1TS	POPTR_0008s23020	POPTR_0008s23020 (11)	scaffold_8:18234145-18235489(-) (11)	NA	Q9SSR1	"DCC family protein At1g52590, chloroplastic"	AT1G52590.1	Putative thiol-disulphide oxidoreductase DCC 	LOC_Os01g07800.2	"thiol-disulphide oxidoreductase DCC, putative, expressed"	Medtr2g126240.1	Putative thiol-disulphide oxidoreductase DCC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.50.1.A1_s_at	A	A1TS	POPTR_0010s19230	POPTR_0010s19230 (11)	scaffold_10:17209145-17210414(+) (11)	NA	P56286	Eukaryotic translation initiation factor 2 subunit alpha	AT2G40290.1	Eukaryotic translation initiation factor 2 subunit 1 	LOC_Os03g18510.1	expressed protein	Medtr3g094730.1	"RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005850|eukaryotic translation initiation factor 2 complex
Ptp.500.1.A1_at	A	A1TS	POPTR_0004s15980	POPTR_0004s15980 (9)	scaffold_4:16449746-16450306(-) (9)	NA	Q9SXA1	Phosphatidylinositol 4-kinase alpha	AT1G49340.1	Phosphatidylinositol 3- and 4-kinase family protein 	LOC_Os03g50320.1	"phosphatidylinositol 4-kinase PI4K, putative, expressed"	Medtr3g159720.1	Ribosomal protein L2; Protein kinase-like; ; 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0004428|inositol or phosphatidylinositol kinase activity"	NA
Ptp.5002.1.S1_at	A	A1TS	POPTR_0004s05970	POPTR_0004s05970 (11)	scaffold_4:4702677-4703133(+) (11)	NA	NA	NA	AT1G29290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g135670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5003.1.S1_s_at	A	A1TS	POPTR_0007s02520	POPTR_0007s02520 (11)	scaffold_7:1490679-1492114(-) (11)	NA	O48650	Protein translation factor SUI1 homolog	AT4G27130.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.2	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.5005.1.S1_s_at	A	A1TS	POPTR_0004s24160	POPTR_0004s24160 (11)	scaffold_4:22893411-22894093(-) (11)	NA	Q3E875	Uncharacterized Rho GTPase-activating protein At5g61530	AT5G61530.1	small G protein family protein / RhoGAP family protein 	LOC_Os07g30300.1	"small G protein family protein, putative, expressed"	NA	NA	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.5007.2.S1_a_at	A	A1TS	POPTR_0009s03660	POPTR_0009s03660 (11)	scaffold_9:4273669-4273707(+) (11)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5007.2.S1_at	A	A1MS	POPTR_0009s03660	POPTR_0009s03660 (11)	scaffold_9:4273481-4273636(+) (11)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5007.2.S1_s_at	A	A1TS	POPTR_0009s03660	POPTR_0009s03660 (10)	scaffold_9:4273708-4273950(+) (10)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5008.1.S1_at	A	A1TS	POPTR_0001s41750	POPTR_0001s41750 (11)	scaffold_1:41444859-41446437(-) (11)	NA	Q2QY07	Cytochrome c-type biogenesis ccda-like chloroplastic protein 2	AT5G54290.1	cytochrome c biogenesis protein family 	LOC_Os12g04270.1	"cytochrome c-type biogenesis protein dbsD-like, putative, expressed"	NA	NA	GO:0017004|cytochrome complex assembly||GO:0055114|oxidation reduction	NA	GO:0016020|membrane
Ptp.5009.1.S1_s_at	A	A1TS	POPTR_0010s23640	POPTR_0010s23640 (11)	scaffold_10:20171133-20171652(+) (11)	NA	Q9M060	Eukaryotic translation initiation factor 6-2	AT3G55620.1	Translation initiation factor IF6 	LOC_Os07g44620.2	"eukaryotic translation initiation factor 6, putative, expressed"	Medtr7g035240.1	Translation initiation factor IF6 	GO:0070925|organelle assembly||GO:0042256|mature ribosome assembly	GO:0043022|ribosome binding	NA
Ptp.5010.1.S1_at	A	A1TS	POPTR_0008s16780	POPTR_0008s16780 (11)	scaffold_8:11289968-11291993(+) (11)	NA	Q9LW64	Uncharacterized protein At3g23325	AT3G23325.1	Splicing factor 3B subunit 5/RDS3 complex subunit 10 	LOC_Os08g34480.1	"splicing factor 3B subunit 5, putative, expressed"	Medtr8g074010.1	Splicing factor 3B subunit 10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5010.2.S1_at	A	A1TS	POPTR_0010s08120	POPTR_0010s08120 (11)	scaffold_10:9052006-9052041(-) (11)	NA	Q9LW64	Uncharacterized protein At3g23325	AT3G23325.1	Splicing factor 3B subunit 5/RDS3 complex subunit 10 	LOC_Os08g34480.1	"splicing factor 3B subunit 5, putative, expressed"	Medtr8g074010.1	Splicing factor 3B subunit 10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5010.2.S1_s_at	A	A1TS	POPTR_0010s08120	POPTR_0010s08120 (11)	scaffold_10:9052027-9052346(-) (11)	NA	Q9LW64	Uncharacterized protein At3g23325	AT3G23325.1	Splicing factor 3B subunit 5/RDS3 complex subunit 10 	LOC_Os08g34480.1	"splicing factor 3B subunit 5, putative, expressed"	Medtr8g074010.1	Splicing factor 3B subunit 10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5011.1.A1_s_at	A	A1TS	POPTR_0004s24230	POPTR_0004s24230 (11)	scaffold_4:22939836-22939987(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5011.3.A1_s_at	A	A1TS	POPTR_0004s24230	POPTR_0004s24230 (11)	scaffold_4:22938943-22939243(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5013.1.S1_at	A	A1TS	POPTR_0015s14240	POPTR_0015s14240 (11)	scaffold_15:13924737-13925397(-) (11)	NA	Q6PCF8	CDGSH iron-sulfur domain-containing protein 2A	AT5G51720.1	"2 iron, 2 sulfur cluster binding "	LOC_Os07g28400.1	"CDGSH iron sulfur domain-containing protein 1, putative, expressed"	NA	NA	NA	"GO:0051537|""2 iron, 2 sulfur cluster binding"""	GO:0043231|intracellular membrane-bounded organelle
Ptp.5013.1.S1_s_at	A	A2TS	POPTR_0012s14230	POPTR_0012s14230 (11)//POPTR_0015s14240 (11)	scaffold_12:14197218-14197602(-) (11)//scaffold_15:13924874-13925174(-) (11)	NA	Q6PCF8	CDGSH iron-sulfur domain-containing protein 2A	AT5G51720.1	"2 iron, 2 sulfur cluster binding "	LOC_Os07g28400.1	"CDGSH iron sulfur domain-containing protein 1, putative, expressed"	NA	NA	NA	"GO:0051537|""2 iron, 2 sulfur cluster binding"""	GO:0043231|intracellular membrane-bounded organelle
Ptp.5015.1.S1_s_at	A	A2TS	POPTR_0006s24300	POPTR_0006s24300 (11)//POPTR_0006s24290 (9)	scaffold_6:22931379-22931805(+) (11)//scaffold_6:22943489-22943915(+) (11)	NA	NA	NA	AT4G33050.3	calmodulin-binding family protein 	LOC_Os01g38980.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5017.1.S1_at	A	A1TS	POPTR_0010s12240	POPTR_0010s12240 (11)	scaffold_10:12297542-12298047(+) (11)	NA	Q9C9U4	Mitogen-activated protein kinase 15	AT1G73670.1	MAP kinase 15 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5018.1.S1_s_at	A	A1TS	POPTR_0005s07900	POPTR_0005s07900 (11)	scaffold_5:5450648-5451186(-) (11)	NA	Q8H1E4	Ethylene-responsive transcription factor RAP2-4	AT1G78080.1	related to AP2 4 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	CU651566_18.1	Pathogenesis-related transcriptional factor and ERF CU651566.9 95071-96871 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.5019.1.S1_at	A	A1MA	POPTR_0002s25120	POPTR_0002s25120 (9)	scaffold_2:22311220-22311882(+) (9)	NA	Q9SW95	"Asparaginyl-tRNA synthetase, cytoplasmic 2"	AT3G07420.1	asparaginyl-tRNA synthetase 2 	LOC_Os01g27520.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr8g011980.1	"tRNA synthetase, class II (D, K and N) "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.502.1.S1_s_at	A	A1TS	POPTR_0010s06130	POPTR_0010s06130 (11)	scaffold_10:7553609-7554432(-) (11)	NA	Q9SAF0	Oxysterol-binding protein-related protein 1D	AT1G13170.1	OSBP(oxysterol binding protein)-related protein 1D 	LOC_Os12g18770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g102710.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
Ptp.5020.1.S1_s_at	A	A2TS	POPTR_0003s15730	POPTR_0381s00240 (11)//POPTR_0003s15730 (11)	scaffold_3:15454892-15455379(-) (11)//scaffold_381:16485-16972(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5021.1.S1_at	A	A1TS	POPTR_0010s16370	POPTR_0010s16370 (11)	scaffold_10:15328525-15328969(-) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5023.1.S1_s_at	A	A1TS	POPTR_0001s30060	POPTR_0001s30060 (11)	scaffold_1:28644314-28644607(-) (11)	NA	Q43295	"Adenylyl-sulfate kinase 1, chloroplastic"	AT2G14750.1	APS kinase 	LOC_Os11g41650.2	"adenylyl-sulfate kinase, putative, expressed"	Medtr5g015640.1	Adenylylsulfate kinase 	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.5025.1.S1_at	A	A1TS	POPTR_0002s13750	POPTR_0002s13750 (11)	scaffold_2:10200072-10200154(+) (11)	NA	Q86BN8	Protein-tyrosine phosphatase mitochondrial 1-like protein	AT2G35680.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os10g41240.1	"dual specificity protein phosphatase, putative, expressed"	Medtr8g105260.2	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.5025.1.S1_s_at	A	A1TS	POPTR_0002s13750	POPTR_0002s13750 (11)	scaffold_2:10200534-10201511(+) (11)	NA	Q86BN8	Protein-tyrosine phosphatase mitochondrial 1-like protein	AT2G35680.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os10g41240.1	"dual specificity protein phosphatase, putative, expressed"	Medtr8g105260.2	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.5026.1.S1_at	A	A1TS	POPTR_0005s11030	POPTR_0005s11030 (11)	scaffold_5:7958124-7958245(-) (11)	NA	Q5Z8P0	Probable protein phosphatase 2C 60	AT3G51370.1	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5026.1.S1_s_at	A	A1TS	POPTR_0005s11030	POPTR_0005s11030 (11)	scaffold_5:7957731-7958137(-) (11)	NA	Q5Z8P0	Probable protein phosphatase 2C 60	AT3G51370.1	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5027.1.S1_at	A	A1TS	POPTR_0001s28930	POPTR_0001s28930 (11)	scaffold_1:27663044-27664880(-) (11)	NA	O64730	Probable protein phosphatase 2C 26	AT2G30170.1	Protein phosphatase 2C family protein 	LOC_Os01g07090.1	"5-azacytidine resistance protein azr1, putative, expressed"	Medtr3g033950.1	Protein phosphatase 2C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.503.1.S1_at	A	A1TS	POPTR_0005s21620	POPTR_0005s21620 (11)	scaffold_5:20734676-20735121(+) (11)	NA	Q9SJ22	Probable cellulose synthase A catalytic subunit 9 [UDP-forming]	AT2G21770.1	cellulose synthase A9 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr1g124990.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.5030.1.A1_at	A	A1TS	POPTR_0002s08450	POPTR_0002s08450 (9)	scaffold_2:5891501-5891673(-) (9)	NA	Q9CAP8	"Long chain acyl-CoA synthetase 9, chloroplastic"	AT1G77590.1	long chain acyl-CoA synthetase 9 	LOC_Os12g07110.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g100870.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.5030.1.A1_x_at	A	A1TS	POPTR_0002s08450	POPTR_0002s08450 (10)	scaffold_2:5891501-5892993(-) (10)	NA	Q9CAP8	"Long chain acyl-CoA synthetase 9, chloroplastic"	AT1G77590.1	long chain acyl-CoA synthetase 9 	LOC_Os12g07110.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g100870.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.5031.1.S1_at	A	A1TS	POPTR_0015s09730	POPTR_0015s09730 (11)	scaffold_15:10869822-10870604(-) (11)	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os12g27520.1	"serine/threonine-protein kinase AFC2, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5031.2.S1_at	A	A1TS	POPTR_0015s09730	POPTR_0015s09730 (10)	scaffold_15:10873156-10873225(-) (10)	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os12g27520.1	"serine/threonine-protein kinase AFC2, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5034.1.A1_a_at	A	A1TS	POPTR_0010s17170	POPTR_0010s17170 (11)	scaffold_10:15886878-15888118(+) (11)	NA	P18160	Dual specificity protein kinase pyk1	AT1G14000.1	VH1-interacting kinase 	LOC_Os07g43900.1	"protein kinase domain containing protein, expressed"	Medtr5g099160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5036.1.S1_s_at	A	A1TS	POPTR_0001s26960	POPTR_0001s26960 (11)	scaffold_1:25932166-25933084(-) (11)	NA	NA	NA	AT5G12470.1	Protein of unknown function (DUF3411) 	LOC_Os05g32230.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5037.1.S1_at	A	A1TS	POPTR_0001s33270	POPTR_0001s33270 (10)	scaffold_1:31462422-31463233(-) (10)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.5037.1.S1_s_at	A	A1TS	POPTR_0001s33270	POPTR_0001s33270 (9)	scaffold_1:31462689-31463003(-) (9)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.5038.1.S1_at	A	A1TS	POPTR_0008s08850	POPTR_0008s08850 (11)	scaffold_8:5488258-5488470(-) (11)	NA	O49255	NAC domain-containing protein 29	AT1G69490.1	"NAC-like, activated by AP3/PI "	LOC_Os12g03040.1	"no apical meristem protein, putative, expressed"	Medtr5g045070.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.5040.1.S1_at	A	A1TS	POPTR_0009s07670	POPTR_0009s07670 (10)	scaffold_9:7110827-7111500(-) (10)	NA	Q5R628	U6 snRNA-associated Sm-like protein LSm5	AT5G48870.1	Small nuclear ribonucleoprotein family protein 	LOC_Os05g32310.1	"LSM domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5041.2.S1_a_at	A	A1TS	POPTR_0006s09880	POPTR_0006s09880 (10)	scaffold_6:7291110-7291163(-) (10)	NA	O06423	GDP-mannose-dependent alpha-mannosyltransferase	AT5G01220.1	sulfoquinovosyldiacylglycerol 2 	LOC_Os07g01030.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr3g024590.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.5041.2.S1_at	A	A1TS	POPTR_0006s09880	POPTR_0006s09880 (11)	scaffold_6:7291210-7291459(-) (11)	NA	O06423	GDP-mannose-dependent alpha-mannosyltransferase	AT5G01220.1	sulfoquinovosyldiacylglycerol 2 	LOC_Os07g01030.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr3g024590.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.5042.1.S1_at	A	A1TS	POPTR_0001s26020	POPTR_0001s26020 (11)	scaffold_1:25111855-25113132(-) (11)	NA	Q56YA5	Serine--glyoxylate aminotransferase	AT2G13360.2	alanine:glyoxylate aminotransferase 	LOC_Os08g39300.4	"aminotransferase, putative, expressed"	Medtr3g071320.2	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5042.3.S1_a_at	A	A1TS	POPTR_0009s05240	POPTR_0009s05240 (11)	scaffold_9:5372179-5372683(-) (11)	NA	Q56YA5	Serine--glyoxylate aminotransferase	AT2G13360.2	alanine:glyoxylate aminotransferase 	LOC_Os08g39300.4	"aminotransferase, putative, expressed"	Medtr3g071320.2	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5042.3.S1_at	A	A1MS	POPTR_0009s05240	POPTR_0009s05240 (11)	scaffold_9:5371946-5372043(-) (11)	NA	Q56YA5	Serine--glyoxylate aminotransferase	AT2G13360.2	alanine:glyoxylate aminotransferase 	LOC_Os08g39300.4	"aminotransferase, putative, expressed"	Medtr3g071320.2	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5042.3.S1_s_at	A	A2TS	POPTR_0001s26020	POPTR_0001s26020 (11)//POPTR_0009s05240 (11)	scaffold_1:25114624-25115199(-) (11)//scaffold_9:5372050-5372601(-) (11)	NA	Q56YA5	Serine--glyoxylate aminotransferase	AT2G13360.2	alanine:glyoxylate aminotransferase 	LOC_Os08g39300.4	"aminotransferase, putative, expressed"	Medtr3g071320.2	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5043.1.S1_at	A	A1TS	POPTR_0010s11760	POPTR_0010s11760 (11)	scaffold_10:11934491-11934800(+) (11)	NA	Q9ZU95	"Nudix hydrolase 17, mitochondrial"	AT2G01670.1	nudix hydrolase homolog 17 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g157270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.5043.1.S1_s_at	A	A1TS	POPTR_0010s11760	POPTR_0010s11760 (10)	scaffold_10:11934984-11935261(+) (10)	NA	Q9ZU95	"Nudix hydrolase 17, mitochondrial"	AT2G01670.1	nudix hydrolase homolog 17 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g157270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.5044.1.S1_s_at	A	A1TS	POPTR_0005s02060	POPTR_0005s02060 (11)	scaffold_5:1333369-1335067(+) (11)	NA	Q6GHH1	DNA polymerase III polC-type	AT5G26940.4	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os03g18940.1	"exonuclease, putative, expressed"	Medtr7g138210.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5045.1.S1_at	A	A1TS	POPTR_0015s08370	POPTR_0015s08370 (9)	scaffold_15:9617998-9618783(-) (10)	NA	NA	NA	AT5G50090.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g50810.1	expressed protein	Medtr8g125270.1	"T10O24.15, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5046.1.S1_at	A	A1TS	POPTR_0015s06930	POPTR_0015s06930 (11)	scaffold_15:7957564-7958370(-) (11)	NA	P09394	Glycerophosphoryl diester phosphodiesterase	AT1G74210.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os01g55780.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr3g076710.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.5049.2.S1_s_at	A	A2TS	POPTR_0064s00290	POPTR_0064s00290 (11)//POPTR_0016s13440 (10)	scaffold_16:12604170-12605227(-) (10)//scaffold_64:92869-93926(+) (11)	NA	P81748	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os12g01680.1	"macrophage migration inhibitory factor, putative"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5051.1.S1_x_at	A	A1TS	POPTR_0002s03020	POPTR_0002s03020 (11)	scaffold_2:1878288-1878598(-) (11)	NA	P25804	Cysteine proteinase 15A	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.5052.1.S1_s_at	A	A1TS	POPTR_0002s20670	POPTR_0002s20670 (11)	scaffold_2:16741750-16743142(-) (11)	NA	NA	NA	AT2G47710.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os12g36640.2	"universal stress protein domain containing protein, putative, expressed"	Medtr1g108490.2	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
Ptp.5053.1.S1_at	A	A1TS	POPTR_0009s06200	POPTR_0009s06200 (9)	scaffold_9:6046661-6049155(+) (9)	NA	Q9LY66	"50S ribosomal protein L1, chloroplastic"	AT3G63490.1	Ribosomal protein L1p/L10e family 	LOC_Os05g32220.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr4g110000.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.5056.1.A1_at	A	A1TA	POPTR_0008s03290	POPTR_0008s03290 (10)	scaffold_8:1754836-1755462(+) (10)	NA	P49311	Glycine-rich RNA-binding protein GRP2A	AT5G04280.1	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 	LOC_Os07g08960.1	"RNA recognition motif containing protein, expressed"	Medtr2g008300.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.5057.1.S1_a_at	A	A1TS	POPTR_0005s23230	POPTR_0005s23230 (11)	scaffold_5:22061149-22061824(-) (11)	NA	NA	NA	AT4G02725.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os03g49450.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5058.1.A1_at	A	A1TS	POPTR_0009s08220	POPTR_0009s08220 (11)	scaffold_9:7562803-7564469(-) (11)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.1	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5059.1.S1_at	A	A1TS	POPTR_0008s13830	POPTR_0008s13830 (10)	scaffold_8:9120609-9120650(+) (10)	NA	NA	NA	AT1G14710.2	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g13560.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5059.1.S1_s_at	A	A1TS	POPTR_0008s13830	POPTR_0008s13830 (11)	scaffold_8:9120222-9120675(+) (11)	NA	NA	NA	AT1G14710.2	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g13560.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.506.1.A1_at	A	A1TS	POPTR_0001s43110	POPTR_0001s43110 (11)	scaffold_1:43184513-43185342(+) (11)	NA	Q9SPE5	Gamma-soluble NSF attachment protein	AT4G20410.1	gamma-soluble NSF attachment protein 	LOC_Os04g52760.1	"gamma-soluble NSF attachment protein, putative, expressed"	AC225479_22.1	Tetratricopeptide-like helical AC225479.3 102118-96445 F EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005783|endoplasmic reticulum||GO:0005794|Golgi apparatus
Ptp.5061.1.S1_s_at	A	A1TS	POPTR_0001s14140	POPTR_0001s14140 (11)	scaffold_1:11105515-11105662(+) (11)	POPTR_0003s17350 (6)	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT2G33170.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g42700.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.5062.1.S1_at	A	A1TS	POPTR_0006s16210	POPTR_0006s16210 (11)	scaffold_6:14123339-14123790(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g158730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5063.1.S1_at	A	A1TS	POPTR_0001s18330	POPTR_0001s18330 (10)	scaffold_1:15377786-15377819(-) (10)//scaffold_1872:1795-1828(+) (10)	NA	O24461	Ras-related protein Rab7	AT3G16100.1	RAB GTPase homolog G3C 	LOC_Os01g12730.1	"ras-related protein, putative, expressed"	Medtr4g009230.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5063.1.S1_s_at	A	A1TS	POPTR_0001s18330	POPTR_0001s18330 (11)	scaffold_1:15377816-15378822(-) (11)//scaffold_1872:795-1798(+) (11)	POPTR_1872s00200 (7)	O24461	Ras-related protein Rab7	AT3G16100.1	RAB GTPase homolog G3C 	LOC_Os01g12730.1	"ras-related protein, putative, expressed"	Medtr4g009230.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5067.1.S1_s_at	A	A1TS	POPTR_0008s19770	POPTR_0008s19770 (11)	scaffold_8:13634646-13635512(+) (11)	NA	NA	NA	AT1G70180.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g39090.1	"SAM domain containing protein, putative, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5068.1.S1_a_at	A	A1TS	POPTR_0006s05190	POPTR_0006s05190 (11)	scaffold_6:3638262-3641141(+) (11)	NA	Q96A57	UPF0414 transmembrane protein C20orf30	AT3G29170.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os12g03500.2	expressed protein	Medtr2g021620.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5068.2.A1_a_at	A	A1TS	POPTR_0006s05190	POPTR_0006s05190 (11)	scaffold_6:3638262-3641154(+) (11)	NA	Q96A57	UPF0414 transmembrane protein C20orf30	AT3G29170.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os12g03500.2	expressed protein	Medtr2g021620.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5070.1.S1_s_at	A	A3TS	POPTR_0009s08670	POPTR_0473s00220 (11)//POPTR_0009s08670 (11)//POPTR_0009s08660 (9)	scaffold_473:3828-3973(+) (11)//scaffold_473:12305-12450(+) (11)//scaffold_9:7851119-7864599(+) (11)//scaffold_9:7856171-7864536(+) (10)	POPTR_0009s08650 (6)	P33154	Pathogenesis-related protein 1	AT4G33720.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr2g010660.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5071.1.S1_at	A	A1TS	POPTR_0001s00860	POPTR_0001s00860 (11)	scaffold_1:715884-716985(-) (11)	POPTR_0003s10620 (7)	Q0WWQ1	Autophagy-related protein 3	AT5G61500.1	autophagy 3 (APG3) 	LOC_Os01g10290.2	"autophagy-related protein 3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5072.1.S1_s_at	A	A1TS	POPTR_0014s18990	POPTR_0014s18990 (11)	scaffold_14:16664939-16665068(+) (11)	NA	Q9FLP6	Small ubiquitin-related modifier 2	AT5G55160.1	small ubiquitin-like modifier 2 	LOC_Os01g68950.1	"ubiquitin family domain containing protein, expressed"	AC225519_6.1	Ubiquitin; Inorganic pyrophosphatase AC225519.5 35386-39197 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5073.1.S1_at	A	A1TS	POPTR_0011s13310	POPTR_0011s13310 (9)	scaffold_11:16026835-16026872(+) (9)	NA	C4XGC2	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.5075.2.S1_s_at	A	A1TS	POPTR_0004s03780	POPTR_0004s03780 (11)	scaffold_4:2634100-2634325(-) (11)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5076.1.S1_a_at	A	A1TS	POPTR_0002s17470	POPTR_0002s17470 (11)	scaffold_2:13228206-13228681(-) (11)	NA	Q498F0	WD repeat-containing protein 44	AT5G53500.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g02440.2	"WD repeat-containing protein 44, putative, expressed"	Medtr1g008870.1	"WD-40 repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5078.1.S1_at	A	A1TS	POPTR_0005s17860	POPTR_0005s17860 (10)	scaffold_5:15613941-15614739(-) (10)	NA	P27140	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.2	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr5g075060.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
Ptp.508.1.S1_at	A	A1TS	POPTR_0011s16880	POPTR_0011s16880 (9)	scaffold_11:18615266-18615823(+) (9)	NA	A7RP64	RNA-binding protein pno1	AT3G13230.1	RNA-binding KH domain-containing protein 	LOC_Os03g02420.1	"KH domain containing protein, putative, expressed"	Medtr3g080390.1	"Isopenicillin N synthetase; KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.5081.1.S1_at	A	A1TS	POPTR_0009s08820	POPTR_0009s08820 (11)	scaffold_9:7980988-7982308(+) (11)	NA	NA	NA	AT1G50020.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os11g34870.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5082.1.S1_s_at	A	A1TS	POPTR_0006s11570	POPTR_0006s11570 (11)	scaffold_6:8775796-8776477(-) (11)	NA	Q43497	Monodehydroascorbate reductase	AT3G52880.1	monodehydroascorbate reductase 1 	LOC_Os09g39380.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.5085.1.S1_s_at	A	A1TS	POPTR_0005s26870	POPTR_0005s26870 (10)	scaffold_5:24727667-24727926(+) (10)	NA	P48147	Prolyl endopeptidase	AT1G76140.1	Prolyl oligopeptidase family protein 	LOC_Os01g01830.1	"OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.5087.1.S1_s_at	A	A1TS	POPTR_0002s24010	POPTR_0002s24010 (11)	scaffold_2:21491959-21492381(+) (11)	NA	NA	NA	AT3G07480.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os09g33950.1	"ferredoxin 1-like isoform 1, putative, expressed"	Medtr7g046710.1	2Fe-2S Ferredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.509.1.S1_at	A	A1TS	POPTR_0002s16230	POPTR_0002s16230 (11)	scaffold_2:12142072-12142484(+) (11)	NA	Q6EVK6	ATP-dependent helicase BRM	AT2G46020.2	"transcription regulatory protein SNF2, putative "	LOC_Os02g02290.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g087810.1	"SNF2-related; Bromodomain; Helicase, C-terminal; ; "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0005634|nucleus
Ptp.5091.1.A1_at	A	A1TS	POPTR_0004s16080	POPTR_0004s16080 (11)	scaffold_4:16528730-16528855(-) (11)	NA	P31022	Ras-related protein Rab7	AT3G18820.1	RAB GTPase homolog G3F 	LOC_Os05g44050.1	"ras-related protein, putative, expressed"	Medtr4g095400.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5092.1.S1_at	A	A1TS	POPTR_0003s03330	POPTR_0003s03330 (11)	scaffold_3:3708582-3709137(-) (11)	NA	O23553	"Beta-amylase 3, chloroplastic"	AT4G17090.1	chloroplast beta-amylase 	LOC_Os10g41550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.5093.1.S1_a_at	A	A1TS	POPTR_0001s09770	POPTR_0001s09770 (11)	scaffold_1:7511674-7512196(-) (11)	NA	Q01332	Beta-carotene hydroxylase	AT4G25700.1	beta-hydroxylase 1 	LOC_Os03g03370.1	"fatty acid hydroxylase, putative, expressed"	Medtr1g126460.2	Carotene hydroxylase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
Ptp.5095.2.S1_a_at	A	A1TS	POPTR_0006s26480	POPTR_0006s26480 (11)	scaffold_6:24706769-24707389(+) (11)	NA	Q99437	V-type proton ATPase 21 kDa proteolipid subunit	AT2G25610.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os01g42430.1	"vacuolar ATP synthase, putative, expressed"	Medtr7g107360.1	"H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.5096.1.S1_s_at	A	A2TS	POPTR_0006s06880	POPTR_0006s06880 (11)//POPTR_0018s13140 (9)	scaffold_18:13589522-13591138(+) (9)//scaffold_6:4984474-4985986(+) (11)	NA	O48781	SPX domain-containing protein 2	AT2G26660.1	SPX domain gene 2 	LOC_Os06g40120.1	"SPX domain containing protein, putative, expressed"	Medtr8g120400.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5098.1.S1_s_at	A	A1TS	POPTR_0010s19580	POPTR_0010s19580 (11)	scaffold_10:17470779-17470985(+) (11)	NA	Q9GZU7	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.51.1.A1_at	A	A1MS	POPTR_0009s07480	POPTR_0009s07480 (11)	scaffold_9:6973554-6974008(-) (11)	NA	NA	NA	AT5G19430.1	RING/U-box superfamily protein 	LOC_Os01g72480.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g100950.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5101.1.S1_at	A	A1TS	POPTR_0008s03990	POPTR_0008s03990 (11)	scaffold_8:2202514-2202593(+) (11)	NA	Q8VX13	Protein disulfide isomerase-like 1-3	AT3G54960.1	PDI-like 1-3 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.5101.1.S1_s_at	A	A1TS	POPTR_0008s03990	POPTR_0008s03990 (11)	scaffold_8:2198295-2202477(+) (11)	NA	Q8VX13	Protein disulfide isomerase-like 1-3	AT3G54960.1	PDI-like 1-3 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.5102.1.A1_at	A	A1TS	POPTR_0015s12470	POPTR_0015s12470 (11)	scaffold_15:12713124-12713160(+) (11)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5102.1.A1_x_at	A	A1TS	POPTR_0015s12470	POPTR_0015s12470 (11)	scaffold_15:12713124-12713261(+) (11)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5103.1.S1_at	A	A1TS	POPTR_0001s10370	POPTR_0001s10370 (10)	scaffold_1:8053166-8053233(-) (10)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5103.1.S1_s_at	A	A1TS	POPTR_0001s10370	POPTR_0001s10370 (11)	scaffold_1:8052707-8053177(-) (11)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5104.1.S1_at	A	A1TS	POPTR_0005s20240	POPTR_0005s20240 (10)	scaffold_5:19281222-19281588(-) (10)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g66120.1	"No apical meristem protein, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.5104.1.S1_s_at	A	A1TS	POPTR_0005s20240	POPTR_0005s20240 (10)	scaffold_5:19281101-19281494(-) (10)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g66120.1	"No apical meristem protein, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.5105.1.S1_at	A	A1TS	POPTR_0016s05560	POPTR_0016s05560 (11)	scaffold_16:3496006-3496207(+) (11)	NA	A2BG43	Glycolipid transfer protein	AT2G34690.1	Glycolipid transfer protein (GLTP) family protein 	LOC_Os03g57140.1	"GLTP domain containing protein, putative, expressed"	Medtr2g130020.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
Ptp.5105.1.S1_s_at	A	A1TS	POPTR_0016s05560	POPTR_0016s05560 (11)	scaffold_16:3495833-3496099(+) (11)	NA	A2BG43	Glycolipid transfer protein	AT2G34690.1	Glycolipid transfer protein (GLTP) family protein 	LOC_Os03g57140.1	"GLTP domain containing protein, putative, expressed"	Medtr2g130020.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
Ptp.5106.1.S1_s_at	A	A1TS	POPTR_0018s10730	POPTR_0018s10730 (10)	scaffold_18:11609220-11609640(+) (10)	NA	Q9ZP41	EG45-like domain containing protein	AT4G30380.1	Barwin-related endoglucanase 	LOC_Os06g47360.1	"beta-expansin precursor, putative, expressed"	Medtr6g084060.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5107.1.S1_s_at	A	A1TS	POPTR_0001s04720	POPTR_0001s04720 (11)	scaffold_1:3655446-3657210(+) (11)	NA	NA	NA	AT2G34860.2	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os08g36140.1	expressed protein	Medtr1g146480.1	"DnaJ-like zinc-finger protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5107.2.S1_at	A	A1MA	POPTR_0001s04730	POPTR_0001s04730 (11)	scaffold_1:3658553-3658711(+) (11)	NA	Q10PP8	Metal tolerance protein 4	AT3G58060.1	Cation efflux family protein 	LOC_Os03g12530.1	"cation efflux family protein, putative, expressed"	Medtr3g083790.1	Cation efflux protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5108.1.S1_s_at	A	A1TS	POPTR_0010s16160	POPTR_0010s16160 (11)	scaffold_10:15171044-15171316(-) (11)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT5G54940.2	Translation initiation factor SUI1 family protein 	LOC_Os07g34589.3	"translation initiation factor SUI1, putative, expressed"	Medtr3g068670.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.5110.1.S1_at	A	A1TS	POPTR_0013s05360	POPTR_0013s05360 (11)	scaffold_13:3831492-3832410(-) (11)	NA	Q9FK59	Eukaryotic translation initiation factor 4E type 3	AT5G18110.1	novel cap-binding protein 	LOC_Os03g15590.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr6g031030.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.5110.1.S1_s_at	A	A1TS	POPTR_0013s05360	POPTR_0013s05360 (11)	scaffold_13:3830911-3831505(-) (11)	NA	Q9FK59	Eukaryotic translation initiation factor 4E type 3	AT5G18110.1	novel cap-binding protein 	LOC_Os03g15590.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr6g031030.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.5111.1.S1_s_at	A	A2TS	POPTR_0001s04710	POPTR_0001s04710 (11)//POPTR_0003s21530 (11)	scaffold_1:3652389-3653010(+) (11)//scaffold_3:19657240-19657878(+) (11)	NA	Q6QNM1	Casein kinase I	AT3G13670.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g005760.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5112.2.S1_a_at	A	A1TS	POPTR_0013s14960	POPTR_0013s14960 (11)	scaffold_13:15033424-15033775(-) (11)	NA	Q8S8P5	Probable WRKY transcription factor 33	AT2G38470.1	WRKY DNA-binding protein 33 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g082420.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.5114.1.S1_at	A	A1TS	POPTR_0013s09500	POPTR_0013s09500 (10)	scaffold_13:9259307-9264002(-) (10)	NA	Q9ASX5	"Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic"	AT3G26580.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g31490.1	expressed protein	Medtr8g081910.1	"Tetratricopeptide TPR_2 repeat protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5118.1.S1_at	A	A1TS	POPTR_0009s05960	POPTR_0009s05960 (11)	scaffold_9:5916094-5917316(+) (11)	NA	NA	NA	AT5G13800.1	pheophytinase 	LOC_Os06g24730.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g041220.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5119.1.S1_s_at	A	A1TS	POPTR_0003s05760	POPTR_0003s05760 (11)	scaffold_3:7131564-7131602(-) (11)	NA	O24381	Plastidic ATP/ADP-transporter	AT1G80300.1	nucleotide transporter 1 	LOC_Os02g11740.1	"plastidic ATP/ADP-transporter, putative, expressed"	Medtr2g123610.1	ADP/ATP carrier protein 	GO:0006810|transport	GO:0005524|ATP binding||GO:0005471|ATP:ADP antiporter activity	GO:0016021|integral to membrane
Ptp.5120.1.S1_at	A	A1TS	POPTR_0016s11670	POPTR_0016s11670 (11)	scaffold_16:10879983-10880439(+) (11)	NA	Q9SR77	"Heme-binding-like protein At3g10130, chloroplastic"	AT2G37970.1	SOUL heme-binding family protein 	LOC_Os01g63210.1	"SOUL heme-binding protein, putative, expressed"	Medtr4g016000.1	SOUL heme-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5121.1.S1_a_at	A	A1TS	POPTR_0002s24730	POPTR_0002s24730 (11)	scaffold_2:22018520-22018711(+) (11)	NA	O14270	Fork head transcription factor 1	AT3G07220.1	SMAD/FHA domain-containing protein  	LOC_Os08g41710.1	"FHA domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5122.1.S1_at	A	A1TS	POPTR_0003s04170	POPTR_0003s04170 (11)	scaffold_3:4864443-4864701(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT1G72710.1	casein kinase 1-like protein 2 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr2g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5123.1.S1_s_at	A	A1TS	POPTR_0014s16660	POPTR_0014s16660 (11)	scaffold_14:12763041-12763306(+) (11)	NA	P73627	Uncharacterized protein sll1770	AT3G07700.2	Protein kinase superfamily protein 	LOC_Os09g07660.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr3g106570.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5124.2.S1_a_at	A	A1TS	POPTR_0014s01710	POPTR_0014s01710 (11)	scaffold_14:1602395-1602992(+) (11)	NA	Q5S1U6	Interferon-related developmental regulator 1	AT1G27760.1	interferon-related developmental regulator family protein / IFRD protein family 	LOC_Os07g39900.1	"interferon-related developmental regulator, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5124.2.S1_at	A	A1MS	POPTR_0014s01710	POPTR_0014s01710 (10)	scaffold_14:1602168-1602403(+) (10)	NA	Q5S1U6	Interferon-related developmental regulator 1	AT1G27760.1	interferon-related developmental regulator family protein / IFRD protein family 	LOC_Os07g39900.1	"interferon-related developmental regulator, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5125.1.S1_s_at	A	A1TS	POPTR_0009s12070	POPTR_0009s12070 (11)	scaffold_9:9916416-9917550(+) (11)	NA	P52578	Isoflavone reductase homolog	AT4G39230.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.5128.1.S1_at	A	A1TS	POPTR_0016s09000	POPTR_0016s09000 (9)	scaffold_16:6831809-6832503(+) (9)	NA	Q27968	DnaJ homolog subfamily C member 3	AT5G03160.1	homolog of mamallian P58IPK 	LOC_Os01g74580.1	"dnaJ homolog subfamily C member, putative, expressed"	Medtr7g121340.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical; ; "	NA	GO:0031072|heat shock protein binding	NA
Ptp.513.1.S1_at	A	A1TS	POPTR_0008s11460	POPTR_0008s11460 (9)	scaffold_8:7279094-7279534(+) (9)	NA	Q5EA37	Coiled-coil domain-containing protein 130	AT1G25682.1	Family of unknown function (DUF572)  	LOC_Os02g21880.1	"coiled-coil domain-containing protein, putative, expressed"	Medtr1g118070.1	Protein of unknown function DUF572 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5130.1.S1_s_at	A	A1TS	POPTR_0008s08730	POPTR_0008s08730 (11)	scaffold_8:5386407-5387119(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5131.1.S1_at	A	A5TS	POPTR_0017s07880	POPTR_0017s07920 (11)//POPTR_0017s07880 (11)//POPTR_0017s07900 (10)//POPTR_0017s07940 (10)//POPTR_0140s00210 (9)	scaffold_140:460-868(+) (9)//scaffold_140:36187-36594(+) (10)//scaffold_17:6193973-6194380(-) (11)//scaffold_17:6256468-6256875(-) (11)//scaffold_17:6281740-6282147(-) (11)//scaffold_17:6321690-6322097(-) (11)	POPTR_0140s00200 (8)	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5132.1.S1_at	A	A1TS	POPTR_0001s26210	POPTR_0001s26210 (9)	scaffold_1:25281951-25282303(+) (9)	NA	P52407	"Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform"	AT4G16260.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g71400.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr4g104070.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.5133.1.S1_s_at	A	A1TS	POPTR_0008s17090	POPTR_0008s17090 (11)	scaffold_8:11487647-11488180(+) (11)	NA	Q9SL05	"Protein PROTON GRADIENT REGULATION 5, chloroplastic"	AT2G05620.1	proton gradient regulation 5 	LOC_Os08g45190.1	"PGR5, putative, expressed"	Medtr1g065260.1	"Protein PROTON GRADIENT REGULATION 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5134.1.S1_at	A	A1TS	POPTR_0007s12650	POPTR_0007s12650 (11)	scaffold_7:12909241-12909395(+) (11)	NA	Q9SCQ7	Acidic leucine-rich nuclear phosphoprotein 32-related protein	AT3G50690.1	Leucine-rich repeat (LRR) family protein 	LOC_Os07g41694.1	"acidic leucine-rich nuclear phosphoprotein 32-related protein 1, putative, expressed"	Medtr8g093560.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
Ptp.5139.1.S1_s_at	A	A1TS	POPTR_0003s05760	POPTR_0003s05760 (11)	scaffold_3:7131633-7131669(-) (11)	NA	O24381	Plastidic ATP/ADP-transporter	AT1G80300.1	nucleotide transporter 1 	LOC_Os02g11740.1	"plastidic ATP/ADP-transporter, putative, expressed"	Medtr2g123610.1	ADP/ATP carrier protein 	GO:0006810|transport	GO:0005524|ATP binding||GO:0005471|ATP:ADP antiporter activity	GO:0016021|integral to membrane
Ptp.514.1.A1_s_at	A	A1TS	POPTR_0002s25720	POPTR_0002s25720 (11)	scaffold_2:22810380-22810581(+) (11)	NA	Q5BK63	"NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (Fragment)"	AT2G20360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g57180.1	"NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed"	NA	NA	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.5140.1.S1_at	A	A1TS	POPTR_0019s05010	POPTR_0019s05010 (11)	scaffold_19:5235274-5235453(+) (11)	NA	Q5RC72	Casein kinase I isoform delta	AT3G03940.1	Protein kinase family protein 	LOC_Os01g56580.2	"CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g100510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5140.1.S1_s_at	A	A1TS	POPTR_0019s05010	POPTR_0019s05010 (11)	scaffold_19:5235464-5237108(+) (11)	NA	Q5RC72	Casein kinase I isoform delta	AT3G03940.1	Protein kinase family protein 	LOC_Os01g56580.2	"CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g100510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5141.1.A1_at	A	A1TS	POPTR_0008s08520	POPTR_0008s08520 (11)	scaffold_8:5279897-5280182(+) (11)	NA	Q337C0	UPF0496 protein 4	AT1G01550.2	Protein of unknown function (DUF793) 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5142.1.A1_at	A	A1TS	POPTR_0003s08150	POPTR_0003s08150 (11)	scaffold_3:9567133-9567524(-) (11)	NA	Q8LB10	"ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic"	AT4G17040.1	CLP protease R subunit 4 	LOC_Os01g16530.1	"OsClp1 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.5143.1.S1_at	A	A1TS	POPTR_0014s02970	POPTR_0014s02970 (11)	scaffold_14:2433995-2434498(-) (11)	NA	NA	NA	AT2G26570.1	Plant protein of unknown function (DUF827) 	LOC_Os03g27800.1	"paramyosin, putative, expressed"	Medtr3g147820.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5144.1.S1_at	A	A1TS	POPTR_0008s08610	POPTR_0008s08610 (10)	scaffold_8:5341368-5341643(+) (10)	NA	P47082	Vacuolar amino acid transporter 1	AT3G28960.1	Transmembrane amino acid transporter family protein 	LOC_Os04g38680.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g010030.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5145.1.S1_at	A	A1TS	POPTR_0008s23030	POPTR_0008s23030 (11)	scaffold_8:18244041-18244579(-) (11)	NA	O24248	Major allergen Pru av 1	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.5146.1.S1_at	A	A1TS	POPTR_0005s19050	POPTR_0005s19050 (11)	scaffold_5:17639541-17639637(+) (11)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT5G67500.2	voltage dependent anion channel 2 	LOC_Os03g10510.2	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.5147.1.S1_s_at	A	A1TS	POPTR_0001s08470	POPTR_0001s08470 (10)	scaffold_1:6453807-6454114(-) (10)	NA	NA	NA	AT4G22920.1	non-yellowing 1 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.1	"senescence-inducible chloroplast stay-green protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5148.2.S1_at	A	A1TS	POPTR_0006s23550	POPTR_0006s23550 (10)	scaffold_6:22264299-22264671(-) (10)	NA	NA	NA	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.6	"smr domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.515.1.S1_at	A	A1TS	POPTR_0005s25910	POPTR_0005s25910 (11)	scaffold_5:24116813-24116855(+) (11)	NA	Q8LE10	HVA22-like protein i	AT5G42560.1	"Abscisic acid-responsive (TB2/DP1, HVA22) family protein "	LOC_Os03g14610.1	"HVA22, putative, expressed"	Medtr3g156300.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.515.1.S1_s_at	A	A1TS	POPTR_0005s25910	POPTR_0005s25910 (11)	scaffold_5:24116429-24116802(+) (11)	NA	Q8LE10	HVA22-like protein i	AT5G42560.1	"Abscisic acid-responsive (TB2/DP1, HVA22) family protein "	LOC_Os03g14610.1	"HVA22, putative, expressed"	Medtr3g156300.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5150.1.S1_at	A	A2TS	POPTR_0007s03620	POPTR_0007s03650 (11)//POPTR_0007s03620 (11)	scaffold_7:2082502-2082816(+) (11)//scaffold_7:2090839-2091153(+) (11)	NA	P16347	Endogenous alpha-amylase/subtilisin inhibitor	AT1G73260.1	kunitz trypsin inhibitor 1 	NA	NA	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.5150.1.S1_s_at	A	A2TS	POPTR_0007s03650	POPTR_0007s03650 (10)//POPTR_0007s03620 (9)	scaffold_7:2082524-2091126(+) (11)	NA	P16347	Endogenous alpha-amylase/subtilisin inhibitor	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.5151.1.S1_s_at	A	A1TS	POPTR_0018s00810	POPTR_0018s00810 (11)	scaffold_18:710864-713425(+) (11)	NA	Q66GV0	Protein Mpv17	AT3G24570.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os01g12800.1	"peroxisomal membrane protein, putative, expressed"	Medtr1g009450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
Ptp.5151.3.S1_at	A	A1TS	POPTR_0018s00810	POPTR_0018s00810 (9)	scaffold_18:715116-715305(+) (9)	NA	Q66GV0	Protein Mpv17	AT3G24570.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os01g12800.1	"peroxisomal membrane protein, putative, expressed"	Medtr1g009450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
Ptp.5153.1.S1_at	A	A1TS	POPTR_0003s21420	POPTR_0003s21420 (10)	scaffold_3:19586043-19586076(-) (10)	NA	NA	NA	AT3G32930.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g41710.2	expressed protein	Medtr3g105910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5153.1.S1_s_at	A	A1TS	POPTR_0003s21420	POPTR_0003s21420 (11)	scaffold_3:19586120-19587682(-) (11)	NA	NA	NA	AT3G32930.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g41710.2	expressed protein	Medtr3g105910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5154.1.S1_s_at	A	A1TS	POPTR_0004s16570	POPTR_0004s16570 (11)	scaffold_4:17004975-17006530(+) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT4G39150.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os05g46620.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.5155.1.S1_s_at	A	A1TS	POPTR_0003s06190	POPTR_0003s06190 (11)	scaffold_3:7637122-7637283(+) (11)	NA	Q8GYL9	Protein Brevis radix-like 2	AT3G14000.2	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5157.1.S1_a_at	A	A1TS	POPTR_0003s09410	POPTR_0003s09410 (11)	scaffold_3:10701370-10701837(+) (11)	NA	NA	NA	AT4G17720.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g50790.1	"RNA recognition motif, putative, expressed"	Medtr8g077770.1	RNA-binding region RNP-1 (RNA recognition motif); Aldo/keto reductase 	NA	GO:0003676|nucleic acid binding	NA
Ptp.5158.1.S1_at	A	A1TS	POPTR_0004s00460	POPTR_0004s00460 (11)	scaffold_4:155052-155442(-) (11)	NA	P31237	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr3g105840.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.5158.1.S1_x_at	A	A1TS	POPTR_0004s00460	POPTR_0004s00460 (11)	scaffold_4:155012-155454(-) (11)	NA	P31237	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr3g105840.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.5159.1.S1_at	A	A1TS	POPTR_0011s09200	POPTR_0011s09200 (11)	scaffold_11:11368597-11368683(-) (11)	NA	Q9FIA1	GDSL esterase/lipase At5g55050	AT5G55050.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g38470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g100470.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.5160.1.A1_s_at	A	A2TS	POPTR_0011s14540	POPTR_0011s14540 (11)//POPTR_0011s14550 (11)	scaffold_11:16911971-16912188(+) (11)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.5160.3.A1_x_at	A	A2TS	POPTR_0011s14540	POPTR_0011s14540 (11)//POPTR_0011s14550 (11)	scaffold_11:16910545-16912419(+) (11)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.5162.1.S1_s_at	A	A1TS	POPTR_0001s25180	POPTR_0001s25180 (11)	scaffold_1:24383663-24384542(+) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT1G07440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.5163.1.S1_s_at	A	A1TS	POPTR_0009s09240	POPTR_0009s09240 (11)	scaffold_9:8241924-8242160(-) (11)	NA	Q9XJ35	"ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic"	AT1G49970.1	CLP protease proteolytic subunit 1 	LOC_Os05g51450.1	"OsClp8 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.5163.2.S1_s_at	A	A1TA	POPTR_0002s19710	POPTR_0002s19710 (11)	scaffold_2:15653871-15654053(-) (11)	NA	A6Q0K5	Calvin cycle protein CP12	AT3G62410.1	CP12 domain-containing protein 2 	LOC_Os01g19740.1	"calvin cycle protein CP12, putative, expressed"	Medtr1g106710.1	Protein of unknown function CP12 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5164.1.A1_s_at	A	A1TS	POPTR_0019s08450	POPTR_0019s08450 (11)	scaffold_19:10001252-10002392(+) (11)	NA	Q42656	Alpha-galactosidase	AT3G56310.1	Melibiase family protein 	LOC_Os07g48160.1	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5165.1.A1_s_at	A	A1TS	POPTR_0008s05870	POPTR_0008s05870 (11)	scaffold_8:3449586-3449650(-) (11)	NA	Q7X999	"Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic"	AT2G39730.2	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.5168.1.S1_s_at	A	A1TS	POPTR_0001s13940	POPTR_0001s13940 (11)	scaffold_1:10985586-10985761(-) (11)	NA	Q9FYF7	REF/SRPP-like protein At1g67360	AT1G67360.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr3g103750.2	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5169.1.S1_a_at	A	A1TS	POPTR_0007s01700	POPTR_0007s01700 (11)	scaffold_7:986725-986809(+) (11)	NA	O24495	"Hydroxyacylglutathione hydrolase 1, mitochondrial"	AT2G43430.1	glyoxalase 2-1 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.517.1.S1_at	A	A1TS	POPTR_0004s02850	POPTR_0004s02850 (10)	scaffold_4:1901795-1902304(+) (10)	NA	B9M4V3	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.5172.1.S1_s_at	A	A1TS	POPTR_0003s16000	POPTR_0003s16000 (11)	scaffold_3:15636839-15637846(+) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G38895.2	RING/U-box superfamily protein 	LOC_Os01g70160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5173.2.S1_s_at	A	A1TS	POPTR_0019s13210	POPTR_0019s13210 (11)	scaffold_19:14170324-14170853(+) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5173.3.A1_at	A	A1TA	POPTR_0019s13210	POPTR_0019s13210 (9)	scaffold_19:14170669-14170936(-) (9)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5175.1.S1_s_at	A	A1TS	POPTR_0007s14890	POPTR_0007s14890 (11)	scaffold_7:14586557-14587028(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5182.1.S1_at	A	A1TS	POPTR_0017s06620	POPTR_0017s06620 (11)	scaffold_17:5027364-5029149(+) (11)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5183.1.S1_s_at	A	A1TS	POPTR_0014s14610	POPTR_0014s14610 (11)	scaffold_14:10675359-10676529(-) (11)	NA	P28553	"Phytoene dehydrogenase, chloroplastic/chromoplastic"	AT4G14210.1	phytoene desaturase 3 	LOC_Os03g08570.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g104320.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5184.1.A1_a_at	A	A1TS	POPTR_0008s00510	POPTR_0008s00510 (11)	scaffold_8:213717-214376(-) (11)	NA	NA	NA	AT3G20270.3	lipid-binding serum glycoprotein family protein 	LOC_Os09g32240.1	"OsFBX332 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5185.1.S1_s_at	A	A1TS	POPTR_0003s14810	POPTR_0003s14810 (11)	scaffold_3:14785773-14786756(-) (11)	NA	NA	NA	AT3G07200.2	RING/U-box superfamily protein 	LOC_Os09g32690.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5187.1.S1_s_at	A	A2TS	POPTR_0006s29440	POPTR_0018s04100 (11)//POPTR_0006s29440 (11)	scaffold_18:3492616-3497305(+) (11)//scaffold_6:26798991-26799059(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G31170.3	Protein kinase superfamily protein 	LOC_Os04g51950.1	"serine/threonine-protein kinase HT1, putative, expressed"	Medtr3g040790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5188.1.A1_at	A	A1TS	POPTR_0003s17670	POPTR_0003s17670 (11)	scaffold_3:16976872-16977891(+) (11)	NA	Q43621	"Glutathione reductase, cytosolic"	AT3G24170.3	glutathione-disulfide reductase 	LOC_Os02g56850.3	"glutathione reductase, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
Ptp.5188.1.A1_s_at	A	A1TS	POPTR_0003s17670	POPTR_0003s17670 (11)	scaffold_3:16976081-16977654(+) (11)	NA	Q43621	"Glutathione reductase, cytosolic"	AT3G24170.3	glutathione-disulfide reductase 	LOC_Os02g56850.3	"glutathione reductase, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
Ptp.519.1.A1_at	A	A1TS	POPTR_0001s06580	POPTR_0001s06580 (11)	scaffold_1:5067533-5067624(+) (11)	NA	NA	NA	AT3G54390.1	sequence-specific DNA binding transcription factors 	LOC_Os09g38570.1	"transcription factor like protein, putative, expressed"	Medtr3g005850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5192.1.S1_at	A	A1TS	POPTR_0010s08510	POPTR_0010s08510 (11)	scaffold_10:9420852-9421136(-) (11)	NA	Q0WPQ2	Ethylene receptor 2	AT3G23150.1	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os04g08740.2	"ethylene receptor, putative, expressed"	Medtr1g093360.1	"Tripartite hybrid signal transduction histidine kinase, BarA type; Bacteriophytochrome "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.5193.1.S1_at	A	A1TS	POPTR_0001s03560	POPTR_0001s03560 (11)	scaffold_1:2850994-2852742(-) (11)	NA	NA	NA	AT1G73060.1	Low  PSII Accumulation 3 	LOC_Os02g02520.1	expressed protein	Medtr4g021740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5194.1.S1_at	A	A1TS	POPTR_0001s12230	POPTR_0001s12230 (11)	scaffold_1:9472996-9473679(-) (11)	NA	Q9SCY2	"FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplastic"	AT5G45680.1	FK506-binding protein 13 	LOC_Os06g45340.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g140460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.5196.1.S1_s_at	A	A2TS	POPTR_0021s00470	POPTR_0021s00490 (11)//POPTR_0021s00470 (11)	scaffold_21:163837-164269(+) (11)//scaffold_21:186725-187157(-) (11)	POPTR_0183s00240 (8)	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g043570.1	"Peptidase aspartic, active site; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5197.1.S1_s_at	A	A1TS	POPTR_0015s14150	POPTR_0015s14150 (11)	scaffold_15:13870845-13871271(+) (11)	NA	Q41382	DEAD-box ATP-dependent RNA helicase 7	AT5G62190.1	DEAD box RNA helicase (PRH75) 	LOC_Os09g34910.1	"DEAD-box ATP-dependent RNA helicase 7, putative, expressed"	Medtr1g130350.1	"Helicase, C-terminal; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
Ptp.5198.1.S1_at	A	A1TS	POPTR_0006s13160	POPTR_0006s13160 (11)	scaffold_6:10380387-10380741(+) (11)	NA	P0CH05	Polyubiquitin	AT5G20620.1	ubiquitin 4 	LOC_Os05g42424.1	"ubiquitin family protein, putative, expressed"	Medtr4g110760.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.52.1.S1_at	A	A1TS	POPTR_0019s05430	POPTR_0019s05430 (11)	scaffold_19:5775544-5775748(-) (11)	NA	O50008	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.5200.1.S1_at	A	A1TS	POPTR_0006s14180	POPTR_0006s14180 (11)	scaffold_6:11508822-11509332(+) (11)	NA	P13869	"Chlorophyll a-b binding protein, chloroplastic"	AT1G19150.1	photosystem I light harvesting complex gene 6 	LOC_Os09g26810.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g050060.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.5201.1.S1_at	A	A1TS	POPTR_0010s12460	POPTR_0010s12460 (11)	scaffold_10:12503059-12503842(+) (11)	NA	A9VRF5	Bifunctional purine biosynthesis protein purH	AT2G35040.1	AICARFT/IMPCHase bienzyme family protein 	LOC_Os08g10570.2	"bifunctional purine biosynthesis protein purH, putative, expressed"	Medtr5g103430.1	AICARFT/IMPCHase bienzyme; MGS-like 	GO:0044281|small molecule metabolic process||GO:0006188|IMP biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.5202.1.A1_a_at	A	A1TS	POPTR_0015s08600	POPTR_0015s08600 (11)	scaffold_15:9917680-9918135(+) (11)	NA	NA	NA	AT5G62840.1	Phosphoglycerate mutase family protein 	LOC_Os01g47190.1	"phosphoglycerate mutase, putative, expressed"	Medtr8g125430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5203.1.S1_at	A	A1TS	POPTR_0001s34760	POPTR_0001s34760 (11)	scaffold_1:33004839-33007627(-) (11)	NA	NA	NA	AT5G14910.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os05g27100.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5205.1.S1_at	A	A1TS	POPTR_0018s01390	POPTR_0018s01390 (11)	scaffold_18:1343201-1343566(+) (11)	NA	NA	NA	AT5G11420.1	"Protein of unknown function, DUF642 "	LOC_Os01g42520.1	expressed protein	Medtr1g013340.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5206.1.S1_at	A	A1TS	POPTR_0001s47210	POPTR_0001s47210 (11)	scaffold_1:47490784-47490887(+) (11)	NA	P46256	"Fructose-bisphosphate aldolase, cytoplasmic isozyme 1"	AT4G26530.2	Aldolase superfamily protein 	LOC_Os06g40640.3	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g104310.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.5206.1.S1_x_at	A	A1TS	POPTR_0001s47210	POPTR_0001s47210 (11)	scaffold_1:47490784-47491091(+) (11)	NA	P46256	"Fructose-bisphosphate aldolase, cytoplasmic isozyme 1"	AT4G26530.2	Aldolase superfamily protein 	LOC_Os06g40640.3	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g104310.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.5207.1.S1_at	A	A1TS	POPTR_0011s00640	POPTR_0011s00640 (11)	scaffold_11:289283-289968(-) (11)	NA	Q8C147	Dedicator of cytokinesis protein 8	AT4G16340.1	guanyl-nucleotide exchange factors;GTPase binding;GTP binding 	LOC_Os03g21080.1	"guanine nucleotide exchange factor, putative, expressed"	Medtr8g065690.1	Dedicator of cytokinesis 	NA	GO:0005085|guanyl-nucleotide exchange factor activity||GO:0051020|GTPase binding||GO:0005525|GTP binding	NA
Ptp.521.1.A1_at	A	A1TS	POPTR_0008s08400	POPTR_0008s08400 (10)	scaffold_8:5207324-5207357(-) (10)	NA	Q42962	"Phosphoglycerate kinase, cytosolic"	AT1G79550.2	phosphoglycerate kinase 	LOC_Os06g45710.1	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077490.2	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
Ptp.5210.1.S1_at	A	A1TS	POPTR_0008s12930	POPTR_0008s12930 (10)	scaffold_8:8419829-8421183(-) (10)	NA	Q39221	SEC12-like protein 2	AT2G01470.1	SEC12P-like 2 protein 	LOC_Os11g39650.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5212.1.A1_at	A	A1TS	POPTR_0007s12700	POPTR_0007s12700 (11)	scaffold_7:12944392-12945123(+) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	Medtr8g093530.1	Protein of unknown function DUF81 	NA	NA	GO:0016021|integral to membrane
Ptp.5214.1.S1_at	A	A1TS	POPTR_0012s10710	POPTR_0012s10710 (11)	scaffold_12:11414922-11415779(+) (11)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT4G25050.1	acyl carrier protein 4 	LOC_Os11g31900.1	"acyl carrier protein, putative, expressed"	Medtr4g152090.1	Acyl carrier protein (ACP) 	NA	GO:0048037|cofactor binding	NA
Ptp.5215.1.S1_at	A	A1TS	POPTR_0015s04880	POPTR_0015s04880 (11)	scaffold_15:5088574-5089685(-) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	Medtr6g083230.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5216.1.S1_at	A	A1TS	POPTR_0013s07700	POPTR_0013s07700 (11)	scaffold_13:6542538-6543330(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G23910.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g42620.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5216.2.S1_at	A	A1MS	POPTR_0013s07700	POPTR_0013s07700 (11)	scaffold_13:6540858-6541410(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G23910.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g42620.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5217.1.S1_at	A	A1TS	POPTR_0001s14360	POPTR_0001s14360 (11)	scaffold_1:11284380-11285576(+) (11)	NA	Q8R1S0	Ubiquinone biosynthesis monooxygenase COQ6	AT3G24200.2	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g62260.1	"FAD binding domain containing protein, expressed"	Medtr2g071190.2	Aromatic-ring hydroxylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5218.2.S1_a_at	A	A1TS	POPTR_0008s17190	POPTR_0008s17190 (11)	scaffold_8:11545981-11546168(+) (11)	NA	Q9ZUU4	"Ribonucleoprotein At2g37220, chloroplastic"	AT1G60000.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g57010.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g065570.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.522.1.S1_at	A	A1TS	POPTR_0006s00360	POPTR_0006s00360 (11)	scaffold_6:144398-145759(-) (11)	NA	P49104	Ras-related protein Rab-2-B	AT4G17170.1	RAB GTPase homolog B1C 	LOC_Os02g37420.1	"ras-related protein, putative, expressed"	Medtr2g033230.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5220.1.S1_at	A	A1MS	POPTR_0006s22210	POPTR_0006s22210 (10)	scaffold_6:21255893-21256010(-) (10)	NA	Q9SVD7	Ubiquitin-conjugating enzyme E2 variant 1D	AT3G52560.1	ubiquitin E2 variant 1D-4 	LOC_Os09g12570.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g157390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5221.1.S1_s_at	A	A1TS	POPTR_0012s10790	POPTR_0012s10790 (11)	scaffold_12:11479319-11479842(-) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os01g70270.3	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5222.1.S1_at	A	A1TS	POPTR_0018s11300	POPTR_0018s11300 (11)	scaffold_18:12107549-12107699(-) (11)	NA	Q8YNE3	Translation initiation factor IF-3	AT2G24060.1	Translation initiation factor 3 protein 	LOC_Os02g55120.1	"translation initiation factor IF-3, putative, expressed"	Medtr8g145010.1	Initiation factor 3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.5222.1.S1_s_at	A	A1TS	POPTR_0018s11300	POPTR_0018s11300 (11)	scaffold_18:12104641-12107379(-) (11)	NA	Q8YNE3	Translation initiation factor IF-3	AT2G24060.1	Translation initiation factor 3 protein 	LOC_Os02g55120.1	"translation initiation factor IF-3, putative, expressed"	Medtr8g145010.1	Initiation factor 3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.5224.1.S1_at	A	A1TS	POPTR_0004s10240	POPTR_0004s10240 (11)	scaffold_4:8792272-8793248(-) (11)	NA	Q9LS01	"Allene oxide cyclase 3, chloroplastic"	AT3G25780.1	allene oxide cyclase 3 	LOC_Os03g32314.1	"allene oxide cyclase 4, chloroplast precursor, putative, expressed"	Medtr5g069000.1	Allene oxide cyclase 	NA	GO:0016853|isomerase activity	GO:0009507|chloroplast
Ptp.5224.1.S1_x_at	A	A1TS	POPTR_0004s10240	POPTR_0004s10240 (11)	scaffold_4:8792272-8793269(-) (11)	NA	Q9LS01	"Allene oxide cyclase 3, chloroplastic"	AT3G25780.1	allene oxide cyclase 3 	LOC_Os03g32314.1	"allene oxide cyclase 4, chloroplast precursor, putative, expressed"	Medtr5g069000.1	Allene oxide cyclase 	NA	GO:0016853|isomerase activity	GO:0009507|chloroplast
Ptp.5225.1.A1_at	A	A1TS	POPTR_0006s22610	POPTR_0006s22610 (11)	scaffold_6:21573624-21574082(-) (11)	NA	NA	NA	AT3G15040.1	"Protein of unknown function, DUF584 "	LOC_Os01g64300.1	"DUF584 domain containing protein, putative, expressed"	Medtr2g107620.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5227.1.A1_at	A	A1TS	POPTR_0010s18200	POPTR_0010s18200 (11)	scaffold_10:16539224-16540150(-) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT1G79380.1	Ca(2)-dependent phospholipid-binding protein (Copine) family 	LOC_Os08g04130.1	"copine-6, putative, expressed"	Medtr6g093150.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5228.1.S1_at	A	A1TS	POPTR_0016s13540	POPTR_0016s13540 (11)	scaffold_16:12726904-12727037(+) (11)	NA	Q9SCU1	Patellin-6	AT3G51670.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os05g27820.1	"patellin protein, putative, expressed"	Medtr7g076560.1	"Patellin-5, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5229.1.S1_s_at	A	A1TS	POPTR_0007s14570	POPTR_0007s14570 (11)	scaffold_7:14319530-14319941(+) (11)	NA	Q8LF99	Probable xyloglucan endotransglucosylase/hydrolase protein 6	AT4G37800.1	xyloglucan endotransglucosylase/hydrolase 7 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g102140.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.523.1.A1_at	A	A1TS	POPTR_0010s14660	POPTR_0010s14660 (11)	scaffold_10:14190207-14190845(-) (11)	NA	P36183	Endoplasmin homolog	AT2G04030.1	Chaperone protein htpG family protein 	LOC_Os09g29840.1	"heat shock protein, putative, expressed"	Medtr5g105030.2	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
Ptp.5230.1.A1_at	A	A1TS	POPTR_0007s04870	POPTR_0007s04870 (10)	scaffold_7:3052357-3053815(-) (10)	NA	Q8LLE5	Filament-like plant protein (Fragment)	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os11g06910.2	"myosin heavy chain-related, putative, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5232.1.S1_at	A	A1TS	POPTR_0010s22790	POPTR_0010s22790 (11)	scaffold_10:19569524-19570357(+) (11)	NA	P12360	"Chlorophyll a-b binding protein 6A, chloroplastic"	AT3G54890.1	photosystem I light harvesting complex gene 1 	LOC_Os06g21590.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr4g012910.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.5237.1.S1_at	A	A1TS	POPTR_0010s17400	POPTR_0010s17400 (11)	scaffold_10:15995629-15995722(+) (11)	NA	NA	NA	AT1G14150.1	PsbQ-like 2 	LOC_Os02g36850.1	"oxygen evolving enhancer protein 3, identical, putative, expressed"	Medtr5g045040.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.5238.1.S1_s_at	A	A1TS	POPTR_0001s39570	POPTR_0001s39570 (11)	scaffold_1:38777604-38781686(-) (11)	NA	Q4V8W7	Ubiquitin domain-containing protein 1	AT1G53400.1	Ubiquitin domain-containing protein 	LOC_Os09g17620.1	"ubiquitin domain-containing protein 2, putative, expressed"	Medtr2g091650.1	"Ubiquitin domain-containing protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5239.1.S1_at	A	A1TS	POPTR_0014s08360	POPTR_0014s08360 (11)	scaffold_14:6219327-6219453(-) (11)	NA	Q9SUS5	E3 ubiquitin-protein ligase RHA1B	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.524.1.A1_at	A	A1TS	POPTR_0001s37810	POPTR_0001s37810 (11)	scaffold_1:36882342-36883333(-) (11)	NA	Q75DK1	SEC14 cytosolic factor	AT1G55840.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g10650.1	"CRAL/TRIO domain containing protein, expressed"	Medtr3g079820.2	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5240.1.S1_s_at	A	A1TS	POPTR_0008s15100	POPTR_0008s15100 (11)	scaffold_8:10092853-10092946(+) (11)	NA	P32869	"Photosystem I reaction center subunit II, chloroplastic"	AT1G03130.1	photosystem I subunit D-2 	LOC_Os08g44680.1	"photosystem I reaction center subunit II, chloroplast precursor, putative, expressed"	Medtr5g006220.1	Photosystem I protein PsaD 	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
Ptp.5241.1.S1_at	A	A1TS	POPTR_0005s23680	POPTR_0005s23680 (10)	scaffold_5:22435607-22436139(+) (10)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5242.1.S1_s_at	A	A1TS	POPTR_0003s01450	POPTR_0003s01450 (11)	scaffold_3:1341949-1342056(+) (11)	NA	P27524	"Chlorophyll a-b binding protein CP24 10A, chloroplastic"	AT1G15820.1	light harvesting complex photosystem II subunit 6 	LOC_Os04g38410.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g008680.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.5242.3.S1_s_at	A	A1TS	POPTR_0003s01450	POPTR_0003s01450 (11)	scaffold_3:1341949-1342028(+) (11)	NA	P27524	"Chlorophyll a-b binding protein CP24 10A, chloroplastic"	AT1G15820.1	light harvesting complex photosystem II subunit 6 	LOC_Os04g38410.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g008680.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.5243.1.S1_at	A	A1TS	POPTR_0014s14610	POPTR_0014s14610 (9)	scaffold_14:10682962-10683854(-) (9)	NA	P28553	"Phytoene dehydrogenase, chloroplastic/chromoplastic"	AT4G14210.1	phytoene desaturase 3 	LOC_Os03g08570.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g104320.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5244.1.S1_s_at	A	A2TS	POPTR_0006s27170	POPTR_0006s27170 (11)//POPTR_0018s01830 (11)	scaffold_18:1663105-1663395(+) (11)//scaffold_6:25156965-25157255(+) (11)	NA	P31853	"ATP synthase subunit b', chloroplastic"	AT4G32260.1	"ATPase, F0 complex, subunit B/B', bacterial/chloroplast "	LOC_Os03g17070.1	"ATP synthase B chain, chloroplast precursor, putative, expressed"	Medtr3g137480.1	"H+-transporting two-sector ATPase, B/B subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0045263|""proton-transporting ATP synthase complex, coupling factor F(o)"""
Ptp.5244.1.S1_x_at	A	A1TS	POPTR_0006s27170	POPTR_0006s27170 (11)	scaffold_6:25156964-25157497(+) (11)	NA	P31853	"ATP synthase subunit b', chloroplastic"	AT4G32260.1	"ATPase, F0 complex, subunit B/B', bacterial/chloroplast "	LOC_Os03g17070.1	"ATP synthase B chain, chloroplast precursor, putative, expressed"	Medtr3g137480.1	"H+-transporting two-sector ATPase, B/B subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0045263|""proton-transporting ATP synthase complex, coupling factor F(o)"""
Ptp.5245.1.S1_at	A	A1TS	POPTR_0008s14230	POPTR_0008s14230 (10)	scaffold_8:9418348-9418469(+) (10)	NA	Q5REY7	UBX domain-containing protein 7	AT1G14570.1	UBX domain-containing protein 	LOC_Os04g57520.1	"UBX domain-containing protein, putative, expressed"	AC229689_1.1	UBX; UAS; Thioredoxin-like fold AC229689.5 4995-12311 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5246.1.S1_at	A	A1TS	POPTR_0013s06710	POPTR_0013s06710 (11)	scaffold_13:5420410-5423004(+) (11)	NA	O80360	"50S ribosomal protein L3, chloroplastic (Fragment)"	AT2G43030.1	Ribosomal protein L3 family protein 	LOC_Os02g04460.1	"ribosomal protein L3, putative, expressed"	Medtr3g163790.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5247.1.S1_at	A	A1TS	POPTR_0002s08410	POPTR_0002s08410 (11)	scaffold_2:5861007-5861538(+) (11)	NA	Q02060	"Photosystem II 22 kDa protein, chloroplastic"	AT1G44575.1	Chlorophyll A-B binding family protein 	LOC_Os01g64960.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr3g100820.1	Chlorophyll A-B binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5248.1.S1_at	A	A1TS	POPTR_0003s12000	POPTR_0003s12000 (11)	scaffold_3:12696600-12697141(+) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G63000.1	nucleotide-rhamnose synthase/epimerase-reductase 	LOC_Os02g45540.1	"synthase, putative, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.525.1.A1_at	A	A1TS	POPTR_0001s31180	POPTR_0001s31180 (9)	scaffold_1:29527472-29527611(+) (10)	NA	Q9SLN1	Filament-like plant protein 7	AT3G19370.3	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5250.1.S1_s_at	A	A1TS	POPTR_0010s10430	POPTR_0010s10430 (10)	scaffold_10:10943510-10943656(+) (10)	NA	NA	NA	AT1G70280.2	NHL domain-containing protein 	LOC_Os02g49770.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5251.1.S1_s_at	A	A1TS	POPTR_0005s05650	POPTR_0005s05650 (11)	scaffold_5:3716222-3718636(-) (11)	NA	P16157	Ankyrin-1	AT3G04710.3	ankyrin repeat family protein 	LOC_Os05g01310.2	"ankyrin repeat family protein, putative, expressed"	Medtr5g046490.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5252.1.S1_at	A	A1TS	POPTR_0003s09030	POPTR_0003s09030 (11)	scaffold_3:10362636-10363103(+) (11)	NA	Q93XM7	Mitochondrial carnitine/acylcarnitine carrier-like protein	AT5G46800.1	Mitochondrial substrate carrier family protein 	LOC_Os10g42299.3	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5252.2.S1_s_at	A	A2TS	POPTR_0001s02500	POPTR_0001s02500 (11)//POPTR_0003s09030 (11)	scaffold_1:1952194-1953143(-) (11)//scaffold_3:10361679-10362593(+) (11)	NA	Q93XM7	Mitochondrial carnitine/acylcarnitine carrier-like protein	AT5G46800.1	Mitochondrial substrate carrier family protein 	LOC_Os10g42299.3	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5254.1.S1_s_at	A	A1TS	POPTR_0008s08400	POPTR_0008s08400 (11)	scaffold_8:5207017-5207209(-) (11)	NA	Q42962	"Phosphoglycerate kinase, cytosolic"	AT1G79550.2	phosphoglycerate kinase 	LOC_Os06g45710.1	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077490.2	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
Ptp.5256.2.S1_s_at	A	A1TS	POPTR_0005s27880	POPTR_0005s27880 (11)	scaffold_5:25351149-25351461(+) (11)	NA	Q8H0U8	DEAD-box ATP-dependent RNA helicase 42	AT1G20920.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g06344.3	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr2g007080.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.5257.1.S1_at	A	A1TS	POPTR_0007s13200	POPTR_0007s13200 (10)	scaffold_7:13325674-13325953(-) (10)	NA	C6E2H7	GTP-binding protein era homolog	AT5G66470.1	RNA binding;GTP binding 	LOC_Os05g49220.2	"GTP-binding protein, putative, expressed"	Medtr5g020330.1	"GTP-binding protein, HSR1-related "	NA	GO:0003723|RNA binding||GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5258.1.S1_s_at	A	A1TS	POPTR_0001s03940	POPTR_0001s03940 (11)	scaffold_1:3138194-3138415(-) (11)	NA	Q4R5D9	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g06240.2	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5259.1.S1_at	A	A2TS	POPTR_0004s10870	POPTR_0004s10880 (11)//POPTR_0004s10870 (11)	scaffold_4:9434859-9435066(-) (11)//scaffold_4:9447124-9447332(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
Ptp.5260.1.S1_at	A	A1TS	POPTR_0001s38080	POPTR_0001s38080 (11)	scaffold_1:37118300-37118784(+) (11)	NA	Q41014	"Ferredoxin--NADP reductase, root isozyme, chloroplastic"	AT4G05390.1	root FNR 1 	LOC_Os03g57120.1	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr2g129660.1	Oxidoreductase FAD/NAD(P)-binding 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5261.1.S1_s_at	A	A1TS	POPTR_0005s26710	POPTR_0005s26710 (11)	scaffold_5:24606054-24606210(-) (11)	NA	Q39227	24-methylenesterol C-methyltransferase 2	AT1G20330.1	sterol methyltransferase 2 	LOC_Os03g04340.1	"C-methyltransferase, putative, expressed"	Medtr3g157340.1	Methyltransferase type 11 	GO:0006694|steroid biosynthetic process	GO:0008168|methyltransferase activity	NA
Ptp.5261.2.S1_a_at	A	A1TS	POPTR_0005s26710	POPTR_0005s26710 (11)	scaffold_5:24607108-24607267(-) (11)	NA	Q39227	24-methylenesterol C-methyltransferase 2	AT1G20330.1	sterol methyltransferase 2 	LOC_Os03g04340.1	"C-methyltransferase, putative, expressed"	Medtr3g157340.1	Methyltransferase type 11 	GO:0006694|steroid biosynthetic process	GO:0008168|methyltransferase activity	NA
Ptp.5262.1.S1_at	A	A1TS	POPTR_0016s03290	POPTR_0016s03290 (9)	scaffold_16:1689010-1689428(-) (9)	NA	NA	NA	AT2G40820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 203 Blast hits to 195 proteins in 64 species: Archae - 3; Bacteria - 13; Metazoa - 26; Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	LOC_Os01g59130.2	"proline-rich family protein, putative, expressed"	Medtr7g106120.1	"3'-5'-exoribonuclease/ RNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5263.1.S1_s_at	A	A1TS	POPTR_0018s05340	POPTR_0018s05340 (11)	scaffold_18:4862451-4862907(+) (11)	NA	NA	NA	AT5G07950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g11450.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5264.1.S1_s_at	A	A1TS	POPTR_0005s08050	POPTR_0005s08050 (11)	scaffold_5:5543157-5543329(-) (11)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
Ptp.5265.1.S1_s_at	A	A2TS	POPTR_0014s11710	POPTR_0852s00210 (11)//POPTR_0014s11710 (11)	scaffold_14:8681708-8682158(+) (11)//scaffold_852:6359-6813(-) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g106920.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.5265.1.S1_x_at	A	A2TS	POPTR_0014s11710	POPTR_0852s00210 (11)//POPTR_0014s11710 (11)	scaffold_14:8681534-8682302(+) (11)//scaffold_852:6215-6989(-) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g106920.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.5266.1.S1_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (11)	scaffold_13:1650610-1650759(+) (11)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5266.1.S1_s_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (11)	scaffold_13:1650755-1651310(+) (11)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5269.1.S1_a_at	A	A1TS	POPTR_0010s06350	POPTR_0010s06350 (11)	scaffold_10:7735261-7735950(-) (11)	NA	NA	NA	AT1G67700.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). "	LOC_Os02g38820.1	expressed protein	Medtr3g103060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5271.1.S1_at	A	A1TS	POPTR_0006s17930	POPTR_0006s17930 (11)	scaffold_6:16226156-16227220(+) (11)	NA	Q84RQ7	"NifU-like protein 3, chloroplastic"	AT4G25910.1	NFU domain protein 3 	LOC_Os06g47940.1	"nifU, putative, expressed"	Medtr2g041590.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
Ptp.5275.1.S1_s_at	A	A1TS	POPTR_0003s18540	POPTR_0003s18540 (11)	scaffold_3:17586099-17588804(-) (11)	NA	Q84L33	Putative DNA repair protein RAD23-1	AT1G79650.2	Rad23 UV excision repair protein family 	LOC_Os02g08300.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
Ptp.5276.1.S1_s_at	A	A3TS	POPTR_0002s12510	POPTR_0014s02500 (10)//POPTR_0014s02480 (10)//POPTR_0002s12510 (10)	scaffold_14:2073656-2073689(+) (10)//scaffold_14:2078246-2078279(+) (10)//scaffold_2:9298578-9298611(+) (10)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.5276.2.S1_at	A	A1TS	POPTR_0014s02480	POPTR_0014s02480 (11)	scaffold_14:2073904-2074025(+) (11)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.5277.1.S1_s_at	A	A1TS	POPTR_0009s14830	POPTR_0009s14830 (11)	scaffold_9:11546596-11548581(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT2G27680.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os09g39390.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5279.1.S1_at	A	A1TS	POPTR_0003s08360	POPTR_0003s08360 (10)	scaffold_3:9738350-9739677(-) (10)	NA	O23553	"Beta-amylase 3, chloroplastic"	AT4G17090.1	chloroplast beta-amylase 	LOC_Os10g41550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.5280.1.S1_at	A	A1TS	POPTR_0019s08290	POPTR_0019s08290 (11)	scaffold_19:9771168-9772678(-) (11)	NA	O04153	Calreticulin-3	AT1G08450.1	calreticulin 3 	LOC_Os05g43170.1	"calreticulin precursor protein, putative, expressed"	Medtr7g089980.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.5281.1.S1_s_at	A	A1TS	POPTR_0008s14850	POPTR_0008s14850 (9)	scaffold_8:9866994-9868087(+) (9)	NA	Q5KTS5	Glucose and ribitol dehydrogenase	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.5282.1.A1_s_at	A	A2TS	POPTR_0004s01990	POPTR_0011s00500 (11)//POPTR_0004s01990 (11)	scaffold_101:29366-29400(+) (11)//scaffold_11:216612-216646(+) (11)//scaffold_4:1268643-1268677(-) (11)	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
Ptp.5283.1.S1_s_at	A	A1TS	POPTR_0006s29130	POPTR_0006s29130 (11)	scaffold_6:26598063-26599042(+) (11)	NA	Q941D3	"Probable plastid-lipid-associated protein 8, chloroplastic"	AT5G19940.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g51792.1	"PAP fibrillin family domain containing protein, expressed"	NA	NA	NA	GO:0005198|structural molecule activity	NA
Ptp.5284.1.S1_at	A	A1TS	POPTR_0006s06680	POPTR_0006s06680 (11)	scaffold_6:4839653-4839920(+) (11)	NA	O22773	"Thylakoid lumenal 16.5 kDa protein, chloroplastic"	AT4G02530.1	chloroplast thylakoid lumen protein 	LOC_Os06g49160.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed"	Medtr8g120710.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5284.1.S1_s_at	A	A1TS	POPTR_0006s06680	POPTR_0006s06680 (11)	scaffold_6:4839951-4840858(+) (11)	NA	O22773	"Thylakoid lumenal 16.5 kDa protein, chloroplastic"	AT4G02530.1	chloroplast thylakoid lumen protein 	LOC_Os06g49160.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed"	Medtr8g120710.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5286.1.S1_at	A	A1TS	POPTR_0001s08820	POPTR_0001s08820 (9)	scaffold_1:6741128-6741658(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr8g009110.1	"Putative invertase inhibitor precursor, "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.5287.1.S1_s_at	A	A1TS	POPTR_0018s10510	POPTR_0018s10510 (11)	scaffold_18:11431787-11432385(+) (11)	NA	Q9FHH8	Zinc finger protein CONSTANS-LIKE 5	AT5G57660.1	CONSTANS-like 5 	LOC_Os06g44450.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr8g128200.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5288.1.S1_s_at	A	A1TS	POPTR_0008s01090	POPTR_0008s01090 (11)	scaffold_8:513156-513507(+) (11)	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT1G16880.1	uridylyltransferase-related 	LOC_Os08g14440.1	"uridylyltransferase-related, putative, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5289.1.S1_s_at	A	A2TS	POPTR_0010s03960	POPTR_0010s04490 (11)//POPTR_0010s03960 (11)	scaffold_10:4714883-4715356(+) (11)//scaffold_10:5594338-5594811(-) (11)	NA	Q06398	Probable glutathione S-transferase GSTU6	AT1G10370.1	Glutathione S-transferase family protein 	LOC_Os10g38140.1	"glutathione S-transferase, putative, expressed"	Medtr8g074880.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.529.1.S1_at	A	A1TS	POPTR_0003s08980	POPTR_0003s08980 (11)	scaffold_3:10265656-10266125(-) (11)	NA	P54638	Acetylornithine deacetylase	AT4G17830.1	Peptidase M20/M25/M40 family protein 	LOC_Os02g46520.1	"hydrolase, putative, expressed"	Medtr5g014590.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.5290.1.S1_at	A	A1TS	POPTR_0001s41190	POPTR_0001s41190 (11)	scaffold_1:40834979-40835619(+) (11)	NA	Q9SEU6	"Thioredoxin M4, chloroplastic"	AT3G15360.1	thioredoxin M-type 4 	LOC_Os02g42700.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.5291.1.S1_at	A	A1TS	POPTR_0005s05630	POPTR_0005s05630 (11)	scaffold_5:3709752-3709874(-) (11)	NA	NA	NA	AT1G72030.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os07g16130.1	"acetyltransferase, GNAT family, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.5293.1.S1_at	A	A1TS	POPTR_0013s05000	POPTR_0013s05000 (11)	scaffold_13:3538366-3538876(+) (11)	NA	Q9SM43	"Violaxanthin de-epoxidase, chloroplastic"	AT1G08550.2	non-photochemical quenching 1 	LOC_Os04g31040.1	"violaxanthin de-epoxidase, putative, expressed"	Medtr7g143290.1	Lipocalin-related protein and Bos/Can/Equ allergen; Calycin 	GO:0055114|oxidation reduction	GO:0046422|violaxanthin de-epoxidase activity	GO:0009507|chloroplast
Ptp.53.1.S1_at	A	A1TS	POPTR_0009s03650	POPTR_0009s03650 (10)	scaffold_9:4261340-4264379(+) (10)	NA	P48495	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.530.1.A1_at	A	A1TS	POPTR_0014s14220	POPTR_0014s14220 (11)	scaffold_14:10416491-10416525(+) (11)	NA	Q8N5U6	RING finger protein 10	AT3G26730.1	RING/U-box superfamily protein 	LOC_Os02g31150.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g097010.1	"Zinc finger, RING-type; Site-specific recombinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5302.1.S1_s_at	A	A1TS	POPTR_0011s12960	POPTR_0011s12960 (11)	scaffold_11:15657587-15658000(-) (11)	NA	NA	NA	AT2G31670.1	Stress responsive alpha-beta barrel domain protein 	LOC_Os07g41810.4	"stress responsive A/B Barrel domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5303.1.S1_s_at	A	A1TS	POPTR_0018s14290	POPTR_0018s14290 (11)	scaffold_18:14526291-14527049(+) (11)	NA	Q8LD27	Proteasome subunit beta type-6	AT4G31300.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os02g53060.1	"peptidase, T1 family, putative, expressed"	Medtr3g132980.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.5304.1.S1_at	A	A1TS	POPTR_0012s09150	POPTR_0012s09150 (9)	scaffold_12:10212919-10213269(-) (9)	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os12g27520.1	"serine/threonine-protein kinase AFC2, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5305.1.S1_at	A	A1TS	POPTR_0005s16160	POPTR_0005s16160 (11)	scaffold_5:12829179-12829749(-) (11)	NA	P42732	"30S ribosomal protein S13, chloroplastic"	AT5G14320.1	Ribosomal protein S13/S18 family 	LOC_Os03g49710.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr3g098290.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.5306.1.S1_s_at	A	A1TS	POPTR_0014s15290	POPTR_0014s15290 (11)	scaffold_14:11364676-11365095(+) (11)	NA	NA	NA	AT5G42570.1	B-cell receptor-associated 31-like 	LOC_Os05g19040.1	"prefoldin, putative, expressed"	Medtr4g064750.1	B-cell receptor-associated 31-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5308.1.S1_s_at	A	A1TS	POPTR_0010s14520	POPTR_0010s14520 (11)	scaffold_10:14088610-14089216(-) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT1G26230.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5310.1.S1_s_at	A	A2TS	POPTR_0001s16430	POPTR_0003s06880 (11)//POPTR_0001s16430 (11)	scaffold_1:13227029-13227063(-) (11)//scaffold_3:8422525-8422559(+) (11)	NA	O80377	40S ribosomal protein SA	AT1G72370.1	40s ribosomal protein SA 	LOC_Os03g08440.1	"ribosomal protein S2, putative, expressed"	AC235488_10.1	"Ribosomal protein S2, eukaryotic and archaeal form AC235488.1 35915-38592 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5311.1.S1_at	A	A1TS	POPTR_0016s04520	POPTR_0016s04520 (11)	scaffold_16:2658362-2658507(+) (11)	NA	Q8S9M1	"Probable plastid-lipid-associated protein 13, chloroplastic"	AT2G42130.4	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g57020.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5312.1.S1_at	A	A1TS	POPTR_0005s26900	POPTR_0005s26900 (11)	scaffold_5:24748821-24750426(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.5313.1.S1_s_at	A	A1TS	POPTR_0007s09770	POPTR_0007s09770 (11)	scaffold_7:9289944-9290291(+) (11)	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5314.1.S1_s_at	A	A1TS	POPTR_0007s00570	POPTR_0007s00570 (11)	scaffold_7:224913-225830(+) (11)	NA	Q39172	Probable NADP-dependent oxidoreductase P1	AT5G16970.1	alkenal reductase 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.5315.1.S1_s_at	A	A1TS	POPTR_0007s12070	POPTR_0007s12070 (11)	scaffold_7:12390303-12390494(+) (11)	NA	Q40459	"Oxygen-evolving enhancer protein 1, chloroplastic"	AT3G50820.1	photosystem II subunit O-2 	LOC_Os01g31690.1	"oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed"	AC157372_6.1	Photosystem II manganese-stabilizing protein PsbO AC157372.2 27120-29314 F EGN_Mt090430 200	GO:0042549|photosystem II stabilization	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.5317.1.S1_s_at	A	A1TS	POPTR_0001s15510	POPTR_0001s15510 (11)	scaffold_1:12346778-12347097(+) (11)	NA	Q869R9	Myb-like protein J	AT5G47390.1	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.5319.1.S1_s_at	A	A1MS	POPTR_0002s04660	POPTR_0002s04660 (11)	scaffold_2:2904376-2904879(+) (11)	NA	Q99090	Light-inducible protein CPRF2	AT4G02640.1	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.5321.1.S1_at	A	A1TS	POPTR_0001s26210	POPTR_0001s26210 (9)	scaffold_1:25281482-25281515(+) (9)	NA	P52407	"Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform"	AT4G16260.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g71400.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr4g104070.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.5321.1.S1_s_at	A	A1TS	POPTR_0001s26210	POPTR_0001s26210 (10)	scaffold_1:25281381-25281483(+) (10)	NA	P52407	"Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform"	AT4G16260.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g71400.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr4g104070.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.5323.1.S1_s_at	A	A1TS	POPTR_0006s12560	POPTR_0006s12560 (9)	scaffold_6:9707596-9708506(+) (9)	NA	Q03943	"Membrane-associated 30 kDa protein, chloroplastic"	AT1G65260.1	plastid transcriptionally active 4 	LOC_Os01g67000.1	"membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed"	Medtr4g092710.2	PspA/IM30 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5325.1.A1_at	A	A1TS	POPTR_0003s09830	POPTR_0003s09830 (11)	scaffold_3:11044832-11045179(+) (11)	NA	P26302	"Phosphoribulokinase, chloroplastic"	AT1G32060.1	phosphoribulokinase 	LOC_Os02g47020.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr5g027690.1	Phosphoribulokinase/uridine kinase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.5326.1.S1_s_at	A	A1TS	POPTR_0007s09630	POPTR_0007s09630 (11)	scaffold_7:9128789-9129462(+) (11)	NA	P10933	"Ferredoxin--NADP reductase, leaf isozyme, chloroplastic"	AT5G66190.1	ferredoxin-NADP(+)-oxidoreductase 1 	LOC_Os02g01340.2	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr5g022240.1	Oxidoreductase FAD/NAD(P)-binding 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5328.1.S1_s_at	A	A1TS	POPTR_0014s15710	POPTR_0014s15710 (11)	scaffold_14:11741794-11741948(+) (11)	NA	Q9MB94	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.5329.1.S1_s_at	A	A1TS	POPTR_0008s09630	POPTR_0008s09630 (11)	scaffold_8:5947994-5949813(-) (11)	NA	O94260	Putative G3BP-like protein	AT2G03640.2	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os03g30550.1	"RNA-binding protein-like, putative, expressed"	Medtr4g115310.1	RNA-binding region RNP-1 (RNA recognition motif); Nuclear transport factor 2 	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.5331.1.S1_at	A	A1TS	POPTR_0006s08820	POPTR_0006s08820 (9)	scaffold_6:6496374-6496514(+) (9)	NA	Q9ZNS1	40S ribosomal protein S7	AT3G02560.2	Ribosomal protein S7e family protein 	LOC_Os05g27940.1	"40S ribosomal protein S7, putative, expressed"	Medtr6g022820.1	Ribosomal protein S7E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5332.1.S1_at	A	A1TS	POPTR_0014s01760	POPTR_0014s01760 (11)	scaffold_14:1644251-1644708(+) (11)	NA	Q42430	Zinc finger protein 1	AT1G27730.1	salt tolerance zinc finger 	LOC_Os12g39400.1	"ZOS12-09 - C2H2 zinc finger protein, expressed"	Medtr1g023440.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5332.1.S1_x_at	A	A1TS	POPTR_0014s01760	POPTR_0014s01760 (11)	scaffold_14:1644206-1644717(+) (11)	NA	Q42430	Zinc finger protein 1	AT1G27730.1	salt tolerance zinc finger 	LOC_Os12g39400.1	"ZOS12-09 - C2H2 zinc finger protein, expressed"	Medtr1g023440.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5333.1.S1_at	A	A1TS	POPTR_0001s05320	POPTR_0001s05320 (11)	scaffold_1:4090385-4090837(-) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.5334.1.S1_at	A	A1TS	POPTR_0002s08280	POPTR_0002s08280 (11)	scaffold_2:5776675-5777825(+) (11)	NA	Q9SFH9	"Delta-aminolevulinic acid dehydratase, chloroplastic"	AT1G69740.2	Aldolase superfamily protein 	LOC_Os06g49110.3	"delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed"	Medtr3g100480.1	Delta-aminolevulinic acid dehydratase 	GO:0033014|tetrapyrrole biosynthetic process	GO:0004655|porphobilinogen synthase activity||GO:0046872|metal ion binding	NA
Ptp.5335.1.S1_s_at	A	A1TS	POPTR_0004s03560	POPTR_0004s03560 (11)	scaffold_4:2469719-2470170(+) (11)	NA	Q9DCD2	Pre-mRNA-splicing factor SYF1	AT5G28740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g44970.1	"XPA-binding protein 2, putative, expressed"	Medtr2g014060.1	"RNA-processing protein, HAT helix "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	GO:0005622|intracellular
Ptp.5336.1.S1_at	A	A1TS	POPTR_0008s02960	POPTR_0008s02960 (9)	scaffold_8:1541428-1541775(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5337.1.S1_at	A	A1TS	POPTR_0010s09360	POPTR_0010s09360 (9)	scaffold_10:10223618-10224812(+) (9)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5338.1.S1_s_at	A	A2TS	POPTR_0007s13400	POPTR_0007s13400 (11)//POPTR_0337s00210 (11)	scaffold_337:6129-7352(+) (11)//scaffold_7:13508651-13509887(-) (11)	NA	Q2HJ56	Periodic tryptophan protein 1 homolog	AT4G18905.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g69970.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g105580.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5338.2.S1_s_at	A	A2TS	POPTR_0007s13400	POPTR_0007s13400 (11)//POPTR_0337s00210 (11)	scaffold_337:5377-6246(+) (11)//scaffold_7:13509770-13510627(-) (11)	NA	Q2HJ56	Periodic tryptophan protein 1 homolog	AT4G18905.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g69970.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g105580.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5340.1.S1_at	A	A1TS	POPTR_0016s14970	POPTR_0016s14970 (11)	scaffold_16:14039283-14039965(-) (11)	NA	Q9M385	"50S ribosomal protein L17, chloroplastic"	AT3G54210.1	Ribosomal protein L17 family protein 	LOC_Os03g60100.1	"50S ribosomal protein L17, putative, expressed"	Medtr3g143710.1	Ribosomal protein L17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5341.1.S1_at	A	A1TS	POPTR_0010s20060	POPTR_0010s20060 (11)	scaffold_10:17812514-17813069(-) (11)	NA	O20252	"Sedoheptulose-1,7-bisphosphatase, chloroplastic"	AT3G55800.1	sedoheptulose-bisphosphatase 	LOC_Os04g16680.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr3g093130.1	"Inositol phosphatase/fructose-1,6-bisphosphatase; Glycoside hydrolase, family 5 "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
Ptp.5342.1.S1_at	A	A1TS	POPTR_0003s17000	POPTR_0003s17000 (11)	scaffold_3:16490238-16490652(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.5343.1.S1_at	A	A1TS	POPTR_0002s05330	POPTR_0002s05330 (11)	scaffold_2:3472149-3475041(-) (11)	NA	P82231	"Ribosome-recycling factor, chloroplastic"	AT3G63190.1	"ribosome recycling factor, chloroplast precursor "	LOC_Os07g38300.1	"ribosome recycling factor, putative, expressed"	Medtr1g086330.1	Ribosome recycling factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	NA	NA
Ptp.5344.1.S1_at	A	A1TS	POPTR_0008s19160	POPTR_0008s19160 (11)	scaffold_8:13127655-13128952(-) (11)	NA	P52894	Alanine aminotransferase 2	AT1G70580.4	alanine-2-oxoglutarate aminotransferase 2 	LOC_Os07g01760.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g034580.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.5345.1.S1_at	A	A1MS	POPTR_0016s02790	POPTR_0016s02790 (10)	scaffold_16:1384164-1384331(+) (10)	NA	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.5345.2.S1_s_at	A	A1TS	POPTR_0006s02950	POPTR_0006s02950 (11)	scaffold_6:1865723-1867092(+) (11)	NA	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.5346.1.S1_at	A	A1TS	POPTR_0008s10020	POPTR_0008s10020 (11)	scaffold_8:6245739-6247011(+) (11)	NA	Q9M5K2	"Dihydrolipoyl dehydrogenase 2, mitochondrial"	AT3G17240.3	lipoamide dehydrogenase 2 	LOC_Os01g22520.1	"dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed"	Medtr8g137840.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
Ptp.5347.1.S1_s_at	A	A1TS	POPTR_0002s20880	POPTR_0002s20880 (11)	scaffold_2:17106955-17107297(-) (11)	NA	P46423	Glutathione S-transferase	AT1G02930.2	glutathione S-transferase 6 	LOC_Os01g70770.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.535.2.S1_at	A	A1TS	POPTR_0002s25390	POPTR_0002s25390 (9)	scaffold_2:22466920-22467097(+) (9)	NA	Q9SZD4	26S proteasome regulatory subunit 4 homolog A	AT4G29040.1	regulatory particle AAA-ATPase 2A 	LOC_Os03g18690.1	"26S protease regulatory subunit 4, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.5350.1.S1_at	A	A1TS	POPTR_0010s07730	POPTR_0010s07730 (11)	scaffold_10:8708232-8708514(-) (11)	NA	Q9SL05	"Protein PROTON GRADIENT REGULATION 5, chloroplastic"	AT2G05620.1	proton gradient regulation 5 	LOC_Os08g45190.1	"PGR5, putative, expressed"	Medtr1g065260.1	"Protein PROTON GRADIENT REGULATION 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5351.1.S1_at	A	A1TS	POPTR_0002s16850	POPTR_0002s16850 (11)	scaffold_2:12605936-12606664(-) (11)	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G01150.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os06g15400.1	expressed protein	Medtr7g143530.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5352.1.S1_at	A	A1TS	POPTR_0003s10410	POPTR_0003s10410 (11)	scaffold_3:11409563-11410010(+) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT1G31420.2	Leucine-rich repeat protein kinase family protein 	LOC_Os03g16010.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g026640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.5353.1.S1_s_at	A	A1TS	POPTR_0001s46010	POPTR_0001s46010 (11)	scaffold_1:46524016-46524667(+) (11)	NA	NA	NA	AT3G51510.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os05g41190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5354.1.S1_at	A	A1TS	POPTR_0010s09740	POPTR_0010s09740 (11)	scaffold_10:10409798-10410319(+) (11)	NA	Q9ZQG8	"Ferredoxin-3, chloroplastic"	AT4G14890.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os03g45710.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr5g006400.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.5356.1.S1_s_at	A	A2TS	POPTR_0012s07890	POPTR_0015s08380 (11)//POPTR_0012s07890 (11)	scaffold_12:8850785-8851310(-) (11)//scaffold_15:9632932-9633474(-) (11)	NA	Q27GI3	Nucleobase-ascorbate transporter 6	AT5G62890.4	Xanthine/uracil permease family protein 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g125300.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.5357.1.S1_at	A	A1TS	POPTR_0003s07970	POPTR_0003s07970 (11)	scaffold_3:9452458-9453132(-) (11)	NA	Q05737	GTP-binding protein YPTM2	AT1G02130.1	RAS 5 	LOC_Os02g43690.1	"ras-related protein, putative, expressed"	Medtr7g093170.1	"Ras GTPase; Sigma-54 factor, interaction region "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5358.1.S1_at	A	A1TS	POPTR_0015s03420	POPTR_0015s03420 (11)	scaffold_15:2951451-2952666(-) (11)	POPTR_0012s05780 (7)	Q3U1Y4	DENN domain-containing protein 4B	AT1G49040.1	stomatal cytokinesis defective / SCD1 protein (SCD1) 	LOC_Os01g39380.1	"SCD1, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.536.1.S1_s_at	A	A1TS	POPTR_0004s19500	POPTR_0004s19500 (11)	scaffold_4:19327559-19327744(-) (11)	NA	Q9ZNU9	Zinc finger A20 and AN1 domain-containing stress-associated protein 3	AT2G27580.2	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g069850.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.5361.1.S1_s_at	A	A1TS	POPTR_0008s05950	POPTR_0008s05950 (11)	scaffold_8:3508440-3508757(+) (11)	NA	P49598	Protein phosphatase 2C 37	AT3G11410.1	protein phosphatase 2CA 	LOC_Os01g62760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5363.1.S1_at	A	A1TS	POPTR_0008s10410	POPTR_0008s10410 (9)	scaffold_8:6519368-6520325(-) (9)	NA	P52046	3-hydroxybutyryl-CoA dehydratase	AT4G16210.1	enoyl-CoA hydratase/isomerase A 	LOC_Os03g19680.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g137400.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.5364.1.S1_s_at	A	A1TS	POPTR_0004s17590	POPTR_0004s17590 (11)	scaffold_4:17728843-17729114(+) (11)	NA	NA	NA	AT4G38770.1	proline-rich protein 4 	LOC_Os10g05750.1	"POEI3 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr4g100690.1	Protein of unknown function DUF1210 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5365.3.A1_s_at	A	A1TS	POPTR_0009s12710	POPTR_0009s12710 (10)	scaffold_9:10322996-10323029(+) (10)	NA	Q944G9	"Probable fructose-bisphosphate aldolase 2, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.5368.1.S1_s_at	A	A1TS	POPTR_0003s08610	POPTR_0003s08610 (11)	scaffold_3:10024932-10025778(+) (11)	NA	NA	NA	AT1G32400.3	tobamovirus multiplication 2A 	LOC_Os08g18044.2	"tetraspanin family protein, putative, expressed"	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.537.1.S1_at	A	A1TS	POPTR_0001s36030	POPTR_0001s36030 (9)	scaffold_1:34511448-34512396(-) (9)	POPTR_0018s05510 (7)	Q9CY21	Uncharacterized methyltransferase WBSCR22	AT5G57280.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g56020.1	"methyltransferase, putative, expressed"	Medtr8g129470.1	"Uncharacterized methyltransferase WBSCR22, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.5372.2.A1_a_at	A	A1TS	POPTR_0008s13500	POPTR_0008s13500 (11)	scaffold_8:8882853-8885747(+) (11)	NA	P33324	CRAL-TRIO domain-containing protein YKL091C	AT1G14820.3	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g70210.1	"CRAL/TRIO domain containing protein, expressed"	Medtr3g151400.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5373.1.S1_s_at	A	A1TS	POPTR_0015s01000	POPTR_0015s01000 (11)	scaffold_15:579817-580460(-) (11)	NA	P40934	Cytochrome b5	AT5G53560.1	cytochrome B5 isoform E 	LOC_Os10g37420.2	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g123330.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.5374.1.A1_at	A	A1TS	POPTR_0003s19210	POPTR_0003s19210 (11)	scaffold_3:18009415-18009582(-) (11)	NA	NA	NA	AT5G07020.1	proline-rich family protein 	LOC_Os02g35090.1	expressed protein	Medtr3g005040.1	"Proline-rich family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5375.1.S1_s_at	A	A1TS	POPTR_0019s08080	POPTR_0019s08080 (11)	scaffold_19:9473832-9473875(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5376.1.S1_at	A	A1TS	POPTR_0011s11020	POPTR_0011s11020 (11)	scaffold_11:13717928-13718075(-) (11)	NA	P16273	Pathogen-related protein	AT1G78780.2	pathogenesis-related family protein 	LOC_Os01g53090.1	"pathogen-related protein, putative, expressed"	Medtr8g068150.1	"Pathogen-related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5378.1.S1_s_at	A	A1TS	POPTR_0018s10460	POPTR_0018s10460 (11)	scaffold_18:11379842-11381283(+) (11)	NA	Q9FKK7	Xylose isomerase	AT5G57655.2	xylose isomerase family protein 	LOC_Os07g47290.1	"xylose isomerase, putative, expressed"	Medtr8g128270.1	Xylose isomerase-like TIM barrel; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5379.1.S1_at	A	A1TS	POPTR_0001s40960	POPTR_0001s40960 (11)	scaffold_1:40528178-40531957(-) (11)	NA	NA	NA	AT5G53860.2	embryo defective 2737 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.538.1.S1_s_at	A	A1TS	POPTR_0008s19910	POPTR_0008s19910 (11)	scaffold_8:13759152-13760572(+) (11)	NA	NA	NA	AT3G17900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g05812.3	expressed protein	Medtr5g039480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5380.1.S1_at	A	A1TS	POPTR_0002s03900	POPTR_0002s03900 (11)	scaffold_2:2444559-2445059(-) (11)	NA	NA	NA	AT1G06200.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os04g01240.1	"serine-type peptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5382.1.S1_s_at	A	A1TS	POPTR_0002s10480	POPTR_0002s10480 (11)	scaffold_2:7562887-7562988(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G09750.1	Eukaryotic aspartyl protease family protein 	LOC_Os03g08790.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g149190.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5383.1.S1_at	A	A1TS	POPTR_0016s06670	POPTR_0016s06670 (11)	scaffold_16:4484201-4484425(+) (11)	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.3	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5384.1.S1_s_at	A	A1TS	POPTR_0003s16760	POPTR_0003s16760 (11)	scaffold_3:16293510-16293816(+) (11)	NA	NA	NA	AT1G24265.2	Protein of unknown function (DUF1664) 	LOC_Os01g01070.2	expressed protein	Medtr7g022170.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5385.1.S1_at	A	A1TS	POPTR_0010s19580	POPTR_0010s19580 (11)	scaffold_10:17467447-17468819(+) (11)	NA	Q9GZU7	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5386.1.S1_s_at	A	A1TS	POPTR_0006s14630	POPTR_0006s14630 (11)	scaffold_6:11989680-11990117(-) (11)	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
Ptp.5388.1.S1_at	A	A1TS	POPTR_0005s06870	POPTR_0005s06870 (9)	scaffold_5:4612754-4613832(-) (9)	NA	Q9FY89	Vacuolar protein sorting-associated protein 20 homolog 2	AT5G09260.1	vacuolar protein sorting-associated protein 20.2 	LOC_Os02g38300.1	"SNF7 domain containing protein, putative, expressed"	Medtr3g142880.1	Snf7 	GO:0015031|protein transport	NA	NA
Ptp.5389.1.S1_at	A	A1TS	POPTR_0015s03910	POPTR_0015s03910 (11)	scaffold_15:3829136-3829673(-) (11)	NA	P82353	Non-specific lipid-transfer protein 2	AT3G18280.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g47700.1	"LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g096400.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5389.1.S1_x_at	A	A1TS	POPTR_0015s03910	POPTR_0015s03910 (11)	scaffold_15:3829124-3829673(-) (11)	NA	P82353	Non-specific lipid-transfer protein 2	AT3G18280.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g47700.1	"LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g096400.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5392.1.S1_at	A	A1TS	POPTR_0006s25990	POPTR_0006s25990 (11)	scaffold_6:24278862-24279850(-) (11)	NA	Q8LFH7	60S ribosomal protein L37-1	AT1G15250.1	Zinc-binding ribosomal protein family protein 	LOC_Os02g56990.1	"ribosomal protein L37, putative, expressed"	Medtr4g009180.1	Ribosomal protein L37e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5393.1.S1_s_at	A	A1TS	POPTR_0004s18400	POPTR_0004s18400 (11)	scaffold_4:18311964-18312515(+) (11)	NA	Q9SZN1	V-type proton ATPase subunit B2	AT4G38510.5	"ATPase, V1 complex, subunit B protein "	LOC_Os01g51380.2	"ATP synthase, putative, expressed"	Medtr7g092560.1	ATPase FliI/YscN 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.5394.1.S1_at	A	A1TS	POPTR_0005s11950	POPTR_0005s11950 (11)	scaffold_5:8721285-8721728(-) (11)	NA	Q42600	Cytochrome P450 84A1	AT4G36220.1	ferulic acid 5-hydroxylase 1 	LOC_Os10g36848.1	"cytochrome P450, putative, expressed"	Medtr5g021320.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.5399.1.S1_at	A	A1TS	POPTR_0014s07670	POPTR_0014s07670 (11)	scaffold_14:5747153-5748222(-) (11)	POPTR_0002s15870 (6)	P29675	Pollen-specific protein SF3	AT1G01780.1	GATA type zinc finger transcription factor family protein 	LOC_Os02g42820.1	"OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.540.1.S1_at	A	A1TS	POPTR_0002s25080	POPTR_0002s25080 (10)	scaffold_2:22274081-22274213(+) (10)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT3G25290.2	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr7g046190.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.540.1.S1_s_at	A	A1TS	POPTR_0002s25080	POPTR_0002s25080 (11)	scaffold_2:22274234-22274500(+) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT3G25290.2	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr7g046190.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5401.1.S1_at	A	A1TS	POPTR_0003s08740	POPTR_0003s08740 (11)	scaffold_3:10132719-10133058(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5402.1.S1_at	A	A1TS	POPTR_0013s04510	POPTR_0013s04510 (9)	scaffold_13:3097264-3097626(-) (9)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.5403.1.S1_at	A	A1TS	POPTR_0010s19490	POPTR_0010s19490 (9)	scaffold_10:17371754-17372121(-) (9)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5404.1.S1_s_at	A	A2TS	POPTR_0004s03550	POPTR_0011s04360 (11)//POPTR_0004s03550 (11)	scaffold_11:4362201-4362681(-) (11)//scaffold_4:2460132-2460612(-) (11)	NA	Q9S9T7	Vacuolar protein sorting-associated protein 28 homolog 2	AT4G05000.2	Vacuolar protein sorting-associated protein VPS28 family protein 	LOC_Os01g57260.1	"vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed"	Medtr4g125370.1	"Vacuolar protein sorting-associated, VPS28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5407.1.S1_at	A	A1TS	POPTR_0014s04400	POPTR_0014s04400 (10)	scaffold_14:3426669-3427223(+) (10)	NA	NA	NA	AT1G02180.1	ferredoxin-related 	LOC_Os02g58740.1	expressed protein	Medtr8g009050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5408.1.S1_s_at	A	A1TS	POPTR_0005s18550	POPTR_0005s18550 (11)	scaffold_5:16802677-16803275(+) (11)	NA	Q9FGQ7	Cyclin-D3-2	AT5G67260.1	CYCLIN D3;2 	LOC_Os07g42860.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.5409.1.S1_at	A	A1TS	POPTR_0017s13530	POPTR_0017s13530 (9)	scaffold_17:13642544-13651931(+) (9)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5410.1.S1_at	A	A1TS	POPTR_0019s08100	POPTR_0019s08100 (11)	scaffold_19:9523707-9524101(+) (11)	NA	Q9FFE0	Regulator of ribonuclease-like protein 2	AT5G16450.2	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os01g52460.2	"regulator of ribonuclease, putative, expressed"	Medtr7g089680.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5410.1.S1_s_at	A	A1TS	POPTR_0019s08100	POPTR_0019s08100 (11)	scaffold_19:9523895-9524112(+) (11)	NA	Q9FFE0	Regulator of ribonuclease-like protein 2	AT5G16450.2	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os01g52460.2	"regulator of ribonuclease, putative, expressed"	Medtr7g089680.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5412.1.S1_at	A	A1TS	POPTR_0004s21050	POPTR_0004s21050 (11)	scaffold_4:20344591-20346414(+) (11)	NA	NA	NA	AT5G22280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g33290.2	expressed protein	Medtr2g107420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5413.1.S1_at	A	A1TS	POPTR_0017s00520	POPTR_0017s00520 (11)	scaffold_17:202080-202178(+) (11)	NA	O80585	Methylenetetrahydrofolate reductase 2	AT2G44160.1	methylenetetrahydrofolate reductase 2 	LOC_Os03g60090.1	"methylenetetrahydrofolate reductase, putative, expressed"	Medtr1g047280.1	Methylenetetrahydrofolate reductase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0055114|oxidation reduction||GO:0006555|methionine metabolic process||GO:0044281|small molecule metabolic process	GO:0004489|methylenetetrahydrofolate reductase (NADPH) activity	NA
Ptp.5413.1.S1_s_at	A	A1TS	POPTR_0017s00520	POPTR_0017s00520 (11)	scaffold_17:201507-202286(+) (11)	POPTR_0007s00200 (6)	O80585	Methylenetetrahydrofolate reductase 2	AT2G44160.1	methylenetetrahydrofolate reductase 2 	LOC_Os03g60090.1	"methylenetetrahydrofolate reductase, putative, expressed"	Medtr1g047280.1	Methylenetetrahydrofolate reductase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0055114|oxidation reduction||GO:0006555|methionine metabolic process||GO:0044281|small molecule metabolic process	GO:0004489|methylenetetrahydrofolate reductase (NADPH) activity	NA
Ptp.5414.1.S1_at	A	A1TS	POPTR_0010s20100	POPTR_0010s20100 (11)	scaffold_10:17836221-17837651(+) (11)	NA	P29675	Pollen-specific protein SF3	AT3G55770.5	GATA type zinc finger transcription factor family protein 	LOC_Os03g15940.1	"OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.5414.2.S1_s_at	A	A2TS	POPTR_0008s06400	POPTR_0008s06400 (11)//POPTR_0010s20100 (11)	scaffold_10:17835243-17836159(+) (11)//scaffold_8:3799043-3799982(-) (11)	NA	P29675	Pollen-specific protein SF3	AT3G55770.5	GATA type zinc finger transcription factor family protein 	LOC_Os03g15940.1	"OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.5415.1.S1_a_at	A	A1TS	POPTR_0006s13850	POPTR_0006s13850 (11)	scaffold_6:11033668-11035165(+) (11)	NA	Q39290	"DNA-directed RNA polymerases I, II, and III subunit RPABC5"	AT1G61700.1	RNA polymerases N / 8 kDa subunit 	LOC_Os11g08940.1	"RNA polymerases N 8 kDa subunit, putative"	Medtr5g035350.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006351|""transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.5416.1.S1_s_at	A	A1TS	POPTR_0002s25260	POPTR_0002s25260 (11)	scaffold_2:22389385-22389448(-) (11)	NA	Q9LV66	Uncharacterized protein At5g48480	AT5G48480.1	Lactoylglutathione lyase / glyoxalase I family protein 	NA	NA	Medtr7g045650.1	"early tobacco anther 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5416.2.S1_at	A	A1MS	POPTR_0002s25260	POPTR_0002s25260 (10)	scaffold_2:22389135-22389252(-) (10)	NA	Q9LV66	Uncharacterized protein At5g48480	AT5G48480.1	Lactoylglutathione lyase / glyoxalase I family protein 	NA	NA	Medtr7g045650.1	"early tobacco anther 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5417.2.S1_at	A	A1TS	POPTR_0016s12370	POPTR_0016s12370 (11)	scaffold_16:11714229-11714439(+) (11)	NA	Q39963	Probable pyridoxal biosynthesis protein PDX1	AT5G01410.1	Aldolase-type TIM barrel family protein 	LOC_Os11g48080.1	"SOR/SNZ family protein, putative, expressed"	Medtr2g021510.1	Vitamin B6 biosynthesis protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5418.1.S1_at	A	A1TS	POPTR_0018s01050	POPTR_0018s01050 (10)	scaffold_18:984680-985330(+) (10)	NA	NA	NA	AT2G25660.1	embryo defective 2410 	LOC_Os01g08420.1	"EMB2410, putative, expressed"	Medtr3g136060.1	"EMB2410, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5419.1.S1_at	A	A1TS	POPTR_0005s20370	POPTR_0005s20370 (10)	scaffold_5:19405519-19407097(-) (10)	POPTR_0002s08060 (7)//POPTR_0002s08030 (6)	P35249	Replication factor C subunit 4	AT1G21690.1	ATPase family associated with various cellular activities (AAA)  	LOC_Os12g07720.1	"RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed"	Medtr3g100710.1	"AAA ATPase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
Ptp.5420.1.S1_at	A	A1TS	POPTR_0003s12960	POPTR_0003s12960 (11)	scaffold_3:13376206-13376844(-) (11)	NA	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.5420.1.S1_s_at	A	A3TS	POPTR_0001s09600	POPTR_0743s00200 (11)//POPTR_0003s12960 (11)//POPTR_0001s09600 (11)	scaffold_1:7307641-7307947(-) (11)//scaffold_3:13376349-13376660(-) (11)//scaffold_743:1138-1444(+) (11)	NA	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.5423.1.A1_at	A	A1TS	POPTR_0002s10250	POPTR_0002s10250 (11)	scaffold_2:7353681-7354647(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G65380.1	MATE efflux family protein 	LOC_Os03g08900.1	"MATE efflux family protein, putative, expressed"	Medtr3g150100.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
Ptp.5425.1.S1_s_at	A	A1TS	POPTR_0009s09520	POPTR_0009s09520 (11)	scaffold_9:8383681-8385365(-) (11)	NA	O74503	Upstream activation factor subunit spp27	AT2G14880.1	SWIB/MDM2 domain superfamily protein 	LOC_Os12g32280.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5427.1.A1_s_at	A	A1TS	POPTR_0001s00360	POPTR_0001s00360 (11)	scaffold_1:251903-255680(+) (11)	NA	Q43199	Adenine phosphoribosyltransferase 1	AT4G12440.2	adenine phosphoribosyl transferase 4 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.5428.1.S1_at	A	A1TS	POPTR_0013s14390	POPTR_0013s14390 (11)	scaffold_13:14604068-14604154(-) (11)	NA	Q8VYN2	Vesicle-associated protein 4-2	AT4G21450.1	PapD-like superfamily protein 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
Ptp.5429.2.S1_s_at	A	A1TS	POPTR_0008s15610	POPTR_0008s15610 (11)	scaffold_8:10390007-10392096(-) (11)	NA	Q8GTE3	40S ribosomal protein S3a	AT4G34670.1	Ribosomal protein S3Ae 	LOC_Os02g18550.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5434.1.A1_at	A	A1TS	POPTR_0006s15780	POPTR_0006s15780 (11)	scaffold_6:13433256-13434116(-) (11)	NA	Q8VZU9	Derlin-1	AT4G29330.1	DERLIN-1 	LOC_Os05g09550.1	"Der1-like family domain containing protein, expressed"	Medtr4g160130.1	Der1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5435.1.A1_at	A	A1TS	POPTR_0013s09660	POPTR_0013s09660 (11)	scaffold_13:9500858-9501325(-) (11)	NA	P91924	ADP-ribosylation factor	AT5G17060.1	ADP-ribosylation factor B1B 	LOC_Os10g42940.1	"miro, putative, expressed"	Medtr4g106940.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5436.1.S1_s_at	A	A2TS	POPTR_0014s07630	POPTR_0014s07630 (11)//POPTR_0014s07610 (10)	scaffold_14:5712275-5720771(+) (11)//scaffold_14:5719754-5721011(+) (10)	NA	Q1W374	Phosphomannomutase	AT2G45790.1	phosphomannomutase 	LOC_Os04g58580.1	"phosphomannomutase, putative, expressed"	Medtr7g084420.1	Eukaryotic phosphomannomutase 	GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0019307|mannose biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004615|phosphomannomutase activity	GO:0005737|cytoplasm
Ptp.5438.1.S1_at	A	A1TS	POPTR_0017s08060	POPTR_0017s08060 (11)	scaffold_17:6464475-6465399(+) (11)	NA	O04866	"Acetylornithine aminotransferase, mitochondrial"	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.5439.1.A1_at	A	A1TS	POPTR_1554s00200	POPTR_1554s00200 (11)	scaffold_1554:1122-1561(+) (11)	POPTR_0006s03300 (6)	NA	NA	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5440.1.S1_at	A	A1TS	POPTR_0009s01630	POPTR_0009s01630 (11)	scaffold_9:2161822-2162543(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT2G28315.1	Nucleotide/sugar transporter family protein 	LOC_Os02g41780.1	"transporter-related, putative, expressed"	Medtr2g110080.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5440.2.A1_a_at	A	A1TS	POPTR_0009s01630	POPTR_0009s01630 (10)	scaffold_9:2160650-2160956(+) (10)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT2G28315.1	Nucleotide/sugar transporter family protein 	LOC_Os02g41780.1	"transporter-related, putative, expressed"	Medtr2g110080.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5441.1.S1_s_at	A	A1TS	POPTR_0003s02640	POPTR_0003s02640 (11)	scaffold_3:2741589-2741991(+) (11)	NA	Q99PV0	Pre-mRNA-processing-splicing factor 8	AT1G80070.1	Pre-mRNA-processing-splicing factor 	LOC_Os05g07050.1	"pre-mRNA-processing-splicing factor 8, putative, expressed"	Medtr2g126650.1	"Mov34/MPN/PAD-1; PRO8NT; PROCN; PRO, C-terminal "	"GO:0044260|cellular macromolecule metabolic process||GO:0000398|""nuclear mRNA splicing, via spliceosome"""	NA	GO:0005681|spliceosomal complex
Ptp.5442.1.S1_at	A	A1TS	POPTR_0001s09690	POPTR_0001s09690 (11)	scaffold_1:7409587-7410914(+) (11)	NA	NA	NA	AT1G63830.3	PLAC8 family protein 	LOC_Os03g03180.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5442.1.S1_s_at	A	A2TS	POPTR_0001s09690	POPTR_0003s13070 (11)//POPTR_0001s09690 (11)	scaffold_1:7409704-7410932(+) (11)//scaffold_3:13470904-13473161(+) (11)	NA	NA	NA	AT1G63830.3	PLAC8 family protein 	LOC_Os03g03180.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5443.1.S1_s_at	A	A2TS	POPTR_0011s01970	POPTR_0011s02000 (11)//POPTR_0011s01970 (11)	scaffold_11:1631505-1632634(-) (11)//scaffold_11:1668255-1669406(-) (11)	NA	Q41141	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta	AT1G12000.1	Phosphofructokinase family protein 	LOC_Os06g13810.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed"	Medtr8g147360.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5444.1.S1_at	A	A1TS	POPTR_0018s01420	POPTR_0018s01420 (11)	scaffold_18:1362656-1362814(+) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5444.1.S1_x_at	A	A1TS	POPTR_0018s01420	POPTR_0018s01420 (11)	scaffold_18:1362649-1362814(+) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5445.1.A1_at	A	A1TS	POPTR_0004s01820	POPTR_0004s01820 (11)	scaffold_4:1093228-1093605(-) (11)	NA	NA	NA	AT4G21780.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr8g146510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5446.1.S1_s_at	A	A1TS	POPTR_0014s13600	POPTR_0014s13600 (11)	scaffold_14:9988291-9988442(-) (11)	NA	NA	NA	AT1G52140.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g70500.1	expressed protein	Medtr7g099480.1	"disease resistance gene, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5447.1.S1_at	A	A1TS	POPTR_0005s22530	POPTR_0005s22530 (11)	scaffold_5:21454330-21456007(-) (11)	NA	NA	NA	AT3G59090.1	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os01g54784.1	expressed protein	Medtr4g165460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5449.2.S1_a_at	A	A1TS	POPTR_0001s13890	POPTR_0001s13890 (10)	scaffold_1:10951097-10951490(-) (10)	NA	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.545.1.S1_at	A	A1TS	POPTR_0005s17550	POPTR_0005s17550 (11)	scaffold_5:15124563-15124802(-) (11)	NA	Q8VXX9	Bet1-like protein At4g14600	AT4G14600.1	Target SNARE coiled-coil domain protein 	LOC_Os07g38990.1	expressed protein	Medtr5g074660.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5451.1.S1_at	A	A1TS	POPTR_0006s09610	POPTR_0006s09610 (10)	scaffold_6:7060346-7060385(-) (10)	NA	P18025	Tubulin beta-1 chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5451.1.S1_s_at	A	A1TS	POPTR_0006s09610	POPTR_0006s09610 (11)	scaffold_6:7059656-7060067(-) (11)	POPTR_0016s11660 (8)	P18025	Tubulin beta-1 chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5452.2.S1_at	A	A1MS	POPTR_0010s15850	POPTR_0010s15850 (11)	scaffold_10:14952181-14952428(-) (11)	NA	Q1ZXH4	Transmembrane protein 93 homolog	AT5G49540.1	Rab5-interacting family protein 	LOC_Os01g49026.1	"transmembrane protein 93, putative, expressed"	Medtr2g037740.1	Protein of unknown function DUF786 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5453.1.S1_s_at	A	A1TS	POPTR_0009s02050	POPTR_0009s02050 (10)	scaffold_10:11835931-11836071(-) (9)//scaffold_8:129654-129794(-) (9)//scaffold_9:2678597-2678738(+) (10)	POPTR_0008s00360 (7)	NA	NA	AT3G45600.1	tetraspanin3 	LOC_Os05g03140.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.5457.1.S1_at	A	A1TS	POPTR_0005s10420	POPTR_0005s10420 (11)	scaffold_5:7475330-7475811(-) (11)	NA	Q5E9J1	Heterogeneous nuclear ribonucleoprotein F	AT5G66010.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g03890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g088030.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; RNA-binding region RNP-1 (RNA recognition motif) "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5458.1.S1_at	A	A1TS	POPTR_0017s01760	POPTR_0017s01760 (11)	scaffold_17:1277288-1277416(+) (11)	NA	NA	NA	AT1G65720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g34270.1	expressed protein	Medtr3g086200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5458.1.S1_s_at	A	A1MS	POPTR_0017s01760	POPTR_0017s01760 (11)	scaffold_17:1277467-1277819(+) (11)	NA	NA	NA	AT1G65720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g34270.1	expressed protein	Medtr3g086200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5459.1.S1_at	A	A1TS	POPTR_0003s20870	POPTR_0003s20870 (11)	scaffold_3:19258638-19258818(+) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5460.1.S1_at	A	A1TS	POPTR_0006s01740	POPTR_0006s01740 (11)	scaffold_6:1068587-1069194(-) (11)	NA	NA	NA	AT4G16450.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. "	LOC_Os08g33460.1	expressed protein	Medtr2g030480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5462.1.S1_at	A	A1TS	POPTR_0019s07580	POPTR_0019s07580 (11)	scaffold_19:8647949-8649772(+) (11)	NA	NA	NA	AT1G08580.1	unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os02g39180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5464.1.S1_s_at	A	A1TS	POPTR_0016s11750	POPTR_0016s11750 (11)	scaffold_16:10933461-10933811(-) (11)	NA	Q9M392	Reticulon-like protein B12	AT3G54120.1	Reticulon family protein 	LOC_Os01g63240.1	"reticulon domain containing protein, putative, expressed"	Medtr4g012120.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.5468.2.A1_a_at	A	A1TS	POPTR_0001s34900	POPTR_0001s34900 (11)	scaffold_1:33120651-33121649(-) (11)	NA	NA	NA	AT5G59710.1	VIRE2 interacting protein 2 	LOC_Os03g52594.3	"CCR4-NOT transcription factor, putative, expressed"	Medtr2g114150.1	NOT2/NOT3/NOT5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.5469.1.S1_s_at	A	A1TS	POPTR_0002s10840	POPTR_0002s10840 (11)	scaffold_2:7869673-7870896(+) (11)	NA	Q9SXC8	Ubiquitin-fold modifier-conjugating enzyme 1	AT1G27530.1	"CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). "	LOC_Os10g13800.2	"ufm1-conjugating enzyme 1, putative, expressed"	Medtr3g127760.1	Protein of unknown function DUF1782 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5470.2.S1_at	A	A1TS	POPTR_0014s08880	POPTR_0014s08880 (10)	scaffold_14:6553333-6553397(-) (10)	NA	O49354	"Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial"	AT2G30920.1	coenzyme Q 3 	LOC_Os06g05900.1	"methyltransferase, putative, expressed"	Medtr5g099200.1	Ubiquinone biosynthesis O-methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.5470.2.S1_s_at	A	A1TS	POPTR_0014s08880	POPTR_0014s08880 (11)	scaffold_14:6551039-6553143(-) (11)	NA	O49354	"Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial"	AT2G30920.1	coenzyme Q 3 	LOC_Os06g05900.1	"methyltransferase, putative, expressed"	Medtr5g099200.1	Ubiquinone biosynthesis O-methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.5471.1.S1_s_at	A	A1TS	POPTR_0008s22310	POPTR_0008s22310 (11)	scaffold_8:16702580-16703076(-) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099870.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.5471.2.S1_at	A	A1TA	POPTR_0010s16330	POPTR_0010s16330 (9)	scaffold_10:15295877-15295969(-) (9)	NA	A9PEK8	S-adenosylmethionine synthase 3	AT1G02500.2	S-adenosylmethionine synthetase 1 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.5474.1.S1_at	A	A1TS	POPTR_0004s00800	POPTR_0004s00800 (11)	scaffold_4:365881-366014(-) (11)	NA	Q9Z2Y8	Proline synthase co-transcribed bacterial homolog protein	AT1G11930.2	"Predicted pyridoxal phosphate-dependent enzyme, YBL036C type "	LOC_Os05g05740.1	"proline synthetase co-transcribed bacterial homolog protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5478.1.S1_s_at	A	A1TS	POPTR_0004s23460	POPTR_0004s23460 (11)	scaffold_4:22180206-22180293(+) (11)	NA	Q8GWR3	KH domain-containing protein At1g09660	AT1G09660.1	RNA-binding KH domain-containing protein 	LOC_Os01g66300.1	"KH domain containing protein, putative, expressed"	Medtr2g005410.2	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.548.1.S1_at	A	A1TS	POPTR_0001s38120	POPTR_0001s38120 (9)	scaffold_1:37199853-37200121(+) (10)	NA	Q6AST1	Homeobox-leucine zipper protein HOX32	AT2G34710.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.1	"START domain containing protein, expressed"	Medtr2g129600.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.548.1.S1_x_at	A	A1TS	POPTR_0001s38120	POPTR_0001s38120 (10)	scaffold_1:37199332-37200120(+) (11)	NA	Q6AST1	Homeobox-leucine zipper protein HOX32	AT2G34710.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.1	"START domain containing protein, expressed"	Medtr2g129600.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.5480.1.S1_at	A	A1TS	POPTR_0012s09220	POPTR_0012s09220 (11)	scaffold_12:10273386-10273911(+) (11)	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5483.2.S1_a_at	A	A1TS	POPTR_0004s09860	POPTR_0004s09860 (10)	scaffold_4:8378986-8379350(-) (10)	NA	NA	NA	AT1G67080.1	abscisic acid (aba)-deficient 4 	LOC_Os01g03750.1	expressed protein	Medtr6g017810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5487.1.S1_at	A	A1TS	POPTR_0010s09630	POPTR_0010s09630 (11)	scaffold_10:10370205-10371959(+) (11)	NA	NA	NA	AT1G05430.1	unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g29514.1	expressed protein	Medtr5g006520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5488.1.S1_at	A	A1TS	POPTR_0017s08110	POPTR_0017s08110 (10)	scaffold_17:6507803-6509288(-) (10)	NA	NA	NA	AT1G15800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 56 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g137930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5489.2.A1_a_at	A	A1TS	POPTR_0016s14240	POPTR_0016s14240 (11)	scaffold_16:13495832-13496356(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G01850.1	Protein kinase superfamily protein 	LOC_Os03g60150.1	"protein kinase domain containing protein, expressed"	Medtr7g080080.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.549.1.A1_a_at	A	A1TS	POPTR_0008s13320	POPTR_0008s13320 (11)	scaffold_8:8750420-8750869(+) (11)	NA	Q9BZV1	UBX domain-containing protein 6	AT2G01650.1	plant UBX domain-containing protein 2 	LOC_Os09g23690.1	"UBX domain containing protein, expressed"	Medtr4g157470.1	"UBX; PUG; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5491.1.S1_at	A	A1TS	POPTR_0004s08600	POPTR_0004s08600 (11)	scaffold_4:7153052-7153563(-) (11)	NA	NA	NA	AT5G16720.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5491.2.S1_a_at	A	A1TS	POPTR_0004s08600	POPTR_0004s08600 (11)	scaffold_4:7153863-7154137(-) (11)	NA	NA	NA	AT5G16720.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5492.2.S1_s_at	A	A1TS	POPTR_0006s27630	POPTR_0006s27630 (11)	scaffold_6:25473010-25473171(-) (11)	NA	NA	NA	AT4G32020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5492.3.S1_s_at	A	A1TS	POPTR_0006s27630	POPTR_0006s27630 (11)	scaffold_6:25473314-25473662(-) (11)	NA	NA	NA	AT4G32020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5493.1.S1_s_at	A	A1TS	POPTR_0014s01910	POPTR_0014s01910 (9)	scaffold_14:1736923-1737385(+) (9)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.5495.1.S1_at	A	A1TS	POPTR_0003s04610	POPTR_0003s04610 (11)	scaffold_3:5472985-5475225(+) (11)	NA	Q9M7N0	Profilin-3	AT4G29340.1	profilin 4 	LOC_Os10g17680.1	"profilin domain containing protein, expressed"	Medtr4g160100.1	Plant profilin 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	GO:0015629|actin cytoskeleton
Ptp.5496.1.S1_at	A	A1TS	POPTR_0006s13320	POPTR_0006s13320 (11)	scaffold_6:10538036-10540130(+) (11)	NA	Q9Z137	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2	AT2G37090.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g17850.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr7g120990.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
Ptp.5497.1.A1_at	A	A1TS	POPTR_0004s22360	POPTR_0004s22360 (11)	scaffold_4:21292752-21292822(+) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT2G28060.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os09g20010.2	"SNF1-related protein kinase regulatory subunit beta-2, putative, expressed"	AC235487_26.1	"5-AMP-activated protein kinase, beta subunit, complex-interacting region AC235487.1 128441-124122 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5497.2.S1_s_at	A	A3TS	POPTR_0017s00310	POPTR_0017s00640 (11)//POPTR_0017s00690 (11)//POPTR_0017s00310 (11)	scaffold_17:82392-84251(+) (11)//scaffold_17:369997-371859(-) (11)//scaffold_17:389089-390935(-) (11)//scaffold_17:2661064-2662925(-) (9)	POPTR_0017s03610 (8)	Q6WAU0	(+)-pulegone reductase	AT1G26320.1	Zinc-binding dehydrogenase family protein 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.5498.1.S1_s_at	A	A1TS	POPTR_0004s16970	POPTR_0004s16970 (11)	scaffold_4:17346528-17346873(+) (11)	NA	Q54NP8	Kinesin-related protein 4	AT2G21300.2	ATP binding microtubule motor family protein 	LOC_Os02g43130.1	"kinesin motor domain containing protein, expressed"	Medtr4g097240.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.5500.1.S1_at	A	A1TS	POPTR_0006s23880	POPTR_0006s23880 (11)	scaffold_6:22606632-22607528(+) (11)	NA	Q9S7X6	Thermospermine synthase ACAULIS5	AT5G19530.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g14190.1	"spermidine synthase, putative, expressed"	Medtr5g006230.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.5502.2.S1_at	A	A1TS	POPTR_0009s05420	POPTR_0009s05420 (11)	scaffold_9:5531176-5531253(+) (11)	NA	Q9LJZ5	Ubiquitin-conjugating enzyme E2 19	AT3G20060.1	ubiquitin-conjugating enzyme19 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g103970.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.5503.1.S1_at	A	A1TS	POPTR_0012s00200	POPTR_0012s00200 (9)	scaffold_12:2702-2916(+) (9)	NA	Q9URX1	UNC93-like protein C922.05c	AT1G18010.1	Major facilitator superfamily protein 	LOC_Os04g01520.1	expressed protein	Medtr3g122110.1	"Protein of unknown function DUF895, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5504.1.S1_at	A	A1TS	POPTR_0012s04470	POPTR_0012s04470 (10)	scaffold_12:3713671-3713985(+) (10)	NA	Q9C6B8	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.2	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.5505.1.S1_at	A	A1TS	POPTR_0001s29390	POPTR_0001s29390 (11)	scaffold_1:28092138-28092838(-) (11)	NA	Q04212	D-arabinose 1-dehydrogenase	AT4G33670.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os12g29760.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g121930.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5507.1.S1_at	A	A2TS	POPTR_0014s08800	POPTR_0014s08800 (10)//POPTR_0002s16750 (9)	scaffold_14:6510764-6511882(+) (10)//scaffold_2:12515020-12516074(+) (9)	NA	Q8S8M5	Protein ABIL1	AT2G46225.1	ABI-1-like 1 	LOC_Os01g43420.1	expressed protein	Medtr7g143400.1	"Protein ABIL2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5508.1.S1_s_at	A	A1TS	POPTR_0018s09380	POPTR_0018s09380 (11)	scaffold_18:10281387-10281990(+) (11)	NA	P34105	NADP-dependent malic enzyme	AT1G79750.1	NADP-malic enzyme 4 	LOC_Os01g52500.3	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.5510.1.S1_at	A	A1TS	POPTR_0002s22290	POPTR_0002s22290 (11)	scaffold_2:18987910-18988325(+) (11)	NA	Q4KLL4	Transmembrane 9 superfamily member 4	AT4G12650.1	Endomembrane protein 70 protein family 	LOC_Os08g38820.2	"transmembrane 9 superfamily member, putative, expressed"	Medtr3g107100.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
Ptp.5513.1.S1_s_at	A	A1TS	POPTR_0010s19860	POPTR_0010s19860 (11)	scaffold_10:17646571-17646607(+) (11)	NA	O04204	60S acidic ribosomal protein P0-1	AT2G40010.1	Ribosomal protein L10 family protein 	LOC_Os08g03640.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr5g089540.1	Ribosomal protein L10; Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0042254|ribosome biogenesis||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5514.2.S1_a_at	A	A1TS	POPTR_0004s09890	POPTR_0004s09890 (11)	scaffold_4:8402739-8403031(+) (11)	NA	NA	NA	AT5G16110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5514.2.S1_at	A	A1TS	POPTR_0004s09890	POPTR_0004s09890 (11)	scaffold_4:8402150-8403227(+) (11)	NA	NA	NA	AT5G16110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5514.3.S1_a_at	A	A1TS	POPTR_0004s09890	POPTR_0004s09890 (11)	scaffold_4:8403362-8403602(+) (11)	NA	NA	NA	AT5G16110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5515.1.A1_s_at	A	A1TS	POPTR_0009s04790	POPTR_0009s04790 (11)	scaffold_9:5056737-5057244(+) (11)	NA	NA	NA	AT1G07310.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5516.1.A1_at	A	A1TS	POPTR_0003s08330	POPTR_0003s08330 (11)	scaffold_3:9717235-9718654(+) (11)	NA	Q944A9	Novel plant SNARE 11	AT2G35190.1	novel plant snare 11 	LOC_Os06g50120.2	"novel plant SNARE 11, putative, expressed"	Medtr8g134080.1	Target SNARE coiled-coil region; Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5517.1.S1_a_at	A	A1TS	POPTR_0012s14510	POPTR_0012s14510 (11)	scaffold_12:14373770-14374103(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5517.2.A1_at	A	A1TS	POPTR_0004s21180	POPTR_0004s21180 (11)	scaffold_4:20411511-20411731(-) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.5517.3.A1_at	A	A1TS	POPTR_0008s17490	POPTR_0008s17490 (10)	scaffold_8:11758820-11761972(-) (10)	NA	NA	NA	AT3G23980.1	BLISTER 	LOC_Os01g68380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5518.1.S1_s_at	A	A1TS	POPTR_0009s15160	POPTR_0009s15160 (11)	scaffold_9:11769059-11769481(+) (11)	NA	Q6V9I6	Histone deacetylase HDT1	AT3G44750.2	histone deacetylase 3 	LOC_Os05g51830.1	"ZOS5-12 - C2H2 zinc finger protein, expressed"	Medtr4g073420.1	"Histone deacetylase HDT1, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5519.1.S1_s_at	A	A1TS	POPTR_0018s03000	POPTR_0018s03000 (11)	scaffold_18:2640387-2640960(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g48860.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.552.1.S1_at	A	A1TS	POPTR_0010s00610	POPTR_0010s00610 (11)	scaffold_10:325782-327139(-) (11)	NA	O34598	Guanine deaminase	AT5G28050.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os03g61810.1	"tRNA-specific adenosine deaminase, putative, expressed"	Medtr8g133690.1	"CMP/dCMP deaminase, zinc-binding "	NA	GO:0016787|hydrolase activity||GO:0008270|zinc ion binding	NA
Ptp.5523.1.S1_at	A	A1TS	POPTR_0005s27440	POPTR_0005s27440 (11)	scaffold_5:25115059-25116479(-) (11)	NA	NA	NA	AT1G20770.1	unknown protein; Has 59 Blast hits to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g43040.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5528.2.A1_at	A	A1TA	POPTR_0006s02230	POPTR_0006s02230 (10)	scaffold_6:1464849-1465012(+) (10)	NA	Q05462	60S ribosomal protein L27	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os10g41470.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5529.1.S1_s_at	A	A1TS	POPTR_0010s15150	POPTR_0010s15150 (11)	scaffold_10:14498239-14498590(-) (11)	NA	Q9LSP9	Chitinase-like protein 2	AT3G16920.1	chitinase-like protein 2 	LOC_Os09g32080.2	"CHIT13 - Chitinase family protein precursor, expressed"	Medtr2g038810.1	"Glycoside hydrolase, family 19 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
Ptp.5530.1.S1_at	A	A1TS	POPTR_0001s17170	POPTR_0001s17170 (10)	scaffold_1:14016959-14018750(+) (10)	NA	Q9FUZ0	"Peptide deformylase 1A, chloroplastic"	AT1G15390.1	peptide deformylase 1A 	LOC_Os01g37510.1	"peptide deformylase, putative, expressed"	Medtr2g126050.1	Formylmethionine deformylase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
Ptp.5530.1.S1_s_at	A	A1TS	POPTR_0001s17170	POPTR_0001s17170 (11)	scaffold_1:14018788-14019177(+) (11)	NA	Q9FUZ0	"Peptide deformylase 1A, chloroplastic"	AT1G15390.1	peptide deformylase 1A 	LOC_Os01g37510.1	"peptide deformylase, putative, expressed"	Medtr2g126050.1	Formylmethionine deformylase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
Ptp.5533.1.S1_at	A	A1TS	POPTR_0006s14080	POPTR_0006s14080 (11)	scaffold_6:11369103-11369385(-) (11)	NA	O65282	"20 kDa chaperonin, chloroplastic"	AT5G20720.3	chaperonin 20 	LOC_Os06g09679.2	"chaperonin, putative, expressed"	Medtr8g132830.1	GroES-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.5535.1.S1_a_at	A	A1TS	POPTR_0016s07810	POPTR_0016s07810 (10)	scaffold_16:5620868-5622627(+) (10)	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5536.1.S1_at	A	A1TS	POPTR_0010s08170	POPTR_0010s08170 (11)	scaffold_10:9114141-9114486(-) (11)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr4g135740.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5537.1.S1_at	A	A1TS	POPTR_0006s08210	POPTR_0006s08210 (11)	scaffold_6:5969258-5969647(-) (11)	NA	NA	NA	AT2G37480.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g02260.2	expressed protein	Medtr7g118380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5538.1.S1_s_at	A	A1TS	POPTR_0015s10490	POPTR_0015s10490 (11)	scaffold_15:11399151-11401345(-) (11)	NA	Q08480	Adenylate kinase B	AT5G63400.1	adenylate kinase 1 	LOC_Os11g20790.1	"adenylate kinase, putative, expressed"	Medtr8g109570.1	Adenylate kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.5539.2.S1_a_at	A	A1TS	POPTR_0011s17270	POPTR_0011s17270 (11)	scaffold_11:18855947-18856606(-) (11)	NA	Q8W206	COP9 signalosome complex subunit 6a	AT5G56280.1	COP9 signalosome subunit 6A 	LOC_Os08g39070.1	"COP9 signalosome complex subunit 6a, putative, expressed"	Medtr5g089320.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5539.3.S1_a_at	A	A1TS	POPTR_0011s17270	POPTR_0011s17270 (11)	scaffold_11:18856773-18857276(-) (11)	NA	Q8W206	COP9 signalosome complex subunit 6a	AT5G56280.1	COP9 signalosome subunit 6A 	LOC_Os08g39070.1	"COP9 signalosome complex subunit 6a, putative, expressed"	Medtr5g089320.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.554.1.S1_s_at	A	A1TS	POPTR_0012s04520	POPTR_0012s04520 (11)	scaffold_12:3815424-3815663(+) (11)	NA	P50699	Thaumatin-like protein	AT1G73620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os06g47600.1	"thaumatin family domain containing protein, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5540.1.S1_at	A	A1TS	POPTR_0006s14230	POPTR_0006s14230 (11)	scaffold_6:11541487-11541970(+) (11)	NA	NA	NA	AT1G19130.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). "	LOC_Os08g35480.1	"cupin superfamily protein, putative, expressed"	Medtr8g132610.1	"Chain G, X-Ray Crystal Structure Of Protein Q8u9w0 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5542.1.S1_s_at	A	A1TS	POPTR_0008s20800	POPTR_0008s20800 (11)	scaffold_8:14787777-14788087(-) (11)	NA	Q5R824	Carbohydrate kinase domain-containing protein	AT5G19150.2	pfkB-like carbohydrate kinase family protein 	LOC_Os11g17610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5545.1.S1_at	A	A1TS	POPTR_0016s08520	POPTR_0016s08520 (10)	scaffold_16:6330561-6330594(+) (10)	NA	Q9SF40	60S ribosomal protein L4-1	AT3G09630.1	Ribosomal protein L4/L1 family 	LOC_Os07g08330.1	"ribosomal protein L4, putative, expressed"	Medtr1g065440.1	"Ribosomal protein L4/L1e, archeabacterial like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5545.1.S1_s_at	A	A1TS	POPTR_0016s08520	POPTR_0016s08520 (11)	scaffold_16:6330614-6330740(+) (11)	NA	Q9SF40	60S ribosomal protein L4-1	AT3G09630.1	Ribosomal protein L4/L1 family 	LOC_Os07g08330.1	"ribosomal protein L4, putative, expressed"	Medtr1g065440.1	"Ribosomal protein L4/L1e, archeabacterial like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5546.1.A1_at	A	A1TS	POPTR_0014s02200	POPTR_0014s02200 (11)	scaffold_14:1879140-1879501(+) (11)	NA	Q9M7N6	MFP1 attachment factor 1	AT1G47200.1	WPP domain protein 2 	LOC_Os03g11060.1	"MFP1 attachment factor 1, putative, expressed"	Medtr1g023740.1	"MFP1 attachment factor 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5548.1.S1_s_at	A	A2TS	POPTR_0005s22200	POPTR_0005s22200 (11)//POPTR_0005s22210 (11)	scaffold_5:21161806-21162088(+) (11)//scaffold_5:21180295-21180577(+) (11)	NA	Q9SZ83	Uncharacterized oxidoreductase At4g09670	AT4G09670.1	Oxidoreductase family protein 	LOC_Os10g26400.2	"uncharacterized oxidoreductase, putative, expressed"	Medtr3g087060.1	"Oxidoreductase, N-terminal "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5549.1.S1_s_at	A	A1TS	POPTR_0017s13350	POPTR_0017s13350 (11)	scaffold_17:13539966-13540257(+) (11)	NA	O04300	"Alpha-1,4-glucan-protein synthase [UDP-forming]"	AT5G15650.1	reversibly glycosylated polypeptide 2 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
Ptp.5550.1.S1_at	A	A1TS	POPTR_0005s18180	POPTR_0005s18180 (11)	scaffold_5:16287289-16288375(-) (11)	POPTR_0007s10970 (8)	O94432	Uncharacterized RNA-binding protein C660.15	AT4G36960.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g71770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g017210.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5552.1.S1_s_at	A	A1TS	POPTR_0014s16090	POPTR_0014s16090 (11)	scaffold_14:12163317-12163574(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5556.1.S1_at	A	A1TS	POPTR_0006s15000	POPTR_0006s15000 (11)	scaffold_6:12474192-12474565(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G26100.1	casein kinase 1 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr2g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5557.1.S1_at	A	A1TS	POPTR_0004s17920	POPTR_0004s17920 (11)	scaffold_4:17972660-17974073(+) (11)	NA	Q8LDP4	Peptidyl-prolyl cis-trans isomerase CYP19-4	AT4G34960.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g36670.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr3g093650.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.5560.1.A1_at	A	A1TS	POPTR_0016s03490	POPTR_0016s03490 (11)	scaffold_16:1865964-1866418(+) (11)	NA	Q9UNI6	Dual specificity protein phosphatase 12	AT4G18593.1	dual specificity protein phosphatase-related 	LOC_Os12g03990.1	"dual specificity protein phosphatase, putative, expressed"	Medtr7g106530.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.5561.1.A1_at	A	A1TS	POPTR_0011s04780	POPTR_0011s04780 (9)	scaffold_11:4752882-4753019(+) (9)	NA	P34914	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5563.1.S1_at	A	A1TS	POPTR_0011s15210	POPTR_0011s15210 (11)	scaffold_11:17331152-17331622(-) (11)	NA	NA	NA	AT1G63310.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5564.2.A1_a_at	A	A1TS	POPTR_0001s00850	POPTR_0001s00850 (11)	scaffold_1:707961-708220(-) (11)	NA	Q5KII2	Branchpoint-bridging protein	AT5G51300.3	splicing factor-related 	LOC_Os04g31620.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
Ptp.5566.1.S1_at	A	A1TS	POPTR_0017s01510	POPTR_0017s01510 (11)	scaffold_17:1038085-1038965(-) (11)	NA	NA	NA	AT5G37478.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os09g13650.1	"microtubule-associated protein, putative, expressed"	Medtr3g086960.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5568.1.S1_at	A	A1TS	POPTR_0002s23560	POPTR_0002s23560 (9)	scaffold_2:21115512-21115942(+) (9)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os01g68540.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr4g147330.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
Ptp.5569.1.S1_at	A	A1TS	POPTR_0016s06180	POPTR_0016s06180 (10)	scaffold_16:4129202-4129352(-) (10)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.5570.1.S1_at	A	A1TS	POPTR_0010s15180	POPTR_0010s15180 (11)	scaffold_10:14521020-14522688(-) (11)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g23620.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5571.1.S1_at	A	A1TS	POPTR_0018s11500	POPTR_0018s11500 (11)	scaffold_18:12213406-12213859(+) (11)	NA	Q9DBG7	Signal recognition particle receptor subunit alpha	AT4G30600.1	signal recognition particle receptor alpha subunit family protein 	LOC_Os08g37444.3	"signal recognition particle receptor, putative, expressed"	Medtr8g145240.1	"AAA ATPase; Signal recognition particle receptor, alpha subunit, N-terminal "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0005047|signal recognition particle binding||GO:0005515|protein binding	GO:0005785|signal recognition particle receptor complex||GO:0071212|subsynaptic reticulum
Ptp.5572.1.S1_at	A	A1TS	POPTR_0013s03710	POPTR_0013s03710 (11)	scaffold_13:2362028-2362951(+) (11)	NA	Q9SQZ9	UPF0424 protein At3g04780	AT3G04780.1	Protein of unknown function (DUF1000) 	LOC_Os03g58130.1	"thioredoxin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5572.1.S1_s_at	A	A1TS	POPTR_0013s03710	POPTR_0013s03710 (11)	scaffold_13:2362542-2364567(+) (11)	NA	Q9SQZ9	UPF0424 protein At3g04780	AT3G04780.1	Protein of unknown function (DUF1000) 	LOC_Os03g58130.1	"thioredoxin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5573.1.S1_s_at	A	A1TS	POPTR_0001s24380	POPTR_0001s24380 (10)	scaffold_1:23672482-23673795(-) (11)	NA	Q91XL3	UDP-glucuronic acid decarboxylase 1	AT3G46440.2	UDP-XYL synthase 5 	LOC_Os03g16980.2	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr2g114640.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.5577.1.S1_at	A	A1TS	POPTR_0001s16220	POPTR_0001s16220 (11)	scaffold_1:13029910-13029952(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5577.1.S1_s_at	A	A1TS	POPTR_0001s16220	POPTR_0001s16220 (11)	scaffold_1:13029799-13030063(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5577.2.S1_at	A	A1MS	POPTR_0001s16220	POPTR_0001s16220 (11)	scaffold_1:13030850-13030925(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5577.2.S1_s_at	A	A1TS	POPTR_0001s16220	POPTR_0001s16220 (11)	scaffold_1:13030200-13030364(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5579.1.A1_at	A	A1TS	POPTR_0005s18130	POPTR_0005s18130 (11)	scaffold_5:16204108-16204732(-) (11)	NA	NA	NA	AT4G33985.1	Protein of unknown function (DUF1685) 	LOC_Os02g52770.1	expressed protein	Medtr5g017390.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5580.1.S1_s_at	A	A1TS	POPTR_0001s26260	POPTR_0001s26260 (11)	scaffold_1:25319253-25322122(+) (11)	NA	B5DGI7	RNA-binding protein 8A	AT1G51510.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os05g04850.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g008930.1	"RNA-binding protein 8A, putative "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5582.1.S1_s_at	A	A1TS	POPTR_0001s37580	POPTR_0001s37580 (11)	scaffold_1:36549534-36549720(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5583.1.S1_a_at	A	A1TS	POPTR_0006s07290	POPTR_0006s07290 (11)	scaffold_6:5241737-5242007(+) (11)	NA	P60039	60S ribosomal protein L7-3	AT2G44120.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5583.2.S1_at	A	A1TS	POPTR_0006s07290	POPTR_0006s07290 (11)	scaffold_6:5242276-5242806(+) (11)	NA	P60039	60S ribosomal protein L7-3	AT2G44120.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5584.1.S1_s_at	A	A1MS	POPTR_0005s02780	POPTR_0005s02780 (10)	scaffold_5:1784377-1784884(-) (10)	NA	Q8W5S1	Cyclin-H1-1	AT5G27620.1	cyclin H;1 	LOC_Os03g52750.2	"cyclin, putative, expressed"	Medtr1g099610.1	Cyclin-like; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5586.1.S1_s_at	A	A1TS	POPTR_0017s13810	POPTR_0017s13810 (11)	scaffold_17:14036881-14038635(+) (11)	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5588.1.S1_at	A	A1TS	POPTR_0014s01920	POPTR_0014s01920 (11)	scaffold_14:1739197-1740414(-) (11)	NA	Q10170	Arginine N-methyltransferase 2	AT5G65860.1	ankyrin repeat family protein 	LOC_Os03g55330.1	"ankyrin repeat domain containing protein, putative, expressed"	AC235748_3.1	Ankyrin AC235748.1 14430-12165 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5589.1.S1_at	A	A1TS	POPTR_0014s16240	POPTR_0014s16240 (11)	scaffold_14:12329147-12330447(+) (11)	NA	A4K526	UPF0451 protein C17orf61 homolog	AT2G04900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF423 (InterPro:IPR006696); Has 1824 Blast hits to 1824 proteins in 878 species: Archae - 0; Bacteria - 1498; Metazoa - 118; Fungi - 14; Plants - 58; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). 	LOC_Os03g53980.2	expressed protein	Medtr5g092880.1	Protein of unknown function DUF423 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.559.1.S1_s_at	A	A1TS	POPTR_0008s12800	POPTR_0008s12800 (11)	scaffold_8:8302834-8303104(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5591.1.S1_s_at	A	A1TS	POPTR_0016s05530	POPTR_0016s05530 (11)	scaffold_16:3463257-3463482(+) (11)	NA	P49688	40S ribosomal protein S2-3	AT2G41840.1	Ribosomal protein S5 family protein 	LOC_Os03g59310.1	"ribosomal protein, putative, expressed"	Medtr4g157070.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.5592.1.S1_at	A	A1TS	POPTR_0017s13840	POPTR_0017s13840 (11)	scaffold_17:14056567-14056842(+) (11)	NA	Q9SP07	14-3-3-like protein	AT3G02520.1	general regulatory factor 7 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.5594.1.S1_at	A	A3TS	POPTR_0001s14650	POPTR_0001s14660 (11)//POPTR_0001s14650 (11)//POPTR_0001s14620 (9)	scaffold_1:11469330-11469925(-) (9)//scaffold_1:11506507-11507147(-) (11)//scaffold_1:11545662-11546299(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.5595.1.S1_x_at	A	A1TS	POPTR_0005s26930	POPTR_0005s26930 (11)	scaffold_5:24773032-24773206(-) (11)	NA	P42759	Dehydrin ERD10	AT1G20450.1	Dehydrin family protein 	NA	NA	Medtr3g162880.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
Ptp.5598.1.S1_s_at	A	A1TS	POPTR_0008s15390	POPTR_0008s15390 (11)	scaffold_8:10249901-10250456(-) (11)	NA	NA	NA	AT3G22530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g07670.1	expressed protein	Medtr5g006510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5599.1.S1_at	A	A1TS	POPTR_0001s27640	POPTR_0001s27640 (11)	scaffold_1:26510942-26512337(+) (11)	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr6g093440.1	Ribosomal protein L31e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.56.1.S1_at	A	A1TS	POPTR_0009s06880	POPTR_0009s06880 (11)	scaffold_9:6554686-6555040(-) (11)	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT3G12610.1	Leucine-rich repeat (LRR) family protein 	LOC_Os08g39550.1	"polygalacturonase inhibitor 2 precursor, putative, expressed"	Medtr3g030480.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.5600.1.S1_s_at	A	A1TS	POPTR_0017s02590	POPTR_0017s02590 (11)	scaffold_17:1876956-1877480(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5601.1.S1_at	A	A1TS	POPTR_0012s09840	POPTR_0012s09840 (11)	scaffold_12:10754184-10754259(+) (11)	NA	P93447	Elongation factor 1-delta	AT2G18110.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os03g29260.2	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.5603.1.S1_at	A	A1TS	POPTR_0004s14580	POPTR_0004s14580 (9)	scaffold_4:15163944-15164046(-) (9)	NA	Q68FJ8	TOM1-like protein 2	AT5G63640.1	ENTH/VHS/GAT family protein 	LOC_Os08g01740.1	"VHS and GAT domain containing protein, expressed"	Medtr4g144470.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
Ptp.5605.1.S1_at	A	A1TS	POPTR_0010s05400	POPTR_0010s05400 (11)	scaffold_10:6858597-6859305(+) (11)	NA	Q8LPT9	"Alpha-glucan water dikinase, chloroplastic"	AT1G10760.1	"Pyruvate phosphate dikinase, PEP/pyruvate binding domain "	LOC_Os06g30310.1	"alpha-glucan water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.5607.2.S1_s_at	A	A2TS	POPTR_0002s12940	POPTR_0014s03240 (11)//POPTR_0002s12940 (11)	scaffold_14:2578799-2579254(-) (11)//scaffold_2:9615081-9615498(-) (11)	NA	Q9LT08	26S proteasome non-ATPase regulatory subunit 14	AT5G23540.1	Mov34/MPN/PAD-1 family protein 	LOC_Os05g30800.1	"26S proteasome non-ATPase regulatory subunit 14, putative, expressed"	Medtr2g021360.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5608.1.S1_s_at	A	A1TS	POPTR_0005s24660	POPTR_0005s24660 (11)	scaffold_5:23122357-23123248(+) (11)	NA	NA	NA	AT2G31140.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os04g01240.1	"serine-type peptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5609.1.S1_at	A	A1TS	POPTR_0004s23460	POPTR_0004s23460 (11)	scaffold_4:22188105-22188498(+) (11)	NA	Q8GWR3	KH domain-containing protein At1g09660	AT1G09660.1	RNA-binding KH domain-containing protein 	LOC_Os01g66300.1	"KH domain containing protein, putative, expressed"	Medtr2g005410.2	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5610.1.A1_at	A	A1TS	POPTR_0009s15070	POPTR_0009s15070 (11)	scaffold_9:11678342-11678495(-) (11)	NA	O22165	Probable ribosome biogenesis protein RLP24	AT2G44860.2	Ribosomal protein L24e family protein 	LOC_Os07g19190.1	"ribosomal protein L24, putative, expressed"	Medtr4g073290.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5612.1.S1_at	A	A1TS	POPTR_0013s05190	POPTR_0013s05190 (11)	scaffold_13:3679030-3679090(+) (11)	NA	NA	NA	AT5G32450.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g53770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g102810.1	"Aldo/keto reductase; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5612.1.S1_s_at	A	A1TS	POPTR_0013s05190	POPTR_0013s05190 (11)	scaffold_13:3678773-3679014(+) (11)	NA	NA	NA	AT5G32450.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g53770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g102810.1	"Aldo/keto reductase; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5613.1.S1_s_at	A	A1TS	POPTR_0008s09660	POPTR_0008s09660 (11)	scaffold_8:5967504-5967598(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5614.1.S1_at	A	A1TS	POPTR_0015s14490	POPTR_0015s14490 (11)	scaffold_15:14063161-14063884(+) (11)	NA	P62302	40S ribosomal protein S13	AT4G00100.1	ribosomal protein S13A 	LOC_Os08g02410.1	"40S ribosomal protein S13, putative, expressed"	Medtr4g025470.1	"S15/NS1, RNA-binding; Ribosomal S13S15 N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5617.1.S1_s_at	A	A1TS	POPTR_0004s18200	POPTR_0004s18200 (9)	scaffold_4:18174927-18175298(+) (9)	NA	Q9FHW7	SKP1-like protein 1B	AT5G42190.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 	LOC_Os09g36830.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr5g022640.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.5617.2.S1_a_at	A	A1TS	POPTR_0004s18200	POPTR_0004s18200 (11)	scaffold_4:18174048-18174294(+) (11)	NA	Q9FHW7	SKP1-like protein 1B	AT5G42190.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 	LOC_Os09g36830.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr5g022640.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.562.1.S1_at	A	A1TS	POPTR_0015s00290	POPTR_0015s00290 (9)	scaffold_15:138892-139581(-) (9)	NA	NA	NA	AT5G24650.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os04g33220.1	"SAM domain family protein, expressed"	Medtr3g122010.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22; Sterile alpha motif homology "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.5620.1.S1_s_at	A	A2TS	POPTR_0019s00780	POPTR_0895s00200 (11)//POPTR_0019s00780 (11)	scaffold_19:523483-523692(-) (11)//scaffold_895:2708-2917(-) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5621.1.S1_s_at	A	A1TS	POPTR_0014s05220	POPTR_0014s05220 (11)	scaffold_14:3969739-3970333(+) (11)	NA	P17093	40S ribosomal protein S11	AT5G23740.1	ribosomal protein S11-beta 	LOC_Os04g42380.1	"ribosomal protein S17, putative, expressed"	Medtr8g092770.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5622.1.S1_at	A	A1TS	POPTR_0004s08370	POPTR_0004s08370 (11)	scaffold_4:6901723-6902479(-) (11)	NA	Q9FUL4	60S ribosomal protein L24	AT2G36620.1	ribosomal protein L24 	LOC_Os05g40820.1	"ribosomal protein L24, putative, expressed"	Medtr1g073730.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5623.1.S1_at	A	A1TS	POPTR_0006s12510	POPTR_0006s12510 (11)	scaffold_6:9658401-9658599(-) (11)	NA	A9PHC5	S-adenosylmethionine synthase 4	AT2G36880.2	methionine adenosyltransferase 3 	LOC_Os01g18860.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.5625.1.S1_s_at	A	A1TS	POPTR_0004s23510	POPTR_0004s23510 (10)	scaffold_4:22208634-22213124(+) (11)	NA	O04486	Ras-related protein RABA2a	AT1G09630.1	RAB GTPase 11C 	LOC_Os05g01480.1	"ras-related protein, putative, expressed"	Medtr2g005340.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5627.1.S1_at	A	A1TS	POPTR_0008s05190	POPTR_0008s05190 (11)	scaffold_8:3005123-3005212(-) (11)	NA	Q9AT34	40S ribosomal protein S15a	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5628.2.S1_at	A	A1TA	POPTR_0017s05660	POPTR_0017s05660 (11)	scaffold_17:4435413-4435643(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g111350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5629.1.S1_s_at	A	A1TS	POPTR_0014s05180	POPTR_0014s05180 (11)	scaffold_14:3949532-3950160(-) (11)	NA	NA	NA	AT2G44670.1	Protein of unknown function (DUF581) 	LOC_Os04g49620.1	"DUF581 domain containing protein, expressed"	Medtr8g008600.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5630.1.S1_at	A	A1TS	POPTR_0001s37610	POPTR_0001s37610 (11)	scaffold_1:36578375-36580777(+) (11)	NA	P35659	Protein DEK	AT4G26630.2	DEK domain-containing chromatin associated protein 	LOC_Os03g40010.1	"DEK C terminal domain containing protein, expressed"	Medtr5g103320.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5631.1.S1_at	A	A1TS	POPTR_0011s08980	POPTR_0011s08980 (11)	scaffold_11:11020166-11020660(-) (11)	NA	NA	NA	AT1G29980.1	"Protein of unknown function, DUF642 "	LOC_Os01g55190.1	expressed protein	Medtr2g024780.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5632.1.S1_s_at	A	A1TS	POPTR_0006s14400	POPTR_0006s14400 (11)	scaffold_6:11765149-11765642(+) (11)	NA	Q8RWQ9	Thiol protease aleurain-like	AT3G45310.1	Cysteine proteinases superfamily protein 	LOC_Os09g27030.2	"oryzain gamma chain precursor, putative, expressed"	Medtr4g109600.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.5632.3.S1_s_at	A	A1TS	POPTR_0006s14400	POPTR_0006s14400 (11)	scaffold_6:11763702-11763893(+) (11)	NA	Q8RWQ9	Thiol protease aleurain-like	AT3G45310.1	Cysteine proteinases superfamily protein 	LOC_Os09g27030.2	"oryzain gamma chain precursor, putative, expressed"	Medtr4g109600.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.5633.1.S1_at	A	A1TS	POPTR_0010s09330	POPTR_0010s09330 (11)	scaffold_10:10188117-10188194(+) (11)	NA	Q8GTE3	40S ribosomal protein S3a	AT3G04840.1	Ribosomal protein S3Ae 	LOC_Os12g21798.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5633.1.S1_s_at	A	A1TS	POPTR_0010s09330	POPTR_0010s09330 (11)	scaffold_10:10188694-10189291(+) (11)	NA	Q8GTE3	40S ribosomal protein S3a	AT3G04840.1	Ribosomal protein S3Ae 	LOC_Os12g21798.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5633.1.S1_x_at	A	A1TS	POPTR_0010s09330	POPTR_0010s09330 (11)	scaffold_10:10188118-10189319(+) (11)	NA	Q8GTE3	40S ribosomal protein S3a	AT3G04840.1	Ribosomal protein S3Ae 	LOC_Os12g21798.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5635.1.S1_s_at	A	A1TS	POPTR_0015s05710	POPTR_0015s05710 (11)	scaffold_15:6055992-6056070(+) (11)	NA	Q9SH59	Reticulon-like protein B3	AT1G64090.1	Reticulan like protein B3 	LOC_Os05g45050.2	"reticulon domain containing protein, putative, expressed"	Medtr1g126140.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.5636.1.S1_at	A	A1TS	POPTR_0005s25620	POPTR_0005s25620 (9)	scaffold_5:23851102-23851520(-) (9)	NA	O23052	Uncharacterized TPR repeat-containing protein At1g05150	AT1G05150.1	Calcium-binding tetratricopeptide family protein 	LOC_Os03g15740.1	"uncharacterized TPR repeat-containing protein, putative, expressed"	Medtr1g065540.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; "	NA	GO:0008270|zinc ion binding	NA
Ptp.5638.1.S1_at	A	A1TS	POPTR_0005s27280	POPTR_0005s27280 (10)	scaffold_5:24992029-24992889(-) (10)	NA	Q9SFW6	Cyclin-B2-4	AT1G76310.1	CYCLIN B2;4 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.5639.1.S1_at	A	A1TS	POPTR_0001s12880	POPTR_0001s12880 (11)	scaffold_1:9999582-10000457(+) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G38895.2	RING/U-box superfamily protein 	LOC_Os01g70160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.564.1.A1_at	A	A1TS	POPTR_0017s05720	POPTR_0017s05720 (11)	scaffold_17:4471941-4472080(-) (11)	NA	Q6GN58	Protein YIF1B-A	AT1G30890.2	Integral membrane HRF1 family protein 	LOC_Os04g08320.1	"YIF1B, putative, expressed"	Medtr7g020670.1	Hrf1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5640.1.S1_at	A	A1TS	POPTR_0001s36800	POPTR_0001s36800 (11)	scaffold_1:35538077-35539576(+) (11)	NA	NA	NA	AT2G34680.1	Outer arm dynein light chain 1 protein 	LOC_Os07g05470.1	"AIR9 protein, putative, expressed"	Medtr2g055450.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
Ptp.5642.1.S1_s_at	A	A1TS	POPTR_0011s02660	POPTR_0011s02660 (11)	scaffold_11:2575381-2575421(+) (11)	NA	P19950	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os02g06700.2	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5643.1.S1_a_at	A	A1TS	POPTR_0012s03600	POPTR_0012s03600 (11)	scaffold_12:2834386-2834548(+) (11)	NA	Q9WY68	Putative 1-aminocyclopropane-1-carboxylate deaminase	AT1G48420.1	D-cysteine desulfhydrase 	LOC_Os02g53330.2	"1-aminocyclopropane-1-carboxylate deaminase, putative, expressed"	Medtr4g154480.1	Pyridoxal phosphate-dependent deaminase 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.5643.1.S1_s_at	A	A1TS	POPTR_0012s03600	POPTR_0012s03600 (11)	scaffold_12:2833159-2833850(+) (11)	NA	Q9WY68	Putative 1-aminocyclopropane-1-carboxylate deaminase	AT1G48420.1	D-cysteine desulfhydrase 	LOC_Os02g53330.2	"1-aminocyclopropane-1-carboxylate deaminase, putative, expressed"	Medtr4g154480.1	Pyridoxal phosphate-dependent deaminase 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.5643.2.S1_at	A	A1TS	POPTR_0012s03600	POPTR_0012s03600 (10)	scaffold_12:2834725-2834971(+) (10)	NA	Q9WY68	Putative 1-aminocyclopropane-1-carboxylate deaminase	AT1G48420.1	D-cysteine desulfhydrase 	LOC_Os02g53330.2	"1-aminocyclopropane-1-carboxylate deaminase, putative, expressed"	Medtr4g154480.1	Pyridoxal phosphate-dependent deaminase 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.5645.1.S1_s_at	A	A1TS	POPTR_0001s01350	POPTR_0001s01350 (9)	scaffold_1:994015-994416(+) (9)	NA	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	AC235094_22.2	Ribosomal protein L13e AC235094.1 123915-120635 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5645.2.A1_at	A	A2TA	POPTR_0001s01350	POPTR_0001s01350 (11)//POPTR_0013s02860 (10)	scaffold_1:991996-993064(-) (11)//scaffold_13:1731965-1732740(-) (10)	POPTR_0003s10180 (7)//POPTR_0016s08310 (6)	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	AC235094_22.2	Ribosomal protein L13e AC235094.1 123915-120635 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5645.3.A1_a_at	A	A1TS	POPTR_0001s01350	POPTR_0001s01350 (9)	scaffold_1:993832-993864(+) (9)	NA	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	AC235094_22.2	Ribosomal protein L13e AC235094.1 123915-120635 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5646.1.S1_at	A	A1TS	POPTR_0008s07760	POPTR_0008s07760 (10)	scaffold_8:4761725-4761846(-) (10)	NA	NA	NA	AT5G16250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g41900.1	expressed protein	Medtr7g090170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5646.1.S1_s_at	A	A1TS	POPTR_0008s07760	POPTR_0008s07760 (11)	scaffold_8:4761321-4761418(-) (11)	NA	NA	NA	AT5G16250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g41900.1	expressed protein	Medtr7g090170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5648.1.A1_at	A	A1TS	POPTR_0001s19190	POPTR_0001s19190 (11)	scaffold_1:16651353-16651784(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.5648.2.S1_at	A	A1TS	POPTR_0001s19190	POPTR_0001s19190 (11)	scaffold_1:16654326-16655485(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.5649.1.S1_at	A	A1TS	POPTR_0012s11870	POPTR_0012s11870 (11)	scaffold_12:12232168-12233751(-) (11)	NA	Q6PGS5	Transmembrane protein 56-B	AT1G31300.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os03g46410.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
Ptp.565.1.S1_at	A	A1TS	POPTR_0001s00940	POPTR_0001s00940 (11)	scaffold_1:767681-768052(+) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT1G31650.1	RHO guanyl-nucleotide exchange factor 14 	LOC_Os02g47420.3	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr5g026080.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
Ptp.5650.1.S1_s_at	A	A1TS	POPTR_0017s08170	POPTR_0017s08170 (11)	scaffold_17:6632040-6632172(+) (11)	NA	Q9FKC0	60S ribosomal protein L13a-4	AT5G48760.2	Ribosomal protein L13 family protein 	LOC_Os03g54890.1	"ribosomal protein L13, putative, expressed"	Medtr5g091220.1	"Ribosomal protein L13, archea and eukaryotic form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5651.1.S1_s_at	A	A2TS	POPTR_0006s03390	POPTR_0006s03390 (11)//POPTR_0016s03300 (11)	scaffold_16:1703416-1703495(+) (11)//scaffold_6:2161325-2161404(+) (11)	NA	Q43697	Tubulin beta-5 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5653.1.S1_at	A	A1TS	POPTR_0016s05970	POPTR_0016s05970 (10)	scaffold_16:3902005-3902899(-) (10)	NA	Q9M2P4	E3 ubiquitin-protein ligase SINAT2	AT3G58040.1	seven in absentia of Arabidopsis 2 	LOC_Os05g14860.1	"seven in absentia protein family domain containing protein, expressed"	Medtr7g112270.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
Ptp.5654.1.S1_s_at	A	A1TS	POPTR_0003s17450	POPTR_0003s17450 (11)	scaffold_3:16782187-16782228(-) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5655.1.S1_at	A	A1TS	POPTR_0005s10350	POPTR_0005s10350 (9)	scaffold_5:7424234-7425906(+) (9)	NA	A1L244	Phosphatidylinositide phosphatase SAC1-A	AT3G51460.1	Phosphoinositide phosphatase family protein 	LOC_Os02g34884.1	"SacI homology domain containing protein, expressed"	Medtr5g023860.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5656.1.S1_s_at	A	A1TS	POPTR_0010s08670	POPTR_0010s08670 (10)	scaffold_10:9561170-9562351(+) (11)	NA	NA	NA	AT3G23090.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5657.1.S1_s_at	A	A1TS	POPTR_0002s25480	POPTR_0002s25480 (11)	scaffold_2:22555000-22555172(+) (11)	NA	NA	NA	AT2G20230.1	Tetraspanin family protein 	LOC_Os06g51480.1	expressed protein	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.5658.1.S1_at	A	A1TS	POPTR_0014s12340	POPTR_0014s12340 (11)	scaffold_14:9116319-9116430(-) (11)	NA	Q9M9W1	60S ribosomal protein L22-2	AT3G05560.3	Ribosomal L22e protein family 	LOC_Os07g47710.1	"60S ribosomal protein L22-2, putative, expressed"	Medtr1g108350.1	Ribosomal L22e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5658.1.S1_x_at	A	A1TS	POPTR_0014s12340	POPTR_0014s12340 (11)	scaffold_14:9116319-9117513(-) (11)	NA	Q9M9W1	60S ribosomal protein L22-2	AT3G05560.3	Ribosomal L22e protein family 	LOC_Os07g47710.1	"60S ribosomal protein L22-2, putative, expressed"	Medtr1g108350.1	Ribosomal L22e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5659.1.S1_at	A	A1TS	POPTR_0004s13630	POPTR_0004s13630 (10)	scaffold_4:13984078-13986313(-) (10)	NA	O64702	High mobility group B protein 14	AT2G34450.1	HMG-box (high mobility group) DNA-binding family protein 	LOC_Os01g47600.1	"HMG1/2, putative, expressed"	Medtr4g165590.1	High mobility group box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.566.1.A1_at	A	A1TS	POPTR_0008s20230	POPTR_0008s20230 (11)	scaffold_8:14007922-14008237(-) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G18900.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g41010.1	"oxidoreductase, putative, expressed"	Medtr2g025880.2	Metridin-like ShK toxin; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.5661.1.S1_at	A	A1TS	POPTR_0014s05900	POPTR_0014s05900 (10)	scaffold_14:4402782-4404732(+) (10)	NA	P73548	Phosphatidate cytidylyltransferase	AT2G45150.2	cytidinediphosphate diacylglycerol synthase 4 	LOC_Os02g03460.1	"phosphatidate cytidylyltransferase, putative, expressed"	NA	NA	NA	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	GO:0016020|membrane
Ptp.5662.1.S1_s_at	A	A1TS	POPTR_0001s33490	POPTR_0001s33490 (11)	scaffold_1:31688261-31688730(-) (11)	NA	Q6R3K6	Probable metal-nicotianamine transporter YSL6	AT3G27020.1	YELLOW STRIPE like 6 	LOC_Os04g32050.1	"transposon protein, putative, unclassified, expressed"	Medtr7g018260.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5663.1.S1_at	A	A1TS	POPTR_0013s05700	POPTR_0013s05700 (11)	scaffold_13:4106338-4106494(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os05g40980.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5663.1.S1_s_at	A	A1TS	POPTR_0013s05700	POPTR_0013s05700 (11)	scaffold_13:4105988-4106211(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os05g40980.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5664.1.S1_at	A	A1TS	POPTR_0011s13370	POPTR_0011s13370 (9)	scaffold_11:16130186-16130276(-) (11)	NA	Q9LHQ7	mRNA cap guanine-N7 methyltransferase 1	AT3G20650.1	mRNA capping enzyme family protein 	LOC_Os08g08200.1	"mRNA cap guanine-N7 methyltransferase 1, putative, expressed"	Medtr7g133520.1	"mRNA capping enzyme, large subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0008168|methyltransferase activity	NA
Ptp.5665.1.S1_s_at	A	A1TS	POPTR_0006s10090	POPTR_0006s10090 (11)	scaffold_6:7504125-7506037(-) (11)	NA	NA	NA	AT5G01470.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g61140.1	expressed protein	Medtr4g008870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5666.1.S1_s_at	A	A1TS	POPTR_0016s02040	POPTR_0016s02040 (11)	scaffold_16:975755-975943(-) (11)	NA	Q05462	60S ribosomal protein L27	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os10g41470.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5666.2.S1_at	A	A1TS	POPTR_0016s02040	POPTR_0016s02040 (9)	scaffold_16:976063-976121(-) (9)	NA	Q05462	60S ribosomal protein L27	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os10g41470.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5669.1.S1_at	A	A1TS	POPTR_0002s21450	POPTR_0002s21450 (11)	scaffold_2:17957001-17957336(+) (11)	NA	NA	NA	AT2G32580.1	Protein of unknown function (DUF1068) 	LOC_Os03g56610.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.567.1.S1_at	A	A1TS	POPTR_0014s17010	POPTR_0014s17010 (9)	scaffold_14:13202483-13202990(+) (9)	NA	Q8LPQ9	Flowering time control protein FPA	AT4G12640.1	RNA recognition motif (RRM)-containing protein 	LOC_Os09g12730.2	"RNA recognition motif containing protein, expressed"	Medtr3g111300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5670.1.S1_s_at	A	A1TS	POPTR_0005s18960	POPTR_0005s18960 (11)	scaffold_5:17455757-17456584(+) (11)	POPTR_0007s09950 (7)	P28523	Casein kinase II subunit alpha	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5672.1.S1_at	A	A1TS	POPTR_0018s11900	POPTR_0018s11900 (11)	scaffold_18:12560455-12563267(+) (11)	NA	Q9ZRD6	VAMP-like protein YKT61	AT5G58060.1	SNARE-like superfamily protein 	LOC_Os01g73300.1	"VAMP-like protein YKT62, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.5673.1.S1_at	A	A1TS	POPTR_0003s03250	POPTR_0003s03250 (11)	scaffold_3:3658884-3659409(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.4	casein kinase II  beta chain 1 	LOC_Os10g41520.1	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.5674.2.S1_s_at	A	A1TS	POPTR_0014s01740	POPTR_0014s01740 (11)	scaffold_14:1631137-1632571(-) (11)	NA	P31166	"Adenine phosphoribosyltransferase 1, chloroplastic"	AT1G27450.1	adenine phosphoribosyl transferase 1 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.5678.1.S1_a_at	A	A1TS	POPTR_0016s13030	POPTR_0016s13030 (11)	scaffold_12:11586688-11586748(+) (11)//scaffold_12:11601251-11601311(-) (11)//scaffold_16:12312749-12312809(-) (11)//scaffold_16:12348657-12348717(-) (11)	NA	NA	NA	AT3G08880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). 	NA	NA	Medtr1g126870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5678.1.S1_at	A	A1TS	POPTR_0016s13030	POPTR_0016s13030 (11)	scaffold_12:11586226-11586694(+) (9)//scaffold_16:12312803-12313278(-) (10)//scaffold_16:12348711-12349185(-) (11)	POPTR_0012s10910 (8)	NA	NA	AT3G08880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). 	NA	NA	Medtr1g126870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5679.1.S1_at	A	A1TS	POPTR_0015s06680	POPTR_0015s06680 (10)	scaffold_15:7668606-7671817(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5680.1.S1_s_at	A	A1TS	POPTR_0002s13920	POPTR_0002s13920 (11)	scaffold_2:10330551-10330928(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g41880.1	"hyaluronan/mRNA binding family domain containing protein, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5681.1.S1_at	A	A1TS	POPTR_0015s03670	POPTR_0015s03670 (11)	scaffold_15:3467885-3467921(-) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g158240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5681.1.S1_s_at	A	A1TS	POPTR_0015s03670	POPTR_0015s03670 (11)	scaffold_15:3467510-3468076(-) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g158240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5682.1.S1_s_at	A	A1TS	POPTR_0001s47070	POPTR_0001s47070 (11)	scaffold_1:47392908-47392999(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5682.3.S1_s_at	A	A1TS	POPTR_0001s47070	POPTR_0001s47070 (11)	scaffold_1:47392772-47392871(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5683.1.S1_s_at	A	A1TS	POPTR_0011s15120	POPTR_0011s15120 (9)	scaffold_11:17289197-17289926(+) (9)	POPTR_0011s15130 (7)	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.569.1.S1_s_at	A	A1TS	POPTR_0003s06160	POPTR_0003s06160 (11)	scaffold_3:7535781-7538171(-) (11)//scaffold_3:7573239-7575618(-) (11)	NA	Q5RC30	Signal peptidase complex catalytic subunit SEC11C	AT1G52600.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os06g16260.1	"OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed"	Medtr2g126230.1	"Peptidase S24, S26A and S26B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5691.1.S1_at	A	A1TS	POPTR_0007s13530	POPTR_0007s13530 (10)	scaffold_7:13583677-13585956(-) (10)	NA	NA	NA	AT3G51010.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g03540.1	expressed protein	Medtr8g093040.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5692.1.S1_s_at	A	A2TS	POPTR_0001s07160	POPTR_0001s07160 (11)//POPTR_0003s18990 (11)	scaffold_1:5437084-5437303(+) (11)//scaffold_3:17855041-17855260(-) (11)	NA	Q9M612	Nascent polypeptide-associated complex subunit alpha-like protein	AT3G12390.1	"Nascent polypeptide-associated complex (NAC), alpha subunit family protein "	LOC_Os01g71230.2	"nascent polypeptide-associated complex subunit alpha-like protein 3, putative, expressed"	Medtr7g105560.1	Ubiquitin-associated; Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5693.1.S1_s_at	A	A1TS	POPTR_0001s44990	POPTR_0001s44990 (11)	scaffold_1:45312457-45313125(-) (11)	NA	Q9XEX2	Peroxiredoxin-2B	AT1G65980.1	thioredoxin-dependent peroxidase 1 	LOC_Os01g48420.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.5694.1.A1_a_at	A	A1TS	POPTR_0001s47190	POPTR_0001s47190 (11)	scaffold_1:47488670-47489180(+) (11)	NA	Q8VYB2	Uridine kinase-like protein 3	AT1G55810.3	uridine kinase-like 3 	LOC_Os02g17320.2	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr3g080300.1	Phosphoribosyltransferase; Phosphoribulokinase/uridine kinase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.5695.1.S1_a_at	A	A2TS	POPTR_0155s00210	POPTR_0271s00220 (11)//POPTR_0155s00210 (11)	scaffold_155:3997-4362(-) (11)//scaffold_271:5115-5481(-) (11)	NA	Q9SX68	"50S ribosomal protein L18, chloroplastic"	AT1G48350.1	Ribosomal L18p/L5e family protein 	LOC_Os03g61260.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr2g052360.1	Ribosomal protein L18 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5696.1.S1_s_at	A	A1TS	POPTR_0006s15890	POPTR_0006s15890 (11)	scaffold_6:13565916-13566378(+) (11)	NA	O82197	Vacuolar protein sorting-associated protein 32 homolog 1	AT2G19830.1	SNF7 family protein 	LOC_Os06g40620.2	"SNF7 domain containing protein, putative, expressed"	Medtr4g160490.1	Snf7 	GO:0015031|protein transport	NA	NA
Ptp.5698.1.S1_s_at	A	A1TS	POPTR_0017s08600	POPTR_0017s08600 (11)	scaffold_17:7212985-7213195(-) (11)	NA	Q54Z26	Serine hydroxymethyltransferase 1	AT4G13930.1	serine hydroxymethyltransferase 4 	LOC_Os12g22030.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr4g133030.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.5699.1.S1_at	A	A1TS	POPTR_0010s20140	POPTR_0010s20140 (11)	scaffold_10:17852626-17853255(-) (11)	NA	Q9LMK0	60S ribosomal protein L35a-1	AT1G07070.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.57.2.S1_a_at	A	A1TS	POPTR_0002s07790	POPTR_0002s07790 (10)	scaffold_2:5335607-5336149(-) (10)	NA	Q9C5I1	UDP-sugar pyrophosphorylase	AT5G52560.1	UDP-sugar pyrophosphorylase 	LOC_Os06g48760.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.570.1.S1_s_at	A	A1TS	POPTR_0015s09880	POPTR_0015s09880 (10)	scaffold_15:10963625-10966065(+) (11)	NA	NA	NA	AT1G67785.1	unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g68030.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5700.1.S1_s_at	A	A1TS	POPTR_0006s12350	POPTR_0006s12350 (11)	scaffold_6:9513373-9514029(+) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.5701.1.S1_at	A	A1TS	POPTR_0005s26950	POPTR_0005s26950 (11)	scaffold_5:24786579-24787031(+) (11)	NA	NA	NA	AT1G20460.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g46681.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5702.1.S1_s_at	A	A1TS	POPTR_0004s06940	POPTR_0004s06940 (11)	scaffold_4:5766744-5766780(-) (11)	NA	Q9CX34	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5702.2.S1_at	A	A1TS	POPTR_0004s06940	POPTR_0004s06940 (9)	scaffold_4:5765836-5765902(-) (11)	NA	Q9CX34	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5704.1.S1_at	A	A1TS	POPTR_0014s02980	POPTR_0014s02980 (9)	scaffold_14:2447635-2447808(-) (9)	NA	O15488	Glycogenin-2	AT4G33330.2	plant glycogenin-like starch initiation protein 3 	LOC_Os03g08600.1	"glycosyl transferase, putative, expressed"	Medtr1g024490.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.5707.1.A1_s_at	A	A1TS	POPTR_0001s15910	POPTR_0001s15910 (11)	scaffold_1:12755634-12758875(+) (11)	NA	O64764	"Thioredoxin O1, mitochondrial"	AT2G35010.2	thioredoxin O1 	LOC_Os06g45510.2	"thioredoxin, putative, expressed"	NA	NA	GO:0045454|cell redox homeostasis	NA	NA
Ptp.5709.1.S1_s_at	A	A1TS	POPTR_0013s06370	POPTR_0013s06370 (9)	scaffold_13:4926144-4926542(+) (9)	NA	Q94AA9	"Xylogalacturonan beta-1,3-xylosyltransferase"	AT3G45400.1	exostosin family protein 	LOC_Os03g20850.1	"exostosin family domain containing protein, expressed"	Medtr7g103930.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.571.1.A1_at	A	A1TS	POPTR_0006s23400	POPTR_0006s23400 (11)	scaffold_6:22132079-22133317(-) (11)	NA	O64847	UPF0136 membrane protein At2g26240	AT3G43520.1	Transmembrane proteins 14C 	LOC_Os04g55930.1	expressed protein	NA	NA	NA	NA	GO:0016020|membrane
Ptp.5711.1.S1_at	A	A1TS	POPTR_0006s03540	POPTR_0006s03540 (9)	scaffold_6:2310290-2311311(+) (11)	NA	Q5SMQ9	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr7g106430.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.5713.2.S1_a_at	A	A3TS	POPTR_0009s01420	POPTR_0009s01420 (11)//POPTR_0009s01410 (10)//POPTR_0143s00200 (9)	scaffold_143:1448-1669(-) (9)//scaffold_9:1661199-1661491(-) (10)//scaffold_9:1676828-1677120(-) (11)	NA	O82811	High-affinity nitrate transporter 2.1	AT1G08090.1	nitrate transporter 2:1 	LOC_Os02g02190.1	"transporter, major facilitator family, putative, expressed"	AC233663_16.1	"High affinity nitrate transporter, putative AC233663.2 118942-120870 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5715.1.S1_at	A	A1TS	POPTR_0001s08750	POPTR_0001s08750 (11)	scaffold_1:6685830-6686158(+) (11)	NA	P23586	Sugar transport protein 1	AT1G11260.1	sugar transporter 1 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr3g122420.1	Sugar transporter; Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.5717.1.S1_at	A	A1TS	POPTR_0009s04750	POPTR_0009s04750 (10)	scaffold_9:5023321-5023776(-) (10)	NA	Q9SBA7	Sugar transport protein 8	AT5G26250.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.5719.1.S1_at	A	A1TS	POPTR_0004s03360	POPTR_0004s03360 (11)	scaffold_4:2292705-2293236(-) (11)	NA	Q41144	Sugar carrier protein C	AT1G11260.1	sugar transporter 1 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr4g124840.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.572.1.A1_at	A	A1TS	POPTR_0015s08140	POPTR_0015s08140 (11)	scaffold_15:9411350-9411857(+) (11)	NA	NA	NA	AT3G48120.1	unknown protein; Has 22990 Blast hits to 12942 proteins in 666 species: Archae - 8; Bacteria - 739; Metazoa - 13803; Fungi - 2465; Plants - 1363; Viruses - 116; Other Eukaryotes - 4496 (source: NCBI BLink). 	LOC_Os01g49340.1	"arginine/serine-rich coiled-coil protein 1, putative, expressed"	Medtr8g124960.1	"FRAY subfamily protein kinase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5721.1.S1_at	A	A1TS	POPTR_0010s10820	POPTR_0010s10820 (11)	scaffold_10:11225676-11225967(-) (11)	NA	NA	NA	AT2G02180.1	tobamovirus multiplication protein 3 	LOC_Os10g39220.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5722.1.S1_at	A	A1TS	POPTR_0001s10930	POPTR_0001s10930 (11)	scaffold_1:8480891-8482196(-) (11)	NA	Q8VY91	"30S ribosomal protein S6 alpha, chloroplastic"	AT1G64510.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os03g62630.1	"ribosomal protein S6, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5723.1.S1_at	A	A1TS	POPTR_0001s14870	POPTR_0001s14870 (11)	scaffold_1:11679700-11680474(+) (11)	NA	Q9XHS0	40S ribosomal protein S12	AT2G32060.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g05580.1	"ribosomal protein L7Ae, putative, expressed"	Medtr5g012950.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5726.1.S1_at	A	A1TS	POPTR_0002s08680	POPTR_0002s08680 (9)	scaffold_2:6082284-6083169(+) (9)	NA	NA	NA	AT1G21930.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g29670.1	expressed protein	Medtr5g065220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5727.1.S1_x_at	A	A1TS	POPTR_0010s07020	POPTR_0010s07020 (11)	scaffold_10:8265730-8266457(-) (11)	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5728.1.S1_s_at	A	A1TS	POPTR_0014s04860	POPTR_0014s04860 (11)	scaffold_14:3748440-3748730(+) (11)	NA	P49030	Protein mago nashi homolog	AT1G02140.1	mago nashi family protein 	LOC_Os12g18880.1	"mago nashi, putative, expressed"	Medtr3g163680.1	Mago nashi protein 	NA	NA	GO:0005634|nucleus
Ptp.5729.1.S1_at	A	A1TS	POPTR_0008s10300	POPTR_0008s10300 (11)	scaffold_8:6448345-6448575(-) (11)	NA	P57741	Probable prefoldin subunit 3	AT5G49510.2	prefoldin 3 	LOC_Os12g37590.1	"prefoldin, putative, expressed"	Medtr2g037940.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.5730.1.S1_at	A	A1TS	POPTR_0006s11800	POPTR_0006s11800 (11)	scaffold_6:8976160-8976418(-) (11)	NA	P42896	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.5730.2.S1_a_at	A	A1TS	POPTR_0006s11800	POPTR_0006s11800 (11)	scaffold_6:8977600-8977820(-) (11)	NA	P42896	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.5734.2.S1_s_at	A	A1TS	POPTR_0003s16930	POPTR_0003s16930 (11)	scaffold_3:16428686-16428886(-) (11)	NA	Q9C7F5	Nuclear transport factor 2	AT1G27310.1	nuclear transport factor 2A 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
Ptp.5734.3.A1_at	A	A1TS	POPTR_0003s16930	POPTR_0003s16930 (10)	scaffold_3:16427204-16428598(-) (10)	NA	Q9C7F5	Nuclear transport factor 2	AT1G27310.1	nuclear transport factor 2A 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
Ptp.5735.1.S1_at	A	A1TS	POPTR_0005s25820	POPTR_0005s25820 (9)	scaffold_5:24009256-24009749(+) (10)	NA	P33083	Auxin-induced protein 6B	AT1G75590.1	SAUR-like auxin-responsive protein family  	LOC_Os04g56680.1	"OsSAUR22 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g097600.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5736.1.S1_at	A	A1TS	POPTR_0002s25950	POPTR_0002s25950 (11)	scaffold_2:22944951-22945862(+) (11)	NA	P27061	Acid phosphatase 1	AT1G04040.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr1g065230.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
Ptp.5737.1.A1_at	A	A1TS	POPTR_0016s08930	POPTR_0016s08930 (11)	scaffold_16:6722390-6722455(-) (11)	NA	B9IJ21	"Adenylosuccinate synthetase, chloroplastic"	AT3G57610.1	adenylosuccinate synthase 	LOC_Os03g07840.1	"adenylosuccinate synthetase, chloroplast precursor, putative, expressed"	Medtr7g110920.1	Adenylosuccinate synthetase 	GO:0006164|purine nucleotide biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004019|adenylosuccinate synthase activity||GO:0000287|magnesium ion binding||GO:0005525|GTP binding	NA
Ptp.5737.1.A1_s_at	A	A1TS	POPTR_0016s08930	POPTR_0016s08930 (11)	scaffold_16:6721861-6722391(-) (11)	NA	B9IJ21	"Adenylosuccinate synthetase, chloroplastic"	AT3G57610.1	adenylosuccinate synthase 	LOC_Os03g07840.1	"adenylosuccinate synthetase, chloroplast precursor, putative, expressed"	Medtr7g110920.1	Adenylosuccinate synthetase 	GO:0006164|purine nucleotide biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004019|adenylosuccinate synthase activity||GO:0000287|magnesium ion binding||GO:0005525|GTP binding	NA
Ptp.5738.1.S1_at	A	A1TS	POPTR_0001s01380	POPTR_0001s01380 (9)	scaffold_1:1027111-1027143(+) (9)	NA	Q94II3	Probable methyltransferase PMT21	AT4G19120.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr5g027150.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.5738.2.S1_s_at	A	A1TS	POPTR_0006s04890	POPTR_0006s04890 (11)	scaffold_6:3422338-3422447(-) (11)	NA	NA	NA	AT2G41810.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.574.1.A1_at	A	A1TS	POPTR_0001s29390	POPTR_0001s29390 (11)	scaffold_1:28090323-28091255(-) (11)	NA	Q04212	D-arabinose 1-dehydrogenase	AT4G33670.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os12g29760.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g121930.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5740.1.S1_a_at	A	A1TS	POPTR_0002s10440	POPTR_0002s10440 (11)	scaffold_2:7527426-7528829(-) (11)	NA	NA	NA	AT5G49710.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g54080.2	expressed protein	Medtr5g074990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5741.1.S1_at	A	A1TS	POPTR_0011s03550	POPTR_0011s03550 (11)	scaffold_11:3610763-3611419(-) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT1G11430.1	"plastid developmental protein DAG, putative "	LOC_Os08g04450.3	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g011060.1	"DAG protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5742.1.S1_at	A	A1TS	POPTR_0010s05340	POPTR_0010s05340 (11)	scaffold_10:6808256-6808314(+) (11)	NA	Q84JS6	Homeobox protein knotted-1-like 6	AT1G23380.2	KNOTTED1-like homeobox gene 6 	LOC_Os03g51690.2	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5747.1.S1_s_at	A	A1TS	POPTR_0030s00470	POPTR_0030s00470 (11)	scaffold_30:203983-204520(-) (11)	NA	Q8LC83	40S ribosomal protein S24-2	AT5G28060.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5747.2.A1_s_at	A	A1TA	POPTR_0030s00470	POPTR_0030s00470 (11)	scaffold_30:205801-205886(+) (11)	POPTR_0005s05120 (7)	Q8LC83	40S ribosomal protein S24-2	AT5G28060.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5748.1.S1_s_at	A	A1TS	POPTR_0001s15850	POPTR_0001s15850 (11)	scaffold_1:12689819-12689877(-) (11)//scaffold_3:11925571-11925619(-) (9)	POPTR_0003s11070 (8)	P14009	14 kDa proline-rich protein DC2.15	AT4G12500.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46810.1	"LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106110.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5749.1.S1_a_at	A	A1TS	POPTR_0008s17140	POPTR_0008s17140 (11)	scaffold_8:11524888-11525340(+) (11)	NA	O22785	Pre-mRNA-processing factor 19 homolog 2	AT2G33340.2	MOS4-associated  complex 3B 	LOC_Os10g32880.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g065090.1	U box; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.575.1.S1_s_at	A	A1TS	POPTR_0016s08010	POPTR_0016s08010 (11)	scaffold_16:5812800-5812969(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT3G52660.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g127590.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5750.1.A1_a_at	A	A1TS	POPTR_0013s12480	POPTR_0013s12480 (11)	scaffold_13:13140309-13140395(-) (11)	NA	Q54YW8	"DNA-directed RNA polymerases I, II, and III subunit rpabc3"	AT3G59600.1	RNA polymerase Rpb8 	LOC_Os06g48230.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed"	Medtr8g147760.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
Ptp.5750.2.S1_a_at	A	A1TS	POPTR_0013s12480	POPTR_0013s12480 (11)	scaffold_13:13137024-13137731(-) (11)	NA	Q54YW8	"DNA-directed RNA polymerases I, II, and III subunit rpabc3"	AT3G59600.1	RNA polymerase Rpb8 	LOC_Os06g48230.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed"	Medtr8g147760.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
Ptp.5752.1.S1_at	A	A1TS	POPTR_0005s26170	POPTR_0005s26170 (11)	scaffold_5:24246520-24246796(+) (11)	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.5754.1.S1_s_at	A	A1TS	POPTR_0015s01610	POPTR_0015s01610 (11)	scaffold_15:1005267-1005455(-) (11)	NA	Q9M3B0	Probable pectinesterase/pectinesterase inhibitor 34	AT3G49220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g13320.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.5755.1.S1_s_at	A	A1TS	POPTR_0009s13280	POPTR_0009s13280 (11)	scaffold_9:10617597-10617838(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5756.1.S1_a_at	A	A1TS	POPTR_0008s03570	POPTR_0008s03570 (11)	scaffold_8:1915305-1917389(+) (11)	NA	P61271	Ras-related protein Rab-5A	AT3G54840.1	Ras-related small GTP-binding family protein 	LOC_Os10g30520.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5756.2.S1_at	A	A1TS	POPTR_0010s23310	POPTR_0010s23310 (9)	scaffold_10:19929875-19929907(-) (9)	NA	P31583	Ras-related protein RHN1	AT3G54840.1	Ras-related small GTP-binding family protein 	LOC_Os10g30520.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5757.1.S1_at	A	A1TS	POPTR_0015s14200	POPTR_0015s14200 (11)	scaffold_15:13890004-13890093(-) (11)	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5757.1.S1_x_at	A	A1TS	POPTR_0015s14200	POPTR_0015s14200 (11)	scaffold_15:13889991-13890251(-) (11)	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5759.1.S1_s_at	A	A1TS	POPTR_0001s13330	POPTR_0001s13330 (11)	scaffold_1:10423953-10424307(+) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT5G21090.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g59440.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr7g005120.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.5760.1.S1_at	A	A1TS	POPTR_0006s26550	POPTR_0006s26550 (11)	scaffold_6:24731715-24732075(-) (11)	NA	Q9C944	Probable histone H2A variant 3	AT1G52740.1	histone H2A protein 9 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g013390.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.5762.1.S1_at	A	A1TS	POPTR_0011s01570	POPTR_0011s01570 (11)	scaffold_11:1105706-1105744(-) (11)	NA	NA	NA	AT4G22140.2	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os09g21770.1	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
Ptp.5764.1.S1_at	A	A1TS	POPTR_0009s12800	POPTR_0009s12800 (11)	scaffold_9:10380740-10380825(+) (11)	NA	P28475	NADP-dependent D-sorbitol-6-phosphate dehydrogenase	AT2G21250.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os02g03100.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g097480.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5764.1.S1_s_at	A	A1TS	POPTR_0009s12800	POPTR_0009s12800 (11)	scaffold_9:10380827-10381340(+) (11)	NA	P28475	NADP-dependent D-sorbitol-6-phosphate dehydrogenase	AT2G21250.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os02g03100.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g097480.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5765.1.S1_s_at	A	A2TS	POPTR_0001s45810	POPTR_0001s45810 (10)//POPTR_0001s45820 (9)	scaffold_1:46315991-46316024(-) (10)//scaffold_1:46320742-46328484(-) (10)//scaffold_1:46328461-46328493(-) (9)	NA	P49210	60S ribosomal protein L9	AT1G33140.1	Ribosomal protein L6 family 	LOC_Os09g31180.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5765.1.S1_x_at	A	A2TS	POPTR_0001s45810	POPTR_0001s45810 (11)//POPTR_0001s45820 (11)	scaffold_1:46315741-46317246(-) (11)//scaffold_1:46320504-46328483(-) (11)//scaffold_1:46328211-46329426(-) (9)	NA	P49210	60S ribosomal protein L9	AT1G33140.1	Ribosomal protein L6 family 	LOC_Os09g31180.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5765.3.S1_at	A	A1TA	POPTR_0016s02600	POPTR_0016s02600 (10)	scaffold_16:1281494-1282551(+) (10)	NA	Q93YF5	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1"	AT1G73100.1	SU(VAR)3-9 homolog 3 	LOC_Os05g41172.2	"histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed"	Medtr7g105180.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.5767.1.S1_at	A	A1TS	POPTR_0007s07320	POPTR_0007s07320 (10)	scaffold_7:5664785-5665481(-) (10)	NA	P54697	Myosin-J heavy chain	AT3G19960.1	myosin 1 	LOC_Os10g34710.1	"myosin-2 heavy chain, non muscle, putative, expressed"	Medtr1g046530.1	"IQ calmodulin-binding region; Myosin head, motor region "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
Ptp.5768.2.S1_a_at	A	A1TS	POPTR_0004s21300	POPTR_0004s21300 (11)	scaffold_4:20484930-20485666(-) (11)	NA	Q8VZB9	60S ribosomal protein L10a-1	AT1G08360.1	Ribosomal protein L1p/L10e family 	LOC_Os01g64090.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.5769.1.S1_at	A	A1TS	POPTR_0009s00620	POPTR_0009s00620 (11)	scaffold_9:666848-667855(+) (11)	NA	NA	NA	AT1G08480.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os08g02080.1	"rickettsia 17 kDa surface antigen family protein, expressed"	Medtr4g114250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5771.1.S1_at	A	A1TS	POPTR_0008s11660	POPTR_0008s11660 (9)	scaffold_8:7448863-7449630(+) (9)	NA	Q31QE7	ATP-dependent Clp protease adapter protein ClpS	AT1G68660.1	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 	LOC_Os08g33540.1	"ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed"	Medtr5g068520.1	ATP-dependent Clp protease adaptor protein ClpS 	GO:0030163|protein catabolic process||GO:0009057|macromolecule catabolic process	NA	NA
Ptp.5774.1.S1_at	A	A1TS	POPTR_0009s07150	POPTR_0009s07150 (11)	scaffold_9:6757081-6757125(+) (11)	NA	Q43594	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5776.1.S1_a_at	A	A2TS	POPTR_0004s00950	POPTR_0021s00350 (11)//POPTR_0004s00950 (11)	scaffold_21:102983-103560(-) (11)//scaffold_4:458825-459408(-) (11)//scaffold_4:479032-479619(-) (9)	POPTR_0004s00990 (8)	Q9ZS51	Peroxisomal membrane protein PMP22	AT4G04470.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os02g13270.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr1g090150.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
Ptp.5776.1.S1_s_at	A	A1TS	POPTR_0021s00350	POPTR_0021s00350 (11)	scaffold_21:102863-103819(-) (11)	POPTR_0004s00950 (8)	Q9ZS51	Peroxisomal membrane protein PMP22	AT4G04470.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os02g13270.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr1g090150.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
Ptp.5778.1.S1_at	A	A1TS	POPTR_0012s04090	POPTR_0012s04090 (10)	scaffold_12:3308851-3308884(+) (10)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.5778.1.S1_s_at	A	A1TS	POPTR_0012s04090	POPTR_0012s04090 (11)	scaffold_12:3308870-3309998(+) (11)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.5779.1.S1_s_at	A	A1TS	POPTR_0002s16970	POPTR_0002s16970 (11)	scaffold_2:12738705-12739256(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.578.1.A1_s_at	A	A1TS	POPTR_0607s00230	POPTR_0607s00230 (11)	scaffold_10:18906104-18906282(-) (11)//scaffold_607:7754-11560(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g06030.1	conserved hypothetical protein	Medtr7g135290.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5780.1.S1_a_at	A	A1TS	POPTR_0010s01660	POPTR_0010s01660 (11)	scaffold_10:1856755-1857800(-) (11)	NA	Q8G0J9	Probable peptidyl-prolyl cis-trans isomerase	AT1G26940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os11g38990.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g040220.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.5781.1.S1_at	A	A1TS	POPTR_0008s17560	POPTR_0008s17560 (10)	scaffold_8:11829821-11829854(+) (10)	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5781.1.S1_s_at	A	A1TS	POPTR_0008s17560	POPTR_0008s17560 (11)	scaffold_8:11829955-11830526(+) (11)	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5782.1.S1_at	A	A1TS	POPTR_0001s11720	POPTR_0001s11720 (11)	scaffold_1:9087179-9087660(+) (11)	NA	Q05737	GTP-binding protein YPTM2	AT1G02130.1	RAS 5 	LOC_Os01g08450.1	"ras-related protein, putative, expressed"	Medtr7g093170.1	"Ras GTPase; Sigma-54 factor, interaction region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5783.1.S1_at	A	A1TS	POPTR_0006s11850	POPTR_0006s11850 (10)	scaffold_6:9038035-9038792(-) (10)	NA	Q2JS42	Uridylate kinase	AT3G10030.1	aspartate/glutamate/uridylate kinase family protein 	LOC_Os04g33300.1	"amino acid kinase, putative, expressed"	Medtr1g073630.1	Aspartate/glutamate/uridylate kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
Ptp.5785.1.S1_s_at	A	A1TS	POPTR_0017s08570	POPTR_0017s08570 (11)	scaffold_17:7156449-7156882(+) (11)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT4G13850.3	glycine-rich RNA-binding protein 2 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g105170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5786.1.S1_s_at	A	A1TS	POPTR_0014s18960	POPTR_0014s18960 (11)	scaffold_14:16571767-16573572(-) (11)	NA	NA	NA	AT3G07170.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g30910.2	"SAM domain family protein, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5787.1.S1_at	A	A1TS	POPTR_0008s20370	POPTR_0008s20370 (10)	scaffold_8:14148939-14148972(-) (10)	NA	Q94A20	BI1-like protein	AT4G15470.1	Bax inhibitor-1 family protein 	LOC_Os05g33360.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr2g026190.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5787.1.S1_s_at	A	A1TS	POPTR_0008s20370	POPTR_0008s20370 (11)	scaffold_8:14149419-14149454(-) (11)	NA	Q94A20	BI1-like protein	AT4G15470.1	Bax inhibitor-1 family protein 	LOC_Os05g33360.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr2g026190.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5789.1.S1_at	A	A1TS	POPTR_0005s03690	POPTR_0005s03690 (11)	scaffold_5:2461053-2462574(+) (11)	NA	Q54TS4	Protein YIPF1 homolog	AT5G27490.1	Integral membrane Yip1 family protein 	LOC_Os01g42480.1	"Yip1 domain containing protein, expressed"	Medtr7g139390.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.579.1.A1_at	A	A1TS	POPTR_0001s01320	POPTR_0001s01320 (11)	scaffold_1:985558-985640(-) (11)	NA	NA	NA	AT4G19140.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51166.1	expressed protein	Medtr5g027030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5790.1.S1_s_at	A	A1TS	POPTR_0015s07100	POPTR_0015s07100 (11)	scaffold_15:8230044-8230528(+) (11)	NA	Q94KT8	Protein COBRA	AT5G60920.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os07g41310.1	"COBRA, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5791.1.S1_at	A	A1TS	POPTR_0004s17960	POPTR_0004s17960 (9)	scaffold_4:18003150-18003700(+) (11)	NA	O65351	Subtilisin-like protease	AT4G34980.1	subtilisin-like serine protease 2 	LOC_Os03g13930.1	"OsSub28 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.5793.1.S1_s_at	A	A1TS	POPTR_0008s13290	POPTR_0008s13290 (11)	scaffold_8:8709938-8710862(-) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.3	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5794.1.A1_at	A	A1TS	POPTR_0008s13270	POPTR_0008s13270 (10)	scaffold_8:8702179-8702408(+) (10)	NA	Q9W1X7	Mediator of RNA polymerase II transcription subunit 23	AT1G23230.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). 	LOC_Os02g49992.1	expressed protein	AC233676_14.1	hypothetical protein AC233676.2 65637-60727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5795.1.S1_at	A	A1TS	POPTR_0008s14650	POPTR_0008s14650 (9)	scaffold_8:9729249-9729411(+) (9)	NA	Q9ZTR1	Spermidine synthase 1	AT1G70310.1	spermidine synthase 2 	LOC_Os07g22600.1	"spermidine synthase, putative, expressed"	Medtr5g035800.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.5797.1.A1_at	A	A1TS	POPTR_0003s13440	POPTR_0003s13440 (11)	scaffold_3:13821956-13822344(-) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5798.1.S1_at	A	A1TS	POPTR_0002s24910	POPTR_0002s24910 (11)	scaffold_2:22121992-22122053(-) (11)	NA	NA	NA	AT3G07310.1	Protein of unknown function (DUF760) 	LOC_Os11g26890.2	expressed protein	Medtr8g012790.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5799.1.S1_at	A	A1TS	POPTR_0010s17280	POPTR_0010s17280 (11)	scaffold_10:15929881-15930830(+) (11)	NA	NA	NA	AT1G26750.1	unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g10650.1	expressed protein	Medtr2g104660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.580.1.A1_s_at	A	A1TS	POPTR_0005s18810	POPTR_0005s18810 (11)	scaffold_5:17115446-17116416(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G43100.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g40260.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr5g016240.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5801.1.S1_at	A	A1TS	POPTR_0008s18160	POPTR_0008s18160 (11)	scaffold_8:12173588-12174240(+) (11)	NA	NA	NA	AT1G24440.1	RING/U-box superfamily protein 	LOC_Os07g17400.2	"zinc finger, RING-type, putative, expressed"	Medtr3g102930.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5801.2.S1_a_at	A	A1TS	POPTR_0008s18160	POPTR_0008s18160 (11)	scaffold_8:12172284-12173259(+) (11)	NA	NA	NA	AT1G24440.1	RING/U-box superfamily protein 	LOC_Os07g17400.2	"zinc finger, RING-type, putative, expressed"	Medtr3g102930.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5802.1.S1_at	A	A1TS	POPTR_0001s39290	POPTR_0001s39290 (10)	scaffold_1:38495800-38496788(-) (10)	NA	P73555	Uncharacterized membrane protein sll0875	AT1G78620.1	"Protein of unknown function DUF92, transmembrane "	LOC_Os01g52864.2	"transmembrane protein, putative, expressed"	Medtr7g062060.1	"Protein of unknown function DUF92, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5803.1.S1_at	A	A1TS	POPTR_0011s12800	POPTR_0011s12800 (11)	scaffold_11:15488881-15492095(+) (11)	NA	NA	NA	AT1G11360.4	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g57450.1	"universal stress protein domain containing protein, putative, expressed"	Medtr2g103170.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.5804.1.S1_at	A	A1TS	POPTR_0008s15730	POPTR_0008s15730 (10)	scaffold_8:10487169-10488719(+) (10)	NA	Q8W108	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3"	AT4G14710.2	RmlC-like cupins superfamily protein 	LOC_Os03g06620.1	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed"	NA	NA	GO:0071267|L-methionine salvage||GO:0071265|L-methionine biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0019509|L-methionine salvage from methylthioadenosine||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction||GO:0009086|methionine biosynthetic process	GO:0046872|metal ion binding||GO:0051213|dioxygenase activity	NA
Ptp.5805.1.S1_at	A	A1TS	POPTR_0011s11260	POPTR_0011s11260 (11)	scaffold_11:13988372-13988448(+) (11)	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.5806.1.A1_at	A	A1TS	POPTR_0017s08430	POPTR_0017s08430 (10)	scaffold_17:6958858-6961864(+) (10)	NA	O96625	Actin-related protein 2/3 complex subunit 4	AT4G14147.1	protein binding 	LOC_Os03g63090.2	"actin-related protein 2/3 complex subunit 4, putative, expressed"	Medtr4g133580.1	ARP23 complex 20 kDa subunit 	GO:0030041|actin filament polymerization	NA	GO:0005856|cytoskeleton
Ptp.5807.1.A1_at	A	A1TS	POPTR_0013s08350	POPTR_0013s08350 (11)	scaffold_13:7433488-7434413(+) (11)	NA	Q9FFE0	Regulator of ribonuclease-like protein 2	AT5G16450.2	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os01g52460.2	"regulator of ribonuclease, putative, expressed"	Medtr7g089680.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5808.1.S1_at	A	A1TS	POPTR_0006s28350	POPTR_0006s28350 (11)	scaffold_6:26060053-26060368(-) (11)	NA	Q940T9	Zinc finger protein CONSTANS-LIKE 4	AT5G24930.1	CONSTANS-like 4 	LOC_Os04g42020.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr1g016230.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.581.1.S1_s_at	A	A1TS	POPTR_0018s01660	POPTR_0018s01660 (9)	scaffold_18:1527741-1528116(-) (9)	NA	O48781	SPX domain-containing protein 2	AT2G26660.1	SPX domain gene 2 	LOC_Os06g40120.1	"SPX domain containing protein, putative, expressed"	Medtr1g013760.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5810.1.S1_s_at	A	A2TS	POPTR_0008s02650	POPTR_0008s02650 (11)//POPTR_0010s24030 (11)	scaffold_10:20430130-20430455(+) (11)//scaffold_8:1341396-1341720(-) (11)	NA	Q9LZR3	Glucomannan 4-beta-mannosyltransferase 9	AT5G03760.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr1g073500.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5813.1.S1_at	A	A1TS	POPTR_0002s11400	POPTR_0002s11400 (11)	scaffold_2:8435223-8439524(+) (11)	NA	O04135	Homeobox protein knotted-1-like 2	AT4G08150.1	KNOTTED-like from Arabidopsis thaliana 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5813.1.S2_at	A	A1TS	POPTR_0002s11400	POPTR_0002s11400 (11)	scaffold_2:8439561-8439796(+) (11)	NA	O04135	Homeobox protein knotted-1-like 2	AT4G08150.1	KNOTTED-like from Arabidopsis thaliana 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5814.1.S1_s_at	A	A1TS	POPTR_0009s01400	POPTR_0009s01400 (11)	scaffold_9:1657954-1659210(+) (11)	NA	NA	NA	AT3G45050.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g51470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5817.1.S1_at	A	A1TS	POPTR_0015s10680	POPTR_0015s10680 (11)	scaffold_15:11540151-11540483(+) (11)	NA	Q8LBB2	SNF1-related protein kinase regulatory subunit gamma 1	AT3G48530.1	SNF1-related protein kinase regulatory subunit gamma 1 	LOC_Os04g31340.1	"CBS domain containing membrane protein, putative, expressed"	Medtr8g109260.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5817.2.S1_at	A	A1MS	POPTR_0015s10680	POPTR_0015s10680 (9)	scaffold_15:11539658-11539881(+) (9)	NA	Q8LBB2	SNF1-related protein kinase regulatory subunit gamma 1	AT3G48530.1	SNF1-related protein kinase regulatory subunit gamma 1 	LOC_Os04g31340.1	"CBS domain containing membrane protein, putative, expressed"	Medtr8g109260.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5818.1.S1_s_at	A	A1TS	POPTR_0011s14300	POPTR_0011s14300 (11)	scaffold_11:16749182-16749341(-) (11)	NA	P52758	Ribonuclease UK114	AT3G20390.1	endoribonuclease L-PSP family protein 	LOC_Os07g33240.1	"endoribonuclease, putative, expressed"	Medtr5g100060.1	YjgF-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5819.1.S1_at	A	A1TS	POPTR_0006s08660	POPTR_0006s08660 (9)	scaffold_6:6346186-6347608(+) (9)	NA	Q9SR33	Oxysterol-binding protein-related protein 3B	AT3G09300.1	OSBP(oxysterol binding protein)-related protein 3B 	LOC_Os03g16690.1	"oxysterol-binding protein, putative, expressed"	Medtr4g083830.1	Oxysterol-binding protein 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
Ptp.5820.1.S1_s_at	A	A1TS	POPTR_0016s00320	POPTR_0016s00320 (11)	scaffold_16:52108-52826(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT3G24120.1	Homeodomain-like superfamily protein 	LOC_Os08g25799.1	"Myb transcription factor, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5821.1.S1_at	A	A1TS	POPTR_0007s02160	POPTR_0007s02160 (11)	scaffold_7:1281733-1283057(-) (11)	NA	O04922	Probable glutathione peroxidase 2	AT2G31570.1	glutathione peroxidase 2 	LOC_Os11g18170.1	"glutathione peroxidase, putative, expressed"	Medtr4g156860.1	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
Ptp.5822.1.S1_s_at	A	A1TS	POPTR_0002s07600	POPTR_0002s07600 (11)	scaffold_2:5196497-5197675(+) (11)	NA	NA	NA	AT1G76980.1	BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5824.2.S1_a_at	A	A1TS	POPTR_0006s26070	POPTR_0006s26070 (11)	scaffold_6:24368951-24369453(-) (11)	NA	O31607	Group 2 truncated hemoglobin yjbI	AT4G32690.1	hemoglobin 3 	LOC_Os06g39140.1	"hemoglobin-like protein HbO, putative, expressed"	Medtr1g009840.1	Globin-related 	GO:0015671|oxygen transport	GO:0019825|oxygen binding	NA
Ptp.5825.1.S1_at	A	A1TS	POPTR_0018s01790	POPTR_0018s01790 (11)	scaffold_18:1634210-1634246(-) (11)	NA	Q8LF20	Putative clathrin assembly protein At2g25430	AT2G25430.1	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr3g137180.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
Ptp.5826.1.S1_at	A	A1TS	POPTR_0009s09570	POPTR_0009s09570 (11)	scaffold_9:8430404-8430878(+) (11)	NA	O64628	Thioredoxin domain-containing protein 9 homolog	AT2G18990.1	thioredoxin domain-containing protein 9 homolog 	LOC_Os08g15204.1	"thioredoxin domain-containing protein 9, putative, expressed"	Medtr8g092810.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5829.1.S1_at	A	A1TS	POPTR_0004s19810	POPTR_0004s19810 (10)	scaffold_4:19529653-19530855(+) (10)	NA	NA	NA	AT2G27740.1	Family of unknown function (DUF662)  	LOC_Os04g33450.2	expressed protein	Medtr7g126780.2	Protein of unknown function DUF662 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.583.1.S1_s_at	A	A1TS	POPTR_0003s13810	POPTR_0003s13810 (11)	scaffold_3:14086405-14087097(+) (11)	NA	A7YY75	Nucleoporin SEH1	AT1G64350.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g43250.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g076630.1	"seh1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5830.1.S1_at	A	A1TS	POPTR_0005s15800	POPTR_0005s15800 (11)	scaffold_5:12393403-12394373(-) (11)	NA	Q641Z5	Cation transport regulator-like protein 2	AT1G44790.1	ChaC-like family protein 	LOC_Os04g37580.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr1g037330.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5832.1.S1_at	A	A1TS	POPTR_0010s20000	POPTR_0010s20000 (11)	scaffold_10:17747519-17749052(+) (11)	NA	Q76P23	Mitochondrial substrate carrier family protein Q	AT2G39970.1	Mitochondrial substrate carrier family protein 	LOC_Os03g15860.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g089250.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5833.1.S1_at	A	A1TS	POPTR_0006s19200	POPTR_0006s19200 (11)	scaffold_6:18180042-18180311(-) (11)	NA	NA	NA	AT1G67170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). 	LOC_Os04g40300.1	"transglutaminase, putative, expressed"	Medtr2g071550.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5834.1.A1_s_at	A	A1TS	POPTR_0008s12480	POPTR_0008s12480 (11)	scaffold_8:8073148-8073645(+) (11)	NA	Q9ZU52	"Probable fructose-bisphosphate aldolase 3, chloroplastic"	AT2G01140.1	Aldolase superfamily protein 	LOC_Os01g02880.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.5835.1.S1_at	A	A1TS	POPTR_0002s03600	POPTR_0002s03600 (11)	scaffold_2:2239656-2240047(+) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT1G47270.2	tubby like protein 6 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5836.1.S1_at	A	A1TS	POPTR_0002s06240	POPTR_0002s06240 (10)	scaffold_2:4176668-4177781(+) (10)	NA	Q6YYB0	Uncharacterized protein Os08g0359500	AT4G02450.2	HSP20-like chaperones superfamily protein 	LOC_Os03g26460.1	"CS domain containing protein, putative, expressed"	Medtr6g033380.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5837.1.S1_at	A	A1TS	POPTR_0002s03770	POPTR_0002s03770 (9)	scaffold_2:2346089-2346395(-) (9)	NA	Q681Q7	Uncharacterized protein At1g03900	AT1G03900.1	non-intrinsic ABC protein 4 	LOC_Os10g33630.2	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
Ptp.5838.1.S1_at	A	A1TS	POPTR_0002s03700	POPTR_0002s03700 (11)	scaffold_2:2295739-2295888(+) (11)	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os02g40880.1	"ribosomal protein L14, putative, expressed"	Medtr1g090300.1	Ribosomal protein L14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5838.1.S1_s_at	A	A2TS	POPTR_0002s03700	POPTR_0002s03700 (11)//POPTR_0005s24890 (10)	scaffold_2:2294151-2295753(+) (11)//scaffold_5:23312411-23313986(-) (10)	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os02g40880.1	"ribosomal protein L14, putative, expressed"	Medtr1g090300.1	Ribosomal protein L14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5839.1.S1_s_at	A	A1TS	POPTR_0005s18840	POPTR_0005s18840 (11)	scaffold_5:17174115-17175347(-) (11)	NA	Q9FPR2	Lysine-rich arabinogalactan protein 18	AT4G37450.1	arabinogalactan protein  18 	NA	NA	Medtr8g099180.1	"Lysine-rich arabinogalactan protein 18 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.584.1.A1_at	A	A1TS	POPTR_0014s13640	POPTR_0014s13640 (10)	scaffold_14:10009402-10009646(+) (10)	NA	Q9XIW1	Probable xyloglucan endotransglucosylase/hydrolase protein 5	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099550.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.5840.2.S1_a_at	A	A1TS	POPTR_0013s13320	POPTR_0013s13320 (11)	scaffold_13:13831778-13832157(-) (11)	NA	P27527	"Ribosomal protein S19, mitochondrial"	AT5G47320.1	ribosomal protein S19 	NA	NA	Medtr5g092650.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5841.1.S1_at	A	A1TS	POPTR_0005s21810	POPTR_0005s21810 (11)	scaffold_5:20881657-20883595(-) (11)	NA	NA	NA	AT1G22790.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g40700.1	expressed protein	Medtr1g124750.1	"T22J18.4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5842.1.A1_s_at	A	A1TS	POPTR_0008s19970	POPTR_0008s19970 (11)	scaffold_8:13792250-13792545(-) (11)	NA	Q8VY21	Tubby-like F-box protein 3	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5842.2.A1_s_at	A	A1TS	POPTR_0008s19970	POPTR_0008s19970 (11)	scaffold_8:13792197-13792361(-) (11)	NA	Q8VY21	Tubby-like F-box protein 3	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5842.3.S1_at	A	A1MS	POPTR_0008s19970	POPTR_0008s19970 (11)	scaffold_8:13792864-13793039(-) (11)	NA	Q8VY21	Tubby-like F-box protein 3	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5843.1.S1_s_at	A	A1TS	POPTR_0015s02540	POPTR_0015s02540 (11)	scaffold_15:1824208-1824603(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G18490.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g04710.1	"aspartic proteinase, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5844.1.S1_s_at	A	A1TS	POPTR_0008s05320	POPTR_0008s05320 (11)	scaffold_8:3091477-3093066(-) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT2G28760.3	UDP-XYL synthase 6 	LOC_Os03g16980.2	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr2g114640.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.5845.1.S1_s_at	A	A1TS	POPTR_0008s00310	POPTR_0008s00310 (11)	scaffold_8:91660-92115(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT5G08570.1	Pyruvate kinase family protein 	LOC_Os04g58110.1	"pyruvate kinase, putative, expressed"	Medtr4g115180.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.5846.1.S1_s_at	A	A1TS	POPTR_0004s11780	POPTR_0004s11780 (11)	scaffold_4:10652351-10652913(+) (11)	NA	Q9FNP8	40S ribosomal protein S19-3	AT5G61170.1	Ribosomal protein S19e family protein 	LOC_Os03g31134.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g005130.1	Ribosomal protein S19e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5847.1.S1_at	A	A1TS	POPTR_0011s14290	POPTR_0011s14290 (11)	scaffold_11:16743814-16747517(-) (11)	NA	Q55BI3	Ubiquitin thioesterase OTU1	AT1G50670.1	OTU-like cysteine protease family protein 	LOC_Os02g06890.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr5g100030.1	"Ovarian tumour, otubain; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5848.1.S1_s_at	A	A1TS	POPTR_0006s23360	POPTR_0006s23360 (11)	scaffold_6:22112951-22113331(-) (11)	NA	Q8H7N9	E3 ubiquitin-protein ligase Os03g0188200	AT5G20885.1	RING/U-box superfamily protein 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.585.1.S1_s_at	A	A1TS	POPTR_0016s02100	POPTR_0016s02100 (11)	scaffold_16:1015325-1015500(+) (11)	NA	Q7ZUW2	Hypoxia up-regulated protein 1	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g48110.1	"DnaK family protein, putative, expressed"	Medtr3g068340.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5850.1.S1_s_at	A	A1TS	POPTR_0002s25050	POPTR_0002s25050 (11)	scaffold_2:22249708-22249746(-) (11)	NA	P49211	60S ribosomal protein L32-1	AT4G18100.1	Ribosomal protein L32e 	LOC_Os09g32532.2	"60S ribosomal protein L32, putative, expressed"	Medtr4g134080.1	Ribosomal protein L32e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5851.1.S1_s_at	A	A1TS	POPTR_0019s09090	POPTR_0019s09090 (11)	scaffold_19:10654693-10656004(+) (11)	NA	O24496	Hydroxyacylglutathione hydrolase cytoplasmic	AT3G10850.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os03g21460.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr5g077130.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5852.1.S1_at	A	A1TS	POPTR_0015s04240	POPTR_0015s04240 (11)	scaffold_15:4291685-4296007(-) (11)	NA	Q60HE1	Peroxisomal biogenesis factor 3	AT1G48635.1	peroxin 3 	LOC_Os09g14510.1	"peroxin-3 family protein, putative, expressed"	Medtr4g155490.1	Peroxin-3 	GO:0007031|peroxisome organization	NA	GO:0005779|integral to peroxisomal membrane
Ptp.5855.1.S1_at	A	A1TS	POPTR_0001s36690	POPTR_0001s36690 (9)	scaffold_1:35390160-35390515(+) (9)	NA	Q12872	"Splicing factor, arginine/serine-rich 8"	AT5G55100.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 	LOC_Os01g50320.1	"surp module family protein, putative, expressed"	Medtr5g100990.1	SWAP/Surp 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.5856.1.S1_s_at	A	A1TS	POPTR_0015s05230	POPTR_0015s05230 (11)	scaffold_15:5596751-5596958(-) (11)	NA	P27161	Calmodulin	AT5G37780.1	calmodulin 1 	LOC_Os05g41210.1	"OsCam2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5856.2.S1_s_at	A	A1MS	POPTR_0015s05230	POPTR_0015s05230 (11)	scaffold_15:5597326-5597452(-) (11)	NA	P27161	Calmodulin	AT5G37780.1	calmodulin 1 	LOC_Os05g41210.1	"OsCam2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5859.3.S1_s_at	A	A1TS	POPTR_0007s13930	POPTR_0007s13930 (11)	scaffold_7:13924118-13924728(-) (11)	NA	P40267	Histone H1	AT2G18050.1	histone H1-3 	LOC_Os06g04020.1	"histone H1, putative, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.5861.1.S1_s_at	A	A1TS	POPTR_0006s23940	POPTR_0006s23940 (11)	scaffold_6:22664757-22666681(-) (11)	NA	Q5SRE7	Phytanoyl-CoA dioxygenase domain-containing protein 1	AT2G01490.1	phytanoyl-CoA dioxygenase (PhyH) family protein 	LOC_Os05g39650.1	"phytanoyl-CoA dioxygenase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5863.1.S1_a_at	A	A1TS	POPTR_0007s14080	POPTR_0007s14080 (11)	scaffold_7:13993098-13993512(-) (11)	NA	NA	NA	AT2G17990.1	BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to 6129 proteins in 783 species: Archae - 220; Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI BLink). 	LOC_Os06g50146.1	"calcium-dependent protein kinase CPK1 adapter protein 2, putative, expressed"	Medtr8g090110.1	"Calcium-dependent protein kinase CPK1 adapter protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5865.1.A1_at	A	A1TS	POPTR_0002s16950	POPTR_0002s16950 (11)	scaffold_2:12688032-12689141(-) (11)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5866.1.S1_s_at	A	A2TS	POPTR_0011s15080	POPTR_0011s15170 (11)//POPTR_0011s15080 (11)	scaffold_11:17268726-17268822(+) (11)//scaffold_11:17311845-17311941(-) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5867.1.S1_at	A	A1TS	POPTR_0005s25300	POPTR_0005s25300 (11)	scaffold_5:23606105-23606140(-) (11)	NA	NA	NA	AT1G04940.1	translocon at the inner envelope membrane of chloroplasts 20 	LOC_Os07g38110.2	"tic20, putative, expressed"	Medtr5g024740.1	"Tic20-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5867.1.S1_s_at	A	A2TS	POPTR_0002s03320	POPTR_0002s03320 (11)//POPTR_0005s25300 (11)	scaffold_2:2033163-2033386(+) (11)//scaffold_5:23606370-23606593(-) (11)	NA	NA	NA	AT1G04940.1	translocon at the inner envelope membrane of chloroplasts 20 	LOC_Os07g38110.2	"tic20, putative, expressed"	Medtr5g024740.1	"Tic20-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5868.1.S1_s_at	A	A1TS	POPTR_0011s12340	POPTR_0011s12340 (11)	scaffold_11:15072807-15074333(-) (11)	NA	NA	NA	AT4G27435.1	Protein of unknown function (DUF1218) 	LOC_Os07g27810.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5869.2.A1_at	A	A1TA	POPTR_0002s20810	POPTR_0002s20810 (10)	scaffold_2:17021613-17022027(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.587.1.A1_s_at	A	A1TS	POPTR_0006s09160	POPTR_0006s09160 (11)	scaffold_6:6768857-6769420(+) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os01g62870.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5870.1.S1_at	A	A1TS	POPTR_0013s08150	POPTR_0013s08150 (10)	scaffold_13:7142457-7143133(+) (10)	NA	Q9VFP2	Protein roadkill	AT3G56230.1	BTB/POZ domain-containing protein 	LOC_Os12g02030.1	"BTB9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr3g097300.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
Ptp.5871.1.S1_at	A	A1TS	POPTR_0004s07320	POPTR_0004s07320 (11)	scaffold_4:6051993-6052774(+) (11)	NA	P50218	Isocitrate dehydrogenase [NADP]	AT1G65930.1	cytosolic NADP+-dependent isocitrate dehydrogenase 	LOC_Os01g46610.1	"dehydrogenase, putative, expressed"	Medtr5g084930.1	"Isocitrate dehydrogenase NADP-dependent, plant "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.5873.1.A1_a_at	A	A1TS	POPTR_0009s06320	POPTR_0009s06320 (11)	scaffold_9:6116895-6117120(+) (11)	NA	P54802	Alpha-N-acetylglucosaminidase	AT5G13690.1	alpha-N-acetylglucosaminidase family / NAGLU family 	LOC_Os04g55730.1	"alpha-N-acetylglucosaminidase, putative, expressed"	Medtr3g039850.1	Alpha-N-acetylglucosaminidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5873.2.A1_s_at	A	A1TS	POPTR_0009s06320	POPTR_0009s06320 (11)	scaffold_9:6117106-6117515(+) (11)	NA	P54802	Alpha-N-acetylglucosaminidase	AT5G13690.1	alpha-N-acetylglucosaminidase family / NAGLU family 	LOC_Os04g55730.1	"alpha-N-acetylglucosaminidase, putative, expressed"	Medtr3g039850.1	Alpha-N-acetylglucosaminidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5877.1.S1_at	A	A1TS	POPTR_0002s02020	POPTR_0002s02020 (11)	scaffold_2:1079411-1079486(-) (11)	NA	Q9FHW7	SKP1-like protein 1B	AT5G42190.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 	LOC_Os11g26910.1	"SKP1-like protein 1B, putative, expressed"	Medtr5g022610.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.5878.1.S1_at	A	A1TS	POPTR_0018s11770	POPTR_0018s11770 (10)	scaffold_18:12426427-12426944(+) (10)	NA	O65554	CBL-interacting serine/threonine-protein kinase 6	AT4G30960.1	SOS3-interacting protein 3 	LOC_Os01g10890.1	"CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g145620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.588.1.A1_s_at	A	A1TS	POPTR_0005s18950	POPTR_0005s18950 (11)	scaffold_5:17446198-17446389(+) (11)	NA	Q08467	Casein kinase II subunit alpha-1	AT5G67380.1	casein kinase alpha 1 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr8g099310.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.588.2.A1_at	A	A1TS	POPTR_0007s10100	POPTR_0007s10100 (9)	scaffold_7:9830549-9830662(+) (11)	NA	Q08467	Casein kinase II subunit alpha-1	AT5G67380.1	casein kinase alpha 1 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr8g099310.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.588.2.A1_s_at	A	A1TS	POPTR_0007s10100	POPTR_0007s10100 (11)	scaffold_7:9830232-9830519(+) (11)	NA	Q08467	Casein kinase II subunit alpha-1	AT5G67380.1	casein kinase alpha 1 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr8g099310.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5880.1.S1_at	A	A1TS	POPTR_0003s08580	POPTR_0003s08580 (9)	scaffold_3:9968261-9970305(-) (9)	NA	Q9AST6	Vacuolar protein sorting-associated protein 55 homolog	AT1G32410.5	Vacuolar protein sorting 55 (VPS55) family protein 	LOC_Os02g55980.1	"vacuolar protein sorting 55 family protein, putative, expressed"	Medtr5g014160.1	Vacuolar protein sorting 55 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5881.1.S1_at	A	A1TS	POPTR_0004s07650	POPTR_0004s07650 (11)	scaffold_4:6281198-6283932(-) (11)	NA	P20290	Transcription factor BTF3	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5882.1.S1_at	A	A1TS	POPTR_0002s25150	POPTR_0002s25150 (9)	scaffold_2:22338626-22339606(+) (9)	NA	Q91VC0	dCTP pyrophosphatase 1	AT3G25400.1	"CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). "	LOC_Os02g27810.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	Medtr7g046000.1	MazG nucleotide pyrophosphohydrolase; Pyrophosphohydrolase MazG RS21-C6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5883.1.S1_at	A	A1TS	POPTR_0008s16890	POPTR_0008s16890 (11)	scaffold_8:11347556-11348550(-) (11)	NA	Q9LW57	"Probable plastid-lipid-associated protein 6, chloroplastic"	AT3G23400.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os11g38260.1	"PAP fibrillin family domain containing protein, expressed"	Medtr1g090230.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
Ptp.5885.1.S1_s_at	A	A1TS	POPTR_0001s22980	POPTR_0001s22980 (11)	scaffold_1:22028196-22029494(-) (11)	NA	P93171	Calmodulin	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5887.1.S1_at	A	A1TS	POPTR_0003s16610	POPTR_0003s16610 (11)	scaffold_3:16184408-16184718(+) (11)	NA	Q9ASS6	"Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic"	AT5G13120.1	cyclophilin 20-2 	LOC_Os05g01270.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr7g134340.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.5888.2.S1_a_at	A	A1TS	POPTR_0010s26110	POPTR_0010s26110 (11)	scaffold_10:21456403-21457443(-) (11)	POPTR_0008s00390 (8)	Q8LSN3	Phytochrome-associated serine/threonine protein phosphatase	AT1G50370.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g49690.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g047030.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.589.1.S1_at	A	A1TS	POPTR_0013s01300	POPTR_0013s01300 (9)	scaffold_13:728291-728826(+) (10)	NA	O80492	Probable protein phosphatase 2C 5	AT1G09160.1	Protein phosphatase 2C family protein 	LOC_Os07g49040.1	"protein phosphotase protein, putative, expressed"	Medtr7g138020.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5890.1.S1_at	A	A1TS	POPTR_0017s13910	POPTR_0017s13910 (11)	scaffold_17:14087791-14088505(-) (11)	NA	NA	NA	AT5G16030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5893.1.S1_s_at	A	A1TS	POPTR_0001s04350	POPTR_0001s04350 (11)	scaffold_1:3452550-3453756(+) (11)	NA	Q8WXF0	Serine/arginine-rich splicing factor 12	AT3G13570.1	SC35-like splicing factor 30A 	LOC_Os03g25770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5894.1.S1_s_at	A	A1TS	POPTR_0003s05150	POPTR_0003s05150 (11)	scaffold_3:6357694-6357819(+) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009370.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.5895.1.S1_s_at	A	A1TS	POPTR_0001s21740	POPTR_0001s21740 (11)	scaffold_1:20255870-20256111(-) (11)	NA	P27524	"Chlorophyll a-b binding protein CP24 10A, chloroplastic"	AT1G15820.1	light harvesting complex photosystem II subunit 6 	LOC_Os04g38410.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g008680.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.5896.1.S1_at	A	A1TS	POPTR_0008s19960	POPTR_0008s19960 (11)	scaffold_8:13786748-13788246(+) (11)	NA	P55229	"Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic"	AT5G19220.1	ADP glucose pyrophosphorylase large subunit 1 	LOC_Os03g52460.1	"glucose-1-phosphate adenylyltransferase large subunit, putative, expressed"	Medtr8g146330.1	Nucleotidyl transferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.5897.1.S1_at	A	A1TS	POPTR_0001s33750	POPTR_0001s33750 (11)	scaffold_1:31915355-31916348(+) (11)	NA	Q9CLV5	Naphthoate synthase	AT1G60550.1	enoyl-CoA hydratase/isomerase D 	LOC_Os01g47350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g074190.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.5898.1.S1_s_at	A	A2TS	POPTR_0004s23310	POPTR_0004s23310 (11)//POPTR_0022s00530 (11)	scaffold_22:208370-209246(-) (11)//scaffold_4:22091301-22092027(+) (11)	NA	Q02028	"Stromal 70 kDa heat shock-related protein, chloroplastic"	AT5G49910.1	chloroplast heat shock protein 70-2 	LOC_Os12g14070.1	"DnaK family protein, putative, expressed"	Medtr2g005480.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5899.1.S1_s_at	A	A2TS	POPTR_0006s20090	POPTR_0018s11820 (11)//POPTR_0006s20090 (11)	scaffold_18:12488906-12489850(-) (11)//scaffold_6:19168878-19170353(-) (11)	NA	P93338	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	AT2G24270.3	aldehyde dehydrogenase 11A3 	LOC_Os08g34210.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g145740.1	"NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.590.1.S1_at	A	A1TS	POPTR_0004s22340	POPTR_0004s22340 (9)	scaffold_4:21257035-21257591(+) (9)	NA	P21239	"RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment)"	AT2G28000.1	chaperonin-60alpha 	LOC_Os12g17910.1	"T-complex protein, putative, expressed"	AC233663_8.1	Chaperonin Cpn60 AC233663.2 79149-81923 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5900.2.S1_a_at	A	A1TS	POPTR_0005s10780	POPTR_0005s10780 (11)	scaffold_5:7738222-7738789(+) (11)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT4G35785.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g50890.1	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5900.2.S1_at	A	A1MS	POPTR_0005s10780	POPTR_0005s10780 (10)	scaffold_5:7738918-7739093(+) (10)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT4G35785.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g50890.1	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5902.1.S1_s_at	A	A4TS	POPTR_0014s19070	POPTR_0014s19530 (10)//POPTR_0014s19510 (10)//POPTR_0014s19070 (10)//POPTR_0014s19300 (9)	scaffold_14:16826556-16826985(-) (10)//scaffold_14:17202647-17203078(-) (10)//scaffold_14:17327419-17327851(+) (10)//scaffold_14:17361845-17362277(+) (10)	NA	O95243	Methyl-CpG-binding domain protein 4	AT3G07930.3	DNA glycosylase superfamily protein 	LOC_Os09g01290.1	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	NA	NA	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
Ptp.5904.1.S1_s_at	A	A1TS	POPTR_0006s08760	POPTR_0006s08760 (10)	scaffold_6:6447708-6448296(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5905.1.S1_at	A	A1TS	POPTR_0008s01200	POPTR_0008s01200 (9)	scaffold_8:577362-577834(+) (9)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20790.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.5906.1.S1_at	A	A1TS	POPTR_0018s01720	POPTR_0018s01720 (11)	scaffold_18:1572313-1573098(-) (11)	NA	Q9SUI5	"Photosystem I reaction center subunit psaK, chloroplastic"	AT1G30380.1	photosystem I subunit K 	LOC_Os07g05480.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
Ptp.5907.1.S1_at	A	A1TS	POPTR_0001s26940	POPTR_0001s26940 (11)	scaffold_1:25921507-25922913(-) (11)	NA	NA	NA	AT3G52040.1	unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g16550.1	expressed protein	Medtr8g105920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5908.1.S1_at	A	A1TS	POPTR_0004s17630	POPTR_0004s17630 (9)	scaffold_4:17752548-17752928(+) (9)	NA	NA	NA	AT4G38710.1	glycine-rich protein 	LOC_Os02g24330.1	"eukaryotic translation initiation factor 4B, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5909.1.S1_x_at	A	A1TS	POPTR_0010s06190	POPTR_0010s06190 (11)	scaffold_10:7608452-7608971(+) (11)	NA	P80470	"Photosystem II core complex proteins psbY, chloroplastic"	AT1G67740.1	photosystem II BY 	LOC_Os08g02630.1	"photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed"	Medtr3g102830.1	"Photosystem II core complex proteins psbY, chloroplast precursor, putative "	GO:0015979|photosynthesis	GO:0030145|manganese ion binding	GO:0016021|integral to membrane||GO:0009523|photosystem II
Ptp.5911.1.S1_s_at	A	A1TS	POPTR_0003s05110	POPTR_0003s05110 (11)	scaffold_3:6330397-6331926(+) (11)	NA	Q9SUI6	"Photosystem I reaction center subunit VI-2, chloroplastic"	AT1G52230.1	photosystem I subunit H2 	LOC_Os05g48630.2	expressed protein	Medtr2g122810.1	Photosystem I reaction centre subunit VI 	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
Ptp.5913.1.S1_at	A	A1TS	POPTR_0004s04700	POPTR_0004s04700 (11)	scaffold_4:3445015-3445484(+) (11)	NA	Q94ID6	Ethylene-responsive transcription factor 12	AT1G28360.1	ERF domain protein 12 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr2g017810.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.5913.1.S1_s_at	A	A1TS	POPTR_0004s04700	POPTR_0004s04700 (11)	scaffold_4:3445138-3445374(+) (11)	NA	Q94ID6	Ethylene-responsive transcription factor 12	AT1G28360.1	ERF domain protein 12 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr2g017810.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.5915.1.S1_s_at	A	A1TS	POPTR_0014s09180	POPTR_0014s09180 (11)	scaffold_14:6808931-6809431(+) (11)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008800.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5916.1.A1_s_at	A	A1TS	POPTR_0005s27550	POPTR_0005s27550 (11)	scaffold_5:25159130-25159641(-) (11)	POPTR_0002s00840 (6)	P12859	"Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic"	AT1G42970.1	glyceraldehyde-3-phosphate dehydrogenase B subunit 	LOC_Os03g03720.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g160060.1	"Protein of unknown function CP12; Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.5917.1.A1_at	A	A1TS	POPTR_0004s20790	POPTR_0004s20790 (11)	scaffold_4:20190826-20191782(-) (11)	NA	Q9ZE28	Uncharacterized protein RP120	AT5G22350.1	Protein of unknown function (DUF1022) 	LOC_Os02g33230.1	"nucleoside-diphosphate-sugar epimerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5918.2.S1_a_at	A	A1TS	POPTR_0005s22830	POPTR_0005s22830 (11)	scaffold_5:21716305-21717157(-) (11)	NA	Q9SLQ8	"Oxygen-evolving enhancer protein 2, chloroplastic"	AT1G06680.1	photosystem II subunit P-1 	LOC_Os07g04840.1	"PsbP, putative, expressed"	Medtr5g097510.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.5919.2.S1_a_at	A	A1TS	POPTR_0007s10200	POPTR_0007s10200 (11)	scaffold_7:9956076-9956329(-) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT4G37470.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g32270.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g099190.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.592.2.A1_at	A	A1MS	POPTR_0010s01680	POPTR_0010s01680 (11)	scaffold_10:1868973-1869070(-) (11)	NA	Q9FH28	Chaperone protein dnaJ 49	AT5G49060.1	"Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) "	LOC_Os05g30130.1	"chaperone protein dnaJ 49, putative, expressed"	Medtr7g139960.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.592.2.A1_s_at	A	A1TS	POPTR_0010s01680	POPTR_0010s01680 (11)	scaffold_10:1869056-1869355(-) (11)	NA	Q9FH28	Chaperone protein dnaJ 49	AT5G49060.1	"Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) "	LOC_Os05g30130.1	"chaperone protein dnaJ 49, putative, expressed"	Medtr7g139960.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.5920.1.S1_at	A	A1TS	POPTR_0006s08800	POPTR_0006s08800 (11)	scaffold_6:6479988-6480798(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5922.1.S1_s_at	A	A1TS	POPTR_0001s13100	POPTR_0001s13100 (11)	scaffold_1:10183287-10183996(+) (11)	NA	Q03200	Light-regulated protein	AT3G26740.1	CCR-like 	LOC_Os01g01340.1	"light-induced protein 1-like, putative, expressed"	Medtr7g096990.1	Light regulated Lir1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5925.2.S1_a_at	A	A4TS	POPTR_0002s23510	POPTR_0002s23510 (11)//POPTR_0002s23530 (11)//POPTR_0166s00200 (11)//POPTR_0166s00210 (10)	scaffold_166:6731-6938(-) (11)//scaffold_166:31618-31825(-) (11)//scaffold_2:21037368-21037575(-) (11)//scaffold_2:21074218-21074425(-) (11)	NA	P40691	Auxin-induced protein PCNT115	AT1G60690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g26910.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g021880.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5926.2.S1_at	A	A1MS	POPTR_0003s16490	POPTR_0003s16490 (9)	scaffold_3:16086813-16087012(-) (9)	NA	Q53NF7	NAC domain-containing protein 71	AT5G13180.1	NAC domain containing protein 83 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.5927.1.S1_s_at	A	A1TS	POPTR_0006s05130	POPTR_0006s05130 (11)	scaffold_6:3562577-3563007(-) (11)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5928.1.S1_at	A	A1TS	POPTR_0005s06420	POPTR_0005s06420 (11)	scaffold_5:4287287-4287792(+) (11)	NA	P49107	"Photosystem I reaction center subunit N, chloroplastic"	AT5G64040.1	"photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) "	LOC_Os12g08770.1	"photosystem I reaction center subunit N, chloroplast precursor, putative, expressed"	Medtr3g144130.1	Photosystem I reaction centre subunit N 	GO:0015979|photosynthesis	GO:0005515|protein binding	GO:0042651|thylakoid membrane||GO:0009522|photosystem I
Ptp.5929.1.S1_at	A	A1TS	POPTR_0014s10550	POPTR_0014s10550 (11)	scaffold_14:7869776-7870314(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5929.1.S1_s_at	A	A1TS	POPTR_0014s10550	POPTR_0014s10550 (11)	scaffold_14:7870301-7871032(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5930.1.S1_s_at	A	A1TS	POPTR_0005s16180	POPTR_0005s16180 (11)	scaffold_5:12859747-12860222(+) (11)	NA	P36859	Nitrate reductase [NADH]	AT1G37130.1	nitrate reductase 2 	LOC_Os08g36480.1	"nitrate reductase, putative, expressed"	Medtr3g098350.1	Mo-co oxidoreductase dimerisation domain 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0030151|molybdenum ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.5932.1.S1_s_at	A	A1TS	POPTR_0010s19610	POPTR_0010s19610 (11)	scaffold_10:17490091-17491134(-) (11)	NA	Q39033	Phosphoinositide phospholipase C 2	AT3G08510.2	phospholipase C 2 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr3g093840.1	C2; EF-Hand type; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
Ptp.5933.1.S1_s_at	A	A1TS	POPTR_0001s27960	POPTR_0001s27960 (11)	scaffold_1:26794775-26794819(+) (11)	NA	P18025	Tubulin beta-1 chain	AT5G62700.1	tubulin beta chain 3 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5933.1.S1_x_at	A	A1TS	POPTR_0001s27960	POPTR_0001s27960 (10)	scaffold_1:26793622-26794821(+) (10)	NA	P18025	Tubulin beta-1 chain	AT5G62700.1	tubulin beta chain 3 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5934.1.S1_s_at	A	A1TS	POPTR_0002s09930	POPTR_0002s09930 (11)	scaffold_2:7122442-7122962(+) (11)	NA	Q9ZPE4	F-box protein FBW2	AT4G08980.5	F-BOX WITH WD-40 2 	LOC_Os02g52130.9	"OsFBX61 - F-box domain containing protein, expressed"	Medtr5g073570.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5935.1.S1_at	A	A1TS	POPTR_0002s25390	POPTR_0002s25390 (11)	scaffold_2:22463263-22463394(+) (11)	NA	Q9SZD4	26S proteasome regulatory subunit 4 homolog A	AT4G29040.1	regulatory particle AAA-ATPase 2A 	LOC_Os03g18690.1	"26S protease regulatory subunit 4, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.5936.2.A1_a_at	A	A1TS	POPTR_0003s19560	POPTR_0003s19560 (11)	scaffold_3:18256382-18256548(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g16620.5	expressed protein	Medtr3g006210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.594.2.A1_a_at	A	A1TS	POPTR_0017s08150	POPTR_0017s08150 (11)	scaffold_17:6599055-6599160(+) (11)	NA	Q99460	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.594.2.A1_at	A	A1TS	POPTR_0017s08150	POPTR_0017s08150 (11)	scaffold_17:6598587-6599130(+) (11)	NA	Q99460	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5942.1.S1_x_at	A	A1TS	POPTR_0006s13980	POPTR_0006s13980 (11)	scaffold_6:11219293-11220592(+) (11)	NA	Q6QPJ6	"Peroxiredoxin Q, chloroplastic"	AT3G26060.1	Thioredoxin superfamily protein 	LOC_Os06g09610.2	"peroxiredoxin, putative, expressed"	Medtr8g133010.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.5943.1.S1_at	A	A1TS	POPTR_0001s10190	POPTR_0001s10190 (10)	scaffold_1:7906254-7906818(+) (10)	NA	Q08CY1	Kelch-like protein 22	AT3G61600.1	POZ/BTB containin G-protein 1 	LOC_Os02g16000.1	"E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
Ptp.5945.1.S1_s_at	A	A1TS	POPTR_0002s05180	POPTR_0002s05180 (9)	scaffold_2:3355155-3355559(-) (9)	NA	NA	NA	AT4G02715.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g084110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5948.1.S1_at	A	A1TS	POPTR_0012s11410	POPTR_0012s11410 (11)	scaffold_12:11856420-11858135(-) (11)	NA	B0JQV0	Putative pterin-4-alpha-carbinolamine dehydratase	AT5G51110.1	Transcriptional coactivator/pterin dehydratase 	LOC_Os01g47420.1	"pterin-4-alpha-carbinolamine dehydratase, putative, expressed"	Medtr5g019890.1	Transcriptional coactivator/pterin dehydratase 	GO:0006729|tetrahydrobiopterin biosynthetic process	GO:0008124|4-alpha-hydroxytetrahydrobiopterin dehydratase activity	NA
Ptp.5950.1.S1_at	A	A1TS	POPTR_0014s06830	POPTR_0014s06830 (11)	scaffold_14:5144185-5144226(-) (11)	NA	NA	NA	AT2G45520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 260 Blast hits to 238 proteins in 75 species: Archae - 0; Bacteria - 6; Metazoa - 94; Fungi - 40; Plants - 38; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). 	LOC_Os06g03920.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5950.1.S1_s_at	A	A1TS	POPTR_0014s06830	POPTR_0014s06830 (11)	scaffold_14:5144162-5144380(-) (11)	NA	NA	NA	AT2G45520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 260 Blast hits to 238 proteins in 75 species: Archae - 0; Bacteria - 6; Metazoa - 94; Fungi - 40; Plants - 38; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). 	LOC_Os06g03920.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5955.1.S1_at	A	A1TS	POPTR_0017s04740	POPTR_0017s04740 (10)	scaffold_17:3644149-3645140(+) (10)	NA	Q80Y75	DnaJ homolog subfamily B member 13	AT2G20560.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	Medtr4g108870.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.5956.3.S1_at	A	A1TS	POPTR_0010s20810	POPTR_0010s20810 (9)	scaffold_10:18261361-18261396(+) (9)	NA	Q7X9A0	"Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic"	AT2G39730.1	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.5958.1.S1_s_at	A	A1TS	POPTR_0005s13860	POPTR_0005s13860 (11)	scaffold_5:10851292-10851490(-) (11)	NA	Q40459	"Oxygen-evolving enhancer protein 1, chloroplastic"	AT5G66570.1	PS II oxygen-evolving complex 1 	LOC_Os01g31690.1	"oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed"	AC157372_6.1	Photosystem II manganese-stabilizing protein PsbO AC157372.2 27120-29314 F EGN_Mt090430 200	GO:0042549|photosystem II stabilization	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.5959.1.A1_at	A	A1TS	POPTR_0005s13860	POPTR_0005s13860 (11)	scaffold_5:10850696-10850735(-) (11)	NA	Q40459	"Oxygen-evolving enhancer protein 1, chloroplastic"	AT5G66570.1	PS II oxygen-evolving complex 1 	LOC_Os01g31690.1	"oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed"	AC157372_6.1	Photosystem II manganese-stabilizing protein PsbO AC157372.2 27120-29314 F EGN_Mt090430 200	GO:0042549|photosystem II stabilization	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.5961.1.S1_a_at	A	A1TS	POPTR_0001s31490	POPTR_0001s31490 (11)	scaffold_1:29798526-29798627(+) (11)	NA	Q4PE39	Protein transport protein SEC23	AT1G05520.1	Sec23/Sec24 protein transport family protein 	LOC_Os11g24560.1	"protein transport protein, putative, expressed"	Medtr3g104400.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
Ptp.5961.1.S1_at	A	A1TS	POPTR_0001s31490	POPTR_0001s31490 (11)	scaffold_1:29798336-29798488(+) (11)	NA	Q4PE39	Protein transport protein SEC23	AT1G05520.1	Sec23/Sec24 protein transport family protein 	LOC_Os11g24560.1	"protein transport protein, putative, expressed"	Medtr3g104400.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
Ptp.5962.1.S1_at	A	A1TS	POPTR_0008s01920	POPTR_0008s01920 (11)	scaffold_8:915949-918177(+) (11)	POPTR_0010s24890 (6)	Q4QQV8	Charged multivesicular body protein 5	AT3G10640.1	SNF7 family protein 	LOC_Os05g01250.1	"SNF7 domain containing protein, putative, expressed"	Medtr1g112210.1	Snf7 	GO:0015031|protein transport	NA	NA
Ptp.5963.1.S1_at	A	A1TS	POPTR_0010s22490	POPTR_0010s22490 (10)	scaffold_10:19395129-19395164(-) (10)	NA	Q4V9P0	S-adenosylmethionine mitochondrial carrier protein	AT2G35800.1	mitochondrial substrate carrier family protein 	LOC_Os11g01270.1	"mitochondrial substrate carrier family protein, putative, expressed"	Medtr1g122080.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5963.1.S1_s_at	A	A1TS	POPTR_0010s22490	POPTR_0010s22490 (11)	scaffold_10:19395082-19396067(-) (11)	NA	Q4V9P0	S-adenosylmethionine mitochondrial carrier protein	AT2G35800.1	mitochondrial substrate carrier family protein 	LOC_Os11g01270.1	"mitochondrial substrate carrier family protein, putative, expressed"	Medtr1g122080.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5965.1.S1_at	A	A2TS	POPTR_0001s23450	POPTR_0001s23450 (11)//POPTR_0001s23460 (11)	scaffold_1:22809803-22810172(-) (11)//scaffold_1:22867309-22867678(-) (11)	NA	A2SY66	Vicianin hydrolase (Fragment)	AT2G44480.1	beta glucosidase 17 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr4g024200.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.5965.1.S1_s_at	A	A2TS	POPTR_0001s23440	POPTR_0001s23440 (11)//POPTR_0001s23460 (11)	scaffold_1:22804396-22804780(-) (11)//scaffold_1:22866878-22867262(-) (11)	NA	A2SY66	Vicianin hydrolase (Fragment)	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39880.1	"Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed"	Medtr3g031570.1	"Glycoside hydrolase, family 1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5966.1.S1_at	A	A1TS	POPTR_0018s07160	POPTR_0018s07160 (11)	scaffold_18:7339230-7339659(-) (11)	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
Ptp.5966.1.S1_s_at	A	A1TS	POPTR_0018s07160	POPTR_0018s07160 (11)	scaffold_18:7339282-7339531(-) (11)	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
Ptp.5968.1.A1_at	A	A1TS	POPTR_0013s04950	POPTR_0013s04950 (10)	scaffold_13:3470551-3471113(+) (10)	NA	NA	NA	AT1G08530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g24240.1	expressed protein	Medtr4g107840.1	"T27G7.21, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.597.1.A1_s_at	A	A1TS	POPTR_0007s08590	POPTR_0007s08590 (11)	scaffold_7:7440694-7440953(-) (11)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.5970.1.S1_at	A	A1TS	POPTR_0013s14910	POPTR_0013s14910 (11)	scaffold_13:14994690-14995038(+) (11)	NA	O54922	Exocyst complex component 7	AT5G58430.1	exocyst subunit exo70 family protein B1 	LOC_Os05g39610.1	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr5g081630.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
Ptp.5972.1.S1_s_at	A	A1TS	POPTR_0001s15140	POPTR_0001s15140 (11)	scaffold_1:11980278-11981954(-) (11)	NA	NA	NA	AT4G17600.1	Chlorophyll A-B binding family protein 	LOC_Os02g03330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5973.1.S1_s_at	A	A1TS	POPTR_0004s04720	POPTR_0004s04720 (11)	scaffold_4:3468458-3468966(-) (11)	NA	Q9LW49	Ethylene-responsive transcription factor 4	AT5G44210.1	erf domain protein 9 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr2g017860.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.5974.1.S1_s_at	A	A1TS	POPTR_0005s26610	POPTR_0005s26610 (11)	scaffold_5:24554343-24555895(+) (11)	NA	Q0JIL1	Probable nucleoredoxin 2	AT1G60420.1	DC1 domain-containing protein 	LOC_Os01g58194.1	"protein disulfide isomerase, putative, expressed"	Medtr3g157120.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5975.2.S1_at	A	A1MS	POPTR_0016s00310	POPTR_0016s00310 (11)	scaffold_16:48306-48841(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5979.1.S1_s_at	A	A1TS	POPTR_0001s12230	POPTR_0001s12230 (11)	scaffold_1:9473685-9474881(-) (11)	NA	Q9SCY2	"FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplastic"	AT5G45680.1	FK506-binding protein 13 	LOC_Os06g45340.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g140460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.598.1.A1_a_at	A	A1TS	POPTR_0015s00980	POPTR_0015s00980 (11)	scaffold_15:576143-576393(+) (11)	NA	P09379	GTPase-activating protein GYP7	AT3G49350.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.5980.3.A1_a_at	A	A1TS	POPTR_0006s19310	POPTR_0006s19310 (11)	scaffold_6:18336736-18337087(+) (11)	NA	Q9ZP41	EG45-like domain containing protein	AT2G18660.1	plant natriuretic peptide A 	LOC_Os09g29690.1	"beta-expansin precursor, putative, expressed"	Medtr6g084060.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5981.1.S1_a_at	A	A1TS	POPTR_0014s06210	POPTR_0014s06210 (11)	scaffold_14:4728290-4728427(-) (11)	NA	O22152	Axial regulator YABBY 1	AT2G45190.1	Plant-specific transcription factor YABBY family protein 	LOC_Os04g45330.1	"YABBY domain containing protein, putative, expressed"	Medtr8g106280.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5982.1.S1_at	A	A1TS	POPTR_0018s01310	POPTR_0018s01310 (11)	scaffold_18:1267914-1268075(-) (11)	NA	Q9C944	Probable histone H2A variant 3	AT1G52740.1	histone H2A protein 9 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g013390.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.5984.1.S1_s_at	A	A1TS	POPTR_0006s24900	POPTR_0006s24900 (11)	scaffold_6:23414782-23415173(+) (11)	NA	P49043	Vacuolar-processing enzyme	AT4G32940.1	gamma vacuolar processing enzyme 	LOC_Os01g37910.3	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr3g140280.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
Ptp.5985.1.S1_at	A	A1TS	POPTR_0010s12630	POPTR_0010s12630 (11)	scaffold_10:12610164-12610537(-) (11)	NA	NA	NA	AT3G03280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g47960.1	expressed protein	Medtr1g137740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5986.1.S1_s_at	A	A1TS	POPTR_0006s11010	POPTR_0006s11010 (11)	scaffold_6:8358163-8358676(+) (11)	NA	Q39030	Serine/threonine-protein kinase AtPK2/AtPK19	AT3G08720.2	serine/threonine protein kinase 2 	LOC_Os03g21620.1	"AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.5987.1.A1_at	A	A1TS	POPTR_0007s13110	POPTR_0007s13110 (11)	scaffold_7:13272460-13273800(+) (11)	NA	Q43187	Soluble inorganic pyrophosphatase	AT1G01050.1	pyrophosphorylase 1 	LOC_Os05g02310.1	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr5g020750.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.5988.1.S1_at	A	A1TS	POPTR_0014s11580	POPTR_0014s11580 (10)	scaffold_14:8583793-8584015(+) (10)	NA	A6Q0K5	Calvin cycle protein CP12	AT3G62410.1	CP12 domain-containing protein 2 	LOC_Os03g19380.1	"calvin cycle protein CP12, putative, expressed"	Medtr1g106710.1	Protein of unknown function CP12 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5989.1.S1_s_at	A	A1TS	POPTR_0010s06670	POPTR_0010s06670 (11)	scaffold_10:7965648-7967286(+) (11)	NA	O32107	Uncharacterized membrane protein yuiD	AT1G67600.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os01g67560.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.599.1.S1_at	A	A1TS	POPTR_0005s25760	POPTR_0005s25760 (9)	scaffold_5:23962861-23962926(+) (9)	NA	Q56XU4	Zinc finger CCCH domain-containing protein 6	AT1G19860.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os04g56750.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr1g024110.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.5990.1.S1_at	A	A1TS	POPTR_0006s05810	POPTR_0006s05810 (11)	scaffold_6:4104270-4104711(-) (11)	NA	NA	NA	AT2G42220.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os09g10750.1	"rhodanese-like, putative, expressed"	Medtr7g111490.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5992.1.S1_at	A	A1TS	POPTR_0001s38810	POPTR_0001s38810 (11)	scaffold_1:38085846-38086337(-) (11)	NA	Q9Y5Z4	Heme-binding protein 2	AT1G17100.1	SOUL heme-binding family protein 	LOC_Os01g11230.1	"SOUL heme-binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5993.1.S1_a_at	A	A1TS	POPTR_0015s11040	POPTR_0015s11040 (9)	scaffold_15:11731627-11733041(+) (9)	NA	O82743	Agamous-like MADS-box protein AGL19	AT4G22950.1	AGAMOUS-like 19 	LOC_Os04g49150.1	"OsMADS17 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.5995.1.S1_at	A	A1TS	POPTR_0006s24050	POPTR_0006s24050 (9)	scaffold_6:22743563-22744061(+) (9)	NA	Q8VWQ5	Probable WRKY transcription factor 50	AT5G26170.1	WRKY DNA-binding protein 50 	LOC_Os05g46020.1	"OsWRKY7 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g019360.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.5996.1.S1_at	A	A1TS	POPTR_0007s04490	POPTR_0007s04490 (10)	scaffold_7:2771451-2771507(-) (10)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT5G63940.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os12g07990.1	"protein kinase family protein, putative"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5996.2.S1_s_at	A	A1TS	POPTR_0010s06820	POPTR_0010s06820 (11)	scaffold_10:8091861-8092117(+) (11)	NA	Q9LIP2	Proteasome subunit beta type-5-B	AT3G26340.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os06g06030.1	"peptidase, T1 family, putative, expressed"	Medtr3g117480.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.5998.1.S1_at	A	A1TS	POPTR_0016s10680	POPTR_0016s10680 (11)	scaffold_16:8973706-8974201(+) (11)	NA	NA	NA	AT2G36895.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 32 Blast hits to 32 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g05800.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.60.1.S1_at	A	A1TS	POPTR_0012s14380	POPTR_0012s14380 (11)	scaffold_12:14291183-14292120(-) (11)	NA	Q54NB6	FK506-binding protein 4	AT4G25340.1	FK506 BINDING PROTEIN 53 	LOC_Os04g36890.2	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g008740.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.600.1.S1_at	A	A1TS	POPTR_0001s10980	POPTR_0001s10980 (11)	scaffold_1:8512753-8512873(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01960.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6000.1.S1_at	A	A1TS	POPTR_0010s11910	POPTR_0010s11910 (11)	scaffold_10:12037596-12038639(-) (11)	NA	Q9LQU4	Uncharacterized protein At1g14870	AT1G14870.1	PLANT CADMIUM RESISTANCE 2 	LOC_Os02g36940.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr5g017670.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6002.1.S1_s_at	A	A1TS	POPTR_0003s09160	POPTR_0003s09160 (11)	scaffold_3:10499162-10499204(+) (11)	NA	NA	NA	AT4G17900.1	PLATZ transcription factor family protein 	LOC_Os04g50120.1	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6005.1.S1_at	A	A1TS	POPTR_0005s18460	POPTR_0005s18460 (11)	scaffold_5:16673047-16674225(-) (11)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6007.1.S1_at	A	A1TS	POPTR_0002s05060	POPTR_0002s05060 (10)	scaffold_2:3280179-3280537(+) (10)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr5g006700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6008.1.S1_s_at	A	A1TS	POPTR_0006s29020	POPTR_0006s29020 (11)	scaffold_6:26517569-26518179(+) (11)	NA	O59811	Zinc finger protein C550.15c	AT4G31420.1	Zinc finger protein 622 	LOC_Os06g47840.1	"ZOS6-08 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6009.1.S1_at	A	A1TS	POPTR_0012s14730	POPTR_0012s14730 (11)	scaffold_12:14513171-14516612(+) (11)	NA	Q9LTV6	"Peroxisomal 2,4-dienoyl-CoA reductase"	AT3G12800.1	short-chain dehydrogenase-reductase B 	LOC_Os04g52400.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr7g139420.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.6011.1.S1_at	A	A1TS	POPTR_0010s11780	POPTR_0010s11780 (11)	scaffold_10:11945551-11945808(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G03400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g14400.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	AC233676_15.1	2OG-Fe(II) oxygenase AC233676.2 68774-66756 F EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6012.1.S1_s_at	A	A1TS	POPTR_0002s12430	POPTR_0002s12430 (11)	scaffold_2:9221255-9221476(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6012.2.S1_at	A	A1TA	POPTR_0001s38070	POPTR_0001s38070 (11)	scaffold_1:37105470-37105588(-) (11)	NA	NA	NA	AT4G21740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g136820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6013.1.A1_s_at	A	A1TS	POPTR_0019s03660	POPTR_0019s03660 (11)	scaffold_19:3742464-3742902(+) (11)	NA	Q86YJ7	Ankyrin repeat domain-containing protein 13B	AT3G04470.1	Ankyrin repeat family protein 	LOC_Os02g56530.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6014.1.S1_at	A	A1TS	POPTR_0014s13480	POPTR_0014s13480 (11)	scaffold_14:9926414-9927005(+) (11)	NA	NA	NA	AT2G48160.1	Tudor/PWWP/MBT domain-containing protein 	LOC_Os03g24339.1	"PWWP domain containing protein, expressed"	Medtr1g086720.1	PWWP; Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6016.1.S1_at	A	A1TS	POPTR_0014s02410	POPTR_0014s02410 (11)	scaffold_14:2008734-2008894(-) (11)	NA	P43297	Cysteine proteinase RD21a	AT5G43060.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6016.1.S1_s_at	A	A1TS	POPTR_0014s02410	POPTR_0014s02410 (11)	scaffold_14:2008378-2009066(-) (11)	NA	P43297	Cysteine proteinase RD21a	AT5G43060.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6017.1.S1_a_at	A	A1TS	POPTR_0001s21140	POPTR_0001s21140 (11)	scaffold_1:19487037-19487216(-) (11)	NA	NA	NA	AT3G15840.5	post-illumination chlorophyll fluorescence increase 	LOC_Os03g38950.1	"chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed"	Medtr4g005610.1	"PIFI, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6017.3.S1_at	A	A1MS	POPTR_0001s21140	POPTR_0001s21140 (10)	scaffold_1:19486724-19486977(-) (10)	NA	NA	NA	AT3G15840.5	post-illumination chlorophyll fluorescence increase 	LOC_Os03g38950.1	"chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed"	Medtr4g005610.1	"PIFI, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6019.2.S1_s_at	A	A2TS	POPTR_0002s21290	POPTR_0002s21290 (11)//POPTR_0014s15210 (11)	scaffold_14:11309914-11310011(+) (11)//scaffold_2:17691945-17692042(+) (11)	NA	Q6Z1D5	Autophagy-related protein 8C	AT2G05630.1	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6019.2.S1_x_at	A	A1TS	POPTR_0002s21290	POPTR_0002s21290 (11)	scaffold_2:17690843-17692404(+) (11)	NA	Q6Z1D5	Autophagy-related protein 8C	AT2G05630.1	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6021.1.S1_at	A	A1TS	POPTR_0010s02990	POPTR_0010s02990 (11)	scaffold_10:3501825-3502514(-) (11)	NA	Q94A20	BI1-like protein	AT4G15470.1	Bax inhibitor-1 family protein 	LOC_Os05g33360.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr2g026190.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6022.1.S1_s_at	A	A1TS	POPTR_0004s18000	POPTR_0004s18000 (11)	scaffold_4:18018090-18019087(+) (11)	NA	O24030	Proteasome subunit alpha type-7	AT5G66140.1	proteasome alpha subunit D2 	LOC_Os08g43540.1	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.6023.1.S1_at	A	A1TS	POPTR_0003s11030	POPTR_0003s11030 (11)	scaffold_3:11885369-11885826(+) (11)	NA	Q8VYK7	Autophagy-related protein 8f	AT4G16520.2	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6024.1.S1_at	A	A1TS	POPTR_0006s26570	POPTR_0006s26570 (11)	scaffold_6:24746919-24749235(+) (11)	NA	Q0DWQ7	Cyclin-B1-2	AT1G67250.1	Proteasome maturation factor UMP1 	LOC_Os02g55640.1	"proteasome maturation factor UMP1 family protein, expressed"	Medtr5g008120.1	Proteasome maturation factor UMP1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6025.1.S1_at	A	A1TS	POPTR_0011s00740	POPTR_0011s00740 (11)	scaffold_11:372934-373696(-) (11)	NA	O95563	Brain protein 44	AT4G22310.1	Uncharacterised protein family (UPF0041) 	LOC_Os07g26700.1	"UPF0041 domain containing protein, putative, expressed"	Medtr2g029550.1	Protein of unknown function UPF0041 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6025.1.S1_s_at	A	A1TS	POPTR_0011s00740	POPTR_0011s00740 (11)	scaffold_11:371002-372930(-) (11)	NA	O95563	Brain protein 44	AT4G22310.1	Uncharacterised protein family (UPF0041) 	LOC_Os07g26700.1	"UPF0041 domain containing protein, putative, expressed"	Medtr2g029550.1	Protein of unknown function UPF0041 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6026.1.S1_at	A	A1TS	POPTR_0012s07350	POPTR_0012s07350 (11)	scaffold_12:8233749-8234302(-) (11)	NA	Q9LV11	"ATPase 11, plasma membrane-type"	AT5G62670.1	H(+)-ATPase 11 	LOC_Os12g44150.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.6027.1.S1_at	A	A2TS	POPTR_0022s00900	POPTR_0590s00200 (11)//POPTR_0022s00900 (11)	scaffold_22:491354-491658(+) (11)//scaffold_590:184-488(+) (11)	NA	Q2V3L3	Uncharacterized zinc finger protein At4g06634	AT4G06634.1	zinc finger (C2H2 type) family protein 	LOC_Os02g34680.1	"ZOS2-09 - C2H2 zinc finger protein, expressed"	Medtr2g006510.1	"Basic-leucine zipper (bZIP) transcription factor; Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6027.1.S1_s_at	A	A3TS	POPTR_0022s00900	POPTR_0590s00200 (11)//POPTR_0022s00900 (11)//POPTR_0004s23050 (9)	scaffold_22:491192-491435(+) (11)//scaffold_4:21852187-21852400(-) (9)//scaffold_590:22-265(+) (11)	NA	Q2V3L3	Uncharacterized zinc finger protein At4g06634	AT4G06634.1	zinc finger (C2H2 type) family protein 	LOC_Os02g34680.1	"ZOS2-09 - C2H2 zinc finger protein, expressed"	Medtr2g006510.1	"Basic-leucine zipper (bZIP) transcription factor; Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6027.2.S1_a_at	A	A1TS	POPTR_0022s00900	POPTR_0022s00900 (11)	scaffold_22:486424-487256(+) (11)	NA	Q2V3L3	Uncharacterized zinc finger protein At4g06634	AT4G06634.1	zinc finger (C2H2 type) family protein 	LOC_Os02g34680.1	"ZOS2-09 - C2H2 zinc finger protein, expressed"	Medtr2g006510.1	"Basic-leucine zipper (bZIP) transcription factor; Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6029.1.S1_at	A	A1TS	POPTR_0002s19670	POPTR_0002s19670 (11)	scaffold_2:15616608-15616988(+) (11)	NA	Q9ZSM8	Histone-lysine N-methyltransferase EZA1	AT4G02020.1	SET domain-containing protein 	LOC_Os03g19480.1	"SET domain containing protein, expressed"	Medtr1g106640.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.603.1.A1_at	A	A1TS	POPTR_0001s29370	POPTR_0001s29370 (11)	scaffold_1:28071669-28071955(-) (11)	NA	Q9LXC9	"Soluble inorganic pyrophosphatase 1, chloroplastic"	AT5G09650.1	pyrophosphorylase 6 	LOC_Os02g52940.2	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr2g010460.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.603.2.A1_at	A	A1MS	POPTR_0001s29370	POPTR_0001s29370 (11)	scaffold_1:28072403-28072523(-) (11)	NA	Q9LXC9	"Soluble inorganic pyrophosphatase 1, chloroplastic"	AT5G09650.1	pyrophosphorylase 6 	LOC_Os02g52940.2	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr2g010460.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.6030.1.S1_at	A	A1TS	POPTR_0011s14350	POPTR_0011s14350 (10)	scaffold_11:16795460-16795876(-) (10)	NA	Q9SHI1	"Translation initiation factor IF-2, chloroplastic"	AT1G17220.1	"Translation initiation factor 2, small GTP-binding protein "	LOC_Os05g49970.2	"translation initiation factor IF-2, chloroplast precursor, putative, expressed"	Medtr2g077230.1	"Elongation factor Tu, domain 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0003743|translation initiation factor activity	NA
Ptp.6031.1.S1_s_at	A	A1TS	POPTR_0008s00350	POPTR_0008s00350 (11)	scaffold_8:120721-121029(+) (11)	NA	P34899	"Serine hydroxymethyltransferase, mitochondrial"	AT4G37930.1	serine transhydroxymethyltransferase 1 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.6032.1.S1_at	A	A1TS	POPTR_0008s09710	POPTR_0008s09710 (11)	scaffold_8:5996015-5997190(-) (11)	NA	Q9QZH3	Peptidyl-prolyl cis-trans isomerase E	AT1G13690.1	ATPase E1 	LOC_Os03g40310.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g047590.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6034.1.S1_s_at	A	A1TS	POPTR_0018s09210	POPTR_0018s09210 (10)	scaffold_18:10085385-10085894(-) (10)	NA	Q53HY2	Ninja-family protein mc410	AT4G28910.3	novel interactor of JAZ 	LOC_Os05g48500.3	expressed protein	Medtr6g098770.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6038.1.S1_at	A	A1TS	POPTR_0017s08260	POPTR_0017s08260 (11)	scaffold_17:6732844-6733035(-) (11)	NA	NA	NA	AT3G24100.1	Uncharacterised protein family SERF 	LOC_Os05g33700.1	4F5 protein family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6039.1.S1_at	A	A1TS	POPTR_0014s08240	POPTR_0014s08240 (11)	scaffold_14:6119703-6121536(-) (11)	NA	P42749	Ubiquitin-conjugating enzyme E2 5	AT1G63800.1	ubiquitin-conjugating enzyme 5 	LOC_Os10g31000.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g125340.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.604.1.S1_at	A	A1TS	POPTR_0015s07490	POPTR_0015s07490 (11)	scaffold_15:8758481-8759412(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT1G74690.1	IQ-domain 31 	LOC_Os05g45930.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g112590.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6043.2.S1_a_at	A	A1TS	POPTR_0005s10850	POPTR_0005s10850 (11)	scaffold_5:7805109-7806937(-) (11)	NA	P27626	Senescence-associated protein DIN1	AT4G35770.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os06g50930.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr5g023140.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6046.1.A1_at	A	A1TS	POPTR_0010s11780	POPTR_0010s11780 (11)	scaffold_10:11943799-11944487(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G03400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g14400.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	AC233676_15.1	2OG-Fe(II) oxygenase AC233676.2 68774-66756 F EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6048.1.S1_at	A	A2TS	POPTR_0015s06370	POPTR_0015s06410 (11)//POPTR_0015s06370 (11)	scaffold_15:7049297-7050682(-) (11)//scaffold_15:7100052-7101447(-) (11)	NA	NA	NA	AT1G73885.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g50270.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6052.1.S1_s_at	A	A1TS	POPTR_0008s20130	POPTR_0008s20130 (11)	scaffold_8:13930648-13930688(+) (11)	NA	Q6DBV4	Probable phosphatase phospho1	AT1G17710.1	Pyridoxal phosphate phosphatase-related protein 	LOC_Os01g52230.1	"phosphoethanolamine/phosphocholine phosphatase, putative, expressed"	AC235757_53.1	"HAD-superfamily subfamily IB hydrolase, hypothetical 1 AC235757.1 226999-229678 E EGN_Mt090430 200"	NA	GO:0016791|phosphatase activity	NA
Ptp.6053.1.S1_at	A	A1TS	POPTR_0012s01850	POPTR_0012s01850 (11)	scaffold_12:1386058-1386147(+) (11)	NA	NA	NA	AT5G24165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6053.1.S1_s_at	A	A1TS	POPTR_0012s01850	POPTR_0012s01850 (11)	scaffold_12:1383876-1386036(+) (11)	NA	NA	NA	AT5G24165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6055.1.S1_at	A	A1TS	POPTR_0007s11070	POPTR_0007s11070 (10)	scaffold_7:11314874-11323973(+) (10)	POPTR_0007s11040 (7)	Q9MTQ6	Red chlorophyll catabolite reductase (Fragment)	AT4G37000.1	accelerated cell death 2 (ACD2) 	LOC_Os10g25030.1	"red chlorophyll catabolite reductase, putative, expressed"	Medtr5g103790.2	Red chlorophyll catabolite reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6056.1.S1_at	A	A1TS	POPTR_0001s40120	POPTR_0001s40120 (9)	scaffold_1:39432448-39433925(+) (9)	NA	Q9H2M9	Rab3 GTPase-activating protein non-catalytic subunit	AT3G14910.1	unknown protein; Has 158 Blast hits to 158 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os09g14680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6057.1.S1_at	A	A1TS	POPTR_0001s08410	POPTR_0001s08410 (11)	scaffold_1:6418063-6418155(-) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT4G22880.2	leucoanthocyanidin dioxygenase 	LOC_Os01g27490.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr5g011370.1	ArgE/dapE/ACY1/CPG2/yscS; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6057.1.S1_s_at	A	A1TS	POPTR_0001s08410	POPTR_0001s08410 (11)	scaffold_1:6417746-6418318(-) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT4G22880.2	leucoanthocyanidin dioxygenase 	LOC_Os01g27490.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr5g011370.1	ArgE/dapE/ACY1/CPG2/yscS; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.606.1.A1_at	A	A1TS	POPTR_0014s12490	POPTR_0014s12490 (11)	scaffold_14:9194757-9195165(-) (11)	NA	NA	NA	AT1G02870.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os05g30420.1	expressed protein	Medtr1g108530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6060.1.S1_at	A	A1TS	POPTR_0014s13560	POPTR_0014s13560 (11)	scaffold_14:9973659-9974452(+) (11)	NA	O80860	"ATP-dependent zinc metalloprotease FTSH 2, chloroplastic"	AT2G30950.1	FtsH extracellular protease family 	LOC_Os06g45820.1	"OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.6061.1.S1_at	A	A1TS	POPTR_0007s02690	POPTR_0007s02690 (9)	scaffold_7:1569768-1569881(-) (9)	NA	NA	NA	AT4G15248.1	B-box type zinc finger family protein 	LOC_Os08g08120.3	"B-box zinc finger family protein, putative, expressed"	Medtr2g103560.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6063.1.S1_at	A	A1TS	POPTR_0016s06030	POPTR_0016s06030 (11)	scaffold_16:3962579-3962845(+) (11)	NA	Q5I0H4	Transmembrane and coiled-coil domains protein 1	AT5G06660.1	"Protein of unknown function DUF106, transmembrane "	LOC_Os03g51160.2	"fb27, putative, expressed"	Medtr7g099900.1	"Transmembrane and coiled-coil domain-containing protein 1 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6067.1.S1_at	A	A1TS	POPTR_0034s00330	POPTR_0034s00330 (11)	scaffold_34:216029-216172(-) (11)	NA	O23429	Vesicle-associated membrane protein 724	AT4G15780.1	vesicle-associated membrane protein 724 	LOC_Os07g09600.1	"vesicle-associated membrane protein, putative, expressed"	Medtr4g023810.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.6067.1.S1_s_at	A	A1TS	POPTR_0034s00330	POPTR_0034s00330 (11)	scaffold_34:215879-216403(-) (11)	NA	O23429	Vesicle-associated membrane protein 724	AT4G15780.1	vesicle-associated membrane protein 724 	LOC_Os07g09600.1	"vesicle-associated membrane protein, putative, expressed"	Medtr4g023810.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.6068.1.S1_s_at	A	A1TS	POPTR_0022s00280	POPTR_0022s00280 (11)	scaffold_22:41652-41850(-) (11)	NA	Q5M868	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
Ptp.6069.1.S1_a_at	A	A1TS	POPTR_0014s09120	POPTR_0014s09120 (11)	scaffold_14:6758408-6758555(+) (11)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6069.2.S1_a_at	A	A1TS	POPTR_0014s09120	POPTR_0014s09120 (11)	scaffold_14:6758407-6758579(+) (11)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6073.1.S1_at	A	A1TS	POPTR_0004s18090	POPTR_0004s18090 (11)	scaffold_4:18102923-18103696(+) (11)	NA	P35133	Ubiquitin-conjugating enzyme E2 10	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os02g02830.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g098530.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6074.1.S1_at	A	A1TS	POPTR_0005s11940	POPTR_0005s11940 (11)	scaffold_5:8714800-8714996(+) (11)	NA	NA	NA	AT3G51100.1	unknown protein; Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g49980.1	expressed protein	Medtr4g033520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6074.1.S1_s_at	A	A1TS	POPTR_0005s11940	POPTR_0005s11940 (11)	scaffold_5:8715059-8715234(+) (11)	NA	NA	NA	AT3G51100.1	unknown protein; Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g49980.1	expressed protein	Medtr4g033520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6075.1.S1_at	A	A3TS	POPTR_0017s07890	POPTR_0017s07890 (11)//POPTR_0017s07910 (10)//POPTR_0017s07930 (9)	scaffold_17:6239010-6239441(+) (11)//scaffold_17:6271419-6271849(+) (10)//scaffold_17:6303479-6303909(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6076.1.S1_s_at	A	A1TS	POPTR_0001s23190	POPTR_0001s23190 (11)	scaffold_1:22451919-22452046(-) (11)	NA	Q84WM9	Elongation factor 1-beta 1	AT5G12110.1	"Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6 "	LOC_Os07g46750.1	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.6077.1.S1_s_at	A	A1TS	POPTR_0010s20560	POPTR_0010s20560 (9)	scaffold_10:18094315-18094715(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.608.1.S1_at	A	A1TS	POPTR_0006s08570	POPTR_0006s08570 (9)	scaffold_6:6250090-6250525(+) (9)	NA	Q9S7G7	Myb-related protein 3R-1	AT5G02320.2	myb domain protein 3r-5 	LOC_Os01g62410.1	"MYB family transcription factor, putative, expressed"	Medtr7g068380.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6080.1.S1_at	A	A1TS	POPTR_0001s27630	POPTR_0001s27630 (11)	scaffold_1:26508190-26509348(-) (11)	NA	Q54HF6	Probable U6 snRNA-associated Sm-like protein LSm7	AT2G03870.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g08040.1	"LSM domain containing protein, expressed"	Medtr7g070870.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6081.1.S1_at	A	A1TS	POPTR_0008s11770	POPTR_0008s11770 (11)	scaffold_8:7532322-7533160(-) (11)	NA	P54243	"Glucose-6-phosphate isomerase, cytosolic"	AT5G42740.1	Sugar isomerase (SIS) family protein 	LOC_Os03g56460.2	"glucose-6-phosphate isomerase, putative, expressed"	Medtr6g009990.1	Phosphoglucose isomerase (PGI) 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006096|glycolysis||GO:0006094|gluconeogenesis	GO:0004347|glucose-6-phosphate isomerase activity	NA
Ptp.6084.2.S1_s_at	A	A1TS	POPTR_0005s25540	POPTR_0005s25540 (10)	scaffold_5:23774284-23774882(+) (10)	NA	P25804	Cysteine proteinase 15A	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6084.3.S1_a_at	A	A1TS	POPTR_0005s25540	POPTR_0005s25540 (11)	scaffold_5:23773535-23773587(+) (11)	NA	P25804	Cysteine proteinase 15A	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6084.3.S1_at	A	A1MS	POPTR_0005s25540	POPTR_0005s25540 (11)	scaffold_5:23773955-23774021(+) (11)	NA	P25804	Cysteine proteinase 15A	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6085.1.S1_s_at	A	A1TS	POPTR_0005s02060	POPTR_0005s02060 (11)	scaffold_5:1336137-1336500(+) (11)	NA	Q6GHH1	DNA polymerase III polC-type	AT5G26940.4	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os03g18940.1	"exonuclease, putative, expressed"	Medtr7g138210.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6089.1.A1_s_at	A	A1TS	POPTR_0016s02790	POPTR_0016s02790 (10)	scaffold_16:1385023-1385056(+) (10)	NA	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.609.1.S1_at	A	A1TS	POPTR_0005s08690	POPTR_0005s08690 (10)	scaffold_5:6050372-6050428(-) (10)	NA	Q9D7M8	DNA-directed RNA polymerase II subunit RPB4	AT5G09920.1	"RNA polymerase II, Rpb4, core protein "	LOC_Os02g02510.1	"DNA-directed RNA polymerase II subunit RPB4, putative, expressed"	Medtr8g012340.1	RNA polymerase Rpb4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.609.1.S1_s_at	A	A1TS	POPTR_0005s08690	POPTR_0005s08690 (11)	scaffold_5:6050434-6051682(-) (11)	NA	Q9D7M8	DNA-directed RNA polymerase II subunit RPB4	AT5G09920.1	"RNA polymerase II, Rpb4, core protein "	LOC_Os02g02510.1	"DNA-directed RNA polymerase II subunit RPB4, putative, expressed"	Medtr8g012340.1	RNA polymerase Rpb4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.609.3.S1_at	A	A1MS	POPTR_0007s06660	POPTR_0007s06660 (11)	scaffold_7:5054372-5054586(-) (11)	NA	Q9D7M8	DNA-directed RNA polymerase II subunit RPB4	AT5G09920.1	"RNA polymerase II, Rpb4, core protein "	LOC_Os02g02510.1	"DNA-directed RNA polymerase II subunit RPB4, putative, expressed"	Medtr8g012340.1	RNA polymerase Rpb4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.6091.1.S1_at	A	A1TS	POPTR_0014s16530	POPTR_0014s16530 (11)	scaffold_14:12596621-12597331(+) (11)	NA	NA	NA	AT2G05310.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13500.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g39830.1	expressed protein	Medtr5g106160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6093.1.S1_at	A	A1TS	POPTR_0013s15110	POPTR_0013s15110 (11)	scaffold_13:15167308-15167375(+) (11)	NA	Q9LVL5	Probable serine/threonine-protein kinase WNK4	AT5G58350.1	with no lysine (K) kinase 4 	LOC_Os12g02250.1	"STE_PAK_Ste20_Slob_Wnk.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g083060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6095.1.S1_at	A	A1TS	POPTR_0006s08850	POPTR_0006s08850 (11)	scaffold_6:6509615-6510262(-) (11)	NA	NA	NA	AT5G02120.1	one helix protein 	LOC_Os05g22730.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6096.1.S1_s_at	A	A1TS	POPTR_0010s08470	POPTR_0010s08470 (10)	scaffold_10:9373357-9373571(+) (10)	NA	Q6NN02	"Uncharacterized protein At4g14450, chloroplastic"	AT4G14450.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6097.1.S1_x_at	A	A1TS	POPTR_0015s14380	POPTR_0015s14380 (11)	scaffold_15:14005334-14006258(+) (11)	NA	Q42971	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.6099.1.S1_at	A	A1TS	POPTR_0013s14450	POPTR_0013s14450 (11)	scaffold_13:14634485-14634583(+) (11)	NA	Q9SKT0	"Protein THYLAKOID FORMATION 1, chloroplastic"	AT2G20890.1	photosystem II reaction center PSB29 protein 	LOC_Os07g37250.1	"THYLAKOID FORMATION1, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6099.1.S1_s_at	A	A1TS	POPTR_0013s14450	POPTR_0013s14450 (11)	scaffold_13:14632875-14634423(+) (11)	NA	Q9SKT0	"Protein THYLAKOID FORMATION 1, chloroplastic"	AT2G20890.1	photosystem II reaction center PSB29 protein 	LOC_Os07g37250.1	"THYLAKOID FORMATION1, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.61.1.S1_at	A	A1TS	POPTR_0004s21900	POPTR_0004s21900 (10)	scaffold_4:20869113-20869609(+) (10)	NA	NA	NA	AT2G16050.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os12g40470.1	"DC1 domain-containing protein, putative, expressed"	Medtr7g026080.1	DC1; C1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6100.1.S1_s_at	A	A2TS	POPTR_0006s04020	POPTR_0006s04020 (11)//POPTR_0016s03840 (11)	scaffold_16:2144487-2145821(-) (11)//scaffold_6:2727188-2728665(-) (11)	NA	Q6CFJ0	Mitochondria fission 1 protein	AT3G57090.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g31770.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr5g097040.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6100.3.S1_a_at	A	A2TS	POPTR_0006s04020	POPTR_0006s04020 (9)//POPTR_0016s03840 (9)	scaffold_16:2144664-2144698(-) (9)//scaffold_6:2727375-2727409(-) (9)	NA	Q6CFJ0	Mitochondria fission 1 protein	AT3G57090.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g31770.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr5g097040.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6102.1.S1_s_at	A	A1TS	POPTR_0004s01470	POPTR_0004s01470 (11)	scaffold_4:837894-838222(-) (11)	NA	P29790	"ATP synthase gamma chain, chloroplastic"	AT4G04640.1	"ATPase, F1 complex, gamma subunit protein "	LOC_Os07g32880.1	"ATP synthase gamma chain, putative, expressed"	Medtr3g068860.1	"H+-transporting two-sector ATPase, gamma subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)"""
Ptp.6103.1.S1_s_at	A	A1TS	POPTR_0007s12650	POPTR_0007s12650 (9)	scaffold_7:12908666-12909184(+) (9)	NA	Q9SCQ7	Acidic leucine-rich nuclear phosphoprotein 32-related protein	AT3G50690.1	Leucine-rich repeat (LRR) family protein 	LOC_Os07g41694.1	"acidic leucine-rich nuclear phosphoprotein 32-related protein 1, putative, expressed"	Medtr8g093560.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
Ptp.6105.1.S1_at	A	A1TS	POPTR_0006s28260	POPTR_0006s28260 (11)	scaffold_6:26008151-26009269(+) (11)	NA	NA	NA	AT2G24860.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os09g25590.1	"tsi1-interacting protein TSIP1, putative, expressed"	Medtr3g138530.1	"Tsi1-interacting protein TSIP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6108.1.S1_at	A	A1TS	POPTR_0003s12700	POPTR_0003s12700 (11)	scaffold_3:13205792-13206750(-) (11)	NA	O22493	"Glutamate--cysteine ligase, chloroplastic"	AT4G23100.3	glutamate-cysteine ligase 	LOC_Os05g03820.3	"glutamate--cysteine ligase, chloroplast precursor, putative, expressed"	Medtr4g149470.1	"Glutamate--cysteine ligase, plant "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process	GO:0004357|glutamate-cysteine ligase activity	NA
Ptp.6109.1.S1_at	A	A1TS	POPTR_0007s06610	POPTR_0007s06610 (10)	scaffold_7:5026395-5028625(-) (10)	NA	NA	NA	AT5G09960.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g07380.1	expressed protein	Medtr3g144730.1	"4D11_4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6110.1.S1_at	A	A1TS	POPTR_0010s23540	POPTR_0010s23540 (11)	scaffold_10:20085824-20086358(+) (11)	NA	P51281	Uncharacterized protein ycf45	AT3G10420.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g08970.1	"uncharacterized protein ycf45, putative, expressed"	AC233660_32.1	"AAA ATPase, central region AC233660.2 122587-125547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6111.1.S1_at	A	A1TS	POPTR_0014s03500	POPTR_0014s03500 (11)	scaffold_14:2812823-2813377(+) (11)	NA	Q9SZA7	Probable disease resistance protein At4g33300	AT4G33300.2	ADR1-like 1 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr1g025080.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.6118.1.S1_a_at	A	A1TS	POPTR_0004s24090	POPTR_0004s24090 (11)	scaffold_4:22832288-22834263(-) (11)	NA	P57108	Glutathione S-transferase zeta class	AT2G02390.1	glutathione S-transferase zeta 1 	LOC_Os02g35590.2	"glutathione S-transferase, putative, expressed"	Medtr5g098100.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6119.1.S1_s_at	A	A1TS	POPTR_0008s05520	POPTR_0008s05520 (11)	scaffold_8:3199751-3199989(+) (11)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.2	OBF-binding protein 3 	LOC_Os03g60630.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.612.1.S1_s_at	A	A1TS	POPTR_0014s09770	POPTR_0014s09770 (11)	scaffold_14:7284318-7284764(+) (11)	NA	Q40191	Ras-related protein Rab11A	AT1G01200.1	RAB GTPase homolog A3 	LOC_Os09g35860.1	"ras-related protein, putative, expressed"	Medtr8g029570.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6120.1.S1_at	A	A1TS	POPTR_0010s16320	POPTR_0010s16320 (10)	scaffold_10:15288866-15290531(-) (10)	NA	Q9LRP7	Autophagy-related protein 8i	AT3G15580.1	Ubiquitin-like superfamily protein 	LOC_Os11g01010.1	"autophagy-related protein 8D, putative, expressed"	Medtr8g134240.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6122.1.A1_at	A	A2TS	POPTR_0011s12090	POPTR_0011s12100 (11)//POPTR_0011s12090 (11)	scaffold_11:14868535-14869108(-) (11)//scaffold_11:14886034-14886614(-) (11)	NA	Q9FJD5	Laccase-17	AT5G60020.1	laccase 17 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.6124.1.S1_at	A	A1TS	POPTR_0007s06210	POPTR_0007s06210 (10)	scaffold_7:4379126-4380099(+) (10)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G58950.1	Protein kinase superfamily protein 	LOC_Os01g10450.2	"protein kinase domain containing protein, expressed"	Medtr2g017390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6125.1.S1_at	A	A1TS	POPTR_0011s15670	POPTR_0011s15670 (11)	scaffold_11:17760511-17760634(+) (11)	NA	NA	NA	AT1G79160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6128.1.S1_s_at	A	A1TS	POPTR_0001s21120	POPTR_0001s21120 (11)	scaffold_1:19484040-19484336(+) (11)	NA	Q9M7M1	Ethylene receptor	AT1G66340.1	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.6130.1.S1_at	A	A1TS	POPTR_0008s08740	POPTR_0008s08740 (11)	scaffold_8:5399836-5400323(+) (11)	NA	Q93ZL5	Dof zinc finger protein DOF5.2	AT5G39660.2	cycling DOF factor 2 	LOC_Os01g15900.1	expressed protein	Medtr4g111860.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.6131.1.S1_s_at	A	A1TS	POPTR_0001s07860	POPTR_0001s07860 (11)	scaffold_1:5952797-5953122(+) (11)	NA	Q42798	Cytochrome P450 93A1	AT4G12300.1	"cytochrome P450, family 706, subfamily A, polypeptide 4 "	LOC_Os01g50490.1	"cytochrome P450, putative, expressed"	Medtr3g169570.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6132.1.A1_at	A	A1TS	POPTR_0008s18080	POPTR_0008s18080 (11)	scaffold_8:12118429-12118603(+) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT3G27320.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g67600.1	"CXE carboxylesterase, putative, expressed"	Medtr6g071120.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.6134.1.S1_at	A	A1TS	POPTR_0004s16800	POPTR_0004s16800 (11)	scaffold_4:17142886-17143851(-) (11)	NA	NA	NA	AT2G21385.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). "	LOC_Os09g36130.1	expressed protein	Medtr4g096640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6136.1.S1_at	A	A1TS	POPTR_0012s10220	POPTR_0012s10220 (11)	scaffold_12:11038872-11039379(+) (11)	NA	Q9FMV1	"Uncharacterized protein At5g63510, mitochondrial"	AT5G63510.1	gamma carbonic anhydrase like 1 	LOC_Os02g30460.1	"uncharacterized protein MJ0304, putative, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6136.1.S1_s_at	A	A1TS	POPTR_0012s10220	POPTR_0012s10220 (11)	scaffold_12:11038915-11039389(+) (11)	NA	Q9FMV1	"Uncharacterized protein At5g63510, mitochondrial"	AT5G63510.1	gamma carbonic anhydrase like 1 	LOC_Os02g30460.1	"uncharacterized protein MJ0304, putative, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6137.1.S1_s_at	A	A1TS	POPTR_0014s02890	POPTR_0014s02890 (11)	scaffold_14:2379228-2380894(+) (11)	NA	Q9NBK5	Serine/threonine-protein kinase tricorner	AT5G09890.1	Protein kinase family protein 	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g024310.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.6138.1.S1_at	A	A1MS	POPTR_0001s41030	POPTR_0001s41030 (9)	scaffold_1:40669238-40669717(-) (9)	NA	Q9LJR3	Protein SPA1-RELATED 3	AT3G15354.1	SPA1-related 3 	LOC_Os01g52640.3	"suppressor of phythchrome A, putative, expressed"	Medtr2g100380.1	Protein kinase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.614.1.A1_at	A	A1TS	POPTR_0078s00220	POPTR_0078s00220 (11)	scaffold_78:34039-34571(-) (11)	NA	Q38867	Peptidyl-prolyl cis-trans isomerase CYP19-3	AT3G56070.2	rotamase cyclophilin 2 	LOC_Os09g39780.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.6141.1.S1_at	A	A1TS	POPTR_0015s11570	POPTR_0015s11570 (10)	scaffold_15:12141739-12142392(-) (10)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os02g52860.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr7g096810.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6143.1.S1_at	A	A1TS	POPTR_0006s02610	POPTR_0006s02610 (10)	scaffold_6:1674682-1675263(-) (10)	NA	NA	NA	AT2G41120.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF309 (InterPro:IPR005500); Has 349 Blast hits to 349 proteins in 112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). 	LOC_Os11g03580.1	expressed protein	Medtr7g105030.1	Protein of unknown function DUF309 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6147.1.S1_s_at	A	A1TS	POPTR_0019s08300	POPTR_0019s08300 (11)	scaffold_19:9785484-9787572(-) (11)	NA	P53665	"Acyl carrier protein, mitochondrial"	AT1G65290.1	mitochondrial acyl carrier protein 2 	LOC_Os03g22950.1	"acyl carrier protein, putative, expressed"	Medtr7g090000.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
Ptp.615.1.S1_s_at	A	A1TS	POPTR_0010s20620	POPTR_0010s20620 (11)	scaffold_10:18130054-18130434(-) (11)	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os03g16150.3	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.6150.1.S1_s_at	A	A1TS	POPTR_0008s17410	POPTR_0008s17410 (11)	scaffold_8:11683043-11683344(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6151.1.A1_a_at	A	A1TS	POPTR_0012s05430	POPTR_0012s05430 (11)	scaffold_12:5063031-5063757(-) (11)	NA	NA	NA	AT5G23040.1	Protein of unknown function (DUF3353) 	LOC_Os09g21250.1	expressed protein	Medtr8g115580.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6153.1.S1_at	A	A1TS	POPTR_0003s18630	POPTR_0003s18630 (11)	scaffold_3:17633613-17634045(+) (11)	NA	NA	NA	AT2G24530.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g56300.1	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6154.1.S1_s_at	A	A1TS	POPTR_0015s04430	POPTR_0015s04430 (11)	scaffold_15:4580690-4580876(+) (11)	NA	NA	NA	AT1G18180.1	Protein of unknown function (DUF1295) 	LOC_Os03g50070.1	"DUF1295 domain containing protein, putative, expressed"	Medtr4g155170.1	Protein of unknown function DUF1295 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6155.1.A1_a_at	A	A1TS	POPTR_0001s07870	POPTR_0001s07870 (11)	scaffold_1:5958659-5958983(-) (11)	NA	Q8H1H9	Primary amine oxidase	AT4G12290.1	Copper amine oxidase family protein 	LOC_Os04g20164.1	"amine oxidase precursor, putative, expressed"	Medtr3g109760.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
Ptp.6156.1.S1_at	A	A1TS	POPTR_0019s15350	POPTR_0019s15350 (11)	scaffold_19:15874772-15875795(-) (11)	NA	B4PS83	Cohesin loading complex subunit SCC4 homolog	AT5G51340.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g28010.1	expressed protein	Medtr5g083820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6159.2.S1_at	A	A1TS	POPTR_0001s12140	POPTR_0001s12140 (9)	scaffold_1:9401462-9401494(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.616.1.A1_at	A	A1TS	POPTR_0012s04660	POPTR_0012s04660 (9)	scaffold_12:4011016-4011294(+) (9)	NA	P90587	66 kDa stress protein	AT3G18060.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g03510.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g155430.1	"66 kDa stress protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6161.1.S1_at	A	A1TS	POPTR_0014s12430	POPTR_0014s12430 (10)	scaffold_14:9171881-9172385(-) (10)	NA	NA	NA	AT3G62810.1	complex 1 family protein / LVR family protein 	LOC_Os05g30030.1	expressed protein	Medtr1g108410.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6163.1.S1_s_at	A	A1TS	POPTR_0006s08420	POPTR_0006s08420 (11)	scaffold_6:6130344-6131029(-) (11)	NA	Q9M354	Probable ADP-ribosylation factor GTPase-activating protein AGD6	AT3G53710.2	ARF-GAP domain 6 	LOC_Os03g17020.2	"GTPase-activating protein, putative, expressed"	Medtr7g118270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.6165.1.S1_at	A	A1TS	POPTR_0011s05780	POPTR_0011s05780 (11)	scaffold_11:5796725-5797176(-) (11)	NA	Q9SGP6	Glutaredoxin-C9	AT1G28480.1	Thioredoxin superfamily protein 	LOC_Os01g47760.1	"OsGrx_I1 - glutaredoxin subgroup III, expressed"	Medtr4g108920.1	"Monothiol glutaredoxin-S5, related "	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.617.1.S1_at	A	A1TS	POPTR_0004s18840	POPTR_0004s18840 (11)	scaffold_4:18577130-18577257(+) (11)	NA	Q9SVE5	Expansin-like A2	AT4G38400.1	expansin-like A2 	LOC_Os03g04020.1	"expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6170.1.S1_at	A	A1TS	POPTR_0001s22180	POPTR_0001s22180 (11)	scaffold_1:20818822-20820583(+) (11)	NA	Q9XFB0	Putative axial regulator YABBY 2	AT1G08465.1	Plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr2g104680.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6172.1.S1_s_at	A	A1TS	POPTR_0012s07070	POPTR_0012s07070 (11)	scaffold_12:7752382-7752865(+) (11)	POPTR_0003s16640 (8)	Q9QXN3	Activating signal cointegrator 1	AT3G47610.1	transcription regulators;zinc ion binding 	LOC_Os09g24660.1	"AGAP000554-PA, putative, expressed"	Medtr8g112270.1	"Zinc finger, C2HC5-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0030528|transcription regulator activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.6178.1.S1_s_at	A	A1TS	POPTR_0002s00360	POPTR_0002s00360 (11)	scaffold_2:95895-96502(-) (11)	NA	P0AF48	UPF0047 protein yjbQ	AT1G21065.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). 	LOC_Os02g09460.1	"GA16396-PA, putative, expressed"	Medtr4g114450.1	Protein of unknown function UPF0047 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6178.3.S1_at	A	A1MS	POPTR_0002s00360	POPTR_0002s00360 (11)	scaffold_2:95687-95872(-) (11)	NA	P0AF48	UPF0047 protein yjbQ	AT1G21065.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). 	LOC_Os02g09460.1	"GA16396-PA, putative, expressed"	Medtr4g114450.1	Protein of unknown function UPF0047 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6179.1.S1_at	A	A1TS	POPTR_0008s20050	POPTR_0008s20050 (10)	scaffold_8:13867058-13867493(+) (10)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.618.1.A1_at	A	A1TS	POPTR_0018s00720	POPTR_0018s00720 (11)	scaffold_18:631318-633247(-) (11)	NA	P33399	La protein homolog	AT4G32720.2	La protein 1 	LOC_Os02g39700.1	"RNA binding protein, putative, expressed"	Medtr2g024800.1	RNA-binding region RNP-1 (RNA recognition motif); Winged helix repressor DNA-binding 	NA	GO:0003676|nucleic acid binding	NA
Ptp.6180.1.S1_s_at	A	A1TS	POPTR_0001s10880	POPTR_0001s10880 (11)	scaffold_1:8434264-8434924(-) (11)	NA	P37707	B2 protein	AT5G42050.1	DCD (Development and Cell Death) domain protein 	LOC_Os01g36950.2	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6183.1.S1_at	A	A1MS	POPTR_0016s06500	POPTR_0016s06500 (11)	scaffold_16:4365702-4365985(+) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT5G06570.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g06880.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.6185.1.S1_at	A	A1TS	POPTR_0005s11710	POPTR_0005s11710 (11)	scaffold_5:8534969-8535249(+) (11)	NA	NA	NA	AT2G17972.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 34 Blast hits to 34 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os06g50130.1	expressed protein	Medtr8g090030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6186.1.S1_at	A	A1TS	POPTR_0001s30900	POPTR_0001s30900 (11)	scaffold_1:29317251-29317300(+) (11)	NA	Q2N5X0	Kynurenine formamidase	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6187.1.S1_x_at	A	A1TS	POPTR_0004s01940	POPTR_0004s01940 (11)	scaffold_4:1205999-1206386(-) (11)	NA	Q9SSK7	MLP-like protein 34	AT1G70880.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	NA	NA	Medtr8g012990.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.6188.1.S1_at	A	A1TA	POPTR_0004s01510	POPTR_0004s01510 (9)	scaffold_4:867238-867284(-) (9)	NA	Q9SB81	Peroxidase 42	AT4G21960.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr8g146760.2	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.6188.1.S1_s_at	A	A1TS	POPTR_0006s23310	POPTR_0006s23310 (11)	scaffold_6:22072371-22072738(+) (10)	POPTR_0018s04900 (6)//POPTR_0563s00200 (6)	Q41365	26S protease regulatory subunit 7	AT1G53750.1	regulatory particle triple-A 1A 	LOC_Os06g09290.1	"26S protease regulatory subunit 7, putative, expressed"	Medtr1g121600.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.6189.2.S1_a_at	A	A2TS	POPTR_0015s08510	POPTR_0015s08510 (11)//POPTR_0559s00200 (11)	scaffold_15:9773317-9773363(-) (11)//scaffold_559:2163-2209(-) (11)	NA	NA	NA	AT5G62865.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). 	LOC_Os02g50940.1	"NHL repeat-containing protein, putative, expressed"	Medtr8g125480.1	"IS10 transposase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.619.1.S1_s_at	A	A1TS	POPTR_0005s18120	POPTR_0005s18120 (11)	scaffold_5:16194021-16195054(-) (11)	NA	P41210	Caltractin	AT3G50360.1	centrin2 	LOC_Os07g42660.1	"OsCML13 - Calmodulin-related calcium sensor protein, expressed"	Medtr7g080540.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6191.1.S1_at	A	A1TS	POPTR_0016s04290	POPTR_0016s04290 (11)	scaffold_16:2483415-2483453(+) (11)	NA	Q8W4L0	Probable calcium-binding protein CML49	AT3G10300.4	Calcium-binding EF-hand family protein 	LOC_Os11g04480.1	"peflin, putative, expressed"	Medtr2g107710.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6191.1.S1_s_at	A	A1TS	POPTR_0016s04290	POPTR_0016s04290 (11)	scaffold_16:2482618-2483401(+) (11)	NA	Q8W4L0	Probable calcium-binding protein CML49	AT3G10300.4	Calcium-binding EF-hand family protein 	LOC_Os11g04480.1	"peflin, putative, expressed"	Medtr2g107710.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6192.1.S1_s_at	A	A1TS	POPTR_0019s01520	POPTR_0019s01520 (11)	scaffold_19:1339432-1339926(+) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g43040.2	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.6193.1.S1_at	A	A1TS	POPTR_0013s07910	POPTR_0013s07910 (11)	scaffold_13:6856708-6860725(-) (11)	NA	NA	NA	AT3G03070.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os08g06430.1	"mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed"	Medtr4g107210.1	"mitochondrial NADH-ubiquinone oxidoreductase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6194.1.S1_s_at	A	A1TS	POPTR_0001s09660	POPTR_0001s09660 (11)	scaffold_1:7361969-7362821(-) (11)	NA	O81742	Beta-adaptin-like protein C	AT4G23460.1	Adaptin family protein 	LOC_Os03g23950.1	"adapitin protein, putative, expressed"	Medtr4g103980.1	"Adaptin, N-terminal; Alpha/gamma adaptin, C-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.6195.1.S1_at	A	A1TS	POPTR_0011s11490	POPTR_0011s11490 (11)	scaffold_11:14237339-14237946(+) (11)	NA	Q9C8M2	"Peptide methionine sulfoxide reductase B1, chloroplastic"	AT1G53670.1	methionine sulfoxide reductase B 1 	LOC_Os06g27760.2	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr4g121860.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
Ptp.6196.1.S1_at	A	A1TS	POPTR_0008s17420	POPTR_0008s17420 (9)	scaffold_8:11691867-11692209(+) (9)	NA	Q9LIR6	"Beta-amylase 1, chloroplastic"	AT3G23920.1	beta-amylase 1 	LOC_Os03g04770.1	"beta-amylase, putative, expressed"	Medtr5g013790.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.6197.1.S1_s_at	A	A1TS	POPTR_0009s10420	POPTR_0009s10420 (11)	scaffold_9:8944675-8945475(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g129860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.62.1.A1_s_at	A	A1TS	POPTR_0003s14600	POPTR_0003s14600 (11)	scaffold_3:14634507-14634929(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT4G10730.1	Protein kinase superfamily protein 	LOC_Os03g02320.1	"STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g006330.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.620.1.S1_at	A	A1TS	POPTR_0001s06870	POPTR_0001s06870 (11)	scaffold_1:5246074-5246906(-) (11)	NA	B9GLX8	Retinoblastoma-related protein	AT3G12280.2	retinoblastoma-related 1 	LOC_Os08g42600.2	"retinoblastoma-related protein-like, putative, expressed"	Medtr8g043930.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6200.1.S1_at	A	A1TS	POPTR_0011s03020	POPTR_0011s03020 (11)	scaffold_11:2997117-2997706(+) (11)	NA	O81481	Eukaryotic translation initiation factor 4E-1	AT4G18040.1	eukaryotic translation initiation factor 4E 	LOC_Os01g73880.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr2g021870.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.6201.1.S1_s_at	A	A1TS	POPTR_0018s05190	POPTR_0018s05190 (11)	scaffold_18:4686566-4686979(+) (11)	NA	O04089	"Zinc transporter 4, chloroplastic"	AT1G10970.1	zinc transporter 4 precursor 	LOC_Os06g37010.2	"metal cation transporter, putative, expressed"	Medtr3g139990.1	"Cytochrome c oxidase, subunit I; Zinc/iron permease "	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
Ptp.6203.1.S1_s_at	A	A1TS	POPTR_0001s19070	POPTR_0001s19070 (11)	scaffold_1:16366536-16366803(+) (11)	NA	Q869R9	Myb-like protein J	AT3G16350.1	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.6203.2.S1_at	A	A1MS	POPTR_0001s19070	POPTR_0001s19070 (11)	scaffold_1:16366829-16366956(+) (11)	NA	Q869R9	Myb-like protein J	AT3G16350.1	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.6204.1.S1_a_at	A	A2TS	POPTR_0006s18970	POPTR_0018s10650 (11)//POPTR_0006s18970 (11)	scaffold_18:11544987-11545172(+) (11)//scaffold_6:17821046-17821231(+) (11)	NA	Q38885	"Preprotein translocase subunit secY, chloroplastic"	AT2G18710.1	SECY homolog 1 	LOC_Os08g15460.1	"preprotein translocase subunit secY, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
Ptp.6204.2.S1_at	A	A1TS	POPTR_0018s10650	POPTR_0018s10650 (9)	scaffold_18:11545161-11545464(+) (9)	NA	Q38885	"Preprotein translocase subunit secY, chloroplastic"	AT2G18710.1	SECY homolog 1 	LOC_Os08g15460.1	"preprotein translocase subunit secY, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
Ptp.6208.1.S1_s_at	A	A1TS	POPTR_0022s00350	POPTR_0022s00350 (11)	scaffold_22:81505-81918(-) (11)	NA	O04486	Ras-related protein RABA2a	AT1G09630.1	RAB GTPase 11C 	LOC_Os05g01480.1	"ras-related protein, putative, expressed"	Medtr2g005340.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6209.1.A1_at	A	A1TS	POPTR_0006s29550	POPTR_0006s29550 (9)	scaffold_6:26887246-26887651(+) (9)	NA	Q9ZQ34	Uncharacterized protein At2g24330	AT4G31080.1	Protein of unknown function (DUF2296) 	LOC_Os02g41990.2	expressed protein	Medtr3g133570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6210.1.S1_at	A	A1TS	POPTR_0001s03020	POPTR_0001s03020 (11)	scaffold_1:2387265-2387481(+) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os09g24230.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6210.1.S1_s_at	A	A1TS	POPTR_0001s03020	POPTR_0001s03020 (11)	scaffold_1:2386903-2387536(+) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os09g24230.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6212.1.S1_s_at	A	A1TS	POPTR_0005s20090	POPTR_0005s20090 (11)	scaffold_5:19100088-19100730(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6213.1.S1_at	A	A1TS	POPTR_0008s00350	POPTR_0008s00350 (11)	scaffold_8:116230-116503(+) (11)	NA	P34899	"Serine hydroxymethyltransferase, mitochondrial"	AT4G37930.1	serine transhydroxymethyltransferase 1 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.6213.1.S1_x_at	A	A1TS	POPTR_0008s00350	POPTR_0008s00350 (11)	scaffold_8:116214-116627(+) (11)	NA	P34899	"Serine hydroxymethyltransferase, mitochondrial"	AT4G37930.1	serine transhydroxymethyltransferase 1 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.6214.1.S1_s_at	A	A1TS	POPTR_0010s06490	POPTR_0010s06490 (11)	scaffold_10:7837720-7838152(-) (11)	NA	NA	NA	AT1G67660.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os04g40900.1	"exonuclease, putative"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6215.2.S1_s_at	A	A2TS	POPTR_0008s09870	POPTR_0010s16330 (11)//POPTR_0008s09870 (11)	scaffold_10:15295025-15295137(+) (11)//scaffold_8:6129873-6129985(-) (11)	NA	A9PEK8	S-adenosylmethionine synthase 3	AT3G17390.1	S-adenosylmethionine synthetase family protein 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.6219.1.S1_at	A	A1TS	POPTR_0001s25670	POPTR_0001s25670 (11)	scaffold_1:24726784-24727254(-) (11)	NA	NA	NA	AT3G47070.1	"LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr5g078450.1	"thylakoid soluble phosphoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6220.1.A1_a_at	A	A1TS	POPTR_0002s09350	POPTR_0002s09350 (10)	scaffold_2:6660207-6660268(-) (10)	NA	NA	NA	AT1G22160.1	Protein of unknown function (DUF581) 	LOC_Os08g31510.1	"DUF581 domain containing protein, expressed"	CU651566_1.1	Protein of unknown function DUF581 CU651566.9 6700-5475 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6220.1.A1_at	A	A1TS	POPTR_0002s09350	POPTR_0002s09350 (11)	scaffold_2:6660273-6660475(-) (11)	NA	NA	NA	AT1G22160.1	Protein of unknown function (DUF581) 	LOC_Os08g31510.1	"DUF581 domain containing protein, expressed"	CU651566_1.1	Protein of unknown function DUF581 CU651566.9 6700-5475 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6221.1.A1_a_at	A	A1TS	POPTR_0006s22950	POPTR_0006s22950 (11)	scaffold_6:21803495-21804791(-) (11)	NA	NA	NA	AT5G03880.1	Thioredoxin family protein 	LOC_Os08g44400.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr3g013180.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.6221.2.A1_at	A	A1TS	POPTR_0006s22950	POPTR_0006s22950 (9)	scaffold_6:21802842-21803045(-) (9)	NA	NA	NA	AT5G03880.1	Thioredoxin family protein 	LOC_Os08g44400.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr3g013180.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.6223.1.S1_s_at	A	A1TS	POPTR_0005s22880	POPTR_0005s22880 (11)	scaffold_5:21769340-21769796(+) (11)	NA	Q9SKX5	Probable polyamine oxidase 2	AT2G43020.1	polyamine oxidase 2 	LOC_Os04g53190.2	"CPuORF12 - conserved peptide uORF-containing transcript, expressed"	Medtr5g097430.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.6226.1.S1_at	A	A1TS	POPTR_0001s45520	POPTR_0001s45520 (9)	scaffold_1:46031438-46032700(+) (9)	NA	Q9LXS1	Metal tolerance protein A2	AT3G58810.1	metal tolerance protein A2 	LOC_Os05g03780.1	"cation efflux family protein, putative, expressed"	Medtr2g041270.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
Ptp.623.1.A1_a_at	A	A1MS	POPTR_0001s28320	POPTR_0001s28320 (10)	scaffold_1:27117960-27118589(-) (10)	NA	Q9LFC5	Pentatricopeptide repeat-containing protein At5g01110	AT5G01110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06910.1	PPR repeat containing protein	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6230.1.S1_at	A	A1TS	POPTR_0002s01570	POPTR_0002s01570 (11)	scaffold_2:843951-844599(-) (11)	NA	P17859	Alpha-amylase	AT1G76130.1	alpha-amylase-like 2 	LOC_Os04g33040.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
Ptp.6232.1.S1_at	A	A1TS	POPTR_0011s14840	POPTR_0011s14840 (9)	scaffold_11:17096870-17097995(+) (9)	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.6233.1.S1_at	A	A1TS	POPTR_0006s24570	POPTR_0006s24570 (11)	scaffold_6:23162011-23162232(+) (11)	NA	O49954	"Glycine dehydrogenase [decarboxylating], mitochondrial"	AT4G33010.1	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6234.1.S1_at	A	A1TS	POPTR_0009s07700	POPTR_0009s07700 (9)	scaffold_9:7131562-7134047(+) (9)	NA	NA	NA	AT5G58600.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18110.1	"proteins of unknown function domain containing protein, putative, expressed"	Medtr5g079650.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6236.1.S1_at	A	A1TS	POPTR_0006s16660	POPTR_0006s16660 (11)	scaffold_6:14552920-14555228(+) (11)	NA	Q9N5K2	"DNA-directed RNA polymerases I, II, and III subunit RPABC1"	AT3G22320.1	Eukaryotic rpb5 RNA polymerase subunit family protein 	LOC_Os01g59140.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed"	Medtr5g005650.1	"RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
Ptp.6241.1.S1_at	A	A1MS	POPTR_0008s15170	POPTR_0008s15170 (10)	scaffold_8:10157414-10157749(+) (10)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6246.1.S1_s_at	A	A1TS	POPTR_0014s12250	POPTR_0014s12250 (11)	scaffold_14:9045813-9046091(-) (11)	NA	P32292	Indole-3-acetic acid-induced protein ARG2	AT4G02380.1	senescence-associated gene 21 	NA	NA	NA	NA	GO:0006950|response to stress	NA	NA
Ptp.6247.1.S1_s_at	A	A1TS	POPTR_0006s09650	POPTR_0006s09650 (11)	scaffold_6:7086943-7087293(-) (11)	NA	Q9Y2M2	Uncharacterized protein C3orf32	AT2G38000.1	chaperone protein dnaJ-related 	LOC_Os05g25210.1	expressed protein	Medtr2g085150.1	"Uncharacterized protein C3orf32, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6247.2.S1_a_at	A	A1TS	POPTR_0006s09650	POPTR_0006s09650 (11)	scaffold_6:7087235-7087444(-) (11)	NA	Q9Y2M2	Uncharacterized protein C3orf32	AT2G38000.1	chaperone protein dnaJ-related 	LOC_Os05g25210.1	expressed protein	Medtr2g085150.1	"Uncharacterized protein C3orf32, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.625.3.S1_at	A	A1TS	POPTR_0001s30030	POPTR_0001s30030 (11)	scaffold_1:28608892-28608992(-) (11)	NA	Q5ZKQ8	ADP-ribosylation factor-like protein 8A	AT3G49870.1	ADP-ribosylation factor-like A1C 	LOC_Os03g10370.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g015500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6252.1.S1_a_at	A	A1TS	POPTR_0005s26030	POPTR_0005s26030 (11)	scaffold_5:24170358-24171095(-) (11)	NA	Q93X17	Snakin-2	AT1G75750.2	GAST1 protein homolog 1 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr3g156410.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6252.2.S1_at	A	A1MS	POPTR_0005s26030	POPTR_0005s26030 (11)	scaffold_5:24170852-24171016(-) (11)	NA	Q93X17	Snakin-2	AT1G75750.2	GAST1 protein homolog 1 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr3g156410.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6254.1.S1_at	A	A1TS	POPTR_0003s03400	POPTR_0003s03400 (9)	scaffold_3:3783878-3784100(-) (9)	NA	NA	NA	AT4G17670.1	Protein of unknown function (DUF581) 	LOC_Os04g49660.1	"DUF581 domain containing protein, expressed"	Medtr5g013920.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6254.2.S1_s_at	A	A1TS	POPTR_0003s03400	POPTR_0003s03400 (11)	scaffold_3:3784266-3785023(-) (11)	NA	NA	NA	AT4G17670.1	Protein of unknown function (DUF581) 	LOC_Os04g49660.1	"DUF581 domain containing protein, expressed"	Medtr5g013920.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6255.1.S1_at	A	A1TS	POPTR_0014s15330	POPTR_0014s15330 (11)	scaffold_14:11415479-11416043(-) (11)	NA	Q7DFU6	Putative uncharacterized protein yghX	AT2G32520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g34700.1	"dienelactone hydrolase family protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
Ptp.6257.1.S1_at	A	A1TS	POPTR_0001s38480	POPTR_0001s38480 (11)	scaffold_1:37600742-37600931(-) (11)	NA	Q8LPR5	Transcription factor TCP4	AT3G15030.3	TCP family transcription factor 4 	LOC_Os01g11550.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6258.1.S1_at	A	A1TS	POPTR_0008s11560	POPTR_0008s11560 (9)	scaffold_8:7359623-7360205(-) (9)	NA	Q9S713	"Serine/threonine-protein kinase STN7, chloroplastic"	AT1G68830.1	STT7 homolog STN7 	LOC_Os05g47560.1	"serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed"	Medtr5g069380.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6259.1.A1_at	A	A1TS	POPTR_0004s03240	POPTR_0004s03240 (10)	scaffold_4:2188102-2188293(+) (10)	NA	NA	NA	AT4G05120.1	Major facilitator superfamily protein 	LOC_Os07g37100.2	"nucleoside transporter, putative, expressed"	Medtr2g103000.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
Ptp.6259.1.A1_s_at	A	A1TS	POPTR_0004s03240	POPTR_0004s03240 (11)	scaffold_4:2188496-2188746(+) (11)	NA	NA	NA	AT4G05120.1	Major facilitator superfamily protein 	LOC_Os07g37100.2	"nucleoside transporter, putative, expressed"	Medtr2g103000.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
Ptp.626.1.S1_a_at	A	A1TS	POPTR_0002s20400	POPTR_0002s20400 (11)	scaffold_2:16460325-16462046(-) (11)	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os03g22180.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6260.1.S1_at	A	A1TS	POPTR_0009s04650	POPTR_0009s04650 (9)	scaffold_9:4942728-4944369(-) (9)	NA	P32811	"Alpha-glucan phosphorylase, H isozyme"	AT3G46970.1	alpha-glucan phosphorylase 2 	LOC_Os01g63270.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr2g017970.1	"Glycosyl transferase, family 35; Amino acid-binding ACT "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
Ptp.6261.2.S1_a_at	A	A1TS	POPTR_0009s01810	POPTR_0009s01810 (11)	scaffold_9:2312443-2313600(-) (11)	NA	Q8LAD0	Pyridoxal biosynthesis protein PDX2	AT5G60540.1	pyridoxine biosynthesis 2 	LOC_Os02g03740.1	"pyridoxal biosynthesis protein PDX2, putative, expressed"	Medtr4g013010.1	SNO glutamine amidotransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6262.1.S1_at	A	A1TS	POPTR_0001s36050	POPTR_0001s36050 (11)	scaffold_1:34525332-34527352(+) (11)	NA	Q8LB02	"Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial"	AT5G40650.1	succinate dehydrogenase 2-2 	LOC_Os08g02640.5	"succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6268.1.A1_s_at	A	A1TS	POPTR_0007s13820	POPTR_0007s13820 (11)	scaffold_7:13837795-13846131(-) (11)	NA	Q9NQE7	Thymus-specific serine protease	AT4G36195.3	Serine carboxypeptidase S28 family protein 	LOC_Os10g36760.1	"OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr8g090320.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
Ptp.6269.1.S1_s_at	A	A1TS	POPTR_0005s12490	POPTR_0005s12490 (11)	scaffold_5:9252025-9252506(-) (11)	NA	Q55CU8	Random slug protein 5	AT1G75170.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g51430.2	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr8g093390.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.627.2.S1_at	A	A1MS	POPTR_0010s20920	POPTR_0010s20920 (11)	scaffold_10:18340713-18340834(-) (11)	NA	Q02790	Peptidyl-prolyl cis-trans isomerase FKBP4	AT3G55520.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os05g38370.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g087660.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.627.2.S1_s_at	A	A1TS	POPTR_0010s20920	POPTR_0010s20920 (11)	scaffold_10:18341253-18341681(-) (11)	NA	Q02790	Peptidyl-prolyl cis-trans isomerase FKBP4	AT3G55520.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os05g38370.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g087660.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.6273.1.S1_at	A	A1TS	POPTR_0001s04620	POPTR_0001s04620 (11)	scaffold_1:3590512-3591602(-) (11)	NA	Q9C895	E3 ubiquitin-protein ligase BRE1-like 2	AT1G55250.1	histone mono-ubiquitination 2 	LOC_Os10g41590.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC233662_35.1	"E3 ubiquitin-protein ligase BRE1-like 2, related AC233662.1 173535-167958 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6274.1.S1_s_at	A	A1TS	POPTR_0001s09270	POPTR_0001s09270 (11)	scaffold_1:7089470-7089780(+) (11)	NA	O23814	Probable phospholipid hydroperoxide glutathione peroxidase	AT4G11600.1	glutathione peroxidase 6 	LOC_Os02g44500.1	"glutathione peroxidase, putative, expressed"	Medtr4g149540.3	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
Ptp.6274.1.S1_x_at	A	A1TS	POPTR_0001s09270	POPTR_0001s09270 (11)	scaffold_1:7088691-7090131(+) (11)	NA	O23814	Probable phospholipid hydroperoxide glutathione peroxidase	AT4G11600.1	glutathione peroxidase 6 	LOC_Os02g44500.1	"glutathione peroxidase, putative, expressed"	Medtr4g149540.3	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
Ptp.6275.1.S1_s_at	A	A1TS	POPTR_0015s11940	POPTR_0015s11940 (11)	scaffold_15:12423667-12424646(+) (11)	NA	NA	NA	AT5G51010.1	Rubredoxin-like superfamily protein 	LOC_Os11g32500.1	"rubredoxin family protein, putative, expressed"	Medtr3g151410.1	Rubredoxin-type Fe(Cys)4 protein 	NA	GO:0046872|metal ion binding||GO:0009055|electron carrier activity	NA
Ptp.6277.2.S1_at	A	A1TS	POPTR_0014s00810	POPTR_0014s00810 (10)	scaffold_14:766529-766585(+) (10)	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	LOC_Os03g12990.1	"phytosulfokines precursor, putative, expressed"	Medtr5g015260.1	Phytosulfokine 	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
Ptp.6278.1.S1_at	A	A1TS	POPTR_0003s13400	POPTR_0003s13400 (9)	scaffold_3:13797952-13798049(-) (9)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6278.1.S1_s_at	A	A1TS	POPTR_0003s13400	POPTR_0003s13400 (11)	scaffold_3:13797402-13797950(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6281.1.S1_at	A	A1TS	POPTR_0001s09200	POPTR_0001s09200 (10)	scaffold_1:7040214-7040552(-) (10)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6284.1.S1_at	A	A1TS	POPTR_0008s06940	POPTR_0008s06940 (11)	scaffold_8:4194515-4194725(+) (11)	NA	Q9XEE6	Zinc finger CCCH domain-containing protein 29	AT2G40140.2	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g090250.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.6286.1.S1_s_at	A	A1TS	POPTR_0017s06610	POPTR_0017s06610 (11)	scaffold_17:5014691-5016842(-) (11)	NA	Q5PP37	Histone-lysine N-methyltransferase ATXR2	AT3G21820.1	histone-lysine N-methyltransferase ATXR2 	LOC_Os04g53700.1	"zinc finger protein, putative, expressed"	Medtr2g103680.1	"Histone-lysine N-methyltransferase ATXR2, putative "	NA	GO:0008270|zinc ion binding	NA
Ptp.6287.1.S1_at	A	A1TS	POPTR_0003s15670	POPTR_0003s15670 (11)	scaffold_3:15430120-15430644(+) (11)	POPTR_0001s12500 (6)	Q9STE8	"Protein TOC75-3, chloroplastic"	AT3G46740.1	translocon at the outer envelope membrane of chloroplasts 75-III 	LOC_Os03g16440.1	"outer membrane protein, OMP85 family, putative, expressed"	Medtr4g084320.1	"Bacterial surface antigen (D15); Chloroplast envelope protein translocase, IAP75 "	NA	NA	GO:0019867|outer membrane
Ptp.6289.1.S1_at	A	A1TS	POPTR_0003s08590	POPTR_0003s08590 (11)	scaffold_3:9987131-9987341(+) (11)	NA	Q94EJ6	Probable methyltransferase PMT14	AT4G18030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.6290.1.S1_at	A	A2TS	POPTR_0010s17170	POPTR_0010s17170 (11)//POPTR_0008s09030 (9)	scaffold_10:15880271-15882181(+) (11)//scaffold_8:5603016-5604897(-) (9)	NA	P18160	Dual specificity protein kinase pyk1	AT1G14000.1	VH1-interacting kinase 	LOC_Os07g43900.1	"protein kinase domain containing protein, expressed"	Medtr5g099160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6292.1.S1_at	A	A1TS	POPTR_0013s02150	POPTR_0013s02150 (10)	scaffold_13:1292164-1292335(-) (10)	NA	O81635	Kinesin-4	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.6293.1.S1_s_at	A	A2TS	POPTR_0001s25780	POPTR_0001s25780 (11)//POPTR_0009s04990 (11)	scaffold_1:24809164-24809702(-) (11)//scaffold_9:5194964-5195458(-) (11)	NA	Q84T03	DEAD-box ATP-dependent RNA helicase 27	AT3G18600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g58810.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g115790.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.6294.1.S1_a_at	A	A2TS	POPTR_0002s22210	POPTR_0014s16270 (11)//POPTR_0002s22210 (11)	scaffold_14:12356920-12356966(-) (11)//scaffold_2:18876442-18876488(-) (11)	NA	Q9LUB7	Protein OBERON 2	AT5G48160.2	Protein of unknown function (DUF1423) 	LOC_Os12g32980.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr5g105070.1	"Zinc finger, PHD-type; Arabidopsis thaliana 130.7kDa hypothetical protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6294.1.S1_s_at	A	A1TS	POPTR_0014s16270	POPTR_0014s16270 (11)	scaffold_14:12354833-12356759(-) (11)	NA	Q9LUB7	Protein OBERON 2	AT5G48160.2	Protein of unknown function (DUF1423) 	LOC_Os12g32980.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr5g105070.1	"Zinc finger, PHD-type; Arabidopsis thaliana 130.7kDa hypothetical protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6294.2.S1_at	A	A1MS	POPTR_0002s22210	POPTR_0002s22210 (9)	scaffold_2:18876032-18876407(-) (9)	NA	Q9LUB7	Protein OBERON 2	AT5G48160.2	Protein of unknown function (DUF1423) 	LOC_Os12g32980.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr5g105070.1	"Zinc finger, PHD-type; Arabidopsis thaliana 130.7kDa hypothetical protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6295.1.S1_s_at	A	A1TS	POPTR_0001s45250	POPTR_0001s45250 (11)	scaffold_1:45756503-45756706(-) (11)	NA	Q84WP6	NAC domain-containing protein 43	AT2G46770.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g02300.1	"no apical meristem protein, putative, expressed"	Medtr4g041220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.6298.1.S1_at	A	A1TS	POPTR_0019s09640	POPTR_0019s09640 (10)	scaffold_19:11241228-11244834(-) (10)	NA	Q5ZJX4	RNA-binding protein 38	AT1G33470.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g041420.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.6299.1.S1_at	A	A1TS	POPTR_0017s00430	POPTR_0017s00430 (11)	scaffold_17:144860-145973(+) (11)	NA	Q54T05	Serine/threonine-protein kinase rio2	AT3G51270.1	protein serine/threonine kinases;ATP binding;catalytics 	LOC_Os01g66520.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr4g165610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.6299.2.S1_s_at	A	A1TS	POPTR_0017s00430	POPTR_0017s00430 (11)	scaffold_17:141356-141799(+) (11)	NA	Q54T05	Serine/threonine-protein kinase rio2	AT3G51270.1	protein serine/threonine kinases;ATP binding;catalytics 	LOC_Os01g66520.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr4g165610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.630.1.S1_at	A	A1TS	POPTR_0008s05390	POPTR_0008s05390 (11)	scaffold_8:3114204-3116399(-) (11)	NA	Q42540	Ubiquitin-conjugating enzyme E2 7	AT5G59300.1	ubiquitin carrier protein 7 	LOC_Os05g38550.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g078810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6300.1.S1_at	A	A1TS	POPTR_0003s07230	POPTR_0003s07230 (11)	scaffold_3:8819235-8819607(+) (11)	NA	O64765	Probable UDP-N-acetylglucosamine pyrophosphorylase	AT1G31070.2	N-acetylglucosamine-1-phosphate uridylyltransferase 1 	LOC_Os08g10600.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.6303.1.S1_at	A	A1TS	POPTR_0004s12260	POPTR_0004s12260 (11)	scaffold_4:11335405-11337720(-) (11)	NA	NA	NA	AT5G08060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os01g55770.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6304.1.S1_at	A	A1TS	POPTR_0003s21190	POPTR_0003s21190 (11)	scaffold_3:19447359-19448578(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
Ptp.6305.2.A1_at	A	A1TS	POPTR_0006s00590	POPTR_0006s00590 (9)	scaffold_6:317443-317877(+) (9)	NA	Q92503	SEC14-like protein 1	AT5G47730.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g10650.1	"CRAL/TRIO domain containing protein, expressed"	Medtr2g032790.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6306.1.S1_s_at	A	A1TS	POPTR_0003s12480	POPTR_0003s12480 (11)	scaffold_3:13041842-13042957(+) (11)	NA	Q5RBB3	RNA-binding protein NOB1	AT5G41190.1	"CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g02360.1	expressed protein	Medtr4g149620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6307.1.S1_at	A	A2TS	POPTR_0019s07850	POPTR_0019s07850 (11)//POPTR_0019s07860 (9)	scaffold_19:9079909-9080398(+) (11)//scaffold_19:9088637-9089126(-) (11)	NA	O04300	"Alpha-1,4-glucan-protein synthase [UDP-forming]"	AT5G16510.2	"Alpha-1,4-glucan-protein synthase family protein "	LOC_Os04g56520.2	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr7g089260.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
Ptp.6308.1.S1_at	A	A1TS	POPTR_0011s12040	POPTR_0011s12040 (9)	scaffold_11:14831702-14831989(+) (9)	NA	NA	NA	AT4G27500.1	proton pump interactor 1 	LOC_Os08g30060.2	"proton pump interactor, putative, expressed"	Medtr2g100530.1	"proton pump interactor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6311.1.S1_s_at	A	A1TS	POPTR_0014s15910	POPTR_0014s15910 (11)	scaffold_14:12001870-12002150(+) (11)	NA	P56331	Eukaryotic translation initiation factor 1A	AT2G04520.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os06g23440.1	"eukaryotic translation initiation factor 1A, putative, expressed"	AC233577_18.1	Eukaryotic initiation factor 1A (eIF-1A) AC233577.5 84946-84143 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
Ptp.6311.2.S1_at	A	A1TS	POPTR_0002s21870	POPTR_0002s21870 (11)	scaffold_2:18563323-18563398(+) (11)	NA	P56331	Eukaryotic translation initiation factor 1A	AT2G04520.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os06g23440.1	"eukaryotic translation initiation factor 1A, putative, expressed"	AC233577_18.1	Eukaryotic initiation factor 1A (eIF-1A) AC233577.5 84946-84143 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
Ptp.6313.1.S1_s_at	A	A1TS	POPTR_0009s14130	POPTR_0009s14130 (11)	scaffold_9:11130001-11131482(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr1g143280.1	Tyrosine protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6315.1.S1_s_at	A	A1TS	POPTR_0018s10170	POPTR_0018s10170 (11)	scaffold_18:11147495-11148080(-) (11)	NA	Q28CH8	Protein YIPF6	AT2G18840.1	Integral membrane Yip1 family protein 	LOC_Os01g64760.1	"Yip1 domain containing protein, expressed"	Medtr8g128780.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6316.1.A1_at	A	A1TS	POPTR_0013s01630	POPTR_0013s01630 (10)	scaffold_13:920801-921036(-) (10)	NA	NA	NA	AT5G27830.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g37940.2	"CRP12 - Cysteine-rich family protein precursor, expressed"	Medtr1g099950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6316.2.S1_at	A	A1TS	POPTR_0005s28120	POPTR_0005s28120 (11)	scaffold_5:25480076-25480436(-) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT1G76660.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). 	LOC_Os01g01390.4	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6317.1.S1_at	A	A1TS	POPTR_0008s07410	POPTR_0008s07410 (9)	scaffold_8:4546959-4548627(+) (9)	NA	NA	NA	AT3G56130.1	biotin/lipoyl attachment domain-containing protein 	NA	NA	Medtr3g097100.1	Biotin/lipoyl attachment 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6318.1.S1_at	A	A1TS	POPTR_0014s07550	POPTR_0014s07550 (10)	scaffold_14:5671949-5672243(+) (10)	NA	Q5R4E0	Methionine adenosyltransferase 2 subunit beta	AT4G00560.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g57990.1	"methionine adenosyltransferase regulatory beta subunit-related, putative, expressed"	Medtr8g034380.1	dTDP-4-dehydrorhamnose reductase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.6319.1.S1_at	A	A1TS	POPTR_0003s11360	POPTR_0003s11360 (11)	scaffold_3:12201801-12202326(+) (11)	NA	Q50EX6	Protein ODORANT1	AT4G12350.1	myb domain protein 42 	LOC_Os09g36250.1	"MYB family transcription factor, putative, expressed"	Medtr5g085860.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6319.2.S1_a_at	A	A1TS	POPTR_0003s11360	POPTR_0003s11360 (11)	scaffold_3:12200434-12200623(+) (11)	POPTR_0001s07830 (7)	Q50EX6	Protein ODORANT1	AT4G12350.1	myb domain protein 42 	LOC_Os09g36250.1	"MYB family transcription factor, putative, expressed"	Medtr5g085860.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.632.1.A1_at	A	A1TS	POPTR_0012s06700	POPTR_0012s06700 (11)	scaffold_12:7127432-7127573(+) (11)	NA	Q9SD88	UPF0139 membrane protein At5g07960	AT5G07960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g54980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6320.1.S1_s_at	A	A2TS	POPTR_0006s19530	POPTR_0006s19540 (11)//POPTR_0006s19530 (11)	scaffold_6:18579718-18580715(+) (11)//scaffold_6:18594020-18595034(+) (11)	NA	P46287	60S ribosomal protein L11	AT5G45775.2	Ribosomal L5P family protein 	LOC_Os02g14059.1	"ribosomal protein L5, putative, expressed"	Medtr8g050250.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6320.1.S1_x_at	A	A2TS	POPTR_0006s19530	POPTR_0006s19540 (11)//POPTR_0006s19530 (11)	scaffold_6:18579336-18580455(+) (10)//scaffold_6:18593638-18594774(+) (11)	NA	P46287	60S ribosomal protein L11	AT5G45775.2	Ribosomal L5P family protein 	LOC_Os02g14059.1	"ribosomal protein L5, putative, expressed"	Medtr8g050250.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6321.1.S1_at	A	A1TS	POPTR_0010s26150	POPTR_0010s26150 (10)	scaffold_10:21479737-21480197(-) (10)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT5G08570.1	Pyruvate kinase family protein 	LOC_Os04g58110.1	"pyruvate kinase, putative, expressed"	Medtr4g115180.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.6322.2.A1_a_at	A	A1TS	POPTR_0007s11290	POPTR_0007s11290 (11)	scaffold_7:11639503-11640061(-) (11)	NA	NA	NA	AT3G50590.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os09g24260.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g097120.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6323.1.S1_s_at	A	A1TS	POPTR_0006s27020	POPTR_0006s27020 (11)	scaffold_6:25049742-25049951(+) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.6324.1.S1_at	A	A1TS	POPTR_0015s07500	POPTR_0015s07500 (11)	scaffold_15:8796685-8796847(+) (11)	NA	NA	NA	AT5G62550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). 	LOC_Os06g38960.2	expressed protein	Medtr8g112630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6326.1.S1_at	A	A1TS	POPTR_0003s15400	POPTR_0003s15400 (11)	scaffold_3:15185765-15186038(-) (11)	NA	Q8L7E3	Vacuolar-sorting receptor 7	AT1G30900.1	VACUOLAR SORTING RECEPTOR 6 	LOC_Os06g45380.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6327.1.S1_at	A	A1TS	POPTR_0001s03440	POPTR_0001s03440 (10)	scaffold_1:2782734-2783002(-) (10)	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.6328.2.S1_s_at	A	A1TS	POPTR_0011s16520	POPTR_0011s16520 (11)	scaffold_11:18399051-18399389(+) (11)	NA	P18025	Tubulin beta-1 chain	AT5G23860.2	tubulin beta 8 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.6329.1.S1_at	A	A1TS	POPTR_0001s02790	POPTR_0001s02790 (11)	scaffold_1:2189517-2190056(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6330.1.S1_s_at	A	A1TS	POPTR_0012s10420	POPTR_0012s10420 (11)	scaffold_12:11201915-11202273(+) (11)	NA	P35659	Protein DEK	AT3G48710.1	DEK domain-containing chromatin associated protein 	LOC_Os01g70020.1	"DEK C terminal domain containing protein, expressed"	Medtr3g150850.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6331.1.S1_at	A	A1MS	POPTR_0006s08340	POPTR_0006s08340 (11)	scaffold_6:6069148-6069203(-) (11)	NA	Q8GW19	CAAX prenyl protease 2	AT2G36305.1	farnesylated protein-converting enzyme 2 	LOC_Os05g28950.1	"CAAX amino terminal protease family protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
Ptp.6331.1.S1_s_at	A	A1TS	POPTR_0006s08340	POPTR_0006s08340 (11)	scaffold_6:6068965-6069697(-) (11)	NA	Q8GW19	CAAX prenyl protease 2	AT2G36305.1	farnesylated protein-converting enzyme 2 	LOC_Os05g28950.1	"CAAX amino terminal protease family protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
Ptp.6332.1.S1_at	A	A1TS	POPTR_0014s04870	POPTR_0014s04870 (10)	scaffold_14:3760544-3762743(+) (10)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.6334.1.S1_at	A	A1TS	POPTR_0006s11840	POPTR_0006s11840 (9)	scaffold_6:9034076-9034273(+) (9)	NA	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400	AT2G36570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g04230.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g073620.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.6335.2.A1_a_at	A	A1TS	POPTR_0014s06280	POPTR_0014s06280 (11)	scaffold_14:4788540-4789204(+) (11)	NA	Q9SLN5	Methionine aminopeptidase 1A	AT2G45240.1	methionine aminopeptidase 1A 	LOC_Os10g36470.2	"peptidase, M24 family protein, putative, expressed"	Medtr5g017630.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	GO:0008270|zinc ion binding	NA
Ptp.6335.2.A1_s_at	A	A1TS	POPTR_0014s06280	POPTR_0014s06280 (11)	scaffold_14:4788162-4789304(+) (11)	NA	Q9SLN5	Methionine aminopeptidase 1A	AT2G45240.1	methionine aminopeptidase 1A 	LOC_Os10g36470.2	"peptidase, M24 family protein, putative, expressed"	Medtr5g017630.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	GO:0008270|zinc ion binding	NA
Ptp.6336.1.S1_s_at	A	A1TS	POPTR_0009s06170	POPTR_0009s06170 (11)	scaffold_9:6035071-6036665(-) (11)	NA	NA	NA	AT3G52040.1	unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g16550.1	expressed protein	Medtr8g105920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6337.1.S1_s_at	A	A1TS	POPTR_0014s04380	POPTR_0014s04380 (11)	scaffold_14:3418604-3420366(-) (11)	NA	NA	NA	AT3G60210.1	GroES-like family protein 	LOC_Os10g41710.1	"chaperonin, putative, expressed"	Medtr8g009080.1	GroES-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.6339.1.S1_at	A	A1TS	POPTR_0004s21250	POPTR_0004s21250 (11)	scaffold_4:20453341-20453550(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6339.1.S1_s_at	A	A1TS	POPTR_0004s21250	POPTR_0004s21250 (11)	scaffold_4:20452996-20453289(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.634.1.S1_s_at	A	A1TS	POPTR_0007s11880	POPTR_0007s11880 (11)	scaffold_7:12238448-12238754(-) (11)	NA	Q8VZB9	60S ribosomal protein L10a-1	AT1G08360.1	Ribosomal protein L1p/L10e family 	LOC_Os01g64090.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.6340.1.S1_at	A	A1TS	POPTR_0013s15180	POPTR_0013s15180 (9)	scaffold_13:15205397-15205767(+) (9)	NA	NA	NA	AT5G58375.1	Methyltransferase-related protein 	LOC_Os11g02200.1	expressed protein	Medtr5g082910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6346.1.A1_at	A	A1TS	POPTR_0013s11060	POPTR_0013s11060 (11)	scaffold_13:11725722-11726194(+) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6346.1.A1_x_at	A	A1TS	POPTR_0013s11060	POPTR_0013s11060 (11)	scaffold_13:11725726-11726278(+) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6347.1.S1_s_at	A	A1TS	POPTR_0009s13760	POPTR_0009s13760 (11)	scaffold_9:10910222-10910279(-) (11)	NA	NA	NA	AT4G38580.1	farnesylated protein 6 	LOC_Os04g17100.1	"heavy metal-associated domain containing protein, expressed"	Medtr4g098440.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.6349.2.A1_at	A	A1MA	POPTR_0013s14860	POPTR_0013s14860 (9)	scaffold_13:14956886-14957279(+) (9)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.6351.1.S1_at	A	A1TS	POPTR_0017s08600	POPTR_0017s08600 (10)	scaffold_1108:346-548(-) (10)//scaffold_17:7215500-7215702(-) (10)	POPTR_1108s00200 (8)	Q54Z26	Serine hydroxymethyltransferase 1	AT4G13930.1	serine hydroxymethyltransferase 4 	LOC_Os12g22030.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr4g133030.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.6352.1.A1_s_at	A	A1TS	POPTR_0002s24400	POPTR_0002s24400 (11)	scaffold_2:21777180-21779221(-) (11)	NA	P49098	Cytochrome b5	AT2G32720.1	cytochrome B5 isoform B 	LOC_Os01g73990.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr4g023560.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.6355.2.S1_at	A	A1TS	POPTR_0008s06370	POPTR_0008s06370 (11)	scaffold_8:3774583-3774830(+) (11)	NA	Q9LMK0	60S ribosomal protein L35a-1	AT1G07070.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6356.1.S1_s_at	A	A1TS	POPTR_0001s12390	POPTR_0001s12390 (11)	scaffold_1:9606849-9607060(+) (11)	NA	Q0JPA6	Salt stress root protein RS1	AT4G20260.3	plasma-membrane associated cation-binding protein 1 	LOC_Os02g18410.1	"salt stress root protein RS1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6357.1.S1_s_at	A	A1TS	POPTR_0007s05050	POPTR_0007s05050 (9)	scaffold_7:3253997-3254345(+) (9)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6358.1.S1_s_at	A	A1TS	POPTR_0014s18430	POPTR_0014s18430 (11)	scaffold_14:15597522-15597817(-) (11)	NA	O82662	"Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial"	AT2G20420.1	ATP citrate lyase (ACL) family protein 	LOC_Os02g40830.1	"succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6359.1.S1_s_at	A	A1TS	POPTR_0019s00790	POPTR_0019s00790 (11)	scaffold_19:531503-531705(+) (11)	NA	Q7XQP4	Serine/threonine-protein kinase SAPK7	AT1G10940.1	Protein kinase superfamily protein 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g144500.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6360.1.S1_at	A	A1TS	POPTR_0007s06220	POPTR_0007s06220 (11)	scaffold_7:4389299-4389667(-) (11)	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6360.3.A1_at	A	A1TS	POPTR_0014s01890	POPTR_0014s01890 (11)	scaffold_14:1724747-1726007(+) (11)	NA	Q9STX1	Acyl-CoA-binding domain-containing protein 3	AT4G24230.5	acyl-CoA-binding domain 3 	LOC_Os03g14000.1	"acyl CoA binding protein, putative, expressed"	NA	NA	NA	GO:0000062|acyl-CoA binding	NA
Ptp.6361.1.S1_at	A	A1TS	POPTR_0018s14300	POPTR_0018s14300 (11)	scaffold_18:14528704-14528989(-) (11)	NA	Q6Z2W3	Auxin response factor 5	AT1G30330.1	auxin response factor 6 	LOC_Os02g04810.1	"auxin response factor 5, putative, expressed"	Medtr4g161090.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.6361.1.S1_s_at	A	A1TS	POPTR_0018s14300	POPTR_0018s14300 (11)	scaffold_18:14528563-14528866(-) (11)	NA	Q6Z2W3	Auxin response factor 5	AT1G30330.1	auxin response factor 6 	LOC_Os02g04810.1	"auxin response factor 5, putative, expressed"	Medtr4g161090.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.6362.1.S1_s_at	A	A1TS	POPTR_0014s15640	POPTR_0014s15640 (11)	scaffold_14:11661581-11662937(+) (11)	NA	NA	NA	AT2G32970.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. 	LOC_Os02g53210.4	expressed protein	Medtr3g109930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6363.3.S1_at	A	A1TA	POPTR_0001s04270	POPTR_0001s04270 (11)	scaffold_1:3375337-3375645(+) (11)	POPTR_0003s21170 (7)	NA	NA	AT4G08810.1	calcium ion binding 	LOC_Os07g43990.1	expressed protein	Medtr4g134130.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6364.1.S1_at	A	A1TS	POPTR_0004s05860	POPTR_0004s05860 (11)	scaffold_4:4588868-4589111(-) (11)	NA	NA	NA	AT2G42760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). 	LOC_Os06g35770.1	expressed protein	Medtr4g135240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6365.1.S1_at	A	A1TS	POPTR_0008s09390	POPTR_0008s09390 (11)	scaffold_8:5817078-5817159(+) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT3G29360.2	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25700.3	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr5g046790.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.6366.1.S1_s_at	A	A1TS	POPTR_0001s22780	POPTR_0001s22780 (11)	scaffold_1:21673357-21673746(+) (11)	NA	Q99020	Heterogeneous nuclear ribonucleoprotein A/B	AT2G41060.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g16090.1	"RNA binding protein, putative, expressed"	Medtr5g095270.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6367.1.S1_s_at	A	A1TS	POPTR_0002s14110	POPTR_0002s14110 (11)	scaffold_2:10459174-10459391(-) (11)	NA	Q76E23	Eukaryotic translation initiation factor 4G	AT3G60240.3	eukaryotic translation initiation factor 4G 	LOC_Os07g36940.2	"eukaryotic translation initiation factor 4G, putative, expressed"	Medtr8g008440.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
Ptp.6368.1.S1_at	A	A1TS	POPTR_0014s13810	POPTR_0014s13810 (11)	scaffold_14:10101760-10105991(-) (11)	NA	O96622	Actin-related protein 2/3 complex subunit 1	AT2G30910.3	actin-related protein C1A 	LOC_Os02g57220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g064430.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.637.1.S1_at	A	A1TS	POPTR_0001s11230	POPTR_0001s11230 (11)	scaffold_1:8712052-8712536(+) (11)	NA	O82486	N6-adenosine-methyltransferase MT-A70-like	AT4G10760.1	mRNAadenosine methylase 	LOC_Os02g45110.1	"MT-A70 domain containing protein, expressed"	Medtr4g158130.1	MT-A70 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008168|methyltransferase activity	NA
Ptp.6370.3.S1_a_at	A	A1TS	POPTR_0010s20710	POPTR_0010s20710 (11)	scaffold_10:18186187-18186672(-) (11)	NA	Q9VD44	Poly(A) RNA polymerase gld-2 homolog A	AT2G39740.1	Nucleotidyltransferase family protein 	LOC_Os01g62790.1	expressed protein	Medtr2g134890.1	PAP/25A-associated 	NA	GO:0016779|nucleotidyltransferase activity	NA
Ptp.6371.1.S1_at	A	A1TS	POPTR_0001s07710	POPTR_0001s07710 (11)	scaffold_1:5841777-5842448(-) (11)	NA	P49042	Vacuolar-processing enzyme	AT1G62710.1	beta vacuolar processing enzyme 	LOC_Os02g43010.1	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr8g106310.3	"Peptidase C13, legumain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6372.1.S1_at	A	A1TS	POPTR_0001s19370	POPTR_0001s19370 (10)	scaffold_1:17018511-17021342(+) (10)	NA	NA	NA	AT1G15370.1	SNARE-like superfamily protein 	LOC_Os03g63910.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g126320.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6373.1.S1_s_at	A	A1TS	POPTR_0013s01370	POPTR_0013s01370 (11)	scaffold_13:786835-787257(+) (11)	NA	Q0WRB2	Probable protein phosphatase 2C 73	AT5G27930.2	Protein phosphatase 2C family protein 	LOC_Os05g29030.2	"protein phosphatase 2C, putative, expressed"	Medtr7g138290.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6374.1.S1_a_at	A	A1TS	POPTR_0001s28090	POPTR_0001s28090 (11)	scaffold_1:26882213-26883131(-) (11)	NA	P34893	10 kDa chaperonin	AT1G14980.1	chaperonin 10 	LOC_Os03g25050.1	"chaperonin, putative, expressed"	AC225518_13.1	GroES-like AC225518.12 38278-37581 E EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.6375.1.S1_s_at	A	A1TS	POPTR_0005s21110	POPTR_0005s21110 (11)	scaffold_5:20247301-20248038(-) (11)	POPTR_0002s07170 (6)	C0LGV1	LRR receptor-like serine/threonine-protein kinase RCH1	AT5G48940.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os04g04330.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g124960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.6376.1.S1_s_at	A	A1TS	POPTR_0010s14710	POPTR_0010s14710 (11)	scaffold_10:14224103-14225410(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G13635.2	DNA glycosylase superfamily protein 	LOC_Os08g38170.1	"methyladenine glycosylase, putative, expressed"	Medtr8g077310.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
Ptp.6378.1.S1_at	A	A1TS	POPTR_0007s11920	POPTR_0007s11920 (11)	scaffold_7:12266378-12266852(-) (11)	NA	P49082	Guanine nucleotide-binding protein alpha-1 subunit	AT2G23460.1	extra-large G-protein 1 	LOC_Os12g40190.1	"G-protein alpha subunit, putative, expressed"	Medtr5g018540.2	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
Ptp.6379.1.S1_at	A	A1TS	POPTR_0007s12370	POPTR_0007s12370 (11)	scaffold_7:12697796-12697864(+) (11)	NA	Q94A43	BES1/BZR1 homolog protein 2	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6379.1.S1_s_at	A	A1TS	POPTR_0007s12370	POPTR_0007s12370 (11)	scaffold_7:12698035-12698130(+) (11)	NA	Q94A43	BES1/BZR1 homolog protein 2	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.638.1.S1_at	A	A1TS	POPTR_0010s20330	POPTR_0010s20330 (10)	scaffold_10:17983066-17983358(+) (10)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G05940.1	ROP guanine nucleotide exchange factor 5 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr3g092590.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
Ptp.6380.1.S1_at	A	A1TS	POPTR_0004s11620	POPTR_0004s11620 (9)	scaffold_4:10400819-10401283(-) (9)	NA	Q9LFW3	COBRA-like protein 4	AT5G15630.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os03g30250.1	"COBRA-like protein precursor, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6381.1.S1_s_at	A	A1TS	POPTR_0004s16420	POPTR_0004s16420 (11)	scaffold_4:16871915-16872985(-) (11)	NA	O48670	Protein RER1A	AT4G39220.1	Rer1 family protein 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
Ptp.6382.1.S1_at	A	A1TS	POPTR_0008s06240	POPTR_0008s06240 (11)	scaffold_8:3676003-3679011(+) (11)	NA	Q8BZI6	Uncharacterized protein C22orf13 homolog	AT5G05930.1	guanylyl cyclase 1 	LOC_Os05g37950.1	"guanylyl cyclase, putative, expressed"	Medtr3g092620.1	"Uncharacterized protein C22orf13 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6383.1.S1_a_at	A	A5TS	POPTR_0019s12450	POPTR_0019s12450 (11)//POPTR_0086s00220 (10)//POPTR_0144s00200 (10)//POPTR_0086s00260 (10)//POPTR_0104s00220 (10)	scaffold_104:25864-26168(-) (11)//scaffold_144:1842-2146(+) (11)//scaffold_19:13509814-13510118(-) (11)//scaffold_86:21926-22230(+) (11)//scaffold_86:42008-50315(+) (11)	POPTR_0086s00240 (7)	Q9SEU8	"Thioredoxin M2, chloroplastic"	AT4G03520.1	Thioredoxin superfamily protein 	LOC_Os02g42700.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.6384.1.S1_a_at	A	A1TS	POPTR_0002s12560	POPTR_0002s12560 (11)	scaffold_2:9350711-9350874(+) (11)	NA	Q6X7J9	WUSCHEL-related homeobox 4	AT1G46480.1	WUSCHEL related homeobox 4 	LOC_Os04g55590.1	"homeobox domain containing protein, expressed"	Medtr1g024140.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6384.2.S1_at	A	A1TS	POPTR_0002s12560	POPTR_0002s12560 (11)	scaffold_2:9350951-9351126(+) (11)	NA	Q6X7J9	WUSCHEL-related homeobox 4	AT1G46480.1	WUSCHEL related homeobox 4 	LOC_Os04g55590.1	"homeobox domain containing protein, expressed"	Medtr1g024140.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6386.1.S1_at	A	A1TS	POPTR_0007s05120	POPTR_0007s05120 (11)	scaffold_7:3313699-3314113(-) (11)	NA	Q40522	Ras-related protein Rab11D	AT5G65270.1	RAB GTPase homolog A4A 	LOC_Os10g23100.1	"ras-related protein, putative, expressed"	Medtr3g101960.1	Ras GTPase; 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6387.1.S1_s_at	A	A1TS	POPTR_0010s11830	POPTR_0010s11830 (9)	scaffold_10:11973826-11973872(-) (9)	NA	NA	NA	AT5G17190.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g50210.1	"erwinia induced protein 2, putative, expressed"	Medtr4g157430.1	"Erwinia induced protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6388.1.S1_at	A	A1TS	POPTR_0001s04500	POPTR_0001s04500 (11)	scaffold_1:3534786-3535252(-) (11)	NA	Q07100	Serine/threonine-protein phosphatase PP2A-4 catalytic subunit	AT2G42500.1	protein phosphatase 2A-3 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	Medtr4g133950.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.6389.1.A1_s_at	A	A1TS	POPTR_0005s17170	POPTR_0005s17170 (11)	scaffold_5:14327968-14328168(+) (11)	NA	Q9D2H9	Leucine-rich repeat-containing protein 50	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.6389.2.S1_at	A	A1TS	POPTR_0005s17170	POPTR_0005s17170 (11)	scaffold_5:14326892-14327440(+) (11)	NA	Q9D2H9	Leucine-rich repeat-containing protein 50	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.639.1.S1_at	A	A1TS	POPTR_0013s08220	POPTR_0013s08220 (11)	scaffold_13:7253283-7255644(+) (11)	NA	P53665	"Acyl carrier protein, mitochondrial"	AT1G65290.1	mitochondrial acyl carrier protein 2 	LOC_Os03g22950.1	"acyl carrier protein, putative, expressed"	Medtr7g090000.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
Ptp.6390.1.S1_s_at	A	A1TS	POPTR_0014s10420	POPTR_0014s10420 (9)	scaffold_14:7795123-7795541(-) (9)	NA	NA	NA	AT4G01575.1	"serine protease inhibitor, Kazal-type family protein "	LOC_Os01g59610.1	"KAZ1 - Kazal-type serine protease inhibitor precursor, expressed"	Medtr3g122130.1	"serine protease inhibitor, Kazal-type family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6391.1.S1_s_at	A	A1TS	POPTR_0001s23950	POPTR_0001s23950 (11)	scaffold_1:23332063-23332195(-) (11)	NA	NA	NA	AT3G13510.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6392.1.S1_at	A	A1TS	POPTR_0009s08180	POPTR_0009s08180 (11)	scaffold_9:7531047-7532016(+) (11)	NA	NA	NA	AT5G09570.1	Cox19-like CHCH family protein 	LOC_Os03g48080.1	"CHCH domain containing protein, expressed"	Medtr4g121310.2	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6392.1.S1_x_at	A	A1TS	POPTR_0009s08180	POPTR_0009s08180 (11)	scaffold_9:7531047-7532016(+) (11)	NA	NA	NA	AT5G09570.1	Cox19-like CHCH family protein 	LOC_Os03g48080.1	"CHCH domain containing protein, expressed"	Medtr4g121310.2	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6393.1.S1_at	A	A1TS	POPTR_0017s12760	POPTR_0017s12760 (11)	scaffold_17:12927952-12929063(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT3G29360.2	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25690.1	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.6395.1.S1_at	A	A1TS	POPTR_0014s15870	POPTR_0014s15870 (11)	scaffold_14:11957329-11957402(-) (11)	NA	Q84JU4	Protein-tyrosine-phosphatase IBR5	AT2G04550.1	indole-3-butyric acid response 5 	LOC_Os06g20340.1	"dual specificity protein phosphatase, putative, expressed"	Medtr5g092050.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.6396.1.S1_at	A	A1TS	POPTR_0009s12750	POPTR_0009s12750 (9)	scaffold_9:10360569-10360702(+) (9)	NA	NA	NA	AT4G34700.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os06g50000.1	"LYR motif containing protein, putative, expressed"	Medtr3g163080.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6396.1.S1_s_at	A	A1TS	POPTR_0009s12750	POPTR_0009s12750 (11)	scaffold_9:10360475-10360945(+) (11)	NA	NA	NA	AT4G34700.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os06g50000.1	"LYR motif containing protein, putative, expressed"	Medtr3g163080.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6397.1.A1_at	A	A1TS	POPTR_0005s04160	POPTR_0005s04160 (11)	scaffold_5:2765928-2766502(-) (11)	NA	Q9C7T4	Transcription factor bHLH96	AT1G72210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g08930.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr1g099080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.6399.1.S1_at	A	A1TS	POPTR_0001s18260	POPTR_0001s18260 (9)	scaffold_1:15334232-15334271(+) (9)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.6399.1.S1_s_at	A	A1TS	POPTR_0001s18260	POPTR_0001s18260 (11)	scaffold_1:15334272-15334642(+) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.64.1.S1_s_at	A	A1TS	POPTR_0001s15900	POPTR_0001s15900 (11)	scaffold_1:12733917-12734272(-) (11)	NA	Q9S7J8	Copper-transporting ATPase RAN1	AT5G44790.1	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) 	LOC_Os02g07630.1	"copper-transporting ATPase, putative, expressed"	Medtr4g089740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
Ptp.640.1.S1_s_at	A	A1TS	POPTR_0006s14520	POPTR_0006s14520 (11)	scaffold_6:11860897-11861295(-) (11)	NA	Q9FEW9	12-oxophytodienoate reductase 3	AT2G06050.3	oxophytodienoate-reductase 3 	LOC_Os08g35740.2	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006840.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.640.2.S1_s_at	A	A2TS	POPTR_0004s22180	POPTR_0004s22180 (11)//POPTR_0006s14520 (10)	scaffold_4:21118723-21118962(-) (11)//scaffold_6:11862337-11863722(-) (10)	NA	Q9FEW9	12-oxophytodienoate reductase 3	AT2G06050.3	oxophytodienoate-reductase 3 	LOC_Os08g35740.1	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006830.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.6402.1.A1_at	A	A1TS	POPTR_0011s17230	POPTR_0011s17230 (9)	scaffold_11:18819365-18819746(-) (9)	NA	Q9FG77	Probable WRKY transcription factor 2	AT5G56270.1	WRKY DNA-binding protein 2 	LOC_Os08g38990.4	"OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6402.1.A1_s_at	A	A1TS	POPTR_0011s17230	POPTR_0011s17230 (11)	scaffold_11:18819514-18819717(-) (11)	NA	Q9FG77	Probable WRKY transcription factor 2	AT5G56270.1	WRKY DNA-binding protein 2 	LOC_Os08g38990.4	"OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6404.1.S1_at	A	A1TS	POPTR_0001s34940	POPTR_0001s34940 (11)	scaffold_1:33193114-33193744(+) (11)	NA	NA	NA	AT3G01510.1	like SEX4 1 	LOC_Os08g29160.1	"5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.6405.1.S1_s_at	A	A1TS	POPTR_0010s19000	POPTR_0010s19000 (11)	scaffold_10:17055594-17056012(+) (11)	NA	NA	NA	AT5G05365.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g61070.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g091130.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.6407.1.S1_at	A	A1TS	POPTR_0002s07090	POPTR_0002s07090 (10)	scaffold_2:4822544-4823632(-) (10)	NA	NA	NA	AT1G21320.2	nucleotide binding;nucleic acid binding 	LOC_Os06g03690.2	"RNA recognition motif containing protein, putative, expressed"	AC231338_10.1	RNA-binding region RNP-1 (RNA recognition motif) AC231338.1 40539-47571 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
Ptp.641.1.S1_s_at	A	A1TS	POPTR_0001s22320	POPTR_0001s22320 (11)	scaffold_1:20933250-20934956(+) (11)	POPTR_0009s02200 (6)	Q9SJF0	Serine/threonine-protein phosphatase BSL2	AT1G08420.1	BRI1 suppressor 1 (BSU1)-like 2 	LOC_Os12g42310.1	"serine/threonine-protein phosphatase BSL2, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.6410.1.S1_at	A	A1TS	POPTR_0018s13090	POPTR_0018s13090 (11)	scaffold_18:13540182-13541425(-) (11)	NA	B2G8V5	50S ribosomal protein L36	AT5G20180.2	Ribosomal protein L36 	LOC_Os03g59720.1	"ribosomal protein L36 containing protein, expressed"	Medtr8g120480.1	Ribosomal protein L36 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6411.1.S1_a_at	A	A1TS	POPTR_0010s19770	POPTR_0010s19770 (11)	scaffold_10:17595154-17595443(-) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6411.2.S1_a_at	A	A1TS	POPTR_0010s19770	POPTR_0010s19770 (11)	scaffold_10:17595235-17595443(-) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6413.1.S1_s_at	A	A1TS	POPTR_0018s03920	POPTR_0018s03920 (11)	scaffold_18:3338175-3339854(-) (11)	NA	NA	NA	AT4G31340.1	myosin heavy chain-related 	LOC_Os08g40790.1	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6414.1.S1_at	A	A1TS	POPTR_0009s15100	POPTR_0009s15100 (11)	scaffold_9:11710876-11711099(+) (11)	NA	Q9SGD6	"Arogenate dehydratase/prephenate dehydratase 6, chloroplastic"	AT1G08250.1	arogenate dehydratase 6 	LOC_Os04g33390.1	"prephenate dehydratase domain containing protein, expressed"	Medtr4g073340.1	Prephenate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process	GO:0004664|prephenate dehydratase activity	NA
Ptp.6417.1.S1_s_at	A	A2TS	POPTR_0016s11750	POPTR_0016s11750 (11)//POPTR_0588s00200 (11)	scaffold_16:10931672-10932126(-) (11)//scaffold_588:12524-12978(-) (11)	NA	Q9M392	Reticulon-like protein B12	AT3G54120.1	Reticulon family protein 	LOC_Os01g63240.1	"reticulon domain containing protein, putative, expressed"	Medtr4g012120.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.6418.2.S1_a_at	A	A1TS	POPTR_0002s25100	POPTR_0002s25100 (11)	scaffold_2:22302440-22302743(-) (11)	NA	P19892	Ras-related protein ARA-1	AT1G05810.1	RAB GTPase homolog A5E 	LOC_Os08g41340.1	"ras-related protein, putative, expressed"	Medtr7g046180.1	"Ras-related protein ARA-1, putative "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.642.1.S1_x_at	A	A2TS	POPTR_0004s06190	POPTR_0004s06190 (11)//POPTR_1064s00200 (11)	scaffold_1064:3868-4266(-) (11)//scaffold_4:4917645-4918041(+) (11)	NA	P51418	60S ribosomal protein L18a-2	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6420.1.S1_at	A	A1TS	POPTR_0002s23290	POPTR_0002s23290 (11)	scaffold_2:20746296-20746775(-) (11)	NA	Q9SEE4	Pirin-like protein	AT2G43120.1	RmlC-like cupins superfamily protein 	LOC_Os03g62790.1	"pirin, putative, expressed"	Medtr5g101700.1	"Pirin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6421.1.S1_at	A	A1TS	POPTR_0014s08210	POPTR_0014s08210 (11)	scaffold_14:6092461-6093328(+) (11)	NA	P32260	"Cysteine synthase, chloroplastic/chromoplastic"	AT3G61440.1	cysteine synthase C1 	LOC_Os04g08350.2	"cysteine synthase, chloroplast/chromoplast precursor, putative, expressed"	Medtr7g087780.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.6422.1.A1_s_at	A	A1TS	POPTR_0006s08630	POPTR_0006s08630 (11)	scaffold_6:6311646-6312106(-) (11)	NA	O80932	Expansin-A3	AT2G37640.1	Barwin-like endoglucanases superfamily protein 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6423.1.S1_at	A	A1TS	POPTR_0010s12680	POPTR_0010s12680 (11)	scaffold_10:12673804-12674552(-) (11)	NA	P17614	"ATP synthase subunit beta, mitochondrial"	AT5G08680.1	ATP synthase alpha/beta family protein 	LOC_Os01g49190.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.6423.1.S1_s_at	A	A2TS	POPTR_0008s12550	POPTR_0010s12680 (11)//POPTR_0008s12550 (11)	scaffold_10:12674159-12674525(-) (11)//scaffold_8:8133367-8133727(+) (11)	NA	P17614	"ATP synthase subunit beta, mitochondrial"	AT5G08680.1	ATP synthase alpha/beta family protein 	LOC_Os01g49190.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.6424.1.S1_at	A	A1TS	POPTR_0003s17680	POPTR_0003s17680 (11)	scaffold_3:16983859-16984396(-) (11)	NA	NA	NA	AT3G24160.1	putative type 1 membrane protein 	LOC_Os08g45220.1	expressed protein	Medtr2g130050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6426.1.A1_at	A	A1TS	POPTR_0014s11730	POPTR_0014s11730 (11)	scaffold_14:8702030-8702144(+) (11)	NA	Q94KD8	Probable beta-D-xylosidase 2	AT1G02640.1	beta-xylosidase 2 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6427.1.S1_at	A	A1TS	POPTR_0002s08940	POPTR_0002s08940 (11)	scaffold_2:6319709-6319901(-) (11)	NA	NA	NA	AT4G08460.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.1	expressed protein	Medtr3g098400.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6428.1.S1_at	A	A1TS	POPTR_0003s11220	POPTR_0003s11220 (9)	scaffold_3:12070857-12071309(+) (9)	NA	Q9SU40	Monocopper oxidase-like protein SKU5	AT4G12420.2	Cupredoxin superfamily protein 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.6429.1.S1_at	A	A1TS	POPTR_0004s01030	POPTR_0004s01030 (11)	scaffold_4:509824-510066(-) (11)	NA	P54260	"Aminomethyltransferase, mitochondrial"	AT1G11860.3	Glycine cleavage T-protein family 	LOC_Os04g53230.1	"aminomethyltransferase, putative, expressed"	Medtr8g147030.1	Glycine cleavage system T protein 	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
Ptp.6429.1.S1_s_at	A	A2TS	POPTR_0004s01030	POPTR_0021s00380 (11)//POPTR_0004s01030 (11)	scaffold_21:117228-117690(-) (11)//scaffold_4:509806-510268(-) (11)	NA	P54260	"Aminomethyltransferase, mitochondrial"	AT1G11860.3	Glycine cleavage T-protein family 	LOC_Os04g53230.1	"aminomethyltransferase, putative, expressed"	Medtr8g147030.1	Glycine cleavage system T protein 	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
Ptp.6430.1.S1_at	A	A1TS	POPTR_0010s07420	POPTR_0010s07420 (11)	scaffold_10:8478685-8480266(+) (11)	NA	Q12486	Putative uncharacterized hydrolase YOR131C	AT2G33255.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os02g57100.1	expressed protein	Medtr1g087430.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6433.1.S1_s_at	A	A1TS	POPTR_0018s08770	POPTR_0018s08770 (9)	scaffold_18:9692985-9693167(-) (9)	NA	O22025	Protein cfxQ homolog	AT3G24530.1	AAA-type ATPase family protein / ankyrin repeat family protein 	LOC_Os02g16660.1	"cbxX, chromosomal, putative, expressed"	Medtr5g026960.1	Ankyrin 	NA	GO:0005524|ATP binding	NA
Ptp.6434.1.S1_s_at	A	A1TS	POPTR_0013s11870	POPTR_0013s11870 (11)	scaffold_13:12497177-12497439(-) (11)	POPTR_0019s11470 (7)	O66119	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AT1G34430.1	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os12g08170.1	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	AC233660_8.1	Biotin/lipoyl attachment; Dihydrolipoamide succinyltransferase AC233660.2 38835-37267 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
Ptp.6435.1.S1_at	A	A1TS	POPTR_0009s06890	POPTR_0009s06890 (11)	scaffold_9:6560360-6561174(-) (11)	NA	P74516	Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase slr0992	AT5G26880.2	AGAMOUS-like 26 	LOC_Os08g39600.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr3g030550.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.6435.1.S1_s_at	A	A1TS	POPTR_0009s06890	POPTR_0009s06890 (11)	scaffold_9:6560724-6561152(-) (11)	NA	P74516	Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase slr0992	AT5G26880.2	AGAMOUS-like 26 	LOC_Os08g39600.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr3g030550.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.6436.1.S1_a_at	A	A1TS	POPTR_0007s12350	POPTR_0007s12350 (11)	scaffold_7:12676284-12676599(+) (11)	NA	Q9SDY5	NEDD8-conjugating enzyme Ubc12	AT4G36800.2	RUB1 conjugating enzyme 1 	LOC_Os10g11260.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6437.1.S1_s_at	A	A1TS	POPTR_0004s16090	POPTR_0004s16090 (11)	scaffold_4:16542377-16542910(+) (11)	NA	Q0WW26	Coatomer subunit gamma	AT4G34450.1	"coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative "	LOC_Os07g10150.1	"coatomer subunit gamma-2, putative, expressed"	Medtr3g159510.1	"Adaptin, N-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; ; "	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat||GO:0005798|Golgi-associated vesicle
Ptp.6439.1.S1_at	A	A1TS	POPTR_0005s02030	POPTR_0005s02030 (11)	scaffold_5:1323080-1323820(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
Ptp.6439.1.S1_s_at	A	A2TS	POPTR_0005s02030	POPTR_0013s01220 (11)//POPTR_0005s02030 (11)	scaffold_13:670517-670937(+) (11)//scaffold_5:1323346-1323776(+) (10)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
Ptp.644.1.S1_at	A	A1TS	POPTR_0003s09950	POPTR_0003s09950 (11)	scaffold_3:11100388-11100960(-) (11)	NA	P52581	Isoflavone reductase homolog	AT1G32100.1	pinoresinol reductase 1 	LOC_Os12g16410.1	"isoflavone reductase, putative, expressed"	Medtr5g027470.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.6440.1.S1_at	A	A1TS	POPTR_0015s14390	POPTR_0015s14390 (9)	scaffold_15:14009179-14009843(-) (9)	NA	P54397	39 kDa FK506-binding nuclear protein	AT4G25340.1	FK506 BINDING PROTEIN 53 	LOC_Os04g36890.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g008740.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.6442.1.S1_at	A	A1TS	POPTR_0001s00440	POPTR_0001s00440 (11)	scaffold_1:337698-337990(-) (11)	NA	P22988	L-lactate dehydrogenase A	AT4G17260.1	Lactate/malate dehydrogenase family protein 	LOC_Os02g01510.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g012480.1	L-lactate/malate dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.6445.1.A1_at	A	A1TS	POPTR_0006s09170	POPTR_0006s09170 (11)	scaffold_6:6771534-6772081(+) (11)	NA	Q8W487	"Uncharacterized protein At2g39795, mitochondrial"	AT5G02050.1	Mitochondrial glycoprotein family protein 	LOC_Os01g05010.1	"mitochondrial glycoprotein, putative, expressed"	Medtr5g088110.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
Ptp.6447.1.S1_s_at	A	A1TS	POPTR_0006s09130	POPTR_0006s09130 (11)	scaffold_6:6752589-6753091(+) (11)	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os08g13930.2	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.6448.1.S1_at	A	A1TS	POPTR_0001s09230	POPTR_0001s09230 (11)	scaffold_1:7069755-7070902(-) (11)	NA	P30711	Glutathione S-transferase theta-1	AT5G41240.1	glutathione S-transferase THETA 2 	LOC_Os11g37730.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr4g149550.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.645.1.S1_s_at	A	A1TS	POPTR_0004s21190	POPTR_0004s21190 (9)	scaffold_4:20422639-20423034(-) (9)	NA	Q9ZUX4	"Uncharacterized protein At2g27730, mitochondrial"	AT2G27730.1	copper ion binding 	LOC_Os09g39550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6450.1.S1_at	A	A1TS	POPTR_0002s12930	POPTR_0002s12930 (11)	scaffold_2:9611109-9611618(+) (11)	NA	NA	NA	AT1G47410.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages. 	NA	NA	Medtr1g024830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6452.1.S1_at	A	A1MS	POPTR_0003s10090	POPTR_0003s10090 (11)	scaffold_3:11205280-11205395(-) (11)	NA	Q6Z8C8	Cyclin-dependent kinase F-4	AT4G19110.1	Protein kinase superfamily protein 	LOC_Os06g02550.2	"CPuORF21 - conserved peptide uORF-containing transcript, expressed"	Medtr5g027190.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6453.1.A1_at	A	A1TS	POPTR_0011s00610	POPTR_0011s00610 (11)	scaffold_11:287706-288265(+) (11)	NA	Q06942	"Naringenin,2-oxoglutarate 3-dioxygenase"	AT4G16330.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g06720.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g094020.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6455.1.S1_at	A	A1TS	POPTR_0004s20750	POPTR_0004s20750 (11)	scaffold_4:20178138-20179447(+) (11)	NA	NA	NA	AT5G21070.1	unknown protein; Has 115 Blast hits to 115 proteins in 34 species: Archae - 1; Bacteria - 36; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os01g17020.1	"glycosyl hydrolases family 17 protein, putative, expressed"	Medtr5g094810.1	"Glycosyl hydrolases family 17 protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6456.1.S1_at	A	A1TS	POPTR_0014s11610	POPTR_0014s11610 (10)	scaffold_14:8609152-8610319(+) (10)	NA	P43299	Protein PROLIFERA	AT4G02060.2	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os12g37400.1	"MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed"	Medtr7g132920.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
Ptp.6458.1.S1_at	A	A1TS	POPTR_0018s06200	POPTR_0018s06200 (9)	scaffold_18:5929927-5930300(+) (9)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT3G24440.1	Fibronectin type III domain-containing protein 	LOC_Os12g34850.1	"Fibronectin type III domain containing protein, expressed"	Medtr5g075380.1	"Protein VERNALIZATION INSENSITIVE 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6459.1.S1_at	A	A1TS	POPTR_0006s05840	POPTR_0006s05840 (11)	scaffold_6:4109837-4113809(-) (11)	NA	NA	NA	AT2G42210.2	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os02g48610.2	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr7g111560.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.6460.2.A1_at	A	A1MS	POPTR_0008s11990	POPTR_0008s11990 (11)	scaffold_8:7731471-7731806(-) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6461.2.A1_at	A	A1TS	POPTR_0002s12500	POPTR_0002s12500 (11)	scaffold_2:9275246-9276027(-) (11)	NA	O95239	Chromosome-associated kinesin KIF4A	AT5G47820.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g147320.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.6462.1.S1_s_at	A	A1TS	POPTR_0002s14740	POPTR_0002s14740 (11)	scaffold_2:10943839-10945303(+) (11)	NA	P05466	"3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic"	AT2G45300.1	"RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta "	LOC_Os06g04280.1	"3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed"	Medtr4g025530.1	3-phosphoshikimate 1-carboxyvinyltransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
Ptp.6464.1.S1_s_at	A	A1TS	POPTR_0003s07470	POPTR_0003s07470 (11)	scaffold_3:9022112-9022749(-) (11)	NA	P40855	Peroxisomal biogenesis factor 19	AT3G03490.1	peroxin 19-1 	LOC_Os02g44220.1	"peroxisomal biogenesis factor 19, putative, expressed"	Medtr8g105760.1	Pex19 protein 	NA	NA	GO:0005777|peroxisome
Ptp.6466.1.S1_s_at	A	A1TS	POPTR_0007s12170	POPTR_0007s12170 (11)	scaffold_7:12482941-12485542(-) (11)	NA	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.2	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6467.1.S1_s_at	A	A1TS	POPTR_0003s14580	POPTR_0003s14580 (11)	scaffold_3:14614130-14615568(-) (11)	NA	O17606	UPF0160 protein C27H6.8	AT5G41970.1	Metal-dependent protein hydrolase 	LOC_Os02g46150.1	"GAMM1 protein-like, putative, expressed"	Medtr3g123380.1	Metal-dependent protein hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6468.1.S1_at	A	A1TS	POPTR_0014s14710	POPTR_0014s14710 (10)	scaffold_14:10788770-10789188(+) (10)	NA	Q55CX9	Probable importin-7 homolog	AT2G31660.1	ARM repeat superfamily protein 	LOC_Os04g26841.1	"importin-8, putative"	Medtr7g021300.1	Armadillo-like helical 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
Ptp.6469.1.S1_at	A	A1TS	POPTR_0002s11110	POPTR_0002s11110 (11)	scaffold_2:8139631-8140494(+) (11)	NA	Q8GY23	E3 ubiquitin-protein ligase UPL1	AT1G55860.1	ubiquitin-protein ligase 1 	LOC_Os12g24080.1	"HECT-domain domain containing protein, expressed"	Medtr5g075640.1	"HECT; Ubiquitin interacting motif; UBA-like; DUF913, E3 ubiquitin ligase TOM1; "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
Ptp.647.1.S1_at	A	A1TS	POPTR_0005s02330	POPTR_0005s02330 (11)	scaffold_5:1515479-1516353(-) (11)	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os03g22180.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6470.1.S1_at	A	A1TS	POPTR_0004s07350	POPTR_0004s07350 (10)	scaffold_4:6069605-6070117(+) (10)	NA	Q42521	Glutamate decarboxylase 1	AT5G17330.1	glutamate decarboxylase 	LOC_Os03g51080.1	"glutamate decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.6472.1.S1_s_at	A	A1TS	POPTR_0011s11320	POPTR_0011s11320 (11)	scaffold_11:14044630-14044919(+) (11)	NA	Q46948	Protein thiJ	AT1G53280.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os06g34040.1	"DJ-1 family protein, putative, expressed"	Medtr4g129930.1	ThiJ/PfpI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6473.1.S1_s_at	A	A1TS	POPTR_0004s17530	POPTR_0004s17530 (11)	scaffold_4:17692549-17693412(-) (11)	NA	Q9M4S8	"Triosephosphate isomerase, chloroplastic"	AT2G21170.1	triosephosphate isomerase 	LOC_Os09g36450.1	"triosephosphate isomerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.6473.2.S1_s_at	A	A1TS	POPTR_0004s07270	POPTR_0004s07270 (11)	scaffold_4:5989149-5989689(-) (11)	NA	Q6R0H1	Protein LHY	AT5G17300.1	Homeodomain-like superfamily protein 	LOC_Os04g49450.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6474.1.S1_at	A	A1TS	POPTR_0006s24500	POPTR_0006s24500 (10)	scaffold_6:23085636-23086182(-) (11)	NA	NA	NA	AT5G11890.1	FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g39290.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr3g139940.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
Ptp.6475.1.S1_at	A	A1TS	POPTR_1740s00200	POPTR_1740s00200 (11)	scaffold_1740:697-1225(+) (11)	NA	Q8W487	"Uncharacterized protein At2g39795, mitochondrial"	AT2G39795.1	Mitochondrial glycoprotein family protein 	LOC_Os01g05010.1	"mitochondrial glycoprotein, putative, expressed"	Medtr5g088110.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
Ptp.6476.3.S1_s_at	A	A1TS	POPTR_0019s15200	POPTR_0019s15200 (11)	scaffold_19:15766355-15769061(-) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT5G41700.5	ubiquitin conjugating enzyme 8 	LOC_Os06g30970.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6477.1.A1_at	A	A1TS	POPTR_0001s38500	POPTR_0001s38500 (9)	scaffold_1:37658987-37659367(+) (10)	NA	P51281	Uncharacterized protein ycf45	AT1G73170.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g06190.1	"uncharacterized protein ycf45, putative, expressed"	AC233660_32.1	"AAA ATPase, central region AC233660.2 122587-125547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6478.1.S1_at	A	A1TS	POPTR_0016s12670	POPTR_0016s12670 (11)	scaffold_16:12041429-12042955(+) (11)	NA	Q8H7F6	"Monothiol glutaredoxin-S16, chloroplastic"	AT2G38270.1	CAX-interacting protein 2 	LOC_Os12g07650.1	"OsGrx_S16 - glutaredoxin subgroup II, expressed"	AC233100_71.1	Glutaredoxin-related protein; Thioredoxin-like fold AC233100.6 316188-320499 F EGN_Mt090430 200	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.6481.1.S1_s_at	A	A1TS	POPTR_0014s17540	POPTR_0014s17540 (11)	scaffold_14:13786249-13786597(-) (11)	NA	NA	NA	AT3G07480.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os09g33950.1	"ferredoxin 1-like isoform 1, putative, expressed"	Medtr7g046710.1	2Fe-2S Ferredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6482.1.S1_s_at	A	A1TS	POPTR_0002s09330	POPTR_0002s09330 (11)	scaffold_2:6625823-6626124(-) (11)	NA	P78820	Acetyl-CoA carboxylase	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
Ptp.6483.1.S1_s_at	A	A1TS	POPTR_0001s12900	POPTR_0001s12900 (11)	scaffold_1:10009286-10011700(+) (11)	NA	NA	NA	AT5G64680.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g15520.1	expressed protein	Medtr8g012770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6484.1.S1_s_at	A	A1TS	POPTR_0012s00670	POPTR_0012s00670 (10)	scaffold_12:372581-372623(-) (10)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.6485.1.S1_s_at	A	A1TS	POPTR_0004s20960	POPTR_0004s20960 (11)	scaffold_4:20304069-20304566(+) (11)	NA	NA	NA	AT1G08380.1	photosystem I subunit O 	LOC_Os04g33830.1	"membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6486.1.S1_s_at	A	A1TS	POPTR_0001s31700	POPTR_0001s31700 (11)	scaffold_1:30055057-30055520(-) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.6487.1.S1_x_at	A	A1TS	POPTR_0001s04180	POPTR_0001s04180 (11)	scaffold_1:3312191-3312372(+) (11)	NA	O22349	Tubulin alpha-3 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.6488.1.S1_s_at	A	A1TS	POPTR_0005s25260	POPTR_0005s25260 (11)	scaffold_5:23569010-23569257(+) (11)	NA	Q9SH88	Ribosome biogenesis regulatory protein homolog	AT2G37990.1	ribosome biogenesis regulatory protein (RRS1) family protein 	LOC_Os04g58830.1	"ribosome biogenesis regulatory protein, putative, expressed"	Medtr2g008920.1	Ribosomal biogenesis regulatory protein 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
Ptp.6489.1.S1_s_at	A	A1TS	POPTR_0002s03450	POPTR_0002s03450 (11)	scaffold_2:2137210-2137489(-) (11)	NA	NA	NA	AT5G66440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.649.1.A1_s_at	A	A1TA	POPTR_0016s08870	POPTR_0016s08870 (11)	scaffold_16:6679421-6679702(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.649.2.A1_at	A	A1TA	POPTR_0002s22220	POPTR_0002s22220 (10)	scaffold_2:18892145-18892291(+) (10)	NA	P27518	"Chlorophyll a-b binding protein 151, chloroplastic"	AT2G05070.1	photosystem II light harvesting complex gene 2.2 	LOC_Os03g39610.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g104980.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.6490.1.S1_s_at	A	A1TS	POPTR_0017s12240	POPTR_0017s12240 (11)	scaffold_17:12472103-12472629(+) (11)	NA	P55217	"Cystathionine gamma-synthase, chloroplastic"	AT3G01120.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g25940.4	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
Ptp.6491.1.S1_s_at	A	A1TS	POPTR_0007s09430	POPTR_0007s09430 (11)	scaffold_7:8836335-8838268(-) (11)	NA	Q9CSH3	Exosome complex exonuclease RRP44	AT2G17510.1	ribonuclease II family protein 	LOC_Os03g03710.1	"ribonuclease protein, putative, expressed"	Medtr8g087680.1	"Ribonuclease II; Nucleotide binding protein, PINc "	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
Ptp.6492.1.S1_s_at	A	A1TS	POPTR_0005s05450	POPTR_0005s05450 (11)	scaffold_5:3606831-3607021(-) (11)	NA	A2Z7B3	"GDP-mannose 3,5-epimerase 1"	AT5G28840.2	"GDP-D-mannose 3',5'-epimerase "	LOC_Os10g28200.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr7g140940.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.6494.1.S1_s_at	A	A1TS	POPTR_0014s04890	POPTR_0014s04890 (11)	scaffold_14:3781949-3784567(+) (11)	POPTR_0002s13980 (6)	Q93WY4	Probable WRKY transcription factor 12	AT2G44745.1	WRKY family transcription factor 	LOC_Os04g46060.1	OsWRKY36 - Superfamily of TFs having WRKY and zinc finger domains	AC202489_11.1	DNA-binding WRKY AC202489.10 68133-74292 E EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6495.1.S1_s_at	A	A1TS	POPTR_0003s16060	POPTR_0003s16060 (10)	scaffold_3:15671701-15673043(-) (10)	NA	P51132	"Cytochrome b-c1 complex subunit Rieske-2, mitochondrial"	AT5G13430.1	Ubiquinol-cytochrome C reductase iron-sulfur subunit 	LOC_Os02g32120.1	"cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed"	Medtr7g097200.1	Ubiquinol cytochrome reductase transmembrane region; Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0008121|ubiquinol-cytochrome-c reductase activity||GO:0009055|electron carrier activity||GO:0051537|""2 iron, 2 sulfur cluster binding"""	NA
Ptp.6496.1.A1_s_at	A	A1TS	POPTR_0003s03120	POPTR_0003s03120 (11)	scaffold_3:3487638-3488013(+) (11)	NA	A8N5E5	Protein SEY1	AT1G72960.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os01g39310.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6498.1.S1_s_at	A	A1TS	POPTR_0006s23730	POPTR_0006s23730 (11)	scaffold_6:22441378-22441502(-) (11)	NA	NA	NA	AT1G02180.1	ferredoxin-related 	LOC_Os08g35710.1	expressed protein	Medtr3g139260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6499.1.S1_s_at	A	A2TS	POPTR_0006s24220	POPTR_0006s24220 (11)//POPTR_0018s07650 (11)	scaffold_18:8253653-8254081(-) (11)//scaffold_6:22887131-22887554(+) (11)	NA	Q40471	Eukaryotic initiation factor 4A-9	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os06g48750.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.65.1.S1_s_at	A	A1TS	POPTR_0002s20310	POPTR_0002s20310 (11)	scaffold_2:16295069-16295372(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.650.1.S1_at	A	A1TS	POPTR_0016s09280	POPTR_0016s09280 (11)	scaffold_16:7262025-7262449(-) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.6500.1.A1_a_at	A	A1TS	POPTR_0018s11140	POPTR_0018s11140 (11)	scaffold_18:11932293-11932522(+) (11)	NA	Q91VH1	Adiponectin receptor protein 1	AT4G30850.2	heptahelical transmembrane  protein2 	LOC_Os06g44250.1	"haemolysin-III, putative, expressed"	Medtr8g121650.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
Ptp.6502.1.S1_s_at	A	A2TS	POPTR_0007s05400	POPTR_0007s05400 (11)//POPTR_0005s07640 (9)	scaffold_5:5231862-5231975(+) (9)//scaffold_7:3491127-3491542(+) (11)	NA	O24454	Ubiquitin carboxyl-terminal hydrolase 3	AT4G39910.1	ubiquitin-specific protease 3 	LOC_Os04g37950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr3g101810.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.6503.1.S1_at	A	A1TS	POPTR_0011s16670	POPTR_0011s16670 (9)	scaffold_11:18464105-18464619(-) (9)	NA	Q6K5Q0	Putative germin-like protein 2-1	AT3G05950.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr1g028070.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
Ptp.6505.1.S1_at	A	A1TS	POPTR_0007s11600	POPTR_0007s11600 (11)	scaffold_7:11966658-11967330(+) (11)	NA	P29162	L-ascorbate oxidase homolog	AT5G66920.1	SKU5  similar 17 	LOC_Os07g02810.1	"L-ascorbate oxidase homolog precursor, putative, expressed"	Medtr5g018260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.6507.1.S1_at	A	A1TS	POPTR_0006s10790	POPTR_0006s10790 (10)	scaffold_6:8160335-8160669(+) (10)	NA	NA	NA	AT3G51730.1	saposin B domain-containing protein 	LOC_Os01g07250.1	"saposin-like type B, region 1 family protein, putative, expressed"	NA	NA	GO:0006629|lipid metabolic process	NA	NA
Ptp.6508.1.S1_at	A	A1TS	POPTR_0010s20910	POPTR_0010s20910 (11)	scaffold_10:18336711-18338915(+) (11)	NA	Q9M2S6	E3 ubiquitin-protein ligase SDIR1	AT3G55530.1	RING/U-box superfamily protein 	LOC_Os03g16570.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g084210.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6509.1.S1_at	A	A1TS	POPTR_0010s10860	POPTR_0010s10860 (11)	scaffold_10:11260933-11260972(-) (11)	NA	Q9C5U3	26S protease regulatory subunit 8 homolog A	AT5G19990.1	regulatory particle triple-A ATPase 6A 	LOC_Os02g11050.1	"26S protease regulatory subunit, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.651.1.S1_s_at	A	A1TS	POPTR_0005s27100	POPTR_0005s27100 (11)	scaffold_5:24898493-24898807(-) (11)	NA	NA	NA	AT1G76250.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 74 Blast hits to 74 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os02g02730.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6511.1.S1_s_at	A	A1TS	POPTR_0001s13790	POPTR_0001s13790 (11)	scaffold_1:10860826-10861507(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.6514.1.S1_s_at	A	A1TS	POPTR_0003s05880	POPTR_0003s05880 (11)	scaffold_3:7259387-7259693(+) (11)	NA	P10606	"Cytochrome c oxidase subunit 5B, mitochondrial"	AT1G80230.1	Rubredoxin-like superfamily protein 	LOC_Os06g05080.1	"cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed"	Medtr2g125770.1	"Cytochrome c oxidase, subunit Vb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005740|mitochondrial envelope
Ptp.6515.1.S1_at	A	A1TS	POPTR_0005s24350	POPTR_0005s24350 (11)	scaffold_5:22932992-22933245(+) (11)	NA	NA	NA	AT4G14420.1	HR-like lesion-inducing protein-related 	LOC_Os04g10240.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6516.1.S1_s_at	A	A1TS	POPTR_0022s00300	POPTR_0022s00300 (11)	scaffold_22:56630-56961(+) (11)	NA	NA	NA	AT1G57680.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g66190.2	expressed protein	Medtr2g005140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6519.1.S1_s_at	A	A2TS	POPTR_0008s09450	POPTR_0008s09450 (11)//POPTR_0010s16680 (11)	scaffold_10:15555008-15555701(-) (11)//scaffold_8:5853949-5854646(+) (11)	NA	Q9C5W6	14-3-3-like protein GF14 iota	AT1G26480.1	general regulatory factor 12 	LOC_Os02g36974.4	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.652.1.S1_s_at	A	A1TS	POPTR_0012s14440	POPTR_0012s14440 (11)	scaffold_12:14337369-14337496(+) (11)	NA	P59224	40S ribosomal protein S13-2	AT4G00100.1	ribosomal protein S13A 	LOC_Os08g02410.1	"40S ribosomal protein S13, putative, expressed"	Medtr4g025470.1	"S15/NS1, RNA-binding; Ribosomal S13S15 N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6520.1.S1_s_at	A	A1TS	POPTR_0001s28540	POPTR_0001s28540 (11)	scaffold_1:27343022-27343362(+) (11)	NA	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
Ptp.6522.1.S1_at	A	A1TS	POPTR_0009s03400	POPTR_0009s03400 (9)	scaffold_9:4030476-4032050(-) (9)	NA	NA	NA	AT3G46450.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os03g60610.3	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr4g078780.1	"Cellular retinaldehyde-binding/triple function, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6524.1.S1_s_at	A	A1TS	POPTR_0006s06180	POPTR_0006s06180 (11)	scaffold_6:4393552-4393678(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.6525.2.A1_at	A	A1TS	POPTR_0009s15130	POPTR_0009s15130 (11)	scaffold_9:11752665-11752949(+) (11)	NA	NA	NA	AT5G22640.1	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6526.1.S1_at	A	A1TS	POPTR_0010s09790	POPTR_0010s09790 (10)	scaffold_10:10426367-10428276(-) (10)	NA	O23346	Imidazoleglycerol-phosphate dehydratase 2	AT4G14910.1	HISTIDINE BIOSYNTHESIS 5B 	LOC_Os04g52710.1	"imidazoleglycerol-phosphate dehydratase, putative, expressed"	Medtr1g083810.1	Imidazoleglycerol-phosphate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	GO:0004424|imidazoleglycerol-phosphate dehydratase activity	NA
Ptp.6528.1.S1_s_at	A	A1TS	POPTR_0018s00550	POPTR_0018s00550 (11)	scaffold_18:477309-478367(+) (11)	NA	Q5ZL00	Uncharacterized protein KIAA0090 homolog	AT5G11560.1	catalytics 	LOC_Os05g14170.1	expressed protein	AC225517_26.1	Quinonprotein alcohol dehydrogenase-like AC225517.6 112314-118182 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6529.1.S1_at	A	A1TS	POPTR_0001s09040	POPTR_0001s09040 (10)	scaffold_1:6921085-6921969(+) (10)	NA	Q54KJ8	General transcription factor IIE subunit 2	AT4G20330.1	"Transcription initiation factor TFIIE, beta subunit "	LOC_Os10g25770.2	"transcription initiation factor IIE subunit beta, putative, expressed"	Medtr5g010780.2	"transcription initiation factor-related, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005673|transcription factor TFIIE complex
Ptp.653.1.S1_s_at	A	A1TS	POPTR_0016s07400	POPTR_0016s07400 (11)	scaffold_16:5261128-5261432(-) (11)	NA	Q9SVD7	Ubiquitin-conjugating enzyme E2 variant 1D	AT3G52560.1	ubiquitin E2 variant 1D-4 	LOC_Os09g12570.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g157390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6530.1.S1_s_at	A	A1TS	POPTR_0002s13570	POPTR_0002s13570 (11)	scaffold_2:10066379-10066560(-) (11)	NA	O04905	Uridylate kinase	AT5G26667.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53790.1	"adenylate kinase, putative, expressed"	Medtr8g009290.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0019205|""nucleobase, nucleoside, nucleotide kinase activity""||GO:0005524|ATP binding"	NA
Ptp.6531.1.S1_s_at	A	A1TS	POPTR_0009s16530	POPTR_0009s16530 (10)	scaffold_9:12527488-12528379(-) (10)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6533.1.S1_at	A	A1TA	POPTR_0008s06590	POPTR_0008s06590 (11)	scaffold_8:3929310-3929382(-) (11)	NA	Q9Y169	Exostosin-2	AT3G55830.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g49150.1	"exostosin, putative, expressed"	Medtr5g089480.1	"EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
Ptp.6535.1.S1_at	A	A1TS	POPTR_0009s16900	POPTR_0009s16900 (11)	scaffold_9:12758609-12759048(-) (11)	NA	NA	NA	AT2G17230.1	EXORDIUM like 5 	LOC_Os06g04250.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6537.1.A1_s_at	A	A1TS	POPTR_0010s04230	POPTR_0010s04230 (11)	scaffold_10:5150052-5150497(+) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT3G06035.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6538.1.S1_s_at	A	A1TS	POPTR_0001s07730	POPTR_0001s07730 (11)	scaffold_1:5851179-5852684(-) (11)	NA	A7YVD7	"UPF0551 protein C8orf38 homolog, mitochondrial"	AT1G62730.1	Terpenoid synthases superfamily protein 	LOC_Os06g01470.1	"AGAP000326-PA, putative, expressed"	Medtr5g012220.1	"UPF0551 protein C8orf38 homolog, related "	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
Ptp.6539.1.S1_at	A	A1TS	POPTR_0010s12090	POPTR_0010s12090 (11)	scaffold_10:12179368-12179641(-) (11)	NA	NA	NA	AT1G70780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g21925.1	expressed protein	Medtr1g034970.1	"Senescence-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.654.1.S1_s_at	A	A1TS	POPTR_0007s14540	POPTR_0007s14540 (9)	scaffold_7:14297483-14300365(+) (10)	NA	NA	NA	AT4G37830.1	cytochrome c oxidase-related 	LOC_Os03g56190.1	"cytochrome c oxidase-related, putative, expressed"	Medtr8g102230.1	"Cytochrome c oxidase, subunit VIa "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005751|mitochondrial respiratory chain complex IV
Ptp.6541.1.S1_a_at	A	A1TS	POPTR_0001s34010	POPTR_0001s34010 (11)	scaffold_1:32161012-32161403(+) (11)	NA	Q9SE42	"Ribulose-phosphate 3-epimerase, cytoplasmic isoform"	AT3G01850.2	Aldolase-type TIM barrel family protein 	LOC_Os09g32810.1	"ribulose-phosphate 3-epimerase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0004750|ribulose-phosphate 3-epimerase activity	NA
Ptp.6542.1.S1_at	A	A1TS	POPTR_0006s11840	POPTR_0006s11840 (9)	scaffold_6:9034674-9034889(+) (9)	NA	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400	AT2G36570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g04230.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g073620.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.6543.1.S1_at	A	A1TS	POPTR_0010s01650	POPTR_0010s01650 (11)	scaffold_10:1838584-1840079(-) (11)	NA	Q42384	Protein pleiotropic regulatory locus 1	AT4G15900.1	pleiotropic regulatory locus 1 	LOC_Os03g21990.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g024610.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6543.1.S1_s_at	A	A1TS	POPTR_0010s01650	POPTR_0010s01650 (11)	scaffold_10:1838440-1840089(-) (11)	NA	Q42384	Protein pleiotropic regulatory locus 1	AT4G15900.1	pleiotropic regulatory locus 1 	LOC_Os03g21990.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g024610.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6546.1.S1_s_at	A	A1TS	POPTR_0012s07170	POPTR_0012s07170 (11)	scaffold_12:7945500-7945538(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT1G74690.1	IQ-domain 31 	LOC_Os05g45930.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g112590.2	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6547.1.S1_s_at	A	A1TS	POPTR_0006s11450	POPTR_0006s11450 (11)	scaffold_6:8680478-8681013(+) (11)	NA	Q9SSC7	Protein LURP-one-related 5	AT1G80120.1	Protein of unknown function (DUF567) 	LOC_Os12g02760.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126530.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6549.1.S1_at	A	A1TS	POPTR_0007s12440	POPTR_0007s12440 (11)	scaffold_7:12742510-12742606(-) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.6549.1.S1_s_at	A	A1TS	POPTR_0007s12440	POPTR_0007s12440 (11)	scaffold_7:12742207-12742471(-) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.655.1.S1_at	A	A1TS	POPTR_0017s04450	POPTR_0017s04450 (10)	scaffold_17:3424760-3425145(-) (10)	NA	P25083	"ADP,ATP carrier protein, mitochondrial"	AT4G28390.1	ADP/ATP carrier 3 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6550.1.S1_s_at	A	A1TS	POPTR_0002s11400	POPTR_0002s11400 (11)	scaffold_2:8434245-8434326(+) (11)	NA	O04135	Homeobox protein knotted-1-like 2	AT4G08150.1	KNOTTED-like from Arabidopsis thaliana 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.6552.1.S1_at	A	A1TS	POPTR_0007s15420	POPTR_0007s15420 (10)	scaffold_7:14960531-14960565(+) (10)	NA	Q9LHE5	Mitochondrial import receptor subunit TOM40 homolog 1	AT3G20000.1	translocase of the outer mitochondrial membrane 40 	LOC_Os03g20750.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr4g156410.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.6552.2.S1_s_at	A	A1TS	POPTR_0007s15420	POPTR_0007s15420 (11)	scaffold_7:14955963-14957522(+) (11)	NA	Q9LHE5	Mitochondrial import receptor subunit TOM40 homolog 1	AT3G20000.1	translocase of the outer mitochondrial membrane 40 	LOC_Os03g20750.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr4g156410.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.6553.1.S1_at	A	A1TA	POPTR_0006s26110	POPTR_0006s26110 (10)	scaffold_6:24387497-24388050(-) (10)	NA	Q9FJ30	Putative F-box/LRR-repeat protein At5g41840	AT5G41840.1	F-box/RNI-like superfamily protein 	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6553.2.A1_at	A	A1TS	POPTR_0006s26110	POPTR_0006s26110 (11)	scaffold_6:24388384-24388882(+) (11)	NA	Q9FJ30	Putative F-box/LRR-repeat protein At5g41840	AT5G41840.1	F-box/RNI-like superfamily protein 	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6554.1.S1_at	A	A1TS	POPTR_0014s02380	POPTR_0014s02380 (11)	scaffold_14:1994054-1995317(-) (11)	NA	Q9LTI3	Mannose-P-dolichol utilization defect 1 protein homolog	AT4G07390.1	Mannose-P-dolichol utilization defect 1 protein 	LOC_Os07g29610.1	"PQ loop repeat domain containing protein, expressed"	Medtr1g023860.1	Cystinosin/ERS1p repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6555.1.A1_at	A	A1TS	POPTR_0018s06840	POPTR_0018s06840 (11)	scaffold_18:6889847-6891497(-) (11)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6556.1.S1_s_at	A	A1TS	POPTR_0005s25990	POPTR_0005s25990 (11)	scaffold_5:24153641-24153911(+) (11)	NA	Q84WL9	AP-2 complex subunit sigma	AT1G47830.1	SNARE-like superfamily protein 	LOC_Os12g10560.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr1g031130.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.6557.1.A1_s_at	A	A1TS	POPTR_0008s02740	POPTR_0008s02740 (11)	scaffold_8:1396434-1398348(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.656.1.S1_a_at	A	A1TS	POPTR_0016s13310	POPTR_0016s13310 (11)	scaffold_16:12503021-12503537(-) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT3G08890.2	"Protein of unknown function, DUF538 "	LOC_Os05g27950.1	"DUF538 domain containing protein, putative, expressed"	Medtr7g076080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.656.2.A1_at	A	A1TS	POPTR_0016s13310	POPTR_0016s13310 (11)	scaffold_16:12502858-12503205(-) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT3G08890.2	"Protein of unknown function, DUF538 "	LOC_Os05g27950.1	"DUF538 domain containing protein, putative, expressed"	Medtr7g076080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6560.1.S1_at	A	A1TS	POPTR_0011s05430	POPTR_0011s05430 (10)	scaffold_11:5372139-5372473(+) (10)	NA	Q93Z00	Transcription factor TCP14	AT3G47620.1	"TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 "	LOC_Os02g51280.1	"TCP-domain protein, putative, expressed"	Medtr8g112560.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6561.1.S1_at	A	A1TS	POPTR_0016s12660	POPTR_0016s12660 (10)	scaffold_16:12034660-12035144(-) (10)	NA	NA	NA	AT5G01360.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18120.1	"proteins of unknown function domain containing protein, expressed"	AC233100_70.1	"Protein of unknown function DUF231, plant AC233100.6 313231-310151 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6564.1.S1_at	A	A1TS	POPTR_0001s06550	POPTR_0001s06550 (10)	scaffold_1:5037612-5039199(+) (10)	NA	NA	NA	AT5G13500.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g32060.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6565.1.S1_s_at	A	A1TS	POPTR_0001s41410	POPTR_0001s41410 (11)	scaffold_1:41024859-41025243(-) (11)	NA	NA	NA	AT3G15480.1	Protein of unknown function (DUF1218) 	LOC_Os07g27810.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6566.1.S1_s_at	A	A1TS	POPTR_0001s18040	POPTR_0001s18040 (11)	scaffold_1:15017007-15017479(-) (11)	NA	Q94738	97 kDa heat shock protein	AT1G79920.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os01g08560.2	"DnaK family protein, putative, expressed"	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6567.1.S1_s_at	A	A1TS	POPTR_0005s24130	POPTR_0005s24130 (11)	scaffold_5:22767443-22768006(+) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.6568.1.S1_at	A	A1TS	POPTR_0001s00250	POPTR_0001s00250 (11)	scaffold_1:112915-113519(-) (11)	NA	Q9SU40	Monocopper oxidase-like protein SKU5	AT4G12420.2	Cupredoxin superfamily protein 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.6569.1.S1_at	A	A1TS	POPTR_0006s00900	POPTR_0006s00900 (11)	scaffold_6:508234-508758(-) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21790.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g097770.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.657.1.S1_at	A	A1TS	POPTR_0002s09950	POPTR_0002s09950 (10)	scaffold_2:7138984-7140910(+) (11)	NA	P27608	"Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic"	AT1G22410.1	Class-II DAHP synthetase family protein 	LOC_Os07g42960.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003849|3-deoxy-7-phosphoheptulonate synthase activity	NA
Ptp.6574.1.S1_s_at	A	A1TS	POPTR_0018s07500	POPTR_0018s07500 (11)	scaffold_18:7813198-7813420(-) (11)	NA	Q54DU5	von Willebrand factor A domain-containing protein DDB_G0292028	AT1G19110.1	inter-alpha-trypsin inhibitor heavy chain-related 	LOC_Os07g42280.1	"von Willebrand factor type A domain containing protein, expressed"	Medtr2g049710.1	"von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6576.1.S1_at	A	A1TS	POPTR_0012s09540	POPTR_0012s09540 (10)	scaffold_12:10524954-10526265(-) (10)	NA	Q01402	"Nucleoside diphosphate kinase 2, chloroplastic"	AT5G63310.1	nucleoside diphosphate kinase 2 	LOC_Os12g36194.1	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
Ptp.6579.1.A1_a_at	A	A1TA	POPTR_0006s13840	POPTR_0006s13840 (10)	scaffold_6:11028551-11028784(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6580.1.S1_a_at	A	A1TS	POPTR_0006s20260	POPTR_0006s20260 (11)	scaffold_6:19314752-19315069(+) (11)	NA	Q13231	Chitotriosidase-1	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain 	LOC_Os11g27400.1	"glycosyl hydrolase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6581.1.S1_s_at	A	A1TS	POPTR_0005s16600	POPTR_0005s16600 (11)	scaffold_5:13550698-13550958(+) (11)	NA	P33050	Pollen-specific protein C13	AT4G08685.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g22590.1	"POEI24 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	CU651566_3.1	Pollen Ole e 1 allergen and extensin CU651566.9 19800-21791 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6582.2.S1_at	A	A1TS	POPTR_0003s06260	POPTR_0003s06260 (10)	scaffold_3:7727981-7728029(+) (10)	NA	NA	NA	AT1G72640.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g29730.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6583.1.S1_x_at	A	A1TS	POPTR_0008s02430	POPTR_0008s02430 (10)	scaffold_8:1181368-1182978(+) (10)	NA	NA	NA	AT1G66240.1	homolog of anti-oxidant 1 	LOC_Os08g10480.1	heavy metal-associated domain containing protein	Medtr1g117110.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.6585.1.S1_s_at	A	A1TS	POPTR_0018s04600	POPTR_0018s04600 (11)	scaffold_18:3871816-3874768(-) (11)	NA	P0A9H7	Cyclopropane-fatty-acyl-phospholipid synthase	AT4G33110.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g37610.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr3g139610.2	Methyltransferase type 11 	GO:0008610|lipid biosynthetic process	GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
Ptp.6586.1.S1_at	A	A1TS	POPTR_1182s00200	POPTR_1182s00200 (10)	scaffold_1182:6103-6445(+) (10)//scaffold_2:8551757-8552099(-) (10)	NA	Q3USY0	Putative sodium-coupled neutral amino acid transporter 11	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6587.1.S1_at	A	A1TS	POPTR_0006s28140	POPTR_0006s28140 (9)	scaffold_6:25942957-25944813(+) (9)	NA	Q96319	Enhancer of rudimentary homolog	AT5G10810.1	"enhancer of rudimentary protein, putative "	LOC_Os02g39830.1	"enhancer of rudimentary protein, putative, expressed"	Medtr1g017030.1	Enhancer of rudimentary 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.659.1.S1_s_at	A	A1TS	POPTR_0006s02640	POPTR_0006s02640 (11)	scaffold_6:1684589-1685660(-) (11)	NA	Q9LTV6	"Peroxisomal 2,4-dienoyl-CoA reductase"	AT3G12800.1	short-chain dehydrogenase-reductase B 	LOC_Os04g52400.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr8g146300.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.6590.1.S1_at	A	A1TS	POPTR_0002s22900	POPTR_0002s22900 (11)	scaffold_2:20007214-20007646(+) (11)	NA	NA	NA	AT3G63030.1	methyl-CPG-binding domain 4 	LOC_Os05g33550.1	"methyl-binding domain protein MBD, putative, expressed"	Medtr1g111540.1	"Thymidine kinase; Methyl-CpG binding; Zinc finger, CW-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.6592.1.A1_s_at	A	A5TS	POPTR_0010s09000	POPTR_0010s09000 (11)//POPTR_0010s09040 (11)//POPTR_0010s09020 (11)//POPTR_0010s09060 (10)//POPTR_0010s09050 (10)	scaffold_10:9787277-9787570(+) (11)//scaffold_10:9810411-9810704(+) (11)//scaffold_10:9845624-9845917(+) (11)//scaffold_10:9871918-9872211(+) (10)//scaffold_10:9904795-9905088(+) (10)	NA	O48780	3-ketoacyl-CoA synthase 11	AT2G26640.1	3-ketoacyl-CoA synthase 11 	LOC_Os06g39750.3	"3-ketoacyl-CoA synthase, putative, expressed"	AC233668_12.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase AC233668.2 25806-29562 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.6593.1.S1_x_at	A	A1TS	POPTR_0015s10330	POPTR_0015s10330 (11)	scaffold_15:11291256-11292128(+) (11)	NA	P25861	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G13440.1	glyceraldehyde-3-phosphate dehydrogenase C2 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.6593.2.S1_s_at	A	A1TS	POPTR_0012s09570	POPTR_0012s09570 (11)	scaffold_12:10559604-10560143(+) (11)	NA	P26518	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G13440.1	glyceraldehyde-3-phosphate dehydrogenase C2 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.6596.1.S1_at	A	A1TS	POPTR_0006s15040	POPTR_0006s15040 (10)	scaffold_6:12512995-12513611(+) (10)	NA	P93002	Regulatory protein NPR1	AT1G64280.1	regulatory protein (NPR1) 	LOC_Os01g09800.1	"BTBA1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g046480.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
Ptp.6598.1.S1_at	A	A1TS	POPTR_0006s14370	POPTR_0006s14370 (11)	scaffold_6:11728788-11728946(+) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6598.1.S1_s_at	A	A1TS	POPTR_0018s05370	POPTR_0018s05370 (10)	scaffold_18:4919067-4919260(+) (10)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6599.1.S1_s_at	A	A1TS	POPTR_0005s16270	POPTR_0005s16270 (11)	scaffold_5:12982657-12983163(+) (11)	NA	Q6GQJ2	Protein Jade-1	AT1G77800.1	PHD finger family protein 	LOC_Os02g52960.1	"PHD-finger domain containing protein, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.66.1.S1_at	A	A1TS	POPTR_0005s06640	POPTR_0005s06640 (9)	scaffold_5:4453563-4453924(+) (9)	NA	Q8L7V3	Probable methyltransferase PMT26	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.660.1.S1_at	A	A1TS	POPTR_0005s18540	POPTR_0005s18540 (11)	scaffold_5:16779071-16779593(-) (11)	NA	Q9FE83	F-box protein SKIP2	AT5G67250.1	SKP1/ASK1-interacting protein 2 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6604.1.S1_at	A	A1TS	POPTR_0008s05660	POPTR_0008s05660 (11)	scaffold_8:3290881-3291394(+) (11)	NA	Q2JRQ8	Ribosomal RNA large subunit methyltransferase N	AT2G39670.1	Radical SAM superfamily protein 	LOC_Os01g74190.1	"radical SAM enzyme, putative, expressed"	Medtr5g087280.1	Conserved hypothetical protein 48; Radical SAM 	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
Ptp.6605.1.S1_s_at	A	A2TS	POPTR_0004s13640	POPTR_0011s02750 (11)//POPTR_0004s13640 (11)	scaffold_11:2685691-2686326(+) (11)//scaffold_4:13995969-13996601(+) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6608.1.S1_s_at	A	A1TS	POPTR_0008s20530	POPTR_0008s20530 (10)	scaffold_8:14275422-14275901(-) (10)	NA	Q8W4J2	Mitogen-activated protein kinase 16	AT5G19010.1	mitogen-activated protein kinase 16 	LOC_Os05g05160.1	"CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g026470.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.661.2.S1_at	A	A1TS	POPTR_0005s27730	POPTR_0005s27730 (11)	scaffold_5:25254579-25254643(+) (11)	NA	Q9LM66	Xylem cysteine proteinase 2	AT1G20850.1	xylem cysteine peptidase 2 	LOC_Os01g73980.1	"xylem cysteine proteinase 2 precursor, putative, expressed"	Medtr3g159890.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.661.3.S1_a_at	A	A1TS	POPTR_0002s00720	POPTR_0002s00720 (11)	scaffold_2:317994-318805(-) (11)	NA	Q9LM66	Xylem cysteine proteinase 2	AT1G20850.1	xylem cysteine peptidase 2 	LOC_Os01g73980.1	"xylem cysteine proteinase 2 precursor, putative, expressed"	Medtr3g159890.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6612.1.S1_at	A	A1TS	POPTR_0007s14720	POPTR_0007s14720 (11)	scaffold_7:14486822-14487334(+) (11)	NA	NA	NA	AT2G22840.1	growth-regulating factor 1 	LOC_Os03g51970.1	"growth-regulating factor, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
Ptp.6613.1.S1_at	A	A1TS	POPTR_0005s02020	POPTR_0005s02020 (10)	scaffold_5:1315855-1317144(+) (10)	NA	Q6P642	DnaJ homolog subfamily B member 6	AT1G56300.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g18870.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g138160.1	"Glycoside hydrolase, family 11; Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.6616.1.S1_a_at	A	A1TS	POPTR_0001s37430	POPTR_0001s37430 (11)	scaffold_1:36429940-36429986(-) (11)	NA	Q9M4Y3	"30S ribosomal protein S10, chloroplastic"	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6616.1.S1_at	A	A1TS	POPTR_0001s37430	POPTR_0001s37430 (11)	scaffold_1:36427913-36428883(-) (11)	NA	Q9M4Y3	"30S ribosomal protein S10, chloroplastic"	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6617.1.S1_s_at	A	A1TS	POPTR_0007s15080	POPTR_0007s15080 (11)	scaffold_7:14723235-14723910(-) (11)	NA	NA	NA	AT1G16720.1	high chlorophyll fluorescence phenotype 173 	LOC_Os06g49120.1	"Complex I intermediate-associated protein 30 domain containing protein, putative, expressed"	Medtr4g163250.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6618.1.S1_s_at	A	A1TS	POPTR_0003s13440	POPTR_0003s13440 (11)	scaffold_3:13823147-13823293(-) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6619.1.S1_s_at	A	A1TS	POPTR_0010s00900	POPTR_0010s00900 (11)	scaffold_10:612108-612368(-) (11)	NA	P42736	Ethylene-responsive transcription factor RAP2-3	AT3G16770.1	ethylene-responsive element binding protein 	LOC_Os09g26420.4	"AP2 domain containing protein, expressed"	Medtr1g107940.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.662.1.S1_s_at	A	A1TS	POPTR_0004s05080	POPTR_0004s05080 (11)	scaffold_4:3809484-3809638(+) (11)	NA	NA	NA	AT5G28010.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	NA	NA	Medtr8g012990.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.6621.1.S1_at	A	A1TS	POPTR_0014s11760	POPTR_0014s11760 (11)	scaffold_14:8732285-8733393(+) (11)	NA	Q5R9W6	Transcription initiation factor TFIID subunit 13	AT1G02680.1	TBP-associated factor 13 	LOC_Os01g23630.1	"transcription initiation factor IID, 18kD subunit family protein, expressed"	Medtr1g107340.1	Histone-fold 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006366|transcription from RNA polymerase II promoter	GO:0003702|RNA polymerase II transcription factor activity	NA
Ptp.6623.1.S1_at	A	A1TS	POPTR_0015s04430	POPTR_0015s04430 (11)	scaffold_15:4577265-4578138(+) (11)	NA	NA	NA	AT1G18180.1	Protein of unknown function (DUF1295) 	LOC_Os03g50070.1	"DUF1295 domain containing protein, putative, expressed"	Medtr4g155170.1	Protein of unknown function DUF1295 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6624.1.S1_at	A	A1TS	POPTR_0001s25490	POPTR_0001s25490 (9)	scaffold_1:24591024-24591642(-) (9)	NA	O82797	Proliferating cell nuclear antigen	AT2G29570.1	proliferating cell nuclear antigen 2 	LOC_Os02g56130.1	"PCNA - Putative DNA replicative polymerase clamp, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006275|regulation of DNA replication	GO:0003677|DNA binding||GO:0030337|DNA polymerase processivity factor activity	GO:0043626|PCNA complex
Ptp.6627.1.S1_at	A	A1TS	POPTR_0001s44110	POPTR_0001s44110 (11)	scaffold_1:44584349-44585214(+) (11)	NA	Q02764	"50S ribosomal protein L24, chloroplastic"	AT5G54600.1	Translation protein SH3-like family protein 	LOC_Os06g46930.1	"ribosomal protein L24, putative, expressed"	Medtr2g096410.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6628.1.S1_at	A	A1TS	POPTR_0009s15490	POPTR_0009s15490 (11)	scaffold_9:11968313-11969281(+) (11)	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.6629.1.S1_at	A	A1TS	POPTR_0009s14950	POPTR_0009s14950 (10)	scaffold_9:11608566-11609717(-) (10)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os11g37070.1	expressed protein	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.663.1.S1_x_at	A	A2TS	POPTR_0013s00690	POPTR_0013s00700 (9)//POPTR_0013s00690 (9)	scaffold_13:337604-342556(+) (11)	NA	O48920	ADP-ribosylation factor	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.663.2.S1_x_at	A	A1TS	POPTR_0014s11180	POPTR_0014s11180 (9)	scaffold_14:8316217-8316576(+) (9)	NA	P51823	ADP-ribosylation factor 2	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os05g41060.1	"ADP-ribosylation factor, putative, expressed"	Medtr1g106180.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6631.1.S1_s_at	A	A1TS	POPTR_0006s11060	POPTR_0006s11060 (11)	scaffold_6:8385347-8386145(-) (11)	NA	P85801	Thioredoxin H-type	AT3G08710.2	thioredoxin H-type 9 	LOC_Os01g07376.1	"thioredoxin, putative, expressed"	Medtr8g116230.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.6632.1.S1_at	A	A1TS	POPTR_0019s15110	POPTR_0019s15110 (11)	scaffold_19:15707938-15708263(-) (11)	NA	O24312	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6633.1.S1_at	A	A1TS	POPTR_0018s06830	POPTR_0018s06830 (11)	scaffold_18:6877409-6880315(+) (11)	NA	NA	NA	AT3G47650.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os06g22690.1	"bundle sheath defective protein 2, putative, expressed"	Medtr8g120270.1	"Chaperon P13.9, putative "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.6636.1.A1_s_at	A	A1TS	POPTR_0013s14330	POPTR_0013s14330 (11)	scaffold_13:14562354-14563079(+) (11)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G28220.1	NAD(P)H dehydrogenase B1 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.6636.2.S1_at	A	A1TS	POPTR_0013s14330	POPTR_0013s14330 (11)	scaffold_13:14560626-14562242(+) (11)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G28220.1	NAD(P)H dehydrogenase B1 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.6638.1.S1_s_at	A	A1TA	POPTR_0001s18460	POPTR_0001s18460 (11)	scaffold_1:15517101-15517351(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.664.2.A1_a_at	A	A1TS	POPTR_0009s04960	POPTR_0009s04960 (9)	scaffold_9:5186270-5186355(+) (9)	NA	O81643	Villin-1	AT2G29890.1	villin-like 1 	LOC_Os06g44890.1	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.6640.1.S1_at	A	A1TS	POPTR_0001s28100	POPTR_0001s28100 (11)	scaffold_1:26883675-26884307(-) (11)	NA	NA	NA	AT5G12240.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages. 	LOC_Os07g44744.1	expressed protein	Medtr5g096100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6641.1.S1_s_at	A	A1TS	POPTR_0018s02630	POPTR_0018s02630 (11)	scaffold_18:2378937-2379520(+) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT2G25060.1	early nodulin-like protein 14 	LOC_Os02g06670.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g138410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.6643.1.S1_at	A	A1TS	POPTR_0008s13070	POPTR_0008s13070 (11)	scaffold_8:8522071-8522570(-) (11)	NA	Q9FVJ3	ADP-ribosylation factor GTPase-activating protein AGD12	AT1G70790.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g22130.1	expressed protein	Medtr1g034940.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6646.1.S1_a_at	A	A1MS	POPTR_0011s13890	POPTR_0011s13890 (11)	scaffold_11:16504435-16504791(+) (11)	NA	Q9C6I6	"Electron transfer flavoprotein subunit alpha, mitochondrial"	AT1G50940.1	electron transfer flavoprotein alpha 	LOC_Os03g61920.1	"electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g110780.1	"Electron transfer flavoprotein, alpha subunit; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6646.2.A1_at	A	A1MS	POPTR_0011s13890	POPTR_0011s13890 (11)	scaffold_11:16504272-16504699(+) (11)	NA	Q9C6I6	"Electron transfer flavoprotein subunit alpha, mitochondrial"	AT1G50940.1	electron transfer flavoprotein alpha 	LOC_Os03g61920.1	"electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g110780.1	"Electron transfer flavoprotein, alpha subunit; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6646.3.S1_at	A	A1TS	POPTR_0001s09830	POPTR_0001s09830 (9)	scaffold_1:7581544-7582606(+) (9)	NA	P92947	"Monodehydroascorbate reductase, chloroplastic"	AT1G63940.2	monodehydroascorbate reductase 6 	LOC_Os08g05570.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.665.1.S1_at	A	A1TS	POPTR_0018s08290	POPTR_0018s08290 (11)	scaffold_18:9184201-9185162(-) (11)	NA	P40343	Vacuolar protein sorting-associated protein 27	AT2G26210.1	Ankyrin repeat family protein 	LOC_Os07g42640.1	"FYVE zinc finger family protein, expressed"	Medtr8g133500.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6652.1.A1_s_at	A	A1TS	POPTR_0001s16790	POPTR_0001s16790 (11)	scaffold_1:13588982-13589341(+) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6653.1.S1_at	A	A2TS	POPTR_0005s04250	POPTR_0005s04250 (11)//POPTR_0369s00200 (11)	scaffold_369:6012-6543(+) (11)//scaffold_5:2863235-2863765(+) (11)	NA	O65759	Histone H2AX	AT1G54690.1	gamma histone variant H2AX 	LOC_Os12g34510.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr7g130040.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.6656.1.S1_s_at	A	A1TS	POPTR_0008s08790	POPTR_0008s08790 (9)	scaffold_8:5446599-5447672(-) (9)	NA	Q9C554	Expansin-A1	AT1G69530.2	expansin A1 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6657.1.S1_at	A	A1TS	POPTR_0001s38630	POPTR_0001s38630 (11)	scaffold_1:37813522-37813640(+) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT5G59180.1	DNA-directed RNA polymerase II 	LOC_Os05g33240.1	"DNA-directed RNA polymerase II subunit RPB7, putative, expressed"	Medtr4g165790.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003723|RNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.6659.2.S1_a_at	A	A1TS	POPTR_0013s01680	POPTR_0013s01680 (11)	scaffold_13:951427-952805(-) (11)	NA	Q9M9W1	60S ribosomal protein L22-2	AT3G05560.3	Ribosomal L22e protein family 	LOC_Os07g47710.1	"60S ribosomal protein L22-2, putative, expressed"	Medtr1g108350.1	Ribosomal L22e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.666.1.S1_at	A	A1TS	POPTR_0002s25970	POPTR_0002s25970 (11)	scaffold_2:22961789-22962100(+) (11)	NA	Q84JA6	Cellulose synthase A catalytic subunit 4 [UDP-forming]	AT5G44030.1	cellulose synthase A4 	LOC_Os10g32980.1	"CESA7 - cellulose synthase, expressed"	Medtr4g089800.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.6660.1.S1_at	A	A1TS	POPTR_0018s11170	POPTR_0018s11170 (11)	scaffold_18:11964382-11967333(+) (11)	NA	P23326	"50S ribosomal protein L35, chloroplastic"	AT2G24090.1	Ribosomal protein L35 	LOC_Os06g43900.1	"ribosomal protein L35, putative, expressed"	Medtr8g144750.1	Ribosomal protein L35 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6661.1.S1_s_at	A	A1TS	POPTR_0015s04320	POPTR_0015s04320 (11)	scaffold_15:4407839-4409241(-) (11)	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT3G18050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g37156.1	expressed protein	Medtr4g155370.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6662.1.S1_at	A	A1TS	POPTR_0012s03140	POPTR_0012s03140 (11)	scaffold_12:2499202-2499292(-) (11)	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6662.1.S1_x_at	A	A1TS	POPTR_0012s03140	POPTR_0012s03140 (11)	scaffold_12:2499096-2499956(-) (11)	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6663.1.S1_a_at	A	A1TS	POPTR_0018s04770	POPTR_0018s04770 (11)	scaffold_18:4137867-4137920(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g121920.2	"Glu-tRNAGln amidotransferase, C subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6664.1.S1_at	A	A1TS	POPTR_0014s12370	POPTR_0014s12370 (11)	scaffold_14:9129965-9132107(+) (11)	NA	Q9VI10	Probable small nuclear ribonucleoprotein Sm D2	AT3G62840.2	Small nuclear ribonucleoprotein family protein 	LOC_Os05g24970.2	"LSM domain containing protein, expressed"	Medtr4g156540.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6665.1.S1_at	A	A1TS	POPTR_0010s15460	POPTR_0010s15460 (9)	scaffold_10:14692800-14693037(+) (9)	POPTR_0010s15470 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6666.1.S1_at	A	A1MS	POPTR_0008s23250	POPTR_0008s23250 (10)	scaffold_8:18577253-18577745(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6667.1.S1_s_at	A	A2TS	POPTR_0001s40480	POPTR_0001s40480 (11)//POPTR_0011s11390 (11)	scaffold_1:39924546-39924806(-) (11)//scaffold_11:14143604-14143863(-) (11)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14420.2	Aldolase-type TIM barrel family protein 	LOC_Os03g57220.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6668.1.S1_at	A	A1TS	POPTR_0014s16670	POPTR_0014s16670 (11)	scaffold_14:12768089-12768327(+) (11)	NA	Q8S4Y1	"Acetyl-CoA acetyltransferase, cytosolic 1"	AT5G48230.2	acetoacetyl-CoA thiolase 2 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	Medtr5g106000.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6669.1.S1_at	A	A2TS	POPTR_0006s18360	POPTR_0006s18360 (10)//POPTR_0168s00200 (10)	scaffold_168:1283-1419(-) (10)//scaffold_6:16760957-16761093(+) (10)	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.667.1.S1_at	A	A1TS	POPTR_0014s07570	POPTR_0014s07570 (10)	scaffold_14:5690927-5691035(+) (10)	NA	P37225	"NAD-dependent malic enzyme 59 kDa isoform, mitochondrial"	AT4G00570.1	NAD-dependent malic enzyme 2 	LOC_Os10g35960.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g034840.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.6670.1.S1_at	A	A1TS	POPTR_0019s09460	POPTR_0019s09460 (11)	scaffold_19:11000920-11002833(+) (11)	NA	Q5Q995	Protein KRTCAP2 homolog	AT1G77350.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g40780.1	"keratinocytes-associated protein 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6670.1.S1_s_at	A	A1TS	POPTR_0019s09460	POPTR_0019s09460 (11)	scaffold_19:11000693-11002982(+) (11)	NA	Q5Q995	Protein KRTCAP2 homolog	AT1G77350.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g40780.1	"keratinocytes-associated protein 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6671.1.S1_at	A	A1TS	POPTR_0001s38770	POPTR_0001s38770 (9)	scaffold_1:38035252-38035529(-) (9)	NA	Q797A7	Uncharacterized amino acid permease YfnA	AT1G17120.1	cationic amino acid transporter 8 	LOC_Os01g11160.1	"amino acid permease family protein, putative, expressed"	Medtr4g137890.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
Ptp.6672.1.S1_s_at	A	A2TS	POPTR_0002s04720	POPTR_0005s23810 (9)//POPTR_0002s04720 (9)	scaffold_2:2968973-2969055(+) (9)//scaffold_5:22543817-22543899(-) (9)	NA	O23628	Histone H2A variant 1	AT3G54560.1	histone H2A 11 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g083350.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.6673.1.S1_at	A	A1TS	POPTR_0012s11050	POPTR_0012s11050 (9)	scaffold_12:11666167-11667759(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr6g094220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6676.1.S1_s_at	A	A2TS	POPTR_0002s01080	POPTR_0005s27300 (11)//POPTR_0002s01080 (11)	scaffold_2:569107-569991(-) (11)//scaffold_5:25008805-25009512(+) (11)	NA	P17598	Catalase isozyme 1	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
Ptp.6677.3.S1_a_at	A	A1MS	POPTR_0016s13820	POPTR_0016s13820 (10)	scaffold_16:12966267-12966378(-) (10)	NA	Q9LZX1	Protein LURP-one-related 15	AT5G01750.1	Protein of unknown function (DUF567) 	LOC_Os07g12730.1	"DUF567 domain containing protein, putative, expressed"	Medtr7g077600.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6679.1.A1_at	A	A1TS	POPTR_0009s07450	POPTR_0009s07450 (11)	scaffold_9:6950396-6950790(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.668.1.S1_at	A	A1TS	POPTR_0014s17490	POPTR_0014s17490 (11)	scaffold_14:13718355-13718890(+) (11)	NA	NA	NA	AT3G07510.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g09930.1	expressed protein	Medtr7g046740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6680.1.S1_at	A	A1TS	POPTR_0006s10570	POPTR_0006s10570 (11)	scaffold_6:7909012-7909565(-) (11)	NA	NA	NA	AT3G51660.1	Tautomerase/MIF superfamily protein 	LOC_Os11g01600.1	"macrophage migration inhibitory factor, putative, expressed"	Medtr7g076390.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6682.1.S1_at	A	A1TA	POPTR_0008s17650	POPTR_0008s17650 (9)	scaffold_8:11861033-11861277(+) (9)	NA	Q9SP35	Mitochondrial import inner membrane translocase subunit Tim17	AT2G37410.2	translocase inner membrane subunit 17-2 	LOC_Os07g41330.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.6685.1.S1_at	A	A1TS	POPTR_0014s11230	POPTR_0014s11230 (9)	scaffold_14:8347983-8348400(+) (9)	NA	P81391	Myb-related protein 305	AT2G47190.1	myb domain protein 2 	LOC_Os05g04210.1	"MYB family transcription factor, putative, expressed"	Medtr1g106240.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6686.1.S1_at	A	A1TS	POPTR_0001s24980	POPTR_0001s24980 (11)	scaffold_1:24231548-24232101(-) (11)	NA	NA	NA	AT1G76440.3	HSP20-like chaperones superfamily protein 	NA	NA	Medtr2g007400.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6689.1.S1_at	A	A3TS	POPTR_0006s02890	POPTR_0006s02890 (11)//POPTR_0097s00200 (11)//POPTR_0006s02880 (9)	scaffold_6:1823177-1823218(+) (9)//scaffold_6:1837951-1838141(+) (11)//scaffold_97:4741-4938(-) (11)	POPTR_0006s02855 (8)	P02879	Ricin	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6689.1.S1_s_at	A	A2TS	POPTR_0006s02855	POPTR_0006s02855 (11)//POPTR_0006s02880 (11)	scaffold_6:1809000-1809266(-) (11)//scaffold_6:1822893-1823159(+) (11)	POPTR_0006s02890 (8)	P02879	Ricin	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.669.1.S1_at	A	A1TS	POPTR_0013s06250	POPTR_0013s06250 (10)	scaffold_13:4623451-4623693(+) (10)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT3G03690.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os10g30080.1	"xylosyltransferase, putative, expressed"	Medtr7g103520.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.6690.1.S1_at	A	A1TS	POPTR_0010s02780	POPTR_0010s02780 (11)	scaffold_10:3281539-3281960(-) (11)	NA	Q9ZNV9	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os05g44570.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g025860.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
Ptp.6690.1.S1_s_at	A	A1TS	POPTR_0010s02780	POPTR_0010s02780 (11)	scaffold_10:3281967-3282931(-) (11)	NA	Q9ZNV9	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os05g44570.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g025860.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
Ptp.6691.1.S1_at	A	A1TS	POPTR_0003s12330	POPTR_0003s12330 (11)	scaffold_3:12940591-12941103(-) (11)	NA	Q9FUL4	60S ribosomal protein L24	AT2G36620.1	ribosomal protein L24 	LOC_Os01g59990.2	"ribosomal protein L24, putative, expressed"	Medtr1g073730.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6691.1.S1_x_at	A	A1TS	POPTR_0003s12330	POPTR_0003s12330 (11)	scaffold_3:12940591-12941269(-) (11)	NA	Q9FUL4	60S ribosomal protein L24	AT2G36620.1	ribosomal protein L24 	LOC_Os01g59990.2	"ribosomal protein L24, putative, expressed"	Medtr1g073730.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6692.1.S1_at	A	A1TS	POPTR_0009s13240	POPTR_0009s13240 (9)	scaffold_9:10581600-10583549(+) (9)	NA	P45434	Translocon-associated protein subunit alpha	AT2G21160.1	"Translocon-associated protein (TRAP), alpha subunit "	LOC_Os06g50154.1	"translocon-associated protein subunit alpha precursor, putative, expressed"	Medtr4g100770.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6693.1.S1_s_at	A	A1TS	POPTR_0006s23580	POPTR_0006s23580 (9)	scaffold_6:22289702-22290189(+) (11)	NA	Q93VM8	Copper transporter 5	AT5G20650.1	copper transporter 5 	LOC_Os09g26900.1	"ctr copper transporter family protein, putative, expressed"	Medtr3g139090.1	Ctr copper transporter 	GO:0006825|copper ion transport	GO:0005375|copper ion transmembrane transporter activity	GO:0016021|integral to membrane
Ptp.6695.1.S1_s_at	A	A1TS	POPTR_0008s07550	POPTR_0008s07550 (11)	scaffold_8:4617985-4619537(-) (11)	NA	NA	NA	AT3G56210.4	ARM repeat superfamily protein 	LOC_Os03g46310.1	expressed protein	Medtr3g097260.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6697.1.S1_x_at	A	A1TS	POPTR_0006s10550	POPTR_0006s10550 (11)	scaffold_6:7899226-7899978(-) (11)	NA	P91850	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os11g01600.1	"macrophage migration inhibitory factor, putative, expressed"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6699.1.S1_s_at	A	A1TS	POPTR_0006s14010	POPTR_0006s14010 (11)	scaffold_6:11270338-11270588(+) (11)	NA	P17407	21 kDa protein	AT5G20740.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr8g132880.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.67.1.S1_at	A	A1TS	POPTR_0015s14260	POPTR_0015s14260 (11)	scaffold_15:13938929-13939513(+) (11)	NA	Q9D1P4	Cysteine and histidine-rich domain-containing protein 1	AT5G51700.1	protein binding;zinc ion binding 	LOC_Os02g33180.1	"rar1, putative, expressed"	Medtr1g130420.1	CHORD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.670.1.A1_at	A	A1TS	POPTR_0018s09260	POPTR_0018s09260 (10)	scaffold_18:10115072-10115190(+) (10)	NA	NA	NA	AT2G44970.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g48416.2	"lipase-related, putative, expressed"	Medtr8g006030.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6702.1.S1_s_at	A	A1TS	POPTR_0002s25240	POPTR_0002s25240 (11)	scaffold_2:22385540-22385781(+) (11)	NA	Q8W453	Putative lipid-transfer protein DIR1	AT5G48485.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g18990.1	"LTPL40 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g045700.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6705.1.S1_s_at	A	A1TS	POPTR_0016s14560	POPTR_0016s14560 (11)	scaffold_16:13751822-13751953(+) (11)	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g56330.1	"TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6706.1.S1_x_at	A	A1TS	POPTR_0002s03030	POPTR_0002s03030 (11)	scaffold_2:1888146-1888582(+) (11)	NA	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6707.1.S1_s_at	A	A1TS	POPTR_0019s08240	POPTR_0019s08240 (11)	scaffold_19:9703215-9704229(-) (11)	NA	Q9XFH9	"Thioredoxin F2, chloroplastic"	AT5G16400.1	thioredoxin F2 	LOC_Os01g68480.1	"thioredoxin, putative, expressed"	Medtr7g089880.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.6708.1.S1_at	A	A1TS	POPTR_0005s27560	POPTR_0005s27560 (11)	scaffold_5:25163046-25163127(-) (11)	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6708.1.S1_x_at	A	A1TS	POPTR_0005s27560	POPTR_0005s27560 (11)	scaffold_5:25163047-25164101(-) (11)	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.671.1.S1_s_at	A	A1TS	POPTR_0014s02980	POPTR_0014s02980 (11)	scaffold_14:2447362-2447624(-) (11)	NA	O15488	Glycogenin-2	AT4G33330.2	plant glycogenin-like starch initiation protein 3 	LOC_Os03g08600.1	"glycosyl transferase, putative, expressed"	Medtr1g024490.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.6710.1.S1_at	A	A2TS	POPTR_0238s00200	POPTR_0238s00200 (11)//POPTR_0014s18770 (10)	scaffold_14:16177594-16178040(+) (10)//scaffold_238:16893-17339(-) (11)	NA	Q9FNC9	Mitochondrial import receptor subunit TOM22 homolog 2	AT5G43970.1	translocase of outer membrane 22-V 	LOC_Os02g29400.1	expressed protein	Medtr1g065560.1	"Mitochondrial import translocase, subunit Tom22 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6711.1.S1_s_at	A	A1TS	POPTR_0014s14200	POPTR_0014s14200 (11)	scaffold_14:10394738-10395213(-) (11)	NA	P51090	Chalcone synthase	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004315|3-oxoacyl-[acyl-carrier-protein] synthase activity	NA
Ptp.6712.1.S1_at	A	A1TS	POPTR_0001s35790	POPTR_0001s35790 (11)	scaffold_1:34142303-34142670(+) (11)	NA	Q4R6F8	T-complex protein 1 subunit beta	AT5G20890.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g42220.1	"T-complex protein, putative, expressed"	Medtr3g024690.1	"Protein kinase; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.6713.1.S1_at	A	A1TS	POPTR_0007s08580	POPTR_0007s08580 (11)	scaffold_7:7425080-7425365(+) (11)	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6713.1.S1_x_at	A	A1TS	POPTR_0007s08580	POPTR_0007s08580 (11)	scaffold_7:7424092-7425364(+) (11)	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6714.2.S1_a_at	A	A1TS	POPTR_0016s13490	POPTR_0016s13490 (11)	scaffold_16:12679358-12681826(+) (11)//scaffold_64:31326-33795(-) (11)	NA	Q9UTE8	Chromatin-remodeling complex subunit ies6	AT4G38495.1	"CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os04g20590.1	"YL1 nuclear protein C-terminal domain containing protein, expressed"	Medtr3g107050.1	"YL1 nuclear, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6715.1.S1_at	A	A2TS	POPTR_0001s42660	POPTR_0001s42660 (11)//POPTR_0128s00210 (11)	scaffold_1:42692987-42693361(-) (11)//scaffold_128:42859-43234(+) (11)	NA	P52758	Ribonuclease UK114	AT3G20390.1	endoribonuclease L-PSP family protein 	LOC_Os07g33240.1	"endoribonuclease, putative, expressed"	Medtr5g100060.1	YjgF-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6716.1.S1_at	A	A1TS	POPTR_0012s11020	POPTR_0012s11020 (10)	scaffold_12:11638961-11640500(-) (10)//scaffold_16:11019364-11019680(-) (10)	NA	P41098	60S ribosomal protein L34	AT1G26880.1	Ribosomal protein L34e superfamily protein 	LOC_Os09g24690.1	"60S ribosomal protein L34, putative, expressed"	Medtr7g009550.1	Ribosomal protein L34e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6717.1.S1_at	A	A1TS	POPTR_0010s02680	POPTR_0010s02680 (10)	scaffold_10:3139405-3139937(-) (10)	NA	B6IN38	50S ribosomal protein L33	AT5G18790.1	Ribosomal protein L33 family protein 	LOC_Os05g37884.1	"50S ribosomal protein L33, putative, expressed"	Medtr1g019620.1	Ribosomal protein L33 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6718.1.S1_s_at	A	A1TS	POPTR_0005s25700	POPTR_0005s25700 (11)	scaffold_5:23913343-23914241(-) (11)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6719.1.S1_at	A	A1TS	POPTR_0004s07630	POPTR_0004s07630 (11)	scaffold_4:6258165-6259148(+) (11)	NA	Q3T100	Microsomal glutathione S-transferase 3	AT1G65820.1	"microsomal glutathione s-transferase, putative "	LOC_Os03g50130.1	"microsomal glutathione S-transferase 3, putative, expressed"	Medtr5g084400.1	Membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6723.1.S1_at	A	A1TS	POPTR_0001s25370	POPTR_0001s25370 (11)	scaffold_1:24518569-24518862(-) (11)	NA	Q9ZW33	Mitochondrial import inner membrane translocase subunit Tim10	AT2G29530.2	Tim10/DDP family zinc finger protein 	LOC_Os03g61019.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr2g117410.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
Ptp.6725.1.S1_s_at	A	A2TS	POPTR_0004s19770	POPTR_0009s14930 (11)//POPTR_0004s19770 (11)	scaffold_4:19524597-19525196(+) (11)//scaffold_9:11595835-11597066(+) (11)	NA	Q65WT0	Protein BUD31 homolog 2	AT4G21110.1	G10 family protein 	LOC_Os05g37390.2	"G10 protein, putative, expressed"	Medtr4g132680.1	G10 protein 	NA	NA	GO:0005634|nucleus
Ptp.6726.1.S1_s_at	A	A1TS	POPTR_0008s05550	POPTR_0008s05550 (11)	scaffold_8:3226917-3228061(+) (11)	NA	Q55C17	"Trans-2,3-enoyl-CoA reductase"	AT3G55360.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os01g05670.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr5g094710.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
Ptp.6727.1.A1_s_at	A	A1TS	POPTR_0006s07470	POPTR_0006s07470 (11)	scaffold_6:5408006-5409373(-) (11)	NA	P81748	Macrophage migration inhibitory factor homolog	AT5G57170.1	Tautomerase/MIF superfamily protein 	LOC_Os06g48600.1	"macrophage migration inhibitory factor, putative, expressed"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6728.1.S1_at	A	A1TS	POPTR_0018s08040	POPTR_0018s08040 (11)	scaffold_18:8817273-8818452(-) (11)	NA	Q8R480	Nuclear pore complex protein Nup85	AT4G32910.1	"CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g54240.1	"nucleoporin, putative, expressed"	Medtr1g008010.1	Nup85 nucleoporin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6729.1.S1_at	A	A1TS	POPTR_0006s07060	POPTR_0006s07060 (11)	scaffold_6:5083921-5084168(+) (11)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g130240.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.673.1.A1_at	A	A1TS	POPTR_0005s06210	POPTR_0005s06210 (9)	scaffold_5:4070869-4071850(-) (9)	NA	NA	NA	AT1G48880.1	TRICHOME BIREFRINGENCE-LIKE 7 	LOC_Os05g35190.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr4g142610.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6731.1.S1_s_at	A	A1TS	POPTR_0005s24800	POPTR_0005s24800 (11)	scaffold_5:23242705-23244359(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6732.1.S1_at	A	A1TS	POPTR_0006s26540	POPTR_0006s26540 (11)	scaffold_6:24728484-24728801(-) (11)	NA	Q9C944	Probable histone H2A variant 3	AT1G52740.1	histone H2A protein 9 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g013390.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.6734.1.S1_s_at	A	A3TS	POPTR_0010s14320	POPTR_0010s14320 (11)//POPTR_0010s14330 (11)//POPTR_0010s14370 (10)	scaffold_10:13976534-13976980(+) (11)//scaffold_10:13982989-13983443(+) (11)//scaffold_10:14004083-14004520(+) (11)	NA	NA	NA	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os01g16120.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g039970.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6736.1.A1_at	A	A1TS	POPTR_0006s13490	POPTR_0006s13490 (11)	scaffold_6:10712053-10712520(+) (11)	NA	Q9LZ03	DNA topoisomerase 6 subunit A	AT5G02820.1	"Spo11/DNA topoisomerase VI, subunit A protein "	LOC_Os03g17610.1	"OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed"	Medtr5g091930.1	"DNA topoisomerase, type II "	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0003824|catalytic activity	GO:0005694|chromosome
Ptp.6738.1.S1_at	A	A1TS	POPTR_0005s25840	POPTR_0005s25840 (11)	scaffold_5:24047231-24047650(-) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT1G75580.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr5g021770.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6740.1.S1_at	A	A1TS	POPTR_0001s28970	POPTR_0001s28970 (11)	scaffold_1:27717767-27718641(+) (11)	NA	NA	NA	AT5G09570.1	Cox19-like CHCH family protein 	LOC_Os03g48080.1	"CHCH domain containing protein, expressed"	Medtr4g121310.2	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6740.1.S1_x_at	A	A1TS	POPTR_0001s28970	POPTR_0001s28970 (11)	scaffold_1:27717539-27718641(+) (11)	NA	NA	NA	AT5G09570.1	Cox19-like CHCH family protein 	LOC_Os03g48080.1	"CHCH domain containing protein, expressed"	Medtr4g121310.2	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6741.2.S1_a_at	A	A1TS	POPTR_0009s04680	POPTR_0009s04680 (11)	scaffold_9:4956888-4957797(-) (11)	NA	NA	NA	AT2G29590.1	Thioesterase superfamily protein 	LOC_Os02g32200.1	"thioesterase family protein, putative, expressed"	Medtr5g078190.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6742.1.S1_at	A	A1TS	POPTR_0014s10300	POPTR_0014s10300 (11)	scaffold_14:7737840-7738564(+) (11)	NA	NA	NA	AT4G01510.1	Arv1-like protein 	LOC_Os03g57090.1	"arv1, putative, expressed"	Medtr7g106480.1	Arv1-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6743.1.A1_at	A	A1TS	POPTR_0002s22410	POPTR_0002s22410 (11)	scaffold_2:19105152-19106643(-) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os10g31950.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6743.1.A1_s_at	A	A1TS	POPTR_0002s22410	POPTR_0002s22410 (11)	scaffold_2:19105449-19106464(-) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os10g31950.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6744.1.S1_at	A	A1TS	POPTR_0014s09260	POPTR_0014s09260 (11)	scaffold_14:6876288-6876627(+) (11)	NA	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6745.1.S1_a_at	A	A1TS	POPTR_0015s06940	POPTR_0015s06940 (11)	scaffold_15:7965775-7967958(-) (11)	NA	Q9SD80	Mitochondrial import receptor subunit TOM5 homolog	AT5G08040.1	mitochondrial import receptor subunit TOM5 homolog 	LOC_Os12g38650.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6746.1.S1_at	A	A1TS	POPTR_0003s04070	POPTR_0003s04070 (11)	scaffold_3:4720647-4722573(-) (11)	NA	O81488	PHD finger protein At5g26210	AT2G02470.1	alfin-like 6 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6748.1.S1_at	A	A1TS	POPTR_0001s05100	POPTR_0001s05100 (9)	scaffold_1:3927287-3928952(+) (9)	NA	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.675.1.A1_at	A	A1TS	POPTR_0004s18130	POPTR_0004s18130 (11)	scaffold_4:18123516-18124464(-) (11)	NA	O22468	WD-40 repeat-containing protein MSI2	AT2G16780.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6751.1.A1_s_at	A	A1TS	POPTR_0016s01620	POPTR_0016s01620 (11)	scaffold_16:737718-738138(+) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6752.1.S1_s_at	A	A1TS	POPTR_0003s00880	POPTR_0003s00880 (11)	scaffold_3:715472-716643(-) (11)	NA	Q9Y6D9	Mitotic spindle assembly checkpoint protein MAD1	AT5G49880.1	mitotic checkpoint family protein 	LOC_Os01g65580.3	"mitotic checkpoint family protein, putative, expressed"	NA	NA	GO:0016032|viral reproduction	NA	NA
Ptp.6753.1.S1_s_at	A	A1TS	POPTR_0006s02780	POPTR_0006s02780 (11)	scaffold_6:1759552-1759997(+) (11)	NA	P36591	Dihydrofolate reductase	AT4G24380.1	"INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g48770.1	"serine hydrolase domain containing protein, expressed"	Medtr7g104240.1	Protein of unknown function DUF341 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6754.1.S1_at	A	A1TS	POPTR_0015s08290	POPTR_0015s08290 (11)	scaffold_15:9555896-9556124(+) (11)//scaffold_968:287-515(+) (11)	NA	Q93X17	Snakin-2	AT5G14920.1	Gibberellin-regulated family protein 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr8g125220.1	"Gonadotropin, beta chain; Gibberellin regulated protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6754.1.S1_s_at	A	A1TS	POPTR_0015s08290	POPTR_0015s08290 (11)	scaffold_15:9555221-9555950(+) (11)	NA	Q93X17	Snakin-2	AT5G14920.1	Gibberellin-regulated family protein 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr8g125220.1	"Gonadotropin, beta chain; Gibberellin regulated protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6755.1.S1_at	A	A1TS	POPTR_0019s11800	POPTR_0019s11800 (10)	scaffold_19:13016840-13016944(-) (10)	NA	NA	NA	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	NA	NA	Medtr3g137680.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.6755.1.S1_x_at	A	A1TS	POPTR_0019s11800	POPTR_0019s11800 (10)	scaffold_19:13016840-13016964(-) (10)	NA	NA	NA	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	NA	NA	Medtr3g137680.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.6756.1.S1_at	A	A1TS	POPTR_0007s02510	POPTR_0007s02510 (11)	scaffold_7:1486968-1487874(-) (11)	NA	O22059	Transcription factor CPC	AT2G46410.1	Homeodomain-like superfamily protein 	LOC_Os01g43180.1	"MYB family transcription factor, putative"	Medtr2g103740.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6757.1.S1_at	A	A1TS	POPTR_0003s14630	POPTR_0003s14630 (11)	scaffold_3:14650720-14651195(-) (11)	NA	P09379	GTPase-activating protein GYP7	AT5G41940.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.6758.1.A1_at	A	A1TS	POPTR_0012s14560	POPTR_0012s14560 (11)	scaffold_12:14415589-14415913(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.6758.1.A1_x_at	A	A1TS	POPTR_0012s14560	POPTR_0012s14560 (11)	scaffold_12:14415507-14415913(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.6759.1.S1_at	A	A1TS	POPTR_0006s11420	POPTR_0006s11420 (11)	scaffold_6:8656926-8656964(-) (11)	NA	Q9M385	"50S ribosomal protein L17, chloroplastic"	AT3G54210.1	Ribosomal protein L17 family protein 	LOC_Os03g60100.1	"50S ribosomal protein L17, putative, expressed"	Medtr3g143710.1	Ribosomal protein L17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6761.1.S1_at	A	A1TS	POPTR_0002s14930	POPTR_0002s14930 (11)	scaffold_2:11045159-11045918(-) (11)	NA	O82531	Proteasome subunit beta type-1	AT3G60820.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os09g32800.1	"peptidase, T1 family, putative, expressed"	Medtr2g117530.1	"20S proteasome, A and B subunits "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.6762.1.S1_at	A	A1TS	POPTR_0001s31210	POPTR_0001s31210 (11)	scaffold_1:29546694-29547125(+) (11)	NA	O22647	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6762.1.S1_x_at	A	A1TS	POPTR_0001s31210	POPTR_0001s31210 (11)	scaffold_1:29546662-29547152(+) (11)	NA	O22647	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6763.1.S1_s_at	A	A1TS	POPTR_0006s01450	POPTR_0006s01450 (11)	scaffold_6:860481-861035(+) (11)//scaffold_6:878757-879315(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6764.1.S1_s_at	A	A1TS	POPTR_0012s06735	POPTR_0012s06735 (11)	scaffold_12:7181484-7181958(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6766.1.S1_s_at	A	A1TS	POPTR_0010s09820	POPTR_0010s09820 (11)	scaffold_10:10442970-10443128(-) (11)	NA	Q8LC83	40S ribosomal protein S24-2	AT5G28060.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6768.1.S1_at	A	A1TS	POPTR_0013s12110	POPTR_0013s12110 (11)	scaffold_13:12763893-12763985(-) (11)	NA	Q5XH16	NHP2-like protein 1	AT4G12600.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os03g13800.1	"ribosomal protein L7Ae, putative, expressed"	Medtr8g119890.1	Ribosomal protein L7AE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.677.1.A1_s_at	A	A1TS	POPTR_0002s03060	POPTR_0002s03060 (11)	scaffold_2:1905612-1907316(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G75500.2	Walls Are Thin 1 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g028570.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.6771.1.S1_s_at	A	A1TS	POPTR_0005s22790	POPTR_0005s22790 (11)	scaffold_5:21688840-21690009(+) (11)	NA	Q9XHS0	40S ribosomal protein S12	AT2G32060.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g12650.3	"ribosomal protein L7Ae, putative, expressed"	Medtr5g012950.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6772.1.A1_x_at	A	A1TS	POPTR_0013s01830	POPTR_0013s01830 (9)	scaffold_13:1051997-1052321(+) (9)	NA	Q3E902	40S ribosomal protein S21-2	AT5G27700.1	Ribosomal protein S21e  	LOC_Os03g46490.1	"40S ribosomal protein S21, putative, expressed"	Medtr7g084190.1	Ribosomal protein S21e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6775.1.S1_at	A	A1TS	POPTR_0007s10780	POPTR_0007s10780 (9)	scaffold_7:10863312-10863613(-) (9)	NA	P47927	Floral homeotic protein APETALA 2	AT4G36920.2	Integrase-type DNA-binding superfamily protein 	LOC_Os04g55560.3	"AP2 domain containing protein, expressed"	Medtr5g016710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.6777.2.S1_s_at	A	A2TS	POPTR_0008s15190	POPTR_0008s15190 (9)//POPTR_0010s09820 (9)	scaffold_10:10445149-10445183(-) (9)//scaffold_8:10163892-10163926(+) (9)	NA	Q8LC83	40S ribosomal protein S24-2	AT5G28060.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6778.1.S1_s_at	A	A1TS	POPTR_0002s23730	POPTR_0002s23730 (11)	scaffold_2:21255096-21255455(+) (11)	NA	P35694	Brassinosteroid-regulated protein BRU1	AT3G23730.1	xyloglucan endotransglucosylase/hydrolase 16 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr3g104510.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.678.1.A1_at	A	A1TS	POPTR_0002s19910	POPTR_0002s19910 (9)	scaffold_2:15851104-15851769(-) (9)	NA	Q6TUG0	DnaJ homolog subfamily B member 11	AT3G62600.1	DNAJ heat shock family protein 	LOC_Os05g06440.1	"dnaJ homolog subfamily B member 11 precursor, putative, expressed"	Medtr7g132750.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.6781.1.S1_s_at	A	A1TS	POPTR_0014s12260	POPTR_0014s12260 (11)	scaffold_14:9053024-9054038(+) (11)	NA	P09012	U1 small nuclear ribonucleoprotein A	AT2G47580.1	spliceosomal protein U1A 	LOC_Os05g06280.1	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr5g082430.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6782.1.S1_a_at	A	A1TS	POPTR_0006s26980	POPTR_0006s26980 (10)	scaffold_6:25004716-25005080(+) (10)	NA	Q8LHH9	Probable RNA-dependent RNA polymerase SHL2	AT3G49500.1	RNA-dependent RNA polymerase 6 	LOC_Os01g34350.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr3g136860.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6782.1.S1_at	A	A1TS	POPTR_0006s26980	POPTR_0006s26980 (9)	scaffold_6:25004533-25004729(+) (9)	NA	Q8LHH9	Probable RNA-dependent RNA polymerase SHL2	AT3G49500.1	RNA-dependent RNA polymerase 6 	LOC_Os01g34350.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr3g136860.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6782.2.S1_a_at	A	A1TS	POPTR_0006s26980	POPTR_0006s26980 (10)	scaffold_6:25004780-25005116(+) (10)	NA	Q8LHH9	Probable RNA-dependent RNA polymerase SHL2	AT3G49500.1	RNA-dependent RNA polymerase 6 	LOC_Os01g34350.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr3g136860.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6786.1.S1_at	A	A1TS	POPTR_0002s14560	POPTR_0002s14560 (11)	scaffold_2:10819810-10821572(-) (11)	NA	Q84WW5	Vesicle-associated protein 1-3	AT4G00170.1	Plant VAMP (vesicle-associated membrane protein) family protein 	LOC_Os08g05890.1	"MSP domain containing protein, expressed"	Medtr5g012520.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
Ptp.6787.1.S1_at	A	A1TS	POPTR_0013s05810	POPTR_0013s05810 (10)	scaffold_13:4195343-4195748(+) (10)	NA	Q3UFM5	Nucleolar MIF4G domain-containing protein 1	AT5G17930.1	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os05g05450.1	"MA3 domain containing protein, expressed"	Medtr7g103040.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
Ptp.6788.1.S1_at	A	A1TS	POPTR_0013s05750	POPTR_0013s05750 (11)	scaffold_13:4121015-4121508(-) (11)	NA	NA	NA	AT5G18260.1	RING/U-box superfamily protein 	LOC_Os03g20980.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g044950.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6789.1.S1_at	A	A1TS	POPTR_0001s12750	POPTR_0001s12750 (10)	scaffold_1:9878422-9878751(+) (10)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os08g42620.2	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.6795.1.S1_at	A	A1TS	POPTR_0005s25090	POPTR_0005s25090 (9)	scaffold_5:23435853-23436514(+) (9)	NA	Q9SU08	Auxilin-related protein 1	AT1G75310.1	auxin-like 1 protein 	LOC_Os05g50370.1	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6796.1.S1_at	A	A1TS	POPTR_0014s16860	POPTR_0014s16860 (9)	scaffold_14:12986515-12987620(+) (9)	NA	NA	NA	AT5G48240.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). 	LOC_Os11g16480.1	"transposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.68.3.S1_s_at	A	A1TS	POPTR_0017s01640	POPTR_0017s01640 (11)	scaffold_17:1175267-1175417(+) (11)//scaffold_96:55383-55533(-) (11)	NA	NA	NA	AT4G25670.2	"unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2). "	LOC_Os06g01770.2	expressed protein	Medtr1g126490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.680.1.A1_at	A	A1TS	POPTR_0006s16000	POPTR_0006s16000 (9)	scaffold_6:13777135-13777251(+) (9)	NA	NA	NA	AT2G03500.1	Homeodomain-like superfamily protein 	LOC_Os01g08160.1	"MYB family transcription factor, putative, expressed"	Medtr8g118880.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6800.1.S1_at	A	A1TS	POPTR_0014s06430	POPTR_0014s06430 (9)	scaffold_14:4886999-4887459(+) (9)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT2G45340.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.6801.1.S1_at	A	A1TS	POPTR_0006s24100	POPTR_0006s24100 (10)	scaffold_6:22777854-22777897(-) (10)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6802.1.S1_s_at	A	A1TS	POPTR_0017s10730	POPTR_0017s10730 (11)	scaffold_17:10244979-10245093(+) (11)	NA	Q7DLS1	Proteasome subunit beta type-7-B	AT5G40580.2	20S proteasome beta subunit PBB2 	LOC_Os05g09490.2	"peptidase, T1 family, putative, expressed"	Medtr7g032520.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.6803.1.S1_at	A	A1TS	POPTR_0018s09270	POPTR_0018s09270 (9)	scaffold_18:10135425-10135879(+) (9)	NA	Q9M080	Ethylene-responsive transcription factor ERF043	AT4G32800.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43970.1	"AP2 domain containing protein, expressed"	Medtr4g159580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.6805.1.S1_at	A	A1TS	POPTR_0009s02650	POPTR_0009s02650 (10)	scaffold_9:3417844-3418391(+) (10)	NA	P46254	"Heat shock 22 kDa protein, mitochondrial"	AT5G51440.1	HSP20-like chaperones superfamily protein 	LOC_Os06g11610.1	"heat shock 22 kDa protein, mitochondrial precursor, putative, expressed"	Medtr7g124360.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6806.1.S1_at	A	A1TS	POPTR_0013s13000	POPTR_0013s13000 (11)	scaffold_13:13578417-13578987(-) (11)	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6806.2.S1_s_at	A	A1TS	POPTR_0013s13000	POPTR_0013s13000 (11)	scaffold_13:13582020-13583885(-) (11)	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6807.1.S1_at	A	A1TS	POPTR_0013s02990	POPTR_0013s02990 (10)	scaffold_13:1816174-1816849(+) (10)	NA	O65759	Histone H2AX	AT1G54690.1	gamma histone variant H2AX 	LOC_Os12g34510.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr7g130040.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.6809.1.S1_at	A	A1MS	POPTR_0008s12830	POPTR_0008s12830 (9)	scaffold_8:8332541-8333051(-) (9)	NA	Q9S7Z8	Auxin efflux carrier component 3	AT1G70940.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.681.1.A1_at	A	A1MS	POPTR_0002s16420	POPTR_0002s16420 (11)	scaffold_2:12281756-12281886(-) (11)	NA	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
Ptp.681.1.A1_s_at	A	A1TS	POPTR_0002s16420	POPTR_0002s16420 (11)	scaffold_2:12281473-12281743(-) (11)	NA	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
Ptp.6811.1.S1_at	A	A1TS	POPTR_0003s16080	POPTR_0003s16080 (9)	scaffold_3:15691547-15692154(+) (9)	NA	Q8VYZ0	E3 ubiquitin-protein ligase ORTHRUS 2	AT1G57820.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01230.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g159770.1	"Zinc finger, RING-type; SRA-YDG; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6813.1.S1_at	A	A1TS	POPTR_0001s37130	POPTR_0001s37130 (11)	scaffold_1:35954711-35955128(+) (11)	NA	NA	NA	AT5G55510.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os12g33020.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr5g101760.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.6816.1.S1_s_at	A	A1TS	POPTR_0018s10340	POPTR_0018s10340 (11)	scaffold_18:11264122-11264433(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.1	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6817.1.A1_at	A	A1TS	POPTR_0001s07310	POPTR_0001s07310 (11)	scaffold_1:5495966-5497528(+) (11)	NA	Q7TQ20	DnaJ homolog subfamily C member 2	AT3G11450.1	DnaJ domain ;Myb-like DNA-binding domain 	LOC_Os04g30890.1	"MYB family transcription factor, putative, expressed"	Medtr7g132840.1	"Heat shock protein DnaJ, N-terminal; Homeodomain-related; "	NA	GO:0031072|heat shock protein binding	NA
Ptp.6818.1.S1_s_at	A	A1TS	POPTR_0002s20250	POPTR_0002s20250 (11)	scaffold_2:16207335-16207490(+) (11)	NA	O46072	Probable ATP-dependent RNA helicase kurz	AT1G33390.1	RNA helicase family protein 	LOC_Os02g50370.1	"helicase domain-containing protein, putative, expressed"	Medtr4g024790.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.6819.1.A1_x_at	A	A1TS	POPTR_0019s13590	POPTR_0019s13590 (11)	scaffold_19:14481238-14484146(-) (11)	NA	NA	NA	AT2G20820.1	unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g38520.1	expressed protein	AC229695_7.1	hypothetical protein AC229695.5 30108-33175 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.682.1.A1_s_at	A	A1TS	POPTR_0010s23690	POPTR_0010s23690 (11)	scaffold_10:20186835-20187153(-) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G04420.3	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g57690.2	"kelch repeat protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6825.1.S1_at	A	A1TS	POPTR_0003s20400	POPTR_0003s20400 (10)	scaffold_3:18910821-18911371(+) (10)	NA	Q8VWG3	Protein TRANSPARENT TESTA 1	AT3G57670.1	C2H2-type zinc finger family protein 	LOC_Os06g40960.1	"ZOS6-05 - C2H2 zinc finger protein, expressed"	Medtr7g110960.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6828.1.A1_at	A	A1TS	POPTR_0001s11620	POPTR_0001s11620 (11)	scaffold_1:9038407-9040676(-) (11)	NA	NA	NA	AT1G80245.3	Spc97 / Spc98 family of spindle pole body (SBP) component 	NA	NA	Medtr8g011930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6829.1.S1_at	A	A1TS	POPTR_0005s17350	POPTR_0005s17350 (11)	scaffold_5:14661198-14661708(-) (11)	NA	Q9THX6	"Thylakoid lumenal 29 kDa protein, chloroplastic"	AT4G09010.1	ascorbate peroxidase 4 	LOC_Os04g51300.1	"peroxidase precursor, putative, expressed"	Medtr5g073820.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.6830.1.S1_at	A	A1TS	POPTR_0011s11140	POPTR_0011s11140 (10)	scaffold_11:13859632-13859824(-) (10)//scaffold_11:13897278-13897470(+) (9)//scaffold_1585:4711-4903(-) (10)//scaffold_1615:2038-2230(+) (9)	NA	P19873	Inhibitor of trypsin and hageman factor	AT5G43580.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr5g097390.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
Ptp.6831.1.S1_s_at	A	A1TS	POPTR_0016s01620	POPTR_0016s01620 (11)	scaffold_16:736867-737123(+) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6833.1.S1_at	A	A1TS	POPTR_0008s04300	POPTR_0008s04300 (9)	scaffold_8:2404597-2406479(-) (9)	NA	Q9ZPV5	Nucleolar complex protein 2 homolog	AT3G55510.1	Noc2p family 	LOC_Os12g06610.1	"nucleolar complex protein 2, putative, expressed"	Medtr1g140790.1	Protein of unknown function UPF0120 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6834.1.S1_at	A	A1TS	POPTR_0016s14020	POPTR_0016s14020 (11)	scaffold_16:13226025-13227220(-) (11)	NA	NA	NA	AT2G40435.1	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g47960.1	"basic helix-loop-helix domain containing protein, expressed"	Medtr5g091250.1	"transcription regulator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6835.1.A1_at	A	A1TS	POPTR_0006s11560	POPTR_0006s11560 (11)	scaffold_6:8762834-8763368(-) (11)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6836.1.S1_at	A	A1TS	POPTR_0015s11130	POPTR_0015s11130 (9)	scaffold_15:11785258-11785624(-) (9)	NA	Q9FYA2	Probable WRKY transcription factor 75	AT5G13080.1	WRKY DNA-binding protein 75 	LOC_Os11g29870.1	"OsWRKY72 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr2g037930.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6838.2.S1_a_at	A	A7TS	POPTR_0001s22830	POPTR_0001s22850 (11)//POPTR_0001s22910 (11)//POPTR_0001s22830 (11)//POPTR_0001s22920 (11)//POPTR_0001s22900 (11)//POPTR_0001s22880 (11)//POPTR_0001s22930 (11)	scaffold_1:21742418-21742457(-) (11)//scaffold_1:21808733-21808772(-) (11)//scaffold_1:21859395-21859434(-) (11)//scaffold_1:21879479-21879518(-) (11)//scaffold_1:21901317-21901356(-) (11)//scaffold_1:21924822-21924861(-) (11)//scaffold_1:21946764-21946803(-) (11)	NA	Q9FSG7	Thaumatin-like protein 1a	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os07g23470.1	"thaumatin, putative, expressed"	Medtr7g124050.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6839.1.A1_at	A	A1TS	POPTR_0004s21630	POPTR_0004s21630 (11)	scaffold_4:20664760-20665083(+) (11)	NA	P54797	Ser/Thr-rich protein T10 in DGCR region	AT4G38260.1	Protein of unknown function (DUF833) 	LOC_Os09g15480.1	"Ser/Thr-rich protein T10 in DGCR region, putative, expressed"	CU651566_13.1	Protein of unknown function DUF833 CU651566.9 80796-76694 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6839.2.S1_at	A	A1TS	POPTR_0004s21630	POPTR_0004s21630 (11)	scaffold_4:20663221-20664652(+) (11)	NA	P54797	Ser/Thr-rich protein T10 in DGCR region	AT4G38260.1	Protein of unknown function (DUF833) 	LOC_Os09g15480.1	"Ser/Thr-rich protein T10 in DGCR region, putative, expressed"	CU651566_13.1	Protein of unknown function DUF833 CU651566.9 80796-76694 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.684.1.A1_x_at	A	A1TS	POPTR_0002s22430	POPTR_0002s22430 (9)	scaffold_2:19165370-19165903(+) (9)	NA	O22466	WD-40 repeat-containing protein MSI1	AT5G58230.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6841.1.S1_at	A	A1TS	POPTR_0004s20120	POPTR_0004s20120 (11)	scaffold_4:19773482-19774705(-) (11)	NA	Q6D2F1	Bifunctional polymyxin resistance protein ArnA	AT1G08200.1	UDP-D-apiose/UDP-D-xylose synthase 2 	LOC_Os01g73790.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g137650.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.6843.1.S1_s_at	A	A1TS	POPTR_0005s27480	POPTR_0005s27480 (11)	scaffold_5:25125972-25126438(+) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os12g17900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.6845.1.S1_at	A	A1TS	POPTR_0010s23200	POPTR_0010s23200 (9)	scaffold_10:19833332-19833864(+) (9)	NA	O27555	Putative arsenical pump-driving ATPase	AT3G10350.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g51100.1	"arsenical pump-driving ATPase, putative, expressed"	Medtr1g120500.1	Anion-transporting ATPase 	GO:0006875|cellular metal ion homeostasis	GO:0005524|ATP binding	NA
Ptp.6846.1.S1_s_at	A	A1TS	POPTR_0004s19680	POPTR_0004s19680 (11)	scaffold_4:19464769-19465064(+) (11)	NA	P41099	60S acidic ribosomal protein P2	AT3G44590.1	60S acidic ribosomal protein family 	LOC_Os05g37330.1	"60S acidic ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6847.1.S1_a_at	A	A4TS	POPTR_0013s10070	POPTR_0013s10070 (11)//POPTR_0013s10080 (11)//POPTR_0279s00200 (11)//POPTR_0013s10090 (11)	scaffold_13:10057597-10057632(-) (11)//scaffold_13:10061036-10061071(-) (11)//scaffold_13:10074302-10074337(-) (11)//scaffold_279:15926-15961(-) (11)	NA	Q15GI4	Eugenol synthase 1	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009470.2	NmrA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6847.1.S1_at	A	A1TS	POPTR_0013s10090	POPTR_0013s10090 (11)	scaffold_13:10044572-10054079(-) (11)//scaffold_13:10054005-10060410(-) (11)//scaffold_13:10073602-10073676(-) (11)	NA	Q15GI4	Eugenol synthase 1	AT4G39230.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009310.1	NmrA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6847.2.S1_s_at	A	A4TS	POPTR_0013s10070	POPTR_0013s10070 (11)//POPTR_0013s10080 (11)//POPTR_0279s00200 (11)//POPTR_0013s10090 (11)	scaffold_13:10047988-10057559(-) (11)//scaffold_13:10054326-10060998(-) (11)//scaffold_13:10073923-10074264(-) (11)//scaffold_279:15444-15888(-) (11)	NA	Q15GI4	Eugenol synthase 1	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009470.2	NmrA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6848.2.S1_s_at	A	A1TS	POPTR_0012s02860	POPTR_0012s02860 (11)	scaffold_12:2316055-2316818(-) (11)	NA	Q8LCW9	60S acidic ribosomal protein P1-1	AT5G24510.1	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6849.2.S1_s_at	A	A1TS	POPTR_0006s02500	POPTR_0006s02500 (11)	scaffold_6:1634053-1634734(-) (11)	NA	Q9LUW5	DEAD-box ATP-dependent RNA helicase 53	AT3G22330.1	putative mitochondrial RNA helicase 2 	LOC_Os07g05050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g097200.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.6850.1.S1_at	A	A1MS	POPTR_0015s05480	POPTR_0015s05480 (11)	scaffold_15:5825648-5825728(+) (11)	NA	NA	NA	AT3G17670.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os04g57780.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g019290.1	Tetratricopeptide-like helical; Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6852.1.S1_s_at	A	A1TS	POPTR_0001s33250	POPTR_0001s33250 (11)	scaffold_1:31448874-31450475(+) (11)	NA	NA	NA	AT1G27435.1	unknown protein; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g005070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6856.1.S1_s_at	A	A1TS	POPTR_0012s03380	POPTR_0012s03380 (11)	scaffold_12:2669784-2669989(+) (11)	NA	Q84W65	"SufE-like protein, chloroplastic"	AT1G55805.1	BolA-like family protein 	LOC_Os03g11990.3	"bolA, putative, expressed"	AC233100_36.1	BolA-like protein; Fe-S metabolism associated SufE AC233100.6 121683-123592 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6857.1.S1_s_at	A	A1TS	POPTR_0009s16730	POPTR_0009s16730 (11)	scaffold_9:12646233-12646800(-) (11)	NA	Q9SFW6	Cyclin-B2-4	AT1G76310.1	CYCLIN B2;4 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.6857.2.S1_s_at	A	A1TS	POPTR_0009s16730	POPTR_0009s16730 (11)	scaffold_9:12647077-12649077(-) (11)	NA	Q9SFW6	Cyclin-B2-4	AT1G76310.1	CYCLIN B2;4 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.6861.1.A1_at	A	A2TS	POPTR_0013s14240	POPTR_0013s14240 (11)//POPTR_0735s00200 (10)	scaffold_13:14517503-14517959(-) (11)//scaffold_735:44-364(-) (10)	POPTR_0019s13610 (6)	Q9SKT6	Probable galacturonosyltransferase 10	AT2G20810.1	galacturonosyltransferase 10 	LOC_Os04g54360.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g018990.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.6862.1.S1_at	A	A1TS	POPTR_0007s11160	POPTR_0007s11160 (10)	scaffold_7:11423865-11424473(+) (10)	NA	NA	NA	AT5G66800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g52490.2	expressed protein	Medtr5g017580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6863.1.S1_at	A	A1TS	POPTR_0001s16850	POPTR_0001s16850 (10)	scaffold_1:13660446-13660889(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g025040.1	"serine rich protein, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6864.1.A1_at	A	A1TS	POPTR_0005s11240	POPTR_0005s11240 (9)	scaffold_5:8144541-8144998(-) (9)	NA	Q9SI03	Metal tolerance protein 12	AT2G04620.1	Cation efflux family protein 	LOC_Os08g32650.1	"cation efflux family protein, putative, expressed"	Medtr7g111990.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
Ptp.6865.1.A1_s_at	A	A1TS	POPTR_0009s04450	POPTR_0009s04450 (11)	scaffold_9:4823755-4826131(-) (11)	NA	Q9ZW33	Mitochondrial import inner membrane translocase subunit Tim10	AT2G29530.2	Tim10/DDP family zinc finger protein 	LOC_Os03g61019.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr2g117410.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
Ptp.6867.1.S1_at	A	A1TS	POPTR_0017s13990	POPTR_0017s13990 (11)	scaffold_17:14169896-14171494(+) (11)	NA	Q0DWQ7	Cyclin-B1-2	AT5G38660.2	acclimation of photosynthesis to  environment 	LOC_Os02g55640.1	"proteasome maturation factor UMP1 family protein, expressed"	Medtr5g008120.1	Proteasome maturation factor UMP1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6869.1.S1_at	A	A1TS	POPTR_0007s01170	POPTR_0007s01170 (11)	scaffold_7:630647-632016(+) (11)	NA	Q9XFD1	Nuclear cap-binding protein subunit 2	AT5G44200.2	CAP-binding protein 20 	LOC_Os02g39890.1	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.687.1.A1_at	A	A1TS	POPTR_0001s37450	POPTR_0001s37450 (11)	scaffold_1:36437097-36437541(-) (11)	NA	NA	NA	AT5G55600.3	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os07g41640.1	"agenet domain-containing protein, putative, expressed"	Medtr2g030390.1	Bromo adjacent region; Xylose isomerase; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
Ptp.6870.1.S1_at	A	A1TS	POPTR_0001s47730	POPTR_0001s47730 (11)	scaffold_1:47889923-47890451(-) (11)	NA	Q8RXZ4	Probable protein phosphatase 2C 18	AT1G79630.1	Protein phosphatase 2C family protein 	LOC_Os08g39100.1	"protein phosphatase 2C, putative, expressed"	Medtr7g089830.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6871.1.S1_at	A	A1TS	POPTR_0007s04620	POPTR_0007s04620 (9)	scaffold_7:2866203-2868535(+) (9)	NA	O65154	RNA polymerase II transcriptional coactivator KIWI	AT5G09250.1	ssDNA-binding transcriptional regulator 	LOC_Os02g34830.1	"tetratricopeptide repeat domain containing protein, expressed"	AC235665_4.1	ssDNA-binding transcriptional regulator AC235665.2 17083-14849 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003713|transcription coactivator activity	NA
Ptp.6872.1.A1_at	A	A1TS	POPTR_0004s17740	POPTR_0004s17740 (11)	scaffold_4:17806367-17806895(-) (11)	NA	Q9LUS2	"Translocase of chloroplast 120, chloroplastic"	AT3G16620.1	translocon outer complex protein 120 	LOC_Os10g40110.1	"GTP binding protein, putative, expressed"	Medtr2g130100.1	AIG1 	NA	GO:0005525|GTP binding	NA
Ptp.6874.1.S1_s_at	A	A2TS	POPTR_0004s09520	POPTR_0004s09520 (11)//POPTR_0004s09540 (11)	scaffold_4:8058669-8058995(+) (11)//scaffold_4:8079206-8079532(+) (11)	POPTR_0004s09530 (7)//POPTR_0004s09570 (7)//POPTR_0004s09550 (6)	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g51660.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.6875.1.S1_s_at	A	A1TS	POPTR_0003s10270	POPTR_0003s10270 (11)	scaffold_3:11319970-11321396(+) (11)	NA	O04066	Acyl-CoA-binding protein	AT1G31812.1	acyl-CoA-binding protein 6 	LOC_Os03g37960.1	"acyl CoA binding protein, putative"	Medtr5g026900.1	"Acyl-coA-binding protein, ACBP "	NA	GO:0000062|acyl-CoA binding	NA
Ptp.6876.1.A1_a_at	A	A1TS	POPTR_0007s04730	POPTR_0007s04730 (11)	scaffold_7:2939308-2939590(-) (11)	NA	NA	NA	AT4G33480.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3727 (InterPro:IPR022203); Has 348 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). 	LOC_Os04g59570.2	expressed protein	Medtr4g143310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6877.1.S1_a_at	A	A1TS	POPTR_0001s27170	POPTR_0001s27170 (11)	scaffold_1:26099127-26099399(+) (11)	NA	Q9BZE9	Tether containing UBX domain for GLUT4	AT3G27310.1	plant UBX domain-containing protein 1 	LOC_Os04g40870.1	"alveolar soft part sarcoma chromosome region, candidate 1, putative, expressed"	Medtr6g024990.1	UBX 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6878.1.S1_s_at	A	A1TS	POPTR_0014s05550	POPTR_0014s05550 (11)	scaffold_14:4149903-4150343(-) (11)	NA	O81908	"Pentatricopeptide repeat-containing protein At1g02060, chloroplastic"	AT1G02060.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g02950.1	"pentatricopeptide, putative, expressed"	Medtr7g041080.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6879.1.S1_x_at	A	A1TS	POPTR_0010s21580	POPTR_0010s21580 (10)	scaffold_10:18803779-18804646(+) (10)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6880.1.S1_at	A	A1TS	POPTR_0004s13455	POPTR_0004s13455 (9)	scaffold_4:13549243-13552921(+) (9)	NA	P64956	Uncharacterized protein Mb2253c	AT3G01410.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g08050.1	"retrotransposon protein, putative, unclassified"	Medtr2g120570.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	GO:0016234|inclusion body
Ptp.6880.2.S1_s_at	A	A1MS	POPTR_0004s13455	POPTR_0004s13455 (11)	scaffold_4:13553994-13554244(+) (11)	NA	P64956	Uncharacterized protein Mb2253c	AT3G01410.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g08050.1	"retrotransposon protein, putative, unclassified"	Medtr2g120570.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	GO:0016234|inclusion body
Ptp.6881.1.S1_at	A	A1TS	POPTR_0010s15800	POPTR_0010s15800 (10)	scaffold_10:14917664-14918784(+) (10)	NA	Q9SEE5	Galactokinase	AT3G06580.1	Mevalonate/galactokinase family protein 	LOC_Os03g61710.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr8g136890.1	GHMP kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.6882.1.A1_s_at	A	A1TS	POPTR_0009s05760	POPTR_0009s05760 (11)	scaffold_9:5766854-5767203(-) (11)	NA	Q9LXV5	Nuclear transcription factor Y subunit A-1	AT5G12840.4	"nuclear factor Y, subunit A1 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.6883.1.A1_at	A	A1TS	POPTR_0009s16540	POPTR_0009s16540 (11)	scaffold_9:12537426-12537958(-) (11)	NA	P27788	"Ferredoxin-3, chloroplastic"	AT2G27510.1	ferredoxin 3 	LOC_Os03g61960.2	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr2g107770.1	"Ferredoxin [2Fe-2S], plant "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.6884.1.S1_at	A	A1TS	POPTR_0010s17940	POPTR_0010s17940 (11)	scaffold_10:16363081-16364568(-) (11)	NA	Q92620	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	AT5G13010.1	RNA helicase family protein 	LOC_Os07g32430.1	"pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed"	Medtr2g117980.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.6885.1.S1_at	A	A1TS	POPTR_0004s13690	POPTR_0004s13690 (11)	scaffold_4:14106705-14108688(-) (11)	NA	P19951	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os04g33750.1	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6887.1.S1_s_at	A	A1TS	POPTR_0014s14580	POPTR_0014s14580 (11)	scaffold_14:10663816-10664275(-) (11)	NA	P73530	30S ribosomal protein S1 homolog A	AT3G23700.1	Nucleic acid-binding proteins superfamily 	LOC_Os03g62780.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g104300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
Ptp.6888.1.S1_s_at	A	A1TS	POPTR_0008s13440	POPTR_0008s13440 (11)	scaffold_8:8833765-8834859(-) (11)	NA	Q8GUU2	E3 ubiquitin protein ligase RIE1	AT1G68070.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os04g48050.1	"RING zinc finger protein, putative, expressed"	Medtr4g157080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6889.1.A1_at	A	A1TS	POPTR_0014s15490	POPTR_0014s15490 (11)	scaffold_14:11541929-11542743(+) (11)	NA	NA	NA	AT1G05060.1	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g13220.1	expressed protein	Medtr5g093280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6890.1.S1_s_at	A	A1TS	POPTR_0006s01620	POPTR_0006s01620 (11)	scaffold_6:996113-996592(+) (11)	NA	O22193	U-box domain-containing protein 4	AT4G16490.1	ARM repeat superfamily protein 	LOC_Os07g39590.1	"spotted leaf 11, putative, expressed"	Medtr2g030200.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6892.1.S1_at	A	A1TS	POPTR_0001s11030	POPTR_0001s11030 (9)	scaffold_1:8554741-8555332(+) (9)	NA	Q8H0V6	ABC transporter F family member 3	AT1G64550.1	general control non-repressible 3 	LOC_Os02g58020.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g109230.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.6893.1.S1_at	A	A1TS	POPTR_0005s24300	POPTR_0005s24300 (11)	scaffold_5:22899476-22899563(-) (11)	NA	Q9M2J9	Bet1-like SNARE 1-1	AT3G58170.1	BET1P/SFT1P-like protein 14A 	LOC_Os02g57510.2	"SNARE domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6893.1.S1_s_at	A	A1TS	POPTR_0005s24300	POPTR_0005s24300 (11)	scaffold_5:22899584-22899703(-) (11)	NA	Q9M2J9	Bet1-like SNARE 1-1	AT3G58170.1	BET1P/SFT1P-like protein 14A 	LOC_Os02g57510.2	"SNARE domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6893.2.S1_s_at	A	A1MS	POPTR_0005s24300	POPTR_0005s24300 (10)	scaffold_5:22899736-22903064(-) (10)	NA	Q9M2J9	Bet1-like SNARE 1-1	AT3G58170.1	BET1P/SFT1P-like protein 14A 	LOC_Os02g57510.2	"SNARE domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6894.1.S1_at	A	A1MS	POPTR_0007s08080	POPTR_0007s08080 (10)	scaffold_7:6574301-6574827(-) (10)	NA	Q9SMZ2	Pentatricopeptide repeat-containing protein At4g33170	AT1G16480.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os11g45410.1	conserved hypothetical protein	Medtr3g028620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6895.1.S1_at	A	A1TS	POPTR_0017s12680	POPTR_0017s12680 (10)	scaffold_17:12879329-12879839(-) (10)	NA	NA	NA	AT3G29310.1	calmodulin-binding protein-related 	LOC_Os05g43670.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr7g012190.1	IQ calmodulin-binding region 	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.6896.1.A1_at	A	A1TS	POPTR_0004s20530	POPTR_0004s20530 (11)	scaffold_4:20051468-20051901(+) (11)	NA	Q6P8B3	Speckle-type POZ protein	AT3G03740.1	BTB-POZ and MATH domain 4 	LOC_Os03g57854.1	"MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr5g094610.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
Ptp.6897.1.S1_s_at	A	A1TS	POPTR_0003s16420	POPTR_0003s16420 (11)	scaffold_3:15999249-15999427(-) (11)	NA	NA	NA	AT2G33510.1	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). 	LOC_Os02g31140.1	"major ampullate spidroin 2-2, putative, expressed"	Medtr7g005170.1	WW/Rsp5/WWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6898.1.A1_at	A	A1TS	POPTR_0003s02550	POPTR_0003s02550 (11)	scaffold_3:2651809-2652195(+) (11)	NA	Q9S793	Protein FAR1-RELATED SEQUENCE 8	AT1G80010.1	FAR1-related sequence 8 	LOC_Os02g39540.1	"transposon protein, putative, unclassified, expressed"	Medtr2g034270.1	"FAR1; Heavy metal transport/detoxification protein; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.6899.1.S1_at	A	A1TS	POPTR_0009s09330	POPTR_0009s09330 (10)	scaffold_9:8303808-8304144(+) (10)	NA	Q9UBN7	Histone deacetylase 6	AT2G14830.2	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os12g32374.1	"histone deacetylase 6, putative, expressed"	Medtr5g005200.1	"Histone deacetylase superfamily; Zinc finger, UBP-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.6900.1.S1_s_at	A	A1TS	POPTR_0001s06750	POPTR_0001s06750 (10)	scaffold_1:5182157-5182416(+) (11)	NA	Q0WVD6	Probable protein arginine N-methyltransferase 3	AT3G12270.1	protein arginine methyltransferase 3 	LOC_Os07g44640.1	"ZOS7-13 - C2H2 zinc finger protein, expressed"	Medtr3g005500.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.6901.1.S1_at	A	A1TS	POPTR_0011s11040	POPTR_0011s11040 (11)	scaffold_11:13728685-13728826(+) (11)	NA	NA	NA	AT1G16916.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6901.1.S1_s_at	A	A1TS	POPTR_0011s11040	POPTR_0011s11040 (11)	scaffold_11:13728451-13728684(+) (11)	NA	NA	NA	AT1G16916.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6902.1.S1_at	A	A1TS	POPTR_0001s30460	POPTR_0001s30460 (11)	scaffold_1:28913466-28913697(-) (11)	NA	O74503	Upstream activation factor subunit spp27	AT2G14880.1	SWIB/MDM2 domain superfamily protein 	LOC_Os12g32280.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6902.1.S1_x_at	A	A1TS	POPTR_0001s30460	POPTR_0001s30460 (11)	scaffold_1:28913466-28913697(-) (11)	NA	O74503	Upstream activation factor subunit spp27	AT2G14880.1	SWIB/MDM2 domain superfamily protein 	LOC_Os12g32280.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6904.1.S1_at	A	A1TS	POPTR_0015s04510	POPTR_0015s04510 (11)	scaffold_15:4632242-4632422(-) (11)	NA	P50699	Thaumatin-like protein	AT1G73620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os06g47600.1	"thaumatin family domain containing protein, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6904.1.S1_s_at	A	A1TS	POPTR_0015s04510	POPTR_0015s04510 (11)	scaffold_15:4631987-4632333(-) (11)	NA	P50699	Thaumatin-like protein	AT1G73620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os06g47600.1	"thaumatin family domain containing protein, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6905.1.A1_s_at	A	A1TS	POPTR_0001s44050	POPTR_0001s44050 (9)	scaffold_1:44504508-44507783(+) (11)	NA	Q43472	Glycine-rich RNA-binding protein blt801	AT5G54580.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g04440.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g118370.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6906.1.A1_x_at	A	A1TS	POPTR_0001s37560	POPTR_0001s37560 (11)	scaffold_1:36537690-36537786(-) (11)	NA	NA	NA	AT3G13175.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.691.1.S1_s_at	A	A1TS	POPTR_0019s13040	POPTR_0019s13040 (11)	scaffold_19:14053882-14054439(+) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6910.1.S1_at	A	A1TS	POPTR_0009s14560	POPTR_0009s14560 (9)	scaffold_9:11387547-11388426(+) (9)	NA	NA	NA	AT4G38380.1	MATE efflux family protein 	LOC_Os09g37610.1	"MATE efflux protein, putative, expressed"	Medtr5g106650.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
Ptp.6911.1.S1_s_at	A	A1TS	POPTR_0010s23720	POPTR_0010s23720 (11)	scaffold_10:20224397-20224545(+) (11)	NA	P93354	Histone H2B	AT3G53650.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6915.1.S1_at	A	A1TS	POPTR_0012s03000	POPTR_0012s03000 (11)	scaffold_12:2424749-2424971(-) (11)	NA	NA	NA	AT5G53650.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr3g123140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6917.1.A1_s_at	A	A1TS	POPTR_0015s09620	POPTR_0015s09620 (11)	scaffold_15:10790123-10790594(-) (11)	NA	P49689	40S ribosomal protein S30	AT5G56670.1	Ribosomal protein S30 family protein 	LOC_Os06g07580.2	expressed protein	Medtr5g012690.1	Ribosomal protein S30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6919.1.S1_x_at	A	A1TS	POPTR_0005s08250	POPTR_0005s08250 (11)	scaffold_5:5682920-5684762(+) (11)	NA	O49884	60S ribosomal protein L30	AT1G77940.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.692.1.A1_at	A	A1TS	POPTR_0010s01710	POPTR_0010s01710 (11)	scaffold_10:1905233-1906258(+) (11)	NA	Q922S8	Kinesin-like protein KIF2C	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g06280.2	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr8g138640.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.6921.1.S1_s_at	A	A1TS	POPTR_0002s04410	POPTR_0002s04410 (11)	scaffold_2:2762889-2763293(-) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.6922.1.S1_s_at	A	A1TS	POPTR_0008s23110	POPTR_0008s23110 (11)	scaffold_8:18365739-18366163(-) (11)	NA	O50001	Major allergen Pru ar 1	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.6923.1.S1_a_at	A	A1TS	POPTR_0001s26230	POPTR_0001s26230 (11)	scaffold_1:25286379-25288130(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g104160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6926.1.A1_at	A	A1TS	POPTR_0001s28020	POPTR_0001s28020 (11)	scaffold_1:26822913-26825032(-) (11)	NA	Q55DL0	Dihydropyrimidinase	AT5G12200.1	pyrimidine 2 	LOC_Os01g59340.3	"dihydropyrimidinase, putative, expressed"	Medtr5g096300.1	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
Ptp.6927.1.A1_at	A	A1TS	POPTR_0005s07440	POPTR_0005s07440 (11)	scaffold_5:5087266-5087408(+) (11)	NA	O14327	Polyadenylate-binding protein 2	AT5G10350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g120660.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.6928.1.A1_at	A	A1TS	POPTR_0009s17050	POPTR_0009s17050 (11)	scaffold_9:12842622-12843029(+) (11)	NA	Q9SZM1	Expansin-A20	AT4G38210.1	expansin A20 	LOC_Os06g41700.1	"expansin precursor, putative, expressed"	Medtr5g083140.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6928.2.S1_s_at	A	A1TS	POPTR_0008s10620	POPTR_0008s10620 (11)	scaffold_8:6647541-6648064(-) (11)	NA	P24068	Ocs element-binding factor 1	AT3G62420.1	basic region/leucine zipper motif 53 	LOC_Os12g37415.1	expressed protein	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.6929.2.S1_a_at	A	A1TS	POPTR_0011s01520	POPTR_0011s01520 (11)	scaffold_11:1064891-1065327(+) (11)	NA	NA	NA	AT4G04330.1	Chaperonin-like RbcX protein 	LOC_Os08g32930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.693.1.A1_at	A	A1TS	POPTR_0006s09370	POPTR_0006s09370 (9)	scaffold_6:6883697-6884023(-) (9)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G02010.1	RHO guanyl-nucleotide exchange factor 7 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
Ptp.6930.1.S1_at	A	A1TS	POPTR_0018s05010	POPTR_0018s05010 (11)	scaffold_18:4438339-4439304(-) (11)	NA	Q8UVD9	Far upstream element-binding protein 2	AT2G25970.1	KH domain-containing protein 	LOC_Os02g13130.1	"KH domain-containing protein, putative, expressed"	Medtr1g020830.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.6931.1.S1_s_at	A	A1TS	POPTR_0014s03630	POPTR_0014s03630 (11)	scaffold_14:2896597-2896911(+) (11)	NA	NA	NA	AT2G26500.1	"cytochrome b6f complex subunit (petM), putative "	LOC_Os03g55720.2	"cytochrome b6f complex subunit, putative, expressed"	NA	NA	NA	NA	GO:0009512|cytochrome b6f complex
Ptp.6932.1.A1_s_at	A	A1TS	POPTR_0001s35760	POPTR_0001s35760 (11)	scaffold_1:34111150-34112198(+) (11)	NA	Q8VYR5	"Pentatricopeptide repeat-containing protein At4g35850, mitochondrial"	AT4G35850.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g05320.1	"PPR repeat domain containing protein, putative, expressed"	Medtr6g022770.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6933.1.S1_s_at	A	A1TS	POPTR_0014s17730	POPTR_0014s17730 (9)	scaffold_14:14000337-14001610(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6941.2.S1_s_at	A	A1TS	POPTR_0003s16880	POPTR_0003s16880 (11)	scaffold_3:16397125-16399001(+) (11)	NA	NA	NA	AT1G27290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g32960.1	expressed protein	Medtr3g104180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6942.1.S1_a_at	A	A1TS	POPTR_0013s15500	POPTR_0013s15500 (11)	scaffold_13:15450247-15450458(-) (11)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.6942.2.S1_a_at	A	A1TS	POPTR_0013s15500	POPTR_0013s15500 (10)	scaffold_13:15450283-15450949(-) (10)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.6943.1.S1_at	A	A1TS	POPTR_0011s05620	POPTR_0011s05620 (11)	scaffold_11:5596813-5597208(-) (11)	NA	NA	NA	AT2G33847.2	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017890.1	"NFD6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6943.2.S1_at	A	A1TS	POPTR_0011s05620	POPTR_0011s05620 (11)	scaffold_11:5597480-5597958(-) (11)	NA	NA	NA	AT2G33847.2	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017890.1	"NFD6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6943.3.S1_a_at	A	A1TS	POPTR_0011s05620	POPTR_0011s05620 (11)	scaffold_11:5598431-5598570(-) (11)	NA	NA	NA	AT2G33847.2	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017890.1	"NFD6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6943.3.S1_at	A	A1TS	POPTR_0011s05620	POPTR_0011s05620 (11)	scaffold_11:5596464-5598332(-) (11)	NA	NA	NA	AT2G33847.2	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017890.1	"NFD6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6945.1.S1_at	A	A1TS	POPTR_0019s08090	POPTR_0019s08090 (11)	scaffold_19:9510469-9511210(+) (11)	NA	O48965	Isopentenyl-diphosphate Delta-isomerase II	AT3G02780.1	isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 	LOC_Os05g34180.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr7g089700.1	"Isopentenyl-diphosphate delta-isomerase, type 1 "	NA	GO:0016787|hydrolase activity	NA
Ptp.6946.1.S1_s_at	A	A1TS	POPTR_0008s17100	POPTR_0008s17100 (11)	scaffold_8:11491005-11491247(-) (11)	NA	Q03389	Eukaryotic translation initiation factor 4E-2	AT5G35620.1	Eukaryotic initiation factor 4E protein 	LOC_Os10g32970.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr1g065250.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.6948.1.S1_at	A	A1TS	POPTR_0009s11240	POPTR_0009s11240 (11)	scaffold_9:9397970-9398330(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.695.1.S1_s_at	A	A1TS	POPTR_0012s04590	POPTR_0012s04590 (11)	scaffold_12:3908424-3909117(+) (11)	NA	Q9LV37	Mitogen-activated protein kinase 9	AT3G18040.1	MAP kinase 9 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6950.1.S1_at	A	A1MS	POPTR_0009s09440	POPTR_0009s09440 (11)	scaffold_9:8356814-8357191(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6951.1.S1_at	A	A1TS	POPTR_0014s02920	POPTR_0014s02920 (11)	scaffold_14:2410231-2411444(-) (11)	NA	Q9C5C5	"Thioredoxin-like 4, chloroplastic"	AT1G07700.1	Thioredoxin superfamily protein 	LOC_Os02g35900.1	"thioredoxin, putative, expressed"	Medtr3g147750.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.6952.1.S1_at	A	A1TS	POPTR_0015s04470	POPTR_0015s04470 (10)	scaffold_15:4613539-4614009(-) (10)	NA	Q9LE22	Probable calcium-binding protein CML27	AT1G18210.2	Calcium-binding EF-hand family protein 	LOC_Os05g13580.1	"OsCML18 - Calmodulin-related calcium sensor protein, expressed"	Medtr4g155110.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6953.1.S1_at	A	A1TS	POPTR_0001s02630	POPTR_0001s02630 (10)	scaffold_1:2076683-2077265(-) (10)	NA	NA	NA	AT1G32560.1	"Late embryogenesis abundant protein, group 1 protein "	NA	NA	Medtr8g102760.1	Late embryogenesis abundant (LEA) group 1 	GO:0009790|embryonic development	NA	NA
Ptp.6956.1.S1_at	A	A1TS	POPTR_0002s02590	POPTR_0002s02590 (11)	scaffold_2:1490810-1491237(+) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT1G75580.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr5g021770.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6957.1.S1_a_at	A	A1TS	POPTR_0005s24980	POPTR_0005s24980 (11)	scaffold_5:23371827-23372111(+) (11)	NA	Q940Z1	Pentatricopeptide repeat-containing protein At1g19525	AT1G19520.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os02g39820.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g112280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6958.1.S1_s_at	A	A1TS	POPTR_0014s14300	POPTR_0014s14300 (10)	scaffold_14:10457329-10457862(-) (10)	NA	Q0WW21	Anthocyanin 5-O-glucosyltransferase	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6959.1.S1_at	A	A1TS	POPTR_0015s12260	POPTR_0015s12260 (11)	scaffold_15:12596406-12596884(+) (11)	NA	NA	NA	AT4G17600.1	Chlorophyll A-B binding family protein 	LOC_Os02g03330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.696.1.A1_at	A	A1TS	POPTR_0010s17160	POPTR_0010s17160 (11)	scaffold_10:15877197-15878216(+) (11)	NA	NA	NA	AT1G13990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g07190.1	expressed protein	Medtr5g045550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6962.1.S1_at	A	A1TS	POPTR_0005s08150	POPTR_0005s08150 (11)	scaffold_5:5607285-5607628(+) (11)	NA	Q9SCY3	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplastic"	AT4G39710.1	FK506-binding protein 16-2 	LOC_Os02g51570.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g140460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.6962.1.S1_s_at	A	A1TS	POPTR_0005s08150	POPTR_0005s08150 (11)	scaffold_5:5606635-5607533(+) (11)	NA	Q9SCY3	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplastic"	AT4G39710.1	FK506-binding protein 16-2 	LOC_Os02g51570.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g140460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.6965.1.S1_s_at	A	A1TS	POPTR_0010s19380	POPTR_0010s19380 (11)	scaffold_10:17316334-17316528(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6966.1.S1_s_at	A	A1TS	POPTR_0017s08890	POPTR_0017s08890 (11)	scaffold_17:7517262-7518371(-) (11)	NA	NA	NA	AT5G14030.4	translocon-associated protein beta (TRAPB) family protein 	LOC_Os01g01307.1	"translocon-associated protein beta domain containing protein, expressed"	Medtr7g096580.1	Translocon-associated beta 	NA	NA	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
Ptp.6967.1.S1_x_at	A	A1TS	POPTR_0012s08850	POPTR_0012s08850 (11)	scaffold_12:9921475-9922063(+) (11)	NA	P49689	40S ribosomal protein S30	AT5G56670.1	Ribosomal protein S30 family protein 	LOC_Os06g07580.2	expressed protein	Medtr5g012690.1	Ribosomal protein S30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6968.1.A1_at	A	A1TS	POPTR_0009s13380	POPTR_0009s13380 (11)	scaffold_9:10661068-10661603(-) (11)	NA	Q9SLF3	"Translocase of chloroplast 132, chloroplastic"	AT3G16620.1	translocon outer complex protein 120 	LOC_Os10g40110.1	"GTP binding protein, putative, expressed"	Medtr2g130100.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6969.1.S1_at	A	A1TS	POPTR_0008s11120	POPTR_0008s11120 (9)	scaffold_8:7025420-7025511(-) (9)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os09g29930.2	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.697.1.A1_s_at	A	A1TS	POPTR_0002s14200	POPTR_0002s14200 (11)	scaffold_2:10523701-10523832(+) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os02g43930.1	"chaperone protein dnaJ, putative, expressed"	Medtr8g006170.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.6971.1.S1_at	A	A1MS	POPTR_0001s04780	POPTR_0001s04780 (9)	scaffold_1:3678944-3679366(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6973.1.S1_s_at	A	A1TS	POPTR_0010s07710	POPTR_0010s07710 (11)	scaffold_10:8695466-8695986(-) (11)	NA	NA	NA	AT4G26740.1	seed gene 1 	LOC_Os04g43170.1	"caleosin related protein, putative, expressed"	AC233676_20.1	Caleosin related AC233676.2 83014-79445 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6974.1.S1_at	A	A1TS	POPTR_0016s09350	POPTR_0016s09350 (11)	scaffold_16:7350050-7350283(+) (11)	NA	Q9LVV5	"Thylakoid lumenal 15.0 kDa protein 2, chloroplastic"	AT5G52970.1	thylakoid lumen 15.0 kDa protein 	LOC_Os07g34950.1	"uncharacterized membrane protein, putative, expressed"	Medtr5g038350.1	"Uncharacterized membrane protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6976.1.S1_at	A	A1MS	POPTR_0001s12360	POPTR_0001s12360 (9)	scaffold_1:9571642-9574868(-) (9)	NA	NA	NA	AT5G44650.1	Encodes a chloroplast protein that induces tolerance to multiple environmental stresses and reduces photooxidative damage. 	LOC_Os01g58470.1	expressed protein	Medtr8g084190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6977.1.S1_s_at	A	A2TS	POPTR_0019s01840	POPTR_0019s01850 (11)//POPTR_0019s01840 (11)	scaffold_19:1590929-1591305(+) (11)//scaffold_19:1606860-1607240(+) (11)	NA	P09800	Legumin B	AT5G44120.3	RmlC-like cupins superfamily protein 	LOC_Os01g55690.1	"glutelin, putative, expressed"	Medtr1g086770.1	11-S plant seed storage protein 	NA	GO:0045735|nutrient reservoir activity	NA
Ptp.6978.1.A1_at	A	A1TS	POPTR_0012s08690	POPTR_0012s08690 (9)	scaffold_12:9800735-9801270(+) (9)	NA	NA	NA	AT5G63130.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os11g25780.1	"PB1 domain containing protein, expressed"	Medtr3g114750.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6979.1.S1_s_at	A	A1TS	POPTR_0002s01290	POPTR_0002s01290 (11)	scaffold_2:677455-677784(+) (11)	NA	NA	NA	AT1G76240.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os06g50980.1	conserved hypothetical protein	Medtr5g023250.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.698.1.A1_at	A	A1TS	POPTR_0011s01570	POPTR_0011s01570 (11)	scaffold_11:1101151-1101605(-) (11)	NA	NA	NA	AT4G22140.2	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os09g21770.1	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
Ptp.6981.1.S1_at	A	A1TS	POPTR_0014s05870	POPTR_0014s05870 (9)	scaffold_14:4391970-4392344(+) (10)	NA	Q8RW93	Putative lipid-binding protein At4g00165	AT4G00165.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g01320.1	"LTPL116 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr1g014100.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6982.1.S1_s_at	A	A1TS	POPTR_0016s00910	POPTR_0016s00910 (10)	scaffold_16:351098-351831(-) (11)	NA	NA	NA	AT3G13130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6983.1.S1_s_at	A	A1TS	POPTR_0010s15220	POPTR_0010s15220 (10)	scaffold_10:14560962-14561671(+) (10)	NA	NA	NA	AT4G16160.2	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os03g19290.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr8g137810.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.6984.1.S1_at	A	A1TS	POPTR_0001s08230	POPTR_0001s08230 (11)	scaffold_1:6283583-6286725(-) (11)	NA	Q55720	Ycf49-like protein	AT4G22830.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). 	LOC_Os04g31010.2	expressed protein	Medtr5g011600.1	"Ycf49-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6985.1.S1_at	A	A1TS	POPTR_0010s07470	POPTR_0010s07470 (9)	scaffold_10:8517688-8518280(-) (9)	NA	NA	NA	AT1G04560.1	AWPM-19-like family protein 	LOC_Os07g24000.1	"AWPM-19-like membrane family protein, putative, expressed"	Medtr6g084000.1	AWPM-19-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6986.1.S1_at	A	A1MS	POPTR_0001s19160	POPTR_0001s19160 (10)	scaffold_1:16584087-16584643(-) (10)	NA	NA	NA	AT5G56550.1	oxidative stress 3 	LOC_Os02g13370.1	expressed protein	Medtr4g160080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.699.1.S1_at	A	A1MS	POPTR_0002s16470	POPTR_0002s16470 (11)	scaffold_2:12327431-12327970(-) (11)	NA	O46036	C-terminal-binding protein	AT1G01510.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g38900.1	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr7g088700.1	"D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0048037|cofactor binding"	NA
Ptp.6992.1.S1_at	A	A1TS	POPTR_0006s12610	POPTR_0006s12610 (11)	scaffold_6:9767897-9769112(-) (11)	NA	B0BLT0	Zinc finger protein 593	AT2G36930.1	zinc finger (C2H2 type) family protein 	LOC_Os08g45040.1	"zinc finger protein 593, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
Ptp.6994.1.S1_s_at	A	A1TS	POPTR_0009s01580	POPTR_0009s01580 (11)	scaffold_9:2054700-2054979(+) (11)	NA	Q6P0I8	Exosome complex exonuclease MTR3	AT4G27490.1	3'-5'-exoribonuclease family protein 	LOC_Os03g62720.1	"exosome complex exonuclease, putative, expressed"	AC233683_7.2	3 exoribonuclease AC233683.2 46787-40903 F EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
Ptp.6996.1.S1_at	A	A1TS	POPTR_0006s10130	POPTR_0006s10130 (10)	scaffold_6:7536075-7536174(+) (10)	NA	Q39963	Probable pyridoxal biosynthesis protein PDX1	AT5G01410.1	Aldolase-type TIM barrel family protein 	LOC_Os07g01020.1	"SOR/SNZ family protein, putative, expressed"	Medtr2g021510.1	Vitamin B6 biosynthesis protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6999.1.S1_at	A	A1TS	POPTR_0002s15180	POPTR_0002s15180 (11)	scaffold_2:11341125-11341583(+) (11)	NA	NA	NA	AT1G08500.1	early nodulin-like protein 18 	LOC_Os12g26880.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr7g083320.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.7.1.S1_at	A	A1TS	POPTR_0002s03990	POPTR_0002s03990 (11)	scaffold_2:2502609-2504460(+) (11)	NA	Q9ZSK2	Actin-depolymerizing factor 6	AT2G31200.1	actin depolymerizing factor 6 	LOC_Os12g43340.1	"actin-depolymerizing factor, putative, expressed"	AC233662_56.1	"Actin-binding, cofilin/tropomyosin type AC233662.1 257418-259371 F EGN_Mt090430 200"	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.70.1.A1_at	A	A1TS	POPTR_0018s08910	POPTR_0018s08910 (11)	scaffold_18:9821119-9822471(-) (11)	NA	P28734	"Aspartate aminotransferase, cytoplasmic"	AT5G19550.1	aspartate aminotransferase 2 	LOC_Os01g55540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.700.1.A1_at	A	A1TS	POPTR_0004s02940	POPTR_0004s02940 (11)	scaffold_4:1966093-1966500(+) (11)	NA	Q9LK57	"Pentatricopeptide repeat-containing protein At3g13160, mitochondrial"	AT3G13160.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g57630.3	"pentatricopeptide containing protein, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7000.1.S1_at	A	A1TS	POPTR_0015s05550	POPTR_0015s05550 (9)	scaffold_15:5877567-5878527(-) (9)	NA	Q6EU14	Protein argonaute 1A	AT1G48410.1	Stabilizer of iron transporter SufD / Polynucleotidyl transferase 	LOC_Os02g45070.1	"PINHEAD, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7001.1.S1_at	A	A3TS	POPTR_0019s12380	POPTR_0019s12380 (11)//POPTR_0019s12390 (11)//POPTR_0019s12370 (10)	scaffold_19:13410876-13410909(-) (10)//scaffold_19:13421732-13421766(-) (11)//scaffold_19:13434869-13434903(-) (11)	NA	P27054	Endochitinase PR4	AT3G54420.1	homolog of carrot EP3-3 chitinase 	LOC_Os04g41680.1	"CHIT3 - Chitinase family protein precursor, expressed"	Medtr2g120640.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
Ptp.7006.1.S1_at	A	A1TS	POPTR_0011s14360	POPTR_0011s14360 (10)	scaffold_11:16806499-16806916(-) (10)	NA	Q8W4Z5	UPF0497 membrane protein f16	AT1G17200.1	Uncharacterised protein family (UPF0497) 	LOC_Os04g21320.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr5g084410.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7012.1.S1_at	A	A1TS	POPTR_0010s10600	POPTR_0010s10600 (11)	scaffold_10:11088767-11089299(+) (11)	NA	Q93VR4	MLP-like protein 423	AT1G24020.2	MLP-like protein 423 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr5g036270.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.7013.1.S1_at	A	A1TS	POPTR_0001s03660	POPTR_0001s03660 (9)	scaffold_1:2917490-2917768(-) (9)//scaffold_1:2933162-2933440(-) (9)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G15950.1	cinnamoyl coa reductase 1 	LOC_Os08g34280.1	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.7013.2.S1_at	A	A1TS	POPTR_0001s14970	POPTR_0001s14970 (11)	scaffold_1:11790092-11790270(+) (11)//scaffold_1:11806168-11806342(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G15950.1	cinnamoyl coa reductase 1 	LOC_Os08g34280.1	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.7015.1.S1_s_at	A	A1TS	POPTR_0001s41340	POPTR_0001s41340 (11)	scaffold_1:40974340-40975009(+) (11)	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g58170.1	"stem-specific protein TSJT1, putative, expressed"	Medtr2g014830.1	"Stem-specific protein TSJT1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7016.1.S1_at	A	A1TS	POPTR_0002s24680	POPTR_0002s24680 (10)	scaffold_2:21973267-21973535(+) (10)	NA	Q8GYN5	RPM1-interacting protein 4	AT3G25070.1	RPM1 interacting protein 4 	LOC_Os03g63140.2	"nitrate-induced NOI protein, expressed"	Medtr2g029230.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7017.1.S1_a_at	A	A1TS	POPTR_0017s12080	POPTR_0017s12080 (11)	scaffold_17:12238195-12238731(+) (11)	NA	Q93ZL5	Dof zinc finger protein DOF5.2	AT5G39660.2	cycling DOF factor 2 	LOC_Os03g07360.1	expressed protein	Medtr7g010180.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.7018.1.S1_at	A	A1TS	POPTR_0011s17250	POPTR_0011s17250 (11)	scaffold_11:18848692-18849214(+) (11)	NA	Q9FH13	Regulator of ribonuclease-like protein 3	AT5G56260.1	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os02g52450.3	"regulator of ribonuclease, putative, expressed"	Medtr2g010880.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7019.1.S1_at	A	A1TS	POPTR_0017s11430	POPTR_0017s11430 (9)	scaffold_17:11186515-11186547(-) (9)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT3G01280.1	voltage dependent anion channel 1 	LOC_Os09g19734.3	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr7g008680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.7019.1.S1_s_at	A	A1TS	POPTR_0017s11430	POPTR_0017s11430 (11)	scaffold_17:11186406-11186736(-) (11)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT3G01280.1	voltage dependent anion channel 1 	LOC_Os09g19734.3	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr7g008680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.702.1.S1_a_at	A	A1TS	POPTR_0001s13890	POPTR_0001s13890 (11)	scaffold_1:10947232-10947279(-) (11)	NA	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7021.1.S1_s_at	A	A1TS	POPTR_0016s05190	POPTR_0016s05190 (11)	scaffold_16:3149632-3150054(+) (11)	NA	NA	NA	AT2G42310.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g31260.1	expressed protein	Medtr1g071470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7024.1.S1_s_at	A	A1TS	POPTR_0007s05380	POPTR_0007s05380 (11)	scaffold_7:3474125-3477447(-) (11)	NA	Q9FJP3	"50S ribosomal protein L29, chloroplastic"	AT5G65220.1	Ribosomal L29 family protein  	LOC_Os02g51790.1	"ribosomal protein L29, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7025.3.S1_s_at	A	A1TS	POPTR_0008s01770	POPTR_0008s01770 (11)	scaffold_8:838756-838790(-) (11)	NA	NA	NA	AT5G04750.1	"F1F0-ATPase inhibitor protein, putative "	LOC_Os02g33070.1	expressed protein	AC233577_44.1	hypothetical protein AC233577.5 201575-203831 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7026.1.S1_s_at	A	A3TS	POPTR_0015s12680	POPTR_0015s12680 (11)//POPTR_0015s15850 (11)//POPTR_0015s15830 (10)	scaffold_15:12910100-12910343(+) (11)//scaffold_15:15021153-15026577(-) (11)//scaffold_15:15026415-15026658(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr2g008080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7027.1.S1_at	A	A1TS	POPTR_0018s00800	POPTR_0018s00800 (9)	scaffold_18:697529-697918(-) (10)	NA	Q8GZ63	Pentatricopeptide repeat-containing protein At5g25630	AT5G25630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g12810.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g009410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.703.1.S1_at	A	A1TS	POPTR_0002s11380	POPTR_0002s11380 (10)	scaffold_2:8413653-8414203(+) (10)	NA	O69230	"Endo-1,4-beta-xylanase C"	AT1G58370.1	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein 	LOC_Os07g27320.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr3g163350.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.7031.1.S1_at	A	A1TS	POPTR_0008s04870	POPTR_0008s04870 (11)	scaffold_8:2819247-2819993(-) (11)	NA	Q9M5L0	60S ribosomal protein L35	AT2G39390.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7034.1.S1_at	A	A1TS	POPTR_0014s13640	POPTR_0014s13640 (10)	scaffold_14:10008472-10009266(+) (10)	NA	Q9XIW1	Probable xyloglucan endotransglucosylase/hydrolase protein 5	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099550.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.7035.1.S1_at	A	A1TS	POPTR_0018s01280	POPTR_0018s01280 (11)	scaffold_18:1247627-1248586(+) (11)	NA	Q6GP53	"N-alpha-acetyltransferase 50, NatE catalytic subunit"	AT5G11340.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os01g42470.2	"acetyltransferase, GNAT family, putative, expressed"	Medtr5g106430.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.704.1.S1_a_at	A	A1TS	POPTR_0007s07820	POPTR_0007s07820 (11)	scaffold_7:6247124-6247264(-) (11)	NA	NA	NA	AT1G50120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os06g41440.2	expressed protein	Medtr8g009320.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.704.2.S1_at	A	A1MS	POPTR_0007s07820	POPTR_0007s07820 (9)	scaffold_7:6247287-6247572(-) (9)	NA	NA	NA	AT1G50120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os06g41440.2	expressed protein	Medtr8g009320.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7040.1.S1_at	A	A1TS	POPTR_0005s11430	POPTR_0005s11430 (10)	scaffold_5:8258347-8259314(-) (10)	NA	Q42564	"L-ascorbate peroxidase 3, peroxisomal"	AT4G35000.1	ascorbate peroxidase 3 	LOC_Os04g14680.1	"OsAPx3 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr5g022420.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.7044.1.S1_at	A	A1TS	POPTR_0014s02960	POPTR_0014s02960 (11)	scaffold_14:2433072-2433640(+) (11)	NA	P27521	"Chlorophyll a-b binding protein 4, chloroplastic"	AT1G45474.2	photosystem I light harvesting complex gene 5 	LOC_Os02g52650.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr3g147810.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.7045.1.S1_a_at	A	A1TS	POPTR_0004s06640	POPTR_0004s06640 (11)	scaffold_4:5325161-5325220(-) (11)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr3g137660.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.7045.2.S1_at	A	A1TS	POPTR_0004s06640	POPTR_0004s06640 (10)	scaffold_4:5325124-5325434(-) (10)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr3g137660.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.7047.1.S1_at	A	A1TS	POPTR_0015s12900	POPTR_0015s12900 (11)	scaffold_15:13077522-13077982(-) (11)	NA	NA	NA	AT5G52420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g40040.1	expressed protein	Medtr1g126770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7048.1.A1_s_at	A	A1TS	POPTR_0015s15410	POPTR_0015s15410 (10)	scaffold_15:14701230-14702644(-) (11)	NA	Q93VA3	"Cytochrome c6, chloroplastic"	AT5G45040.1	Cytochrome c 	LOC_Os07g38000.1	"cytochrome c, putative, expressed"	Medtr4g114590.1	"Cytochrome c, class I "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.705.1.A1_at	A	A1TS	POPTR_0006s07380	POPTR_0006s07380 (9)	scaffold_6:5320578-5321782(+) (9)	NA	Q9LU72	Probable inactive purple acid phosphatase 28	AT5G57140.1	purple acid phosphatase 28 	LOC_Os06g48570.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr2g042800.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
Ptp.7050.1.S1_s_at	A	A1TS	POPTR_0008s10250	POPTR_0008s10250 (11)	scaffold_8:6421824-6422139(+) (11)	NA	P07728	Glutelin type-A 1	AT2G28680.1	RmlC-like cupins superfamily protein 	LOC_Os01g74480.1	"cupin domain containing protein, expressed"	Medtr4g098190.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
Ptp.7052.1.A1_a_at	A	A1TS	POPTR_0013s03930	POPTR_0013s03930 (11)	scaffold_13:2580982-2581149(+) (11)	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117520.1	"zinc finger family protein {Arabid, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7052.1.A1_at	A	A1TS	POPTR_0013s03930	POPTR_0013s03930 (11)	scaffold_13:2579781-2581308(+) (11)	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117520.1	"zinc finger family protein {Arabid, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7052.2.A1_at	A	A1MS	POPTR_0013s03930	POPTR_0013s03930 (11)	scaffold_13:2580703-2580940(+) (11)	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117520.1	"zinc finger family protein {Arabid, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7055.1.S1_at	A	A1TS	POPTR_0002s22920	POPTR_0002s22920 (11)	scaffold_2:20070545-20073317(-) (11)	NA	P33490	Auxin-binding protein T85	AT4G02980.1	endoplasmic reticulum auxin binding protein 1 	LOC_Os12g34450.1	"auxin-binding protein 4 precursor, putative, expressed"	Medtr1g111460.1	Auxin-binding protein 	NA	GO:0004872|receptor activity	GO:0071212|subsynaptic reticulum||GO:0005788|endoplasmic reticulum lumen
Ptp.7058.1.S1_at	A	A1TS	POPTR_0001s33720	POPTR_0001s33720 (9)	scaffold_1:31894856-31897783(-) (9)	NA	NA	NA	AT3G27050.1	unknown protein; Has 43 Blast hits to 43 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os11g29700.2	expressed protein	Medtr1g068130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7060.1.A1_at	A	A1MS	POPTR_0002s08710	POPTR_0002s08710 (11)	scaffold_2:6115505-6117312(+) (11)	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7060.1.A1_s_at	A	A1MS	POPTR_0002s08710	POPTR_0002s08710 (11)	scaffold_2:6117112-6117251(+) (11)	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7060.1.A1_x_at	A	A1MS	POPTR_0002s08710	POPTR_0002s08710 (11)	scaffold_2:6115563-6117324(+) (11)	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7061.1.S1_s_at	A	A1MS	POPTR_0015s11800	POPTR_0015s11800 (11)	scaffold_15:12326052-12326174(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7062.1.S1_at	A	A1TS	POPTR_0007s07300	POPTR_0007s07300 (11)	scaffold_7:5600706-5601162(-) (11)//scaffold_7:5637105-5644047(-) (9)	NA	O81974	Cytochrome P450 71D8	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr5g102030.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.7063.1.S1_s_at	A	A1TS	POPTR_0008s17140	POPTR_0008s17140 (11)	scaffold_8:11516648-11518265(+) (11)	POPTR_0010s07660 (7)	O22785	Pre-mRNA-processing factor 19 homolog 2	AT2G33340.2	MOS4-associated  complex 3B 	LOC_Os10g32880.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g065090.1	U box; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7063.2.S1_at	A	A1TS	POPTR_0008s17140	POPTR_0008s17140 (11)	scaffold_8:11519399-11522148(+) (11)	NA	O22785	Pre-mRNA-processing factor 19 homolog 2	AT2G33340.2	MOS4-associated  complex 3B 	LOC_Os10g32880.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g065090.1	U box; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7064.1.S1_s_at	A	A1TS	POPTR_0004s14290	POPTR_0004s14290 (11)	scaffold_4:14749229-14749584(-) (11)	NA	Q949R4	"4,5-DOPA dioxygenase extradiol-like protein"	AT4G15093.1	catalytic LigB subunit of aromatic ring-opening dioxygenase family 	LOC_Os01g65680.1	"4,5-DOPA dioxygenase extradiol, putative, expressed"	Medtr6g070870.1	"Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B "	GO:0006725|cellular aromatic compound metabolic process	GO:0008198|ferrous iron binding||GO:0016491|oxidoreductase activity	NA
Ptp.7065.1.S1_at	A	A1MS	POPTR_0006s21960	POPTR_0006s21960 (9)	scaffold_6:20963310-20963468(+) (9)	NA	Q9SRM9	Aluminum-activated malate transporter 8	AT3G11680.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105110.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7066.1.S1_at	A	A1TS	POPTR_0008s02970	POPTR_0008s02970 (10)	scaffold_8:1556212-1556807(+) (10)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g44590.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr7g124420.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7067.1.S1_at	A	A1TS	POPTR_0001s30260	POPTR_0001s30260 (11)	scaffold_1:28773490-28773961(+) (11)	NA	Q42430	Zinc finger protein 1	AT1G27730.1	salt tolerance zinc finger 	LOC_Os12g39400.1	"ZOS12-09 - C2H2 zinc finger protein, expressed"	Medtr1g023440.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.7068.1.S1_at	A	A1TS	POPTR_0018s09710	POPTR_0018s09710 (10)	scaffold_18:10723006-10723332(+) (10)	NA	Q96522	Peroxidase 45	AT4G30170.1	Peroxidase family protein 	LOC_Os07g02440.1	"peroxidase precursor, putative, expressed"	Medtr8g129440.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.707.1.A1_at	A	A1TS	POPTR_0001s10410	POPTR_0001s10410 (11)	scaffold_1:8090322-8090975(+) (11)	NA	Q9T012	High mobility group B protein 13	AT4G11080.1	HMG (high mobility group) box protein 	LOC_Os02g15810.1	"HMG1/2, putative, expressed"	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7071.1.S1_s_at	A	A1TS	POPTR_0017s12780	POPTR_0017s12780 (11)	scaffold_17:12951935-12952197(+) (11)	NA	Q9FNP8	40S ribosomal protein S19-3	AT5G61170.1	Ribosomal protein S19e family protein 	LOC_Os03g31134.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g005130.1	Ribosomal protein S19e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7072.1.S1_s_at	A	A1TS	POPTR_0013s06360	POPTR_0013s06360 (11)	scaffold_13:4909885-4909931(+) (11)//scaffold_15:9250514-9250560(-) (10)//scaffold_7:6016547-6016593(+) (10)	NA	Q4PGW7	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr7g103920.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.7073.1.S1_at	A	A1MS	POPTR_0010s13310	POPTR_0010s13310 (10)	scaffold_10:13168292-13168399(+) (10)	NA	Q8LGG8	Universal stress protein A-like protein	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.7073.3.A1_s_at	A	A1TS	POPTR_0010s13310	POPTR_0010s13310 (11)	scaffold_10:13167377-13168147(+) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.7074.1.S1_at	A	A1TS	POPTR_0004s06090	POPTR_0004s06090 (11)	scaffold_4:4838955-4839491(-) (11)	NA	O49403	Heat stress transcription factor A-4a	AT4G18880.1	heat shock transcription factor  A4A 	LOC_Os01g54550.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g135910.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.7075.1.S1_at	A	A1TS	POPTR_0013s06300	POPTR_0013s06300 (9)	scaffold_13:4729028-4729452(+) (9)	NA	Q93V93	Peroxidase 44	AT4G26010.1	Peroxidase superfamily protein 	LOC_Os03g02939.1	"peroxidase precursor, putative, expressed"	Medtr7g103630.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.7076.2.S1_at	A	A1MS	POPTR_0005s24780	POPTR_0005s24780 (11)	scaffold_5:23226855-23226895(+) (11)	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.7078.1.S1_s_at	A	A1MS	POPTR_0009s07790	POPTR_0009s07790 (11)	scaffold_9:7235027-7235476(+) (11)	NA	Q91348	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase"	AT1G07110.1	"fructose-2,6-bisphosphatase "	LOC_Os05g07130.1	"6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed"	Medtr5g080220.1	"Fructose-2,6-bisphosphatase; "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0006000|fructose metabolic process	GO:0003873|6-phosphofructo-2-kinase activity||GO:0005524|ATP binding	NA
Ptp.708.1.A1_at	A	A1MS	POPTR_0016s13270	POPTR_0016s13270 (9)	scaffold_16:12467069-12473499(-) (10)	POPTR_0016s13260 (7)	Q8H1T3	"Ferritin-2, chloroplastic"	AT5G01600.1	ferretin 1 	LOC_Os12g01530.1	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr4g011930.1	Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
Ptp.7081.1.A1_a_at	A	A1TS	POPTR_0014s18850	POPTR_0014s18850 (11)	scaffold_14:16353857-16354065(-) (11)	NA	Q56W64	Probable isoaspartyl peptidase/L-asparaginase 3	AT5G61540.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os04g46370.1	"L-asparaginase precursor protein, putative, expressed"	Medtr3g009540.1	"Peptidase T2, asparaginase 2 "	NA	GO:0016787|hydrolase activity	NA
Ptp.7082.1.S1_at	A	A1TS	POPTR_0005s16410	POPTR_0005s16410 (9)	scaffold_5:13163342-13164522(-) (9)	NA	Q84WN0	"Uncharacterized protein At4g37920, chloroplastic"	AT1G36320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g20110.1	expressed protein	Medtr2g034600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7086.1.S1_a_at	A	A1TS	POPTR_0002s01660	POPTR_0002s01660 (11)	scaffold_2:878659-882709(-) (11)	NA	Q96324	Glutathione S-transferase	AT3G03190.1	glutathione S-transferase F11 	LOC_Os03g04260.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7088.1.S1_at	A	A1TS	POPTR_0001s22800	POPTR_0001s22800 (11)	scaffold_1:21693430-21694353(+) (11)	NA	Q84VQ1	SNF1-related protein kinase regulatory subunit beta-1	AT5G21170.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os05g41220.1	"SNF1-related protein kinase regulatory subunit beta-1, putative, expressed"	Medtr5g095330.1	"SNF1-related protein kinase regulatory subunit beta-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7090.1.S1_at	A	A1TS	POPTR_0002s11180	POPTR_0002s11180 (11)	scaffold_2:8258502-8259680(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT4G24480.1	Protein kinase superfamily protein 	LOC_Os04g52140.1	"protein kinase domain containing protein, expressed"	Medtr3g149670.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7094.1.S1_at	A	A1TS	POPTR_0006s05030	POPTR_0006s05030 (11)	scaffold_6:3501343-3503591(-) (11)	NA	Q6DBQ8	Glycolipid transfer protein domain-containing protein 1	AT2G34690.1	Glycolipid transfer protein (GLTP) family protein 	LOC_Os03g57140.1	"GLTP domain containing protein, putative, expressed"	Medtr2g130020.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
Ptp.7095.1.S1_at	A	A1TS	POPTR_0008s19110	POPTR_0008s19110 (11)	scaffold_8:13094551-13094611(+) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr3g114720.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7098.1.S1_at	A	A1TS	POPTR_0009s08340	POPTR_0009s08340 (11)	scaffold_9:7665959-7666494(+) (11)	NA	O60094	DNA polymerase V	AT5G64420.1	DNA polymerase V family 	LOC_Os02g04270.1	"DNA polymerase V, putative, expressed"	Medtr2g010160.1	DNA polymerase V 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
Ptp.71.1.A1_a_at	A	A1TS	POPTR_0001s25100	POPTR_0001s25100 (11)	scaffold_1:24328506-24329034(-) (11)	NA	Q0WWW9	"D-xylose-proton symporter-like 3, chloroplastic"	AT5G59250.1	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.710.1.A1_at	A	A1TS	POPTR_0006s24100	POPTR_0006s24100 (10)	scaffold_6:22777407-22777775(-) (10)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7100.1.A1_s_at	A	A1TS	POPTR_0013s02980	POPTR_0013s02980 (11)	scaffold_13:1803308-1803675(-) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G27320.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g098780.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.7101.1.S1_s_at	A	A1TS	POPTR_0009s11520	POPTR_0009s11520 (11)	scaffold_9:9551159-9551853(-) (11)	NA	P27612	Phospholipase A-2-activating protein	AT3G18860.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g03160.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7103.1.S1_at	A	A1TS	POPTR_0007s14820	POPTR_0007s14820 (11)	scaffold_7:14549176-14549398(+) (11)	NA	NA	NA	AT1G58420.1	Uncharacterised conserved protein UCP031279 	NA	NA	Medtr8g101800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7105.1.S1_s_at	A	A1TS	POPTR_0011s03350	POPTR_0011s03350 (11)	scaffold_11:3500651-3501166(+) (11)	NA	NA	NA	AT1G61740.1	Sulfite exporter TauE/SafE family protein 	LOC_Os01g57710.1	"membrane protein, putative, expressed"	Medtr2g010790.1	Protein of unknown function DUF81 	NA	NA	GO:0016021|integral to membrane
Ptp.7107.1.S1_at	A	A1MS	POPTR_0010s14280	POPTR_0010s14280 (9)	scaffold_10:13944077-13944577(-) (9)	NA	Q9LI84	Probable calcium-binding protein CML16	AT3G25600.1	Calcium-binding EF-hand family protein 	LOC_Os05g50180.1	"OsCML14 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g115680.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7108.1.S1_at	A	A1TS	POPTR_0011s05840	POPTR_0011s05840 (9)	scaffold_11:5888743-5889296(-) (9)	NA	NA	NA	AT5G46060.1	"Protein of unknown function, DUF599 "	LOC_Os08g28970.1	expressed protein	Medtr2g018300.1	Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7110.1.S1_s_at	A	A1TS	POPTR_0014s16830	POPTR_0014s16830 (11)	scaffold_14:12928489-12929009(-) (11)	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G04240.2	RING/U-box superfamily protein 	LOC_Os08g38460.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g106720.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7110.2.S1_at	A	A1TS	POPTR_0014s16830	POPTR_0014s16830 (9)	scaffold_14:12927769-12927838(-) (9)	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G04240.2	RING/U-box superfamily protein 	LOC_Os08g38460.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g106720.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7112.1.S1_at	A	A1TS	POPTR_0018s08410	POPTR_0018s08410 (10)	scaffold_18:9356213-9356443(-) (10)	NA	NA	NA	AT5G21940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g35630.1	"MTD1, putative, expressed"	Medtr1g019780.1	"MTD1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7112.1.S1_s_at	A	A1TS	POPTR_0018s08410	POPTR_0018s08410 (11)	scaffold_18:9355190-9355394(-) (11)	NA	NA	NA	AT5G21940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g35630.1	"MTD1, putative, expressed"	Medtr1g019780.1	"MTD1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7113.1.S1_at	A	A1TS	POPTR_0002s20290	POPTR_0002s20290 (10)	scaffold_2:16281391-16282005(+) (10)	NA	NA	NA	AT4G02270.1	root hair specific 13 	NA	NA	Medtr1g107970.1	Cell surface antigen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7114.1.S1_s_at	A	A1TS	POPTR_0013s05790	POPTR_0013s05790 (11)	scaffold_13:4177647-4178022(-) (11)	NA	O64654	"Thioredoxin-like 1-1, chloroplastic"	AT1G08570.1	atypical CYS  HIS rich thioredoxin 4 	LOC_Os03g21000.1	"thioredoxin, putative, expressed"	Medtr7g100190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.7115.1.S1_a_at	A	A2TS	POPTR_0013s05540	POPTR_0019s04940 (11)//POPTR_0013s05540 (11)	scaffold_13:3944686-3945340(-) (11)//scaffold_19:5148588-5149258(+) (11)	NA	Q9UNL4	Inhibitor of growth protein 4	AT1G54390.3	PHD finger protein-related 	LOC_Os03g53700.1	"PHD-finger domain containing protein, putative, expressed"	Medtr7g100390.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7115.1.S1_at	A	A1TS	POPTR_0013s05540	POPTR_0013s05540 (11)	scaffold_13:3944578-3945723(-) (11)	NA	Q9UNL4	Inhibitor of growth protein 4	AT1G54390.3	PHD finger protein-related 	LOC_Os03g53700.1	"PHD-finger domain containing protein, putative, expressed"	Medtr7g100390.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7116.1.S1_s_at	A	A1TS	POPTR_0005s21500	POPTR_0005s21500 (11)	scaffold_5:20634901-20635121(-) (11)	NA	P42777	G-box-binding factor 4	AT5G44080.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g64730.1	"bZIP transcription factor domain containing protein, expressed"	Medtr1g125010.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.7117.1.S1_s_at	A	A1TS	POPTR_0007s05300	POPTR_0007s05300 (11)	scaffold_7:3415756-3415961(+) (11)	NA	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os02g18320.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr3g101870.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.7119.1.S1_at	A	A1TS	POPTR_0001s24070	POPTR_0001s24070 (11)	scaffold_1:23453947-23454308(-) (11)	NA	Q9LQQ8	Probable serine/threonine-protein kinase RLCKVII	AT1G07870.2	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g113860.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.712.1.A1_s_at	A	A1TS	POPTR_0010s08740	POPTR_0010s08740 (11)	scaffold_10:9601687-9602222(-) (11)	NA	P27806	Histone H1	AT2G30620.2	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.7120.1.S1_at	A	A1TS	POPTR_0010s19280	POPTR_0010s19280 (11)	scaffold_10:17238842-17239219(+) (11)	NA	NA	NA	AT5G05500.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os01g07060.1	"POEI43 - Pollen Ole e I allergen and extensin family protein precursor, putative"	Medtr3g094630.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7121.1.S1_at	A	A1TS	POPTR_0007s13730	POPTR_0007s13730 (11)	scaffold_7:13788598-13790246(-) (11)	NA	P43557	"Protein FMP32, mitochondrial"	AT2G16460.1	Protein of unknown function (DUF1640) 	LOC_Os06g49890.1	"coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed"	Medtr5g021330.1	Protein of unknown function DUF1640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7122.1.S1_at	A	A1TS	POPTR_0015s01390	POPTR_0015s01390 (11)	scaffold_15:860102-861382(+) (11)	NA	NA	NA	AT5G53045.1	unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os02g20280.1	conserved hypothetical protein	Medtr1g009000.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7124.1.S1_at	A	A1TS	POPTR_0004s14860	POPTR_0004s14860 (11)	scaffold_4:15517619-15518371(-) (11)	NA	Q8QZZ7	TP53RK-binding protein	AT4G34412.1	CONTAINS InterPro DOMAIN/s: Kinase binding protein CGI-121 (InterPro:IPR013926); Has 275 Blast hits to 275 proteins in 139 species: Archae - 0; Bacteria - 5; Metazoa - 98; Fungi - 109; Plants - 42; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os01g04910.1	"TP53RK-binding protein, putative, expressed"	AC233655_19.1	Kinase binding protein CGI-121 AC233655.2 128812-130346 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7129.1.S1_at	A	A1TS	POPTR_0001s23940	POPTR_0001s23940 (9)	scaffold_1:23322553-23323107(+) (9)	NA	Q9ZPW9	Non-specific lipid-transfer protein 8	AT2G18370.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g34840.1	"LTPL5 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr2g080460.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.713.1.S1_at	A	A1TS	POPTR_0014s08480	POPTR_0014s08480 (10)	scaffold_14:6294860-6295462(-) (10)	NA	Q3EDL4	Probable serine/threonine-protein kinase At1g01540	AT1G01540.2	Protein kinase superfamily protein 	LOC_Os03g03410.1	"serine/threonine-protein kinase, putative, expressed"	Medtr7g088440.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7131.2.S1_at	A	A1MS	POPTR_0009s03240	POPTR_0009s03240 (9)	scaffold_9:3926611-3926862(-) (9)	NA	Q9LX82	Transcription factor MYB48	AT3G46130.1	myb domain protein 48 	LOC_Os11g47460.1	"MYB family transcription factor, putative, expressed"	Medtr2g114450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7132.1.S1_at	A	A1TS	POPTR_0015s05980	POPTR_0015s05980 (11)	scaffold_15:6282182-6282716(-) (11)	NA	P23472	Hevamine-A	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr1g125770.1	"Glycoside hydrolase, chitinase active site "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.7134.1.S1_a_at	A	A1TS	POPTR_0009s11390	POPTR_0009s11390 (11)	scaffold_9:9481790-9482592(-) (11)	NA	P23244	Hemoglobin-2	AT2G16060.1	hemoglobin 1 	LOC_Os03g12510.1	"non-symbiotic hemoglobin 2, putative, expressed"	Medtr5g087770.1	Globin 	NA	GO:0020037|heme binding	NA
Ptp.7136.1.A1_s_at	A	A1TS	POPTR_0010s00910	POPTR_0010s00910 (11)	scaffold_10:634488-635485(-) (11)	NA	Q80ZX8	Sperm-associated antigen 1	AT3G16760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g22140.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g065330.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7137.1.S1_at	A	A1TS	POPTR_0013s15100	POPTR_0013s15100 (9)	scaffold_13:15156781-15157131(+) (11)	NA	NA	NA	AT3G51620.2	PAP/OAS1 substrate-binding domain superfamily 	LOC_Os12g02260.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	NA
Ptp.7138.1.S1_s_at	A	A1TS	POPTR_0015s02120	POPTR_0015s02120 (11)	scaffold_15:1458485-1459340(-) (11)	NA	NA	NA	AT3G61700.2	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7139.1.S1_at	A	A1TS	POPTR_0006s12310	POPTR_0006s12310 (10)	scaffold_6:9476061-9476445(-) (10)	NA	Q15428	Splicing factor 3A subunit 2	AT2G32600.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g15700.1	"splicing factor 3A subunit 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.714.1.A1_a_at	A	A1TS	POPTR_0008s06510	POPTR_0008s06510 (11)	scaffold_8:3871535-3871643(+) (11)	NA	NA	NA	AT5G23950.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7140.1.S1_at	A	A1TS	POPTR_0019s04470	POPTR_0019s04470 (11)	scaffold_19:4628235-4633155(+) (11)	NA	Q9SWE7	V-type proton ATPase subunit E	AT4G11150.1	vacuolar ATP synthase subunit E1 	LOC_Os01g46980.1	"vacuolar ATP synthase subunit E, putative, expressed"	Medtr5g009830.1	"H+-transporting two-sector ATPase, E subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.7142.1.S1_at	A	A1TS	POPTR_0009s11840	POPTR_0009s11840 (9)	scaffold_9:9750711-9752202(-) (9)	NA	P54654	Adenylyl cyclase-associated protein	AT4G34490.1	cyclase associated protein 1 	LOC_Os03g51250.1	"adenylyl cyclase-associated protein, putative, expressed"	Medtr4g095480.1	Cyclase-associated protein; 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.7143.1.S1_at	A	A1TS	POPTR_0009s06290	POPTR_0009s06290 (11)	scaffold_9:6086881-6088369(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.7147.1.S1_a_at	A	A1TS	POPTR_0017s13430	POPTR_0017s13430 (11)	scaffold_17:13596440-13597946(+) (11)	NA	P39598	Uncharacterized protein ywbO	AT5G38900.1	Thioredoxin superfamily protein 	NA	NA	Medtr7g014900.2	DSBA oxidoreductase; Thioredoxin-like fold 	NA	GO:0015035|protein disulfide oxidoreductase activity	GO:0030288|outer membrane-bounded periplasmic space
Ptp.7148.1.S1_at	A	A1TS	POPTR_0005s05420	POPTR_0005s05420 (9)	scaffold_5:3585311-3585749(-) (9)	NA	Q9LIK7	"Putative calcium-transporting ATPase 13, plasma membrane-type"	AT3G22910.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.7149.1.S1_at	A	A1TS	POPTR_0005s16490	POPTR_0005s16490 (9)	scaffold_5:13337716-13338320(+) (9)	NA	NA	NA	AT4G08570.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g26650.2	"heavy metal-associated domain containing protein, expressed"	Medtr4g140470.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.715.2.A1_at	A	A1TS	POPTR_0004s14120	POPTR_0004s14120 (11)	scaffold_4:14611253-14611332(+) (11)	NA	P80318	T-complex protein 1 subunit gamma	AT5G26360.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g34690.1	"T-complex protein, putative, expressed"	Medtr2g015240.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.7150.1.S1_at	A	A1MS	POPTR_0015s10090	POPTR_0015s10090 (9)	scaffold_15:11130525-11130861(-) (9)	NA	Q9SJM0	Callose synthase 10	AT2G36850.1	glucan synthase-like 8 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.7151.1.S1_at	A	A1TS	POPTR_0009s11590	POPTR_0009s11590 (10)	scaffold_9:9603345-9603754(+) (10)	NA	Q9SDY5	NEDD8-conjugating enzyme Ubc12	AT4G36800.2	RUB1 conjugating enzyme 1 	LOC_Os10g11260.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.7151.1.S1_s_at	A	A1TS	POPTR_0009s11590	POPTR_0009s11590 (11)	scaffold_9:9603741-9604275(+) (11)	NA	Q9SDY5	NEDD8-conjugating enzyme Ubc12	AT4G36800.2	RUB1 conjugating enzyme 1 	LOC_Os10g11260.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.7154.1.A1_at	A	A1TS	POPTR_0001s28480	POPTR_0001s28480 (11)	scaffold_1:27239936-27240558(+) (11)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT5G58660.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g33360.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr7g047260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7154.2.A1_a_at	A	A1TS	POPTR_0001s28480	POPTR_0001s28480 (11)	scaffold_1:27237825-27238149(+) (11)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT5G58660.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g33360.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr7g047260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7155.1.A1_at	A	A1TS	POPTR_0007s04040	POPTR_0007s04040 (10)	scaffold_7:2414591-2417245(-) (10)	POPTR_0005s06290 (8)	Q749B4	50S ribosomal protein L17	AT5G09770.1	Ribosomal protein L17 family protein 	LOC_Os01g62210.1	"50S ribosomal protein L17, putative, expressed"	Medtr3g143710.1	Ribosomal protein L17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7158.1.S1_s_at	A	A1TS	POPTR_0011s05340	POPTR_0011s05340 (11)	scaffold_11:5263294-5264751(+) (11)	NA	Q03211	Pistil-specific extensin-like protein	AT2G33790.1	arabinogalactan protein 30 	LOC_Os01g07010.1	"POEI38 - Pollen Ole e I allergen and extensin family protein precursor, putative"	Medtr4g141270.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7160.1.S1_s_at	A	A1TS	POPTR_0013s05560	POPTR_0013s05560 (11)	scaffold_13:3961716-3962033(+) (11)	NA	Q08632	Short-chain type dehydrogenase/reductase	AT4G13180.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g31780.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	AC233662_57.1	Short-chain dehydrogenase/reductase SDR AC233662.1 262132-261094 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7160.2.A1_a_at	A	A1TS	POPTR_0013s05560	POPTR_0013s05560 (11)	scaffold_13:3961102-3961699(+) (11)	NA	Q08632	Short-chain type dehydrogenase/reductase	AT4G13180.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g31780.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	AC233662_57.1	Short-chain dehydrogenase/reductase SDR AC233662.1 262132-261094 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7162.1.S1_at	A	A1TS	POPTR_0014s01770	POPTR_0014s01770 (11)	scaffold_14:1655327-1655641(+) (11)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7164.1.S1_at	A	A1TS	POPTR_0015s09860	POPTR_0015s09860 (10)	scaffold_15:10957958-10958419(+) (10)	NA	Q7ZVZ7	Abhydrolase domain-containing protein FAM108C1	AT4G24760.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g18860.1	"OsPOP23 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g032300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7165.1.S1_at	A	A1TS	POPTR_0017s00500	POPTR_0017s00500 (9)	scaffold_17:188950-189885(-) (9)	NA	A2Q1V6	Cysteine protease ATG4	AT2G44140.1	Peptidase family C54 protein 	LOC_Os04g58560.1	"cysteine protease ATG4, putative, expressed"	Medtr7g092800.1	Peptidase C54 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7166.1.S1_at	A	A1TS	POPTR_0008s12670	POPTR_0008s12670 (11)	scaffold_8:8195320-8195694(-) (11)	NA	NA	NA	AT2G01300.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g03130.1	expressed protein	Medtr1g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7167.1.S1_s_at	A	A1TS	POPTR_0011s00480	POPTR_0011s00480 (11)	scaffold_11:198259-198401(+) (11)	NA	Q1JPL7	Pectinesterase/pectinesterase inhibitor 18	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g046920.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.717.1.A1_s_at	A	A1TS	POPTR_0015s15280	POPTR_0015s15280 (11)	scaffold_15:14617273-14617649(+) (11)	NA	Q2MY58	Patatin group A-3	AT3G54950.1	patatin-like protein 6 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g121000.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
Ptp.7170.1.S1_s_at	A	A2TS	POPTR_0001s10130	POPTR_0001s10150 (10)//POPTR_0001s10130 (10)	scaffold_1:7835493-7835960(-) (10)//scaffold_1:7843048-7843515(-) (10)	NA	P13240	Disease resistance response protein 206	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44250.1	"dirigent, putative, expressed"	Medtr8g137520.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7171.1.S1_s_at	A	A1TS	POPTR_0002s17150	POPTR_0002s17150 (11)	scaffold_2:12939878-12940105(-) (11)	NA	P0CH01	Putative RING-H2 finger protein ATL21A	AT2G46495.1	RING/U-box superfamily protein 	LOC_Os08g37760.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235758_12.1	"Zinc finger, RING-type AC235758.1 57299-60764 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7174.1.S1_s_at	A	A1TS	POPTR_0001s06840	POPTR_0001s06840 (11)	scaffold_1:5231795-5233377(+) (11)	POPTR_0003s19370 (8)	A8K979	ERI1 exoribonuclease 2	AT3G15140.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g17279.1	"exonuclease, putative, expressed"	Medtr8g043920.1	"Prion protein-interacting protein, related "	NA	GO:0008270|zinc ion binding	NA
Ptp.7175.2.S1_s_at	A	A1TS	POPTR_0001s16520	POPTR_0001s16520 (11)	scaffold_1:13305255-13305348(+) (11)	NA	NA	NA	AT1G54070.1	Dormancy/auxin associated family protein 	NA	NA	Medtr8g025840.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7176.1.S1_a_at	A	A1TS	POPTR_0006s11790	POPTR_0006s11790 (11)	scaffold_6:8964923-8965150(-) (11)	NA	Q9FMY5	Splicing factor U2af small subunit B	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.7178.1.S1_at	A	A1TS	POPTR_0016s03990	POPTR_0016s03990 (11)	scaffold_16:2235643-2236173(+) (11)	NA	Q9SU56	"L-galactono-1,4-lactone dehydrogenase, mitochondrial"	AT3G47930.1	"L-galactono-1,4-lactone dehydrogenase "	LOC_Os12g04520.1	"FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed"	Medtr1g068880.1	Galactonolactone dehydrogenase 	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.7179.1.S1_at	A	A1MS	POPTR_0005s02680	POPTR_0005s02680 (10)	scaffold_5:1710682-1710993(-) (10)	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr8g138850.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7180.1.S1_at	A	A1TS	POPTR_0006s21220	POPTR_0006s21220 (11)	scaffold_6:20321016-20321090(+) (11)	NA	Q8LB17	Uncharacterized protein At3g58460	AT3G58460.1	RHOMBOID-like protein 15 	LOC_Os03g44830.1	"OsRhmbd9 - Putative Rhomboid homologue, expressed"	AC235488_11.1	Rhomboid-like protein; UBA-like AC235488.1 47326-40593 E EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
Ptp.7180.2.S1_s_at	A	A1TS	POPTR_0006s21220	POPTR_0006s21220 (11)	scaffold_6:20317138-20317788(+) (11)	NA	Q8LB17	Uncharacterized protein At3g58460	AT3G58460.1	RHOMBOID-like protein 15 	LOC_Os03g44830.1	"OsRhmbd9 - Putative Rhomboid homologue, expressed"	AC235488_11.1	Rhomboid-like protein; UBA-like AC235488.1 47326-40593 E EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
Ptp.7180.3.S1_s_at	A	A1TS	POPTR_0006s21220	POPTR_0006s21220 (11)	scaffold_6:20319195-20320858(+) (11)	NA	Q8LB17	Uncharacterized protein At3g58460	AT3G58460.1	RHOMBOID-like protein 15 	LOC_Os03g44830.1	"OsRhmbd9 - Putative Rhomboid homologue, expressed"	AC235488_11.1	Rhomboid-like protein; UBA-like AC235488.1 47326-40593 E EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
Ptp.7183.1.A1_at	A	A1MS	POPTR_0016s12180	POPTR_0016s12180 (9)	scaffold_16:11519089-11519383(+) (9)	NA	NA	NA	AT5G01260.2	Carbohydrate-binding-like fold 	LOC_Os05g37450.1	"starch binding domain containing protein, putative, expressed"	Medtr4g012900.1	"Glycoside hydrolase, starch-binding; "	GO:0005975|carbohydrate metabolic process	GO:0003824|catalytic activity	NA
Ptp.7186.1.A1_s_at	A	A1TS	POPTR_0009s01980	POPTR_0009s01980 (11)	scaffold_9:2524745-2526155(+) (11)	NA	Q86VX9	Vacuolar fusion protein MON1 homolog A	AT2G28390.1	SAND family protein 	LOC_Os01g74460.2	"vacuolar fusion protein MON1 homolog A, putative, expressed"	Medtr2g110240.1	Yeast 73.5kDa hypothetical-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7187.1.S1_at	A	A1TS	POPTR_0001s27690	POPTR_0001s27690 (10)	scaffold_1:26545628-26546109(+) (10)	NA	P25766	Ras-related protein RGP1	AT3G12160.1	RAB GTPase homolog A4D 	LOC_Os09g10940.1	"ras-related protein, putative, expressed"	Medtr3g101960.1	Ras GTPase; 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.7190.1.S1_a_at	A	A1TS	POPTR_0006s07600	POPTR_0006s07600 (11)	scaffold_6:5527471-5527717(+) (11)	NA	Q9LVD4	Oxysterol-binding protein-related protein 4C	AT5G57240.2	OSBP(oxysterol binding protein)-related protein 4C 	LOC_Os08g40590.2	"oxysterol-binding protein, putative, expressed"	Medtr2g042530.1	Oxysterol-binding protein 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
Ptp.7191.1.S1_at	A	A1TS	POPTR_0012s13670	POPTR_0012s13670 (9)	scaffold_12:13721093-13722422(+) (9)	NA	Q9FJ80	F-box protein PP2-A14	AT5G52120.1	phloem protein 2-A14 	LOC_Os03g02550.1	"OsFBX76 - F-box domain containing protein, expressed"	Medtr1g129330.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7193.1.S1_at	A	A1MS	POPTR_0001s28210	POPTR_0001s28210 (9)	scaffold_1:26976393-26977003(+) (9)	NA	NA	NA	AT4G29070.2	Phospholipase A2 family protein 	LOC_Os07g46420.1	expressed protein	Medtr2g130270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7197.1.S1_at	A	A1TS	POPTR_0014s09580	POPTR_0014s09580 (9)	scaffold_14:7149765-7150304(-) (9)	NA	NA	NA	AT2G46550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g30930.1	expressed protein	Medtr1g008960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7198.2.A1_a_at	A	A1TS	POPTR_0010s21030	POPTR_0010s21030 (11)	scaffold_10:18471999-18473123(+) (11)	NA	Q9M2T1	AP3-complex subunit beta-A	AT3G55480.2	protein affected trafficking 2 	LOC_Os01g74180.1	"adaptin, putative, expressed"	Medtr5g087340.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.7199.1.S1_s_at	A	A1TS	POPTR_0011s09530	POPTR_0011s09530 (11)	scaffold_11:11831905-11831984(-) (11)	NA	Q9M4Y3	"30S ribosomal protein S10, chloroplastic"	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7199.2.A1_s_at	A	A1TS	POPTR_0011s09530	POPTR_0011s09530 (11)	scaffold_11:11830958-11831053(-) (11)	NA	Q9M4Y3	"30S ribosomal protein S10, chloroplastic"	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.72.1.S1_at	A	A1TS	POPTR_0003s17150	POPTR_0003s17150 (11)	scaffold_3:16598532-16600388(+) (11)	NA	NA	NA	AT1G67350.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g48110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7200.1.S1_s_at	A	A1TS	POPTR_0002s12380	POPTR_0002s12380 (11)	scaffold_2:9183549-9183751(+) (11)	NA	Q9STX3	F-box protein GID2	AT4G24210.1	F-box family protein 	NA	NA	Medtr5g104810.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7201.1.A1_at	A	A1TS	POPTR_0008s20730	POPTR_0008s20730 (9)	scaffold_8:14713063-14713384(+) (9)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33400.1	"basic 7S globulin precursor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7201.1.A1_s_at	A	A2TS	POPTR_0008s20730	POPTR_0008s20730 (9)//POPTR_0509s00210 (9)	scaffold_509:14420-14582(-) (9)//scaffold_8:14713402-14713564(+) (9)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33400.1	"basic 7S globulin precursor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7203.1.S1_s_at	A	A1TS	POPTR_0010s20370	POPTR_0010s20370 (9)	scaffold_10:17989480-17990554(-) (11)	NA	NA	NA	AT2G39855.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr5g088650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7205.1.S1_s_at	A	A1TS	POPTR_0010s06220	POPTR_0010s06220 (11)	scaffold_10:7632530-7634754(-) (11)	NA	Q6P7R8	Estradiol 17-beta-dehydrogenase 12	AT1G67730.1	beta-ketoacyl reductase 1 	LOC_Os02g38440.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g102850.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7206.1.S1_at	A	A1TS	POPTR_0013s09260	POPTR_0013s09260 (11)	scaffold_13:8907784-8909141(-) (11)	NA	Q87JZ5	UPF0189 protein VPA0103	AT2G40600.1	appr-1-p processing enzyme family protein 	LOC_Os03g21830.1	"appr-1-p processing enzyme family protein, putative, expressed"	Medtr1g008730.1	Appr-1-p processing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7209.1.S1_at	A	A1TS	POPTR_0017s11160	POPTR_0017s11160 (11)	scaffold_17:10829237-10829398(+) (11)	NA	Q54N38	Ubiquitin carboxyl-terminal hydrolase isozyme L5	AT1G65650.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	LOC_Os02g57630.2	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr8g105130.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	GO:0005622|intracellular
Ptp.7209.1.S1_s_at	A	A1TS	POPTR_0017s11160	POPTR_0017s11160 (11)	scaffold_17:10829578-10829779(+) (11)	NA	Q54N38	Ubiquitin carboxyl-terminal hydrolase isozyme L5	AT1G65650.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	LOC_Os02g57630.2	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr8g105130.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	GO:0005622|intracellular
Ptp.7210.1.S1_at	A	A1MS	POPTR_0010s23800	POPTR_0010s23800 (11)	scaffold_10:20281346-20281639(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7213.1.S1_s_at	A	A1TS	POPTR_0018s01330	POPTR_0018s01330 (11)	scaffold_18:1293180-1293701(-) (11)	POPTR_1294s00200 (7)	Q9ZP41	EG45-like domain containing protein	NA	NA	LOC_Os09g29710.1	"beta-expansin precursor, putative, expressed"	Medtr3g136440.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7214.1.A1_at	A	A1TS	POPTR_0003s08190	POPTR_0003s08190 (10)	scaffold_3:9597389-9598974(+) (10)	NA	P75713	Uncharacterized protein ylbA	AT4G17050.1	ureidoglycine aminohydrolase 	LOC_Os07g31270.1	"cupin 2, conserved barrel domain protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7216.1.S1_a_at	A	A1TS	POPTR_0014s17090	POPTR_0014s17090 (11)	scaffold_14:13259630-13259892(+) (11)	NA	NA	NA	AT3G07580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g39630.2	"iron-stress related protein, putative, expressed"	Medtr3g163650.1	"iron-stress related protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7216.3.S1_s_at	A	A1TS	POPTR_0014s17090	POPTR_0014s17090 (11)	scaffold_14:13258002-13258582(+) (11)	NA	NA	NA	AT3G07580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g39630.2	"iron-stress related protein, putative, expressed"	Medtr3g163650.1	"iron-stress related protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7217.1.S1_s_at	A	A1TS	POPTR_0010s19860	POPTR_0010s19860 (11)	scaffold_10:17648032-17648539(+) (11)	NA	O04204	60S acidic ribosomal protein P0-1	AT2G40010.1	Ribosomal protein L10 family protein 	LOC_Os08g03640.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr5g089540.1	Ribosomal protein L10; Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0042254|ribosome biogenesis||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.722.1.S1_at	A	A1TS	POPTR_0008s13940	POPTR_0008s13940 (11)	scaffold_8:9196896-9197394(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g028080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7220.1.S1_s_at	A	A1TS	POPTR_0017s06570	POPTR_0017s06570 (11)	scaffold_17:4992843-4993255(+) (11)	NA	O23044	Peroxidase 3	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os06g46799.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.7226.1.S1_s_at	A	A1TS	POPTR_0010s00340	POPTR_0010s00340 (11)	scaffold_10:119812-121008(-) (11)	NA	Q8GZ17	COBRA-like protein 7	AT4G16120.1	COBRA-like protein-7 precursor 	LOC_Os06g47110.1	"COBRA-like protein precursor, putative, expressed"	Medtr5g005810.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7228.1.A1_a_at	A	A1TS	POPTR_0008s13420	POPTR_0008s13420 (9)	scaffold_8:8797104-8797816(-) (11)	NA	Q68F38	Protein VAC14 homolog	AT2G01690.1	ARM repeat superfamily protein 	LOC_Os03g12300.1	"HEAT repeat family protein, putative, expressed"	Medtr4g157120.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7229.1.S1_at	A	A1TS	POPTR_0006s23410	POPTR_0006s23410 (11)	scaffold_6:22143795-22144258(+) (11)	NA	Q9SMZ3	F-box only protein 13	AT4G33160.1	F-box family protein 	LOC_Os03g28130.1	"OsFBX94 - F-box domain containing protein, expressed"	Medtr3g104000.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7229.2.S1_a_at	A	A1TS	POPTR_0006s23410	POPTR_0006s23410 (11)	scaffold_6:22142822-22143043(+) (11)	NA	Q9SMZ3	F-box only protein 13	AT4G33160.1	F-box family protein 	LOC_Os03g28130.1	"OsFBX94 - F-box domain containing protein, expressed"	Medtr3g104000.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7229.2.S1_at	A	A1TS	POPTR_0006s23410	POPTR_0006s23410 (11)	scaffold_6:22143134-22143335(+) (11)	NA	Q9SMZ3	F-box only protein 13	AT4G33160.1	F-box family protein 	LOC_Os03g28130.1	"OsFBX94 - F-box domain containing protein, expressed"	Medtr3g104000.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7230.1.S1_at	A	A1TS	POPTR_0010s00710	POPTR_0010s00710 (9)	scaffold_10:403557-403607(-) (9)	NA	Q0WW40	F-box/kelch-repeat protein At1g16250	AT1G16250.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7230.1.S1_s_at	A	A1TS	POPTR_0010s00710	POPTR_0010s00710 (11)	scaffold_10:403191-403661(-) (11)	NA	Q0WW40	F-box/kelch-repeat protein At1g16250	AT1G16250.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7231.1.A1_at	A	A1TS	POPTR_0004s10170	POPTR_0004s10170 (11)	scaffold_4:8738138-8738430(+) (11)	NA	Q9M0X9	4-coumarate--CoA ligase-like 7	AT4G05160.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g05780.1	"4-coumarate--CoA ligase-like 7, putative, expressed"	Medtr8g043300.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.7234.1.S1_at	A	A1TS	POPTR_0006s13180	POPTR_0006s13180 (9)	scaffold_6:10414180-10414717(+) (9)	NA	NA	NA	AT2G42760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). 	NA	NA	Medtr2g097860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7236.1.S1_s_at	A	A3TS	POPTR_0005s14050	POPTR_0005s14050 (11)//POPTR_0005s14030 (10)//POPTR_0005s14040 (10)	scaffold_5:11054855-11055957(-) (10)//scaffold_5:11063740-11064803(-) (10)//scaffold_5:11080890-11081975(-) (11)	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23620.1	methyl esterase 1 	LOC_Os01g57770.1	"OsPOP4 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g018420.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7237.1.S1_at	A	A1TS	POPTR_0011s05150	POPTR_0011s05150 (11)	scaffold_11:5048839-5049284(-) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7239.1.A1_at	A	A1TS	POPTR_0001s34910	POPTR_0001s34910 (11)	scaffold_1:33129290-33131001(-) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT5G14720.1	Protein kinase superfamily protein 	LOC_Os06g29120.2	"STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g006330.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7240.1.A1_at	A	A1MA	POPTR_0001s47370	POPTR_0001s47370 (9)	scaffold_1:47593851-47594391(-) (9)	NA	Q8BJ03	Cytochrome c oxidase assembly protein COX15 homolog	AT5G56090.1	cytochrome c oxidase 15 	LOC_Os08g38720.1	"cytochrome c oxidase assembly protein COX15, putative, expressed"	Medtr5g104460.1	Cytochrome oxidase assembly 	GO:0006461|protein complex assembly	NA	GO:0016020|membrane
Ptp.7241.1.S1_s_at	A	A1TS	POPTR_0006s14150	POPTR_0006s14150 (11)	scaffold_6:11454113-11454972(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os07g42380.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g132790.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7241.2.S1_at	A	A1MS	POPTR_0006s14150	POPTR_0006s14150 (9)	scaffold_6:11455912-11456370(-) (9)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os07g42380.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g132790.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7242.1.S1_s_at	A	A1TS	POPTR_0015s07770	POPTR_0015s07770 (11)	scaffold_15:9064794-9065273(+) (11)	NA	Q8BL06	Inactive ubiquitin carboxyl-terminal hydrolase 54	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.7245.1.S1_at	A	A1TS	POPTR_0003s01350	POPTR_0003s01350 (11)	scaffold_3:1189502-1189581(+) (11)	NA	Q8RY89	Phosphatidylinositol-4-phosphate 5-kinase 8	AT1G60890.1	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os03g49510.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g137550.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
Ptp.7245.1.S1_s_at	A	A1TS	POPTR_0003s01350	POPTR_0003s01350 (11)	scaffold_3:1189259-1189464(+) (11)	NA	Q8RY89	Phosphatidylinositol-4-phosphate 5-kinase 8	AT1G60890.1	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os03g49510.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g137550.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
Ptp.7246.1.S1_at	A	A1TS	POPTR_0009s08420	POPTR_0009s08420 (11)	scaffold_9:7714170-7716572(+) (11)	NA	Q9C5C8	"Peptide methionine sulfoxide reductase B2, chloroplastic"	AT4G21860.2	methionine sulfoxide reductase B 2 	LOC_Os05g33510.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr4g121860.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
Ptp.7247.1.A1_at	A	A1TS	POPTR_0009s14100	POPTR_0009s14100 (11)	scaffold_9:11116610-11117939(-) (11)	NA	Q5TAQ9	DDB1- and CUL4-associated factor 8	AT4G35140.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g39760.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g111430.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7248.1.S1_s_at	A	A1TS	POPTR_0008s06210	POPTR_0008s06210 (11)	scaffold_8:3659643-3660012(-) (11)	NA	NA	NA	AT5G05960.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g33920.1	"LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7250.1.A1_s_at	A	A1TS	POPTR_0004s07240	POPTR_0004s07240 (11)	scaffold_4:5976752-5977706(-) (11)	NA	Q66GI4	"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial"	AT2G32230.1	proteinaceous RNase P 1 	LOC_Os02g17360.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g122420.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7252.1.S1_at	A	A1TS	POPTR_0014s18980	POPTR_0014s18980 (9)	scaffold_14:16639080-16639420(-) (9)	NA	Q969N2	GPI transamidase component PIG-T	AT3G07140.1	GPI transamidase component Gpi16 subunit family protein 	LOC_Os11g28980.1	"GPI transamidase component Gpi16 subunit family protein, putative, expressed"	NA	NA	NA	NA	GO:0042765|GPI-anchor transamidase complex||GO:0071212|subsynaptic reticulum
Ptp.7254.1.S1_at	A	A1TS	POPTR_0004s07700	POPTR_0004s07700 (11)	scaffold_4:6329468-6329860(+) (11)	NA	Q9FYR7	Scarecrow-like protein 8	AT5G52510.1	SCARECROW-like 8 	LOC_Os02g45760.1	"chitin-inducible gibberellin-responsive protein 2, putative, expressed"	AC146793_10.1	GRAS transcription factor AC146793.7 53118-50985 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7256.1.S1_at	A	A1TA	POPTR_0010s08800	POPTR_0010s08800 (9)	scaffold_10:9631020-9631417(+) (9)	NA	Q9ZUU3	Pentatricopeptide repeat-containing protein At2g37230	AT2G37230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g02020.1	"pentatricopeptide, putative, expressed"	Medtr7g041080.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7257.1.A1_s_at	A	A1TS	POPTR_0015s04770	POPTR_0015s04770 (11)	scaffold_15:4973623-4973996(-) (11)	POPTR_0520s00220 (8)//POPTR_0012s04290 (7)	NA	NA	AT1G18290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g03080.1	expressed protein	Medtr4g154720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7258.1.A1_at	A	A1TS	POPTR_0003s20480	POPTR_0003s20480 (10)	scaffold_3:18971985-18972437(+) (10)	NA	Q9LSF1	Serine/threonine-protein kinase OXI1	AT3G20830.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os08g39460.1	"AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g086770.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7259.1.A1_s_at	A	A1TS	POPTR_0006s23110	POPTR_0006s23110 (11)	scaffold_6:21963354-21963818(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7260.1.S1_at	A	A1TA	POPTR_0004s21710	POPTR_0004s21710 (10)	scaffold_4:20758317-20758842(-) (11)	NA	A5A7I7	Calcium-dependent protein kinase 4	AT2G17290.1	Calcium-dependent protein kinase family protein 	LOC_Os04g49510.1	"CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g106840.2	Protein kinase; Calcium-binding EF-hand; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7261.1.S1_at	A	A1TS	POPTR_0008s11810	POPTR_0008s11810 (10)	scaffold_8:7563588-7564112(-) (10)	NA	NA	NA	AT1G68580.2	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os08g33420.1	"agenet domain containing protein, expressed"	Medtr5g068170.1	Bromo adjacent region; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
Ptp.7262.1.S1_s_at	A	A1TS	POPTR_0006s21470	POPTR_0006s21470 (11)	scaffold_6:20538251-20538729(-) (11)	NA	NA	NA	AT2G35880.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os11g36340.1	"lymphoid organ expressed yellow head virus receptor protein, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7263.2.A1_a_at	A	A1TS	POPTR_0011s15160	POPTR_0011s15160 (9)	scaffold_11:17307031-17308114(-) (9)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G64700.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g01570.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g144230.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.7265.1.S1_s_at	A	A1TS	POPTR_0005s15840	POPTR_0005s15840 (11)	scaffold_5:12462336-12465079(+) (11)	NA	Q6NRL0	PrdX-deacylase domain-containing protein 1	AT1G44835.2	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g52880.2	"ybaK/prolyl-tRNA synthetase family protein, putative, expressed"	Medtr3g097700.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7267.1.A1_a_at	A	A1TS	POPTR_0015s10090	POPTR_0015s10090 (11)	scaffold_15:11114658-11115021(-) (11)	NA	Q9SJM0	Callose synthase 10	AT2G36850.1	glucan synthase-like 8 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.7268.1.S1_at	A	A1TS	POPTR_0006s21320	POPTR_0006s21320 (9)	scaffold_6:20386415-20389444(+) (9)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT5G06570.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g06880.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.7271.1.S1_at	A	A1MS	POPTR_0002s16120	POPTR_0002s16120 (10)	scaffold_2:12023030-12023415(-) (10)	NA	NA	NA	AT4G00450.1	RNA polymerase II transcription mediators 	LOC_Os07g45400.1	expressed protein	Medtr7g087340.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7272.1.S1_at	A	A1TS	POPTR_0016s07650	POPTR_0016s07650 (11)	scaffold_16:5483425-5483553(-) (11)	NA	O82039	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	AT3G11540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44510.1	"UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7275.1.S1_s_at	A	A1TS	POPTR_0016s05500	POPTR_0016s05500 (11)	scaffold_16:3437650-3437901(+) (11)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7276.1.S1_at	A	A1TS	POPTR_0012s07660	POPTR_0012s07660 (10)	scaffold_12:8580088-8580191(+) (10)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7278.1.S1_at	A	A1TS	POPTR_0002s01610	POPTR_0002s01610 (11)	scaffold_2:860686-861260(-) (11)	NA	Q7JUR6	Protein GDAP2 homolog	AT4G35750.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os04g47330.1	"rho-GTPase-activating protein-related, putative, expressed"	Medtr5g023170.1	"Rho-GTPase-activating protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7279.1.A1_at	A	A1TS	POPTR_0013s05850	POPTR_0013s05850 (11)	scaffold_13:4207872-4207907(-) (11)	NA	O50008	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.7279.1.A1_s_at	A	A2TS	POPTR_0013s05850	POPTR_0013s05850 (11)//POPTR_0019s05430 (10)	scaffold_13:4207954-4208208(-) (11)//scaffold_19:5775687-5775939(-) (10)	NA	O50008	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.728.1.A1_at	A	A1TS	POPTR_0019s07270	POPTR_0019s07270 (11)	scaffold_19:8250209-8250449(+) (11)	NA	P59278	Uncharacterized protein At1g51745	AT3G03140.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os02g47170.1	expressed protein	Medtr4g106850.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7280.1.S1_at	A	A1TS	POPTR_0009s09390	POPTR_0009s09390 (11)	scaffold_9:8328908-8330299(-) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT3G43740.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g32580.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g005220.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.7281.1.A1_at	A	A1TS	POPTR_0006s27890	POPTR_0006s27890 (11)	scaffold_6:25718311-25718677(-) (11)	NA	Q5QQ50	Xylosyltransferase 2	AT2G37585.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	AC229695_3.1	"Glycosyl transferase, family 14 AC229695.5 13205-18395 E EGN_Mt090430 200"	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.7285.1.S1_at	A	A1TS	POPTR_0012s02140	POPTR_0012s02140 (9)	scaffold_12:1779505-1780039(-) (9)	NA	O35685	Nuclear migration protein nudC	AT5G53400.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7287.1.S1_at	A	A1MS	POPTR_0018s06690	POPTR_0018s06690 (10)	scaffold_18:6730100-6730583(-) (10)	NA	Q8GYD2	Meiotic nuclear division protein 1 homolog	AT4G29170.1	Mnd1 family protein 	LOC_Os09g10850.1	"meiotic coiled-coil protein 7, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7288.1.S1_at	A	A1MS	POPTR_0006s05860	POPTR_0006s05860 (10)	scaffold_6:4125955-4126329(-) (10)	NA	Q69QZ0	Probable protein phosphatase 2C 27	AT2G25620.1	DNA-binding protein phosphatase 1 	LOC_Os02g55560.1	"protein phosphatase 2C, putative, expressed"	Medtr8g122540.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7289.1.S1_at	A	A1TS	POPTR_0001s30690	POPTR_0001s30690 (11)	scaffold_1:29158680-29165200(+) (11)//scaffold_1:29165116-29165666(+) (10)	POPTR_0001s30680 (8)	NA	NA	AT2G15220.1	Plant basic secretory protein (BSP) family protein 	LOC_Os10g34920.1	"secretory protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7290.1.S1_at	A	A1MS	POPTR_0009s08190	POPTR_0009s08190 (9)	scaffold_9:7537953-7538392(-) (9)	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os03g48060.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	NA	GO:0003824|catalytic activity	NA
Ptp.7290.1.S1_s_at	A	A1TS	POPTR_0009s08190	POPTR_0009s08190 (11)	scaffold_9:7538289-7538492(-) (11)	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os03g48060.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	NA	GO:0003824|catalytic activity	NA
Ptp.7290.2.S1_s_at	A	A1TS	POPTR_0009s08190	POPTR_0009s08190 (11)	scaffold_9:7536034-7536315(-) (11)	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os03g48060.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	NA	GO:0003824|catalytic activity	NA
Ptp.7295.1.S1_at	A	A1TS	POPTR_0006s01900	POPTR_0006s01900 (11)	scaffold_6:1142795-1143632(+) (11)	NA	NA	NA	AT4G17220.1	microtubule-associated proteins 70-5 	LOC_Os02g50320.2	"ATMAP70 protein, putative, expressed"	Medtr8g148820.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7296.1.S1_at	A	A1TS	POPTR_0013s13400	POPTR_0013s13400 (10)	scaffold_13:13889472-13889903(+) (10)	NA	Q7Y223	"Mannan endo-1,4-beta-mannosidase 2"	AT2G20680.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g54300.1	OsMan02 - Endo-Beta-Mannanase	Medtr4g107960.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7299.1.S1_s_at	A	A1TS	POPTR_0010s20360	POPTR_0010s20360 (11)	scaffold_10:17988443-17988839(+) (11)	NA	NA	NA	AT5G05960.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g62980.1	"LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.73.1.A1_s_at	A	A1TS	POPTR_0014s16090	POPTR_0014s16090 (11)	scaffold_14:12163075-12163193(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.730.1.A1_at	A	A1TS	POPTR_0005s14820	POPTR_0005s14820 (11)	scaffold_5:11746889-11748462(-) (11)	NA	A4QP78	UPF0760 protein C2orf29 homolog	AT5G18420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g13694.1	"AGAP007117-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7302.1.S1_s_at	A	A1TS	POPTR_0015s03350	POPTR_0015s03350 (11)	scaffold_15:2864601-2864909(+) (11)	NA	NA	NA	AT1G18470.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7304.1.S1_at	A	A1MA	POPTR_0008s03960	POPTR_0008s03960 (9)	scaffold_8:2183731-2184171(+) (9)	NA	NA	NA	AT1G13810.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os08g13890.1	"exonuclease, putative, expressed"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7305.1.S1_a_at	A	A1MS	POPTR_0014s08020	POPTR_0014s08020 (11)	scaffold_14:5950568-5950631(-) (11)	NA	Q54U49	Putative mediator of RNA polymerase II transcription subunit 12	AT4G00450.1	RNA polymerase II transcription mediators 	LOC_Os07g45400.1	expressed protein	Medtr7g087340.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.7305.1.S1_at	A	A1MS	POPTR_0014s08020	POPTR_0014s08020 (10)	scaffold_14:5950276-5950677(-) (10)	NA	Q54U49	Putative mediator of RNA polymerase II transcription subunit 12	AT4G00450.1	RNA polymerase II transcription mediators 	LOC_Os07g45400.1	expressed protein	Medtr7g087340.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.7308.1.S1_at	A	A1TS	POPTR_0018s02540	POPTR_0018s02540 (9)	scaffold_18:2324346-2324810(+) (9)	NA	Q753Q4	DNA-directed RNA polymerase II subunit RPB2	AT3G23780.2	nuclear RNA polymerase D2A 	LOC_Os04g54840.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr3g138340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.7311.1.S1_s_at	A	A2TS	POPTR_0018s13020	POPTR_0018s13020 (11)//POPTR_0018s13040 (11)	scaffold_18:13490051-13490107(-) (11)//scaffold_18:13504012-13504068(-) (11)	NA	NA	NA	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr8g120620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7312.1.S1_at	A	A1TS	POPTR_0018s11250	POPTR_0018s11250 (9)	scaffold_18:12052435-12052636(-) (9)	NA	NA	NA	AT5G57830.1	"Protein of unknown function, DUF593 "	LOC_Os08g34340.1	"DUF593 domain containing protein, expressed"	Medtr8g144910.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7314.1.S1_at	A	A1MS	POPTR_0003s02830	POPTR_0003s02830 (9)	scaffold_3:2930608-2931060(-) (9)	NA	Q9H1D9	DNA-directed RNA polymerase III subunit RPC6	AT5G23710.1	DNA binding;DNA-directed RNA polymerases 	NA	NA	Medtr7g020650.1	Copper fist DNA-binding; RNA polymerase Rpc34 subunit 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7316.1.S1_at	A	A1MS	POPTR_0013s07790	POPTR_0013s07790 (9)	scaffold_13:6625994-6626440(+) (9)	POPTR_0013s07820 (7)	Q6P643	THO complex subunit 7 homolog	AT5G16790.1	Tho complex subunit 7/Mft1p 	LOC_Os08g06360.1	"THO complex subunit 7, putative, expressed"	Medtr2g018950.1	Protein of unknown function DUF783 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7318.1.S1_at	A	A1MS	POPTR_0006s06040	POPTR_0006s06040 (9)	scaffold_6:4298818-4299347(-) (9)	NA	Q8N1E6	F-box/LRR-repeat protein 14	AT1G15740.1	Leucine-rich repeat family protein 	LOC_Os04g42470.4	"regulatory subunit, putative, expressed"	Medtr8g122250.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
Ptp.732.1.A1_at	A	A1TS	POPTR_0001s46710	POPTR_0001s46710 (11)	scaffold_1:47122282-47122808(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.732.2.S1_at	A	A1TS	POPTR_0001s46710	POPTR_0001s46710 (11)	scaffold_1:47121437-47121980(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.7320.1.S1_a_at	A	A1TS	POPTR_0015s01600	POPTR_0015s01600 (11)	scaffold_15:1002968-1003005(+) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT5G24240.1	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr3g124030.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
Ptp.7321.1.S1_at	A	A1MS	POPTR_0010s21650	POPTR_0010s21650 (10)	scaffold_10:18853027-18853551(-) (10)	NA	NA	NA	AT2G28710.1	C2H2-type zinc finger family protein 	LOC_Os03g17150.1	"ZOS3-09 - C2H2 zinc finger protein, expressed"	Medtr7g024970.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.7326.1.S1_at	A	A1TS	POPTR_0009s13550	POPTR_0009s13550 (11)	scaffold_9:10759094-10759831(+) (11)	NA	Q4I8E9	Protein PNS1	AT4G38640.1	Plasma-membrane choline transporter family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7327.1.S1_at	A	A1TS	POPTR_0001s10370	POPTR_0001s10370 (11)	scaffold_1:8054527-8056159(-) (11)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7327.1.S1_s_at	A	A1TS	POPTR_0001s10370	POPTR_0001s10370 (11)	scaffold_1:8054627-8056076(-) (11)	POPTR_0003s13730 (8)	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7328.1.A1_at	A	A1TS	POPTR_0002s20470	POPTR_0002s20470 (11)	scaffold_2:16511312-16511730(+) (11)	NA	NA	NA	AT1G02816.1	"Protein of unknown function, DUF538 "	LOC_Os05g29920.1	expressed protein	Medtr1g108140.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7329.1.S1_at	A	A1TS	POPTR_0009s01320	POPTR_0009s01320 (11)	scaffold_9:1587150-1587187(+) (11)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.733.1.A1_at	A	A1TS	POPTR_0004s19930	POPTR_0004s19930 (10)	scaffold_4:19584015-19584056(-) (10)	NA	O22165	Probable ribosome biogenesis protein RLP24	AT2G44860.2	Ribosomal protein L24e family protein 	LOC_Os07g19190.1	"ribosomal protein L24, putative, expressed"	Medtr4g073290.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7335.1.S1_at	A	A1TS	POPTR_0006s04770	POPTR_0006s04770 (11)	scaffold_6:3308001-3308512(+) (11)	NA	O22230	Heat stress transcription factor B-3	AT2G41690.1	heat shock transcription factor B3 	LOC_Os04g48030.1	"heat stress transcription factor B-1, putative, expressed"	Medtr7g108580.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.7337.1.S1_at	A	A2MS	POPTR_0012s06280	POPTR_0012s06280 (10)//POPTR_0012s06226 (9)	scaffold_12:6314695-6315260(+) (9)//scaffold_12:6486968-6487503(-) (10)	NA	P50830	Uncharacterized ATP-dependent helicase yprA	AT5G08110.1	nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases 	LOC_Os02g02150.1	"ATP-dependent helicase HRQ1, putative, expressed"	NA	NA	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.7338.1.S1_s_at	A	A1TS	POPTR_0017s11820	POPTR_0017s11820 (11)	scaffold_17:11711311-11713315(-) (11)	NA	Q8IYB8	"ATP-dependent RNA helicase SUPV3L1, mitochondrial"	AT5G39840.1	"ATP-dependent RNA helicase, mitochondrial, putative "	LOC_Os04g38630.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g006820.1	"Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.734.1.A1_at	A	A1TS	POPTR_0011s09340	POPTR_0011s09340 (11)	scaffold_11:11585280-11585349(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.7340.1.S1_at	A	A1TS	POPTR_0013s14380	POPTR_0013s14380 (10)	scaffold_13:14595768-14596115(-) (10)	NA	NA	NA	AT4G28240.1	Wound-responsive family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7341.1.S1_s_at	A	A1TS	POPTR_0016s10110	POPTR_0016s10110 (9)	scaffold_16:8267430-8267480(+) (9)	NA	NA	NA	AT3G53990.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os05g37970.3	"universal stress protein domain containing protein, putative, expressed"	Medtr7g071220.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.7341.3.S1_at	A	A1TA	POPTR_0004s19500	POPTR_0004s19500 (10)	scaffold_4:19327581-19327758(+) (10)	NA	Q9ZNU9	Zinc finger A20 and AN1 domain-containing stress-associated protein 3	AT2G27580.2	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g069850.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.7344.1.S1_s_at	A	A2TS	POPTR_0002s14080	POPTR_0014s05100 (11)//POPTR_0002s14080 (11)	scaffold_14:3886830-3889096(+) (11)//scaffold_2:10427472-10429858(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.1	casein kinase II  beta chain 1 	LOC_Os10g41520.1	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.7345.1.S1_at	A	A1TS	POPTR_0016s14600	POPTR_0016s14600 (10)	scaffold_16:13779005-13779470(+) (10)	NA	Q6C4X5	UDP-galactose transporter homolog 1	AT1G14360.1	UDP-galactose transporter 3 	LOC_Os06g39260.1	"solute carrier family 35 member B1, putative, expressed"	Medtr5g039930.1	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7345.1.S1_s_at	A	A1TS	POPTR_0016s14600	POPTR_0016s14600 (11)	scaffold_16:13778947-13779286(+) (11)	NA	Q6C4X5	UDP-galactose transporter homolog 1	AT1G14360.1	UDP-galactose transporter 3 	LOC_Os06g39260.1	"solute carrier family 35 member B1, putative, expressed"	Medtr5g039930.1	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7349.1.S1_at	A	A1MS	POPTR_0016s02900	POPTR_0016s02900 (9)	scaffold_16:1449731-1450131(+) (9)	NA	Q62383	Transcription elongation factor SPT6	AT1G65440.2	global transcription factor group B1 	LOC_Os05g41510.1	"SH2 motif, putative, expressed"	Medtr7g105590.1	"Alcohol dehydrogenase, zinc-containing; RNA binding S1; Resolvase, RNase H-like fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.735.1.S1_at	A	A1MS	POPTR_0006s14880	POPTR_0006s14880 (10)	scaffold_6:12359388-12359848(-) (10)	NA	NA	NA	AT4G29735.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g37070.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7352.1.S1_s_at	A	A1TS	POPTR_0009s09130	POPTR_0009s09130 (9)	scaffold_9:8182044-8182822(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g21020.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7355.1.S1_at	A	A1TS	POPTR_0014s07900	POPTR_0014s07900 (11)	scaffold_14:5872428-5872815(-) (11)	NA	P58137	Acyl-coenzyme A thioesterase 8	AT1G01710.1	Acyl-CoA thioesterase family protein 	LOC_Os04g47120.1	"acyl-CoA thioesterase 2, putative, expressed"	NA	NA	GO:0006637|acyl-CoA metabolic process	GO:0016291|acyl-CoA thioesterase activity	NA
Ptp.7355.1.S1_s_at	A	A1TS	POPTR_0014s07900	POPTR_0014s07900 (11)	scaffold_14:5868662-5872396(-) (11)	NA	P58137	Acyl-coenzyme A thioesterase 8	AT1G01710.1	Acyl-CoA thioesterase family protein 	LOC_Os04g47120.1	"acyl-CoA thioesterase 2, putative, expressed"	NA	NA	GO:0006637|acyl-CoA metabolic process	GO:0016291|acyl-CoA thioesterase activity	NA
Ptp.7357.1.S1_at	A	A1TS	POPTR_0007s11090	POPTR_0007s11090 (10)	scaffold_7:11353610-11353667(-) (10)	NA	NA	NA	AT3G50370.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). 	NA	NA	CU571152_13.1	hypothetical protein CU571152.5 45352-54530 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7357.1.S1_s_at	A	A1TS	POPTR_0007s11090	POPTR_0007s11090 (11)	scaffold_7:11353114-11353469(-) (11)	NA	NA	NA	AT3G50370.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). 	NA	NA	CU571152_13.1	hypothetical protein CU571152.5 45352-54530 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7358.1.S1_at	A	A1TS	POPTR_0014s15270	POPTR_0014s15270 (10)	scaffold_14:11344962-11347355(+) (10)	NA	P79051	ATP-dependent helicase rhp16	AT1G05120.1	Helicase protein with RING/U-box domain 	LOC_Os07g32730.1	"DNA repair protein rhp16, putative, expressed"	Medtr4g064720.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.7359.1.S1_at	A	A1TS	POPTR_0008s10880	POPTR_0008s10880 (11)	scaffold_8:6846024-6846566(-) (11)	NA	NA	NA	AT1G13480.1	Protein of unknown function (DUF1262) 	LOC_Os08g31880.1	conserved hypothetical protein	Medtr5g036800.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.736.2.A1_at	A	A1TS	POPTR_0005s02670	POPTR_0005s02670 (11)	scaffold_5:1706619-1706938(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.3	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7360.2.A1_a_at	A	A1TS	POPTR_0005s05290	POPTR_0005s05290 (11)	scaffold_5:3498683-3499366(-) (11)	POPTR_0013s03630 (6)	Q5M7J9	Tetratricopeptide repeat protein 35	AT3G04830.1	Protein prenylyltransferase superfamily protein 	LOC_Os02g03470.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr7g140640.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7361.1.S1_s_at	A	A1TS	POPTR_0009s13440	POPTR_0009s13440 (11)	scaffold_9:10680677-10680880(+) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022110.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.7363.1.S1_at	A	A1TS	POPTR_0007s04100	POPTR_0007s04100 (11)	scaffold_7:2459315-2459979(-) (11)	NA	NA	NA	AT1G74880.1	NAD(P)H:plastoquinone dehydrogenase complex subunit O 	LOC_Os01g72950.1	expressed protein	Medtr3g143350.1	"NDH-O, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7363.1.S1_s_at	A	A1TS	POPTR_0007s04100	POPTR_0007s04100 (11)	scaffold_7:2459976-2460928(-) (11)	NA	NA	NA	AT1G74880.1	NAD(P)H:plastoquinone dehydrogenase complex subunit O 	LOC_Os01g72950.1	expressed protein	Medtr3g143350.1	"NDH-O, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7364.1.S1_a_at	A	A1TS	POPTR_0015s04210	POPTR_0015s04210 (10)	scaffold_15:4243270-4243921(-) (10)	NA	Q9FKR0	Probable S-adenosylmethionine-dependent methyltransferase At5g38780	AT1G68040.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g21820.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.7369.1.S1_at	A	A1MA	POPTR_0004s10440	POPTR_0004s10440 (9)	scaffold_4:8994640-8995003(+) (9)	NA	Q8K4H1	Probable arylformamidase	AT5G15860.1	prenylcysteine methylesterase 	LOC_Os05g50170.2	"ATPCME, putative, expressed"	AC233657_30.1	"Carboxylesterase, type B AC233657.1 159050-155204 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7370.1.S1_at	A	A1TS	POPTR_0014s15500	POPTR_0014s15500 (10)	scaffold_14:11543255-11544714(-) (10)	NA	NA	NA	AT2G32640.1	Lycopene beta/epsilon cyclase protein 	LOC_Os08g32630.1	"FAD dependent oxidoreductase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7372.1.S1_at	A	A1TS	POPTR_0019s15170	POPTR_0019s15170 (10)	scaffold_19:15740620-15740993(+) (10)	NA	Q2V0W1	Pheophorbidase	AT3G10870.1	methyl esterase 17 	LOC_Os11g02570.1	"esterase, putative, expressed"	Medtr5g076890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7372.2.S1_a_at	A	A1TS	POPTR_0019s15170	POPTR_0019s15170 (9)	scaffold_19:15741117-15741647(+) (9)	NA	Q2V0W1	Pheophorbidase	AT3G10870.1	methyl esterase 17 	LOC_Os11g02570.1	"esterase, putative, expressed"	Medtr5g076890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7372.2.S1_at	A	A1TS	POPTR_0019s15170	POPTR_0019s15170 (11)	scaffold_19:15741584-15742090(+) (11)	NA	Q2V0W1	Pheophorbidase	AT3G10870.1	methyl esterase 17 	LOC_Os11g02570.1	"esterase, putative, expressed"	Medtr5g076890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7373.1.S1_s_at	A	A1TS	POPTR_0001s09070	POPTR_0001s09070 (11)	scaffold_1:6941930-6943016(-) (11)	NA	NA	NA	AT1G63260.2	tetraspanin10 	LOC_Os10g35980.1	"tetraspanin family protein, putative, expressed"	Medtr8g078110.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.7375.2.A1_at	A	A1MA	POPTR_0002s05810	POPTR_0002s05810 (11)	scaffold_2:3807974-3808221(+) (11)	NA	NA	NA	AT4G39235.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g51459.1	conserved hypothetical protein	Medtr3g005030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7376.1.S1_a_at	A	A2TS	POPTR_0018s10330	POPTR_0018s10330 (11)//POPTR_0018s10320 (9)	scaffold_18:11254660-11261155(+) (11)//scaffold_18:11260769-11261147(+) (9)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.7377.1.S1_at	A	A1TS	POPTR_0002s11020	POPTR_0002s11020 (11)	scaffold_2:8026037-8026564(-) (11)	NA	Q3EDF8	Pentatricopeptide repeat-containing protein At1g09900	AT1G09900.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os02g35750.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g093590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7378.1.S1_at	A	A1TS	POPTR_0002s18970	POPTR_0002s18970 (10)	scaffold_2:14864650-14864969(+) (10)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7379.2.A1_a_at	A	A1TS	POPTR_0002s09750	POPTR_0002s09750 (11)	scaffold_2:6993693-6994361(+) (11)	NA	Q9S9Z7	Probable protein phosphatase 2C 10	AT1G34750.1	Protein phosphatase 2C family protein 	LOC_Os04g37904.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.738.1.A1_at	A	A1TS	POPTR_0005s24060	POPTR_0005s24060 (11)	scaffold_5:22719444-22719843(-) (11)	NA	Q9C889	PRA1 family protein F2	AT1G55190.1	PRA1 (Prenylated rab acceptor) family protein 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7380.1.S1_s_at	A	A1TS	POPTR_0007s01460	POPTR_0007s01460 (11)	scaffold_7:821512-823720(-) (11)	NA	Q9NU19	TBC1 domain family member 22B	AT2G30710.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g34040.1	"TBC domain containing protein, expressed"	Medtr2g120560.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.7382.1.S1_at	A	A2TS	POPTR_0006s21080	POPTR_0016s06190 (9)//POPTR_0006s21080 (9)	scaffold_16:4141639-4142011(+) (9)//scaffold_6:20179225-20179645(+) (9)	NA	P48578	Serine/threonine-protein phosphatase PP2A-3 catalytic subunit	AT3G58500.1	protein phosphatase 2A-4 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	AC235488_34.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase AC235488.1 160871-167050 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
Ptp.7383.1.S1_s_at	A	A1TS	POPTR_0004s20830	POPTR_0004s20830 (11)	scaffold_4:20210700-20211260(+) (11)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20780.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.7385.1.S1_at	A	A1TS	POPTR_0018s02840	POPTR_0018s02840 (9)	scaffold_18:2503983-2504259(+) (9)	NA	Q6K687	Zinc finger CCCH domain-containing protein 18	AT2G24830.1	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein 	LOC_Os02g55000.1	"zinc finger CCCH-type with G patch domain-containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.7386.1.S1_at	A	A1TS	POPTR_0005s25770	POPTR_0005s25770 (9)	scaffold_5:23964794-23965830(-) (9)	NA	NA	NA	AT5G39590.1	TLD-domain containing nucleolar protein 	LOC_Os04g56790.1	"TLD family protein, putative, expressed"	Medtr3g144020.1	TLDc 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7387.1.S1_s_at	A	A1TS	POPTR_0002s19370	POPTR_0002s19370 (11)	scaffold_2:15332020-15332678(-) (11)	NA	NA	NA	AT3G62330.1	Zinc knuckle (CCHC-type) family protein 	LOC_Os01g14920.1	"zinc knuckle family protein, putative, expressed"	Medtr7g133280.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.7389.1.S1_at	A	A2TS	POPTR_0013s04640	POPTR_0019s03850 (11)//POPTR_0013s04640 (11)	scaffold_13:3195386-3195764(+) (11)//scaffold_19:3903170-3903552(+) (11)	NA	Q54MZ3	Anaphase-promoting complex subunit cdc20	AT4G33270.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g47180.2	"WD repeat-containing protein, putative, expressed"	Medtr5g008110.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.739.1.A1_at	A	A1TS	POPTR_0001s47180	POPTR_0001s47180 (11)	scaffold_1:47462990-47463034(-) (11)	NA	O81635	Kinesin-4	AT3G44730.1	kinesin-like protein 1 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr3g080190.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.7393.1.S1_at	A	A1TS	POPTR_0002s20270	POPTR_0002s20270 (11)	scaffold_2:16256253-16256766(-) (11)	NA	P42736	Ethylene-responsive transcription factor RAP2-3	AT3G16770.1	ethylene-responsive element binding protein 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr1g107940.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.7396.1.S1_at	A	A1TS	POPTR_0005s22700	POPTR_0005s22700 (10)	scaffold_5:21593853-21594357(+) (10)	NA	NA	NA	AT2G30880.1	Pleckstrin homology (PH) domain-containing protein 	LOC_Os03g46340.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g098210.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7396.2.S1_at	A	A1TS	POPTR_0005s22700	POPTR_0005s22700 (11)	scaffold_5:21587382-21592553(+) (11)	NA	NA	NA	AT2G30880.1	Pleckstrin homology (PH) domain-containing protein 	LOC_Os03g46340.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g098210.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7397.1.S1_at	A	A1MA	POPTR_0008s21210	POPTR_0008s21210 (9)	scaffold_8:15409437-15409671(+) (9)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.740.1.A1_at	A	A1TS	POPTR_0014s04230	POPTR_0014s04230 (11)	scaffold_14:3323653-3324943(-) (11)	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	NA	GO:0004721|phosphoprotein phosphatase activity	NA
Ptp.7402.1.S1_at	A	A2TS	POPTR_0015s08350	POPTR_0704s00200 (11)//POPTR_0015s08350 (11)	scaffold_15:9603998-9604083(+) (11)//scaffold_704:3680-3765(-) (11)	NA	NA	NA	AT5G62575.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7403.1.A1_at	A	A1TS	POPTR_0002s24210	POPTR_0002s24210 (11)	scaffold_2:21631021-21631445(+) (11)	NA	Q8LDV3	"Uncharacterized protein At4g13200, chloroplastic"	AT4G13200.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os04g43350.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7404.1.S1_at	A	A1TS	POPTR_0003s12880	POPTR_0003s12880 (11)	scaffold_3:13326446-13327560(+) (11)	NA	Q9HBH5	Retinol dehydrogenase 14	AT4G23430.3	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g40030.8	"short chain dehydrogenase/reductase protein, putative, expressed"	Medtr3g114440.2	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7405.1.S1_at	A	A1TS	POPTR_0011s05250	POPTR_0011s05250 (11)	scaffold_11:5135895-5136823(+) (9)	NA	Q05758	"Ketol-acid reductoisomerase, chloroplastic"	AT3G58610.3	ketol-acid reductoisomerase 	LOC_Os05g49800.1	"ketol-acid reductoisomerase, chloroplast precursor, putative, expressed"	Medtr4g109610.1	Acetohydroxy acid isomeroreductase; ; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009082|branched chain family amino acid biosynthetic process	GO:0004455|ketol-acid reductoisomerase activity	NA
Ptp.7408.1.A1_a_at	A	A1TS	POPTR_0001s25460	POPTR_0001s25460 (11)	scaffold_1:24578308-24578464(+) (11)	NA	Q304B9	Neutral ceramidase	AT1G07380.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7408.3.A1_at	A	A1TS	POPTR_0001s25460	POPTR_0001s25460 (10)	scaffold_1:24574723-24578427(+) (10)	NA	Q304B9	Neutral ceramidase	AT1G07380.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7409.1.S1_s_at	A	A1TS	POPTR_0003s21230	POPTR_0003s21230 (11)	scaffold_3:19478446-19478760(-) (11)	NA	Q9R1C0	Transcription initiation factor TFIID subunit 7	AT1G55300.1	TBP-associated factor 7 	LOC_Os05g28010.1	"TATA-binding protein-associated factor TAFII55 family protein, putative, expressed"	Medtr3g105320.1	TAFII55 protein conserved region 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0016251|general RNA polymerase II transcription factor activity	GO:0005669|transcription factor TFIID complex
Ptp.7410.1.S1_at	A	A1TS	POPTR_0009s14710	POPTR_0009s14710 (9)	scaffold_9:11461608-11461977(+) (9)	NA	Q9LXN4	Protein HIRA	AT3G44530.2	homolog of histone chaperone HIRA 	LOC_Os09g39420.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC235092_11.1	TUP1-like enhancer of split AC235092.1 68028-61680 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.7411.1.S1_at	A	A1TS	POPTR_0007s04980	POPTR_0007s04980 (9)	scaffold_7:3162955-3163106(-) (9)	POPTR_0005s07250 (6)	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os08g37605.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr2g009300.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
Ptp.7411.1.S1_s_at	A	A1TS	POPTR_0007s04980	POPTR_0007s04980 (10)	scaffold_7:3162644-3162933(-) (10)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os08g37605.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr2g009300.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
Ptp.7412.1.S1_at	A	A1TS	POPTR_0002s13990	POPTR_0002s13990 (10)	scaffold_2:10377546-10379268(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7415.1.S1_at	A	A1TS	POPTR_0001s10960	POPTR_0001s10960 (11)	scaffold_1:8498431-8498935(+) (11)	NA	Q84TI6	Cyclin-dependent kinase E-1	AT5G63610.1	cyclin-dependent kinase E;1 	LOC_Os10g42950.1	"cyclin-dependent kinase E-1, putative, expressed"	Medtr3g142590.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7417.1.S1_s_at	A	A1TS	POPTR_0002s10460	POPTR_0002s10460 (11)	scaffold_2:7550982-7551277(-) (11)	NA	Q54PY7	Probable mitochondrial 2-oxoglutarate/malate carrier protein	AT4G24570.1	dicarboxylate carrier 2 	LOC_Os08g37370.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g149100.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7418.1.S1_at	A	A1TS	POPTR_0002s05730	POPTR_0002s05730 (10)	scaffold_2:3757874-3758266(+) (10)	NA	NA	NA	NA	NA	LOC_Os07g06644.3	expressed protein	Medtr5g097840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.742.1.A1_at	A	A1TS	POPTR_0009s00680	POPTR_0009s00680 (11)	scaffold_9:758464-760401(-) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G22850.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7420.1.S1_s_at	A	A1TS	POPTR_0001s14030	POPTR_0001s14030 (11)	scaffold_1:11041821-11041925(-) (11)	NA	Q0MQ90	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	AT1G04630.1	GRIM-19 protein 	LOC_Os03g09210.1	"NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7421.1.S1_s_at	A	A1TS	POPTR_0006s06620	POPTR_0006s06620 (11)	scaffold_6:4807689-4807958(-) (11)	NA	P29602	Cucumber peeling cupredoxin	AT5G20230.1	blue-copper-binding protein 	LOC_Os05g49580.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.7422.1.S1_at	A	A1TS	POPTR_0001s10530	POPTR_0001s10530 (11)	scaffold_1:8166852-8168136(-) (11)	NA	Q9FGM1	Abscisic acid receptor PYL8	AT5G53160.2	regulatory components of ABA receptor 3 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7423.1.A1_at	A	A1TS	POPTR_0001s41150	POPTR_0001s41150 (11)	scaffold_1:40794470-40795647(+) (11)	NA	Q6MD00	3-deoxy-manno-octulosonate cytidylyltransferase	AT1G53000.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os05g48750.1	"3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0009103|lipopolysaccharide biosynthetic process	NA	NA
Ptp.7424.1.S1_at	A	A1TS	POPTR_0001s32970	POPTR_0001s32970 (11)	scaffold_1:31226482-31228095(-) (11)	NA	Q9SDS7	V-type proton ATPase subunit C	AT1G12840.1	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) 	LOC_Os05g51530.2	"vacuolar ATP synthase subunit C, putative, expressed"	Medtr7g096730.1	V-ATPase subunit C 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	"GO:0033180|""proton-transporting V-type ATPase, V1 domain"""
Ptp.7429.1.S1_s_at	A	A1TS	POPTR_0017s04720	POPTR_0017s04720 (11)	scaffold_17:3618998-3619128(-) (11)	NA	Q6LA43	Two-component response regulator-like APRR2	AT2G20570.1	GBF's pro-rich region-interacting factor 1 	LOC_Os06g24070.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr4g108850.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7433.1.S1_at	A	A1TS	POPTR_0019s05950	POPTR_0019s05950 (11)	scaffold_19:6365482-6365517(-) (11)	NA	NA	NA	AT5G17170.1	rubredoxin family protein 	LOC_Os08g06530.1	"rubredoxin family protein, putative, expressed"	Medtr5g008150.1	PDZ/DHR/GLGF; Rubredoxin-type Fe(Cys)4 protein 	NA	GO:0046872|metal ion binding||GO:0009055|electron carrier activity	NA
Ptp.7433.1.S1_s_at	A	A1TS	POPTR_0019s05950	POPTR_0019s05950 (11)	scaffold_19:6365625-6366284(-) (11)	NA	NA	NA	AT5G17170.1	rubredoxin family protein 	LOC_Os08g06530.1	"rubredoxin family protein, putative, expressed"	Medtr5g008150.1	PDZ/DHR/GLGF; Rubredoxin-type Fe(Cys)4 protein 	NA	GO:0046872|metal ion binding||GO:0009055|electron carrier activity	NA
Ptp.7434.1.A1_s_at	A	A1TS	POPTR_0003s11080	POPTR_0003s11080 (11)	scaffold_3:11943844-11944261(+) (11)	NA	Q05085	Nitrate transporter 1.1	AT1G12110.1	nitrate transporter 1.1 	LOC_Os08g05910.1	"peptide transporter PTR2, putative, expressed"	Medtr5g012420.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.7439.1.S1_at	A	A1TS	POPTR_0012s04010	POPTR_0012s04010 (11)	scaffold_12:3238167-3238203(+) (11)	NA	Q8RXG3	Mitogen-activated protein kinase kinase 5	AT1G73500.1	MAP kinase kinase 9 	LOC_Os03g12390.1	"STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g080600.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7440.1.S1_at	A	A1TS	POPTR_0009s11280	POPTR_0009s11280 (9)	scaffold_9:9434845-9435382(+) (9)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT5G42650.1	allene oxide synthase 	LOC_Os03g55800.1	"cytochrome P450, putative, expressed"	Medtr4g093070.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7441.1.S1_at	A	A1TS	POPTR_0001s42800	POPTR_0001s42800 (11)	scaffold_1:42825414-42825656(-) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7442.1.S1_at	A	A1TS	POPTR_0001s47020	POPTR_0001s47020 (11)	scaffold_1:47349559-47349758(+) (11)	NA	P36181	Heat shock cognate protein 80	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
Ptp.7443.1.S1_at	A	A1TS	POPTR_0001s13060	POPTR_0001s13060 (9)	scaffold_1:10143610-10144132(+) (9)	NA	NA	NA	AT2G33550.1	Homeodomain-like superfamily protein 	LOC_Os02g31160.1	"transcription factor, putative"	Medtr7g020740.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7444.1.S1_s_at	A	A1TS	POPTR_0002s03340	POPTR_0002s03340 (11)	scaffold_2:2059883-2060703(-) (11)	POPTR_0005s25270 (6)	Q40517	Mitogen-activated protein kinase homolog NTF3	AT1G10210.2	mitogen-activated protein kinase 1 	LOC_Os06g48590.2	"CGMC_MAPKCMGC_2_SLT2y_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g134400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7446.1.S1_s_at	A	A2TS	POPTR_0012s10740	POPTR_0012s10740 (11)//POPTR_0012s10750 (9)	scaffold_12:11437987-11438386(-) (11)//scaffold_12:11444818-11445217(-) (9)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g61740.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr6g025640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7449.1.S1_s_at	A	A1TS	POPTR_0010s01450	POPTR_0010s01450 (11)	scaffold_10:1584221-1585940(-) (11)	NA	Q86I22	Fumarylacetoacetate hydrolase domain-containing protein 1 homolog	AT4G15940.1	Fumarylacetoacetate (FAA) hydrolase family 	LOC_Os03g61330.2	"fumarylacetoacetase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.745.1.A1_at	A	A1TS	POPTR_0001s40980	POPTR_0001s40980 (9)	scaffold_1:40555119-40555253(+) (9)	NA	B9N1F9	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1	AT5G53850.2	haloacid dehalogenase-like hydrolase family protein 	LOC_Os11g29370.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0046872|metal ion binding	NA
Ptp.7451.1.A1_s_at	A	A1TS	POPTR_0002s00760	POPTR_0002s00760 (11)	scaffold_2:348911-349405(+) (11)	POPTR_0005s27680 (6)	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os02g13560.4	"transporter family protein, putative, expressed"	Medtr3g159920.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.7453.1.S1_at	A	A1TS	POPTR_0018s12210	POPTR_0018s12210 (10)	scaffold_18:12757101-12757628(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g122650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7454.1.S1_at	A	A1TS	POPTR_0006s21980	POPTR_0006s21980 (11)	scaffold_6:20999786-21000211(+) (11)	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7454.1.S1_s_at	A	A1TS	POPTR_0006s21980	POPTR_0006s21980 (11)	scaffold_6:20999999-21000237(+) (11)	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7456.1.S1_s_at	A	A1TS	POPTR_0012s14960	POPTR_0012s14960 (11)	scaffold_12:14650024-14650176(-) (11)	NA	Q39732	"Glycine cleavage system H protein, mitochondrial"	AT2G35120.1	Single hybrid motif superfamily protein 	LOC_Os02g07410.1	"glycine cleavage system H protein, putative, expressed"	Medtr4g114460.1	Glycine cleavage H-protein 	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
Ptp.7459.1.A1_at	A	A1TS	POPTR_0016s12490	POPTR_0016s12490 (10)	scaffold_16:11943110-11943445(-) (10)	NA	P48620	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.746.1.A1_at	A	A1TS	POPTR_0004s17580	POPTR_0004s17580 (11)	scaffold_4:17722618-17723153(+) (11)	NA	P45434	Translocon-associated protein subunit alpha	AT2G16595.1	"Translocon-associated protein (TRAP), alpha subunit "	LOC_Os06g50154.1	"translocon-associated protein subunit alpha precursor, putative, expressed"	Medtr3g163280.1	"Translocon-associated protein subunit alpha precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7462.1.S1_s_at	A	A1TS	POPTR_0003s07950	POPTR_0003s07950 (11)	scaffold_3:9446399-9446660(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7466.1.S1_at	A	A1TS	POPTR_0002s25200	POPTR_0002s25200 (11)	scaffold_2:22365146-22366575(+) (11)	NA	NA	NA	AT3G07440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48530.1); Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g27740.1	expressed protein	Medtr8g011920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7467.1.S1_a_at	A	A1TS	POPTR_0006s12080	POPTR_0006s12080 (11)	scaffold_6:9228496-9229172(-) (11)	NA	Q3EBL9	Vacuolar protein-sorting-associated protein 37 homolog 2	AT2G36680.1	Modifier of rudimentary (Mod(r)) protein 	LOC_Os03g08770.1	"modifier of rudimentary protein, expressed"	Medtr7g124470.1	"Modifier of rudimentary, Modr "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7468.1.S1_at	A	A1TS	POPTR_0006s29520	POPTR_0006s29520 (11)	scaffold_6:26868884-26869215(+) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7468.1.S1_s_at	A	A1TS	POPTR_0006s29520	POPTR_0006s29520 (11)	scaffold_6:26868969-26869314(+) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7469.1.S1_at	A	A1TS	POPTR_0017s00260	POPTR_0017s00260 (10)	scaffold_17:52499-54050(+) (10)	POPTR_0017s00280 (7)	Q39172	Probable NADP-dependent oxidoreductase P1	AT5G16970.1	alkenal reductase 	LOC_Os12g12580.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.747.1.S1_at	A	A1TS	POPTR_0006s08000	POPTR_0006s08000 (9)	scaffold_6:5848074-5848573(+) (9)	NA	Q6NLD5	Ethylene-responsive transcription factor ERF015	AT4G31060.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr2g050010.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.7472.1.S1_at	A	A1TS	POPTR_0009s10390	POPTR_0009s10390 (10)	scaffold_9:8924970-8925424(+) (10)	NA	Q5XJ36	Protein DJ-1	AT4G34020.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os05g44330.5	"DJ-1 family protein, putative, expressed"	Medtr4g129930.1	ThiJ/PfpI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7474.2.S1_at	A	A1MS	POPTR_0001s47420	POPTR_0001s47420 (9)	scaffold_1:47628142-47628600(+) (9)	NA	O75629	Protein CREG1	AT2G04690.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os06g13100.1	"CREG1 precursor, putative, expressed"	Medtr7g029710.1	FMN-binding split barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7476.1.A1_at	A	A1TS	POPTR_0005s26420	POPTR_0005s26420 (9)	scaffold_5:24456771-24457298(+) (9)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G20110.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g50840.1	"zinc finger family protein, putative, expressed"	Medtr3g156570.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7476.1.A1_s_at	A	A2TS	POPTR_0002s02040	POPTR_0002s02040 (11)//POPTR_0005s26420 (11)	scaffold_2:1091557-1091735(-) (11)//scaffold_5:24457305-24457480(+) (10)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G20110.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g50840.1	"zinc finger family protein, putative, expressed"	Medtr3g156570.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7478.1.S1_at	A	A1TS	POPTR_0006s23640	POPTR_0006s23640 (11)	scaffold_6:22355607-22356026(+) (11)	NA	NA	NA	AT5G21940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g35630.1	"MTD1, putative, expressed"	Medtr1g019780.1	"MTD1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7478.2.S1_s_at	A	A1TS	POPTR_0006s23640	POPTR_0006s23640 (11)	scaffold_6:22356145-22356542(+) (11)	NA	NA	NA	AT5G21940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g35630.1	"MTD1, putative, expressed"	Medtr1g019780.1	"MTD1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.748.1.S1_s_at	A	A1TS	POPTR_0008s19770	POPTR_0008s19770 (9)	scaffold_8:13639298-13639430(+) (9)	NA	NA	NA	AT1G70180.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g39090.1	"SAM domain containing protein, putative, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7480.1.S1_s_at	A	A1TS	POPTR_0007s04180	POPTR_0007s04180 (11)	scaffold_7:2519873-2520344(+) (11)	NA	NA	NA	AT5G44860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os08g01590.2	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7484.1.S1_s_at	A	A1TS	POPTR_0014s08380	POPTR_0014s08380 (11)	scaffold_14:6243992-6245193(+) (11)	NA	Q4ADV7	Protein RIC1 homolog	AT5G28350.2	"Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor "	LOC_Os02g54500.1	"WD40-like, putative, expressed"	Medtr7g087880.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7485.1.S1_at	A	A1TA	POPTR_0013s04140	POPTR_0013s04140 (9)	scaffold_13:2762397-2762872(-) (9)	NA	Q9ZTP3	Protein EIN4	AT3G04580.2	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os04g08740.2	"ethylene receptor, putative, expressed"	Medtr1g093360.1	"Tripartite hybrid signal transduction histidine kinase, BarA type; Bacteriophytochrome "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.7487.1.S1_at	A	A1TS	POPTR_0006s20900	POPTR_0006s20900 (10)	scaffold_6:19946096-19946663(+) (10)	NA	NA	NA	AT3G58050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41; Bacteria - 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses - 46; Other Eukaryotes - 4915 (source: NCBI BLink). 	LOC_Os10g01610.1	expressed protein	Medtr7g112300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7489.1.S1_at	A	A1TS	POPTR_0003s14190	POPTR_0003s14190 (10)	scaffold_3:14316639-14317569(+) (10)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7493.1.S1_s_at	A	A1TS	POPTR_0003s12620	POPTR_0003s12620 (11)	scaffold_3:13137595-13137634(+) (11)	NA	O48646	"Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial"	AT4G11600.1	glutathione peroxidase 6 	LOC_Os04g46960.2	"glutathione peroxidase domain containing protein, expressed"	Medtr4g149540.3	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
Ptp.7493.1.S1_x_at	A	A1TS	POPTR_0003s12620	POPTR_0003s12620 (11)	scaffold_3:13136670-13137674(+) (11)	NA	O48646	"Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial"	AT4G11600.1	glutathione peroxidase 6 	LOC_Os04g46960.2	"glutathione peroxidase domain containing protein, expressed"	Medtr4g149540.3	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
Ptp.7495.1.S1_at	A	A1TS	POPTR_0009s11180	POPTR_0009s11180 (9)	scaffold_9:9380664-9381022(+) (9)	NA	NA	NA	AT4G31970.1	"cytochrome P450, family 82, subfamily C, polypeptide 2 "	NA	NA	Medtr6g009150.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.75.2.S1_at	A	A1MS	POPTR_0014s09650	POPTR_0014s09650 (10)	scaffold_14:7203323-7203849(-) (10)	NA	O42901	Uncharacterized protein C119.09c	AT1G01230.1	ORMDL family protein 	LOC_Os04g47970.1	"ORM1, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
Ptp.750.1.S1_s_at	A	A1TS	POPTR_0010s15830	POPTR_0010s15830 (11)	scaffold_10:14941765-14941804(+) (11)	NA	NA	NA	AT1G47970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 93717 Blast hits to 40765 proteins in 1891 species: Archae - 1046; Bacteria - 16276; Metazoa - 26677; Fungi - 16127; Plants - 6028; Viruses - 1519; Other Eukaryotes - 26044 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7500.1.S1_at	A	A1TS	POPTR_0006s26740	POPTR_0006s26740 (11)	scaffold_6:24856027-24856637(-) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os12g41230.3	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr1g013510.1	"Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7501.1.S1_s_at	A	A1TS	POPTR_0002s24090	POPTR_0002s24090 (11)	scaffold_2:21534843-21535320(-) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07380.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7504.1.S1_at	A	A1TS	POPTR_0010s24250	POPTR_0010s24250 (9)	scaffold_10:20561150-20561459(+) (9)	NA	NA	NA	AT5G22510.1	alkaline/neutral invertase 	LOC_Os02g32730.1	"neutral/alkaline invertase, putative, expressed"	Medtr4g141220.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7506.1.S1_s_at	A	A1TS	POPTR_0001s12640	POPTR_0001s12640 (11)	scaffold_1:9786040-9786485(-) (11)	NA	Q8LNZ5	Probable xyloglucan endotransglucosylase/hydrolase protein B	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099560.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.7507.1.S1_at	A	A1TS	POPTR_0005s14120	POPTR_0005s14120 (10)	scaffold_5:11195451-11195915(+) (10)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G37180.1	Homeodomain-like superfamily protein 	LOC_Os03g55590.1	"MYB family transcription factor, putative, expressed"	Medtr4g129010.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7509.2.S1_a_at	A	A1TS	POPTR_0014s11700	POPTR_0014s11700 (11)	scaffold_14:8674795-8675344(-) (11)	NA	NA	NA	AT1G02610.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g19800.1	"zinc finger, C3HC4 type, putative, expressed"	Medtr1g106880.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7509.3.S1_a_at	A	A1TS	POPTR_0014s11700	POPTR_0014s11700 (11)	scaffold_14:8672414-8674761(-) (11)	NA	NA	NA	AT1G02610.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g19800.1	"zinc finger, C3HC4 type, putative, expressed"	Medtr1g106880.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.751.2.S1_at	A	A1TS	POPTR_0002s02040	POPTR_0002s02040 (11)	scaffold_2:1095843-1096224(-) (11)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G20110.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g50840.1	"zinc finger family protein, putative, expressed"	Medtr3g156570.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7510.1.S1_at	A	A1TS	POPTR_0008s01540	POPTR_0008s01540 (11)	scaffold_8:768705-768741(+) (11)	NA	NA	NA	AT3G10650.1	BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). 	LOC_Os03g57430.1	expressed protein	Medtr1g112090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7510.1.S1_s_at	A	A1TS	POPTR_0008s01540	POPTR_0008s01540 (9)	scaffold_8:768255-768656(+) (9)	NA	NA	NA	AT3G10650.1	BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). 	LOC_Os03g57430.1	expressed protein	Medtr1g112090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7511.2.S1_a_at	A	A1TS	POPTR_0017s03000	POPTR_0017s03000 (11)	scaffold_17:2175789-2176283(+) (11)	NA	Q6NLC8	Uncharacterized protein At1g66480	AT1G66480.1	plastid movement impaired 2 	LOC_Os08g33210.1	expressed protein	Medtr5g087100.1	"Uncharacterized protein At1g66480, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7517.1.A1_at	A	A1TS	POPTR_0001s35830	POPTR_0001s35830 (11)	scaffold_1:34190089-34191031(+) (11)	NA	Q04836	"31 kDa ribonucleoprotein, chloroplastic"	AT4G24770.1	31-kDa RNA binding protein 	LOC_Os09g39180.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g076830.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7521.1.S1_at	A	A1TS	POPTR_0005s09740	POPTR_0005s09740 (9)	scaffold_5:6839266-6839822(+) (9)	NA	Q8RXF1	Probable splicing factor 3A subunit 1	AT1G14650.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein 	LOC_Os02g14780.2	"splicing factor 3 subunit 1, putative, expressed"	Medtr4g156190.1	SWAP/Surp; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.7523.1.A1_a_at	A	A1TS	POPTR_0018s05010	POPTR_0018s05010 (10)	scaffold_18:4432167-4432431(-) (10)	NA	Q8UVD9	Far upstream element-binding protein 2	AT2G25970.1	KH domain-containing protein 	LOC_Os02g13130.1	"KH domain-containing protein, putative, expressed"	Medtr1g020830.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.7525.1.S1_at	A	A1TS	POPTR_0006s04790	POPTR_0006s04790 (11)	scaffold_6:3311730-3313386(-) (11)	NA	Q84M24	ABC transporter A family member 1	AT2G41700.1	ATP-binding cassette A1 	LOC_Os06g38950.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g112400.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.7526.1.S1_at	A	A1TS	POPTR_0002s10080	POPTR_0002s10080 (11)	scaffold_2:7246113-7246476(-) (11)	NA	Q940J1	Homeobox-leucine zipper protein ATHB-16	AT4G40060.1	homeobox protein 16 	LOC_Os08g37580.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g110250.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.7527.1.S1_at	A	A1TS	POPTR_0007s11790	POPTR_0007s11790 (10)	scaffold_7:12173203-12173246(-) (10)	NA	Q39088	Dof zinc finger protein DOF3.4	AT3G50410.1	OBF binding protein 1 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	AC235757_43.1	"Zinc finger, Dof-type AC235757.1 157398-155752 E EGN_Mt090430 200"	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.7527.1.S1_s_at	A	A1TS	POPTR_0007s11790	POPTR_0007s11790 (10)	scaffold_7:12172679-12173177(-) (10)	NA	Q39088	Dof zinc finger protein DOF3.4	AT3G50410.1	OBF binding protein 1 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	AC235757_43.1	"Zinc finger, Dof-type AC235757.1 157398-155752 E EGN_Mt090430 200"	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.7528.1.S1_s_at	A	A1TS	POPTR_0009s12880	POPTR_0009s12880 (11)	scaffold_9:10423677-10424110(+) (11)	NA	P33083	Auxin-induced protein 6B	AT1G75590.1	SAUR-like auxin-responsive protein family  	LOC_Os04g56680.1	"OsSAUR22 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g097600.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7530.1.S1_x_at	A	A1TS	POPTR_0001s42980	POPTR_0001s42980 (11)	scaffold_1:43046467-43048270(+) (11)	NA	Q40519	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.7533.1.S1_at	A	A1TS	POPTR_0006s11500	POPTR_0006s11500 (11)	scaffold_6:8715796-8716205(+) (11)	NA	Q2Z2E9	Protein SCARECROW	AT5G41920.1	GRAS family transcription factor 	LOC_Os11g03110.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g081070.1	Flagellar basal body rod protein; GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7534.1.S1_at	A	A2MS	POPTR_0003s01980	POPTR_0003s01980 (11)//POPTR_0027s00240 (11)	scaffold_27:45514-45554(-) (11)//scaffold_3:1878704-1878744(+) (11)	POPTR_0003s02000 (8)//POPTR_0003s02140 (8)	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7534.1.S1_s_at	A	A3TS	POPTR_0003s02000	POPTR_0003s02000 (11)//POPTR_0027s00370 (11)//POPTR_0003s02140 (9)	scaffold_27:164305-173370(-) (11)//scaffold_27:247120-253950(-) (10)//scaffold_3:1897986-1898262(+) (11)//scaffold_3:2136027-2136287(+) (11)//scaffold_3:2255916-2256038(+) (9)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7535.1.S1_at	A	A1TS	POPTR_0003s08890	POPTR_0003s08890 (11)	scaffold_3:10212232-10212887(+) (11)	NA	NA	NA	AT1G32540.3	lsd one like 1 	LOC_Os08g06280.3	"LSD1 zinc finger domain containing protein, expressed"	Medtr8g102780.1	"Zinc finger, LSD1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7536.1.A1_s_at	A	A1TS	POPTR_0015s13170	POPTR_0015s13170 (11)	scaffold_15:13234916-13235885(+) (11)	NA	P93788	Remorin	AT5G23750.2	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7537.1.S1_at	A	A1TS	POPTR_0005s17740	POPTR_0005s17740 (11)	scaffold_5:15443992-15445145(-) (11)	NA	Q96451	14-3-3-like protein B (Fragment)	AT5G65430.1	general regulatory factor 8 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g149020.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.7537.1.S1_s_at	A	A1TS	POPTR_0005s17740	POPTR_0005s17740 (11)	scaffold_5:15443656-15443745(-) (11)	NA	Q96451	14-3-3-like protein B (Fragment)	AT5G65430.1	general regulatory factor 8 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g149020.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.7537.1.S1_x_at	A	A1TS	POPTR_0005s17740	POPTR_0005s17740 (11)	scaffold_5:15443593-15445145(-) (11)	NA	Q96451	14-3-3-like protein B (Fragment)	AT5G65430.1	general regulatory factor 8 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g149020.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.7538.1.S1_at	A	A1TS	POPTR_0007s00280	POPTR_0007s00280 (10)	scaffold_7:74390-74796(+) (10)	NA	Q9M1Y3	F-box/ankyrin repeat protein SKIP35	AT3G59910.1	Ankyrin repeat family protein 	LOC_Os11g14180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.754.1.S1_a_at	A	A1TS	POPTR_0008s08940	POPTR_0008s08940 (11)	scaffold_8:5553033-5553077(+) (11)	NA	Q6P4K8	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	AT1G26550.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g24540.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g090170.1	PpiC-type peptidyl-prolyl cis-trans isomerase 	NA	GO:0016853|isomerase activity	NA
Ptp.7540.1.S1_at	A	A1TS	POPTR_0011s00730	POPTR_0011s00730 (11)	scaffold_11:370254-370715(+) (11)	NA	NA	NA	AT4G22320.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1). 	LOC_Os08g25080.1	expressed protein	Medtr2g029560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7543.2.S1_at	A	A1TS	POPTR_0016s09310	POPTR_0016s09310 (11)	scaffold_16:7321720-7321844(+) (11)	NA	NA	NA	AT5G03345.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g37880.1	expressed protein	Medtr7g123870.1	"AAA ATPase VAT, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7543.2.S1_s_at	A	A1TS	POPTR_0016s09310	POPTR_0016s09310 (11)	scaffold_16:7321746-7321982(+) (11)	NA	NA	NA	AT5G03345.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g37880.1	expressed protein	Medtr7g123870.1	"AAA ATPase VAT, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7544.1.S1_at	A	A1TS	POPTR_0001s09350	POPTR_0001s09350 (11)	scaffold_1:7141074-7141271(-) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT4G11570.2	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os09g39560.1	"genetic modifier, putative, expressed"	Medtr4g149420.1	Histidine acid phosphatase; Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.7545.1.S1_at	A	A1TS	POPTR_0008s16510	POPTR_0008s16510 (10)	scaffold_8:11086236-11087005(+) (10)	NA	NA	NA	AT1G04340.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7546.1.S1_s_at	A	A1TS	POPTR_0005s07160	POPTR_0005s07160 (11)	scaffold_5:4816873-4817469(+) (11)	NA	Q9STN5	"Uncharacterized protein At4g08330, chloroplastic"	AT4G08330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g61680.1	expressed protein	Medtr3g100830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7547.1.S1_at	A	A1TS	POPTR_0012s01730	POPTR_0012s01730 (11)	scaffold_12:1306153-1307171(-) (11)	POPTR_0015s00210 (6)	Q94BN2	Spermine synthase	AT5G53120.5	spermidine synthase 3 	LOC_Os02g15550.2	"spermidine synthase, putative, expressed"	Medtr3g124370.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.7548.1.S1_at	A	A1TS	POPTR_0003s05190	POPTR_0003s05190 (11)	scaffold_3:6416387-6416922(+) (11)	NA	Q8LEM8	60S ribosomal protein L37-3	AT1G52300.1	Zinc-binding ribosomal protein family protein 	LOC_Os02g56990.1	"ribosomal protein L37, putative, expressed"	Medtr4g009180.1	Ribosomal protein L37e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7549.1.S1_at	A	A1MS	POPTR_0003s15630	POPTR_0003s15630 (10)	scaffold_3:15374439-15375203(-) (10)	POPTR_0001s12450 (6)	O96623	Actin-related protein 2/3 complex subunit 2	AT1G30825.1	"Arp2/3 complex, 34 kD subunit p34-Arc "	LOC_Os01g46580.1	"actin-related protein 2/3 complex subunit 2, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
Ptp.7550.1.S1_s_at	A	A1TS	POPTR_0014s07510	POPTR_0014s07510 (11)	scaffold_14:5646453-5647253(-) (11)	NA	P29620	Cyclin-dependent kinase D-1	AT1G73690.1	cyclin-dependent kinase D1;1 	LOC_Os05g32600.1	"cyclin-dependent kinase D-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7551.1.S1_at	A	A1TS	POPTR_0005s10980	POPTR_0005s10980 (11)	scaffold_5:7889249-7890046(+) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G66060.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr5g022950.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7552.1.S1_s_at	A	A1TS	POPTR_0011s07540	POPTR_0011s07540 (11)	scaffold_11:8379053-8379527(+) (11)	NA	NA	NA	AT2G34070.1	TRICHOME BIREFRINGENCE-LIKE 37 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr2g019150.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7553.1.S1_a_at	A	A1TS	POPTR_0005s25100	POPTR_0005s25100 (11)	scaffold_5:23437312-23437791(-) (11)	NA	Q43814	"Ornithine carbamoyltransferase, chloroplastic"	AT1G75330.1	ornithine carbamoyltransferase 	LOC_Os02g47590.1	"ornithine carbamoyltransferase, putative, expressed"	Medtr5g101000.1	Aspartate carbamoyltransferase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016743|carboxyl- or carbamoyltransferase activity	NA
Ptp.7553.1.S1_s_at	A	A1TS	POPTR_0005s25100	POPTR_0005s25100 (11)	scaffold_5:23437156-23437276(-) (11)	NA	Q43814	"Ornithine carbamoyltransferase, chloroplastic"	AT1G75330.1	ornithine carbamoyltransferase 	LOC_Os02g47590.1	"ornithine carbamoyltransferase, putative, expressed"	Medtr5g101000.1	Aspartate carbamoyltransferase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016743|carboxyl- or carbamoyltransferase activity	NA
Ptp.7554.2.S1_s_at	A	A1TS	POPTR_0001s22320	POPTR_0001s22320 (9)	scaffold_1:20940326-20941829(+) (10)	POPTR_0009s02200 (8)	Q9SJF0	Serine/threonine-protein phosphatase BSL2	AT1G08420.1	BRI1 suppressor 1 (BSU1)-like 2 	LOC_Os12g42310.1	"serine/threonine-protein phosphatase BSL2, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.7555.1.S1_s_at	A	A1TS	POPTR_0010s18490	POPTR_0010s18490 (11)	scaffold_10:16720447-16720953(+) (11)	NA	Q84W55	"Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3"	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7556.1.S1_at	A	A1TS	POPTR_0001s47010	POPTR_0001s47010 (11)	scaffold_1:47344375-47346195(-) (11)	NA	Q7ZWM6	Obg-like ATPase 1	AT1G30580.1	GTP binding 	LOC_Os08g09940.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.7557.1.S1_s_at	A	A1TS	POPTR_0006s20030	POPTR_0006s20030 (11)	scaffold_6:19069414-19069829(+) (11)	NA	O65554	CBL-interacting serine/threonine-protein kinase 6	AT4G30960.1	SOS3-interacting protein 3 	LOC_Os01g10890.1	"CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g145620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7558.1.A1_at	A	A1TS	POPTR_0001s05690	POPTR_0001s05690 (10)	scaffold_1:4382737-4382897(+) (10)	NA	P25083	"ADP,ATP carrier protein, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7559.1.S1_s_at	A	A1TS	POPTR_0003s05710	POPTR_0003s05710 (10)	scaffold_3:7098155-7098414(+) (10)	NA	Q03369	U1 small nuclear ribonucleoprotein C	AT4G03120.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os02g16640.1	"proline-rich protein HaeIII subfamily 1 precursor, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
Ptp.7559.2.S1_a_at	A	A1TS	POPTR_0003s05710	POPTR_0003s05710 (11)	scaffold_3:7096592-7097117(+) (11)	NA	Q03369	U1 small nuclear ribonucleoprotein C	AT4G03120.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os02g16640.1	"proline-rich protein HaeIII subfamily 1 precursor, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
Ptp.7560.1.S1_at	A	A1TS	POPTR_0010s14470	POPTR_0010s14470 (10)	scaffold_10:14069078-14069282(-) (10)	NA	NA	NA	AT3G25545.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11970.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7561.1.S1_s_at	A	A1TS	POPTR_0016s06310	POPTR_0016s06310 (11)	scaffold_16:4239918-4240066(+) (11)	NA	Q9ZUT9	40S ribosomal protein S5-1	AT2G37270.2	ribosomal protein 5B 	LOC_Os11g29190.2	"40S ribosomal protein S5, putative, expressed"	AC235488_12.1	Ribosomal protein S7 AC235488.1 52998-48408 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7562.1.A1_at	A	A1TS	POPTR_0018s10570	POPTR_0018s10570 (10)	scaffold_18:11466543-11468080(-) (10)	NA	P34125	Diacylglycerol kinase A	AT2G18730.1	diacylglycerol kinase 3 	LOC_Os02g54650.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.7563.1.S1_at	A	A1TS	POPTR_0006s17720	POPTR_0006s17720 (11)	scaffold_6:15860916-15861499(-) (11)	NA	Q54Q39	Protein phosphatase 1 regulatory subunit pprA	AT5G19680.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g13640.1	"protein phosphatase 1 regulatory subunit SDS22, putative, expressed"	Medtr4g159610.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.7565.1.S1_at	A	A1TS	POPTR_0018s04990	POPTR_0018s04990 (10)	scaffold_18:4421120-4423306(-) (10)	NA	NA	NA	AT4G26210.2	Mitochondrial ATP synthase subunit G protein 	LOC_Os05g45740.2	"mitochondrial ATP synthase g subunit family protein, putative, expressed"	Medtr4g160610.1	Mitochondrial ATP synthase g subunit 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0000276|""mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)"""
Ptp.7566.1.S1_at	A	A1TS	POPTR_0016s08760	POPTR_0016s08760 (11)	scaffold_16:6548165-6548593(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7568.1.S1_s_at	A	A1TS	POPTR_0019s08640	POPTR_0019s08640 (11)	scaffold_19:10175095-10175516(+) (11)	NA	NA	NA	AT5G05240.1	Uncharacterised conserved protein (UCP030365) 	LOC_Os02g03940.1	expressed protein	Medtr1g008510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7569.1.S1_at	A	A1TS	POPTR_0006s19790	POPTR_0006s19790 (10)	scaffold_6:18807990-18809301(-) (10)	NA	NA	NA	AT4G30900.2	DNAse I-like superfamily protein 	LOC_Os05g19974.1	"endonuclease/exonuclease/phosphatase family protein, putative, expressed"	Medtr8g145310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7570.1.S1_at	A	A1TS	POPTR_0010s12190	POPTR_0010s12190 (11)	scaffold_10:12255965-12256852(+) (11)	NA	Q9SXS2	Probable sulfate transporter 3.3	AT1G23090.1	sulfate transporter 91 	LOC_Os04g55800.1	"sulfate transporter, putative, expressed"	AC234703_12.1	Sulphate anion transporter AC234703.1 74838-69482 E EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.7571.1.S1_s_at	A	A1TS	POPTR_0003s14380	POPTR_0003s14380 (11)	scaffold_3:14462278-14462618(+) (11)	NA	NA	NA	AT4G10810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7572.1.S1_s_at	A	A1TS	POPTR_0001s04690	POPTR_0001s04690 (9)	scaffold_1:3631071-3631361(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7574.1.S1_at	A	A1TS	POPTR_0001s45420	POPTR_0001s45420 (9)	scaffold_1:45907790-45909713(-) (11)	NA	Q9MAP8	"Probable beta-1,3-galactosyltransferase 6"	AT1G32930.1	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
Ptp.7575.1.S1_s_at	A	A2TS	POPTR_0007s07960	POPTR_0799s00200 (11)//POPTR_0007s07960 (11)	scaffold_7:6444386-6444674(-) (11)//scaffold_799:351-640(-) (11)	NA	P14656	Glutamine synthetase cytosolic isozyme 1-1	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.7576.1.S1_at	A	A1TS	POPTR_0009s13940	POPTR_0009s13940 (9)	scaffold_9:11007980-11009001(-) (9)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7580.1.S1_at	A	A1TS	POPTR_0004s21060	POPTR_0004s21060 (10)	scaffold_4:20357754-20358252(+) (10)	NA	NA	NA	AT3G11600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g37030.1	expressed protein	AC146630_13.1	hypothetical protein AC146630.25 80011-79050 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7581.1.A1_at	A	A1TS	POPTR_0006s29010	POPTR_0006s29010 (11)	scaffold_6:26509574-26509819(-) (11)	NA	NA	NA	AT4G31430.3	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g56140.3	expressed protein	Medtr3g133430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7582.1.A1_at	A	A1TS	POPTR_0009s15250	POPTR_0009s15250 (9)	scaffold_9:11836615-11836790(-) (9)	NA	Q8LPK4	AP-2 complex subunit alpha-2	AT5G22780.1	"Adaptor protein complex AP-2, alpha subunit "	LOC_Os03g02150.1	"adapitin protein, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.7583.1.S1_at	A	A1TS	POPTR_0004s03770	POPTR_0004s03770 (9)	scaffold_4:2633225-2633742(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr2g014460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7584.1.A1_s_at	A	A1TS	POPTR_0016s01630	POPTR_0016s01630 (11)	scaffold_16:742383-742699(+) (11)	NA	Q9SV07	Acyl-CoA--sterol O-acyltransferase 1	AT3G51970.1	acyl-CoA sterol acyl transferase 1 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr3g076460.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7585.2.S1_s_at	A	A1TS	POPTR_0009s07410	POPTR_0009s07410 (10)	scaffold_9:6920507-6921587(+) (11)	NA	Q54UU1	Trafficking protein particle complex subunit 4	AT5G02280.1	SNARE-like superfamily protein 	LOC_Os07g27150.3	"trafficking protein particle complex subunit 4, putative, expressed"	Medtr4g158650.1	Sybindin-like protein 	GO:0006888|ER to Golgi vesicle-mediated transport	NA	GO:0005801|cis-Golgi network
Ptp.7589.1.A1_a_at	A	A1TS	POPTR_0003s08670	POPTR_0003s08670 (11)	scaffold_3:10069649-10069901(-) (11)	NA	Q42581	"Ribose-phosphate pyrophosphokinase 1, chloroplastic"	AT2G35390.2	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.759.1.S1_at	A	A1TS	POPTR_0017s11740	POPTR_0017s11740 (11)	scaffold_17:11502763-11503291(-) (11)	NA	P33629	Tubulin alpha chain	AT4G14960.2	Tubulin/FtsZ family protein 	LOC_Os11g14220.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.7598.1.S1_at	A	A1TS	POPTR_0005s26110	POPTR_0005s26110 (10)	scaffold_5:24213754-24214093(+) (10)	NA	NA	NA	AT1G19990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). 	LOC_Os03g14580.1	expressed protein	Medtr3g156440.1	"Contains a weak similarity to Rap8, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7599.1.S1_at	A	A1TS	POPTR_0001s16620	POPTR_0001s16620 (11)	scaffold_1:13404544-13405444(+) (11)	NA	NA	NA	AT3G14110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g32730.2	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr8g025640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7599.2.S1_a_at	A	A1TS	POPTR_0001s16620	POPTR_0001s16620 (11)	scaffold_1:13404374-13404528(+) (11)	NA	NA	NA	AT3G14110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g32730.2	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr8g025640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.76.1.S1_s_at	A	A3TS	POPTR_0002s10150	POPTR_0002s10150 (11)//POPTR_0002s10170 (11)//POPTR_1040s00200 (9)	scaffold_1040:1547-2058(+) (9)//scaffold_2:7291850-7292370(-) (11)//scaffold_2:7300870-7301389(-) (11)	NA	Q41001	Blue copper protein	AT1G72230.1	Cupredoxin superfamily protein 	LOC_Os06g11490.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr3g150210.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.760.1.A1_at	A	A1TS	POPTR_0006s00760	POPTR_0006s00760 (11)	scaffold_6:402518-403007(+) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT4G16360.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os05g41220.1	"SNF1-related protein kinase regulatory subunit beta-1, putative, expressed"	Medtr5g095330.1	"SNF1-related protein kinase regulatory subunit beta-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7601.1.S1_s_at	A	A1TS	POPTR_0015s00580	POPTR_0015s00580 (9)	scaffold_15:352361-352527(-) (9)	NA	A7QEU4	Peroxidase 5	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os03g02920.1	"peroxidase precursor, putative, expressed"	Medtr3g122440.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.7602.1.A1_at	A	A1TS	POPTR_0002s09700	POPTR_0002s09700 (11)	scaffold_2:6949841-6950258(-) (11)	NA	Q9C9R3	TRM112-like protein At1g78190	AT1G78190.1	Trm112p-like protein 	LOC_Os07g43020.1	"TRM112, putative, expressed"	Medtr2g034350.1	Protein of unknown function DUF343 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7603.1.S1_at	A	A1TS	POPTR_0001s00580	POPTR_0001s00580 (9)	scaffold_1:471913-472259(-) (9)	NA	O64769	Potassium transporter 11	AT2G35060.1	K+ uptake permease 11 	LOC_Os04g52390.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.7607.1.S1_s_at	A	A1TS	POPTR_0001s13240	POPTR_0001s13240 (10)	scaffold_1:10337976-10339966(-) (10)	NA	Q93ZM9	Protein TIFY 9	AT5G13220.1	jasmonate-zim-domain protein 10 	LOC_Os04g32480.1	"zinc-finger protein, putative, expressed"	Medtr5g013680.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.761.1.A1_at	A	A1TS	POPTR_0007s06840	POPTR_0007s06840 (10)	scaffold_7:5170540-5170955(-) (10)	NA	Q55GD2	Leucine-rich repeat-containing protein DDB_G0268328	AT4G39420.1	unknown protein; Has 46 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g08750.2	expressed protein	Medtr4g141130.1	Cyclic nucleotide-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7620.1.S1_at	A	A1TS	POPTR_0016s06970	POPTR_0016s06970 (9)	scaffold_16:4776598-4777608(+) (9)	NA	NA	NA	AT3G05680.1	embryo defective 2016 	LOC_Os03g35340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7622.1.S1_at	A	A1TS	POPTR_0012s01230	POPTR_0012s01230 (10)	scaffold_12:860363-860851(+) (10)	NA	Q9SUQ3	Probable inactive receptor kinase At4g23740	AT4G23740.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g12390.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g124770.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.7624.1.S1_s_at	A	A1TS	POPTR_0014s13720	POPTR_0014s13720 (11)	scaffold_14:10051169-10051625(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7626.1.S1_at	A	A1TS	POPTR_0005s12090	POPTR_0005s12090 (10)	scaffold_5:8877225-8877841(-) (10)	NA	NA	NA	AT5G49410.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73940.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g27140.1	expressed protein	Medtr5g104930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7627.1.S1_at	A	A1TS	POPTR_0005s22000	POPTR_0005s22000 (10)	scaffold_5:21027516-21027964(-) (10)	NA	NA	NA	AT1G71730.1	unknown protein; Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os05g08920.1	"late embryogenesis abundant protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7628.1.S1_at	A	A1TS	POPTR_0008s12820	POPTR_0008s12820 (10)	scaffold_8:8313920-8314767(-) (10)	NA	NA	NA	AT1G70950.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr3g137120.2	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7629.1.S1_at	A	A1MS	POPTR_0002s17560	POPTR_0002s17560 (11)	scaffold_2:13322323-13323416(-) (11)	NA	P92964	Arginine/serine-rich-splicing factor RSP31	AT3G61860.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g02870.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g029490.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.763.1.S1_s_at	A	A1TS	POPTR_0017s12460	POPTR_0017s12460 (11)	scaffold_17:12628137-12628672(-) (11)	NA	Q39131	Lamin-like protein	AT5G15350.1	early nodulin-like protein 17 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr6g013830.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.7630.1.S1_at	A	A1TS	POPTR_0008s20380	POPTR_0008s20380 (9)	scaffold_8:14165674-14165814(+) (9)	NA	Q9M8J3	Protein FAR1-RELATED SEQUENCE 7	AT3G06250.1	FAR1-related sequence 7 	LOC_Os03g50900.1	"transposon protein, putative, unclassified, expressed"	Medtr2g026200.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.7631.1.S1_at	A	A1TS	POPTR_0004s14500	POPTR_0004s14500 (9)	scaffold_4:15066138-15068897(+) (9)	NA	Q810L3	E3 ubiquitin-protein ligase CHFR	AT1G47570.1	RING/U-box superfamily protein 	LOC_Os11g07450.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g144600.1	"Zinc finger, RING-type; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7633.1.S1_at	A	A1TS	POPTR_0014s05160	POPTR_0014s05160 (10)	scaffold_14:3937786-3938068(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7635.1.S1_at	A	A1TS	POPTR_0014s12180	POPTR_0014s12180 (9)	scaffold_14:9012930-9013392(+) (9)	NA	Q9SRX4	Probable pectinesterase/pectinesterase inhibitor 7	AT1G02810.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g20980.1	"pectinesterase, putative, expressed"	Medtr1g108220.1	Pectinesterase; Plant invertase/pectin methylesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.7637.1.A1_at	A	A1TS	POPTR_0008s19930	POPTR_0008s19930 (11)	scaffold_8:13768813-13769969(-) (11)	NA	NA	NA	AT1G07040.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). 	LOC_Os10g32680.1	expressed protein	Medtr5g039510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7638.1.S1_s_at	A	A1TS	POPTR_0014s17070	POPTR_0014s17070 (11)	scaffold_14:13248548-13248934(-) (11)	NA	P27522	"Chlorophyll a-b binding protein 8, chloroplastic"	AT1G61520.3	photosystem I light harvesting complex gene 3 	LOC_Os02g10390.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g106420.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.7639.1.S1_at	A	A1TS	POPTR_0010s06390	POPTR_0010s06390 (9)	scaffold_10:7749224-7749710(+) (9)//scaffold_10:7781678-7782164(+) (9)	POPTR_0010s06380 (6)	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g43040.2	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.7643.1.S1_at	A	A1MS	POPTR_0005s21660	POPTR_0005s21660 (9)	scaffold_5:20765538-20766035(+) (9)	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.2	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7644.1.S1_at	A	A1TS	POPTR_0001s29560	POPTR_0001s29560 (11)	scaffold_1:28200596-28200742(+) (11)	NA	P33154	Pathogenesis-related protein 1	AT2G14610.1	pathogenesis-related gene 1 	LOC_Os10g11500.1	"SCP-like extracellular protein, expressed"	Medtr2g010660.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7644.1.S1_s_at	A	A1TS	POPTR_0001s29560	POPTR_0001s29560 (11)	scaffold_1:28200301-28200759(+) (11)	NA	P33154	Pathogenesis-related protein 1	AT2G14610.1	pathogenesis-related gene 1 	LOC_Os10g11500.1	"SCP-like extracellular protein, expressed"	Medtr2g010660.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7646.1.A1_a_at	A	A1TS	POPTR_0001s06470	POPTR_0001s06470 (11)	scaffold_1:4995519-4996248(+) (11)	NA	Q6LL68	Beta-galactosidase	AT3G54440.1	glycoside hydrolase family 2 protein 	LOC_Os01g72340.1	"beta-galactosidase, putative, expressed"	Medtr8g042760.1	"Glycoside hydrolase, family 42, domain 5, loop region; Glycoside hydrolase family 2, sugar binding; Galactose mutarotase-like; ; "	GO:0005975|carbohydrate metabolic process	GO:0004565|beta-galactosidase activity	GO:0009341|beta-galactosidase complex
Ptp.7648.1.S1_s_at	A	A1TS	POPTR_0013s11590	POPTR_0013s11590 (11)	scaffold_13:12240263-12240840(-) (11)	NA	Q9H6Y7	E3 ubiquitin-protein ligase RNF167	AT1G71980.1	Protease-associated (PA) RING/U-box zinc finger family protein 	LOC_Os03g07130.4	"RING finger protein 13, putative, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7652.1.S1_s_at	A	A1TS	POPTR_0006s11250	POPTR_0006s11250 (11)	scaffold_6:8544196-8544836(+) (11)	NA	Q96EX2	RING finger and transmembrane domain-containing protein 2	AT5G01960.1	RING/U-box superfamily protein 	LOC_Os01g07390.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr7g080680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7653.1.S1_a_at	A	A2TS	POPTR_0009s04410	POPTR_0187s00240 (11)//POPTR_0009s04410 (11)	scaffold_187:79324-79358(+) (11)//scaffold_9:4793883-4793917(-) (11)	NA	P05478	18.5 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7653.1.S1_s_at	A	A2TS	POPTR_0009s04410	POPTR_0187s00240 (11)//POPTR_0009s04410 (11)	scaffold_187:78917-78960(+) (11)//scaffold_9:4794281-4794324(-) (11)	NA	P05478	18.5 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7654.1.S1_at	A	A1TS	POPTR_0005s18320	POPTR_0005s18320 (11)	scaffold_5:16473223-16474383(+) (11)	NA	Q9FH99	F-box protein At5g67140	AT5G67140.1	F-box/RNI-like superfamily protein 	LOC_Os06g07000.1	"OsFBL28 - F-box domain and LRR containing protein, expressed"	Medtr5g016800.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7657.1.S1_at	A	A1TS	POPTR_0015s04710	POPTR_0015s04710 (9)	scaffold_15:4922090-4928997(+) (9)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g21940.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7658.1.S1_s_at	A	A1TS	POPTR_0009s15190	POPTR_0009s15190 (11)	scaffold_9:11778973-11779444(-) (11)	NA	Q9FNI7	Glucomannan 4-beta-mannosyltransferase 2	AT5G22740.1	cellulose synthase-like A02 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr4g073490.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7659.1.S1_s_at	A	A1TS	POPTR_0011s12230	POPTR_0011s12230 (11)	scaffold_11:14989143-14991795(+) (11)	NA	Q5ZLN0	Leucine-rich repeat-containing protein 40	AT3G15410.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g58030.1	"leucine-rich repeat-containing protein 40, putative, expressed"	Medtr7g117050.1	Protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.766.1.S1_s_at	A	A1TS	POPTR_0018s01710	POPTR_0018s01710 (11)	scaffold_18:1568684-1569066(+) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.7661.1.S1_at	A	A1TS	POPTR_0009s01900	POPTR_0009s01900 (10)	scaffold_9:2372518-2373607(+) (10)	NA	Q6MD85	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	AT5G60600.3	4-hydroxy-3-methylbut-2-enyl diphosphate synthase 	LOC_Os02g39160.1	"hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed"	Medtr2g110470.1	IspG protein; Dihydropteroate synthase-like 	GO:0055114|oxidation reduction||GO:0016114|terpenoid biosynthetic process	GO:0046429|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	NA
Ptp.7663.1.S1_at	A	A1TS	POPTR_0012s04460	POPTR_0012s04460 (10)	scaffold_12:3675344-3675851(+) (10)	NA	Q8L7A4	Probable ADP-ribosylation factor GTPase-activating protein AGD11	AT3G17980.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g22130.1	expressed protein	Medtr4g154840.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7664.1.S1_at	A	A1MS	POPTR_0017s11280	POPTR_0017s11280 (9)	scaffold_17:11020075-11020289(+) (9)	NA	A7Z050	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1	AT5G15070.1	Phosphoglycerate mutase-like family protein 	LOC_Os03g48300.1	"histidine acid phosphatase, putative, expressed"	Medtr7g008460.1	Histidine acid phosphatase; Ferritin/ribonucleotide reductase-like 	NA	GO:0003993|acid phosphatase activity	NA
Ptp.7668.1.S1_at	A	A1TS	POPTR_0016s09190	POPTR_0016s09190 (11)	scaffold_16:7179691-7179948(-) (11)	NA	Q9ZUU4	"Ribonucleoprotein At2g37220, chloroplastic"	AT2G37220.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g43810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g076830.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7672.1.S1_at	A	A1TS	POPTR_0004s16590	POPTR_0004s16590 (9)	scaffold_4:17018467-17019115(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr3g162790.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
Ptp.7673.1.S1_at	A	A1TS	POPTR_0012s05600	POPTR_0012s05600 (11)	scaffold_12:5263682-5264178(+) (11)	NA	P29110	Oleosin Bn-III	AT3G18570.1	Oleosin family protein 	LOC_Os05g50110.1	"oleosin, putative, expressed"	Medtr3g133000.1	Oleosin 	NA	NA	GO:0043231|intracellular membrane-bounded organelle||GO:0016021|integral to membrane||GO:0012511|monolayer-surrounded lipid storage body
Ptp.7674.1.S1_at	A	A1TS	POPTR_0015s04120	POPTR_0015s04120 (9)	scaffold_15:4142881-4145190(+) (9)	NA	Q9LMT1	Probable protein phosphatase 2C 8	AT1G18030.1	Protein phosphatase 2C family protein 	LOC_Os09g14540.1	"protein phosphatase 2C, putative, expressed"	Medtr6g086250.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7677.1.S1_at	A	A1TS	POPTR_0006s28280	POPTR_0006s28280 (10)	scaffold_6:26018482-26019220(+) (10)	NA	Q3E6P4	F-box protein At2g02240	AT2G02240.1	F-box family protein 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr1g092880.1	"Cyclin-like F-box; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7679.1.S1_a_at	A	A1TS	POPTR_0007s07690	POPTR_0007s07690 (11)	scaffold_7:6063544-6063698(-) (11)	NA	Q9LEY1	Serine carboxypeptidase-like 35	AT5G08260.1	serine carboxypeptidase-like 35 	LOC_Os02g42310.1	"OsSCP8 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g100960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.7679.2.S1_s_at	A	A1TS	POPTR_0007s07690	POPTR_0007s07690 (11)	scaffold_7:6061623-6063220(-) (11)	NA	Q9LEY1	Serine carboxypeptidase-like 35	AT5G08260.1	serine carboxypeptidase-like 35 	LOC_Os02g42310.1	"OsSCP8 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g100960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.768.1.S1_s_at	A	A1TS	POPTR_0003s05230	POPTR_0003s05230 (11)	scaffold_3:6479595-6479733(+) (11)	NA	O24461	Ras-related protein Rab7	AT1G52280.1	RAB GTPase homolog G3D 	LOC_Os01g12730.1	"ras-related protein, putative, expressed"	Medtr4g009230.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.7681.1.A1_a_at	A	A1TS	POPTR_0014s15560	POPTR_0014s15560 (11)	scaffold_14:11586047-11586312(-) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G15410.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7682.1.A1_at	A	A1TS	POPTR_0003s15430	POPTR_0003s15430 (11)	scaffold_3:15205161-15205390(-) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g58630.1	"pentatricopeptide repeat, putative, expressed"	Medtr7g134520.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7687.1.S1_at	A	A1MS	POPTR_0006s19010	POPTR_0006s19010 (10)	scaffold_6:17849465-17849574(-) (10)	NA	NA	NA	AT4G28025.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g39730.2	expressed protein	Medtr8g127870.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7688.1.S1_s_at	A	A1TS	POPTR_0019s04710	POPTR_0019s04710 (11)	scaffold_19:4924440-4924734(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G18270.2	Arabidopsis NAC domain containing protein 87 	LOC_Os03g21030.1	"no apical meristem protein, putative, expressed"	Medtr7g100140.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.7689.1.S1_s_at	A	A1TS	POPTR_0014s03650	POPTR_0014s03650 (11)	scaffold_14:2914098-2914176(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT5G42630.1	Homeodomain-like superfamily protein 	LOC_Os03g55760.1	"MYB family transcription factor, putative, expressed"	Medtr1g025490.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7690.1.S1_at	A	A1MA	POPTR_0016s13090	POPTR_0016s13090 (9)	scaffold_16:12386185-12386525(-) (9)	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7691.1.A1_s_at	A	A1TS	POPTR_0012s13180	POPTR_0012s13180 (11)	scaffold_12:13447460-13447787(-) (11)	NA	Q04980	Low-temperature-induced 65 kDa protein	AT5G52300.2	CAP160 protein 	LOC_Os10g36180.1	expressed protein	AC235674_13.1	hypothetical protein AC235674.1 71786-63477 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7692.1.A1_at	A	A1TS	POPTR_0001s02040	POPTR_0001s02040 (11)	scaffold_1:1539012-1539518(+) (11)	NA	Q94KU5	"Plastid lipid-associated protein 3, chloroplastic"	AT2G35490.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os10g42500.1	"PAP fibrillin family domain containing protein, expressed"	Medtr5g029500.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
Ptp.7694.1.S1_s_at	A	A1TS	POPTR_0003s06390	POPTR_0003s06390 (9)	scaffold_3:7873358-7873550(-) (9)	NA	NA	NA	AT1G54150.1	E3 Ubiquitin ligase family protein 	LOC_Os03g08000.1	expressed protein	Medtr8g025010.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7695.1.S1_s_at	A	A1TS	POPTR_0009s11510	POPTR_0009s11510 (11)	scaffold_580:1537-2147(-) (11)//scaffold_9:9548161-9548771(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os01g06520.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr5g093760.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.7696.2.S1_at	A	A1TS	POPTR_1677s00200	POPTR_1677s00200 (11)	scaffold_1677:1751-1941(+) (11)	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os06g50950.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g026270.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.7697.1.S1_at	A	A1TS	POPTR_0010s10650	POPTR_0010s10650 (10)	scaffold_10:11119091-11119607(+) (10)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT1G60060.1	Serine/threonine-protein kinase WNK (With No Lysine)-related 	LOC_Os02g50900.1	expressed protein	Medtr5g036020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7698.1.S1_at	A	A1TS	POPTR_0009s06070	POPTR_0009s06070 (11)	scaffold_9:5978363-5978880(-) (11)	NA	NA	NA	AT1G01550.2	Protein of unknown function (DUF793) 	NA	NA	Medtr3g030380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.77.1.S1_at	A	A1TS	POPTR_0002s19340	POPTR_0002s19340 (11)	scaffold_2:15296385-15296861(-) (11)	NA	O22899	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G62310.1	RNA helicase family protein 	LOC_Os03g19960.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr1g106350.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.770.1.A1_s_at	A	A1TS	POPTR_0010s23620	POPTR_0010s23620 (11)	scaffold_10:20157879-20158561(-) (11)	NA	P36862	GTP-binding protein yptV3	AT5G03530.1	RAB GTPase homolog C2A 	LOC_Os03g05280.1	"ras-related protein, putative, expressed"	Medtr3g143270.1	"Ras GTPase; Sigma-54 factor, interaction region; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.7700.1.S1_at	A	A1TS	POPTR_0008s20990	POPTR_0008s20990 (11)	scaffold_8:15030118-15031178(-) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G18650.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os12g35320.1	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr2g025150.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.7705.1.S1_at	A	A1TS	POPTR_0016s08190	POPTR_0016s08190 (9)	scaffold_16:6035908-6036484(-) (9)	NA	Q92539	Phosphatidate phosphatase LPIN2	AT3G09560.3	Lipin family protein 	LOC_Os05g38710.1	"lipin, N-terminal conserved region family protein, expressed"	Medtr7g120540.1	"Lipin, N-terminal conserved region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7706.1.S1_at	A	A1TS	POPTR_0014s02800	POPTR_0014s02800 (9)	scaffold_14:2330805-2331161(+) (9)	NA	Q6NY52	THO complex subunit 5 homolog	AT5G42920.2	"THO complex,  subunit 5 "	LOC_Os02g52820.1	"cold-induced protein, putative, expressed"	Medtr3g147710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7706.2.A1_at	A	A1TS	POPTR_0014s02800	POPTR_0014s02800 (10)	scaffold_14:2329881-2330706(+) (10)	NA	Q6NY52	THO complex subunit 5 homolog	AT5G42920.2	"THO complex,  subunit 5 "	LOC_Os02g52820.1	"cold-induced protein, putative, expressed"	Medtr3g147710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7707.1.S1_s_at	A	A1TS	POPTR_0004s00470	POPTR_0004s00470 (11)	scaffold_4:165913-166033(-) (11)	NA	NA	NA	AT4G03965.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g147420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7710.1.S1_s_at	A	A1TS	POPTR_0005s11640	POPTR_0005s11640 (11)	scaffold_5:8434782-8434868(-) (11)	NA	Q9Y4A5	Transformation/transcription domain-associated protein	AT2G17930.1	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain 	LOC_Os07g45070.1	"FAT domain-containing protein, putative, expressed"	Medtr5g021910.1	"PIK-related kinase, FATC "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
Ptp.7711.2.A1_a_at	A	A1TS	POPTR_0009s04920	POPTR_0009s04920 (10)	scaffold_9:5158978-5159252(+) (10)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT2G29730.1	UDP-glucosyl transferase 71D1 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7712.2.A1_a_at	A	A1TS	POPTR_0008s16570	POPTR_0008s16570 (11)	scaffold_8:11120540-11123303(-) (11)	NA	Q9LSW8	"Electron transfer flavoprotein subunit beta, mitochondrial"	AT5G43430.1	electron transfer flavoprotein beta 	LOC_Os04g10400.1	"electron transfer flavoprotein subunit beta, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7713.1.A1_at	A	A1TS	POPTR_0001s10050	POPTR_0001s10050 (9)	scaffold_1:7773536-7774328(-) (9)	NA	Q9P7J5	Uncharacterized AAA domain-containing protein C24B10.10c	AT1G64110.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g12660.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g009960.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.7715.1.S1_a_at	A	A1TS	POPTR_0012s00640	POPTR_0012s00640 (10)	scaffold_12:318665-318859(+) (10)//scaffold_276:21939-22146(-) (11)	NA	Q9XGN1	Protein TRANSPARENT TESTA GLABRA 1	AT5G24520.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g45810.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g122570.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7718.1.S1_at	A	A1TS	POPTR_0005s04670	POPTR_0005s04670 (10)	scaffold_5:3143694-3143812(+) (10)	NA	P56287	Probable translation initiation factor eIF-2B subunit epsilon	AT2G34970.1	Trimeric LpxA-like enzyme 	LOC_Os02g56740.1	"translation initiation factor eIF-2B subunit epsilon, putative, expressed"	Medtr6g025610.1	eIF4-gamma/eIF5/eIF2-epsilon 	NA	GO:0016740|transferase activity	NA
Ptp.7718.1.S1_s_at	A	A1TS	POPTR_0005s04670	POPTR_0005s04670 (10)	scaffold_5:3141903-3143702(+) (10)	NA	P56287	Probable translation initiation factor eIF-2B subunit epsilon	AT2G34970.1	Trimeric LpxA-like enzyme 	LOC_Os02g56740.1	"translation initiation factor eIF-2B subunit epsilon, putative, expressed"	Medtr6g025610.1	eIF4-gamma/eIF5/eIF2-epsilon 	NA	GO:0016740|transferase activity	NA
Ptp.7719.1.A1_at	A	A1TS	POPTR_0007s00400	POPTR_0007s00400 (9)	scaffold_7:143205-143571(+) (9)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT2G31820.1	Ankyrin repeat family protein 	LOC_Os09g34280.4	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.772.1.A1_s_at	A	A1TS	POPTR_0007s13600	POPTR_0007s13600 (11)	scaffold_7:13630713-13631066(+) (11)	NA	NA	NA	AT3G51050.1	FG-GAP repeat-containing protein 	LOC_Os02g01070.1	"FG-GAP repeat-containing protein, putative, expressed"	Medtr5g021050.1	FG-GAP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7732.1.S1_at	A	A1TS	POPTR_0001s33550	POPTR_0001s33550 (11)	scaffold_1:31758806-31759208(+) (11)	NA	Q9LBG2	Levodione reductase	AT3G01980.4	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g63290.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g008910.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7733.1.S1_s_at	A	A1TS	POPTR_0019s09910	POPTR_0019s09910 (11)	scaffold_19:11534343-11534562(+) (11)	NA	Q9S7A3	Molybdopterin synthase sulfur carrier subunit	AT4G10100.3	"co-factor for nitrate, reductase and xanthine dehydrogenase 7 "	LOC_Os02g35200.1	"VP15, putative, expressed"	Medtr3g009960.1	ThiamineS; 2Fe-2S Ferredoxin-like fold 	GO:0006790|sulfur metabolic process	NA	NA
Ptp.7734.1.S1_s_at	A	A1TS	POPTR_0009s05400	POPTR_0009s05400 (11)	scaffold_9:5516670-5516870(+) (11)	NA	O24133	"Magnesium-chelatase subunit chlD, chloroplastic"	AT1G08520.1	ALBINA 1 	LOC_Os03g59640.1	"magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed"	Medtr5g009080.1	"von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7735.1.S1_at	A	A1TS	POPTR_0008s04260	POPTR_0008s04260 (9)	scaffold_8:2386116-2386312(+) (9)	NA	Q9FT54	Transcription factor GTE6	AT2G34900.1	Transcription factor GTE6 	LOC_Os06g04640.1	"bromodomain domain containing protein, expressed"	Medtr8g084150.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7736.1.S1_at	A	A1TS	POPTR_0006s08180	POPTR_0006s08180 (11)	scaffold_6:5955629-5955741(-) (11)//scaffold_871:8972-9084(+) (11)	NA	NA	NA	AT5G24710.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g46510.1	"peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed"	Medtr7g134460.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7737.1.S1_s_at	A	A1TS	POPTR_0004s01330	POPTR_0004s01330 (11)	scaffold_4:722417-722528(-) (11)	NA	Q9LFF1	"Pentatricopeptide repeat-containing protein At3g53700, chloroplastic"	AT3G53700.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g40020.1	"PPR repeat containing protein, expressed"	AC233662_58.1	Pentatricopeptide repeat AC233662.1 266570-264088 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7738.1.S1_at	A	A1TS	POPTR_0011s16010	POPTR_0011s16010 (10)	scaffold_11:17987406-17987610(+) (10)	NA	NA	NA	AT1G07090.1	Protein of unknown function (DUF640) 	LOC_Os02g56610.1	"DUF640 domain containing protein, putative, expressed"	Medtr5g080780.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7739.1.S1_at	A	A1TS	POPTR_0001s40730	POPTR_0001s40730 (9)	scaffold_1:40309283-40310294(-) (9)	NA	Q8LFP1	PRA1 family protein H	AT4G27540.1	prenylated RAB acceptor 1.H 	LOC_Os09g04880.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.774.1.A1_at	A	A1TS	POPTR_0005s12320	POPTR_0005s12320 (10)	scaffold_5:9097341-9097762(+) (10)	NA	Q9ZPV8	Phosphopantetheine adenylyltransferase	AT2G18250.1	4-phosphopantetheine adenylyltransferase 	LOC_Os02g04120.1	"cytidylyltransferase domain containing protein, expressed"	Medtr5g020570.1	Dephospho-CoA kinase; Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.7740.1.S1_at	A	A1TS	POPTR_0010s18100	POPTR_0010s18100 (10)	scaffold_10:16460050-16460500(+) (10)	NA	B4RRY8	Ribosomal RNA large subunit methyltransferase I	AT1G54310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g07740.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.7740.2.A1_a_at	A	A1TS	POPTR_0010s18100	POPTR_0010s18100 (11)	scaffold_10:16459949-16460940(+) (11)	NA	B4RRY8	Ribosomal RNA large subunit methyltransferase I	AT1G54310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g07740.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.7740.2.A1_at	A	A1TS	POPTR_0010s18100	POPTR_0010s18100 (10)	scaffold_10:16459578-16461091(+) (10)	NA	B4RRY8	Ribosomal RNA large subunit methyltransferase I	AT1G54310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g07740.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.7745.1.S1_s_at	A	A1MS	POPTR_0014s12970	POPTR_0014s12970 (11)	scaffold_14:9551027-9551309(-) (11)	NA	O82261	"Protease Do-like 2, chloroplastic"	AT2G47940.1	DEGP protease 2 	LOC_Os05g05480.1	"OsDegp6 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.7746.1.S1_at	A	A1TS	POPTR_0002s19190	POPTR_0002s19190 (11)	scaffold_2:15118238-15119976(-) (11)	NA	NA	NA	AT4G01897.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); Has 763 Blast hits to 763 proteins in 180 species: Archae - 0; Bacteria - 351; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). 	LOC_Os03g36630.1	expressed protein	Medtr7g133460.1	Protein of unknown function DUF952 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7748.1.S1_at	A	A1TS	POPTR_0016s07800	POPTR_0016s07800 (9)	scaffold_16:5616879-5617168(+) (9)	NA	NA	NA	AT3G52570.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g64262.2	"hydrolase, alpha/beta fold family, putative, expressed"	Medtr5g008770.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7749.1.S1_at	A	A1TS	POPTR_0006s09820	POPTR_0006s09820 (11)	scaffold_6:7208733-7209227(-) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.775.1.S1_x_at	A	A1TS	POPTR_0009s13890	POPTR_0009s13890 (11)	scaffold_9:10978473-10979160(-) (11)	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.7754.1.S1_a_at	A	A1TS	POPTR_0009s11910	POPTR_0009s11910 (9)	scaffold_9:9798516-9798556(-) (9)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
Ptp.7754.1.S1_at	A	A1TS	POPTR_0009s11910	POPTR_0009s11910 (9)	scaffold_9:9798496-9798944(-) (9)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
Ptp.7758.1.S1_at	A	A1TS	POPTR_0005s21380	POPTR_0005s21380 (11)	scaffold_5:20483076-20483561(-) (11)	NA	P62311	U6 snRNA-associated Sm-like protein LSm3	AT1G76860.1	Small nuclear ribonucleoprotein family protein 	LOC_Os01g64690.1	"LSM domain containing protein, expressed"	Medtr4g115290.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7759.1.S1_at	A	A1TS	POPTR_0016s01530	POPTR_0016s01530 (11)	scaffold_16:697654-698758(+) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os02g48730.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr2g029800.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
Ptp.7764.1.S1_s_at	A	A1TS	POPTR_0010s16600	POPTR_0010s16600 (11)	scaffold_10:15513030-15513261(-) (11)	NA	NA	NA	AT1G10380.1	Putative membrane lipoprotein 	LOC_Os06g25950.1	expressed protein	Medtr5g038340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7766.1.S1_at	A	A1TS	POPTR_0006s16340	POPTR_0006s16340 (11)	scaffold_6:14261885-14262271(-) (11)	NA	Q95QD7	Protein lin-54	AT4G29000.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os01g55580.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	AC225507_24.1	"Tesmin/TSO1-like, CXC AC225507.11 107125-103243 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7769.1.S1_at	A	A1MS	POPTR_0003s12670	POPTR_0003s12670 (9)	scaffold_3:13182788-13183203(+) (9)	NA	P41230	Lysine-specific demethylase 5C	AT1G63490.1	transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	Medtr5g010400.1	"transcription factor jumonji, related "	NA	NA	GO:0005634|nucleus
Ptp.777.1.A1_at	A	A1TS	POPTR_0017s08060	POPTR_0017s08060 (11)	scaffold_17:6465535-6465962(+) (11)	NA	O04866	"Acetylornithine aminotransferase, mitochondrial"	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.7770.1.S1_a_at	A	A1TS	POPTR_0004s23770	POPTR_0004s23770 (11)	scaffold_4:22376415-22376605(-) (11)	NA	Q8L7G0	Auxin response factor 1	AT1G59750.4	auxin response factor 1 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr2g005100.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7770.2.S1_at	A	A1TS	POPTR_0004s23770	POPTR_0004s23770 (11)	scaffold_4:22375820-22376922(-) (11)	NA	Q8L7G0	Auxin response factor 1	AT1G59750.4	auxin response factor 1 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr2g005100.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7771.1.S1_at	A	A1TS	POPTR_0010s17470	POPTR_0010s17470 (11)	scaffold_10:16062917-16063655(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G69560.1	myb domain protein 105 	LOC_Os08g33800.1	"MYB family transcription factor, putative"	Medtr4g111830.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7773.1.S1_s_at	A	A1TS	POPTR_0001s15210	POPTR_0001s15210 (10)	scaffold_1:12054619-12054740(-) (10)	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	LOC_Os10g40140.1	"MSP domain containing protein, expressed"	Medtr5g013430.1	Major sperm protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7774.1.A1_at	A	A1TS	POPTR_0006s12040	POPTR_0006s12040 (9)	scaffold_6:9207743-9208268(-) (9)	POPTR_0016s10950 (7)	Q9DE27	RuvB-like 2	AT5G67630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g08770.1	"ruvB-like 2, putative, expressed"	Medtr3g080810.1	"AAA ATPase; TIP49, C-terminal "	NA	GO:0003678|DNA helicase activity||GO:0005524|ATP binding	NA
Ptp.7775.1.A1_at	A	A1TS	POPTR_0015s14370	POPTR_0015s14370 (9)	scaffold_15:13999646-13999780(-) (9)	NA	Q9LUJ5	Probable rRNA-processing protein EBP2 homolog	AT3G22660.1	rRNA processing protein-related 	LOC_Os07g29320.1	"rRNA-processing protein EBP2, putative, expressed"	Medtr5g028430.1	Eukaryotic rRNA processing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7776.1.S1_at	A	A1TS	POPTR_0018s12080	POPTR_0018s12080 (9)	scaffold_18:12667394-12668206(-) (9)	NA	P55862	DNA replication licensing factor mcm5-A	AT2G07690.1	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os02g55410.1	"MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed"	Medtr4g165910.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
Ptp.7782.1.A1_s_at	A	A1TS	POPTR_0010s10570	POPTR_0010s10570 (11)	scaffold_10:11073955-11074388(+) (11)	NA	NA	NA	AT1G70230.1	TRICHOME BIREFRINGENCE-LIKE 27 	LOC_Os06g12870.1	"leaf senescence related protein, putative, expressed"	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7784.1.S1_at	A	A1TS	POPTR_0008s10520	POPTR_0008s10520 (10)	scaffold_8:6593603-6595778(-) (10)	NA	P0AAT8	Uncharacterized protein ybeB	AT1G67620.1	Lojap-related protein 	LOC_Os12g13824.2	expressed protein	Medtr3g103350.1	Iojap-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7785.1.A1_s_at	A	A1TS	POPTR_0005s25360	POPTR_0005s25360 (11)	scaffold_5:23633824-23635366(+) (11)	NA	Q9FMM0	Probable ubiquitin-conjugating enzyme E2 18	AT5G42990.1	ubiquitin-conjugating enzyme 18 	LOC_Os03g47770.1	"ubiquitin-conjugating enzyme E2 W, putative, expressed"	Medtr5g021210.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.7787.1.S1_s_at	A	A1TS	POPTR_0013s13210	POPTR_0013s13210 (11)	scaffold_13:13772098-13773334(+) (11)	NA	Q7Z9H9	Uncharacterized protein C1093.03	AT3G59770.1	sacI homology domain-containing protein / WW domain-containing protein 	LOC_Os01g25330.3	"SAC9, putative, expressed"	Medtr4g128320.1	"WW/Rsp5/WWP; Synaptojanin, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.7790.1.S1_at	A	A1TS	POPTR_0002s25890	POPTR_0002s25890 (11)	scaffold_2:22898751-22899021(-) (11)	NA	Q4KLU2	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7795.1.S1_at	A	A1MS	POPTR_0008s12840	POPTR_0008s12840 (11)	scaffold_8:8343819-8344125(-) (11)	NA	Q0JKX1	Homeobox-leucine zipper protein HOX3	AT2G01430.1	homeobox-leucine zipper protein 17 	LOC_Os01g45570.1	"homeobox associated leucine zipper, putative, expressed"	Medtr2g071640.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.78.2.A1_a_at	A	A2TS	POPTR_0004s13480	POPTR_0004s13480 (11)//POPTR_0017s11290 (11)	scaffold_17:11044124-11044489(-) (11)//scaffold_4:13635276-13635641(+) (11)	NA	Q32RS0	Pyruvate dehydrogenase E1 component subunit beta	AT2G34590.1	Transketolase family protein 	LOC_Os12g42230.1	"transketolase, putative, expressed"	Medtr3g115120.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.78.2.A1_at	A	A1TS	POPTR_0004s13480	POPTR_0004s13480 (11)	scaffold_4:13635341-13635795(+) (11)	NA	Q32RS0	Pyruvate dehydrogenase E1 component subunit beta	AT2G34590.1	Transketolase family protein 	LOC_Os12g42230.1	"transketolase, putative, expressed"	Medtr3g115120.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.78.3.A1_a_at	A	A1TS	POPTR_0017s11290	POPTR_0017s11290 (11)	scaffold_17:11043901-11044359(-) (11)	NA	Q32RS0	Pyruvate dehydrogenase E1 component subunit beta	AT2G34590.1	Transketolase family protein 	LOC_Os12g42230.1	"transketolase, putative, expressed"	Medtr3g115120.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.7803.1.S1_at	A	A1MA	POPTR_0001s33920	POPTR_0001s33920 (9)	scaffold_1:32084222-32084641(-) (9)	NA	P92942	Chloride channel protein CLC-b	AT3G27170.1	chloride channel B 	LOC_Os12g25200.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr6g025600.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
Ptp.7804.1.S1_at	A	A1TS	POPTR_0005s21300	POPTR_0005s21300 (10)	scaffold_5:20407173-20407219(-) (10)	NA	Q04088	Probable transcription factor PosF21	AT1G43700.1	VIRE2-interacting protein 1 	LOC_Os12g06520.1	"bZIP transcription factor domain containing protein, expressed"	Medtr5g083200.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.7805.1.A1_at	A	A1TS	POPTR_0004s12760	POPTR_0004s12760 (11)	scaffold_4:12002216-12002734(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os03g52310.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
Ptp.7806.1.S1_at	A	A1MS	POPTR_0005s06190	POPTR_0005s06190 (11)	scaffold_5:4067028-4067125(+) (11)	NA	Q9LIQ7	"Pentatricopeptide repeat-containing protein At3g24000, mitochondrial"	AT3G24000.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os11g10740.1	"tetratricopeptide-like helical, putative"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7809.1.S1_at	A	A1MS	POPTR_0001s39220	POPTR_0001s39220 (9)	scaffold_1:38430982-38431168(-) (9)	NA	Q9SYM4	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1"	AT1G78580.1	trehalose-6-phosphate synthase 	LOC_Os05g44210.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g136450.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.7811.1.A1_at	A	A1TS	POPTR_0005s09800	POPTR_0005s09800 (11)	scaffold_5:6860941-6861854(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G79570.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os07g25680.1	"protein kinase domain containing protein, expressed"	Medtr1g111680.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7815.1.A1_at	A	A1TS	POPTR_0019s02260	POPTR_0019s02260 (11)	scaffold_19:2101551-2102015(-) (11)	NA	Q8T4E1	Putative GPI-anchor transamidase	AT1G08750.3	Peptidase C13 family 	LOC_Os02g12740.1	"GPI-anchor transamidase precursor, putative, expressed"	Medtr2g073970.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
Ptp.7816.1.S1_at	A	A2TA	POPTR_0010s22080	POPTR_0010s22080 (10)//POPTR_0010s22090 (10)	scaffold_10:19142994-19143095(+) (10)//scaffold_10:19149148-19149249(+) (10)	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.7817.1.A1_at	A	A1TS	POPTR_0003s14940	POPTR_0003s14940 (11)	scaffold_3:14858632-14858838(+) (11)	NA	Q4PC17	Multiple RNA-binding domain-containing protein 1	AT4G19610.1	nucleotide binding;nucleic acid binding;RNA binding 	LOC_Os04g52200.1	"RNA recognition motif containing protein, putative, expressed"	Medtr2g021990.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.7818.2.S1_a_at	A	A1TS	POPTR_0013s00370	POPTR_0013s00370 (11)	scaffold_13:149344-150766(+) (11)	POPTR_0005s00450 (7)	A2A6A1	G patch domain-containing protein 8	AT5G26610.3	D111/G-patch domain-containing protein 	LOC_Os04g02500.2	"G-patch domain containing protein, expressed"	Medtr7g134900.2	"D111/G-patch; Zinc finger, C2H2-type "	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.782.1.S1_at	A	A1TS	POPTR_0008s00710	POPTR_0008s00710 (9)	scaffold_8:327706-327908(+) (9)	NA	Q5QQ57	Xylosyltransferase 1	AT1G71070.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g56570.1	"xylosyltransferase, putative, expressed"	Medtr1g137280.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.782.1.S1_s_at	A	A1TS	POPTR_0001s42950	POPTR_0001s42950 (11)	scaffold_1:43031314-43031625(-) (11)	NA	C0LGH2	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	AT1G16670.1	Protein kinase superfamily protein 	LOC_Os02g06930.2	"protein kinase, putative, expressed"	Medtr2g077070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7823.1.A1_at	A	A1TS	POPTR_0017s07580	POPTR_0017s07580 (11)	scaffold_17:5898305-5898788(-) (11)	NA	Q94B59	"Pentatricopeptide repeat-containing protein At5g09450, mitochondrial"	AT5G09450.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g37720.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7827.1.S1_at	A	A1MS	POPTR_0010s19760	POPTR_0010s19760 (9)	scaffold_10:17592930-17593453(+) (9)	NA	NA	NA	AT2G40070.1	BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g04880.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g093370.1	"En/Spm-like transposon protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7828.1.S1_at	A	A1MS	POPTR_0001s37250	POPTR_0001s37250 (9)	scaffold_1:36190253-36190686(-) (9)	NA	P0C896	"Pentatricopeptide repeat-containing protein At3g02650, mitochondrial"	AT3G02650.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g67210.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g095990.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7831.1.S1_at	A	A1MS	POPTR_0008s04140	POPTR_0008s04140 (11)	scaffold_8:2302055-2302532(-) (11)	NA	Q9SFB5	Serine carboxypeptidase-like 27	AT3G07990.1	serine carboxypeptidase-like 27 	LOC_Os01g61690.1	"OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.7832.1.S1_at	A	A1MS	POPTR_0019s15040	POPTR_0019s15040 (9)	scaffold_19:15665254-15665487(-) (9)	NA	Q6S4P4	Transcription factor RF2b	AT2G40620.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g21800.2	"bZIP transcription factor family protein, putative, expressed"	Medtr5g083200.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.7834.1.S1_at	A	A1TS	POPTR_0006s11980	POPTR_0006s11980 (10)	scaffold_6:9144992-9145609(-) (10)	NA	Q9ZSS6	"Threonine dehydratase biosynthetic, chloroplastic"	AT3G10050.1	L-O-methylthreonine resistant 1 	LOC_Os03g50510.1	"threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed"	Medtr1g073850.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0044283|small molecule biosynthetic process||GO:0009097|isoleucine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0004794|L-threonine ammonia-lyase activity	NA
Ptp.7834.1.S1_s_at	A	A1TS	POPTR_0006s11980	POPTR_0006s11980 (11)	scaffold_6:9145048-9145406(-) (11)	NA	Q9ZSS6	"Threonine dehydratase biosynthetic, chloroplastic"	AT3G10050.1	L-O-methylthreonine resistant 1 	LOC_Os03g50510.1	"threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed"	Medtr1g073850.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0044283|small molecule biosynthetic process||GO:0009097|isoleucine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0004794|L-threonine ammonia-lyase activity	NA
Ptp.7835.1.A1_at	A	A1TS	POPTR_0011s05120	POPTR_0011s05120 (11)	scaffold_11:5028827-5029209(-) (11)	NA	Q84JR3	"Pentatricopeptide repeat-containing protein At4g21705, mitochondrial"	AT4G21705.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7838.1.S1_s_at	A	A1TS	POPTR_0008s11480	POPTR_0008s11480 (11)	scaffold_8:7290575-7291009(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G25700.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g48330.1	"aspartyl protease family protein, putative, expressed"	Medtr5g098350.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7839.1.S1_at	A	A1TS	POPTR_0004s08240	POPTR_0004s08240 (10)	scaffold_4:6762987-6763329(+) (10)	NA	Q39263	Zinc finger protein 4	AT1G66140.1	zinc finger protein 4 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr3g087170.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.7841.1.A1_at	A	A1TS	POPTR_0013s07370	POPTR_0013s07370 (11)	scaffold_13:6149599-6150376(-) (11)	NA	NA	NA	AT1G09815.1	polymerase delta 4 	LOC_Os09g34850.3	"POLD4A - Putative DNA polymerase delta complex subunit, expressed"	AC235662_16.1	"DNA polymerase delta, subunit 4 AC235662.1 72274-71456 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	NA	GO:0005634|nucleus
Ptp.7842.1.A1_at	A	A1TS	POPTR_0015s03960	POPTR_0015s03960 (10)	scaffold_15:3857705-3858657(-) (10)	NA	NA	NA	AT3G18240.2	"Ribosomal protein S24/S35, mitochondrial "	LOC_Os08g40230.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7843.1.S1_s_at	A	A1TS	POPTR_0004s16030	POPTR_0004s16030 (11)	scaffold_4:16491265-16491339(-) (11)	NA	Q9SAA2	"ATP-dependent Clp protease proteolytic subunit 6, chloroplastic"	AT1G11750.1	CLP protease proteolytic subunit 6 	LOC_Os03g29810.1	"OsClp6 - Putative Clp protease homologue, expressed"	Medtr4g095340.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.7844.1.S1_s_at	A	A1TS	POPTR_0002s17630	POPTR_0002s17630 (11)	scaffold_2:13472854-13472933(+) (11)	NA	Q9LM76	U-box domain-containing protein 44	AT1G20780.1	senescence-associated E3 ubiquitin ligase 1 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.7846.1.S1_at	A	A1TS	POPTR_0004s07120	POPTR_0004s07120 (11)	scaffold_4:5899884-5900396(+) (11)	NA	Q84K34	E3 ubiquitin-protein ligase SINA-like 10	AT5G37930.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os06g20610.1	"seven in absentia protein family domain containing protein, expressed"	AC235662_15.1	TRAF-like AC235662.1 70113-67206 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7847.1.S1_s_at	A	A1TS	POPTR_0008s15560	POPTR_0008s15560 (11)	scaffold_8:10340192-10341017(+) (11)	NA	Q9LUJ3	Protein RDM1	AT3G22680.1	RNA-DIRECTED DNA METHYLATION 1 	LOC_Os06g42430.3	expressed protein	Medtr5g006750.1	Protein of unknown function DUF1950 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7848.1.A1_s_at	A	A1TS	POPTR_0005s05790	POPTR_0005s05790 (11)	scaffold_5:3792068-3792429(+) (11)	NA	P57722	Poly(rC)-binding protein 3	AT3G04610.1	RNA-binding KH domain-containing protein 	LOC_Os03g42900.1	"KH domain containing protein, putative, expressed"	Medtr8g129730.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.7851.1.S1_at	A	A1TS	POPTR_0013s10570	POPTR_0013s10570 (10)	scaffold_13:10912553-10912999(+) (10)	NA	NA	NA	AT1G14060.1	GCK domain-containing protein 	LOC_Os03g44520.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7853.1.S1_at	A	A1TS	POPTR_0009s02540	POPTR_0009s02540 (9)	scaffold_9:3312165-3312855(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7854.1.S1_s_at	A	A1TS	POPTR_0001s40210	POPTR_0001s40210 (11)	scaffold_1:39572244-39572528(-) (11)	NA	O82768	"Histidine biosynthesis bifunctional protein hisIE, chloroplastic"	AT1G31860.1	histidine biosynthesis bifunctional protein (HISIE) 	LOC_Os01g16940.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	NA	NA	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004635|phosphoribosyl-AMP cyclohydrolase activity||GO:0004636|phosphoribosyl-ATP diphosphatase activity	NA
Ptp.7855.1.S1_s_at	A	A1TS	POPTR_0006s26190	POPTR_0006s26190 (11)	scaffold_6:24465008-24465405(+) (11)	NA	Q9T0K5	Leucine-rich repeat extensin-like protein 3	AT4G13340.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g41120.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr4g158630.1	"leucine-rich repeat family protein, putative "	NA	GO:0005515|protein binding	NA
Ptp.7856.1.S1_at	A	A1TS	POPTR_0018s03390	POPTR_0018s03390 (9)	scaffold_18:2990676-2990933(-) (9)	POPTR_0006s28720 (6)	P84104	Serine/arginine-rich splicing factor 3	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.8	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.7858.1.S1_s_at	A	A1TS	POPTR_0010s19530	POPTR_0010s19530 (11)	scaffold_10:17419404-17421321(+) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g03640.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g094020.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.786.1.S1_at	A	A1TS	POPTR_0007s07710	POPTR_0007s07710 (11)	scaffold_7:6100658-6103036(-) (11)	NA	P54168	Uncharacterized protein ypgQ	AT1G17330.1	Metal-dependent phosphohydrolase 	LOC_Os10g34470.1	"HD domain containing protein 2, putative, expressed"	Medtr4g024680.1	"Metal-dependent phosphohydrolase, HD region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7860.1.A1_at	A	A1TS	POPTR_0001s31150	POPTR_0001s31150 (11)	scaffold_1:29488072-29488941(-) (11)	NA	Q58821	Uncharacterized protein MJ1426	AT4G36910.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os08g22149.1	"CBS domain containing membrane protein, putative, expressed"	Medtr5g016660.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7862.1.S1_at	A	A1TS	POPTR_0012s10300	POPTR_0012s10300 (10)	scaffold_12:11097578-11099475(-) (10)	NA	Q8RU27	"Alpha-1,4-glucan-protein synthase [UDP-forming] 2"	AT3G02230.1	reversibly glycosylated polypeptide 1 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
Ptp.7863.1.S1_at	A	A1TS	POPTR_0010s10850	POPTR_0010s10850 (11)	scaffold_10:11255316-11255818(+) (11)	NA	Q9ZUM0	Zinc finger CCCH domain-containing protein 17	AT2G02160.1	CCCH-type zinc finger family protein 	LOC_Os04g57600.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119790.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.7864.1.S1_at	A	A1TS	POPTR_0005s15150	POPTR_0005s15150 (9)	scaffold_5:11941818-11943872(+) (9)	NA	B6IPJ8	50S ribosomal protein L20	AT1G16740.1	Ribosomal protein L20 	LOC_Os05g45220.1	"50S ribosomal protein L20, putative, expressed"	Medtr5g094460.1	"Ribosomal protein L20, bacterial and organelle form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7865.1.S1_at	A	A1TS	POPTR_0014s01360	POPTR_0014s01360 (9)	scaffold_14:1338399-1338862(+) (9)	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	LOC_Os01g34780.2	"protein binding protein, putative, expressed"	Medtr4g101290.1	FF 	NA	GO:0005515|protein binding	NA
Ptp.7865.2.A1_at	A	A1TS	POPTR_0014s01370	POPTR_0014s01370 (10)	scaffold_14:1337982-1338471(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7866.2.S1_a_at	A	A1TS	POPTR_0008s02720	POPTR_0008s02720 (11)	scaffold_8:1380451-1380808(+) (11)	NA	A6QLT2	Myotubularin-related protein 2	AT3G10550.1	Myotubularin-like phosphatases II superfamily 	LOC_Os08g44260.1	"inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed"	Medtr1g116840.1	Myotubularin-related 	GO:0016311|dephosphorylation	GO:0016791|phosphatase activity	NA
Ptp.7867.1.S1_s_at	A	A1TS	POPTR_0018s04250	POPTR_0018s04250 (11)	scaffold_18:3589273-3590948(+) (11)	NA	Q8GWT4	Protein arginine N-methyltransferase 5	AT4G31120.1	SHK1 binding protein 1 	LOC_Os02g04660.1	"arginine N-methyltransferase 5, putative, expressed"	Medtr3g133650.1	Skb1 methyltransferase 	NA	GO:0008168|methyltransferase activity	GO:0005737|cytoplasm
Ptp.7870.1.A1_s_at	A	A1TS	POPTR_0010s18800	POPTR_0010s18800 (11)	scaffold_10:16934282-16934448(+) (11)	NA	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.7870.2.S1_at	A	A1TS	POPTR_0010s18800	POPTR_0010s18800 (9)	scaffold_10:16931192-16933394(+) (9)	NA	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.7870.2.S1_s_at	A	A1TS	POPTR_0010s18800	POPTR_0010s18800 (11)	scaffold_10:16932086-16933718(+) (11)	POPTR_0008s07680 (6)	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.7872.1.A1_at	A	A1TS	POPTR_0014s03570	POPTR_0014s03570 (10)	scaffold_14:2846679-2846911(-) (10)	NA	O04348	"Thylakoidal processing peptidase 1, chloroplastic"	AT2G30440.1	thylakoid processing peptide 	LOC_Os09g28000.1	"OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr3g148730.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7872.1.A1_s_at	A	A1TS	POPTR_0014s03570	POPTR_0014s03570 (11)	scaffold_14:2847035-2847147(-) (11)	NA	O04348	"Thylakoidal processing peptidase 1, chloroplastic"	AT2G30440.1	thylakoid processing peptide 	LOC_Os09g28000.1	"OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr3g148730.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7877.1.A1_at	A	A2TS	POPTR_0014s06970	POPTR_0014s06970 (11)//POPTR_0002s15270 (10)	scaffold_14:5248454-5248586(-) (11)//scaffold_2:11413853-11413922(-) (10)	NA	Q9LE59	"Alpha-1,4-galacturonosyltransferase 1"	AT3G61130.1	galacturonosyltransferase 1 	LOC_Os09g36190.1	"glycosyl transferase family 8, putative, expressed"	Medtr7g083410.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.7877.1.A1_s_at	A	A1TS	POPTR_0014s06970	POPTR_0014s06970 (11)	scaffold_14:5248109-5248454(-) (11)	NA	Q9LE59	"Alpha-1,4-galacturonosyltransferase 1"	AT3G61130.1	galacturonosyltransferase 1 	LOC_Os09g36190.1	"glycosyl transferase family 8, putative, expressed"	Medtr7g083410.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.7878.1.S1_s_at	A	A1TS	POPTR_0008s19860	POPTR_0008s19860 (11)	scaffold_8:13711467-13711678(+) (11)	NA	Q9D832	DnaJ homolog subfamily B member 4	AT1G10350.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	AC235756_5.1	Heat shock protein DnaJ AC235756.1 49207-45302 F EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.7881.1.S1_at	A	A1TS	POPTR_0002s14890	POPTR_0002s14890 (9)	scaffold_2:11023698-11024312(+) (9)	NA	P51102	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.7882.1.S1_at	A	A1TS	POPTR_0019s13440	POPTR_0019s13440 (10)	scaffold_19:14361193-14361698(+) (10)	NA	Q9LR67	"Pentatricopeptide repeat-containing protein At1g03560, mitochondrial"	AT1G03560.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g30930.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr5g102690.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7883.1.S1_at	A	A1TS	POPTR_0015s11330	POPTR_0015s11330 (11)	scaffold_15:11920711-11922429(-) (11)	NA	Q9SW27	Membrane-anchored ubiquitin-fold protein 3	AT4G24990.1	Ubiquitin family protein 	LOC_Os04g32270.1	"membrane-anchored ubiquitin-fold protein, putative, expressed"	Medtr7g148240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7884.1.A1_at	A	A1TS	POPTR_0012s04250	POPTR_0012s04250 (11)	scaffold_12:3486539-3486725(+) (11)	NA	Q15526	Surfeit locus protein 1	AT3G17910.1	Surfeit locus 1 cytochrome c oxidase biogenesis protein 	LOC_Os03g10360.1	"SURF1, putative, expressed"	Medtr6g083260.1	Surfeit locus 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7884.1.A1_s_at	A	A1TS	POPTR_0012s04250	POPTR_0012s04250 (11)	scaffold_12:3485618-3486439(+) (11)	NA	Q15526	Surfeit locus protein 1	AT3G17910.1	Surfeit locus 1 cytochrome c oxidase biogenesis protein 	LOC_Os03g10360.1	"SURF1, putative, expressed"	Medtr6g083260.1	Surfeit locus 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7885.1.S1_a_at	A	A1TS	POPTR_0019s03790	POPTR_0019s03790 (11)	scaffold_19:3869287-3869590(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT2G02540.1	homeobox protein 21 	LOC_Os08g37400.1	"ZF-HD homeobox protein, putative, expressed"	Medtr5g020380.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Zinc finger, C2H2-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7888.1.S1_s_at	A	A1TS	POPTR_0006s01160	POPTR_0006s01160 (11)	scaffold_6:641507-641678(-) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7890.1.S1_at	A	A1TS	POPTR_0009s14620	POPTR_0009s14620 (9)	scaffold_9:11425160-11425268(-) (9)	NA	P54751	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1"	AT1G08280.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os01g63970.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g069790.1	"Glycosyl transferase, family 29; Immunoglobulin/major histocompatibility complex "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
Ptp.7891.3.S1_a_at	A	A1TS	POPTR_0016s14990	POPTR_0016s14990 (11)	scaffold_16:14049536-14050047(+) (11)	NA	NA	NA	AT5G01015.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65295.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g02800.2	"CRP11 - Cysteine-rich family protein precursor, expressed"	Medtr7g081040.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7892.1.A1_at	A	A1TS	POPTR_0001s01840	POPTR_0001s01840 (11)	scaffold_1:1346102-1346485(+) (11)	NA	P23922	Transcription factor HBP-1a	AT2G35530.1	basic region/leucine zipper transcription factor 16 	LOC_Os12g13170.2	"transcription factor, putative, expressed"	Medtr5g028830.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.7894.1.A1_at	A	A1TS	POPTR_0005s05900	POPTR_0005s05900 (10)	scaffold_5:3877222-3878285(+) (10)	NA	Q10Y48	Uridylate kinase	AT3G18680.1	Amino acid kinase family protein 	LOC_Os01g73450.1	"amino acid kinase, putative, expressed"	Medtr4g142340.1	Aspartate/glutamate/uridylate kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
Ptp.7895.1.A1_s_at	A	A1TS	POPTR_0014s10700	POPTR_0014s10700 (11)	scaffold_14:7986614-7987058(-) (11)	NA	Q8L5W8	Transcription factor PIL1	AT2G46970.1	phytochrome interacting factor 3-like 1 	LOC_Os01g18290.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g103000.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.7899.1.S1_at	A	A1TA	POPTR_0007s10770	POPTR_0007s10770 (10)	scaffold_7:10830161-10830572(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.79.1.S1_at	A	A1TS	POPTR_0017s01890	POPTR_0017s01890 (11)	scaffold_17:1385173-1386542(-) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g38260.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.79.1.S1_x_at	A	A1TS	POPTR_0017s01890	POPTR_0017s01890 (11)	scaffold_17:1385173-1386542(-) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g38260.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7901.1.S1_at	A	A1TS	POPTR_0009s11780	POPTR_0009s11780 (11)	scaffold_9:9711340-9711427(+) (11)	NA	Q8VY05	SWI/SNF complex subunit SWI3D	AT4G34430.3	DNA-binding family protein 	LOC_Os03g51220.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed"	Medtr4g095380.1	"Zinc finger, ZZ-type; SWIRM; Homeodomain-related "	NA	GO:0008270|zinc ion binding	NA
Ptp.7903.1.S1_at	A	A1TS	POPTR_0001s34440	POPTR_0001s34440 (11)	scaffold_1:32581786-32582088(+) (11)	NA	NA	NA	AT1G29350.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os01g47430.2	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr4g136700.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7904.1.S1_at	A	A1TS	POPTR_0006s10920	POPTR_0006s10920 (9)	scaffold_6:8290766-8291581(+) (9)	NA	NA	NA	AT2G38550.1	Transmembrane proteins 14C 	LOC_Os01g60650.1	"non-green plastid inner envelope membrane protein, putative, expressed"	Medtr7g080440.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
Ptp.7905.1.S1_at	A	A1TS	POPTR_0003s14480	POPTR_0003s14480 (9)	scaffold_3:14567439-14567819(+) (9)	NA	Q7XJU0	Uncharacterized basic helix-loop-helix protein At1g64625	AT2G27230.2	transcription factor-related 	LOC_Os02g45170.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7906.1.S1_s_at	A	A1TS	POPTR_0011s16450	POPTR_0011s16450 (11)	scaffold_11:18364124-18364478(-) (11)	NA	NA	NA	AT2G34780.2	maternal effect embryo arrest 22 	LOC_Os01g56290.1	expressed protein	AC147501_20.1	hypothetical protein AC147501.9 80184-71093 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
Ptp.7907.1.A1_at	A	A1TS	POPTR_0013s02590	POPTR_0013s02590 (11)	scaffold_13:1532355-1532833(-) (11)	NA	Q6AXS0	Sodium/potassium/calcium exchanger 6	AT1G08960.1	cation exchanger 11 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr7g139480.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
Ptp.7909.2.A1_at	A	A1MS	POPTR_0017s04370	POPTR_0017s04370 (9)	NA	NA	P84786	Ribosome-inactivating protein charybdin	NA	NA	LOC_Os01g06740.1	"ribosome inactivating protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0017148|negative regulation of translation	GO:0030598|rRNA N-glycosylase activity	NA
Ptp.791.1.S1_s_at	A	A1TS	POPTR_0009s09870	POPTR_0009s09870 (11)	scaffold_9:8645619-8646036(+) (11)	NA	P31657	Probable cinnamyl alcohol dehydrogenase	AT3G19450.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os02g09490.1	"dehydrogenase, putative, expressed"	Medtr5g032800.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.7910.1.S1_at	A	A1TS	POPTR_0003s06390	POPTR_0003s06390 (10)	scaffold_3:7876688-7876978(-) (11)	NA	NA	NA	AT1G54150.1	E3 Ubiquitin ligase family protein 	LOC_Os03g08000.1	expressed protein	Medtr8g025010.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7912.1.S1_at	A	A1TS	POPTR_0018s09750	POPTR_0018s09750 (11)	scaffold_18:10784716-10785026(-) (11)	NA	Q03194	Plasma membrane ATPase 4	AT2G18960.1	H(+)-ATPase 1 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.7915.1.S1_at	A	A1TS	POPTR_0009s14890	POPTR_0009s14890 (10)	scaffold_9:11573418-11573834(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7918.1.S1_s_at	A	A1TS	POPTR_0007s02140	POPTR_0007s02140 (11)	scaffold_7:1265566-1266034(+) (11)	NA	Q8VZR6	Probable inositol transporter 1	AT2G43330.1	inositol transporter 1 	LOC_Os04g41460.1	"transporter family protein, putative, expressed"	Medtr7g005590.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.7919.1.S1_s_at	A	A1MA	POPTR_0009s10990	POPTR_0009s10990 (11)	scaffold_9:9284967-9285061(+) (11)	NA	O74503	Upstream activation factor subunit spp27	AT1G49520.1	SWIB complex BAF60b domain-containing protein 	LOC_Os03g55570.1	"upstream activation factor subunit spp27, putative, expressed"	Medtr5g017990.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.792.1.S1_at	A	A1TS	POPTR_0016s09010	POPTR_0016s09010 (11)	scaffold_16:6839473-6839509(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.792.1.S1_s_at	A	A1TS	POPTR_0016s09010	POPTR_0016s09010 (11)	scaffold_16:6839548-6839972(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7921.1.S1_a_at	A	A1TS	POPTR_0005s18890	POPTR_0005s18890 (11)	scaffold_5:17305527-17305736(-) (11)	NA	Q9URY7	Putative formamidase C869.04	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008152|metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	NA
Ptp.7921.1.S1_s_at	A	A1TS	POPTR_0005s18890	POPTR_0005s18890 (11)	scaffold_5:17304869-17305684(-) (11)	NA	Q9URY7	Putative formamidase C869.04	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008152|metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	NA
Ptp.7927.1.S1_s_at	A	A1TS	POPTR_0002s16770	POPTR_0002s16770 (9)	scaffold_2:12537242-12537359(+) (11)	NA	NA	NA	AT4G01210.1	glycosyl transferase family 1 protein 	LOC_Os01g43380.1	"glycosyltransferase family protein 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7929.1.S1_at	A	A1TS	POPTR_0013s00920	POPTR_0013s00920 (11)	scaffold_13:467770-468055(-) (11)	NA	O80482	Transcription factor bHLH149	AT1G09250.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g19780.1	expressed protein	Medtr8g137080.1	transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7930.1.S1_s_at	A	A1TA	POPTR_0005s13780	POPTR_0005s13780 (11)	scaffold_5:10774584-10774767(-) (11)	POPTR_0007s12170 (7)	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.1	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.7931.1.A1_s_at	A	A1TS	POPTR_0006s09410	POPTR_0006s09410 (9)	scaffold_6:6935059-6935102(+) (9)	NA	NA	NA	AT3G54000.1	CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr7g071270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7932.1.S1_at	A	A1TS	POPTR_0011s07250	POPTR_0011s07250 (11)	scaffold_11:8006977-8007412(-) (11)	NA	C0LGQ4	Probable LRR receptor-like serine/threonine-protein kinase MRH1	AT4G18640.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr4g134770.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.7934.1.S1_at	A	A1MS	POPTR_0014s04690	POPTR_0014s04690 (9)	scaffold_14:3595065-3595772(+) (9)	NA	NA	NA	AT1G02120.1	GRAM domain family protein 	LOC_Os07g30940.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7935.1.S1_a_at	A	A1TS	POPTR_0008s15050	POPTR_0008s15050 (11)	scaffold_8:10029317-10029499(-) (11)	NA	Q94AZ2	Sugar transport protein 13	AT5G26340.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.7937.1.S1_s_at	A	A1TS	POPTR_0019s05380	POPTR_0019s05380 (11)	scaffold_19:5722719-5722973(-) (11)	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
Ptp.794.1.S1_s_at	A	A2TS	POPTR_0006s25760	POPTR_0018s00610 (11)//POPTR_0006s25760 (11)	scaffold_18:541496-542760(-) (11)//scaffold_6:24141315-24142641(-) (11)	NA	Q8LGF7	Probable ubiquitin-conjugating enzyme E2 21	AT5G25760.2	peroxin4 	LOC_Os02g42314.2	"ubiquitin-conjugating enzyme, putative, expressed"	AC225507_19.1	"Ubiquitin-conjugating enzyme, E2 AC225507.11 87281-91188 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.7940.1.S1_at	A	A1MS	POPTR_0007s13450	POPTR_0007s13450 (9)	scaffold_7:13536069-13536540(+) (10)	NA	Q8BMG8	Mitochondrial folate transporter/carrier	AT5G66380.1	folate transporter 1 	LOC_Os03g52430.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g092650.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7942.1.S1_at	A	A1TS	POPTR_0015s10750	POPTR_0015s10750 (10)	scaffold_15:11581898-11582654(-) (10)	NA	O75643	U5 small nuclear ribonucleoprotein 200 kDa helicase	AT1G20960.2	"U5 small nuclear ribonucleoprotein helicase, putative "	LOC_Os02g01740.1	"U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed"	Medtr2g076960.1	AAA ATPase; Sec63; ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.7944.1.S1_s_at	A	A1TS	POPTR_0014s09390	POPTR_0014s09390 (11)	scaffold_14:6966807-6967229(-) (11)	NA	Q9M365	Probable F-box protein At3g61730	AT5G36000.1	BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g11990.1	expressed protein	AC235758_10.1	Cyclin-like F-box AC235758.1 51077-54013 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7946.1.S1_at	A	A1MS	POPTR_0011s13250	POPTR_0011s13250 (10)	scaffold_11:15947563-15948120(-) (10)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7947.1.S1_s_at	A	A1TS	POPTR_0004s04900	POPTR_0004s04900 (11)	scaffold_4:3666879-3667135(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.7949.1.S1_at	A	A1TS	POPTR_0008s08460	POPTR_0008s08460 (11)	scaffold_8:5241806-5242514(-) (11)	NA	Q03640	Tricalbin-3	AT3G19830.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g58230.1	"C2 domain containing protein, putative, expressed"	Medtr8g112680.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.795.3.S1_s_at	A	A1MS	POPTR_0007s12770	POPTR_0007s12770 (11)	scaffold_7:13032037-13032335(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7952.1.S1_at	A	A1TS	POPTR_0003s09330	POPTR_0003s09330 (9)	scaffold_3:10641856-10642095(-) (9)	NA	O23617	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5"	AT4G17770.1	trehalose phosphatase/synthase 5 	LOC_Os09g23350.1	"trehalose synthase, putative, expressed"	Medtr4g156760.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.7953.1.S1_at	A	A1TS	POPTR_0018s13050	POPTR_0018s13050 (10)	scaffold_18:13514837-13517266(+) (10)	NA	Q9LDI3	CBL-interacting serine/threonine-protein kinase 24	AT5G35410.1	Protein kinase superfamily protein 	LOC_Os06g40370.1	"CAMK_KIN1/SNF1/Nim1_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g120590.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7954.1.S1_at	A	A1TS	POPTR_0009s11720	POPTR_0009s11720 (9)	scaffold_9:9675097-9675359(-) (9)	NA	Q942D4	BURP domain-containing protein 3	AT1G49320.1	unknown seed protein like 1 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr3g159620.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7955.1.S1_at	A	A1MS	POPTR_0010s04780	POPTR_0010s04780 (11)	scaffold_10:5928009-5928386(-) (11)	NA	O04536	Probable galacturonosyltransferase-like 9	AT1G70090.2	glucosyl transferase family 8 	LOC_Os02g50600.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr5g037690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.7956.2.S1_s_at	A	A2TS	POPTR_0003s02450	POPTR_0003s02450 (11)//POPTR_0003s02460 (11)	scaffold_3:2541350-2541511(+) (11)//scaffold_3:2553727-2553888(+) (11)	NA	D4N502	Codeine O-demethylase	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08032.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr8g088440.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7958.1.S1_at	A	A1TS	POPTR_0005s21390	POPTR_0005s21390 (9)	scaffold_5:20495752-20495987(+) (9)	NA	NA	NA	AT1G21200.1	sequence-specific DNA binding transcription factors 	LOC_Os12g06640.2	"homeodomain, putative, expressed"	Medtr1g125320.1	"Homeodomain-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.796.2.S1_at	A	A1TS	POPTR_0003s17010	POPTR_0003s17010 (11)	scaffold_3:16521088-16521124(+) (11)	NA	P10708	"Chlorophyll a-b binding protein 7, chloroplastic"	AT3G61470.1	photosystem I light harvesting complex gene 2 	LOC_Os07g38960.1	"chlorophyll A-B binding protein, putative, expressed"	AC233662_10.1	Chlorophyll A-B binding protein AC233662.1 39478-42517 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.7962.1.S1_a_at	A	A1TS	POPTR_0004s02870	POPTR_0004s02870 (11)	scaffold_4:1914976-1915430(-) (11)	POPTR_0011s03560 (6)	Q94JL3	Transcription factor bHLH112	AT1G61660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g42180.1	"ethylene-responsive protein related, putative"	Medtr2g011150.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.7965.1.S1_a_at	A	A1TS	POPTR_0005s21110	POPTR_0005s21110 (11)	scaffold_5:20246811-20247029(-) (11)	NA	C0LGV1	LRR receptor-like serine/threonine-protein kinase RCH1	AT5G48940.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os04g04330.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g124960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.7965.2.S1_s_at	A	A1TS	POPTR_0014s14620	POPTR_0014s14620 (11)	scaffold_14:10686126-10686450(-) (11)	NA	Q9Z321	DNA topoisomerase 3-beta-1	AT2G32000.1	"DNA topoisomerase, type IA, core "	LOC_Os09g32450.1	"DNA topoisomerase 3 protein, putative, expressed"	Medtr3g104340.1	DNA topoisomerase I; N-6 Adenine-specific DNA methylase; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003916|DNA topoisomerase activity	GO:0005694|chromosome
Ptp.7966.1.S1_s_at	A	A1TS	POPTR_0003s15190	POPTR_0003s15190 (11)	scaffold_3:15048990-15049042(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7971.1.S1_s_at	A	A1TS	POPTR_0005s22640	POPTR_0005s22640 (11)	scaffold_5:21560096-21561112(-) (11)	NA	Q9C8L4	"Hydroxyacylglutathione hydrolase 3, mitochondrial"	AT1G53580.1	glyoxalase II  3 	LOC_Os01g47690.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr5g077130.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7972.2.S1_at	A	A1TS	POPTR_0001s35480	POPTR_0001s35480 (11)	scaffold_1:33812976-33814394(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G50180.1	Protein kinase superfamily protein 	LOC_Os02g38080.2	"protein kinase domain containing protein, expressed"	Medtr3g114810.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7976.1.S1_at	A	A2TS	POPTR_0015s08660	POPTR_0015s08660 (11)//POPTR_0012s08160 (9)	scaffold_12:9210983-9211032(+) (9)//scaffold_15:9975452-9975506(+) (11)	NA	Q7Z494	Nephrocystin-3	AT1G27500.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7976.1.S1_s_at	A	A1TS	POPTR_0015s08660	POPTR_0015s08660 (11)	scaffold_15:9975897-9976299(+) (11)	NA	Q7Z494	Nephrocystin-3	AT1G27500.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7977.1.A1_at	A	A1TS	POPTR_0006s09300	POPTR_0006s09300 (10)	scaffold_6:6829938-6830467(-) (10)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT3G53940.1	Mitochondrial substrate carrier family protein 	LOC_Os03g16080.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g088430.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.798.1.A1_at	A	A1TS	POPTR_0005s08430	POPTR_0005s08430 (11)	scaffold_5:5818988-5819368(+) (11)	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.798.1.A1_x_at	A	A1TS	POPTR_0005s08430	POPTR_0005s08430 (11)	scaffold_5:5818847-5819377(+) (11)	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7980.1.S1_at	A	A1TS	POPTR_0006s24060	POPTR_0006s24060 (9)	scaffold_6:22747110-22747988(-) (9)	NA	NA	NA	AT5G26160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20610.1); Has 197 Blast hits to 158 proteins in 44 species: Archae - 0; Bacteria - 14; Metazoa - 28; Fungi - 15; Plants - 117; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os01g51640.1	expressed protein	Medtr1g019330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7982.1.S1_s_at	A	A1TS	POPTR_0006s08180	POPTR_0006s08180 (11)	scaffold_6:5943770-5945880(-) (11)	NA	NA	NA	AT5G24710.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g46510.1	"peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed"	Medtr7g134460.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7983.1.S1_s_at	A	A1TS	POPTR_0015s08020	POPTR_0015s08020 (11)	scaffold_15:9301189-9301629(-) (11)	NA	Q869R9	Myb-like protein J	AT1G19000.2	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr5g038100.1	"Zinc finger, CCHC-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7984.1.S1_s_at	A	A1TS	POPTR_0002s10970	POPTR_0002s10970 (11)	scaffold_2:8003251-8003334(+) (11)	NA	Q9STV4	CBL-interacting serine/threonine-protein kinase 8	AT4G24400.1	CBL-interacting protein kinase 8 	LOC_Os01g35184.2	"CAMK_KIN1/SNF1/Nim1_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g076080.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7985.1.S1_at	A	A1TS	POPTR_0019s08340	POPTR_0019s08340 (10)	scaffold_19:9847679-9847867(-) (10)	NA	Q8VZR7	Probable peptide/nitrate transporter At2g40460	AT2G40460.1	Major facilitator superfamily protein 	LOC_Os10g33210.1	"peptide transporter PTR3-A, putative, expressed"	Medtr3g097370.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.7988.1.S1_at	A	A1MS	POPTR_0003s07420	POPTR_0003s07420 (11)	scaffold_3:8982584-8982984(-) (11)	NA	Q39079	Chaperone protein dnaJ 13	AT2G35720.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g36370.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g012600.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.799.1.S1_s_at	A	A1TS	POPTR_0015s06060	POPTR_0015s06060 (11)	scaffold_15:6352642-6354622(+) (11)	NA	P35133	Ubiquitin-conjugating enzyme E2 10	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.7990.1.A1_s_at	A	A1TS	POPTR_0005s27320	POPTR_0005s27320 (11)	scaffold_5:25020917-25021345(-) (11)	NA	P56941	Niemann-Pick C1 protein	AT4G38350.1	Patched family protein 	LOC_Os04g47590.1	"niemann-Pick C1 protein precursor, putative, expressed"	Medtr5g106700.1	Sterol-sensing 5TM box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7991.1.A1_at	A	A1TS	POPTR_0014s05510	POPTR_0014s05510 (11)	scaffold_14:4128059-4128468(-) (11)	NA	Q8RXD6	E3 ubiquitin-protein ligase BRE1-like 1	AT2G44950.1	histone mono-ubiquitination 1 	LOC_Os04g46450.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g040330.1	"Zinc finger, DksA/TraR C4-type; Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7993.1.S1_at	A	A1TS	POPTR_0014s07060	POPTR_0014s07060 (9)	scaffold_14:5334588-5335032(+) (9)	NA	O65351	Subtilisin-like protease	AT1G01900.1	subtilase family protein 	LOC_Os04g48416.1	"OsSub45 - Putative Subtilisin homologue, expressed"	Medtr7g083510.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.7995.1.S1_at	A	A1MS	POPTR_0009s10140	POPTR_0009s10140 (9)	scaffold_9:8796290-8796799(+) (9)	NA	Q8W3M4	Uncharacterized protein At4g06744	AT4G06744.1	Leucine-rich repeat (LRR) family protein 	LOC_Os04g57430.1	"uncharacterized protein At4g06744 precursor, putative"	Medtr4g130400.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
Ptp.7996.1.S1_at	A	A1TS	POPTR_0011s05280	POPTR_0011s05280 (9)	scaffold_11:5160166-5160318(-) (9)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7998.1.A1_at	A	A1TS	POPTR_0005s28070	POPTR_0005s28070 (11)	scaffold_5:25461035-25461481(+) (11)	NA	NA	NA	AT1G21050.1	"Protein of unknown function, DUF617 "	LOC_Os02g47980.1	"DUF617 domain containing protein, expressed"	Medtr3g102280.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7999.1.S1_at	A	A1MA	POPTR_0003s14370	POPTR_0003s14370 (9)	scaffold_3:14453522-14454015(+) (9)	NA	Q54ML1	Glutamine-dependent NAD(+) synthetase	AT1G55090.1	carbon-nitrogen hydrolase family protein 	LOC_Os07g07260.1	"glutamine-dependent NAD, putative, expressed"	NA	NA	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
Ptp.8.1.A1_at	A	A1MS	POPTR_0001s43610	POPTR_0001s43610 (11)	scaffold_1:43816627-43816679(+) (11)//scaffold_1:45322594-45322646(+) (11)	NA	NA	NA	AT5G54900.1	RNA-binding protein 45A 	LOC_Os03g37270.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.80.1.S1_s_at	A	A1TS	POPTR_0009s11580	POPTR_0009s11580 (11)	scaffold_9:9600976-9601396(-) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.800.1.S1_s_at	A	A1TS	POPTR_0009s12790	POPTR_0009s12790 (11)	scaffold_9:10376783-10377641(-) (11)	NA	P59227	V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5	AT4G34720.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os02g34510.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.8005.1.S1_at	A	A1TS	POPTR_0018s12110	POPTR_0018s12110 (9)	scaffold_18:12684568-12685207(-) (9)	NA	NA	NA	AT5G35180.2	Protein of unknown function (DUF1336) 	LOC_Os08g34060.2	"DUF1336 domain containing protein, expressed"	Medtr1g120740.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8006.1.S1_s_at	A	A1TS	POPTR_0018s07360	POPTR_0018s07360 (11)	scaffold_18:7571931-7572117(+) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G43220.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.1	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8010.1.A1_s_at	A	A1TS	POPTR_0013s08170	POPTR_0013s08170 (10)	scaffold_13:7193741-7195785(-) (11)	NA	Q9Y394	Dehydrogenase/reductase SDR family member 7	AT3G03330.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os11g16410.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g090010.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8014.1.S1_at	A	A1TS	POPTR_0008s11870	POPTR_0008s11870 (10)	scaffold_8:7616532-7616945(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8015.1.S1_at	A	A1TS	POPTR_0011s04490	POPTR_0011s04490 (11)	scaffold_11:4454538-4455645(-) (11)	NA	Q8H5X5	Secretory carrier-associated membrane protein 1	AT1G61250.1	secretory carrier 3 	LOC_Os07g37740.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
Ptp.8017.2.A1_a_at	A	A1MS	POPTR_0003s08150	POPTR_0003s08150 (9)	scaffold_3:9568341-9570471(-) (11)	NA	Q8LB10	"ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic"	AT4G17040.1	CLP protease R subunit 4 	LOC_Os01g16530.1	"OsClp1 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.8018.1.S1_at	A	A1TS	POPTR_0016s07250	POPTR_0016s07250 (10)	scaffold_16:5087745-5088296(-) (10)	NA	P42730	Heat shock protein 101	AT3G52490.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g33980.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr1g112350.1	"Immunoglobulin/major histocompatibility complex; Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.802.1.S1_s_at	A	A1TS	POPTR_0006s09410	POPTR_0006s09410 (11)	scaffold_6:6936657-6936913(+) (11)	NA	NA	NA	AT3G54000.1	CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr7g071270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8020.1.A1_at	A	A2TA	POPTR_0001s05470	POPTR_0001s05470 (11)//POPTR_0001s05450 (9)	scaffold_1:4188768-4189075(-) (9)//scaffold_1:4196712-4197109(+) (11)	NA	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.8020.2.A1_at	A	A1TS	POPTR_0001s05470	POPTR_0001s05470 (11)	scaffold_1:4196564-4196974(-) (11)	POPTR_0001s05450 (6)	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.8022.1.S1_s_at	A	A1TS	POPTR_0320s00210	POPTR_0320s00210 (11)	scaffold_320:8093-8599(-) (11)//scaffold_4:17798925-17799431(+) (11)	NA	Q9URY4	Putative amidase C869.01	AT4G34880.1	Amidase family protein 	LOC_Os04g10530.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
Ptp.8023.1.S1_s_at	A	A1TS	POPTR_0018s03710	POPTR_0018s03710 (11)	scaffold_18:3159003-3161740(-) (11)	NA	NA	NA	AT5G10710.1	"INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g21610.1	expressed protein	Medtr3g133360.1	hypothetical protein 	GO:0051301|cell division||GO:0007059|chromosome segregation	GO:0005515|protein binding	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
Ptp.8024.1.S1_at	A	A1MA	POPTR_0005s23010	POPTR_0005s23010 (9)	scaffold_5:21859236-21859729(-) (11)	NA	Q9FT81	Transcription factor TT8	AT4G09820.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g11020.1	rc - bHLH transcription factor regulating proanthocyanidin production in seeds	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8027.1.S1_at	A	A1TS	POPTR_0015s08410	POPTR_0015s08410 (10)	scaffold_15:9692851-9693398(+) (10)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50840.2	"BAH domain containing protein, putative, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
Ptp.803.2.S1_a_at	A	A1TS	POPTR_0010s25740	POPTR_0010s25740 (11)	scaffold_10:21279186-21280247(-) (11)	NA	Q9LHP1	60S ribosomal protein L7-4	AT3G13580.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.8030.1.S1_at	A	A1TS	POPTR_0014s01940	POPTR_0014s01940 (11)	scaffold_14:1746509-1746850(-) (11)	NA	P49098	Cytochrome b5	AT5G48810.1	cytochrome B5 isoform D 	LOC_Os10g37420.2	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	AC232874_19.1	"Cytochrome b5, related AC232874.1 63163-63766 E EGN_Mt090430 200"	NA	GO:0020037|heme binding	NA
Ptp.8030.1.S1_s_at	A	A1TS	POPTR_0014s01940	POPTR_0014s01940 (11)	scaffold_14:1746367-1746775(-) (11)	NA	P49098	Cytochrome b5	AT5G48810.1	cytochrome B5 isoform D 	LOC_Os10g37420.2	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	AC232874_19.1	"Cytochrome b5, related AC232874.1 63163-63766 E EGN_Mt090430 200"	NA	GO:0020037|heme binding	NA
Ptp.8031.1.A1_at	A	A1TS	POPTR_0009s12840	POPTR_0009s12840 (9)	scaffold_9:10408596-10409040(+) (9)	NA	Q9T0J6	tRNA-dihydrouridine synthase 3-like	AT4G38890.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os04g02730.1	"tRNA-dihydrouridine synthase 3-like, putative, expressed"	Medtr3g163110.1	"Zinc finger, CCCH-type; Dihydrouridine synthase, DuS "	GO:0044260|cellular macromolecule metabolic process||GO:0008033|tRNA processing||GO:0055114|oxidation reduction	GO:0003676|nucleic acid binding||GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity||GO:0008270|zinc ion binding	NA
Ptp.8034.1.S1_at	A	A1MS	POPTR_0007s05110	POPTR_0007s05110 (10)	scaffold_7:3306061-3306587(+) (10)	NA	Q5ZLV4	tRNA (cytosine-5-)-methyltransferase NSUN2	AT2G22400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g29630.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr3g101990.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8036.1.S1_at	A	A1TS	POPTR_0014s06660	POPTR_0014s06660 (11)	scaffold_14:5055472-5056543(-) (11)	NA	Q9LPC6	Armadillo repeat-containing kinesin-like protein 2	AT1G01950.1	armadillo repeat kinesin 2 	LOC_Os06g04560.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.8038.1.A1_s_at	A	A1TS	POPTR_0009s10480	POPTR_0009s10480 (11)	scaffold_9:9003277-9003563(-) (11)	NA	P40781	Protein CYPRO4	AT3G19240.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g08190.1	"CYPRO4, putative, expressed"	Medtr4g129640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8039.1.S1_at	A	A1TS	POPTR_0003s11320	POPTR_0003s11320 (10)	scaffold_3:12166158-12166711(-) (10)//scaffold_3:19124117-19124670(-) (9)	POPTR_0003s20650 (8)	P17407	21 kDa protein	AT4G12390.1	pectin methylesterase inhibitor 1 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr5g012150.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.804.1.S1_at	A	A1TS	POPTR_0015s15690	POPTR_0015s15690 (11)	scaffold_15:14912247-14914007(+) (11)	NA	Q9MAS5	Putative vesicle-associated membrane protein 726	AT1G04760.1	vesicle-associated membrane protein 726 	LOC_Os03g06960.1	"vesicle-associated membrane protein, putative, expressed"	Medtr4g114750.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.8040.1.S1_at	A	A1TS	POPTR_0001s14410	POPTR_0001s14410 (9)	scaffold_1:11305027-11305418(-) (9)	NA	Q55680	Uncharacterized protein sll0005	AT3G24190.1	Protein kinase superfamily protein 	LOC_Os02g57160.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8041.1.A1_at	A	A1TS	POPTR_0017s07250	POPTR_0017s07250 (11)	scaffold_17:5627579-5627802(-) (11)	NA	Q54PY7	Probable mitochondrial 2-oxoglutarate/malate carrier protein	AT2G22500.1	uncoupling protein 5 	LOC_Os08g37370.2	"mitochondrial carrier protein, putative, expressed"	Medtr5g033920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8041.2.A1_s_at	A	A4TS	POPTR_0017s07250	POPTR_0017s07270 (11)//POPTR_0017s07510 (11)//POPTR_0017s07250 (11)//POPTR_0017s07260 (11)	scaffold_17:5627892-5628096(-) (11)//scaffold_17:5634920-5635124(-) (11)//scaffold_17:5640000-5640204(-) (11)//scaffold_17:5843876-5844080(+) (11)	POPTR_0017s07280 (7)	Q54PY7	Probable mitochondrial 2-oxoglutarate/malate carrier protein	AT2G22500.1	uncoupling protein 5 	LOC_Os08g37370.2	"mitochondrial carrier protein, putative, expressed"	Medtr5g033920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8042.1.S1_at	A	A1TS	POPTR_0017s12090	POPTR_0017s12090 (9)	scaffold_17:12249784-12250433(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8043.1.S1_at	A	A1MS	POPTR_0019s09110	POPTR_0019s09110 (9)	scaffold_19:10680540-10682737(+) (9)	NA	Q68F45	WD repeat domain phosphoinositide-interacting protein 3	AT2G40810.2	homolog of yeast autophagy 18C 	LOC_Os01g07400.2	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8043.1.S1_s_at	A	A1TS	POPTR_0019s09110	POPTR_0019s09110 (11)	scaffold_19:10680603-10682623(+) (11)	NA	Q68F45	WD repeat domain phosphoinositide-interacting protein 3	AT2G40810.2	homolog of yeast autophagy 18C 	LOC_Os01g07400.2	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8044.1.S1_at	A	A1TA	POPTR_0004s01880	POPTR_0004s01880 (9)	scaffold_4:1158334-1158739(+) (11)	NA	O80690	Beta-glucosidase 46	AT1G61820.1	beta glucosidase 46 	LOC_Os04g43360.1	"Os4bglu14 - monolignol beta-glucoside homologue without catalytic acid/base, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.8046.1.S1_s_at	A	A2TS	POPTR_0001s33290	POPTR_0001s33290 (9)//POPTR_0017s09590 (9)	scaffold_1:31477260-31477292(-) (9)//scaffold_17:8214950-8214982(-) (9)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os09g33450.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.8049.1.S1_s_at	A	A1TS	POPTR_0004s01650	POPTR_0004s01650 (11)	scaffold_4:1000755-1001068(-) (11)	NA	NA	NA	AT1G11655.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.805.1.S1_at	A	A1TS	POPTR_0005s04090	POPTR_0005s04090 (11)	scaffold_5:2706546-2706804(+) (11)	NA	Q9ZVL6	"UPF0603 protein At1g54780, chloroplastic"	AT1G54780.1	thylakoid lumen 18.3 kDa protein 	LOC_Os05g33280.1	"thylakoid lumen protein, putative, expressed"	Medtr1g099000.1	Protein of unknown function DUF477 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.805.2.S1_a_at	A	A1TS	POPTR_0005s04090	POPTR_0005s04090 (11)	scaffold_5:2705103-2705144(+) (11)	NA	Q9ZVL6	"UPF0603 protein At1g54780, chloroplastic"	AT1G54780.1	thylakoid lumen 18.3 kDa protein 	LOC_Os05g33280.1	"thylakoid lumen protein, putative, expressed"	Medtr1g099000.1	Protein of unknown function DUF477 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8052.1.S1_at	A	A1MS	POPTR_0005s28170	POPTR_0005s28170 (11)	scaffold_5:25520799-25521307(-) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT1G21080.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os08g41110.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.8053.1.S1_at	A	A1TS	POPTR_0004s06420	POPTR_0004s06420 (11)	scaffold_4:5170877-5171250(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr4g165410.1	"LRR receptor-like serine/threonine-protein kinase FLS2 precursor, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.8054.1.S1_at	A	A1TS	POPTR_0009s10630	POPTR_0009s10630 (9)	scaffold_9:9092876-9093298(-) (9)	NA	NA	NA	AT2G15695.1	"Protein of unknown function DUF829, transmembrane 53 "	LOC_Os11g40070.1	expressed protein	Medtr4g129420.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8055.1.S1_at	A	A1TS	POPTR_0018s11310	POPTR_0018s11310 (11)	scaffold_18:12117227-12117609(+) (11)	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
Ptp.8056.1.S1_at	A	A1TS	POPTR_0001s31800	POPTR_0001s31800 (9)	scaffold_1:30164875-30165364(-) (9)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os02g36340.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr4g120840.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
Ptp.8056.1.S1_s_at	A	A1TS	POPTR_0001s31800	POPTR_0001s31800 (11)	scaffold_1:30164903-30165276(-) (11)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os02g36340.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr4g120840.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
Ptp.8059.1.S1_a_at	A	A1TS	POPTR_0001s07070	POPTR_0001s07070 (11)	scaffold_1:5387398-5389210(+) (11)	NA	P50846	KHG/KDPG aldolase	NA	NA	LOC_Os07g12160.1	"KHG/KDPG aldolase, putative, expressed"	Medtr7g009060.1	KDPG and KHG aldolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.8062.1.S1_s_at	A	A1TS	POPTR_0001s33340	POPTR_0001s33340 (11)	scaffold_1:31533996-31534404(+) (11)	NA	Q7G8Y5	Glutaredoxin-C1	AT3G02000.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g027340.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.8066.1.S1_s_at	A	A1TS	POPTR_0010s15280	POPTR_0010s15280 (11)	scaffold_10:14611887-14612330(+) (11)	NA	NA	NA	AT5G49450.1	basic leucine-zipper 1 	LOC_Os02g03960.1	"CPuORF1 - conserved peptide uORF-containing transcript, expressed"	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.8067.1.S1_at	A	A1TS	POPTR_0006s25700	POPTR_0006s25700 (10)	scaffold_6:24078238-24079578(+) (10)	NA	Q5ZL00	Uncharacterized protein KIAA0090 homolog	AT5G11560.1	catalytics 	LOC_Os05g14170.1	expressed protein	AC225517_26.1	Quinonprotein alcohol dehydrogenase-like AC225517.6 112314-118182 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8069.1.S1_at	A	A1TS	POPTR_0005s19010	POPTR_0005s19010 (9)	scaffold_5:17582805-17583263(+) (9)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT2G14820.1	Phototropic-responsive NPH3 family protein 	LOC_Os12g39380.1	"BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr5g015880.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.807.1.S1_at	A	A1TS	POPTR_0013s14040	POPTR_0013s14040 (10)	scaffold_13:14365130-14365585(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8070.1.A1_at	A	A1TS	POPTR_0004s23170	POPTR_0004s23170 (11)	scaffold_4:21956928-21957479(+) (11)	NA	Q94CC0	Uncharacterized protein At5g49945	AT4G24330.1	Protein of unknown function (DUF1682) 	LOC_Os05g35710.2	"coiled-coil domain-containing protein 47 precursor, putative, expressed"	Medtr2g005700.1	Protein of unknown function DUF1682 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8073.1.A1_s_at	A	A1TS	POPTR_0004s21440	POPTR_0004s21440 (9)	scaffold_4:20570275-20570549(-) (9)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.8077.1.S1_at	A	A1TS	POPTR_0017s07210	POPTR_0017s07210 (11)	scaffold_17:5607452-5607703(-) (11)	NA	NA	NA	AT5G64360.4	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g31940.1	"dnaJ domain containing protein, expressed"	Medtr4g121050.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.8084.1.A1_s_at	A	A1TS	POPTR_0001s32030	POPTR_0001s32030 (11)	scaffold_1:30457627-30458127(-) (11)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.8086.1.S1_at	A	A1TS	POPTR_0001s00840	POPTR_0001s00840 (10)	scaffold_1:697770-698810(+) (10)	NA	NA	NA	AT4G25170.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os02g44010.2	expressed protein	Medtr7g040860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8089.1.S1_at	A	A1MS	POPTR_0012s14890	POPTR_0012s14890 (10)	scaffold_12:14589913-14590228(+) (11)	NA	Q5S2C4	Protein NAP1	AT2G35110.1	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.809.1.A1_at	A	A1MS	POPTR_0003s21680	POPTR_0003s21680 (9)	scaffold_3:19735102-19735276(-) (9)	NA	NA	NA	AT5G19900.1	"PRLI-interacting factor, putative "	LOC_Os02g58570.1	"PRLI-interacting factor A, putative, expressed"	Medtr1g146630.1	"PRLI-interacting factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8090.1.A1_s_at	A	A1TS	POPTR_0010s20070	POPTR_0010s20070 (11)	scaffold_10:17814825-17814984(-) (11)	NA	P44797	Adenylosuccinate lyase	AT1G36280.1	L-Aspartase-like family protein 	LOC_Os03g19930.1	"adenylosuccinate lyase, putative, expressed"	Medtr7g111520.1	Fumarate lyase; Adenylosuccinate lyase 	GO:0044281|small molecule metabolic process||GO:0006188|IMP biosynthetic process	"GO:0004018|""N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"""	NA
Ptp.8092.1.S1_at	A	A1MS	POPTR_0001s21780	POPTR_0001s21780 (10)	scaffold_1:20276161-20279940(+) (10)	NA	NA	NA	AT1G71240.2	Plant protein of unknown function (DUF639) 	LOC_Os01g64870.1	expressed protein	Medtr2g007450.1	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8096.1.S1_s_at	A	A1TS	POPTR_0014s08250	POPTR_0014s08250 (11)	scaffold_14:6130924-6130966(-) (11)	NA	NA	NA	AT2G46040.1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein 	LOC_Os04g08410.1	"ELM2 domain containing protein, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.81.1.S1_at	A	A1TS	POPTR_0005s17870	POPTR_0005s17870 (9)	scaffold_5:15686889-15687432(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8100.1.S1_a_at	A	A1TS	POPTR_0007s06990	POPTR_0007s06990 (11)	scaffold_7:5338461-5338949(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8105.1.S1_at	A	A1TS	POPTR_0010s24220	POPTR_0010s24220 (9)	scaffold_10:20532630-20533148(+) (9)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os11g37070.1	expressed protein	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8106.1.S1_at	A	A1TS	POPTR_0002s07930	POPTR_0002s07930 (11)	scaffold_2:5475490-5475887(+) (11)	NA	Q2LAE1	Histone-lysine N-methyltransferase ASHH2	AT1G77300.1	histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) 	LOC_Os02g34850.1	"histone-lysine N-methyltransferase ASHH2, putative, expressed"	Medtr1g124410.1	Nuclear protein SET; SET-related region; AWS 	NA	GO:0008270|zinc ion binding	NA
Ptp.8107.1.S1_at	A	A1TS	POPTR_0005s27830	POPTR_0005s27830 (10)	scaffold_5:25313683-25314405(+) (10)	NA	P29057	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g094670.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
Ptp.811.1.A1_at	A	A1TS	POPTR_0003s16950	POPTR_0003s16950 (9)	scaffold_3:16433644-16433936(-) (9)	NA	Q9C5U1	Histidine kinase 3	AT1G27320.1	histidine kinase 3 	LOC_Os01g69920.1	"histidine kinase, putative, expressed"	Medtr3g104030.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.8110.1.S1_at	A	A1TS	POPTR_0009s08290	POPTR_0009s08290 (11)	scaffold_9:7630706-7631219(-) (11)	NA	Q9FME8	Oligopeptide transporter 4	AT5G64410.1	oligopeptide transporter 4 	LOC_Os01g43940.1	"oligopeptide transporter, putative"	Medtr2g010070.1	"Peptidase aspartic, active site; Oligopeptide transporter OPT superfamily "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8111.1.S1_at	A	A1MS	POPTR_0006s10560	POPTR_0006s10560 (9)	scaffold_6:7905372-7905635(-) (9)	NA	Q6T486	Probable E3 ubiquitin-protein ligase rbrA	AT5G60250.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os11g01240.1	IBR domain containing protein	Medtr4g080390.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.8113.2.S1_a_at	A	A2TS	POPTR_0005s03550	POPTR_0005s03550 (11)//POPTR_0005s03560 (11)	scaffold_5:2382797-2383041(+) (11)//scaffold_5:2399346-2399590(+) (11)	POPTR_0013s02300 (8)	P38415	Lipoxygenase A	AT1G55020.1	lipoxygenase 1 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr7g139190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.8115.1.S1_s_at	A	A1TS	POPTR_0001s18750	POPTR_0001s18750 (11)	scaffold_1:15892255-15893228(+) (11)	NA	Q8HY87	Zinc phosphodiesterase ELAC protein 2	AT3G16260.1	tRNAse Z4 	LOC_Os01g13150.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr2g122460.1	"Hydrolase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8116.1.S1_at	A	A1TS	POPTR_0008s13910	POPTR_0008s13910 (10)	scaffold_8:9178212-9178652(+) (10)	NA	Q9SIS3	65-kDa microtubule-associated protein 6	AT2G01910.2	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os09g27700.2	"microtubule associated protein, putative, expressed"	Medtr1g046560.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8118.3.S1_at	A	A1TS	POPTR_0018s11530	POPTR_0018s11530 (11)	scaffold_18:12238501-12239968(-) (11)	NA	Q8RWS9	Probable cyclic nucleotide-gated ion channel 5	AT5G57940.2	cyclic nucleotide gated channel 5 	LOC_Os04g55080.1	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.812.1.S1_s_at	A	A1TS	POPTR_0004s18240	POPTR_0004s18240 (11)	scaffold_4:18205520-18205994(-) (11)	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os04g16450.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.8120.1.A1_at	A	A1MS	POPTR_0001s10060	POPTR_0001s10060 (11)	scaffold_1:7788678-7788835(-) (11)	NA	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
Ptp.8122.1.S1_at	A	A1TS	POPTR_0001s33500	POPTR_0001s33500 (10)	scaffold_1:31699913-31701056(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8124.1.S1_at	A	A1MS	POPTR_0017s05470	POPTR_0017s05470 (9)	scaffold_17:4330488-4331052(+) (9)	NA	Q9LTR2	"Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic"	AT3G20320.1	trigalactosyldiacylglycerol2 	LOC_Os01g74280.1	"TGD2, putative, expressed"	Medtr5g095460.1	Mammalian cell entry related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8126.1.S1_s_at	A	A1TS	POPTR_0007s00690	POPTR_0007s00690 (11)	scaffold_7:349920-350333(+) (11)	NA	Q39173	Probable NADP-dependent oxidoreductase P2	AT5G16990.1	Zinc-binding dehydrogenase family protein 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.8129.1.S1_at	A	A1TA	POPTR_0007s13780	POPTR_0007s13780 (9)	scaffold_7:13825005-13825240(+) (9)	NA	Q8VYZ3	Probable pectinesterase 53	AT5G19730.1	Pectin lyase-like superfamily protein 	LOC_Os01g53990.1	"pectinesterase, putative, expressed"	Medtr4g160050.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
Ptp.8131.1.S1_s_at	A	A1TS	POPTR_0010s08950	POPTR_0010s08950 (11)	scaffold_10:9739053-9739527(-) (11)	NA	Q9SUL7	CBL-interacting serine/threonine-protein kinase 4	AT4G14580.1	CBL-interacting protein kinase 4 	LOC_Os03g43440.1	"CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	AC233668_30.1	"NAF; Serine/threonine protein kinase, active site AC233668.2 124906-121950 E EGN_Mt090430 200"	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.8132.1.A1_at	A	A1TS	POPTR_0005s08370	POPTR_0005s08370 (10)	scaffold_5:5786547-5787383(+) (10)	NA	Q39237	Transcription factor TGA1	AT5G65210.5	bZIP transcription factor family protein 	LOC_Os04g54474.3	"transcription factor, putative, expressed"	Medtr3g100900.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.8133.1.S1_s_at	A	A1TS	POPTR_0002s02010	POPTR_0002s02010 (11)	scaffold_2:1077846-1078263(+) (11)	NA	O65351	Subtilisin-like protease	AT1G20160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30458.1	"subtilisin-like protease, putative, expressed"	Medtr3g139400.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.8134.2.S1_a_at	A	A1TS	POPTR_0018s11390	POPTR_0018s11390 (10)	scaffold_18:12156992-12157068(-) (10)	NA	Q9FDX1	F-box protein SKIP1	AT5G57900.1	SKP1 interacting partner 1 	LOC_Os08g16840.1	"OsFBL45 - F-box domain and LRR containing protein, expressed"	Medtr8g145080.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.8134.3.S1_a_at	A	A1TS	POPTR_0018s11390	POPTR_0018s11390 (11)	scaffold_18:12156504-12156990(-) (11)	NA	Q9FDX1	F-box protein SKIP1	AT5G57900.1	SKP1 interacting partner 1 	LOC_Os08g16840.1	"OsFBL45 - F-box domain and LRR containing protein, expressed"	Medtr8g145080.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.8135.1.A1_at	A	A1TS	POPTR_0013s13440	POPTR_0013s13440 (11)	scaffold_13:13922736-13923972(+) (11)	NA	Q8GY87	Probable ubiquitin-conjugating enzyme E2 26	AT1G53025.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.8135.2.S1_at	A	A1TS	POPTR_0013s13440	POPTR_0013s13440 (9)	scaffold_13:13921723-13922500(+) (9)	NA	Q8GY87	Probable ubiquitin-conjugating enzyme E2 26	AT1G53025.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.8137.1.A1_at	A	A1TS	POPTR_0009s01500	POPTR_0009s01500 (11)	scaffold_9:1895374-1895884(-) (11)	NA	O49840	"Protein kinase 2B, chloroplastic"	AT3G57120.1	Protein kinase superfamily protein 	LOC_Os02g57440.1	"LYK8, putative, expressed"	AC235487_29.1	Protein kinase-like AC235487.1 132912-131578 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.814.1.S1_at	A	A1TS	POPTR_0006s21590	POPTR_0006s21590 (9)	scaffold_6:20635641-20635922(-) (9)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G06470.1	Glutaredoxin family protein 	LOC_Os03g44650.1	"glutaredoxin, putative, expressed"	Medtr1g112130.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.8141.1.S1_at	A	A1TS	POPTR_0007s07660	POPTR_0007s07660 (11)	scaffold_7:6026693-6028663(+) (11)	NA	P83877	Thioredoxin-like protein 4A	AT5G08290.1	"mRNA splicing factor, thioredoxin-like U5 snRNP "	LOC_Os07g10256.1	"mitosis protein dim1, putative, expressed"	Medtr1g065930.1	Thioredoxin domain 2 	GO:0007067|mitosis	NA	GO:0005681|spliceosomal complex
Ptp.8141.1.S1_s_at	A	A1TS	POPTR_0007s07660	POPTR_0007s07660 (11)	scaffold_7:6028669-6028980(+) (11)	NA	P83877	Thioredoxin-like protein 4A	AT5G08290.1	"mRNA splicing factor, thioredoxin-like U5 snRNP "	LOC_Os07g10256.1	"mitosis protein dim1, putative, expressed"	Medtr1g065930.1	Thioredoxin domain 2 	GO:0007067|mitosis	NA	GO:0005681|spliceosomal complex
Ptp.8142.1.A1_at	A	A1TS	POPTR_0002s24600	POPTR_0002s24600 (9)	scaffold_2:21933288-21934607(+) (9)	NA	Q6GL77	UBX domain-containing protein 1	AT1G04850.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os02g30180.1	"ZOS2-07 - C2H2 zinc finger protein, expressed"	Medtr4g133680.1	"Ubiquitin-associated; PUG; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8143.1.S1_s_at	A	A10TS	POPTR_0011s10120	POPTR_0011s10320 (11)//POPTR_0011s10260 (11)//POPTR_0011s10140 (11)//POPTR_0011s10120 (11)//POPTR_0011s10180 (11)//POPTR_0011s10280 (11)//POPTR_0011s10300 (11)//POPTR_0011s10220 (10)//POPTR_0011s10210 (10)//POPTR_0011s10150 (10)	scaffold_11:12628319-12628549(+) (11)//scaffold_11:12646872-12647102(+) (11)//scaffold_11:12657992-12658222(+) (10)//scaffold_11:12674517-12674747(+) (11)//scaffold_11:12681810-12686608(+) (11)//scaffold_11:12686378-12686602(+) (10)//scaffold_11:12721704-12721934(+) (11)//scaffold_11:12735951-12736181(+) (11)//scaffold_11:12742520-12742750(+) (11)//scaffold_11:12759020-12759250(+) (11)	NA	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43774.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.815.1.A1_at	A	A1TS	POPTR_0015s13760	POPTR_0015s13760 (11)	scaffold_15:13558781-13559394(-) (11)	NA	Q9FNZ2	Zinc finger CCCH domain-containing protein 48	AT4G25440.1	zinc finger WD40 repeat protein 1 	LOC_Os02g45480.1	"nucleic acid binding protein, putative, expressed"	AC235567_67.1	"Zinc finger, CCCH-type AC235567.1 251711-249065 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.816.1.S1_s_at	A	A1TS	POPTR_0007s12280	POPTR_0007s12280 (11)	scaffold_7:12598238-12598730(-) (11)	NA	Q09463	RING finger protein 5	AT2G23780.1	RING/U-box superfamily protein 	LOC_Os12g43930.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.817.1.S1_a_at	A	A1TS	POPTR_0001s33950	POPTR_0001s33950 (11)	scaffold_1:32110469-32111743(-) (11)	NA	Q9FKS0	"Uridine kinase-like protein 1, chloroplastic"	AT5G40870.1	uridine kinase/uracil phosphoribosyltransferase 1 	LOC_Os09g32820.1	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.818.1.S1_at	A	A1TS	POPTR_0003s21240	POPTR_0003s21240 (11)	scaffold_3:19487042-19487170(+) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT3G13570.1	SC35-like splicing factor 30A 	LOC_Os07g43950.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.819.1.S1_s_at	A	A1TS	POPTR_0014s08960	POPTR_0014s08960 (11)	scaffold_14:6621925-6623952(-) (11)	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G01150.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os06g15400.1	expressed protein	Medtr7g143530.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.822.1.S1_at	A	A1TS	POPTR_0006s10040	POPTR_0006s10040 (11)	scaffold_6:7457335-7457610(-) (11)	NA	Q9XF88	"Chlorophyll a-b binding protein CP29.2, chloroplastic"	AT3G08940.2	light harvesting complex photosystem II 	LOC_Os07g37240.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr4g012910.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.822.1.S1_x_at	A	A1TS	POPTR_0006s10040	POPTR_0006s10040 (11)	scaffold_6:7457335-7457908(-) (11)	NA	Q9XF88	"Chlorophyll a-b binding protein CP29.2, chloroplastic"	AT3G08940.2	light harvesting complex photosystem II 	LOC_Os07g37240.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr4g012910.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.824.1.S1_x_at	A	A1TS	POPTR_0008s07450	POPTR_0008s07450 (11)	scaffold_8:4575109-4575654(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT4G14270.1	Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. 	LOC_Os03g23010.1	expressed protein	Medtr5g091120.1	"poly-binding protein C-terminal interacting protein 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.825.1.S1_at	A	A1TS	POPTR_0006s12060	POPTR_0006s12060 (11)	scaffold_6:9220463-9221274(+) (11)	NA	Q93ZG7	DEAD-box ATP-dependent RNA helicase 38	AT3G53110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g06220.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	CU179634_5.1	ATP-requiring DNA helicase RecQ; ; CU179634.6 19026-13362 H EGN_Mt090430 200	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.825.2.S1_at	A	A1TS	POPTR_0006s12060	POPTR_0006s12060 (9)	scaffold_6:9215802-9216643(+) (9)	NA	Q93ZG7	DEAD-box ATP-dependent RNA helicase 38	AT3G53110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g06220.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	CU179634_5.1	ATP-requiring DNA helicase RecQ; ; CU179634.6 19026-13362 H EGN_Mt090430 200	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.827.1.A1_at	A	A1TS	POPTR_0005s11300	POPTR_0005s11300 (11)	scaffold_5:8184565-8184842(-) (11)	NA	B8GPV3	3-dehydroquinate synthase	AT5G66120.2	"3-dehydroquinate synthase, putative "	LOC_Os09g36800.1	"3-dehydroquinate synthase, putative, expressed"	Medtr5g022480.1	3-dehydroquinate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003856|3-dehydroquinate synthase activity	NA
Ptp.829.1.A1_at	A	A1TS	POPTR_0009s14090	POPTR_0009s14090 (11)	scaffold_9:11113365-11113466(+) (11)	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16990.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.83.2.S1_s_at	A	A1TS	POPTR_0005s21740	POPTR_0005s21740 (11)	scaffold_5:20845698-20845735(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.831.1.S1_s_at	A	A1TS	POPTR_0019s12110	POPTR_0019s12110 (11)	scaffold_19:13252504-13253097(+) (11)	NA	Q8LPR5	Transcription factor TCP4	AT3G15030.3	TCP family transcription factor 4 	LOC_Os01g11550.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.834.1.A1_at	A	A1TS	POPTR_0010s24640	POPTR_0010s24640 (11)	scaffold_10:20742813-20743313(-) (11)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.834.2.S1_at	A	A1MA	POPTR_0010s24640	POPTR_0010s24640 (9)	scaffold_10:20744125-20745190(+) (10)	POPTR_0008s02000 (6)//POPTR_0341s00210 (6)	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.834.3.A1_a_at	A	A1TS	POPTR_0010s24640	POPTR_0010s24640 (10)	scaffold_10:20745161-20745194(-) (10)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.834.3.A1_at	A	A1MS	POPTR_0010s24640	POPTR_0010s24640 (9)	scaffold_10:20744845-20745329(-) (9)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.835.1.S1_s_at	A	A1TS	POPTR_0001s18680	POPTR_0001s18680 (11)	scaffold_1:15820263-15820478(+) (11)	NA	Q9ZSY8	Auxin-responsive protein IAA27	AT4G29080.1	phytochrome-associated protein 2 	LOC_Os01g13030.2	"OsIAA3 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122570.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.836.1.S1_s_at	A	A1TS	POPTR_0004s22690	POPTR_0004s22690 (11)	scaffold_4:21548407-21549747(-) (11)	NA	NA	NA	AT5G22875.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os04g08330.1	hypothetical protein	Medtr4g076090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.838.1.A1_at	A	A1TS	POPTR_0006s27430	POPTR_0006s27430 (9)	scaffold_6:25340104-25340611(+) (9)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.841.1.A1_at	A	A1TS	POPTR_0009s03050	POPTR_0009s03050 (11)	scaffold_9:3760724-3761783(-) (11)	NA	Q499R4	"YrdC domain-containing protein, mitochondrial"	AT5G60590.2	DHBP synthase RibB-like alpha/beta domain 	LOC_Os03g10450.1	"Sua5/YciO/YrdC/YwlC family protein, putative, expressed"	Medtr4g081630.1	"SUA5/yciO/yrdC, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.846.1.A1_at	A	A1TS	POPTR_0001s40480	POPTR_0001s40480 (10)	scaffold_1:39922309-39922600(-) (10)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14420.2	Aldolase-type TIM barrel family protein 	LOC_Os03g57220.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.847.1.A1_at	A	A1TS	POPTR_0005s16450	POPTR_0005s16450 (10)	scaffold_5:13210542-13210937(+) (10)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os10g21940.1	expressed protein	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.848.1.S1_at	A	A1TS	POPTR_0017s02770	POPTR_0017s02770 (11)	scaffold_17:1975125-1975624(+) (11)	NA	P51118	Glutamine synthetase cytosolic isozyme 1	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.848.1.S1_x_at	A	A1TS	POPTR_0017s02770	POPTR_0017s02770 (10)	scaffold_17:1975125-1975659(+) (10)	NA	P51118	Glutamine synthetase cytosolic isozyme 1	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.849.1.S1_at	A	A2TS	POPTR_0014s00670	POPTR_0014s00670 (11)//POPTR_0014s01090 (11)	scaffold_14:624810-625897(+) (11)//scaffold_14:1011388-1012483(-) (11)	NA	Q9LHE5	Mitochondrial import receptor subunit TOM40 homolog 1	AT3G20000.1	translocase of the outer mitochondrial membrane 40 	LOC_Os03g20750.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr4g156410.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.85.1.A1_s_at	A	A1TS	POPTR_0001s06590	POPTR_0001s06590 (10)	scaffold_1:5070317-5072601(+) (10)	NA	Q9M7X9	"Thioredoxin-like protein CITRX, chloroplastic"	AT3G06730.1	Thioredoxin z 	LOC_Os08g29110.1	"thioredoxin, putative, expressed"	Medtr3g005810.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.850.1.S1_at	A	A1MS	POPTR_0006s06110	POPTR_0006s06110 (9)	scaffold_6:4347711-4348164(-) (9)	NA	Q3E9A0	"Probable anion transporter 6, chloroplastic"	AT5G20380.1	phosphate transporter 4;5 	LOC_Os09g38410.1	"sialin, putative, expressed"	Medtr8g122090.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.853.1.S1_at	A	A1TS	POPTR_0022s00530	POPTR_0022s00530 (10)	scaffold_22:207944-208352(-) (10)	NA	Q02028	"Stromal 70 kDa heat shock-related protein, chloroplastic"	AT5G49910.1	chloroplast heat shock protein 70-2 	LOC_Os12g14070.1	"DnaK family protein, putative, expressed"	Medtr2g005480.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.858.1.S1_at	A	A1TS	POPTR_0005s08050	POPTR_0005s08050 (11)	scaffold_5:5540311-5541254(-) (11)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
Ptp.858.1.S1_x_at	A	A1TS	POPTR_0005s08050	POPTR_0005s08050 (11)	scaffold_5:5540311-5541254(-) (11)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
Ptp.860.1.S1_s_at	A	A1TS	POPTR_0018s02140	POPTR_0018s02140 (10)	scaffold_18:1902104-1902447(-) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr3g137750.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.863.1.S1_s_at	A	A1TS	POPTR_0010s20020	POPTR_0010s20020 (11)	scaffold_10:17769145-17769421(+) (11)	NA	NA	NA	AT2G39950.1	unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). 	LOC_Os07g01060.1	expressed protein	Medtr5g089220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.864.1.S1_s_at	A	A1TS	POPTR_0014s13430	POPTR_0014s13430 (11)	scaffold_14:9884731-9884797(-) (11)	NA	NA	NA	AT4G02920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g05140.2	expressed protein	Medtr1g111640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.864.2.S1_at	A	A1TA	POPTR_0004s03870	POPTR_0004s03870 (10)	scaffold_4:2752083-2752315(+) (10)	NA	P43311	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os01g58100.1	"polyphenol oxidase, putative"	Medtr4g042530.1	Di-copper centre-containing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.864.3.S1_at	A	A1TS	POPTR_0014s13430	POPTR_0014s13430 (11)	scaffold_14:9884419-9884453(-) (11)	NA	NA	NA	AT4G02920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g05140.2	expressed protein	Medtr1g111640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.864.3.S1_s_at	A	A1TS	POPTR_0014s13430	POPTR_0014s13430 (11)	scaffold_14:9884275-9884316(-) (11)	NA	NA	NA	AT4G02920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g05140.2	expressed protein	Medtr1g111640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.866.1.S1_s_at	A	A1TS	POPTR_0007s01110	POPTR_0007s01110 (11)	scaffold_7:602631-602928(-) (11)	NA	Q9FE67	Ethylene-responsive transcription factor 9	AT5G44210.1	erf domain protein 9 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.868.1.S1_s_at	A	A1TS	POPTR_0008s05950	POPTR_0008s05950 (11)	scaffold_8:3509515-3509778(+) (11)	NA	P49598	Protein phosphatase 2C 37	AT3G11410.1	protein phosphatase 2CA 	LOC_Os01g62760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.869.2.S1_a_at	A	A1TS	POPTR_0015s11070	POPTR_0015s11070 (11)	scaffold_15:11745272-11745694(+) (11)	NA	Q9SMN1	"Uncharacterized protein At3g48680, mitochondrial"	AT3G48680.1	gamma carbonic anhydrase-like 2 	LOC_Os02g30460.1	"uncharacterized protein MJ0304, putative, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
Ptp.872.1.S1_at	A	A1TS	POPTR_0016s14310	POPTR_0016s14310 (11)	scaffold_16:13560216-13560980(-) (11)	NA	Q9ZUC1	"Quinone oxidoreductase-like protein At1g23740, chloroplastic"	AT1G23740.1	"Oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os08g29170.1	"dehydrogenase, putative, expressed"	Medtr6g012770.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.873.2.S1_a_at	A	A1TS	POPTR_0001s41780	POPTR_0001s41780 (11)	scaffold_1:41485686-41485941(-) (11)	NA	P27489	"Chlorophyll a-b binding protein 13, chloroplastic"	AT5G54270.1	light-harvesting chlorophyll B-binding protein 3 	LOC_Os07g37550.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g095410.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.873.2.S1_s_at	A	A2TS	POPTR_0001s41780	POPTR_0011s12680 (11)//POPTR_0001s41780 (11)	scaffold_1:41486009-41486112(-) (11)//scaffold_11:15393400-15393503(-) (11)	NA	P27489	"Chlorophyll a-b binding protein 13, chloroplastic"	AT5G54270.1	light-harvesting chlorophyll B-binding protein 3 	LOC_Os07g37550.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g095410.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.873.2.S1_x_at	A	A1TS	POPTR_0001s41780	POPTR_0001s41780 (11)	scaffold_1:41485617-41485945(-) (11)	NA	P27489	"Chlorophyll a-b binding protein 13, chloroplastic"	AT5G54270.1	light-harvesting chlorophyll B-binding protein 3 	LOC_Os07g37550.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g095410.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.874.1.S1_at	A	A1TS	POPTR_0008s13910	POPTR_0008s13910 (11)	scaffold_8:9183839-9184585(+) (11)	NA	Q9SIS3	65-kDa microtubule-associated protein 6	AT2G01910.2	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os09g27700.2	"microtubule associated protein, putative, expressed"	Medtr1g046560.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.875.1.A1_at	A	A1TS	POPTR_0016s11610	POPTR_0016s11610 (11)	scaffold_16:10842160-10842747(+) (11)	NA	P46275	"Fructose-1,6-bisphosphatase, chloroplastic"	AT3G54050.2	high cyclic electron flow 1 	LOC_Os03g16050.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
Ptp.878.1.S1_at	A	A1TS	POPTR_0002s17130	POPTR_0002s17130 (11)	scaffold_2:12922647-12923535(-) (11)	NA	Q9M367	Beclin-1-like protein	AT3G61710.1	AUTOPHAGY 6 	LOC_Os01g48920.1	"beclin-1, putative, expressed"	Medtr3g020350.2	Autophagy protein Apg6 	GO:0006914|autophagy	NA	NA
Ptp.879.1.A1_at	A	A1TS	POPTR_0010s22660	POPTR_0010s22660 (11)	scaffold_10:19485693-19485987(+) (11)	NA	NA	NA	AT4G25030.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g43060.1	expressed protein	Medtr1g121550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.880.1.A1_at	A	A1MS	POPTR_0005s12700	POPTR_0005s12700 (11)	scaffold_5:9444234-9444897(-) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT4G36690.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.880.2.A1_a_at	A	A1TS	POPTR_0005s12700	POPTR_0005s12700 (11)	scaffold_5:9444689-9445446(-) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT4G36690.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.881.1.A1_s_at	A	A1TS	POPTR_0005s11500	POPTR_0005s11500 (11)	scaffold_5:8310747-8311078(-) (11)	NA	P10933	"Ferredoxin--NADP reductase, leaf isozyme, chloroplastic"	AT5G66190.1	ferredoxin-NADP(+)-oxidoreductase 1 	LOC_Os02g01340.2	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr5g022240.1	Oxidoreductase FAD/NAD(P)-binding 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.885.1.S1_s_at	A	A1TS	POPTR_0005s12510	POPTR_0005s12510 (11)	scaffold_5:9278291-9278524(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.886.1.S1_s_at	A	A1TS	POPTR_0001s37200	POPTR_0001s37200 (11)	scaffold_1:36163685-36163960(+) (11)	NA	NA	NA	AT5G55530.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os03g09840.2	"C2 domain containing protein, putative, expressed"	Medtr3g076960.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.89.1.S1_at	A	A1TS	POPTR_0004s23900	POPTR_0004s23900 (10)	scaffold_4:22535756-22535975(-) (10)	NA	NA	NA	AT1G14450.1	NADH dehydrogenase (ubiquinone)s 	LOC_Os02g35610.1	expressed protein	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity	GO:0005739|mitochondrion
Ptp.890.1.S1_at	A	A1TS	POPTR_0014s09220	POPTR_0014s09220 (11)	scaffold_14:6856739-6857366(-) (11)	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT4G01050.1	thylakoid rhodanese-like 	LOC_Os02g15750.1	expressed protein	AC233680_8.1	"coded for by A. thaliana cDNA T22670; coded for by A. thaliana cDNA T44720; coded for by A. thaliana cDNA T41991; coded for by A. thaliana cDNA AA042110, putative AC233680.1 46729-45900 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.893.1.S1_s_at	A	A1TS	POPTR_0009s02440	POPTR_0009s02440 (11)	scaffold_9:3195549-3196019(-) (11)	NA	NA	NA	AT5G22430.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr2g107610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.894.1.S1_at	A	A1MS	POPTR_0022s00450	POPTR_0022s00450 (9)	scaffold_22:154722-154987(-) (9)	NA	Q8GWR3	KH domain-containing protein At1g09660	AT1G09660.1	RNA-binding KH domain-containing protein 	LOC_Os01g66300.1	"KH domain containing protein, putative, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding	NA
Ptp.894.2.S1_s_at	A	A1TS	POPTR_0022s00450	POPTR_0022s00450 (11)	scaffold_22:151337-151870(-) (11)	NA	Q8GWR3	KH domain-containing protein At1g09660	AT1G09660.1	RNA-binding KH domain-containing protein 	LOC_Os01g66300.1	"KH domain containing protein, putative, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding	NA
Ptp.896.1.A1_at	A	A1TS	POPTR_0014s04540	POPTR_0014s04540 (9)	scaffold_14:3504031-3504265(+) (9)	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	Medtr5g006070.1	BTB/POZ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.897.1.S1_at	A	A1MS	POPTR_0005s02730	POPTR_0005s02730 (11)	scaffold_5:1740320-1740744(-) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT3G50700.1	indeterminate(ID)-domain 2 	LOC_Os02g31890.1	ZOS2-08 - C2H2 zinc finger protein	Medtr7g130150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.9.1.S1_at	A	A1TS	POPTR_0003s06830	POPTR_0003s06830 (11)	scaffold_3:8367255-8367653(-) (11)	NA	O35723	DnaJ homolog subfamily B member 3	AT3G14200.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g54130.2	"heat shock protein DnaJ, putative, expressed"	Medtr8g025850.2	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.90.1.S1_s_at	A	A1TS	POPTR_0001s34770	POPTR_0001s34770 (11)	scaffold_1:33014483-33014829(+) (11)	NA	Q16706	Alpha-mannosidase 2	AT5G14950.1	golgi alpha-mannosidase II 	LOC_Os06g13650.2	"alpha-mannosidase 2, putative, expressed"	Medtr6g009490.1	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0005975|carbohydrate metabolic process	GO:0004559|alpha-mannosidase activity||GO:0008270|zinc ion binding	NA
Ptp.900.1.A1_s_at	A	A1TS	POPTR_0018s11300	POPTR_0018s11300 (11)	scaffold_18:12103519-12104482(-) (11)	NA	Q8YNE3	Translation initiation factor IF-3	AT2G24060.1	Translation initiation factor 3 protein 	LOC_Os02g55120.1	"translation initiation factor IF-3, putative, expressed"	Medtr8g145010.1	Initiation factor 3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.904.1.A1_s_at	A	A1TS	POPTR_0014s01470	POPTR_0014s01470 (11)	scaffold_14:1409110-1409608(-) (11)	NA	Q9FZI8	Lecithin-cholesterol acyltransferase-like 1	AT1G27480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g52010.1	"lecithin cholesterol acyltransferase, putative, expressed"	Medtr2g091450.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
Ptp.908.1.S1_at	A	A1TS	POPTR_0008s07680	POPTR_0008s07680 (9)	scaffold_8:4700513-4700902(-) (9)	NA	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.909.1.A1_s_at	A	A1TS	POPTR_0012s08100	POPTR_0012s08100 (11)	scaffold_12:9149168-9149425(+) (11)	NA	Q8GYT9	E3 ubiquitin-protein ligase SIS3	AT3G47990.1	SUGAR-INSENSITIVE 3 	LOC_Os05g05280.1	"zinc finger family protein, putative, expressed"	Medtr8g125420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.91.1.S1_at	A	A2TS	POPTR_0001s16250	POPTR_0001s16250 (11)//POPTR_0214s00200 (11)	scaffold_1:13070565-13070862(+) (11)//scaffold_214:10252-10549(+) (11)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.911.1.S1_at	A	A1TS	POPTR_0001s43020	POPTR_0001s43020 (11)	scaffold_1:43077475-43077987(-) (11)	NA	NA	NA	AT3G12920.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os03g46570.1	"protein binding protein, putative, expressed"	Medtr2g088530.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.912.3.A1_a_at	A	A1TS	POPTR_0013s10250	POPTR_0013s10250 (11)	scaffold_13:10266246-10266431(-) (11)	NA	Q949U7	"Peroxiredoxin-2E, chloroplastic"	AT3G52960.1	Thioredoxin superfamily protein 	LOC_Os02g09940.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.913.1.S1_a_at	A	A1TS	POPTR_0004s12380	POPTR_0004s12380 (9)	scaffold_4:11483121-11483444(-) (9)	NA	Q9FLZ8	EID1-like F-box protein 2	AT5G39360.1	EID1-like 2 	LOC_Os07g40710.2	"circadian clock coupling factor-related, putative, expressed"	Medtr6g013970.1	"EDL1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.914.1.A1_at	A	A1TS	POPTR_0014s14510	POPTR_0014s14510 (11)	scaffold_14:10636726-10636959(+) (11)	NA	Q6ZY51	"Phosphoglucan, water dikinase, chloroplastic"	AT5G26570.1	"catalytics;carbohydrate kinases;phosphoglucan, water dikinases "	LOC_Os12g20150.1	"phosphoglucan, water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation||GO:0005975|carbohydrate metabolic process	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.915.1.A1_at	A	A1TS	POPTR_0005s26150	POPTR_0005s26150 (11)	scaffold_5:24227935-24229196(-) (11)	NA	Q6DJ78	BRCA1-A complex subunit BRE	AT5G42470.1	CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g50170.1	"BRE, putative, expressed"	Medtr2g034610.1	Brain and reproductive organ-expressed 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.916.1.S1_at	A	A1TS	POPTR_0002s14500	POPTR_0002s14500 (11)	scaffold_2:10781716-10782266(-) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44360.1	"scarecrow transcription factor family protein, putative, expressed"	Medtr4g029350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.917.1.A1_at	A	A1TS	POPTR_0007s05210	POPTR_0007s05210 (11)	scaffold_7:3361142-3362724(+) (11)	NA	O33513	Protein CbbY	AT4G39970.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g37940.1	"HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed"	AC235753_15.1	"HAD-superfamily hydrolase subfamily IA, variant 3 AC235753.1 88087-84841 F EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.92.1.S1_at	A	A1TS	POPTR_0012s02870	POPTR_0012s02870 (11)	scaffold_12:2317833-2317967(-) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT3G49430.2	SER/ARG-rich protein 34A 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr3g122850.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.920.1.A1_at	A	A1TS	POPTR_0010s22980	POPTR_0010s22980 (11)	scaffold_10:19674773-19675422(-) (11)	NA	Q88C93	Phosphomannomutase/phosphoglucomutase	AT5G17530.2	phosphoglucosamine mutase family protein 	LOC_Os07g26610.1	"phosphoglucomutase, putative, expressed"	Medtr1g120920.1	Phosphoglucosamine mutase 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
Ptp.921.1.A1_at	A	A1TS	POPTR_0003s19750	POPTR_0003s19750 (10)	scaffold_3:18402524-18403640(-) (10)	NA	Q6NLV4	Flowering time control protein FY	AT5G13480.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g72220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g039570.1	"WD repeat-containing protein 33, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.923.1.A1_at	A	A1TS	POPTR_0002s24750	POPTR_0002s24750 (9)	scaffold_2:22023836-22024087(-) (9)	NA	Q56XP9	Ethylene-responsive transcription factor-like protein At4g13040	AT4G13040.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g29550.2	"AP2 domain containing protein, expressed"	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.924.1.S1_s_at	A	A1TS	POPTR_0002s06390	POPTR_0002s06390 (11)	scaffold_2:4249259-4249480(-) (11)	NA	P29344	"30S ribosomal protein S1, chloroplastic"	AT1G71720.1	Nucleic acid-binding proteins superfamily 	LOC_Os01g40640.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
Ptp.925.1.A1_at	A	A2TS	POPTR_0015s12390	POPTR_0015s12390 (11)//POPTR_0296s00220 (11)	scaffold_15:12654262-12655965(-) (11)//scaffold_296:17173-19246(-) (11)	NA	P54150	"Peptide methionine sulfoxide reductase A4, chloroplastic"	AT4G25130.1	peptide met sulfoxide reductase 4 	LOC_Os10g41400.1	"peptide methionine sulfoxide reductase, putative, expressed"	Medtr5g099990.1	Methionine sulfoxide reductase A 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0055114|oxidation reduction	"GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor"""	NA
Ptp.927.1.A1_at	A	A1TS	POPTR_0014s05680	POPTR_0014s05680 (11)	scaffold_14:4223494-4224900(+) (11)	NA	Q8GXL3	Squamosa promoter-binding-like protein 8	AT1G02065.1	squamosa promoter binding protein-like 8 	LOC_Os06g44860.1	"OsSPL10 - SBP-box gene family member, expressed"	Medtr8g005760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.928.1.A1_s_at	A	A1TS	POPTR_0009s06080	POPTR_0009s06080 (11)	scaffold_9:5990303-5991436(+) (11)	POPTR_0001s26850 (6)	Q0WRX3	Serine carboxypeptidase-like 40	AT3G63470.1	serine carboxypeptidase-like 40 	LOC_Os07g46350.1	"OsSCP40 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr3g040960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.929.2.A1_s_at	A	A1TS	POPTR_0008s20250	POPTR_0008s20250 (11)	scaffold_8:14032063-14032578(+) (11)	NA	NA	NA	AT4G02040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.93.1.S1_at	A	A1TS	POPTR_0006s03390	POPTR_0006s03390 (10)	scaffold_6:2163298-2163720(+) (10)	NA	Q43697	Tubulin beta-5 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.930.1.A1_at	A	A1TS	POPTR_0013s07620	POPTR_0013s07620 (11)	scaffold_13:6449079-6449509(-) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT4G27600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os10g42240.1	"kinase, pfkB family, putative, expressed"	Medtr4g107860.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.932.1.S1_at	A	A1TS	POPTR_0012s05360	POPTR_0012s05360 (9)	scaffold_12:4990973-4991876(-) (11)	NA	Q0WKY2	Carbon catabolite repressor protein 4 homolog 5	AT1G73875.1	DNAse I-like superfamily protein 	LOC_Os01g42490.3	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr4g158510.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.933.1.A1_s_at	A	A1TS	POPTR_0019s04990	POPTR_0019s04990 (11)	scaffold_19:5193356-5193818(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g53670.1	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.937.1.A1_at	A	A1TS	POPTR_0005s26180	POPTR_0005s26180 (9)	scaffold_5:24257010-24257442(+) (9)	NA	NA	NA	AT1G30755.1	Protein of unknown function (DUF668) 	LOC_Os01g65330.1	expressed protein	Medtr3g156480.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.938.1.A1_s_at	A	A1TS	POPTR_0006s23760	POPTR_0006s23760 (11)	scaffold_6:22472535-22474702(-) (11)	NA	Q9FUJ1	Cytokinin dehydrogenase 7	AT5G21482.1	cytokinin oxidase 7 	LOC_Os08g35860.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr1g019530.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
Ptp.939.1.A1_a_at	A	A1TS	POPTR_0005s15770	POPTR_0005s15770 (10)	scaffold_5:12376710-12378510(+) (10)	NA	Q86IB5	General transcription factor IIH subunit 3	AT1G18340.1	basal transcription factor complex subunit-related 	LOC_Os02g03340.4	"RNA polymerase II transcription factor B subunit 4, putative, expressed"	Medtr3g097520.1	Transcription factor Tfb4 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0016251|general RNA polymerase II transcription factor activity	GO:0000439|core TFIIH complex
Ptp.94.1.S1_at	A	A1TS	POPTR_0003s18130	POPTR_0003s18130 (10)	scaffold_3:17327055-17327549(+) (10)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT1G80870.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	AC233655_16.1	"Serine/threonine protein kinase, active site AC233655.2 115300-112819 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.940.2.A1_a_at	A	A1TS	POPTR_0008s14840	POPTR_0008s14840 (11)	scaffold_8:9861378-9863433(+) (11)	NA	NA	NA	AT1G14410.1	ssDNA-binding transcriptional regulator 	LOC_Os06g05350.1	"whirly transcription factor domain containing protein, expressed"	Medtr5g039580.1	ssDNA-binding transcriptional regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.941.1.S1_s_at	A	A1MS	POPTR_0006s16300	POPTR_0006s16300 (9)	scaffold_6:14222562-14222773(+) (9)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.942.1.S1_s_at	A	A1TS	POPTR_0010s12280	POPTR_0010s12280 (11)	scaffold_10:12320519-12323079(+) (11)	NA	Q55681	ATP-dependent DNA helicase recG	AT2G01440.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os02g48100.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g034620.1	ATP-requiring DNA helicase RecQ 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.943.1.A1_at	A	A1TS	POPTR_0015s09010	POPTR_0015s09010 (10)	scaffold_15:10334095-10334618(-) (10)	NA	NA	NA	AT3G48200.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os05g51620.2	expressed protein	Medtr3g114240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.95.1.A1_s_at	A	A1TS	POPTR_0010s25900	POPTR_0010s25900 (11)	scaffold_10:21350509-21350758(-) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.951.1.A1_at	A	A1TS	POPTR_0001s07240	POPTR_0001s07240 (11)	scaffold_1:5470259-5470777(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.952.1.S1_at	A	A1TS	POPTR_0015s04580	POPTR_0015s04580 (11)	scaffold_15:4786223-4786352(-) (11)	NA	Q5X4H5	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT3G17970.1	translocon at the outer membrane of chloroplasts 64-III 	LOC_Os03g50010.1	"toc64, putative, expressed"	Medtr4g154900.1	Amidase; 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
Ptp.953.1.A1_x_at	A	A1TS	POPTR_0008s19370	POPTR_0008s19370 (11)	scaffold_8:13322779-13323476(+) (11)	NA	O15488	Glycogenin-2	AT1G60470.1	galactinol synthase 4 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.955.1.A1_s_at	A	A1TS	POPTR_0001s02140	POPTR_0001s02140 (11)	scaffold_1:1587095-1587574(-) (11)	NA	Q9LQM7	Heat stress transcription factor A-1d	AT1G32330.1	heat shock transcription factor A1D 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.956.1.A1_at	A	A1TS	POPTR_0017s03590	POPTR_0017s03590 (11)	scaffold_17:2612084-2612466(+) (11)	POPTR_0018s14960 (7)	Q8RXN0	ABC transporter G family member 11	AT1G17840.1	white-brown complex homolog protein 11 	LOC_Os10g35180.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g104580.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.958.1.S1_at	A	A1TS	POPTR_0006s23660	POPTR_0006s23660 (9)	scaffold_6:22366718-22367867(-) (9)	NA	P54697	Myosin-J heavy chain	AT4G33200.1	"myosin, putative "	LOC_Os06g29350.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
Ptp.96.1.S1_at	A	A1MS	POPTR_0003s15410	POPTR_0003s15410 (11)	scaffold_3:15200540-15201072(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.961.1.A1_at	A	A1TS	POPTR_0016s10710	POPTR_0016s10710 (11)	scaffold_16:9004660-9005247(+) (11)	NA	NA	NA	AT2G36885.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 58 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). 	LOC_Os03g04470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.962.1.S1_s_at	A	A1TS	POPTR_0008s02570	POPTR_0008s02570 (11)	scaffold_8:1263809-1264223(-) (11)	NA	O48928	Cytochrome P450 77A3	AT5G04660.1	"cytochrome P450, family 77, subfamily A, polypeptide 4 "	LOC_Os04g33370.1	"cytochrome P450, putative, expressed"	Medtr1g116900.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.963.1.A1_s_at	A	A1TS	POPTR_0013s12490	POPTR_0013s12490 (11)	scaffold_13:13142449-13142947(-) (11)	NA	Q9SIL7	Fasciclin-like arabinogalactan protein 6	AT2G20520.1	FASCICLIN-like arabinogalactan 6 	LOC_Os01g47780.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.965.1.S1_at	A	A1TS	POPTR_0014s10140	POPTR_0014s10140 (11)	scaffold_14:7607948-7608529(+) (11)	NA	P19684	"33 kDa ribonucleoprotein, chloroplastic"	AT1G01080.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g02390.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g146100.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.966.1.A1_s_at	A	A1MS	POPTR_0014s02950	POPTR_0014s02950 (11)	scaffold_14:2426717-2426887(+) (11)	NA	P40781	Protein CYPRO4	AT4G33400.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g54780.1	"CYPRO4, putative, expressed"	Medtr3g147800.1	AMP-dependent synthetase and ligase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.968.1.A1_at	A	A1MS	POPTR_0018s14060	POPTR_0018s14060 (10)	scaffold_18:14314133-14314394(+) (10)	NA	Q9LVD3	"Pentatricopeptide repeat-containing protein At5g57250, mitochondrial"	AT5G57250.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g15840.1	PPR repeat containing protein	Medtr2g042470.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.969.1.A1_a_at	A	A1TS	POPTR_0011s04150	POPTR_0011s04150 (11)	scaffold_11:4202145-4202298(+) (11)	NA	Q8VYN2	Vesicle-associated protein 4-2	AT4G21450.1	PapD-like superfamily protein 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
Ptp.969.3.A1_at	A	A1TA	POPTR_0006s03390	POPTR_0006s03390 (11)	scaffold_6:2163262-2163335(-) (11)	NA	Q43697	Tubulin beta-5 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.971.1.S1_at	A	A1TS	POPTR_0003s08900	POPTR_0003s08900 (11)	scaffold_3:10216958-10217422(-) (11)	NA	P08451	Ferredoxin-2	AT1G32550.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os03g48040.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr8g102770.1	Ferredoxin 	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.977.1.A1_at	A	A1TS	POPTR_0009s15260	POPTR_0009s15260 (11)	scaffold_9:11848736-11849572(-) (11)	NA	NA	NA	AT5G22790.1	reticulata-related 1 	LOC_Os04g44290.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.978.1.A1_at	A	A1TS	POPTR_0002s26310	POPTR_0002s26310 (11)	scaffold_2:23314695-23314849(+) (11)	NA	NA	NA	AT5G42950.1	GYF domain-containing protein 	LOC_Os07g04530.1	"GYF domain containing protein, putative, expressed"	Medtr7g017760.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.979.1.S1_s_at	A	A1MA	POPTR_0010s09970	POPTR_0010s09970 (11)	scaffold_10:10560707-10561239(+) (11)	NA	Q9LUW0	"Lipoxygenase 5, chloroplastic"	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr1g132610.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.98.1.S1_at	A	A1TS	POPTR_0006s10540	POPTR_0006s10540 (11)	scaffold_6:7895436-7897223(-) (11)	NA	P81748	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os12g01680.1	"macrophage migration inhibitory factor, putative"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.980.1.A1_s_at	A	A1TS	POPTR_0002s22090	POPTR_0002s22090 (9)	scaffold_2:18791548-18792690(-) (9)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr2g030170.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.981.1.S1_at	A	A1TS	POPTR_0009s04570	POPTR_0009s04570 (11)	scaffold_9:4886798-4887341(-) (11)	NA	NA	NA	AT5G58960.1	Plant protein of unknown function (DUF641) 	LOC_Os03g61040.1	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.982.1.A1_s_at	A	A1TS	POPTR_0007s00570	POPTR_0007s00570 (11)	scaffold_7:227672-228142(+) (11)	NA	Q39172	Probable NADP-dependent oxidoreductase P1	AT5G16970.1	alkenal reductase 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.984.1.S1_at	A	A1TS	POPTR_0010s10050	POPTR_0010s10050 (11)	scaffold_10:10642911-10643379(-) (11)	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.987.1.S1_at	A	A1TS	POPTR_0013s12870	POPTR_0013s12870 (11)	scaffold_13:13494712-13495317(-) (11)	NA	P27054	Endochitinase PR4	AT3G54420.1	homolog of carrot EP3-3 chitinase 	LOC_Os02g39330.1	"CHIT1 - Chitinase family protein precursor, expressed"	Medtr2g120640.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
Ptp.99.1.S1_a_at	A	A1TS	POPTR_0010s23850	POPTR_0010s23850 (11)	scaffold_10:20314300-20314382(-) (11)	NA	NA	NA	AT3G52180.1	dual specificity protein phosphatase (DsPTP1) family protein 	LOC_Os03g01750.2	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.99.1.S1_at	A	A1MS	POPTR_0010s23850	POPTR_0010s23850 (9)	scaffold_10:20315826-20315942(-) (9)	NA	NA	NA	AT3G52180.1	dual specificity protein phosphatase (DsPTP1) family protein 	LOC_Os03g01750.2	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.992.1.A1_at	A	A1TA	POPTR_0015s12000	POPTR_0015s12000 (11)	scaffold_15:12442480-12448974(-) (11)	NA	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129920.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.993.1.S1_a_at	A	A1TS	POPTR_0001s34620	POPTR_0001s34620 (11)	scaffold_1:32860091-32860495(+) (11)	NA	Q9SSA5	"Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic"	AT3G01480.1	cyclophilin 38 	LOC_Os08g29370.1	"peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.997.1.A1_at	A	A1TS	POPTR_0010s02700	POPTR_0010s02700 (11)	scaffold_10:3149528-3150552(-) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT5G18810.1	SC35-like splicing factor 28 	LOC_Os03g24890.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g139830.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.100.1.S1_at	A	A1TS	POPTR_0014s04320	POPTR_0014s04320 (9)	scaffold_14:3367437-3368440(-) (9)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.1000.1.A1_at	A	A1TS	POPTR_0017s07570	POPTR_0017s07570 (11)	scaffold_17:5891142-5891419(-) (11)	NA	Q8W490	Serine/threonine-protein kinase PEPKR2	AT1G12680.1	phosphoenolpyruvate carboxylase-related kinase 2 	LOC_Os09g29170.2	"CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g144630.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.100024.1.A1_at	A	A1MS	POPTR_0018s14670	POPTR_0018s14670 (9)	scaffold_18:14799563-14799724(-) (9)	NA	Q9BYJ9	YTH domain family protein 1	AT5G58190.1	evolutionarily conserved C-terminal region 10 	LOC_Os08g44200.1	"ECT5, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100032.1.A1_at	A	A1TS	POPTR_0458s00200	POPTR_0458s00200 (9)	scaffold_458:3706-4133(-) (9)	NA	Q9FG65	Cytochrome P450 81D1	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55260.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.100048.1.A1_at	A	A1TS	POPTR_0001s30980	POPTR_0001s30980 (11)	scaffold_1:29396439-29396937(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100051.1.A1_at	A	A1TS	POPTR_0010s05280	POPTR_0010s05280 (9)	scaffold_10:6746750-6747211(+) (9)	NA	Q9LDE3	F-box/kelch-repeat protein At1g23390	AT1G23390.1	Kelch repeat-containing F-box family protein 	LOC_Os01g50840.1	expressed protein	Medtr5g046610.1	Kelch repeat type 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10008.1.A1_at	A	A1TS	POPTR_0002s15360	POPTR_0002s15360 (11)	scaffold_2:11501256-11501709(-) (11)	NA	O64647	Transcription factor TCP9	AT2G45680.1	TCP family transcription factor  	LOC_Os08g43160.1	"TCP family transcription factor, putative, expressed"	Medtr1g129720.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100080.1.A1_at	A	A1TS	POPTR_0007s12260	POPTR_0007s12260 (11)	scaffold_7:12581435-12582417(+) (11)	NA	Q12010	Uncharacterized membrane protein YOL092W	AT4G36850.1	PQ-loop repeat family protein / transmembrane family protein 	LOC_Os01g16170.5	"PQ loop repeat domain containing protein, expressed"	Medtr5g019090.1	Cystinosin/ERS1p repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100081.1.A1_at	A	A1TS	POPTR_0006s12700	POPTR_0006s12700 (9)	scaffold_6:9858758-9858998(+) (9)	NA	Q7ZYA2	Transcription initiation factor TFIID subunit 8	AT4G34340.1	TBP-associated factor 8 	LOC_Os12g38620.3	"bromodomain associated family protein, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100112.1.A1_at	A	A1TS	POPTR_0010s05910	POPTR_0010s05910 (9)	scaffold_10:7342120-7342475(+) (9)	NA	Q9LIP4	Cytochrome P450 71B36	AT3G26320.1	"cytochrome P450, family 71, subfamily B, polypeptide 36 "	LOC_Os03g63310.1	"cytochrome P450 71E1, putative, expressed"	Medtr1g028100.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.100128.1.A1_at	A	A2TS	POPTR_0019s06120	POPTR_0019s06120 (11)//POPTR_0013s06750 (9)	scaffold_13:5464780-5468931(-) (11)//scaffold_19:6662542-6667032(+) (11)	NA	Q946J8	Chromo domain-containing protein LHP1	AT5G17690.1	like heterochromatin protein (LHP1) 	LOC_Os10g17770.1	"chromo domain-containing protein LHP1, putative, expressed"	Medtr3g163840.1	Chromo; Chromo shadow 	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.100134.1.A1_s_at	A	A1MS	POPTR_0002s08940	POPTR_0002s08940 (11)	scaffold_2:6318856-6318974(-) (11)	NA	NA	NA	AT4G08460.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.1	expressed protein	Medtr3g098400.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10018.1.S1_a_at	A	A1TS	POPTR_0005s27630	POPTR_0005s27630 (11)	scaffold_5:25201169-25201475(+) (11)	NA	Q9LM71	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic"	AT1G20810.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os02g02550.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr3g160000.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.100195.1.S1_a_at	A	A2TS	POPTR_0001s25630	POPTR_0001s25630 (11)//POPTR_0009s04780 (9)	scaffold_1:24700802-24701770(+) (11)//scaffold_9:5047435-5048449(+) (9)	NA	Q04VF1	Phosphomethylpyrimidine synthase	AT2G29630.3	thiaminC 	LOC_Os03g47610.8	"thiamine biosynthesis protein thiC, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.100195.2.S1_s_at	A	A2TS	POPTR_0001s25630	POPTR_0001s25630 (11)//POPTR_0009s04780 (10)	scaffold_1:24701885-24702403(+) (11)//scaffold_9:5048619-5049082(+) (10)	NA	Q04VF1	Phosphomethylpyrimidine synthase	AT2G29630.3	thiaminC 	LOC_Os03g47610.8	"thiamine biosynthesis protein thiC, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.1002.2.A1_a_at	A	A1TS	POPTR_0008s08590	POPTR_0008s08590 (11)	scaffold_8:5322910-5324418(-) (11)	NA	NA	NA	AT2G02960.3	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os08g33860.2	"zinc finger, C3HC4 type, putative, expressed"	Medtr5g044040.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10021.1.A1_at	A	A1TS	POPTR_0003s11100	POPTR_0003s11100 (11)	scaffold_3:11965601-11967429(-) (11)	NA	NA	NA	AT4G22550.1	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os02g44290.1	"phosphatase, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.100235.1.S1_s_at	A	A2TS	POPTR_0002s08750	POPTR_0002s08750 (11)//POPTR_0005s16020 (11)	scaffold_2:6144796-6145337(-) (11)//scaffold_5:12674442-12674923(-) (11)	NA	Q9FEL6	Auxin transporter-like protein 3	AT1G77690.1	like AUX1 3 	LOC_Os03g14080.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g097960.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10026.1.S1_at	A	A1TS	POPTR_0016s06360	POPTR_0016s06360 (9)	scaffold_16:4265056-4266722(-) (9)	NA	Q8WVE0	N(6)-adenine-specific DNA methyltransferase 2	AT3G58470.1	nucleic acid binding;methyltransferases 	LOC_Os03g53890.1	"N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100295.1.S1_at	A	A1TS	POPTR_0002s09920	POPTR_0002s09920 (11)	scaffold_2:7109819-7110146(+) (11)	NA	Q28717	Serine/threonine-protein phosphatase 2A activator	AT4G08960.1	phosphotyrosyl phosphatase activator (PTPA) family protein 	LOC_Os06g11640.1	"serine/threonine-protein phosphatase 2A activator 2, putative, expressed"	Medtr4g069930.1	"Phosphotyrosyl phosphatase activator, PTPA "	NA	GO:0019211|phosphatase activator activity	NA
PtpAffx.1003.1.A1_at	A	A1TS	POPTR_0001s46440	POPTR_0001s46440 (11)	scaffold_1:46823356-46824099(+) (11)	NA	A4FV84	mRNA turnover protein 4 homolog	AT1G25260.1	Ribosomal protein L10 family protein 	LOC_Os11g01420.1	"ribosomal protein L10, putative, expressed"	Medtr2g007880.1	Ribosomal protein L10 	GO:0042254|ribosome biogenesis	NA	GO:0005622|intracellular
PtpAffx.10032.1.S1_a_at	A	A1TS	POPTR_0005s01840	POPTR_0005s01840 (11)	scaffold_5:1227631-1227894(+) (11)	POPTR_0013s01080 (6)	P31414	Pyrophosphate-energized vacuolar membrane proton pump 1	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.100369.1.A1_at	A	A1TS	POPTR_0001s25950	POPTR_0001s25950 (11)	scaffold_1:25033005-25033548(+) (11)	NA	P42730	Heat shock protein 101	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100443.1.S1_at	A	A1TS	POPTR_0019s10280	POPTR_0019s10280 (11)	scaffold_19:11861725-11862390(-) (11)	NA	NA	NA	AT1G71500.1	Rieske (2Fe-2S) domain-containing protein 	LOC_Os11g13850.3	"rieske domain containing protein, expressed"	Medtr5g008800.1	Rieske [2Fe-2S] region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100451.1.S1_at	A	A1TS	POPTR_0012s10590	POPTR_0012s10590 (11)	scaffold_12:11317517-11317725(-) (11)	NA	Q9FI61	Ubiquitin-conjugating enzyme E2 27	AT5G50870.1	ubiquitin-conjugating enzyme 27 	LOC_Os01g70140.1	"ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed"	Medtr3g151060.1	"Ubiquitin-associated; Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.10046.2.S1_at	A	A1TS	POPTR_0008s14830	POPTR_0008s14830 (9)	scaffold_8:9851430-9853314(-) (9)	NA	NA	NA	AT1G27000.1	Protein of unknown function (DUF1664) 	LOC_Os05g08980.3	expressed protein	Medtr5g039570.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100467.1.S1_at	A	A1TS	POPTR_0010s15100	POPTR_0010s15100 (11)	scaffold_10:14462680-14464458(-) (11)	NA	Q5PNU3	AMSH-like ubiquitin thiolesterase 3	AT4G16144.1	associated molecule with the SH3 domain of STAM 3 	LOC_Os01g31470.1	"mov34/MPN/PAD-1 family protein, expressed"	Medtr8g138240.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100482.1.A1_s_at	A	A1TS	POPTR_0003s05170	POPTR_0003s05170 (11)	scaffold_3:6379137-6379182(+) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os06g06780.1	"harpin-induced protein, putative, expressed"	Medtr2g122860.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.10049.1.S1_at	A	A1TS	POPTR_0013s06930	POPTR_0013s06930 (11)	scaffold_13:5618431-5619701(-) (11)	NA	NA	NA	AT3G54680.1	proteophosphoglycan-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100515.1.S1_at	A	A1TS	POPTR_0009s12840	POPTR_0009s12840 (11)	scaffold_9:10405647-10406330(+) (11)	NA	Q9T0J6	tRNA-dihydrouridine synthase 3-like	AT4G38890.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os04g02730.1	"tRNA-dihydrouridine synthase 3-like, putative, expressed"	Medtr3g163110.1	"Zinc finger, CCCH-type; Dihydrouridine synthase, DuS "	GO:0044260|cellular macromolecule metabolic process||GO:0008033|tRNA processing||GO:0055114|oxidation reduction	GO:0003676|nucleic acid binding||GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity||GO:0008270|zinc ion binding	NA
PtpAffx.100540.1.S1_at	A	A1TS	POPTR_0009s05170	POPTR_0009s05170 (11)	scaffold_9:5328073-5329048(+) (11)	NA	Q9STZ2	SelT-like protein	AT3G47300.1	SELT-like protein precursor 	LOC_Os01g61580.1	"selT-like protein precursor, putative, expressed"	Medtr4g013030.1	SelT/selW/selH selenoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100618.1.S1_at	A	A1TS	POPTR_0007s09440	POPTR_0007s09440 (10)	scaffold_7:8853454-8855039(+) (10)	NA	P32361	Serine/threonine-protein kinase/endoribonuclease IRE1	AT2G17520.1	Endoribonuclease/protein kinase IRE1-like 	LOC_Os07g28820.1	"ribonuclease 2-5A family protein, expressed"	Medtr5g024470.1	Protein kinase; PUG 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006397|mRNA processing	"GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0016891|""endoribonuclease activity, producing 5'-phosphomonoesters"""	NA
PtpAffx.100620.1.S1_at	A	A1TS	POPTR_0005s26910	POPTR_0005s26910 (9)	scaffold_5:24760428-24761493(-) (10)	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G42220.1	Ubiquitin-like superfamily protein 	LOC_Os07g31540.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.2	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100628.1.S1_s_at	A	A1TS	POPTR_0005s26500	POPTR_0005s26500 (11)	scaffold_5:24498810-24499394(-) (11)	NA	Q9P6K0	Uncharacterized HTH La-type RNA-binding protein C1527.03	AT4G35890.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g06070.1	"la domain containing protein, putative, expressed"	Medtr1g031850.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100638.1.A1_at	A	A1TS	POPTR_0006s14820	POPTR_0006s14820 (10)	scaffold_6:12252370-12253283(+) (10)	NA	Q09464	Uncharacterized protein C16C10.8	AT2G19385.1	zinc ion binding 	LOC_Os01g40110.1	"ZOS1-11 - C2H2 zinc finger protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100692.1.S1_at	A	A1TS	POPTR_0007s07880	POPTR_0007s07880 (11)	scaffold_7:6333586-6333714(-) (11)	NA	NA	NA	AT3G19780.1	"LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32 species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os10g34390.1	expressed protein	Medtr4g101420.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10070.1.A1_at	A	A1TS	POPTR_0013s02670	POPTR_0013s02670 (9)	scaffold_13:1585365-1585453(-) (9)	NA	Q8RXX9	E3 ubiquitin-protein ligase ATL6	AT3G05200.1	RING/U-box superfamily protein 	LOC_Os09g29310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100713.1.S1_a_at	A	A1TS	POPTR_0002s04450	POPTR_0002s04450 (11)	scaffold_2:2793991-2795215(-) (11)//scaffold_5:22732692-22734869(+) (11)	NA	Q9SMU7	Signal recognition particle 9 kDa protein	AT3G49100.1	"Signal recognition particle, SRP9/SRP14 subunit "	LOC_Os06g14550.1	"signal recognition particle 9 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane||GO:0045900|negative regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0005515|protein binding||GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
PtpAffx.100713.2.S1_at	A	A1TS	POPTR_0002s04450	POPTR_0002s04450 (11)	scaffold_2:2793542-2795725(-) (11)	NA	Q9SMU7	Signal recognition particle 9 kDa protein	AT3G49100.1	"Signal recognition particle, SRP9/SRP14 subunit "	LOC_Os06g14550.1	"signal recognition particle 9 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane||GO:0045900|negative regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0005515|protein binding||GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
PtpAffx.100720.1.S1_at	A	A1TS	POPTR_0001s10980	POPTR_0001s10980 (11)	scaffold_1:8515737-8516239(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01960.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100744.1.S1_s_at	A	A1TS	POPTR_0004s00560	POPTR_0004s00560 (11)	scaffold_4:212559-212979(+) (11)	NA	NA	NA	AT4G22190.1	unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). 	LOC_Os11g30430.1	expressed protein	Medtr2g029070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100746.1.S1_at	A	A1TS	POPTR_0010s00520	POPTR_0010s00520 (9)	scaffold_10:269310-269820(-) (9)	NA	NA	NA	AT3G06960.1	pigment defective 320 	LOC_Os01g14820.1	expressed protein	Medtr4g089750.1	"Fgenesh protein 89, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100749.1.S1_at	A	A1TS	POPTR_0019s14460	POPTR_0019s14460 (11)	scaffold_19:15242546-15243061(+) (11)	NA	Q8S8P5	Probable WRKY transcription factor 33	AT2G38470.1	WRKY DNA-binding protein 33 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g082420.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.10075.1.S1_at	A	A1TS	POPTR_0001s41460	POPTR_0001s41460 (10)	scaffold_1:41084162-41084660(+) (10)	NA	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.10075.2.S1_at	A	A1TS	POPTR_0001s41460	POPTR_0001s41460 (9)	scaffold_1:41083132-41083838(+) (10)//scaffold_1659:3032-3622(+) (9)	POPTR_1659s00200 (8)	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.100773.1.S1_at	A	A1MS	POPTR_0003s11770	POPTR_0003s11770 (9)	scaffold_3:12544003-12544882(+) (10)	NA	NA	NA	AT4G22860.1	Cell cycle regulated microtubule associated protein 	LOC_Os06g03980.1	expressed protein	Medtr5g011520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100788.1.S1_a_at	A	A1TS	POPTR_0016s00700	POPTR_0016s00700 (11)	scaffold_16:246652-248111(-) (11)	NA	Q8LFN9	Probable ADP-ribosylation factor GTPase-activating protein AGD13	AT5G47710.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os09g07800.1	expressed protein	Medtr2g032750.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1008.1.S1_s_at	A	A1TS	POPTR_0001s09060	POPTR_0001s09060 (11)	scaffold_1:6932866-6933851(-) (11)	NA	Q9C8S9	Probable DEAD-box ATP-dependent RNA helicase 48	AT1G63250.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os02g57980.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.100809.1.S1_at	A	A1TS	POPTR_0010s12010	POPTR_0010s12010 (11)	scaffold_10:12119288-12119751(-) (11)	NA	NA	NA	AT1G70750.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10083.2.S1_at	A	A1TA	POPTR_0017s09870	POPTR_0017s09870 (9)	scaffold_17:8590035-8590430(-) (9)	NA	Q9LI89	F-box/kelch-repeat protein At3g27150	AT3G27150.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g52830.2	"OsFBK15 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g110510.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100845.1.S1_at	A	A1TS	POPTR_0004s05250	POPTR_0004s05250 (11)	scaffold_4:3996703-3996961(+) (11)	NA	Q8GYB1	"Nudix hydrolase 15, mitochondrial"	AT1G28960.2	nudix hydrolase homolog 15 	LOC_Os08g28860.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr2g018810.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.10087.1.A1_at	A	A1TS	POPTR_0006s08350	POPTR_0006s08350 (11)	scaffold_6:6074131-6074782(-) (11)	NA	Q9SJM7	Uridine nucleosidase 1	AT2G36310.1	uridine-ribohydrolase 1 	LOC_Os08g44370.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr7g127040.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100886.1.S1_s_at	A	A2TS	POPTR_0098s00220	POPTR_0098s00290 (11)//POPTR_0098s00220 (11)	scaffold_98:6465-7250(-) (11)//scaffold_98:42961-44213(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22380.1	UDP-glucosyl transferase 85A3 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100887.1.S1_at	A	A1TS	POPTR_0011s00840	POPTR_0011s00840 (9)	scaffold_11:425534-427642(-) (10)	NA	Q9H223	EH domain-containing protein 4	AT4G05520.1	EPS15 homology domain 2 	LOC_Os06g47330.1	"dynamin family protein, putative, expressed"	Medtr2g029240.1	"EPS15 homology (EH); Dynamin; Actin-binding, actinin-type "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10090.1.S1_at	A	A1TS	POPTR_0010s20190	POPTR_0010s20190 (11)	scaffold_10:17876119-17876664(-) (11)	NA	NA	NA	AT5G01090.1	Concanavalin A-like lectin family protein 	LOC_Os06g14260.1	"lectin-like receptor kinase, putative"	Medtr3g092880.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.100900.1.S1_at	A	A1TS	POPTR_0001s40870	POPTR_0001s40870 (9)	scaffold_1:40464248-40465767(-) (9)	NA	Q9S758	Squamosa promoter-binding-like protein 5	AT3G15270.1	squamosa promoter binding protein-like 5 	LOC_Os07g32170.1	"OsSPL13 - SBP-box gene family member, expressed"	Medtr2g017680.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.100957.1.S1_s_at	A	A2TS	POPTR_0004s04780	POPTR_0004s04780 (11)//POPTR_0335s00200 (11)	scaffold_335:15573-16223(+) (11)//scaffold_4:3545898-3546551(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g017900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100964.1.A1_s_at	A	A1TS	POPTR_0007s14880	POPTR_0007s14880 (11)	scaffold_7:14583135-14584178(+) (11)	NA	NA	NA	AT5G67610.1	Uncharacterized conserved protein (DUF2215) 	LOC_Os03g31570.1	"proline-rich family protein, putative, expressed"	Medtr5g015430.1	"protein F1K23.6 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100968.1.S1_at	A	A1TS	POPTR_0003s05520	POPTR_0003s05520 (10)	scaffold_3:6823689-6824249(-) (10)	NA	NA	NA	AT1G80000.2	CASC3/Barentsz eIF4AIII binding 	LOC_Os01g41190.2	"glycine-rich protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100975.1.S1_s_at	A	A1TS	POPTR_0015s03960	POPTR_0015s03960 (11)	scaffold_15:3858768-3862027(-) (11)	NA	NA	NA	AT3G18240.2	"Ribosomal protein S24/S35, mitochondrial "	LOC_Os08g40230.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100994.2.S1_a_at	A	A1TS	POPTR_0006s21520	POPTR_0006s21520 (11)	scaffold_6:20569967-20572784(-) (11)	NA	Q8IWL3	"Iron-sulfur cluster co-chaperone protein HscB, mitochondrial"	AT5G06410.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os12g27070.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding	NA
PtpAffx.1010.1.S1_at	A	A1TS	POPTR_0017s04650	POPTR_0017s04650 (9)	scaffold_17:3548135-3548915(-) (9)	NA	Q5ZLK1	DDB1- and CUL4-associated factor 13	AT4G28450.1	nucleotide binding;protein binding 	LOC_Os01g13730.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g028840.1	Sof1-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10101.1.A1_at	A	A1TS	POPTR_0010s21480	POPTR_0010s21480 (11)	scaffold_10:18738359-18738942(+) (11)	NA	NA	NA	AT2G39570.1	ACT domain-containing protein 	LOC_Os05g02220.3	"ACT domain containing protein, expressed"	Medtr7g025660.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.101017.1.A1_at	A	A1TS	POPTR_0011s03490	POPTR_0011s03490 (11)	scaffold_11:3589589-3589702(+) (11)	NA	Q84UV0	"Linalool synthase, chloroplastic"	AT1G61680.1	terpene synthase 14 	LOC_Os02g02930.1	"terpene synthase, putative, expressed"	Medtr3g068760.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.101017.1.A1_s_at	A	A1TS	POPTR_0011s03490	POPTR_0011s03490 (11)	scaffold_11:3589435-3589603(+) (11)	NA	Q84UV0	"Linalool synthase, chloroplastic"	AT1G61680.1	terpene synthase 14 	LOC_Os02g02930.1	"terpene synthase, putative, expressed"	Medtr3g068760.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.10102.1.A1_at	A	A1TS	POPTR_0002s19230	POPTR_0002s19230 (11)	scaffold_2:15155541-15155973(-) (11)	NA	O15488	Glycogenin-2	AT2G47180.1	galactinol synthase 1 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.10103.3.S1_at	A	A1MS	POPTR_0014s10380	POPTR_0014s10380 (10)	scaffold_14:7774332-7774741(-) (10)	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT5G54130.2	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC233657_18.1	Calcium-binding EF-hand; Endonuclease/exonuclease/phosphatase AC233657.1 101749-97143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101048.1.A1_at	A	A1TS	POPTR_0010s13580	POPTR_0010s13580 (9)	scaffold_10:13388086-13388536(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101053.1.A1_at	A	A1TS	POPTR_0009s04180	POPTR_0009s04180 (11)	scaffold_9:4678142-4678605(+) (11)	NA	NA	NA	AT3G46780.1	plastid transcriptionally active 16 	LOC_Os05g22614.1	"PTAC16, putative, expressed"	Medtr4g084290.1	"PTAC16 ; binding {Arab, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10106.1.S1_at	A	A1TS	POPTR_0003s19190	POPTR_0003s19190 (11)	scaffold_3:17986367-17986903(+) (11)//scaffold_3:17997300-17997906(+) (11)	POPTR_0003s19180 (8)	Q940G6	Probable gibberellin receptor GID1L3	AT5G16080.1	carboxyesterase 17 	LOC_Os05g33940.1	"alpha/beta hydrolase fold, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.10107.1.A1_s_at	A	A1TS	POPTR_0008s06960	POPTR_0008s06960 (11)	scaffold_8:4205055-4205542(-) (11)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.10107.2.A1_at	A	A1MS	POPTR_0008s06960	POPTR_0008s06960 (11)	scaffold_8:4205923-4206470(-) (11)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.101087.1.S1_a_at	A	A1TS	POPTR_0019s12320	POPTR_0019s12320 (11)	scaffold_19:13379240-13379399(-) (11)//scaffold_5:4701317-4701476(-) (11)	NA	O49675	"Probable carotenoid cleavage dioxygenase 4, chloroplastic"	AT4G19170.1	nine-cis-epoxycarotenoid dioxygenase 4 	LOC_Os02g47510.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101087.1.S1_at	A	A1TS	POPTR_0019s12320	POPTR_0019s12320 (10)	scaffold_19:13379047-13379502(-) (10)	NA	O49675	"Probable carotenoid cleavage dioxygenase 4, chloroplastic"	AT4G19170.1	nine-cis-epoxycarotenoid dioxygenase 4 	LOC_Os02g47510.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101087.2.S1_at	A	A1TA	POPTR_0005s07010	POPTR_0005s07010 (11)	scaffold_5:4701003-4701317(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101103.1.A1_at	A	A1TS	POPTR_0005s05080	POPTR_0005s05080 (11)	scaffold_5:3378844-3379102(-) (11)	NA	P73068	Rubredoxin	AT1G54500.1	Rubredoxin-like superfamily protein 	LOC_Os08g23410.1	"rubredoxin family protein, putative, expressed"	Medtr7g140460.1	Rubredoxin 	NA	GO:0046872|metal ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.10111.1.S1_at	A	A1TS	POPTR_0015s11320	POPTR_0015s11320 (11)	scaffold_15:11919919-11920459(+) (11)	NA	Q42522	"Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic"	AT3G48730.1	"glutamate-1-semialdehyde 2,1-aminomutase 2 "	LOC_Os08g41990.1	"aminotransferase, putative, expressed"	Medtr3g163620.1	"Glutamate-1-semialdehyde-2,1-aminomutase; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.101117.1.A1_at	A	A1TS	POPTR_0006s23810	POPTR_0006s23810 (11)	scaffold_6:22535111-22535668(-) (11)	NA	Q9FJA2	Transcription factor TT2	AT5G35550.1	Duplicated homeodomain-like superfamily protein 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101137.1.A1_at	A	A1TS	POPTR_0002s20100	POPTR_0002s20100 (11)	scaffold_2:16032112-16032644(+) (11)	NA	NA	NA	AT2G47485.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g132640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101145.1.A1_at	A	A1TS	POPTR_0001s17280	POPTR_0001s17280 (10)	scaffold_1:14100197-14100690(-) (11)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.2	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.101182.1.A1_at	A	A1TS	POPTR_0018s03670	POPTR_0018s03670 (11)	scaffold_18:3128859-3129385(-) (11)	NA	O59811	Zinc finger protein C550.15c	AT4G31420.1	Zinc finger protein 622 	LOC_Os06g47840.1	"ZOS6-08 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.101189.1.A1_at	A	A1TS	POPTR_0015s00600	POPTR_0015s00600 (9)	scaffold_15:361789-361964(-) (9)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10120.3.S1_at	A	A1MS	POPTR_0012s01620	POPTR_0012s01620 (11)	scaffold_12:1237286-1237453(+) (11)	NA	Q39219	"Alternative oxidase 1a, mitochondrial"	AT3G22370.1	alternative oxidase 1A 	LOC_Os04g51150.1	"transposon protein, putative, unclassified, expressed"	Medtr5g026770.1	Alternative oxidase 	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
PtpAffx.101216.1.A1_at	A	A1TS	POPTR_0006s04950	POPTR_0006s04950 (11)	scaffold_6:3454743-3455116(+) (11)	NA	NA	NA	AT2G41770.1	Protein of unknown function (DUF288) 	LOC_Os05g32500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101219.1.A1_a_at	A	A1TS	POPTR_0010s23520	POPTR_0010s23520 (11)	scaffold_10:20075612-20076099(+) (11)	NA	NA	NA	AT2G36840.1	ACT-like superfamily protein 	LOC_Os09g39740.1	"ACT domain containing protein, expressed"	Medtr7g124000.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.101228.1.A1_at	A	A2TS	POPTR_0015s05660	POPTR_0015s05660 (11)//POPTR_0015s05670 (11)	scaffold_15:5993317-5993655(+) (11)//scaffold_15:6003824-6004162(+) (11)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101268.1.A1_at	A	A1TS	POPTR_0007s06000	POPTR_0007s06000 (11)	scaffold_7:4138496-4139054(-) (11)	NA	NA	NA	AT4G39700.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g26650.2	"heavy metal-associated domain containing protein, expressed"	Medtr4g140470.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.101270.1.S1_at	A	A1TS	POPTR_0005s27840	POPTR_0005s27840 (11)	scaffold_5:25318883-25319354(+) (11)	NA	NA	NA	AT2G33585.1	unknown protein; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g40190.1	expressed protein	CU179634_6.1	hypothetical protein CU179634.6 21470-21926 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101285.1.A1_at	A	A1TS	POPTR_0015s13610	POPTR_0015s13610 (10)	scaffold_15:13485024-13485542(+) (10)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT5G52140.1	RING/U-box superfamily protein 	LOC_Os03g07790.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g087360.1	"Zinc finger, RING-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101307.1.A1_at	A	A1TS	POPTR_0005s03520	POPTR_0005s03520 (11)	scaffold_5:2363296-2364284(-) (11)	NA	Q6NYY9	Transmembrane protein 49	AT4G14950.1	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101313.1.A1_at	A	A1TS	POPTR_0002s20250	POPTR_0002s20250 (9)	scaffold_2:16207110-16207606(+) (9)	NA	O46072	Probable ATP-dependent RNA helicase kurz	AT1G33390.1	RNA helicase family protein 	LOC_Os02g50370.1	"helicase domain-containing protein, putative, expressed"	Medtr4g024790.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.101335.1.A1_at	A	A1TS	POPTR_0003s16200	POPTR_0003s16200 (11)	scaffold_3:15795625-15796400(-) (11)	NA	NA	NA	AT3G23255.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os10g32860.2	expressed protein	Medtr4g107920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101338.1.A1_at	A	A1TS	POPTR_0010s20880	POPTR_0010s20880 (11)	scaffold_10:18314185-18314596(+) (11)	NA	Q9CAY3	Glycerol-3-phosphate acyltransferase 5	AT3G11430.1	glycerol-3-phosphate acyltransferase 5 	LOC_Os05g38350.1	"glycerol-3-phosphate acyltransferase 8, putative, expressed"	Medtr5g087710.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.101360.1.A1_at	A	A1TS	POPTR_0013s08380	POPTR_0013s08380 (11)	scaffold_13:7462700-7463073(+) (11)	NA	Q9C5T3	Probable WRKY transcription factor 26	AT5G07100.1	WRKY DNA-binding protein 26 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.101361.1.S1_at	A	A1TS	POPTR_0004s12830	POPTR_0004s12830 (10)	scaffold_4:12164612-12165031(+) (10)	NA	NA	NA	AT5G39785.1	Protein of unknown function (DUF1666) 	LOC_Os09g24700.1	expressed protein	Medtr7g009560.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10139.1.A1_at	A	A1TS	POPTR_0014s14400	POPTR_0014s14400 (11)	scaffold_14:10562354-10563421(-) (11)	NA	NA	NA	AT1G10830.1	15-cis-zeta-carotene isomerase 	LOC_Os12g21710.1	"nnrU, putative, expressed"	Medtr4g147320.1	NnrU 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101393.1.A1_at	A	A1TS	POPTR_0009s14140	POPTR_0009s14140 (11)	scaffold_9:11147377-11147590(-) (11)	NA	Q9SDA8	F-box/LRR-repeat protein 10	AT2G17020.1	F-box/RNI-like superfamily protein 	LOC_Os03g04270.1	"OsFBL10 - F-box domain and LRR containing protein, expressed"	Medtr1g143330.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.101397.1.A1_at	A	A1TS	POPTR_0013s06540	POPTR_0013s06540 (10)	scaffold_13:5141191-5141679(-) (10)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G03620.1	MATE efflux family protein 	LOC_Os12g03260.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.1014.1.A1_at	A	A1TS	POPTR_0004s09010	POPTR_0004s09010 (11)	scaffold_4:7568922-7569270(+) (11)	NA	Q9FIZ7	5-oxoprolinase	AT5G37830.1	oxoprolinase 1 	LOC_Os01g73514.1	"5-oxoprolinase, putative, expressed"	Medtr4g121000.1	"Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.101405.1.A1_at	A	A1TS	POPTR_0008s09550	POPTR_0008s09550 (11)	scaffold_8:5911177-5911306(+) (11)	NA	Q9LMX4	Probable inactive purple acid phosphatase 1	AT1G13750.1	Purple acid phosphatases superfamily protein 	LOC_Os12g38760.2	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g073720.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.101413.1.S1_a_at	A	A1TS	POPTR_0003s13830	POPTR_0003s13830 (11)	scaffold_3:14094738-14095001(+) (11)	NA	NA	NA	AT1G64355.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3593 (InterPro:IPR021995); Has 301 Blast hits to 301 proteins in 96 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). 	LOC_Os05g49650.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101418.1.A1_at	A	A1TS	POPTR_0004s10520	POPTR_0004s10520 (9)	scaffold_4:9058562-9058956(-) (9)	NA	NA	NA	AT5G15900.1	TRICHOME BIREFRINGENCE-LIKE 19 	LOC_Os01g46400.1	expressed protein	Medtr5g036370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101423.1.A1_at	A	A1TS	POPTR_0001s29460	POPTR_0001s29460 (11)	scaffold_1:28133535-28133833(+) (11)	NA	P93732	Proline iminopeptidase	AT2G14260.1	proline iminopeptidase 	LOC_Os05g43830.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr2g010520.1	"Peptidase S33, prolyl aminopeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101439.1.A1_at	A	A1TS	POPTR_0011s10380	POPTR_0011s10380 (10)	scaffold_11:12816926-12817497(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101461.1.A1_at	A	A1MS	POPTR_0015s09450	POPTR_0015s09450 (9)	scaffold_15:10664878-10665094(-) (9)	NA	Q07123	Copper methylamine oxidase	AT2G42490.1	Copper amine oxidase family protein 	LOC_Os04g40040.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr3g114690.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.101467.1.S1_at	A	A1TS	POPTR_0014s18730	POPTR_0014s18730 (10)	scaffold_14:16103647-16104955(-) (10)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.101476.1.A1_s_at	A	A1TS	POPTR_0337s00210	POPTR_0337s00210 (11)	scaffold_337:10460-10655(+) (11)	NA	Q2HJ56	Periodic tryptophan protein 1 homolog	AT4G18905.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g69970.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g105580.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101485.1.A1_at	A	A1TS	POPTR_0015s07350	POPTR_0015s07350 (10)	scaffold_15:8520144-8520366(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1015.1.A1_at	A	A1TS	POPTR_0003s21380	POPTR_0003s21380 (11)	scaffold_3:19562818-19563999(-) (11)	NA	NA	NA	AT5G19860.1	"Protein of unknown function, DUF538 "	LOC_Os03g48710.1	expressed protein	Medtr4g133910.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101515.1.A1_at	A	A1MS	POPTR_0014s15600	POPTR_0014s15600 (11)	scaffold_14:11628517-11628689(+) (11)	NA	NA	NA	AT2G05755.1	Nodulin MtN21 /EamA-like transporter family protein 	NA	NA	Medtr3g110060.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.101522.1.A1_at	A	A1MS	POPTR_0004s13640	POPTR_0004s13640 (11)	scaffold_4:13996911-13997456(+) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101549.1.A1_at	A	A1TS	POPTR_0003s06300	POPTR_0003s06300 (11)	scaffold_3:7765417-7765781(-) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101550.1.A1_at	A	A1TS	POPTR_0015s09980	POPTR_0015s09980 (11)	scaffold_15:11046433-11046829(+) (11)	NA	NA	NA	AT1G24480.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g02600.1	"methyltransferase domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.101555.1.A1_at	A	A1TS	POPTR_0018s07340	POPTR_0018s07340 (11)	scaffold_18:7523822-7524008(+) (11)	NA	Q9LJP1	GDSL esterase/lipase 4	AT3G14225.1	GDSL-motif lipase 4 	LOC_Os09g04710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.10157.1.A1_a_at	A	A1TS	POPTR_0003s08240	POPTR_0003s08240 (11)	scaffold_3:9644786-9645195(-) (11)	NA	P0C5D6	Serine/threonine-protein kinase SAPK3	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os10g41490.1	"CAMK_CAMK_like.41 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10157.2.S1_at	A	A1TS	POPTR_0003s08240	POPTR_0003s08240 (11)	scaffold_3:9646885-9648141(-) (11)	NA	P0C5D6	Serine/threonine-protein kinase SAPK3	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os10g41490.1	"CAMK_CAMK_like.41 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.101592.1.S1_at	A	A1TS	POPTR_0015s13990	POPTR_0015s13990 (9)	scaffold_15:13741969-13742972(-) (9)	NA	NA	NA	AT5G51840.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g11060.1	"ACI13, putative, expressed"	Medtr1g129850.1	"ACI13, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101597.1.A1_at	A	A1MS	POPTR_0015s00980	POPTR_0015s00980 (11)	scaffold_15:572682-573765(+) (11)	NA	P09379	GTPase-activating protein GYP7	AT3G49350.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.101605.1.A1_at	A	A1TS	POPTR_0011s16830	POPTR_0011s16830 (11)	scaffold_11:18583576-18584078(-) (11)	POPTR_0001s47240 (7)	NA	NA	AT4G26490.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os08g38580.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g104320.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.101607.1.A1_at	A	A1TS	POPTR_0006s07090	POPTR_0006s07090 (11)	scaffold_6:5100426-5101211(+) (11)	NA	NA	NA	AT5G20590.1	TRICHOME BIREFRINGENCE-LIKE 5 	LOC_Os06g44900.1	"leaf senescence related protein, putative, expressed"	Medtr8g130160.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101617.1.A1_s_at	A	A1TS	POPTR_0009s07520	POPTR_0009s07520 (11)	scaffold_9:7022022-7024794(-) (11)	NA	Q38859	DNA-directed RNA polymerase II subunit RPB11	AT3G52090.1	"DNA-directed RNA polymerase, RBP11-like "	LOC_Os07g07610.1	"RNA polymerase subunit, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.101625.1.A1_at	A	A1TS	POPTR_0001s37150	POPTR_0001s37150 (11)	scaffold_1:35980615-35980932(-) (11)	NA	Q9LDH0	"Beta-(1,2)-xylosyltransferase"	AT5G55500.1	"beta-1,2-xylosyltransferase "	LOC_Os08g39380.1	"beta 1,2-xylosyltransferase, putative, expressed"	Medtr3g076770.1	"beta 1,2 xylosyltransferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101629.1.A1_at	A	A1TA	POPTR_0004s15370	POPTR_0004s15370 (11)	scaffold_4:16028074-16028312(-) (11)	NA	NA	NA	AT2G15900.1	"Phox-associated domain;Phox-like;Sorting nexin, C-terminal "	LOC_Os11g06040.1	"PX domain containing protein, putative, expressed"	Medtr4g128670.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.101631.1.A1_at	A	A1TS	POPTR_0002s10310	POPTR_0002s10310 (11)	scaffold_2:7404261-7404455(-) (11)	NA	Q9LTX2	Transport inhibitor response 1-like protein	AT5G49980.1	auxin F-box protein 5 	LOC_Os02g52230.1	"coronatine-insensitive protein 1, putative, expressed"	Medtr5g074580.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101636.1.A1_at	A	A1TS	POPTR_0006s15660	POPTR_0006s15660 (11)	scaffold_6:13125215-13125678(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101637.1.A1_at	A	A1TS	POPTR_0008s05890	POPTR_0008s05890 (11)	scaffold_8:3469773-3470268(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT3G55560.1	AT-hook protein of GA feedback 2 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	Medtr5g098890.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101639.1.A1_at	A	A1TS	POPTR_0004s08010	POPTR_0004s08010 (11)	scaffold_4:6551972-6552198(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101644.1.A1_at	A	A1TS	POPTR_0015s05290	POPTR_0015s05290 (11)	scaffold_15:5652932-5653473(-) (11)	NA	Q99685	Monoglyceride lipase	AT1G73480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g23150.1	"monoglyceride lipase, putative, expressed"	Medtr3g130390.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101646.1.A1_s_at	A	A2TS	POPTR_0001s27700	POPTR_0001s27700 (11)//POPTR_0001s27710 (11)	scaffold_1:26550439-26551129(-) (11)//scaffold_1:26569038-26569729(-) (11)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.101648.1.A1_at	A	A1TS	POPTR_0005s08470	POPTR_0005s08470 (11)	scaffold_5:5863761-5863803(-) (11)	NA	Q0WR59	Probable inactive receptor kinase At5g10020	AT5G10020.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g43350.1	expressed protein	Medtr3g145010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.101651.1.S1_at	A	A1TS	POPTR_0013s12140	POPTR_0013s12140 (11)	scaffold_13:12779298-12780166(+) (11)	NA	Q54I39	IST1-like protein	AT1G34220.2	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os08g07830.1	"DUF292 domain containing protein, expressed"	Medtr8g088790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101652.1.A1_at	A	A1TS	POPTR_0007s12640	POPTR_0007s12640 (11)	scaffold_7:12901745-12902247(+) (11)	NA	P29054	Transcription initiation factor IIB	AT4G36650.1	plant-specific TFIIB-related protein 	LOC_Os03g10070.1	"transcription initiation factor IIB, putative, expressed"	Medtr5g019800.1	Cyclin-like; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.101664.1.A1_at	A	A1TS	POPTR_0018s12650	POPTR_0018s12650 (11)	scaffold_18:13172166-13172221(-) (11)	POPTR_0004s12810 (7)//POPTR_0004s12760 (7)	Q9H9A5	CCR4-NOT transcription complex subunit 10	AT5G35430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g03600.1	"immunoglobulin/major histocompatibility complex, putative, expressed"	Medtr8g121410.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101664.1.A1_s_at	A	A1TS	POPTR_0018s12650	POPTR_0018s12650 (11)	scaffold_18:13172043-13172180(-) (11)//scaffold_6:4605946-4606051(-) (9)	POPTR_0004s12810 (6)//POPTR_0004s12760 (6)	Q9H9A5	CCR4-NOT transcription complex subunit 10	AT5G35430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g03600.1	"immunoglobulin/major histocompatibility complex, putative, expressed"	Medtr8g121410.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101665.1.A1_at	A	A1MS	POPTR_0015s04260	POPTR_0015s04260 (11)	scaffold_15:4316942-4317468(-) (11)	NA	Q54NA6	Myb-like protein L	AT3G18100.1	myb domain protein 4r1 	LOC_Os07g04700.1	"MYB family transcription factor, putative, expressed"	AC233685_2.1	Homeodomain-related; AC233685.2 1460-8854 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101668.1.A1_at	A	A1MS	POPTR_0008s20160	POPTR_0008s20160 (10)	scaffold_8:13951048-13951273(+) (10)	NA	Q8S9G8	Squamosa promoter-binding-like protein 7	AT5G18830.1	squamosa promoter binding protein-like 7 	LOC_Os05g33810.1	"OsSPL9 - SBP-box gene family member, expressed"	Medtr2g025690.1	SBP 	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0046872|metal ion binding	GO:0005634|nucleus
PtpAffx.101676.1.A1_at	A	A1TS	POPTR_0008s07920	POPTR_0008s07920 (11)	scaffold_8:4880536-4880781(+) (11)	NA	Q9Z160	Conserved oligomeric Golgi complex subunit 1	AT5G16300.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os01g56910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101679.1.A1_at	A	A1TS	POPTR_0009s14260	POPTR_0009s14260 (10)	scaffold_9:11216019-11216259(+) (10)	NA	O22265	"Signal recognition particle 43 kDa protein, chloroplastic"	AT2G47450.1	chloroplast signal recognition particle component (CAO) 	LOC_Os03g03990.1	"signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed"	NA	NA	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.101685.1.A1_s_at	A	A2TS	POPTR_0002s19540	POPTR_0002s19540 (11)//POPTR_0184s00210 (11)	scaffold_184:43297-43569(+) (11)//scaffold_2:15510725-15510997(-) (11)	NA	O22907	DEAD-box ATP-dependent RNA helicase 24	AT2G47330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g19530.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g133130.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.101690.1.A1_at	A	A1TA	POPTR_0002s01140	POPTR_0002s01140 (11)	scaffold_2:609207-609262(+) (11)	NA	NA	NA	AT5G42330.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101699.1.A1_a_at	A	A1TS	POPTR_0005s15640	POPTR_0005s15640 (11)	scaffold_5:12238137-12238936(-) (11)	NA	O35678	Monoglyceride lipase	AT5G16120.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g04620.1	"OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed"	AC233109_20.1	Alpha/beta hydrolase fold AC233109.4 76219-82338 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101700.1.A1_at	A	A1MS	POPTR_0005s01990	POPTR_0005s01990 (11)	scaffold_5:1290384-1290907(-) (11)	NA	Q8N9H8	Probable exonuclease mut-7 homolog	AT1G56310.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os05g28860.1	"3'-5' exonuclease, putative, expressed"	Medtr1g100330.1	"Polynucleotidyl transferase, Ribonuclease H fold "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.101712.1.A1_at	A	A1TS	POPTR_0010s06920	POPTR_0010s06920 (11)	scaffold_10:8154927-8155046(-) (11)	NA	Q944J0	Probable signal peptidase complex subunit 1	AT4G40042.1	Microsomal signal peptidase 12 kDa subunit (SPC12) 	LOC_Os12g25210.1	"signal peptidase complex subunit 1, putative"	Medtr3g103650.1	"Microsomal signal peptidase 12 kDa subunit; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0044260|cellular macromolecule metabolic process||GO:0006508|proteolysis||GO:0006465|signal peptide processing	GO:0008233|peptidase activity	GO:0005787|signal peptidase complex||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.101717.1.A1_at	A	A1TS	POPTR_0006s24500	POPTR_0006s24500 (11)	scaffold_6:23086829-23087100(-) (11)	NA	NA	NA	AT5G11890.1	FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g39290.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr3g139940.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.101723.1.A1_s_at	A	A1TS	POPTR_0001s06740	POPTR_0001s06740 (11)	scaffold_1:5171598-5173599(-) (11)	NA	NA	NA	AT5G06970.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101735.1.A1_at	A	A1MS	POPTR_0010s23230	POPTR_0010s23230 (10)	scaffold_10:19853481-19854013(+) (10)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G04250.2	Cysteine proteinases superfamily protein 	LOC_Os03g64219.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g120470.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101757.1.A1_s_at	A	A1TS	POPTR_0007s13210	POPTR_0007s13210 (11)	scaffold_7:13331997-13333507(+) (11)	NA	Q9SW44	DEAD-box ATP-dependent RNA helicase 16	AT4G34910.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g51900.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g099680.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.101759.1.A1_at	A	A1MS	POPTR_0002s11870	POPTR_0002s11870 (11)	scaffold_2:8807943-8808127(+) (11)	NA	Q84WW1	F-box protein At3g12350	AT3G12350.1	F-box family protein 	LOC_Os12g32630.1	"OsFBX448 - F-box domain containing protein, expressed"	Medtr1g023010.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101781.1.A1_at	A	A1TS	POPTR_0019s13560	POPTR_0019s13560 (11)	scaffold_19:14468103-14468532(+) (11)	NA	Q5QQ56	Xylosyltransferase 1	AT4G03340.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os08g04790.1	"xylosyltransferase, putative, expressed"	AC229695_3.1	"Glycosyl transferase, family 14 AC229695.5 13205-18395 E EGN_Mt090430 200"	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.101784.1.A1_at	A	A1TS	POPTR_0017s10650	POPTR_0017s10650 (11)	scaffold_17:10124029-10125000(-) (11)	NA	P57758	Cystinosin homolog	AT5G40670.1	PQ-loop repeat family protein / transmembrane family protein 	LOC_Os12g18110.1	"PQ loop repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101791.1.A1_at	A	A1TS	POPTR_0014s11520	POPTR_0014s11520 (10)	scaffold_14:8555130-8555657(+) (11)	NA	Q9ZSM8	Histone-lysine N-methyltransferase EZA1	AT4G02020.1	SET domain-containing protein 	LOC_Os03g19480.1	"SET domain containing protein, expressed"	Medtr1g106640.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101806.1.A1_at	A	A1TS	POPTR_0006s28040	POPTR_0006s28040 (11)	scaffold_6:25893130-25893677(+) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT4G31840.1	early nodulin-like protein 15 	LOC_Os02g06670.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g138410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.101846.1.A1_at	A	A1TS	POPTR_0009s16090	POPTR_0009s16090 (11)	scaffold_9:12314150-12314969(-) (11)	NA	Q5R4J1	"Tryptophanyl-tRNA synthetase, cytoplasmic"	AT3G04600.3	Nucleotidylyl transferase superfamily protein 	LOC_Os12g35570.1	"tRNA synthetase, putative, expressed"	AC202489_14.1	"Aminoacyl-tRNA synthetase, class Ib AC202489.10 90501-83889 E EGN_Mt090430 200"	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.101875.1.A1_s_at	A	A1TS	POPTR_0008s04170	POPTR_0008s04170 (11)	scaffold_8:2335746-2335895(-) (11)	NA	NA	NA	AT4G25030.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g43060.1	expressed protein	Medtr1g121550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101899.1.A1_at	A	A1TS	POPTR_0014s06190	POPTR_0014s06190 (11)	scaffold_14:4707659-4708203(-) (11)	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os10g40740.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.101914.1.A1_at	A	A1TS	POPTR_0005s08640	POPTR_0005s08640 (11)	scaffold_5:6011838-6012193(-) (11)	NA	O65012	Cytochrome P450 78A4	AT5G09970.1	"cytochrome P450, family 78, subfamily A, polypeptide 7 "	LOC_Os10g26340.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.101918.1.A1_at	A	A1MS	POPTR_0009s04740	POPTR_0009s04740 (11)	scaffold_9:5016417-5016688(-) (11)	NA	Q56078	Periplasmic beta-glucosidase	AT3G47000.1	Glycosyl hydrolase family protein 	LOC_Os05g37700.1	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr5g078320.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.101921.1.A1_at	A	A1TS	POPTR_0008s14610	POPTR_0008s14610 (11)	scaffold_8:9703552-9704043(+) (11)	NA	NA	NA	AT1G70200.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g22070.1	expressed protein	Medtr5g036560.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.101921.1.A1_s_at	A	A1TS	POPTR_0008s14610	POPTR_0008s14610 (11)	scaffold_8:9703612-9704186(+) (11)	NA	NA	NA	AT1G70200.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g22070.1	expressed protein	Medtr5g036560.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.101922.1.A1_at	A	A1TS	POPTR_0017s01380	POPTR_0017s01380 (10)	scaffold_17:956280-957876(-) (10)	NA	Q6R0H1	Protein LHY	AT5G17300.1	Homeodomain-like superfamily protein 	LOC_Os04g49450.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101934.1.A1_at	A	A1TS	POPTR_0019s08240	POPTR_0019s08240 (11)	scaffold_19:9703404-9703523(-) (11)	NA	Q9XFH9	"Thioredoxin F2, chloroplastic"	AT5G16400.1	thioredoxin F2 	LOC_Os01g68480.1	"thioredoxin, putative, expressed"	Medtr7g089880.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.101940.1.A1_at	A	A1TS	POPTR_0016s14110	POPTR_0016s14110 (10)	scaffold_16:13342555-13343042(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101944.1.A1_at	A	A1MS	POPTR_0006s24130	POPTR_0006s24130 (11)	scaffold_6:22809226-22809447(+) (11)	NA	NA	NA	AT1G76940.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g05530.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g139670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.101954.1.A1_a_at	A	A1TS	POPTR_0017s13960	POPTR_0017s13960 (11)	scaffold_17:14114127-14114234(-) (11)	NA	NA	NA	AT1G18700.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os07g43870.3	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.101954.2.A1_at	A	A1TS	POPTR_0017s13960	POPTR_0017s13960 (11)	scaffold_17:14114336-14118268(-) (11)	NA	NA	NA	AT1G18700.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os07g43870.3	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.101954.2.A1_s_at	A	A1TS	POPTR_0017s13960	POPTR_0017s13960 (11)	scaffold_17:14114245-14118376(-) (11)	NA	NA	NA	AT1G18700.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os07g43870.3	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.10196.3.A1_a_at	A	A1TS	POPTR_0006s08410	POPTR_0006s08410 (10)	scaffold_6:6120376-6120884(-) (10)	NA	Q8BYK4	Retinol dehydrogenase 12	AT2G37540.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g05840.2	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.101967.1.A1_at	A	A1TS	POPTR_0014s10010	POPTR_0014s10010 (11)	scaffold_14:7502485-7502919(+) (11)	NA	Q9MAM3	3-ketoacyl-CoA synthase 1	AT1G01120.1	3-ketoacyl-CoA synthase 1 	LOC_Os05g49900.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr7g146040.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.101977.1.A1_s_at	A	A1TS	POPTR_0012s01170	POPTR_0012s01170 (11)	scaffold_12:804572-805588(-) (11)	NA	NA	NA	AT5G52950.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g12250.1	expressed protein	Medtr8g068100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101979.1.A1_at	A	A1MS	POPTR_0006s23600	POPTR_0006s23600 (10)	scaffold_6:22313402-22313828(+) (10)	NA	B2JQW2	2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	AT4G33180.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g42140.1	"hydrolase protein, putative, expressed"	Medtr3g139140.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101988.1.A1_at	A	A1TS	POPTR_0010s24240	POPTR_0010s24240 (11)	scaffold_10:20548606-20549076(-) (11)	NA	NA	NA	AT5G04670.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os02g01020.1	expressed protein	Medtr1g117100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101999.1.S1_s_at	A	A1TS	POPTR_0005s10940	POPTR_0005s10940 (11)	scaffold_5:7867339-7872876(-) (11)	NA	P18616	DNA-directed RNA polymerase II subunit RPB1	AT4G35800.1	RNA polymerase II large subunit 	LOC_Os05g05860.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g023000.1	"Protein kinase; RNA polymerase Rpb1, domain 6 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006366|transcription from RNA polymerase II promoter	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	"GO:0005665|""DNA-directed RNA polymerase II, core complex"""
PtpAffx.102.1.A1_at	A	A1MS	POPTR_0004s00430	POPTR_0004s00430 (10)	scaffold_4:144198-144991(+) (11)	NA	P43254	E3 ubiquitin-protein ligase COP1	AT2G32950.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g53140.1	"COP1, putative, expressed"	Medtr5g092630.1	"Zinc finger, RING-type; WD40-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102005.1.A1_at	A	A1TS	POPTR_0001s05500	POPTR_0001s05500 (10)	scaffold_1:4220309-4220386(-) (10)	NA	Q9C690	Transcription factor bHLH122	AT1G51140.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr2g117830.2	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102012.1.A1_at	A	A1TS	POPTR_0012s10640	POPTR_0012s10640 (11)	scaffold_12:11354815-11355292(-) (11)	NA	P29136	Metalloendoproteinase 1	AT1G24140.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g037460.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.102022.1.A1_at	A	A1TS	POPTR_0002s10540	POPTR_0002s10540 (11)	scaffold_2:7629932-7630301(-) (11)	NA	O80674	Transcription factor bHLH106	AT2G41130.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr5g075080.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102029.1.A1_at	A	A1TA	POPTR_0014s12930	POPTR_0014s12930 (11)	scaffold_14:9521376-9521921(+) (11)	NA	Q570C0	Protein TRANSPORT INHIBITOR RESPONSE 1	AT3G62980.1	F-box/RNI-like superfamily protein 	LOC_Os04g32460.2	"OsFBL16 - F-box domain and LRR containing protein, expressed"	Medtr7g096650.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102031.1.A1_a_at	A	A1TS	POPTR_0010s24520	POPTR_0010s24520 (11)	scaffold_10:20704340-20704714(+) (11)	NA	P76093	Uncharacterized protein ynbD	NA	NA	LOC_Os01g64010.2	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.102032.1.A1_s_at	A	A1TS	POPTR_0007s02800	POPTR_0007s02800 (11)	scaffold_7:1623793-1624229(+) (11)	NA	NA	NA	AT1G61730.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os09g27850.1	"transcription regulator, putative, expressed"	Medtr7g140470.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102036.1.A1_at	A	A1MS	POPTR_0025s00610	POPTR_0025s00610 (11)	scaffold_25:297992-298772(+) (11)	NA	Q9LEW0	Ubiquitin carboxyl-terminal hydrolase 22	AT5G10790.1	ubiquitin-specific protease 22 	LOC_Os04g55360.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g121930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.102038.1.A1_at	A	A1TS	POPTR_0011s12300	POPTR_0011s12300 (11)	scaffold_11:15041120-15041645(-) (11)	NA	Q41249	"Protochlorophyllide reductase, chloroplastic"	AT5G54190.1	protochlorophyllide oxidoreductase A 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	Medtr7g118280.1	"Retinol dehydrogenase 12, related "	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.102068.1.A1_at	A	A1TS	POPTR_0010s10090	POPTR_0010s10090 (11)	scaffold_10:10671781-10672240(+) (11)	NA	NA	NA	AT5G26230.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g32440.1	expressed protein	Medtr5g006090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102073.1.A1_s_at	A	A1TS	POPTR_0009s16570	POPTR_0009s16570 (11)	scaffold_9:12547693-12548181(-) (11)	NA	P73456	Cell division protein ftsZ	AT2G36250.2	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.102078.1.A1_at	A	A1TS	POPTR_0001s17900	POPTR_0001s17900 (11)	scaffold_1:14815394-14815743(-) (11)	NA	P61817	Sirohydrochlorin ferrochelatase	AT1G50170.1	sirohydrochlorin ferrochelatase B 	LOC_Os02g19440.1	"sirohydrochlorin ferrochelatase, putative, expressed"	Medtr6g005330.2	Cobalamin (vitamin B12) biosynthesis CbiX protein 	GO:0009236|cobalamin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity||GO:0046872|metal ion binding	NA
PtpAffx.102081.1.A1_at	A	A1MS	POPTR_0004s05420	POPTR_0004s05420 (10)	scaffold_4:4175810-4176173(-) (10)	NA	NA	NA	AT2G34070.1	TRICHOME BIREFRINGENCE-LIKE 37 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr2g019150.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1021.1.A1_at	A	A1TS	POPTR_0001s08210	POPTR_0001s08210 (11)	scaffold_1:6272689-6273007(-) (11)	NA	Q9SZ69	Zinc finger A20 and AN1 domain-containing stress-associated protein 7	AT4G12040.2	A20/AN1-like zinc finger family protein 	LOC_Os02g10200.2	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g127110.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.10210.1.S1_at	A	A1TS	POPTR_0003s12160	POPTR_0003s12160 (11)	scaffold_3:12831960-12832376(-) (11)	NA	P46280	"Elongation factor Tu, chloroplastic"	AT4G20360.1	RAB GTPase homolog E1B 	LOC_Os02g38210.1	"elongation factor Tu, putative, expressed"	Medtr3g115100.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.102124.1.A1_at	A	A1TS	POPTR_0009s02210	POPTR_0009s02210 (11)	scaffold_9:2930146-2933623(-) (11)	NA	P53145	Large subunit GTPase 1	AT1G08410.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g42370.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g067030.1	Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.102128.1.A1_at	A	A1TS	POPTR_0008s01780	POPTR_0008s01780 (11)	scaffold_8:840317-840646(-) (11)	NA	Q9LZR8	PAN domain-containing protein At5g03700	AT5G03700.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os02g32620.1	"PAN domain-containing protein At5g03700 precursor, putative, expressed"	Medtr7g126630.1	Curculin-like (mannose-binding) lectin; N/apple PAN 	NA	GO:0005529|sugar binding	NA
PtpAffx.102133.1.A1_s_at	A	A1TS	POPTR_0005s10470	POPTR_0005s10470 (11)	scaffold_5:7519081-7520645(+) (11)	NA	NA	NA	AT2G17550.1	unknown protein; Has 264 Blast hits to 258 proteins in 65 species: Archae - 5; Bacteria - 5; Metazoa - 66; Fungi - 16; Plants - 107; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os03g03860.3	expressed protein	Medtr5g024230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102136.1.A1_at	A	A1TS	POPTR_0008s01480	POPTR_0008s01480 (11)	scaffold_8:720085-720293(+) (11)	NA	Q8LEU3	"Chlorophyll(ide) b reductase NOL, chloroplastic"	AT5G04900.1	NYC1-like 	LOC_Os03g45194.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g099660.2	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.102136.1.A1_s_at	A	A1TS	POPTR_0008s01480	POPTR_0008s01480 (11)	scaffold_8:718479-719956(+) (11)	NA	Q8LEU3	"Chlorophyll(ide) b reductase NOL, chloroplastic"	AT5G04900.1	NYC1-like 	LOC_Os03g45194.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g099660.2	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.102140.1.A1_at	A	A1TS	POPTR_0014s15590	POPTR_0014s15590 (11)	scaffold_14:11604711-11605195(-) (11)	NA	O48766	Endoglucanase 11	AT2G32990.1	glycosyl hydrolase 9B8 	LOC_Os02g50490.1	"endoglucanase, putative, expressed"	Medtr5g093090.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.102143.1.A1_s_at	A	A1TS	POPTR_0001s11780	POPTR_0001s11780 (10)	scaffold_1:9141735-9142185(+) (10)	NA	Q8VY90	Ethylene-responsive transcription factor ERF105	AT5G51190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.102162.1.A1_at	A	A1TS	POPTR_0014s08290	POPTR_0014s08290 (11)	scaffold_14:6160860-6161221(-) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT4G00335.2	RING-H2 finger B1A 	LOC_Os11g18947.2	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_12.1	"Zinc finger, RING-type AC235567.1 46372-52293 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102169.1.A1_at	A	A1TS	POPTR_0005s07140	POPTR_0005s07140 (11)	scaffold_5:4792127-4792393(-) (11)	NA	Q9MA92	Filament-like plant protein 3	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os07g32340.3	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102170.1.A1_at	A	A1TS	POPTR_0012s07420	POPTR_0012s07420 (10)	scaffold_12:8350933-8351393(+) (10)	NA	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os07g09580.1	"aminoacyl-tRNA synthetase, putative, expressed"	AC233677_23.1	"aminoacyl-tRNA synthetase, putative AC233677.2 135287-140524 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102182.1.A1_at	A	A2TS	POPTR_0013s13990	POPTR_0013s13990 (11)//POPTR_0013s14000 (11)	scaffold_13:14295556-14295591(+) (11)//scaffold_13:14296372-14296407(+) (11)//scaffold_13:14304848-14304883(+) (11)	NA	Q9LEL6	(RS)-norcoclaurine 6-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os05g43930.1	"O-methyltransferase, putative, expressed"	Medtr4g047310.1	"Blue (type 1) copper domain; O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.102186.1.A1_s_at	A	A2TS	POPTR_0017s03350	POPTR_0017s03350 (11)//POPTR_0017s00760 (9)	scaffold_17:546693-546789(-) (11)//scaffold_17:2462181-2462277(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g29790.1	"receptor kinase, putative"	Medtr5g026330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.102205.1.A1_at	A	A1TS	POPTR_0019s04860	POPTR_0019s04860 (10)	scaffold_19:5103843-5103972(-) (10)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr7g100310.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.102211.1.A1_s_at	A	A1TS	POPTR_0014s18540	POPTR_0014s18540 (11)	scaffold_14:15852338-15852700(+) (11)	NA	NA	NA	AT4G28760.2	Protein of unknown function (DUF3741) 	LOC_Os03g04990.1	expressed protein	Medtr7g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102216.1.A1_s_at	A	A1TS	POPTR_0001s16640	POPTR_0001s16640 (11)	scaffold_1:13418879-13419524(-) (11)	NA	Q9LMA8	Protein TIFY 10A	AT1G19180.1	jasmonate-zim-domain protein 1 	LOC_Os03g28940.1	"ZIM domain containing protein, putative, expressed"	Medtr2g049880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102231.1.A1_at	A	A1TS	POPTR_0003s19320	POPTR_0003s19320 (11)	scaffold_3:18085214-18085700(-) (11)	NA	NA	NA	AT3G12320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	NA	NA	Medtr8g044020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102238.1.A1_s_at	A	A1TS	POPTR_0002s20920	POPTR_0002s20920 (11)	scaffold_2:17149583-17149675(-) (11)	NA	NA	NA	AT1G02960.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 100 Blast hits to 99 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 26; Fungi - 13; Plants - 29; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). 	LOC_Os02g48116.1	expressed protein	Medtr3g106950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102252.1.S1_at	A	A1TS	POPTR_0006s27440	POPTR_0006s27440 (11)	scaffold_6:25343392-25344417(-) (11)	NA	Q6DJ03	Protein MEMO1	AT2G25280.1	"CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). "	LOC_Os08g20270.2	"MEMO1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102270.1.A1_at	A	A1TS	POPTR_0003s13510	POPTR_0003s13510 (11)	scaffold_3:13894160-13894652(+) (11)	NA	NA	NA	AT3G61600.1	POZ/BTB containin G-protein 1 	LOC_Os02g16000.1	"E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.102281.1.A1_at	A	A1TA	POPTR_0017s07100	POPTR_0017s07100 (11)	scaffold_17:5501514-5506131(+) (11)	NA	NA	NA	AT5G27780.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37430.1	OsSAUR48 - Auxin-responsive SAUR gene family member	Medtr4g098320.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102298.1.S1_at	A	A1TS	POPTR_0002s23450	POPTR_0002s23450 (11)	scaffold_2:20971978-20973014(+) (11)	NA	NA	NA	AT5G16490.1	ROP-interactive CRIB motif-containing protein 4 	LOC_Os03g63060.1	"P21-Rho-binding domain containing protein, putative, expressed"	Medtr7g021460.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1023.1.S1_at	A	A1TS	POPTR_0018s13980	POPTR_0018s13980 (11)	scaffold_18:14240728-14241564(+) (11)	NA	NA	NA	AT2G19180.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g13320.1	expressed protein	Medtr2g042680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102306.1.A1_at	A	A1TA	POPTR_0003s21080	POPTR_0003s21080 (11)	scaffold_3:19378832-19379254(-) (11)	NA	P28752	Tubulin alpha-1 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.102308.1.A1_at	A	A1MS	POPTR_0005s01720	POPTR_0005s01720 (10)	scaffold_5:1151355-1152754(+) (10)	NA	Q9FP29	Homeobox protein knotted-1-like 1	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os01g19694.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.102308.2.A1_at	A	A1TS	POPTR_0013s01000	POPTR_0013s01000 (9)	scaffold_13:545920-546128(+) (9)	NA	Q9FP29	Homeobox protein knotted-1-like 1	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os01g19694.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.102311.1.A1_at	A	A1TS	POPTR_0014s14320	POPTR_0014s14320 (11)	scaffold_14:10486688-10487178(+) (11)	NA	NA	NA	AT4G14200.1	Pentatricopeptide repeat (PPR) superfamily protein 	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.102316.1.S1_a_at	A	A2TS	POPTR_0006s00740	POPTR_0006s00740 (11)//POPTR_0016s00790 (11)	scaffold_16:294652-294827(+) (11)//scaffold_6:390728-390903(+) (11)	NA	NA	NA	AT5G47635.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g14194.1	"POEI28 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102316.1.S1_at	A	A1TS	POPTR_0006s00740	POPTR_0006s00740 (11)	scaffold_6:388884-390782(+) (11)	NA	NA	NA	AT5G47635.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g14194.1	"POEI28 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102317.1.A1_at	A	A1TS	POPTR_0006s12930	POPTR_0006s12930 (11)	scaffold_6:10191401-10192049(+) (11)	NA	Q653H7	Auxin response factor 18	AT4G30080.1	auxin response factor 16 	LOC_Os06g47150.3	"auxin response factor 18, putative, expressed"	Medtr2g110140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.102322.1.A1_at	A	A1TS	POPTR_0005s23730	POPTR_0005s23730 (10)	scaffold_5:22491705-22492147(+) (10)	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT3G63400.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.102330.1.A1_s_at	A	A1TS	POPTR_0008s02650	POPTR_0008s02650 (11)	scaffold_8:1340964-1341316(-) (11)	NA	Q9LZR3	Glucomannan 4-beta-mannosyltransferase 9	AT5G03760.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr1g073500.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102341.1.A1_at	A	A1TS	POPTR_0010s25890	POPTR_0010s25890 (11)	scaffold_10:21344563-21345230(-) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102341.2.A1_at	A	A1TS	POPTR_0010s25900	POPTR_0010s25900 (11)	scaffold_10:21350554-21350592(-) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102341.3.A1_x_at	A	A1TS	POPTR_0008s00660	POPTR_0008s00660 (11)	scaffold_8:301742-302468(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102342.1.A1_at	A	A1TS	POPTR_0011s16910	POPTR_0011s16910 (10)	scaffold_11:18632566-18633015(+) (10)	NA	Q1LUT1	Enhancer of mRNA-decapping protein 4	AT3G13300.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g080420.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102351.1.A1_at	A	A1TS	POPTR_0015s10610	POPTR_0015s10610 (11)	scaffold_15:11474393-11474647(-) (11)	NA	Q14746	Conserved oligomeric Golgi complex subunit 2	AT4G24840.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g63250.1	"brefeldin A-sensitive Golgi protein-like, putative, expressed"	Medtr8g109320.1	"COG complex component, COG2 "	GO:0007030|Golgi organization||GO:0015031|protein transport	NA	GO:0016020|membrane
PtpAffx.102352.1.A1_at	A	A1TS	POPTR_0012s14780	POPTR_0012s14780 (11)	scaffold_12:14533249-14533284(+) (11)	NA	Q93Y22	Coatomer subunit delta	AT5G05010.2	clathrin adaptor complexes medium subunit family protein 	LOC_Os05g24601.1	"coatomer subunit delta, putative, expressed"	Medtr2g122280.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.102352.1.A1_s_at	A	A1TS	POPTR_0012s14780	POPTR_0012s14780 (11)	scaffold_12:14533196-14533252(+) (11)	NA	Q93Y22	Coatomer subunit delta	AT5G05010.2	clathrin adaptor complexes medium subunit family protein 	LOC_Os05g24601.1	"coatomer subunit delta, putative, expressed"	Medtr2g122280.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.102356.1.A1_at	A	A1TS	POPTR_0019s08910	POPTR_0019s08910 (11)	scaffold_19:10339539-10339629(-) (9)//scaffold_19:10477449-10477597(-) (11)//scaffold_780:6903-6993(-) (9)	NA	Q149N8	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076800.1	"SNF2-related; Zinc finger, RING-type; Claudin tight junction protein; Zinc finger, FYVE/PHD-type; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.102357.1.A1_s_at	A	A1TS	POPTR_0001s08000	POPTR_0001s08000 (11)	scaffold_1:6053652-6055057(-) (11)	NA	Q8VYP5	Probable S-acyltransferase At3g60800	AT3G60800.1	DHHC-type zinc finger family protein 	LOC_Os03g58960.1	"DHHC zinc finger domain containing protein, expressed"	Medtr4g024940.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.102357.2.A1_at	A	A1TS	POPTR_0003s11520	POPTR_0003s11520 (11)	scaffold_3:12283378-12283595(-) (11)	NA	Q8VYP5	Probable S-acyltransferase At3g60800	AT3G60800.1	DHHC-type zinc finger family protein 	LOC_Os03g58960.1	"DHHC zinc finger domain containing protein, expressed"	Medtr4g024940.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.102365.1.A1_s_at	A	A1TS	POPTR_0008s04330	POPTR_0008s04330 (11)	scaffold_8:2424830-2425212(+) (11)	NA	Q4V9P0	S-adenosylmethionine mitochondrial carrier protein	AT2G35800.1	mitochondrial substrate carrier family protein 	LOC_Os11g01270.1	"mitochondrial substrate carrier family protein, putative, expressed"	Medtr1g122080.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102386.1.A1_at	A	A1TS	POPTR_0004s22050	POPTR_0004s22050 (9)	scaffold_4:20985676-20985708(-) (9)	NA	NA	NA	AT2G28410.1	unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g110400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102389.2.S1_a_at	A	A1TS	POPTR_0003s13190	POPTR_0003s13190 (11)	scaffold_3:13582943-13583480(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT1G63910.1	myb domain protein 103 	LOC_Os08g05520.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g010100.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102390.1.A1_at	A	A1TA	POPTR_0011s14520	POPTR_0011s14520 (10)	scaffold_11:16883654-16883840(-) (10)	NA	Q6Y2X3	DnaJ homolog subfamily C member 14	AT1G79030.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g41820.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g077040.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.102402.1.A1_at	A	A1TS	POPTR_0003s09740	POPTR_0003s09740 (11)	scaffold_3:10979526-10979955(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g028080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102402.2.A1_a_at	A	A1MS	POPTR_0003s09740	POPTR_0003s09740 (11)	scaffold_3:10980345-10981239(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g028080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102412.1.A1_at	A	A1TA	POPTR_0002s14360	POPTR_0002s14360 (9)	scaffold_2:10637174-10637474(-) (9)	NA	P28769	T-complex protein 1 subunit alpha	AT3G20050.1	T-complex protein 1 alpha subunit 	LOC_Os04g46620.1	"T-complex protein, putative, expressed"	Medtr4g136760.1	"T-complex protein 1, alpha subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.102425.1.A1_at	A	A1TS	POPTR_0006s22430	POPTR_0006s22430 (11)	scaffold_6:21439435-21439869(-) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT3G11590.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). 	LOC_Os04g31400.1	expressed protein	Medtr2g107440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102427.1.A1_at	A	A1TS	POPTR_0013s00710	POPTR_0013s00710 (10)	scaffold_13:348097-348493(+) (10)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.102427.1.A1_s_at	A	A1TS	POPTR_0013s00710	POPTR_0013s00710 (11)	scaffold_13:348161-348396(+) (11)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.102441.1.S1_s_at	A	A1TS	POPTR_0001s37470	POPTR_0001s37470 (11)	scaffold_1:36449503-36449780(+) (11)	NA	NA	NA	AT5G55610.1	"unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os12g31490.1	expressed protein	Medtr4g129710.1	"receptor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102451.1.S1_s_at	A	A1TS	POPTR_0017s06600	POPTR_0017s06600 (11)	scaffold_17:5009383-5012097(-) (11)	NA	Q58DF3	TraB domain-containing protein	AT1G05270.1	TraB family protein 	LOC_Os05g42010.1	"TraB family protein, putative, expressed"	Medtr6g059350.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102452.1.S1_s_at	A	A1TS	POPTR_0002s00330	POPTR_0002s00330 (11)	scaffold_2:82923-83137(+) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT1G76660.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). 	LOC_Os01g01390.4	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10247.1.A1_a_at	A	A2TS	POPTR_0006s11320	POPTR_0016s14870 (11)//POPTR_0006s11320 (11)	scaffold_16:13978345-13978391(-) (11)//scaffold_6:8590013-8590059(-) (11)	NA	Q9SVG9	Calcium-binding protein CML42	AT4G20780.1	calmodulin like 42 	LOC_Os03g21380.2	"OsCML27 - Calmodulin-related calcium sensor protein, expressed"	Medtr7g080780.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10247.1.A1_at	A	A1TS	POPTR_0006s11320	POPTR_0006s11320 (11)	scaffold_6:8589655-8590103(-) (11)	NA	Q9SVG9	Calcium-binding protein CML42	AT4G20780.1	calmodulin like 42 	LOC_Os03g21380.2	"OsCML27 - Calmodulin-related calcium sensor protein, expressed"	Medtr7g080780.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10247.2.S1_at	A	A1TS	POPTR_0016s14870	POPTR_0016s14870 (11)	scaffold_16:13977952-13978462(-) (11)	NA	Q9SVG9	Calcium-binding protein CML42	AT4G20780.1	calmodulin like 42 	LOC_Os03g21380.2	"OsCML27 - Calmodulin-related calcium sensor protein, expressed"	Medtr7g080780.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102470.1.S1_at	A	A1TS	POPTR_0019s03170	POPTR_0019s03170 (11)	scaffold_19:3188480-3188844(+) (11)	NA	Q8LDC8	Ethylene-responsive transcription factor 1B	AT3G23240.1	ethylene response factor 1 	LOC_Os03g64260.1	"AP2 domain containing protein, expressed"	Medtr1g042600.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.102478.1.A1_at	A	A1TS	POPTR_0005s16180	POPTR_0005s16180 (11)	scaffold_5:12858088-12859019(+) (11)	NA	P36859	Nitrate reductase [NADH]	AT1G37130.1	nitrate reductase 2 	LOC_Os08g36480.1	"nitrate reductase, putative, expressed"	Medtr3g098350.1	Mo-co oxidoreductase dimerisation domain 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0030151|molybdenum ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.102489.1.S1_a_at	A	A1MS	POPTR_0005s10270	POPTR_0005s10270 (9)	scaffold_11:7948343-7948421(-) (11)//scaffold_5:7357690-7357759(+) (9)	NA	Q8W2B8	Serine acetyltransferase 4	AT4G35640.1	serine acetyltransferase 3;2 	LOC_Os03g04140.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g023630.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
PtpAffx.1025.1.A1_x_at	A	A1TS	POPTR_0012s03490	POPTR_0012s03490 (11)	scaffold_12:2746331-2747299(-) (10)	NA	P20290	Transcription factor BTF3	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1025.10.S1_a_at	A	A1TS	POPTR_0009s15490	POPTR_0009s15490 (11)	scaffold_9:11969988-11970653(+) (11)	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1025.10.S1_at	A	A1TS	POPTR_0009s15490	POPTR_0009s15490 (11)	scaffold_9:11969813-11970729(+) (11)	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1025.12.S1_at	A	A1TS	POPTR_0017s10630	POPTR_0017s10630 (11)	scaffold_17:10111885-10113666(+) (11)	NA	Q9FJI5	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
PtpAffx.1025.17.S1_at	A	A1TS	POPTR_0006s28550	POPTR_0006s28550 (10)	scaffold_6:26224161-26224428(+) (10)	NA	Q54YK1	Putative UDP-sugar transporter DDB_G0278631	AT4G31600.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os06g08860.1	"transporter family protein, putative, expressed"	Medtr3g133130.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1025.2.A1_x_at	A	A1TS	POPTR_0004s20220	POPTR_0004s20220 (10)	scaffold_4:19843970-19844305(+) (11)	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1025.23.A1_at	A	A1MS	POPTR_0012s03490	POPTR_0012s03490 (10)	scaffold_12:2746769-2746961(-) (10)	NA	P20290	Transcription factor BTF3	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1025.4.A1_a_at	A	A1TS	POPTR_0015s05470	POPTR_0015s05470 (11)	scaffold_15:5818868-5819069(+) (11)	NA	P20290	Transcription factor BTF3	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1025.4.A1_at	A	A1TS	POPTR_0015s05470	POPTR_0015s05470 (11)	scaffold_15:5818434-5819313(+) (11)	NA	P20290	Transcription factor BTF3	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102575.1.S1_at	A	A1TS	POPTR_0010s12060	POPTR_0010s12060 (11)	scaffold_10:12155388-12155977(-) (11)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102588.1.A1_at	A	A1TS	POPTR_0001s01960	POPTR_0001s01960 (11)	scaffold_1:1432880-1433329(+) (11)	NA	Q9FVR6	"Uncharacterized protein At1g32220, chloroplastic"	AT1G32220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g33060.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g029140.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1026.1.S1_a_at	A	A5TS	POPTR_0014s06020	POPTR_0176s00240 (11)//POPTR_0176s00220 (11)//POPTR_0014s06020 (11)//POPTR_1353s00200 (11)//POPTR_0366s00210 (11)	scaffold_1353:2285-2504(+) (11)//scaffold_1353:3742-3962(+) (11)//scaffold_14:4501638-4501857(-) (11)//scaffold_176:22673-22892(-) (11)//scaffold_176:33974-34193(-) (11)//scaffold_366:5484-5703(-) (11)	NA	Q5PP62	SPX domain-containing protein 3	AT2G45130.1	SPX domain gene 3 	LOC_Os03g29250.1	"SPX domain-containing protein, putative, expressed"	Medtr8g120400.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1026.2.A1_at	A	A1TS	POPTR_0176s00220	POPTR_0176s00220 (11)	scaffold_176:22255-22666(-) (11)	NA	Q5PP62	SPX domain-containing protein 3	AT2G45130.1	SPX domain gene 3 	LOC_Os03g29250.1	"SPX domain-containing protein, putative, expressed"	Medtr8g120400.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10261.1.S1_a_at	A	A2TS	POPTR_0006s00810	POPTR_0016s01940 (11)//POPTR_0006s00810 (11)	scaffold_16:887581-887696(-) (11)//scaffold_6:451885-452000(+) (11)	NA	NA	NA	AT4G39720.1	VQ motif-containing protein 	LOC_Os09g20460.1	"VQ domain containing protein, putative, expressed"	Medtr4g089730.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10261.1.S1_at	A	A1TS	POPTR_0016s01940	POPTR_0016s01940 (11)	scaffold_16:887408-887857(-) (11)	NA	NA	NA	AT4G39720.1	VQ motif-containing protein 	LOC_Os08g31660.1	"VQ domain containing protein, putative, expressed"	Medtr4g089730.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10261.2.A1_at	A	A1TS	POPTR_0006s00810	POPTR_0006s00810 (9)	scaffold_6:451693-452119(+) (9)	NA	NA	NA	AT4G39720.1	VQ motif-containing protein 	LOC_Os09g20460.1	"VQ domain containing protein, putative, expressed"	Medtr4g089730.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102614.1.S1_at	A	A1TS	POPTR_0001s32490	POPTR_0001s32490 (10)	scaffold_1:30810015-30810858(-) (10)	NA	Q9ZTS1	Probable methionyl-tRNA synthetase	AT4G13780.1	"methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative "	LOC_Os06g31210.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.102643.1.S1_s_at	A	A1TS	POPTR_0003s11080	POPTR_0003s11080 (11)	scaffold_3:11940612-11941059(+) (11)	NA	Q05085	Nitrate transporter 1.1	AT1G12110.1	nitrate transporter 1.1 	LOC_Os08g05910.1	"peptide transporter PTR2, putative, expressed"	Medtr5g012420.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.102670.1.S1_at	A	A1TS	POPTR_0010s21030	POPTR_0010s21030 (10)	scaffold_10:18465570-18467749(+) (10)	NA	Q9M2T1	AP3-complex subunit beta-A	AT3G55480.2	protein affected trafficking 2 	LOC_Os01g74180.1	"adaptin, putative, expressed"	Medtr5g087340.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.102687.3.A1_s_at	A	A1TA	POPTR_0001s45090	POPTR_0001s45090 (10)	scaffold_1:42158375-42158424(+) (11)//scaffold_1:42267723-42267772(+) (10)//scaffold_1:42451940-42451989(+) (11)//scaffold_1:42509935-42509984(+) (11)//scaffold_1:42526742-42526791(+) (11)//scaffold_1:43972479-43972526(-) (9)//scaffold_1:45400797-45400843(-) (10)//scaffold_1:47991244-47991293(+) (11)//scaffold_1:48188054-48188103(+) (11)//scaffold_13:5259754-5259800(+) (10)//scaffold_2990:329-378(+) (11)//scaffold_49:78735-78781(+) (10)//scaffold_49:111564-111613(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1027.1.A1_a_at	A	A2TS	POPTR_0001s08640	POPTR_0001s08640 (11)//POPTR_0003s12060 (11)	scaffold_1:6575270-6576252(-) (11)//scaffold_3:12744623-12745568(-) (11)	NA	Q93ZQ5	SPX domain-containing membrane protein At4g22990	AT4G22990.1	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os04g48390.1	"uncharacterized membrane protein, putative, expressed"	Medtr1g126330.1	"SPX, N-terminal; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1027.1.A1_at	A	A1TS	POPTR_0003s12060	POPTR_0003s12060 (11)	scaffold_3:12744473-12745342(-) (11)	NA	Q93ZQ5	SPX domain-containing membrane protein At4g22990	AT4G22990.1	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os04g48390.1	"uncharacterized membrane protein, putative, expressed"	Medtr1g126330.1	"SPX, N-terminal; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1027.2.A1_at	A	A1TS	POPTR_0001s08640	POPTR_0001s08640 (11)	scaffold_1:6575092-6576030(-) (11)	NA	Q93ZQ5	SPX domain-containing membrane protein At4g22990	AT4G22990.1	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os04g48390.1	"uncharacterized membrane protein, putative, expressed"	Medtr1g126330.1	"SPX, N-terminal; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10270.2.A1_a_at	A	A1TS	POPTR_0003s21320	POPTR_0003s21320 (11)	scaffold_3:19526603-19527378(-) (11)	NA	Q07100	Serine/threonine-protein phosphatase PP2A-4 catalytic subunit	AT2G42500.1	protein phosphatase 2A-3 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	Medtr4g133950.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.102710.1.A1_a_at	A	A1TS	POPTR_0018s08330	POPTR_0018s08330 (11)	scaffold_18:9272023-9272114(-) (11)	NA	NA	NA	AT1G74530.3	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os08g07430.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102710.1.A1_at	A	A1MS	POPTR_0018s08330	POPTR_0018s08330 (11)	scaffold_18:9271745-9272270(-) (11)	NA	NA	NA	AT1G74530.3	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os08g07430.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102710.2.A1_at	A	A1TS	POPTR_0018s08330	POPTR_0018s08330 (10)	scaffold_18:9270061-9270996(-) (10)	NA	NA	NA	AT1G74530.3	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os08g07430.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102749.1.S1_at	A	A1TS	POPTR_0003s15010	POPTR_0003s15010 (11)	scaffold_3:14910358-14911291(+) (11)	NA	Q8L6Y4	Polycomb group protein EMBRYONIC FLOWER 2	AT5G51230.1	VEFS-Box of polycomb protein 	LOC_Os09g13630.1	"ZOS9-03 - C2H2 zinc finger protein, expressed"	Medtr5g013280.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102758.1.S1_at	A	A1TS	POPTR_0002s21510	POPTR_0002s21510 (9)	scaffold_2:17996667-17998260(-) (9)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT3G21630.1	chitin elicitor receptor kinase 1 	LOC_Os08g42580.1	"protein kinase domain containing protein, expressed"	Medtr5g093450.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.102795.1.A1_s_at	A	A1TS	POPTR_0001s44690	POPTR_0001s44690 (11)	scaffold_1:45129019-45130548(-) (11)	NA	NA	NA	AT1G50900.1	Ankyrin repeat family protein 	LOC_Os07g33660.1	expressed protein	Medtr3g020820.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102817.1.S1_s_at	A	A1TS	POPTR_0001s25670	POPTR_0001s25670 (11)	scaffold_1:24726920-24726956(-) (11)	NA	NA	NA	AT3G47070.1	"LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr5g078450.1	"thylakoid soluble phosphoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102843.1.S1_at	A	A1TS	POPTR_0001s38040	POPTR_0001s38040 (11)	scaffold_1:37081648-37083467(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102862.1.S1_s_at	A	A1TS	POPTR_0001s23510	POPTR_0001s23510 (11)	scaffold_1:22906569-22908036(-) (11)	NA	Q5RF97	Box C/D snoRNA protein 1	AT1G04945.2	HIT-type Zinc finger family protein 	LOC_Os01g73150.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10288.1.A1_a_at	A	A1MA	POPTR_0014s06110	POPTR_0014s06110 (11)	scaffold_14:4586704-4586925(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10288.2.A1_at	A	A1MA	POPTR_0014s06110	POPTR_0014s06110 (9)	scaffold_14:4586593-4587157(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1029.1.S1_at	A	A1TS	POPTR_0008s14170	POPTR_0008s14170 (11)	scaffold_8:9352631-9354503(-) (11)	NA	NA	NA	AT1G75010.1	GTP binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102951.1.S1_at	A	A1TS	POPTR_0018s06410	POPTR_0018s06410 (11)	scaffold_18:6306542-6306944(+) (11)	NA	NA	NA	AT2G03500.1	Homeodomain-like superfamily protein 	LOC_Os01g08160.1	"MYB family transcription factor, putative, expressed"	Medtr8g118880.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102960.1.S1_at	A	A1TS	POPTR_0006s21470	POPTR_0006s21470 (11)	scaffold_6:20538518-20538683(-) (11)	NA	NA	NA	AT2G35880.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os11g36340.1	"lymphoid organ expressed yellow head virus receptor protein, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10297.1.S1_at	A	A1TS	POPTR_0004s23310	POPTR_0004s23310 (11)	scaffold_4:22092224-22092550(+) (11)	NA	Q02028	"Stromal 70 kDa heat shock-related protein, chloroplastic"	AT5G49910.1	chloroplast heat shock protein 70-2 	LOC_Os12g14070.1	"DnaK family protein, putative, expressed"	Medtr2g005480.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102970.1.A1_at	A	A1TS	POPTR_0006s19320	POPTR_0006s19320 (10)	scaffold_6:18363339-18363688(+) (10)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT2G23950.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g34380.1	"receptor-like kinase, putative, expressed"	Medtr8g144660.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.102976.1.S1_at	A	A1TS	POPTR_0004s12340	POPTR_0004s12340 (10)	scaffold_4:11451969-11453248(+) (11)	NA	Q8GWT1	Probable galacturonosyltransferase 14	AT5G15470.1	galacturonosyltransferase 14 	LOC_Os12g38930.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g011880.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.102987.1.S1_s_at	A	A1TS	POPTR_0019s14860	POPTR_0019s14860 (11)	scaffold_19:15513984-15514348(-) (11)	NA	O22932	CBL-interacting serine/threonine-protein kinase 11	AT2G30360.1	SOS3-interacting protein 4 	LOC_Os05g43840.1	"CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g082950.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1030.1.S1_s_at	A	A1TS	POPTR_0016s14270	POPTR_0016s14270 (11)	scaffold_16:13523085-13523394(+) (11)	NA	Q9M5X8	Non-specific lipid-transfer protein	AT2G38540.1	lipid transfer protein 1 	LOC_Os11g02369.1	"LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1030.1.S1_x_at	A	A1TS	POPTR_0016s14270	POPTR_0016s14270 (11)	scaffold_16:13523072-13523625(+) (11)	NA	Q9M5X8	Non-specific lipid-transfer protein	AT2G38540.1	lipid transfer protein 1 	LOC_Os11g02369.1	"LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103015.1.S1_at	A	A1TS	POPTR_0001s17000	POPTR_0001s17000 (11)	scaffold_1:13809914-13810338(-) (11)	NA	Q8VE65	Transcription initiation factor TFIID subunit 12	AT1G17440.2	Transcription initiation factor TFIID subunit A 	LOC_Os01g62820.3	"Transcription initiation factor TFIID subunit A containing protein, expressed"	Medtr8g024640.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006352|transcription initiation||GO:0006461|protein complex assembly	GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
PtpAffx.103022.1.S1_at	A	A1TS	POPTR_0018s10000	POPTR_0018s10000 (11)	scaffold_18:11055855-11056816(+) (11)	NA	Q9FKM7	Putative auxin-responsive protein IAA33	AT5G57420.1	indole-3-acetic acid inducible 33 	LOC_Os04g55950.1	expressed protein	Medtr8g129010.1	Aux/IAA_ARF_dimerisation 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103103.1.S1_s_at	A	A1TS	POPTR_0004s09350	POPTR_0004s09350 (11)	scaffold_4:7898032-7898463(+) (11)	NA	Q9LF46	2-hydroxyacyl-CoA lyase	AT5G17380.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os01g32080.1	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr3g150570.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.103104.1.A1_at	A	A1TS	POPTR_0012s02480	POPTR_0012s02480 (11)	scaffold_12:2037418-2037856(-) (11)	NA	Q9STP8	Acyl-CoA-binding domain-containing protein 2	AT4G27780.1	acyl-CoA binding protein 2 	LOC_Os04g58550.1	"acyl-CoA-binding domain-containing protein 6, putative, expressed"	Medtr5g046490.1	Ankyrin 	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.103104.2.A1_s_at	A	A1TS	POPTR_0015s01250	POPTR_0015s01250 (11)	scaffold_15:789435-789793(+) (11)	NA	Q9STP8	Acyl-CoA-binding domain-containing protein 2	AT4G27780.1	acyl-CoA binding protein 2 	LOC_Os04g58550.1	"acyl-CoA-binding domain-containing protein 6, putative, expressed"	Medtr5g046490.1	Ankyrin 	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.103131.1.S1_at	A	A1TS	POPTR_0007s04700	POPTR_0007s04700 (9)	scaffold_7:2908729-2910151(+) (9)	NA	Q5PQN1	Probable E3 ubiquitin-protein ligase HERC4	AT5G63860.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g35570.1	"Regulator of chromosome condensation domain containing protein, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103190.1.S1_at	A	A1TS	POPTR_0003s06460	POPTR_0003s06460 (11)	scaffold_3:7943086-7943378(-) (11)	POPTR_0001s16800 (6)	P24465	Cytochrome P450 71A1	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.103209.1.S1_at	A	A1TS	POPTR_0018s06640	POPTR_0018s06640 (11)	scaffold_18:6683591-6685762(+) (11)	NA	Q9SGE9	Probable phenylalanyl-tRNA synthetase beta chain	AT1G72550.1	tRNA synthetase beta subunit family protein 	LOC_Os05g48510.1	"phenylalanyl-tRNA synthetase beta chain, putative, expressed"	Medtr8g115440.1	"Phenylalanyl-tRNA synthetase, beta subunit archae/euk cytosolic "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0003723|RNA binding	NA
PtpAffx.103261.1.S1_a_at	A	A1TS	POPTR_0018s06630	POPTR_0018s06630 (11)	scaffold_18:6669030-6670055(+) (11)	NA	Q9C5D7	Probable caffeoyl-CoA O-methyltransferase At4g26220	AT4G26220.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g160600.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.103262.1.S1_at	A	A1TS	POPTR_0006s19790	POPTR_0006s19790 (11)	scaffold_6:18811018-18811166(-) (11)	NA	NA	NA	AT4G30900.2	DNAse I-like superfamily protein 	LOC_Os05g19974.1	"endonuclease/exonuclease/phosphatase family protein, putative, expressed"	Medtr8g145310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10330.2.S1_a_at	A	A1TS	POPTR_0001s41970	POPTR_0001s41970 (10)	scaffold_1:41731555-41732106(-) (10)	NA	NA	NA	AT5G54470.1	B-box type zinc finger family protein 	LOC_Os08g08120.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g103200.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.10337.1.A1_at	A	A1TS	POPTR_0005s25590	POPTR_0005s25590 (11)	scaffold_5:23832986-23833410(+) (11)	NA	Q9LQZ7	Probable salt tolerance-like protein At1g75540	AT1G75540.1	salt tolerance homolog2 	LOC_Os04g45690.1	"B-box zinc finger family protein, putative, expressed"	Medtr1g028510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.103387.1.S1_at	A	A1TS	POPTR_0019s09010	POPTR_0019s09010 (11)	scaffold_19:10605791-10606278(-) (11)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os05g40200.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr5g083430.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.103401.2.S1_s_at	A	A2TS	POPTR_0005s23590	POPTR_0005s23590 (11)//POPTR_0284s00200 (11)	scaffold_284:17276-17501(+) (11)//scaffold_5:22304665-22312665(+) (11)	POPTR_0005s23580 (8)	Q94LX1	"Chlorophyllase-1, chloroplastic"	AT1G19670.1	chlorophyllase 1 	LOC_Os10g28370.1	"chlorophyllase-2, chloroplast precursor, putative, expressed"	Medtr8g096370.1	Chlorophyllase 	GO:0015996|chlorophyll catabolic process	GO:0047746|chlorophyllase activity	NA
PtpAffx.103430.1.A1_at	A	A1TS	POPTR_0001s11880	POPTR_0001s11880 (10)	scaffold_1:9212829-9213709(+) (10)	NA	Q94KB2	MLO-like protein 13	AT4G24250.1	Seven transmembrane MLO family protein 	LOC_Os05g34550.1	"MLO domain containing protein, putative, expressed"	Medtr2g034050.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.103457.1.S1_at	A	A1TS	POPTR_0001s46070	POPTR_0001s46070 (10)	scaffold_1:46557888-46558131(+) (10)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.103471.2.A1_at	A	A1MS	POPTR_0008s03990	POPTR_0008s03990 (11)	scaffold_8:2201092-2201198(+) (11)	NA	Q8VX13	Protein disulfide isomerase-like 1-3	AT3G54960.1	PDI-like 1-3 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.1035.1.A1_at	A	A1TS	POPTR_0003s20320	POPTR_0003s20320 (11)	scaffold_3:18833773-18834209(-) (11)	NA	NA	NA	AT2G16770.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os06g50310.1	"E2F-related protein, putative, expressed"	Medtr4g098490.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.103505.1.S1_at	A	A1TS	POPTR_0006s14610	POPTR_0006s14610 (11)	scaffold_6:11954383-11954912(+) (11)	NA	NA	NA	AT1G17455.2	ELF4-like 4 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr8g024260.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103505.2.S1_at	A	A1MS	POPTR_0006s14610	POPTR_0006s14610 (9)	scaffold_6:11953501-11954045(+) (9)	NA	NA	NA	AT1G17455.2	ELF4-like 4 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr8g024260.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103510.1.S1_at	A	A1TS	POPTR_0007s07100	POPTR_0007s07100 (10)	scaffold_7:5423862-5424192(-) (10)	NA	Q9SJ20	Ribonucleoside-diphosphate reductase large subunit	AT2G21790.1	ribonucleotide reductase 1 	LOC_Os06g07210.1	"ribonucleoside-diphosphate reductase large subunit, putative, expressed"	Medtr4g141590.1	"Ribonucleotide reductase R1 subunit, N-terminal; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0055114|oxidation reduction	GO:0005524|ATP binding||GO:0004748|ribonucleoside-diphosphate reductase activity	GO:0005971|ribonucleoside-diphosphate reductase complex
PtpAffx.103517.1.S1_at	A	A1TS	POPTR_0013s05040	POPTR_0013s05040 (10)	scaffold_13:3557548-3558753(+) (10)	NA	P52914	Nucleoside-triphosphatase	AT5G18280.1	apyrase 2 	LOC_Os03g21120.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.103526.1.S1_at	A	A1TS	POPTR_0016s02100	POPTR_0016s02100 (11)	scaffold_16:1010630-1012008(+) (11)	NA	Q7ZUW2	Hypoxia up-regulated protein 1	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g48110.1	"DnaK family protein, putative, expressed"	Medtr3g068340.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10355.1.S1_at	A	A1TS	POPTR_0006s10720	POPTR_0006s10720 (10)	scaffold_6:8053179-8053491(-) (10)	NA	Q8K4Q0	Regulatory-associated protein of mTOR	AT3G08850.1	"HEAT repeat ;WD domain, G-beta repeat protein protein "	LOC_Os12g01922.1	"WD domain and HEAT domain containing protein, putative, expressed"	Medtr7g077750.1	WD40-like; Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10356.1.S1_at	A	A1TS	POPTR_0009s10860	POPTR_0009s10860 (11)	scaffold_9:9207953-9208480(+) (11)	NA	Q96MB7	Putative nuclease HARBI1	AT3G19120.1	PIF / Ping-Pong family of plant transposases 	LOC_Os05g51520.1	expressed protein	Medtr4g129210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103568.1.S1_s_at	A	A1TS	POPTR_0005s25630	POPTR_0005s25630 (11)	scaffold_5:23856216-23856738(-) (11)	NA	NA	NA	AT5G42480.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g03000.2	"division protein, putative, expressed"	Medtr1g028480.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103577.1.S1_at	A	A1TS	POPTR_0006s06320	POPTR_0006s06320 (11)	scaffold_6:4508302-4508725(+) (11)	NA	Q8BQS5	Adiponectin receptor protein 2	AT5G20270.1	heptahelical transmembrane protein1 	LOC_Os06g43620.1	"haemolysin-III, putative, expressed"	Medtr8g121650.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
PtpAffx.10359.1.S1_at	A	A1TS	POPTR_0015s11300	POPTR_0015s11300 (10)	scaffold_15:11901871-11902267(+) (10)	NA	Q8BMD7	MORC family CW-type zinc finger protein 4	AT5G50780.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os02g27000.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103594.1.S1_s_at	A	A1TS	POPTR_0016s02520	POPTR_0016s02520 (11)	scaffold_16:1244413-1244826(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g20350.1	conserved hypothetical protein	Medtr7g104760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103607.1.S1_at	A	A1TS	POPTR_0006s29060	POPTR_0006s29060 (10)	scaffold_6:26544988-26546328(+) (10)	POPTR_0006s28690 (7)	Q63528	Replication protein A 32 kDa subunit	AT2G24490.2	replicon protein A2 	LOC_Os02g58220.1	"RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed"	Medtr8g129120.1	"nucleic acid binding, OB-fold, tRNA/helicase-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.103616.1.S1_at	A	A1TS	POPTR_0013s11510	POPTR_0013s11510 (11)	scaffold_13:12121561-12122011(-) (11)	NA	Q9C7G4	Transcription factor TCP22	AT1G72010.1	TCP family transcription factor  	LOC_Os12g07480.1	"TCP family transcription factor, putative, expressed"	Medtr2g006520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103621.1.S1_at	A	A1TS	POPTR_0006s03080	POPTR_0006s03080 (11)	scaffold_6:1944252-1945281(-) (11)	NA	Q2HJC9	Polyglutamine-binding protein 1	AT2G41020.1	WW domain-containing protein 	LOC_Os01g68760.1	"WW domain containing protein, expressed"	Medtr6g012950.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase); WW/Rsp5/WWP "	NA	GO:0005515|protein binding	NA
PtpAffx.10363.1.S1_at	A	A1TS	POPTR_0001s08400	POPTR_0001s08400 (11)	scaffold_1:6408447-6408761(+) (11)	NA	B6YWH0	Glyoxylate reductase	AT1G12550.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01674.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009260.1	"D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0048037|cofactor binding"	NA
PtpAffx.103645.1.A1_at	A	A1TS	POPTR_0013s12370	POPTR_0013s12370 (11)	scaffold_13:13000178-13000613(+) (11)	NA	Q8LPR5	Transcription factor TCP4	AT3G15030.3	TCP family transcription factor 4 	LOC_Os01g11550.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10365.1.A1_a_at	A	A2TS	POPTR_0008s16860	POPTR_0010s08030 (11)//POPTR_0008s16860 (11)	scaffold_10:8994203-8994913(-) (11)//scaffold_8:11336184-11336911(+) (11)	NA	Q5U3N0	Pleckstrin homology domain-containing family A member 8	AT2G33470.2	glycolipid transfer protein 1 	LOC_Os02g40890.2	"GLTP domain containing protein, putative, expressed"	Medtr1g090290.1	"Pleckstrin homology domain-containing family A member 8, related "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.10365.1.A1_at	A	A1TS	POPTR_0010s08030	POPTR_0010s08030 (11)	scaffold_10:8993682-8995576(-) (11)	NA	Q5U3N0	Pleckstrin homology domain-containing family A member 8	AT2G33470.2	glycolipid transfer protein 1 	LOC_Os02g40890.2	"GLTP domain containing protein, putative, expressed"	Medtr1g090290.1	"Pleckstrin homology domain-containing family A member 8, related "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.10365.2.S1_at	A	A1TS	POPTR_0008s16860	POPTR_0008s16860 (11)	scaffold_8:11335537-11337469(+) (11)	NA	Q5U3N0	Pleckstrin homology domain-containing family A member 8	AT2G33470.2	glycolipid transfer protein 1 	LOC_Os02g40890.2	"GLTP domain containing protein, putative, expressed"	Medtr1g090290.1	"Pleckstrin homology domain-containing family A member 8, related "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.10366.1.A1_at	A	A1TS	POPTR_0015s10130	POPTR_0015s10130 (11)	scaffold_15:11151893-11161603(+) (11)	NA	Q9SWE5	Phosphopantothenoylcysteine decarboxylase	AT3G18030.1	HAL3-like protein A 	LOC_Os06g09910.2	"phosphopantothenoylcysteine decarboxylase, putative, expressed"	Medtr8g150970.1	Flavoprotein 	NA	GO:0003824|catalytic activity	NA
PtpAffx.103664.1.A1_at	A	A1TS	POPTR_0018s02280	POPTR_0018s02280 (11)	scaffold_18:2028286-2028656(+) (11)	NA	Q94AW5	Ethylene-responsive transcription factor ERF003	AT5G25190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g55380.1	"AP2 domain containing protein, expressed"	Medtr3g137990.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.103665.1.A1_s_at	A	A1TS	POPTR_0014s14050	POPTR_0014s14050 (11)	scaffold_14:10283732-10284242(-) (11)	NA	Q60HE9	Lysosomal alpha-mannosidase	AT5G13980.2	Glycosyl hydrolase family 38 protein 	LOC_Os11g32260.1	"lysosomal alpha-mannosidase precursor, putative, expressed"	Medtr3g151240.2	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0044262|cellular carbohydrate metabolic process||GO:0006013|mannose metabolic process||GO:0044281|small molecule metabolic process	GO:0008270|zinc ion binding||GO:0004559|alpha-mannosidase activity	NA
PtpAffx.103669.1.S1_at	A	A1TS	POPTR_0007s07260	POPTR_0007s07260 (10)	scaffold_7:5567712-5568341(-) (10)	NA	NA	NA	AT5G08340.1	Nucleotidylyl transferase superfamily protein 	LOC_Os03g58710.2	"riboflavin biosynthesis protein-related, putative, expressed"	Medtr1g143840.1	"riboflavin biosynthesis protein-related, putative "	GO:0009231|riboflavin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0003919|FMN adenylyltransferase activity	NA
PtpAffx.103673.1.A1_at	A	A1TS	POPTR_0006s11280	POPTR_0006s11280 (11)	scaffold_6:8568546-8569088(+) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G01980.1	RING/U-box superfamily protein 	LOC_Os12g02620.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g080710.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103704.1.A1_at	A	A1TS	POPTR_0007s03880	POPTR_0007s03880 (10)	scaffold_7:2308674-2310018(+) (10)	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.10371.2.S1_a_at	A	A2TS	POPTR_0004s20210	POPTR_0004s20210 (11)//POPTR_0009s15470 (11)	scaffold_4:19828550-19828954(-) (11)//scaffold_9:11959259-11959663(-) (11)	NA	Q8N8F6	Protein YIPF7	AT2G36300.1	Integral membrane Yip1 family protein 	LOC_Os03g17990.1	"Yip1 domain containing protein, expressed"	Medtr7g127220.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10376.1.S1_a_at	A	A2TS	POPTR_0002s23800	POPTR_0014s14270 (11)//POPTR_0002s23800 (11)	scaffold_14:10434011-10434943(-) (11)//scaffold_2:21294478-21295390(+) (11)	NA	Q9S702	"Aspartokinase 3, chloroplastic"	AT3G02020.1	aspartate kinase 3 	LOC_Os07g20544.1	"aspartokinase, chloroplast precursor, putative, expressed"	Medtr7g096930.1	Aspartate kinase region 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0016597|amino acid binding	NA
PtpAffx.10376.3.A1_at	A	A1TS	POPTR_0002s23800	POPTR_0002s23800 (10)	scaffold_2:21294444-21295860(+) (10)	NA	Q9S702	"Aspartokinase 3, chloroplastic"	AT3G02020.1	aspartate kinase 3 	LOC_Os07g20544.1	"aspartokinase, chloroplast precursor, putative, expressed"	Medtr7g096930.1	Aspartate kinase region 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0016597|amino acid binding	NA
PtpAffx.103764.1.S1_at	A	A1MS	POPTR_0005s05860	POPTR_0005s05860 (11)	scaffold_5:3825534-3826028(+) (11)	NA	Q8LST2	Probable serine/threonine-protein kinase WNK7	AT1G49160.2	Protein kinase superfamily protein 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr4g142270.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.103794.1.A1_s_at	A	A1TS	POPTR_0012s03550	POPTR_0012s03550 (11)	scaffold_12:2787055-2787723(-) (11)	NA	Q9FX31	Homeobox-leucine zipper protein HDG11	AT1G73360.1	homeodomain GLABROUS 11 	LOC_Os06g10600.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.103796.1.S1_at	A	A1TS	POPTR_0004s04100	POPTR_0004s04100 (11)	scaffold_4:2943222-2945253(-) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT1G60900.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.103853.1.A1_at	A	A1TS	POPTR_0014s07310	POPTR_0014s07310 (10)	scaffold_14:5512920-5513378(-) (10)	NA	Q6ME80	Ribosomal RNA small subunit methyltransferase A	AT1G01860.1	Ribosomal RNA adenine dimethylase family protein 	LOC_Os02g03050.1	"dimethyladenosine transferase, putative, expressed"	Medtr7g083900.1	Ribosomal RNA adenine methylase transferase 	GO:0044260|cellular macromolecule metabolic process||GO:0000154|rRNA modification	"GO:0000179|""rRNA (adenine-N6,N6-)-dimethyltransferase activity"""	NA
PtpAffx.10386.1.S1_at	A	A1TS	POPTR_0018s09970	POPTR_0018s09970 (9)	scaffold_18:11018422-11020435(-) (9)	NA	Q9Y2D8	Afadin- and alpha-actinin-binding protein	AT5G57410.1	Afadin/alpha-actinin-binding protein 	LOC_Os08g14460.2	expressed protein	Medtr8g129100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103863.1.S1_at	A	A1TS	POPTR_0004s03930	POPTR_0004s03930 (9)	scaffold_4:2792590-2792754(+) (9)	NA	Q0WUU6	Probable polyol transporter 4	AT2G20780.1	Major facilitator superfamily protein 	LOC_Os04g44750.1	"transporter family protein, putative, expressed"	Medtr2g014990.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.103875.1.S1_at	A	A2TS	POPTR_0012s11100	POPTR_0012s11150 (11)//POPTR_0012s11100 (11)	scaffold_12:11688321-11690432(-) (11)//scaffold_12:11711135-11713321(+) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G61840.1	Exostosin family protein 	LOC_Os01g70200.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.103877.1.S1_at	A	A1TS	POPTR_0003s07080	POPTR_0003s07080 (10)	scaffold_3:8686715-8687522(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103879.1.S1_at	A	A1TS	POPTR_0014s08510	POPTR_0014s08510 (10)	scaffold_14:6328745-6330006(+) (10)	NA	NA	NA	AT4G01290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1797 Blast hits to 1352 proteins in 216 species: Archae - 0; Bacteria - 202; Metazoa - 850; Fungi - 267; Plants - 109; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink). 	LOC_Os06g01680.1	expressed protein	Medtr7g088510.1	ABC transporter related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10388.1.A1_at	A	A1TS	POPTR_0006s10220	POPTR_0006s10220 (10)	scaffold_6:7607330-7607951(-) (10)	NA	Q8W4I7	Calcium-dependent protein kinase 13	AT3G51850.1	calcium-dependent protein kinase 13 	LOC_Os01g61590.1	"CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g006210.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103881.1.A1_at	A	A1TS	POPTR_0008s05360	POPTR_0008s05360 (11)	scaffold_8:3106846-3107664(-) (11)	NA	B9HMF8	UPF0497 membrane protein 12	AT3G55390.1	Uncharacterised protein family (UPF0497) 	LOC_Os12g38100.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g076970.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103892.1.S1_a_at	A	A1TS	POPTR_0002s24290	POPTR_0002s24290 (11)	scaffold_2:21690983-21691335(-) (11)	NA	Q8LG89	Basic blue protein	AT2G02850.1	plantacyanin 	LOC_Os03g50160.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g137630.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.103921.1.S1_at	A	A1TS	POPTR_0004s21650	POPTR_0004s21650 (10)	scaffold_4:20671831-20672396(-) (10)	NA	NA	NA	AT2G17230.1	EXORDIUM like 5 	LOC_Os06g04250.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10393.1.S1_a_at	A	A1TS	POPTR_0005s17120	POPTR_0005s17120 (11)	scaffold_5:14261372-14262163(-) (11)	NA	P93212	14-3-3 protein 7	AT1G34760.1	general regulatory factor 11 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.10393.2.S1_at	A	A1TS	POPTR_0005s17120	POPTR_0005s17120 (10)	scaffold_5:14261625-14261758(-) (10)	NA	P93212	14-3-3 protein 7	AT1G34760.1	general regulatory factor 11 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.103931.1.S1_at	A	A1TS	POPTR_0011s11640	POPTR_0011s11640 (11)	scaffold_11:14441205-14441241(+) (11)	NA	Q9FN32	Protein yippee-like At5g53940	AT5G53940.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g025460.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103932.1.S1_at	A	A1TS	POPTR_0001s23890	POPTR_0001s23890 (10)	scaffold_1:23263522-23264294(-) (10)	NA	Q9LKF9	Cleavage and polyadenylation specificity factor subunit 2	AT5G23880.1	cleavage and polyadenylation specificity factor 100 	LOC_Os09g39590.1	"metallo-beta-lactamase, putative, expressed"	Medtr1g068100.1	Beta-lactamase-like; TAP42-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103942.1.S1_s_at	A	A1TS	POPTR_0003s16170	POPTR_0003s16170 (11)	scaffold_3:15787059-15787695(+) (11)	NA	Q5W7F2	ADP-ribosylation factor GTPase-activating protein AGD3	AT5G13300.1	ARF GTPase-activating protein 	LOC_Os09g33600.1	"ARF GTPase-activating domain-containing protein, putative, expressed"	Medtr7g020730.1	Arf GTPase activating protein; BAR; Pleckstrin homology-type 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.103958.1.S1_at	A	A1TS	POPTR_0001s35520	POPTR_0001s35520 (11)	scaffold_1:33890432-33890865(+) (11)	NA	B0F9L4	Golgin candidate 6	AT3G27530.1	golgin candidate 6 	LOC_Os12g35360.1	"vesicle tethering family protein, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0016020|membrane
PtpAffx.103965.1.S1_at	A	A1TS	POPTR_0015s01630	POPTR_0015s01630 (11)	scaffold_15:1032454-1033043(+) (11)	NA	O35685	Nuclear migration protein nudC	AT4G27890.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104019.1.A1_a_at	A	A2TS	POPTR_0006s09660	POPTR_0006s09660 (11)//POPTR_0016s11740 (11)	scaffold_16:10922889-10924194(+) (11)//scaffold_6:7101942-7103333(+) (11)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT3G54110.1	plant uncoupling mitochondrial protein 1 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104019.1.A1_at	A	A1TS	POPTR_0006s09660	POPTR_0006s09660 (11)	scaffold_6:7101913-7103477(+) (11)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT3G54110.1	plant uncoupling mitochondrial protein 1 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104019.2.A1_at	A	A1TS	POPTR_0016s11740	POPTR_0016s11740 (11)	scaffold_16:10923205-10924369(+) (11)//scaffold_588:315-634(+) (9)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT3G54110.1	plant uncoupling mitochondrial protein 1 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104039.1.S1_s_at	A	A1TS	POPTR_0006s05480	POPTR_0006s05480 (10)	scaffold_6:3877142-3877546(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10405.1.S1_x_at	A	A1TS	POPTR_0580s00210	POPTR_0580s00210 (11)	scaffold_580:8339-9094(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104058.1.S1_at	A	A1MA	POPTR_0009s17070	POPTR_0009s17070 (11)	scaffold_9:12848389-12848634(-) (11)	NA	Q9FEA2	"Glutamyl-tRNA synthetase, chloroplastic/mitochondrial"	AT5G64050.1	glutamate tRNA synthetase 	LOC_Os02g02860.1	"glutamyl-tRNA synthetase, putative, expressed"	Medtr1g103230.1	"Glutamyl-tRNA synthetase, class Ic; Glutaminyl-tRNA synthetase; Glutathione S-transferase, C-terminal-like "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.10406.1.A1_at	A	A1TS	POPTR_0018s09210	POPTR_0018s09210 (11)	scaffold_18:10085348-10085568(-) (11)	NA	Q53HY2	Ninja-family protein mc410	AT4G28910.3	novel interactor of JAZ 	LOC_Os05g48500.3	expressed protein	Medtr6g098770.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104072.1.S1_at	A	A1TS	POPTR_0001s06980	POPTR_0001s06980 (11)	scaffold_1:5335648-5336359(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G07050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr8g044450.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.104095.1.S1_at	A	A1TS	POPTR_0014s02510	POPTR_0014s02510 (10)	scaffold_14:2084161-2084443(-) (10)	NA	NA	NA	AT4G06536.1	SPla/RYanodine receptor (SPRY) domain-containing protein 	LOC_Os02g40110.1	expressed protein	Medtr3g147400.1	SPla/RYanodine receptor SPRY 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1041.1.S1_at	A	A1TS	POPTR_0013s14860	POPTR_0013s14860 (11)	scaffold_13:14957179-14957216(-) (11)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.1041.1.S1_s_at	A	A1TS	POPTR_0013s14860	POPTR_0013s14860 (11)	scaffold_13:14956847-14957077(-) (11)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.1041.2.A1_a_at	A	A1TS	POPTR_0009s11540	POPTR_0009s11540 (11)	scaffold_9:9568688-9569639(+) (11)	NA	Q9LHN4	Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5	AT3G18850.4	lysophosphatidyl acyltransferase 5 	LOC_Os01g57360.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.1041.4.S1_a_at	A	A1TS	POPTR_0010s25630	POPTR_0010s25630 (11)	scaffold_10:21217210-21217443(-) (11)	NA	Q54VZ8	Exocyst complex component 8	AT5G49830.1	exocyst complex component 84B 	LOC_Os07g10110.1	expressed protein	Medtr4g023160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104103.1.S1_at	A	A1TS	POPTR_0006s06240	POPTR_0006s06240 (11)	scaffold_6:4440658-4441094(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g55920.1	expressed protein	Medtr8g121730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10412.1.A1_at	A	A1MS	POPTR_0001s24910	POPTR_0001s24910 (10)	scaffold_1:24179783-24180088(-) (10)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.104125.1.S1_at	A	A1TS	POPTR_0008s07210	POPTR_0008s07210 (9)	scaffold_8:4382672-4384034(-) (10)	NA	Q9LYN6	Probable inactive receptor-like protein kinase At3g56050	AT2G40270.2	Protein kinase family protein 	LOC_Os03g18370.1	"MRH1, putative, expressed"	Medtr1g102890.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.104155.2.S1_at	A	A1TS	POPTR_0009s09470	POPTR_0009s09470 (9)	scaffold_9:8370555-8371444(+) (9)	NA	O81760	Probable protein phosphatase 2C 63	AT4G33920.1	Protein phosphatase 2C family protein 	LOC_Os12g39120.1	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104157.1.S1_at	A	A1TS	POPTR_0008s13700	POPTR_0008s13700 (11)	scaffold_8:9013384-9013741(-) (11)	NA	Q5PNY6	U-box domain-containing protein 21	AT5G37490.1	ARM repeat superfamily protein 	LOC_Os02g50460.1	"immediate-early fungal elicitor protein CMPG1, putative, expressed"	Medtr5g085300.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.104176.1.S1_at	A	A1TS	POPTR_0009s10480	POPTR_0009s10480 (11)	scaffold_9:9005011-9005236(-) (11)	NA	P40781	Protein CYPRO4	AT3G19240.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g08190.1	"CYPRO4, putative, expressed"	Medtr4g129640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104180.1.S1_at	A	A3TS	POPTR_0770s00220	POPTR_0770s00220 (11)//POPTR_0770s00200 (10)//POPTR_0010s08620 (9)	scaffold_10:9519150-9519577(-) (10)//scaffold_10:9532775-9533193(-) (10)//scaffold_770:682-6851(-) (11)//scaffold_770:6805-7227(-) (10)	NA	P19873	Inhibitor of trypsin and hageman factor	AT5G43580.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr1g090000.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.104195.1.S1_s_at	A	A1TS	POPTR_0007s10930	POPTR_0007s10930 (11)	scaffold_7:11122861-11123189(-) (11)	NA	Q01389	Serine/threonine-protein kinase BCK1/SLK1/SSP31	AT5G67080.1	mitogen-activated protein kinase kinase kinase 19 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.104205.1.A1_at	A	A1TS	POPTR_0010s22080	POPTR_0010s22080 (11)	scaffold_10:19143287-19143833(-) (11)	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.104221.1.S1_at	A	A1TS	POPTR_0012s05560	POPTR_0012s05560 (11)	scaffold_12:5201264-5202154(+) (11)	NA	NA	NA	AT2G42780.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). "	LOC_Os08g07280.1	expressed protein	Medtr3g064530.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0016021|integral to membrane||GO:0005634|nucleus
PtpAffx.104221.2.S1_a_at	A	A1TS	POPTR_0012s05560	POPTR_0012s05560 (11)	scaffold_12:5198716-5202298(+) (11)	NA	NA	NA	AT2G42780.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). "	LOC_Os08g07280.1	expressed protein	Medtr3g064530.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0016021|integral to membrane||GO:0005634|nucleus
PtpAffx.104237.1.A1_at	A	A1TS	POPTR_0003s04490	POPTR_0003s04490 (10)	scaffold_3:5219312-5220146(+) (10)	NA	Q93Z24	Beta-galactosidase 17	AT1G72990.2	beta-galactosidase 17 	LOC_Os05g46200.2	"beta-galactosidase 8 precursor, putative, expressed"	Medtr2g121200.1	"Glycoside hydrolase, family 35 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.10425.1.S1_at	A	A1TS	POPTR_0010s13660	POPTR_0010s13660 (11)	scaffold_10:13463511-13464055(+) (11)	NA	NA	NA	AT1G68580.2	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os08g33420.1	"agenet domain containing protein, expressed"	Medtr5g068170.1	Bromo adjacent region; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
PtpAffx.104250.1.S1_at	A	A1TS	POPTR_0010s06160	POPTR_0010s06160 (10)	scaffold_10:7584295-7585482(+) (10)	NA	O04450	T-complex protein 1 subunit epsilon	AT1G24510.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g36700.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.104298.1.S1_at	A	A3TS	POPTR_0003s01880	POPTR_0003s01880 (11)//POPTR_0003s01940 (10)//POPTR_0003s01950 (10)	scaffold_3:1754092-1754640(-) (11)//scaffold_3:1816649-1817183(-) (11)//scaffold_3:1836886-1837229(-) (10)	POPTR_0003s01920 (8)	Q4U4N4	Interferon-induced GTP-binding protein Mx2	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.104314.1.S1_s_at	A	A1TS	POPTR_0005s11110	POPTR_0005s11110 (11)	scaffold_5:8046838-8048890(-) (11)	NA	Q9ZVX8	Probable aquaporin PIP2-8	AT2G16850.1	plasma membrane intrinsic protein 2;8 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.104325.1.S1_at	A	A1TS	POPTR_0004s17740	POPTR_0004s17740 (11)	scaffold_4:17807915-17808372(-) (11)	NA	Q9LUS2	"Translocase of chloroplast 120, chloroplastic"	AT3G16620.1	translocon outer complex protein 120 	LOC_Os10g40110.1	"GTP binding protein, putative, expressed"	Medtr2g130100.1	AIG1 	NA	GO:0005525|GTP binding	NA
PtpAffx.104349.1.S1_s_at	A	A1TS	POPTR_0010s13140	POPTR_0010s13140 (11)	scaffold_10:13023376-13023703(+) (11)	NA	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400	AT1G68400.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os01g04230.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g140560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.104425.1.A1_at	A	A1TS	POPTR_0016s02870	POPTR_0016s02870 (10)	scaffold_16:1414141-1415066(-) (10)	NA	Q9Z8L2	4-alpha-glucanotransferase	AT2G40840.1	disproportionating enzyme 2 	LOC_Os07g46790.1	"4-alpha-glucanotransferase, putative, expressed"	Medtr7g105640.1	"Glycoside hydrolase, family 77 "	GO:0005975|carbohydrate metabolic process	GO:0004134|4-alpha-glucanotransferase activity	NA
PtpAffx.10445.1.S1_at	A	A1TS	POPTR_0001s04870	POPTR_0001s04870 (11)	scaffold_1:3735553-3736048(-) (11)	NA	Q9LEH3	Peroxidase 15	AT5G06720.1	peroxidase 2 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	Medtr7g112100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.10446.1.S1_a_at	A	A2TS	POPTR_0001s11430	POPTR_0003s14740 (11)//POPTR_0001s11430 (11)	scaffold_1:8899077-8899344(+) (11)//scaffold_3:14743895-14744162(+) (11)	NA	P05522	Endoglucanase 1	AT1G02800.1	cellulase 2 	LOC_Os08g02220.1	"endoglucanase, putative, expressed"	Medtr3g163060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.104472.1.A1_at	A	A1TS	POPTR_0001s30890	POPTR_0001s30890 (10)	scaffold_1:29309153-29311378(+) (10)	NA	A9VHP8	Kynurenine formamidase	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104487.1.S1_at	A	A1TS	POPTR_0014s04510	POPTR_0014s04510 (11)	scaffold_14:3487226-3488648(+) (11)	NA	Q0WRJ7	"FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic"	AT3G60370.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g30800.1	"immunophilin, putative, expressed"	Medtr4g092670.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.104500.1.A1_at	A	A1TS	POPTR_0009s13230	POPTR_0009s13230 (11)	scaffold_9:10578474-10579667(+) (11)	NA	Q8H110	Protein XAP5 CIRCADIAN TIMEKEEPER	AT2G21150.1	XAP5 family protein 	LOC_Os09g36480.1	"XAP5 family protein, putative, expressed"	Medtr4g157300.1	XAP5 protein 	NA	NA	GO:0005634|nucleus
PtpAffx.104502.1.S1_at	A	A1MS	POPTR_0007s05140	POPTR_0007s05140 (11)	scaffold_7:3324427-3324966(+) (11)	NA	O14327	Polyadenylate-binding protein 2	AT5G10350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g120660.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.104537.1.S1_at	A	A1TS	POPTR_0002s02080	POPTR_0002s02080 (9)	scaffold_2:1116815-1117646(-) (9)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT4G35030.3	Protein kinase superfamily protein 	LOC_Os03g13820.1	"protein kinase family protein, putative, expressed"	Medtr4g098500.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.104546.1.S1_at	A	A1TS	POPTR_0015s14250	POPTR_0015s14250 (10)	scaffold_15:13935270-13935503(+) (10)	NA	Q8VYR9	K(+) efflux antiporter 5	AT5G51710.2	K+ efflux antiporter 5 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr4g160810.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.104546.2.S1_s_at	A	A1TS	POPTR_0012s14240	POPTR_0012s14240 (11)	scaffold_12:14207728-14209062(+) (11)	NA	Q8VYR9	K(+) efflux antiporter 5	AT5G51710.2	K+ efflux antiporter 5 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr4g160810.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.104567.1.S1_at	A	A1TS	POPTR_0001s39520	POPTR_0001s39520 (11)	scaffold_1:38731960-38732432(-) (11)//scaffold_439:14670-15011(-) (10)	POPTR_0439s00200 (7)	Q9ZV88	BES1/BZR1 homolog protein 4	AT1G78700.1	BES1/BZR1 homolog 4 	LOC_Os06g35900.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr2g091180.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104568.1.S1_at	A	A1TS	POPTR_0009s14970	POPTR_0009s14970 (10)	scaffold_9:11618492-11619855(+) (10)	NA	NA	NA	AT2G27740.1	Family of unknown function (DUF662)  	LOC_Os04g33450.2	expressed protein	Medtr7g126780.1	Protein of unknown function DUF662 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104578.1.A1_at	A	A1TS	POPTR_0017s10490	POPTR_0017s10490 (10)	scaffold_17:9928795-9930913(-) (10)	POPTR_0018s09330 (7)	Q8LGU6	Cell division cycle protein 27 homolog B	AT2G20000.1	CDC27  family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104586.1.S1_at	A	A1TS	POPTR_0006s29550	POPTR_0006s29550 (11)	scaffold_6:26883556-26883988(+) (11)	NA	Q9ZQ34	Uncharacterized protein At2g24330	AT4G31080.1	Protein of unknown function (DUF2296) 	LOC_Os02g41990.2	expressed protein	Medtr3g133570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104634.1.S1_at	A	A1TS	POPTR_0015s06990	POPTR_0015s06990 (10)	scaffold_15:8052821-8052939(-) (10)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104643.1.S1_s_at	A	A1TS	POPTR_0001s11240	POPTR_0001s11240 (11)	scaffold_1:8713495-8713836(-) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT1G64640.1	early nodulin-like protein 8 	LOC_Os03g02400.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g116560.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.104679.1.S1_at	A	A1TS	POPTR_0006s05500	POPTR_0006s05500 (9)	scaffold_6:3883115-3885088(-) (9)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10469.3.S1_a_at	A	A1TS	POPTR_0009s13700	POPTR_0009s13700 (11)	scaffold_9:10875943-10876275(+) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10469.5.A1_a_at	A	A1TS	POPTR_0004s18080	POPTR_0004s18080 (11)	scaffold_4:18101222-18101707(+) (11)	NA	Q6EP31	Rac-like GTP-binding protein 5	AT1G75840.1	RAC-like GTP binding protein 5 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr8g089410.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10469.5.A1_at	A	A1TS	POPTR_0004s18080	POPTR_0004s18080 (10)	scaffold_4:18101438-18101562(+) (10)	NA	Q6EP31	Rac-like GTP-binding protein 5	AT1G75840.1	RAC-like GTP binding protein 5 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr8g089410.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10469.7.A1_at	A	A1TS	POPTR_0001s24020	POPTR_0001s24020 (11)	scaffold_1:23424864-23425787(+) (11)	NA	O23826	125 kDa kinesin-related protein	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.10469.8.A1_a_at	A	A1TS	POPTR_0001s04140	POPTR_0001s04140 (11)	scaffold_1:3268435-3268902(-) (11)	NA	Q54S20	Mediator of RNA polymerase II transcription subunit 13	AT1G55325.2	RNA polymerase II transcription mediators 	LOC_Os05g37500.1	expressed protein	Medtr3g105710.1	Rhodopsin-like GPCR superfamily; TRAP240 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104716.1.S1_a_at	A	A1TS	POPTR_0005s10430	POPTR_0005s10430 (11)	scaffold_5:7482965-7485640(-) (11)	NA	NA	NA	AT4G16444.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g09840.1	expressed protein	Medtr8g088040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10474.1.S1_at	A	A1TS	POPTR_0013s02770	POPTR_0013s02770 (11)	scaffold_13:1669846-1671547(+) (11)	NA	NA	NA	AT5G27395.2	"Mitochondrial inner membrane translocase complex, subunit Tim44-related protein "	LOC_Os07g45300.1	tim44-like domain containing protein	Medtr1g098940.1	"Mitochondrial import inner membrane translocase, subunit Tim44 "	GO:0006886|intracellular protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0005744|mitochondrial inner membrane presequence translocase complex
PtpAffx.104760.1.S1_at	A	A1TS	POPTR_0002s25470	POPTR_0002s25470 (11)	scaffold_2:22539057-22540149(-) (11)	NA	Q9SVU5	GDSL esterase/lipase At4g28780	AT4G28780.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143160.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.104811.1.S1_at	A	A1TS	POPTR_0004s00750	POPTR_0004s00750 (10)	scaffold_4:326119-326409(+) (10)	POPTR_0796s00210 (6)	Q09809	Uncharacterized membrane protein C2G11.09	AT4G22120.6	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.104839.1.S1_at	A	A1TS	POPTR_0004s15570	POPTR_0004s15570 (11)	scaffold_4:16179096-16180867(+) (11)	NA	A7SGU6	Proteasome assembly chaperone 2	AT3G18940.1	clast3-related 	LOC_Os03g55784.1	"tumor necrosis factor superfamily, member 5-induced protein 1, putative, expressed"	Medtr4g093120.1	"cell cycle-regulated protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10485.1.A1_s_at	A	A1TS	POPTR_0001s17030	POPTR_0001s17030 (11)	scaffold_1:13863206-13863925(+) (11)	NA	P55039	Developmentally-regulated GTP-binding protein 2	AT1G72660.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g28940.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10485.2.A1_a_at	A	A2TS	POPTR_0001s17030	POPTR_0001s17030 (11)//POPTR_0003s06220 (11)	scaffold_1:13859288-13860358(+) (11)//scaffold_3:7701440-7702746(-) (11)	NA	P55039	Developmentally-regulated GTP-binding protein 2	AT1G72660.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g28940.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.104857.1.S1_a_at	A	A2TS	POPTR_0006s07030	POPTR_0006s07030 (11)//POPTR_0018s13260 (11)	scaffold_18:13647834-13648089(-) (11)//scaffold_6:5069519-5069774(-) (11)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os08g12830.1	"cytidylyltransferase domain containing protein, expressed"	Medtr4g161000.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.104857.1.S1_at	A	A2TS	POPTR_0018s13260	POPTR_0018s13260 (11)//POPTR_0006s07030 (10)	scaffold_18:13647153-13647785(-) (11)//scaffold_6:5068909-5069470(-) (10)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os10g24810.1	"cytidylyltransferase domain containing protein, expressed"	Medtr4g161000.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.104857.2.S1_a_at	A	A2TS	POPTR_0006s07030	POPTR_0006s07030 (11)//POPTR_0018s13260 (11)	scaffold_18:13647877-13648089(-) (11)//scaffold_6:5069562-5069774(-) (11)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os08g12830.1	"cytidylyltransferase domain containing protein, expressed"	Medtr4g161000.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.104890.1.S1_at	A	A1TS	POPTR_0005s25130	POPTR_0005s25130 (11)	scaffold_5:23456668-23457321(-) (11)	NA	P55233	"Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic"	AT1G27680.1	ADPGLC-PPase large subunit 	LOC_Os05g50380.2	"glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed"	Medtr4g095980.1	Protein kinase; ADP-glucose pyrophosphorylase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.1049.1.A1_at	A	A1TS	POPTR_0001s22680	POPTR_0001s22680 (11)	scaffold_1:21567766-21568382(-) (11)	NA	Q40588	L-ascorbate oxidase	AT5G21105.1	Plant L-ascorbate oxidase 	LOC_Os06g37080.1	"L-ascorbate oxidase precursor, putative, expressed"	AC235679_7.1	Cupredoxin AC235679.1 17434-22822 E EGN_Mt090430 200	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.104950.1.S1_at	A	A1MS	POPTR_0002s22380	POPTR_0002s22380 (9)	scaffold_2:19088172-19088674(-) (9)	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105014.1.S1_at	A	A1TS	POPTR_0001s33460	POPTR_0001s33460 (9)	scaffold_1:31654337-31654866(-) (9)	NA	NA	NA	AT3G01990.1	ACT domain repeat 6 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr7g018130.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.105019.1.S1_at	A	A1TS	POPTR_0002s04800	POPTR_0002s04800 (10)	scaffold_2:3028221-3031601(-) (10)	NA	P26882	Peptidyl-prolyl cis-trans isomerase D	AT3G63400.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr3g136570.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.105026.1.S1_at	A	A1MS	POPTR_0014s06920	POPTR_0014s06920 (11)	scaffold_14:5215746-5217223(+) (11)	NA	Q9UT49	Poly(A) RNA polymerase cid13	AT2G45620.1	Nucleotidyltransferase family protein 	LOC_Os02g02970.1	expressed protein	Medtr2g134890.1	PAP/25A-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105037.1.A1_at	A	A1MS	POPTR_0009s12660	POPTR_0009s12660 (11)	scaffold_9:10288298-10288761(-) (11)	NA	Q9SIV5	Zinc finger CCCH domain-containing protein 19	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr3g163050.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105045.1.S1_at	A	A1TS	POPTR_0006s29340	POPTR_0006s29340 (11)	scaffold_6:26741078-26741356(+) (11)	NA	NA	NA	AT4G31270.1	sequence-specific DNA binding transcription factors 	LOC_Os02g07800.1	"transcription factor, putative, expressed"	Medtr1g010230.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10505.1.S1_at	A	A1TS	POPTR_0013s14440	POPTR_0013s14440 (11)	scaffold_13:14624484-14624918(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10507.1.A1_at	A	A1TS	POPTR_0002s24070	POPTR_0002s24070 (11)	scaffold_2:21524516-21524874(-) (11)	NA	Q9SUI4	"Photosystem I reaction center subunit XI, chloroplastic"	AT4G12800.1	photosystem I subunit l 	LOC_Os12g23200.2	"photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed"	Medtr7g089570.1	"Photosystem I reaction centre, subunit XI PsaL "	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
PtpAffx.10507.2.S1_s_at	A	A1TS	POPTR_0014s17400	POPTR_0014s17400 (11)	scaffold_14:13538604-13539270(+) (11)	NA	Q9SUI4	"Photosystem I reaction center subunit XI, chloroplastic"	AT4G12800.1	photosystem I subunit l 	LOC_Os12g23200.2	"photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed"	Medtr7g089570.1	"Photosystem I reaction centre, subunit XI PsaL "	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
PtpAffx.105080.1.S1_s_at	A	A2TS	POPTR_0001s47580	POPTR_0011s17160 (11)//POPTR_0001s47580 (11)	scaffold_1:47714480-47716031(+) (11)//scaffold_11:18755784-18757310(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr3g016950.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105084.1.S1_at	A	A1TS	POPTR_0012s01740	POPTR_0012s01740 (11)	scaffold_12:1324079-1324487(-) (11)	NA	Q5SN75	Probable protein phosphatase 2C 8	AT1G07430.1	highly ABA-induced PP2C gene 2 	LOC_Os01g46760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g009410.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105086.1.S1_s_at	A	A1TS	POPTR_0001s11390	POPTR_0001s11390 (11)	scaffold_1:8849369-8849924(+) (11)	NA	NA	NA	AT1G14430.1	glyoxal oxidase-related protein 	LOC_Os03g15320.1	"glyoxal oxidase-related, putative, expressed"	Medtr1g028280.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105087.1.S1_at	A	A1MS	POPTR_0001s40880	POPTR_0001s40880 (11)	scaffold_1:40470148-40470629(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105099.1.A1_at	A	A1TS	POPTR_0009s02750	POPTR_0009s02750 (9)	scaffold_9:3515032-3515130(+) (9)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.105119.1.S1_at	A	A1TS	POPTR_0002s19900	POPTR_0002s19900 (11)	scaffold_2:15836119-15836937(-) (11)	NA	NA	NA	AT1G02660.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g15000.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.105133.1.S1_at	A	A1TS	POPTR_0006s13750	POPTR_0006s13750 (11)	scaffold_6:10974493-10975277(+) (11)	NA	Q40134	DNA repair protein RAD51 homolog	AT5G20850.1	RAS associated with diabetes protein 51 	LOC_Os11g40150.1	"DNA repair protein Rad51, putative, expressed"	Medtr8g133290.1	"AAA ATPase; Rad51, N-terminal "	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.105150.1.S1_at	A	A1TS	POPTR_0014s09570	POPTR_0014s09570 (10)	scaffold_14:7142671-7143592(+) (10)	NA	Q9M160	Uncharacterized protein At4g00950	AT4G00950.1	Protein of unknown function (DUF688) 	NA	NA	Medtr1g009040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105151.1.S1_s_at	A	A1TS	POPTR_0014s15610	POPTR_0014s15610 (11)	scaffold_14:11631356-11633462(+) (11)	NA	Q9SHZ3	Nucleobase-ascorbate transporter 1	AT2G05760.1	Xanthine/uracil permease family protein 	LOC_Os09g15170.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr3g109940.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.105165.1.S1_at	A	A1TS	POPTR_0013s13080	POPTR_0013s13080 (10)	scaffold_13:13660496-13660691(+) (10)	NA	NA	NA	AT3G59670.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37440.2); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os05g30340.2	expressed protein	Medtr4g128490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105170.1.S1_s_at	A	A1TS	POPTR_0014s12220	POPTR_0014s12220 (11)	scaffold_14:9031956-9032329(+) (11)	NA	Q9LXX6	Probable exocyst complex component 6	AT4G02350.1	exocyst complex component sec15B 	LOC_Os01g24950.2	"exocyst complex component 6, putative, expressed"	Medtr1g107350.1	Exocyst complex subunit Sec15-like 	GO:0006904|vesicle docking during exocytosis	NA	GO:0000145|exocyst
PtpAffx.105178.1.S1_at	A	A1TS	POPTR_0001s34160	POPTR_0001s34160 (11)	scaffold_1:32303707-32303916(+) (11)	NA	C1A3Z5	50S ribosomal protein L13	AT3G01790.2	Ribosomal protein L13 family protein 	LOC_Os08g06474.1	"ribosomal protein L13, putative"	Medtr3g106560.1	Ribosomal protein L13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.105190.1.S1_at	A	A1TS	POPTR_0009s11230	POPTR_0009s11230 (10)	scaffold_9:9395640-9396042(+) (10)	NA	Q6CMG4	Diphthamide biosynthesis protein 3	AT2G15910.2	CSL zinc finger domain-containing protein 	LOC_Os06g45070.2	"diphthamide biosynthesis protein 3, putative, expressed"	Medtr4g092880.1	"Zinc finger, DHP-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105198.1.S1_at	A	A1TS	POPTR_0005s06680	POPTR_0005s06680 (11)	scaffold_5:4482545-4484463(+) (11)	NA	Q9SS90	E3 ubiquitin-protein ligase RGLG1	AT5G63970.2	Copine (Calcium-dependent phospholipid-binding protein) family 	LOC_Os01g73000.2	"copine, putative, expressed"	Medtr3g143100.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105201.1.S1_at	A	A1TS	POPTR_0016s07150	POPTR_0016s07150 (11)	scaffold_16:4990345-4991219(+) (11)	NA	Q8CIB9	N-acetyltransferase ESCO2	AT4G31400.1	damaged DNA binding;DNA-directed DNA polymerases 	LOC_Os04g42120.1	"N-acetyltransferase ESCO2, putative, expressed"	Medtr2g123380.1	UMUC-like DNA-repair protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105210.1.S1_s_at	A	A1TS	POPTR_0006s01700	POPTR_0006s01700 (11)	scaffold_6:1043502-1043906(+) (11)	NA	Q9FMF6	"Pentatricopeptide repeat-containing protein At5g64320, mitochondrial"	AT5G64320.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g22370.1	"retrotransposon protein, putative, unclassified"	Medtr5g097270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105212.1.S1_at	A	A1TS	POPTR_0010s05760	POPTR_0010s05760 (9)	scaffold_10:7239181-7239724(+) (9)	NA	Q9FXE4	Probable protein phosphatase 2C 14	AT1G67820.1	Protein phosphatase 2C family protein 	LOC_Os03g18150.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105219.1.S1_at	A	A1TS	POPTR_0009s09970	POPTR_0009s09970 (11)	scaffold_9:8700241-8702073(+) (11)	NA	NA	NA	AT4G34190.1	stress enhanced protein 1 	LOC_Os10g25570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105226.2.S1_s_at	A	A1TS	POPTR_0005s09520	POPTR_0005s09520 (11)	scaffold_5:6641985-6642097(+) (11)	NA	Q96499	60S ribosomal protein L44	AT4G14320.1	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.105226.3.S1_at	A	A1MS	POPTR_0005s09520	POPTR_0005s09520 (11)	scaffold_5:6641787-6641905(+) (11)	NA	Q96499	60S ribosomal protein L44	AT4G14320.1	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10525.1.S1_at	A	A1TS	POPTR_0019s03550	POPTR_0019s03550 (10)	scaffold_19:3640252-3640717(-) (10)	NA	Q80Y84	Lysine-specific demethylase 5B	AT1G08620.2	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os05g10770.1	"transcription factor jumonji, putative, expressed"	Medtr4g137840.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; Zinc finger, C5HC2-type "	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.105271.1.S1_at	A	A1TS	POPTR_0006s03080	POPTR_0006s03080 (11)	scaffold_6:1948393-1949743(-) (11)	NA	Q2HJC9	Polyglutamine-binding protein 1	AT2G41020.1	WW domain-containing protein 	LOC_Os01g68760.1	"WW domain containing protein, expressed"	Medtr6g012950.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase); WW/Rsp5/WWP "	NA	GO:0005515|protein binding	NA
PtpAffx.105282.1.S1_s_at	A	A1TS	POPTR_0002s24780	POPTR_0002s24780 (11)	scaffold_2:22047062-22047433(+) (11)	NA	NA	NA	AT3G25130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). 	LOC_Os11g26990.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105300.1.S1_at	A	A1TS	POPTR_0008s05670	POPTR_0008s05670 (11)	scaffold_8:3296855-3297810(+) (11)	NA	Q8WXF0	Serine/arginine-rich splicing factor 12	AT3G13570.1	SC35-like splicing factor 30A 	LOC_Os02g15310.1	"RNA recognition motif containing protein, expressed"	Medtr5g087290.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.105317.1.S1_at	A	A1TS	POPTR_0006s29190	POPTR_0006s29190 (11)	scaffold_6:26642269-26642790(+) (11)	NA	Q8GXB7	tRNA (guanine-N(7)-)-methyltransferase	AT5G24840.1	tRNA (guanine-N-7) methyltransferase 	LOC_Os06g12990.1	"tRNA methyltransferase, putative, expressed"	Medtr3g132800.1	Putative methyltransferase 	GO:0044260|cellular macromolecule metabolic process||GO:0006400|tRNA modification	GO:0008176|tRNA (guanine-N7-)-methyltransferase activity	NA
PtpAffx.10532.1.S1_a_at	A	A1TS	POPTR_0018s11930	POPTR_0018s11930 (11)	scaffold_18:12571566-12572222(+) (11)	NA	Q2TA14	Lysosomal Pro-X carboxypeptidase	AT2G24280.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g43930.1	"OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.105331.1.S1_s_at	A	A1TS	POPTR_0003s12480	POPTR_0003s12480 (11)	scaffold_3:13042972-13043134(+) (11)	NA	Q5RBB3	RNA-binding protein NOB1	AT5G41190.1	"CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g02360.1	expressed protein	Medtr4g149620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105332.1.S1_at	A	A1TS	POPTR_0006s25380	POPTR_0006s25380 (11)	scaffold_6:23769099-23769521(+) (11)	NA	O82318	Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790	AT2G25790.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os02g02140.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr3g130450.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.105333.1.S1_at	A	A1TS	POPTR_0010s08110	POPTR_0010s08110 (9)	scaffold_10:9047740-9047891(-) (9)	NA	P42158	Casein kinase I isoform delta-like	AT3G23340.1	casein kinase I-like 10 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.105366.1.S1_s_at	A	A1TS	POPTR_0004s16530	POPTR_0004s16530 (11)	scaffold_4:16974667-16975066(+) (11)	NA	Q7FGZ2	DEAD-box ATP-dependent RNA helicase 1	AT4G15850.1	RNA helicase 1 	LOC_Os02g55260.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g085470.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.105368.1.S1_at	A	A1TS	POPTR_0004s11020	POPTR_0004s11020 (9)	scaffold_4:9626201-9626682(+) (9)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105370.1.S1_s_at	A	A1TS	POPTR_0005s08530	POPTR_0005s08530 (11)	scaffold_5:5935255-5937526(+) (11)	NA	Q9LV85	Protein CPR-5	AT5G64930.1	"CPR5 protein, putative "	LOC_Os02g53070.1	"HYS1, putative, expressed"	Medtr3g144950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105402.1.S1_at	A	A1TS	POPTR_0001s47440	POPTR_0001s47440 (11)	scaffold_1:47636287-47636884(-) (11)	NA	Q5SSW2	Proteasome activator complex subunit 4	AT3G13330.1	proteasome activating protein 200 	LOC_Os06g19730.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105423.1.S1_s_at	A	A1TS	POPTR_0014s11370	POPTR_0014s11370 (11)	scaffold_14:8466683-8466919(-) (11)	NA	Q93XK2	Stachyose synthase	AT4G01970.1	stachyose synthase 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr4g136550.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105443.1.S1_at	A	A1TS	POPTR_0017s02950	POPTR_0017s02950 (11)	scaffold_17:2125142-2125625(+) (11)	NA	Q9GKX6	Aldose 1-epimerase	AT3G17940.1	Galactose mutarotase-like superfamily protein 	LOC_Os10g06720.1	"aldose 1-epimerase, putative, expressed"	Medtr6g083370.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.10545.1.S1_at	A	A1TS	POPTR_0004s10360	POPTR_0004s10360 (10)	scaffold_4:8901737-8902004(-) (10)	NA	Q95245	Cytochrome b561	AT5G38630.1	cytochrome B561-1 	LOC_Os08g29520.1	"cytochrome b561, putative, expressed"	AC235674_2.2	Cytochrome b561 / ferric reductase transmembrane AC235674.1 14925-10160 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.10545.2.S1_a_at	A	A1TS	POPTR_0004s10360	POPTR_0004s10360 (11)	scaffold_4:8903577-8903623(-) (11)	NA	Q95245	Cytochrome b561	AT5G38630.1	cytochrome B561-1 	LOC_Os08g29520.1	"cytochrome b561, putative, expressed"	AC235674_2.2	Cytochrome b561 / ferric reductase transmembrane AC235674.1 14925-10160 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.105524.1.S1_at	A	A1TS	POPTR_0013s11730	POPTR_0013s11730 (11)	scaffold_13:12384927-12385411(-) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G09580.1	SNARE associated Golgi protein family 	LOC_Os03g49700.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105555.2.S1_s_at	A	A1TS	POPTR_0002s11970	POPTR_0002s11970 (11)	scaffold_2:8870381-8870851(-) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT3G03990.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g10620.3	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g023380.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105561.1.S1_s_at	A	A1TS	POPTR_0010s07230	POPTR_0010s07230 (11)	scaffold_10:8360689-8361074(+) (11)	NA	NA	NA	AT3G23980.1	BLISTER 	LOC_Os01g68380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1056.1.S1_at	A	A1TS	POPTR_0004s15270	POPTR_0004s15270 (11)	scaffold_4:15937341-15937573(+) (11)	NA	Q940H6	Serine/threonine-protein kinase SRK2E	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os03g41460.1	"CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g096830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.105618.1.S1_at	A	A1TS	POPTR_0005s23080	POPTR_0005s23080 (11)	scaffold_5:21921280-21922596(-) (11)	NA	P40983	Uncharacterized protein in xynA 3'region (Fragment)	AT1G03160.1	FZO-like 	LOC_Os05g32390.1	"FZL, putative, expressed"	Medtr1g086430.1	Dynamin; Thiamine monophosphate synthase 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.105621.1.S1_at	A	A1TS	POPTR_0006s18340	POPTR_0006s18340 (11)	scaffold_6:16729063-16729866(+) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os02g05840.1	"VIL2 protein, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105648.1.S1_at	A	A1TS	POPTR_0018s03560	POPTR_0018s03560 (11)	scaffold_18:3087756-3087793(-) (11)	NA	Q9SV21	Coatomer subunit beta-1	AT4G31480.2	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138720.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
PtpAffx.105648.1.S1_s_at	A	A1TS	POPTR_0018s03560	POPTR_0018s03560 (10)	scaffold_18:3086872-3087810(-) (10)	NA	Q9SV21	Coatomer subunit beta-1	AT4G31480.2	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138720.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
PtpAffx.105665.1.S1_at	A	A1TS	POPTR_0001s38700	POPTR_0001s38700 (9)	scaffold_1:37878552-37879040(+) (9)	NA	Q54WR5	Coiled-coil domain-containing protein 94 homolog	AT1G17130.1	Family of unknown function (DUF572)  	LOC_Os01g40610.1	"coiled-coil domain-containing protein, putative, expressed"	Medtr8g008480.1	Protein of unknown function DUF572 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105684.1.S1_at	A	A1TS	POPTR_0015s14650	POPTR_0015s14650 (11)	scaffold_15:14171420-14171946(-) (11)	NA	Q6GLP4	Protein RMD5 homolog A	AT4G37880.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os06g38940.2	"RMD5 homolog A, putative, expressed"	Medtr8g078780.1	"Zinc finger, RING-type; Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105685.1.S1_at	A	A1MS	POPTR_0014s02990	POPTR_0014s02990 (9)	scaffold_14:2452191-2452685(-) (9)	NA	NA	NA	AT4G33350.1	Tic22-like family protein 	LOC_Os06g11020.1	"tic22-like family domain containing protein, expressed"	Medtr3g147870.1	Tic22-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105744.2.S1_at	A	A1TS	POPTR_0003s06890	POPTR_0003s06890 (9)	scaffold_3:8430481-8431792(-) (9)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105744.3.A1_at	A	A1MS	POPTR_0001s16420	POPTR_0001s16420 (11)	scaffold_1:13218426-13218538(+) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105756.1.S1_at	A	A1TS	POPTR_0001s25590	POPTR_0001s25590 (10)	scaffold_1:24667129-24667654(+) (10)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105772.1.S1_at	A	A1TS	POPTR_0018s13160	POPTR_0018s13160 (9)	scaffold_18:13602672-13602793(+) (9)	NA	NA	NA	AT2G26670.1	Plant haem oxygenase (decyclizing) family protein 	LOC_Os06g40080.1	"heme oxygenase 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1058.1.S1_a_at	A	A1TS	POPTR_0014s15650	POPTR_0014s15650 (11)	scaffold_14:11663771-11663909(-) (11)	NA	Q9FLP6	Small ubiquitin-related modifier 2	AT5G55160.1	small ubiquitin-like modifier 2 	LOC_Os01g68950.1	"ubiquitin family domain containing protein, expressed"	AC225519_6.1	Ubiquitin; Inorganic pyrophosphatase AC225519.5 35386-39197 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1058.3.S1_a_at	A	A1TS	POPTR_0018s13700	POPTR_0018s13700 (11)	scaffold_18:13986578-13986741(+) (11)	NA	Q9LHP1	60S ribosomal protein L7-4	AT3G13580.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.1058.3.S1_s_at	A	A1TS	POPTR_0018s13700	POPTR_0018s13700 (11)	scaffold_18:13986148-13986495(+) (11)	NA	Q9LHP1	60S ribosomal protein L7-4	AT3G13580.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.1058.4.S1_s_at	A	A3TS	POPTR_0002s21680	POPTR_0014s15650 (11)//POPTR_0002s21680 (11)//POPTR_0002s21690 (10)	scaffold_14:11663994-11665206(-) (11)//scaffold_2:18230898-18232061(-) (11)//scaffold_2:18241782-18242891(-) (10)	NA	Q9FLP6	Small ubiquitin-related modifier 2	AT5G55160.1	small ubiquitin-like modifier 2 	LOC_Os01g68950.1	"ubiquitin family domain containing protein, expressed"	AC225519_6.1	Ubiquitin; Inorganic pyrophosphatase AC225519.5 35386-39197 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105803.1.A1_at	A	A1TA	POPTR_0012s14890	POPTR_0012s14890 (11)	scaffold_12:14606584-14607119(-) (11)	NA	Q5S2C4	Protein NAP1	AT2G35110.1	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105803.2.S1_a_at	A	A1TS	POPTR_0012s14890	POPTR_0012s14890 (11)	scaffold_12:14606805-14607265(+) (11)	NA	Q5S2C4	Protein NAP1	AT2G35110.1	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105803.4.A1_at	A	A2TA	POPTR_0015s15040	POPTR_0015s15040 (11)//POPTR_0015s15090 (11)	scaffold_15:14408148-14408681(-) (11)//scaffold_15:14461616-14462149(-) (11)	POPTR_0012s14890 (6)	Q5S2C4	Protein NAP1	AT2G35110.2	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10586.1.S1_at	A	A1TS	POPTR_0001s03620	POPTR_0001s03620 (9)	scaffold_1:2880247-2880720(-) (9)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os02g08440.1	"OsWRKY71 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g022070.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.10586.2.S1_at	A	A1TS	POPTR_0003s18060	POPTR_0003s18060 (11)	scaffold_3:17276758-17277275(+) (11)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os09g25060.1	"OsWRKY76 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g022070.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.105861.1.A1_at	A	A1TS	POPTR_0011s12020	POPTR_0011s12020 (11)	scaffold_11:14805722-14807190(+) (11)	NA	Q9LJR3	Protein SPA1-RELATED 3	AT3G15354.1	SPA1-related 3 	LOC_Os01g52640.3	"suppressor of phythchrome A, putative, expressed"	Medtr2g100630.1	Protein kinase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105870.1.S1_at	A	A1TS	POPTR_0004s23930	POPTR_0004s23930 (11)	scaffold_4:22548836-22549096(+) (11)	NA	P69834	"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic"	AT2G02500.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os01g66360.1	"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed"	NA	NA	GO:0008299|isoprenoid biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.105870.1.S1_s_at	A	A1TS	POPTR_0004s23930	POPTR_0004s23930 (11)	scaffold_4:22549222-22551855(+) (11)	NA	P69834	"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic"	AT2G02500.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os01g66360.1	"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed"	NA	NA	GO:0008299|isoprenoid biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.105916.1.S1_at	A	A1TS	POPTR_0001s34770	POPTR_0001s34770 (11)	scaffold_1:33014544-33014934(+) (11)	NA	Q16706	Alpha-mannosidase 2	AT5G14950.1	golgi alpha-mannosidase II 	LOC_Os06g13650.2	"alpha-mannosidase 2, putative, expressed"	Medtr6g009490.1	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0005975|carbohydrate metabolic process	GO:0004559|alpha-mannosidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.105922.1.A1_at	A	A1TS	POPTR_0003s10840	POPTR_0003s10840 (10)	scaffold_3:11701404-11701962(-) (10)	NA	Q5R8W6	Luc7-like protein 3	AT5G51410.3	LUC7 N_terminus domain-containing protein 	LOC_Os07g27300.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105933.1.S1_at	A	A1TS	POPTR_0001s17020	POPTR_0001s17020 (10)	scaffold_1:13856628-13857424(+) (10)	NA	NA	NA	AT1G72650.2	TRF-like 6 	LOC_Os02g53670.1	"MYB family transcription factor, putative, expressed"	Medtr8g024240.1	Small GTP-binding protein domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105957.1.S1_s_at	A	A3TS	POPTR_0018s13570	POPTR_0018s13580 (11)//POPTR_0018s13570 (11)//POPTR_0006s07150 (10)	scaffold_18:13853143-13854197(-) (11)//scaffold_18:13858256-13859305(-) (11)//scaffold_6:5135217-5136150(-) (10)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10597.1.A1_at	A	A1MS	POPTR_0018s05160	POPTR_0018s05160 (10)	scaffold_18:4661053-4661666(-) (11)	NA	Q9SZI6	Putative GATA transcription factor 22	AT4G26150.1	cytokinin-responsive gata factor 1 	LOC_Os06g37450.1	"GATA zinc finger domain containing protein, expressed"	Medtr2g045320.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.10597.2.S1_at	A	A1TS	POPTR_0006s24560	POPTR_0006s24560 (10)	scaffold_6:23149526-23149829(+) (10)	NA	Q9SZI6	Putative GATA transcription factor 22	AT4G26150.1	cytokinin-responsive gata factor 1 	LOC_Os06g37450.1	"GATA zinc finger domain containing protein, expressed"	Medtr2g045320.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.105974.1.A1_at	A	A1TA	POPTR_0010s14030	POPTR_0010s14030 (11)	scaffold_10:13737108-13737586(-) (11)	NA	A0AQW4	Transcription factor TCP12	AT1G68800.1	TCP domain protein 12 	LOC_Os03g49880.1	"TCP family transcription factor, putative, expressed"	AC233675_3.1	TCP transcription factor AC233675.1 11574-12645 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105974.1.S1_s_at	A	A1TS	POPTR_0010s14030	POPTR_0010s14030 (11)	scaffold_10:13737573-13738025(+) (11)	NA	A0AQW4	Transcription factor TCP12	AT1G68800.1	TCP domain protein 12 	LOC_Os03g49880.1	"TCP family transcription factor, putative, expressed"	AC233675_3.1	TCP transcription factor AC233675.1 11574-12645 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105995.1.S1_s_at	A	A2TS	POPTR_0002s01050	POPTR_0005s27320 (11)//POPTR_0002s01050 (11)	scaffold_2:550306-551945(+) (11)//scaffold_5:25023916-25025532(-) (11)	NA	P56941	Niemann-Pick C1 protein	AT1G42470.1	Patched family protein 	LOC_Os04g47590.1	"niemann-Pick C1 protein precursor, putative, expressed"	Medtr5g106700.1	Sterol-sensing 5TM box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1060.1.A1_at	A	A1TS	POPTR_0001s24900	POPTR_0001s24900 (11)	scaffold_1:24178474-24179163(+) (11)	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G29070.2	Ubiquitin fusion degradation UFD1 family protein 	LOC_Os02g08480.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.106009.1.S1_at	A	A1TS	POPTR_0001s40530	POPTR_0001s40530 (10)	scaffold_1:39984651-39987159(-) (11)	NA	Q8L7H1	F-box/LRR-repeat protein At4g14103	AT4G14103.1	F-box/RNI-like superfamily protein 	LOC_Os01g52980.1	"OsFBX23 - F-box domain containing protein, expressed"	Medtr8g021310.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10601.1.A1_at	A	A1MS	POPTR_0011s02610	POPTR_0011s02610 (11)	scaffold_11:2514753-2515153(-) (11)	NA	P51373	Uncharacterized protein ycf23	NA	NA	LOC_Os05g49060.1	"uncharacterized protein ycf23, putative, expressed"	Medtr4g165580.1	Ribulose-phosphate binding barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106020.1.S1_s_at	A	A1TS	POPTR_0011s05260	POPTR_0011s05260 (11)	scaffold_11:5140177-5142215(+) (11)	NA	Q9M0Y8	Vesicle-fusing ATPase	AT4G04910.1	AAA-type ATPase family protein 	LOC_Os05g44310.1	"vesicle-fusing ATPase, putative, expressed"	AC233659_3.1	AAA ATPase AC233659.1 11110-14927 E EGN_Mt090430 200	NA	GO:0005524|ATP binding	NA
PtpAffx.10604.1.A1_s_at	A	A2TS	POPTR_0001s12930	POPTR_0003s16030 (11)//POPTR_0001s12930 (11)	scaffold_1:10023898-10024411(-) (11)//scaffold_3:15654309-15654807(-) (11)	NA	A0LTY8	Transaldolase	AT5G13420.1	Aldolase-type TIM barrel family protein 	LOC_Os01g70170.1	"transaldolase, putative, expressed"	Medtr7g006100.1	Transaldolase subfamily; 	GO:0005975|carbohydrate metabolic process	NA	NA
PtpAffx.10604.2.S1_at	A	A1TS	POPTR_0007s13920	POPTR_0007s13920 (11)	scaffold_7:13920631-13920727(-) (11)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.10604.2.S1_s_at	A	A1TS	POPTR_0007s13920	POPTR_0007s13920 (11)	scaffold_7:13920761-13921723(-) (11)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.10604.4.A1_at	A	A1TA	POPTR_0001s05740	POPTR_0001s05740 (11)	scaffold_1:4420606-4420687(-) (11)//scaffold_1:4434848-4434929(-) (11)//scaffold_1:4470701-4470782(-) (11)	POPTR_0003s20330 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.10604.5.A1_at	A	A1MS	POPTR_0003s16030	POPTR_0003s16030 (11)	scaffold_3:15654505-15654684(-) (11)	NA	A9WT40	Transaldolase	AT5G13420.1	Aldolase-type TIM barrel family protein 	LOC_Os01g70170.1	"transaldolase, putative, expressed"	Medtr7g006100.1	Transaldolase subfamily; 	GO:0005975|carbohydrate metabolic process	NA	NA
PtpAffx.10604.6.A1_at	A	A1TS	POPTR_0001s12930	POPTR_0001s12930 (11)	scaffold_1:10023690-10024024(-) (11)	NA	A0LTY8	Transaldolase	AT5G13420.1	Aldolase-type TIM barrel family protein 	LOC_Os01g70170.1	"transaldolase, putative, expressed"	Medtr7g006100.1	Transaldolase subfamily; 	GO:0005975|carbohydrate metabolic process	NA	NA
PtpAffx.106060.2.A1_a_at	A	A1MS	POPTR_0013s06470	POPTR_0013s06470 (11)	scaffold_13:5054576-5054742(-) (11)	NA	O14981	TATA-binding protein-associated factor 172	AT3G54280.1	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases 	LOC_Os02g06592.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr4g041710.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.1061.1.A1_s_at	A	A1TS	POPTR_0019s08640	POPTR_0019s08640 (11)	scaffold_19:10176812-10177781(+) (11)	NA	NA	NA	AT5G05240.1	Uncharacterised conserved protein (UCP030365) 	LOC_Os02g03940.1	expressed protein	Medtr1g008510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106123.1.A1_at	A	A1TS	POPTR_0018s00280	POPTR_0018s00280 (10)	scaffold_18:186492-188425(-) (10)	NA	NA	NA	AT5G11600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g51754.1	expressed protein	Medtr1g007400.1	"Contains a weak similarity to Rap8, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106123.2.A1_at	A	A1MS	POPTR_0018s00280	POPTR_0018s00280 (9)	scaffold_18:186064-186609(-) (11)	NA	NA	NA	AT5G11600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g51754.1	expressed protein	Medtr1g007400.1	"Contains a weak similarity to Rap8, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106132.1.S1_at	A	A1TS	POPTR_0003s04060	POPTR_0003s04060 (10)	scaffold_3:4695894-4696074(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106133.1.S1_s_at	A	A1TS	POPTR_0017s02820	POPTR_0017s02820 (11)	scaffold_17:2026196-2026627(+) (11)	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os03g12250.1	"atypical receptor-like kinase MARK, putative, expressed"	Medtr5g085840.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.106139.2.A1_s_at	A	A1TS	POPTR_0006s09260	POPTR_0006s09260 (11)	scaffold_6:6807480-6809098(-) (11)	NA	Q8LG95	Pentatricopeptide repeat-containing protein At4g21190	AT1G04590.1	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os12g02950.1	"EMB2748, putative, expressed"	Medtr5g012280.1	"pentatricopeptide repeat-containing protein {Ara, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10616.1.S1_a_at	A	A2TS	POPTR_0002s06060	POPTR_0002s06060 (11)//POPTR_0005s22380 (11)	scaffold_2:4042000-4042043(+) (11)//scaffold_5:21335561-21335604(-) (11)	NA	Q9XGA1	Ribose-phosphate pyrophosphokinase 4	AT2G42910.1	Phosphoribosyltransferase family protein 	LOC_Os02g48390.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g083370.1	Ribose-phosphate pyrophosphokinase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.10616.1.S1_at	A	A1MS	POPTR_0002s06060	POPTR_0002s06060 (9)	scaffold_2:4041829-4042372(+) (9)	NA	Q9XGA1	Ribose-phosphate pyrophosphokinase 4	AT2G42910.1	Phosphoribosyltransferase family protein 	LOC_Os02g48390.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g083370.1	Ribose-phosphate pyrophosphokinase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.10616.2.S1_a_at	A	A1TS	POPTR_0005s22380	POPTR_0005s22380 (11)	scaffold_5:21335359-21335571(-) (11)	NA	Q9XGA1	Ribose-phosphate pyrophosphokinase 4	AT2G42910.1	Phosphoribosyltransferase family protein 	LOC_Os02g48390.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g083370.1	Ribose-phosphate pyrophosphokinase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.10616.2.S1_at	A	A1TS	POPTR_0005s22380	POPTR_0005s22380 (11)	scaffold_5:21335195-21335767(-) (11)	NA	Q9XGA1	Ribose-phosphate pyrophosphokinase 4	AT2G42910.1	Phosphoribosyltransferase family protein 	LOC_Os02g48390.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g083370.1	Ribose-phosphate pyrophosphokinase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.106163.1.A1_at	A	A1TS	POPTR_0003s19550	POPTR_0003s19550 (9)	scaffold_3:18245470-18248303(-) (11)	NA	NA	NA	AT5G12330.4	Lateral root primordium (LRP) protein-related 	LOC_Os01g72490.2	"LRP1, putative, expressed"	Medtr8g042820.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106168.1.S1_at	A	A1TS	POPTR_0003s12670	POPTR_0003s12670 (10)	scaffold_3:13185121-13186167(+) (10)	NA	P41230	Lysine-specific demethylase 5C	AT1G63490.1	transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	Medtr5g010400.1	"transcription factor jumonji, related "	NA	NA	GO:0005634|nucleus
PtpAffx.106173.1.S1_s_at	A	A4TS	POPTR_0002s07480	POPTR_0487s00210 (11)//POPTR_0487s00230 (11)//POPTR_0002s07500 (11)//POPTR_0002s07480 (11)	scaffold_2:5110595-5110702(+) (11)//scaffold_2:5122742-5122849(+) (11)//scaffold_487:4983-5090(+) (11)//scaffold_487:13551-13658(+) (11)	NA	NA	NA	AT1G31130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os08g01590.2	expressed protein	Medtr4g165710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106177.1.S1_at	A	A1MS	POPTR_0005s28130	POPTR_0005s28130 (10)	scaffold_5:25488239-25488974(-) (10)	NA	Q2UMH3	"Histone-lysine N-methyltransferase, H3 lysine-4 specific"	AT5G42400.1	SET domain protein 25 	LOC_Os12g41900.1	"SET domain containing protein, expressed"	Medtr4g089540.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106193.1.S1_s_at	A	A1TS	POPTR_0018s11150	POPTR_0018s11150 (11)	scaffold_18:11934772-11934999(-) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106193.2.S1_at	A	A1TS	POPTR_0006s19380	POPTR_0006s19380 (11)	scaffold_6:18426704-18426757(-) (11)	NA	O15818	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106200.1.S1_s_at	A	A1TS	POPTR_0017s12210	POPTR_0017s12210 (11)	scaffold_17:12392614-12392849(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G61430.1	NAC domain containing protein 100 	LOC_Os04g38720.1	"no apical meristem protein, putative, expressed"	Medtr6g013180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.106214.1.A1_at	A	A1MS	POPTR_0006s08310	POPTR_0006s08310 (10)	scaffold_6:6046706-6047178(+) (10)	NA	P45482	Cell division protein ftsZ	AT3G52750.1	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.106228.1.A1_at	A	A1TS	POPTR_0004s11550	POPTR_0004s11550 (11)	scaffold_4:10343025-10343339(+) (11)	NA	Q9FVW3	Probable esterase At1g33990	AT3G29770.1	methyl esterase 11 	LOC_Os07g41230.1	"esterase, putative, expressed"	Medtr3g012890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106236.1.S1_s_at	A	A1TS	POPTR_0001s31270	POPTR_0001s31270 (11)	scaffold_1:29603790-29605833(+) (11)	NA	Q31R08	GTP-binding protein lepA	AT5G08650.1	Small GTP-binding protein 	LOC_Os02g06300.1	"GTP-binding protein lepA, putative, expressed"	Medtr7g009110.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.106238.1.A1_at	A	A1TS	POPTR_0012s07180	POPTR_0012s07180 (11)	scaffold_12:7963601-7964576(+) (11)	NA	Q9ZPC0	"Isochorismate synthase, chloroplastic"	AT1G18870.1	isochorismate synthase 2 	LOC_Os09g19734.1	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr4g104110.1	Anthranilate synthase component I and chorismate binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106245.1.A1_at	A	A1TS	POPTR_0016s05660	POPTR_0016s05660 (11)	scaffold_16:3588710-3589150(-) (11)	NA	NA	NA	AT3G57400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52500.1); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106267.1.A1_at	A	A1TS	POPTR_0001s04370	POPTR_0001s04370 (10)	scaffold_1:3473684-3474007(+) (10)	NA	Q8KBY0	Acetyl-coenzyme A synthetase	AT1G55320.1	acyl-activating enzyme 18 	LOC_Os03g59080.1	"AMP-binding enzyme, putative, expressed"	Medtr4g134030.1	"AMP-dependent synthetase and ligase; Legume lectin, alpha "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.106286.1.S1_at	A	A1TS	POPTR_0002s25280	POPTR_0002s25280 (11)	scaffold_2:22401531-22402426(+) (11)	NA	NA	NA	AT5G48470.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g23790.2	expressed protein	Medtr1g008560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106356.1.S1_s_at	A	A1TS	POPTR_0005s15830	POPTR_0005s15830 (11)	scaffold_5:12449815-12450340(+) (11)	NA	Q9SFE4	Ethylene-responsive transcription factor ERF012	AT1G21910.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g10780.1	"AP2 domain containing protein, expressed"	Medtr5g065700.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.106389.1.A1_at	A	A2TS	POPTR_0005s11980	POPTR_0007s13680 (11)//POPTR_0005s11980 (11)	scaffold_5:8761940-8762245(-) (11)//scaffold_7:13700899-13701204(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT5G66330.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g43250.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g021240.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.1064.1.A1_at	A	A1TS	POPTR_0003s07070	POPTR_0003s07070 (11)	scaffold_3:8684772-8685352(+) (11)	NA	Q9SHI7	Ubiquitin-conjugating enzyme E2 34	AT1G17280.2	ubiquitin-conjugating enzyme 34 	LOC_Os06g09330.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g026810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.106423.1.A1_s_at	A	A1TS	POPTR_0009s11860	POPTR_0009s11860 (11)	scaffold_9:9766574-9767040(-) (11)	NA	NA	NA	AT1G75180.3	Erythronate-4-phosphate dehydrogenase family protein 	LOC_Os03g56420.1	expressed protein	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106438.1.A1_at	A	A1TS	POPTR_0008s07210	POPTR_0008s07210 (11)	scaffold_8:4379608-4379973(-) (11)	NA	Q9LYN6	Probable inactive receptor-like protein kinase At3g56050	AT2G40270.2	Protein kinase family protein 	LOC_Os03g18370.1	"MRH1, putative, expressed"	Medtr1g102890.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.106448.1.A1_s_at	A	A1TS	POPTR_0014s12360	POPTR_0014s12360 (11)	scaffold_14:9127655-9127842(+) (11)	NA	Q99685	Monoglyceride lipase	AT3G62860.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g29974.1	"lipase, putative, expressed"	Medtr8g068300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106463.1.A1_at	A	A1TS	POPTR_0006s19810	POPTR_0006s19810 (11)	scaffold_6:18825500-18827118(-) (11)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
PtpAffx.10648.1.S1_s_at	A	A2TS	POPTR_0005s02390	POPTR_0013s01620 (11)//POPTR_0005s02390 (11)	scaffold_13:916492-917781(+) (11)//scaffold_5:1541276-1542527(+) (11)	NA	Q9M9W3	Serine/threonine-protein phosphatase PP1 isozyme 9	AT5G27840.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g24750.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g138660.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.10648.2.S1_a_at	A	A1TS	POPTR_0005s02390	POPTR_0005s02390 (11)	scaffold_5:1543598-1543960(+) (11)	NA	Q9M9W3	Serine/threonine-protein phosphatase PP1 isozyme 9	AT5G27840.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g24750.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g138660.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.106502.1.A1_s_at	A	A1TS	POPTR_0002s25030	POPTR_0002s25030 (9)	scaffold_2:22233870-22234095(-) (9)	NA	Q11066	Uncharacterized HIT-like protein Rv1262c/MT1300	AT5G48545.1	histidine triad nucleotide-binding 3 	LOC_Os11g18990.1	"histidine triad family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10652.1.S1_at	A	A1TS	POPTR_0009s11870	POPTR_0009s11870 (10)	scaffold_9:9776759-9779065(-) (10)	NA	NA	NA	AT4G39300.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g095570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106520.1.A1_at	A	A1TS	POPTR_0003s21820	POPTR_0003s21820 (11)	scaffold_3:19837986-19839208(+) (11)	NA	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10658.1.S1_at	A	A1TS	POPTR_0001s34900	POPTR_0001s34900 (10)	scaffold_1:33123780-33124854(-) (10)	NA	NA	NA	AT5G59710.1	VIRE2 interacting protein 2 	LOC_Os03g52594.3	"CCR4-NOT transcription factor, putative, expressed"	Medtr2g114150.1	NOT2/NOT3/NOT5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.1066.10.S1_a_at	A	A2TS	POPTR_0012s14780	POPTR_0012s14780 (11)//POPTR_0015s14960 (11)	scaffold_12:14529042-14529593(+) (11)//scaffold_15:14356491-14357048(+) (11)	NA	Q93Y22	Coatomer subunit delta	AT5G05010.2	clathrin adaptor complexes medium subunit family protein 	LOC_Os05g24601.1	"coatomer subunit delta, putative, expressed"	Medtr2g122280.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.1066.11.S1_at	A	A1TA	POPTR_0004s03160	POPTR_0004s03160 (11)	scaffold_4:2129790-2130266(+) (11)	NA	Q41932	"Oxygen-evolving enhancer protein 3-2, chloroplastic"	AT4G05180.1	photosystem II subunit Q-2 	LOC_Os07g36080.1	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.1066.2.S1_a_at	A	A1TS	POPTR_0016s10780	POPTR_0016s10780 (11)	scaffold_16:9145147-9145253(-) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.1066.5.A1_x_at	A	A1TS	POPTR_0017s14100	POPTR_0017s14100 (11)	scaffold_17:14276976-14277719(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106600.1.S1_at	A	A1TS	POPTR_0001s24130	POPTR_0001s24130 (9)	scaffold_1:23503654-23503863(-) (9)	NA	O54922	Exocyst complex component 7	AT3G09520.1	exocyst subunit exo70 family protein H4 	LOC_Os09g26820.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr4g079170.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.10663.1.A1_a_at	A	A1TS	POPTR_0009s09640	POPTR_0009s09640 (11)	scaffold_9:8482420-8482670(-) (11)	NA	NA	NA	AT2G15000.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 70 Blast hits to 70 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10663.2.S1_a_at	A	A1TS	POPTR_0001s30600	POPTR_0001s30600 (11)	scaffold_1:29081997-29083550(-) (11)	NA	NA	NA	AT2G15000.5	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 80 Blast hits to 80 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106631.1.S1_at	A	A1MS	POPTR_0002s23140	POPTR_0002s23140 (9)	scaffold_2:20558378-20561523(-) (9)	NA	Q0WMN5	Uncharacterized protein At3g49135	AT3G59300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g67370.1	expressed protein	Medtr5g097250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10664.1.S1_at	A	A1TS	POPTR_0017s04290	POPTR_0017s04290 (11)	scaffold_17:3311996-3313675(-) (11)	NA	Q40532	Mitogen-activated protein kinase homolog NTF4	AT2G43790.1	MAP kinase 6 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g128260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10664.1.S1_s_at	A	A2TS	POPTR_0007s00930	POPTR_0017s04290 (11)//POPTR_0007s00930 (11)	scaffold_17:3311922-3314211(-) (11)//scaffold_7:494842-497158(-) (11)	NA	Q40532	Mitogen-activated protein kinase homolog NTF4	AT2G43790.1	MAP kinase 6 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g128260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10664.2.S1_at	A	A1TS	POPTR_0006s24440	POPTR_0006s24440 (11)	scaffold_6:23050560-23051118(-) (11)	NA	Q84KI6	"UDP-sulfoquinovose synthase, chloroplastic"	AT4G33030.1	sulfoquinovosyldiacylglycerol 1 	LOC_Os05g32140.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr7g107550.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.106656.1.S1_at	A	A1TS	POPTR_0013s11820	POPTR_0013s11820 (11)	scaffold_13:12460841-12462386(-) (11)	NA	Q949X3	"Histidinol-phosphate aminotransferase, chloroplastic"	AT1G71920.1	HISTIDINE BIOSYNTHESIS 6B 	LOC_Os02g47940.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr3g097770.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.10666.1.S1_at	A	A1TS	POPTR_0009s13410	POPTR_0009s13410 (11)	scaffold_9:10669958-10670362(+) (11)	NA	Q9LSS3	tRNA-splicing endonuclease subunit Sen2-2	AT5G60230.2	splicing endonuclease 2 	LOC_Os11g38930.1	"tRNA-splicing endonuclease subunit Sen2, putative, expressed"	Medtr7g111160.1	"tRNA intron endonuclease, catalytic C-terminal "	"GO:0044260|cellular macromolecule metabolic process||GO:0006388|""tRNA splicing, via endonucleolytic cleavage and ligation"""	GO:0000213|tRNA-intron endonuclease activity	NA
PtpAffx.106733.1.A1_at	A	A1TS	POPTR_0002s05880	POPTR_0002s05880 (9)	scaffold_2:3860443-3861410(+) (11)	NA	Q9SHJ8	3-hydroxyisobutyryl-CoA hydrolase-like protein 5	AT1G06550.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os01g54860.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.106779.1.S1_at	A	A1TS	POPTR_0014s08440	POPTR_0014s08440 (11)	scaffold_14:6270854-6271312(-) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1068.1.A1_at	A	A1TS	POPTR_0015s11960	POPTR_0015s11960 (9)	scaffold_15:12428483-12429135(-) (11)	NA	Q67YC9	Uncharacterized protein At4g14100	AT3G23760.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os07g09150.1	expressed protein	Medtr3g151440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10684.1.S1_s_at	A	A1TS	POPTR_0008s01960	POPTR_0008s01960 (11)	scaffold_8:938766-938840(+) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr4g066990.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.106851.1.S1_at	A	A1TS	POPTR_0002s16630	POPTR_0002s16630 (10)	scaffold_2:12445518-12446784(+) (10)	NA	Q5RBU2	"39S ribosomal protein L46, mitochondrial"	AT1G14620.1	decoy 	LOC_Os06g19640.1	"39S ribosomal protein L46, mitochondrial precursor, putative, expressed"	Medtr4g135760.1	"39S ribosomal protein L46, mitochondrial precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10687.1.S1_at	A	A1TS	POPTR_0007s02630	POPTR_0007s02630 (11)	scaffold_7:1549464-1550825(+) (11)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106872.1.A1_at	A	A1TS	POPTR_0002s11300	POPTR_0002s11300 (9)	scaffold_2:8359191-8359838(+) (11)	NA	NA	NA	AT2G35510.1	similar to RCD one 1 	LOC_Os03g12820.2	"ATP8, putative, expressed"	Medtr7g010860.1	"WWE; PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1069.1.S1_at	A	A1TS	POPTR_0006s22110	POPTR_0006s22110 (11)	scaffold_6:21147437-21147903(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G52500.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58840.1	"Eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g105840.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10695.1.A1_at	A	A1TS	POPTR_0015s12020	POPTR_0015s12020 (11)	scaffold_15:12455998-12463140(+) (11)	NA	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129900.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106976.1.S1_s_at	A	A1TS	POPTR_0001s03460	POPTR_0001s03460 (11)	scaffold_1:2797759-2799728(+) (11)	NA	Q9SZ53	Probable protein phosphatase 2C 60	AT4G31860.1	Protein phosphatase 2C family protein 	LOC_Os06g44210.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106982.1.A1_at	A	A1TS	POPTR_0018s12980	POPTR_0018s12980 (11)	scaffold_18:13435630-13436167(-) (11)	NA	NA	NA	AT3G15790.1	methyl-CPG-binding domain 11 	LOC_Os12g42550.1	"methyl-CpG binding domain containing protein, putative, expressed"	Medtr8g120840.1	Methyl-CpG binding 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.106983.1.S1_at	A	A2TS	POPTR_0003s06130	POPTR_0003s06170 (10)//POPTR_0003s06130 (10)	scaffold_3:7549665-7551029(-) (10)//scaffold_3:7587957-7589194(-) (10)	NA	Q55DE7	Ataxin-2 homolog	AT1G54170.1	CTC-interacting domain 3 	LOC_Os02g27950.1	"ataxin-2 related protein, putative, expressed"	Medtr2g120650.1	"Ataxin-2, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10704.1.S1_at	A	A1TS	POPTR_0005s16230	POPTR_0005s16230 (11)	scaffold_5:12951708-12951795(+) (11)	NA	NA	NA	AT1G36990.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). 	NA	NA	Medtr3g098440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107075.1.S1_at	A	A1TS	POPTR_0004s14960	POPTR_0004s14960 (11)	scaffold_4:15614753-15615408(-) (11)	POPTR_0009s10650 (6)	Q8VY06	"Presequence protease 2, chloroplastic/mitochondrial"	AT3G19170.1	presequence protease 1 	LOC_Os02g52390.1	"M16 domain containing zinc peptidase, putative, expressed"	AC151525_23.1	"Small acid-soluble spore protein, alpha/beta type; ; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF AC151525.18 114168-104858 E EGN_Mt090430 200"	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.10708.1.S1_at	A	A1TS	POPTR_0012s08760	POPTR_0012s08760 (11)	scaffold_12:9839717-9839903(+) (11)	NA	O61967	Protein lap1	AT3G11330.1	plant intracellular ras group-related LRR 9 	LOC_Os04g40080.1	"leucine rich repeat containing protein, expressed"	Medtr3g114800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.107099.1.S1_s_at	A	A1TS	POPTR_0004s03730	POPTR_0004s03730 (11)	scaffold_4:2607646-2608111(+) (11)	NA	NA	NA	AT1G11125.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1). 	NA	NA	Medtr2g014420.1	"CK25, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10711.1.S1_at	A	A1TS	POPTR_0010s13590	POPTR_0010s13590 (11)	scaffold_10:13411273-13411343(+) (11)	NA	NA	NA	AT1G13360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04010.1	expressed protein	Medtr4g158300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107115.1.S1_at	A	A1TS	POPTR_0013s12730	POPTR_0013s12730 (9)	scaffold_13:13404477-13406333(-) (9)	POPTR_0019s12240 (7)	Q9LLH9	"Acyl-coenzyme A oxidase 3, peroxisomal"	AT1G06290.1	acyl-CoA oxidase 3 	LOC_Os06g24704.1	"acyl-coenzyme A oxidase, putative, expressed"	Medtr4g109110.1	"Carbohydrate kinase, PfkB; Acyl-CoA dehydrogenase C-terminal-like; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.10713.1.S1_at	A	A1TS	POPTR_0013s06830	POPTR_0013s06830 (10)	scaffold_13:5512904-5514224(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107147.1.S1_at	A	A1TS	POPTR_0008s02540	POPTR_0008s02540 (11)	scaffold_8:1241444-1242356(+) (11)	NA	NA	NA	AT3G52240.1	unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). 	LOC_Os05g37340.1	expressed protein	Medtr1g116860.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107166.1.S1_s_at	A	A1TS	POPTR_0009s05670	POPTR_0009s05670 (11)	scaffold_9:5725727-5729909(+) (11)	NA	P51104	Dihydroflavonol-4-reductase	AT1G51410.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.107166.2.S1_at	A	A1TS	POPTR_0001s26360	POPTR_0001s26360 (11)	scaffold_1:25399835-25403696(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.10717.1.S1_a_at	A	A1TS	POPTR_0004s11780	POPTR_0004s11780 (11)	scaffold_4:10653055-10653339(+) (11)	NA	Q9FNP8	40S ribosomal protein S19-3	AT5G61170.1	Ribosomal protein S19e family protein 	LOC_Os03g31134.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g005130.1	Ribosomal protein S19e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10717.2.S1_at	A	A1TS	POPTR_0004s11780	POPTR_0004s11780 (11)	scaffold_4:10653161-10653283(+) (11)	NA	Q9FNP8	40S ribosomal protein S19-3	AT5G61170.1	Ribosomal protein S19e family protein 	LOC_Os03g31134.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g005130.1	Ribosomal protein S19e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10720.1.S1_at	A	A1TS	POPTR_0008s05620	POPTR_0008s05620 (11)	scaffold_8:3259622-3260053(-) (11)	NA	NA	NA	AT2G39650.1	Protein of unknown function (DUF506)  	LOC_Os01g74250.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr7g094290.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10720.2.S1_a_at	A	A2TS	POPTR_0008s05620	POPTR_0010s21120 (11)//POPTR_0008s05620 (11)	scaffold_10:18533322-18533448(+) (11)//scaffold_8:3262303-3262429(-) (11)	NA	NA	NA	AT2G39650.1	Protein of unknown function (DUF506)  	LOC_Os01g74250.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr7g094290.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107223.1.S1_s_at	A	A1TS	POPTR_0001s03950	POPTR_0001s03950 (11)	scaffold_1:3143433-3144110(-) (11)	NA	O65351	Subtilisin-like protease	AT4G26330.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os03g06290.1	"OsSub27 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.107240.1.S1_s_at	A	A1TS	POPTR_0009s15190	POPTR_0009s15190 (11)	scaffold_9:11783631-11784010(-) (11)	NA	Q9FNI7	Glucomannan 4-beta-mannosyltransferase 2	AT5G22740.1	cellulose synthase-like A02 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr4g073490.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107249.1.S1_at	A	A1TS	POPTR_0005s13780	POPTR_0005s13780 (11)	scaffold_5:10780160-10780482(+) (11)	NA	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.1	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.107249.1.S1_s_at	A	A1TS	POPTR_0005s13780	POPTR_0005s13780 (11)	scaffold_5:10780233-10780456(+) (11)	NA	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.1	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.107256.1.S1_s_at	A	A1TS	POPTR_0009s13480	POPTR_0009s13480 (11)	scaffold_9:10717174-10717526(+) (11)	NA	Q9FSG7	Thaumatin-like protein 1a	AT4G38670.3	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107257.1.S1_at	A	A1TS	POPTR_0002s07610	POPTR_0002s07610 (11)	scaffold_2:5202563-5204710(+) (11)	NA	Q68FJ8	TOM1-like protein 2	AT1G21380.1	Target of Myb protein 1 	LOC_Os11g09329.1	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.107280.1.S1_at	A	A1TS	POPTR_0018s13240	POPTR_0018s13240 (10)	scaffold_18:13639594-13640621(+) (10)	NA	O04196	"Isoamylase 1, chloroplastic"	AT2G39930.1	isoamylase 1 	LOC_Os08g40930.1	"Alpha amylase, catalytic domain containing protein, expressed"	Medtr4g160980.1	"Alpha amylase, catalytic region; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.10729.1.A1_at	A	A1TS	POPTR_0082s00230	POPTR_0082s00230 (11)	scaffold_8:16658432-16658759(+) (11)//scaffold_82:67704-68031(+) (11)	NA	Q94F30	Ubiquitin-like-specific protease ESD4	AT4G15880.1	Cysteine proteinases superfamily protein 	LOC_Os01g25370.1	"SUMO protease, putative, expressed"	Medtr8g138660.1	"Intermediate filament protein; Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.107313.1.S1_at	A	A1TS	POPTR_0005s20800	POPTR_0005s20800 (11)	scaffold_5:19952609-19953567(+) (11)	NA	O49286	F-box/LRR-repeat protein 5	AT1G77000.2	RNI-like superfamily protein 	LOC_Os05g35110.1	"OsFBL22 - F-box domain and LRR containing protein, expressed"	Medtr7g138390.2	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.10732.1.S1_a_at	A	A1TS	POPTR_0004s03180	POPTR_0004s03180 (11)	scaffold_4:2139150-2140607(+) (11)	NA	Q8LDI5	Thioredoxin-like protein CXXS1	AT1G11530.1	C-terminal cysteine residue is changed to a serine 1 	LOC_Os04g53740.1	"thioredoxin, putative, expressed"	Medtr2g010800.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.10732.1.S1_at	A	A1TS	POPTR_0004s03180	POPTR_0004s03180 (11)	scaffold_4:2138762-2139161(+) (11)	NA	Q8LDI5	Thioredoxin-like protein CXXS1	AT1G11530.1	C-terminal cysteine residue is changed to a serine 1 	LOC_Os04g53740.1	"thioredoxin, putative, expressed"	Medtr2g010800.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.107323.1.S1_s_at	A	A1TS	POPTR_0014s04080	POPTR_0014s04080 (11)	scaffold_14:3254342-3254958(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.107379.1.S1_s_at	A	A1TS	POPTR_0013s14960	POPTR_0013s14960 (11)	scaffold_13:15034874-15034995(-) (11)	NA	Q8S8P5	Probable WRKY transcription factor 33	AT2G38470.1	WRKY DNA-binding protein 33 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g082420.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.10738.1.S1_at	A	A1TS	POPTR_0001s08790	POPTR_0001s08790 (11)	scaffold_1:6715035-6715479(+) (11)	NA	A6QNR1	Ribosomal RNA processing protein 36 homolog	AT1G12650.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). 	LOC_Os09g35670.1	expressed protein	Medtr5g066080.1	Protein of unknown function DUF947 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107388.2.A1_a_at	A	A2TS	POPTR_0008s11590	POPTR_0010s13950 (11)//POPTR_0008s11590 (11)	scaffold_10:13646626-13648124(-) (11)//scaffold_8:7383027-7384269(+) (11)	NA	NA	NA	AT1G25570.1	Di-glucose binding protein with Leucine-rich repeat domain 	LOC_Os01g04720.1	"leucine-rich repeat protein-related, putative, expressed"	Medtr5g069200.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107400.1.S1_at	A	A1TS	POPTR_0001s23420	POPTR_0001s23420 (11)	scaffold_1:22759463-22759921(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G44500.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr3g031560.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107409.1.S1_at	A	A1TS	POPTR_0008s06470	POPTR_0008s06470 (11)	scaffold_8:3847668-3848127(-) (11)	NA	NA	NA	AT2G39950.1	unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). 	LOC_Os07g01060.1	expressed protein	Medtr5g089220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10742.1.S1_at	A	A2TS	POPTR_0001s47040	POPTR_0001s47040 (10)//POPTR_0001s47050 (9)	scaffold_1:47367628-47368115(+) (10)//scaffold_1:47379437-47379905(-) (10)//scaffold_1:47386213-47386681(-) (9)	POPTR_0001s47060 (8)	Q6L545	Gibberellin receptor GID1	AT2G45600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g43430.1	"CXE carboxylesterase, putative, expressed"	Medtr8g150880.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.107428.1.A1_at	A	A1TS	POPTR_0018s14850	POPTR_0018s14850 (11)	scaffold_18:14897697-14897951(+) (11)	NA	Q8N4V2	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os04g51970.2	"synaptic vesicle 2-related protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107428.2.A1_at	A	A1MS	POPTR_0018s14850	POPTR_0018s14850 (9)	scaffold_18:14896763-14896968(+) (9)	NA	Q8N4V2	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os04g51970.2	"synaptic vesicle 2-related protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107428.2.A1_s_at	A	A1TS	POPTR_0018s14850	POPTR_0018s14850 (10)	scaffold_18:14896143-14896594(+) (10)	NA	Q8N4V2	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os04g51970.2	"synaptic vesicle 2-related protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107440.1.A1_at	A	A3TS	POPTR_0010s14320	POPTR_0010s14320 (11)//POPTR_0010s14330 (11)//POPTR_0010s14370 (11)	scaffold_10:13976754-13976800(+) (11)//scaffold_10:13983209-13983255(+) (11)//scaffold_10:14004303-14004349(+) (11)	NA	NA	NA	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os01g16120.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g039970.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107444.1.A1_at	A	A2TS	POPTR_0003s05580	POPTR_0003s05590 (11)//POPTR_0003s05580 (11)	scaffold_3:6968999-6969043(+) (11)//scaffold_3:6976911-6976955(+) (11)	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT3G50280.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g01980.1	"transferase family protein, putative, expressed"	Medtr4g023990.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.107444.1.A1_s_at	A	A3TS	POPTR_0003s05570	POPTR_0003s05570 (11)//POPTR_0003s05590 (11)//POPTR_0003s05580 (11)	scaffold_3:6941763-6942049(+) (11)//scaffold_3:6968881-6969167(+) (11)//scaffold_3:6976793-6977079(+) (11)	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G67150.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g01980.1	"transferase family protein, putative, expressed"	Medtr4g023990.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.107448.1.A1_at	A	A1TS	POPTR_0011s09240	POPTR_0011s09240 (11)	scaffold_11:11437666-11438091(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT1G50660.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). 	LOC_Os04g53350.1	expressed protein	Medtr5g099930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10747.1.S1_at	A	A1TS	POPTR_0018s09870	POPTR_0018s09870 (11)	scaffold_18:10931274-10931316(+) (11)	NA	NA	NA	AT5G57370.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g26349.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g129240.1	"U4/U6.U5 tri-snRNP-associated protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10747.1.S1_s_at	A	A1TS	POPTR_0018s09870	POPTR_0018s09870 (11)	scaffold_18:10928855-10931190(+) (11)	NA	NA	NA	AT5G57370.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g26349.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g129240.1	"U4/U6.U5 tri-snRNP-associated protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10750.1.A1_s_at	A	A1TS	POPTR_0012s05140	POPTR_0012s05140 (11)	scaffold_12:4643545-4645128(+) (11)	NA	O14099	Uncharacterized RING finger protein C2F3.16	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.10751.1.A1_a_at	A	A2TS	POPTR_0004s01030	POPTR_0021s00380 (11)//POPTR_0004s01030 (11)	scaffold_21:115874-116028(-) (11)//scaffold_4:508422-508576(-) (11)	NA	P54260	"Aminomethyltransferase, mitochondrial"	AT1G11860.3	Glycine cleavage T-protein family 	LOC_Os04g53230.1	"aminomethyltransferase, putative, expressed"	Medtr8g147030.1	Glycine cleavage system T protein 	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
PtpAffx.10751.2.A1_at	A	A1TS	POPTR_0004s09210	POPTR_0004s09210 (10)	scaffold_4:7729538-7729681(+) (10)	NA	O14197	Uncharacterized transporter C5D6.04	AT1G71090.1	Auxin efflux carrier family protein 	LOC_Os08g09190.1	"auxin efflux carrier component, putative, expressed"	Medtr5g068420.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.10751.3.S1_at	A	A1TS	POPTR_0005s14850	POPTR_0005s14850 (10)	scaffold_5:11761522-11763441(+) (10)	NA	O14197	Uncharacterized transporter C5D6.04	AT1G71090.1	Auxin efflux carrier family protein 	LOC_Os08g09190.1	"auxin efflux carrier component, putative, expressed"	Medtr5g068420.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.10751.5.S1_a_at	A	A1TS	POPTR_0004s01030	POPTR_0004s01030 (11)	scaffold_4:508243-508392(-) (11)	NA	P54260	"Aminomethyltransferase, mitochondrial"	AT1G11860.3	Glycine cleavage T-protein family 	LOC_Os04g53230.1	"aminomethyltransferase, putative, expressed"	Medtr8g147030.1	Glycine cleavage system T protein 	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
PtpAffx.107566.1.A1_a_at	A	A1TS	POPTR_0001s12410	POPTR_0001s12410 (11)	scaffold_1:9619879-9620169(-) (11)	NA	Q9Y5N5	HemK methyltransferase family member 2	AT3G13440.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g60920.1	"Methyltransferase small domain containing protein, expressed"	Medtr4g025960.1	N-6 Adenine-specific DNA methylase; Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107571.1.A1_s_at	A	A2TS	POPTR_0001s16270	POPTR_0001s16270 (10)//POPTR_0018s12530 (10)	scaffold_1:13080310-13080422(-) (10)//scaffold_1:13088725-13088837(+) (10)//scaffold_18:13093265-13093377(+) (10)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.107579.1.A1_at	A	A1TS	POPTR_0001s46600	POPTR_0001s46600 (11)	scaffold_1:46965441-46965915(+) (11)	POPTR_0001s46620 (8)	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.107587.1.A1_s_at	A	A1TS	POPTR_0014s02550	POPTR_0014s02550 (11)	scaffold_14:2130360-2130405(+) (11)	NA	P42731	Polyadenylate-binding protein 2	AT4G34110.1	poly(A) binding protein 2 	LOC_Os04g42600.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
PtpAffx.10759.1.S1_at	A	A1TS	POPTR_0005s08160	POPTR_0005s08160 (11)	scaffold_5:5609421-5609939(-) (11)	NA	NA	NA	AT4G39700.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g26650.2	"heavy metal-associated domain containing protein, expressed"	Medtr4g140470.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.107590.1.A1_at	A	A1TS	POPTR_0002s13780	POPTR_0002s13780 (10)	scaffold_2:10205930-10207269(-) (11)	NA	Q797A7	Uncharacterized amino acid permease YfnA	AT1G05940.1	cationic amino acid transporter 9 	LOC_Os02g43860.1	"amino acid permease, putative, expressed"	Medtr7g103380.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107592.1.A1_at	A	A1TS	POPTR_0004s13520	POPTR_0004s13520 (11)	scaffold_4:13792030-13792614(-) (11)	NA	NA	NA	AT1G27100.1	Actin cross-linking protein 	LOC_Os03g58740.1	expressed protein	Medtr5g038610.1	Cytosolic fatty-acid binding; Actin-crosslinking proteins 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107621.1.A1_at	A	A1TS	POPTR_0002s14680	POPTR_0002s14680 (11)	scaffold_2:10913326-10913820(-) (11)	NA	P17407	21 kDa protein	AT4G00080.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.107622.1.A1_a_at	A	A1TS	POPTR_0006s10950	POPTR_0006s10950 (11)	scaffold_6:8319953-8320059(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.107622.1.A1_at	A	A1TS	POPTR_0006s10950	POPTR_0006s10950 (11)	scaffold_6:8319974-8320455(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.10764.1.S1_at	A	A1TS	POPTR_0006s09370	POPTR_0006s09370 (11)	scaffold_6:6884432-6884646(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G02010.1	RHO guanyl-nucleotide exchange factor 7 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.107643.1.A1_at	A	A1TS	POPTR_0013s00510	POPTR_0013s00510 (11)	scaffold_13:217462-217793(-) (11)	NA	O65399	"Glucan endo-1,3-beta-glucosidase 1"	AT1G09460.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os03g61780.2	"glucan endo-1,3-beta-glucosidase-related, putative, expressed"	Medtr1g102900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107650.1.A1_at	A	A1TS	POPTR_0010s11610	POPTR_0010s11610 (9)	scaffold_10:11806574-11806874(+) (11)	NA	Q9C9W9	Adagio protein 3	AT1G68050.1	"flavin-binding, kelch repeat, f box 1 "	LOC_Os11g34460.1	"OsFBO10 - F-box and other domain containing protein, expressed"	Medtr4g156890.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107658.1.A1_at	A	A1TS	POPTR_0001s24600	POPTR_0001s24600 (10)	scaffold_1:23858551-23859381(+) (10)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g01060.1	"protein kinase family protein, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.10768.1.S1_at	A	A1TS	POPTR_0012s07530	POPTR_0012s07530 (11)	scaffold_12:8433263-8435108(-) (11)	NA	Q5SY16	Nucleolar protein 9	AT5G11010.3	Pre-mRNA cleavage complex II protein family 	LOC_Os01g08850.1	expressed protein	AC233656_20.1	Pre-mRNA cleavage complex II Clp1; NUC156 AC233656.1 75087-73221 E EGN_Mt090430 200	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	GO:0005525|GTP binding	NA
PtpAffx.107682.1.A1_a_at	A	A1TS	POPTR_0001s21260	POPTR_0001s21260 (11)	scaffold_1:19661287-19661840(+) (11)//scaffold_1942:42-548(+) (10)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.1	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr7g143650.1	"ATPase, E1-E2 type; Heavy metal transport/detoxification protein "	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.107686.1.A1_at	A	A1TS	POPTR_0002s10800	POPTR_0002s10800 (11)	scaffold_2:7839365-7839917(-) (11)	NA	NA	NA	AT1G27595.1	CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). 	LOC_Os01g49940.1	"ESP4, putative, expressed"	Medtr3g127800.1	"T17H3.9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107687.1.S1_s_at	A	A1TS	POPTR_0001s24360	POPTR_0001s24360 (11)	scaffold_1:23661449-23664333(-) (11)	NA	NA	NA	AT5G59960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g05830.1	expressed protein	Medtr4g078590.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107697.1.A1_at	A	A1TS	POPTR_0003s16150	POPTR_0003s16150 (10)	scaffold_3:15762961-15763346(+) (10)	NA	NA	NA	AT2G33550.1	Homeodomain-like superfamily protein 	LOC_Os02g31160.1	"transcription factor, putative"	Medtr7g020740.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.1.S1_a_at	A	A1TS	POPTR_0002s03390	POPTR_0002s03390 (11)	scaffold_2:2103758-2104936(+) (11)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.1.S1_at	A	A1TS	POPTR_0002s03390	POPTR_0002s03390 (10)	scaffold_2:2103789-2104823(+) (10)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.2.S1_at	A	A1TS	POPTR_0005s25220	POPTR_0005s25220 (11)	scaffold_5:23522144-23522184(-) (11)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.2.S1_s_at	A	A1TS	POPTR_0005s25220	POPTR_0005s25220 (11)	scaffold_5:23521907-23522152(-) (11)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.3.S1_at	A	A1MS	POPTR_0002s03390	POPTR_0002s03390 (11)	scaffold_2:2102192-2103245(+) (11)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.5.S1_at	A	A1MS	POPTR_0005s25220	POPTR_0005s25220 (11)	scaffold_5:23524378-23524720(-) (11)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.6.A1_at	A	A1TS	POPTR_0005s25220	POPTR_0005s25220 (9)	scaffold_5:23522971-23523179(-) (9)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107722.1.A1_at	A	A1TS	POPTR_0012s07780	POPTR_0012s07780 (11)	scaffold_12:8689789-8691211(-) (11)	NA	A6TXE3	Ribosomal RNA small subunit methyltransferase G	AT5G50110.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	Medtr8g125150.1	Glucose inhibited division protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008649|rRNA methyltransferase activity	GO:0005737|cytoplasm
PtpAffx.107728.2.A1_a_at	A	A1TS	POPTR_0018s12820	POPTR_0018s12820 (11)	scaffold_18:13343934-13344794(-) (11)	NA	Q99MP8	BRCA1-associated protein	AT2G42160.1	zinc finger (ubiquitin-hydrolase) domain-containing protein 	LOC_Os04g55480.2	"BRCA1-associated protein, putative, expressed"	Medtr8g121030.1	"Zinc finger, UBP-type; Zinc finger, RING-type; BRCA1-associated 2 "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.107729.1.A1_at	A	A1MA	POPTR_0007s14900	POPTR_0007s14900 (10)	scaffold_7:14597129-14597687(-) (10)	NA	A4XP61	Amino-acid acetyltransferase	AT4G37670.2	N-acetyl-l-glutamate synthase 2 	LOC_Os03g31690.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g015470.1	Amino-acid N-acetyltransferase (ArgA) 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.10774.1.S1_at	A	A1TS	POPTR_0002s16690	POPTR_0002s16690 (11)	scaffold_2:12475844-12476767(+) (11)	NA	O82352	Reticulon-like protein B5	AT2G46170.1	Reticulon family protein 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.107745.1.A1_at	A	A1TS	POPTR_0003s16080	POPTR_0003s16080 (10)	scaffold_3:15692426-15692736(+) (10)	NA	Q8VYZ0	E3 ubiquitin-protein ligase ORTHRUS 2	AT1G57820.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01230.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g159770.1	"Zinc finger, RING-type; SRA-YDG; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107746.1.A1_at	A	A1TS	POPTR_0004s09790	POPTR_0004s09790 (10)	scaffold_4:8289234-8289736(-) (10)	NA	NA	NA	AT1G67050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). 	NA	NA	Medtr7g093370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107764.1.A1_at	A	A1TS	POPTR_0003s02620	POPTR_0003s02620 (10)	scaffold_3:2713720-2713913(-) (10)	NA	B7KEJ8	Chaperone protein dnaJ	AT1G80030.2	Molecular chaperone Hsp40/DnaJ family protein 	LOC_Os02g56040.1	"chaperone protein dnaJ, putative, expressed"	Medtr2g126720.1	Chaperone DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.107781.1.A1_at	A	A1TS	POPTR_0002s11210	POPTR_0002s11210 (11)	scaffold_2:8279295-8279771(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107787.1.A1_at	A	A1TS	POPTR_0005s06050	POPTR_0005s06050 (9)	scaffold_5:3974573-3975020(-) (9)	NA	Q9FMJ0	Phosphatidylinositol 4-kinase beta 1	AT5G64070.1	phosphatidylinositol 4-OH kinase beta1 	LOC_Os11g10420.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g142660.1	"Phosphatidylinositol 3- and 4-kinase, catalytic "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.107803.1.A1_at	A	A1TS	POPTR_0002s21000	POPTR_0002s21000 (11)	scaffold_2:17318459-17319112(-) (11)	NA	NA	NA	AT3G62900.1	CW-type Zinc Finger 	LOC_Os03g22580.2	"CW-type Zinc Finger, putative, expressed"	Medtr7g130050.1	"Zinc finger, CW-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.107813.1.A1_at	A	A1TS	POPTR_0006s06980	POPTR_0006s06980 (11)	scaffold_6:5024558-5025680(-) (11)	NA	O58107	Probable galactokinase	AT3G10700.1	galacturonic acid kinase 	LOC_Os04g51880.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr4g160950.1	Mevalonate and galactokinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.107813.1.A1_s_at	A	A1TS	POPTR_0006s06980	POPTR_0006s06980 (11)	scaffold_6:5024831-5025543(-) (11)	NA	O58107	Probable galactokinase	AT3G10700.1	galacturonic acid kinase 	LOC_Os04g51880.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr4g160950.1	Mevalonate and galactokinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.107814.1.A1_at	A	A1TS	POPTR_0007s10460	POPTR_0007s10460 (11)	scaffold_7:10417446-10417721(+) (11)	NA	Q6C9M9	Chromatin modification-related protein EAF3	AT4G37280.1	MRG family protein 	LOC_Os04g01130.1	"chromatin modification-related protein EAF3, putative, expressed"	NA	NA	NA	NA	GO:0005634|nucleus
PtpAffx.107820.1.S1_at	A	A1TS	POPTR_0001s25340	POPTR_0001s25340 (11)	scaffold_1:24503359-24503854(+) (11)	NA	NA	NA	AT5G59020.1	Protein of unknown function (DUF3527) 	LOC_Os03g16070.3	expressed protein	Medtr2g117390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107845.1.A1_at	A	A1TS	POPTR_0003s21530	POPTR_0003s21530 (11)	scaffold_3:19657917-19657965(+) (11)	NA	Q6QNM1	Casein kinase I	AT3G13670.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g005760.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.107855.1.A1_a_at	A	A1TS	POPTR_0001s25530	POPTR_0001s25530 (11)	scaffold_1:24609294-24609360(-) (11)	NA	Q66GI9	"Probable anion transporter 4, chloroplastic"	AT3G46980.3	phosphate transporter 4;3 	LOC_Os01g63290.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107855.1.A1_at	A	A1TS	POPTR_0001s25530	POPTR_0001s25530 (11)	scaffold_1:24609015-24609858(-) (11)	NA	Q66GI9	"Probable anion transporter 4, chloroplastic"	AT3G46980.3	phosphate transporter 4;3 	LOC_Os01g63290.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107857.1.A1_s_at	A	A1TS	POPTR_0001s28440	POPTR_0001s28440 (11)	scaffold_1:27223134-27223223(-) (11)	NA	O80873	Uncharacterized protein At1g07170/At2g30000	AT2G30000.1	PHF5-like protein 	LOC_Os05g30410.1	"PHF5-like protein domain containing protein, expressed"	Medtr4g024080.1	Protein of unknown function UPF0123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107865.1.S1_at	A	A1TS	POPTR_0002s12500	POPTR_0002s12500 (9)	scaffold_2:9279400-9280732(-) (11)	NA	O95239	Chromosome-associated kinesin KIF4A	AT5G47820.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g147320.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.107876.1.A1_at	A	A1TS	POPTR_0004s11910	POPTR_0004s11910 (11)	scaffold_4:10757595-10759077(-) (11)	NA	NA	NA	AT5G39220.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41080.1	"hydrolase, alpha/beta fold family domain containing protein"	Medtr5g047260.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107881.1.A1_at	A	A1TS	POPTR_0006s12960	POPTR_0006s12960 (10)	scaffold_6:10218508-10221227(-) (10)	NA	NA	NA	AT2G37195.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g56190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107905.1.S1_at	A	A1TS	POPTR_0004s21680	POPTR_0004s21680 (11)	scaffold_4:20734463-20734883(+) (11)	NA	A4SGN0	Homoserine kinase	AT2G17265.1	homoserine kinase 	LOC_Os02g58510.1	"GHMP kinases ATP-binding protein, putative"	Medtr5g106780.1	Homoserine kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.107905.2.A1_at	A	A1TS	POPTR_0009s16960	POPTR_0009s16960 (11)	scaffold_9:12791295-12791818(-) (11)	NA	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os02g13560.4	"transporter family protein, putative, expressed"	Medtr3g164110.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.107925.1.A1_at	A	A1TS	POPTR_0002s04680	POPTR_0002s04680 (10)	scaffold_2:2921205-2921524(-) (10)	NA	Q96PP9	Guanylate-binding protein 4	AT2G38840.1	Guanylate-binding family protein 	LOC_Os03g58240.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.107951.1.A1_at	A	A1TS	POPTR_0015s02200	POPTR_0015s02200 (11)	scaffold_15:1524727-1525074(-) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.107951.1.A1_s_at	A	A1TS	POPTR_0015s02200	POPTR_0015s02200 (11)	scaffold_15:1524791-1525627(-) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.107976.1.A1_a_at	A	A1TS	POPTR_0016s08430	POPTR_0016s08430 (11)	scaffold_16:6243532-6244468(+) (11)	NA	Q8H8U5	Protein IN2-1 homolog B	AT5G02790.1	Glutathione S-transferase family protein 	LOC_Os03g17470.1	"IN2-1 protein, putative, expressed"	AC235022_17.1	Thioredoxin fold; Thioredoxin-like fold AC235022.1 105935-107691 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107979.1.A1_s_at	A	A1TS	POPTR_0016s12870	POPTR_0016s12870 (11)	scaffold_16:12220496-12221063(+) (11)	NA	Q08C72	Pre-mRNA-splicing factor CWC22 homolog	AT1G80930.1	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os12g15420.1	"nucampholin, putative, expressed"	Medtr7g112210.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.107983.1.A1_at	A	A1MS	POPTR_0016s03220	POPTR_0016s03220 (11)	scaffold_16:1641674-1642058(-) (11)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.107986.1.A1_at	A	A1TS	POPTR_0002s05580	POPTR_0002s05580 (10)	scaffold_2:3651205-3651439(-) (10)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107986.1.A1_s_at	A	A1TS	POPTR_0002s05580	POPTR_0002s05580 (11)	scaffold_2:3651448-3651757(-) (11)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10799.1.S1_at	A	A1TS	POPTR_0010s01860	POPTR_0010s01860 (10)	scaffold_10:2043187-2044504(+) (11)//scaffold_10:2061311-2062061(+) (9)	NA	Q767L8	Mediator of DNA damage checkpoint protein 1	AT3G21480.1	BRCT domain-containing DNA repair protein 	LOC_Os05g05440.1	expressed protein	Medtr2g025520.1	BRCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107994.1.A1_at	A	A1MS	POPTR_0017s06170	POPTR_0017s06170 (11)	scaffold_17:4775828-4776129(+) (11)	NA	P41252	"Isoleucyl-tRNA synthetase, cytoplasmic"	AT4G10320.1	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os06g43760.1	"tRNA synthetase class I, putative, expressed"	Medtr4g104390.1	"Aminoacyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.108003.1.S1_at	A	A1TS	POPTR_0018s02330	POPTR_0018s02330 (11)	scaffold_18:2084175-2084253(+) (11)	NA	P62598	Two-component response regulator ARR12	AT2G25180.1	response regulator 12 	LOC_Os02g08500.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.108003.1.S1_s_at	A	A1TS	POPTR_0018s02330	POPTR_0018s02330 (11)	scaffold_18:2084360-2085857(+) (11)	POPTR_0006s27800 (6)	P62598	Two-component response regulator ARR12	AT2G25180.1	response regulator 12 	LOC_Os02g08500.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.108016.1.A1_at	A	A1TS	POPTR_0006s17740	POPTR_0006s17740 (11)	scaffold_6:15916921-15917278(+) (11)	NA	Q3ECB8	Pentatricopeptide repeat-containing protein At1g77170	AT1G77170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g42610.1	"pentatricopeptide, putative, expressed"	Medtr4g159620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108018.1.A1_at	A	A1MS	POPTR_0008s16000	POPTR_0008s16000 (9)	scaffold_8:10679098-10679286(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108020.1.A1_at	A	A1MS	POPTR_0007s03970	POPTR_0007s03970 (10)	scaffold_7:2371503-2373244(-) (10)	NA	Q9LIH5	Zinc finger CCCH domain-containing protein 38	AT3G18640.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os08g04170.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr3g143650.2	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.10803.1.S1_at	A	A1TS	POPTR_0004s17810	POPTR_0004s17810 (11)	scaffold_4:17845507-17845700(+) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022110.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.108034.1.A1_at	A	A1TA	POPTR_0004s03010	POPTR_0004s03010 (11)	scaffold_4:2029853-2030231(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108043.1.A1_at	A	A1TS	POPTR_0006s02290	POPTR_0006s02290 (11)	scaffold_6:1508509-1508818(-) (11)	NA	Q7ZUW2	Hypoxia up-regulated protein 1	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g48110.1	"DnaK family protein, putative, expressed"	Medtr3g068340.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108048.1.A1_at	A	A1TS	POPTR_0005s25730	POPTR_0005s25730 (11)	scaffold_5:23933525-23933632(+) (11)	NA	Q52KW8	Protein RCC2 homolog	AT1G19880.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g56720.1	"RCC2, putative, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108056.1.A1_at	A	A1TA	POPTR_0010s11350	POPTR_0010s11350 (11)	scaffold_10:11657042-11657363(-) (11)	NA	Q9C5U0	Histidine kinase 4	AT2G01830.1	CHASE domain containing histidine kinase protein 	LOC_Os03g50860.1	"histidine kinase, putative, expressed"	Medtr4g156220.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.108059.1.A1_at	A	A1TS	POPTR_0008s16920	POPTR_0008s16920 (11)	scaffold_8:11368487-11370635(+) (11)	NA	B5WWZ8	Long-chain-alcohol oxidase FAO1	AT3G23410.1	fatty alcohol oxidase 3 	LOC_Os02g40840.1	"alcohol oxidase, putative, expressed"	Medtr1g090220.1	Glucose-methanol-choline oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.108063.1.A1_at	A	A1TS	POPTR_0001s13180	POPTR_0001s13180 (11)	scaffold_1:10257574-10257909(-) (11)	NA	Q8LL04	RNA polymerase II C-terminal domain phosphatase-like 3	AT2G33540.1	C-terminal domain phosphatase-like 3 	LOC_Os11g31890.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr7g020970.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.108065.1.A1_at	A	A1MS	POPTR_0013s12680	POPTR_0013s12680 (11)	scaffold_13:13386951-13387123(+) (11)	NA	Q9P7W0	OPA3-like protein	AT1G28510.1	Optic atrophy 3 protein (OPA3) 	LOC_Os02g20844.1	expressed protein	Medtr2g018330.1	Optic atrophy 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108074.1.A1_at	A	A2TS	POPTR_0010s11720	POPTR_0010s11720 (11)//POPTR_0010s11730 (11)	scaffold_10:11896561-11897162(-) (11)//scaffold_10:11907772-11908749(-) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os08g42840.1	"leucine rich repeat protein, putative, expressed"	Medtr2g021180.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.108080.1.A1_at	A	A1MS	POPTR_0019s10160	POPTR_0019s10160 (11)	scaffold_19:11741540-11742499(-) (11)	NA	Q69ZF3	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.108099.1.A1_at	A	A1TS	POPTR_0013s12360	POPTR_0013s12360 (11)	scaffold_13:12977492-12977788(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108104.1.A1_at	A	A1TS	POPTR_0001s46210	POPTR_0001s46210 (11)	scaffold_1:46644816-46646588(+) (11)	NA	P37518	GTP-dependent nucleic acid-binding protein engD	AT1G56050.1	GTP-binding protein-related 	LOC_Os03g56840.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.108105.1.A1_at	A	A1TS	POPTR_0015s04160	POPTR_0015s04160 (9)	scaffold_15:4190262-4190471(+) (9)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT1G48650.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.108108.1.A1_at	A	A1MS	POPTR_0007s14800	POPTR_0007s14800 (9)	scaffold_7:14531898-14532376(+) (9)	NA	O81004	GTP-binding protein At2g22870	AT2G22870.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g13000.2	"GTP-binding protein, putative, expressed"	Medtr3g132650.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.108119.1.A1_at	A	A1MS	POPTR_0003s16860	POPTR_0003s16860 (11)	scaffold_3:16375526-16375765(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108132.1.A1_at	A	A1TS	POPTR_0006s16160	POPTR_0006s16160 (11)	scaffold_6:14089624-14090125(-) (11)	NA	NA	NA	AT1G69430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 216 Blast hits to 215 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g40470.1	expressed protein	Medtr4g115820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108153.1.A1_at	A	A1TS	POPTR_0002s13210	POPTR_0002s13210 (11)	scaffold_2:9840995-9841092(+) (11)	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1082.1.S1_at	A	A1TS	POPTR_0017s04870	POPTR_0017s04870 (11)	scaffold_17:3747668-3747834(-) (11)	NA	Q54Q31	Prohibitin-2	AT2G20530.2	prohibitin 6 	LOC_Os03g62490.1	"prohibitin-2, putative, expressed"	Medtr4g107930.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1082.2.S1_s_at	A	A1TS	POPTR_0001s41100	POPTR_0001s41100 (11)	scaffold_1:40758617-40758810(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10820.2.S1_a_at	A	A1TS	POPTR_0018s09190	POPTR_0018s09190 (11)	scaffold_18:10075756-10076200(+) (11)	NA	Q9SL76	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein	AT2G20050.1	protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases 	LOC_Os02g17970.1	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g140110.1	Protein phosphatase 2C; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.108239.1.A1_s_at	A	A1TS	POPTR_0011s14860	POPTR_0011s14860 (11)	scaffold_11:17121076-17121681(+) (11)	NA	NA	NA	AT1G76520.2	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	CU179634_11.1	Auxin Efflux Carrier CU179634.6 45127-49222 H EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.108253.1.A1_s_at	A	A1TS	POPTR_0004s00350	POPTR_0004s00350 (11)	scaffold_4:99027-99475(+) (11)	NA	NA	NA	AT1G12020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os11g29810.1	conserved hypothetical protein	Medtr2g029450.1	"protein F12F1.11 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108273.1.A1_at	A	A1TS	POPTR_0005s09920	POPTR_0005s09920 (11)	scaffold_5:7012104-7012413(+) (11)	NA	NA	NA	AT3G12830.1	SAUR-like auxin-responsive protein family  	LOC_Os03g45800.1	OsSAUR14 - Auxin-responsive SAUR gene family member	Medtr3g133040.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108288.1.A1_a_at	A	A1TS	POPTR_0016s02300	POPTR_0016s02300 (11)	scaffold_16:1115031-1115079(-) (11)//scaffold_16:1115080-1115128(-) (11)	NA	A2CES0	Neuferricin	AT4G14965.1	membrane-associated progesterone binding protein 4 	LOC_Os03g10790.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g138500.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.108288.1.A1_at	A	A1TS	POPTR_0016s02300	POPTR_0016s02300 (11)	scaffold_16:1114953-1116172(-) (11)	NA	A2CES0	Neuferricin	AT4G14965.1	membrane-associated progesterone binding protein 4 	LOC_Os03g10790.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g138500.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.108289.1.A1_s_at	A	A2TS	POPTR_0008s04670	POPTR_0008s04670 (11)//POPTR_0010s22180 (11)	scaffold_10:19179797-19180520(+) (11)//scaffold_8:2675234-2676140(-) (11)	NA	Q9LHJ9	Probable protein phosphatase 2C 38	AT3G12620.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr1g146560.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108293.1.A1_at	A	A1MS	POPTR_0004s10440	POPTR_0004s10440 (9)	scaffold_4:8993401-8993738(-) (9)	NA	Q8K4H1	Probable arylformamidase	AT5G15860.1	prenylcysteine methylesterase 	LOC_Os05g50170.2	"ATPCME, putative, expressed"	AC233657_30.1	"Carboxylesterase, type B AC233657.1 159050-155204 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108294.1.A1_at	A	A1TS	POPTR_0003s22090	POPTR_0003s22090 (11)	scaffold_3:20032081-20032653(+) (11)	NA	O23116	ETHYLENE INSENSITIVE 3-like 3 protein	AT1G73730.1	ETHYLENE-INSENSITIVE3-like 3 	LOC_Os09g31400.1	"ethylene-insensitive 3, putative, expressed"	Medtr2g118010.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.108296.1.A1_at	A	A1TS	POPTR_0009s02410	POPTR_0009s02410 (11)	scaffold_9:3165665-3166389(-) (11)	NA	Q9FMR5	Vesicle-associated membrane protein 714	AT5G22360.1	vesicle-associated membrane protein 714 	LOC_Os10g06540.1	"vesicle-associated membrane protein, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.108310.1.A1_at	A	A1TS	POPTR_0008s07600	POPTR_0008s07600 (11)	scaffold_8:4657664-4657799(+) (11)	NA	Q93V61	Phospholipase A(1) LCAT3	AT3G03310.1	lecithin:cholesterol acyltransferase 3 	LOC_Os09g33820.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr7g090070.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108310.1.A1_s_at	A	A1TS	POPTR_0008s07600	POPTR_0008s07600 (11)	scaffold_8:4656533-4657627(+) (11)	NA	Q93V61	Phospholipase A(1) LCAT3	AT3G03310.1	lecithin:cholesterol acyltransferase 3 	LOC_Os09g33820.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr7g090070.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108312.1.A1_s_at	A	A1TS	POPTR_0003s17840	POPTR_0003s17840 (11)	scaffold_3:17101661-17102422(-) (11)	NA	Q38942	Rae1-like protein At1g80670	AT1G80670.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g07960.2	"mitotic checkpoint protein, putative, expressed"	Medtr2g008550.1	"Peptidase, cysteine peptidase active site; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108315.1.A1_at	A	A1TS	POPTR_0003s11410	POPTR_0003s11410 (11)	scaffold_3:12228585-12229400(+) (11)	NA	O81312	UDP-glucuronate 4-epimerase 3	AT4G00110.1	UDP-D-glucuronate 4-epimerase 3 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr4g025510.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.108318.1.A1_at	A	A1MS	POPTR_0006s14520	POPTR_0006s14520 (11)	scaffold_6:11864376-11864925(-) (11)	NA	Q9FEW9	12-oxophytodienoate reductase 3	AT2G06050.3	oxophytodienoate-reductase 3 	LOC_Os08g35740.2	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006840.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.108328.1.A1_a_at	A	A1TS	POPTR_0016s10180	POPTR_0016s10180 (10)	scaffold_16:8331931-8332400(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g070900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10834.1.A1_at	A	A1TS	POPTR_0017s13090	POPTR_0017s13090 (9)	scaffold_17:13263040-13264035(+) (9)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os11g41150.1	"nitrilase-associated protein, putative, expressed"	Medtr7g025650.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108350.1.A1_at	A	A1TS	POPTR_0016s08010	POPTR_0016s08010 (11)	scaffold_16:5814411-5814694(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT3G52660.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g127590.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.108353.1.A1_at	A	A1TS	POPTR_0005s23880	POPTR_0005s23880 (11)	scaffold_5:22600009-22600366(+) (11)	NA	Q96PP9	Guanylate-binding protein 4	AT2G38840.1	Guanylate-binding family protein 	LOC_Os03g58240.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.108357.1.A1_at	A	A1TS	POPTR_0018s14680	POPTR_0018s14680 (11)	scaffold_18:14803521-14804767(-) (11)	NA	Q5Z818	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.108360.1.A1_at	A	A1TS	POPTR_0006s28380	POPTR_0006s28380 (11)	scaffold_6:26080547-26082054(+) (11)	NA	Q9FVR6	"Uncharacterized protein At1g32220, chloroplastic"	AT5G10730.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g35039.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138720.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.108366.1.A1_at	A	A1TS	POPTR_0004s15520	POPTR_0004s15520 (11)	scaffold_4:16134499-16136987(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108379.1.A1_at	A	A1TS	POPTR_0011s00840	POPTR_0011s00840 (11)	scaffold_11:423852-424630(-) (11)	NA	Q9H223	EH domain-containing protein 4	AT4G05520.1	EPS15 homology domain 2 	LOC_Os06g47330.1	"dynamin family protein, putative, expressed"	Medtr2g029240.1	"EPS15 homology (EH); Dynamin; Actin-binding, actinin-type "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.108380.2.A1_a_at	A	A1TS	POPTR_0001s39240	POPTR_0001s39240 (11)	scaffold_1:38453687-38453947(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g14940.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.108387.1.A1_at	A	A1MS	POPTR_0002s03900	POPTR_0002s03900 (11)	scaffold_2:2447642-2448197(-) (11)	NA	NA	NA	AT1G06200.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os04g01240.1	"serine-type peptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10840.1.S1_at	A	A1TS	POPTR_0018s04240	POPTR_0018s04240 (11)	scaffold_18:3558536-3559088(+) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10840.1.S1_s_at	A	A1TS	POPTR_0018s04240	POPTR_0018s04240 (11)	scaffold_18:3559106-3559475(+) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10840.2.A1_a_at	A	A1TS	POPTR_0018s04240	POPTR_0018s04240 (11)	scaffold_18:3558234-3558427(+) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10843.1.A1_at	A	A1MS	POPTR_0008s11930	POPTR_0008s11930 (11)	scaffold_8:7686264-7686752(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.10843.2.A1_s_at	A	A1TS	POPTR_0010s13490	POPTR_0010s13490 (11)	scaffold_10:13308196-13309204(-) (11)	NA	Q8RWD0	Zinc finger protein CONSTANS-LIKE 16	AT1G25440.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g15330.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr4g158260.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.108432.1.A1_at	A	A1TS	POPTR_0001s25830	POPTR_0001s25830 (11)	scaffold_1:24908852-24909683(-) (11)	NA	Q39253	Vacuolar cation/proton exchanger 1	AT2G38170.1	cation exchanger 1 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr5g078800.1	Calcium/proton exchanger superfamily 	NA	NA	GO:0016021|integral to membrane
PtpAffx.108442.1.A1_at	A	A1TS	POPTR_0005s26000	POPTR_0005s26000 (11)	scaffold_5:24159477-24159934(-) (11)	NA	NA	NA	AT1G75730.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages. 	NA	NA	Medtr3g156340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108447.1.A1_at	A	A1TS	POPTR_0010s16820	POPTR_0010s16820 (11)	scaffold_10:15667499-15667865(+) (11)	NA	Q8L608	Heparanase-like protein 2	AT5G61250.1	glucuronidase 1 	LOC_Os07g40740.1	"heparanase-like protein precursor, putative, expressed"	Medtr5g046570.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.108454.1.A1_a_at	A	A1TS	POPTR_0010s06330	POPTR_0010s06330 (11)	scaffold_10:7729405-7731562(+) (11)	NA	O64511	Protein TWIN LOV 1	AT2G02710.2	PAS/LOV protein B 	LOC_Os01g09120.1	"Twin LOV 1, putative, expressed"	Medtr5g039450.1	PAS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	NA
PtpAffx.108460.1.A1_at	A	A1TS	POPTR_0001s30520	POPTR_0001s30520 (11)	scaffold_1:28996753-28997378(+) (11)	NA	O64628	Thioredoxin domain-containing protein 9 homolog	AT2G18990.1	thioredoxin domain-containing protein 9 homolog 	LOC_Os08g15204.1	"thioredoxin domain-containing protein 9, putative, expressed"	Medtr8g092810.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108468.1.A1_at	A	A1TS	POPTR_0004s21510	POPTR_0004s21510 (11)	scaffold_4:20611531-20611826(+) (11)	NA	NA	NA	AT4G38280.1	BEST Arabidopsis thaliana protein match is: Integral membrane protein hemolysin-III homolog (TAIR:AT2G45250.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g37700.1	"proteophosphoglycan ppg4, putative, expressed"	Medtr3g164060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108488.1.A1_at	A	A1TS	POPTR_0018s09060	POPTR_0018s09060 (11)	scaffold_18:9940692-9940767(-) (11)	NA	Q8S3D1	Transcription factor bHLH68	AT4G29100.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g14010.1	"ethylene-responsive protein related, putative, expressed"	AC233783_18.2	Helix-loop-helix DNA-binding AC233783.1 82495-77637 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108493.1.A1_at	A	A1TS	POPTR_0001s47440	POPTR_0001s47440 (11)	scaffold_1:47639749-47640047(-) (11)	POPTR_0011s17070 (6)	Q5SSW2	Proteasome activator complex subunit 4	AT3G13330.1	proteasome activating protein 200 	LOC_Os06g19730.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108502.1.A1_a_at	A	A2TS	POPTR_0012s07940	POPTR_0015s08460 (11)//POPTR_0012s07940 (11)	scaffold_12:8934085-8934198(+) (11)//scaffold_15:9729992-9730135(+) (11)	NA	Q7X843	RING-H2 finger protein ATL48	AT3G48030.1	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os09g20900.1	"hypoxia-responsive family protein, putative, expressed"	Medtr8g125330.1	Hypoxia induced protein conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108502.2.S1_at	A	A1TS	POPTR_0015s08460	POPTR_0015s08460 (11)	scaffold_15:9729901-9730230(+) (11)	NA	Q7X843	RING-H2 finger protein ATL48	AT3G48030.1	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os09g20900.1	"hypoxia-responsive family protein, putative, expressed"	Medtr8g125330.1	Hypoxia induced protein conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108506.1.A1_at	A	A1TS	POPTR_0004s01070	POPTR_0004s01070 (11)	scaffold_4:535796-536538(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT4G22010.1	SKU5  similar 4 	LOC_Os06g46500.1	"monocopper oxidase, putative, expressed"	Medtr8g147000.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.108513.1.A1_s_at	A	A1TS	POPTR_0015s01510	POPTR_0015s01510 (11)	scaffold_15:933786-934296(+) (11)	NA	Q7LBC6	Lysine-specific demethylase 3B	AT4G00990.1	Transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os03g31594.1	"jmjC domain containing protein, expressed"	Medtr1g009190.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, RING-type; Transcription factor jumonji, jmjC; "	NA	GO:0003677|DNA binding	NA
PtpAffx.108514.1.A1_at	A	A1TS	POPTR_0018s00510	POPTR_0018s00510 (11)	scaffold_18:452618-452756(-) (11)	NA	Q94FY7	"Tocopherol cyclase, chloroplastic"	AT4G32770.1	"tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) "	LOC_Os02g17650.1	"tocopherol cyclase, chloroplast precursor, putative, expressed"	AC225517_3.1	"Tocopherol cyclase, chloroplast precursor, putative AC225517.6 12507-17093 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108517.1.A1_at	A	A1TS	POPTR_0018s05390	POPTR_0018s05390 (11)	scaffold_18:4931427-4931913(+) (11)	NA	O94673	Uncharacterized membrane protein C776.05	AT5G35460.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g40280.1	"integral membrane protein, putative, expressed"	Medtr2g046410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108518.1.A1_at	A	A1TS	POPTR_0001s21680	POPTR_0001s21680 (10)	scaffold_1:20227445-20228045(-) (10)	NA	Q8BJ56	Patatin-like phospholipase domain-containing protein 2	AT1G33270.1	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 	LOC_Os11g34370.1	"phospholipase, patatin family, putative, expressed"	Medtr2g007800.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.10854.1.S1_s_at	A	A1TS	POPTR_0001s33990	POPTR_0001s33990 (11)	scaffold_1:32138443-32138869(-) (11)	NA	Q9LK32	Uncharacterized protein At3g27210	AT3G01860.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g69100.1	expressed protein	Medtr6g025370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108545.1.S1_s_at	A	A2TS	POPTR_0001s32370	POPTR_0017s08380 (11)//POPTR_0001s32370 (11)	scaffold_1:30726695-30727733(+) (11)//scaffold_17:6894195-6894793(+) (11)	NA	Q6GL77	UBX domain-containing protein 1	AT1G04850.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os02g30180.1	"ZOS2-07 - C2H2 zinc finger protein, expressed"	Medtr4g133680.1	"Ubiquitin-associated; PUG; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108572.1.A1_s_at	A	A1TS	POPTR_0006s27060	POPTR_0006s27060 (11)	scaffold_6:25081583-25082973(-) (11)	NA	Q8GY91	Putative L-ascorbate peroxidase 6	AT4G32320.1	ascorbate peroxidase 6 	LOC_Os08g41090.1	"peroxidase precursor, putative, expressed"	Medtr3g137110.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.108576.1.A1_at	A	A1MS	POPTR_0003s07370	POPTR_0003s07370 (11)	scaffold_3:8925352-8925396(-) (11)	NA	Q9SHC8	Vesicle-associated protein 1-2	AT2G45140.1	plant VAP homolog 12 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr5g012520.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.108576.1.A1_s_at	A	A1TS	POPTR_0003s07370	POPTR_0003s07370 (11)	scaffold_3:8924974-8925310(-) (11)	NA	Q9SHC8	Vesicle-associated protein 1-2	AT2G45140.1	plant VAP homolog 12 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr5g012520.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.10859.1.A1_at	A	A1TS	POPTR_0004s10280	POPTR_0004s10280 (10)	scaffold_4:8819094-8819534(+) (11)	NA	NA	NA	AT1G67265.1	ROTUNDIFOLIA like 21 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108598.1.A1_at	A	A1TS	POPTR_0011s02470	POPTR_0011s02470 (11)	scaffold_11:2361737-2362136(-) (11)	NA	Q55B11	Vacuolar protein sorting-associated protein VTA1 homolog	AT4G26750.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os06g20390.1	expressed protein	Medtr5g101280.1	Protein of unknown function DUF605 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10860.1.S1_at	A	A1TS	POPTR_0006s08150	POPTR_0006s08150 (9)	scaffold_6:5920350-5921043(-) (9)	NA	Q0JAA0	Probable protein phosphatase 2C 44	AT4G28400.1	Protein phosphatase 2C family protein 	LOC_Os04g52000.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108603.1.A1_s_at	A	A1TS	POPTR_0006s08670	POPTR_0006s08670 (11)	scaffold_6:6352540-6352717(+) (11)	NA	Q9LZM1	Oxysterol-binding protein-related protein 3A	AT5G02100.1	Oxysterol-binding family protein 	LOC_Os03g16690.1	"oxysterol-binding protein, putative, expressed"	Medtr4g083830.1	Oxysterol-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108604.1.A1_at	A	A1TS	POPTR_0004s02170	POPTR_0004s02170 (11)	scaffold_4:1342980-1343930(-) (11)	NA	Q9NUW8	Tyrosyl-DNA phosphodiesterase 1	AT5G15170.1	tyrosyl-DNA phosphodiesterase-related 	LOC_Os07g34598.1	"tyrosyl-DNA phosphodiesterase 1, putative, expressed"	Medtr7g047060.1	Tyrosyl-DNA phosphodiesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008081|phosphoric diester hydrolase activity	GO:0005634|nucleus
PtpAffx.108613.1.A1_at	A	A1TS	POPTR_0002s19870	POPTR_0002s19870 (11)	scaffold_2:15811841-15812215(-) (11)	NA	Q9ZSZ8	FKBP12-interacting protein of 37 kDa	AT3G54170.1	FKBP12 interacting protein 37 	LOC_Os06g27970.1	"FKBP12-interacting protein of 37 kDa, putative, expressed"	Medtr3g114510.1	"FKBP12-interacting protein of 37 kDa, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108645.1.A1_at	A	A1TS	POPTR_0005s12700	POPTR_0005s12700 (11)	scaffold_5:9444319-9444410(-) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT4G36690.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.108650.1.A1_at	A	A1MA	POPTR_0002s17080	POPTR_0002s17080 (11)	scaffold_2:12857760-12858112(-) (11)	NA	NA	NA	AT3G61680.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g43140.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.108661.1.A1_at	A	A1TS	POPTR_0016s15020	POPTR_0016s15020 (11)	scaffold_16:14062431-14062770(-) (11)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os12g02820.1	"cytidylyltransferase domain containing protein, expressed"	Medtr7g081050.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.108686.1.A1_at	A	A1TS	POPTR_0014s01630	POPTR_0014s01630 (11)	scaffold_14:1519019-1519644(-) (11)	NA	Q86TV6	Tetratricopeptide repeat protein 7B	AT1G27460.1	no pollen germination related 1 	LOC_Os03g10350.2	"NPGR1, putative, expressed"	Medtr1g023320.1	"Peptidase, cysteine peptidase active site; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108688.1.A1_at	A	A1MA	POPTR_0001s16420	POPTR_0001s16420 (11)	scaffold_1:13224719-13225097(-) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10869.1.S1_at	A	A1TS	POPTR_0002s15520	POPTR_0002s15520 (11)	scaffold_2:11595328-11595750(-) (11)	NA	Q8LG03	F-box protein At4g00755	AT4G00755.2	F-box family protein 	LOC_Os03g02560.1	"cyclin-like F-box, putative, expressed"	Medtr7g083800.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10869.2.S1_a_at	A	A1TS	POPTR_0014s07240	POPTR_0014s07240 (11)	scaffold_14:5474935-5475232(+) (11)	NA	Q8LG03	F-box protein At4g00755	AT4G00755.2	F-box family protein 	LOC_Os03g02560.1	"cyclin-like F-box, putative, expressed"	Medtr7g083800.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10869.3.S1_a_at	A	A1TS	POPTR_0014s07240	POPTR_0014s07240 (11)	scaffold_14:5472043-5472224(+) (11)	NA	Q8LG03	F-box protein At4g00755	AT4G00755.2	F-box family protein 	LOC_Os03g02560.1	"cyclin-like F-box, putative, expressed"	Medtr7g083800.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108694.1.A1_at	A	A1TS	POPTR_0001s01580	POPTR_0001s01580 (11)	scaffold_1:1175702-1175825(-) (11)	NA	Q8IUF1	COBW domain-containing protein 2	AT1G80480.1	plastid transcriptionally active 17 	LOC_Os04g51100.1	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108694.1.A1_s_at	A	A1TS	POPTR_0001s01580	POPTR_0001s01580 (11)	scaffold_1:1175818-1177437(-) (11)	NA	Q8IUF1	COBW domain-containing protein 2	AT1G80480.1	plastid transcriptionally active 17 	LOC_Os04g51100.1	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108711.1.A1_at	A	A1TS	POPTR_0006s02720	POPTR_0006s02720 (11)	scaffold_6:1731385-1731528(+) (11)	NA	NA	NA	AT3G56820.1	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os01g59520.3	"cupin, RmlC-type, putative, expressed"	Medtr7g104810.1	"Cupin, RmlC-type, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108714.1.A1_at	A	A1TS	POPTR_0010s15020	POPTR_0010s15020 (11)	scaffold_10:14425916-14426575(+) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G38895.3	RING/U-box superfamily protein 	LOC_Os11g41140.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108741.1.A1_at	A	A1TS	POPTR_0012s08300	POPTR_0012s08300 (11)	scaffold_12:9368183-9368699(-) (11)	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT3G48190.1	ataxia-telangiectasia mutated 	LOC_Os05g38810.1	"PWWP domain containing protein, expressed"	Medtr6g005730.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108748.1.A1_a_at	A	A1TS	POPTR_0002s00610	POPTR_0002s00610 (11)	scaffold_2:270311-270738(+) (11)	NA	Q9I8B3	RNA-binding protein 24-B	AT1G76460.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g48340.2	"RNA recognition motif containing protein, putative, expressed"	Medtr3g159840.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.108766.1.A1_at	A	A1MS	POPTR_0004s00790	POPTR_0004s00790 (10)	scaffold_4:359263-361242(-) (11)	NA	NA	NA	AT2G32580.1	Protein of unknown function (DUF1068) 	LOC_Os03g56610.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108774.1.A1_at	A	A1TA	POPTR_0002s01230	POPTR_0002s01230 (11)	scaffold_2:649703-650254(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G76270.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr5g106640.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10878.1.S1_at	A	A1TS	POPTR_0007s03020	POPTR_0007s03020 (11)	scaffold_7:1755674-1756000(+) (11)	NA	NA	NA	AT1G31817.1	Ribosomal L18p/L5e family protein 	LOC_Os03g26860.1	"ribosomal protein, putative, expressed"	Medtr2g125760.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10878.1.S1_s_at	A	A1TS	POPTR_0007s03020	POPTR_0007s03020 (11)	scaffold_7:1755552-1755873(+) (11)	NA	NA	NA	AT1G31817.1	Ribosomal L18p/L5e family protein 	LOC_Os03g26860.1	"ribosomal protein, putative, expressed"	Medtr2g125760.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10880.1.A1_at	A	A1TS	POPTR_0006s28320	POPTR_0006s28320 (11)	scaffold_6:26034344-26034799(-) (11)	NA	O81772	Peroxidase 46	AT2G24800.1	Peroxidase superfamily protein 	LOC_Os04g42100.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g138570.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.108855.1.S1_s_at	A	A1TS	POPTR_0004s09180	POPTR_0004s09180 (11)	scaffold_4:7690005-7691125(+) (11)	NA	Q8RX28	Histone deacetylase 5	AT5G61060.1	histone deacetylase 5 	LOC_Os07g41090.1	"histone deacetylase, putative, expressed"	Medtr2g105140.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108857.1.S1_at	A	A1TS	POPTR_0008s06090	POPTR_0008s06090 (9)	scaffold_8:3602772-3604165(+) (9)	NA	P48760	"Folylpolyglutamate synthase, mitochondrial"	AT5G05980.2	DHFS-FPGS homolog B 	LOC_Os03g02030.1	"folylpolyglutamate synthase, mitochondrial precursor, putative, expressed"	Medtr5g088540.1	Folylpolyglutamate synthetase 	NA	NA	GO:0016020|membrane
PtpAffx.108865.1.S1_at	A	A1TS	POPTR_0009s08580	POPTR_0009s08580 (9)	scaffold_9:7810174-7810779(+) (9)	NA	NA	NA	AT4G33690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 543 Blast hits to 512 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 54; Plants - 72; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). 	LOC_Os07g11290.1	expressed protein	Medtr2g010570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10889.1.S1_s_at	A	A1TS	POPTR_0003s06370	POPTR_0003s06370 (11)	scaffold_3:7862196-7862376(+) (11)	NA	Q9ZRA4	Auxin-binding protein ABP19a	AT1G72610.1	germin-like protein 1 	LOC_Os08g35760.1	"Cupin domain containing protein, expressed"	Medtr8g024770.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.108897.1.S1_at	A	A1TS	POPTR_0005s26810	POPTR_0005s26810 (10)	scaffold_5:24680668-24682622(+) (10)	NA	NA	NA	AT4G35750.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os04g47330.1	"rho-GTPase-activating protein-related, putative, expressed"	Medtr5g023170.1	"Rho-GTPase-activating protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108918.1.S1_s_at	A	A1TS	POPTR_0013s06080	POPTR_0013s06080 (11)	scaffold_13:4492108-4493300(-) (11)	NA	Q9SRV2	Histone-lysine N-methyltransferase SUVR3	AT3G03750.2	SET domain protein 20 	LOC_Os01g56540.1	"histone-lysine N-methyltransferase SUVR3, putative, expressed"	Medtr8g147270.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.10892.2.S1_a_at	A	A2TS	POPTR_0001s27160	POPTR_0001s27160 (11)//POPTR_0009s06410 (11)	scaffold_1:26090799-26092548(-) (11)//scaffold_9:6196621-6198306(-) (11)	NA	Q9LDC0	42 kDa peptidyl-prolyl isomerase	AT3G21640.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os11g05090.1	"peptidyl-prolyl isomerase, putative, expressed"	Medtr4g049920.1	"Peptidylprolyl isomerase, FKBP-type; "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.10892.3.S1_a_at	A	A1TS	POPTR_0009s06410	POPTR_0009s06410 (11)	scaffold_9:6195294-6196101(-) (11)	NA	Q9LDC0	42 kDa peptidyl-prolyl isomerase	AT3G21640.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os11g05090.1	"peptidyl-prolyl isomerase, putative, expressed"	Medtr4g049920.1	"Peptidylprolyl isomerase, FKBP-type; "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.108942.1.S1_s_at	A	A1TS	POPTR_0014s15870	POPTR_0014s15870 (11)	scaffold_14:11957894-11959742(-) (11)	NA	Q84JU4	Protein-tyrosine-phosphatase IBR5	AT2G04550.1	indole-3-butyric acid response 5 	LOC_Os06g20340.1	"dual specificity protein phosphatase, putative, expressed"	Medtr5g092050.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.108947.1.S1_at	A	A1TS	POPTR_0017s04540	POPTR_0017s04540 (11)	scaffold_17:3499841-3500270(-) (11)	NA	Q9FE67	Ethylene-responsive transcription factor 9	AT5G44210.1	erf domain protein 9 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.108967.1.S1_at	A	A1TS	POPTR_0015s10750	POPTR_0015s10750 (11)	scaffold_15:11575196-11575744(-) (11)	NA	O75643	U5 small nuclear ribonucleoprotein 200 kDa helicase	AT1G20960.2	"U5 small nuclear ribonucleoprotein helicase, putative "	LOC_Os02g01740.1	"U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed"	Medtr2g076960.1	AAA ATPase; Sec63; ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.108979.1.S1_s_at	A	A1TS	POPTR_0030s00390	POPTR_0030s00390 (11)	scaffold_30:145338-146455(-) (11)//scaffold_5:3345659-3354655(-) (9)	POPTR_0005s05020 (8)//POPTR_0005s05040 (8)	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os12g42980.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.109009.1.S1_at	A	A1TS	POPTR_0002s02170	POPTR_0002s02170 (10)	scaffold_2:1202384-1202897(-) (11)	NA	NA	NA	AT1G75810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g031430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109010.1.S1_s_at	A	A1TS	POPTR_0008s12580	POPTR_0008s12580 (11)	scaffold_8:8145098-8146020(+) (11)	NA	Q8T7K0	ALG-2 interacting protein X	AT1G15130.1	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os10g35250.1	"vacuolar protein-sorting protein bro1, putative, expressed"	Medtr1g137820.1	"ALG2-interacting protein X, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109035.1.S1_s_at	A	A1TS	POPTR_0004s04350	POPTR_0004s04350 (11)	scaffold_4:3112630-3113460(-) (11)	POPTR_0011s05240 (8)	Q8VY10	Probable ubiquitin-conjugating enzyme E2 24	AT2G33770.1	phosphate 2 	LOC_Os05g48390.1	"ubiquitin conjugating enzyme protein, putative, expressed"	Medtr2g017250.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.109036.1.A1_at	A	A1TS	POPTR_0008s19450	POPTR_0008s19450 (11)	scaffold_8:13405272-13406317(+) (11)	NA	B0G107	Protein SAMHD1 homolog	AT5G40270.1	HD domain-containing metal-dependent phosphohydrolase family protein 	LOC_Os01g01920.2	"HD domain containing protein 2, putative, expressed"	Medtr5g035750.1	"Metal-dependent phosphohydrolase, HD region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109047.1.A1_a_at	A	A1TS	POPTR_0010s07300	POPTR_0010s07300 (11)	scaffold_10:8413779-8413817(+) (11)	NA	NA	NA	AT4G13540.1	unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23930.1); Has 4658 Blast hits to 3455 proteins in 431 species: Archae - 39; Bacteria - 387; Metazoa - 1842; Fungi - 436; Plants - 133; Viruses - 38; Other Eukaryotes - 1783 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109047.2.A1_at	A	A1MS	POPTR_0010s07300	POPTR_0010s07300 (11)	scaffold_10:8413825-8414046(+) (11)	NA	NA	NA	AT4G13540.1	unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23930.1); Has 4658 Blast hits to 3455 proteins in 431 species: Archae - 39; Bacteria - 387; Metazoa - 1842; Fungi - 436; Plants - 133; Viruses - 38; Other Eukaryotes - 1783 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109063.1.A1_at	A	A1TS	POPTR_0003s13700	POPTR_0003s13700 (11)	scaffold_3:14011092-14012013(+) (11)	NA	Q9BZJ0	Crooked neck-like protein 1	AT5G41770.1	"crooked neck protein, putative / cell cycle protein, putative "	LOC_Os05g22260.1	"crooked neck, putative, expressed"	Medtr5g009540.1	"RNA-processing protein, HAT helix "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	GO:0005622|intracellular
PtpAffx.109064.1.S1_at	A	A1TS	POPTR_0006s04760	POPTR_0006s04760 (10)	scaffold_6:3294081-3295675(-) (10)	NA	O22229	NADPH-dependent thioredoxin reductase 3	AT2G41680.1	NADPH-dependent thioredoxin reductase C 	LOC_Os07g46410.1	"bifunctional thioredoxin reductase/thioredoxin, putative, expressed"	Medtr5g024830.1	"Pyridine nucleotide-disulphide oxidoreductase, class-II "	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.109082.1.S1_at	A	A1TS	POPTR_0016s14310	POPTR_0016s14310 (10)	scaffold_16:13561732-13562880(-) (10)	NA	Q9ZUC1	"Quinone oxidoreductase-like protein At1g23740, chloroplastic"	AT1G23740.1	"Oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os08g29170.1	"dehydrogenase, putative, expressed"	Medtr6g012770.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.10911.1.S1_at	A	A1TS	POPTR_0011s12270	POPTR_0011s12270 (11)	scaffold_11:15032971-15033693(+) (11)	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g58170.1	"stem-specific protein TSJT1, putative, expressed"	Medtr2g014830.1	"Stem-specific protein TSJT1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109115.1.A1_at	A	A1MS	POPTR_0010s20490	POPTR_0010s20490 (10)	scaffold_10:18050096-18050603(+) (10)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT3G55640.1	Mitochondrial substrate carrier family protein 	LOC_Os03g16080.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g088430.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10912.1.S1_at	A	A1TS	POPTR_0001s28200	POPTR_0001s28200 (11)	scaffold_1:26964897-26964931(+) (11)	NA	Q8BL80	Rho GTPase-activating protein 22	AT5G19390.2	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g096580.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.10912.1.S1_s_at	A	A2TS	POPTR_0001s28200	POPTR_0009s07390 (11)//POPTR_0001s28200 (11)	scaffold_1:26963264-26964950(+) (11)//scaffold_9:6905490-6907633(+) (11)	NA	Q8BL80	Rho GTPase-activating protein 22	AT5G19390.2	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g096580.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.109125.1.A1_at	A	A1TS	POPTR_0011s14320	POPTR_0011s14320 (11)	scaffold_11:16767256-16767493(-) (11)	NA	A2YBX5	Protein kinase G11A	AT3G14370.1	Protein kinase superfamily protein 	LOC_Os03g14840.1	"AGC_PVPK_like_kin82y.8 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g119560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1092.1.A1_s_at	A	A1TS	POPTR_0019s13640	POPTR_0019s13640 (11)	scaffold_19:14500916-14500960(+) (11)	POPTR_0063s00200 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109285.1.S1_at	A	A1TS	POPTR_0006s24610	POPTR_0006s24610 (11)	scaffold_6:23204528-23205556(-) (11)	NA	NA	NA	AT5G11810.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g04260.1	expressed protein	Medtr1g020560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1093.1.S1_at	A	A1TS	POPTR_0004s23510	POPTR_0004s23510 (11)	scaffold_4:22213178-22213533(+) (11)	NA	O04486	Ras-related protein RABA2a	AT1G09630.1	RAB GTPase 11C 	LOC_Os05g01480.1	"ras-related protein, putative, expressed"	Medtr2g005340.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10930.1.A1_at	A	A1TS	POPTR_0012s07240	POPTR_0012s07240 (11)	scaffold_12:8023001-8023328(+) (11)	NA	NA	NA	AT1G74730.1	Protein of unknown function (DUF1118) 	LOC_Os01g40310.1	expressed protein	Medtr3g036520.1	Protein of unknown function DUF1118 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10930.2.S1_at	A	A1TS	POPTR_0015s07630	POPTR_0015s07630 (10)	scaffold_15:8893047-8893546(+) (10)	NA	NA	NA	AT1G74730.1	Protein of unknown function (DUF1118) 	LOC_Os01g40310.1	expressed protein	Medtr3g036520.1	Protein of unknown function DUF1118 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109301.1.S1_at	A	A1TS	POPTR_0006s05230	POPTR_0006s05230 (10)	scaffold_6:3685041-3685428(-) (10)	NA	P93756	G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1	AT2G41890.1	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr7g110670.1	"Apple; Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin "	NA	GO:0005529|sugar binding	NA
PtpAffx.10934.1.A1_a_at	A	A1TS	POPTR_0017s02890	POPTR_0017s02890 (11)	scaffold_17:2090893-2092034(-) (11)	NA	Q9JJW6	RNA and export factor-binding protein 2	AT5G37720.2	ALWAYS EARLY 4 	LOC_Os08g33120.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g087650.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.109349.1.S1_s_at	A	A1TS	POPTR_0018s06810	POPTR_0018s06810 (11)	scaffold_18:6860454-6861285(-) (11)	NA	Q9FJV0	Mitogen-activated protein kinase kinase 6	AT5G56580.1	MAP kinase kinase 6 	LOC_Os01g32660.1	"STE_MEK_ste7_MAP2K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g005140.1	Tyrosine protein kinase; Nuclear transport factor 2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10935.1.S1_at	A	A1TS	POPTR_0016s03370	POPTR_0016s03370 (11)	scaffold_16:1747675-1748915(-) (11)	NA	Q9M0N8	Mitotic-spindle organizing protein 1B	AT4G09550.1	AtGCP3 interacting protein 1 	LOC_Os03g60900.1	expressed protein	Medtr8g133830.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109370.1.S1_s_at	A	A1TS	POPTR_0015s05430	POPTR_0015s05430 (11)	scaffold_15:5785670-5786062(+) (11)	NA	P92973	Protein CCA1	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109379.1.S1_at	A	A1TS	POPTR_0006s23540	POPTR_0006s23540 (11)	scaffold_6:22254525-22256226(+) (11)	NA	NA	NA	AT2G26270.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g26870.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr3g139010.1	BRCT 	NA	NA	GO:0005622|intracellular
PtpAffx.109384.1.A1_at	A	A1TS	POPTR_0009s08480	POPTR_0009s08480 (10)	scaffold_9:7747059-7748733(-) (10)	NA	Q9LXC9	"Soluble inorganic pyrophosphatase 1, chloroplastic"	AT5G09650.1	pyrophosphorylase 6 	LOC_Os02g52940.2	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr2g010460.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
PtpAffx.109399.1.S1_at	A	A1MS	POPTR_0002s24510	POPTR_0002s24510 (11)	scaffold_2:21869481-21869894(-) (11)	NA	Q9FKC3	"Pentatricopeptide repeat-containing protein At5g48730, chloroplastic"	AT5G48730.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g07550.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g039890.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10942.1.S1_at	A	A1TS	POPTR_0018s13870	POPTR_0018s13870 (11)	scaffold_18:14161698-14161829(-) (11)	NA	Q9LL84	DNA ligase 4	AT5G57160.1	DNA ligase IV 	LOC_Os04g51700.1	"DNA ligase I, ATP-dependent family protein, expressed"	Medtr2g042770.1	"ATP-dependent DNA ligase; BRCT; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003910|DNA ligase (ATP) activity||GO:0005524|ATP binding	GO:0005622|intracellular
PtpAffx.109438.1.S1_at	A	A1TS	POPTR_0008s09810	POPTR_0008s09810 (10)	scaffold_8:6090068-6090587(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.109438.2.S1_a_at	A	A1TS	POPTR_0008s09810	POPTR_0008s09810 (11)	scaffold_8:6089507-6089699(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.109440.1.S1_at	A	A2TS	POPTR_0004s15320	POPTR_0004s15320 (11)//POPTR_0004s15330 (10)	scaffold_4:15974979-15975599(-) (11)//scaffold_4:15978706-15979328(-) (10)	NA	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.10946.1.S1_s_at	A	A1TS	POPTR_0003s04180	POPTR_0003s04180 (11)	scaffold_3:4887353-4887828(-) (11)	NA	Q9SGG3	Putative phospholipid-transporting ATPase 5	AT1G72700.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g36990.1	"phospholipid-transporting ATPase 4, putative, expressed"	Medtr2g120840.1	"ATPase, E1-E2 type "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.10948.1.S1_a_at	A	A1TS	POPTR_0003s13650	POPTR_0003s13650 (11)	scaffold_3:13978669-13978944(-) (11)	NA	NA	NA	AT5G41761.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g33200.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109483.1.A1_s_at	A	A1TS	POPTR_0001s47450	POPTR_0001s47450 (11)	scaffold_1:47650542-47650772(-) (11)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.109536.1.S1_s_at	A	A1TS	POPTR_0002s02340	POPTR_0002s02340 (11)	scaffold_2:1323785-1324154(+) (11)	POPTR_0005s26140 (8)	P18025	Tubulin beta-1 chain	AT1G20010.1	tubulin beta-5 chain 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.10956.1.S1_a_at	A	A1TS	POPTR_0017s08410	POPTR_0017s08410 (11)	scaffold_17:6928429-6928662(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G04910.1	O-fucosyltransferase family protein 	LOC_Os11g29120.1	"growth regulator related protein, putative, expressed"	Medtr1g129940.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10956.1.S1_at	A	A1TS	POPTR_0017s08410	POPTR_0017s08410 (10)	scaffold_17:6928324-6928820(-) (11)	POPTR_0001s32420 (8)	Q8W486	DUF246 domain-containing protein At1g04910	AT1G04910.1	O-fucosyltransferase family protein 	LOC_Os11g29120.1	"growth regulator related protein, putative, expressed"	Medtr1g129940.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10956.2.S1_at	A	A1TS	POPTR_0017s08410	POPTR_0017s08410 (9)	scaffold_17:6927776-6928121(-) (9)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G04910.1	O-fucosyltransferase family protein 	LOC_Os11g29120.1	"growth regulator related protein, putative, expressed"	Medtr1g129940.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109560.1.S1_at	A	A1TS	POPTR_0018s12960	POPTR_0018s12960 (11)	scaffold_18:13422556-13423778(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G26600.1	Glycosyl hydrolase superfamily protein 	LOC_Os06g40490.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr8g120870.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.10960.1.S1_at	A	A1TS	POPTR_0003s11910	POPTR_0003s11910 (11)	scaffold_3:12639878-12640709(+) (11)	POPTR_0001s08420 (7)	Q8H112	"PGR5-like protein 1A, chloroplastic"	AT4G22890.2	PGR5-LIKE A 	LOC_Os03g64020.2	expressed protein	Medtr5g011350.1	"PGR5-like protein 1A, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109609.1.S1_at	A	A1TS	POPTR_0006s00500	POPTR_0006s00500 (11)	scaffold_6:256176-256634(-) (11)	NA	Q8R3G1	Nuclear inhibitor of protein phosphatase 1	AT5G47790.1	SMAD/FHA domain-containing protein  	LOC_Os08g23680.3	"FHA domain containing protein, putative, expressed"	Medtr2g032980.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109739.1.S1_s_at	A	A1TS	POPTR_0014s18380	POPTR_0014s18380 (11)	scaffold_14:15483488-15483869(+) (11)	NA	Q9LN49	3-ketoacyl-CoA synthase 4	AT1G19440.1	3-ketoacyl-CoA synthase 4 	LOC_Os05g49290.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr4g095830.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.109764.1.S1_s_at	A	A1TS	POPTR_0005s23630	POPTR_0005s23630 (11)	scaffold_5:22343391-22344987(-) (11)	NA	Q8RXY0	Probable inactive protein kinase At3g63330	AT3G63340.1	Protein phosphatase 2C family protein 	LOC_Os11g37540.1	"protein phosphatase 2C, putative, expressed"	Medtr1g083790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.109766.1.S1_at	A	A1TS	POPTR_0001s41400	POPTR_0001s41400 (9)	scaffold_1:41022664-41023493(-) (9)	NA	NA	NA	AT3G15480.1	Protein of unknown function (DUF1218) 	LOC_Os07g27810.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109774.1.S1_at	A	A1TS	POPTR_0014s10830	POPTR_0014s10830 (9)	scaffold_14:8096403-8098323(+) (9)	NA	P18549	Isopenicillin N epimerase	AT3G62130.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g18640.1	"aminotransferase, putative, expressed"	Medtr1g105840.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109790.1.S1_at	A	A1TS	POPTR_0010s00560	POPTR_0010s00560 (11)	scaffold_10:309466-309891(+) (11)	NA	NA	NA	AT1G48300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os05g04620.1	expressed protein	Medtr8g133810.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109790.2.S1_a_at	A	A1TS	POPTR_0010s00560	POPTR_0010s00560 (11)	scaffold_10:308163-308401(+) (11)	NA	NA	NA	AT1G48300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os05g04620.1	expressed protein	Medtr8g133810.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10980.1.S1_at	A	A1TS	POPTR_0010s22880	POPTR_0010s22880 (11)	scaffold_10:19629176-19629302(-) (11)	NA	Q9SP55	V-type proton ATPase subunit G	AT3G01390.2	vacuolar membrane ATPase 10 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
PtpAffx.10980.1.S1_s_at	A	A1TS	POPTR_0010s22880	POPTR_0010s22880 (11)	scaffold_10:19629151-19630751(-) (11)	NA	Q9SP55	V-type proton ATPase subunit G	AT3G01390.2	vacuolar membrane ATPase 10 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
PtpAffx.109833.1.S1_at	A	A1TS	POPTR_0002s24710	POPTR_0002s24710 (10)	scaffold_2:21999011-22001037(-) (10)	NA	NA	NA	AT3G07210.1	unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). 	LOC_Os01g68830.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109857.1.S1_at	A	A1TS	POPTR_0005s07710	POPTR_0005s07710 (11)	scaffold_5:5279900-5279946(-) (11)	NA	Q6YC49	UDP-N-acetylglucosamine transporter	AT5G65000.1	Nucleotide-sugar transporter family protein 	LOC_Os02g36390.4	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr5g106860.1	Nucleotide-sugar transporter 	NA	NA	GO:0016020|membrane
PtpAffx.109871.1.S1_at	A	A1TS	POPTR_0010s11640	POPTR_0010s11640 (10)	scaffold_10:11824652-11825151(-) (10)	NA	NA	NA	AT1G68060.1	microtubule-associated proteins 70-1 	LOC_Os02g50320.1	"ATMAP70 protein, putative, expressed"	Medtr4g157060.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1099.1.A1_s_at	A	A1TS	POPTR_0018s06680	POPTR_0018s06680 (11)	scaffold_18:6726805-6727266(+) (11)	NA	O82197	Vacuolar protein sorting-associated protein 32 homolog 1	AT2G19830.1	SNF7 family protein 	LOC_Os06g40620.2	"SNF7 domain containing protein, putative, expressed"	Medtr4g160490.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.1099.2.S1_s_at	A	A2TS	POPTR_0006s25990	POPTR_0006s25990 (11)//POPTR_0018s00830 (11)	scaffold_18:725431-726074(-) (11)//scaffold_6:24279162-24279812(-) (11)	NA	Q8LFH7	60S ribosomal protein L37-1	AT1G15250.1	Zinc-binding ribosomal protein family protein 	LOC_Os02g56990.1	"ribosomal protein L37, putative, expressed"	Medtr4g009180.1	Ribosomal protein L37e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10990.1.S1_at	A	A1TS	POPTR_0018s09170	POPTR_0018s09170 (9)	scaffold_18:10051537-10052738(-) (9)	NA	Q8W593	"Probable lactoylglutathione lyase, chloroplast"	AT1G67280.1	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein 	LOC_Os05g14194.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10990.2.S1_a_at	A	A2TS	POPTR_0006s16370	POPTR_0006s16370 (11)//POPTR_0018s09170 (11)	scaffold_18:10054981-10055179(-) (11)//scaffold_6:14306003-14306224(+) (11)	NA	Q8W593	"Probable lactoylglutathione lyase, chloroplast"	AT1G67280.1	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein 	LOC_Os05g14194.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10990.2.S1_at	A	A1TS	POPTR_0006s16370	POPTR_0006s16370 (11)	scaffold_6:14305921-14305994(+) (11)	NA	Q8W593	"Probable lactoylglutathione lyase, chloroplast"	AT1G67280.1	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein 	LOC_Os05g14194.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109909.1.S1_at	A	A1TS	POPTR_0018s06820	POPTR_0018s06820 (9)	scaffold_18:6871428-6872308(+) (10)	NA	Q8VYZ3	Probable pectinesterase 53	AT5G19730.1	Pectin lyase-like superfamily protein 	LOC_Os01g53990.1	"pectinesterase, putative, expressed"	Medtr4g160050.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.109914.1.S1_s_at	A	A1TS	POPTR_0014s11330	POPTR_0014s11330 (11)	scaffold_14:8430618-8431249(-) (11)	NA	NA	NA	AT1G02380.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g106390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109942.1.S1_s_at	A	A1TS	POPTR_0002s16160	POPTR_0002s16160 (11)	scaffold_2:12082054-12082714(+) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os09g39640.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.109943.1.A1_at	A	A1TS	POPTR_0008s06230	POPTR_0008s06230 (9)	scaffold_8:3665806-3666109(-) (9)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G05940.1	ROP guanine nucleotide exchange factor 5 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr3g092590.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.109947.1.A1_at	A	A1TS	POPTR_0002s25090	POPTR_0002s25090 (10)	scaffold_2:22300759-22301618(+) (10)	NA	NA	NA	AT3G07400.1	lipase class 3 family protein 	LOC_Os02g28040.1	"lipase, putative, expressed"	Medtr8g012090.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.109949.1.A1_at	A	A1TS	POPTR_0009s03090	POPTR_0009s03090 (10)	scaffold_9:3786098-3787068(+) (10)	NA	Q3SZ21	Ribonuclease P protein subunit p30	AT5G59980.2	Polymerase/histidinol phosphatase-like 	LOC_Os11g01074.3	"RNase P subunit p30, putative, expressed"	Medtr2g114050.1	RNase P subunit p30 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004540|ribonuclease activity	NA
PtpAffx.109950.1.A1_at	A	A1TS	POPTR_0014s17140	POPTR_0014s17140 (11)	scaffold_14:13291257-13291548(-) (11)	NA	NA	NA	AT4G12750.1	Homeodomain-like transcriptional regulator 	LOC_Os01g48180.1	"DDT domain containing protein, putative, expressed"	Medtr4g161050.1	DDT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109957.1.A1_at	A	A1TS	POPTR_0006s25380	POPTR_0006s25380 (11)	scaffold_6:23770938-23772177(+) (11)	NA	O82318	Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790	AT2G25790.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os02g02140.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr3g130450.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.11.1.A1_at	A	A1TS	POPTR_0010s19560	POPTR_0010s19560 (10)	scaffold_10:17434814-17435329(-) (10)	NA	O67588	Chaperone protein ClpB	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110.1.S1_at	A	A1TS	POPTR_0016s03110	POPTR_0016s03110 (11)	scaffold_16:1555989-1556468(-) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G65600.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os08g02996.1	"receptor-like kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.110040.1.S1_at	A	A1TS	POPTR_0015s01460	POPTR_0015s01460 (10)	scaffold_15:893437-893670(-) (10)	NA	Q84WF5	Probable VAMP-like protein At1g33475	AT5G52990.1	SNARE-like superfamily protein 	LOC_Os08g44430.2	"vesicle-associated membrane protein 727, putative, expressed"	Medtr3g123790.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110058.1.A1_at	A	A1TS	POPTR_0019s05970	POPTR_0019s05970 (11)	scaffold_19:6394266-6394786(-) (11)	NA	NA	NA	AT5G17510.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g27994.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11008.1.A1_at	A	A1TS	POPTR_0006s03430	POPTR_0006s03430 (11)	scaffold_6:2216387-2217710(-) (11)	NA	Q9M0N8	Mitotic-spindle organizing protein 1B	AT4G09550.1	AtGCP3 interacting protein 1 	LOC_Os03g60900.1	expressed protein	Medtr8g133830.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110084.1.A1_s_at	A	A1TS	POPTR_0003s18970	POPTR_0003s18970 (10)	scaffold_3:17843583-17850609(+) (10)//scaffold_393:16081-16393(+) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11009.1.S1_a_at	A	A1TS	POPTR_0015s01650	POPTR_0015s01650 (11)	scaffold_15:1060632-1060980(+) (11)	NA	NA	NA	AT5G53420.1	CCT motif family protein 	LOC_Os05g51690.1	"CCT motif family protein, expressed"	Medtr1g009330.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11009.3.S1_at	A	A1MS	POPTR_0010s05840	POPTR_0010s05840 (10)	scaffold_10:7302754-7303087(-) (10)	NA	Q42656	Alpha-galactosidase	AT3G26380.1	Melibiase family protein 	LOC_Os01g33420.1	"glycosyl hydrolase family protein 27, putative, expressed"	Medtr3g102420.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1101.1.A1_at	A	A1TS	POPTR_0004s09060	POPTR_0004s09060 (11)	scaffold_4:7608930-7609427(+) (11)	NA	NA	NA	AT5G17460.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g03500.1	expressed protein	Medtr5g094540.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110120.1.S1_at	A	A1TS	POPTR_0010s05300	POPTR_0010s05300 (10)	scaffold_10:6763033-6764044(+) (10)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.11013.1.A1_at	A	A1TS	POPTR_0012s04100	POPTR_0012s04100 (11)	scaffold_12:3319186-3319237(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g080810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110145.1.A1_at	A	A1TS	POPTR_0008s17460	POPTR_0008s17460 (9)	scaffold_8:11736811-11737152(+) (9)	NA	P54697	Myosin-J heavy chain	AT5G43900.3	myosin 2 	LOC_Os02g34080.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.110147.1.A1_s_at	A	A1TS	POPTR_0025s00750	POPTR_0025s00750 (11)	scaffold_25:410088-410252(+) (11)	NA	Q3EAR7	Probable glycosyltransferase At3g42180	AT3G42180.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr8g121620.1	Exostosin-like 	NA	NA	GO:0016021|integral to membrane
PtpAffx.110158.2.A1_s_at	A	A1TS	POPTR_0003s15810	POPTR_0003s15810 (11)	scaffold_3:15516331-15516561(+) (11)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G47910.1	respiratory burst oxidase homologue D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.110159.1.A1_at	A	A1TS	POPTR_0015s12100	POPTR_0015s12100 (9)	scaffold_15:12514728-12514865(+) (9)	NA	Q9FLT2	Inositol polyphosphate multikinase beta	AT5G61760.1	inositol polyphosphate kinase 2 beta 	LOC_Os02g32370.1	"inositol hexaphosphate kinase, putative, expressed"	Medtr8g043170.1	Inositol polyphosphate kinase 	NA	GO:0008440|inositol trisphosphate 3-kinase activity	NA
PtpAffx.11018.2.A1_a_at	A	A2TS	POPTR_0001s26930	POPTR_0009s06160 (11)//POPTR_0001s26930 (11)	scaffold_1:25914258-25914492(-) (11)//scaffold_9:6028427-6028670(-) (11)	NA	Q869R1	CTL-like protein DDB_G0274487	AT5G13760.1	Plasma-membrane choline transporter family protein 	LOC_Os07g46240.1	"choline transporter-related, putative, expressed"	Medtr3g040220.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11018.2.A1_at	A	A1TS	POPTR_0001s26930	POPTR_0001s26930 (11)	scaffold_1:25913952-25914584(-) (11)	NA	Q869R1	CTL-like protein DDB_G0274487	AT5G13760.1	Plasma-membrane choline transporter family protein 	LOC_Os07g46240.1	"choline transporter-related, putative, expressed"	Medtr3g040220.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11018.3.A1_a_at	A	A1TS	POPTR_0009s06160	POPTR_0009s06160 (11)	scaffold_9:6028021-6028438(-) (11)	NA	Q4PIP8	Protein PNS1	AT5G13760.1	Plasma-membrane choline transporter family protein 	LOC_Os07g46240.1	"choline transporter-related, putative, expressed"	Medtr3g040220.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11019.1.S1_at	A	A1TS	POPTR_0014s17280	POPTR_0014s17280 (11)	scaffold_14:13397847-13401907(-) (11)	NA	P42814	Ribonuclease 2	AT2G39780.1	ribonuclease 2 	LOC_Os01g67180.1	"ribonuclease T2 family domain containing protein, expressed"	AC233651_10.1	Ribonuclease T2 AC233651.1 24866-22504 F EGN_Mt090430 200	NA	GO:0033897|ribonuclease T2 activity||GO:0003723|RNA binding	NA
PtpAffx.110191.1.S1_s_at	A	A1TS	POPTR_0006s25050	POPTR_0006s25050 (11)	scaffold_6:23493978-23495998(-) (11)	NA	Q8VY07	Clathrin interactor EPSIN 1	AT5G11710.1	ENTH/VHS family protein 	LOC_Os04g51120.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110213.1.S1_at	A	A1TS	POPTR_0005s06870	POPTR_0005s06870 (10)	scaffold_5:4610619-4610936(-) (10)	NA	Q9FY89	Vacuolar protein sorting-associated protein 20 homolog 2	AT5G09260.1	vacuolar protein sorting-associated protein 20.2 	LOC_Os02g38300.1	"SNF7 domain containing protein, putative, expressed"	Medtr3g142880.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.110314.1.S1_at	A	A1TS	POPTR_0019s08700	POPTR_0019s08700 (9)	scaffold_19:10226296-10226431(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11032.1.S1_at	A	A1TS	POPTR_0008s05640	POPTR_0008s05640 (9)	scaffold_8:3277604-3278263(+) (9)	NA	P48491	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
PtpAffx.110326.1.S1_at	A	A1TS	POPTR_0005s06330	POPTR_0005s06330 (9)	scaffold_5:4200755-4200992(+) (9)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT1G53570.4	mitogen-activated protein kinase kinase kinase 3 	LOC_Os11g10100.1	"STE_MEKK_ste11_MAP3K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g143420.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11034.1.S1_a_at	A	A1TS	POPTR_0005s08740	POPTR_0005s08740 (11)	scaffold_5:6092178-6094493(+) (11)	NA	Q9XIK3	"Iron-sulfur assembly protein IscA, chloroplastic"	AT1G10500.1	chloroplast-localized ISCA-like protein 	LOC_Os06g05400.1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"	Medtr4g141040.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110344.1.S1_at	A	A1TS	POPTR_0007s11000	POPTR_0007s11000 (11)	scaffold_7:11250883-11252866(-) (11)	POPTR_0005s18140 (6)	Q8N2M8	"Splicing factor, arginine/serine-rich 16"	AT4G36980.4	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). "	LOC_Os03g27840.1	"splicing factor, arginine/serine-rich 16, putative, expressed"	Medtr5g017370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110351.1.S1_at	A	A1TS	POPTR_0001s12210	POPTR_0001s12210 (11)	scaffold_1:9452530-9452880(-) (11)	NA	NA	NA	AT4G20090.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g43010.2	"transposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110351.2.S1_a_at	A	A1TS	POPTR_0001s12210	POPTR_0001s12210 (11)	scaffold_1:9454741-9455147(-) (11)	NA	NA	NA	AT4G20090.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g43010.2	"transposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110365.1.S1_s_at	A	A1TS	POPTR_0017s11950	POPTR_0017s11950 (11)	scaffold_17:12047169-12048347(+) (11)	NA	Q9FJL0	Structural maintenance of chromosomes protein 4	AT5G48600.2	structural maintenance of chromosome 3 	LOC_Os05g41750.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	Medtr8g087350.1	Prefoldin; SMCs flexible hinge 	GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0005694|chromosome
PtpAffx.11040.1.A1_a_at	A	A2TS	POPTR_0004s06300	POPTR_0011s03140 (11)//POPTR_0004s06300 (11)	scaffold_11:3200596-3201515(-) (11)//scaffold_4:4997444-4998894(-) (11)	NA	Q40872	Floral homeotic protein AGAMOUS	AT4G18960.1	K-box region and MADS-box transcription factor family protein  	LOC_Os01g10504.3	"OsMADS3 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g136380.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11040.1.A1_at	A	A1TS	POPTR_0004s06300	POPTR_0004s06300 (9)	scaffold_4:4997276-4999198(-) (11)	NA	Q40872	Floral homeotic protein AGAMOUS	AT4G18960.1	K-box region and MADS-box transcription factor family protein  	LOC_Os01g10504.3	"OsMADS3 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g136380.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.110427.1.S1_at	A	A1TS	POPTR_0010s16290	POPTR_0010s16290 (10)	scaffold_10:15261730-15262151(-) (10)	NA	Q9FY74	Calmodulin-binding transcription activator 1	AT5G09410.1	ethylene induced calmodulin binding protein 	LOC_Os03g09100.1	"calmodulin-binding transcription activator, putative, expressed"	Medtr2g008890.1	IQ calmodulin-binding region; CG-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110427.2.S1_a_at	A	A1TS	POPTR_0010s16290	POPTR_0010s16290 (11)	scaffold_10:15261815-15262676(-) (11)	NA	Q9FY74	Calmodulin-binding transcription activator 1	AT5G09410.1	ethylene induced calmodulin binding protein 	LOC_Os03g09100.1	"calmodulin-binding transcription activator, putative, expressed"	Medtr2g008890.1	IQ calmodulin-binding region; CG-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11051.1.A1_s_at	A	A1TS	POPTR_0007s08330	POPTR_0007s08330 (11)	scaffold_7:6996550-6997160(+) (11)	NA	Q8LGM7	Molybdenum cofactor sulfurase	AT1G16540.1	molybdenum cofactor sulfurase (LOS5) (ABA3) 	LOC_Os06g45860.1	"molybdenum cofactor sulfurase, putative, expressed"	Medtr4g032080.1	"Aminotransferase, class V; MOSC; MOSC, N-terminal beta barrel; "	NA	GO:0003824|catalytic activity||GO:0030151|molybdenum ion binding||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.110534.1.S1_at	A	A1TS	POPTR_0001s05810	POPTR_0001s05810 (11)	scaffold_1:4547626-4547709(-) (11)	NA	NA	NA	AT5G13470.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11054.1.S1_at	A	A1TS	POPTR_0006s07030	POPTR_0006s07030 (9)	scaffold_6:5065465-5067026(-) (9)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os08g12830.1	"cytidylyltransferase domain containing protein, expressed"	Medtr4g161000.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.11054.2.S1_at	A	A1TS	POPTR_0018s13260	POPTR_0018s13260 (11)	scaffold_18:13643416-13645290(-) (11)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os10g24810.1	"cytidylyltransferase domain containing protein, expressed"	Medtr4g161000.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.1106.1.A1_at	A	A1TS	POPTR_0001s14870	POPTR_0001s14870 (9)	scaffold_1:11680545-11680578(+) (9)	NA	Q9XHS0	40S ribosomal protein S12	AT2G32060.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g05580.1	"ribosomal protein L7Ae, putative, expressed"	Medtr5g012950.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1106.1.A1_s_at	A	A1TS	POPTR_0001s14870	POPTR_0001s14870 (11)	scaffold_1:11679636-11680420(+) (11)	NA	Q9XHS0	40S ribosomal protein S12	AT2G32060.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g05580.1	"ribosomal protein L7Ae, putative, expressed"	Medtr5g012950.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110616.1.A1_at	A	A1TS	POPTR_0018s06280	POPTR_0018s06280 (11)	scaffold_18:6032860-6033630(+) (11)	NA	O75165	DnaJ homolog subfamily C member 13	AT2G26890.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g42439.1	"heat shock protein DnaJ, putative, expressed"	Medtr8g118640.1	"GRV2 ; binding, putative "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.11064.1.A1_a_at	A	A1MS	POPTR_0005s17440	POPTR_0005s17440 (11)	scaffold_5:14816186-14816466(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11064.2.A1_at	A	A1TS	POPTR_0014s11640	POPTR_0014s11640 (11)	scaffold_14:8633348-8634508(-) (11)	NA	NA	NA	AT1G47820.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g50350.1	expressed protein	Medtr3g073610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11067.1.S1_at	A	A1MS	POPTR_0008s20630	POPTR_0008s20630 (11)	scaffold_8:14393001-14393321(-) (11)	NA	A7S4N4	Probable serine incorporator	AT3G06170.1	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os03g34300.1	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.110681.1.A1_s_at	A	A1TS	POPTR_0017s06360	POPTR_0017s06360 (11)	scaffold_17:4879251-4879884(+) (11)	NA	A4IHW3	Probable UDP-sugar transporter protein SLC35A4	AT3G59360.2	UDP-galactose transporter 6 	LOC_Os02g39200.1	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr1g146890.1	Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
PtpAffx.1107.1.A1_s_at	A	A1TS	POPTR_0010s22480	POPTR_0010s22480 (11)	scaffold_10:19393505-19393607(+) (11)	NA	Q9FT52	"ATP synthase subunit d, mitochondrial"	AT3G52300.1	"ATP synthase D chain, mitochondrial "	LOC_Os08g37320.1	expressed protein	Medtr1g122040.1	"ATP synthase D chain, mitochondrial, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1107.2.S1_at	A	A1TS	POPTR_0008s04340	POPTR_0008s04340 (10)	scaffold_8:2426696-2426985(-) (10)	NA	Q9FT52	"ATP synthase subunit d, mitochondrial"	AT3G52300.1	"ATP synthase D chain, mitochondrial "	LOC_Os08g37320.1	expressed protein	Medtr1g122040.1	"ATP synthase D chain, mitochondrial, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110701.1.A1_at	A	A1TS	POPTR_0001s23510	POPTR_0001s23510 (11)	scaffold_1:22905290-22905556(-) (11)	NA	Q5RF97	Box C/D snoRNA protein 1	AT1G04945.2	HIT-type Zinc finger family protein 	LOC_Os01g73150.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110715.1.A1_s_at	A	A3TS	POPTR_0016s02220	POPTR_0016s02230 (11)//POPTR_0016s02260 (11)//POPTR_0016s02220 (11)	scaffold_16:1073497-1073830(+) (11)//scaffold_16:1080362-1080695(+) (11)//scaffold_16:1097424-1097757(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22380.1	UDP-glucosyl transferase 85A3 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11077.1.A1_at	A	A1TS	POPTR_0002s19630	POPTR_0002s19630 (11)	scaffold_2:15574137-15574511(-) (11)	NA	Q93WV5	Probable WRKY transcription factor 69	AT3G58710.2	WRKY DNA-binding protein 69 	LOC_Os02g47060.1	"OsWRKY66 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g133050.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.11077.4.A1_s_at	A	A1TS	POPTR_0014s11490	POPTR_0014s11490 (11)	scaffold_14:8527604-8528124(-) (11)	NA	Q93WV5	Probable WRKY transcription factor 69	AT3G58710.2	WRKY DNA-binding protein 69 	LOC_Os01g54600.1	"OsWRKY13 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g133050.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.1108.2.A1_a_at	A	A2TS	POPTR_0005s14080	POPTR_0005s14080 (11)//POPTR_0007s11620 (11)	scaffold_5:11136614-11136836(+) (11)//scaffold_7:11992534-11992747(-) (11)	NA	Q84TE9	Dof zinc finger protein DOF5.3	AT5G60200.1	TARGET OF MONOPTEROS 6 	LOC_Os03g55610.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr7g025880.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.1108.2.A1_at	A	A1TS	POPTR_0007s11620	POPTR_0007s11620 (10)	scaffold_7:11992309-11992858(-) (11)	NA	Q9LSL6	Dof zinc finger protein DOF5.7	AT5G65590.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os03g55610.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr7g025880.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.1108.3.A1_a_at	A	A1TS	POPTR_0005s14080	POPTR_0005s14080 (10)	scaffold_5:11136202-11136867(+) (10)	NA	Q84TE9	Dof zinc finger protein DOF5.3	AT5G60200.1	TARGET OF MONOPTEROS 6 	LOC_Os03g55610.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr7g025880.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.110813.1.A1_at	A	A1TS	POPTR_0016s10280	POPTR_0016s10280 (10)	scaffold_16:8487770-8488649(-) (10)	NA	NA	NA	AT2G37860.3	Protein of unknown function (DUF3411) 	LOC_Os04g44290.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110819.1.S1_at	A	A1MS	POPTR_0018s14750	POPTR_0018s14750 (11)	scaffold_18:14844247-14844512(+) (11)	NA	NA	NA	AT5G58100.1	unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g26984.1	expressed protein	Medtr5g019420.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110825.1.S1_at	A	A1TS	POPTR_0006s21030	POPTR_0006s21030 (10)	scaffold_6:20150094-20150323(-) (10)	NA	Q9M2F8	Carbon catabolite repressor protein 4 homolog 2	AT3G58580.1	DNAse I-like superfamily protein 	LOC_Os10g27230.3	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC235488_23.1	Endonuclease/exonuclease/phosphatase AC235488.1 111535-108488 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110831.1.S1_at	A	A1TS	POPTR_0016s08760	POPTR_0016s08760 (10)	scaffold_16:6550206-6550856(-) (10)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110867.1.S1_s_at	A	A1TS	POPTR_0016s09280	POPTR_0016s09280 (11)	scaffold_16:7262706-7262756(-) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.110886.1.S1_at	A	A1TS	POPTR_0006s02800	POPTR_0006s02800 (10)	scaffold_6:1769443-1771095(+) (10)	NA	Q9M1K3	Probable aquaporin SIP2-1	AT3G56950.2	small and basic intrinsic protein 2;1 	LOC_Os03g20410.1	"aquaporin SIP2-1, putative, expressed"	Medtr7g105100.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110895.1.S1_at	A	A1TS	POPTR_0010s13620	POPTR_0010s13620 (11)	scaffold_10:13436868-13437688(+) (11)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	LOC_Os06g15370.1	"peptide transporter PTR2, putative, expressed"	Medtr5g068370.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.11092.1.S1_at	A	A1TS	POPTR_0018s02820	POPTR_0018s02820 (11)	scaffold_18:2494915-2496195(+) (11)	NA	NA	NA	AT2G24860.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os09g25590.1	"tsi1-interacting protein TSIP1, putative, expressed"	Medtr3g138530.1	"Tsi1-interacting protein TSIP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110923.1.S1_at	A	A1TS	POPTR_0013s01870	POPTR_0013s01870 (10)	scaffold_13:1083153-1083707(+) (10)	NA	Q03685	Luminal-binding protein 5	AT5G28540.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11095.1.S1_at	A	A1TS	POPTR_0001s42170	POPTR_0001s42170 (10)	scaffold_1:41922373-41922644(+) (10)	NA	NA	NA	AT2G36740.1	sequence-specific DNA binding transcription factors;DNA binding;DNA binding 	LOC_Os08g09320.1	"YL1 nuclear protein C-terminal domain containing protein, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.110954.1.S1_a_at	A	A1TS	POPTR_0018s01680	POPTR_0018s01680 (11)	scaffold_18:1541277-1541508(-) (11)	NA	Q3E958	Ethylene-responsive transcription factor SHINE 3	AT5G25390.2	Integrase-type DNA-binding superfamily protein 	LOC_Os02g10760.1	"AP2 domain containing protein, expressed"	Medtr8g120410.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.110954.1.S1_at	A	A1TS	POPTR_0018s01680	POPTR_0018s01680 (11)	scaffold_18:1541238-1541424(-) (11)	NA	Q3E958	Ethylene-responsive transcription factor SHINE 3	AT5G25390.2	Integrase-type DNA-binding superfamily protein 	LOC_Os02g10760.1	"AP2 domain containing protein, expressed"	Medtr8g120410.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.110996.1.S1_s_at	A	A1TS	POPTR_0001s13510	POPTR_0001s13510 (11)	scaffold_1:10589523-10590606(-) (11)	NA	Q43793	"Glucose-6-phosphate 1-dehydrogenase, chloroplastic"	AT5G13110.1	glucose-6-phosphate dehydrogenase 2 	LOC_Os07g22350.1	"glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed"	Medtr7g022440.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
PtpAffx.111008.1.S1_at	A	A1TS	POPTR_0009s10350	POPTR_0009s10350 (9)	scaffold_9:8905826-8906204(-) (9)	NA	NA	NA	AT2G15560.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os08g13390.2	expressed protein	Medtr4g130000.1	Protein of unknown function DUF537 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111030.1.S1_at	A	A1TS	POPTR_0019s09690	POPTR_0019s09690 (11)	scaffold_19:11303981-11304502(-) (11)	NA	O59729	Uncharacterized protein slp1	AT1G71360.1	Galactose-binding protein 	LOC_Os01g65520.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr4g032100.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111048.1.S1_at	A	A1TS	POPTR_0007s14380	POPTR_0007s14380 (11)	scaffold_7:14181336-14182450(+) (11)	NA	Q8VYN6	"6-phosphofructokinase 5, chloroplastic"	AT2G22480.1	phosphofructokinase 5 	LOC_Os09g24910.2	"phosphofructokinase, putative, expressed"	Medtr5g034000.1	Phosphofructokinase 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0003872|6-phosphofructokinase activity	GO:0005945|6-phosphofructokinase complex
PtpAffx.111056.1.S1_s_at	A	A1TS	POPTR_0010s16630	POPTR_0010s16630 (11)	scaffold_10:15527580-15528818(+) (11)	NA	O05235	Uncharacterized hydrolase yugF	AT1G13820.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41080.1	"hydrolase, alpha/beta fold family domain containing protein"	Medtr5g047260.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111076.1.S1_at	A	A1TS	POPTR_0005s20190	POPTR_0005s20190 (9)	scaffold_5:19235038-19235399(+) (11)	NA	Q6MEG4	Ribosomal RNA small subunit methyltransferase H	AT5G10910.1	mraW methylase family protein 	LOC_Os02g04500.2	"S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed"	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.111108.1.S1_at	A	A1TS	POPTR_0011s11100	POPTR_0011s11100 (11)	scaffold_11:13767723-13768127(+) (11)	NA	P81898	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	AT3G14920.1	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein 	LOC_Os01g10930.1	"peptide-N4-asparagine amidase A, putative, expressed"	Medtr1g028750.1	"Peptide-N4-asparagine amidase A, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111110.2.S1_at	A	A1TS	POPTR_0002s13670	POPTR_0002s13670 (10)	scaffold_2:10143397-10143702(-) (10)	NA	NA	NA	AT3G60210.1	GroES-like family protein 	LOC_Os10g41710.1	"chaperonin, putative, expressed"	Medtr8g009080.1	GroES-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.111125.1.S1_at	A	A1TS	POPTR_0004s09020	POPTR_0004s09020 (10)	scaffold_4:7582299-7582348(+) (10)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11113.1.A1_at	A	A1MS	POPTR_0003s18300	POPTR_0003s18300 (10)	scaffold_3:17440402-17440648(+) (10)	NA	NA	NA	AT1G80940.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g55080.1	"snf1-related kinase interactor 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11117.1.A1_at	A	A1TS	POPTR_0006s29490	POPTR_0006s29490 (11)	scaffold_6:26837932-26840195(-) (11)	POPTR_0006s29540 (6)	Q9M086	DDB1- and CUL4-associated factor homolog 1	AT4G20325.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g40050.1	"ribonuclease H2 subunit B, putative, expressed"	Medtr3g133060.1	"Ribonuclease H2 subunit B, related "	NA	NA	GO:0005634|nucleus
PtpAffx.111195.1.S1_at	A	A1TS	POPTR_0005s26790	POPTR_0005s26790 (11)	scaffold_5:24670012-24670215(+) (11)	NA	Q9SYM1	Uncharacterized mscS family protein At1g78610	AT1G53470.1	mechanosensitive channel of small conductance-like 4 	LOC_Os02g44770.1	"uncharacterized mscS family protein, putative, expressed"	Medtr1g143150.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.1112.1.A1_s_at	A	A1TS	POPTR_0003s12230	POPTR_0003s12230 (11)	scaffold_3:12883180-12883966(+) (11)	NA	NA	NA	AT4G11740.1	Ubiquitin-like superfamily protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111235.1.S1_at	A	A1TS	POPTR_0009s14720	POPTR_0009s14720 (11)	scaffold_9:11468712-11470950(+) (11)	NA	Q93ZB9	Fatty acyl-CoA reductase 3	AT4G33790.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111246.1.S1_at	A	A1MS	POPTR_0001s35390	POPTR_0001s35390 (9)	scaffold_1:33736594-33736913(+) (9)	NA	P15792	Protein kinase PVPK-1	AT3G27580.2	Protein kinase superfamily protein 	LOC_Os09g08420.1	"AGC_PVPK_like_kin82y.15 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.111296.1.S1_s_at	A	A1TS	POPTR_0005s12770	POPTR_0005s12770 (11)	scaffold_5:9584692-9586013(+) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.111323.1.S1_s_at	A	A1TS	POPTR_0006s20340	POPTR_0006s20340 (11)	scaffold_6:19397161-19398540(-) (11)	NA	Q10710	Sugar carrier protein A	AT4G02050.1	sugar transporter protein 7 	LOC_Os09g24924.1	"transporter family protein, putative, expressed"	Medtr8g122780.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.111335.1.S1_s_at	A	A1TS	POPTR_0001s24240	POPTR_0001s24240 (11)	scaffold_1:23587922-23588521(+) (11)	NA	NA	NA	AT5G59790.1	Domain of unknown function (DUF966) 	LOC_Os01g62200.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g078980.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111422.1.S1_s_at	A	A1TS	POPTR_0004s18390	POPTR_0004s18390 (11)	scaffold_4:18297887-18299109(+) (11)	NA	P80093	"Phytoene dehydrogenase, chloroplastic/chromoplastic"	AT4G14210.1	phytoene desaturase 3 	LOC_Os04g47290.2	"amine oxidase, putative, expressed"	Medtr1g096350.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.111453.1.S1_at	A	A1TS	POPTR_0009s05950	POPTR_0009s05950 (11)	scaffold_9:5903734-5904236(-) (11)	NA	Q9SPL4	Vicilin-like antimicrobial peptides 2-2	AT2G28490.1	RmlC-like cupins superfamily protein 	LOC_Os03g21790.1	"cupin domain containing protein, expressed"	Medtr2g111050.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.111467.1.S1_at	A	A1MS	POPTR_0011s06740	POPTR_0011s06740 (9)	scaffold_11:7400049-7400564(-) (9)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.111473.1.S1_at	A	A1TS	POPTR_0010s18610	POPTR_0010s18610 (10)	scaffold_10:16814353-16818152(-) (10)	NA	O43120	Splicing factor U2AF-associated protein 2	AT5G16260.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g41910.1	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.111490.2.S1_a_at	A	A1TS	POPTR_0014s07530	POPTR_0014s07530 (11)	scaffold_14:5660007-5660442(-) (11)	NA	Q6DW73	"Digalactosyldiacylglycerol synthase 2, chloroplastic"	AT4G00550.1	digalactosyl diacylglycerol deficient 2 	LOC_Os03g11560.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr6g093420.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.111508.1.S1_at	A	A1TS	POPTR_0006s25850	POPTR_0006s25850 (11)	scaffold_6:24198867-24200340(-) (11)	NA	P33399	La protein homolog	AT4G32720.2	La protein 1 	LOC_Os02g39700.1	"RNA binding protein, putative, expressed"	Medtr2g024800.1	RNA-binding region RNP-1 (RNA recognition motif); Winged helix repressor DNA-binding 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.111515.1.S1_at	A	A1TS	POPTR_0010s10340	POPTR_0010s10340 (11)	scaffold_10:10889289-10889653(-) (11)	NA	Q8LC03	Homeobox-leucine zipper protein ATHB-13	AT1G69780.1	Homeobox-leucine zipper protein family 	LOC_Os03g07450.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g040020.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.111525.1.S1_at	A	A1TS	POPTR_0002s06170	POPTR_0002s06170 (9)	scaffold_2:4135650-4135954(+) (9)	NA	Q7Y1V5	Cytochrome P450 78A11	AT5G09970.1	"cytochrome P450, family 78, subfamily A, polypeptide 7 "	LOC_Os10g26340.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.111536.1.S1_at	A	A1TS	POPTR_0018s10440	POPTR_0018s10440 (11)	scaffold_18:11368491-11368904(+) (11)	NA	P53118	Putative lipase ROG1	AT4G25770.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g34750.1	"serine esterase family protein, putative, expressed"	Medtr8g128330.2	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11154.1.S1_s_at	A	A1TS	POPTR_0008s11990	POPTR_0008s11990 (11)	scaffold_8:7730298-7730753(-) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11154.2.S1_at	A	A1TS	POPTR_0010s13420	POPTR_0010s13420 (11)	scaffold_10:13272065-13272444(+) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11154.3.S1_a_at	A	A1TS	POPTR_0010s13420	POPTR_0010s13420 (11)	scaffold_10:13271864-13272194(+) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111557.1.S1_at	A	A1MS	POPTR_0009s16370	POPTR_0009s16370 (9)	scaffold_9:12460694-12461348(-) (10)	NA	NA	NA	AT5G22210.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111558.1.S1_s_at	A	A1TS	POPTR_0001s09760	POPTR_0001s09760 (11)	scaffold_1:7501115-7502179(+) (11)	NA	NA	NA	AT1G28140.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2301, transmembrane (InterPro:IPR019275); Has 140 Blast hits to 140 proteins in 72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). "	LOC_Os03g63360.1	"glutathione S-transferase, putative, expressed"	Medtr1g126130.1	"Multicopper oxidase, type 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111567.1.S1_at	A	A1TS	POPTR_0011s12530	POPTR_0011s12530 (9)	scaffold_11:15274530-15274731(-) (9)	NA	Q38945	PAP-specific phosphatase HAL2-like	AT5G54390.1	HAL2-like 	LOC_Os02g56170.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.111579.1.S1_at	A	A1TS	POPTR_0004s17160	POPTR_0004s17160 (10)	scaffold_4:17494721-17496986(-) (10)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.2	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr4g097630.1	YEATS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.111584.1.S1_at	A	A1MS	POPTR_0002s23780	POPTR_0002s23780 (9)	scaffold_2:21276960-21277386(-) (9)	NA	NA	NA	AT3G26780.1	Phosphoglycerate mutase family protein 	LOC_Os11g31880.1	"phosphoglycerate mutase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11164.1.A1_a_at	A	A1TS	POPTR_0009s12870	POPTR_0009s12870 (11)	scaffold_9:10417152-10418224(+) (11)	NA	NA	NA	AT5G15320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g097560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11164.2.A1_at	A	A1MS	POPTR_0009s12870	POPTR_0009s12870 (11)	scaffold_9:10418028-10418224(+) (11)	NA	NA	NA	AT5G15320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g097560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11164.3.A1_at	A	A1MS	POPTR_0009s12870	POPTR_0009s12870 (11)	scaffold_9:10417211-10417332(+) (11)	NA	NA	NA	AT5G15320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g097560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11165.1.S1_s_at	A	A1TS	POPTR_0012s10770	POPTR_0012s10770 (9)	scaffold_12:11455727-11455964(-) (9)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
PtpAffx.111653.1.S1_s_at	A	A1TS	POPTR_0018s12020	POPTR_0018s12020 (11)	scaffold_18:12641722-12641821(-) (11)	NA	Q92564	DCN1-like protein 4	AT1G15860.2	Domain of unknown function (DUF298) 	LOC_Os08g34070.1	"DCN1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111655.1.S1_at	A	A1TS	POPTR_0010s17950	POPTR_0010s17950 (10)	scaffold_10:16373418-16373532(+) (10)	NA	Q0WU02	Metal tolerance protein 10	AT1G16310.1	Cation efflux family protein 	LOC_Os01g03914.2	"cation efflux family protein, putative, expressed"	Medtr3g110280.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.111671.1.S1_at	A	A1TS	POPTR_0014s03510	POPTR_0014s03510 (10)	scaffold_14:2816452-2818026(-) (10)	NA	Q8GZD4	Nucleobase-ascorbate transporter 3	AT2G26510.1	Xanthine/uracil permease family protein 	LOC_Os12g39420.9	"nucleobase-ascorbate transporter, putative, expressed"	Medtr1g025100.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.111678.1.S1_at	A	A1TS	POPTR_0010s03970	POPTR_0010s03970 (9)	scaffold_10:4767621-4769892(-) (9)	NA	Q4P9K6	Protein SYM1	AT2G42770.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os01g53060.1	"peroxisomal membrane protein, putative, expressed"	Medtr4g108520.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.111679.1.S1_at	A	A1TS	POPTR_0001s20370	POPTR_0001s20370 (9)	scaffold_1:18256884-18257346(-) (9)	NA	Q8LPH6	Transcription factor MYB86	AT3G13890.2	myb domain protein 26 	LOC_Os01g51260.1	"MYB family transcription factor, putative, expressed"	Medtr2g120890.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111691.1.S1_at	A	A1TS	POPTR_0012s08570	POPTR_0012s08570 (11)	scaffold_12:9663130-9664187(-) (11)	NA	Q9FML2	Histone deacetylase 6	AT5G63110.1	histone deacetylase 6 	LOC_Os08g25570.1	"histone deacetylase, putative, expressed"	Medtr3g114600.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111712.1.S1_at	A	A1TS	POPTR_0008s14860	POPTR_0008s14860 (9)	scaffold_8:9874052-9875432(-) (9)	NA	Q4TU14	E3 ubiquitin-protein ligase RHF1A	AT4G14220.1	RING-H2 group F1A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111716.1.S1_at	A	A1TS	POPTR_0006s07650	POPTR_0006s07650 (9)	scaffold_6:5577460-5577723(-) (9)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.111718.1.S1_at	A	A1TS	POPTR_0006s13630	POPTR_0006s13630 (10)	scaffold_6:10830622-10832313(+) (10)	NA	NA	NA	AT5G02770.1	unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). 	LOC_Os03g17490.2	expressed protein	AC235022_12.1	hypothetical protein AC235022.1 78747-76265 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111722.1.S1_at	A	A1TS	POPTR_0007s14230	POPTR_0007s14230 (11)	scaffold_7:14070904-14071476(-) (11)	NA	Q6SZ87	Nucleobase-ascorbate transporter 11	AT4G38050.1	Xanthine/uracil permease family protein 	LOC_Os07g30810.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr5g033390.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.111752.1.S1_at	A	A1MS	POPTR_0010s13010	POPTR_0010s13010 (9)	scaffold_10:12924937-12925051(+) (9)	NA	NA	NA	AT2G01220.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g49670.1	"cytidylyltransferase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111781.1.S1_at	A	A1TS	POPTR_0002s09960	POPTR_0002s09960 (11)	scaffold_2:7150182-7151047(+) (11)	NA	Q9M9E8	F-box protein At1g78280	AT1G78280.1	"transferases, transferring glycosyl groups "	LOC_Os03g27250.1	"OsFBO14 - F-box and other domain containing protein, expressed"	Medtr3g150440.1	"Transcription factor jumonji, jmjC; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111782.1.S1_at	A	A1TS	POPTR_0002s17860	POPTR_0002s17860 (10)	scaffold_2:13681778-13681989(+) (10)	NA	Q9MAM3	3-ketoacyl-CoA synthase 1	AT1G01120.1	3-ketoacyl-CoA synthase 1 	LOC_Os03g14170.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr7g146040.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.111828.1.S1_s_at	A	A1TS	POPTR_0012s14920	POPTR_0012s14920 (11)	scaffold_12:14626824-14627231(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.111833.1.S1_s_at	A	A1TS	POPTR_0015s01320	POPTR_0015s01320 (11)	scaffold_15:821770-822961(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT5G53080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr3g123620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111842.1.A1_s_at	A	A2TS	POPTR_0010s14860	POPTR_0010s14860 (11)//POPTR_0006s13760 (10)	scaffold_10:14330686-14334430(+) (11)//scaffold_6:10981698-10985573(-) (9)	NA	Q6CBH3	"Probable hexaprenyl pyrophosphate synthase, mitochondrial"	AT2G34630.2	geranyl diphosphate synthase 1 	LOC_Os06g46450.1	"polyprenyl synthetase, putative, expressed"	Medtr5g019360.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.11185.1.A1_s_at	A	A1TS	POPTR_0002s11320	POPTR_0002s11320 (11)	scaffold_2:8371925-8372285(+) (11)	NA	NA	NA	AT1G10020.1	Protein of unknown function (DUF1005) 	LOC_Os07g04150.1	"stress-induced protein, putative, expressed"	Medtr5g005600.1	Protein of unknown function DUF1005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111856.1.S1_at	A	A1TS	POPTR_0010s06330	POPTR_0010s06330 (11)	scaffold_10:7727697-7728234(+) (11)	NA	O64511	Protein TWIN LOV 1	AT2G02710.2	PAS/LOV protein B 	LOC_Os01g09120.1	"Twin LOV 1, putative, expressed"	Medtr5g039450.1	PAS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	NA
PtpAffx.111861.1.S1_s_at	A	A1TS	POPTR_0005s10270	POPTR_0005s10270 (11)	scaffold_5:7354268-7355355(+) (11)	NA	Q8W2B8	Serine acetyltransferase 4	AT4G35640.1	serine acetyltransferase 3;2 	LOC_Os03g04140.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g023630.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
PtpAffx.111863.1.S1_at	A	A1TS	POPTR_0002s11860	POPTR_0002s11860 (10)	scaffold_2:8798314-8799725(-) (10)	NA	Q5XIF3	"NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial"	AT5G67590.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os07g39710.1	"NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed"	Medtr8g101670.1	ETC complex I subunit conserved region 	GO:0022900|electron transport chain	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH"""	GO:0005743|mitochondrial inner membrane
PtpAffx.111866.1.S1_at	A	A1TS	POPTR_0013s09320	POPTR_0013s09320 (9)	scaffold_1298:5166-5259(-) (11)//scaffold_13:8983693-8983777(-) (9)	NA	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111871.1.S1_a_at	A	A2TS	POPTR_0006s05960	POPTR_0006s05960 (11)//POPTR_0018s12390 (11)	scaffold_18:12880482-12880776(+) (11)//scaffold_6:4215334-4216110(+) (11)	NA	NA	NA	AT2G12400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os02g55590.3	expressed protein	Medtr8g122370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111871.1.S1_at	A	A1TS	POPTR_0006s05960	POPTR_0006s05960 (10)	scaffold_6:4215323-4216457(+) (10)	NA	NA	NA	AT2G12400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os02g55590.3	expressed protein	Medtr8g122370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111871.2.S1_at	A	A1TS	POPTR_0018s12390	POPTR_0018s12390 (11)	scaffold_18:12880122-12880964(+) (11)	NA	NA	NA	AT2G12400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111878.1.A1_at	A	A1TS	POPTR_0010s10910	POPTR_0010s10910 (11)	scaffold_10:11285014-11285518(-) (11)	NA	Q5REY7	UBX domain-containing protein 7	AT1G14570.1	UBX domain-containing protein 	LOC_Os04g57520.1	"UBX domain-containing protein, putative, expressed"	AC229689_1.1	UBX; UAS; Thioredoxin-like fold AC229689.5 4995-12311 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111899.1.S1_at	A	A1TS	POPTR_0016s04960	POPTR_0016s04960 (11)	scaffold_16:2997405-2997928(+) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT3G57880.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr7g111440.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111902.1.S1_at	A	A1TS	POPTR_0001s25020	POPTR_0001s25020 (11)	scaffold_1:24287473-24287885(+) (11)	NA	Q9ZW06	Pumilio homolog 2	AT2G29190.2	pumilio 2 	LOC_Os01g62650.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr4g084270.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.111903.1.S1_at	A	A1TS	POPTR_0017s06170	POPTR_0017s06170 (11)	scaffold_17:4787888-4788610(+) (11)	NA	P41252	"Isoleucyl-tRNA synthetase, cytoplasmic"	AT4G10320.1	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os06g43760.1	"tRNA synthetase class I, putative, expressed"	Medtr4g104390.1	"Aminoacyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.111903.2.S1_at	A	A1TS	POPTR_0005s22660	POPTR_0005s22660 (10)	scaffold_5:21573919-21574348(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111913.1.A1_at	A	A1TS	POPTR_0008s21121	POPTR_0008s21121 (10)	scaffold_8:15284483-15285024(+) (11)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os06g42640.3	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.111967.1.S1_at	A	A1TS	POPTR_0013s02680	POPTR_0013s02680 (11)	scaffold_13:1618969-1619594(+) (11)	NA	Q9C7T4	Transcription factor bHLH96	AT1G72210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g08930.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr1g099080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.111967.2.A1_s_at	A	A1TS	POPTR_0005s04160	POPTR_0005s04160 (11)	scaffold_5:2765883-2766243(-) (11)	NA	Q9C7T4	Transcription factor bHLH96	AT1G72210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g08930.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr1g099080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.11198.1.A1_at	A	A1TS	POPTR_0009s16020	POPTR_0009s16020 (10)	scaffold_9:12267320-12267597(-) (10)	NA	Q9ZVD0	Serrate RNA effector molecule	AT2G27100.1	C2H2 zinc-finger protein SERRATE (SE) 	LOC_Os06g48530.1	"ZOS6-09 - C2H2 zinc finger protein, expressed"	Medtr8g047770.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1120.1.S1_at	A	A1TS	POPTR_0004s18000	POPTR_0004s18000 (11)	scaffold_4:18020245-18020404(+) (11)	NA	O24030	Proteasome subunit alpha type-7	AT5G66140.1	proteasome alpha subunit D2 	LOC_Os08g43540.1	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.11200.1.A1_at	A	A1TS	POPTR_0002s07700	POPTR_0002s07700 (11)	scaffold_2:5281053-5281484(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112006.1.S1_at	A	A1TS	POPTR_0001s25530	POPTR_0001s25530 (11)	scaffold_1:24612320-24612472(-) (11)	NA	Q66GI9	"Probable anion transporter 4, chloroplastic"	AT3G46980.3	phosphate transporter 4;3 	LOC_Os01g63290.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112006.1.S1_s_at	A	A1TS	POPTR_0001s25530	POPTR_0001s25530 (11)	scaffold_1:24612110-24612313(-) (11)	NA	Q66GI9	"Probable anion transporter 4, chloroplastic"	AT3G46980.3	phosphate transporter 4;3 	LOC_Os01g63290.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112024.1.S1_at	A	A1MS	POPTR_0013s02940	POPTR_0013s02940 (10)	scaffold_13:1780694-1781668(+) (10)	NA	Q8CCN5	Breast carcinoma-amplified sequence 3 homolog	AT1G54710.1	homolog of yeast autophagy 18 (ATG18) H 	LOC_Os05g33610.2	expressed protein	Medtr1g098850.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11205.1.A1_s_at	A	A1TS	POPTR_0004s00720	POPTR_0004s00720 (11)	scaffold_4:306802-307003(+) (11)	NA	P12617	"Malonyl-CoA decarboxylase, mitochondrial"	AT4G04320.1	malonyl-CoA decarboxylase family protein 	LOC_Os09g23070.1	"malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0050080|malonyl-CoA decarboxylase activity	NA
PtpAffx.112078.1.A1_at	A	A1TA	POPTR_0018s11860	POPTR_0018s11860 (11)	scaffold_18:12523752-12524142(-) (11)	NA	NA	NA	AT5G58040.1	homolog of yeast FIP1 [V] 	LOC_Os03g51520.2	"fip1 motif family protein, expressed"	Medtr8g137570.1	Fip1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11208.1.A1_at	A	A1TS	POPTR_0018s03450	POPTR_0018s03450 (11)	scaffold_18:3033269-3034924(+) (11)	NA	Q9SV15	Probable WRKY transcription factor 11	AT4G31550.2	WRKY DNA-binding protein 11 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g010400.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.112109.1.S1_at	A	A1TS	POPTR_0012s11820	POPTR_0012s11820 (10)	scaffold_12:12197391-12198441(-) (10)	NA	NA	NA	AT2G35640.1	Homeodomain-like superfamily protein 	LOC_Os04g57530.1	"transcription factor, putative, expressed"	Medtr7g020740.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112163.1.S1_at	A	A1TS	POPTR_0013s12160	POPTR_0013s12160 (11)	scaffold_13:12804467-12805136(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112170.1.S1_at	A	A1TS	POPTR_0001s38950	POPTR_0001s38950 (9)	scaffold_1:38197004-38197464(-) (9)	NA	P72580	Prenyl transferase	AT1G78510.1	solanesyl diphosphate synthase 1 	LOC_Os05g50550.1	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.112172.1.S1_at	A	A1TS	POPTR_0002s15890	POPTR_0002s15890 (11)	scaffold_2:11840928-11841833(+) (11)	NA	Q8RXK6	DEAD-box ATP-dependent RNA helicase 8	AT4G00660.1	RNAhelicase-like 8 	LOC_Os04g45040.3	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g084670.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.112172.1.S1_s_at	A	A2TS	POPTR_0002s15890	POPTR_0014s07690 (11)//POPTR_0002s15890 (11)	scaffold_14:5759503-5761098(+) (11)//scaffold_2:11841698-11842454(+) (11)	NA	Q8RXK6	DEAD-box ATP-dependent RNA helicase 8	AT4G00660.1	RNAhelicase-like 8 	LOC_Os04g45040.3	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g084670.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.1122.1.S1_a_at	A	A1TS	POPTR_0004s04550	POPTR_0004s04550 (11)	scaffold_4:3292619-3292931(-) (11)	POPTR_0011s05370 (7)	P93014	"30S ribosomal protein S5, chloroplastic"	AT2G33800.1	Ribosomal protein S5 family protein 	LOC_Os03g34040.1	"ribosomal protein, putative, expressed"	Medtr4g142760.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.1122.3.S1_a_at	A	A1TS	POPTR_0009s06540	POPTR_0009s06540 (11)	scaffold_9:6295569-6295941(-) (11)	NA	Q9LXV5	Nuclear transcription factor Y subunit A-1	AT5G12840.4	"nuclear factor Y, subunit A1 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.1122.4.S1_at	A	A1TS	POPTR_0009s06540	POPTR_0009s06540 (11)	scaffold_9:6295765-6296059(-) (11)	NA	Q9LXV5	Nuclear transcription factor Y subunit A-1	AT5G12840.4	"nuclear factor Y, subunit A1 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11220.1.S1_s_at	A	A1TS	POPTR_0014s03580	POPTR_0014s03580 (11)	scaffold_14:2864833-2865053(+) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os12g30040.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr2g014200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112201.1.S1_at	A	A1TS	POPTR_0005s05130	POPTR_0005s05130 (11)	scaffold_5:3409124-3409533(+) (11)	NA	NA	NA	AT1G54520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). 	LOC_Os03g48920.1	"DUF1517 domain containing protein, putative, expressed"	Medtr7g140520.1	Protein of unknown function DUF1517 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112226.1.S1_at	A	A1TS	POPTR_0003s12490	POPTR_0003s12490 (11)	scaffold_3:13045112-13045726(-) (11)	POPTR_0001s09130 (6)	C0LGH8	Probable LRR receptor-like serine/threonine-protein kinase At1g63430	AT1G63430.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g58700.1	expressed protein	Medtr5g010570.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112232.1.S1_at	A	A1TS	POPTR_0018s02000	POPTR_0018s02000 (11)	scaffold_18:1804104-1804246(+) (11)	NA	Q03730	Uncharacterized vacuolar membrane protein YML018C	AT4G32140.1	EamA-like transporter family 	LOC_Os04g55260.1	"thiamine-repressible mitochondrial transport protein THI74, putative, expressed"	Medtr7g064590.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112241.1.S1_at	A	A1MS	POPTR_0018s08920	POPTR_0018s08920 (9)	scaffold_18:9830380-9831116(-) (9)	NA	Q5JMF2	Probable protein ABIL5	AT3G49290.2	ABL interactor-like protein 2 	LOC_Os01g55560.1	"ABIL3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112242.1.S1_s_at	A	A1TS	POPTR_0006s09160	POPTR_0006s09160 (11)	scaffold_6:6767057-6768647(+) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os01g62870.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.112256.1.S1_at	A	A1TS	POPTR_0018s05850	POPTR_0018s05850 (11)	scaffold_18:5474029-5475759(-) (11)	NA	P31583	Ras-related protein RHN1	AT5G45130.1	RAB homolog 1 	LOC_Os06g47260.2	"ras-related protein, putative, expressed"	Medtr4g158780.1	"Ras small GTPase, Rab type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11226.1.S1_at	A	A1TS	POPTR_0015s05300	POPTR_0015s05300 (9)	scaffold_15:5666885-5668142(+) (9)	NA	Q9C9X3	Annexin D5	AT1G68090.1	annexin 5 	LOC_Os09g23160.1	"annexin, putative, expressed"	Medtr4g154520.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.11228.1.S1_a_at	A	A1TS	POPTR_0006s20190	POPTR_0006s20190 (11)	scaffold_6:19246320-19246443(+) (11)	NA	Q9ZRD6	VAMP-like protein YKT61	AT5G58060.1	SNARE-like superfamily protein 	LOC_Os01g73300.1	"VAMP-like protein YKT62, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.11228.2.S1_at	A	A1TS	POPTR_0006s20190	POPTR_0006s20190 (11)	scaffold_6:19246436-19246785(+) (11)	NA	Q9ZRD6	VAMP-like protein YKT61	AT5G58060.1	SNARE-like superfamily protein 	LOC_Os01g73300.1	"VAMP-like protein YKT62, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.112286.1.A1_at	A	A2TA	POPTR_0016s03150	POPTR_0016s03150 (11)//POPTR_0016s03160 (9)	scaffold_16:1597547-1597888(-) (11)//scaffold_16:1606312-1606585(-) (9)	NA	O81117	Cytochrome P450 94A1	AT3G56630.1	"cytochrome P450, family 94, subfamily D, polypeptide 2 "	LOC_Os01g58960.1	"cytochrome P450, putative, expressed"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.112286.1.S1_at	A	A1TS	POPTR_0016s03150	POPTR_0016s03150 (9)	scaffold_16:1597480-1597887(+) (9)	POPTR_0016s03160 (8)	O81117	Cytochrome P450 94A1	AT3G56630.1	"cytochrome P450, family 94, subfamily D, polypeptide 2 "	LOC_Os01g58960.1	"cytochrome P450, putative, expressed"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.112287.1.S1_at	A	A1TS	POPTR_0006s17960	POPTR_0006s17960 (11)	scaffold_6:16250679-16251481(-) (11)	NA	Q03194	Plasma membrane ATPase 4	AT4G30190.1	H(+)-ATPase 2 	LOC_Os04g56160.3	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.112304.1.A1_at	A	A1TS	POPTR_0012s01640	POPTR_0012s01640 (11)	scaffold_12:1250667-1251502(+) (11)	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11231.1.S1_at	A	A1TS	POPTR_0018s13200	POPTR_0018s13200 (11)	scaffold_18:13611839-13613392(-) (11)	NA	Q10E50	Phospholipase A2 homolog 3	AT2G06925.1	Phospholipase A2 family protein 	LOC_Os03g50030.1	"phospholipase A2, putative, expressed"	Medtr6g092420.1	Phospholipase A2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112322.1.S1_at	A	A1MS	POPTR_0002s20690	POPTR_0002s20690 (10)	scaffold_2:16763687-16764126(+) (10)	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112322.3.S1_a_at	A	A1TS	POPTR_0002s20690	POPTR_0002s20690 (11)	scaffold_2:16765083-16765202(+) (11)	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112323.1.S1_at	A	A1TS	POPTR_0010s23910	POPTR_0010s23910 (11)	scaffold_10:20360418-20361738(+) (11)	NA	Q4V3C8	3-phosphoinositide-dependent protein kinase 2	AT3G10540.1	3-phosphoinositide-dependent protein kinase 	LOC_Os01g65230.1	"AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g139660.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11233.1.S1_a_at	A	A1TS	POPTR_0012s03590	POPTR_0012s03590 (11)	scaffold_12:2825317-2826130(+) (11)	NA	Q3ZBN8	Mitochondrial import inner membrane translocase subunit TIM14	AT2G35795.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g09450.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.112344.1.S1_at	A	A1TS	POPTR_0009s13860	POPTR_0009s13860 (10)	scaffold_9:10957532-10957989(-) (10)	NA	Q9ZVX2	Transcription factor ABORTED MICROSPORES	AT2G16910.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02820.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g096910.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.112345.1.S1_at	A	A1TS	POPTR_0002s06010	POPTR_0002s06010 (11)	scaffold_2:4007211-4007424(-) (11)	NA	Q9SVV6	Probable calcium-activated outward-rectifying potassium channel 6	AT4G18160.1	Ca2+ activated outward rectifying K+ channel 6 	LOC_Os09g12790.1	"potassium channel protein, putative, expressed"	Medtr7g134030.1	Ion transport 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112347.1.S1_at	A	A1TS	POPTR_0015s07290	POPTR_0015s07290 (10)	scaffold_15:8436006-8436332(-) (10)//scaffold_1558:4556-4883(+) (11)	NA	Q9LF80	Putative glycosyltransferase 3	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g32750.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
PtpAffx.112350.1.S1_at	A	A1TS	POPTR_0012s07180	POPTR_0012s07180 (11)	scaffold_12:7958465-7958830(+) (11)	NA	Q9ZPC0	"Isochorismate synthase, chloroplastic"	AT1G18870.1	isochorismate synthase 2 	LOC_Os09g19734.1	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr4g104110.1	Anthranilate synthase component I and chorismate binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112351.1.S1_at	A	A1MS	POPTR_0012s05870	POPTR_0012s05870 (11)	scaffold_12:5721449-5721791(-) (11)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT5G61030.1	glycine-rich RNA-binding protein 3 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g036670.1	"Carbohydrate kinase, PfkB; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.112380.1.S1_s_at	A	A2TS	POPTR_0002s09410	POPTR_0002s09410 (11)//POPTR_0005s16630 (11)	scaffold_2:6704090-6704490(-) (11)//scaffold_5:13614212-13614612(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112384.1.S1_s_at	A	A1TS	POPTR_0018s10300	POPTR_0018s10300 (11)	scaffold_18:11240542-11240762(-) (11)	NA	Q38857	Xyloglucan endotransglucosylase/hydrolase protein 22	AT5G57560.1	Xyloglucan endotransglucosylase/hydrolase family protein 	LOC_Os06g48180.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.11239.1.S1_s_at	A	A1TS	POPTR_0009s10270	POPTR_0009s10270 (11)	scaffold_9:8858424-8859010(-) (11)	NA	O65862	Caffeoyl-CoA O-methyltransferase 1	AT4G34050.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.112392.1.S1_at	A	A1TS	POPTR_0003s20440	POPTR_0003s20440 (10)	scaffold_3:18937239-18937604(-) (10)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.112394.1.S1_at	A	A1TS	POPTR_0016s14610	POPTR_0016s14610 (10)	scaffold_16:13781460-13782160(-) (10)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g60330.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g083650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.112412.1.S1_at	A	A1TS	POPTR_0010s15000	POPTR_0010s15000 (11)	scaffold_10:14409372-14409993(-) (11)	NA	P78316	Nucleolar protein 14	AT1G69070.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). 	LOC_Os03g40110.1	"nop14-like family protein, expressed"	Medtr1g043170.1	Nop14-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112415.1.S1_at	A	A1TS	POPTR_0008s03960	POPTR_0008s03960 (9)	scaffold_8:2184247-2184749(-) (9)	NA	NA	NA	AT1G13810.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os08g13890.1	"exonuclease, putative, expressed"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112420.1.S1_at	A	A1TS	POPTR_0009s01470	POPTR_0009s01470 (11)	scaffold_9:1808359-1809794(-) (11)	NA	P08926	"RuBisCO large subunit-binding protein subunit alpha, chloroplastic"	AT2G28000.1	chaperonin-60alpha 	LOC_Os12g17910.1	"T-complex protein, putative, expressed"	AC233663_8.1	Chaperonin Cpn60 AC233663.2 79149-81923 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.112424.1.S1_s_at	A	A1TS	POPTR_0001s24940	POPTR_0001s24940 (11)	scaffold_1:24203921-24204392(-) (11)	NA	O81077	Abscisic acid 8'-hydroxylase 2	AT2G29090.2	"cytochrome P450, family 707, subfamily A, polypeptide 2 "	LOC_Os02g47470.1	"cytochrome P450, putative, expressed"	Medtr5g025670.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.11243.1.S1_at	A	A1TS	POPTR_0007s12430	POPTR_0007s12430 (9)	scaffold_7:12731022-12732658(-) (10)	NA	Q6P1B1	Xaa-Pro aminopeptidase 1	AT4G36760.1	aminopeptidase P1 	LOC_Os06g45360.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g019520.1	Creatinase; Peptidase M24 	GO:0009987|cellular process	GO:0016787|hydrolase activity	NA
PtpAffx.112432.1.S1_at	A	A1TS	POPTR_0011s13990	POPTR_0011s13990 (10)	scaffold_11:16592490-16593078(+) (10)	POPTR_0001s44710 (6)	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT4G27060.1	ARM repeat superfamily protein 	LOC_Os07g33630.1	"HEAT repeat family protein, putative, expressed"	Medtr3g067150.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112471.1.S1_at	A	A1MA	POPTR_0001s05550	POPTR_0001s05550 (9)	scaffold_1:4261824-4262532(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112472.1.S1_s_at	A	A1TS	POPTR_0002s16990	POPTR_0002s16990 (11)	scaffold_2:12752940-12753235(-) (11)	NA	NA	NA	AT3G58800.1	unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g54440.1	expressed protein	Medtr5g099080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11250.1.S1_at	A	A1TS	POPTR_0002s15700	POPTR_0002s15700 (11)	scaffold_2:11724205-11725204(+) (11)	NA	Q9C8S6	C2 domain-containing protein At1g63220	AT1G63220.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os04g44870.1	"C2 domain containing protein, putative, expressed"	Medtr8g034330.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112519.1.S1_s_at	A	A1TS	POPTR_0019s13050	POPTR_0019s13050 (11)	scaffold_19:14060816-14060938(+) (11)	NA	NA	NA	AT5G10460.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g42950.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr4g128280.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.112537.1.S1_at	A	A1TS	POPTR_0014s15990	POPTR_0014s15990 (9)	scaffold_14:12071769-12072350(+) (9)	NA	A7SLC8	N-acetyltransferase 9-like protein	AT2G04845.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g09860.2	"acetyltransferase, GNAT family, putative, expressed"	Medtr3g106050.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.112555.1.S1_at	A	A1TS	POPTR_0008s12500	POPTR_0008s12500 (9)	scaffold_8:8093756-8095804(+) (9)	NA	Q9BVG9	Phosphatidylserine synthase 2	AT1G15110.1	phosphatidyl serine synthase family protein 	LOC_Os01g02890.1	"phosphatidylserine synthase, putative"	NA	NA	GO:0006659|phosphatidylserine biosynthetic process	NA	NA
PtpAffx.112555.2.S1_s_at	A	A1TS	POPTR_0010s12770	POPTR_0010s12770 (11)	scaffold_10:12724035-12727912(-) (11)	POPTR_0008s12500 (6)	Q9BVG9	Phosphatidylserine synthase 2	AT1G15110.1	phosphatidyl serine synthase family protein 	LOC_Os01g02890.1	"phosphatidylserine synthase, putative"	NA	NA	GO:0006659|phosphatidylserine biosynthetic process	NA	NA
PtpAffx.11257.1.A1_at	A	A1TS	POPTR_0009s06400	POPTR_0009s06400 (11)	scaffold_9:6194035-6194559(+) (11)	NA	NA	NA	AT3G52070.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g11780.1	expressed protein	Medtr4g049880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112582.1.A1_at	A	A1MS	POPTR_0005s19190	POPTR_0005s19190 (10)	scaffold_5:17805065-17805483(-) (10)	NA	NA	NA	AT1G43130.1	like COV 2 	LOC_Os01g64780.2	"COV1, putative, expressed"	Medtr3g144480.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112583.1.A1_at	A	A1MS	POPTR_0008s16540	POPTR_0008s16540 (11)	scaffold_8:11108815-11109258(+) (11)	NA	Q8L7R5	UPF0497 membrane protein At3g23200	AT3G23200.1	Uncharacterised protein family (UPF0497) 	LOC_Os09g07480.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g018930.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1126.1.A1_at	A	A1TS	POPTR_0013s04660	POPTR_0013s04660 (11)	scaffold_13:3207183-3207286(+) (11)	NA	P46976	Glycogenin-1	AT5G18480.1	plant glycogenin-like starch initiation protein 6 	LOC_Os02g41520.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g093950.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.1126.2.S1_at	A	A1TS	POPTR_0007s11880	POPTR_0007s11880 (11)	scaffold_7:12238290-12238391(-) (11)	NA	Q8VZB9	60S ribosomal protein L10a-1	AT1G08360.1	Ribosomal protein L1p/L10e family 	LOC_Os01g64090.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.1126.3.A1_at	A	A1TS	POPTR_0004s21290	POPTR_0004s21290 (11)	scaffold_1265:3921-4209(+) (9)//scaffold_4:20480251-20480824(-) (11)	NA	Q8VZB9	60S ribosomal protein L10a-1	AT1G08360.1	Ribosomal protein L1p/L10e family 	LOC_Os01g64090.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.112604.1.A1_at	A	A1TS	POPTR_0012s04500	POPTR_0012s04500 (11)	scaffold_12:3787478-3788007(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.112619.1.A1_at	A	A1TS	POPTR_0011s10800	POPTR_0011s10800 (11)	scaffold_11:13386448-13387670(+) (11)	NA	Q9URW6	SH3 domain-containing protein PJ696.02	AT1G29800.2	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os02g13890.1	"FYVE zinc finger domain containing protein, expressed"	Medtr2g021650.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11262.1.A1_at	A	A1TS	POPTR_0012s07540	POPTR_0012s07540 (9)	scaffold_12:8462756-8463349(+) (9)	NA	Q6P2B1	Transportin-3	AT5G62600.1	ARM repeat superfamily protein 	LOC_Os10g33770.1	importin-beta N-terminal domain containing protein	AC233677_6.1	Exportin-1/Importin-beta-like AC233677.2 40883-35967 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.112626.1.A1_s_at	A	A1TS	POPTR_0005s16630	POPTR_0005s16630 (11)	scaffold_5:13611392-13611434(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112651.1.A1_at	A	A1TS	POPTR_0006s21580	POPTR_0006s21580 (9)	scaffold_6:20630479-20631131(+) (9)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11267.1.S1_at	A	A1TS	POPTR_0001s21690	POPTR_0001s21690 (11)	scaffold_1:20236937-20238675(+) (11)	NA	Q9LU85	"Probable plastid-lipid-associated protein 4, chloroplastic"	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os03g49720.1	"PAP fibrillin family domain containing protein, expressed"	Medtr2g007410.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.112675.1.A1_at	A	A1TS	POPTR_0010s26050	POPTR_0010s26050 (9)	scaffold_10:21431284-21431755(-) (9)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os02g41910.1	"OsFBO12 - F-box and other domain containing protein, expressed"	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11269.1.S1_at	A	A1TS	POPTR_0001s38280	POPTR_0001s38280 (11)	scaffold_1:37375020-37375414(+) (11)	NA	NA	NA	AT3G15070.2	RING/U-box superfamily protein 	LOC_Os01g47740.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g092000.1	"zinc finger protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11269.2.S1_at	A	A1TS	POPTR_0011s09950	POPTR_0011s09950 (11)	scaffold_11:12396119-12396820(-) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT1G53190.2	RING/U-box superfamily protein 	LOC_Os01g47740.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g092080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1127.1.S1_s_at	A	A2TS	POPTR_0008s07800	POPTR_0010s18570 (11)//POPTR_0008s07800 (11)	scaffold_10:16775440-16776619(+) (11)//scaffold_8:4807090-4808334(-) (11)	NA	Q5ZK33	"LETM1 and EF-hand domain-containing protein 1, mitochondrial"	AT1G65540.1	LETM1-like protein 	LOC_Os04g41950.1	"calcium-binding mitochondrial protein anon-60Da, putative, expressed"	Medtr7g090240.1	LETM1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11271.1.S1_a_at	A	A1TS	POPTR_0010s02820	POPTR_0010s02820 (10)	scaffold_10:3302928-3304328(-) (10)	NA	NA	NA	AT4G15545.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g33620.1	expressed protein	Medtr8g139920.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112731.1.A1_at	A	A1TS	POPTR_0001s20870	POPTR_0001s20870 (11)	scaffold_1:19110247-19111517(-) (11)	NA	NA	NA	AT1G52510.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os04g55180.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr4g005710.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112742.1.A1_at	A	A1TS	POPTR_0002s08180	POPTR_0002s08180 (9)	scaffold_2:5677892-5677985(+) (9)	NA	Q6S001	Kinesin-related protein 11	AT1G21730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53520.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g112390.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.112745.1.A1_at	A	A1TS	POPTR_0002s10080	POPTR_0002s10080 (9)	scaffold_2:7245106-7245495(-) (9)	NA	Q940J1	Homeobox-leucine zipper protein ATHB-16	AT4G40060.1	homeobox protein 16 	LOC_Os08g37580.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g110250.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.112746.1.A1_at	A	A1TS	POPTR_0007s12760	POPTR_0007s12760 (11)	scaffold_7:13025259-13025794(+) (11)	NA	Q9FL03	Scarecrow-like protein 4	AT5G66770.1	GRAS family transcription factor 	LOC_Os03g51330.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g107060.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11275.1.A1_a_at	A	A1TS	POPTR_0007s07800	POPTR_0007s07800 (11)	scaffold_7:6222518-6223129(-) (11)	NA	Q5M9F1	RNA-binding protein 34	AT3G18610.1	nucleolin like 2 	LOC_Os04g52960.1	"nucleolin, putative, expressed"	Medtr4g101170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.112753.1.A1_s_at	A	A1TS	POPTR_0001s11390	POPTR_0001s11390 (11)	scaffold_1:8850329-8850808(+) (11)	NA	NA	NA	AT1G14430.1	glyoxal oxidase-related protein 	LOC_Os03g15320.1	"glyoxal oxidase-related, putative, expressed"	Medtr1g028280.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112783.1.S1_s_at	A	A1TS	POPTR_0019s10360	POPTR_0019s10360 (11)	scaffold_19:11923252-11926007(-) (11)	NA	Q2TAP9	Abhydrolase domain-containing protein 11	AT4G10030.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g66240.1	"mitochondrion protein, putative, expressed"	Medtr5g008770.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112784.1.A1_at	A	A1MS	POPTR_0010s06070	POPTR_0010s06070 (11)	scaffold_10:7498708-7499171(-) (11)	NA	Q8YTC2	Uncharacterized WD repeat-containing protein alr2800	AT1G24530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g50740.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g037080.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112794.1.A1_at	A	A1TS	POPTR_0014s01950	POPTR_0014s01950 (11)	scaffold_14:1747461-1747986(-) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112858.1.A1_at	A	A1TS	POPTR_0016s06200	POPTR_0016s06200 (11)	scaffold_16:4146620-4147127(-) (11)	NA	Q9P6N5	Dihydrosphingosine 1-phosphate phosphatase C823.11	AT3G58490.1	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os03g59070.1	"phosphatase, putative, expressed"	AC235488_22.2	"Phosphoesterase, PA-phosphatase related AC235488.1 98822-95448 F EGN_Mt090430 200"	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.112859.1.A1_s_at	A	A1TS	POPTR_0012s07620	POPTR_0012s07620 (11)	scaffold_12:8537597-8537812(+) (11)	NA	P34909	General negative regulator of transcription subunit 4	AT5G62910.1	RING/U-box superfamily protein 	LOC_Os02g37030.1	"protein binding protein, putative, expressed"	Medtr6g009590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112861.1.A1_at	A	A1MS	POPTR_0002s06750	POPTR_0002s06750 (10)	scaffold_2:4537512-4537904(-) (10)	NA	NA	NA	AT1G43580.1	Sphingomyelin synthetase family protein 	LOC_Os04g34620.1	expressed protein	Medtr1g125060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112867.1.A1_at	A	A1TS	POPTR_0008s05410	POPTR_0008s05410 (10)	scaffold_8:3136098-3136639(+) (10)	NA	P09189	Heat shock cognate 70 kDa protein	AT5G02500.1	heat shock cognate protein 70-1 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g025840.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112875.1.A1_at	A	A1TS	POPTR_0009s04980	POPTR_0009s04980 (10)	scaffold_9:5193618-5194004(+) (10)	NA	Q9FVN0	Ammonium transporter 1 member 3	AT4G13510.1	ammonium transporter 1;1 	LOC_Os04g43070.1	"ammonium transporter protein, putative, expressed"	Medtr1g065600.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.112899.1.A1_at	A	A1TS	POPTR_0013s06650	POPTR_0013s06650 (9)	scaffold_13:5330427-5331515(-) (9)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G33110.1	MATE efflux family protein 	LOC_Os12g03260.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.1129.1.A1_at	A	A1TS	POPTR_0019s06220	POPTR_0019s06220 (10)	scaffold_19:6834728-6835153(+) (10)	NA	P59287	"Casbene synthase, chloroplastic"	AT5G23960.1	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.112916.1.A1_at	A	A1TS	POPTR_0002s07060	POPTR_0002s07060 (11)	scaffold_2:4780550-4781094(+) (11)	NA	O49279	SKP1-interacting partner 15	AT1G76920.1	F-box family protein 	LOC_Os04g57290.1	"OsFBX153 - F-box domain containing protein, expressed"	Medtr7g015440.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112917.1.A1_a_at	A	A2TS	POPTR_0001s28620	POPTR_0009s07810 (11)//POPTR_0001s28620 (11)	scaffold_1:27385305-27385492(-) (11)//scaffold_9:7252766-7252953(-) (11)	NA	O64738	"Zinc transporter 6, chloroplastic"	AT2G30080.1	ZIP metal ion transporter family 	LOC_Os05g07210.1	"metal cation transporter, putative, expressed"	Medtr5g080290.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.112917.1.A1_at	A	A1TS	POPTR_0001s28620	POPTR_0001s28620 (9)	scaffold_1:27385133-27385502(-) (9)	NA	O64738	"Zinc transporter 6, chloroplastic"	AT2G30080.1	ZIP metal ion transporter family 	LOC_Os05g07210.1	"metal cation transporter, putative, expressed"	Medtr5g080290.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.112917.2.A1_at	A	A1TS	POPTR_0009s07810	POPTR_0009s07810 (11)	scaffold_9:7252605-7253839(-) (11)	NA	O64738	"Zinc transporter 6, chloroplastic"	AT2G30080.1	ZIP metal ion transporter family 	LOC_Os05g07210.1	"metal cation transporter, putative, expressed"	Medtr5g080290.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.112927.1.A1_at	A	A1TS	POPTR_0013s00410	POPTR_0013s00410 (9)	scaffold_13:170465-170912(+) (11)	POPTR_0005s00490 (8)	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os02g09900.1	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.112940.1.A1_at	A	A1TS	POPTR_0003s06520	POPTR_0003s06520 (9)	scaffold_3:8018813-8019178(+) (9)	NA	Q9SYG9	Cation/calcium exchanger 4	AT1G54115.1	cation calcium exchanger 4 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr8g025300.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.112959.1.S1_at	A	A1TS	POPTR_0003s21820	POPTR_0003s21820 (11)	scaffold_3:19835990-19836157(+) (11)	NA	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113001.1.S1_at	A	A1TS	POPTR_0006s16050	POPTR_0006s16050 (11)	scaffold_6:13871949-13874131(+) (11)	NA	Q9T0K7	3-hydroxyisobutyryl-CoA hydrolase-like protein 3	AT4G13360.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os06g39344.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr4g158540.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11307.1.A1_at	A	A1TS	POPTR_0012s06850	POPTR_0012s06850 (11)	scaffold_12:7347985-7348426(+) (11)	NA	Q9BY12	S phase cyclin A-associated protein in the endoplasmic reticulum	NA	NA	LOC_Os06g12876.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113074.1.S1_s_at	A	A1TS	POPTR_0010s17630	POPTR_0010s17630 (11)	scaffold_10:16140341-16140846(+) (11)	NA	NA	NA	AT2G02960.3	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os08g33860.2	"zinc finger, C3HC4 type, putative, expressed"	Medtr5g044040.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113098.1.S1_at	A	A1TS	POPTR_0001s22820	POPTR_0001s22820 (11)	scaffold_1:21701137-21701183(-) (11)	NA	A7RWD2	Probable cytosolic iron-sulfur protein assembly protein	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113098.1.S1_s_at	A	A1TS	POPTR_0001s22820	POPTR_0001s22820 (11)	scaffold_1:21700667-21701058(-) (11)	NA	A7RWD2	Probable cytosolic iron-sulfur protein assembly protein	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113124.1.S1_at	A	A1MS	POPTR_0001s28050	POPTR_0001s28050 (9)	scaffold_1:26859752-26859995(+) (9)	NA	Q8RY82	F-box protein At2g32560	AT2G32560.1	F-box family protein 	LOC_Os01g17390.1	"OsFBX5 - F-box domain containing protein, expressed"	Medtr5g096190.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113139.1.S1_at	A	A1TS	POPTR_0014s12450	POPTR_0014s12450 (11)	scaffold_14:9181222-9181729(+) (11)	NA	Q8LEA8	Phytochrome A-associated F-box protein	AT4G02440.1	F-box family protein 	LOC_Os05g30190.1	"phytochrome A-associated F-box protein, putative, expressed"	Medtr8g068260.1	"Phytochrome A-associated F-box protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11317.1.A1_x_at	A	A1TS	POPTR_0010s16640	POPTR_0010s16640 (11)	scaffold_10:15532803-15533230(-) (11)	NA	Q93V72	"Glucan endo-1,3-beta-glucosidase-like protein At1g69295"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11317.2.A1_a_at	A	A1TS	POPTR_0010s16640	POPTR_0010s16640 (11)	scaffold_10:15532888-15533358(-) (11)	NA	Q93V72	"Glucan endo-1,3-beta-glucosidase-like protein At1g69295"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11317.6.A1_a_at	A	A1TS	POPTR_0010s16640	POPTR_0010s16640 (11)	scaffold_10:15532803-15534959(-) (11)	NA	Q93V72	"Glucan endo-1,3-beta-glucosidase-like protein At1g69295"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11319.1.A1_at	A	A1TS	POPTR_0008s15560	POPTR_0008s15560 (11)	scaffold_8:10340734-10341173(+) (11)	NA	Q9LUJ3	Protein RDM1	AT3G22680.1	RNA-DIRECTED DNA METHYLATION 1 	LOC_Os06g42430.3	expressed protein	Medtr5g006750.1	Protein of unknown function DUF1950 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113201.1.S1_at	A	A1TS	POPTR_0006s12180	POPTR_0006s12180 (9)	scaffold_6:9323610-9324414(-) (9)	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G36720.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113202.1.S1_at	A	A1TS	POPTR_0007s09360	POPTR_0007s09360 (11)	scaffold_7:8744643-8745132(-) (11)	NA	NA	NA	AT4G35730.1	Regulator of Vps4 activity in the MVB pathway protein 	NA	NA	Medtr8g088800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113217.1.S1_s_at	A	A1TS	POPTR_0018s02010	POPTR_0018s02010 (11)	scaffold_18:1808032-1808325(+) (11)	NA	Q8VY97	UPF0480 protein At4g32130	AT2G25310.1	Protein of unknown function (DUF2012) 	LOC_Os06g43650.2	"secreted salivary protein, putative, expressed"	Medtr3g137720.1	Carbohydrate-binding-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11322.1.A1_s_at	A	A1TS	POPTR_0008s15870	POPTR_0008s15870 (11)	scaffold_8:10592705-10593151(-) (11)	NA	NA	NA	AT4G00231.1	ARM repeat superfamily protein 	LOC_Os03g02720.1	expressed protein	Medtr7g083540.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113221.1.S1_s_at	A	A1TS	POPTR_0012s05590	POPTR_0012s05590 (11)	scaffold_12:5242993-5244279(-) (11)	NA	P41111	Translation initiation factor eIF-2B subunit delta	AT5G38640.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g44310.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.11324.1.A1_at	A	A1TS	POPTR_0018s08830	POPTR_0018s08830 (10)	scaffold_18:9752384-9752890(-) (10)	NA	Q54XX9	PXMP2/4 family protein 2	AT3G24570.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os01g12800.1	"peroxisomal membrane protein, putative, expressed"	Medtr1g009450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.113243.1.S1_at	A	A1TS	POPTR_0005s09860	POPTR_0005s09860 (10)	scaffold_5:6940875-6941965(-) (10)	NA	O04866	"Acetylornithine aminotransferase, mitochondrial"	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.113258.1.S1_at	A	A1TS	POPTR_0014s16200	POPTR_0014s16200 (11)	scaffold_14:12301964-12302517(-) (11)	NA	Q6ICW6	Probable serine/threonine-protein kinase WNK11	AT5G55560.1	Protein kinase superfamily protein 	LOC_Os07g39520.1	"STE_PAK_Ste20_Slob_Wnk.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g105230.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11326.1.A1_at	A	A1TS	POPTR_0011s06760	POPTR_0011s06760 (11)	scaffold_11:7421205-7421695(+) (11)	NA	NA	NA	AT1G29760.1	Putative adipose-regulatory protein (Seipin) 	LOC_Os09g36360.1	"protein of unknown function containing protein, expressed"	Medtr4g136210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113275.1.S1_at	A	A1TS	POPTR_0010s17350	POPTR_0010s17350 (11)	scaffold_10:15985877-15986131(+) (11)	NA	O49255	NAC domain-containing protein 29	AT1G69490.1	"NAC-like, activated by AP3/PI "	LOC_Os03g21060.1	"No apical meristem protein, putative, expressed"	Medtr5g045070.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.113282.1.A1_at	A	A1MS	POPTR_0001s32370	POPTR_0001s32370 (11)	scaffold_1:30731249-30731518(+) (11)	NA	Q6GL77	UBX domain-containing protein 1	AT1G04850.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os02g30180.1	"ZOS2-07 - C2H2 zinc finger protein, expressed"	Medtr4g133680.1	"Ubiquitin-associated; PUG; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113282.2.A1_at	A	A1TA	POPTR_0016s12180	POPTR_0016s12180 (11)	scaffold_16:11519779-11520172(-) (11)	NA	NA	NA	AT5G01260.2	Carbohydrate-binding-like fold 	LOC_Os05g37450.1	"starch binding domain containing protein, putative, expressed"	Medtr4g012900.1	"Glycoside hydrolase, starch-binding; "	GO:0005975|carbohydrate metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11331.3.S1_at	A	A1MS	POPTR_0008s06700	POPTR_0008s06700 (10)	scaffold_8:4011426-4011885(-) (10)	NA	P59234	Protein yippee-like	AT2G40110.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g093410.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113361.1.S1_at	A	A1TS	POPTR_0019s08750	POPTR_0019s08750 (11)	scaffold_19:10289660-10290714(+) (11)	NA	Q8YZS3	UPF0176 protein all0384	AT2G40760.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os05g25780.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr5g076610.1	Rhodanese-like; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113385.1.S1_at	A	A1TS	POPTR_0005s27790	POPTR_0005s27790 (11)	scaffold_5:25286393-25287334(-) (11)	NA	NA	NA	AT2G33620.4	AT hook motif DNA-binding family protein 	LOC_Os08g40150.2	"AT hook motif domain containing protein, expressed"	Medtr8g102740.1	Protein of unknown function DUF296 	NA	GO:0003677|DNA binding	NA
PtpAffx.113478.1.S1_s_at	A	A1TS	POPTR_0018s10340	POPTR_0018s10340 (11)	scaffold_18:11265092-11266875(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.1	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113508.1.S1_at	A	A1TS	POPTR_0012s09630	POPTR_0012s09630 (11)	scaffold_12:10600266-10600540(+) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11351.1.A1_at	A	A1TA	POPTR_0010s21680	POPTR_0010s21680 (10)	scaffold_10:18871471-18871845(+) (10)	NA	P41891	Protein gar2	AT3G55340.1	phragmoplastin interacting protein 1 	LOC_Os05g02400.1	"RNA recognition motif containing protein, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.113518.1.S1_at	A	A1TS	POPTR_0003s06820	POPTR_0003s06820 (10)	scaffold_3:8359860-8361254(-) (10)	NA	NA	NA	AT1G54070.1	Dormancy/auxin associated family protein 	LOC_Os09g26620.1	"auxin-repressed protein, putative, expressed"	Medtr8g025840.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113548.1.S1_at	A	A1TS	POPTR_0003s01860	POPTR_0003s01860 (11)	scaffold_3:1728371-1729502(-) (11)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.1	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr7g143650.1	"ATPase, E1-E2 type; Heavy metal transport/detoxification protein "	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.113553.1.S1_a_at	A	A2TS	POPTR_0007s14960	POPTR_0007s14960 (11)//POPTR_1342s00200 (11)	scaffold_1342:2774-3151(+) (11)//scaffold_14:983217-983590(-) (9)//scaffold_7:14642562-14642901(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.113553.1.S1_at	A	A1TS	POPTR_1342s00200	POPTR_1342s00200 (10)	scaffold_1342:2576-3420(+) (10)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113553.2.S1_at	A	A1TS	POPTR_0007s14960	POPTR_0007s14960 (11)	scaffold_7:14639397-14642994(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.113579.1.S1_s_at	A	A1TS	POPTR_0004s05020	POPTR_0004s05020 (11)	scaffold_4:3772931-3773996(+) (11)	NA	Q946Y7	Syntaxin-61	AT1G28490.1	syntaxin of plants 61 	LOC_Os01g73230.1	"syntaxin 6, putative, expressed"	Medtr5g100170.1	Syntaxin/epimorphin family 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.113579.2.S1_at	A	A1TS	POPTR_0011s05870	POPTR_0011s05870 (10)	scaffold_11:5900645-5902220(+) (10)	NA	Q946Y7	Syntaxin-61	AT1G28490.1	syntaxin of plants 61 	LOC_Os01g73230.1	"syntaxin 6, putative, expressed"	Medtr5g100170.1	Syntaxin/epimorphin family 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.113597.1.S1_at	A	A1TS	POPTR_0006s13050	POPTR_0006s13050 (11)	scaffold_6:10266718-10267315(-) (11)	NA	Q4R6F8	T-complex protein 1 subunit beta	AT5G20890.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g42220.1	"T-complex protein, putative, expressed"	Medtr3g024690.1	"Protein kinase; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.11360.1.A1_at	A	A1TS	POPTR_0001s03520	POPTR_0001s03520 (11)	scaffold_1:2825991-2826671(+) (11)	NA	Q39131	Lamin-like protein	AT5G15350.1	early nodulin-like protein 17 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g021700.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.11360.3.S1_a_at	A	A1TS	POPTR_0003s18150	POPTR_0003s18150 (11)	scaffold_3:17344592-17345228(-) (11)	NA	Q39131	Lamin-like protein	AT5G15350.1	early nodulin-like protein 17 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g021700.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.113671.1.S1_at	A	A1TS	POPTR_0001s01500	POPTR_0001s01500 (11)	scaffold_1:1117300-1118598(-) (11)	NA	Q6NS09	Transmembrane protein 45B	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os11g40570.3	"plant viral response family protein, putative, expressed"	Medtr5g027370.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113672.1.S1_s_at	A	A1TS	POPTR_0014s01640	POPTR_0014s01640 (11)	scaffold_14:1527759-1528333(+) (11)	NA	Q5BIM8	DNA excision repair protein ERCC-8	AT1G27840.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g20430.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113676.1.S1_at	A	A1TS	POPTR_0001s09300	POPTR_0001s09300 (11)	scaffold_1:7102300-7102432(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT1G63470.1	AT hook motif DNA-binding family protein 	LOC_Os02g57820.1	"AT hook motif domain containing protein, expressed"	Medtr5g010440.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
PtpAffx.113677.1.S1_at	A	A1TS	POPTR_0001s01380	POPTR_0001s01380 (11)	scaffold_1:1022104-1024110(+) (11)	NA	Q94II3	Probable methyltransferase PMT21	AT4G19120.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr5g027150.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.113686.1.S1_s_at	A	A1TS	POPTR_0015s13360	POPTR_0015s13360 (11)	scaffold_15:13356583-13356823(+) (11)	NA	Q4FE45	E3 ubiquitin-protein ligase XBAT33	AT5G07270.1	XB3 ortholog 3 in Arabidopsis thaliana 	LOC_Os10g37730.1	"pollen ankyrin, putative, expressed"	AC146807_5.1	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1137.1.A1_at	A	A1TS	POPTR_0001s00720	POPTR_0001s00720 (11)	scaffold_1:599755-600158(-) (11)	NA	Q0V8M0	Protein KRI1 homolog	AT3G24080.2	KRR1 family protein 	LOC_Os05g41100.1	"protein kri1, putative, expressed"	Medtr2g129820.1	Krr1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113703.1.S1_at	A	A1MS	POPTR_0001s29010	POPTR_0001s29010 (11)	scaffold_1:27763879-27764087(-) (11)	POPTR_0001s28990 (8)	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.3	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113703.3.S1_a_at	A	A3TS	POPTR_0001s28990	POPTR_0001s28990 (11)//POPTR_0001s29010 (11)//POPTR_0009s08220 (11)	scaffold_1:27751851-27752805(-) (11)//scaffold_1:27764098-27765053(-) (11)//scaffold_9:7567099-7568093(-) (11)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.3	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.113703.3.S1_at	A	A1TS	POPTR_0009s08220	POPTR_0009s08220 (11)	scaffold_9:7567144-7568051(-) (11)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.1	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.113719.1.S1_at	A	A1TS	POPTR_0017s04030	POPTR_0017s04030 (11)	scaffold_17:3030521-3031515(-) (11)	NA	O80568	Inositol-tetrakisphosphate 1-kinase 4	AT2G43980.1	"inositol 1,3,4-trisphosphate 5/6-kinase 4 "	LOC_Os09g34300.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.11372.1.A1_at	A	A1TS	POPTR_0002s05110	POPTR_0002s05110 (11)	scaffold_2:3322257-3323083(-) (11)	NA	NA	NA	AT2G48140.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g57980.1	"LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr1g084060.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113737.1.S1_at	A	A1TS	POPTR_0009s11630	POPTR_0009s11630 (11)	scaffold_9:9616962-9618917(-) (11)	NA	Q6NLY8	HVA22-like protein k	AT4G36720.1	HVA22-like protein K 	LOC_Os07g38100.1	"HVA22, putative, expressed"	Medtr5g019610.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11374.1.S1_s_at	A	A1TS	POPTR_0015s05710	POPTR_0015s05710 (11)	scaffold_15:6056887-6057151(+) (11)	NA	Q9SH59	Reticulon-like protein B3	AT1G64090.1	Reticulan like protein B3 	LOC_Os05g45050.2	"reticulon domain containing protein, putative, expressed"	Medtr1g126140.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.113758.1.S1_s_at	A	A1TS	POPTR_0003s12230	POPTR_0003s12230 (11)	scaffold_3:12879912-12880777(+) (11)	NA	NA	NA	AT4G11740.1	Ubiquitin-like superfamily protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113773.1.S1_at	A	A1TS	POPTR_0003s09630	POPTR_0003s09630 (9)	scaffold_3:10906345-10908353(-) (9)	NA	P23922	Transcription factor HBP-1a	AT2G35530.1	basic region/leucine zipper transcription factor 16 	LOC_Os12g13170.2	"transcription factor, putative, expressed"	Medtr5g028830.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.113782.1.S1_s_at	A	A1TS	POPTR_0004s00330	POPTR_0004s00330 (10)	scaffold_4:89918-90524(+) (11)	NA	NA	NA	AT3G01435.1	Expressed protein 	LOC_Os02g09600.3	expressed protein	Medtr1g028460.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.113801.1.S1_s_at	A	A2TS	POPTR_0013s07710	POPTR_0019s07170 (11)//POPTR_0013s07710 (11)	scaffold_13:6555919-6556189(+) (11)//scaffold_19:7912431-7912689(+) (11)	NA	Q5U2W5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.113831.1.A1_s_at	A	A1TS	POPTR_0005s11710	POPTR_0005s11710 (11)	scaffold_5:8535344-8535516(+) (11)	NA	NA	NA	AT2G17972.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 34 Blast hits to 34 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os06g50130.1	expressed protein	Medtr8g090030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113839.1.A1_at	A	A1TS	POPTR_0001s01120	POPTR_0001s01120 (11)	scaffold_1:870916-871195(-) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT1G31420.2	Leucine-rich repeat protein kinase family protein 	LOC_Os03g16010.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g026640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.113856.1.A1_at	A	A1TS	POPTR_0016s06640	POPTR_0016s06640 (11)	scaffold_16:4451502-4451634(+) (11)	NA	Q5IH14	Sucrose-phosphatase 1	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os02g05030.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.113868.1.A1_at	A	A1TS	POPTR_0016s10940	POPTR_0016s10940 (9)	scaffold_16:9328381-9329236(-) (9)	NA	Q8VCE1	DnaJ homolog subfamily C member 28	AT5G03560.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44650.1	expressed protein	Medtr1g074310.1	"J domain-containing protein C21orf55 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113871.1.A1_at	A	A1TS	POPTR_0012s01900	POPTR_0012s01900 (11)	scaffold_12:1483704-1484151(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G60470.1	Plant protein of unknown function (DUF247) 	LOC_Os11g34090.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1139.1.S1_a_at	A	A1TS	POPTR_0001s31670	POPTR_0001s31670 (11)	scaffold_1:30035502-30037130(+) (11)	NA	Q9H3K6	BolA-like protein 2	AT5G09830.1	BolA-like family protein 	LOC_Os01g64680.1	"bolA, putative, expressed"	Medtr4g141780.1	BolA-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11390.1.S1_at	A	A1TS	POPTR_0003s07760	POPTR_0003s07760 (11)	scaffold_3:9282627-9283325(+) (11)	NA	Q05466	Homeobox-leucine zipper protein HAT4	AT4G16780.1	homeobox protein 2 	LOC_Os10g41230.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11390.2.S1_at	A	A1TS	POPTR_0003s07760	POPTR_0003s07760 (11)	scaffold_3:9284406-9284771(+) (11)	NA	Q05466	Homeobox-leucine zipper protein HAT4	AT4G16780.1	homeobox protein 2 	LOC_Os10g41230.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11390.3.A1_a_at	A	A1TS	POPTR_0003s07760	POPTR_0003s07760 (11)	scaffold_3:9283921-9284583(+) (11)	NA	Q05466	Homeobox-leucine zipper protein HAT4	AT4G16780.1	homeobox protein 2 	LOC_Os10g41230.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.113905.1.A1_s_at	A	A1TS	POPTR_0008s14730	POPTR_0008s14730 (11)	scaffold_8:9776437-9776868(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113940.1.A1_at	A	A1TS	POPTR_0018s01270	POPTR_0018s01270 (11)	scaffold_18:1236160-1236636(-) (11)	NA	Q3S4B7	3-hydroxybenzoate 6-hydroxylase	AT5G11330.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os06g39660.1	"FAD binding domain containing protein, expressed"	Medtr1g013200.1	FAD dependent oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113942.1.A1_at	A	A1MA	POPTR_0018s09120	POPTR_0018s09120 (11)	scaffold_18:10024337-10024729(-) (11)	NA	Q9SVV2	Probable xyloglucan endotransglucosylase/hydrolase protein 26	AT4G28850.1	xyloglucan endotransglucosylase/hydrolase 26 	LOC_Os06g48180.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr4g159420.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.113964.2.A1_a_at	A	A1TS	POPTR_0011s02350	POPTR_0011s02350 (11)	scaffold_11:2231680-2231989(+) (11)	NA	Q93V43	Transcription factor TCP2	AT4G18390.2	"TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 "	LOC_Os07g05720.1	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113973.1.A1_s_at	A	A1TS	POPTR_0010s26110	POPTR_0010s26110 (11)	scaffold_10:21456220-21456285(-) (11)	NA	Q8LSN3	Phytochrome-associated serine/threonine protein phosphatase	AT1G50370.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g49690.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g047030.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.11398.1.S1_at	A	A1TS	POPTR_0001s44510	POPTR_0001s44510 (11)	scaffold_1:44911658-44912117(+) (11)	NA	Q8LC95	Early nodulin-like protein 3	AT3G20570.1	early nodulin-like protein 9 	LOC_Os01g57880.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g110820.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.113981.1.A1_at	A	A1TS	POPTR_0008s12210	POPTR_0008s12210 (11)	scaffold_8:7881630-7881676(-) (11)	NA	Q39265	Zinc finger protein 6	AT1G68360.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g04120.1	"ZOS1-03 - C2H2 zinc finger protein, expressed"	Medtr1g140600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.113981.1.A1_s_at	A	A1TS	POPTR_0008s12210	POPTR_0008s12210 (11)	scaffold_8:7881451-7881621(-) (11)	NA	Q39265	Zinc finger protein 6	AT1G68360.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g04120.1	"ZOS1-03 - C2H2 zinc finger protein, expressed"	Medtr1g140600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11399.1.S1_at	A	A1TS	POPTR_0006s06160	POPTR_0006s06160 (11)	scaffold_6:4373113-4375772(-) (11)	NA	Q93VD3	CBL-interacting serine/threonine-protein kinase 23	AT1G30270.1	CBL-interacting protein kinase 23 	LOC_Os07g05620.2	"CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g056750.1	Protein kinase; NAF; 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.113991.1.A1_at	A	A1TS	POPTR_0004s18090	POPTR_0004s18090 (9)	scaffold_4:18103858-18104086(+) (9)	NA	P35133	Ubiquitin-conjugating enzyme E2 10	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os02g02830.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g098530.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.1140.1.A1_at	A	A1MS	POPTR_0003s15150	POPTR_0003s15150 (11)	scaffold_3:15012632-15013067(-) (11)	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT2G02370.2	SNARE associated Golgi protein family 	LOC_Os03g25750.1	"SNARE associated Golgi protein, putative, expressed"	Medtr2g034030.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114007.1.A1_s_at	A	A1TS	POPTR_0006s09110	POPTR_0006s09110 (11)	scaffold_6:6735056-6735363(+) (11)	NA	NA	NA	AT5G02090.1	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g38264.1	expressed protein	Medtr4g018920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11401.1.S1_at	A	A1TS	POPTR_0019s05120	POPTR_0019s05120 (9)	scaffold_19:5355763-5356255(-) (9)	NA	NA	NA	AT5G18130.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g59180.2	expressed protein	Medtr7g102530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11401.4.A1_s_at	A	A1TS	POPTR_0013s05380	POPTR_0013s05380 (10)	scaffold_13:3846103-3846161(+) (10)	NA	NA	NA	AT5G18130.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g59180.2	expressed protein	Medtr7g102530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11401.5.A1_at	A	A1TS	POPTR_0013s05380	POPTR_0013s05380 (11)	scaffold_13:3845651-3846221(+) (11)	NA	NA	NA	AT5G18130.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g59180.2	expressed protein	Medtr7g102530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114012.1.A1_at	A	A1TS	POPTR_0014s05640	POPTR_0014s05640 (11)	scaffold_14:4201397-4201455(+) (11)	NA	O82528	60S ribosomal protein L15	AT4G16720.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.114042.1.A1_s_at	A	A1TS	POPTR_0004s24130	POPTR_0004s24130 (11)	scaffold_4:22858962-22859114(-) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT4G25160.1	U-box domain-containing protein kinase family protein 	LOC_Os06g04880.1	"serine threonine kinase, putative, expressed"	Medtr3g009640.1	Protein kinase; U box 	GO:0006950|response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.114043.1.A1_at	A	A1TS	POPTR_0002s07040	POPTR_0002s07040 (11)	scaffold_2:4766367-4766716(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114053.1.A1_s_at	A	A1TS	POPTR_0007s00390	POPTR_0007s00390 (11)	scaffold_7:134602-134748(+) (11)	NA	P48979	Polygalacturonase	AT2G43890.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr2g056320.1	"Regulator of chromosome condensation, RCC1; Parallel beta-helix repeat "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.114060.1.A1_at	A	A1TS	POPTR_0006s03780	POPTR_0006s03780 (10)	scaffold_6:2534804-2535108(-) (10)	NA	P32138	Alpha-glucosidase yihQ	AT3G45940.1	Glycosyl hydrolases family 31  protein 	LOC_Os01g16310.1	"glycosyl hydrolase, family 31, putative, expressed"	Medtr7g106800.1	"Glycoside hydrolase, family 31 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.114066.1.A1_at	A	A1TS	POPTR_0008s02280	POPTR_0008s02280 (11)	scaffold_8:1098075-1099286(+) (11)	NA	Q5SR56	Hippocampus abundant transcript-like protein 1	AT2G16980.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr1g117260.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114067.2.A1_at	A	A1TS	POPTR_0016s08020	POPTR_0016s08020 (11)	scaffold_16:5818934-5819721(-) (11)	NA	Q9FVS1	F-box/kelch-repeat protein At1g57790	AT1G57790.1	F-box family protein 	LOC_Os08g34890.1	OsFBDUF46 - F-box and DUF domain containing protein	Medtr7g127580.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114067.3.S1_at	A	A1MA	POPTR_0006s22910	POPTR_0006s22910 (10)	scaffold_6:21773566-21775640(+) (11)	NA	Q9FVS1	F-box/kelch-repeat protein At1g57790	AT1G57790.1	F-box family protein 	LOC_Os08g34890.1	OsFBDUF46 - F-box and DUF domain containing protein	Medtr7g127580.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114068.1.S1_s_at	A	A1TS	POPTR_0015s13590	POPTR_0015s13590 (11)	scaffold_15:13473046-13473684(+) (11)	NA	Q9FXW4	Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT3G61040.1	"cytochrome P450, family 76, subfamily C, polypeptide 7 "	LOC_Os10g08540.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.114108.1.A1_s_at	A	A1TS	POPTR_0003s15120	POPTR_0003s15120 (11)	scaffold_3:14989949-14992019(+) (11)	NA	Q9C8Z4	Uncharacterized protein At3g06530	AT3G06530.2	ARM repeat superfamily protein 	LOC_Os04g46310.1	"HEAT repeat family protein, putative, expressed"	Medtr5g099720.1	"BP28, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114125.1.A1_at	A	A1TS	POPTR_0004s13380	POPTR_0004s13380 (11)	scaffold_4:13189419-13190450(+) (11)	NA	Q9CA64	Transcription factor bHLH135	AT3G28857.1	basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g26410.1	"bHLH family protein, putative, expressed"	Medtr5g040160.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114160.1.A1_at	A	A1TS	POPTR_0002s12350	POPTR_0002s12350 (11)	scaffold_2:9167556-9167597(+) (11)	NA	Q9M7N6	MFP1 attachment factor 1	AT1G47200.1	WPP domain protein 2 	LOC_Os03g11060.1	"MFP1 attachment factor 1, putative, expressed"	Medtr1g023740.1	"MFP1 attachment factor 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114168.1.A1_at	A	A1TS	POPTR_0001s23950	POPTR_0001s23950 (9)	scaffold_1:23331391-23331423(-) (9)	NA	NA	NA	AT3G13510.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114210.2.A1_at	A	A1MS	POPTR_0013s00610	POPTR_0013s00610 (11)	scaffold_13:293287-293429(-) (11)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.114215.1.A1_at	A	A1TS	POPTR_0002s24880	POPTR_0002s24880 (10)	scaffold_2:22093370-22093608(-) (10)	NA	NA	NA	AT4G13030.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g19280.1	expressed protein	Medtr7g062150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114237.1.A1_at	A	A1TA	POPTR_0016s13680	POPTR_0016s13680 (11)	scaffold_16:12856966-12857297(-) (11)	NA	P50160	Sex determination protein tasselseed-2	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g18740.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.11424.1.A1_s_at	A	A1TS	POPTR_0001s27620	POPTR_0001s27620 (11)	scaffold_1:26498836-26499245(+) (11)	NA	Q9LHJ8	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	AT3G12630.1	A20/AN1-like zinc finger family protein 	LOC_Os09g31200.1	"AN1-like zinc finger domain containing protein, expressed"	Medtr3g030430.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.11424.2.A1_s_at	A	A1TS	POPTR_0009s06840	POPTR_0009s06840 (11)	scaffold_9:6539358-6539675(+) (11)	NA	Q9LHJ8	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	AT3G12630.1	A20/AN1-like zinc finger family protein 	LOC_Os09g31200.1	"AN1-like zinc finger domain containing protein, expressed"	Medtr3g030430.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.114249.1.A1_at	A	A1MS	POPTR_0001s08030	POPTR_0001s08030 (11)	scaffold_1:6086067-6086430(-) (11)	NA	P34205	Deoxyribodipyrimidine photo-lyase	AT1G12370.2	photolyase 1 	LOC_Os10g08580.1	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g011940.1	"DNA photolyase, FAD-binding "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.114249.1.A1_s_at	A	A1TS	POPTR_0001s08030	POPTR_0001s08030 (11)	scaffold_1:6086159-6086360(-) (11)	NA	P34205	Deoxyribodipyrimidine photo-lyase	AT1G12370.2	photolyase 1 	LOC_Os10g08580.1	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g011940.1	"DNA photolyase, FAD-binding "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.114251.1.A1_at	A	A1TS	POPTR_0005s22480	POPTR_0005s22480 (11)	scaffold_5:21402395-21402779(+) (11)	NA	Q8VWJ2	Probable WRKY transcription factor 28	AT4G18170.1	WRKY DNA-binding protein 28 	LOC_Os01g43650.2	"OsWRKY11 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g098600.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.114257.1.S1_at	A	A1TS	POPTR_0005s03720	POPTR_0005s03720 (11)	scaffold_5:2486305-2486775(-) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT1G54860.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11426.1.A1_at	A	A1TS	POPTR_0014s05790	POPTR_0014s05790 (11)	scaffold_14:4351054-4352069(+) (11)	NA	A5YKK6	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.1	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11426.2.S1_at	A	A1TS	POPTR_0002s14400	POPTR_0002s14400 (11)	scaffold_2:10681558-10681723(+) (11)	NA	A0JP85	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.1	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114262.1.A1_s_at	A	A1TS	POPTR_0006s01080	POPTR_0006s01080 (11)	scaffold_6:612942-613146(+) (11)	NA	A5PKH3	Fumarylacetoacetase	AT1G12050.1	"fumarylacetoacetase, putative "	LOC_Os02g10310.1	"fumarylacetoacetase, putative, expressed"	Medtr2g029700.1	Fumarylacetoacetase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0009072|aromatic amino acid family metabolic process	GO:0004334|fumarylacetoacetase activity	NA
PtpAffx.11427.1.A1_at	A	A1TS	POPTR_0017s02860	POPTR_0017s02860 (10)	scaffold_17:2077602-2077864(+) (11)	NA	Q9C7U5	"Glucan endo-1,3-beta-glucosidase 2"	AT1G66250.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g085920.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.114272.1.A1_at	A	A2TS	POPTR_0002s07460	POPTR_0002s07460 (10)//POPTR_0487s00220 (9)	scaffold_2:5104586-5105397(+) (10)//scaffold_487:2202-11304(+) (11)//scaffold_487:10777-11420(+) (9)	POPTR_0487s00200 (7)	P00303	Basic blue protein	AT2G02850.1	plantacyanin 	LOC_Os03g50160.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g137630.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.114277.1.A1_at	A	A1MS	POPTR_0007s07000	POPTR_0007s07000 (11)	scaffold_7:5342931-5343117(-) (11)	NA	NA	NA	AT2G22140.1	essential meiotic endonuclease 1B 	LOC_Os04g55500.1	expressed protein	Medtr4g141320.1	hypothetical protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0005515|protein binding||GO:0004518|nuclease activity||GO:0003677|DNA binding	NA
PtpAffx.114309.1.A1_s_at	A	A1TS	POPTR_0008s03540	POPTR_0008s03540 (11)	scaffold_8:1895179-1895452(-) (11)	NA	P35159	Ribosomal large subunit pseudouridine synthase B	AT2G39140.1	pseudouridine synthase family protein 	LOC_Os03g05806.1	"pseudouridine synthase family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.11431.1.S1_at	A	A1TS	POPTR_0003s08350	POPTR_0003s08350 (11)	scaffold_3:9735415-9735843(+) (11)	NA	NA	NA	AT4G17085.1	Putative membrane lipoprotein 	LOC_Os06g50090.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114321.1.A1_at	A	A1TS	POPTR_0001s33390	POPTR_0001s33390 (11)	scaffold_1:31565535-31566077(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G41040.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr3g150860.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.114332.1.A1_at	A	A1TS	POPTR_0006s04240	POPTR_0006s04240 (11)	scaffold_6:2906883-2907400(-) (11)	NA	Q9LZA6	Triacylglycerol lipase SDP1	AT5G04040.1	Patatin-like phospholipase family protein 	LOC_Os01g55650.1	"phospholipase, patatin family, putative, expressed"	Medtr7g107500.1	Patatin; ARF/SAR superfamily 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.11435.1.S1_at	A	A1TS	POPTR_0011s11270	POPTR_0011s11270 (11)	scaffold_11:13995701-13996259(-) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT1G53300.1	tetratricopetide-repeat thioredoxin-like 1 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.114352.1.A1_at	A	A1TS	POPTR_0002s26170	POPTR_0002s26170 (11)	scaffold_2:23191942-23192412(+) (11)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
PtpAffx.114367.1.A1_at	A	A1TS	POPTR_0003s17740	POPTR_0003s17740 (11)	scaffold_3:17025619-17025888(-) (10)//scaffold_3:17038186-17038469(-) (11)	POPTR_0003s17730 (6)	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.114369.1.S1_at	A	A1TS	POPTR_0010s10450	POPTR_0010s10450 (11)	scaffold_10:10957467-10957946(-) (11)	NA	O80739	Putative potassium transporter 12	AT1G60160.1	Potassium transporter family protein 	LOC_Os09g21000.1	"potassium transporter, putative, expressed"	Medtr2g008870.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.11439.1.A1_at	A	A1TS	POPTR_0005s15740	POPTR_0005s15740 (11)	scaffold_5:12344685-12345665(+) (11)	NA	Q84L31	Putative DNA repair protein RAD23-3	AT3G02540.3	Rad23 UV excision repair protein family 	LOC_Os09g24200.1	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.114391.1.A1_at	A	A1TS	POPTR_0010s21000	POPTR_0010s21000 (11)	scaffold_10:18440654-18440901(+) (11)	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114411.1.S1_at	A	A1TS	POPTR_0012s10810	POPTR_0012s10810 (11)	scaffold_12:11522329-11523079(+) (11)	NA	NA	NA	AT1G53200.1	unknown protein; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g13570.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114412.1.A1_s_at	A	A1TS	POPTR_0001s33470	POPTR_0001s33470 (11)	scaffold_1:31674838-31674960(-) (11)	NA	Q9LSD5	Transcription factor TCP20	AT3G27010.1	"TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 "	LOC_Os01g69980.1	"TCP family transcription factor, putative, expressed"	Medtr7g018180.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11443.1.S1_a_at	A	A2TS	POPTR_0008s06000	POPTR_0008s06000 (11)//POPTR_0010s20670 (11)	scaffold_10:18162448-18163557(-) (11)//scaffold_8:3533173-3534549(+) (11)	NA	A0JMG1	Speckle-type POZ protein-like B	AT2G39760.1	BTB/POZ/MATH-domains containing protein 	LOC_Os07g01140.1	"MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.11443.1.S1_at	A	A1TS	POPTR_0008s06000	POPTR_0008s06000 (11)	scaffold_8:3533124-3534669(+) (11)	NA	A0JMG1	Speckle-type POZ protein-like B	AT2G39760.1	BTB/POZ/MATH-domains containing protein 	LOC_Os07g01140.1	"MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.11443.2.A1_at	A	A1TS	POPTR_0010s20670	POPTR_0010s20670 (11)	scaffold_10:18162192-18162521(-) (11)	NA	Q6IQ16	Speckle-type POZ protein-like	AT2G39760.1	BTB/POZ/MATH-domains containing protein 	LOC_Os07g01140.1	"MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.114435.1.A1_at	A	A2TS	POPTR_0010s20250	POPTR_0010s20250 (10)//POPTR_0010s20270 (10)	scaffold_10:17920942-17921078(-) (10)//scaffold_10:17931147-17931296(-) (11)	NA	Q9FIA0	Cytokinin-N-glucosyltransferase 2	AT3G11340.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g60960.1	"cytokinin-N-glucosyltransferase 1, putative, expressed"	Medtr3g092670.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114442.1.A1_at	A	A1TS	POPTR_0011s05230	POPTR_0011s05230 (10)	scaffold_11:5100099-5101238(-) (10)	NA	NA	NA	AT4G21700.1	Protein of unknown function (DUF2921) 	LOC_Os05g48370.1	expressed protein	Medtr2g017240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114469.1.A1_at	A	A1MS	POPTR_0019s03530	POPTR_0019s03530 (11)	scaffold_19:3613444-3614080(+) (11)	NA	O07051	L-allo-threonine aldolase	AT1G08630.4	threonine aldolase 1 	LOC_Os04g43650.2	"L-allo-threonine aldolase, putative, expressed"	Medtr1g093690.1	"Aromatic amino acid beta-eliminating lyase/threonine aldolase; Polynucleotidyl transferase, Ribonuclease H fold; ; "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity	NA
PtpAffx.114479.1.S1_at	A	A1TS	POPTR_0002s12450	POPTR_0002s12450 (11)	scaffold_2:9235810-9236364(-) (11)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.114482.1.A1_at	A	A1TS	POPTR_0005s16130	POPTR_0005s16130 (9)	scaffold_5:12782941-12783912(+) (9)	NA	Q8L751	Oxysterol-binding protein-related protein 1C	AT4G08180.1	OSBP(oxysterol binding protein)-related protein 1C 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.114484.1.A1_at	A	A3MS	POPTR_0004s08410	POPTR_0004s08410 (11)//POPTR_0021s00550 (10)//POPTR_0004s12160 (10)	scaffold_21:249586-249970(+) (10)//scaffold_4:6958012-6958470(+) (11)//scaffold_4:11077492-11077876(-) (10)	NA	Q96D46	60S ribosomal export protein NMD3	AT2G03820.1	nonsense-mediated mRNA decay NMD3 family protein 	LOC_Os10g42320.1	"nonsense-mediated mRNA decay protein 3, putative, expressed"	Medtr3g087050.1	NMD3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114487.1.A1_a_at	A	A1TS	POPTR_0013s10060	POPTR_0013s10060 (11)	scaffold_13:10042165-10042214(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g07380.1	OsFBX188 - F-box domain containing protein	Medtr4g096100.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114487.1.A1_at	A	A1TS	POPTR_0013s10060	POPTR_0013s10060 (11)	scaffold_13:10041649-10042148(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g07380.1	OsFBX188 - F-box domain containing protein	Medtr4g096100.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114501.1.A1_at	A	A1TS	POPTR_0010s09620	POPTR_0010s09620 (11)	scaffold_10:10365533-10366046(-) (11)	NA	O23337	Pentatricopeptide repeat-containing protein At4g14820	AT4G14820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g08120.1	"pentatricopeptide, putative, expressed"	Medtr5g006540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114510.1.A1_at	A	A1TS	POPTR_0005s04670	POPTR_0005s04670 (11)	scaffold_5:3133711-3134680(+) (11)	NA	P56287	Probable translation initiation factor eIF-2B subunit epsilon	AT2G34970.1	Trimeric LpxA-like enzyme 	LOC_Os02g56740.1	"translation initiation factor eIF-2B subunit epsilon, putative, expressed"	Medtr6g025610.1	eIF4-gamma/eIF5/eIF2-epsilon 	NA	GO:0016740|transferase activity	NA
PtpAffx.114520.1.A1_at	A	A1MS	POPTR_0018s14010	POPTR_0018s14010 (11)	scaffold_18:14263008-14263175(-) (11)	NA	Q9LUL5	Pentatricopeptide repeat-containing protein At3g14330	AT3G14330.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g30710.1	"pentatricopeptide, putative, expressed"	Medtr8g029460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114526.1.A1_at	A	A1TS	POPTR_0010s23450	POPTR_0010s23450 (11)	scaffold_10:20031324-20032632(-) (11)	NA	NA	NA	AT3G54880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 137 Blast hits to 137 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os07g29640.3	expressed protein	Medtr4g005450.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114531.1.A1_at	A	A1TS	POPTR_0006s26340	POPTR_0006s26340 (11)	scaffold_6:24568415-24570117(-) (11)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.114531.1.A1_s_at	A	A1TS	POPTR_0006s26340	POPTR_0006s26340 (11)	scaffold_6:24567860-24568426(-) (11)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.114535.1.A1_at	A	A1MS	POPTR_0008s00680	POPTR_0008s00680 (10)	scaffold_8:314433-314972(+) (10)	NA	Q9LK31	Kelch repeat-containing protein At3g27220	AT1G51540.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g41020.1	"kelch repeat protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114543.1.A1_at	A	A1TS	POPTR_0008s22660	POPTR_0008s22660 (10)	scaffold_8:17341940-17342564(+) (10)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr8g139200.1	DIRP; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114549.1.A1_a_at	A	A1TS	POPTR_0004s07060	POPTR_0004s07060 (11)	scaffold_4:5870227-5870692(-) (11)	NA	NA	NA	AT5G62650.1	Tic22-like family protein 	LOC_Os01g12550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114552.1.A1_at	A	A1TS	POPTR_0012s07990	POPTR_0012s07990 (11)	scaffold_12:8970033-8970327(-) (11)	NA	Q9LRA7	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9"	AT1G23870.1	trehalose-phosphatase/synthase 9 	LOC_Os08g31980.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g110050.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.114564.1.A1_a_at	A	A1TS	POPTR_0008s16500	POPTR_0008s16500 (11)	scaffold_8:11075802-11076304(-) (11)	NA	NA	NA	AT1G04340.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114565.1.A1_at	A	A1TS	POPTR_0003s22250	POPTR_0003s22250 (11)	scaffold_3:20091526-20092024(-) (11)	NA	NA	NA	AT4G12070.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g48640.1	expressed protein	Medtr2g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114578.1.A1_at	A	A1TS	POPTR_0005s16080	POPTR_0005s16080 (11)	scaffold_5:12742231-12742714(+) (11)	NA	O94235	Serine/threonine-protein kinase mph1	AT1G77720.1	putative protein kinase 1 	LOC_Os03g49750.1	"protein kinase family protein, putative, expressed"	Medtr3g098080.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11459.1.A1_at	A	A1TS	POPTR_0014s02480	POPTR_0014s02480 (11)	scaffold_14:2074126-2074176(+) (11)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.11459.2.A1_at	A	A1TS	POPTR_0014s02500	POPTR_0014s02500 (11)	scaffold_14:2078722-2078759(+) (11)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.114620.1.A1_at	A	A1TS	POPTR_0002s25880	POPTR_0002s25880 (9)	scaffold_2:22893256-22893294(-) (9)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.114622.1.A1_at	A	A1TS	POPTR_0014s10760	POPTR_0014s10760 (11)	scaffold_14:8049673-8050168(+) (11)	NA	Q9M115	Probable S-acyltransferase At4g01730	AT4G01730.1	DHHC-type zinc finger family protein 	LOC_Os12g16210.1	"zinc finger family protein, putative, expressed"	Medtr1g105750.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.114653.1.A1_at	A	A1MS	POPTR_0017s04240	POPTR_0017s04240 (11)	scaffold_17:3271702-3271976(+) (11)	NA	Q6YXY2	Probable histone acetyltransferase HAC-like 1	AT1G05690.1	BTB and TAZ domain protein 3 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr5g015750.1	"Zinc finger, TAZ-type; BTB/POZ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.114663.1.A1_at	A	A1TS	POPTR_0004s20150	POPTR_0004s20150 (11)	scaffold_4:19795709-19796564(+) (11)	NA	NA	NA	AT1G08390.1	unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g47990.1	"OB-fold nucleic acid binding domain containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.114669.1.A1_at	A	A1TS	POPTR_0016s07250	POPTR_0016s07250 (11)	scaffold_16:5089243-5090253(-) (11)	NA	P42730	Heat shock protein 101	AT3G52490.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g33980.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr1g112350.1	"Immunoglobulin/major histocompatibility complex; Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114670.1.A1_at	A	A1MS	POPTR_0001s34470	POPTR_0001s34470 (11)	scaffold_1:32588586-32589547(-) (11)	NA	Q940S5	Coatomer subunit zeta-1	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.11468.1.A1_at	A	A1TS	POPTR_0009s03180	POPTR_0009s03180 (9)	scaffold_9:3852645-3852966(-) (9)	NA	Q8VYR2	Nudix hydrolase 9	AT3G46200.1	nudix hydrolase homolog 9 	LOC_Os05g02640.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g079320.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.114682.1.S1_s_at	A	A1TS	POPTR_0010s25630	POPTR_0010s25630 (11)	scaffold_10:21221993-21222906(-) (11)	NA	Q54VZ8	Exocyst complex component 8	AT5G49830.1	exocyst complex component 84B 	LOC_Os07g10110.1	expressed protein	Medtr4g023160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114694.1.A1_at	A	A1TS	POPTR_0017s11120	POPTR_0017s11120 (11)	scaffold_17:10795252-10795687(+) (11)	NA	NA	NA	AT1G59650.1	Protein of unknown function (DUF1336) 	LOC_Os03g48660.1	"DUF1336 domain containing protein, expressed"	Medtr5g038290.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114697.1.A1_at	A	A1TS	POPTR_0015s15450	POPTR_0015s15450 (11)	scaffold_15:14719561-14720150(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1147.1.A1_at	A	A1TS	POPTR_0001s37020	POPTR_0001s37020 (11)	scaffold_1:35840114-35841027(-) (11)	NA	Q42545	"Cell division protein ftsZ homolog, chloroplastic"	AT5G55280.1	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 	LOC_Os04g56970.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr5g101550.1	"Tubulin/FtsZ, C-terminal "	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.1147.2.A1_a_at	A	A1TS	POPTR_0001s37020	POPTR_0001s37020 (11)	scaffold_1:35842795-35843501(-) (11)	NA	Q42545	"Cell division protein ftsZ homolog, chloroplastic"	AT5G55280.1	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 	LOC_Os04g56970.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr5g101550.1	"Tubulin/FtsZ, C-terminal "	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.1147.2.A1_at	A	A1MS	POPTR_0001s37020	POPTR_0001s37020 (9)	scaffold_1:35842883-35843108(-) (9)	NA	Q42545	"Cell division protein ftsZ homolog, chloroplastic"	AT5G55280.1	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 	LOC_Os04g56970.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr5g101550.1	"Tubulin/FtsZ, C-terminal "	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.114724.1.A1_at	A	A1TS	POPTR_0004s09470	POPTR_0004s09470 (11)	scaffold_4:8002218-8002449(+) (11)	NA	NA	NA	AT5G16220.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os01g04650.1	"PB1 domain containing protein, expressed"	Medtr8g096190.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114727.2.A1_s_at	A	A1TS	POPTR_0005s20980	POPTR_0005s20980 (11)	scaffold_5:20100773-20101173(-) (11)	NA	Q3E7Q9	Probable glycosyltransferase At5g25310	AT1G21480.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr4g159530.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.114732.2.A1_a_at	A	A1TS	POPTR_0014s17970	POPTR_0014s17970 (11)	scaffold_14:14566600-14566971(+) (11)	NA	NA	NA	AT1G76065.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os02g44704.2	"LYR motif containing protein, putative, expressed"	Medtr1g032040.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114735.1.A1_at	A	A1TS	POPTR_0007s05020	POPTR_0007s05020 (11)	scaffold_7:3222824-3223315(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114743.2.A1_a_at	A	A1TS	POPTR_0008s06680	POPTR_0008s06680 (11)	scaffold_8:3997315-3998459(-) (11)	POPTR_0010s19760 (6)	NA	NA	AT2G40070.1	BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g04880.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g093370.1	"En/Spm-like transposon protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114748.1.A1_at	A	A1TS	POPTR_0002s26290	POPTR_0002s26290 (10)	scaffold_2:23265770-23266738(+) (10)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT2G16230.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g095460.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.11475.1.A1_at	A	A1TS	POPTR_0003s14080	POPTR_0003s14080 (11)	scaffold_3:14263806-14264851(+) (11)	NA	O65781	UDP-glucose 4-epimerase GEPI48	AT4G10960.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 5 	LOC_Os05g51670.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.11475.2.A1_s_at	A	A1TS	POPTR_0001s10700	POPTR_0001s10700 (11)	scaffold_1:8321124-8321658(+) (11)	NA	O65781	UDP-glucose 4-epimerase GEPI48	AT4G10960.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 5 	LOC_Os05g51670.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.114758.1.A1_at	A	A1MS	POPTR_0001s21330	POPTR_0001s21330 (11)	scaffold_1:19738678-19738893(-) (11)	NA	NA	NA	AT5G09390.1	CD2-binding protein-related 	LOC_Os09g20590.1	"CD2-binding protein-related, putative, expressed"	Medtr2g008850.1	"CD2-binding protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114758.2.A1_at	A	A1TS	POPTR_0001s21330	POPTR_0001s21330 (11)	scaffold_1:19739275-19739726(-) (11)	NA	NA	NA	AT5G09390.1	CD2-binding protein-related 	LOC_Os09g20590.1	"CD2-binding protein-related, putative, expressed"	Medtr2g008850.1	"CD2-binding protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11476.1.S1_at	A	A1TS	POPTR_0010s20590	POPTR_0010s20590 (11)	scaffold_10:18116581-18117815(+) (11)	NA	O04015	Delta-1-pyrroline-5-carboxylate synthase	AT3G55610.1	delta 1-pyrroline-5-carboxylate synthase 2 	LOC_Os05g38150.2	"amino acid kinase, putative, expressed"	Medtr3g092110.1	Gamma-glutamyl phosphate reductase GPR; Glutamate 5-kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.114761.1.A1_at	A	A1MS	POPTR_0009s15340	POPTR_0009s15340 (11)	scaffold_9:11893281-11893706(+) (11)	NA	Q058N4	"Magnesium transporter MRS2-11, chloroplastic"	AT5G22830.1	magnesium (Mg) transporter 10 	LOC_Os03g48000.1	"CorA-like magnesium transporter protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114764.1.A1_at	A	A1TS	POPTR_0005s05910	POPTR_0005s05910 (11)	scaffold_5:3884488-3884949(-) (11)	NA	Q8LGD5	Protein MKS1	AT3G18690.1	MAP kinase substrate 1 	LOC_Os08g01260.1	"VQ domain containing protein, putative"	Medtr4g142470.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114776.1.A1_at	A	A1TS	POPTR_0010s02910	POPTR_0010s02910 (11)	scaffold_10:3380226-3380585(-) (11)	NA	Q7XJ53	Probable protein phosphatase 2C 35	AT3G06270.1	Protein phosphatase 2C family protein 	LOC_Os02g17970.1	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g026070.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11478.1.S1_s_at	A	A1TS	POPTR_0010s26210	POPTR_0010s26210 (11)	scaffold_10:21522339-21522666(-) (11)	NA	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.11478.2.S1_at	A	A1TS	POPTR_0008s00270	POPTR_0008s00270 (11)	scaffold_8:57763-58195(+) (11)	NA	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.114780.1.A1_at	A	A1TS	POPTR_0002s11370	POPTR_0002s11370 (11)	scaffold_2:8408016-8408391(+) (11)	NA	P36917	"Endo-1,4-beta-xylanase A"	AT1G58370.1	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein 	LOC_Os07g27320.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr3g163350.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.114784.1.A1_at	A	A1TS	POPTR_0008s23150	POPTR_0008s23150 (11)	scaffold_8:18409424-18409662(+) (11)	NA	Q94AJ5	Probable polygalacturonase At1g80170	AT1G23460.1	Pectin lyase-like superfamily protein 	LOC_Os02g03750.1	"polygalacturonase, putative, expressed"	Medtr1g106120.1	"Ribosome-binding factor A; Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.114790.1.A1_at	A	A1MS	POPTR_0004s08750	POPTR_0004s08750 (11)	scaffold_4:7331390-7331722(-) (11)	NA	Q5XEZ8	U-box domain-containing protein 2	AT3G03440.1	ARM repeat superfamily protein 	LOC_Os01g02200.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g087030.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114792.1.A1_at	A	A1MS	POPTR_0001s00970	POPTR_0001s00970 (11)	scaffold_1:781820-781882(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140400.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.114792.1.A1_s_at	A	A1TS	POPTR_0001s00970	POPTR_0001s00970 (11)	scaffold_1:781905-782217(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140400.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.1148.1.S1_a_at	A	A1TS	POPTR_0017s08810	POPTR_0017s08810 (11)	scaffold_17:7386626-7387696(-) (11)	NA	Q9SDS7	V-type proton ATPase subunit C	AT1G12840.1	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) 	LOC_Os05g51530.2	"vacuolar ATP synthase subunit C, putative, expressed"	Medtr7g096730.1	V-ATPase subunit C 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	"GO:0033180|""proton-transporting V-type ATPase, V1 domain"""
PtpAffx.11482.2.A1_a_at	A	A1TS	POPTR_0019s08050	POPTR_0019s08050 (11)	scaffold_19:9402694-9403371(-) (11)	NA	NA	NA	AT5G16490.1	ROP-interactive CRIB motif-containing protein 4 	LOC_Os03g63060.1	"P21-Rho-binding domain containing protein, putative, expressed"	Medtr7g021460.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114827.1.A1_at	A	A1TS	POPTR_0030s00320	POPTR_0030s00320 (11)	scaffold_30:99677-100540(-) (11)	NA	Q3T090	Pre-rRNA-processing protein TSR2 homolog	AT5G27990.1	"Pre-rRNA-processing protein TSR2, conserved region "	LOC_Os08g39820.1	"pre-rRNA-processing protein TSR2, putative, expressed"	Medtr8g047520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11483.1.A1_at	A	A1TS	POPTR_0005s08950	POPTR_0005s08950 (11)	scaffold_5:6274857-6275107(-) (11)	NA	Q9SJ20	Ribonucleoside-diphosphate reductase large subunit	AT2G21790.1	ribonucleotide reductase 1 	LOC_Os06g07210.1	"ribonucleoside-diphosphate reductase large subunit, putative, expressed"	Medtr4g141590.1	"Ribonucleotide reductase R1 subunit, N-terminal; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0055114|oxidation reduction	GO:0005524|ATP binding||GO:0004748|ribonucleoside-diphosphate reductase activity	GO:0005971|ribonucleoside-diphosphate reductase complex
PtpAffx.114834.1.A1_at	A	A1TS	POPTR_0014s12730	POPTR_0014s12730 (11)	scaffold_14:9366686-9367214(-) (11)	NA	Q38796	Homeobox protein LUMINIDEPENDENS	AT4G02560.2	Homeodomain-like superfamily protein 	LOC_Os01g70810.1	"homeobox domain containing protein, expressed"	Medtr7g130110.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114836.1.A1_at	A	A1TS	POPTR_0014s16180	POPTR_0014s16180 (11)	scaffold_14:12295145-12295649(+) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os07g32412.2	"transposon protein, putative, unclassified, expressed"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114845.1.A1_at	A	A1TS	POPTR_0006s22750	POPTR_0006s22750 (10)	scaffold_6:21674616-21675075(+) (10)	NA	NA	NA	AT3G52610.1	unknown protein; Has 68 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g64256.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr7g127740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114847.1.A1_at	A	A1TS	POPTR_0001s28820	POPTR_0001s28820 (11)	scaffold_1:27609388-27610907(-) (11)	NA	NA	NA	AT3G14750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). 	LOC_Os03g60360.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr5g080930.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114848.1.A1_at	A	A1TS	POPTR_0010s14520	POPTR_0010s14520 (11)	scaffold_10:14088389-14088951(-) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT1G26230.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.11485.3.A1_x_at	A	A1TS	POPTR_0019s08500	POPTR_0019s08500 (11)	scaffold_19:10020192-10021615(-) (11)	NA	P49206	40S ribosomal protein S26-1	AT2G40590.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.1	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.11485.4.A1_x_at	A	A1TS	POPTR_0013s09160	POPTR_0013s09160 (11)	scaffold_13:8737174-8738406(+) (11)	NA	P49206	40S ribosomal protein S26-1	AT2G40590.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.1	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.11485.6.A1_x_at	A	A1TS	POPTR_0013s09160	POPTR_0013s09160 (11)	scaffold_13:8737172-8738260(+) (11)	NA	P49206	40S ribosomal protein S26-1	AT2G40590.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.1	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.11485.8.S1_at	A	A1TS	POPTR_0015s11400	POPTR_0015s11400 (11)	scaffold_15:11979282-11979769(+) (11)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os01g70100.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.11485.9.A1_at	A	A1MS	POPTR_0013s09160	POPTR_0013s09160 (11)	scaffold_13:8737220-8737298(+) (11)	NA	P49206	40S ribosomal protein S26-1	AT2G40590.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.1	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.114850.1.A1_at	A	A1TS	POPTR_0006s27990	POPTR_0006s27990 (11)	scaffold_6:25862349-25862743(+) (11)	NA	P59583	Probable WRKY transcription factor 32	AT4G30935.1	WRKY DNA-binding protein 32 	LOC_Os08g17400.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr8g145380.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.114861.1.A1_s_at	A	A1TS	POPTR_0015s01110	POPTR_0015s01110 (11)	scaffold_15:679858-680331(+) (11)	NA	Q7YR39	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	AT1G32490.1	RNA helicase family protein 	LOC_Os08g24760.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.114876.1.A1_at	A	A1MS	POPTR_0004s04380	POPTR_0004s04380 (11)	scaffold_4:3137959-3139161(+) (11)//scaffold_4:3138036-3138113(+) (9)	NA	Q9M0Y8	Vesicle-fusing ATPase	AT4G04910.1	AAA-type ATPase family protein 	LOC_Os05g44310.1	"vesicle-fusing ATPase, putative, expressed"	AC233659_3.1	AAA ATPase AC233659.1 11110-14927 E EGN_Mt090430 200	NA	GO:0005524|ATP binding	NA
PtpAffx.114878.1.A1_at	A	A1TS	POPTR_0018s10830	POPTR_0018s10830 (11)	scaffold_18:11705774-11705982(-) (11)	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os09g25850.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.114878.1.A1_s_at	A	A1TS	POPTR_0018s10830	POPTR_0018s10830 (11)	scaffold_18:11705821-11706569(-) (11)	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os09g25850.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.11488.1.S1_at	A	A1TS	POPTR_0018s03160	POPTR_0018s03160 (11)	scaffold_18:2802516-2804543(+) (11)	NA	Q8K0H5	Transcription initiation factor TFIID subunit 10	AT4G31720.1	TBP-associated factor II 15 	LOC_Os09g26180.1	"transcription initiation factor TFIID subunit 10, putative, expressed"	Medtr7g092270.1	"Transcription initiation factor TFIID, 23-30 kDa subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity	GO:0005634|nucleus
PtpAffx.114887.1.S1_at	A	A1TS	POPTR_0007s14270	POPTR_0007s14270 (11)	scaffold_7:14109794-14112585(+) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT5G10490.1	MSCS-like 2 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.1149.1.A1_s_at	A	A1TS	POPTR_0017s01180	POPTR_0017s01180 (11)	scaffold_17:841295-841465(-) (11)	NA	Q9LSJ3	Putative F-box/LRR-repeat protein At3g28410	AT3G28410.1	F-box/RNI-like superfamily protein 	NA	NA	Medtr8g021310.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114905.1.A1_at	A	A1TS	POPTR_0013s05610	POPTR_0013s05610 (11)	scaffold_13:4008324-4008858(+) (11)	NA	P69781	GATA transcription factor 12	AT5G25830.1	GATA transcription factor 12 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr7g100310.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.11491.1.S1_a_at	A	A2TS	POPTR_0004s06160	POPTR_0011s06770 (11)//POPTR_0004s06160 (11)	scaffold_11:7425751-7425841(-) (11)//scaffold_4:4880778-4880868(+) (11)	NA	Q8LFP7	Aquaporin NIP1-2	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr2g021470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.11491.1.S1_at	A	A1TS	POPTR_0004s06160	POPTR_0004s06160 (11)	scaffold_4:4880331-4881737(+) (11)	NA	Q8LFP7	Aquaporin NIP1-2	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr2g021470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.11491.2.A1_a_at	A	A1TS	POPTR_0011s06770	POPTR_0011s06770 (11)	scaffold_11:7425312-7425465(-) (11)	NA	Q8LFP7	Aquaporin NIP1-2	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr4g136200.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.11491.2.A1_at	A	A1TS	POPTR_0011s06770	POPTR_0011s06770 (10)	scaffold_11:7424947-7425278(-) (10)	NA	Q8LFP7	Aquaporin NIP1-2	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr4g136200.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.114924.1.A1_s_at	A	A1TS	POPTR_0002s10110	POPTR_0002s10110 (11)	scaffold_2:7273549-7274294(+) (11)	NA	Q9M0S5	"Isoamylase 3, chloroplastic"	AT4G09020.1	isoamylase 3 	LOC_Os09g29404.3	"glycogen operon protein glgX, putative, expressed"	Medtr3g150300.1	"Alpha amylase, catalytic region; Pullulanase, type I; ; ; "	GO:0005975|carbohydrate metabolic process	"GO:0043169|cation binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.114927.1.A1_at	A	A1TS	POPTR_0001s14660	POPTR_0001s14660 (11)	scaffold_1:11544718-11544838(-) (11)	POPTR_0001s14620 (6)	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.11493.1.S1_at	A	A1TS	POPTR_0019s03180	POPTR_0019s03180 (10)	scaffold_19:3194884-3195336(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114932.1.A1_at	A	A1TS	POPTR_0014s07590	POPTR_0014s07590 (11)	scaffold_14:5703260-5703750(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034860.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.114932.2.S1_at	A	A1TS	POPTR_0002s15770	POPTR_0002s15770 (9)	scaffold_2:11763628-11764172(+) (9)//scaffold_2:11777594-11788322(+) (9)	POPTR_0002s15820 (6)	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034860.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.114935.1.A1_at	A	A2TS	POPTR_0009s03970	POPTR_0009s03970 (11)//POPTR_1357s00200 (10)	scaffold_1357:1429-1812(-) (10)//scaffold_9:4544375-4544751(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G46620.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11494.1.S1_at	A	A1TS	POPTR_0001s22600	POPTR_0001s22600 (11)	scaffold_1:21500624-21501093(-) (11)	NA	NA	NA	AT3G44380.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os08g44410.1	"harpin-induced protein 1 domain containing protein, expressed"	NA	NA	GO:0009269|response to desiccation	NA	NA
PtpAffx.11499.1.A1_s_at	A	A1TS	POPTR_0003s00910	POPTR_0003s00910 (11)	scaffold_3:736547-736793(+) (11)	NA	NA	NA	AT4G24265.1	unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11499.2.A1_at	A	A1TA	POPTR_0003s00910	POPTR_0003s00910 (9)	scaffold_3:736412-736942(-) (11)	NA	NA	NA	AT4G24265.1	unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11499.3.A1_at	A	A1TS	POPTR_0014s09970	POPTR_0014s09970 (11)	scaffold_14:7475596-7476104(-) (11)	NA	Q91XJ0	Calcium-responsive transcription coactivator	AT4G00850.1	GRF1-interacting factor 3 	LOC_Os12g31350.1	"SSXT protein, putative, expressed"	Medtr1g094100.1	SSXT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11499.5.A1_at	A	A1MS	POPTR_0014s09970	POPTR_0014s09970 (9)	scaffold_14:7476327-7476819(-) (9)	NA	Q91XJ0	Calcium-responsive transcription coactivator	AT4G00850.1	GRF1-interacting factor 3 	LOC_Os12g31350.1	"SSXT protein, putative, expressed"	Medtr1g094100.1	SSXT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114990.1.A1_at	A	A1TS	POPTR_0005s28020	POPTR_0005s28020 (11)	scaffold_5:25423357-25423822(-) (11)	NA	NA	NA	AT1G20990.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os09g31980.1	"DC1 domain-containing protein, putative"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114999.1.A1_at	A	A1TS	POPTR_0003s09150	POPTR_0003s09150 (10)	scaffold_3:10468148-10468646(-) (11)	NA	NA	NA	AT1G32690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35200.1); Has 45 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g030040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1150.1.A1_s_at	A	A1TS	POPTR_0002s09330	POPTR_0002s09330 (11)	scaffold_2:6626823-6627295(-) (11)	NA	P78820	Acetyl-CoA carboxylase	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
PtpAffx.115001.1.A1_at	A	A1TS	POPTR_0008s19310	POPTR_0008s19310 (11)	scaffold_8:13263612-13263775(-) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.11501.1.A1_at	A	A1TS	POPTR_0016s05260	POPTR_0016s05260 (11)	scaffold_16:3199031-3199266(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115018.1.A1_at	A	A1TS	POPTR_0014s12610	POPTR_0014s12610 (11)	scaffold_14:9289795-9291676(+) (11)	NA	Q92685	Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase	AT2G47760.1	asparagine-linked glycosylation 3 	LOC_Os01g07720.4	"dolichyl-P-Man Man-PP-dolichyl mannosyltransferase, putative, expressed"	Medtr7g130400.1	ALG3 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.11503.1.S1_at	A	A1TS	POPTR_0007s14290	POPTR_0007s14290 (11)	scaffold_7:14120934-14123059(-) (11)	NA	Q8VZB2	3-hydroxyacyl-CoA dehydratase PASTICCINO 2	AT5G10480.1	"Protein-tyrosine phosphatase-like, PTPLA "	LOC_Os04g20280.2	expressed protein	Medtr4g080360.1	"Protein tyrosine phosphatase-like protein, PTPLA "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115041.1.A1_at	A	A1TS	POPTR_0016s14390	POPTR_0016s14390 (10)	scaffold_16:13619082-13619640(+) (11)	NA	NA	NA	AT3G51580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). 	NA	NA	Medtr7g080400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11505.1.S1_at	A	A1TS	POPTR_0015s13110	POPTR_0015s13110 (11)	scaffold_15:13203045-13203560(+) (11)	NA	NA	NA	AT5G23760.1	Copper transport protein family 	LOC_Os10g36200.1	"heavy metal-associated domain containing protein, expressed"	AC235674_17.1	"heavy-metal-associated domain-containing protein, putative AC235674.1 87926-88304 E EGN_Mt090430 200"	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.115051.1.A1_at	A	A1TS	POPTR_0009s05470	POPTR_0009s05470 (11)	scaffold_9:5574002-5575067(+) (11)	NA	NA	NA	AT1G50450.1	Saccharopine dehydrogenase  	LOC_Os12g04260.1	"astaxanthin synthase KC28, putative"	Medtr4g104000.1	"Peptidase, cysteine peptidase active site; Saccharopine dehydrogenase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115064.1.A1_at	A	A1TS	POPTR_0009s16130	POPTR_0009s16130 (11)	scaffold_9:12334391-12334800(-) (11)	NA	Q40588	L-ascorbate oxidase	AT5G21105.1	Plant L-ascorbate oxidase 	LOC_Os06g37080.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.115086.1.A1_at	A	A1TS	POPTR_0014s07550	POPTR_0014s07550 (11)	scaffold_14:5673200-5674507(+) (11)	NA	Q5R4E0	Methionine adenosyltransferase 2 subunit beta	AT4G00560.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g57990.1	"methionine adenosyltransferase regulatory beta subunit-related, putative, expressed"	Medtr8g034380.1	dTDP-4-dehydrorhamnose reductase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.115091.1.A1_at	A	A1TS	POPTR_0007s04250	POPTR_0007s04250 (10)	scaffold_7:2569549-2570088(-) (10)	NA	O49255	NAC domain-containing protein 29	AT5G64530.1	xylem NAC domain 1 	LOC_Os02g34970.1	"no apical meristem protein, putative, expressed"	Medtr4g142900.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.115098.1.A1_at	A	A1TS	POPTR_0002s06950	POPTR_0002s06950 (11)	scaffold_2:4692349-4692994(-) (11)	NA	Q8S3U9	Exocyst complex component 2	AT1G21170.1	Exocyst complex component SEC5 	LOC_Os04g34450.1	expressed protein	Medtr3g009450.1	"Exocyst complex component 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1151.1.A1_at	A	A1MS	POPTR_0001s47530	POPTR_0001s47530 (9)	scaffold_1:47687390-47687727(+) (10)	NA	P45816	SEC14 cytosolic factor	AT1G55690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os08g25310.1	"phosphatidylinositol transfer, putative, expressed"	Medtr3g016810.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115100.1.A1_at	A	A1TS	POPTR_0013s15130	POPTR_0013s15130 (11)	scaffold_13:15178288-15178794(+) (11)	NA	NA	NA	AT2G30395.1	ovate family protein 17 	LOC_Os05g26210.1	"ATOFP17/OFP17, putative"	Medtr5g083020.1	"ATOFP17/OFP17, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115106.1.A1_at	A	A1TS	POPTR_0001s44520	POPTR_0001s44520 (11)	scaffold_1:44912604-44913875(-) (11)	NA	Q9LJU2	Protein disulfide-isomerase 5-3	AT3G20560.1	PDI-like 5-3 	LOC_Os07g34030.1	"OsPDIL5-4  protein disulfide isomerase PDIL5-4, expressed"	Medtr4g110800.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.115107.1.A1_at	A	A1MS	POPTR_0006s04870	POPTR_0006s04870 (10)	scaffold_6:3396139-3396553(-) (10)	NA	O81644	Villin-2	AT2G41740.1	villin 2 	LOC_Os03g24220.1	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
PtpAffx.115109.1.A1_at	A	A1TS	POPTR_0010s01790	POPTR_0010s01790 (11)	scaffold_10:1963283-1963760(+) (11)	NA	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11511.1.S1_at	A	A1TS	POPTR_0003s14640	POPTR_0003s14640 (11)	scaffold_3:14660775-14661155(+) (11)	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11511.2.S1_s_at	A	A1TS	POPTR_0001s11330	POPTR_0001s11330 (11)	scaffold_1:8771659-8771922(+) (11)	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115113.1.A1_at	A	A1MA	POPTR_0006s10590	POPTR_0006s10590 (11)	scaffold_6:7923703-7924153(+) (11)	NA	NA	NA	AT5G01710.1	methyltransferases 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115115.1.A1_at	A	A1TS	POPTR_0016s06240	POPTR_0016s06240 (11)	scaffold_16:4181669-4182374(-) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT1G55310.2	SC35-like splicing factor 33 	LOC_Os03g25770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.11512.2.A1_a_at	A	A1TS	POPTR_0010s07460	POPTR_0010s07460 (11)	scaffold_10:8515708-8515954(+) (11)	NA	NA	NA	AT5G05210.1	Surfeit locus protein 6 	LOC_Os05g30880.1	"nucleolar matrix protein-related, putative, expressed"	Medtr5g012880.2	Surfeit locus 6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11512.3.A1_at	A	A1TS	POPTR_0008s17340	POPTR_0008s17340 (11)	scaffold_8:11632629-11633076(-) (11)	NA	NA	NA	AT5G05210.1	Surfeit locus protein 6 	LOC_Os05g30880.1	"nucleolar matrix protein-related, putative, expressed"	Medtr5g012880.2	Surfeit locus 6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115135.1.A1_at	A	A1TS	POPTR_0008s03870	POPTR_0008s03870 (11)	scaffold_8:2108404-2108921(+) (11)	NA	NA	NA	AT3G54800.2	Pleckstrin homology (PH) and lipid-binding START domains-containing protein 	LOC_Os10g33930.1	"DUF1336 domain containing protein, expressed"	Medtr1g120740.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115136.1.A1_at	A	A1MA	POPTR_0014s09430	POPTR_0014s09430 (11)	scaffold_14:7010255-7010775(+) (11)	NA	NA	NA	AT2G45360.1	Protein of unknown function (DUF1442) 	LOC_Os08g01910.1	expressed protein	Medtr6g069960.1	Protein of unknown function DUF1442 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115137.1.A1_at	A	A1TS	POPTR_0013s11780	POPTR_0013s11780 (9)	scaffold_13:12428738-12428885(-) (9)	NA	NA	NA	AT4G09620.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g62240.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11514.1.A1_a_at	A	A1TS	POPTR_0002s07610	POPTR_0002s07610 (11)	scaffold_2:5205970-5206389(+) (11)	NA	Q68FJ8	TOM1-like protein 2	AT1G21380.1	Target of Myb protein 1 	LOC_Os11g09329.1	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.115155.1.S1_at	A	A1TS	POPTR_0003s13160	POPTR_0003s13160 (9)	scaffold_3:13568469-13568843(+) (9)	NA	A7PZL3	Probable polygalacturonase	AT3G61490.3	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.115155.2.S1_a_at	A	A1TS	POPTR_0001s09790	POPTR_0001s09790 (11)	scaffold_1:7532588-7533477(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT4G23500.1	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.115155.2.S1_at	A	A1TS	POPTR_0001s09790	POPTR_0001s09790 (10)	scaffold_1:7533482-7534206(+) (10)	NA	A7PZL3	Probable polygalacturonase	AT4G23500.1	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.11516.1.A1_s_at	A	A1TS	POPTR_0001s11010	POPTR_0001s11010 (11)	scaffold_1:8540424-8540842(+) (11)	NA	Q03685	Luminal-binding protein 5	AT5G42020.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11516.2.A1_at	A	A1TS	POPTR_0003s14360	POPTR_0003s14360 (11)	scaffold_3:14451483-14451597(+) (11)	NA	Q03685	Luminal-binding protein 5	AT5G42020.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115160.1.A1_at	A	A1TS	POPTR_0014s07270	POPTR_0014s07270 (9)	scaffold_14:5492312-5492672(-) (9)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.115164.1.A1_at	A	A1TS	POPTR_0019s11040	POPTR_0019s11040 (9)	scaffold_19:12460358-12460533(+) (9)	NA	Q8VHT8	Transcription factor IIIA	AT1G72050.2	transcription factor IIIA 	LOC_Os02g02424.1	"ZOS2-02 - C2H2 zinc finger protein, expressed"	Medtr3g005750.1	"Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11517.1.S1_at	A	A1TS	POPTR_0006s19180	POPTR_0006s19180 (11)	scaffold_6:18162573-18164146(-) (11)	NA	NA	NA	AT2G23810.1	tetraspanin8 	LOC_Os09g25760.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.115171.1.S1_at	A	A1TS	POPTR_0009s17080	POPTR_0009s17080 (11)	scaffold_9:12860674-12862194(+) (11)	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT4G38200.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g106900.1	"Protein of unknown function DUF1981, SEC7 associated "	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.115182.1.S1_at	A	A1TS	POPTR_0002s19860	POPTR_0002s19860 (9)	scaffold_2:15794380-15796326(+) (9)	NA	NA	NA	AT4G34140.3	D111/G-patch domain-containing protein 	LOC_Os01g07540.1	"G-patch domain containing protein, expressed"	Medtr3g114530.1	D111/G-patch 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.115188.1.A1_at	A	A1TS	POPTR_0644s00210	POPTR_0644s00210 (11)	scaffold_644:7075-7842(+) (11)	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os07g14580.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11519.1.A1_at	A	A1TS	POPTR_0010s00950	POPTR_0010s00950 (9)	scaffold_10:700355-700583(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115191.1.A1_at	A	A1TS	POPTR_0003s14040	POPTR_0003s14040 (10)	scaffold_3:14234834-14236030(+) (10)	NA	NA	NA	AT4G23895.2	Pleckstrin homology (PH) domain-containing protein 	LOC_Os05g51710.1	"pleckstrin homology domain-containing protein-related taxo, putative, expressed"	Medtr5g009340.1	"pleckstrin homology domain-containing protein-related taxo, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1152.2.A1_s_at	A	A1TS	POPTR_0006s10320	POPTR_0006s10320 (11)	scaffold_6:7733997-7734713(+) (11)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.1152.4.S1_at	A	A1TS	POPTR_0016s12720	POPTR_0016s12720 (10)	scaffold_16:12098902-12099001(+) (10)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.115220.1.S1_s_at	A	A1TS	POPTR_0002s25890	POPTR_0002s25890 (11)	scaffold_2:22898875-22900243(-) (11)	NA	Q4KLU2	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115227.1.A1_at	A	A1TS	POPTR_0001s33230	POPTR_0001s33230 (10)	scaffold_1:31430730-31432097(-) (10)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os04g32370.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g094460.1	"Uncharacterized protein At2g33490, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11523.2.A1_a_at	A	A2TS	POPTR_0005s12990	POPTR_0278s00210 (9)//POPTR_0005s12990 (9)	scaffold_278:30908-32128(-) (9)//scaffold_5:9821379-9822599(-) (9)	NA	Q8W4F0	Protein DA1-related 1	AT4G36860.1	LIM domain-containing protein 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr5g018830.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.115233.1.S1_s_at	A	A1TS	POPTR_0001s05180	POPTR_0001s05180 (11)	scaffold_1:3968699-3969594(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115235.1.A1_at	A	A1TS	POPTR_0014s07400	POPTR_0014s07400 (11)	scaffold_14:5577955-5578548(+) (11)	NA	Q93ZQ5	SPX domain-containing membrane protein At4g22990	AT4G22990.2	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os02g45520.1	"uncharacterized membrane protein, putative, expressed"	Medtr7g084180.1	"Beta-lactamase, class A; SPX, N-terminal; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115238.1.A1_at	A	A1TS	POPTR_0001s32850	POPTR_0001s32850 (11)	scaffold_1:31138132-31138500(-) (11)	NA	NA	NA	AT4G14010.1	ralf-like 32 	NA	NA	Medtr4g132720.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115239.1.A1_at	A	A1TS	POPTR_0005s24900	POPTR_0005s24900 (10)	scaffold_5:23320494-23321236(+) (10)	NA	Q9CXF4	TBC1 domain family member 15	AT4G28550.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os02g56570.1	"TBC domain containing protein, expressed"	Medtr2g097180.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.11524.2.S1_a_at	A	A1TS	POPTR_0012s00920	POPTR_0012s00920 (11)	scaffold_12:589848-592801(-) (11)	NA	P68209	"Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial"	AT5G08300.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11524.3.S1_a_at	A	A2TS	POPTR_0012s00920	POPTR_0012s03310 (11)//POPTR_0012s00920 (11)	scaffold_12:590319-591176(-) (11)//scaffold_12:2629521-2630546(+) (11)	NA	P68209	"Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial"	AT5G08300.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.115254.1.A1_at	A	A1TS	POPTR_0005s07640	POPTR_0005s07640 (11)	scaffold_5:5232082-5232505(+) (11)	NA	O24454	Ubiquitin carboxyl-terminal hydrolase 3	AT4G39910.1	ubiquitin-specific protease 3 	LOC_Os04g37950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr3g101810.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.11527.1.S1_at	A	A1TS	POPTR_0005s20930	POPTR_0005s20930 (11)	scaffold_5:20042230-20042673(-) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT1G43850.2	SEUSS transcriptional co-regulator 	LOC_Os11g10070.1	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115286.1.A1_at	A	A1TS	POPTR_0016s10820	POPTR_0016s10820 (11)	scaffold_16:9184762-9185897(+) (11)	NA	Q99728	BRCA1-associated RING domain protein 1	AT3G09890.1	Ankyrin repeat family protein 	LOC_Os03g05260.1	"ankyrin repeat domain containing protein, expressed"	Medtr2g055950.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115292.1.S1_at	A	A1TS	POPTR_0002s03250	POPTR_0002s03250 (11)	scaffold_2:2001305-2002180(+) (11)	NA	P25519	GTP-binding protein hflX	AT5G57960.1	"GTP-binding protein, HflX "	LOC_Os11g38020.1	"GTPase of unknown function domain containing protein, putative, expressed"	AC235668_12.1	Small GTP-binding protein domain AC235668.1 41853-35303 E EGN_Mt090430 200	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.11530.1.A1_at	A	A1TS	POPTR_0006s07390	POPTR_0006s07390 (11)	scaffold_6:5324734-5325039(-) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009880.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.115316.1.S1_at	A	A1TS	POPTR_0004s15700	POPTR_0004s15700 (11)	scaffold_4:16277182-16277634(+) (11)	NA	NA	NA	AT5G66580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os06g41940.1	expressed protein	Medtr5g018720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115333.1.A1_s_at	A	A1TS	POPTR_0005s04820	POPTR_0005s04820 (11)	scaffold_5:3230338-3233352(+) (11)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11535.1.A1_s_at	A	A6TS	POPTR_0013s12510	POPTR_0013s12510 (9)//POPTR_0013s12670 (9)//POPTR_0151s00220 (9)//POPTR_0013s12560 (9)//POPTR_0151s00210 (9)//POPTR_0013s12600 (9)	scaffold_13:13169604-13169750(-) (9)//scaffold_13:13198794-13198930(-) (9)//scaffold_13:13245253-13245389(-) (9)//scaffold_13:13302373-13302509(-) (9)//scaffold_13:13326364-13326500(-) (9)//scaffold_13:13364475-13364611(-) (9)//scaffold_151:22815-22951(+) (9)//scaffold_151:37078-37229(+) (9)	POPTR_0013s12620 (8)//POPTR_0013s12580 (8)	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g19420.1	"O-methyltransferase, putative, expressed"	Medtr5g082640.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.11535.3.S1_at	A	A1TS	POPTR_0012s14560	POPTR_0012s14560 (11)	scaffold_12:14415483-14415559(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.11535.3.S1_s_at	A	A1TS	POPTR_0012s14560	POPTR_0012s14560 (11)	scaffold_12:14415367-14415432(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.11535.4.S1_at	A	A1TA	POPTR_0013s12510	POPTR_0013s12510 (9)	scaffold_13:13169783-13169901(+) (9)	POPTR_0151s00220 (8)//POPTR_0151s00210 (7)//POPTR_0013s12640 (6)	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g19420.1	"O-methyltransferase, putative, expressed"	Medtr5g082640.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.11535.6.S1_at	A	A1TS	POPTR_0006s19030	POPTR_0006s19030 (11)	scaffold_6:17866303-17866800(-) (11)	NA	Q9ZV51	RING-H2 finger protein ATL56	AT2G18670.1	RING/U-box superfamily protein 	LOC_Os02g50990.3	"RING-H2 finger protein ATL1Q, putative, expressed"	Medtr8g127780.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115352.1.S1_at	A	A1TS	POPTR_0014s17800	POPTR_0014s17800 (9)	scaffold_14:14126690-14127488(-) (9)	NA	NA	NA	AT3G17668.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os04g49940.1	expressed protein	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.11536.1.A1_at	A	A1TS	POPTR_0018s10140	POPTR_0018s10140 (11)	scaffold_18:11122532-11122884(-) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G57480.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g26260.1	"AAA-type ATPase family protein, putative, expressed"	Medtr8g128800.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.11537.1.S1_s_at	A	A1TS	POPTR_0001s23870	POPTR_0001s23870 (11)	scaffold_1:23246423-23246542(-) (11)	NA	NA	NA	AT2G31930.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g080170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115389.1.S1_s_at	A	A1TS	POPTR_0008s08940	POPTR_0008s08940 (11)	scaffold_8:5551735-5552989(+) (11)	NA	Q6P4K8	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	AT1G26550.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g24540.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g090170.1	PpiC-type peptidyl-prolyl cis-trans isomerase 	NA	GO:0016853|isomerase activity	NA
PtpAffx.11539.1.A1_at	A	A1TS	POPTR_0002s01870	POPTR_0002s01870 (11)	scaffold_2:997311-997713(-) (11)	NA	Q0JIL1	Probable nucleoredoxin 2	AT1G60420.1	DC1 domain-containing protein 	LOC_Os01g58194.1	"protein disulfide isomerase, putative, expressed"	Medtr3g157120.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin fold "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.1154.1.A1_at	A	A1TS	POPTR_0001s39170	POPTR_0001s39170 (11)	scaffold_1:38367020-38367514(-) (11)	NA	NA	NA	AT3G14750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). 	LOC_Os07g32450.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g071550.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115455.1.S1_s_at	A	A1TS	POPTR_0013s06980	POPTR_0013s06980 (11)	scaffold_13:5667824-5669931(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g26974.1	expressed protein	Medtr2g034570.1	Prefoldin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115474.1.S1_s_at	A	A1TS	POPTR_0007s13280	POPTR_0007s13280 (11)	scaffold_7:13400267-13401659(+) (11)	NA	A4FLF6	UPF0261 protein SACE_5696	AT5G66420.2	"LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 1232 Blast hits to 1230 proteins in 311 species: Archae - 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). "	LOC_Os06g27800.1	"tm-1GCR237 protein, putative, expressed"	Medtr8g092870.1	"Glycoside hydrolase, family 5; Carbamoyl-phosphate synthase L chain, ATP-binding; Protein of unknown function UPF0261 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115482.1.S1_at	A	A1TS	POPTR_0001s21340	POPTR_0001s21340 (11)	scaffold_1:19756251-19756687(+) (11)	NA	NA	NA	AT5G64170.2	dentin sialophosphoprotein-related 	LOC_Os03g27019.6	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115482.1.S1_s_at	A	A1TS	POPTR_0001s21340	POPTR_0001s21340 (11)	scaffold_1:19756004-19756798(+) (11)	NA	NA	NA	AT5G64170.2	dentin sialophosphoprotein-related 	LOC_Os03g27019.6	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115510.1.S1_s_at	A	A1TS	POPTR_0015s14420	POPTR_0015s14420 (9)	scaffold_15:14032201-14033298(+) (11)	NA	NA	NA	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	Medtr8g090220.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.11552.1.A1_at	A	A1TS	POPTR_0007s00700	POPTR_0007s00700 (11)	scaffold_7:350905-351766(-) (11)	NA	Q55141	Acetolactate synthase small subunit	AT2G31810.1	ACT domain-containing small subunit of acetolactate synthase protein 	LOC_Os02g39570.4	"ACT domain containing protein, expressed"	Medtr4g137170.1	"Acetolactate synthase, small subunit "	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.115524.1.S1_at	A	A1MS	POPTR_0008s05280	POPTR_0008s05280 (10)	scaffold_8:3058993-3059167(-) (10)	NA	NA	NA	AT3G12590.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g74310.1	expressed protein	Medtr7g025560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11555.1.S1_at	A	A1TS	POPTR_0008s05520	POPTR_0008s05520 (9)	scaffold_8:3199446-3199702(+) (9)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.2	OBF-binding protein 3 	LOC_Os03g60630.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.11556.1.A1_at	A	A1TS	POPTR_0015s13670	POPTR_0015s13670 (11)	scaffold_15:13520943-13521226(+) (11)	NA	NA	NA	AT4G18372.1	Small nuclear ribonucleoprotein family protein 	LOC_Os06g46390.1	"LSM domain containing protein, expressed"	Medtr2g024370.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115578.1.S1_at	A	A1TS	POPTR_0002s16880	POPTR_0002s16880 (11)	scaffold_2:12626278-12627487(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT3G61610.1	Galactose mutarotase-like superfamily protein 	LOC_Os01g46950.1	"aldose 1-epimerase, putative, expressed"	Medtr4g121890.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.11559.1.A1_at	A	A1TS	POPTR_0009s08790	POPTR_0009s08790 (11)	scaffold_9:7954579-7954956(+) (11)	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.11559.3.A1_s_at	A	A2TS	POPTR_0001s29620	POPTR_0001s29620 (11)//POPTR_0009s08790 (11)	scaffold_1:28285385-28285655(+) (11)//scaffold_9:7953691-7953961(+) (11)	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.1156.1.S1_at	A	A1TS	POPTR_0011s05210	POPTR_0011s05210 (10)	scaffold_11:5097619-5098804(+) (10)	NA	Q9S9U0	Callose synthase 11	AT4G04970.1	glucan synthase-like 1 	LOC_Os01g55040.1	"1,3-beta-glucan synthase component, putative, expressed"	Medtr4g107950.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.115602.1.S1_at	A	A1TS	POPTR_0014s02800	POPTR_0014s02800 (11)	scaffold_14:2327537-2328319(+) (11)	NA	Q6NY52	THO complex subunit 5 homolog	AT5G42920.2	"THO complex,  subunit 5 "	LOC_Os02g52820.1	"cold-induced protein, putative, expressed"	Medtr3g147710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115617.1.S1_at	A	A1TS	POPTR_0016s12390	POPTR_0016s12390 (11)	scaffold_16:11741021-11741475(+) (11)	NA	Q92797	Symplekin	AT5G01400.1	HEAT repeat-containing protein 	LOC_Os07g49320.1	"HEAT repeat family protein, putative, expressed"	AC235756_7.1	"Symplekin, related AC235756.1 62684-53654 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11563.1.A1_at	A	A1TS	POPTR_0008s01030	POPTR_0008s01030 (11)	scaffold_8:488376-489371(+) (11)	NA	O80397	Mitogen-activated protein kinase kinase 4	AT1G51660.1	mitogen-activated protein kinase kinase 4 	LOC_Os06g09180.1	"OsMKK5 - putative MAPKK based on amino acid sequence homology, expressed"	Medtr4g023250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11563.2.A1_a_at	A	A1TS	POPTR_0010s25570	POPTR_0010s25570 (11)	scaffold_10:21185626-21185887(-) (11)	NA	O80397	Mitogen-activated protein kinase kinase 4	AT1G51660.1	mitogen-activated protein kinase kinase 4 	LOC_Os06g09180.1	"OsMKK5 - putative MAPKK based on amino acid sequence homology, expressed"	Medtr4g023250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.115633.1.S1_at	A	A1TS	POPTR_0017s00410	POPTR_0017s00410 (11)	scaffold_17:131428-131886(-) (11)	NA	Q9M1Y3	F-box/ankyrin repeat protein SKIP35	AT3G59910.1	Ankyrin repeat family protein 	LOC_Os11g14180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115647.1.S1_at	A	A1TS	POPTR_0003s16720	POPTR_0003s16720 (11)	scaffold_3:16249652-16250517(-) (11)	NA	Q9C509	Sphingosine-1-phosphate lyase	AT1G27980.1	dihydrosphingosine phosphate lyase 	LOC_Os01g01080.1	"decarboxylase, putative, expressed"	Medtr7g022250.1	Pyridoxal-dependent decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11565.1.A1_at	A	A1TS	POPTR_0011s14150	POPTR_0011s14150 (11)	scaffold_11:16681125-16681424(+) (11)	NA	O13759	RNA-binding post-transcriptional regulator csx1	AT5G54900.1	RNA-binding protein 45A 	LOC_Os03g37270.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.11566.1.A1_at	A	A1TS	POPTR_0003s14840	POPTR_0003s14840 (10)	scaffold_3:14810552-14810866(+) (10)	NA	A4IG72	Transforming growth factor-beta receptor-associated protein 1 homolog	AT1G22860.1	Vacuolar sorting protein 39 	LOC_Os05g01360.1	expressed protein	NA	NA	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	NA
PtpAffx.115683.1.S1_at	A	A1TS	POPTR_0001s36250	POPTR_0001s36250 (11)	scaffold_1:34787169-34788191(+) (11)	NA	NA	NA	AT3G01720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). 	LOC_Os01g67750.1	expressed protein	AC145328_11.1	hypothetical protein AC145328.23 57989-50900 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11571.1.S1_at	A	A1TS	POPTR_0005s08610	POPTR_0005s08610 (11)	scaffold_5:5990769-5991974(+) (11)	NA	NA	NA	AT2G21970.1	stress enhanced protein 2 	LOC_Os04g54630.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11573.1.A1_at	A	A1TS	POPTR_0002s09150	POPTR_0002s09150 (10)	scaffold_2:6481531-6482467(-) (10)	NA	NA	NA	AT4G08540.1	DNA-directed RNA polymerase II protein 	LOC_Os07g43322.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11576.1.A1_at	A	A1MS	POPTR_0006s26120	POPTR_0006s26120 (9)	scaffold_6:24389290-24389578(-) (9)	NA	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os01g08550.1	"aminoacyl-tRNA synthetase, putative, expressed"	Medtr3g135760.1	"aminoacyl-tRNA synthetase family, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115782.1.S1_at	A	A1TS	POPTR_0008s16060	POPTR_0008s16060 (10)	scaffold_8:10724188-10726185(+) (10)	POPTR_0010s08910 (7)	Q75LD5	Probable ion channel CASTOR	AT5G43745.1	Protein of unknown function (DUF1012) 	LOC_Os03g06720.1	expressed protein	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11586.1.A1_s_at	A	A1TS	POPTR_0002s10400	POPTR_0002s10400 (11)	scaffold_2:7491473-7492982(-) (11)	NA	P48348	14-3-3-like protein GF14 kappa	AT5G65430.1	general regulatory factor 8 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g149020.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.115882.1.S1_s_at	A	A1TS	POPTR_0013s06050	POPTR_0013s06050 (11)	scaffold_13:4477269-4478147(+) (11)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT3G03770.2	Leucine-rich repeat protein kinase family protein 	LOC_Os07g07230.2	"protein kinase, putative, expressed"	Medtr7g103210.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.115895.1.S1_s_at	A	A1TS	POPTR_0015s06930	POPTR_0015s06930 (10)	scaffold_15:7959923-7961188(-) (11)	NA	P09394	Glycerophosphoryl diester phosphodiesterase	AT1G74210.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os01g55780.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr3g076710.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.1159.1.S1_at	A	A1TS	POPTR_0003s08480	POPTR_0003s08480 (11)	scaffold_3:9903722-9904230(+) (11)	NA	Q8GT41	Putative invertase inhibitor	AT5G38610.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os02g01300.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr8g009110.1	"Putative invertase inhibitor precursor, "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.115917.1.S1_s_at	A	A1TS	POPTR_0001s25810	POPTR_0001s25810 (11)	scaffold_1:24867094-24868487(+) (11)	NA	Q6NQ88	Protein DAMAGED DNA-BINDING 2	AT5G58760.1	damaged DNA binding 2 	LOC_Os01g04870.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g078770.1	WD40-like 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.11592.1.A1_at	A	A1TS	POPTR_0004s22700	POPTR_0004s22700 (11)	scaffold_4:21550883-21551257(-) (11)	NA	Q5REY4	"28S ribosomal protein S16, mitochondrial"	AT5G56940.1	Ribosomal protein S16 family protein 	LOC_Os09g32274.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.11592.1.A1_s_at	A	A1TS	POPTR_0004s22700	POPTR_0004s22700 (11)	scaffold_4:21551001-21552859(-) (11)	NA	Q5REY4	"28S ribosomal protein S16, mitochondrial"	AT5G56940.1	Ribosomal protein S16 family protein 	LOC_Os09g32274.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.115926.1.S1_at	A	A1TS	POPTR_0018s08840	POPTR_0018s08840 (9)	scaffold_18:9766233-9766607(+) (9)	NA	Q8S9D1	Pentatricopeptide repeat-containing protein At5g21222	AT5G21222.1	protein kinase family protein 	LOC_Os01g12810.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g009410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11593.1.S1_at	A	A1TS	POPTR_0003s11630	POPTR_0003s11630 (11)	scaffold_3:12404630-12405061(-) (11)	NA	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os08g02490.1	"AT hook motif domain containing protein, expressed"	Medtr8g106590.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11593.3.A1_at	A	A1MA	POPTR_0001s08110	POPTR_0001s08110 (10)	scaffold_1:6176302-6176774(+) (11)	NA	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os08g02490.1	"AT hook motif domain containing protein, expressed"	Medtr8g106590.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115945.1.S1_s_at	A	A1TS	POPTR_0014s08180	POPTR_0014s08180 (11)	scaffold_14:6073188-6073287(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.2	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11595.1.A1_a_at	A	A1TS	POPTR_0011s16630	POPTR_0011s16630 (11)	scaffold_11:18437169-18437796(-) (11)	NA	Q9C5U8	"Histidinol dehydrogenase, chloroplastic"	AT5G63890.2	histidinol dehydrogenase 	LOC_Os01g13190.1	"histidinol dehydrogenase, chloroplast precursor, putative, expressed"	Medtr2g130010.1	Histidinol dehydrogenase 	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004399|histidinol dehydrogenase activity||GO:0051287|NAD or NADH binding||GO:0008270|zinc ion binding	NA
PtpAffx.11595.2.A1_s_at	A	A1TS	POPTR_0001s46960	POPTR_0001s46960 (11)	scaffold_1:47301122-47301223(-) (11)	NA	Q9C5U8	"Histidinol dehydrogenase, chloroplastic"	AT5G63890.2	histidinol dehydrogenase 	LOC_Os01g13190.1	"histidinol dehydrogenase, chloroplast precursor, putative, expressed"	Medtr2g130010.1	Histidinol dehydrogenase 	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004399|histidinol dehydrogenase activity||GO:0051287|NAD or NADH binding||GO:0008270|zinc ion binding	NA
PtpAffx.115954.2.A1_a_at	A	A1TS	POPTR_0009s04220	POPTR_0009s04220 (11)	scaffold_9:4702080-4702260(-) (11)	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT1G07420.1	sterol 4-alpha-methyl-oxidase 2-1 	LOC_Os07g01150.3	"fatty acid hydroxylase, putative, expressed"	Medtr5g036470.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.115954.2.A1_at	A	A1MS	POPTR_0009s04220	POPTR_0009s04220 (10)	scaffold_9:4702327-4702449(-) (10)	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT1G07420.1	sterol 4-alpha-methyl-oxidase 2-1 	LOC_Os07g01150.3	"fatty acid hydroxylase, putative, expressed"	Medtr5g036470.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.11597.1.A1_at	A	A1TS	POPTR_0004s19380	POPTR_0004s19380 (11)	scaffold_4:19232623-19233796(-) (11)	NA	P48279	Uncharacterized protein ycf39	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g44000.1	"uncharacterized protein ycf39, putative, expressed"	Medtr3g164000.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.115988.1.S1_at	A	A1TS	POPTR_0002s24050	POPTR_0002s24050 (11)	scaffold_2:21516111-21516629(-) (11)	NA	NA	NA	AT3G07510.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g09930.1	expressed protein	Medtr7g046740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115988.2.S1_at	A	A1MS	POPTR_0014s17440	POPTR_0014s17440 (11)	scaffold_14:13612952-13613005(+) (11)	NA	NA	NA	AT3G07510.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g09930.1	expressed protein	Medtr7g046740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115988.2.S1_s_at	A	A1TS	POPTR_0014s17440	POPTR_0014s17440 (11)	scaffold_14:13613048-13613359(+) (11)	NA	NA	NA	AT3G07510.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g09930.1	expressed protein	Medtr7g046740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1160.1.A1_at	A	A1TS	POPTR_0231s00250	POPTR_0231s00250 (11)	scaffold_231:43504-44772(+) (11)	NA	C7N914	ATP-dependent zinc metalloprotease FtsH	AT5G64580.1	AAA-type ATPase family protein 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr3g143610.1	"Flagellar basal body rod protein; AAA ATPase, central region; Peptidase M41, FtsH extracellular "	NA	GO:0005524|ATP binding	NA
PtpAffx.116026.1.S1_at	A	A1TS	POPTR_0002s20260	POPTR_0002s20260 (11)	scaffold_2:16210695-16211956(+) (11)	NA	O81122	Ethylene receptor	AT2G40940.1	ethylene response sensor 1 	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.116041.1.S1_at	A	A1TS	POPTR_0018s01040	POPTR_0018s01040 (11)	scaffold_18:957610-957985(+) (11)	NA	NA	NA	AT2G25670.2	BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink). 	LOC_Os01g08410.1	"early fruit mRNA, putative, expressed"	Medtr3g136050.1	"M355, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11605.1.A1_at	A	A1TS	POPTR_0905s00195	POPTR_0905s00195 (10)	scaffold_905:1039-1340(+) (10)	POPTR_0019s06060 (6)	NA	NA	AT5G35930.1	AMP-dependent synthetase and ligase family protein 	LOC_Os06g02160.4	"AMP-binding enzyme family protein, expressed"	Medtr8g150990.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like; Quinonprotein alcohol dehydrogenase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116088.1.S1_at	A	A1TS	POPTR_0015s12410	POPTR_0015s12410 (10)	scaffold_15:12662070-12662721(+) (10)	NA	NA	NA	AT5G45170.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os12g43520.1	"cbbY protein-related, putative, expressed"	AC235753_15.1	"HAD-superfamily hydrolase subfamily IA, variant 3 AC235753.1 88087-84841 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1161.1.A1_at	A	A1TS	POPTR_0011s06010	POPTR_0011s06010 (11)	scaffold_11:6031469-6031888(+) (11)	NA	O04681	Pathogenesis-related genes transcriptional activator PTI5	AT3G23240.1	ethylene response factor 1 	LOC_Os02g43790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr2g018530.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.116115.1.S1_at	A	A1TS	POPTR_0005s24040	POPTR_0005s24040 (10)	scaffold_5:22692984-22693176(-) (10)	NA	Q9M9Y5	Probable galacturonosyltransferase 6	AT1G06780.1	galacturonosyltransferase 6 	LOC_Os11g37980.1	"GAUT2/LGT2, putative, expressed"	Medtr2g033340.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.11613.1.A1_a_at	A	A1TA	POPTR_0002s22950	POPTR_0002s22950 (10)	scaffold_2:20180978-20181016(-) (10)//scaffold_59:8880-8918(+) (11)//scaffold_8:18753593-18753631(-) (11)//scaffold_8:18783929-18783967(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11615.1.A1_at	A	A1TS	POPTR_0014s06580	POPTR_0014s06580 (11)	scaffold_14:4998773-5001209(-) (11)	NA	O81322	LOB domain-containing protein 31	AT4G00210.1	LOB domain-containing protein 31 	LOC_Os03g14270.1	"DUF260 domain containing protein, putative"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116155.1.S1_at	A	A1TA	POPTR_0008s06140	POPTR_0008s06140 (11)	scaffold_8:3633082-3633518(+) (11)	NA	Q9M331	Probable peptide/nitrate transporter At3g53960	AT3G53960.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.116158.1.S1_at	A	A1TS	POPTR_0019s06140	POPTR_0019s06140 (11)	scaffold_19:6711214-6711306(+) (11)	NA	Q94AA9	"Xylogalacturonan beta-1,3-xylosyltransferase"	AT3G45400.1	exostosin family protein 	LOC_Os03g20850.1	"exostosin family domain containing protein, expressed"	Medtr7g103930.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.116166.1.S1_at	A	A1TS	POPTR_0002s12480	POPTR_0002s12480 (11)	scaffold_2:9259365-9259399(+) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.116166.1.S1_s_at	A	A1TS	POPTR_0002s12480	POPTR_0002s12480 (11)	scaffold_2:9259442-9259931(+) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.116172.1.S1_s_at	A	A1TS	POPTR_0008s00490	POPTR_0008s00490 (11)	scaffold_8:196944-196983(-) (11)	NA	Q9LJX4	Pumilio homolog 5	AT3G20250.1	pumilio 5 	LOC_Os08g40830.3	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.11619.1.S1_at	A	A1TS	POPTR_0017s01650	POPTR_0017s01650 (11)	scaffold_17:1177944-1179070(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT4G25680.1	PPPDE putative thiol peptidase family protein 	LOC_Os10g38970.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr4g092240.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116198.1.S1_s_at	A	A1TS	POPTR_0007s08600	POPTR_0007s08600 (11)	scaffold_7:7460646-7460988(+) (11)	NA	Q7Z569	BRCA1-associated protein	AT2G26000.2	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g09060.1	"BRCA1-associated protein, putative, expressed"	Medtr2g127260.1	"Zinc finger, UBP-type; Zinc finger, RING-type; BRCA1-associated 2 "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.11621.1.A1_s_at	A	A1TS	POPTR_0015s14220	POPTR_0015s14220 (11)	scaffold_15:13907600-13907878(-) (11)	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11623.1.A1_a_at	A	A2TS	POPTR_0001s31510	POPTR_0001s31510 (11)//POPTR_0019s01790 (11)	scaffold_1:29812584-29812686(+) (11)//scaffold_19:1549324-1549429(+) (11)	NA	NA	NA	AT5G09850.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os12g06850.1	"transcription elongation factor protein, putative, expressed"	Medtr3g144310.1	"Transcription factors TFIIS, elongin A, CRSP70, conserved "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.11623.1.A1_at	A	A1TS	POPTR_0001s31510	POPTR_0001s31510 (9)	scaffold_1:29812399-29813035(+) (9)	NA	NA	NA	AT5G09850.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os12g06850.1	"transcription elongation factor protein, putative, expressed"	Medtr3g144310.1	"Transcription factors TFIIS, elongin A, CRSP70, conserved "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.11623.2.S1_at	A	A1TS	POPTR_0019s01790	POPTR_0019s01790 (9)	scaffold_19:1548853-1549513(+) (9)	NA	NA	NA	AT5G09850.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os12g06850.1	"transcription elongation factor protein, putative, expressed"	Medtr3g144310.1	"Transcription factors TFIIS, elongin A, CRSP70, conserved "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.116237.1.A1_a_at	A	A1TS	POPTR_0007s04960	POPTR_0007s04960 (11)	scaffold_7:3155945-3156346(-) (11)	NA	Q9LX93	E3 ubiquitin-protein ligase RING1	AT5G10380.1	RING/U-box superfamily protein 	LOC_Os04g37740.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g120960.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11625.1.A1_at	A	A1TA	POPTR_0010s09970	POPTR_0010s09970 (9)	scaffold_10:10563744-10564113(+) (10)	NA	Q9LUW0	"Lipoxygenase 5, chloroplastic"	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr1g132610.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.11626.1.A1_a_at	A	A1TS	POPTR_0006s06970	POPTR_0006s06970 (11)	scaffold_6:5019238-5019776(-) (11)	POPTR_0727s00200 (7)	Q10E50	Phospholipase A2 homolog 3	AT2G06925.1	Phospholipase A2 family protein 	LOC_Os03g50030.1	"phospholipase A2, putative, expressed"	Medtr6g092420.1	Phospholipase A2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11627.1.A1_at	A	A1MA	POPTR_0006s09820	POPTR_0006s09820 (11)	scaffold_1:44788158-44788197(+) (11)//scaffold_10:2317582-2317621(-) (11)//scaffold_11:18417488-18417527(+) (11)//scaffold_12:489181-489220(-) (11)//scaffold_15:221656-221695(-) (11)//scaffold_16:13854507-13854546(-) (11)//scaffold_18:80564-87442(+) (11)//scaffold_2:5399781-5399820(+) (11)//scaffold_2566:3442-3481(+) (11)//scaffold_31:177347-177386(-) (11)//scaffold_5:4097561-4097600(+) (11)//scaffold_6:7212170-7212209(+) (11)//scaffold_8:12859839-12859878(-) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.116292.1.S1_at	A	A1TS	POPTR_0015s12270	POPTR_0015s12270 (11)	scaffold_15:12601710-12602695(+) (11)	NA	NA	NA	AT5G51150.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os07g31260.1	expressed protein	Medtr1g087060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116293.1.S1_s_at	A	A1TS	POPTR_0011s10870	POPTR_0011s10870 (11)	scaffold_11:13421006-13425137(-) (11)	NA	Q9FQ08	ATP-dependent DNA helicase 2 subunit KU70	AT1G16970.1	KU70 homolog 	LOC_Os07g08729.1	"ATP-dependent DNA helicase 2 subunit 1, putative, expressed"	Medtr1g147380.1	"Ku70/Ku80, N-terminal alpha/beta "	GO:0006303|double-strand break repair via nonhomologous end joining||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004003|ATP-dependent DNA helicase activity	GO:0005634|nucleus
PtpAffx.116306.1.S1_at	A	A1TS	POPTR_0018s09900	POPTR_0018s09900 (10)	scaffold_18:10966930-10967502(-) (10)	NA	Q6PQQ3	AP2-like ethylene-responsive transcription factor AIL5	AT5G57390.1	AINTEGUMENTA-like 5 	LOC_Os04g55970.2	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g129150.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.116307.1.S1_at	A	A1TS	POPTR_0019s08180	POPTR_0019s08180 (11)	scaffold_19:9653920-9656742(-) (11)	NA	O94808	Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2	AT3G24090.1	glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases 	LOC_Os12g03720.1	"glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed"	Medtr7g089900.1	"Glucosamine-fructose-6-phosphate aminotransferase, isomerising "	GO:0005975|carbohydrate metabolic process	GO:0005529|sugar binding	NA
PtpAffx.116308.1.S1_at	A	A1TS	POPTR_0005s22820	POPTR_0005s22820 (9)	scaffold_5:21709838-21710645(+) (9)	NA	Q28D01	WD repeat-containing protein 26	AT5G08560.2	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116313.1.S1_s_at	A	A1TS	POPTR_0002s13790	POPTR_0002s13790 (11)	scaffold_2:10217898-10218234(+) (11)	POPTR_0014s04540 (6)	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11632.1.A1_at	A	A1TS	POPTR_0005s08530	POPTR_0005s08530 (11)	scaffold_5:5940437-5940911(+) (11)	NA	Q9LV85	Protein CPR-5	AT5G64930.1	"CPR5 protein, putative "	LOC_Os02g53070.1	"HYS1, putative, expressed"	Medtr3g144950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11632.2.S1_at	A	A1TS	POPTR_0007s06490	POPTR_0007s06490 (11)	scaffold_7:4863300-4863827(+) (11)	NA	Q9LV85	Protein CPR-5	AT5G64930.1	"CPR5 protein, putative "	LOC_Os02g53070.1	"HYS1, putative, expressed"	Medtr3g144950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116322.1.S1_at	A	A1TS	POPTR_0007s15090	POPTR_0007s15090 (11)	scaffold_7:14730504-14731201(-) (11)	NA	Q9C5X9	Histone acetyltransferase HAC1	AT1G79000.1	histone acetyltransferase of the CBP family 1 	LOC_Os02g04490.1	"histone acetyltransferase HAC1, putative, expressed"	Medtr4g163230.1	"Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.116325.1.S1_s_at	A	A1TS	POPTR_0001s25360	POPTR_0001s25360 (11)	scaffold_1:24514229-24514586(+) (11)	POPTR_0009s04440 (7)	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT5G59010.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11633.1.A1_at	A	A1TS	POPTR_0010s06320	POPTR_0010s06320 (11)	scaffold_10:7722565-7723210(-) (11)	NA	P31170	"25.3 kDa heat shock protein, chloroplastic"	AT4G27670.1	heat shock protein 21 	LOC_Os05g23140.1	"retrotransposon protein, putative, LINE subclass, expressed"	Medtr3g103040.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116345.1.S1_at	A	A1TS	POPTR_0008s17710	POPTR_0008s17710 (10)	scaffold_8:11908333-11909221(+) (10)	NA	O48700	U-box domain-containing protein 6	AT1G24330.1	ARM repeat superfamily protein 	LOC_Os01g67500.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr3g103550.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.116348.1.S1_s_at	A	A1TS	POPTR_0015s12710	POPTR_0015s12710 (11)	scaffold_15:12939943-12941957(+) (11)	NA	Q5RCV3	Nibrin	AT3G02680.1	nijmegen breakage syndrome 1 	LOC_Os10g34580.2	"FHA domain containing protein, putative, expressed"	Medtr5g084040.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11635.1.S1_at	A	A1TS	POPTR_0001s16830	POPTR_0001s16830 (11)	scaffold_1:13653603-13654229(+) (11)	NA	P74007	"Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase"	AT1G54130.1	RELA/SPOT homolog 3 	LOC_Os09g27050.1	"HD domain containing protein, putative, expressed"	Medtr8g025050.1	"Metal-dependent phosphohydrolase, HD subdomain "	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.11635.2.S1_at	A	A1TS	POPTR_0003s06420	POPTR_0003s06420 (9)	scaffold_3:7892465-7892968(-) (9)	NA	P74007	"Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase"	AT1G54130.1	RELA/SPOT homolog 3 	LOC_Os08g35620.1	"HD domain containing protein, putative, expressed"	Medtr8g025050.1	"Metal-dependent phosphohydrolase, HD subdomain "	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.116385.1.S1_s_at	A	A2TS	POPTR_0002s13790	POPTR_0014s04540 (11)//POPTR_0002s13790 (11)	scaffold_14:3498316-3502272(+) (11)//scaffold_2:10219812-10224570(+) (11)	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116385.2.S1_at	A	A1TS	POPTR_0002s13790	POPTR_0002s13790 (9)	scaffold_2:10222570-10222866(+) (9)	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11639.1.A1_at	A	A2TS	POPTR_0004s18670	POPTR_0004s18670 (11)//POPTR_0004s18690 (11)	scaffold_4:18476501-18476994(-) (11)//scaffold_4:18484080-18484575(-) (11)	NA	Q9FIC8	Germin-like protein subfamily 1 member 16	AT5G39130.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr1g093090.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.116400.1.S1_at	A	A1TS	POPTR_0014s05520	POPTR_0014s05520 (11)	scaffold_14:4140676-4140859(-) (11)	NA	NA	NA	AT2G44970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g01930.3	"lipase-related, putative, expressed"	Medtr8g006030.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116404.1.S1_s_at	A	A1TS	POPTR_0004s24390	POPTR_0004s24390 (11)	scaffold_4:23074931-23076239(+) (11)	NA	NA	NA	AT2G35610.1	xyloglucanase 113 	LOC_Os03g38930.1	expressed protein	Medtr8g086800.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116443.1.S1_at	A	A1TS	POPTR_0006s12740	POPTR_0006s12740 (10)	scaffold_6:9888914-9889432(+) (10)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.11646.1.S1_at	A	A1TS	POPTR_0010s07720	POPTR_0010s07720 (11)	scaffold_10:8705274-8707335(+) (11)	NA	Q03389	Eukaryotic translation initiation factor 4E-2	AT5G35620.1	Eukaryotic initiation factor 4E protein 	LOC_Os10g32970.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr1g065250.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
PtpAffx.116461.1.S1_at	A	A1TS	POPTR_0002s16070	POPTR_0002s16070 (11)	scaffold_2:11958566-11959713(-) (11)	NA	O80831	Beta-amylase 7	AT2G45880.1	beta-amylase 7 	LOC_Os09g39570.1	"beta-amylase, putative, expressed"	Medtr5g026370.1	"Glycoside hydrolase, family 14; BZR1, transcriptional repressor "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.11649.1.A1_at	A	A1MS	POPTR_0002s16840	POPTR_0002s16840 (11)	scaffold_2:12596835-12597191(+) (11)	NA	Q6TDP4	Kelch-like protein 17	AT3G61600.2	POZ/BTB containin G-protein 1 	LOC_Os06g31100.1	"E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.1165.1.A1_at	A	A1TS	POPTR_0008s11670	POPTR_0008s11670 (11)	scaffold_19:14740130-14740598(+) (10)//scaffold_8:7450275-7451706(-) (10)	NA	Q9C6M1	UPF0016 protein 4	AT1G25520.1	Uncharacterized protein family (UPF0016) 	LOC_Os08g33630.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	AC233660_16.1	Protein of unknown function UPF0016 AC233660.2 65616-67701 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.1165.2.S1_a_at	A	A3TS	POPTR_0008s11670	POPTR_0008s11670 (11)//POPTR_0019s13860 (11)//POPTR_0010s13850 (11)	scaffold_19:14740039-14740213(+) (11)	NA	Q9C6M1	UPF0016 protein 4	AT1G25520.1	Uncharacterized protein family (UPF0016) 	LOC_Os08g33630.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	AC233660_16.1	Protein of unknown function UPF0016 AC233660.2 65616-67701 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.1165.2.S1_at	A	A1TS	POPTR_0010s13850	POPTR_0010s13850 (10)	scaffold_10:13570549-13572150(+) (10)	NA	Q9C6M1	UPF0016 protein 4	AT1G25520.1	Uncharacterized protein family (UPF0016) 	LOC_Os08g33630.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	AC233660_16.1	Protein of unknown function UPF0016 AC233660.2 65616-67701 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.11651.1.A1_a_at	A	A1TS	POPTR_0010s02540	POPTR_0010s02540 (11)	scaffold_10:2991899-2992219(+) (11)	NA	NA	NA	AT4G15790.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). 	LOC_Os12g35620.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11651.2.S1_a_at	A	A1TS	POPTR_0010s02540	POPTR_0010s02540 (9)	scaffold_10:2989972-2990220(+) (9)	NA	NA	NA	AT4G15790.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). 	LOC_Os12g35620.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11652.1.S1_at	A	A1TS	POPTR_0014s06680	POPTR_0014s06680 (11)	scaffold_14:5074335-5074792(+) (11)	NA	Q9FVC8	"Dihydrodipicolinate synthase 2, chloroplastic"	AT2G45440.1	dihydrodipicolinate synthase 	LOC_Os04g18200.1	"dihydrodipicolinate synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016829|lyase activity	NA
PtpAffx.116527.1.S1_at	A	A1TS	POPTR_0002s18750	POPTR_0002s18750 (10)	scaffold_2:14618478-14618937(+) (10)	NA	Q9M1R4	Auxin-responsive protein IAA30	AT3G62100.1	indole-3-acetic acid inducible 30 	LOC_Os02g49160.1	"OsIAA8 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g133620.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.11653.2.S1_a_at	A	A1TS	POPTR_0010s12670	POPTR_0010s12670 (11)	scaffold_10:12669335-12670328(-) (11)	POPTR_0008s12560 (7)	P43394	Fruit protein pKIWI502	AT1G15140.1	FAD/NAD(P)-binding oxidoreductase 	LOC_Os02g22260.1	"fruit protein PKIWI502, putative, expressed"	Medtr1g137840.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.11657.1.S1_at	A	A1TS	POPTR_0006s22750	POPTR_0006s22750 (9)	scaffold_6:21670290-21670848(+) (11)	NA	NA	NA	AT3G52610.1	unknown protein; Has 68 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g64256.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr7g127740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11658.1.A1_at	A	A1TS	POPTR_0010s02480	POPTR_0010s02480 (11)	scaffold_10:2865114-2867199(-) (11)	NA	Q9HC21	Mitochondrial thiamine pyrophosphate carrier	AT5G48970.1	Mitochondrial substrate carrier family protein 	LOC_Os01g70800.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g138870.1	Mitochondrial carrier protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116587.1.S1_at	A	A1TS	POPTR_0005s23660	POPTR_0005s23660 (10)	scaffold_5:22384300-22384710(+) (10)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT4G02670.1	indeterminate(ID)-domain 12 	LOC_Os03g10140.1	"ZOS3-04 - C2H2 zinc finger protein, expressed"	Medtr8g018830.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.116591.1.A1_at	A	A1TA	POPTR_0004s13910	POPTR_0004s13910 (10)	scaffold_4:14293550-14293967(-) (10)	NA	Q39128	Potassium channel KAT1	AT5G46240.1	potassium channel in Arabidopsis thaliana 1 	LOC_Os02g14840.1	"potassium channel KAT1, putative, expressed"	Medtr2g024740.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.11664.1.S1_at	A	A1TS	POPTR_0010s17540	POPTR_0010s17540 (11)	scaffold_10:16097190-16097731(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT1G26800.1	RING/U-box superfamily protein 	LOC_Os03g20870.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g044570.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11664.2.S1_at	A	A1TS	POPTR_0008s08690	POPTR_0008s08690 (11)	scaffold_8:5370456-5370882(+) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT1G26800.1	RING/U-box superfamily protein 	LOC_Os06g01200.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g044570.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11665.1.A1_at	A	A1TS	POPTR_0005s25050	POPTR_0005s25050 (10)	scaffold_5:23402274-23402643(-) (10)	NA	O48671	Protein RER1B	AT2G21600.1	endoplasmatic reticulum retrieval protein 1B 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
PtpAffx.116667.1.A1_at	A	A1TS	POPTR_0014s18590	POPTR_0014s18590 (10)	scaffold_14:15929250-15929933(+) (10)	NA	Q28D01	WD repeat-containing protein 26	AT5G43920.1	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11668.1.A1_at	A	A1TS	POPTR_0019s07730	POPTR_0019s07730 (11)	scaffold_19:8861598-8863148(+) (11)	NA	Q16629	Serine/arginine-rich splicing factor 7	AT1G23860.3	RS-containing zinc finger protein 21 	LOC_Os02g54770.2	"RNA recognition motif containing protein, expressed"	Medtr3g133170.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.116693.1.S1_s_at	A	A1TS	POPTR_0007s06790	POPTR_0007s06790 (11)	scaffold_7:5146210-5148288(-) (11)	NA	Q9XIK4	UPF0202 protein At1g10490	AT1G10490.1	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) 	LOC_Os12g07300.1	"N-acetyltransferase 10, putative, expressed"	Medtr2g033580.1	Region of unknown function DUF1726 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116697.1.A1_at	A	A1TS	POPTR_0001s33690	POPTR_0001s33690 (10)	scaffold_1:31888223-31888671(+) (10)	NA	Q7ZZ00	Zinc finger protein 511	AT5G14140.1	zinc ion binding;nucleic acid binding;zinc ion binding 	LOC_Os11g30484.1	"ZOS11-03 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.116699.1.S1_at	A	A1TS	POPTR_0010s20720	POPTR_0010s20720 (9)	scaffold_10:18201282-18202059(-) (9)	NA	P49598	Protein phosphatase 2C 37	AT3G11410.1	protein phosphatase 2CA 	LOC_Os01g62760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11670.1.S1_a_at	A	A2TS	POPTR_0002s01250	POPTR_0002s01250 (9)//POPTR_0005s27120 (9)	scaffold_2:656415-656778(+) (9)//scaffold_5:24914092-24914449(-) (9)	NA	Q6NPN9	WD repeat-containing protein DWA2	AT1G20540.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g44010.5	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11670.1.S1_at	A	A1TS	POPTR_0005s27120	POPTR_0005s27120 (11)	scaffold_5:24913383-24914394(-) (11)	NA	Q6NPN9	WD repeat-containing protein DWA2	AT1G20540.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g44010.5	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11670.2.A1_a_at	A	A1TS	POPTR_0002s01250	POPTR_0002s01250 (11)	scaffold_2:656583-657499(+) (11)	NA	Q6NPN9	WD repeat-containing protein DWA2	AT1G20540.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g44010.5	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116716.1.A1_at	A	A1TS	POPTR_0006s12120	POPTR_0006s12120 (11)	scaffold_6:9285242-9286184(+) (11)	NA	Q92621	Nuclear pore complex protein Nup205	AT5G51200.1	Protein of unknown function (DUF3414) 	LOC_Os02g10790.1	expressed protein	Medtr7g118310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116726.1.S1_at	A	A1TS	POPTR_0009s05380	POPTR_0009s05380 (11)	scaffold_9:5488204-5491034(-) (11)	NA	Q9SIU2	Nuclear cap-binding protein subunit 1	AT2G13540.1	ARM repeat superfamily protein 	LOC_Os03g22570.2	"MIF4G domain containing protein, putative, expressed"	Medtr7g096860.1	"Initiation factor eIF-4 gamma, middle; ; ; "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.116733.1.A1_s_at	A	A1TS	POPTR_0002s04670	POPTR_0002s04670 (11)	scaffold_2:2914898-2915039(-) (11)	NA	Q9AR19	Histone acetyltransferase GCN5	AT3G54610.1	histone acetyltransferase of the GNAT family 1 	LOC_Os10g28040.1	"histone acetyltransferase GCN5, putative, expressed"	Medtr8g074500.1	GCN5-related N-acetyltransferase; Bromodomain 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.116747.1.A1_at	A	A1TS	POPTR_0018s01080	POPTR_0018s01080 (9)	scaffold_18:994574-995105(-) (11)	NA	Q92576	PHD finger protein 3	AT5G25520.2	SPOC domain / Transcription elongation factor S-II protein 	LOC_Os02g11780.1	"transcription factor S-II, central domain containing protein, expressed"	Medtr3g136140.1	"Transcription elongation factor S-II, central region; SPOC "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
PtpAffx.1168.1.S1_at	A	A1TS	POPTR_0006s13640	POPTR_0006s13640 (11)	scaffold_6:10847654-10848348(-) (11)	POPTR_0006s13650 (8)	Q9SMZ4	Alpha-aminoadipic semialdehyde synthase	AT4G33150.2	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme 	LOC_Os02g54254.1	"saccharopine dehydrogenase, putative, expressed"	Medtr8g133370.1	"NAD(P) transhydrogenase, alpha subunit; Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme conserved region "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.116815.1.S1_at	A	A1TS	POPTR_0012s08910	POPTR_0012s08910 (10)	scaffold_12:9967204-9967414(-) (10)	NA	Q84JS6	Homeobox protein knotted-1-like 6	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os01g19694.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.11682.1.A1_at	A	A1TS	POPTR_0001s23950	POPTR_0001s23950 (11)	scaffold_1:23332991-23333680(-) (11)	NA	NA	NA	AT3G13510.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11682.1.A1_s_at	A	A1TS	POPTR_0001s23950	POPTR_0001s23950 (11)	scaffold_1:23332646-23333618(-) (11)	NA	NA	NA	AT3G13510.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11683.1.A1_at	A	A1TS	POPTR_0018s09890	POPTR_0018s09890 (10)	scaffold_18:10936413-10936955(-) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os08g12430.1	"VERNALIZATION-INSENSITIVE, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116857.1.S1_at	A	A1TS	POPTR_0003s14100	POPTR_0003s14100 (11)	scaffold_3:14277011-14277478(+) (11)	POPTR_0001s10720 (7)	Q680C0	GDSL esterase/lipase At4g10955	AT4G10955.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g18480.1	"lipase class 3 family protein, putative, expressed"	Medtr5g028450.1	"lipase class 3 family protein, putative "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.11687.1.A1_at	A	A1TS	POPTR_0006s29390	POPTR_0006s29390 (11)	scaffold_6:26760074-26760368(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os08g40880.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g133100.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.116885.1.S1_at	A	A1MS	POPTR_0006s14030	POPTR_0006s14030 (11)	scaffold_6:11300654-11300883(-) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT1G74960.3	fatty acid biosynthesis 1 	LOC_Os07g42420.1	"3-oxoacyl-synthase, putative, expressed"	Medtr8g132860.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116899.1.S1_at	A	A1TS	POPTR_0005s17110	POPTR_0005s17110 (11)	scaffold_5:14257476-14257931(+) (11)	NA	Q9S9Z7	Probable protein phosphatase 2C 10	AT1G34750.1	Protein phosphatase 2C family protein 	LOC_Os04g37904.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1169.13.S1_a_at	A	A1TS	POPTR_0007s13830	POPTR_0007s13830 (11)	scaffold_7:13851572-13851900(-) (11)	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT4G38960.1	B-box type zinc finger family protein 	LOC_Os09g35880.1	"B-box zinc finger family protein, putative, expressed"	Medtr5g021510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1169.2.S1_s_at	A	A1MS	POPTR_0010s23740	POPTR_0010s23740 (9)	scaffold_10:20227831-20228360(+) (11)	NA	P93354	Histone H2B	AT5G04440.1	Protein of unknown function (DUF1997) 	LOC_Os03g05320.2	expressed protein	Medtr1g068710.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.1169.5.A1_a_at	A	A1TS	POPTR_0008s10640	POPTR_0008s10640 (11)	scaffold_8:6674043-6675997(-) (11)	NA	Q32P73	DNA-directed RNA polymerase II subunit RPB9	AT3G16980.1	RNA polymerases M/15 Kd subunit 	LOC_Os12g37370.1	"DNA-directed RNA polymerase II subunit RPB9, putative, expressed"	Medtr2g038620.1	"DNA-directed RNA polymerase, subunit C11/M/9 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0003899|DNA-directed RNA polymerase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1169.6.A1_s_at	A	A1TS	POPTR_0008s03050	POPTR_0008s03050 (11)	scaffold_8:1601751-1602193(-) (11)	NA	Q9SI96	Histone H2B.3	AT2G28720.1	Histone superfamily protein 	LOC_Os08g38300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.1169.7.A1_x_at	A	A1TS	POPTR_0010s23770	POPTR_0010s23770 (11)	scaffold_10:20259643-20260147(-) (11)	NA	Q1S9I9	Probable histone H2B.1	AT3G45980.1	Histone superfamily protein 	LOC_Os08g38300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.11690.1.A1_at	A	A1TS	POPTR_0178s00200	POPTR_0178s00200 (11)	scaffold_178:2716-3058(+) (11)	NA	NA	NA	AT3G54500.2	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g31360.4	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11690.3.A1_a_at	A	A2TS	POPTR_0178s00200	POPTR_0178s00200 (11)//POPTR_0003s19860 (9)	scaffold_178:2373-2877(+) (11)//scaffold_178:26318-26799(+) (9)//scaffold_3:18482825-18483306(-) (11)//scaffold_3:18511165-18513795(-) (11)//scaffold_3:18578294-18578763(-) (11)	POPTR_0178s00220 (7)	NA	NA	AT3G54500.2	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g31360.4	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116900.1.S1_s_at	A	A1TS	POPTR_0016s05650	POPTR_0016s05650 (11)	scaffold_16:3578943-3579343(+) (11)	NA	O81644	Villin-2	AT2G41740.1	villin 2 	LOC_Os03g24220.2	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
PtpAffx.116902.1.S1_at	A	A1TS	POPTR_0003s04700	POPTR_0003s04700 (11)	scaffold_3:5675767-5681390(-) (11)	NA	NA	NA	AT1G71260.1	WHIRLY 2 	LOC_Os02g06370.1	"whirly transcription factor domain containing protein, expressed"	Medtr5g039580.1	ssDNA-binding transcriptional regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116905.1.A1_at	A	A1TS	POPTR_0001s41900	POPTR_0001s41900 (10)	scaffold_1:41606014-41606548(-) (10)	NA	Q13574	Diacylglycerol kinase zeta	AT2G20900.2	diacylglycerol kinase 5 	LOC_Os04g54200.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.11691.1.S1_at	A	A1MS	POPTR_0004s24060	POPTR_0004s24060 (11)	NA	POPTR_0006s28410 (7)	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.116932.1.S1_at	A	A1TS	POPTR_0016s01210	POPTR_0016s01210 (11)	scaffold_16:514654-515212(+) (11)//scaffold_16:527684-528117(-) (9)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr2g030170.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116935.1.S1_at	A	A2TS	POPTR_0001s10800	POPTR_0001s10800 (11)//POPTR_0003s14150 (10)	scaffold_1:8403724-8405448(+) (11)//scaffold_3:14296780-14298332(+) (11)	NA	Q93YV9	F-box protein SKIP8	AT4G10925.3	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os01g36940.1	"OsFBX13 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116936.1.S1_at	A	A1TS	POPTR_0019s07200	POPTR_0019s07200 (11)	scaffold_19:8056432-8056611(-) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT5G16730.1	Plant protein of unknown function (DUF827) 	LOC_Os05g02820.1	"protein transport protein-related, putative, expressed"	Medtr4g107430.1	"protein transport protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11696.1.S1_s_at	A	A1TS	POPTR_0016s12360	POPTR_0016s12360 (11)	scaffold_16:11704755-11705579(+) (11)	NA	NA	NA	AT5G01450.1	RING/U-box superfamily protein 	LOC_Os05g44550.1	"zinc finger family protein, putative"	Medtr1g023680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116969.1.S1_s_at	A	A1TS	POPTR_0005s00520	POPTR_0005s00520 (11)	scaffold_5:186342-188273(-) (11)	NA	Q9SJG2	Probable receptor-like protein kinase At2g42960	AT1G56720.3	Protein kinase superfamily protein 	LOC_Os01g21960.1	"serine/threonine-protein kinase, putative, expressed"	AC235094_15.1	"Serine/threonine protein kinase, active site AC235094.1 73772-69130 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11698.1.A1_at	A	A1TS	POPTR_0001s22740	POPTR_0001s22740 (11)	scaffold_1:21621138-21621573(-) (11)	NA	Q6ZQ58	La-related protein 1	AT5G21160.2	LA RNA-binding protein 	LOC_Os01g16110.2	"la domain containing protein, putative, expressed"	Medtr5g095250.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117004.1.S1_s_at	A	A1TS	POPTR_0003s03720	POPTR_0003s03720 (11)	scaffold_3:4401533-4402321(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19410.1	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117004.2.S1_a_at	A	A1TS	POPTR_0004s24210	POPTR_0004s24210 (11)	scaffold_4:22915750-22916281(-) (11)	NA	Q8R116	Protein notum homolog	AT5G45280.2	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117004.2.S1_at	A	A1TS	POPTR_0004s24210	POPTR_0004s24210 (11)	scaffold_4:22916429-22916527(-) (11)	NA	Q8R116	Protein notum homolog	AT5G45280.2	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11701.1.A1_at	A	A1TS	POPTR_0003s19160	POPTR_0003s19160 (9)	scaffold_3:17957293-17957463(+) (9)	NA	Q9ZVJ3	65-kDa microtubule-associated protein 5	AT2G38720.1	microtubule-associated protein 65-5 	LOC_Os05g33890.1	"microtubule associated protein, putative, expressed"	Medtr8g044460.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117017.1.S1_at	A	A2TS	POPTR_0006s27180	POPTR_0018s01840 (11)//POPTR_0006s27180 (11)	scaffold_18:1671356-1671604(+) (11)//scaffold_6:25162187-25162435(+) (11)	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT4G32250.3	Protein kinase superfamily protein 	LOC_Os06g43270.1	"protein kinase domain containing protein, expressed"	Medtr1g013990.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.117024.1.S1_s_at	A	A1TS	POPTR_0001s09660	POPTR_0001s09660 (11)	scaffold_1:7363017-7363578(-) (11)	NA	O81742	Beta-adaptin-like protein C	AT4G23460.1	Adaptin family protein 	LOC_Os03g23950.1	"adapitin protein, putative, expressed"	Medtr4g103980.1	"Adaptin, N-terminal; Alpha/gamma adaptin, C-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.117027.1.S1_a_at	A	A1TS	POPTR_0006s13440	POPTR_0006s13440 (11)	scaffold_6:10649166-10649733(-) (11)	NA	Q1PER6	"L-ascorbate peroxidase 2, cytosolic"	AT3G09640.2	ascorbate peroxidase 2 	LOC_Os07g49400.2	"OsAPx2 - Cytosolic Ascorbate Peroxidase encoding gene 4,5,6,8, expressed"	Medtr4g080090.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.11703.1.A1_at	A	A1TS	POPTR_0016s06990	POPTR_0016s06990 (11)	scaffold_16:4782038-4782629(+) (11)	NA	NA	NA	AT3G61370.1	Protein of unknown function (DUF3245) 	LOC_Os08g44540.1	expressed protein	Medtr4g145050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117043.1.S1_s_at	A	A1TS	POPTR_0001s05650	POPTR_0001s05650 (11)	scaffold_1:4369960-4370925(+) (11)	NA	Q9SH30	Putative copper-transporting ATPase 3	AT1G63440.1	heavy metal atpase 5 	LOC_Os02g10290.1	"copper-transporting ATPase, putative, expressed"	Medtr8g012740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.117056.1.S1_s_at	A	A1TS	POPTR_0009s03230	POPTR_0009s03230 (11)	scaffold_9:3921576-3922332(+) (11)	NA	O82598	Aquaporin TIP1-3	AT4G01470.1	tonoplast intrinsic protein 1;3 	LOC_Os01g74450.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.11710.1.A1_at	A	A1TS	POPTR_0003s03250	POPTR_0003s03250 (11)	scaffold_3:3660803-3661313(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.4	casein kinase II  beta chain 1 	LOC_Os10g41520.1	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
PtpAffx.117115.1.S1_at	A	A1TS	POPTR_0006s12510	POPTR_0006s12510 (9)	scaffold_6:9659898-9659930(-) (9)	NA	A9PHC5	S-adenosylmethionine synthase 4	AT2G36880.2	methionine adenosyltransferase 3 	LOC_Os01g18860.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.117115.1.S1_s_at	A	A1TS	POPTR_0006s12510	POPTR_0006s12510 (11)	scaffold_6:9659119-9659912(-) (11)	NA	A9PHC5	S-adenosylmethionine synthase 4	AT2G36880.2	methionine adenosyltransferase 3 	LOC_Os01g18860.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.117121.1.S1_s_at	A	A2TS	POPTR_0010s18320	POPTR_0010s18340 (11)//POPTR_0010s18320 (11)	scaffold_10:16607509-16608336(+) (11)//scaffold_10:16613227-16614049(+) (11)	NA	Q9KG32	Uncharacterized isomerase BH0283	AT4G02860.1	Phenazine biosynthesis PhzC/PhzF protein 	LOC_Os01g16146.1	"phenazine biosynthesis protein, putative, expressed"	Medtr1g086630.1	Phenazine biosynthesis PhzC/PhzF protein 	GO:0009058|biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.11716.1.A1_a_at	A	A1TS	POPTR_0003s07180	POPTR_0003s07180 (11)	scaffold_3:8777998-8778090(-) (11)	NA	O43670	Zinc finger protein 207	AT1G30970.1	zinc finger (C2H2 type) family protein 	LOC_Os09g38790.3	"ZOS9-19 - C2H2 zinc finger protein, expressed"	Medtr4g156140.1	"Zinc finger, BED-type predicted; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11716.1.A1_at	A	A1TS	POPTR_0003s07180	POPTR_0003s07180 (11)	scaffold_3:8779134-8779671(-) (11)	NA	O43670	Zinc finger protein 207	AT1G30970.1	zinc finger (C2H2 type) family protein 	LOC_Os09g38790.3	"ZOS9-19 - C2H2 zinc finger protein, expressed"	Medtr4g156140.1	"Zinc finger, BED-type predicted; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11716.2.S1_a_at	A	A1TS	POPTR_0001s16080	POPTR_0001s16080 (10)	scaffold_1:12889159-12889492(+) (10)	NA	O43670	Zinc finger protein 207	AT1G30970.1	zinc finger (C2H2 type) family protein 	LOC_Os09g38790.3	"ZOS9-19 - C2H2 zinc finger protein, expressed"	Medtr4g156140.1	"Zinc finger, BED-type predicted; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11716.4.A1_a_at	A	A1TS	POPTR_0003s07180	POPTR_0003s07180 (11)	scaffold_3:8777957-8778090(-) (11)	NA	O43670	Zinc finger protein 207	AT1G30970.1	zinc finger (C2H2 type) family protein 	LOC_Os09g38790.3	"ZOS9-19 - C2H2 zinc finger protein, expressed"	Medtr4g156140.1	"Zinc finger, BED-type predicted; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.117183.1.A1_a_at	A	A1TS	POPTR_0006s27900	POPTR_0006s27900 (11)	scaffold_6:25731959-25732127(+) (11)	NA	Q5VRH9	U-box domain-containing protein 12	AT4G31890.2	ARM repeat superfamily protein 	LOC_Os09g25000.1	"spotted leaf 11, putative, expressed"	Medtr3g138130.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117188.1.S1_s_at	A	A1TS	POPTR_0003s15650	POPTR_0003s15650 (11)	scaffold_3:15410596-15412483(+) (11)	POPTR_0001s12470 (6)	Q54V77	CTP synthase	AT1G30820.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr8g084050.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.117198.1.S1_at	A	A1TS	POPTR_0015s01610	POPTR_0015s01610 (10)	scaffold_15:1008520-1008668(-) (10)	NA	Q9M3B0	Probable pectinesterase/pectinesterase inhibitor 34	AT3G49220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g13320.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.1172.1.S1_at	A	A1TS	POPTR_0006s22780	POPTR_0006s22780 (11)	scaffold_6:21691762-21692211(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.1172.2.A1_at	A	A1TA	POPTR_0006s22780	POPTR_0006s22780 (11)	scaffold_6:21691617-21692149(-) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.1172.3.S1_a_at	A	A2TS	POPTR_0006s22780	POPTR_0016s07890 (11)//POPTR_0006s22780 (11)	scaffold_16:5718974-5719019(+) (11)//scaffold_6:21690875-21690920(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.11720.1.S1_at	A	A1TS	POPTR_0015s03450	POPTR_0015s03450 (11)	scaffold_15:3004875-3006459(-) (11)	NA	Q9S7P9	SNAP25 homologous protein SNAP33	AT5G61210.1	soluble N-ethylmaleimide-sensitive factor adaptor protein 33 	LOC_Os02g24080.5	"SNARE domain containing protein, putative, expressed"	Medtr8g025530.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117202.1.A1_at	A	A1TS	POPTR_0014s08130	POPTR_0014s08130 (11)	scaffold_14:6045900-6046368(+) (11)	NA	Q5XF03	Probable glycerol-3-phosphate acyltransferase 8	AT4G00400.1	glycerol-3-phosphate acyltransferase 8 	LOC_Os01g63580.1	"glycerol-3-phosphate acyltransferase, putative, expressed"	Medtr8g031940.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.11725.1.S1_at	A	A1TS	POPTR_0004s04650	POPTR_0004s04650 (11)	scaffold_4:3399875-3400134(-) (11)	NA	Q2T9J0	Peroxisomal leader peptide-processing protease	AT1G28320.1	protease-related 	LOC_Os05g41810.1	"OsDegp8 - Putative Deg protease homologue, expressed"	Medtr2g017690.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11726.1.A1_at	A	A1MS	POPTR_0010s17140	POPTR_0010s17140 (11)	scaffold_10:15866090-15866350(+) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11727.1.A1_at	A	A1TS	POPTR_0008s16420	POPTR_0008s16420 (11)	scaffold_8:11002524-11002929(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11729.1.S1_at	A	A1TS	POPTR_0010s07780	POPTR_0010s07780 (11)	scaffold_10:8730521-8730938(-) (11)	NA	NA	NA	AT2G33400.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04030.1); Has 3875 Blast hits to 2949 proteins in 323 species: Archae - 6; Bacteria - 281; Metazoa - 960; Fungi - 593; Plants - 281; Viruses - 98; Other Eukaryotes - 1656 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11729.2.A1_at	A	A1TS	POPTR_0008s17050	POPTR_0008s17050 (11)	scaffold_8:11467697-11468180(+) (11)	NA	NA	NA	AT5G44040.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117302.1.A1_at	A	A1TS	POPTR_0001s44960	POPTR_0001s44960 (11)	scaffold_1:45288796-45289268(+) (11)	NA	Q9FFU1	"CRS2-associated factor 2, mitochondrial"	AT5G54890.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os08g08860.1	"CRS2-associated factor 2, mitochondrial precursor, putative, expressed"	Medtr7g083490.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.117353.1.A1_s_at	A	A1TS	POPTR_0018s09980	POPTR_0018s09980 (11)	scaffold_18:11036440-11036876(+) (11)	NA	Q05001	NADPH--cytochrome P450 reductase	AT4G30210.1	P450 reductase 2 	LOC_Os09g38620.1	"NADPH reductase, putative, expressed"	Medtr8g129070.1	"Flavodoxin/nitric oxide synthase; Sulphite reductase [NADPH] flavoprotein, alpha chain "	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.11736.1.A1_at	A	A1TS	POPTR_0019s15390	POPTR_0019s15390 (11)	scaffold_19:15902882-15903108(-) (11)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT1G09575.1	Protein of unknown function (DUF607) 	LOC_Os12g02880.1	"E2F-related protein, putative, expressed"	Medtr5g083910.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117367.1.A1_s_at	A	A1TS	POPTR_0010s18910	POPTR_0010s18910 (11)	scaffold_10:17003564-17004179(-) (11)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT3G56200.1	Transmembrane amino acid transporter family protein 	LOC_Os01g61044.2	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g091190.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11739.1.A1_at	A	A1TS	POPTR_0004s11110	POPTR_0004s11110 (11)	scaffold_4:9706095-9706336(+) (11)	NA	P48724	Eukaryotic translation initiation factor 5	AT1G77840.1	Translation initiation factor IF2/IF5 	LOC_Os06g48355.1	expressed protein	Medtr7g094130.1	Translation initiation factor IF5; eIF4-gamma/eIF5/eIF2-epsilon 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.1174.1.S1_s_at	A	A1TS	POPTR_0003s19140	POPTR_0003s19140 (11)	scaffold_3:17934082-17934460(-) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.117404.1.S1_s_at	A	A1TS	POPTR_0010s04820	POPTR_0010s04820 (11)	scaffold_10:5983937-5985101(-) (11)	NA	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.11742.1.A1_at	A	A1TS	POPTR_0001s14780	POPTR_0001s14780 (11)	scaffold_1:11632926-11633350(-) (11)	NA	Q39262	Zinc finger protein 3	AT5G10970.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr3g138050.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11742.2.A1_at	A	A1TS	POPTR_0003s17900	POPTR_0003s17900 (10)	scaffold_3:17140327-17140796(-) (10)	NA	Q42485	Zinc finger protein 1	AT5G10970.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr3g138050.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11743.1.A1_at	A	A1TS	POPTR_0005s18880	POPTR_0005s18880 (11)	scaffold_5:17286774-17287070(-) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr8g099260.1	"Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.117432.1.S1_at	A	A1TS	POPTR_0002s17620	POPTR_0002s17620 (11)	scaffold_2:13453083-13454035(-) (11)	NA	Q40522	Ras-related protein Rab11D	AT1G01200.1	RAB GTPase homolog A3 	LOC_Os09g35860.1	"ras-related protein, putative, expressed"	Medtr8g029570.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.117433.1.S1_at	A	A1TS	POPTR_0010s21200	POPTR_0010s21200 (11)	scaffold_10:18572933-18573357(-) (11)	NA	Q8K339	DNA/RNA-binding protein KIN17	AT1G55460.1	"DNA/RNA-binding protein Kin17, conserved region "	LOC_Os03g37330.1	"KIN, antigenic determinant of recA protein, putative, expressed"	Medtr5g099450.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11745.1.A1_at	A	A1TS	POPTR_0006s00850	POPTR_0006s00850 (11)	scaffold_6:475767-476006(+) (11)	NA	Q9Y5K3	Choline-phosphate cytidylyltransferase B	AT2G32260.1	phosphorylcholine cytidylyltransferase 	LOC_Os02g07720.2	"cytidylyltransferase domain containing protein, expressed"	Medtr4g089770.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.117462.1.S1_at	A	A1TS	POPTR_0014s03350	POPTR_0014s03350 (9)	scaffold_14:2690540-2691375(+) (9)	NA	NA	NA	AT2G26550.2	heme oxygenase 2 	LOC_Os03g27770.1	"heme oxygenase 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11747.1.S1_at	A	A1TS	POPTR_0011s00480	POPTR_0011s00480 (11)	scaffold_11:198042-198513(+) (11)	NA	Q1JPL7	Pectinesterase/pectinesterase inhibitor 18	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g046920.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.11747.2.A1_a_at	A	A1TS	POPTR_0011s00480	POPTR_0011s00480 (10)	scaffold_11:197952-197985(+) (10)//scaffold_4:1276520-1276553(-) (10)	NA	Q1JPL7	Pectinesterase/pectinesterase inhibitor 18	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g046920.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.117473.1.S1_at	A	A1TS	POPTR_0006s09460	POPTR_0006s09460 (11)	scaffold_6:6950451-6950993(+) (11)	NA	P27880	18.2 kDa class I heat shock protein	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067230.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117511.1.S1_s_at	A	A1TS	POPTR_0015s07040	POPTR_0015s07040 (11)	scaffold_15:8121420-8124668(-) (11)	NA	P87061	Tip elongation aberrant protein 1	AT1G18610.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117542.1.S1_at	A	A1TS	POPTR_0013s09090	POPTR_0013s09090 (10)	scaffold_13:8646633-8647128(+) (10)	NA	Q84WF5	Probable VAMP-like protein At1g33475	AT4G10170.2	SNARE-like superfamily protein 	LOC_Os08g01880.1	"synaptobrevin-related family protein, putative, expressed"	Medtr3g016650.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117543.1.S1_at	A	A1TS	POPTR_0018s05060	POPTR_0018s05060 (11)	scaffold_18:4494473-4495107(+) (11)	NA	O23969	Pollen-specific protein SF21	AT5G11790.1	N-MYC downregulated-like 2 	LOC_Os02g13150.1	"pollen-specific protein SF21, putative, expressed"	Medtr1g020750.1	"Legume lectin, beta domain; Ndr "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117551.1.S1_s_at	A	A1TS	POPTR_0012s08040	POPTR_0012s08040 (11)	scaffold_12:9050110-9052252(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G50000.1	Protein kinase superfamily protein 	LOC_Os05g50190.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.117628.1.S1_at	A	A1TS	POPTR_0016s02510	POPTR_0016s02510 (11)	scaffold_16:1240221-1240876(+) (11)	NA	Q9FYE1	Metacaspase-9	AT5G04200.1	metacaspase 9 	LOC_Os11g04010.1	"ICE-like protease p20 domain containing protein, putative, expressed"	Medtr7g104790.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.11764.1.S1_at	A	A1TS	POPTR_0019s11810	POPTR_0019s11810 (9)	scaffold_19:13046095-13046303(+) (11)//scaffold_19:13087411-13087621(+) (9)	POPTR_0019s11820 (6)//POPTR_0019s11830 (6)	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.117662.1.S1_at	A	A1TS	POPTR_0001s10270	POPTR_0001s10270 (10)	scaffold_1:7956600-7957458(+) (10)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT3G61610.1	Galactose mutarotase-like superfamily protein 	LOC_Os05g49430.1	"aldose 1-epimerase, putative, expressed"	Medtr5g009770.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.117669.1.S1_at	A	A1TS	POPTR_0011s14770	POPTR_0011s14770 (11)	scaffold_11:17043107-17044006(-) (11)	NA	Q14149	MORC family CW-type zinc finger protein 3	AT1G19100.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os06g41710.1	"CW-type Zinc Finger, putative, expressed"	Medtr5g024760.1	"ATP-binding region, ATPase-like; Zinc finger, CW-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.11769.1.S1_s_at	A	A1TS	POPTR_0015s14150	POPTR_0015s14150 (11)	scaffold_15:13872486-13872965(+) (11)	NA	Q41382	DEAD-box ATP-dependent RNA helicase 7	AT5G62190.1	DEAD box RNA helicase (PRH75) 	LOC_Os09g34910.1	"DEAD-box ATP-dependent RNA helicase 7, putative, expressed"	Medtr1g130350.1	"Helicase, C-terminal; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.117698.1.S1_s_at	A	A1TS	POPTR_0002s21660	POPTR_0002s21660 (11)	scaffold_2:18209673-18213409(+) (11)	NA	NA	NA	AT2G32980.1	unknown protein; Has 158 Blast hits to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os08g10410.1	expressed protein	Medtr2g005540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1177.1.A1_at	A	A1TS	POPTR_0016s06410	POPTR_0016s06410 (11)	scaffold_16:4313185-4313554(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.2	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.2	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.1177.2.S1_s_at	A	A1TS	POPTR_0014s09000	POPTR_0014s09000 (11)	scaffold_14:6651817-6652040(-) (11)	NA	Q921I9	Exosome complex exonuclease RRP41	AT3G61620.2	3'-5'-exoribonuclease family protein 	LOC_Os09g07820.2	"exosome complex exonuclease, putative, expressed"	Medtr7g143590.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.117716.1.S1_at	A	A1TS	POPTR_0013s11910	POPTR_0013s11910 (11)	scaffold_13:12532881-12533009(-) (11)	NA	NA	NA	AT1G34355.1	forkhead-associated (FHA) domain-containing protein  	LOC_Os11g07050.1	"FHA domain containing protein, putative, expressed"	Medtr1g122320.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117717.1.S1_s_at	A	A1TS	POPTR_0001s44290	POPTR_0001s44290 (11)	scaffold_1:44753850-44754749(-) (11)	NA	Q9LT47	Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM	AT3G20740.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g04270.3	"WD domain, G-beta repeat domain containing protein, expressed"	AC234703_19.1	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117730.1.S1_s_at	A	A2TS	POPTR_0018s14350	POPTR_0018s14350 (11)//POPTR_0269s00220 (9)	scaffold_18:14583922-14584456(-) (11)//scaffold_269:14676-15148(-) (10)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.117744.1.S1_at	A	A1TS	POPTR_0005s03790	POPTR_0005s03790 (11)	scaffold_5:2529073-2529827(-) (11)	NA	Q8L4B2	Nuclear transcription factor Y subunit C-9	AT1G08970.2	"nuclear factor Y, subunit C9 "	LOC_Os02g07450.2	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr7g139450.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.11777.1.A1_s_at	A	A1TS	POPTR_0017s11490	POPTR_0017s11490 (11)	scaffold_17:11230987-11231520(-) (11)	NA	Q42510	Pattern formation protein EMB30	AT1G13980.2	sec7 domain-containing protein 	LOC_Os02g22090.1	"pattern formation protein EMB30, putative, expressed"	Medtr5g087940.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.117770.1.S1_at	A	A1TS	POPTR_0015s13700	POPTR_0015s13700 (9)	scaffold_15:13535388-13536536(+) (9)	NA	NA	NA	AT5G05800.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g10550.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g093090.1	"PIF-like orf1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117771.1.S1_s_at	A	A1TS	POPTR_0011s08700	POPTR_0011s08700 (11)	scaffold_11:10703044-10703598(-) (11)	NA	Q6ATG6	Ribonuclease 3-like protein 2	AT3G20420.1	RNAse THREE-like protein 2 	LOC_Os05g18850.1	"endoribonuclease Dicer, putative, expressed"	Medtr3g142860.1	"Ribonuclease III, bacterial "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.117774.3.S1_at	A	A1MS	POPTR_0018s01700	POPTR_0018s01700 (9)	scaffold_18:1556923-1557173(+) (9)	NA	NA	NA	AT5G25360.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). 	LOC_Os02g10720.1	expressed protein	Medtr4g005450.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117776.1.S1_s_at	A	A1TS	POPTR_0003s16000	POPTR_0003s16000 (11)	scaffold_3:15636336-15636702(+) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G38895.2	RING/U-box superfamily protein 	LOC_Os01g70160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117819.1.S1_at	A	A1TS	POPTR_0019s12340	POPTR_0019s12340 (9)	scaffold_19:13385745-13386516(-) (9)	NA	Q6T486	Probable E3 ubiquitin-protein ligase rbrA	AT3G53690.1	RING/U-box superfamily protein 	LOC_Os08g35060.1	"protein binding protein, putative, expressed"	Medtr8g026380.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.11783.1.A1_s_at	A	A1TS	POPTR_0013s03190	POPTR_0013s03190 (11)	scaffold_13:1950848-1952648(+) (11)	NA	Q8VZ95	Vesicle-associated protein 1-1	AT3G60600.1	vesicle associated protein 	LOC_Os04g45190.1	"MSP domain containing protein, expressed"	Medtr8g139690.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.11788.1.A1_at	A	A1TS	POPTR_0004s13530	POPTR_0004s13530 (9)	scaffold_4:13818874-13819021(+) (9)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.117893.1.S1_at	A	A1TS	POPTR_0004s20030	POPTR_0004s20030 (10)	scaffold_4:19675642-19676389(-) (10)	NA	Q9ZQW8	Splicing factor U2af small subunit A	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.117895.1.S1_at	A	A1TS	POPTR_0004s04140	POPTR_0004s04140 (11)	scaffold_4:2974805-2976891(+) (11)	NA	NA	NA	AT3G47160.1	RING/U-box superfamily protein 	LOC_Os07g46700.3	"zinc finger, RING-type, putative, expressed"	AC233659_30.2	"Zinc finger, RING-type AC233659.1 131567-127095 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1179.1.A1_at	A	A1MS	POPTR_0011s15900	POPTR_0011s15900 (11)	scaffold_11:17919497-17919914(+) (11)	NA	Q9ZU38	Probable ribose-5-phosphate isomerase	AT5G44520.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g56869.1	"ribose-5-phosphate isomerase A, putative, expressed"	Medtr2g036830.1	Ribose 5-phosphate isomerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117937.1.S1_at	A	A1TS	POPTR_0014s06260	POPTR_0014s06260 (11)	scaffold_14:4770144-4770564(-) (11)	NA	O04887	Pectinesterase 2	AT2G45220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr3g040380.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.117957.1.S1_at	A	A1TS	POPTR_0006s11000	POPTR_0006s11000 (11)	scaffold_6:8348778-8350351(-) (11)	NA	NA	NA	AT2G38570.1	CONTAINS InterPro DOMAIN/s: PRC-barrel-like (InterPro:IPR011033); Has 300 Blast hits to 300 proteins in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). 	LOC_Os03g21630.2	"PRC-barrel domain protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117958.1.S1_at	A	A1TS	POPTR_0018s11310	POPTR_0018s11310 (11)	scaffold_18:12111132-12113521(+) (11)	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.1180.1.S1_at	A	A1TS	POPTR_0005s02040	POPTR_0005s02040 (11)	scaffold_5:1331521-1332032(+) (11)	NA	Q9FJ10	GATA transcription factor 16	AT5G49300.1	GATA transcription factor 16 	LOC_Os03g61570.2	expressed protein	Medtr7g138200.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.11802.1.S1_at	A	A1TS	POPTR_0006s23060	POPTR_0006s23060 (11)	scaffold_6:21891754-21893307(+) (11)	NA	O80626	60S ribosomal protein L35-2	AT2G39390.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.118020.1.S1_at	A	A1TS	POPTR_0018s08930	POPTR_0018s08930 (11)	scaffold_18:9842307-9844413(-) (11)	NA	NA	NA	AT1G55205.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118024.1.S1_at	A	A1TS	POPTR_0013s04300	POPTR_0013s04300 (11)	scaffold_13:2898613-2899071(-) (11)	NA	Q9QXN3	Activating signal cointegrator 1	AT2G20410.1	RNA-binding ASCH domain protein 	LOC_Os03g64250.4	expressed protein	Medtr1g093490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118041.1.S1_at	A	A1TS	POPTR_0006s16270	POPTR_0006s16270 (10)	scaffold_6:14199791-14201167(-) (11)	NA	Q941B6	Probable ubiquitin-conjugating enzyme E2 37	AT3G24515.1	ubiquitin-conjugating enzyme 37 	LOC_Os01g42040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr3g083600.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.118042.1.S1_at	A	A1TS	POPTR_0016s03760	POPTR_0016s03760 (10)	scaffold_16:2106213-2106721(-) (10)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.3	"plant-specific domain TIGR01589 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118042.2.S1_at	A	A1MS	POPTR_0016s03760	POPTR_0016s03760 (9)	scaffold_16:2105700-2105815(-) (9)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.3	"plant-specific domain TIGR01589 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118042.3.S1_a_at	A	A2TS	POPTR_0006s03960	POPTR_0016s03760 (11)//POPTR_0006s03960 (11)	scaffold_16:2108101-2109030(-) (11)//scaffold_6:2686577-2687448(-) (11)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118042.3.S1_at	A	A1MS	POPTR_0006s03960	POPTR_0006s03960 (10)	scaffold_6:2686461-2686570(-) (10)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118046.1.S1_at	A	A1TS	POPTR_0009s11110	POPTR_0009s11110 (11)	scaffold_9:9336328-9338884(-) (11)	NA	NA	NA	AT2G15860.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g52780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118060.1.S1_s_at	A	A1TS	POPTR_0006s17970	POPTR_0006s17970 (11)	scaffold_6:16284115-16285118(-) (11)	POPTR_0018s09760 (6)	Q9ZPI1	Lysyl-tRNA synthetase	AT3G11710.1	lysyl-tRNA synthetase 1 	LOC_Os03g38980.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr2g041510.2	"Aspartyl-tRNA synthetase, class IIb; nucleic acid binding, OB-fold, tRNA/helicase-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.11808.1.S1_at	A	A1MS	POPTR_0010s04630	POPTR_0010s04630 (10)	scaffold_10:5761613-5762147(-) (11)	NA	NA	NA	AT1G70160.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). 	LOC_Os09g22440.1	expressed protein	Medtr5g037490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118080.1.S1_s_at	A	A1TS	POPTR_0004s17840	POPTR_0004s17840 (11)	scaffold_4:17887016-17887386(+) (11)	NA	Q38896	Glycine-rich protein 2b	AT4G36020.1	cold shock domain protein 1 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.118083.1.S1_s_at	A	A1TS	POPTR_0014s12660	POPTR_0014s12660 (11)	scaffold_14:9312971-9313212(+) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g55960.1	"pentatricopeptide, putative"	Medtr7g130260.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11810.1.A1_s_at	A	A1TS	POPTR_0010s00700	POPTR_0010s00700 (10)	scaffold_10:397603-399098(-) (11)	NA	Q8R116	Protein notum homolog	AT5G26670.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g133600.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118106.1.S1_s_at	A	A1TS	POPTR_0014s07350	POPTR_0014s07350 (11)	scaffold_14:5541374-5542612(+) (11)	NA	Q5R831	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT1G12600.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os03g02670.2	"transporter family protein, putative, expressed"	Medtr7g083930.2	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118111.1.S1_at	A	A1TA	POPTR_0001s32390	POPTR_0001s32390 (10)	scaffold_1:30748278-30748808(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118124.1.S1_at	A	A1TS	POPTR_0008s07820	POPTR_0008s07820 (11)	scaffold_8:4813555-4815103(+) (11)	NA	Q55141	Acetolactate synthase small subunit	AT5G16290.2	VALINE-TOLERANT 1 	LOC_Os02g39570.1	"ACT domain containing protein, expressed"	Medtr4g137170.1	"Acetolactate synthase, small subunit "	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.118140.1.S1_at	A	A1TS	POPTR_0001s00780	POPTR_0001s00780 (9)	scaffold_1:638033-638811(-) (9)	NA	Q8U4K7	2-phosphoglycerate kinase	AT5G61450.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g28260.6	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118148.1.S1_at	A	A1TS	POPTR_0006s18020	POPTR_0006s18020 (9)	scaffold_6:16373722-16374132(+) (9)	NA	Q6DFC6	WD repeat-containing protein 75	AT2G18900.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g41620.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g129270.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118167.1.S1_s_at	A	A1TS	POPTR_0004s00280	POPTR_0004s00280 (11)	scaffold_4:65573-66977(+) (11)	NA	O04928	Phosphatidate cytidylyltransferase	AT4G22340.3	cytidinediphosphate diacylglycerol synthase 2 	LOC_Os01g55360.3	"phosphatidate cytidylyltransferase, putative, expressed"	Medtr2g029610.1	Phosphatidate cytidylyltransferase 	NA	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	GO:0016020|membrane
PtpAffx.11818.1.A1_s_at	A	A2TS	POPTR_0004s09810	POPTR_0235s00210 (11)//POPTR_0004s09810 (11)	scaffold_235:28723-29488(-) (11)//scaffold_4:8333722-8334487(-) (11)	NA	NA	NA	AT2G18410.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g10460.1	expressed protein	Medtr5g079110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118185.1.S1_s_at	A	A1TS	POPTR_0002s15550	POPTR_0002s15550 (11)	scaffold_2:11611557-11611889(+) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT1G33060.1	NAC 014 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.118187.1.A1_s_at	A	A1TS	POPTR_0006s11680	POPTR_0006s11680 (11)	scaffold_6:8897059-8897254(-) (11)	NA	Q8GYY1	Heat stress transcription factor A-3	AT5G03720.1	heat shock transcription factor A3 	LOC_Os02g32590.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.118191.1.S1_at	A	A1TS	POPTR_0014s18850	POPTR_0014s18850 (11)	scaffold_14:16355549-16356036(-) (11)	NA	Q56W64	Probable isoaspartyl peptidase/L-asparaginase 3	AT5G61540.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os04g46370.1	"L-asparaginase precursor protein, putative, expressed"	Medtr3g009540.1	"Peptidase T2, asparaginase 2 "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.118197.1.S1_at	A	A1TS	POPTR_0017s03390	POPTR_0017s03390 (10)	scaffold_17:2487966-2489110(+) (10)	NA	Q9FMW5	GEM-like protein 7	AT5G23360.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os04g44510.1	"GEM, putative, expressed"	Medtr1g143990.1	Isopenicillin N synthetase; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11820.1.A1_a_at	A	A2TS	POPTR_0001s45640	POPTR_0011s15280 (9)//POPTR_0001s45640 (9)	scaffold_1:46207879-46207971(-) (9)//scaffold_11:15846859-15846951(+) (9)//scaffold_11:17399361-17399453(+) (9)	NA	Q9XGY5	Mitochondrial import inner membrane translocase subunit Tim13	AT1G61570.1	translocase of the inner mitochondrial membrane 13 	LOC_Os02g45820.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr3g109570.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
PtpAffx.11820.1.A1_at	A	A1TS	POPTR_0001s45640	POPTR_0001s45640 (11)	scaffold_1:46206100-46208032(-) (11)	NA	Q9XGY5	Mitochondrial import inner membrane translocase subunit Tim13	AT1G61570.1	translocase of the inner mitochondrial membrane 13 	LOC_Os02g45820.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr3g109570.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
PtpAffx.11820.2.A1_at	A	A1TS	POPTR_0011s15280	POPTR_0011s15280 (11)	scaffold_11:17399390-17401221(+) (11)	NA	Q9XGY5	Mitochondrial import inner membrane translocase subunit Tim13	AT1G61570.1	translocase of the inner mitochondrial membrane 13 	LOC_Os02g45820.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr3g109570.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
PtpAffx.118206.1.S1_s_at	A	A2TS	POPTR_0008s07250	POPTR_0008s07250 (11)//POPTR_0010s19230 (11)	scaffold_10:17207584-17207621(+) (11)//scaffold_8:4418873-4418910(-) (11)	NA	P56286	Eukaryotic translation initiation factor 2 subunit alpha	AT2G40290.1	Eukaryotic translation initiation factor 2 subunit 1 	LOC_Os03g18510.1	expressed protein	Medtr3g094730.1	"RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005850|eukaryotic translation initiation factor 2 complex
PtpAffx.118220.1.S1_at	A	A1TS	POPTR_0012s09350	POPTR_0012s09350 (10)	scaffold_12:10399665-10399928(+) (10)	NA	Q98TX3	Programmed cell death protein 4	AT5G63190.2	MA3 domain-containing protein 	LOC_Os08g02690.1	"MA3 domain containing protein, expressed"	Medtr8g110080.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118220.1.S1_s_at	A	A1TS	POPTR_0012s09350	POPTR_0012s09350 (11)	scaffold_12:10399547-10399910(+) (11)	NA	Q98TX3	Programmed cell death protein 4	AT5G63190.2	MA3 domain-containing protein 	LOC_Os08g02690.1	"MA3 domain containing protein, expressed"	Medtr8g110080.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118220.3.S1_a_at	A	A1TS	POPTR_0015s09970	POPTR_0015s09970 (11)	scaffold_15:11039384-11039756(+) (11)	NA	Q98TX3	Programmed cell death protein 4	AT5G63190.2	MA3 domain-containing protein 	LOC_Os08g02690.1	"MA3 domain containing protein, expressed"	Medtr8g110080.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11823.1.S1_at	A	A1TS	POPTR_0003s19740	POPTR_0003s19740 (11)	scaffold_3:18398821-18400407(+) (11)	NA	NA	NA	AT3G07910.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 192 Blast hits to 192 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	NA	NA	Medtr3g020070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118289.1.S1_at	A	A1TS	POPTR_0008s19310	POPTR_0008s19310 (10)	scaffold_8:13258212-13258315(-) (10)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.11830.1.A1_at	A	A1TS	POPTR_0006s21990	POPTR_0006s21990 (11)	scaffold_6:21000828-21001470(-) (11)	NA	Q54GN8	Ribosome biogenesis protein NSA2 homolog	AT5G06360.1	Ribosomal protein S8e family protein 	LOC_Os07g47580.1	"ribosomal protein, putative, expressed"	NA	NA	NA	NA	GO:0005622|intracellular
PtpAffx.11830.2.A1_at	A	A1TS	POPTR_0016s07110	POPTR_0016s07110 (11)	scaffold_16:4950808-4951517(-) (11)	NA	Q54GN8	Ribosome biogenesis protein NSA2 homolog	AT5G06360.1	Ribosomal protein S8e family protein 	LOC_Os07g47580.1	"ribosomal protein, putative, expressed"	NA	NA	NA	NA	GO:0005622|intracellular
PtpAffx.118333.1.S1_s_at	A	A1TS	POPTR_0001s09670	POPTR_0001s09670 (11)	scaffold_1:7376196-7376656(+) (11)//scaffold_673:10898-11358(+) (10)	NA	Q38861	DNA repair helicase XPB1	AT5G41370.1	homolog of xeroderma pigmentosum complementation group B 1 	LOC_Os01g49680.1	"DNA repair helicase XPB2, putative, expressed"	NA	NA	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.118343.1.S1_at	A	A1TS	POPTR_0002s08830	POPTR_0002s08830 (11)	scaffold_2:6206116-6206508(+) (11)	NA	P50747	Biotin--protein ligase	AT2G25710.2	holocarboxylase synthase 1 	LOC_Os02g07040.2	"biotin--protein ligase, putative, expressed"	Medtr3g098110.2	Biotin--acetyl-CoA-carboxylase ligase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0003824|catalytic activity	NA
PtpAffx.118347.1.S1_at	A	A1TS	POPTR_0010s15930	POPTR_0010s15930 (11)	scaffold_10:14991906-14993437(-) (11)	NA	Q8L6H7	"Beta-glucosidase-like SFR2, chloroplastic"	AT3G06510.1	Glycosyl hydrolase superfamily protein 	LOC_Os11g45710.7	"Os11bglu36  SFR2 homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118354.1.S1_at	A	A1TS	POPTR_0004s04210	POPTR_0004s04210 (9)	scaffold_4:3026457-3027347(+) (9)	NA	NA	NA	AT3G15390.1	silencing defective 5 	LOC_Os02g42670.1	"DUF1771 domain containing protein, putative, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11837.1.S1_s_at	A	A1TS	POPTR_0012s09860	POPTR_0012s09860 (11)	scaffold_12:10762011-10762636(-) (11)	NA	Q93VI3	60S ribosomal protein L17-1	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.118389.1.S1_at	A	A1TS	POPTR_0009s14880	POPTR_0009s14880 (11)	scaffold_9:11572620-11575930(-) (11)	POPTR_0004s19720 (6)	A2YBX5	Protein kinase G11A	AT3G44610.1	Protein kinase superfamily protein 	LOC_Os11g05320.1	"AGC_PVPK_like_kin82y.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11839.1.A1_s_at	A	A1TS	POPTR_0014s13480	POPTR_0014s13480 (11)	scaffold_14:9927096-9927264(+) (11)	NA	NA	NA	AT2G48160.1	Tudor/PWWP/MBT domain-containing protein 	LOC_Os03g24339.1	"PWWP domain containing protein, expressed"	Medtr1g086720.1	PWWP; Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1184.1.A1_at	A	A1MA	POPTR_0005s08940	POPTR_0005s08940 (9)	scaffold_5:6265011-6265403(+) (9)	NA	Q9FGF8	Ethylene-responsive transcription factor ABR1	AT5G64750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.118422.2.S1_a_at	A	A1TS	POPTR_0009s05000	POPTR_0009s05000 (11)	scaffold_9:5204701-5205404(-) (11)	NA	NA	NA	AT3G47160.1	RING/U-box superfamily protein 	LOC_Os07g46700.4	"zinc finger, RING-type, putative, expressed"	Medtr4g013020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11843.1.S1_a_at	A	A1TS	POPTR_0007s02580	POPTR_0007s02580 (11)	scaffold_7:1519099-1519378(+) (11)	NA	O23044	Peroxidase 3	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os06g46799.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.11843.2.A1_s_at	A	A2TS	POPTR_0007s02580	POPTR_0007s02580 (11)//POPTR_0017s06550 (11)	scaffold_17:4986484-4986579(+) (11)//scaffold_7:1518992-1519087(+) (11)	NA	O23044	Peroxidase 3	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os06g46799.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.118433.2.A1_a_at	A	A1TS	POPTR_0004s16470	POPTR_0004s16470 (11)	scaffold_4:16925095-16925482(-) (11)	NA	P51820	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006545|glycine biosynthetic process||GO:0006231|dTMP biosynthetic process	GO:0004799|thymidylate synthase activity||GO:0004146|dihydrofolate reductase activity	NA
PtpAffx.118459.1.S1_at	A	A1TS	POPTR_0017s08630	POPTR_0017s08630 (11)	scaffold_17:7248578-7250048(-) (11)	NA	Q94BZ5	Heat stress transcription factor A-5	AT4G13980.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os02g29340.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g132650.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.118484.1.S1_s_at	A	A2TS	POPTR_0006s26940	POPTR_0006s26940 (11)//POPTR_0018s01620 (11)	scaffold_18:1513586-1513620(-) (11)//scaffold_6:24984797-24984831(-) (11)	NA	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.118491.1.S1_at	A	A1TS	POPTR_0002s17930	POPTR_0002s17930 (9)	scaffold_2:13771920-13772528(-) (9)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G00820.1	IQ-domain 17 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g067020.2	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118500.1.S1_at	A	A1TS	POPTR_0019s13490	POPTR_0019s13490 (11)	scaffold_19:14410983-14412151(+) (11)	NA	Q6R2K3	Protein STRUBBELIG-RECEPTOR FAMILY 3	AT4G03390.1	STRUBBELIG-receptor family 3 	LOC_Os02g07960.4	"STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed"	Medtr2g014380.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.118505.1.S1_at	A	A1TS	POPTR_0015s15330	POPTR_0015s15330 (9)	scaffold_15:14648050-14648440(-) (9)	NA	NA	NA	AT2G35150.1	EXORDIUM like 1 	LOC_Os07g31430.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118520.1.S1_s_at	A	A1TS	POPTR_0001s02420	POPTR_0001s02420 (11)	scaffold_1:1869482-1869774(-) (11)	NA	Q9FIQ1	Ubiquitin carboxyl-terminal hydrolase 21	AT5G46740.1	ubiquitin-specific protease 21 	LOC_Os06g08530.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr5g030130.2	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.118525.2.S1_a_at	A	A1TS	POPTR_0010s23920	POPTR_0010s23920 (11)	scaffold_10:20367435-20368369(-) (11)	NA	P43935	Uncharacterized protein HI_0077	AT5G04520.1	Protein of unknown function DUF455 	LOC_Os03g24830.1	"uncharacterized protein HI0077, putative, expressed"	Medtr3g124330.1	Protein of unknown function DUF455 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118533.1.S1_s_at	A	A1TS	POPTR_0001s25500	POPTR_0001s25500 (11)	scaffold_1:24596771-24597244(+) (11)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT5G58970.1	uncoupling protein 2 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11857.1.S1_at	A	A1TS	POPTR_0006s06500	POPTR_0006s06500 (11)	scaffold_6:4678848-4679198(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os06g07230.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr8g121240.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.118574.1.S1_at	A	A1TS	POPTR_0006s08750	POPTR_0006s08750 (11)	scaffold_6:6446284-6446756(+) (11)	NA	P51106	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g53810.1	"leucoanthocyanidin reductase, putative, expressed"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.118574.2.S1_s_at	A	A1TS	POPTR_0002s14890	POPTR_0002s14890 (11)	scaffold_2:11016287-11023577(+) (11)	POPTR_0192s00200 (7)	P51102	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.11858.1.A1_at	A	A1TS	POPTR_0006s07110	POPTR_0006s07110 (11)	scaffold_6:5111409-5112267(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118580.1.S1_a_at	A	A1TS	POPTR_0001s38250	POPTR_0001s38250 (11)	scaffold_1:37341622-37341722(-) (11)	NA	Q9GZR2	RNA exonuclease 4	AT3G15080.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g28980.2	"exonuclease, putative, expressed"	Medtr2g121500.1	"Zinc finger, C2H2-type; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118580.1.S1_at	A	A1TS	POPTR_0001s38250	POPTR_0001s38250 (11)	scaffold_1:37341372-37342373(-) (11)	NA	Q9GZR2	RNA exonuclease 4	AT3G15080.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g28980.2	"exonuclease, putative, expressed"	Medtr2g121500.1	"Zinc finger, C2H2-type; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11859.1.A1_x_at	A	A1TS	POPTR_0006s24790	POPTR_0006s24790 (11)	scaffold_6:23339858-23341976(+) (11)	NA	NA	NA	AT4G29480.1	Mitochondrial ATP synthase subunit G protein 	LOC_Os01g41610.2	"mitochondrial ATP synthase g subunit family protein, putative, expressed"	Medtr4g160610.1	Mitochondrial ATP synthase g subunit 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0000276|""mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.11859.3.A1_a_at	A	A1TS	POPTR_0006s24790	POPTR_0006s24790 (11)	scaffold_6:23339696-23341924(+) (11)	NA	NA	NA	AT4G29480.1	Mitochondrial ATP synthase subunit G protein 	LOC_Os01g41610.2	"mitochondrial ATP synthase g subunit family protein, putative, expressed"	Medtr4g160610.1	Mitochondrial ATP synthase g subunit 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0000276|""mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.11859.4.S1_a_at	A	A1TS	POPTR_0006s24810	POPTR_0006s24810 (10)	scaffold_6:23344878-23347223(+) (10)	NA	NA	NA	AT4G29480.1	Mitochondrial ATP synthase subunit G protein 	LOC_Os05g45740.2	"mitochondrial ATP synthase g subunit family protein, putative, expressed"	Medtr4g160610.1	Mitochondrial ATP synthase g subunit 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0000276|""mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.11859.5.A1_a_at	A	A1TS	POPTR_0006s24810	POPTR_0006s24810 (11)	scaffold_6:23347399-23347592(+) (11)	NA	NA	NA	AT4G29480.1	Mitochondrial ATP synthase subunit G protein 	LOC_Os05g45740.2	"mitochondrial ATP synthase g subunit family protein, putative, expressed"	Medtr4g160610.1	Mitochondrial ATP synthase g subunit 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0000276|""mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.118595.1.S1_at	A	A1TS	POPTR_0002s19500	POPTR_0002s19500 (11)	scaffold_2:15481745-15482022(+) (11)	NA	NA	NA	AT3G66654.2	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g29390.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118623.1.S1_at	A	A1TS	POPTR_0008s13060	POPTR_0008s13060 (10)	scaffold_8:8514676-8515731(-) (10)	NA	Q88BD4	Phosphomannomutase/phosphoglucomutase	AT1G70820.1	"phosphoglucomutase, putative / glucose phosphomutase, putative "	LOC_Os06g28194.1	expressed protein	Medtr4g114290.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.118649.1.S1_at	A	A1TS	POPTR_0004s09215	POPTR_0004s09215 (9)	scaffold_4:7736150-7736635(+) (10)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118665.1.S1_at	A	A1TS	POPTR_0015s10800	POPTR_0015s10800 (10)	scaffold_15:11594212-11604234(-) (11)	NA	NA	NA	AT5G50410.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g41900.1	expressed protein	Medtr3g150490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118679.1.S1_s_at	A	A2TS	POPTR_0006s24290	POPTR_0006s24300 (11)//POPTR_0006s24290 (11)	scaffold_6:22929339-22929701(+) (11)//scaffold_6:22941449-22941811(+) (11)	NA	NA	NA	AT4G33050.3	calmodulin-binding family protein 	LOC_Os01g38980.2	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118681.1.S1_at	A	A1TS	POPTR_0005s26840	POPTR_0005s26840 (11)	scaffold_5:24705845-24706624(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT4G38430.1	rho guanyl-nucleotide exchange factor 1 	LOC_Os09g37270.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr3g092590.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.118708.1.S1_at	A	A1TS	POPTR_0019s04640	POPTR_0019s04640 (11)	scaffold_19:4809643-4809732(+) (11)	NA	Q9ATM2	Aquaporin SIP1-2	AT3G04090.1	small and basic intrinsic protein 1A 	LOC_Os01g08660.1	"aquaporin protein, putative, expressed"	Medtr7g099920.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118737.1.S1_s_at	A	A1TS	POPTR_0019s08940	POPTR_0019s08940 (11)	scaffold_19:10504577-10505697(+) (11)	NA	Q3THJ3	Probable RNA-binding protein EIF1AD	AT2G40780.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os03g02310.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.118751.1.S1_at	A	A1TS	POPTR_0010s24370	POPTR_0010s24370 (10)	scaffold_10:20613539-20614707(+) (11)	POPTR_0475s00210 (7)	O75351	Vacuolar protein sorting-associated protein 4B	AT2G27600.1	AAA-type ATPase family protein 	LOC_Os01g04814.1	"vacuolar protein sorting-associating protein 4B, putative, expressed"	Medtr4g069940.1	"AAA ATPase, central region; MIT "	NA	GO:0005524|ATP binding	NA
PtpAffx.11878.1.S1_a_at	A	A2TS	POPTR_0005s18430	POPTR_0005s18430 (11)//POPTR_0007s10750 (11)	scaffold_5:16641810-16642046(-) (11)//scaffold_7:10811020-10811268(+) (11)	NA	Q9FH94	Ethylene-responsive transcription factor ERF010	AT5G67190.1	DREB and EAR motif protein 2 	LOC_Os04g55520.1	"AP2 domain containing protein, expressed"	Medtr5g016640.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.11878.2.S1_at	A	A1TS	POPTR_0005s18430	POPTR_0005s18430 (11)	scaffold_5:16641698-16642113(-) (11)	NA	Q9FH94	Ethylene-responsive transcription factor ERF010	AT5G67190.1	DREB and EAR motif protein 2 	LOC_Os04g55520.1	"AP2 domain containing protein, expressed"	Medtr5g016640.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.118792.1.S1_at	A	A1TS	POPTR_0004s01660	POPTR_0004s01660 (10)	scaffold_4:1005586-1005928(-) (10)	NA	Q9ZS97	"UPF0051 protein ABCI8, chloroplastic"	AT4G04770.1	ATP binding cassette protein 1 	LOC_Os01g61400.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr7g029700.1	FeS assembly protein SufB 	GO:0016226|iron-sulfur cluster assembly	GO:0005515|protein binding	NA
PtpAffx.118798.1.S1_at	A	A1TS	POPTR_0015s12100	POPTR_0015s12100 (11)	scaffold_15:12514134-12514594(+) (11)	NA	Q9FLT2	Inositol polyphosphate multikinase beta	AT5G61760.1	inositol polyphosphate kinase 2 beta 	LOC_Os02g32370.1	"inositol hexaphosphate kinase, putative, expressed"	Medtr8g043170.1	Inositol polyphosphate kinase 	NA	GO:0008440|inositol trisphosphate 3-kinase activity	NA
PtpAffx.118799.1.S1_s_at	A	A1TS	POPTR_0016s03170	POPTR_0016s03170 (11)	scaffold_16:1609927-1610482(-) (11)	NA	O22207	Ubiquitin carboxyl-terminal hydrolase 5	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.118825.1.S1_at	A	A1TS	POPTR_0005s08750	POPTR_0005s08750 (10)	scaffold_5:6098802-6099547(+) (10)	NA	Q9SJ12	"Probable ATP synthase 24 kDa subunit, mitochondrial"	AT2G21870.1	copper ion binding;cobalt ion binding;zinc ion binding 	LOC_Os02g03860.1	"mitochondrial ATP synthase precursor, putative, expressed"	Medtr4g141050.1	"Probable ATP synthase 24 kDa subunit, mitochondrial precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118826.1.S1_at	A	A2TS	POPTR_0021s00270	POPTR_0021s00270 (11)//POPTR_0011s00260 (9)	scaffold_11:45426-45859(-) (11)//scaffold_21:61252-61685(-) (11)	NA	NA	NA	AT1G11915.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g25950.1	expressed protein	Medtr8g147140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118841.1.S1_at	A	A1TS	POPTR_0015s13370	POPTR_0015s13370 (11)	scaffold_15:13358189-13358933(-) (11)	NA	Q9XH44	CEN-like protein 1	AT5G62040.1	PEBP (phosphatidylethanolamine-binding protein) family protein 	LOC_Os12g05590.1	"RCN3  Centroradialis-like1 homogous to TFL1  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	AC146807_6.1	Phosphatidylethanolamine-binding protein AC146807.56 102779-100897 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118843.1.S1_at	A	A1TS	POPTR_0007s09720	POPTR_0007s09720 (9)	scaffold_7:9199428-9199908(-) (11)	NA	Q9SXL4	Histidine kinase 1	AT2G17820.1	histidine kinase 1 	LOC_Os06g08450.1	"histidine kinase, putative"	Medtr5g022390.1	Response regulator receiver; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.118864.2.A1_at	A	A1TS	POPTR_0001s13180	POPTR_0001s13180 (10)	scaffold_1:10251859-10252681(-) (10)	NA	Q8LL04	RNA polymerase II C-terminal domain phosphatase-like 3	AT2G33540.1	C-terminal domain phosphatase-like 3 	LOC_Os11g31890.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr7g020970.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.118885.1.S1_s_at	A	A1TS	POPTR_0005s17460	POPTR_0005s17460 (11)	scaffold_5:14898598-14899037(+) (11)	NA	Q84W40	RING-H2 finger protein ATL11	AT1G72200.1	RING/U-box superfamily protein 	LOC_Os09g29310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g150140.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118896.1.S1_s_at	A	A1TS	POPTR_1651s00200	POPTR_1651s00200 (11)	scaffold_1651:1517-1678(-) (11)//scaffold_7:2283228-2283380(-) (9)	NA	NA	NA	NA	NA	LOC_Os12g08850.1	expressed protein	Medtr4g142640.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118899.1.S1_at	A	A1TS	POPTR_0003s15490	POPTR_0003s15490 (11)	scaffold_3:15245740-15246344(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT4G20140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os07g31500.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.1189.1.S1_at	A	A1TS	POPTR_0015s13630	POPTR_0015s13630 (11)	scaffold_15:13496752-13497236(-) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT5G62090.2	SEUSS-like 2 	LOC_Os06g03600.3	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1189.2.A1_s_at	A	A1TS	POPTR_0012s13680	POPTR_0012s13680 (11)	scaffold_12:13723773-13724068(-) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT5G62090.2	SEUSS-like 2 	LOC_Os06g03600.3	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118900.1.S1_at	A	A1TS	POPTR_0002s05310	POPTR_0002s05310 (11)	scaffold_2:3455562-3456100(+) (11)	NA	NA	NA	AT3G63170.1	Chalcone-flavanone isomerase family protein 	LOC_Os07g38390.1	"chalcone isomerase, putative, expressed"	Medtr1g019800.1	hypothetical protein 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
PtpAffx.118902.1.S1_at	A	A1TS	POPTR_0001s32900	POPTR_0001s32900 (11)	scaffold_1:31183417-31185567(-) (11)	NA	P44446	Putative long-chain-fatty-acid--CoA ligase	AT3G23790.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g62850.1	"AMP-binding enzyme, putative, expressed"	Medtr3g104670.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.118907.1.S1_at	A	A1TS	POPTR_0010s10850	POPTR_0010s10850 (11)	scaffold_10:11252331-11253789(+) (11)	POPTR_0008s14320 (6)	Q9ZUM0	Zinc finger CCCH domain-containing protein 17	AT2G02160.1	CCCH-type zinc finger family protein 	LOC_Os04g57600.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119790.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.118908.1.S1_at	A	A1TS	POPTR_0019s11940	POPTR_0019s11940 (11)	scaffold_19:13140875-13142265(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g10180.1	"methyltransferase domain containing protein, putative, expressed"	Medtr4g109580.1	"CMV 1a interacting protein 1, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.118918.1.S1_s_at	A	A1TS	POPTR_0002s02290	POPTR_0002s02290 (11)	scaffold_2:1287229-1287708(-) (11)	NA	Q9LNU6	Pentatricopeptide repeat-containing protein At1g20230	AT1G20230.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g30710.1	"pentatricopeptide, putative, expressed"	Medtr5g008630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118921.1.S1_at	A	A1TS	POPTR_0015s08450	POPTR_0015s08450 (11)	scaffold_15:9720537-9721210(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os02g02310.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr8g125320.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.118925.1.S1_at	A	A1MS	POPTR_0003s14230	POPTR_0003s14230 (11)	scaffold_3:14355216-14355390(+) (11)	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.1	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr3g079520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.118928.1.S1_at	A	A1TS	POPTR_0012s12960	POPTR_0012s12960 (11)	scaffold_12:13304239-13305623(-) (11)	NA	Q5F389	WW domain-containing oxidoreductase	AT4G23420.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.118931.1.S1_at	A	A1TS	POPTR_0014s07090	POPTR_0014s07090 (11)	scaffold_14:5350194-5350664(-) (11)	NA	P28658	Ataxin-10	AT4G00231.1	ARM repeat superfamily protein 	LOC_Os03g02720.1	expressed protein	Medtr7g083540.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118933.1.S1_s_at	A	A1TS	POPTR_0001s42720	POPTR_0001s42720 (11)	scaffold_1:42752133-42754206(-) (11)	NA	Q9SHI1	"Translation initiation factor IF-2, chloroplastic"	AT1G17220.1	"Translation initiation factor 2, small GTP-binding protein "	LOC_Os05g49970.2	"translation initiation factor IF-2, chloroplast precursor, putative, expressed"	Medtr2g077230.1	"Elongation factor Tu, domain 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0003743|translation initiation factor activity	GO:0005622|intracellular
PtpAffx.118950.1.S1_s_at	A	A1TS	POPTR_0005s12480	POPTR_0005s12480 (10)	scaffold_5:9249612-9249688(+) (10)	NA	Q9C9G6	UPF0195 protein At1g68310	AT3G50845.1	Protein of unknown function (DUF59) 	LOC_Os03g56410.2	expressed protein	Medtr5g020030.1	"UPF0195 protein At3g09380, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118952.1.S1_s_at	A	A1TS	POPTR_0013s10210	POPTR_0013s10210 (11)	scaffold_13:10225512-10226851(+) (11)	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT1G71691.2	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os08g02094.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g013140.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.118954.1.S1_at	A	A1MS	POPTR_0003s15230	POPTR_0003s15230 (11)	scaffold_3:15084134-15084518(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118955.1.S1_s_at	A	A1TS	POPTR_0014s11920	POPTR_0014s11920 (11)	scaffold_14:8826714-8827278(+) (11)	NA	Q71VM4	Importin subunit alpha-1a	AT3G06720.2	importin alpha isoform 1 	LOC_Os01g14950.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.118968.1.S1_at	A	A1MS	POPTR_0015s00860	POPTR_0015s00860 (9)	scaffold_15:501150-501799(-) (10)	NA	NA	NA	AT5G53660.1	growth-regulating factor 7 	LOC_Os04g51190.3	"growth-regulating factor, putative, expressed"	Medtr3g123080.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.11898.1.A1_at	A	A1TS	POPTR_0004s16280	POPTR_0004s16280 (11)	scaffold_4:16724798-16726178(-) (11)	NA	NA	NA	AT4G39235.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g51459.1	conserved hypothetical protein	Medtr3g005030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118991.2.S1_at	A	A1TS	POPTR_0017s08530	POPTR_0017s08530 (10)	scaffold_17:7112001-7113171(-) (10)	NA	NA	NA	AT5G43490.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g63040.1	expressed protein	Medtr3g105200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118996.1.S1_s_at	A	A1TS	POPTR_0019s05650	POPTR_0019s05650 (11)	scaffold_19:6012236-6013142(-) (11)	NA	Q6MDI2	Polyribonucleotide nucleotidyltransferase	AT3G03710.1	"polyribonucleotide nucleotidyltransferase, putative "	LOC_Os07g07310.1	"polynucleotide phosphorylase, putative, expressed"	Medtr7g103420.1	Polyribonucleotide nucleotidyltransferase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.11902.1.A1_at	A	A1TS	POPTR_0008s03860	POPTR_0008s03860 (9)	scaffold_8:2098323-2098421(+) (9)	NA	Q9GMB0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	AT2G01720.1	Ribophorin I 	LOC_Os05g23600.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed"	Medtr1g120720.1	Ribophorin I 	GO:0006486|protein amino acid glycosylation	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.119025.1.S1_at	A	A1MS	POPTR_0017s04620	POPTR_0017s04620 (9)	scaffold_17:3538690-3539226(+) (9)	NA	O49453	Uncharacterized protein At4g28440	AT4G28440.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119032.1.S1_s_at	A	A1TS	POPTR_0016s08290	POPTR_0016s08290 (11)	scaffold_16:6099721-6101362(-) (11)	NA	Q9ZUT3	Protein ALUMINUM SENSITIVE 3	AT2G37330.1	aluminum sensitive 3 	LOC_Os05g02750.1	"ABC transporter, membrane-spanning/permease subunit, putative, expressed"	AC235022_6.1	Conserved hypothetical protein 245 AC235022.1 27547-25968 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119058.1.S1_s_at	A	A1TS	POPTR_0006s26440	POPTR_0006s26440 (11)	scaffold_6:24677055-24677472(-) (11)	NA	NA	NA	AT2G25625.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr3g136300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119065.1.S1_at	A	A2TS	POPTR_0002s14860	POPTR_0002s14860 (11)//POPTR_0192s00220 (11)	scaffold_192:7110-15183(-) (11)//scaffold_2:11007453-11008321(+) (11)	NA	P51106	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081180.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.119068.1.S1_s_at	A	A1TS	POPTR_0006s24840	POPTR_0006s24840 (11)	scaffold_6:23362580-23363551(-) (11)	NA	Q9SZJ5	"Serine hydroxymethyltransferase, mitochondrial"	AT4G32520.2	serine hydroxymethyltransferase 3 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr2g021910.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.119069.1.S1_at	A	A1TS	POPTR_0001s00300	POPTR_0001s00300 (11)	scaffold_1:168134-168628(+) (11)	NA	Q8H038	Xyloglucan galactosyltransferase KATAMARI1 homolog	AT4G22580.1	Exostosin family protein 	LOC_Os10g40559.1	"exostosin family domain containing protein, expressed"	Medtr8g138830.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.11907.1.A1_a_at	A	A1TS	POPTR_0014s10800	POPTR_0014s10800 (11)	scaffold_14:8078038-8078113(-) (11)	NA	O60155	Putative prolyl-tRNA synthetase C19C7.06	AT3G62120.2	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os12g25710.3	"bifunctional aminoacyl-tRNA synthetase, putative, expressed"	Medtr7g134100.1	"Prolyl-tRNA synthetase, bacterial "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.11907.1.A1_s_at	A	A2TS	POPTR_0002s18810	POPTR_0002s18810 (11)//POPTR_0014s10800 (11)	scaffold_14:8078708-8079346(-) (11)//scaffold_2:14703602-14704247(-) (11)	NA	O60155	Putative prolyl-tRNA synthetase C19C7.06	AT3G62120.2	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os12g25710.3	"bifunctional aminoacyl-tRNA synthetase, putative, expressed"	Medtr7g134100.1	"Prolyl-tRNA synthetase, bacterial "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.119074.1.S1_at	A	A2TS	POPTR_0001s22090	POPTR_0135s00200 (11)//POPTR_0001s22090 (11)	scaffold_1:20708404-20708721(+) (11)//scaffold_135:522-839(+) (11)	POPTR_0135s00220 (7)	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os11g05760.1	"OsProCP5 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.119076.1.S1_at	A	A1TS	POPTR_0014s08110	POPTR_0014s08110 (9)	scaffold_14:6020883-6021801(+) (9)	NA	Q8TCT7	Signal peptide peptidase-like 2B	AT1G01650.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 4 	LOC_Os06g51430.1	"signal peptide peptidase-like 2B, putative, expressed"	Medtr8g031970.1	"Protease-associated PA; Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.11908.1.S1_at	A	A1TS	POPTR_0010s00440	POPTR_0010s00440 (9)	scaffold_10:225538-226342(+) (9)	NA	P91622	"[Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial"	AT3G06483.1	pyruvate dehydrogenase kinase 	LOC_Os07g44330.2	"kinase, putative, expressed"	Medtr2g052960.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.11908.2.S1_a_at	A	A1TS	POPTR_0010s00440	POPTR_0010s00440 (11)	scaffold_10:224404-224808(+) (11)	NA	P91622	"[Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial"	AT3G06483.1	pyruvate dehydrogenase kinase 	LOC_Os07g44330.2	"kinase, putative, expressed"	Medtr2g052960.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.1191.1.A1_at	A	A1MS	POPTR_0018s11430	POPTR_0018s11430 (11)	scaffold_18:12167361-12167882(-) (11)	NA	NA	NA	AT5G57910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16930.1	expressed protein	Medtr8g145180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119100.1.A1_at	A	A1TA	POPTR_0003s04300	POPTR_0003s04300 (10)	scaffold_3:5009788-5010004(-) (11)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11912.1.S1_at	A	A1TS	POPTR_0001s37760	POPTR_0001s37760 (11)	scaffold_1:36841430-36842329(-) (11)	NA	A7SXK3	Transmembrane emp24 domain-containing protein	AT3G07680.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os09g32968.2	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr5g105940.3	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.119122.1.A1_at	A	A1TS	POPTR_0009s13860	POPTR_0009s13860 (11)	scaffold_9:10955998-10956672(-) (11)	NA	Q9ZVX2	Transcription factor ABORTED MICROSPORES	AT2G16910.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02820.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g096910.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.119147.1.A1_at	A	A1TS	POPTR_0002s17390	POPTR_0002s17390 (11)	scaffold_2:13148253-13148802(-) (11)	NA	NA	NA	AT2G46550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g30930.1	expressed protein	Medtr3g123640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11916.1.S1_a_at	A	A2TS	POPTR_0017s07160	POPTR_0017s07160 (11)//POPTR_0017s07200 (10)	scaffold_17:5548176-5548620(-) (11)//scaffold_17:5584675-5585119(-) (10)	NA	O82794	MADS-box protein AGL24	AT4G24540.1	AGAMOUS-like 24 	LOC_Os03g08754.2	"OsMADS47 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11916.2.S1_a_at	A	A1TS	POPTR_0007s03260	POPTR_0007s03260 (11)	scaffold_7:1869213-1869261(-) (11)	NA	Q9FUY6	MADS-box protein JOINTLESS	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os02g52340.1	"OsMADS22 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11916.3.S1_at	A	A1MS	POPTR_0017s07160	POPTR_0017s07160 (11)	scaffold_17:5548246-5549037(-) (11)	POPTR_0017s07200 (8)	O82794	MADS-box protein AGL24	AT4G24540.1	AGAMOUS-like 24 	LOC_Os03g08754.2	"OsMADS47 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.119186.1.A1_at	A	A1MS	POPTR_0002s20170	POPTR_0002s20170 (11)	scaffold_2:16114330-16114801(-) (11)	NA	NA	NA	AT4G02210.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). 	LOC_Os08g25050.1	"PIF-like orf1, putative, expressed"	Medtr5g022470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119193.1.A1_at	A	A1TS	POPTR_0015s01450	POPTR_0015s01450 (11)	scaffold_15:890693-891039(+) (11)	NA	Q8LDQ4	PP2A regulatory subunit TAP46	AT5G53000.1	2A phosphatase associated protein of 46 kD 	LOC_Os12g04290.1	"PP2A regulatory subunit TAP46, putative, expressed"	Medtr3g123750.1	TAP42-like protein 	GO:0009607|response to biotic stimulus||GO:0009966|regulation of signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling||GO:0023051|regulation of signaling process	NA	NA
PtpAffx.1192.1.A1_at	A	A1TS	POPTR_0009s05800	POPTR_0009s05800 (11)	scaffold_9:5796397-5797347(-) (11)	NA	Q05AL1	Armadillo repeat-containing protein 8	AT1G51350.1	ARM repeat superfamily protein 	LOC_Os11g41990.1	"armadillo/beta-catenin-like repeat family protein, expressed"	Medtr5g104530.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11920.1.A1_at	A	A1TS	POPTR_0003s17220	POPTR_0003s17220 (11)	scaffold_3:16656573-16657651(+) (11)	NA	Q54GB2	CTD small phosphatase-like protein 2	AT5G11860.4	SCP1-like small phosphatase 5 	LOC_Os07g10690.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr3g103740.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119259.1.A1_at	A	A1TS	POPTR_0018s12250	POPTR_0018s12250 (11)	scaffold_18:12789028-12789601(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g38450.1	expressed protein	Medtr8g122590.1	hypothetical protein 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.119285.1.S1_s_at	A	A1TS	POPTR_0002s07890	POPTR_0002s07890 (11)	scaffold_2:5423411-5423590(-) (11)	NA	Q9C5W3	"NAD kinase 2, chloroplastic"	AT1G21640.1	NAD kinase 2 	LOC_Os11g08670.1	"NAD kinase, putative, expressed"	Medtr4g104490.1	ATP-NAD/AcoX kinase 	GO:0008152|metabolic process	GO:0003951|NAD+ kinase activity	NA
PtpAffx.1193.1.S1_at	A	A1TS	POPTR_0007s13720	POPTR_0007s13720 (10)	scaffold_7:13784369-13784669(+) (10)	NA	Q42600	Cytochrome P450 84A1	AT4G36220.1	ferulic acid 5-hydroxylase 1 	LOC_Os10g36848.1	"cytochrome P450, putative, expressed"	Medtr5g021320.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.119307.1.S1_at	A	A1TS	POPTR_0015s03540	POPTR_0015s03540 (9)	scaffold_15:3191165-3191517(+) (9)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119343.1.A1_a_at	A	A1TS	POPTR_0005s26390	POPTR_0005s26390 (11)	scaffold_5:24433941-24434159(-) (11)	NA	Q96MB7	Putative nuclease HARBI1	AT4G29780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os01g40070.1	expressed protein	Medtr1g019300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119343.2.A1_a_at	A	A1TS	POPTR_0018s07790	POPTR_0018s07790 (11)	scaffold_18:8591154-8591618(-) (11)	NA	Q96MB7	Putative nuclease HARBI1	AT4G29780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os01g40070.1	expressed protein	Medtr1g019300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119347.1.S1_at	A	A1TS	POPTR_0008s06790	POPTR_0008s06790 (11)	scaffold_8:4076772-4077262(+) (11)	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g093610.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.119354.1.A1_at	A	A1TS	POPTR_0012s12850	POPTR_0012s12850 (11)	scaffold_12:13240093-13240168(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT4G25640.1	detoxifying efflux carrier 35 	LOC_Os08g44870.1	"MATE efflux family protein, putative, expressed"	Medtr1g126620.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.119354.2.A1_s_at	A	A1TS	POPTR_0015s12780	POPTR_0015s12780 (11)	scaffold_15:13006064-13008235(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT4G25640.1	detoxifying efflux carrier 35 	LOC_Os08g44870.1	"MATE efflux family protein, putative, expressed"	Medtr1g126620.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.11937.1.A1_s_at	A	A1TS	POPTR_0002s09200	POPTR_0002s09200 (10)	scaffold_2:6517545-6517704(+) (10)	NA	NA	NA	AT5G02130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g38330.1	"NDP1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1194.1.S1_a_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20856702-20856784(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.1194.1.S1_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20855788-20856685(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.1194.2.S1_s_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20856775-20857175(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.11940.1.A1_a_at	A	A1TS	POPTR_0002s14920	POPTR_0002s14920 (11)	scaffold_2:11043984-11044503(+) (11)	NA	NA	NA	AT3G60810.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1499 (InterPro:IPR010865); Has 444 Blast hits to 444 proteins in 143 species: Archae - 0; Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). 	LOC_Os03g64140.1	expressed protein	Medtr4g024760.1	Protein of unknown function DUF1499 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119400.1.A1_at	A	A1TS	POPTR_0018s07590	POPTR_0018s07590 (9)	scaffold_18:8030798-8031213(-) (9)	NA	Q5R7W3	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	AT4G33060.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g40050.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.11941.1.A1_at	A	A1MA	POPTR_0019s14530	POPTR_0019s14530 (10)	scaffold_19:15300585-15301062(-) (10)	NA	Q56YT0	Laccase-3	AT2G30210.1	laccase 3 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr5g081380.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.119412.1.A1_at	A	A1TS	POPTR_0016s03500	POPTR_0016s03500 (9)	scaffold_16:1869116-1869908(-) (9)	NA	Q5ZJQ8	Ubiquitin-associated domain-containing protein 2	AT2G41160.1	Ubiquitin-associated (UBA) protein 	LOC_Os01g16330.1	"OsRhmbd2 - Putative Rhomboid homologue, expressed"	Medtr7g106540.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119413.1.A1_at	A	A1TS	POPTR_0001s16780	POPTR_0001s16780 (11)	scaffold_1:13581675-13582077(+) (11)	NA	Q9LNR3	"Lipoxygenase 3, chloroplastic"	AT1G17420.1	lipoxygenase 3 	LOC_Os03g08220.1	"lipoxygenase protein, putative, expressed"	Medtr8g025120.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.119425.1.A1_s_at	A	A1TS	POPTR_0012s00200	POPTR_0012s00200 (10)	scaffold_12:3059-3286(+) (11)	NA	Q9URX1	UNC93-like protein C922.05c	AT1G18010.1	Major facilitator superfamily protein 	LOC_Os04g01520.1	expressed protein	Medtr3g122110.1	"Protein of unknown function DUF895, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11944.1.A1_at	A	A1MS	POPTR_0016s06240	POPTR_0016s06240 (10)	scaffold_16:4182178-4182818(-) (10)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT1G55310.2	SC35-like splicing factor 33 	LOC_Os03g25770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.119469.1.S1_at	A	A1TS	POPTR_0015s00580	POPTR_0015s00580 (11)	scaffold_15:352566-352805(-) (11)	NA	A7QEU4	Peroxidase 5	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os03g02920.1	"peroxidase precursor, putative, expressed"	Medtr3g122440.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.11947.1.S1_at	A	A1TS	POPTR_0019s04040	POPTR_0019s04040 (11)	scaffold_19:4134138-4134398(-) (11)	NA	NA	NA	AT5G37360.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g57030.1	expressed protein	Medtr1g093310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119471.1.A1_s_at	A	A1TS	POPTR_0013s13910	POPTR_0013s13910 (10)	scaffold_13:14230695-14231257(-) (10)	NA	Q9SDT1	"Protochlorophyllide reductase, chloroplastic"	AT1G03630.1	protochlorophyllide oxidoreductase C 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119473.1.A1_at	A	A2TS	POPTR_0014s05990	POPTR_0176s00200 (11)//POPTR_0014s05990 (11)	scaffold_14:4486183-4486619(-) (11)//scaffold_176:1912-2348(-) (11)	NA	NA	NA	AT3G60590.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g45200.2	"DNA binding protein, putative, expressed"	Medtr4g028670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119474.1.A1_at	A	A1TS	POPTR_0011s02450	POPTR_0011s02450 (11)	scaffold_11:2340248-2340726(+) (11)	NA	Q9FIX3	Pentatricopeptide repeat-containing protein At5g39710	AT1G30290.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g42120.1	PPR repeat containing protein	Medtr2g022110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119477.1.A1_at	A	A1TS	POPTR_0008s03980	POPTR_0008s03980 (10)	scaffold_8:2195701-2196158(+) (10)	NA	Q99685	Monoglyceride lipase	AT5G19290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g21560.1	"esterase/lipase/thioesterase family protein, putative, expressed"	Medtr1g120940.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119499.2.A1_s_at	A	A1TS	POPTR_0003s01100	POPTR_0003s01100 (11)	scaffold_3:958261-958442(-) (11)	NA	Q9ET30	Transmembrane 9 superfamily member 3	AT1G10950.1	transmembrane nine 1 	LOC_Os11g07910.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr4g137290.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.1195.1.S1_at	A	A1TS	POPTR_0003s19420	POPTR_0003s19420 (10)	scaffold_3:18153135-18153652(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g043570.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119501.1.A1_s_at	A	A1MS	POPTR_0009s16170	POPTR_0009s16170 (11)	scaffold_9:12357599-12357649(+) (11)	NA	Q08BW0	OTU domain-containing protein 5-A	AT2G27350.2	OTU-like cysteine protease family protein 	LOC_Os04g33780.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr2g107500.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119508.1.A1_at	A	A1TS	POPTR_0003s07030	POPTR_0003s07030 (9)	scaffold_3:8635903-8636441(-) (9)	NA	Q43111	Pectinesterase 3	AT1G53840.1	pectin methylesterase 1 	LOC_Os09g26360.1	"pectinesterase, putative, expressed"	Medtr8g026630.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.119533.1.S1_s_at	A	A2TS	POPTR_0008s19790	POPTR_0010s04560 (11)//POPTR_0008s19790 (11)	scaffold_10:5661817-5662952(-) (11)//scaffold_8:13649388-13650551(+) (11)	NA	Q8VXV4	Chaperone protein dnaJ 16	AT1G24120.1	ARG1-like 1 	LOC_Os02g50760.2	"heat shock protein DnaJ, putative, expressed"	Medtr5g036860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.119534.1.S1_at	A	A1TS	POPTR_0001s35190	POPTR_0001s35190 (11)	scaffold_1:33485965-33486517(-) (11)	NA	Q9FUZ2	"Peptide deformylase 1B, chloroplastic"	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
PtpAffx.119536.1.S1_at	A	A1TS	POPTR_0014s08940	POPTR_0014s08940 (9)	scaffold_14:6611782-6613330(+) (9)	NA	Q6TDP4	Kelch-like protein 17	AT3G61600.2	POZ/BTB containin G-protein 1 	LOC_Os06g31100.1	"E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.119547.1.S1_s_at	A	A2TS	POPTR_0006s21080	POPTR_0006s21080 (11)//POPTR_0016s06190 (11)	scaffold_16:4141609-4142230(+) (11)//scaffold_6:20179195-20179849(+) (11)	NA	P48578	Serine/threonine-protein phosphatase PP2A-3 catalytic subunit	AT3G58500.1	protein phosphatase 2A-4 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	AC235488_34.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase AC235488.1 160871-167050 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.119564.1.S1_at	A	A1TS	POPTR_0004s14200	POPTR_0004s14200 (11)	scaffold_4:14684919-14685441(+) (11)	NA	Q6IDS6	E3 ubiquitin-protein ligase makorin	AT3G08505.1	zinc finger (CCCH-type/C3HC4-type RING finger) family protein 	LOC_Os06g21390.2	"Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed"	Medtr3g030250.1	"Zinc finger, CCCH-type; Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.11958.1.A1_at	A	A1TS	POPTR_0005s15580	POPTR_0005s15580 (11)	scaffold_5:12210941-12211111(-) (11)	NA	Q9ZNS1	40S ribosomal protein S7	AT3G02560.2	Ribosomal protein S7e family protein 	LOC_Os03g18580.1	"40S ribosomal protein S7, putative"	Medtr6g022820.1	Ribosomal protein S7E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.11958.2.A1_s_at	A	A1TS	POPTR_0006s08820	POPTR_0006s08820 (11)	scaffold_6:6495812-6496285(+) (11)	NA	Q9ZNS1	40S ribosomal protein S7	AT3G02560.2	Ribosomal protein S7e family protein 	LOC_Os05g27940.1	"40S ribosomal protein S7, putative, expressed"	Medtr6g022820.1	Ribosomal protein S7E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.119583.1.S1_s_at	A	A1TS	POPTR_0009s10000	POPTR_0009s10000 (11)	scaffold_9:8712443-8712733(-) (11)	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT2G15320.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g43250.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g021240.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.11959.1.A1_at	A	A1TS	POPTR_0015s07820	POPTR_0015s07820 (11)	scaffold_15:9113395-9114036(+) (11)	NA	NA	NA	AT1G74780.1	Nodulin-like / Major Facilitator Superfamily protein 	LOC_Os12g44180.1	"nodulin, putative, expressed"	Medtr2g121680.1	Nodulin-like; Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1196.1.S1_at	A	A1TS	POPTR_0002s04010	POPTR_0002s04010 (11)	scaffold_2:2515903-2516249(-) (11)	NA	Q8LDC8	Ethylene-responsive transcription factor 1B	AT3G23240.1	ethylene response factor 1 	LOC_Os03g64260.1	"AP2 domain containing protein, expressed"	Medtr4g072870.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.119610.1.S1_at	A	A1TS	POPTR_0002s25880	POPTR_0002s25880 (11)	scaffold_2:22896686-22897616(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.11962.1.A1_at	A	A1TS	POPTR_0006s12030	POPTR_0006s12030 (10)	scaffold_6:9197138-9197556(-) (10)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT2G36670.2	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11962.2.A1_at	A	A1MS	POPTR_0006s12030	POPTR_0006s12030 (10)	scaffold_6:9200082-9201040(-) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT2G36670.2	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119636.1.S1_at	A	A1TS	POPTR_0019s08410	POPTR_0019s08410 (11)	scaffold_19:9939001-9939703(-) (11)	NA	O36015	Putative ribosomal RNA methyltransferase C4F10.03c	AT5G01230.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g49140.1	"ribosomal RNA large subunit methyltransferase J, putative, expressed"	Medtr2g015180.1	Ribosomal RNA methyltransferase RrmJ/FtsJ 	GO:0032259|methylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0008168|methyltransferase activity	NA
PtpAffx.119641.1.S1_at	A	A1TS	POPTR_0003s12720	POPTR_0003s12720 (11)	scaffold_3:13221798-13222243(-) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT4G11570.2	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os09g39560.1	"genetic modifier, putative, expressed"	Medtr4g149420.1	Histidine acid phosphatase; Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11966.1.A1_at	A	A1TS	POPTR_0018s13100	POPTR_0018s13100 (11)	scaffold_18:13548437-13548993(-) (11)	NA	NA	NA	AT3G15760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52565.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g120460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119663.1.S1_at	A	A1TS	POPTR_0016s12850	POPTR_0016s12850 (11)	scaffold_16:12209542-12210171(+) (11)	NA	Q9LFG2	"Diaminopimelate epimerase, chloroplastic"	AT3G53580.1	diaminopimelate epimerase family protein 	LOC_Os12g37960.2	"diaminopimelate epimerase, chloroplast precursor, putative, expressed"	Medtr7g077770.1	Diaminopimelate epimerase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009089|lysine biosynthetic process via diaminopimelate	GO:0008837|diaminopimelate epimerase activity	GO:0005737|cytoplasm
PtpAffx.11967.1.S1_s_at	A	A1TS	POPTR_0006s14220	POPTR_0006s14220 (11)	scaffold_6:11539169-11539258(+) (11)	NA	NA	NA	AT1G19130.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). "	LOC_Os08g35480.1	"cupin superfamily protein, putative, expressed"	Medtr8g132610.2	"Chain G, X-Ray Crystal Structure Of Protein Q8u9w0 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11967.2.S1_at	A	A1MS	POPTR_0006s14220	POPTR_0006s14220 (11)	scaffold_6:11538220-11539329(+) (11)	NA	NA	NA	AT1G19130.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). "	LOC_Os08g35480.1	"cupin superfamily protein, putative, expressed"	Medtr8g132610.2	"Chain G, X-Ray Crystal Structure Of Protein Q8u9w0 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119684.1.S1_at	A	A1TS	POPTR_0002s20660	POPTR_0002s20660 (11)	scaffold_2:16737257-16737476(+) (11)	NA	Q8LEA8	Phytochrome A-associated F-box protein	AT4G02440.1	F-box family protein 	LOC_Os05g30190.1	"phytochrome A-associated F-box protein, putative, expressed"	Medtr8g068260.1	"Phytochrome A-associated F-box protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1197.1.S1_a_at	A	A2TS	POPTR_0008s02700	POPTR_0010s23990 (11)//POPTR_0008s02700 (11)	scaffold_10:20403682-20403721(-) (11)//scaffold_8:1367935-1367974(+) (11)	NA	NA	NA	AT5G04550.1	Protein of unknown function (DUF668) 	LOC_Os12g05180.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr3g124300.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1197.1.S1_at	A	A1TS	POPTR_0010s23990	POPTR_0010s23990 (11)	scaffold_10:20403280-20403675(-) (11)	NA	NA	NA	AT5G04550.1	Protein of unknown function (DUF668) 	LOC_Os12g05180.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr3g124300.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1197.2.S1_at	A	A1TS	POPTR_0008s02700	POPTR_0008s02700 (11)	scaffold_8:1367868-1368415(+) (11)	NA	NA	NA	AT5G04550.1	Protein of unknown function (DUF668) 	LOC_Os12g05180.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr3g124300.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1197.3.S1_at	A	A1TS	POPTR_0010s23990	POPTR_0010s23990 (11)	scaffold_10:20404641-20404820(-) (11)	NA	NA	NA	AT5G04550.1	Protein of unknown function (DUF668) 	LOC_Os12g05180.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr3g124300.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11971.1.S1_at	A	A1TS	POPTR_0003s11820	POPTR_0003s11820 (11)	scaffold_3:12579117-12580691(+) (11)	NA	Q9SZ63	"Nudix hydrolase 14, chloroplastic"	AT4G11980.1	nudix hydrolase homolog 14 	LOC_Os06g03910.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g106420.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.119715.1.S1_at	A	A1TS	POPTR_0009s02220	POPTR_0009s02220 (9)	scaffold_9:2948796-2950139(+) (9)	NA	Q9C5J8	"Outer envelope protein of 80 kDa, chloroplastic"	AT3G44160.1	Outer membrane OMP85 family protein 	LOC_Os05g43470.1	"outer membrane protein, OMP85 family, putative, expressed"	Medtr2g104800.1	Bacterial surface antigen (D15) 	NA	NA	GO:0019867|outer membrane
PtpAffx.119736.1.S1_s_at	A	A1TS	POPTR_0010s16420	POPTR_0010s16420 (11)	scaffold_10:15395094-15396085(-) (11)	NA	Q8RU27	"Alpha-1,4-glucan-protein synthase [UDP-forming] 2"	AT3G08900.1	reversibly glycosylated polypeptide 3 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
PtpAffx.119759.1.S1_s_at	A	A1TS	POPTR_0017s05500	POPTR_0017s05500 (11)	scaffold_17:4356364-4357698(+) (11)	NA	Q8LDW8	"Probable hydroxyacylglutathione hydrolase 2, chloroplast"	AT1G06130.2	glyoxalase 2-4 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119791.1.S1_s_at	A	A1TS	POPTR_0013s15070	POPTR_0013s15070 (11)	scaffold_13:15123867-15125639(+) (11)	NA	P35559	Insulin-degrading enzyme	AT1G06900.1	Insulinase (Peptidase family M16) family protein 	LOC_Os03g21810.1	"insulin-degrading enzyme, putative, expressed"	Medtr5g102730.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1198.1.S1_at	A	A1TS	POPTR_0009s05780	POPTR_0009s05780 (9)	scaffold_9:5790294-5790808(-) (9)	NA	Q60HC3	Heterogeneous nuclear ribonucleoprotein F	AT3G20890.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g03890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g080760.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1198.2.S1_at	A	A1TS	POPTR_0001s26520	POPTR_0001s26520 (11)	scaffold_1:25512783-25513183(-) (11)	NA	Q60HC3	Heterogeneous nuclear ribonucleoprotein F	AT3G20890.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g03890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g080760.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.11980.1.A1_at	A	A1TS	POPTR_0001s33350	POPTR_0001s33350 (11)	scaffold_1:31545190-31546006(+) (11)	NA	Q9LSD8	Membrane-anchored ubiquitin-fold protein 4	AT3G26980.1	membrane-anchored ubiquitin-fold protein 4 precursor 	LOC_Os04g32270.1	"membrane-anchored ubiquitin-fold protein, putative, expressed"	Medtr7g148240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119807.1.S1_a_at	A	A1TS	POPTR_0015s04670	POPTR_0015s04670 (11)	scaffold_15:4888292-4888931(+) (11)	NA	O35075	Down syndrome critical region protein 3 homolog	AT1G48550.1	Vacuolar protein sorting-associated protein 26 	NA	NA	Medtr6g083380.1	Vacuolar protein sorting-associated protein 26 	GO:0007034|vacuolar transport	NA	GO:0030904|retromer complex
PtpAffx.119811.1.S1_at	A	A1MS	POPTR_0002s05820	POPTR_0002s05820 (10)	scaffold_2:3824972-3826457(+) (10)	NA	Q9SK55	NAC domain-containing protein 42	AT2G43000.1	NAC domain containing protein 42 	LOC_Os03g56580.1	"no apical meristem protein, putative, expressed"	Medtr5g098180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.119811.1.S1_s_at	A	A1TS	POPTR_0002s05820	POPTR_0002s05820 (11)	scaffold_2:3824995-3826373(+) (11)	NA	Q9SK55	NAC domain-containing protein 42	AT2G43000.1	NAC domain containing protein 42 	LOC_Os03g56580.1	"no apical meristem protein, putative, expressed"	Medtr5g098180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.119838.1.S1_a_at	A	A1TS	POPTR_0018s09890	POPTR_0018s09890 (9)	scaffold_18:10937664-10937699(-) (9)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os08g12430.1	"VERNALIZATION-INSENSITIVE, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119838.1.S1_at	A	A1TS	POPTR_0018s09890	POPTR_0018s09890 (11)	scaffold_18:10937496-10937762(-) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os08g12430.1	"VERNALIZATION-INSENSITIVE, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11984.1.S1_a_at	A	A1TS	POPTR_0006s22250	POPTR_0006s22250 (11)	scaffold_6:21294414-21298527(-) (11)	NA	NA	NA	AT5G22280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g33290.2	expressed protein	Medtr2g107420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119859.1.S1_at	A	A1MS	POPTR_0003s03040	POPTR_0003s03040 (9)	scaffold_3:3373445-3373688(-) (9)	NA	Q5QMN3	DEAD-box ATP-dependent RNA helicase 20	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os01g10050.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.119859.1.S1_s_at	A	A1TS	POPTR_0003s03040	POPTR_0003s03040 (11)	scaffold_3:3371420-3373648(-) (11)	NA	Q5QMN3	DEAD-box ATP-dependent RNA helicase 20	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os01g10050.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.1199.1.A1_at	A	A1TS	POPTR_0010s13610	POPTR_0010s13610 (11)	scaffold_10:13417059-13417850(-) (11)	NA	Q84L31	Putative DNA repair protein RAD23-3	AT3G02540.1	Rad23 UV excision repair protein family 	LOC_Os09g24200.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.11991.2.S1_a_at	A	A1TS	POPTR_0013s04000	POPTR_0013s04000 (9)	scaffold_13:2626013-2626045(+) (9)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.11991.2.S1_s_at	A	A1TS	POPTR_0013s04000	POPTR_0013s04000 (11)	scaffold_13:2625628-2625810(+) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.119912.1.S1_at	A	A1TS	POPTR_0004s17790	POPTR_0004s17790 (11)	scaffold_4:17836144-17837149(-) (11)	NA	Q86W50	Putative methyltransferase METT10D	AT2G21070.3	methyltransferases 	LOC_Os02g02880.1	expressed protein	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.119923.1.S1_s_at	A	A3TS	POPTR_0001s33820	POPTR_0006s06180 (11)//POPTR_0001s33820 (11)//POPTR_0025s00560 (11)	scaffold_1:31981738-31981772(-) (11)//scaffold_25:252516-252550(-) (11)//scaffold_6:4394689-4394723(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.2	Inorganic H pyrophosphatase family protein 	LOC_Os06g43660.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119936.1.S1_at	A	A1TS	POPTR_0009s07950	POPTR_0009s07950 (11)	scaffold_9:7357864-7359702(-) (11)	NA	P93028	Ubiquitin-activating enzyme E1 1	AT2G30110.1	ubiquitin-activating enzyme 1 	LOC_Os11g01510.3	"ubiquitin-activating enzyme, putative, expressed"	Medtr5g080760.1	"Ubiquitin-activating enzyme, E1; Lipase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.11994.1.A1_at	A	A1TS	POPTR_0008s12880	POPTR_0008s12880 (11)	scaffold_8:8378632-8378912(+) (11)	NA	NA	NA	AT1G14990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g42120.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11994.3.A1_at	A	A1TS	POPTR_0010s12250	POPTR_0010s12250 (11)	scaffold_10:12299794-12301217(-) (11)	NA	NA	NA	AT1G14990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g42120.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119949.1.S1_at	A	A1TS	POPTR_0001s24690	POPTR_0001s24690 (11)	scaffold_1:23942947-23943369(+) (11)	NA	NA	NA	AT3G46580.1	methyl-CPG-binding domain protein 5 	NA	NA	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.119949.2.S1_a_at	A	A1TS	POPTR_0001s24690	POPTR_0001s24690 (11)	scaffold_1:23940476-23943128(+) (11)	NA	NA	NA	AT3G46580.1	methyl-CPG-binding domain protein 5 	NA	NA	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.119955.1.S1_at	A	A1TS	POPTR_0007s06900	POPTR_0007s06900 (11)	scaffold_7:5214270-5214709(+) (11)	POPTR_0005s08840 (7)	B9H5L9	"Lipoyl synthase, mitochondrial"	AT2G20860.1	lipoic acid synthase 1 	LOC_Os04g38330.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.119956.1.S1_at	A	A1TS	POPTR_0009s08410	POPTR_0009s08410 (11)	scaffold_9:7708611-7708932(-) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.119956.1.S1_s_at	A	A1TS	POPTR_0009s08410	POPTR_0009s08410 (11)	scaffold_9:7708471-7708584(-) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.119957.1.S1_at	A	A1TS	POPTR_0005s20560	POPTR_0005s20560 (9)	scaffold_5:19617682-19617919(+) (10)	NA	A9PJQ8	"NAD(P)H-quinone oxidoreductase subunit M, chloroplastic"	AT4G37925.1	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex 	LOC_Os04g45600.1	"NDH-M H PLASTOQUINONE DEHY, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	"GO:0016655|""oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor"""	NA
PtpAffx.119957.1.S1_s_at	A	A1TS	POPTR_0005s20560	POPTR_0005s20560 (11)	scaffold_5:19617946-19618765(+) (11)	NA	A9PJQ8	"NAD(P)H-quinone oxidoreductase subunit M, chloroplastic"	AT4G37925.1	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex 	LOC_Os04g45600.1	"NDH-M H PLASTOQUINONE DEHY, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	"GO:0016655|""oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor"""	NA
PtpAffx.119964.1.S1_s_at	A	A1TS	POPTR_0006s02650	POPTR_0006s02650 (11)	scaffold_6:1691516-1691857(+) (11)	NA	Q14103	Heterogeneous nuclear ribonucleoprotein D0	AT2G41060.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g54440.3	"RNA binding protein, putative, expressed"	Medtr7g104960.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.119965.1.S1_at	A	A1TS	POPTR_0010s06070	POPTR_0010s06070 (11)	scaffold_10:7499571-7500077(-) (11)	NA	Q8YTC2	Uncharacterized WD repeat-containing protein alr2800	AT1G24530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g50740.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g037080.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119968.1.S1_at	A	A1MS	POPTR_0013s15730	POPTR_0013s15730 (11)	scaffold_13:15638090-15638290(-) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT5G10860.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.4	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119968.1.S1_s_at	A	A1TS	POPTR_0013s15730	POPTR_0013s15730 (11)	scaffold_13:15637484-15638141(-) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT5G10860.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.4	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11997.1.A1_at	A	A1TS	POPTR_0002s11960	POPTR_0002s11960 (11)	scaffold_2:8862213-8862415(+) (11)	NA	O22193	U-box domain-containing protein 4	AT3G01400.1	ARM repeat superfamily protein 	LOC_Os03g32100.1	"spotted leaf 11, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119972.1.A1_at	A	A1TS	POPTR_0012s14040	POPTR_0012s14040 (11)	scaffold_12:14035333-14035700(+) (11)	NA	Q39111	Gibberellin 20 oxidase 2	AT5G51810.1	gibberellin 20 oxidase 2 	LOC_Os03g63970.1	"gibberellin 20 oxidase 1, putative, expressed"	Medtr1g129980.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.119978.1.S1_s_at	A	A1TS	POPTR_0003s07950	POPTR_0003s07950 (11)	scaffold_3:9442946-9444370(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11998.1.A1_at	A	A1TS	POPTR_0002s09820	POPTR_0002s09820 (11)	scaffold_2:7030912-7031347(-) (11)	NA	Q9C9Q8	Probable pectin methyltransferase QUA2	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr5g072950.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.119994.1.S1_a_at	A	A2TS	POPTR_0002s15070	POPTR_0014s06730 (11)//POPTR_0002s15070 (11)	scaffold_14:5092921-5093337(-) (11)//scaffold_2:11176210-11176627(-) (11)	NA	Q5KHA8	Peptidyl-prolyl cis-trans isomerase-like 3	AT1G01940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os06g04000.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	AC233070_2.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type AC233070.4 3910-1563 F EGN_Mt090430 200"	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.119994.1.S1_at	A	A1TS	POPTR_0014s06730	POPTR_0014s06730 (9)	scaffold_14:5092681-5093298(-) (9)	NA	Q5KHA8	Peptidyl-prolyl cis-trans isomerase-like 3	AT1G01940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os06g04000.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	AC233070_2.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type AC233070.4 3910-1563 F EGN_Mt090430 200"	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.119994.2.S1_at	A	A1TS	POPTR_0002s15070	POPTR_0002s15070 (11)	scaffold_2:11176543-11177615(-) (11)	NA	Q5KHA8	Peptidyl-prolyl cis-trans isomerase-like 3	AT1G01940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os06g04000.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	AC233070_2.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type AC233070.4 3910-1563 F EGN_Mt090430 200"	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.1200.1.A1_at	A	A1TS	POPTR_0006s23000	POPTR_0006s23000 (11)	scaffold_6:21837884-21838376(+) (11)	NA	NA	NA	AT5G02580.1	Plant protein 1589 of unknown function 	LOC_Os05g38680.1	"plant-specific domain TIGR01589 family protein, expressed"	Medtr7g022750.1	Uncharacterized plant-specific domain 01589 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120002.1.S1_s_at	A	A1TS	POPTR_0015s13060	POPTR_0015s13060 (11)	scaffold_15:13179774-13180261(+) (11)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.120026.1.S1_at	A	A1TS	POPTR_0005s08990	POPTR_0005s08990 (11)	scaffold_5:6322904-6323296(+) (11)	NA	Q869R9	Myb-like protein J	AT5G08520.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr8g073480.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120026.2.S1_a_at	A	A2TS	POPTR_0005s08990	POPTR_0005s08990 (11)//POPTR_0007s07150 (10)	scaffold_5:6319034-6319550(+) (11)//scaffold_7:5497744-5498271(+) (10)	NA	Q869R9	Myb-like protein J	AT5G08520.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr8g073480.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120026.2.S1_at	A	A1TS	POPTR_0007s07150	POPTR_0007s07150 (11)	scaffold_7:5497824-5498197(+) (11)	NA	Q869R9	Myb-like protein J	AT5G08520.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr8g073480.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12006.1.S1_at	A	A1TS	POPTR_0005s10950	POPTR_0005s10950 (11)	scaffold_5:7876584-7876932(+) (11)	NA	NA	NA	AT2G17705.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08330.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 5; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os03g04370.1	"protein-methionine-S-oxide reductase, putative, expressed"	Medtr5g022970.1	"peptide-methionine--S-oxide reductase (exp=, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120060.1.S1_at	A	A1TS	POPTR_0002s02860	POPTR_0002s02860 (11)	scaffold_2:1760913-1761588(+) (11)	NA	Q6Z690	Lysine-specific histone demethylase 1 homolog 1	AT4G16310.1	LSD1-like 3 	LOC_Os10g38850.1	"amine oxidase, putative, expressed"	Medtr1g028330.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.120072.1.S1_at	A	A1TS	POPTR_0001s09350	POPTR_0001s09350 (10)	scaffold_1:7142028-7142254(-) (10)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT4G11570.2	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os09g39560.1	"genetic modifier, putative, expressed"	Medtr4g149420.1	Histidine acid phosphatase; Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.12008.1.A1_at	A	A1TS	POPTR_0002s00750	POPTR_0002s00750 (11)	scaffold_2:341064-341630(+) (11)	NA	NA	NA	AT1G42550.1	plastid movement impaired1 	LOC_Os09g38090.1	expressed protein	Medtr4g155580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120084.1.S1_at	A	A1TS	POPTR_0001s31270	POPTR_0001s31270 (11)	scaffold_1:29595216-29595262(+) (11)	NA	Q31R08	GTP-binding protein lepA	AT5G08650.1	Small GTP-binding protein 	LOC_Os02g06300.1	"GTP-binding protein lepA, putative, expressed"	Medtr7g009110.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.120084.1.S1_s_at	A	A1TS	POPTR_0001s31270	POPTR_0001s31270 (11)	scaffold_1:29595352-29596328(+) (11)	NA	Q31R08	GTP-binding protein lepA	AT5G08650.1	Small GTP-binding protein 	LOC_Os02g06300.1	"GTP-binding protein lepA, putative, expressed"	Medtr7g009110.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.120087.1.S1_at	A	A1TS	POPTR_0008s08230	POPTR_0008s08230 (11)	scaffold_8:5122059-5122541(-) (11)	NA	Q9SA34	Probable inosine-5'-monophosphate dehydrogenase	AT1G16350.1	Aldolase-type TIM barrel family protein 	LOC_Os03g56800.1	"CBS domain containing membrane protein, putative, expressed"	Medtr7g100530.1	IMP dehydrogenase; 	GO:0055114|oxidation reduction	GO:0003824|catalytic activity	NA
PtpAffx.120087.2.S1_s_at	A	A1TS	POPTR_0010s18080	POPTR_0010s18080 (11)	scaffold_10:16449603-16450244(+) (11)	NA	Q9SA34	Probable inosine-5'-monophosphate dehydrogenase	AT1G16350.1	Aldolase-type TIM barrel family protein 	LOC_Os03g56800.1	"CBS domain containing membrane protein, putative, expressed"	Medtr7g100530.1	IMP dehydrogenase; 	GO:0055114|oxidation reduction	GO:0003824|catalytic activity	NA
PtpAffx.120111.1.S1_s_at	A	A1TS	POPTR_0002s01010	POPTR_0002s01010 (11)	scaffold_2:497257-499566(+) (11)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT1G20670.1	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr5g100440.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120127.1.A1_at	A	A1TS	POPTR_0001s34460	POPTR_0001s34460 (10)	scaffold_1:32587140-32587451(+) (10)	NA	NA	NA	AT1G29820.2	Magnesium transporter CorA-like family protein 	LOC_Os01g47460.1	expressed protein	Medtr2g034370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120139.1.S1_at	A	A1TS	POPTR_0003s17700	POPTR_0003s17700 (10)	scaffold_3:17000518-17001717(+) (10)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120141.1.S1_s_at	A	A1TS	POPTR_0017s00520	POPTR_0017s00520 (11)	scaffold_17:197676-198335(+) (11)	POPTR_0007s00200 (7)	O80585	Methylenetetrahydrofolate reductase 2	AT2G44160.1	methylenetetrahydrofolate reductase 2 	LOC_Os03g60090.1	"methylenetetrahydrofolate reductase, putative, expressed"	Medtr1g047280.1	Methylenetetrahydrofolate reductase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0055114|oxidation reduction||GO:0006555|methionine metabolic process||GO:0044281|small molecule metabolic process	GO:0004489|methylenetetrahydrofolate reductase (NADPH) activity	NA
PtpAffx.120153.1.S1_at	A	A1MS	POPTR_0007s14570	POPTR_0007s14570 (10)	scaffold_7:14318814-14318964(+) (10)	NA	Q8LF99	Probable xyloglucan endotransglucosylase/hydrolase protein 6	AT4G37800.1	xyloglucan endotransglucosylase/hydrolase 7 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g102140.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.120153.1.S1_s_at	A	A1TS	POPTR_0007s14570	POPTR_0007s14570 (11)	scaffold_7:14318524-14319183(+) (11)	NA	Q8LF99	Probable xyloglucan endotransglucosylase/hydrolase protein 6	AT4G37800.1	xyloglucan endotransglucosylase/hydrolase 7 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g102140.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.120155.1.S1_s_at	A	A1TS	POPTR_0014s16350	POPTR_0014s16350 (11)	scaffold_14:12463169-12463717(-) (11)	POPTR_0002s22260 (7)	B1HUD0	Chaperone protein dnaJ	AT2G05230.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os02g30620.3	"dnaJ domain containing protein, expressed"	Medtr5g104830.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.12016.2.S1_a_at	A	A2TS	POPTR_0008s17880	POPTR_0010s06620 (11)//POPTR_0008s17880 (11)	scaffold_10:7910053-7910819(-) (10)//scaffold_8:12019392-12020174(+) (11)	NA	P28643	"3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic"	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g30760.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.12016.3.S1_at	A	A1TS	POPTR_0008s17880	POPTR_0008s17880 (11)	scaffold_8:12019692-12020804(+) (11)	NA	P28643	"3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic"	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g30760.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.120199.1.A1_at	A	A1TS	POPTR_0004s21370	POPTR_0004s21370 (11)	scaffold_4:20525230-20525748(-) (11)	NA	NA	NA	AT5G22450.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73620.1	expressed protein	Medtr4g070070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1202.1.A1_at	A	A1TS	POPTR_0010s07600	POPTR_0010s07600 (11)	scaffold_10:8622078-8622412(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr1g065810.1	RNA-binding region RNP-1 (RNA recognition motif); Nuclear transport factor 2 	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.120213.1.S1_at	A	A1TS	POPTR_0008s17020	POPTR_0008s17020 (11)	scaffold_8:11452216-11454447(+) (11)	NA	P31049	Uncharacterized methyltransferase in lpd-3 5'region	AT3G23510.1	Cyclopropane-fatty-acyl-phospholipid synthase 	LOC_Os12g16650.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr1g064910.1	Cyclopropane-fatty-acyl-phospholipid synthase 	GO:0008610|lipid biosynthetic process	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity||GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
PtpAffx.120226.1.S1_at	A	A1MS	POPTR_0013s02210	POPTR_0013s02210 (11)	scaffold_13:1314377-1314923(-) (11)	NA	Q5H7P5	Mannosylglycoprotein endo-beta-mannosidase	AT1G09010.1	glycoside hydrolase family 2 protein 	LOC_Os05g32530.1	"mannosylglycoprotein endo-beta-mannosidase, putative, expressed"	Medtr1g099500.1	"Glycoside hydrolase family 2, sugar binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.120252.1.S1_s_at	A	A1TS	POPTR_0002s15610	POPTR_0002s15610 (11)	scaffold_2:11654812-11655109(+) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.120271.1.S1_at	A	A1TS	POPTR_0005s23320	POPTR_0005s23320 (11)	scaffold_5:22144227-22145460(-) (11)	NA	Q54UI3	tRNA (guanine-N(7)-)-methyltransferase subunit WDR4	AT1G03110.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g53530.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120287.1.S1_at	A	A1TS	POPTR_0014s15880	POPTR_0014s15880 (11)	scaffold_14:11967329-11967512(-) (11)	NA	Q8L633	"Ribonuclease Z, chloroplastic"	AT2G04530.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os09g30466.1	"nuclear ribonuclease Z, putative, expressed"	Medtr5g092020.1	"Nuclear ribonuclease Z, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120287.1.S1_s_at	A	A1TS	POPTR_0014s15880	POPTR_0014s15880 (11)	scaffold_14:11966445-11967334(-) (11)	NA	Q8L633	"Ribonuclease Z, chloroplastic"	AT2G04530.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os09g30466.1	"nuclear ribonuclease Z, putative, expressed"	Medtr5g092020.1	"Nuclear ribonuclease Z, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120301.1.S1_s_at	A	A1TS	POPTR_0001s37010	POPTR_0001s37010 (11)	scaffold_1:35834167-35834826(+) (11)	NA	O74462	Transcription initiation factor TFIID subunit 6	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59 	LOC_Os01g32750.1	"TATA binding protein-associated factor, putative, expressed"	Medtr7g026010.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0051090|regulation of transcription factor activity||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity||GO:0016986|transcription initiation factor activity	GO:0005634|nucleus
PtpAffx.120304.1.S1_s_at	A	A2TS	POPTR_0006s13640	POPTR_0006s13640 (11)//POPTR_0006s13650 (11)	scaffold_6:10859407-10860421(-) (11)//scaffold_6:10873700-10874688(-) (11)	NA	Q9SMZ4	Alpha-aminoadipic semialdehyde synthase	AT4G33150.2	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme 	LOC_Os02g54254.1	"saccharopine dehydrogenase, putative, expressed"	Medtr8g133370.1	"NAD(P) transhydrogenase, alpha subunit; Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme conserved region "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.120308.1.S1_s_at	A	A1TS	POPTR_0005s22600	POPTR_0005s22600 (11)	scaffold_5:21510521-21511065(-) (11)	NA	NA	NA	AT4G18260.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os05g49040.1	expressed protein	Medtr3g061440.1	Cytochrome b561 / ferric reductase transmembrane 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120312.1.S1_s_at	A	A1TS	POPTR_0001s18470	POPTR_0001s18470 (11)	scaffold_1:15521900-15522372(-) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.120315.1.S1_at	A	A1TS	POPTR_0001s28590	POPTR_0001s28590 (10)	scaffold_1:27359068-27360999(+) (10)	NA	Q91348	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase"	AT1G07110.1	"fructose-2,6-bisphosphatase "	LOC_Os05g07130.1	"6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed"	Medtr5g080220.1	"Fructose-2,6-bisphosphatase; "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0006000|fructose metabolic process	GO:0003873|6-phosphofructo-2-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.120317.1.S1_at	A	A1TS	POPTR_0015s00600	POPTR_0015s00600 (10)	scaffold_15:358625-359065(-) (10)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120325.1.S1_s_at	A	A1TS	POPTR_0013s07050	POPTR_0013s07050 (11)	scaffold_13:5756170-5757219(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os10g17260.1	"cytochrome P450, putative, expressed"	Medtr3g037120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.120333.1.S1_s_at	A	A2TS	POPTR_0001s18040	POPTR_0001s18040 (11)//POPTR_0003s05450 (11)	scaffold_1:15020672-15021218(-) (11)//scaffold_3:6719724-6720270(+) (11)	NA	Q94738	97 kDa heat shock protein	AT1G79920.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os01g08560.2	"DnaK family protein, putative, expressed"	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12036.2.S1_a_at	A	A1TS	POPTR_0014s11390	POPTR_0014s11390 (11)	scaffold_14:8486817-8487424(+) (11)	NA	NA	NA	AT3G62370.1	heme binding 	LOC_Os03g19580.1	expressed protein	Medtr1g106510.1	hypothetical protein 	GO:0055114|oxidation reduction	GO:0020037|heme binding	NA
PtpAffx.12036.4.A1_a_at	A	A1TS	POPTR_0014s11390	POPTR_0014s11390 (10)	scaffold_14:8486149-8487683(+) (10)	NA	NA	NA	AT3G62370.1	heme binding 	LOC_Os03g19580.1	expressed protein	Medtr1g106510.1	hypothetical protein 	GO:0055114|oxidation reduction	GO:0020037|heme binding	NA
PtpAffx.120369.1.S1_s_at	A	A1TS	POPTR_0006s06100	POPTR_0006s06100 (11)	scaffold_6:4339377-4339688(+) (11)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.2	glucuronidase 3 	LOC_Os06g08090.2	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.12037.1.A1_s_at	A	A1TS	POPTR_0016s03630	POPTR_0016s03630 (11)	scaffold_16:1985308-1985758(+) (11)	NA	Q9ZNZ7	"Ferredoxin-dependent glutamate synthase 1, chloroplastic"	AT5G04140.1	glutamate synthase 1 	LOC_Os07g46460.1	"ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0015930|glutamate synthase activity	NA
PtpAffx.12037.2.A1_at	A	A1TS	POPTR_0016s03630	POPTR_0016s03630 (9)	scaffold_16:1986044-1986215(+) (10)	NA	Q9ZNZ7	"Ferredoxin-dependent glutamate synthase 1, chloroplastic"	AT5G04140.1	glutamate synthase 1 	LOC_Os07g46460.1	"ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0015930|glutamate synthase activity	NA
PtpAffx.120370.1.S1_at	A	A1TS	POPTR_0011s02600	POPTR_0011s02600 (11)	scaffold_11:2501220-2501582(-) (11)	NA	NA	NA	AT1G30260.1	BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g115340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12038.1.S1_at	A	A1MS	POPTR_0018s10830	POPTR_0018s10830 (11)	scaffold_18:11709718-11710363(-) (11)	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os09g25850.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.12038.2.S1_at	A	A1TS	POPTR_0018s10830	POPTR_0018s10830 (11)	scaffold_18:11709362-11709559(-) (11)	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os09g25850.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.1204.1.A1_at	A	A1TS	POPTR_0007s12470	POPTR_0007s12470 (11)	scaffold_7:12778230-12778643(-) (11)	NA	Q6NLY8	HVA22-like protein k	AT4G36720.1	HVA22-like protein K 	LOC_Os07g38100.1	"HVA22, putative, expressed"	Medtr5g019610.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120421.1.A1_at	A	A1TS	POPTR_0002s00780	POPTR_0002s00780 (11)	scaffold_2:359520-360072(-) (11)	NA	Q8LC69	RING-H2 finger protein ATL8	AT1G76410.1	RING/U-box superfamily protein 	LOC_Os02g46100.1	"RING-H2 finger protein, putative, expressed"	Medtr5g024680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120425.1.A1_at	A	A1TS	POPTR_0001s05030	POPTR_0001s05030 (11)	scaffold_1:3882264-3882641(+) (11)	NA	Q9ZPV5	Nucleolar complex protein 2 homolog	AT2G18220.1	Noc2p family 	LOC_Os10g35280.1	"nucleolar complex protein 2, putative, expressed"	Medtr1g140790.1	Protein of unknown function UPF0120 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120427.1.A1_at	A	A1MS	POPTR_0015s04000	POPTR_0015s04000 (10)	scaffold_15:3893991-3894548(+) (10)	POPTR_0015s04030 (7)	Q40392	TMV resistance protein N	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.120439.1.A1_at	A	A1TS	POPTR_0003s12950	POPTR_0003s12950 (10)	scaffold_3:13368359-13368741(-) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT5G52430.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g57610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12044.1.S1_at	A	A1TS	POPTR_0008s14340	POPTR_0008s14340 (11)	scaffold_8:9516230-9516519(+) (11)	NA	NA	NA	AT2G02180.1	tobamovirus multiplication protein 3 	LOC_Os10g39220.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120454.1.A1_at	A	A1TS	POPTR_0001s11870	POPTR_0001s11870 (11)	scaffold_1:9208500-9208666(+) (11)	NA	Q38890	Endoglucanase 25	AT5G49720.1	glycosyl hydrolase 9A1 	LOC_Os03g21210.1	"endoglucanase, putative, expressed"	Medtr2g034060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.12049.1.A1_at	A	A1TS	POPTR_0003s07480	POPTR_0003s07480 (11)	scaffold_3:9026938-9027416(-) (11)	NA	Q75N33	Protein transport protein Sec16B	AT5G47490.1	RGPR-related 	LOC_Os02g01490.1	expressed protein	Medtr8g105690.1	N-6 Adenine-specific DNA methylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120497.2.A1_a_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (9)	scaffold_13:1653644-1653839(+) (9)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120497.2.A1_s_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (10)	scaffold_13:1653235-1653900(+) (10)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1205.3.S1_s_at	A	A1MS	POPTR_0006s09350	POPTR_0006s09350 (11)	scaffold_6:6879087-6879468(+) (11)	NA	NA	NA	AT5G02020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59080.1); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120529.1.A1_s_at	A	A1TS	POPTR_0013s11050	POPTR_0013s11050 (9)	scaffold_13:11706193-11711944(-) (11)	NA	NA	NA	AT1G22520.1	Domain of unknown function (DUF543) 	LOC_Os03g62420.1	expressed protein	Medtr3g012620.1	Protein of unknown function DUF543 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120534.1.A1_at	A	A1TS	POPTR_0010s08090	POPTR_0010s08090 (11)	scaffold_10:9023206-9023554(-) (11)	NA	NA	NA	AT5G43310.2	COP1-interacting protein-related 	LOC_Os03g64320.1	expressed protein	Medtr1g090340.1	"COP1-interacting protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120558.1.A1_at	A	A1TS	POPTR_0019s12070	POPTR_0019s12070 (9)	scaffold_19:13216059-13216458(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12056.3.S1_a_at	A	A1TS	POPTR_0019s07600	POPTR_0019s07600 (11)	scaffold_19:8682454-8683306(-) (11)	NA	P31687	4-coumarate--CoA ligase 2	AT1G65060.1	4-coumarate:CoA ligase 3 	LOC_Os02g46970.1	"AMP-binding domain containing protein, expressed"	Medtr5g007720.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.120577.1.A1_at	A	A1MS	POPTR_0017s09310	POPTR_0017s09310 (9)	scaffold_17:7925137-7925387(+) (9)//scaffold_18:2862541-2862791(+) (9)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12058.1.A1_s_at	A	A1TS	POPTR_0006s17720	POPTR_0006s17720 (11)	scaffold_6:15858106-15859994(-) (11)	NA	Q54Q39	Protein phosphatase 1 regulatory subunit pprA	AT5G19680.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g13640.1	"protein phosphatase 1 regulatory subunit SDS22, putative, expressed"	Medtr4g159610.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.120580.1.A1_a_at	A	A1TS	POPTR_0689s00200	POPTR_0689s00200 (11)	scaffold_13:11848027-11848194(+) (9)//scaffold_689:1154-1329(+) (11)	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr7g099470.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12059.1.S1_at	A	A1TS	POPTR_0008s10590	POPTR_0008s10590 (11)	scaffold_8:6637143-6637958(+) (11)	NA	O62664	Prostaglandin G/H synthase 1	AT3G01420.1	Peroxidase superfamily protein 	LOC_Os12g26290.2	"alpha-DOX2, putative, expressed"	Medtr4g155460.1	Animal haem peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.12060.1.S1_at	A	A1TS	POPTR_0011s03420	POPTR_0011s03420 (9)	scaffold_11:3530254-3530729(+) (9)	NA	O27710	Phosphosulfolactate synthase	AT4G21320.1	Aldolase-type TIM barrel family protein 	LOC_Os06g46900.1	"phosphosulfolactate synthase-related protein, putative, expressed"	NA	NA	GO:0019295|coenzyme M biosynthetic process	NA	NA
PtpAffx.12063.2.A1_at	A	A1TS	POPTR_0001s02640	POPTR_0001s02640 (11)	scaffold_1:2089075-2089440(+) (11)	NA	P54672	AP-2 complex subunit mu	AT5G46630.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os02g46510.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g014510.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.120654.1.A1_at	A	A1TS	POPTR_0010s05830	POPTR_0010s05830 (11)	scaffold_10:7281917-7282249(-) (11)	NA	Q9FXT4	Alpha-galactosidase	AT3G26380.1	Melibiase family protein 	LOC_Os01g33420.1	"glycosyl hydrolase family protein 27, putative, expressed"	Medtr2g114520.1	"Glycoside hydrolase, clan GH-D; Ricin B lectin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120672.1.A1_at	A	A1TS	POPTR_0015s15510	POPTR_0015s15510 (11)	scaffold_15:14751171-14751790(-) (11)	NA	Q9SA16	Protein PHLOEM PROTEIN 2-LIKE A9	AT1G10155.1	phloem protein 2-A10 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120676.1.S1_a_at	A	A1TS	POPTR_0012s02690	POPTR_0012s02690 (11)	scaffold_12:2219260-2219592(+) (11)	NA	Q5TYW4	Neuroblastoma-amplified sequence	AT5G24350.1	CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g13150.1	expressed protein	Medtr3g123460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120676.2.A1_at	A	A1TS	POPTR_0012s02690	POPTR_0012s02690 (10)	scaffold_12:2219145-2219670(+) (10)	NA	Q5TYW4	Neuroblastoma-amplified sequence	AT5G24350.1	CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g13150.1	expressed protein	Medtr3g123460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120681.1.A1_at	A	A1TS	POPTR_0014s01430	POPTR_0014s01430 (11)	scaffold_14:1384157-1384681(+) (11)	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	NA	NA	NA	NA	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.120706.1.A1_at	A	A1TS	POPTR_0005s09930	POPTR_0005s09930 (9)	scaffold_5:7036200-7036554(-) (9)	NA	P20024	Myb-related protein Zm1	AT1G79180.1	myb domain protein 63 	LOC_Os02g46780.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120709.1.A1_at	A	A1TS	POPTR_0006s01800	POPTR_0006s01800 (11)	scaffold_6:1088570-1088875(+) (11)	NA	Q9H6Q4	Cytosolic Fe-S cluster assembly factor NARFL	AT4G16440.1	ferredoxin hydrogenases 	LOC_Os03g53750.1	"nuclear prelamin A recognition factor, putative, expressed"	Medtr3g162950.1	Iron hydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120711.1.A1_at	A	A1TS	POPTR_0005s02070	POPTR_0005s02070 (10)	scaffold_5:1338127-1338548(-) (10)	NA	Q9SUJ1	Syntaxin-43	AT5G26980.2	syntaxin of plants 41 	LOC_Os06g02570.1	"syntaxin, putative, expressed"	Medtr1g100300.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.120725.1.A1_at	A	A1TS	POPTR_0002s19160	POPTR_0002s19160 (10)	scaffold_2:15087562-15088019(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120736.1.A1_s_at	A	A1TS	POPTR_0005s25310	POPTR_0005s25310 (11)	scaffold_5:23614444-23615091(+) (11)	NA	NA	NA	AT1G75400.1	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120736.2.A1_at	A	A1TS	POPTR_0002s03300	POPTR_0002s03300 (11)	scaffold_2:2021900-2022590(-) (11)	NA	NA	NA	AT1G75400.1	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120741.1.A1_at	A	A1TS	POPTR_0004s04630	POPTR_0004s04630 (11)	scaffold_4:3391006-3392618(+) (11)	NA	Q38741	Squamosa promoter-binding protein 1	AT2G33810.1	squamosa promoter binding protein-like 3 	LOC_Os04g46580.1	"OsSPL7 - SBP-box gene family member, expressed"	Medtr2g017680.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.12075.1.A1_at	A	A1TS	POPTR_0001s04510	POPTR_0001s04510 (11)	scaffold_1:3546755-3547223(+) (11)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.12076.1.A1_at	A	A1TS	POPTR_0012s10390	POPTR_0012s10390 (9)	scaffold_12:11180304-11180659(+) (10)	NA	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr7g018130.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.120760.1.A1_at	A	A1TS	POPTR_0008s11820	POPTR_0008s11820 (11)	scaffold_8:7573388-7575194(+) (11)	NA	O66119	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AT3G25860.1	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os08g33440.1	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	AC233660_8.1	Biotin/lipoyl attachment; Dihydrolipoamide succinyltransferase AC233660.2 38835-37267 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.120762.1.A1_at	A	A1TS	POPTR_0002s05910	POPTR_0002s05910 (11)	scaffold_2:3901176-3901656(-) (11)	NA	NA	NA	AT2G42975.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g47630.1	expressed protein	Medtr5g098430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120767.1.A1_at	A	A1TS	POPTR_0008s09990	POPTR_0008s09990 (11)	scaffold_8:6185013-6185472(-) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G48100.1	Pectin lyase-like superfamily protein 	LOC_Os05g20020.1	"polygalacturonase, putative, expressed"	Medtr2g037040.1	"Aminoacyl-tRNA synthetase, class I "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.120780.1.A1_at	A	A1MS	POPTR_0010s19270	POPTR_0010s19270 (10)	scaffold_10:17235951-17236457(+) (10)	NA	C0LGQ4	Probable LRR receptor-like serine/threonine-protein kinase MRH1	AT4G18640.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g48390.2	expressed protein	Medtr1g102890.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.120781.1.A1_at	A	A1TS	POPTR_0019s09050	POPTR_0019s09050 (11)	scaffold_19:10629803-10630247(+) (11)	NA	NA	NA	AT3G20260.1	Protein of unknown function (DUF1666) 	LOC_Os08g40820.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12079.1.S1_at	A	A1TS	POPTR_0018s02300	POPTR_0018s02300 (11)	scaffold_18:2053475-2054705(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT5G25170.1	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1208.1.S1_s_at	A	A1TS	POPTR_0005s00350	POPTR_0005s00350 (9)	scaffold_5:106986-107444(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g102990.1	"mucin 2, intestinal/tracheal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1208.2.A1_at	A	A1TS	POPTR_0013s00300	POPTR_0013s00300 (9)	scaffold_13:84962-85397(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr1g102990.1	"mucin 2, intestinal/tracheal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120802.1.A1_at	A	A1TS	POPTR_0001s20590	POPTR_0001s20590 (11)	scaffold_1:18584564-18586137(+) (11)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os01g08814.3	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120808.1.A1_at	A	A1TS	POPTR_0018s01460	POPTR_0018s01460 (11)	scaffold_18:1386594-1387055(+) (11)	NA	P0C1I7	Peptidyl-prolyl cis-trans isomerase cyp5	AT4G32420.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os02g10970.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr1g013450.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.120820.1.A1_at	A	A1TS	POPTR_0015s07000	POPTR_0015s07000 (11)	scaffold_15:8081446-8082605(-) (11)	NA	NA	NA	AT3G29760.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g01850.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g071320.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120827.1.A1_at	A	A1MS	POPTR_0004s18520	POPTR_0004s18520 (10)	scaffold_4:18375796-18376888(-) (11)	POPTR_0009s14100 (6)	Q5TAQ9	DDB1- and CUL4-associated factor 8	AT4G35140.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g39760.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g111430.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12083.1.A1_at	A	A1TS	POPTR_0006s00280	POPTR_0006s00280 (11)	scaffold_6:60701-61040(+) (11)	NA	P54567	Uncharacterized protein yqkD	AT4G17150.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g40730.1	"protein with a conserved N-terminal region, putative, expressed"	Medtr2g033450.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120834.1.A1_at	A	A1TS	POPTR_0017s07440	POPTR_0017s07440 (11)	scaffold_17:5758765-5759221(+) (9)//scaffold_17:5786396-5788515(+) (11)//scaffold_2000:1809-2265(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr5g073480.1	"Uncharacterized 24.1 kDa protein in LEF4-P33 intergenic region, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120844.1.A1_at	A	A1TS	POPTR_0012s10800	POPTR_0012s10800 (11)	scaffold_12:11506677-11507038(-) (11)	NA	Q00004	Signal recognition particle 68 kDa protein	AT5G61970.1	signal recognition particle-related / SRP-related 	LOC_Os08g23360.1	"signal recognition particle 68 kDa protein, putative, expressed"	Medtr4g152260.1	"Signal recognition particle 68 kDa protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120846.1.A1_at	A	A1TS	POPTR_0010s17440	POPTR_0010s17440 (11)	scaffold_10:16028188-16028670(+) (11)	NA	Q9C554	Expansin-A1	AT1G69530.2	expansin A1 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120846.1.A1_s_at	A	A1TS	POPTR_0010s17440	POPTR_0010s17440 (11)	scaffold_10:16028200-16028719(+) (11)	NA	Q9C554	Expansin-A1	AT1G69530.2	expansin A1 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12086.1.S1_a_at	A	A2TS	POPTR_0006s03100	POPTR_0006s03100 (11)//POPTR_0016s02950 (11)	scaffold_16:1488827-1489391(-) (11)//scaffold_6:1975119-1975689(-) (11)	NA	Q7SCY7	Protein sym-1	AT5G19750.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os11g03670.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr7g105450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.12086.1.S1_at	A	A1TS	POPTR_0006s03100	POPTR_0006s03100 (11)	scaffold_6:1974255-1975899(-) (11)	NA	Q7SCY7	Protein sym-1	AT5G19750.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os11g03670.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr7g105450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.12086.2.A1_at	A	A1TS	POPTR_0016s02950	POPTR_0016s02950 (11)	scaffold_16:1488005-1489367(-) (11)	NA	Q7SCY7	Protein sym-1	AT5G19750.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os11g03670.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr7g105450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.120868.1.A1_at	A	A1TS	POPTR_0014s16340	POPTR_0014s16340 (9)	scaffold_14:12450859-12451132(+) (9)	NA	Q9SJ41	Zinc finger CCCH domain-containing protein 18	AT2G05160.1	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os08g03310.4	"zinc finger family protein, putative, expressed"	Medtr5g102170.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.120873.1.A1_at	A	A1TS	POPTR_0008s13370	POPTR_0008s13370 (11)	scaffold_8:8779699-8780159(+) (11)	NA	NA	NA	AT1G67920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120874.1.A1_s_at	A	A1TS	POPTR_0005s07290	POPTR_0005s07290 (11)	scaffold_5:4939944-4940282(+) (11)	NA	P46668	Homeobox-leucine zipper protein ATHB-6	AT2G22430.1	homeobox protein 6 	LOC_Os09g29460.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g102220.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.120877.1.A1_at	A	A1TS	POPTR_0001s16600	POPTR_0001s16600 (11)	scaffold_1:13371364-13371704(-) (11)	NA	NA	NA	AT1G72390.1	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). 	LOC_Os10g25200.1	expressed protein	Medtr8g025570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120888.1.A1_at	A	A1MS	POPTR_0008s01320	POPTR_0008s01320 (11)	scaffold_8:643571-643923(+) (11)	NA	Q9CAF5	"ABC transporter I family member 6, chloroplastic"	AT3G10670.1	non-intrinsic ABC protein 7 	LOC_Os03g21490.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g161030.1	FeS assembly ATPase SufC 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.12089.1.A1_at	A	A1TS	POPTR_0005s12080	POPTR_0005s12080 (11)	scaffold_5:8874464-8874954(+) (11)	NA	NA	NA	AT1G75420.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g15780.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
PtpAffx.12089.2.A1_a_at	A	A1TS	POPTR_0005s12080	POPTR_0005s12080 (11)	scaffold_5:8872826-8873556(+) (11)	NA	NA	NA	AT1G75420.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g15780.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
PtpAffx.120896.1.A1_at	A	A1TS	POPTR_0012s12100	POPTR_0012s12100 (11)	scaffold_12:12382394-12383212(+) (11)	NA	Q9SA16	Protein PHLOEM PROTEIN 2-LIKE A9	AT1G10155.1	phloem protein 2-A10 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12091.1.S1_at	A	A1TS	POPTR_0003s08930	POPTR_0003s08930 (11)	scaffold_3:10223420-10226548(-) (11)	NA	NA	NA	AT4G17960.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46620.1); Has 46 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g03575.1	expressed protein	Medtr5g014500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120918.1.A1_at	A	A1TS	POPTR_0010s23370	POPTR_0010s23370 (11)	scaffold_10:19982551-19982645(+) (11)	NA	Q9SV36	Armadillo repeat-containing kinesin-like protein 1	AT3G54870.1	Armadillo/beta-catenin repeat family protein / kinesin motor family protein 	LOC_Os03g05820.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.120918.1.A1_s_at	A	A1TS	POPTR_0010s23370	POPTR_0010s23370 (11)	scaffold_10:19981999-19982562(+) (11)	NA	Q9SV36	Armadillo repeat-containing kinesin-like protein 1	AT3G54870.1	Armadillo/beta-catenin repeat family protein / kinesin motor family protein 	LOC_Os03g05820.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.12093.1.A1_at	A	A1TS	POPTR_0008s12400	POPTR_0008s12400 (11)	scaffold_8:8012106-8012422(+) (11)	NA	O60113	Uncharacterized amino-acid permease C15C4.04c	AT2G01170.1	bidirectional amino acid transporter 1 	LOC_Os01g42234.2	"amino acid permease family protein, putative, expressed"	AC235665_40.1	Amino acid/polyamine transporter I AC235665.2 219297-222930 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12094.1.A1_at	A	A1TS	POPTR_0018s11610	POPTR_0018s11610 (11)	scaffold_18:12281353-12282063(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G57970.2	DNA glycosylase superfamily protein 	LOC_Os04g42290.1	"methyladenine glycosylase, putative, expressed"	Medtr8g145370.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.120945.1.A1_at	A	A1MS	POPTR_0017s07230	POPTR_0017s07230 (9)	scaffold_17:5624671-5625076(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120951.1.A1_at	A	A1TS	POPTR_0019s15290	POPTR_0019s15290 (9)	scaffold_19:15826369-15826643(-) (9)	NA	NA	NA	AT2G30530.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 5513 Blast hits to 872 proteins in 154 species: Archae - 0; Bacteria - 30; Metazoa - 615; Fungi - 144; Plants - 149; Viruses - 12; Other Eukaryotes - 4563 (source: NCBI BLink). 	LOC_Os05g25070.1	expressed protein	Medtr3g083960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120962.1.A1_at	A	A1TS	POPTR_0017s02740	POPTR_0017s02740 (11)	scaffold_17:1955497-1955937(-) (11)	NA	O04491	Putative pentatricopeptide repeat-containing protein At1g09680	AT1G09680.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g38930.1	"pentatricopeptide, putative, expressed"	Medtr5g085730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12097.1.A1_at	A	A1TS	POPTR_0008s06820	POPTR_0008s06820 (11)	scaffold_8:4088664-4089039(+) (11)	NA	NA	NA	AT2G40080.1	Protein of unknown function (DUF1313) 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr3g093640.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120971.1.A1_at	A	A1TS	POPTR_0006s13270	POPTR_0006s13270 (11)	scaffold_6:10511009-10511558(-) (11)	NA	NA	NA	AT3G09730.1	unknown protein; Has 1171 Blast hits to 1097 proteins in 212 species: Archae - 14; Bacteria - 83; Metazoa - 583; Fungi - 105; Plants - 149; Viruses - 14; Other Eukaryotes - 223 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120973.1.A1_at	A	A1MS	POPTR_0010s04320	POPTR_0010s04320 (11)	scaffold_10:5365125-5365329(-) (11)	NA	Q8H157	Nitrate transporter 1.2	AT1G69850.1	nitrate transporter 1:2 	LOC_Os06g38294.1	"peptide transporter PTR2, putative, expressed"	Medtr5g039420.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.120993.1.A1_s_at	A	A1TS	POPTR_0009s03890	POPTR_0009s03890 (11)	scaffold_9:4454195-4454418(+) (11)	NA	NA	NA	AT5G59500.1	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases 	NA	NA	Medtr8g047820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120995.1.A1_at	A	A1TS	POPTR_0002s16440	POPTR_0002s16440 (9)	scaffold_2:12299807-12299977(-) (9)	NA	Q49YU2	Diacylglycerol kinase	AT2G46090.1	Diacylglycerol kinase family protein 	LOC_Os03g03400.1	"diacylglycerol kinase, putative, expressed"	Medtr7g088910.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.120999.1.S1_at	A	A1TS	POPTR_0016s01560	POPTR_0016s01560 (11)	scaffold_16:708210-708313(+) (11)	POPTR_0006s01170 (7)	Q3TIX9	U4/U6.U5 tri-snRNP-associated protein 2	AT4G22350.2	Ubiquitin C-terminal hydrolases superfamily protein 	LOC_Os09g24250.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr4g106790.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1210.1.S1_x_at	A	A1TS	POPTR_0017s14310	POPTR_0017s14310 (11)	scaffold_17:14417238-14418052(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12100.1.A1_at	A	A2TS	POPTR_0081s00220	POPTR_0081s00220 (11)//POPTR_0005s01530 (10)	scaffold_5:1001627-1003463(+) (10)//scaffold_81:32678-34483(-) (11)	NA	NA	NA	AT5G26800.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g19400.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121001.1.A1_at	A	A1TS	POPTR_0015s01720	POPTR_0015s01720 (11)	scaffold_15:1104568-1105094(-) (11)	NA	NA	NA	AT5G53440.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g124190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121004.1.A1_at	A	A1MS	POPTR_0014s11070	POPTR_0014s11070 (11)	scaffold_14:8239847-8240337(-) (11)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g61740.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g133620.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.121010.1.A1_at	A	A1TS	POPTR_0005s22630	POPTR_0005s22630 (11)	scaffold_5:21536939-21537023(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G59080.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g21040.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr5g098350.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121021.1.A1_at	A	A1MS	POPTR_0003s15350	POPTR_0003s15350 (11)	scaffold_3:15159158-15159525(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121023.1.A1_at	A	A1MA	POPTR_0003s17180	POPTR_0003s17180 (11)	scaffold_3:16621138-16621494(-) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121024.1.A1_at	A	A1TS	POPTR_0006s02510	POPTR_0006s02510 (9)	scaffold_6:1638545-1639038(+) (9)	NA	P32110	Probable glutathione S-transferase	AT3G09270.1	glutathione S-transferase TAU 8 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121029.1.A1_s_at	A	A1TS	POPTR_0010s25960	POPTR_0010s25960 (11)	scaffold_10:21373111-21374938(-) (11)	NA	NA	NA	AT2G03070.1	mediator subunit 8 	LOC_Os03g31010.1	expressed protein	Medtr5g014110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12103.1.S1_at	A	A1TS	POPTR_0017s07060	POPTR_0017s07060 (10)	scaffold_17:5482872-5484024(-) (10)	NA	Q93YW0	"Protein EXECUTER 1, chloroplastic"	AT4G33630.2	Protein of unknown function (DUF3506) 	LOC_Os10g34400.2	expressed protein	Medtr4g121190.1	hypothetical protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.121030.1.A1_at	A	A1TA	POPTR_0010s04890	POPTR_0010s04890 (11)	scaffold_10:6072823-6073052(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os02g12580.1	"OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed"	Medtr5g038210.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.121034.1.A1_at	A	A1TA	POPTR_0010s14800	POPTR_0010s14800 (10)	scaffold_10:14282862-14283087(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121036.1.A1_at	A	A1MS	POPTR_0001s10770	POPTR_0001s10770 (10)	scaffold_1:8381619-8382256(+) (10)	NA	Q8L7I1	Uncharacterized protein At4g10930	AT4G10930.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g10700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12104.1.S1_at	A	A1TS	POPTR_0006s01450	POPTR_0006s01450 (10)	scaffold_6:860543-860576(+) (10)//scaffold_6:878819-878852(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121045.1.A1_at	A	A1TS	POPTR_0007s05540	POPTR_0007s05540 (10)	scaffold_7:3611810-3613003(-) (10)	NA	Q94FB9	ABC transporter D family member 1	AT4G39850.3	peroxisomal ABC transporter 1 	LOC_Os01g73530.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g101500.1	Peroxysomal long chain fatty acyl transporter 	GO:0006810|transport	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.121047.1.A1_at	A	A1TS	POPTR_0013s13560	POPTR_0013s13560 (11)	scaffold_13:13997208-13997981(-) (11)	NA	NA	NA	AT1G03687.1	DTW domain-containing protein 	LOC_Os06g23504.2	"DTW domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121049.1.A1_at	A	A1TS	POPTR_0005s13950	POPTR_0005s13950 (11)	scaffold_5:10960253-10960472(+) (11)	NA	P49082	Guanine nucleotide-binding protein alpha-1 subunit	AT2G23460.1	extra-large G-protein 1 	LOC_Os12g40190.1	"G-protein alpha subunit, putative, expressed"	Medtr5g018540.2	"G-protein alpha subunit, group I "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121052.1.A1_at	A	A1TA	POPTR_0002s08720	POPTR_0002s08720 (10)	scaffold_2:6120830-6121106(-) (11)	NA	Q07512	Flavonol synthase/flavanone 3-hydroxylase	AT5G08640.2	flavonol synthase 1 	LOC_Os02g52840.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g097910.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.121064.1.A1_at	A	A1TS	POPTR_0010s05230	POPTR_0010s05230 (11)	scaffold_10:6699744-6700187(+) (11)	NA	Q9LDA9	"CRS2-associated factor 2, chloroplastic"	AT1G23400.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os01g21990.1	"CRS2-associated factor 2, chloroplast precursor, putative, expressed"	Medtr4g159520.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.121065.1.A1_at	A	A1TS	POPTR_0011s07690	POPTR_0011s07690 (11)	scaffold_11:8528119-8528484(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121067.1.A1_at	A	A1TS	POPTR_0018s09300	POPTR_0018s09300 (11)	scaffold_18:10175623-10176499(-) (11)	NA	Q54NM9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3	AT5G19690.1	staurosporin and temperature sensitive 3-like A 	LOC_Os05g44360.1	"oligosaccharyl transferase, putative, expressed"	Medtr1g143540.1	"Oligosaccharyl transferase, STT3 subunit "	GO:0006486|protein amino acid glycosylation	GO:0004576|oligosaccharyl transferase activity	GO:0016020|membrane
PtpAffx.12107.1.A1_at	A	A1TS	POPTR_0008s08850	POPTR_0008s08850 (11)	scaffold_8:5487920-5488167(-) (11)	NA	O49255	NAC domain-containing protein 29	AT1G69490.1	"NAC-like, activated by AP3/PI "	LOC_Os12g03040.1	"no apical meristem protein, putative, expressed"	Medtr5g045070.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.121079.1.A1_at	A	A1TS	POPTR_0008s09720	POPTR_0008s09720 (9)	scaffold_8:6003372-6003737(+) (9)	NA	Q8RU27	"Alpha-1,4-glucan-protein synthase [UDP-forming] 2"	AT3G08900.1	reversibly glycosylated polypeptide 3 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
PtpAffx.121081.1.A1_at	A	A1TS	POPTR_0017s11340	POPTR_0017s11340 (11)	scaffold_17:11099363-11099906(-) (11)	NA	Q54S83	"Protein midA, mitochondrial"	AT3G28700.1	Protein of unknown function (DUF185) 	LOC_Os01g40620.1	"Uncharacterized ACR, COG1565 containing protein, putative, expressed"	Medtr4g100910.1	Protein of unknown function DUF185 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121085.1.A1_at	A	A1TS	POPTR_0001s18260	POPTR_0001s18260 (11)	scaffold_1:15334407-15334539(+) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.121088.1.A1_at	A	A1MA	POPTR_0001s14850	POPTR_0001s14850 (9)	scaffold_1:11665859-11666857(+) (9)	NA	Q9SAI4	Aquaporin NIP6-1	AT1G80760.1	NOD26-like intrinsic protein 6;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.121088.2.A1_at	A	A1MA	POPTR_0001s14850	POPTR_0001s14850 (11)	scaffold_1:11665949-11666102(+) (11)	NA	Q9SAI4	Aquaporin NIP6-1	AT1G80760.1	NOD26-like intrinsic protein 6;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.121094.1.A1_at	A	A1TS	POPTR_0001s24920	POPTR_0001s24920 (11)	scaffold_1:24192005-24192332(+) (11)	NA	NA	NA	AT5G59500.1	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases 	NA	NA	Medtr8g047820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121096.1.A1_at	A	A1MS	POPTR_0008s14470	POPTR_0008s14470 (11)	scaffold_8:9605215-9605477(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121097.1.A1_at	A	A1TS	POPTR_0002s10610	POPTR_0002s10610 (11)	scaffold_2:7693340-7693575(-) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT1G58200.2	MSCS-like 3 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.121105.1.A1_at	A	A1TS	POPTR_0012s01540	POPTR_0012s01540 (10)	scaffold_12:1169031-1169215(+) (10)	NA	Q9FGM0	"ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial"	AT5G53170.1	FTSH protease 11 	LOC_Os01g43150.1	"OsFtsH9  FtsH protease, homologue of AtFtsH11, expressed"	Medtr3g139890.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.121110.1.A1_at	A	A1TS	POPTR_0007s03960	POPTR_0007s03960 (11)	scaffold_7:2363201-2364374(+) (11)	NA	Q91WM3	U3 small nucleolar RNA-interacting protein 2	AT4G05410.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g42770.1	expressed protein	AC234842_3.1	WD40 repeat AC234842.1 17142-14392 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121122.1.A1_at	A	A1TS	POPTR_0003s09630	POPTR_0003s09630 (11)	scaffold_3:10901670-10902095(-) (11)	NA	P23922	Transcription factor HBP-1a	AT2G35530.1	basic region/leucine zipper transcription factor 16 	LOC_Os12g13170.2	"transcription factor, putative, expressed"	Medtr5g028830.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.121138.1.A1_at	A	A1TS	POPTR_0001s23980	POPTR_0001s23980 (11)	scaffold_1:23359732-23361644(+) (11)	NA	Q8LCU7	"Probable trans-2-enoyl-CoA reductase, mitochondrial"	AT3G45770.1	"Polyketide synthase, enoylreductase family protein "	LOC_Os11g01154.4	"dehydrogenase, putative, expressed"	Medtr2g113810.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.121142.1.A1_s_at	A	A1TS	POPTR_0014s04250	POPTR_0014s04250 (11)	scaffold_14:3335020-3335349(-) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.121185.1.A1_at	A	A1TS	POPTR_0001s03930	POPTR_0001s03930 (10)	scaffold_1:3135877-3136147(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1212.1.A1_at	A	A1TS	POPTR_0012s00760	POPTR_0012s00760 (10)	scaffold_12:425907-426257(-) (10)	NA	Q84K00	NAC domain-containing protein 78	AT5G24590.2	TCV-interacting protein 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.1212.1.A1_s_at	A	A1TS	POPTR_0012s00760	POPTR_0012s00760 (11)	scaffold_12:425726-425997(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G24590.2	TCV-interacting protein 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.121212.1.A1_at	A	A1TS	POPTR_0005s18690	POPTR_0005s18690 (11)	scaffold_5:16931875-16932308(-) (11)	NA	O22187	Probable receptor-like protein kinase At2g23200	AT2G23200.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.121221.1.A1_at	A	A1TS	POPTR_0005s18530	POPTR_0005s18530 (10)	scaffold_5:16761295-16762001(-) (10)	NA	O48670	Protein RER1A	AT4G39220.1	Rer1 family protein 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr5g016490.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
PtpAffx.121222.1.A1_at	A	A1TS	POPTR_0008s06630	POPTR_0008s06630 (11)	scaffold_8:3972789-3974023(+) (11)	NA	Q5N892	Auxin transporter-like protein 1	AT5G01240.1	like AUXIN RESISTANT 1 	LOC_Os01g63770.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g024670.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121225.1.A1_at	A	A1TS	POPTR_0001s25550	POPTR_0001s25550 (11)	scaffold_1:24623242-24623427(+) (11)	NA	Q9SS80	"UPF0503 protein At3g09070, chloroplastic"	AT5G58930.1	Protein of unknown function (DUF740) 	LOC_Os01g63310.1	"DUF740 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121254.1.A1_at	A	A1TS	POPTR_0008s17100	POPTR_0008s17100 (11)	scaffold_1243:6021-6103(+) (11)//scaffold_8:11491626-11491708(-) (11)	NA	Q03389	Eukaryotic translation initiation factor 4E-2	AT5G35620.1	Eukaryotic initiation factor 4E protein 	LOC_Os10g32970.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr1g065250.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
PtpAffx.121256.1.A1_at	A	A1MS	POPTR_0008s09190	POPTR_0008s09190 (11)	scaffold_8:5687069-5687574(+) (11)	NA	NA	NA	AT1G69380.1	Protein of unknown function (DUF155) 	LOC_Os07g49410.1	"uncharacterized ACR, YagE family COG1723 containing protein, expressed"	Medtr5g046070.1	Protein of unknown function DUF155 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12126.1.A1_at	A	A1TS	POPTR_0004s22000	POPTR_0004s22000 (11)	scaffold_4:20954266-20954760(+) (11)	NA	NA	NA	AT3G45230.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g110460.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12126.2.A1_at	A	A1TA	POPTR_0004s22000	POPTR_0004s22000 (11)	scaffold_4:20953947-20954465(-) (11)	NA	NA	NA	AT3G45230.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g110460.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121264.1.A1_at	A	A1TS	POPTR_0013s13680	POPTR_0013s13680 (11)	scaffold_13:14102791-14102833(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121265.1.A1_s_at	A	A1TS	POPTR_0006s05550	POPTR_0006s05550 (11)	scaffold_6:3919575-3919611(-) (11)	NA	NA	NA	AT2G42320.2	nucleolar protein gar2-related 	LOC_Os08g39490.3	expressed protein	Medtr7g111110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12127.1.A1_at	A	A1TS	POPTR_0014s07030	POPTR_0014s07030 (11)	scaffold_14:5311963-5312971(-) (11)	NA	Q0KHU5	1-acylglycerophosphocholine O-acyltransferase 1	AT2G45670.1	calcineurin B subunit-related 	LOC_Os06g49790.1	"acyltransferase, putative, expressed"	AC233100_19.1	Calcium-binding EF-hand AC233100.6 72825-70913 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.121275.1.A1_at	A	A1MS	POPTR_0014s03580	POPTR_0014s03580 (11)	scaffold_14:2864228-2864663(+) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os12g30040.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr2g014200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121276.1.A1_at	A	A1TS	POPTR_0019s03920	POPTR_0019s03920 (11)	scaffold_19:3973866-3979390(+) (10)//scaffold_19:4000490-4001094(+) (11)	POPTR_0019s03900 (8)//POPTR_0019s03940 (7)//POPTR_0019s03890 (6)	Q9FYZ9	Benzoate carboxyl methyltransferase	AT5G04370.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50610.1	"SAM dependent carboxyl methyltransferase, putative, expressed"	Medtr5g020860.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.121282.1.A1_at	A	A1TS	POPTR_0005s17170	POPTR_0005s17170 (11)	scaffold_5:14325800-14326370(+) (11)	NA	Q9D2H9	Leucine-rich repeat-containing protein 50	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.12129.1.S1_at	A	A1TS	POPTR_0008s01530	POPTR_0008s01530 (11)	scaffold_8:757421-757937(+) (11)	NA	Q06850	Calcium-dependent protein kinase 1	AT5G04870.1	calcium dependent protein kinase 1 	LOC_Os03g57450.1	"CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.121292.1.A1_at	A	A1TS	POPTR_0005s18390	POPTR_0005s18390 (11)	scaffold_5:16560046-16561492(+) (11)	NA	Q5T2D3	OTU domain-containing protein 3	AT5G67170.1	SEC-C motif-containing protein / OTU-like cysteine protease family protein 	LOC_Os04g57480.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr2g107500.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1213.1.S1_a_at	A	A2TS	POPTR_0002s06160	POPTR_0002s06160 (11)//POPTR_0005s22280 (11)	scaffold_2:4118102-4118568(+) (11)//scaffold_5:21253722-21254183(-) (11)	NA	NA	NA	AT2G42840.1	protodermal factor 1 	LOC_Os01g52690.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g099070.1	"DNA-directed RNA polymerase II subunit RPB1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1213.3.A1_a_at	A	A1TS	POPTR_0005s22280	POPTR_0005s22280 (11)	scaffold_5:21254362-21254532(-) (11)	NA	NA	NA	AT2G42840.1	protodermal factor 1 	LOC_Os01g52690.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g099070.1	"DNA-directed RNA polymerase II subunit RPB1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1213.3.A1_at	A	A1MS	POPTR_0005s22280	POPTR_0005s22280 (11)	scaffold_5:21254584-21254817(-) (11)	NA	NA	NA	AT2G42840.1	protodermal factor 1 	LOC_Os01g52690.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g099070.1	"DNA-directed RNA polymerase II subunit RPB1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121304.1.S1_s_at	A	A1TS	POPTR_0010s14810	POPTR_0010s14810 (10)	scaffold_10:14287336-14288270(+) (10)	NA	Q9JHB5	Translin-associated protein X	AT2G03780.1	Translin family protein 	LOC_Os01g16100.1	"translin, putative, expressed"	Medtr8g077500.1	Translin 	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.121305.1.A1_at	A	A1TS	POPTR_0007s15240	POPTR_0007s15240 (11)	scaffold_7:14852804-14853532(+) (11)	NA	NA	NA	AT1G78930.1	Mitochondrial transcription termination factor family protein 	LOC_Os09g38720.1	"mTERF domain containing protein, expressed"	Medtr4g095610.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121321.1.A1_at	A	A1TS	POPTR_0004s21790	POPTR_0004s21790 (11)	scaffold_4:20792791-20793549(-) (11)	NA	Q99JW2	Aminoacylase-1	AT4G38220.2	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046740.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.121340.1.A1_a_at	A	A1TS	POPTR_0019s05790	POPTR_0019s05790 (11)	scaffold_19:6196435-6196505(+) (11)	NA	Q59MG1	Diphthamide biosynthesis protein 1	AT5G62030.1	diphthamide synthesis DPH2 family protein 	LOC_Os02g57050.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr5g008080.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121340.1.A1_at	A	A1TS	POPTR_0019s05790	POPTR_0019s05790 (11)	scaffold_19:6198315-6198588(+) (11)	NA	Q59MG1	Diphthamide biosynthesis protein 1	AT5G62030.1	diphthamide synthesis DPH2 family protein 	LOC_Os02g57050.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr5g008080.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121346.1.A1_at	A	A1MS	POPTR_0009s02040	POPTR_0009s02040 (11)	scaffold_9:2666251-2666707(-) (11)	NA	Q680Q4	E3 SUMO-protein ligase SIZ1	AT5G60410.5	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr4g080810.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.121349.1.A1_at	A	A1TS	POPTR_0006s09500	POPTR_0006s09500 (11)	scaffold_6:6982677-6983103(+) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT3G54030.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121349.2.A1_at	A	A1TS	POPTR_0016s09970	POPTR_0016s09970 (10)	scaffold_16:8099691-8099732(-) (10)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT3G54030.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121349.2.A1_s_at	A	A1TS	POPTR_0016s09970	POPTR_0016s09970 (11)	scaffold_16:8099265-8099704(-) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT3G54030.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121350.1.S1_at	A	A1TS	POPTR_0010s24110	POPTR_0010s24110 (11)	scaffold_10:20484465-20485919(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G03730.1	Protein kinase superfamily protein 	LOC_Os02g32610.3	"protein kinase domain containing protein, expressed"	Medtr5g075410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.121356.1.A1_at	A	A1MS	POPTR_0006s02840	POPTR_0006s02840 (11)	scaffold_6:1786138-1786269(-) (11)	NA	Q93YF5	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1"	AT1G73100.1	SU(VAR)3-9 homolog 3 	LOC_Os05g41172.2	"histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed"	Medtr7g105180.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.121359.1.A1_s_at	A	A1TS	POPTR_0006s26120	POPTR_0006s26120 (11)	scaffold_6:24390357-24391835(-) (11)	NA	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os01g08550.1	"aminoacyl-tRNA synthetase, putative, expressed"	Medtr3g135760.1	"aminoacyl-tRNA synthetase family, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121369.1.A1_at	A	A1TS	POPTR_0013s00860	POPTR_0013s00860 (11)	scaffold_13:433040-435020(-) (11)	NA	B5DEQ3	Probable Xaa-Pro aminopeptidase 3	AT1G09300.1	Metallopeptidase M24 family protein 	LOC_Os12g37640.1	"xaa-Pro aminopeptidase, putative, expressed"	NA	NA	GO:0009987|cellular process	GO:0004177|aminopeptidase activity||GO:0030145|manganese ion binding	NA
PtpAffx.121380.1.A1_at	A	A1TS	POPTR_0014s16780	POPTR_0014s16780 (11)	scaffold_14:12852617-12853765(+) (11)	NA	NA	NA	AT3G07660.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os09g08670.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g077880.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121381.1.A1_at	A	A1TS	POPTR_0010s04710	POPTR_0010s04710 (11)	scaffold_10:5816635-5816989(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121383.1.A1_at	A	A1TS	POPTR_0004s23580	POPTR_0004s23580 (11)	scaffold_4:22259844-22260547(+) (11)	NA	Q69ZF3	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.121389.1.A1_at	A	A1TS	POPTR_0014s15060	POPTR_0014s15060 (11)	scaffold_14:11130032-11130507(-) (11)//scaffold_14:11154927-11155402(-) (11)	NA	Q8GXJ4	Glutamate receptor 3.4	AT1G05200.2	glutamate receptor 3.4 	LOC_Os07g33790.1	"glutamate receptor 3.4 precursor, putative, expressed"	Medtr2g103920.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121396.1.A1_at	A	A1MS	POPTR_0009s15330	POPTR_0009s15330 (9)	scaffold_9:11889215-11889913(-) (10)	NA	P27237	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121406.1.A1_at	A	A1MS	POPTR_0018s12190	POPTR_0018s12190 (11)	scaffold_18:12745554-12746008(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121406.1.A1_s_at	A	A1TS	POPTR_0018s12190	POPTR_0018s12190 (10)	scaffold_18:12745446-12745940(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121418.1.A1_s_at	A	A1TS	POPTR_0006s07240	POPTR_0006s07240 (11)	scaffold_6:5198384-5198901(-) (11)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.121418.2.A1_at	A	A1TS	POPTR_0006s07240	POPTR_0006s07240 (11)	scaffold_6:5198907-5199092(-) (11)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.121420.1.A1_at	A	A1TS	POPTR_0003s05550	POPTR_0003s05550 (9)	scaffold_3:6874357-6874730(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121428.1.A1_s_at	A	A1TS	POPTR_0003s13720	POPTR_0003s13720 (11)	scaffold_3:14029503-14029719(+) (11)	NA	NA	NA	AT5G41790.1	COP1-interactive protein 1 	NA	NA	Medtr5g009510.1	hypothetical protein 	GO:0016032|viral reproduction	NA	NA
PtpAffx.121441.1.A1_at	A	A1TS	POPTR_0001s12260	POPTR_0001s12260 (11)	scaffold_1:9496373-9496840(+) (11)	NA	Q8WV16	DDB1- and CUL4-associated factor 4	AT5G17370.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g01730.1	"WD-40 repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121447.1.S1_at	A	A1TS	POPTR_0011s15660	POPTR_0011s15660 (11)	scaffold_11:17752863-17753589(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.121458.1.A1_at	A	A1TS	POPTR_0011s13370	POPTR_0011s13370 (11)	scaffold_11:16130490-16130524(-) (11)	NA	Q9LHQ7	mRNA cap guanine-N7 methyltransferase 1	AT3G20650.1	mRNA capping enzyme family protein 	LOC_Os08g08200.1	"mRNA cap guanine-N7 methyltransferase 1, putative, expressed"	Medtr7g133520.1	"mRNA capping enzyme, large subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0008168|methyltransferase activity	NA
PtpAffx.121458.1.A1_s_at	A	A1TS	POPTR_0011s13370	POPTR_0011s13370 (11)	scaffold_11:16130306-16131498(-) (11)	NA	Q9LHQ7	mRNA cap guanine-N7 methyltransferase 1	AT3G20650.1	mRNA capping enzyme family protein 	LOC_Os08g08200.1	"mRNA cap guanine-N7 methyltransferase 1, putative, expressed"	Medtr7g133520.1	"mRNA capping enzyme, large subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0008168|methyltransferase activity	NA
PtpAffx.12146.1.A1_a_at	A	A1TS	POPTR_0006s26660	POPTR_0006s26660 (11)	scaffold_6:24812041-24812635(+) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.12146.2.A1_at	A	A1TS	POPTR_0006s26650	POPTR_0006s26650 (11)	scaffold_6:24806390-24806427(-) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.12146.3.A1_at	A	A1TS	POPTR_0018s01400	POPTR_0018s01400 (11)	scaffold_18:1350675-1350871(-) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.12146.6.A1_at	A	A1TS	POPTR_0006s26650	POPTR_0006s26650 (10)	scaffold_6:24806617-24806682(-) (10)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.121479.1.A1_at	A	A1MS	POPTR_0017s08300	POPTR_0017s08300 (11)	scaffold_17:6757970-6758886(-) (11)	NA	Q9SFU3	Purple acid phosphatase 15	AT3G07130.1	purple acid phosphatase 15 	LOC_Os03g63074.2	"Ser/Thr protein phosphatase family protein, expressed"	Medtr3g105420.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.12148.1.S1_at	A	A1TS	POPTR_0003s09390	POPTR_0003s09390 (11)	scaffold_3:10687056-10687685(+) (11)	NA	Q60GF7	Phosphatidylinositol-glycan biosynthesis class X protein	AT5G46850.3	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233). "	LOC_Os12g40500.2	expressed protein	Medtr8g077670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121495.1.A1_at	A	A1TS	POPTR_0003s10850	POPTR_0003s10850 (11)	scaffold_3:11712493-11712718(-) (11)	NA	P83436	Conserved oligomeric Golgi complex subunit 7	AT5G51430.1	conserved oligomeric Golgi complex component-related / COG complex component-related 	LOC_Os06g45830.1	expressed protein	Medtr6g005500.1	"conserved oligomeric Golgi complex component 7-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121503.1.A1_s_at	A	A1TS	POPTR_0008s09640	POPTR_0008s09640 (11)	scaffold_8:5956616-5958872(+) (11)	NA	Q14562	ATP-dependent RNA helicase DHX8	AT1G26370.1	RNA helicase family protein 	LOC_Os06g09280.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.121507.1.A1_at	A	A1MA	POPTR_0008s08700	POPTR_0008s08700 (11)	scaffold_8:5371294-5371790(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121515.1.A1_at	A	A2TS	POPTR_0001s25680	POPTR_0009s04830 (11)//POPTR_0001s25680 (11)	scaffold_1:24732665-24732998(+) (11)//scaffold_9:5071102-5071442(+) (11)	NA	P48422	Cytochrome P450 86A1	AT5G58860.1	"cytochrome P450, family 86, subfamily A, polypeptide 1 "	LOC_Os01g63540.1	"cytochrome P450, putative, expressed"	Medtr5g078460.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.121536.1.A1_at	A	A1TS	POPTR_0008s20510	POPTR_0008s20510 (11)	scaffold_8:14271527-14272618(+) (11)	NA	Q6IQ16	Speckle-type POZ protein-like	AT3G06190.1	BTB-POZ and MATH domain 2 	LOC_Os07g46160.1	"MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.121543.1.A1_at	A	A1TS	POPTR_0019s12320	POPTR_0019s12320 (11)	scaffold_19:13380440-13380984(-) (11)	NA	O49675	"Probable carotenoid cleavage dioxygenase 4, chloroplastic"	AT4G19170.1	nine-cis-epoxycarotenoid dioxygenase 4 	LOC_Os02g47510.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121547.1.A1_at	A	A1TS	POPTR_0003s16730	POPTR_0003s16730 (11)	scaffold_3:16261773-16261933(+) (11)	NA	Q9Y222	Cyclin-D-binding Myb-like transcription factor 1	AT5G41020.1	myb family transcription factor 	LOC_Os06g19980.1	"MYB family transcription factor, putative, expressed"	Medtr8g093700.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121550.1.A1_s_at	A	A1TS	POPTR_0014s01970	POPTR_0014s01970 (11)	scaffold_14:1760705-1760756(-) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC232874_16.1	"VEP1 ; binding, putative AC232874.1 54537-55990 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121556.1.A1_at	A	A1TS	POPTR_0014s09610	POPTR_0014s09610 (11)	scaffold_14:7170578-7170644(+) (11)	NA	Q9ZPY2	Laccase-6	AT2G46570.1	laccase 6 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g078230.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.121560.1.A1_at	A	A1TS	POPTR_0007s07110	POPTR_0007s07110 (11)	scaffold_7:5434422-5434910(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121561.1.A1_at	A	A1TS	POPTR_0002s09090	POPTR_0002s09090 (11)	scaffold_2:6430813-6431295(-) (11)	NA	NA	NA	AT1G22030.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g01400.1	expressed protein	Medtr4g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121567.1.A1_at	A	A1TS	POPTR_0005s15290	POPTR_0005s15290 (11)	scaffold_5:12040344-12040777(+) (11)	NA	Q6DEY3	Abhydrolase domain-containing protein FAM108B1	AT5G38220.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g49510.1	"OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121590.1.A1_s_at	A	A1TS	POPTR_0008s17920	POPTR_0008s17920 (11)	scaffold_8:12030376-12030833(-) (11)	NA	Q6GNY1	E3 ubiquitin-protein ligase mib1	AT3G01750.1	Ankyrin repeat family protein 	LOC_Os05g23320.2	expressed protein	Medtr3g103280.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121599.1.A1_at	A	A1TS	POPTR_0009s07300	POPTR_0009s07300 (11)	scaffold_9:6847041-6849804(-) (11)	NA	P34893	10 kDa chaperonin	AT1G14980.1	chaperonin 10 	LOC_Os03g25050.1	"chaperonin, putative, expressed"	AC225518_13.1	GroES-like AC225518.12 38278-37581 E EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.121609.1.A1_at	A	A1TS	POPTR_0002s12020	POPTR_0002s12020 (11)	scaffold_2:8939984-8940506(+) (11)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g015970.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121626.1.A1_at	A	A1TS	POPTR_0010s17650	POPTR_0010s17650 (11)	scaffold_10:16157553-16157989(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G69600.1	zinc finger homeodomain  1 	LOC_Os09g24820.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr7g009640.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121632.1.A1_s_at	A	A1TS	POPTR_0019s05380	POPTR_0019s05380 (10)	scaffold_19:5722691-5722973(-) (10)	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.121639.1.A1_s_at	A	A1TS	POPTR_0005s10350	POPTR_0005s10350 (11)	scaffold_5:7425424-7426700(+) (11)	NA	A1L244	Phosphatidylinositide phosphatase SAC1-A	AT3G51460.1	Phosphoinositide phosphatase family protein 	LOC_Os02g34884.1	"SacI homology domain containing protein, expressed"	Medtr5g023860.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121651.1.A1_at	A	A1TS	POPTR_0015s04600	POPTR_0015s04600 (10)	scaffold_15:4804821-4805040(-) (10)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121654.1.A1_at	A	A1TS	POPTR_0001s02140	POPTR_0001s02140 (11)	scaffold_1:1587014-1587301(-) (11)	NA	Q9LQM7	Heat stress transcription factor A-1d	AT1G32330.1	heat shock transcription factor A1D 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.121661.1.A1_s_at	A	A1TS	POPTR_0012s07900	POPTR_0012s07900 (11)	scaffold_12:8885540-8886216(+) (11)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50850.1	"BAH domain containing protein, putative, expressed"	Medtr4g149410.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.12167.1.S1_at	A	A1MS	POPTR_0010s17130	POPTR_0010s17130 (10)	scaffold_10:15858676-15859157(-) (10)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G69450.2	Early-responsive to dehydration stress protein (ERD4) 	LOC_Os12g39320.1	"DUF221 domain containing protein, expressed"	Medtr5g045580.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.121690.1.A1_at	A	A1TS	POPTR_0001s05620	POPTR_0001s05620 (10)	scaffold_1:4343890-4344170(+) (10)	NA	Q940Q3	Zinc transporter ZTP29	AT3G20870.1	ZIP metal ion transporter family 	LOC_Os02g10230.1	"metal cation transporter, putative, expressed"	Medtr4g087400.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.121699.1.A1_at	A	A1TS	POPTR_0012s01190	POPTR_0012s01190 (11)	scaffold_12:810623-813410(+) (11)	NA	NA	NA	AT5G52960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3143 (InterPro:IPR021489); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g49410.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121700.1.A1_at	A	A1MS	POPTR_0008s15930	POPTR_0008s15930 (11)	scaffold_8:10627899-10628310(-) (11)	NA	NA	NA	AT3G55760.3	unknown protein; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2). 	LOC_Os11g37560.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121714.1.S1_at	A	A1TS	POPTR_0002s09000	POPTR_0002s09000 (11)	scaffold_2:6374915-6375325(+) (11)	NA	Q9NQC1	Protein Jade-2	AT1G77800.2	PHD finger family protein 	LOC_Os02g52960.1	"PHD-finger domain containing protein, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.121730.1.A1_at	A	A1TS	POPTR_0007s11830	POPTR_0007s11830 (10)	scaffold_7:12214520-12214770(+) (10)	NA	Q8LGM7	Molybdenum cofactor sulfurase	AT2G23520.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g55704.1	expressed protein	Medtr1g129690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12176.1.S1_a_at	A	A1TS	POPTR_0013s06850	POPTR_0013s06850 (11)	scaffold_13:5538815-5539838(+) (11)	NA	O04350	Tubulin-specific chaperone A	AT2G30410.2	tubulin folding cofactor A (KIESEL) 	LOC_Os02g57150.1	"tubulin-specific chaperone A, putative, expressed"	Medtr5g101740.1	Tubulin binding cofactor A 	GO:0007021|tubulin complex assembly	GO:0051082|unfolded protein binding	GO:0005874|microtubule
PtpAffx.12176.2.A1_at	A	A1TS	POPTR_0013s06920	POPTR_0013s06920 (10)	scaffold_13:5615280-5617024(+) (10)	NA	Q923G2	"DNA-directed RNA polymerases I, II, and III subunit RPABC3"	AT3G59600.1	RNA polymerase Rpb8 	LOC_Os06g48230.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed"	Medtr8g147760.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
PtpAffx.12176.4.A1_a_at	A	A1TS	POPTR_0013s06850	POPTR_0013s06850 (11)	scaffold_13:5538572-5539689(+) (11)	NA	O04350	Tubulin-specific chaperone A	AT2G30410.2	tubulin folding cofactor A (KIESEL) 	LOC_Os02g57150.1	"tubulin-specific chaperone A, putative, expressed"	Medtr5g101740.1	Tubulin binding cofactor A 	GO:0007021|tubulin complex assembly	GO:0051082|unfolded protein binding	GO:0005874|microtubule
PtpAffx.121761.1.A1_at	A	A1MS	POPTR_0004s21820	POPTR_0004s21820 (11)	scaffold_4:20818277-20818530(+) (11)	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g106900.1	"Protein of unknown function DUF1981, SEC7 associated "	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.121774.1.A1_at	A	A1TS	POPTR_0001s33200	POPTR_0001s33200 (11)	scaffold_1:31400062-31400738(-) (11)	NA	O04147	Cyclic phosphodiesterase	AT4G18930.1	RNA ligase/cyclic nucleotide phosphodiesterase family protein 	LOC_Os05g44170.1	"cyclic phosphodiesterase, putative, expressed"	Medtr4g136340.1	Appr>p cyclic nucleotide phosphodiesterase 	NA	GO:0004112|cyclic-nucleotide phosphodiesterase activity	NA
PtpAffx.121779.1.S1_at	A	A1TS	POPTR_0010s00780	POPTR_0010s00780 (9)	scaffold_10:488453-489861(+) (9)	NA	Q9LRZ3	Pumilio homolog 24	AT3G16810.1	pumilio 24 	LOC_Os03g61560.1	expressed protein	NA	NA	NA	GO:0003723|RNA binding	NA
PtpAffx.121787.1.A1_at	A	A1TS	POPTR_0016s08640	POPTR_0016s08640 (11)	scaffold_16:6456941-6457334(+) (11)	NA	Q9LYZ7	E3 ubiquitin-protein ligase UPL4	AT5G02880.1	ubiquitin-protein ligase 4 	LOC_Os05g03100.1	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.12180.1.A1_at	A	A1TS	POPTR_0002s21550	POPTR_0002s21550 (11)	scaffold_2:18067374-18067770(-) (11)	NA	Q8RW96	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	AT4G15415.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g62730.3	"transposon protein, putative, unclassified, expressed"	Medtr3g110300.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.12180.2.S1_at	A	A1TS	POPTR_0014s15520	POPTR_0014s15520 (11)	scaffold_14:11556702-11557084(-) (11)	NA	Q8RW96	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	AT4G15415.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g62730.3	"transposon protein, putative, unclassified, expressed"	Medtr3g110300.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121812.1.A1_at	A	A1TS	POPTR_0019s02680	POPTR_0019s02680 (11)	scaffold_19:2482868-2483063(+) (11)//scaffold_19:2556262-2556461(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121821.1.S1_at	A	A1TS	POPTR_0011s15230	POPTR_0011s15230 (11)	scaffold_11:17342685-17343277(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT1G33060.2	NAC 014 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr3g122340.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.12184.1.S1_a_at	A	A1TS	POPTR_0010s00680	POPTR_0010s00680 (11)	scaffold_10:389095-389148(+) (11)	NA	Q8W191	Transcription factor HY5-like	AT3G17609.2	HY5-homolog 	LOC_Os02g10860.1	bZIP transcription factor domain containing protein	AC146793_14.1	"bZIP transcription factor, bZIP_1 AC146793.7 78592-81181 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.12184.1.S1_at	A	A1TS	POPTR_0010s00680	POPTR_0010s00680 (11)	scaffold_10:389287-389571(+) (11)	NA	Q8W191	Transcription factor HY5-like	AT3G17609.2	HY5-homolog 	LOC_Os02g10860.1	bZIP transcription factor domain containing protein	AC146793_14.1	"bZIP transcription factor, bZIP_1 AC146793.7 78592-81181 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.121872.1.S1_at	A	A1TS	POPTR_0005s15220	POPTR_0005s15220 (11)	scaffold_5:11986519-11987024(+) (11)	NA	Q9ZDC7	Putative glutamine amidotransferase-like protein RP404	AT5G38200.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os01g04620.3	"transposon protein, putative, unclassified, expressed"	Medtr7g093720.1	Peptidase C26 	GO:0006541|glutamine metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.121878.1.S1_at	A	A1TS	POPTR_0011s05750	POPTR_0011s05750 (9)	scaffold_11:5735766-5736153(-) (9)	NA	P32456	Interferon-induced guanylate-binding protein 2	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	GO:0006955|immune response	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.121886.1.S1_at	A	A1TS	POPTR_0012s12380	POPTR_0012s12380 (9)	scaffold_12:12667382-12670433(-) (9)	NA	Q949Q1	Probable galacturonosyltransferase 11	AT1G18580.1	galacturonosyltransferase 11 	LOC_Os03g30000.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g018990.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.121896.1.A1_at	A	A1TS	POPTR_0010s06490	POPTR_0010s06490 (9)	scaffold_10:7837898-7838248(-) (9)	NA	NA	NA	AT1G67660.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os04g40900.1	"exonuclease, putative"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121917.1.S1_s_at	A	A1TS	POPTR_0013s06710	POPTR_0013s06710 (11)	scaffold_13:5422576-5422832(+) (11)	NA	O80360	"50S ribosomal protein L3, chloroplastic (Fragment)"	AT2G43030.1	Ribosomal protein L3 family protein 	LOC_Os02g04460.1	"ribosomal protein L3, putative, expressed"	Medtr3g163790.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.12192.1.S1_at	A	A1TS	POPTR_0010s23710	POPTR_0010s23710 (11)	scaffold_10:20204227-20204647(-) (11)	NA	Q80WA4	RNA-binding protein Nova-1 (Fragment)	AT5G04430.1	binding to TOMV RNA 1L (long form) 	LOC_Os02g57640.1	"KH domain containing protein, putative, expressed"	AC235664_4.1	"KH, type 1 AC235664.1 14232-10980 E EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.12192.2.A1_at	A	A1TS	POPTR_0008s03070	POPTR_0008s03070 (11)	scaffold_8:1615967-1616405(+) (11)	NA	Q80WA4	RNA-binding protein Nova-1 (Fragment)	AT5G04430.1	binding to TOMV RNA 1L (long form) 	LOC_Os02g57640.1	"KH domain containing protein, putative, expressed"	AC235664_4.1	"KH, type 1 AC235664.1 14232-10980 E EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.12192.3.S1_at	A	A1TS	POPTR_0008s03070	POPTR_0008s03070 (11)	scaffold_8:1611972-1612917(+) (11)	NA	Q80WA4	RNA-binding protein Nova-1 (Fragment)	AT5G04430.1	binding to TOMV RNA 1L (long form) 	LOC_Os02g57640.1	"KH domain containing protein, putative, expressed"	AC235664_4.1	"KH, type 1 AC235664.1 14232-10980 E EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.12193.1.A1_at	A	A1TS	POPTR_0006s27210	POPTR_0006s27210 (11)	scaffold_6:25193897-25194092(-) (11)	NA	NA	NA	AT4G32160.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr3g137530.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.121931.1.S1_at	A	A1TS	POPTR_0001s01560	POPTR_0001s01560 (9)	scaffold_1:1164363-1164704(-) (9)	NA	Q9SAK5	Myb family transcription factor APL	AT5G45580.1	Homeodomain-like superfamily protein 	LOC_Os02g47190.1	"MYB family transcription factor, putative, expressed"	Medtr5g027610.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12194.1.A1_at	A	A1TS	POPTR_0004s12070	POPTR_0004s12070 (9)	scaffold_4:10979766-10980119(-) (9)//scaffold_996:557-910(-) (9)	NA	O67577	tRNA guanosine-2'-O-methyltransferase	AT5G15390.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os07g40700.2	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr7g011700.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.121966.1.S1_s_at	A	A1TS	POPTR_0019s11710	POPTR_0019s11710 (11)	scaffold_19:12956501-12957115(-) (11)	NA	Q7YR70	Angio-associated migratory cell protein	AT1G71840.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g48090.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g134960.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122007.1.S1_s_at	A	A1TS	POPTR_0010s12960	POPTR_0010s12960 (11)	scaffold_10:12888116-12890330(-) (11)	NA	Q05AM5	Elongator complex protein 2	AT1G49540.1	elongator protein 2 	LOC_Os08g38570.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12201.1.S1_at	A	A1TS	POPTR_0022s00670	POPTR_0022s00670 (11)	scaffold_22:307963-308578(-) (11)	NA	P35684	60S ribosomal protein L3	AT1G61580.1	R-protein L3 B 	LOC_Os11g06750.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.122044.1.S1_s_at	A	A1TS	POPTR_0004s24440	POPTR_0004s24440 (11)	scaffold_4:23109785-23111823(-) (11)	NA	Q8VZ67	Uncharacterized zinc finger CCHC domain-containing protein At4g19190	AT4G19190.1	zinc knuckle (CCHC-type) family protein 	LOC_Os06g49510.1	"zinc knuckle family protein, putative, expressed"	Medtr2g047090.1	"zinc knuckle family protein, putative "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.122051.1.S1_s_at	A	A1TS	POPTR_0014s12480	POPTR_0014s12480 (11)	scaffold_14:9190181-9190925(+) (11)	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122058.1.S1_at	A	A1TS	POPTR_0004s02720	POPTR_0004s02720 (11)	scaffold_4:1817720-1818235(+) (11)	NA	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT4G21380.1	receptor kinase 3 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011240.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12206.1.S1_s_at	A	A1TS	POPTR_0017s14520	POPTR_0017s14520 (11)	scaffold_17:14542316-14542633(-) (11)	NA	Q8L7E5	WPP domain-interacting tail-anchored protein 1	AT5G11390.1	WPP domain-interacting protein 1 	LOC_Os05g15140.1	expressed protein	Medtr7g015720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122079.1.S1_at	A	A1TS	POPTR_0001s20920	POPTR_0001s20920 (11)	scaffold_1:19139006-19143199(+) (11)	NA	NA	NA	AT3G15920.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr2g126770.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.122082.1.S1_at	A	A1TS	POPTR_0009s13540	POPTR_0009s13540 (10)	scaffold_9:10754886-10755912(+) (10)	NA	Q8LDP4	Peptidyl-prolyl cis-trans isomerase CYP19-4	AT4G34960.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g36670.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr3g093650.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.122088.1.S1_at	A	A1TS	POPTR_0008s15720	POPTR_0008s15720 (10)	scaffold_8:10482871-10483360(+) (10)	NA	Q8H185	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4"	AT5G43850.1	RmlC-like cupins superfamily protein 	LOC_Os03g06620.1	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed"	NA	NA	GO:0071267|L-methionine salvage||GO:0071265|L-methionine biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0019509|L-methionine salvage from methylthioadenosine||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction||GO:0009086|methionine biosynthetic process	GO:0046872|metal ion binding||GO:0051213|dioxygenase activity	NA
PtpAffx.122118.1.S1_s_at	A	A1TS	POPTR_0015s04140	POPTR_0015s04140 (11)	scaffold_15:4163389-4164320(+) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122160.1.A1_s_at	A	A1TS	POPTR_0010s18200	POPTR_0010s18200 (11)	scaffold_10:16539289-16539716(-) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT1G79380.1	Ca(2)-dependent phospholipid-binding protein (Copine) family 	LOC_Os08g04130.1	"copine-6, putative, expressed"	Medtr6g093150.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12217.1.A1_at	A	A1TS	POPTR_0012s00750	POPTR_0012s00750 (10)	scaffold_12:421926-422399(-) (10)	NA	O81641	IAA-amino acid hydrolase ILR1-like 3	AT5G54140.1	IAA-leucine-resistant (ILR1)-like 3 	LOC_Os04g44110.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.12219.1.S1_s_at	A	A1TS	POPTR_0014s15830	POPTR_0014s15830 (11)	scaffold_14:11908853-11910419(-) (11)	NA	Q9SJB4	GDSL esterase/lipase At2g04570	AT2G04570.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g04710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g092140.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.12220.1.A1_at	A	A2TS	POPTR_0005s07500	POPTR_0005s07500 (11)//POPTR_1582s00200 (10)	scaffold_1582:61-512(+) (11)//scaffold_5:5118713-5119164(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr3g111140.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122209.1.S1_at	A	A1TS	POPTR_0009s14020	POPTR_0009s14020 (11)	scaffold_9:11066596-11067148(-) (11)	NA	Q2KI83	DnaJ homolog subfamily C member 17	AT5G23590.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os03g04400.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding||GO:0003676|nucleic acid binding	NA
PtpAffx.122211.1.S1_s_at	A	A2TS	POPTR_0001s32280	POPTR_0001s32280 (11)//POPTR_0017s08270 (11)	scaffold_1:30676807-30677492(+) (11)//scaffold_17:6745681-6746856(+) (11)	NA	Q8W4N3	Ubiquitin carboxyl-terminal hydrolase 2	AT1G04860.1	ubiquitin-specific protease 2 	LOC_Os09g32740.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr3g105630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.12225.1.S1_at	A	A1TS	POPTR_0007s06620	POPTR_0007s06620 (11)	scaffold_7:5032614-5033048(+) (11)	NA	Q9LV93	ABC transporter F family member 5	AT5G64840.1	general control non-repressible 5 	LOC_Os11g39020.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g144690.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.12226.1.S1_at	A	A1TS	POPTR_0010s24630	POPTR_0010s24630 (11)	scaffold_10:20738690-20739168(-) (11)	NA	Q9M376	Vesicle-associated membrane protein 727	AT3G54300.2	vesicle-associated membrane protein 727 	LOC_Os08g44430.2	"vesicle-associated membrane protein 727, putative, expressed"	AC233577_38.1	Synaptobrevin AC233577.5 178836-175201 E EGN_Mt090430 200	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.12226.2.S1_at	A	A1TS	POPTR_0008s02030	POPTR_0008s02030 (9)	scaffold_8:980303-981213(+) (9)	NA	Q9M376	Vesicle-associated membrane protein 727	AT3G54300.2	vesicle-associated membrane protein 727 	LOC_Os08g44430.2	"vesicle-associated membrane protein 727, putative, expressed"	AC233577_38.1	Synaptobrevin AC233577.5 178836-175201 E EGN_Mt090430 200	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.12232.1.A1_a_at	A	A1TS	POPTR_0010s16080	POPTR_0010s16080 (11)	scaffold_10:15130107-15131103(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12232.4.S1_at	A	A1MS	POPTR_0010s16070	POPTR_0010s16070 (9)	scaffold_10:15124348-15124553(+) (9)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122348.1.S1_at	A	A1TS	POPTR_0002s15020	POPTR_0002s15020 (9)	scaffold_2:11118746-11119211(+) (9)	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g107020.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.122358.1.S1_s_at	A	A1TS	POPTR_0001s08620	POPTR_0001s08620 (11)	scaffold_1:6568395-6568999(-) (11)	NA	Q9S746	Protein HOTHEAD	AT1G12570.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os04g48400.1	"HOTHEAD precursor, putative, expressed"	Medtr5g011140.1	GMC oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.12239.1.A1_at	A	A1TS	POPTR_0001s07980	POPTR_0001s07980 (11)	scaffold_1:6035418-6035894(-) (11)	NA	NA	NA	AT4G22740.2	glycine-rich protein 	LOC_Os08g02460.1	expressed protein	Medtr8g106900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122394.1.S1_at	A	A1TS	POPTR_0001s21430	POPTR_0001s21430 (11)	scaffold_1:19891260-19891313(-) (11)	POPTR_0003s01730 (8)	A5JTQ3	Beta-xylosidase/alpha-L-arabinofuranosidase 2	AT5G64570.1	beta-D-xylosidase 4 	LOC_Os04g54810.1	"beta-D-xylosidase, putative, expressed"	Medtr2g008400.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.122394.1.S1_s_at	A	A1TS	POPTR_0001s21430	POPTR_0001s21430 (11)	scaffold_1:19890664-19891274(-) (11)	NA	A5JTQ3	Beta-xylosidase/alpha-L-arabinofuranosidase 2	AT5G64570.1	beta-D-xylosidase 4 	LOC_Os04g54810.1	"beta-D-xylosidase, putative, expressed"	Medtr2g008400.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.1224.2.S1_a_at	A	A1TS	POPTR_0013s03320	POPTR_0013s03320 (11)	scaffold_13:2029955-2030651(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122405.1.S1_s_at	A	A1TS	POPTR_0008s16710	POPTR_0008s16710 (11)	scaffold_8:11226708-11230038(+) (11)	NA	P0A9T5	Protein tas	AT1G04420.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os03g41510.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr1g043110.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.12241.1.A1_s_at	A	A2TS	POPTR_0012s00930	POPTR_0012s00950 (11)//POPTR_0012s00930 (11)	scaffold_12:598015-599129(-) (11)//scaffold_12:621208-622332(-) (11)	NA	NA	NA	AT3G19180.2	paralog of ARC6 	LOC_Os04g57920.1	"OsFBX154 - F-box domain containing protein, expressed"	Medtr6g089760.1	"ARC6H, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122427.1.S1_at	A	A1TS	POPTR_0279s00200	POPTR_0279s00200 (11)	scaffold_279:15108-15280(-) (11)	NA	Q15GI4	Eugenol synthase 1	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009310.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.12243.1.A1_s_at	A	A1TS	POPTR_0010s18010	POPTR_0010s18010 (11)	scaffold_10:16409818-16410141(+) (11)	NA	NA	NA	AT1G79510.2	Uncharacterized conserved protein (DUF2358) 	LOC_Os04g52330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12244.1.A1_at	A	A1TS	POPTR_0008s11610	POPTR_0008s11610 (11)	scaffold_8:7408523-7409007(+) (11)	NA	Q9FV52	"Methionine aminopeptidase 1B, chloroplastic"	AT1G13270.1	methionine aminopeptidase 1B 	LOC_Os04g52100.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g069010.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.122475.1.A1_at	A	A1TS	POPTR_0002s01190	POPTR_0002s01190 (11)	scaffold_2:629855-631161(+) (11)	NA	Q2KIG3	Carboxypeptidase B2	AT5G42320.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os02g02710.1	"zinc carboxypeptidase family protein, putative, expressed"	NA	NA	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004181|metallocarboxypeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.12249.1.S1_at	A	A1TS	POPTR_0015s12830	POPTR_0015s12830 (11)	scaffold_15:13038651-13039095(-) (11)	NA	Q5N2J3	Sec-independent protein translocase protein tatA/E homolog	AT5G52440.1	Bacterial sec-independent translocation protein mttA/Hcf106 	LOC_Os11g37130.1	"mttA/Hcf106 family protein, putative, expressed"	Medtr1g126690.1	Twin-arginine translocation protein TatA/E 	GO:0015031|protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.122496.1.S1_at	A	A1TS	POPTR_0019s13420	POPTR_0019s13420 (11)	scaffold_19:14344793-14345313(+) (11)	NA	Q8GY60	Probable protein phosphatase 2C 52	AT4G03415.2	Protein phosphatase 2C family protein 	LOC_Os07g37890.1	"protein phosphatase 2C, putative, expressed"	Medtr4g045040.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1225.1.S1_at	A	A1TS	POPTR_0010s05100	POPTR_0010s05100 (10)	scaffold_10:6503680-6504129(-) (10)	NA	NA	NA	AT1G23710.1	Protein of unknown function (DUF1645) 	NA	NA	Medtr5g035550.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122510.1.S1_at	A	A1TS	POPTR_0001s04230	POPTR_0001s04230 (10)	scaffold_1:3345567-3346890(+) (10)	NA	Q6NLS8	"Peptidyl-tRNA hydrolase, mitochondrial"	AT5G19830.1	Peptidyl-tRNA hydrolase family protein 	LOC_Os03g22610.2	"peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed"	Medtr4g134300.1	Peptidyl-tRNA hydrolase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004045|aminoacyl-tRNA hydrolase activity	NA
PtpAffx.122511.1.S1_at	A	A1TS	POPTR_0018s06380	POPTR_0018s06380 (11)	scaffold_18:6207808-6209788(-) (11)	NA	NA	NA	AT2G26900.1	Sodium Bile acid symporter family 	LOC_Os01g45750.1	"bile acid sodium symporter family protein, putative, expressed"	Medtr8g118790.2	Bile acid:sodium symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122514.1.S1_s_at	A	A1TS	POPTR_0017s12290	POPTR_0017s12290 (11)	scaffold_17:12512571-12512915(-) (11)	NA	Q9FKA5	Uncharacterized protein At5g39570	AT5G39570.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g12580.1	"pro-resilin precursor, putative, expressed"	Medtr6g013300.1	"Stress protein DDR48, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12253.1.A1_at	A	A1TS	POPTR_0005s10500	POPTR_0005s10500 (11)	scaffold_5:7550894-7551220(+) (11)	NA	NA	NA	AT4G35510.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17540.3); Has 182 Blast hits to 179 proteins in 73 species: Archae - 0; Bacteria - 87; Metazoa - 17; Fungi - 9; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12253.2.S1_at	A	A1TS	POPTR_0012s06400	POPTR_0012s06400 (10)	scaffold_12:6768228-6768617(+) (10)	NA	NA	NA	AT4G35510.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17540.3); Has 182 Blast hits to 179 proteins in 73 species: Archae - 0; Bacteria - 87; Metazoa - 17; Fungi - 9; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). 	LOC_Os06g51240.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122535.1.S1_at	A	A1TS	POPTR_0001s17500	POPTR_0001s17500 (11)	scaffold_1:14289917-14290984(+) (11)	NA	Q99685	Monoglyceride lipase	AT1G52760.1	lysophospholipase 2 	LOC_Os02g11720.1	"lipase, putative, expressed"	Medtr8g129890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122552.1.S1_at	A	A1TS	POPTR_0004s07400	POPTR_0004s07400 (11)	scaffold_4:6103607-6103950(+) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT5G37310.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.122552.2.S1_at	A	A1TS	POPTR_0017s01490	POPTR_0017s01490 (11)	scaffold_17:1031068-1031283(+) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT2G01970.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.122552.2.S1_s_at	A	A1TS	POPTR_0017s01490	POPTR_0017s01490 (11)	scaffold_17:1030894-1031213(+) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT2G01970.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.122552.5.S1_at	A	A1TS	POPTR_0004s07390	POPTR_0004s07390 (11)	scaffold_4:6096402-6096737(+) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT5G37310.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.122552.6.S1_at	A	A1TS	POPTR_0017s01480	POPTR_0017s01480 (9)	scaffold_17:1021269-1021340(+) (9)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT5G37310.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.122552.7.S1_s_at	A	A1TS	POPTR_0019s09350	POPTR_0019s09350 (11)	scaffold_19:10923499-10923683(+) (11)	NA	NA	NA	AT2G40815.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	NA	NA	Medtr5g077910.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122568.1.S1_s_at	A	A1TS	POPTR_0009s06290	POPTR_0009s06290 (11)	scaffold_9:6085458-6086824(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.122575.1.S1_at	A	A1TS	POPTR_0015s13600	POPTR_0015s13600 (10)	scaffold_15:13478721-13479859(+) (10)	NA	O88828	"DNA-directed RNA polymerases I, II, and III subunit RPABC2"	AT5G51940.1	RNA polymerase Rpb6 	LOC_Os03g38960.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr7g111100.1	60 kDa inner membrane insertion protein 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006351|""transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.122577.1.S1_at	A	A1TS	POPTR_0004s16460	POPTR_0004s16460 (9)	scaffold_4:16919300-16919521(+) (9)	NA	NA	NA	AT4G34560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g096180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122583.1.S1_at	A	A1TS	POPTR_0003s14550	POPTR_0003s14550 (11)	scaffold_3:14605946-14606679(-) (11)	NA	Q6N075	Major facilitator superfamily domain-containing protein 5	AT1G64650.1	Major facilitator superfamily protein 	LOC_Os03g02380.1	"major facilitator superfamily domain-containing protein 5, putative, expressed"	Medtr3g123410.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122584.1.S1_at	A	A1TS	POPTR_0007s08410	POPTR_0007s08410 (11)	scaffold_7:7227629-7228873(+) (11)	NA	P25586	Ribosomal RNA assembly protein KRR1	AT5G08420.1	RNA-binding KH domain-containing protein 	LOC_Os10g31520.1	"ribosomal RNA assembly protein mis3, putative, expressed"	Medtr5g094630.2	"KH, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12263.1.A1_s_at	A	A1TS	POPTR_0001s26580	POPTR_0001s26580 (11)	scaffold_1:25561742-25562279(-) (11)	NA	Q41364	"2-oxoglutarate/malate translocator, chloroplastic"	AT5G12860.1	dicarboxylate transporter 1 	LOC_Os12g33080.1	"2-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed"	Medtr2g009260.1	Sodium/sulphate symporter 	GO:0006814|sodium ion transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.12263.2.S1_at	A	A1TS	POPTR_0009s05840	POPTR_0009s05840 (11)	scaffold_9:5822107-5822604(-) (11)	NA	Q41364	"2-oxoglutarate/malate translocator, chloroplastic"	AT5G12860.1	dicarboxylate transporter 1 	LOC_Os12g33080.1	"2-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed"	Medtr2g009260.1	Sodium/sulphate symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122658.1.S1_at	A	A1TS	POPTR_0005s26370	POPTR_0005s26370 (11)	scaffold_5:24424742-24425254(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g039730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122672.1.S1_s_at	A	A1TS	POPTR_0005s21360	POPTR_0005s21360 (11)	scaffold_5:20462465-20463321(+) (11)	NA	P46276	"Fructose-1,6-bisphosphatase, cytosolic"	AT1G43670.1	Inositol monophosphatase family protein 	LOC_Os01g64660.2	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.12269.1.A1_at	A	A3TS	POPTR_0014s15110	POPTR_0014s15110 (11)//POPTR_0014s15080 (9)//POPTR_0014s15050 (9)	scaffold_14:11148466-11149208(-) (9)//scaffold_14:11173125-11173865(-) (9)//scaffold_14:11220662-11222010(-) (11)	NA	Q8H1Z0	Protein WAX2	AT1G02205.2	Fatty acid hydroxylase superfamily 	LOC_Os10g33250.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.122722.1.S1_at	A	A1TS	POPTR_0004s06430	POPTR_0004s06430 (11)	scaffold_4:5171976-5172574(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122745.1.S1_s_at	A	A1TS	POPTR_0016s02320	POPTR_0016s02320 (11)	scaffold_16:1130040-1130394(-) (11)	NA	NA	NA	AT5G60580.3	RING/U-box superfamily protein 	LOC_Os06g46366.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr4g081620.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122746.1.S1_s_at	A	A1TS	POPTR_0017s10720	POPTR_0017s10720 (11)	scaffold_17:10226335-10226955(-) (11)	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12275.1.A1_a_at	A	A1TS	POPTR_0010s03120	POPTR_0010s03120 (11)	scaffold_10:3765869-3766114(-) (11)	NA	Q12296	Protein MAM3	AT4G14240.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os05g32850.1	"CBS domain containing protein, expressed"	Medtr7g010120.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12275.1.A1_at	A	A1TS	POPTR_0010s03120	POPTR_0010s03120 (11)	scaffold_10:3765722-3766621(-) (11)	NA	Q12296	Protein MAM3	AT4G14240.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os05g32850.1	"CBS domain containing protein, expressed"	Medtr7g010120.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122754.1.S1_at	A	A1TS	POPTR_0004s10380	POPTR_0004s10380 (11)	scaffold_4:8914500-8917729(-) (11)	POPTR_0017s14030 (6)	Q9HGL3	Protein sum2	AT1G26110.2	decapping 5 	LOC_Os06g30060.2	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122766.1.S1_at	A	A1MS	POPTR_0013s04620	POPTR_0013s04620 (9)	scaffold_13:3179901-3181220(+) (9)	NA	P72991	ATP-dependent zinc metalloprotease FtsH 3	AT3G04340.1	FtsH extracellular protease family 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr1g094060.1	Peptidase M41; Caspase Recruitment; AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.122769.1.S1_at	A	A1TS	POPTR_0017s08010	POPTR_0017s08010 (11)	scaffold_17:6421850-6421896(+) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr4g120610.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.122769.1.S1_s_at	A	A1TS	POPTR_0017s08010	POPTR_0017s08010 (11)	scaffold_17:6421920-6422489(+) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr4g120610.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.122778.1.S1_s_at	A	A1TS	POPTR_0003s15770	POPTR_0003s15770 (11)	scaffold_3:15480301-15480750(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122780.1.S1_at	A	A1TS	POPTR_0004s12240	POPTR_0004s12240 (10)	scaffold_4:11305190-11305649(+) (10)	NA	P53536	"Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic"	AT3G29320.1	"Glycosyl transferase, family 35 "	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr6g014750.1	"Glycosyl transferase, family 35 "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
PtpAffx.12284.1.A1_s_at	A	A1TS	POPTR_0008s05160	POPTR_0008s05160 (11)	scaffold_8:2996169-2996903(-) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.12284.2.S1_a_at	A	A1TS	POPTR_0001s17720	POPTR_0001s17720 (11)	scaffold_1:14567168-14567208(-) (11)	NA	O67781	Aspartate aminotransferase	AT1G80360.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g08270.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g140320.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.12284.2.S1_at	A	A1TS	POPTR_0001s17720	POPTR_0001s17720 (11)	scaffold_1:14567130-14567326(-) (11)	NA	O67781	Aspartate aminotransferase	AT1G80360.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g08270.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g140320.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.122841.1.S1_s_at	A	A1TS	POPTR_0006s00580	POPTR_0006s00580 (11)	scaffold_6:305122-306377(-) (11)	NA	NA	NA	AT5G47740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os06g18820.1	"serine threonine kinase, putative, expressed"	AC233669_2.1	hypothetical protein AC233669.2 8999-10267 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122847.1.S1_at	A	A1TS	POPTR_0011s15810	POPTR_0011s15810 (10)	scaffold_11:17873555-17875990(+) (10)	NA	NA	NA	AT4G20380.7	LSD1 zinc finger family protein 	LOC_Os03g43840.1	"LSD1 zinc finger domain containing protein, expressed"	Medtr4g137880.1	"Zinc finger, LSD1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122853.1.S1_at	A	A1TS	POPTR_0009s02560	POPTR_0009s02560 (11)	scaffold_9:3344277-3344921(-) (11)	NA	Q94EJ2	Histone deacetylase 8	AT1G08460.1	histone deacetylase 8 	LOC_Os05g36920.1	"histone deacetylase, putative, expressed"	Medtr2g105140.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12287.1.S1_s_at	A	A2TS	POPTR_0013s11100	POPTR_0013s11100 (11)//POPTR_0013s11110 (11)	scaffold_13:11785451-11785893(-) (11)//scaffold_13:11798162-11798604(-) (11)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65100.1	"peptide transporter, putative, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.122897.1.A1_at	A	A1TS	POPTR_0006s24600	POPTR_0006s24600 (11)	scaffold_6:23203452-23203965(+) (11)	NA	Q9H0R3	Transmembrane protein 222	AT2G26070.1	Protein of unknown function (DUF778) 	LOC_Os01g51430.1	"green ripe-like, putative, expressed"	Medtr1g020540.1	Protein of unknown function DUF778 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1229.1.S1_s_at	A	A1TS	POPTR_0014s09410	POPTR_0014s09410 (11)	scaffold_14:7004739-7005690(+) (11)	NA	O15818	Protein KIAA0664 homolog	AT1G01320.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g23990.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	AC235758_23.1	Tetratricopeptide-like helical; AC235758.1 151415-160426 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12291.1.A1_s_at	A	A1TS	POPTR_0009s07610	POPTR_0009s07610 (11)	scaffold_9:7082473-7082556(+) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G19420.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os05g31920.2	"FYVE zinc finger domain containing protein, expressed"	Medtr5g096940.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122932.1.S1_at	A	A1TS	POPTR_0014s02120	POPTR_0014s02120 (11)	scaffold_14:1841413-1841920(+) (11)	NA	Q3ECW2	Cyclin-A3-4	AT1G47230.1	CYCLIN A3;4 	LOC_Os03g41100.1	"cyclin, putative, expressed"	Medtr1g023700.1	Cyclin-like; ; 	NA	NA	GO:0005634|nucleus
PtpAffx.122937.1.A1_s_at	A	A1TS	POPTR_0014s17230	POPTR_0014s17230 (11)	scaffold_14:13366909-13367364(-) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.122940.1.S1_at	A	A1TS	POPTR_0012s04670	POPTR_0012s04670 (11)	scaffold_12:4019902-4020077(+) (11)	NA	Q9LV33	Beta-glucosidase 44	AT3G18080.1	B-S glucosidase 44 	LOC_Os01g32364.1	"Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.122940.1.S1_s_at	A	A1TS	POPTR_0012s04670	POPTR_0012s04670 (11)	scaffold_12:4020430-4020505(+) (11)	NA	Q9LV33	Beta-glucosidase 44	AT3G18080.1	B-S glucosidase 44 	LOC_Os01g32364.1	"Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.122949.1.S1_at	A	A1TS	POPTR_0005s03710	POPTR_0005s03710 (11)	scaffold_5:2482904-2483388(-) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT1G54860.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122960.1.A1_at	A	A1TS	POPTR_0009s04660	POPTR_0009s04660 (9)	scaffold_9:4946886-4947356(-) (9)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT5G58940.1	calmodulin-binding receptor-like cytoplasmic kinase 1 	LOC_Os01g63280.2	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g078150.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.122962.1.A1_at	A	A1TS	POPTR_0018s00690	POPTR_0018s00690 (9)	scaffold_18:599032-599389(+) (9)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122975.1.A1_at	A	A1TS	POPTR_0004s05040	POPTR_0004s05040 (10)	scaffold_4:3795251-3796436(+) (10)	NA	NA	NA	AT1G28530.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g01970.1	expressed protein	Medtr2g018350.1	"F3M18.3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122982.1.A1_at	A	A1TS	POPTR_0012s11340	POPTR_0012s11340 (11)	scaffold_12:11814356-11814602(-) (11)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G51060.1	NADPH/respiratory burst oxidase protein D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.122982.1.A1_s_at	A	A2TS	POPTR_0015s12130	POPTR_0015s12130 (11)//POPTR_0012s11340 (10)	scaffold_12:11814628-11815253(-) (10)//scaffold_15:12523780-12524552(-) (11)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G51060.1	NADPH/respiratory burst oxidase protein D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.122999.2.S1_a_at	A	A1TS	POPTR_0018s08850	POPTR_0018s08850 (11)	scaffold_18:9776335-9776477(+) (11)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122999.3.S1_a_at	A	A1TS	POPTR_0018s08850	POPTR_0018s08850 (11)	scaffold_18:9777910-9778607(+) (11)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122999.3.S1_at	A	A1TS	POPTR_0018s08850	POPTR_0018s08850 (11)	scaffold_18:9777923-9778796(+) (11)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123000.1.S1_at	A	A1TS	POPTR_0002s09190	POPTR_0002s09190 (9)	scaffold_2:6508648-6509135(-) (9)	NA	Q80Y20	Alkylated DNA repair protein alkB homolog 8	AT1G36310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51490.1	"methyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.123000.2.S1_a_at	A	A1TS	POPTR_0002s09190	POPTR_0002s09190 (11)	scaffold_2:6509818-6509854(-) (11)//scaffold_2:6510010-6510046(-) (11)	NA	Q80Y20	Alkylated DNA repair protein alkB homolog 8	AT1G36310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51490.1	"methyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.123000.2.S1_at	A	A1TS	POPTR_0002s09190	POPTR_0002s09190 (10)	scaffold_2:6509842-6510314(-) (10)	NA	Q80Y20	Alkylated DNA repair protein alkB homolog 8	AT1G36310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51490.1	"methyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.12303.1.S1_at	A	A1TS	POPTR_0004s22160	POPTR_0004s22160 (11)	scaffold_4:21101118-21101768(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT2G28315.1	Nucleotide/sugar transporter family protein 	LOC_Os02g41780.1	"transporter-related, putative, expressed"	Medtr2g110080.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12304.1.A1_at	A	A1TS	POPTR_0016s00210	POPTR_0016s00210 (11)	scaffold_16:17989-18836(+) (11)	NA	Q8RWU6	Sodium/hydrogen exchanger 6	AT1G79610.1	Na+/H+ antiporter 6 	LOC_Os09g11450.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr2g033740.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.12306.1.S1_a_at	A	A1TS	POPTR_0007s02080	POPTR_0007s02080 (11)	scaffold_7:1224020-1224110(+) (11)	NA	Q8L9G7	Gamma-secretase subunit APH1-like	AT2G31440.1	"INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). "	LOC_Os02g17280.1	"gamma-secretase subunit APH-1B, putative, expressed"	NA	NA	GO:0043085|positive regulation of catalytic activity||GO:0016485|protein processing	GO:0005515|protein binding	GO:0016021|integral to membrane
PtpAffx.12306.2.S1_a_at	A	A1TS	POPTR_0007s02080	POPTR_0007s02080 (11)	scaffold_7:1221101-1222455(+) (11)	NA	Q8L9G7	Gamma-secretase subunit APH1-like	AT2G31440.1	"INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). "	LOC_Os02g17280.1	"gamma-secretase subunit APH-1B, putative, expressed"	NA	NA	GO:0043085|positive regulation of catalytic activity||GO:0016485|protein processing	GO:0005515|protein binding	GO:0016021|integral to membrane
PtpAffx.12309.1.A1_a_at	A	A1TS	POPTR_0010s25930	POPTR_0010s25930 (11)	scaffold_10:21361397-21361914(+) (11)	NA	NA	NA	AT1G16840.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g13320.1	expressed protein	Medtr2g042680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12309.2.S1_at	A	A1TS	POPTR_0008s00650	POPTR_0008s00650 (11)	scaffold_8:292253-293600(-) (11)	NA	NA	NA	AT1G16840.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g51770.1	expressed protein	Medtr2g042680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12309.3.S1_at	A	A1TS	POPTR_0010s25930	POPTR_0010s25930 (11)	scaffold_10:21361561-21362045(+) (11)	NA	NA	NA	AT1G16840.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g13320.1	expressed protein	Medtr2g042680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123094.1.A1_at	A	A1TA	POPTR_0001s10740	POPTR_0001s10740 (11)	scaffold_1:8355074-8355469(+) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT2G46500.2	phosphoinositide 4-kinase gamma 4 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr5g009140.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.123109.1.S1_at	A	A1TS	POPTR_0018s11960	POPTR_0018s11960 (10)	scaffold_18:12591339-12591851(-) (10)	NA	Q9FGT7	Two-component response regulator ARR18	AT2G25180.1	response regulator 12 	LOC_Os02g55320.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.123129.1.A1_s_at	A	A1TS	POPTR_0009s13510	POPTR_0009s13510 (11)	scaffold_9:10735168-10736202(+) (11)	NA	P28493	Pathogenesis-related protein 5	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os08g43510.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123132.1.A1_at	A	A1TS	POPTR_0001s23690	POPTR_0001s23690 (11)	scaffold_1:23084405-23084844(-) (11)	NA	NA	NA	AT2G32840.1	proline-rich family protein 	LOC_Os03g13190.1	"transposon protein, putative, unclassified, expressed"	Medtr2g071560.1	"proline-rich family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123144.1.A1_at	A	A1TS	POPTR_0006s09100	POPTR_0006s09100 (11)	scaffold_6:6711030-6712951(-) (11)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT1G06150.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os12g06330.1	"CPuORF6 - conserved peptide uORF-containing transcript, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123147.1.A1_at	A	A1TS	POPTR_0018s11180	POPTR_0018s11180 (11)	scaffold_18:11975754-11976242(+) (11)	NA	NA	NA	AT4G30780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12315.1.A1_at	A	A1TS	POPTR_0013s12810	POPTR_0013s12810 (10)	scaffold_13:13471315-13471734(+) (10)	NA	Q6S4P4	Transcription factor RF2b	AT3G58120.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g55150.1	"bZIP transcription factor domain containing protein, expressed"	AC233675_20.1	Basic leucine zipper AC233675.1 92514-95337 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.123151.1.A1_at	A	A1TS	POPTR_0006s13160	POPTR_0006s13160 (11)	scaffold_6:10380940-10381116(+) (11)	NA	P0CH05	Polyubiquitin	AT5G20620.1	ubiquitin 4 	LOC_Os05g42424.1	"ubiquitin family protein, putative, expressed"	Medtr4g110760.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123174.1.A1_at	A	A1MS	POPTR_0013s03860	POPTR_0013s03860 (11)	scaffold_13:2517171-2517482(-) (11)	NA	P32294	Auxin-induced protein 22B	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os12g40900.1	"OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed"	AC233668_17.1	AUX/IAA protein AC233668.2 65033-67329 F EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.123193.1.S1_s_at	A	A1TS	POPTR_0018s04830	POPTR_0018s04830 (11)	scaffold_18:4205018-4206588(+) (11)	NA	Q9M077	Serine/threonine-protein kinase Aurora-1	AT4G32830.1	ataurora1 	LOC_Os01g09580.2	"CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g128170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1232.1.A1_at	A	A1TS	POPTR_0005s20540	POPTR_0005s20540 (11)	scaffold_5:19598416-19598859(+) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT1G77280.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os12g07990.1	"protein kinase family protein, putative"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.123201.1.S1_s_at	A	A1TS	POPTR_0001s45010	POPTR_0001s45010 (11)	scaffold_1:45326224-45327243(-) (11)	NA	Q9FFT9	DEAD-box ATP-dependent RNA helicase 32	AT5G54910.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os07g33340.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g099850.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.123212.1.S1_at	A	A1TS	POPTR_0002s18030	POPTR_0002s18030 (9)	scaffold_2:13914412-13914758(-) (9)	NA	Q8L838	Conserved oligomeric Golgi complex subunit 4	AT4G01400.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167); Has 465 Blast hits to 425 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 153; Fungi - 166; Plants - 45; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). 	LOC_Os02g25840.1	"conserved oligomeric Golgi complex component 4, related, putative, expressed"	Medtr7g146090.1	COG4 transport 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123216.1.S1_at	A	A1TS	POPTR_0007s12550	POPTR_0007s12550 (11)	scaffold_7:12847228-12848095(+) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT4G36690.4	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.12324.2.S1_at	A	A1TS	POPTR_0007s05410	POPTR_0007s05410 (11)	scaffold_7:3494480-3495308(-) (11)	NA	Q8GSA7	Calmodulin-binding transcription activator 3	AT2G22300.2	signal responsive 1 	LOC_Os03g09100.1	"calmodulin-binding transcription activator, putative, expressed"	Medtr2g008890.1	IQ calmodulin-binding region; CG-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123245.1.S1_at	A	A1TS	POPTR_0014s02590	POPTR_0014s02590 (11)	scaffold_14:2160041-2160300(+) (11)	NA	Q9FUA4	Transcription factor SPATULA	AT4G36930.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os06g06900.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g024210.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.123247.1.S1_at	A	A1TS	POPTR_0019s05980	POPTR_0019s05980 (11)	scaffold_19:6418738-6419604(+) (11)	NA	NA	NA	AT1G09815.1	polymerase delta 4 	LOC_Os09g34850.3	"POLD4A - Putative DNA polymerase delta complex subunit, expressed"	AC235662_16.1	"DNA polymerase delta, subunit 4 AC235662.1 72274-71456 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	NA	GO:0005634|nucleus
PtpAffx.123262.1.S1_s_at	A	A1TS	POPTR_0014s02200	POPTR_0014s02200 (11)	scaffold_14:1879211-1879380(+) (11)	NA	Q9M7N6	MFP1 attachment factor 1	AT1G47200.1	WPP domain protein 2 	LOC_Os03g11060.1	"MFP1 attachment factor 1, putative, expressed"	Medtr1g023740.1	"MFP1 attachment factor 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123280.1.S1_s_at	A	A1TS	POPTR_0001s24370	POPTR_0001s24370 (11)	scaffold_1:23669471-23670093(-) (11)	NA	NA	NA	AT2G39570.1	ACT domain-containing protein 	LOC_Os05g02220.3	"ACT domain containing protein, expressed"	Medtr2g114630.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.123284.1.S1_at	A	A1MS	POPTR_0005s15440	POPTR_0005s15440 (9)	scaffold_5:12114054-12115940(+) (9)	NA	NA	NA	AT5G16160.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g49490.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12329.1.A1_at	A	A1TS	POPTR_0005s07760	POPTR_0005s07760 (10)	scaffold_5:5311438-5311983(-) (10)	NA	NA	NA	AT5G65030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g101660.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12330.1.A1_at	A	A1MS	POPTR_0014s08060	POPTR_0014s08060 (10)	scaffold_14:5999394-5999876(+) (10)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g40100.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.123326.1.S1_at	A	A1TS	POPTR_0005s19650	POPTR_0005s19650 (11)	scaffold_5:18564037-18564586(-) (11)	NA	NA	NA	AT1G09700.1	dsRNA-binding domain-like superfamily protein 	LOC_Os11g01869.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g149610.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.123349.1.S1_s_at	A	A2TS	POPTR_0013s07650	POPTR_0019s07200 (11)//POPTR_0013s07650 (11)	scaffold_13:6488693-6488884(+) (11)//scaffold_19:8053957-8054148(-) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT5G16730.1	Plant protein of unknown function (DUF827) 	LOC_Os05g02820.1	"protein transport protein-related, putative, expressed"	Medtr4g107430.1	"protein transport protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123365.1.S1_s_at	A	A1TS	POPTR_0021s00290	POPTR_0021s00290 (11)	scaffold_21:85684-86436(+) (11)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
PtpAffx.123366.1.S1_at	A	A1TS	POPTR_0008s11040	POPTR_0008s11040 (9)	scaffold_8:6959803-6960330(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123370.1.S1_s_at	A	A1TS	POPTR_0008s04680	POPTR_0008s04680 (11)	scaffold_8:2681813-2682674(+) (11)	NA	Q86X76	Nitrilase homolog 1	AT4G08790.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein 	LOC_Os12g31830.1	"nitrilase, putative, expressed"	Medtr1g146400.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.12338.1.S1_at	A	A1TS	POPTR_0003s20390	POPTR_0003s20390 (11)	scaffold_3:18894721-18895784(+) (11)	NA	Q9C5J8	"Outer envelope protein of 80 kDa, chloroplastic"	AT5G19620.1	outer envelope protein of 80 kDa 	LOC_Os02g10260.1	"outer membrane protein, OMP85 family protein, expressed"	Medtr2g117630.1	Bacterial surface antigen (D15) 	NA	NA	GO:0019867|outer membrane
PtpAffx.123395.1.S1_at	A	A1TS	POPTR_0019s01610	POPTR_0019s01610 (9)	scaffold_19:1429664-1430084(+) (10)	NA	NA	NA	AT5G53590.1	SAUR-like auxin-responsive protein family  	LOC_Os02g52990.1	"OsSAUR12 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g144190.1	"auxin-induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123412.1.S1_s_at	A	A1TS	POPTR_0004s00210	POPTR_0004s00210 (11)	scaffold_4:16040-16381(-) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT5G16370.1	acyl activating enzyme 5 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084090.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.12342.1.A1_at	A	A1TS	POPTR_0006s04180	POPTR_0006s04180 (11)	scaffold_6:2834318-2834964(-) (11)	NA	NA	NA	AT5G04080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12342.1.A1_x_at	A	A1TS	POPTR_0006s04180	POPTR_0006s04180 (11)	scaffold_6:2834318-2835131(-) (11)	NA	NA	NA	AT5G04080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12342.2.S1_s_at	A	A1TS	POPTR_0003s12870	POPTR_0003s12870 (11)	scaffold_3:13320018-13320076(+) (11)	NA	Q7XSQ9	Probable aquaporin PIP1-2	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.12342.4.A1_at	A	A1MS	POPTR_0006s04180	POPTR_0006s04180 (11)	scaffold_6:2834784-2835122(-) (11)	NA	NA	NA	AT5G04080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123425.1.A1_at	A	A1TS	POPTR_0012s10740	POPTR_0012s10740 (10)	scaffold_12:11437817-11438227(-) (10)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g61740.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr6g025640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.12345.1.S1_at	A	A1TS	POPTR_0019s08020	POPTR_0019s08020 (10)	scaffold_19:9345037-9345523(-) (10)	NA	NA	NA	AT1G65295.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01015.1); Has 90 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g27540.2	"CRP7 - Cysteine-rich family protein precursor, expressed"	Medtr7g089520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123468.1.S1_at	A	A1TS	POPTR_0008s06210	POPTR_0008s06210 (11)	scaffold_8:3659716-3659751(-) (11)	NA	NA	NA	AT5G05960.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g33920.1	"LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12348.1.S1_at	A	A1TS	POPTR_0007s05690	POPTR_0007s05690 (11)	scaffold_7:3822498-3823048(-) (11)	NA	Q8H1E4	Ethylene-responsive transcription factor RAP2-4	AT1G78080.1	related to AP2 4 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	CU651566_18.1	Pathogenesis-related transcriptional factor and ERF CU651566.9 95071-96871 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.1235.1.A1_at	A	A2TS	POPTR_0004s18780	POPTR_0004s18780 (11)//POPTR_0014s18075 (9)	scaffold_14:14636372-14636725(-) (11)//scaffold_14:14695688-14696016(-) (10)//scaffold_4:18524210-18530424(-) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47420.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g023220.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123510.1.S1_at	A	A1TS	POPTR_0014s02930	POPTR_0014s02930 (11)	scaffold_14:2418540-2418578(+) (11)	NA	P97852	Peroxisomal multifunctional enzyme type 2	AT5G42890.1	sterol carrier protein 2 	LOC_Os02g52720.1	"peroxisomal multifunctional enzyme type 2, putative"	Medtr1g024360.1	Short-chain dehydrogenase/reductase SDR; Sterol-binding 	NA	NA	NA
PtpAffx.123510.1.S1_s_at	A	A1TS	POPTR_0014s02930	POPTR_0014s02930 (11)	scaffold_11:3461276-3461429(+) (11)//scaffold_14:2418357-2418511(+) (11)	NA	P97852	Peroxisomal multifunctional enzyme type 2	AT5G42890.1	sterol carrier protein 2 	LOC_Os02g52720.1	"peroxisomal multifunctional enzyme type 2, putative"	Medtr1g024360.1	Short-chain dehydrogenase/reductase SDR; Sterol-binding 	NA	NA	NA
PtpAffx.12353.1.A1_at	A	A1MA	POPTR_0018s14280	POPTR_0018s14280 (11)	scaffold_18:14513314-14513696(+) (11)	NA	Q9CZU3	Superkiller viralicidic activity 2-like 2	AT2G06990.1	"RNA helicase, ATP-dependent, SK12/DOB1 protein "	LOC_Os11g07500.1	"DSHCT domain containing protein, expressed"	Medtr4g161100.1	"ATP-requiring DNA helicase RecQ; DSH, C-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.123534.1.S1_s_at	A	A1TS	POPTR_0011s13460	POPTR_0011s13460 (11)	scaffold_11:16195819-16196260(-) (11)	NA	Q69VG1	Chitin-inducible gibberellin-responsive protein 1	AT1G50600.1	scarecrow-like 5 	LOC_Os07g36170.2	"chitin-inducible gibberellin-responsive protein, putative, expressed"	Medtr2g096350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123565.1.S1_at	A	A1TS	POPTR_0005s16700	POPTR_0005s16700 (9)	scaffold_5:13745926-13747243(-) (9)	NA	Q66KH2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT1G36050.2	Endoplasmic reticulum vesicle transporter protein 	LOC_Os04g38340.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12358.1.S1_at	A	A1TS	POPTR_0002s06200	POPTR_0002s06200 (11)	scaffold_2:4153416-4154426(-) (11)	NA	Q8HXM1	Cleavage stimulation factor subunit 2	AT1G71800.1	cleavage stimulating factor 64 	LOC_Os11g07490.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g158160.1	"proline-rich protein precursor, putative "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.123605.1.S1_at	A	A1TS	POPTR_0004s20530	POPTR_0004s20530 (9)	scaffold_4:20046932-20050020(+) (9)	NA	Q6P8B3	Speckle-type POZ protein	AT3G03740.1	BTB-POZ and MATH domain 4 	LOC_Os03g57854.1	"MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr5g094610.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.123631.1.S1_s_at	A	A1TS	POPTR_0012s07290	POPTR_0012s07290 (11)	scaffold_12:8150628-8151170(-) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT5G62710.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g44090.1	"leucine-rich repeat family protein, putative, expressed"	Medtr8g113060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.12369.1.A1_at	A	A2TS	POPTR_0008s16760	POPTR_0008s16770 (11)//POPTR_0008s16760 (11)	scaffold_8:11289276-11289377(+) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G14350.3	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1237.1.A1_s_at	A	A1TS	POPTR_0001s34380	POPTR_0001s34380 (11)	scaffold_1:32526312-32527139(-) (11)	NA	A5GI62	Ribosome maturation factor rimM	AT5G46420.1	16S rRNA processing protein RimM family 	LOC_Os05g49130.2	"16S rRNA processing protein RimM containing protein, expressed"	Medtr4g136560.1	UTP--glucose-1-phosphate uridylyltransferase; 16S rRNA processing protein RimM 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	NA
PtpAffx.123703.1.S1_at	A	A1TS	POPTR_0006s10110	POPTR_0006s10110 (10)	scaffold_6:7519657-7520248(-) (10)	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g166250.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.12372.1.A1_at	A	A1TS	POPTR_0016s13950	POPTR_0016s13950 (11)	scaffold_16:13171237-13171660(-) (11)	NA	Q8K4Q0	Regulatory-associated protein of mTOR	AT3G08850.1	"HEAT repeat ;WD domain, G-beta repeat protein protein "	LOC_Os12g01922.1	"WD domain and HEAT domain containing protein, putative, expressed"	Medtr7g077750.1	WD40-like; Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123754.2.A1_at	A	A1TS	POPTR_0012s09710	POPTR_0012s09710 (11)	scaffold_12:10666408-10667505(+) (11)	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
PtpAffx.12377.1.A1_at	A	A1TS	POPTR_0003s07240	POPTR_0003s07240 (10)	scaffold_3:8826690-8826950(-) (10)	NA	B3EER1	50S ribosomal protein L7/L12	AT1G70190.2	"Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like "	LOC_Os05g48050.1	"ribosomal protein L7/L12 C-terminal domain containing protein, expressed"	Medtr8g092690.1	"Ribosomal protein L7/12, oligomerisation; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.123796.2.A1_at	A	A1MS	POPTR_0015s11700	POPTR_0015s11700 (9)	scaffold_15:12262262-12262737(+) (11)	NA	Q55467	Magnesium-protoporphyrin O-methyltransferase	AT4G25080.5	magnesium-protoporphyrin IX methyltransferase 	LOC_Os06g04150.1	"magnesium-protoporphyrin O-methyltransferase, putative, expressed"	Medtr4g152280.1	Magnesium protoporphyrin O-methyltransferase 	GO:0015979|photosynthesis||GO:0015995|chlorophyll biosynthetic process	GO:0046406|magnesium protoporphyrin IX methyltransferase activity	NA
PtpAffx.12381.1.S1_at	A	A1TS	POPTR_0013s00250	POPTR_0013s00250 (11)	scaffold_13:41733-42333(+) (11)	NA	Q09758	Putative membrane-bound O-acyltransferase C24H6.01c	AT1G57600.1	MBOAT (membrane bound O-acyl transferase) family protein 	LOC_Os05g05200.1	"O-acyltransferase, putative, expressed"	Medtr1g140740.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123814.1.A1_at	A	A1TS	POPTR_0017s01660	POPTR_0017s01660 (11)	scaffold_17:1184246-1184699(-) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.123838.1.A1_at	A	A1MS	POPTR_0001s15110	POPTR_0001s15110 (10)	scaffold_1:11951148-11951572(+) (10)	NA	Q13395	Probable methyltransferase TARBP1	AT4G17610.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os03g01110.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.12384.1.A1_at	A	A1TS	POPTR_0007s07320	POPTR_0007s07320 (11)	scaffold_7:5662875-5663331(-) (11)	NA	P54697	Myosin-J heavy chain	AT3G19960.1	myosin 1 	LOC_Os10g34710.1	"myosin-2 heavy chain, non muscle, putative, expressed"	Medtr1g046530.1	"IQ calmodulin-binding region; Myosin head, motor region "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.12384.2.S1_a_at	A	A2TS	POPTR_0005s09150	POPTR_0007s07320 (10)//POPTR_0005s09150 (10)	scaffold_5:6396508-6396541(-) (10)//scaffold_7:5663463-5663496(-) (10)	NA	P54697	Myosin-J heavy chain	AT3G19960.1	myosin 1 	LOC_Os10g34710.1	"myosin-2 heavy chain, non muscle, putative, expressed"	Medtr1g046530.1	"IQ calmodulin-binding region; Myosin head, motor region "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.12384.2.S1_at	A	A1TS	POPTR_0005s09150	POPTR_0005s09150 (11)	scaffold_5:6396428-6396712(-) (11)	NA	P54697	Myosin-J heavy chain	AT3G19960.1	myosin 1 	LOC_Os10g34710.1	"myosin-2 heavy chain, non muscle, putative, expressed"	Medtr1g046530.1	"IQ calmodulin-binding region; Myosin head, motor region "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.123845.1.S1_s_at	A	A2TS	POPTR_0010s02610	POPTR_0010s02610 (11)//POPTR_0026s00260 (11)	scaffold_10:3021129-3021243(+) (11)//scaffold_26:335015-335129(+) (11)	NA	Q9LZJ3	Xyloglucan 6-xylosyltransferase	AT3G62720.2	xylosyltransferase 1 	LOC_Os03g18820.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
PtpAffx.12388.1.S1_at	A	A1TS	POPTR_0011s09370	POPTR_0011s09370 (11)	scaffold_11:11609324-11609760(-) (11)	NA	Q42093	ABC transporter C family member 2	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.12388.2.A1_a_at	A	A1TS	POPTR_0011s09370	POPTR_0011s09370 (11)	scaffold_11:11609826-11610451(-) (11)	NA	Q42093	ABC transporter C family member 2	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.12389.1.A1_x_at	A	A1TS	POPTR_0014s15770	POPTR_0014s15770 (11)	scaffold_14:11838484-11838761(+) (11)	NA	Q94AD9	Zinc finger CCCH domain-containing protein 3	AT1G04990.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g092550.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.12395.1.S1_at	A	A1TS	POPTR_0016s02330	POPTR_0016s02330 (10)	scaffold_16:1149358-1149858(+) (10)	NA	Q8CCB4	Vacuolar protein sorting-associated protein 53 homolog	AT1G50500.1	Membrane trafficking VPS53 family protein 	LOC_Os01g67880.1	"vacuolar protein sorting-associated protein 53, putative, expressed"	Medtr2g033780.1	"Vps53-like, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123984.1.S1_at	A	A1TA	POPTR_0016s05670	POPTR_0016s05670 (9)	scaffold_16:3602905-3603397(-) (9)	NA	Q8GWK2	AP2-like ethylene-responsive transcription factor At2g41710	AT2G41710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g32270.1	"AP2 domain containing protein, expressed"	Medtr8g144720.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.123989.1.S1_at	A	A1TS	POPTR_0006s12040	POPTR_0006s12040 (9)	scaffold_6:9209455-9209938(-) (9)	POPTR_0016s10950 (6)	Q9DE27	RuvB-like 2	AT5G67630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g08770.1	"ruvB-like 2, putative, expressed"	Medtr3g080810.1	"AAA ATPase; TIP49, C-terminal "	NA	GO:0003678|DNA helicase activity||GO:0005524|ATP binding	NA
PtpAffx.124024.1.S1_s_at	A	A1TS	POPTR_0012s09990	POPTR_0012s09990 (11)	scaffold_12:10877767-10878217(+) (11)	NA	NA	NA	AT3G48550.1	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g30380.1	expressed protein	Medtr8g108940.1	"ATIDD15/SGR5 ; nucleic acid binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12403.1.S1_at	A	A1TS	POPTR_0002s11410	POPTR_0002s11410 (10)	scaffold_2:8448312-8448805(-) (10)	NA	P46604	Homeobox-leucine zipper protein HAT22	AT4G37790.1	Homeobox-leucine zipper protein family 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g015030.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.124032.1.A1_at	A	A1TS	POPTR_0005s26160	POPTR_0005s26160 (11)	scaffold_5:24237282-24237958(-) (11)	NA	Q8GUG9	U-box domain-containing protein 11	AT3G06880.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g30010.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g112060.1	U box; Armadillo-like helical; 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.124035.1.S1_s_at	A	A1TS	POPTR_0008s09550	POPTR_0008s09550 (11)	scaffold_8:5909621-5909978(+) (11)	POPTR_0010s16590 (7)	Q9LMX4	Probable inactive purple acid phosphatase 1	AT1G13750.1	Purple acid phosphatases superfamily protein 	LOC_Os12g38760.2	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g073720.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.12404.1.A1_at	A	A1MS	POPTR_0008s17000	POPTR_0008s17000 (9)	scaffold_8:11433340-11433540(+) (9)	NA	Q9FNL7	Peptide transporter PTR3-A	AT5G46050.1	peptide transporter 3 	LOC_Os10g33210.1	"peptide transporter PTR3-A, putative, expressed"	Medtr1g090040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.124056.1.S1_a_at	A	A1TS	POPTR_0006s12820	POPTR_0006s12820 (11)	scaffold_6:9982718-9982843(+) (11)	NA	NA	NA	AT2G37025.2	TRF-like 8 	LOC_Os02g53670.1	"MYB family transcription factor, putative, expressed"	Medtr1g076560.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124056.1.S1_at	A	A1TS	POPTR_0006s12820	POPTR_0006s12820 (11)	scaffold_6:9983598-9984973(+) (11)	NA	NA	NA	AT2G37025.2	TRF-like 8 	LOC_Os02g53670.1	"MYB family transcription factor, putative, expressed"	Medtr1g076560.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124056.2.S1_at	A	A1TS	POPTR_0006s12820	POPTR_0006s12820 (9)	scaffold_6:9985319-9985489(+) (9)	NA	NA	NA	AT2G37025.2	TRF-like 8 	LOC_Os02g53670.1	"MYB family transcription factor, putative, expressed"	Medtr1g076560.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12406.1.S1_at	A	A1MS	POPTR_0015s09190	POPTR_0015s09190 (9)	scaffold_15:10467608-10468342(+) (11)	NA	NA	NA	AT5G50150.1	Protein of Unknown Function (DUF239) 	LOC_Os06g28000.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr7g143030.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12409.1.S1_at	A	A1TS	POPTR_0013s08110	POPTR_0013s08110 (11)	scaffold_13:7052785-7053116(-) (11)	NA	O22881	Potassium transporter 2	AT2G40540.2	potassium transporter 2 	LOC_Os03g21890.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.124163.1.S1_at	A	A1TS	POPTR_0018s00930	POPTR_0018s00930 (10)	scaffold_18:854417-854916(-) (10)	NA	NA	NA	AT4G32680.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52343.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g44132.2	expressed protein	Medtr4g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124165.1.S1_at	A	A1TS	POPTR_0007s03540	POPTR_0007s03540 (10)	scaffold_7:2034395-2035725(+) (10)	NA	Q9ZT66	"Endo-1,3;1,4-beta-D-glucanase"	AT3G23600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33100.1	"endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed"	Medtr2g026480.1	Dienelactone hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.124192.1.S1_at	A	A1TS	POPTR_0017s02250	POPTR_0017s02250 (10)	scaffold_17:1669962-1670473(+) (10)	NA	Q9SZ83	Uncharacterized oxidoreductase At4g09670	AT1G66130.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g26400.2	"uncharacterized oxidoreductase, putative, expressed"	Medtr3g087060.1	"Oxidoreductase, N-terminal "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.124199.1.S1_at	A	A1TS	POPTR_0002s22810	POPTR_0002s22810 (11)	scaffold_2:19770977-19773354(-) (11)	NA	Q8L7U5	Serine/threonine-protein phosphatase BSL1	AT4G03080.1	BRI1 suppressor 1 (BSU1)-like 1 	LOC_Os05g05240.1	"serine/threonine protein phosphatase, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.12420.1.A1_at	A	A1TS	POPTR_0005s23260	POPTR_0005s23260 (11)	scaffold_5:22085184-22085523(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g38470.1	expressed protein	Medtr5g006290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12420.1.A1_s_at	A	A1TS	POPTR_0005s23260	POPTR_0005s23260 (11)	scaffold_5:22084970-22085420(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g38470.1	expressed protein	Medtr5g006290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124213.1.S1_at	A	A1TS	POPTR_0006s13790	POPTR_0006s13790 (11)	scaffold_6:11007843-11008123(-) (11)	NA	Q9LSQ3	Transcription factor bHLH82	AT5G58010.1	LJRHL1-like 3 	LOC_Os06g09370.2	"PTF1, putative, expressed"	Medtr8g145720.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.124217.1.S1_s_at	A	A1TS	POPTR_0007s13040	POPTR_0007s13040 (11)	scaffold_7:13221496-13222523(-) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT2G18280.2	tubby like protein 2 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12425.1.S1_at	A	A1TS	POPTR_0014s09620	POPTR_0014s09620 (11)	scaffold_14:7176109-7177796(-) (11)	NA	NA	NA	AT2G46580.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os03g02450.2	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.12425.1.S1_s_at	A	A1TS	POPTR_0014s09620	POPTR_0014s09620 (11)	scaffold_14:7176201-7176541(-) (11)	NA	NA	NA	AT2G46580.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os03g02450.2	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.12425.2.S1_a_at	A	A2TS	POPTR_0002s17450	POPTR_0002s17450 (11)//POPTR_0014s09620 (10)	scaffold_14:7177795-7177833(-) (10)//scaffold_2:13208199-13208237(-) (11)	NA	NA	NA	AT2G46580.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os03g02450.2	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.12425.2.S1_at	A	A1TS	POPTR_0002s17450	POPTR_0002s17450 (11)	scaffold_2:13206655-13206752(-) (11)	NA	NA	NA	AT2G46580.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os03g02450.2	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.124268.1.S1_at	A	A1MS	POPTR_0014s15420	POPTR_0014s15420 (11)	scaffold_14:11483909-11485320(-) (11)	NA	O32107	Uncharacterized membrane protein yuiD	AT3G21610.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os01g67560.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12427.2.S1_s_at	A	A1MS	POPTR_0004s00620	POPTR_0004s00620 (11)	scaffold_4:237237-238308(+) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G22150.1	plant UBX domain-containing protein 3 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124277.1.S1_at	A	A1TS	POPTR_0007s06800	POPTR_0007s06800 (11)	scaffold_7:5160845-5161052(+) (11)	NA	NA	NA	AT4G39470.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124284.1.S1_s_at	A	A1TS	POPTR_0001s18760	POPTR_0001s18760 (11)	scaffold_1:15897983-15898572(+) (11)	NA	Q9C5H4	VHS domain-containing protein At3g16270	AT3G16270.1	ENTH/VHS family protein 	LOC_Os01g13160.1	expressed protein	Medtr8g015210.1	VHS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124286.1.S1_s_at	A	A1TS	POPTR_0002s09200	POPTR_0002s09200 (11)	scaffold_2:6514298-6515309(+) (11)	NA	NA	NA	AT5G02130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g38330.1	"NDP1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124313.1.S1_at	A	A1MS	POPTR_0016s02210	POPTR_0016s02210 (11)	scaffold_16:1063796-1064250(+) (11)	NA	Q5BJZ6	UPF0586 protein C9orf41 homolog	AT2G32170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g43560.1	"AGAP007115-PA, putative, expressed"	AC233673_1.1	hypothetical protein AC233673.1 745-2078 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124319.1.S1_a_at	A	A3TS	POPTR_0018s03930	POPTR_0018s03930 (11)//POPTR_0018s03950 (11)//POPTR_0018s04340 (9)	scaffold_18:3284278-3284435(-) (9)//scaffold_18:3368782-3369250(+) (11)//scaffold_18:3391109-3391591(+) (11)//scaffold_18:3657158-3657314(-) (9)	NA	P73627	Uncharacterized protein sll1770	AT5G24810.1	ABC1 family protein 	LOC_Os06g48770.1	"OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed"	Medtr1g010020.1	"ABC-1; Penicillin-binding protein, transpeptidase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124321.1.S1_s_at	A	A1TS	POPTR_0019s07720	POPTR_0019s07720 (11)	scaffold_19:8851878-8853273(+) (11)	NA	NA	NA	AT5G16810.1	Protein kinase superfamily protein 	LOC_Os02g46750.2	expressed protein	Medtr5g006320.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12435.1.S1_s_at	A	A1TS	POPTR_0001s07020	POPTR_0001s07020 (11)	scaffold_1:5358498-5358988(+) (11)	NA	Q0JNR2	Cysteine proteinase inhibitor 12	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.124350.1.S1_at	A	A1TS	POPTR_0010s25420	POPTR_0010s25420 (10)	scaffold_10:21112709-21113140(-) (10)	NA	O94901	SUN domain-containing protein 1	AT5G04990.1	SAD1/UNC-84 domain protein 1 	LOC_Os01g16220.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr8g047470.1	"Sad1/UNC-like, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124363.1.S1_s_at	A	A1TS	POPTR_0005s27480	POPTR_0005s27480 (11)	scaffold_5:25123431-25123895(+) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os12g17900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.124368.1.S1_at	A	A1TS	POPTR_0012s05680	POPTR_0012s05680 (11)	scaffold_12:5442027-5444644(+) (11)	POPTR_0015s03350 (6)	NA	NA	AT1G18470.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12437.1.A1_at	A	A1TS	POPTR_0006s15080	POPTR_0006s15080 (11)	scaffold_6:12527716-12528156(-) (11)	NA	Q9LTS7	Zinc finger CCCH domain-containing protein 65	AT5G56930.1	CCCH-type zinc finger family protein 	LOC_Os01g39100.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g104100.1	hypothetical protein 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.124389.1.S1_at	A	A1TS	POPTR_0002s07050	POPTR_0002s07050 (11)	scaffold_2:4768779-4769452(-) (11)	POPTR_0005s21280 (6)	P54772	Histidine decarboxylase	AT1G43710.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os02g33710.1	"decarboxylase, putative, expressed"	Medtr2g008250.1	Pyridoxal-dependent decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12439.1.S1_a_at	A	A1TS	POPTR_0011s09080	POPTR_0011s09080 (11)	scaffold_11:11189218-11189373(-) (11)	NA	NA	NA	AT5G55530.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os03g09840.2	"C2 domain containing protein, putative, expressed"	Medtr3g076960.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12439.10.S1_at	A	A1MS	POPTR_0010s08060	POPTR_0010s08060 (11)	scaffold_10:9009838-9009931(+) (11)	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os02g40880.1	"ribosomal protein L14, putative, expressed"	Medtr8g138420.1	Ribosomal protein L14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.12439.3.A1_a_at	A	A1TS	POPTR_0006s08630	POPTR_0006s08630 (11)	scaffold_6:6312045-6312181(-) (11)	NA	O80932	Expansin-A3	AT2G37640.1	Barwin-like endoglucanases superfamily protein 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12439.5.S1_a_at	A	A1TS	POPTR_0011s09080	POPTR_0011s09080 (11)	scaffold_11:11190258-11190735(-) (11)	NA	NA	NA	AT5G55530.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os03g09840.2	"C2 domain containing protein, putative, expressed"	Medtr3g076960.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12440.1.S1_at	A	A1TS	POPTR_0005s10920	POPTR_0005s10920 (11)	scaffold_5:7855001-7855510(-) (11)	NA	Q9FT72	ATP-dependent DNA helicase Q-like 3	AT4G35740.2	DEAD/DEAH box RNA helicase family protein  	LOC_Os02g54020.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g049580.1	"Helicase, C-terminal "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.124413.1.S1_s_at	A	A1TS	POPTR_0005s20230	POPTR_0005s20230 (11)	scaffold_5:19257205-19258232(-) (11)	NA	NA	NA	AT1G77460.2	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein 	LOC_Os11g08090.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124420.3.S1_a_at	A	A1TS	POPTR_0001s44820	POPTR_0001s44820 (11)	scaffold_1:45188617-45188652(+) (11)//scaffold_1:45213398-45213433(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124420.4.S1_at	A	A1MS	POPTR_0001s44820	POPTR_0001s44820 (11)	scaffold_1:45213158-45213508(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12443.3.A1_at	A	A1TA	POPTR_0013s15380	POPTR_0013s15380 (10)	scaffold_13:15377670-15378166(+) (10)	NA	Q43054	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.12443.4.A1_s_at	A	A1TS	POPTR_0013s15380	POPTR_0013s15380 (11)	scaffold_13:15377798-15378159(-) (11)	NA	Q43054	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.124431.1.A1_at	A	A1TA	POPTR_0014s03840	POPTR_0014s03840 (10)	scaffold_14:3064270-3064792(+) (10)	NA	Q9ZQE5	Pentatricopeptide repeat-containing protein At2g15690	AT2G15690.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g53610.1	"selenium-binding protein, related, putative, expressed"	Medtr6g093250.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124448.1.S1_at	A	A1TS	POPTR_0019s15220	POPTR_0019s15220 (11)	scaffold_19:15783625-15784558(-) (11)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.124466.1.S1_at	A	A1TS	POPTR_0009s06130	POPTR_0009s06130 (11)	scaffold_9:6013113-6013259(-) (11)	NA	NA	NA	AT5G28040.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os07g44200.1	"transcription regulator, putative, expressed"	Medtr1g096530.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124482.1.S1_at	A	A1TS	POPTR_0018s09210	POPTR_0018s09210 (11)	scaffold_18:10086087-10087140(-) (11)	NA	Q53HY2	Ninja-family protein mc410	AT4G28910.3	novel interactor of JAZ 	LOC_Os05g48500.3	expressed protein	Medtr6g098770.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124503.1.S1_at	A	A1TS	POPTR_0008s06790	POPTR_0008s06790 (10)	scaffold_8:4072906-4074019(+) (10)	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g093610.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.124508.1.S1_at	A	A1TS	POPTR_0001s10930	POPTR_0001s10930 (10)	scaffold_1:8480633-8480792(-) (10)	NA	Q8VY91	"30S ribosomal protein S6 alpha, chloroplastic"	AT1G64510.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os03g62630.1	"ribosomal protein S6, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124513.1.S1_at	A	A1TS	POPTR_0002s15610	POPTR_0002s15610 (11)	scaffold_2:11650823-11651339(+) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.124525.1.S1_s_at	A	A2TS	POPTR_0004s22080	POPTR_0009s01980 (11)//POPTR_0004s22080 (11)	scaffold_4:21010249-21011939(+) (11)//scaffold_9:2521538-2522833(+) (11)	NA	Q86VX9	Vacuolar fusion protein MON1 homolog A	AT2G28390.1	SAND family protein 	LOC_Os01g74460.2	"vacuolar fusion protein MON1 homolog A, putative, expressed"	Medtr2g110240.1	Yeast 73.5kDa hypothetical-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124545.1.S1_s_at	A	A1TS	POPTR_0002s23170	POPTR_0002s23170 (11)	scaffold_2:20587778-20589490(+) (11)	NA	P11435	Carboxyvinyl-carboxyphosphonate phosphorylmutase	AT2G43180.1	Phosphoenolpyruvate carboxylase family protein 	LOC_Os04g42580.1	"carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed"	Medtr7g005900.1	Isocitrate lyase and phosphorylmutase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12458.1.S1_at	A	A1TS	POPTR_0006s14310	POPTR_0006s14310 (10)	scaffold_6:11633765-11634323(+) (10)	NA	Q93VM8	Copper transporter 5	AT5G20650.1	copper transporter 5 	LOC_Os09g26900.1	"ctr copper transporter family protein, putative, expressed"	Medtr3g139090.1	Ctr copper transporter 	GO:0006825|copper ion transport	GO:0005375|copper ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.124581.1.S1_s_at	A	A1TS	POPTR_0005s10450	POPTR_0005s10450 (9)	scaffold_5:7501728-7502892(+) (10)	NA	Q9BSD7	Nucleoside-triphosphatase C1orf57	AT5G66005.3	Expressed protein 	NA	NA	Medtr5g024190.1	AAA ATPase 	NA	GO:0016740|transferase activity||GO:0005524|ATP binding	NA
PtpAffx.124583.1.S1_s_at	A	A2TS	POPTR_0002s00880	POPTR_0002s00880 (11)//POPTR_0005s27510 (11)	scaffold_2:414336-415071(+) (11)//scaffold_5:25137343-25138094(-) (11)	NA	P93006	Probable protein phosphatase 2C 27	AT2G33700.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr3g160100.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12459.1.A1_at	A	A1TS	POPTR_0002s17140	POPTR_0002s17140 (10)	scaffold_2:12930898-12932258(+) (11)	NA	Q6IQ49	UPF0667 protein C1orf55	AT4G01000.1	Ubiquitin-like superfamily protein 	LOC_Os01g48930.1	"splicing factor-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124592.1.S1_s_at	A	A1TS	POPTR_0002s18900	POPTR_0002s18900 (11)	scaffold_2:14800678-14801037(+) (11)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os10g01550.2	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.124599.1.S1_at	A	A1TS	POPTR_0018s07580	POPTR_0018s07580 (11)	scaffold_18:7964179-7964633(-) (11)	NA	NA	NA	AT4G32960.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os06g05720.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124607.1.S1_at	A	A1TS	POPTR_0010s23520	POPTR_0010s23520 (9)	scaffold_10:20073065-20074973(+) (9)	NA	NA	NA	AT2G36840.1	ACT-like superfamily protein 	LOC_Os09g39740.1	"ACT domain containing protein, expressed"	Medtr7g124000.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.124616.1.S1_s_at	A	A1TS	POPTR_0017s13810	POPTR_0017s13810 (11)	scaffold_17:14035501-14035836(+) (11)	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.124618.1.S1_at	A	A1TS	POPTR_0002s14380	POPTR_0002s14380 (11)	scaffold_2:10643603-10644038(+) (11)	NA	O49741	GATA transcription factor 2	AT2G45050.1	GATA transcription factor 2 	LOC_Os05g44400.1	"GATA zinc finger domain containing protein, expressed"	Medtr3g130480.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.124621.1.S1_s_at	A	A1TS	POPTR_0001s07850	POPTR_0001s07850 (11)	scaffold_1:5946191-5946599(+) (11)	NA	P37120	"Flavonoid 3',5'-hydroxylase"	AT4G12320.1	"cytochrome P450, family 706, subfamily A, polypeptide 6 "	LOC_Os08g43440.1	"cytochrome P450, putative, expressed"	Medtr3g169570.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.124623.1.S1_at	A	A1TS	POPTR_0002s05470	POPTR_0002s05470 (11)	scaffold_2:3568526-3572049(+) (11)	NA	NA	NA	AT4G02830.1	unknown protein; Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr1g086470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124644.1.S1_at	A	A1TS	POPTR_0010s14480	POPTR_0010s14480 (11)	scaffold_10:14075493-14077098(-) (11)	NA	Q6NQI8	LAG1 longevity assurance homolog 3	AT1G13580.3	LAG1 longevity assurance homolog 3 	LOC_Os02g37080.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.124647.1.S1_at	A	A1TS	POPTR_0014s18660	POPTR_0014s18660 (9)	scaffold_14:15999999-16000654(-) (9)	NA	Q5EB92	WD repeat-containing protein 70	AT2G20330.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g32710.3	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g117340.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124648.1.S1_s_at	A	A1TS	POPTR_0008s11650	POPTR_0008s11650 (11)	scaffold_8:7442287-7442519(+) (11)	NA	Q6GP15	Mediator of RNA polymerase II transcription subunit 25	AT1G25540.1	phytochrome and flowering time regulatory protein (PFT1) 	LOC_Os09g13610.1	"PFT1, putative, expressed"	Medtr5g068600.1	"PFT1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124649.1.S1_a_at	A	A1TS	POPTR_0019s08330	POPTR_0019s08330 (11)	scaffold_19:9824981-9825382(+) (11)	NA	Q6AWX0	D-xylose-proton symporter-like 2	AT5G17010.3	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.124649.1.S1_at	A	A1TS	POPTR_0019s08330	POPTR_0019s08330 (10)	scaffold_19:9826806-9827723(+) (10)	NA	Q6AWX0	D-xylose-proton symporter-like 2	AT5G17010.3	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.124649.2.A1_at	A	A1MS	POPTR_0019s08330	POPTR_0019s08330 (9)	scaffold_19:9825070-9825600(+) (9)	NA	Q6AWX0	D-xylose-proton symporter-like 2	AT5G17010.3	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.124650.1.S1_at	A	A1TS	POPTR_0018s02190	POPTR_0018s02190 (9)	scaffold_18:1939178-1939512(-) (9)	NA	D2XNQ8	Flotillin-like protein 1	AT5G25260.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os10g34040.1	"nodulin, putative, expressed"	Medtr3g137810.1	"nodulin, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124651.1.S1_at	A	A1TS	POPTR_0009s02100	POPTR_0009s02100 (11)	scaffold_9:2709659-2710647(-) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr2g104740.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.124666.1.S1_at	A	A1TS	POPTR_0008s14250	POPTR_0008s14250 (9)	scaffold_211:23704-26034(-) (9)//scaffold_8:9426296-9427209(+) (9)	POPTR_0008s14260 (8)//POPTR_0211s00210 (6)	Q8BV79	TPR and ankyrin repeat-containing protein 1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g51090.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr3g169640.1	"Helicase, superfamily 1, UvrD-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124689.1.S1_at	A	A1TS	POPTR_0002s24970	POPTR_0002s24970 (11)	scaffold_2:22161726-22163490(+) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT3G25230.1	rotamase FKBP 1 	LOC_Os08g41390.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.124690.1.S1_at	A	A1TS	POPTR_0003s12750	POPTR_0003s12750 (11)	scaffold_3:13231518-13234157(+) (11)	POPTR_0001s09380 (6)	NA	NA	AT4G11560.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g34330.1	"BAH domain containing protein, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding	NA
PtpAffx.124709.1.S1_at	A	A1TS	POPTR_0002s16420	POPTR_0002s16420 (10)	scaffold_2:12286160-12288512(-) (10)	NA	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
PtpAffx.12471.1.S1_at	A	A1TS	POPTR_0004s06700	POPTR_0004s06700 (11)	scaffold_4:5364176-5365958(-) (11)	NA	NA	NA	AT2G25720.1	unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g47820.1	expressed protein	Medtr6g038880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124711.1.S1_at	A	A1TS	POPTR_0006s21940	POPTR_0006s21940 (9)	scaffold_6:20910942-20911445(+) (9)	NA	NA	NA	AT3G05675.1	BTB/POZ domain-containing protein 	LOC_Os07g47260.1	"H-BTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	AC233661_10.2	hypothetical protein AC233661.2 56500-58369 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.124715.1.S1_at	A	A1TS	POPTR_0013s06910	POPTR_0013s06910 (10)	scaffold_13:5608715-5609051(-) (10)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G17630.1	Nucleotide/sugar transporter family protein 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr2g034800.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.124719.1.S1_s_at	A	A2TS	POPTR_0004s21670	POPTR_0004s21670 (11)//POPTR_0009s16920 (11)	scaffold_4:20729641-20730348(+) (10)//scaffold_9:12767960-12768606(+) (11)	NA	Q9XGM8	"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase"	AT4G38240.2	"alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative "	LOC_Os02g58590.1	"N-acetylglucosaminyltransferase I, putative, expressed"	Medtr3g164080.1	"Glycosyl transferase, family 13 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003827|""alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity"""	GO:0000139|Golgi membrane
PtpAffx.124732.1.S1_s_at	A	A1TS	POPTR_0019s09350	POPTR_0019s09350 (11)	scaffold_19:10922559-10923226(+) (11)	NA	NA	NA	AT2G40815.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	NA	NA	Medtr5g077910.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124734.1.S1_at	A	A1TS	POPTR_0011s12320	POPTR_0011s12320 (10)	scaffold_11:15044824-15048491(-) (10)	NA	Q9XSC3	WD repeat-containing protein 44	AT3G15470.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58180.1	"WD-40 repeat family protein, putative, expressed"	Medtr7g067570.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124766.1.S1_at	A	A1TS	POPTR_0016s12700	POPTR_0016s12700 (11)	scaffold_16:12080532-12082421(+) (11)	NA	P33303	Succinate/fumarate mitochondrial transporter	AT5G01340.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18160.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124786.1.S1_at	A	A1TS	POPTR_0019s03980	POPTR_0019s03980 (11)	scaffold_19:1078954-1079159(+) (11)//scaffold_19:4086867-4087077(+) (11)//scaffold_19:7029272-7029479(+) (10)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	LOC_Os02g02930.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.12479.1.S1_s_at	A	A1TS	POPTR_0008s01310	POPTR_0008s01310 (11)	scaffold_8:634843-635171(-) (11)	NA	Q66GR0	Fasciclin-like arabinogalactan protein 17	AT5G06390.1	FASCICLIN-like arabinogalactan protein 17 precursor 	LOC_Os03g57460.1	"fasciclin domain containing protein, expressed"	Medtr2g104610.1	Beta-Ig-H3/fasciclin; Myristoyl-CoA:protein N-myristoyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12481.1.A1_at	A	A1TS	POPTR_0008s06430	POPTR_0008s06430 (11)	scaffold_8:3819815-3820720(+) (11)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g089140.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.12481.2.A1_at	A	A1TS	POPTR_0010s20050	POPTR_0010s20050 (11)	scaffold_10:17803897-17804211(-) (11)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g089140.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.124818.1.S1_at	A	A1TS	POPTR_0011s11680	POPTR_0011s11680 (11)	scaffold_11:14458532-14459703(-) (11)	NA	B2SYT3	Ribosomal protein L11 methyltransferase	AT5G53920.1	ribosomal protein L11 methyltransferase-related 	LOC_Os05g41800.1	"ribosomal protein L11 methyltransferase-related, putative, expressed"	Medtr8g071230.1	Ribosomal L11 methyltransferase 	GO:0006479|protein amino acid methylation||GO:0044281|small molecule metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0008276|protein methyltransferase activity	GO:0005737|cytoplasm
PtpAffx.124822.1.S1_at	A	A2TS	POPTR_0013s03430	POPTR_0013s03560 (11)//POPTR_0013s03430 (11)	scaffold_13:2118373-2120326(+) (11)//scaffold_13:2260118-2262088(-) (11)	NA	O23969	Pollen-specific protein SF21	AT5G56750.1	N-MYC downregulated-like 1 	LOC_Os01g09670.1	"pollen-specific protein SF21, putative, expressed"	Medtr1g096280.1	Ndr 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124829.1.S1_at	A	A1TS	POPTR_0017s08370	POPTR_0017s08370 (11)	scaffold_17:6886999-6888902(-) (11)	NA	NA	NA	AT2G32760.1	unknown protein; Has 229 Blast hits to 229 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os06g50110.1	expressed protein	Medtr4g133650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124837.1.A1_at	A	A1TS	POPTR_0003s07750	POPTR_0003s07750 (11)	scaffold_3:9253222-9253871(-) (11)	NA	Q84JU6	E3 ubiquitin-protein ligase HOS1	AT2G39810.1	ubiquitin-protein ligases 	LOC_Os03g52700.1	expressed protein	Medtr5g013030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124839.1.A1_at	A	A1TS	POPTR_0010s12280	POPTR_0010s12280 (11)	scaffold_10:12320633-12323140(+) (11)	NA	Q55681	ATP-dependent DNA helicase recG	AT2G01440.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os02g48100.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g034620.1	ATP-requiring DNA helicase RecQ 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.124847.1.S1_s_at	A	A1TS	POPTR_0013s05480	POPTR_0013s05480 (11)	scaffold_13:3921209-3921931(+) (11)	NA	Q43314	Glutamate dehydrogenase 1	AT5G18170.1	glutamate dehydrogenase 1 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.124853.1.S1_s_at	A	A1TS	POPTR_0005s25880	POPTR_0005s25880 (11)	scaffold_5:24099697-24100283(+) (11)	NA	B9F166	Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2	AT5G06300.1	Putative lysine decarboxylase family protein 	LOC_Os02g41770.1	"uncharacterized protein PA4923, putative"	Medtr3g156140.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12487.1.S1_at	A	A1TS	POPTR_0003s15280	POPTR_0003s15280 (9)	scaffold_3:15126727-15127263(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.12493.1.A1_at	A	A1TS	POPTR_0013s11360	POPTR_0013s11360 (11)	scaffold_13:12008117-12008514(+) (11)	NA	Q9S9K9	Transcription factor MYB3	AT1G22640.1	myb domain protein 3 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12496.1.S1_at	A	A1TS	POPTR_0001s45910	POPTR_0001s45910 (11)	scaffold_1:46414916-46415066(+) (11)	NA	NA	NA	AT1G33265.1	Transmembrane proteins 14C 	LOC_Os04g48840.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12496.2.A1_at	A	A1TS	POPTR_0011s15010	POPTR_0011s15010 (11)	scaffold_11:17210776-17213365(-) (11)	NA	NA	NA	AT1G33265.1	Transmembrane proteins 14C 	LOC_Os04g48840.1	expressed protein	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.12497.1.S1_at	A	A1TS	POPTR_0014s15660	POPTR_0014s15660 (11)	scaffold_14:11675761-11676546(+) (11)	NA	Q8VYE5	"Glucan endo-1,3-beta-glucosidase 12"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.12497.1.S1_s_at	A	A1TS	POPTR_0014s15660	POPTR_0014s15660 (11)	scaffold_14:11675624-11676671(+) (11)	NA	Q8VYE5	"Glucan endo-1,3-beta-glucosidase 12"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.124979.1.S1_at	A	A1TS	POPTR_0010s15260	POPTR_0010s15260 (11)	scaffold_10:14580982-14581588(-) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g038600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125.1.S1_at	A	A1TS	POPTR_0003s12340	POPTR_0003s12340 (11)	scaffold_3:12942906-12943480(-) (11)	NA	Q641W4	Replication factor C subunit 2	AT1G63160.1	replication factor C 2 	LOC_Os04g48060.1	"RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed"	Medtr3g100710.1	"AAA ATPase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
PtpAffx.1250.1.S1_a_at	A	A1TS	POPTR_0015s13440	POPTR_0015s13440 (11)	scaffold_15:13394029-13394448(-) (11)	NA	NA	NA	AT5G52200.1	phosphoprotein phosphatase inhibitors 	LOC_Os05g23610.1	"protein phosphatase inhibitor 2 containing protein, expressed"	NA	NA	GO:0023051|regulation of signaling process||GO:0023052|signaling||GO:0009966|regulation of signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0043666|regulation of phosphoprotein phosphatase activity	GO:0004864|phosphoprotein phosphatase inhibitor activity	NA
PtpAffx.1250.3.A1_a_at	A	A1TS	POPTR_0012s13450	POPTR_0012s13450 (11)	scaffold_12:13607587-13608505(-) (11)	NA	NA	NA	AT5G52200.1	phosphoprotein phosphatase inhibitors 	LOC_Os05g23610.2	"protein phosphatase inhibitor 2 containing protein, expressed"	NA	NA	GO:0023051|regulation of signaling process||GO:0023052|signaling||GO:0009966|regulation of signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0043666|regulation of phosphoprotein phosphatase activity	GO:0004864|phosphoprotein phosphatase inhibitor activity	NA
PtpAffx.1250.4.S1_at	A	A1MS	POPTR_0015s13440	POPTR_0015s13440 (11)	scaffold_15:13393978-13394520(-) (11)	NA	NA	NA	AT5G52200.1	phosphoprotein phosphatase inhibitors 	LOC_Os05g23610.1	"protein phosphatase inhibitor 2 containing protein, expressed"	NA	NA	GO:0023051|regulation of signaling process||GO:0023052|signaling||GO:0009966|regulation of signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0043666|regulation of phosphoprotein phosphatase activity	GO:0004864|phosphoprotein phosphatase inhibitor activity	NA
PtpAffx.125014.1.S1_s_at	A	A1TS	POPTR_0002s22380	POPTR_0002s22380 (11)	scaffold_2:19085348-19085908(-) (11)	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125017.1.S1_s_at	A	A1TS	POPTR_0018s01990	POPTR_0018s01990 (11)	scaffold_18:1791992-1792895(-) (11)	NA	Q949Y3	Bifunctional purple acid phosphatase 26	AT5G34850.1	purple acid phosphatase 26 	LOC_Os06g43640.2	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.125062.1.S1_at	A	A1TS	POPTR_0018s12160	POPTR_0018s12160 (10)	scaffold_18:12727434-12727839(-) (10)	NA	B3MPC0	Zinc finger CCCH-type with G patch domain-containing protein	AT3G09850.1	D111/G-patch domain-containing protein 	LOC_Os08g19170.1	"G-patch domain containing protein, expressed"	Medtr8g122840.1	D111/G-patch; Single-stranded nucleic acid binding R3H 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.125065.1.S1_at	A	A1TS	POPTR_0015s10620	POPTR_0015s10620 (10)	scaffold_15:11481628-11482098(-) (10)	NA	Q9QYY8	Spastin	AT4G02480.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g117540.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.12507.1.A1_at	A	A1TS	POPTR_0003s09400	POPTR_0003s09400 (11)	scaffold_3:10689020-10690083(-) (11)	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr8g077680.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.12507.2.S1_s_at	A	A2TS	POPTR_0001s02100	POPTR_0001s02100 (11)//POPTR_0003s09400 (11)	scaffold_1:1572295-1574029(+) (11)//scaffold_3:10691033-10692480(-) (11)	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr8g077680.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.1251.1.S1_at	A	A1TS	POPTR_0014s15580	POPTR_0014s15580 (10)	scaffold_14:11592607-11593137(-) (10)	NA	Q9LVE0	Nitrate transporter 1.3	AT3G21670.1	Major facilitator superfamily protein 	LOC_Os02g37040.1	"peptide transporter PTR3-A, putative, expressed"	Medtr5g093170.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.1251.2.S1_at	A	A1TS	POPTR_0002s21630	POPTR_0002s21630 (11)	scaffold_2:18144799-18145246(-) (11)	NA	Q9LVE0	Nitrate transporter 1.3	AT3G21670.1	Major facilitator superfamily protein 	LOC_Os02g37040.1	"peptide transporter PTR3-A, putative, expressed"	Medtr5g093170.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.125148.1.S1_at	A	A1TS	POPTR_0006s28360	POPTR_0006s28360 (11)	scaffold_6:26065646-26065684(-) (11)	NA	Q96361	ADP-ribosylation factor 1	AT2G24765.1	ADP-ribosylation factor 3 	LOC_Os08g15040.1	"ADP-ribosylation factor, putative, expressed"	Medtr8g128220.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.125154.1.S1_at	A	A1MS	POPTR_0019s06030	POPTR_0019s06030 (9)	scaffold_19:6487183-6487737(-) (10)	NA	Q9P6P3	Serine/threonine-protein kinase ppk15	AT5G35980.1	yeast YAK1-related gene 1 	LOC_Os02g47410.1	"protein kinase, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.125163.2.S1_s_at	A	A1TS	POPTR_0015s01950	POPTR_0015s01950 (11)	scaffold_15:1367385-1368179(+) (11)	NA	Q03460	"Glutamate synthase [NADH], amyloplastic"	AT5G53460.3	NADH-dependent glutamate synthase 1 	LOC_Os01g48960.1	"glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process||GO:0044281|small molecule metabolic process	GO:0015930|glutamate synthase activity||GO:0050660|FAD binding	NA
PtpAffx.125170.1.S1_s_at	A	A1TS	POPTR_0006s25960	POPTR_0006s25960 (11)	scaffold_6:24260727-24261690(-) (11)	NA	O49343	Pentatricopeptide repeat-containing protein At2g30780	AT2G30780.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06370.2	"PPR repeat domain containing protein, putative, expressed"	Medtr1g009460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125211.1.S1_s_at	A	A2TS	POPTR_0001s27440	POPTR_0001s27440 (11)//POPTR_0009s06650 (11)	scaffold_1:26341626-26344192(-) (11)//scaffold_9:6389249-6391746(-) (11)	NA	Q9SZ30	"Imidazole glycerol phosphate synthase hisHF, chloroplastic"	AT4G26900.1	HIS HF 	LOC_Os03g15120.1	"imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.125245.1.S1_a_at	A	A1TS	POPTR_0019s07920	POPTR_0019s07920 (11)	scaffold_19:9219509-9219695(+) (11)	NA	P91924	ADP-ribosylation factor	AT5G17060.1	ADP-ribosylation factor B1B 	LOC_Os10g42940.1	"miro, putative, expressed"	Medtr4g106940.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.125245.2.S1_at	A	A1MS	POPTR_0013s09660	POPTR_0013s09660 (10)	scaffold_13:9503751-9504140(-) (10)	NA	P91924	ADP-ribosylation factor	AT5G17060.1	ADP-ribosylation factor B1B 	LOC_Os10g42940.1	"miro, putative, expressed"	Medtr4g106940.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.125257.1.S1_a_at	A	A2TS	POPTR_0006s14830	POPTR_0018s05410 (11)//POPTR_0006s14830 (11)	scaffold_18:4946919-4946961(-) (11)//scaffold_6:12255809-12255851(-) (11)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125257.1.S1_at	A	A1TS	POPTR_0006s14830	POPTR_0006s14830 (9)	scaffold_6:12255792-12256663(-) (9)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125257.2.S1_a_at	A	A1TS	POPTR_0018s05410	POPTR_0018s05410 (11)	scaffold_18:4945947-4947366(-) (11)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125257.3.S1_at	A	A1MS	POPTR_0018s05410	POPTR_0018s05410 (11)	scaffold_18:4945263-4945621(-) (11)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125271.1.S1_s_at	A	A1TS	POPTR_0007s01950	POPTR_0007s01950 (11)	scaffold_7:1107640-1107872(+) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G07500.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr2g118460.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125283.1.S1_x_at	A	A1TS	POPTR_0009s03160	POPTR_0009s03160 (9)	scaffold_9:3827218-3827459(-) (10)	NA	Q9LQQ8	Probable serine/threonine-protein kinase RLCKVII	AT1G07870.2	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g113860.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.125310.1.S1_at	A	A1MS	POPTR_0018s05010	POPTR_0018s05010 (11)	scaffold_18:4435539-4435609(-) (11)	NA	Q8UVD9	Far upstream element-binding protein 2	AT2G25970.1	KH domain-containing protein 	LOC_Os02g13130.1	"KH domain-containing protein, putative, expressed"	Medtr1g020830.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.125321.1.S1_at	A	A1TS	POPTR_0005s24860	POPTR_0005s24860 (10)	scaffold_5:23284328-23285722(+) (10)	NA	P42158	Casein kinase I isoform delta-like	AT4G28540.1	casein kinase I-like 6 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.125321.2.S1_at	A	A1TS	POPTR_0002s03730	POPTR_0002s03730 (11)	scaffold_2:2321094-2321454(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G28540.1	casein kinase I-like 6 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.125332.1.S1_at	A	A1TS	POPTR_0007s15180	POPTR_0007s15180 (9)	scaffold_7:14800492-14800990(+) (9)	NA	B6EXY6	Beta-amyrin synthase	AT1G78950.1	Terpenoid cyclases family protein 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.125337.1.S1_at	A	A1TS	POPTR_0011s13970	POPTR_0011s13970 (11)	scaffold_11:16571963-16574851(+) (11)	NA	NA	NA	AT1G50910.1	unknown protein; Has 1105 Blast hits to 802 proteins in 217 species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other Eukaryotes - 207 (source: NCBI BLink). 	LOC_Os09g32710.1	expressed protein	Medtr3g020830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125350.1.S1_at	A	A1TS	POPTR_0013s04560	POPTR_0013s04560 (10)	scaffold_13:3124002-3124222(-) (10)	NA	Q9FNC7	Histone-lysine N-methyltransferase SUVR2	AT5G43990.5	SET-domain containing protein lysine methyltransferase family protein 	LOC_Os02g40770.2	"SET domain containing protein, expressed"	Medtr1g093770.1	Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.125359.1.S1_at	A	A1TS	POPTR_0005s21130	POPTR_0005s21130 (11)	scaffold_5:20265048-20265524(-) (11)	NA	P68349	Dof zinc finger protein DOF1.2	AT1G21340.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os05g36900.1	"dof zinc finger domain containing protein, putative"	Medtr3g125030.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.125364.1.S1_at	A	A1TS	POPTR_0004s07380	POPTR_0004s07380 (11)	scaffold_4:6085196-6086859(-) (11)	NA	NA	NA	AT3G03270.2	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g53320.1	"universal stress protein domain containing protein, putative, expressed"	Medtr5g084990.2	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.125366.1.S1_s_at	A	A1TS	POPTR_0006s02220	POPTR_0006s02220 (11)	scaffold_6:1458111-1458532(-) (11)	NA	Q9FHZ1	Scarecrow-like protein 23	AT5G41920.1	GRAS family transcription factor 	LOC_Os07g38030.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g103580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125368.1.S1_at	A	A1TS	POPTR_0019s04110	POPTR_0019s04110 (10)	scaffold_19:4214327-4216256(+) (10)	NA	Q9M8Y5	GDSL esterase/lipase LTL1	AT3G04290.1	Li-tolerant lipase 1 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143160.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.125369.1.S1_at	A	A1TS	POPTR_0007s06890	POPTR_0007s06890 (11)	scaffold_7:5209495-5209960(-) (11)	NA	Q7Y1W9	Zinc finger A20 and AN1 domain-containing stress-associated protein 9	AT2G36320.1	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g111060.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.125394.1.S1_at	A	A1TS	POPTR_0004s14900	POPTR_0004s14900 (10)	scaffold_4:15562455-15562880(-) (10)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.125398.1.A1_at	A	A1TS	POPTR_0002s16750	POPTR_0002s16750 (11)	scaffold_2:12516853-12519156(+) (11)	NA	Q8S8M5	Protein ABIL1	AT2G46225.1	ABI-1-like 1 	LOC_Os01g43420.1	expressed protein	Medtr7g143400.1	"Protein ABIL2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125399.1.S1_at	A	A1TS	POPTR_0008s14780	POPTR_0008s14780 (11)	scaffold_8:9818681-9818756(+) (11)	NA	Q9ZVH4	Cullin-3A	AT1G26830.1	cullin 3 	LOC_Os02g51180.1	"cullin, putative, expressed"	AC146568_13.1	Cullin; Winged helix repressor DNA-binding AC146568.11 77878-70908 E EGN_Mt090430 200	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.125400.1.S1_s_at	A	A1TS	POPTR_0003s15120	POPTR_0003s15120 (11)	scaffold_3:14974268-14974933(+) (11)	NA	Q9C8Z4	Uncharacterized protein At3g06530	AT3G06530.2	ARM repeat superfamily protein 	LOC_Os04g46310.1	"HEAT repeat family protein, putative, expressed"	Medtr5g099720.1	"BP28, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125401.1.S1_at	A	A1TS	POPTR_0001s00380	POPTR_0001s00380 (9)	scaffold_1:259389-259744(-) (9)	NA	NA	NA	AT4G22560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 380 Blast hits to 380 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g44280.1	"zinc finger protein, putative"	Medtr5g012350.1	"AT1G62520, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125404.1.S1_at	A	A1TS	POPTR_0004s10510	POPTR_0004s10510 (10)	scaffold_4:9054862-9056738(+) (11)	NA	NA	NA	AT5G15880.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g02130.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125413.1.S1_at	A	A1TS	POPTR_0007s04550	POPTR_0007s04550 (10)	scaffold_7:2824170-2824592(+) (10)	NA	Q55EX9	Putative methyltransferase DDB_G0268948	AT4G22530.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g40660.1	"methyltransferase, putative, expressed"	Medtr7g107220.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.125423.1.S1_at	A	A1TS	POPTR_0013s00880	POPTR_0013s00880 (11)	scaffold_13:446995-448160(-) (11)	NA	Q96321	Importin subunit alpha-1	AT1G09270.2	importin alpha isoform 4 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.125439.1.S1_s_at	A	A1TS	POPTR_0010s10930	POPTR_0010s10930 (11)	scaffold_10:11313829-11315061(+) (11)	NA	Q9H4L7	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	AT2G02090.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os04g47830.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g019900.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.125442.1.S1_at	A	A1TS	POPTR_0001s12350	POPTR_0001s12350 (11)	scaffold_1:9566749-9566795(+) (11)	NA	Q7Y1X1	Esterase	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g037600.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.125442.1.S1_s_at	A	A1TS	POPTR_0001s12350	POPTR_0001s12350 (11)	scaffold_1:9566804-9567964(+) (11)	NA	Q7Y1X1	Esterase	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g037600.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.125453.1.A1_a_at	A	A2TS	POPTR_0002s09800	POPTR_0002s09800 (11)//POPTR_0005s17170 (11)	scaffold_2:7027259-7027307(+) (11)//scaffold_5:14327829-14327877(+) (11)	NA	Q9D2H9	Leucine-rich repeat-containing protein 50	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.125453.1.A1_at	A	A1TS	POPTR_0005s17170	POPTR_0005s17170 (11)	scaffold_5:14328065-14328370(+) (11)	NA	Q9D2H9	Leucine-rich repeat-containing protein 50	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.125457.1.S1_at	A	A1MS	POPTR_0006s29120	POPTR_0006s29120 (9)	scaffold_6:26595356-26595852(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125515.1.S1_at	A	A1TS	POPTR_0009s14130	POPTR_0009s14130 (11)	scaffold_9:11137142-11137329(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr1g143280.1	Tyrosine protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12552.1.A1_at	A	A1TS	POPTR_0010s20240	POPTR_0010s20240 (11)	scaffold_10:17917924-17918251(+) (11)	POPTR_0008s06280 (6)	NA	NA	AT5G05840.1	Protein of unknown function (DUF620) 	LOC_Os03g16060.1	expressed protein	Medtr3g092680.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125536.1.S1_at	A	A1TS	POPTR_0002s18190	POPTR_0002s18190 (10)	scaffold_2:14129595-14130140(+) (10)	NA	Q6R0H1	Protein LHY	AT1G01060.3	Homeodomain-like superfamily protein 	LOC_Os08g06110.5	"MYB family transcription factor, putative, expressed"	Medtr7g146200.1	"Ankyrin, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125577.1.A1_at	A	A1TS	POPTR_0001s32900	POPTR_0001s32900 (11)	scaffold_1:31173854-31174932(-) (11)	NA	P44446	Putative long-chain-fatty-acid--CoA ligase	AT3G23790.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g62850.1	"AMP-binding enzyme, putative, expressed"	Medtr3g104670.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.125581.1.A1_at	A	A1TS	POPTR_0011s14890	POPTR_0011s14890 (11)	scaffold_11:17139093-17140659(-) (11)	NA	Q9ASU1	Diacylglycerol O-acyltransferase 2	AT3G51520.1	diacylglycerol acyltransferase family 	LOC_Os06g22080.1	"diacylglycerol O-acyltransferase, putative, expressed"	Medtr5g024950.1	Diacylglycerol acyltransferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.125602.2.A1_a_at	A	A1TS	POPTR_0012s12960	POPTR_0012s12960 (11)	scaffold_12:13302319-13303149(-) (11)	NA	Q5F389	WW domain-containing oxidoreductase	AT4G23420.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.125608.1.A1_at	A	A2TS	POPTR_0008s01130	POPTR_0008s01130 (11)//POPTR_0010s25440 (11)	scaffold_10:21125140-21126419(+) (11)//scaffold_8:544973-546509(-) (11)	NA	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os01g59760.1	"bZIP transcription factor, putative, expressed"	Medtr8g047750.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.1257.1.S1_a_at	A	A1TS	POPTR_0001s07520	POPTR_0001s07520 (10)	scaffold_1:5649278-5649550(-) (10)	POPTR_0003s18530 (8)	A7S4N4	Probable serine incorporator	AT1G16180.2	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os02g54990.2	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.1257.1.S1_x_at	A	A1TS	POPTR_0003s18530	POPTR_0003s18530 (11)	scaffold_3:17581430-17582184(+) (11)	NA	Q5R533	Serine incorporator 3	AT1G16180.2	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os02g54990.2	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.1257.2.A1_at	A	A1TS	POPTR_0001s07520	POPTR_0001s07520 (11)	scaffold_1:5649191-5650053(-) (11)	NA	A7S4N4	Probable serine incorporator	AT1G16180.2	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os02g54990.2	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.1257.3.A1_at	A	A1TS	POPTR_0003s11060	POPTR_0003s11060 (9)	scaffold_3:11910192-11910657(+) (9)	NA	Q00451	36.4 kDa proline-rich protein	AT1G62500.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g43600.2	"LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1257.4.S1_a_at	A	A2TS	POPTR_0001s07520	POPTR_0001s07520 (11)//POPTR_0003s18530 (11)	scaffold_1:5651379-5652532(-) (11)//scaffold_3:17578997-17580153(+) (11)	NA	A7S4N4	Probable serine incorporator	AT1G16180.2	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os02g54990.2	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.1257.4.S1_at	A	A1TS	POPTR_0001s07520	POPTR_0001s07520 (11)	scaffold_1:5651449-5652513(-) (11)	NA	A7S4N4	Probable serine incorporator	AT1G16180.2	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os02g54990.2	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.125735.1.A1_at	A	A1TS	POPTR_0003s18550	POPTR_0003s18550 (11)	scaffold_3:17598892-17600852(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT1G79640.2	Protein kinase superfamily protein 	LOC_Os02g54900.1	"STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g023360.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12575.1.A1_at	A	A1TS	POPTR_0011s11010	POPTR_0011s11010 (11)	scaffold_11:13713450-13715579(+) (11)	NA	B3DNN5	Anaphase-promoting complex subunit 6	AT1G78770.1	anaphase promoting complex 6 	LOC_Os03g13370.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g068500.1	"Cell division cycle protein 16 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12579.1.S1_s_at	A	A1TS	POPTR_0004s15370	POPTR_0004s15370 (11)	scaffold_4:16019905-16021423(+) (11)	NA	NA	NA	AT2G15900.1	"Phox-associated domain;Phox-like;Sorting nexin, C-terminal "	LOC_Os11g06040.1	"PX domain containing protein, putative, expressed"	Medtr4g128670.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.125792.1.A1_at	A	A1TS	POPTR_0005s08230	POPTR_0005s08230 (11)	scaffold_5:5674266-5674690(+) (11)	NA	Q9JIX8	Apoptotic chromatin condensation inducer in the nucleus	AT4G39680.2	SAP domain-containing protein 	LOC_Os03g26630.2	"SAP domain containing protein, expressed"	Medtr3g101020.1	Borrelia outer surface lipoprotein; DNA-binding SAP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.125795.1.A1_s_at	A	A1TS	POPTR_0012s13920	POPTR_0012s13920 (11)	scaffold_12:13864391-13864800(+) (11)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.125795.2.A1_at	A	A1MS	POPTR_0012s13920	POPTR_0012s13920 (11)	scaffold_12:13864499-13864733(+) (11)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.125797.1.A1_at	A	A1TS	POPTR_0004s04460	POPTR_0004s04460 (10)	scaffold_4:3236565-3236924(+) (10)	NA	NA	NA	AT1G28280.2	VQ motif-containing protein 	LOC_Os01g54400.1	"VQ domain containing protein, putative, expressed"	Medtr2g017460.1	DNA-binding WRKY; VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1258.1.S1_s_at	A	A1TS	POPTR_0001s31700	POPTR_0001s31700 (11)	scaffold_1:30055038-30055330(-) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.1258.4.S1_s_at	A	A2TS	POPTR_0001s31700	POPTR_0001s31700 (11)//POPTR_0019s02630 (11)	scaffold_1:30055237-30055284(-) (11)//scaffold_19:2445325-2445372(+) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.1258.6.A1_a_at	A	A1TS	POPTR_0017s07540	POPTR_0017s07540 (11)	scaffold_17:5870589-5870909(-) (11)	NA	Q9FMF5	Root phototropism protein 3	AT5G64330.1	Phototropic-responsive NPH3 family protein 	LOC_Os02g35970.1	"BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr4g120980.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.1258.8.A1_a_at	A	A2TS	POPTR_0001s08690	POPTR_0001s08690 (11)//POPTR_0003s12100 (11)	scaffold_1:6638634-6639375(-) (11)//scaffold_3:12777169-12777901(-) (11)	NA	Q5R831	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT4G23010.1	UDP-galactose transporter 2 	LOC_Os03g02670.2	"transporter family protein, putative, expressed"	Medtr7g083930.2	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12580.1.A1_at	A	A1TS	POPTR_0009s16060	POPTR_0009s16060 (11)	scaffold_9:12288120-12288628(-) (11)	NA	NA	NA	AT2G27090.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os03g20530.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g094830.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125801.1.A1_at	A	A1TS	POPTR_0008s20630	POPTR_0008s20630 (11)	scaffold_8:14390346-14390445(-) (11)	NA	A7S4N4	Probable serine incorporator	AT3G06170.1	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os03g34300.1	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.125801.1.A1_s_at	A	A1TS	POPTR_0008s20630	POPTR_0008s20630 (11)	scaffold_8:14390477-14390905(-) (11)	NA	A7S4N4	Probable serine incorporator	AT3G06170.1	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os03g34300.1	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.125836.1.A1_at	A	A1TS	POPTR_0012s06830	POPTR_0012s06830 (11)	scaffold_12:7309113-7310339(+) (11)	NA	Q9S7P9	SNAP25 homologous protein SNAP33	AT5G61210.1	soluble N-ethylmaleimide-sensitive factor adaptor protein 33 	LOC_Os02g24080.5	"SNARE domain containing protein, putative, expressed"	Medtr5g046670.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12584.1.S1_at	A	A1TS	POPTR_0004s10580	POPTR_0004s10580 (11)	scaffold_4:9108537-9108945(-) (11)	POPTR_0017s14230 (7)	O27628	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1"	AT3G30841.1	Cofactor-independent phosphoglycerate mutase 	LOC_Os12g35040.1	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0046872|metal ion binding	NA
PtpAffx.125849.1.A1_at	A	A1TS	POPTR_0002s03110	POPTR_0002s03110 (11)	scaffold_2:1929489-1929963(-) (11)	NA	A7SWD3	UPF0559 protein v1g247787	AT1G06060.1	LisH and RanBPM domains containing protein 	LOC_Os01g56820.1	"AGAP000951-PA, putative, expressed"	Medtr1g024890.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125874.1.A1_at	A	A1TS	POPTR_0002s14550	POPTR_0002s14550 (11)	scaffold_2:10816556-10817061(+) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44370.1	"scarecrow, putative, expressed"	Medtr4g029280.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1259.1.S1_s_at	A	A1TS	POPTR_0001s24670	POPTR_0001s24670 (11)	scaffold_1:23921036-23922939(-) (11)	NA	NA	NA	AT2G28900.1	outer plastid envelope protein 16-1 	LOC_Os05g02060.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr8g137810.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.125908.1.A1_at	A	A1TS	POPTR_0007s12670	POPTR_0007s12670 (9)	scaffold_7:12922861-12923181(+) (9)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os03g56500.1	expressed protein	Medtr2g037610.2	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125938.1.A1_at	A	A1TS	POPTR_0008s10910	POPTR_0008s10910 (10)	scaffold_8:6867213-6867499(+) (10)	NA	NA	NA	AT1G26180.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os02g22060.1	expressed protein	Medtr6g022930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12595.1.A1_s_at	A	A1TS	POPTR_0008s17420	POPTR_0008s17420 (11)	scaffold_8:11691831-11692391(+) (11)	NA	Q9LIR6	"Beta-amylase 1, chloroplastic"	AT3G23920.1	beta-amylase 1 	LOC_Os03g04770.1	"beta-amylase, putative, expressed"	Medtr5g013790.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.125952.1.S1_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41434054-41434413(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125952.1.S1_s_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41433090-41434282(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125954.1.S1_at	A	A1TS	POPTR_0005s11720	POPTR_0005s11720 (11)	scaffold_5:8538742-8539903(-) (11)	NA	NA	NA	AT2G17975.1	zinc finger (Ran-binding) family protein 	LOC_Os04g02000.1	"zinc finger family protein, putative, expressed"	Medtr8g090040.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.125956.1.S1_at	A	A1TS	POPTR_0018s03020	POPTR_0018s03020 (10)	scaffold_18:2695846-2696253(+) (10)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g40818.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125962.1.S1_at	A	A2TS	POPTR_0009s09800	POPTR_0009s09800 (10)//POPTR_0009s09830 (9)	scaffold_9:8574979-8575474(-) (10)//scaffold_9:8587749-8596674(-) (10)	POPTR_0009s09820 (7)	Q9MB73	Limonoid UDP-glucosyltransferase	AT4G15480.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g09510.1	"limonoid UDP-glucosyltransferase, putative, expressed"	Medtr3g067110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125977.1.S1_at	A	A1TS	POPTR_0009s04660	POPTR_0009s04660 (11)	scaffold_9:4950028-4950840(-) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT5G58940.1	calmodulin-binding receptor-like cytoplasmic kinase 1 	LOC_Os01g63280.2	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g078150.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.126009.1.S1_at	A	A1TS	POPTR_0002s22050	POPTR_0002s22050 (11)	scaffold_2:18737519-18737801(-) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.3	"OsFBX331 - F-box domain containing protein, expressed"	Medtr3g008640.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12601.1.S1_at	A	A1TS	POPTR_0006s15490	POPTR_0006s15490 (11)	scaffold_6:12901219-12901672(+) (11)	NA	NA	NA	AT2G19580.1	tetraspanin2 	LOC_Os06g37510.1	"tetraspanin family protein, putative, expressed"	Medtr4g160860.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.126031.1.S1_s_at	A	A1TS	POPTR_0006s08770	POPTR_0006s08770 (11)	scaffold_6:6454997-6456712(-) (11)	NA	Q93VV0	Probable S-acyltransferase At3g09320	AT3G09320.1	DHHC-type zinc finger family protein 	LOC_Os01g62620.1	"DHHC zinc finger domain containing protein, expressed"	Medtr1g120410.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.126034.1.S1_at	A	A1TS	POPTR_0007s10330	POPTR_0007s10330 (10)	scaffold_7:10178323-10178747(-) (11)	NA	Q9SNV9	Metal transporter Nramp3	AT2G23150.1	natural resistance-associated macrophage protein 3 	LOC_Os12g39180.1	"natural resistance-associated macrophage protein, putative, expressed"	Medtr5g016260.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.126036.1.S1_at	A	A1TS	POPTR_0001s02040	POPTR_0001s02040 (11)	scaffold_1:1537128-1537436(+) (11)	NA	Q94KU5	"Plastid lipid-associated protein 3, chloroplastic"	AT2G35490.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os10g42500.1	"PAP fibrillin family domain containing protein, expressed"	Medtr5g029500.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.12605.2.A1_at	A	A1TS	POPTR_0002s07520	POPTR_0002s07520 (11)	scaffold_2:5136434-5137959(+) (11)	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126071.1.S1_at	A	A1TS	POPTR_0011s07630	POPTR_0011s07630 (11)	scaffold_11:8466653-8466919(-) (11)	NA	P51850	Pyruvate decarboxylase isozyme 1	AT5G01320.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr2g019000.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.126071.1.S1_s_at	A	A3TS	POPTR_0004s05330	POPTR_0017s00800 (11)//POPTR_0004s05330 (11)//POPTR_0011s07630 (11)	scaffold_11:8467010-8467140(-) (11)//scaffold_17:585401-585531(-) (11)//scaffold_4:4072069-4072199(+) (11)	NA	P51850	Pyruvate decarboxylase isozyme 1	AT5G54960.1	pyruvate decarboxylase-2 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr2g019000.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.126087.1.S1_at	A	A2TS	POPTR_0006s19720	POPTR_0018s11500 (11)//POPTR_0006s19720 (11)	scaffold_18:12210949-12210983(+) (11)//scaffold_6:18756671-18756705(+) (11)	NA	Q9DBG7	Signal recognition particle receptor subunit alpha	AT4G30600.1	signal recognition particle receptor alpha subunit family protein 	LOC_Os08g37444.3	"signal recognition particle receptor, putative, expressed"	Medtr8g145240.1	"AAA ATPase; Signal recognition particle receptor, alpha subunit, N-terminal "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0005047|signal recognition particle binding||GO:0005515|protein binding	GO:0005785|signal recognition particle receptor complex||GO:0071212|subsynaptic reticulum
PtpAffx.126087.1.S1_s_at	A	A2TS	POPTR_0006s19720	POPTR_0018s11500 (11)//POPTR_0006s19720 (11)	scaffold_18:12211054-12212408(+) (11)//scaffold_6:18756776-18758263(+) (11)	NA	Q9DBG7	Signal recognition particle receptor subunit alpha	AT4G30600.1	signal recognition particle receptor alpha subunit family protein 	LOC_Os08g37444.3	"signal recognition particle receptor, putative, expressed"	Medtr8g145240.1	"AAA ATPase; Signal recognition particle receptor, alpha subunit, N-terminal "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0005047|signal recognition particle binding||GO:0005515|protein binding	GO:0005785|signal recognition particle receptor complex||GO:0071212|subsynaptic reticulum
PtpAffx.126106.1.S1_at	A	A1TS	POPTR_0007s06600	POPTR_0007s06600 (11)	scaffold_7:5015145-5016776(+) (11)	NA	Q9Y295	Developmentally-regulated GTP-binding protein 1	AT4G39520.1	GTP-binding protein-related 	LOC_Os07g43470.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.126112.1.S1_s_at	A	A1TS	POPTR_0006s25970	POPTR_0006s25970 (11)	scaffold_6:24266624-24267389(-) (11)	NA	Q9LDK9	Beta-adaptin-like protein A	AT5G11490.1	adaptin family protein 	LOC_Os01g43630.2	"adaptin, putative, expressed"	Medtr3g132640.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.126125.1.S1_s_at	A	A1TS	POPTR_0004s05630	POPTR_0004s05630 (11)	scaffold_4:4393631-4394029(+) (11)	NA	Q54WA3	Peroxisomal targeting signal 2 receptor	AT1G29260.1	peroxin 7 	LOC_Os02g14790.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126134.1.S1_s_at	A	A1TS	POPTR_0002s15050	POPTR_0002s15050 (11)	scaffold_2:11156744-11158663(+) (11)	NA	Q9FVC8	"Dihydrodipicolinate synthase 2, chloroplastic"	AT2G45440.1	dihydrodipicolinate synthase 	LOC_Os04g18200.1	"dihydrodipicolinate synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016829|lyase activity	NA
PtpAffx.126167.1.S1_at	A	A1TS	POPTR_0011s11560	POPTR_0011s11560 (11)	scaffold_11:14306655-14307458(-) (11)	NA	Q8L493	"Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic"	AT5G57850.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os01g13690.2	"ligA, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.126173.1.S1_at	A	A1TS	POPTR_0014s08890	POPTR_0014s08890 (9)	scaffold_14:6567164-6568134(+) (9)	NA	Q9M310	F-box/kelch-repeat protein At3g61590	AT3G61590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g47050.1	"OsFBK1 - F-box domain and kelch repeat containing protein, expressed"	AC233577_25.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central AC233577.5 125790-127178 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126190.1.S1_at	A	A1TS	POPTR_0015s00670	POPTR_0015s00670 (11)	scaffold_15:397789-398441(-) (11)	NA	NA	NA	AT2G02880.1	mucin-related 	LOC_Os03g26220.1	expressed protein	Medtr5g040390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1262.1.S1_a_at	A	A1TS	POPTR_0015s00970	POPTR_0015s00970 (11)	scaffold_15:566429-566482(+) (11)	NA	A2Z3C4	"Probable 6-phosphogluconolactonase 4, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1262.1.S1_at	A	A1TS	POPTR_0015s00970	POPTR_0015s00970 (11)	scaffold_15:566011-566379(+) (11)	NA	A2Z3C4	"Probable 6-phosphogluconolactonase 4, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12620.1.A1_at	A	A1TS	POPTR_0003s06090	POPTR_0003s06090 (11)	scaffold_3:7497970-7498244(-) (11)	NA	NA	NA	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr8g119830.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126213.1.S1_s_at	A	A1TS	POPTR_0019s03410	POPTR_0019s03410 (9)	scaffold_19:3461796-3462679(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126235.1.S1_at	A	A1TS	POPTR_0012s03050	POPTR_0012s03050 (10)	scaffold_12:2454718-2455024(-) (10)	NA	P33079	Auxin-induced protein 10A5	AT2G46690.1	SAUR-like auxin-responsive protein family  	LOC_Os10g36703.1	"CPuORF40 - conserved peptide uORF-containing transcript, expressed"	Medtr3g123200.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126241.1.S1_at	A	A1TS	POPTR_0010s23590	POPTR_0010s23590 (10)	scaffold_10:20126965-20127492(+) (10)	NA	NA	NA	AT5G22930.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.1	expressed protein	Medtr4g076380.1	Protein of unknown function DUF1635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12628.1.S1_at	A	A1TS	POPTR_0010s19190	POPTR_0010s19190 (11)	scaffold_10:17181361-17182843(+) (11)	NA	Q948P6	"Ferritin-3, chloroplastic"	AT3G11050.1	ferritin 2 	LOC_Os12g01530.2	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr5g090670.1	Rubrerythrin; Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
PtpAffx.1263.1.A1_a_at	A	A1TS	POPTR_0015s06950	POPTR_0015s06950 (11)	scaffold_15:7968541-7968948(+) (11)	NA	NA	NA	AT5G08050.1	Protein of unknown function (DUF1118) 	LOC_Os12g38640.1	expressed protein	Medtr3g036520.1	Protein of unknown function DUF1118 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126304.1.A1_at	A	A1TS	POPTR_0001s32970	POPTR_0001s32970 (10)	scaffold_1:31223152-31223450(-) (10)	NA	Q9SDS7	V-type proton ATPase subunit C	AT1G12840.1	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) 	LOC_Os05g51530.2	"vacuolar ATP synthase subunit C, putative, expressed"	Medtr7g096730.1	V-ATPase subunit C 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	"GO:0033180|""proton-transporting V-type ATPase, V1 domain"""
PtpAffx.126354.1.S1_s_at	A	A1TS	POPTR_0009s06580	POPTR_0009s06580 (11)	scaffold_9:6334060-6334497(+) (11)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.3	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.126359.1.S1_s_at	A	A1TS	POPTR_0010s00710	POPTR_0010s00710 (11)	scaffold_10:404241-405180(-) (11)	NA	Q0WW40	F-box/kelch-repeat protein At1g16250	AT1G16250.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126379.1.S1_at	A	A2MS	POPTR_0365s00200	POPTR_0365s00200 (11)//POPTR_0005s10250 (9)	scaffold_365:4112-4639(+) (11)//scaffold_5:7337902-7338403(-) (9)	NA	O31826	Putative acyl-CoA synthetase yngI	AT2G17650.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr8g088410.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.126394.1.S1_s_at	A	A1TS	POPTR_0004s00240	POPTR_0004s00240 (11)	scaffold_4:34695-35500(-) (11)	NA	Q9VR91	Probable E3 ubiquitin-protein ligase HERC2	AT5G60870.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os09g38755.1	"E3 ubiquitin-protein ligase HERC2, putative, expressed"	Medtr7g047420.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12640.1.A1_at	A	A1TS	POPTR_0001s36630	POPTR_0001s36630 (10)	scaffold_1:35312239-35313294(+) (10)	NA	Q5E9R3	EH domain-containing protein 1	AT3G20290.2	EPS15 homology domain 1 	LOC_Os06g47330.1	"dynamin family protein, putative, expressed"	Medtr5g101130.1	EPS15 homology (EH); Dynamin 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.126410.1.S1_s_at	A	A1TS	POPTR_0006s04770	POPTR_0006s04770 (11)	scaffold_6:3306668-3307037(+) (11)	NA	O22230	Heat stress transcription factor B-3	AT2G41690.1	heat shock transcription factor B3 	LOC_Os04g48030.1	"heat stress transcription factor B-1, putative, expressed"	Medtr7g108580.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.12643.1.S1_at	A	A1TS	POPTR_0012s03150	POPTR_0012s03150 (11)	scaffold_12:2504828-2505314(+) (11)	NA	Q84WW2	"Probable 6-phosphogluconolactonase 5, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126445.1.S1_s_at	A	A1TS	POPTR_0006s23500	POPTR_0006s23500 (11)	scaffold_6:22210921-22211468(+) (11)	NA	Q67ZE1	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2	AT2G26260.1	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 	LOC_Os03g29170.1	"sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0044237|cellular metabolic process||GO:0006694|steroid biosynthetic process	GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity||GO:0050662|coenzyme binding	GO:0005783|endoplasmic reticulum
PtpAffx.126457.1.S1_at	A	A1TS	POPTR_0015s10860	POPTR_0015s10860 (11)	scaffold_15:11646675-11647223(+) (11)	NA	NA	NA	AT3G48550.1	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g30380.1	expressed protein	Medtr8g108940.1	"ATIDD15/SGR5 ; nucleic acid binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126460.1.S1_s_at	A	A1TS	POPTR_0002s06070	POPTR_0002s06070 (11)	scaffold_2:4044659-4044963(-) (11)	NA	P08965	Meiosis protein mei2	AT1G29400.2	MEI2-like protein 5 	LOC_Os02g48790.2	"AML1, putative, expressed"	Medtr2g056620.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.126469.1.S1_at	A	A1TS	POPTR_0004s09020	POPTR_0004s09020 (11)	scaffold_4:7578841-7580017(+) (11)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126487.1.S1_at	A	A1TS	POPTR_0005s09200	POPTR_0005s09200 (11)	scaffold_5:6428639-6428820(+) (11)	NA	P32746	"Dihydroorotate dehydrogenase, mitochondrial"	AT5G23300.1	pyrimidine d 	LOC_Os04g57950.1	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr1g143810.1	Dihydroorotate dehydrogenase 2 	GO:0044281|small molecule metabolic process||GO:0006222|UMP biosynthetic process||GO:0055114|oxidation reduction	GO:0004152|dihydroorotate dehydrogenase activity	NA
PtpAffx.126487.1.S1_s_at	A	A1TS	POPTR_0005s09200	POPTR_0005s09200 (11)	scaffold_5:6428808-6430125(+) (11)	NA	P32746	"Dihydroorotate dehydrogenase, mitochondrial"	AT5G23300.1	pyrimidine d 	LOC_Os04g57950.1	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr1g143810.1	Dihydroorotate dehydrogenase 2 	GO:0044281|small molecule metabolic process||GO:0006222|UMP biosynthetic process||GO:0055114|oxidation reduction	GO:0004152|dihydroorotate dehydrogenase activity	NA
PtpAffx.126496.1.S1_at	A	A1TS	POPTR_0008s19830	POPTR_0008s19830 (11)	scaffold_8:13685436-13685508(-) (11)	NA	Q944S1	DEAD-box ATP-dependent RNA helicase 22	AT1G59990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os09g21520.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g074020.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.126496.1.S1_s_at	A	A1TS	POPTR_0008s19830	POPTR_0008s19830 (11)	scaffold_8:13684729-13685428(-) (11)	NA	Q944S1	DEAD-box ATP-dependent RNA helicase 22	AT1G59990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os09g21520.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g074020.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.126513.1.S1_s_at	A	A1TS	POPTR_0014s07680	POPTR_0014s07680 (11)	scaffold_14:5751047-5752056(+) (11)	NA	Q9LD43	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic"	AT2G38040.2	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126529.1.S1_at	A	A1TS	POPTR_0014s13180	POPTR_0014s13180 (11)	scaffold_14:9707273-9707331(+) (11)	NA	O24467	LEC14B homolog	AT4G03020.2	transducin family protein / WD-40 repeat family protein 	LOC_Os05g33710.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g111040.1	"LEC14B homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126529.1.S1_s_at	A	A1TS	POPTR_0014s13180	POPTR_0014s13180 (11)	scaffold_14:9707899-9708173(+) (11)	NA	O24467	LEC14B homolog	AT4G03020.2	transducin family protein / WD-40 repeat family protein 	LOC_Os05g33710.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g111040.1	"LEC14B homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126565.1.S1_at	A	A1TS	POPTR_0008s00480	POPTR_0008s00480 (11)	scaffold_8:193411-195824(-) (11)	NA	Q8GWH5	Reticulon-like protein B22	AT1G78895.1	Reticulon family protein 	LOC_Os08g12850.1	"pentatricopeptide, putative, expressed"	NA	NA	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.126566.1.S1_at	A	A1TS	POPTR_0002s14690	POPTR_0002s14690 (11)	scaffold_2:10915229-10915671(-) (11)	NA	NA	NA	AT2G45260.1	Plant protein of unknown function (DUF641) 	LOC_Os10g23220.2	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126599.1.A1_s_at	A	A1TS	POPTR_0004s17020	POPTR_0004s17020 (11)	scaffold_4:17370719-17371234(-) (11)	NA	Q43075	Arginine decarboxylase	AT4G34710.2	arginine decarboxylase 2 	LOC_Os06g04070.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr4g097390.1	Arginine decarboxylase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.126622.1.S1_s_at	A	A1TS	POPTR_0018s13780	POPTR_0018s13780 (11)	scaffold_18:14053328-14053711(+) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT3G23750.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr3g104610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.126626.1.S1_at	A	A1TS	POPTR_0008s09960	POPTR_0008s09960 (10)	scaffold_8:6167120-6167963(+) (10)	NA	Q0VCZ3	YTH domain family protein 2	AT1G48110.2	evolutionarily conserved C-terminal region 7 	LOC_Os03g20180.2	"ECT protein, putative, expressed"	Medtr8g134440.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126635.1.S1_at	A	A1TS	POPTR_0013s09350	POPTR_0013s09350 (11)	scaffold_13:9032036-9032455(-) (11)	NA	Q6S4P4	Transcription factor RF2b	AT2G40620.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g21800.2	"bZIP transcription factor family protein, putative, expressed"	Medtr5g083200.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.126640.1.S1_s_at	A	A1TS	POPTR_0016s06760	POPTR_0016s06760 (11)	scaffold_16:4570797-4572357(-) (11)	NA	Q9XFB0	Putative axial regulator YABBY 2	AT1G08465.1	Plant-specific transcription factor YABBY family protein 	LOC_Os07g06620.1	"YABBY domain containing protein, putative, expressed"	Medtr2g104680.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126640.2.S1_at	A	A1MS	POPTR_0016s06760	POPTR_0016s06760 (11)	scaffold_16:4573802-4574095(-) (11)	NA	Q9XFB0	Putative axial regulator YABBY 2	AT1G08465.1	Plant-specific transcription factor YABBY family protein 	LOC_Os07g06620.1	"YABBY domain containing protein, putative, expressed"	Medtr2g104680.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126646.1.S1_at	A	A1TS	POPTR_0006s15100	POPTR_0006s15100 (11)	scaffold_6:12554440-12555061(+) (11)	NA	Q9ZUP2	"DNA repair protein recA homolog 3, mitochondrial"	AT2G19490.1	recA DNA recombination family protein 	LOC_Os01g67510.1	"recA protein, putative, expressed"	Medtr2g046210.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126648.1.S1_at	A	A1TS	POPTR_0005s06520	POPTR_0005s06520 (11)	scaffold_5:4357003-4358986(-) (11)	NA	Q941D6	Histone deacetylase 14	AT4G33470.1	histone deacetylase 14 	LOC_Os12g08220.1	"histone deacetylase, putative, expressed"	Medtr4g142920.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126653.1.S1_s_at	A	A1TS	POPTR_0010s26210	POPTR_0010s26210 (11)	scaffold_10:21528980-21529416(-) (11)	POPTR_0008s00270 (6)	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.126669.1.S1_at	A	A1TS	POPTR_0016s14420	POPTR_0016s14420 (11)	scaffold_16:13634637-13635454(+) (11)	NA	NA	NA	AT2G38550.1	Transmembrane proteins 14C 	LOC_Os01g60650.1	"non-green plastid inner envelope membrane protein, putative, expressed"	Medtr7g080440.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
PtpAffx.126679.1.S1_at	A	A1TS	POPTR_0007s14410	POPTR_0007s14410 (9)	scaffold_7:14194780-14196548(-) (10)	NA	B0XN12	"Probable glucan 1,3-beta-glucosidase A"	NA	NA	LOC_Os08g37750.1	"cellulase, putative, expressed"	Medtr3g102270.1	"Glycoside hydrolase, family 5; Actin-crosslinking proteins "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12669.1.S1_at	A	A2TS	POPTR_0016s02710	POPTR_0016s02710 (9)//POPTR_1436s00200 (9)	scaffold_1436:2635-3094(+) (9)//scaffold_16:1344481-1345060(+) (9)//scaffold_16:1366271-1366855(+) (9)	POPTR_0016s02730 (7)//POPTR_0016s02680 (7)	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os01g58830.1	"transposon protein, putative, unclassified"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.126703.1.S1_at	A	A1TS	POPTR_0005s21650	POPTR_0005s21650 (10)	scaffold_5:20756747-20759062(-) (10)	NA	Q99JH1	Alba-like protein C9orf23 homolog	AT1G76010.1	Alba DNA/RNA-binding protein 	LOC_Os09g37006.2	"protein of unknown function domain containing protein, expressed"	Medtr3g144390.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.126703.1.S1_s_at	A	A2TS	POPTR_0002s06670	POPTR_0002s06670 (11)//POPTR_0005s21650 (11)	scaffold_2:4485165-4486415(+) (10)//scaffold_5:20757534-20759003(-) (11)	NA	Q99JH1	Alba-like protein C9orf23 homolog	AT1G76010.1	Alba DNA/RNA-binding protein 	LOC_Os09g37006.2	"protein of unknown function domain containing protein, expressed"	Medtr3g144390.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.126720.1.S1_s_at	A	A2TS	POPTR_0002s07820	POPTR_0002s07820 (11)//POPTR_0005s20540 (11)	scaffold_2:5366579-5367277(-) (11)//scaffold_5:19595169-19595828(+) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT1G77280.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os11g08950.1	"protein kinase family protein, putative, expressed"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.126732.1.S1_at	A	A1TS	POPTR_0002s10420	POPTR_0002s10420 (11)	scaffold_2:7508360-7508893(+) (11)	NA	B2J5F1	Glucose-6-phosphate isomerase	AT4G24620.1	phosphoglucose isomerase 1 	LOC_Os09g29070.1	"glucose-6-phosphate isomerase, putative, expressed"	Medtr5g074950.1	Phosphoglucose isomerase (PGI) 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006096|glycolysis||GO:0006094|gluconeogenesis	GO:0004347|glucose-6-phosphate isomerase activity	NA
PtpAffx.12675.2.A1_a_at	A	A1TS	POPTR_0007s00260	POPTR_0007s00260 (11)	scaffold_7:54599-54726(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.2.A1_at	A	A1TS	POPTR_0007s00260	POPTR_0007s00260 (11)	scaffold_7:54536-55005(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.3.A1_a_at	A	A1TS	POPTR_0015s04140	POPTR_0015s04140 (11)	scaffold_15:4166076-4166189(+) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.3.A1_s_at	A	A1TS	POPTR_0015s04140	POPTR_0015s04140 (11)	scaffold_15:4165669-4165873(+) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.4.A1_s_at	A	A1TS	POPTR_0006s12450	POPTR_0006s12450 (11)	scaffold_6:9597551-9598253(-) (11)	NA	NA	NA	AT5G03460.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g57766.1	expressed protein	Medtr7g123980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.9.A1_a_at	A	A1TS	POPTR_0004s19900	POPTR_0004s19900 (11)	scaffold_4:19564866-19565178(+) (11)	NA	Q9FK81	Uncharacterized protein At5g22580	AT5G22580.1	Stress responsive A/B Barrel Domain 	LOC_Os11g05290.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12676.1.S1_at	A	A1TS	POPTR_0006s18790	POPTR_0006s18790 (10)	scaffold_6:17450665-17451110(-) (10)	NA	NA	NA	AT5G57685.1	glutamine dumper 3 	LOC_Os08g34700.1	"GDU1, putative, expressed"	Medtr8g128110.1	"ATGDU4 {Arabidopsis, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12677.2.A1_at	A	A2TS	POPTR_0005s22200	POPTR_0005s22200 (11)//POPTR_0005s22210 (11)	scaffold_5:21165830-21165871(+) (11)//scaffold_5:21183369-21183410(+) (11)	NA	Q9SZ83	Uncharacterized oxidoreductase At4g09670	AT4G09670.1	Oxidoreductase family protein 	LOC_Os10g26400.2	"uncharacterized oxidoreductase, putative, expressed"	Medtr3g087060.1	"Oxidoreductase, N-terminal "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.126778.1.A1_at	A	A1TS	POPTR_0001s16210	POPTR_0001s16210 (11)	scaffold_1:13027907-13028414(+) (11)	NA	Q9XF63	RING-H2 finger protein ATL3	AT1G72310.1	RING/U-box superfamily protein 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126781.1.S1_at	A	A1TS	POPTR_0006s24150	POPTR_0006s24150 (11)	scaffold_6:22819353-22820793(-) (11)	NA	Q5NVK5	Geranylgeranyl transferase type-2 subunit alpha	AT4G24490.2	RAB geranylgeranyl transferase alpha subunit 1 	LOC_Os06g46380.1	"rab geranylgeranyl transferase like protein, putative, expressed"	Medtr3g149650.1	Protein prenyltransferase 	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity||GO:0005515|protein binding	NA
PtpAffx.126781.1.S1_s_at	A	A1TS	POPTR_0006s24150	POPTR_0006s24150 (11)	scaffold_6:22818660-22819332(-) (11)	NA	Q5NVK5	Geranylgeranyl transferase type-2 subunit alpha	AT4G24490.2	RAB geranylgeranyl transferase alpha subunit 1 	LOC_Os06g46380.1	"rab geranylgeranyl transferase like protein, putative, expressed"	Medtr3g149650.1	Protein prenyltransferase 	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity||GO:0005515|protein binding	NA
PtpAffx.12680.1.S1_at	A	A1TS	POPTR_0004s16660	POPTR_0004s16660 (10)	scaffold_4:17055558-17056070(-) (10)	NA	O65685	BEL1-like homeodomain protein 6	AT4G34610.2	BEL1-like homeodomain 6 	LOC_Os12g43950.4	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.126807.1.S1_at	A	A1TS	POPTR_0005s20890	POPTR_0005s20890 (11)	scaffold_5:20020901-20021138(+) (11)	NA	Q9SDQ3	Scarecrow-like protein 1	AT1G21450.1	SCARECROW-like 1 	LOC_Os01g65900.1	"chitin-inducible gibberellin-responsive protein, putative, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12684.1.S1_at	A	A1TS	POPTR_0004s00550	POPTR_0004s00550 (11)	scaffold_4:203233-203691(+) (11)	NA	Q41141	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta	AT1G12000.1	Phosphofructokinase family protein 	LOC_Os06g13810.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed"	Medtr8g147360.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126845.1.A1_at	A	A1TS	POPTR_0005s05080	POPTR_0005s05080 (10)	scaffold_5:3378201-3378638(-) (10)	NA	P73068	Rubredoxin	AT1G54500.1	Rubredoxin-like superfamily protein 	LOC_Os08g23410.1	"rubredoxin family protein, putative, expressed"	Medtr7g140460.1	Rubredoxin 	NA	GO:0046872|metal ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.126848.1.A1_s_at	A	A1TS	POPTR_0005s19290	POPTR_0005s19290 (11)	scaffold_5:18011448-18012712(-) (11)	NA	Q9FJX0	Peptidyl-prolyl cis-trans isomerase-like 2	AT5G67530.1	plant U-box 49 	LOC_Os03g10400.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.126854.1.A1_at	A	A1MS	POPTR_0008s13160	POPTR_0008s13160 (11)	scaffold_8:8606605-8607123(+) (11)	NA	O65472	Putative cysteine-rich receptor-like protein kinase 12	AT1G70740.1	Protein kinase superfamily protein 	LOC_Os09g24330.1	"TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr1g035090.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.126891.1.A1_at	A	A1TS	POPTR_0002s13200	POPTR_0002s13200 (11)	scaffold_2:9830568-9831087(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1269.1.A1_a_at	A	A1TS	POPTR_0013s05790	POPTR_0013s05790 (11)	scaffold_13:4176747-4176852(-) (11)	NA	O64654	"Thioredoxin-like 1-1, chloroplastic"	AT1G08570.1	atypical CYS  HIS rich thioredoxin 4 	LOC_Os03g21000.1	"thioredoxin, putative, expressed"	Medtr7g100190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.1269.1.A1_x_at	A	A1TS	POPTR_0013s05790	POPTR_0013s05790 (11)	scaffold_13:4176673-4177116(-) (11)	NA	O64654	"Thioredoxin-like 1-1, chloroplastic"	AT1G08570.1	atypical CYS  HIS rich thioredoxin 4 	LOC_Os03g21000.1	"thioredoxin, putative, expressed"	Medtr7g100190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.1269.2.S1_at	A	A1TS	POPTR_0014s07470	POPTR_0014s07470 (11)	scaffold_14:5622248-5622596(-) (11)	NA	Q58FX0	BON1-associated protein 2	AT2G45760.1	BON association protein 2 	LOC_Os09g35780.1	"BAP2, putative, expressed"	Medtr7g083600.1	"C2 calcium/lipid-binding region, CaLB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1269.3.S1_at	A	A1TS	POPTR_0002s15670	POPTR_0002s15670 (11)	scaffold_2:11710203-11710695(-) (11)	NA	Q58FX0	BON1-associated protein 2	AT2G45760.1	BON association protein 2 	LOC_Os09g35780.1	"BAP2, putative, expressed"	Medtr7g083600.1	"C2 calcium/lipid-binding region, CaLB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126919.1.A1_at	A	A1TS	POPTR_0002s24080	POPTR_0002s24080 (9)	scaffold_2:21529047-21529079(-) (9)	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT3G25480.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g66600.2	"rhodanese-like, putative, expressed"	Medtr7g092420.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126919.1.A1_s_at	A	A1TS	POPTR_0002s24080	POPTR_0002s24080 (11)	scaffold_2:21528759-21529222(-) (11)	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT3G25480.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g66600.2	"rhodanese-like, putative, expressed"	Medtr7g092420.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126945.1.A1_s_at	A	A1TS	POPTR_0016s06000	POPTR_0016s06000 (11)	scaffold_16:3924131-3924377(-) (11)	NA	Q39147	DNA-3-methyladenine glycosylase	AT3G12040.1	DNA-3-methyladenine glycosylase (MAG) 	LOC_Os02g53430.1	"DNA-3-methyladenine glycosylase, putative, expressed"	Medtr7g112240.1	Methylpurine-DNA glycosylase (MPG) 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003905|alkylbase DNA N-glycosylase activity	NA
PtpAffx.126947.1.A1_at	A	A1MS	POPTR_0001s35060	POPTR_0001s35060 (9)	scaffold_1:33331656-33332152(-) (9)	NA	Q9FNE1	Cysteine-rich receptor-like protein kinase 42	AT5G40380.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 42 	LOC_Os01g36790.1	"TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g035020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.126959.1.A1_at	A	A1TS	POPTR_0005s07570	POPTR_0005s07570 (11)	scaffold_5:5165270-5165730(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12697.1.S1_at	A	A1TS	POPTR_0002s24620	POPTR_0002s24620 (9)	scaffold_2:21942797-21944458(+) (9)	NA	NA	NA	AT3G07170.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g30910.2	"SAM domain family protein, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126994.1.A1_at	A	A1TS	POPTR_0002s20790	POPTR_0002s20790 (11)	scaffold_2:16911767-16912192(+) (11)	NA	O82243	Putative indole-3-acetic acid-amido synthetase GH3.9	AT2G47750.1	putative indole-3-acetic acid-amido synthetase GH3.9 	LOC_Os07g47490.2	"OsGH3.11 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126996.1.A1_at	A	A1TS	POPTR_0009s08460	POPTR_0009s08460 (11)	scaffold_9:7743648-7744547(+) (11)	NA	A8WGF7	Protein spinster homolog 1	AT5G64500.1	Major facilitator superfamily protein 	LOC_Os04g44430.1	"transporter, major facilitator family, putative, expressed"	Medtr4g121900.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1270.1.A1_s_at	A	A2TS	POPTR_0019s03110	POPTR_0078s00210 (11)//POPTR_0019s03110 (11)	scaffold_19:3122731-3123165(-) (11)//scaffold_78:31711-32145(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr5g017690.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.127010.1.A1_a_at	A	A1TS	POPTR_0004s07070	POPTR_0004s07070 (11)	scaffold_4:5881388-5881785(+) (11)	NA	Q8VHE0	Translocation protein SEC63 homolog	AT1G79940.3	DnaJ / Sec63 Brl domains-containing protein 	LOC_Os04g24180.2	"heat shock protein binding protein, putative, expressed"	Medtr2g052130.1	"Heat shock protein DnaJ, N-terminal; Sec63 "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.127029.2.A1_s_at	A	A2TS	POPTR_0012s09890	POPTR_0012s09890 (11)//POPTR_0015s10670 (11)	scaffold_12:10784658-10784935(-) (11)//scaffold_15:11530659-11530890(-) (11)	NA	NA	NA	AT5G63460.1	SAP domain-containing protein 	LOC_Os12g25640.1	"SAP domain containing protein, expressed"	Medtr8g109290.1	DNA-binding SAP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.127029.3.A1_a_at	A	A1TS	POPTR_0012s09890	POPTR_0012s09890 (11)	scaffold_12:10783931-10785336(-) (11)	NA	NA	NA	AT5G63460.1	SAP domain-containing protein 	LOC_Os12g25640.1	"SAP domain containing protein, expressed"	Medtr8g109290.1	DNA-binding SAP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.127044.1.A1_at	A	A1TS	POPTR_0009s15050	POPTR_0009s15050 (11)	scaffold_9:11666252-11666694(-) (11)	NA	NA	NA	AT2G27770.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr4g073260.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127056.1.A1_at	A	A1TS	POPTR_0008s13460	POPTR_0008s13460 (11)	scaffold_8:8860475-8860602(-) (11)	NA	Q9C9W9	Adagio protein 3	AT1G68050.1	"flavin-binding, kelch repeat, f box 1 "	LOC_Os11g34460.1	"OsFBO10 - F-box and other domain containing protein, expressed"	Medtr4g156890.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127059.1.A1_at	A	A1TS	POPTR_0001s05280	POPTR_0001s05280 (11)	scaffold_1:4054006-4054211(+) (11)	NA	Q5Z9Z0	Beta-glucosidase 24	AT5G44640.1	beta glucosidase 13 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr8g146400.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.127060.1.A1_a_at	A	A1TS	POPTR_0004s06730	POPTR_0004s06730 (11)	scaffold_4:5386843-5386952(+) (11)	NA	NA	NA	AT1G73210.1	Protein of unknown function (DUF789) 	LOC_Os06g51330.1	expressed protein	Medtr6g089670.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127060.1.A1_at	A	A1TS	POPTR_0004s06730	POPTR_0004s06730 (11)	scaffold_4:5386540-5386716(+) (11)	NA	NA	NA	AT1G73210.1	Protein of unknown function (DUF789) 	LOC_Os06g51330.1	expressed protein	Medtr6g089670.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12708.1.A1_at	A	A1TS	POPTR_0014s11350	POPTR_0014s11350 (10)	scaffold_14:8445561-8445937(-) (10)	NA	O22900	Probable WRKY transcription factor 23	AT2G47260.1	WRKY DNA-binding protein 23 	LOC_Os07g02060.1	"OsWRKY29 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g106500.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.127094.1.A1_at	A	A1TS	POPTR_0001s25830	POPTR_0001s25830 (11)	scaffold_1:24906433-24906987(-) (11)	NA	Q39253	Vacuolar cation/proton exchanger 1	AT2G38170.1	cation exchanger 1 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr5g078800.1	Calcium/proton exchanger superfamily 	NA	NA	GO:0016021|integral to membrane
PtpAffx.127096.1.A1_at	A	A1TS	POPTR_0009s15270	POPTR_0009s15270 (11)	scaffold_9:11853639-11854077(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT3G44820.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	AC157372_1.1	BTB/POZ; NPH3 AC157372.2 9592-12375 E EGN_Mt090430 200	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.127102.1.A1_at	A	A1TS	POPTR_0017s03030	POPTR_0017s03030 (11)	scaffold_17:2194781-2194955(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127102.1.A1_s_at	A	A1TS	POPTR_0017s03030	POPTR_0017s03030 (11)	scaffold_17:2194619-2194784(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127113.1.A1_at	A	A1TS	POPTR_0018s11760	POPTR_0018s11760 (10)	scaffold_18:12410872-12411205(+) (10)	NA	Q00IB6	RNA polymerase II C-terminal domain phosphatase-like 4	AT5G58003.1	C-terminal domain phosphatase-like 4 	LOC_Os05g32430.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g055870.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.12712.1.S1_at	A	A1TS	POPTR_0006s09080	POPTR_0006s09080 (11)	scaffold_6:6706249-6707789(+) (11)	NA	P50165	Tropinone reductase homolog	AT2G29150.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr8g147520.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.127135.1.A1_at	A	A1TS	POPTR_0008s13520	POPTR_0008s13520 (11)	scaffold_8:8901031-8901267(+) (11)	NA	Q0DXS3	Probable RNA-dependent RNA polymerase 1	AT1G14790.1	RNA-dependent RNA polymerase 1 	LOC_Os02g50330.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125360.1	RNA-binding region RNP-1 (RNA recognition motif); RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127139.1.S1_at	A	A1TS	POPTR_0015s12030	POPTR_0015s12030 (10)	scaffold_15:12469817-12469899(+) (10)	NA	Q8BMD8	Calcium-binding mitochondrial carrier protein SCaMC-1	AT5G51050.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40200.2	"calcium-binding mitochondrial carrier CBG00135, putative, expressed"	Medtr3g151470.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127139.1.S1_s_at	A	A1TS	POPTR_0015s12030	POPTR_0015s12030 (11)	scaffold_15:12469431-12469692(+) (11)	NA	Q8BMD8	Calcium-binding mitochondrial carrier protein SCaMC-1	AT5G51050.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40200.2	"calcium-binding mitochondrial carrier CBG00135, putative, expressed"	Medtr3g151470.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127146.1.A1_at	A	A1TS	POPTR_0001s44020	POPTR_0001s44020 (11)	scaffold_1:44493783-44494285(+) (11)	NA	NA	NA	AT5G54540.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os08g08190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12715.1.A1_at	A	A1TS	POPTR_0017s07520	POPTR_0017s07520 (11)	scaffold_17:5855259-5856056(+) (11)	NA	Q9FY69	Transcription factor bHLH143	AT5G09460.1	sequence-specific DNA binding transcription factors;transcription regulators 	LOC_Os03g27390.2	"CPuORF35 - conserved peptide uORF-containing transcript, expressed"	Medtr2g009410.1	"transcription factor/ transcription regulator, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127154.1.S1_at	A	A1TS	POPTR_0001s34510	POPTR_0001s34510 (11)	scaffold_1:32629049-32629401(+) (11)	NA	Q9SVV6	Probable calcium-activated outward-rectifying potassium channel 6	AT4G18160.1	Ca2+ activated outward rectifying K+ channel 6 	LOC_Os09g12790.1	"potassium channel protein, putative, expressed"	Medtr7g134030.1	Ion transport 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127155.1.A1_s_at	A	A1TS	POPTR_0010s10440	POPTR_0010s10440 (11)	scaffold_10:10947187-10947310(-) (11)	NA	Q8W4I4	Potassium transporter 6	AT1G70300.1	K+ uptake permease 6 	LOC_Os06g42030.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.127197.1.A1_at	A	A1TS	POPTR_0003s21680	POPTR_0003s21680 (11)	scaffold_3:19734260-19734588(-) (11)	NA	NA	NA	AT5G19900.1	"PRLI-interacting factor, putative "	LOC_Os02g58570.1	"PRLI-interacting factor A, putative, expressed"	Medtr1g146630.1	"PRLI-interacting factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127210.1.A1_at	A	A1TS	POPTR_0018s11670	POPTR_0018s11670 (11)	scaffold_18:12316287-12316799(-) (11)	POPTR_0006s19880 (6)	C0LGK9	Probable LRR receptor-like serine/threonine-protein kinase At2g24230	AT2G24230.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g17410.1	"BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed"	Medtr8g145450.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.127230.1.A1_at	A	A1TS	POPTR_0008s05240	POPTR_0008s05240 (10)	scaffold_8:3031808-3032879(-) (10)	NA	O95163	Elongator complex protein 1	AT5G13680.1	IKI3 family protein 	LOC_Os07g37640.1	"IKI3 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127241.1.A1_at	A	A1TS	POPTR_0019s10120	POPTR_0019s10120 (10)	scaffold_19:11697647-11698137(-) (10)	NA	Q6NZC7	SEC23-interacting protein	AT1G31480.1	shoot gravitropism 2 (SGR2) 	LOC_Os08g01920.1	"SGR2, putative, expressed"	Medtr5g087840.1	"SGR2, putative "	NA	GO:0046872|metal ion binding	NA
PtpAffx.127246.1.A1_at	A	A1TA	POPTR_0013s07640	POPTR_0013s07640 (10)	scaffold_13:6469919-6471842(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127248.1.A1_at	A	A1MS	POPTR_0006s25530	POPTR_0006s25530 (11)	scaffold_6:23925450-23925669(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G25820.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	Medtr4g159530.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.127252.1.A1_at	A	A1TS	POPTR_0012s04870	POPTR_0012s04870 (9)	scaffold_12:4288247-4288513(+) (9)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT3G18210.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.12726.1.S1_at	A	A1TS	POPTR_0006s24820	POPTR_0006s24820 (11)	scaffold_6:23351281-23351954(-) (11)	NA	P42044	"Ferrochelatase-2, chloroplastic"	AT5G26030.2	ferrochelatase 1 	LOC_Os09g12560.2	"ferrochelatase-2, chloroplast precursor, putative, expressed"	Medtr3g140120.1	Ferrochelatase 	GO:0006783|heme biosynthetic process	GO:0004325|ferrochelatase activity	NA
PtpAffx.127276.1.A1_at	A	A1TS	POPTR_0013s05320	POPTR_0013s05320 (11)	scaffold_13:3810329-3810699(+) (11)	NA	O00410	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os07g38760.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.127286.2.A1_at	A	A1TS	POPTR_0010s16470	POPTR_0010s16470 (9)	scaffold_10:15415331-15415692(-) (9)	NA	Q9LMX8	Probable 6-phosphogluconolactonase 1	AT1G13700.1	6-phosphogluconolactonase 1 	LOC_Os07g41280.3	"6-phosphogluconolactonase, putative, expressed"	Medtr5g047620.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127289.1.A1_at	A	A1TS	POPTR_0006s22560	POPTR_0006s22560 (10)	scaffold_6:21541079-21541585(+) (10)	NA	Q9LPV9	WD repeat-containing protein LWD1	AT1G12910.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g32430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g099620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1273.1.S1_at	A	A1TS	POPTR_0007s10140	POPTR_0007s10140 (11)	scaffold_7:9863906-9865812(+) (11)	NA	P51273	Uncharacterized protein ycf36	AT5G67370.1	Protein of unknown function (DUF1230) 	LOC_Os03g32490.1	"DUF1230 domain containing protein, expressed"	Medtr5g016100.1	Protein of unknown function DUF1230 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1273.2.A1_at	A	A1MA	POPTR_0007s10140	POPTR_0007s10140 (11)	scaffold_7:9865336-9865872(-) (11)	NA	P51273	Uncharacterized protein ycf36	AT5G67370.1	Protein of unknown function (DUF1230) 	LOC_Os03g32490.1	"DUF1230 domain containing protein, expressed"	Medtr5g016100.1	Protein of unknown function DUF1230 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12730.1.S1_at	A	A1TS	POPTR_0005s07450	POPTR_0005s07450 (9)	scaffold_5:5092845-5093166(-) (9)	NA	P29976	"Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic"	AT4G39980.1	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 	LOC_Os03g27230.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003849|3-deoxy-7-phosphoheptulonate synthase activity	NA
PtpAffx.127300.1.A1_at	A	A1TS	POPTR_0001s10060	POPTR_0001s10060 (11)	scaffold_1:7787052-7787405(-) (11)	NA	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.127303.1.A1_at	A	A1TS	POPTR_0007s09490	POPTR_0007s09490 (11)	scaffold_7:8886882-8887138(-) (11)	NA	O22567	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT4G15560.1	Deoxyxylulose-5-phosphate synthase 	LOC_Os07g09190.1	"transketolase, putative, expressed"	Medtr8g079280.1	"Transketolase, C-terminal-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.127311.1.A1_at	A	A1TS	POPTR_0019s07160	POPTR_0019s07160 (11)	scaffold_19:7885428-7885818(-) (11)	NA	Q84Y01	Inositol-tetrakisphosphate 1-kinase 1	AT5G16760.1	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os10g42550.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.127327.1.A1_s_at	A	A1TS	POPTR_0010s24570	POPTR_0010s24570 (11)	scaffold_10:20720856-20721483(-) (11)	NA	NA	NA	AT4G18590.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g14980.2	"RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed"	Medtr7g127630.1	Replication factor A protein 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12733.1.S1_at	A	A1TS	POPTR_0010s07030	POPTR_0010s07030 (11)	scaffold_10:8269412-8270975(-) (11)	NA	Q7Z2K6	Endoplasmic reticulum metallopeptidase 1	AT1G67420.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os07g19530.1	"peptidase, putative, expressed"	Medtr1g120840.1	ArgE/dapE/ACY1/CPG2/yscS; Peptidase M28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.127335.1.A1_at	A	A1MS	POPTR_0014s10550	POPTR_0014s10550 (10)	scaffold_14:7858967-7859289(+) (10)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127337.1.A1_at	A	A1MS	POPTR_0005s08630	POPTR_0005s08630 (9)	scaffold_5:5995862-5996061(-) (9)	NA	NA	NA	AT2G21960.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 	LOC_Os04g54640.1	"peptidase, cysteine peptidase active site, putative, expressed"	Medtr2g077520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127346.1.A1_at	A	A1TS	POPTR_0009s08360	POPTR_0009s08360 (9)	scaffold_9:7677014-7677721(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127355.1.A1_at	A	A1TS	POPTR_0016s12300	POPTR_0016s12300 (9)	scaffold_16:11643959-11644248(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127364.1.A1_s_at	A	A1TS	POPTR_0007s09500	POPTR_0007s09500 (11)	scaffold_7:8896440-8896979(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr5g032910.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.127364.3.A1_a_at	A	A1TS	POPTR_0005s19120	POPTR_0005s19120 (11)	scaffold_5:17726536-17728362(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr5g032910.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.12738.2.S1_a_at	A	A1TS	POPTR_0013s09990	POPTR_0013s09990 (11)	scaffold_13:9967731-9968761(-) (11)	NA	P54120	Protein AIG1	AT1G33970.5	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g35130.2	"AIG1, putative, expressed"	Medtr4g033020.1	AIG1 	NA	GO:0005525|GTP binding	NA
PtpAffx.127398.1.A1_at	A	A1TS	POPTR_0008s05110	POPTR_0008s05110 (11)	scaffold_8:2965543-2965785(+) (11)	NA	NA	NA	AT2G28710.1	C2H2-type zinc finger family protein 	LOC_Os03g17150.1	"ZOS3-09 - C2H2 zinc finger protein, expressed"	Medtr7g024970.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.12741.1.A1_a_at	A	A1TS	POPTR_0005s15960	POPTR_0005s15960 (11)	scaffold_5:12620048-12621783(+) (11)	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12741.1.A1_at	A	A1TS	POPTR_0005s15960	POPTR_0005s15960 (11)	scaffold_5:12621612-12621743(+) (11)	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127421.1.A1_at	A	A1TS	POPTR_0005s26280	POPTR_0005s26280 (11)	scaffold_5:24347323-24348703(+) (11)	NA	Q9ZRZ8	DEAD-box ATP-dependent RNA helicase 28	AT4G16630.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os12g29660.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g067120.1	"Helicase, C-terminal "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.127423.1.A1_at	A	A1TS	POPTR_0001s13620	POPTR_0001s13620 (11)	scaffold_1:10681762-10682161(+) (11)	NA	NA	NA	AT1G24265.2	Protein of unknown function (DUF1664) 	LOC_Os01g01070.2	expressed protein	Medtr7g022170.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127428.1.A1_at	A	A1MS	POPTR_0003s09900	POPTR_0003s09900 (11)	scaffold_3:11067421-11069116(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G32090.1	early-responsive to dehydration stress protein (ERD4) 	LOC_Os10g42820.1	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g027680.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.127432.1.A1_at	A	A1TS	POPTR_0008s07900	POPTR_0008s07900 (10)	scaffold_8:4859261-4859335(-) (10)	NA	Q7XUK4	Endoglucanase 12	AT1G65610.1	Six-hairpin glycosidases superfamily protein 	LOC_Os04g41970.1	"endoglucanase, putative, expressed"	Medtr3g106800.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.127433.1.A1_at	A	A1TS	POPTR_0016s03280	POPTR_0016s03280 (11)	scaffold_16:1677937-1678475(-) (11)	NA	P25011	G2/mitotic-specific cyclin S13-6	AT5G06150.1	Cyclin family protein 	LOC_Os05g41390.1	"cyclin, putative, expressed"	Medtr7g106110.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.127435.1.A1_at	A	A1TS	POPTR_0015s12720	POPTR_0015s12720 (11)	scaffold_15:12953269-12953517(-) (11)	NA	NA	NA	AT5G36970.1	NDR1/HIN1-like 25 	LOC_Os04g58090.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g084030.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.127438.1.A1_at	A	A1TS	POPTR_0007s04340	POPTR_0007s04340 (9)	scaffold_7:2656169-2657451(+) (11)	NA	Q8L7V3	Probable methyltransferase PMT26	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.127443.1.A1_at	A	A1TS	POPTR_0006s03700	POPTR_0006s03700 (11)	scaffold_6:2464075-2464442(+) (11)	NA	P47082	Vacuolar amino acid transporter 1	AT2G41190.1	Transmembrane amino acid transporter family protein 	LOC_Os02g54730.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g106930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127447.1.S1_at	A	A1TS	POPTR_0007s12540	POPTR_0007s12540 (11)	scaffold_7:12835436-12835798(+) (11)	NA	Q9NVU0	DNA-directed RNA polymerase III subunit RPC5	AT5G49530.1	SIN-like family protein 	LOC_Os08g16780.1	"sin-like protein conserved region containing protein, expressed"	Medtr5g026170.1	Sin-like protein conserved region 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.12745.2.A1_at	A	A1TS	POPTR_0007s15080	POPTR_0007s15080 (11)	scaffold_7:14723067-14723309(-) (11)	NA	NA	NA	AT1G16720.1	high chlorophyll fluorescence phenotype 173 	LOC_Os06g49120.1	"Complex I intermediate-associated protein 30 domain containing protein, putative, expressed"	Medtr4g163250.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127452.1.A1_at	A	A1TS	POPTR_0018s02830	POPTR_0018s02830 (11)	scaffold_18:2496949-2497047(-) (11)	NA	NA	NA	AT2G24970.1	unknown protein; Has 33 Blast hits to 33 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os01g56090.1	expressed protein	Medtr1g016540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127478.1.A1_at	A	A1TS	POPTR_0017s09140	POPTR_0017s09140 (10)	scaffold_17:7806768-7806980(+) (10)	POPTR_0017s09160 (7)	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os07g36590.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.127481.1.A1_at	A	A1TS	POPTR_0008s22650	POPTR_0008s22650 (11)	scaffold_8:17310918-17311212(+) (11)	NA	NA	NA	AT5G18540.1	unknown protein; Has 2026 Blast hits to 792 proteins in 129 species: Archae - 2; Bacteria - 12; Metazoa - 1126; Fungi - 267; Plants - 292; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink). 	LOC_Os07g47340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127488.1.A1_at	A	A1MS	POPTR_0011s14840	POPTR_0011s14840 (11)	scaffold_11:17095093-17095280(+) (11)	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.127492.1.A1_at	A	A1MS	POPTR_0014s11660	POPTR_0014s11660 (9)	scaffold_14:8638093-8638676(+) (9)	POPTR_0014s11690 (7)//POPTR_0008s19530 (6)	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.2	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.127492.1.A1_s_at	A	A2TS	POPTR_0008s19530	POPTR_0014s11690 (11)//POPTR_0008s19530 (11)	scaffold_14:8668366-8668767(+) (11)//scaffold_8:13458217-13458619(+) (11)	NA	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.1	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.127497.1.A1_at	A	A1TS	POPTR_0012s07090	POPTR_0012s07090 (10)	scaffold_12:7779640-7779813(+) (10)	NA	P53997	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.12750.1.A1_s_at	A	A1TS	POPTR_0006s15580	POPTR_0006s15580 (11)	scaffold_6:13019572-13019911(-) (11)	NA	Q9SU79	Probable polyamine oxidase 5	AT4G29720.1	polyamine oxidase 5 	LOC_Os01g51320.1	"peroxisomal N-acetyl-spermine/spermidine oxidase precursor, putative, expressed"	Medtr2g045700.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.127504.1.A1_at	A	A1TS	POPTR_0006s02520	POPTR_0006s02520 (10)	scaffold_6:1641959-1642650(+) (10)	NA	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.127516.1.A1_at	A	A1TS	POPTR_0018s03620	POPTR_0018s03620 (11)	scaffold_18:3113729-3113866(+) (11)	NA	NA	NA	AT5G57510.1	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g128630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127518.1.A1_at	A	A1TS	POPTR_0001s02450	POPTR_0001s02450 (9)	scaffold_1:1901440-1901500(+) (9)	NA	Q39204	Transcription factor MYC2	AT1G32640.1	Basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.127519.1.A1_at	A	A1MS	POPTR_0002s17390	POPTR_0002s17390 (11)	scaffold_2:13149433-13149656(-) (11)	NA	NA	NA	AT2G46550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g30930.1	expressed protein	Medtr3g123640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127520.1.A1_at	A	A1TS	POPTR_0006s01820	POPTR_0006s01820 (11)	scaffold_6:1093317-1093918(-) (11)	NA	NA	NA	AT4G17240.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). 	LOC_Os05g46920.1	expressed protein	Medtr2g030560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127522.1.A1_at	A	A1TS	POPTR_0001s46860	POPTR_0001s46860 (11)	scaffold_1:47229939-47230052(-) (11)	NA	NA	NA	AT4G20880.1	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) 	NA	NA	AC147501_24.1	"Putative transcription factor, AC147501.9 100411-98848 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127522.1.A1_s_at	A	A1TS	POPTR_0001s46860	POPTR_0001s46860 (11)	scaffold_1:47229807-47229948(-) (11)	POPTR_0011s16510 (7)	NA	NA	AT4G20880.1	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) 	NA	NA	AC147501_24.1	"Putative transcription factor, AC147501.9 100411-98848 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127528.1.A1_at	A	A1TS	POPTR_0005s05000	POPTR_0005s05000 (11)	scaffold_5:3332153-3333125(-) (11)	NA	O23733	Cysteine synthase	AT3G04940.1	cysteine synthase D1 	LOC_Os03g53650.3	"cysteine synthase, putative, expressed"	Medtr1g096600.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.127528.1.A1_s_at	A	A1TS	POPTR_0005s05000	POPTR_0005s05000 (11)	scaffold_5:3332235-3333358(-) (11)	NA	O23733	Cysteine synthase	AT3G04940.1	cysteine synthase D1 	LOC_Os03g53650.3	"cysteine synthase, putative, expressed"	Medtr1g096600.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.127541.1.A1_at	A	A1TS	POPTR_0001s33290	POPTR_0001s33290 (11)	scaffold_1:31476902-31477440(-) (11)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os09g33450.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.127543.1.A1_at	A	A1MA	POPTR_0003s17180	POPTR_0003s17180 (11)	scaffold_3:16619440-16619970(-) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127545.1.A1_s_at	A	A1TS	POPTR_0006s21080	POPTR_0006s21080 (11)	scaffold_6:20183622-20184186(+) (11)	NA	P48578	Serine/threonine-protein phosphatase PP2A-3 catalytic subunit	AT3G58500.1	protein phosphatase 2A-4 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	AC235488_34.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase AC235488.1 160871-167050 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.127545.2.A1_at	A	A1TS	POPTR_0016s06190	POPTR_0016s06190 (11)	scaffold_16:4145853-4146468(+) (11)	NA	P48578	Serine/threonine-protein phosphatase PP2A-3 catalytic subunit	AT3G58500.1	protein phosphatase 2A-4 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	AC235488_34.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase AC235488.1 160871-167050 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.127546.1.A1_a_at	A	A1TS	POPTR_0006s25420	POPTR_0006s25420 (11)	scaffold_6:23822468-23824701(-) (11)	NA	NA	NA	AT5G11630.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 82 Blast hits to 82 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g130500.1	"transcription factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127569.1.A1_at	A	A1MS	POPTR_0011s17240	POPTR_0011s17240 (10)	scaffold_11:18840764-18841469(-) (11)	NA	Q9ZWC8	Serine/threonine-protein kinase BRI1-like 1	AT1G55610.2	BRI1 like 	LOC_Os09g12240.1	"serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.127574.1.A1_at	A	A1TS	POPTR_0005s00270	POPTR_0005s00270 (11)	scaffold_5:43539-43956(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g134610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1276.1.S1_a_at	A	A1TS	POPTR_0005s00710	POPTR_0005s00710 (11)	scaffold_5:312454-313516(-) (11)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1276.1.S1_at	A	A1TS	POPTR_0005s00710	POPTR_0005s00710 (11)	scaffold_5:313664-313749(-) (11)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1276.2.S1_at	A	A1MS	POPTR_0005s00710	POPTR_0005s00710 (9)	scaffold_5:312004-312418(-) (9)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1276.3.S1_s_at	A	A1TS	POPTR_0013s00610	POPTR_0013s00610 (11)	scaffold_13:295312-296209(-) (11)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1276.5.S1_at	A	A1TS	POPTR_0005s00710	POPTR_0005s00710 (11)	scaffold_5:313245-313350(-) (11)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12763.1.S1_a_at	A	A1TS	POPTR_0012s04220	POPTR_0012s04220 (11)	scaffold_12:3461787-3462508(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.2	jasmonate-zim-domain protein 3 	LOC_Os09g23660.2	"ZIM motif family protein, expressed"	Medtr6g083230.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12763.2.S1_at	A	A1TS	POPTR_0013s10040	POPTR_0013s10040 (11)	scaffold_13:10024234-10024718(+) (11)	NA	Q9CAG8	F-box/kelch-repeat protein At1g67480	AT1G67480.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g30210.2	"OsFBK7 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12763.3.S1_s_at	A	A1TS	POPTR_0015s04880	POPTR_0015s04880 (11)	scaffold_15:5090764-5092713(-) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	Medtr6g083230.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12763.4.S1_at	A	A1TS	POPTR_0012s04220	POPTR_0012s04220 (10)	scaffold_12:3462589-3463015(+) (10)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.2	jasmonate-zim-domain protein 3 	LOC_Os09g23660.2	"ZIM motif family protein, expressed"	Medtr6g083230.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12764.1.A1_s_at	A	A1TS	POPTR_0004s22360	POPTR_0004s22360 (11)	scaffold_4:21292277-21292740(+) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT2G28060.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os09g20010.2	"SNF1-related protein kinase regulatory subunit beta-2, putative, expressed"	AC235487_26.1	"5-AMP-activated protein kinase, beta subunit, complex-interacting region AC235487.1 128441-124122 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12764.2.S1_a_at	A	A1TS	POPTR_0009s01430	POPTR_0009s01430 (11)	scaffold_9:1685644-1686154(-) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT2G28060.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os09g20010.2	"SNF1-related protein kinase regulatory subunit beta-2, putative, expressed"	AC235487_26.1	"5-AMP-activated protein kinase, beta subunit, complex-interacting region AC235487.1 128441-124122 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127640.1.A1_at	A	A1TS	POPTR_0004s10570	POPTR_0004s10570 (10)	scaffold_4:9105428-9105581(-) (11)	NA	NA	NA	AT1G61600.1	Protein of unknown function (DUF1262) 	LOC_Os08g31880.1	conserved hypothetical protein	Medtr5g036800.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127644.1.A1_s_at	A	A1TS	POPTR_0012s01680	POPTR_0012s01680 (11)	scaffold_12:1262465-1262502(-) (11)	NA	Q94AT1	Probable protein phosphatase 2C 76	AT5G53140.1	Protein phosphatase 2C family protein 	LOC_Os05g50970.1	"protein phosphatase 2C, putative, expressed"	Medtr3g124450.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127666.1.A1_at	A	A1TS	POPTR_0001s01320	POPTR_0001s01320 (11)	scaffold_1:986012-986203(-) (11)	NA	NA	NA	AT4G19140.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51166.1	expressed protein	Medtr5g027030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127666.1.A1_s_at	A	A1TS	POPTR_0001s01320	POPTR_0001s01320 (11)	scaffold_1:985640-986089(-) (11)	NA	NA	NA	AT4G19140.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51166.1	expressed protein	Medtr5g027030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127680.1.A1_at	A	A1TS	POPTR_0013s11190	POPTR_0013s11190 (11)	scaffold_13:11859155-11859513(-) (11)	NA	NA	NA	AT1G35430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09170.1); Has 23 Blast hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127682.1.A1_at	A	A1TS	POPTR_0001s34490	POPTR_0001s34490 (10)	scaffold_1:32607358-32607465(-) (10)	NA	NA	NA	AT1G29790.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g42770.1	"a_IG002N01.7, putative"	Medtr5g085490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127694.1.A1_at	A	A1TS	POPTR_0017s06610	POPTR_0017s06610 (11)	scaffold_17:5014278-5014337(-) (11)	NA	Q5PP37	Histone-lysine N-methyltransferase ATXR2	AT3G21820.1	histone-lysine N-methyltransferase ATXR2 	LOC_Os04g53700.1	"zinc finger protein, putative, expressed"	Medtr2g103680.1	"Histone-lysine N-methyltransferase ATXR2, putative "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.127721.1.A1_at	A	A1MS	POPTR_0010s07840	POPTR_0010s07840 (11)	scaffold_10:8823234-8823796(-) (11)	NA	P31049	Uncharacterized methyltransferase in lpd-3 5'region	AT3G23510.1	Cyclopropane-fatty-acyl-phospholipid synthase 	LOC_Os12g16650.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr1g064910.1	Cyclopropane-fatty-acyl-phospholipid synthase 	GO:0008610|lipid biosynthetic process	GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
PtpAffx.127722.1.A1_at	A	A1TS	POPTR_0012s09240	POPTR_0012s09240 (11)	scaffold_12:10292637-10293582(-) (11)	NA	NA	NA	AT1G78790.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 69 Blast hits to 69 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os04g40550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127734.1.A1_at	A	A1TS	POPTR_0010s02870	POPTR_0010s02870 (11)	scaffold_10:3360095-3360212(-) (11)	NA	Q0WPJ7	Putative E3 ubiquitin-protein ligase RF298	AT4G03000.2	RING/U-box superfamily protein 	LOC_Os05g04950.2	"protein binding protein, putative, expressed"	Medtr2g025960.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127740.1.A1_at	A	A1TS	POPTR_0002s05240	POPTR_0002s05240 (11)	scaffold_2:3400376-3400822(+) (11)	NA	Q4P4G8	UPF0396 protein UM04995	AT4G02720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g28220.1	"NFKB, putative, expressed"	AC235567_24.1	Protein of unknown function DUF926 AC235567.1 81779-83332 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12775.1.S1_at	A	A1TS	POPTR_0006s09570	POPTR_0006s09570 (11)	scaffold_6:7033053-7033430(-) (11)	NA	NA	NA	AT2G37960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g01008.1	expressed protein	Medtr4g015560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127773.1.A1_at	A	A1TS	POPTR_0011s11950	POPTR_0011s11950 (11)	scaffold_11:14743393-14744002(-) (11)	NA	Q9LUQ5	Probable ubiquitin-conjugating enzyme E2 25	AT3G15355.1	ubiquitin-conjugating enzyme 25 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.127777.1.A1_at	A	A1TS	POPTR_0001s06410	POPTR_0001s06410 (11)	scaffold_1:4913057-4914451(+) (11)	NA	Q6NLV4	Flowering time control protein FY	AT5G13480.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g72220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g039570.1	"WD repeat-containing protein 33, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127799.1.A1_at	A	A1TS	POPTR_0009s14980	POPTR_0009s14980 (11)	scaffold_9:11626505-11626613(+) (11)	NA	Q9ZUX7	tRNA dimethylallyltransferase 2	AT2G27760.1	tRNAisopentenyltransferase 2 	LOC_Os01g73760.1	"IPP transferase, putative, expressed"	Medtr4g073150.1	Isopentenyl transferase-like 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.1278.1.A1_s_at	A	A1TS	POPTR_0018s11960	POPTR_0018s11960 (11)	scaffold_18:12592522-12593096(-) (11)	NA	Q9FGT7	Two-component response regulator ARR18	AT2G25180.1	response regulator 12 	LOC_Os02g55320.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.127832.1.A1_s_at	A	A1TS	POPTR_0002s21600	POPTR_0002s21600 (11)	scaffold_2:18119518-18120022(-) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G15410.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127842.1.A1_at	A	A1TS	POPTR_0001s27580	POPTR_0001s27580 (11)	scaffold_1:26468232-26468744(+) (11)	NA	NA	NA	AT3G12650.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g48680.1	expressed protein	Medtr8g037260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127847.1.A1_at	A	A1TS	POPTR_0006s25500	POPTR_0006s25500 (11)	scaffold_6:23908877-23909398(-) (11)	NA	Q9LYD3	Dehydration-responsive element-binding protein 3	AT5G11590.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g10370.1	"AP2 domain containing protein, expressed"	Medtr2g122400.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.127851.1.A1_at	A	A1TS	POPTR_0015s07880	POPTR_0015s07880 (11)	scaffold_15:9154223-9156591(-) (11)	NA	Q8W0W3	Transcription initiation factor IIB	AT3G10330.1	Cyclin-like family protein 	LOC_Os09g36440.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g108460.1	Cyclin-like; ; 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0008270|zinc ion binding||GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.127856.1.A1_at	A	A1MS	POPTR_0006s04540	POPTR_0006s04540 (11)	scaffold_6:3091832-3092218(-) (11)	NA	NA	NA	AT3G57320.1	unknown protein; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g46710.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127862.1.A1_at	A	A1TS	POPTR_0016s05100	POPTR_0016s05100 (11)	scaffold_16:3086664-3087481(-) (11)	NA	Q66GR3	Transcription factor bHLH130	AT2G42280.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g117830.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.127865.1.A1_at	A	A1TS	POPTR_0006s06020	POPTR_0006s06020 (11)	scaffold_6:4283382-4283874(+) (11)	NA	Q9Y5A7	NEDD8 ultimate buster 1	AT2G12550.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os04g55150.2	"UBA/TS-N domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127878.1.A1_at	A	A1TS	POPTR_0009s02440	POPTR_0009s02440 (10)	scaffold_9:3195667-3195700(-) (10)	NA	NA	NA	AT5G22430.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr2g107610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127896.1.A1_at	A	A1TS	POPTR_0005s28010	POPTR_0005s28010 (11)	scaffold_5:25415562-25415800(+) (11)	NA	Q8RY95	Squamosa promoter-binding-like protein 14	AT1G20980.1	squamosa promoter binding protein-like 14 	LOC_Os08g40260.1	"OsSPL15 - SBP-box gene family member, expressed"	Medtr1g039740.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.127897.1.A1_at	A	A2TS	POPTR_0012s00230	POPTR_0012s00490 (11)//POPTR_0012s00230 (11)	scaffold_12:17112-17255(-) (11)//scaffold_12:170930-171077(-) (11)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127897.1.A1_s_at	A	A2TS	POPTR_0012s00230	POPTR_0012s00490 (11)//POPTR_0012s00230 (11)	scaffold_12:17265-17488(-) (11)//scaffold_12:171087-171310(-) (11)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127904.1.A1_at	A	A1TS	POPTR_0004s12270	POPTR_0004s12270 (11)	scaffold_4:11354494-11354763(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.127926.1.A1_at	A	A1TS	POPTR_0006s22090	POPTR_0006s22090 (11)	scaffold_6:21111648-21112208(-) (11)	NA	P42730	Heat shock protein 101	AT3G52490.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g33980.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr1g112350.1	"Immunoglobulin/major histocompatibility complex; Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12794.1.S1_a_at	A	A1TS	POPTR_0002s04980	POPTR_0002s04980 (11)	scaffold_2:3200848-3201190(+) (11)	NA	Q94A20	BI1-like protein	AT1G03070.2	Bax inhibitor-1 family protein 	LOC_Os03g53400.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr1g083870.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127945.1.A1_at	A	A1TS	POPTR_0004s21590	POPTR_0004s21590 (11)	scaffold_4:20639639-20640156(-) (11)	NA	Q9SII7	Pentatricopeptide repeat-containing protein At2g17210	AT2G17210.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g36620.1	"pentatricopeptide, putative, expressed"	Medtr4g134960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127955.1.A1_at	A	A1TS	POPTR_0012s10990	POPTR_0012s10990 (11)	scaffold_12:11623334-11623723(+) (11)	NA	NA	NA	AT5G50970.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g63470.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g151320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127966.1.A1_at	A	A1TS	POPTR_0008s00440	POPTR_0008s00440 (11)	scaffold_8:176857-178185(+) (11)	NA	NA	NA	AT1G78915.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g18720.1	"tetratricopeptide repeat containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127968.1.A1_at	A	A1TS	POPTR_0014s02630	POPTR_0014s02630 (11)	scaffold_14:2189384-2189888(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.127968.2.A1_a_at	A	A2TS	POPTR_0014s02630	POPTR_0014s02630 (11)//POPTR_0014s02650 (11)	scaffold_14:2189212-2189615(+) (11)//scaffold_14:2208912-2209315(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.127968.2.A1_at	A	A1TS	POPTR_0014s02650	POPTR_0014s02650 (11)	scaffold_14:2208938-2209392(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.12797.2.S1_a_at	A	A1TS	POPTR_0003s01810	POPTR_0003s01810 (11)	scaffold_3:1677820-1678296(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os07g43050.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.127977.1.A1_at	A	A1TS	POPTR_0007s01130	POPTR_0007s01130 (11)	scaffold_7:614958-615679(+) (11)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.127993.1.A1_at	A	A1TS	POPTR_0003s07520	POPTR_0003s07520 (11)	scaffold_3:9083932-9084353(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT4G16650.1	O-fucosyltransferase family protein 	LOC_Os04g46570.1	"growth regulator related protein, putative, expressed"	Medtr8g105620.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1280.1.S1_at	A	A1TS	POPTR_0005s19200	POPTR_0005s19200 (11)	scaffold_5:17815480-17816922(+) (11)	NA	Q5RC80	RNA-binding protein 39	AT5G09880.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.12800.1.S1_a_at	A	A1TS	POPTR_0009s11560	POPTR_0009s11560 (11)	scaffold_9:9578799-9579143(+) (11)	NA	NA	NA	AT5G48490.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g18750.1	"LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128011.1.A1_at	A	A1TS	POPTR_0003s21910	POPTR_0003s21910 (10)	scaffold_3:19880548-19880941(+) (10)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12560.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011780.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12802.1.A1_s_at	A	A1TS	POPTR_0014s13580	POPTR_0014s13580 (11)	scaffold_14:9984101-9984504(+) (11)	NA	NA	NA	AT3G26670.3	Protein of unknown function (DUF803) 	LOC_Os02g31874.1	"DUF803 domain containing, putative, expressed"	Medtr3g105270.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12802.2.A1_at	A	A1MS	POPTR_0014s13580	POPTR_0014s13580 (10)	scaffold_14:9983997-9984115(+) (10)	NA	NA	NA	AT3G26670.3	Protein of unknown function (DUF803) 	LOC_Os02g31874.1	"DUF803 domain containing, putative, expressed"	Medtr3g105270.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128034.1.A1_at	A	A1TS	POPTR_0005s12710	POPTR_0005s12710 (9)	scaffold_5:9470087-9470559(+) (9)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.128047.1.A1_at	A	A1TS	POPTR_0001s29610	POPTR_0001s29610 (11)	scaffold_1:28242391-28242959(+) (11)	NA	NA	NA	AT1G16630.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16270.1); Has 10587 Blast hits to 5736 proteins in 617 species: Archae - 88; Bacteria - 963; Metazoa - 3686; Fungi - 820; Plants - 541; Viruses - 438; Other Eukaryotes - 4051 (source: NCBI BLink). 	LOC_Os03g46920.1	expressed protein	Medtr8g146840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128057.1.A1_at	A	A1TS	POPTR_0015s12980	POPTR_0015s12980 (11)	scaffold_15:13114606-13116341(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.128059.1.A1_at	A	A1TS	POPTR_0010s11320	POPTR_0010s11320 (11)	scaffold_10:11613126-11613307(-) (11)	NA	Q94B71	Protein OBERON 3	AT1G14740.1	Protein of unknown function (DUF1423) 	LOC_Os03g13590.1	"potyvirus VPg interacting protein, putative, expressed"	CU633465_5.1	Arabidopsis thaliana 130.7kDa hypothetical protein CU633465.7 34422-38324 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128059.1.A1_s_at	A	A1TS	POPTR_0010s11320	POPTR_0010s11320 (11)	scaffold_10:11613299-11613776(-) (11)	NA	Q94B71	Protein OBERON 3	AT1G14740.1	Protein of unknown function (DUF1423) 	LOC_Os03g13590.1	"potyvirus VPg interacting protein, putative, expressed"	CU633465_5.1	Arabidopsis thaliana 130.7kDa hypothetical protein CU633465.7 34422-38324 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128060.1.A1_a_at	A	A1TS	POPTR_0020s00320	POPTR_0020s00320 (10)	scaffold_20:364980-365516(-) (10)	NA	O82256	Zinc finger protein CONSTANS-LIKE 13	AT2G47890.1	B-box type zinc finger protein with CCT domain 	LOC_Os03g22770.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g129880.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.128061.1.A1_at	A	A1TS	POPTR_0001s13960	POPTR_0001s13960 (11)	scaffold_1:11001963-11002006(+) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128061.1.A1_s_at	A	A1TS	POPTR_0001s13960	POPTR_0001s13960 (11)	scaffold_1:11001760-11001849(+) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128067.1.A1_at	A	A1MS	POPTR_0006s20150	POPTR_0006s20150 (11)	scaffold_6:19205511-19205683(+) (11)	POPTR_0018s11860 (6)	Q5XJD3	Pre-mRNA 3'-end-processing factor FIP1	AT5G58040.1	homolog of yeast FIP1 [V] 	LOC_Os03g51520.2	"fip1 motif family protein, expressed"	Medtr8g137570.1	Fip1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128070.1.A1_at	A	A1MS	POPTR_0015s05140	POPTR_0015s05140 (10)	scaffold_15:5478223-5478460(+) (10)	NA	Q09690	Dual specificity protein kinase pom1	AT1G73460.1	Protein kinase superfamily protein 	LOC_Os03g51020.1	expressed protein	Medtr6g078370.1	"protein kinase family protein, related "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.128071.1.A1_at	A	A1TS	POPTR_0005s09570	POPTR_0005s09570 (11)	scaffold_5:6667953-6668328(-) (11)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12808.1.S1_s_at	A	A1TS	POPTR_0002s07380	POPTR_0002s07380 (11)	scaffold_2:5062679-5063042(+) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT1G43850.2	SEUSS transcriptional co-regulator 	LOC_Os11g10070.1	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128091.1.A1_at	A	A1TS	POPTR_0006s01890	POPTR_0006s01890 (11)	scaffold_6:1136945-1137374(-) (11)	NA	NA	NA	AT4G16400.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1281.1.A1_at	A	A1TS	POPTR_0008s06040	POPTR_0008s06040 (11)	scaffold_8:3555937-3556293(-) (11)	NA	Q28CY2	Eukaryotic translation initiation factor 3 subunit G	AT3G11400.1	eukaryotic translation initiation factor 3G1 	LOC_Os02g54700.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g154870.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1281.2.S1_at	A	A1TS	POPTR_0010s20650	POPTR_0010s20650 (11)	scaffold_10:18142319-18142614(+) (11)	NA	Q28CY2	Eukaryotic translation initiation factor 3 subunit G	AT3G11400.1	eukaryotic translation initiation factor 3G1 	LOC_Os02g54700.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g154870.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1281.3.A1_a_at	A	A1TS	POPTR_0008s06040	POPTR_0008s06040 (11)	scaffold_8:3557455-3557752(-) (11)	NA	Q28CY2	Eukaryotic translation initiation factor 3 subunit G	AT3G11400.1	eukaryotic translation initiation factor 3G1 	LOC_Os02g54700.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g154870.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1281.3.A1_at	A	A1MS	POPTR_0008s06040	POPTR_0008s06040 (11)	scaffold_8:3557198-3557469(-) (11)	NA	Q28CY2	Eukaryotic translation initiation factor 3 subunit G	AT3G11400.1	eukaryotic translation initiation factor 3G1 	LOC_Os02g54700.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g154870.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.128107.1.A1_at	A	A1TS	POPTR_0016s10580	POPTR_0016s10580 (11)	scaffold_16:8886555-8887029(+) (11)	NA	Q93VV0	Probable S-acyltransferase At3g09320	AT3G09320.1	DHHC-type zinc finger family protein 	LOC_Os01g62620.1	"DHHC zinc finger domain containing protein, expressed"	Medtr1g120410.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.128115.1.A1_at	A	A1TS	POPTR_0018s11630	POPTR_0018s11630 (11)	scaffold_18:12283288-12283519(-) (11)	NA	P59583	Probable WRKY transcription factor 32	AT4G30935.1	WRKY DNA-binding protein 32 	LOC_Os08g17400.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr8g145380.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.128118.1.A1_at	A	A1TS	POPTR_0003s07930	POPTR_0003s07930 (9)	scaffold_3:9420808-9421870(-) (9)	NA	Q8W5B1	Polycomb group protein VERNALIZATION 2	AT4G16845.1	VEFS-Box of polycomb protein 	LOC_Os09g13630.1	"ZOS9-03 - C2H2 zinc finger protein, expressed"	Medtr5g013280.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128121.1.A1_at	A	A1TS	POPTR_0014s19020	POPTR_0014s19020 (9)	scaffold_14:16735163-16735848(+) (9)	NA	Q6ZRS2	Helicase SRCAP	AT3G24870.1	"Helicase/SANT-associated, DNA binding protein "	LOC_Os08g08000.1	"DNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128129.1.A1_at	A	A1TS	POPTR_0014s16250	POPTR_0014s16250 (11)	scaffold_14:12330997-12331726(-) (11)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT5G35740.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g105130.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128135.1.A1_at	A	A1TS	POPTR_0002s20070	POPTR_0002s20070 (11)	scaffold_2:16005138-16005420(+) (11)	NA	NA	NA	AT4G13030.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g19280.1	expressed protein	Medtr7g062150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128139.1.A1_a_at	A	A1TS	POPTR_0002s11920	POPTR_0002s11920 (11)	scaffold_2:8834660-8835388(+) (11)	NA	NA	NA	AT5G63905.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g023290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128139.1.A1_at	A	A1TS	POPTR_0002s11920	POPTR_0002s11920 (9)	scaffold_2:8834639-8835632(+) (9)	NA	NA	NA	AT5G63905.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g023290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128139.2.A1_at	A	A1TS	POPTR_0002s11920	POPTR_0002s11920 (10)	scaffold_2:8834822-8835253(+) (10)	NA	NA	NA	AT5G63905.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g023290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128147.1.A1_a_at	A	A1TS	POPTR_0030s00330	POPTR_0030s00330 (11)	scaffold_30:102958-104268(-) (11)	NA	Q9VLT1	Protein MON2 homolog	AT5G27970.1	ARM repeat superfamily protein 	LOC_Os01g56590.1	"guanine nucleotide exchange family protein, putative, expressed"	Medtr1g096700.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128159.1.S1_s_at	A	A1TS	POPTR_0017s03520	POPTR_0017s03520 (11)	scaffold_17:2558487-2558746(+) (11)	NA	Q50EK6	Abietadienol/abietadienal oxidase	AT1G73340.1	Cytochrome P450 superfamily protein 	LOC_Os11g04710.1	"cytochrome P450, putative, expressed"	Medtr6g083890.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.128165.1.A1_a_at	A	A1TS	POPTR_0017s06590	POPTR_0017s06590 (11)	scaffold_17:5003596-5003947(+) (11)	NA	NA	NA	AT4G26400.1	RING/U-box superfamily protein 	NA	NA	Medtr2g117130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128166.1.A1_at	A	A1TS	POPTR_0010s09940	POPTR_0010s09940 (9)	scaffold_10:10542752-10543536(+) (9)	NA	Q9S7X6	Thermospermine synthase ACAULIS5	AT5G19530.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g14190.1	"spermidine synthase, putative, expressed"	Medtr5g006230.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.128173.1.A1_at	A	A1TS	POPTR_0017s04250	POPTR_0017s04250 (11)	scaffold_17:3281536-3281744(+) (11)	NA	Q9R0X4	"Acyl-coenzyme A thioesterase 9, mitochondrial"	AT2G30720.1	Thioesterase/thiol ester dehydrase-isomerase superfamily protein 	LOC_Os09g34190.1	"acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed"	Medtr4g128060.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128177.1.A1_at	A	A1TS	POPTR_0017s00270	POPTR_0017s00270 (10)	scaffold_17:57993-58151(-) (11)//scaffold_17:75337-75494(-) (9)//scaffold_17:2672781-2672939(+) (10)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1282.1.S1_at	A	A1TS	POPTR_0007s04670	POPTR_0007s04670 (11)	scaffold_7:2888732-2889222(-) (11)	NA	NA	NA	AT3G52430.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os11g09010.2	"lipase, putative, expressed"	Medtr4g143520.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128201.1.S1_at	A	A1TS	POPTR_0006s17730	POPTR_0006s17730 (10)	scaffold_6:15881416-15882143(+) (10)	NA	Q8LGU6	Cell division cycle protein 27 homolog B	AT2G20000.1	CDC27  family protein 	LOC_Os06g41750.1	"tetratricopeptide repeat domain containing protein, expressed"	AC233572_1.1	Tetratricopeptide-like helical; AC233572.2 2-8768 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128202.1.A1_at	A	A1TS	POPTR_0006s27800	POPTR_0006s27800 (9)	scaffold_6:25660524-25661675(+) (9)	NA	P62598	Two-component response regulator ARR12	AT2G25180.1	response regulator 12 	LOC_Os02g08500.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.128206.1.A1_s_at	A	A1TS	POPTR_0005s22620	POPTR_0005s22620 (11)	scaffold_5:21532681-21533139(+) (11)	NA	Q58DV0	Protein pelota homolog	AT4G27650.1	Eukaryotic release factor 1 (eRF1) family protein 	LOC_Os04g56480.1	"pelota, putative, expressed"	Medtr7g124490.1	Probable translation factor pelota 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128212.1.A1_at	A	A1TS	POPTR_0012s05850	POPTR_0012s05850 (9)	scaffold_12:5701134-5701317(+) (9)	NA	NA	NA	AT5G07980.1	dentin sialophosphoprotein-related 	LOC_Os03g11460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128225.1.A1_a_at	A	A1TS	POPTR_0009s09780	POPTR_0009s09780 (11)	scaffold_9:8569604-8569862(+) (11)	NA	Q71DJ5	Triacylglycerol lipase 1	AT2G15230.1	lipase 1 	LOC_Os09g01590.1	"triacylglycerol lipase 1 precursor, putative, expressed"	Medtr5g092310.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.128235.1.A1_at	A	A1TS	POPTR_0007s12170	POPTR_0007s12170 (11)	scaffold_7:12482201-12482648(-) (11)	NA	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.2	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.128240.1.A1_at	A	A1TS	POPTR_0014s04870	POPTR_0014s04870 (10)	scaffold_14:3764879-3765392(+) (10)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
PtpAffx.128269.1.S1_s_at	A	A1TS	POPTR_0014s10140	POPTR_0014s10140 (11)	scaffold_14:7606854-7607948(+) (11)	NA	P19684	"33 kDa ribonucleoprotein, chloroplastic"	AT1G01080.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g02390.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g146100.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.128286.1.A1_a_at	A	A1TS	POPTR_0004s20030	POPTR_0004s20030 (9)	scaffold_4:19674021-19674263(-) (9)	NA	Q9ZQW8	Splicing factor U2af small subunit A	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.128286.1.A1_at	A	A1TS	POPTR_0004s20030	POPTR_0004s20030 (11)	scaffold_4:19674000-19675260(-) (11)	NA	Q9ZQW8	Splicing factor U2af small subunit A	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.128300.1.S1_s_at	A	A9TS	POPTR_0019s01950	POPTR_0073s00200 (11)//POPTR_0294s00200 (11)//POPTR_0019s02760 (11)//POPTR_0019s01950 (11)//POPTR_0019s02740 (11)//POPTR_0019s02700 (11)//POPTR_0053s00220 (11)//POPTR_0019s02720 (11)//POPTR_0019s01910 (9)	scaffold_19:1685341-1685547(+) (9)//scaffold_19:1731861-1732919(+) (11)//scaffold_19:2508488-2509442(+) (11)//scaffold_19:2524814-2525898(+) (11)//scaffold_19:2542715-2543756(+) (11)//scaffold_19:2567201-2568310(+) (11)//scaffold_294:11229-12284(+) (11)//scaffold_53:57565-58658(-) (11)//scaffold_73:13475-14509(+) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.128322.1.S1_at	A	A1TS	POPTR_0001s47540	POPTR_0001s47540 (11)	scaffold_1:47696510-47698415(+) (11)	NA	Q9FKT0	Actin-related protein 8	AT5G56180.1	actin-related protein 8 	LOC_Os04g57210.1	"actin-6, putative, expressed"	Medtr3g016840.1	Cyclin-like F-box; Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.128342.1.S1_s_at	A	A1TS	POPTR_0004s05470	POPTR_0004s05470 (11)	scaffold_4:4225636-4226550(-) (11)	NA	Q94CD5	Ubiquitin-like modifier-activating enzyme atg7	AT5G45900.1	ThiF family protein 	LOC_Os01g42850.2	"ThiF family domain containing protein, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	NA
PtpAffx.128445.1.S1_at	A	A1TS	POPTR_0014s15170	POPTR_0014s15170 (11)	scaffold_14:11263990-11264898(-) (11)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.12845.1.S1_s_at	A	A1TS	POPTR_0014s09920	POPTR_0014s09920 (11)	scaffold_14:7439868-7440314(-) (11)	NA	P53681	CDPK-related protein kinase	AT2G46700.1	CDPK-related kinase 3 	LOC_Os06g50030.1	"CAMK_CAMK_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr7g145870.1	Protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.128450.1.S1_at	A	A1TS	POPTR_0002s09750	POPTR_0002s09750 (9)	scaffold_2:6991583-6991675(+) (9)	POPTR_0005s17110 (8)	Q9S9Z7	Probable protein phosphatase 2C 10	AT1G34750.1	Protein phosphatase 2C family protein 	LOC_Os04g37904.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12848.1.S1_at	A	A1TS	POPTR_0008s17650	POPTR_0008s17650 (11)	scaffold_8:11861066-11861505(-) (11)	NA	Q9SP35	Mitochondrial import inner membrane translocase subunit Tim17	AT2G37410.2	translocase inner membrane subunit 17-2 	LOC_Os07g41330.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.128484.1.A1_s_at	A	A1TS	POPTR_0003s07640	POPTR_0003s07640 (11)	scaffold_3:9171286-9171484(-) (11)	NA	P97868	E3 ubiquitin-protein ligase RBBP6	AT5G47430.1	"DWNN domain, a CCHC-type zinc finger "	LOC_Os10g29560.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g105530.1	"DNA-binding protein-like, putative "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.128494.1.S1_at	A	A2TS	POPTR_0002s02680	POPTR_0002s02680 (11)//POPTR_0005s25750 (11)	scaffold_2:1587831-1588355(-) (11)//scaffold_5:23952275-23952781(+) (11)	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128497.1.S1_at	A	A1TS	POPTR_0018s09080	POPTR_0018s09080 (11)	scaffold_18:9983084-9983604(-) (11)	NA	B7K735	Elongation factor Ts	AT4G29060.1	elongation factor Ts family protein 	LOC_Os12g35630.1	"elongation factor TS family protein, expressed"	Medtr6g098870.1	"Ubiquitin-associated; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	GO:0005622|intracellular
PtpAffx.128519.1.S1_at	A	A2TS	POPTR_0679s00220	POPTR_0679s00220 (10)//POPTR_0011s03110 (9)	scaffold_11:3176717-3177197(+) (9)//scaffold_679:3174-7372(-) (10)	POPTR_0306s00210 (7)	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.128537.1.S1_at	A	A1TS	POPTR_0008s15590	POPTR_0008s15590 (10)	scaffold_8:10367470-10368714(+) (10)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128558.1.S1_at	A	A1TS	POPTR_0008s04930	POPTR_0008s04930 (10)	scaffold_8:2857024-2858057(-) (10)	NA	Q9FY46	"Sulfate transporter 4.1, chloroplastic"	AT5G13550.1	sulfate transporter 4.1 	LOC_Os09g06499.2	"sulfate transporter 4.1, chloroplast precursor, putative, expressed"	Medtr7g022760.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.128559.2.S1_s_at	A	A1TS	POPTR_0002s23920	POPTR_0002s23920 (11)	scaffold_2:21395009-21396115(+) (11)	NA	Q60HE9	Lysosomal alpha-mannosidase	AT3G26720.1	Glycosyl hydrolase family 38 protein 	LOC_Os11g32260.1	"lysosomal alpha-mannosidase precursor, putative, expressed"	Medtr7g097040.1	"Glycoside hydrolase, family 38; Sugar transporter superfamily; Galactose mutarotase-like; "	GO:0044262|cellular carbohydrate metabolic process||GO:0006013|mannose metabolic process||GO:0044281|small molecule metabolic process	GO:0008270|zinc ion binding||GO:0004559|alpha-mannosidase activity	NA
PtpAffx.128559.3.A1_a_at	A	A1TS	POPTR_0005s00250	POPTR_0005s00250 (11)	scaffold_5:34189-34701(+) (11)	NA	Q8BG09	Transmembrane protein 184B	AT3G05940.1	Protein of unknown function (DUF300) 	LOC_Os03g61210.1	"domain of unknown function domain containing protein, expressed"	Medtr7g134570.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1286.1.S1_s_at	A	A1TS	POPTR_0017s14280	POPTR_0017s14280 (11)	scaffold_17:14400137-14400390(+) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr8g140130.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.1286.2.S1_s_at	A	A1TS	POPTR_0004s10660	POPTR_0004s10660 (11)	scaffold_4:9179513-9179609(+) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.1286.5.S1_s_at	A	A1TS	POPTR_0004s10660	POPTR_0004s10660 (11)	scaffold_4:9178790-9178837(+) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.128617.1.S1_at	A	A1TS	POPTR_0008s19520	POPTR_0008s19520 (11)	scaffold_8:13447636-13449319(-) (11)	NA	NA	NA	AT1G69935.1	short hypocotyl in white light1 	LOC_Os03g12930.1	expressed protein	Medtr5g038230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128620.1.A1_at	A	A1TS	POPTR_0008s10090	POPTR_0008s10090 (11)	scaffold_8:6327207-6327687(+) (11)	NA	NA	NA	AT3G06500.1	Plant neutral invertase family protein 	LOC_Os03g20020.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g102720.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128624.1.A1_at	A	A1TS	POPTR_0016s10980	POPTR_0016s10980 (11)	scaffold_16:9401878-9403486(-) (11)	NA	Q9SCQ2	E3 ubiquitin-protein ligase UPL7	AT3G53090.2	ubiquitin-protein ligase 7 	LOC_Os03g47949.1	"HECT-domain domain containing protein, expressed"	Medtr2g037340.1	IQ calmodulin-binding region; HECT 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.1287.1.A1_s_at	A	A2TS	POPTR_0006s11530	POPTR_0016s15080 (11)//POPTR_0006s11530 (11)	scaffold_16:14121822-14122402(-) (11)//scaffold_6:8738656-8739249(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21230.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.128701.1.S1_at	A	A1TS	POPTR_0008s03810	POPTR_0008s03810 (11)	scaffold_8:2055966-2056185(-) (11)	NA	Q43052	Phenylalanine ammonia-lyase G2B	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os02g41650.3	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
PtpAffx.128701.1.S1_s_at	A	A1TS	POPTR_0008s03810	POPTR_0008s03810 (11)	scaffold_8:2054112-2056238(-) (11)	NA	Q43052	Phenylalanine ammonia-lyase G2B	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os02g41650.3	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
PtpAffx.128713.1.S1_at	A	A1MS	POPTR_0011s15790	POPTR_0011s15790 (11)	scaffold_11:17854858-17855599(-) (11)	POPTR_0001s43320 (6)	NA	NA	AT2G36840.1	ACT-like superfamily protein 	LOC_Os09g39740.1	"ACT domain containing protein, expressed"	Medtr7g124000.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.12873.1.A1_at	A	A1TS	POPTR_0001s15140	POPTR_0001s15140 (11)	scaffold_1:11979681-11979818(-) (11)	NA	NA	NA	AT4G17600.1	Chlorophyll A-B binding family protein 	LOC_Os02g03330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12873.2.S1_s_at	A	A1TS	POPTR_0003s08180	POPTR_0003s08180 (11)	scaffold_3:9590552-9590831(+) (11)	NA	NA	NA	AT4G17600.1	Chlorophyll A-B binding family protein 	LOC_Os02g03330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12874.1.S1_at	A	A1TS	POPTR_0006s24900	POPTR_0006s24900 (11)	scaffold_6:23411896-23411931(+) (11)	NA	P49043	Vacuolar-processing enzyme	AT4G32940.1	gamma vacuolar processing enzyme 	LOC_Os01g37910.3	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr3g140280.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.12874.1.S1_s_at	A	A1TS	POPTR_0006s24900	POPTR_0006s24900 (10)	scaffold_6:23411796-23412429(+) (10)	NA	P49043	Vacuolar-processing enzyme	AT4G32940.1	gamma vacuolar processing enzyme 	LOC_Os01g37910.3	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr3g140280.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.128756.1.S1_at	A	A1TS	POPTR_0012s13520	POPTR_0012s13520 (11)	scaffold_12:13641168-13641679(-) (11)	NA	Q9M2Z5	F-box/LRR-repeat protein At3g48880	AT3G48880.2	RNI-like superfamily protein 	LOC_Os10g35920.1	"OsFBX389 - F-box domain containing protein, expressed"	Medtr7g080880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128783.1.S1_at	A	A1TS	POPTR_0012s05990	POPTR_0012s05990 (11)	scaffold_12:6037339-6038298(-) (11)	NA	P02723	"ADP,ATP carrier protein"	AT5G17400.1	endoplasmic reticulum-adenine nucleotide transporter 1 	LOC_Os11g43960.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g154910.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128785.1.S1_s_at	A	A2TS	POPTR_0008s09440	POPTR_0010s16690 (11)//POPTR_0008s09440 (11)	scaffold_10:15559617-15560271(-) (11)//scaffold_8:5849330-5849973(+) (11)	NA	Q3EC77	Probable methyltransferase PMT5	AT2G03480.1	QUASIMODO2 LIKE 2 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr4g115600.1	"dehydration-responsive protein-related, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.128798.1.S1_at	A	A1TS	POPTR_0017s09050	POPTR_0017s09050 (11)	scaffold_17:7723309-7723915(-) (11)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.128815.1.S1_s_at	A	A1TS	POPTR_0013s08530	POPTR_0013s08530 (11)	scaffold_13:7802633-7803152(+) (11)	NA	O80809	Leucine-rich repeat receptor-like protein CLAVATA2	AT1G65380.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g39100.1	"fasciated ear2, putative, expressed"	Medtr7g089330.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.128816.1.S1_at	A	A2TS	POPTR_0005s02860	POPTR_0005s02860 (11)//POPTR_0005s02980 (10)	scaffold_5:1849614-1851386(-) (11)//scaffold_5:1947842-1949438(-) (11)	NA	Q9V8W3	Rab proteins geranylgeranyltransferase component A	AT3G06540.1	Rab escort protein 	LOC_Os01g16354.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr5g024130.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128825.2.S1_a_at	A	A2TS	POPTR_0005s18580	POPTR_0005s18580 (11)//POPTR_0007s10510 (9)	scaffold_5:16814663-16815217(-) (11)//scaffold_7:10516871-10517413(+) (11)	NA	Q5XIT1	Microtubule-associated protein RP/EB family member 3	AT5G67270.1	end binding protein 1C 	LOC_Os10g35580.1	"ATEB1A-like microtubule associated protein, putative, expressed"	Medtr5g016450.1	Calponin-like actin-binding; EB1 	NA	GO:0008017|microtubule binding	NA
PtpAffx.128832.1.S1_at	A	A1TS	POPTR_0009s10620	POPTR_0009s10620 (11)	scaffold_9:9084296-9086380(-) (11)	POPTR_0004s14900 (7)	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.128848.1.S1_at	A	A1TS	POPTR_0005s23170	POPTR_0005s23170 (11)	scaffold_5:21988548-21988607(-) (11)	POPTR_0002s05350 (8)	Q2MY58	Patatin group A-3	AT3G63200.1	PATATIN-like protein 9 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g086350.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.128848.1.S1_s_at	A	A2TS	POPTR_0002s05350	POPTR_0005s23170 (11)//POPTR_0002s05350 (11)	scaffold_2:3481192-3481374(+) (11)//scaffold_5:21988344-21988526(-) (11)	NA	Q2MY58	Patatin group A-3	AT3G63200.1	PATATIN-like protein 9 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g086350.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.128871.1.S1_at	A	A1TS	POPTR_0010s14090	POPTR_0010s14090 (11)	scaffold_10:13786189-13787205(-) (11)	NA	NA	NA	AT3G25680.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins in 355 species: Archae - 39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink). 	LOC_Os06g30390.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr5g069510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128889.1.S1_at	A	A1TS	POPTR_0003s16720	POPTR_0003s16720 (11)	scaffold_3:16252850-16253612(-) (11)	NA	Q9C509	Sphingosine-1-phosphate lyase	AT1G27980.1	dihydrosphingosine phosphate lyase 	LOC_Os01g01080.1	"decarboxylase, putative, expressed"	Medtr7g022250.1	Pyridoxal-dependent decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128895.1.S1_at	A	A2TS	POPTR_0006s13650	POPTR_0006s13650 (11)//POPTR_0006s13640 (10)	scaffold_6:10851514-10853635(-) (10)//scaffold_6:10866514-10868812(-) (11)	NA	Q9SMZ4	Alpha-aminoadipic semialdehyde synthase	AT4G33150.2	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme 	LOC_Os02g54254.1	"saccharopine dehydrogenase, putative, expressed"	Medtr8g133370.1	"NAD(P) transhydrogenase, alpha subunit; Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme conserved region "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.128896.1.S1_s_at	A	A1TS	POPTR_0004s16570	POPTR_0004s16570 (11)	scaffold_4:17007553-17009000(+) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT4G39150.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os05g46620.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.1289.1.S1_at	A	A1TS	POPTR_0006s08080	POPTR_0006s08080 (11)	scaffold_6:5886177-5887198(+) (11)	NA	NA	NA	AT5G58110.1	chaperone binding;ATPase activators 	LOC_Os06g49030.1	"activator of 90 kDa heat shock protein ATPase homolog, putative, expressed"	NA	NA	NA	GO:0051087|chaperone binding||GO:0001671|ATPase activator activity	GO:0005737|cytoplasm
PtpAffx.128904.1.S1_at	A	A1TS	POPTR_0001s15530	POPTR_0001s15530 (11)	scaffold_1:12367468-12368801(+) (11)	NA	O65202	Peroxisomal acyl-coenzyme A oxidase 1	AT4G16760.1	acyl-CoA oxidase 1 	LOC_Os06g01390.1	"acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed"	Medtr8g105410.1	Acyl-CoA dehydrogenase C-terminal-like; 	GO:0006635|fatty acid beta-oxidation||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity||GO:0003997|acyl-CoA oxidase activity	GO:0005777|peroxisome
PtpAffx.128912.1.S1_at	A	A1TS	POPTR_0022s00410	POPTR_0022s00410 (10)	scaffold_22:136305-136458(+) (10)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.128912.2.S1_s_at	A	A1TS	POPTR_0022s00410	POPTR_0022s00410 (11)	scaffold_22:135178-135957(+) (11)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.128944.1.S1_s_at	A	A1TS	POPTR_0012s05180	POPTR_0012s05180 (11)	scaffold_12:4700654-4701034(+) (11)	NA	O81833	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	AT4G27300.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr6g027990.2	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.128949.1.A1_s_at	A	A1TS	POPTR_0018s13330	POPTR_0018s13330 (11)	scaffold_18:13690664-13693143(-) (11)	NA	Q8LFQ6	Glutaredoxin-C4	AT5G20500.1	Glutaredoxin family protein 	LOC_Os06g44910.1	"OsGrx_C4 - glutaredoxin subgroup I, expressed"	Medtr2g043290.3	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.128965.1.S1_at	A	A1TS	POPTR_0003s03960	POPTR_0003s03960 (10)	scaffold_3:4557836-4558917(-) (10)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
PtpAffx.128967.1.S1_at	A	A1TS	POPTR_0007s10900	POPTR_0007s10900 (9)	scaffold_7:11106102-11106524(+) (9)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.128988.1.S1_at	A	A1TS	POPTR_0009s10190	POPTR_0009s10190 (9)	scaffold_9:8816957-8817431(-) (9)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128997.1.S1_at	A	A1TS	POPTR_0005s16970	POPTR_0005s16970 (9)	scaffold_5:13995503-13996020(+) (9)	NA	NA	NA	AT5G65170.1	VQ motif-containing protein 	LOC_Os08g31660.1	"VQ domain containing protein, putative, expressed"	Medtr5g072210.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1290.1.A1_s_at	A	A1TS	POPTR_0006s24480	POPTR_0006s24480 (11)	scaffold_6:23072330-23072769(-) (11)	NA	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400	AT1G68400.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os01g04230.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g140560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.129001.1.S1_at	A	A1TS	POPTR_0007s07120	POPTR_0007s07120 (10)	scaffold_7:5450269-5450716(-) (10)	NA	Q94JQ6	Cellulose synthase A catalytic subunit 6 [UDP-forming]	AT5G64740.1	cellulose synthase 6 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr4g141680.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.129002.1.S1_at	A	A1MS	POPTR_0005s06600	POPTR_0005s06600 (10)	scaffold_5:4392868-4393041(-) (10)//scaffold_5:4419310-4420055(-) (11)	NA	NA	NA	AT5G64010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g142970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129002.1.S1_s_at	A	A2TS	POPTR_0005s06580	POPTR_0005s06580 (11)//POPTR_0005s06600 (11)	scaffold_5:4393078-4393445(-) (11)//scaffold_5:4419520-4419887(-) (11)	NA	NA	NA	AT5G64010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g142970.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12902.1.A1_at	A	A1TS	POPTR_0002s10040	POPTR_0002s10040 (11)	scaffold_2:7211909-7212654(+) (11)	NA	Q73KB2	Seryl-tRNA synthetase	AT1G11870.2	Seryl-tRNA synthetase 	LOC_Os11g39670.1	"seryl-tRNA synthetase, putative, expressed"	Medtr3g150340.1	"tRNA synthetase, class II (G, H, P and S) "	GO:0006434|seryl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004828|serine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.129030.1.S1_s_at	A	A1TS	POPTR_0002s21490	POPTR_0002s21490 (11)	scaffold_2:17986909-17988667(-) (11)	POPTR_0002s21485 (8)	Q69KJ0	Ribonuclease 3-like protein 3	AT4G15417.1	RNAse II-like 1 	LOC_Os06g25250.1	"endoribonuclease Dicer, putative, expressed"	Medtr3g110470.1	"Ribonuclease III, bacterial "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.12905.1.S1_s_at	A	A1TS	POPTR_0008s14480	POPTR_0008s14480 (11)	scaffold_8:9612798-9613043(+) (11)	NA	Q7NML9	ATP-dependent Clp protease adapter protein ClpS	AT1G68660.1	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 	LOC_Os01g61700.1	ATP-dependent Clp protease adaptor protein ClpS containing protein	NA	NA	GO:0030163|protein catabolic process||GO:0009057|macromolecule catabolic process	NA	NA
PtpAffx.129062.1.S1_at	A	A1TS	POPTR_0015s08030	POPTR_0015s08030 (10)	scaffold_15:9310145-9311218(-) (10)	NA	Q9S7Q2	"Pentatricopeptide repeat-containing protein At1g74850, chloroplastic"	AT1G74850.1	plastid transcriptionally active 2 	LOC_Os03g60910.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015600.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129129.1.S1_at	A	A1TS	POPTR_0001s02150	POPTR_0001s02150 (10)	scaffold_1:1594785-1595932(+) (10)	NA	Q9QWZ1	Cell cycle checkpoint protein RAD1	AT4G17760.1	damaged DNA binding;exodeoxyribonuclease IIIs 	LOC_Os06g04190.1	"rad1, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008853|exodeoxyribonuclease III activity||GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.129164.1.S1_at	A	A1TS	POPTR_0001s16120	POPTR_0001s16120 (9)	scaffold_1:12941103-12941773(+) (9)	NA	Q9UUH0	Uncharacterized protein C630.12	AT1G53710.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os03g27950.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g027100.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.129168.1.S1_at	A	A1TS	POPTR_0008s16760	POPTR_0008s16760 (11)	scaffold_8:11281949-11282935(+) (11)	POPTR_0010s08130 (7)	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G14350.3	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.129180.1.S1_at	A	A1TS	POPTR_0010s07590	POPTR_0010s07590 (10)	scaffold_10:8617096-8617359(+) (10)	NA	NA	NA	AT1G04530.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04710.1	expressed protein	Medtr1g087320.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12919.1.A1_at	A	A1TS	POPTR_0002s00410	POPTR_0002s00410 (11)	scaffold_2:129787-130292(-) (11)	NA	NA	NA	AT1G76610.1	"Protein of unknown function, DUF617 "	LOC_Os01g59200.1	"DUF617 domain containing protein, expressed"	Medtr3g102280.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129194.1.S1_at	A	A1TS	POPTR_0017s02060	POPTR_0017s02060 (9)	scaffold_17:1497244-1497480(-) (9)	NA	O24301	Sucrose synthase 2	AT5G37180.1	sucrose synthase 5 	LOC_Os04g24430.1	"sucrose synthase, putative, expressed"	Medtr5g084740.1	Sucrose synthase; N-6 Adenine-specific DNA methylase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.129204.1.S1_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (11)	scaffold_2:5545083-5545508(+) (11)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129205.1.S1_a_at	A	A1TS	POPTR_0001s39580	POPTR_0001s39580 (11)	scaffold_1:38785788-38786081(-) (11)//scaffold_1:38786064-38786113(-) (9)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129205.1.S1_at	A	A1TS	POPTR_0001s39580	POPTR_0001s39580 (10)	scaffold_1:38786166-38787981(-) (10)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129205.2.S1_a_at	A	A1TS	POPTR_0001s39580	POPTR_0001s39580 (11)	scaffold_1:38785588-38785707(-) (11)//scaffold_1:38785864-38785983(-) (11)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129205.3.A1_at	A	A1MA	POPTR_0001s39580	POPTR_0001s39580 (11)	scaffold_1:38785406-38785666(+) (11)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129212.1.S1_at	A	A1TS	POPTR_0014s04170	POPTR_0014s04170 (10)	scaffold_14:3298013-3298462(+) (10)	NA	Q8NF37	Lysophosphatidylcholine acyltransferase 1	AT1G80950.1	Phospholipid/glycerol acyltransferase family protein 	LOC_Os05g28960.1	"acyltransferase, putative, expressed"	Medtr7g127360.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.129218.1.S1_at	A	A1TS	POPTR_0012s11320	POPTR_0012s11320 (11)	scaffold_12:11810195-11810698(+) (11)	NA	Q9FLT2	Inositol polyphosphate multikinase beta	AT5G61760.1	inositol polyphosphate kinase 2 beta 	LOC_Os02g32370.1	"inositol hexaphosphate kinase, putative, expressed"	Medtr8g043170.1	Inositol polyphosphate kinase 	NA	GO:0008440|inositol trisphosphate 3-kinase activity	NA
PtpAffx.129221.1.S1_s_at	A	A1TS	POPTR_0017s11360	POPTR_0017s11360 (11)	scaffold_17:11112517-11113322(+) (11)	NA	Q54N48	Protein CLP1 homolog	AT3G04680.2	CLP-similar protein 3 	LOC_Os02g12570.1	"pre-mRNA cleavage complex II protein Clp1, putative, expressed"	Medtr1g146380.1	Pre-mRNA cleavage complex II Clp1 	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	GO:0005525|GTP binding	NA
PtpAffx.12923.1.S1_a_at	A	A1TS	POPTR_0008s10740	POPTR_0008s10740 (11)	scaffold_8:6758934-6759234(+) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT3G16910.1	acyl-activating enzyme 7 	LOC_Os03g19240.1	"AMP-binding enzyme, putative, expressed"	Medtr8g138110.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.129231.1.S1_at	A	A1MS	POPTR_0005s06750	POPTR_0005s06750 (10)	scaffold_5:4525627-4526289(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129242.1.S1_a_at	A	A1TS	POPTR_0012s03930	POPTR_0012s03930 (11)	scaffold_12:3158255-3158743(-) (11)	NA	NA	NA	AT1G48450.1	Protein of unknown function (DUF760) 	LOC_Os03g50870.1	expressed protein	Medtr4g154570.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129242.1.S1_at	A	A1TS	POPTR_0012s03930	POPTR_0012s03930 (11)	scaffold_12:3158004-3158760(-) (11)	NA	NA	NA	AT1G48450.1	Protein of unknown function (DUF760) 	LOC_Os03g50870.1	expressed protein	Medtr4g154570.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129254.1.S1_at	A	A1TS	POPTR_0019s05670	POPTR_0019s05670 (11)	scaffold_19:6038126-6038426(+) (11)	NA	Q9LJI2	Cation/calcium exchanger 3	AT5G17860.1	calcium exchanger 7 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr7g103490.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.129296.1.S1_at	A	A1TS	POPTR_0005s06180	POPTR_0005s06180 (10)	scaffold_5:4059704-4060170(+) (10)	NA	Q10058	UPF0673 membrane protein C1F5.03c	AT5G67290.1	FAD-dependent oxidoreductase family protein 	LOC_Os07g06080.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr8g087210.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.129301.1.S1_at	A	A1TS	POPTR_0007s13010	POPTR_0007s13010 (11)	scaffold_7:13207186-13207683(+) (11)	NA	O23225	U-box domain-containing protein 5	AT4G36550.1	ARM repeat superfamily protein 	LOC_Os02g47670.2	"bg55, putative, expressed"	Medtr5g020450.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.129307.1.S1_s_at	A	A1TS	POPTR_0001s00390	POPTR_0001s00390 (11)	scaffold_1:301829-303246(+) (11)	NA	Q940Y1	Oxysterol-binding protein-related protein 2A	AT4G22540.1	OSBP(oxysterol binding protein)-related protein 2A 	LOC_Os08g05870.1	"oxysterol-binding protein-related protein 6, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.129323.1.S1_s_at	A	A1TS	POPTR_0004s16580	POPTR_0004s16580 (11)	scaffold_4:17014749-17016346(+) (11)	NA	NA	NA	AT4G39140.5	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129345.1.A1_s_at	A	A1TS	POPTR_0012s06310	POPTR_0012s06310 (11)	scaffold_12:6636023-6636604(-) (11)	NA	P42744	NEDD8-activating enzyme E1 regulatory subunit	AT1G05180.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g60550.3	"ThiF family domain containing protein, putative, expressed"	Medtr4g062400.1	UBA/THIF-type NAD/FAD binding fold 	NA	GO:0003824|catalytic activity	NA
PtpAffx.129413.1.A1_at	A	A1TS	POPTR_0001s20830	POPTR_0001s20830 (10)	scaffold_1:19056973-19057502(+) (10)	NA	Q9LMR3	"Arogenate dehydrogenase 2, chloroplastic"	AT1G15710.1	prephenate dehydrogenase family protein 	LOC_Os06g49505.1	"arogenate dehydrogenase 1, chloroplast precursor, putative, expressed"	Medtr8g122040.1	"Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129455.1.A1_at	A	A1TS	POPTR_0019s14170	POPTR_0019s14170 (10)	scaffold_19:14923323-14923615(-) (10)	NA	O64477	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	AT2G19130.1	S-locus lectin protein kinase family protein 	LOC_Os07g36780.1	"S-domain receptor-like protein kinase, putative, expressed"	Medtr2g103160.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.129461.1.A1_at	A	A1TS	POPTR_0006s16330	POPTR_0006s16330 (10)	scaffold_6:14240716-14241078(-) (10)	NA	Q66GI4	"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial"	AT2G32230.1	proteinaceous RNase P 1 	LOC_Os02g17360.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g159290.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129494.1.S1_at	A	A1TS	POPTR_0010s06780	POPTR_0010s06780 (11)	scaffold_10:8048827-8049849(+) (11)	NA	NA	NA	AT5G43230.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01810.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g39490.3	expressed protein	Medtr1g090380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12950.1.A1_a_at	A	A1TS	POPTR_0002s09160	POPTR_0002s09160 (11)	scaffold_2:6488564-6488791(-) (11)	NA	Q84WN0	"Uncharacterized protein At4g37920, chloroplastic"	AT1G36320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g20110.1	expressed protein	Medtr2g034600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12950.1.A1_at	A	A1TS	POPTR_0002s09160	POPTR_0002s09160 (11)	scaffold_2:6488544-6489476(-) (11)	NA	Q84WN0	"Uncharacterized protein At4g37920, chloroplastic"	AT1G36320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g20110.1	expressed protein	Medtr2g034600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129500.1.A1_s_at	A	A1TS	POPTR_0006s26710	POPTR_0006s26710 (10)	scaffold_6:24843554-24843709(+) (10)	NA	A2AR02	Peptidyl-prolyl cis-trans isomerase G	AT4G32420.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr1g013450.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.129511.1.A1_at	A	A1TA	POPTR_0005s26760	POPTR_0005s26760 (11)	scaffold_5:24636326-24636568(+) (11)	NA	P50134	Ornithine decarboxylase	AT3G14390.1	Pyridoxal-dependent decarboxylase family protein 	LOC_Os09g37120.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr3g157420.1	Orn/DAP/Arg decarboxylase 2 	NA	GO:0003824|catalytic activity	NA
PtpAffx.129522.1.A1_at	A	A1TS	POPTR_0006s05210	POPTR_0006s05210 (11)	scaffold_6:3669176-3669612(-) (11)	NA	Q9LVJ7	Nuclear transcription factor Y subunit A-6	AT3G14020.1	"nuclear factor Y, subunit A6 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.129554.1.A1_at	A	A1TS	POPTR_0013s06900	POPTR_0013s06900 (11)	scaffold_13:5604523-5605036(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g43075.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129568.2.A1_a_at	A	A1TS	POPTR_0001s38570	POPTR_0001s38570 (11)	scaffold_1:37773270-37776404(-) (11)	NA	Q9C5J6	tRNA dimethylallyltransferase 9	AT5G20040.1	isopentenyltransferase 9 	LOC_Os06g51350.1	"IPP transferase, putative, expressed"	Medtr4g073150.1	Isopentenyl transferase-like 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.129589.1.A1_at	A	A1TS	POPTR_0005s01420	POPTR_0005s01420 (9)	scaffold_5:935931-936024(+) (9)	NA	Q5R478	AP-3 complex subunit mu-1	AT1G56590.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os05g31780.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g034870.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.129590.1.A1_at	A	A1TS	POPTR_0018s06820	POPTR_0018s06820 (9)	scaffold_18:6873269-6873370(+) (9)	NA	Q8VYZ3	Probable pectinesterase 53	AT5G19730.1	Pectin lyase-like superfamily protein 	LOC_Os01g53990.1	"pectinesterase, putative, expressed"	Medtr4g160050.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.129594.1.S1_at	A	A1TS	POPTR_0011s15460	POPTR_0011s15460 (10)	scaffold_11:17550458-17550902(+) (10)	NA	Q9MAP8	"Probable beta-1,3-galactosyltransferase 6"	AT1G32930.1	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.129613.1.S1_at	A	A1TS	POPTR_0005s16950	POPTR_0005s16950 (10)	scaffold_5:13950756-13951246(-) (10)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT5G65160.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129632.1.S1_at	A	A1TS	POPTR_0022s00780	POPTR_0022s00780 (9)	scaffold_22:386599-386898(+) (9)	NA	NA	NA	AT1G58070.1	unknown protein; Has 286 Blast hits to 266 proteins in 81 species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi - 19; Plants - 78; Viruses - 4; Other Eukaryotes - 68 (source: NCBI BLink). 	LOC_Os11g09040.1	expressed protein	Medtr2g005670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129645.1.S1_at	A	A1TS	POPTR_0005s24790	POPTR_0005s24790 (10)	scaffold_5:23236270-23237580(-) (10)	NA	P04844	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	AT4G21150.3	ribophorin II (RPN2) family protein 	LOC_Os01g68324.2	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0071212|subsynaptic reticulum||GO:0008250|oligosaccharyltransferase complex
PtpAffx.129663.1.S1_at	A	A1MS	POPTR_0009s11100	POPTR_0009s11100 (9)	scaffold_9:9331313-9331848(-) (9)	NA	P24397	Hyoscyamine 6-dioxygenase	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.129707.1.S1_at	A	A1TS	POPTR_0021s00790	POPTR_0021s00790 (10)	scaffold_21:456745-456848(+) (10)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT1G61900.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1). 	LOC_Os07g01240.1	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129707.1.S1_s_at	A	A1TS	POPTR_0021s00790	POPTR_0021s00790 (11)	scaffold_21:458087-458385(+) (11)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT1G61900.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1). 	LOC_Os07g01240.1	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129717.1.S1_s_at	A	A1TS	POPTR_0001s08740	POPTR_0001s08740 (11)	scaffold_1:6677729-6678090(-) (11)	NA	Q9CAN9	Ethylene-responsive transcription factor ERF026	AT5G52020.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g73770.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr1g129460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.129726.1.S1_a_at	A	A1TS	POPTR_0006s14200	POPTR_0006s14200 (11)	scaffold_6:11517629-11518087(+) (11)	NA	Q5RJV0	"Ubiquinone biosynthesis protein COQ9, mitochondrial"	AT1G19140.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 748 Blast hits to 748 proteins in 260 species: Archae - 0; Bacteria - 218; Metazoa - 126; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). "	LOC_Os03g29180.1	"ubiquinone biosynthesis protein COQ9, mitochondrial precursor, putative, expressed"	Medtr8g132600.1	RpsU-divergently transcribed 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129726.2.S1_at	A	A1MS	POPTR_0006s14200	POPTR_0006s14200 (10)	scaffold_6:11517429-11518055(+) (10)	NA	Q5RJV0	"Ubiquinone biosynthesis protein COQ9, mitochondrial"	AT1G19140.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 748 Blast hits to 748 proteins in 260 species: Archae - 0; Bacteria - 218; Metazoa - 126; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). "	LOC_Os03g29180.1	"ubiquinone biosynthesis protein COQ9, mitochondrial precursor, putative, expressed"	Medtr8g132600.1	RpsU-divergently transcribed 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129727.1.S1_s_at	A	A1TS	POPTR_0011s00640	POPTR_0011s00640 (11)	scaffold_11:289390-289572(-) (11)	NA	Q8C147	Dedicator of cytokinesis protein 8	AT4G16340.1	guanyl-nucleotide exchange factors;GTPase binding;GTP binding 	LOC_Os03g21080.1	"guanine nucleotide exchange factor, putative, expressed"	Medtr8g065690.1	Dedicator of cytokinesis 	NA	GO:0005085|guanyl-nucleotide exchange factor activity||GO:0051020|GTPase binding||GO:0005525|GTP binding	NA
PtpAffx.129732.1.S1_s_at	A	A1TS	POPTR_0005s14560	POPTR_0005s14560 (11)	scaffold_5:11605969-11607543(+) (11)	NA	NA	NA	AT1G27700.1	Syntaxin/t-SNARE family protein 	LOC_Os05g37150.2	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr1g023580.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.129734.1.S1_at	A	A1TS	POPTR_0006s23610	POPTR_0006s23610 (11)	scaffold_6:22322798-22325239(+) (11)	NA	Q40224	Guanine nucleotide-binding protein alpha-1 subunit	AT2G26300.1	G protein alpha subunit 1 	LOC_Os05g26890.1	"G-protein alpha subunit, putative, expressed"	Medtr1g019860.1	"Calcium-binding EF-hand; Plant G-protein, alpha subunit "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.129758.1.S1_s_at	A	A1TS	POPTR_0002s25420	POPTR_0002s25420 (11)	scaffold_2:22489288-22490542(-) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.129776.1.S1_at	A	A1TS	POPTR_0005s03850	POPTR_0005s03850 (11)	scaffold_5:2563723-2564053(-) (11)	NA	O60291	E3 ubiquitin-protein ligase MGRN1	AT3G06140.1	RING/U-box superfamily protein 	LOC_Os03g15000.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129796.1.S1_at	A	A1TS	POPTR_0006s01660	POPTR_0006s01660 (10)	scaffold_6:1020202-1020338(+) (10)	NA	Q8S5M8	Putative yippee-like protein Os10g0369500	AT3G08990.2	Yippee family putative zinc-binding protein 	LOC_Os10g22410.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129871.1.S1_s_at	A	A1TS	POPTR_0003s03100	POPTR_0003s03100 (11)	scaffold_3:3455465-3458001(-) (11)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129898.1.S1_at	A	A2TS	POPTR_0007s02820	POPTR_0007s02820 (11)//POPTR_0995s00210 (11)	scaffold_7:1637238-1637656(-) (11)//scaffold_995:3095-3512(-) (11)	NA	NA	NA	AT2G32280.1	Protein of unknown function (DUF1218) 	LOC_Os07g36110.2	expressed protein	Medtr2g103410.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129936.1.S1_at	A	A1TS	POPTR_0016s01150	POPTR_0016s01150 (11)	scaffold_16:472144-472934(+) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g105300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.12994.1.A1_at	A	A1TS	POPTR_0002s08790	POPTR_0002s08790 (11)	scaffold_2:6182655-6182932(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G38131.1	O-fucosyltransferase family protein 	LOC_Os12g07540.1	"growth regulator related protein, putative, expressed"	Medtr5g065110.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129941.1.S1_s_at	A	A1TS	POPTR_0008s16660	POPTR_0008s16660 (11)	scaffold_8:11205377-11205932(+) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT3G23250.1	myb domain protein 15 	LOC_Os02g41510.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129950.1.S1_s_at	A	A1TS	POPTR_0007s11130	POPTR_0007s11130 (11)	scaffold_7:11404769-11404947(+) (11)	NA	Q9ZQE6	Calmodulin-like protein 1	AT2G15680.1	Calcium-binding EF-hand family protein 	LOC_Os01g72100.1	"OsCML10 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g017520.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129961.1.S1_at	A	A1TS	POPTR_0008s17970	POPTR_0008s17970 (11)	scaffold_8:12065623-12066258(+) (11)	NA	Q9LU93	Mitotic spindle checkpoint protein MAD2	AT3G25980.1	DNA-binding HORMA family protein 	LOC_Os04g40940.1	"mitotic spindle checkpoint protein MAD2, putative, expressed"	Medtr3g103180.1	DNA-binding HORMA 	GO:0007067|mitosis	NA	NA
PtpAffx.129974.1.S1_s_at	A	A1TS	POPTR_0011s11370	POPTR_0011s11370 (11)	scaffold_11:14106455-14106826(+) (11)	NA	Q9M6E8	"9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic"	AT3G14440.1	nine-cis-epoxycarotenoid dioxygenase 3 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129984.1.S1_s_at	A	A1TS	POPTR_0002s25160	POPTR_0002s25160 (11)	scaffold_2:22348732-22348954(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g045980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130008.1.S1_a_at	A	A2TS	POPTR_0002s05080	POPTR_0002s05080 (11)//POPTR_0005s23450 (11)	scaffold_2:3288109-3288560(+) (11)//scaffold_5:22211203-22211651(-) (11)	NA	Q54W07	Probable serine/threonine-protein kinase BUD32 homolog	AT5G26110.1	Protein kinase superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130008.1.S1_at	A	A1TS	POPTR_0002s05080	POPTR_0002s05080 (11)	scaffold_2:3287736-3289011(+) (11)	NA	Q54W07	Probable serine/threonine-protein kinase BUD32 homolog	AT5G26110.1	Protein kinase superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130008.2.S1_at	A	A1TS	POPTR_0005s23450	POPTR_0005s23450 (11)	scaffold_5:22210752-22211805(-) (11)	NA	Q54W07	Probable serine/threonine-protein kinase BUD32 homolog	AT5G26110.1	Protein kinase superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13003.1.S1_at	A	A1TS	POPTR_0005s10170	POPTR_0005s10170 (9)	scaffold_5:7261485-7261899(-) (9)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT2G17270.1	phosphate transporter 3;3 	LOC_Os09g38100.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr5g024710.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130071.1.S1_at	A	A1TS	POPTR_0006s12790	POPTR_0006s12790 (10)	scaffold_6:9956381-9957426(-) (10)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT3G09830.2	Protein kinase superfamily protein 	LOC_Os02g57420.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr1g076510.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.130100.1.A1_s_at	A	A1TS	POPTR_0009s15710	POPTR_0009s15710 (11)	scaffold_9:12086337-12089222(-) (11)	NA	O93309	Structural maintenance of chromosomes protein 3	AT2G27170.2	Structural maintenance of chromosomes (SMC) family protein 	LOC_Os02g04050.1	"chromosome segregation protein, putative, expressed"	Medtr5g094200.1	"condensin complex component SMC3, related "	GO:0016032|viral reproduction||GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane||GO:0005694|chromosome
PtpAffx.13014.1.S1_a_at	A	A1TS	POPTR_0018s06790	POPTR_0018s06790 (10)	scaffold_18:6827698-6829046(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G29230.1	NAC domain containing protein 75 	LOC_Os01g09550.1	"no apical meristem protein, putative, expressed"	Medtr4g160220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.13016.1.S1_s_at	A	A2TS	POPTR_0005s01380	POPTR_0005s01380 (11)//POPTR_0013s00770 (11)	scaffold_13:397431-398970(+) (11)//scaffold_5:919585-921252(+) (11)	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os01g22870.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
PtpAffx.13016.2.S1_s_at	A	A1TS	POPTR_0006s04570	POPTR_0006s04570 (11)	scaffold_6:3111597-3112533(-) (11)	NA	Q8RXS6	DNA helicase INO80 complex homolog 1	AT3G57300.1	INO80 ortholog 	LOC_Os03g22900.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.130193.1.A1_s_at	A	A1TS	POPTR_0018s00510	POPTR_0018s00510 (11)	scaffold_18:450165-451197(-) (11)	NA	Q94FY7	"Tocopherol cyclase, chloroplastic"	AT4G32770.1	"tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) "	LOC_Os02g17650.1	"tocopherol cyclase, chloroplast precursor, putative, expressed"	AC225517_3.1	"Tocopherol cyclase, chloroplast precursor, putative AC225517.6 12507-17093 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1302.4.A1_at	A	A1TS	POPTR_0014s10440	POPTR_0014s10440 (11)	scaffold_14:7800675-7800997(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130232.1.A1_s_at	A	A1TS	POPTR_0001s01170	POPTR_0001s01170 (11)	scaffold_1:921870-922631(-) (11)	NA	Q9F234	Alpha-glucosidase 2	AT3G23640.2	heteroglycan glucosidase 1 	LOC_Os07g23880.1	"glycosyl hydrolase, family 31, putative, expressed"	Medtr5g026760.1	"Vitamin K-dependent carboxylation/gamma-carboxyglutamic region; Glycoside hydrolase, family 31 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.130241.1.S1_s_at	A	A1TS	POPTR_0007s06620	POPTR_0007s06620 (11)	scaffold_7:5035653-5038172(+) (11)	NA	Q9LV93	ABC transporter F family member 5	AT5G64840.1	general control non-repressible 5 	LOC_Os11g39020.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g144690.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.130260.1.S1_s_at	A	A1TS	POPTR_0005s16110	POPTR_0005s16110 (11)	scaffold_5:12763594-12763948(+) (11)	NA	Q920N2	Biotin--protein ligase	AT2G25710.2	holocarboxylase synthase 1 	LOC_Os02g07040.2	"biotin--protein ligase, putative, expressed"	Medtr3g098110.2	Biotin--acetyl-CoA-carboxylase ligase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0003824|catalytic activity	NA
PtpAffx.130267.1.S1_at	A	A1TS	POPTR_0001s43950	POPTR_0001s43950 (10)	scaffold_1:44360337-44360883(-) (11)	NA	Q8GXT3	Transcription factor bHLH123	AT3G20640.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g42180.1	"ethylene-responsive protein related, putative"	Medtr2g096070.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130278.1.S1_at	A	A1TS	POPTR_0005s23180	POPTR_0005s23180 (11)	scaffold_5:22011749-22012166(+) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G63180.1	TIC-like 	LOC_Os07g38360.2	expressed protein	Medtr1g086320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1303.1.S1_a_at	A	A1TS	POPTR_0004s08320	POPTR_0004s08320 (11)	scaffold_4:6841074-6841263(+) (11)	POPTR_0017s02620 (8)	Q56Y85	Methionine aminopeptidase 2B	AT3G59990.4	methionine aminopeptidase 2B 	LOC_Os12g43370.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.1303.1.S1_at	A	A1TS	POPTR_0004s08320	POPTR_0004s08320 (11)	scaffold_4:6840213-6841060(+) (11)	POPTR_0017s02620 (6)	Q56Y85	Methionine aminopeptidase 2B	AT3G59990.4	methionine aminopeptidase 2B 	LOC_Os12g43370.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.1303.2.S1_at	A	A1MS	POPTR_0004s08320	POPTR_0004s08320 (11)	scaffold_4:6840965-6841237(+) (11)	NA	Q56Y85	Methionine aminopeptidase 2B	AT3G59990.4	methionine aminopeptidase 2B 	LOC_Os12g43370.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.130300.1.S1_at	A	A1TS	POPTR_0010s24900	POPTR_0010s24900 (10)	scaffold_10:20860184-20860608(-) (10)	NA	NA	NA	AT5G04840.1	bZIP protein 	LOC_Os02g33560.1	expressed protein	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13031.1.A1_at	A	A1TS	POPTR_0003s17790	POPTR_0003s17790 (11)	scaffold_3:17075937-17076435(+) (11)	NA	Q0V7T5	Probable receptor-like protein kinase At1g80640	AT2G25220.1	Protein kinase superfamily protein 	LOC_Os02g08530.1	"protein kinase family protein, putative, expressed"	Medtr3g137950.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.130313.1.S1_at	A	A1TS	POPTR_0010s14070	POPTR_0010s14070 (9)	scaffold_10:13772267-13772982(+) (10)	NA	Q6DYE4	"Uncharacterized protein At1g26090, chloroplastic"	AT1G26090.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g48130.1	"uncharacterized protein At1g26090, chloroplast precursor, putative, expressed"	Medtr5g069480.1	"Uncharacterized protein At1g26090, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130346.1.S1_at	A	A1TS	POPTR_0008s04320	POPTR_0008s04320 (11)	scaffold_8:2413383-2414988(-) (11)	NA	Q8RWV3	Cyclin-L1-1	AT2G26430.1	arginine-rich cyclin 1 	LOC_Os01g27940.1	"cyclin-L1-1, putative, expressed"	Medtr5g068200.1	"Immunoglobulin/major histocompatibility complex; Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130446.1.S1_at	A	A1TS	POPTR_0017s06520	POPTR_0017s06520 (11)	scaffold_17:4969877-4970314(+) (11)	NA	NA	NA	AT2G32360.1	Ubiquitin-like superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13048.1.S1_a_at	A	A1TS	POPTR_0009s02820	POPTR_0009s02820 (10)	scaffold_9:3575558-3576366(-) (10)	NA	Q64311	Protein N-terminal asparagine amidohydrolase	AT2G44420.1	protein N-terminal asparagine amidohydrolase family protein 	LOC_Os06g41390.2	"N-terminal asparagine amidohydrolase, putative, expressed"	Medtr2g071460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13048.2.S1_a_at	A	A1TS	POPTR_0009s02820	POPTR_0009s02820 (11)	scaffold_9:3577731-3578801(-) (11)	NA	Q64311	Protein N-terminal asparagine amidohydrolase	AT2G44420.1	protein N-terminal asparagine amidohydrolase family protein 	LOC_Os06g41390.2	"N-terminal asparagine amidohydrolase, putative, expressed"	Medtr2g071460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13051.1.A1_at	A	A1TS	POPTR_0013s07770	POPTR_0013s07770 (11)	scaffold_13:6617268-6617526(+) (11)	NA	A3KPA3	N-acetyltransferase 15	AT5G16800.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g46700.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g007510.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.13051.2.A1_a_at	A	A1TS	POPTR_0013s07770	POPTR_0013s07770 (11)	scaffold_13:6616982-6617181(+) (11)	NA	A3KPA3	N-acetyltransferase 15	AT5G16800.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g46700.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g007510.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.13051.2.A1_at	A	A1MS	POPTR_0013s07770	POPTR_0013s07770 (10)	scaffold_13:6616864-6617199(+) (10)	NA	A3KPA3	N-acetyltransferase 15	AT5G16800.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g46700.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g007510.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.130516.1.S1_at	A	A1TS	POPTR_0007s06310	POPTR_0007s06310 (11)	scaffold_7:4469689-4476655(+) (11)	NA	P24465	Cytochrome P450 71A1	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26970.1	"retrotransposon protein, putative, unclassified"	Medtr2g078060.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.130517.1.S1_at	A	A1TS	POPTR_0014s04020	POPTR_0014s04020 (11)	scaffold_14:3194945-3195423(+) (11)	NA	P28493	Pathogenesis-related protein 5	AT1G75030.1	thaumatin-like protein 3 	LOC_Os03g13070.1	thaumatin family domain containing protein	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130540.1.S1_at	A	A1TS	POPTR_0004s04400	POPTR_0004s04400 (11)	scaffold_4:3147395-3147645(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130549.1.S1_at	A	A1MS	POPTR_0004s19420	POPTR_0004s19420 (11)	scaffold_4:19264525-19265078(+) (11)	NA	O23006	LysM domain-containing GPI-anchored protein 2	AT2G17120.1	lysm domain GPI-anchored protein 2 precursor 	LOC_Os09g37600.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	AC235671_7.1	Peptidoglycan-binding LysM AC235671.2 31615-27432 E EGN_Mt090430 200	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.130554.1.S1_at	A	A1TS	POPTR_0005s24540	POPTR_0005s24540 (11)	scaffold_5:23061108-23062287(+) (11)	NA	Q91W34	UPF0420 protein C16orf58 homolog	AT2G31190.2	"Protein of unknown function, DUF647 "	LOC_Os04g43690.1	"DUF647 domain containing protein, putative, expressed"	Medtr4g106950.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130564.1.S1_s_at	A	A1TS	POPTR_0014s00850	POPTR_0014s00850 (11)	scaffold_14:788423-788848(-) (11)	NA	NA	NA	AT3G49800.1	BSD domain-containing protein 	LOC_Os05g43520.2	"BSD, putative, expressed"	Medtr5g015300.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130568.1.S1_at	A	A1TS	POPTR_0004s19510	POPTR_0004s19510 (11)	scaffold_4:19335055-19335233(-) (11)	NA	NA	NA	AT2G27590.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g63950.1	expressed protein	Medtr4g069890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130568.1.S1_s_at	A	A1TS	POPTR_0004s19510	POPTR_0004s19510 (11)	scaffold_4:19333066-19335062(-) (11)	NA	NA	NA	AT2G27590.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g63950.1	expressed protein	Medtr4g069890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130574.1.S1_at	A	A1TS	POPTR_0014s03460	POPTR_0014s03460 (11)	scaffold_14:2786889-2787971(+) (11)	NA	NA	NA	AT5G06430.1	Thioredoxin superfamily protein 	LOC_Os11g38040.1	expressed protein	Medtr1g089640.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13059.1.S1_s_at	A	A1TS	POPTR_0012s06735	POPTR_0012s06735 (11)	scaffold_12:7181705-7182250(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130614.1.S1_s_at	A	A1TS	POPTR_0007s13820	POPTR_0007s13820 (11)	scaffold_7:13848364-13849631(-) (11)	NA	Q9NQE7	Thymus-specific serine protease	AT4G36195.3	Serine carboxypeptidase S28 family protein 	LOC_Os10g36760.1	"OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr8g090320.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.130615.1.S1_at	A	A1TS	POPTR_0012s08870	POPTR_0012s08870 (11)	scaffold_12:9931647-9933870(-) (11)	NA	P82413	"50S ribosomal protein L19, chloroplastic"	AT5G11750.1	Ribosomal protein L19 family protein 	LOC_Os02g11030.1	"50S ribosomal protein L19, chloroplast precursor, putative, expressed"	Medtr5g013420.1	Ribosomal protein L19 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.13062.1.A1_s_at	A	A1TS	POPTR_0018s13070	POPTR_0018s13070 (11)	scaffold_18:13521189-13521681(-) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.13062.4.S1_a_at	A	A2TS	POPTR_0006s06770	POPTR_0018s13070 (11)//POPTR_0006s06770 (11)	scaffold_18:13523641-13523831(-) (11)//scaffold_6:4904886-4905076(-) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.13062.4.S1_at	A	A1TS	POPTR_0006s06770	POPTR_0006s06770 (11)	scaffold_6:4904537-4905087(-) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.130623.1.S1_at	A	A2TS	POPTR_0012s04670	POPTR_0012s04670 (11)//POPTR_0015s04280 (9)	scaffold_12:4016261-4017624(+) (11)//scaffold_15:4336018-4336742(-) (9)	NA	Q9LV33	Beta-glucosidase 44	AT3G18080.1	B-S glucosidase 44 	LOC_Os01g32364.1	"Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.130633.1.S1_at	A	A1TS	POPTR_0010s00800	POPTR_0010s00800 (11)	scaffold_10:509879-511749(+) (11)	POPTR_0008s23220 (8)	Q9Y4D2	Sn1-specific diacylglycerol lipase alpha	AT4G16070.1	"Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 "	LOC_Os01g20840.1	"lipase class 3 family protein, putative, expressed"	Medtr8g025380.1	"lipase class 3 family protein, related "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.130634.1.S1_at	A	A1TS	POPTR_0002s03290	POPTR_0002s03290 (11)	scaffold_2:2017862-2019466(+) (11)	NA	NA	NA	AT1G19690.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g15660.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g028880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130641.1.S1_s_at	A	A1TS	POPTR_0009s03110	POPTR_0009s03110 (11)	scaffold_9:3799788-3800456(+) (11)	NA	O23826	125 kDa kinesin-related protein	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.130644.1.S1_at	A	A1TS	POPTR_0001s12970	POPTR_0001s12970 (11)	scaffold_1:10057399-10058228(-) (11)	NA	O23627	"Glycyl-tRNA synthetase 1, mitochondrial"	AT1G29880.1	glycyl-tRNA synthetase / glycine--tRNA ligase 	LOC_Os08g42560.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr3g137760.1	"Glycyl-tRNA synthetase 1, mitochondrial precursor, putative "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.130672.1.S1_at	A	A1TS	POPTR_0001s03110	POPTR_0001s03110 (11)	scaffold_1:2456204-2456636(+) (11)	NA	Q9FJR0	Regulator of nonsense transcripts 1 homolog	AT5G47010.1	"RNA helicase, putative "	LOC_Os07g31340.1	"regulator of nonsense transcripts 1, putative, expressed"	Medtr5g014030.1	"Type III restriction enzyme, res subunit "	"GO:0000184|""nuclear-transcribed mRNA catabolic process, nonsense-mediated decay""||GO:0044265|cellular macromolecule catabolic process"	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0008270|zinc ion binding	GO:0005737|cytoplasm
PtpAffx.130675.1.S1_s_at	A	A1TS	POPTR_0015s10810	POPTR_0015s10810 (11)	scaffold_15:11610329-11610847(-) (11)	NA	Q9BRS2	Serine/threonine-protein kinase RIO1	AT5G37350.1	Serine/threonine-protein kinase Rio1 	LOC_Os07g06820.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr7g107800.1	"Tyrosine protein kinase, active site "	NA	GO:0003824|catalytic activity||GO:0005524|ATP binding	NA
PtpAffx.130675.2.S1_s_at	A	A1TS	POPTR_0015s10810	POPTR_0015s10810 (11)	scaffold_15:11608557-11609700(-) (11)	NA	Q9BRS2	Serine/threonine-protein kinase RIO1	AT5G37350.1	Serine/threonine-protein kinase Rio1 	LOC_Os07g06820.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr7g107800.1	"Tyrosine protein kinase, active site "	NA	GO:0003824|catalytic activity||GO:0005524|ATP binding	NA
PtpAffx.130676.1.S1_s_at	A	A1TS	POPTR_0019s11080	POPTR_0019s11080 (11)	scaffold_19:12474922-12475181(+) (11)	NA	NA	NA	AT1G14060.1	GCK domain-containing protein 	LOC_Os07g06460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130684.1.S1_at	A	A1TS	POPTR_0003s18860	POPTR_0003s18860 (9)	scaffold_3:17767851-17768662(+) (9)	NA	NA	NA	AT3G54360.1	zinc ion binding 	LOC_Os01g01420.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1307.1.S1_at	A	A1TS	POPTR_0001s09600	POPTR_0001s09600 (9)	scaffold_1:7305970-7306486(-) (9)	POPTR_0743s00200 (8)	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.130703.1.S1_at	A	A1TS	POPTR_0018s14400	POPTR_0018s14400 (11)	scaffold_18:14615759-14616864(-) (11)	NA	B4SA76	tRNA pseudouridine synthase A	AT5G35400.1	Pseudouridine synthase family protein 	LOC_Os06g45250.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr4g161180.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.130717.1.S1_at	A	A1TS	POPTR_0007s06510	POPTR_0007s06510 (9)	scaffold_7:4893406-4894832(+) (9)	NA	Q9SIZ8	E3 ubiquitin-protein ligase RKP	AT2G22010.1	related to KPC1 	LOC_Os07g43380.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g144940.1	"Zinc finger, RING-type; B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130766.2.S1_a_at	A	A1TS	POPTR_0001s47510	POPTR_0001s47510 (11)	scaffold_1:47670692-47671555(-) (11)	NA	Q52K82	Probable calcium-binding protein CML21	AT4G26470.1	Calcium-binding EF-hand family protein 	LOC_Os06g40720.1	"EF hand family protein, putative, expressed"	Medtr8g083980.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130782.1.S1_at	A	A1TS	POPTR_0006s04660	POPTR_0006s04660 (9)	scaffold_6:3201001-3203761(+) (9)	NA	Q8RY99	"DNA repair protein recA homolog 2, mitochondrial"	AT3G10140.1	RECA homolog 3 	LOC_Os01g71690.2	"recA protein, expressed"	Medtr7g108080.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130783.2.S1_s_at	A	A6TS	POPTR_0014s03250	POPTR_0014s03280 (11)//POPTR_0014s03320 (11)//POPTR_0014s03330 (11)//POPTR_0014s03250 (11)//POPTR_0014s03260 (11)//POPTR_0014s03290 (10)	scaffold_14:2587024-2587393(+) (11)//scaffold_14:2591083-2591452(+) (11)//scaffold_14:2606820-2607189(+) (11)//scaffold_14:2610009-2610378(+) (11)//scaffold_14:2633589-2633956(+) (11)//scaffold_14:2646621-2646990(+) (10)//scaffold_14:2664343-2664712(+) (11)//scaffold_14:2674601-2674971(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.130783.3.A1_at	A	A3MA	POPTR_0014s03250	POPTR_0014s03280 (10)//POPTR_0014s03250 (10)//POPTR_0014s03290 (9)	scaffold_14:2587280-2587807(-) (10)//scaffold_14:2607076-2610798(-) (10)//scaffold_14:2633843-2634376(-) (11)//scaffold_14:2646877-2647406(-) (9)	POPTR_0014s03320 (8)//POPTR_0014s03260 (8)//POPTR_0014s03330 (7)	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.1308.1.A1_at	A	A1TS	POPTR_0003s08460	POPTR_0003s08460 (11)	scaffold_3:9875550-9876076(-) (11)	NA	Q9FJR0	Regulator of nonsense transcripts 1 homolog	AT5G47010.1	"RNA helicase, putative "	LOC_Os07g31340.1	"regulator of nonsense transcripts 1, putative, expressed"	Medtr5g014030.1	"Type III restriction enzyme, res subunit "	"GO:0000184|""nuclear-transcribed mRNA catabolic process, nonsense-mediated decay""||GO:0044265|cellular macromolecule catabolic process"	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0008270|zinc ion binding	GO:0005737|cytoplasm
PtpAffx.130829.1.S1_at	A	A1TS	POPTR_0009s09780	POPTR_0009s09780 (10)	scaffold_9:8568436-8568861(+) (10)	NA	Q71DJ5	Triacylglycerol lipase 1	AT2G15230.1	lipase 1 	LOC_Os09g01590.1	"triacylglycerol lipase 1 precursor, putative, expressed"	Medtr5g092310.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.130839.1.S1_at	A	A1TS	POPTR_0010s20590	POPTR_0010s20590 (11)	scaffold_10:18111385-18112598(+) (11)	NA	O04015	Delta-1-pyrroline-5-carboxylate synthase	AT3G55610.1	delta 1-pyrroline-5-carboxylate synthase 2 	LOC_Os05g38150.2	"amino acid kinase, putative, expressed"	Medtr3g092110.1	Gamma-glutamyl phosphate reductase GPR; Glutamate 5-kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.130842.1.S1_at	A	A1TS	POPTR_0018s02590	POPTR_0018s02590 (11)	scaffold_18:2345651-2348590(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT4G31820.1	Phototropic-responsive NPH3 family protein 	LOC_Os09g25330.1	"BTBN19 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr1g016830.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.130846.1.S1_at	A	A1TS	POPTR_0018s00700	POPTR_0018s00700 (11)	scaffold_18:609529-610066(-) (11)	NA	Q9C591	Ethylene-responsive transcription factor ERF016	AT5G21960.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g09790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr3g138910.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.130846.2.S1_at	A	A1TS	POPTR_0006s14110	POPTR_0006s14110 (11)	scaffold_6:11415968-11416337(+) (11)	NA	Q9C591	Ethylene-responsive transcription factor ERF016	AT5G21960.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g09717.1	"ethylene-responsive transcription factor, putative"	Medtr3g138910.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.130887.1.S1_at	A	A1TS	POPTR_0002s19900	POPTR_0002s19900 (10)	scaffold_2:15837311-15838594(-) (10)	NA	NA	NA	AT1G02660.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g15000.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.130895.1.S1_at	A	A1TS	POPTR_0006s02420	POPTR_0006s02420 (10)	scaffold_6:1587754-1589321(+) (10)	NA	Q5BJZ6	UPF0586 protein C9orf41 homolog	AT2G32170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g43560.1	"AGAP007115-PA, putative, expressed"	AC233673_1.1	hypothetical protein AC233673.1 745-2078 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130908.2.A1_at	A	A1TS	POPTR_0010s10020	POPTR_0010s10020 (11)	scaffold_10:10622537-10622999(+) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.130908.2.A1_s_at	A	A1TS	POPTR_0010s10020	POPTR_0010s10020 (11)	scaffold_10:10622610-10622930(+) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.130908.3.S1_at	A	A1TS	POPTR_0001s10410	POPTR_0001s10410 (11)	scaffold_1:8088860-8089559(+) (11)	NA	Q9T012	High mobility group B protein 13	AT4G11080.1	HMG (high mobility group) box protein 	LOC_Os02g15810.1	"HMG1/2, putative, expressed"	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.13092.1.S1_a_at	A	A1TS	POPTR_0015s06230	POPTR_0015s06230 (11)	scaffold_15:6589252-6589343(+) (11)	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT5G23060.1	calcium sensing receptor 	LOC_Os02g49680.1	"arsenate reductase, putative, expressed"	Medtr8g115590.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13092.1.S1_at	A	A1TS	POPTR_0015s06230	POPTR_0015s06230 (11)	scaffold_15:6587500-6589235(+) (11)	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT5G23060.1	calcium sensing receptor 	LOC_Os02g49680.1	"arsenate reductase, putative, expressed"	Medtr8g115590.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130922.1.S1_s_at	A	A1TS	POPTR_0006s11590	POPTR_0006s11590 (10)	scaffold_6:8805072-8805842(+) (10)	NA	Q2PCF1	Pleiotropic drug resistance protein 2	AT1G66950.1	pleiotropic drug resistance 11 	LOC_Os01g42410.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr7g126900.1	PAK-box/P21-Rho-binding; AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.130948.1.S1_at	A	A1TS	POPTR_0012s14030	POPTR_0012s14030 (9)	scaffold_12:14021752-14022181(+) (9)	NA	Q9SM59	"Phosphoglucomutase, chloroplastic"	AT5G51820.1	phosphoglucomutase 	LOC_Os10g11140.1	"phosphoglucomutase, putative, expressed"	Medtr1g129920.2	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.130962.1.A1_s_at	A	A1TS	POPTR_0009s04690	POPTR_0009s04690 (11)	scaffold_9:4966801-4967012(+) (11)	NA	Q9SS80	"UPF0503 protein At3g09070, chloroplastic"	AT5G58930.1	Protein of unknown function (DUF740) 	LOC_Os05g37800.1	"DUF740 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130966.1.S1_s_at	A	A1TS	POPTR_0001s23210	POPTR_0001s23210 (11)	scaffold_1:22491576-22492080(-) (11)	NA	P44747	Tyrosine-specific transport protein 2	AT5G19500.1	Tryptophan/tyrosine permease 	LOC_Os07g46780.1	"tyrosine-specific transport protein, putative, expressed"	Medtr5g095820.1	Aromatic amino acid permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130974.1.S1_at	A	A1TS	POPTR_0005s14730	POPTR_0005s14730 (9)	scaffold_5:11706159-11706835(-) (9)	NA	C5CG19	Methionyl-tRNA formyltransferase	AT1G66520.1	"formyltransferase, putative "	LOC_Os01g49330.1	"formyl transferase, putative, expressed"	NA	NA	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.130982.1.S1_s_at	A	A1TS	POPTR_0001s44610	POPTR_0001s44610 (11)	scaffold_1:45077357-45077619(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.130992.1.S1_s_at	A	A1TS	POPTR_0004s13480	POPTR_0004s13480 (11)	scaffold_4:13633822-13634994(+) (11)	NA	Q32RS0	Pyruvate dehydrogenase E1 component subunit beta	AT2G34590.1	Transketolase family protein 	LOC_Os12g42230.1	"transketolase, putative, expressed"	Medtr3g115120.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.131.1.S1_a_at	A	A2TS	POPTR_0004s21210	POPTR_0004s21210 (11)//POPTR_0009s16490 (11)	scaffold_4:20442604-20442640(+) (11)//scaffold_9:12514749-12514785(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT3G52660.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g009690.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.131.3.S1_a_at	A	A1TS	POPTR_0009s16490	POPTR_0009s16490 (11)	scaffold_9:12515476-12515649(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT4G00830.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g009690.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.131.4.S1_at	A	A1MS	POPTR_0004s21210	POPTR_0004s21210 (11)	scaffold_4:20443045-20443445(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT3G52660.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g009690.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1310.2.A1_a_at	A	A1TS	POPTR_0006s24120	POPTR_0006s24120 (11)	scaffold_6:22789269-22790884(-) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G33080.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g139660.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1310.2.A1_at	A	A1TS	POPTR_0006s24120	POPTR_0006s24120 (11)	scaffold_6:22788946-22791082(-) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G33080.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g139660.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13101.2.A1_at	A	A1TS	POPTR_0010s24840	POPTR_0010s24840 (11)	scaffold_10:20836155-20838160(+) (11)	NA	Q9CAF2	"Nudix hydrolase 26, chloroplastic"	AT3G10620.1	nudix hydrolase homolog 26 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.13101.3.S1_a_at	A	A1TS	POPTR_0008s01880	POPTR_0008s01880 (11)	scaffold_8:905621-907609(+) (11)	NA	Q9CAF2	"Nudix hydrolase 26, chloroplastic"	AT3G10620.1	nudix hydrolase homolog 26 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.131010.1.S1_s_at	A	A1TS	POPTR_0012s14430	POPTR_0012s14430 (10)	scaffold_12:14325610-14326768(-) (10)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G51560.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.13102.1.S1_s_at	A	A1TS	POPTR_0006s15980	POPTR_0006s15980 (11)	scaffold_6:13749069-13749271(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g29710.1	"beta-expansin precursor, putative, expressed"	Medtr3g136440.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13102.2.S1_at	A	A1MS	POPTR_0006s15980	POPTR_0006s15980 (10)	scaffold_6:13748703-13749473(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g29710.1	"beta-expansin precursor, putative, expressed"	Medtr3g136440.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131025.1.S1_s_at	A	A1TS	POPTR_0017s02040	POPTR_0017s02040 (11)	scaffold_17:1493041-1495719(-) (11)	NA	Q8L8W0	ALA-interacting subunit 5	AT1G79450.1	ALA-interacting subunit 5 	LOC_Os03g02830.1	"cell cycle control protein, putative, expressed"	Medtr7g102850.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.131029.1.S1_s_at	A	A1TS	POPTR_0008s12790	POPTR_0008s12790 (11)	scaffold_8:8277936-8279290(-) (11)	NA	P77938	Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]	AT2G01350.1	quinolinate phoshoribosyltransferase 	LOC_Os09g38060.2	"nicotinate-nucleotide pyrophosphorylase, putative, expressed"	NA	NA	GO:0009435|NAD biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004514|nicotinate-nucleotide diphosphorylase (carboxylating) activity	NA
PtpAffx.131043.1.S1_s_at	A	A1TS	POPTR_0019s11340	POPTR_0019s11340 (11)	scaffold_19:12670315-12671149(-) (11)	NA	Q4V893	Uncharacterized protein KIAA1704 homolog	AT1G65280.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g33800.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g104870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.131044.1.S1_s_at	A	A1TS	POPTR_0001s28320	POPTR_0001s28320 (11)	scaffold_1:27119017-27119502(-) (11)	NA	Q9LFC5	Pentatricopeptide repeat-containing protein At5g01110	AT5G01110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06910.1	PPR repeat containing protein	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131056.1.S1_s_at	A	A1TS	POPTR_0007s01460	POPTR_0007s01460 (11)	scaffold_7:819632-820536(-) (11)	NA	Q9NU19	TBC1 domain family member 22B	AT2G30710.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g34040.1	"TBC domain containing protein, expressed"	Medtr2g120560.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.131057.1.A1_s_at	A	A1TS	POPTR_0001s40140	POPTR_0001s40140 (11)	scaffold_1:39452870-39453005(-) (11)	NA	NA	NA	AT1G78815.1	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g092170.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131057.2.S1_s_at	A	A1TS	POPTR_0001s40140	POPTR_0001s40140 (11)	scaffold_1:39454734-39454895(-) (11)	NA	NA	NA	AT1G78815.1	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g092170.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131060.1.S1_at	A	A1TS	POPTR_0001s23990	POPTR_0001s23990 (9)	scaffold_1:23373392-23374597(+) (10)	NA	Q9XES1	"Calcium-transporting ATPase 4, endoplasmic reticulum-type"	AT1G07670.1	endomembrane-type CA-ATPase 4 	LOC_Os03g17310.1	"calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed"	Medtr7g120500.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.131073.1.S1_at	A	A1TS	POPTR_0006s29170	POPTR_0006s29170 (11)	scaffold_6:26624794-26627856(+) (11)	NA	NA	NA	AT4G31340.1	myosin heavy chain-related 	LOC_Os08g40790.2	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131074.1.S1_s_at	A	A1TS	POPTR_0015s13940	POPTR_0015s13940 (11)	scaffold_15:13690207-13692579(-) (11)	NA	NA	NA	AT5G51880.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g02730.1	expressed protein	Medtr1g129750.1	"ABR017Cp, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1311.1.A1_at	A	A1TS	POPTR_0013s01620	POPTR_0013s01620 (11)	scaffold_13:919235-919292(+) (11)	NA	Q9M9W3	Serine/threonine-protein phosphatase PP1 isozyme 9	AT3G05580.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g24750.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g138660.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.13110.1.S1_s_at	A	A1TS	POPTR_0003s03100	POPTR_0003s03100 (11)	scaffold_3:3452538-3453399(-) (11)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131102.1.S1_at	A	A1TS	POPTR_0007s06190	POPTR_0007s06190 (10)	scaffold_7:4357203-4358155(-) (10)	NA	Q940M2	"Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial"	AT4G39660.1	alanine:glyoxylate aminotransferase 2 	LOC_Os03g07570.4	"aminotransferase, putative, expressed"	Medtr4g140630.1	"Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.131105.1.S1_at	A	A1TS	POPTR_0016s06640	POPTR_0016s06640 (11)	scaffold_16:4447664-4447966(+) (11)	NA	Q5IH14	Sucrose-phosphatase 1	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os02g05030.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.131105.1.S1_s_at	A	A2TS	POPTR_0006s21420	POPTR_0016s06640 (11)//POPTR_0006s21420 (11)	scaffold_16:4447214-4448092(+) (11)//scaffold_6:20479321-20480155(+) (11)	NA	Q5IH14	Sucrose-phosphatase 1	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os01g27880.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.131114.3.S1_s_at	A	A1TS	POPTR_0007s10100	POPTR_0007s10100 (11)	scaffold_7:9825918-9827869(+) (11)	NA	Q08467	Casein kinase II subunit alpha-1	AT5G67380.1	casein kinase alpha 1 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr8g099310.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.131142.1.S1_a_at	A	A2TS	POPTR_0002s12420	POPTR_0014s02290 (11)//POPTR_0002s12420 (11)	scaffold_14:1940849-1941105(+) (11)//scaffold_2:9217974-9218230(+) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.131142.1.S1_at	A	A1TS	POPTR_0002s12420	POPTR_0002s12420 (11)	scaffold_2:9217836-9218829(+) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.131148.1.S1_a_at	A	A1TS	POPTR_0010s05740	POPTR_0010s05740 (9)	scaffold_10:7227668-7228054(+) (10)//scaffold_5:6547947-6548333(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131149.1.S1_at	A	A1TS	POPTR_0008s09950	POPTR_0008s09950 (10)	scaffold_8:6160806-6161813(-) (10)	NA	Q5RD67	Solute carrier family 25 member 44	AT5G15640.1	Mitochondrial substrate carrier family protein 	LOC_Os01g22600.1	"mitochondrial carrier protein, putative, expressed"	Medtr2g036920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13116.1.S1_at	A	A1TS	POPTR_0006s14630	POPTR_0006s14630 (11)	scaffold_6:11989548-11989599(-) (11)	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
PtpAffx.13117.1.A1_at	A	A1TS	POPTR_0002s01920	POPTR_0002s01920 (11)	scaffold_2:1030580-1031610(+) (11)	NA	NA	NA	AT1G76010.1	Alba DNA/RNA-binding protein 	LOC_Os09g37006.2	"protein of unknown function domain containing protein, expressed"	Medtr3g144390.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.131198.1.S1_at	A	A1TS	POPTR_0010s08200	POPTR_0010s08200 (11)	scaffold_10:9145232-9145776(+) (11)	NA	Q96524	Cryptochrome-2	AT1G04400.1	cryptochrome 2 	LOC_Os02g41550.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr1g042700.1	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.131222.1.S1_at	A	A1TS	POPTR_0007s13060	POPTR_0007s13060 (11)	scaffold_7:13241764-13242302(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G66530.2	Galactose mutarotase-like superfamily protein 	LOC_Os09g15820.1	"aldose 1-epimerase, putative, expressed"	Medtr5g020530.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.131222.1.S1_s_at	A	A1TS	POPTR_0007s13060	POPTR_0007s13060 (11)	scaffold_7:13242299-13242670(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G66530.2	Galactose mutarotase-like superfamily protein 	LOC_Os09g15820.1	"aldose 1-epimerase, putative, expressed"	Medtr5g020530.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.131228.1.S1_at	A	A1TS	POPTR_0009s01050	POPTR_0009s01050 (9)	scaffold_9:1175997-1178378(-) (9)	NA	O04997	"Superoxide dismutase [Cu-Zn], chloroplastic"	AT2G28190.1	copper/zinc superoxide dismutase 2 	LOC_Os08g44770.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr4g076170.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
PtpAffx.131235.1.S1_at	A	A1TS	POPTR_0006s25050	POPTR_0006s25050 (9)	scaffold_6:23496857-23498458(-) (9)	NA	Q8VY07	Clathrin interactor EPSIN 1	AT5G11710.1	ENTH/VHS family protein 	LOC_Os04g51120.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131235.1.S1_s_at	A	A1TS	POPTR_0006s25050	POPTR_0006s25050 (11)	scaffold_6:23496160-23498409(-) (11)	NA	Q8VY07	Clathrin interactor EPSIN 1	AT5G11710.1	ENTH/VHS family protein 	LOC_Os04g51120.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131255.1.S1_at	A	A1TS	POPTR_0010s25440	POPTR_0010s25440 (11)	scaffold_10:21123364-21124754(+) (11)	POPTR_0008s01130 (7)	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os01g59760.1	"bZIP transcription factor, putative, expressed"	Medtr8g047750.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.131267.1.S1_s_at	A	A1TS	POPTR_0011s05200	POPTR_0011s05200 (11)	scaffold_11:5086226-5086638(+) (11)	NA	P93011	Pentatricopeptide repeat-containing protein At2g33760	AT2G33760.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g08140.1	"pentatricopeptide, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131276.1.S1_at	A	A1TS	POPTR_0016s11670	POPTR_0016s11670 (10)	scaffold_16:10880470-10880679(+) (10)	NA	Q9SR77	"Heme-binding-like protein At3g10130, chloroplastic"	AT2G37970.1	SOUL heme-binding family protein 	LOC_Os01g63210.1	"SOUL heme-binding protein, putative, expressed"	Medtr4g016000.1	SOUL heme-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13128.1.S1_at	A	A1TS	POPTR_0010s21790	POPTR_0010s21790 (11)	scaffold_10:18927005-18927991(-) (11)	NA	Q54K56	Beta-hexosaminidase subunit B2	AT3G55260.1	beta-hexosaminidase 1 	LOC_Os05g02510.1	"beta-hexosaminidase precursor, putative, expressed"	Medtr2g080430.1	"Glycoside hydrolase, family 20; ; "	GO:0005975|carbohydrate metabolic process	GO:0004563|beta-N-acetylhexosaminidase activity	NA
PtpAffx.131287.1.S1_at	A	A1TS	POPTR_0001s42650	POPTR_0001s42650 (11)	scaffold_1:42680219-42684132(-) (11)	NA	Q567B1	Ubiquitin thioesterase OTU1	AT1G50670.1	OTU-like cysteine protease family protein 	LOC_Os02g06890.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr5g100030.1	"Ovarian tumour, otubain; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131317.1.S1_s_at	A	A2TS	POPTR_0012s07540	POPTR_0012s07540 (11)//POPTR_0015s07980 (11)	scaffold_12:8445237-8447567(+) (11)//scaffold_15:9262707-9265145(+) (11)	NA	Q6P2B1	Transportin-3	AT5G62600.1	ARM repeat superfamily protein 	LOC_Os10g33770.1	importin-beta N-terminal domain containing protein	AC233677_6.1	Exportin-1/Importin-beta-like AC233677.2 40883-35967 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.131319.1.A1_s_at	A	A1TS	POPTR_0001s26240	POPTR_0001s26240 (11)	scaffold_1:25295036-25295285(-) (11)	NA	Q94CJ8	Zinc finger CCCH domain-containing protein 55	AT3G21100.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g21140.1	"RNA-binding zinc finger protein, putative, expressed"	Medtr5g008940.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.131325.1.S1_s_at	A	A1TS	POPTR_0004s11800	POPTR_0004s11800 (11)	scaffold_4:10670177-10671403(+) (11)	NA	Q9LLC1	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic"	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	Medtr7g012310.1	Biotin-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131433.1.S1_at	A	A1TS	POPTR_0006s07730	POPTR_0006s07730 (11)	scaffold_6:5633984-5634778(+) (11)	NA	NA	NA	AT5G35330.3	methyl-CPG-binding domain protein 02 	LOC_Os09g32090.1	"methyl-binding domain protein MBD, putative, expressed"	Medtr1g111540.1	"Thymidine kinase; Methyl-CpG binding; Zinc finger, CW-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.131450.1.S1_at	A	A1TS	POPTR_0017s06050	POPTR_0017s06050 (11)	scaffold_17:4691219-4692454(-) (11)	POPTR_0007s02130 (6)	Q84RR0	Probable E3 ubiquitin-protein ligase ARI7	AT2G31510.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.131455.1.S1_s_at	A	A1TS	POPTR_0003s11510	POPTR_0003s11510 (11)	scaffold_3:12279242-12280073(+) (11)	POPTR_0001s07990 (6)	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.131467.1.S1_at	A	A1TS	POPTR_0007s06770	POPTR_0007s06770 (9)	scaffold_7:5137320-5137457(+) (9)	NA	Q9SJ12	"Probable ATP synthase 24 kDa subunit, mitochondrial"	AT2G21870.1	copper ion binding;cobalt ion binding;zinc ion binding 	LOC_Os02g03860.1	"mitochondrial ATP synthase precursor, putative, expressed"	Medtr4g141050.1	"Probable ATP synthase 24 kDa subunit, mitochondrial precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131474.1.S1_s_at	A	A1TS	POPTR_0003s16110	POPTR_0003s16110 (11)	scaffold_3:15724680-15725489(-) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr7g020760.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.131475.1.S1_at	A	A1TS	POPTR_0002s25080	POPTR_0002s25080 (9)	scaffold_2:22272497-22272987(+) (9)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT3G25290.2	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr7g046190.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1315.2.S1_a_at	A	A1TS	POPTR_0003s10690	POPTR_0003s10690 (11)	scaffold_3:11620417-11621648(+) (11)	NA	Q924W5	Structural maintenance of chromosomes protein 6	AT5G61460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g03370.1	"MIM, putative, expressed"	Medtr4g080220.1	"structural maintenance of chromosomes, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1315.4.S1_a_at	A	A1TS	POPTR_0003s10690	POPTR_0003s10690 (11)	scaffold_3:11621816-11622180(+) (11)	NA	Q924W5	Structural maintenance of chromosomes protein 6	AT5G61460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g03370.1	"MIM, putative, expressed"	Medtr4g080220.1	"structural maintenance of chromosomes, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131511.1.S1_s_at	A	A1TS	POPTR_0004s11510	POPTR_0004s11510 (11)	scaffold_4:10288602-10289096(+) (11)	NA	Q9S7W5	Transcription factor TCP13	AT3G02150.2	plastid transcription factor 1 	LOC_Os01g55750.3	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131512.1.S1_at	A	A1TS	POPTR_0010s25730	POPTR_0010s25730 (9)	scaffold_10:21256394-21256457(-) (9)	NA	Q9LU41	"Calcium-transporting ATPase 9, plasma membrane-type"	AT3G21180.1	autoinhibited Ca(2+)-ATPase 9 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.131586.1.S1_at	A	A1TS	POPTR_0003s19410	POPTR_0003s19410 (11)	scaffold_3:18140124-18142751(-) (11)	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr8g043600.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.131589.1.A1_at	A	A1TS	POPTR_0012s07890	POPTR_0012s07890 (11)	scaffold_12:8848384-8848951(-) (11)	NA	Q27GI3	Nucleobase-ascorbate transporter 6	AT5G62890.4	Xanthine/uracil permease family protein 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g125300.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.131598.1.S1_at	A	A1TS	POPTR_0001s21640	POPTR_0001s21640 (11)	scaffold_1:20167475-20171742(+) (11)	NA	NA	NA	AT1G11400.3	partner of Y14-MAGO 	LOC_Os03g15560.1	"wibg, putative, expressed"	Medtr2g007870.1	"Exon junction complex, Pym "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1316.2.S1_s_at	A	A1TS	POPTR_0001s14240	POPTR_0001s14240 (11)	scaffold_1:11177685-11177814(-) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13160.1.A1_at	A	A1TS	POPTR_0001s28860	POPTR_0001s28860 (11)	scaffold_1:27635771-27636049(+) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G30150.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131613.1.S1_s_at	A	A1TS	POPTR_0012s05840	POPTR_0012s05840 (11)	scaffold_12:5653441-5655299(+) (11)	NA	Q84M92	Actin-related protein 4	AT1G18450.1	actin-related protein 4 	LOC_Os08g04280.2	"actin, putative, expressed"	Medtr5g075350.3	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.131630.1.S1_at	A	A1TS	POPTR_0006s04370	POPTR_0006s04370 (11)	scaffold_6:2968149-2969815(+) (11)	NA	P74476	Peptide chain release factor 2	AT3G57190.1	"peptide chain release factor, putative "	LOC_Os05g31160.1	"peptide chain release factor 2, putative, expressed"	Medtr1g062640.1	Class I peptide chain release factor; PCRF 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
PtpAffx.13164.2.S1_at	A	A1TS	POPTR_0012s05720	POPTR_0012s05720 (11)	scaffold_12:5514723-5515189(+) (11)	NA	Q869R9	Myb-like protein J	AT1G49010.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr8g073480.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13164.3.S1_at	A	A1TS	POPTR_0001s32730	POPTR_0001s32730 (10)	scaffold_1:31009401-31009913(-) (11)	NA	Q9LIS3	UDP-glucuronate 4-epimerase 6	AT3G23820.1	UDP-D-glucuronate 4-epimerase 6 	LOC_Os08g41440.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr3g105090.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.131640.1.A1_at	A	A1TS	POPTR_0005s26980	POPTR_0005s26980 (10)	scaffold_5:24794407-24794909(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131654.1.S1_s_at	A	A1TS	POPTR_0013s06770	POPTR_0013s06770 (11)	scaffold_13:5481809-5483732(-) (11)	NA	P26683	RNA polymerase sigma factor rpoD	AT1G08540.1	RNApolymerase sigma subunit 2 	LOC_Os11g26160.1	"RNA polymerase sigma factor, putative, expressed"	Medtr3g163870.1	"Winged helix repressor DNA-binding; RNA polymerase sigma factor RpoS, proteobacteria; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.131693.1.S1_at	A	A2TS	POPTR_0009s03980	POPTR_0009s03980 (10)//POPTR_0001s25020 (9)	scaffold_1:24283863-24285026(+) (9)//scaffold_9:4554877-4555901(+) (10)	NA	Q9ZW06	Pumilio homolog 2	AT2G29190.2	pumilio 2 	LOC_Os01g62650.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr4g084270.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.1317.1.A1_at	A	A1TS	POPTR_0003s15800	POPTR_0003s15800 (11)	scaffold_3:15494915-15494981(-) (11)	NA	Q41542	Probable xyloglucan endotransglucosylase/hydrolase	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099560.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.1317.1.A1_x_at	A	A1TS	POPTR_0003s15800	POPTR_0003s15800 (11)	scaffold_3:15494883-15495108(-) (11)	NA	Q41542	Probable xyloglucan endotransglucosylase/hydrolase	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099560.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.131717.1.S1_at	A	A1TS	POPTR_0016s02100	POPTR_0016s02100 (10)	scaffold_16:1012770-1012858(+) (10)	NA	Q7ZUW2	Hypoxia up-regulated protein 1	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g48110.1	"DnaK family protein, putative, expressed"	Medtr3g068340.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131719.1.S1_at	A	A1TS	POPTR_0014s05780	POPTR_0014s05780 (11)	scaffold_14:4316010-4317486(-) (11)	NA	NA	NA	AT2G45060.1	Uncharacterised conserved protein UCP022280 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131727.1.S1_at	A	A1TS	POPTR_0007s10110	POPTR_0007s10110 (10)	scaffold_7:9835616-9836327(+) (10)	NA	NA	NA	AT2G23093.1	Major facilitator superfamily protein 	LOC_Os08g02190.1	expressed protein	Medtr5g016070.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131750.1.S1_at	A	A1TS	POPTR_0006s03550	POPTR_0006s03550 (10)	scaffold_6:2319598-2320070(+) (10)	NA	O80674	Transcription factor bHLH106	AT2G41130.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr7g106450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.131756.1.S1_at	A	A1TS	POPTR_0010s18680	POPTR_0010s18680 (10)	scaffold_10:16858510-16861701(-) (10)	NA	Q93WI9	Protein HEADING DATE 3A	AT1G65480.1	PEBP (phosphatidylethanolamine-binding protein) family protein 	LOC_Os06g06320.1	"osFTL2  FT-Like2 homologous to Flowering Locus T  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	Medtr7g099820.1	"Protein FLOWERING LOCUS T, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13176.1.A1_a_at	A	A1TS	POPTR_0019s10720	POPTR_0019s10720 (11)	scaffold_19:12218003-12218234(-) (11)	NA	Q9LJM4	Receptor-like protein kinase HAIKU2	AT1G72180.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os01g65650.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr4g041600.1	"Receptor-like protein kinase HAIKU2 precursor, related "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.131760.1.A1_at	A	A1TS	POPTR_0009s10430	POPTR_0009s10430 (10)	scaffold_9:8952854-8953353(+) (10)	NA	Q9LJK1	Glycoprotein 3-alpha-L-fucosyltransferase A	AT3G19280.1	fucosyltransferase 11 	LOC_Os08g36840.1	"glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed"	Medtr4g129820.1	"Glycosyl transferase, family 10 "	GO:0006486|protein amino acid glycosylation	GO:0008417|fucosyltransferase activity	GO:0016020|membrane
PtpAffx.131798.1.S1_at	A	A1TS	POPTR_0001s15990	POPTR_0001s15990 (11)	scaffold_1:12820938-12820973(-) (11)//scaffold_1:12824603-12824638(-) (11)//scaffold_1347:2245-2280(+) (11)	NA	O49432	Polygalacturonase QRT3	AT4G20050.2	Pectin lyase-like superfamily protein 	LOC_Os04g52320.1	"QRT3, putative, expressed"	Medtr4g089990.1	Parallel beta-helix repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131802.1.S1_at	A	A1TS	POPTR_0008s18400	POPTR_0008s18400 (10)	scaffold_8:12370597-12372440(-) (10)	NA	Q9SS90	E3 ubiquitin-protein ligase RGLG1	AT3G01650.1	RING domain ligase1 	LOC_Os01g68060.1	"copine, putative, expressed"	Medtr3g102530.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131809.1.S1_at	A	A1TS	POPTR_0016s02560	POPTR_0016s02560 (11)	scaffold_16:1264926-1265559(+) (11)	NA	Q9M1K3	Probable aquaporin SIP2-1	AT3G56950.2	small and basic intrinsic protein 2;1 	LOC_Os03g20410.1	"aquaporin SIP2-1, putative, expressed"	Medtr7g105100.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13181.1.S1_at	A	A1MS	POPTR_0011s13920	POPTR_0011s13920 (11)	scaffold_11:16541913-16542023(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.13181.1.S1_s_at	A	A1TS	POPTR_0011s13920	POPTR_0011s13920 (11)	scaffold_11:16541469-16541829(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.131810.1.S1_at	A	A1TS	POPTR_0015s10010	POPTR_0015s10010 (11)	scaffold_15:11065425-11066200(+) (11)	NA	Q9AWM9	Ribosome production factor 2 homolog	AT3G23620.1	Ribosomal RNA processing Brix domain protein 	LOC_Os01g33030.1	"Brix domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131812.1.S1_at	A	A1TS	POPTR_0006s15920	POPTR_0006s15920 (11)	scaffold_6:13599766-13600235(+) (11)	NA	NA	NA	AT3G25910.1	Protein of unknown function (DUF1644) 	LOC_Os01g42700.5	expressed protein	Medtr8g119520.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131813.1.S1_at	A	A1TS	POPTR_0001s28180	POPTR_0001s28180 (11)	scaffold_1:26950680-26952817(-) (11)	NA	Q1PFH7	Pentatricopeptide repeat-containing protein At1g62350	AT1G62350.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g18620.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g034630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131820.1.S1_at	A	A1TS	POPTR_0004s14310	POPTR_0004s14310 (11)	scaffold_4:14758282-14759761(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.131822.1.S1_s_at	A	A1TS	POPTR_0015s08960	POPTR_0015s08960 (11)	scaffold_15:10307452-10307663(+) (11)	NA	O00566	U3 small nucleolar ribonucleoprotein protein MPP10	AT5G66540.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os11g04200.1	"M phase phosphoprotein 10, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131828.1.S1_at	A	A1TS	POPTR_0006s19860	POPTR_0006s19860 (10)	scaffold_6:18876650-18877135(+) (10)	NA	Q9ZUH3	Probable purine permease 5	AT2G24220.2	purine permease 5 	LOC_Os09g38510.1	"purine permease, putative, expressed"	Medtr2g018910.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.131835.1.S1_at	A	A1TS	POPTR_0009s16140	POPTR_0009s16140 (11)	scaffold_9:12342504-12343015(+) (11)	NA	Q9SEA0	"Capsanthin/capsorubin synthase, chromoplast"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr2g107590.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.131847.1.S1_at	A	A1TS	POPTR_0013s07150	POPTR_0013s07150 (11)	scaffold_13:5876945-5877407(+) (11)	NA	P38935	DNA-binding protein SMUBP-2	AT5G35970.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g04440.1	"DNA-binding protein, putative, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131848.1.S1_at	A	A1TS	POPTR_0001s13420	POPTR_0001s13420 (11)	scaffold_1:10507486-10508560(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G13160.1	Protein kinase superfamily protein 	LOC_Os02g30900.1	"protein kinase domain containing protein, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.131853.1.S1_s_at	A	A1TS	POPTR_0003s13290	POPTR_0003s13290 (11)	scaffold_3:13673030-13673437(+) (11)	NA	NA	NA	AT1G64050.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os02g16600.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131881.1.S1_at	A	A1TS	POPTR_0002s08470	POPTR_0002s08470 (10)	scaffold_2:5905933-5911148(-) (10)	NA	Q5F3V3	Sister chromatid cohesion protein PDS5 homolog A	AT1G77600.2	ARM repeat superfamily protein 	LOC_Os01g64900.1	"HEAT, putative, expressed"	Medtr2g032740.1	"HEAT, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131887.1.A1_at	A	A1TS	POPTR_0018s04970	POPTR_0018s04970 (9)	scaffold_18:4414986-4415491(+) (9)	NA	Q92346	Uncharacterized protein C6G9.01c	AT5G11760.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1764, eukaryotic (InterPro:IPR013885); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os03g49485.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131888.1.S1_s_at	A	A1TS	POPTR_0008s09330	POPTR_0008s09330 (11)	scaffold_8:5772687-5773851(-) (11)	NA	Q9LMG8	Putative SNAP25 homologous protein SNAP30	AT1G13890.1	soluble N-ethylmaleimide-sensitive factor adaptor protein 30 	LOC_Os02g32740.1	"SNARE domain containing protein, putative, expressed"	Medtr5g046670.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131904.1.S1_s_at	A	A1TS	POPTR_0005s23250	POPTR_0005s23250 (11)	scaffold_5:22078149-22078631(-) (11)	NA	Q4P4G8	UPF0396 protein UM04995	AT4G02720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g28220.1	"NFKB, putative, expressed"	AC235567_24.1	Protein of unknown function DUF926 AC235567.1 81779-83332 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131927.1.S1_at	A	A1TS	POPTR_0001s35620	POPTR_0001s35620 (9)	scaffold_1:33957284-33957997(-) (9)	NA	Q9LY84	GDSL esterase/lipase At5g14450	AT5G14450.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.131941.1.S1_at	A	A1TS	POPTR_0013s13890	POPTR_0013s13890 (9)	scaffold_13:14218308-14218772(-) (9)	NA	Q0WUU6	Probable polyol transporter 4	AT2G20780.1	Major facilitator superfamily protein 	LOC_Os04g44750.1	"transporter family protein, putative, expressed"	Medtr6g104300.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.131946.1.S1_s_at	A	A2TS	POPTR_0004s15960	POPTR_0004s15960 (11)//POPTR_0004s15900 (9)	scaffold_4:16413117-16413554(+) (9)//scaffold_4:16446880-16447292(+) (11)	NA	Q8VZ80	Polyol transporter 5	AT3G18830.1	polyol/monosaccharide transporter 5 	LOC_Os07g39350.1	"transporter family protein, putative, expressed"	Medtr3g159730.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.131949.1.S1_at	A	A1TS	POPTR_0014s10680	POPTR_0014s10680 (9)	scaffold_14:7949616-7949848(-) (9)	NA	Q8LPH6	Transcription factor MYB86	AT1G09540.1	myb domain protein 61 	LOC_Os05g04820.1	"MYB family transcription factor, putative, expressed"	Medtr7g134240.1	"MYB2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131971.1.S1_at	A	A1MS	POPTR_0001s05150	POPTR_0001s05150 (10)	scaffold_1:3950515-3950956(-) (10)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.2	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131988.1.S1_at	A	A1TS	POPTR_0013s13440	POPTR_0013s13440 (11)	scaffold_13:13919539-13919583(+) (11)	NA	Q8GY87	Probable ubiquitin-conjugating enzyme E2 26	AT1G53025.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.131988.1.S1_s_at	A	A1TS	POPTR_0013s13440	POPTR_0013s13440 (11)	scaffold_13:13920934-13921297(+) (11)	NA	Q8GY87	Probable ubiquitin-conjugating enzyme E2 26	AT1G53025.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.131999.1.S1_at	A	A1TS	POPTR_0019s10430	POPTR_0019s10430 (10)	scaffold_19:12009466-12009753(+) (10)	NA	Q9LQ28	Ethylene-responsive transcription factor ERF022	AT1G33760.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g36640.1	"dehydration-responsive element-binding protein, putative"	Medtr5g008580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.13200.1.S1_at	A	A1MS	POPTR_0010s00430	POPTR_0010s00430 (10)	scaffold_10:205924-206210(+) (10)	NA	Q9LRP1	Novel plant SNARE 13	AT3G17440.1	novel plant snare 13 	LOC_Os03g25390.1	"novel plant SNARE 11, putative, expressed"	Medtr8g134080.1	Target SNARE coiled-coil region; Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13201.1.S1_at	A	A1TS	POPTR_0012s13160	POPTR_0012s13160 (11)	scaffold_12:13436810-13437208(+) (11)	NA	NA	NA	AT5G23760.1	Copper transport protein family 	LOC_Os10g36200.2	"heavy metal-associated domain containing protein, expressed"	AC235674_17.1	"heavy-metal-associated domain-containing protein, putative AC235674.1 87926-88304 E EGN_Mt090430 200"	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.132026.1.A1_at	A	A1TS	POPTR_0007s10880	POPTR_0007s10880 (11)	scaffold_7:11065589-11066062(-) (11)	NA	O48653	DNA polymerase alpha catalytic subunit	AT5G67100.1	DNA-directed DNA polymerases 	LOC_Os01g64820.1	"POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed"	Medtr5g017000.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0001882|nucleoside binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	GO:0005634|nucleus
PtpAffx.132026.1.A1_s_at	A	A1TS	POPTR_0007s10880	POPTR_0007s10880 (11)	scaffold_7:11065813-11066266(-) (11)	NA	O48653	DNA polymerase alpha catalytic subunit	AT5G67100.1	DNA-directed DNA polymerases 	LOC_Os01g64820.1	"POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed"	Medtr5g017000.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0001882|nucleoside binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	GO:0005634|nucleus
PtpAffx.132029.1.A1_at	A	A1MA	POPTR_0019s12860	POPTR_0019s12860 (10)	scaffold_104:9906-10171(+) (10)//scaffold_19:13867827-13868092(-) (10)//scaffold_2238:1454-1719(+) (10)	NA	Q9FZB8	Probable LRR receptor-like serine/threonine-protein kinase At1g51810	AT4G29990.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44930.1	"receptor-like protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.132056.1.A1_s_at	A	A1TS	POPTR_0001s35160	POPTR_0001s35160 (11)	scaffold_1:33415756-33416243(-) (11)	NA	Q9LXE5	DNA (cytosine-5)-methyltransferase DRM1	AT5G15380.1	domains rearranged methylase 1 	LOC_Os03g02010.2	"DNA methyltransferase protein, putative, expressed"	Medtr5g019320.1	C-5 cytosine-specific DNA methylase; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132059.1.A1_at	A	A1TS	POPTR_0002s03290	POPTR_0002s03290 (11)	scaffold_2:2019959-2020742(+) (11)	NA	NA	NA	AT1G19690.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g15660.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g028880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132065.1.A1_at	A	A1TS	POPTR_0006s23930	POPTR_0006s23930 (11)	scaffold_6:22643230-22643789(-) (11)	NA	NA	NA	AT3G13980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). 	LOC_Os03g07920.1	expressed protein	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132065.2.A1_a_at	A	A2TS	POPTR_0006s23930	POPTR_0006s23930 (11)//POPTR_0018s05500 (11)	scaffold_18:5107769-5108130(+) (11)//scaffold_6:22643511-22643866(-) (11)	NA	NA	NA	AT3G13980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). 	LOC_Os03g07920.1	expressed protein	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132065.2.A1_at	A	A1TS	POPTR_0018s05500	POPTR_0018s05500 (11)	scaffold_18:5107846-5108272(+) (11)	NA	NA	NA	AT1G54200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits to 581 proteins in 136 species: Archae - 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink). 	NA	NA	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132068.1.A1_at	A	A1MS	POPTR_0008s08980	POPTR_0008s08980 (11)	scaffold_8:5569703-5569809(+) (11)	NA	Q6R8G0	Phosphate transporter PHO1 homolog 10	AT1G69480.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.132068.1.A1_s_at	A	A1TS	POPTR_0008s08980	POPTR_0008s08980 (11)	scaffold_8:5569463-5569712(+) (11)	NA	Q6R8G0	Phosphate transporter PHO1 homolog 10	AT1G69480.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.132071.1.S1_at	A	A1TS	POPTR_0011s09560	POPTR_0011s09560 (11)	scaffold_11:11898247-11899182(-) (11)	NA	NA	NA	AT4G26630.2	DEK domain-containing chromatin associated protein 	LOC_Os03g40010.1	"DEK C terminal domain containing protein, expressed"	Medtr5g103320.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132085.1.A1_at	A	A1TS	POPTR_0005s20190	POPTR_0005s20190 (9)	scaffold_5:19237374-19237804(+) (11)	NA	Q6MEG4	Ribosomal RNA small subunit methyltransferase H	AT5G10910.1	mraW methylase family protein 	LOC_Os02g04500.2	"S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed"	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.132097.1.A1_at	A	A1TS	POPTR_0005s15220	POPTR_0005s15220 (11)	scaffold_5:11987647-11987995(+) (11)	NA	Q9ZDC7	Putative glutamine amidotransferase-like protein RP404	AT5G38200.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os01g04620.3	"transposon protein, putative, unclassified, expressed"	Medtr7g093720.1	Peptidase C26 	GO:0006541|glutamine metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.1321.1.S1_a_at	A	A2TS	POPTR_0007s02360	POPTR_0017s06380 (11)//POPTR_0007s02360 (11)	scaffold_17:4894090-4895696(+) (11)//scaffold_7:1390895-1391514(+) (11)	NA	Q9DCQ3	Vesicle transport protein GOT1A	AT5G01430.2	Got1/Sft2-like vescicle transport protein family 	LOC_Os03g11100.1	"vesicle transport protein GOT1B, putative, expressed"	Medtr5g096590.1	Got1-like protein 	GO:0016192|vesicle-mediated transport	NA	NA
PtpAffx.1321.2.S1_a_at	A	A1TS	POPTR_0007s02360	POPTR_0007s02360 (11)	scaffold_7:1390913-1391765(+) (11)	NA	Q9DCQ3	Vesicle transport protein GOT1A	AT5G01430.2	Got1/Sft2-like vescicle transport protein family 	LOC_Os03g11100.1	"vesicle transport protein GOT1B, putative, expressed"	Medtr5g096590.1	Got1-like protein 	GO:0016192|vesicle-mediated transport	NA	NA
PtpAffx.132115.1.A1_at	A	A1TS	POPTR_0016s14610	POPTR_0016s14610 (10)	scaffold_16:13780791-13781258(-) (10)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g60330.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g083650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.13213.1.A1_at	A	A1TS	POPTR_0009s11820	POPTR_0009s11820 (11)	scaffold_9:9733068-9734114(-) (11)	NA	P93398	Guanine nucleotide-binding protein subunit beta-2	AT4G34460.1	GTP binding protein beta 1 	LOC_Os03g46650.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g159480.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132141.1.S1_at	A	A1TS	POPTR_0010s17700	POPTR_0010s17700 (9)	scaffold_10:16185017-16185124(-) (9)	NA	NA	NA	AT4G33540.1	metallo-beta-lactamase family protein 	LOC_Os02g58270.1	"metallo-beta-lactamase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132154.1.A1_s_at	A	A1TS	POPTR_0015s07370	POPTR_0015s07370 (11)	scaffold_15:8536037-8536440(-) (11)	NA	Q9D853	Methyltransferase-like protein 10	AT1G66680.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g03090.1	"methyltransferase, putative, expressed"	Medtr7g094110.1	Methyltransferase type 12 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.132157.1.A1_at	A	A1TS	POPTR_0004s20700	POPTR_0004s20700 (9)	scaffold_4:20136509-20136995(-) (9)	NA	Q8K9U9	Bifunctional aspartokinase/homoserine dehydrogenase	AT5G21060.1	Glyceraldehyde-3-phosphate dehydrogenase-like family protein 	LOC_Os11g03470.3	"bifunctional aspartokinase/homoserine dehydrogenase, putative, expressed"	Medtr3g111270.1	Homoserine dehydrogenase 	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.132201.1.A1_at	A	A1TS	POPTR_0001s30210	POPTR_0001s30210 (10)	scaffold_1:28741595-28743090(+) (10)	NA	A9A3L9	Ribosomal RNA large subunit methyltransferase N	AT3G19630.1	Radical SAM superfamily protein 	LOC_Os03g10520.1	"radical SAM enzyme, putative, expressed"	Medtr5g005360.1	Conserved hypothetical protein 48; Radical SAM 	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.132210.1.A1_at	A	A1TS	POPTR_0017s02840	POPTR_0017s02840 (11)	scaffold_17:2040654-2040859(+) (11)	NA	NA	NA	AT5G16610.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g12120.1	"no apical meristem protein, putative, expressed"	Medtr5g085900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132216.1.A1_at	A	A1TS	POPTR_0002s12650	POPTR_0002s12650 (11)	scaffold_2:9440472-9440990(+) (11)	NA	NA	NA	AT3G49180.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g22534.4	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g039650.1	"WD repeat-containing protein 18, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132216.2.A1_at	A	A1TS	POPTR_0014s02710	POPTR_0014s02710 (9)	scaffold_14:2252502-2253146(+) (9)	NA	Q3SZD4	WD repeat-containing protein 18	AT3G49180.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g22534.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g015120.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132231.1.A1_at	A	A1TS	POPTR_0003s13480	POPTR_0003s13480 (10)	scaffold_3:13861595-13863331(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT5G41620.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g15980.1	expressed protein	Medtr5g009870.1	"Uncharacterized protein At5g41620, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132235.1.A1_at	A	A1TS	POPTR_0002s00660	POPTR_0002s00660 (10)	scaffold_2:293094-293357(-) (10)	NA	Q4R7R1	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0006694|steroid biosynthetic process||GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity	NA
PtpAffx.132254.1.S1_at	A	A1TS	POPTR_0008s14600	POPTR_0008s14600 (9)	scaffold_8:9687539-9688238(-) (11)	NA	P42751	Cyclin-D1-1	AT1G70210.1	CYCLIN D1;1 	LOC_Os08g32540.1	"cyclin, putative, expressed"	Medtr5g036580.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.13229.2.S1_at	A	A1TS	POPTR_0018s08300	POPTR_0018s08300 (11)	scaffold_18:9201231-9201925(+) (11)	NA	Q9C5K8	Protein TIFY 3B	AT5G20900.1	jasmonate-zim-domain protein 12 	LOC_Os04g55920.2	"zinc-finger protein, putative, expressed"	Medtr2g052350.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13229.3.A1_at	A	A1TS	POPTR_0006s23390	POPTR_0006s23390 (10)	scaffold_6:22129442-22129692(+) (10)	NA	Q9C5K8	Protein TIFY 3B	AT5G20900.1	jasmonate-zim-domain protein 12 	LOC_Os04g55920.2	"zinc-finger protein, putative, expressed"	Medtr2g052350.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132297.1.A1_at	A	A1TS	POPTR_0002s17000	POPTR_0002s17000 (9)	scaffold_2:12764056-12764191(+) (9)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132322.1.A1_a_at	A	A2TS	POPTR_0001s41040	POPTR_0001s41040 (11)//POPTR_0011s12010 (11)	scaffold_1:40684088-40684691(-) (11)//scaffold_11:14796365-14796930(+) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132322.1.A1_at	A	A1TS	POPTR_0001s41040	POPTR_0001s41040 (11)	scaffold_1:40684032-40684782(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132322.2.A1_at	A	A1TS	POPTR_0011s12010	POPTR_0011s12010 (11)	scaffold_11:14796613-14797033(+) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.2	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132329.2.A1_a_at	A	A1TS	POPTR_0006s03890	POPTR_0006s03890 (11)	scaffold_6:2604663-2604935(-) (11)	NA	Q10KY3	Calcium/calmodulin-dependent serine/threonine-protein kinase 1	AT2G41140.1	CDPK-related kinase 1 	LOC_Os07g44710.1	"CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr7g106490.1	Protein kinase; EF-Hand type 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132333.1.A1_at	A	A1TS	POPTR_0010s04470	POPTR_0010s04470 (9)	scaffold_10:5561790-5562093(+) (9)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G69910.1	Protein kinase superfamily protein 	LOC_Os03g58750.1	"protein kinase domain containing protein, expressed"	Medtr5g038490.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132345.1.A1_s_at	A	A1TS	POPTR_0004s14080	POPTR_0004s14080 (11)	scaffold_4:14566435-14568299(-) (11)	NA	Q38772	Cell division control protein 2 homolog A	AT3G48750.1	cell division control 2 	LOC_Os03g02680.2	"cyclin-dependent kinase A-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132367.1.A1_at	A	A1TS	POPTR_0014s08800	POPTR_0014s08800 (11)	scaffold_14:6515018-6515153(+) (11)	NA	Q8S8M5	Protein ABIL1	AT2G46225.1	ABI-1-like 1 	LOC_Os01g43420.1	expressed protein	Medtr7g143400.1	"Protein ABIL2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132381.1.A1_at	A	A1TS	POPTR_0008s03660	POPTR_0008s03660 (11)	scaffold_8:1988869-1989340(-) (11)	NA	Q9LTC0	Probable receptor-like protein kinase At5g47070	AT3G09830.2	Protein kinase superfamily protein 	LOC_Os02g57420.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr1g076510.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132383.1.A1_s_at	A	A1TS	POPTR_0006s13670	POPTR_0006s13670 (11)	scaffold_6:10898989-10899366(+) (11)	NA	Q43062	Pectinesterase/pectinesterase inhibitor PPE8B	AT4G33220.1	pectin methylesterase 44 	LOC_Os08g34900.1	"pectinesterase, putative, expressed"	Medtr2g052320.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.132389.1.A1_s_at	A	A1TS	POPTR_0001s30900	POPTR_0001s30900 (11)	scaffold_1:29317812-29318256(+) (11)	NA	Q2N5X0	Kynurenine formamidase	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132389.2.S1_s_at	A	A1TS	POPTR_0001s30900	POPTR_0001s30900 (11)	scaffold_1:29315471-29316604(+) (11)	NA	Q2N5X0	Kynurenine formamidase	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132398.1.A1_at	A	A1TS	POPTR_0005s17760	POPTR_0005s17760 (10)	scaffold_5:15490856-15491058(-) (10)	NA	NA	NA	AT5G49710.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g54080.2	expressed protein	Medtr5g074990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132407.2.A1_a_at	A	A1TS	POPTR_0016s00320	POPTR_0016s00320 (11)	scaffold_16:51755-51910(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT3G24120.1	Homeodomain-like superfamily protein 	LOC_Os08g25799.1	"Myb transcription factor, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132417.1.A1_at	A	A1TS	POPTR_0012s10930	POPTR_0012s10930 (11)	scaffold_12:11589905-11591016(-) (11)	NA	Q6TNS2	p21-activated protein kinase-interacting protein 1-like	AT1G65030.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g42150.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g056250.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132467.1.S1_s_at	A	A2TS	POPTR_0005s05450	POPTR_0005s05450 (11)//POPTR_0013s03790 (11)	scaffold_13:2448023-2448362(-) (11)//scaffold_5:3608357-3608696(-) (11)	NA	A2Z7B3	"GDP-mannose 3,5-epimerase 1"	AT5G28840.2	"GDP-D-mannose 3',5'-epimerase "	LOC_Os10g28200.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr7g140940.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.132468.1.S1_s_at	A	A2TS	POPTR_0006s20580	POPTR_0016s04800 (11)//POPTR_0006s20580 (11)	scaffold_16:2878733-2879054(-) (11)//scaffold_6:19603247-19603573(+) (11)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os09g10710.2	"R-interacting factor 1, putative, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132468.2.S1_at	A	A1TS	POPTR_0006s20580	POPTR_0006s20580 (10)	scaffold_6:19602403-19603721(+) (10)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os09g10710.2	"R-interacting factor 1, putative, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132472.1.S1_at	A	A1TS	POPTR_0001s34640	POPTR_0001s34640 (10)	scaffold_1:32877936-32879098(-) (10)	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.132474.1.S1_at	A	A1TS	POPTR_0001s07900	POPTR_0001s07900 (11)	scaffold_1:5986619-5990906(-) (11)	NA	Q8MJJ1	Maspardin	AT4G12230.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g08840.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g106940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132481.1.S1_at	A	A1MS	POPTR_0013s13900	POPTR_0013s13900 (11)	scaffold_13:14225855-14226375(+) (11)	NA	Q91YR7	Pre-mRNA-processing factor 6	AT4G03430.1	pre-mRNA splicing factor-related 	LOC_Os10g35550.1	"pre-mRNA-processing factor 6, putative, expressed"	Medtr1g013230.1	"PRP1 splicing factor, N-terminal "	"GO:0044260|cellular macromolecule metabolic process||GO:0000398|""nuclear mRNA splicing, via spliceosome"""	NA	GO:0005634|nucleus
PtpAffx.1325.1.S1_at	A	A1TS	POPTR_0021s00790	POPTR_0021s00790 (9)	scaffold_21:460561-461586(+) (9)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT1G61900.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1). 	LOC_Os07g01240.1	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13251.1.S1_at	A	A1TS	POPTR_0012s10330	POPTR_0012s10330 (11)	scaffold_12:11143200-11143834(-) (11)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os11g43820.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr3g150820.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132513.1.S1_at	A	A1MS	POPTR_0006s20720	POPTR_0006s20720 (11)	scaffold_6:19706721-19707847(+) (11)	NA	P93740	"Nudix hydrolase 23, chloroplastic"	AT2G42070.1	nudix hydrolase homolog 23 	LOC_Os09g38040.1	"hydrolase, NUDIX family protein, expressed"	Medtr7g111980.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.132556.1.S1_at	A	A1TS	POPTR_0009s16660	POPTR_0009s16660 (11)	scaffold_9:12608958-12609791(+) (11)	NA	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.1	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.132590.1.S1_at	A	A1TS	POPTR_0003s15390	POPTR_0003s15390 (11)	scaffold_3:15177776-15181072(-) (11)	NA	Q9XI84	"Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT4G20130.1	plastid transcriptionally active 14 	LOC_Os05g50980.1	"SET domain containing protein, expressed"	Medtr4g089950.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132592.1.S1_at	A	A1TS	POPTR_0009s14350	POPTR_0009s14350 (9)	scaffold_9:11250098-11250726(+) (9)	NA	Q9SVE5	Expansin-like A2	AT4G38400.1	expansin-like A2 	LOC_Os03g04020.1	"expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132598.1.S1_s_at	A	A1TS	POPTR_0002s11270	POPTR_0002s11270 (11)	scaffold_2:8337395-8338014(+) (11)	NA	P92934	Amino acid permease 6	AT5G49630.1	amino acid permease 6 	LOC_Os07g04180.1	"amino acid transporter, putative, expressed"	Medtr3g127950.1	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132606.1.S1_at	A	A1TS	POPTR_0001s28510	POPTR_0001s28510 (11)	scaffold_1:27277159-27277563(+) (11)	NA	O80871	Probable protein phosphatase 2C 25	AT2G30020.1	Protein phosphatase 2C family protein 	LOC_Os03g18150.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132626.1.S1_s_at	A	A1TS	POPTR_0013s12230	POPTR_0013s12230 (11)	scaffold_13:12855268-12856180(+) (11)	NA	NA	NA	AT2G31130.1	unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). 	NA	NA	Medtr4g109560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132628.1.S1_s_at	A	A1TS	POPTR_0002s17010	POPTR_0002s17010 (11)	scaffold_2:12774990-12776245(-) (11)	NA	Q9SKD9	Probable WRKY transcription factor 46	AT2G46400.1	WRKY DNA-binding protein 46 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.132656.1.A1_at	A	A1TS	POPTR_0011s14170	POPTR_0011s14170 (11)	scaffold_11:16682145-16682675(-) (11)	NA	Q67YE6	Zinc finger AN1 domain-containing stress-associated protein 12	AT3G28210.1	zinc finger (AN1-like) family protein 	LOC_Os09g21710.1	"AN1-like zinc finger domain containing protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.132676.1.S1_at	A	A1TS	POPTR_0014s08420	POPTR_0014s08420 (11)	scaffold_14:6260587-6261208(+) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT4G00290.1	Mechanosensitive ion channel protein 	LOC_Os04g48940.2	"uncharacterized mscS family protein, putative, expressed"	AC235567_81.1	MscS Mechanosensitive ion channel AC235567.1 293100-287373 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.132676.1.S1_s_at	A	A2TS	POPTR_0002s16360	POPTR_0014s08420 (11)//POPTR_0002s16360 (11)	scaffold_14:6260664-6262378(+) (11)//scaffold_2:12244154-12245302(+) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT4G00290.1	Mechanosensitive ion channel protein 	LOC_Os04g48940.2	"uncharacterized mscS family protein, putative, expressed"	AC235567_81.1	MscS Mechanosensitive ion channel AC235567.1 293100-287373 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.132684.1.A1_at	A	A1TS	POPTR_0004s22560	POPTR_0004s22560 (11)	scaffold_4:21424363-21425356(+) (11)	NA	Q4QSC8	Shugoshin-1	AT3G44960.1	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g31930.1	"shugoshin-1, putative, expressed"	Medtr4g076490.1	hypothetical protein 	GO:0045132|meiotic chromosome segregation	NA	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.132694.1.S1_at	A	A1TS	POPTR_0003s15900	POPTR_0003s15900 (11)	scaffold_3:15571628-15571885(+) (11)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os08g42620.2	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr1g124850.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.132698.2.S1_at	A	A1TS	POPTR_0001s05720	POPTR_0001s05720 (9)	scaffold_1:4397272-4397440(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.132702.1.A1_at	A	A1TS	POPTR_0015s11530	POPTR_0015s11530 (11)	scaffold_15:12097103-12097278(-) (11)	NA	Q11204	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2"	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.132702.1.A1_s_at	A	A1TS	POPTR_0015s11530	POPTR_0015s11530 (11)	scaffold_15:12097299-12098125(-) (11)	NA	Q11204	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2"	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.132718.1.S1_s_at	A	A1TS	POPTR_0012s03340	POPTR_0012s03340 (11)	scaffold_12:2649964-2650530(+) (11)	NA	Q14684	Ribosomal RNA processing protein 1 homolog B	AT5G20600.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). "	LOC_Os04g56350.1	"nucleolar protein,Nop52 containing protein, expressed"	Medtr8g147770.1	"Nucleolar, Nop52 "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	"GO:0030688|""preribosome, small subunit precursor"""
PtpAffx.13272.2.S1_a_at	A	A1TS	POPTR_0013s15250	POPTR_0013s15250 (11)	scaffold_13:15279488-15279873(-) (11)	NA	A7NY33	Peroxidase 4	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os11g02130.1	"peroxidase precursor, putative, expressed"	Medtr3g145050.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.13274.1.A1_a_at	A	A2TS	POPTR_0012s10040	POPTR_0015s10930 (11)//POPTR_0012s10040 (11)	scaffold_12:10908387-10908466(-) (11)//scaffold_15:11677769-11677848(-) (11)	NA	Q9SW34	Protein transport protein Sec61 subunit gamma-1	AT5G50460.1	secE/sec61-gamma protein transport protein 	LOC_Os02g08180.1	"protein transport protein SEC61 subunit gamma, putative, expressed"	Medtr5g091490.1	Protein secE/sec61-gamma protein 	GO:0006605|protein targeting	NA	GO:0016020|membrane
PtpAffx.13274.1.A1_s_at	A	A1TS	POPTR_0012s10040	POPTR_0012s10040 (11)	scaffold_12:10907296-10908386(-) (11)	NA	Q9SW34	Protein transport protein Sec61 subunit gamma-1	AT5G50460.1	secE/sec61-gamma protein transport protein 	LOC_Os02g08180.1	"protein transport protein SEC61 subunit gamma, putative, expressed"	Medtr5g091490.1	Protein secE/sec61-gamma protein 	GO:0006605|protein targeting	NA	GO:0016020|membrane
PtpAffx.132767.1.S1_at	A	A1TS	POPTR_0009s12690	POPTR_0009s12690 (9)	scaffold_9:10313483-10314032(+) (9)	NA	Q93YQ7	Endoglucanase 24	AT4G39010.1	glycosyl hydrolase 9B18 	LOC_Os09g36060.1	"endoglucanase, putative, expressed"	Medtr3g163060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.132816.1.S1_at	A	A1TS	POPTR_0014s16520	POPTR_0014s16520 (11)	scaffold_14:12586947-12587517(-) (11)	NA	O19071	"Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase"	AT2G05320.1	"beta-1,2-N-acetylglucosaminyltransferase II "	LOC_Os02g55470.1	"alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, putative"	NA	NA	GO:0009312|oligosaccharide biosynthetic process	"GO:0008455|""alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity"""	GO:0016021|integral to membrane||GO:0005795|Golgi stack
PtpAffx.132819.1.S1_s_at	A	A1TS	POPTR_0005s17850	POPTR_0005s17850 (11)	scaffold_5:15606550-15607029(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT5G49700.1	Predicted AT-hook DNA-binding family protein 	LOC_Os04g50030.1	"DNA binding protein, putative, expressed"	Medtr3g149230.1	Predicted AT-hook DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132845.1.S1_at	A	A2TS	POPTR_0013s09940	POPTR_0013s09940 (11)//POPTR_0013s10990 (11)	scaffold_13:9918139-9919113(+) (11)//scaffold_13:11670388-11671343(-) (11)	NA	Q94K73	"Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial"	AT3G58140.1	phenylalanyl-tRNA synthetase class IIc family protein 	LOC_Os12g34860.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr7g094230.1	"Phenylalanyl-tRNA synthetase, mitochondrial; Ribosomal protein L20; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0008033|tRNA processing||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.132851.1.S1_at	A	A1TS	POPTR_0014s16700	POPTR_0014s16700 (11)	scaffold_14:12781680-12782726(-) (11)	NA	P49572	"Indole-3-glycerol phosphate synthase, chloroplastic"	AT5G48220.1	Aldolase-type TIM barrel family protein 	LOC_Os04g39270.1	"indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed"	Medtr5g091460.1	"Indole-3-glycerol phosphate synthase; TonB box, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132883.1.S1_at	A	A1TS	POPTR_0012s04140	POPTR_0012s04140 (11)	scaffold_12:3352287-3352337(+) (11)	NA	Q9LE73	Nudix hydrolase 4	AT1G18300.1	nudix hydrolase homolog 4 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr6g080940.2	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.132894.1.S1_a_at	A	A2TS	POPTR_0002s16960	POPTR_0002s16960 (11)//POPTR_0014s09120 (11)	scaffold_14:6754867-6755016(+) (11)//scaffold_2:12726398-12726547(+) (11)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132894.2.S1_s_at	A	A1TS	POPTR_0014s09120	POPTR_0014s09120 (11)	scaffold_14:6755591-6755897(+) (11)	POPTR_0002s16960 (6)	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132904.1.S1_at	A	A1TS	POPTR_0017s14230	POPTR_0017s14230 (11)	scaffold_17:14368599-14369648(-) (11)	POPTR_0004s10580 (7)	P58813	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase"	AT3G30841.1	Cofactor-independent phosphoglycerate mutase 	LOC_Os12g35040.1	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0046872|metal ion binding	NA
PtpAffx.132910.1.S1_s_at	A	A2TS	POPTR_0001s33180	POPTR_0001s33180 (11)//POPTR_0016s00420 (10)	scaffold_1:31374534-31375625(-) (11)//scaffold_16:112260-113358(+) (10)	NA	A7IPQ1	50S ribosomal protein L15	AT5G64670.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os08g21840.1	"50S ribosomal protein L15, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.132923.1.S1_at	A	A1TS	POPTR_0005s07640	POPTR_0005s07640 (10)	scaffold_5:5228377-5230590(+) (10)	NA	O24454	Ubiquitin carboxyl-terminal hydrolase 3	AT4G39910.1	ubiquitin-specific protease 3 	LOC_Os04g37950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr3g101810.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.132923.1.S1_s_at	A	A2TS	POPTR_0005s07640	POPTR_0005s07640 (11)//POPTR_0007s05400 (11)	scaffold_5:5228341-5230848(+) (11)//scaffold_7:3487461-3489654(+) (11)	NA	O24454	Ubiquitin carboxyl-terminal hydrolase 3	AT4G39910.1	ubiquitin-specific protease 3 	LOC_Os04g37950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr3g101810.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.132950.1.S1_s_at	A	A1TS	POPTR_0009s04790	POPTR_0009s04790 (11)	scaffold_9:5056184-5056699(+) (11)	NA	NA	NA	AT1G07310.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132968.1.S1_s_at	A	A1TS	POPTR_0002s03180	POPTR_0002s03180 (11)	scaffold_2:1959054-1959695(+) (11)	NA	P82859	Agglutinin	AT1G19715.3	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.3	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132974.1.S1_s_at	A	A1TS	POPTR_0019s04960	POPTR_0019s04960 (11)	scaffold_19:5161969-5162847(-) (11)	NA	NA	NA	AT1G55370.2	NDH-dependent cyclic electron flow 5 	LOC_Os03g53710.1	"aldose 1-epimerase, putative, expressed"	Medtr6g030670.1	Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132992.1.A1_at	A	A1TS	POPTR_0008s03280	POPTR_0008s03280 (11)	scaffold_8:1742686-1743054(-) (11)	NA	NA	NA	AT2G39210.1	Major facilitator superfamily protein 	LOC_Os03g58580.1	"nodulin, putative, expressed"	AC233660_5.1	Nodulin-like; Major facilitator superfamily MFS_1 AC233660.2 23536-25326 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132995.1.S1_at	A	A1TS	POPTR_0002s05830	POPTR_0002s05830 (11)	scaffold_2:3831182-3831648(-) (11)	NA	NA	NA	AT2G30880.1	Pleckstrin homology (PH) domain-containing protein 	LOC_Os03g46340.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g098210.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1330.1.S1_at	A	A1TS	POPTR_0005s02620	POPTR_0005s02620 (9)	scaffold_5:1668117-1668752(-) (9)	NA	NA	NA	AT1G56210.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os05g05820.1	"pro-resilin precursor, putative, expressed"	Medtr8g138820.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.133005.1.S1_at	A	A1MS	POPTR_0018s12340	POPTR_0018s12340 (10)	scaffold_18:12830649-12831368(-) (10)	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G25270.1	Ubiquitin-like superfamily protein 	LOC_Os08g19830.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133007.1.S1_at	A	A1TS	POPTR_0013s07620	POPTR_0013s07620 (11)	scaffold_13:6453928-6455064(-) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT4G27600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os10g42240.1	"kinase, pfkB family, putative, expressed"	Medtr4g107860.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133012.1.S1_at	A	A1TS	POPTR_0010s08090	POPTR_0010s08090 (9)	scaffold_10:9027005-9028823(-) (9)	NA	NA	NA	AT5G43310.2	COP1-interacting protein-related 	LOC_Os03g64320.1	expressed protein	Medtr1g090340.1	"COP1-interacting protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133018.1.S1_s_at	A	A1TS	POPTR_0015s11290	POPTR_0015s11290 (11)	scaffold_15:11888119-11888742(+) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G41040.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr3g150860.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.133056.1.S1_at	A	A1TA	POPTR_0007s03550	POPTR_0007s03550 (10)	scaffold_7:2043077-2043665(+) (10)	NA	Q9FMF5	Root phototropism protein 3	AT5G64330.1	Phototropic-responsive NPH3 family protein 	LOC_Os02g35970.1	"BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr4g120980.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.133062.1.S1_at	A	A1TS	POPTR_0003s07930	POPTR_0003s07930 (11)	scaffold_3:9426229-9430465(-) (11)	NA	Q8W5B1	Polycomb group protein VERNALIZATION 2	AT4G16845.1	VEFS-Box of polycomb protein 	LOC_Os09g13630.1	"ZOS9-03 - C2H2 zinc finger protein, expressed"	Medtr5g013280.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133063.1.S1_at	A	A1MS	POPTR_0014s17910	POPTR_0014s17910 (10)	scaffold_14:14453059-14453746(-) (11)	NA	NA	NA	AT1G45150.1	unknown protein; Has 219 Blast hits to 202 proteins in 78 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). 	LOC_Os07g39300.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133067.1.S1_s_at	A	A1TS	POPTR_0019s07200	POPTR_0019s07200 (11)	scaffold_19:8052639-8052912(-) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT5G16730.1	Plant protein of unknown function (DUF827) 	LOC_Os05g02820.1	"protein transport protein-related, putative, expressed"	Medtr4g107430.1	"protein transport protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133091.1.S1_s_at	A	A1TS	POPTR_0012s10660	POPTR_0012s10660 (11)	scaffold_12:11365935-11366100(-) (11)	NA	NA	NA	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.1331.1.S1_at	A	A1TS	POPTR_0010s21070	POPTR_0010s21070 (11)	scaffold_10:18489443-18490288(-) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT3G55460.1	SC35-like splicing factor 30 	LOC_Os02g15310.1	"RNA recognition motif containing protein, expressed"	Medtr5g087290.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.133107.1.S1_at	A	A1TS	POPTR_0016s14750	POPTR_0016s14750 (10)	scaffold_16:13902153-13902743(-) (10)	NA	NA	NA	AT3G08640.1	Protein of unknown function (DUF3411) 	LOC_Os01g59740.1	expressed protein	Medtr7g080630.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133124.1.S1_at	A	A1TS	POPTR_0001s06930	POPTR_0001s06930 (9)	scaffold_1:5291023-5292189(+) (9)	NA	A7MCT6	Ethanolamine kinase 2	AT1G74320.1	Protein kinase superfamily protein 	LOC_Os01g51920.1	"phosphotransferase, putative, expressed"	Medtr3g005000.1	"Choline kinase, N-terminal; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133149.1.S1_at	A	A1TS	POPTR_0009s04180	POPTR_0009s04180 (10)	scaffold_9:4675977-4677084(+) (10)	POPTR_0001s25160 (6)	NA	NA	AT3G46780.1	plastid transcriptionally active 16 	LOC_Os05g22614.1	"PTAC16, putative, expressed"	Medtr4g084290.1	"PTAC16 ; binding {Arab, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13315.1.S1_at	A	A1TS	POPTR_0015s05800	POPTR_0015s05800 (10)	scaffold_15:6148974-6150376(+) (10)	NA	Q6TEN6	WD repeat-containing protein 91	AT3G49660.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g23430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g125820.1	"WD repeat-containing protein 91, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133175.1.S1_at	A	A1TS	POPTR_0002s03840	POPTR_0002s03840 (11)	scaffold_2:2399015-2399739(+) (11)	NA	Q80Y84	Lysine-specific demethylase 5B	AT1G08620.2	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os05g10770.1	"transcription factor jumonji, putative, expressed"	Medtr4g137840.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; Zinc finger, C5HC2-type "	NA	NA	GO:0005634|nucleus
PtpAffx.133177.1.S1_at	A	A1TS	POPTR_0010s02190	POPTR_0010s02190 (11)	scaffold_10:2506957-2507451(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133192.1.S1_at	A	A1TS	POPTR_0001s34380	POPTR_0001s34380 (9)	scaffold_1:32532958-32533128(-) (9)	NA	A5GI62	Ribosome maturation factor rimM	AT5G46420.1	16S rRNA processing protein RimM family 	LOC_Os05g49130.2	"16S rRNA processing protein RimM containing protein, expressed"	Medtr4g136560.1	UTP--glucose-1-phosphate uridylyltransferase; 16S rRNA processing protein RimM 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	NA
PtpAffx.133192.1.S1_s_at	A	A1TS	POPTR_0001s34380	POPTR_0001s34380 (11)	scaffold_1:32531609-32532891(-) (11)	NA	A5GI62	Ribosome maturation factor rimM	AT5G46420.1	16S rRNA processing protein RimM family 	LOC_Os05g49130.2	"16S rRNA processing protein RimM containing protein, expressed"	Medtr4g136560.1	UTP--glucose-1-phosphate uridylyltransferase; 16S rRNA processing protein RimM 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	NA
PtpAffx.1332.1.S1_at	A	A1TS	POPTR_0003s04980	POPTR_0003s04980 (11)	scaffold_3:6080987-6081925(-) (11)	NA	Q9ZSY8	Auxin-responsive protein IAA27	AT4G29080.1	phytochrome-associated protein 2 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122570.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.1332.2.A1_at	A	A1TS	POPTR_0001s18680	POPTR_0001s18680 (11)	scaffold_1:15819457-15820212(+) (11)	NA	Q9ZSY8	Auxin-responsive protein IAA27	AT4G29080.1	phytochrome-associated protein 2 	LOC_Os01g13030.2	"OsIAA3 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122570.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.133200.1.S1_at	A	A1TS	POPTR_0013s14020	POPTR_0013s14020 (11)	scaffold_13:14335980-14336879(-) (11)	NA	NA	NA	AT4G03420.1	Protein of unknown function (DUF789) 	LOC_Os10g35150.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133206.1.S1_at	A	A1TS	POPTR_0010s12520	POPTR_0010s12520 (11)	scaffold_10:12536681-12536739(-) (11)	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.2	expressed protein	Medtr4g156620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133206.1.S1_s_at	A	A1TS	POPTR_0010s12520	POPTR_0010s12520 (11)	scaffold_10:12535944-12536633(-) (11)	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.2	expressed protein	Medtr4g156620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133217.1.S1_s_at	A	A1TS	POPTR_0005s03890	POPTR_0005s03890 (11)	scaffold_5:2579982-2581473(-) (11)	NA	Q9MA98	DNA excision repair protein ERCC-1	AT3G05210.1	"nucleotide repair protein, putative "	LOC_Os10g37490.1	"DNA excision repair protein ERCC-1, putative, expressed"	Medtr1g099210.1	DNA repair protein rad10; RuvA domain 2-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004519|endonuclease activity||GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.133231.1.S1_at	A	A1TS	POPTR_0011s16040	POPTR_0011s16040 (11)	scaffold_11:18009126-18010837(+) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G14350.2	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.133233.1.S1_at	A	A1TS	POPTR_0001s47730	POPTR_0001s47730 (10)	scaffold_1:47891434-47894079(-) (11)	POPTR_0004s06480 (6)	Q8RXZ4	Probable protein phosphatase 2C 18	AT1G79630.1	Protein phosphatase 2C family protein 	LOC_Os08g39100.1	"protein phosphatase 2C, putative, expressed"	Medtr7g089830.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133244.1.S1_at	A	A2TS	POPTR_0017s12950	POPTR_0017s12950 (11)//POPTR_0005s13350 (9)	scaffold_17:13114129-13114698(-) (11)//scaffold_5:10509804-10510371(+) (11)	NA	O35250	Exocyst complex component 7	AT3G29400.1	exocyst subunit exo70 family protein E1 	LOC_Os01g55799.3	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr3g036640.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.133247.1.S1_at	A	A1TS	POPTR_0005s02670	POPTR_0005s02670 (11)	scaffold_5:1708454-1708923(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.3	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133254.1.A1_at	A	A1TS	POPTR_0002s07560	POPTR_0002s07560 (11)	scaffold_2:5169615-5170395(-) (11)	NA	Q54M22	"2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial"	AT1G21400.1	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein 	LOC_Os12g08260.2	"dehydrogenase E1 component domain containing protein, expressed"	Medtr3g143240.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.133277.1.S1_at	A	A1TS	POPTR_0001s44480	POPTR_0001s44480 (11)	scaffold_1:44883877-44885161(+) (11)	NA	Q94C53	DDRGK domain-containing protein 1	AT4G27120.2	CONTAINS InterPro DOMAIN/s: DDRGK domain (InterPro:IPR019153); Has 14775 Blast hits to 8764 proteins in 778 species: Archae - 29; Bacteria - 1878; Metazoa - 5164; Fungi - 1447; Plants - 582; Viruses - 164; Other Eukaryotes - 5511 (source: NCBI BLink). 	LOC_Os07g01320.1	expressed protein	Medtr2g097160.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133289.1.S1_at	A	A3TS	POPTR_0015s00220	POPTR_0015s00220 (11)//POPTR_0015s02010 (11)//POPTR_0015s02000 (10)	scaffold_15:53037-53380(+) (11)//scaffold_15:1383648-1392861(-) (11)//scaffold_15:1388321-1393180(-) (10)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.1	Protein kinase superfamily protein 	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr1g034440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.133294.1.A1_at	A	A1MS	POPTR_0007s05310	POPTR_0007s05310 (11)	scaffold_7:3417137-3417299(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133302.1.S1_at	A	A1TS	POPTR_0006s15440	POPTR_0006s15440 (11)	scaffold_6:12826569-12827506(-) (11)	NA	NA	NA	AT2G26695.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os06g04920.1	"zinc finger family protein, putative, expressed"	Medtr8g119620.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.133334.1.A1_at	A	A1TS	POPTR_0008s06930	POPTR_0008s06930 (10)	scaffold_8:4176585-4176914(-) (10)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g094020.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.133344.1.A1_at	A	A1TS	POPTR_0002s15810	POPTR_0002s15810 (9)	scaffold_2:11780757-11781085(+) (9)	NA	Q9ZUH5	Short-chain dehydrogenase/reductase 2	AT1G01800.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44980.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133356.1.A1_at	A	A1TS	POPTR_0018s11470	POPTR_0018s11470 (9)	scaffold_18:12193365-12195258(-) (11)	NA	Q9M099	Serine carboxypeptidase 24	AT4G30610.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g55130.2	"OsSCP10 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.133377.1.A1_at	A	A3TS	POPTR_0005s09090	POPTR_0005s09090 (10)//POPTR_0007s07280 (10)//POPTR_0007s07220 (10)	scaffold_5:6374338-6374835(+) (10)//scaffold_7:5549921-5550404(+) (10)//scaffold_7:5584077-5584560(-) (10)	NA	Q9FTA0	GEM-like protein 4	AT5G08350.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os10g34730.1	"GEM, putative, expressed"	Medtr1g143990.1	Isopenicillin N synthetase; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133379.1.A1_at	A	A1TS	POPTR_0002s07330	POPTR_0002s07330 (11)	scaffold_2:5004202-5004956(+) (11)	NA	O49292	"PsbP domain-containing protein 4, chloroplastic"	AT1G77090.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os12g08830.1	"thylakoid lumenal 29.8 kDa protein, putative, expressed"	Medtr3g125340.1	"thylakoid lumenal 29.8 kDa protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133383.1.A1_at	A	A1TS	POPTR_0008s00290	POPTR_0008s00290 (11)	scaffold_8:82880-83187(-) (11)	NA	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog 1	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58130.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1334.1.S1_a_at	A	A2TS	POPTR_0006s27490	POPTR_0018s02150 (11)//POPTR_0006s27490 (11)	scaffold_18:1913514-1913618(-) (11)//scaffold_6:25377117-25377221(-) (11)	NA	NA	NA	AT2G25270.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1334.1.S1_at	A	A1TS	POPTR_0006s27490	POPTR_0006s27490 (11)	scaffold_6:25376780-25377337(-) (11)	NA	NA	NA	AT2G25270.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1334.2.A1_a_at	A	A1TS	POPTR_0018s02150	POPTR_0018s02150 (11)	scaffold_18:1913215-1913359(-) (11)	NA	NA	NA	AT2G25270.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1334.3.A1_at	A	A1TS	POPTR_0018s02150	POPTR_0018s02150 (9)	scaffold_18:1913239-1917226(-) (10)	NA	NA	NA	AT2G25270.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133404.1.A1_a_at	A	A1MS	POPTR_0004s19050	POPTR_0004s19050 (11)	scaffold_19:2347552-2347660(-) (11)//scaffold_217:35088-35196(+) (11)//scaffold_4:9478915-9479023(+) (11)//scaffold_4:18852393-18852501(+) (11)//scaffold_4:18951347-18951455(+) (11)	POPTR_0019s02590 (8)	Q9FH03	Beta-glucosidase 12	AT5G42260.1	beta glucosidase 12 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr4g024200.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.13344.2.S1_a_at	A	A1TS	POPTR_0002s08150	POPTR_0002s08150 (11)	scaffold_2:5646268-5646726(+) (11)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g66120.1	"No apical meristem protein, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.133453.1.A1_at	A	A1TS	POPTR_0016s00270	POPTR_0016s00270 (11)	scaffold_16:33236-33591(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g38960.1	expressed protein	Medtr2g033700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133458.1.A1_at	A	A1TS	POPTR_0001s32030	POPTR_0001s32030 (11)	scaffold_1:30457793-30458080(-) (11)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.133468.1.A1_at	A	A1TS	POPTR_0005s01330	POPTR_0005s01330 (9)	scaffold_5:439521-439608(-) (11)//scaffold_5:555212-555299(-) (11)//scaffold_5:566975-567062(-) (11)//scaffold_5:796867-796954(-) (11)//scaffold_5:880839-880925(-) (9)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133471.1.A1_at	A	A1TS	POPTR_0005s23360	POPTR_0005s23360 (11)	scaffold_5:22165205-22166081(+) (11)	NA	NA	NA	AT2G48140.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g57980.1	"LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr1g084060.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133481.1.A1_at	A	A1TS	POPTR_0002s09230	POPTR_0002s09230 (11)	scaffold_2:6550316-6550666(+) (11)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os10g21940.1	expressed protein	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133484.1.A1_at	A	A1TS	POPTR_0012s03540	POPTR_0012s03540 (11)	scaffold_12:2779819-2780003(-) (11)	NA	NA	NA	AT2G27660.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g41930.1	"DC1 domain-containing protein, putative"	Medtr7g112030.1	C1-like 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.133485.1.A1_at	A	A1TS	POPTR_0005s05090	POPTR_0005s05090 (11)	scaffold_5:3394226-3394525(+) (11)	NA	Q9M081	Protein transport protein Sec24-like At4g32640	AT4G32640.2	Sec23/Sec24 protein transport family protein 	LOC_Os11g29200.1	"protein transport protein, putative, expressed"	AC235094_11.1	Sec23/Sec24 trunk region; Sec23/Sec24 beta-sandwich AC235094.1 54936-56264 E EGN_Mt090430 200	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.133493.1.A1_at	A	A1TA	POPTR_0018s11080	POPTR_0018s11080 (10)	scaffold_18:11875884-11876256(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133495.1.S1_at	A	A1TS	POPTR_0007s03690	POPTR_0007s03690 (9)	scaffold_280:20285-21549(-) (9)//scaffold_7:2111995-2113185(-) (9)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT4G05430.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os01g53750.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g137950.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133511.1.S1_at	A	A1TS	POPTR_0010s07120	POPTR_0010s07120 (11)	scaffold_10:8319692-8320541(+) (11)//scaffold_10:8333484-8334388(+) (9)	NA	Q03662	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os05g34150.1	"glutathione S-transferase, putative, expressed"	Medtr1g111730.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133519.1.A1_at	A	A1TS	POPTR_0009s01160	POPTR_0009s01160 (11)	scaffold_9:1290627-1290666(-) (11)	NA	NA	NA	AT5G22930.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.2	expressed protein	Medtr4g076380.1	Protein of unknown function DUF1635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133534.1.A1_at	A	A1TS	POPTR_0012s00570	POPTR_0012s00570 (11)	scaffold_12:281487-282237(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G71400.1	receptor like protein 12 	LOC_Os12g11860.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.133554.1.A1_s_at	A	A1TS	POPTR_0005s16540	POPTR_0005s16540 (11)	scaffold_5:13402490-13402952(-) (11)	NA	Q13085	Acetyl-CoA carboxylase 1	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
PtpAffx.133563.1.A1_at	A	A1MS	POPTR_0014s15990	POPTR_0014s15990 (10)	scaffold_14:12070291-12071446(+) (10)	NA	A7SLC8	N-acetyltransferase 9-like protein	AT2G04845.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g09860.2	"acetyltransferase, GNAT family, putative, expressed"	Medtr3g106050.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.133567.1.A1_at	A	A1TS	POPTR_0014s07600	POPTR_0014s07600 (11)	scaffold_14:5710107-5710584(+) (11)	NA	Q9ZUT0	ABC transporter G family member 2	AT2G37360.1	ABC-2 type transporter family protein 	LOC_Os03g17350.1	"white-brown complex homolog protein, putative, expressed"	AC235022_3.1	ABC transporter related AC235022.1 10753-13248 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.133584.1.A1_at	A	A1TS	POPTR_0001s35280	POPTR_0001s35280 (10)	scaffold_1:33584735-33585267(-) (10)	NA	Q8L8Q3	LOB domain-containing protein 25	AT3G27650.1	LOB domain-containing protein 25 	LOC_Os01g07480.2	"DUF260 domain containing protein, putative, expressed"	Medtr3g114570.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133609.1.A1_at	A	A1TS	POPTR_0014s02660	POPTR_0014s02660 (11)	scaffold_14:2216188-2216663(+) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os04g59330.1	expressed protein	Medtr4g155720.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.133610.1.A1_at	A	A1MS	POPTR_0012s03530	POPTR_0012s03530 (9)	scaffold_12:2770762-2771252(-) (9)	NA	Q6R0H1	Protein LHY	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133616.1.A1_at	A	A1TS	POPTR_0017s04640	POPTR_0017s04640 (11)	scaffold_17:3545799-3547601(+) (11)	NA	Q9XFD1	Nuclear cap-binding protein subunit 2	AT5G44200.2	CAP-binding protein 20 	LOC_Os02g39890.1	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.133629.1.A1_s_at	A	A1TS	POPTR_0001s09040	POPTR_0001s09040 (11)	scaffold_1:6922184-6922293(+) (11)	NA	Q54KJ8	General transcription factor IIE subunit 2	AT4G20330.1	"Transcription initiation factor TFIIE, beta subunit "	LOC_Os10g25770.2	"transcription initiation factor IIE subunit beta, putative, expressed"	Medtr5g010780.2	"transcription initiation factor-related, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005673|transcription factor TFIIE complex
PtpAffx.133632.2.A1_s_at	A	A5TS	POPTR_0002s15110	POPTR_0002s15110 (11)//POPTR_0201s00200 (11)//POPTR_0002s15150 (11)//POPTR_0002s15170 (9)//POPTR_0002s15140 (9)	scaffold_2:11241209-11241504(+) (11)//scaffold_2:11290911-11291206(+) (11)//scaffold_2:11320855-11321150(+) (11)//scaffold_2:11337936-11338231(+) (9)//scaffold_201:4855-5150(-) (11)	NA	O64638	Cytochrome P450 76C3	AT2G45580.1	"cytochrome P450, family 76, subfamily C, polypeptide 3 "	LOC_Os10g08540.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.133641.1.A1_at	A	A1MS	POPTR_0008s20240	POPTR_0008s20240 (11)	scaffold_8:14014060-14014299(-) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G18910.1	Protein kinase superfamily protein 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr1g098870.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133650.1.A1_at	A	A1TS	POPTR_0013s01940	POPTR_0013s01940 (11)	scaffold_13:1115525-1115869(-) (11)	NA	NA	NA	AT5G27650.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g05660.1	"PWWP domain containing protein, expressed"	Medtr7g138980.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133656.1.A1_a_at	A	A2TS	POPTR_0002s03860	POPTR_0002s03860 (11)//POPTR_0005s24730 (11)	scaffold_2:2417418-2417455(-) (11)//scaffold_5:23170606-23170643(+) (11)	NA	NA	NA	AT2G31160.1	Protein of unknown function (DUF640) 	LOC_Os02g07030.3	"DUF640 domain containing protein, putative, expressed"	Medtr1g043150.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133656.2.S1_at	A	A1TS	POPTR_0002s03860	POPTR_0002s03860 (11)	scaffold_2:2416811-2417156(-) (11)	NA	NA	NA	AT2G31160.1	Protein of unknown function (DUF640) 	LOC_Os02g07030.3	"DUF640 domain containing protein, putative, expressed"	Medtr1g043150.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133656.3.A1_at	A	A1TS	POPTR_0005s24730	POPTR_0005s24730 (11)	scaffold_5:23170759-23171120(+) (11)	NA	NA	NA	AT2G31160.1	Protein of unknown function (DUF640) 	LOC_Os02g41460.1	"DUF640 domain containing protein, putative, expressed"	Medtr1g043150.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133657.1.A1_a_at	A	A1TS	POPTR_0002s09730	POPTR_0002s09730 (11)	scaffold_2:6976886-6977092(+) (11)	NA	Q43125	Cryptochrome-1	AT4G08920.1	cryptochrome 1 	LOC_Os04g37920.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g072760.2	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.133657.1.A1_at	A	A1TS	POPTR_0002s09730	POPTR_0002s09730 (9)	scaffold_2:6976455-6977258(+) (9)	NA	Q43125	Cryptochrome-1	AT4G08920.1	cryptochrome 1 	LOC_Os04g37920.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g072760.2	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.133657.2.A1_a_at	A	A1TA	POPTR_0002s09740	POPTR_0002s09740 (9)	scaffold_2:6977890-6978195(+) (11)	NA	P08995	Nodulin-26	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr5g072770.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.13366.1.S1_at	A	A2TS	POPTR_0001s04800	POPTR_0003s21590 (11)//POPTR_0001s04800 (11)	scaffold_1:3686657-3688364(+) (11)//scaffold_3:19688900-19690804(+) (11)	NA	Q9SPK5	Formate--tetrahydrofolate ligase	AT1G50480.1	10-formyltetrahydrofolate synthetase 	LOC_Os09g27420.1	"formate--tetrahydrofolate ligase, putative, expressed"	Medtr1g146470.1	"Formate-tetrahydrofolate ligase, FTHFS "	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004329|formate-tetrahydrofolate ligase activity||GO:0005524|ATP binding	NA
PtpAffx.133686.1.A1_at	A	A1TS	POPTR_0006s08310	POPTR_0006s08310 (11)	scaffold_6:6048138-6049089(+) (11)	NA	P45482	Cell division protein ftsZ	AT3G52750.1	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.133702.1.A1_at	A	A1TS	POPTR_0017s12910	POPTR_0017s12910 (9)	scaffold_17:13098801-13099273(+) (9)	NA	Q9LIA4	Protein RIK	AT3G29390.1	RS2-interacting KH protein 	LOC_Os03g11520.2	expressed protein	NA	NA	NA	GO:0003723|RNA binding	NA
PtpAffx.133712.1.A1_at	A	A1TS	POPTR_0018s12670	POPTR_0018s12670 (9)	scaffold_18:13192863-13193323(+) (11)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133714.1.A1_at	A	A1MS	POPTR_0008s21150	POPTR_0008s21150 (11)	scaffold_8:15312526-15312826(-) (11)	NA	NA	NA	AT1G09520.1	"LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr8g133790.1	"Zinc finger, PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133715.1.A1_at	A	A1TS	POPTR_0016s15060	POPTR_0016s15060 (9)	scaffold_16:14102972-14103291(+) (9)	NA	Q9AVK4	Protein SCARECROW	AT3G54220.1	GRAS family transcription factor 	LOC_Os11g03110.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g081070.1	Flagellar basal body rod protein; GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133720.1.A1_at	A	A1TS	POPTR_0015s06120	POPTR_0015s06120 (11)	scaffold_15:6407224-6407815(+) (11)	NA	Q7SXW0	Solute carrier family 25 member 39	AT4G27940.1	manganese tracking factor for mitochondrial SOD2 	LOC_Os08g29720.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g124670.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133722.1.A1_at	A	A1TS	POPTR_0013s05200	POPTR_0013s05200 (10)	scaffold_13:3690313-3691130(+) (10)	NA	Q9P2D0	Inhibitor of Bruton tyrosine kinase	AT3G03790.2	ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein 	LOC_Os07g07080.1	"regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed"	Medtr7g102770.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133729.1.A1_at	A	A1TS	POPTR_0010s25750	POPTR_0010s25750 (11)	scaffold_10:21282087-21282321(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133729.1.A1_s_at	A	A1TS	POPTR_0010s25750	POPTR_0010s25750 (11)	scaffold_10:21282126-21282381(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133752.1.A1_at	A	A1TS	POPTR_0004s19720	POPTR_0004s19720 (11)	scaffold_4:19485415-19485810(-) (11)	NA	A2YBX5	Protein kinase G11A	AT3G44610.1	Protein kinase superfamily protein 	LOC_Os11g05320.1	"AGC_PVPK_like_kin82y.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.133756.1.A1_at	A	A1MS	POPTR_0006s20820	POPTR_0006s20820 (11)	scaffold_6:19851790-19852068(+) (11)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr7g112150.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.133756.2.A1_a_at	A	A2TS	POPTR_0016s05890	POPTR_0149s00220 (11)//POPTR_0016s05890 (11)	scaffold_149:54551-54643(+) (11)//scaffold_16:3844072-3844165(+) (11)//scaffold_16:3844173-3844266(+) (11)//scaffold_16:3854355-3854451(+) (9)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr7g112150.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.133756.2.A1_at	A	A2TS	POPTR_0016s05890	POPTR_0016s05890 (11)//POPTR_0149s00220 (9)	scaffold_149:54385-54660(+) (9)//scaffold_16:3843909-3844283(+) (11)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr7g112150.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.133758.1.A1_at	A	A1TS	POPTR_0003s01370	POPTR_0003s01370 (10)	scaffold_3:1206198-1206761(-) (10)	NA	Q9SAC4	F-box protein At1g10780	AT1G10780.1	F-box/RNI-like superfamily protein 	LOC_Os09g28120.1	"OsFBX330 - F-box domain containing protein, expressed"	Medtr2g007270.1	"F-box protein At1g10780, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133782.1.A1_s_at	A	A1TS	POPTR_0006s02970	POPTR_0006s02970 (11)	scaffold_6:1881547-1881712(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity	NA
PtpAffx.133784.1.A1_at	A	A1TS	POPTR_0002s00440	POPTR_0002s00440 (11)	scaffold_2:156720-157085(-) (11)	NA	Q8RY95	Squamosa promoter-binding-like protein 14	AT1G20980.1	squamosa promoter binding protein-like 14 	LOC_Os08g40260.1	"OsSPL15 - SBP-box gene family member, expressed"	Medtr1g039740.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.133790.1.A1_at	A	A1TS	POPTR_0015s11170	POPTR_0015s11170 (11)	scaffold_15:11822968-11823305(-) (11)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os11g43820.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr3g150820.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133825.1.A1_at	A	A1TS	POPTR_0002s15660	POPTR_0002s15660 (11)	scaffold_2:11695746-11696217(+) (11)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT3G61180.1	RING/U-box superfamily protein 	LOC_Os02g45240.1	"zinc finger family protein, putative, expressed"	Medtr5g010900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133834.2.S1_s_at	A	A1TS	POPTR_0007s10380	POPTR_0007s10380 (11)	scaffold_7:10307070-10307800(-) (11)	NA	Q8BHJ5	F-box-like/WD repeat-containing protein TBL1XR1	AT5G67320.1	WD-40 repeat family protein 	LOC_Os07g22220.1	"F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133839.1.A1_at	A	A1TS	POPTR_0006s00350	POPTR_0006s00350 (11)	scaffold_6:134283-134827(-) (11)	NA	Q1LUT1	Enhancer of mRNA-decapping protein 4	AT3G13300.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g033290.1	"Peptidase S26A, signal peptidase I; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133840.1.A1_at	A	A1TS	POPTR_0014s13550	POPTR_0014s13550 (9)	scaffold_14:9964093-9964491(-) (9)	NA	Q95K04	E3 ubiquitin-protein ligase RNF133	AT3G58720.2	RING/U-box superfamily protein 	LOC_Os09g17610.1	"RING finger protein, putative, expressed"	Medtr4g110540.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133843.1.A1_a_at	A	A1TS	POPTR_0003s21350	POPTR_0003s21350 (11)	scaffold_3:19553869-19554217(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13385.1.S1_at	A	A1TS	POPTR_0004s24200	POPTR_0004s24200 (11)	scaffold_4:22910763-22911217(+) (11)	NA	P43903	Quinone oxidoreductase	AT5G61510.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os03g01190.1	"dehydrogenase, putative, expressed"	Medtr2g014130.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.13385.2.S1_at	A	A1TS	POPTR_0001s02300	POPTR_0001s02300 (11)	scaffold_1:1739463-1739831(-) (11)	NA	P43903	Quinone oxidoreductase	AT5G61510.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os03g01190.1	"dehydrogenase, putative, expressed"	Medtr2g014130.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.133870.1.A1_at	A	A1TS	POPTR_0018s07540	POPTR_0018s07540 (11)	scaffold_18:7888910-7889149(+) (11)	NA	P47787	Thromboxane-A synthase	AT2G26170.2	"cytochrome P450, family 711, subfamily A, polypeptide 1 "	LOC_Os01g50590.1	"cytochrome P450, putative"	Medtr3g139760.1	"E-class P450, group I "	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.133875.1.A1_at	A	A1MS	POPTR_0004s06530	POPTR_0004s06530 (11)	scaffold_4:5266506-5267896(-) (11)	NA	NA	NA	AT1G73350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 46 Blast hits to 46 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 3; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os02g42540.1	expressed protein	Medtr6g083900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133880.1.A1_at	A	A1MS	POPTR_0018s00600	POPTR_0018s00600 (11)	scaffold_18:531466-531737(+) (11)	NA	Q571G4	Protein lin-54 homolog	AT4G29000.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os01g55580.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	AC225507_24.1	"Tesmin/TSO1-like, CXC AC225507.11 107125-103243 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133884.1.A1_at	A	A1TS	POPTR_0011s07490	POPTR_0011s07490 (11)	scaffold_11:8337200-8338327(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133890.1.A1_at	A	A1TS	POPTR_0010s23760	POPTR_0010s23760 (11)	scaffold_10:20246345-20246887(+) (11)	NA	P29503	Protein neuralized	AT5G04460.3	RING/U-box superfamily protein 	LOC_Os02g57750.1	"protein binding protein, putative, expressed"	AC235664_19.1	"Haem peroxidase, plant/fungal/bacterial AC235664.1 73370-70390 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133891.1.A1_at	A	A1TS	POPTR_0018s02240	POPTR_0018s02240 (11)	scaffold_18:2005745-2006735(+) (11)	NA	Q0V7T5	Probable receptor-like protein kinase At1g80640	AT4G32000.2	Protein kinase superfamily protein 	LOC_Os05g25540.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g012230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.133899.1.A1_at	A	A1MS	POPTR_0010s09670	POPTR_0010s09670 (11)	scaffold_10:10387829-10388160(-) (11)	NA	NA	NA	AT3G22520.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 717 Blast hits to 703 proteins in 179 species: Archae - 14; Bacteria - 134; Metazoa - 141; Fungi - 74; Plants - 209; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). "	LOC_Os03g53590.2	expressed protein	Medtr5g006500.1	"CDPK adapter protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133900.1.A1_a_at	A	A1TS	POPTR_0014s10650	POPTR_0014s10650 (11)	scaffold_14:7928252-7928551(+) (11)	NA	Q8R116	Protein notum homolog	AT3G62060.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134290.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133900.1.A1_at	A	A1TS	POPTR_0014s10650	POPTR_0014s10650 (11)	scaffold_14:7929291-7929556(+) (11)	NA	Q8R116	Protein notum homolog	AT3G62060.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134290.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133900.2.A1_a_at	A	A1MS	POPTR_0014s10650	POPTR_0014s10650 (11)	scaffold_14:7928557-7928819(+) (11)	NA	Q8R116	Protein notum homolog	AT3G62060.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134290.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133902.1.A1_at	A	A1TS	POPTR_0001s35910	POPTR_0001s35910 (11)	scaffold_1:34371272-34371627(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133918.1.A1_at	A	A1TS	POPTR_0015s01160	POPTR_0015s01160 (11)	scaffold_15:717369-717869(-) (11)	NA	Q8LAP8	Dof zinc finger protein DOF4.6	AT4G24060.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os04g47990.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.133920.1.A1_at	A	A1MS	POPTR_0010s13620	POPTR_0010s13620 (11)	scaffold_10:13438095-13438322(+) (11)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	LOC_Os06g15370.1	"peptide transporter PTR2, putative, expressed"	Medtr5g068370.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.133937.2.A1_a_at	A	A1TS	POPTR_0001s07200	POPTR_0001s07200 (11)	scaffold_1:5447975-5448188(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133937.3.A1_a_at	A	A1TS	POPTR_0001s07200	POPTR_0001s07200 (11)	scaffold_1:5449767-5450152(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133939.1.A1_at	A	A1MS	POPTR_0012s04250	POPTR_0012s04250 (11)	scaffold_12:3482364-3482756(+) (11)	NA	Q15526	Surfeit locus protein 1	AT3G17910.1	Surfeit locus 1 cytochrome c oxidase biogenesis protein 	LOC_Os03g10360.1	"SURF1, putative, expressed"	Medtr6g083260.1	Surfeit locus 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133950.1.A1_at	A	A1MS	POPTR_0013s15390	POPTR_0013s15390 (11)	scaffold_13:15394788-15395039(+) (11)	NA	Q6BY27	ATP-dependent RNA helicase DBP2	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os01g10050.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.133965.1.A1_at	A	A1TS	POPTR_0019s13630	POPTR_0019s13630 (11)	scaffold_19:14493767-14494303(-) (11)	NA	NA	NA	AT4G03320.1	translocon at the inner envelope membrane of chloroplasts 20-IV 	LOC_Os07g38110.2	"tic20, putative, expressed"	Medtr5g024740.1	"Tic20-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133967.1.A1_at	A	A1TA	POPTR_0009s16220	POPTR_0009s16220 (11)	scaffold_9:12389908-12390144(-) (11)	NA	P60123	RuvB-like 1	AT5G22330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g08170.1	"ruvB-like, putative, expressed"	Medtr3g140320.1	"AAA ATPase; TIP49, C-terminal "	NA	GO:0003678|DNA helicase activity||GO:0005524|ATP binding	NA
PtpAffx.13397.1.S1_at	A	A1TS	POPTR_0014s07410	POPTR_0014s07410 (11)	scaffold_14:5587502-5588033(+) (11)	NA	Q16MG9	ATPase ASNA1 homolog	AT1G01910.4	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g34970.1	"arsenical pump-driving ATPase, putative, expressed"	Medtr1g120500.1	Anion-transporting ATPase 	GO:0006875|cellular metal ion homeostasis	GO:0005524|ATP binding	NA
PtpAffx.133970.1.A1_s_at	A	A1TS	POPTR_0013s14900	POPTR_0013s14900 (11)	scaffold_13:14977482-14978645(-) (11)	NA	Q9VDQ7	Phagocyte signaling-impaired protein	AT5G58450.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g27870.1	expressed protein	Medtr3g033590.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133976.1.A1_at	A	A1TS	POPTR_0007s00330	POPTR_0007s00330 (11)	scaffold_7:96076-96347(-) (11)	NA	O80575	"6,7-dimethyl-8-ribityllumazine synthase, chloroplastic"	AT2G44050.1	"6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase "	LOC_Os04g42000.1	"6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	NA	GO:0009349|riboflavin synthase complex
PtpAffx.133977.1.A1_at	A	A1TS	POPTR_0015s12290	POPTR_0015s12290 (11)	scaffold_15:12609144-12609597(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133979.1.A1_at	A	A1TS	POPTR_0003s19440	POPTR_0003s19440 (11)	scaffold_3:18168811-18169314(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13399.1.A1_at	A	A1TS	POPTR_0014s12790	POPTR_0014s12790 (11)	scaffold_14:9418865-9420423(-) (11)	NA	Q110D7	Peptide chain release factor 1	AT3G62910.1	Peptide chain release factor 1 	LOC_Os11g43600.1	"peptide chain release factor protein, putative, expressed"	Medtr7g130010.1	Peptide chain release factor 1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
PtpAffx.133994.1.A1_at	A	A1TS	POPTR_0005s16100	POPTR_0005s16100 (11)	scaffold_5:12747226-12748341(-) (11)	NA	Q7XJS0	Histone-lysine N-methyltransferase ASHR1	AT2G17900.1	SET domain group 37 	LOC_Os03g49730.2	"zinc finger protein, putative, expressed"	Medtr3g098090.1	"Histone-lysine N-methyltransferase ASHR1, putative "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.134011.1.A1_at	A	A1TS	POPTR_0005s25530	POPTR_0005s25530 (11)	scaffold_5:23766747-23766849(-) (11)	NA	P68428	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.134027.1.A1_at	A	A1TS	POPTR_0010s09860	POPTR_0010s09860 (10)	scaffold_10:10484011-10484178(+) (10)	NA	Q55CU8	Random slug protein 5	AT1G05370.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g11950.1	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr1g132520.1	"Cellular retinaldehyde-binding/triple function, C-terminal; Phosphatidylinositol transfer protein-like, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134039.1.A1_at	A	A1TS	POPTR_0017s01970	POPTR_0017s01970 (11)	scaffold_17:1447618-1448000(+) (11)	NA	Q9M9P0	Expansin-A13	AT3G03220.1	expansin A13 	LOC_Os04g49410.1	"expansin precursor, putative, expressed"	Medtr5g084850.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134048.1.S1_at	A	A1TS	POPTR_0010s20580	POPTR_0010s20580 (10)	scaffold_10:18103924-18104199(+) (10)	NA	Q54TS4	Protein YIPF1 homolog	AT2G39805.1	Integral membrane Yip1 family protein 	LOC_Os05g38180.4	"Yip1 domain containing protein, expressed"	Medtr5g088310.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134049.1.A1_at	A	A1TS	POPTR_0008s07580	POPTR_0008s07580 (11)	scaffold_8:4632285-4632479(-) (11)	NA	Q10HL3	Endoribonuclease Dicer homolog 2a	AT3G03300.3	dicer-like 2 	LOC_Os03g38740.1	"Dicer, putative, expressed"	Medtr2g129960.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0004525|ribonuclease III activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.134057.1.A1_s_at	A	A1TS	POPTR_0014s12210	POPTR_0014s12210 (11)	scaffold_14:9025625-9025878(-) (11)	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os03g22180.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.134058.1.A1_at	A	A1TS	POPTR_0017s12600	POPTR_0017s12600 (11)	scaffold_17:12807999-12809543(+) (11)	NA	NA	NA	AT5G39380.1	Plant calmodulin-binding protein-related 	LOC_Os03g11290.1	expressed protein	Medtr6g013960.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134095.1.A1_at	A	A1TS	POPTR_0017s06570	POPTR_0017s06570 (11)	scaffold_17:4992857-4993336(+) (11)	POPTR_0007s02590 (6)	O23044	Peroxidase 3	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os06g46799.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.134116.1.A1_at	A	A1TS	POPTR_0007s09640	POPTR_0007s09640 (11)	scaffold_7:9145451-9147255(-) (11)	NA	Q3U2J5	Uncharacterized protein C2orf34 homolog	AT4G35987.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g14020.1	"AGAP009131-PA, putative, expressed"	Medtr8g089670.1	"Uncharacterized protein C2orf34 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134120.1.A1_at	A	A1TS	POPTR_0005s18040	POPTR_0005s18040 (11)	scaffold_5:16051910-16052029(-) (11)	NA	NA	NA	AT3G50620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr5g017700.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134131.1.A1_at	A	A1TS	POPTR_0006s03380	POPTR_0006s03380 (11)	scaffold_6:2142178-2143058(-) (11)	NA	NA	NA	AT2G40820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 203 Blast hits to 195 proteins in 64 species: Archae - 3; Bacteria - 13; Metazoa - 26; Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	LOC_Os01g59130.2	"proline-rich family protein, putative, expressed"	Medtr7g106120.1	"3'-5'-exoribonuclease/ RNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134132.1.A1_at	A	A1TS	POPTR_0009s01700	POPTR_0009s01700 (9)	scaffold_9:2207760-2208263(-) (11)	NA	Q9ZTX9	Auxin response factor 4	AT5G60450.1	auxin response factor 4 	LOC_Os04g36054.1	"auxin response factor 9, putative, expressed"	Medtr4g081060.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.134134.1.A1_at	A	A1TS	POPTR_0014s12530	POPTR_0014s12530 (11)	scaffold_14:9226316-9227026(-) (11)	NA	P54278	Mismatch repair endonuclease PMS2	AT4G02460.1	"DNA mismatch repair protein, putative "	LOC_Os02g37920.1	expressed protein	Medtr1g108570.1	"ATP-binding region, ATPase-like; ; ; ; ; "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.134162.1.A1_at	A	A1TS	POPTR_0004s06560	POPTR_0004s06560 (10)	scaffold_4:5283936-5284987(+) (10)	NA	Q8LEB2	Alcohol dehydrogenase-like 6	AT5G24760.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g42520.2	"dehydrogenase, putative, expressed"	Medtr6g083950.1	"Alcohol dehydrogenase, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.13417.1.S1_at	A	A1TS	POPTR_0010s11290	POPTR_0010s11290 (9)	scaffold_10:11609733-11610181(+) (9)	NA	Q5RCZ2	Cytochrome b561	AT1G14730.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os03g50820.1	"cytochrome b561, putative, expressed"	CU633465_7.1	Cytochrome b561 / ferric reductase transmembrane CU633465.7 43513-41380 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.134171.1.A1_s_at	A	A1TS	POPTR_0006s21600	POPTR_0006s21600 (11)	scaffold_6:20638475-20640350(-) (11)	NA	Q54SW1	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179	AT3G11780.1	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134176.1.A1_at	A	A1TS	POPTR_0012s03570	POPTR_0012s03570 (11)	scaffold_12:2807438-2810496(-) (11)	NA	Q9LD37	"Probable cyclic nucleotide-gated ion channel 20, chloroplastic"	AT3G17700.1	cyclic nucleotide-binding transporter 1 	LOC_Os02g53340.2	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr6g074020.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.134187.6.A1_at	A	A1TA	POPTR_0002s21450	POPTR_0002s21450 (11)	scaffold_2:17953532-17957279(-) (11)	NA	NA	NA	AT2G32580.1	Protein of unknown function (DUF1068) 	LOC_Os03g56610.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134212.1.A1_at	A	A1TS	POPTR_0008s10070	POPTR_0008s10070 (11)	scaffold_8:6283118-6283852(-) (11)	NA	Q8RWB8	E3 ubiquitin-protein ligase UPL6	AT3G17205.3	ubiquitin protein ligase 6 	LOC_Os05g06690.2	"HECT-domain domain containing protein, expressed"	Medtr2g037340.1	IQ calmodulin-binding region; HECT 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.134213.1.A1_at	A	A1TS	POPTR_0001s44880	POPTR_0001s44880 (11)	scaffold_1:45251971-45253071(-) (11)	NA	Q5M759	Vacuolar protein sorting-associated protein 22 homolog 1	AT4G27040.4	EAP30/Vps36 family protein 	LOC_Os09g36020.1	"EAP30/Vps36 family domain containing protein, expressed"	Medtr3g068260.1	EAP30 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134221.1.A1_at	A	A1TS	POPTR_0005s12520	POPTR_0005s12520 (10)	scaffold_5:9288846-9289325(-) (10)	NA	Q9FL03	Scarecrow-like protein 4	AT5G66770.1	GRAS family transcription factor 	LOC_Os03g51330.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g107060.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134230.1.A1_at	A	A1MS	POPTR_0016s04850	POPTR_0016s04850 (9)	scaffold_16:2923880-2925194(+) (11)//scaffold_453:13203-13617(-) (10)	NA	NA	NA	AT5G06810.1	Mitochondrial transcription termination factor family protein 	LOC_Os08g40630.2	"mTERF domain containing protein, expressed"	Medtr7g111650.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134231.1.A1_at	A	A1TS	POPTR_0012s00990	POPTR_0012s00990 (11)	scaffold_12:661256-661804(-) (11)	NA	Q9FLX3	F-box protein At5g52880	AT5G52880.1	F-box family protein 	LOC_Os05g45040.1	"OsFBX170 - F-box domain containing protein, expressed"	Medtr1g125970.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134238.1.A1_a_at	A	A1TS	POPTR_0002s19610	POPTR_0002s19610 (11)	scaffold_2:15561901-15562315(+) (11)	NA	NA	NA	AT2G47350.1	HIT zinc finger ;PAPA-1-like conserved region 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134238.1.A1_at	A	A1TS	POPTR_0002s19610	POPTR_0002s19610 (9)	scaffold_2:15561993-15562397(+) (9)	NA	NA	NA	AT2G47350.1	HIT zinc finger ;PAPA-1-like conserved region 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134240.1.A1_at	A	A1TS	POPTR_0010s14870	POPTR_0010s14870 (11)	scaffold_10:14341694-14343361(+) (11)	NA	Q96JB2	Conserved oligomeric Golgi complex subunit 3	AT1G73430.2	sec34-like family protein 	LOC_Os08g34970.1	"conserved oligomeric Golgi complex component 3, putative, expressed"	Medtr8g133280.1	Sec34-like protein 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane||GO:0005801|cis-Golgi network
PtpAffx.134252.1.A1_at	A	A1TS	POPTR_0019s10040	POPTR_0019s10040 (11)	scaffold_19:11673994-11674293(+) (11)	NA	O81852	"Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic"	AT4G19710.2	aspartate kinase-homoserine dehydrogenase ii 	LOC_Os08g25390.1	"bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g132760.2	"Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016491|oxidoreductase activity||GO:0050661|NADP or NADPH binding	NA
PtpAffx.134258.1.A1_at	A	A1TS	POPTR_0011s00520	POPTR_0011s00520 (10)	scaffold_11:235413-235938(+) (10)	NA	Q93V99	Homeobox-leucine zipper protein PROTODERMAL FACTOR 2	AT4G04890.1	protodermal factor 2 	LOC_Os04g53540.4	"homeobox and START domains containing protein, putative, expressed"	Medtr2g103900.2	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.134259.1.A1_at	A	A1TS	POPTR_0010s20760	POPTR_0010s20760 (11)	scaffold_10:18227234-18227656(+) (11)	NA	NA	NA	AT3G11420.1	Protein of unknown function (DUF604) 	LOC_Os03g16334.1	"fringe-related protein, putative, expressed"	Medtr7g088020.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134267.1.A1_s_at	A	A1TS	POPTR_0006s18630	POPTR_0006s18630 (11)	scaffold_6:17198665-17199069(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G52450.1	MATE efflux family protein 	LOC_Os06g29844.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.134273.1.A1_at	A	A1MS	POPTR_0012s02580	POPTR_0012s02580 (11)	scaffold_12:2123582-2124050(+) (11)	NA	Q9LFL5	Pentatricopeptide repeat-containing protein At5g16860	AT5G16860.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g10800.1	"pentatricopeptide, putative, expressed"	Medtr1g008660.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134284.1.A1_at	A	A1TS	POPTR_0006s27850	POPTR_0006s27850 (11)	scaffold_6:25704739-25705264(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134305.1.A1_at	A	A1TA	POPTR_0006s19840	POPTR_0006s19840 (11)	scaffold_6:18852591-18853055(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134307.1.A1_at	A	A1TS	POPTR_0001s04740	POPTR_0001s04740 (10)	scaffold_1:3661597-3662169(-) (10)//scaffold_1020:2281-2835(+) (10)//scaffold_1020:6366-6936(+) (10)	POPTR_1020s00210 (7)//POPTR_1020s00200 (6)	Q10PP8	Metal tolerance protein 4	AT3G58060.1	Cation efflux family protein 	LOC_Os03g12530.1	"cation efflux family protein, putative, expressed"	Medtr3g083790.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.134316.1.A1_at	A	A1TS	POPTR_0030s00210	POPTR_0030s00210 (9)	scaffold_30:23916-24156(-) (9)	NA	Q5F3K4	WD repeat-containing protein 48	AT3G05090.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g06810.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g140230.1	WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134322.1.A1_at	A	A1TS	POPTR_0452s00200	POPTR_0452s00200 (11)	scaffold_452:140-549(+) (11)	NA	NA	NA	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134328.1.A1_at	A	A1TS	POPTR_0002s13900	POPTR_0002s13900 (11)	scaffold_2:10307591-10307887(-) (11)	NA	Q9QZR0	E3 ubiquitin-protein ligase RNF25	AT3G60300.1	RWD domain-containing protein 	LOC_Os11g35870.1	"RWD domain containing protein, expressed"	Medtr5g027310.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134329.1.A1_at	A	A1TS	POPTR_0010s19480	POPTR_0010s19480 (11)	scaffold_10:17364548-17364939(-) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134338.1.A1_at	A	A1TS	POPTR_0016s12740	POPTR_0016s12740 (11)	scaffold_16:12110113-12110633(-) (11)	NA	Q9UI26	Importin-11	AT3G08960.1	ARM repeat superfamily protein 	LOC_Os07g49260.1	"importin subunit beta, putative, expressed"	Medtr7g075610.1	"Importin-beta, N-terminal "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.134341.1.A1_at	A	A1TS	POPTR_0019s14080	POPTR_0019s14080 (11)	scaffold_19:14842040-14842499(+) (11)	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT4G28100.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g37156.1	expressed protein	Medtr2g102990.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134351.1.A1_at	A	A1TS	POPTR_0019s07820	POPTR_0019s07820 (11)	scaffold_19:9043972-9044013(-) (11)	NA	Q9M9M9	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	AT3G03100.1	"NADH:ubiquinone oxidoreductase, 17.2kDa subunit "	LOC_Os10g42840.1	"NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed"	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity||GO:0009055|electron carrier activity	GO:0016020|membrane
PtpAffx.134355.1.A1_at	A	A1TS	POPTR_0012s00390	POPTR_0012s00390 (11)	scaffold_12:128757-129078(+) (11)	NA	NA	NA	AT5G24660.1	response to low sulfur 2 	NA	NA	Medtr3g122000.1	"UP-9A, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134361.1.A1_s_at	A	A1TS	POPTR_0003s14170	POPTR_0003s14170 (11)	scaffold_3:14303954-14304052(+) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT1G64500.1	Glutaredoxin family protein 	LOC_Os01g13480.1	"glutaredoxin, putative, expressed"	Medtr7g127470.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.134364.1.S1_a_at	A	A1TS	POPTR_0012s03350	POPTR_0012s03350 (11)	scaffold_12:2653303-2653605(-) (11)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.134364.2.S1_at	A	A1TS	POPTR_0012s03350	POPTR_0012s03350 (11)	scaffold_12:2653225-2653531(-) (11)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.134366.1.A1_at	A	A1TS	POPTR_0006s11000	POPTR_0006s11000 (11)	scaffold_6:8346734-8347795(-) (11)	NA	NA	NA	AT2G38570.1	CONTAINS InterPro DOMAIN/s: PRC-barrel-like (InterPro:IPR011033); Has 300 Blast hits to 300 proteins in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). 	LOC_Os03g21630.2	"PRC-barrel domain protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134377.1.A1_at	A	A1TS	POPTR_0010s00750	POPTR_0010s00750 (11)	scaffold_10:462589-463093(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g20830.1	"heavy metal-associated domain containing protein, expressed"	Medtr8g138440.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.13438.1.S1_s_at	A	A1TS	POPTR_0017s11530	POPTR_0017s11530 (11)	scaffold_17:11267294-11268842(-) (11)	NA	Q9LHA4	V-type proton ATPase subunit d2	AT3G28715.1	"ATPase, V0/A0 complex, subunit C/D "	LOC_Os01g40470.1	"vacuolar ATP synthase subunit d, putative, expressed"	Medtr7g009000.1	"H+-transporting two-sector ATPase, C (AC39) subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.134385.1.A1_at	A	A1TS	POPTR_0017s11760	POPTR_0017s11760 (11)	scaffold_17:11585891-11586898(+) (11)	NA	Q9CA64	Transcription factor bHLH135	AT3G28857.1	basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g26460.1	"bHLH family protein, putative, expressed"	Medtr5g040160.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.13439.1.S1_s_at	A	A1TS	POPTR_0013s14800	POPTR_0013s14800 (11)	scaffold_13:14919810-14920360(-) (11)	NA	Q9SS94	Cell division control protein 48 homolog C	AT3G01610.1	cell division cycle 48C 	LOC_Os06g01980.1	"AAA family ATPase, putative, expressed"	Medtr2g007090.1	"Peptidase M14, carboxypeptidase A; AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.134399.1.A1_at	A	A1TS	POPTR_0008s14470	POPTR_0008s14470 (11)	scaffold_8:9606626-9606814(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1344.1.A1_at	A	A1TS	POPTR_0003s16530	POPTR_0003s16530 (9)	scaffold_3:16115043-16116055(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G13160.1	Protein kinase superfamily protein 	LOC_Os02g30900.1	"protein kinase domain containing protein, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13443.2.S1_at	A	A2TS	POPTR_0017s05910	POPTR_0017s05910 (10)//POPTR_2108s00200 (9)	scaffold_17:4579213-4579600(+) (10)//scaffold_2108:183-570(-) (10)	NA	NA	NA	AT2G43310.1	Ribosomal L18p/L5e family protein 	NA	NA	Medtr2g118290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134432.1.A1_at	A	A1TS	POPTR_0012s03730	POPTR_0012s03730 (11)	scaffold_12:2945616-2946139(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G01940.1	C2H2-like zinc finger protein 	LOC_Os09g27650.2	"ZOS9-14 - C2H2 zinc finger protein, expressed"	Medtr8g018830.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.134444.1.A1_s_at	A	A1TS	POPTR_0001s13490	POPTR_0001s13490 (11)	scaffold_1:10564860-10565393(-) (11)	NA	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os08g42080.1	"ACR5, putative, expressed"	Medtr7g022460.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.13445.1.A1_at	A	A1TS	POPTR_0005s17970	POPTR_0005s17970 (10)	scaffold_5:15837073-15837588(-) (10)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.1	Cysteine proteinases superfamily protein 	LOC_Os05g11770.1	"ulp1 protease family protein, putative, expressed"	Medtr3g149330.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.134451.1.A1_at	A	A1TS	POPTR_0006s00570	POPTR_0006s00570 (11)	scaffold_6:303320-303610(+) (11)	NA	Q0DCT8	Protein kinase G11A	AT5G47750.1	D6 protein kinase like 2 	LOC_Os08g38320.3	"AGC_PVPK_like_kin82y.14 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.134453.1.A1_at	A	A1MS	POPTR_0013s13040	POPTR_0013s13040 (11)	scaffold_13:13605004-13605270(-) (11)	NA	NA	NA	AT5G60030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr1g020400.1	"AGAP002737-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134458.1.A1_at	A	A1TS	POPTR_0015s07640	POPTR_0015s07640 (11)	scaffold_15:8942585-8942626(+) (11)	NA	Q02283	Homeobox-leucine zipper protein HAT5	AT3G01470.1	homeobox 1 	LOC_Os02g49700.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g113090.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.13446.1.S1_at	A	A1TS	POPTR_0018s11350	POPTR_0018s11350 (11)	scaffold_18:12123968-12124505(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134474.1.A1_at	A	A1TS	POPTR_0005s09410	POPTR_0005s09410 (11)	scaffold_5:6562364-6563871(-) (11)	NA	Q0WPR4	Serine carboxypeptidase-like 34	AT5G23210.1	serine carboxypeptidase-like 34 	LOC_Os02g42310.1	"OsSCP8 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g100960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.134482.1.A1_at	A	A1TS	POPTR_0003s10220	POPTR_0003s10220 (11)	scaffold_3:11300935-11301457(-) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1345.1.A1_at	A	A1TS	POPTR_0017s11590	POPTR_0017s11590 (9)	scaffold_17:11382027-11382546(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT1G74690.1	IQ-domain 31 	LOC_Os05g45930.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g112590.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134503.1.A1_at	A	A1TS	POPTR_0016s01980	POPTR_0016s01980 (11)	scaffold_16:907873-908351(-) (11)	NA	Q9LIE5	Protein FAR-RED ELONGATED HYPOCOTYL 3	AT3G22170.2	far-red elongated hypocotyls 3 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.13452.1.S1_at	A	A1TS	POPTR_0007s04570	POPTR_0007s04570 (11)	scaffold_7:2830852-2838910(+) (11)	POPTR_0007s04560 (6)	P57681	Probable prenylcysteine oxidase	AT5G63910.1	farnesylcysteine lyase 	LOC_Os04g59630.1	"prenylcysteine oxidase 1 precursor, putative, expressed"	Medtr3g142890.1	Prenylcysteine lyase 	GO:0030328|prenylcysteine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	"GO:0016670|""oxidoreductase activity, acting on sulfur group of donors, oxygen as acceptor"""	NA
PtpAffx.134522.1.A1_at	A	A1TS	POPTR_0013s01340	POPTR_0013s01340 (9)	scaffold_13:749554-749676(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134524.1.A1_at	A	A1TS	POPTR_0014s09770	POPTR_0014s09770 (11)	scaffold_14:7284467-7284779(+) (11)	NA	Q40191	Ras-related protein Rab11A	AT1G01200.1	RAB GTPase homolog A3 	LOC_Os09g35860.1	"ras-related protein, putative, expressed"	Medtr8g029570.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.134527.1.A1_at	A	A2TS	POPTR_0016s03390	POPTR_0016s03390 (11)//POPTR_0016s04660 (9)	scaffold_16:1758356-1758822(+) (11)//scaffold_16:2770022-2770465(-) (9)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.134537.1.A1_a_at	A	A2TS	POPTR_0001s29840	POPTR_0001s29840 (11)//POPTR_0001s29870 (9)	scaffold_1:28417881-28418507(-) (9)//scaffold_1:28432004-28432775(-) (11)//scaffold_1:28456027-28457063(-) (9)//scaffold_1:28467958-28468719(-) (11)//scaffold_1:28501392-28502126(+) (11)	NA	Q9C7Z9	Serine carboxypeptidase-like 18	AT1G73300.1	serine carboxypeptidase-like 2 	LOC_Os11g42390.1	"OsSCP64 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g022160.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.134543.1.A1_a_at	A	A1TS	POPTR_0006s04510	POPTR_0006s04510 (10)	scaffold_6:3074998-3075324(+) (10)	NA	Q9M2L4	"Putative calcium-transporting ATPase 11, plasma membrane-type"	AT3G57330.1	autoinhibited Ca2+-ATPase 11 	LOC_Os12g04220.1	"calcium-transporting ATPase, plasma membrane-type, putative"	Medtr4g118290.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.134543.1.A1_at	A	A1TS	POPTR_0006s04510	POPTR_0006s04510 (10)	scaffold_6:3074249-3074984(+) (10)	NA	Q9M2L4	"Putative calcium-transporting ATPase 11, plasma membrane-type"	AT3G57330.1	autoinhibited Ca2+-ATPase 11 	LOC_Os12g04220.1	"calcium-transporting ATPase, plasma membrane-type, putative"	Medtr4g118290.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.134549.1.S1_at	A	A1TS	POPTR_0003s13790	POPTR_0003s13790 (11)	scaffold_3:14075719-14076071(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G41800.1	Transmembrane amino acid transporter family protein 	LOC_Os01g43320.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13455.1.S1_at	A	A1TS	POPTR_0009s16510	POPTR_0009s16510 (10)	scaffold_9:12519744-12521593(+) (10)	NA	Q9ZQH1	Probable calcium-binding protein CML48	AT2G27480.1	Calcium-binding EF-hand family protein 	LOC_Os08g44390.2	"EF hand family protein, putative, expressed"	Medtr2g107710.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134559.1.A1_at	A	A1TS	POPTR_0013s11160	POPTR_0013s11160 (11)	scaffold_13:11835038-11835363(-) (11)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65110.1	"POT family protein, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.134562.1.A1_at	A	A1TS	POPTR_0018s07360	POPTR_0018s07360 (11)	scaffold_18:7569685-7571898(+) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G43220.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.1	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134562.2.A1_a_at	A	A1TS	POPTR_0018s07360	POPTR_0018s07360 (11)	scaffold_18:7569601-7569678(+) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G43220.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.1	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134566.1.A1_at	A	A1TS	POPTR_0002s25580	POPTR_0002s25580 (11)	scaffold_2:22658414-22658569(-) (11)	NA	P50053	Ketohexokinase	AT4G28706.3	pfkB-like carbohydrate kinase family protein 	LOC_Os08g45180.1	"kinase, pfkB family, putative, expressed"	Medtr7g117720.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134567.1.A1_at	A	A1TA	POPTR_0019s00960	POPTR_0019s00960 (11)	scaffold_19:733174-733599(-) (11)	NA	NA	NA	AT5G14930.2	senescence-associated gene 101 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr6g008690.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.134577.1.A1_at	A	A1TS	POPTR_0002s14580	POPTR_0002s14580 (10)	scaffold_2:10852439-10852705(+) (10)	NA	NA	NA	AT3G60680.1	Plant protein of unknown function (DUF641) 	LOC_Os10g36400.1	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134586.1.A1_at	A	A1TS	POPTR_0009s06080	POPTR_0009s06080 (11)	scaffold_9:5990259-5991348(+) (11)	NA	Q0WRX3	Serine carboxypeptidase-like 40	AT3G63470.1	serine carboxypeptidase-like 40 	LOC_Os07g46350.1	"OsSCP40 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr3g040960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.134594.1.A1_s_at	A	A1TS	POPTR_0001s01610	POPTR_0001s01610 (11)	scaffold_1:1207684-1208020(+) (11)	NA	Q03516	Uncharacterized protein RSN1	AT1G32090.1	early-responsive to dehydration stress protein (ERD4) 	LOC_Os10g42820.1	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g027680.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.134612.1.A1_at	A	A1TS	POPTR_0002s05800	POPTR_0002s05800 (9)	scaffold_2:3805943-3806323(+) (10)	NA	NA	NA	AT1G06660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g56590.1	expressed protein	Medtr5g098090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134617.1.A1_at	A	A1TS	POPTR_0005s05250	POPTR_0005s05250 (11)	scaffold_5:3477396-3477624(+) (11)	NA	NA	NA	AT5G28150.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr7g140620.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13462.1.S1_at	A	A1TS	POPTR_0009s15710	POPTR_0009s15710 (10)	scaffold_9:12081341-12081605(-) (11)	NA	O93309	Structural maintenance of chromosomes protein 3	AT2G27170.2	Structural maintenance of chromosomes (SMC) family protein 	LOC_Os02g04050.1	"chromosome segregation protein, putative, expressed"	Medtr5g094200.1	"condensin complex component SMC3, related "	GO:0016032|viral reproduction||GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane||GO:0005694|chromosome
PtpAffx.13465.1.S1_a_at	A	A1TS	POPTR_0002s08280	POPTR_0002s08280 (11)	scaffold_2:5779935-5780959(+) (11)	NA	Q9SFH9	"Delta-aminolevulinic acid dehydratase, chloroplastic"	AT1G69740.2	Aldolase superfamily protein 	LOC_Os06g49110.3	"delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed"	Medtr3g100480.1	Delta-aminolevulinic acid dehydratase 	GO:0033014|tetrapyrrole biosynthetic process	GO:0004655|porphobilinogen synthase activity||GO:0046872|metal ion binding	NA
PtpAffx.134656.1.A1_at	A	A1TS	POPTR_0026s00240	POPTR_0026s00240 (11)	scaffold_26:270741-271001(+) (11)	NA	NA	NA	AT4G15800.1	ralf-like 33 	LOC_Os12g35670.1	"RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed"	Medtr8g138780.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134659.1.A1_at	A	A1TS	POPTR_0011s09300	POPTR_0011s09300 (11)	scaffold_11:11558516-11558728(-) (11)	NA	Q9UHW9	Solute carrier family 12 member 6	AT1G30450.2	cation-chloride co-transporter 1 	LOC_Os08g23440.1	"amino acid permease family protein, putative, expressed"	Medtr2g055760.1	Interleukin-6/G-CSF/MGF; Amino acid permease-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134679.1.A1_at	A	A1TA	POPTR_0016s13550	POPTR_0016s13550 (11)	scaffold_16:12730761-12731048(+) (11)	NA	Q9M007	Cation/H(+) antiporter 27	AT5G01680.1	cation/H+ exchanger 26 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr5g082360.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.134681.1.A1_at	A	A1TS	POPTR_0004s01520	POPTR_0004s01520 (10)	scaffold_4:869224-869746(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g146730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13469.1.S1_at	A	A1TS	POPTR_0006s16610	POPTR_0006s16610 (10)	scaffold_6:14484090-14484596(-) (10)	NA	Q07469	Bark storage protein A	AT4G28940.1	Phosphorylase superfamily protein 	LOC_Os05g13970.2	"phosphorylase domain containing protein, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.134696.1.A1_at	A	A1TS	POPTR_0006s08510	POPTR_0006s08510 (11)	scaffold_6:6198456-6198742(+) (11)	NA	NA	NA	AT3G09410.1	Pectinacetylesterase family protein 	LOC_Os05g02120.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134700.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13470.1.S1_s_at	A	A1TS	POPTR_0002s02010	POPTR_0002s02010 (11)	scaffold_2:1077172-1077395(+) (11)	NA	O65351	Subtilisin-like protease	AT1G20160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30458.1	"subtilisin-like protease, putative, expressed"	Medtr3g139400.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.134708.1.A1_at	A	A1TS	POPTR_0014s10370	POPTR_0014s10370 (11)	scaffold_14:7753372-7766374(-) (11)	POPTR_0014s10340 (6)	Q7GCL7	NAC domain-containing protein 74	AT5G24590.2	TCV-interacting protein 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.134721.1.S1_at	A	A1TS	POPTR_0015s00470	POPTR_0015s00470 (9)	scaffold_15:268586-269064(+) (11)	NA	Q9XGN1	Protein TRANSPARENT TESTA GLABRA 1	AT5G24520.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g45810.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g122570.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134742.1.S1_at	A	A1MS	POPTR_0016s05660	POPTR_0016s05660 (11)	scaffold_16:3589637-3590149(-) (11)	NA	NA	NA	AT3G57400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52500.1); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134772.1.S1_s_at	A	A1TS	POPTR_0012s07160	POPTR_0012s07160 (11)	scaffold_12:7935513-7935891(+) (11)	NA	Q84K47	ABC transporter A family member 2	AT3G47730.1	ATP-binding cassette A2 	LOC_Os08g30740.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g149810.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.134776.1.S1_at	A	A1TS	POPTR_0015s03790	POPTR_0015s03790 (9)	scaffold_15:3676999-3679296(-) (9)	NA	NA	NA	AT1G67060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). 	LOC_Os02g12870.1	expressed protein	Medtr7g093340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134798.1.S1_at	A	A1TS	POPTR_0002s00550	POPTR_0002s00550 (11)	scaffold_2:215546-216354(+) (11)	NA	NA	NA	AT1G76510.2	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr3g159760.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.134832.1.S1_s_at	A	A1TS	POPTR_0010s15000	POPTR_0010s15000 (11)	scaffold_10:14412743-14413989(-) (11)	NA	P78316	Nucleolar protein 14	AT1G69070.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). 	LOC_Os03g40110.1	"nop14-like family protein, expressed"	Medtr1g043170.1	Nop14-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134834.1.S1_at	A	A1TS	POPTR_0005s23730	POPTR_0005s23730 (11)	scaffold_5:22489325-22490239(+) (11)	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT3G63400.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.13485.1.A1_at	A	A1TS	POPTR_0011s04470	POPTR_0011s04470 (11)	scaffold_11:4447704-4448174(+) (11)	NA	Q38945	PAP-specific phosphatase HAL2-like	AT5G54390.1	HAL2-like 	LOC_Os02g56170.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.134857.1.S1_a_at	A	A2TS	POPTR_0001s03780	POPTR_0003s20690 (11)//POPTR_0001s03780 (11)	scaffold_1:3065594-3068494(-) (11)//scaffold_3:19164182-19167110(-) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134857.2.S1_at	A	A1TS	POPTR_0001s03780	POPTR_0001s03780 (11)	scaffold_1:3068140-3068575(-) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134863.1.S1_at	A	A1TS	POPTR_0009s10380	POPTR_0009s10380 (11)	scaffold_9:8917514-8918401(-) (11)	NA	Q9LDD8	"Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial"	AT4G34030.1	3-methylcrotonyl-CoA carboxylase 	LOC_Os08g32850.1	"methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed"	Medtr4g129940.1	"Acetyl-coenzyme A carboxyltransferase, C-terminal "	NA	GO:0016874|ligase activity	NA
PtpAffx.134873.1.S1_s_at	A	A1TS	POPTR_0005s05290	POPTR_0005s05290 (9)	scaffold_5:3498572-3498604(-) (9)	NA	Q5M7J9	Tetratricopeptide repeat protein 35	AT3G04830.1	Protein prenylyltransferase superfamily protein 	LOC_Os02g03470.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr7g140640.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134886.1.S1_at	A	A1TS	POPTR_0001s20770	POPTR_0001s20770 (11)	scaffold_1:18934658-18934857(-) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134886.1.S1_s_at	A	A2TS	POPTR_0001s20770	POPTR_0001s20770 (11)//POPTR_0003s02410 (11)	scaffold_1:18934212-18934916(-) (11)//scaffold_3:2498567-2499278(+) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134891.1.S1_at	A	A1TS	POPTR_0002s12630	POPTR_0002s12630 (9)	scaffold_2:9410316-9412233(+) (9)	NA	NA	NA	AT1G45976.1	S-ribonuclease binding protein 1 	LOC_Os03g15730.1	"S-RNase-binding protein, putative, expressed"	Medtr1g024220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13492.1.S1_at	A	A1TS	POPTR_0004s03700	POPTR_0004s03700 (11)	scaffold_4:2560737-2561158(-) (11)	NA	NA	NA	AT1G61240.4	Protein of unknown function (DUF707) 	LOC_Os07g37760.2	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g014270.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134925.1.S1_s_at	A	A1TS	POPTR_0016s04320	POPTR_0016s04320 (11)	scaffold_16:2499891-2501199(-) (11)	NA	Q5R8D8	DnaJ homolog subfamily C member 7	AT2G41520.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.134939.1.S1_s_at	A	A1TS	POPTR_0004s03490	POPTR_0004s03490 (10)	scaffold_4:2408543-2409461(+) (11)	NA	O65418	Anaphase-promoting complex subunit 4	AT4G21530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g54490.1	"nucleotide binding protein, putative, expressed"	Medtr4g125250.1	"nucleotide binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134941.1.A1_at	A	A1TS	POPTR_0003s14320	POPTR_0003s14320 (11)	scaffold_3:14415895-14416241(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01960.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134976.1.S1_at	A	A1TS	POPTR_0017s06920	POPTR_0017s06920 (11)	scaffold_17:5302819-5303299(-) (11)	NA	Q7XAS7	"Isoprene synthase, chloroplastic"	AT3G25810.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.13498.1.A1_s_at	A	A1TS	POPTR_0002s25000	POPTR_0002s25000 (11)	scaffold_2:22219276-22219721(+) (11)	NA	Q9SRT0	U-box domain-containing protein 9	AT3G07360.1	plant U-box 9 	LOC_Os02g28720.1	"spotted leaf 11, putative, expressed"	Medtr7g143240.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.134989.1.S1_at	A	A1TS	POPTR_0002s15350	POPTR_0002s15350 (9)	scaffold_2:11496162-11496632(+) (9)	NA	P93733	Phospholipase D beta 1	AT2G42010.1	phospholipase D beta 1 	LOC_Os10g38060.2	"phospholipase D, putative, expressed"	Medtr7g083520.1	"C2; Phospholipase D, plant "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.13499.1.S1_s_at	A	A1TS	POPTR_0002s25710	POPTR_0002s25710 (11)	scaffold_2:22804490-22804993(+) (11)	NA	Q7GB25	ABC transporter C family member 5	AT1G04120.1	multidrug resistance-associated protein 5 	LOC_Os03g04920.1	"multidrug resistance-associated protein, putative, expressed"	Medtr7g117090.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.135.1.S1_a_at	A	A1TS	POPTR_0003s10620	POPTR_0003s10620 (11)	scaffold_3:11549853-11550729(+) (11)	NA	Q0WWQ1	Autophagy-related protein 3	AT5G61500.1	autophagy 3 (APG3) 	LOC_Os01g10290.2	"autophagy-related protein 3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1350.1.S1_at	A	A1TS	POPTR_0019s12130	POPTR_0019s12130 (11)	scaffold_19:13268528-13268980(-) (11)	NA	Q9M2K6	"Glucan endo-1,3-beta-glucosidase-like protein 1"	AT3G58100.1	plasmodesmata callose-binding protein 5 	LOC_Os06g34660.1	"X8 domain containing protein, expressed"	AC233678_6.1	X8 AC233678.1 26026-27089 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1350.3.S1_at	A	A1TS	POPTR_0013s12380	POPTR_0013s12380 (11)	scaffold_13:13015167-13015374(-) (11)	NA	Q9M2K6	"Glucan endo-1,3-beta-glucosidase-like protein 1"	AT3G58100.1	plasmodesmata callose-binding protein 5 	LOC_Os06g34660.1	"X8 domain containing protein, expressed"	AC233675_22.1	X8 AC233675.1 104814-106418 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135027.1.S1_at	A	A1TS	POPTR_0013s03330	POPTR_0013s03330 (11)	scaffold_13:2033278-2033786(-) (11)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135079.1.S1_s_at	A	A1TS	POPTR_0004s10180	POPTR_0004s10180 (11)	scaffold_4:8753944-8755205(+) (11)	POPTR_0017s13890 (6)	Q55403	Thylakoid membrane protein slr0575	AT5G38660.1	acclimation of photosynthesis to  environment 	LOC_Os08g27010.1	"APE1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135080.1.S1_s_at	A	A1TS	POPTR_0015s02230	POPTR_0015s02230 (11)	scaffold_15:1565486-1566715(-) (11)	NA	Q9FGM0	"ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial"	AT5G53170.1	FTSH protease 11 	LOC_Os01g43150.1	"OsFtsH9  FtsH protease, homologue of AtFtsH11, expressed"	Medtr3g139890.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.135082.1.S1_at	A	A1TS	POPTR_0002s25900	POPTR_0002s25900 (11)	scaffold_2:22914924-22915103(+) (11)	NA	Q9FNC9	Mitochondrial import receptor subunit TOM22 homolog 2	AT5G43970.1	translocase of outer membrane 22-V 	LOC_Os02g29400.1	expressed protein	Medtr1g065560.1	"Mitochondrial import translocase, subunit Tom22 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135096.1.S1_at	A	A1TS	POPTR_0005s23150	POPTR_0005s23150 (11)	scaffold_5:21959399-21961167(-) (11)	NA	O31743	Ribosome biogenesis GTPase A	AT4G02790.1	GTP-binding family protein 	LOC_Os05g35540.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr7g108550.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.135096.2.S1_a_at	A	A1TS	POPTR_0005s23150	POPTR_0005s23150 (10)	scaffold_5:21961684-21962240(-) (10)	NA	O31743	Ribosome biogenesis GTPase A	AT4G02790.1	GTP-binding family protein 	LOC_Os05g35540.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr7g108550.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.1351.1.A1_at	A	A1TS	POPTR_0001s36870	POPTR_0001s36870 (11)	scaffold_1:35623701-35624153(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G30360.1	Early-responsive to dehydration stress protein (ERD4) 	LOC_Os07g05570.1	"ERD4 protein, putative, expressed"	Medtr2g022330.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.1351.2.S1_s_at	A	A1TS	POPTR_0018s01790	POPTR_0018s01790 (11)	scaffold_18:1634348-1634755(-) (11)	NA	Q8LF20	Putative clathrin assembly protein At2g25430	AT2G25430.1	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr3g137180.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.135110.1.S1_at	A	A1TS	POPTR_0010s09260	POPTR_0010s09260 (10)	scaffold_10:10129912-10131435(-) (10)	NA	NA	NA	AT4G14746.1	CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os03g06580.2	"MTN26L2 - MtN26 family protein precursor, expressed"	Medtr7g140750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13512.1.S1_s_at	A	A1TS	POPTR_0012s09650	POPTR_0012s09650 (9)	scaffold_12:10616269-10616301(-) (9)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117330.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.13512.2.S1_at	A	A1TS	POPTR_0012s09660	POPTR_0012s09660 (11)	scaffold_12:10627956-10630972(-) (11)	POPTR_0012s09670 (7)	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117340.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.135197.1.S1_at	A	A1TS	POPTR_0010s22010	POPTR_0010s22010 (11)	scaffold_10:19099451-19099968(+) (11)	NA	Q9LX66	Receptor-like protein kinase HERK 1	AT3G46290.1	hercules receptor kinase 1 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g079470.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1352.2.A1_at	A	A1TA	POPTR_0007s14250	POPTR_0007s14250 (9)	scaffold_7:14087584-14087851(+) (9)	NA	Q9T074	Phosphoenolpyruvate carboxykinase [ATP]	AT4G37870.1	phosphoenolpyruvate carboxykinase 1 	LOC_Os03g15050.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	Medtr5g032160.1	Phosphoenolpyruvate carboxykinase (ATP); 	GO:0044283|small molecule biosynthetic process||GO:0006094|gluconeogenesis||GO:0044281|small molecule metabolic process	GO:0004612|phosphoenolpyruvate carboxykinase (ATP) activity||GO:0005524|ATP binding	NA
PtpAffx.1352.3.A1_s_at	A	A1TS	POPTR_0007s14250	POPTR_0007s14250 (11)	scaffold_7:14087511-14088173(-) (11)	NA	Q9T074	Phosphoenolpyruvate carboxykinase [ATP]	AT4G37870.1	phosphoenolpyruvate carboxykinase 1 	LOC_Os03g15050.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	Medtr5g032160.1	Phosphoenolpyruvate carboxykinase (ATP); 	GO:0044283|small molecule biosynthetic process||GO:0006094|gluconeogenesis||GO:0044281|small molecule metabolic process	GO:0004612|phosphoenolpyruvate carboxykinase (ATP) activity||GO:0005524|ATP binding	NA
PtpAffx.135244.1.S1_at	A	A1TS	POPTR_0019s01800	POPTR_0019s01800 (11)	scaffold_19:1553931-1554297(-) (11)	NA	NA	NA	AT5G09840.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os12g06560.1	expressed protein	Medtr3g144270.1	Protein of unknown function DUF537 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135263.1.S1_s_at	A	A1TS	POPTR_0010s15250	POPTR_0010s15250 (11)	scaffold_10:14573712-14573773(+) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.135268.1.S1_s_at	A	A1TS	POPTR_0018s07050	POPTR_0018s07050 (11)	scaffold_18:7212766-7213080(-) (11)	NA	Q9LTR9	Glycylpeptide N-tetradecanoyltransferase 1	AT5G57020.1	myristoyl-CoA:protein N-myristoyltransferase 	LOC_Os01g51170.1	"glycylpeptide N-tetradecanoyltransferase 1, putative, expressed"	Medtr2g046620.1	Myristoyl-CoA:protein N-myristoyltransferase 	GO:0006499|N-terminal protein myristoylation	GO:0004379|glycylpeptide N-tetradecanoyltransferase activity	NA
PtpAffx.135278.1.S1_s_at	A	A1TS	POPTR_0015s04580	POPTR_0015s04580 (11)	scaffold_15:4790051-4791345(-) (11)	POPTR_0012s04440 (7)	Q5X4H5	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT3G17970.1	translocon at the outer membrane of chloroplasts 64-III 	LOC_Os03g50010.1	"toc64, putative, expressed"	Medtr4g154900.1	Amidase; 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.135280.1.S1_at	A	A1TS	POPTR_0011s11830	POPTR_0011s11830 (9)	scaffold_11:14625674-14626496(-) (11)	NA	NA	NA	AT1G64980.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os07g23120.1	expressed protein	Medtr5g007200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135298.1.A1_at	A	A1MS	POPTR_0001s45660	POPTR_0001s45660 (9)	scaffold_1:46230010-46230563(-) (11)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135307.1.S1_s_at	A	A1TS	POPTR_0006s04290	POPTR_0006s04290 (11)	scaffold_6:2933526-2933843(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135334.1.S1_at	A	A1TS	POPTR_0011s12520	POPTR_0011s12520 (11)	scaffold_11:15260035-15260468(-) (11)	NA	NA	NA	AT5G54400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.135334.2.S1_a_at	A	A2TS	POPTR_0001s41590	POPTR_0011s12520 (11)//POPTR_0001s41590 (11)	scaffold_1:41287630-41287752(-) (11)//scaffold_11:15260993-15261115(-) (11)	NA	NA	NA	AT5G54400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.135334.2.S1_at	A	A1MS	POPTR_0001s41590	POPTR_0001s41590 (11)	scaffold_1:41287555-41288058(-) (11)	NA	NA	NA	AT5G54400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.135336.1.S1_at	A	A1TS	POPTR_0016s03360	POPTR_0016s03360 (9)	scaffold_16:1740518-1740919(-) (9)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135336.2.S1_a_at	A	A1TS	POPTR_0016s03360	POPTR_0016s03360 (10)	scaffold_16:1740761-1740948(-) (10)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135336.2.S1_at	A	A1TS	POPTR_0016s03360	POPTR_0016s03360 (10)	scaffold_16:1740786-1742153(-) (10)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135342.1.S1_at	A	A1TS	POPTR_0006s05330	POPTR_0006s05330 (11)	scaffold_6:3759678-3762762(-) (11)	NA	Q60560	DNA-binding protein SMUBP-2	AT2G03270.1	"DNA-binding protein, putative "	LOC_Os03g38990.1	"DNA-binding protein, putative, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135343.1.S1_at	A	A1TS	POPTR_0010s18710	POPTR_0010s18710 (11)	scaffold_10:16880713-16883738(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G65450.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr7g099800.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.135344.1.S1_at	A	A1TS	POPTR_0012s09800	POPTR_0012s09800 (11)	scaffold_12:10724457-10725359(-) (11)	NA	Q14746	Conserved oligomeric Golgi complex subunit 2	AT4G24840.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g63250.1	"brefeldin A-sensitive Golgi protein-like, putative, expressed"	Medtr8g109320.1	"COG complex component, COG2 "	GO:0007030|Golgi organization||GO:0015031|protein transport	NA	GO:0016020|membrane
PtpAffx.135358.1.S1_s_at	A	A1TS	POPTR_0001s11780	POPTR_0001s11780 (11)	scaffold_1:9141196-9141557(+) (11)	NA	Q8VY90	Ethylene-responsive transcription factor ERF105	AT5G51190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.135361.1.S1_s_at	A	A1TS	POPTR_0008s07790	POPTR_0008s07790 (11)	scaffold_8:4783806-4784794(-) (11)	NA	Q9FQ19	Sister chromatid cohesion 1 protein 3	AT5G16270.1	sister chromatid cohesion 1 protein 4 	LOC_Os01g67250.2	"Rad21 / Rec8 like protein, putative, expressed"	Medtr7g090210.1	"Rad21/Rec8 like protein, C-terminal; Rad21/Rec8 like protein, N-terminal "	NA	NA	GO:0000228|nuclear chromosome
PtpAffx.135374.1.S1_at	A	A1TS	POPTR_0001s36650	POPTR_0001s36650 (11)	scaffold_1:35331342-35332263(+) (11)	NA	Q9FLP0	65-kDa microtubule-associated protein 1	AT5G55230.1	microtubule-associated proteins 65-1 	LOC_Os06g20370.1	"microtubule associated protein, putative, expressed"	Medtr5g101260.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135376.1.S1_at	A	A1TS	POPTR_0001s06210	POPTR_0001s06210 (11)	scaffold_1:4797252-4797373(-) (11)	NA	Q9SE45	Annexin D3	AT2G38760.1	annexin 3 	LOC_Os05g31760.1	"annexin, putative, expressed"	Medtr8g039910.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.135376.1.S1_s_at	A	A1TS	POPTR_0001s06210	POPTR_0001s06210 (11)	scaffold_1:4795616-4797238(-) (11)	NA	Q9SE45	Annexin D3	AT2G38760.1	annexin 3 	LOC_Os05g31760.1	"annexin, putative, expressed"	Medtr8g039910.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.13538.1.A1_at	A	A1TS	POPTR_0010s17200	POPTR_0010s17200 (10)	scaffold_10:15898385-15898723(+) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G14020.1	O-fucosyltransferase family protein 	LOC_Os01g07410.1	"growth regulator related protein, putative, expressed"	Medtr5g045270.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135397.1.S1_at	A	A1TS	POPTR_0001s13390	POPTR_0001s13390 (11)	scaffold_1:10478692-10479471(-) (11)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.135403.1.S1_s_at	A	A1TS	POPTR_0004s16120	POPTR_0004s16120 (11)	scaffold_4:16559329-16559376(-) (11)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr3g159470.2	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.135416.1.S1_s_at	A	A1TS	POPTR_0008s12930	POPTR_0008s12930 (11)	scaffold_8:8424885-8425350(-) (11)	NA	Q39221	SEC12-like protein 2	AT2G01470.1	SEC12P-like 2 protein 	LOC_Os11g39650.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135442.1.S1_at	A	A1TS	POPTR_0007s04220	POPTR_0007s04220 (11)	scaffold_7:2545204-2545738(-) (11)	NA	Q9FXA4	U-box domain-containing protein 26	AT1G49780.1	plant U-box 26 	LOC_Os04g35680.1	"U-box domain containing protein, expressed"	Medtr3g143260.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.13547.1.S1_s_at	A	A1TS	POPTR_0018s06510	POPTR_0018s06510 (11)	scaffold_18:6415346-6417430(-) (11)	NA	Q38998	Potassium channel AKT1	AT2G26650.1	K+ transporter 1 	LOC_Os01g45990.1	"potassium channel AKT1, putative, expressed"	Medtr8g119290.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.135486.1.S1_s_at	A	A1TS	POPTR_0393s00210	POPTR_0393s00210 (11)	scaffold_393:4359-12724(+) (11)	POPTR_0003s18610 (6)	Q83A83	Cystathionine beta-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.13550.1.S1_at	A	A1MA	POPTR_0012s04430	POPTR_0012s04430 (11)	scaffold_12:3646428-3646935(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135514.1.S1_at	A	A1TS	POPTR_0015s03470	POPTR_0015s03470 (10)	scaffold_15:3026123-3029558(+) (10)	NA	P0C895	LRR repeats and ubiquitin-like domain-containing protein At2g30105	AT5G07910.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g11360.2	"leucine rich repeat containing protein, expressed"	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.135582.1.A1_at	A	A1TS	POPTR_0002s00380	POPTR_0002s00380 (11)	scaffold_2:100990-101281(-) (11)	NA	Q6DFB8	Tetratricopeptide repeat protein 37	AT1G76630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g40050.1	"tetratricopeptide repeat domain containing protein, expressed"	AC151525_24.1	Tetratricopeptide-like helical AC151525.18 129753-118532 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135584.1.S1_at	A	A1TS	POPTR_0002s06080	POPTR_0002s06080 (11)	scaffold_2:4072482-4073247(+) (11)	NA	Q9SJG9	Mitogen-activated protein kinase 20	AT2G42880.1	MAP kinase 20 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr3g119710.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.135595.1.S1_at	A	A1TS	POPTR_0005s11830	POPTR_0005s11830 (11)	scaffold_5:8605037-8605349(+) (11)	NA	P93031	"GDP-mannose 4,6 dehydratase 2"	AT3G51160.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g04620.1	"GDP-mannose 4,6 dehydratase 2, putative, expressed"	Medtr5g021700.1	"NAD-dependent epimerase/dehydratase; Short-chain dehydrogenase/reductase SDR; GDP-mannose 4,6-dehydratase "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.1356.2.A1_a_at	A	A1TS	POPTR_0001s38470	POPTR_0001s38470 (11)	scaffold_1:37598500-37598724(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1356.4.A1_at	A	A1TA	POPTR_0001s38470	POPTR_0001s38470 (11)	scaffold_1:37598544-37598790(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135645.1.S1_at	A	A1TS	POPTR_0009s06140	POPTR_0009s06140 (10)	scaffold_9:6016347-6017139(+) (11)	NA	Q9SV01	F-box/WD-40 repeat-containing protein At3g52030	AT3G52030.2	F-box family protein with WD40/YVTN repeat doamin 	LOC_Os11g07970.1	"OsFBW2 - F-box domain and WD40 repeat containing protein, expressed"	Medtr3g040900.1	Cyclin-like F-box; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135648.1.S1_s_at	A	A1TS	POPTR_0005s21230	POPTR_0005s21230 (11)	scaffold_5:20345513-20345740(-) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G42140.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os04g58960.1	"regulator of chromosome condensation, putative, expressed"	Medtr1g125660.1	"Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135649.1.S1_s_at	A	A1TS	POPTR_0019s07530	POPTR_0019s07530 (11)	scaffold_19:8560521-8561865(-) (11)	NA	Q7X996	CBL-interacting protein kinase 2	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.135655.1.S1_at	A	A1TS	POPTR_0016s02130	POPTR_0016s02130 (11)	scaffold_16:1025996-1027327(+) (11)	NA	NA	NA	AT3G22270.1	Topoisomerase II-associated protein PAT1 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135663.1.S1_s_at	A	A1TS	POPTR_0010s16250	POPTR_0010s16250 (11)	scaffold_10:15229808-15230055(-) (11)	NA	NA	NA	AT3G17340.1	ARM repeat superfamily protein 	LOC_Os11g47320.1	"protein transporter, putative, expressed"	Medtr8g134520.1	"protein transporter, related "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.135670.1.S1_at	A	A1TS	POPTR_0015s08160	POPTR_0015s08160 (10)	scaffold_15:9428970-9429793(+) (10)	NA	Q96AV8	Transcription factor E2F7	AT3G48160.2	DP-E2F-like 1 	LOC_Os02g50630.1	"E2F family transcription factor protein, putative, expressed"	Medtr8g124980.2	Winged helix repressor DNA-binding 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
PtpAffx.135671.1.S1_at	A	A1TS	POPTR_0005s25605	POPTR_0005s25605 (10)	scaffold_5:23839668-23841845(-) (10)	NA	P53849	Zinc finger protein GIS2	AT1G75560.2	zinc knuckle (CCHC-type) family protein 	LOC_Os10g39820.1	"zinc knuckle domain containing protein, expressed"	Medtr3g162990.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.135675.1.S1_at	A	A1TS	POPTR_0009s13930	POPTR_0009s13930 (11)	scaffold_9:11001946-11004784(-) (11)	NA	O88060	Translation initiation factor IF-3	AT1G34360.1	translation initiation factor 3 (IF-3) family protein 	LOC_Os02g01110.1	"translation initiation factor IF-3, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.135680.1.S1_at	A	A1TS	POPTR_0001s17520	POPTR_0001s17520 (11)	scaffold_1:14308593-14308640(+) (11)	NA	O24381	Plastidic ATP/ADP-transporter	AT1G80300.1	nucleotide transporter 1 	LOC_Os02g11740.1	"plastidic ATP/ADP-transporter, putative, expressed"	Medtr2g123610.1	ADP/ATP carrier protein 	GO:0006810|transport	GO:0005524|ATP binding||GO:0005471|ATP:ADP antiporter activity	GO:0016021|integral to membrane
PtpAffx.135680.1.S1_s_at	A	A2TS	POPTR_0003s05760	POPTR_0003s05760 (11)//POPTR_0001s17520 (10)	scaffold_1:14308342-14308740(+) (10)//scaffold_3:7134528-7135083(-) (11)	NA	O24381	Plastidic ATP/ADP-transporter	AT1G80300.1	nucleotide transporter 1 	LOC_Os02g11740.1	"plastidic ATP/ADP-transporter, putative, expressed"	Medtr2g123610.1	ADP/ATP carrier protein 	GO:0006810|transport	GO:0005524|ATP binding||GO:0005471|ATP:ADP antiporter activity	GO:0016021|integral to membrane
PtpAffx.135681.1.S1_s_at	A	A1TS	POPTR_0011s13610	POPTR_0011s13610 (11)	scaffold_11:16316401-16317356(-) (11)	NA	Q9H6U6	Breast carcinoma-amplified sequence 3	AT5G54730.1	homolog of yeast autophagy 18 (ATG18) F 	LOC_Os01g57720.2	expressed protein	Medtr2g096860.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135684.1.S1_at	A	A1TS	POPTR_0010s12550	POPTR_0010s12550 (10)	scaffold_10:12557451-12557884(+) (10)	NA	O14197	Uncharacterized transporter C5D6.04	AT1G71090.1	Auxin efflux carrier family protein 	LOC_Os08g09190.1	"auxin efflux carrier component, putative, expressed"	Medtr5g068420.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.135693.1.S1_s_at	A	A1TS	POPTR_0015s12490	POPTR_0015s12490 (11)	scaffold_15:12718702-12718830(-) (11)	NA	Q6PGS5	Transmembrane protein 56-B	AT1G31300.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os03g46410.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.1357.1.S1_at	A	A1TS	POPTR_0009s09170	POPTR_0009s09170 (11)	scaffold_9:8195991-8196555(+) (11)	NA	NA	NA	AT3G19650.1	cyclin-related 	LOC_Os03g10590.1	"splicing factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135709.1.S1_s_at	A	A1TS	POPTR_0010s08390	POPTR_0010s08390 (11)	scaffold_10:9324042-9324225(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.13574.1.S1_at	A	A1TS	POPTR_0019s05620	POPTR_0019s05620 (11)	scaffold_19:5987638-5989080(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT1G58030.1	cationic amino acid transporter 2 	LOC_Os12g42850.1	"amino acid permease, putative, expressed"	Medtr7g103380.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.135757.1.S1_at	A	A1TS	POPTR_0008s19180	POPTR_0008s19180 (11)	scaffold_8:13144121-13144900(+) (11)	NA	Q9BXS5	AP-1 complex subunit mu-1	AT1G60780.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os01g50770.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g034870.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.135763.1.S1_s_at	A	A1TS	POPTR_0010s19240	POPTR_0010s19240 (11)	scaffold_10:17214117-17214820(+) (11)	NA	Q9SIZ3	Probable methyltransferase PMT23	AT2G40280.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g61250.1	"methyltransferase, putative, expressed"	Medtr5g090650.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.135781.1.S1_s_at	A	A1TS	POPTR_0015s10890	POPTR_0015s10890 (11)	scaffold_15:11656491-11656842(-) (11)	NA	NA	NA	AT4G24910.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g103910.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135786.1.S1_s_at	A	A1TS	POPTR_0018s09020	POPTR_0018s09020 (11)	scaffold_18:9896746-9896963(-) (11)	NA	O82480	Rac-like GTP-binding protein ARAC7	AT4G28950.1	RHO-related protein from plants 9 	LOC_Os05g43820.3	"ras-related protein, putative, expressed"	Medtr6g099230.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.135805.1.A1_at	A	A1TS	POPTR_0015s06580	POPTR_0015s06580 (11)	scaffold_15:7524788-7526188(+) (11)	NA	NA	NA	AT1G26190.1	Phosphoribulokinase / Uridine kinase family 	LOC_Os02g47860.2	"uridine kinase, putative, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135849.1.S1_at	A	A1TS	POPTR_0009s05770	POPTR_0009s05770 (9)	scaffold_9:5785682-5786112(-) (9)	NA	NA	NA	AT3G20898.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g080740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135854.1.S1_at	A	A1TS	POPTR_0006s05180	POPTR_0006s05180 (11)	scaffold_6:3625514-3626007(-) (11)	NA	P93788	Remorin	AT3G57540.1	Remorin family protein 	LOC_Os07g38170.1	"remorin, putative, expressed"	Medtr7g110620.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135854.2.S1_at	A	A1TS	POPTR_0016s05470	POPTR_0016s05470 (9)	scaffold_16:3397121-3398187(+) (9)	NA	P93788	Remorin	AT2G41870.1	Remorin family protein 	LOC_Os07g38170.1	"remorin, putative, expressed"	Medtr7g110620.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135867.1.A1_at	A	A1TS	POPTR_0001s16120	POPTR_0001s16120 (10)	scaffold_1:12945514-12946120(+) (10)	NA	Q9UUH0	Uncharacterized protein C630.12	AT1G53710.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os03g27950.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g027100.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.135878.1.A1_s_at	A	A1TS	POPTR_0001s37570	POPTR_0001s37570 (11)	scaffold_1:36547383-36548252(+) (11)	NA	P87131	Cysteine synthase 2	AT1G55880.1	Pyridoxal-5'-phosphate-dependent enzyme family protein 	LOC_Os03g11660.1	"cysteine synthase, putative, expressed"	Medtr5g103260.1	Cystathionine beta-synthase 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.135882.1.A1_at	A	A1TS	POPTR_0001s38730	POPTR_0001s38730 (10)	scaffold_1:37896288-37896798(-) (10)	NA	Q759M1	Protein SIP5	AT1G78420.2	RING/U-box superfamily protein 	LOC_Os02g14720.1	expressed protein	Medtr7g031940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135933.1.S1_at	A	A1TS	POPTR_0019s02230	POPTR_0019s02230 (10)	scaffold_19:2078410-2079014(-) (10)	NA	NA	NA	AT3G04590.2	AT hook motif DNA-binding family protein 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr1g093350.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135947.2.A1_s_at	A	A1MS	POPTR_0018s08280	POPTR_0018s08280 (11)	scaffold_18:9180499-9180727(-) (11)	NA	NA	NA	AT5G20885.1	RING/U-box superfamily protein 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135961.1.A1_at	A	A1TS	POPTR_0015s05430	POPTR_0015s05430 (11)	scaffold_15:5786999-5787370(+) (11)	NA	P92973	Protein CCA1	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135961.2.A1_at	A	A1TS	POPTR_0015s05430	POPTR_0015s05430 (11)	scaffold_15:5786845-5786955(+) (11)	NA	P92973	Protein CCA1	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135961.2.A1_s_at	A	A1TS	POPTR_0015s05430	POPTR_0015s05430 (11)	scaffold_15:5786672-5786829(+) (11)	NA	P92973	Protein CCA1	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136012.1.A1_at	A	A1TS	POPTR_0010s19240	POPTR_0010s19240 (11)	scaffold_10:17216286-17216659(+) (11)	NA	Q9SIZ3	Probable methyltransferase PMT23	AT2G40280.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g61250.1	"methyltransferase, putative, expressed"	Medtr5g090650.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.136012.1.A1_s_at	A	A1TS	POPTR_0010s19240	POPTR_0010s19240 (11)	scaffold_10:17215899-17216266(+) (11)	NA	Q9SIZ3	Probable methyltransferase PMT23	AT2G40280.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g61250.1	"methyltransferase, putative, expressed"	Medtr5g090650.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.136052.1.A1_at	A	A1TS	POPTR_0001s19200	POPTR_0001s19200 (10)	scaffold_1:16666662-16670135(-) (10)	NA	P37572	DNA repair protein radA homolog	AT5G50340.1	ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases 	LOC_Os06g05820.1	"OsLonP2 - Putative Lon protease homologue, expressed"	Medtr2g121930.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136061.1.A1_at	A	A1TS	POPTR_0006s17810	POPTR_0006s17810 (11)	scaffold_6:15994853-15995348(+) (11)	NA	Q0JLP9	Probable protein phosphatase 2C 6	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr4g159800.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136075.1.A1_at	A	A1TS	POPTR_0002s02920	POPTR_0002s02920 (10)	scaffold_2:1796332-1796860(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136077.1.A1_s_at	A	A1TS	POPTR_0013s06770	POPTR_0013s06770 (11)	scaffold_13:5479571-5479986(-) (11)	POPTR_0019s06100 (8)	P26683	RNA polymerase sigma factor rpoD	AT1G08540.1	RNApolymerase sigma subunit 2 	LOC_Os11g26160.1	"RNA polymerase sigma factor, putative, expressed"	Medtr3g163870.1	"Winged helix repressor DNA-binding; RNA polymerase sigma factor RpoS, proteobacteria; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.136078.1.A1_at	A	A1TS	POPTR_0016s11410	POPTR_0016s11410 (9)	scaffold_16:10266037-10266762(+) (9)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13609.1.S1_at	A	A1TS	POPTR_0011s09340	POPTR_0011s09340 (11)	scaffold_11:11585540-11585992(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.136142.1.S1_at	A	A1TS	POPTR_0014s03860	POPTR_0014s03860 (11)	scaffold_14:3080189-3081470(-) (11)	NA	Q9SX85	Exocyst complex component SEC3A	AT1G47550.1	exocyst complex component sec3A 	LOC_Os03g42750.1	"roothairless 1, putative, expressed"	Medtr1g025760.1	"Strong similarity to F16N3.18 from, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136157.1.S1_at	A	A1TS	POPTR_0001s35930	POPTR_0001s35930 (11)	scaffold_1:34386788-34389163(-) (11)	NA	Q5KGJ3	Mitochondrial inner membrane protease ATP23	AT3G03420.1	Ku70-binding family protein 	LOC_Os12g19090.1	"metalloprotease ATP23, putative, expressed"	Medtr8g025200.1	"Mitochondrial inner membrane protease atp23, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136158.1.S1_at	A	A1TS	POPTR_0005s06640	POPTR_0005s06640 (9)	scaffold_5:4447879-4449196(+) (11)	NA	Q8L7V3	Probable methyltransferase PMT26	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.136160.1.A1_a_at	A	A1TS	POPTR_0007s02610	POPTR_0007s02610 (11)	scaffold_7:1533086-1533542(-) (11)	NA	Q58760	Uncharacterized protein MJ1365	AT1G05270.1	TraB family protein 	LOC_Os05g42010.1	"TraB family protein, putative, expressed"	Medtr6g059350.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136174.1.S1_at	A	A1TS	POPTR_0008s00670	POPTR_0008s00670 (11)	scaffold_8:309843-309991(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136179.1.A1_at	A	A1TS	POPTR_0005s24810	POPTR_0005s24810 (11)	scaffold_5:23245419-23246240(+) (11)	NA	Q681Q7	Uncharacterized protein At1g03900	AT1G03900.1	non-intrinsic ABC protein 4 	LOC_Os10g33630.2	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
PtpAffx.136213.1.S1_s_at	A	A1TS	POPTR_0010s21500	POPTR_0010s21500 (11)	scaffold_10:18755124-18755741(+) (11)	NA	NA	NA	AT3G12590.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g74310.1	expressed protein	Medtr7g025550.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13627.3.A1_a_at	A	A1TS	POPTR_0006s04380	POPTR_0006s04380 (9)	scaffold_6:2974414-2975588(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136305.1.S1_at	A	A1TS	POPTR_0004s03680	POPTR_0004s03680 (10)	scaffold_4:2549991-2550801(-) (10)	NA	Q9M5P2	Secretory carrier-associated membrane protein 3	AT1G61250.1	secretory carrier 3 	LOC_Os01g57220.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
PtpAffx.136323.1.S1_at	A	A1TS	POPTR_0014s03980	POPTR_0014s03980 (11)	scaffold_14:3165630-3165908(-) (11)	NA	Q9LN68	Probable galacturonosyltransferase-like 1	AT1G19300.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.136350.1.S1_at	A	A1TS	POPTR_0007s01340	POPTR_0007s01340 (11)	scaffold_7:750782-751208(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT1G28440.1	HAESA-like 1 	LOC_Os01g13800.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr2g018130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.136353.1.S1_s_at	A	A1TS	POPTR_0002s15590	POPTR_0002s15590 (11)	scaffold_2:11632169-11632440(+) (11)	NA	P45432	COP9 signalosome complex subunit 1	AT3G61140.1	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os03g02540.1	"proteasome subunit, putative, expressed"	Medtr7g083770.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136353.2.S1_s_at	A	A1TS	POPTR_0014s07160	POPTR_0014s07160 (11)	scaffold_14:5417370-5418459(-) (11)	NA	P45432	COP9 signalosome complex subunit 1	AT3G61140.1	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os03g02540.1	"proteasome subunit, putative, expressed"	Medtr7g083770.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136359.1.A1_at	A	A2TS	POPTR_0004s05350	POPTR_0004s05350 (11)//POPTR_0686s00200 (9)	scaffold_4:4086247-4087079(+) (11)//scaffold_686:416-937(+) (9)	NA	Q8RXT9	GDSL esterase/lipase At1g28590	AT1G28590.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g11710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019010.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.136361.1.S1_s_at	A	A1TS	POPTR_0004s24510	POPTR_0004s24510 (11)	scaffold_4:23184273-23185159(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT4G19185.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os02g47500.1	"nodulin, putative, expressed"	Medtr8g086840.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.136364.1.A1_s_at	A	A1TS	POPTR_0014s15270	POPTR_0014s15270 (11)	scaffold_14:11338110-11339325(+) (11)	NA	P79051	ATP-dependent helicase rhp16	AT1G05120.1	Helicase protein with RING/U-box domain 	LOC_Os07g32730.1	"DNA repair protein rhp16, putative, expressed"	Medtr4g064720.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.136368.1.S1_at	A	A1TS	POPTR_0004s23180	POPTR_0004s23180 (11)	scaffold_4:21960055-21960214(-) (11)	NA	Q40863	Embryogenesis-associated protein EMB8	AT5G49950.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g35730.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g122270.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136368.1.S1_s_at	A	A1TS	POPTR_0004s23180	POPTR_0004s23180 (9)	scaffold_4:21960225-21960421(-) (11)	NA	Q40863	Embryogenesis-associated protein EMB8	AT5G49950.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g35730.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g122270.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13638.1.S1_a_at	A	A2TS	POPTR_0008s16560	POPTR_0010s08360 (11)//POPTR_0008s16560 (11)	scaffold_10:9304799-9305563(+) (11)//scaffold_8:11116777-11117801(-) (11)	NA	Q8L467	Transcription factor bHLH104	AT4G14410.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02480.3	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr1g042530.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.13638.1.S1_at	A	A1TS	POPTR_0010s08360	POPTR_0010s08360 (11)	scaffold_10:9305341-9305725(+) (11)	NA	Q8L467	Transcription factor bHLH104	AT4G14410.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02480.3	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr1g042530.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.13638.2.S1_at	A	A1TS	POPTR_0008s16560	POPTR_0008s16560 (11)	scaffold_8:11116534-11117815(-) (11)	NA	Q8L467	Transcription factor bHLH104	AT4G14410.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02480.3	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr1g042530.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.136381.1.S1_at	A	A1TS	POPTR_0002s16340	POPTR_0002s16340 (9)	scaffold_2:12220646-12221104(-) (9)	NA	Q9SUS5	E3 ubiquitin-protein ligase RHA1B	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136381.2.S1_s_at	A	A1TS	POPTR_0014s08360	POPTR_0014s08360 (10)	scaffold_14:6219605-6219808(-) (10)	NA	Q9SUS5	E3 ubiquitin-protein ligase RHA1B	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1364.1.A1_a_at	A	A1TS	POPTR_0007s01010	POPTR_0007s01010 (11)	scaffold_7:548257-548378(-) (11)	NA	P31691	"ADP,ATP carrier protein, mitochondrial"	AT4G28390.1	ADP/ATP carrier 3 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1364.3.A1_at	A	A1TS	POPTR_0007s01010	POPTR_0007s01010 (11)	scaffold_7:547330-547785(-) (11)	NA	P31691	"ADP,ATP carrier protein, mitochondrial"	AT4G28390.1	ADP/ATP carrier 3 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1364.4.S1_s_at	A	A1TS	POPTR_0007s01010	POPTR_0007s01010 (9)	scaffold_7:549435-549756(-) (9)	POPTR_0017s04450 (8)	P31691	"ADP,ATP carrier protein, mitochondrial"	AT4G28390.1	ADP/ATP carrier 3 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13640.1.A1_at	A	A1TS	POPTR_0006s12520	POPTR_0006s12520 (9)	scaffold_6:9660771-9661967(-) (9)	NA	NA	NA	AT5G03420.1	5'-AMP-activated protein kinase-related 	LOC_Os03g48170.1	"5-AMP-activated protein kinase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136402.1.S1_at	A	A1TS	POPTR_0010s10750	POPTR_0010s10750 (11)	scaffold_10:11186733-11188923(-) (11)	NA	NA	NA	AT3G02820.1	zinc knuckle (CCHC-type) family protein 	LOC_Os02g52460.1	"zinc knuckle domain containing protein, expressed"	Medtr4g100980.1	"Zinc finger, CCHC-type; Replication fork protection component Swi3 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0007049|cell cycle||GO:0048478|replication fork protection||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.13641.2.A1_a_at	A	A1TS	POPTR_0003s01080	POPTR_0003s01080 (11)	scaffold_3:948235-949037(-) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT4G20020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast hits to 16023 proteins in 1033 species: Archae - 4; Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants - 3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI BLink). 	LOC_Os11g11020.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g006280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136410.1.S1_at	A	A1TS	POPTR_0010s19690	POPTR_0010s19690 (9)	scaffold_10:17534814-17536641(+) (9)	NA	NA	NA	AT2G40095.1	Alpha/beta hydrolase related protein 	LOC_Os01g45960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g093490.1	"hydrolase, alpha/beta fold family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136423.1.S1_s_at	A	A1TS	POPTR_0004s06640	POPTR_0004s06640 (11)	scaffold_4:5325437-5325718(-) (11)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr3g137660.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.136492.1.S1_s_at	A	A1TS	POPTR_0015s14080	POPTR_0015s14080 (11)	scaffold_15:13816399-13816510(-) (11)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT4G25390.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	Medtr8g150930.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.136498.1.S1_at	A	A1TS	POPTR_0001s18400	POPTR_0001s18400 (10)	scaffold_1:15467462-15468091(-) (10)	NA	Q66GQ3	Protein disulfide isomerase-like 1-6	AT3G16110.1	PDI-like 1-6 	LOC_Os06g06790.1	"OsPDIL1-5  protein disulfide isomerase PDIL1-5, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.136506.1.S1_at	A	A1TS	POPTR_0005s09860	POPTR_0005s09860 (10)	scaffold_5:6940319-6940763(-) (10)	NA	O04866	"Acetylornithine aminotransferase, mitochondrial"	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.13651.1.A1_s_at	A	A1TS	POPTR_0002s13630	POPTR_0002s13630 (11)	scaffold_2:10097587-10097902(-) (11)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.136512.1.S1_at	A	A1TS	POPTR_0001s03320	POPTR_0001s03320 (10)	scaffold_1:2705119-2705598(-) (10)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G79720.1	Eukaryotic aspartyl protease family protein 	LOC_Os09g25570.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13652.1.S1_s_at	A	A1TS	POPTR_0015s14430	POPTR_0015s14430 (11)	scaffold_15:14039395-14039780(+) (11)	NA	Q9FHM7	Hypersensitive-induced response protein 4	AT5G51570.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os06g04460.1	"hypersensitive-induced response protein, putative, expressed"	Medtr6g069910.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13664.1.A1_at	A	A1TS	POPTR_0008s16750	POPTR_0008s16750 (11)	scaffold_8:11263140-11263658(+) (11)	POPTR_0010s08140 (7)	NA	NA	AT2G31160.1	Protein of unknown function (DUF640) 	LOC_Os02g07030.3	"DUF640 domain containing protein, putative, expressed"	Medtr1g043150.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13666.1.S1_at	A	A1TS	POPTR_0010s15230	POPTR_0010s15230 (11)	scaffold_10:14565839-14566393(+) (11)	NA	NA	NA	AT5G49400.1	zinc knuckle (CCHC-type) family protein 	LOC_Os11g09310.1	"zinc finger CCHC domain-containing protein 10, putative, expressed"	Medtr8g137800.1	"Zinc finger CCHC domain-containing protein 10, related "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.136671.1.A1_s_at	A	A1TS	POPTR_0013s02250	POPTR_0013s02250 (9)	scaffold_13:1341704-1344633(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g139200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1367.1.A1_at	A	A1MA	POPTR_0006s18770	POPTR_0006s18770 (11)	scaffold_6:17402976-17403373(+) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G57670.2	Protein kinase superfamily protein 	LOC_Os08g15060.1	"ATP binding protein, putative, expressed"	Medtr8g128150.1	Tyrosine protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13670.1.S1_at	A	A1TS	POPTR_0018s08800	POPTR_0018s08800 (11)	scaffold_18:9727315-9727764(+) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT3G24550.1	proline extensin-like receptor kinase 1 	LOC_Os05g12680.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g093550.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13671.1.S1_at	A	A1TS	POPTR_0007s06480	POPTR_0007s06480 (9)	scaffold_7:4850964-4851505(+) (11)	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os08g07740.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr4g140740.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.136723.1.S1_at	A	A1TS	POPTR_0004s01220	POPTR_0004s01220 (11)	scaffold_4:668770-668822(-) (11)	NA	P92980	"5'-adenylylsulfate reductase 3, chloroplastic"	AT4G21990.1	APS reductase 3 	LOC_Os07g32570.2	"OsAPRL1  adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed"	Medtr3g017000.1	hypothetical protein 	GO:0008152|metabolic process	GO:0016740|transferase activity	NA
PtpAffx.136723.1.S1_s_at	A	A1TS	POPTR_0004s01220	POPTR_0004s01220 (11)	scaffold_4:668324-668778(-) (11)	POPTR_0004s01190 (6)	P92980	"5'-adenylylsulfate reductase 3, chloroplastic"	AT4G21990.1	APS reductase 3 	LOC_Os07g32570.2	"OsAPRL1  adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed"	Medtr3g017000.1	hypothetical protein 	GO:0008152|metabolic process	GO:0016740|transferase activity	NA
PtpAffx.136738.1.S1_s_at	A	A1TS	POPTR_0002s08900	POPTR_0002s08900 (11)	scaffold_2:6285545-6285608(-) (11)	NA	P42732	"30S ribosomal protein S13, chloroplastic"	AT5G14320.1	Ribosomal protein S13/S18 family 	LOC_Os03g49710.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr3g098290.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.13675.1.A1_at	A	A1TS	POPTR_0006s27150	POPTR_0006s27150 (9)	scaffold_6:25151204-25151473(+) (9)	NA	Q15B89	UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (Fragment)	AT4G32272.1	Nucleotide/sugar transporter family protein 	LOC_Os02g40030.1	"transporter family protein, putative, expressed"	Medtr1g014080.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.136766.1.S1_at	A	A1MS	POPTR_0016s04710	POPTR_0016s04710 (9)	scaffold_16:2711050-2712019(-) (9)//scaffold_16:2810202-2811182(-) (10)	POPTR_0016s04610 (6)	Q6BDR8	Non-structural maintenance of chromosome element 4	AT1G51130.1	"Nse4, component of Smc5/6 DNA repair complex "	LOC_Os02g10090.1	expressed protein	Medtr1g147250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136792.1.S1_at	A	A1TS	POPTR_0002s03730	POPTR_0002s03730 (11)	scaffold_2:2315218-2315568(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G28540.1	casein kinase I-like 6 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1368.1.A1_at	A	A1TS	POPTR_0008s18050	POPTR_0008s18050 (11)	scaffold_8:12104202-12104605(+) (11)	NA	Q8RW96	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	AT3G26020.3	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os07g17360.2	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13681.1.S1_s_at	A	A1TS	POPTR_0014s16750	POPTR_0014s16750 (11)	scaffold_14:12832877-12833928(-) (11)	NA	Q9SJD4	Long chain acyl-CoA synthetase 8	AT2G04350.2	AMP-dependent synthetase and ligase family protein 	LOC_Os05g25310.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g106650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.136820.1.S1_a_at	A	A2TS	POPTR_0008s12780	POPTR_0008s12780 (11)//POPTR_0010s12390 (11)	scaffold_10:12429976-12430190(+) (11)//scaffold_8:8253621-8253835(-) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT1G71010.1	FORMS APLOID AND BINUCLEATE CELLS 1C 	LOC_Os08g33200.1	"1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.136820.2.S1_at	A	A1TS	POPTR_0010s12390	POPTR_0010s12390 (11)	scaffold_10:12430014-12430459(+) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT1G71010.1	FORMS APLOID AND BINUCLEATE CELLS 1C 	LOC_Os06g14750.1	"phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.13683.2.A1_a_at	A	A1TS	POPTR_0012s09360	POPTR_0012s09360 (11)	scaffold_12:10407749-10408064(+) (11)	NA	Q9M8Y0	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC	AT5G63200.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g67920.1	"tetratricopeptide repeat domain containing protein, expressed"	AC235753_16.1	Tetratricopeptide-like helical; AC235753.1 94332-88707 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136832.1.S1_at	A	A1TS	POPTR_0005s01720	POPTR_0005s01720 (9)	scaffold_5:1148249-1148831(+) (9)	NA	Q9FP29	Homeobox protein knotted-1-like 1	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os01g19694.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.13687.1.S1_at	A	A1TS	POPTR_0010s19720	POPTR_0010s19720 (11)	scaffold_10:17559816-17560975(-) (11)	NA	O49595	High mobility group B protein 1	AT3G51880.2	high mobility group B1 	LOC_Os09g37910.3	"HMG1/2, putative, expressed"	Medtr3g025490.1	HMG1/2 (high mobility group) box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.13687.2.S1_a_at	A	A1TS	POPTR_0008s06730	POPTR_0008s06730 (11)	scaffold_8:4022818-4024031(+) (11)	NA	O49595	High mobility group B protein 1	AT3G51880.2	high mobility group B1 	LOC_Os09g37910.3	"HMG1/2, putative, expressed"	Medtr3g025490.1	HMG1/2 (high mobility group) box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.13688.2.S1_a_at	A	A1TS	POPTR_0008s17670	POPTR_0008s17670 (11)	scaffold_8:11870081-11870517(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13691.1.A1_at	A	A1TS	POPTR_0011s17010	POPTR_0011s17010 (10)	scaffold_11:18679667-18680110(+) (10)	NA	Q9FF99	Probable amino acid permease 7	AT5G23810.1	amino acid permease 7 	LOC_Os04g39489.1	"amino acid transporter, putative, expressed"	CU013523_1.1	"Amino acid transporter, transmembrane CU013523.3 15682-12598 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136912.1.S1_s_at	A	A1TS	POPTR_0004s14080	POPTR_0004s14080 (11)	scaffold_4:14569490-14570715(-) (11)	NA	Q38772	Cell division control protein 2 homolog A	AT3G48750.1	cell division control 2 	LOC_Os03g02680.2	"cyclin-dependent kinase A-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13692.1.A1_at	A	A1TS	POPTR_0001s26170	POPTR_0001s26170 (11)	scaffold_1:25235499-25235606(-) (11)	NA	Q99J36	THUMP domain-containing protein 1	AT5G12410.1	THUMP domain-containing protein 	LOC_Os11g36060.1	"THUMP domain-containing protein, putative, expressed"	Medtr5g009030.1	THUMP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136933.1.S1_s_at	A	A1TS	POPTR_0003s13810	POPTR_0003s13810 (11)	scaffold_3:14084219-14085252(+) (11)	NA	A7YY75	Nucleoporin SEH1	AT1G64350.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g43250.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g076630.1	"seh1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13694.1.S1_at	A	A1TS	POPTR_0013s02160	POPTR_0013s02160 (11)	scaffold_13:1299514-1300498(+) (11)	NA	NA	NA	AT5G27560.1	Domain of unknown function (DUF1995) 	LOC_Os06g05390.1	expressed protein	Medtr1g099510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136947.1.S1_at	A	A1MS	POPTR_0011s12010	POPTR_0011s12010 (10)	scaffold_11:14792099-14792645(+) (10)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.2	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13695.1.S1_at	A	A1TS	POPTR_0001s18780	POPTR_0001s18780 (11)	scaffold_1:15916948-15918457(-) (11)	NA	Q5KAH3	Cytochrome c oxidase assembly protein COX19	AT1G66590.1	cytochrome c oxidase 19-1 	LOC_Os02g20940.2	"CHCH domain containing protein, expressed"	Medtr8g015260.1	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136953.1.S1_s_at	A	A1TS	POPTR_0002s02490	POPTR_0002s02490 (11)	scaffold_2:1405832-1407254(+) (11)	NA	Q54UB1	tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6	AT2G45730.1	eukaryotic initiation factor 3 gamma subunit family protein 	LOC_Os04g02150.2	"tRNA methyltransferase, putative, expressed"	Medtr1g030970.1	"Eukaryotic initiation factor 3, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.136954.1.S1_at	A	A1TS	POPTR_0007s01590	POPTR_0007s01590 (11)	scaffold_7:901361-903762(+) (11)	NA	NA	NA	AT3G07565.1	Protein of unknown function (DUF3755) 	LOC_Os05g24000.2	expressed protein	Medtr3g025420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136959.1.S1_at	A	A2TS	POPTR_0010s06380	POPTR_0010s06380 (11)//POPTR_0010s06390 (11)	scaffold_10:7748584-7748633(+) (11)//scaffold_10:7781038-7781087(+) (11)	NA	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g70025.1	"transferase family protein, putative"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.136959.1.S1_s_at	A	A2TS	POPTR_0010s06380	POPTR_0010s06380 (11)//POPTR_0010s06390 (11)	scaffold_10:7748670-7748850(+) (11)//scaffold_10:7781124-7781304(+) (11)	NA	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g70025.1	"transferase family protein, putative"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.13697.1.S1_a_at	A	A2TS	POPTR_0014s12800	POPTR_0014s12800 (11)//POPTR_0020s00510 (11)	scaffold_14:9436858-9437176(+) (11)//scaffold_20:783324-783642(-) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT1G03010.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g22600.1	"BTBN6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr7g130000.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.13697.1.S1_at	A	A1TS	POPTR_0014s12800	POPTR_0014s12800 (11)	scaffold_14:9437065-9437295(+) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT1G03010.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g22600.1	"BTBN6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr7g130000.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.136973.1.S1_at	A	A1TS	POPTR_0019s14760	POPTR_0019s14760 (11)	scaffold_19:15433903-15434776(+) (11)	NA	NA	NA	AT1G06950.1	translocon at the inner envelope membrane of chloroplasts 110 	LOC_Os10g35010.1	"ATTIC110/TIC110, putative, expressed"	Medtr5g082650.1	"chloroplast inner envelope protein, 110 kD, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136977.2.S1_s_at	A	A2TS	POPTR_0006s16090	POPTR_0130s00220 (11)//POPTR_0006s16090 (11)	scaffold_130:40602-41409(+) (11)//scaffold_6:13978179-13978823(-) (11)	NA	Q9LK09	Syntaxin-32	AT3G24350.1	syntaxin of plants  32 	LOC_Os01g08400.1	"syntaxin, putative, expressed"	Medtr3g136000.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.136990.1.S1_at	A	A1TS	POPTR_0003s04320	POPTR_0003s04320 (10)	scaffold_3:5031525-5032795(-) (10)	NA	Q5HWH7	5'-nucleotidase surE	AT1G72880.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os01g51280.1	"5-nucleotidase surE, putative, expressed"	Medtr2g120880.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.136997.1.S1_s_at	A	A1TS	POPTR_0009s01890	POPTR_0009s01890 (11)	scaffold_9:2364627-2365936(+) (11)	NA	NA	NA	AT5G60580.3	RING/U-box superfamily protein 	LOC_Os06g46366.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr4g081620.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136998.1.S1_at	A	A1TS	POPTR_0007s14790	POPTR_0007s14790 (11)	scaffold_7:14530905-14531305(-) (11)	NA	NA	NA	AT3G49800.1	BSD domain-containing protein 	LOC_Os01g56100.1	"BSD domain containing protein, expressed"	Medtr5g015300.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1370.1.A1_s_at	A	A1TS	POPTR_0015s07550	POPTR_0015s07550 (11)	scaffold_15:8839706-8840013(+) (11)	NA	Q40255	Probable aldehyde dehydrogenase	AT5G62530.1	aldehyde dehydrogenase 12A1 	LOC_Os05g45960.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g112760.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137019.1.S1_s_at	A	A1TS	POPTR_0004s19350	POPTR_0004s19350 (11)	scaffold_4:19208301-19208749(-) (11)	NA	NA	NA	AT4G35240.2	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37520.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13702.1.S1_at	A	A1TS	POPTR_0004s07130	POPTR_0004s07130 (11)	scaffold_4:5901773-5902260(+) (11)	NA	NA	NA	AT5G52780.1	Protein of unknown function (DUF3464) 	LOC_Os10g38910.1	expressed protein	Medtr6g062120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137025.1.S1_at	A	A1TS	POPTR_0011s11100	POPTR_0011s11100 (11)	scaffold_11:13766891-13767260(+) (11)	NA	P81898	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	AT3G14920.1	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein 	LOC_Os01g10930.1	"peptide-N4-asparagine amidase A, putative, expressed"	Medtr1g028750.1	"Peptide-N4-asparagine amidase A, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13703.1.S1_s_at	A	A1TS	POPTR_0011s10590	POPTR_0011s10590 (11)	scaffold_11:13124374-13124627(+) (11)	NA	Q500Y9	NADH kinase	AT1G78590.1	NAD(H) kinase 3 	LOC_Os09g17680.1	"NAD kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137030.1.S1_s_at	A	A1TS	POPTR_0012s07080	POPTR_0012s07080 (11)	scaffold_12:7765788-7766406(+) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.137054.1.S1_at	A	A1TS	POPTR_0002s22430	POPTR_0002s22430 (11)	scaffold_2:19164083-19164119(+) (11)	NA	O22466	WD-40 repeat-containing protein MSI1	AT5G58230.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137054.1.S1_s_at	A	A1TS	POPTR_0002s22430	POPTR_0002s22430 (11)	scaffold_2:19164192-19165050(+) (11)	NA	O22466	WD-40 repeat-containing protein MSI1	AT5G58230.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137060.1.S1_at	A	A1TS	POPTR_0008s01930	POPTR_0008s01930 (11)	scaffold_8:920298-922361(-) (11)	NA	NA	NA	AT5G04840.1	bZIP protein 	LOC_Os02g33560.1	expressed protein	Medtr2g132450.1	Basic leucine zipper 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1371.1.A1_at	A	A1TS	POPTR_0006s10930	POPTR_0006s10930 (10)	scaffold_6:8291924-8292196(-) (10)	NA	P93026	Vacuolar-sorting receptor 1	AT3G52850.1	vacuolar sorting receptor homolog 1 	LOC_Os11g02464.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr8g005600.1	"EGF-like calcium-binding; Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13710.1.S1_at	A	A1TS	POPTR_0022s00840	POPTR_0022s00840 (10)	scaffold_22:442182-442372(+) (10)	NA	Q9C5E7	"Pumilio homolog 6, chloroplastic"	AT4G25880.1	pumilio 6 	LOC_Os08g40830.2	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.137119.1.S1_at	A	A1TS	POPTR_0007s01020	POPTR_0007s01020 (11)	scaffold_7:551590-552359(-) (11)	NA	P41695	Checkpoint serine/threonine-protein kinase BUB1	AT2G20635.1	ATP binding;protein kinases;protein serine/threonine kinases 	LOC_Os07g32480.1	"mitotic checkpoint serine/threonine-protein kinase BUB1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137124.1.S1_s_at	A	A1TS	POPTR_0015s11530	POPTR_0015s11530 (11)	scaffold_15:12100012-12101500(-) (11)	NA	Q11204	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2"	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.137125.1.S1_at	A	A1TS	POPTR_0013s04790	POPTR_0013s04790 (11)	scaffold_13:3303747-3304362(+) (11)	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g022900.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.137131.1.S1_s_at	A	A1TS	POPTR_0006s04210	POPTR_0006s04210 (11)	scaffold_6:2878183-2879766(-) (11)	NA	Q84TJ0	Probable methyltransferase PMT6	AT3G10200.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g31480.2	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.137139.1.S1_at	A	A1TS	POPTR_0013s11770	POPTR_0013s11770 (11)	scaffold_13:12425401-12427095(-) (11)	NA	P46687	Gibberellin-regulated protein 3	AT2G18420.1	Gibberellin-regulated family protein 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr1g031010.1	Appr-1-p processing; Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137161.1.S1_at	A	A1TS	POPTR_0001s00330	POPTR_0001s00330 (11)	scaffold_1:198584-199437(-) (11)	NA	Q9C8U0	Flavin-containing monooxygenase FMO GS-OX-like 5	AT1G63370.1	Flavin-binding monooxygenase family protein 	LOC_Os10g40570.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr5g012290.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137171.1.S1_at	A	A1TS	POPTR_0018s08210	POPTR_0018s08210 (9)	scaffold_18:9052800-9055190(+) (9)	NA	NA	NA	AT1G15215.2	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g17770.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g070910.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137173.1.S1_s_at	A	A1TS	POPTR_0009s08120	POPTR_0009s08120 (11)	scaffold_9:7480773-7481712(+) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137176.1.S1_s_at	A	A1TS	POPTR_0018s00760	POPTR_0018s00760 (11)	scaffold_18:656435-657363(-) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.13718.1.S1_at	A	A1TS	POPTR_0014s02040	POPTR_0014s02040 (11)	scaffold_14:1788986-1790122(-) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G43100.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g40260.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr5g016240.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137186.1.S1_at	A	A1TS	POPTR_0001s18640	POPTR_0001s18640 (11)	scaffold_1:15695400-15697189(-) (11)	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr2g122680.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.137248.1.S1_at	A	A1TS	POPTR_0008s20440	POPTR_0008s20440 (11)	scaffold_8:14192970-14194681(-) (11)	NA	Q944H2	"Protein ABCI12, chloroplastic"	AT3G21580.1	cobalt ion transmembrane transporters 	LOC_Os05g33230.1	"cobalt ion transporter, putative, expressed"	Medtr2g026300.1	Cobalt transport protein 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006824|cobalt ion transport||GO:0044283|small molecule biosynthetic process	GO:0015087|cobalt ion transmembrane transporter activity	NA
PtpAffx.137256.1.S1_s_at	A	A1TS	POPTR_0006s26520	POPTR_0006s26520 (11)	scaffold_6:24720668-24723423(+) (11)	NA	Q8GY84	DEAD-box ATP-dependent RNA helicase 10	AT5G60990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g46610.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC146793_9.1	"Helicase, C-terminal; ; AC146793.7 47553-38999 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.137277.1.S1_s_at	A	A1TS	POPTR_0006s21980	POPTR_0006s21980 (11)	scaffold_6:20998152-20999735(+) (11)	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137280.1.S1_a_at	A	A1TS	POPTR_0003s04140	POPTR_0003s04140 (11)	scaffold_3:4804933-4806040(-) (11)	NA	Q8RWN9	"Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial"	AT3G13930.1	"Dihydrolipoamide acetyltransferase, long form protein "	LOC_Os06g01630.5	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.137280.2.S1_a_at	A	A1TS	POPTR_0003s04140	POPTR_0003s04140 (11)	scaffold_3:4805043-4806040(-) (11)	NA	Q8RWN9	"Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial"	AT3G13930.1	"Dihydrolipoamide acetyltransferase, long form protein "	LOC_Os06g01630.5	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.137281.1.S1_at	A	A1TS	POPTR_0005s12560	POPTR_0005s12560 (11)	scaffold_5:9339916-9340405(-) (11)	NA	NA	NA	AT2G18460.1	like COV 3 	LOC_Os05g45280.1	"protein of unknown function DUF502 domain containing protein, expressed"	Medtr4g158960.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13732.1.S1_s_at	A	A1TS	POPTR_0010s25090	POPTR_0010s25090 (11)	scaffold_10:20944606-20945468(-) (11)	NA	Q06850	Calcium-dependent protein kinase 1	AT5G04870.1	calcium dependent protein kinase 1 	LOC_Os03g57450.1	"CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.137321.1.S1_s_at	A	A1TS	POPTR_0001s05620	POPTR_0001s05620 (11)	scaffold_1:4338207-4341115(+) (11)	NA	Q940Q3	Zinc transporter ZTP29	AT3G20870.1	ZIP metal ion transporter family 	LOC_Os02g10230.1	"metal cation transporter, putative, expressed"	Medtr4g087400.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.13733.1.A1_at	A	A1TS	POPTR_0008s04800	POPTR_0008s04800 (9)	scaffold_8:2788707-2788955(+) (9)	NA	NA	NA	AT5G13560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). 	LOC_Os05g06980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137376.1.A1_at	A	A1MA	POPTR_0010s24730	POPTR_0010s24730 (11)	scaffold_10:20774093-20774544(-) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os11g05690.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.13738.2.S1_a_at	A	A1TS	POPTR_0007s11640	POPTR_0007s11640 (11)	scaffold_7:12025306-12027428(+) (11)	NA	O13978	Meiotically up-regulated gene 66 protein	AT5G66930.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 251 Blast hits to 251 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 85; Plants - 58; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). 	LOC_Os12g26044.3	expressed protein	Medtr6g086730.1	Protein of unknown function DUF1649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137388.1.S1_at	A	A2TS	POPTR_0009s13080	POPTR_0009s13080 (9)//POPTR_0009s13100 (9)	scaffold_9:10506623-10507159(-) (9)//scaffold_9:10522671-10523204(-) (9)	NA	Q7XSQ9	Probable aquaporin PIP1-2	AT2G16850.1	plasma membrane intrinsic protein 2;8 	LOC_Os04g47220.1	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.13741.1.A1_at	A	A1TS	POPTR_0002s24700	POPTR_0002s24700 (11)	scaffold_2:21985807-21986186(-) (11)	NA	Q42712	"Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment)"	AT3G25110.1	fatA acyl-ACP thioesterase 	LOC_Os09g32760.1	"acyl-ACP thioesterase, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13741.2.S1_s_at	A	A1TS	POPTR_0009s08330	POPTR_0009s08330 (11)	scaffold_9:7657294-7657682(+) (11)	NA	B5FZA8	LYR motif-containing protein 4	AT5G61220.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os08g14070.1	"LYR motif containing protein, putative, expressed"	Medtr7g012110.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137414.1.S1_s_at	A	A1TS	POPTR_0017s12960	POPTR_0017s12960 (11)	scaffold_17:13122690-13124157(-) (11)	NA	Q8L9Y0	Serine carboxypeptidase-like 25	AT3G02110.1	serine carboxypeptidase-like 25 	LOC_Os02g55130.4	"OsSCP10 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.137415.1.S1_at	A	A1TS	POPTR_0002s10250	POPTR_0002s10250 (10)	scaffold_2:7356120-7356756(-) (10)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G65380.1	MATE efflux family protein 	LOC_Os03g08900.1	"MATE efflux family protein, putative, expressed"	Medtr3g150100.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.137439.1.S1_s_at	A	A1TS	POPTR_0013s07530	POPTR_0013s07530 (11)	scaffold_13:6333433-6334257(+) (11)	NA	Q0WQG8	GPCR-type G protein 2	AT4G27630.2	GPCR-type G protein 2 	LOC_Os04g51180.1	"GPR89A, putative, expressed"	Medtr5g005620.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13744.1.S1_a_at	A	A2TS	POPTR_0001s47380	POPTR_0011s16970 (10)//POPTR_0001s47380 (10)	scaffold_1:47606502-47606868(+) (10)//scaffold_11:18663942-18664358(+) (10)	NA	Q39254	Vacuolar cation/proton exchanger 2	AT3G13320.1	cation exchanger 2 	LOC_Os03g27960.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g107060.1	Calcium/proton exchanger superfamily 	NA	NA	GO:0016021|integral to membrane
PtpAffx.13744.1.S1_at	A	A1TS	POPTR_0001s47380	POPTR_0001s47380 (9)	scaffold_1:47606472-47607252(+) (9)	NA	Q39254	Vacuolar cation/proton exchanger 2	AT3G13320.1	cation exchanger 2 	LOC_Os03g27960.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g107060.1	Calcium/proton exchanger superfamily 	NA	NA	GO:0016021|integral to membrane
PtpAffx.137445.1.S1_at	A	A1TS	POPTR_0014s09740	POPTR_0014s09740 (11)	scaffold_14:7264419-7264723(+) (11)	NA	Q42883	"Calcium-transporting ATPase, endoplasmic reticulum-type"	AT4G00900.1	ER-type Ca2+-ATPase 2 	LOC_Os03g17310.1	"calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed"	Medtr8g029470.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.137455.1.S1_s_at	A	A2TS	POPTR_0013s15480	POPTR_0019s15210 (11)//POPTR_0013s15480 (11)	scaffold_13:15435676-15435858(-) (11)//scaffold_19:15771309-15771491(-) (11)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g60330.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g083650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.137458.1.S1_at	A	A1TS	POPTR_0010s06670	POPTR_0010s06670 (11)	scaffold_10:7966108-7967334(+) (11)	NA	O32107	Uncharacterized membrane protein yuiD	AT1G67600.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os01g67560.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137461.1.S1_at	A	A1TS	POPTR_0013s03260	POPTR_0013s03260 (9)	scaffold_13:2000923-2001892(-) (9)	POPTR_0005s04710 (6)	Q9MAB3	Probable nucleolar protein 5-2	AT3G05060.1	NOP56-like pre RNA processing ribonucleoprotein 	LOC_Os03g22740.1	"nucleolar protein NOP5-1, putative"	Medtr5g010360.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOP5, N-terminal; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137472.1.S1_at	A	A1TS	POPTR_0006s05620	POPTR_0006s05620 (11)	scaffold_6:3972238-3972752(+) (11)	NA	NA	NA	AT3G57810.3	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr3g103530.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137476.1.S1_at	A	A1TS	POPTR_0007s00360	POPTR_0007s00360 (11)	scaffold_7:113286-114032(+) (11)	NA	NA	NA	AT2G31840.1	Thioredoxin superfamily protein 	LOC_Os05g34470.1	expressed protein	Medtr4g134500.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137477.1.S1_at	A	A1TS	POPTR_0005s16280	POPTR_0005s16280 (9)	scaffold_5:12994262-12997064(+) (9)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006333|chromatin assembly or disassembly||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0003682|chromatin binding||GO:0008270|zinc ion binding"	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.137477.2.S1_at	A	A1TS	POPTR_0002s09010	POPTR_0002s09010 (11)	scaffold_2:6377281-6379422(+) (11)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0008270|zinc ion binding"	GO:0005634|nucleus
PtpAffx.137481.1.S1_at	A	A1TS	POPTR_0006s23990	POPTR_0006s23990 (9)	scaffold_6:22701070-22701346(+) (9)	NA	O81488	PHD finger protein At5g26210	AT5G20510.1	alfin-like 5 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137481.2.S1_a_at	A	A2TS	POPTR_0006s23990	POPTR_0018s05470 (11)//POPTR_0006s23990 (11)	scaffold_18:5040297-5042757(-) (11)//scaffold_6:22697470-22699768(+) (11)	NA	O81488	PHD finger protein At5g26210	AT5G20510.1	alfin-like 5 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1375.2.S1_a_at	A	A1TS	POPTR_0002s19890	POPTR_0002s19890 (11)	scaffold_2:15829605-15830064(+) (11)	NA	Q6GPW4	Transmembrane protein 205	AT3G62580.1	Late embryogenesis abundant protein (LEA) family protein 	LOC_Os11g44940.1	"seed maturation protein PM27, putative, expressed"	Medtr1g107090.1	"Transmembrane protein 205, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137507.1.S1_at	A	A2TS	POPTR_0012s07090	POPTR_0015s07400 (11)//POPTR_0012s07090 (11)	scaffold_12:7775898-7778299(+) (11)//scaffold_15:8592980-8594893(+) (10)	NA	P53997	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.137524.1.S1_s_at	A	A1TS	POPTR_0007s00690	POPTR_0007s00690 (11)	scaffold_7:348241-349221(+) (11)	NA	Q39173	Probable NADP-dependent oxidoreductase P2	AT5G16990.1	Zinc-binding dehydrogenase family protein 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.137525.1.S1_s_at	A	A2TS	POPTR_0012s00940	POPTR_0012s00940 (11)//POPTR_0012s00960 (10)	scaffold_12:605364-605855(+) (11)//scaffold_12:626009-626500(+) (10)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137530.1.S1_at	A	A1TS	POPTR_0013s08200	POPTR_0013s08200 (11)	scaffold_13:7218114-7222743(+) (11)	NA	NA	NA	AT2G43945.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59870.1); Has 292 Blast hits to 292 proteins in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). 	LOC_Os01g23680.1	"rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137532.1.S1_at	A	A1TS	POPTR_0004s04220	POPTR_0004s04220 (10)	scaffold_4:3034249-3036534(+) (10)	POPTR_0011s05110 (6)	Q9ZPH2	Monothiol glutaredoxin-S17	AT4G04950.1	thioredoxin family protein 	LOC_Os10g35720.1	"OsGrx_S17 - glutaredoxin subgroup II, expressed"	AC233659_21.1	Glutaredoxin-related protein; Thioredoxin-like fold AC233659.1 95734-92338 F EGN_Mt090430 200	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.137540.1.S1_at	A	A1TS	POPTR_0006s27100	POPTR_0006s27100 (10)	scaffold_6:25112614-25114864(-) (10)	NA	Q55AX0	Dynamin-like protein C	AT3G19720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g07880.1	"dynamin family protein, putative, expressed"	AC235758_24.1	Dynamin central region; Dynamin; Dynamin GTPase effector AC235758.1 170271-163793 H EGN_Mt090430 200	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.137556.1.S1_at	A	A1TS	POPTR_0005s18400	POPTR_0005s18400 (11)	scaffold_5:16581232-16582023(+) (11)	NA	P47927	Floral homeotic protein APETALA 2	AT4G36920.2	Integrase-type DNA-binding superfamily protein 	LOC_Os04g55560.2	"AP2 domain containing protein, expressed"	Medtr5g016710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.137572.1.S1_at	A	A1TS	POPTR_0002s21790	POPTR_0002s21790 (11)	scaffold_2:18393343-18395311(+) (11)	NA	Q94AD9	Zinc finger CCCH domain-containing protein 3	AT1G04990.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g092550.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.137577.1.S1_s_at	A	A1TS	POPTR_0005s18040	POPTR_0005s18040 (11)	scaffold_5:16050536-16051752(-) (11)	NA	NA	NA	AT3G50620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr5g017700.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13760.1.S1_at	A	A1TS	POPTR_0002s02940	POPTR_0002s02940 (11)	scaffold_2:1806872-1807249(+) (11)	NA	O23052	Uncharacterized TPR repeat-containing protein At1g05150	AT1G05150.1	Calcium-binding tetratricopeptide family protein 	LOC_Os03g15740.1	"uncharacterized TPR repeat-containing protein, putative, expressed"	Medtr1g065540.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.137613.1.S1_s_at	A	A1TS	POPTR_0012s05810	POPTR_0012s05810 (11)	scaffold_12:5618707-5620828(+) (11)	NA	Q9LS42	Protein CASP	AT3G18480.1	CCAAT-displacement protein alternatively spliced product 	LOC_Os03g50300.1	"CASP, putative, expressed"	Medtr4g158400.1	"CASP, C-terminal "	GO:0006891|intra-Golgi vesicle-mediated transport	NA	GO:0030173|integral to Golgi membrane
PtpAffx.137618.1.S1_at	A	A1TS	POPTR_0003s11940	POPTR_0003s11940 (9)	scaffold_3:12654610-12655018(+) (9)	NA	Q8L3Z8	Protein FIZZY-RELATED 2	AT4G22910.1	FIZZY-related 2 	LOC_Os03g03150.2	"WD repeat-containing protein, putative, expressed"	Medtr5g008110.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13762.1.S1_s_at	A	A1TS	POPTR_0002s16760	POPTR_0002s16760 (11)	scaffold_2:12524728-12525112(+) (11)	NA	Q54RP0	UDP-galactose:fucoside alpha-3-galactosyltransferase	AT4G01220.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os05g32120.1	"alpha 1,3-xylosyltransferase, putative, expressed"	AC235671_3.1	Reticulon AC235671.2 18499-13273 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137632.1.S1_s_at	A	A1TS	POPTR_0004s14890	POPTR_0004s14890 (9)	scaffold_4:15546939-15547294(-) (11)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137647.1.S1_s_at	A	A1TS	POPTR_0006s14400	POPTR_0006s14400 (11)	scaffold_6:11763195-11763334(+) (11)	NA	Q8RWQ9	Thiol protease aleurain-like	AT3G45310.1	Cysteine proteinases superfamily protein 	LOC_Os09g27030.2	"oryzain gamma chain precursor, putative, expressed"	Medtr4g109600.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.137659.1.S1_at	A	A1TS	POPTR_0009s12510	POPTR_0009s12510 (11)	scaffold_9:10192681-10192931(-) (11)	NA	Q6S001	Kinesin-related protein 11	AT4G39050.1	Kinesin motor family protein 	LOC_Os10g36880.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g162930.1	"Kinesin, motor region; Zinc finger, RING-type "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.137676.1.S1_at	A	A1TS	POPTR_0016s03700	POPTR_0016s03700 (11)	scaffold_16:2058613-2059752(+) (11)	POPTR_0006s03900 (6)	Q9XX15	Probable ribosome biogenesis protein nep-1	AT3G57000.1	nucleolar essential protein-related 	LOC_Os02g18830.1	"ribosome biogenesis protein NEP1, putative, expressed"	Medtr4g033190.1	Suppressor Mra1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137685.1.S1_s_at	A	A1TS	POPTR_0004s07060	POPTR_0004s07060 (10)	scaffold_4:5873050-5875201(-) (11)	NA	NA	NA	AT5G62650.1	Tic22-like family protein 	LOC_Os01g12550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1377.1.A1_at	A	A1TS	POPTR_0009s16470	POPTR_0009s16470 (11)	scaffold_9:12496527-12496853(-) (11)	NA	O65199	"Superoxide dismutase [Cu-Zn], chloroplastic"	AT2G28190.1	copper/zinc superoxide dismutase 2 	LOC_Os08g44770.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr4g076170.1	"Superoxide dismutase, copper/zinc binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0015934|large ribosomal subunit
PtpAffx.13770.1.S1_s_at	A	A1TS	POPTR_0001s35320	POPTR_0001s35320 (11)	scaffold_1:33677872-33678412(-) (11)	NA	Q9WTK3	Glycosylphosphatidylinositol anchor attachment 1 protein	AT5G19130.2	GPI transamidase component family protein / Gaa1-like family protein 	LOC_Os01g48980.1	"GPI transamidase component family protein, putative, expressed"	Medtr4g143270.1	"Gaa1-like, GPI transamidase component "	NA	NA	GO:0042765|GPI-anchor transamidase complex||GO:0071212|subsynaptic reticulum
PtpAffx.137701.1.S1_at	A	A2TS	POPTR_0001s29790	POPTR_0001s29790 (10)//POPTR_0183s00200 (9)	scaffold_1:28402968-28403489(+) (10)//scaffold_183:2218-2742(-) (9)	NA	NA	NA	AT5G14930.2	senescence-associated gene 101 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr6g008690.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.137708.1.S1_at	A	A1TS	POPTR_0001s41070	POPTR_0001s41070 (9)	scaffold_1:40729396-40729939(+) (9)	NA	Q54ID0	Cytochrome c oxidase copper chaperone	AT3G15352.1	cytochrome c oxidase 17 	LOC_Os02g55134.1	"cytochrome c oxidase copper chaperone, putative, expressed"	Medtr2g100210.1	Cytochrome C oxidase copper chaperone 	GO:0006825|copper ion transport	GO:0016531|copper chaperone activity	GO:0005758|mitochondrial intermembrane space
PtpAffx.137722.1.S1_at	A	A1TS	POPTR_0009s01460	POPTR_0009s01460 (11)	scaffold_9:1792696-1793296(-) (11)	NA	Q8T1P1	Uncharacterized protein DDB_G0273453/DDB_G0273565	AT5G60760.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g39870.1	"2-phosphoglycerate kinase-related, putative, expressed"	AC235487_44.1	"2-phosphoglycerate kinase-related, putative AC235487.1 210241-205859 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13773.2.A1_at	A	A1TS	POPTR_0005s24600	POPTR_0005s24600 (10)	scaffold_5:23090476-23091081(-) (10)	NA	NA	NA	AT2G20515.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g43670.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137731.1.S1_s_at	A	A1TS	POPTR_0008s12680	POPTR_0008s12680 (11)	scaffold_8:8198395-8198475(+) (11)	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.2	expressed protein	Medtr4g156620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13774.1.S1_at	A	A1TS	POPTR_0001s16050	POPTR_0001s16050 (9)	scaffold_1:12857145-12857427(+) (11)	NA	O81123	Zinc transporter 1	AT3G12750.1	zinc transporter 1 precursor 	LOC_Os07g12890.2	"metal cation transporter, putative, expressed"	Medtr3g107170.2	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.13775.1.A1_at	A	A1TS	POPTR_0003s05930	POPTR_0003s05930 (11)	scaffold_3:7296792-7297174(+) (11)	NA	Q15269	Periodic tryptophan protein 2 homolog	AT1G15440.2	periodic tryptophan protein 2 	LOC_Os05g44320.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g083830.1	"Periodic tryptophan protein-associated region; Quinoprotein amine dehydrogenase, beta chain-like; WD40-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.13775.2.A1_at	A	A1TS	POPTR_0001s17340	POPTR_0001s17340 (10)	scaffold_1:14144471-14145102(-) (10)	NA	Q15269	Periodic tryptophan protein 2 homolog	AT1G15440.1	periodic tryptophan protein 2 	LOC_Os05g44320.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g083830.1	"Periodic tryptophan protein-associated region; Quinoprotein amine dehydrogenase, beta chain-like; WD40-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.13776.1.A1_at	A	A1MS	POPTR_0005s17620	POPTR_0005s17620 (10)	scaffold_5:15200725-15201021(-) (10)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT4G24660.1	homeobox protein 22 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g074550.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137765.1.S1_at	A	A2TS	POPTR_0006s27400	POPTR_0006s27400 (11)//POPTR_0018s02080 (9)	scaffold_18:1842400-1843490(-) (9)//scaffold_6:25304593-25305737(-) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.1	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13777.1.S1_at	A	A1TS	POPTR_0001s35570	POPTR_0001s35570 (11)	scaffold_1:33905247-33906607(+) (11)	NA	Q9RB36	tRNA pseudouridine synthase B	AT5G14460.1	Pseudouridine synthase family protein 	LOC_Os05g01750.1	"TruB family pseudouridylate synthase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13778.1.S1_a_at	A	A1TS	POPTR_0018s05050	POPTR_0018s05050 (11)	scaffold_18:4467840-4467997(-) (11)	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.2	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os06g36770.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13778.1.S1_at	A	A1TS	POPTR_0018s05050	POPTR_0018s05050 (11)	scaffold_18:4467291-4468330(-) (11)	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.2	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os06g36770.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137815.1.S1_at	A	A1TS	POPTR_0009s15000	POPTR_0009s15000 (10)	scaffold_9:11642333-11643391(-) (10)	NA	B0G107	Protein SAMHD1 homolog	AT5G40270.1	HD domain-containing metal-dependent phosphohydrolase family protein 	LOC_Os01g01920.2	"HD domain containing protein 2, putative, expressed"	Medtr5g035750.1	"Metal-dependent phosphohydrolase, HD region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137823.1.S1_at	A	A1TS	POPTR_0010s21430	POPTR_0010s21430 (11)	scaffold_10:18716394-18718777(-) (11)	NA	Q8Z068	Methionyl-tRNA synthetase	AT3G55400.1	methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) 	LOC_Os03g11120.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr1g023340.1	"Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.137829.1.S1_at	A	A1TS	POPTR_0001s41490	POPTR_0001s41490 (9)	scaffold_1:41118955-41119343(+) (9)	NA	Q9ZNU2	NAC domain-containing protein 18	AT3G15510.1	NAC domain containing protein  2 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.137838.1.A1_a_at	A	A1TS	POPTR_0013s03070	POPTR_0013s03070 (11)	scaffold_13:1868164-1868681(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.13785.1.S1_s_at	A	A1TS	POPTR_0001s26430	POPTR_0001s26430 (11)	scaffold_1:25466772-25466846(-) (11)	NA	Q38873	Calcium-dependent protein kinase 7	AT5G12480.1	calmodulin-domain protein kinase 7 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.137850.1.S1_s_at	A	A1TS	POPTR_0001s30610	POPTR_0001s30610 (11)	scaffold_1:29085158-29086679(-) (11)	NA	Q8L7W8	Alpha-L-fucosidase 2	AT4G34260.1	"1,2-alpha-L-fucosidases "	LOC_Os10g19880.1	"alpha-1,2-fucosidase, putative, expressed"	Medtr8g129740.1	"Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13787.1.S1_at	A	A1TS	POPTR_0002s19900	POPTR_0002s19900 (10)	scaffold_2:15835104-15835526(-) (10)	NA	NA	NA	AT1G02660.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g15000.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.137882.1.S1_at	A	A1TS	POPTR_0007s11850	POPTR_0007s11850 (9)	scaffold_7:12216049-12216405(-) (9)	NA	Q59536	Protease 2	AT5G66960.1	Prolyl oligopeptidase family protein 	LOC_Os09g29950.3	"OsPOP19 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.13789.1.S1_s_at	A	A1TS	POPTR_0014s12000	POPTR_0014s12000 (11)	scaffold_14:8883877-8884490(-) (11)	NA	Q9SRW9	Cellulose synthase-like protein D5	AT1G02730.1	cellulose synthase-like D5 	LOC_Os12g36890.1	"CSLD4 - cellulose synthase-like family D, expressed"	Medtr7g132520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.13792.1.S1_at	A	A1TS	POPTR_0015s00770	POPTR_0015s00770 (11)	scaffold_15:449606-453044(+) (11)	NA	NA	NA	AT3G49390.2	CTC-interacting domain 10 	LOC_Os08g02330.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122920.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.13792.2.S1_at	A	A1TS	POPTR_0012s02890	POPTR_0012s02890 (11)	scaffold_12:2348405-2351430(+) (11)	NA	NA	NA	AT3G49390.2	CTC-interacting domain 10 	LOC_Os08g02330.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122920.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.13792.3.S1_a_at	A	A1TS	POPTR_0015s00770	POPTR_0015s00770 (11)	scaffold_15:448736-449282(+) (11)	NA	NA	NA	AT3G49390.2	CTC-interacting domain 10 	LOC_Os08g02330.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122920.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.13792.3.S1_at	A	A1MS	POPTR_0015s00770	POPTR_0015s00770 (11)	scaffold_15:448365-449230(+) (11)	NA	NA	NA	AT3G49390.2	CTC-interacting domain 10 	LOC_Os08g02330.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122920.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.137920.1.S1_at	A	A1TS	POPTR_0007s08090	POPTR_0007s08090 (10)	scaffold_7:6581324-6583835(-) (10)	NA	NA	NA	AT1G79200.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g07420.1	"splicing factor, arginine/serine-rich 12, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137949.1.A1_s_at	A	A1TS	POPTR_0001s11990	POPTR_0001s11990 (11)	scaffold_1:9305763-9305804(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13795.1.A1_at	A	A1TS	POPTR_0017s08630	POPTR_0017s08630 (11)	scaffold_17:7247502-7247986(-) (11)	NA	Q94BZ5	Heat stress transcription factor A-5	AT4G13980.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os02g29340.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g132650.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.137956.1.S1_at	A	A1TS	POPTR_0006s25050	POPTR_0006s25050 (10)	scaffold_6:23498997-23500188(-) (10)	NA	Q8VY07	Clathrin interactor EPSIN 1	AT5G11710.1	ENTH/VHS family protein 	LOC_Os04g51120.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137959.1.S1_at	A	A1TS	POPTR_0016s11960	POPTR_0016s11960 (10)	scaffold_16:11136605-11137575(+) (10)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr4g012530.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.137964.1.S1_s_at	A	A1TS	POPTR_0013s00280	POPTR_0013s00280 (11)	scaffold_13:66506-67397(+) (11)	NA	Q6P988	Protein notum homolog	AT3G05910.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134700.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13797.1.A1_s_at	A	A1TS	POPTR_0010s20290	POPTR_0010s20290 (11)	scaffold_10:17937682-17938187(-) (11)	NA	Q9FIA0	Cytokinin-N-glucosyltransferase 2	AT3G55700.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g60960.1	"cytokinin-N-glucosyltransferase 1, putative, expressed"	Medtr3g092660.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137974.1.S1_at	A	A2TS	POPTR_0011s10390	POPTR_0011s10390 (11)//POPTR_0001s39020 (10)	scaffold_1:38265937-38266304(+) (10)//scaffold_11:12836023-12836390(+) (11)	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g47530.2	"CGMC_MAPKCMGC_2.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.137977.1.S1_s_at	A	A1TS	POPTR_0015s11610	POPTR_0015s11610 (11)	scaffold_15:12160604-12163395(+) (11)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.13798.1.S1_at	A	A1TS	POPTR_0017s13410	POPTR_0017s13410 (10)	scaffold_17:13584399-13585488(+) (10)	NA	Q42429	Agamous-like MADS-box protein AGL8 homolog	AT5G60910.1	AGAMOUS-like 8 	LOC_Os07g41370.1	"OsMADS18 - MADS-box family gene with MIKCc type-box, expressed"	Medtr8g077590.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.137981.1.S1_a_at	A	A2TS	POPTR_0012s08010	POPTR_0012s08010 (11)//POPTR_0015s08540 (11)	scaffold_12:9018800-9018989(+) (11)//scaffold_15:9827445-9827634(+) (11)	NA	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.137981.1.S1_at	A	A1TS	POPTR_0015s08540	POPTR_0015s08540 (11)	scaffold_15:9827495-9828504(+) (11)	POPTR_0012s08010 (6)	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.137984.1.S1_s_at	A	A1TS	POPTR_0013s10610	POPTR_0013s10610 (11)	scaffold_13:10972262-10972763(+) (11)	NA	Q8CFE4	SCY1-like protein 2	AT1G22870.1	Protein kinase family protein with ARM repeat domain 	LOC_Os01g42950.1	"protein kinase family protein, putative, expressed"	Medtr4g032040.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.137989.1.S1_at	A	A1TS	POPTR_0003s01530	POPTR_0003s01530 (11)	scaffold_3:1388854-1389300(+) (11)	NA	Q9LDX1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	LOC_Os12g09580.1	"leafbladeless1, putative, expressed"	Medtr2g007820.1	"Emr1, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138.2.S1_s_at	A	A1TS	POPTR_0001s00450	POPTR_0001s00450 (11)	scaffold_1:348865-350625(+) (11)	NA	NA	NA	AT4G16510.1	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g44330.1	"rho guanine nucleotide exchange factor, putative, expressed"	Medtr8g105950.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138005.1.S1_at	A	A1TS	POPTR_0004s22680	POPTR_0004s22680 (9)	scaffold_4:21538644-21539511(-) (9)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT3G44880.1	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain 	LOC_Os03g05310.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g076120.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.13804.1.S1_s_at	A	A1TS	POPTR_0005s12860	POPTR_0005s12860 (11)	scaffold_5:9669399-9669833(+) (11)	NA	Q94ID7	"Geranylgeranyl pyrophosphate synthase, chloroplastic"	AT4G36810.1	geranylgeranyl pyrophosphate synthase 1 	LOC_Os07g39270.2	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.13806.1.S1_at	A	A1TS	POPTR_0005s07170	POPTR_0005s07170 (11)	scaffold_5:4825598-4825788(-) (11)	NA	NA	NA	AT5G08720.1	CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g62170.1	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13806.2.A1_at	A	A1MS	POPTR_0005s07170	POPTR_0005s07170 (11)	scaffold_5:4822197-4822302(-) (11)	NA	NA	NA	AT5G08720.1	CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g62170.1	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13806.2.A1_s_at	A	A1TS	POPTR_0005s07170	POPTR_0005s07170 (11)	scaffold_5:4822127-4822663(-) (11)	NA	NA	NA	AT5G08720.1	CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g62170.1	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138084.1.S1_s_at	A	A1TS	POPTR_0009s06530	POPTR_0009s06530 (11)	scaffold_9:6286791-6288460(+) (11)	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13809.1.S1_at	A	A1TS	POPTR_0014s06600	POPTR_0014s06600 (9)	scaffold_14:5016790-5017231(+) (9)	NA	O22131	LOB domain-containing protein 18	AT2G45420.1	LOB domain-containing protein 18 	LOC_Os03g14270.1	"DUF260 domain containing protein, putative"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138099.1.S1_s_at	A	A1TS	POPTR_0010s01800	POPTR_0010s01800 (11)	scaffold_10:1975454-1975734(+) (11)	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.1381.1.S1_at	A	A1TS	POPTR_0011s09170	POPTR_0011s09170 (11)	scaffold_11:11329109-11329432(-) (11)	NA	Q642R9	Rab3 GTPase-activating protein catalytic subunit	AT5G55060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). 	LOC_Os07g32670.1	expressed protein	Medtr5g100640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138124.1.S1_s_at	A	A1TS	POPTR_0002s05060	POPTR_0002s05060 (11)	scaffold_2:3279147-3280236(+) (11)	POPTR_0005s23490 (7)	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr5g006700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138147.1.S1_s_at	A	A7TS	POPTR_0001s39630	POPTR_0001s39650 (11)//POPTR_0001s39630 (11)//POPTR_0001s39660 (11)//POPTR_0001s39940 (11)//POPTR_0001s39680 (11)//POPTR_0001s39920 (10)//POPTR_0001s39900 (9)	scaffold_1:38849174-38849698(+) (11)//scaffold_1:38883336-38883860(+) (11)//scaffold_1:38932461-38932985(+) (11)//scaffold_1:38975851-38976375(+) (11)//scaffold_1:39112359-39112883(+) (9)//scaffold_1:39173661-39174166(+) (10)//scaffold_1:39214434-39214958(+) (11)	POPTR_0001s39670 (6)	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.138153.1.S1_s_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (11)	scaffold_18:10249377-10251089(+) (11)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13816.1.S1_at	A	A1TS	POPTR_0001s05310	POPTR_0001s05310 (11)	scaffold_1:4080317-4080840(+) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.138160.1.S1_at	A	A1TS	POPTR_0001s11420	POPTR_0001s11420 (11)	scaffold_1:8893706-8893758(+) (11)	NA	NA	NA	AT1G64680.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os08g02210.2	expressed protein	Medtr3g109380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138160.1.S1_s_at	A	A1TS	POPTR_0001s11420	POPTR_0001s11420 (11)	scaffold_1:8893778-8894361(+) (11)	NA	NA	NA	AT1G64680.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os08g02210.2	expressed protein	Medtr3g109380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138169.1.S1_at	A	A1TS	POPTR_0002s25600	POPTR_0002s25600 (11)	scaffold_2:22690159-22690965(+) (11)	POPTR_0014s18620 (6)	Q9C0C7	Activating molecule in BECN1-regulated autophagy protein 1	AT1G04140.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g18820.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g117620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138176.1.S1_s_at	A	A1TS	POPTR_0007s09270	POPTR_0007s09270 (11)	scaffold_7:8641794-8642489(-) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G66060.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr5g022950.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.13818.1.S1_at	A	A2TS	POPTR_0019s04110	POPTR_0019s04110 (11)//POPTR_2251s00200 (11)	scaffold_19:4216364-4217012(+) (11)//scaffold_2251:384-1369(+) (11)	NA	Q9M8Y5	GDSL esterase/lipase LTL1	AT3G04290.1	Li-tolerant lipase 1 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143160.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.138182.1.S1_at	A	A1TS	POPTR_0001s03050	POPTR_0001s03050 (10)	scaffold_1:2402564-2402892(-) (10)	NA	O49725	Probable purine permease 10	AT4G18210.1	purine permease 10 	LOC_Os02g46380.2	"purine permease, putative, expressed"	Medtr2g018910.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138184.1.S1_at	A	A1TS	POPTR_0001s02650	POPTR_0001s02650 (10)	scaffold_1:2100706-2101650(-) (10)	NA	NA	NA	AT1G32540.3	lsd one like 1 	LOC_Os08g06280.2	"LSD1 zinc finger domain containing protein, expressed"	Medtr8g102780.1	"Zinc finger, LSD1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138198.1.S1_s_at	A	A2TS	POPTR_0012s09300	POPTR_0427s00200 (11)//POPTR_0012s09300 (11)	scaffold_12:10334773-10335208(-) (11)//scaffold_427:12494-12929(-) (11)	NA	NA	NA	AT5G63160.1	BTB and TAZ domain protein 1 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr8g109870.1	"Zinc finger, TAZ-type; BTB/POZ; ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.13821.1.A1_at	A	A1TS	POPTR_0018s12810	POPTR_0018s12810 (10)	scaffold_18:13335379-13336609(+) (10)	NA	Q27GK7	Topless-related protein 4	AT3G15880.1	WUS-interacting protein 2 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr8g121060.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138213.1.S1_at	A	A1TS	POPTR_0001s47540	POPTR_0001s47540 (11)	scaffold_1:47695409-47696387(+) (11)	NA	Q9FKT0	Actin-related protein 8	AT5G56180.1	actin-related protein 8 	LOC_Os04g57210.1	"actin-6, putative, expressed"	Medtr3g016840.1	Cyclin-like F-box; Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.138224.1.S1_at	A	A1TS	POPTR_0005s22580	POPTR_0005s22580 (10)	scaffold_5:21495186-21495522(-) (10)	POPTR_0002s05920 (8)	Q680C0	GDSL esterase/lipase At4g10955	AT5G50890.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g54810.1	"lipase, putative, expressed"	Medtr5g098440.1	"lipase class 3 family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138225.1.S1_at	A	A1TS	POPTR_0005s23210	POPTR_0005s23210 (11)	scaffold_5:22045922-22047858(-) (11)	NA	Q0WRC9	F-box protein SKIP17	AT4G02740.1	F-box/RNI-like superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138239.1.S1_at	A	A1TS	POPTR_0004s14260	POPTR_0004s14260 (10)	scaffold_4:14726344-14729073(+) (10)	NA	O95562	Vesicle transport protein SFT2B	AT5G23550.1	Got1/Sft2-like vescicle transport protein family 	LOC_Os02g35640.1	"SFT2, putative, expressed"	Medtr6g070860.1	SFT2-like 	GO:0016192|vesicle-mediated transport	NA	NA
PtpAffx.138243.1.S1_at	A	A1TS	POPTR_0006s21290	POPTR_0006s21290 (11)	scaffold_6:20359517-20359983(-) (11)	NA	NA	NA	AT3G11890.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os08g29100.1	"SAM domain family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138243.2.S1_a_at	A	A1TS	POPTR_0006s21290	POPTR_0006s21290 (11)	scaffold_6:20360504-20360600(-) (11)	NA	NA	NA	AT3G11890.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os08g29100.1	"SAM domain family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138248.1.S1_at	A	A1MS	POPTR_0014s13410	POPTR_0014s13410 (11)	scaffold_14:9871307-9871631(-) (11)	NA	Q6NTT6	Mitochondrial ubiquitin ligase activator of nfkb 1	AT1G63900.1	E3 Ubiquitin ligase family protein 	LOC_Os07g45350.2	"zinc finger, RING-type, putative, expressed"	Medtr1g111550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138249.1.S1_s_at	A	A1TS	POPTR_0007s06020	POPTR_0007s06020 (11)	scaffold_7:4166071-4166861(-) (11)	NA	NA	NA	AT4G39690.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane protein Mitofilin (InterPro:IPR019133); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g54410.1	expressed protein	Medtr4g140510.1	hypothetical protein 	NA	NA	GO:0031305|integral to mitochondrial inner membrane
PtpAffx.138251.1.S1_at	A	A1TS	POPTR_0008s14580	POPTR_0008s14580 (11)	scaffold_8:9663236-9664264(+) (11)	NA	Q0WPE9	Nucleobase-ascorbate transporter 7	AT1G60030.1	nucleobase-ascorbate transporter 7 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g073630.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.138263.1.S1_at	A	A1TS	POPTR_0011s09710	POPTR_0011s09710 (11)	scaffold_11:12098452-12099015(+) (11)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT5G55970.2	RING/U-box superfamily protein 	LOC_Os01g50750.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g079910.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138269.1.S1_at	A	A1TS	POPTR_0004s22110	POPTR_0004s22110 (11)	scaffold_4:21058081-21060431(+) (11)	NA	Q5H9R7	Serine/threonine-protein phosphatase 6 regulatory subunit 3	AT1G07990.1	SIT4 phosphatase-associated family protein 	LOC_Os05g51490.2	"SIT4 phosphatase-associated protein domain containing protein, expressed"	Medtr2g110170.2	SIT4 phosphatase-associated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138282.1.S1_s_at	A	A1TS	POPTR_0005s10990	POPTR_0005s10990 (11)	scaffold_5:7906316-7906829(-) (11)	NA	Q42560	Aconitate hydratase 1	AT4G35830.1	aconitase 1 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr5g022930.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.138290.1.S1_s_at	A	A1TS	POPTR_0005s21620	POPTR_0005s21620 (11)	scaffold_5:20732972-20733572(+) (11)	POPTR_0002s06710 (7)	Q9SJ22	Probable cellulose synthase A catalytic subunit 9 [UDP-forming]	AT2G21770.1	cellulose synthase A9 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr1g124990.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.138291.1.S1_s_at	A	A1TS	POPTR_0004s21100	POPTR_0004s21100 (11)	scaffold_4:20377856-20379461(-) (11)	NA	O35261	Transcription factor E2F3	AT5G22220.2	E2F transcription factor 1 	LOC_Os12g06200.1	"E2F family transcription factor protein, putative, expressed"	AC146557_13.1	Winged helix repressor DNA-binding AC146557.33 75654-81329 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
PtpAffx.138318.1.S1_s_at	A	A1TS	POPTR_0007s04870	POPTR_0007s04870 (11)	scaffold_7:3053971-3054114(-) (11)	NA	Q8LLE5	Filament-like plant protein (Fragment)	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os11g06910.2	"myosin heavy chain-related, putative, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138329.1.S1_at	A	A1TS	POPTR_0003s04650	POPTR_0003s04650 (11)	scaffold_3:5565441-5566099(-) (11)	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os01g53880.6	"OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.138338.1.S1_at	A	A1TS	POPTR_0001s38760	POPTR_0001s38760 (11)	scaffold_1:38001616-38002144(-) (11)	NA	Q9SQ80	Gibberellin 2-beta-dioxygenase 1	AT1G78440.1	Arabidopsis thaliana gibberellin 2-oxidase 1 	LOC_Os01g55240.1	"gibberellin 2-beta-dioxygenase, putative, expressed"	Medtr2g024600.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.138344.1.S1_at	A	A1TA	POPTR_0006s22690	POPTR_0006s22690 (11)	scaffold_6:21628988-21629296(-) (11)	POPTR_0006s22660 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138350.1.S1_at	A	A1TS	POPTR_0015s01020	POPTR_0015s01020 (11)	scaffold_15:593606-594108(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G46620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g02330.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g123370.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.138361.1.S1_at	A	A1TS	POPTR_0012s07840	POPTR_0012s07840 (10)	scaffold_12:8793670-8794058(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138367.1.S1_s_at	A	A1TS	POPTR_0008s07600	POPTR_0008s07600 (11)	scaffold_8:4652614-4655370(+) (11)	NA	Q93V61	Phospholipase A(1) LCAT3	AT3G03310.1	lecithin:cholesterol acyltransferase 3 	LOC_Os09g33820.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr7g090070.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138377.1.A1_at	A	A1TS	POPTR_0011s03990	POPTR_0011s03990 (9)	scaffold_11:4056307-4056584(+) (9)	NA	NA	NA	AT1G11380.1	PLAC8 family protein 	LOC_Os07g36820.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g124650.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138381.1.S1_at	A	A1TS	POPTR_0014s05830	POPTR_0014s05830 (11)	scaffold_14:4367988-4368544(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138393.1.S1_at	A	A1TA	POPTR_0005s12020	POPTR_0005s12020 (9)	scaffold_5:8801359-8801825(+) (9)	NA	NA	NA	AT3G51060.1	Lateral root primordium (LRP) protein-related 	LOC_Os09g36160.1	"LRP1, putative, expressed"	Medtr5g021040.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138426.1.S1_at	A	A1TS	POPTR_0010s24400	POPTR_0010s24400 (10)	scaffold_10:20628434-20628841(+) (10)	NA	A0JNC2	R3H domain-containing protein 2	AT3G10770.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr1g117280.1	Single-stranded nucleic acid binding R3H 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.138433.1.S1_s_at	A	A1TS	POPTR_0012s09940	POPTR_0012s09940 (11)	scaffold_12:10823568-10824827(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os08g41880.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g109230.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.13846.1.S1_at	A	A1TS	POPTR_0001s08570	POPTR_0001s08570 (11)	scaffold_1:6532576-6532893(+) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G63000.1	nucleotide-rhamnose synthase/epimerase-reductase 	LOC_Os02g45540.1	"synthase, putative, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138477.1.S1_at	A	A1TS	POPTR_0014s09540	POPTR_0014s09540 (9)	scaffold_14:7097651-7098179(+) (9)	NA	Q1ECI2	Ethylene-responsive transcription factor ERF023	AT1G01250.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g46400.1	"AP2 domain containing protein, expressed"	Medtr5g012990.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.138519.1.S1_at	A	A1TS	POPTR_0016s05850	POPTR_0016s05850 (9)	scaffold_16:3777511-3777953(-) (9)	NA	NA	NA	NA	NA	LOC_Os02g53360.1	expressed protein	Medtr7g112050.1	WRC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13856.1.S1_at	A	A1TS	POPTR_0006s04010	POPTR_0006s04010 (9)	scaffold_6:2720661-2721207(-) (9)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT3G57070.1	Glutaredoxin family protein 	LOC_Os03g24030.1	"glutaredoxin, putative, expressed"	Medtr7g107280.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.13858.1.A1_at	A	A1TS	POPTR_0003s07630	POPTR_0003s07630 (10)	scaffold_3:9161952-9162124(-) (10)	NA	O82528	60S ribosomal protein L15	AT4G16720.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.138587.1.A1_at	A	A2TS	POPTR_0553s00210	POPTR_0553s00210 (11)//POPTR_0011s13970 (9)	scaffold_11:16575600-16576050(+) (10)//scaffold_553:11822-12272(-) (11)	NA	NA	NA	AT1G50910.1	unknown protein; Has 1105 Blast hits to 802 proteins in 217 species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other Eukaryotes - 207 (source: NCBI BLink). 	LOC_Os09g32710.1	expressed protein	Medtr3g020830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138591.1.A1_at	A	A1TS	POPTR_0010s00800	POPTR_0010s00800 (11)	scaffold_10:513288-513714(+) (11)	NA	Q9Y4D2	Sn1-specific diacylglycerol lipase alpha	AT4G16070.1	"Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 "	LOC_Os01g20840.1	"lipase class 3 family protein, putative, expressed"	Medtr8g025380.1	"lipase class 3 family protein, related "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.138607.1.A1_at	A	A1MS	POPTR_0010s26060	POPTR_0010s26060 (11)	scaffold_10:21434027-21434094(-) (11)	NA	NA	NA	AT1G16790.1	ribosomal protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138607.1.A1_s_at	A	A1TS	POPTR_0010s26060	POPTR_0010s26060 (11)	scaffold_10:21434127-21434302(-) (11)	NA	NA	NA	AT1G16790.1	ribosomal protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138614.1.A1_at	A	A1TS	POPTR_0013s10990	POPTR_0013s10990 (11)	scaffold_13:11667882-11668055(-) (11)	POPTR_0013s09940 (6)	Q94K73	"Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial"	AT3G58140.1	phenylalanyl-tRNA synthetase class IIc family protein 	LOC_Os12g34860.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr7g094230.1	"Phenylalanyl-tRNA synthetase, mitochondrial; Ribosomal protein L20; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0008033|tRNA processing||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.138621.1.A1_at	A	A2TS	POPTR_0003s21140	POPTR_0629s00210 (11)//POPTR_0003s21140 (11)	scaffold_3:19412425-19413356(+) (11)//scaffold_629:10813-11725(-) (11)	NA	O05235	Uncharacterized hydrolase yugF	AT5G19850.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g38830.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr5g067450.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138621.2.S1_a_at	A	A1TS	POPTR_0003s21140	POPTR_0003s21140 (9)	scaffold_3:19411189-19411296(+) (9)	NA	O05235	Uncharacterized hydrolase yugF	AT5G19850.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g38830.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr5g067450.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138630.1.A1_at	A	A1TS	POPTR_0001s20370	POPTR_0001s20370 (11)	scaffold_1:18256296-18256665(-) (11)	POPTR_0008s02760 (8)	Q8LPH6	Transcription factor MYB86	AT3G13890.2	myb domain protein 26 	LOC_Os01g51260.1	"MYB family transcription factor, putative, expressed"	Medtr2g120890.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138635.1.A1_at	A	A1TS	POPTR_0019s08650	POPTR_0019s08650 (11)	scaffold_19:10182333-10183253(-) (11)	NA	Q6DBN5	U-box domain-containing protein 62	AT5G05230.1	RING/U-box superfamily protein 	LOC_Os03g60140.1	"U-box domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13864.1.A1_at	A	A1TS	POPTR_0016s00540	POPTR_0016s00540 (11)	scaffold_16:183444-183796(-) (11)	NA	Q28147	Nuclear inhibitor of protein phosphatase 1	AT5G47790.1	SMAD/FHA domain-containing protein  	LOC_Os08g23680.3	"FHA domain containing protein, putative, expressed"	Medtr2g032980.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138640.1.A1_at	A	A1TS	POPTR_0008s05650	POPTR_0008s05650 (9)	scaffold_8:3286703-3287133(+) (9)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os05g02020.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13865.2.S1_at	A	A1TS	POPTR_0016s02530	POPTR_0016s02530 (9)	scaffold_16:1249186-1249251(+) (9)	NA	NA	NA	AT3G56810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g104760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138650.1.A1_s_at	A	A1TS	POPTR_0015s01330	POPTR_0015s01330 (9)	scaffold_15:826379-826818(+) (11)	NA	NA	NA	AT5G26760.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g04370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1387.1.A1_at	A	A1TS	POPTR_0009s08000	POPTR_0009s08000 (11)	scaffold_9:7420996-7421210(-) (11)	NA	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os03g18454.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed"	Medtr3g034410.1	"Gamma-interferon-inducible lysosomal thiol reductase precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138763.1.A1_at	A	A1TS	POPTR_0013s01990	POPTR_0013s01990 (11)	scaffold_13:1149797-1149904(-) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT3G50700.1	indeterminate(ID)-domain 2 	LOC_Os02g31890.1	ZOS2-08 - C2H2 zinc finger protein	Medtr7g130150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.13877.1.S1_at	A	A1TS	POPTR_0007s08380	POPTR_0007s08380 (10)	scaffold_7:7149321-7149822(+) (10)	NA	Q0VFE3	Post-GPI attachment to proteins factor 3	AT1G16560.3	Per1-like family protein 	LOC_Os05g13330.1	"per1-like family protein, putative, expressed"	Medtr6g089390.1	Per1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138786.1.A1_at	A	A1TS	POPTR_0005s21670	POPTR_0005s21670 (11)	scaffold_5:20773301-20774011(+) (11)	NA	Q2KI24	Methenyltetrahydrofolate synthase domain-containing protein	AT1G76730.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os12g07020.1	"5-formyltetrahydrofolate cyclo-ligase, putative, expressed"	NA	NA	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0030272|5-formyltetrahydrofolate cyclo-ligase activity	NA
PtpAffx.138791.1.A1_at	A	A1TS	POPTR_0002s25080	POPTR_0002s25080 (11)	scaffold_2:22274368-22274564(+) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT3G25290.2	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr7g046190.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138801.1.A1_at	A	A1TS	POPTR_0012s01800	POPTR_0012s01800 (11)	scaffold_12:1357207-1357765(-) (11)	NA	Q9LFT8	Cyclin-dependent kinase C-1	AT5G10270.1	cyclin-dependent kinase C;1 	LOC_Os01g72790.1	"cyclin-dependent kinase, putative, expressed"	Medtr5g008910.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138813.1.A1_s_at	A	A1TS	POPTR_0013s00580	POPTR_0013s00580 (11)	scaffold_13:273308-273905(-) (11)	NA	Q91V92	ATP-citrate synthase	AT1G09430.1	ATP-citrate lyase A-3 	LOC_Os11g47330.1	"ATP-grasp domain containing protein, expressed"	Medtr5g035230.1	"ATP-grasp fold, succinyl-CoA synthetase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138829.1.A1_at	A	A1TS	POPTR_0011s09610	POPTR_0011s09610 (11)	scaffold_11:11952810-11953149(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G55830.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g17490.1	expressed protein	Medtr3g009180.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138853.1.A1_at	A	A1TS	POPTR_0002s01040	POPTR_0002s01040 (9)	scaffold_2:524614-524709(+) (9)	NA	P46573	"Protein kinase APK1B, chloroplastic"	AT1G76360.1	Protein kinase superfamily protein 	LOC_Os04g47620.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138864.1.A1_at	A	A1TS	POPTR_0006s11590	POPTR_0006s11590 (11)	scaffold_6:8806136-8806359(+) (11)	NA	Q2PCF1	Pleiotropic drug resistance protein 2	AT1G66950.1	pleiotropic drug resistance 11 	LOC_Os01g42410.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr7g126900.1	PAK-box/P21-Rho-binding; AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.13888.1.S1_at	A	A1TS	POPTR_0004s10680	POPTR_0004s10680 (11)	scaffold_4:9203679-9204631(+) (11)	NA	NA	NA	AT5G08120.1	movement protein binding protein 2C 	LOC_Os06g17440.1	"microtubule-associated protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138886.1.A1_at	A	A1TS	POPTR_0011s14180	POPTR_0011s14180 (11)	scaffold_11:16688868-16690614(+) (11)	NA	NA	NA	AT5G54920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g53450.1	expressed protein	Medtr3g068300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138893.1.A1_at	A	A1TS	POPTR_0002s14050	POPTR_0002s14050 (10)	scaffold_2:10406049-10406676(-) (10)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1389.1.S1_at	A	A1TS	POPTR_0009s02660	POPTR_0009s02660 (11)	scaffold_9:3425065-3425291(+) (11)	NA	P27164	Calmodulin-related protein	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138918.1.A1_at	A	A1TS	POPTR_0006s10420	POPTR_0006s10420 (11)	scaffold_6:7794853-7794935(-) (11)	NA	P70168	Importin subunit beta-1	AT3G08947.1	ARM repeat superfamily protein 	LOC_Os05g28510.4	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.13893.1.S1_at	A	A1TS	POPTR_0012s14310	POPTR_0012s14310 (10)	scaffold_12:14241182-14241666(-) (10)	NA	NA	NA	AT5G51670.1	Protein of unknown function (DUF668) 	LOC_Os03g64130.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr7g034900.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138948.1.A1_at	A	A1TS	POPTR_0005s25440	POPTR_0005s25440 (11)	scaffold_5:23697173-23697448(-) (11)	NA	P43297	Cysteine proteinase RD21a	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os05g43230.1	"oryzain alpha chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.138988.1.S1_at	A	A1TS	POPTR_0016s12480	POPTR_0016s12480 (9)	scaffold_16:11939821-11940159(-) (9)	NA	NA	NA	AT5G01370.1	ALC-interacting protein 1 	NA	NA	Medtr4g013080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138990.1.S1_s_at	A	A1TS	POPTR_0012s05000	POPTR_0012s05000 (11)	scaffold_12:4499566-4499820(-) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT1G73760.1	RING/U-box superfamily protein 	LOC_Os01g49770.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g096250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138996.1.S1_at	A	A1TS	POPTR_0002s13070	POPTR_0002s13070 (11)	scaffold_2:9726756-9727467(+) (11)	NA	Q9SZA7	Probable disease resistance protein At4g33300	AT4G33300.2	ADR1-like 1 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr1g025080.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.139.1.S1_at	A	A1TS	POPTR_0019s05220	POPTR_0019s05220 (10)	scaffold_19:5488476-5488624(+) (10)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr7g102590.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.139005.1.S1_at	A	A1TS	POPTR_0010s23650	POPTR_0010s23650 (11)	scaffold_10:20172583-20173439(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G04410.1	NAC domain containing protein 2 	LOC_Os05g35170.2	"no apical meristem protein, putative, expressed"	Medtr8g073410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.139026.1.S1_s_at	A	A1TS	POPTR_0008s10010	POPTR_0008s10010 (11)	scaffold_8:6241939-6243125(+) (11)	NA	Q9LNF4	Probable protein phosphatase 2C 13	AT1G48040.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037290.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139026.2.S1_at	A	A1TS	POPTR_0010s16130	POPTR_0010s16130 (11)	scaffold_10:15155021-15156170(-) (11)	NA	Q9LNF4	Probable protein phosphatase 2C 13	AT1G48040.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037290.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139032.1.S1_at	A	A1TS	POPTR_0010s10010	POPTR_0010s10010 (11)	scaffold_10:10613121-10614117(+) (11)	NA	Q94AZ2	Sugar transport protein 13	AT5G26340.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.139048.1.S1_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (11)	scaffold_14:13871227-13871286(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.139048.1.S1_s_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (11)	scaffold_14:13871285-13872424(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.139060.1.S1_at	A	A1TS	POPTR_0007s12520	POPTR_0007s12520 (11)	scaffold_7:12812581-12813682(-) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os03g10140.1	"ZOS3-04 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.139062.1.S1_at	A	A1TS	POPTR_0010s04470	POPTR_0010s04470 (11)	scaffold_10:5560419-5560845(+) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G69910.1	Protein kinase superfamily protein 	LOC_Os03g58750.1	"protein kinase domain containing protein, expressed"	Medtr5g038490.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.139063.1.S1_at	A	A1TS	POPTR_0002s23760	POPTR_0002s23760 (9)	scaffold_2:21265302-21265762(+) (9)	POPTR_0002s23770 (8)	Q9LR44	Indole-3-acetate beta-glucosyltransferase 1	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139086.1.S1_at	A	A1TS	POPTR_0014s01470	POPTR_0014s01470 (11)	scaffold_14:1410314-1410614(-) (11)	NA	Q9FZI8	Lecithin-cholesterol acyltransferase-like 1	AT1G27480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g52010.1	"lecithin cholesterol acyltransferase, putative, expressed"	Medtr2g091450.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
PtpAffx.139089.1.S1_at	A	A1TS	POPTR_0018s09450	POPTR_0018s09450 (11)	scaffold_18:10344574-10344932(-) (11)	NA	NA	NA	AT4G15450.1	Senescence/dehydration-associated protein-related 	LOC_Os01g52480.1	"senescence-associated protein, putative, expressed"	Medtr4g159850.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139092.1.S1_at	A	A1TS	POPTR_0010s12930	POPTR_0010s12930 (11)	scaffold_10:12851144-12851748(-) (11)	NA	Q9XI60	Lipid phosphate phosphatase 2	AT1G15080.1	lipid phosphate phosphatase 2 	LOC_Os08g27040.1	"lipid phosphatase protein, putative, expressed"	Medtr7g093870.1	"Phosphoesterase, PA-phosphatase related "	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.1391.1.S1_at	A	A1TS	POPTR_0006s09730	POPTR_0006s09730 (9)	scaffold_6:7162559-7162645(+) (9)	NA	NA	NA	AT3G09090.1	defective in exine formation protein (DEX1) 	LOC_Os03g61050.1	"FG-GAP repeat-containing protein, putative, expressed"	Medtr4g012280.1	"DEX1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13910.1.S1_a_at	A	A1TS	POPTR_0006s10750	POPTR_0006s10750 (11)	scaffold_6:8107911-8108664(-) (11)	NA	NA	NA	AT2G40435.1	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g47960.1	"basic helix-loop-helix domain containing protein, expressed"	Medtr5g091250.1	"transcription regulator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139103.1.S1_s_at	A	A1TS	POPTR_0010s15450	POPTR_0010s15450 (11)	scaffold_10:14687668-14689207(-) (11)	NA	Q94A16	"Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial"	AT3G66654.2	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g29390.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.139103.2.S1_at	A	A1TS	POPTR_0008s10530	POPTR_0008s10530 (11)	scaffold_8:6601789-6603090(+) (11)	NA	Q94A16	"Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial"	AT3G66654.2	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g29390.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.139103.2.S1_s_at	A	A2TS	POPTR_0008s10530	POPTR_0008s10530 (11)//POPTR_0010s15450 (11)	scaffold_10:14686598-14687084(-) (11)//scaffold_8:6602431-6602867(+) (11)	NA	Q94A16	"Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial"	AT3G66654.2	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g29390.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.139109.1.S1_s_at	A	A1TS	POPTR_0001s23460	POPTR_0001s23460 (11)	scaffold_1:22810266-22812451(-) (9)//scaffold_1:22867772-22869861(-) (11)	POPTR_0001s23450 (7)	A2SY66	Vicianin hydrolase (Fragment)	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39880.1	"Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.139113.1.S1_at	A	A1TS	POPTR_0003s04970	POPTR_0003s04970 (11)	scaffold_3:6077060-6078754(+) (11)	NA	NA	NA	AT3G16200.1	unknown protein; Has 97 Blast hits to 97 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). 	LOC_Os01g31220.1	expressed protein	Medtr2g122550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13912.1.S1_at	A	A1TS	POPTR_0003s10720	POPTR_0003s10720 (11)	scaffold_3:11629539-11630115(+) (11)	NA	Q9WZ25	3-isopropylmalate dehydratase small subunit 2	AT2G43090.1	Aconitase/3-isopropylmalate dehydratase protein 	LOC_Os02g43830.2	"3-isopropylmalate dehydratase small subunit 2, putative, expressed"	NA	NA	GO:0008152|metabolic process	NA	NA
PtpAffx.139136.1.S1_at	A	A1TS	POPTR_0007s04120	POPTR_0007s04120 (11)	scaffold_7:2484008-2484536(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G20015.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58070.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139139.1.S1_at	A	A1TS	POPTR_0001s17360	POPTR_0001s17360 (10)	scaffold_1:14162375-14164052(-) (10)	NA	Q9WTL7	Acyl-protein thioesterase 2	AT3G15650.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g07960.3	"acyl-protein thioesterase, putative, expressed"	Medtr2g125780.1	Phospholipase/Carboxylesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.13915.1.S1_at	A	A1TS	POPTR_0014s01530	POPTR_0014s01530 (11)	scaffold_14:1454384-1455271(-) (11)	NA	NA	NA	AT4G33800.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g005430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139151.1.S1_at	A	A1TS	POPTR_0009s01240	POPTR_0009s01240 (10)	scaffold_9:1450776-1451109(-) (10)	NA	Q8GW72	Alpha-L-fucosidase 1	AT2G28100.1	alpha-L-fucosidase 1 	LOC_Os04g47280.1	"ATFUC1, putative, expressed"	Medtr2g113690.1	"Glycoside hydrolase, family 29 (alpha-L-fucosidase); Galactose-binding like "	GO:0005975|carbohydrate metabolic process	GO:0004560|alpha-L-fucosidase activity	NA
PtpAffx.139160.1.S1_at	A	A1TS	POPTR_0007s10820	POPTR_0007s10820 (11)	scaffold_7:10986755-10987291(-) (11)	NA	NA	NA	AT4G34090.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g01920.1	expressed protein	Medtr7g127140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139165.1.S1_at	A	A2TS	POPTR_0005s18730	POPTR_0005s18730 (11)//POPTR_0007s03230 (11)	scaffold_5:17003313-17003555(+) (11)//scaffold_7:1846451-1846693(+) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.139172.2.S1_s_at	A	A1TS	POPTR_0019s12550	POPTR_0019s12550 (11)	scaffold_19:13600742-13602375(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G59690.1	IQ-domain 13 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13918.1.S1_at	A	A1TS	POPTR_0004s19470	POPTR_0004s19470 (11)	scaffold_4:19310305-19311159(+) (11)	NA	Q02921	Early nodulin-93	AT5G25940.1	early nodulin-related 	LOC_Os06g05020.1	"early nodulin 93 ENOD93 protein, putative, expressed"	Medtr8g119590.1	Early nodulin 93 ENOD93 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139198.1.A1_at	A	A1TS	POPTR_0010s10400	POPTR_0010s10400 (10)	scaffold_10:10917125-10918989(-) (10)	NA	Q9CYW4	Haloacid dehalogenase-like hydrolase domain-containing protein 3	AT1G14310.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g07300.2	"haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed"	Medtr5g040970.1	"HAD-superfamily subfamily IA hydrolase, REG-2-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.139201.1.A1_at	A	A1MS	POPTR_0008s16580	POPTR_0008s16580 (11)	scaffold_8:11126943-11127257(-) (11)	NA	P93823	RING-H2 finger protein ATL1	AT1G04360.1	RING/U-box superfamily protein 	LOC_Os02g57460.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr1g042550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139236.1.S1_at	A	A1MS	POPTR_0008s08720	POPTR_0008s08720 (10)	scaffold_8:5379629-5380162(-) (10)	NA	Q9SAK5	Myb family transcription factor APL	AT1G69580.2	Homeodomain-like superfamily protein 	LOC_Os03g20900.1	"Myb transcription factor, putative, expressed"	Medtr4g111390.1	"Peptidase M22, glycoprotease; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13928.1.S1_at	A	A1TS	POPTR_0006s05850	POPTR_0006s05850 (11)	scaffold_6:4118417-4120592(+) (11)	NA	Q9FG23	CDK5RAP3-like protein	AT5G06830.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 365 Blast hits to 359 proteins in 109 species: Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 	LOC_Os06g21560.1	"CDK5RAP3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13928.2.A1_at	A	A1MS	POPTR_0006s05850	POPTR_0006s05850 (11)	scaffold_6:4118113-4118293(+) (11)	NA	Q9FG23	CDK5RAP3-like protein	AT5G06830.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 365 Blast hits to 359 proteins in 109 species: Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 	LOC_Os06g21560.1	"CDK5RAP3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13929.1.A1_at	A	A1TS	POPTR_0001s26430	POPTR_0001s26430 (11)	scaffold_1:25465624-25465923(-) (11)	NA	Q38873	Calcium-dependent protein kinase 7	AT5G12480.1	calmodulin-domain protein kinase 7 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.139301.1.S1_s_at	A	A1TS	POPTR_0005s20600	POPTR_0005s20600 (11)	scaffold_5:19637522-19639665(+) (11)	POPTR_0002s07770 (7)	Q8CFV9	Riboflavin kinase	AT4G21470.1	riboflavin kinase/FMN hydrolase 	LOC_Os10g32730.1	"haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed"	Medtr4g125160.1	"HAD-superfamily hydrolase subfamily IA, variant 3; Epoxide hydrolase N-terminal domain-like phosphatase "	GO:0009231|riboflavin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0008531|riboflavin kinase activity	NA
PtpAffx.139312.1.S1_at	A	A1TS	POPTR_0003s14370	POPTR_0003s14370 (9)	scaffold_3:14452037-14452982(-) (9)	NA	Q54ML1	Glutamine-dependent NAD(+) synthetase	AT1G55090.1	carbon-nitrogen hydrolase family protein 	LOC_Os07g07260.1	"glutamine-dependent NAD, putative, expressed"	NA	NA	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.139313.1.S1_at	A	A1TS	POPTR_0001s21160	POPTR_0001s21160 (11)	scaffold_1:19536540-19536983(+) (11)	NA	NA	NA	AT1G15760.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g55120.1	"jp18, putative, expressed"	Medtr4g006090.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139327.1.S1_at	A	A1TS	POPTR_0016s13390	POPTR_0016s13390 (10)	scaffold_16:12579985-12581856(-) (10)	NA	NA	NA	AT3G08780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 129 Blast hits to 129 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os07g35600.2	expressed protein	Medtr4g011620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139342.1.S1_at	A	A1TS	POPTR_0014s12150	POPTR_0014s12150 (11)	scaffold_14:8979210-8979944(-) (11)	NA	O52177	GTP pyrophosphokinase	AT4G02260.2	RELA/SPOT homolog 1 	LOC_Os03g22160.1	"relA-SpoT like protein RSH1, putative, expressed"	Medtr8g025050.2	"Metal-dependent phosphohydrolase, HD subdomain "	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.139389.1.S1_at	A	A1TS	POPTR_0005s17320	POPTR_0005s17320 (11)	scaffold_5:14634726-14635152(-) (11)	NA	NA	NA	AT1G78310.1	VQ motif-containing protein 	NA	NA	Medtr3g150400.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139435.1.S1_at	A	A1MS	POPTR_0008s19470	POPTR_0008s19470 (10)	scaffold_8:13412250-13415949(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139439.1.S1_at	A	A1TS	POPTR_0014s07270	POPTR_0014s07270 (11)	scaffold_14:5492808-5495539(-) (11)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.139442.1.S1_s_at	A	A1TS	POPTR_0012s14190	POPTR_0012s14190 (11)	scaffold_12:14166053-14167284(-) (11)	NA	Q39189	DEAD-box ATP-dependent RNA helicase 7	AT5G62190.1	DEAD box RNA helicase (PRH75) 	LOC_Os09g34910.1	"DEAD-box ATP-dependent RNA helicase 7, putative, expressed"	Medtr1g130350.1	"Helicase, C-terminal; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.139448.1.S1_a_at	A	A1TS	POPTR_0015s13790	POPTR_0015s13790 (11)	scaffold_15:13574712-13575043(+) (11)	NA	A5A7I7	Calcium-dependent protein kinase 4	AT1G12580.1	phosphoenolpyruvate carboxylase-related kinase 1 	LOC_Os06g03682.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g129530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.139449.1.S1_s_at	A	A1TS	POPTR_0002s13010	POPTR_0002s13010 (11)	scaffold_2:9668088-9668786(-) (11)	NA	P34422	Dipeptidyl peptidase family member 6	AT5G36210.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g11180.1	"OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr3g068350.1	"Peptidase S9, prolyl oligopeptidase active site region "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.139453.1.S1_at	A	A1TS	POPTR_0006s14150	POPTR_0006s14150 (11)	scaffold_6:11456866-11457490(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os07g42380.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g132790.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.13946.1.A1_at	A	A1TS	POPTR_0017s07070	POPTR_0017s07070 (11)	scaffold_17:5497478-5498783(+) (11)	NA	NA	NA	AT4G33625.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os07g02710.1	expressed protein	Medtr2g009650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13947.1.A1_s_at	A	A1TS	POPTR_0013s01950	POPTR_0013s01950 (11)	scaffold_13:1121875-1122360(-) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT3G05420.2	acyl-CoA binding protein 4 	LOC_Os03g61930.1	"ACBP4, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.139478.1.S1_at	A	A1TS	POPTR_0006s08210	POPTR_0006s08210 (10)	scaffold_6:5970716-5971549(-) (10)	NA	NA	NA	AT2G37480.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g02260.2	expressed protein	Medtr7g118380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139482.1.S1_at	A	A1TS	POPTR_0001s08690	POPTR_0001s08690 (11)	scaffold_1:6640008-6641168(-) (11)	NA	Q5R831	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT4G23010.1	UDP-galactose transporter 2 	LOC_Os03g02670.2	"transporter family protein, putative, expressed"	Medtr7g083930.2	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139484.1.S1_at	A	A1TS	POPTR_0007s14900	POPTR_0007s14900 (10)	scaffold_7:14593732-14594308(+) (10)	POPTR_0014s01000 (8)	A4XP61	Amino-acid acetyltransferase	AT4G37670.2	N-acetyl-l-glutamate synthase 2 	LOC_Os03g31690.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g015470.1	Amino-acid N-acetyltransferase (ArgA) 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.139489.1.S1_s_at	A	A1TS	POPTR_0001s26960	POPTR_0001s26960 (11)	scaffold_1:25935994-25936446(-) (11)	NA	NA	NA	AT5G12470.1	Protein of unknown function (DUF3411) 	LOC_Os05g32230.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139512.1.S1_at	A	A1TS	POPTR_0009s04540	POPTR_0009s04540 (9)	scaffold_9:4870663-4872468(+) (9)	NA	Q9ZW34	Cytosolic enolase 3	AT2G29560.1	cytosolic enolase 	LOC_Os03g15950.1	"enolase, putative, expressed"	Medtr5g104640.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
PtpAffx.139515.1.S1_at	A	A1TS	POPTR_0015s15740	POPTR_0015s15740 (10)	scaffold_15:14959765-14959989(+) (10)//scaffold_15:14965654-14965878(+) (10)	NA	NA	NA	AT4G19670.2	RING/U-box superfamily protein 	LOC_Os12g43560.1	"zinc finger, putative, expressed"	Medtr2g034440.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139528.1.S1_at	A	A1TS	POPTR_0016s14670	POPTR_0016s14670 (11)	scaffold_16:13826328-13827229(-) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT3G08570.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02620.1	"BTBN21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr7g080500.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.139528.2.A1_at	A	A1TA	POPTR_0016s14670	POPTR_0016s14670 (11)	scaffold_16:13826056-13826420(+) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT3G08570.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02620.1	"BTBN21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr7g080500.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.139530.1.S1_s_at	A	A1TS	POPTR_0002s00980	POPTR_0002s00980 (11)	scaffold_2:481732-482337(-) (11)	NA	Q5QMM3	WUSCHEL-related homeobox 8	AT4G35550.1	WUSCHEL related homeobox 13 	LOC_Os01g60270.2	"homeobox domain containing protein, expressed"	Medtr7g025190.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.139530.2.S1_s_at	A	A2TS	POPTR_0002s00980	POPTR_0002s00980 (11)//POPTR_0005s27410 (11)	scaffold_2:482430-482537(-) (11)//scaffold_5:25097855-25097962(+) (11)	NA	Q5QMM3	WUSCHEL-related homeobox 8	AT4G35550.1	WUSCHEL related homeobox 13 	LOC_Os01g60270.2	"homeobox domain containing protein, expressed"	Medtr7g025190.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.139544.1.S1_at	A	A1TS	POPTR_0004s04310	POPTR_0004s04310 (10)	scaffold_4:3086464-3087536(-) (10)	NA	NA	NA	AT4G21610.1	lsd one like 2 	LOC_Os01g42710.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g102780.1	"Zinc finger, LSD1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139547.1.S1_at	A	A1TS	POPTR_0009s11450	POPTR_0009s11450 (9)	scaffold_9:9511185-9511867(-) (9)	NA	Q8H124	"Uncharacterized protein At2g34460, chloroplastic"	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g01044.1	"isoflavone reductase, putative, expressed"	Medtr8g121780.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139572.1.S1_s_at	A	A1TS	POPTR_0002s05580	POPTR_0002s05580 (11)	scaffold_2:3652183-3652696(-) (11)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139579.1.S1_at	A	A1TS	POPTR_0006s06390	POPTR_0006s06390 (11)	scaffold_6:4554399-4558287(+) (11)	NA	Q9LHS0	Putative clathrin assembly protein At5g35200	AT5G35200.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os06g07830.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr8g121480.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.139596.1.S1_at	A	A1TS	POPTR_0018s09290	POPTR_0018s09290 (10)	scaffold_18:10174090-10174609(+) (10)	NA	NA	NA	AT2G20010.2	Protein of unknown function (DUF810) 	LOC_Os09g17760.1	expressed protein	Medtr1g143550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139618.1.S1_at	A	A2TS	POPTR_0001s34620	POPTR_0001s34620 (11)//POPTR_0017s10910 (11)	scaffold_1:32856607-32856641(+) (11)//scaffold_17:10500224-10500258(+) (11)	NA	Q9SSA5	"Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic"	AT3G01480.1	cyclophilin 38 	LOC_Os08g29370.1	"peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.139618.1.S1_s_at	A	A1TS	POPTR_0001s34620	POPTR_0001s34620 (10)	scaffold_1:32856637-32858438(+) (10)	POPTR_0017s10910 (6)	Q9SSA5	"Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic"	AT3G01480.1	cyclophilin 38 	LOC_Os08g29370.1	"peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.139646.1.S1_s_at	A	A1TS	POPTR_0011s14840	POPTR_0011s14840 (11)	scaffold_11:17093775-17095824(+) (11)	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.139697.1.S1_s_at	A	A1TS	POPTR_0003s02540	POPTR_0003s02540 (11)	scaffold_3:2642563-2643979(+) (11)	NA	A5UUN1	Formamidopyrimidine-DNA glycosylase	AT1G52500.2	MUTM homolog-1 	LOC_Os08g21330.1	"formamidopyrimidine-DNA glycosylase, putative, expressed"	Medtr2g126800.1	"Formamidopyrimidine-DNA glycolase; Formamidopyrimidine-DNA glycosylase, catalytic "	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0016799|""hydrolase activity, hydrolyzing N-glycosyl compounds""||GO:0003906|DNA-(apurinic or apyrimidinic site) lyase activity||GO:0003684|damaged DNA binding||GO:0008270|zinc ion binding"	NA
PtpAffx.139698.1.A1_at	A	A1TS	POPTR_0004s07640	POPTR_0004s07640 (11)	scaffold_4:6275339-6275690(+) (11)	NA	Q9FGV1	Auxin response factor 8	AT5G37020.1	auxin response factor 8 	LOC_Os04g57610.1	"auxin response factor, putative, expressed"	Medtr5g084140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.139716.1.S1_at	A	A1TS	POPTR_0007s13650	POPTR_0007s13650 (11)	scaffold_7:13675296-13676612(-) (11)	NA	Q70E96	Aldehyde dehydrogenase family 3 member F1	AT4G36250.1	aldehyde dehydrogenase 3F1 	LOC_Os04g45720.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g090560.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.139725.1.S1_s_at	A	A1TS	POPTR_0014s09780	POPTR_0014s09780 (11)	scaffold_14:7293343-7293718(-) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G46620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g02330.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g123370.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.139752.1.S1_at	A	A1TS	POPTR_0010s25900	POPTR_0010s25900 (11)	scaffold_10:21346689-21353862(-) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139754.1.S1_at	A	A1TS	POPTR_0012s07460	POPTR_0012s07460 (11)	scaffold_12:8377084-8377806(+) (11)	NA	NA	NA	AT3G47850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to 57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os05g13390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13976.1.A1_at	A	A1TS	POPTR_0001s15110	POPTR_0001s15110 (11)	scaffold_1:11969386-11970573(+) (11)	NA	Q13395	Probable methyltransferase TARBP1	AT4G17610.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os03g01110.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.13977.1.S1_at	A	A1TS	POPTR_0013s05400	POPTR_0013s05400 (11)	scaffold_13:3856588-3856748(-) (11)	NA	NA	NA	AT5G56540.1	arabinogalactan protein 14 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13977.1.S1_x_at	A	A1TS	POPTR_0013s05400	POPTR_0013s05400 (11)	scaffold_13:3856580-3856769(-) (11)	NA	NA	NA	AT5G56540.1	arabinogalactan protein 14 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1398.12.A1_a_at	A	A1TS	POPTR_0002s17750	POPTR_0002s17750 (11)	scaffold_2:13590859-13591321(+) (11)	NA	O49687	Transcription factor MYC4	AT4G17880.1	Basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.1398.2.A1_a_at	A	A1TS	POPTR_0008s11310	POPTR_0008s11310 (11)	scaffold_8:7159495-7159813(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1398.4.A1_a_at	A	A1TS	POPTR_0001s08910	POPTR_0001s08910 (11)	scaffold_1:6810726-6811093(+) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT4G23060.1	IQ-domain 22 	LOC_Os04g48160.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g129280.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139802.1.S1_at	A	A1TS	POPTR_0005s26230	POPTR_0005s26230 (9)	scaffold_5:24297898-24298215(+) (11)	NA	NA	NA	AT4G24175.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g24410.1	"kinesin heavy chain isolog, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139845.1.S1_at	A	A1TS	POPTR_0009s05150	POPTR_0009s05150 (11)	scaffold_9:5310467-5311310(+) (11)	NA	Q9LUZ4	Zinc finger CCCH domain-containing protein 66	AT5G58620.1	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g079420.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.1399.1.S1_s_at	A	A1TS	POPTR_0006s00460	POPTR_0006s00460 (11)	scaffold_6:220346-220788(-) (11)	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30210.1	expressed protein	Medtr2g033120.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139904.1.S1_at	A	A1TS	POPTR_0008s02540	POPTR_0008s02540 (9)	scaffold_8:1243886-1244373(+) (9)	NA	NA	NA	AT3G52240.1	unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). 	LOC_Os05g37340.1	expressed protein	Medtr1g116860.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139944.1.A1_at	A	A1TS	POPTR_0016s02900	POPTR_0016s02900 (11)	scaffold_16:1441866-1442237(+) (11)	NA	Q62383	Transcription elongation factor SPT6	AT1G65440.2	global transcription factor group B1 	LOC_Os05g41510.1	"SH2 motif, putative, expressed"	Medtr7g105590.1	"Alcohol dehydrogenase, zinc-containing; RNA binding S1; Resolvase, RNase H-like fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139950.1.A1_at	A	A1TS	POPTR_0001s45510	POPTR_0001s45510 (11)	scaffold_1:46024398-46024710(+) (11)	NA	Q9MAP3	"50S ribosomal protein L11, chloroplastic"	AT1G32990.1	plastid ribosomal protein l11 	LOC_Os03g03020.1	"L11 domain containing ribosomal protein, putative, expressed"	Medtr3g109450.1	Ribosomal protein L11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.139964.1.A1_at	A	A1TS	POPTR_0010s13020	POPTR_0010s13020 (11)	scaffold_10:12930671-12931152(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139993.1.A1_at	A	A1TS	POPTR_0001s30940	POPTR_0001s30940 (11)	scaffold_1:29361890-29362315(-) (11)	NA	Q8T9S7	"Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN"	AT3G19420.1	PTEN 2 	LOC_Os12g21890.1	"PTEN, putative, expressed"	Medtr5g016480.1	"Dual specificity protein phosphatase; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14.1.S1_at	A	A1MS	POPTR_0001s37280	POPTR_0001s37280 (10)	scaffold_1:36265264-36265793(+) (10)	NA	NA	NA	AT5G55580.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g39430.1	"mTERF family protein, expressed"	Medtr5g102090.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140.1.S1_at	A	A1TS	POPTR_0015s09990	POPTR_0015s09990 (11)	scaffold_15:11050658-11053489(-) (11)	NA	P95649	Protein CbbY	AT3G48420.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g36750.1	"cbbY, putative, expressed"	AC235753_15.1	"HAD-superfamily hydrolase subfamily IA, variant 3 AC235753.1 88087-84841 F EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.1400.1.S1_at	A	A1TS	POPTR_0019s11670	POPTR_0019s11670 (11)	scaffold_19:12920113-12920544(+) (11)	NA	Q3E7Q9	Probable glycosyltransferase At5g25310	AT1G34270.1	Exostosin family protein 	LOC_Os04g57510.1	"exostosin family domain containing protein, expressed"	Medtr4g107310.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.140006.1.A1_at	A	A1TS	POPTR_0004s03350	POPTR_0004s03350 (11)	scaffold_4:2287591-2288267(+) (11)	NA	Q8VYN2	Vesicle-associated protein 4-2	AT4G21450.1	PapD-like superfamily protein 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.140013.1.A1_at	A	A1TS	POPTR_0001s27400	POPTR_0001s27400 (11)	scaffold_1:26296825-26297250(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14002.1.S1_at	A	A1TS	POPTR_0003s02980	POPTR_0003s02980 (10)	scaffold_3:3201539-3202012(-) (10)	NA	Q9C889	PRA1 family protein F2	AT1G55190.1	PRA1 (Prenylated rab acceptor) family protein 	LOC_Os05g11120.1	"prenylated rab acceptor, putative, expressed"	Medtr2g121490.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140042.1.A1_a_at	A	A1MS	POPTR_0006s24530	POPTR_0006s24530 (11)	scaffold_6:23116472-23116569(+) (11)//scaffold_6:23116771-23117157(+) (11)	NA	Q66GS2	"Probable beta-1,3-galactosyltransferase 12"	AT2G26100.1	Galactosyltransferase family protein 	LOC_Os06g06280.2	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.140042.1.A1_s_at	A	A2MS	POPTR_0006s24530	POPTR_0006s24530 (11)//POPTR_0018s05200 (10)	scaffold_18:4705787-4706094(+) (10)//scaffold_18:4705932-4706111(+) (9)//scaffold_18:4706073-4706263(+) (9)//scaffold_18:4706225-4706402(+) (9)//scaffold_18:4706367-4706536(+) (9)//scaffold_6:23115594-23116512(+) (11)//scaffold_6:23115777-23116811(+) (11)//scaffold_6:23115919-23117113(+) (11)//scaffold_6:23116062-23116828(+) (9)//scaffold_6:23116205-23116986(+) (9)//scaffold_6:23116348-23117130(+) (9)//scaffold_6:23116491-23117285(+) (9)	NA	Q66GS2	"Probable beta-1,3-galactosyltransferase 12"	AT2G26100.1	Galactosyltransferase family protein 	LOC_Os06g06280.2	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.140057.1.A1_at	A	A1TS	POPTR_0006s08440	POPTR_0006s08440 (9)	scaffold_6:6146118-6146479(+) (9)	NA	Q9LZ56	Dof zinc finger protein DOF5.1	AT5G02460.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os03g60630.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.140062.1.A1_s_at	A	A1TS	POPTR_0002s00960	POPTR_0002s00960 (11)	scaffold_2:461338-461416(-) (11)//scaffold_2:9083592-9083670(+) (11)//scaffold_2:9106005-9106083(+) (11)//scaffold_2:9115487-9115530(+) (9)	NA	Q9HGL2	Uncharacterized calcium-binding protein C800.10c	AT1G20760.1	Calcium-binding EF hand family protein 	LOC_Os03g03830.1	"EF hand family protein, putative, expressed"	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140068.1.S1_at	A	A1TS	POPTR_0006s26750	POPTR_0006s26750 (11)	scaffold_6:24869846-24870062(+) (11)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.2	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.140068.2.S1_at	A	A1TS	POPTR_0018s01490	POPTR_0018s01490 (10)	scaffold_18:1421164-1421814(+) (10)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.2	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.140074.1.A1_at	A	A1TS	POPTR_0016s12600	POPTR_0016s12600 (10)	scaffold_16:12005140-12006013(-) (10)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140080.1.A1_at	A	A1TS	POPTR_0001s30420	POPTR_0001s30420 (11)	scaffold_1:28889572-28890517(+) (11)	NA	Q5SSZ7	Zinc/RING finger protein 3	AT1G49850.1	RING/U-box superfamily protein 	LOC_Os03g10890.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140097.1.A1_a_at	A	A2TS	POPTR_0004s01340	POPTR_0021s00590 (11)//POPTR_0004s01340 (11)	scaffold_21:275123-276385(-) (11)//scaffold_4:725744-726409(-) (11)	NA	Q9SA96	"Arogenate dehydratase/prephenate dehydratase 1, chloroplastic"	AT1G11790.1	arogenate dehydratase 1 	LOC_Os03g17730.1	"P-protein, putative, expressed"	Medtr8g146930.1	Prephenate dehydratase with ACT region 	GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0004664|prephenate dehydratase activity	NA
PtpAffx.140101.1.S1_at	A	A1TS	POPTR_0006s12020	POPTR_0006s12020 (11)	scaffold_6:9192044-9193441(-) (11)	NA	Q9CS00	Uncharacterized protein C19orf29 homolog	AT1G03910.1	"EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). "	LOC_Os03g58590.1	expressed protein	Medtr7g124550.1	"Uncharacterized protein C19orf29 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140123.1.S1_s_at	A	A1TS	POPTR_0008s02510	POPTR_0008s02510 (11)	scaffold_8:1228983-1230766(-) (11)	NA	Q7M3S9	RING finger protein B	AT2G36360.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os03g61950.1	"kelch motif family protein, putative, expressed"	Medtr1g116960.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140123.2.A1_s_at	A	A1TS	POPTR_0008s02510	POPTR_0008s02510 (11)	scaffold_8:1227862-1228774(-) (11)	NA	Q7M3S9	RING finger protein B	AT2G36360.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os03g61950.1	"kelch motif family protein, putative, expressed"	Medtr1g116960.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140138.1.A1_s_at	A	A1TS	POPTR_0008s09970	POPTR_0008s09970 (11)	scaffold_8:6179539-6180172(+) (11)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140138.2.A1_at	A	A1TA	POPTR_0008s09980	POPTR_0008s09980 (9)	scaffold_8:6180421-6180757(+) (10)	NA	NA	NA	AT3G17300.1	unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g37850.1	expressed protein	Medtr2g037030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14014.1.A1_at	A	A1TS	POPTR_0001s13420	POPTR_0001s13420 (11)	scaffold_1:10503566-10503919(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G13160.1	Protein kinase superfamily protein 	LOC_Os02g30900.1	"protein kinase domain containing protein, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14014.2.A1_at	A	A1TS	POPTR_0003s16530	POPTR_0003s16530 (10)	scaffold_3:16111063-16111390(-) (10)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G13160.1	Protein kinase superfamily protein 	LOC_Os02g30900.1	"protein kinase domain containing protein, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.140158.1.A1_at	A	A1TS	POPTR_0005s19250	POPTR_0005s19250 (11)	scaffold_5:17968545-17969029(-) (11)	NA	NA	NA	AT2G22720.2	SPT2 chromatin protein 	LOC_Os11g19130.1	expressed protein	Medtr5g032140.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140164.2.A1_a_at	A	A1TS	POPTR_0008s17840	POPTR_0008s17840 (10)	scaffold_8:11975124-11975516(-) (10)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.140167.1.A1_at	A	A1TS	POPTR_0010s16590	POPTR_0010s16590 (11)	scaffold_10:15503916-15504081(-) (11)	NA	Q9LMX4	Probable inactive purple acid phosphatase 1	AT1G13750.1	Purple acid phosphatases superfamily protein 	LOC_Os12g38750.2	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g073720.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.140178.1.A1_at	A	A1TS	POPTR_0006s15530	POPTR_0006s15530 (11)	scaffold_6:12975418-12975753(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140180.1.A1_at	A	A1TS	POPTR_0010s10000	POPTR_0010s10000 (10)	scaffold_10:10587500-10587816(-) (10)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140192.1.A1_at	A	A1TS	POPTR_0007s06560	POPTR_0007s06560 (11)	scaffold_7:4965584-4965698(+) (11)	POPTR_0006s17780 (6)	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140200.1.A1_at	A	A1TS	POPTR_0001s36690	POPTR_0001s36690 (11)	scaffold_1:35387623-35388087(+) (11)	NA	Q12872	"Splicing factor, arginine/serine-rich 8"	AT5G55100.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 	LOC_Os01g50320.1	"surp module family protein, putative, expressed"	Medtr5g100990.1	SWAP/Surp 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.140209.1.A1_s_at	A	A1TS	POPTR_0014s13730	POPTR_0014s13730 (11)	scaffold_14:10074849-10075512(-) (11)	NA	Q9USZ2	Uncharacterized protein C11G11.07	AT1G12930.1	ARM repeat superfamily protein 	LOC_Os11g34120.1	"exportin 1, putative"	Medtr7g099720.1	Exportin-1/Importin-beta-like 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.140217.4.A1_a_at	A	A1TS	POPTR_0002s19380	POPTR_0002s19380 (11)	scaffold_2:15345639-15346326(+) (11)	NA	O04425	Flowering time control protein FCA	AT2G47310.1	flowering time control protein-related / FCA gamma-related 	LOC_Os09g03610.4	"flowering time control protein FCA, putative, expressed"	Medtr8g136920.1	RNA-binding region RNP-1 (RNA recognition motif); WW/Rsp5/WWP 	NA	GO:0003676|nucleic acid binding||GO:0005515|protein binding	NA
PtpAffx.140221.1.A1_at	A	A1TS	POPTR_0016s13340	POPTR_0016s13340 (11)	scaffold_16:12537858-12539255(+) (11)	NA	NA	NA	AT5G01620.2	TRICHOME BIREFRINGENCE-LIKE 35 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr4g011830.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140227.1.A1_s_at	A	A1TS	POPTR_0014s00850	POPTR_0014s00850 (11)	scaffold_14:785755-786084(-) (11)	NA	NA	NA	AT3G49800.1	BSD domain-containing protein 	LOC_Os05g43520.2	"BSD, putative, expressed"	Medtr5g015300.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140238.1.A1_at	A	A1MS	POPTR_0008s07600	POPTR_0008s07600 (10)	scaffold_8:4654704-4659417(+) (10)	NA	Q93V61	Phospholipase A(1) LCAT3	AT3G03310.1	lecithin:cholesterol acyltransferase 3 	LOC_Os09g33820.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr7g090070.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140246.1.A1_at	A	A1MS	POPTR_0008s04950	POPTR_0008s04950 (9)	scaffold_8:2884548-2885284(+) (9)	NA	Q9SFU0	Protein transport protein Sec24-like At3g07100	AT3G07100.1	Sec23/Sec24 protein transport family protein 	LOC_Os04g04020.1	"protein transport protein Sec24-like, putative, expressed"	AC235094_10.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region AC235094.1 49157-53293 E EGN_Mt090430 200"	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.14026.1.S1_s_at	A	A1TS	POPTR_0011s07040	POPTR_0011s07040 (10)	scaffold_11:7799094-7799287(+) (10)	NA	Q8LPK5	Cellulose synthase A catalytic subunit 8 [UDP-forming]	AT4G18780.1	cellulose synthase family protein 	LOC_Os01g54620.1	"CESA4 - cellulose synthase, expressed"	Medtr4g134990.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.14026.2.A1_s_at	A	A1TS	POPTR_0004s05830	POPTR_0004s05830 (11)	scaffold_4:4564481-4564594(-) (11)	NA	Q8LPK5	Cellulose synthase A catalytic subunit 8 [UDP-forming]	AT4G18780.1	cellulose synthase family protein 	LOC_Os01g54620.1	"CESA4 - cellulose synthase, expressed"	Medtr4g134990.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.140261.1.A1_at	A	A1TS	POPTR_0017s07820	POPTR_0017s07820 (10)	scaffold_17:6126755-6127194(+) (10)	NA	Q8RXN0	ABC transporter G family member 11	AT1G17840.1	white-brown complex homolog protein 11 	LOC_Os09g29660.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g120750.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.14027.1.S1_at	A	A1TS	POPTR_0005s00790	POPTR_0005s00790 (10)	scaffold_5:363444-363904(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140285.1.A1_s_at	A	A1TS	POPTR_0155s00210	POPTR_0155s00210 (11)	scaffold_155:3247-3386(-) (11)//scaffold_271:4365-4504(-) (11)	NA	Q9SX68	"50S ribosomal protein L18, chloroplastic"	AT1G48350.1	Ribosomal L18p/L5e family protein 	LOC_Os03g61260.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr2g052360.1	Ribosomal protein L18 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.140294.1.A1_at	A	A1TS	POPTR_0329s00201	POPTR_0329s00201 (11)	scaffold_329:7827-8320(+) (11)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.1403.1.A1_s_at	A	A1MS	POPTR_0005s18510	POPTR_0005s18510 (10)	scaffold_5:16755497-16755919(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g016530.1	"Glycosyl transferase, family 43 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1403.3.S1_at	A	A1TS	POPTR_0010s11810	POPTR_0010s11810 (9)	scaffold_10:11958194-11961361(+) (10)	NA	Q93YP0	Ubiquitin-conjugating enzyme E2 variant 1A	AT1G23260.1	MMS ZWEI homologue 1 	LOC_Os03g50440.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g157390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140307.1.A1_at	A	A1TA	POPTR_0016s01090	POPTR_0016s01090 (10)	scaffold_16:418975-439844(+) (11)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.14032.1.S1_at	A	A1TS	POPTR_0001s41770	POPTR_0001s41770 (10)	scaffold_1:41484876-41485058(+) (10)	NA	P54697	Myosin-J heavy chain	AT5G54280.2	myosin 2 	LOC_Os07g37560.1	"myosin-Vb, putative, expressed"	Medtr2g095370.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.140354.1.A1_at	A	A1TS	POPTR_0016s02330	POPTR_0016s02330 (11)	scaffold_16:1141141-1142781(+) (11)	NA	Q8CCB4	Vacuolar protein sorting-associated protein 53 homolog	AT1G50500.1	Membrane trafficking VPS53 family protein 	LOC_Os01g67880.1	"vacuolar protein sorting-associated protein 53, putative, expressed"	Medtr2g033780.1	"Vps53-like, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140383.2.A1_at	A	A1MS	POPTR_0001s01220	POPTR_0001s01220 (11)	scaffold_1:955970-956477(+) (11)	NA	NA	NA	AT3G45900.1	Ribonuclease P protein subunit P38-related 	LOC_Os03g63660.1	expressed protein	Medtr5g026860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140383.3.A1_a_at	A	A1TS	POPTR_0001s01220	POPTR_0001s01220 (11)	scaffold_1:958752-959143(+) (11)	NA	NA	NA	AT3G45900.1	Ribonuclease P protein subunit P38-related 	LOC_Os03g63660.1	expressed protein	Medtr5g026860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140394.1.A1_at	A	A1TS	POPTR_0019s11220	POPTR_0019s11220 (10)	scaffold_19:12581365-12581884(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr4g121070.1	Cell surface antigen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1404.2.A1_a_at	A	A1TS	POPTR_0010s07540	POPTR_0010s07540 (11)	scaffold_10:8559095-8560808(-) (11)	NA	NA	NA	AT3G24315.1	Sec20 family protein 	LOC_Os02g44111.2	"sec20 domain containing protein, expressed"	Medtr2g034220.1	"ATSEC20, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140400.1.A1_at	A	A1TS	POPTR_0014s11420	POPTR_0014s11420 (11)	scaffold_14:8490640-8490780(-) (11)	NA	Q9FZ24	"Pentatricopeptide repeat-containing protein At1g02370, mitochondrial"	AT1G02370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g25410.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g106520.1	Asparaginase/glutaminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140400.1.A1_s_at	A	A1TS	POPTR_0014s11420	POPTR_0014s11420 (11)	scaffold_14:8490844-8490947(-) (11)	NA	Q9FZ24	"Pentatricopeptide repeat-containing protein At1g02370, mitochondrial"	AT1G02370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g25410.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g106520.1	Asparaginase/glutaminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140411.1.A1_s_at	A	A1TS	POPTR_0010s16890	POPTR_0010s16890 (11)	scaffold_10:15693349-15695335(+) (11)	NA	A7T167	Protein GDAP2 homolog	AT1G69340.1	appr-1-p processing enzyme family protein 	LOC_Os10g30750.1	"appr-1-p processing enzyme family protein, putative, expressed"	Medtr5g046410.1	"Cellular retinaldehyde-binding/triple function, C-terminal; Appr-1-p processing "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140413.1.A1_at	A	A1TS	POPTR_0003s12680	POPTR_0003s12680 (11)	scaffold_3:13199977-13200397(+) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT1G63500.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14042.1.A1_s_at	A	A1TS	POPTR_0010s07410	POPTR_0010s07410 (11)	scaffold_10:8465058-8467275(-) (11)	NA	Q93Y39	DEAD-box ATP-dependent RNA helicase 13	AT3G16840.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g43140.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC146793_7.1	"Helicase, C-terminal; ; AC146793.7 35969-26139 F EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.140422.1.A1_s_at	A	A1TS	POPTR_0010s26190	POPTR_0010s26190 (11)	scaffold_10:21503308-21503645(+) (11)	NA	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog 1	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58130.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140423.1.A1_at	A	A1MS	POPTR_0013s02150	POPTR_0013s02150 (10)	scaffold_13:1291452-1291930(-) (10)	NA	O81635	Kinesin-4	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.140424.1.A1_at	A	A1TS	POPTR_0013s11000	POPTR_0013s11000 (11)	scaffold_13:11682894-11683271(+) (11)	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.2	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140428.1.A1_at	A	A1MS	POPTR_0007s04020	POPTR_0007s04020 (11)	scaffold_7:2403259-2403546(+) (11)	NA	Q9LXD9	Probable pectinesterase/pectinesterase inhibitor 51	AT5G09760.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g65790.1	"pectinesterase, putative, expressed"	Medtr4g142540.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.140430.1.A1_at	A	A1TS	POPTR_0002s14800	POPTR_0002s14800 (11)	scaffold_2:10977446-10977913(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT2G45340.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.140431.1.A1_s_at	A	A1TS	POPTR_0004s04250	POPTR_0004s04250 (11)	scaffold_4:3042156-3042637(-) (11)	NA	Q84JR3	"Pentatricopeptide repeat-containing protein At4g21705, mitochondrial"	AT4G21705.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140447.1.A1_at	A	A1TS	POPTR_0002s16080	POPTR_0002s16080 (11)	scaffold_2:11981265-11981444(+) (11)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47040.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.140448.1.A1_a_at	A	A2TS	POPTR_0005s06380	POPTR_0005s06380 (11)//POPTR_0007s04110 (11)	scaffold_5:4245160-4245627(+) (11)//scaffold_7:2473007-2473459(+) (11)	NA	Q941R4	GDP-mannose transporter	AT2G13650.3	golgi nucleotide sugar transporter 1 	LOC_Os08g01610.1	"DUF250 domain containing protein, putative, expressed"	Medtr3g143330.1	"GDP-mannose transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140448.1.A1_at	A	A1TS	POPTR_0005s06380	POPTR_0005s06380 (11)	scaffold_5:4245286-4245873(+) (11)	NA	Q941R4	GDP-mannose transporter	AT2G13650.3	golgi nucleotide sugar transporter 1 	LOC_Os08g01610.1	"DUF250 domain containing protein, putative, expressed"	Medtr3g143330.1	"GDP-mannose transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140448.2.A1_at	A	A1TS	POPTR_0007s04110	POPTR_0007s04110 (11)	scaffold_7:2473038-2473728(+) (11)	NA	Q941R4	GDP-mannose transporter	AT2G13650.3	golgi nucleotide sugar transporter 1 	LOC_Os08g01610.1	"DUF250 domain containing protein, putative, expressed"	Medtr3g143330.1	"GDP-mannose transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140449.1.S1_s_at	A	A1TS	POPTR_0010s25280	POPTR_0010s25280 (11)	scaffold_10:21032352-21032806(+) (11)	NA	NA	NA	AT5G18440.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink). "	LOC_Os01g59860.1	expressed protein	AC233682_40.1	hypothetical protein AC233682.2 154897-152825 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140460.1.A1_at	A	A1TS	POPTR_0009s08130	POPTR_0009s08130 (11)	scaffold_9:7488456-7488805(+) (11)	NA	Q55DY8	Mitoferrin	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140465.1.A1_at	A	A1MS	POPTR_0004s05460	POPTR_0004s05460 (11)	scaffold_4:4206669-4206711(-) (11)	NA	Q9CAG5	U-box domain-containing protein 7	AT2G27430.1	ARM repeat superfamily protein 	LOC_Os05g49810.1	armadillo/beta-catenin-like repeat containing protein	Medtr3g138130.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140467.1.A1_at	A	A1TS	POPTR_0016s12870	POPTR_0016s12870 (11)	scaffold_16:12225867-12225924(+) (11)	NA	Q08C72	Pre-mRNA-splicing factor CWC22 homolog	AT1G80930.1	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os12g15420.1	"nucampholin, putative, expressed"	Medtr7g112210.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.140477.1.A1_at	A	A1TS	POPTR_0001s07300	POPTR_0001s07300 (10)	scaffold_1:5493838-5494726(+) (10)	NA	O60318	80 kDa MCM3-associated protein	AT3G54380.1	SAC3/GANP/Nin1/mts3/eIF-3 p25 family 	LOC_Os03g22870.1	"SAC3/GANP family protein, putative, expressed"	Medtr8g045330.1	SAC3/GANP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140478.1.A1_at	A	A1TS	POPTR_0012s00490	POPTR_0012s00490 (10)	scaffold_12:20552-20643(-) (10)//scaffold_12:174409-174500(-) (10)//scaffold_12:261620-261711(-) (9)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140479.1.A1_at	A	A1TS	POPTR_0006s26840	POPTR_0006s26840 (11)	scaffold_6:24919764-24920439(+) (11)	NA	Q9ZP41	EG45-like domain containing protein	AT2G18660.1	plant natriuretic peptide A 	LOC_Os09g29690.1	"beta-expansin precursor, putative, expressed"	Medtr6g084060.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140480.1.A1_at	A	A1TS	POPTR_0004s12240	POPTR_0004s12240 (11)	scaffold_4:11311334-11311378(+) (11)	NA	P53536	"Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic"	AT3G29320.1	"Glycosyl transferase, family 35 "	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr6g014750.1	"Glycosyl transferase, family 35 "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
PtpAffx.140498.1.A1_at	A	A1TS	POPTR_0018s01620	POPTR_0018s01620 (11)	scaffold_18:1511602-1511782(-) (11)	NA	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.1405.1.S1_s_at	A	A2TS	POPTR_0012s08780	POPTR_0012s08790 (10)//POPTR_0012s08780 (10)	scaffold_12:9859765-9859798(+) (10)//scaffold_12:9871329-9871362(+) (10)//scaffold_12:9882799-9882832(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1405.1.S1_x_at	A	A1TS	POPTR_0012s08780	POPTR_0012s08780 (11)	scaffold_12:9859813-9860101(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140515.1.A1_at	A	A1TS	POPTR_0010s09560	POPTR_0010s09560 (11)	scaffold_10:10315629-10315965(-) (11)	NA	Q5ZLM0	Parafibromin	AT3G22590.1	PLANT HOMOLOGOUS TO PARAFIBROMIN 	LOC_Os03g46190.2	"parafibromin, putative, expressed"	Medtr5g007100.1	"RNA pol II accessory factor, Cdc73 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140528.1.A1_a_at	A	A1TS	POPTR_0002s08190	POPTR_0002s08190 (11)	scaffold_2:5678921-5679593(-) (11)	NA	Q0IU52	Aspartic proteinase Asp1	AT1G44130.1	Eukaryotic aspartyl protease family protein 	LOC_Os12g07780.2	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr4g024860.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140529.1.A1_s_at	A	A2TS	POPTR_0012s08120	POPTR_0015s08630 (11)//POPTR_0012s08120 (11)	scaffold_12:9164087-9164121(+) (11)//scaffold_15:9948005-9948039(+) (11)	NA	Q84WP5	UPF0497 membrane protein At2g36330	AT2G36330.1	Uncharacterised protein family (UPF0497) 	LOC_Os01g47200.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g113600.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.140535.1.A1_at	A	A1TS	POPTR_0015s02200	POPTR_0015s02200 (10)	scaffold_15:1532306-1534834(-) (10)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.140535.2.A1_at	A	A1TS	POPTR_0012s01560	POPTR_0012s01560 (9)	scaffold_12:1191855-1193343(+) (9)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.140553.1.A1_at	A	A1TS	POPTR_0016s02390	POPTR_0016s02390 (11)	scaffold_16:1176341-1176796(+) (11)	POPTR_0016s02360 (8)	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.140558.1.A1_at	A	A1TS	POPTR_0004s22490	POPTR_0004s22490 (9)	scaffold_4:21372048-21372569(-) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G57620.1	myb domain protein 36 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14056.1.S1_at	A	A1TS	POPTR_0001s35310	POPTR_0001s35310 (11)	scaffold_1:33640749-33640897(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140560.1.A1_at	A	A1MS	POPTR_0007s04020	POPTR_0007s04020 (11)	scaffold_7:2402369-2402858(+) (11)	NA	Q9LXD9	Probable pectinesterase/pectinesterase inhibitor 51	AT5G09760.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g65790.1	"pectinesterase, putative, expressed"	Medtr4g142540.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.140567.1.A1_at	A	A1TS	POPTR_0012s11600	POPTR_0012s11600 (9)	scaffold_12:11958663-11959151(-) (9)	NA	Q9LVU3	YDG domain-containing protein At5g47160	AT5G47160.1	YDG/SRA domain-containing protein 	LOC_Os09g19830.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr5g013560.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140586.1.A1_at	A	A1TS	POPTR_0005s12410	POPTR_0005s12410 (11)	scaffold_5:9166850-9167261(+) (11)	NA	NA	NA	AT4G36600.1	Late embryogenesis abundant (LEA) protein 	NA	NA	Medtr5g020400.1	"late embryogenesis abundant domain-containing protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140586.1.A1_s_at	A	A1TS	POPTR_0005s12410	POPTR_0005s12410 (11)	scaffold_5:9166772-9167183(+) (11)	NA	NA	NA	AT4G36600.1	Late embryogenesis abundant (LEA) protein 	NA	NA	Medtr5g020400.1	"late embryogenesis abundant domain-containing protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140603.1.A1_at	A	A1TS	POPTR_0010s12120	POPTR_0010s12120 (11)	scaffold_10:12199294-12201688(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g49940.1	"integral membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.140618.1.A1_at	A	A1TS	POPTR_0002s07270	POPTR_0002s07270 (11)	scaffold_2:4971639-4971673(+) (11)	NA	NA	NA	AT1G48880.1	TRICHOME BIREFRINGENCE-LIKE 7 	LOC_Os01g65800.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr3g125130.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140618.1.A1_s_at	A	A1TS	POPTR_0002s07270	POPTR_0002s07270 (11)	scaffold_2:4970708-4971921(+) (11)	NA	NA	NA	AT1G48880.1	TRICHOME BIREFRINGENCE-LIKE 7 	LOC_Os01g65800.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr3g125130.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140635.1.A1_at	A	A1TS	POPTR_0018s03710	POPTR_0018s03710 (11)	scaffold_18:3158965-3160097(-) (11)	NA	NA	NA	AT5G10710.1	"INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g21610.1	expressed protein	Medtr3g133360.1	hypothetical protein 	GO:0051301|cell division||GO:0007059|chromosome segregation	GO:0005515|protein binding	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.14065.1.A1_a_at	A	A1TS	POPTR_0002s10290	POPTR_0002s10290 (11)	scaffold_2:7381776-7382286(+) (11)	NA	Q9VDL1	UPF0483 protein CG5412	AT4G24380.1	"INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g37710.1	"serine hydrolase domain containing protein, expressed"	Medtr5g074690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14068.1.S1_s_at	A	A1TS	POPTR_0005s23040	POPTR_0005s23040 (11)	scaffold_5:21873994-21875875(-) (11)	NA	NA	NA	AT4G02830.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os01g63050.1	expressed protein	Medtr1g086470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140681.1.A1_s_at	A	A1TS	POPTR_0009s12330	POPTR_0009s12330 (11)	scaffold_9:10076075-10076131(+) (11)	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.140704.1.A1_s_at	A	A1TS	POPTR_0004s17580	POPTR_0004s17580 (11)	scaffold_4:17723156-17723207(+) (11)	NA	P45434	Translocon-associated protein subunit alpha	AT2G16595.1	"Translocon-associated protein (TRAP), alpha subunit "	LOC_Os06g50154.1	"translocon-associated protein subunit alpha precursor, putative, expressed"	Medtr3g163280.1	"Translocon-associated protein subunit alpha precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140711.1.A1_at	A	A1TS	POPTR_0030s00250	POPTR_0030s00250 (9)	scaffold_30:57955-58482(+) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os01g57410.3	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140716.1.A1_at	A	A1TS	POPTR_0003s21410	POPTR_0003s21410 (11)	scaffold_3:19584799-19585325(+) (11)	NA	Q54BM5	Branchpoint-bridging protein	AT3G32940.1	RNA-binding KH domain-containing protein 	LOC_Os08g01070.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g105450.1	"RNA binding, related "	NA	GO:0003723|RNA binding	NA
PtpAffx.140723.1.A1_at	A	A1TS	POPTR_0001s21820	POPTR_0001s21820 (11)	scaffold_1:20310972-20311915(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140744.1.A1_at	A	A1TS	POPTR_0002s26010	POPTR_0002s26010 (11)	scaffold_2:22996486-22996644(-) (11)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os10g32990.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr7g116690.1	"Leucine-rich repeat, typical subtype "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.140759.1.A1_at	A	A1TS	POPTR_0007s10370	POPTR_0007s10370 (11)	scaffold_7:10300216-10300708(+) (11)	NA	Q9SZT8	"Pentatricopeptide repeat-containing protein At4g37380, chloroplastic"	AT4G37380.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g02280.1	"pentatricopeptide, putative, expressed"	Medtr4g134470.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14077.1.S1_at	A	A1TS	POPTR_0015s09500	POPTR_0015s09500 (11)	scaffold_15:10710126-10710672(+) (11)	NA	NA	NA	AT3G48240.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os11g25780.1	"PB1 domain containing protein, expressed"	Medtr3g114750.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140774.1.A1_at	A	A1TS	POPTR_0002s07900	POPTR_0002s07900 (11)	scaffold_2:5429589-5430077(-) (11)	NA	NA	NA	AT1G21610.2	wound-responsive family protein 	LOC_Os01g66050.1	"wound-responsive family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140781.1.A1_at	A	A1TS	POPTR_0014s13540	POPTR_0014s13540 (11)	scaffold_14:9956315-9956740(-) (11)	NA	Q93WC9	"Adenylate isopentenyltransferase 3, chloroplastic"	AT3G63110.1	isopentenyltransferase 3 	LOC_Os07g11050.1	"IPP transferase, putative, expressed"	Medtr1g140830.1	Isopentenyl transferase-like 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.1408.1.A1_s_at	A	A1TS	POPTR_0010s02830	POPTR_0010s02830 (11)	scaffold_10:3332634-3333019(+) (11)	NA	NA	NA	AT4G02040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14081.1.S1_at	A	A1TS	POPTR_0013s05700	POPTR_0013s05700 (11)	scaffold_13:4105691-4105992(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os05g40980.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140839.1.A1_at	A	A1TS	POPTR_0001s34520	POPTR_0001s34520 (11)	scaffold_1:32655693-32656147(+) (11)	NA	Q8VWJ2	Probable WRKY transcription factor 28	AT4G18170.1	WRKY DNA-binding protein 28 	LOC_Os01g43650.2	"OsWRKY11 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g098600.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.140848.1.A1_at	A	A1TS	POPTR_0013s11570	POPTR_0013s11570 (9)	scaffold_13:12218086-12218413(+) (11)	NA	Q9P4S5	"tRNA nucleotidyltransferase, mitochondrial"	AT1G22660.1	Polynucleotide adenylyltransferase family protein 	LOC_Os12g07350.1	"tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed"	Medtr5g023710.1	Polynucleotide adenylyltransferase region 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0016779|nucleotidyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.140860.1.A1_at	A	A1TS	POPTR_0001s01500	POPTR_0001s01500 (11)	scaffold_1:1116087-1116988(-) (11)	NA	Q6NS09	Transmembrane protein 45B	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os11g40570.3	"plant viral response family protein, putative, expressed"	Medtr5g027370.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140861.1.A1_at	A	A1TS	POPTR_0008s15740	POPTR_0008s15740 (11)	scaffold_8:10495559-10495933(+) (11)	NA	Q9LUH8	Heat stress transcription factor A-6b	AT3G22830.1	heat shock transcription factor  A6B 	LOC_Os07g08140.1	"heat stress transcription factor, putative, expressed"	Medtr3g139780.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.140872.1.A1_at	A	A1TS	POPTR_0011s15660	POPTR_0011s15660 (11)	scaffold_11:17752005-17752402(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.140882.1.A1_at	A	A2MS	POPTR_0001s14610	POPTR_0001s14610 (10)//POPTR_0001s14600 (9)	scaffold_1:11449260-11460042(+) (10)//scaffold_1:11458762-11460108(+) (9)	NA	P0C8Y0	Camelliol C synthase	AT1G78955.1	camelliol C synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.140884.1.A1_at	A	A1MS	POPTR_0016s11020	POPTR_0016s11020 (11)	scaffold_16:9459829-9460613(-) (11)	NA	NA	NA	AT2G36580.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140884.1.A1_s_at	A	A1MS	POPTR_0016s11020	POPTR_0016s11020 (10)	scaffold_16:9459895-9460597(-) (10)	NA	NA	NA	AT2G36580.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140888.1.A1_s_at	A	A1TS	POPTR_0003s11810	POPTR_0003s11810 (11)	scaffold_3:12573984-12574639(+) (11)	NA	O23976	7-ethoxycoumarin O-deethylase	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.140895.1.A1_at	A	A1TS	POPTR_0008s20710	POPTR_0008s20710 (11)	scaffold_8:14615737-14616158(+) (11)	NA	NA	NA	AT3G06130.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.140896.1.A1_s_at	A	A1TS	POPTR_0004s11800	POPTR_0004s11800 (11)	scaffold_4:10671562-10672374(+) (11)	NA	Q9LLC1	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic"	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	Medtr7g012310.1	Biotin-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140896.2.A1_at	A	A1TS	POPTR_0017s12810	POPTR_0017s12810 (11)	scaffold_17:12994238-12994274(+) (11)	NA	Q9LLC1	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic"	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	AC231342_10.1	Biotin-binding site AC231342.3 52802-49143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140905.1.A1_at	A	A1TS	POPTR_0014s00780	POPTR_0014s00780 (9)	scaffold_14:745020-745462(+) (9)	NA	NA	NA	AT2G22840.1	growth-regulating factor 1 	LOC_Os03g51970.1	"growth-regulating factor, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.140926.1.S1_at	A	A1TS	POPTR_0017s12340	POPTR_0017s12340 (11)	scaffold_17:12532123-12532811(+) (11)	NA	NA	NA	AT5G39530.1	Protein of unknown function (DUF1997) 	LOC_Os03g07200.2	expressed protein	Medtr6g013340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140928.1.A1_at	A	A1TS	POPTR_0003s15970	POPTR_0003s15970 (11)	scaffold_3:15618364-15618909(+) (11)	NA	Q9FZ87	Indole-3-acetic acid-amido synthetase GH3.17	AT1G28130.1	Auxin-responsive GH3 family protein 	LOC_Os07g47490.2	"OsGH3.11 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14093.1.A1_s_at	A	A1TS	POPTR_0018s10880	POPTR_0018s10880 (11)	scaffold_18:11744050-11744566(-) (11)	NA	NA	NA	AT2G23810.1	tetraspanin8 	LOC_Os09g25760.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.140937.1.A1_at	A	A1MS	POPTR_0017s11710	POPTR_0017s11710 (11)	scaffold_17:11472728-11472828(+) (11)	NA	Q01105	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.140939.1.A1_at	A	A1TA	POPTR_0006s14560	POPTR_0006s14560 (11)	scaffold_6:11896934-11897376(-) (11)	NA	NA	NA	AT3G13960.1	growth-regulating factor 5 	LOC_Os02g47280.2	"growth-regulating factor, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.140955.1.A1_at	A	A1TS	POPTR_0005s20130	POPTR_0005s20130 (11)	scaffold_5:19167762-19168186(-) (11)	NA	NA	NA	AT1G21740.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g35070.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140962.1.A1_at	A	A1TS	POPTR_0012s01530	POPTR_0012s01530 (11)	scaffold_12:1156452-1156977(+) (11)	NA	Q9FGL9	Polypyrimidine tract-binding protein homolog 2	AT5G53180.1	polypyrimidine tract-binding protein 2 	LOC_Os01g43170.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr3g124540.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140965.1.A1_at	A	A1TS	POPTR_0017s04660	POPTR_0017s04660 (11)	scaffold_17:3563544-3563863(-) (11)	NA	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140974.1.A1_at	A	A1TS	POPTR_0001s09730	POPTR_0001s09730 (11)	scaffold_1:7474049-7474539(-) (11)	NA	NA	NA	AT4G23490.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr5g010170.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140976.1.A1_s_at	A	A1TS	POPTR_0012s05590	POPTR_0012s05590 (11)	scaffold_12:5246426-5247071(-) (11)	NA	P41111	Translation initiation factor eIF-2B subunit delta	AT5G38640.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g44310.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.14098.1.A1_s_at	A	A2TS	POPTR_0014s12170	POPTR_0014s12170 (11)//POPTR_0002s20350 (9)	scaffold_14:8999052-8999703(-) (11)//scaffold_2:16371289-16371775(-) (9)	NA	O81416	Endoglucanase 17	AT4G02290.1	glycosyl hydrolase 9B13 	LOC_Os01g21070.1	"endoglucanase, putative, expressed"	Medtr1g108080.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.140988.1.A1_at	A	A1TS	POPTR_0008s05610	POPTR_0008s05610 (11)	scaffold_8:3253994-3254673(-) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT3G55430.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.140999.1.A1_at	A	A4MS	POPTR_0017s06080	POPTR_0017s06080 (11)//POPTR_0017s06120 (11)//POPTR_0322s00200 (11)//POPTR_0017s06100 (9)	scaffold_17:4715621-4715783(+) (11)//scaffold_17:4730073-4739417(+) (11)//scaffold_17:4739326-4739490(+) (9)//scaffold_322:14393-14557(-) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34230.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr5g036700.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141002.1.A1_at	A	A1TS	POPTR_0013s06180	POPTR_0013s06180 (9)	scaffold_13:4571516-4571964(-) (11)	NA	Q6MDI2	Polyribonucleotide nucleotidyltransferase	AT3G03710.1	"polyribonucleotide nucleotidyltransferase, putative "	LOC_Os07g07310.1	"polynucleotide phosphorylase, putative, expressed"	Medtr7g103420.1	Polyribonucleotide nucleotidyltransferase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.141034.1.A1_at	A	A2TS	POPTR_1101s00200	POPTR_1101s00200 (11)//POPTR_0013s14590 (10)	scaffold_1101:837-1098(-) (11)//scaffold_13:14760199-14760460(-) (10)	POPTR_0151s00200 (6)	O64477	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	AT2G19130.1	S-locus lectin protein kinase family protein 	LOC_Os07g36780.1	"S-domain receptor-like protein kinase, putative, expressed"	Medtr2g103160.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.141037.1.A1_at	A	A1TS	POPTR_0003s14090	POPTR_0003s14090 (10)	scaffold_3:14271971-14272621(+) (10)	NA	Q39828	Dynamin-related protein 5A	AT5G42080.1	dynamin-like protein 	LOC_Os05g48240.1	"dynamin family protein, putative, expressed"	Medtr5g009190.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.141039.1.A1_at	A	A1TS	POPTR_0003s01720	POPTR_0003s01720 (11)	scaffold_3:1571423-1571496(-) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT5G64530.1	xylem NAC domain 1 	LOC_Os04g35660.1	"no apical meristem protein, putative, expressed"	Medtr4g142900.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.141039.1.A1_s_at	A	A1TS	POPTR_0003s01720	POPTR_0003s01720 (11)	scaffold_3:1571530-1571847(-) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT5G64530.1	xylem NAC domain 1 	LOC_Os04g35660.1	"no apical meristem protein, putative, expressed"	Medtr4g142900.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.141056.1.A1_at	A	A1TA	POPTR_0008s11480	POPTR_0008s11480 (11)	scaffold_8:7289441-7289959(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G25700.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g48330.1	"aspartyl protease family protein, putative, expressed"	Medtr5g098350.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141077.1.A1_at	A	A1TS	POPTR_0016s04010	POPTR_0016s04010 (11)	scaffold_16:2249809-2250083(-) (11)	NA	P93002	Regulatory protein NPR1	AT2G41370.1	Ankyrin repeat family protein / BTB/POZ domain-containing protein 	LOC_Os01g72020.1	"BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr7g107020.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.141081.1.A1_at	A	A1MS	POPTR_0013s03080	POPTR_0013s03080 (11)	scaffold_13:1875204-1875610(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.141083.1.A1_at	A	A1TS	POPTR_0007s13750	POPTR_0007s13750 (9)	scaffold_7:13797006-13797564(-) (9)	NA	Q20035	Uncharacterized membrane protein F35D11.3	AT4G36210.3	Protein of unknown function (DUF726) 	LOC_Os03g02170.2	"transmembrane and coiled-coil domain-containing protein 4, putative, expressed"	Medtr5g021350.1	Protein of unknown function DUF726 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141088.1.A1_at	A	A1TS	POPTR_0010s13250	POPTR_0010s13250 (9)	scaffold_10:13116396-13116751(-) (9)	NA	NA	NA	AT1G68350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141099.1.A1_at	A	A1TS	POPTR_0009s10630	POPTR_0009s10630 (11)	scaffold_9:9092607-9092776(-) (11)	NA	NA	NA	AT2G15695.1	"Protein of unknown function DUF829, transmembrane 53 "	LOC_Os11g40070.1	expressed protein	Medtr4g129420.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141102.1.A1_at	A	A1TS	POPTR_0013s10240	POPTR_0013s10240 (11)	scaffold_13:10259820-10260060(-) (11)	NA	NA	NA	AT1G33800.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141117.1.A1_at	A	A1TS	POPTR_0015s11920	POPTR_0015s11920 (11)	scaffold_15:12414077-12414552(+) (11)//scaffold_15:15071935-15072402(+) (10)//scaffold_88:76926-77402(+) (9)	POPTR_0015s15900 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141124.1.A1_at	A	A1TA	POPTR_0001s35030	POPTR_0001s35030 (10)	scaffold_1:33297745-33298070(+) (10)	NA	Q9LYK2	High affinity nitrate transporter 2.7	AT5G14570.1	high affinity nitrate transporter 2.7 	LOC_Os01g50820.1	"transporter, major facilitator family, putative, expressed"	AC233663_16.1	"High affinity nitrate transporter, putative AC233663.2 118942-120870 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141124.2.S1_s_at	A	A1TS	POPTR_0001s35030	POPTR_0001s35030 (11)	scaffold_1:33295133-33297744(-) (11)	NA	Q9LYK2	High affinity nitrate transporter 2.7	AT5G14570.1	high affinity nitrate transporter 2.7 	LOC_Os01g50820.1	"transporter, major facilitator family, putative, expressed"	AC233663_16.1	"High affinity nitrate transporter, putative AC233663.2 118942-120870 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141124.3.S1_a_at	A	A1TS	POPTR_0001s38640	POPTR_0001s38640 (11)	scaffold_1:37824367-37824576(-) (11)	NA	Q32P51	Heterogeneous nuclear ribonucleoprotein A1-like 2	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g42820.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.141139.1.A1_at	A	A1TS	POPTR_0016s10130	POPTR_0016s10130 (11)	scaffold_16:8307945-8308380(+) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G02010.1	RHO guanyl-nucleotide exchange factor 7 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.141142.1.A1_at	A	A1TS	POPTR_0015s13880	POPTR_0015s13880 (10)	scaffold_15:13635124-13635473(+) (11)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.141148.1.A1_at	A	A1MS	POPTR_0008s15640	POPTR_0008s15640 (9)	scaffold_8:10408475-10408559(-) (9)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.1	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.141148.1.A1_s_at	A	A2TS	POPTR_0008s15640	POPTR_0008s15640 (11)//POPTR_0010s09280 (11)	scaffold_10:10153471-10154499(+) (11)//scaffold_8:10408653-10409824(-) (11)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.1	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.141159.1.A1_at	A	A1TS	POPTR_0008s22790	POPTR_0008s22790 (10)	scaffold_8:17575951-17576432(+) (10)	NA	Q6AXZ3	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	AT5G18580.1	tonneau 2 (TON2) 	LOC_Os05g05710.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed"	Medtr8g139320.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14116.1.S1_at	A	A1TS	POPTR_0002s20480	POPTR_0002s20480 (11)	scaffold_2:16540502-16540840(-) (11)	NA	P32292	Indole-3-acetic acid-induced protein ARG2	AT4G02380.1	senescence-associated gene 21 	NA	NA	Medtr1g108120.1	Late embryogenesis abundant protein 3 	GO:0006950|response to stress	NA	NA
PtpAffx.141171.1.A1_s_at	A	A1TS	POPTR_0019s07530	POPTR_0019s07530 (11)	scaffold_19:8559020-8559169(-) (11)	NA	Q7X996	CBL-interacting protein kinase 2	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.141179.1.A1_at	A	A1MS	POPTR_0010s04880	POPTR_0010s04880 (11)	scaffold_10:6067079-6067446(+) (11)	NA	NA	NA	AT1G69980.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g38750.1	expressed protein	Medtr5g038130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141192.1.S1_at	A	A1TS	POPTR_0002s06770	POPTR_0002s06770 (11)	scaffold_2:4544727-4544840(-) (11)	NA	Q54IL5	UDP-sugar-dependent glycosyltransferase 52	AT1G43620.3	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64750.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr1g125050.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.141194.1.S1_at	A	A1TS	POPTR_0001s36800	POPTR_0001s36800 (11)	scaffold_1:35530772-35531770(+) (11)	NA	NA	NA	AT2G34680.1	Outer arm dynein light chain 1 protein 	LOC_Os07g05470.1	"AIR9 protein, putative, expressed"	Medtr2g055450.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.141199.1.A1_at	A	A1TS	POPTR_0015s13450	POPTR_0015s13450 (11)	scaffold_15:13399813-13400044(+) (11)	NA	Q32LJ2	ADP-ribosylation factor-related protein 1	AT5G52210.2	GTP-binding protein 1 	LOC_Os03g27450.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g035450.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.141202.1.A1_at	A	A1TS	POPTR_0001s26830	POPTR_0001s26830 (10)	scaffold_1:25833779-25835940(+) (10)	NA	A5PK19	Methyltransferase-like protein 13	AT3G60910.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g46340.1	"methyltransferase, putative, expressed"	Medtr4g089760.1	"Putative methyltransferase KIAA0859 homolog, "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.141209.1.A1_at	A	A1TS	POPTR_0006s13270	POPTR_0006s13270 (11)	scaffold_6:10514543-10514804(-) (11)	NA	NA	NA	AT3G09730.1	unknown protein; Has 1171 Blast hits to 1097 proteins in 212 species: Archae - 14; Bacteria - 83; Metazoa - 583; Fungi - 105; Plants - 149; Viruses - 14; Other Eukaryotes - 223 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141212.1.A1_s_at	A	A1TS	POPTR_0030s00300	POPTR_0030s00300 (11)	scaffold_30:79522-80132(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.141217.1.A1_at	A	A1MS	POPTR_0018s09060	POPTR_0018s09060 (10)	scaffold_18:9938501-9938951(-) (10)	NA	Q8S3D1	Transcription factor bHLH68	AT4G29100.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g14010.1	"ethylene-responsive protein related, putative, expressed"	AC233783_18.2	Helix-loop-helix DNA-binding AC233783.1 82495-77637 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141227.1.A1_s_at	A	A1TS	POPTR_0014s18930	POPTR_0014s18930 (11)	scaffold_14:16518104-16519720(-) (11)	NA	Q6DCY9	HAUS augmin-like complex subunit 3	AT5G48520.1	unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; Bacteria - 41; Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). 	LOC_Os06g08730.1	expressed protein	Medtr1g046340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14123.1.A1_s_at	A	A1TS	POPTR_0011s11260	POPTR_0011s11260 (11)	scaffold_11:13988228-13988354(+) (11)	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.14123.2.A1_s_at	A	A1TS	POPTR_0011s11260	POPTR_0011s11260 (10)	scaffold_11:13984233-13987878(+) (10)	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.141260.1.S1_x_at	A	A1TS	POPTR_0013s14790	POPTR_0013s14790 (9)	scaffold_13:14917191-14917588(-) (9)	POPTR_0013s01570 (6)	Q8LEE9	Fasciclin-like arabinogalactan protein 12	AT5G60490.1	FASCICLIN-like arabinogalactan-protein 12 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141260.2.A1_at	A	A1TS	POPTR_0012s00670	POPTR_0012s00670 (11)	scaffold_12:370033-370491(-) (11)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.141260.4.S1_at	A	A1TA	POPTR_0012s00670	POPTR_0012s00670 (9)	scaffold_12:370479-370627(+) (9)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.141271.1.A1_at	A	A1TS	POPTR_0008s00750	POPTR_0008s00750 (9)	scaffold_8:340333-340786(-) (9)	NA	NA	NA	AT3G21150.1	B-box 32 	NA	NA	Medtr2g103200.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.141278.1.A1_at	A	A1MS	POPTR_0015s11040	POPTR_0015s11040 (10)	scaffold_15:11731173-11731344(+) (10)	NA	O82743	Agamous-like MADS-box protein AGL19	AT4G22950.1	AGAMOUS-like 19 	LOC_Os04g49150.1	"OsMADS17 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.141306.1.S1_at	A	A1TS	POPTR_0005s15770	POPTR_0005s15770 (11)	scaffold_5:12374884-12375155(+) (11)	NA	Q86IB5	General transcription factor IIH subunit 3	AT1G18340.1	basal transcription factor complex subunit-related 	LOC_Os02g03340.4	"RNA polymerase II transcription factor B subunit 4, putative, expressed"	Medtr3g097520.1	Transcription factor Tfb4 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0016251|general RNA polymerase II transcription factor activity	GO:0000439|core TFIIH complex
PtpAffx.141320.1.S1_at	A	A1TS	POPTR_0019s05010	POPTR_0019s05010 (11)	scaffold_19:5232101-5233356(+) (11)	NA	Q5RC72	Casein kinase I isoform delta	AT3G03940.1	Protein kinase family protein 	LOC_Os01g56580.2	"CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g100510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.141342.1.S1_at	A	A1TS	POPTR_0009s12230	POPTR_0009s12230 (11)	scaffold_9:10009398-10010389(-) (11)	NA	Q10137	Sec14 cytosolic factor	AT2G21520.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g04020.1	expressed protein	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141343.1.S1_at	A	A1TS	POPTR_0010s21680	POPTR_0010s21680 (11)	scaffold_10:18870058-18870951(-) (11)	NA	P41891	Protein gar2	AT3G55340.1	phragmoplastin interacting protein 1 	LOC_Os05g02400.1	"RNA recognition motif containing protein, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.141359.1.S1_s_at	A	A1TS	POPTR_0005s18160	POPTR_0005s18160 (11)	scaffold_5:16268463-16268943(-) (11)	NA	O81360	"Zeaxanthin epoxidase, chloroplastic"	AT5G67030.1	zeaxanthin epoxidase (ZEP) (ABA1) 	LOC_Os04g37619.1	"zeaxanthin epoxidase, chloroplast precursor, putative, expressed"	CU571152_22.1	Forkhead-associated CU571152.5 100554-94827 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141421.1.S1_at	A	A1TS	POPTR_0025s00740	POPTR_0025s00740 (10)	scaffold_25:399202-399331(+) (10)	NA	O22060	Sucrose-phosphate synthase 1	AT5G20280.1	sucrose phosphate synthase 1F 	LOC_Os08g20660.2	"sucrose-phosphate synthase, putative, expressed"	Medtr8g121670.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.141421.1.S1_s_at	A	A1TS	POPTR_0025s00740	POPTR_0025s00740 (11)	scaffold_25:399321-400790(+) (11)	POPTR_0006s06300 (6)	O22060	Sucrose-phosphate synthase 1	AT5G20280.1	sucrose phosphate synthase 1F 	LOC_Os08g20660.2	"sucrose-phosphate synthase, putative, expressed"	Medtr8g121670.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.141424.1.S1_at	A	A1TS	POPTR_0003s11220	POPTR_0003s11220 (11)	scaffold_3:12067306-12068164(+) (11)	POPTR_0001s00250 (6)	Q9SU40	Monocopper oxidase-like protein SKU5	AT4G12420.2	Cupredoxin superfamily protein 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.141425.1.S1_at	A	A1TS	POPTR_0014s05920	POPTR_0014s05920 (11)	scaffold_14:4432356-4433624(+) (11)	NA	Q8VYK7	Autophagy-related protein 8f	AT4G16520.2	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14144.1.S1_at	A	A2TS	POPTR_0015s08200	POPTR_0729s00200 (11)//POPTR_0015s08200 (11)	scaffold_15:9463976-9464370(-) (11)//scaffold_729:2485-2879(-) (11)	NA	NA	NA	AT1G19020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g50710.1	expressed protein	Medtr8g125030.1	"UVI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141448.1.S1_s_at	A	A1TS	POPTR_0006s23550	POPTR_0006s23550 (11)	scaffold_6:22266547-22266923(-) (11)	NA	NA	NA	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.6	"smr domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141451.1.S1_s_at	A	A2TS	POPTR_0002s25390	POPTR_0002s25390 (11)//POPTR_0014s18530 (11)	scaffold_14:15799742-15800672(-) (11)//scaffold_2:22463430-22464399(+) (11)	NA	Q9SZD4	26S proteasome regulatory subunit 4 homolog A	AT4G29040.1	regulatory particle AAA-ATPase 2A 	LOC_Os03g18690.1	"26S protease regulatory subunit 4, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.141458.1.S1_s_at	A	A1TS	POPTR_0006s06980	POPTR_0006s06980 (11)	scaffold_6:5029224-5032752(-) (11)	NA	O58107	Probable galactokinase	AT3G10700.1	galacturonic acid kinase 	LOC_Os04g51880.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr4g160950.1	Mevalonate and galactokinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.14146.1.A1_s_at	A	A1TS	POPTR_0001s05690	POPTR_0001s05690 (11)	scaffold_1:4382951-4383190(+) (11)	NA	P25083	"ADP,ATP carrier protein, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141467.1.S1_s_at	A	A1TS	POPTR_0025s00600	POPTR_0025s00600 (11)	scaffold_25:291664-292542(+) (11)	NA	Q9JM76	Actin-related protein 2/3 complex subunit 3	AT1G60430.2	actin-related protein C3 	LOC_Os02g14000.2	"actin-related protein 2/3 complex subunit 3, putative, expressed"	Medtr8g121950.1	"ARP2/3 complex, 21 kDa p21-Arc subunit "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.141473.1.S1_s_at	A	A2TS	POPTR_0001s01790	POPTR_0001s01790 (11)//POPTR_0003s09680 (11)	scaffold_1:1308140-1309893(-) (11)//scaffold_3:10943025-10944658(+) (11)	NA	Q9UT88	Probable phosphomevalonate kinase	AT1G31910.1	GHMP kinase family protein 	LOC_Os03g14830.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr3g124290.1	Phosphomevalonate kinase Erg8; GHMP kinase; ; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.141519.1.S1_at	A	A1TS	POPTR_0005s06050	POPTR_0005s06050 (11)	scaffold_5:3975230-3976938(-) (11)	POPTR_0007s03850 (8)	Q9FMJ0	Phosphatidylinositol 4-kinase beta 1	AT5G64070.1	phosphatidylinositol 4-OH kinase beta1 	LOC_Os11g10420.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g142660.1	"Phosphatidylinositol 3- and 4-kinase, catalytic "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.141537.2.A1_at	A	A1TA	POPTR_0009s01460	POPTR_0009s01460 (10)	scaffold_9:1791101-1791207(+) (10)	NA	Q8T1P1	Uncharacterized protein DDB_G0273453/DDB_G0273565	AT5G60760.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g39870.1	"2-phosphoglycerate kinase-related, putative, expressed"	AC235487_44.1	"2-phosphoglycerate kinase-related, putative AC235487.1 210241-205859 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141538.1.S1_s_at	A	A2TS	POPTR_0005s24500	POPTR_0005s24500 (11)//POPTR_0005s24490 (10)	scaffold_5:23040171-23048238(+) (11)//scaffold_5:23047862-23048345(+) (10)	NA	Q494P0	Probable inorganic phosphate transporter 1-7	AT3G54700.1	phosphate transporter 1;7 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.141555.1.S1_s_at	A	A1TS	POPTR_0005s25070	POPTR_0005s25070 (11)	scaffold_5:23419563-23420636(+) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141558.1.S1_at	A	A1TS	POPTR_0001s17100	POPTR_0001s17100 (10)	scaffold_1:13971237-13971579(+) (10)	NA	Q9FNA9	Phospholipid:diacylglycerol acyltransferase 1	AT5G13640.1	phospholipid:diacylglycerol acyltransferase 	LOC_Os09g27210.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr6g044030.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
PtpAffx.141565.1.S1_at	A	A1TS	POPTR_0365s00200	POPTR_0365s00200 (9)	scaffold_365:5621-6148(+) (9)	POPTR_0005s10250 (8)	O31826	Putative acyl-CoA synthetase yngI	AT2G17650.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr8g088410.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.141567.1.S1_at	A	A1TS	POPTR_0017s03560	POPTR_0017s03560 (10)	scaffold_17:2578050-2578101(-) (10)	NA	Q6ZPJ0	Testis-expressed sequence 2 protein	AT1G17820.1	Putative integral membrane protein conserved region (DUF2404) 	LOC_Os02g58110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141577.1.S1_at	A	A1TS	POPTR_0002s04160	POPTR_0002s04160 (11)	scaffold_2:2594383-2594668(+) (11)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT2G31280.1	conserved peptide upstream open reading frame 7 	LOC_Os01g64560.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141588.1.S1_s_at	A	A1TS	POPTR_0001s05100	POPTR_0001s05100 (9)	scaffold_1:3924310-3925256(+) (9)	NA	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141614.1.S1_at	A	A1TS	POPTR_0014s04050	POPTR_0014s04050 (9)	scaffold_14:3221414-3221706(-) (9)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT5G42610.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141628.1.S1_at	A	A2TS	POPTR_0014s10880	POPTR_0228s00200 (11)//POPTR_0014s10880 (11)	scaffold_14:8122665-8122979(-) (11)//scaffold_228:17367-17681(+) (11)	NA	Q9FWX7	ABC transporter B family member 11	AT1G02520.1	P-glycoprotein 11 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.141636.1.S1_at	A	A1MS	POPTR_0009s02430	POPTR_0009s02430 (10)	scaffold_9:3175295-3175850(-) (11)	NA	Q9FMR3	NAC domain-containing protein 90	AT3G44350.2	NAC domain containing protein 61 	LOC_Os05g37080.1	"No apical meristem protein, putative, expressed"	Medtr2g107600.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.141649.1.S1_at	A	A1TS	POPTR_0006s25360	POPTR_0006s25360 (9)	scaffold_6:23738970-23740265(-) (10)	NA	Q99685	Monoglyceride lipase	AT5G11650.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g10250.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g130390.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141654.1.S1_s_at	A	A1TS	POPTR_0001s47210	POPTR_0001s47210 (11)	scaffold_1:47491271-47491433(+) (11)	NA	P46256	"Fructose-bisphosphate aldolase, cytoplasmic isozyme 1"	AT4G26530.2	Aldolase superfamily protein 	LOC_Os06g40640.3	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g104310.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.141731.1.S1_at	A	A1TS	POPTR_0018s03590	POPTR_0018s03590 (11)	scaffold_18:3103033-3103487(+) (11)	NA	Q8LAW2	F-box protein AFR	AT2G24540.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os07g05880.2	"OsFBK18 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g133280.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141732.1.S1_s_at	A	A1TS	POPTR_0001s02480	POPTR_0001s02480 (11)	scaffold_1:1925131-1925677(+) (11)	NA	NA	NA	AT2G35230.1	VQ motif-containing protein 	NA	NA	Medtr8g078580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141756.1.S1_at	A	A1TS	POPTR_0008s16130	POPTR_0008s16130 (10)	scaffold_8:10777005-10779329(+) (10)	NA	Q9FLG2	Magnesium transporter MRS2-2	AT5G64560.1	magnesium transporter 9 	LOC_Os03g53110.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr1g117730.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14176.1.S1_at	A	A1TS	POPTR_0011s09650	POPTR_0011s09650 (11)	scaffold_11:12045052-12045389(+) (11)	NA	NA	NA	AT5G55850.3	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14176.3.S1_a_at	A	A1MS	POPTR_0011s09650	POPTR_0011s09650 (11)	scaffold_11:12044221-12044301(+) (11)//scaffold_11:12044311-12044391(+) (11)	NA	NA	NA	AT5G55850.3	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14176.3.S1_at	A	A1MS	POPTR_0011s09650	POPTR_0011s09650 (10)	scaffold_11:12044191-12044516(+) (10)	NA	NA	NA	AT5G55850.3	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141763.1.A1_at	A	A1TS	POPTR_0006s21980	POPTR_0006s21980 (9)	scaffold_6:21000259-21000479(+) (9)	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14180.1.S1_at	A	A1TS	POPTR_0002s19830	POPTR_0002s19830 (10)	scaffold_2:15739081-15739403(+) (11)	NA	Q94KD8	Probable beta-D-xylosidase 2	AT1G02640.1	beta-xylosidase 2 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.14183.2.S1_s_at	A	A1TS	POPTR_0001s40250	POPTR_0001s40250 (11)	scaffold_1:39621482-39621676(+) (11)	NA	Q02909	"Phosphoenolpyruvate carboxylase, housekeeping isozyme"	AT3G14940.1	phosphoenolpyruvate carboxylase 3 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.141864.1.S1_at	A	A1TS	POPTR_0004s03320	POPTR_0004s03320 (10)	scaffold_4:2274772-2276185(-) (10)	NA	Q9M0Y6	"Putative PAP-specific phosphatase, mitochondrial"	AT4G05090.1	Inositol monophosphatase family protein 	LOC_Os07g37220.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.14187.1.A1_at	A	A1TS	POPTR_0008s20270	POPTR_0008s20270 (11)	scaffold_8:14038872-14039291(-) (11)	NA	Q4L3J1	Putative TrmH family tRNA/rRNA methyltransferase	AT4G15520.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os05g04940.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr8g140030.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.14188.1.A1_at	A	A1TS	POPTR_0014s12590	POPTR_0014s12590 (11)	scaffold_14:9272970-9275280(-) (11)	NA	Q39129	"Thiosulfate sulfurtransferase, chloroplastic"	AT2G21045.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os02g01220.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr2g021410.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141946.1.S1_s_at	A	A1TS	POPTR_0007s05200	POPTR_0007s05200 (11)	scaffold_7:3351052-3353627(+) (11)	NA	Q7T3H7	Mediator of RNA polymerase II transcription subunit 18	AT2G22370.1	unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g10050.1	expressed protein	Medtr5g047410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14196.1.S1_s_at	A	A1TS	POPTR_0019s11110	POPTR_0019s11110 (11)	scaffold_19:12506862-12507018(+) (11)	NA	NA	NA	AT1G72020.1	unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g35300.1	"SLL1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14196.1.S1_x_at	A	A1TS	POPTR_0019s11110	POPTR_0019s11110 (10)	scaffold_19:12506862-12507106(+) (10)	NA	NA	NA	AT1G72020.1	unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g35300.1	"SLL1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141964.1.S1_s_at	A	A1TS	POPTR_0002s10440	POPTR_0002s10440 (11)	scaffold_2:7529776-7530026(-) (11)	NA	NA	NA	AT5G49710.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g54080.2	expressed protein	Medtr5g074990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141980.1.S1_at	A	A1TS	POPTR_0008s07000	POPTR_0008s07000 (11)	scaffold_8:4238155-4238769(+) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr3g094070.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141994.1.S1_at	A	A1TS	POPTR_0013s11380	POPTR_0013s11380 (11)	scaffold_13:12055055-12055463(-) (11)	NA	Q42538	Serine acetyltransferase 5	AT5G56760.1	serine acetyltransferase 1;1 	LOC_Os05g45710.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g103050.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
PtpAffx.142.1.S1_s_at	A	A2TS	POPTR_0001s45750	POPTR_0001s45750 (11)//POPTR_0011s15180 (11)	scaffold_1:46292683-46292737(+) (11)//scaffold_11:17313703-17313757(-) (11)	NA	P49793	Nuclear pore complex protein Nup98	AT1G10390.2	Nucleoporin autopeptidase 	LOC_Os12g06890.1	"OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed"	Medtr5g105600.1	"Peptidase S59, nucleoporin "	GO:0006810|transport	NA	GO:0005643|nuclear pore
PtpAffx.1420.1.A1_s_at	A	A1TS	POPTR_0002s04410	POPTR_0002s04410 (11)	scaffold_2:2762033-2762448(-) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.1420.1.A1_x_at	A	A1TS	POPTR_0002s04410	POPTR_0002s04410 (11)	scaffold_2:2762046-2762466(-) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.1420.5.A1_a_at	A	A1TS	POPTR_0015s07560	POPTR_0015s07560 (11)	scaffold_15:8846870-8846948(+) (11)	NA	NA	NA	AT1G18850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g02170.2	expressed protein	Medtr3g113570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1420.5.A1_at	A	A1TS	POPTR_0015s07560	POPTR_0015s07560 (11)	scaffold_15:8846628-8847098(+) (11)	NA	NA	NA	AT1G18850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g02170.2	expressed protein	Medtr3g113570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1420.6.A1_at	A	A1TS	POPTR_0005s26990	POPTR_0005s26990 (11)	scaffold_5:24800961-24800997(+) (11)	NA	NA	NA	AT1G76200.1	unknown protein; Has 96 Blast hits to 96 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 47; Plants - 38; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os05g03150.1	expressed protein	Medtr4g100950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142009.1.S1_at	A	A1MS	POPTR_0006s03140	POPTR_0006s03140 (11)	scaffold_6:1988220-1988464(+) (11)	POPTR_0006s03130 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142075.1.S1_at	A	A1TS	POPTR_0007s00760	POPTR_0007s00760 (9)	scaffold_7:373614-381309(-) (9)	POPTR_0007s00740 (8)	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g137110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14209.1.A1_at	A	A1MS	POPTR_0015s03740	POPTR_0015s03740 (11)	scaffold_15:3565173-3565583(-) (11)	NA	NA	NA	AT1G48840.1	Plant protein of unknown function (DUF639) 	LOC_Os10g03830.1	expressed protein	Medtr6g028160.2	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142106.2.S1_a_at	A	A1TS	POPTR_0014s12890	POPTR_0014s12890 (11)	scaffold_14:9499714-9499936(+) (11)	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G62970.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os12g35320.1	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr2g025150.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.142106.3.S1_at	A	A1MS	POPTR_0014s12890	POPTR_0014s12890 (11)	scaffold_14:9498670-9499967(+) (11)	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G62970.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os12g35320.1	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr2g025150.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.142161.1.S1_s_at	A	A2TS	POPTR_0008s08130	POPTR_0008s08130 (11)//POPTR_0010s18130 (11)	scaffold_10:16492042-16493382(+) (11)//scaffold_8:5065599-5066980(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT1G79430.2	Homeodomain-like superfamily protein 	LOC_Os02g07770.1	"Myb transcription factor, putative"	Medtr2g107820.1	"Peptidase M22, glycoprotease; Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142163.1.S1_s_at	A	A1TS	POPTR_0011s16450	POPTR_0011s16450 (11)	scaffold_11:18361971-18363277(-) (11)	NA	NA	NA	AT2G34780.2	maternal effect embryo arrest 22 	LOC_Os01g56290.1	expressed protein	AC147501_20.1	hypothetical protein AC147501.9 80184-71093 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.142171.1.S1_s_at	A	A1TS	POPTR_0005s09700	POPTR_0005s09700 (11)	scaffold_5:6785992-6786200(-) (11)	NA	Q8T2I8	Serine/threonine-protein kinase sepA	AT3G13530.1	mitogen-activated protein kinase kinase kinase 7 	LOC_Os04g56530.1	"STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g100710.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14222.1.A1_at	A	A1TS	POPTR_0006s25290	POPTR_0006s25290 (11)	scaffold_6:23696361-23696808(-) (11)	NA	P40235	Casein kinase I homolog hhp1	AT2G25760.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g008170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.142260.1.S1_at	A	A1MS	POPTR_0019s13210	POPTR_0019s13210 (10)	scaffold_19:14169220-14169427(+) (10)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142301.1.S1_s_at	A	A1TS	POPTR_0010s23350	POPTR_0010s23350 (11)	scaffold_10:19963676-19964565(+) (11)	NA	Q9SS48	"Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial"	AT3G10370.1	FAD-dependent oxidoreductase family protein 	LOC_Os04g14790.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr1g068510.1	FAD-dependent glycerol-3-phosphate dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.142310.1.S1_at	A	A1TS	POPTR_0002s20120	POPTR_0002s20120 (11)	scaffold_2:16069111-16069490(+) (11)	NA	Q8VYF4	Probable galacturonosyltransferase-like 7	AT3G62660.1	galacturonosyltransferase-like 7 	LOC_Os03g18890.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g132630.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.142314.1.S1_at	A	A1TS	POPTR_0001s43080	POPTR_0001s43080 (9)	scaffold_1:43169031-43169484(+) (9)	NA	O65351	Subtilisin-like protease	AT4G20430.1	Subtilase family protein 	LOC_Os01g56320.1	"OsSub4 - Putative Subtilisin homologue, expressed"	Medtr4g137790.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA; "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.142326.1.S1_at	A	A1TS	POPTR_0015s12700	POPTR_0015s12700 (11)	scaffold_15:12929290-12929834(-) (11)	NA	O31826	Putative acyl-CoA synthetase yngI	AT5G16370.1	acyl activating enzyme 5 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084090.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.142329.1.S1_s_at	A	A1TS	POPTR_0006s02200	POPTR_0006s02200 (11)	scaffold_6:1446292-1446725(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
PtpAffx.142349.1.S1_at	A	A1TS	POPTR_0014s10960	POPTR_0014s10960 (11)	scaffold_14:8183749-8184571(+) (11)	NA	Q9S7P5	Squamosa promoter-binding-like protein 12	AT3G60030.1	squamosa promoter-binding protein-like 12 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.142358.1.S1_at	A	A1TS	POPTR_0017s04880	POPTR_0017s04880 (11)	scaffold_17:3752516-3752558(+) (11)	NA	O22870	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplastic"	AT2G43560.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g42850.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g092670.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.142364.1.S1_at	A	A1TS	POPTR_0006s19830	POPTR_0006s19830 (10)	scaffold_6:18847489-18849399(+) (10)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G57970.2	DNA glycosylase superfamily protein 	LOC_Os04g42290.1	"methyladenine glycosylase, putative, expressed"	Medtr8g145370.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.142367.1.S1_at	A	A1TS	POPTR_0018s06120	POPTR_0018s06120 (10)	scaffold_18:5764415-5764967(-) (10)	NA	NA	NA	AT3G24490.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os01g52090.2	"transcription factor like protein, putative, expressed"	AC234703_9.1	"Myb, DNA-binding AC234703.1 59278-57295 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14238.5.A1_a_at	A	A1TS	POPTR_0006s05040	POPTR_0006s05040 (11)	scaffold_6:3505610-3506091(-) (11)	NA	NA	NA	AT1G01170.2	Protein of unknown function (DUF1138) 	LOC_Os06g02420.1	"ATOZI1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142385.1.S1_at	A	A1TS	POPTR_0012s02870	POPTR_0012s02870 (11)	scaffold_12:2318014-2318294(-) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT3G49430.2	SER/ARG-rich protein 34A 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr3g122850.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.142385.1.S1_s_at	A	A1MS	POPTR_0012s02870	POPTR_0012s02870 (11)	scaffold_12:2318064-2319262(-) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT3G49430.2	SER/ARG-rich protein 34A 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr3g122850.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.142388.1.S1_at	A	A1TS	POPTR_0003s17440	POPTR_0003s17440 (11)	scaffold_3:16775051-16778185(+) (11)	NA	Q54LQ6	Probable inosine triphosphate pyrophosphatase	AT4G13720.1	Inosine triphosphate pyrophosphatase family protein 	LOC_Os10g31940.1	"inosine triphosphate pyrophosphatase, putative, expressed"	AC235749_26.1	Ham1-like protein AC235749.1 82849-86143 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.142391.1.S1_at	A	A1TS	POPTR_0005s05440	POPTR_0005s05440 (11)	scaffold_5:3602905-3603267(+) (11)	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142399.1.S1_s_at	A	A1TS	POPTR_0015s04900	POPTR_0015s04900 (11)	scaffold_15:5136128-5136647(+) (11)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT3G17850.1	Protein kinase superfamily protein 	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14241.1.A1_at	A	A1TS	POPTR_0016s02510	POPTR_0016s02510 (11)	scaffold_16:1241079-1241576(+) (11)	NA	Q9FYE1	Metacaspase-9	AT5G04200.1	metacaspase 9 	LOC_Os11g04010.1	"ICE-like protease p20 domain containing protein, putative, expressed"	Medtr7g104790.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.142418.2.A1_at	A	A1MS	POPTR_0005s20600	POPTR_0005s20600 (11)	scaffold_5:19640311-19640411(+) (11)	NA	Q8CFV9	Riboflavin kinase	AT4G21470.1	riboflavin kinase/FMN hydrolase 	LOC_Os10g32730.1	"haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed"	Medtr4g125160.1	"HAD-superfamily hydrolase subfamily IA, variant 3; Epoxide hydrolase N-terminal domain-like phosphatase "	GO:0009231|riboflavin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0008531|riboflavin kinase activity	NA
PtpAffx.142453.1.A1_at	A	A1TS	POPTR_0015s06780	POPTR_0015s06780 (11)	scaffold_15:7817856-7818409(+) (11)	NA	NA	NA	AT5G20170.1	RNA polymerase II transcription mediators 	LOC_Os12g44140.1	expressed protein	Medtr8g119840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142466.1.A1_s_at	A	A1TS	POPTR_0018s13780	POPTR_0018s13780 (11)	scaffold_18:14054945-14055462(+) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT3G23750.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr3g104610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.14248.1.S1_at	A	A1TS	POPTR_0013s13240	POPTR_0013s13240 (11)	scaffold_13:13782584-13782923(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT4G12490.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46810.1	"LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106200.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142561.1.A1_at	A	A1TA	POPTR_0005s25800	POPTR_0005s25800 (11)	scaffold_5:23980641-23981152(+) (11)	NA	P93024	Auxin response factor 5	AT1G19850.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os04g56850.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.142582.1.A1_at	A	A1TS	POPTR_0019s14200	POPTR_0019s14200 (11)	scaffold_19:14942729-14943286(-) (11)	NA	NA	NA	AT4G03260.2	Outer arm dynein light chain 1 protein 	LOC_Os07g01550.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.142585.1.A1_at	A	A1TA	POPTR_0007s12130	POPTR_0007s12130 (11)	scaffold_7:12456693-12457250(-) (11)	NA	O64827	Histone-lysine N-methyltransferase SUVR5	AT2G23740.2	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding 	LOC_Os02g47900.1	"SET domain protein SDG117, putative, expressed"	Medtr5g018800.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.142603.1.A1_s_at	A	A1TS	POPTR_0013s07050	POPTR_0013s07050 (11)	scaffold_13:5755001-5755146(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os10g17260.1	"cytochrome P450, putative, expressed"	Medtr3g037120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.142664.1.A1_at	A	A1TS	POPTR_0010s20060	POPTR_0010s20060 (11)	scaffold_10:17809982-17810486(-) (11)	NA	O20252	"Sedoheptulose-1,7-bisphosphatase, chloroplastic"	AT3G55800.1	sedoheptulose-bisphosphatase 	LOC_Os04g16680.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr3g093130.1	"Inositol phosphatase/fructose-1,6-bisphosphatase; Glycoside hydrolase, family 5 "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.142669.1.S1_s_at	A	A1TS	POPTR_0013s06280	POPTR_0013s06280 (11)	scaffold_13:4697831-4698862(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142674.1.S1_at	A	A1TS	POPTR_0001s41040	POPTR_0001s41040 (11)	scaffold_1:40685075-40688326(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.142690.2.S1_s_at	A	A2TS	POPTR_0013s08240	POPTR_0013s08240 (11)//POPTR_0019s08260 (11)	scaffold_13:7285151-7285378(+) (11)//scaffold_19:9741197-9741428(-) (11)	NA	Q9CYI4	Putative RNA-binding protein Luc7-like 1	AT3G03340.1	LUC7 related protein 	LOC_Os03g62640.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142717.1.S1_at	A	A1TS	POPTR_0008s20980	POPTR_0008s20980 (11)	scaffold_8:15022375-15024408(-) (11)	NA	NA	NA	AT3G21465.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15640.1); Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g47201.1	"adenyl cyclase, putative, expressed"	Medtr3g092800.1	"adenyl cyclase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142752.1.S1_at	A	A1TS	POPTR_0003s06650	POPTR_0003s06650 (11)	scaffold_3:8162759-8163093(-) (11)	NA	O54922	Exocyst complex component 7	AT1G72470.1	exocyst subunit exo70 family protein D1 	LOC_Os08g35470.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr8g109240.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.142779.2.S1_at	A	A1TS	POPTR_0001s13880	POPTR_0001s13880 (11)	scaffold_1:10941971-10943896(+) (11)	NA	Q8GZ43	RanBP2-type zinc finger protein At1g67325	AT1G67325.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os08g41010.2	"zinc finger family protein, putative, expressed"	Medtr3g103960.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.14280.1.S1_a_at	A	A1TS	POPTR_0009s13670	POPTR_0009s13670 (11)	scaffold_9:10856710-10857516(+) (11)	NA	Q6WWW4	E3 ubiquitin-protein ligase UPL3	AT4G38600.1	HEAT repeat ;HECT-domain (ubiquitin-transferase) 	LOC_Os02g01170.1	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.142804.1.S1_at	A	A1TS	POPTR_0007s01940	POPTR_0007s01940 (11)	scaffold_7:1104096-1104619(+) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G07500.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g15040.2	"FAR1 family protein, expressed"	Medtr2g118460.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142812.1.S1_s_at	A	A1TS	POPTR_0008s09380	POPTR_0008s09380 (11)	scaffold_8:5810558-5811338(+) (11)	NA	Q9FZE0	Beta-glucosidase 40	AT1G26560.1	beta glucosidase 40 	LOC_Os03g11420.1	"Os3bglu6 - beta-glucosidase/beta-fucosidase/beta-galactosidase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.14282.1.S1_at	A	A1TS	POPTR_0004s20980	POPTR_0004s20980 (11)	scaffold_4:20316794-20318151(-) (11)	NA	Q42965	Bifunctional nitrilase/nitrile hydratase NIT4A	AT5G22300.1	nitrilase 4 	LOC_Os02g42350.1	"nitrilase, putative, expressed"	Medtr1g146400.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.142827.1.S1_a_at	A	A3TS	POPTR_0006s28090	POPTR_0006s28090 (11)//POPTR_0018s02670 (11)//POPTR_0018s02680 (11)	scaffold_18:2399227-2399611(-) (11)//scaffold_18:2407268-2407653(-) (11)//scaffold_6:25906935-25907369(-) (11)	NA	Q9SZ53	Probable protein phosphatase 2C 60	AT4G31860.1	Protein phosphatase 2C family protein 	LOC_Os02g08364.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142827.2.S1_at	A	A1TS	POPTR_0006s28090	POPTR_0006s28090 (11)	scaffold_6:25906570-25906998(-) (11)	NA	Q9SZ53	Probable protein phosphatase 2C 60	AT4G31860.1	Protein phosphatase 2C family protein 	LOC_Os02g08364.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142841.1.S1_s_at	A	A1TS	POPTR_0006s21440	POPTR_0006s21440 (11)	scaffold_6:20505594-20506010(+) (11)	NA	NA	NA	AT3G11690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g104580.1	"pollen preferential protein^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142854.1.S1_s_at	A	A1TS	POPTR_0012s02220	POPTR_0012s02220 (11)	scaffold_12:1856629-1856734(+) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14286.2.A1_a_at	A	A1TS	POPTR_0014s11930	POPTR_0014s11930 (11)	scaffold_14:8834268-8834640(+) (11)	NA	NA	NA	AT4G13030.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g19280.1	expressed protein	Medtr7g062150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142865.1.S1_at	A	A1TS	POPTR_0011s11710	POPTR_0011s11710 (10)	scaffold_11:14470949-14471393(-) (10)	NA	O61122	Serine/threonine-protein kinase svkA	AT3G15220.1	Protein kinase superfamily protein 	LOC_Os07g32400.1	"STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.142909.1.S1_s_at	A	A1TS	POPTR_0003s10660	POPTR_0003s10660 (11)	scaffold_3:11568522-11570616(-) (11)	NA	NA	NA	AT4G25170.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os02g44010.2	expressed protein	Medtr7g040860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142932.1.S1_at	A	A1TS	POPTR_0006s05440	POPTR_0006s05440 (11)	scaffold_6:3846023-3846333(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142991.1.S1_at	A	A1TS	POPTR_0014s11850	POPTR_0014s11850 (11)	scaffold_14:8775459-8775835(-) (11)	NA	NA	NA	AT5G38700.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g19070.1	"long cell-linked locus protein, putative, expressed"	Medtr1g107490.1	"long cell-linked locus protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142992.1.S1_at	A	A1TS	POPTR_0008s19690	POPTR_0008s19690 (11)	scaffold_8:13582092-13582175(+) (11)	NA	O04536	Probable galacturonosyltransferase-like 9	AT1G70090.2	glucosyl transferase family 8 	LOC_Os02g50600.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr5g037690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.142992.1.S1_s_at	A	A1TS	POPTR_0008s19690	POPTR_0008s19690 (11)	scaffold_8:13582167-13582427(+) (11)	NA	O04536	Probable galacturonosyltransferase-like 9	AT1G70090.2	glucosyl transferase family 8 	LOC_Os02g50600.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr5g037690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.142994.1.S1_at	A	A1TS	POPTR_0011s17210	POPTR_0011s17210 (11)	scaffold_11:18791489-18791956(-) (11)	NA	NA	NA	AT5G56250.1	hapless 8 	LOC_Os04g39560.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143.1.S1_at	A	A1MS	POPTR_0001s36210	POPTR_0001s36210 (9)	scaffold_1:34721231-34721559(-) (9)	NA	NA	NA	AT3G27330.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os08g02850.1	"zinc finger family protein, putative, expressed"	Medtr2g034480.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143018.1.S1_at	A	A1TS	POPTR_0009s07660	POPTR_0009s07660 (9)	scaffold_9:7107422-7108640(-) (9)	NA	O80873	Uncharacterized protein At1g07170/At2g30000	AT2G30000.1	PHF5-like protein 	LOC_Os05g30410.1	"PHF5-like protein domain containing protein, expressed"	Medtr4g024080.1	Protein of unknown function UPF0123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14302.1.S1_at	A	A1TS	POPTR_0012s08760	POPTR_0012s08760 (11)	scaffold_12:9842171-9842569(+) (11)	NA	O61967	Protein lap1	AT3G11330.1	plant intracellular ras group-related LRR 9 	LOC_Os04g40080.1	"leucine rich repeat containing protein, expressed"	Medtr3g114800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.143031.1.S1_at	A	A1TS	POPTR_0009s14160	POPTR_0009s14160 (10)	scaffold_9:11159847-11160466(-) (10)	NA	Q9LEL6	(RS)-norcoclaurine 6-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr3g105610.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.143041.1.S1_s_at	A	A1TS	POPTR_0012s09940	POPTR_0012s09940 (11)	scaffold_12:10821480-10822072(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os08g41880.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g109230.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.143059.1.A1_at	A	A1TS	POPTR_0015s06250	POPTR_0015s06250 (11)	scaffold_15:6632495-6633502(+) (11)	NA	NA	NA	AT1G48950.1	C3HC zinc finger-like  	LOC_Os01g42080.1	"zinc ion binding protein, putative, expressed"	Medtr8g116510.1	"Zinc finger, C3HC-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1431.2.S1_at	A	A1TS	POPTR_0014s02260	POPTR_0014s02260 (11)	scaffold_14:1914872-1915350(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr5g016440.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14313.1.S1_at	A	A1TS	POPTR_0010s06150	POPTR_0010s06150 (9)	scaffold_10:7579936-7582298(+) (9)	NA	Q9VSH4	Cleavage and polyadenylation specificity factor subunit CG7185	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.143144.1.A1_at	A	A1TS	POPTR_0002s21860	POPTR_0002s21860 (10)	scaffold_2:18558407-18559465(+) (10)	NA	NA	NA	AT1G04960.1	Protein of unknown function (DUF1664) 	LOC_Os09g30478.1	expressed protein	Medtr3g106460.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143162.1.S1_at	A	A1TS	POPTR_0011s09500	POPTR_0011s09500 (10)	scaffold_11:11793495-11794712(+) (10)	NA	Q9FLP0	65-kDa microtubule-associated protein 1	AT5G55230.1	microtubule-associated proteins 65-1 	LOC_Os06g20370.1	"microtubule associated protein, putative, expressed"	Medtr5g101260.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14318.1.A1_a_at	A	A1TS	POPTR_0014s17130	POPTR_0014s17130 (11)	scaffold_14:13289056-13290714(+) (11)	NA	Q5ZLS7	Putative oxidoreductase GLYR1	AT3G25530.1	glyoxylate reductase 1 	LOC_Os02g35500.1	"NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed"	Medtr4g125730.1	2-hydroxy-3-oxopropionate reductase 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.143207.1.A1_at	A	A1TS	POPTR_0012s12380	POPTR_0012s12380 (11)	scaffold_12:12665797-12666311(-) (11)	NA	Q949Q1	Probable galacturonosyltransferase 11	AT1G18580.1	galacturonosyltransferase 11 	LOC_Os03g30000.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g018990.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.143215.1.S1_at	A	A1TS	POPTR_0004s15600	POPTR_0004s15600 (11)	scaffold_4:16207526-16207883(+) (11)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT5G42650.1	allene oxide synthase 	LOC_Os03g55800.1	"cytochrome P450, putative, expressed"	Medtr4g093070.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143216.1.A1_at	A	A1TS	POPTR_0001s45900	POPTR_0001s45900 (11)	scaffold_1:46409482-46409930(+) (11)	NA	Q9SV83	Probable receptor-like protein kinase At4g10390	AT1G33260.2	Protein kinase superfamily protein 	LOC_Os04g45730.1	"protein kinase domain containing protein, expressed"	Medtr4g130010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14324.1.S1_at	A	A1TS	POPTR_0001s10650	POPTR_0001s10650 (11)	scaffold_1:8283025-8283463(-) (11)	POPTR_0003s14030 (6)	NA	NA	AT4G23890.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). "	LOC_Os07g09800.1	expressed protein	Medtr8g034390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14325.2.A1_a_at	A	A1TS	POPTR_0010s12370	POPTR_0010s12370 (11)	scaffold_10:12392490-12393018(-) (11)	NA	Q5SLW9	Chaperone protein dnaJ 1	AT1G71000.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g42190.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g138160.1	"Glycoside hydrolase, family 11; Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.143284.2.A1_at	A	A1TS	POPTR_0008s01090	POPTR_0008s01090 (9)	scaffold_8:513339-513628(+) (9)	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT1G16880.1	uridylyltransferase-related 	LOC_Os08g14440.1	"uridylyltransferase-related, putative, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14329.1.S1_at	A	A1TS	POPTR_0019s02270	POPTR_0019s02270 (9)	scaffold_19:2109773-2110222(+) (9)	NA	Q94A64	F-box protein At5g03970	AT5G03970.1	F-box associated ubiquitination effector family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143325.1.S1_at	A	A3MS	POPTR_0019s08780	POPTR_0019s08780 (9)//POPTR_0019s08890 (9)//POPTR_0780s00200 (9)	scaffold_19:10336480-10336623(-) (9)//scaffold_19:10460452-10460586(-) (9)//scaffold_780:3826-3969(-) (9)	POPTR_0019s14400 (8)//POPTR_0019s14380 (8)//POPTR_0019s14340 (7)//POPTR_0019s14310 (6)	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.143335.1.S1_at	A	A2TS	POPTR_0014s11240	POPTR_0014s11240 (10)//POPTR_0746s00200 (10)	scaffold_14:8360757-8361684(+) (10)//scaffold_746:1034-1961(+) (10)	NA	Q8VYZ3	Probable pectinesterase 53	AT5G19730.1	Pectin lyase-like superfamily protein 	LOC_Os12g37660.1	"pectinesterase, putative, expressed"	Medtr1g106250.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.143342.1.S1_at	A	A1TS	POPTR_0005s23050	POPTR_0005s23050 (11)	scaffold_5:21883108-21883675(-) (11)	NA	Q9SY07	"Pentatricopeptide repeat-containing protein At4g02820, mitochondrial"	AT4G02820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g34340.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143354.1.S1_s_at	A	A1TS	POPTR_0018s03370	POPTR_0018s03370 (11)	scaffold_18:2977482-2977761(+) (11)	NA	Q9SB75	Probable xyloglucan glycosyltransferase 5	AT4G31590.1	Cellulose-synthase-like C5 	LOC_Os08g15420.1	"CSLC3 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143356.1.S1_s_at	A	A1TS	POPTR_0018s01390	POPTR_0018s01390 (11)	scaffold_18:1341954-1342219(+) (11)	NA	NA	NA	AT5G11420.1	"Protein of unknown function, DUF642 "	LOC_Os01g42520.1	expressed protein	Medtr1g013340.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143383.1.S1_at	A	A1MS	POPTR_0010s08720	POPTR_0010s08720 (9)	scaffold_10:9593803-9594302(+) (9)	NA	NA	NA	AT5G43630.1	zinc knuckle (CCHC-type) family protein 	NA	NA	Medtr5g007190.1	"Zinc finger, CCHC-type; Plus-3 "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.143388.1.S1_at	A	A1TS	POPTR_0011s02850	POPTR_0011s02850 (11)	scaffold_11:2798824-2799189(-) (11)	NA	NA	NA	AT1G29350.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os05g49180.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr4g136700.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14340.2.S1_a_at	A	A2TS	POPTR_0001s24570	POPTR_0001s24570 (11)//POPTR_0009s03530 (11)	scaffold_1:23827687-23827735(+) (11)//scaffold_9:4155112-4155160(+) (11)	NA	Q94B55	Putative E3 ubiquitin-protein ligase XBAT31	AT2G28840.1	XB3 ortholog 1 in Arabidopsis thaliana 	LOC_Os05g02130.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	AC146807_5.2	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14340.3.S1_a_at	A	A1TS	POPTR_0009s03530	POPTR_0009s03530 (11)	scaffold_9:4155386-4155756(+) (11)	NA	Q94B55	Putative E3 ubiquitin-protein ligase XBAT31	AT2G28840.1	XB3 ortholog 1 in Arabidopsis thaliana 	LOC_Os05g02130.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	AC146807_5.2	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14340.3.S1_at	A	A1MS	POPTR_0009s03530	POPTR_0009s03530 (10)	scaffold_9:4155403-4155698(+) (10)	NA	Q94B55	Putative E3 ubiquitin-protein ligase XBAT31	AT2G28840.1	XB3 ortholog 1 in Arabidopsis thaliana 	LOC_Os05g02130.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	AC146807_5.2	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143418.1.S1_at	A	A1TS	POPTR_0009s16090	POPTR_0009s16090 (9)	scaffold_9:12317543-12318493(-) (9)	NA	Q5R4J1	"Tryptophanyl-tRNA synthetase, cytoplasmic"	AT3G04600.3	Nucleotidylyl transferase superfamily protein 	LOC_Os12g35570.1	"tRNA synthetase, putative, expressed"	AC202489_14.1	"Aminoacyl-tRNA synthetase, class Ib AC202489.10 90501-83889 E EGN_Mt090430 200"	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.143460.1.S1_at	A	A1TS	POPTR_0002s17390	POPTR_0002s17390 (11)	scaffold_2:13150475-13151664(-) (11)	NA	NA	NA	AT2G46550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g30930.1	expressed protein	Medtr3g123640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14349.1.S1_at	A	A1TS	POPTR_0013s04090	POPTR_0013s04090 (9)	scaffold_13:2722859-2723326(+) (9)	NA	NA	NA	AT5G28640.1	SSXT family protein 	LOC_Os03g52320.1	"GRF-interacting factor 1, putative, expressed"	Medtr1g094100.1	SSXT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143496.1.S1_at	A	A1TS	POPTR_0002s26100	POPTR_0002s26100 (11)	scaffold_2:23070576-23071046(-) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT4G28600.1	no pollen germination related 2 	LOC_Os10g33290.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g090090.2	"NPGR2 ; calmodulin binding ta, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143501.1.S1_at	A	A1TS	POPTR_0014s02630	POPTR_0014s02630 (11)	scaffold_14:2188376-2188902(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.143505.1.S1_at	A	A1TS	POPTR_0011s08260	POPTR_0011s08260 (10)	scaffold_11:1873575-1873608(-) (10)//scaffold_11:9365103-9365136(+) (10)	NA	NA	NA	AT2G34585.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os07g05950.1	expressed protein	Medtr2g024490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143510.1.S1_s_at	A	A1TS	POPTR_0003s11530	POPTR_0003s11530 (11)	scaffold_3:12298661-12299037(+) (11)	NA	NA	NA	AT1G12330.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g14500.1	expressed protein	Medtr4g156150.1	"Peptidase M14, carboxypeptidase A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143511.1.S1_at	A	A1TS	POPTR_0014s12330	POPTR_0014s12330 (11)	scaffold_14:9110313-9111960(-) (11)	NA	P48768	Sodium/calcium exchanger 2	AT2G47600.1	magnesium/proton exchanger 	LOC_Os11g43860.2	"sodium/calcium exchanger protein, putative, expressed"	Medtr1g108330.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.143519.1.S1_at	A	A1TS	POPTR_0014s06260	POPTR_0014s06260 (11)	scaffold_14:4772330-4772838(-) (11)	NA	O04887	Pectinesterase 2	AT2G45220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr3g040380.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.143538.1.S1_at	A	A1TS	POPTR_0002s22530	POPTR_0002s22530 (11)	scaffold_2:19283764-19284174(-) (11)	NA	Q8L735	"Isoamylase 2, chloroplastic"	AT1G03310.1	debranching enzyme 1 	LOC_Os05g32710.1	"Alpha amylase, catalytic domain containing protein, expressed"	Medtr4g160980.1	"Alpha amylase, catalytic region; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.143538.2.A1_at	A	A1TS	POPTR_0002s22530	POPTR_0002s22530 (11)	scaffold_2:19283065-19283534(-) (11)	NA	Q8L735	"Isoamylase 2, chloroplastic"	AT1G03310.1	debranching enzyme 1 	LOC_Os05g32710.1	"Alpha amylase, catalytic domain containing protein, expressed"	Medtr4g160980.1	"Alpha amylase, catalytic region; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.143539.1.S1_at	A	A1TS	POPTR_0007s00740	POPTR_0007s00740 (11)	scaffold_7:374255-374573(-) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05675.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os09g34230.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr7g092470.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143576.1.S1_s_at	A	A1TS	POPTR_0003s20130	POPTR_0003s20130 (11)	scaffold_3:18720090-18720207(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os07g46670.3	"early response to dehydration 15, putative, expressed"	Medtr3g026140.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143601.1.S1_a_at	A	A1TS	POPTR_0001s07110	POPTR_0001s07110 (11)	scaffold_1:5403073-5403608(-) (11)	NA	Q5R7B0	Ribonuclease P protein subunit p29	AT2G43190.2	ribonuclease P family protein 	LOC_Os05g39530.1	"ribonuclease P family protein, putative, expressed"	Medtr5g007980.1	Ribonuclease P subunit 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing||GO:0008033|tRNA processing||GO:0006379|mRNA cleavage	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	GO:0030677|ribonuclease P complex||GO:0000172|ribonuclease MRP complex
PtpAffx.143610.1.S1_at	A	A1TS	POPTR_0005s24650	POPTR_0005s24650 (10)	scaffold_5:23117152-23117598(-) (10)	NA	Q5SRX1	TOM1-like protein 2	AT1G06210.1	ENTH/VHS/GAT family protein 	LOC_Os10g42724.1	"VHS and GAT domain containing protein, expressed"	Medtr5g007600.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.143610.2.S1_a_at	A	A2TS	POPTR_0002s03910	POPTR_0002s03910 (11)//POPTR_0005s24650 (11)	scaffold_2:2450588-2450906(+) (11)//scaffold_5:23120156-23120474(-) (11)	NA	Q54GH3	Target of Myb protein 1	AT1G06210.1	ENTH/VHS/GAT family protein 	LOC_Os10g42724.1	"VHS and GAT domain containing protein, expressed"	Medtr5g007600.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.14362.1.A1_s_at	A	A9TS	POPTR_0001s22830	POPTR_0001s22910 (11)//POPTR_0001s22960 (11)//POPTR_0001s22870 (11)//POPTR_0001s22830 (11)//POPTR_0001s22920 (11)//POPTR_0001s22930 (11)//POPTR_0001s22900 (11)//POPTR_0001s22880 (11)//POPTR_0272s00200 (10)	scaffold_1:21742626-21742987(-) (11)//scaffold_1:21808941-21818278(-) (11)//scaffold_1:21832941-21833303(-) (11)//scaffold_1:21859603-21859965(-) (11)//scaffold_1:21879687-21880049(-) (11)//scaffold_1:21901525-21901887(-) (11)//scaffold_1:21925030-21925392(-) (11)//scaffold_1:21946972-21947334(-) (11)//scaffold_1:22004809-22013853(-) (11)//scaffold_272:11440-11537(-) (10)//scaffold_506:14731-14826(+) (9)	POPTR_0001s22850 (8)//POPTR_0001s22860 (6)	Q9FSG7	Thaumatin-like protein 1a	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os07g23470.1	"thaumatin, putative, expressed"	Medtr7g124050.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143637.1.S1_at	A	A1TS	POPTR_0018s04110	POPTR_0018s04110 (10)	scaffold_18:3500063-3500694(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14366.1.S1_at	A	A1TS	POPTR_0006s12740	POPTR_0006s12740 (11)	scaffold_6:9886230-9888125(+) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.143665.1.S1_at	A	A1TS	POPTR_0006s20660	POPTR_0006s20660 (11)	scaffold_6:19673241-19675799(-) (11)	NA	Q8S9M1	"Probable plastid-lipid-associated protein 13, chloroplastic"	AT2G42130.4	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g57020.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143673.1.S1_at	A	A1TS	POPTR_0001s37320	POPTR_0001s37320 (11)	scaffold_1:36302115-36302204(-) (11)	NA	P67131	UPF0053 protein Mb2387c	AT3G13070.1	CBS domain-containing protein / transporter associated domain-containing protein 	LOC_Os03g39640.2	"CBS domain containing protein, expressed"	Medtr5g102230.1	CBS; Transporter-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143673.1.S1_s_at	A	A1TS	POPTR_0001s37320	POPTR_0001s37320 (11)	scaffold_1:36301683-36302114(-) (11)	NA	P67131	UPF0053 protein Mb2387c	AT3G13070.1	CBS domain-containing protein / transporter associated domain-containing protein 	LOC_Os03g39640.2	"CBS domain containing protein, expressed"	Medtr5g102230.1	CBS; Transporter-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143676.1.S1_at	A	A1TS	POPTR_0003s07570	POPTR_0003s07570 (10)	scaffold_3:9137022-9137932(-) (10)	NA	O34990	Formyltetrahydrofolate deformylase	AT5G47435.1	"formyltetrahydrofolate deformylase, putative "	LOC_Os03g01222.4	"formyl transferase, putative, expressed"	Medtr7g014920.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.143676.3.S1_a_at	A	A2TS	POPTR_0001s15650	POPTR_0003s07570 (11)//POPTR_0001s15650 (11)	scaffold_1:12478652-12479408(+) (11)//scaffold_3:9137302-9138099(-) (11)	NA	O34990	Formyltetrahydrofolate deformylase	AT5G47435.1	"formyltetrahydrofolate deformylase, putative "	LOC_Os03g01222.3	"formyl transferase, putative, expressed"	Medtr7g014920.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.143676.3.S1_at	A	A1TS	POPTR_0001s15650	POPTR_0001s15650 (10)	scaffold_1:12478568-12479618(+) (11)	NA	O34990	Formyltetrahydrofolate deformylase	AT5G47435.1	"formyltetrahydrofolate deformylase, putative "	LOC_Os03g01222.3	"formyl transferase, putative, expressed"	Medtr7g014920.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.143691.1.S1_s_at	A	A1TS	POPTR_0001s37520	POPTR_0001s37520 (11)	scaffold_1:36496289-36496399(+) (11)	NA	NA	NA	AT3G13130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). 	NA	NA	Medtr5g103200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143705.2.S1_s_at	A	A1TS	POPTR_0013s13470	POPTR_0013s13470 (11)	scaffold_13:13929682-13933428(-) (11)	NA	Q94KI8	Two pore calcium channel protein 1	AT4G03560.1	two-pore  channel 1 	LOC_Os01g48680.2	"two pore calcium channel protein 1, putative, expressed"	NA	NA	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.143705.4.S1_s_at	A	A1TS	POPTR_0017s14050	POPTR_0017s14050 (11)	scaffold_17:14207527-14208407(+) (11)	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT1G67230.1	little nuclei1 	LOC_Os02g48010.1	"nuclear matrix constituent protein 1-like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143706.1.S1_at	A	A1TS	POPTR_0001s44020	POPTR_0001s44020 (9)	scaffold_1:44491074-44492877(+) (9)	NA	NA	NA	AT5G54540.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os08g08190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143754.1.S1_at	A	A1TS	POPTR_0020s00320	POPTR_0020s00320 (11)	scaffold_20:367397-368550(-) (11)	NA	O82256	Zinc finger protein CONSTANS-LIKE 13	AT2G47890.1	B-box type zinc finger protein with CCT domain 	LOC_Os03g22770.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g129880.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.14376.1.A1_at	A	A1TS	POPTR_0006s24820	POPTR_0006s24820 (11)	scaffold_6:23348377-23348877(-) (11)	NA	P42044	"Ferrochelatase-2, chloroplastic"	AT5G26030.2	ferrochelatase 1 	LOC_Os09g12560.2	"ferrochelatase-2, chloroplast precursor, putative, expressed"	Medtr3g140120.1	Ferrochelatase 	GO:0006783|heme biosynthetic process	GO:0004325|ferrochelatase activity	NA
PtpAffx.143760.1.S1_at	A	A1TS	POPTR_0006s03720	POPTR_0006s03720 (11)	scaffold_6:2490164-2492343(+) (11)	POPTR_0016s03590 (6)	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr7g106840.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.143786.1.S1_at	A	A1TS	POPTR_0004s04970	POPTR_0004s04970 (10)	scaffold_4:3727692-3730079(-) (10)	NA	O23661	Auxin response factor 3	AT2G33860.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os01g48060.3	"auxin response factor, putative, expressed"	Medtr2g018270.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.143791.1.S1_at	A	A2TS	POPTR_0014s01860	POPTR_0014s01860 (9)//POPTR_0014s17560 (9)	scaffold_14:1709760-1710437(-) (9)//scaffold_14:13808967-13809648(-) (9)	NA	P33642	Probable D-amino acid oxidase PA4548	AT5G48440.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g33900.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr7g046700.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.143791.2.S1_s_at	A	A2TS	POPTR_0014s01840	POPTR_0014s01870 (11)//POPTR_0014s01840 (11)	scaffold_14:1696587-1696644(-) (11)//scaffold_14:1713651-1713708(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143801.1.S1_s_at	A	A1MS	POPTR_0005s02680	POPTR_0005s02680 (10)	scaffold_5:1710564-1710803(-) (10)	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr8g138850.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143820.1.S1_s_at	A	A1TS	POPTR_0001s37810	POPTR_0001s37810 (11)	scaffold_1:36884956-36887680(-) (11)	NA	Q75DK1	SEC14 cytosolic factor	AT1G55840.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g10650.1	"CRAL/TRIO domain containing protein, expressed"	Medtr3g079820.2	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143826.1.S1_at	A	A1TS	POPTR_0014s09150	POPTR_0014s09150 (11)	scaffold_14:6784695-6785701(+) (11)	NA	NA	NA	AT1G01430.1	TRICHOME BIREFRINGENCE-LIKE 25 	LOC_Os05g12380.1	expressed protein	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143837.1.S1_a_at	A	A1TS	POPTR_0015s13720	POPTR_0015s13720 (11)	scaffold_15:13543457-13544183(+) (11)	NA	NA	NA	AT4G26810.2	SWIB/MDM2 domain superfamily protein 	LOC_Os09g04720.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143852.1.S1_s_at	A	A1TS	POPTR_0002s08180	POPTR_0002s08180 (11)	scaffold_2:5675857-5676542(+) (11)	NA	Q6S001	Kinesin-related protein 11	AT1G21730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53520.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g112390.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.143906.1.S1_s_at	A	A1TS	POPTR_0004s01770	POPTR_0004s01770 (11)	scaffold_4:1071701-1072555(+) (11)	NA	NA	NA	AT4G21790.1	tobamovirus multiplication 1 	LOC_Os03g36790.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143914.1.S1_s_at	A	A1TS	POPTR_0011s03990	POPTR_0011s03990 (9)	scaffold_11:4054343-4055334(+) (9)	NA	NA	NA	AT1G11380.1	PLAC8 family protein 	LOC_Os07g36820.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g124650.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143938.1.S1_s_at	A	A1TS	POPTR_0014s04300	POPTR_0014s04300 (11)	scaffold_14:3359373-3359745(+) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g41930.2	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.143949.1.S1_at	A	A1MA	POPTR_0019s14200	POPTR_0019s14200 (10)	scaffold_19:14945841-14946282(+) (10)	NA	NA	NA	AT4G03260.2	Outer arm dynein light chain 1 protein 	LOC_Os07g01550.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.143968.1.S1_at	A	A1TS	POPTR_0006s07840	POPTR_0006s07840 (11)	scaffold_6:5737618-5738390(+) (11)	NA	Q6NZ09	Proteasomal ubiquitin receptor ADRM1	AT2G26590.3	regulatory particle non-ATPase 13 	LOC_Os05g51640.2	"adhesion regulating molecule family, putative, expressed"	Medtr4g161200.1	Adhesion regulating molecule 	NA	NA	GO:0005737|cytoplasm||GO:0005634|nucleus
PtpAffx.143974.1.S1_s_at	A	A1TS	POPTR_0017s12880	POPTR_0017s12880 (11)	scaffold_17:13060864-13062491(-) (11)	NA	A8IR43	Ribosome biogenesis protein WDR12 homolog	AT5G15550.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g40930.1	"WD repeat-containing protein 12, putative, expressed"	Medtr7g117600.1	WD40-like; NLE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143978.1.S1_at	A	A1TS	POPTR_0010s21550	POPTR_0010s21550 (11)	scaffold_10:18789144-18789963(+) (11)	NA	O95163	Elongator complex protein 1	AT5G13680.1	IKI3 family protein 	LOC_Os07g37640.1	"IKI3 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14400.1.A1_at	A	A1TS	POPTR_0001s26950	POPTR_0001s26950 (11)	scaffold_1:25924250-25925808(-) (11)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os04g28180.1	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	GO:0005622|intracellular
PtpAffx.14400.2.S1_at	A	A1TS	POPTR_0001s37140	POPTR_0001s37140 (11)	scaffold_1:35964978-35966144(+) (11)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os04g28180.1	"ribosomal protein, putative, expressed"	Medtr8g012690.1	"Plant EC metallothionein-like protein, family 15; Ribosomal protein S8E "	NA	NA	GO:0005622|intracellular
PtpAffx.144004.1.S1_at	A	A1TS	POPTR_0016s00330	POPTR_0016s00330 (11)	scaffold_16:60215-60638(-) (11)	NA	NA	NA	AT3G54780.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os09g12720.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g033390.1	"Zinc finger, RING-type; von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144008.1.S1_s_at	A	A1TS	POPTR_0001s36720	POPTR_0001s36720 (9)	scaffold_1:35441355-35441808(+) (9)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.144011.1.S1_at	A	A1TS	POPTR_0018s11430	POPTR_0018s11430 (10)	scaffold_18:12169573-12170226(-) (10)	NA	NA	NA	AT5G57910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16930.1	expressed protein	Medtr8g145180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144014.1.S1_a_at	A	A1TS	POPTR_0018s12990	POPTR_0018s12990 (11)	scaffold_18:13463540-13465633(+) (11)	NA	Q8GW46	Axial regulator YABBY 5	AT2G26580.2	plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr8g120820.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14403.1.S1_s_at	A	A1TS	POPTR_0030s00230	POPTR_0030s00230 (11)	scaffold_30:44713-45136(-) (11)	NA	NA	NA	AT3G05100.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g47150.2	expressed protein	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.144034.1.S1_s_at	A	A1TS	POPTR_0007s00290	POPTR_0007s00290 (11)	scaffold_7:77596-77717(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144041.1.S1_s_at	A	A2TS	POPTR_0008s18910	POPTR_0008s18910 (11)//POPTR_0010s05850 (11)	scaffold_10:7307608-7310631(-) (11)//scaffold_8:12904645-12907183(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G26370.1	O-fucosyltransferase family protein 	LOC_Os02g06400.1	"growth regulator related protein, putative, expressed"	Medtr3g102440.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144050.1.S1_at	A	A1TS	POPTR_0001s01930	POPTR_0001s01930 (11)	scaffold_1:1408686-1410510(-) (11)	NA	Q39639	"Glycerol-3-phosphate acyltransferase, chloroplastic"	AT1G32200.2	phospholipid/glycerol acyltransferase family protein 	LOC_Os10g42720.1	"acyltransferase, putative, expressed"	Medtr5g029110.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.144053.1.S1_at	A	A1TS	POPTR_0007s14690	POPTR_0007s14690 (10)	scaffold_7:14462123-14462619(-) (10)	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g12950.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.144059.1.S1_at	A	A1TS	POPTR_0017s04030	POPTR_0017s04030 (11)	scaffold_17:3033825-3034738(-) (11)	NA	O80568	Inositol-tetrakisphosphate 1-kinase 4	AT2G43980.1	"inositol 1,3,4-trisphosphate 5/6-kinase 4 "	LOC_Os09g34300.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.144067.1.S1_s_at	A	A1TS	POPTR_0018s13210	POPTR_0018s13210 (11)	scaffold_18:13617325-13617659(-) (11)	NA	Q84TI7	Sodium transporter HKT1	AT4G10310.1	high-affinity K+ transporter 1 	LOC_Os02g07830.1	"OsHKT1;3 - Na+ transporter, expressed"	Medtr6g092400.1	Cation transporter 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	NA
PtpAffx.144077.1.S1_at	A	A1TS	POPTR_0003s03120	POPTR_0003s03120 (11)	scaffold_3:3477967-3480918(+) (11)	POPTR_0001s20820 (6)	A8N5E5	Protein SEY1	AT1G72960.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os01g39310.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144078.1.S1_at	A	A1TS	POPTR_0007s11760	POPTR_0007s11760 (11)	scaffold_7:12153384-12155116(-) (11)	NA	NA	NA	AT4G37130.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g28019.1	"nucleoporin p58/p45, putative, expressed"	Medtr5g018450.1	"nucleoporin-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144082.1.S1_at	A	A1TS	POPTR_0001s38800	POPTR_0001s38800 (9)	scaffold_1:38077879-38078746(+) (9)	NA	Q9FPS9	Ubiquitin carboxyl-terminal hydrolase 15	AT1G17110.1	ubiquitin-specific protease 15 	LOC_Os02g14730.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.144082.1.S1_s_at	A	A2TS	POPTR_0001s38800	POPTR_0001s38800 (11)//POPTR_0011s09750 (11)	scaffold_1:38078751-38078991(+) (11)//scaffold_11:12155273-12155513(-) (11)	NA	Q9FPS9	Ubiquitin carboxyl-terminal hydrolase 15	AT1G17110.1	ubiquitin-specific protease 15 	LOC_Os02g14730.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.144087.1.S1_at	A	A1TS	POPTR_0005s11690	POPTR_0005s11690 (11)	scaffold_5:8521698-8522485(-) (11)	NA	Q3TSG4	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.144089.1.S1_s_at	A	A1TS	POPTR_0002s12870	POPTR_0002s12870 (11)	scaffold_2:9573418-9575392(-) (11)	POPTR_0014s03110 (7)	Q9FX08	Probable protein phosphatase 2C 12	AT1G47380.1	Protein phosphatase 2C family protein 	LOC_Os02g35910.1	"protein phosphotase protein, putative, expressed"	Medtr3g147960.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14409.1.S1_at	A	A1TS	POPTR_0006s06740	POPTR_0006s06740 (9)	scaffold_6:4871744-4872243(-) (9)	NA	NA	NA	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr8g120620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14411.1.A1_at	A	A1TS	POPTR_0002s14780	POPTR_0002s14780 (11)	scaffold_2:10965651-10966790(+) (11)	NA	P62302	40S ribosomal protein S13	AT3G60770.1	Ribosomal protein S13/S15 	LOC_Os08g02410.1	"40S ribosomal protein S13, putative, expressed"	Medtr4g025470.1	"S15/NS1, RNA-binding; Ribosomal S13S15 N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.144115.1.S1_s_at	A	A1TS	POPTR_0005s20490	POPTR_0005s20490 (11)	scaffold_5:19544730-19544950(+) (11)	NA	NA	NA	AT1G21610.1	wound-responsive family protein 	LOC_Os05g34900.2	"wound-responsive family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14412.1.S1_at	A	A1TS	POPTR_0018s11460	POPTR_0018s11460 (11)	scaffold_18:12191704-12192755(+) (11)	NA	Q8GMT0	UPF0133 protein Synpcc7942_0464	AT2G24020.1	"Uncharacterised BCR, YbaB family COG0718 "	LOC_Os02g08380.1	"CR084 protein, putative, expressed"	Medtr8g145200.1	Conserved hypothetical protein 103 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144125.1.S1_s_at	A	A2TS	POPTR_0012s05310	POPTR_0012s05310 (11)//POPTR_0015s03690 (11)	scaffold_12:4916814-4917023(+) (11)//scaffold_15:3513195-3513404(-) (11)	NA	NA	NA	AT1G73850.1	Protein of unknown function (DUF1666) 	LOC_Os01g03870.1	expressed protein	Medtr6g028420.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144130.1.S1_s_at	A	A1TS	POPTR_0001s11360	POPTR_0001s11360 (11)	scaffold_1:8809450-8809592(-) (11)	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.144134.1.S1_a_at	A	A2TS	POPTR_0008s09300	POPTR_0010s16810 (11)//POPTR_0008s09300 (11)	scaffold_10:15662118-15662348(+) (11)//scaffold_8:5755786-5756015(-) (11)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT5G61240.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g11340.1	"leucine-rich repeat resistance protein, putative, expressed"	Medtr5g046640.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.144134.1.S1_at	A	A1TS	POPTR_0008s09300	POPTR_0008s09300 (11)	scaffold_8:5755712-5756899(-) (11)	POPTR_0010s16810 (6)	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT5G61240.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g11340.1	"leucine-rich repeat resistance protein, putative, expressed"	Medtr5g046640.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.144134.2.A1_at	A	A1TS	POPTR_0010s16810	POPTR_0010s16810 (11)	scaffold_10:15661878-15662498(+) (11)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT5G61240.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g11340.1	"leucine-rich repeat resistance protein, putative, expressed"	Medtr5g046640.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.14414.1.S1_at	A	A1TS	POPTR_0015s07710	POPTR_0015s07710 (9)	scaffold_15:8995777-8996200(-) (9)	NA	Q9LV11	"ATPase 11, plasma membrane-type"	AT5G62670.1	H(+)-ATPase 11 	LOC_Os12g44150.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.144144.1.S1_s_at	A	A1TS	POPTR_0006s15390	POPTR_0006s15390 (9)	scaffold_6:12752205-12761769(+) (11)	NA	P12955	Xaa-Pro dipeptidase	AT4G29490.1	Metallopeptidase M24 family protein 	LOC_Os02g13140.1	"xaa-Pro dipeptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144147.1.S1_at	A	A1TS	POPTR_0011s07180	POPTR_0011s07180 (9)	scaffold_11:7945735-7946938(-) (9)	NA	Q9UHR5	SAP30-binding protein	AT1G29220.1	transcriptional regulator family protein 	LOC_Os01g55490.1	"transcriptional regulator family protein, putative, expressed"	Medtr1g107610.1	HCNGP-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144148.1.S1_s_at	A	A1TS	POPTR_0002s22770	POPTR_0002s22770 (11)	scaffold_2:19689723-19692390(+) (11)	NA	O82264	NPL4-like protein 2	AT2G47970.1	Nuclear pore localisation protein NPL4 	LOC_Os01g27990.1	"NPL4, putative, expressed"	AC235488_3.1	Ubiquitin; NPL4 AC235488.1 4598-10630 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144148.2.S1_s_at	A	A1TS	POPTR_0002s22770	POPTR_0002s22770 (11)	scaffold_2:19689016-19689235(+) (11)	NA	O82264	NPL4-like protein 2	AT2G47970.1	Nuclear pore localisation protein NPL4 	LOC_Os01g27990.1	"NPL4, putative, expressed"	AC235488_3.1	Ubiquitin; NPL4 AC235488.1 4598-10630 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144148.3.S1_at	A	A1TS	POPTR_0014s13120	POPTR_0014s13120 (11)	scaffold_14:9644399-9644795(-) (11)	NA	Q9LYC2	NPL4-like protein 1	AT3G63000.1	NPL4-like protein 1 	LOC_Os01g27990.1	"NPL4, putative, expressed"	AC235488_3.1	Ubiquitin; NPL4 AC235488.1 4598-10630 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144183.1.S1_s_at	A	A1TS	POPTR_0005s18890	POPTR_0005s18890 (11)	scaffold_5:17304559-17304596(-) (11)	NA	Q9URY7	Putative formamidase C869.04	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008152|metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	NA
PtpAffx.144197.1.A1_a_at	A	A1TS	POPTR_0001s14630	POPTR_0001s14630 (11)	scaffold_1:11479679-11480071(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.144197.2.A1_at	A	A1TS	POPTR_0001s14630	POPTR_0001s14630 (10)	scaffold_1:11479558-11479810(-) (10)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.144221.2.S1_at	A	A1TS	POPTR_0060s00194	POPTR_0060s00194 (11)	scaffold_60:5470-5949(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144224.1.S1_at	A	A1TS	POPTR_0007s14600	POPTR_0007s14600 (11)	scaffold_7:14355241-14355864(+) (11)	NA	Q2TA14	Lysosomal Pro-X carboxypeptidase	AT5G65760.1	Serine carboxypeptidase S28 family protein 	LOC_Os01g56150.1	"OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.144228.1.S1_at	A	A1TS	POPTR_0011s17180	POPTR_0011s17180 (11)	scaffold_11:18761107-18762956(+) (11)	NA	Q9LTT3	High mobility group B protein 10	AT3G13350.1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain 	LOC_Os02g27060.1	"high mobility group, putative, expressed"	Medtr1g146490.1	HMG1/2 (high mobility group) box; AT-rich interaction region 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.14425.1.S1_a_at	A	A2TS	POPTR_0001s32880	POPTR_0001s32880 (11)//POPTR_0017s08680 (11)	scaffold_1:31144607-31145581(-) (11)//scaffold_17:7309781-7311226(-) (11)	NA	O23264	Putative selenium-binding protein	AT4G14030.2	selenium-binding protein 1 	LOC_Os01g68770.1	"selenium-binding protein, putative, expressed"	Medtr3g104730.1	Selenium-binding protein 	NA	GO:0008430|selenium binding	NA
PtpAffx.14425.1.S1_at	A	A1TS	POPTR_0017s08680	POPTR_0017s08680 (11)	scaffold_17:7309635-7311303(-) (11)	NA	O23264	Putative selenium-binding protein	AT4G14030.2	selenium-binding protein 1 	LOC_Os01g68770.1	"selenium-binding protein, putative, expressed"	Medtr3g104730.1	Selenium-binding protein 	NA	GO:0008430|selenium binding	NA
PtpAffx.14425.2.S1_at	A	A1TS	POPTR_0001s32880	POPTR_0001s32880 (11)	scaffold_1:31144470-31145653(-) (11)	NA	O23264	Putative selenium-binding protein	AT4G14030.2	selenium-binding protein 1 	LOC_Os01g68770.1	"selenium-binding protein, putative, expressed"	Medtr3g104730.1	Selenium-binding protein 	NA	GO:0008430|selenium binding	NA
PtpAffx.144250.1.S1_s_at	A	A1TS	POPTR_0009s07200	POPTR_0009s07200 (11)	scaffold_9:6780578-6783111(-) (11)	NA	Q55DL0	Dihydropyrimidinase	AT5G12200.1	pyrimidine 2 	LOC_Os01g59340.3	"dihydropyrimidinase, putative, expressed"	Medtr5g096380.1	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.144250.2.S1_at	A	A1TS	POPTR_0001s28020	POPTR_0001s28020 (9)	scaffold_1:26828411-26830596(-) (9)	NA	Q55DL0	Dihydropyrimidinase	AT5G12200.1	pyrimidine 2 	LOC_Os01g59340.3	"dihydropyrimidinase, putative, expressed"	Medtr5g096300.1	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.144251.1.S1_at	A	A1TS	POPTR_0011s14470	POPTR_0011s14470 (9)	scaffold_11:16869307-16869774(+) (9)	NA	P40340	Tat-binding homolog 7	AT3G15120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g47800.1	"AAA-type ATPase family protein, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.144253.1.S1_at	A	A1TS	POPTR_0015s14080	POPTR_0015s14080 (11)	scaffold_12:14101693-14101730(-) (10)//scaffold_15:13816303-13816346(-) (11)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT4G25390.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	Medtr8g150930.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144283.1.S1_at	A	A1TS	POPTR_0009s07040	POPTR_0009s07040 (11)	scaffold_9:6677924-6680214(+) (11)	NA	Q93WX6	"Cysteine desulfurase 2, chloroplastic"	AT1G08490.1	chloroplastic NIFS-like cysteine desulfurase 	LOC_Os12g18900.1	"aminotransferase, putative, expressed"	Medtr3g105250.1	"Aminotransferase, class V; "	GO:0008152|metabolic process	NA	NA
PtpAffx.14429.1.A1_a_at	A	A1TS	POPTR_0011s00810	POPTR_0011s00810 (11)	scaffold_11:410094-411268(-) (11)	NA	Q8WNV7	Dehydrogenase/reductase SDR family member 4	AT4G05530.1	indole-3-butyric acid response 1 	LOC_Os09g04730.1	"dehydrogenase/reductase SDR family member 2, putative, expressed"	Medtr8g147520.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.144292.1.S1_at	A	A1TS	POPTR_0001s11160	POPTR_0001s11160 (11)	scaffold_1:8650673-8652134(-) (11)	NA	NA	NA	AT3G05675.1	BTB/POZ domain-containing protein 	LOC_Os06g03840.1	"H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	AC233661_10.2	hypothetical protein AC233661.2 56500-58369 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144293.1.S1_at	A	A1TS	POPTR_0004s04030	POPTR_0004s04030 (11)	scaffold_4:2868526-2871035(-) (11)	NA	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	AT3G09010.1	Protein kinase superfamily protein 	LOC_Os04g58250.1	"protein kinase, putative, expressed"	Medtr2g014900.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144298.1.A1_at	A	A1TS	POPTR_0016s08130	POPTR_0016s08130 (10)	scaffold_16:5987092-5987232(-) (10)	NA	Q6DF08	UDP-glucuronic acid decarboxylase 1	AT3G53520.1	UDP-glucuronic acid decarboxylase 1 	LOC_Os05g29990.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.144328.1.S1_s_at	A	A1TS	POPTR_0010s22510	POPTR_0010s22510 (11)	scaffold_10:19408311-19409040(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144328.2.S1_at	A	A1TS	POPTR_0010s22510	POPTR_0010s22510 (11)	scaffold_10:19410806-19410885(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144328.2.S1_s_at	A	A1TS	POPTR_0010s22510	POPTR_0010s22510 (11)	scaffold_10:19410748-19411090(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144348.1.S1_a_at	A	A2TS	POPTR_0006s26420	POPTR_0018s01200 (11)//POPTR_0006s26420 (11)	scaffold_18:1113847-1114174(-) (11)//scaffold_6:24635803-24636130(-) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT4G32551.1	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 	LOC_Os01g42260.3	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr3g136270.1	"Lissencephaly type-1-like homology motif; Single-stranded DNA-binding protein, SSDP; WD40-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144348.1.S1_at	A	A1MS	POPTR_0018s01200	POPTR_0018s01200 (9)	scaffold_18:1113535-1113723(-) (9)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT4G32551.1	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 	LOC_Os01g42270.1	"transcriptional corepressor LEUNIG, putative"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144348.2.S1_at	A	A1TS	POPTR_0018s01200	POPTR_0018s01200 (10)	scaffold_18:1112449-1113852(-) (10)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT4G32551.1	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 	LOC_Os01g42270.1	"transcriptional corepressor LEUNIG, putative"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144362.1.S1_at	A	A1TS	POPTR_0006s03790	POPTR_0006s03790 (10)	scaffold_6:2544552-2545819(-) (10)	NA	Q9C977	"Pentatricopeptide repeat-containing protein At1g80270, mitochondrial"	AT1G80270.3	PENTATRICOPEPTIDE REPEAT 596 	LOC_Os12g07260.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g106790.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144381.1.A1_at	A	A1TS	POPTR_0005s10130	POPTR_0005s10130 (11)	scaffold_5:7232568-7234390(-) (11)	NA	B2RS91	RNA polymerase I-specific transcription initiation factor RRN3	AT2G34750.1	RNA polymerase I specific transcription initiation factor RRN3 protein 	LOC_Os06g47350.2	"RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed"	Medtr4g134310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144402.1.S1_at	A	A1TS	POPTR_0008s13840	POPTR_0008s13840 (10)	scaffold_8:9122007-9123546(+) (10)	NA	NA	NA	AT1G68080.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g13550.1	"oxidoreductase, putative, expressed"	AC146550_12.1	"oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, putative AC146550.40 43818-43015 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144411.1.A1_at	A	A1TA	POPTR_0001s09640	POPTR_0001s09640 (9)	scaffold_1:7346630-7347796(+) (10)	NA	NA	NA	AT1G75060.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g08450.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144423.1.S1_at	A	A1TS	POPTR_0013s02780	POPTR_0013s02780 (10)	scaffold_13:1676632-1678350(+) (10)	NA	O22494	"Glutathione synthetase, chloroplastic"	AT5G27380.1	glutathione synthetase 2 	LOC_Os11g42350.1	"glutathione synthetase, chloroplast precursor, putative, expressed"	Medtr7g139670.1	"Eukaryotic glutathione synthase; Eukaryotic glutathione synthase, ATP-binding; "	GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004363|glutathione synthase activity||GO:0005524|ATP binding	NA
PtpAffx.144428.1.S1_s_at	A	A3TS	POPTR_0006s07780	POPTR_0269s00200 (11)//POPTR_0006s07780 (11)//POPTR_0018s14250 (11)	scaffold_18:14500238-14500623(-) (11)//scaffold_269:2728-3109(+) (11)//scaffold_6:5696224-5696609(+) (11)	NA	B9HBA8	"Biotin carboxylase 1, chloroplastic"	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.144429.1.S1_at	A	A1TS	POPTR_0009s10980	POPTR_0009s10980 (11)	scaffold_9:9267320-9268245(-) (11)	NA	Q9FGT7	Two-component response regulator ARR18	AT2G03500.1	Homeodomain-like superfamily protein 	LOC_Os12g39640.1	"MYB family transcription factor, putative, expressed"	Medtr4g129010.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144436.1.S1_s_at	A	A1TS	POPTR_0009s08230	POPTR_0009s08230 (11)	scaffold_9:7572077-7573061(-) (11)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.1	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.144438.1.S1_at	A	A1TS	POPTR_0006s24530	POPTR_0006s24530 (11)	scaffold_6:23115114-23117522(+) (11)	NA	Q66GS2	"Probable beta-1,3-galactosyltransferase 12"	AT2G26100.1	Galactosyltransferase family protein 	LOC_Os06g06280.2	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.144446.1.S1_at	A	A1TS	POPTR_0003s14390	POPTR_0003s14390 (11)	scaffold_3:14473274-14474197(+) (11)	POPTR_0003s14400 (8)//POPTR_0001s11050 (6)	P19813	Trehalase	AT4G24040.1	trehalase 1 	LOC_Os10g37660.1	"trehalase precursor, putative, expressed"	NA	NA	GO:0005991|trehalose metabolic process	"GO:0004555|""alpha,alpha-trehalase activity"""	NA
PtpAffx.144449.1.S1_at	A	A1TS	POPTR_0017s01390	POPTR_0017s01390 (11)	scaffold_17:968348-969281(+) (11)	NA	Q9SDX3	UTP--glucose-1-phosphate uridylyltransferase	AT5G17310.2	UDP-glucose pyrophosphorylase 2 	LOC_Os09g38030.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	Medtr5g084880.2	UTP--glucose-1-phosphate uridylyltransferase 	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.144449.1.S1_s_at	A	A2TS	POPTR_0004s07280	POPTR_0004s07280 (11)//POPTR_0017s01390 (11)	scaffold_17:968337-970151(+) (11)//scaffold_4:6008915-6010831(+) (11)	NA	Q9SDX3	UTP--glucose-1-phosphate uridylyltransferase	AT5G17310.2	UDP-glucose pyrophosphorylase 2 	LOC_Os09g38030.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	Medtr5g084880.2	UTP--glucose-1-phosphate uridylyltransferase 	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.14446.1.S1_at	A	A1TS	POPTR_0014s10960	POPTR_0014s10960 (11)	scaffold_14:8186517-8187056(+) (11)	NA	Q9S7P5	Squamosa promoter-binding-like protein 12	AT3G60030.1	squamosa promoter-binding protein-like 12 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.14446.2.S1_a_at	A	A2TS	POPTR_0002s18970	POPTR_0002s18970 (11)//POPTR_0014s10960 (11)	scaffold_14:8185203-8185610(+) (11)//scaffold_2:14863002-14863406(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.14446.2.S1_at	A	A1TS	POPTR_0002s18970	POPTR_0002s18970 (10)	scaffold_2:14862411-14863339(+) (10)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.144479.1.S1_at	A	A1TS	POPTR_0010s17670	POPTR_0010s17670 (11)	scaffold_10:16163727-16166351(-) (11)	NA	Q3KGL4	Uracil-DNA glycosylase	AT3G18630.1	uracil dna glycosylase 	LOC_Os04g57730.1	"uracil-DNA glycosylase, putative, expressed"	Medtr4g104620.1	Uracil-DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14449.2.A1_a_at	A	A1TS	POPTR_0001s19440	POPTR_0001s19440 (11)	scaffold_1:17114202-17114490(-) (11)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14449.2.A1_at	A	A1TS	POPTR_0001s19440	POPTR_0001s19440 (11)	scaffold_1:17114172-17115638(-) (11)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1445.1.A1_at	A	A1TS	POPTR_0010s20550	POPTR_0010s20550 (11)	scaffold_10:18087422-18089337(+) (11)	NA	Q8W115	PRA1 family protein A3	AT3G11402.2	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os05g38160.1	"prenylated rab acceptor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144550.1.S1_s_at	A	A2TS	POPTR_0017s11650	POPTR_0017s11650 (11)//POPTR_0017s11660 (11)	scaffold_17:11436225-11436261(+) (11)//scaffold_17:11450135-11450171(+) (11)	NA	Q5EA79	Aldose 1-epimerase	AT3G47800.1	Galactose mutarotase-like superfamily protein 	LOC_Os02g36600.1	"aldose 1-epimerase, putative, expressed"	Medtr7g009340.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.144588.1.S1_at	A	A1TS	POPTR_0001s40440	POPTR_0001s40440 (11)	scaffold_1:39888180-39888989(-) (11)	NA	Q5E9N0	Bystin	AT1G31660.1	CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). 	LOC_Os09g18320.1	"bystin, putative, expressed"	Medtr5g026110.1	Bystin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144588.2.S1_s_at	A	A1TS	POPTR_0011s11380	POPTR_0011s11380 (11)	scaffold_11:14138042-14138900(-) (11)	NA	Q13895	Bystin	AT1G31660.1	CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). 	LOC_Os09g18320.1	"bystin, putative, expressed"	Medtr5g026110.1	Bystin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144589.1.S1_at	A	A1TS	POPTR_0013s01900	POPTR_0013s01900 (11)	scaffold_13:1098187-1099513(+) (11)	NA	Q3E6S8	Putative protease Do-like 14	AT5G27660.1	Trypsin family protein with PDZ domain 	LOC_Os11g14170.1	"OsDegp12 - Putative Deg protease homologue, expressed"	Medtr7g138970.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidase S1C, HrtA/DegP2/Q/S "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.14459.1.S1_at	A	A1TS	POPTR_0010s09370	POPTR_0010s09370 (11)	scaffold_10:10230252-10231206(+) (11)	NA	Q8LAX0	Homocysteine S-methyltransferase 3	AT3G22740.1	homocysteine S-methyltransferase 3 	LOC_Os10g28630.1	"homocysteine S-methyltransferase protein, putative, expressed"	Medtr5g067080.1	Homocysteine S-methyltransferase 	NA	GO:0008898|homocysteine S-methyltransferase activity	NA
PtpAffx.144596.1.S1_at	A	A1TS	POPTR_0015s10240	POPTR_0015s10240 (11)	scaffold_15:11229962-11230681(+) (11)	NA	Q9DC40	Telomere length regulation protein TEL2 homolog	AT3G48470.1	embryo defective 2423 	LOC_Os02g38680.1	"EMB2423, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144614.1.S1_at	A	A1TS	POPTR_0014s04930	POPTR_0014s04930 (11)	scaffold_14:3815906-3816922(+) (11)	NA	O80513	Cyclin-U4-1	AT2G44740.1	cyclin p4;1 	LOC_Os10g41430.1	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14462.1.A1_s_at	A	A1TS	POPTR_0015s07690	POPTR_0015s07690 (11)	scaffold_15:8989044-8991909(+) (11)	NA	B0JL93	Trigger factor	AT5G55220.1	trigger factor type chaperone family protein 	LOC_Os06g20320.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g101240.1	"Bacterial trigger factor, C-terminal "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process||GO:0015031|protein transport	NA	NA
PtpAffx.144626.1.S1_at	A	A1TS	POPTR_0001s41290	POPTR_0001s41290 (11)	scaffold_1:40910153-40911710(-) (11)	NA	Q99LH1	Nucleolar GTP-binding protein 2	AT1G52980.1	GTP-binding family protein 	LOC_Os03g22890.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.144653.1.S1_at	A	A1TA	POPTR_0007s10490	POPTR_0007s10490 (11)	scaffold_7:10440016-10440332(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr5g016440.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144656.1.S1_s_at	A	A1TS	POPTR_0393s00210	POPTR_0393s00210 (11)	scaffold_393:11416-12237(+) (11)	NA	Q83A83	Cystathionine beta-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.144658.1.S1_at	A	A1TS	POPTR_0014s11380	POPTR_0014s11380 (9)	scaffold_14:8477320-8477705(-) (9)	NA	Q9SIC9	"Pentatricopeptide repeat-containing protein At2g31400, chloroplastic"	AT2G31400.1	genomes uncoupled 1 	LOC_Os12g37550.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015600.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144665.1.S1_at	A	A1TS	POPTR_0017s05880	POPTR_0017s05880 (10)	scaffold_17:4570272-4570561(+) (10)	NA	Q9LX29	Serine/threonine-protein kinase-like protein ACR4	AT3G59420.1	crinkly4 	LOC_Os03g43670.1	"TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr2g118340.1	Protein kinase; TNFR/CD27/30/40/95 cysteine-rich region; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144670.1.S1_at	A	A1TS	POPTR_0018s11750	POPTR_0018s11750 (9)	scaffold_18:12398749-12399083(+) (9)	NA	Q56X72	Reticulon-like protein B21	AT5G58000.1	Reticulon family protein 	LOC_Os08g17870.1	"reticulon domain containing protein, putative, expressed"	Medtr4g108500.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.144673.1.S1_at	A	A1TS	POPTR_0006s13670	POPTR_0006s13670 (11)	scaffold_6:10897024-10897064(+) (11)	NA	Q43062	Pectinesterase/pectinesterase inhibitor PPE8B	AT4G33220.1	pectin methylesterase 44 	LOC_Os08g34900.1	"pectinesterase, putative, expressed"	Medtr2g052320.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.144673.1.S1_s_at	A	A1TS	POPTR_0006s13670	POPTR_0006s13670 (11)	scaffold_6:10897056-10897731(+) (11)	NA	Q43062	Pectinesterase/pectinesterase inhibitor PPE8B	AT4G33220.1	pectin methylesterase 44 	LOC_Os08g34900.1	"pectinesterase, putative, expressed"	Medtr2g052320.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.144674.1.S1_s_at	A	A1TS	POPTR_0006s15000	POPTR_0006s15000 (11)	scaffold_6:12474323-12474853(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G26100.1	casein kinase 1 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr2g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144679.1.S1_at	A	A1TS	POPTR_0002s25950	POPTR_0002s25950 (9)	scaffold_2:22946016-22946325(+) (9)	NA	P27061	Acid phosphatase 1	AT1G04040.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr1g065230.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.1447.2.S1_s_at	A	A1TS	POPTR_0004s13640	POPTR_0004s13640 (11)	scaffold_4:13999250-13999969(+) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1447.3.S1_s_at	A	A1TS	POPTR_0014s02380	POPTR_0014s02380 (11)	scaffold_14:1994386-1994541(-) (11)	NA	Q9LTI3	Mannose-P-dolichol utilization defect 1 protein homolog	AT4G07390.1	Mannose-P-dolichol utilization defect 1 protein 	LOC_Os07g29610.1	"PQ loop repeat domain containing protein, expressed"	Medtr1g023860.1	Cystinosin/ERS1p repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1447.4.A1_s_at	A	A1TS	POPTR_0011s02750	POPTR_0011s02750 (11)	scaffold_11:2689548-2689820(+) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144706.1.S1_at	A	A1TS	POPTR_0008s21090	POPTR_0008s21090 (9)	scaffold_8:15228760-15229221(+) (9)	NA	Q54U75	Cyclic AMP receptor-like protein A	AT1G48270.1	G-protein-coupled receptor 1 	LOC_Os06g09930.1	"G protein coupled receptor, putative, expressed"	Medtr1g019260.1	"GPCR, family 2, secretin-like; cAMP-type GPCR "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144711.1.S1_s_at	A	A1TS	POPTR_0017s00350	POPTR_0017s00350 (11)	scaffold_17:107576-108986(-) (11)	POPTR_0007s00340 (6)	Q8LB01	"Dihydrodipicolinate reductase 2, chloroplastic"	AT3G59890.2	"Dihydrodipicolinate reductase, bacterial/plant "	LOC_Os02g24020.1	"dihydrodipicolinate reductase, putative, expressed"	Medtr4g125890.1	Dihydrodipicolinate reductase 	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009089|lysine biosynthetic process via diaminopimelate||GO:0044281|small molecule metabolic process	GO:0008839|dihydrodipicolinate reductase activity	NA
PtpAffx.144716.1.S1_s_at	A	A1TS	POPTR_0008s06510	POPTR_0008s06510 (11)	scaffold_8:3870882-3871240(+) (11)	NA	NA	NA	AT5G23950.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144732.1.S1_at	A	A1TS	POPTR_0007s14450	POPTR_0007s14450 (11)	scaffold_7:14219894-14220447(+) (11)	NA	NA	NA	AT2G22720.3	SPT2 chromatin protein 	LOC_Os11g19130.1	expressed protein	Medtr5g032140.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144739.1.S1_at	A	A3TS	POPTR_0001s34270	POPTR_0001s34270 (10)//POPTR_0001s26420 (9)//POPTR_0001s34260 (9)	scaffold_1:25450750-25451184(-) (9)//scaffold_1:32423786-32424234(+) (10)//scaffold_1:32428704-32429152(-) (10)	NA	P72854	Sulfite reductase [ferredoxin]	AT5G04590.1	sulfite reductase 	LOC_Os05g42350.1	"ferredoxin--nitrite reductase, putative, expressed"	Medtr4g129810.1	Ferredoxin-nitrite reductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0051536|iron-sulfur cluster binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.144743.1.S1_at	A	A1TS	POPTR_0002s25330	POPTR_0002s25330 (10)	scaffold_2:22431860-22433070(-) (10)	NA	Q01593	B3 domain-containing transcription factor ABI3	AT3G24650.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g68370.3	"B3 DNA binding domain containing protein, expressed"	Medtr7g096720.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.144764.1.S1_at	A	A1TS	POPTR_0018s02860	POPTR_0018s02860 (10)	scaffold_18:2516386-2517639(+) (10)	NA	Q9ZVR5	Putative F-box protein PP2-B2	AT2G02250.1	phloem protein 2-B2 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr1g092930.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144785.1.S1_s_at	A	A1TS	POPTR_0012s08410	POPTR_0012s08410 (11)	scaffold_12:9495975-9496612(+) (11)	NA	NA	NA	AT5G62960.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g03790.1	expressed protein	Medtr3g114140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144787.1.S1_at	A	A1TS	POPTR_0001s15660	POPTR_0001s15660 (9)	scaffold_1:12483605-12484298(-) (9)	NA	NA	NA	AT4G17350.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os10g41060.1	expressed protein	Medtr5g012930.1	"Protein of unknown function DUF828, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144788.1.S1_s_at	A	A1MS	POPTR_0013s11260	POPTR_0013s11260 (11)	scaffold_13:11932199-11932391(-) (11)	NA	Q9LEQ3	Putative cyclic nucleotide-gated ion channel 18	AT5G14870.1	cyclic nucleotide-gated channel 18 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.144789.1.S1_at	A	A1TS	POPTR_0019s07900	POPTR_0019s07900 (11)	scaffold_19:9193460-9197009(+) (11)	NA	Q6P5F9	Exportin-1	AT5G17020.1	exportin 1A 	LOC_Os03g64080.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr4g106960.1	"Importin-beta, N-terminal; "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.14479.1.S1_at	A	A1TS	POPTR_0002s03430	POPTR_0002s03430 (10)	scaffold_2:2120793-2121667(-) (10)	NA	Q93YN9	Inositol-pentakisphosphate 2-kinase	AT1G22100.1	Inositol-pentakisphosphate 2-kinase family protein 	LOC_Os04g56580.1	"inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed"	NA	NA	NA	GO:0035299|inositol pentakisphosphate 2-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144790.1.S1_at	A	A1TS	POPTR_0001s38480	POPTR_0001s38480 (10)	scaffold_1:37601861-37602116(-) (10)	NA	Q8LPR5	Transcription factor TCP4	AT3G15030.3	TCP family transcription factor 4 	LOC_Os01g11550.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144803.1.S1_s_at	A	A1TS	POPTR_0015s03550	POPTR_0015s03550 (11)	scaffold_15:3249789-3252180(-) (11)	NA	Q9LEZ3	Transcription factor BIM1	AT5G08130.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.144806.1.S1_s_at	A	A1TS	POPTR_0002s06850	POPTR_0002s06850 (11)	scaffold_2:4607138-4608618(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g64720.1	expressed protein	Medtr6g038720.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144808.1.S1_s_at	A	A2TS	POPTR_0012s04570	POPTR_0012s04570 (11)//POPTR_0015s04410 (11)	scaffold_12:3865094-3866892(-) (11)//scaffold_15:4565055-4567194(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G73660.1	protein tyrosine kinase family protein 	LOC_Os06g12590.1	"protein kinase, putative, expressed"	Medtr4g155190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144811.1.S1_at	A	A1TS	POPTR_0008s22010	POPTR_0008s22010 (10)	scaffold_8:16356119-16356486(+) (10)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	LOC_Os09g30020.1	"retrotransposon protein, putative, unclassified"	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144812.1.S1_at	A	A1TS	POPTR_0014s03420	POPTR_0014s03420 (11)	scaffold_14:2758709-2759186(+) (11)	NA	NA	NA	AT2G26530.1	Protein of unknown function (DUF1645) 	LOC_Os02g52380.1	"DUF1645 domain containing protein, putative, expressed"	Medtr4g129240.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144818.1.S1_at	A	A1TS	POPTR_0014s15500	POPTR_0014s15500 (10)	scaffold_14:11550967-11552171(-) (10)	NA	NA	NA	AT2G32640.1	Lycopene beta/epsilon cyclase protein 	LOC_Os08g32630.1	"FAD dependent oxidoreductase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14482.1.A1_at	A	A1TS	POPTR_0009s08190	POPTR_0009s08190 (11)	scaffold_9:7535684-7535989(-) (11)	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os03g48060.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	NA	GO:0003824|catalytic activity	NA
PtpAffx.144826.1.S1_at	A	A1TS	POPTR_0006s13360	POPTR_0006s13360 (10)	scaffold_6:10570805-10571328(+) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT2G37080.1	ROP interactive partner 3 	LOC_Os05g03120.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr7g120930.1	"P70 protein, putative "	GO:0016032|viral reproduction	NA	NA
PtpAffx.144828.1.S1_s_at	A	A1TS	POPTR_0013s00420	POPTR_0013s00420 (11)	scaffold_13:172324-172692(-) (11)	NA	Q9LSS7	NEDD8-specific protease 1	AT5G60190.1	Cysteine proteinases superfamily protein 	LOC_Os12g01180.2	"OsWRKY57v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g080150.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.14483.1.S1_at	A	A1TS	POPTR_0006s02680	POPTR_0006s02680 (10)	scaffold_6:1702746-1703200(-) (11)	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144831.1.S1_s_at	A	A1TS	POPTR_0001s10710	POPTR_0001s10710 (11)	scaffold_1:8330108-8331492(+) (11)	POPTR_0003s14090 (7)	Q39828	Dynamin-related protein 5A	AT5G42080.1	dynamin-like protein 	LOC_Os05g48240.1	"dynamin family protein, putative, expressed"	Medtr5g009190.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.144834.1.S1_at	A	A1TS	POPTR_0001s06390	POPTR_0001s06390 (9)	scaffold_1:4895712-4896046(-) (9)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G13810.1	Glutaredoxin family protein 	LOC_Os03g24030.1	"glutaredoxin, putative, expressed"	Medtr3g020120.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.144838.1.S1_s_at	A	A1TS	POPTR_0012s06670	POPTR_0012s06670 (11)	scaffold_12:7063792-7065457(+) (11)	NA	O13046	WD repeat and HMG-box DNA-binding protein 1	AT3G42660.1	transducin family protein / WD-40 repeat family protein 	LOC_Os09g06560.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g074310.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144840.1.S1_at	A	A1TS	POPTR_0003s17720	POPTR_0003s17720 (11)	scaffold_3:17019887-17020435(+) (11)	NA	C0QTM4	30S ribosomal protein S15	AT1G80620.1	"S15/NS1, RNA-binding protein "	LOC_Os06g07996.1	ribosomal protein S15 containing protein	Medtr4g006580.1	"Ribosomal protein S15, bacterial chloroplast and mitochondrial type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.144848.1.S1_at	A	A1TS	POPTR_0009s10620	POPTR_0009s10620 (10)	scaffold_9:9082224-9082732(-) (10)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.144850.1.S1_at	A	A1TS	POPTR_0013s06760	POPTR_0013s06760 (11)	scaffold_13:5469364-5471078(-) (11)	NA	Q946J8	Chromo domain-containing protein LHP1	AT5G17690.1	like heterochromatin protein (LHP1) 	LOC_Os10g17770.1	"chromo domain-containing protein LHP1, putative, expressed"	Medtr3g163840.1	Chromo; Chromo shadow 	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.144850.2.S1_a_at	A	A2TS	POPTR_0013s06760	POPTR_0013s06760 (11)//POPTR_0019s06120 (11)	scaffold_13:5471263-5471712(-) (11)//scaffold_19:6660770-6661243(+) (11)	NA	Q946J8	Chromo domain-containing protein LHP1	AT5G17690.1	like heterochromatin protein (LHP1) 	LOC_Os10g17770.1	"chromo domain-containing protein LHP1, putative, expressed"	Medtr3g163840.1	Chromo; Chromo shadow 	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.144850.2.S1_at	A	A1TS	POPTR_0019s06120	POPTR_0019s06120 (10)	scaffold_19:6660656-6661947(+) (10)	NA	Q946J8	Chromo domain-containing protein LHP1	AT5G17690.1	like heterochromatin protein (LHP1) 	LOC_Os10g17770.1	"chromo domain-containing protein LHP1, putative, expressed"	Medtr3g163840.1	Chromo; Chromo shadow 	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.144866.1.S1_at	A	A1MA	POPTR_0013s04020	POPTR_0013s04020 (10)	scaffold_13:2650995-2651520(-) (10)	NA	O22969	Uncharacterized protein At2g34160	AT3G04620.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.144880.1.S1_s_at	A	A1TS	POPTR_0019s15160	POPTR_0019s15160 (11)	scaffold_19:15732668-15733113(-) (11)	NA	NA	NA	AT2G30500.2	Kinase interacting (KIP1-like) family protein 	LOC_Os01g07370.2	"KIP1, putative, expressed"	Medtr5g083340.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144905.1.S1_at	A	A1TS	POPTR_0002s03950	POPTR_0002s03950 (9)	scaffold_2:2473414-2473859(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144914.1.S1_s_at	A	A1TS	POPTR_0015s01250	POPTR_0015s01250 (11)	scaffold_15:785283-786378(+) (11)	NA	Q9STP8	Acyl-CoA-binding domain-containing protein 2	AT4G27780.1	acyl-CoA binding protein 2 	LOC_Os04g58550.1	"acyl-CoA-binding domain-containing protein 6, putative, expressed"	Medtr5g046490.1	Ankyrin 	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.144919.1.S1_at	A	A1TS	POPTR_0005s01960	POPTR_0005s01960 (11)	scaffold_5:1273863-1274412(-) (11)	NA	NA	NA	AT5G26910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1); Has 1322 Blast hits to 684 proteins in 162 species: Archae - 4; Bacteria - 497; Metazoa - 157; Fungi - 101; Plants - 155; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink). 	LOC_Os03g19080.3	expressed protein	Medtr2g038920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14494.1.A1_at	A	A1TS	POPTR_0102s00220	POPTR_0102s00220 (10)	scaffold_102:35795-36483(-) (10)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os11g39990.1	"patatin, putative, expressed"	Medtr5g017680.1	"Patatin; Serine/threonine protein kinase, active site "	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.144977.1.S1_at	A	A1TS	POPTR_0001s45210	POPTR_0001s45210 (11)	scaffold_1:45644765-45646815(+) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140400.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.14498.1.A1_at	A	A1TS	POPTR_0018s05820	POPTR_0018s05820 (9)	scaffold_18:5454265-5454586(+) (9)	POPTR_0006s16250 (7)	O22714	Pentatricopeptide repeat-containing protein At1g60770	AT1G60770.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g25410.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g106520.1	Asparaginase/glutaminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144993.1.A1_at	A	A1MS	POPTR_0006s04790	POPTR_0006s04790 (9)	scaffold_6:3328119-3328276(-) (9)	NA	Q84M24	ABC transporter A family member 1	AT2G41700.1	ATP-binding cassette A1 	LOC_Os06g38950.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g112400.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.144999.1.A1_s_at	A	A1TS	POPTR_0013s08250	POPTR_0013s08250 (11)	scaffold_13:7293365-7293890(+) (11)	NA	P73387	Ycf60-like protein	AT2G47840.1	Uncharacterised conserved protein ycf60 	LOC_Os02g49470.1	"tic20 protein-related, putative, expressed"	Medtr7g089930.1	"Uncharacterized protein ycf60, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145.1.A1_at	A	A2TS	POPTR_0388s00210	POPTR_0388s00210 (11)//POPTR_0019s10160 (10)	scaffold_19:11737827-11738923(-) (10)//scaffold_388:14117-15208(-) (11)	NA	Q9HCG7	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086910.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.14501.1.S1_at	A	A1TS	POPTR_0001s27250	POPTR_0001s27250 (11)	scaffold_1:26137814-26138635(-) (11)	NA	Q8RUN2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1	AT2G28305.1	Putative lysine decarboxylase family protein 	LOC_Os04g43840.1	"possible lysine decarboxylase domain containing protein, expressed"	Medtr1g019920.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145060.1.A1_at	A	A1TS	POPTR_0005s10510	POPTR_0005s10510 (11)	scaffold_5:7558007-7559318(-) (11)	NA	P36616	Protein kinase dsk1	AT4G35500.1	Protein kinase superfamily protein 	LOC_Os09g37949.1	"serine/threonine-protein kinase SRPK1, putative, expressed"	Medtr5g024280.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.145066.1.A1_at	A	A1TS	POPTR_0008s20320	POPTR_0008s20320 (9)	scaffold_8:14070753-14071425(-) (9)	NA	Q7XJ53	Probable protein phosphatase 2C 35	AT3G06270.1	Protein phosphatase 2C family protein 	LOC_Os02g17970.2	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g026070.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1451.1.S1_at	A	A1TS	POPTR_0014s09240	POPTR_0014s09240 (11)	scaffold_14:6867317-6867954(-) (11)	NA	Q5RFF6	Chitinase domain-containing protein 1	AT4G01040.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g43220.1	"chitinase domain-containing protein 1 precursor, putative, expressed"	Medtr5g025520.1	"Glycoside hydrolase, family 18 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145195.1.A1_at	A	A1TS	POPTR_0014s05430	POPTR_0014s05430 (11)	scaffold_14:4036501-4036777(-) (9)//scaffold_14:4066529-4066805(-) (11)	POPTR_0014s05380 (8)	NA	NA	AT3G60450.1	Phosphoglycerate mutase family protein 	LOC_Os03g01180.1	"phosphoglycerate mutase, putative, expressed"	Medtr8g006090.1	PRIB5 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14522.1.S1_at	A	A1MS	POPTR_0015s12430	POPTR_0015s12430 (9)	scaffold_15:12679354-12679910(-) (9)	NA	A8QAN4	Protein SEY1	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os01g39310.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145232.1.A1_at	A	A1TS	POPTR_0008s11910	POPTR_0008s11910 (11)	scaffold_8:7657795-7658982(-) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G68540.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g03670.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g067120.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.145251.1.A1_at	A	A1MS	POPTR_0001s24130	POPTR_0001s24130 (10)	scaffold_1:23503090-23503416(-) (10)	NA	O54922	Exocyst complex component 7	AT3G09520.1	exocyst subunit exo70 family protein H4 	LOC_Os09g26820.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr4g079170.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.145273.2.A1_a_at	A	A1TS	POPTR_0005s17260	POPTR_0005s17260 (11)	scaffold_5:14490501-14490757(+) (11)	NA	Q2KJ44	Serine/threonine-protein phosphatase 2A activator	AT4G08960.1	phosphotyrosyl phosphatase activator (PTPA) family protein 	LOC_Os06g11640.1	"serine/threonine-protein phosphatase 2A activator 2, putative, expressed"	Medtr4g069930.1	"Phosphotyrosyl phosphatase activator, PTPA "	NA	GO:0019211|phosphatase activator activity	NA
PtpAffx.145273.2.A1_at	A	A1TS	POPTR_0005s17260	POPTR_0005s17260 (9)	scaffold_5:14488249-14490516(+) (9)	NA	Q2KJ44	Serine/threonine-protein phosphatase 2A activator	AT4G08960.1	phosphotyrosyl phosphatase activator (PTPA) family protein 	LOC_Os06g11640.1	"serine/threonine-protein phosphatase 2A activator 2, putative, expressed"	Medtr4g069930.1	"Phosphotyrosyl phosphatase activator, PTPA "	NA	GO:0019211|phosphatase activator activity	NA
PtpAffx.14528.1.A1_a_at	A	A1TS	POPTR_0003s05270	POPTR_0003s05270 (11)	scaffold_3:6498059-6498141(-) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.14528.1.A1_at	A	A1TS	POPTR_0003s05270	POPTR_0003s05270 (11)	scaffold_3:6497785-6498247(-) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.145283.1.A1_at	A	A1TS	POPTR_0012s14220	POPTR_0012s14220 (11)	scaffold_12:14187180-14187724(-) (11)	NA	Q7XJ98	Xyloglucan galactosyltransferase KATAMARI1	AT5G62220.1	glycosyltransferase 18 	LOC_Os04g48480.1	"exostosin family domain containing protein, expressed"	Medtr1g130380.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.145291.1.A1_at	A	A1TS	POPTR_0010s08410	POPTR_0010s08410 (11)	scaffold_10:9331916-9332084(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.145296.1.A1_a_at	A	A1TS	POPTR_0003s16240	POPTR_0003s16240 (9)	scaffold_3:15824124-15824341(+) (11)	NA	NA	NA	AT1G28100.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os10g35644.1	expressed protein	AC235677_28.1	hypothetical protein AC235677.1 126634-128282 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145299.1.A1_at	A	A1TS	POPTR_0017s13610	POPTR_0017s13610 (10)	scaffold_17:13727373-13728184(+) (10)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.145306.1.A1_s_at	A	A9TS	POPTR_0016s04350	POPTR_0016s04390 (9)//POPTR_0016s04740 (9)//POPTR_0016s04380 (9)//POPTR_0016s04400 (9)//POPTR_0016s04770 (9)//POPTR_0016s04350 (9)//POPTR_0016s04760 (9)//POPTR_0016s04640 (9)//POPTR_0016s04780 (9)	scaffold_16:2544141-2544176(+) (9)//scaffold_16:2571347-2571382(+) (9)//scaffold_16:2575741-2575776(+) (9)//scaffold_16:2586009-2586044(+) (9)//scaffold_16:2720771-2720806(-) (9)//scaffold_16:2828518-2828553(-) (9)//scaffold_16:2844533-2844568(-) (9)//scaffold_16:2852213-2852248(-) (9)//scaffold_16:2852541-2852576(-) (9)//scaffold_16:2860320-2860355(-) (9)	POPTR_0016s04360 (6)	NA	NA	AT5G22355.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g42030.1	"DC1 domain-containing protein, putative"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008270|zinc ion binding	NA
PtpAffx.14532.1.A1_at	A	A1TS	POPTR_0005s06590	POPTR_0005s06590 (9)	scaffold_5:4412606-4412987(-) (9)	POPTR_0005s06630 (8)	NA	NA	AT5G64020.1	TRICHOME BIREFRINGENCE-LIKE 14 	LOC_Os11g13800.2	expressed protein	Medtr4g143010.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145327.1.A1_at	A	A1TS	POPTR_0016s14350	POPTR_0016s14350 (9)	scaffold_16:13590118-13590341(-) (9)	NA	Q6Z3U3	B3 domain-containing protein Os07g0679700	AT4G32010.1	HSI2-like 1 	LOC_Os07g48200.1	"B3 DNA binding domain containing protein, putative, expressed"	Medtr4g036540.1	"Transcriptional factor B3; Zinc finger, CW-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.145334.1.A1_at	A	A1TS	POPTR_0010s20020	POPTR_0010s20020 (11)	scaffold_10:17768961-17769125(+) (11)	NA	NA	NA	AT2G39950.1	unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). 	LOC_Os07g01060.1	expressed protein	Medtr5g089220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145341.1.A1_at	A	A1TS	POPTR_0001s16500	POPTR_0001s16500 (11)	scaffold_1:13297702-13297997(+) (11)	NA	B1LCI2	Chaperone protein dnaJ	AT3G14200.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g54130.2	"heat shock protein DnaJ, putative, expressed"	Medtr8g025850.2	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.145369.1.A1_at	A	A1TS	POPTR_0009s07120	POPTR_0009s07120 (10)	scaffold_9:6735058-6735864(-) (10)	NA	NA	NA	AT2G26770.2	plectin-related 	LOC_Os01g59130.2	"proline-rich family protein, putative, expressed"	Medtr5g095960.1	"3'-5'-exoribonuclease/ RNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145392.1.A1_at	A	A1TS	POPTR_0011s14130	POPTR_0011s14130 (10)	scaffold_11:16666986-16667321(-) (10)	NA	Q9LJU7	Purple acid phosphatase 18	AT3G20500.1	purple acid phosphatase 18 	LOC_Os03g37130.1	"ATPAP18/PAP18, putative, expressed"	Medtr3g068290.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.145393.1.A1_at	A	A1TS	POPTR_0010s16130	POPTR_0010s16130 (11)	scaffold_10:15154055-15154407(-) (11)	NA	Q9LNF4	Probable protein phosphatase 2C 13	AT1G48040.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037290.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145393.2.A1_at	A	A1TS	POPTR_0008s10010	POPTR_0008s10010 (9)	scaffold_8:6243700-6243926(+) (9)	NA	Q9LNF4	Probable protein phosphatase 2C 13	AT1G48040.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037290.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145397.1.A1_s_at	A	A2TS	POPTR_0004s21970	POPTR_0004s21980 (11)//POPTR_0004s21970 (11)	scaffold_4:20911123-20913220(-) (11)//scaffold_4:20924520-20926620(-) (11)	NA	Q9SAR5	Ankyrin repeat domain-containing protein 2	AT2G17390.1	ankyrin repeat-containing 2B 	LOC_Os09g33810.2	"ankyrin repeat domain containing protein, putative, expressed"	Medtr3g154100.1	"Ankyrin repeat domain-containing protein 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145399.1.S1_at	A	A1TS	POPTR_0001s46110	POPTR_0001s46110 (9)	scaffold_1:46574527-46574923(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1454.1.S1_a_at	A	A1TS	POPTR_0009s06730	POPTR_0009s06730 (11)	scaffold_9:6447682-6448000(+) (11)	NA	Q5ZA07	E3 ubiquitin-protein ligase makorin	AT3G08505.1	zinc finger (CCCH-type/C3HC4-type RING finger) family protein 	LOC_Os06g21390.2	"Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed"	Medtr3g030250.1	"Zinc finger, CCCH-type; Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.145406.1.S1_at	A	A1TS	POPTR_0005s23330	POPTR_0005s23330 (9)	scaffold_5:22148041-22150672(-) (11)	NA	Q9M1W7	F-box/kelch-repeat protein SKIP30	AT3G63220.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145411.1.S1_at	A	A1TS	POPTR_0009s08400	POPTR_0009s08400 (11)	scaffold_9:7702662-7704580(-) (11)	NA	Q6GLP4	Protein RMD5 homolog A	AT4G37880.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os06g38940.2	"RMD5 homolog A, putative, expressed"	Medtr2g010250.1	"Zinc finger, RING-type; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145417.1.S1_at	A	A1TS	POPTR_0014s01950	POPTR_0014s01950 (10)	scaffold_14:1748264-1748907(-) (10)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145419.1.S1_at	A	A1TS	POPTR_0008s05650	POPTR_0008s05650 (10)	scaffold_8:3285249-3286144(+) (10)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os05g02020.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.145426.1.S1_at	A	A1TS	POPTR_0001s38950	POPTR_0001s38950 (11)	scaffold_1:38201177-38201554(-) (11)	NA	P72580	Prenyl transferase	AT1G78510.1	solanesyl diphosphate synthase 1 	LOC_Os05g50550.1	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.145430.1.S1_at	A	A1TS	POPTR_0003s09370	POPTR_0003s09370 (10)	scaffold_3:10672893-10674687(+) (10)	NA	Q40152	Heat shock factor protein HSF8	AT1G32330.1	heat shock transcription factor A1D 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.145434.2.A1_at	A	A1TS	POPTR_0001s40770	POPTR_0001s40770 (9)	scaffold_1:40353159-40353680(-) (9)	NA	O80340	Ethylene-responsive transcription factor 4	AT3G15210.1	ethylene responsive element binding factor 4 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.14544.1.S1_at	A	A1TS	POPTR_0010s11510	POPTR_0010s11510 (11)	scaffold_10:11751617-11751723(+) (11)	NA	Q94AH8	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6"	AT1G68020.2	UDP-Glycosyltransferase / trehalose-phosphatase family protein 	LOC_Os09g23350.1	"trehalose synthase, putative, expressed"	Medtr4g156760.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.145475.1.S1_at	A	A1TS	POPTR_0004s06330	POPTR_0004s06330 (10)	scaffold_4:5037985-5039100(-) (10)	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.145485.1.S1_at	A	A1TS	POPTR_0012s10930	POPTR_0012s10930 (11)	scaffold_12:11592736-11593182(-) (11)	NA	Q6TNS2	p21-activated protein kinase-interacting protein 1-like	AT1G65030.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g42150.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g056250.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145486.1.S1_at	A	A1TS	POPTR_0010s13710	POPTR_0010s13710 (9)	scaffold_10:13485732-13486240(+) (9)	NA	Q54I39	IST1-like protein	AT1G13340.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os03g50210.1	"DUF292 domain containing protein, expressed"	Medtr6g093400.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14549.1.S1_at	A	A2TS	POPTR_0010s21210	POPTR_0749s00210 (10)//POPTR_0010s21210 (10)	scaffold_10:18578448-18583967(+) (11)//scaffold_749:309-4689(+) (10)	POPTR_0010s21220 (6)	NA	NA	AT2G16050.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os09g20150.1	C1-like domain containing protein	Medtr7g026240.1	DC1; C1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145502.1.S1_at	A	A1TS	POPTR_0003s16670	POPTR_0003s16670 (11)	scaffold_3:16219008-16219720(-) (11)	NA	NA	NA	AT5G13100.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g01295.1	expressed protein	Medtr7g022340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145502.2.A1_at	A	A1TS	POPTR_0001s13530	POPTR_0001s13530 (11)	scaffold_1:10604871-10606750(-) (11)	NA	NA	NA	AT5G13100.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g01295.1	expressed protein	Medtr7g022340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145508.1.S1_at	A	A1TS	POPTR_0001s37550	POPTR_0001s37550 (9)	scaffold_1:36512966-36514927(+) (9)	NA	Q8LBL1	Calcium-activated outward-rectifying potassium channel 1	AT5G55630.2	Outward rectifying potassium channel protein 	LOC_Os03g54100.2	"potassium channel protein, putative, expressed"	Medtr5g103230.1	"Calcium-activated outward-rectifying potassium channel 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145511.1.S1_at	A	A1TS	POPTR_0001s30980	POPTR_0001s30980 (11)	scaffold_1:29397423-29397945(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145512.1.S1_at	A	A1TS	POPTR_0005s01840	POPTR_0005s01840 (11)	scaffold_5:1224223-1225366(+) (11)	NA	P31414	Pyrophosphate-energized vacuolar membrane proton pump 1	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.145514.1.S1_at	A	A1TS	POPTR_0001s25590	POPTR_0001s25590 (11)	scaffold_1:24666113-24666919(+) (11)	POPTR_0009s04730 (8)	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145516.1.S1_s_at	A	A1TS	POPTR_0001s38450	POPTR_0001s38450 (11)	scaffold_1:37567548-37573406(+) (11)	NA	NA	NA	AT1G53210.1	sodium/calcium exchanger family protein / calcium-binding EF hand family protein 	LOC_Os02g14980.1	"calcium-binding EF hand family protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.14553.1.S1_at	A	A1TS	POPTR_0009s12280	POPTR_0009s12280 (11)	scaffold_9:10056018-10056545(+) (11)	NA	NA	NA	AT4G39140.5	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145531.1.S1_at	A	A1TS	POPTR_0001s30710	POPTR_0001s30710 (11)	scaffold_1:29181165-29182293(-) (11)	NA	Q9C6D2	Methylthioribose kinase	AT1G49820.1	S-methyl-5-thioribose kinase 	LOC_Os04g57400.1	"methylthioribose kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145538.1.S1_at	A	A1TS	POPTR_0018s11180	POPTR_0018s11180 (11)	scaffold_18:11973047-11973658(+) (11)	NA	NA	NA	AT4G30780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145558.1.S1_a_at	A	A1TS	POPTR_0019s07620	POPTR_0019s07620 (11)	scaffold_19:8697115-8697291(-) (11)	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.145560.1.S1_at	A	A1TS	POPTR_0004s09140	POPTR_0004s09140 (10)	scaffold_4:7640278-7641481(-) (10)	NA	Q9UKZ1	UPF0760 protein C2orf29	AT5G18420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g13694.1	"AGAP007117-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145592.1.S1_at	A	A1TS	POPTR_0018s06900	POPTR_0018s06900 (11)	scaffold_18:6990549-6992368(-) (11)	NA	O23969	Pollen-specific protein SF21	AT5G56750.1	N-MYC downregulated-like 1 	LOC_Os02g13150.1	"pollen-specific protein SF21, putative, expressed"	Medtr4g160760.1	Ndr 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145596.1.S1_at	A	A1TS	POPTR_0008s06960	POPTR_0008s06960 (10)	scaffold_8:4207677-4207780(-) (10)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.145636.1.S1_at	A	A1TS	POPTR_0016s14900	POPTR_0016s14900 (11)	scaffold_16:13987653-13987904(-) (11)	NA	NA	NA	AT3G54200.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os06g32970.1	harpin-induced protein 1 domain containing protein	Medtr8g005060.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.145643.1.S1_at	A	A1TS	POPTR_0011s14890	POPTR_0011s14890 (10)	scaffold_11:17141272-17142561(-) (10)	NA	Q9ASU1	Diacylglycerol O-acyltransferase 2	AT3G51520.1	diacylglycerol acyltransferase family 	LOC_Os06g22080.1	"diacylglycerol O-acyltransferase, putative, expressed"	Medtr5g024950.1	Diacylglycerol acyltransferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.14565.1.S1_at	A	A1TS	POPTR_0018s06880	POPTR_0018s06880 (11)	scaffold_18:6960832-6961268(-) (11)	NA	Q9ZUP2	"DNA repair protein recA homolog 3, mitochondrial"	AT2G19490.1	recA DNA recombination family protein 	LOC_Os01g67510.1	"recA protein, putative, expressed"	Medtr2g046210.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145701.1.S1_s_at	A	A1TS	POPTR_0001s44970	POPTR_0001s44970 (11)	scaffold_1:45290206-45291178(-) (11)	NA	Q9LJU7	Purple acid phosphatase 18	AT3G20500.1	purple acid phosphatase 18 	LOC_Os03g37130.1	"ATPAP18/PAP18, putative, expressed"	Medtr3g068290.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.145719.2.S1_a_at	A	A1MS	POPTR_0006s27100	POPTR_0006s27100 (11)	scaffold_6:25106051-25106615(-) (11)	NA	Q55AX0	Dynamin-like protein C	AT3G19720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g07880.1	"dynamin family protein, putative, expressed"	AC235758_24.1	Dynamin central region; Dynamin; Dynamin GTPase effector AC235758.1 170271-163793 H EGN_Mt090430 200	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.145719.3.S1_a_at	A	A1TS	POPTR_0006s27100	POPTR_0006s27100 (11)	scaffold_6:25106294-25106341(-) (11)	NA	Q55AX0	Dynamin-like protein C	AT3G19720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g07880.1	"dynamin family protein, putative, expressed"	AC235758_24.1	Dynamin central region; Dynamin; Dynamin GTPase effector AC235758.1 170271-163793 H EGN_Mt090430 200	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.145719.3.S1_at	A	A1TS	POPTR_0006s27100	POPTR_0006s27100 (11)	scaffold_6:25105493-25105782(-) (11)	NA	Q55AX0	Dynamin-like protein C	AT3G19720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g07880.1	"dynamin family protein, putative, expressed"	AC235758_24.1	Dynamin central region; Dynamin; Dynamin GTPase effector AC235758.1 170271-163793 H EGN_Mt090430 200	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.14572.1.S1_a_at	A	A2TS	POPTR_0004s09700	POPTR_0004s09700 (11)//POPTR_0005s15450 (11)	scaffold_4:8214383-8215078(-) (11)//scaffold_5:12116959-12117642(-) (11)	NA	Q56ZZ7	Plastidic glucose transporter 4	AT5G16150.3	plastidic GLC translocator 	LOC_Os01g04190.2	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.14572.1.S1_at	A	A1TS	POPTR_0004s09700	POPTR_0004s09700 (11)	scaffold_4:8214135-8214389(-) (11)	NA	Q56ZZ7	Plastidic glucose transporter 4	AT5G16150.3	plastidic GLC translocator 	LOC_Os01g04190.2	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.14572.2.S1_a_at	A	A1TS	POPTR_0005s15450	POPTR_0005s15450 (11)	scaffold_5:12116675-12117042(-) (11)	NA	Q56ZZ7	Plastidic glucose transporter 4	AT5G16150.3	plastidic GLC translocator 	LOC_Os01g04190.3	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.145771.1.A1_s_at	A	A1TS	POPTR_0014s03580	POPTR_0014s03580 (11)	scaffold_14:2863592-2863960(+) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os12g30040.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr2g014200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145773.1.S1_at	A	A2TS	POPTR_0013s12740	POPTR_0013s12740 (11)//POPTR_0019s12230 (11)	scaffold_13:13425142-13425527(-) (11)//scaffold_19:13327370-13327763(+) (11)	NA	Q40521	Ras-related protein Rab11B	AT5G60860.1	RAB GTPase homolog A1F 	LOC_Os05g48980.1	"ras-related protein, putative, expressed"	Medtr4g109180.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.145798.1.S1_at	A	A1MS	POPTR_0013s08610	POPTR_0013s08610 (11)	scaffold_13:8004733-8005034(+) (11)	NA	O48921	"Cytochrome P450 97B2, chloroplastic"	AT1G31800.1	"cytochrome P450, family 97, subfamily A, polypeptide 3 "	LOC_Os02g57290.4	"cytochrome P450, putative, expressed"	Medtr7g089220.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.1458.1.S1_at	A	A1TS	POPTR_0014s09860	POPTR_0014s09860 (11)	scaffold_14:7378747-7379024(-) (11)	NA	P46897	Homeobox-leucine zipper protein ATHB-7	AT2G46680.1	homeobox 7 	LOC_Os09g35910.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g029340.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.145807.1.S1_at	A	A1TS	POPTR_0002s20260	POPTR_0002s20260 (11)	scaffold_2:16212118-16214136(+) (11)	NA	O81122	Ethylene receptor	AT2G40940.1	ethylene response sensor 1 	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.145837.1.S1_s_at	A	A1TS	POPTR_0007s14200	POPTR_0007s14200 (11)	scaffold_7:14052840-14054810(+) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G65530.1	Protein kinase superfamily protein 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr5g033220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14585.2.S1_a_at	A	A1TS	POPTR_0009s03300	POPTR_0009s03300 (11)	scaffold_9:3968559-3971537(-) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.14585.3.S1_at	A	A1TS	POPTR_0001s24290	POPTR_0001s24290 (11)	scaffold_1:23618181-23618427(-) (11)	NA	P28186	Ras-related protein ARA-3	AT5G59840.1	Ras-related small GTP-binding family protein 	LOC_Os05g38630.2	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.145868.1.S1_s_at	A	A2TS	POPTR_0010s02520	POPTR_0010s02520 (11)//POPTR_0034s00260 (11)	scaffold_10:2939998-2940114(+) (11)//scaffold_34:145620-145736(+) (11)	NA	A4QND5	60S ribosome subunit biogenesis protein NIP7 homolog	AT4G15770.1	RNA binding 	LOC_Os07g47420.1	"60S ribosome subunit biogenesis protein NIP7, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14587.1.A1_at	A	A1TS	POPTR_0006s10820	POPTR_0006s10820 (11)	scaffold_6:8211946-8212383(-) (11)	NA	NA	NA	AT1G06920.1	ovate family protein 4 	LOC_Os01g60810.1	"DUF623 domain containing protein, expressed"	Medtr7g079930.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14589.1.S1_at	A	A1TS	POPTR_0007s00220	POPTR_0007s00220 (10)	scaffold_7:25352-25964(+) (10)	NA	A2Q1V6	Cysteine protease ATG4	AT2G44140.1	Peptidase family C54 protein 	LOC_Os04g58560.1	"cysteine protease ATG4, putative, expressed"	Medtr7g092800.1	Peptidase C54 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145893.1.S1_at	A	A1TS	POPTR_0014s03570	POPTR_0014s03570 (11)	scaffold_14:2849307-2849863(-) (11)	NA	O04348	"Thylakoidal processing peptidase 1, chloroplastic"	AT2G30440.1	thylakoid processing peptide 	LOC_Os09g28000.1	"OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr3g148730.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1459.1.A1_s_at	A	A1TS	POPTR_0012s08330	POPTR_0012s08330 (11)	scaffold_12:9406124-9408683(-) (11)	NA	Q9D7P6	"Iron-sulfur cluster assembly enzyme ISCU, mitochondrial"	AT4G22220.1	SufE/NifU family protein 	LOC_Os01g47340.1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"	Medtr3g114000.1	FeS cluster assembly scaffold IscU 	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.1459.1.A1_x_at	A	A1TS	POPTR_0012s08330	POPTR_0012s08330 (11)	scaffold_12:9405847-9406293(-) (11)	NA	Q9D7P6	"Iron-sulfur cluster assembly enzyme ISCU, mitochondrial"	AT4G22220.1	SufE/NifU family protein 	LOC_Os01g47340.1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"	Medtr3g114000.1	FeS cluster assembly scaffold IscU 	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.1459.3.A1_a_at	A	A1TS	POPTR_0015s08860	POPTR_0015s08860 (11)	scaffold_15:10208221-10208547(-) (11)	NA	Q9D7P6	"Iron-sulfur cluster assembly enzyme ISCU, mitochondrial"	AT4G22220.1	SufE/NifU family protein 	LOC_Os01g47340.1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"	Medtr3g114000.1	FeS cluster assembly scaffold IscU 	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.1459.4.S1_a_at	A	A1TS	POPTR_0015s08850	POPTR_0015s08850 (11)	scaffold_15:10201841-10202063(-) (11)	NA	Q12056	"Iron sulfur cluster assembly protein 2, mitochondrial"	AT4G22220.1	SufE/NifU family protein 	LOC_Os01g47340.1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"	Medtr3g114000.1	FeS cluster assembly scaffold IscU 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14590.1.A1_at	A	A1TS	POPTR_0005s18880	POPTR_0005s18880 (9)	scaffold_5:17284426-17284950(-) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr8g099260.1	"Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.145919.1.S1_s_at	A	A1TS	POPTR_0002s02100	POPTR_0002s02100 (11)	scaffold_2:1136006-1136325(-) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.145921.1.S1_at	A	A1TS	POPTR_0002s13810	POPTR_0002s13810 (9)	scaffold_2:10227469-10227895(-) (9)	NA	Q20390	Palmitoyl-protein thioesterase 1	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g01150.2	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008474|palmitoyl-(protein) hydrolase activity	NA
PtpAffx.145921.2.S1_a_at	A	A1TS	POPTR_0002s13810	POPTR_0002s13810 (11)	scaffold_2:10228793-10231607(-) (11)	NA	Q20390	Palmitoyl-protein thioesterase 1	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g01150.2	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008474|palmitoyl-(protein) hydrolase activity	NA
PtpAffx.145936.1.S1_at	A	A1TS	POPTR_1788s00200	POPTR_1788s00200 (11)	scaffold_1788:3136-3381(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145960.1.A1_at	A	A1TS	POPTR_0012s12910	POPTR_0012s12910 (11)	scaffold_12:13275334-13276522(-) (11)	NA	Q5N2J3	Sec-independent protein translocase protein tatA/E homolog	AT5G52440.1	Bacterial sec-independent translocation protein mttA/Hcf106 	LOC_Os11g37130.1	"mttA/Hcf106 family protein, putative, expressed"	Medtr1g126690.1	Twin-arginine translocation protein TatA/E 	GO:0015031|protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.145974.1.A1_at	A	A1TS	POPTR_0016s02270	POPTR_0016s02270 (11)	scaffold_16:1098834-1107906(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145980.1.S1_s_at	A	A1TS	POPTR_0013s11520	POPTR_0013s11520 (11)	scaffold_13:12136275-12138720(-) (11)	NA	NA	NA	AT4G09510.1	cytosolic invertase 2 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145983.1.S1_at	A	A1TS	POPTR_0002s11520	POPTR_0002s11520 (11)	scaffold_2:8574423-8576678(+) (11)	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.145992.1.S1_at	A	A1TS	POPTR_0019s01580	POPTR_0019s01580 (11)	scaffold_19:1400987-1402740(+) (11)	NA	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G63710.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g49620.5	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr4g144240.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.145996.1.S1_at	A	A1TS	POPTR_0007s06500	POPTR_0007s06500 (9)	scaffold_7:4868415-4869564(-) (9)	NA	NA	NA	AT5G10010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). 	LOC_Os04g56590.1	"ATP/GTP binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145997.1.S1_at	A	A1TS	POPTR_0001s11890	POPTR_0001s11890 (10)	scaffold_1:9215352-9216047(-) (10)	NA	NA	NA	AT2G02370.2	SNARE associated Golgi protein family 	LOC_Os03g25750.1	"SNARE associated Golgi protein, putative, expressed"	Medtr2g034030.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145998.1.S1_at	A	A1TS	POPTR_0018s01110	POPTR_0018s01110 (10)	scaffold_18:1008017-1008389(-) (10)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT4G32600.1	RING/U-box superfamily protein 	LOC_Os05g08610.4	"zinc finger family protein, putative, expressed"	Medtr1g012860.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1460.1.S1_at	A	A1TS	POPTR_0001s18990	POPTR_0001s18990 (11)	scaffold_1:16240265-16240839(+) (11)	NA	P40234	Casein kinase I homolog 2	AT2G25760.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g008170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14600.1.S1_at	A	A1MA	POPTR_0004s19870	POPTR_0004s19870 (9)	scaffold_4:19557338-19557850(+) (9)	POPTR_0004s19830 (6)	Q9SD53	UPF0481 protein At3g47200	AT5G22540.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146006.1.S1_at	A	A1TS	POPTR_0005s08240	POPTR_0005s08240 (10)	scaffold_5:5677449-5680168(+) (10)	NA	Q9NQG5	Regulation of nuclear pre-mRNA domain-containing protein 1B	AT5G65180.1	ENTH/VHS family protein 	LOC_Os04g54420.1	"protein of unknown function, DUF618 domain containing protein, expressed"	Medtr3g101010.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146007.1.S1_at	A	A1TS	POPTR_0014s16870	POPTR_0014s16870 (10)	scaffold_14:12992577-12992837(-) (10)	NA	Q9SSE5	Zinc finger protein CONSTANS-LIKE 9	AT3G07650.4	CONSTANS-like 9 	LOC_Os06g19444.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr3g106670.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.14602.1.S1_at	A	A1TS	POPTR_0005s21550	POPTR_0005s21550 (11)	scaffold_5:20676689-20676732(+) (11)	NA	Q6NPF9	"Thioredoxin Y1, chloroplastic"	AT1G76760.1	thioredoxin Y1 	LOC_Os01g73234.2	"thioredoxin, putative, expressed"	Medtr1g125070.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.146022.1.A1_at	A	A1TS	POPTR_0002s00770	POPTR_0002s00770 (11)	scaffold_2:353359-353780(-) (11)	NA	NA	NA	AT1G20830.1	multiple chloroplast division site 1 	LOC_Os04g49540.1	expressed protein	Medtr3g159930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146028.1.S1_at	A	A1TS	POPTR_0002s23910	POPTR_0002s23910 (11)	scaffold_2:21389580-21390472(-) (11)	NA	NA	NA	AT5G13970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g32580.1	expressed protein	Medtr7g097090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146048.1.A1_at	A	A1TS	POPTR_0004s01710	POPTR_0004s01710 (11)	scaffold_4:1025658-1026484(-) (11)	NA	P62283	Abnormal spindle-like microcephaly-associated protein homolog	AT4G21820.1	binding;calmodulin binding 	LOC_Os07g33370.1	"IQ calmodulin-binding motif family protein, expressed"	Medtr8g146600.1	IQ calmodulin-binding region; Calponin-like actin-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146050.1.S1_s_at	A	A1TS	POPTR_0006s22530	POPTR_0006s22530 (11)	scaffold_6:21528453-21529868(+) (11)	NA	O82039	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	AT3G11540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44510.1	"UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146058.1.A1_at	A	A1TS	POPTR_0012s08280	POPTR_0012s08280 (11)	scaffold_12:9357641-9358122(+) (11)	NA	Q9FM03	Dof zinc finger protein DOF5.6	AT5G62940.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr3g113950.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.146058.2.A1_at	A	A1TS	POPTR_0012s08290	POPTR_0012s08290 (10)	scaffold_12:9356152-9356614(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146077.1.S1_at	A	A1TS	POPTR_0005s23900	POPTR_0005s23900 (10)	scaffold_5:22610125-22611253(-) (10)	NA	Q99090	Light-inducible protein CPRF2	AT4G02640.2	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.146083.1.S1_s_at	A	A1TS	POPTR_0005s23610	POPTR_0005s23610 (11)	scaffold_5:22330882-22331182(+) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146084.1.S1_at	A	A1TS	POPTR_0005s25010	POPTR_0005s25010 (11)	scaffold_5:23377283-23377684(-) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT1G47270.2	tubby like protein 6 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146086.1.S1_s_at	A	A1TS	POPTR_0010s13240	POPTR_0010s13240 (11)	scaffold_10:13107836-13111941(-) (11)	NA	Q39ZL8	Cysteinyl-tRNA synthetase	AT5G38830.1	"Cysteinyl-tRNA synthetase, class Ia family protein "	LOC_Os09g38420.1	"cysteinyl-tRNA synthetase, putative, expressed"	Medtr1g140620.1	"Cysteinyl-tRNA synthetase, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006423|cysteinyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0004817|cysteine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.146088.1.S1_at	A	A2TS	POPTR_0008s03690	POPTR_0008s03690 (11)//POPTR_0010s23200 (11)	scaffold_10:19830318-19831268(+) (11)//scaffold_8:2004505-2005440(-) (11)	NA	O27555	Putative arsenical pump-driving ATPase	AT3G10350.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g51100.1	"arsenical pump-driving ATPase, putative, expressed"	Medtr1g120500.1	Anion-transporting ATPase 	GO:0006875|cellular metal ion homeostasis	GO:0005524|ATP binding	NA
PtpAffx.146099.1.S1_at	A	A1TS	POPTR_0003s07180	POPTR_0003s07180 (9)	scaffold_3:8779809-8781468(-) (9)	NA	O43670	Zinc finger protein 207	AT1G30970.1	zinc finger (C2H2 type) family protein 	LOC_Os09g38790.3	"ZOS9-19 - C2H2 zinc finger protein, expressed"	Medtr4g156140.1	"Zinc finger, BED-type predicted; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.146121.1.S1_s_at	A	A1TS	POPTR_0004s08050	POPTR_0004s08050 (11)	scaffold_4:6576782-6576948(+) (11)	NA	Q6INR1	Eukaryotic translation initiation factor 3 subunit J	AT1G66070.2	Translation initiation factor eIF3 subunit 	LOC_Os02g02990.1	"translation initiation factor eIF3 subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14614.1.S1_at	A	A1TS	POPTR_0018s06550	POPTR_0018s06550 (10)	scaffold_18:6493197-6493701(-) (10)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g29150.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.146146.1.S1_at	A	A2TS	POPTR_0002s14310	POPTR_0002s14310 (11)//POPTR_0002s14300 (9)	scaffold_2:10575627-10579659(+) (11)//scaffold_2:10579727-10581196(+) (9)	NA	NA	NA	AT3G15351.1	unknown protein; Has 50 Blast hits to 50 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g30220.1	expressed protein	Medtr4g121260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146151.1.S1_at	A	A1TS	POPTR_0006s23370	POPTR_0006s23370 (11)	scaffold_6:22119017-22119866(-) (11)	NA	P40343	Vacuolar protein sorting-associated protein 27	AT2G26210.3	Ankyrin repeat family protein 	LOC_Os07g42640.2	"FYVE zinc finger family protein, expressed"	Medtr8g133500.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146151.1.S1_s_at	A	A1TS	POPTR_0006s23370	POPTR_0006s23370 (11)	scaffold_6:22118784-22120077(-) (11)	NA	P40343	Vacuolar protein sorting-associated protein 27	AT2G26210.3	Ankyrin repeat family protein 	LOC_Os07g42640.2	"FYVE zinc finger family protein, expressed"	Medtr8g133500.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146152.1.S1_at	A	A1TS	POPTR_0005s27120	POPTR_0005s27120 (11)	scaffold_5:24916011-24916988(-) (11)	POPTR_0002s01250 (6)	Q6NPN9	WD repeat-containing protein DWA2	AT1G20540.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g44010.5	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146165.2.S1_at	A	A1MS	POPTR_0005s05900	POPTR_0005s05900 (11)	scaffold_5:3875304-3875759(+) (11)	NA	Q10Y48	Uridylate kinase	AT3G18680.1	Amino acid kinase family protein 	LOC_Os01g73450.1	"amino acid kinase, putative, expressed"	Medtr4g142340.1	Aspartate/glutamate/uridylate kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.146172.1.S1_at	A	A1TS	POPTR_0005s19200	POPTR_0005s19200 (11)	scaffold_5:17820884-17823276(+) (11)	NA	Q5RC80	RNA-binding protein 39	AT5G09880.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.146175.1.S1_s_at	A	A1TS	POPTR_0006s28990	POPTR_0006s28990 (11)	scaffold_6:26489774-26492288(-) (11)	NA	Q03194	Plasma membrane ATPase 4	AT2G24520.1	H(+)-ATPase 5 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.146199.1.A1_at	A	A1TS	POPTR_0004s18230	POPTR_0004s18230 (11)	scaffold_4:18203445-18203481(+) (11)	NA	Q28G05	Pre-mRNA-splicing factor syf2	AT2G16860.1	GCIP-interacting family protein 	LOC_Os06g49740.1	"pre-mRNA-splicing factor syf2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146199.1.A1_s_at	A	A1TS	POPTR_0004s18230	POPTR_0004s18230 (11)	scaffold_4:18203053-18203564(+) (11)	NA	Q28G05	Pre-mRNA-splicing factor syf2	AT2G16860.1	GCIP-interacting family protein 	LOC_Os06g49740.1	"pre-mRNA-splicing factor syf2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146199.2.S1_s_at	A	A1TS	POPTR_0004s18230	POPTR_0004s18230 (11)	scaffold_4:18201686-18202170(+) (11)	NA	Q28G05	Pre-mRNA-splicing factor syf2	AT2G16860.1	GCIP-interacting family protein 	LOC_Os06g49740.1	"pre-mRNA-splicing factor syf2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146199.3.A1_s_at	A	A1TS	POPTR_0004s18230	POPTR_0004s18230 (11)	scaffold_4:18202892-18203688(+) (11)	NA	Q28G05	Pre-mRNA-splicing factor syf2	AT2G16860.1	GCIP-interacting family protein 	LOC_Os06g49740.1	"pre-mRNA-splicing factor syf2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14620.1.S1_at	A	A1TS	POPTR_0014s02030	POPTR_0014s02030 (11)	scaffold_14:1785274-1785844(+) (11)	NA	Q948Z4	Snakin-1	AT5G59845.1	Gibberellin-regulated family protein 	LOC_Os03g55290.1	"GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr1g023670.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146202.1.A1_at	A	A1TS	POPTR_0005s26130	POPTR_0005s26130 (11)	scaffold_5:24221103-24221279(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g031210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146214.1.S1_at	A	A1TS	POPTR_0004s01660	POPTR_0004s01660 (11)	scaffold_4:1006252-1006747(-) (11)	NA	Q9ZS97	"UPF0051 protein ABCI8, chloroplastic"	AT4G04770.1	ATP binding cassette protein 1 	LOC_Os01g61400.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr7g029700.1	FeS assembly protein SufB 	GO:0016226|iron-sulfur cluster assembly	GO:0005515|protein binding	NA
PtpAffx.146219.1.S1_at	A	A1TS	POPTR_0014s09940	POPTR_0014s09940 (11)	scaffold_14:7456291-7457823(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT2G46710.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os04g48790.1	"rhoGAP domain containing protein, expressed"	Medtr8g029150.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.14623.1.A1_at	A	A1TS	POPTR_0007s00880	POPTR_0007s00880 (11)	scaffold_7:451718-452670(+) (11)	NA	Q6YXY2	Probable histone acetyltransferase HAC-like 1	AT1G05690.1	BTB and TAZ domain protein 3 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr5g015750.1	"Zinc finger, TAZ-type; BTB/POZ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.14623.2.A1_at	A	A1TS	POPTR_0017s04240	POPTR_0017s04240 (11)	scaffold_17:3275447-3276450(+) (11)	NA	Q6YXY2	Probable histone acetyltransferase HAC-like 1	AT1G05690.1	BTB and TAZ domain protein 3 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr5g015750.1	"Zinc finger, TAZ-type; BTB/POZ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.146247.1.S1_s_at	A	A1TS	POPTR_0001s19360	POPTR_0001s19360 (11)	scaffold_1:16999048-16999236(-) (11)	NA	Q41142	Phospholipase D alpha 1	AT1G52570.1	phospholipase D alpha 2 	LOC_Os01g07760.2	"phospholipase D, putative, expressed"	Medtr2g126370.1	"C2; Peptidase, cysteine peptidase active site "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.146249.1.S1_s_at	A	A1TS	POPTR_0013s00760	POPTR_0013s00760 (11)	scaffold_13:393416-394129(-) (11)	POPTR_0005s01370 (8)	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.146250.1.S1_at	A	A1TS	POPTR_0010s10050	POPTR_0010s10050 (11)	scaffold_10:10645018-10645441(-) (11)	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.146264.1.S1_at	A	A1TS	POPTR_0008s16490	POPTR_0008s16490 (11)	scaffold_8:11066507-11069234(-) (11)	NA	Q9LSW2	Actin-related protein 9	AT5G43500.2	actin-related protein 9 	LOC_Os04g09860.2	"actin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14629.1.S1_at	A	A1TS	POPTR_0019s05890	POPTR_0019s05890 (11)	scaffold_19:6311700-6312164(+) (11)	NA	Q9FKJ0	F-box/kelch-repeat protein At5g60570	AT5G60570.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g52830.2	"OsFBK15 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g110510.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1463.1.S1_at	A	A1TS	POPTR_0001s38900	POPTR_0001s38900 (11)	scaffold_1:38145756-38146215(-) (11)	NA	P22242	Desiccation-related protein PCC13-62	AT3G62730.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g22470.1	"desiccation-related protein PCC13-62 precursor, putative, expressed"	Medtr2g037730.1	"Desiccation-related protein PCC13-62 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14630.1.A1_at	A	A1TS	POPTR_0005s10960	POPTR_0005s10960 (11)	scaffold_5:7877886-7879378(+) (11)	NA	NA	NA	AT2G17710.1	unknown protein; Has 39 Blast hits to 39 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g47310.1	expressed protein	Medtr5g022960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146301.1.S1_s_at	A	A1TS	POPTR_0012s07060	POPTR_0012s07060 (11)	scaffold_12:7740083-7740561(+) (11)	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g51080.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146348.1.A1_at	A	A1TS	POPTR_0002s11010	POPTR_0002s11010 (11)	scaffold_2:8023139-8023236(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g127510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146348.1.A1_s_at	A	A1TS	POPTR_0002s11010	POPTR_0002s11010 (11)	scaffold_2:8023225-8023410(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g127510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146350.1.A1_s_at	A	A1TS	POPTR_0010s05860	POPTR_0010s05860 (9)	scaffold_10:7313880-7315472(+) (9)	NA	NA	NA	AT3G26360.1	Ribosomal protein S21 family protein 	LOC_Os03g48830.1	"ribosomal protein-related, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.146357.1.A1_at	A	A1TS	POPTR_0005s12380	POPTR_0005s12380 (11)	scaffold_5:9136581-9137130(-) (11)	NA	O23225	U-box domain-containing protein 5	AT4G36550.1	ARM repeat superfamily protein 	LOC_Os02g47670.2	"bg55, putative, expressed"	Medtr5g020450.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.146379.1.A1_at	A	A1TS	POPTR_0003s13400	POPTR_0003s13400 (11)	scaffold_3:13797309-13797585(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146387.1.A1_at	A	A1TS	POPTR_0014s10080	POPTR_0014s10080 (10)	scaffold_14:7562492-7562952(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146388.1.A1_at	A	A1TS	POPTR_0001s14920	POPTR_0001s14920 (11)	scaffold_1:11753329-11758543(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50160.1	Plant protein of unknown function (DUF247) 	LOC_Os01g21650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146429.1.A1_at	A	A1TS	POPTR_0011s10040	POPTR_0011s10040 (11)	scaffold_11:12499400-12499901(+) (11)	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.146445.1.A1_at	A	A1TS	POPTR_0007s12130	POPTR_0007s12130 (11)	scaffold_7:12453121-12454155(+) (11)	NA	O64827	Histone-lysine N-methyltransferase SUVR5	AT2G23740.2	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding 	LOC_Os02g47900.1	"SET domain protein SDG117, putative, expressed"	Medtr5g018800.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.14646.1.A1_a_at	A	A1MS	POPTR_0004s22120	POPTR_0004s22120 (11)	scaffold_4:21062753-21063174(+) (11)	NA	Q9FGZ9	Ubiquitin-like protein 5	AT3G45180.1	Ubiquitin-like superfamily protein 	LOC_Os11g04880.1	"ubiquitin-like protein 5, putative, expressed"	Medtr3g105020.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146463.2.A1_s_at	A	A1TS	POPTR_0018s06270	POPTR_0018s06270 (11)	scaffold_18:6004131-6004205(+) (11)	NA	NA	NA	AT4G13370.1	Plant protein of unknown function (DUF936) 	LOC_Os11g02740.1	expressed protein	Medtr4g092550.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146468.1.A1_at	A	A1TS	POPTR_0013s04140	POPTR_0013s04140 (11)	scaffold_13:2767074-2767497(+) (11)	NA	Q9ZTP3	Protein EIN4	AT3G04580.2	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os04g08740.2	"ethylene receptor, putative, expressed"	Medtr1g093360.1	"Tripartite hybrid signal transduction histidine kinase, BarA type; Bacteriophytochrome "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.146472.1.A1_at	A	A1TS	POPTR_0005s08000	POPTR_0005s08000 (11)	scaffold_5:5502479-5503138(-) (11)	NA	P33050	Pollen-specific protein C13	AT4G08685.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os04g32680.1	"POEI20 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr3g101320.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146473.1.A1_at	A	A1TS	POPTR_0010s14530	POPTR_0010s14530 (11)	scaffold_10:14102984-14103258(-) (11)	NA	P24068	Ocs element-binding factor 1	AT3G30530.1	basic leucine-zipper 42 	LOC_Os02g49560.1	"bZIP transcription factor domain containing protein, expressed"	AC146721_11.1	"bZIP transcription factor, bZIP_1 AC146721.7 56450-55611 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.146475.1.A1_a_at	A	A1TS	POPTR_0009s16410	POPTR_0009s16410 (11)	scaffold_9:12471466-12471584(-) (11)	NA	Q9H0G5	Coiled-coil domain-containing protein 55	AT2G27285.1	Coiled-coil domain-containing protein 55 (DUF2040) 	LOC_Os04g35910.1	"coiled-coil domain-containing protein 55, putative, expressed"	Medtr5g102580.1	"Coiled-coil domain-containing protein 55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146475.2.A1_at	A	A1TS	POPTR_0009s16410	POPTR_0009s16410 (9)	scaffold_9:12471434-12471479(-) (9)	NA	Q9H0G5	Coiled-coil domain-containing protein 55	AT2G27285.1	Coiled-coil domain-containing protein 55 (DUF2040) 	LOC_Os04g35910.1	"coiled-coil domain-containing protein 55, putative, expressed"	Medtr5g102580.1	"Coiled-coil domain-containing protein 55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14648.1.S1_s_at	A	A1TS	POPTR_0005s05870	POPTR_0005s05870 (11)	scaffold_5:3834521-3835018(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g143990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146481.1.A1_at	A	A1TS	POPTR_0006s24380	POPTR_0006s24380 (11)	scaffold_6:22998767-22999269(-) (11)	NA	P53259	"Rhomboid protein 1, mitochondrial"	AT1G18600.1	RHOMBOID-like protein 12 	LOC_Os01g55740.1	"OsRhmbd4 - Putative Rhomboid homologue, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.146483.1.A1_at	A	A1TS	POPTR_0004s03590	POPTR_0004s03590 (10)	scaffold_4:2490206-2491102(-) (10)	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.146495.1.A1_at	A	A1TS	POPTR_0018s09140	POPTR_0018s09140 (11)	scaffold_18:10037457-10037900(+) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G28880.1	casein kinase I-like 3 	LOC_Os02g17910.1	"CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr4g159400.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.146501.1.A1_at	A	A1TS	POPTR_0002s15430	POPTR_0002s15430 (11)	scaffold_2:11547858-11548568(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	LOC_Os01g67770.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.14653.2.S1_a_at	A	A1TS	POPTR_0004s08110	POPTR_0004s08110 (11)	scaffold_4:6629235-6629590(-) (11)	NA	Q43644	"NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial"	AT5G37510.1	"NADH-ubiquinone dehydrogenase, mitochondrial, putative "	LOC_Os03g50540.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr3g087270.1	Ferredoxin 	GO:0055114|oxidation reduction	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity"	NA
PtpAffx.146535.1.A1_at	A	A1TS	POPTR_0017s09670	POPTR_0017s09670 (11)	scaffold_17:8332453-8332748(+) (11)	NA	NA	NA	AT5G08391.1	Protein of unknown function (DUF 3339) 	LOC_Os11g30360.1	expressed protein	Medtr4g147160.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146546.1.A1_at	A	A1TS	POPTR_0017s07500	POPTR_0017s07500 (9)	scaffold_17:5834001-5834228(-) (9)	NA	NA	NA	AT1G58120.1	BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g42834.1	"retrotransposon protein, putative, unclassified"	Medtr4g120990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146555.1.A1_at	A	A1TS	POPTR_0014s02270	POPTR_0014s02270 (11)	scaffold_14:1932282-1933068(+) (11)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT3G53010.1	Domain of unknown function (DUF303)  	LOC_Os03g64030.1	"receptor protein kinase, putative, expressed"	Medtr4g032150.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146594.1.A1_at	A	A1TS	POPTR_0009s16190	POPTR_0009s16190 (11)	scaffold_9:12368228-12369918(+) (11)	NA	P49311	Glycine-rich RNA-binding protein GRP2A	AT2G27330.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g33810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g028670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.146606.1.A1_at	A	A1TS	POPTR_0008s15710	POPTR_0008s15710 (10)	scaffold_8:10473961-10474328(-) (10)	NA	Q9LUH9	EPIDERMAL PATTERNING FACTOR-like protein 5	AT3G22820.1	allergen-related 	LOC_Os03g06610.1	expressed protein	Medtr5g082990.1	"allergen-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146609.1.A1_at	A	A1TS	POPTR_0011s10390	POPTR_0011s10390 (11)	scaffold_11:12839368-12839825(+) (11)	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g47530.2	"CGMC_MAPKCMGC_2.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14663.2.S1_s_at	A	A1TS	POPTR_0014s16050	POPTR_0014s16050 (11)	scaffold_14:12124143-12124449(-) (11)	POPTR_0002s22060 (6)	NA	NA	AT5G35732.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g064950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14663.3.S1_at	A	A1MS	POPTR_0014s16050	POPTR_0014s16050 (11)	scaffold_14:12123904-12124084(-) (11)	NA	NA	NA	AT5G35732.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g064950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146630.1.A1_at	A	A1TS	POPTR_0001s35490	POPTR_0001s35490 (9)	scaffold_1:33830476-33830753(+) (9)	NA	Q6NQK2	NAC domain-containing protein 8	AT3G01600.1	NAC domain containing protein 44 	LOC_Os02g38130.1	"no apical meristem protein, putative, expressed"	Medtr5g069400.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.146636.1.A1_at	A	A1TS	POPTR_0007s09580	POPTR_0007s09580 (11)	scaffold_7:9077892-9078403(+) (11)	NA	Q9FKW4	Calcium-dependent protein kinase 28	AT5G66210.1	calcium-dependent protein kinase 28 	LOC_Os02g03410.2	"CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g021940.1	Protein kinase; EF-Hand type 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.146659.1.A1_at	A	A1TS	POPTR_0009s03430	POPTR_0009s03430 (11)	scaffold_9:4053769-4054503(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146671.1.A1_at	A	A1TS	POPTR_0017s11790	POPTR_0017s11790 (11)	scaffold_17:11636905-11637232(-) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G39865.1	Glutaredoxin family protein 	LOC_Os03g07470.1	"glutaredoxin, putative"	Medtr7g009510.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.146687.2.A1_at	A	A1TS	POPTR_0017s00560	POPTR_0017s00560 (11)	scaffold_17:252219-252643(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.14669.1.S1_at	A	A1TS	POPTR_0003s21490	POPTR_0003s21490 (9)	scaffold_3:19638154-19638689(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146695.1.A1_at	A	A1TS	POPTR_0006s05180	POPTR_0006s05180 (11)	scaffold_6:3624271-3624608(-) (11)	NA	P93788	Remorin	AT3G57540.1	Remorin family protein 	LOC_Os07g38170.1	"remorin, putative, expressed"	Medtr7g110620.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146710.1.A1_at	A	A1TS	POPTR_0002s11290	POPTR_0002s11290 (10)	scaffold_2:8346737-8347897(-) (10)	NA	P58223	KH domain-containing protein At4g18375	AT1G51580.1	RNA-binding KH domain-containing protein 	LOC_Os01g13470.1	"KH domain containing protein, putative, expressed"	Medtr3g127960.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.146713.1.A1_at	A	A1TS	POPTR_0002s06850	POPTR_0002s06850 (10)	scaffold_2:4601270-4601750(-) (10)	NA	NA	NA	NA	NA	LOC_Os01g64720.1	expressed protein	Medtr6g038720.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14672.1.A1_a_at	A	A1TS	POPTR_0006s02000	POPTR_0006s02000 (9)	scaffold_6:1227431-1230458(-) (11)//scaffold_6:1230277-1230364(-) (9)	POPTR_0006s02010 (8)	NA	NA	AT4G16380.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr8g148830.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.146729.1.A1_at	A	A1MS	POPTR_0004s04410	POPTR_0004s04410 (11)	scaffold_4:3171275-3171548(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT4G04960.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr2g017340.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.146737.1.A1_at	A	A1TS	POPTR_0014s16890	POPTR_0014s16890 (9)	scaffold_14:13020963-13021211(-) (9)	NA	Q8GUM4	Uncharacterized membrane protein At3g27390	AT4G12680.1	unknown protein; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g19630.2	"steroid nuclear receptor, ligand-binding, putative, expressed"	Medtr3g106920.1	"Steroid nuclear receptor, ligand-binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146738.1.A1_at	A	A1TA	POPTR_0004s12460	POPTR_0004s12460 (9)	scaffold_4:11557074-11557394(+) (9)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os06g18670.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr6g025520.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146767.1.A1_at	A	A1TS	POPTR_0012s12880	POPTR_0012s12880 (11)	scaffold_12:13257266-13257353(+) (11)	NA	NA	NA	AT5G23950.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os08g44850.1	"C2 domain containing protein, putative, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146769.1.A1_at	A	A1TS	POPTR_0002s07590	POPTR_0002s07590 (10)	scaffold_2:5187143-5187492(-) (10)	NA	Q9LRV2	Pentatricopeptide repeat-containing protein At3g26540	AT3G26540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g35650.1	"pentatricopeptide, putative, expressed"	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14677.1.A1_at	A	A1TS	POPTR_0001s17010	POPTR_0001s17010 (11)	scaffold_1:13835598-13835961(+) (11)	NA	NA	NA	AT1G17455.2	ELF4-like 4 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr8g024260.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14677.2.S1_at	A	A1TS	POPTR_0003s06270	POPTR_0003s06270 (11)	scaffold_3:7732940-7733079(-) (11)	NA	NA	NA	AT1G17455.2	ELF4-like 4 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr8g024260.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146774.1.A1_at	A	A1TS	POPTR_0001s09470	POPTR_0001s09470 (11)	scaffold_1:7223571-7224066(-) (11)	NA	NA	NA	AT4G00440.2	Protein of unknown function (DUF3741) 	LOC_Os03g01580.2	expressed protein	Medtr7g087380.1	"{, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146775.2.A1_at	A	A1TS	POPTR_0001s02860	POPTR_0001s02860 (11)	scaffold_1:2260967-2262118(+) (11)	NA	Q42581	"Ribose-phosphate pyrophosphokinase 1, chloroplastic"	AT2G35390.2	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.146786.1.A1_at	A	A1TS	POPTR_0001s05160	POPTR_0001s05160 (9)	scaffold_1:3959242-3960313(+) (11)	NA	Q5NYD9	UPF0061 protein AZOSEA38000	AT5G13030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0061 (InterPro:IPR003846); Has 5046 Blast hits to 4997 proteins in 1211 species: Archae - 8; Bacteria - 2327; Metazoa - 120; Fungi - 134; Plants - 48; Viruses - 0; Other Eukaryotes - 2409 (source: NCBI BLink). 	LOC_Os06g21600.1	"selenoprotein O, putative, expressed"	Medtr1g147230.1	Protein of unknown function UPF0061 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146787.1.A1_at	A	A1TS	POPTR_0006s22580	POPTR_0006s22580 (11)	scaffold_6:21554497-21554978(-) (11)	NA	Q9FMR3	NAC domain-containing protein 90	AT5G22380.1	NAC domain containing protein 90 	LOC_Os11g05614.1	"no apical meristem protein, putative, expressed"	Medtr2g107600.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.146792.1.A1_at	A	A1TS	POPTR_0009s15230	POPTR_0009s15230 (11)	scaffold_9:11816153-11816885(-) (11)	NA	P0CE10	"Putative uncharacterized protein At4g01020, chloroplastic"	AT5G60250.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os11g01240.1	IBR domain containing protein	Medtr4g080390.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.146810.1.A1_at	A	A1TS	POPTR_0004s23110	POPTR_0004s23110 (9)	scaffold_4:21894049-21895332(+) (9)	NA	P43853	ATP phosphoribosyltransferase	AT1G09795.1	ATP phosphoribosyl transferase 2 	LOC_Os03g04169.1	"ATP phosphoribosyltransferase, putative, expressed"	Medtr8g145150.1	ATP phosphoribosyltransferase; ; 	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0003879|ATP phosphoribosyltransferase activity	GO:0005737|cytoplasm
PtpAffx.146814.1.A1_at	A	A1TS	POPTR_0005s08300	POPTR_0005s08300 (11)	scaffold_5:5715349-5715812(+) (11)	NA	Q9ZT50	E3 ubiquitin-protein ligase RHA2A	AT1G15100.1	RING-H2 finger A2A 	LOC_Os02g45710.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g140560.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146828.1.A1_at	A	A1TS	POPTR_0001s08360	POPTR_0001s08360 (11)	scaffold_1:6370962-6371255(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146834.1.A1_at	A	A1TS	POPTR_0005s27660	POPTR_0005s27660 (11)	scaffold_5:25213485-25213783(+) (11)	NA	Q9LM69	RING-H2 finger protein ATL80	AT1G20823.1	RING/U-box superfamily protein 	LOC_Os02g46100.1	"RING-H2 finger protein, putative, expressed"	Medtr5g024680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146847.1.A1_s_at	A	A1MS	POPTR_0013s04760	POPTR_0013s04760 (11)	scaffold_13:3273244-3273489(+) (11)	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr7g139420.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146851.1.A1_at	A	A1MS	POPTR_0004s02010	POPTR_0004s02010 (9)	scaffold_4:1275739-1276103(-) (9)	NA	Q96576	Pectinesterase 3	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g046920.1	Pectinesterase; Pectinesterase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146878.2.A1_at	A	A1TS	POPTR_0002s12285	POPTR_0002s12285 (9)	scaffold_1233:6675-6707(-) (9)//scaffold_2:445580-445612(-) (9)//scaffold_2:9114941-9114973(+) (9)	NA	NA	NA	AT1G20760.1	Calcium-binding EF hand family protein 	NA	NA	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146878.2.A1_s_at	A	A3TS	POPTR_0002s00960	POPTR_0002s12285 (11)//POPTR_0002s00960 (11)//POPTR_0002s12245 (9)	scaffold_2:461772-461950(-) (11)//scaffold_2:9083143-9083239(+) (9)//scaffold_2:9114919-9115097(+) (11)	NA	Q9HGL2	Uncharacterized calcium-binding protein C800.10c	AT1G20760.1	Calcium-binding EF hand family protein 	LOC_Os03g03830.1	"EF hand family protein, putative, expressed"	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146892.1.A1_at	A	A1TS	POPTR_0017s04590	POPTR_0017s04590 (9)	scaffold_17:3527732-3528691(+) (9)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os11g35040.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.146895.1.A1_at	A	A1TS	POPTR_0001s13450	POPTR_0001s13450 (11)	scaffold_1:10533707-10534398(+) (11)	NA	NA	NA	AT5G13140.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os09g32988.1	"POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr7g148430.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146896.1.A1_at	A	A1TS	POPTR_0005s22290	POPTR_0005s22290 (10)	scaffold_5:21263522-21265524(-) (11)	NA	P38812	"Phosphatidylglycerophosphatase GEP4, mitochondrial"	AT3G58830.1	haloacid dehalogenase (HAD) superfamily protein 	LOC_Os01g58390.1	"haloacid dehalogenase, putative, expressed"	Medtr3g111100.1	HAD-superfamily phosphatase subfamily IIIA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146897.1.A1_at	A	A1TS	POPTR_0001s46910	POPTR_0001s46910 (11)	scaffold_1:47260593-47260874(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.146901.1.A1_at	A	A1TS	POPTR_0018s11040	POPTR_0018s11040 (10)	scaffold_18:11858435-11858717(+) (10)	NA	O24575	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os04g42090.5	"CPuORF7 - conserved peptide uORF-containing transcript, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.146904.1.A1_at	A	A1TA	POPTR_0003s21850	POPTR_0003s21850 (10)	scaffold_3:19848768-19849259(-) (11)	NA	NA	NA	AT3G57980.1	DNA-binding bromodomain-containing protein 	NA	NA	Medtr2g071430.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14691.2.A1_at	A	A1MS	POPTR_0009s06590	POPTR_0009s06590 (11)	scaffold_9:6342702-6342880(-) (11)	NA	P76352	Uncharacterized transporter yeeO	AT3G08040.2	MATE efflux family protein 	LOC_Os03g11734.2	"MATE efflux protein, putative, expressed"	Medtr3g028600.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.146912.1.A1_at	A	A1TS	POPTR_0011s02990	POPTR_0011s02990 (11)	scaffold_11:2952400-2952916(-) (11)	NA	Q8LG58	Probable xyloglucan endotransglucosylase/hydrolase protein 16	AT3G23730.1	xyloglucan endotransglucosylase/hydrolase 16 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.146922.1.A1_at	A	A1TS	POPTR_0009s10190	POPTR_0009s10190 (11)	scaffold_9:8815955-8816439(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146922.2.A1_at	A	A1TS	POPTR_0009s10180	POPTR_0009s10180 (11)	scaffold_9:8812183-8812657(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT4G34131.1	UDP-glucosyl transferase 73B3 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146927.1.A1_at	A	A1TS	POPTR_0006s22350	POPTR_0006s22350 (11)	scaffold_6:21385117-21385614(-) (11)	NA	Q7FAE1	Momilactone A synthase	AT4G03140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g33240.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.146934.1.A1_at	A	A1TS	POPTR_0011s04450	POPTR_0011s04450 (11)	scaffold_11:4431650-4431969(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146948.1.A1_at	A	A1TS	POPTR_0005s21370	POPTR_0005s21370 (11)	scaffold_5:20478107-20478949(+) (11)	NA	Q8S3U9	Exocyst complex component 2	AT1G76850.1	exocyst complex component sec5 	LOC_Os04g34450.1	expressed protein	Medtr3g009450.1	"Exocyst complex component 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146961.1.A1_at	A	A1TS	POPTR_0007s01490	POPTR_0007s01490 (11)	scaffold_7:830838-831100(-) (11)	NA	NA	NA	AT5G62270.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1). 	LOC_Os01g58750.1	expressed protein	Medtr4g089720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146961.2.A1_a_at	A	A1TS	POPTR_0007s01490	POPTR_0007s01490 (11)	scaffold_7:831170-833305(-) (11)	NA	NA	NA	AT5G62270.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1). 	LOC_Os01g58750.1	expressed protein	Medtr4g089720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146962.1.A1_at	A	A1TS	POPTR_0008s18330	POPTR_0008s18330 (11)	scaffold_8:12270724-12270842(-) (11)	NA	Q9NVU7	Protein SDA1 homolog	AT1G13160.1	ARM repeat superfamily protein 	LOC_Os04g53770.1	"SDA1, putative, expressed"	Medtr3g102700.1	"SDA1; Protein of unknown function, nucleolar NUC1303, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146963.1.A1_s_at	A	A1TS	POPTR_0007s12540	POPTR_0007s12540 (11)	scaffold_7:12832317-12832591(+) (11)	NA	Q9NVU0	DNA-directed RNA polymerase III subunit RPC5	AT5G49530.1	SIN-like family protein 	LOC_Os08g16780.1	"sin-like protein conserved region containing protein, expressed"	Medtr5g026170.1	Sin-like protein conserved region 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.146965.1.A1_s_at	A	A1TS	POPTR_0018s02740	POPTR_0018s02740 (11)	scaffold_18:2438891-2440550(+) (11)	NA	Q5R7X2	U2-associated protein SR140	AT5G25060.1	RNA recognition motif (RRM)-containing protein 	LOC_Os02g08360.1	"RNA recognition motif, putative, expressed"	Medtr8g083970.1	"SWAP/Surp; DNA-binding SAP; Regulation of nuclear pre-mRNA protein; ENTH/VHS; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.146978.1.A1_at	A	A1MS	POPTR_0010s10430	POPTR_0010s10430 (11)	scaffold_10:10943846-10944241(+) (11)	NA	NA	NA	AT1G70280.2	NHL domain-containing protein 	LOC_Os02g49770.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146981.1.A1_at	A	A1MA	POPTR_0006s27850	POPTR_0006s27850 (11)	scaffold_6:25703202-25703463(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146984.1.A1_at	A	A1TS	POPTR_0002s22840	POPTR_0002s22840 (9)	scaffold_2:19846095-19846545(+) (9)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT3G63010.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g111060.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.146990.1.A1_at	A	A1TS	POPTR_0008s14160	POPTR_0008s14160 (10)	scaffold_8:9350215-9350765(+) (11)	NA	P0C042	Uncharacterized protein At4g15970	AT1G14590.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os04g49590.1	"regulatory protein, putative, expressed"	Medtr1g039640.1	"Uncharacterized protein At4g15970, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146996.1.A1_at	A	A1TS	POPTR_0010s24220	POPTR_0010s24220 (11)	scaffold_10:20528261-20528824(+) (11)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os11g37070.1	expressed protein	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146998.1.A1_at	A	A2TS	POPTR_0019s14960	POPTR_0019s14960 (11)//POPTR_0019s15000 (9)	scaffold_19:15589666-15590057(-) (11)//scaffold_19:15627657-15628048(-) (9)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.146999.1.A1_at	A	A1MA	POPTR_0019s01350	POPTR_0019s01350 (10)	scaffold_19:1191693-1191855(-) (10)	POPTR_0019s01470 (8)//POPTR_0019s01410 (8)	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.147.1.S1_at	A	A1TS	POPTR_0019s10190	POPTR_0019s10190 (9)	scaffold_19:11765184-11765704(+) (9)	NA	Q3AQ69	UPF0301 protein Cag_1601	AT1G33780.1	Protein of unknown function (DUF179) 	LOC_Os05g34720.1	"transcriptional regulator, putative, expressed"	Medtr3g012670.1	Protein of unknown function DUF179 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14700.1.S1_a_at	A	A1TS	POPTR_0007s06950	POPTR_0007s06950 (11)	scaffold_7:5317581-5317840(-) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G39390.2	nucleotide sugar transporter-KT 1 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr3g144540.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14700.2.S1_at	A	A1TS	POPTR_0007s06950	POPTR_0007s06950 (9)	scaffold_7:5317347-5317914(-) (10)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G39390.2	nucleotide sugar transporter-KT 1 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr3g144540.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147001.1.A1_at	A	A2TS	POPTR_0004s02560	POPTR_0499s00200 (11)//POPTR_0004s02560 (11)	scaffold_4:1695312-1695722(+) (11)//scaffold_499:9072-9482(-) (11)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os07g43560.1	"TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147014.1.A1_at	A	A1TA	POPTR_0006s09340	POPTR_0006s09340 (10)	scaffold_6:6866901-6867270(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147015.1.A1_at	A	A1MS	POPTR_0003s10850	POPTR_0003s10850 (10)	scaffold_3:11706739-11707063(-) (10)	NA	P83436	Conserved oligomeric Golgi complex subunit 7	AT5G51430.1	conserved oligomeric Golgi complex component-related / COG complex component-related 	LOC_Os06g45830.1	expressed protein	Medtr6g005500.1	"conserved oligomeric Golgi complex component 7-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147021.1.A1_at	A	A2TS	POPTR_0012s09150	POPTR_0357s00210 (11)//POPTR_0012s09150 (11)	scaffold_12:10211851-10212231(-) (11)//scaffold_357:5679-6059(-) (11)	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os12g27520.1	"serine/threonine-protein kinase AFC2, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147022.1.A1_at	A	A1TS	POPTR_0005s06700	POPTR_0005s06700 (11)	scaffold_5:4505989-4506337(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147023.1.A1_at	A	A1TS	POPTR_0018s02850	POPTR_0018s02850 (10)	scaffold_18:2508508-2509446(+) (10)	NA	Q9ZVR5	Putative F-box protein PP2-B2	AT2G02250.1	phloem protein 2-B2 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr1g092880.1	"Cyclin-like F-box; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147029.1.A1_at	A	A1TS	POPTR_0014s09500	POPTR_0014s09500 (11)	scaffold_14:7054124-7054523(-) (11)	NA	Q39056	Molybdopterin biosynthesis protein CNX3	AT1G01290.2	cofactor of nitrate reductase and xanthine dehydrogenase 3 	LOC_Os04g38700.2	"molybdopterin biosynthesis protein CNX3, putative, expressed"	Medtr5g015830.1	Molybdopterin cofactor biosynthesis MoaC region 	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.147034.1.A1_at	A	A1TS	POPTR_0009s17040	POPTR_0009s17040 (10)	scaffold_9:12839606-12840858(+) (10)	NA	NA	NA	NA	NA	LOC_Os08g40120.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147036.1.A1_at	A	A1TS	POPTR_0001s39970	POPTR_0001s39970 (11)	scaffold_1:39299461-39299932(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os04g40440.1	expressed protein	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.147044.1.A1_at	A	A1TS	POPTR_0012s02410	POPTR_0012s02410 (11)	scaffold_12:1985402-1986598(-) (11)	NA	NA	NA	AT5G53045.1	unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os02g20280.1	conserved hypothetical protein	Medtr3g123560.1	Transcription factor Pcc1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147049.1.A1_at	A	A1TS	POPTR_0003s15220	POPTR_0003s15220 (11)	scaffold_3:15071678-15071955(-) (11)	NA	Q9Y253	DNA polymerase eta	AT5G44740.2	Y-family DNA polymerase H 	LOC_Os01g55300.1	"DNA-directed polymerase, putative, expressed"	AC235671_13.1	UMUC-like DNA-repair protein AC235671.2 55734-58183 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
PtpAffx.147052.1.A1_at	A	A1TS	POPTR_0008s10390	POPTR_0008s10390 (11)	scaffold_8:6501208-6501255(-) (11)	NA	Q0V7V2	Probable protein phosphatase 2C 42	AT3G17090.1	Protein phosphatase 2C family protein 	LOC_Os03g61690.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037990.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147068.1.A1_at	A	A1TS	POPTR_0006s15920	POPTR_0006s15920 (11)	scaffold_6:13600661-13601294(+) (11)	NA	NA	NA	AT3G25910.1	Protein of unknown function (DUF1644) 	LOC_Os01g42700.5	expressed protein	Medtr8g119520.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147068.2.A1_at	A	A1TS	POPTR_0018s06600	POPTR_0018s06600 (11)	scaffold_18:6630161-6630734(-) (11)	NA	NA	NA	AT3G25910.1	Protein of unknown function (DUF1644) 	LOC_Os01g42700.5	expressed protein	Medtr8g119520.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147079.1.A1_at	A	A1TS	POPTR_0015s03550	POPTR_0015s03550 (11)	scaffold_15:3245770-3246948(-) (11)	NA	Q9LEZ3	Transcription factor BIM1	AT5G08130.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.147099.1.A1_at	A	A1TS	POPTR_0014s01720	POPTR_0014s01720 (11)	scaffold_14:1618859-1619066(-) (11)	NA	Q9H1I8	Activating signal cointegrator 1 complex subunit 2	AT1G27752.1	Ubiquitin system component Cue protein 	LOC_Os03g10750.1	"CUE domain containing protein, expressed"	Medtr1g023480.1	"T22C5.20, related "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.14710.1.A1_a_at	A	A1TS	POPTR_0001s17190	POPTR_0001s17190 (11)	scaffold_1:14042451-14042798(-) (11)	NA	Q9XI29	Uncharacterized protein At1g15400	AT1G15400.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g46500.1	expressed protein	Medtr2g126000.1	"Uncharacterized protein At1g15400, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14710.2.S1_s_at	A	A1TS	POPTR_0003s06070	POPTR_0003s06070 (11)	scaffold_3:7474078-7474360(+) (11)	NA	Q9XI29	Uncharacterized protein At1g15400	AT1G15400.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g46500.1	expressed protein	Medtr2g126000.1	"Uncharacterized protein At1g15400, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14710.3.A1_at	A	A1TS	POPTR_0001s17190	POPTR_0001s17190 (11)	scaffold_1:14041909-14042747(-) (11)	NA	Q9XI29	Uncharacterized protein At1g15400	AT1G15400.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g46500.1	expressed protein	Medtr2g126000.1	"Uncharacterized protein At1g15400, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147145.1.A1_at	A	A1TS	POPTR_0003s03010	POPTR_0003s03010 (11)	scaffold_3:3264837-3264964(-) (11)	NA	NA	NA	AT1G55170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). 	LOC_Os12g09089.2	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g121450.1	"Protein kinase PKN/PRK1, effector, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147145.1.A1_s_at	A	A1TS	POPTR_0003s03010	POPTR_0003s03010 (11)	scaffold_3:3265014-3265266(-) (11)	NA	NA	NA	AT1G55170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). 	LOC_Os12g09089.2	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g121450.1	"Protein kinase PKN/PRK1, effector, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147155.1.A1_s_at	A	A1TS	POPTR_0002s08690	POPTR_0002s08690 (11)	scaffold_2:6090075-6090248(-) (11)	NA	Q8IYB7	DIS3-like exonuclease 2	AT1G77680.1	Ribonuclease II/R family protein 	LOC_Os02g51780.1	"ribonuclease protein, putative, expressed"	Medtr5g065170.1	Ribonuclease II 	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.147163.1.A1_at	A	A1TS	POPTR_0044s00270	POPTR_0044s00270 (11)	scaffold_10:2141561-2141912(-) (11)//scaffold_10:2223265-2231830(-) (10)//scaffold_44:3805-4323(-) (11)//scaffold_44:129715-130057(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os04g54070.1	"receptor-like kinase, putative"	Medtr2g011200.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.147176.1.A1_at	A	A1TS	POPTR_0018s09000	POPTR_0018s09000 (11)	scaffold_18:9889650-9889747(-) (11)	NA	O80345	Cyclin-dependent kinase F-1	AT4G28980.1	CDK-activating kinase 1AT 	LOC_Os06g22820.1	"cyclin-dependent kinase F-1, putative, expressed"	Medtr6g099270.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147176.1.A1_s_at	A	A1TS	POPTR_0018s09000	POPTR_0018s09000 (11)	scaffold_18:9889810-9890142(-) (11)	NA	O80345	Cyclin-dependent kinase F-1	AT4G28980.1	CDK-activating kinase 1AT 	LOC_Os06g22820.1	"cyclin-dependent kinase F-1, putative, expressed"	Medtr6g099270.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147178.1.A1_s_at	A	A1TS	POPTR_0008s18990	POPTR_0008s18990 (11)	scaffold_8:12956388-12956804(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147190.1.A1_at	A	A1TS	POPTR_0003s09190	POPTR_0003s09190 (11)	scaffold_3:10524801-10524916(+) (11)	NA	Q7XLY8	E3 ubiquitin-protein ligase Os04g0590900	AT3G03550.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g029880.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147190.1.A1_s_at	A	A1TS	POPTR_0003s09190	POPTR_0003s09190 (11)	scaffold_3:10524638-10524780(+) (11)	NA	Q7XLY8	E3 ubiquitin-protein ligase Os04g0590900	AT3G03550.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g029880.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147191.1.A1_at	A	A1TS	POPTR_0009s10650	POPTR_0009s10650 (10)	scaffold_9:9113247-9113317(-) (10)	NA	Q9LJL3	"Presequence protease 1, chloroplastic/mitochondrial"	AT3G19170.1	presequence protease 1 	LOC_Os02g52390.1	"M16 domain containing zinc peptidase, putative, expressed"	AC151525_23.1	"Small acid-soluble spore protein, alpha/beta type; ; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF AC151525.18 114168-104858 E EGN_Mt090430 200"	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.147194.1.A1_at	A	A1TS	POPTR_0007s02180	POPTR_0007s02180 (9)	scaffold_7:1309573-1309698(-) (9)	NA	P54967	Biotin synthase	AT2G43360.1	Radical SAM superfamily protein 	LOC_Os08g42730.1	"radical SAM enzyme, putative, expressed"	Medtr4g104400.1	Biotin and thiamin synthesis associated 	GO:0044283|small molecule biosynthetic process||GO:0009102|biotin biosynthetic process||GO:0044281|small molecule metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0004076|biotin synthase activity	NA
PtpAffx.1472.2.A1_a_at	A	A1TS	POPTR_0013s04340	POPTR_0013s04340 (11)	scaffold_13:2955000-2955474(+) (11)	NA	P92948	Cell division cycle 5-like protein	AT1G09770.1	cell division cycle 5 	LOC_Os04g28090.1	"MYB family transcription factor, putative, expressed"	Medtr5g010630.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147200.1.A1_s_at	A	A1MS	POPTR_0002s11960	POPTR_0002s11960 (11)	scaffold_2:8861284-8861772(+) (11)	NA	O22193	U-box domain-containing protein 4	AT3G01400.1	ARM repeat superfamily protein 	LOC_Os03g32100.1	"spotted leaf 11, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147204.1.A1_at	A	A1TS	POPTR_0002s22440	POPTR_0002s22440 (10)	scaffold_2:19168784-19169273(-) (11)	NA	Q8CFY5	"Protoheme IX farnesyltransferase, mitochondrial"	AT2G44520.1	cytochrome c oxidase 10 	LOC_Os01g34390.1	"prenyltransferase, putative, expressed"	Medtr1g146440.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.147208.1.A1_at	A	A1TS	POPTR_0001s18800	POPTR_0001s18800 (11)	scaffold_1:15961072-15961565(+) (11)	NA	Q9LYD3	Dehydration-responsive element-binding protein 3	AT5G11590.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43940.1	"AP2 domain containing protein, expressed"	Medtr2g122400.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.14721.1.S1_at	A	A1TS	POPTR_0006s27540	POPTR_0006s27540 (11)	scaffold_6:25400668-25401157(+) (11)	NA	NA	NA	AT5G11070.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147219.1.A1_a_at	A	A1TS	POPTR_0010s10240	POPTR_0010s10240 (11)	scaffold_10:10803155-10803497(+) (11)	NA	Q4TU14	E3 ubiquitin-protein ligase RHF1A	AT4G14220.1	RING-H2 group F1A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147220.1.A1_at	A	A1MS	POPTR_0005s06030	POPTR_0005s06030 (11)	scaffold_5:3967697-3968243(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g08700.1	expressed protein	Medtr4g142680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147222.1.A1_at	A	A1TS	POPTR_0005s00600	POPTR_0005s00600 (11)	scaffold_5:250868-251230(+) (11)	NA	Q40392	TMV resistance protein N	AT1G72860.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.147234.1.A1_at	A	A1TS	POPTR_0006s19740	POPTR_0006s19740 (11)	scaffold_6:18769505-18769831(-) (11)	NA	NA	NA	AT4G31830.1	unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g145280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147237.1.A1_at	A	A1TS	POPTR_0009s09020	POPTR_0009s09020 (11)	scaffold_9:8112578-8113480(+) (11)	NA	NA	NA	AT1G49950.1	telomere repeat binding factor 1 	LOC_Os12g41920.3	"single myb histone, putative, expressed"	Medtr8g101640.1	"Linker histone, N-terminal; Homeodomain-like "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.147241.1.A1_s_at	A	A1TS	POPTR_0016s08040	POPTR_0016s08040 (11)	scaffold_16:5856713-5857130(+) (11)	NA	NA	NA	AT3G52710.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g127500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147253.1.A1_at	A	A1TS	POPTR_0004s17670	POPTR_0004s17670 (11)	scaffold_4:17776183-17777660(+) (11)	NA	Q9LT81	Zinc finger CCCH domain-containing protein 39	AT3G19360.1	Zinc finger (CCCH-type) family protein 	LOC_Os08g06330.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119730.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.147255.1.A1_at	A	A1TS	POPTR_0019s12030	POPTR_0019s12030 (11)	scaffold_19:13189992-13190412(-) (11)	NA	P43935	Uncharacterized protein HI_0077	AT1G06240.1	Protein of unknown function DUF455 	LOC_Os01g11590.2	"uncharacterized protein HI0077, putative, expressed"	Medtr3g124330.1	Protein of unknown function DUF455 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147259.1.A1_at	A	A1TS	POPTR_0001s17180	POPTR_0001s17180 (11)	scaffold_1:14029672-14030192(-) (11)	NA	Q94AJ5	Probable polygalacturonase At1g80170	AT1G80170.1	Pectin lyase-like superfamily protein 	LOC_Os05g46510.1	"polygalacturonase, putative, expressed"	Medtr2g126040.1	"Pectolytic enzyme, Pectin lyase fold "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.147262.1.A1_at	A	A1TS	POPTR_0013s06230	POPTR_0013s06230 (11)	scaffold_13:4611676-4611910(-) (11)	NA	Q4WYG7	Protein pns1	AT3G04440.1	Plasma-membrane choline transporter family protein 	LOC_Os07g46240.1	"choline transporter-related, putative, expressed"	Medtr7g103510.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147308.1.A1_at	A	A1TS	POPTR_0004s21340	POPTR_0004s21340 (11)	scaffold_4:20502197-20502740(-) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT1G08350.2	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr4g070020.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.147311.1.A1_at	A	A1TA	POPTR_0009s16960	POPTR_0009s16960 (11)	scaffold_9:12792411-12792837(+) (11)	NA	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os02g13560.4	"transporter family protein, putative, expressed"	Medtr3g164110.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.147317.1.A1_at	A	A1TS	POPTR_0001s15040	POPTR_0001s15040 (11)	scaffold_1:11886924-11887141(+) (11)	NA	Q9LKI5	DNA repair endonuclease UVH1	AT5G41150.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os03g01100.1	"endonuclease, putative, expressed"	Medtr5g013620.1	ERCC4 	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0005515|protein binding||GO:0004518|nuclease activity||GO:0003677|DNA binding	NA
PtpAffx.147317.1.A1_s_at	A	A2TS	POPTR_0001s15040	POPTR_0003s03170 (11)//POPTR_0001s15040 (11)	scaffold_1:11886539-11886768(+) (11)//scaffold_3:3591861-3592090(-) (11)	NA	Q9LKI5	DNA repair endonuclease UVH1	AT5G41150.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os03g01100.1	"endonuclease, putative, expressed"	Medtr5g013620.1	ERCC4 	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0005515|protein binding||GO:0004518|nuclease activity||GO:0003677|DNA binding	NA
PtpAffx.147323.1.A1_at	A	A1TS	POPTR_0008s15390	POPTR_0008s15390 (11)	scaffold_8:10249812-10250206(-) (11)	NA	NA	NA	AT3G22530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g07670.1	expressed protein	Medtr5g006510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147326.1.A1_at	A	A1TS	POPTR_0014s06230	POPTR_0014s06230 (11)	scaffold_14:4740799-4743343(-) (11)	NA	O22151	Golgi SNARE 12 protein	AT2G45200.1	golgi snare 12 	LOC_Os02g03450.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr4g022490.1	Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147327.1.A1_at	A	A1TS	POPTR_0017s08370	POPTR_0017s08370 (11)	scaffold_17:6884537-6886066(-) (11)	NA	NA	NA	AT2G32760.1	unknown protein; Has 229 Blast hits to 229 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os06g50110.1	expressed protein	Medtr4g133650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147335.1.A1_at	A	A1TS	POPTR_0011s00960	POPTR_0011s00960 (10)	scaffold_11:497213-497708(+) (10)	NA	Q91Z38	Tetratricopeptide repeat protein 1	AT1G62390.1	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein 	LOC_Os09g04990.1	"cytoskeletal protein, putative, expressed"	Medtr8g147450.1	Octicosapeptide/Phox/Bem1p; Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147337.1.A1_at	A	A1MS	POPTR_0002s01110	POPTR_0002s01110 (11)	scaffold_2:597056-597410(+) (11)	NA	Q5R7B8	Kelch-like protein 20	AT2G30600.4	BTB/POZ domain-containing protein 	LOC_Os05g27880.2	"BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed"	Medtr5g075660.1	BTB/POZ; Galactose-binding like; ; 	GO:0007155|cell adhesion	GO:0005515|protein binding	NA
PtpAffx.147338.1.A1_a_at	A	A1TS	POPTR_0019s15270	POPTR_0019s15270 (11)	scaffold_19:15812823-15813239(-) (11)	NA	Q9ZVI3	KH domain-containing protein At2g38610	AT2G38610.2	RNA-binding KH domain-containing protein 	LOC_Os03g60110.1	"KH domain containing protein, putative, expressed"	Medtr7g080640.1	"KH, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147340.1.A1_at	A	A1TS	POPTR_0001s41280	POPTR_0001s41280 (11)	scaffold_1:40887987-40888401(-) (11)	NA	Q9FI00	MLO-like protein 11	AT5G53760.2	Seven transmembrane MLO family protein 	LOC_Os11g07912.1	"MLO domain containing protein, putative, expressed"	AC225519_22.1	Mlo-related protein AC225519.5 96204-99734 H EGN_Mt090430 200	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.147346.1.A1_at	A	A1TS	POPTR_0019s08660	POPTR_0019s08660 (11)	scaffold_19:10189717-10189856(+) (11)	NA	NA	NA	AT3G51580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). 	NA	NA	Medtr7g080400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14737.1.A1_s_at	A	A1TS	POPTR_0014s12480	POPTR_0014s12480 (11)	scaffold_14:9192022-9193272(+) (11)	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147378.2.A1_a_at	A	A1TS	POPTR_0014s05630	POPTR_0014s05630 (11)	scaffold_14:4194753-4195883(-) (11)	NA	NA	NA	AT4G25170.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os04g46480.1	expressed protein	Medtr7g040860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147379.1.A1_at	A	A1MS	POPTR_0018s06400	POPTR_0018s06400 (11)	scaffold_18:6251897-6252441(+) (11)	NA	O48788	Probable inactive receptor kinase At2g26730	AT2G26730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g42294.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g118800.1	Formate C-acetyltransferase glycine radical; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.147382.1.S1_at	A	A1TS	POPTR_0002s02540	POPTR_0002s02540 (11)	scaffold_2:1439416-1439927(-) (11)	NA	NA	NA	AT3G11290.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os07g02500.1	conserved hypothetical protein	Medtr1g031000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147382.2.A1_at	A	A1TA	POPTR_0002s02540	POPTR_0002s02540 (11)	scaffold_2:1439805-1440300(+) (11)	NA	NA	NA	AT3G11290.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os07g02500.1	conserved hypothetical protein	Medtr1g031000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147399.1.A1_at	A	A1TS	POPTR_0006s07010	POPTR_0006s07010 (11)	scaffold_6:5062412-5062918(+) (11)	NA	O04196	"Isoamylase 1, chloroplastic"	AT2G39930.1	isoamylase 1 	LOC_Os08g40930.1	"Alpha amylase, catalytic domain containing protein, expressed"	Medtr4g160980.1	"Alpha amylase, catalytic region; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.147404.1.A1_at	A	A1TS	POPTR_0004s06240	POPTR_0004s06240 (11)	scaffold_4:4945778-4946272(+) (11)	POPTR_0004s06270 (8)	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147418.1.A1_at	A	A1TS	POPTR_0015s10180	POPTR_0015s10180 (11)	scaffold_15:11183436-11183494(-) (11)	NA	Q921I2	Kelch domain-containing protein 4	AT5G50310.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g40740.1	"kelch repeat protein, putative, expressed"	Medtr2g025020.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147418.1.A1_s_at	A	A1TS	POPTR_0015s10180	POPTR_0015s10180 (11)	scaffold_15:11183657-11184799(-) (11)	NA	Q921I2	Kelch domain-containing protein 4	AT5G50310.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g40740.1	"kelch repeat protein, putative, expressed"	Medtr2g025020.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147427.1.A1_at	A	A1TS	POPTR_0010s10900	POPTR_0010s10900 (11)	scaffold_10:11284132-11284394(+) (11)	NA	Q66GP4	"Pentatricopeptide repeat-containing protein At5g13770, chloroplastic"	AT5G13770.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os04g49350.1	"PPR repeat domain containing protein, putative, expressed"	AC233662_58.1	Pentatricopeptide repeat AC233662.1 266570-264088 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147430.1.A1_at	A	A1TS	POPTR_0012s13870	POPTR_0012s13870 (11)	scaffold_12:13825428-13825820(-) (11)	NA	Q9FJ93	Dehydration-responsive element-binding protein 1D	AT5G51990.1	C-repeat-binding factor 4 	LOC_Os04g48350.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr1g129500.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.147443.1.A1_at	A	A1MS	POPTR_0006s15460	POPTR_0006s15460 (10)	scaffold_6:12851950-12852373(+) (10)	NA	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT3G13690.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	Medtr4g160790.1	"protein kinase family protein, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147445.1.A1_at	A	A1TS	POPTR_0019s11460	POPTR_0019s11460 (11)	scaffold_19:12729027-12729739(+) (11)	NA	C0LGV1	LRR receptor-like serine/threonine-protein kinase RCH1	AT1G34420.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os12g08180.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g094070.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.147452.1.A1_at	A	A1TS	POPTR_0010s23050	POPTR_0010s23050 (11)	scaffold_10:19740914-19742823(+) (11)	NA	NA	NA	AT4G14145.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g17910.1	"kinesin like protein, putative, expressed"	Medtr1g120690.1	"kinesin like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147467.1.A1_at	A	A1TS	POPTR_0003s19400	POPTR_0003s19400 (10)	scaffold_3:18133973-18135123(+) (10)	NA	O43447	Peptidyl-prolyl cis-trans isomerase H	AT2G38730.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os03g59700.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g043670.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.14747.1.A1_at	A	A1TS	POPTR_0018s08840	POPTR_0018s08840 (11)	scaffold_18:9766814-9767235(+) (11)	NA	Q8S9D1	Pentatricopeptide repeat-containing protein At5g21222	AT5G21222.1	protein kinase family protein 	LOC_Os01g12810.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g009410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147493.1.A1_a_at	A	A2TS	POPTR_0002s14350	POPTR_0002s14350 (11)//POPTR_0014s05730 (11)	scaffold_14:4277218-4277992(-) (11)//scaffold_2:10621604-10622389(-) (11)	NA	NA	NA	AT3G60520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g46600.1	"zinc finger protein, putative, expressed"	Medtr8g005660.1	zinc ion binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147493.1.A1_at	A	A1TS	POPTR_0014s05730	POPTR_0014s05730 (11)	scaffold_14:4277049-4277968(-) (11)	NA	NA	NA	AT3G60520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g46600.1	"zinc finger protein, putative, expressed"	Medtr8g005660.1	zinc ion binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147493.2.A1_at	A	A1TS	POPTR_0002s14350	POPTR_0002s14350 (11)	scaffold_2:10621288-10621785(-) (11)	NA	NA	NA	AT3G60520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g46600.1	"zinc finger protein, putative, expressed"	Medtr8g005660.1	zinc ion binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147506.1.S1_at	A	A1TS	POPTR_0010s19490	POPTR_0010s19490 (10)	scaffold_10:17373300-17373541(-) (10)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147509.1.A1_at	A	A1TS	POPTR_0012s06710	POPTR_0012s06710 (11)	scaffold_12:7150051-7150233(-) (11)	NA	Q6NYV9	RNA polymerase-associated protein LEO1	AT5G61150.2	leo1-like family protein 	LOC_Os12g38970.1	"VIP4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147509.1.A1_s_at	A	A1TS	POPTR_0012s06710	POPTR_0012s06710 (11)	scaffold_12:7150227-7151444(-) (11)	NA	Q6NYV9	RNA polymerase-associated protein LEO1	AT5G61150.2	leo1-like family protein 	LOC_Os12g38970.1	"VIP4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147516.1.A1_at	A	A1MS	POPTR_0013s15640	POPTR_0013s15640 (11)	scaffold_13:15571405-15572343(-) (11)	NA	Q9LVM1	"ABC transporter B family member 25, mitochondrial"	AT5G58270.1	ABC transporter of the mitochondrion 3 	LOC_Os06g03770.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g083810.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.14753.1.A1_at	A	A1TS	POPTR_0018s10430	POPTR_0018s10430 (9)	scaffold_18:11354041-11354448(-) (11)	NA	Q40374	Pathogenesis-related protein PR-1	AT4G25780.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os02g54560.1	"SCP-like extracellular protein, expressed"	Medtr8g128350.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147539.1.A1_at	A	A1TS	POPTR_0002s01100	POPTR_0002s01100 (11)	scaffold_2:586797-587462(+) (11)	NA	Q9SFW6	Cyclin-B2-4	AT1G76310.1	CYCLIN B2;4 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.147546.1.A1_at	A	A1TS	POPTR_0001s45930	POPTR_0001s45930 (10)	scaffold_1:46436469-46436712(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147547.1.A1_at	A	A1TS	POPTR_0015s05310	POPTR_0015s05310 (10)	scaffold_15:5669313-5669400(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147552.1.A1_s_at	A	A1TS	POPTR_0008s19710	POPTR_0008s19710 (11)	scaffold_8:13593618-13594175(+) (11)	NA	NA	NA	AT1G70100.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3305 Blast hits to 2533 proteins in 359 species: Archae - 8; Bacteria - 641; Metazoa - 1288; Fungi - 248; Plants - 240; Viruses - 42; Other Eukaryotes - 838 (source: NCBI BLink). 	LOC_Os12g17530.1	expressed protein	Medtr5g037670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147564.1.A1_at	A	A1TS	POPTR_0005s11720	POPTR_0005s11720 (11)	scaffold_5:8535838-8537830(-) (11)	NA	NA	NA	AT2G17975.1	zinc finger (Ran-binding) family protein 	LOC_Os04g02000.1	"zinc finger family protein, putative, expressed"	Medtr8g090040.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.147567.1.A1_at	A	A1TS	POPTR_0006s13350	POPTR_0006s13350 (11)	scaffold_6:10553079-10553539(-) (11)	NA	NA	NA	AT5G02970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g17900.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr7g120960.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147580.1.A1_at	A	A1MS	POPTR_0001s10730	POPTR_0001s10730 (9)	scaffold_1:8344215-8344671(-) (9)	NA	NA	NA	AT1G64450.1	Glycine-rich protein family 	LOC_Os05g14880.1	"proline-rich family protein, putative, expressed"	Medtr5g009160.1	Harpin-induced 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147593.1.A1_s_at	A	A1TS	POPTR_0017s01700	POPTR_0017s01700 (11)	scaffold_17:1226592-1226945(+) (11)	NA	Q86GL4	Superoxide-generating NADPH oxidase heavy chain subunit B	AT1G01580.1	ferric reduction oxidase 2 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.147597.1.A1_at	A	A1TS	POPTR_0008s11820	POPTR_0008s11820 (10)	scaffold_8:7571845-7572120(+) (10)	NA	O66119	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AT3G25860.1	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os08g33440.1	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	AC233660_8.1	Biotin/lipoyl attachment; Dihydrolipoamide succinyltransferase AC233660.2 38835-37267 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.1476.2.A1_at	A	A1TS	POPTR_0011s13380	POPTR_0011s13380 (11)	scaffold_11:16143466-16145202(+) (11)	NA	Q43472	Glycine-rich RNA-binding protein blt801	AT5G54580.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g04440.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g118370.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.147607.1.A1_at	A	A1MS	POPTR_0002s11810	POPTR_0002s11810 (9)	scaffold_2:8743109-8743427(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147608.1.A1_at	A	A1TS	POPTR_0008s13980	POPTR_0008s13980 (10)	scaffold_8:9224500-9225044(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G01940.1	C2H2-like zinc finger protein 	LOC_Os09g27650.2	"ZOS9-14 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.147620.1.A1_at	A	A1TS	POPTR_0019s08450	POPTR_0019s08450 (11)	scaffold_19:10001335-10002377(+) (11)	NA	Q42656	Alpha-galactosidase	AT3G56310.1	Melibiase family protein 	LOC_Os07g48160.1	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147634.1.A1_at	A	A1TS	POPTR_0002s00870	POPTR_0002s00870 (11)	scaffold_2:402081-403236(-) (11)	NA	Q9C8E7	Glutamate receptor 3.3	AT1G42540.1	glutamate receptor 3.3 	LOC_Os02g02540.1	"glutamate receptor, putative, expressed"	Medtr3g160070.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.147643.1.A1_at	A	A1TS	POPTR_0008s16070	POPTR_0008s16070 (9)	scaffold_8:10732634-10733068(+) (9)	NA	Q09867	rRNA-processing protein efg1	AT1G04230.1	Protein of unknown function (DUF2361) 	LOC_Os03g58340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147661.1.S1_s_at	A	A1TS	POPTR_0005s10990	POPTR_0005s10990 (11)	scaffold_5:7904660-7905156(-) (11)	POPTR_0007s09260 (7)	Q42560	Aconitate hydratase 1	AT4G35830.1	aconitase 1 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr5g022930.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.147668.1.A1_a_at	A	A1TS	POPTR_0010s24020	POPTR_0010s24020 (11)	scaffold_10:20420842-20421396(+) (11)	NA	A7ENE0	Pre-mRNA-processing ATP-dependent RNA helicase prp5	AT2G28600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g05230.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr1g068500.1	"Putative ATP-dependent RNA helicase, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147674.1.A1_at	A	A1TS	POPTR_0011s14330	POPTR_0011s14330 (11)	scaffold_11:16785437-16785861(+) (11)	NA	Q9C7S7	Endoplasmic oxidoreductin-1	AT1G72280.1	endoplasmic reticulum oxidoreductins 1 	LOC_Os03g52340.1	"endoplasmic oxidoreductin-1 precursor, putative, expressed"	Medtr2g056120.1	Endoplasmic reticulum oxidoreductin 1 	GO:0044260|cellular macromolecule metabolic process||GO:0006467|protein thiol-disulfide exchange||GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0009055|electron carrier activity||GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor""||GO:0005515|protein binding"	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.147676.1.A1_at	A	A1TS	POPTR_0006s19720	POPTR_0006s19720 (11)	scaffold_6:18758776-18759822(+) (11)	NA	Q9DBG7	Signal recognition particle receptor subunit alpha	AT4G30600.1	signal recognition particle receptor alpha subunit family protein 	LOC_Os08g37444.3	"signal recognition particle receptor, putative, expressed"	Medtr8g145240.1	"AAA ATPase; Signal recognition particle receptor, alpha subunit, N-terminal "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0005047|signal recognition particle binding||GO:0005515|protein binding	GO:0005785|signal recognition particle receptor complex||GO:0071212|subsynaptic reticulum
PtpAffx.147692.1.A1_at	A	A1TS	POPTR_0017s10470	POPTR_0017s10470 (11)	scaffold_17:9881520-9881693(+) (11)	NA	NA	NA	AT5G59710.1	VIRE2 interacting protein 2 	LOC_Os03g52594.3	"CCR4-NOT transcription factor, putative, expressed"	Medtr2g114150.1	NOT2/NOT3/NOT5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.147698.1.A1_at	A	A1MS	POPTR_0001s19120	POPTR_0001s19120 (11)	scaffold_1:16536716-16537023(+) (11)	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os01g53880.6	"OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.147723.1.A1_at	A	A1TS	POPTR_0003s07220	POPTR_0003s07220 (10)	scaffold_3:8809557-8809867(+) (10)	NA	O49432	Polygalacturonase QRT3	AT4G20050.2	Pectin lyase-like superfamily protein 	LOC_Os04g52320.1	"QRT3, putative, expressed"	Medtr4g089990.1	Parallel beta-helix repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147732.1.A1_at	A	A1TS	POPTR_0002s13040	POPTR_0002s13040 (10)	scaffold_2:9694619-9695326(-) (10)	NA	D0EL35	CST complex subunit CTC1	AT4G09680.1	conserved telomere maintenance component 1 	LOC_Os09g20910.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147739.1.A1_at	A	A1TS	POPTR_0006s08520	POPTR_0006s08520 (11)	scaffold_6:6201788-6202001(-) (11)	NA	Q9LQN6	Probable protein phosphatase 2C 4	AT1G07630.1	pol-like 5 	LOC_Os03g60650.1	"protein phosphatase 2C, putative, expressed"	Medtr7g067970.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147746.1.A1_at	A	A1TS	POPTR_0015s09430	POPTR_0015s09430 (11)	scaffold_15:10649558-10650027(+) (11)	NA	Q8LPH6	Transcription factor MYB86	AT1G57560.1	myb domain protein 50 	LOC_Os01g18240.1	"MYB family transcription factor, putative, expressed"	Medtr3g114650.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147759.1.S1_s_at	A	A1TS	POPTR_0006s13660	POPTR_0006s13660 (11)	scaffold_6:10879454-10880211(+) (11)	NA	Q9LSM5	Protein SGT1 homolog At5g65490	AT5G65490.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g34740.1	"SGT1 protein, putative, expressed"	AC233845_5.1	SGT1 AC233845.2 7966-12121 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147761.1.A1_at	A	A1TS	POPTR_0007s10720	POPTR_0007s10720 (11)	scaffold_7:10763776-10764162(+) (11)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G67200.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.147763.1.A1_s_at	A	A1TS	POPTR_0007s05260	POPTR_0007s05260 (11)	scaffold_7:3386288-3387379(+) (11)	NA	NA	NA	AT1G10380.1	Putative membrane lipoprotein 	LOC_Os06g25950.1	expressed protein	Medtr5g038340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147765.1.A1_at	A	A1TS	POPTR_0012s02120	POPTR_0012s02120 (11)	scaffold_12:1737421-1738566(-) (11)	NA	Q8GZ42	Histone-lysine N-methyltransferase ATX5	AT5G53430.1	SET domain group 29 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14777.1.S1_at	A	A1TS	POPTR_0014s13390	POPTR_0014s13390 (11)	scaffold_14:9844478-9844926(-) (11)	NA	NA	NA	AT4G02940.1	"oxidoreductase, 2OG-Fe(II) oxygenase family protein "	LOC_Os05g33310.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.14778.1.S1_a_at	A	A1TS	POPTR_0003s08840	POPTR_0003s08840 (11)	scaffold_3:10184859-10185313(-) (11)	NA	NA	NA	AT1G32520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 143 Blast hits to 142 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). 	LOC_Os11g11330.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g102900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14780.1.S1_at	A	A1TS	POPTR_0017s11800	POPTR_0017s11800 (11)	scaffold_17:11674943-11675470(+) (11)	NA	Q00466	Homeobox-leucine zipper protein HAT7	AT5G15150.1	homeobox 3 	LOC_Os03g07450.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g040020.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.147823.1.A1_a_at	A	A1TS	POPTR_0018s09560	POPTR_0018s09560 (11)	scaffold_18:10491374-10491727(-) (11)	NA	Q42525	Hexokinase-1	AT4G29130.1	hexokinase 1 	LOC_Os05g45590.1	"hexokinase, putative, expressed"	Medtr4g159960.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.147844.1.A1_at	A	A1TS	POPTR_0018s03360	POPTR_0018s03360 (10)	scaffold_18:2963990-2964670(+) (10)//scaffold_714:1856-2536(+) (10)	POPTR_0714s00200 (8)	Q54YK1	Putative UDP-sugar transporter DDB_G0278631	AT4G31600.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os06g08860.1	"transporter family protein, putative, expressed"	Medtr3g133130.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147859.1.A1_at	A	A1TS	POPTR_0004s05960	POPTR_0004s05960 (11)	scaffold_4:4687491-4688630(-) (11)	NA	NA	NA	AT4G18810.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g13970.2	"Complex I intermediate-associated protein 30 domain containing protein, putative, expressed"	Medtr4g135590.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147883.1.S1_at	A	A1TS	POPTR_0011s16170	POPTR_0011s16170 (10)	scaffold_11:18098910-18099239(+) (10)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G34575.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.14790.1.A1_at	A	A1MS	POPTR_0018s11170	POPTR_0018s11170 (11)	scaffold_18:11964118-11964323(+) (11)	NA	P23326	"50S ribosomal protein L35, chloroplastic"	AT2G24090.1	Ribosomal protein L35 	LOC_Os06g43900.1	"ribosomal protein L35, putative, expressed"	Medtr8g144750.1	Ribosomal protein L35 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.14790.1.A1_s_at	A	A1TS	POPTR_0018s11170	POPTR_0018s11170 (11)	scaffold_18:11964434-11967052(+) (11)	NA	P23326	"50S ribosomal protein L35, chloroplastic"	AT2G24090.1	Ribosomal protein L35 	LOC_Os06g43900.1	"ribosomal protein L35, putative, expressed"	Medtr8g144750.1	Ribosomal protein L35 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.147900.1.S1_s_at	A	A1TS	POPTR_0011s07530	POPTR_0011s07530 (10)	scaffold_11:8368008-8369265(-) (10)	NA	P82244	"50S ribosomal protein L34, chloroplastic"	AT1G29070.1	Ribosomal protein L34 	LOC_Os01g59060.1	"50S ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.147922.1.S1_at	A	A1TS	POPTR_0019s15210	POPTR_0019s15210 (11)	scaffold_19:15772696-15773040(-) (11)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g60330.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g083650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.147925.1.S1_at	A	A1TS	POPTR_0015s04380	POPTR_0015s04380 (10)	scaffold_15:4502167-4503804(-) (10)	POPTR_0012s04590 (6)	Q9C9U4	Mitogen-activated protein kinase 15	AT1G73670.1	MAP kinase 15 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147926.1.S1_s_at	A	A1TS	POPTR_0025s00560	POPTR_0025s00560 (11)	scaffold_25:253779-255552(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.147926.2.S1_at	A	A1TS	POPTR_0006s06180	POPTR_0006s06180 (11)	scaffold_6:4396091-4397791(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.147933.1.S1_at	A	A1TS	POPTR_0004s04820	POPTR_0004s04820 (11)	scaffold_4:3572952-3575111(-) (11)	NA	P53535	"Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic"	AT3G46970.1	alpha-glucan phosphorylase 2 	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr2g017970.1	"Glycosyl transferase, family 35; Amino acid-binding ACT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147935.1.S1_at	A	A1TS	POPTR_0003s07550	POPTR_0003s07550 (10)	scaffold_3:9120632-9122299(+) (10)	NA	Q9FGL2	Aquaporin TIP2-3	AT5G47450.1	tonoplast intrinsic protein 2;3 	LOC_Os02g44080.1	"aquaporin protein, putative, expressed"	Medtr5g012870.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.147936.1.S1_s_at	A	A1TS	POPTR_0014s16670	POPTR_0014s16670 (11)	scaffold_14:12768379-12769420(+) (11)	NA	Q8S4Y1	"Acetyl-CoA acetyltransferase, cytosolic 1"	AT5G48230.2	acetoacetyl-CoA thiolase 2 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	Medtr5g106000.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147937.1.S1_at	A	A1TS	POPTR_0008s16320	POPTR_0008s16320 (10)	scaffold_8:10929907-10930303(-) (10)	NA	Q8RY18	MATH domain-containing protein At5g43560	AT1G04300.1	TRAF-like superfamily protein 	LOC_Os12g40520.1	"MATH domain containing protein, expressed"	Medtr1g064840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147944.1.S1_s_at	A	A2TS	POPTR_0683s00200	POPTR_0683s00200 (11)//POPTR_0010s09840 (10)	scaffold_10:10465757-10466612(+) (11)//scaffold_683:7196-7753(-) (11)	NA	A6LL96	5'-nucleotidase surE	AT4G14930.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os07g10460.2	"5-nucleotidase surE, putative, expressed"	Medtr1g132450.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.147946.1.S1_at	A	A1TS	POPTR_0001s39210	POPTR_0001s39210 (11)	scaffold_1:38414082-38414611(+) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G78570.1	rhamnose biosynthesis 1 	LOC_Os03g17000.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.147958.1.S1_at	A	A2TS	POPTR_0008s12940	POPTR_0008s12940 (11)//POPTR_0010s12190 (11)	scaffold_10:12250709-12251075(+) (11)//scaffold_8:8432611-8432982(-) (11)	NA	Q9SXS2	Probable sulfate transporter 3.3	AT1G23090.1	sulfate transporter 91 	LOC_Os04g55800.1	"sulfate transporter, putative, expressed"	AC234703_12.1	Sulphate anion transporter AC234703.1 74838-69482 E EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.147961.1.S1_at	A	A1TS	POPTR_0006s11560	POPTR_0006s11560 (11)	scaffold_6:8766276-8766702(-) (11)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147971.1.S1_s_at	A	A1TS	POPTR_0008s18260	POPTR_0008s18260 (11)	scaffold_8:12226985-12227789(-) (11)	POPTR_0010s06160 (7)	O04450	T-complex protein 1 subunit epsilon	AT1G24510.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g36700.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.147982.1.S1_s_at	A	A1TS	POPTR_0002s19110	POPTR_0002s19110 (11)	scaffold_14:8262749-8263252(+) (10)//scaffold_2:15034195-15034680(+) (11)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g133540.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147996.1.S1_at	A	A1TS	POPTR_0007s06160	POPTR_0007s06160 (11)	scaffold_7:4307626-4307688(-) (11)	NA	NA	NA	AT2G22120.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os11g39130.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g100910.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147997.1.S1_a_at	A	A2TS	POPTR_0006s07620	POPTR_0018s14070 (11)//POPTR_0006s07620 (11)	scaffold_18:14318490-14319724(-) (11)//scaffold_6:5537878-5539090(-) (11)	NA	NA	NA	AT2G19160.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g45110.1	"DNA binding protein, putative, expressed"	Medtr8g129570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.147997.1.S1_at	A	A1TS	POPTR_0018s14070	POPTR_0018s14070 (11)	scaffold_18:14317494-14320911(-) (11)	NA	NA	NA	AT2G19160.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g45110.1	"DNA binding protein, putative, expressed"	Medtr8g129570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.147997.2.S1_a_at	A	A2TS	POPTR_0006s07620	POPTR_0018s14070 (11)//POPTR_0006s07620 (11)	scaffold_18:14319663-14319724(-) (11)//scaffold_6:5539029-5539090(-) (11)	NA	NA	NA	AT2G19160.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g45110.1	"DNA binding protein, putative, expressed"	Medtr8g129570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.14802.1.A1_s_at	A	A1TS	POPTR_0010s21910	POPTR_0010s21910 (11)	scaffold_10:19019454-19020517(+) (11)	NA	Q9M5L0	60S ribosomal protein L35	AT2G39390.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.14802.2.A1_at	A	A1MS	POPTR_0008s04870	POPTR_0008s04870 (9)	scaffold_8:2819545-2819577(-) (9)	NA	Q9M5L0	60S ribosomal protein L35	AT2G39390.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.148023.1.S1_at	A	A1TS	POPTR_0001s00990	POPTR_0001s00990 (10)	scaffold_1:787511-790614(-) (10)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.148045.1.S1_s_at	A	A1TS	POPTR_0007s00300	POPTR_0007s00300 (10)	scaffold_7:84386-85657(-) (10)	NA	P46519	Desiccation protectant protein Lea14 homolog	AT2G44060.2	"Late embryogenesis abundant protein, group 2 "	LOC_Os07g17120.1	"late embryogenesis abundant protein, putative, expressed"	Medtr5g095950.1	Late embryogenesis abundant protein 2 	GO:0009269|response to desiccation	NA	NA
PtpAffx.148075.1.S1_s_at	A	A1MS	POPTR_0002s24330	POPTR_0002s24330 (10)	scaffold_2:21731985-21733388(+) (10)	NA	Q8LBL5	E3 ubiquitin-protein ligase PRT1	AT3G24800.1	proteolysis 1 	LOC_Os02g40810.1	"Zinc finger, ZZ type domain containing protein, expressed"	Medtr4g023530.1	"Zinc finger, ZZ-type; Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148088.1.S1_s_at	A	A1TS	POPTR_0010s04820	POPTR_0010s04820 (11)	scaffold_10:5978172-5978740(-) (11)	NA	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.14809.1.S1_at	A	A1TS	POPTR_0016s02430	POPTR_0016s02430 (11)	scaffold_16:1193010-1193683(-) (11)	NA	P42856	14 kDa zinc-binding protein	AT3G56490.1	HIS triad family protein 3 	LOC_Os01g59750.1	"histidine triad family protein, putative, expressed"	Medtr6g017890.1	Histidine triad (HIT) protein; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14809.2.S1_at	A	A2TS	POPTR_0001s46870	POPTR_0001s46870 (11)//POPTR_0011s16520 (9)	scaffold_1:47241296-47242412(+) (11)//scaffold_11:18396507-18397665(+) (9)	NA	P18025	Tubulin beta-1 chain	AT5G62700.1	tubulin beta chain 3 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.148108.1.S1_at	A	A1TS	POPTR_0006s21950	POPTR_0006s21950 (10)	scaffold_6:20914168-20915100(-) (10)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148122.1.S1_at	A	A1TS	POPTR_0010s08390	POPTR_0010s08390 (10)	scaffold_10:9325333-9326877(-) (10)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.148150.1.S1_at	A	A1TS	POPTR_0016s04900	POPTR_0016s04900 (11)	scaffold_16:2953483-2955470(-) (11)	NA	Q6DGZ0	Coiled-coil domain-containing protein 75	AT3G57910.1	D111/G-patch domain-containing protein 	LOC_Os08g39880.1	"G-patch domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.148198.1.S1_at	A	A1TS	POPTR_0004s02950	POPTR_0004s02950 (10)	scaffold_4:1967008-1968027(-) (10)	NA	NA	NA	AT2G44870.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g41940.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1482.1.S1_s_at	A	A1TS	POPTR_0004s16080	POPTR_0004s16080 (11)	scaffold_4:16528800-16529838(-) (11)	NA	P31022	Ras-related protein Rab7	AT3G18820.1	RAB GTPase homolog G3F 	LOC_Os05g44050.1	"ras-related protein, putative, expressed"	Medtr4g095400.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.1482.2.S1_a_at	A	A1TS	POPTR_0009s11790	POPTR_0009s11790 (11)	scaffold_9:9711968-9712577(-) (11)	NA	P31022	Ras-related protein Rab7	AT3G18820.1	RAB GTPase homolog G3F 	LOC_Os05g44050.1	"ras-related protein, putative, expressed"	Medtr4g095400.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.148264.1.S1_at	A	A1TS	POPTR_0014s07570	POPTR_0014s07570 (11)	scaffold_14:5689776-5691135(+) (11)	NA	P37225	"NAD-dependent malic enzyme 59 kDa isoform, mitochondrial"	AT4G00570.1	NAD-dependent malic enzyme 2 	LOC_Os10g35960.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g034840.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.148281.1.S1_s_at	A	A1TS	POPTR_0013s04460	POPTR_0013s04460 (11)	scaffold_13:3058314-3059017(+) (11)	NA	Q9USQ7	Meiotically up-regulated gene 71 protein	AT3G04480.1	endoribonucleases 	LOC_Os02g56565.1	"endoribonuclease, putative, expressed"	Medtr7g135060.1	Endoribonuclease L-PSP; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148282.1.S1_s_at	A	A1TS	POPTR_0002s11250	POPTR_0002s11250 (11)	scaffold_2:8327310-8327578(+) (11)	NA	Q9ZRR5	Tubulin alpha-3 chain	AT1G50010.1	tubulin alpha-2 chain 	LOC_Os03g51600.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr8g102250.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.148326.1.S1_s_at	A	A1TS	POPTR_0011s04770	POPTR_0011s04770 (11)	scaffold_11:4741641-4741995(-) (11)	NA	Q92541	RNA polymerase-associated protein RTF1 homolog	AT1G61040.1	plus-3 domain-containing protein 	LOC_Os12g35030.1	"plus-3 domain containing protein, expressed"	Medtr7g117510.1	Plus-3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.148333.1.S1_s_at	A	A1TS	POPTR_0012s09060	POPTR_0012s09060 (11)	scaffold_12:10125408-10125690(+) (11)	NA	NA	NA	AT5G63040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g50830.1	expressed protein	Medtr3g114280.1	"T1N15.7, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148337.1.S1_at	A	A1TS	POPTR_0018s00880	POPTR_0018s00880 (11)	scaffold_18:829967-831995(+) (11)	POPTR_0006s26050 (6)	NA	NA	AT5G25590.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g32760.1	"BZIP protein, putative, expressed"	Medtr3g132720.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148338.1.S1_at	A	A1TS	POPTR_0004s16250	POPTR_0004s16250 (11)	scaffold_4:16656842-16657257(-) (11)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
PtpAffx.148341.1.S1_s_at	A	A1TS	POPTR_0019s09140	POPTR_0019s09140 (11)	scaffold_19:10698391-10698931(-) (11)	NA	Q9XF89	"Chlorophyll a-b binding protein CP26, chloroplastic"	AT4G10340.1	light harvesting complex of photosystem II 5 	LOC_Os11g13890.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g070180.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.148399.1.S1_at	A	A1TS	POPTR_0010s14470	POPTR_0010s14470 (11)	scaffold_10:14069489-14069877(-) (11)	NA	NA	NA	AT3G25545.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11970.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148416.1.S1_s_at	A	A1TS	POPTR_0001s22160	POPTR_0001s22160 (10)	scaffold_1:20802580-20803572(-) (10)	NA	Q3T0E5	Adipocyte plasma membrane-associated protein	AT1G08470.1	strictosidine synthase-like 3 	LOC_Os03g53950.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.148421.1.S1_at	A	A1TS	POPTR_0001s41010	POPTR_0001s41010 (11)	scaffold_1:40628161-40628649(-) (11)	NA	NA	NA	AT4G27500.1	proton pump interactor 1 	LOC_Os08g30060.2	"proton pump interactor, putative, expressed"	Medtr2g100530.1	"proton pump interactor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148428.1.S1_s_at	A	A1TS	POPTR_0003s05070	POPTR_0003s05070 (10)	scaffold_3:6272360-6273215(-) (10)	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT1G52220.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	LOC_Os01g55570.1	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148436.1.S1_at	A	A1TS	POPTR_0010s25860	POPTR_0010s25860 (11)	scaffold_10:21331426-21333046(+) (11)	NA	Q9LK31	Kelch repeat-containing protein At3g27220	AT1G51540.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g41020.1	"kelch repeat protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148444.1.S1_at	A	A1TS	POPTR_0004s18970	POPTR_0004s18970 (11)	scaffold_1288:5363-5760(-) (9)//scaffold_4:18758021-18758870(-) (11)//scaffold_4:18792580-18793410(-) (11)	POPTR_0004s18960 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148447.1.S1_at	A	A1TS	POPTR_0001s35220	POPTR_0001s35220 (9)	scaffold_1:33515267-33516344(+) (9)	NA	Q9LK94	"Probable monodehydroascorbate reductase, cytoplasmic isoform 2"	AT3G27820.1	monodehydroascorbate reductase 4 	LOC_Os02g47800.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.148459.1.S1_at	A	A2TS	POPTR_0019s10160	POPTR_0019s10160 (11)//POPTR_0388s00210 (11)	scaffold_19:11740122-11740654(-) (11)//scaffold_388:16407-16939(-) (11)	NA	Q69ZF3	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.148460.1.S1_at	A	A1TS	POPTR_0014s00900	POPTR_0014s00900 (11)	scaffold_14:818761-819862(-) (11)	NA	Q9VCY8	ADIPOR-like receptor CG5315	AT4G37680.2	heptahelical protein 4 	LOC_Os03g13040.1	"haemolysin-III, putative, expressed"	Medtr5g015420.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
PtpAffx.148470.1.S1_at	A	A1TS	POPTR_0010s14840	POPTR_0010s14840 (11)	scaffold_10:14316304-14316788(+) (11)	NA	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr5g049410.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.148471.1.S1_at	A	A1TS	POPTR_0011s00790	POPTR_0011s00790 (11)	scaffold_11:407715-408164(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT4G22290.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148480.1.S1_s_at	A	A1TS	POPTR_0017s08570	POPTR_0017s08570 (11)	scaffold_17:7156759-7157276(+) (11)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT4G13850.3	glycine-rich RNA-binding protein 2 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g105170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.148504.1.S1_at	A	A1TS	POPTR_0017s04590	POPTR_0017s04590 (11)	scaffold_17:3523620-3526555(+) (11)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os11g35040.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.148515.1.S1_s_at	A	A1TS	POPTR_0019s04700	POPTR_0019s04700 (11)	scaffold_19:4897321-4897362(+) (11)	NA	NA	NA	AT2G39050.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os07g48500.1	"stress responsive protein, putative, expressed"	Medtr7g100110.1	"glycoamidase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148582.1.S1_at	A	A1TS	POPTR_0009s05910	POPTR_0009s05910 (11)	scaffold_9:5865553-5867046(+) (11)	NA	O16810	Origin recognition complex subunit 1	AT4G14700.1	origin recognition complex 1 	LOC_Os06g08790.1	"ORC1 - Putative origin recognition complex subunit 1, expressed"	NA	NA	NA	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.148585.1.S1_at	A	A1TS	POPTR_0001s27170	POPTR_0001s27170 (11)	scaffold_1:26097951-26098630(+) (11)	NA	Q9BZE9	Tether containing UBX domain for GLUT4	AT3G27310.1	plant UBX domain-containing protein 1 	LOC_Os04g40870.1	"alveolar soft part sarcoma chromosome region, candidate 1, putative, expressed"	Medtr6g024990.1	UBX 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1486.1.S1_at	A	A1TS	POPTR_0006s19750	POPTR_0006s19750 (11)	scaffold_6:18775157-18775571(-) (11)	NA	Q8W4A5	"APO protein 2, chloroplastic"	AT5G57930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os02g50010.1	"APO, putative, expressed"	Medtr2g104000.1	"Protein of unknown function DUF794, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1486.2.S1_at	A	A1TS	POPTR_0018s11560	POPTR_0018s11560 (9)	scaffold_18:12246154-12247997(-) (9)	NA	Q8W4A5	"APO protein 2, chloroplastic"	AT5G57930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os02g50010.1	"APO, putative, expressed"	Medtr2g104000.1	"Protein of unknown function DUF794, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1486.3.S1_a_at	A	A1MS	POPTR_0006s19750	POPTR_0006s19750 (11)	scaffold_6:18778154-18778421(-) (11)	NA	Q8W4A5	"APO protein 2, chloroplastic"	AT5G57930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os02g50010.1	"APO, putative, expressed"	Medtr2g104000.1	"Protein of unknown function DUF794, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148601.1.S1_s_at	A	A1TS	POPTR_0006s05210	POPTR_0006s05210 (9)	scaffold_6:3671202-3673896(-) (9)	NA	Q9LVJ7	Nuclear transcription factor Y subunit A-6	AT3G14020.1	"nuclear factor Y, subunit A6 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.14861.1.S1_at	A	A1TS	POPTR_0004s13060	POPTR_0004s13060 (11)	scaffold_4:12386077-12388347(-) (11)	NA	Q6FRZ3	Endoplasmic reticulum vesicle protein 25	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.148620.1.S1_s_at	A	A1TS	POPTR_0009s04880	POPTR_0009s04880 (11)	scaffold_9:5112281-5112668(-) (11)	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148643.2.A1_a_at	A	A1TS	POPTR_0014s03390	POPTR_0014s03390 (11)	scaffold_14:2726304-2726659(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT1G47490.1	RNA-binding protein 47C 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g148180.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.148676.1.S1_at	A	A3TS	POPTR_0008s18790	POPTR_0008s18810 (11)//POPTR_0008s18790 (11)//POPTR_0008s18870 (11)	scaffold_8:12821589-12822031(-) (11)//scaffold_8:12854424-12854866(-) (11)//scaffold_8:12884362-12884804(-) (11)	NA	Q9LIP4	Cytochrome P450 71B36	AT3G26320.1	"cytochrome P450, family 71, subfamily B, polypeptide 36 "	LOC_Os03g63310.1	"cytochrome P450 71E1, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.14872.1.S1_at	A	A1TS	POPTR_0014s17600	POPTR_0014s17600 (11)	scaffold_14:13861771-13862517(+) (11)	NA	NA	NA	AT3G07470.1	"Protein of unknown function, DUF538 "	LOC_Os01g68500.1	expressed protein	Medtr7g043420.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148735.1.S1_s_at	A	A1TS	POPTR_0004s04170	POPTR_0004s04170 (11)	scaffold_4:2997745-2998724(-) (11)	NA	P60027	General transcription factor IIH subunit 4	AT4G17020.1	transcription factor-related 	LOC_Os04g58350.1	"TFIIH basal transcription factor complex p52 subunit, putative, expressed"	Medtr3g097740.1	Transcription factor Tfb2 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0003702|RNA polymerase II transcription factor activity	GO:0005634|nucleus
PtpAffx.148742.1.S1_at	A	A1TS	POPTR_0010s10410	POPTR_0010s10410 (11)	scaffold_10:10927084-10928159(-) (11)	NA	NA	NA	AT2G02910.1	Protein of unknown function (DUF616) 	LOC_Os11g09170.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	AC146568_8.1	Protein of unknown function DUF616 AC146568.11 42302-43568 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148753.1.S1_s_at	A	A1TS	POPTR_0013s08910	POPTR_0013s08910 (11)	scaffold_13:8420272-8421989(+) (11)	NA	Q5PPG7	Ligatin	AT1G71350.1	eukaryotic translation initiation factor SUI1 family protein 	LOC_Os02g35160.1	"ligatin, putative, expressed"	Medtr4g031820.1	Translation initiation factor SUI1; PUA 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.148754.1.S1_s_at	A	A1TS	POPTR_0001s05030	POPTR_0001s05030 (11)	scaffold_1:3878247-3879131(+) (11)	NA	Q9ZPV5	Nucleolar complex protein 2 homolog	AT2G18220.1	Noc2p family 	LOC_Os10g35280.1	"nucleolar complex protein 2, putative, expressed"	Medtr1g140790.1	Protein of unknown function UPF0120 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148758.1.S1_s_at	A	A1TS	POPTR_0013s14810	POPTR_0013s14810 (11)	scaffold_13:14927690-14928071(-) (11)	NA	Q9FJC1	Putative FBD-associated F-box protein At5g53630	AT5G53635.1	F-box/RNI-like/FBD-like domains-containing protein 	LOC_Os07g06500.1	"OsFBL34 - F-box domain and LRR containing protein, expressed"	AC229702_9.1	Rhodopsin-like GPCR superfamily; Cyclin-like F-box; FBD; AC229702.6 88103-90335 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148759.1.S1_at	A	A1TS	POPTR_0002s24100	POPTR_0002s24100 (9)	scaffold_2:21542145-21542792(+) (9)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.148768.1.S1_s_at	A	A1TS	POPTR_0001s16350	POPTR_0001s16350 (11)	scaffold_1:13136615-13137080(-) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT3G14270.1	phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os08g34950.1	"chaperonin Cpn60/TCP-1, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.148770.1.S1_at	A	A1TS	POPTR_0013s10510	POPTR_0013s10510 (11)	scaffold_13:10829120-10831877(-) (11)	POPTR_0019s10040 (6)	P37142	"Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment)"	AT4G19710.2	aspartate kinase-homoserine dehydrogenase ii 	LOC_Os08g25390.1	"bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g132760.2	"Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016491|oxidoreductase activity||GO:0050661|NADP or NADPH binding	NA
PtpAffx.148772.1.S1_at	A	A1TS	POPTR_0018s06620	POPTR_0018s06620 (11)	scaffold_18:6655788-6656302(-) (11)	NA	Q94A82	"Nudix hydrolase 19, chloroplastic"	AT5G20070.1	nudix hydrolase homolog 19 	LOC_Os06g04910.1	"hydrolase, NUDIX family protein, expressed"	Medtr8g119760.1	"Isopentenyl-diphosphate delta-isomerase, type 1; ; "	NA	GO:0016787|hydrolase activity||GO:0046872|metal ion binding	NA
PtpAffx.148807.1.S1_at	A	A1TS	POPTR_0017s02080	POPTR_0017s02080 (10)	scaffold_17:1518341-1519584(+) (10)	NA	P49293	"Phytoene synthase, chloroplastic"	AT5G17230.2	PHYTOENE SYNTHASE 	LOC_Os06g51290.3	"phytoene synthase, chloroplast precursor, putative, expressed"	Medtr5g084540.1	Squalene/phytoene synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.148851.1.S1_at	A	A1TS	POPTR_0004s08450	POPTR_0004s08450 (11)	scaffold_4:6993126-6993399(+) (11)	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os03g12250.1	"atypical receptor-like kinase MARK, putative, expressed"	Medtr5g085840.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.148855.1.S1_s_at	A	A1TS	POPTR_0018s03740	POPTR_0018s03740 (11)	scaffold_18:3189194-3189502(-) (11)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT5G24870.2	RING/U-box superfamily protein 	LOC_Os06g48040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g133350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148856.1.S1_s_at	A	A1TS	POPTR_0018s14640	POPTR_0018s14640 (11)	scaffold_18:14777710-14778874(+) (11)	NA	Q6MAS9	Glycogen synthase	AT4G18240.1	starch synthase 4 	LOC_Os01g52250.4	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.148858.1.S1_at	A	A1TS	POPTR_0010s13830	POPTR_0010s13830 (11)	scaffold_10:13553194-13553445(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT1G25510.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g04710.1	"aspartic proteinase, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14886.1.S1_at	A	A1TS	POPTR_0008s09280	POPTR_0008s09280 (9)	scaffold_8:5748651-5749086(+) (10)	NA	NA	NA	AT1G13930.2	Involved in response to salt stress.  Knockout mutants are hypersensitive to salt stress. 	LOC_Os03g11220.1	"keratin, type I cytoskeletal 9, putative, expressed"	Medtr4g115570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148862.1.S1_at	A	A1TS	POPTR_0006s13060	POPTR_0006s13060 (11)	scaffold_6:10281426-10283604(+) (11)	NA	O60291	E3 ubiquitin-protein ligase MGRN1	AT3G09770.1	RING/U-box superfamily protein 	LOC_Os03g15000.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148864.1.S1_at	A	A1TS	POPTR_0002s16440	POPTR_0002s16440 (10)	scaffold_2:12301635-12302655(-) (10)	NA	Q49YU2	Diacylglycerol kinase	AT2G46090.1	Diacylglycerol kinase family protein 	LOC_Os03g03400.1	"diacylglycerol kinase, putative, expressed"	Medtr7g088910.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.148868.2.S1_at	A	A1MS	POPTR_0012s07120	POPTR_0012s07120 (9)	scaffold_12:7815226-7815524(-) (9)	NA	Q9UPY8	Microtubule-associated protein RP/EB family member 3	AT3G47690.1	microtubule end binding protein EB1A 	LOC_Os04g54940.1	"ATEB1A-like microtubule associated protein, putative, expressed"	Medtr8g112510.1	Calponin-like actin-binding; EB1 	NA	GO:0008017|microtubule binding	NA
PtpAffx.148889.1.S1_s_at	A	A1TS	POPTR_0009s13510	POPTR_0009s13510 (11)	scaffold_9:10734033-10734739(+) (11)	NA	P28493	Pathogenesis-related protein 5	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os08g43510.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148894.1.S1_at	A	A1TS	POPTR_0005s12450	POPTR_0005s12450 (11)	scaffold_5:9217372-9217820(-) (11)	NA	NA	NA	AT3G01360.2	Family of unknown function (DUF716)  	LOC_Os06g13160.1	"viral-response family protein, expressed"	Medtr2g026770.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14893.1.S1_at	A	A1TS	POPTR_0001s22450	POPTR_0001s22450 (11)	scaffold_1:21204032-21204529(+) (11)	NA	Q7XJU0	Uncharacterized basic helix-loop-helix protein At1g64625	AT2G27230.2	transcription factor-related 	LOC_Os01g64560.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148931.1.S1_at	A	A1TS	POPTR_0009s10850	POPTR_0009s10850 (11)	scaffold_9:9202152-9204953(-) (11)	NA	Q5F457	WW domain-binding protein 4	AT1G49590.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os06g11170.1	"formin-binding protein-related, putative, expressed"	Medtr4g129230.1	"Zinc finger, C2H2-type matrin "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.148932.1.S1_at	A	A1TS	POPTR_0016s01490	POPTR_0016s01490 (11)	scaffold_16:679409-680530(+) (11)	POPTR_0006s01290 (7)	A7XDQ9	"Probable beta-1,3-galactosyltransferase 20"	AT4G21060.2	Galactosyltransferase family protein 	LOC_Os08g03670.1	"galactosyltransferase family protein, putative, expressed"	Medtr2g022300.1	"Glycosyl transferase, family 31; Arginase/agmatinase/formiminoglutamase; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.148941.1.S1_at	A	A1TS	POPTR_0018s12730	POPTR_0018s12730 (9)	scaffold_18:13242329-13245227(-) (9)	NA	NA	NA	AT5G32440.3	Ubiquitin system component Cue protein 	LOC_Os02g09180.1	"CUE domain containing protein, expressed"	Medtr4g005650.1	Ubiquitin system component Cue; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148947.1.A1_a_at	A	A1TS	POPTR_0001s22420	POPTR_0001s22420 (9)	scaffold_1:21078004-21078155(-) (9)	NA	Q8BJM3	Growth inhibition and differentiation-related protein 88 homolog	AT5G22120.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73470.1	"growth inhibition and differentiation-related protein 88, putative, expressed"	Medtr4g067270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148947.1.A1_at	A	A1TS	POPTR_0001s22420	POPTR_0001s22420 (11)	scaffold_1:21077889-21079689(-) (11)	NA	Q8BJM3	Growth inhibition and differentiation-related protein 88 homolog	AT5G22120.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73470.1	"growth inhibition and differentiation-related protein 88, putative, expressed"	Medtr4g067270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14895.1.S1_at	A	A1TS	POPTR_0005s07140	POPTR_0005s07140 (11)	scaffold_5:4792919-4794604(-) (11)	NA	Q9MA92	Filament-like plant protein 3	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os07g32340.3	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148953.1.A1_at	A	A1TS	POPTR_0008s20330	POPTR_0008s20330 (9)	scaffold_8:14083081-14083617(-) (9)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT5G18930.1	Adenosylmethionine decarboxylase family protein 	LOC_Os05g04990.1	"adenosylmethionine decarboxylase, putative, expressed"	Medtr8g140130.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.148964.1.A1_s_at	A	A1TS	POPTR_0013s06110	POPTR_0013s06110 (11)	scaffold_13:4532808-4534248(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT1G58030.1	cationic amino acid transporter 2 	LOC_Os12g42850.1	"amino acid permease, putative, expressed"	Medtr7g103380.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.148967.1.A1_at	A	A1TS	POPTR_0009s06140	POPTR_0009s06140 (11)	scaffold_9:6019863-6020286(+) (11)	NA	Q9SV01	F-box/WD-40 repeat-containing protein At3g52030	AT3G52030.2	F-box family protein with WD40/YVTN repeat doamin 	LOC_Os11g07970.1	"OsFBW2 - F-box domain and WD40 repeat containing protein, expressed"	Medtr3g040900.1	Cyclin-like F-box; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148981.1.A1_at	A	A1MS	POPTR_0013s04620	POPTR_0013s04620 (11)	scaffold_13:3181469-3182015(+) (11)	NA	P72991	ATP-dependent zinc metalloprotease FtsH 3	AT3G04340.1	FtsH extracellular protease family 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr1g094060.1	Peptidase M41; Caspase Recruitment; AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.148985.1.A1_s_at	A	A1TS	POPTR_0010s16250	POPTR_0010s16250 (11)	scaffold_10:15227915-15229124(-) (11)	NA	NA	NA	AT3G17340.1	ARM repeat superfamily protein 	LOC_Os11g47320.1	"protein transporter, putative, expressed"	Medtr8g134520.1	"protein transporter, related "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.149.1.A1_at	A	A1TS	POPTR_0017s12000	POPTR_0017s12000 (11)	scaffold_17:12148546-12148993(+) (11)	NA	P47082	Vacuolar amino acid transporter 1	AT5G15240.1	Transmembrane amino acid transporter family protein 	LOC_Os04g38680.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g010030.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149007.1.A1_at	A	A1TS	POPTR_0016s09320	POPTR_0016s09320 (9)	scaffold_16:7323330-7323449(-) (9)	NA	Q7ZYA2	Transcription initiation factor TFIID subunit 8	AT4G34340.1	TBP-associated factor 8 	LOC_Os12g38620.3	"bromodomain associated family protein, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14906.1.A1_at	A	A1TS	POPTR_0001s21890	POPTR_0001s21890 (11)	scaffold_1:20380721-20381247(-) (11)	NA	Q9C992	3-ketoacyl-CoA synthase 7	AT1G71160.1	3-ketoacyl-CoA synthase 7 	LOC_Os03g12030.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr2g007100.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.149060.1.A1_at	A	A1TS	POPTR_0005s11220	POPTR_0005s11220 (9)	scaffold_5:8143206-8143613(+) (9)	NA	Q5XF11	F-box protein At4g35930	AT4G35930.1	F-box family protein 	LOC_Os10g30280.1	"OsFBX386 - F-box domain containing protein, expressed"	Medtr8g089370.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149071.1.S1_s_at	A	A1TS	POPTR_0001s38580	POPTR_0001s38580 (11)	scaffold_1:37782796-37783367(+) (11)	NA	NA	NA	AT1G73140.1	Plant protein of unknown function (DUF828) 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr5g090760.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149143.1.A1_at	A	A1TS	POPTR_0008s04670	POPTR_0008s04670 (11)	scaffold_8:2674563-2674985(-) (11)	NA	Q9LHJ9	Probable protein phosphatase 2C 38	AT3G12620.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr1g146560.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149167.1.S1_s_at	A	A1TS	POPTR_0002s07880	POPTR_0002s07880 (11)	scaffold_2:5414216-5415177(+) (11)	POPTR_0005s20530 (6)	Q9FR99	1-aminocyclopropane-1-carboxylate oxidase	AT1G77330.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g05680.1	"1-aminocyclopropane-1-carboxylate oxidase, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.149183.1.S1_at	A	A1TS	POPTR_0015s09800	POPTR_0015s09800 (9)	scaffold_15:10917608-10917957(+) (9)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os04g40520.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14923.1.A1_at	A	A1TS	POPTR_0006s20700	POPTR_0006s20700 (11)	scaffold_6:19694408-19694744(+) (11)	NA	Q84JD5	Probable protein phosphatase 2C 68	AT5G06750.3	Protein phosphatase 2C family protein 	LOC_Os04g49490.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149231.1.S1_a_at	A	A1MS	POPTR_0006s13580	POPTR_0006s13580 (11)	scaffold_6:10798034-10798188(-) (11)	NA	Q8H8U5	Protein IN2-1 homolog B	AT5G02790.1	Glutathione S-transferase family protein 	LOC_Os03g17470.1	"IN2-1 protein, putative, expressed"	AC235022_17.1	Thioredoxin fold; Thioredoxin-like fold AC235022.1 105935-107691 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149265.1.S1_s_at	A	A1TS	POPTR_0001s29460	POPTR_0001s29460 (11)	scaffold_1:28128930-28130036(+) (11)	NA	P93732	Proline iminopeptidase	AT2G14260.1	proline iminopeptidase 	LOC_Os05g43830.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr2g010520.1	"Peptidase S33, prolyl aminopeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149278.1.S1_s_at	A	A1TS	POPTR_0010s06270	POPTR_0010s06270 (11)	scaffold_10:7683874-7684647(-) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT1G67720.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	Medtr7g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.149281.1.S1_at	A	A1TS	POPTR_0002s06820	POPTR_0002s06820 (11)	scaffold_2:4580942-4581656(+) (11)	NA	NA	NA	AT1G21090.1	Cupredoxin superfamily protein 	NA	NA	Medtr1g125000.1	Cupredoxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149305.1.S1_at	A	A1MS	POPTR_0019s04790	POPTR_0019s04790 (9)	scaffold_19:5010664-5011050(+) (9)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os03g59760.2	"RING finger protein 126, putative, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149310.1.S1_at	A	A1TS	POPTR_0004s23540	POPTR_0004s23540 (11)	scaffold_4:22226343-22226605(-) (11)	POPTR_0022s00320 (8)	NA	NA	AT1G09610.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149323.1.S1_at	A	A1TS	POPTR_0012s10080	POPTR_0012s10080 (9)	scaffold_12:10930211-10930787(-) (9)	NA	NA	NA	AT5G14120.1	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149374.1.S1_at	A	A1TS	POPTR_0001s10560	POPTR_0001s10560 (10)	scaffold_1:8217536-8217708(+) (10)	NA	Q42059	Endoglucanase 6	AT1G64390.1	glycosyl hydrolase 9C2 	LOC_Os01g12070.1	"endoglucanase precursor, putative, expressed"	Medtr3g110130.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0030246|carbohydrate binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0005576|extracellular region
PtpAffx.149380.1.S1_at	A	A1TS	POPTR_0011s16690	POPTR_0011s16690 (11)	scaffold_11:18475966-18477339(+) (11)	NA	Q5ZM25	Obg-like ATPase 1	AT1G30580.1	GTP binding 	LOC_Os08g09940.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.149382.1.S1_at	A	A1TS	POPTR_0010s02880	POPTR_0010s02880 (11)	scaffold_10:3366115-3366368(+) (11)	NA	NA	NA	AT5G18920.1	Cox19-like CHCH family protein 	NA	NA	Medtr2g026000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149393.1.S1_at	A	A1TS	POPTR_0006s07550	POPTR_0006s07550 (11)	scaffold_6:5472578-5473641(+) (11)	NA	NA	NA	AT4G29960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51780.1	expressed protein	Medtr2g042660.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149416.1.S1_at	A	A1TS	POPTR_0002s24730	POPTR_0002s24730 (11)	scaffold_2:22015531-22015864(+) (11)	NA	O14270	Fork head transcription factor 1	AT3G07220.1	SMAD/FHA domain-containing protein  	LOC_Os08g41710.1	"FHA domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149451.1.S1_at	A	A1TS	POPTR_0001s04540	POPTR_0001s04540 (10)	scaffold_1:3558884-3559227(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149452.1.S1_at	A	A1TS	POPTR_0005s23510	POPTR_0005s23510 (11)	scaffold_5:22255275-22255801(+) (11)	NA	NA	NA	AT1G03080.1	kinase interacting (KIP1-like) family protein 	LOC_Os10g28610.1	"KIP1, putative, expressed"	Medtr1g083940.1	KIP1-like 	NA	NA	GO:0016020|membrane
PtpAffx.149478.1.S1_s_at	A	A1TS	POPTR_0002s08240	POPTR_0002s08240 (11)	scaffold_2:5720527-5722137(+) (11)	NA	Q42592	"L-ascorbate peroxidase S, chloroplastic/mitochondrial"	AT4G08390.2	stromal ascorbate peroxidase 	LOC_Os12g07820.1	"OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr3g100720.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.149478.2.S1_at	A	A1TS	POPTR_0005s20140	POPTR_0005s20140 (11)	scaffold_5:19187723-19188368(-) (11)	NA	Q42593	"L-ascorbate peroxidase T, chloroplastic"	AT1G77490.1	thylakoidal ascorbate peroxidase 	LOC_Os02g34810.1	"OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr3g100720.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.14948.1.S1_at	A	A1TS	POPTR_0005s26730	POPTR_0005s26730 (11)	scaffold_5:24628415-24629072(+) (11)	NA	Q9C5Y0	Phospholipase D delta	AT4G35790.2	phospholipase D delta 	LOC_Os09g37100.1	"phospholipase D, putative, expressed"	Medtr3g157400.1	C2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.14950.1.S1_at	A	A1TS	POPTR_0002s17870	POPTR_0002s17870 (10)	scaffold_2:13694840-13695201(+) (10)	NA	NA	NA	AT2G46735.1	unknown protein; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149510.2.S1_at	A	A1TS	POPTR_0005s03850	POPTR_0005s03850 (9)	scaffold_5:2558250-2558288(-) (9)	NA	O60291	E3 ubiquitin-protein ligase MGRN1	AT3G06140.1	RING/U-box superfamily protein 	LOC_Os03g15000.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149518.1.S1_s_at	A	A1TS	POPTR_0001s14500	POPTR_0001s14500 (11)	scaffold_1:11377568-11378988(-) (11)	NA	NA	NA	AT3G24160.1	putative type 1 membrane protein 	LOC_Os08g45220.1	expressed protein	Medtr2g130050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149519.1.S1_at	A	A1TS	POPTR_0005s10130	POPTR_0005s10130 (11)	scaffold_5:7231753-7232439(-) (11)	NA	B2RS91	RNA polymerase I-specific transcription initiation factor RRN3	AT2G34750.1	RNA polymerase I specific transcription initiation factor RRN3 protein 	LOC_Os06g47350.2	"RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed"	Medtr4g134310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14953.1.S1_at	A	A1TS	POPTR_0006s13810	POPTR_0006s13810 (11)	scaffold_6:11015374-11016403(-) (11)	NA	Q9URW6	SH3 domain-containing protein PJ696.02	AT3G43230.1	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os07g42500.1	"FYVE zinc finger domain containing protein, expressed"	Medtr8g133230.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149533.1.A1_at	A	A1TS	POPTR_0007s14750	POPTR_0007s14750 (9)	scaffold_7:14514969-14515607(+) (9)	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	NA	NA	Medtr5g015260.1	Phytosulfokine 	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.149533.2.S1_s_at	A	A2TS	POPTR_0007s14750	POPTR_0014s00810 (11)//POPTR_0007s14750 (11)	scaffold_14:766222-766269(+) (11)//scaffold_7:14515254-14515301(+) (11)	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	NA	NA	Medtr5g015260.1	Phytosulfokine 	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.149603.1.A1_at	A	A1TS	POPTR_0016s04480	POPTR_0016s04480 (10)	scaffold_16:2637708-2638216(-) (10)	NA	Q84JD5	Probable protein phosphatase 2C 68	AT5G06750.3	Protein phosphatase 2C family protein 	LOC_Os04g49490.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149608.1.A1_at	A	A1TS	POPTR_0018s06320	POPTR_0018s06320 (10)	scaffold_18:6138511-6140064(+) (10)	NA	Q93YV6	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform	AT5G25510.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os05g48150.1	"transposon protein, putative, unclassified, expressed"	Medtr8g118690.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.14961.1.A1_s_at	A	A12TS	POPTR_0002s21040	POPTR_0011s02200 (11)//POPTR_0011s02090 (11)//POPTR_0011s02170 (11)//POPTR_0011s02160 (11)//POPTR_0011s03690 (11)//POPTR_0011s03660 (11)//POPTR_0011s02070 (11)//POPTR_0011s03620 (11)//POPTR_2263s00200 (11)//POPTR_0002s21040 (11)//POPTR_0011s03710 (11)//POPTR_0011s02060 (11)	scaffold_11:1723684-1723792(-) (11)//scaffold_11:1734769-1734865(-) (11)//scaffold_11:1759540-1759648(-) (11)//scaffold_11:1811588-1811696(-) (11)//scaffold_11:1821216-1821324(-) (11)//scaffold_11:1852676-1852784(-) (11)//scaffold_11:3708446-3708554(-) (11)//scaffold_11:3748949-3749057(-) (11)//scaffold_11:3759635-3769510(-) (11)//scaffold_11:3783704-3783812(-) (11)//scaffold_11:3797244-3797352(-) (11)//scaffold_2:17373912-17374020(+) (11)//scaffold_2263:759-867(-) (11)	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124460.1	"EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.14963.1.A1_at	A	A1TS	POPTR_0004s01770	POPTR_0004s01770 (11)	scaffold_4:1075219-1075395(+) (11)	NA	NA	NA	AT4G21790.1	tobamovirus multiplication 1 	LOC_Os03g36790.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149641.1.A1_at	A	A1TS	POPTR_0001s44720	POPTR_0001s44720 (11)	scaffold_1:45148423-45149691(-) (11)	NA	Q59156	DNA polymerase I	AT1G50840.1	polymerase gamma 2 	LOC_Os08g07840.1	"PolI-like DNA polymerase, putative, expressed"	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.149662.1.A1_at	A	A1TS	POPTR_0016s14660	POPTR_0016s14660 (11)	scaffold_16:13824714-13825572(+) (11)	NA	Q9SWE7	V-type proton ATPase subunit E	AT4G11150.1	vacuolar ATP synthase subunit E1 	LOC_Os01g46980.1	"vacuolar ATP synthase subunit E, putative, expressed"	Medtr5g009830.1	"H+-transporting two-sector ATPase, E subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.149678.1.A1_at	A	A1TS	POPTR_0001s31800	POPTR_0001s31800 (11)	scaffold_1:30166810-30167392(-) (11)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os02g36340.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr4g120840.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
PtpAffx.149708.1.A1_at	A	A1TS	POPTR_0005s15600	POPTR_0005s15600 (11)	scaffold_5:12228334-12229235(+) (11)	NA	NA	NA	AT5G38380.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os07g18250.2	expressed protein	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.149742.1.A1_at	A	A1TS	POPTR_0002s21790	POPTR_0002s21790 (11)	scaffold_2:18397339-18397886(+) (11)	NA	Q94AD9	Zinc finger CCCH domain-containing protein 3	AT1G04990.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g092550.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.149749.1.A1_at	A	A1TS	POPTR_0015s13700	POPTR_0015s13700 (11)	scaffold_15:13538277-13538834(+) (11)	NA	NA	NA	AT5G05800.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g10550.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g093090.1	"PIF-like orf1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14975.1.S1_at	A	A1TS	POPTR_0015s01520	POPTR_0015s01520 (9)	scaffold_15:953206-953623(+) (9)	NA	Q92QQ2	ATP-dependent Clp protease ATP-binding subunit ClpX	AT5G53350.1	CLP protease regulatory subunit X 	LOC_Os02g35630.1	"AAA family ATPase, putative, expressed"	Medtr3g123850.1	"ClpX, ATPase regulatory subunit "	NA	GO:0005524|ATP binding	NA
PtpAffx.149756.1.A1_at	A	A1MS	POPTR_0010s14080	POPTR_0010s14080 (9)	scaffold_10:13782538-13783316(-) (10)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT3G25690.2	Hydroxyproline-rich glycoprotein family protein 	LOC_Os12g01449.1	"chloroplast unusual positioning protein, putative, expressed"	Medtr5g069490.1	"chloroplast unusual positioning 1B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149777.1.A1_a_at	A	A1TS	POPTR_0005s10490	POPTR_0005s10490 (11)	scaffold_5:7534009-7534735(-) (11)	NA	Q9UHC1	DNA mismatch repair protein Mlh3	AT4G35520.1	MUTL protein homolog 3 	LOC_Os09g37930.1	expressed protein	Medtr5g024260.1	DNA mismatch repair protein 	NA	GO:0005524|ATP binding	NA
PtpAffx.149804.1.A1_at	A	A1TS	POPTR_0018s00870	POPTR_0018s00870 (11)	scaffold_18:818146-819237(+) (11)	NA	NA	NA	AT5G11470.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g42460.1	"BAH domain containing protein, expressed"	Medtr3g132700.1	Bromo adjacent region 	NA	GO:0003677|DNA binding	NA
PtpAffx.149804.2.S1_a_at	A	A2TS	POPTR_0006s26040	POPTR_0018s00870 (11)//POPTR_0006s26040 (11)	scaffold_18:817671-818128(+) (11)//scaffold_6:24356769-24357221(+) (11)	NA	NA	NA	AT5G11470.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g42460.1	"BAH domain containing protein, expressed"	Medtr3g132700.1	Bromo adjacent region 	NA	GO:0003677|DNA binding	NA
PtpAffx.149830.1.S1_at	A	A1TS	POPTR_0009s01620	POPTR_0009s01620 (11)	scaffold_9:2155105-2157337(+) (11)	NA	NA	NA	AT2G28310.3	Protein of unknown function (DUF707) 	LOC_Os05g01760.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149856.1.S1_s_at	A	A1TS	POPTR_0015s07550	POPTR_0015s07550 (11)	scaffold_15:8835144-8836526(+) (11)	NA	Q40255	Probable aldehyde dehydrogenase	AT5G62530.1	aldehyde dehydrogenase 12A1 	LOC_Os05g45960.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g112760.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149869.1.S1_at	A	A1TS	POPTR_0003s09590	POPTR_0003s09590 (11)	scaffold_3:10887420-10888532(-) (11)	NA	Q38908	Probable xyloglucan endotransglucosylase/hydrolase protein 30	AT1G32170.1	xyloglucan endotransglucosylase/hydrolase 30 	LOC_Os02g03550.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr5g029020.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.149870.1.S1_s_at	A	A1TS	POPTR_0012s11900	POPTR_0012s11900 (11)	scaffold_12:12255002-12255069(-) (11)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.149893.1.S1_s_at	A	A1TS	POPTR_0011s14640	POPTR_0011s14640 (11)	scaffold_11:16977381-16977787(-) (11)	NA	NA	NA	AT5G45030.2	Trypsin family protein 	LOC_Os04g52479.3	"peptidase, trypsin-like serine and cysteine proteases, putative, expressed"	Medtr4g114550.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1499.1.S1_at	A	A1TS	POPTR_0004s21260	POPTR_0004s21260 (11)	scaffold_4:20462474-20462859(-) (11)	NA	Q9ZQG8	"Ferredoxin-3, chloroplastic"	AT2G27510.1	ferredoxin 3 	LOC_Os03g61960.2	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr2g107770.1	"Ferredoxin [2Fe-2S], plant "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.149909.1.S1_at	A	A1TS	POPTR_0014s04320	POPTR_0014s04320 (11)	scaffold_14:3372921-3374136(-) (11)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.149909.1.S1_s_at	A	A2TS	POPTR_0002s13630	POPTR_0002s13630 (11)//POPTR_0014s04320 (11)	scaffold_14:3371373-3374531(-) (11)//scaffold_2:10101460-10104739(-) (11)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.149919.1.S1_at	A	A1TS	POPTR_0001s17290	POPTR_0001s17290 (11)	scaffold_1:14118101-14120414(-) (11)	NA	Q4VA72	Lys-63-specific deubiquitinase BRCC36	AT1G80210.1	Mov34/MPN/PAD-1 family protein 	LOC_Os05g46490.2	"mov34 family protein, putative, expressed"	Medtr2g125820.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149927.1.S1_at	A	A1TS	POPTR_0014s12870	POPTR_0014s12870 (11)	scaffold_14:9482093-9482637(+) (11)	NA	Q9LYC6	Glutaredoxin-C11	AT3G62950.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g129930.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.149928.1.S1_at	A	A1TS	POPTR_0003s12690	POPTR_0003s12690 (11)	scaffold_3:13203483-13203618(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g149480.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.149929.1.S1_at	A	A1MS	POPTR_0010s16560	POPTR_0010s16560 (10)	scaffold_10:15489076-15489229(-) (10)	NA	NA	NA	AT2G03630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os07g20270.1	expressed protein	Medtr5g048120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149929.1.S1_s_at	A	A1TS	POPTR_0010s16560	POPTR_0010s16560 (11)	scaffold_10:15489219-15489569(-) (11)	NA	NA	NA	AT2G03630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os07g20270.1	expressed protein	Medtr5g048120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14998.3.S1_s_at	A	A1TS	POPTR_0004s18050	POPTR_0004s18050 (11)	scaffold_4:18052666-18053344(-) (11)	NA	Q5M7N9	Extended synaptotagmin-3	AT2G20990.1	synaptotagmin A 	LOC_Os02g25060.1	"NTMC2Type1.2 protein, putative, expressed"	Medtr4g098660.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149983.1.S1_at	A	A1TS	POPTR_0006s11490	POPTR_0006s11490 (11)	scaffold_6:8694806-8695768(-) (11)	NA	Q8Y7C5	Bifunctional protein folD	AT2G38660.3	Amino acid dehydrogenase family protein 	LOC_Os09g15810.1	"bifunctional protein folD, putative, expressed"	Medtr1g037310.1	Tetrahydrofolate dehydrogenase/cyclohydrolase 	GO:0044281|small molecule metabolic process||GO:0009396|folic acid and derivative biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.149986.1.S1_at	A	A1MS	POPTR_0003s17910	POPTR_0003s17910 (11)	scaffold_3:17156442-17156880(-) (11)	NA	Q9SAI5	60S ribosomal protein L7-1	AT1G80750.1	Ribosomal protein L30/L7 family protein 	LOC_Os08g42920.1	"60S ribosomal protein L7, putative, expressed"	Medtr7g065310.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.149990.1.S1_s_at	A	A1TS	POPTR_0012s05930	POPTR_0012s05930 (11)	scaffold_12:5831157-5832045(-) (11)	NA	Q7M3S9	RING finger protein B	AT1G18610.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150004.1.S1_s_at	A	A1TS	POPTR_0019s10900	POPTR_0019s10900 (11)	scaffold_19:12381199-12381613(+) (11)	NA	Q9C8P8	Transcription factor bHLH80	AT1G35460.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g147140.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15002.2.S1_at	A	A2TS	POPTR_0001s01770	POPTR_0001s01770 (11)//POPTR_0003s09690 (10)	scaffold_1:1290007-1290396(-) (11)//scaffold_3:10964739-10965124(+) (10)	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr5g028110.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.150025.1.S1_s_at	A	A1TS	POPTR_0013s15380	POPTR_0013s15380 (11)	scaffold_13:15381482-15381530(-) (11)	NA	Q43054	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.150046.1.S1_at	A	A1TS	POPTR_0005s07930	POPTR_0005s07930 (11)	scaffold_5:5475234-5476886(+) (11)	NA	O65201	"Acyl-coenzyme A oxidase 2, peroxisomal"	AT5G65110.1	acyl-CoA oxidase 2 	LOC_Os11g39220.1	"acyl-coenzyme A oxidase, putative, expressed"	Medtr4g109110.1	"Carbohydrate kinase, PfkB; Acyl-CoA dehydrogenase C-terminal-like; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.15005.1.S1_at	A	A1TS	POPTR_0003s09020	POPTR_0003s09020 (11)	scaffold_3:10346976-10347413(-) (11)	NA	NA	NA	AT2G35290.1	unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g07400.1	expressed protein	Medtr5g014550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150052.1.S1_s_at	A	A1TS	POPTR_0015s11475	POPTR_0015s11475 (11)	scaffold_15:12060338-12060538(+) (11)	NA	B9IFI5	UPF0497 membrane protein 1	AT4G25040.1	Uncharacterised protein family (UPF0497) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150066.1.S1_s_at	A	A2TS	POPTR_0015s01860	POPTR_0015s01860 (9)//POPTR_0492s00210 (9)	scaffold_15:1250965-1261850(-) (11)//scaffold_15:1302609-1311961(-) (10)//scaffold_492:9120-10071(-) (11)	NA	NA	NA	AT5G53450.2	OBP3-responsive gene 1 	LOC_Os01g46720.1	expressed protein	Medtr3g124180.2	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150069.1.S1_at	A	A1MS	POPTR_0013s00570	POPTR_0013s00570 (11)	scaffold_13:271465-271818(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150070.1.S1_at	A	A1TS	POPTR_0012s05520	POPTR_0012s05520 (10)	scaffold_12:5173233-5173597(-) (10)	NA	Q41651	"Peptidyl-prolyl cis-trans isomerase, chloroplastic"	AT1G74070.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g02080.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g116500.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.150078.1.S1_at	A	A1MS	POPTR_0005s01370	POPTR_0005s01370 (10)	scaffold_5:914778-915619(-) (11)	NA	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.150078.1.S1_s_at	A	A2TS	POPTR_0005s01370	POPTR_0013s00760 (11)//POPTR_0005s01370 (11)	scaffold_13:392146-392662(-) (11)//scaffold_5:914954-915431(-) (11)	NA	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.15008.1.S1_at	A	A1TS	POPTR_0018s13890	POPTR_0018s13890 (11)	scaffold_18:14185234-14185605(+) (11)	NA	Q9LU68	Protein CHLOROPLAST IMPORT APPARATUS 2	AT5G57180.2	chloroplast import apparatus 2 	LOC_Os02g05470.1	"CCT motif family protein, expressed"	Medtr8g129690.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1501.2.S1_at	A	A2TS	POPTR_0014s02160	POPTR_0014s02160 (10)//POPTR_0014s02180 (9)	scaffold_14:1856615-1857111(+) (10)//scaffold_14:1869471-1869945(+) (9)	NA	P93147	Isoflavone 2'-hydroxylase	AT5G10600.1	"cytochrome P450, family 81, subfamily K, polypeptide 2 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.150102.1.S1_at	A	A1MS	POPTR_0001s29650	POPTR_0001s29650 (10)	scaffold_1:28302311-28302815(+) (10)	NA	Q43117	"Pyruvate kinase isozyme A, chloroplastic"	AT3G22960.1	Pyruvate kinase family protein 	LOC_Os03g46910.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.150105.1.S1_at	A	A1TS	POPTR_0002s10960	POPTR_0002s10960 (11)	scaffold_2:7995658-7995985(-) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150129.1.S1_at	A	A1TS	POPTR_0003s06770	POPTR_0003s06770 (11)	scaffold_3:8297600-8304294(+) (11)	NA	P05050	Alpha-ketoglutarate-dependent dioxygenase AlkB	AT3G14160.1	2-oxoglutarate-dependent dioxygenase family protein 	LOC_Os03g60190.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr4g031500.1	"Alpha-ketoglutarate-dependent dioxygenase alkB, related "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.150129.1.S1_s_at	A	A2TS	POPTR_0003s06760	POPTR_0003s06770 (11)//POPTR_0003s06760 (11)	scaffold_3:8297617-8298552(+) (11)//scaffold_3:8298288-8304570(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150132.1.S1_at	A	A1MS	POPTR_0003s11000	POPTR_0003s11000 (10)	scaffold_3:11845578-11846792(-) (10)	NA	Q9DBN9	Probable ATP-dependent RNA helicase DDX59	AT3G02065.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g10770.2	"DEAD-box ATP-dependent RNA helicase 41, putative, expressed"	Medtr8g105900.1	"Zinc finger, CCHC-type; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150150.1.S1_s_at	A	A1TS	POPTR_0006s26530	POPTR_0006s26530 (11)	scaffold_6:24726088-24726592(+) (11)	NA	O48780	3-ketoacyl-CoA synthase 11	AT2G26640.1	3-ketoacyl-CoA synthase 11 	LOC_Os05g49900.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr8g119040.1	"Ribosomal protein S10; Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.15017.2.A1_a_at	A	A1TS	POPTR_0007s01670	POPTR_0007s01670 (11)	scaffold_7:964162-964376(+) (11)	NA	Q9LTR2	"Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic"	AT3G20320.1	trigalactosyldiacylglycerol2 	LOC_Os01g74280.1	"TGD2, putative, expressed"	Medtr5g095460.1	Mammalian cell entry related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150184.1.S1_s_at	A	A1TS	POPTR_0002s20780	POPTR_0002s20780 (11)	scaffold_2:16879602-16880395(-) (11)	NA	NA	NA	AT1G02910.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g25600.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g130350.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150191.1.S1_at	A	A1TS	POPTR_0001s30490	POPTR_0001s30490 (11)	scaffold_1:28978857-28979989(+) (11)	NA	Q92466	DNA damage-binding protein 2	AT4G34280.1	transducin family protein / WD-40 repeat family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150195.1.S1_at	A	A1TS	POPTR_0013s04420	POPTR_0013s04420 (11)	scaffold_13:3029656-3031061(-) (11)	NA	A3KPW7	Protein prenyltransferase alpha subunit repeat-containing protein 1	AT1G10095.1	Protein prenylyltransferase superfamily protein 	LOC_Os01g49060.1	"prenyltransferase, putative, expressed"	NA	NA	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity	NA
PtpAffx.150195.1.S1_s_at	A	A1TS	POPTR_0013s04420	POPTR_0013s04420 (11)	scaffold_13:3028983-3029651(-) (11)	NA	A3KPW7	Protein prenyltransferase alpha subunit repeat-containing protein 1	AT1G10095.1	Protein prenylyltransferase superfamily protein 	LOC_Os01g49060.1	"prenyltransferase, putative, expressed"	NA	NA	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity	NA
PtpAffx.150197.1.S1_at	A	A1TS	POPTR_0008s08240	POPTR_0008s08240 (10)	scaffold_8:5126563-5128588(-) (10)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT1G79480.2	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os09g38784.1	"retrotransposon protein, putative, unclassified"	Medtr1g147220.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150204.1.S1_at	A	A1TS	POPTR_0001s09380	POPTR_0001s09380 (11)	scaffold_1:7158946-7159211(+) (11)	NA	NA	NA	AT4G11560.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g34330.1	"BAH domain containing protein, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding	NA
PtpAffx.150219.1.S1_at	A	A1MS	POPTR_0010s22210	POPTR_0010s22210 (11)	scaffold_10:19193134-19193492(+) (11)	NA	Q6ZT07	TBC1 domain family member 9	AT3G55020.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g61860.1	"TBC domain containing protein, expressed"	Medtr1g146610.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.150221.1.S1_at	A	A1TS	POPTR_0015s01450	POPTR_0015s01450 (11)	scaffold_15:886498-887921(+) (11)	NA	Q8LDQ4	PP2A regulatory subunit TAP46	AT5G53000.1	2A phosphatase associated protein of 46 kD 	LOC_Os12g04290.1	"PP2A regulatory subunit TAP46, putative, expressed"	Medtr3g123750.1	TAP42-like protein 	GO:0009607|response to biotic stimulus||GO:0009966|regulation of signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling||GO:0023051|regulation of signaling process	NA	NA
PtpAffx.150232.1.S1_at	A	A1TS	POPTR_0012s13580	POPTR_0012s13580 (11)	scaffold_12:13682530-13682979(-) (11)	NA	Q9FXW4	Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.150235.1.S1_at	A	A1TS	POPTR_0013s13750	POPTR_0013s13750 (10)	scaffold_13:14158880-14159598(+) (10)//scaffold_13:14161493-14162211(+) (10)	POPTR_0013s13760 (7)	NA	NA	AT1G03650.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os10g35680.1	"acetyltransferase, GNAT family, putative, expressed"	AC229695_11.1	GCN5-related N-acetyltransferase AC229695.5 48321-47217 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.150240.1.S1_at	A	A1TS	POPTR_0017s02000	POPTR_0017s02000 (9)	scaffold_17:1458595-1458953(+) (10)	NA	Q9FFI2	Autophagy protein 5	AT5G17290.1	autophagy protein Apg5 family 	LOC_Os02g02570.1	"autophagy protein 5, putative, expressed"	Medtr5g084820.1	Autophagy protein Apg5 	GO:0006914|autophagy	NA	GO:0005737|cytoplasm
PtpAffx.150244.1.S1_at	A	A1TS	POPTR_0006s05970	POPTR_0006s05970 (11)	scaffold_6:4221157-4221514(+) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	NA	NA	Medtr8g122360.1	"CTV.15, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150249.1.S1_s_at	A	A1TS	POPTR_0001s33470	POPTR_0001s33470 (11)	scaffold_1:31675818-31676278(-) (11)	NA	Q9LSD5	Transcription factor TCP20	AT3G27010.1	"TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 "	LOC_Os01g69980.1	"TCP family transcription factor, putative, expressed"	Medtr7g018180.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150303.1.S1_at	A	A1TS	POPTR_0018s08770	POPTR_0018s08770 (11)	scaffold_18:9693453-9693489(-) (11)	NA	O22025	Protein cfxQ homolog	AT3G24530.1	AAA-type ATPase family protein / ankyrin repeat family protein 	LOC_Os02g16660.1	"cbxX, chromosomal, putative, expressed"	Medtr5g026960.1	Ankyrin 	NA	GO:0005524|ATP binding	NA
PtpAffx.150303.2.S1_s_at	A	A2TS	POPTR_0006s16110	POPTR_0006s16110 (11)//POPTR_0130s00210 (10)	scaffold_130:23444-24014(-) (10)//scaffold_6:13988966-13989568(+) (11)	NA	O22025	Protein cfxQ homolog	AT3G24530.1	AAA-type ATPase family protein / ankyrin repeat family protein 	LOC_Os02g16660.1	"cbxX, chromosomal, putative, expressed"	Medtr5g026960.1	Ankyrin 	NA	GO:0005524|ATP binding	NA
PtpAffx.150314.1.S1_at	A	A1TS	POPTR_0014s12680	POPTR_0014s12680 (11)	scaffold_14:9324008-9324411(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150333.1.S1_s_at	A	A1TS	POPTR_0019s04750	POPTR_0019s04750 (11)	scaffold_19:4955672-4956297(+) (11)	NA	O64654	"Thioredoxin-like 1-1, chloroplastic"	AT1G08570.1	atypical CYS  HIS rich thioredoxin 4 	LOC_Os03g21000.1	"thioredoxin, putative, expressed"	Medtr7g100190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.150352.1.S1_s_at	A	A1TS	POPTR_0009s15770	POPTR_0009s15770 (11)	scaffold_9:12121228-12121743(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G06570.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g06880.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.150364.1.S1_at	A	A1TS	POPTR_0005s27110	POPTR_0005s27110 (11)	scaffold_5:24908433-24909008(-) (11)	NA	NA	NA	AT1G42430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). 	LOC_Os03g04100.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150384.1.S1_s_at	A	A1TS	POPTR_0006s27840	POPTR_0006s27840 (11)	scaffold_6:25696084-25696334(-) (11)	NA	Q9SKZ2	Probable CCR4-associated factor 1 homolog 7	AT2G32070.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.150396.1.S1_at	A	A1TS	POPTR_0006s24600	POPTR_0006s24600 (9)	scaffold_6:23199499-23202783(+) (10)	NA	Q9H0R3	Transmembrane protein 222	AT2G26070.1	Protein of unknown function (DUF778) 	LOC_Os01g51430.1	"green ripe-like, putative, expressed"	Medtr1g020540.1	Protein of unknown function DUF778 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150404.1.S1_s_at	A	A1TS	POPTR_0009s01060	POPTR_0009s01060 (11)	scaffold_9:1196582-1197254(+) (11)	NA	Q8ND04	Protein SMG8	NA	NA	LOC_Os02g57780.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150427.1.S1_at	A	A1TS	POPTR_0005s21660	POPTR_0005s21660 (11)	scaffold_5:20764581-20766868(+) (11)	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.2	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.150430.1.S1_at	A	A1TS	POPTR_0001s38290	POPTR_0001s38290 (9)	scaffold_1:37387827-37388094(+) (9)	NA	NA	NA	NA	NA	LOC_Os10g35920.1	"OsFBX389 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150447.1.S1_s_at	A	A1TS	POPTR_0006s08020	POPTR_0006s08020 (11)	scaffold_6:5854372-5855129(-) (11)	NA	O64629	Serine/threonine-protein kinase Aurora-3	AT2G45490.1	ataurora3 	LOC_Os03g55620.3	"CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g043740.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.150458.1.S1_at	A	A1TS	POPTR_0019s04210	POPTR_0019s04210 (10)	scaffold_19:4304181-4304652(+) (10)	POPTR_0013s04800 (8)	Q5S2C3	Protein PIR	AT5G18410.2	transcription activators 	LOC_Os03g05020.1	"PIR, putative, expressed"	Medtr7g143220.1	Cytoplasmic fragile X mental retardation protein interacting protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15046.1.S1_a_at	A	A2TS	POPTR_0004s05710	POPTR_0011s07210 (11)//POPTR_0004s05710 (11)	scaffold_11:7970408-7971156(-) (11)//scaffold_4:4477307-4478153(+) (11)	NA	NA	NA	AT1G73177.1	bonsai 	NA	NA	Medtr7g134480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15046.2.A1_at	A	A1TS	POPTR_0011s07210	POPTR_0011s07210 (11)	scaffold_11:7970204-7971534(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g134480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150471.1.S1_s_at	A	A1TS	POPTR_0014s18430	POPTR_0014s18430 (11)	scaffold_14:15597862-15599929(-) (11)	NA	O82662	"Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial"	AT2G20420.1	ATP citrate lyase (ACL) family protein 	LOC_Os02g40830.1	"succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.150473.1.S1_s_at	A	A1TS	POPTR_0001s40830	POPTR_0001s40830 (11)	scaffold_1:40437444-40438907(+) (11)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT5G53900.2	Serine/threonine-protein kinase WNK (With No Lysine)-related 	LOC_Os11g25920.1	"transcription factor-related, putative, expressed"	Medtr1g023870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150479.1.S1_at	A	A1TS	POPTR_0013s13390	POPTR_0013s13390 (10)	scaffold_13:13875894-13876304(+) (10)	NA	NA	NA	AT4G03600.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g19860.1	expressed protein	Medtr4g107970.1	"ATP binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150480.1.S1_s_at	A	A1TS	POPTR_0015s05440	POPTR_0015s05440 (11)	scaffold_15:5792260-5792786(+) (11)	NA	NA	NA	AT1G53345.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in 75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37 (source: NCBI BLink). "	LOC_Os02g45950.1	expressed protein	Medtr4g121710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150481.1.S1_at	A	A1MS	POPTR_0014s18620	POPTR_0014s18620 (10)	scaffold_14:15954422-15955897(+) (11)	NA	A2AH22	Activating molecule in BECN1-regulated autophagy protein 1	AT1G04140.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g18820.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g117620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150481.2.A1_at	A	A1TS	POPTR_0002s25600	POPTR_0002s25600 (10)	scaffold_2:22693094-22694351(+) (10)	NA	Q9C0C7	Activating molecule in BECN1-regulated autophagy protein 1	AT1G04140.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g18820.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g117620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1505.1.S1_at	A	A1TS	POPTR_0014s02450	POPTR_0014s02450 (11)	scaffold_14:2052171-2052568(+) (11)	NA	NA	NA	AT5G47830.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g06390.1	expressed protein	Medtr1g023970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150530.1.S1_at	A	A1TS	POPTR_0002s16210	POPTR_0002s16210 (11)	scaffold_2:12113315-12113678(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.1	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150535.1.S1_at	A	A1TS	POPTR_0009s05800	POPTR_0009s05800 (11)	scaffold_9:5801383-5802273(-) (11)	NA	Q05AL1	Armadillo repeat-containing protein 8	AT1G51350.1	ARM repeat superfamily protein 	LOC_Os11g41990.1	"armadillo/beta-catenin-like repeat family protein, expressed"	Medtr5g104530.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150547.1.S1_at	A	A1TS	POPTR_0004s09700	POPTR_0004s09700 (9)	scaffold_4:8219711-8220679(-) (9)	NA	Q56ZZ7	Plastidic glucose transporter 4	AT5G16150.3	plastidic GLC translocator 	LOC_Os01g04190.2	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.150556.1.S1_at	A	A1TS	POPTR_0018s13050	POPTR_0018s13050 (10)	scaffold_18:13511644-13512518(+) (10)	NA	Q9LDI3	CBL-interacting serine/threonine-protein kinase 24	AT5G35410.1	Protein kinase superfamily protein 	LOC_Os06g40370.1	"CAMK_KIN1/SNF1/Nim1_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g120590.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.150562.1.S1_at	A	A1TS	POPTR_0008s10180	POPTR_0008s10180 (11)	scaffold_8:6381497-6383162(+) (11)	NA	Q1ZXH4	Transmembrane protein 93 homolog	AT5G49540.1	Rab5-interacting family protein 	LOC_Os01g49026.1	"transmembrane protein 93, putative, expressed"	Medtr2g037740.1	Protein of unknown function DUF786 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150574.1.S1_at	A	A1TS	POPTR_0010s02530	POPTR_0010s02530 (10)	scaffold_10:2965867-2966240(+) (10)	NA	NA	NA	AT5G24860.1	flowering promoting factor 1 	LOC_Os02g26210.1	"flowering promoting factor-like 1, putative, expressed"	Medtr8g138840.1	"flowering promoting factor-like 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150579.1.S1_s_at	A	A1TS	POPTR_0002s24220	POPTR_0002s24220 (11)	scaffold_2:21633155-21634549(-) (11)	NA	Q54KS4	Guanine nucleotide-binding protein-like 3 homolog	AT3G07050.1	GTP-binding family protein 	LOC_Os01g27730.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.150588.1.S1_at	A	A1TS	POPTR_0011s14710	POPTR_0011s14710 (11)	scaffold_11:17017274-17017521(+) (11)	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150589.1.S1_at	A	A1TS	POPTR_0007s14120	POPTR_0007s14120 (10)	scaffold_7:14011182-14011868(+) (10)	NA	Q66JG8	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.150614.1.S1_at	A	A1TS	POPTR_0001s06900	POPTR_0001s06900 (10)	scaffold_1:5266498-5268571(+) (10)	NA	Q96FV9	THO complex subunit 1	AT5G09860.1	nuclear matrix protein-related 	LOC_Os03g01970.1	"THO complex subunit 1, putative, expressed"	Medtr3g005340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15062.1.S1_at	A	A1MS	POPTR_0001s18040	POPTR_0001s18040 (9)	scaffold_1:15021784-15021966(-) (9)	NA	Q94738	97 kDa heat shock protein	AT1G79920.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os01g08560.2	"DnaK family protein, putative, expressed"	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150645.1.S1_at	A	A1TS	POPTR_0005s12080	POPTR_0005s12080 (11)	scaffold_5:8870175-8872173(+) (11)	NA	NA	NA	AT1G75420.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g15780.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
PtpAffx.150651.1.S1_at	A	A1TS	POPTR_0014s15940	POPTR_0014s15940 (11)	scaffold_14:12012388-12013766(+) (11)	NA	O74462	Transcription initiation factor TFIID subunit 6	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59 	LOC_Os01g32750.1	"TATA binding protein-associated factor, putative, expressed"	Medtr7g026010.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0051090|regulation of transcription factor activity||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity||GO:0016986|transcription initiation factor activity	GO:0005634|nucleus
PtpAffx.150652.1.S1_at	A	A1TS	POPTR_0007s10870	POPTR_0007s10870 (11)	scaffold_7:11055305-11056372(+) (11)	NA	Q55G10	Nicotinate phosphoribosyltransferase	AT2G23420.1	nicotinate phosphoribosyltransferase 2 	LOC_Os03g62110.2	"nicotinate phosphoribosyltransferase family domain containing protein, expressed"	Medtr5g016960.1	Nicotinate phosphoribosyltransferase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15066.1.S1_at	A	A1TS	POPTR_0005s18180	POPTR_0005s18180 (9)	scaffold_5:16287083-16287117(-) (9)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT4G36960.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g71770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g017210.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.15066.1.S1_s_at	A	A1TS	POPTR_0005s18180	POPTR_0005s18180 (11)	scaffold_5:16287236-16287620(-) (11)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT4G36960.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g71770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g017210.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.150696.1.S1_at	A	A1TS	POPTR_0018s02560	POPTR_0018s02560 (11)	scaffold_18:2329749-2329943(-) (11)	NA	Q54QK7	Probable dimethyladenosine transferase	AT5G66360.2	Ribosomal RNA adenine dimethylase family protein 	LOC_Os07g32550.1	"dimethyladenosine transferase, putative, expressed"	Medtr5g021120.1	Ribosomal RNA adenine methylase transferase 	GO:0044260|cellular macromolecule metabolic process||GO:0000154|rRNA modification	"GO:0000179|""rRNA (adenine-N6,N6-)-dimethyltransferase activity"""	NA
PtpAffx.1507.1.S1_s_at	A	A1TS	POPTR_0014s04690	POPTR_0014s04690 (9)	scaffold_14:3599937-3601092(+) (11)	NA	NA	NA	AT1G02120.1	GRAM domain family protein 	LOC_Os07g30940.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150730.1.S1_at	A	A1MS	POPTR_0016s10900	POPTR_0016s10900 (9)	scaffold_16:9273518-9274542(+) (11)	POPTR_0006s12180 (6)	NA	NA	AT2G36720.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g01170.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150734.1.A1_a_at	A	A1TA	POPTR_0014s08230	POPTR_0014s08230 (11)	scaffold_14:6116784-6116823(-) (11)//scaffold_14:6116829-6116868(-) (11)//scaffold_14:6116874-6116913(-) (11)	NA	Q6EVK6	ATP-dependent helicase BRM	AT2G46020.2	"transcription regulatory protein SNF2, putative "	LOC_Os02g02290.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g087810.1	"SNF2-related; Bromodomain; Helicase, C-terminal; ; "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0005634|nucleus
PtpAffx.150734.1.A1_at	A	A1TA	POPTR_0014s08230	POPTR_0014s08230 (10)	scaffold_14:6116800-6117107(-) (11)	NA	Q6EVK6	ATP-dependent helicase BRM	AT2G46020.2	"transcription regulatory protein SNF2, putative "	LOC_Os02g02290.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g087810.1	"SNF2-related; Bromodomain; Helicase, C-terminal; ; "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0005634|nucleus
PtpAffx.150742.1.S1_s_at	A	A1TS	POPTR_0018s07590	POPTR_0018s07590 (11)	scaffold_18:8035913-8036584(-) (11)	NA	Q5R7W3	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	AT4G33060.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g40050.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.150763.1.S1_at	A	A1TS	POPTR_0001s02730	POPTR_0001s02730 (11)	scaffold_1:2155071-2156206(+) (11)	POPTR_0003s08810 (6)	Q9LQK7	"Protein ABCI7, chloroplastic"	AT1G32500.1	non-intrinsic ABC protein 6 	LOC_Os01g03650.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr5g014460.1	FeS assembly protein SufD 	GO:0016226|iron-sulfur cluster assembly	GO:0005515|protein binding	NA
PtpAffx.150782.1.S1_at	A	A1MA	POPTR_0010s02240	POPTR_0010s02240 (9)	scaffold_10:2591326-2591817(-) (9)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G18590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os12g35350.2	"kelch repeat protein, putative, expressed"	Medtr8g139440.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150783.1.S1_at	A	A1TS	POPTR_0006s17890	POPTR_0006s17890 (11)	scaffold_6:16129424-16131726(+) (11)	NA	O65570	Villin-4	AT4G30160.1	villin 4 	LOC_Os06g44890.1	"villin protein, putative, expressed"	Medtr2g041680.1	Villin headpiece; Gelsolin region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150789.1.S1_s_at	A	A2TS	POPTR_0006s20090	POPTR_0006s20090 (11)//POPTR_0018s11820 (11)	scaffold_18:12487899-12488262(-) (11)//scaffold_6:19167489-19168231(-) (11)	NA	P93338	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	AT2G24270.3	aldehyde dehydrogenase 11A3 	LOC_Os08g34210.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g145740.1	"NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.150798.1.S1_at	A	A2TS	POPTR_0002s04100	POPTR_0002s04100 (11)//POPTR_0005s24420 (10)	scaffold_2:2561598-2563172(-) (11)//scaffold_5:22972373-22973350(+) (10)	NA	Q54NA3	Autophagy-related protein 9	AT2G31260.1	autophagy 9 (APG9) 	LOC_Os10g07994.1	"autophagy protein 9, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1508.1.S1_at	A	A1TS	POPTR_0011s15470	POPTR_0011s15470 (11)	scaffold_11:17557892-17558331(+) (11)	NA	Q8R1R3	"StAR-related lipid transfer protein 7, mitochondrial"	AT1G64720.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g02910.1	"membrane related protein CP5, putative, expressed"	Medtr3g122780.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150810.1.S1_s_at	A	A1TS	POPTR_0018s03050	POPTR_0018s03050 (11)	scaffold_18:2726070-2726460(-) (11)	NA	NA	NA	AT5G10750.1	Protein of unknown function (DUF1336) 	LOC_Os06g48320.1	"EDR2, putative, expressed"	Medtr3g138580.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150823.1.S1_at	A	A1TS	POPTR_0006s12810	POPTR_0006s12810 (11)	scaffold_6:9976160-9977792(+) (11)	NA	P79769	Translin	AT2G37020.1	Translin family protein 	LOC_Os10g30640.1	"translin, putative, expressed"	NA	NA	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.150867.1.S1_at	A	A1TS	POPTR_0007s10740	POPTR_0007s10740 (11)	scaffold_7:10786048-10787911(+) (11)	NA	Q9W6I1	RNA-binding protein with multiple splicing	AT2G42240.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g47300.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g016600.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.150868.1.S1_s_at	A	A2TS	POPTR_0008s02610	POPTR_0010s24060 (11)//POPTR_0008s02610 (11)	scaffold_10:20462168-20462214(+) (11)//scaffold_8:1303320-1303366(-) (11)	NA	Q8LK56	Transcriptional activator DEMETER	AT5G04560.1	HhH-GPD base excision DNA repair family protein 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	NA
PtpAffx.15088.1.S1_at	A	A1TS	POPTR_0009s07510	POPTR_0009s07510 (9)	scaffold_9:6989421-6989884(-) (9)	NA	NA	NA	AT5G12330.4	Lateral root primordium (LRP) protein-related 	LOC_Os01g72490.2	"LRP1, putative, expressed"	Medtr5g096790.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150890.1.S1_at	A	A1TS	POPTR_0006s19730	POPTR_0006s19730 (9)	scaffold_6:18762322-18764696(-) (10)	NA	Q8GXU8	"1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic"	AT4G30580.1	Phospholipid/glycerol acyltransferase family protein 	LOC_Os10g35390.1	"acyltransferase, putative, expressed"	Medtr5g046470.1	1-acyl-sn-glycerol-3-phosphate acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.150892.1.S1_at	A	A1TS	POPTR_0014s07120	POPTR_0014s07120 (11)	scaffold_14:5366491-5367476(-) (11)	NA	Q96287	Shaggy-related protein kinase theta	AT4G00720.1	shaggy-like protein kinase 32 	LOC_Os10g37740.1	"CGMC_GSK.9 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g083630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.150913.1.S1_at	A	A2TS	POPTR_0001s04110	POPTR_0001s04110 (9)//POPTR_0003s20990 (9)	scaffold_1:3250700-3252335(+) (9)//scaffold_3:19329122-19330656(+) (9)	NA	Q92177	Calpain-3	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
PtpAffx.150914.1.S1_at	A	A1MS	POPTR_0005s10770	POPTR_0005s10770 (9)	scaffold_5:7733197-7733691(+) (9)	NA	Q9C5Y0	Phospholipase D delta	AT4G35790.2	phospholipase D delta 	LOC_Os09g37100.1	"phospholipase D, putative, expressed"	Medtr5g023030.1	C2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.150916.1.S1_at	A	A1TS	POPTR_0004s23850	POPTR_0004s23850 (11)	scaffold_4:22473443-22474013(+) (11)	NA	Q91W34	UPF0420 protein C16orf58 homolog	AT5G49820.1	"Protein of unknown function, DUF647 "	LOC_Os05g34650.1	"DUF647 domain containing protein, putative, expressed"	Medtr4g106950.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150928.1.S1_s_at	A	A1TS	POPTR_0018s13650	POPTR_0018s13650 (9)	scaffold_18:13913998-13914416(-) (9)//scaffold_4:10737490-10737531(+) (9)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.150929.1.S1_s_at	A	A1TS	POPTR_0003s16770	POPTR_0003s16770 (11)	scaffold_3:16295175-16297038(+) (11)	NA	Q84WJ2	Probable DNA primase large subunit	AT1G67320.2	"DNA primase, large subunit family "	LOC_Os07g22400.2	"POLA3 - Putative DNA polymerase alpha complex subunit, expressed"	Medtr4g147290.1	"Eukaryotic-type DNA primase, large subunit "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006269|""DNA replication, synthesis of RNA primer"""	GO:0003896|DNA primase activity	NA
PtpAffx.15093.1.S1_at	A	A1TS	POPTR_0003s08720	POPTR_0003s08720 (11)	scaffold_3:10128314-10129355(+) (11)	NA	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT5G46570.1	BR-signaling kinase 2 	LOC_Os10g42110.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.150939.1.S1_at	A	A1TS	POPTR_0002s19050	POPTR_0002s19050 (10)	scaffold_2:14950970-14951485(-) (10)	NA	Q9NUP7	tRNA guanosine-2'-O-methyltransferase TRM13 homolog	AT4G01880.1	methyltransferases 	LOC_Os03g61750.1	expressed protein	NA	NA	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.150944.1.S1_at	A	A1MS	POPTR_0004s14830	POPTR_0004s14830 (9)	scaffold_4:15493234-15493596(+) (9)	NA	Q9LJK3	LAG1 longevity assurance homolog 2	AT3G19260.1	LAG1 homologue 2 	LOC_Os03g15750.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.150951.1.S1_at	A	A1TS	POPTR_0010s07990	POPTR_0010s07990 (11)	scaffold_10:8976765-8977264(-) (11)	POPTR_0008s16910 (7)//POPTR_0008s18740 (7)	NA	NA	AT4G14310.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g56520.1	expressed protein	Medtr2g092990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150954.1.S1_s_at	A	A1TS	POPTR_0010s04820	POPTR_0010s04820 (11)	scaffold_10:5978915-5979327(-) (11)	POPTR_0008s19650 (6)	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.15096.1.S1_a_at	A	A1TS	POPTR_0006s28790	POPTR_0006s28790 (11)	scaffold_6:26385157-26385306(+) (11)	NA	NA	NA	AT5G24890.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g32330.1	expressed protein	Medtr1g010670.1	"KID-containing protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150960.2.S1_at	A	A1TS	POPTR_0015s14940	POPTR_0015s14940 (11)	scaffold_15:14339017-14339517(-) (11)	NA	NA	NA	AT5G44860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os01g58620.1	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150981.1.S1_at	A	A1TS	POPTR_0001s19500	POPTR_0001s19500 (11)	scaffold_1:17172199-17172711(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151.1.S1_at	A	A1TS	POPTR_0014s09360	POPTR_0014s09360 (11)	scaffold_14:6955368-6956027(-) (11)	NA	Q43766	Non-specific lipid-transfer protein 3	AT5G59310.1	lipid transfer protein 4 	NA	NA	Medtr4g036790.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151041.1.S1_s_at	A	A1TS	POPTR_0004s05510	POPTR_0004s05510 (11)	scaffold_4:4259480-4259877(-) (11)	POPTR_0004s05520 (8)//POPTR_0004s05540 (8)	P12412	Vignain	AT5G45890.1	senescence-associated gene 12 	LOC_Os04g13090.1	"vignain precursor, putative"	Medtr5g022460.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.151056.1.S1_at	A	A1TS	POPTR_0014s01710	POPTR_0014s01710 (11)	scaffold_14:1599102-1600037(+) (11)	NA	Q5S1U6	Interferon-related developmental regulator 1	AT1G27760.1	interferon-related developmental regulator family protein / IFRD protein family 	LOC_Os07g39900.1	"interferon-related developmental regulator, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151091.1.S1_s_at	A	A1TS	POPTR_0001s31650	POPTR_0001s31650 (11)	scaffold_1:30022834-30023042(-) (11)	NA	NA	NA	AT3G18800.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g59050.1	hypothetical protein	Medtr3g144210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151112.1.S1_s_at	A	A2TS	POPTR_0005s11640	POPTR_0005s11640 (11)//POPTR_0007s09550 (9)	scaffold_5:8436258-8436880(-) (11)//scaffold_7:9012906-9013506(+) (9)	NA	Q9Y4A5	Transformation/transcription domain-associated protein	AT2G17930.1	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain 	LOC_Os07g45070.1	"FAT domain-containing protein, putative, expressed"	Medtr5g021910.1	"PIK-related kinase, FATC "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.15112.1.S1_at	A	A1TS	POPTR_0015s05680	POPTR_0015s05680 (11)	scaffold_15:6020638-6021151(-) (11)	NA	Q9FLX5	ABC transporter G family member 8	AT5G52860.1	ABC-2 type transporter family protein 	LOC_Os06g30730.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr1g126360.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.151124.1.S1_s_at	A	A1TS	POPTR_0001s26640	POPTR_0001s26640 (11)	scaffold_1:25622997-25625740(+) (11)	NA	Q9SYC8	1-acyl-sn-glycerol-3-phosphate acyltransferase 3	AT1G51260.1	lysophosphatidyl acyltransferase 3 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.151134.1.S1_at	A	A1TS	POPTR_0004s05270	POPTR_0004s05270 (11)	scaffold_4:4002462-4003466(-) (11)	NA	P93162	"Magnesium-chelatase subunit chlI, chloroplastic"	AT5G45930.1	magnesium chelatase i2 	LOC_Os03g36540.1	"magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed"	Medtr2g018830.1	"Magnesium chelatase, ChlI subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151137.1.S1_at	A	A1TS	POPTR_0005s08490	POPTR_0005s08490 (11)	scaffold_5:5905050-5906123(-) (11)	NA	P73627	Uncharacterized protein sll1770	AT5G64940.2	ABC2 homolog 13 	LOC_Os02g36570.1	"ABC1 family domain containing protein, putative, expressed"	Medtr3g144970.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151137.1.S1_s_at	A	A1TS	POPTR_0005s08490	POPTR_0005s08490 (11)	scaffold_5:5902155-5904639(-) (11)	POPTR_0007s06450 (8)	P73627	Uncharacterized protein sll1770	AT5G64940.2	ABC2 homolog 13 	LOC_Os02g36570.1	"ABC1 family domain containing protein, putative, expressed"	Medtr3g144970.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151141.1.S1_at	A	A1TS	POPTR_0005s05070	POPTR_0005s05070 (9)	scaffold_5:3374163-3376023(+) (9)	NA	Q9FQ04	5'-3' exoribonuclease 4	AT1G54490.1	exoribonuclease 4 	LOC_Os03g58060.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr7g140440.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.151150.1.S1_at	A	A1TS	POPTR_0015s03710	POPTR_0015s03710 (11)	scaffold_15:3551013-3551814(-) (11)	NA	O95294	RasGAP-activating-like protein 1	AT3G18370.1	C2 domain-containing protein 	LOC_Os01g03820.1	"C2 domain containing protein, putative, expressed"	Medtr6g028380.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151152.1.S1_s_at	A	A1TS	POPTR_0008s22830	POPTR_0008s22830 (11)	scaffold_8:17613223-17613768(-) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G18590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os12g35350.2	"kelch repeat protein, putative, expressed"	Medtr8g139440.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151163.1.S1_at	A	A1TS	POPTR_0016s11410	POPTR_0016s11410 (11)	scaffold_16:10264193-10265478(+) (11)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.151173.1.S1_s_at	A	A1TS	POPTR_0017s06180	POPTR_0017s06180 (11)	scaffold_17:4792559-4792735(-) (11)	NA	P54967	Biotin synthase	AT2G43360.1	Radical SAM superfamily protein 	LOC_Os08g42730.1	"radical SAM enzyme, putative, expressed"	Medtr4g104400.1	Biotin and thiamin synthesis associated 	GO:0044283|small molecule biosynthetic process||GO:0009102|biotin biosynthetic process||GO:0044281|small molecule metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0004076|biotin synthase activity	NA
PtpAffx.151180.1.S1_at	A	A1TS	POPTR_0005s21790	POPTR_0005s21790 (9)	scaffold_5:20875088-20875417(-) (9)	NA	NA	NA	AT1G34000.1	one-helix protein 2 	LOC_Os01g40710.1	"high light inducible protein, putative, expressed"	Medtr1g124760.1	"one-helix protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151190.1.S1_s_at	A	A1TS	POPTR_0017s08600	POPTR_0017s08600 (11)	scaffold_17:7213437-7213818(-) (11)	NA	Q54Z26	Serine hydroxymethyltransferase 1	AT4G13930.1	serine hydroxymethyltransferase 4 	LOC_Os12g22030.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr4g133030.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.151201.1.S1_s_at	A	A2TS	POPTR_0004s15980	POPTR_0009s11660 (11)//POPTR_0004s15980 (11)	scaffold_4:16450893-16451460(-) (11)//scaffold_9:9648074-9648619(-) (11)	NA	Q9SXA1	Phosphatidylinositol 4-kinase alpha	AT1G49340.1	Phosphatidylinositol 3- and 4-kinase family protein 	LOC_Os03g50320.1	"phosphatidylinositol 4-kinase PI4K, putative, expressed"	Medtr3g159720.1	Ribosomal protein L2; Protein kinase-like; ; 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0004428|inositol or phosphatidylinositol kinase activity"	NA
PtpAffx.151209.1.S1_at	A	A1TS	POPTR_0016s07560	POPTR_0016s07560 (11)	scaffold_16:5441489-5442667(-) (11)	NA	NA	NA	AT5G06240.1	embryo defective 2735 	LOC_Os05g02190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151228.1.S1_s_at	A	A1TS	POPTR_0010s12880	POPTR_0010s12880 (11)	scaffold_10:12832493-12832730(-) (11)	NA	NA	NA	AT1G68185.1	Ubiquitin-like superfamily protein 	LOC_Os01g42250.1	expressed protein	AC235678_17.1	hypothetical protein AC235678.1 90359-87597 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151232.1.S1_at	A	A1TS	POPTR_0018s06800	POPTR_0018s06800 (10)	scaffold_18:6853982-6856316(+) (10)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT5G56590.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os01g53750.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g160090.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.151234.1.S1_at	A	A1TS	POPTR_0012s13050	POPTR_0012s13050 (9)	scaffold_12:13353280-13354363(-) (9)	NA	NA	NA	AT3G49050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.151241.1.S1_at	A	A1TS	POPTR_0007s12690	POPTR_0007s12690 (9)	scaffold_7:12930624-12930752(+) (9)	NA	Q42404	U1 small nuclear ribonucleoprotein 70 kDa	AT3G50670.1	U1 small nuclear ribonucleoprotein-70K 	LOC_Os10g02630.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g093540.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.151246.1.S1_at	A	A1TS	POPTR_0004s22900	POPTR_0004s22900 (11)	scaffold_4:21740307-21742836(-) (11)	NA	Q8W3M6	Ubiquitin-like domain-containing CTD phosphatase	AT4G06599.1	ubiquitin family protein 	LOC_Os01g65450.2	"ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed"	Medtr4g137220.1	Ubiquitin; NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151246.1.S1_s_at	A	A1TS	POPTR_0004s22900	POPTR_0004s22900 (11)	scaffold_4:21740373-21742775(-) (11)	NA	Q8W3M6	Ubiquitin-like domain-containing CTD phosphatase	AT4G06599.1	ubiquitin family protein 	LOC_Os01g65450.2	"ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed"	Medtr4g137220.1	Ubiquitin; NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15128.1.A1_at	A	A1TS	POPTR_0016s03130	POPTR_0016s03130 (11)	scaffold_16:1586657-1587188(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT1G68620.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33940.1	"alpha/beta hydrolase fold, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.151286.1.S1_s_at	A	A1TS	POPTR_0003s01120	POPTR_0003s01120 (11)	scaffold_14:1084865-1085369(+) (11)//scaffold_3:980274-980778(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151297.1.S1_s_at	A	A1TS	POPTR_0001s09910	POPTR_0001s09910 (11)	scaffold_1:7650275-7650979(-) (11)	NA	P22503	Endoglucanase	AT4G09740.1	glycosyl hydrolase 9B14 	LOC_Os08g29770.1	"endoglucanase, putative, expressed"	Medtr5g010040.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.151298.1.S1_at	A	A1TS	POPTR_0016s05740	POPTR_0016s05740 (11)	scaffold_16:3677888-3678445(-) (11)	NA	NA	NA	AT2G41640.1	Glycosyltransferase family 61 protein 	LOC_Os01g31370.1	"glycosyltransferase, putative, expressed"	Medtr7g108510.1	Protein of unknown function DUF563 	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.151308.1.S1_s_at	A	A2TS	POPTR_0018s13380	POPTR_0018s13380 (11)//POPTR_0018s13390 (11)	scaffold_18:13712365-13712829(+) (11)//scaffold_18:13721184-13721648(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.151309.1.S1_s_at	A	A1TS	POPTR_0019s07830	POPTR_0019s07830 (11)	scaffold_19:9056678-9056981(+) (11)	NA	Q9DBY1	E3 ubiquitin-protein ligase synoviolin	AT3G16090.1	RING/U-box superfamily protein 	LOC_Os06g19680.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g007790.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151314.1.S1_at	A	A1TS	POPTR_0016s07630	POPTR_0016s07630 (11)	scaffold_16:5479134-5479927(-) (11)	NA	Q9ZE28	Uncharacterized protein RP120	AT5G22350.1	Protein of unknown function (DUF1022) 	LOC_Os02g33230.1	"nucleoside-diphosphate-sugar epimerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151315.1.S1_at	A	A1TS	POPTR_0002s22860	POPTR_0002s22860 (11)	scaffold_2:19899484-19900600(+) (11)	NA	P93051	Sugar transporter ERD6-like 7	AT2G48020.1	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr8g139840.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.151322.1.S1_at	A	A1TS	POPTR_0006s14840	POPTR_0006s14840 (11)	scaffold_6:12268450-12268969(+) (11)	NA	Q7T3C6	Cleavage and polyadenylation specificity factor subunit 5	AT4G29820.1	homolog of CFIM-25 	LOC_Os08g30820.1	"cleavage and polyadenylation specificity factor subunit 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151334.1.S1_at	A	A1TS	POPTR_0012s01340	POPTR_0012s01340 (10)	scaffold_12:954686-955053(+) (10)	NA	Q4V8K4	Solute carrier family 25 member 39	AT4G27940.1	manganese tracking factor for mitochondrial SOD2 	LOC_Os08g29720.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g124670.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151337.1.S1_at	A	A1TS	POPTR_0007s04320	POPTR_0007s04320 (11)	scaffold_7:2635128-2638914(-) (11)	NA	NA	NA	AT5G20680.3	TRICHOME BIREFRINGENCE-LIKE 16 	LOC_Os11g13800.2	expressed protein	Medtr4g143010.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151338.1.S1_at	A	A1TS	POPTR_0011s17280	POPTR_0011s17280 (10)	scaffold_11:18862957-18865666(+) (10)	NA	Q5ZMQ9	Peroxisomal targeting signal 1 receptor	AT5G56290.1	peroxin 5 	LOC_Os08g39080.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g010600.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151340.1.S1_at	A	A1TS	POPTR_0006s28110	POPTR_0006s28110 (11)	scaffold_6:25922479-25923259(-) (11)	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.151342.1.S1_at	A	A1TS	POPTR_0019s07900	POPTR_0019s07900 (9)	scaffold_19:9204379-9206316(+) (9)	POPTR_0013s09680 (7)	Q6P5F9	Exportin-1	AT5G17020.1	exportin 1A 	LOC_Os03g64080.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr4g106960.1	"Importin-beta, N-terminal; "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.151346.1.S1_at	A	A1TS	POPTR_0001s35490	POPTR_0001s35490 (10)	scaffold_1:33828430-33829515(+) (10)	NA	Q6NQK2	NAC domain-containing protein 8	AT3G01600.1	NAC domain containing protein 44 	LOC_Os02g38130.1	"no apical meristem protein, putative, expressed"	Medtr5g069400.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.15135.1.A1_s_at	A	A1TS	POPTR_0008s13910	POPTR_0008s13910 (11)	scaffold_8:9183875-9184602(+) (11)	NA	Q9SIS3	65-kDa microtubule-associated protein 6	AT2G01910.2	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os09g27700.2	"microtubule associated protein, putative, expressed"	Medtr1g046560.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151356.1.S1_at	A	A1TS	POPTR_0001s24550	POPTR_0001s24550 (9)	scaffold_1:23803248-23803641(-) (9)	NA	Q9SNC6	U-box domain-containing protein 13	AT3G46510.1	plant U-box 13 	LOC_Os03g16824.1	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.151356.3.S1_a_at	A	A1TS	POPTR_0009s03500	POPTR_0009s03500 (11)	scaffold_9:4129822-4130525(-) (11)	POPTR_0001s24550 (6)	Q9SNC6	U-box domain-containing protein 13	AT3G46510.1	plant U-box 13 	LOC_Os03g16824.1	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.151360.1.S1_at	A	A1TS	POPTR_0017s14360	POPTR_0017s14360 (11)	scaffold_17:14450378-14450441(+) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT5G16000.1	NSP-interacting kinase 1 	LOC_Os06g16330.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.151364.1.S1_at	A	A1MS	POPTR_0008s18310	POPTR_0008s18310 (11)	scaffold_8:12253504-12254059(-) (11)	NA	Q9SAF1	Actin-related protein 3	AT1G13180.1	Actin-like ATPase superfamily protein 	LOC_Os02g38340.1	"actin, putative, expressed"	Medtr2g008170.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.151371.1.S1_at	A	A1TS	POPTR_0019s06270	POPTR_0019s06270 (9)	scaffold_19:6924703-6925853(+) (11)	NA	O22682	"Probable cysteine synthase, chloroplastic"	AT3G03630.1	cysteine synthase 26 	LOC_Os01g74650.1	"cysteine synthase, mitochondrial precursor, putative, expressed"	Medtr7g103940.1	Cysteine synthase A 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.151377.1.S1_a_at	A	A2TS	POPTR_0002s11140	POPTR_0005s19550 (11)//POPTR_0002s11140 (11)	scaffold_2:8177521-8178127(-) (11)//scaffold_5:18422820-18423417(-) (11)	NA	Q8GXL7	GATA transcription factor 24	AT3G21175.2	ZIM-like 1 	LOC_Os03g47970.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149720.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.151377.1.S1_at	A	A1TS	POPTR_0005s19550	POPTR_0005s19550 (9)	scaffold_5:18422455-18423799(-) (10)	NA	Q8H1G0	GATA transcription factor 28	AT3G21175.2	ZIM-like 1 	LOC_Os03g47970.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149720.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.151377.2.S1_a_at	A	A1TS	POPTR_0002s11140	POPTR_0002s11140 (11)	scaffold_2:8178122-8179134(-) (11)	NA	Q8GXL7	GATA transcription factor 24	AT3G21175.2	ZIM-like 1 	LOC_Os03g47970.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149720.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.151397.1.S1_s_at	A	A1TS	POPTR_0014s18540	POPTR_0014s18540 (11)	scaffold_14:15853893-15854336(+) (11)	NA	NA	NA	AT4G28760.2	Protein of unknown function (DUF3741) 	LOC_Os03g04990.1	expressed protein	Medtr7g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151401.1.S1_at	A	A1MS	POPTR_0017s13670	POPTR_0017s13670 (11)	scaffold_17:13767614-13767649(-) (11)	NA	Q9LFV5	F-box/kelch-repeat protein At5g15710	AT5G15710.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g57290.1	"OsFBX153 - F-box domain containing protein, expressed"	Medtr7g015440.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151417.1.S1_at	A	A1TS	POPTR_0010s19610	POPTR_0010s19610 (9)	scaffold_10:17491495-17493006(-) (10)	NA	Q39033	Phosphoinositide phospholipase C 2	AT3G08510.2	phospholipase C 2 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr3g093840.1	C2; EF-Hand type; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.151418.1.S1_at	A	A1TS	POPTR_0010s00850	POPTR_0010s00850 (9)	scaffold_10:543908-544842(-) (9)	NA	Q9LRZ5	Phospholipase D p1	AT3G16785.1	phospholipase D P1 	LOC_Os05g29050.2	"phospholipase D p1, putative, expressed"	Medtr1g100110.1	Phospholipase D/Transphosphatidylase; Pleckstrin homology-type 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.151420.1.S1_at	A	A1TS	POPTR_0016s11900	POPTR_0016s11900 (10)	scaffold_16:11074684-11075200(+) (10)	NA	Q9SS80	"UPF0503 protein At3g09070, chloroplastic"	AT3G09070.1	Protein of unknown function (DUF740) 	LOC_Os05g37800.1	"DUF740 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151427.1.S1_s_at	A	A1TS	POPTR_0006s11920	POPTR_0006s11920 (11)	scaffold_6:9114384-9115509(-) (11)	NA	NA	NA	AT2G36630.1	Sulfite exporter TauE/SafE family protein 	LOC_Os03g51650.1	"membrane protein, putative, expressed"	Medtr1g073760.1	"membrane protein-like protein, related "	NA	NA	GO:0016021|integral to membrane
PtpAffx.151462.1.S1_s_at	A	A2TS	POPTR_0001s36710	POPTR_0001s36710 (11)//POPTR_0011s09160 (11)	scaffold_1:35428363-35428714(-) (11)//scaffold_11:11317752-11318102(-) (11)	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.1	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.2	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr5g100690.1	"Dihydrolipoamide acetyltransferase, long form "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.151469.1.S1_at	A	A1TS	POPTR_0007s04110	POPTR_0007s04110 (10)	scaffold_7:2465874-2467405(+) (10)	NA	Q941R4	GDP-mannose transporter	AT2G13650.3	golgi nucleotide sugar transporter 1 	LOC_Os08g01610.1	"DUF250 domain containing protein, putative, expressed"	Medtr3g143330.1	"GDP-mannose transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151471.1.S1_at	A	A1TS	POPTR_0015s07760	POPTR_0015s07760 (10)	scaffold_15:9053506-9055215(+) (10)	NA	Q8GYP6	Pentatricopeptide repeat-containing protein At1g18900	AT1G18900.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g44170.1	"pentatricopeptide, putative, expressed"	Medtr2g022110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151493.1.S1_at	A	A1TS	POPTR_0014s14580	POPTR_0014s14580 (11)	scaffold_14:10666224-10669025(-) (11)	NA	P73530	30S ribosomal protein S1 homolog A	AT3G23700.1	Nucleic acid-binding proteins superfamily 	LOC_Os03g62780.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g104300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.151497.1.S1_at	A	A1TS	POPTR_0011s12440	POPTR_0011s12440 (11)	scaffold_11:15178407-15179821(-) (11)	NA	Q2KIY1	Peroxisomal membrane protein 2	AT1G52870.2	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os03g38730.1	"peroxisomal membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.151497.1.S1_s_at	A	A1TS	POPTR_0011s12440	POPTR_0011s12440 (10)	scaffold_11:15178452-15180464(-) (10)	NA	Q2KIY1	Peroxisomal membrane protein 2	AT1G52870.2	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os03g38730.1	"peroxisomal membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.151497.2.S1_at	A	A1TS	POPTR_0001s41510	POPTR_0001s41510 (11)	scaffold_1:41128339-41129368(-) (11)	NA	Q2KIY1	Peroxisomal membrane protein 2	AT1G52870.2	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os03g38730.1	"peroxisomal membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.151516.1.A1_at	A	A1TS	POPTR_0005s09700	POPTR_0005s09700 (11)	scaffold_5:6782133-6782307(-) (11)	NA	Q8T2I8	Serine/threonine-protein kinase sepA	AT3G13530.1	mitogen-activated protein kinase kinase kinase 7 	LOC_Os04g56530.1	"STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g100710.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.151532.1.A1_s_at	A	A1TS	POPTR_0014s16660	POPTR_0014s16660 (11)	scaffold_14:12763742-12764104(+) (11)	NA	P73627	Uncharacterized protein sll1770	AT3G07700.2	Protein kinase superfamily protein 	LOC_Os09g07660.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr3g106570.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151540.1.A1_at	A	A1TS	POPTR_0004s13060	POPTR_0004s13060 (9)	scaffold_23:586158-586340(+) (9)//scaffold_4:12386453-12386635(-) (9)	NA	Q6FRZ3	Endoplasmic reticulum vesicle protein 25	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.151554.1.A1_at	A	A1TA	POPTR_0006s22690	POPTR_0006s22690 (9)	scaffold_6:21627575-21628195(-) (11)	POPTR_1895s00200 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151555.1.A1_at	A	A1TS	POPTR_0019s06290	POPTR_0019s06290 (11)	scaffold_19:6946131-6946657(-) (11)	NA	P81392	Myb-related protein 306	AT1G08810.1	myb domain protein 60 	LOC_Os12g03150.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g103980.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15157.1.S1_at	A	A1TS	POPTR_0012s01120	POPTR_0012s01120 (9)	scaffold_12:774429-774754(-) (9)	NA	Q38953	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G26560.1	"ATP-dependent RNA helicase, putative "	LOC_Os02g19860.1	"pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed"	Medtr1g143710.1	"Helicase, C-terminal; ATP-dependent helicase HrpB; Nucleic acid-binding, OB-fold, subgroup; "	NA	GO:0003723|RNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.151587.1.A1_at	A	A1TS	POPTR_0004s02170	POPTR_0004s02170 (11)	scaffold_4:1339403-1340073(-) (11)	NA	Q9NUW8	Tyrosyl-DNA phosphodiesterase 1	AT5G15170.1	tyrosyl-DNA phosphodiesterase-related 	LOC_Os07g34598.1	"tyrosyl-DNA phosphodiesterase 1, putative, expressed"	Medtr7g047060.1	Tyrosyl-DNA phosphodiesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008081|phosphoric diester hydrolase activity	GO:0005634|nucleus
PtpAffx.151612.1.A1_at	A	A1TS	POPTR_0006s22220	POPTR_0006s22220 (10)	scaffold_6:21268815-21268947(+) (10)	NA	NA	NA	NA	NA	LOC_Os02g33320.3	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.151612.1.A1_s_at	A	A1TS	POPTR_0006s22220	POPTR_0006s22220 (11)	scaffold_6:21268554-21268781(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g33320.3	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.151626.1.A1_at	A	A1TS	POPTR_0001s21610	POPTR_0001s21610 (10)	scaffold_1:20123982-20124510(+) (11)	NA	NA	NA	AT1G68140.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.1	expressed protein	AC233560_2.1	Protein of unknown function DUF1644 AC233560.2 3733-2305 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151632.1.A1_at	A	A1MS	POPTR_0010s12970	POPTR_0010s12970 (10)	scaffold_10:12898506-12898930(+) (10)	NA	NA	NA	AT1G15060.1	"Uncharacterised conserved protein UCP031088, alpha/beta hydrolase "	LOC_Os01g49760.1	expressed protein	Medtr6g086800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151641.1.A1_at	A	A1TS	POPTR_0014s01600	POPTR_0014s01600 (11)	scaffold_14:1502207-1503037(+) (11)	NA	Q58DD9	GPN-loop GTPase 2	AT5G22370.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g34950.1	"ATP binding protein, putative, expressed"	Medtr5g096990.1	"Protein of unknown function, ATP binding "	NA	GO:0000166|nucleotide binding	NA
PtpAffx.151685.1.A1_at	A	A1TS	POPTR_0001s29380	POPTR_0001s29380 (10)	scaffold_1:28085812-28086446(+) (10)	NA	Q3EC11	Probable S-acyltransferase At2g14255	AT2G14255.1	Ankyrin repeat family protein with DHHC zinc finger domain 	LOC_Os11g34860.1	"palmitoyltransferase TIP1, putative, expressed"	Medtr4g121920.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.151746.1.S1_at	A	A1MS	POPTR_0003s04340	POPTR_0003s04340 (11)	scaffold_3:5056405-5056873(+) (11)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT1G17640.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g12850.1	"RNA recognition motif containing protein, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.151763.1.A1_at	A	A1TS	POPTR_0013s14020	POPTR_0013s14020 (11)	scaffold_13:14334425-14334830(-) (11)	NA	NA	NA	AT4G03420.1	Protein of unknown function (DUF789) 	LOC_Os10g35150.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15177.1.S1_at	A	A1MS	POPTR_0013s02600	POPTR_0013s02600 (10)	scaffold_13:1540021-1540501(-) (10)	NA	NA	NA	AT2G24960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g02500.1	conserved hypothetical protein	Medtr5g022470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151773.1.A1_at	A	A1TS	POPTR_0009s03490	POPTR_0009s03490 (9)	scaffold_9:4118726-4118998(+) (10)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.2	OBF-binding protein 3 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.1518.1.A1_at	A	A1TS	POPTR_0009s07510	POPTR_0009s07510 (11)	scaffold_9:6991368-6991753(-) (11)	NA	NA	NA	AT5G12330.4	Lateral root primordium (LRP) protein-related 	LOC_Os01g72490.2	"LRP1, putative, expressed"	Medtr5g096790.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15180.1.S1_at	A	A1TS	POPTR_0009s06980	POPTR_0009s06980 (11)	scaffold_9:6643258-6643581(+) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT3G52140.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g48620.2	"tetratricopeptide repeat, putative, expressed"	Medtr3g030760.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151801.1.A1_at	A	A1TS	POPTR_0009s02580	POPTR_0009s02580 (10)	scaffold_9:3357293-3357802(-) (10)	NA	O49839	"Protein kinase 2A, chloroplastic"	AT1G14370.1	protein kinase 2A 	LOC_Os03g07430.2	"protein kinase domain containing protein, expressed"	Medtr5g095520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.151831.1.A1_a_at	A	A1TS	POPTR_0005s09660	POPTR_0005s09660 (11)	scaffold_5:6759115-6759747(+) (11)	NA	Q96H96	"Para-hydroxybenzoate--polyprenyltransferase, mitochondrial"	AT4G23660.2	polyprenyltransferase 1 	LOC_Os08g23320.1	"para-hydroxybenzoate--polyprenyltransferase, mitochondrial precursor, putative, expressed"	Medtr7g080490.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.151844.1.A1_at	A	A1TS	POPTR_0018s02890	POPTR_0018s02890 (10)	scaffold_18:2530038-2530480(-) (10)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT2G24820.1	translocon at the inner envelope membrane of chloroplasts 55-II 	LOC_Os02g54980.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr3g138540.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.151870.1.A1_at	A	A1TS	POPTR_0003s13970	POPTR_0003s13970 (10)	scaffold_3:14196706-14197157(-) (10)	NA	P0CH01	Putative RING-H2 finger protein ATL21A	AT5G53110.1	RING/U-box superfamily protein 	LOC_Os01g53500.1	"RING-H2 finger protein ATL2M, putative, expressed"	Medtr3g124280.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151873.1.A1_at	A	A1TS	POPTR_0010s15580	POPTR_0010s15580 (10)	scaffold_10:14742357-14743023(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g06510.2	"4Fe-4S binding domain containing protein, expressed"	Medtr2g038230.1	"4Fe-4S ferredoxin, iron-sulfur binding "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.151874.1.A1_at	A	A1TS	POPTR_0019s05510	POPTR_0019s05510 (11)	scaffold_19:5873711-5874905(+) (11)	NA	Q96SZ5	2-aminoethanethiol dioxygenase	AT5G15120.1	Protein of unknown function (DUF1637) 	LOC_Os12g42860.1	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g103170.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.151883.1.A1_s_at	A	A1TS	POPTR_0005s10780	POPTR_0005s10780 (11)	scaffold_5:7739557-7740112(+) (11)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT4G35785.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g50890.1	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.151889.1.A1_at	A	A1MS	POPTR_0001s18120	POPTR_0001s18120 (11)	scaffold_1:15168861-15169075(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g086670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151904.1.A1_at	A	A1TS	POPTR_0003s06390	POPTR_0003s06390 (11)	scaffold_3:7873614-7875360(-) (11)	NA	NA	NA	AT1G54150.1	E3 Ubiquitin ligase family protein 	LOC_Os03g08000.1	expressed protein	Medtr8g025010.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151912.1.A1_at	A	A1TS	POPTR_0007s04120	POPTR_0007s04120 (11)	scaffold_7:2485184-2485712(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G20015.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58070.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151954.1.S1_a_at	A	A2TS	POPTR_0002s04230	POPTR_0002s04230 (11)//POPTR_0005s24310 (11)	scaffold_2:2651308-2651486(-) (11)//scaffold_5:22909126-22909306(+) (11)	NA	Q94JW0	Deoxyhypusine hydroxylase	AT3G58180.1	ARM repeat superfamily protein 	LOC_Os12g06620.1	"deoxyhypusine hydroxylase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151954.1.S1_at	A	A1TS	POPTR_0002s04230	POPTR_0002s04230 (11)	scaffold_2:2651134-2652219(-) (11)	NA	Q94JW0	Deoxyhypusine hydroxylase	AT3G58180.1	ARM repeat superfamily protein 	LOC_Os12g06620.1	"deoxyhypusine hydroxylase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151954.3.S1_a_at	A	A2TS	POPTR_0002s04230	POPTR_0002s04230 (11)//POPTR_0005s24310 (11)	scaffold_2:2652915-2653265(-) (11)//scaffold_5:22907404-22907757(+) (11)	NA	Q94JW0	Deoxyhypusine hydroxylase	AT3G58180.1	ARM repeat superfamily protein 	LOC_Os12g06620.1	"deoxyhypusine hydroxylase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151954.3.S1_at	A	A1TS	POPTR_0005s24310	POPTR_0005s24310 (9)	scaffold_5:22906690-22907823(+) (11)	NA	Q94JW0	Deoxyhypusine hydroxylase	AT3G58180.1	ARM repeat superfamily protein 	LOC_Os12g06620.1	"deoxyhypusine hydroxylase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151964.1.S1_at	A	A1TS	POPTR_0018s05190	POPTR_0018s05190 (11)	scaffold_18:4684502-4685046(+) (11)	NA	O04089	"Zinc transporter 4, chloroplastic"	AT1G10970.1	zinc transporter 4 precursor 	LOC_Os06g37010.2	"metal cation transporter, putative, expressed"	Medtr3g139990.1	"Cytochrome c oxidase, subunit I; Zinc/iron permease "	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.151964.1.S1_s_at	A	A1TS	POPTR_0018s05190	POPTR_0018s05190 (11)	scaffold_18:4685074-4685535(+) (11)	NA	O04089	"Zinc transporter 4, chloroplastic"	AT1G10970.1	zinc transporter 4 precursor 	LOC_Os06g37010.2	"metal cation transporter, putative, expressed"	Medtr3g139990.1	"Cytochrome c oxidase, subunit I; Zinc/iron permease "	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.15197.1.S1_at	A	A1TS	POPTR_0001s00620	POPTR_0001s00620 (10)	scaffold_1:535495-535789(+) (10)	NA	NA	NA	AT4G25225.1	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35736.2); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g13534.1	expressed protein	AC233655_18.1	hypothetical protein AC233655.2 124799-122734 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151978.1.S1_at	A	A1TS	POPTR_0012s08370	POPTR_0012s08370 (10)	scaffold_12:9464956-9465871(-) (10)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.151997.1.S1_s_at	A	A1TS	POPTR_0008s08050	POPTR_0008s08050 (11)	scaffold_8:4990144-4990576(-) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G44680.1	DNA glycosylase superfamily protein 	LOC_Os01g58550.1	"methyladenine glycosylase, putative, expressed"	Medtr2g085500.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.152000.1.S1_s_at	A	A1TS	POPTR_0001s19070	POPTR_0001s19070 (11)	scaffold_1:16363198-16365677(+) (11)	NA	Q869R9	Myb-like protein J	AT3G16350.1	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.152014.1.S1_at	A	A1TS	POPTR_0015s07560	POPTR_0015s07560 (10)	scaffold_15:8845775-8846227(+) (10)	NA	NA	NA	AT1G18850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g02170.2	expressed protein	Medtr3g113570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152018.1.S1_a_at	A	A1TS	POPTR_0002s05630	POPTR_0002s05630 (11)	scaffold_2:3703337-3703555(-) (11)	POPTR_0005s22870 (6)	Q84LH8	Transcription factor PIF5	AT2G43010.2	phytochrome interacting factor 4 	LOC_Os12g41650.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g118010.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.15202.1.S1_at	A	A1TS	POPTR_0006s20430	POPTR_0006s20430 (11)	scaffold_6:19443793-19446873(+) (11)	NA	Q01490	Peptidyl-prolyl cis-trans isomerase B	AT5G35100.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g19610.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr7g134340.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.15203.1.S1_a_at	A	A1TS	POPTR_0007s13650	POPTR_0007s13650 (11)	scaffold_7:13674154-13674474(-) (11)	NA	Q70E96	Aldehyde dehydrogenase family 3 member F1	AT4G36250.1	aldehyde dehydrogenase 3F1 	LOC_Os04g45720.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g090560.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.15203.1.S1_at	A	A1TS	POPTR_0007s13650	POPTR_0007s13650 (11)	scaffold_7:13674083-13674616(-) (11)	NA	Q70E96	Aldehyde dehydrogenase family 3 member F1	AT4G36250.1	aldehyde dehydrogenase 3F1 	LOC_Os04g45720.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g090560.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.152030.1.S1_at	A	A1TS	POPTR_0001s36330	POPTR_0001s36330 (11)	scaffold_1:34891294-34891380(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.1	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152030.1.S1_s_at	A	A1TS	POPTR_0001s36330	POPTR_0001s36330 (11)	scaffold_1:34888626-34891422(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.1	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152037.1.S1_at	A	A1TS	POPTR_0001s36300	POPTR_0001s36300 (11)	scaffold_1:34850367-34851349(-) (11)	NA	Q54GI9	"Prohibitin-1, mitochondrial"	AT5G40770.1	prohibitin 3 	LOC_Os02g37000.1	"mitochondrial prohibitin complex protein 1, putative, expressed"	Medtr3g009610.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152038.1.S1_at	A	A1TS	POPTR_0001s35410	POPTR_0001s35410 (11)	scaffold_1:33746134-33746383(+) (11)	NA	Q6FLQ5	Altered inheritance of mitochondria protein 32	AT5G40510.1	Sucrase/ferredoxin-like family protein 	LOC_Os02g49320.1	"sucrase-related, putative, expressed"	Medtr5g103730.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152041.1.S1_at	A	A1TS	POPTR_0014s04230	POPTR_0014s04230 (11)	scaffold_14:3326528-3327081(-) (11)	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	NA	GO:0004721|phosphoprotein phosphatase activity	NA
PtpAffx.152043.1.S1_s_at	A	A1TS	POPTR_0005s21640	POPTR_0005s21640 (11)	scaffold_5:20749695-20749746(+) (11)	NA	P35684	60S ribosomal protein L3	AT1G43170.8	ribosomal protein 1 	LOC_Os12g07010.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.152047.1.S1_s_at	A	A1TS	POPTR_0001s15390	POPTR_0001s15390 (11)	scaffold_1:12211103-12211495(-) (11)	NA	O80337	Ethylene-responsive transcription factor 1A	AT4G17500.1	ethylene responsive element binding factor 1 	LOC_Os02g43790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr8g105160.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.152054.1.S1_s_at	A	A1TS	POPTR_0001s16300	POPTR_0001s16300 (11)	scaffold_1:13100105-13101041(+) (11)	POPTR_0003s07020 (7)	P52894	Alanine aminotransferase 2	AT1G72330.1	alanine aminotransferase 2 	LOC_Os07g42600.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr8g026620.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.152057.1.S1_s_at	A	A1TS	POPTR_0001s10600	POPTR_0001s10600 (11)	scaffold_1:8253107-8254191(-) (11)	NA	Q42191	Mitochondrial inner membrane protein OXA1	AT5G62050.1	homolog of yeast oxidase assembly 1 (OXA1) 	LOC_Os03g02480.1	"inner membrane protein, putative, expressed"	AC233677_14.1	60 kDa inner membrane insertion protein AC233677.2 80748-73714 E EGN_Mt090430 200	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.152061.1.S1_s_at	A	A2TS	POPTR_0013s05340	POPTR_0013s05340 (11)//POPTR_0019s05160 (11)	scaffold_13:3820897-3821296(-) (11)//scaffold_19:5383604-5384003(+) (11)	NA	O22349	Tubulin alpha-3 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.152074.1.S1_s_at	A	A1TS	POPTR_0006s21090	POPTR_0006s21090 (11)	scaffold_6:20187901-20189105(-) (11)	POPTR_0016s06200 (6)	Q9P6N5	Dihydrosphingosine 1-phosphate phosphatase C823.11	AT3G58490.1	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os03g59070.1	"phosphatase, putative, expressed"	AC235488_22.2	"Phosphoesterase, PA-phosphatase related AC235488.1 98822-95448 F EGN_Mt090430 200"	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.152100.1.S1_at	A	A1TS	POPTR_0012s03160	POPTR_0012s03160 (11)	scaffold_12:2514314-2514780(+) (11)	POPTR_0015s00980 (6)	P09379	GTPase-activating protein GYP7	AT3G49350.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.152112.1.S1_s_at	A	A2TS	POPTR_0001s23610	POPTR_0009s02790 (11)//POPTR_0001s23610 (11)	scaffold_1:22994541-22995350(+) (11)//scaffold_9:3555895-3556705(+) (11)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.2	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152123.1.S1_s_at	A	A1TS	POPTR_0001s02260	POPTR_0001s02260 (11)	scaffold_1:1719786-1720740(+) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G17790.1	SNARE associated Golgi protein family 	LOC_Os02g46660.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152124.1.S1_s_at	A	A1TS	POPTR_0002s19620	POPTR_0002s19620 (11)	scaffold_2:15567162-15567961(+) (11)	NA	Q9S834	"ATP-dependent Clp protease proteolytic subunit 5, chloroplastic"	AT1G02560.1	nuclear encoded CLP protease 5 	LOC_Os03g19510.1	"OsClp4 - Putative Clp protease homologue, expressed"	Medtr1g106610.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.152125.1.S1_at	A	A1TS	POPTR_0011s13820	POPTR_0011s13820 (11)	scaffold_11:16455643-16455682(+) (11)	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.152125.1.S1_s_at	A	A1TS	POPTR_0011s13820	POPTR_0011s13820 (11)	scaffold_11:16455559-16456996(+) (11)	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.152131.1.S1_at	A	A1TS	POPTR_0005s11490	POPTR_0005s11490 (11)	scaffold_5:8300193-8300637(-) (11)	NA	P83332	Thaumatin-like protein 1	AT4G36010.2	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr5g022250.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152137.1.S1_at	A	A1TS	POPTR_0010s21480	POPTR_0010s21480 (11)	scaffold_10:18732711-18733181(+) (11)	NA	NA	NA	AT2G39570.1	ACT domain-containing protein 	LOC_Os05g02220.3	"ACT domain containing protein, expressed"	Medtr7g025660.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.152142.1.S1_s_at	A	A1TS	POPTR_0018s06220	POPTR_0018s06220 (11)	scaffold_18:5939837-5943718(+) (11)	NA	NA	NA	AT4G13400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g48230.1	expressed protein	Medtr1g083900.1	hypothetical protein 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.152148.1.S1_at	A	A1TS	POPTR_0011s05010	POPTR_0011s05010 (11)	scaffold_11:4973683-4974143(+) (11)	NA	NA	NA	AT5G53750.1	CBS domain-containing protein 	LOC_Os10g35630.1	"cystathionin beta synthase protein, putative, expressed"	Medtr2g014790.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152154.1.S1_s_at	A	A1TS	POPTR_0004s22880	POPTR_0004s22880 (11)	scaffold_4:21718716-21718848(+) (11)	NA	Q8W3M7	Uncharacterized membrane protein At4g06598	AT1G58110.2	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os12g09250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.15217.1.S1_at	A	A1TS	POPTR_0009s07750	POPTR_0009s07750 (11)	scaffold_9:7203591-7203948(+) (11)	NA	P92985	Ran-binding protein 1 homolog c	AT5G58590.1	RAN binding protein 1 	LOC_Os05g28290.1	"ranBP1 domain containing protein, expressed"	Medtr6g036210.1	Pleckstrin homology-type 	GO:0046907|intracellular transport	NA	NA
PtpAffx.15217.2.S1_s_at	A	A1TS	POPTR_0001s28550	POPTR_0001s28550 (11)	scaffold_1:27346863-27347346(+) (11)	NA	Q8RWG8	Ran-binding protein 1 homolog b	AT2G30060.1	Pleckstrin homology (PH) domain superfamily protein 	LOC_Os05g28290.1	"ranBP1 domain containing protein, expressed"	Medtr6g036210.1	Pleckstrin homology-type 	GO:0046907|intracellular transport	NA	NA
PtpAffx.152186.1.S1_at	A	A1TS	POPTR_0001s33260	POPTR_0001s33260 (10)	scaffold_1:31454770-31455399(-) (10)	NA	Q52QH4	NAC domain-containing protein 68	AT5G13180.1	NAC domain containing protein 83 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.152227.1.S1_at	A	A1TS	POPTR_0005s16700	POPTR_0005s16700 (11)	scaffold_5:13743336-13744546(-) (11)	POPTR_0002s09500 (6)	Q66KH2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT1G36050.2	Endoplasmic reticulum vesicle transporter protein 	LOC_Os04g38340.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152228.1.S1_at	A	A1TS	POPTR_0004s05240	POPTR_0004s05240 (10)	scaffold_4:3992763-3993326(+) (10)	NA	Q8GYB1	"Nudix hydrolase 15, mitochondrial"	AT1G28960.5	nudix hydrolase homolog 15 	LOC_Os08g28840.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr2g018810.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.152254.1.S1_at	A	A1TS	POPTR_0011s11520	POPTR_0011s11520 (9)	scaffold_11:14267895-14268591(-) (9)	NA	NA	NA	AT2G20562.1	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11600.1	conserved hypothetical protein	Medtr2g018970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152255.1.S1_s_at	A	A1TS	POPTR_0001s41290	POPTR_0001s41290 (11)	scaffold_1:40906857-40907954(-) (11)	NA	Q99LH1	Nucleolar GTP-binding protein 2	AT1G52980.1	GTP-binding family protein 	LOC_Os03g22890.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.152256.1.S1_at	A	A1TS	POPTR_0007s03990	POPTR_0007s03990 (11)	scaffold_7:2382532-2382859(+) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT3G13310.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	CU013523_26.1	"Heat shock protein DnaJ, N-terminal CU013523.3 104000-104817 E EGN_Mt090430 200"	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.152265.1.A1_at	A	A1TS	POPTR_0014s05140	POPTR_0014s05140 (11)	scaffold_14:3911584-3912974(+) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr2g009030.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.15228.1.S1_a_at	A	A1TS	POPTR_0001s35530	POPTR_0001s35530 (11)	scaffold_1:33893168-33894237(+) (11)	NA	NA	NA	AT3G01640.1	glucuronokinase G 	LOC_Os11g11060.1	"GHMP kinases ATP-binding protein, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.152284.1.S1_s_at	A	A1TS	POPTR_0001s33780	POPTR_0001s33780 (11)	scaffold_1:31927725-31929889(-) (11)	NA	P92792	Mitochondrial import receptor subunit TOM20	AT1G27390.1	translocase outer membrane 20-2 	LOC_Os01g69250.1	"mitochondrial import receptor subunit TOM20, putative, expressed"	Medtr3g103730.1	Plant specific mitochondrial import receptor subunit TOM20 	GO:0061024|membrane organization||GO:0045040|protein import into mitochondrial outer membrane	GO:0005515|protein binding	GO:0005742|mitochondrial outer membrane translocase complex
PtpAffx.152289.1.S1_at	A	A1TS	POPTR_0006s20960	POPTR_0006s20960 (11)	scaffold_6:20010716-20011560(-) (11)	NA	Q96DM3	Uncharacterized protein C18orf8	AT3G12010.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os10g26140.3	"CPuORF15 - conserved peptide uORF-containing transcript, expressed"	Medtr7g112420.1	Colon cancer-associated Mic1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152314.1.A1_at	A	A1TS	POPTR_0015s08630	POPTR_0015s08630 (11)	scaffold_15:9946295-9948122(+) (11)	NA	Q501G6	UPF0497 membrane protein At5g62820	AT5G62820.1	Uncharacterised protein family (UPF0497) 	LOC_Os01g47200.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g113600.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.152317.1.A1_at	A	A1TS	POPTR_0016s13770	POPTR_0016s13770 (9)	scaffold_16:12903109-12903492(+) (9)	NA	P37287	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A	AT3G45100.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g16960.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC235487_3.1	"Glycosyl transferase, group 1; Haem peroxidase, plant/fungal/bacterial AC235487.1 8195-11450 E EGN_Mt090430 200"	GO:0006506|GPI anchor biosynthetic process	NA	NA
PtpAffx.152322.1.A1_at	A	A1TS	POPTR_0006s12230	POPTR_0006s12230 (11)	scaffold_6:9364418-9366009(-) (11)	NA	Q869T9	Probable ethanolamine kinase A	AT2G26830.1	Protein kinase superfamily protein 	LOC_Os09g26700.1	"choline/ethanolamine kinase, putative, expressed"	Medtr3g005000.1	"Choline kinase, N-terminal; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152326.1.S1_s_at	A	A1TS	POPTR_0010s00390	POPTR_0010s00390 (11)	scaffold_10:177885-178634(+) (11)	NA	Q41328	Pto-interacting protein 1	AT1G48210.2	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.2	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.152326.2.S1_at	A	A1TS	POPTR_0010s00390	POPTR_0010s00390 (11)	scaffold_10:176611-177077(+) (11)	NA	Q41328	Pto-interacting protein 1	AT1G48210.2	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.2	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.152326.2.S1_s_at	A	A1TS	POPTR_0010s00390	POPTR_0010s00390 (11)	scaffold_10:177065-177470(+) (11)	NA	Q41328	Pto-interacting protein 1	AT1G48210.2	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.2	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.152340.1.S1_at	A	A1MS	POPTR_0015s12250	POPTR_0015s12250 (11)	scaffold_15:12593286-12593415(+) (11)	NA	Q38946	Glutamate dehydrogenase 2	AT5G07440.2	glutamate dehydrogenase 2 	LOC_Os04g45970.1	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.152340.1.S1_s_at	A	A1TS	POPTR_0015s12250	POPTR_0015s12250 (11)	scaffold_15:12592793-12593444(+) (11)	NA	Q38946	Glutamate dehydrogenase 2	AT5G07440.2	glutamate dehydrogenase 2 	LOC_Os04g45970.1	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.152352.1.S1_at	A	A1TS	POPTR_0005s18890	POPTR_0005s18890 (11)	scaffold_5:17306831-17307319(-) (11)	NA	Q9URY7	Putative formamidase C869.04	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008152|metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	NA
PtpAffx.152352.1.S1_s_at	A	A1TS	POPTR_0005s18890	POPTR_0005s18890 (11)	scaffold_5:17306472-17306950(-) (11)	NA	Q9URY7	Putative formamidase C869.04	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008152|metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	NA
PtpAffx.152360.1.S1_at	A	A1TS	POPTR_0009s12060	POPTR_0009s12060 (10)	scaffold_9:9910081-9911698(+) (10)	NA	P52577	Isoflavone reductase homolog P3	AT4G34540.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os02g47610.1	"nmrA-like family domain containing protein, expressed"	Medtr4g095920.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.152363.1.S1_s_at	A	A1TS	POPTR_0002s24910	POPTR_0002s24910 (11)	scaffold_2:22122069-22123277(-) (11)	NA	NA	NA	AT3G07310.1	Protein of unknown function (DUF760) 	LOC_Os11g26890.2	expressed protein	Medtr8g012790.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152367.1.S1_at	A	A1TS	POPTR_0018s02470	POPTR_0018s02470 (11)	scaffold_18:2270113-2270147(+) (11)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os02g08440.1	"OsWRKY71 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g138240.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.152367.1.S1_s_at	A	A2TS	POPTR_0006s27950	POPTR_0006s27950 (11)//POPTR_0018s02470 (11)	scaffold_18:2269874-2269916(+) (11)//scaffold_6:25817603-25817645(+) (11)	NA	Q9C5T4	WRKY transcription factor 18	AT4G31800.2	WRKY DNA-binding protein 18 	LOC_Os09g25060.1	"OsWRKY76 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g022070.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.15237.1.S1_a_at	A	A1TS	POPTR_0001s03980	POPTR_0001s03980 (11)	scaffold_1:3168942-3169295(+) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr4g114440.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.15237.1.S1_x_at	A	A1TS	POPTR_0001s03980	POPTR_0001s03980 (11)	scaffold_1:3168444-3169293(+) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr4g114440.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.15237.2.S1_a_at	A	A1TS	POPTR_0018s11360	POPTR_0018s11360 (11)	scaffold_18:12129882-12130374(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15237.3.S1_at	A	A1TS	POPTR_0003s20870	POPTR_0003s20870 (11)	scaffold_3:19256670-19257385(+) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.15237.5.S1_a_at	A	A2TS	POPTR_0001s03980	POPTR_0001s03980 (11)//POPTR_0003s20870 (11)	scaffold_1:3165798-3166831(+) (11)//scaffold_3:19255938-19257029(+) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr4g114440.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.152395.1.S1_at	A	A1TS	POPTR_0005s22970	POPTR_0005s22970 (11)	scaffold_5:21819046-21819133(+) (11)	NA	Q9XIN8	F-box protein At2g27310	AT2G27310.1	F-box family protein 	LOC_Os04g33820.1	"OsFBX132 - F-box domain containing protein, expressed"	Medtr1g086490.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152395.1.S1_s_at	A	A1TS	POPTR_0005s22970	POPTR_0005s22970 (11)	scaffold_5:21819204-21819985(+) (11)	NA	Q9XIN8	F-box protein At2g27310	AT2G27310.1	F-box family protein 	LOC_Os04g33820.1	"OsFBX132 - F-box domain containing protein, expressed"	Medtr1g086490.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152400.1.S1_at	A	A1TS	POPTR_0008s23010	POPTR_0008s23010 (9)	scaffold_8:18203334-18206290(-) (10)	NA	NA	NA	AT5G49220.1	Protein of unknown function (DUF789) 	LOC_Os07g14310.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152401.1.S1_at	A	A1TS	POPTR_0003s02330	POPTR_0003s02330 (11)	scaffold_3:2403916-2405546(+) (11)	NA	Q03795	Uncharacterized membrane protein YMR155W	AT1G80530.1	Major facilitator superfamily protein 	LOC_Os06g08110.1	"nodulin, putative, expressed"	Medtr8g122300.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152416.1.S1_at	A	A1TS	POPTR_0019s14520	POPTR_0019s14520 (11)	scaffold_19:15294756-15295243(-) (11)	NA	O60749	Sorting nexin-2	AT5G07120.1	sorting nexin 2B 	LOC_Os05g27920.1	"phox domain-containing protein, putative, expressed"	Medtr5g081470.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.15242.1.S1_at	A	A1TS	POPTR_0005s10770	POPTR_0005s10770 (11)	scaffold_5:7729262-7729554(+) (11)	NA	Q9C5Y0	Phospholipase D delta	AT4G35790.2	phospholipase D delta 	LOC_Os09g37100.1	"phospholipase D, putative, expressed"	Medtr5g023030.1	C2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.152425.1.S1_at	A	A1TS	POPTR_0016s13300	POPTR_0016s13300 (11)	scaffold_16:12500217-12500586(+) (11)	NA	Q55DY8	Mitoferrin	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152431.1.S1_at	A	A1TS	POPTR_0015s09970	POPTR_0015s09970 (11)	scaffold_15:11035368-11036025(+) (11)	NA	Q98TX3	Programmed cell death protein 4	AT5G63190.2	MA3 domain-containing protein 	LOC_Os08g02690.1	"MA3 domain containing protein, expressed"	Medtr8g110080.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152437.1.S1_at	A	A1TS	POPTR_0007s00270	POPTR_0007s00270 (11)	scaffold_7:59045-59084(-) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152437.1.S1_s_at	A	A1TS	POPTR_0007s00270	POPTR_0007s00270 (11)	scaffold_7:59005-60126(-) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152437.2.S1_at	A	A1TS	POPTR_0017s00420	POPTR_0017s00420 (11)	scaffold_17:139928-140096(+) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152437.4.S1_s_at	A	A2TS	POPTR_0007s00270	POPTR_0017s00420 (11)//POPTR_0007s00270 (11)	scaffold_17:136172-137166(+) (11)//scaffold_7:62678-63637(-) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152447.1.S1_at	A	A1TS	POPTR_0005s27270	POPTR_0005s27270 (10)	scaffold_5:24987867-24988801(-) (10)	POPTR_0002s01110 (6)	Q5R7B8	Kelch-like protein 20	AT2G30600.4	BTB/POZ domain-containing protein 	LOC_Os05g27880.2	"BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed"	Medtr5g075660.1	BTB/POZ; Galactose-binding like; ; 	GO:0007155|cell adhesion	GO:0005515|protein binding	NA
PtpAffx.152452.2.A1_a_at	A	A1TS	POPTR_0005s19990	POPTR_0005s19990 (11)	scaffold_5:18996892-18997887(+) (11)	NA	Q9CAP8	"Long chain acyl-CoA synthetase 9, chloroplastic"	AT1G77590.1	long chain acyl-CoA synthetase 9 	LOC_Os12g07110.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g100870.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.152452.3.S1_a_at	A	A1TS	POPTR_0001s16370	POPTR_0001s16370 (11)	scaffold_1:13161452-13161889(+) (11)	NA	NA	NA	AT1G53903.1	Protein of unknown function (DUF581) 	LOC_Os09g26370.1	"DUF581 domain containing protein, expressed"	Medtr8g026410.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152453.1.S1_at	A	A2TS	POPTR_0008s04630	POPTR_0008s04630 (11)//POPTR_0010s22220 (10)	scaffold_10:19204390-19206049(-) (10)//scaffold_8:2649581-2652615(+) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g120700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15246.1.A1_at	A	A1TS	POPTR_0001s35550	POPTR_0001s35550 (11)	scaffold_1:33896804-33897314(-) (11)	NA	NA	NA	AT3G27520.1	unknown protein; Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g38180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152464.1.S1_at	A	A1TS	POPTR_0002s22810	POPTR_0002s22810 (10)	scaffold_2:19764098-19764742(-) (11)	NA	Q8L7U5	Serine/threonine-protein phosphatase BSL1	AT4G03080.1	BRI1 suppressor 1 (BSU1)-like 1 	LOC_Os05g05240.1	"serine/threonine protein phosphatase, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.152465.1.S1_s_at	A	A1TS	POPTR_0019s04990	POPTR_0019s04990 (11)	scaffold_19:5195238-5197708(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g53670.1	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152472.1.S1_at	A	A1TS	POPTR_0005s20770	POPTR_0005s20770 (10)	scaffold_5:19901975-19905605(+) (10)	NA	Q54M22	"2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial"	AT1G21400.1	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein 	LOC_Os12g08260.4	"dehydrogenase E1 component domain containing protein, expressed"	Medtr3g143240.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.152473.1.S1_at	A	A2TS	POPTR_0007s12480	POPTR_0007s12480 (11)//POPTR_0005s12730 (9)	scaffold_5:9494491-9495001(+) (9)//scaffold_7:12785288-12785795(-) (11)	NA	O23210	Scarecrow-like protein 15	AT4G36710.1	GRAS family transcription factor 	LOC_Os04g46860.1	"scarecrow, putative, expressed"	Medtr8g093620.1	GRAS transcription factor; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152488.1.S1_s_at	A	A1TS	POPTR_0012s05430	POPTR_0012s05430 (11)	scaffold_12:5065453-5066530(-) (11)	NA	NA	NA	AT5G23040.1	Protein of unknown function (DUF3353) 	LOC_Os09g21250.1	expressed protein	Medtr8g115580.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152506.1.S1_at	A	A2TS	POPTR_0025s00350	POPTR_0025s00350 (11)//POPTR_0006s06020 (9)	scaffold_25:115932-117812(+) (11)//scaffold_6:4279935-4281342(+) (9)	NA	Q9Y5A7	NEDD8 ultimate buster 1	AT2G12550.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os04g55150.2	"UBA/TS-N domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152512.1.A1_s_at	A	A1TS	POPTR_0002s16700	POPTR_0002s16700 (11)	scaffold_2:12484361-12487090(-) (11)	NA	Q8VYU6	Golgin candidate 4	AT2G46180.1	golgin candidate 4 	LOC_Os08g29730.1	"intracellular protein transport protein USO1-related, putative, expressed"	Medtr7g088950.1	"GC4, putative "	GO:0016032|viral reproduction	NA	NA
PtpAffx.152513.1.S1_at	A	A1TS	POPTR_0016s09980	POPTR_0016s09980 (11)	scaffold_16:8109320-8109798(-) (11)	NA	NA	NA	AT3G54020.1	Arabidopsis Inositol phosphorylceramide synthase 1 	LOC_Os01g63060.1	"phosphatidic acid phosphatase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152548.1.S1_a_at	A	A1TS	POPTR_0013s06650	POPTR_0013s06650 (11)	scaffold_13:5334171-5335276(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G33110.1	MATE efflux family protein 	LOC_Os12g03260.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.152583.1.S1_at	A	A1TS	POPTR_0005s17920	POPTR_0005s17920 (10)	scaffold_5:15735142-15735475(-) (10)	NA	P48353	Protein HLJ1	AT2G01710.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g27460.3	"heat shock protein DnaJ, putative, expressed"	Medtr5g075120.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding||GO:0003677|DNA binding	NA
PtpAffx.152585.1.S1_at	A	A1TS	POPTR_0017s06430	POPTR_0017s06430 (11)	scaffold_17:4930335-4930370(+) (11)	NA	NA	NA	AT2G43210.2	Ubiquitin-like superfamily protein 	LOC_Os11g18880.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152585.1.S1_s_at	A	A1TS	POPTR_0017s06430	POPTR_0017s06430 (10)	scaffold_17:4929871-4930575(+) (10)	NA	NA	NA	AT2G43210.2	Ubiquitin-like superfamily protein 	LOC_Os11g18880.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152594.1.S1_at	A	A1TS	POPTR_0011s10520	POPTR_0011s10520 (9)	scaffold_11:13011335-13011605(+) (9)	NA	Q9LJF8	F-box/LRR-repeat protein At3g26922	AT3G26922.1	F-box/RNI-like superfamily protein 	LOC_Os10g03870.1	"OsFBX353 - F-box domain containing protein, expressed"	Medtr3g026410.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152594.2.S1_at	A	A1TS	POPTR_0011s10530	POPTR_0011s10530 (11)	scaffold_11:13018642-13019977(+) (11)	NA	Q9LJF8	F-box/LRR-repeat protein At3g26922	AT3G26922.1	F-box/RNI-like superfamily protein 	LOC_Os08g09920.1	"OsFBX277 - F-box domain containing protein, expressed"	Medtr8g018890.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152597.1.S1_at	A	A1TS	POPTR_0008s13830	POPTR_0008s13830 (9)	scaffold_8:9114643-9115967(+) (11)	NA	NA	NA	AT1G14710.2	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g13560.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152627.1.S1_at	A	A1TS	POPTR_0003s15520	POPTR_0003s15520 (11)	scaffold_3:15272224-15272752(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G44680.1	DNA glycosylase superfamily protein 	LOC_Os01g58550.1	"methyladenine glycosylase, putative, expressed"	Medtr2g085500.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.152634.1.S1_at	A	A1TS	POPTR_0001s06400	POPTR_0001s06400 (10)	scaffold_1:4900525-4900889(-) (10)	NA	Q8GWZ6	Protein SENSITIVITY TO RED LIGHT REDUCED 1	AT5G59560.2	sensitivity to red light reduced protein (SRR1) 	LOC_Os05g02690.1	"sensitivity to red light reduced protein 1, putative, expressed"	Medtr3g020100.1	SRR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152653.1.S1_s_at	A	A1TS	POPTR_0003s00880	POPTR_0003s00880 (11)	scaffold_3:717436-720905(-) (11)	NA	Q9Y6D9	Mitotic spindle assembly checkpoint protein MAD1	AT5G49880.1	mitotic checkpoint family protein 	LOC_Os01g65580.3	"mitotic checkpoint family protein, putative, expressed"	NA	NA	GO:0016032|viral reproduction	NA	NA
PtpAffx.152663.1.S1_s_at	A	A1TS	POPTR_0014s18930	POPTR_0014s18930 (11)	scaffold_14:16529290-16529933(-) (11)	NA	Q6DCY9	HAUS augmin-like complex subunit 3	AT5G48520.1	unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; Bacteria - 41; Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). 	LOC_Os06g08730.1	expressed protein	Medtr1g046340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152677.1.S1_at	A	A1TS	POPTR_0015s05560	POPTR_0015s05560 (11)	scaffold_15:5903198-5903371(-) (11)	NA	Q91WL8	WW domain-containing oxidoreductase	AT4G27760.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g02470.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g090260.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.152677.1.S1_s_at	A	A1TS	POPTR_0015s05560	POPTR_0015s05560 (11)	scaffold_15:5900819-5903200(-) (11)	NA	Q91WL8	WW domain-containing oxidoreductase	AT4G27760.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g02470.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g090260.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.152678.1.A1_at	A	A1TS	POPTR_0004s18640	POPTR_0004s18640 (10)	scaffold_4:18455101-18455547(-) (10)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT4G38430.1	rho guanyl-nucleotide exchange factor 1 	LOC_Os09g37270.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.152681.2.S1_s_at	A	A1TS	POPTR_0004s16510	POPTR_0004s16510 (11)	scaffold_4:16961059-16962060(-) (11)	NA	P45816	SEC14 cytosolic factor	AT2G21520.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g04020.1	expressed protein	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152683.1.S1_at	A	A1TS	POPTR_0010s04950	POPTR_0010s04950 (11)	scaffold_10:6230377-6230848(+) (11)	NA	Q9LV16	"Probable beta-1,3-galactosyltransferase 19"	AT5G62620.1	Galactosyltransferase family protein 	LOC_Os03g58920.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g038320.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.152688.1.S1_at	A	A1TS	POPTR_0016s02270	POPTR_0016s02270 (11)	scaffold_16:1106279-1106729(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152696.1.S1_at	A	A1TS	POPTR_0014s02770	POPTR_0014s02770 (10)	scaffold_14:2306773-2309783(+) (10)	NA	NA	NA	AT5G42930.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr5g017200.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.152705.1.A1_at	A	A1TS	POPTR_0010s18650	POPTR_0010s18650 (11)	scaffold_10:16831212-16831501(-) (11)	NA	Q42807	"Acyl-[acyl-carrier-protein] desaturase, chloroplastic"	AT3G02630.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os04g31070.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr5g024070.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0045300|acyl-[acyl-carrier-protein] desaturase activity	NA
PtpAffx.152709.1.S1_at	A	A1TS	POPTR_0008s05120	POPTR_0008s05120 (11)	scaffold_8:2973654-2974191(+) (11)	NA	NA	NA	AT5G13660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 135 Blast hits to 126 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g025140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152711.1.S1_at	A	A1TS	POPTR_0002s14550	POPTR_0002s14550 (10)	scaffold_2:10814908-10815556(+) (10)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44370.1	"scarecrow, putative, expressed"	Medtr4g029280.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152712.1.S1_at	A	A1TS	POPTR_0002s16840	POPTR_0002s16840 (9)	scaffold_2:12596279-12602181(+) (9)	NA	Q6TDP4	Kelch-like protein 17	AT3G61600.2	POZ/BTB containin G-protein 1 	LOC_Os06g31100.1	"E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.152715.1.S1_at	A	A1TS	POPTR_0005s13910	POPTR_0005s13910 (10)	scaffold_5:10895817-10897519(-) (10)	NA	Q9USQ4	NASP-related protein sim3	AT4G37210.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g03070.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr5g018620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152720.1.S1_at	A	A1TS	POPTR_0004s02870	POPTR_0004s02870 (11)	scaffold_4:1916811-1917532(-) (11)	NA	Q94JL3	Transcription factor bHLH112	AT1G61660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g42180.1	"ethylene-responsive protein related, putative"	Medtr2g011150.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.152726.1.S1_at	A	A1TS	POPTR_0012s06370	POPTR_0012s06370 (9)	scaffold_12:6725304-6725882(-) (10)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.152731.1.S1_at	A	A1TS	POPTR_0010s05750	POPTR_0010s05750 (9)	scaffold_10:7237060-7238301(+) (11)	NA	NA	NA	AT1G67840.1	chloroplast sensor kinase 	LOC_Os12g19530.2	"ATP-binding region, ATPase-like domain-containing protein, putative, expressed"	NA	NA	NA	GO:0005524|ATP binding	NA
PtpAffx.152740.1.S1_at	A	A1TS	POPTR_0013s04210	POPTR_0013s04210 (11)	scaffold_13:2804049-2804500(-) (11)	NA	NA	NA	AT3G04550.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	LOC_Os10g30870.1	expressed protein	Medtr1g093440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152741.1.S1_at	A	A1TS	POPTR_0004s21620	POPTR_0004s21620 (10)	scaffold_4:20658312-20659538(-) (10)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT1G20670.1	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr3g069040.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15275.1.S1_at	A	A2TS	POPTR_0003s22240	POPTR_1112s00210 (11)//POPTR_0003s22240 (11)	scaffold_1112:4122-4408(+) (11)//scaffold_3:20089914-20090200(-) (11)	NA	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.152753.1.S1_at	A	A1TS	POPTR_0005s22860	POPTR_0005s22860 (11)	scaffold_5:21745371-21746608(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT1G06690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os07g05000.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.152756.1.S1_at	A	A1TS	POPTR_0018s12110	POPTR_0018s12110 (9)	scaffold_18:12686638-12688712(-) (9)	NA	NA	NA	AT5G35180.2	Protein of unknown function (DUF1336) 	LOC_Os08g34060.2	"DUF1336 domain containing protein, expressed"	Medtr1g120740.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152765.1.S1_at	A	A1TS	POPTR_0002s12460	POPTR_0002s12460 (10)	scaffold_2:9245115-9245156(+) (10)	NA	Q9C626	F-box protein At1g47056	AT1G47056.1	VIER F-box proteine 1 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152776.1.S1_at	A	A1TS	POPTR_0008s13450	POPTR_0008s13450 (11)	scaffold_8:8852491-8854277(+) (11)	NA	NA	NA	AT1G68060.1	microtubule-associated proteins 70-1 	LOC_Os02g50320.1	"ATMAP70 protein, putative, expressed"	Medtr4g157060.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152785.1.S1_at	A	A1TS	POPTR_0008s16190	POPTR_0008s16190 (11)	scaffold_8:10816243-10816612(-) (11)	POPTR_0008s16230 (6)	NA	NA	AT1G04280.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g43300.1	expressed protein	Medtr1g089770.1	"H1flk, putative "	GO:0001906|cell killing	GO:0005524|ATP binding	NA
PtpAffx.152787.1.S1_s_at	A	A1TS	POPTR_0010s05550	POPTR_0010s05550 (11)	scaffold_10:6987875-6988723(+) (11)	NA	Q94C27	F-box protein At1g70590	AT1G70590.1	F-box family protein 	LOC_Os04g40030.1	"OsFBO17 - F-box and other domain containing protein, expressed"	Medtr5g034530.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152834.1.A1_at	A	A1TS	POPTR_0006s05290	POPTR_0006s05290 (11)	scaffold_6:3744229-3744590(+) (11)	NA	NA	NA	AT3G57570.1	ARM repeat superfamily protein 	NA	NA	Medtr7g110840.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152850.1.A1_a_at	A	A1TS	POPTR_0005s07070	POPTR_0005s07070 (11)	scaffold_5:4734084-4734815(-) (11)	NA	Q0IU52	Aspartic proteinase Asp1	AT4G33490.2	Eukaryotic aspartyl protease family protein 	LOC_Os12g07780.2	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr3g142620.1	"Peptidase aspartic, active site; Immunoglobulin/major histocompatibility complex "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152862.1.A1_s_at	A	A1TS	POPTR_0001s01460	POPTR_0001s01460 (11)	scaffold_1:1093877-1094398(+) (11)	NA	P42735	Cadmium-induced protein AS8	AT4G19070.1	Putative membrane lipoprotein 	LOC_Os07g05040.1	"cadmium-induced protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152869.1.A1_at	A	A1TS	POPTR_0009s02210	POPTR_0009s02210 (10)	scaffold_9:2928753-2929213(-) (10)	NA	P53145	Large subunit GTPase 1	AT1G08410.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g42370.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g067030.1	Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.15290.1.S1_s_at	A	A1TS	POPTR_0007s09930	POPTR_0007s09930 (11)	scaffold_7:9489849-9490843(-) (11)	NA	NA	NA	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g55530.1	"HLS, putative, expressed"	Medtr5g015900.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.152909.1.A1_at	A	A1TS	POPTR_0008s04700	POPTR_0008s04700 (11)	scaffold_8:2702654-2702974(+) (11)	NA	Q7SXR3	Macrophage erythroblast attacher	AT3G55070.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os05g06760.1	"macrophage erythroblast attacher, putative, expressed"	Medtr1g146370.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152927.1.A1_at	A	A1TS	POPTR_0001s18420	POPTR_0001s18420 (11)	scaffold_1:15479980-15480235(-) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.152938.1.A1_at	A	A1TS	POPTR_0008s02930	POPTR_0008s02930 (11)	scaffold_8:1515482-1517590(+) (11)	NA	NA	NA	AT3G52180.2	dual specificity protein phosphatase (DsPTP1) family protein 	LOC_Os03g01750.7	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.152942.1.A1_at	A	A1TS	POPTR_0008s11930	POPTR_0008s11930 (9)	scaffold_8:7687253-7687481(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1530.1.S1_at	A	A1TS	POPTR_0010s14870	POPTR_0010s14870 (11)	scaffold_10:14349862-14350764(+) (11)	NA	Q96JB2	Conserved oligomeric Golgi complex subunit 3	AT1G73430.2	sec34-like family protein 	LOC_Os08g34970.1	"conserved oligomeric Golgi complex component 3, putative, expressed"	Medtr8g133280.1	Sec34-like protein 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane||GO:0005801|cis-Golgi network
PtpAffx.153010.1.A1_a_at	A	A2TS	POPTR_0006s13940	POPTR_0018s07390 (11)//POPTR_0006s13940 (11)	scaffold_18:7643714-7643790(-) (11)//scaffold_6:11175098-11175174(-) (11)	NA	P33081	Auxin-induced protein 15A	AT5G20810.1	SAUR-like auxin-responsive protein family  	LOC_Os09g26610.1	"OsSAUR38 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g133050.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153010.2.A1_at	A	A1TS	POPTR_0006s13940	POPTR_0006s13940 (11)	scaffold_6:11174626-11175107(-) (11)	NA	P33081	Auxin-induced protein 15A	AT5G20810.1	SAUR-like auxin-responsive protein family  	LOC_Os09g26610.1	"OsSAUR38 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g133050.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15302.1.S1_s_at	A	A1TS	POPTR_0014s11790	POPTR_0014s11790 (11)	scaffold_14:8755454-8756137(+) (11)	NA	P38661	Probable protein disulfide-isomerase A6	AT2G47470.1	thioredoxin family protein 	LOC_Os05g06430.2	"OsPDIL2-1  protein disulfide isomerase PDIL2-1, expressed"	Medtr1g107440.1	"Thioredoxin-related; Thioredoxin domain 2; Endoplasmic reticulum ERp29, C-terminal; "	GO:0045454|cell redox homeostasis	NA	GO:0005783|endoplasmic reticulum
PtpAffx.15302.2.S1_s_at	A	A2TS	POPTR_0002s19940	POPTR_0002s19940 (11)//POPTR_0014s11790 (11)	scaffold_14:8752654-8753906(+) (11)//scaffold_2:15877279-15878366(+) (11)	NA	P38661	Probable protein disulfide-isomerase A6	AT2G47470.1	thioredoxin family protein 	LOC_Os01g23740.1	"OsPDIL2-2  protein disulfide isomerase PDIL2-2, expressed"	Medtr1g107440.1	"Thioredoxin-related; Thioredoxin domain 2; Endoplasmic reticulum ERp29, C-terminal; "	GO:0045454|cell redox homeostasis	NA	GO:0005783|endoplasmic reticulum
PtpAffx.153051.1.A1_at	A	A1MS	POPTR_0008s15880	POPTR_0008s15880 (11)	scaffold_8:10602878-10603398(+) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
PtpAffx.153084.1.A1_at	A	A1TS	POPTR_0019s14840	POPTR_0019s14840 (10)	scaffold_19:15500108-15500721(-) (10)	NA	NA	NA	AT5G58375.1	Methyltransferase-related protein 	LOC_Os11g02200.1	expressed protein	Medtr5g082910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153087.1.A1_at	A	A1TS	POPTR_0007s06900	POPTR_0007s06900 (11)	scaffold_7:5215408-5217487(+) (11)	NA	B9H5L9	"Lipoyl synthase, mitochondrial"	AT2G20860.1	lipoic acid synthase 1 	LOC_Os04g38330.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.153100.1.A1_at	A	A1MS	POPTR_0010s00460	POPTR_0010s00460 (11)	scaffold_10:232782-232970(-) (11)	NA	NA	NA	AT1G09520.1	"LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr8g133790.1	"Zinc finger, PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153100.1.A1_s_at	A	A1TS	POPTR_0010s00460	POPTR_0010s00460 (11)	scaffold_10:232957-233325(-) (11)	NA	NA	NA	AT1G09520.1	"LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr8g133790.1	"Zinc finger, PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153102.1.A1_at	A	A1TS	POPTR_0016s08370	POPTR_0016s08370 (11)	scaffold_16:6176756-6177602(+) (11)	NA	Q9LHJ9	Probable protein phosphatase 2C 38	AT3G12620.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	AC235022_10.1	Protein phosphatase 2C-like; AC235022.1 67966-70494 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153111.1.A1_at	A	A1MA	POPTR_0012s00900	POPTR_0012s00900 (10)	scaffold_12:583914-584382(+) (10)	NA	Q54NM9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3	AT1G34130.1	staurosporin and temperature sensitive 3-like b 	LOC_Os04g57890.1	"oligosaccharyl transferase, putative, expressed"	Medtr6g089790.1	"Oligosaccharyl transferase, STT3 subunit "	GO:0006486|protein amino acid glycosylation	GO:0004576|oligosaccharyl transferase activity	GO:0016020|membrane
PtpAffx.153121.1.A1_at	A	A1TS	POPTR_0005s20100	POPTR_0005s20100 (11)	scaffold_5:19101888-19102376(-) (11)	NA	Q9XI00	F-box protein 7	AT1G21760.1	F-box protein 7 	LOC_Os04g35190.1	"OsFBX133 - F-box domain containing protein, expressed"	Medtr3g100510.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153123.1.S1_at	A	A1TS	POPTR_0003s10390	POPTR_0003s10390 (10)	scaffold_3:11388207-11389019(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g089630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153132.1.A1_at	A	A1MS	POPTR_0009s00950	POPTR_0009s00950 (9)	scaffold_9:1093080-1093559(+) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT3G44880.1	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain 	LOC_Os03g05310.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g076120.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.15315.1.S1_at	A	A1TS	POPTR_0012s09210	POPTR_0012s09210 (11)	scaffold_12:10259871-10260711(-) (11)	NA	Q42539	Protein-L-isoaspartate O-methyltransferase	AT3G48330.2	protein-l-isoaspartate methyltransferase 1 	LOC_Os04g40540.3	"protein-L-isoaspartate O-methyltransferase, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0004719|protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	NA
PtpAffx.153171.1.A1_a_at	A	A1TS	POPTR_0010s24710	POPTR_0010s24710 (11)	scaffold_10:20766760-20767041(+) (11)	NA	Q869R9	Myb-like protein J	AT5G04760.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153194.1.A1_at	A	A1TS	POPTR_0010s20220	POPTR_0010s20220 (10)	scaffold_10:17902618-17902871(+) (10)	NA	Q9FDW1	Transcription factor MYB44	AT3G55730.1	myb domain protein 109 	LOC_Os01g63160.1	"MYB family transcription factor, putative, expressed"	Medtr3g148280.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153202.1.A1_s_at	A	A1TS	POPTR_0015s04430	POPTR_0015s04430 (11)	scaffold_15:4580690-4580853(+) (11)	NA	NA	NA	AT1G18180.1	Protein of unknown function (DUF1295) 	LOC_Os03g50070.1	"DUF1295 domain containing protein, putative, expressed"	Medtr4g155170.1	Protein of unknown function DUF1295 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153202.2.A1_at	A	A1MS	POPTR_0015s04430	POPTR_0015s04430 (11)	scaffold_15:4579650-4580116(+) (11)	NA	NA	NA	AT1G18180.1	Protein of unknown function (DUF1295) 	LOC_Os03g50070.1	"DUF1295 domain containing protein, putative, expressed"	Medtr4g155170.1	Protein of unknown function DUF1295 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153211.1.A1_at	A	A1TS	POPTR_0005s24450	POPTR_0005s24450 (11)	scaffold_5:22987755-22988141(-) (11)	NA	Q9LTC5	Ethylene-responsive transcription factor ERF098	AT3G23230.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g18650.1	AP2 domain containing protein	Medtr4g072660.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.153212.1.A1_at	A	A1TS	POPTR_0011s06820	POPTR_0011s06820 (11)	scaffold_11:7495914-7496465(+) (11)	NA	O49403	Heat stress transcription factor A-4a	AT4G18880.1	heat shock transcription factor  A4A 	LOC_Os01g54550.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g135910.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.153229.1.A1_at	A	A1TS	POPTR_0009s05010	POPTR_0009s05010 (11)	scaffold_9:5213862-5214016(-) (11)	NA	Q56Y11	Dehydrodolichyl diphosphate synthase 2	AT5G58770.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os01g63830.1	"dehydrodolichyl diphosphate synthase, putative, expressed"	Medtr5g078680.1	Di-trans-poly-cis-decaprenylcistransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
PtpAffx.153237.1.A1_at	A	A1TS	POPTR_0009s03750	POPTR_0009s03750 (11)	scaffold_9:4357805-4362081(-) (11)	NA	Q8GYC7	"PGR5-like protein 1B, chloroplastic"	AT5G59400.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g02010.1	expressed protein	Medtr2g116720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153237.2.A1_at	A	A1TS	POPTR_0001s24810	POPTR_0001s24810 (11)	scaffold_1:24062984-24063171(+) (11)	NA	Q8GYC7	"PGR5-like protein 1B, chloroplastic"	AT5G59400.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g02010.1	expressed protein	Medtr2g116720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153237.2.A1_s_at	A	A1TS	POPTR_0001s24810	POPTR_0001s24810 (11)	scaffold_1:24062254-24063195(+) (11)	NA	Q8GYC7	"PGR5-like protein 1B, chloroplastic"	AT5G59400.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g02010.1	expressed protein	Medtr2g116720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153242.1.S1_s_at	A	A1TS	POPTR_0019s08540	POPTR_0019s08540 (11)	scaffold_19:10048606-10050057(-) (11)	NA	P35017	"Superoxide dismutase [Mn], mitochondrial"	AT3G10920.1	manganese superoxide dismutase 1 	LOC_Os05g25850.1	"superoxide dismutase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
PtpAffx.15326.1.A1_at	A	A1TS	POPTR_0018s09500	POPTR_0018s09500 (10)	scaffold_18:10381727-10382158(+) (10)	NA	O34948	Uncharacterized oxidoreductase ykwC	AT4G29120.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os01g53910.1	"dehydrogenase, putative, expressed"	Medtr4g159920.1	"6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal-like; "	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.15327.3.S1_at	A	A1TS	POPTR_0010s06970	POPTR_0010s06970 (11)	scaffold_10:8203146-8203249(-) (11)//scaffold_10:8229154-8229257(-) (10)	NA	O80763	Probable nucleoredoxin 1	AT1G60420.1	DC1 domain-containing protein 	LOC_Os03g29190.2	"PDI, putative, expressed"	Medtr3g157120.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin fold "	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.153283.1.A1_at	A	A1TS	POPTR_0008s20660	POPTR_0008s20660 (10)	scaffold_8:14565816-14566043(+) (10)	NA	Q9C0Y8	UPF0613 protein PB24D3.06c	AT5G19050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g11060.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153292.1.A1_at	A	A1TS	POPTR_0005s24290	POPTR_0005s24290 (11)	scaffold_5:22891918-22892468(+) (11)	NA	NA	NA	AT4G17810.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g14130.1	ZOS5-05 - C2H2 zinc finger protein	Medtr1g090030.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.153303.1.A1_at	A	A1TS	POPTR_0011s04460	POPTR_0011s04460 (10)	scaffold_11:4436730-4437064(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153313.1.A1_at	A	A2TS	POPTR_0016s14440	POPTR_0016s14440 (11)//POPTR_0016s14460 (9)	scaffold_16:13649095-13649481(+) (11)//scaffold_16:13661211-13661597(+) (11)	NA	P24465	Cytochrome P450 71A1	AT3G48320.1	"cytochrome P450, family 71, subfamily A, polypeptide 21 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.153313.2.A1_a_at	A	A2TS	POPTR_0016s14440	POPTR_0016s14440 (11)//POPTR_0016s14460 (9)	scaffold_16:13648636-13649517(+) (11)//scaffold_16:13660755-13661633(+) (11)	NA	P24465	Cytochrome P450 71A1	AT3G48320.1	"cytochrome P450, family 71, subfamily A, polypeptide 21 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.153340.1.A1_at	A	A1TS	POPTR_0008s16060	POPTR_0008s16060 (10)	scaffold_8:10726871-10727188(+) (10)	NA	Q75LD5	Probable ion channel CASTOR	AT5G43745.1	Protein of unknown function (DUF1012) 	LOC_Os03g06720.1	expressed protein	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153346.1.A1_at	A	A1TS	POPTR_0005s15650	POPTR_0005s15650 (11)	scaffold_5:12258750-12259150(+) (11)	NA	NA	NA	AT5G16110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153358.1.A1_at	A	A1MS	POPTR_0004s09230	POPTR_0004s09230 (10)	scaffold_4:7748229-7748384(-) (10)	POPTR_0229s00230 (7)//POPTR_0004s09380 (7)	NA	NA	AT1G64820.1	MATE efflux family protein 	LOC_Os01g31980.2	"MATE efflux family protein, putative, expressed"	Medtr7g094030.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153358.1.A1_s_at	A	A3TS	POPTR_0004s09230	POPTR_0004s09230 (11)//POPTR_0229s00230 (10)//POPTR_0004s09380 (10)	scaffold_229:9595-9782(+) (10)//scaffold_4:7748370-7748557(-) (11)//scaffold_4:7907982-7908169(+) (10)	NA	NA	NA	AT1G64820.1	MATE efflux family protein 	LOC_Os01g31980.2	"MATE efflux family protein, putative, expressed"	Medtr7g094030.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153364.1.A1_at	A	A1TS	POPTR_0004s06480	POPTR_0004s06480 (10)	scaffold_4:5249639-5250022(+) (10)	NA	Q8RXZ4	Probable protein phosphatase 2C 18	AT1G79630.1	Protein phosphatase 2C family protein 	LOC_Os08g39100.1	"protein phosphatase 2C, putative, expressed"	Medtr7g089830.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153374.1.A1_at	A	A1TS	POPTR_0004s08180	POPTR_0004s08180 (11)	scaffold_4:6693053-6693430(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153377.1.A1_at	A	A1TS	POPTR_0001s30490	POPTR_0001s30490 (11)	scaffold_1:28984555-28984660(+) (11)	NA	Q92466	DNA damage-binding protein 2	AT4G34280.1	transducin family protein / WD-40 repeat family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153378.1.A1_at	A	A1TS	POPTR_0005s22470	POPTR_0005s22470 (11)	scaffold_5:21378478-21380780(-) (11)	NA	NA	NA	AT1G06510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). 	LOC_Os01g50120.2	expressed protein	Medtr5g098730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153379.1.A1_at	A	A1TS	POPTR_0006s26080	POPTR_0006s26080 (11)	scaffold_6:24375290-24377219(+) (11)	NA	P51568	Serine/threonine-protein kinase AFC3	AT4G32660.1	Protein kinase superfamily protein 	LOC_Os01g40840.1	"serine/threonine-protein kinase AFC3, putative, expressed"	Medtr3g132770.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.153383.1.A1_at	A	A1MS	POPTR_0001s16710	POPTR_0001s16710 (11)	scaffold_1:13498011-13498544(+) (11)	NA	NA	NA	AT1G72510.2	Protein of unknown function (DUF1677) 	LOC_Os06g09900.1	expressed protein	Medtr8g025320.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153386.1.A1_a_at	A	A1TS	POPTR_0002s26380	POPTR_0002s26380 (11)	scaffold_2:23366351-23367657(+) (11)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT1G45160.2	Protein kinase superfamily protein 	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.153388.1.A1_at	A	A1TS	POPTR_0001s27330	POPTR_0001s27330 (11)	scaffold_1:26234214-26235694(+) (11)	NA	NA	NA	AT1G07985.1	Expressed protein 	NA	NA	AC235669_8.1	"T6D22.8, putative AC235669.1 36263-36878 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153413.1.A1_at	A	A1TS	POPTR_0001s47440	POPTR_0001s47440 (11)	scaffold_1:47632808-47633396(-) (11)	NA	Q5SSW2	Proteasome activator complex subunit 4	AT3G13330.1	proteasome activating protein 200 	LOC_Os06g19730.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153422.1.A1_at	A	A1TS	POPTR_0015s15440	POPTR_0015s15440 (10)	scaffold_15:14716121-14716670(-) (10)	NA	NA	NA	AT2G32210.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 214 Blast hits to 214 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153434.1.A1_s_at	A	A1TS	POPTR_0014s16670	POPTR_0014s16670 (11)	scaffold_14:12771099-12771390(+) (11)	NA	Q8S4Y1	"Acetyl-CoA acetyltransferase, cytosolic 1"	AT5G48230.2	acetoacetyl-CoA thiolase 2 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	Medtr5g106000.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153438.1.A1_at	A	A3TS	POPTR_0013s00360	POPTR_0353s00210 (11)//POPTR_0013s00360 (11)//POPTR_0353s00200 (9)	scaffold_13:132572-143747(-) (11)//scaffold_13:135780-143939(-) (9)//scaffold_353:206-677(+) (11)//scaffold_353:8557-9028(+) (11)	NA	NA	NA	AT3G05858.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153440.1.A1_s_at	A	A1TS	POPTR_0013s08030	POPTR_0013s08030 (11)	scaffold_13:6921838-6935928(-) (11)	NA	Q94AI7	Protein TOPLESS	AT1G15750.4	Transducin family protein / WD-40 repeat family protein 	LOC_Os08g06480.1	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr2g126840.2	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153441.1.A1_at	A	A1TS	POPTR_0006s27160	POPTR_0006s27160 (11)	scaffold_6:25154226-25155487(+) (11)	NA	NA	NA	AT5G25340.1	Ubiquitin-like superfamily protein 	LOC_Os02g09530.1	expressed protein	Medtr1g014010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153444.1.A1_at	A	A1TA	POPTR_0008s15080	POPTR_0008s15080 (11)	scaffold_8:10070922-10071140(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153445.1.A1_at	A	A1TS	POPTR_0016s03870	POPTR_0016s03870 (11)	scaffold_16:2159962-2160434(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os11g34090.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153446.1.A1_at	A	A1TS	POPTR_0008s16810	POPTR_0008s16810 (11)	scaffold_8:11316796-11317287(+) (11)	NA	NA	NA	AT5G43310.2	COP1-interacting protein-related 	LOC_Os03g64320.1	expressed protein	Medtr2g093240.1	"COP1-interacting protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153449.1.A1_at	A	A1TS	POPTR_0016s03170	POPTR_0016s03170 (11)	scaffold_16:1616762-1616943(-) (11)	NA	O22207	Ubiquitin carboxyl-terminal hydrolase 5	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.153471.1.A1_at	A	A1TS	POPTR_0008s06810	POPTR_0008s06810 (11)	scaffold_8:4081856-4082291(+) (11)	NA	Q0UPV4	DNA replication complex GINS protein PSF3	AT3G55490.1	GINS complex protein 	LOC_Os08g17294.2	"PSF3 - Putative GINS complex subunit, expressed"	Medtr3g093620.1	"GINS complex, Psf3 component "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153471.2.A1_a_at	A	A2TS	POPTR_0008s06810	POPTR_0010s19650 (11)//POPTR_0008s06810 (11)	scaffold_10:17513450-17515049(-) (11)//scaffold_8:4080293-4081842(+) (11)	NA	Q0UPV4	DNA replication complex GINS protein PSF3	AT3G55490.1	GINS complex protein 	LOC_Os08g17294.2	"PSF3 - Putative GINS complex subunit, expressed"	Medtr3g093620.1	"GINS complex, Psf3 component "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153471.2.A1_at	A	A1TS	POPTR_0010s19650	POPTR_0010s19650 (11)	scaffold_10:17513243-17515081(-) (11)	NA	Q0UPV4	DNA replication complex GINS protein PSF3	AT3G55490.1	GINS complex protein 	LOC_Os08g17294.2	"PSF3 - Putative GINS complex subunit, expressed"	Medtr3g093620.1	"GINS complex, Psf3 component "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153484.1.A1_at	A	A1MA	POPTR_0417s00200	POPTR_0417s00200 (10)	scaffold_186:90-258(-) (11)//scaffold_186:9344-9512(-) (11)//scaffold_417:4506-4674(+) (11)//scaffold_417:12468-12636(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15351.1.S1_a_at	A	A1TS	POPTR_0001s18620	POPTR_0001s18620 (11)	scaffold_1:15675640-15675860(+) (11)	NA	Q3URE1	"Acyl-CoA synthetase family member 3, mitochondrial"	AT3G16170.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g55590.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084070.1	AMP-dependent synthetase and ligase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15351.1.S1_at	A	A1TS	POPTR_0001s18620	POPTR_0001s18620 (11)	scaffold_1:15674787-15676049(+) (11)	NA	Q3URE1	"Acyl-CoA synthetase family member 3, mitochondrial"	AT3G16170.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g55590.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084070.1	AMP-dependent synthetase and ligase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153510.1.A1_at	A	A1TS	POPTR_0001s36080	POPTR_0001s36080 (11)	scaffold_1:34554625-34554840(+) (11)	NA	NA	NA	AT5G40690.1	"CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os05g23130.1	expressed protein	Medtr4g079730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153510.1.A1_s_at	A	A1TS	POPTR_0001s36080	POPTR_0001s36080 (11)	scaffold_1:34554417-34554909(+) (11)	NA	NA	NA	AT5G40690.1	"CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os05g23130.1	expressed protein	Medtr4g079730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153513.1.A1_at	A	A1TS	POPTR_0013s05630	POPTR_0013s05630 (11)	scaffold_13:4043161-4043290(-) (11)	NA	O75175	CCR4-NOT transcription complex subunit 3	AT5G18230.1	transcription regulator NOT2/NOT3/NOT5 family protein 	LOC_Os03g44900.1	"CCR4-NOT transcription factor, putative, expressed"	Medtr7g100260.1	"Not CCR4-Not complex component, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.153514.1.A1_at	A	A1MS	POPTR_0017s08450	POPTR_0017s08450 (11)	scaffold_17:7001593-7002090(-) (11)	NA	Q9ZTS1	Probable methionyl-tRNA synthetase	AT4G13780.1	"methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative "	LOC_Os06g31210.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.153529.1.A1_at	A	A1TS	POPTR_0005s17720	POPTR_0005s17720 (11)	scaffold_5:15416913-15417329(-) (11)	NA	Q4KYM5	Cyclin-D4-2	AT5G65420.1	CYCLIN D4;1 	LOC_Os08g37390.1	"cyclin, putative, expressed"	Medtr3g148920.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.15353.1.S1_at	A	A1TS	POPTR_0011s17210	POPTR_0011s17210 (11)	scaffold_11:18789491-18789952(-) (11)	NA	NA	NA	AT5G56250.1	hapless 8 	LOC_Os04g39560.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153535.1.A1_at	A	A1MS	POPTR_0010s08660	POPTR_0010s08660 (10)	scaffold_10:9550267-9550814(+) (10)	NA	Q53389	N-carbamoyl-L-amino acid hydrolase	AT5G43600.1	ureidoglycolate amidohydrolase 	LOC_Os12g40550.1	"peptidase, putative, expressed"	Medtr1g089890.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008237|metallopeptidase activity	NA
PtpAffx.153544.1.A1_at	A	A1TS	POPTR_0009s08610	POPTR_0009s08610 (10)	scaffold_9:7826743-7827402(+) (10)	NA	NA	NA	AT2G14530.1	TRICHOME BIREFRINGENCE-LIKE 13 	LOC_Os07g31550.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr4g121840.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153545.1.A1_at	A	A1TS	POPTR_0006s10670	POPTR_0006s10670 (10)	scaffold_6:8008316-8010244(-) (10)	NA	Q5LYJ2	D-alanine--D-alanine ligase	AT3G08840.2	D-alanine--D-alanine ligase family 	LOC_Os07g49110.1	"D-alanine--D-alanine ligase family, putative, expressed"	Medtr7g077430.1	"D-alanine--D-alanine ligase, N-terminal; ATP-grasp fold; "	GO:0009252|peptidoglycan biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0010382|cellular cell wall macromolecule metabolic process	GO:0008716|D-alanine-D-alanine ligase activity	GO:0005618|cell wall
PtpAffx.153553.1.A1_at	A	A1TS	POPTR_0015s05590	POPTR_0015s05590 (11)	scaffold_15:5936518-5936720(+) (11)	NA	Q9FGY4	F-box protein At5g49610	AT5G49610.1	F-box family protein 	LOC_Os07g35050.1	"OsFBX237 - F-box domain containing protein, expressed"	Medtr2g037610.2	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153576.1.A1_at	A	A1TS	POPTR_0019s13650	POPTR_0019s13650 (11)	scaffold_19:14521941-14522416(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153586.1.A1_at	A	A1TS	POPTR_0014s12790	POPTR_0014s12790 (11)	scaffold_14:9423590-9423718(-) (11)	NA	Q110D7	Peptide chain release factor 1	AT3G62910.1	Peptide chain release factor 1 	LOC_Os11g43600.1	"peptide chain release factor protein, putative, expressed"	Medtr7g130010.1	Peptide chain release factor 1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
PtpAffx.153603.1.A1_at	A	A1TS	POPTR_0012s14940	POPTR_0012s14940 (11)	scaffold_12:14647643-14648088(+) (11)	NA	Q2MY58	Patatin group A-3	AT3G54950.1	patatin-like protein 6 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g121000.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.153619.1.A1_at	A	A1TS	POPTR_0006s22570	POPTR_0006s22570 (9)	scaffold_6:21551385-21551508(+) (9)	NA	Q9AST6	Vacuolar protein sorting-associated protein 55 homolog	AT3G11530.2	Vacuolar protein sorting 55 (VPS55) family protein 	LOC_Os01g73570.2	"vacuolar protein sorting 55 family protein, putative, expressed"	Medtr5g014160.1	Vacuolar protein sorting 55 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153625.1.A1_s_at	A	A1TS	POPTR_0001s46570	POPTR_0001s46570 (11)	scaffold_1:46941843-46941991(+) (11)	NA	Q94C59	Patellin-4	AT1G30690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os06g45990.2	"patellin-5, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153627.1.A1_s_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22924409-22924456(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153629.1.A1_at	A	A1TS	POPTR_0008s04240	POPTR_0008s04240 (11)	scaffold_8:2374753-2375225(-) (11)	NA	NA	NA	AT2G35790.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724); Has 116 Blast hits to 116 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os03g63680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153669.1.A1_s_at	A	A1TS	POPTR_0019s15260	POPTR_0019s15260 (11)	scaffold_19:15809523-15810998(-) (11)	NA	P46269	Cytochrome b-c1 complex subunit 8	AT5G05370.1	"Cytochrome b-c1 complex, subunit 8 protein "	LOC_Os06g07969.1	"cytochrome b-c1 complex subunit 8, putative, expressed"	Medtr5g083510.1	"Cytochrome b-c1 complex subunit 8 (exp=-1; wgp=-1; cg=-1; clo, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153682.1.A1_s_at	A	A1TS	POPTR_0002s20400	POPTR_0002s20400 (11)	scaffold_2:16460103-16460246(-) (11)	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os03g22180.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.153697.1.A1_at	A	A1TS	POPTR_0014s02360	POPTR_0014s02360 (11)	scaffold_14:1985232-1985350(-) (11)	NA	NA	NA	AT3G46630.1	Protein of unknown function (DUF3223) 	LOC_Os08g21700.1	"DCL, chloroplast precursor, putative, expressed"	Medtr3g147240.1	"Protein DCL, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153697.1.A1_s_at	A	A1TS	POPTR_0014s02360	POPTR_0014s02360 (11)	scaffold_14:1985378-1985838(-) (11)	NA	NA	NA	AT3G46630.1	Protein of unknown function (DUF3223) 	LOC_Os08g21700.1	"DCL, chloroplast precursor, putative, expressed"	Medtr3g147240.1	"Protein DCL, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153700.1.A1_at	A	A1TS	POPTR_0001s47480	POPTR_0001s47480 (11)	scaffold_1:47655275-47656332(-) (11)	NA	Q8VE80	THO complex subunit 3	AT5G56130.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os09g12710.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g080610.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153701.1.A1_a_at	A	A2TS	POPTR_0005s02710	POPTR_0013s01970 (11)//POPTR_0005s02710 (11)	scaffold_13:1144928-1145709(+) (11)//scaffold_5:1734118-1734888(+) (11)	NA	Q9Y4C1	Lysine-specific demethylase 3A	AT1G09060.3	"Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase "	LOC_Os03g22540.1	"jmjC domain containing protein, expressed"	Medtr1g099670.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153701.1.A1_at	A	A1TS	POPTR_0013s01970	POPTR_0013s01970 (11)	scaffold_13:1143646-1145687(+) (11)	NA	Q5HZN1	Lysine-specific demethylase 3A-B	AT1G09060.3	"Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase "	LOC_Os03g22540.1	"jmjC domain containing protein, expressed"	Medtr1g099670.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153721.1.A1_at	A	A1TS	POPTR_0006s26850	POPTR_0006s26850 (10)	scaffold_6:24926996-24927236(-) (11)	NA	Q3V384	Lactation elevated protein 1	AT2G25530.1	AFG1-like ATPase family protein 	LOC_Os03g63500.1	"ATPase, AFG1 family domain containing protein, expressed"	Medtr1g013700.1	AFG1-like ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.153725.1.A1_at	A	A1TS	POPTR_0003s21120	POPTR_0003s21120 (11)	scaffold_3:19402886-19403392(+) (11)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153729.1.A1_at	A	A1TS	POPTR_0014s10750	POPTR_0014s10750 (11)	scaffold_14:8039626-8039971(+) (11)	NA	Q9ZSI7	Probable WRKY transcription factor 47	AT4G01720.1	WRKY family transcription factor 	LOC_Os01g18584.1	"OsWRKY9 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g134120.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.153735.1.A1_at	A	A1TS	POPTR_0016s03460	POPTR_0016s03460 (11)	scaffold_16:1832741-1833205(+) (11)	NA	O80674	Transcription factor bHLH106	AT2G41130.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr7g106450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.153748.1.A1_at	A	A1TS	POPTR_0005s21910	POPTR_0005s21910 (10)	scaffold_5:20959605-20962124(-) (11)	NA	Q03829	Uncharacterized mitochondrial carrier YMR166C	AT4G39460.2	S-adenosylmethionine carrier 1 	LOC_Os05g29860.2	"mitochondrial carrier protein, putative, expressed"	Medtr4g141110.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15375.1.S1_at	A	A1TS	POPTR_0006s11880	POPTR_0006s11880 (11)	scaffold_6:9081887-9082422(+) (11)	NA	Q9LF92	F-box protein PP2-A15	AT3G53000.1	phloem protein 2-A15 	LOC_Os02g45320.1	"OsFBX58 - F-box domain containing protein, expressed"	Medtr5g010960.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15375.2.S1_a_at	A	A1TS	POPTR_0006s11880	POPTR_0006s11880 (10)	scaffold_6:9079838-9081837(+) (10)	NA	Q9LF92	F-box protein PP2-A15	AT3G53000.1	phloem protein 2-A15 	LOC_Os02g45320.1	"OsFBX58 - F-box domain containing protein, expressed"	Medtr5g010960.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153758.1.A1_at	A	A1TS	POPTR_0018s14950	POPTR_0018s14950 (11)	scaffold_18:14945893-14946320(-) (11)	NA	NA	NA	AT1G17830.1	Protein of unknown function (DUF789) 	LOC_Os10g35150.1	expressed protein	Medtr8g096450.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153759.1.A1_at	A	A1TS	POPTR_0015s13980	POPTR_0015s13980 (11)	scaffold_15:13736244-13736511(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153768.1.A1_at	A	A1TS	POPTR_0003s21370	POPTR_0003s21370 (11)	scaffold_3:19560394-19560834(-) (11)	NA	NA	NA	AT1G55265.1	"Protein of unknown function, DUF538 "	LOC_Os03g48626.1	expressed protein	Medtr4g133920.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153769.1.A1_at	A	A1TS	POPTR_0011s02640	POPTR_0011s02640 (11)	scaffold_11:2556489-2558855(+) (11)	NA	Q28G87	La-related protein 7	AT5G46250.1	RNA-binding protein 	LOC_Os01g55170.1	"la domain containing protein, expressed"	Medtr2g024800.1	RNA-binding region RNP-1 (RNA recognition motif); Winged helix repressor DNA-binding 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.153772.1.S1_at	A	A1TS	POPTR_0009s12300	POPTR_0009s12300 (11)	scaffold_9:10062188-10063346(+) (11)	POPTR_0004s16630 (6)	Q9SJT1	SUMO-activating enzyme subunit 2	AT2G21470.1	SUMO-activating enzyme 2 	LOC_Os07g39780.2	"SUMO-activating enzyme subunit 2, putative, expressed"	Medtr8g040410.1	SAE2 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.153777.1.A1_at	A	A1TS	POPTR_0006s03300	POPTR_0006s03300 (10)	scaffold_6:2099656-2100064(-) (11)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.153780.1.A1_at	A	A1TS	POPTR_0006s25510	POPTR_0006s25510 (11)	scaffold_6:23918590-23918909(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15379.1.S1_at	A	A1TS	POPTR_0018s09360	POPTR_0018s09360 (11)	scaffold_18:10234743-10235160(+) (11)	NA	NA	NA	AT4G29110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g36070.1	expressed protein	Medtr2g122250.1	Biotin-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153792.1.A1_at	A	A1TS	POPTR_0005s25870	POPTR_0005s25870 (11)	scaffold_5:24085101-24085635(+) (11)	NA	Q9FQ03	5'-3' exoribonuclease 3	AT1G75660.1	5'-3' exoribonuclease 3 	LOC_Os01g65220.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr4g079110.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.153793.1.S1_s_at	A	A1TS	POPTR_0018s03920	POPTR_0018s03920 (11)	scaffold_18:3342982-3343641(-) (11)	NA	NA	NA	AT4G31340.1	myosin heavy chain-related 	LOC_Os08g40790.1	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153818.1.A1_s_at	A	A1TS	POPTR_0008s12920	POPTR_0008s12920 (11)	scaffold_8:8403856-8404252(+) (11)	NA	Q54R62	Uridine-cytidine kinase C	AT2G01460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g21110.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.153825.1.A1_at	A	A1TS	POPTR_0630s00200	POPTR_0630s00200 (11)	scaffold_3:8401562-8402005(-) (11)//scaffold_630:13175-13618(-) (11)	POPTR_0003s06860 (8)	NA	NA	AT1G72430.1	SAUR-like auxin-responsive protein family  	LOC_Os08g35110.1	"OsSAUR33 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g025960.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153842.1.A1_at	A	A1TS	POPTR_0017s00330	POPTR_0017s00330 (10)	scaffold_17:91528-91561(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr3g151520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153842.1.A1_s_at	A	A1TS	POPTR_0017s00330	POPTR_0017s00330 (11)	scaffold_17:91507-91841(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g151520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153843.1.A1_at	A	A2TS	POPTR_0002s18290	POPTR_0002s18290 (11)//POPTR_0002s18310 (10)	scaffold_2:14259224-14260189(-) (11)//scaffold_2:14273901-14274866(-) (10)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.3	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.153847.1.A1_at	A	A1TS	POPTR_0012s13150	POPTR_0012s13150 (11)	scaffold_12:13431872-13432915(+) (11)	NA	Q67ZM4	Actin-depolymerizing factor 7	AT4G25590.1	actin depolymerizing factor 7 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr1g127180.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.153853.1.S1_a_at	A	A1TS	POPTR_0005s03520	POPTR_0005s03520 (11)	scaffold_5:2367315-2367465(-) (11)	NA	Q6NYY9	Transmembrane protein 49	AT4G14950.1	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153857.1.A1_at	A	A1TS	POPTR_0001s00700	POPTR_0001s00700 (11)	scaffold_1:579799-580962(+) (11)	NA	Q66GP9	Nitric oxide synthase 1	AT3G47450.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g01440.1	"nitric oxide synthase 1, putative, expressed"	Medtr2g071140.1	"Nitric oxide synthase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153858.1.A1_at	A	A1TS	POPTR_0009s10570	POPTR_0009s10570 (11)	scaffold_9:9041794-9042444(-) (11)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153869.1.A1_at	A	A1TS	POPTR_0001s24190	POPTR_0001s24190 (11)	scaffold_1:23533362-23533837(-) (11)	NA	NA	NA	AT2G28690.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.1	expressed protein	Medtr4g079030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153871.1.A1_at	A	A1TS	POPTR_0008s09510	POPTR_0008s09510 (11)	scaffold_8:5889654-5889989(+) (11)	NA	Q9ZQ89	Ureide permease 2	AT2G03530.2	ureide permease 2 	LOC_Os12g31850.4	"ureide permease, putative, expressed"	Medtr5g047390.1	Fatty acid elongase 3-ketoacyl-CoA synthase 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153878.1.A1_at	A	A1TS	POPTR_0015s12190	POPTR_0015s12190 (11)	scaffold_15:12562314-12563345(-) (11)	NA	P22302	"Superoxide dismutase [Fe], chloroplastic (Fragment)"	AT5G51100.1	Fe superoxide dismutase 2 	LOC_Os06g02500.1	"superoxide dismutase, chloroplast, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
PtpAffx.153891.1.A1_at	A	A1TS	POPTR_0017s02180	POPTR_0017s02180 (11)	scaffold_17:1605884-1606189(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153892.1.A1_at	A	A1TS	POPTR_0012s05820	POPTR_0012s05820 (11)	scaffold_12:5641821-5642440(+) (11)	NA	Q8GW64	"Peptidyl-tRNA hydrolase, chloroplastic"	AT1G18440.1	Peptidyl-tRNA hydrolase family protein 	LOC_Os01g49900.1	"peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed"	Medtr4g158480.1	Peptidyl-tRNA hydrolase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004045|aminoacyl-tRNA hydrolase activity	NA
PtpAffx.153915.1.A1_at	A	A1TS	POPTR_0005s16440	POPTR_0005s16440 (11)	scaffold_5:13184592-13184959(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153917.1.A1_at	A	A1TS	POPTR_0001s15650	POPTR_0001s15650 (11)	scaffold_1:12480202-12482361(+) (11)	NA	O34990	Formyltetrahydrofolate deformylase	AT5G47435.1	"formyltetrahydrofolate deformylase, putative "	LOC_Os03g01222.3	"formyl transferase, putative, expressed"	Medtr7g014920.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.153919.1.A1_s_at	A	A1TS	POPTR_0002s08410	POPTR_0002s08410 (11)	scaffold_2:5861496-5861652(+) (11)	NA	Q02060	"Photosystem II 22 kDa protein, chloroplastic"	AT1G44575.1	Chlorophyll A-B binding family protein 	LOC_Os01g64960.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr3g100820.1	Chlorophyll A-B binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153929.1.A1_at	A	A1TS	POPTR_0002s24980	POPTR_0002s24980 (11)	scaffold_2:22166430-22166841(-) (11)	NA	Q9SRT3	Probable xyloglucan glycosyltransferase 6	AT3G07330.1	Cellulose-synthase-like C6 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr8g012660.1	"Glycosyl transferase, family 2; Inorganic pyrophosphatase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153934.1.A1_at	A	A1TS	POPTR_0016s05450	POPTR_0016s05450 (11)	scaffold_16:3377689-3378103(-) (11)	NA	Q64520	Guanylate kinase	AT3G57550.2	guanylate kinase 	LOC_Os12g33100.1	"guanylate kinase, putative, expressed"	Medtr7g110630.2	Guanylate kinase/L-type calcium channel region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153960.1.A1_s_at	A	A1TS	POPTR_0015s06930	POPTR_0015s06930 (11)	scaffold_15:7957516-7958994(-) (11)	NA	P09394	Glycerophosphoryl diester phosphodiesterase	AT1G74210.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os01g55780.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr3g076710.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.153966.1.A1_at	A	A1TS	POPTR_0019s07980	POPTR_0019s07980 (10)	scaffold_19:9285204-9285591(+) (10)	NA	NA	NA	AT1G65320.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os01g69090.1	"CBS domain-containing protein, putative, expressed"	Medtr7g089400.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153966.2.A1_at	A	A1TS	POPTR_0013s08520	POPTR_0013s08520 (11)	scaffold_13:7737069-7737447(-) (11)	NA	NA	NA	AT1G65320.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os01g69090.1	"CBS domain-containing protein, putative, expressed"	Medtr7g089400.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153974.1.A1_a_at	A	A1TS	POPTR_0001s16880	POPTR_0001s16880 (11)	scaffold_1:13679679-13680263(+) (11)	NA	NA	NA	AT1G54150.1	E3 Ubiquitin ligase family protein 	LOC_Os03g08000.1	expressed protein	Medtr8g025010.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153977.1.A1_at	A	A1MS	POPTR_0002s04220	POPTR_0002s04220 (10)	scaffold_2:2644976-2645485(-) (11)	NA	Q9ZP54	Poly [ADP-ribose] polymerase 1	AT2G31320.1	poly(ADP-ribose) polymerase 2 	LOC_Os07g23110.1	"poly synthetase 1, putative, expressed"	Medtr4g069780.1	BRCT 	GO:0006471|protein amino acid ADP-ribosylation||GO:0044260|cellular macromolecule metabolic process	GO:0003677|DNA binding||GO:0003950|NAD+ ADP-ribosyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.153991.1.A1_at	A	A1TS	POPTR_0016s07140	POPTR_0016s07140 (11)	scaffold_16:4985397-4986940(-) (11)	NA	NA	NA	AT3G09180.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g15850.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153993.1.A1_at	A	A1MS	POPTR_0019s13570	POPTR_0019s13570 (11)	scaffold_19:14471748-14472007(-) (11)	NA	P53603	Formimidoyltransferase-cyclodeaminase	AT2G20830.1	transferases;folic acid binding 	LOC_Os03g38540.1	"folic acid binding protein, putative, expressed"	Medtr8g102530.1	Formiminotransferase 	GO:0008152|metabolic process	GO:0005542|folic acid binding||GO:0016740|transferase activity	NA
PtpAffx.153996.1.A1_s_at	A	A1TS	POPTR_0005s09230	POPTR_0005s09230 (11)	scaffold_5:6447575-6447912(-) (11)	NA	Q9FYE2	Protein PHYTOCHROME KINASE SUBSTRATE 4	AT5G04190.1	phytochrome kinase substrate 4 	LOC_Os01g15990.1	expressed protein	Medtr7g105020.1	"phytochrome kinase substrate 1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1540.1.S1_x_at	A	A1TS	POPTR_0016s02050	POPTR_0016s02050 (10)	scaffold_16:978275-979443(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154011.1.A1_at	A	A1TS	POPTR_0001s34240	POPTR_0001s34240 (10)	scaffold_1:32379082-32379260(+) (10)	NA	Q9LK31	Kelch repeat-containing protein At3g27220	AT3G27220.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g41020.1	"kelch repeat protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154026.1.A1_at	A	A1TS	POPTR_0008s03910	POPTR_0008s03910 (11)	scaffold_8:2154284-2154641(+) (11)	NA	Q88C93	Phosphomannomutase/phosphoglucomutase	AT5G17530.2	phosphoglucosamine mutase family protein 	LOC_Os07g26610.1	"phosphoglucomutase, putative, expressed"	Medtr1g120920.1	Phosphoglucosamine mutase 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.154035.1.A1_at	A	A1TS	POPTR_0011s04330	POPTR_0011s04330 (10)	scaffold_11:4336605-4337287(+) (10)	NA	Q9NYA1	Sphingosine kinase 1	AT4G21540.1	sphingosine kinase 1 	LOC_Os01g57350.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.154068.1.A1_at	A	A1TS	POPTR_0007s07680	POPTR_0007s07680 (10)	scaffold_7:6051206-6051510(+) (10)	NA	Q43082	"Porphobilinogen deaminase, chloroplastic"	AT5G08280.1	hydroxymethylbilane synthase 	LOC_Os02g07230.1	"porphobilinogen deaminase, chloroplast precursor, putative, expressed"	Medtr4g104170.1	Porphobilinogen deaminase 	GO:0033014|tetrapyrrole biosynthetic process	GO:0004418|hydroxymethylbilane synthase activity	NA
PtpAffx.154077.1.A1_at	A	A1TS	POPTR_0001s41530	POPTR_0001s41530 (11)	scaffold_1:41138576-41139393(-) (11)	NA	P82869	"Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic"	AT3G15520.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g37830.2	"peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.154098.1.A1_at	A	A1TS	POPTR_0005s01810	POPTR_0005s01810 (11)	scaffold_107:16189-16375(+) (11)//scaffold_107:17132-22838(+) (11)//scaffold_107:34686-44738(+) (11)//scaffold_5:1200768-1200947(+) (11)//scaffold_5:1217027-1217206(+) (11)//scaffold_5:1220390-1220569(+) (11)	NA	Q9ZR08	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	AT4G03230.1	S-locus lectin protein kinase family protein 	LOC_Os11g45540.1	"TKL_IRAK_DUF26-lh.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr2g011350.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154101.1.A1_at	A	A1TS	POPTR_0010s21720	POPTR_0010s21720 (11)	scaffold_10:18886133-18886672(-) (11)	NA	Q9M3B9	ABC transporter B family member 20	AT3G55320.1	P-glycoprotein  20 	LOC_Os01g74470.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.154120.1.A1_at	A	A1TS	POPTR_0010s13150	POPTR_0010s13150 (11)	scaffold_10:13027367-13027851(-) (11)	NA	NA	NA	AT1G68390.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os04g20420.1	"DNA binding protein, putative, expressed"	Medtr1g140570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.154123.1.A1_at	A	A1TS	POPTR_0002s19170	POPTR_0002s19170 (10)	scaffold_2:15089674-15090051(-) (10)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154127.1.A1_at	A	A1TA	POPTR_0001s01980	POPTR_0001s01980 (9)	scaffold_1:1439857-1440035(+) (9)	NA	NA	NA	AT1G32230.2	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154132.1.A1_at	A	A1TS	POPTR_0013s05710	POPTR_0013s05710 (11)	scaffold_13:4108228-4108616(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154149.1.A1_at	A	A1TS	POPTR_0001s04650	POPTR_0001s04650 (11)	scaffold_1:3616905-3617329(+) (11)	NA	P13240	Disease resistance response protein 206	AT1G58170.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	Medtr7g076490.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154153.2.A1_s_at	A	A1TS	POPTR_0008s09020	POPTR_0008s09020 (11)	scaffold_8:5595187-5597096(+) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G26690.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.154166.1.A1_at	A	A1TS	POPTR_0006s06470	POPTR_0006s06470 (9)	scaffold_6:4615271-4615712(-) (9)	NA	NA	NA	AT3G53270.5	"Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein "	LOC_Os10g35130.1	expressed protein	Medtr8g121380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154167.1.A1_at	A	A1TS	POPTR_0010s13550	POPTR_0010s13550 (9)	scaffold_10:13374655-13374969(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154171.1.A1_at	A	A1TS	POPTR_0011s14940	POPTR_0011s14940 (11)	scaffold_11:17164306-17164847(-) (11)	NA	NA	NA	AT3G51500.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g10010.2	expressed protein	Medtr5g024970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15418.1.S1_at	A	A1TS	POPTR_0014s13630	POPTR_0014s13630 (11)	scaffold_14:10002030-10005533(+) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT3G02070.1	Cysteine proteinases superfamily protein 	LOC_Os04g32970.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154196.1.A1_at	A	A1TS	POPTR_0011s16790	POPTR_0011s16790 (11)	scaffold_11:18553218-18553704(-) (11)	NA	O65583	Uridine kinase-like protein 4	AT4G26510.2	uridine kinase-like 4 	LOC_Os02g17320.2	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr5g104300.1	Phosphoribulokinase/uridine kinase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154199.1.S1_at	A	A1TS	POPTR_0011s16770	POPTR_0011s16770 (11)	scaffold_11:18541872-18542751(-) (11)	NA	P38166	Protein transport protein SFT2	AT5G56020.1	Got1/Sft2-like vescicle transport protein family 	LOC_Os06g19620.1	"SFT2, putative, expressed"	Medtr3g080130.1	SFT2-like 	GO:0016192|vesicle-mediated transport	NA	NA
PtpAffx.154204.1.A1_at	A	A1TS	POPTR_0010s22390	POPTR_0010s22390 (11)	scaffold_10:19343459-19343708(+) (11)	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT3G54760.2	dentin sialophosphoprotein-related 	LOC_Os05g38810.1	"PWWP domain containing protein, expressed"	Medtr1g086970.1	PWWP; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154239.1.S1_at	A	A1TS	POPTR_0001s25520	POPTR_0001s25520 (10)	scaffold_1:24606453-24606923(+) (10)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT1G07350.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g15890.2	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.154303.1.S1_s_at	A	A1TS	POPTR_0003s03330	POPTR_0003s03330 (10)	scaffold_3:3709174-3709528(-) (10)	NA	O23553	"Beta-amylase 3, chloroplastic"	AT4G17090.1	chloroplast beta-amylase 	LOC_Os10g41550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.154317.1.A1_at	A	A1MS	POPTR_0014s03930	POPTR_0014s03930 (11)	scaffold_14:3137297-3137388(+) (11)	NA	P0C7Q8	Protein DA1	AT1G19270.1	DA1 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.154317.1.A1_s_at	A	A1TS	POPTR_0014s03930	POPTR_0014s03930 (11)	scaffold_14:3136186-3137256(+) (11)	NA	P0C7Q8	Protein DA1	AT1G19270.1	DA1 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.154326.1.S1_s_at	A	A1TS	POPTR_0010s10580	POPTR_0010s10580 (11)	scaffold_10:11077944-11079263(+) (11)	NA	NA	NA	AT1G24040.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os04g39140.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr5g036340.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.15434.1.A1_s_at	A	A2TS	POPTR_0014s06820	POPTR_0014s06820 (11)//POPTR_0014s06790 (10)	scaffold_14:5127500-5127550(+) (10)//scaffold_14:5142463-5142528(+) (11)	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	AC233070_7.1	Cytochrome P450 AC233070.4 33530-28470 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.15434.2.A1_at	A	A1MS	POPTR_0014s06820	POPTR_0014s06820 (11)	scaffold_14:5142271-5142762(+) (11)	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	AC233070_7.1	Cytochrome P450 AC233070.4 33530-28470 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.15434.3.A1_a_at	A	A2MS	POPTR_0009s14770	POPTR_0014s06820 (10)//POPTR_0009s14770 (10)	scaffold_14:5142326-5142359(+) (10)//scaffold_206:16816-16849(+) (10)//scaffold_7:315707-315740(-) (10)//scaffold_9:11506516-11506549(+) (10)	POPTR_0014s06790 (8)	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	Medtr8g151050.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15434.3.A1_s_at	A	A2TS	POPTR_0014s06790	POPTR_0014s06820 (11)//POPTR_0014s06790 (11)	scaffold_14:5127059-5127439(+) (11)//scaffold_14:5142008-5142402(+) (11)	POPTR_0009s14770 (8)	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	AC233070_7.1	Cytochrome P450 AC233070.4 33530-28470 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.154396.1.S1_at	A	A1TS	POPTR_0001s07010	POPTR_0001s07010 (9)	scaffold_1:5352307-5352505(+) (9)	NA	Q7KWN2	Probable cytochrome P450 525A1	AT1G31800.1	"cytochrome P450, family 97, subfamily A, polypeptide 3 "	LOC_Os07g45000.1	"cytochrome P450, putative, expressed"	Medtr4g032760.2	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154411.1.S1_s_at	A	A1TS	POPTR_0015s05760	POPTR_0015s05760 (11)	scaffold_15:6117145-6117495(-) (11)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g49830.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.15442.1.A1_a_at	A	A1TS	POPTR_0011s10740	POPTR_0011s10740 (11)	scaffold_11:13317770-13318220(-) (11)	NA	NA	NA	AT3G14850.2	TRICHOME BIREFRINGENCE-LIKE 41 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g064330.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154422.1.S1_at	A	A1TS	POPTR_0002s00760	POPTR_0002s00760 (11)	scaffold_2:347573-347894(+) (11)	POPTR_0005s27680 (6)	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os02g13560.4	"transporter family protein, putative, expressed"	Medtr3g159920.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.154430.1.S1_at	A	A1TS	POPTR_0007s02740	POPTR_0007s02740 (10)	scaffold_421:7002-7497(-) (10)//scaffold_7:1594447-1594944(-) (11)	POPTR_0421s00210 (8)	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os03g16960.1	"cysteine-rich repeat secretory protein 55 precursor, putative, expressed"	Medtr2g103510.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154433.1.S1_s_at	A	A2TS	POPTR_0001s24620	POPTR_0009s03590 (11)//POPTR_0001s24620 (11)	scaffold_1:23875932-23876972(-) (11)//scaffold_9:4208870-4209918(-) (11)	NA	Q9LQN6	Probable protein phosphatase 2C 4	AT1G07630.1	pol-like 5 	LOC_Os03g60650.1	"protein phosphatase 2C, putative, expressed"	Medtr8g102940.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154444.1.S1_s_at	A	A1TS	POPTR_0001s27110	POPTR_0001s27110 (11)	scaffold_1:26052811-26053578(-) (11)	NA	NA	NA	AT3G08030.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154446.1.S1_s_at	A	A1TS	POPTR_0008s04590	POPTR_0008s04590 (11)	scaffold_8:2616051-2617101(+) (11)	NA	Q9ZUU1	"Probable adenylate kinase 1, chloroplastic"	AT2G37250.1	adenosine kinase 	LOC_Os03g03820.1	"adenylate kinase, putative, expressed"	Medtr7g120720.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154457.1.S1_at	A	A1TS	POPTR_0002s02390	POPTR_0002s02390 (10)	scaffold_2:1353549-1354868(+) (10)	NA	P48583	ER lumen protein retaining receptor	AT1G75760.1	ER lumen protein retaining receptor family protein 	LOC_Os08g43470.1	"ER lumen protein retaining receptor, putative, expressed"	Medtr3g156420.1	ER lumen protein retaining receptor; Orn/DAP/Arg decarboxylase 2 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
PtpAffx.15446.1.A1_at	A	A1TS	POPTR_0005s05650	POPTR_0005s05650 (11)	scaffold_5:3715293-3715484(-) (11)	NA	P16157	Ankyrin-1	AT3G04710.3	ankyrin repeat family protein 	LOC_Os05g01310.2	"ankyrin repeat family protein, putative, expressed"	Medtr5g046490.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154470.1.S1_at	A	A1TS	POPTR_0011s14750	POPTR_0011s14750 (10)	scaffold_11:17032596-17033129(+) (10)	NA	A3KPF8	"Pentatricopeptide repeat-containing protein At1g79080, chloroplastic"	AT1G79080.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g35750.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g093590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15449.1.S1_at	A	A1TS	POPTR_0010s14950	POPTR_0010s14950 (10)	scaffold_10:14393273-14393589(-) (10)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.154504.1.S1_at	A	A1TS	POPTR_0008s01340	POPTR_0008s01340 (11)	scaffold_8:658730-659250(+) (11)	NA	P31213	3-oxo-5-alpha-steroid 4-dehydrogenase 2	AT5G16010.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os07g06800.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr6g041190.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.154539.1.S1_s_at	A	A1TS	POPTR_0016s08040	POPTR_0016s08040 (11)	scaffold_16:5856045-5856376(+) (11)	NA	NA	NA	AT3G52710.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g127500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154542.1.S1_s_at	A	A1TS	POPTR_0010s18110	POPTR_0010s18110 (11)	scaffold_10:16465213-16465520(-) (11)	NA	Q9LTW0	ALA-interacting subunit 1	AT3G12740.1	ALA-interacting subunit 1 	LOC_Os06g45430.1	"cell cycle control protein, putative, expressed"	Medtr2g122470.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.154543.1.A1_a_at	A	A1TS	POPTR_0004s16130	POPTR_0004s16130 (9)	scaffold_4:16568331-16568633(-) (9)	NA	P54654	Adenylyl cyclase-associated protein	AT4G34490.1	cyclase associated protein 1 	LOC_Os03g51250.1	"adenylyl cyclase-associated protein, putative, expressed"	Medtr4g095480.1	Cyclase-associated protein; 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
PtpAffx.154549.1.A1_at	A	A1TS	POPTR_0001s11890	POPTR_0001s11890 (10)	scaffold_1:9214307-9215058(-) (10)	NA	NA	NA	AT2G02370.2	SNARE associated Golgi protein family 	LOC_Os03g25750.1	"SNARE associated Golgi protein, putative, expressed"	Medtr2g034030.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154573.1.A1_at	A	A1TS	POPTR_0007s07860	POPTR_0007s07860 (11)	scaffold_7:6294863-6295391(-) (11)	NA	Q9LIH7	Probable S-acyltransferase At3g18620	AT3G18620.1	DHHC-type zinc finger family protein 	LOC_Os06g20400.5	"DHHC zinc finger domain containing protein, expressed"	Medtr4g101410.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.154587.1.S1_s_at	A	A1TS	POPTR_0005s20450	POPTR_0005s20450 (11)	scaffold_5:19499323-19501006(+) (11)	NA	Q03520	Tetrachloro-P-hydroquinone reductive dehalogenase	AT1G77290.2	Glutathione S-transferase family protein 	LOC_Os04g35560.2	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154622.1.S1_at	A	A1TS	POPTR_0010s00550	POPTR_0010s00550 (11)	scaffold_10:305461-306329(+) (11)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT1G48280.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os08g03560.2	"chloroplast unusual positioning protein, putative, expressed"	Medtr8g133820.1	"hydroxyproline-rich glycoprotein family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154638.1.S1_s_at	A	A2TS	POPTR_0012s10770	POPTR_0015s11640 (11)//POPTR_0012s10770 (11)	scaffold_12:11456359-11456631(-) (11)//scaffold_15:12189397-12189669(-) (11)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
PtpAffx.154647.1.S1_at	A	A1TS	POPTR_0015s12090	POPTR_0015s12090 (9)	scaffold_15:12505967-12506503(-) (9)	NA	B2V855	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT5G07360.1	Amidase family protein 	LOC_Os11g33090.1	"amidase, putative, expressed"	Medtr4g145040.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.154690.1.S1_a_at	A	A1TS	POPTR_0009s11730	POPTR_0009s11730 (9)	scaffold_9:9684909-9685137(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr4g095320.1	"suspensor-specific protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154695.1.S1_at	A	A1TS	POPTR_0008s13490	POPTR_0008s13490 (10)	scaffold_8:8876200-8877346(+) (10)	NA	Q940D0	Two-component response regulator ARR1	AT3G16857.1	response regulator 1 	LOC_Os03g12350.4	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.154722.1.S1_s_at	A	A1TS	POPTR_0012s07670	POPTR_0012s07670 (11)	scaffold_12:8584917-8585331(-) (11)	NA	Q9STS3	Anaphase-promoting complex subunit 8	AT3G48150.1	anaphase-promoting complex subunit 8 	LOC_Os02g43920.1	"cell division cycle protein 23, putative, expressed"	Medtr8g025270.1	Cdc23 	GO:0030071|regulation of mitotic metaphase/anaphase transition	NA	GO:0005680|anaphase-promoting complex
PtpAffx.154735.1.S1_at	A	A1TS	POPTR_0010s22200	POPTR_0010s22200 (11)	scaffold_10:19185173-19185503(-) (11)	NA	A1JLU9	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	AT2G39290.1	phosphatidylglycerolphosphate synthase 1 	LOC_Os03g17520.1	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr1g146580.1	CDP-alcohol phosphatidyltransferase 	GO:0008654|phospholipid biosynthetic process	"GO:0016780|""phosphotransferase activity, for other substituted phosphate groups"""	GO:0016020|membrane
PtpAffx.154747.1.S1_at	A	A1TS	POPTR_0014s17020	POPTR_0014s17020 (11)	scaffold_14:13206130-13206645(-) (11)	NA	NA	NA	AT5G48310.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1). 	LOC_Os02g52280.1	expressed protein	Medtr5g106300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154748.1.S1_at	A	A1TS	POPTR_0009s09870	POPTR_0009s09870 (9)	scaffold_9:8645557-8645738(+) (9)	NA	P31657	Probable cinnamyl alcohol dehydrogenase	AT3G19450.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os02g09490.1	"dehydrogenase, putative, expressed"	Medtr5g032800.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.154758.1.S1_at	A	A1TS	POPTR_0011s00760	POPTR_0011s00760 (11)	scaffold_11:378614-379290(+) (11)	NA	Q5KFA4	Acyl-protein thioesterase 1	AT4G22300.1	carboxylesterases 	LOC_Os04g57370.1	"acyl-protein thioesterase, putative, expressed"	Medtr8g147580.1	Phospholipase/Carboxylesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.154761.1.S1_at	A	A1TS	POPTR_0002s14500	POPTR_0002s14500 (11)	scaffold_2:10782481-10782968(-) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44360.1	"scarecrow transcription factor family protein, putative, expressed"	Medtr4g029350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154769.1.S1_at	A	A1TS	POPTR_0006s09390	POPTR_0006s09390 (11)	scaffold_6:6898227-6900918(-) (11)	NA	Q9ZUI6	AP-1 complex subunit gamma-2	AT1G60070.1	"Adaptor protein complex AP-1, gamma subunit "	LOC_Os06g07090.2	"AP-1 complex subunit gamma-1, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.154775.1.S1_s_at	A	A1TS	POPTR_0006s10520	POPTR_0006s10520 (11)	scaffold_6:7885152-7886185(-) (11)	NA	Q9SCT4	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2	AT3G51740.1	inflorescence meristem receptor-like kinase 2 	LOC_Os03g18630.1	"receptor-like kinase RHG1, putative, expressed"	Medtr4g011440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.15478.1.A1_s_at	A	A1TS	POPTR_0010s14390	POPTR_0010s14390 (10)	scaffold_10:14024652-14025218(+) (10)	NA	Q42679	S-adenosylmethionine decarboxylase proenzyme	AT3G25570.2	Adenosylmethionine decarboxylase family protein 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.154812.1.S1_s_at	A	A1TS	POPTR_0009s16210	POPTR_0009s16210 (11)	scaffold_9:12383432-12384181(-) (11)	NA	NA	NA	AT5G22340.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g20640.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154816.1.S1_at	A	A1TS	POPTR_0008s03980	POPTR_0008s03980 (10)	scaffold_8:2194918-2195262(+) (10)	NA	Q99685	Monoglyceride lipase	AT5G19290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g21560.1	"esterase/lipase/thioesterase family protein, putative, expressed"	Medtr1g120940.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15485.1.S1_a_at	A	A1TS	POPTR_0001s02910	POPTR_0001s02910 (11)	scaffold_1:2299793-2300093(-) (11)	NA	Q6LA43	Two-component response regulator-like APRR2	AT4G18020.5	CheY-like two-component responsive regulator family protein 	LOC_Os01g13740.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr5g014220.2	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.154852.1.S1_at	A	A1TS	POPTR_0014s06190	POPTR_0014s06190 (10)	scaffold_14:4709152-4709621(-) (10)	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os10g40740.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.154852.2.S1_a_at	A	A2TS	POPTR_0002s14430	POPTR_0002s14430 (11)//POPTR_0014s06190 (11)	scaffold_14:4709685-4709817(-) (11)//scaffold_2:10697218-10697350(+) (11)	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.154852.2.S1_at	A	A1TS	POPTR_0002s14430	POPTR_0002s14430 (11)	scaffold_2:10697053-10697600(+) (11)	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.154868.1.S1_s_at	A	A1TS	POPTR_0007s11920	POPTR_0007s11920 (11)	scaffold_7:12267518-12268812(-) (11)	NA	P49082	Guanine nucleotide-binding protein alpha-1 subunit	AT2G23460.1	extra-large G-protein 1 	LOC_Os12g40190.1	"G-protein alpha subunit, putative, expressed"	Medtr5g018540.2	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.154872.1.S1_at	A	A1TS	POPTR_0003s03410	POPTR_0003s03410 (10)	scaffold_3:3826721-3827236(-) (10)//scaffold_599:8686-9201(-) (10)	NA	NA	NA	AT1G32740.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os02g46220.1	expressed protein	Medtr5g013870.1	"F6N18.12, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154880.1.S1_at	A	A1TS	POPTR_0004s21720	POPTR_0004s21720 (11)	scaffold_4:20761686-20762344(-) (11)	NA	NA	NA	AT4G38225.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g03670.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15490.1.S1_s_at	A	A1TS	POPTR_0019s14810	POPTR_0019s14810 (11)	scaffold_19:15485897-15486409(+) (11)	NA	Q9C562	CBL-interacting serine/threonine-protein kinase 10	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g145620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154914.1.S1_s_at	A	A1TS	POPTR_0001s20710	POPTR_0001s20710 (11)	scaffold_1:18820536-18821636(+) (11)	POPTR_0003s02960 (7)	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT3G13690.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	Medtr2g121520.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154919.1.S1_at	A	A1TS	POPTR_0006s00570	POPTR_0006s00570 (11)	scaffold_6:301170-301487(+) (11)	POPTR_0016s00660 (7)	Q0DCT8	Protein kinase G11A	AT5G47750.1	D6 protein kinase like 2 	LOC_Os08g38320.3	"AGC_PVPK_like_kin82y.14 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154919.2.S1_at	A	A1TS	POPTR_0016s00660	POPTR_0016s00660 (11)	scaffold_16:226390-226775(+) (11)	NA	Q0DCT8	Protein kinase G11A	AT5G47750.1	D6 protein kinase like 2 	LOC_Os08g38320.3	"AGC_PVPK_like_kin82y.14 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15492.1.S1_at	A	A1TS	POPTR_0005s28000	POPTR_0005s28000 (10)	scaffold_5:25400518-25400924(+) (10)	NA	P14278	"Chlorophyll a-b binding protein 4, chloroplastic"	AT1G76570.1	Chlorophyll A-B binding family protein 	LOC_Os09g12540.1	"chlorophyll A-B binding protein, putative, expressed"	CU179634_22.1	Chlorophyll A-B binding protein CU179634.6 82649-85163 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.154920.1.S1_s_at	A	A1TS	POPTR_0009s11860	POPTR_0009s11860 (11)	scaffold_9:9769987-9770272(-) (11)	NA	NA	NA	AT1G75180.3	Erythronate-4-phosphate dehydrogenase family protein 	LOC_Os03g56420.1	expressed protein	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154923.1.S1_s_at	A	A2TS	POPTR_0006s01230	POPTR_0006s01230 (11)//POPTR_0016s01500 (11)	scaffold_16:688074-688205(-) (11)//scaffold_6:682804-682935(+) (11)	NA	O74503	Upstream activation factor subunit spp27	AT4G22360.1	SWIB complex BAF60b domain-containing protein 	LOC_Os08g39310.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr3g076380.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154927.1.S1_s_at	A	A1TS	POPTR_0017s04930	POPTR_0017s04930 (11)	scaffold_17:3788045-3788602(+) (11)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT2G30700.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 68 Blast hits to 67 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g38980.1	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154936.1.S1_at	A	A1TS	POPTR_0010s11710	POPTR_0010s11710 (11)	scaffold_10:11893595-11893921(-) (11)	NA	Q9ZU96	Ankyrin repeat-containing protein At2g01680	AT2G01680.1	Ankyrin repeat family protein 	LOC_Os02g50270.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr4g157130.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154961.1.S1_at	A	A1TS	POPTR_0009s00990	POPTR_0009s00990 (10)	scaffold_9:1099207-1101458(-) (10)	NA	Q8GYD1	Protein disulfide-isomerase 5-1	AT1G07960.1	PDI-like 5-1 	LOC_Os03g17860.1	"OsPDIL5-1  protein disulfide isomerase PDIL5-1, expressed"	Medtr2g110920.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.154968.1.S1_at	A	A1TS	POPTR_0015s14990	POPTR_0015s14990 (11)	scaffold_15:14368751-14368936(-) (11)//scaffold_2019:3431-3616(-) (11)	POPTR_2019s00200 (8)	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os03g20470.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.154968.1.S1_s_at	A	A1TS	POPTR_0015s14990	POPTR_0015s14990 (11)	scaffold_15:14368191-14368915(-) (11)	NA	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os03g20470.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.15499.1.S1_at	A	A1TS	POPTR_0006s24570	POPTR_0006s24570 (11)	scaffold_6:23160845-23161461(+) (11)	NA	O49954	"Glycine dehydrogenase [decarboxylating], mitochondrial"	AT4G33010.1	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155.1.S1_at	A	A1TS	POPTR_0015s11200	POPTR_0015s11200 (9)	scaffold_15:11841339-11842536(+) (10)	NA	Q7SYS6	Hydroxysteroid 11-beta-dehydrogenase 1-like protein B	AT5G50700.1	hydroxysteroid dehydrogenase 1 	LOC_Os12g27830.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.155.2.S1_a_at	A	A1TS	POPTR_0015s11200	POPTR_0015s11200 (11)	scaffold_15:11840376-11841258(+) (11)	NA	Q7SYS6	Hydroxysteroid 11-beta-dehydrogenase 1-like protein B	AT5G50700.1	hydroxysteroid dehydrogenase 1 	LOC_Os12g27830.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.15501.1.S1_s_at	A	A1TS	POPTR_0003s13080	POPTR_0003s13080 (10)	scaffold_3:13477793-13478123(-) (11)	NA	Q9SUS5	E3 ubiquitin-protein ligase RHA1B	AT1G63840.1	RING/U-box superfamily protein 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155030.1.S1_at	A	A1TS	POPTR_0010s20930	POPTR_0010s20930 (11)	scaffold_10:18348772-18349164(-) (11)	NA	NA	NA	AT2G39705.1	ROTUNDIFOLIA like 8 	LOC_Os03g16600.1	expressed protein	Medtr5g087640.1	DVL 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15505.1.S1_at	A	A1TS	POPTR_0011s14970	POPTR_0011s14970 (11)	scaffold_11:17185142-17185950(-) (11)	NA	O81635	Kinesin-4	AT5G65930.2	kinesin-like calmodulin-binding protein (ZWICHEL) 	LOC_Os04g57140.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g025080.1	"Band 4.1; Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4; Kinesin, motor region; Prismane-like "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	GO:0005856|cytoskeleton
PtpAffx.155053.1.S1_s_at	A	A1TS	POPTR_0002s06900	POPTR_0002s06900 (11)	scaffold_2:4659766-4660917(+) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155063.1.S1_s_at	A	A1TS	POPTR_0002s10920	POPTR_0002s10920 (11)	scaffold_2:7974903-7975923(+) (11)	NA	NA	NA	AT5G64460.8	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr3g127570.1	Phosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155137.1.S1_at	A	A1TS	POPTR_0014s02910	POPTR_0014s02910 (11)	scaffold_14:2403216-2403411(+) (11)	NA	Q9LJK2	Abscisic acid 8'-hydroxylase 4	AT3G19270.1	"cytochrome P450, family 707, subfamily A, polypeptide 4 "	LOC_Os09g28390.1	"cytochrome P450, putative, expressed"	Medtr1g024340.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.155150.1.S1_at	A	A1TS	POPTR_0003s14320	POPTR_0003s14320 (11)	scaffold_3:14418444-14418895(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01960.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155157.1.S1_at	A	A1TS	POPTR_0004s11490	POPTR_0004s11490 (10)	scaffold_4:10232090-10235533(+) (10)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT3G01100.1	hypothetical protein 1 	LOC_Os12g39320.1	"DUF221 domain containing protein, expressed"	Medtr6g013380.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.155166.1.S1_s_at	A	A2TS	POPTR_0006s04950	POPTR_0006s04950 (11)//POPTR_0016s05600 (11)	scaffold_16:3529515-3529774(-) (11)//scaffold_6:3456524-3456783(+) (11)	NA	NA	NA	AT2G41770.1	Protein of unknown function (DUF288) 	LOC_Os05g32500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155173.1.S1_at	A	A1TS	POPTR_0016s03690	POPTR_0016s03690 (11)	scaffold_16:2044323-2044762(-) (11)	NA	Q7T0Q5	Nucleolar protein 10	AT3G56990.1	embryo sac development arrest 7 	LOC_Os06g03780.1	"NUC153 domain containing protein, expressed"	Medtr2g095390.1	WD40-like; NUC153 	NA	NA	GO:0005634|nucleus
PtpAffx.155174.1.S1_at	A	A1TS	POPTR_0012s12810	POPTR_0012s12810 (9)	scaffold_12:13212994-13215909(+) (9)	NA	P74436	Uncharacterized transporter sll0355	AT3G02690.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g35140.1	"integral membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.15518.1.S1_a_at	A	A1TS	POPTR_0009s02130	POPTR_0009s02130 (11)	scaffold_9:2751545-2752822(-) (11)	NA	Q9C578	Probable RNA 3'-terminal phosphate cyclase-like protein	AT5G22100.1	RNA cyclase family protein 	LOC_Os03g61790.1	"RNA 3-terminal phosphate cyclase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15518.2.S1_at	A	A1TS	POPTR_0009s02130	POPTR_0009s02130 (11)	scaffold_9:2749869-2750783(-) (11)	NA	Q9C578	Probable RNA 3'-terminal phosphate cyclase-like protein	AT5G22100.1	RNA cyclase family protein 	LOC_Os03g61790.1	"RNA 3-terminal phosphate cyclase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15518.3.A1_a_at	A	A1TS	POPTR_0009s02130	POPTR_0009s02130 (11)	scaffold_9:2751379-2751524(-) (11)	NA	Q9C578	Probable RNA 3'-terminal phosphate cyclase-like protein	AT5G22100.1	RNA cyclase family protein 	LOC_Os03g61790.1	"RNA 3-terminal phosphate cyclase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155180.1.S1_at	A	A1TS	POPTR_0001s36320	POPTR_0001s36320 (10)	scaffold_1:34864689-34866078(+) (10)	NA	Q6GNY1	E3 ubiquitin-protein ligase mib1	AT3G01750.1	Ankyrin repeat family protein 	LOC_Os05g23320.2	expressed protein	Medtr3g103280.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155183.1.S1_at	A	A1MS	POPTR_0002s04670	POPTR_0002s04670 (10)	scaffold_2:2913451-2913808(-) (10)	NA	Q9AR19	Histone acetyltransferase GCN5	AT3G54610.1	histone acetyltransferase of the GNAT family 1 	LOC_Os10g28040.1	"histone acetyltransferase GCN5, putative, expressed"	Medtr8g074500.1	GCN5-related N-acetyltransferase; Bromodomain 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.155202.1.S1_s_at	A	A1TS	POPTR_0012s05250	POPTR_0012s05250 (11)	scaffold_12:4837885-4838829(+) (11)	POPTR_0015s03710 (6)	O95294	RasGAP-activating-like protein 1	AT3G18370.1	C2 domain-containing protein 	LOC_Os01g03820.1	"C2 domain containing protein, putative, expressed"	Medtr6g028380.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155226.1.S1_s_at	A	A1TS	POPTR_0015s01460	POPTR_0015s01460 (11)	scaffold_15:894204-894513(-) (11)	POPTR_0012s02350 (7)	Q84WF5	Probable VAMP-like protein At1g33475	AT5G52990.1	SNARE-like superfamily protein 	LOC_Os08g44430.2	"vesicle-associated membrane protein 727, putative, expressed"	Medtr3g123790.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155256.1.S1_at	A	A1TS	POPTR_0002s03360	POPTR_0002s03360 (11)	scaffold_2:2078513-2079256(+) (11)	NA	Q2RAC5	Cyclin-T1-3	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155274.1.S1_s_at	A	A1TS	POPTR_0004s15130	POPTR_0004s15130 (11)	scaffold_4:15798635-15799025(+) (11)	NA	Q8CBG9	RING finger protein 170	AT4G33940.1	RING/U-box superfamily protein 	LOC_Os03g62250.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g013260.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155289.1.S1_at	A	A1TS	POPTR_0006s03950	POPTR_0006s03950 (9)	scaffold_6:2680681-2680978(+) (9)	NA	O80366	Two-component response regulator ARR9	AT3G57040.1	response regulator 9 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g039500.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.155290.1.S1_at	A	A1TS	POPTR_0002s09450	POPTR_0002s09450 (11)	scaffold_2:6732979-6733453(-) (11)	NA	Q9SGZ5	Probable beta-D-xylosidase 7	AT1G78060.1	Glycosyl hydrolase family protein 	LOC_Os02g51620.1	"glycosyl hydrolase family 3 protein, putative, expressed"	CU651566_9.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal CU651566.9 51724-46198 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.155292.1.S1_at	A	A1TS	POPTR_0008s16250	POPTR_0008s16250 (11)	scaffold_8:10878431-10880146(-) (11)	POPTR_0010s08690 (6)	Q8R1R3	"StAR-related lipid transfer protein 7, mitochondrial"	AT4G14500.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os07g08760.1	"START domain containing protein, putative, expressed"	Medtr5g007180.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155293.1.S1_at	A	A2TS	POPTR_0012s00460	POPTR_0012s00460 (11)//POPTR_0012s00200 (10)	scaffold_12:1827-2311(+) (11)//scaffold_12:164278-164763(+) (11)	NA	Q9URX1	UNC93-like protein C922.05c	AT1G18010.1	Major facilitator superfamily protein 	LOC_Os04g01520.1	expressed protein	Medtr3g122110.1	"Protein of unknown function DUF895, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155300.1.S1_at	A	A1TS	POPTR_0007s13780	POPTR_0007s13780 (11)	scaffold_7:13825442-13826158(-) (11)	NA	Q8VYZ3	Probable pectinesterase 53	AT5G19730.1	Pectin lyase-like superfamily protein 	LOC_Os01g53990.1	"pectinesterase, putative, expressed"	Medtr4g160050.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.155308.1.S1_at	A	A1TS	POPTR_0009s08570	POPTR_0009s08570 (11)	scaffold_9:7803509-7804919(-) (11)	NA	Q93ZN9	"LL-diaminopimelate aminotransferase, chloroplastic"	AT4G33680.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g18810.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g122020.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.155333.1.S1_s_at	A	A2TS	POPTR_0004s04040	POPTR_0004s04050 (11)//POPTR_0004s04040 (11)	scaffold_4:2892066-2892447(+) (11)//scaffold_4:2909357-2909739(+) (11)	NA	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155348.1.S1_at	A	A1TS	POPTR_0010s19140	POPTR_0010s19140 (11)	scaffold_10:17137730-17137991(-) (11)	NA	NA	NA	AT2G40320.1	TRICHOME BIREFRINGENCE-LIKE 33 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr5g090760.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155350.1.S1_s_at	A	A1TS	POPTR_0005s18520	POPTR_0005s18520 (11)	scaffold_5:16757964-16758471(+) (11)	NA	P43297	Cysteine proteinase RD21a	AT1G47128.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.155352.1.S1_at	A	A1TS	POPTR_0025s00350	POPTR_0025s00350 (11)	scaffold_25:119742-120162(+) (11)	NA	Q9Y5A7	NEDD8 ultimate buster 1	AT2G12550.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os04g55150.2	"UBA/TS-N domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155365.1.S1_s_at	A	A1TS	POPTR_0008s02180	POPTR_0008s02180 (11)	scaffold_8:1042038-1042605(-) (11)	NA	NA	NA	AT3G54260.1	TRICHOME BIREFRINGENCE-LIKE 36 	LOC_Os03g18110.1	"proteins of unknown function domain containing protein, putative, expressed"	Medtr5g079650.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155371.1.S1_s_at	A	A1TS	POPTR_0015s08190	POPTR_0015s08190 (11)	scaffold_15:9447619-9447886(-) (11)	NA	Q9S795	"Betaine aldehyde dehydrogenase 1, chloroplastic"	AT1G74920.1	aldehyde dehydrogenase 10A8 	LOC_Os04g39020.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125020.1	"Betaine aldehyde dehydrogenase 1, chloroplast precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.155376.1.S1_at	A	A1TS	POPTR_0012s04630	POPTR_0012s04630 (11)	scaffold_12:3970355-3970785(+) (11)	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT3G18050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g37156.1	expressed protein	Medtr4g155370.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155384.1.A1_at	A	A1TS	POPTR_0001s00780	POPTR_0001s00780 (11)	scaffold_1:631500-634743(-) (11)	NA	Q8U4K7	2-phosphoglycerate kinase	AT5G61450.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g28260.6	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155411.1.A1_at	A	A1TA	POPTR_0010s09970	POPTR_0010s09970 (10)	scaffold_10:10560963-10561349(+) (10)	NA	Q9LUW0	"Lipoxygenase 5, chloroplastic"	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr1g132610.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.155435.1.A1_at	A	A1TS	POPTR_0010s17140	POPTR_0010s17140 (11)	scaffold_10:15867665-15868172(+) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155435.2.S1_at	A	A1TS	POPTR_0013s02100	POPTR_0013s02100 (11)	scaffold_13:1235161-1235679(-) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155448.1.A1_s_at	A	A1TS	POPTR_0014s11370	POPTR_0014s11370 (11)	scaffold_14:8465748-8466316(-) (11)	NA	Q93XK2	Stachyose synthase	AT4G01970.1	stachyose synthase 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr4g136550.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155513.1.A1_s_at	A	A1TS	POPTR_0004s06620	POPTR_0004s06620 (11)	scaffold_4:5312705-5313047(+) (11)	NA	NA	NA	AT2G31270.1	homolog of yeast CDT1 A 	LOC_Os04g10650.1	"CDT1A - Putative DNA replication initiation protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155525.1.A1_at	A	A1TS	POPTR_0008s09120	POPTR_0008s09120 (10)	scaffold_8:5647651-5648181(-) (10)	NA	Q9C533	Probable S-acyltransferase At1g69420	AT1G69420.1	DHHC-type zinc finger family protein 	LOC_Os03g11110.1	"zinc finger family protein, putative, expressed"	Medtr5g045820.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.155528.1.A1_at	A	A1TS	POPTR_0003s01530	POPTR_0003s01530 (11)	scaffold_3:1390735-1391635(+) (11)	NA	Q9LDX1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	LOC_Os12g09580.1	"leafbladeless1, putative, expressed"	Medtr2g007820.1	"Emr1, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155544.1.A1_at	A	A1TS	POPTR_0004s08390	POPTR_0004s08390 (11)	scaffold_4:6924052-6926871(+) (11)	NA	Q9YHB5	Condensin complex subunit 3	AT5G37630.1	ARM repeat superfamily protein 	LOC_Os06g14460.1	"chromosome condensation protein like, putative, expressed"	Medtr3g087440.1	"EMB2656 ; binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155545.1.A1_at	A	A1TS	POPTR_0006s00490	POPTR_0006s00490 (11)	scaffold_6:243308-243687(-) (11)	NA	Q5KS50	Coleoptile phototropism protein 1	AT5G47800.1	Phototropic-responsive NPH3 family protein 	LOC_Os09g09370.1	"BTBN18 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	AC233669_17.1	NPH3 AC233669.2 72476-75261 E EGN_Mt090430 200	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.155548.1.A1_at	A	A1TS	POPTR_0005s24690	POPTR_0005s24690 (10)	scaffold_5:23146686-23147065(+) (10)	NA	Q7XI08	Probable E3 ubiquitin-protein ligase XBOS34	AT3G23280.1	XB3 ortholog 5 in Arabidopsis thaliana 	LOC_Os07g26490.1	"ankyrin repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155558.1.A1_a_at	A	A1TS	POPTR_0011s12460	POPTR_0011s12460 (11)	scaffold_11:15204231-15204583(+) (11)	NA	Q556Z3	Trafficking protein particle complex subunit 10	AT5G54440.1	CLUB 	LOC_Os12g36760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155602.1.A1_a_at	A	A1TS	POPTR_0016s01490	POPTR_0016s01490 (11)	scaffold_16:681775-682321(+) (11)	POPTR_0006s01290 (7)	A7XDQ9	"Probable beta-1,3-galactosyltransferase 20"	AT4G21060.2	Galactosyltransferase family protein 	LOC_Os08g03670.1	"galactosyltransferase family protein, putative, expressed"	Medtr2g022300.1	"Glycosyl transferase, family 31; Arginase/agmatinase/formiminoglutamase; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.155607.1.A1_s_at	A	A1TS	POPTR_0905s00195	POPTR_0905s00195 (11)	scaffold_905:1384-1492(+) (11)	NA	NA	NA	AT5G35930.1	AMP-dependent synthetase and ligase family protein 	LOC_Os06g02160.4	"AMP-binding enzyme family protein, expressed"	Medtr8g150990.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like; Quinonprotein alcohol dehydrogenase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155629.1.S1_at	A	A1TS	POPTR_0012s03340	POPTR_0012s03340 (10)	scaffold_12:2650680-2652572(+) (10)	NA	Q14684	Ribosomal RNA processing protein 1 homolog B	AT5G20600.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). "	LOC_Os04g56350.1	"nucleolar protein,Nop52 containing protein, expressed"	Medtr8g147770.1	"Nucleolar, Nop52 "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	"GO:0030688|""preribosome, small subunit precursor"""
PtpAffx.155633.1.S1_at	A	A1TS	POPTR_0001s25260	POPTR_0001s25260 (9)	scaffold_1:24424568-24425015(-) (9)	NA	O04856	Serine/threonine-protein phosphatase PP1 isozyme 1	AT2G29400.1	type one protein phosphatase 1 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.155638.1.S1_at	A	A1TS	POPTR_0012s13470	POPTR_0012s13470 (10)	scaffold_12:13612678-13613500(+) (10)	NA	Q63055	ADP-ribosylation factor-related protein 1	AT5G52210.2	GTP-binding protein 1 	LOC_Os03g27450.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g035450.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.155642.1.S1_at	A	A1TS	POPTR_0005s09150	POPTR_0005s09150 (10)	scaffold_5:6396049-6396324(-) (10)	NA	P54697	Myosin-J heavy chain	AT3G19960.1	myosin 1 	LOC_Os10g34710.1	"myosin-2 heavy chain, non muscle, putative, expressed"	Medtr1g046530.1	"IQ calmodulin-binding region; Myosin head, motor region "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.155671.1.S1_at	A	A1TS	POPTR_0002s01140	POPTR_0002s01140 (11)	scaffold_2:609337-609912(-) (11)	NA	NA	NA	AT5G42330.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155671.2.A1_at	A	A1TA	POPTR_0002s01140	POPTR_0002s01140 (9)	scaffold_2:609526-609837(+) (10)	NA	NA	NA	AT5G42330.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155681.1.S1_a_at	A	A1MS	POPTR_0009s06610	POPTR_0009s06610 (11)	scaffold_9:6362432-6362630(-) (11)	NA	NA	NA	AT3G08490.1	"BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1); Has 161 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g11710.1	expressed protein	Medtr3g040230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155681.1.S1_at	A	A1TS	POPTR_0009s06610	POPTR_0009s06610 (11)	scaffold_9:6361424-6362391(-) (11)	NA	NA	NA	AT3G08490.1	"BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1); Has 161 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g11710.1	expressed protein	Medtr3g040230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155681.2.S1_at	A	A1MS	POPTR_0009s06610	POPTR_0009s06610 (11)	scaffold_9:6362152-6362426(-) (11)	NA	NA	NA	AT3G08490.1	"BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1); Has 161 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g11710.1	expressed protein	Medtr3g040230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155705.1.S1_s_at	A	A1TS	POPTR_0007s14070	POPTR_0007s14070 (11)	scaffold_7:13989626-13990023(-) (11)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.2	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr5g021870.1	"Glycoside hydrolase, family 5; YEATS "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.155706.1.S1_at	A	A1TS	POPTR_0008s15580	POPTR_0008s15580 (11)	scaffold_8:10349459-10349596(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.155720.1.S1_s_at	A	A1TS	POPTR_0008s12820	POPTR_0008s12820 (11)	scaffold_8:8315649-8316200(-) (11)	NA	NA	NA	AT1G70950.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr3g137120.2	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15575.1.S1_s_at	A	A1TS	POPTR_0014s18740	POPTR_0014s18740 (11)	scaffold_14:16109518-16109754(-) (11)	NA	Q86UA1	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155765.1.S1_s_at	A	A1TS	POPTR_0014s13600	POPTR_0014s13600 (11)	scaffold_14:9988835-9989023(-) (11)	NA	NA	NA	AT1G52140.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g70500.1	expressed protein	Medtr7g099480.1	"disease resistance gene, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155773.1.S1_s_at	A	A1TS	POPTR_0010s15150	POPTR_0010s15150 (10)	scaffold_10:14499366-14499913(-) (10)	NA	Q9LSP9	Chitinase-like protein 2	AT3G16920.1	chitinase-like protein 2 	LOC_Os09g32080.2	"CHIT13 - Chitinase family protein precursor, expressed"	Medtr2g038810.1	"Glycoside hydrolase, family 19 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
PtpAffx.155797.1.S1_at	A	A1TS	POPTR_0004s17500	POPTR_0004s17500 (11)	scaffold_4:17684610-17684994(+) (11)	NA	NA	NA	AT2G21180.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g14570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155868.1.S1_s_at	A	A1TS	POPTR_0006s14090	POPTR_0006s14090 (11)	scaffold_6:11398913-11399336(+) (11)	NA	Q84QC2	Ethylene-responsive transcription factor ERF017	AT1G19210.1	Integrase-type DNA-binding superfamily protein 	LOC_Os08g35240.1	AP2 domain containing protein	Medtr2g050000.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.155898.1.S1_at	A	A1TS	POPTR_0014s17170	POPTR_0014s17170 (10)	scaffold_14:13332942-13333524(+) (10)	NA	Q6INU7	Putative ferric-chelate reductase 1	AT3G07570.1	Cytochrome b561/ferric reductase transmembrane with DOMON related domain 	LOC_Os01g67030.1	"auxin-responsive protein, putative, expressed"	AC233651_15.1	DOMON; Cytochrome b561 / ferric reductase transmembrane AC233651.1 46198-48399 H EGN_Mt090430 200	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006548|histidine catabolic process	GO:0004500|dopamine beta-monooxygenase activity	NA
PtpAffx.155905.1.S1_at	A	A1TS	POPTR_0008s06610	POPTR_0008s06610 (10)	scaffold_8:3942308-3942756(-) (11)	NA	NA	NA	AT2G40000.1	ortholog of sugar beet HS1 PRO-1 2 	LOC_Os01g63690.1	"hs1, putative, expressed"	Medtr3g093280.1	"Hs1pro-1, C-terminal; Hs1pro-1, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155942.1.S1_at	A	A2TS	POPTR_0006s28810	POPTR_0006s28810 (11)//POPTR_0018s03560 (9)	scaffold_18:3087889-3088886(-) (9)//scaffold_6:26401877-26402882(-) (11)	NA	Q9SV21	Coatomer subunit beta-1	AT4G31480.2	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138720.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
PtpAffx.155946.1.S1_at	A	A1TS	POPTR_0006s09660	POPTR_0006s09660 (11)	scaffold_6:7100924-7101550(+) (10)	POPTR_0016s11740 (7)	Q9N2I9	Mitochondrial uncoupling protein 3	AT3G54110.1	plant uncoupling mitochondrial protein 1 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155976.1.S1_at	A	A1TS	POPTR_0001s35990	POPTR_0001s35990 (11)	scaffold_1:34450923-34451404(+) (11)	NA	P27879	18.1 kDa class I heat shock protein (Fragment)	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g022470.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155977.1.S1_at	A	A1TS	POPTR_0191s00210	POPTR_0191s00210 (10)	scaffold_191:2202-5469(-) (10)	NA	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr5g082640.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.156067.1.A1_s_at	A	A1TS	POPTR_0014s07350	POPTR_0014s07350 (11)	scaffold_14:5542991-5543681(+) (11)	NA	Q5R831	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT1G12600.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os03g02670.2	"transporter family protein, putative, expressed"	Medtr7g083930.2	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156068.1.S1_at	A	A1TS	POPTR_0018s11760	POPTR_0018s11760 (10)	scaffold_18:12406088-12407197(+) (10)	NA	Q00IB6	RNA polymerase II C-terminal domain phosphatase-like 4	AT5G58003.1	C-terminal domain phosphatase-like 4 	LOC_Os05g32430.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g055870.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.156073.1.A1_at	A	A1TS	POPTR_0013s11570	POPTR_0013s11570 (9)	scaffold_13:12217279-12218068(+) (9)	NA	Q9P4S5	"tRNA nucleotidyltransferase, mitochondrial"	AT1G22660.1	Polynucleotide adenylyltransferase family protein 	LOC_Os12g07350.1	"tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed"	Medtr5g023710.1	Polynucleotide adenylyltransferase region 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0016779|nucleotidyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.15609.2.S1_a_at	A	A1TS	POPTR_0001s09930	POPTR_0001s09930 (11)	scaffold_1:7666549-7667436(-) (11)	NA	P48488	Serine/threonine-protein phosphatase PP1	AT4G11240.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os06g06880.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.156135.1.A1_s_at	A	A1TS	POPTR_0009s12430	POPTR_0009s12430 (11)	scaffold_9:10146335-10146797(-) (11)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT4G39080.1	vacuolar proton ATPase A3 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.156135.2.S1_at	A	A1TS	POPTR_0004s16750	POPTR_0004s16750 (11)	scaffold_4:17119018-17120588(-) (11)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT4G39080.1	vacuolar proton ATPase A3 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.156161.1.A1_at	A	A1TS	POPTR_0001s15780	POPTR_0001s15780 (11)	scaffold_1:12604404-12605239(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G47470.1	Nodulin MtN21 /EamA-like transporter family protein 	LOC_Os06g01660.1	"integral membrane protein DUF6 domain containing protein, expressed"	Medtr8g105640.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.156186.1.S1_at	A	A1TS	POPTR_0009s04980	POPTR_0009s04980 (9)	scaffold_9:5192605-5193081(+) (9)	NA	Q9FVN0	Ammonium transporter 1 member 3	AT4G13510.1	ammonium transporter 1;1 	LOC_Os04g43070.1	"ammonium transporter protein, putative, expressed"	Medtr1g065600.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.156224.1.A1_at	A	A2MS	POPTR_0019s01470	POPTR_0019s01470 (11)//POPTR_0121s00200 (10)	scaffold_121:2652-2769(-) (10)//scaffold_19:1221330-1221447(+) (10)//scaffold_19:1292915-1293032(+) (11)	POPTR_0019s01350 (7)	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.156247.1.S1_at	A	A1TS	POPTR_0006s06510	POPTR_0006s06510 (10)	scaffold_6:4708030-4710616(+) (11)	NA	NA	NA	AT5G52580.1	RabGAP/TBC domain-containing protein 	LOC_Os02g48000.2	"TBC domain containing protein, expressed"	Medtr8g121210.1	RabGAP/TBC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156265.1.S1_at	A	A1TS	POPTR_0006s15820	POPTR_0006s15820 (10)	scaffold_6:13470334-13470606(-) (10)	NA	Q9M1S8	Probable glutamate carboxypeptidase 2	AT5G19740.1	Peptidase M28 family protein 	LOC_Os01g54010.1	"peptidase, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.15627.1.S1_s_at	A	A1TS	POPTR_0017s04800	POPTR_0017s04800 (11)	scaffold_17:3704573-3704882(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.15627.2.S1_s_at	A	A1TS	POPTR_0017s04800	POPTR_0017s04800 (11)	scaffold_17:3703326-3703368(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.156271.1.S1_at	A	A1TS	POPTR_0001s22230	POPTR_0001s22230 (11)	scaffold_1:20867536-20869137(+) (11)	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT5G22050.2	Protein kinase superfamily protein 	LOC_Os07g06570.1	"receptor protein kinase CRINKLY4 precursor, putative, expressed"	Medtr2g104720.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156271.1.S1_s_at	A	A2TS	POPTR_0001s22230	POPTR_0001s22230 (11)//POPTR_0009s02090 (11)	scaffold_1:20868332-20869177(+) (11)//scaffold_9:2706782-2707513(+) (11)	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT5G22050.2	Protein kinase superfamily protein 	LOC_Os07g06570.1	"receptor protein kinase CRINKLY4 precursor, putative, expressed"	Medtr2g104720.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156290.1.S1_at	A	A1TS	POPTR_0006s00760	POPTR_0006s00760 (11)	scaffold_6:399449-399560(+) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT4G16360.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os05g41220.1	"SNF1-related protein kinase regulatory subunit beta-1, putative, expressed"	Medtr5g095330.1	"SNF1-related protein kinase regulatory subunit beta-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156290.1.S1_s_at	A	A1TS	POPTR_0006s00760	POPTR_0006s00760 (11)	scaffold_6:399584-400639(+) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT4G16360.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os05g41220.1	"SNF1-related protein kinase regulatory subunit beta-1, putative, expressed"	Medtr5g095330.1	"SNF1-related protein kinase regulatory subunit beta-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156310.1.S1_at	A	A1TS	POPTR_0011s01664	POPTR_0011s01664 (9)	scaffold_11:1179281-1179313(+) (9)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.1	expressed protein	Medtr6g076720.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.156313.1.S1_s_at	A	A1TS	POPTR_0001s02020	POPTR_0001s02020 (11)	scaffold_1:1495894-1497132(-) (11)	NA	Q80Y84	Lysine-specific demethylase 5B	AT5G46910.1	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os10g42690.1	"jmjC domain containing protein, expressed"	Medtr5g029270.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN "	NA	NA	GO:0005634|nucleus
PtpAffx.156315.1.S1_at	A	A1TS	POPTR_0014s07570	POPTR_0014s07570 (11)	scaffold_14:5686289-5687261(+) (11)	POPTR_0002s15740 (7)	P37225	"NAD-dependent malic enzyme 59 kDa isoform, mitochondrial"	AT4G00570.1	NAD-dependent malic enzyme 2 	LOC_Os10g35960.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g034840.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.156340.1.S1_at	A	A1TS	POPTR_0013s15160	POPTR_0013s15160 (11)	scaffold_13:15197487-15197726(+) (11)	NA	O22932	CBL-interacting serine/threonine-protein kinase 11	AT2G30360.1	SOS3-interacting protein 4 	LOC_Os05g43840.1	"CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g082950.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.156345.1.S1_at	A	A1MA	POPTR_0015s13740	POPTR_0015s13740 (10)	scaffold_15:13555031-13555504(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156354.1.S1_s_at	A	A1TS	POPTR_0016s10670	POPTR_0016s10670 (11)	scaffold_16:8947749-8953521(-) (11)	NA	Q03943	"Membrane-associated 30 kDa protein, chloroplastic"	AT1G65260.1	plastid transcriptionally active 4 	LOC_Os01g67000.1	"membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed"	Medtr4g092710.2	PspA/IM30 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15637.1.S1_at	A	A1TS	POPTR_0002s20240	POPTR_0002s20240 (11)	scaffold_2:16193529-16194503(+) (11)	NA	P93033	"Fumarate hydratase 1, mitochondrial"	AT2G47510.2	fumarase 1 	LOC_Os03g21950.1	"fumarate hydratase, mitochondrial precursor, putative, expressed"	Medtr1g107740.1	"Fumarate lyase; Fumarate hydratase, class II "	GO:0006099|tricarboxylic acid cycle	GO:0016829|lyase activity	NA
PtpAffx.156381.1.S1_at	A	A1TS	POPTR_0008s04160	POPTR_0008s04160 (10)	scaffold_8:2329030-2331016(-) (10)	NA	Q5M721	RNA pseudourine synthase 5	AT3G52260.2	Pseudouridine synthase family protein 	LOC_Os03g17920.2	"RNA pseudouridine synthase, putative, expressed"	Medtr1g121530.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.156393.1.S1_at	A	A1TS	POPTR_0006s12810	POPTR_0006s12810 (11)	scaffold_6:9978138-9978225(+) (11)	NA	P79769	Translin	AT2G37020.1	Translin family protein 	LOC_Os10g30640.1	"translin, putative, expressed"	NA	NA	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.1564.1.A1_at	A	A1TS	POPTR_0014s14690	POPTR_0014s14690 (11)	scaffold_14:10763172-10763296(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.1564.1.A1_s_at	A	A1TS	POPTR_0014s14690	POPTR_0014s14690 (11)	scaffold_14:10762960-10763550(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.1564.2.A1_s_at	A	A1TS	POPTR_0014s14690	POPTR_0014s14690 (11)	scaffold_14:10762977-10763550(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.156408.1.S1_at	A	A1TS	POPTR_0014s08310	POPTR_0014s08310 (11)	scaffold_14:6175631-6176510(+) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT4G00330.1	calmodulin-binding receptor-like cytoplasmic kinase 2 	LOC_Os03g05470.1	"tyrosine protein kinase domain containing protein, putative, expressed"	AC235567_9.1	"Serine/threonine protein kinase, active site AC235567.1 39723-36116 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15641.1.S1_s_at	A	A1MS	POPTR_0009s00940	POPTR_0009s00940 (11)	scaffold_9:1079095-1079712(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156415.1.S1_at	A	A1TS	POPTR_0014s04340	POPTR_0014s04340 (11)	scaffold_14:3401561-3402668(-) (11)	NA	Q9LPF6	Probable purine permease 11	AT1G44750.2	purine permease 11 	LOC_Os02g46380.2	"purine permease, putative, expressed"	Medtr7g092280.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156417.1.S1_at	A	A1TS	POPTR_0017s14390	POPTR_0017s14390 (11)	scaffold_17:14453306-14453853(-) (11)	NA	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570	AT1G13570.1	F-box/RNI-like superfamily protein 	LOC_Os02g33400.1	"OsFBL9 - F-box domain and LRR containing protein, expressed"	Medtr1g016390.1	FBD; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15642.1.S1_at	A	A1TS	POPTR_0005s22960	POPTR_0005s22960 (11)	scaffold_5:21811162-21811597(+) (11)	NA	NA	NA	AT3G52420.1	outer envelope membrane protein 7 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15642.2.S1_at	A	A1MS	POPTR_0002s05560	POPTR_0002s05560 (9)	scaffold_2:3643836-3644242(-) (9)	NA	NA	NA	AT3G52420.1	outer envelope membrane protein 7 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156428.1.S1_at	A	A1TS	POPTR_0007s12760	POPTR_0007s12760 (11)	scaffold_7:13023684-13024123(+) (11)	NA	Q9FL03	Scarecrow-like protein 4	AT5G66770.1	GRAS family transcription factor 	LOC_Os03g51330.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g107060.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15644.1.A1_at	A	A1TS	POPTR_0002s24930	POPTR_0002s24930 (11)	scaffold_2:22136641-22136700(-) (11)	NA	Q06915	"Probable glucan endo-1,3-beta-glucosidase A6"	AT3G07320.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os09g32550.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g012760.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.156448.1.S1_s_at	A	A1TS	POPTR_0010s10910	POPTR_0010s10910 (11)	scaffold_10:11288046-11291409(-) (11)	NA	Q5REY7	UBX domain-containing protein 7	AT1G14570.1	UBX domain-containing protein 	LOC_Os04g57520.1	"UBX domain-containing protein, putative, expressed"	AC229689_1.1	UBX; UAS; Thioredoxin-like fold AC229689.5 4995-12311 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156460.1.S1_at	A	A1TS	POPTR_0017s02840	POPTR_0017s02840 (10)	scaffold_17:2037005-2037523(+) (10)	NA	NA	NA	AT5G16610.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g12120.1	"no apical meristem protein, putative, expressed"	Medtr5g085900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15649.1.A1_at	A	A1TS	POPTR_0003s10640	POPTR_0003s10640 (11)	scaffold_3:11556538-11557783(+) (11)	NA	Q5KII2	Branchpoint-bridging protein	AT5G51300.3	splicing factor-related 	LOC_Os04g31620.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.15649.2.S1_s_at	A	A1TS	POPTR_0001s00850	POPTR_0001s00850 (11)	scaffold_1:706889-707860(-) (11)	NA	Q5KII2	Branchpoint-bridging protein	AT5G51300.3	splicing factor-related 	LOC_Os04g31620.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.156493.1.S1_at	A	A1TS	POPTR_0006s26830	POPTR_0006s26830 (11)	scaffold_6:24913455-24913583(-) (11)	NA	P29518	"Protein brittle-1, chloroplastic/amyloplastic"	AT4G32400.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40050.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g136730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156493.1.S1_s_at	A	A1TS	POPTR_0006s26830	POPTR_0006s26830 (11)	scaffold_6:24913112-24913426(-) (11)	NA	P29518	"Protein brittle-1, chloroplastic/amyloplastic"	AT4G32400.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40050.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g136730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156497.1.S1_s_at	A	A1TS	POPTR_0015s14830	POPTR_0015s14830 (11)	scaffold_15:14299769-14300137(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.156581.1.S1_at	A	A1TS	POPTR_0010s14220	POPTR_0010s14220 (11)	scaffold_10:13891232-13892777(-) (11)	NA	Q8K4H1	Probable arylformamidase	AT1G26120.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g49440.1	"serine esterase, putative, expressed"	AC233657_30.1	"Carboxylesterase, type B AC233657.1 159050-155204 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156593.2.S1_a_at	A	A1TS	POPTR_0014s13510	POPTR_0014s13510 (11)	scaffold_14:9945207-9946023(-) (11)//scaffold_14:9945521-9945691(-) (10)	NA	NA	NA	AT4G02880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03290.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g16440.1	"CUE domain containing protein, expressed"	Medtr1g086690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156604.1.S1_at	A	A1TS	POPTR_0005s16550	POPTR_0005s16550 (11)	scaffold_5:13429768-13430795(-) (11)	NA	Q8VYI9	Non-specific lipid-transfer protein-like protein At5g64080	AT4G08670.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g09230.1	"LTPL69 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g078840.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156607.1.S1_s_at	A	A1TS	POPTR_0005s04130	POPTR_0005s04130 (11)	scaffold_5:2725163-2728200(+) (11)	NA	Q9ASR4	Branched-chain-amino-acid aminotransferase-like protein 2	AT5G27410.2	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os03g24460.2	"aminotransferase domain containing protein, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.156608.1.S1_at	A	A1TS	POPTR_0010s20070	POPTR_0010s20070 (11)	scaffold_10:17818037-17818522(-) (11)	NA	P44797	Adenylosuccinate lyase	AT1G36280.1	L-Aspartase-like family protein 	LOC_Os03g19930.1	"adenylosuccinate lyase, putative, expressed"	Medtr7g111520.1	Fumarate lyase; Adenylosuccinate lyase 	GO:0044281|small molecule metabolic process||GO:0006188|IMP biosynthetic process	"GO:0004018|""N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"""	NA
PtpAffx.156614.1.S1_at	A	A1TS	POPTR_0010s10260	POPTR_0010s10260 (11)	scaffold_10:10813999-10815015(-) (11)	NA	NA	NA	AT1G14410.1	ssDNA-binding transcriptional regulator 	LOC_Os06g05350.1	"whirly transcription factor domain containing protein, expressed"	Medtr5g039580.1	ssDNA-binding transcriptional regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156619.1.S1_at	A	A2TS	POPTR_0017s07640	POPTR_0017s07640 (10)//POPTR_0565s00200 (9)	scaffold_17:5942065-5943058(+) (10)//scaffold_565:10155-11084(-) (9)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156620.1.S1_s_at	A	A1TS	POPTR_0005s16630	POPTR_0005s16630 (11)	scaffold_5:13612427-13612972(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156629.1.S1_at	A	A1TS	POPTR_0013s07950	POPTR_0013s07950 (11)	scaffold_13:6879364-6879789(+) (11)	POPTR_0019s08310 (8)	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os01g41210.1	"transposon protein, putative, unclassified, expressed"	Medtr7g143350.1	"Plant MuDR transposase; Zinc finger, SWIM-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.156635.1.S1_at	A	A1TS	POPTR_0005s01430	POPTR_0005s01430 (9)	scaffold_5:937437-938634(-) (9)	NA	O23403	"PsbP domain-containing protein 1, chloroplastic"	AT4G15510.1	Photosystem II reaction center PsbP family protein 	LOC_Os12g37710.1	"PsbP, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.156641.1.S1_at	A	A1TS	POPTR_0012s07480	POPTR_0012s07480 (10)	scaffold_12:8395989-8396676(-) (10)	NA	P49914	5-formyltetrahydrofolate cyclo-ligase	AT5G13050.1	5-formyltetrahydrofolate cycloligase 	LOC_Os07g39070.1	"5-formyltetrahydrofolate cyclo-ligase, putative, expressed"	NA	NA	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0030272|5-formyltetrahydrofolate cyclo-ligase activity	NA
PtpAffx.156647.1.S1_s_at	A	A1TS	POPTR_0002s09820	POPTR_0002s09820 (11)	scaffold_2:7035922-7036269(-) (11)	NA	Q9C9Q8	Probable pectin methyltransferase QUA2	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr5g072950.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.156655.1.S1_at	A	A1TS	POPTR_0019s11190	POPTR_0019s11190 (11)	scaffold_19:12568793-12569687(+) (11)	NA	Q94F09	Protein disulfide-isomerase 5-2	AT1G35620.1	PDI-like 5-2 	LOC_Os04g35290.1	"OsPDIL5-2  protein disulfide isomerase PDIL5-2, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.156696.1.S1_a_at	A	A1TS	POPTR_0008s14690	POPTR_0008s14690 (9)	scaffold_8:9753573-9753993(+) (11)	NA	NA	NA	AT1G14270.1	CAAX amino terminal protease family protein 	LOC_Os09g24670.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.1567.1.A1_a_at	A	A1TS	POPTR_0014s11270	POPTR_0014s11270 (11)	scaffold_14:8394173-8394770(+) (11)	NA	Q9NPF5	DNA methyltransferase 1-associated protein 1	AT2G47210.1	myb-like transcription factor family protein 	LOC_Os05g46330.1	"MYB family transcription factor, putative, expressed"	Medtr7g133340.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156703.1.S1_at	A	A1MS	POPTR_0005s17860	POPTR_0005s17860 (11)	scaffold_5:15614913-15615334(-) (11)	NA	P27140	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.2	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr5g075060.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.156703.2.S1_a_at	A	A1TS	POPTR_0005s17860	POPTR_0005s17860 (11)	scaffold_5:15616541-15616969(-) (11)	NA	P27140	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.2	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr5g075060.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.156707.1.S1_s_at	A	A1TS	POPTR_0010s17430	POPTR_0010s17430 (11)	scaffold_10:16006303-16006488(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.2	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.156758.1.S1_s_at	A	A1TS	POPTR_0003s06690	POPTR_0003s06690 (11)	scaffold_3:8218371-8219370(+) (11)	NA	NA	NA	AT1G72390.1	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). 	LOC_Os10g25200.1	expressed protein	Medtr8g025570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156764.1.S1_at	A	A1TS	POPTR_0003s19430	POPTR_0003s19430 (11)	scaffold_3:18158744-18160762(-) (11)	NA	Q9LHK1	"Nudix hydrolase 16, mitochondrial"	AT3G12600.1	nudix hydrolase homolog 16 	LOC_Os03g59580.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g043270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.15679.1.S1_at	A	A1TS	POPTR_0008s04100	POPTR_0008s04100 (10)	scaffold_8:2281892-2282377(-) (10)	NA	Q94KB7	MLO-like protein 6	AT1G61560.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr2g110820.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.156795.1.S1_at	A	A1TS	POPTR_0006s06100	POPTR_0006s06100 (9)	scaffold_6:4336854-4337803(+) (9)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.2	glucuronidase 3 	LOC_Os06g08090.2	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.156807.1.S1_at	A	A1TS	POPTR_0019s03530	POPTR_0019s03530 (11)	scaffold_19:3614648-3614992(+) (11)	POPTR_0013s04350 (6)	O07051	L-allo-threonine aldolase	AT1G08630.4	threonine aldolase 1 	LOC_Os04g43650.2	"L-allo-threonine aldolase, putative, expressed"	Medtr1g093690.1	"Aromatic amino acid beta-eliminating lyase/threonine aldolase; Polynucleotidyl transferase, Ribonuclease H fold; ; "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity	NA
PtpAffx.156811.1.S1_at	A	A1TS	POPTR_0009s16700	POPTR_0009s16700 (11)	scaffold_9:12633269-12634541(+) (11)	NA	NA	NA	AT4G38370.1	Phosphoglycerate mutase family protein 	LOC_Os04g14760.1	"phosphoglycerate mutase, putative, expressed"	Medtr5g106670.1	Phosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156826.1.S1_s_at	A	A1TS	POPTR_0003s13340	POPTR_0003s13340 (11)	scaffold_3:13738695-13740078(+) (11)	NA	Q9SUR3	Reticulon-like protein B1	AT4G23630.1	VIRB2-interacting protein 1 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.156848.1.S1_s_at	A	A1TS	POPTR_0004s23120	POPTR_0004s23120 (11)	scaffold_4:21901132-21902112(-) (11)	NA	A8ID74	Ribosome biogenesis protein BOP1 homolog	AT2G40360.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g25440.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g005810.1	"Calcium-binding EF-hand; WD40-like; BOP1, N-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0005634|nucleus
PtpAffx.156852.1.S1_s_at	A	A1TS	POPTR_0006s10250	POPTR_0006s10250 (11)	scaffold_6:7665712-7666155(-) (11)	NA	P48620	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.156861.1.S1_at	A	A1TS	POPTR_0010s00500	POPTR_0010s00500 (9)	scaffold_10:255245-255798(-) (9)	NA	P13940	Late embryogenesis abundant protein D-29	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156864.1.S1_at	A	A1TS	POPTR_0004s18610	POPTR_0004s18610 (9)	scaffold_4:18447557-18448628(-) (9)	POPTR_0009s14150 (6)	Q39108	"Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic"	AT4G38460.1	geranylgeranyl reductase 	LOC_Os02g44780.3	"polyprenyl synthetase, putative, expressed"	AC146550_1.1	Polyprenyl synthetase AC146550.40 4-1850 E EGN_Mt090430 200	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.156876.1.S1_s_at	A	A1TS	POPTR_0004s17850	POPTR_0004s17850 (11)	scaffold_4:17893916-17894482(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156891.1.S1_at	A	A1TS	POPTR_0019s02260	POPTR_0019s02260 (10)	scaffold_19:2104994-2107007(-) (10)	NA	Q8T4E1	Putative GPI-anchor transamidase	AT1G08750.3	Peptidase C13 family 	LOC_Os02g12740.1	"GPI-anchor transamidase precursor, putative, expressed"	Medtr2g073970.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.156899.1.S1_at	A	A1TS	POPTR_0006s07670	POPTR_0006s07670 (11)	scaffold_6:5612197-5612325(-) (11)	NA	NA	NA	AT2G19080.1	metaxin-related 	LOC_Os06g07160.1	expressed protein	Medtr8g129480.1	"glutathione S-transferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156901.1.S1_at	A	A1TS	POPTR_0001s11550	POPTR_0001s11550 (10)	scaffold_1:8975539-8977475(-) (10)	NA	O43290	U4/U6.U5 tri-snRNP-associated protein 1	AT5G16780.1	SART-1 family 	LOC_Os02g30730.2	"SART-1 family protein, putative, expressed"	Medtr1g100420.1	SART-1 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156902.1.S1_at	A	A1TS	POPTR_0008s11900	POPTR_0008s11900 (11)	scaffold_8:7640800-7641413(+) (11)	NA	Q9LUA2	Ethylene-responsive transcription factor ERF119	AT3G25890.2	Integrase-type DNA-binding superfamily protein 	LOC_Os09g13940.2	"AP2 domain containing protein, expressed"	AC233660_41.1	Pathogenesis-related transcriptional factor and ERF AC233660.2 151624-147758 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.156916.1.S1_at	A	A1TS	POPTR_0010s20580	POPTR_0010s20580 (10)	scaffold_10:18101501-18103558(+) (10)	NA	Q54TS4	Protein YIPF1 homolog	AT2G39805.1	Integral membrane Yip1 family protein 	LOC_Os05g38180.4	"Yip1 domain containing protein, expressed"	Medtr5g088310.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156940.1.S1_s_at	A	A1TS	POPTR_2535s00200	POPTR_2535s00200 (11)	scaffold_2535:553-1053(+) (11)	NA	Q8LPQ9	Flowering time control protein FPA	AT2G43410.4	RNA binding 	LOC_Os09g34070.2	"RNA recognition motif containing protein, expressed"	Medtr4g092490.1	RNA-binding region RNP-1 (RNA recognition motif); SPOC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156942.1.S1_at	A	A1TS	POPTR_0004s01070	POPTR_0004s01070 (10)	scaffold_4:537617-539657(-) (10)	NA	Q00624	L-ascorbate oxidase homolog	AT4G22010.1	SKU5  similar 4 	LOC_Os06g46500.1	"monocopper oxidase, putative, expressed"	Medtr8g147000.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.156945.1.S1_at	A	A1TS	POPTR_0015s10550	POPTR_0015s10550 (11)	scaffold_15:11444427-11444507(-) (11)	NA	A2YBX5	Protein kinase G11A	AT2G26700.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g07940.1	"AGC_PVPK_like_kin82y.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g119560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.156945.1.S1_s_at	A	A1TS	POPTR_0015s10550	POPTR_0015s10550 (11)	scaffold_15:11443879-11444441(-) (11)	NA	A2YBX5	Protein kinase G11A	AT2G26700.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g07940.1	"AGC_PVPK_like_kin82y.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g119560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.156953.1.S1_s_at	A	A1TS	POPTR_0014s18570	POPTR_0014s18570 (11)	scaffold_14:15900329-15900783(+) (11)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT2G20300.1	Protein kinase superfamily protein 	LOC_Os02g57080.1	"serine/threonine-protein kinase, putative, expressed"	Medtr7g117650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.156958.1.S1_at	A	A1TS	POPTR_0005s23570	POPTR_0005s23570 (9)	scaffold_5:22298251-22299333(-) (9)	NA	Q94A20	BI1-like protein	AT1G03070.2	Bax inhibitor-1 family protein 	LOC_Os03g53400.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr1g083870.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156973.1.S1_at	A	A1TS	POPTR_0003s04070	POPTR_0003s04070 (11)	scaffold_3:4720298-4720403(-) (11)	NA	O81488	PHD finger protein At5g26210	AT2G02470.1	alfin-like 6 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15698.1.S1_at	A	A1TS	POPTR_0011s16870	POPTR_0011s16870 (9)	scaffold_11:18611553-18612102(+) (9)	NA	O65351	Subtilisin-like protease	AT5G59810.1	Subtilase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.156996.1.S1_at	A	A1TS	POPTR_0001s10280	POPTR_0001s10280 (11)	scaffold_1:7968730-7969186(+) (11)	NA	Q9SUQ3	Probable inactive receptor kinase At4g23740	AT4G23740.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g12390.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr5g009760.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.157018.2.S1_s_at	A	A1TS	POPTR_0006s24090	POPTR_0006s24090 (11)	scaffold_6:22774058-22774480(+) (11)	NA	Q11011	Puromycin-sensitive aminopeptidase	AT4G33090.1	aminopeptidase M1 	LOC_Os02g12650.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.15702.1.A1_at	A	A1TS	POPTR_0002s18520	POPTR_0002s18520 (11)	scaffold_2:14420780-14421497(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157025.1.S1_at	A	A1TS	POPTR_0008s20330	POPTR_0008s20330 (11)	scaffold_8:14083949-14084497(-) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT5G18930.1	Adenosylmethionine decarboxylase family protein 	LOC_Os05g04990.1	"adenosylmethionine decarboxylase, putative, expressed"	Medtr8g140130.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.157035.1.S1_s_at	A	A1TS	POPTR_0003s15760	POPTR_0003s15760 (11)	scaffold_3:15475710-15476182(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157042.1.S1_at	A	A1TS	POPTR_0002s19380	POPTR_0002s19380 (11)	scaffold_2:15337682-15340160(+) (11)	NA	O04425	Flowering time control protein FCA	AT2G47310.1	flowering time control protein-related / FCA gamma-related 	LOC_Os09g03610.4	"flowering time control protein FCA, putative, expressed"	Medtr8g136920.1	RNA-binding region RNP-1 (RNA recognition motif); WW/Rsp5/WWP 	NA	GO:0003676|nucleic acid binding||GO:0005515|protein binding	NA
PtpAffx.157048.1.S1_at	A	A1TS	POPTR_0003s07520	POPTR_0003s07520 (11)	scaffold_3:9080113-9080459(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT4G16650.1	O-fucosyltransferase family protein 	LOC_Os04g46570.1	"growth regulator related protein, putative, expressed"	Medtr8g105620.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157050.1.S1_at	A	A1TS	POPTR_0008s06900	POPTR_0008s06900 (11)	scaffold_8:4155874-4155924(+) (11)	NA	P0A522	Probable ATP-dependent Clp protease ATP-binding subunit	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157050.1.S1_s_at	A	A1TS	POPTR_0008s06900	POPTR_0008s06900 (11)	scaffold_8:4155994-4156245(+) (11)	NA	P0A522	Probable ATP-dependent Clp protease ATP-binding subunit	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157051.1.S1_at	A	A2TS	POPTR_0001s09710	POPTR_0003s13090 (11)//POPTR_0001s09710 (11)	scaffold_1:7436699-7437060(+) (11)//scaffold_3:13495816-13496175(+) (11)	NA	NA	NA	AT1G63850.1	BTB/POZ domain-containing protein 	LOC_Os04g49060.1	"H-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	Medtr8g094180.1	PRLI-interacting factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157054.1.S1_at	A	A1MS	POPTR_0001s23720	POPTR_0001s23720 (10)	scaffold_1:23124162-23124599(+) (10)	NA	NA	NA	AT2G44360.1	unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g38080.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157058.1.S1_at	A	A1TS	POPTR_0014s05790	POPTR_0014s05790 (9)	scaffold_14:4348033-4349572(+) (9)	NA	A5YKK6	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.1	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157059.1.S1_s_at	A	A1TS	POPTR_0014s18990	POPTR_0014s18990 (11)	scaffold_14:16664327-16664835(+) (11)	NA	Q9FLP6	Small ubiquitin-related modifier 2	AT5G55160.1	small ubiquitin-like modifier 2 	LOC_Os01g68950.1	"ubiquitin family domain containing protein, expressed"	AC225519_6.1	Ubiquitin; Inorganic pyrophosphatase AC225519.5 35386-39197 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157082.1.S1_s_at	A	A4TS	POPTR_0003s01880	POPTR_0003s01950 (11)//POPTR_0003s01880 (11)//POPTR_0003s01940 (11)//POPTR_0003s01920 (10)	scaffold_3:1755871-1756123(-) (11)//scaffold_3:1801340-1801588(-) (10)//scaffold_3:1818414-1818666(-) (11)//scaffold_3:1838460-1838712(-) (11)	NA	Q4U4N4	Interferon-induced GTP-binding protein Mx2	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.157099.1.S1_at	A	A1TS	POPTR_0003s13800	POPTR_0003s13800 (10)	scaffold_3:14078368-14078901(+) (10)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157113.1.S1_s_at	A	A1TS	POPTR_0001s12510	POPTR_0001s12510 (11)	scaffold_1:9711083-9711438(-) (11)	NA	B0CAZ0	Chaperone protein dnaJ	AT5G59610.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g60790.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g117200.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.157114.1.S1_at	A	A1TS	POPTR_0017s12630	POPTR_0017s12630 (11)	scaffold_17:12828541-12828838(-) (11)	NA	Q8YM56	Chaperone protein ClpB 2	AT5G15450.1	casein lytic proteinase B3 	LOC_Os03g31300.1	"chaperone protein clpB 1, putative, expressed"	Medtr6g014150.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.157124.1.S1_at	A	A1TS	POPTR_0019s15350	POPTR_0019s15350 (11)	scaffold_19:15877193-15878901(-) (11)	NA	B4PS83	Cohesin loading complex subunit SCC4 homolog	AT5G51340.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g28010.1	expressed protein	Medtr5g083820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157131.1.S1_at	A	A1TS	POPTR_0012s04230	POPTR_0012s04230 (10)	scaffold_12:3466655-3468308(+) (10)	NA	Q8VWG7	TPR repeat-containing thioredoxin TDX	AT3G17880.1	tetraticopeptide domain-containing thioredoxin 	LOC_Os09g23650.1	"FAM10 family protein, putative, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.157133.1.S1_s_at	A	A1TS	POPTR_0007s06860	POPTR_0007s06860 (11)	scaffold_7:5197660-5198194(-) (11)	NA	A4GYX4	Putative membrane protein ycf1	AT4G39420.2	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g08750.2	expressed protein	Medtr4g141160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157134.1.S1_s_at	A	A1TS	POPTR_0008s11850	POPTR_0008s11850 (11)	scaffold_8:7591982-7592214(-) (11)	NA	NA	NA	AT1G13360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04010.1	expressed protein	Medtr4g158300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157136.1.S1_at	A	A1TS	POPTR_0008s17420	POPTR_0008s17420 (9)	scaffold_8:11690051-11690601(+) (9)	NA	Q9LIR6	"Beta-amylase 1, chloroplastic"	AT3G23920.1	beta-amylase 1 	LOC_Os03g04770.1	"beta-amylase, putative, expressed"	Medtr5g013790.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.157137.1.S1_s_at	A	A1TS	POPTR_0005s10830	POPTR_0005s10830 (11)	scaffold_5:7795232-7796116(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G35780.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.157141.1.S1_s_at	A	A1TS	POPTR_0015s05610	POPTR_0015s05610 (11)	scaffold_15:5955833-5956830(-) (11)	POPTR_0012s00900 (8)//POPTR_0012s03320 (7)	Q54NM9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3	AT1G34130.1	staurosporin and temperature sensitive 3-like b 	LOC_Os04g57890.1	"oligosaccharyl transferase, putative, expressed"	Medtr6g089790.1	"Oligosaccharyl transferase, STT3 subunit "	GO:0006486|protein amino acid glycosylation	GO:0004576|oligosaccharyl transferase activity	GO:0016020|membrane
PtpAffx.157144.1.S1_at	A	A1TS	POPTR_0017s01990	POPTR_0017s01990 (9)	scaffold_17:1452552-1452913(-) (9)	POPTR_0004s07860 (6)	NA	NA	AT3G03210.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os10g39400.1	expressed protein	Medtr5g084830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157147.1.S1_at	A	A1TS	POPTR_0017s04470	POPTR_0017s04470 (9)	scaffold_17:3449082-3450806(+) (9)	NA	Q9FKW0	Putative E3 ubiquitin-protein ligase RING1a	AT5G44280.1	RING 1A 	LOC_Os05g41795.1	"zinc finger C3HC4 type family protein, putative, expressed"	Medtr4g125080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157148.1.S1_at	A	A1TS	POPTR_0005s23470	POPTR_0005s23470 (11)	scaffold_5:22213729-22214490(+) (11)	NA	NA	NA	AT4G04614.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g42430.1	expressed protein	Medtr1g084010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157171.1.S1_at	A	A1TS	POPTR_0002s03790	POPTR_0002s03790 (11)	scaffold_2:2353899-2354369(+) (11)	NA	P04844	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	AT4G21150.3	ribophorin II (RPN2) family protein 	LOC_Os01g68324.2	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0071212|subsynaptic reticulum||GO:0008250|oligosaccharyltransferase complex
PtpAffx.157185.1.S1_a_at	A	A2TS	POPTR_0001s02860	POPTR_0001s02860 (11)//POPTR_0003s08670 (11)	scaffold_1:2259614-2260241(+) (11)//scaffold_3:10071601-10072235(-) (11)	NA	Q42581	"Ribose-phosphate pyrophosphokinase 1, chloroplastic"	AT2G35390.2	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.1572.1.S1_at	A	A1TS	POPTR_0008s08030	POPTR_0008s08030 (9)	scaffold_8:4962302-4962678(+) (9)	NA	Q0VCZ3	YTH domain family protein 2	AT1G79270.1	evolutionarily conserved C-terminal region 8 	LOC_Os01g48790.1	"YT521-B-like family domain containing protein, expressed"	Medtr2g085380.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157201.1.S1_at	A	A1TS	POPTR_0005s02730	POPTR_0005s02730 (11)	scaffold_5:1739627-1740887(-) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT3G50700.1	indeterminate(ID)-domain 2 	LOC_Os02g31890.1	ZOS2-08 - C2H2 zinc finger protein	Medtr7g130150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.157204.1.S1_s_at	A	A1MS	POPTR_0013s00960	POPTR_0013s00960 (10)	scaffold_13:501876-502721(+) (10)	NA	Q5EA50	Rab9 effector protein with kelch motifs	AT1G74150.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157213.1.S1_at	A	A1TS	POPTR_0012s09450	POPTR_0012s09450 (11)	scaffold_12:10477112-10477627(-) (11)	NA	Q9Y2W2	WW domain-binding protein 11	AT5G62640.1	proline-rich family protein 	LOC_Os07g09510.1	"retrotransposon protein, putative, unclassified, expressed"	AC233677_4.1	"Formin-like protein 3, related AC233677.2 22162-26524 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	NA
PtpAffx.157223.1.S1_at	A	A1TS	POPTR_0025s00420	POPTR_0025s00420 (10)	scaffold_25:173126-173546(-) (10)	NA	Q3E9A0	"Probable anion transporter 6, chloroplastic"	AT5G20380.1	phosphate transporter 4;5 	LOC_Os09g38410.1	"sialin, putative, expressed"	Medtr8g122090.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157241.1.S1_at	A	A1TS	POPTR_0001s06240	POPTR_0001s06240 (11)	scaffold_1:4812455-4813072(+) (11)	NA	NA	NA	AT3G54500.2	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g31360.4	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15726.1.S1_at	A	A1TS	POPTR_0014s02530	POPTR_0014s02530 (9)	scaffold_14:2097971-2098327(+) (9)	NA	Q8LC30	Ethylene-responsive transcription factor RAP2-1	AT1G46768.1	related to AP2 1 	LOC_Os04g55520.1	"AP2 domain containing protein, expressed"	Medtr3g147420.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.15726.2.S1_at	A	A1TS	POPTR_0002s12550	POPTR_0002s12550 (10)	scaffold_2:9324265-9324808(+) (10)	NA	Q8LC30	Ethylene-responsive transcription factor RAP2-1	AT1G46768.1	related to AP2 1 	LOC_Os04g55520.1	"AP2 domain containing protein, expressed"	Medtr3g147420.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.157269.1.S1_at	A	A1TS	POPTR_0006s27080	POPTR_0006s27080 (10)	scaffold_6:25097750-25098545(-) (10)	NA	NA	NA	AT4G32295.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15727.2.S1_at	A	A1TS	POPTR_0015s11590	POPTR_0015s11590 (10)	scaffold_15:12157233-12157344(+) (10)	NA	NA	NA	AT3G48860.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157282.1.S1_at	A	A1TS	POPTR_0004s18450	POPTR_0004s18450 (10)	scaffold_4:18343694-18344851(-) (10)	NA	P37034	Uncharacterized transporter lpg1691	AT1G31830.1	Amino acid permease family protein 	LOC_Os03g37984.2	"amino acid permease family protein, putative, expressed"	Medtr5g026930.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157284.1.S1_at	A	A1TS	POPTR_0006s24710	POPTR_0006s24710 (11)	scaffold_6:23295324-23296343(+) (11)	POPTR_0018s05050 (7)	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.1	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os02g13110.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157300.1.S1_s_at	A	A1TS	POPTR_0008s07250	POPTR_0008s07250 (11)	scaffold_8:4416024-4416310(-) (11)	NA	P56286	Eukaryotic translation initiation factor 2 subunit alpha	AT2G40290.1	Eukaryotic translation initiation factor 2 subunit 1 	LOC_Os03g18510.1	expressed protein	Medtr3g094730.1	"RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005850|eukaryotic translation initiation factor 2 complex
PtpAffx.157303.1.S1_at	A	A1TS	POPTR_0004s14230	POPTR_0004s14230 (11)	scaffold_4:14708425-14709416(+) (11)	NA	Q9C810	PHD finger protein At1g33420	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g65600.1	"PHD-finger domain containing protein, putative, expressed"	Medtr4g041260.1	"Protein of unknown function UPF0054; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157312.1.S1_at	A	A1TS	POPTR_0001s32670	POPTR_0001s32670 (11)	scaffold_1:30959422-30959939(-) (11)	NA	NA	NA	AT5G43490.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g63040.1	expressed protein	Medtr3g105200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15733.1.S1_a_at	A	A1TS	POPTR_0001s34310	POPTR_0001s34310 (9)	scaffold_1:32479663-32479887(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157333.1.S1_s_at	A	A1TS	POPTR_0006s05600	POPTR_0006s05600 (11)	scaffold_6:3947103-3947634(-) (11)	NA	Q3EAI1	Transcription factor bHLH60	AT3G57800.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g32510.4	"BHLH transcription factor, putative, expressed"	Medtr1g071420.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.157346.1.S1_s_at	A	A1TS	POPTR_0002s11320	POPTR_0002s11320 (11)	scaffold_2:8370708-8371548(+) (11)	NA	NA	NA	AT1G10020.1	Protein of unknown function (DUF1005) 	LOC_Os07g04150.1	"stress-induced protein, putative, expressed"	Medtr5g005600.1	Protein of unknown function DUF1005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157368.1.S1_s_at	A	A2TS	POPTR_0001s15980	POPTR_0003s07230 (11)//POPTR_0001s15980 (11)	scaffold_1:12806510-12806906(-) (11)//scaffold_3:8815195-8815593(+) (11)	NA	O64765	Probable UDP-N-acetylglucosamine pyrophosphorylase	AT1G31070.2	N-acetylglucosamine-1-phosphate uridylyltransferase 1 	LOC_Os04g52370.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.157374.1.S1_a_at	A	A1TS	POPTR_0011s08360	POPTR_0011s08360 (11)	scaffold_11:9700662-9701807(-) (11)//scaffold_4:5140027-5141211(+) (11)	POPTR_0004s06390 (8)	Q8IYT4	Katanin p60 ATPase-containing subunit A-like 2	AT2G34560.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g48270.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g165730.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.157376.1.S1_at	A	A1TS	POPTR_0002s20740	POPTR_0002s20740 (10)	scaffold_2:16829504-16830136(-) (10)	POPTR_0014s12560 (7)	Q505J9	ATPase family AAA domain-containing protein 1	AT1G02890.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr1g108580.1	"Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central region; SMAD/FHA "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.157378.1.S1_at	A	A1MS	POPTR_0002s17130	POPTR_0002s17130 (11)	scaffold_2:12927326-12927737(-) (11)	NA	Q9M367	Beclin-1-like protein	AT3G61710.1	AUTOPHAGY 6 	LOC_Os01g48920.1	"beclin-1, putative, expressed"	Medtr3g020350.2	Autophagy protein Apg6 	GO:0006914|autophagy	NA	NA
PtpAffx.157379.1.S1_at	A	A1TS	POPTR_0019s00750	POPTR_0019s00750 (10)	scaffold_19:501279-502047(-) (10)	NA	P81395	Myb-related protein 330	AT2G16720.1	myb domain protein 7 	LOC_Os05g35500.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157387.1.S1_at	A	A1TS	POPTR_0010s18140	POPTR_0010s18140 (11)	scaffold_10:16502716-16504891(-) (11)	NA	NA	NA	AT1G79420.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157389.1.S1_at	A	A1TS	POPTR_0002s17740	POPTR_0002s17740 (10)	scaffold_2:13564616-13566072(+) (10)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT2G46710.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os02g45600.1	"rhoGAP domain containing protein, expressed"	Medtr8g029150.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.157390.1.S1_at	A	A1TS	POPTR_0004s21200	POPTR_0004s21200 (10)	scaffold_4:20431573-20433550(+) (10)	NA	Q1E6U9	Protein transport protein SEC24	AT2G27460.1	sec23/sec24 transport family protein 	LOC_Os05g37120.1	"sec23/Sec24 zinc finger family protein, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.157395.1.S1_s_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5418331-5418661(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
PtpAffx.1574.1.A1_at	A	A1TS	POPTR_0006s20540	POPTR_0006s20540 (10)	scaffold_6:19551621-19552042(-) (10)	NA	Q9SAK5	Myb family transcription factor APL	AT5G06800.1	myb-like HTH transcriptional regulator family protein 	LOC_Os04g56990.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g111700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157406.1.S1_at	A	A1TS	POPTR_0018s14730	POPTR_0018s14730 (11)	scaffold_18:14825489-14825785(-) (11)	NA	Q93Z08	"Glucan endo-1,3-beta-glucosidase 6"	AT5G58090.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g04670.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.157411.1.S1_s_at	A	A1TS	POPTR_0008s03990	POPTR_0008s03990 (10)	scaffold_8:2199519-2199728(+) (10)	NA	Q8VX13	Protein disulfide isomerase-like 1-3	AT3G54960.1	PDI-like 1-3 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.157470.2.A1_a_at	A	A1TS	POPTR_0012s06760	POPTR_0012s06760 (11)	scaffold_12:7233958-7235560(-) (11)	NA	O82796	"Phosphoserine phosphatase, chloroplastic"	AT1G18640.2	3-phosphoserine phosphatase 	LOC_Os11g41160.3	"phosphoserine phosphatase, chloroplast precursor, putative, expressed"	Medtr3g036690.1	"Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase subfamily IB, PSPase-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.157471.1.S1_s_at	A	A1TS	POPTR_0009s08490	POPTR_0009s08490 (11)	scaffold_9:7754118-7754931(-) (11)	NA	Q04212	D-arabinose 1-dehydrogenase	AT4G33670.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os12g29760.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g121930.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.157477.1.S1_at	A	A1TS	POPTR_0015s05050	POPTR_0015s05050 (10)	scaffold_15:5351453-5351736(+) (10)	NA	Q9FX31	Homeobox-leucine zipper protein HDG11	AT1G73360.1	homeodomain GLABROUS 11 	LOC_Os06g10600.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.15748.1.S1_at	A	A1TS	POPTR_0008s02970	POPTR_0008s02970 (10)	scaffold_8:1557190-1557619(+) (10)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g44590.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr7g124420.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.15748.2.S1_at	A	A1TS	POPTR_0008s02970	POPTR_0008s02970 (11)	scaffold_8:1557764-1557859(+) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g44590.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr7g124420.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.157486.1.S1_at	A	A1TS	POPTR_0015s10840	POPTR_0015s10840 (11)	scaffold_15:11633784-11634997(+) (11)	NA	O23034	Ubiquitin-like modifier-activating enzyme 5	AT1G05350.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g30310.1	"ThiF family domain containing protein, putative, expressed"	Medtr3g150540.1	UBA/THIF-type NAD/FAD binding fold 	NA	GO:0003824|catalytic activity	NA
PtpAffx.15749.1.S1_at	A	A1TS	POPTR_0018s04570	POPTR_0018s04570 (11)	scaffold_18:3855782-3856261(-) (11)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157493.1.S1_at	A	A1TS	POPTR_0015s11750	POPTR_0015s11750 (9)	scaffold_15:12294673-12295784(+) (10)	NA	Q9FH50	"APO protein 3, mitochondrial"	AT5G61930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os07g40920.1	"APO, putative, expressed"	Medtr5g080800.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15752.1.S1_at	A	A1TS	POPTR_0004s20320	POPTR_0004s20320 (11)	scaffold_4:19890843-19891277(-) (11)	NA	P73387	Ycf60-like protein	AT5G55710.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g49470.1	"tic20 protein-related, putative, expressed"	Medtr5g103380.1	"Ycf60-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157532.1.S1_at	A	A1TS	POPTR_0016s01600	POPTR_0016s01600 (9)	scaffold_16:721136-721169(-) (10)//scaffold_16:725804-725837(-) (9)	POPTR_0016s01610 (7)	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21760.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157532.1.S1_s_at	A	A4TS	POPTR_0016s01570	POPTR_0016s01570 (11)//POPTR_0016s01610 (10)//POPTR_0016s01600 (10)//POPTR_0016s01590 (9)	scaffold_16:713702-714150(-) (11)//scaffold_16:721122-726165(-) (11)//scaffold_16:726152-726238(-) (9)//scaffold_16:732177-732274(+) (10)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21760.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g32010.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157533.1.S1_at	A	A1TS	POPTR_0008s17260	POPTR_0008s17260 (11)	scaffold_8:11591234-11591583(+) (11)	NA	Q8DGC4	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	AT1G48520.1	GLU-ADT subunit B 	LOC_Os11g34210.2	"aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed"	Medtr5g067700.1	"GatB, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.157536.1.S1_at	A	A1TS	POPTR_0009s09240	POPTR_0009s09240 (11)	scaffold_9:8245735-8245869(-) (11)	NA	Q9XJ35	"ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic"	AT1G49970.1	CLP protease proteolytic subunit 1 	LOC_Os05g51450.1	"OsClp8 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.157550.1.S1_at	A	A1TS	POPTR_0011s10090	POPTR_0011s10090 (10)	scaffold_11:12604972-12608057(+) (10)	NA	Q9FVJ3	ADP-ribosylation factor GTPase-activating protein AGD12	AT4G21160.4	Calcium-dependent ARF-type GTPase activating protein family 	LOC_Os06g40704.3	"stromal membrane-associated protein, putative, expressed"	Medtr4g136810.1	C2; Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.157551.1.S1_s_at	A	A1TS	POPTR_0015s03480	POPTR_0015s03480 (11)	scaffold_15:3035946-3037828(+) (11)	NA	Q9ZPQ3	D-aminoacyl-tRNA deacylase	AT2G03800.1	D-aminoacyl-tRNA deacylases 	LOC_Os08g25140.1	"ethanol tolerance protein GEKO1, putative, expressed"	Medtr8g077420.1	Protein of unknown function DUF516 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15756.1.A1_at	A	A1TS	POPTR_0010s18930	POPTR_0010s18930 (11)	scaffold_10:17017138-17017362(+) (11)	NA	NA	NA	AT3G10980.1	PLAC8 family protein 	LOC_Os05g39730.1	"SAG20, putative, expressed"	Medtr5g091160.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157564.1.S1_s_at	A	A1TS	POPTR_0015s08020	POPTR_0015s08020 (11)	scaffold_15:9302446-9303218(-) (11)	NA	Q869R9	Myb-like protein J	AT1G19000.2	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr5g038100.1	"Zinc finger, CCHC-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157569.1.S1_s_at	A	A1TS	POPTR_0004s11240	POPTR_0004s11240 (11)	scaffold_4:9868436-9869259(+) (11)	NA	Q86KZ2	General transcription factor IIH subunit 2	AT1G05055.1	general transcription factor II H2 	LOC_Os04g42990.1	"suppressor of stem-loop protein 1, putative, expressed"	Medtr7g106470.1	"von Willebrand factor, type A; Zinc finger, C2H2-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.157606.1.S1_s_at	A	A1TS	POPTR_0002s08790	POPTR_0002s08790 (11)	scaffold_2:6178306-6179950(+) (11)	POPTR_0005s16060 (8)	Q8W486	DUF246 domain-containing protein At1g04910	AT1G38131.1	O-fucosyltransferase family protein 	LOC_Os12g07540.1	"growth regulator related protein, putative, expressed"	Medtr5g065110.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157607.1.S1_at	A	A1TS	POPTR_0005s22730	POPTR_0005s22730 (11)	scaffold_5:21622664-21623133(-) (11)	NA	NA	NA	AT1G06660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g56590.1	expressed protein	Medtr5g098090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157610.1.S1_at	A	A1TS	POPTR_0004s21180	POPTR_0004s21180 (10)	scaffold_4:20411863-20412636(-) (10)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.157613.1.S1_at	A	A1TS	POPTR_0014s07040	POPTR_0014s07040 (10)	scaffold_14:5315274-5315515(-) (10)	NA	Q8VYD9	"CRS2-associated factor 1, mitochondrial"	AT4G31010.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os08g07790.1	"CRS2-associated factor 2, mitochondrial precursor, putative, expressed"	Medtr7g083490.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.157617.1.S1_s_at	A	A1TS	POPTR_0018s00760	POPTR_0018s00760 (11)	scaffold_18:654791-655645(-) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.157621.1.S1_s_at	A	A1TS	POPTR_0012s14150	POPTR_0012s14150 (11)	scaffold_12:14145454-14145808(+) (11)	NA	Q8GW72	Alpha-L-fucosidase 1	AT2G28100.1	alpha-L-fucosidase 1 	LOC_Os09g34920.1	"glycosyl hydrolase family 29, putative, expressed"	Medtr1g130150.1	"Glycoside hydrolase, family 29 (alpha-L-fucosidase) "	GO:0005975|carbohydrate metabolic process||GO:0007155|cell adhesion	GO:0004560|alpha-L-fucosidase activity	NA
PtpAffx.157624.1.S1_at	A	A1TS	POPTR_0010s05520	POPTR_0010s05520 (10)	scaffold_10:6965653-6967250(-) (10)	NA	Q9XGA0	"Ribose-phosphate pyrophosphokinase 3, mitochondrial"	AT1G10700.1	phosphoribosyl pyrophosphate (PRPP) synthase 3 	LOC_Os01g52530.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g034640.1	Ribose-phosphate pyrophosphokinase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.157625.1.S1_at	A	A1TS	POPTR_0018s09570	POPTR_0018s09570 (10)	scaffold_18:10507460-10509020(+) (10)	NA	Q9LVC8	"Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial"	AT5G57300.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g74520.1	"methyltransferase domain containing protein, putative, expressed"	Medtr4g005810.1	UbiE/COQ5 methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.157633.1.S1_at	A	A1TS	POPTR_0003s05060	POPTR_0003s05060 (11)	scaffold_3:6252842-6253365(-) (11)	NA	Q0WVL7	Golgin candidate 5	AT1G79830.3	golgin candidate 5 	LOC_Os05g48620.1	"tRNA-binding arm, putative, expressed"	Medtr2g122720.1	"tRNA-binding arm; t-snare, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157639.1.S1_s_at	A	A1TS	POPTR_0003s15620	POPTR_0003s15620 (11)	scaffold_3:15363735-15363976(+) (11)	NA	NA	NA	AT4G20300.2	Protein of unknown function (DUF1639) 	LOC_Os01g48830.2	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157645.1.S1_at	A	A1MS	POPTR_0008s20800	POPTR_0008s20800 (11)	scaffold_8:14786795-14787259(-) (11)	NA	Q5R824	Carbohydrate kinase domain-containing protein	AT5G19150.2	pfkB-like carbohydrate kinase family protein 	LOC_Os11g17610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15766.2.S1_s_at	A	A1TS	POPTR_0014s07720	POPTR_0014s07720 (11)	scaffold_14:5789239-5789555(+) (11)	NA	Q9V3R6	tRNA-specific adenosine deaminase 1	AT1G01760.1	adenosine deaminases;RNA binding;RNA binding;adenosine deaminases 	LOC_Os04g58690.1	"tRNA-specific adenosine deaminase 1, putative, expressed"	Medtr6g031090.1	Adenosine deaminase/editase 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004000|adenosine deaminase activity||GO:0003723|RNA binding	NA
PtpAffx.157667.1.S1_s_at	A	A1TS	POPTR_0002s05170	POPTR_0002s05170 (11)	scaffold_2:3350509-3350887(+) (11)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1577.1.S1_at	A	A1TS	POPTR_0015s05520	POPTR_0015s05520 (11)	scaffold_15:5854980-5855319(-) (11)	NA	NA	NA	AT4G27750.1	binding 	LOC_Os06g03850.1	"impaired sucrose induction 1, putative, expressed"	Medtr4g107850.1	"impaired sucrose induction 1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157708.1.S1_at	A	A1TS	POPTR_0014s15920	POPTR_0014s15920 (11)	scaffold_14:12004194-12004843(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G35670.1	IQ-domain 33 	LOC_Os06g40850.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr5g092000.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157708.1.S1_s_at	A	A1TS	POPTR_0014s15920	POPTR_0014s15920 (11)	scaffold_14:12004071-12004727(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G35670.1	IQ-domain 33 	LOC_Os06g40850.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr5g092000.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157710.1.A1_at	A	A1MA	POPTR_0016s03080	POPTR_0016s03080 (9)	scaffold_16:1541530-1542069(+) (9)	POPTR_0016s03090 (6)	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.157717.1.S1_at	A	A1TS	POPTR_0025s00750	POPTR_0025s00750 (11)	scaffold_25:407297-407452(+) (11)	NA	Q3EAR7	Probable glycosyltransferase At3g42180	AT3G42180.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr8g121620.1	Exostosin-like 	NA	NA	GO:0016021|integral to membrane
PtpAffx.157722.1.S1_at	A	A1TS	POPTR_0012s04500	POPTR_0012s04500 (11)	scaffold_12:3788701-3789472(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.157729.1.S1_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (10)	scaffold_18:10244214-10246032(+) (10)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157729.1.S1_s_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (11)	scaffold_18:10244676-10245956(+) (11)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15773.1.A1_s_at	A	A1TS	POPTR_0014s06530	POPTR_0014s06530 (11)	scaffold_14:4955565-4956152(-) (11)	NA	Q9FQ09	ATP-dependent DNA helicase 2 subunit KU80	AT1G48050.1	Ku80 family protein 	LOC_Os03g63920.1	"KAP-2, putative, expressed"	Medtr4g024770.1	Ku 	GO:0006303|double-strand break repair via nonhomologous end joining||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004003|ATP-dependent DNA helicase activity	GO:0005634|nucleus
PtpAffx.157735.1.S1_at	A	A1TS	POPTR_0019s05890	POPTR_0019s05890 (11)	scaffold_19:6309883-6310722(+) (11)	NA	Q9FKJ0	F-box/kelch-repeat protein At5g60570	AT5G60570.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g52830.2	"OsFBK15 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g110510.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157739.1.S1_at	A	A1TS	POPTR_0006s07780	POPTR_0006s07780 (11)	scaffold_6:5691554-5693560(+) (11)	NA	B9HBA8	"Biotin carboxylase 1, chloroplastic"	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.157739.1.S1_s_at	A	A2TS	POPTR_0006s07780	POPTR_0006s07780 (11)//POPTR_0018s14250 (11)	scaffold_18:14502072-14504911(-) (11)//scaffold_6:5691490-5694437(+) (11)	NA	B9HBA8	"Biotin carboxylase 1, chloroplastic"	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.157768.1.S1_s_at	A	A1TS	POPTR_0003s06210	POPTR_0003s06210 (11)	scaffold_3:7672743-7673151(+) (11)	NA	NA	NA	AT3G13980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). 	LOC_Os03g07920.1	expressed protein	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15778.1.S1_at	A	A1TS	POPTR_0002s13100	POPTR_0002s13100 (11)	scaffold_2:9754105-9754627(-) (11)	NA	Q9SX97	Dof zinc finger protein DOF1.6	AT1G47655.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.157780.1.S1_at	A	A1TS	POPTR_0009s08990	POPTR_0009s08990 (10)	scaffold_9:8081942-8081977(-) (10)	NA	Q6YXH8	Cyclin-D4-1	AT1G70210.1	CYCLIN D1;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr5g033980.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157780.1.S1_s_at	A	A1TS	POPTR_0009s08990	POPTR_0009s08990 (11)	scaffold_9:8081963-8082625(-) (11)	NA	Q6YXH8	Cyclin-D4-1	AT1G70210.1	CYCLIN D1;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr5g033980.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157788.1.S1_s_at	A	A1TS	POPTR_0007s13080	POPTR_0007s13080 (11)	scaffold_7:13251691-13253314(-) (11)	NA	NA	NA	AT2G18245.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g04110.1	expressed protein	Medtr5g020580.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1578.1.S1_a_at	A	A1TS	POPTR_0006s05070	POPTR_0006s05070 (11)	scaffold_6:3523452-3523641(-) (11)	NA	Q8VZ42	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11	AT2G41835.1	"zinc finger (C2H2 type, AN1-like) family protein "	LOC_Os07g38240.1	"ZOS7-05 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1578.1.S1_at	A	A1TS	POPTR_0006s05070	POPTR_0006s05070 (11)	scaffold_6:3523257-3523773(-) (11)	NA	Q8VZ42	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11	AT2G41835.1	"zinc finger (C2H2 type, AN1-like) family protein "	LOC_Os07g38240.1	"ZOS7-05 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1578.2.S1_at	A	A1TS	POPTR_0006s05070	POPTR_0006s05070 (10)	scaffold_6:3522346-3523510(-) (10)	NA	Q8VZ42	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11	AT2G41835.1	"zinc finger (C2H2 type, AN1-like) family protein "	LOC_Os07g38240.1	"ZOS7-05 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.157804.1.S1_at	A	A1TS	POPTR_0004s16830	POPTR_0004s16830 (9)	scaffold_4:17181857-17184163(+) (9)	NA	P53800	Squalene synthase	AT4G34640.1	squalene synthase 1 	LOC_Os03g59040.2	"squalene synthetase, putative, expressed"	Medtr4g097000.1	Terpenoid synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.157807.1.S1_s_at	A	A1TS	POPTR_0008s03220	POPTR_0008s03220 (11)	scaffold_8:1687869-1688184(-) (11)	NA	NA	NA	AT5G04390.1	C2H2-type zinc finger family protein 	LOC_Os02g57790.1	ZOS2-19 - C2H2 zinc finger protein	Medtr4g076150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.157814.1.S1_s_at	A	A1MS	POPTR_0017s12700	POPTR_0017s12700 (11)	scaffold_17:12889726-12890187(+) (11)	NA	NA	NA	AT3G49645.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g16140.1	"FAD binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157820.1.S1_s_at	A	A1TS	POPTR_0004s01530	POPTR_0004s01530 (11)	scaffold_4:883121-883256(-) (11)	NA	Q9ZSA2	Calcium-dependent protein kinase 21	AT4G04720.1	calcium-dependent protein kinase 21 	LOC_Os07g33110.4	"CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g146720.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.157822.1.S1_at	A	A1TS	POPTR_0010s20240	POPTR_0010s20240 (10)	scaffold_10:17916099-17916674(+) (10)	NA	NA	NA	AT5G05840.1	Protein of unknown function (DUF620) 	LOC_Os03g16060.1	expressed protein	Medtr3g092680.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157825.1.S1_at	A	A1MS	POPTR_0018s13250	POPTR_0018s13250 (9)	scaffold_18:13642498-13642877(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157827.1.S1_s_at	A	A1MS	POPTR_0017s02590	POPTR_0017s02590 (11)	scaffold_17:1876254-1876692(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157830.1.S1_at	A	A1TS	POPTR_0004s00480	POPTR_0004s00480 (9)	scaffold_4:169128-169160(+) (9)	NA	Q9ZWQ8	"Plastid-lipid-associated protein, chloroplastic"	AT4G22240.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os09g04790.1	"PAP fibrillin family domain containing protein, expressed"	Medtr2g029130.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.157830.1.S1_s_at	A	A1TS	POPTR_0004s00480	POPTR_0004s00480 (11)	scaffold_4:169153-170726(+) (11)	NA	Q9ZWQ8	"Plastid-lipid-associated protein, chloroplastic"	AT4G22240.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os09g04790.1	"PAP fibrillin family domain containing protein, expressed"	Medtr2g029130.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.15785.1.S1_at	A	A1TS	POPTR_0006s07130	POPTR_0006s07130 (10)	scaffold_6:5120687-5121001(-) (10)	NA	NA	NA	AT4G29850.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os02g07980.1	expressed protein	Medtr2g043270.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15785.2.A1_a_at	A	A2TS	POPTR_0018s13340	POPTR_0018s13340 (11)//POPTR_0006s07130 (9)	scaffold_18:13697664-13697711(-) (11)//scaffold_6:5121704-5121738(-) (9)	NA	NA	NA	AT4G29850.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os02g07980.1	expressed protein	Medtr8g130380.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15785.2.A1_s_at	A	A1TS	POPTR_0018s13340	POPTR_0018s13340 (11)	scaffold_18:13696768-13697676(-) (11)	NA	NA	NA	AT4G29850.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os02g07980.1	expressed protein	Medtr8g130380.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157860.1.S1_at	A	A1TS	POPTR_0004s08800	POPTR_0004s08800 (10)	scaffold_4:7398201-7398756(+) (10)	POPTR_0005s14390 (6)	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT5G37790.1	Protein kinase superfamily protein 	LOC_Os03g13820.1	"protein kinase family protein, putative, expressed"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.157864.1.S1_s_at	A	A1TS	POPTR_0001s24540	POPTR_0001s24540 (11)	scaffold_1:23793237-23793529(+) (11)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.1	OBF-binding protein 3 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.157864.2.S1_at	A	A1TS	POPTR_0009s03490	POPTR_0009s03490 (10)	scaffold_9:4117875-4118354(+) (10)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.2	OBF-binding protein 3 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.157889.1.S1_a_at	A	A1TS	POPTR_0014s07750	POPTR_0014s07750 (11)	scaffold_14:5811052-5811193(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157889.1.S1_at	A	A1TS	POPTR_0014s07750	POPTR_0014s07750 (11)	scaffold_14:5810656-5811066(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157889.2.S1_at	A	A1TS	POPTR_0014s07750	POPTR_0014s07750 (11)	scaffold_14:5811145-5811386(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157898.1.S1_at	A	A1TS	POPTR_0018s08050	POPTR_0018s08050 (11)	scaffold_18:8834262-8836114(-) (11)	NA	Q9VR91	Probable E3 ubiquitin-protein ligase HERC2	AT5G11580.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os01g52630.1	"regulator of chromosome condensation, putative, expressed"	Medtr3g130590.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15790.1.S1_at	A	A1TS	POPTR_0007s12130	POPTR_0007s12130 (10)	scaffold_7:12460327-12461126(+) (10)	NA	O64827	Histone-lysine N-methyltransferase SUVR5	AT2G23740.2	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding 	LOC_Os02g47900.1	"SET domain protein SDG117, putative, expressed"	Medtr5g018800.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.157928.1.S1_at	A	A1TS	POPTR_0002s00660	POPTR_0002s00660 (11)	scaffold_2:293452-294383(-) (11)	NA	Q4R7R1	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0006694|steroid biosynthetic process||GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity	NA
PtpAffx.157928.2.S1_at	A	A1MS	POPTR_0002s00670	POPTR_0002s00670 (10)	scaffold_2:299123-299177(-) (10)	NA	Q4R7R1	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0006694|steroid biosynthetic process||GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity	NA
PtpAffx.157928.2.S1_s_at	A	A1TS	POPTR_0002s00670	POPTR_0002s00670 (11)	scaffold_2:299464-299633(-) (11)	NA	Q4R7R1	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0006694|steroid biosynthetic process||GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity	NA
PtpAffx.157935.1.S1_at	A	A2TS	POPTR_0017s12080	POPTR_0017s12080 (11)//POPTR_0004s12120 (9)	scaffold_17:12237491-12237907(+) (11)//scaffold_4:11057425-11057837(-) (9)	NA	Q93ZL5	Dof zinc finger protein DOF5.2	AT5G39660.2	cycling DOF factor 2 	LOC_Os03g07360.1	expressed protein	Medtr7g010180.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.15797.1.S1_at	A	A1TS	POPTR_0003s21480	POPTR_0003s21480 (11)	scaffold_3:19632284-19632723(+) (11)	NA	NA	NA	AT5G19875.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g27330.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr5g091690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157974.1.A1_at	A	A1TS	POPTR_0014s10560	POPTR_0014s10560 (9)	scaffold_14:7877554-7879050(+) (9)	NA	P55230	"Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic"	AT1G27680.1	ADPGLC-PPase large subunit 	LOC_Os07g13980.1	"glucose-1-phosphate adenylyltransferase large subunit, putative, expressed"	Medtr7g134380.1	"Nucleotidyl transferase; Glucose-1-phosphate adenylyltransferase, GlgD subunit "	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.157975.1.A1_at	A	A1TS	POPTR_0014s09250	POPTR_0014s09250 (11)	scaffold_14:6870062-6870374(+) (11)	NA	NA	NA	AT4G01037.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os05g49610.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr3g105870.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157983.1.A1_at	A	A1TS	POPTR_0009s14720	POPTR_0009s14720 (11)	scaffold_490:1106-1610(+) (11)//scaffold_9:11471518-11472026(+) (11)	NA	Q93ZB9	Fatty acyl-CoA reductase 3	AT4G33790.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157986.1.A1_at	A	A1MS	POPTR_0002s22380	POPTR_0002s22380 (11)	scaffold_2:19087470-19087906(-) (11)	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158005.1.A1_at	A	A1TS	POPTR_0001s10270	POPTR_0001s10270 (11)	scaffold_1:7958423-7959113(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT3G61610.1	Galactose mutarotase-like superfamily protein 	LOC_Os05g49430.1	"aldose 1-epimerase, putative, expressed"	Medtr5g009770.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.158009.1.A1_a_at	A	A1TS	POPTR_0001s02880	POPTR_0001s02880 (11)	scaffold_1:2271788-2271848(-) (11)	NA	Q9FUR2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 2"	AT4G18010.2	myo-inositol polyphosphate 5-phosphatase 2 	LOC_Os01g51890.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr5g014290.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15802.1.S1_at	A	A1TS	POPTR_0007s13700	POPTR_0007s13700 (11)	scaffold_7:13729677-13730185(+) (11)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os02g43150.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g021280.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.158028.1.A1_at	A	A1TS	POPTR_0006s17870	POPTR_0006s17870 (11)	scaffold_6:16087271-16087445(+) (11)	NA	Q9C5E7	"Pumilio homolog 6, chloroplastic"	AT4G25880.2	pumilio 6 	LOC_Os08g40830.3	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.158034.1.A1_at	A	A1TS	POPTR_0004s10510	POPTR_0004s10510 (9)	scaffold_4:9057560-9057629(+) (9)	NA	NA	NA	AT5G15880.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g02130.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158042.2.A1_a_at	A	A2TS	POPTR_0012s02950	POPTR_0012s02950 (11)//POPTR_0015s00860 (11)	scaffold_12:2387968-2388008(-) (11)//scaffold_15:500525-500565(-) (11)	NA	NA	NA	AT5G53660.1	growth-regulating factor 7 	LOC_Os03g51970.1	"growth-regulating factor, putative, expressed"	Medtr3g123080.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.158043.1.A1_at	A	A1TS	POPTR_0008s10080	POPTR_0008s10080 (10)	scaffold_8:6312222-6312623(+) (10)	NA	P81391	Myb-related protein 305	AT3G06490.1	myb domain protein 108 	LOC_Os03g20090.1	"MYB family transcription factor, putative, expressed"	Medtr2g037450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1581.1.A1_at	A	A1TS	POPTR_0004s05230	POPTR_0004s05230 (11)	scaffold_4:3980900-3981309(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT2G33990.1	IQ-domain 9 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15810.1.S1_at	A	A1TS	POPTR_0007s00900	POPTR_0007s00900 (10)	scaffold_7:467968-468346(-) (10)	NA	Q8S0F0	Formin-like protein 1	AT3G25500.1	formin homology 1 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr4g128070.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158107.1.S1_at	A	A1TS	POPTR_0001s36710	POPTR_0001s36710 (11)	scaffold_1:35424977-35425182(-) (11)	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.1	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.2	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr5g100690.1	"Dihydrolipoamide acetyltransferase, long form "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.158110.1.A1_s_at	A	A1TS	POPTR_0012s10230	POPTR_0012s10230 (11)	scaffold_12:11052652-11053071(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158132.1.A1_at	A	A1TS	POPTR_0001s07880	POPTR_0001s07880 (11)	scaffold_1:5965443-5966108(-) (11)	NA	Q8H1H9	Primary amine oxidase	AT1G62810.1	Copper amine oxidase family protein 	LOC_Os04g20164.1	"amine oxidase precursor, putative, expressed"	Medtr3g109760.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.158190.1.A1_s_at	A	A1TS	POPTR_0014s02310	POPTR_0014s02310 (11)	scaffold_14:1963999-1964236(-) (11)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.158194.1.A1_at	A	A1TS	POPTR_0016s04690	POPTR_0016s04690 (11)	scaffold_16:2696751-2697153(-) (9)//scaffold_16:2792805-2793207(-) (11)	NA	Q7F8R0	Zinc finger CCCH domain-containing protein 14	AT3G12130.1	KH domain-containing protein / zinc finger (CCCH type) family protein 	LOC_Os02g10080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g111840.1	"Zinc finger, CCCH-type; KH, type 1 "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.158197.1.A1_a_at	A	A1TS	POPTR_0011s11150	POPTR_0011s11150 (10)	scaffold_11:13874018-13874336(+) (10)	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78860.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23720.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.158198.1.A1_at	A	A1TS	POPTR_0013s10220	POPTR_0013s10220 (11)	scaffold_13:10228605-10228740(-) (11)	NA	Q8L5Z1	GDSL esterase/lipase At1g33811	AT1G33811.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g52770.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g013150.1	"GDSL-lipase 1, putative "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.158198.1.A1_s_at	A	A1TS	POPTR_0013s10220	POPTR_0013s10220 (11)	scaffold_13:10228748-10228876(-) (11)	NA	Q8L5Z1	GDSL esterase/lipase At1g33811	AT1G33811.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g52770.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g013150.1	"GDSL-lipase 1, putative "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.158215.1.A1_at	A	A1TS	POPTR_0018s01230	POPTR_0018s01230 (10)	scaffold_18:1201611-1202134(+) (10)	NA	Q9SLA1	Probable protein phosphatase 2C 22	AT2G25620.1	DNA-binding protein phosphatase 1 	LOC_Os06g39600.1	"protein phosphatase 2C, putative, expressed"	Medtr3g136310.2	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158231.1.A1_at	A	A2TS	POPTR_0002s23760	POPTR_0002s23760 (11)//POPTR_0002s23770 (11)	scaffold_2:21266273-21266741(+) (11)//scaffold_2:21272547-21273012(+) (11)	NA	Q9LR44	Indole-3-acetate beta-glucosyltransferase 1	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158250.1.S1_at	A	A1TS	POPTR_0005s19230	POPTR_0005s19230 (10)	scaffold_5:17946510-17946981(-) (10)	NA	Q498M4	WD repeat-containing protein 5	AT3G49660.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g51550.3	"WD repeat-containing protein 5, putative, expressed"	Medtr8g138930.1	"Protein will die slowly, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158256.1.A1_at	A	A1TS	POPTR_0001s05070	POPTR_0001s05070 (11)	scaffold_1:3898807-3899103(-) (11)	NA	Q7F8R0	Zinc finger CCCH domain-containing protein 14	AT3G12130.1	KH domain-containing protein / zinc finger (CCCH type) family protein 	LOC_Os02g10080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g111840.1	"Zinc finger, CCCH-type; KH, type 1 "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.158257.1.A1_s_at	A	A1TS	POPTR_0016s14340	POPTR_0016s14340 (10)	scaffold_16:13589081-13589562(+) (10)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT3G08760.1	Protein kinase superfamily protein 	LOC_Os01g60700.1	"serine/threonine-protein kinase NAK, putative, expressed"	Medtr7g080340.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158262.1.A1_at	A	A1TS	POPTR_0019s13410	POPTR_0019s13410 (9)	scaffold_19:14316374-14316925(-) (9)	NA	NA	NA	AT4G03420.1	Protein of unknown function (DUF789) 	LOC_Os10g35150.1	expressed protein	Medtr8g096450.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158267.1.A1_at	A	A1TS	POPTR_0010s00710	POPTR_0010s00710 (10)	scaffold_10:403503-403548(-) (10)	NA	Q0WW40	F-box/kelch-repeat protein At1g16250	AT1G16250.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15827.1.S1_at	A	A1TS	POPTR_0005s18470	POPTR_0005s18470 (11)	scaffold_5:16692390-16692813(-) (11)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G67200.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.158270.1.A1_at	A	A1TS	POPTR_0015s09920	POPTR_0015s09920 (11)	scaffold_15:10979296-10979815(-) (11)	NA	NA	NA	AT5G63160.1	BTB and TAZ domain protein 1 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr8g109870.1	"Zinc finger, TAZ-type; BTB/POZ; ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.158281.1.A1_s_at	A	A1TS	POPTR_0007s05880	POPTR_0007s05880 (11)	scaffold_7:4015725-4018006(-) (11)	NA	Q9SIE1	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase	AT2G22250.3	aspartate aminotransferase 	LOC_Os01g65090.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g140320.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.158291.1.A1_at	A	A1TS	POPTR_0004s00510	POPTR_0004s00510 (11)	scaffold_4:177480-177568(+) (11)	NA	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr2g025590.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158291.1.A1_s_at	A	A1TS	POPTR_0004s00510	POPTR_0004s00510 (11)	scaffold_4:177268-177494(+) (11)	NA	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr2g025590.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158296.2.A1_a_at	A	A1TS	POPTR_0003s15390	POPTR_0003s15390 (11)	scaffold_3:15175430-15176426(-) (11)	NA	Q9XI84	"Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT4G20130.1	plastid transcriptionally active 14 	LOC_Os05g50980.1	"SET domain containing protein, expressed"	Medtr4g089950.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15830.1.S1_at	A	A1MS	POPTR_0006s09590	POPTR_0006s09590 (9)	scaffold_6:7047179-7047654(+) (9)	NA	NA	NA	AT3G09210.1	plastid transcriptionally active 13 	LOC_Os03g61030.1	"transcription termination factor nusG family protein, expressed"	Medtr4g015580.1	Bacterial transcription antitermination protein NusG 	GO:0034645|cellular macromolecule biosynthetic process||GO:0032968|positive regulation of RNA elongation from RNA polymerase II promoter	GO:0003711|transcription elongation regulator activity	NA
PtpAffx.158306.1.A1_at	A	A1TS	POPTR_0005s18330	POPTR_0005s18330 (11)	scaffold_5:16474742-16475595(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT5G67130.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os09g02729.1	"phospholipase C, putative, expressed"	Medtr5g016790.1	"Carbohydrate kinase, FGGY; Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158313.1.A1_at	A	A1TS	POPTR_0012s08250	POPTR_0012s08250 (11)	scaffold_12:9300977-9301284(-) (11)	NA	NA	NA	AT5G62520.1	similar to RCD one 5 	LOC_Os04g57640.2	"RCD1, putative, expressed"	Medtr3g113780.1	"PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158349.1.S1_at	A	A1TS	POPTR_0009s10820	POPTR_0009s10820 (11)	scaffold_9:9182901-9184529(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT3G19130.1	RNA-binding protein 47B 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g129250.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.158349.2.S1_s_at	A	A2TS	POPTR_0009s10820	POPTR_0009s10820 (11)//POPTR_0004s15080 (10)	scaffold_4:15748671-15750031(+) (10)//scaffold_9:9183042-9184404(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT3G19130.1	RNA-binding protein 47B 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g129250.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.158358.1.S1_at	A	A1TS	POPTR_0004s21890	POPTR_0004s21890 (10)	scaffold_4:20864641-20865422(-) (11)	NA	Q9SZL7	Protein FAR1-RELATED SEQUENCE 9	AT4G38170.1	FAR1-related sequence 9 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr5g106890.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.158360.1.S1_s_at	A	A1TS	POPTR_0009s03990	POPTR_0009s03990 (11)	scaffold_9:4565047-4565362(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT3G46640.2	Homeodomain-like superfamily protein 	LOC_Os01g74020.1	"MYB family transcription factor, putative, expressed"	Medtr4g084700.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158361.1.S1_at	A	A1TS	POPTR_0018s07790	POPTR_0018s07790 (10)	scaffold_18:8592440-8592907(-) (10)	NA	Q96MB7	Putative nuclease HARBI1	AT4G29780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os01g40070.1	expressed protein	Medtr1g019300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158373.1.S1_at	A	A1TS	POPTR_0014s15800	POPTR_0014s15800 (10)	scaffold_14:11866064-11866660(+) (10)	POPTR_0014s15810 (7)	Q67ZU1	Triacylglycerol lipase 2	AT5G14180.1	Myzus persicae-induced lipase 1 	LOC_Os04g21160.1	"triacylglycerol lipase 1 precursor, putative"	Medtr5g092310.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.158377.1.S1_at	A	A1TS	POPTR_0017s13610	POPTR_0017s13610 (11)	scaffold_17:13724267-13726363(+) (11)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.15840.1.S1_at	A	A1TS	POPTR_0004s10880	POPTR_0004s10880 (10)	scaffold_4:9433849-9433882(-) (10)//scaffold_4:9446114-9446147(-) (10)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.15840.1.S1_s_at	A	A3TS	POPTR_0004s10880	POPTR_0004s10880 (11)//POPTR_0017s14470 (11)//POPTR_0004s10870 (10)	scaffold_17:14505027-14505268(-) (11)//scaffold_4:9432874-9434263(-) (10)//scaffold_4:9446366-9446607(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.158408.1.S1_s_at	A	A1TS	POPTR_0003s19770	POPTR_0003s19770 (11)	scaffold_3:18417183-18417545(+) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G13810.1	Glutaredoxin family protein 	LOC_Os03g24030.1	"glutaredoxin, putative, expressed"	Medtr8g039690.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.158411.1.S1_s_at	A	A1TS	POPTR_0008s20730	POPTR_0008s20730 (11)	scaffold_8:14712434-14712951(+) (11)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33400.1	"basic 7S globulin precursor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158416.1.S1_at	A	A1TS	POPTR_0019s00830	POPTR_0019s00830 (11)	scaffold_19:556446-558157(+) (11)	POPTR_0004s14590 (6)	P25406	Alcohol dehydrogenase 1B	AT5G63620.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os08g01760.1	"dehydrogenase, putative, expressed"	Medtr4g144410.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.158423.1.S1_at	A	A1TS	POPTR_0010s23630	POPTR_0010s23630 (10)	scaffold_10:20167351-20167856(+) (10)	NA	Q84K00	NAC domain-containing protein 78	AT3G10480.1	NAC domain containing protein 50 	LOC_Os08g44820.1	"no apical meristem protein, putative, expressed"	Medtr8g073410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.158426.1.S1_at	A	A1TS	POPTR_0002s03890	POPTR_0002s03890 (11)	scaffold_2:2441715-2443761(-) (11)	NA	Q8L4E7	SAP-like protein BP-73	AT1G06190.1	Rho termination factor 	LOC_Os03g08480.2	"rho termination factor, N-terminal domain containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006353|transcription termination	GO:0003715|transcription termination factor activity	NA
PtpAffx.158437.1.S1_at	A	A1TS	POPTR_0004s07810	POPTR_0004s07810 (11)	scaffold_4:6408015-6408463(+) (11)	NA	Q20EV4	Putative septum site-determining protein minD	AT5G24020.1	septum site-determining protein (MIND) 	LOC_Os06g01690.1	"septum site-determining protein minD, putative, expressed"	Medtr4g092230.1	"Septum site-determining protein minD, putative "	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
PtpAffx.158442.1.S1_at	A	A1TS	POPTR_0014s08290	POPTR_0014s08290 (11)	scaffold_14:6162018-6163322(-) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT4G00335.2	RING-H2 finger B1A 	LOC_Os11g18947.2	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_12.1	"Zinc finger, RING-type AC235567.1 46372-52293 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158448.1.S1_at	A	A1TS	POPTR_0011s07480	POPTR_0011s07480 (10)	scaffold_11:8325582-8326048(+) (10)	NA	P04256	Heterogeneous nuclear ribonucleoprotein A1	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g42820.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.158450.1.S1_at	A	A1TS	POPTR_0006s22700	POPTR_0006s22700 (11)	scaffold_6:21633201-21634404(+) (11)	NA	NA	NA	AT5G06130.2	chaperone protein dnaJ-related 	LOC_Os02g33149.1	"OR, putative, expressed"	Medtr4g041160.1	"OR, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158453.1.S1_at	A	A1TS	POPTR_0009s13790	POPTR_0009s13790 (11)	scaffold_9:10928186-10930462(-) (11)	NA	NA	NA	AT2G16800.1	high-affinity nickel-transport family protein 	LOC_Os06g02580.1	"high-affinity nickel-transport family protein, putative, expressed"	Medtr4g098410.1	High-affinity nickel-transporter 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	GO:0016021|integral to membrane
PtpAffx.158454.1.S1_s_at	A	A1TS	POPTR_0012s01690	POPTR_0012s01690 (11)	scaffold_12:1287602-1287941(+) (11)	NA	O65717	Cyclic nucleotide-gated ion channel 1	AT5G53130.1	cyclic nucleotide gated channel 1 	LOC_Os06g33570.1	"cyclic nucleotide-gated ion channel 1, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.158454.2.S1_at	A	A1TS	POPTR_0015s02090	POPTR_0015s02090 (11)	scaffold_15:1425812-1426187(-) (11)	NA	O65717	Cyclic nucleotide-gated ion channel 1	AT5G53130.1	cyclic nucleotide gated channel 1 	LOC_Os06g33570.1	"cyclic nucleotide-gated ion channel 1, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.158462.1.S1_at	A	A1TS	POPTR_0001s14120	POPTR_0001s14120 (9)	scaffold_1:11080790-11081741(-) (9)	NA	Q9T0H9	"UPF0016 protein 2, chloroplastic"	AT4G13590.1	Uncharacterized protein family (UPF0016) 	LOC_Os11g34180.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr5g009920.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
PtpAffx.158470.1.S1_s_at	A	A1TS	POPTR_0006s14950	POPTR_0006s14950 (11)	scaffold_6:12425073-12425828(-) (11)	NA	Q9LTR9	Glycylpeptide N-tetradecanoyltransferase 1	AT5G57020.1	myristoyl-CoA:protein N-myristoyltransferase 	LOC_Os01g51170.1	"glycylpeptide N-tetradecanoyltransferase 1, putative, expressed"	Medtr2g046620.1	Myristoyl-CoA:protein N-myristoyltransferase 	GO:0006499|N-terminal protein myristoylation	GO:0004379|glycylpeptide N-tetradecanoyltransferase activity	NA
PtpAffx.158485.1.S1_at	A	A1TS	POPTR_0001s38310	POPTR_0001s38310 (10)	scaffold_1:37396628-37397811(+) (10)	NA	Q9ZRA2	"Homogentisate 1,2-dioxygenase"	AT5G54080.2	"homogentisate 1,2-dioxygenase "	LOC_Os06g01360.1	"homogentisate 1,2-dioxygenase, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006570|tyrosine metabolic process||GO:0006559|L-phenylalanine catabolic process	"GO:0004411|""homogentisate 1,2-dioxygenase activity"""	NA
PtpAffx.158487.1.S1_s_at	A	A1TS	POPTR_0001s33670	POPTR_0001s33670 (11)	scaffold_1:31876351-31876547(+) (11)	NA	NA	NA	AT3G01930.2	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158491.2.S1_s_at	A	A2TS	POPTR_0014s00670	POPTR_0014s00670 (11)//POPTR_0014s01090 (11)	scaffold_14:621633-622828(+) (11)//scaffold_14:1014473-1015670(-) (11)	NA	Q9LHE5	Mitochondrial import receptor subunit TOM40 homolog 1	AT3G20000.1	translocase of the outer mitochondrial membrane 40 	LOC_Os03g20750.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr4g156410.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.158492.1.S1_at	A	A1TS	POPTR_0009s07710	POPTR_0009s07710 (11)	scaffold_9:7137553-7138786(-) (11)	NA	P49078	Asparagine synthetase [glutamine-hydrolyzing]	AT3G47340.1	glutamine-dependent asparagine synthase 1 	LOC_Os06g15420.1	"asparagine synthetase, putative, expressed"	Medtr5g079660.1	Asparagine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006529|asparagine biosynthetic process	GO:0004066|asparagine synthase (glutamine-hydrolyzing) activity	NA
PtpAffx.158517.1.S1_at	A	A1TS	POPTR_0005s00670	POPTR_0005s00670 (11)	scaffold_5:287699-289115(-) (11)	NA	P16638	ATP-citrate synthase	AT1G09430.1	ATP-citrate lyase A-3 	LOC_Os11g47330.1	"ATP-grasp domain containing protein, expressed"	Medtr5g035230.1	"ATP-grasp fold, succinyl-CoA synthetase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158518.1.S1_a_at	A	A1TS	POPTR_0016s12290	POPTR_0016s12290 (11)	scaffold_16:11638603-11638770(-) (11)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.158518.1.S1_at	A	A1MS	POPTR_0016s12290	POPTR_0016s12290 (9)	scaffold_16:11638281-11638568(-) (9)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.158518.2.S1_at	A	A1TS	POPTR_0016s12290	POPTR_0016s12290 (10)	scaffold_16:11636994-11638112(-) (10)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.158518.3.S1_a_at	A	A2TS	POPTR_0006s10080	POPTR_0016s12290 (11)//POPTR_0006s10080 (11)	scaffold_16:11637053-11637088(-) (11)//scaffold_6:7490163-7490198(-) (11)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.158518.3.S1_at	A	A1TS	POPTR_0006s10080	POPTR_0006s10080 (11)	scaffold_6:7490256-7492180(-) (11)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.158523.1.S1_s_at	A	A1TS	POPTR_0007s12270	POPTR_0007s12270 (11)	scaffold_7:12589911-12590237(-) (11)	NA	Q9S7G2	Probable galacturonosyltransferase-like 2	AT3G50760.1	galacturonosyltransferase-like 2 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.158527.1.S1_at	A	A1TS	POPTR_0002s22090	POPTR_0002s22090 (11)	scaffold_2:18793175-18793535(-) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr2g030170.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158529.1.S1_at	A	A1MS	POPTR_0010s10130	POPTR_0010s10130 (11)	scaffold_10:10707176-10707320(+) (11)	NA	Q4WVW4	Vacuolar protein 8	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.158529.1.S1_s_at	A	A2TS	POPTR_0010s10130	POPTR_0010s10130 (11)//POPTR_0008s14950 (9)	scaffold_10:10706236-10707171(+) (11)//scaffold_8:9958617-9959443(-) (9)	NA	Q4WVW4	Vacuolar protein 8	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.15853.1.S1_at	A	A1TS	POPTR_0019s07540	POPTR_0019s07540 (10)	scaffold_19:8585040-8585466(-) (10)	NA	Q42967	"Uroporphyrinogen decarboxylase, chloroplastic"	AT2G40490.1	Uroporphyrinogen decarboxylase 	LOC_Os03g21900.1	"uroporphyrinogen decarboxylase, putative, expressed"	Medtr3g097390.1	Uroporphyrinogen decarboxylase (URO-D) 	GO:0006779|porphyrin biosynthetic process	GO:0004853|uroporphyrinogen decarboxylase activity	NA
PtpAffx.15855.1.A1_at	A	A1TS	POPTR_0011s03550	POPTR_0011s03550 (10)	scaffold_11:3610470-3610953(-) (10)	NA	Q38732	"DAG protein, chloroplastic"	AT1G11430.1	"plastid developmental protein DAG, putative "	LOC_Os08g04450.3	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g011060.1	"DAG protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15855.2.A1_a_at	A	A1TS	POPTR_0006s03030	POPTR_0006s03030 (11)	scaffold_6:1911080-1911311(-) (11)	NA	NA	NA	AT3G56590.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g71220.1	"zinc finger protein, putative, expressed"	Medtr7g105620.1	"Putative RING zinc finger protein-, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158552.1.S1_s_at	A	A1TS	POPTR_0004s23530	POPTR_0004s23530 (11)	scaffold_4:22223138-22223584(+) (11)	NA	Q8BMJ2	"Leucyl-tRNA synthetase, cytoplasmic"	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os09g32650.1	"leucyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr7g006010.1	"Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.158559.1.S1_at	A	A1TS	POPTR_0009s15200	POPTR_0009s15200 (11)	scaffold_9:11810257-11810776(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT1G08230.2	Transmembrane amino acid transporter family protein 	LOC_Os01g63854.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158559.2.S1_a_at	A	A1TS	POPTR_0009s15200	POPTR_0009s15200 (11)	scaffold_9:11807895-11808032(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT1G08230.2	Transmembrane amino acid transporter family protein 	LOC_Os01g63854.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158567.1.S1_s_at	A	A1TS	POPTR_0010s15920	POPTR_0010s15920 (11)	scaffold_10:14986452-14987012(-) (11)	NA	Q9LSM9	Serine carboxypeptidase-like 33	AT3G17180.1	serine carboxypeptidase-like 33 	LOC_Os05g06660.1	"OsSCP26 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g014510.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.158569.1.S1_s_at	A	A1TS	POPTR_0005s18490	POPTR_0005s18490 (11)	scaffold_5:16730172-16730667(-) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.158573.1.S1_at	A	A1TS	POPTR_0013s06350	POPTR_0013s06350 (11)	scaffold_13:4896927-4897350(+) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT5G17790.1	zinc finger (Ran-binding) family protein 	LOC_Os01g59980.1	"zinc finger family protein, putative, expressed"	Medtr7g103850.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.158580.1.S1_at	A	A1TS	POPTR_0014s14010	POPTR_0014s14010 (9)	scaffold_14:10252911-10253602(-) (9)	NA	P46643	"Aspartate aminotransferase, mitochondrial"	AT2G30970.2	aspartate aminotransferase 1 	LOC_Os06g35540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.158593.1.S1_at	A	A1TS	POPTR_0015s00420	POPTR_0015s00420 (11)	scaffold_15:234264-234765(-) (11)	NA	Q9ZR09	Putative F-box/FBD/LRR-repeat protein At4g03220	AT4G03220.1	Protein with RNI-like/FBD-like domains 	LOC_Os10g03780.1	"OsFBX351 - F-box domain containing protein, expressed"	Medtr8g018890.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158597.1.S1_at	A	A1TS	POPTR_0016s10930	POPTR_0016s10930 (10)	scaffold_16:9324782-9324981(+) (10)	NA	Q3EBL9	Vacuolar protein-sorting-associated protein 37 homolog 2	AT2G36680.1	Modifier of rudimentary (Mod(r)) protein 	LOC_Os03g08770.1	"modifier of rudimentary protein, expressed"	Medtr7g124470.1	"Modifier of rudimentary, Modr "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158598.1.S1_s_at	A	A2TS	POPTR_0012s05060	POPTR_0012s05060 (11)//POPTR_0015s03900 (11)	scaffold_12:4559120-4559871(-) (11)//scaffold_15:3827282-3828058(+) (11)	NA	Q54NP8	Kinesin-related protein 4	AT1G18370.1	ATP binding microtubule motor family protein 	LOC_Os01g33040.1	"kinesin motor domain containing protein, expressed"	Medtr8g133190.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.1586.1.S1_at	A	A1TS	POPTR_0018s05800	POPTR_0018s05800 (11)	scaffold_18:5437977-5439254(-) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.158644.1.S1_at	A	A1TS	POPTR_0012s08630	POPTR_0012s08630 (10)	scaffold_12:9731269-9732021(-) (10)	NA	Q07123	Copper methylamine oxidase	AT2G42490.1	Copper amine oxidase family protein 	LOC_Os04g40040.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr3g114690.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.158656.1.A1_a_at	A	A2TS	POPTR_0006s04890	POPTR_0016s05640 (11)//POPTR_0006s04890 (11)	scaffold_16:3550953-3551089(+) (11)//scaffold_6:3422466-3422602(-) (11)	POPTR_0006s04880 (7)	NA	NA	AT2G41810.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158656.1.A1_at	A	A1TS	POPTR_0016s05640	POPTR_0016s05640 (11)	scaffold_16:3550979-3551441(+) (11)	NA	NA	NA	AT2G41810.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158679.1.S1_at	A	A1TS	POPTR_0002s00350	POPTR_0002s00350 (10)	scaffold_2:93541-94050(+) (10)	NA	Q9FIH9	Calcium-binding protein CML37	AT5G42380.1	calmodulin like 37 	LOC_Os01g72530.1	"OsCML31 - Calmodulin-related calcium sensor protein, expressed"	Medtr6g025320.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158704.1.S1_at	A	A1TS	POPTR_0002s01310	POPTR_0002s01310 (11)	scaffold_2:694497-695724(+) (11)	NA	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT4G35230.1	BR-signaling kinase 1 	LOC_Os03g04050.1	"protein kinase family protein, putative, expressed"	Medtr5g106610.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158710.1.S1_s_at	A	A1TS	POPTR_0014s09180	POPTR_0014s09180 (10)	scaffold_14:6807970-6808396(+) (10)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008800.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15872.1.A1_at	A	A1TS	POPTR_0017s05620	POPTR_0017s05620 (11)	scaffold_17:4405565-4406429(-) (11)	NA	Q6UPE1	"Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial"	AT2G43400.1	electron-transfer flavoprotein:ubiquinone oxidoreductase 	LOC_Os10g37210.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr2g118420.1	Electron transfer flavoprotein-ubiquinone oxidoreductase 	GO:0055114|oxidation reduction	GO:0004174|electron-transferring-flavoprotein dehydrogenase activity	NA
PtpAffx.158724.1.S1_at	A	A1TS	POPTR_0014s12360	POPTR_0014s12360 (9)	scaffold_14:9124081-9127112(+) (11)	NA	Q99685	Monoglyceride lipase	AT3G62860.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g29974.1	"lipase, putative, expressed"	Medtr8g068300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158726.1.S1_at	A	A1TS	POPTR_0001s13790	POPTR_0001s13790 (11)	scaffold_1:10860889-10861635(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.158732.1.S1_at	A	A1TS	POPTR_0012s01140	POPTR_0012s01140 (11)	scaffold_12:793429-794827(+) (11)	NA	Q40546	"Pyruvate kinase isozyme G, chloroplastic"	AT5G52920.1	plastidic pyruvate kinase beta subunit 1 	LOC_Os01g47080.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.158738.1.S1_at	A	A1TS	POPTR_0005s22370	POPTR_0005s22370 (11)	scaffold_5:21328990-21329327(+) (11)	NA	P08965	Meiosis protein mei2	AT1G29400.2	MEI2-like protein 5 	LOC_Os02g48790.4	"AML1, putative, expressed"	Medtr2g056620.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.158743.1.S1_s_at	A	A1TS	POPTR_0002s25830	POPTR_0002s25830 (11)	scaffold_2:22873265-22876071(-) (11)	NA	Q38829	Auxin-responsive protein IAA11	AT4G28640.3	indole-3-acetic acid inducible 11 	LOC_Os02g57250.1	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr5g032240.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.15875.1.A1_at	A	A1TS	POPTR_0015s09560	POPTR_0015s09560 (11)	scaffold_15:10751417-10751933(+) (11)	NA	Q5RC94	Next to BRCA1 gene 1 protein	AT4G24690.1	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein 	LOC_Os02g38050.3	"joka2, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.158765.1.S1_a_at	A	A2TS	POPTR_0005s07150	POPTR_0005s07150 (11)//POPTR_0007s04880 (11)	scaffold_5:4804940-4805978(+) (11)//scaffold_7:3067950-3069006(+) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158765.1.S1_at	A	A1TS	POPTR_0005s07150	POPTR_0005s07150 (11)	scaffold_5:4804507-4805187(+) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158765.2.S1_s_at	A	A1TS	POPTR_0005s07150	POPTR_0005s07150 (11)	scaffold_5:4809906-4810156(+) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158768.1.S1_at	A	A1TS	POPTR_0001s33790	POPTR_0001s33790 (11)	scaffold_1:31955104-31955508(+) (11)	NA	P37707	B2 protein	AT3G27090.1	DCD (Development and Cell Death) domain protein 	LOC_Os05g41930.3	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158769.1.S1_s_at	A	A1TS	POPTR_0010s23960	POPTR_0010s23960 (11)	scaffold_10:20383247-20385209(+) (11)	NA	NA	NA	AT3G52230.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158772.1.S1_s_at	A	A1TS	POPTR_0018s02840	POPTR_0018s02840 (11)	scaffold_18:2500604-2502937(+) (11)	NA	Q6K687	Zinc finger CCCH domain-containing protein 18	AT2G24830.1	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein 	LOC_Os02g55000.1	"zinc finger CCCH-type with G patch domain-containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.158774.2.S1_at	A	A1TS	POPTR_0016s08470	POPTR_0016s08470 (11)	scaffold_16:6274262-6274316(-) (11)	NA	Q54IF9	Myb-like protein G	AT3G09600.1	Homeodomain-like superfamily protein 	LOC_Os02g45670.1	"myb-like DNA-binding domain containing protein, expressed"	AC235567_21.1	Homeodomain-related AC235567.1 79376-72886 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158774.2.S1_s_at	A	A1TS	POPTR_0016s08470	POPTR_0016s08470 (11)	scaffold_16:6273293-6273573(-) (11)	NA	Q54IF9	Myb-like protein G	AT3G09600.1	Homeodomain-like superfamily protein 	LOC_Os02g45670.1	"myb-like DNA-binding domain containing protein, expressed"	AC235567_21.1	Homeodomain-related AC235567.1 79376-72886 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158776.1.S1_s_at	A	A1TS	POPTR_0012s10230	POPTR_0012s10230 (11)	scaffold_12:11056458-11057606(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158779.1.S1_at	A	A1TS	POPTR_0010s21010	POPTR_0010s21010 (11)	scaffold_10:18444015-18444320(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158783.1.S1_at	A	A1TS	POPTR_0006s23110	POPTR_0006s23110 (11)	scaffold_6:21961265-21961773(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158799.1.S1_s_at	A	A1TS	POPTR_0007s12540	POPTR_0007s12540 (11)	scaffold_7:12826218-12828228(+) (11)	NA	Q9NVU0	DNA-directed RNA polymerase III subunit RPC5	AT5G49530.1	SIN-like family protein 	LOC_Os08g16780.1	"sin-like protein conserved region containing protein, expressed"	Medtr5g026170.1	Sin-like protein conserved region 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.158803.1.S1_at	A	A1TS	POPTR_0008s12090	POPTR_0008s12090 (11)	scaffold_8:7803302-7803469(-) (11)	NA	NA	NA	AT1G68440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr5g067220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158803.1.S1_s_at	A	A1TS	POPTR_0008s12090	POPTR_0008s12090 (9)	scaffold_8:7803019-7803253(-) (9)	NA	NA	NA	AT1G68440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr5g067220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158812.1.S1_s_at	A	A1TS	POPTR_0002s07740	POPTR_0002s07740 (11)	scaffold_2:5302922-5303696(-) (11)	NA	Q6PDK2	Histone-lysine N-methyltransferase MLL2	AT1G77250.1	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os08g01420.1	"PHD-finger domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158814.1.S1_at	A	A1TS	POPTR_0014s03530	POPTR_0014s03530 (11)	scaffold_14:2828086-2828889(-) (11)	NA	Q9S7T8	Serpin-ZX	AT1G47710.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41438.1	"serpin domain containing protein, putative, expressed"	Medtr3g148650.1	"Proteinase inhibitor I4, serpin "	NA	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.158815.1.S1_at	A	A1TS	POPTR_0014s00330	POPTR_0014s00330 (11)	scaffold_14:136683-137606(+) (11)	NA	NA	NA	AT3G13062.2	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os02g26860.1	"START domain containing protein, putative, expressed"	Medtr4g163310.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158820.1.S1_s_at	A	A1TS	POPTR_0004s17020	POPTR_0004s17020 (11)	scaffold_4:17372695-17373210(-) (11)	NA	Q43075	Arginine decarboxylase	AT4G34710.2	arginine decarboxylase 2 	LOC_Os06g04070.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr4g097390.1	Arginine decarboxylase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.158827.2.S1_a_at	A	A1TS	POPTR_0011s07420	POPTR_0011s07420 (11)	scaffold_11:8280001-8281486(-) (11)	NA	Q08448	Putative lipase YOR059C	AT1G29120.2	Hydrolase-like protein family 	LOC_Os06g06080.1	"serine esterase family protein, putative, expressed"	Medtr4g134610.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15883.1.S1_at	A	A1TS	POPTR_0012s13330	POPTR_0012s13330 (11)	scaffold_12:13530671-13531911(+) (11)	NA	Q55AD9	ADP-ribosylation factor-like protein 5	AT3G22950.2	ADP-ribosylation factor C1 	LOC_Os11g37640.1	"ADP-ribosylation factor, putative, expressed"	Medtr1g106180.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.158831.1.S1_at	A	A1TS	POPTR_0001s41900	POPTR_0001s41900 (11)	scaffold_1:41611543-41612156(-) (11)	NA	Q13574	Diacylglycerol kinase zeta	AT2G20900.2	diacylglycerol kinase 5 	LOC_Os04g54200.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.158844.1.S1_at	A	A1TS	POPTR_0016s09070	POPTR_0016s09070 (11)	scaffold_16:6965008-6967991(+) (11)	NA	P49299	"Citrate synthase, glyoxysomal"	AT3G58750.1	citrate synthase 2 	LOC_Os02g13840.1	"citrate synthase, putative, expressed"	Medtr5g099240.1	Citrate synthase 	GO:0044262|cellular carbohydrate metabolic process	"GO:0046912|""transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer"""	NA
PtpAffx.158876.1.S1_at	A	A1TS	POPTR_0006s07450	POPTR_0006s07450 (10)	scaffold_6:5403343-5406473(+) (10)	NA	NA	NA	AT2G19270.1	"CONTAINS InterPro DOMAIN/s: Mitotic checkpoint protein PRCC, C-terminal (InterPro:IPR018800); Has 930 Blast hits to 533 proteins in 146 species: Archae - 0; Bacteria - 18; Metazoa - 327; Fungi - 143; Plants - 61; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink). "	LOC_Os02g07920.1	expressed protein	Medtr8g129770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158884.1.S1_at	A	A1MS	POPTR_0006s19660	POPTR_0006s19660 (10)	scaffold_6:18691386-18691687(+) (10)	NA	NA	NA	NA	NA	LOC_Os06g44200.3	"ZOS6-06 - C2H2 zinc finger protein, expressed"	Medtr8g145170.1	"Zinc finger, U1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158888.1.S1_at	A	A1TS	POPTR_0017s11420	POPTR_0017s11420 (11)	scaffold_17:11183557-11184407(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os05g51420.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g113260.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158888.1.S1_s_at	A	A1TS	POPTR_0017s11420	POPTR_0017s11420 (11)	scaffold_17:11183575-11184611(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os05g51420.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g113260.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1589.1.S1_a_at	A	A1TS	POPTR_0016s12210	POPTR_0016s12210 (11)	scaffold_16:11550140-11550401(+) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1589.1.S1_at	A	A1TS	POPTR_0016s12210	POPTR_0016s12210 (11)	scaffold_16:11550358-11550525(+) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15891.1.A1_at	A	A1TS	POPTR_0019s04140	POPTR_0019s04140 (10)	scaffold_19:4243828-4244124(+) (10)	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g022900.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.158913.1.S1_s_at	A	A1TS	POPTR_0014s12860	POPTR_0014s12860 (11)	scaffold_14:9476740-9477498(-) (11)	NA	Q7ZV00	OTU domain-containing protein 6B	AT3G62940.3	Cysteine proteinases superfamily protein 	LOC_Os04g52850.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr7g129940.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158921.1.S1_at	A	A1TS	POPTR_0004s21830	POPTR_0004s21830 (11)	scaffold_4:20825278-20825402(+) (11)	NA	O64966	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g024810.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
PtpAffx.158921.1.S1_s_at	A	A2TS	POPTR_0004s21830	POPTR_0004s21830 (11)//POPTR_0009s17090 (11)	scaffold_4:20824949-20825425(+) (11)//scaffold_9:12867725-12868197(+) (11)	NA	O64966	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g024810.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
PtpAffx.158934.1.S1_s_at	A	A1TS	POPTR_0016s12570	POPTR_0016s12570 (11)	scaffold_16:11989204-11990977(-) (11)	NA	Q6GM29	Phosphatidylinositide phosphatase SAC1	AT3G51830.1	SAC domain-containing protein 8 	LOC_Os03g18080.2	"SacI homology domain containing protein, expressed"	Medtr5g023860.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158940.1.S1_at	A	A1TS	POPTR_0015s11640	POPTR_0015s11640 (11)	scaffold_15:12193159-12193578(-) (11)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
PtpAffx.158940.1.S1_s_at	A	A2TS	POPTR_0012s10770	POPTR_0015s11640 (11)//POPTR_0012s10770 (11)	scaffold_12:11459351-11460326(-) (11)//scaffold_15:12192449-12193639(-) (11)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
PtpAffx.158944.1.S1_s_at	A	A1TS	POPTR_0030s00300	POPTR_0030s00300 (11)	scaffold_30:88230-88541(-) (11)	POPTR_0005s04910 (6)	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.158977.1.S1_at	A	A1TS	POPTR_0001s25100	POPTR_0001s25100 (11)	scaffold_1:24330561-24331757(-) (11)	NA	Q0WWW9	"D-xylose-proton symporter-like 3, chloroplastic"	AT5G59250.1	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.158987.1.A1_at	A	A1TS	POPTR_0013s01290	POPTR_0013s01290 (11)	scaffold_13:722418-722740(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158988.1.S1_at	A	A1TS	POPTR_0002s00200	POPTR_0002s00200 (10)	scaffold_2:7132-7889(-) (10)	NA	Q9MA15	"Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic"	AT1G79600.1	Protein kinase superfamily protein 	LOC_Os05g25840.3	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158993.1.S1_at	A	A1TS	POPTR_0010s25010	POPTR_0010s25010 (10)	scaffold_10:20901595-20902674(+) (10)	NA	Q7SYN4	Cytosolic 5'-nucleotidase 3	AT2G38680.1	5'-nucleotidases;magnesium ion binding 	LOC_Os03g44660.1	"cytosolic 5-nucleotidase III, putative, expressed"	Medtr1g112120.1	HAD-superfamily subfamily IE hydrolase 	NA	GO:0008253|5'-nucleotidase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
PtpAffx.15900.1.S1_s_at	A	A1TS	POPTR_0006s05500	POPTR_0006s05500 (11)	scaffold_6:3880608-3881082(-) (11)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15900.2.S1_at	A	A1TS	POPTR_0016s05240	POPTR_0016s05240 (10)	scaffold_16:3194145-3194693(+) (10)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os12g41180.1	"LSTK-1-like kinase, putative, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159018.1.S1_at	A	A1TS	POPTR_0006s09670	POPTR_0006s09670 (11)	scaffold_6:7105092-7107298(+) (11)	NA	Q5ZHZ4	E3 ubiquitin-protein ligase Hakai	AT5G01160.1	RING/U-box superfamily protein 	LOC_Os10g35190.1	"ZOS10-06 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.159020.1.S1_s_at	A	A1TS	POPTR_0019s07270	POPTR_0019s07270 (11)	scaffold_19:8249366-8249877(+) (11)	NA	P59278	Uncharacterized protein At1g51745	AT3G03140.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os02g47170.1	expressed protein	Medtr4g106850.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159025.1.A1_s_at	A	A1TS	POPTR_0006s24420	POPTR_0006s24420 (11)	scaffold_6:23037969-23039349(+) (11)	NA	O80983	"ATP-dependent zinc metalloprotease FTSH 4, mitochondrial"	AT2G26140.1	FTSH protease 4 	LOC_Os01g39260.1	"OsFtsH5  FtsH protease, homologue of AtFtsH4, expressed"	Medtr3g139920.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.159029.1.A1_s_at	A	A1TS	POPTR_0014s01400	POPTR_0014s01400 (11)	scaffold_14:1363575-1363944(-) (11)	NA	Q801S4	Uncharacterized protein C22orf9 homolog	AT1G59520.1	CW7 	LOC_Os07g14514.3	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159029.2.A1_s_at	A	A1TS	POPTR_0014s01400	POPTR_0014s01400 (11)	scaffold_14:1360486-1361020(-) (11)	NA	Q801S4	Uncharacterized protein C22orf9 homolog	AT1G59520.1	CW7 	LOC_Os07g14514.3	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159032.2.S1_at	A	A1MS	POPTR_0008s08080	POPTR_0008s08080 (9)	scaffold_8:5032638-5033502(+) (9)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT1G79380.1	Ca(2)-dependent phospholipid-binding protein (Copine) family 	LOC_Os08g04130.1	"copine-6, putative, expressed"	Medtr6g093150.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.159032.3.S1_a_at	A	A1TS	POPTR_0010s18200	POPTR_0010s18200 (11)	scaffold_10:16542002-16546516(-) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT1G79380.1	Ca(2)-dependent phospholipid-binding protein (Copine) family 	LOC_Os08g04130.1	"copine-6, putative, expressed"	Medtr6g093150.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159044.1.S1_at	A	A1TS	POPTR_0019s04840	POPTR_0019s04840 (11)	scaffold_19:5072792-5073129(+) (11)	NA	O75175	CCR4-NOT transcription complex subunit 3	AT5G18230.1	transcription regulator NOT2/NOT3/NOT5 family protein 	LOC_Os03g44900.1	"CCR4-NOT transcription factor, putative, expressed"	Medtr7g100260.1	"Not CCR4-Not complex component, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.159051.1.S1_s_at	A	A1TS	POPTR_0005s25950	POPTR_0005s25950 (11)	scaffold_5:24132510-24134370(+) (11)	NA	NA	NA	AT1G75710.1	C2H2-like zinc finger protein 	LOC_Os04g59380.1	"ZOS4-14 - C2H2 zinc finger protein, expressed"	Medtr1g030900.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159053.1.S1_at	A	A1TS	POPTR_0006s06860	POPTR_0006s06860 (11)	scaffold_6:4966326-4966626(-) (11)	NA	Q9NVG8	TBC1 domain family member 13	AT4G13730.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g68010.1	"TBC domain containing protein, expressed"	Medtr8g120430.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.159057.1.S1_at	A	A1TS	POPTR_0006s29410	POPTR_0006s29410 (11)	scaffold_6:26779360-26779806(+) (11)	POPTR_0018s04080 (7)	Q8CGZ0	Calcium homeostasis endoplasmic reticulum protein	AT4G31200.1	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein 	LOC_Os06g46880.1	"surp module family protein, putative, expressed"	Medtr1g117220.1	SWAP/Surp; Regulation of nuclear pre-mRNA protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.159062.1.S1_s_at	A	A1TS	POPTR_0008s15980	POPTR_0008s15980 (11)	scaffold_8:10665362-10666119(+) (11)	NA	NA	NA	AT3G22990.1	ARM repeat superfamily protein 	LOC_Os07g41900.1	expressed protein	AC233668_13.1	Armadillo-like helical AC233668.2 41900-46754 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159070.1.S1_s_at	A	A2TS	POPTR_0001s00640	POPTR_0001s00640 (11)//POPTR_0003s10840 (11)	scaffold_1:554577-555093(+) (11)//scaffold_3:11704394-11704861(-) (11)	NA	Q5R8W6	Luc7-like protein 3	AT5G51410.3	LUC7 N_terminus domain-containing protein 	LOC_Os07g27300.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159070.2.S1_at	A	A1MS	POPTR_0003s10840	POPTR_0003s10840 (10)	scaffold_3:11704145-11704378(-) (10)	NA	Q5R8W6	Luc7-like protein 3	AT5G51410.3	LUC7 N_terminus domain-containing protein 	LOC_Os07g27300.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159072.1.S1_at	A	A1TS	POPTR_0015s06120	POPTR_0015s06120 (11)	scaffold_15:6403554-6404906(+) (11)	NA	Q7SXW0	Solute carrier family 25 member 39	AT4G27940.1	manganese tracking factor for mitochondrial SOD2 	LOC_Os08g29720.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g124670.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15908.1.S1_at	A	A1TS	POPTR_0012s11330	POPTR_0012s11330 (11)	scaffold_12:11811730-11812220(+) (11)	NA	Q9FLT3	Germin-like protein subfamily 3 member 4	AT5G61750.1	RmlC-like cupins superfamily protein 	LOC_Os11g33110.1	"Cupin domain containing protein, expressed"	Medtr3g143310.1	Cupin region 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.159092.1.S1_a_at	A	A1TS	POPTR_0017s07220	POPTR_0017s07220 (11)	scaffold_17:5622465-5623341(+) (11)	NA	P17067	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.4	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr2g009540.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.159092.1.S1_at	A	A1TS	POPTR_0017s07220	POPTR_0017s07220 (9)	scaffold_17:5622237-5623599(+) (9)	NA	P17067	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.4	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr2g009540.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.15910.1.S1_a_at	A	A1TS	POPTR_0001s25220	POPTR_0001s25220 (11)	scaffold_1:24407213-24407862(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159104.1.S1_at	A	A1TS	POPTR_0008s05610	POPTR_0008s05610 (11)	scaffold_8:3255124-3255612(-) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT3G55430.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.159110.1.S1_at	A	A1TS	POPTR_0002s25600	POPTR_0002s25600 (9)	scaffold_2:22688912-22689522(+) (9)	POPTR_0014s18620 (7)	Q9C0C7	Activating molecule in BECN1-regulated autophagy protein 1	AT1G04140.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g18820.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g117620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159115.1.A1_at	A	A1TS	POPTR_0008s16530	POPTR_0008s16530 (11)	scaffold_8:11095745-11096308(+) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159119.1.S1_s_at	A	A1TS	POPTR_0010s10000	POPTR_0010s10000 (11)	scaffold_10:10588102-10588518(-) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159129.1.S1_at	A	A1TS	POPTR_0003s07610	POPTR_0003s07610 (10)	scaffold_3:9152456-9152940(+) (10)	NA	P49307	Rhizopine catabolism protein mocA	AT4G17370.1	Oxidoreductase family protein 	LOC_Os08g05280.1	"oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed"	Medtr8g105540.1	Bacterial glucose-fructose oxidoreductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.159135.1.S1_at	A	A1TS	POPTR_0010s11330	POPTR_0010s11330 (11)	scaffold_10:11627156-11627763(-) (11)	NA	Q39263	Zinc finger protein 4	AT1G66140.1	zinc finger protein 4 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	CU633465_4.1	"Zinc finger, C2H2-type CU633465.7 18485-19791 F EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.159138.1.A1_at	A	A1TS	POPTR_0004s14230	POPTR_0004s14230 (10)	scaffold_4:14709623-14710068(+) (10)	NA	Q9C810	PHD finger protein At1g33420	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g65600.1	"PHD-finger domain containing protein, putative, expressed"	Medtr4g041260.1	"Protein of unknown function UPF0054; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159139.1.S1_at	A	A1MS	POPTR_0011s09190	POPTR_0011s09190 (9)	scaffold_11:11354997-11355585(-) (9)	NA	O43196	MutS protein homolog 5	AT3G20475.1	MUTS-homologue 5 	LOC_Os05g41880.1	"mutS domain V family protein, expressed"	Medtr5g100500.1	MutS III 	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.159160.1.S1_at	A	A1MS	POPTR_0001s33750	POPTR_0001s33750 (11)	scaffold_1:31914265-31915586(+) (11)	NA	Q9CLV5	Naphthoate synthase	AT1G60550.1	enoyl-CoA hydratase/isomerase D 	LOC_Os01g47350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g074190.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.159171.1.S1_at	A	A1TS	POPTR_0003s05500	POPTR_0003s05500 (10)	scaffold_3:6796792-6797792(+) (10)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.2	"coatomer subunit beta, putative, expressed"	AC234703_19.2	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.159172.1.S1_s_at	A	A1TS	POPTR_0006s03850	POPTR_0006s03850 (11)	scaffold_6:2582883-2586555(+) (11)	NA	Q5ZJQ8	Ubiquitin-associated domain-containing protein 2	AT3G56740.1	Ubiquitin-associated (UBA) protein 	LOC_Os01g16330.1	"OsRhmbd2 - Putative Rhomboid homologue, expressed"	Medtr7g106540.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159172.2.S1_at	A	A1TS	POPTR_0016s03500	POPTR_0016s03500 (11)	scaffold_16:1871387-1873895(-) (11)	NA	Q5ZJQ8	Ubiquitin-associated domain-containing protein 2	AT2G41160.1	Ubiquitin-associated (UBA) protein 	LOC_Os01g16330.1	"OsRhmbd2 - Putative Rhomboid homologue, expressed"	Medtr7g106540.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159180.1.S1_at	A	A1TS	POPTR_0001s46550	POPTR_0001s46550 (10)	scaffold_1:46924692-46925400(+) (10)	NA	NA	NA	AT1G30680.1	toprim domain-containing protein 	LOC_Os06g45980.1	"toprim domain-containing protein, putative, expressed"	Medtr5g106820.1	TOPRIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15919.1.S1_s_at	A	A1TS	POPTR_0016s14410	POPTR_0016s14410 (11)	scaffold_16:13621451-13621775(-) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT5G01890.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g080410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.159193.1.S1_at	A	A1TS	POPTR_0012s10630	POPTR_0012s10630 (11)	scaffold_12:11349987-11350793(+) (10)	NA	P97363	Serine palmitoyltransferase 2	AT5G23670.2	long chain base2 	LOC_Os11g31640.1	"serine palmitoyltransferase 2, putative, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.1592.1.S1_at	A	A1TS	POPTR_0008s05600	POPTR_0008s05600 (11)	scaffold_8:3251843-3252795(-) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT3G55430.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.159201.1.S1_at	A	A1MS	POPTR_0009s11190	POPTR_0009s11190 (10)	scaffold_9:9382705-9383356(+) (10)	NA	NA	NA	AT2G26500.1	"cytochrome b6f complex subunit (petM), putative "	LOC_Os03g55720.2	"cytochrome b6f complex subunit, putative, expressed"	NA	NA	NA	NA	GO:0009512|cytochrome b6f complex
PtpAffx.159205.1.A1_at	A	A1TS	POPTR_0008s04760	POPTR_0008s04760 (10)	scaffold_8:2739730-2740220(-) (10)//scaffold_8:2748878-2749368(-) (10)	POPTR_0008s04750 (8)	NA	NA	AT3G12345.1	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g28950.1	expressed protein	Medtr1g146160.1	"FKBP-type peptidyl-prolyl cis-trans isomerase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159234.1.A1_at	A	A1TS	POPTR_0006s03250	POPTR_0006s03250 (11)	scaffold_6:2057232-2057596(-) (11)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	LOC_Os05g33960.1	"peptide transporter PTR2, putative, expressed"	Medtr7g105690.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.15925.1.S1_at	A	A1TS	POPTR_0005s17030	POPTR_0005s17030 (11)	scaffold_5:14128969-14129103(+) (11)	NA	NA	NA	AT1G78170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g09120.1	expressed protein	Medtr5g072600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15925.2.S1_at	A	A1TS	POPTR_0002s09660	POPTR_0002s09660 (10)	scaffold_1140:144-607(+) (11)//scaffold_2:6921562-6922021(+) (10)	POPTR_1140s00200 (7)	NA	NA	AT1G78170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g09120.1	expressed protein	Medtr5g072600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159267.1.A1_at	A	A1TS	POPTR_0002s03450	POPTR_0002s03450 (11)	scaffold_2:2137475-2137734(-) (11)	NA	NA	NA	AT5G66440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159290.1.A1_at	A	A1TS	POPTR_0016s04620	POPTR_0016s04620 (9)	scaffold_16:2715392-2715862(+) (9)	NA	NA	NA	AT3G57990.1	unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). 	LOC_Os09g31458.1	expressed protein	Medtr5g014330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159299.1.A1_at	A	A1TS	POPTR_0004s17400	POPTR_0004s17400 (11)	scaffold_4:17608391-17609033(-) (11)	NA	Q0WLC6	"Pentatricopeptide repeat-containing protein At4g34830, chloroplastic"	AT4G34830.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g10170.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g098380.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159309.1.A1_at	A	A1TS	POPTR_0005s15850	POPTR_0005s15850 (11)	scaffold_5:12481955-12483351(-) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT1G77660.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os09g28060.1	"MORN repeat domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159323.1.A1_at	A	A1TS	POPTR_0008s04660	POPTR_0008s04660 (11)	scaffold_8:2671479-2672509(-) (11)	NA	Q8H8U5	Protein IN2-1 homolog B	AT3G55040.1	glutathione transferase lambda 2 	LOC_Os03g17470.1	"IN2-1 protein, putative, expressed"	Medtr1g146570.1	"Glutathione S-transferase, C-terminal-like; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159335.1.A1_at	A	A1MS	POPTR_0002s19240	POPTR_0002s19240 (9)	scaffold_2:15165658-15166069(+) (9)	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os01g22870.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
PtpAffx.159337.1.A1_at	A	A1TS	POPTR_0015s11550	POPTR_0015s11550 (10)	scaffold_15:12116655-12117216(-) (10)	NA	Q93W88	Transcription factor bHLH137	AT5G50915.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g33580.2	"BEE 1, putative, expressed"	Medtr4g152040.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.159340.1.A1_at	A	A1TS	POPTR_0003s04740	POPTR_0003s04740 (11)	scaffold_3:5756215-5756746(-) (11)	NA	NA	NA	AT3G16350.1	Homeodomain-like superfamily protein 	LOC_Os01g09280.1	"myb-related transcription activator, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159345.1.A1_at	A	A1TS	POPTR_0006s23480	POPTR_0006s23480 (11)	scaffold_6:22193296-22193809(+) (11)	NA	Q84QC2	Ethylene-responsive transcription factor ERF017	AT1G19210.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g54050.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr3g138910.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.159361.1.A1_at	A	A1TS	POPTR_0001s43290	POPTR_0001s43290 (11)	scaffold_1:43336930-43337650(-) (11)	NA	B9SV63	UPF0497 membrane protein 15	AT5G44550.1	Uncharacterised protein family (UPF0497) 	LOC_Os12g41690.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g137870.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159394.1.A1_at	A	A1TS	POPTR_0006s20550	POPTR_0006s20550 (11)	scaffold_6:19578795-19579284(+) (11)	NA	NA	NA	AT5G06790.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os09g10730.1	expressed protein	Medtr7g111720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159420.1.A1_at	A	A1TS	POPTR_0006s03200	POPTR_0006s03200 (11)	scaffold_6:2015360-2015806(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G07050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr8g044450.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.159421.1.A1_at	A	A1MS	POPTR_0006s01000	POPTR_0006s01000 (10)	scaffold_6:560935-561278(+) (10)	NA	Q9M1H3	ABC transporter F family member 4	AT3G54540.1	general control non-repressible 4 	LOC_Os03g32630.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g089230.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.15943.1.S1_s_at	A	A1TS	POPTR_0001s04940	POPTR_0001s04940 (11)	scaffold_1:3773907-3775011(-) (11)	NA	Q9SFU6	Callose synthase 9	AT3G07160.1	glucan synthase-like 10 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.159432.1.S1_s_at	A	A1TS	POPTR_0008s12470	POPTR_0008s12470 (11)	scaffold_8:8064981-8066877(-) (11)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT3G18210.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159450.1.A1_at	A	A1TS	POPTR_0008s04490	POPTR_0008s04490 (10)	scaffold_8:2530799-2531992(-) (10)	NA	P47927	Floral homeotic protein APETALA 2	AT2G28550.3	related to AP2.7 	LOC_Os05g03040.1	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.159468.1.A1_at	A	A1TS	POPTR_0017s07370	POPTR_0017s07370 (10)	scaffold_17:5749858-5749893(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159473.1.A1_at	A	A1TS	POPTR_0015s04320	POPTR_0015s04320 (11)	scaffold_15:4407822-4408039(-) (11)	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT3G18050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g37156.1	expressed protein	Medtr4g155370.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159492.1.A1_at	A	A1TS	POPTR_0003s14330	POPTR_0003s14330 (11)	scaffold_3:14423629-14424392(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15950.1.S1_at	A	A1TS	POPTR_0014s10600	POPTR_0014s10600 (11)	scaffold_14:7892856-7893205(-) (11)	NA	Q9M263	Germin-like protein subfamily 2 member 4	AT3G62020.1	germin-like protein 10 	LOC_Os05g19670.1	"Cupin domain containing protein, expressed"	Medtr1g103240.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.15950.2.S1_s_at	A	A1TS	POPTR_0002s18570	POPTR_0002s18570 (11)	scaffold_2:14445452-14445865(-) (11)	NA	Q9M263	Germin-like protein subfamily 2 member 4	AT3G62020.1	germin-like protein 10 	LOC_Os05g19670.1	"Cupin domain containing protein, expressed"	Medtr1g103240.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.159530.1.A1_at	A	A1TS	POPTR_0017s04810	POPTR_0017s04810 (11)	scaffold_17:3705651-3705796(-) (11)	NA	Q9H0R5	Guanylate-binding protein 3	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.159532.1.A1_at	A	A1TS	POPTR_0004s08960	POPTR_0004s08960 (11)	scaffold_4:7521175-7523283(+) (11)	NA	O82782	"1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic"	AT2G36230.1	Aldolase-type TIM barrel family protein 	LOC_Os05g33260.3	"1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed"	Medtr2g018490.1	"Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	NA	NA
PtpAffx.159533.1.A1_at	A	A1TS	POPTR_0001s03780	POPTR_0001s03780 (11)	scaffold_1:3064396-3064723(-) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159539.1.S1_at	A	A1TS	POPTR_0012s02140	POPTR_0012s02140 (11)	scaffold_12:1778823-1778990(-) (11)	NA	O35685	Nuclear migration protein nudC	AT5G53400.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159539.1.S1_s_at	A	A1TS	POPTR_0012s02140	POPTR_0012s02140 (10)	scaffold_12:1778878-1779081(-) (10)	NA	O35685	Nuclear migration protein nudC	AT5G53400.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15954.1.A1_at	A	A1TS	POPTR_0012s11640	POPTR_0012s11640 (11)	scaffold_12:11982449-11983831(-) (11)	NA	B9NAN0	"Arginine biosynthesis bifunctional protein ArgJ, chloroplastic"	AT2G37500.1	arginine biosynthesis protein ArgJ family 	LOC_Os03g17120.1	"arginine biosynthesis bifunctional protein argJ 1, putative, expressed"	AC233662_37.1	Arginine biosynthesis protein ArgJ AC233662.1 191889-184516 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006526|arginine biosynthetic process	GO:0004358|glutamate N-acetyltransferase activity	NA
PtpAffx.159543.1.A1_at	A	A1TS	POPTR_0006s10200	POPTR_0006s10200 (11)	scaffold_6:7558411-7558708(-) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235756_21.1	2OG-Fe(II) oxygenase AC235756.1 149509-155143 H EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159543.2.A1_a_at	A	A2TS	POPTR_0006s10200	POPTR_0006s10210 (11)//POPTR_0006s10200 (11)	scaffold_6:7558935-7559018(-) (11)//scaffold_6:7591600-7591683(+) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235756_21.1	2OG-Fe(II) oxygenase AC235756.1 149509-155143 H EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159543.2.A1_at	A	A1TS	POPTR_0006s10210	POPTR_0006s10210 (11)	scaffold_6:7591927-7592228(+) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g03640.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235756_21.1	2OG-Fe(II) oxygenase AC235756.1 149509-155143 H EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159549.1.A1_at	A	A1TS	POPTR_0010s19000	POPTR_0010s19000 (10)	scaffold_10:17055420-17055461(+) (10)	NA	NA	NA	AT5G05365.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g61070.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g091130.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.15957.1.S1_at	A	A1TS	POPTR_0015s09550	POPTR_0015s09550 (11)	scaffold_15:10744415-10744897(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15957.2.S1_at	A	A1TS	POPTR_0015s09540	POPTR_0015s09540 (11)	scaffold_15:10739021-10739110(+) (11)	NA	O61967	Protein lap1	AT3G11330.1	plant intracellular ras group-related LRR 9 	LOC_Os04g40080.1	"leucine rich repeat containing protein, expressed"	Medtr3g114800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.159575.1.A1_at	A	A1TS	POPTR_0001s09800	POPTR_0001s09800 (11)	scaffold_1:7535368-7536020(-) (11)	NA	Q39024	Mitogen-activated protein kinase 4	AT4G01370.1	MAP kinase 4 	LOC_Os08g06060.1	"CGMC_MAPKCMGC_2_ERK.13 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g088400.1	Serine/threonine protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159602.1.A1_at	A	A1TS	POPTR_0021s00680	POPTR_0021s00680 (11)	scaffold_21:368746-368972(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os04g23700.1	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159630.1.A1_at	A	A1TS	POPTR_0010s23380	POPTR_0010s23380 (11)	scaffold_10:19983578-19984168(-) (11)	NA	Q93YU5	Probable exocyst complex component 4	AT3G10380.1	subunit of exocyst complex 8 	LOC_Os08g22864.1	"sec8 exocyst complex component specific domain containing protein, expressed"	Medtr5g017660.1	hypothetical protein 	GO:0006904|vesicle docking during exocytosis||GO:0015031|protein transport	NA	GO:0000145|exocyst
PtpAffx.159635.1.A1_at	A	A1TS	POPTR_0014s09180	POPTR_0014s09180 (11)	scaffold_14:6809207-6809378(+) (11)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008800.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159638.1.A1_at	A	A1TS	POPTR_0008s03240	POPTR_0008s03240 (11)	scaffold_8:1704119-1704670(-) (11)	NA	NA	NA	AT5G22930.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.1	expressed protein	Medtr4g076380.1	Protein of unknown function DUF1635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159650.1.A1_a_at	A	A1TS	POPTR_0016s08560	POPTR_0016s08560 (11)	scaffold_16:6360371-6360462(-) (11)	NA	O95628	CCR4-NOT transcription complex subunit 4	AT3G45630.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g01190.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g080070.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.159657.1.A1_at	A	A1TS	POPTR_0013s00400	POPTR_0013s00400 (11)	scaffold_13:163400-165687(+) (11)	NA	P18549	Isopenicillin N epimerase	AT5G26600.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g18640.2	"aminotransferase, putative, expressed"	Medtr7g134940.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15966.1.S1_at	A	A1TS	POPTR_0011s09840	POPTR_0011s09840 (11)	scaffold_11:12277525-12278619(-) (11)	NA	Q54WR5	Coiled-coil domain-containing protein 94 homolog	AT1G17130.1	Family of unknown function (DUF572)  	LOC_Os01g40610.1	"coiled-coil domain-containing protein, putative, expressed"	Medtr8g008480.1	Protein of unknown function DUF572 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159667.2.A1_a_at	A	A1TS	POPTR_0010s10550	POPTR_0010s10550 (11)	scaffold_10:11050605-11051190(-) (11)	NA	Q27GI3	Nucleobase-ascorbate transporter 6	AT5G62890.3	Xanthine/uracil permease family protein 	LOC_Os08g32500.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g073630.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.159678.1.A1_at	A	A1TS	POPTR_0013s06320	POPTR_0013s06320 (11)	scaffold_13:4798118-4798500(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT5G17800.1	myb domain protein 56 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr7g103750.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159685.1.A1_at	A	A1TS	POPTR_0014s16290	POPTR_0014s16290 (11)	scaffold_14:12392933-12393452(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g105020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159704.1.A1_at	A	A1TS	POPTR_0006s14650	POPTR_0006s14650 (11)	scaffold_6:12009995-12010140(+) (11)	NA	Q9LF64	RING-H2 finger protein ATL52	AT5G17600.1	RING/U-box superfamily protein 	LOC_Os02g15060.1	"zinc finger, C3HC4 type domain containing protein"	Medtr5g026890.1	"Putative RING-H2 finger protein ATL1H precursor, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159716.1.A1_at	A	A1TS	POPTR_0005s06690	POPTR_0005s06690 (11)	scaffold_5:4486572-4487408(-) (11)	NA	Q9LRE6	DNA polymerase delta catalytic subunit	AT5G63960.1	DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases 	LOC_Os11g08330.1	"POLD1 - Putative DNA polymerase delta catalytic subunit, expressed"	Medtr3g143070.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.159717.1.A1_s_at	A	A1TS	POPTR_0007s01760	POPTR_0007s01760 (11)	scaffold_7:1024831-1025353(+) (11)	NA	Q04088	Probable transcription factor PosF21	AT1G06070.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os09g34060.1	"transcription factor RF2a, putative, expressed"	Medtr2g118430.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.159733.1.A1_at	A	A1TS	POPTR_0001s27870	POPTR_0001s27870 (11)	scaffold_1:26733580-26734239(-) (11)	NA	Q54FQ8	Translation initiation factor eIF-2B subunit gamma	AT5G19485.1	transferases;nucleotidyltransferases 	LOC_Os06g23160.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr4g133990.1	Bacterial transferase hexapeptide repeat 	NA	GO:0016740|transferase activity	NA
PtpAffx.159753.1.A1_at	A	A1TS	POPTR_0008s14170	POPTR_0008s14170 (9)	scaffold_8:9353087-9353442(-) (9)	NA	NA	NA	AT1G75010.1	GTP binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159768.1.A1_at	A	A1TS	POPTR_0002s01580	POPTR_0002s01580 (11)	scaffold_2:853746-854054(+) (11)	NA	Q6CC39	tRNA pseudouridine synthase 1	AT1G20370.1	Pseudouridine synthase family protein 	LOC_Os02g44810.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr8g145890.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.159780.1.A1_at	A	A1TS	POPTR_0011s05430	POPTR_0011s05430 (11)	scaffold_11:5372397-5372798(+) (11)	NA	Q93Z00	Transcription factor TCP14	AT3G47620.1	"TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 "	LOC_Os02g51280.1	"TCP-domain protein, putative, expressed"	Medtr8g112560.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159782.1.A1_at	A	A1TS	POPTR_0018s14750	POPTR_0018s14750 (10)	scaffold_18:14845572-14845906(+) (10)	NA	NA	NA	AT5G58100.1	unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g26984.1	expressed protein	Medtr5g019420.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159785.1.A1_at	A	A1MS	POPTR_0006s19200	POPTR_0006s19200 (10)	scaffold_6:18179385-18179921(-) (10)	NA	NA	NA	AT1G67170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). 	LOC_Os04g40300.1	"transglutaminase, putative, expressed"	Medtr2g071550.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159803.1.A1_at	A	A1TS	POPTR_0002s14370	POPTR_0002s14370 (11)	scaffold_2:10637653-10638190(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159811.1.A1_s_at	A	A1TS	POPTR_0001s06740	POPTR_0001s06740 (11)	scaffold_1:5159060-5159226(-) (11)	NA	NA	NA	AT5G06970.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159812.1.A1_at	A	A1TA	POPTR_0007s06520	POPTR_0007s06520 (11)	scaffold_7:4897792-4898110(-) (11)	NA	NA	NA	AT5G09995.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g12129.1	expressed protein	Medtr3g144930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159822.1.A1_at	A	A1TS	POPTR_0010s05610	POPTR_0010s05610 (9)	scaffold_10:7052532-7052856(+) (9)	NA	NA	NA	AT1G70620.3	cyclin-related 	NA	NA	Medtr8g081860.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159828.1.A1_at	A	A1TS	POPTR_0008s14190	POPTR_0008s14190 (11)	scaffold_8:9374717-9375237(-) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G02070.1	indeterminate(ID)-domain 5 	LOC_Os09g38340.3	"ZOS9-17 - C2H2 zinc finger protein, expressed"	Medtr1g039670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.15983.1.A1_at	A	A2TA	POPTR_0002s07650	POPTR_0002s07650 (9)//POPTR_0002s07660 (9)	scaffold_2:5230082-5230291(+) (9)//scaffold_2:5237659-5237868(+) (9)	POPTR_0002s07670 (6)	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15983.1.S1_s_at	A	A2TS	POPTR_0002s07650	POPTR_0002s07650 (11)//POPTR_0002s07660 (11)	scaffold_2:5230172-5230236(-) (11)//scaffold_2:5237749-5237813(-) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159831.1.A1_at	A	A1TS	POPTR_0009s08430	POPTR_0009s08430 (10)	scaffold_9:7726748-7727190(+) (10)	NA	Q9M0Z3	"K(+) efflux antiporter 3, chloroplastic"	AT4G04850.2	K+ efflux antiporter 3 	LOC_Os12g42300.1	"potasium efflux antiporter protein, putative, expressed"	Medtr4g121870.1	TrkA-N; Sodium/hydrogen exchanger 	GO:0006813|potassium ion transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.159832.1.A1_a_at	A	A1TS	POPTR_0018s03720	POPTR_0018s03720 (11)	scaffold_18:3165705-3168811(+) (11)	NA	Q5RC30	Signal peptidase complex catalytic subunit SEC11C	AT1G52600.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os06g16260.1	"OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed"	Medtr2g126230.1	"Peptidase S24, S26A and S26B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159837.1.A1_at	A	A1TS	POPTR_0019s00460	POPTR_0019s00460 (9)	scaffold_19:255313-255662(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159839.1.A1_at	A	A1MS	POPTR_0002s24820	POPTR_0002s24820 (11)	scaffold_2:22072030-22072199(+) (11)	NA	Q9FJK7	Cyclin-C1-2	AT5G48630.1	Cyclin family protein 	LOC_Os09g32680.1	"cyclin, putative, expressed"	Medtr7g062090.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159847.1.A1_a_at	A	A1TS	POPTR_0002s10830	POPTR_0002s10830 (11)	scaffold_2:7855067-7855420(-) (11)	NA	NA	NA	AT1G27590.1	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.1); Has 109 Blast hits to 109 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g49940.2	"ESP4, putative, expressed"	Medtr3g127790.1	"T17H3.9, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159854.1.A1_s_at	A	A1TS	POPTR_0019s08410	POPTR_0019s08410 (9)	scaffold_19:9933778-9934293(-) (9)	NA	O36015	Putative ribosomal RNA methyltransferase C4F10.03c	AT5G01230.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g49140.1	"ribosomal RNA large subunit methyltransferase J, putative, expressed"	Medtr2g015180.1	Ribosomal RNA methyltransferase RrmJ/FtsJ 	GO:0032259|methylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0008168|methyltransferase activity	NA
PtpAffx.159863.1.A1_at	A	A1TS	POPTR_0022s00700	POPTR_0022s00700 (10)	scaffold_22:332903-333316(+) (10)	NA	NA	NA	AT3G02430.1	Protein of unknown function (DUF679) 	LOC_Os08g01530.1	expressed protein	Medtr2g018110.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159874.1.A1_s_at	A	A1TS	POPTR_0014s16280	POPTR_0014s16280 (11)	scaffold_14:12370810-12371676(-) (11)	NA	P36183	Endoplasmin homolog	AT3G07770.1	HEAT SHOCK PROTEIN 89.1 	LOC_Os12g32986.1	"heat shock protein, putative, expressed"	Medtr5g105030.2	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.159891.1.A1_at	A	A1TS	POPTR_0004s00670	POPTR_0004s00670 (10)	scaffold_4:266962-270733(+) (10)	NA	Q9P281	BAH and coiled-coil domain-containing protein 1	AT4G22140.2	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os09g21770.1	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.159900.1.A1_a_at	A	A1TS	POPTR_0005s04910	POPTR_0005s04910 (11)	scaffold_5:3284441-3284520(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159900.1.A1_at	A	A1TS	POPTR_0005s04910	POPTR_0005s04910 (11)	scaffold_5:3284064-3284200(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159900.2.A1_at	A	A1MS	POPTR_0005s04910	POPTR_0005s04910 (11)	scaffold_5:3284535-3284791(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159905.1.A1_at	A	A1TS	POPTR_0001s45600	POPTR_0001s45600 (10)	scaffold_1:46112901-46113576(-) (11)	NA	Q9ZWQ9	Flavonol synthase/flavanone 3-hydroxylase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159910.1.A1_at	A	A1TS	POPTR_0001s03350	POPTR_0001s03350 (11)	scaffold_1:2728726-2728933(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159911.2.A1_at	A	A1TS	POPTR_0001s28870	POPTR_0001s28870 (11)	scaffold_1:27639873-27640844(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159912.1.A1_at	A	A1MS	POPTR_0004s01760	POPTR_0004s01760 (10)	scaffold_4:1064199-1064680(-) (10)	NA	Q8LE47	"Pentatricopeptide repeat-containing protein At1g61870, mitochondrial"	AT1G61870.1	pentatricopeptide repeat 336 	LOC_Os01g58080.3	"membrane-associated salt-inducible protein, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159916.1.A1_at	A	A1TS	POPTR_0001s30200	POPTR_0001s30200 (11)	scaffold_1:28736637-28736964(+) (11)	NA	NA	NA	AT3G19615.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159918.1.A1_at	A	A1TS	POPTR_0013s01820	POPTR_0013s01820 (10)	scaffold_13:1045567-1047099(-) (10)	NA	Q9Z0F6	Cell cycle checkpoint control protein RAD9A	AT3G05480.1	cell cycle checkpoint control protein family 	LOC_Os03g22450.1	"auxin response factor 75, putative, expressed"	Medtr7g138910.1	Rad9 	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	NA	NA
PtpAffx.159923.1.A1_at	A	A3MA	POPTR_0010s06010	POPTR_0010s06010 (11)//POPTR_0010s06030 (10)//POPTR_0010s06060 (9)	scaffold_10:7450132-7450691(-) (11)//scaffold_10:7458857-7459416(-) (10)//scaffold_10:7479755-7487670(-) (10)	POPTR_0010s06050 (8)//POPTR_0395s00200 (7)	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159932.1.A1_at	A	A1TA	POPTR_0010s09810	POPTR_0010s09810 (9)	scaffold_10:10437585-10438698(+) (9)	POPTR_0008s15200 (6)	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159933.1.A1_at	A	A1TS	POPTR_0011s14650	POPTR_0011s14650 (11)	scaffold_11:16991301-16991667(+) (11)	NA	Q6NVR9	ATPase family AAA domain-containing protein 3	AT5G16930.1	AAA-type ATPase family protein 	LOC_Os02g46990.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g107260.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.159935.1.A1_at	A	A1TS	POPTR_0006s28880	POPTR_0006s28880 (11)	scaffold_6:26414691-26415277(-) (11)//scaffold_6:26433843-26434429(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159940.1.A1_s_at	A	A1TS	POPTR_0004s07720	POPTR_0004s07720 (11)	scaffold_4:6351054-6351356(+) (11)	NA	NA	NA	AT5G52530.3	dentin sialophosphoprotein-related 	LOC_Os08g33320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159941.1.A1_at	A	A1MS	POPTR_0007s02660	POPTR_0007s02660 (11)	scaffold_7:1560078-1560600(-) (11)	NA	Q55B06	SPX and EXS domain-containing protein 1	AT5G35730.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os12g40340.1	"EXS family protein, putative, expressed"	Medtr7g084230.1	"EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.159944.1.A1_a_at	A	A1TS	POPTR_0007s06010	POPTR_0007s06010 (11)	scaffold_7:4160251-4160911(-) (11)	NA	Q9SNC6	U-box domain-containing protein 13	AT2G22125.1	binding 	LOC_Os06g11990.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159944.1.A1_at	A	A1MS	POPTR_0007s06010	POPTR_0007s06010 (11)	scaffold_7:4160459-4160940(-) (11)	NA	Q9SNC6	U-box domain-containing protein 13	AT2G22125.1	binding 	LOC_Os06g11990.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159946.1.A1_at	A	A1TS	POPTR_0006s25530	POPTR_0006s25530 (11)	scaffold_6:23927066-23928587(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G25820.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	Medtr4g159530.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.159951.1.A1_at	A	A1TS	POPTR_0010s23010	POPTR_0010s23010 (11)	scaffold_10:19705720-19706253(-) (11)	NA	O82632	GATA transcription factor 9	AT4G32890.1	GATA transcription factor 9 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr1g120760.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.159967.1.A1_s_at	A	A1TS	POPTR_0004s18420	POPTR_0004s18420 (11)	scaffold_4:18330750-18330858(+) (11)	NA	Q8BFY9	Transportin-1	AT2G16950.2	transportin 1 	LOC_Os04g59494.4	"transportin-2, putative, expressed"	Medtr2g006800.1	Armadillo-like helical 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.159991.1.A1_at	A	A1TS	POPTR_0001s15630	POPTR_0001s15630 (11)	scaffold_1:12472384-12472821(-) (11)	NA	NA	NA	AT2G01410.1	NHL domain-containing protein 	LOC_Os01g42140.1	expressed protein	Medtr7g020710.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1600.1.S1_at	A	A1TS	POPTR_0015s14680	POPTR_0015s14680 (10)	scaffold_15:14189874-14190212(+) (10)	NA	P17407	21 kDa protein	AT5G62360.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.160011.1.A1_at	A	A1TS	POPTR_0006s19870	POPTR_0006s19870 (9)	scaffold_6:18878924-18878999(-) (11)	NA	Q9AXJ4	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
PtpAffx.160019.1.A1_at	A	A1TS	POPTR_0013s03180	POPTR_0013s03180 (11)	scaffold_13:1938359-1938560(-) (11)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT3G05020.1	acyl carrier protein 1 	LOC_Os12g34890.1	"acyl carrier protein, putative, expressed"	Medtr2g025430.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
PtpAffx.160019.1.A1_s_at	A	A1TS	POPTR_0013s03180	POPTR_0013s03180 (10)	scaffold_13:1938475-1940016(-) (10)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT3G05020.1	acyl carrier protein 1 	LOC_Os12g34890.1	"acyl carrier protein, putative, expressed"	Medtr2g025430.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
PtpAffx.160055.1.A1_a_at	A	A1TS	POPTR_0014s02780	POPTR_0014s02780 (11)	scaffold_14:2312097-2312756(-) (11)	NA	NA	NA	AT1G45207.2	Remorin family protein 	LOC_Os02g52810.1	"remorin C-terminal domain containing protein, putative, expressed"	Medtr1g024260.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160055.3.A1_a_at	A	A1TS	POPTR_0002s12690	POPTR_0002s12690 (11)	scaffold_2:9458803-9459010(-) (11)	NA	NA	NA	AT1G45207.2	Remorin family protein 	LOC_Os02g52810.1	"remorin C-terminal domain containing protein, putative, expressed"	Medtr1g024260.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160058.2.A1_at	A	A1TS	POPTR_0001s18470	POPTR_0001s18470 (11)	scaffold_1:15523613-15523764(-) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.16006.1.A1_at	A	A1TS	POPTR_0006s07850	POPTR_0006s07850 (11)	scaffold_6:5746102-5746864(+) (11)	NA	O14053	Uncharacterized WD repeat-containing protein C1672.07	AT4G04940.1	transducin family protein / WD-40 repeat family protein 	LOC_Os06g43690.1	"WD repeat-containing protein, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.160061.1.A1_at	A	A1TS	POPTR_0002s25050	POPTR_0002s25050 (9)	scaffold_2:22249006-22249272(-) (9)	NA	P49211	60S ribosomal protein L32-1	AT4G18100.1	Ribosomal protein L32e 	LOC_Os09g32532.2	"60S ribosomal protein L32, putative, expressed"	Medtr4g134080.1	Ribosomal protein L32e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.160068.1.A1_s_at	A	A1TS	POPTR_0013s01520	POPTR_0013s01520 (11)	scaffold_13:860674-861916(-) (11)	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os03g22180.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.160068.2.S1_at	A	A1MS	POPTR_0002s00440	POPTR_0002s00440 (9)	scaffold_2:162060-162684(-) (10)	NA	Q8RY95	Squamosa promoter-binding-like protein 14	AT1G20980.1	squamosa promoter binding protein-like 14 	LOC_Os08g40260.1	"OsSPL15 - SBP-box gene family member, expressed"	Medtr1g039740.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.160085.1.A1_at	A	A1TS	POPTR_0016s04010	POPTR_0016s04010 (11)	scaffold_16:2249353-2249510(-) (11)	NA	P93002	Regulatory protein NPR1	AT2G41370.1	Ankyrin repeat family protein / BTB/POZ domain-containing protein 	LOC_Os01g72020.1	"BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr7g107020.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.160090.1.A1_at	A	A1MS	POPTR_0009s16370	POPTR_0009s16370 (11)	scaffold_9:12463781-12464201(-) (11)	NA	NA	NA	AT5G22210.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160091.2.A1_a_at	A	A1TS	POPTR_0006s29250	POPTR_0006s29250 (11)	scaffold_6:26682082-26683101(-) (11)	NA	Q99090	Light-inducible protein CPRF2	AT5G24800.1	basic leucine zipper 9 	LOC_Os02g07840.2	"bZIP transcription factor domain containing protein, expressed"	Medtr1g010030.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.1601.11.A1_at	A	A1TA	POPTR_0608s00210	POPTR_0608s00210 (11)	scaffold_12:4351713-4352162(-) (11)//scaffold_3:4966353-4966808(+) (11)//scaffold_608:7488-7936(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1601.13.S1_a_at	A	A1TS	POPTR_0010s19920	POPTR_0010s19920 (11)	scaffold_10:17683699-17684991(+) (11)	NA	Q6GV12	3-ketodihydrosphingosine reductase	AT3G06060.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g47350.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g151090.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.1601.17.S1_at	A	A1TS	POPTR_0001s34560	POPTR_0001s34560 (11)	scaffold_1:32745074-32745309(-) (11)	NA	Q9D081	UDP-N-acetylglucosamine transferase subunit ALG14 homolog	AT4G18230.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). 	LOC_Os03g30934.5	"UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed"	Medtr2g126390.1	Oligosaccharide biosynthesis protein Alg14 like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1601.18.A1_at	A	A1TS	POPTR_0009s15460	POPTR_0009s15460 (11)	scaffold_9:11953799-11954112(+) (11)	NA	Q8C0D5	Elongation factor Tu GTP-binding domain-containing protein 1	AT3G22980.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os03g44780.1	"elongation factor Tu family protein, putative, expressed"	Medtr8g139230.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.1601.19.S1_at	A	A1TS	POPTR_0004s24270	POPTR_0004s24270 (11)	scaffold_4:22965412-22966647(+) (11)	NA	NA	NA	AT4G19390.1	Uncharacterised protein family (UPF0114) 	LOC_Os06g49640.1	"uncharacterized UPF0114 domain containing protein, expressed"	Medtr5g025800.1	Uncharacterized protein UPF0114 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1601.21.S1_s_at	A	A1TS	POPTR_0002s06080	POPTR_0002s06080 (11)	scaffold_2:4075106-4075419(+) (11)	NA	Q9SJG9	Mitogen-activated protein kinase 20	AT2G42880.1	MAP kinase 20 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr3g119710.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1601.22.S1_at	A	A1MS	POPTR_0008s05870	POPTR_0008s05870 (11)	scaffold_8:3449410-3449849(-) (11)	NA	Q7X999	"Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic"	AT2G39730.2	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.1601.4.A1_s_at	A	A1TS	POPTR_0010s20810	POPTR_0010s20810 (11)	scaffold_10:18261121-18261155(+) (11)	NA	Q7X9A0	"Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic"	AT2G39730.1	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.1601.6.A1_a_at	A	A1MS	POPTR_0010s20810	POPTR_0010s20810 (11)	scaffold_10:18260978-18261013(+) (11)	NA	Q7X9A0	"Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic"	AT2G39730.1	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.1601.7.S1_at	A	A1TS	POPTR_0001s13800	POPTR_0001s13800 (11)	scaffold_1:10892928-10893562(+) (11)	NA	P13869	"Chlorophyll a-b binding protein, chloroplastic"	AT3G61470.1	photosystem I light harvesting complex gene 2 	LOC_Os07g38960.1	"chlorophyll A-B binding protein, putative, expressed"	AC233662_10.1	Chlorophyll A-B binding protein AC233662.1 39478-42517 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.1601.8.S1_s_at	A	A1TS	POPTR_0012s04700	POPTR_0012s04700 (11)	scaffold_12:4050645-4050722(-) (11)	NA	O24076	Guanine nucleotide-binding protein subunit beta-like protein	AT1G18080.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g49290.1	"WD repeat-containing protein, putative, expressed"	Medtr4g155480.1	"Guanine nucleotide-binding protein subunit beta-like protein, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160100.1.A1_at	A	A1TS	POPTR_0008s13600	POPTR_0008s13600 (11)	scaffold_8:8959372-8959696(-) (11)	NA	P93711	Caffeoyl-CoA O-methyltransferase	AT1G67980.1	caffeoyl-CoA 3-O-methyltransferase 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.160106.1.A1_s_at	A	A1TS	POPTR_0014s11180	POPTR_0014s11180 (9)	scaffold_14:8313897-8313929(+) (9)	NA	P51823	ADP-ribosylation factor 2	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os05g41060.1	"ADP-ribosylation factor, putative, expressed"	Medtr1g106180.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.160113.1.A1_s_at	A	A1TS	POPTR_0001s04380	POPTR_0001s04380 (11)	scaffold_1:3480339-3481231(+) (11)	NA	Q8Z1R0	Acetyl-coenzyme A synthetase	AT1G55320.1	acyl-activating enzyme 18 	LOC_Os03g59080.1	"AMP-binding enzyme, putative, expressed"	Medtr4g134030.1	"AMP-dependent synthetase and ligase; Legume lectin, alpha "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.160116.1.A1_at	A	A1TS	POPTR_0012s05810	POPTR_0012s05810 (11)	scaffold_12:5627496-5627640(+) (11)	NA	Q9LS42	Protein CASP	AT3G18480.1	CCAAT-displacement protein alternatively spliced product 	LOC_Os03g50300.1	"CASP, putative, expressed"	Medtr4g158400.1	"CASP, C-terminal "	GO:0006891|intra-Golgi vesicle-mediated transport	NA	GO:0030173|integral to Golgi membrane
PtpAffx.160125.1.A1_at	A	A1TS	POPTR_0002s17830	POPTR_0002s17830 (11)	scaffold_2:13647572-13648172(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160131.1.A1_at	A	A1MS	POPTR_0017s05650	POPTR_0017s05650 (11)	scaffold_17:4426158-4426343(-) (11)	NA	NA	NA	AT3G59520.1	RHOMBOID-like protein 13 	LOC_Os01g67040.2	"OsRhmbd5 - Putative Rhomboid homologue, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.160131.2.A1_a_at	A	A1TS	POPTR_0017s05650	POPTR_0017s05650 (11)	scaffold_17:4426348-4426492(-) (11)	NA	NA	NA	AT3G59520.1	RHOMBOID-like protein 13 	LOC_Os01g67040.2	"OsRhmbd5 - Putative Rhomboid homologue, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.160133.2.A1_a_at	A	A1TS	POPTR_0006s00970	POPTR_0006s00970 (11)	scaffold_6:545561-546055(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160139.1.A1_at	A	A1TS	POPTR_0005s07370	POPTR_0005s07370 (11)	scaffold_5:5038124-5038714(+) (11)	NA	A2YNT8	Serine/threonine-protein kinase SAPK2	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os07g42940.1	"CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g073720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160147.1.A1_at	A	A1TS	POPTR_0011s12150	POPTR_0011s12150 (11)	scaffold_11:14925977-14926384(+) (11)	NA	Q84JR3	"Pentatricopeptide repeat-containing protein At4g21705, mitochondrial"	AT4G21705.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160149.1.A1_at	A	A1TS	POPTR_0002s04710	POPTR_0002s04710 (11)	scaffold_2:2950594-2950686(-) (11)	NA	NA	NA	AT3G22970.1	Protein of unknown function (DUF506)  	LOC_Os03g58230.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr1g083310.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160160.1.A1_at	A	A1TS	POPTR_0019s14180	POPTR_0019s14180 (11)	scaffold_19:14932464-14933703(+) (11)	NA	Q4R6X9	Leucine-rich repeat-containing protein 48	AT4G03260.2	Outer arm dynein light chain 1 protein 	LOC_Os07g01550.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.160169.1.A1_a_at	A	A1TS	POPTR_0013s03960	POPTR_0013s03960 (11)	scaffold_13:2589030-2589169(-) (11)	NA	P16157	Ankyrin-1	AT3G04710.3	ankyrin repeat family protein 	LOC_Os05g01310.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g046490.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160176.1.S1_at	A	A1TS	POPTR_0002s10670	POPTR_0002s10670 (11)	scaffold_2:7748478-7749661(-) (11)	NA	NA	NA	AT1G09710.2	Homeodomain-like superfamily protein 	LOC_Os02g34630.1	"MYB family transcription factor, putative, expressed"	Medtr3g149540.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160182.1.A1_a_at	A	A2TS	POPTR_0006s01830	POPTR_0006s01830 (11)//POPTR_0016s00940 (11)	scaffold_16:361701-361773(-) (11)//scaffold_6:1110821-1110893(+) (11)	NA	Q9ATB4	Transcriptional adapter ADA2b	AT4G16420.2	homolog of yeast ADA2 2B 	LOC_Os03g53960.2	"transcriptional adaptor, putative, expressed"	Medtr2g030360.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; SWIRM; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160187.1.A1_at	A	A1MS	POPTR_0009s04900	POPTR_0009s04900 (11)	scaffold_9:5148760-5149104(+) (11)	NA	A8AI59	Flavoprotein wrbA	AT5G58800.2	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g078480.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.160192.1.A1_at	A	A1TA	POPTR_0001s08030	POPTR_0001s08030 (10)	scaffold_1:6082548-6083024(+) (10)	NA	P34205	Deoxyribodipyrimidine photo-lyase	AT1G12370.2	photolyase 1 	LOC_Os10g08580.1	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g011940.1	"DNA photolyase, FAD-binding "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.160195.1.A1_at	A	A1TS	POPTR_0012s04790	POPTR_0012s04790 (10)	scaffold_12:4177823-4178084(+) (10)	NA	P29620	Cyclin-dependent kinase D-1	AT1G18040.1	cyclin-dependent kinase D1;3 	LOC_Os05g32600.1	"cyclin-dependent kinase D-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160195.1.A1_s_at	A	A1TS	POPTR_0012s04790	POPTR_0012s04790 (11)	scaffold_12:4177756-4177982(+) (11)	NA	P29620	Cyclin-dependent kinase D-1	AT1G18040.1	cyclin-dependent kinase D1;3 	LOC_Os05g32600.1	"cyclin-dependent kinase D-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160204.1.A1_at	A	A1TS	POPTR_0018s02570	POPTR_0018s02570 (9)	scaffold_18:2333274-2333968(-) (9)	NA	Q8RXN4	"3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial"	AT4G31810.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os10g40540.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr1g016790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.160214.1.A1_at	A	A1TS	POPTR_0002s13450	POPTR_0002s13450 (11)	scaffold_2:9978456-9978764(-) (11)	NA	Q3UMR5	Coiled-coil domain-containing protein 109A	AT2G23790.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160220.1.A1_at	A	A1TS	POPTR_0002s21410	POPTR_0002s21410 (11)	scaffold_2:17878698-17879162(+) (11)	NA	Q5VR89	Aquaporin SIP1-1	AT5G18290.2	Aquaporin-like superfamily protein 	LOC_Os01g08660.1	"aquaporin protein, putative, expressed"	Medtr4g064600.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160223.1.A1_a_at	A	A2TS	POPTR_0004s10610	POPTR_0017s14250 (11)//POPTR_0004s10610 (11)	scaffold_17:14379070-14379470(+) (11)//scaffold_4:9142726-9143128(+) (11)	NA	Q6NKX1	"Proline dehydrogenase 2, mitochondrial"	AT5G38710.1	Methylenetetrahydrofolate reductase family protein 	LOC_Os10g40360.1	"proline oxidase, mitochondrial precursor, putative, expressed"	Medtr7g020690.1	Proline dehydrogenase 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006562|proline catabolic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0004657|proline dehydrogenase activity	NA
PtpAffx.160223.1.A1_at	A	A1TS	POPTR_0004s10610	POPTR_0004s10610 (11)	scaffold_4:9142667-9143366(+) (11)	NA	Q6NKX1	"Proline dehydrogenase 2, mitochondrial"	AT5G38710.1	Methylenetetrahydrofolate reductase family protein 	LOC_Os10g40360.1	"proline oxidase, mitochondrial precursor, putative, expressed"	Medtr7g020690.1	Proline dehydrogenase 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006562|proline catabolic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0004657|proline dehydrogenase activity	NA
PtpAffx.160223.2.A1_at	A	A1TS	POPTR_0017s14250	POPTR_0017s14250 (11)	scaffold_17:14379044-14379771(+) (11)	NA	Q6NKX1	"Proline dehydrogenase 2, mitochondrial"	AT5G38710.1	Methylenetetrahydrofolate reductase family protein 	LOC_Os10g40360.1	"proline oxidase, mitochondrial precursor, putative, expressed"	Medtr7g020690.1	Proline dehydrogenase 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006562|proline catabolic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0004657|proline dehydrogenase activity	NA
PtpAffx.160226.1.A1_at	A	A1TS	POPTR_0009s05090	POPTR_0009s05090 (11)	scaffold_9:5253564-5253729(+) (11)	NA	NA	NA	AT5G58720.1	smr (Small MutS Related) domain-containing protein 	LOC_Os01g12530.1	"smr domain containing protein, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160230.1.A1_at	A	A1TA	POPTR_0004s11080	POPTR_0004s11080 (11)	scaffold_4:9687123-9687674(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160231.1.A1_at	A	A1TS	POPTR_0017s12450	POPTR_0017s12450 (11)	scaffold_17:12619478-12620021(-) (11)	NA	Q39131	Lamin-like protein	AT2G27035.1	early nodulin-like protein 20 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr3g162720.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.160238.1.A1_at	A	A1TS	POPTR_0007s03300	POPTR_0007s03300 (9)	scaffold_7:1912587-1914761(-) (11)	NA	Q9FUY6	MADS-box protein JOINTLESS	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os02g52340.1	"OsMADS22 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.160239.1.A1_at	A	A1TS	POPTR_0001s32620	POPTR_0001s32620 (11)	scaffold_1:30890881-30891307(-) (11)	NA	O75691	Small subunit processome component 20 homolog	AT4G30990.1	ARM repeat superfamily protein 	LOC_Os01g40250.1	"down-regulated in metastasis family protein, expressed"	Medtr3g105260.1	Down-regulated in metastasis 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160244.1.A1_at	A	A1TS	POPTR_0007s03400	POPTR_0007s03400 (9)	scaffold_7:1957026-1957400(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr5g073480.1	"Uncharacterized 24.1 kDa protein in LEF4-P33 intergenic region, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160252.1.S1_at	A	A1TS	POPTR_0006s13550	POPTR_0006s13550 (11)	scaffold_6:10779233-10779719(+) (11)	NA	Q9ZUU0	WRKY transcription factor 44	AT2G37260.1	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g120710.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.160252.2.A1_at	A	A1TS	POPTR_0016s08440	POPTR_0016s08440 (11)	scaffold_16:6252358-6252785(-) (11)	NA	Q9C5T3	Probable WRKY transcription factor 26	AT5G07100.1	WRKY DNA-binding protein 26 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g120710.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.160256.2.A1_s_at	A	A1TS	POPTR_0016s12350	POPTR_0016s12350 (11)	scaffold_16:11675192-11675616(-) (11)	NA	Q9M028	LIMR family protein At5g01460	AT5G01460.1	LMBR1-like membrane protein 	LOC_Os06g03760.2	"LMBR1 integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160259.1.A1_at	A	A1TS	POPTR_0006s10610	POPTR_0006s10610 (11)	scaffold_6:7945979-7946863(-) (11)	NA	Q8RWU5	F-box/LRR-repeat protein 3	AT5G01720.1	RNI-like superfamily protein 	LOC_Os12g01760.1	"F-box/LRR domain containing protein, putative, expressed"	Medtr7g138390.1	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.160266.1.A1_at	A	A1TS	POPTR_0005s16280	POPTR_0005s16280 (11)	scaffold_5:12999421-12999556(+) (11)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006333|chromatin assembly or disassembly||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0003682|chromatin binding||GO:0008270|zinc ion binding"	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.160266.1.A1_s_at	A	A2TS	POPTR_0002s09010	POPTR_0002s09010 (11)//POPTR_0005s16280 (11)	scaffold_2:6381053-6382959(+) (11)//scaffold_5:12997609-12999278(+) (11)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0008270|zinc ion binding"	GO:0005634|nucleus
PtpAffx.160270.1.A1_at	A	A1MS	POPTR_0006s12310	POPTR_0006s12310 (11)	scaffold_6:9478866-9479238(-) (11)	NA	Q15428	Splicing factor 3A subunit 2	AT2G32600.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g15700.1	"splicing factor 3A subunit 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160277.1.A1_at	A	A1TS	POPTR_0004s03650	POPTR_0004s03650 (11)	scaffold_4:2528460-2528736(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160282.1.A1_at	A	A1TS	POPTR_0005s14520	POPTR_0005s14520 (11)	scaffold_5:11564863-11565503(+) (11)	NA	NA	NA	AT5G39790.1	5'-AMP-activated protein kinase-related 	LOC_Os02g04330.2	"5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed"	Medtr5g039250.1	"Glycoside hydrolase, family 13, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16030.1.S1_a_at	A	A1TS	POPTR_0010s15290	POPTR_0010s15290 (11)	scaffold_10:14619103-14620799(-) (11)	NA	NA	NA	AT1G79790.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os11g19460.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr7g089310.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.16030.3.S1_a_at	A	A1TS	POPTR_0010s15290	POPTR_0010s15290 (11)	scaffold_10:14617268-14617385(-) (11)	NA	NA	NA	AT1G79790.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os11g19460.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr7g089310.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.160327.1.A1_at	A	A1TS	POPTR_0018s12840	POPTR_0018s12840 (11)	scaffold_18:13360337-13360978(+) (11)	NA	Q8LGE3	Actin-related protein 6	AT3G33520.1	actin-related protein 6 	LOC_Os01g16414.4	"actin, putative, expressed"	Medtr7g027010.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.160334.1.A1_at	A	A1TS	POPTR_0013s04790	POPTR_0013s04790 (11)	scaffold_13:3305668-3306225(+) (11)	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g022900.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.160346.1.A1_at	A	A1TS	POPTR_0002s16880	POPTR_0002s16880 (11)	scaffold_2:12629064-12630152(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT3G61610.1	Galactose mutarotase-like superfamily protein 	LOC_Os01g46950.1	"aldose 1-epimerase, putative, expressed"	Medtr4g121890.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.160357.1.A1_at	A	A1TS	POPTR_0004s22540	POPTR_0004s22540 (11)	scaffold_4:21408183-21408705(+) (11)	NA	NA	NA	AT2G28120.1	Major facilitator superfamily protein 	LOC_Os03g58580.1	"nodulin, putative, expressed"	AC233660_5.1	Nodulin-like; Major facilitator superfamily MFS_1 AC233660.2 23536-25326 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160360.1.A1_at	A	A1TS	POPTR_0008s20530	POPTR_0008s20530 (11)	scaffold_8:14275459-14275944(-) (11)	NA	Q8W4J2	Mitogen-activated protein kinase 16	AT5G19010.1	mitogen-activated protein kinase 16 	LOC_Os05g05160.1	"CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g026470.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160367.1.A1_at	A	A1TS	POPTR_0008s04830	POPTR_0008s04830 (11)	scaffold_8:2799768-2800164(-) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G12360.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160374.1.A1_at	A	A1TS	POPTR_0006s27440	POPTR_0006s27440 (11)	scaffold_6:25341849-25342099(-) (11)	NA	Q6DJ03	Protein MEMO1	AT2G25280.1	"CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). "	LOC_Os08g20270.2	"MEMO1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160389.1.A1_at	A	A1TS	POPTR_0001s41440	POPTR_0001s41440 (11)	scaffold_1:41063300-41063510(-) (11)	NA	Q7XSK0	Beta-glucosidase 18	AT4G21760.1	beta-glucosidase 47 	LOC_Os04g43410.1	"Os4bglu18 - monolignol beta-glucoside homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.160389.1.A1_s_at	A	A1TS	POPTR_0001s41440	POPTR_0001s41440 (11)	scaffold_1:41063520-41063818(-) (11)	NA	Q7XSK0	Beta-glucosidase 18	AT4G21760.1	beta-glucosidase 47 	LOC_Os04g43410.1	"Os4bglu18 - monolignol beta-glucoside homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.160390.3.A1_s_at	A	A1TS	POPTR_0012s00660	POPTR_0012s00660 (11)	scaffold_12:365840-366785(+) (11)	NA	Q0JH50	Gibberellin 20 oxidase 2	AT5G24530.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g03034.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.160399.1.A1_at	A	A1TS	POPTR_0013s14910	POPTR_0013s14910 (9)	scaffold_13:14993014-14993271(+) (11)	NA	O54922	Exocyst complex component 7	AT5G58430.1	exocyst subunit exo70 family protein B1 	LOC_Os05g39610.1	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr5g081630.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.1604.1.A1_s_at	A	A1TS	POPTR_0010s20000	POPTR_0010s20000 (10)	scaffold_10:17752036-17752434(+) (10)	NA	Q76P23	Mitochondrial substrate carrier family protein Q	AT2G39970.1	Mitochondrial substrate carrier family protein 	LOC_Os03g15860.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g089250.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160413.1.A1_at	A	A1TS	POPTR_0008s13150	POPTR_0008s13150 (11)	scaffold_8:8594752-8595193(+) (11)	NA	NA	NA	AT1G70750.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16044.1.S1_at	A	A1MS	POPTR_0003s06550	POPTR_0003s06550 (11)	scaffold_3:8039420-8039928(+) (11)	NA	NA	NA	AT1G54120.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g025160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160440.1.A1_at	A	A1TS	POPTR_0014s11300	POPTR_0014s11300 (11)	scaffold_14:8404586-8404790(-) (11)	NA	Q93W77	"NifU-like protein 1, chloroplastic"	AT4G01940.1	NFU domain protein 1 	LOC_Os03g20010.1	"nifU, putative, expressed"	Medtr7g133310.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.160441.1.A1_at	A	A1TS	POPTR_0016s12480	POPTR_0016s12480 (11)	scaffold_16:11938509-11938959(-) (11)	NA	NA	NA	AT5G01370.1	ALC-interacting protein 1 	NA	NA	Medtr4g013080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160443.1.A1_s_at	A	A1TS	POPTR_0011s04300	POPTR_0011s04300 (11)	scaffold_11:4312034-4312509(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160447.1.A1_at	A	A1TS	POPTR_0005s11020	POPTR_0005s11020 (11)	scaffold_5:7949988-7950455(-) (11)	NA	NA	NA	AT1G21740.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37040.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr4g140290.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160464.1.A1_at	A	A1MS	POPTR_0006s23620	POPTR_0006s23620 (9)	scaffold_6:22336934-22337231(+) (9)	NA	NA	NA	AT2G26310.1	Chalcone-flavanone isomerase family protein 	LOC_Os02g53810.1	expressed protein	Medtr1g019800.1	hypothetical protein 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
PtpAffx.160470.1.A1_s_at	A	A1TS	POPTR_0001s00390	POPTR_0001s00390 (11)	scaffold_1:303381-303482(+) (11)	NA	Q940Y1	Oxysterol-binding protein-related protein 2A	AT4G22540.1	OSBP(oxysterol binding protein)-related protein 2A 	LOC_Os08g05870.1	"oxysterol-binding protein-related protein 6, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.160479.1.A1_at	A	A1TS	POPTR_0018s07760	POPTR_0018s07760 (11)	scaffold_18:8499955-8500919(-) (11)	NA	NA	NA	AT5G11960.1	Protein of unknown function (DUF803) 	LOC_Os01g51190.1	expressed protein	Medtr1g019910.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160484.1.A1_s_at	A	A1TS	POPTR_0006s26270	POPTR_0006s26270 (11)	scaffold_6:24524081-24525493(-) (11)	NA	P82715	"PsbP domain-containing protein 5, chloroplastic"	AT5G11450.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os01g43070.1	"psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed"	Medtr3g136110.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160485.2.A1_a_at	A	A1TS	POPTR_0003s13770	POPTR_0003s13770 (11)	scaffold_3:14065854-14067074(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g42720.2	expressed protein	Medtr8g119540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160487.1.A1_at	A	A1TS	POPTR_0022s00820	POPTR_0022s00820 (10)	scaffold_22:416548-417930(+) (10)	NA	Q5R7Q3	Magnesium transporter NIPA2	AT1G71900.1	Protein of unknown function (DUF803) 	LOC_Os01g65986.1	"DUF803 domain containing, putative, expressed"	Medtr2g005850.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160490.1.A1_s_at	A	A1TS	POPTR_0017s02960	POPTR_0017s02960 (11)	scaffold_17:2126656-2126977(-) (11)	NA	NA	NA	AT5G16720.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160504.1.A1_s_at	A	A1TS	POPTR_0002s09330	POPTR_0002s09330 (11)	scaffold_2:6625108-6625207(-) (11)	NA	P78820	Acetyl-CoA carboxylase	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
PtpAffx.160510.1.A1_at	A	A1TS	POPTR_0002s23650	POPTR_0002s23650 (11)	scaffold_2:21187761-21187859(+) (11)	NA	Q9SRT2	Transcription factor bHLH62	AT3G07340.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr8g012630.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.160515.1.A1_at	A	A1TS	POPTR_0005s11150	POPTR_0005s11150 (11)	scaffold_5:8096275-8096545(-) (11)	NA	NA	NA	AT3G51325.1	RING/U-box superfamily protein 	LOC_Os04g16970.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g022720.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16052.1.S1_a_at	A	A1TS	POPTR_0011s00890	POPTR_0011s00890 (11)	scaffold_11:453197-453410(+) (11)	NA	Q56X52	"Alternative oxidase 4, chloroplastic/chromoplastic"	AT4G22260.1	Alternative oxidase family protein 	LOC_Os04g57320.1	"immutans protein, putative, expressed"	Medtr2g029210.1	"Alternative oxidase, identical "	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
PtpAffx.16052.2.S1_a_at	A	A2TS	POPTR_0004s00420	POPTR_0011s00890 (11)//POPTR_0004s00420 (11)	scaffold_11:452872-453263(+) (11)//scaffold_4:139148-139546(+) (11)	NA	Q56X52	"Alternative oxidase 4, chloroplastic/chromoplastic"	AT4G22260.1	Alternative oxidase family protein 	LOC_Os04g57320.1	"immutans protein, putative, expressed"	Medtr2g029210.1	"Alternative oxidase, identical "	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
PtpAffx.16052.3.S1_at	A	A1MS	POPTR_0011s00890	POPTR_0011s00890 (11)	scaffold_11:452665-452817(+) (11)	NA	Q56X52	"Alternative oxidase 4, chloroplastic/chromoplastic"	AT4G22260.1	Alternative oxidase family protein 	LOC_Os04g57320.1	"immutans protein, putative, expressed"	Medtr2g029210.1	"Alternative oxidase, identical "	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
PtpAffx.160522.1.S1_at	A	A1TS	POPTR_0009s05560	POPTR_0009s05560 (11)	scaffold_9:5632076-5632338(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g16880.1	expressed protein	Medtr4g104360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160532.1.A1_at	A	A1TS	POPTR_0002s16980	POPTR_0002s16980 (11)	scaffold_2:12750041-12750276(+) (11)	NA	NA	NA	AT1G01430.1	TRICHOME BIREFRINGENCE-LIKE 25 	LOC_Os05g12380.1	expressed protein	Medtr5g036370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160540.1.A1_at	A	A1TS	POPTR_0013s07980	POPTR_0013s07980 (9)	scaffold_13:6896839-6896985(-) (9)	NA	NA	NA	AT3G03130.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17160.1); Has 7130 Blast hits to 3690 proteins in 504 species: Archae - 22; Bacteria - 2666; Metazoa - 1654; Fungi - 721; Plants - 246; Viruses - 56; Other Eukaryotes - 1765 (source: NCBI BLink). 	LOC_Os02g47130.1	expressed protein	Medtr4g106890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160545.1.A1_at	A	A1TS	POPTR_0014s13490	POPTR_0014s13490 (11)	scaffold_14:9933818-9936363(+) (11)	NA	Q8L910	Probable glutathione peroxidase 4	AT2G48150.1	glutathione peroxidase 4 	LOC_Os03g24380.1	"glutathione peroxidase domain containing protein, expressed"	Medtr4g149540.2	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
PtpAffx.160545.1.A1_s_at	A	A1TS	POPTR_0014s13490	POPTR_0014s13490 (11)	scaffold_14:9933500-9936256(+) (11)	NA	Q8L910	Probable glutathione peroxidase 4	AT2G48150.1	glutathione peroxidase 4 	LOC_Os03g24380.1	"glutathione peroxidase domain containing protein, expressed"	Medtr4g149540.2	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
PtpAffx.160561.1.A1_at	A	A1TS	POPTR_0001s16420	POPTR_0001s16420 (11)	scaffold_1:13225122-13225441(+) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160569.1.A1_at	A	A1TS	POPTR_0013s03720	POPTR_0013s03720 (11)	scaffold_13:2365556-2365762(-) (11)	NA	Q9FGY9	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase	AT5G49570.1	peptide-N-glycanase 1 	LOC_Os07g31460.1	"peptide-Nasparagine amidase, putative, expressed"	Medtr7g140800.1	Transglutaminase-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.160576.1.A1_at	A	A1TS	POPTR_0008s06250	POPTR_0008s06250 (11)	scaffold_8:3699172-3699407(+) (11)	NA	NA	NA	AT2G39870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1); Has 73 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr5g088680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160579.1.A1_at	A	A1TS	POPTR_0002s05760	POPTR_0002s05760 (10)	scaffold_2:3779234-3779513(+) (10)	NA	Q6PGS5	Transmembrane protein 56-B	AT4G19645.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os05g43540.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.160584.1.A1_at	A	A1MA	POPTR_0002s25850	POPTR_0002s25850 (11)	scaffold_2:22882446-22882970(+) (11)	NA	NA	NA	AT2G20390.1	unknown protein; Has 50 Blast hits to 50 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g51840.3	expressed protein	Medtr7g116910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16060.1.S1_at	A	A1TS	POPTR_0006s12970	POPTR_0006s12970 (11)	scaffold_6:10225842-10226206(-) (11)	NA	NA	NA	AT5G03230.1	"Protein of unknown function, DUF584 "	LOC_Os04g43990.1	"DUF584 domain containing protein, putative, expressed"	Medtr7g121560.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16061.1.A1_at	A	A1TS	POPTR_0012s07340	POPTR_0012s07340 (11)	scaffold_12:8233125-8233663(+) (11)	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.16061.2.S1_at	A	A1TS	POPTR_0004s03670	POPTR_0004s03670 (9)	scaffold_4:2548272-2548549(+) (9)	NA	NA	NA	AT1G61255.1	BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g47270.1	"GCRP4 - Glycine and cysteine rich family protein precursor, expressed"	Medtr2g014240.1	"Glycine-rich protein DC9.1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160624.1.A1_s_at	A	A1TS	POPTR_0010s19660	POPTR_0010s19660 (11)	scaffold_10:17518646-17518888(-) (11)	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g093610.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.160627.1.A1_a_at	A	A1TS	POPTR_0010s10410	POPTR_0010s10410 (9)	scaffold_10:10922870-10923087(-) (9)	NA	NA	NA	AT2G02910.1	Protein of unknown function (DUF616) 	LOC_Os11g09170.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	AC146568_8.1	Protein of unknown function DUF616 AC146568.11 42302-43568 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16063.1.A1_at	A	A1TS	POPTR_0002s15990	POPTR_0002s15990 (11)	scaffold_2:11918481-11920100(-) (11)	NA	NA	NA	AT1G01730.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g44540.3	expressed protein	Medtr7g085210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160648.1.S1_s_at	A	A1TS	POPTR_0006s10360	POPTR_0006s10360 (11)	scaffold_6:7765542-7765816(+) (11)	NA	Q9LFG2	"Diaminopimelate epimerase, chloroplastic"	AT3G53580.1	diaminopimelate epimerase family protein 	LOC_Os12g37960.2	"diaminopimelate epimerase, chloroplast precursor, putative, expressed"	Medtr7g077770.1	Diaminopimelate epimerase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009089|lysine biosynthetic process via diaminopimelate	GO:0008837|diaminopimelate epimerase activity	GO:0005737|cytoplasm
PtpAffx.16065.1.S1_at	A	A1TS	POPTR_0010s06440	POPTR_0010s06440 (11)	scaffold_10:7802903-7803001(-) (11)	NA	Q9LU89	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os04g40860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.160654.1.S1_at	A	A1TS	POPTR_0004s17980	POPTR_0004s17980 (11)	scaffold_4:18009290-18010306(+) (11)	NA	NA	NA	AT2G17840.1	Senescence/dehydration-associated protein-related 	LOC_Os06g50330.1	"senescence-associated protein, putative, expressed"	Medtr5g022360.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160681.1.A1_at	A	A1TS	POPTR_0009s04590	POPTR_0009s04590 (11)	scaffold_9:4900378-4900767(-) (11)	NA	Q15477	Helicase SKI2W	AT3G46960.1	"RNA helicase, ATP-dependent, SK12/DOB1 protein "	LOC_Os02g06500.1	"DSHCT domain containing protein, expressed"	Medtr4g161100.1	"ATP-requiring DNA helicase RecQ; DSH, C-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.16070.1.S1_at	A	A1TS	POPTR_0002s15280	POPTR_0002s15280 (11)	scaffold_2:11420776-11421891(-) (11)	NA	O64644	Histone deacetylase complex subunit SAP18	AT2G45640.1	SIN3 associated polypeptide P18 	LOC_Os02g02960.4	"histone deacetylase complex subunit SAP18, putative, expressed"	AC233100_3.1	Sin3 associated polypeptide p18 AC233100.6 16242-12510 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160702.1.S1_s_at	A	A1TS	POPTR_0002s14140	POPTR_0002s14140 (11)	scaffold_2:10489452-10490576(+) (11)	NA	Q7T037	E3 ubiquitin-protein ligase RNF12-B	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160718.1.S1_at	A	A1TS	POPTR_0008s08600	POPTR_0008s08600 (10)	scaffold_8:5334581-5334790(-) (10)	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT2G02970.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os08g33850.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g044090.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.160721.1.S1_at	A	A1TS	POPTR_0005s07890	POPTR_0005s07890 (11)	scaffold_5:5412827-5413032(-) (11)	NA	O50401	Trehalose-phosphate phosphatase	AT5G65140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g31630.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr5g072070.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.160721.1.S1_s_at	A	A1TS	POPTR_0005s07890	POPTR_0005s07890 (11)	scaffold_5:5412163-5412721(-) (11)	POPTR_0007s05670 (6)	O50401	Trehalose-phosphate phosphatase	AT5G65140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g31630.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr5g072070.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.160733.1.S1_s_at	A	A1TS	POPTR_0014s16660	POPTR_0014s16660 (11)	scaffold_14:12757931-12758619(+) (11)	NA	P73627	Uncharacterized protein sll1770	AT3G07700.2	Protein kinase superfamily protein 	LOC_Os09g07660.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr3g106570.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160744.1.S1_at	A	A1TS	POPTR_0013s08550	POPTR_0013s08550 (10)	scaffold_13:7808263-7813270(+) (10)	NA	NA	NA	NA	NA	LOC_Os01g01050.2	"R3H domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.160770.1.S1_s_at	A	A1TS	POPTR_0007s11990	POPTR_0007s11990 (11)	scaffold_7:12334679-12335047(+) (11)	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160774.1.S1_s_at	A	A1TS	POPTR_0015s05000	POPTR_0015s05000 (11)	scaffold_15:5234775-5235124(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g080810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160787.1.S1_at	A	A1MS	POPTR_0004s04510	POPTR_0004s04510 (11)	scaffold_4:3262761-3263064(+) (11)	NA	P61406	Telomerase-binding protein EST1A	AT1G28260.2	Telomerase activating protein Est1 	LOC_Os08g21350.3	"cig3, putative, expressed"	Medtr2g017490.1	"cig3, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160807.1.S1_at	A	A1TS	POPTR_0002s19170	POPTR_0002s19170 (10)	scaffold_2:15090799-15091766(-) (10)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16081.1.S1_a_at	A	A1TS	POPTR_0018s03390	POPTR_0018s03390 (11)	scaffold_18:2989398-2989853(-) (11)	NA	P84104	Serine/arginine-rich splicing factor 3	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.8	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.160811.1.S1_s_at	A	A1TS	POPTR_0001s44970	POPTR_0001s44970 (11)	scaffold_1:45292271-45292553(-) (11)	NA	Q9LJU7	Purple acid phosphatase 18	AT3G20500.1	purple acid phosphatase 18 	LOC_Os03g37130.1	"ATPAP18/PAP18, putative, expressed"	Medtr3g068290.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.160811.2.S1_at	A	A1TS	POPTR_0011s14130	POPTR_0011s14130 (11)	scaffold_11:16669072-16669472(-) (11)	NA	Q9LJU7	Purple acid phosphatase 18	AT3G20500.1	purple acid phosphatase 18 	LOC_Os03g37130.1	"ATPAP18/PAP18, putative, expressed"	Medtr3g068290.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.16082.1.S1_at	A	A1TS	POPTR_0001s13160	POPTR_0001s13160 (11)	scaffold_1:10238210-10238614(-) (11)	NA	NA	NA	AT5G13260.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16082.2.S1_a_at	A	A1TS	POPTR_0003s16260	POPTR_0003s16260 (9)	scaffold_3:15840128-15841531(-) (9)	NA	NA	NA	AT5G13260.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160837.1.S1_at	A	A1TS	POPTR_0006s18610	POPTR_0006s18610 (9)	scaffold_6:17178480-17179030(+) (9)	NA	Q55A09	Probable serine/threonine-protein kinase DDB_G0272254	AT5G57610.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os02g54510.3	"protein kinase domain containing protein, expressed"	Medtr8g128470.1	Octicosapeptide/Phox/Bem1p; Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16084.1.A1_at	A	A1TS	POPTR_0010s07700	POPTR_0010s07700 (10)	scaffold_10:8694680-8695212(+) (10)	NA	P27061	Acid phosphatase 1	AT1G04040.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr1g065230.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.160840.1.S1_s_at	A	A1TS	POPTR_0001s40420	POPTR_0001s40420 (11)	scaffold_1:39846099-39846585(+) (11)	NA	Q9LRR7	"9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic"	AT3G14440.1	nine-cis-epoxycarotenoid dioxygenase 3 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160855.1.S1_at	A	A2TS	POPTR_0018s02990	POPTR_0018s02990 (11)//POPTR_0018s03010 (11)	scaffold_18:2629182-2630272(+) (11)//scaffold_18:2686015-2687105(+) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os09g30414.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16086.1.A1_at	A	A1TS	POPTR_0009s03110	POPTR_0009s03110 (10)	scaffold_9:3802025-3802395(+) (10)	NA	O23826	125 kDa kinesin-related protein	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.160864.1.S1_s_at	A	A1TS	POPTR_0006s27860	POPTR_0006s27860 (10)	scaffold_6:25711792-25712280(+) (10)	NA	Q8DJ40	Chaperone protein ClpB 1	AT2G25140.1	casein lytic proteinase B4 	LOC_Os02g08490.1	"chaperone protein clpB 1, putative, expressed"	Medtr3g138120.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.160866.1.S1_s_at	A	A1TS	POPTR_0011s14260	POPTR_0011s14260 (11)	scaffold_11:16730903-16732286(-) (11)	NA	NA	NA	AT3G20490.1	unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). 	LOC_Os04g53360.1	expressed protein	Medtr5g099880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160868.1.S1_at	A	A1MS	POPTR_0006s24580	POPTR_0006s24580 (9)	scaffold_6:23180079-23180204(+) (9)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G11850.1	Protein kinase superfamily protein 	LOC_Os02g12810.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16090.2.S1_a_at	A	A1TS	POPTR_0014s16340	POPTR_0014s16340 (11)	scaffold_14:12450334-12450753(+) (11)	NA	Q9SJ41	Zinc finger CCCH domain-containing protein 18	AT2G05160.1	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os08g03310.4	"zinc finger family protein, putative, expressed"	Medtr5g102170.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.160901.1.S1_s_at	A	A1TS	POPTR_0004s05640	POPTR_0004s05640 (11)	scaffold_4:4402139-4403959(+) (11)	NA	P43297	Cysteine proteinase RD21a	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os05g43230.1	"oryzain alpha chain precursor, putative, expressed"	Medtr1g068320.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.160916.1.S1_at	A	A1TS	POPTR_0007s05210	POPTR_0007s05210 (11)	scaffold_7:3360004-3360200(+) (11)	NA	O33513	Protein CbbY	AT4G39970.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g37940.1	"HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed"	AC235753_15.1	"HAD-superfamily hydrolase subfamily IA, variant 3 AC235753.1 88087-84841 F EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.160922.1.S1_at	A	A1TS	POPTR_0013s05850	POPTR_0013s05850 (11)	scaffold_13:4210366-4211719(-) (11)	NA	O50008	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
PtpAffx.160934.1.S1_s_at	A	A1TS	POPTR_0005s10470	POPTR_0005s10470 (11)	scaffold_5:7522135-7523164(+) (11)	NA	NA	NA	AT2G17550.1	unknown protein; Has 264 Blast hits to 258 proteins in 65 species: Archae - 5; Bacteria - 5; Metazoa - 66; Fungi - 16; Plants - 107; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os03g03860.3	expressed protein	Medtr5g024230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160969.1.S1_at	A	A1TS	POPTR_0001s45300	POPTR_0001s45300 (10)	scaffold_1:45823231-45824114(+) (10)	NA	NA	NA	AT1G32810.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g14510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160974.1.A1_at	A	A1TS	POPTR_0013s14190	POPTR_0013s14190 (11)	scaffold_13:14493949-14494421(-) (11)	NA	P53603	Formimidoyltransferase-cyclodeaminase	AT2G20830.1	transferases;folic acid binding 	LOC_Os03g38540.1	"folic acid binding protein, putative, expressed"	Medtr8g102530.1	Formiminotransferase 	GO:0008152|metabolic process	GO:0005542|folic acid binding||GO:0016740|transferase activity	NA
PtpAffx.160975.1.S1_at	A	A1MS	POPTR_0011s14850	POPTR_0011s14850 (10)	scaffold_11:17103570-17103667(-) (10)	NA	NA	NA	AT2G17410.2	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.160975.1.S1_s_at	A	A1TS	POPTR_0011s14850	POPTR_0011s14850 (11)	scaffold_11:17103655-17106566(-) (11)	NA	NA	NA	AT2G17410.2	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.160989.1.A1_at	A	A1TS	POPTR_0003s10000	POPTR_0003s10000 (10)	scaffold_3:11147549-11147995(+) (10)	NA	NA	NA	AT4G37740.1	growth-regulating factor 2 	LOC_Os04g51190.2	"growth-regulating factor, putative, expressed"	Medtr5g027250.1	QLQ 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.161.1.A1_at	A	A1TS	POPTR_0005s07930	POPTR_0005s07930 (11)	scaffold_5:5478081-5478902(+) (11)	NA	O65201	"Acyl-coenzyme A oxidase 2, peroxisomal"	AT5G65110.1	acyl-CoA oxidase 2 	LOC_Os11g39220.1	"acyl-coenzyme A oxidase, putative, expressed"	Medtr4g109110.1	"Carbohydrate kinase, PfkB; Acyl-CoA dehydrogenase C-terminal-like; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.161024.1.S1_at	A	A1TS	POPTR_0009s08290	POPTR_0009s08290 (11)	scaffold_9:7632697-7635629(-) (11)	NA	Q9FME8	Oligopeptide transporter 4	AT5G64410.1	oligopeptide transporter 4 	LOC_Os01g43940.1	"oligopeptide transporter, putative"	Medtr2g010070.1	"Peptidase aspartic, active site; Oligopeptide transporter OPT superfamily "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161051.1.S1_at	A	A1TS	POPTR_0007s06550	POPTR_0007s06550 (11)	scaffold_7:4933439-4935903(+) (11)	NA	Q06801	"4-alpha-glucanotransferase, chloroplastic/amyloplastic"	AT5G64860.1	disproportionating enzyme 	LOC_Os07g43390.1	"4-alpha-glucanotransferase, chloroplast precursor, putative, expressed"	Medtr3g144850.1	"Glycoside hydrolase, family 77 "	GO:0005975|carbohydrate metabolic process	GO:0004134|4-alpha-glucanotransferase activity	NA
PtpAffx.161070.1.S1_s_at	A	A1TS	POPTR_0004s10800	POPTR_0004s10800 (11)	scaffold_4:9356796-9357269(+) (11)	NA	Q96502	Zinc finger protein CONSTANS-LIKE 2	AT3G02380.1	CONSTANS-like 2 	LOC_Os06g16370.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr1g016230.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.161118.1.S1_s_at	A	A1TS	POPTR_0001s15530	POPTR_0001s15530 (11)	scaffold_1:12369445-12372277(+) (11)	POPTR_0003s07690 (7)	O65202	Peroxisomal acyl-coenzyme A oxidase 1	AT4G16760.1	acyl-CoA oxidase 1 	LOC_Os06g01390.1	"acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed"	Medtr8g105410.1	Acyl-CoA dehydrogenase C-terminal-like; 	GO:0006635|fatty acid beta-oxidation||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity||GO:0003997|acyl-CoA oxidase activity	GO:0005777|peroxisome
PtpAffx.161119.1.S1_at	A	A1TS	POPTR_0002s01570	POPTR_0002s01570 (11)	scaffold_2:846358-846530(-) (11)	NA	P17859	Alpha-amylase	AT1G76130.1	alpha-amylase-like 2 	LOC_Os04g33040.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
PtpAffx.161119.1.S1_s_at	A	A1TS	POPTR_0002s01570	POPTR_0002s01570 (11)	scaffold_2:846316-847247(-) (11)	NA	P17859	Alpha-amylase	AT1G76130.1	alpha-amylase-like 2 	LOC_Os04g33040.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
PtpAffx.161121.1.S1_s_at	A	A1TS	POPTR_0009s11720	POPTR_0009s11720 (11)	scaffold_9:9675558-9676152(-) (11)	NA	Q942D4	BURP domain-containing protein 3	AT1G49320.1	unknown seed protein like 1 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr3g159620.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16117.1.A1_a_at	A	A1TS	POPTR_0017s09640	POPTR_0017s09640 (11)	scaffold_17:8305657-8305975(+) (11)	NA	Q43873	Peroxidase 73	AT5G67400.1	root hair specific 19 	LOC_Os09g32964.1	"peroxidase precursor, putative, expressed"	Medtr5g015990.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.161181.1.S1_at	A	A1TS	POPTR_0006s19260	POPTR_0006s19260 (10)	scaffold_6:18254444-18254954(-) (10)	NA	Q84KP0	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G23910.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g42620.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161194.1.S1_at	A	A1TS	POPTR_0015s14330	POPTR_0015s14330 (11)	scaffold_15:13984111-13984445(+) (11)	NA	NA	NA	AT4G25360.2	TRICHOME BIREFRINGENCE-LIKE 18 	LOC_Os01g68630.1	"leaf senescence related protein, putative, expressed"	Medtr6g067370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161201.1.S1_at	A	A1TS	POPTR_0004s14530	POPTR_0004s14530 (11)	scaffold_4:15133113-15133613(-) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161219.1.A1_at	A	A1TA	POPTR_0014s12380	POPTR_0014s12380 (11)	scaffold_14:9137950-9138391(+) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.161219.2.S1_s_at	A	A1TS	POPTR_0014s12380	POPTR_0014s12380 (11)	scaffold_14:9138008-9138315(-) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.161226.1.S1_at	A	A1TS	POPTR_0001s15050	POPTR_0001s15050 (11)	scaffold_1:11891033-11892020(+) (11)	NA	P37216	"Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic"	AT4G33510.1	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 	LOC_Os03g27230.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003849|3-deoxy-7-phosphoheptulonate synthase activity	NA
PtpAffx.161228.1.S1_at	A	A1TS	POPTR_0003s13360	POPTR_0003s13360 (11)	scaffold_3:13758732-13759072(-) (11)	POPTR_0001s10060 (7)	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.161237.1.S1_at	A	A1MS	POPTR_0005s02830	POPTR_0005s02830 (9)	scaffold_5:1821443-1821967(+) (9)	NA	O80795	Probable inactive receptor-like protein kinase At1g65250	AT3G52530.1	Protein kinase superfamily protein 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161240.1.S1_s_at	A	A1TS	POPTR_0007s05300	POPTR_0007s05300 (11)	scaffold_7:3412489-3414105(+) (11)	POPTR_0005s07560 (7)	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os02g18320.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr3g101870.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.161248.1.S1_s_at	A	A1TS	POPTR_0013s06790	POPTR_0013s06790 (11)	scaffold_13:5490413-5491701(-) (11)	NA	NA	NA	AT5G17670.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g03720.1	expressed protein	Medtr3g163900.1	PGAP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161256.1.S1_at	A	A1MS	POPTR_0008s06070	POPTR_0008s06070 (9)	scaffold_8:3587747-3588151(-) (9)	NA	Q54TS4	Protein YIPF1 homolog	AT2G39805.1	Integral membrane Yip1 family protein 	LOC_Os05g38180.4	"Yip1 domain containing protein, expressed"	Medtr5g088310.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161290.2.S1_a_at	A	A1TS	POPTR_0006s23740	POPTR_0006s23740 (10)	scaffold_6:22452875-22453910(+) (10)	NA	NA	NA	AT2G26340.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g07960.1	expressed protein	Medtr3g139290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161291.1.S1_at	A	A1TS	POPTR_0018s06720	POPTR_0018s06720 (11)	scaffold_18:6770930-6771558(-) (11)	NA	Q94AA4	6-phosphofructokinase 3	AT4G26270.1	phosphofructokinase 3 	LOC_Os06g05860.1	"6-phosphofructokinase, putative, expressed"	Medtr3g128190.1	Phosphofructokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161294.1.S1_at	A	A1TS	POPTR_0012s04580	POPTR_0012s04580 (11)	scaffold_12:3887600-3888060(-) (11)	NA	P26569	Histone H1.2	AT3G18035.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os05g51850.1	"AT hook-containing DNA-binding protein, putative, expressed"	Medtr4g155220.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.161298.1.S1_at	A	A1TS	POPTR_0009s03190	POPTR_0009s03190 (11)	scaffold_9:3868443-3868962(-) (11)	NA	Q9SIB2	3-ketoacyl-CoA synthase 12	AT2G28630.1	3-ketoacyl-CoA synthase 12 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079200.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.161309.1.S1_at	A	A1TS	POPTR_0002s13920	POPTR_0002s13920 (9)	scaffold_2:10328547-10328579(+) (9)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g41880.1	"hyaluronan/mRNA binding family domain containing protein, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161309.1.S1_s_at	A	A1TS	POPTR_0002s13920	POPTR_0002s13920 (11)	scaffold_2:10327822-10328463(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g41880.1	"hyaluronan/mRNA binding family domain containing protein, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161322.1.S1_at	A	A1TS	POPTR_0013s14330	POPTR_0013s14330 (11)	scaffold_13:14559251-14560062(+) (11)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G28220.1	NAD(P)H dehydrogenase B1 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.161323.1.S1_a_at	A	A1TS	POPTR_0018s03090	POPTR_0018s03090 (11)	scaffold_18:2752272-2754485(+) (11)	NA	Q8RXV3	Probable protein phosphatase 2C 59	AT4G31750.1	HOPW1-1-interacting 2 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr1g016250.2	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161323.2.S1_s_at	A	A1TS	POPTR_0006s28340	POPTR_0006s28340 (11)	scaffold_6:26050233-26052404(+) (11)	NA	Q8RXV3	Probable protein phosphatase 2C 59	AT4G31750.1	HOPW1-1-interacting 2 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161334.1.S1_at	A	A2TS	POPTR_0006s04190	POPTR_0006s04190 (11)//POPTR_0016s04010 (10)	scaffold_16:2250430-2251793(-) (9)//scaffold_6:2846394-2847771(-) (11)	NA	P93002	Regulatory protein NPR1	AT2G41370.1	Ankyrin repeat family protein / BTB/POZ domain-containing protein 	LOC_Os01g72020.1	"BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr7g107020.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.16134.1.S1_at	A	A1TS	POPTR_0002s10640	POPTR_0002s10640 (10)	scaffold_2:7729720-7730242(-) (10)	NA	Q98G36	Argininosuccinate lyase 1	AT5G10920.1	L-Aspartase-like family protein 	LOC_Os03g19280.1	"argininosuccinate lyase, putative, expressed"	Medtr3g149500.1	Fumarate lyase; Argininosuccinate lyase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.161342.1.S1_at	A	A1TS	POPTR_0015s10290	POPTR_0015s10290 (11)	scaffold_15:11247859-11247963(+) (11)	POPTR_0012s09520 (7)	Q86TW2	Uncharacterized aarF domain-containing protein kinase 1	AT5G50330.1	Protein kinase superfamily protein 	LOC_Os01g67720.1	"ABC1 family domain containing protein, putative, expressed"	Medtr8g109830.1	"Protein kinase; Cytochrome c, monohaem "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161342.1.S1_s_at	A	A1TS	POPTR_0015s10290	POPTR_0015s10290 (11)	scaffold_15:11248741-11249256(+) (11)	POPTR_0012s09520 (6)	Q86TW2	Uncharacterized aarF domain-containing protein kinase 1	AT5G50330.1	Protein kinase superfamily protein 	LOC_Os01g67720.1	"ABC1 family domain containing protein, putative, expressed"	Medtr8g109830.1	"Protein kinase; Cytochrome c, monohaem "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161349.1.S1_s_at	A	A1TS	POPTR_0008s18180	POPTR_0008s18180 (11)	scaffold_8:12181197-12182967(+) (11)	NA	NA	NA	AT3G26090.1	G-protein coupled receptors;GTPase activators 	NA	NA	Medtr3g102890.1	Regulator of G protein signalling 	NA	GO:0004871|signal transducer activity	NA
PtpAffx.161358.1.S1_s_at	A	A1TS	POPTR_0001s37580	POPTR_0001s37580 (11)	scaffold_1:36549719-36550120(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161360.1.S1_at	A	A1MS	POPTR_0010s15770	POPTR_0010s15770 (10)	scaffold_10:14887720-14888704(-) (10)	NA	O04425	Flowering time control protein FCA	AT4G16280.2	RNA binding;abscisic acid binding 	LOC_Os09g03610.2	"flowering time control protein FCA, putative, expressed"	Medtr8g136920.1	RNA-binding region RNP-1 (RNA recognition motif); WW/Rsp5/WWP 	NA	GO:0003676|nucleic acid binding||GO:0005515|protein binding	NA
PtpAffx.161372.1.S1_s_at	A	A1TS	POPTR_0001s29240	POPTR_0001s29240 (11)	scaffold_1:27968489-27968768(-) (11)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G73150.1	global transcription factor group E3 	LOC_Os01g11580.1	"bromodomain containing protein, expressed"	Medtr4g121770.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161384.1.S1_at	A	A1TS	POPTR_0006s01160	POPTR_0006s01160 (10)	scaffold_6:642467-643028(-) (10)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161389.1.A1_at	A	A1TS	POPTR_0010s12640	POPTR_0010s12640 (10)	scaffold_10:12623328-12625302(+) (10)	NA	Q8N0Z6	Tetratricopeptide repeat protein 5	NA	NA	LOC_Os01g32184.1	"tetratricopeptide repeat protein 5, putative, expressed"	Medtr1g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161390.1.S1_at	A	A1TS	POPTR_0001s15410	POPTR_0001s15410 (11)	scaffold_1:12249015-12249957(+) (11)	NA	Q8L7W2	Nudix hydrolase 8	AT5G47240.1	nudix hydrolase homolog 8 	LOC_Os04g46280.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g105240.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.161392.1.S1_s_at	A	A1TS	POPTR_0010s07920	POPTR_0010s07920 (11)	scaffold_10:8886950-8887622(+) (11)	POPTR_0008s16970 (6)	O22795	"50S ribosomal protein L28, chloroplastic"	AT2G33450.1	Ribosomal L28 family 	LOC_Os05g01110.1	"ribosomal protein L28 protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.161399.1.S1_at	A	A1TS	POPTR_0012s05410	POPTR_0012s05410 (9)	scaffold_12:5053364-5053707(-) (11)	NA	Q9C9C4	"Enolase 1, chloroplastic"	AT1G74030.1	enolase 1 	LOC_Os09g20820.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
PtpAffx.161404.1.S1_s_at	A	A1TS	POPTR_0006s24260	POPTR_0006s24260 (11)	scaffold_6:22906144-22906546(-) (11)	NA	Q84MC2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8	AT5G11950.2	Putative lysine decarboxylase family protein 	LOC_Os01g51210.1	"uncharacterized protein PA4923, putative, expressed"	Medtr1g019920.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161405.1.S1_s_at	A	A1TS	POPTR_0005s05290	POPTR_0005s05290 (11)	scaffold_5:3499690-3502335(-) (11)	NA	Q5M7J9	Tetratricopeptide repeat protein 35	AT3G04830.1	Protein prenylyltransferase superfamily protein 	LOC_Os02g03470.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr7g140640.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161408.1.S1_s_at	A	A1TS	POPTR_0010s18980	POPTR_0010s18980 (11)	scaffold_10:17046903-17047409(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G49690.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161412.1.S1_at	A	A1TS	POPTR_0004s05380	POPTR_0004s05380 (10)	scaffold_4:4127559-4127976(-) (10)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g49830.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.161413.1.S1_at	A	A1TS	POPTR_0003s08210	POPTR_0003s08210 (11)	scaffold_3:9627435-9627747(-) (11)	NA	NA	NA	AT2G44730.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os10g41460.1	"transcription factor like protein, putative, expressed"	Medtr7g092760.1	MADF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161419.1.S1_at	A	A1TS	POPTR_0012s11640	POPTR_0012s11640 (10)	scaffold_12:11985881-11987408(-) (10)	NA	B9NAN0	"Arginine biosynthesis bifunctional protein ArgJ, chloroplastic"	AT2G37500.1	arginine biosynthesis protein ArgJ family 	LOC_Os03g17120.1	"arginine biosynthesis bifunctional protein argJ 1, putative, expressed"	AC233662_37.1	Arginine biosynthesis protein ArgJ AC233662.1 191889-184516 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006526|arginine biosynthetic process	GO:0004358|glutamate N-acetyltransferase activity	NA
PtpAffx.161420.1.S1_at	A	A1TS	POPTR_0004s07230	POPTR_0004s07230 (9)	scaffold_4:5965516-5966246(+) (9)	NA	Q01332	Beta-carotene hydroxylase	AT4G25700.1	beta-hydroxylase 1 	LOC_Os03g03370.1	"fatty acid hydroxylase, putative, expressed"	Medtr1g126460.2	Carotene hydroxylase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.161428.1.S1_at	A	A1TS	POPTR_0003s21010	POPTR_0003s21010 (11)	scaffold_3:19333270-19334031(-) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os03g59250.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161428.2.S1_a_at	A	A2TS	POPTR_0001s04120	POPTR_0003s21010 (11)//POPTR_0001s04120 (11)	scaffold_1:3255192-3256478(-) (11)//scaffold_3:19333463-19334862(-) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os03g59250.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161428.2.S1_at	A	A1TS	POPTR_0001s04120	POPTR_0001s04120 (11)	scaffold_1:3255475-3256366(-) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os03g59250.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16145.1.S1_at	A	A1TS	POPTR_0008s13480	POPTR_0008s13480 (11)	scaffold_8:8866918-8868196(-) (11)	NA	NA	NA	AT2G01755.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 120 Blast hits to 120 proteins in 52 species: Archae - 0; Bacteria - 80; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). 	LOC_Os03g50530.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16148.1.S1_at	A	A1TS	POPTR_0001s27550	POPTR_0001s27550 (10)	scaffold_1:26444912-26445318(-) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37980.1	elicitor-activated gene 3-1 	LOC_Os09g23540.1	"dehydrogenase, putative, expressed"	Medtr5g032770.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.161491.2.S1_s_at	A	A2TS	POPTR_0007s02500	POPTR_0017s06460 (11)//POPTR_0007s02500 (11)	scaffold_17:4951570-4951763(-) (11)//scaffold_7:1479140-1479333(-) (11)	NA	P15479	Isocitrate lyase	AT3G21720.1	isocitrate lyase 	LOC_Os07g34520.1	"isocitrate lyase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.1615.1.S1_x_at	A	A1TS	POPTR_0004s22810	POPTR_0004s22810 (11)	scaffold_4:21677239-21677807(+) (11)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.1615.2.S1_x_at	A	A1TS	POPTR_0004s22810	POPTR_0004s22810 (11)	scaffold_4:21677249-21677796(+) (11)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.1615.3.S1_s_at	A	A1TS	POPTR_0005s22780	POPTR_0005s22780 (11)	scaffold_5:21685680-21686046(+) (11)	NA	Q9LR64	"Thylakoid lumenal protein At1g03610, chloroplastic"	AT1G03600.1	photosystem II family protein 	LOC_Os03g21560.1	"photosystem II 11 kD protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161500.1.S1_at	A	A1TS	POPTR_0019s09520	POPTR_0019s09520 (11)	scaffold_19:11095085-11096370(+) (11)	NA	Q9C809	"Probable beta-1,3-galactosyltransferase 8"	AT1G33430.1	Galactosyltransferase family protein 	LOC_Os05g35266.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.16153.1.S1_at	A	A1TS	POPTR_0014s13650	POPTR_0014s13650 (11)	scaffold_14:10011925-10012275(-) (11)	NA	Q6MC06	Tyrosyl-tRNA synthetase	AT3G02660.1	"Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial "	LOC_Os01g31610.1	"tyrosyl-tRNA synthetase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005737|cytoplasm
PtpAffx.161540.1.S1_s_at	A	A1TS	POPTR_0005s20150	POPTR_0005s20150 (11)	scaffold_5:19209588-19209726(+) (11)	NA	Q70DU8	Aldehyde dehydrogenase family 3 member H1	AT1G44170.2	aldehyde dehydrogenase 3H1 	LOC_Os11g08300.1	"aldehyde dehydrogenase, putative, expressed"	Medtr3g100730.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.161544.2.S1_a_at	A	A1TS	POPTR_0019s06020	POPTR_0019s06020 (11)	scaffold_19:6477560-6478505(-) (11)	NA	Q31ME3	RNA polymerase sigma factor rpoD2	AT1G64860.1	sigma factor A 	LOC_Os08g06630.1	"RNA polymerase sigma factor, putative, expressed"	Medtr3g163870.1	"Winged helix repressor DNA-binding; RNA polymerase sigma factor RpoS, proteobacteria; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.161548.1.S1_s_at	A	A1TS	POPTR_0001s33920	POPTR_0001s33920 (11)	scaffold_1:32085493-32086142(+) (11)	NA	P92942	Chloride channel protein CLC-b	AT3G27170.1	chloride channel B 	LOC_Os12g25200.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr6g025600.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.16155.1.S1_a_at	A	A1TS	POPTR_0001s13500	POPTR_0001s13500 (11)	scaffold_1:10575760-10575888(-) (11)	NA	Q9LSD5	Transcription factor TCP20	AT3G27010.1	"TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 "	LOC_Os01g69980.1	"TCP family transcription factor, putative, expressed"	Medtr7g018180.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16157.1.S1_s_at	A	A1TS	POPTR_0006s10240	POPTR_0006s10240 (11)	scaffold_6:7646264-7646298(+) (11)	POPTR_0016s12470 (7)	Q9SDW0	Trihelix transcription factor GT-3a	AT5G01380.1	Homeodomain-like superfamily protein 	LOC_Os04g51320.1	"transcription factor TF2, putative, expressed"	Medtr5g026680.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161577.1.S1_at	A	A1TS	POPTR_0002s07330	POPTR_0002s07330 (9)	scaffold_2:5003373-5003670(+) (9)	NA	O49292	"PsbP domain-containing protein 4, chloroplastic"	AT1G77090.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os12g08830.1	"thylakoid lumenal 29.8 kDa protein, putative, expressed"	Medtr3g125340.1	"thylakoid lumenal 29.8 kDa protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161604.1.S1_s_at	A	A1TS	POPTR_0001s03040	POPTR_0001s03040 (11)	scaffold_1:2394784-2397656(-) (11)	NA	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.161607.1.S1_at	A	A1TS	POPTR_0001s40390	POPTR_0001s40390 (11)	scaffold_1:39797942-39798930(+) (11)	NA	Q9LKA5	"Uncharacterized protein At3g15000, mitochondrial"	AT3G15000.1	cobalt ion binding 	LOC_Os09g33480.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161620.1.S1_at	A	A1TS	POPTR_0004s03720	POPTR_0004s03720 (9)	scaffold_4:2595910-2597166(-) (9)	NA	Q6R2K3	Protein STRUBBELIG-RECEPTOR FAMILY 3	AT4G03390.1	STRUBBELIG-receptor family 3 	LOC_Os07g37810.1	"STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed"	Medtr2g014380.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.161631.1.S1_s_at	A	A1TS	POPTR_0004s24430	POPTR_0004s24430 (11)	scaffold_4:23099018-23099218(-) (11)	NA	Q9FHK0	F-box protein SKIP31	AT5G45360.1	F-box family protein 	LOC_Os06g49530.1	"OsFBX206 - F-box domain containing protein, expressed"	Medtr5g025590.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161637.2.S1_s_at	A	A2TS	POPTR_0007s02150	POPTR_0007s02150 (11)//POPTR_0017s06130 (11)	scaffold_17:4760363-4761177(+) (11)//scaffold_7:1276137-1276993(+) (11)	NA	NA	NA	AT1G05870.4	Protein of unknown function (DUF1685) 	LOC_Os11g17930.1	expressed protein	Medtr1g146930.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161640.1.S1_at	A	A1TS	POPTR_0006s27640	POPTR_0006s27640 (11)	scaffold_6:25488149-25488949(+) (11)	NA	Q0V7T5	Probable receptor-like protein kinase At1g80640	AT4G32000.2	Protein kinase superfamily protein 	LOC_Os05g25540.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g012230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.161644.1.S1_s_at	A	A1TS	POPTR_0001s11360	POPTR_0001s11360 (11)	scaffold_1:8809221-8809283(-) (11)	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.161656.1.S1_s_at	A	A1TS	POPTR_0005s25310	POPTR_0005s25310 (11)	scaffold_5:23613457-23613892(+) (11)	POPTR_0002s03300 (7)	NA	NA	AT1G75400.1	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161658.1.S1_at	A	A1TS	POPTR_0002s03100	POPTR_0002s03100 (11)	scaffold_2:1927728-1928326(-) (11)	NA	B8E0B2	GTPase obg	AT5G18570.1	GTP1/OBG family protein 	LOC_Os03g58540.1	"spo0B-associated GTP-binding protein, putative, expressed"	Medtr1g028590.1	GTP1/OBG domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.161659.1.S1_s_at	A	A1TS	POPTR_0001s40690	POPTR_0001s40690 (11)	scaffold_1:40280426-40281930(+) (11)	NA	Q16401	26S proteasome non-ATPase regulatory subunit 5	AT3G15180.1	ARM repeat superfamily protein 	LOC_Os05g48340.1	"proteasome-related, putative, expressed"	Medtr8g071250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161660.1.S1_s_at	A	A1TS	POPTR_0001s25230	POPTR_0001s25230 (11)	scaffold_1:24410910-24412633(+) (11)	NA	NA	NA	AT5G59210.2	myosin heavy chain-related 	LOC_Os03g16120.1	"myosin heavy chain-related, putative, expressed"	Medtr2g117320.1	"t-snare, identical "	NA	NA	GO:0016020|membrane
PtpAffx.161661.1.S1_at	A	A1TS	POPTR_0005s11260	POPTR_0005s11260 (11)	scaffold_5:8154878-8155337(-) (11)	NA	Q7Z569	BRCA1-associated protein	AT2G26000.2	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g09060.1	"BRCA1-associated protein, putative, expressed"	Medtr2g127260.1	"Zinc finger, UBP-type; Zinc finger, RING-type; BRCA1-associated 2 "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.161661.1.S1_s_at	A	A1TS	POPTR_0007s08600	POPTR_0007s08600 (11)	scaffold_7:7456850-7460377(+) (11)	NA	Q7Z569	BRCA1-associated protein	AT2G26000.2	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g09060.1	"BRCA1-associated protein, putative, expressed"	Medtr2g127260.1	"Zinc finger, UBP-type; Zinc finger, RING-type; BRCA1-associated 2 "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.161722.1.S1_at	A	A1TS	POPTR_0007s15360	POPTR_0007s15360 (11)	scaffold_7:14924060-14924584(+) (11)	NA	O49543	"Cysteine desulfurase 1, mitochondrial"	AT5G65720.1	nitrogen fixation S (NIFS)-like 1 	LOC_Os09g16910.3	"cysteine desulfurase 1, mitochondrial precursor, putative, expressed"	Medtr5g014960.1	"Aminotransferase, class V; "	GO:0008152|metabolic process	NA	NA
PtpAffx.161726.1.S1_at	A	A1TS	POPTR_0009s05950	POPTR_0009s05950 (9)	scaffold_9:5905564-5906181(-) (9)	NA	Q9SPL4	Vicilin-like antimicrobial peptides 2-2	AT2G28490.1	RmlC-like cupins superfamily protein 	LOC_Os03g21790.1	"cupin domain containing protein, expressed"	Medtr2g111050.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.161729.1.S1_s_at	A	A1TS	POPTR_0005s23670	POPTR_0005s23670 (11)	scaffold_5:22395544-22395861(-) (11)	NA	Q55DF5	JmjC domain-containing protein D	AT5G19840.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g56640.3	"transcription factor jumonji, putative, expressed"	Medtr1g083710.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161733.1.S1_at	A	A1TS	POPTR_0016s08080	POPTR_0016s08080 (10)	scaffold_16:5913798-5915004(+) (10)	NA	P51566	Serine/threonine-protein kinase AFC1	AT3G53570.4	FUS3-complementing gene 1 	LOC_Os01g62080.2	"serine/threonine-protein kinase AFC1, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16175.1.S1_at	A	A1TA	POPTR_0013s13180	POPTR_0013s13180 (9)	scaffold_13:13734649-13735049(-) (9)	NA	Q5H8A6	Ion channel CASTOR	AT5G49960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g62650.1	"ion channel DMI1-like, chloroplast precursor, putative, expressed"	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161765.1.S1_at	A	A1TS	POPTR_0019s14200	POPTR_0019s14200 (10)	scaffold_19:14943688-14944120(-) (10)	NA	NA	NA	AT4G03260.2	Outer arm dynein light chain 1 protein 	LOC_Os07g01550.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.161782.1.S1_at	A	A1TS	POPTR_0001s38220	POPTR_0001s38220 (11)	scaffold_1:37302470-37305260(-) (11)	NA	Q0VC50	"Reticulon-4-interacting protein 1, mitochondrial"	AT3G15090.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os01g54940.1	"dehydrogenase, putative, expressed"	Medtr4g042660.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.16179.1.S1_at	A	A1MS	POPTR_0016s05500	POPTR_0016s05500 (9)	scaffold_16:3431641-3431894(+) (9)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161798.1.S1_at	A	A1TS	POPTR_0005s08650	POPTR_0005s08650 (11)	scaffold_5:6018909-6019174(-) (11)	NA	Q9SJ05	"Shikimate kinase, chloroplastic"	AT2G21940.4	shikimate kinase 1 	LOC_Os04g54800.1	"shikimate kinase, putative, expressed"	NA	NA	NA	GO:0004765|shikimate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.161801.1.S1_at	A	A1TS	POPTR_0005s24020	POPTR_0005s24020 (11)	scaffold_5:22688416-22690472(+) (11)	NA	Q9UTC5	Putative uridine kinase C227.14	AT1G03030.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g40880.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr4g103640.1	"phosphoribulokinase/uridine kinase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161809.1.S1_at	A	A1TS	POPTR_0005s11870	POPTR_0005s11870 (9)	scaffold_5:8637585-8639157(-) (9)	POPTR_0007s13910 (6)	Q9FWX2	NAC domain-containing protein 7	AT2G18060.1	vascular related NAC-domain protein 1 	LOC_Os03g03540.1	"no apical meristem protein, putative, expressed"	Medtr5g021640.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.161822.1.A1_s_at	A	A2TS	POPTR_0017s06220	POPTR_0017s06220 (11)//POPTR_0017s09560 (11)	scaffold_17:4803649-4804402(+) (11)//scaffold_17:8169558-8170282(-) (11)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr1g087380.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.161836.1.A1_at	A	A1MS	POPTR_0014s12750	POPTR_0014s12750 (11)	scaffold_14:9401046-9401225(-) (11)	NA	Q54CS8	Peroxisomal biogenesis factor 6	AT1G03000.1	peroxin 6 	LOC_Os04g52690.3	"AAA family ATPase, putative, expressed"	Medtr7g106320.1	"AAA ATPase, central region; L-lactate dehydrogenase "	NA	GO:0005524|ATP binding	NA
PtpAffx.161836.2.A1_at	A	A1TS	POPTR_0014s12750	POPTR_0014s12750 (9)	scaffold_14:9400755-9400847(-) (9)	NA	Q54CS8	Peroxisomal biogenesis factor 6	AT1G03000.1	peroxin 6 	LOC_Os04g52690.3	"AAA family ATPase, putative, expressed"	Medtr7g106320.1	"AAA ATPase, central region; L-lactate dehydrogenase "	NA	GO:0005524|ATP binding	NA
PtpAffx.16185.1.S1_a_at	A	A1TS	POPTR_0010s13000	POPTR_0010s13000 (11)	scaffold_10:12913336-12913651(-) (11)	NA	Q9C9N5	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830	AT2G01210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g33090.1	expressed protein	Medtr4g011740.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.161852.1.A1_at	A	A2TS	POPTR_0006s11680	POPTR_0946s00200 (11)//POPTR_0006s11680 (11)	scaffold_6:8895145-8895572(-) (11)//scaffold_946:7014-7441(-) (11)	NA	Q8GYY1	Heat stress transcription factor A-3	AT5G03720.1	heat shock transcription factor A3 	LOC_Os02g32590.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.161856.1.A1_s_at	A	A1TS	POPTR_0005s23170	POPTR_0005s23170 (11)	scaffold_5:21987312-21987912(-) (11)	NA	Q2MY58	Patatin group A-3	AT3G63200.1	PATATIN-like protein 9 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g086350.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.161857.1.A1_at	A	A1TS	POPTR_0011s15690	POPTR_0011s15690 (9)	scaffold_11:17787442-17787850(+) (9)	NA	Q14008	Cytoskeleton-associated protein 5	AT2G35630.1	ARM repeat superfamily protein 	LOC_Os01g60040.2	"HEAT repeat family protein, putative, expressed"	Medtr8g026460.1	VHS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161884.1.A1_at	A	A1TS	POPTR_0017s14210	POPTR_0017s14210 (11)	scaffold_17:14351102-14351557(-) (11)//scaffold_824:6847-7302(+) (11)	NA	NA	NA	AT1G67170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). 	LOC_Os02g09890.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g121450.1	"Protein kinase PKN/PRK1, effector, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161922.1.A1_s_at	A	A2TS	POPTR_0008s15890	POPTR_0008s15890 (11)//POPTR_0010s09130 (11)	scaffold_10:9974073-9974132(+) (11)//scaffold_8:10603803-10603862(-) (11)	NA	Q9LIK7	"Putative calcium-transporting ATPase 13, plasma membrane-type"	AT3G22910.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.161941.1.A1_at	A	A1MS	POPTR_0013s04730	POPTR_0013s04730 (11)	scaffold_13:3257710-3259296(-) (11)	NA	Q9DAA6	3'-5' exoribonuclease CSL4 homolog	AT5G38890.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os02g57070.1	"3-5 exoribonuclease CSL4, putative, expressed"	Medtr1g093330.1	"3'-5' exoribonuclease CSL4 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161969.1.A1_at	A	A1TS	POPTR_0009s05150	POPTR_0009s05150 (11)	scaffold_9:5312985-5313486(+) (11)	NA	Q9LUZ4	Zinc finger CCCH domain-containing protein 66	AT5G58620.1	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g079420.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.161974.1.A1_at	A	A1TA	POPTR_0009s05510	POPTR_0009s05510 (9)	scaffold_9:5603233-5603554(+) (9)	NA	Q94CJ8	Zinc finger CCCH domain-containing protein 55	AT5G12440.3	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os03g21140.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr5g008940.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.161977.1.A1_at	A	A1TS	POPTR_0010s12010	POPTR_0010s12010 (10)	scaffold_10:12116259-12116682(-) (10)	NA	NA	NA	AT1G70750.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161984.1.A1_at	A	A1MS	POPTR_0010s09830	POPTR_0010s09830 (11)	scaffold_10:10453415-10453569(-) (11)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16199.1.S1_s_at	A	A1TS	POPTR_0005s05100	POPTR_0005s05100 (11)	scaffold_5:3396412-3396763(-) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT3G23750.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr3g104610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.161992.1.A1_at	A	A1TS	POPTR_0001s38310	POPTR_0001s38310 (11)	scaffold_1:37398830-37399414(+) (11)	NA	Q9ZRA2	"Homogentisate 1,2-dioxygenase"	AT5G54080.2	"homogentisate 1,2-dioxygenase "	LOC_Os06g01360.1	"homogentisate 1,2-dioxygenase, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006570|tyrosine metabolic process||GO:0006559|L-phenylalanine catabolic process	"GO:0004411|""homogentisate 1,2-dioxygenase activity"""	NA
PtpAffx.161998.1.A1_at	A	A1MS	POPTR_0015s07930	POPTR_0015s07930 (11)	scaffold_15:9204109-9204610(+) (11)	NA	Q9LV17	Transcription factor bHLH79	AT5G62610.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g09590.1	"bHLH transcription factor, putative"	Medtr8g074580.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.162.1.A1_a_at	A	A1TS	POPTR_0019s13480	POPTR_0019s13480 (10)	scaffold_19:14390449-14395993(+) (11)	NA	NA	NA	AT1G11120.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os07g37820.1	expressed protein	Medtr4g125590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162002.1.A1_s_at	A	A1TS	POPTR_0001s16790	POPTR_0001s16790 (10)	scaffold_1:13589112-13589210(+) (10)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.162004.1.A1_at	A	A1TS	POPTR_0002s24490	POPTR_0002s24490 (11)	scaffold_2:21842713-21843451(-) (11)	NA	Q96L91	E1A-binding protein p400	AT3G24880.1	"Helicase/SANT-associated, DNA binding protein "	LOC_Os08g08000.1	"DNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162030.1.A1_s_at	A	A1TS	POPTR_0005s07740	POPTR_0005s07740 (9)	scaffold_5:5302515-5302548(+) (9)	NA	Q9XEE2	Annexin D2	AT5G65020.1	annexin 2 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.16204.1.A1_at	A	A1TS	POPTR_0017s07000	POPTR_0017s07000 (10)	scaffold_17:5449271-5451496(-) (10)	NA	P58223	KH domain-containing protein At4g18375	AT5G64390.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr2g009690.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.162040.1.S1_at	A	A1TS	POPTR_0006s00340	POPTR_0006s00340 (11)	scaffold_6:129179-129671(+) (11)	NA	Q8RB67	Chaperone protein dnaJ	AT3G13310.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr8g089870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.162043.1.S1_at	A	A1TS	POPTR_0014s06290	POPTR_0014s06290 (11)	scaffold_14:4790220-4790876(-) (11)	NA	Q9BTW9	Tubulin-specific chaperone D	AT3G60740.1	ARM repeat superfamily protein 	LOC_Os10g36490.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162047.1.S1_s_at	A	A1TS	POPTR_0009s01740	POPTR_0009s01740 (10)	scaffold_9:2259517-2260009(-) (10)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162051.1.S1_a_at	A	A1MS	POPTR_0015s10890	POPTR_0015s10890 (9)	scaffold_15:11655682-11655763(-) (9)	NA	NA	NA	AT4G24910.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g103910.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162072.1.S1_s_at	A	A1TS	POPTR_0004s12380	POPTR_0004s12380 (11)	scaffold_4:11483989-11484303(-) (11)	NA	Q9FLZ8	EID1-like F-box protein 2	AT5G39360.1	EID1-like 2 	LOC_Os07g40710.2	"circadian clock coupling factor-related, putative, expressed"	Medtr6g013970.1	"EDL1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162113.1.S1_s_at	A	A1TS	POPTR_0010s20050	POPTR_0010s20050 (11)	scaffold_10:17806060-17806763(-) (11)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g089140.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.162152.1.S1_at	A	A1TS	POPTR_0018s00410	POPTR_0018s00410 (11)	scaffold_18:313343-314236(-) (11)	NA	NA	NA	AT3G22810.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os01g13070.1	expressed protein	AC225517_20.1	Pleckstrin homology-type AC225517.6 91599-94192 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162165.1.S1_at	A	A1TS	POPTR_0008s11450	POPTR_0008s11450 (9)	scaffold_8:7271580-7271902(-) (9)	NA	Q6NMF0	CLAVATA3/ESR (CLE)-related protein 13	AT1G73965.1	CLAVATA3/ESR-RELATED 13 	NA	NA	Medtr1g118110.1	"CLE12 ; receptor binding {Arabidopsi, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16221.1.A1_a_at	A	A1TS	POPTR_0011s04380	POPTR_0011s04380 (11)	scaffold_11:4369189-4369401(-) (11)	NA	NA	NA	AT1G61260.1	Protein of unknown function (DUF761) 	LOC_Os07g37620.1	"fiber expressed protein, putative, expressed"	Medtr2g095300.1	"Protein of unknown function DUF761, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162211.1.A1_at	A	A1TA	POPTR_0004s18020	POPTR_0004s18020 (11)	scaffold_4:18034525-18035008(+) (11)	NA	P81393	Myb-related protein 308	AT4G38620.1	myb domain protein 4 	LOC_Os09g36730.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162211.2.S1_at	A	A1TS	POPTR_0004s18020	POPTR_0004s18020 (11)	scaffold_4:18034241-18034618(-) (11)	NA	P81393	Myb-related protein 308	AT4G38620.1	myb domain protein 4 	LOC_Os09g36730.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162239.1.S1_s_at	A	A2TS	POPTR_0008s08410	POPTR_0008s08410 (11)//POPTR_0010s17860 (9)	scaffold_10:16306382-16308138(+) (9)//scaffold_8:5213206-5214812(-) (11)	NA	Q42961	"Phosphoglycerate kinase, chloroplastic"	AT3G12780.1	phosphoglycerate kinase 1 	LOC_Os05g41640.2	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077510.1	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
PtpAffx.162250.1.S1_at	A	A1TS	POPTR_0001s17620	POPTR_0001s17620 (11)	scaffold_1:14431806-14432550(+) (11)	NA	O04706	Gibberellin 20 oxidase 1-B	AT1G52790.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr7g107560.1	Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.162259.1.S1_at	A	A1TS	POPTR_0006s11570	POPTR_0006s11570 (10)	scaffold_6:8777657-8777691(-) (10)	NA	Q43497	Monodehydroascorbate reductase	AT3G52880.1	monodehydroascorbate reductase 1 	LOC_Os09g39380.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.162259.1.S1_s_at	A	A1TS	POPTR_0006s11570	POPTR_0006s11570 (11)	scaffold_6:8777459-8778957(-) (11)	NA	Q43497	Monodehydroascorbate reductase	AT3G52880.1	monodehydroascorbate reductase 1 	LOC_Os09g39380.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.162261.1.S1_s_at	A	A1TS	POPTR_0001s19180	POPTR_0001s19180 (11)	scaffold_1:16623248-16624753(-) (11)	NA	P27061	Acid phosphatase 1	AT4G25150.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr8g016170.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.162289.1.S1_at	A	A1TS	POPTR_0011s10700	POPTR_0011s10700 (9)	scaffold_11:13276759-13277046(-) (9)	NA	P73555	Uncharacterized membrane protein sll0875	AT1G78620.1	"Protein of unknown function DUF92, transmembrane "	LOC_Os01g52864.1	"transmembrane protein, putative, expressed"	Medtr7g062060.1	"Protein of unknown function DUF92, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162289.2.S1_a_at	A	A1TS	POPTR_0011s10700	POPTR_0011s10700 (11)	scaffold_11:13279089-13279166(-) (11)	NA	P73555	Uncharacterized membrane protein sll0875	AT1G78620.1	"Protein of unknown function DUF92, transmembrane "	LOC_Os01g52864.1	"transmembrane protein, putative, expressed"	Medtr7g062060.1	"Protein of unknown function DUF92, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162293.1.S1_at	A	A1TS	POPTR_0009s13750	POPTR_0009s13750 (11)	scaffold_9:10901415-10902757(-) (11)	NA	O22468	WD-40 repeat-containing protein MSI2	AT2G16780.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162299.1.S1_at	A	A1TS	POPTR_0014s12630	POPTR_0014s12630 (11)	scaffold_14:9294865-9295331(-) (11)	NA	NA	NA	AT1G02900.1	rapid alkalinization factor 1 	LOC_Os01g15320.1	"RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed"	Medtr7g138890.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162311.1.S1_at	A	A1TS	POPTR_0018s06700	POPTR_0018s06700 (10)	scaffold_18:6741699-6742550(-) (10)	NA	Q8H1S0	Inositol oxygenase 4	AT4G26260.1	myo-inositol oxygenase 4 	LOC_Os06g36560.1	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
PtpAffx.162327.1.S1_at	A	A1TS	POPTR_0001s03680	POPTR_0001s03680 (11)	scaffold_1:2948292-2948690(+) (11)//scaffold_1:9913060-9913457(-) (9)//scaffold_1:11828061-11828459(-) (10)	POPTR_0001s15000 (6)	Q9M7K4	Potassium transporter 5	AT4G13420.1	high affinity K+ transporter 5 	LOC_Os01g70490.1	"potassium transporter, putative, expressed"	Medtr4g136710.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.162338.1.S1_at	A	A1TS	POPTR_0002s14120	POPTR_0002s14120 (11)	scaffold_2:10470282-10471047(-) (11)	NA	NA	NA	AT2G44670.1	Protein of unknown function (DUF581) 	LOC_Os04g49620.1	"DUF581 domain containing protein, expressed"	Medtr8g008600.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16235.1.A1_at	A	A1TS	POPTR_0003s10910	POPTR_0003s10910 (11)	scaffold_3:11771905-11772355(+) (11)	POPTR_0001s00590 (8)	O64769	Potassium transporter 11	AT2G35060.1	K+ uptake permease 11 	LOC_Os04g52390.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.162362.2.S1_a_at	A	A5TS	POPTR_0010s14820	POPTR_0396s00200 (11)//POPTR_0010s14820 (11)//POPTR_0396s00210 (11)//POPTR_0396s00220 (10)//POPTR_0010s14830 (9)	scaffold_10:14291729-14292093(+) (11)//scaffold_10:14296454-14296818(+) (9)//scaffold_396:251-615(+) (11)//scaffold_396:6172-6536(+) (11)//scaffold_396:9777-10141(+) (11)	NA	P52839	Flavonol sulfotransferase-like	AT3G45070.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g04320.1	"sulfotransferase domain containing protein, expressed"	Medtr3g061400.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.162362.2.S1_at	A	A1MS	POPTR_0396s00220	POPTR_0396s00220 (10)	scaffold_396:537-6636(+) (11)//scaffold_396:6458-10241(+) (11)	NA	P52839	Flavonol sulfotransferase-like	AT3G45070.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g061400.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.162367.1.S1_at	A	A1TS	POPTR_0008s07820	POPTR_0008s07820 (10)	scaffold_8:4817996-4818232(+) (10)	NA	Q55141	Acetolactate synthase small subunit	AT5G16290.2	VALINE-TOLERANT 1 	LOC_Os02g39570.1	"ACT domain containing protein, expressed"	Medtr4g137170.1	"Acetolactate synthase, small subunit "	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.162370.1.S1_at	A	A1TS	POPTR_0008s08640	POPTR_0008s08640 (11)	scaffold_8:5347126-5349944(+) (11)	NA	P42813	Ribonuclease 1	AT2G02990.1	ribonuclease 1 	LOC_Os08g33710.1	"ribonuclease T2 family domain containing protein, expressed"	Medtr5g044290.1	Ribonuclease T2 	NA	GO:0033897|ribonuclease T2 activity||GO:0003723|RNA binding	NA
PtpAffx.162370.2.S1_at	A	A1MS	POPTR_0008s08640	POPTR_0008s08640 (11)	scaffold_8:5347218-5347524(+) (11)	NA	P42813	Ribonuclease 1	AT2G02990.1	ribonuclease 1 	LOC_Os08g33710.1	"ribonuclease T2 family domain containing protein, expressed"	Medtr5g044290.1	Ribonuclease T2 	NA	GO:0033897|ribonuclease T2 activity||GO:0003723|RNA binding	NA
PtpAffx.16240.1.A1_s_at	A	A1TS	POPTR_0001s12560	POPTR_0001s12560 (11)	scaffold_1:9738446-9738847(-) (11)	NA	Q5AYT7	Hsp70 nucleotide exchange factor fes1	AT3G51980.1	ARM repeat superfamily protein 	LOC_Os09g33780.1	expressed protein	Medtr3g110290.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16245.1.S1_at	A	A1TS	POPTR_0010s19420	POPTR_0010s19420 (11)	scaffold_10:17327835-17328041(-) (11)	NA	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
PtpAffx.162483.1.S1_at	A	A1TS	POPTR_0001s22710	POPTR_0001s22710 (11)	scaffold_1:21595909-21597767(+) (11)	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162546.1.A1_at	A	A1TS	POPTR_0003s14430	POPTR_0003s14430 (11)	scaffold_3:14509760-14510239(+) (11)	NA	O22264	Transcription factor MYB12	AT2G47460.1	myb domain protein 12 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162559.1.S1_s_at	A	A2TS	POPTR_0005s18250	POPTR_0007s10890 (11)//POPTR_0005s18250 (11)	scaffold_5:16380585-16381058(+) (11)//scaffold_7:11080997-11081370(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16257.1.S1_at	A	A1TS	POPTR_0001s37040	POPTR_0001s37040 (11)	scaffold_1:35862961-35863490(-) (11)	NA	P30181	DNA topoisomerase 1	AT5G55310.1	DNA topoisomerase 1 beta 	LOC_Os08g05840.1	"DNA topoisomerase 1, putative, expressed"	Medtr3g156670.1	Eukaryotic-like DNA topoisomerase I; ; ; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0003917|DNA topoisomerase type I activity	GO:0005694|chromosome
PtpAffx.162577.1.S1_at	A	A1TS	POPTR_0002s19340	POPTR_0002s19340 (10)	scaffold_2:15299284-15300095(-) (10)	NA	O22899	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G62310.1	RNA helicase family protein 	LOC_Os03g19960.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr1g106350.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.162581.1.S1_at	A	A1TS	POPTR_0004s03230	POPTR_0004s03230 (11)	scaffold_4:2175645-2175679(-) (11)	NA	NA	NA	AT4G05150.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os07g37040.1	"PB1 domain containing protein, expressed"	Medtr4g124660.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162581.1.S1_s_at	A	A1TS	POPTR_0004s03230	POPTR_0004s03230 (11)	scaffold_4:2175090-2175659(-) (11)	NA	NA	NA	AT4G05150.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os07g37040.1	"PB1 domain containing protein, expressed"	Medtr4g124660.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16262.1.A1_at	A	A1TS	POPTR_0002s10430	POPTR_0002s10430 (10)	scaffold_2:7516770-7518187(+) (10)	NA	NA	NA	AT4G24610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). 	LOC_Os02g52280.1	expressed protein	Medtr5g074970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162620.1.A1_at	A	A1TS	POPTR_0004s08160	POPTR_0004s08160 (11)	scaffold_4:6670355-6670643(-) (11)	NA	P36101	Uncharacterized protein YKL027W	AT5G37530.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g14040.1	"ThiF family domain containing protein, putative, expressed"	Medtr5g085660.1	UBA/THIF-type NAD/FAD binding fold 	NA	GO:0003824|catalytic activity	NA
PtpAffx.16263.1.A1_at	A	A1TS	POPTR_0014s07640	POPTR_0014s07640 (10)	scaffold_14:5726126-5726960(+) (10)	NA	O65268	Putative isoaspartyl peptidase/L-asparaginase 4	AT4G00590.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os04g58600.2	"L-asparaginase precursor protein, putative, expressed"	Medtr3g147170.1	"Peptidase T2, asparaginase 2 "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.162632.2.A1_s_at	A	A2TS	POPTR_0018s11370	POPTR_0018s11370 (11)//POPTR_0018s11380 (11)	scaffold_18:12139478-12139643(+) (11)//scaffold_18:12150554-12150719(+) (11)	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.162634.1.A1_at	A	A1TS	POPTR_0012s04080	POPTR_0012s04080 (11)	scaffold_12:3294653-3296438(+) (11)	NA	O35704	Serine palmitoyltransferase 1	AT4G36480.2	long-chain base1 	LOC_Os02g56300.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.16265.1.S1_at	A	A1TS	POPTR_0001s35310	POPTR_0001s35310 (11)	scaffold_1:33646137-33646825(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162664.1.S1_s_at	A	A2TS	POPTR_0014s04890	POPTR_0014s04890 (11)//POPTR_0002s13980 (10)	scaffold_14:3780849-3781931(+) (11)//scaffold_2:10369247-10369720(+) (10)	NA	Q93WY4	Probable WRKY transcription factor 12	AT2G44745.1	WRKY family transcription factor 	LOC_Os04g46060.1	OsWRKY36 - Superfamily of TFs having WRKY and zinc finger domains	AC202489_11.1	DNA-binding WRKY AC202489.10 68133-74292 E EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.162666.1.S1_s_at	A	A1TS	POPTR_0014s09340	POPTR_0014s09340 (11)	scaffold_14:6940615-6943074(+) (11)	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1627.1.S1_a_at	A	A1TS	POPTR_0002s05630	POPTR_0002s05630 (11)	scaffold_2:3700196-3701307(-) (11)	NA	Q84LH8	Transcription factor PIF5	AT2G43010.2	phytochrome interacting factor 4 	LOC_Os12g41650.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g118010.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.16274.1.S1_at	A	A1TS	POPTR_0006s00720	POPTR_0006s00720 (11)	scaffold_6:380291-382024(+) (11)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.162743.1.S1_s_at	A	A1TS	POPTR_0018s10630	POPTR_0018s10630 (11)	scaffold_18:11522963-11523507(+) (11)	NA	O31673	ATP-dependent Clp protease ATP-binding subunit ClpE	AT5G57710.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g15230.1	"heat shock protein-related, putative, expressed"	Medtr8g127930.1	"ATP binding, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162744.1.S1_at	A	A2TS	POPTR_0019s03680	POPTR_0019s03680 (11)//POPTR_0013s04500 (9)	scaffold_13:3090726-3091898(-) (9)//scaffold_19:3760997-3762135(-) (11)	NA	Q9M841	Peroxisome assembly protein 12	AT3G04460.1	peroxin-12 	LOC_Os10g32960.1	"peroxisome assembly protein 12, putative, expressed"	Medtr1g146710.1	"Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
PtpAffx.162745.1.S1_at	A	A1TS	POPTR_0001s14280	POPTR_0001s14280 (11)	scaffold_1:11231582-11232386(+) (11)	POPTR_0001s14290 (6)	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os02g57260.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162751.1.S1_s_at	A	A1TS	POPTR_0016s11610	POPTR_0016s11610 (9)	scaffold_16:10840996-10841816(+) (9)	NA	P46275	"Fructose-1,6-bisphosphatase, chloroplastic"	AT3G54050.2	high cyclic electron flow 1 	LOC_Os03g16050.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.162759.1.S1_s_at	A	A1TS	POPTR_0001s45410	POPTR_0001s45410 (9)	scaffold_1:45897602-45897750(-) (9)	NA	Q9NQZ5	"StAR-related lipid transfer protein 7, mitochondrial"	AT1G64720.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g02910.1	"membrane related protein CP5, putative, expressed"	Medtr3g122780.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162761.1.S1_at	A	A3TS	POPTR_0010s06010	POPTR_0010s06010 (11)//POPTR_0010s06050 (9)//POPTR_0010s06060 (9)	scaffold_10:7448600-7449346(+) (11)//scaffold_10:7478136-7478886(+) (9)//scaffold_10:7485571-7486321(+) (9)	POPTR_0010s06030 (7)//POPTR_0395s00200 (7)	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162795.1.S1_s_at	A	A1TS	POPTR_0015s05200	POPTR_0015s05200 (11)	scaffold_15:5571990-5572085(+) (11)	NA	NA	NA	AT1G14685.1	basic pentacysteine 2 	LOC_Os10g02620.1	"GAGA-binding protein, putative, expressed"	Medtr4g151960.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1628.1.S1_at	A	A1TS	POPTR_0016s14100	POPTR_0016s14100 (10)	scaffold_16:13341563-13342087(+) (10)	NA	Q7X996	CBL-interacting protein kinase 2	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16280.1.S1_at	A	A1MS	POPTR_0008s05740	POPTR_0008s05740 (11)	scaffold_8:3328503-3328905(+) (11)	NA	Q9C7B1	Telomere repeat-binding protein 3	AT3G12560.1	TRF-like 9 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr5g087440.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162800.1.S1_s_at	A	A1TS	POPTR_0001s38630	POPTR_0001s38630 (11)	scaffold_1:37810072-37813522(+) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT5G59180.1	DNA-directed RNA polymerase II 	LOC_Os05g33240.1	"DNA-directed RNA polymerase II subunit RPB7, putative, expressed"	Medtr4g165790.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003723|RNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.162801.1.S1_at	A	A1TS	POPTR_0007s13210	POPTR_0007s13210 (10)	scaffold_7:13329440-13330271(+) (10)	NA	Q9SW44	DEAD-box ATP-dependent RNA helicase 16	AT4G34910.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g51900.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g099680.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.162801.1.S1_s_at	A	A1TS	POPTR_0007s13210	POPTR_0007s13210 (11)	scaffold_7:13328305-13331612(+) (11)	NA	Q9SW44	DEAD-box ATP-dependent RNA helicase 16	AT4G34910.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g51900.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g099680.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.16281.1.S1_at	A	A1TS	POPTR_0001s10020	POPTR_0001s10020 (11)	scaffold_1:7749324-7749791(-) (11)	NA	P23548	Endoglucanase	AT1G13130.1	Cellulase (glycosyl hydrolase family 5) protein 	LOC_Os04g40510.2	"glycosyl hydrolase family 5 protein, putative, expressed"	Medtr4g124580.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162816.1.S1_at	A	A1TS	POPTR_0010s18120	POPTR_0010s18120 (11)	scaffold_10:16477212-16479045(+) (11)	NA	Q9SAK4	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.16282.1.S1_at	A	A1TS	POPTR_0014s15290	POPTR_0014s15290 (11)	scaffold_14:11365089-11365220(+) (11)	NA	NA	NA	AT5G42570.1	B-cell receptor-associated 31-like 	LOC_Os05g19040.1	"prefoldin, putative, expressed"	Medtr4g064750.1	B-cell receptor-associated 31-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162844.1.S1_at	A	A1TS	POPTR_0008s01000	POPTR_0008s01000 (11)	scaffold_8:470877-471339(-) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT1G17745.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os06g44460.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.162859.1.S1_at	A	A1TS	POPTR_0010s07500	POPTR_0010s07500 (9)	scaffold_10:8542154-8543387(-) (9)	NA	NA	NA	AT1G04555.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33380.1); Has 84 Blast hits to 83 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57170.1	expressed protein	Medtr1g065670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162863.1.S1_at	A	A1TS	POPTR_0011s03140	POPTR_0011s03140 (11)	scaffold_11:3202056-3207686(-) (11)	NA	Q40872	Floral homeotic protein AGAMOUS	AT4G18960.1	K-box region and MADS-box transcription factor family protein  	LOC_Os01g10504.1	"OsMADS3 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g136380.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.16287.1.S1_at	A	A1TA	POPTR_0006s00330	POPTR_0006s00330 (11)	scaffold_6:126340-126672(+) (11)	NA	Q9LIQ7	"Pentatricopeptide repeat-containing protein At3g24000, mitochondrial"	AT3G24000.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g30760.1	"pentatricopeptide, putative"	Medtr1g008670.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162872.1.S1_s_at	A	A1TS	POPTR_0010s09420	POPTR_0010s09420 (11)	scaffold_10:10254280-10255838(-) (11)	NA	Q80YD1	"ATP-dependent RNA helicase SUPV3L1, mitochondrial"	AT4G14790.1	"ATP-dependent RNA helicase, mitochondrial (SUV3) "	LOC_Os03g53500.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g006820.1	"Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.162877.1.S1_at	A	A1TS	POPTR_0007s06490	POPTR_0007s06490 (11)	scaffold_7:4859570-4861367(+) (11)	NA	Q9LV85	Protein CPR-5	AT5G64930.1	"CPR5 protein, putative "	LOC_Os02g53070.1	"HYS1, putative, expressed"	Medtr3g144950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162878.1.S1_at	A	A1TS	POPTR_0002s05280	POPTR_0002s05280 (11)	scaffold_2:3424111-3424960(+) (11)	NA	Q498M4	WD repeat-containing protein 5	AT4G02730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g38430.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086290.1	"WD repeat-containing protein 5, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162879.1.S1_s_at	A	A2TS	POPTR_0008s14720	POPTR_0010s10420 (11)//POPTR_0008s14720 (11)	scaffold_10:10930236-10930271(-) (11)//scaffold_8:9772494-9772529(+) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.16288.1.S1_at	A	A1TS	POPTR_0001s28490	POPTR_0001s28490 (11)	scaffold_1:27250718-27250905(+) (11)	NA	NA	NA	AT5G58600.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18110.1	"proteins of unknown function domain containing protein, putative, expressed"	Medtr5g079650.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16289.1.A1_at	A	A1TS	POPTR_0001s09910	POPTR_0001s09910 (9)	scaffold_1:7649145-7649315(-) (9)	NA	P22503	Endoglucanase	AT4G09740.1	glycosyl hydrolase 9B14 	LOC_Os08g29770.1	"endoglucanase, putative, expressed"	Medtr5g010040.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.162910.1.S1_at	A	A1TS	POPTR_0015s14600	POPTR_0015s14600 (11)	scaffold_15:14137125-14137185(-) (11)	NA	Q50EX6	Protein ODORANT1	AT4G12350.1	myb domain protein 42 	LOC_Os09g36250.1	"MYB family transcription factor, putative, expressed"	Medtr3g087570.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162916.1.S1_at	A	A1TS	POPTR_0009s15230	POPTR_0009s15230 (11)	scaffold_9:11817384-11819913(-) (11)	NA	P0CE10	"Putative uncharacterized protein At4g01020, chloroplastic"	AT5G60250.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os11g01240.1	IBR domain containing protein	Medtr4g080390.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.162917.1.S1_at	A	A1TS	POPTR_0002s14220	POPTR_0002s14220 (11)	scaffold_2:10537554-10539341(-) (11)	NA	Q8RXD6	E3 ubiquitin-protein ligase BRE1-like 1	AT2G44950.1	histone mono-ubiquitination 1 	LOC_Os04g46450.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g040330.1	"Zinc finger, DksA/TraR C4-type; Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162923.1.S1_s_at	A	A1TS	POPTR_0008s07370	POPTR_0008s07370 (11)	scaffold_8:4523081-4523555(-) (11)	NA	Q9SIY8	Laccase-5	AT2G40370.1	laccase 5 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr3g097050.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.162930.2.S1_at	A	A1TS	POPTR_0003s21080	POPTR_0003s21080 (11)	scaffold_3:19376100-19376903(+) (11)	NA	P28752	Tubulin alpha-1 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.162939.1.S1_s_at	A	A1TS	POPTR_0001s05560	POPTR_0001s05560 (11)	scaffold_1:4264732-4265078(-) (11)	NA	NA	NA	AT5G12950.1	Putative glycosyl hydrolase of unknown function (DUF1680) 	LOC_Os02g10190.1	"DUF1680 domain containing protein, putative, expressed"	Medtr4g086870.1	Protein of unknown function DUF1680 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162945.1.S1_at	A	A1TS	POPTR_0001s34310	POPTR_0001s34310 (11)	scaffold_1:32476578-32477947(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162974.1.S1_s_at	A	A1TS	POPTR_0010s04930	POPTR_0010s04930 (11)	scaffold_10:6172928-6173355(+) (11)	NA	NA	NA	AT1G59650.1	Protein of unknown function (DUF1336) 	LOC_Os03g48660.1	"DUF1336 domain containing protein, expressed"	Medtr5g038290.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162976.1.S1_at	A	A2TS	POPTR_0017s02340	POPTR_0017s02340 (11)//POPTR_0004s08110 (10)	scaffold_17:1724765-1725142(-) (11)//scaffold_4:6634745-6635113(-) (10)	NA	Q43644	"NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial"	AT5G37510.1	"NADH-ubiquinone dehydrogenase, mitochondrial, putative "	LOC_Os03g50540.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr3g087270.1	Ferredoxin 	GO:0055114|oxidation reduction	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity"	NA
PtpAffx.162982.1.S1_s_at	A	A1TS	POPTR_0015s04290	POPTR_0015s04290 (11)	scaffold_15:4346697-4347682(-) (11)	NA	P90587	66 kDa stress protein	AT3G18060.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g03510.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g155430.1	"66 kDa stress protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162989.1.S1_at	A	A1TS	POPTR_0009s13580	POPTR_0009s13580 (10)	scaffold_9:10780757-10781316(-) (10)	NA	Q9SBQ8	Kaempferol 3-O-beta-D-galactosyltransferase	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128440.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008152|metabolic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.163.1.S1_at	A	A1TS	POPTR_0015s13380	POPTR_0015s13380 (11)	scaffold_15:13373837-13374003(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G07280.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os01g68870.2	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.163019.1.S1_s_at	A	A1TS	POPTR_0001s35240	POPTR_0001s35240 (11)	scaffold_1:33534765-33535215(-) (11)	NA	NA	NA	AT3G27670.1	ARM repeat superfamily protein 	LOC_Os01g07490.1	"RST1, putative, expressed"	Medtr6g005020.1	"RST1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163022.1.S1_s_at	A	A2TS	POPTR_0003s01470	POPTR_0133s00270 (11)//POPTR_0003s01470 (11)	scaffold_133:124567-125166(+) (11)//scaffold_3:1345383-1345982(-) (11)	NA	Q8DI01	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	AT5G10160.1	Thioesterase superfamily protein 	LOC_Os05g36000.1	"FabA-like domain containing protein, expressed"	Medtr2g008690.1	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163029.1.S1_at	A	A1TS	POPTR_0010s11970	POPTR_0010s11970 (11)	scaffold_10:12093052-12096551(-) (11)	NA	Q9ZSQ4	"Phosphoglucomutase, cytoplasmic"	AT1G70730.3	Phosphoglucomutase/phosphomannomutase family protein 	LOC_Os03g50480.1	"phosphoglucomutase, putative, expressed"	Medtr4g157910.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.163033.1.S1_s_at	A	A2TS	POPTR_0004s03780	POPTR_0011s04610 (11)//POPTR_0004s03780 (11)	scaffold_11:4554689-4554756(-) (11)//scaffold_4:2635399-2635466(-) (11)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163046.1.S1_at	A	A1TS	POPTR_0001s21890	POPTR_0001s21890 (11)	scaffold_1:20381702-20382148(-) (11)	NA	Q9C992	3-ketoacyl-CoA synthase 7	AT1G71160.1	3-ketoacyl-CoA synthase 7 	LOC_Os03g12030.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr2g007100.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.16305.1.S1_at	A	A1TS	POPTR_0001s41200	POPTR_0001s41200 (10)	scaffold_1:40841467-40841982(+) (11)	NA	Q8GUK7	E3 ubiquitin-protein ligase RMA3	AT4G27470.1	RING membrane-anchor 3 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163050.1.S1_s_at	A	A1TS	POPTR_0010s09500	POPTR_0010s09500 (11)	scaffold_10:10300205-10300777(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G02100.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g55050.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g012420.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163051.1.S1_at	A	A1TS	POPTR_0007s12750	POPTR_0007s12750 (11)	scaffold_7:12996940-12997093(+) (11)	NA	O82663	"Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial"	AT5G66760.1	succinate dehydrogenase 1-1 	LOC_Os07g04240.1	"succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed"	Medtr5g019940.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.163051.2.S1_s_at	A	A1TS	POPTR_0005s12530	POPTR_0005s12530 (11)	scaffold_5:9311571-9312221(-) (11)	NA	O82663	"Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial"	AT5G66760.1	succinate dehydrogenase 1-1 	LOC_Os07g04240.1	"succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed"	Medtr5g019940.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.16306.1.S1_at	A	A1TS	POPTR_0012s13580	POPTR_0012s13580 (9)	scaffold_12:13681724-13682025(-) (9)	NA	Q9FXW4	Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.163069.1.S1_at	A	A1TS	POPTR_0001s41240	POPTR_0001s41240 (9)	scaffold_1:40875147-40875627(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16307.1.S1_at	A	A1MA	POPTR_0089s00200	POPTR_0089s00200 (9)	scaffold_6:17594594-17594974(-) (10)//scaffold_89:25450-25810(-) (9)	POPTR_0006s18860 (8)//POPTR_0496s00200 (8)//POPTR_0594s00200 (7)//POPTR_0637s00200 (7)//POPTR_0006s18830 (6)	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.163078.1.S1_s_at	A	A1TS	POPTR_0002s16080	POPTR_0002s16080 (11)	scaffold_2:11977080-11978418(+) (11)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47040.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.16308.1.S1_a_at	A	A1TS	POPTR_0005s21730	POPTR_0005s21730 (11)	scaffold_5:20834971-20835043(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G42440.1	Protein kinase superfamily protein 	LOC_Os11g06780.1	"serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed"	Medtr1g124830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16308.1.S1_at	A	A1TS	POPTR_0005s21730	POPTR_0005s21730 (11)	scaffold_5:20834729-20834956(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G42440.1	Protein kinase superfamily protein 	LOC_Os11g06780.1	"serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed"	Medtr1g124830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163089.1.S1_at	A	A1TS	POPTR_0011s10920	POPTR_0011s10920 (10)	scaffold_11:13485201-13485367(+) (10)	NA	Q54XK2	Protein transport protein Sec61 subunit alpha	AT2G34250.2	SecY protein transport family protein 	LOC_Os03g11440.1	"protein transport protein Sec61 subunit alpha, putative, expressed"	Medtr8g092670.1	SecY protein; ABC transporter related 	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
PtpAffx.163092.1.S1_s_at	A	A2TS	POPTR_0008s12860	POPTR_0008s12870 (11)//POPTR_0008s12860 (11)	scaffold_8:8368675-8369041(-) (11)//scaffold_8:8372938-8373304(-) (11)	NA	Q9M9Q6	Serine carboxypeptidase-like 50	AT1G15000.1	serine carboxypeptidase-like 50 	LOC_Os05g50600.1	"OsSCP31 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr5g104840.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.16310.1.S1_at	A	A1TS	POPTR_0014s03040	POPTR_0014s03040 (10)	scaffold_14:2482190-2482533(+) (10)	NA	NA	NA	NA	NA	LOC_Os09g28510.1	"EF hand family protein, putative, expressed"	Medtr1g024720.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163109.1.S1_s_at	A	A2TS	POPTR_0019s13930	POPTR_0019s13930 (11)//POPTR_1008s00200 (11)	scaffold_1008:216-318(-) (11)//scaffold_19:14773290-14773392(-) (11)	NA	NA	NA	AT4G10270.1	Wound-responsive family protein 	LOC_Os04g54240.1	"wound induced protein, putative, expressed"	Medtr2g095480.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163113.1.S1_s_at	A	A1TS	POPTR_0013s08190	POPTR_0013s08190 (11)	scaffold_13:7202924-7204140(-) (11)	NA	Q9CXR1	Dehydrogenase/reductase SDR family member 7	AT3G03330.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os11g16410.3	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g090010.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163121.1.S1_at	A	A1TS	POPTR_0609s00200	POPTR_0609s00200 (10)	scaffold_609:2392-3134(+) (10)	POPTR_0016s07820 (6)	P26792	"Beta-fructofuranosidase, insoluble isoenzyme 1"	AT3G52600.2	cell wall invertase 2 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr7g127810.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163132.1.S1_at	A	A1TS	POPTR_0005s06660	POPTR_0005s06660 (10)	scaffold_5:4460743-4461715(-) (10)	NA	Q39111	Gibberellin 20 oxidase 2	AT5G51810.1	gibberellin 20 oxidase 2 	LOC_Os01g66100.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr3g143130.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.163145.1.S1_at	A	A1TS	POPTR_0007s05470	POPTR_0007s05470 (9)	scaffold_7:3556829-3558421(-) (9)	NA	A8KBE0	Oxidation resistance protein 1	AT4G39870.2	TLD-domain containing nucleolar protein 	LOC_Os06g11790.1	"TLD family protein, putative, expressed"	Medtr3g101690.2	TLDc 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16316.1.S1_a_at	A	A1TS	POPTR_0001s14790	POPTR_0001s14790 (11)	scaffold_1:11642113-11642479(-) (11)	NA	Q9SAI5	60S ribosomal protein L7-1	AT1G80750.1	Ribosomal protein L30/L7 family protein 	LOC_Os08g42920.1	"60S ribosomal protein L7, putative, expressed"	Medtr7g065310.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.16316.2.S1_at	A	A1TS	POPTR_0001s14790	POPTR_0001s14790 (10)	scaffold_1:11641862-11641989(-) (10)	NA	Q9SAI5	60S ribosomal protein L7-1	AT1G80750.1	Ribosomal protein L30/L7 family protein 	LOC_Os08g42920.1	"60S ribosomal protein L7, putative, expressed"	Medtr7g065310.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.16317.1.S1_at	A	A1TS	POPTR_0068s00200	POPTR_0068s00200 (11)	scaffold_68:8692-8777(-) (11)	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163176.1.S1_at	A	A1TS	POPTR_0011s14190	POPTR_0011s14190 (11)	scaffold_11:16692659-16693093(-) (11)	NA	NA	NA	AT5G54930.1	AT hook motif-containing protein 	NA	NA	Medtr3g068310.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.163198.1.S1_s_at	A	A1TS	POPTR_0016s10710	POPTR_0016s10710 (10)	scaffold_16:9002905-9004839(+) (10)	NA	NA	NA	AT2G36885.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 58 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). 	LOC_Os03g04470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163204.1.S1_s_at	A	A1TS	POPTR_0006s20590	POPTR_0006s20590 (11)	scaffold_6:19611225-19611392(-) (11)	NA	NA	NA	AT1G20970.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os08g40250.1	expressed protein	Medtr1g039770.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16324.1.A1_s_at	A	A1TS	POPTR_0015s01320	POPTR_0015s01320 (11)	scaffold_15:819740-820209(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT5G53080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr3g123620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163243.1.S1_s_at	A	A1TS	POPTR_0003s19330	POPTR_0003s19330 (11)	scaffold_3:18092818-18095300(+) (11)	NA	Q8BTU1	UPF0468 protein C16orf80 homolog	AT3G12300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). 	LOC_Os09g33570.1	"AGAP009680-PA, putative, expressed"	Medtr8g044000.2	Protein of unknown function DUF667 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163265.1.S1_s_at	A	A1TS	POPTR_0010s12030	POPTR_0010s12030 (11)	scaffold_10:12139983-12141818(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163270.1.S1_at	A	A1TS	POPTR_0012s01330	POPTR_0012s01330 (11)	scaffold_12:945030-945526(-) (11)	NA	NA	NA	AT5G53280.1	plastid division1 	LOC_Os02g16450.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163275.1.A1_at	A	A1TS	POPTR_0009s13920	POPTR_0009s13920 (11)	scaffold_9:10996486-10996947(-) (11)	NA	P93768	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G20200.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os09g37000.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.163275.2.S1_a_at	A	A2TS	POPTR_0004s18270	POPTR_0009s13920 (11)//POPTR_0004s18270 (11)	scaffold_4:18222060-18223238(-) (11)//scaffold_9:10998539-10999716(-) (11)	NA	P93768	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G20200.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os09g37000.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.163275.2.S1_at	A	A1TS	POPTR_0009s13920	POPTR_0009s13920 (11)	scaffold_9:10998625-10999915(-) (11)	NA	P93768	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G20200.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os09g37000.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.163276.1.S1_s_at	A	A1TS	POPTR_0006s16660	POPTR_0006s16660 (11)	scaffold_6:14552204-14552674(+) (11)	NA	Q9N5K2	"DNA-directed RNA polymerases I, II, and III subunit RPABC1"	AT3G22320.1	Eukaryotic rpb5 RNA polymerase subunit family protein 	LOC_Os01g59140.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed"	Medtr5g005650.1	"RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.163285.1.S1_at	A	A1TS	POPTR_0017s03550	POPTR_0017s03550 (11)	scaffold_17:2568714-2571775(-) (11)	NA	NA	NA	NA	NA	LOC_Os10g35060.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr6g083840.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.163305.1.S1_at	A	A1TS	POPTR_0018s09390	POPTR_0018s09390 (9)	scaffold_18:10287998-10288428(-) (10)	NA	Q54RA4	Probable iron/ascorbate oxidoreductase DDB_G0283291	AT1G35190.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g09300.3	"oxidoreductase, putative, expressed"	Medtr4g159750.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.163316.1.S1_at	A	A1TS	POPTR_0006s22010	POPTR_0006s22010 (11)	scaffold_6:21031211-21031704(-) (11)	NA	Q9CAF2	"Nudix hydrolase 26, chloroplastic"	AT3G10620.1	nudix hydrolase homolog 26 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.163331.1.S1_s_at	A	A1TS	POPTR_0002s11220	POPTR_0002s11220 (11)	scaffold_2:8284271-8284773(-) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT2G18880.1	vernalization5/VIN3-like 	LOC_Os02g05840.1	"VIL2 protein, putative, expressed"	Medtr5g075380.1	"Protein VERNALIZATION INSENSITIVE 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163372.1.S1_at	A	A1TS	POPTR_0002s24870	POPTR_0002s24870 (11)	scaffold_2:22089469-22091629(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163372.1.S1_s_at	A	A1TS	POPTR_0002s24860	POPTR_0002s24860 (10)	scaffold_2:22089726-22091708(-) (11)//scaffold_2:22091884-22091962(-) (10)	POPTR_0002s24870 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163373.1.S1_at	A	A1TS	POPTR_0008s04480	POPTR_0008s04480 (9)	scaffold_8:2527063-2527276(-) (9)	NA	NA	NA	AT5G13610.1	Protein of unknown function (DUF155) 	LOC_Os07g49410.1	"uncharacterized ACR, YagE family COG1723 containing protein, expressed"	Medtr5g046070.1	Protein of unknown function DUF155 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1634.1.S1_s_at	A	A1TS	POPTR_0005s08190	POPTR_0005s08190 (11)	scaffold_5:5633070-5633552(-) (11)	NA	NA	NA	AT2G22125.1	binding 	LOC_Os11g08090.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1634.3.A1_at	A	A1TS	POPTR_0001s23240	POPTR_0001s23240 (10)	scaffold_1:22513553-22513898(-) (10)	NA	NA	NA	AT2G26920.1	Ubiquitin-associated/translation elongation factor EF1B protein 	LOC_Os05g33850.1	"UBA/TS-N domain containing protein, expressed"	Medtr5g095840.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163405.1.S1_at	A	A2TS	POPTR_0005s15890	POPTR_0005s15890 (11)//POPTR_0005s15870 (10)	scaffold_5:12520390-12530399(-) (11)//scaffold_5:12530581-12530870(-) (10)	NA	P77806	Aminotransferase ybdL	AT1G77670.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os09g28050.1	"asparate aminotransferase, putative, expressed"	Medtr3g097750.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.163405.2.S1_a_at	A	A2TS	POPTR_0002s08650	POPTR_0005s15890 (11)//POPTR_0002s08650 (11)	scaffold_2:6060091-6060275(-) (11)//scaffold_5:12531392-12531576(-) (11)	NA	P77806	Aminotransferase ybdL	AT1G77670.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os09g28050.1	"asparate aminotransferase, putative, expressed"	Medtr3g097750.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.163405.2.S1_at	A	A1TS	POPTR_0005s15890	POPTR_0005s15890 (11)	scaffold_5:12531368-12532637(-) (11)	NA	P77806	Aminotransferase ybdL	AT1G77670.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os09g28050.1	"asparate aminotransferase, putative, expressed"	Medtr3g097750.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.163410.1.S1_s_at	A	A1TS	POPTR_0011s01410	POPTR_0011s01410 (11)	scaffold_11:992465-993894(-) (11)	NA	NA	NA	AT1G62305.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g50040.1	"DNA binding protein, putative, expressed"	Medtr4g143290.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.163413.1.S1_s_at	A	A1TS	POPTR_0013s05500	POPTR_0013s05500 (11)	scaffold_13:3929758-3930751(+) (11)	POPTR_0019s04980 (6)	Q552J0	T-complex protein 1 subunit theta	AT3G03960.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g59020.1	"T-complex protein, putative, expressed"	Medtr6g030660.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.163414.1.S1_at	A	A1TS	POPTR_0017s10560	POPTR_0017s10560 (11)	scaffold_17:9998832-10000163(-) (11)	NA	NA	NA	AT3G27470.2	Protein of unknown function (DUF707) 	LOC_Os02g19510.2	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163417.1.S1_at	A	A1TS	POPTR_0006s26160	POPTR_0006s26160 (11)	scaffold_6:24444631-24445201(+) (11)	NA	NA	NA	AT5G11460.1	Protein of unknown function (DUF581) 	LOC_Os01g08520.1	"DUF581 domain containing protein, expressed"	Medtr3g135880.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163418.1.S1_s_at	A	A1TS	POPTR_0006s09510	POPTR_0006s09510 (11)	scaffold_6:6989649-6990014(-) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os05g37900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163418.2.S1_s_at	A	A1TS	POPTR_0016s09960	POPTR_0016s09960 (11)	scaffold_16:8092397-8092654(+) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g63150.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163425.1.S1_s_at	A	A1TS	POPTR_0010s10430	POPTR_0010s10430 (11)	scaffold_10:10942057-10942677(+) (11)	POPTR_0008s14700 (8)	NA	NA	AT1G70280.2	NHL domain-containing protein 	LOC_Os02g49770.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163431.1.S1_at	A	A2TS	POPTR_0016s10330	POPTR_0016s10330 (11)//POPTR_0016s10310 (9)	scaffold_16:8541124-8541532(-) (10)//scaffold_16:8558137-8558627(-) (11)//scaffold_16:8578015-8578505(-) (9)	POPTR_0016s10350 (8)//POPTR_0016s10340 (7)	P17801	Putative receptor protein kinase ZmPK1	AT1G34300.1	lectin protein kinase family protein 	LOC_Os01g47840.1	"S-locus-like receptor protein kinase, putative, expressed"	Medtr7g064600.1	Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163432.1.S1_s_at	A	A1TS	POPTR_0014s10800	POPTR_0014s10800 (11)	scaffold_14:8081491-8082777(-) (11)	NA	O60155	Putative prolyl-tRNA synthetase C19C7.06	AT3G62120.2	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os12g25710.3	"bifunctional aminoacyl-tRNA synthetase, putative, expressed"	Medtr7g134100.1	"Prolyl-tRNA synthetase, bacterial "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.163434.1.S1_at	A	A1TS	POPTR_0016s02890	POPTR_0016s02890 (10)	scaffold_16:1429361-1429647(-) (10)	NA	NA	NA	AT3G56590.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g71220.1	"zinc finger protein, putative, expressed"	Medtr7g105620.1	"Putative RING zinc finger protein-, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163436.1.S1_s_at	A	A1TS	POPTR_0003s09690	POPTR_0003s09690 (11)	scaffold_3:10958133-10959922(+) (11)	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr5g028110.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.163438.1.S1_at	A	A2TS	POPTR_0012s10780	POPTR_0012s10780 (11)//POPTR_0015s11650 (11)	scaffold_12:11473323-11473629(+) (11)//scaffold_15:12205301-12205607(+) (11)	NA	Q9LSE2	Transcription factor ICE1	AT3G26744.4	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os11g32100.1	"inducer of CBF expression 1, putative, expressed"	Medtr7g096910.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.163444.1.S1_at	A	A1TS	POPTR_0006s28720	POPTR_0006s28720 (11)	scaffold_6:26325719-26326986(-) (11)	NA	Q16629	Serine/arginine-rich splicing factor 7	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.7	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.16345.1.S1_at	A	A1TS	POPTR_0006s15470	POPTR_0006s15470 (10)	scaffold_6:12856835-12859632(+) (10)	NA	A1SYV1	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase	AT4G29540.2	bacterial transferase hexapeptide repeat-containing protein 	LOC_Os01g52400.1	"bacterial transferase hexapeptide domain containing protein, expressed"	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.163452.1.S1_at	A	A1MS	POPTR_0010s19230	POPTR_0010s19230 (10)	scaffold_10:17208362-17208581(+) (10)	NA	P56286	Eukaryotic translation initiation factor 2 subunit alpha	AT2G40290.1	Eukaryotic translation initiation factor 2 subunit 1 	LOC_Os03g18510.1	expressed protein	Medtr3g094730.1	"RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005850|eukaryotic translation initiation factor 2 complex
PtpAffx.163455.1.S1_at	A	A2MS	POPTR_0004s20430	POPTR_0009s15730 (10)//POPTR_0004s20430 (10)	scaffold_4:20003594-20003632(-) (10)//scaffold_9:12101910-12101948(-) (10)	NA	Q39238	Serine/threonine-protein kinase TOUSLED	AT5G20930.1	Protein kinase superfamily protein 	LOC_Os03g53880.1	"serine/threonine-protein kinase TOUSLED, putative, expressed"	Medtr5g094260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163455.1.S1_s_at	A	A1TS	POPTR_0004s20430	POPTR_0004s20430 (11)	scaffold_4:20003223-20004071(-) (11)	NA	Q39238	Serine/threonine-protein kinase TOUSLED	AT5G20930.1	Protein kinase superfamily protein 	LOC_Os03g53880.1	"serine/threonine-protein kinase TOUSLED, putative, expressed"	Medtr5g094260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163456.1.S1_at	A	A1TS	POPTR_0002s24550	POPTR_0002s24550 (10)	scaffold_2:21904624-21906832(-) (10)	NA	Q6NLW5	Protein XRI1	AT5G48720.2	x-ray induced transcript 1 	LOC_Os01g68930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163460.1.S1_s_at	A	A1MS	POPTR_0003s21210	POPTR_0003s21210 (11)	scaffold_3:19454197-19454534(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59100.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity"	NA
PtpAffx.163461.1.S1_at	A	A1TS	POPTR_0015s14350	POPTR_0015s14350 (9)	scaffold_15:13988144-13989669(+) (9)	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163462.1.S1_at	A	A1TS	POPTR_0017s04660	POPTR_0017s04660 (10)	scaffold_17:3558845-3559706(-) (10)	POPTR_0007s01200 (6)	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163466.1.S1_at	A	A1MS	POPTR_0017s01040	POPTR_0017s01040 (10)	scaffold_17:763617-763936(+) (10)	NA	Q84K34	E3 ubiquitin-protein ligase SINA-like 10	AT5G37930.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os01g03290.1	seven in absentia protein family domain containing protein	AC235662_15.1	TRAF-like AC235662.1 70113-67206 E EGN_Mt090430 200	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.163467.1.S1_s_at	A	A1TS	POPTR_0001s46430	POPTR_0001s46430 (11)	scaffold_1:46819533-46820900(-) (11)	NA	Q8H0W2	Histone deacetylase 9	AT3G44680.1	histone deacetylase 9 	LOC_Os04g33480.1	"histone deacetylase, putative, expressed"	Medtr4g073130.1	Histone deacetylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163470.1.S1_s_at	A	A1TS	POPTR_0005s24880	POPTR_0005s24880 (11)	scaffold_5:23301570-23303322(+) (11)	NA	Q06190	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha	AT5G44090.1	Calcium-binding EF-hand family protein 	LOC_Os10g33680.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed"	Medtr1g093540.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163478.1.S1_at	A	A1TS	POPTR_0010s10490	POPTR_0010s10490 (11)	scaffold_10:10986730-10987651(+) (11)	NA	Q4R380	DNA polymerase lambda	AT1G10520.1	DNA polymerase lambda (POLL) 	LOC_Os06g13020.2	"DNA polymerase lambda, putative, expressed"	Medtr5g041030.1	"BRCT; DNA nucleotidylexotransferase (TDT); DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	GO:0005622|intracellular
PtpAffx.163500.1.S1_at	A	A1TS	POPTR_0014s06410	POPTR_0014s06410 (11)	scaffold_14:4867419-4867599(-) (11)	NA	NA	NA	AT2G45320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 45 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g37430.2	expressed protein	Medtr4g069860.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16351.1.S1_at	A	A1TS	POPTR_0003s13910	POPTR_0003s13910 (11)	scaffold_3:14133341-14133813(-) (11)	NA	Q9C7W2	Ethylene-responsive transcription factor ERF061	AT1G64380.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g49700.1	"AP2 domain containing protein, expressed"	Medtr5g009440.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.163511.1.S1_at	A	A1TS	POPTR_0018s09260	POPTR_0018s09260 (11)	scaffold_18:10112646-10112921(+) (11)	NA	NA	NA	AT2G44970.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g48416.2	"lipase-related, putative, expressed"	Medtr8g006030.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163511.1.S1_s_at	A	A1TS	POPTR_0018s09260	POPTR_0018s09260 (11)	scaffold_18:10112907-10114144(+) (11)	NA	NA	NA	AT2G44970.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g48416.2	"lipase-related, putative, expressed"	Medtr8g006030.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163518.1.S1_at	A	A1TS	POPTR_0008s05580	POPTR_0008s05580 (9)	scaffold_8:3241477-3242329(-) (9)	NA	Q9Y673	Dolichyl-phosphate beta-glucosyltransferase	AT2G39630.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g60700.1	"dolichyl-phosphate beta-glycosyltransferase, putative, expressed"	Medtr7g027050.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163537.1.S1_at	A	A1TS	POPTR_0010s17720	POPTR_0010s17720 (9)	scaffold_10:16205220-16206808(+) (9)	NA	NA	NA	AT3G19810.1	Protein of unknown function (DUF177) 	LOC_Os02g58450.1	"uncharacterized ACR, COG1399 family protein, expressed"	Medtr4g135210.1	Protein of unknown function DUF177 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163542.1.S1_s_at	A	A1TS	POPTR_0004s04190	POPTR_0004s04190 (11)	scaffold_4:3009795-3011785(+) (11)	NA	P32375	Allantoinase	AT4G04955.1	allantoinase 	LOC_Os04g58390.1	"allantoinase, putative, expressed"	Medtr2g014750.3	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.163548.1.S1_s_at	A	A2TS	POPTR_0003s02140	POPTR_0003s02320 (11)//POPTR_0003s02140 (11)	scaffold_3:2255329-2255505(+) (11)//scaffold_3:2398925-2399101(+) (11)	POPTR_0001s21200 (7)	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163556.1.S1_s_at	A	A1TS	POPTR_0010s19910	POPTR_0010s19910 (11)	scaffold_10:17674339-17675402(-) (11)	NA	Q93063	Exostosin-2	AT3G55830.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g49150.1	"exostosin, putative, expressed"	Medtr5g089480.1	"EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.163559.1.S1_at	A	A1TS	POPTR_0006s27150	POPTR_0006s27150 (11)	scaffold_6:25146885-25147058(+) (11)	NA	Q15B89	UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (Fragment)	AT4G32272.1	Nucleotide/sugar transporter family protein 	LOC_Os02g40030.1	"transporter family protein, putative, expressed"	Medtr1g014080.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.163561.1.S1_a_at	A	A4TS	POPTR_0006s22710	POPTR_0609s00210 (11)//POPTR_0609s00200 (11)//POPTR_0006s22710 (11)//POPTR_0016s07820 (11)	scaffold_16:5639785-5639847(-) (11)//scaffold_6:21639367-21639429(-) (11)//scaffold_609:1039-1101(+) (11)//scaffold_609:11707-11769(+) (11)	NA	P26792	"Beta-fructofuranosidase, insoluble isoenzyme 1"	AT3G52600.1	cell wall invertase 2 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr7g127810.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163561.1.S1_at	A	A1TS	POPTR_0006s22710	POPTR_0006s22710 (11)	scaffold_6:21639240-21641981(-) (11)	NA	P26792	"Beta-fructofuranosidase, insoluble isoenzyme 1"	AT3G52600.1	cell wall invertase 2 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr7g127810.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163561.1.S1_x_at	A	A1TS	POPTR_0006s22710	POPTR_0006s22710 (11)	scaffold_6:21639240-21641981(-) (11)	NA	P26792	"Beta-fructofuranosidase, insoluble isoenzyme 1"	AT3G52600.1	cell wall invertase 2 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr7g127810.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163562.1.S1_s_at	A	A4TS	POPTR_0019s11810	POPTR_0019s11850 (11)//POPTR_0019s11810 (11)//POPTR_0019s11830 (11)//POPTR_0019s11860 (11)	scaffold_19:13046713-13047401(+) (11)//scaffold_19:13060772-13066991(+) (11)//scaffold_19:13077466-13078156(+) (11)//scaffold_19:13087962-13088643(+) (11)	POPTR_0019s11820 (6)	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.163577.1.S1_at	A	A1TS	POPTR_0006s20980	POPTR_0006s20980 (11)	scaffold_6:20102509-20104937(-) (11)	NA	NA	NA	AT2G41945.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g10440.1	"gb protein, putative, expressed"	Medtr4g069990.1	"gb protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16358.1.S1_s_at	A	A1TS	POPTR_0003s01110	POPTR_0003s01110 (10)	scaffold_3:968258-968355(+) (10)	NA	Q9C958	Serine/threonine-protein kinase SRK2B	AT1G60940.2	SNF1-related protein kinase 2.10 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16362.1.S1_at	A	A1TS	POPTR_0011s06880	POPTR_0011s06880 (11)	scaffold_11:7586611-7587168(+) (11)//scaffold_5:21209551-21216981(-) (9)	POPTR_0005s22230 (8)//POPTR_0005s22240 (6)	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.163629.1.S1_a_at	A	A1TS	POPTR_0010s15120	POPTR_0010s15120 (11)	scaffold_10:14473571-14477166(-) (11)	NA	NA	NA	AT4G16146.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os03g19220.2	expressed protein	Medtr2g038860.1	Lg106-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16363.1.S1_at	A	A1TS	POPTR_0008s19640	POPTR_0008s19640 (10)	scaffold_8:13526390-13526724(-) (10)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT1G27210.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163630.1.S1_at	A	A1TS	POPTR_0005s17290	POPTR_0005s17290 (11)	scaffold_5:14549897-14550905(-) (11)	NA	A2YNT8	Serine/threonine-protein kinase SAPK2	AT1G78290.3	Protein kinase superfamily protein 	LOC_Os07g42940.1	"CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g073720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163634.1.S1_at	A	A1TS	POPTR_0015s06960	POPTR_0015s06960 (11)	scaffold_15:7969524-7969806(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163635.1.S1_at	A	A1TS	POPTR_0016s12540	POPTR_0016s12540 (11)	scaffold_16:11975148-11975958(+) (11)	NA	Q96329	"Acyl-coenzyme A oxidase 4, peroxisomal"	AT3G51840.1	acyl-CoA oxidase 4 	LOC_Os01g06600.1	"glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g081040.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.163635.2.S1_a_at	A	A1TS	POPTR_0006s10270	POPTR_0006s10270 (11)	scaffold_6:7682987-7683764(+) (11)	NA	Q96329	"Acyl-coenzyme A oxidase 4, peroxisomal"	AT3G51840.1	acyl-CoA oxidase 4 	LOC_Os05g07090.1	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.16365.1.A1_at	A	A1TS	POPTR_0007s15050	POPTR_0007s15050 (10)	scaffold_7:14698288-14698546(-) (10)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G32910.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g51980.1	"transferase family domain containing protein, expressed"	Medtr5g097970.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.163665.1.S1_s_at	A	A1TS	POPTR_0012s14410	POPTR_0012s14410 (11)	scaffold_12:14318827-14319293(+) (11)	NA	NA	NA	AT5G62280.1	Protein of unknown function (DUF1442) 	NA	NA	Medtr6g069960.1	Protein of unknown function DUF1442 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163669.1.S1_at	A	A1TS	POPTR_0016s09990	POPTR_0016s09990 (11)	scaffold_16:8125977-8126545(+) (11)	POPTR_0006s09480 (6)	Q93YV9	F-box protein SKIP8	AT3G09250.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os02g54710.1	expressed protein	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.16367.2.S1_at	A	A1TS	POPTR_0002s23470	POPTR_0002s23470 (11)	scaffold_2:20993842-20993996(-) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT3G28040.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os01g72700.1	expressed protein	Medtr7g022110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.163673.1.S1_at	A	A1TS	POPTR_0015s10610	POPTR_0015s10610 (11)	scaffold_15:11476162-11477696(-) (11)	NA	Q14746	Conserved oligomeric Golgi complex subunit 2	AT4G24840.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g63250.1	"brefeldin A-sensitive Golgi protein-like, putative, expressed"	Medtr8g109320.1	"COG complex component, COG2 "	GO:0007030|Golgi organization||GO:0015031|protein transport	NA	GO:0016020|membrane
PtpAffx.16368.1.S1_at	A	A1TS	POPTR_0019s10760	POPTR_0019s10760 (11)	scaffold_19:12272468-12274900(-) (11)	NA	Q7SZN2	RING finger protein 170	AT1G72175.1	RING/U-box protein with domain of unknown function (DUF 1232) 	LOC_Os03g62250.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g013260.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163684.1.S1_at	A	A1TS	POPTR_0003s16470	POPTR_0003s16470 (11)	scaffold_3:16054602-16055493(-) (11)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g33510.2	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g005100.1	"Uncharacterized protein At2g33490, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163684.2.S1_a_at	A	A1TS	POPTR_0003s16470	POPTR_0003s16470 (11)	scaffold_3:16054581-16055218(-) (11)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g33510.2	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g005100.1	"Uncharacterized protein At2g33490, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163698.1.S1_s_at	A	A1TS	POPTR_0005s23300	POPTR_0005s23300 (11)	scaffold_5:22123589-22124021(+) (11)	NA	NA	NA	AT4G02715.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g084110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163699.1.S1_s_at	A	A1TS	POPTR_0007s11750	POPTR_0007s11750 (10)	scaffold_7:12144615-12146216(-) (10)	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23610.1	methyl esterase 3 	LOC_Os05g30760.1	"esterase, putative, expressed"	Medtr5g018350.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163708.1.S1_s_at	A	A1TS	POPTR_0010s14860	POPTR_0010s14860 (11)	scaffold_10:14327410-14329607(+) (11)	NA	Q6CBH3	"Probable hexaprenyl pyrophosphate synthase, mitochondrial"	AT2G34630.2	geranyl diphosphate synthase 1 	LOC_Os06g46450.1	"polyprenyl synthetase, putative, expressed"	Medtr5g019360.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.16371.1.A1_at	A	A1TS	POPTR_0035s00320	POPTR_0035s00320 (11)	scaffold_35:176402-176548(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.1	expressed protein	Medtr8g021790.1	TIR 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.163732.1.S1_s_at	A	A2TS	POPTR_0002s10330	POPTR_0002s10330 (11)//POPTR_0005s17620 (11)	scaffold_2:7420741-7420937(-) (11)//scaffold_5:15201528-15201724(-) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT4G24660.1	homeobox protein 22 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g074550.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163752.1.S1_s_at	A	A1TS	POPTR_0014s13720	POPTR_0014s13720 (11)	scaffold_14:10052431-10052643(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163753.1.A1_at	A	A1TS	POPTR_0004s10350	POPTR_0004s10350 (11)	scaffold_4:8899328-8900205(+) (11)	NA	Q9UI10	Translation initiation factor eIF-2B subunit delta	AT5G38640.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g44310.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.163761.1.S1_at	A	A1TS	POPTR_0018s10990	POPTR_0018s10990 (11)	scaffold_18:11809495-11810923(-) (11)	NA	Q8WV93	Lactation elevated protein 1	AT4G28070.2	AFG1-like ATPase family protein 	LOC_Os08g16480.2	"ATPase, AFG1 family domain containing protein, expressed"	Medtr1g013700.1	AFG1-like ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.163787.1.S1_s_at	A	A1TS	POPTR_0010s04480	POPTR_0010s04480 (11)	scaffold_10:5565282-5566544(-) (11)	NA	A3KPN8	Tetratricopeptide repeat protein 38	AT1G27150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g48380.1	expressed protein	Medtr5g038480.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163796.1.S1_s_at	A	A1TS	POPTR_0019s09260	POPTR_0019s09260 (11)	scaffold_19:10833247-10834863(+) (11)	NA	Q05047	Secologanin synthase	AT5G24910.1	"cytochrome P450, family 714, subfamily A, polypeptide 1 "	LOC_Os12g02640.1	"cytochrome P450 72A1, putative, expressed"	Medtr3g121810.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.163802.1.A1_at	A	A1TS	POPTR_0009s09590	POPTR_0009s09590 (11)	scaffold_9:8450173-8450677(+) (11)	NA	O82333	Probable indole-3-acetic acid-amido synthetase GH3.1	AT2G14960.1	Auxin-responsive GH3 family protein 	LOC_Os07g40290.1	"OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163810.1.S1_at	A	A1TS	POPTR_0014s18590	POPTR_0014s18590 (9)	scaffold_14:15925612-15928786(+) (9)	NA	Q28D01	WD repeat-containing protein 26	AT5G43920.1	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163811.1.S1_at	A	A1MS	POPTR_0010s22830	POPTR_0010s22830 (11)	scaffold_10:19601985-19602023(+) (11)	NA	P32483	Para-aminobenzoate synthase	AT2G28880.1	para-aminobenzoate (PABA) synthase family protein 	LOC_Os06g48620.1	"4-amino-4-deoxychorismate synthase, putative, expressed"	Medtr1g121290.1	Anthranilate synthase component I and chorismate binding protein 	GO:0009058|biosynthetic process	GO:0016833|oxo-acid-lyase activity	NA
PtpAffx.163811.1.S1_s_at	A	A1TS	POPTR_0010s22830	POPTR_0010s22830 (11)	scaffold_10:19601915-19602696(+) (11)	NA	P32483	Para-aminobenzoate synthase	AT2G28880.1	para-aminobenzoate (PABA) synthase family protein 	LOC_Os06g48620.1	"4-amino-4-deoxychorismate synthase, putative, expressed"	Medtr1g121290.1	Anthranilate synthase component I and chorismate binding protein 	GO:0009058|biosynthetic process	GO:0016833|oxo-acid-lyase activity	NA
PtpAffx.163820.1.S1_at	A	A1TS	POPTR_0008s13630	POPTR_0008s13630 (11)	scaffold_8:8977877-8978554(-) (11)	NA	Q8C1Y8	Vacuolar fusion protein CCZ1 homolog	AT1G16020.1	Protein of unknown function (DUF1712) 	LOC_Os08g33076.1	"myrosinase precursor, putative, expressed"	Medtr4g156530.1	"myrosinase precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163828.1.S1_s_at	A	A1TS	POPTR_0001s20610	POPTR_0001s20610 (11)	scaffold_1:18604969-18605433(+) (11)	NA	NA	NA	AT1G72790.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g120690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163838.2.S1_a_at	A	A2TS	POPTR_0008s12480	POPTR_0008s12480 (11)//POPTR_0010s12790 (11)	scaffold_10:12765120-12766088(-) (11)//scaffold_8:8070427-8071407(+) (11)	NA	Q9ZU52	"Probable fructose-bisphosphate aldolase 3, chloroplastic"	AT2G01140.1	Aldolase superfamily protein 	LOC_Os01g02880.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.163839.1.S1_at	A	A1TS	POPTR_0013s02780	POPTR_0013s02780 (11)	scaffold_13:1675090-1675807(+) (11)	NA	O22494	"Glutathione synthetase, chloroplastic"	AT5G27380.1	glutathione synthetase 2 	LOC_Os11g42350.1	"glutathione synthetase, chloroplast precursor, putative, expressed"	Medtr7g139670.1	"Eukaryotic glutathione synthase; Eukaryotic glutathione synthase, ATP-binding; "	GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004363|glutathione synthase activity||GO:0005524|ATP binding	NA
PtpAffx.163841.1.S1_at	A	A1TS	POPTR_0010s13170	POPTR_0010s13170 (11)	scaffold_10:13040248-13040713(-) (11)	NA	Q5XGR8	Beta-lactamase-like protein 2	AT1G25375.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os01g04200.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr1g140580.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163845.1.S1_at	A	A1TS	POPTR_0015s05240	POPTR_0015s05240 (9)	scaffold_15:5604686-5605946(-) (9)	POPTR_0012s03790 (6)	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0004371|glycerone kinase activity	NA
PtpAffx.16386.1.A1_a_at	A	A1TS	POPTR_0005s09760	POPTR_0005s09760 (11)	scaffold_5:6844921-6845043(+) (11)	NA	Q9LSX8	SKP1-like protein 10	AT3G21860.1	SKP1-like 10 	LOC_Os07g43270.1	"SKP1-like protein 1B, putative"	Medtr4g033200.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.16386.1.A1_at	A	A1TS	POPTR_0005s09760	POPTR_0005s09760 (11)	scaffold_5:6844542-6844872(+) (11)	NA	Q9LSX8	SKP1-like protein 10	AT3G21860.1	SKP1-like 10 	LOC_Os07g43270.1	"SKP1-like protein 1B, putative"	Medtr4g033200.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.16388.1.S1_at	A	A1MS	POPTR_0005s10680	POPTR_0005s10680 (9)	scaffold_5:7677878-7678425(-) (9)	NA	Q7XA86	Probable S-acyltransferase At3g51390	AT3G51390.1	DHHC-type zinc finger family protein 	LOC_Os12g29560.1	"DHHC zinc finger domain containing protein, expressed"	Medtr5g023180.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.163890.1.S1_at	A	A1TS	POPTR_0003s15060	POPTR_0003s15060 (9)	scaffold_3:14946400-14946548(+) (9)	NA	Q9LY05	Ethylene-responsive transcription factor ERF106	AT5G07580.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g46240.1	"AP2 domain containing protein, expressed"	Medtr1g112020.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.163926.1.S1_at	A	A1TS	POPTR_0010s22660	POPTR_0010s22660 (11)	scaffold_10:19483682-19484995(+) (11)	NA	NA	NA	AT4G25030.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g43060.1	expressed protein	Medtr1g121550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163938.1.S1_s_at	A	A1TS	POPTR_0004s03410	POPTR_0004s03410 (11)	scaffold_4:2350593-2350670(-) (11)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G05020.1	NAD(P)H dehydrogenase B2 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.163943.1.A1_at	A	A1TS	POPTR_0010s12060	POPTR_0010s12060 (11)	scaffold_10:12151753-12152458(-) (11)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16395.1.S1_a_at	A	A1TS	POPTR_0018s03570	POPTR_0018s03570 (11)	scaffold_18:3092898-3093380(-) (11)	NA	NA	NA	AT5G10695.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g44980.1	conserved hypothetical protein	Medtr3g133270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163955.1.S1_s_at	A	A1TS	POPTR_0002s08170	POPTR_0002s08170 (11)	scaffold_2:5655932-5656998(-) (11)	NA	Q9D0F6	Replication factor C subunit 5	AT1G77470.1	replication factor C subunit 3 	LOC_Os02g53500.2	"RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed"	Medtr3g100750.1	"AAA ATPase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
PtpAffx.163957.1.S1_s_at	A	A1TS	POPTR_0017s05500	POPTR_0017s05500 (11)	scaffold_17:4353498-4354289(+) (11)	NA	Q8LDW8	"Probable hydroxyacylglutathione hydrolase 2, chloroplast"	AT1G06130.2	glyoxalase 2-4 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163963.1.S1_s_at	A	A1TS	POPTR_0001s16790	POPTR_0001s16790 (11)	scaffold_1:13587612-13587740(+) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.163969.1.S1_s_at	A	A1TS	POPTR_0014s14690	POPTR_0014s14690 (11)	scaffold_14:10764948-10766013(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.163978.1.S1_at	A	A1TS	POPTR_0004s10250	POPTR_0004s10250 (11)	scaffold_4:8800649-8801156(+) (11)	NA	O80931	Transcription factor AS1	AT2G37630.1	myb-like HTH transcriptional regulator family protein 	LOC_Os12g38400.2	"MYB family transcription factor, putative, expressed"	Medtr7g068530.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163979.1.S1_s_at	A	A1TS	POPTR_0008s15880	POPTR_0008s15880 (11)	scaffold_8:10600254-10600630(+) (11)	POPTR_0010s09140 (6)	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
PtpAffx.163982.1.S1_at	A	A1TS	POPTR_0001s34830	POPTR_0001s34830 (10)	scaffold_1:33053170-33057630(-) (10)	NA	NA	NA	AT3G28370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink). 	LOC_Os06g13580.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163983.1.S1_at	A	A1TS	POPTR_0014s14220	POPTR_0014s14220 (11)	scaffold_14:10411486-10412211(+) (11)	NA	Q8N5U6	RING finger protein 10	AT3G26730.1	RING/U-box superfamily protein 	LOC_Os02g31150.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g097010.1	"Zinc finger, RING-type; Site-specific recombinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164008.1.S1_at	A	A1TS	POPTR_0012s06430	POPTR_0012s06430 (10)	scaffold_12:6834707-6835019(-) (10)	NA	Q9SZF7	Protein SHORT-ROOT	AT4G37650.1	GRAS family transcription factor 	LOC_Os07g39820.1	"SHR, putative, expressed"	Medtr5g015580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164015.1.S1_at	A	A1TS	POPTR_0007s12190	POPTR_0007s12190 (11)	scaffold_7:12531718-12533039(+) (11)	NA	Q8W4F0	Protein DA1-related 1	AT4G36860.1	LIM domain-containing protein 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.16402.2.S1_a_at	A	A1TS	POPTR_0004s09280	POPTR_0004s09280 (11)	scaffold_4:7828621-7829046(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39080.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr7g073510.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.164020.1.S1_at	A	A1TS	POPTR_0006s06920	POPTR_0006s06920 (11)	scaffold_6:5003580-5004251(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g33290.1	"uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed"	Medtr8g120260.1	"Uncharacterized conserved membrane protein specific to cyanobacteria, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164036.1.S1_at	A	A1TS	POPTR_0016s11950	POPTR_0016s11950 (9)	scaffold_16:11127115-11127616(+) (9)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr4g012530.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.164036.2.S1_at	A	A1TS	POPTR_0006s09830	POPTR_0006s09830 (10)	scaffold_6:7231001-7231534(+) (10)//scaffold_958:237-7814(+) (9)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr4g012530.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.164039.1.S1_at	A	A1TS	POPTR_0009s08010	POPTR_0009s08010 (9)	scaffold_9:7426531-7427388(-) (9)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G58490.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g60380.1	"cinnamoyl CoA reductase, putative, expressed"	Medtr5g080900.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.164052.1.S1_at	A	A1TS	POPTR_0010s16180	POPTR_0010s16180 (9)	scaffold_10:15180781-15181340(+) (9)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G48100.1	Pectin lyase-like superfamily protein 	LOC_Os05g20020.1	"polygalacturonase, putative, expressed"	Medtr2g037040.1	"Aminoacyl-tRNA synthetase, class I "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.164055.1.S1_at	A	A1TS	POPTR_0005s10260	POPTR_0005s10260 (11)	scaffold_5:7342821-7343186(-) (11)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.164055.2.S1_s_at	A	A1TS	POPTR_0007s08590	POPTR_0007s08590 (11)	scaffold_7:7444611-7445031(-) (11)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.164065.1.S1_s_at	A	A1TS	POPTR_0008s20230	POPTR_0008s20230 (11)	scaffold_8:14008240-14010858(-) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G18900.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g41010.1	"oxidoreductase, putative, expressed"	Medtr2g025880.2	Metridin-like ShK toxin; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.164072.1.S1_at	A	A1TS	POPTR_0004s23170	POPTR_0004s23170 (11)	scaffold_4:21954794-21955150(+) (11)	NA	Q94CC0	Uncharacterized protein At5g49945	AT4G24330.1	Protein of unknown function (DUF1682) 	LOC_Os05g35710.2	"coiled-coil domain-containing protein 47 precursor, putative, expressed"	Medtr2g005700.1	Protein of unknown function DUF1682 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164076.1.S1_at	A	A1TS	POPTR_0002s24110	POPTR_0002s24110 (11)	scaffold_2:21551226-21552834(+) (11)	NA	Q9R0X4	"Acyl-coenzyme A thioesterase 9, mitochondrial"	AT5G48370.2	Thioesterase/thiol ester dehydrase-isomerase superfamily protein 	LOC_Os09g34190.1	"acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed"	Medtr7g092460.1	"Acyl-coenzyme A thioesterase 9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164082.1.S1_at	A	A1TS	POPTR_0003s15660	POPTR_0003s15660 (11)	scaffold_3:15419448-15421552(-) (11)	NA	Q8DHG3	Tryptophanyl-tRNA synthetase	AT2G25840.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g54020.1	"tRNA synthetase, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.16409.1.A1_at	A	A1TS	POPTR_0001s24150	POPTR_0001s24150 (10)	scaffold_1:23515646-23516092(-) (10)	NA	Q55DM5	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	AT5G59740.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os05g02490.1	"transporter family protein, putative, expressed"	Medtr2g114330.1	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164104.1.S1_s_at	A	A1TS	POPTR_0010s18030	POPTR_0010s18030 (11)	scaffold_10:16424165-16426152(-) (11)	NA	Q9SA32	Putative cyclin-B3-1	AT1G16330.1	cyclin b3;1 	LOC_Os01g59120.1	"cyclin, putative, expressed"	Medtr7g106110.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.16419.1.S1_at	A	A1TS	POPTR_0006s15100	POPTR_0006s15100 (9)	scaffold_6:12561184-12561568(+) (9)	NA	Q9ZUP2	"DNA repair protein recA homolog 3, mitochondrial"	AT2G19490.1	recA DNA recombination family protein 	LOC_Os01g67510.1	"recA protein, putative, expressed"	Medtr2g046210.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16420.1.A1_at	A	A1MS	POPTR_0014s02250	POPTR_0014s02250 (10)	scaffold_14:1909544-1909948(+) (10)	NA	Q6BT38	Chromatin modification-related protein EAF3	AT4G37280.1	MRG family protein 	LOC_Os11g34300.2	"chromatin modification-related protein EAF3, putative, expressed"	NA	NA	NA	NA	GO:0005634|nucleus
PtpAffx.16423.1.S1_at	A	A1TS	POPTR_0012s03180	POPTR_0012s03180 (11)	scaffold_12:2521706-2522231(-) (11)	NA	Q2EF88	Metal-nicotianamine transporter YSL3	AT5G53550.2	YELLOW STRIPE like 3 	LOC_Os04g45860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g123340.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16429.1.S1_at	A	A1TS	POPTR_0015s07840	POPTR_0015s07840 (10)	scaffold_15:9132562-9133090(+) (10)	NA	Q9SSG3	HIPL1 protein	AT1G74790.1	catalytics 	LOC_Os03g48540.1	expressed protein	AC233677_10.1	"Soluble quinoprotein glucose dehydrogenase; TolB, C-terminal AC233677.2 54718-59391 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16431.1.S1_at	A	A1TS	POPTR_0001s36310	POPTR_0001s36310 (11)	scaffold_1:34858568-34858769(+) (11)	NA	NA	NA	AT5G14290.1	Mitochondrial ribosomal protein L37 	LOC_Os12g14080.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16432.1.S1_a_at	A	A1TS	POPTR_0003s17260	POPTR_0003s17260 (11)	scaffold_3:16672559-16674008(-) (11)	NA	Q5ZKY4	Inhibitor of growth protein 4	AT3G24010.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os03g04980.1	"PHD-finger domain containing protein, putative, expressed"	Medtr7g100390.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16432.1.S1_at	A	A1TS	POPTR_0003s17260	POPTR_0003s17260 (11)	scaffold_3:16671254-16672511(-) (11)	NA	Q5ZKY4	Inhibitor of growth protein 4	AT3G24010.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os03g04980.1	"PHD-finger domain containing protein, putative, expressed"	Medtr7g100390.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16433.1.S1_at	A	A1TA	POPTR_0009s06570	POPTR_0009s06570 (11)	scaffold_9:6323657-6323892(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16440.1.A1_s_at	A	A1TS	POPTR_0018s01880	POPTR_0018s01880 (11)	scaffold_18:1696721-1697160(-) (11)	POPTR_0006s27210 (6)	NA	NA	AT4G32160.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr3g137530.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.16450.1.S1_a_at	A	A1TS	POPTR_0006s10280	POPTR_0006s10280 (9)	scaffold_6:7687913-7688208(+) (9)	NA	NA	NA	AT5G01350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g42910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16450.2.S1_at	A	A1MS	POPTR_0016s12630	POPTR_0016s12630 (9)	scaffold_16:12019321-12019437(-) (9)	NA	NA	NA	AT5G01350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g42910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16450.4.S1_at	A	A1TS	POPTR_0016s12630	POPTR_0016s12630 (11)	scaffold_16:12018770-12019001(-) (11)	NA	NA	NA	AT5G01350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g42910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16457.1.S1_a_at	A	A2TS	POPTR_0001s14740	POPTR_0001s14740 (11)//POPTR_0003s17870 (11)	scaffold_1:11614259-11615403(+) (11)//scaffold_3:17122440-17123678(+) (11)	NA	Q92564	DCN1-like protein 4	AT1G15860.2	Domain of unknown function (DUF298) 	LOC_Os08g34070.1	"DCN1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16469.1.A1_at	A	A1TS	POPTR_0002s12590	POPTR_0002s12590 (10)	scaffold_2:9385837-9386434(+) (10)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT5G42940.1	RING/U-box superfamily protein 	LOC_Os04g55510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g024190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16474.1.S1_at	A	A1TS	POPTR_0004s00660	POPTR_0004s00660 (11)	scaffold_4:265266-265562(+) (11)	NA	B6IRQ7	50S ribosomal protein L4	AT2G20060.1	Ribosomal protein L4/L1 family 	LOC_Os11g37510.1	"ribosomal protein L4, putative, expressed"	Medtr3g136260.1	Ribosomal protein L4/L1e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.16497.1.A1_at	A	A1TS	POPTR_0009s03990	POPTR_0009s03990 (11)	scaffold_9:4565869-4566256(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT3G46640.2	Homeodomain-like superfamily protein 	LOC_Os01g74020.1	"MYB family transcription factor, putative, expressed"	Medtr4g084700.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.165.1.S1_at	A	A1TS	POPTR_0006s24870	POPTR_0006s24870 (11)	scaffold_6:23386263-23386808(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os09g30414.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16516.1.S1_a_at	A	A1TS	POPTR_0006s07730	POPTR_0006s07730 (11)	scaffold_6:5636026-5637483(+) (11)	NA	NA	NA	AT5G35330.3	methyl-CPG-binding domain protein 02 	LOC_Os09g32090.1	"methyl-binding domain protein MBD, putative, expressed"	Medtr1g111540.1	"Thymidine kinase; Methyl-CpG binding; Zinc finger, CW-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.16517.1.S1_at	A	A1TS	POPTR_0004s07460	POPTR_0004s07460 (10)	scaffold_4:6138446-6139078(-) (11)//scaffold_4:6155568-6156201(-) (11)	POPTR_0004s07440 (8)	Q51732	Intracellular protease 1	AT3G02720.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os04g57590.1	"DJ-1 family protein, putative, expressed"	Medtr3g086340.2	"Peptidase C56, PfpI "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16539.1.A1_s_at	A	A1TS	POPTR_0001s40180	POPTR_0001s40180 (11)	scaffold_1:39518346-39518527(-) (11)	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78860.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23720.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.16547.1.A1_a_at	A	A1TS	POPTR_0013s13150	POPTR_0013s13150 (11)	scaffold_13:13717094-13720218(-) (11)	NA	O81155	"Cysteine synthase, chloroplastic/chromoplastic"	AT2G43750.2	O-acetylserine (thiol) lyase B 	LOC_Os01g74650.3	"cysteine synthase, mitochondrial precursor, putative, expressed"	Medtr4g128330.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.16548.2.A1_a_at	A	A1TS	POPTR_0011s10450	POPTR_0011s10450 (11)	scaffold_11:12888002-12888108(-) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT1G78560.1	Sodium Bile acid symporter family 	LOC_Os04g31210.4	"bile acid sodium symporter family protein, putative, expressed"	Medtr8g118790.2	Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.16549.1.S1_s_at	A	A2TS	POPTR_0001s37160	POPTR_0001s37160 (11)//POPTR_0001s37170 (11)	scaffold_1:36021262-36021297(-) (11)//scaffold_1:36057599-36057634(-) (11)	NA	Q9SZ11	Probable glycerophosphoryl diester phosphodiesterase 2	AT4G26690.1	PLC-like phosphodiesterase family protein 	LOC_Os04g39610.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr5g101680.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.16559.1.A1_at	A	A1TS	POPTR_0009s06580	POPTR_0009s06580 (10)	scaffold_9:6336064-6336248(+) (10)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.3	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.16575.1.S1_at	A	A1TS	POPTR_0001s16830	POPTR_0001s16830 (10)	scaffold_1:13654553-13654686(+) (10)	NA	P74007	"Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase"	AT1G54130.1	RELA/SPOT homolog 3 	LOC_Os09g27050.1	"HD domain containing protein, putative, expressed"	Medtr8g025050.1	"Metal-dependent phosphohydrolase, HD subdomain "	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.16577.1.A1_at	A	A1TS	POPTR_0019s11170	POPTR_0019s11170 (10)	scaffold_19:12564282-12564417(+) (10)	NA	Q9C8W3	"Alpha-(1,4)-fucosyltransferase"	AT1G71990.1	fucosyltransferase 13 	LOC_Os12g07290.1	"alpha-1,4-fucosyltransferase, putative, expressed"	Medtr4g129820.1	"Glycosyl transferase, family 10 "	GO:0006486|protein amino acid glycosylation	GO:0008417|fucosyltransferase activity	GO:0016020|membrane
PtpAffx.16590.1.A1_at	A	A1TS	POPTR_0005s08280	POPTR_0005s08280 (11)	scaffold_5:5699920-5700903(+) (11)	NA	P34914	Epoxide hydrolase 2	AT4G02340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g19150.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138830.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16622.1.A1_at	A	A1TS	POPTR_0004s01720	POPTR_0004s01720 (9)	scaffold_4:1041031-1041571(-) (9)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.16625.1.A1_at	A	A1TS	POPTR_0006s24420	POPTR_0006s24420 (11)	scaffold_6:23040009-23040262(+) (11)	NA	O80983	"ATP-dependent zinc metalloprotease FTSH 4, mitochondrial"	AT2G26140.1	FTSH protease 4 	LOC_Os01g39260.1	"OsFtsH5  FtsH protease, homologue of AtFtsH4, expressed"	Medtr3g139920.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.16626.1.A1_at	A	A1TS	POPTR_0001s40420	POPTR_0001s40420 (11)	scaffold_1:39847694-39847973(+) (11)	NA	Q9LRR7	"9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic"	AT3G14440.1	nine-cis-epoxycarotenoid dioxygenase 3 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1665.1.S1_at	A	A1TS	POPTR_0012s06250	POPTR_0012s06250 (11)	scaffold_12:6389378-6389777(-) (11)	NA	P50287	Isoaspartyl peptidase/L-asparaginase 1	AT5G08100.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os03g40070.1	"transposon protein, putative, unclassified, expressed"	Medtr1g023790.1	"Peptidase T2, asparaginase 2 "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.16652.1.S1_at	A	A1TS	POPTR_0010s07610	POPTR_0010s07610 (11)	scaffold_10:8630228-8630756(-) (11)	NA	Q9ZUU4	"Ribonucleoprotein At2g37220, chloroplastic"	AT1G60000.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g57010.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g065570.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.16653.1.A1_at	A	A1TS	POPTR_0014s12080	POPTR_0014s12080 (11)	scaffold_14:8931282-8931652(-) (11)	NA	NA	NA	AT5G64260.1	EXORDIUM like 2 	LOC_Os02g52010.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g144900.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16691.2.S1_a_at	A	A1TS	POPTR_0012s13790	POPTR_0012s13790 (11)	scaffold_12:13792619-13792831(+) (11)	NA	Q1PSI9	L-idonate 5-dehydrogenase	AT5G51970.2	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os08g43190.2	"dehydrogenase, putative, expressed"	AC229727_23.1	"Alcohol dehydrogenase superfamily, zinc-containing; AC229727.6 129240-119234 E EGN_Mt090430 200"	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.1670.1.S1_a_at	A	A2TS	POPTR_0001s17070	POPTR_0003s06200 (11)//POPTR_0001s17070 (11)	scaffold_1:13915953-13916723(-) (11)//scaffold_3:7648608-7649008(+) (11)	NA	NA	NA	AT3G13990.2	Kinase-related protein of unknown function (DUF1296) 	LOC_Os06g10430.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g077880.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1670.1.S1_at	A	A1TS	POPTR_0003s06200	POPTR_0003s06200 (11)	scaffold_3:7648880-7649195(+) (11)	NA	NA	NA	AT3G13990.2	Kinase-related protein of unknown function (DUF1296) 	LOC_Os06g10430.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g077880.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1670.2.A1_at	A	A1TS	POPTR_0001s17070	POPTR_0001s17070 (11)	scaffold_1:13915750-13916705(-) (11)	NA	NA	NA	AT3G13990.2	Kinase-related protein of unknown function (DUF1296) 	LOC_Os06g10430.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g077880.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1672.3.A1_a_at	A	A1TS	POPTR_0006s12870	POPTR_0006s12870 (11)	scaffold_6:10031525-10031741(-) (11)	NA	P45730	Phenylalanine ammonia-lyase	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os04g43800.1	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
PtpAffx.16744.2.A1_at	A	A1TS	POPTR_0018s09390	POPTR_0018s09390 (10)	scaffold_18:10284562-10286941(-) (10)	NA	Q54RA4	Probable iron/ascorbate oxidoreductase DDB_G0283291	AT1G35190.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g09300.3	"oxidoreductase, putative, expressed"	Medtr4g159750.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.16749.1.S1_s_at	A	A1TS	POPTR_0003s21330	POPTR_0003s21330 (11)	scaffold_3:19545352-19545776(+) (11)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.1677.1.S1_s_at	A	A2TS	POPTR_0005s00200	POPTR_0005s00240 (11)//POPTR_0005s00200 (11)	scaffold_5:3472-4764(-) (11)//scaffold_5:24033-25339(-) (11)	NA	Q8L7S8	"DEAD-box ATP-dependent RNA helicase 3, chloroplastic"	AT5G26742.2	DEAD box RNA helicase (RH3) 	LOC_Os03g61220.2	"DEAD-box ATP-dependent RNA helicase 3, putative, expressed"	Medtr7g134530.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.16801.1.S1_at	A	A1TS	POPTR_0004s23690	POPTR_0004s23690 (11)	scaffold_4:22325514-22326669(+) (11)	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.16801.1.S1_s_at	A	A2TS	POPTR_0003s00930	POPTR_0004s23690 (11)//POPTR_0003s00930 (11)	scaffold_3:743940-745302(-) (11)//scaffold_4:22325394-22326750(+) (11)	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.16801.2.S1_s_at	A	A1TS	POPTR_0003s00930	POPTR_0003s00930 (11)	scaffold_3:740239-741155(-) (11)	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.1682.1.S1_at	A	A1TS	POPTR_0010s11820	POPTR_0010s11820 (11)	scaffold_10:11967963-11968759(+) (11)	NA	NA	NA	AT1G70670.1	Caleosin-related family protein 	LOC_Os06g14370.2	"caleosin related protein, putative, expressed"	AC233676_20.1	Caleosin related AC233676.2 83014-79445 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16868.1.S1_at	A	A1TS	POPTR_0012s07150	POPTR_0012s07150 (11)	scaffold_12:7917353-7917994(-) (11)	NA	Q9STT5	ABC transporter A family member 7	AT3G47780.1	ABC2 homolog 6 	LOC_Os08g30770.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g112400.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.1688.1.S1_at	A	A1TS	POPTR_0002s23780	POPTR_0002s23780 (11)	scaffold_2:21274137-21274603(-) (11)	NA	NA	NA	AT3G26780.1	Phosphoglycerate mutase family protein 	LOC_Os11g31880.1	"phosphoglycerate mutase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16882.1.A1_at	A	A1TS	POPTR_0003s05560	POPTR_0003s05560 (9)	scaffold_3:6908004-6911890(+) (9)	NA	P13088	Auxin-induced protein AUX22	AT3G15540.1	indole-3-acetic acid inducible 19 	LOC_Os03g43400.1	"OsIAA11 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117720.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.16882.2.S1_at	A	A1TS	POPTR_0001s17780	POPTR_0001s17780 (10)	scaffold_1:14628742-14631370(-) (10)	NA	P13088	Auxin-induced protein AUX22	AT3G15540.1	indole-3-acetic acid inducible 19 	LOC_Os03g43400.1	"OsIAA11 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117720.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.16889.1.S1_at	A	A1TS	POPTR_0004s18150	POPTR_0004s18150 (11)	scaffold_4:18145584-18146092(+) (11)	NA	NA	NA	AT4G35070.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os04g33030.1	"protein binding protein, putative, expressed"	Medtr3g163480.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16899.1.S1_at	A	A1TS	POPTR_0006s00550	POPTR_0006s00550 (11)	scaffold_6:283590-284078(-) (11)	NA	NA	NA	AT1G60870.1	maternal effect embryo arrest 9 	NA	NA	Medtr2g007240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16899.1.S1_x_at	A	A1TS	POPTR_0006s00550	POPTR_0006s00550 (11)	scaffold_6:283605-284135(-) (11)	NA	NA	NA	AT1G60870.1	maternal effect embryo arrest 9 	NA	NA	Medtr2g007240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16899.2.A1_at	A	A1TS	POPTR_0016s00590	POPTR_0016s00590 (11)	scaffold_16:203854-204340(-) (11)	NA	NA	NA	AT1G60870.1	maternal effect embryo arrest 9 	NA	NA	Medtr2g007240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16901.1.S1_at	A	A1TS	POPTR_0006s05550	POPTR_0006s05550 (10)	scaffold_6:3919703-3920655(-) (10)	NA	NA	NA	AT2G42320.2	nucleolar protein gar2-related 	LOC_Os08g39490.3	expressed protein	Medtr7g111110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1691.1.A1_a_at	A	A1TS	POPTR_0010s15010	POPTR_0010s15010 (11)	scaffold_10:14420028-14420459(-) (11)	POPTR_0008s10840 (7)	NA	NA	AT1G69080.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os12g31710.1	"universal stress protein domain containing protein, putative, expressed"	Medtr5g049170.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.16916.1.S1_at	A	A1MS	POPTR_0015s10450	POPTR_0015s10450 (11)	scaffold_15:11384123-11384325(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1693.1.S1_at	A	A1TA	POPTR_0010s10570	POPTR_0010s10570 (11)	scaffold_10:11073282-11073725(-) (11)	NA	NA	NA	AT1G70230.1	TRICHOME BIREFRINGENCE-LIKE 27 	LOC_Os06g12870.1	"leaf senescence related protein, putative, expressed"	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16931.2.S1_a_at	A	A1TS	POPTR_0009s03860	POPTR_0009s03860 (10)	scaffold_9:4430204-4432380(-) (10)	NA	NA	NA	AT5G59460.1	scarecrow-like transcription factor 11 (SCL11) 	LOC_Os01g05130.1	expressed protein	Medtr2g116990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16936.1.S1_at	A	A1TS	POPTR_0009s04560	POPTR_0009s04560 (11)	scaffold_9:4881356-4882006(-) (11)	NA	Q9MAY3	Proliferating cell nuclear antigen	AT2G29570.1	proliferating cell nuclear antigen 2 	LOC_Os02g56130.1	"PCNA - Putative DNA replicative polymerase clamp, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006275|regulation of DNA replication	GO:0003677|DNA binding||GO:0030337|DNA polymerase processivity factor activity	GO:0043626|PCNA complex
PtpAffx.1696.1.A1_s_at	A	A1TS	POPTR_0006s20150	POPTR_0006s20150 (11)	scaffold_6:19214074-19215491(+) (11)	NA	Q5XJD3	Pre-mRNA 3'-end-processing factor FIP1	AT5G58040.1	homolog of yeast FIP1 [V] 	LOC_Os03g51520.2	"fip1 motif family protein, expressed"	Medtr8g137570.1	Fip1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16960.1.S1_at	A	A1TS	POPTR_0005s22760	POPTR_0005s22760 (11)	scaffold_5:21662717-21663868(-) (11)	POPTR_0002s05760 (6)	Q6PGS5	Transmembrane protein 56-B	AT4G19645.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os05g43540.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.16965.1.A1_at	A	A1TS	POPTR_0008s15120	POPTR_0008s15120 (11)	scaffold_8:10109732-10110677(-) (11)	NA	Q9S7X6	Thermospermine synthase ACAULIS5	AT5G19530.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g14190.1	"spermidine synthase, putative, expressed"	Medtr5g006230.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.16966.1.S1_at	A	A1TS	POPTR_0010s22640	POPTR_0010s22640 (11)	scaffold_10:19471703-19473122(-) (11)	NA	Q6PAM1	Alpha-taxilin	AT5G50840.1	CONTAINS InterPro DOMAIN/s: Taxilin (InterPro:IPR019132); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g17930.2	"alpha-taxilin, putative, expressed"	Medtr1g121580.1	"Alpha-taxilin, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16969.1.S1_at	A	A1TS	POPTR_0012s00400	POPTR_0012s00400 (9)	scaffold_12:129937-130947(-) (9)	NA	NA	NA	AT5G24650.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os04g33220.1	"SAM domain family protein, expressed"	Medtr3g122010.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22; Sterile alpha motif homology "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.16980.2.A1_a_at	A	A2TS	POPTR_0003s16830	POPTR_0003s16830 (11)//POPTR_0003s16860 (11)	scaffold_3:16349782-16350099(+) (11)//scaffold_3:16378331-16378648(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.16982.1.A1_at	A	A1TS	POPTR_0008s15520	POPTR_0008s15520 (10)	scaffold_8:10302880-10303384(-) (10)	NA	Q8GYD9	Probable RNA helicase SDE3	AT1G05460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g06440.2	"RNA helicase SDE3, putative, expressed"	Medtr2g056800.1	"DEAD-like helicase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16983.1.S1_at	A	A1TS	POPTR_0001s37670	POPTR_0001s37670 (11)	scaffold_1:36641702-36641999(-) (11)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.16998.1.A1_a_at	A	A2TS	POPTR_0012s02460	POPTR_0015s01270 (11)//POPTR_0012s02460 (11)	scaffold_12:2024898-2025315(-) (11)//scaffold_15:802077-802501(+) (11)	NA	P70168	Importin subunit beta-1	AT5G53480.1	ARM repeat superfamily protein 	LOC_Os12g38110.1	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.16998.1.A1_at	A	A1TS	POPTR_0015s01270	POPTR_0015s01270 (11)	scaffold_15:802020-802321(+) (11)	NA	P70168	Importin subunit beta-1	AT5G53480.1	ARM repeat superfamily protein 	LOC_Os12g38110.1	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.16998.2.S1_at	A	A1TS	POPTR_0012s02460	POPTR_0012s02460 (10)	scaffold_12:2024675-2025000(-) (10)	NA	P70168	Importin subunit beta-1	AT5G53480.1	ARM repeat superfamily protein 	LOC_Os12g38110.1	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.16999.1.S1_x_at	A	A1TS	POPTR_0005s04590	POPTR_0005s04590 (11)	scaffold_5:3085159-3086691(-) (11)	NA	P14830	Superoxide dismutase [Cu-Zn] 1	AT1G08830.2	copper/zinc superoxide dismutase 1 	LOC_Os03g22810.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr7g140060.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
PtpAffx.17000.1.S1_at	A	A1TS	POPTR_0001s00400	POPTR_0001s00400 (11)	scaffold_1:306577-307088(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT1G12100.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os02g44320.1	"LTPL113 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106130.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1701.1.S1_at	A	A1TS	POPTR_0001s16440	POPTR_0001s16440 (11)	scaffold_1:13235818-13236177(+) (11)	NA	P53569	CCAAT/enhancer-binding protein zeta	AT1G72440.1	CCAAT-binding factor 	LOC_Os09g02810.1	"CCAAT/enhancer-binding protein, putative, expressed"	Medtr8g138880.1	CBF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17014.1.A1_at	A	A1TS	POPTR_0013s12310	POPTR_0013s12310 (11)	scaffold_13:12898700-12899251(+) (11)	NA	P51094	Anthocyanidin 3-O-glucosyltransferase 2	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128410.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008152|metabolic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.17025.1.S1_s_at	A	A1TS	POPTR_0002s19100	POPTR_0002s19100 (11)	scaffold_2:15008535-15008949(-) (11)	NA	Q3EAF9	Probable protein phosphatase 2C 49	AT3G62260.1	Protein phosphatase 2C family protein 	LOC_Os05g04360.1	"protein phosphatase 2C, putative, expressed"	Medtr1g106080.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17025.3.A1_at	A	A1TS	POPTR_0002s19100	POPTR_0002s19100 (11)	scaffold_2:15007082-15007233(-) (11)	NA	Q3EAF9	Probable protein phosphatase 2C 49	AT3G62260.1	Protein phosphatase 2C family protein 	LOC_Os05g04360.1	"protein phosphatase 2C, putative, expressed"	Medtr1g106080.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17025.3.A1_s_at	A	A1TS	POPTR_0002s19100	POPTR_0002s19100 (11)	scaffold_2:15007164-15007377(-) (11)	NA	Q3EAF9	Probable protein phosphatase 2C 49	AT3G62260.1	Protein phosphatase 2C family protein 	LOC_Os05g04360.1	"protein phosphatase 2C, putative, expressed"	Medtr1g106080.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17027.2.S1_s_at	A	A1TS	POPTR_0004s23460	POPTR_0004s23460 (11)	scaffold_4:22186160-22186234(+) (11)	NA	Q8GWR3	KH domain-containing protein At1g09660	AT1G09660.1	RNA-binding KH domain-containing protein 	LOC_Os01g66300.1	"KH domain containing protein, putative, expressed"	Medtr2g005410.2	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17028.1.S1_at	A	A1TS	POPTR_0006s24040	POPTR_0006s24040 (9)	scaffold_6:22729218-22729735(-) (9)	NA	Q96P11	Putative methyltransferase NSUN5	AT5G26180.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g12600.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr3g139570.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1704.1.A1_s_at	A	A1TS	POPTR_0016s13410	POPTR_0016s13410 (10)	scaffold_16:12589414-12589741(-) (10)	NA	O80915	PRA1 family protein B4	AT2G38360.1	prenylated RAB acceptor 1.B4 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1704.2.S1_s_at	A	A1TS	POPTR_0011s05640	POPTR_0011s05640 (11)	scaffold_11:5615057-5615342(-) (11)	NA	Q01197	Protein E6	AT2G33850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in 133 species: Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink). 	NA	NA	Medtr2g017920.1	"Protein E6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1704.4.S1_a_at	A	A1TS	POPTR_0001s09180	POPTR_0001s09180 (11)	scaffold_1:7030310-7030564(+) (11)	NA	P18025	Tubulin beta-1 chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.1704.5.A1_at	A	A1TS	POPTR_0003s12540	POPTR_0003s12540 (11)	scaffold_3:13082174-13082659(-) (11)	NA	P29516	Tubulin beta-8 chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.17048.1.S1_at	A	A1TS	POPTR_0001s13700	POPTR_0001s13700 (11)	scaffold_1:10785505-10786765(+) (11)	NA	Q9FYG2	Calmodulin-binding transcription activator 4	AT1G67310.1	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains 	LOC_Os04g31900.1	"calmodulin-binding transcription activator 4, putative, expressed"	Medtr3g104090.1	IQ calmodulin-binding region; Cell surface receptor IPT/TIG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17053.1.A1_s_at	A	A1TS	POPTR_0003s03040	POPTR_0003s03040 (11)	scaffold_3:3366254-3367267(-) (11)	NA	Q5QMN3	DEAD-box ATP-dependent RNA helicase 20	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os01g10050.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.17054.1.A1_at	A	A1MS	POPTR_0016s05380	POPTR_0016s05380 (11)	scaffold_16:3318256-3318749(-) (11)	NA	NA	NA	AT3G52105.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g07870.1	expressed protein	Medtr8g037160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17071.1.A1_at	A	A1TS	POPTR_0003s14230	POPTR_0003s14230 (9)	scaffold_3:14358798-14359164(+) (9)	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.1	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr3g079520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.17081.1.S1_at	A	A1TS	POPTR_0007s03070	POPTR_0007s03070 (9)	scaffold_7:1767896-1768452(-) (9)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G43840.2	UDP-glycosyltransferase 74 F1 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g137110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17087.1.S1_at	A	A1TS	POPTR_0002s02810	POPTR_0002s02810 (11)	scaffold_2:1713283-1713848(-) (11)	NA	Q9P258	Protein RCC2	AT1G19880.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g56720.1	"RCC2, putative, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17087.1.S1_s_at	A	A2TS	POPTR_0002s02810	POPTR_0005s25730 (11)//POPTR_0002s02810 (11)	scaffold_2:1713632-1714764(-) (10)//scaffold_5:23929220-23930648(+) (11)	NA	Q9P258	Protein RCC2	AT1G19880.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g56720.1	"RCC2, putative, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17087.2.S1_at	A	A1TS	POPTR_0005s25730	POPTR_0005s25730 (11)	scaffold_5:23927017-23927069(+) (11)	NA	Q52KW8	Protein RCC2 homolog	AT1G19880.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g56720.1	"RCC2, putative, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17087.2.S1_s_at	A	A1TS	POPTR_0005s25730	POPTR_0005s25730 (11)	scaffold_5:23927055-23927320(+) (11)	NA	Q52KW8	Protein RCC2 homolog	AT1G19880.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g56720.1	"RCC2, putative, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17092.1.A1_at	A	A2TS	POPTR_0011s07750	POPTR_0011s07750 (9)//POPTR_0267s00200 (9)	scaffold_11:8572205-8572582(+) (10)//scaffold_267:15530-15762(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17093.1.S1_at	A	A1TS	POPTR_0004s23300	POPTR_0004s23300 (11)	scaffold_4:22079315-22079713(-) (11)	NA	Q9L5W4	50S ribosomal protein L7/L12	AT4G37660.1	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 	LOC_Os02g10540.1	"ribosomal protein L7/L12 C-terminal domain containing protein, expressed"	Medtr8g092690.1	"Ribosomal protein L7/12, oligomerisation; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.17099.1.A1_at	A	A1TS	POPTR_0010s16490	POPTR_0010s16490 (11)	scaffold_10:15432480-15433157(-) (11)	NA	Q86IX1	Serine/threonine-protein kinase dst1	AT1G69220.1	Protein kinase superfamily protein 	LOC_Os03g54780.1	"STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.17106.1.S1_s_at	A	A1TS	POPTR_0005s07440	POPTR_0005s07440 (11)	scaffold_5:5082660-5087092(+) (11)	NA	O14327	Polyadenylate-binding protein 2	AT5G10350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g120660.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.17112.1.S1_a_at	A	A1TS	POPTR_0005s15290	POPTR_0005s15290 (11)	scaffold_5:12037122-12037410(+) (11)	NA	Q6DEY3	Abhydrolase domain-containing protein FAM108B1	AT5G38220.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g49510.1	"OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17112.2.S1_at	A	A1MS	POPTR_0005s15290	POPTR_0005s15290 (11)	scaffold_5:12038548-12038702(+) (11)	NA	Q6DEY3	Abhydrolase domain-containing protein FAM108B1	AT5G38220.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g49510.1	"OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17166.1.S1_s_at	A	A1TS	POPTR_0009s06900	POPTR_0009s06900 (11)	scaffold_9:6568745-6570339(+) (11)	NA	Q94C11	Splicing factor 4-like protein	AT3G52120.1	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein 	LOC_Os09g10930.2	"gamma response I protein, putative, expressed"	Medtr8g037400.1	SWAP/Surp; D111/G-patch 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.17166.2.A1_at	A	A1TS	POPTR_0001s27670	POPTR_0001s27670 (11)	scaffold_1:26532554-26532975(+) (11)	NA	Q94C11	Splicing factor 4-like protein	AT3G52120.1	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein 	LOC_Os09g10930.2	"gamma response I protein, putative, expressed"	Medtr8g037400.1	SWAP/Surp; D111/G-patch 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.17166.3.S1_s_at	A	A2TS	POPTR_0001s27670	POPTR_0001s27670 (11)//POPTR_0009s06900 (9)	scaffold_1:26528147-26528254(+) (11)//scaffold_9:6565866-6565973(+) (11)	NA	Q94C11	Splicing factor 4-like protein	AT3G52120.1	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein 	LOC_Os09g10930.2	"gamma response I protein, putative, expressed"	Medtr8g037400.1	SWAP/Surp; D111/G-patch 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.17167.1.S1_a_at	A	A1TS	POPTR_0004s22410	POPTR_0004s22410 (11)	scaffold_4:21323611-21324088(-) (11)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.17171.1.A1_at	A	A1TS	POPTR_0001s05590	POPTR_0001s05590 (11)	scaffold_1:4317540-4318084(+) (11)	NA	Q54G07	Protein slowmo homolog	AT5G13070.1	MSF1-like family protein 	LOC_Os02g48670.1	"slowmo homolog, putative, expressed"	Medtr2g117710.1	MSF1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17173.1.S1_s_at	A	A1TS	POPTR_0012s13830	POPTR_0012s13830 (11)	scaffold_12:13814796-13815211(+) (11)	NA	NA	NA	AT5G62140.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g45460.1	expressed protein	AC229695_26.1	hypothetical protein AC229695.5 123453-125005 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17175.1.S1_at	A	A1TS	POPTR_0018s02810	POPTR_0018s02810 (11)	scaffold_18:2489667-2490208(-) (11)	NA	NA	NA	AT1G80450.1	VQ motif-containing protein 	LOC_Os01g54400.1	"VQ domain containing protein, putative, expressed"	Medtr2g017460.1	DNA-binding WRKY; VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17180.2.A1_at	A	A1TS	POPTR_0013s03820	POPTR_0013s03820 (11)	scaffold_13:2483139-2483435(+) (11)	NA	Q5N2J3	Sec-independent protein translocase protein tatA/E homolog	AT5G28750.1	Bacterial sec-independent translocation protein mttA/Hcf106 	LOC_Os03g43430.1	"mttA/Hcf106 family protein, putative, expressed"	Medtr1g126690.1	Twin-arginine translocation protein TatA/E 	GO:0015031|protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.17212.1.S1_at	A	A1TS	POPTR_0014s09170	POPTR_0014s09170 (11)	scaffold_14:6795589-6796090(+) (11)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008720.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17213.1.S1_at	A	A1TS	POPTR_0016s14140	POPTR_0016s14140 (9)	scaffold_16:13375034-13375513(-) (9)	NA	Q9LZW4	CBL-interacting serine/threonine-protein kinase 14	AT5G01820.1	serine/threonine protein kinase 1 	LOC_Os05g43840.1	"CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g082950.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.17213.2.S1_at	A	A1TS	POPTR_0014s11300	POPTR_0014s11300 (11)	scaffold_14:8405732-8405884(-) (11)	NA	Q93W77	"NifU-like protein 1, chloroplastic"	AT4G01940.1	NFU domain protein 1 	LOC_Os03g20010.1	"nifU, putative, expressed"	Medtr7g133310.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.17213.2.S1_s_at	A	A1TS	POPTR_0014s11300	POPTR_0014s11300 (11)	scaffold_14:8405318-8405734(-) (11)	NA	Q93W77	"NifU-like protein 1, chloroplastic"	AT4G01940.1	NFU domain protein 1 	LOC_Os03g20010.1	"nifU, putative, expressed"	Medtr7g133310.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.17213.4.A1_a_at	A	A1TS	POPTR_0002s19290	POPTR_0002s19290 (11)	scaffold_2:15252981-15253190(-) (11)	NA	Q93W77	"NifU-like protein 1, chloroplastic"	AT4G01940.1	NFU domain protein 1 	LOC_Os03g20010.1	"nifU, putative, expressed"	Medtr7g133310.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.17219.1.A1_at	A	A1TS	POPTR_0009s15830	POPTR_0009s15830 (11)	scaffold_1:15550905-15552063(-) (11)//scaffold_9:12167381-12168540(+) (11)	NA	Q6P8B3	Speckle-type POZ protein	AT3G03740.1	BTB-POZ and MATH domain 4 	LOC_Os03g57854.1	"MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr5g094610.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.17228.1.S1_at	A	A1TS	POPTR_0022s00490	POPTR_0022s00490 (11)	scaffold_22:188163-188902(+) (11)	NA	Q39019	Shaggy-related protein kinase kappa	AT1G09840.6	shaggy-like protein kinase 41 	LOC_Os03g62500.1	"CGMC_GSK.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g005450.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.17228.2.S1_a_at	A	A1TS	POPTR_0004s23430	POPTR_0004s23430 (11)	scaffold_4:22144459-22145105(-) (11)	NA	Q39019	Shaggy-related protein kinase kappa	AT1G09840.6	shaggy-like protein kinase 41 	LOC_Os03g62500.1	"CGMC_GSK.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g005450.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.17228.4.S1_a_at	A	A1TS	POPTR_0004s23430	POPTR_0004s23430 (11)	scaffold_4:22152832-22152960(-) (11)	NA	Q39019	Shaggy-related protein kinase kappa	AT1G09840.6	shaggy-like protein kinase 41 	LOC_Os03g62500.1	"CGMC_GSK.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g005450.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.17241.1.S1_at	A	A1TS	POPTR_0002s00600	POPTR_0002s00600 (11)	scaffold_2:262033-262820(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G33590.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g41810.1	"reductase, putative, expressed"	CU179634_4.1	NAD-dependent epimerase/dehydratase CU179634.6 12713-9139 H EGN_Mt090430 200	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.17242.1.S1_s_at	A	A1TS	POPTR_0010s24810	POPTR_0010s24810 (11)	scaffold_10:20819061-20819227(-) (11)	NA	NA	NA	AT5G04830.2	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os01g73500.1	expressed protein	Medtr1g112320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17242.2.S1_a_at	A	A1TS	POPTR_0013s01250	POPTR_0013s01250 (11)	scaffold_13:691282-691569(+) (11)	NA	Q84J70	Protein DEHYDRATION-INDUCED 19 homolog 3	AT3G05700.1	Drought-responsive family protein 	LOC_Os05g28980.1	"drought induced 19 protein, putative, expressed"	Medtr7g138070.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17242.3.S1_s_at	A	A2TS	POPTR_0005s02080	POPTR_0005s02080 (11)//POPTR_0013s01250 (11)	scaffold_13:687471-688579(+) (11)//scaffold_5:1344541-1345642(+) (11)	NA	Q84J70	Protein DEHYDRATION-INDUCED 19 homolog 3	AT3G05700.1	Drought-responsive family protein 	LOC_Os05g28980.1	"drought induced 19 protein, putative, expressed"	Medtr7g138070.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17243.1.S1_at	A	A1TS	POPTR_0006s10380	POPTR_0006s10380 (11)	scaffold_6:7777563-7777995(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17245.1.S1_a_at	A	A1TS	POPTR_0009s12310	POPTR_0009s12310 (11)	scaffold_9:10066321-10066760(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g162830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17258.1.A1_at	A	A1TA	POPTR_0008s00370	POPTR_0008s00370 (11)	scaffold_8:139343-140213(-) (11)	NA	NA	NA	AT5G23390.1	Plant protein of unknown function (DUF639) 	LOC_Os02g42530.1	expressed protein	Medtr6g028160.2	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17260.1.S1_s_at	A	A1TS	POPTR_0016s07600	POPTR_0016s07600 (11)	scaffold_16:5466056-5467567(-) (10)	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os11g05650.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17266.1.A1_s_at	A	A1TS	POPTR_0001s32130	POPTR_0001s32130 (11)	scaffold_1:30541079-30542877(+) (11)	NA	NA	NA	AT5G55125.2	Ribosomal protein L31 	LOC_Os11g31650.2	expressed protein	Medtr2g018410.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.1728.1.S1_s_at	A	A1TS	POPTR_0008s19370	POPTR_0008s19370 (11)	scaffold_8:13323430-13323692(+) (11)	NA	O15488	Glycogenin-2	AT1G60470.1	galactinol synthase 4 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.1729.1.A1_at	A	A1TS	POPTR_0007s12070	POPTR_0007s12070 (11)	scaffold_7:12390975-12391125(+) (11)	NA	Q40459	"Oxygen-evolving enhancer protein 1, chloroplastic"	AT3G50820.1	photosystem II subunit O-2 	LOC_Os01g31690.1	"oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed"	AC157372_6.1	Photosystem II manganese-stabilizing protein PsbO AC157372.2 27120-29314 F EGN_Mt090430 200	GO:0042549|photosystem II stabilization	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.17290.1.A1_at	A	A1TS	POPTR_0014s12540	POPTR_0014s12540 (11)	scaffold_14:9240094-9242544(+) (11)	NA	Q9H3S4	Thiamin pyrophosphokinase 1	AT1G02880.3	thiamin pyrophosphokinase1 	LOC_Os01g25440.1	"thiamin pyrophosphokinase 1, putative, expressed"	Medtr7g130470.1	"Thiamin pyrophosphokinase, catalytic region "	GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009229|thiamin diphosphate biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004788|thiamin diphosphokinase activity	NA
PtpAffx.17298.1.S1_a_at	A	A1TS	POPTR_0013s01650	POPTR_0013s01650 (11)	scaffold_13:937892-938455(+) (11)	NA	Q6MFY5	DNA-directed RNA polymerase I subunit RPA12	AT3G25940.1	TFIIB zinc-binding protein 	LOC_Os03g50380.1	"DNA-directed RNA polymerase I subunit RPA12, putative, expressed"	Medtr3g147130.1	Transcription factor TFIIS 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003676|nucleic acid binding||GO:0030528|transcription regulator activity||GO:0008270|zinc ion binding	NA
PtpAffx.17302.1.S1_at	A	A1TS	POPTR_0006s23770	POPTR_0006s23770 (11)	scaffold_6:22498366-22499372(-) (11)	NA	O50061	"50S ribosomal protein L4, chloroplastic"	AT1G07320.2	ribosomal protein L4 	LOC_Os03g15870.1	"ribosomal protein L4, putative, expressed"	Medtr3g136260.1	Ribosomal protein L4/L1e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.17308.1.S1_at	A	A1TS	POPTR_0016s05230	POPTR_0016s05230 (11)	scaffold_16:3187631-3188293(+) (11)	POPTR_0006s05510 (8)	Q9FL54	Chaperone protein dnaJ 6	AT3G12170.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g10220.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g111040.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.17310.1.S1_at	A	A1TS	POPTR_0003s15780	POPTR_0003s15780 (11)	scaffold_3:15485729-15486386(-) (11)	NA	Q43291	60S ribosomal protein L21-1	AT1G09690.1	Translation protein SH3-like family protein 	LOC_Os03g04750.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.17316.1.S1_at	A	A1TS	POPTR_0001s33460	POPTR_0001s33460 (11)	scaffold_1:31655464-31655957(-) (11)	NA	NA	NA	AT3G01990.1	ACT domain repeat 6 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr7g018130.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.17330.1.S1_at	A	A1TS	POPTR_0001s02290	POPTR_0001s02290 (10)	scaffold_1:1733426-1733889(-) (10)	NA	NA	NA	AT4G17940.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr5g029790.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17331.1.A1_at	A	A1TS	POPTR_0010s14480	POPTR_0010s14480 (11)	scaffold_10:14073137-14073510(-) (11)	NA	Q6NQI8	LAG1 longevity assurance homolog 3	AT1G13580.3	LAG1 longevity assurance homolog 3 	LOC_Os02g37080.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.17332.1.S1_s_at	A	A1TS	POPTR_0001s01170	POPTR_0001s01170 (11)	scaffold_1:915569-917107(-) (11)	NA	Q9F234	Alpha-glucosidase 2	AT3G23640.2	heteroglycan glucosidase 1 	LOC_Os07g23880.1	"glycosyl hydrolase, family 31, putative, expressed"	Medtr5g026760.1	"Vitamin K-dependent carboxylation/gamma-carboxyglutamic region; Glycoside hydrolase, family 31 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.17334.1.S1_at	A	A1TS	POPTR_0006s24570	POPTR_0006s24570 (11)	scaffold_6:23160211-23160690(+) (11)	NA	O49954	"Glycine dehydrogenase [decarboxylating], mitochondrial"	AT4G33010.1	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1734.2.S1_at	A	A1TS	POPTR_0010s20620	POPTR_0010s20620 (9)	scaffold_10:18130007-18130171(-) (9)	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os03g16150.3	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.17343.1.A1_at	A	A1TS	POPTR_0015s14550	POPTR_0015s14550 (11)	scaffold_15:14098136-14099120(+) (11)	NA	Q84KJ5	"Cryptochrome DASH, chloroplastic/mitochondrial"	AT4G25290.1	DNA photolyases;DNA photolyases 	LOC_Os09g36240.3	"deoxyribodipyrimidine photolyase family protein, expressed"	Medtr5g067450.1	Alpha/beta hydrolase fold 	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.17361.1.S1_s_at	A	A1TS	POPTR_0004s21120	POPTR_0004s21120 (11)	scaffold_4:20391457-20391966(-) (11)	NA	NA	NA	AT5G22210.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17363.1.A1_at	A	A1TS	POPTR_0006s11050	POPTR_0006s11050 (9)	scaffold_6:8376088-8376550(+) (9)	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g56330.1	"TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.17383.1.S1_s_at	A	A1TS	POPTR_0014s07250	POPTR_0014s07250 (11)	scaffold_14:5478210-5479235(-) (11)	NA	O80845	Peroxisomal membrane protein 11D	AT2G45740.3	peroxin 11D 	LOC_Os06g03660.2	"peroxisomal biogenesis factor 11, putative, expressed"	Medtr7g083810.1	Peroxisomal biogenesis factor 11 	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
PtpAffx.17383.2.A1_s_at	A	A1TS	POPTR_0002s15510	POPTR_0002s15510 (10)	scaffold_2:11593987-11594130(+) (10)	NA	O80845	Peroxisomal membrane protein 11D	AT2G45740.3	peroxin 11D 	LOC_Os03g02590.4	"peroxisomal biogenesis factor 11, putative, expressed"	Medtr7g083810.1	Peroxisomal biogenesis factor 11 	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
PtpAffx.17383.3.A1_at	A	A1MS	POPTR_0002s15510	POPTR_0002s15510 (11)	scaffold_2:11592854-11592919(+) (11)	NA	O80845	Peroxisomal membrane protein 11D	AT2G45740.3	peroxin 11D 	LOC_Os03g02590.4	"peroxisomal biogenesis factor 11, putative, expressed"	Medtr7g083810.1	Peroxisomal biogenesis factor 11 	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
PtpAffx.17388.1.S1_at	A	A1TS	POPTR_0010s24760	POPTR_0010s24760 (11)	scaffold_10:20786293-20786710(+) (11)	NA	Q9LZ17	40S ribosomal protein S17-4	AT5G04800.4	Ribosomal S17 family protein 	LOC_Os10g27190.1	"40S ribosomal protein S17, putative, expressed"	AC146550_7.1	Ribosomal protein S17e AC146550.40 29233-28681 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.17389.1.S1_at	A	A1TS	POPTR_0008s09630	POPTR_0008s09630 (11)	scaffold_8:5945526-5946990(-) (11)	NA	O94260	Putative G3BP-like protein	AT2G03640.2	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os03g30550.1	"RNA-binding protein-like, putative, expressed"	Medtr4g115310.1	RNA-binding region RNP-1 (RNA recognition motif); Nuclear transport factor 2 	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.1740.1.A1_s_at	A	A1TS	POPTR_0010s21420	POPTR_0010s21420 (11)	scaffold_10:18709518-18710331(+) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT2G28760.3	UDP-XYL synthase 6 	LOC_Os03g16980.2	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr2g114640.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.1741.1.S1_a_at	A	A1TS	POPTR_0019s07690	POPTR_0019s07690 (11)	scaffold_19:8819310-8819918(+) (11)	NA	Q09117	Bark storage protein B	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.17411.1.S1_at	A	A1TS	POPTR_0005s09720	POPTR_0005s09720 (11)	scaffold_5:6818797-6820016(+) (11)	NA	O81983	Seryl-tRNA synthetase	AT5G27470.1	seryl-tRNA synthetase / serine--tRNA ligase 	LOC_Os01g37837.1	"seryl-tRNA synthetase, putative, expressed"	Medtr1g099460.1	"Seryl-tRNA synthetase, class IIa "	GO:0006434|seryl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004828|serine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.17440.1.S1_a_at	A	A2TS	POPTR_0005s08930	POPTR_0005s08930 (11)//POPTR_0007s07080 (11)	scaffold_5:6263215-6263328(+) (11)//scaffold_7:5408729-5408842(+) (11)	NA	O00232	26S proteasome non-ATPase regulatory subunit 12	AT5G09900.2	"26S proteasome regulatory subunit, putative (RPN5) "	LOC_Os03g63430.1	"proteasome subunit, putative, expressed"	Medtr4g141520.2	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17440.1.S1_at	A	A1TS	POPTR_0005s08930	POPTR_0005s08930 (11)	scaffold_5:6263343-6263567(+) (11)	NA	O00232	26S proteasome non-ATPase regulatory subunit 12	AT5G09900.2	"26S proteasome regulatory subunit, putative (RPN5) "	LOC_Os03g63430.1	"proteasome subunit, putative, expressed"	Medtr4g141520.2	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17440.3.S1_a_at	A	A1TS	POPTR_0007s07080	POPTR_0007s07080 (11)	scaffold_7:5409007-5409211(+) (11)	NA	O00232	26S proteasome non-ATPase regulatory subunit 12	AT5G09900.2	"26S proteasome regulatory subunit, putative (RPN5) "	LOC_Os03g63430.1	"proteasome subunit, putative, expressed"	Medtr4g141520.2	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17445.1.S1_a_at	A	A2TS	POPTR_0001s44230	POPTR_0001s44230 (11)//POPTR_0011s13580 (11)	scaffold_1:44684352-44685022(+) (11)//scaffold_11:16301931-16302603(+) (11)	NA	Q9FH37	Transcription factor ILR3	AT5G54680.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g35870.1	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr4g111220.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.17445.1.S1_at	A	A1TS	POPTR_0001s44230	POPTR_0001s44230 (11)	scaffold_1:44684677-44685032(+) (11)	NA	Q9FH37	Transcription factor ILR3	AT5G54680.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g35870.1	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr4g111220.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.17445.2.S1_at	A	A1TS	POPTR_0011s13580	POPTR_0011s13580 (11)	scaffold_11:16302257-16302795(+) (11)	NA	Q9FH37	Transcription factor ILR3	AT5G54680.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g35870.1	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr4g111220.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.17454.1.A1_at	A	A1TS	POPTR_0005s05270	POPTR_0005s05270 (10)	scaffold_5:3491091-3491542(+) (10)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17456.6.A1_a_at	A	A2TS	POPTR_0074s00210	POPTR_0074s00210 (9)//POPTR_0074s00230 (9)	scaffold_3:1070584-1070616(-) (9)//scaffold_74:2842-2874(+) (9)//scaffold_74:28922-28954(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1746.1.S1_at	A	A1TS	POPTR_0004s17960	POPTR_0004s17960 (11)	scaffold_4:18001858-18002303(+) (11)	NA	O65351	Subtilisin-like protease	AT4G34980.1	subtilisin-like serine protease 2 	LOC_Os03g13930.1	"OsSub28 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.1747.1.A1_at	A	A1TS	POPTR_0003s17650	POPTR_0003s17650 (11)	scaffold_3:16963588-16964099(+) (11)	NA	Q69ZF3	Non-lysosomal glucosylceramidase	AT3G24180.2	"Beta-glucosidase, GBA2 type family protein "	LOC_Os10g33420.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.1747.1.A1_s_at	A	A1TS	POPTR_0003s17650	POPTR_0003s17650 (11)	scaffold_3:16963557-16964070(+) (11)	NA	Q69ZF3	Non-lysosomal glucosylceramidase	AT3G24180.2	"Beta-glucosidase, GBA2 type family protein "	LOC_Os10g33420.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.17475.1.A1_at	A	A1MS	POPTR_0001s33920	POPTR_0001s33920 (11)	scaffold_1:32082992-32083099(+) (11)	NA	P92942	Chloride channel protein CLC-b	AT3G27170.1	chloride channel B 	LOC_Os12g25200.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr6g025600.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.17475.1.A1_s_at	A	A1TS	POPTR_0001s33920	POPTR_0001s33920 (11)	scaffold_1:32082872-32082983(+) (11)	NA	P92942	Chloride channel protein CLC-b	AT3G27170.1	chloride channel B 	LOC_Os12g25200.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr6g025600.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.17484.1.S1_a_at	A	A1TS	POPTR_0008s10230	POPTR_0008s10230 (11)	scaffold_8:6406593-6407194(-) (11)	NA	NA	NA	AT3G17120.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g04150.2	expressed protein	Medtr2g037800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17499.1.S1_s_at	A	A1TS	POPTR_0001s25120	POPTR_0001s25120 (11)	scaffold_1:24346397-24346803(-) (11)	NA	Q9USU9	Transcription initiation factor IIA large subunit	AT1G07470.1	"Transcription factor IIA, alpha/beta subunit "	LOC_Os05g22670.1	"transcription factor IIA large subunit, putative, expressed"	Medtr2g117270.1	"Transcription initiation factor IIA, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005672|transcription factor TFIIA complex
PtpAffx.17539.1.S1_s_at	A	A1TS	POPTR_0009s04370	POPTR_0009s04370 (11)	scaffold_9:4772142-4772547(-) (11)	NA	Q39065	Copper transporter 1	AT5G59030.1	copper transporter 1 	LOC_Os01g56420.1	"ctr copper transporter family protein, putative, expressed"	Medtr4g087380.1	Ctr copper transporter 	GO:0006825|copper ion transport	GO:0005375|copper ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.17540.2.A1_a_at	A	A1TS	POPTR_0018s01890	POPTR_0018s01890 (11)	scaffold_18:1708134-1708366(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT2G45180.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46820.1	"LTPL121 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr1g014100.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17540.2.A1_x_at	A	A1TS	POPTR_0018s01890	POPTR_0018s01890 (11)	scaffold_18:1708014-1708366(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT2G45180.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46820.1	"LTPL121 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr1g014100.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17540.4.S1_at	A	A1MS	POPTR_0006s12760	POPTR_0006s12760 (10)	scaffold_6:9927216-9928242(-) (10)	NA	P26683	RNA polymerase sigma factor rpoD	AT2G36990.1	RNApolymerase sigma-subunit F 	LOC_Os08g14450.1	"RNA polymerase sigma factor, putative, expressed"	Medtr1g076430.1	Sigma-70 factor; ; 	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.17551.1.S1_at	A	A1MS	POPTR_0003s08250	POPTR_0003s08250 (11)	scaffold_3:9671030-9671166(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os10g41510.1	"calcineurin B, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.17557.1.S1_a_at	A	A1TS	POPTR_0008s07440	POPTR_0008s07440 (11)	scaffold_8:4570366-4571513(-) (11)	NA	Q944B6	"Arogenate dehydrogenase 1, chloroplastic"	AT5G34930.1	arogenate dehydrogenase 	LOC_Os06g35050.1	"arogenate dehydrogenase 1, chloroplast precursor, putative, expressed"	Medtr3g097120.1	"Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17561.1.A1_s_at	A	A1TS	POPTR_0013s04830	POPTR_0013s04830 (11)	scaffold_13:3363410-3365439(+) (11)	NA	Q9SWE7	V-type proton ATPase subunit E	AT4G11150.1	vacuolar ATP synthase subunit E1 	LOC_Os01g46980.1	"vacuolar ATP synthase subunit E, putative, expressed"	Medtr5g009830.1	"H+-transporting two-sector ATPase, E subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.17561.2.A1_s_at	A	A2TS	POPTR_0013s04830	POPTR_0013s04830 (11)//POPTR_0019s04470 (11)	scaffold_13:3362023-3363317(+) (11)//scaffold_19:4626988-4628186(+) (11)	NA	Q9SWE7	V-type proton ATPase subunit E	AT4G11150.1	vacuolar ATP synthase subunit E1 	LOC_Os01g46980.1	"vacuolar ATP synthase subunit E, putative, expressed"	Medtr5g009830.1	"H+-transporting two-sector ATPase, E subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.17564.1.S1_at	A	A1TS	POPTR_0009s06470	POPTR_0009s06470 (11)	scaffold_9:6235885-6237295(-) (11)	POPTR_0009s06450 (8)	NA	NA	AT3G08010.1	RNA binding 	LOC_Os02g39740.1	"psaB translation factor, putative, expressed"	Medtr3g029920.1	Protein of unknown function DUF1092 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17565.1.A1_at	A	A1TS	POPTR_0014s03060	POPTR_0014s03060 (11)	scaffold_14:2486816-2487016(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g28510.1	"EF hand family protein, putative, expressed"	Medtr1g024720.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17571.1.A1_at	A	A1TS	POPTR_0010s21730	POPTR_0010s21730 (11)	scaffold_10:18900508-18901720(+) (11)	NA	P82538	"PsbP-like protein 1, chloroplastic"	AT3G55330.1	PsbP-like protein 1 	LOC_Os08g25900.1	"PsbP, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.17571.2.S1_a_at	A	A1TS	POPTR_0010s21730	POPTR_0010s21730 (11)	scaffold_10:18899257-18899350(+) (11)	NA	P82538	"PsbP-like protein 1, chloroplastic"	AT3G55330.1	PsbP-like protein 1 	LOC_Os08g25900.1	"PsbP, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.17575.1.S1_at	A	A1TS	POPTR_0019s13420	POPTR_0019s13420 (11)	scaffold_19:14347114-14347661(+) (11)	NA	Q8GY60	Probable protein phosphatase 2C 52	AT4G03415.2	Protein phosphatase 2C family protein 	LOC_Os07g37890.1	"protein phosphatase 2C, putative, expressed"	Medtr4g045040.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17581.1.A1_at	A	A1TS	POPTR_0002s16960	POPTR_0002s16960 (11)	scaffold_2:12728801-12729333(+) (11)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17582.1.A1_at	A	A1TS	POPTR_0011s09220	POPTR_0011s09220 (11)	scaffold_11:11414571-11414689(-) (11)	NA	A9LNK9	Cleavage and polyadenylation specificity factor CPSF30	AT1G30460.2	cleavage and polyadenylation specificity factor 30 	LOC_Os06g46400.1	"ATCPSF30/CPSF30, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.17582.1.A1_s_at	A	A1TS	POPTR_0011s09220	POPTR_0011s09220 (11)	scaffold_11:11414781-11415022(-) (11)	NA	A9LNK9	Cleavage and polyadenylation specificity factor CPSF30	AT1G30460.2	cleavage and polyadenylation specificity factor 30 	LOC_Os06g46400.1	"ATCPSF30/CPSF30, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.17584.1.A1_at	A	A1TS	POPTR_0015s00280	POPTR_0015s00280 (9)	scaffold_15:133083-133531(+) (11)	NA	NA	NA	AT5G24660.1	response to low sulfur 2 	NA	NA	Medtr3g122000.1	"UP-9A, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1759.1.S1_at	A	A1TS	POPTR_0009s11750	POPTR_0009s11750 (11)	scaffold_9:9691063-9691490(-) (11)	NA	Q942D4	BURP domain-containing protein 3	AT1G49320.1	unknown seed protein like 1 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr3g159570.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17610.1.A1_at	A	A1TS	POPTR_0001s04200	POPTR_0001s04200 (11)	scaffold_1:3327083-3327224(-) (11)	NA	Q8BKC5	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os07g38760.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.17630.1.S1_at	A	A1TS	POPTR_0011s02960	POPTR_0011s02960 (11)	scaffold_11:2906606-2907808(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17632.1.A1_a_at	A	A1TS	POPTR_0008s11640	POPTR_0008s11640 (11)	scaffold_8:7428152-7429879(-) (11)	NA	NA	NA	AT1G29700.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os12g44370.1	expressed protein	Medtr5g068760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17636.1.A1_at	A	A1TS	POPTR_0012s02830	POPTR_0012s02830 (11)	scaffold_12:2310209-2310612(+) (11)	NA	NA	NA	AT1G64720.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g02910.1	"membrane related protein CP5, putative, expressed"	Medtr3g122780.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17636.2.A1_at	A	A1TS	POPTR_0015s00730	POPTR_0015s00730 (11)	scaffold_15:423219-423702(-) (11)	NA	NA	NA	AT1G64720.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g02910.1	"membrane related protein CP5, putative, expressed"	Medtr3g122780.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17644.1.A1_at	A	A1TS	POPTR_0002s17090	POPTR_0002s17090 (10)	scaffold_2:12874716-12875446(+) (10)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.17648.2.A1_a_at	A	A1TS	POPTR_0013s10500	POPTR_0013s10500 (11)	scaffold_13:10809884-10816641(-) (11)	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT1G22850.1	SNARE associated Golgi protein family 	LOC_Os01g66170.1	"SNARE associated Golgi protein, putative, expressed"	Medtr4g033450.1	"UPF0043 membrane protein slr0305, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17653.1.A1_at	A	A1TS	POPTR_0019s14270	POPTR_0019s14270 (11)	scaffold_19:15016496-15017683(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17660.1.S1_at	A	A1TS	POPTR_0014s03990	POPTR_0014s03990 (10)	scaffold_14:3173223-3173749(-) (10)	NA	Q09463	RING finger protein 5	AT1G19310.1	RING/U-box superfamily protein 	LOC_Os12g43930.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17660.2.S1_s_at	A	A1TS	POPTR_0002s13410	POPTR_0002s13410 (11)	scaffold_2:9947907-9948416(-) (11)	NA	Q09463	RING finger protein 5	AT1G19310.1	RING/U-box superfamily protein 	LOC_Os12g43930.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17661.1.A1_at	A	A1TS	POPTR_0019s14140	POPTR_0019s14140 (9)	scaffold_19:14895975-14896395(-) (9)	NA	Q7XBH4	Myb-related protein Myb4	AT2G31180.1	myb domain protein 14 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr2g103070.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17664.1.S1_at	A	A1TS	POPTR_0005s09580	POPTR_0005s09580 (9)	scaffold_5:6683841-6685860(-) (9)	NA	Q96LU5	Mitochondrial inner membrane protease subunit 1	AT1G53530.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os11g40500.3	"OsSigP7 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr8g043500.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1767.1.S1_a_at	A	A1TS	POPTR_0010s00270	POPTR_0010s00270 (11)	scaffold_10:59797-59959(-) (11)	NA	O50001	Major allergen Pru ar 1	AT1G24020.2	MLP-like protein 423 	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.17671.1.S1_at	A	A1TS	POPTR_0003s04470	POPTR_0003s04470 (11)	scaffold_3:5198244-5198735(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT1G03840.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g09850.3	"ZOS1-04 - C2H2 zinc finger protein, expressed"	Medtr8g018830.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.17690.1.S1_a_at	A	A1MS	POPTR_0005s12900	POPTR_0005s12900 (11)	scaffold_5:9725596-9726331(+) (11)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT2G23790.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17691.1.S1_s_at	A	A1TS	POPTR_0002s01650	POPTR_0002s01650 (11)	scaffold_2:878336-878616(-) (11)	NA	Q96324	Glutathione S-transferase	AT3G03190.1	glutathione S-transferase F11 	LOC_Os03g04260.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17699.1.A1_at	A	A1TS	POPTR_0004s05140	POPTR_0004s05140 (11)	scaffold_4:3879461-3879922(-) (11)	NA	O22959	Peroxidase 19	AT2G34060.1	Peroxidase superfamily protein 	LOC_Os08g42030.1	"peroxidase precursor, putative, expressed"	Medtr5g015990.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.1770.1.A1_x_at	A	A1TS	POPTR_0017s05770	POPTR_0017s05770 (11)	scaffold_17:4498769-4500411(-) (11)	NA	Q42896	Fructokinase-2	AT3G59480.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g66940.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1770.11.A1_a_at	A	A1TS	POPTR_0009s04540	POPTR_0009s04540 (11)	scaffold_9:4875122-4875980(+) (11)	NA	Q9ZW34	Cytosolic enolase 3	AT2G29560.1	cytosolic enolase 	LOC_Os03g15950.1	"enolase, putative, expressed"	Medtr5g104640.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
PtpAffx.1770.2.A1_s_at	A	A1TS	POPTR_0007s01850	POPTR_0007s01850 (11)	scaffold_7:1065513-1066013(-) (11)	NA	Q42896	Fructokinase-2	AT2G31390.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g66940.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1770.3.S1_s_at	A	A1TS	POPTR_0001s29530	POPTR_0001s29530 (11)	scaffold_1:28180486-28180619(+) (11)	NA	P11670	Basic form of pathogenesis-related protein 1	AT2G14580.1	basic pathogenesis-related protein 1 	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr4g122190.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1770.8.A1_s_at	A	A1TS	POPTR_0017s05770	POPTR_0017s05770 (9)	scaffold_17:4498986-4500412(-) (9)	NA	Q42896	Fructokinase-2	AT3G59480.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g66940.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17700.1.A1_s_at	A	A1TS	POPTR_0008s08040	POPTR_0008s08040 (11)	scaffold_8:4963784-4964078(-) (11)	NA	A4GSN8	Nuclear-pore anchor	AT1G79280.1	nuclear pore anchor 	LOC_Os02g50790.1	"nuclear-pore anchor, putative, expressed"	Medtr2g085400.1	Alkaline phosphatase; Prefoldin; TPR/MLP1/MLP2-like 	GO:0006606|protein import into nucleus	NA	GO:0005643|nuclear pore
PtpAffx.17706.1.A1_at	A	A1TS	POPTR_0012s07130	POPTR_0012s07130 (10)	scaffold_12:7855915-7857114(-) (10)	NA	Q9CA64	Transcription factor bHLH135	AT3G47710.1	BANQUO 3 	LOC_Os10g26460.1	"bHLH family protein, putative, expressed"	Medtr5g040160.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17713.2.A1_s_at	A	A1TS	POPTR_0002s09080	POPTR_0002s09080 (11)	scaffold_2:6429572-6429961(+) (11)	NA	NA	NA	AT1G36370.1	serine hydroxymethyltransferase 7 	NA	NA	Medtr2g006550.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.1772.1.S1_s_at	A	A1TS	POPTR_0001s15910	POPTR_0001s15910 (11)	scaffold_1:12754830-12755457(+) (11)	NA	O64764	"Thioredoxin O1, mitochondrial"	AT2G35010.2	thioredoxin O1 	LOC_Os06g45510.2	"thioredoxin, putative, expressed"	NA	NA	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.17728.1.S1_s_at	A	A2TS	POPTR_0001s06930	POPTR_0003s19230 (11)//POPTR_0001s06930 (11)	scaffold_1:5293134-5293795(+) (11)//scaffold_3:18022608-18023407(-) (11)	NA	A7MCT6	Ethanolamine kinase 2	AT1G74320.1	Protein kinase superfamily protein 	LOC_Os01g51920.1	"phosphotransferase, putative, expressed"	Medtr3g005000.1	"Choline kinase, N-terminal; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17744.2.A1_at	A	A1TS	POPTR_0001s18950	POPTR_0001s18950 (9)	scaffold_1:16182247-16182762(+) (9)	NA	NA	NA	AT1G52140.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g36070.1	expressed protein	Medtr2g122250.1	Biotin-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17754.1.A1_at	A	A1TS	POPTR_0002s17980	POPTR_0002s17980 (9)	scaffold_2:13846001-13846281(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17757.2.S1_s_at	A	A1TS	POPTR_0017s14120	POPTR_0017s14120 (11)	scaffold_17:14296395-14297632(-) (11)	NA	NA	NA	AT3G02420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g42010.1	expressed protein	AC233572_11.1	hypothetical protein AC233572.2 52137-58374 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17764.1.A1_at	A	A1TS	POPTR_0010s10040	POPTR_0010s10040 (11)	scaffold_10:10630662-10631979(-) (11)	NA	P92943	Chloride channel protein CLC-d	AT5G26240.1	chloride channel D 	LOC_Os03g48940.1	"chloride channel protein CLC-d, putative, expressed"	Medtr5g006120.3	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.17771.1.A1_at	A	A1TS	POPTR_0002s26150	POPTR_0002s26150 (9)	scaffold_2:23112027-23113152(+) (9)	NA	Q9FRL3	Sugar transporter ERD6-like 6	AT1G75220.1	Major facilitator superfamily protein 	LOC_Os05g50280.1	"transporter family protein, putative, expressed"	Medtr8g093160.2	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.17776.1.A1_at	A	A1TS	POPTR_0009s02850	POPTR_0009s02850 (9)	scaffold_9:3607837-3608275(+) (11)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os09g27450.1	"homeobox associated leucine zipper, putative, expressed"	Medtr7g112150.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.17781.1.A1_at	A	A1TS	POPTR_0015s00590	POPTR_0015s00590 (11)	scaffold_15:356090-356428(-) (11)	NA	A7QEU4	Peroxidase 5	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os03g02939.1	"peroxidase precursor, putative, expressed"	Medtr3g122440.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.17782.1.A1_a_at	A	A1TS	POPTR_0018s01290	POPTR_0018s01290 (10)	scaffold_18:1255750-1257588(+) (11)	NA	Q8VYU4	Carbon catabolite repressor protein 4 homolog 6	AT5G11350.1	DNAse I-like superfamily protein 	LOC_Os01g42490.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr4g158510.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17784.1.A1_at	A	A1TS	POPTR_0014s14070	POPTR_0014s14070 (11)	scaffold_14:10302330-10302877(+) (11)	NA	NA	NA	AT5G13970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g097090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17792.2.A1_a_at	A	A1TS	POPTR_0006s23230	POPTR_0006s23230 (11)	scaffold_6:22024572-22026164(+) (11)	NA	NA	NA	AT5G02740.1	Ribosomal protein S24e family protein 	LOC_Os03g17450.1	"nucleotide binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.178.2.S1_a_at	A	A2TS	POPTR_0002s22460	POPTR_0014s13420 (11)//POPTR_0002s22460 (11)	scaffold_14:9882712-9882750(+) (11)//scaffold_2:19208243-19208281(+) (11)	NA	Q9ZT91	"Elongation factor Tu, mitochondrial"	AT4G02930.1	GTP binding Elongation factor Tu family protein 	LOC_Os03g63410.1	"elongation factor Tu, putative, expressed"	Medtr3g115100.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.17806.1.S1_at	A	A1TS	POPTR_0010s13500	POPTR_0010s13500 (11)	scaffold_10:13315886-13316781(-) (11)	NA	Q9SDL7	Homocysteine S-methyltransferase 1	AT3G25900.1	Homocysteine S-methyltransferase family protein 	LOC_Os03g12110.1	"homocysteine S-methyltransferase protein, putative, expressed"	Medtr5g067080.1	Homocysteine S-methyltransferase 	NA	GO:0008898|homocysteine S-methyltransferase activity	NA
PtpAffx.1781.1.S1_at	A	A1TS	POPTR_0010s15680	POPTR_0010s15680 (11)	scaffold_10:14823045-14823372(+) (11)	NA	NA	NA	AT5G49480.1	Ca2+-binding protein 1 	LOC_Os03g19720.1	"EF hand family protein, putative, expressed"	Medtr8g137350.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17810.1.A1_at	A	A1TS	POPTR_0002s17110	POPTR_0002s17110 (11)	scaffold_2:12908074-12910587(+) (11)	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17813.1.S1_at	A	A1TS	POPTR_0006s22850	POPTR_0006s22850 (11)	scaffold_6:21735099-21736205(+) (11)//scaffold_6:21743333-21753327(+) (11)	NA	NA	NA	AT3G52630.2	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g14980.2	"RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed"	Medtr7g127630.1	Replication factor A protein 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17817.1.A1_at	A	A1TA	POPTR_0004s22400	POPTR_0004s22400 (11)	scaffold_4:21317938-21318406(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT2G36970.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os10g30560.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g111140.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17823.1.A1_a_at	A	A1TS	POPTR_0012s03410	POPTR_0012s03410 (11)	scaffold_12:2702662-2702756(+) (11)	NA	Q6EU14	Protein argonaute 1A	AT1G48410.1	Stabilizer of iron transporter SufD / Polynucleotidyl transferase 	LOC_Os02g45070.1	"PINHEAD, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17830.1.A1_at	A	A1TS	POPTR_0015s07940	POPTR_0015s07940 (11)	scaffold_15:9204844-9205395(-) (11)	NA	Q9LMC9	Germin-like protein subfamily T member 2	AT1G18980.1	RmlC-like cupins superfamily protein 	LOC_Os05g19670.1	"Cupin domain containing protein, expressed"	Medtr1g103240.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.17833.1.A1_at	A	A1TS	POPTR_0006s23360	POPTR_0006s23360 (11)	scaffold_6:22112805-22113314(-) (11)	NA	Q8H7N9	E3 ubiquitin-protein ligase Os03g0188200	AT5G20885.1	RING/U-box superfamily protein 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17839.1.S1_at	A	A1TS	POPTR_0012s07930	POPTR_0012s07930 (11)	scaffold_12:8928922-8929094(+) (11)	NA	Q9FL12	Protease Do-like 9	AT5G40200.1	DegP protease 9 	LOC_Os02g50880.1	"OsDegp3 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.17839.1.S1_s_at	A	A1TS	POPTR_0012s07930	POPTR_0012s07930 (11)	scaffold_12:8928191-8928902(+) (11)	NA	Q9FL12	Protease Do-like 9	AT5G40200.1	DegP protease 9 	LOC_Os02g50880.1	"OsDegp3 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.17839.2.A1_at	A	A1TS	POPTR_0012s07930	POPTR_0012s07930 (11)	scaffold_12:8929664-8929788(+) (11)	NA	Q9FL12	Protease Do-like 9	AT5G40200.1	DegP protease 9 	LOC_Os02g50880.1	"OsDegp3 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.17839.2.A1_s_at	A	A1TS	POPTR_0012s07930	POPTR_0012s07930 (11)	scaffold_12:8929231-8929598(+) (11)	NA	Q9FL12	Protease Do-like 9	AT5G40200.1	DegP protease 9 	LOC_Os02g50880.1	"OsDegp3 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.17846.1.A1_at	A	A1TS	POPTR_0001s03300	POPTR_0001s03300 (11)	scaffold_1:2690681-2691188(-) (11)	NA	Q94AN4	AP2-like ethylene-responsive transcription factor At1g16060	AT1G16060.1	ARIA-interacting double AP2 domain protein 	LOC_Os09g25600.1	"AP2 domain containing protein, expressed"	Medtr8g144720.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.17856.1.A1_at	A	A1TS	POPTR_0018s01920	POPTR_0018s01920 (11)	scaffold_18:1750805-1751213(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT2G25320.1	TRAF-like family protein 	LOC_Os02g39990.1	expressed protein	Medtr3g137580.1	MATH 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.17860.1.A1_s_at	A	A1TS	POPTR_0009s15110	POPTR_0009s15110 (11)	scaffold_9:11726369-11726789(+) (11)	NA	Q8LA14	Putative phytosulfokines 6	AT3G44735.2	PHYTOSULFOKINE 3 PRECURSOR 	NA	NA	NA	NA	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.17860.4.S1_at	A	A1MS	POPTR_0015s00210	POPTR_0015s00210 (10)	scaffold_15:7378-8341(-) (11)	NA	Q94BN2	Spermine synthase	AT5G53120.5	spermidine synthase 3 	LOC_Os02g15550.2	"spermidine synthase, putative, expressed"	Medtr3g124370.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.17877.1.A1_at	A	A1TS	POPTR_0003s13280	POPTR_0003s13280 (11)	scaffold_3:13661326-13661686(-) (11)	NA	NA	NA	AT5G41580.1	RING/U-box superfamily protein 	LOC_Os06g06870.1	"zinc finger protein, putative, expressed"	Medtr5g010000.1	"Zinc finger, MIZ-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1788.2.A1_at	A	A1TS	POPTR_0004s21030	POPTR_0004s21030 (9)	scaffold_4:20335674-20338080(+) (9)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g46970.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17880.1.S1_at	A	A1TS	POPTR_0016s10080	POPTR_0016s10080 (11)	scaffold_16:8224639-8225952(+) (11)	POPTR_0006s09400 (7)	Q52EB3	Serine/threonine-protein kinase ATG1	AT2G37840.1	Protein kinase superfamily protein 	LOC_Os03g16130.1	"CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g144060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.17885.1.A1_a_at	A	A1TS	POPTR_0008s10310	POPTR_0008s10310 (11)	scaffold_8:6464091-6464604(-) (11)	NA	Q9LSN7	Transcription factor bHLH147	AT3G17100.2	sequence-specific DNA binding transcription factors 	LOC_Os03g19780.1	expressed protein	Medtr8g137080.1	transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17886.2.S1_s_at	A	A1TS	POPTR_0004s16860	POPTR_0004s16860 (11)	scaffold_4:17235699-17236068(+) (11)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os01g54210.1	"GATA zinc finger domain containing protein, expressed"	Medtr4g097100.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.179.1.S1_s_at	A	A1TS	POPTR_0014s03000	POPTR_0014s03000 (11)	scaffold_14:2461353-2461675(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17902.1.A1_at	A	A1TS	POPTR_0004s06280	POPTR_0004s06280 (11)	scaffold_4:4980668-4981202(+) (11)	NA	NA	NA	AT1G29690.1	MAC/Perforin domain-containing protein 	LOC_Os01g54510.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr2g021290.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17912.1.A1_at	A	A1TS	POPTR_0003s06970	POPTR_0003s06970 (11)	scaffold_3:8569977-8570615(-) (11)	NA	Q54I81	Translation initiation factor eIF-2B subunit alpha	AT1G53900.1	Eukaryotic translation initiation factor 2B (eIF-2B) family protein 	LOC_Os12g31380.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr8g026500.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.17912.1.A1_s_at	A	A2TS	POPTR_0001s16360	POPTR_0001s16360 (11)//POPTR_0003s06970 (11)	scaffold_1:13149702-13150299(+) (11)//scaffold_3:8570101-8570705(-) (11)	NA	Q54I81	Translation initiation factor eIF-2B subunit alpha	AT1G53900.1	Eukaryotic translation initiation factor 2B (eIF-2B) family protein 	LOC_Os12g31380.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr8g026500.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.17914.2.A1_a_at	A	A1TS	POPTR_0008s05720	POPTR_0008s05720 (11)	scaffold_8:3312832-3313072(-) (11)	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17914.3.A1_a_at	A	A2TS	POPTR_0008s05720	POPTR_0008s05720 (11)//POPTR_0010s21000 (10)	scaffold_10:18440355-18440498(+) (10)//scaffold_8:3311918-3312277(-) (11)	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17919.1.S1_at	A	A1TS	POPTR_0001s16430	POPTR_0001s16430 (11)	scaffold_1:13225723-13226275(-) (10)	NA	O80377	40S ribosomal protein SA	AT1G72370.1	40s ribosomal protein SA 	LOC_Os03g08440.1	"ribosomal protein S2, putative, expressed"	AC235488_10.1	"Ribosomal protein S2, eukaryotic and archaeal form AC235488.1 35915-38592 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.17919.2.A1_at	A	A1TS	POPTR_0003s06880	POPTR_0003s06880 (11)	scaffold_3:8423725-8423759(+) (11)	NA	A5BUU4	40S ribosomal protein SA	AT3G04770.2	40s ribosomal protein SA B 	LOC_Os03g08440.2	"ribosomal protein S2, putative, expressed"	AC235488_10.1	"Ribosomal protein S2, eukaryotic and archaeal form AC235488.1 35915-38592 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.17919.2.A1_s_at	A	A1TS	POPTR_0003s06880	POPTR_0003s06880 (11)	scaffold_3:8423691-8423774(+) (11)	NA	A5BUU4	40S ribosomal protein SA	AT3G04770.2	40s ribosomal protein SA B 	LOC_Os03g08440.2	"ribosomal protein S2, putative, expressed"	AC235488_10.1	"Ribosomal protein S2, eukaryotic and archaeal form AC235488.1 35915-38592 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.17919.2.A1_x_at	A	A1TS	POPTR_0003s06880	POPTR_0003s06880 (11)	scaffold_3:8423327-8423780(+) (11)	NA	A5BUU4	40S ribosomal protein SA	AT3G04770.2	40s ribosomal protein SA B 	LOC_Os03g08440.2	"ribosomal protein S2, putative, expressed"	AC235488_10.1	"Ribosomal protein S2, eukaryotic and archaeal form AC235488.1 35915-38592 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.17925.1.S1_at	A	A1TS	POPTR_0001s29320	POPTR_0001s29320 (11)	scaffold_1:28038917-28039473(+) (11)	NA	Q9C5C8	"Peptide methionine sulfoxide reductase B2, chloroplastic"	AT4G21860.2	methionine sulfoxide reductase B 2 	LOC_Os05g33510.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr4g121860.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
PtpAffx.17938.1.S1_at	A	A2TS	POPTR_0005s12990	POPTR_0278s00230 (11)//POPTR_0005s12990 (11)	scaffold_278:39809-40177(-) (11)//scaffold_5:9816448-9816816(-) (11)	NA	Q8W4F0	Protein DA1-related 1	AT4G36860.1	LIM domain-containing protein 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr5g018830.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.17948.2.A1_s_at	A	A1TS	POPTR_0006s12910	POPTR_0006s12910 (11)	scaffold_6:10101220-10102110(+) (11)	NA	Q9ZUU4	"Ribonucleoprotein At2g37220, chloroplastic"	AT2G37220.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g43810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g076830.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.17949.1.A1_a_at	A	A2TS	POPTR_0001s13300	POPTR_0003s16430 (11)//POPTR_0001s13300 (11)	scaffold_1:10392226-10393777(+) (11)//scaffold_3:16009373-16010540(+) (11)	NA	NA	NA	AT5G13190.1	CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g31100.1	"LITAF-domain-containing protein, putative, expressed"	Medtr7g005140.1	LPS-induced tumor necrosis factor alpha factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17950.1.A1_at	A	A1TS	POPTR_0011s02950	POPTR_0011s02950 (11)	scaffold_11:2905150-2906098(+) (11)	NA	NA	NA	AT5G46530.1	AWPM-19-like family protein 	LOC_Os01g14530.1	"AWPM-19-like membrane family protein, putative, expressed"	Medtr6g084000.1	AWPM-19-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17962.1.A1_at	A	A1TS	POPTR_0010s17430	POPTR_0010s17430 (11)	scaffold_10:16003517-16004238(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.2	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.17962.2.S1_at	A	A1TS	POPTR_0010s17430	POPTR_0010s17430 (10)	scaffold_10:16002576-16003297(-) (10)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.2	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.1797.1.A1_a_at	A	A1TS	POPTR_0006s11230	POPTR_0006s11230 (11)	scaffold_6:8526503-8526643(-) (11)	NA	NA	NA	AT2G01410.1	NHL domain-containing protein 	LOC_Os01g42140.1	expressed protein	Medtr7g020710.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1797.2.A1_at	A	A1TS	POPTR_0006s11230	POPTR_0006s11230 (11)	scaffold_6:8525183-8525579(-) (11)	NA	NA	NA	AT2G01410.1	NHL domain-containing protein 	LOC_Os01g42140.1	expressed protein	Medtr7g020710.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17971.1.A1_at	A	A1TS	POPTR_0003s09210	POPTR_0003s09210 (10)	scaffold_3:10534415-10535261(-) (10)	NA	B3H6K1	Uncharacterized protein At4g17910	AT4G17910.1	"transferases, transferring acyl groups "	LOC_Os03g26090.1	"GPI-anchored wall transfer protein 1, putative, expressed"	Medtr8g078080.1	GWT1 	GO:0006506|GPI anchor biosynthetic process	"GO:0016746|""transferase activity, transferring acyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.17976.1.A1_at	A	A1TS	POPTR_0009s01170	POPTR_0009s01170 (11)	scaffold_9:1303303-1303497(-) (11)	NA	NA	NA	AT3G44960.1	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g31930.1	"shugoshin-1, putative, expressed"	Medtr4g076490.1	hypothetical protein 	GO:0045132|meiotic chromosome segregation	NA	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.17980.1.A1_a_at	A	A1TS	POPTR_0003s09420	POPTR_0003s09420 (11)	scaffold_3:10709822-10710269(-) (11)	NA	NA	NA	AT2G35470.1	unknown protein; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g029520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17980.3.A1_a_at	A	A1TS	POPTR_0003s09420	POPTR_0003s09420 (11)	scaffold_3:10709606-10709695(-) (11)	NA	NA	NA	AT2G35470.1	unknown protein; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g029520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17983.1.A1_s_at	A	A1TS	POPTR_0017s06650	POPTR_0017s06650 (11)	scaffold_17:5092381-5093116(-) (11)	NA	Q11011	Puromycin-sensitive aminopeptidase	AT4G33090.1	aminopeptidase M1 	LOC_Os08g30810.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1799.1.A1_at	A	A1TS	POPTR_0014s01260	POPTR_0014s01260 (11)	scaffold_14:1233903-1234437(+) (11)	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g56050.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.18002.1.A1_at	A	A2TS	POPTR_0002s18300	POPTR_0002s18300 (11)//POPTR_0002s18280 (10)	scaffold_2:14255210-14255705(-) (10)//scaffold_2:14267890-14268249(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18003.1.S1_at	A	A1MS	POPTR_0004s24350	POPTR_0004s24350 (10)	scaffold_4:23024815-23025188(+) (10)	NA	NA	NA	AT4G19350.1	embryo defective 3006 	LOC_Os08g06520.2	expressed protein	Medtr8g089330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18005.2.A1_a_at	A	A3TS	POPTR_0009s09800	POPTR_0009s09800 (11)//POPTR_0009s09830 (11)//POPTR_0009s09820 (11)	scaffold_9:8574116-8574377(-) (11)//scaffold_9:8586886-8587147(-) (11)//scaffold_9:8595310-8595571(-) (11)	NA	Q9MB73	Limonoid UDP-glucosyltransferase	AT4G15480.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g09510.1	"limonoid UDP-glucosyltransferase, putative, expressed"	Medtr3g067110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18009.1.A1_s_at	A	A1TS	POPTR_0010s07410	POPTR_0010s07410 (11)	scaffold_10:8472129-8472445(-) (11)	NA	Q93Y39	DEAD-box ATP-dependent RNA helicase 13	AT3G16840.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g43140.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC146793_7.1	"Helicase, C-terminal; ; AC146793.7 35969-26139 F EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.18011.1.A1_s_at	A	A1TS	POPTR_0003s04560	POPTR_0003s04560 (11)	scaffold_3:5275532-5276016(-) (11)	NA	NA	NA	AT1G17620.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g39290.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g121250.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.18011.2.A1_at	A	A1TS	POPTR_0001s20790	POPTR_0001s20790 (10)	scaffold_1:18963465-18964003(-) (10)	NA	NA	NA	AT1G17620.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os05g11010.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g121250.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.18011.4.A1_a_at	A	A1TS	POPTR_0001s20790	POPTR_0001s20790 (11)	scaffold_1:18963532-18964054(-) (11)	NA	NA	NA	AT1G17620.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os05g11010.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g121250.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.1802.1.A1_at	A	A1TS	POPTR_0014s02700	POPTR_0014s02700 (11)	scaffold_14:2244944-2245399(+) (11)	NA	Q9C635	Heat stress transcription factor B-4	AT1G46264.1	heat shock transcription factor  B4 	LOC_Os07g44690.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr3g147650.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.1802.2.S1_at	A	A1TS	POPTR_0002s12640	POPTR_0002s12640 (9)	scaffold_2:9429668-9430129(+) (9)	NA	Q9C635	Heat stress transcription factor B-4	AT1G46264.1	heat shock transcription factor  B4 	LOC_Os07g44690.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr3g147650.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.18034.1.A1_at	A	A1TS	POPTR_0010s25670	POPTR_0010s25670 (11)	scaffold_10:21233848-21234633(+) (11)	NA	NA	NA	AT3G21200.1	proton gradient regulation 7 	LOC_Os08g15500.1	expressed protein	Medtr4g022840.1	FMN-binding split barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18039.1.A1_at	A	A1TS	POPTR_0018s13550	POPTR_0018s13550 (10)	scaffold_18:13844857-13845224(-) (10)	NA	P46573	"Protein kinase APK1B, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18053.1.A1_at	A	A1MS	POPTR_0009s03980	POPTR_0009s03980 (11)	scaffold_9:4558298-4558687(+) (11)	NA	Q9ZW06	Pumilio homolog 2	AT2G29190.2	pumilio 2 	LOC_Os01g62650.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr4g084270.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.18054.1.A1_at	A	A1TS	POPTR_0001s26000	POPTR_0001s26000 (11)	scaffold_1:25096429-25096883(-) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT1G34470.1	Protein of unknown function (DUF803) 	LOC_Os05g43790.1	"DUF803 domain containing, putative, expressed"	Medtr5g097050.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.18060.1.A1_at	A	A1TA	POPTR_0001s11680	POPTR_0001s11680 (11)	scaffold_1:9073467-9074003(+) (11)	NA	Q41001	Blue copper protein	AT5G07475.1	Cupredoxin superfamily protein 	LOC_Os04g46120.1	"plastocyanin-like domain containing protein, putative"	Medtr1g111900.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.18071.1.A1_at	A	A1TS	POPTR_0007s12990	POPTR_0007s12990 (11)	scaffold_7:13177998-13178405(-) (11)	NA	Q58E76	ATPase family AAA domain-containing protein 3-A	AT2G18330.1	AAA-type ATPase family protein 	LOC_Os02g47760.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g107260.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.18074.1.A1_at	A	A1TS	POPTR_0001s02260	POPTR_0001s02260 (11)	scaffold_1:1722054-1722101(+) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G17790.1	SNARE associated Golgi protein family 	LOC_Os02g46660.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18075.1.S1_at	A	A1TS	POPTR_0009s01720	POPTR_0009s01720 (10)	scaffold_9:2255112-2255526(+) (11)	NA	P38389	Protein transport protein Sec61 subunit beta	AT5G60460.1	"Preprotein translocase Sec, Sec61-beta subunit protein "	LOC_Os11g01300.1	"protein transport protein Sec61 subunit beta, putative, expressed"	Medtr2g110790.1	Sec61beta 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18084.1.A1_at	A	A1TS	POPTR_0017s03910	POPTR_0017s03910 (10)	scaffold_17:2919762-2920062(-) (10)	NA	P48979	Polygalacturonase	AT3G59850.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr4g114910.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.18088.1.A1_at	A	A1TS	POPTR_0017s11160	POPTR_0017s11160 (11)	scaffold_17:10829543-10829795(+) (11)	NA	Q54N38	Ubiquitin carboxyl-terminal hydrolase isozyme L5	AT1G65650.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	LOC_Os02g57630.2	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr8g105130.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	GO:0005622|intracellular
PtpAffx.18093.1.S1_at	A	A1TS	POPTR_0004s23270	POPTR_0004s23270 (11)	scaffold_4:22066353-22066881(+) (11)	NA	Q9LU46	DEAD-box ATP-dependent RNA helicase 35	AT5G51280.1	"DEAD-box protein abstrakt, putative "	LOC_Os02g05660.1	"DEAD-box ATP-dependent RNA helicase 35A, putative, expressed"	Medtr1g122060.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0008270|zinc ion binding||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.18095.1.A1_at	A	A1TS	POPTR_0010s21500	POPTR_0010s21500 (9)	scaffold_10:18758058-18758329(+) (9)	NA	NA	NA	AT3G12590.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g74310.1	expressed protein	Medtr7g025550.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18100.1.A1_s_at	A	A1TS	POPTR_0004s05450	POPTR_0004s05450 (11)	scaffold_4:4201526-4201863(-) (11)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g42820.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.18100.2.A1_a_at	A	A1TS	POPTR_0011s07480	POPTR_0011s07480 (11)	scaffold_11:8326328-8326439(+) (11)	NA	P04256	Heterogeneous nuclear ribonucleoprotein A1	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g42820.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.18100.5.A1_at	A	A1MS	POPTR_0004s05450	POPTR_0004s05450 (11)	scaffold_4:4202003-4202276(-) (11)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g42820.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.18101.1.S1_a_at	A	A1TS	POPTR_0002s00540	POPTR_0002s00540 (11)	scaffold_2:209226-209336(-) (11)	NA	Q8H0U8	DEAD-box ATP-dependent RNA helicase 42	AT1G20920.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g06344.3	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr2g007080.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.18117.1.S1_s_at	A	A1TS	POPTR_0002s11690	POPTR_0002s11690 (11)	scaffold_2:8692567-8692606(+) (11)	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	NA	NA	NA	NA	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.18117.2.S1_at	A	A1MS	POPTR_0002s11690	POPTR_0002s11690 (11)	scaffold_2:8692324-8692514(+) (11)	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	NA	NA	NA	NA	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.18119.1.A1_at	A	A1TS	POPTR_0002s05890	POPTR_0002s05890 (9)	scaffold_2:3884208-3884846(-) (9)	POPTR_0647s00230 (7)//POPTR_0005s22610 (7)	Q55C58	Vacuolar protein sorting-associated protein 16 homolog	AT2G38020.1	vacuoleless1 (VCL1) 	LOC_Os01g47650.1	"vacuolar protein sorting-associated protein 16, putative, expressed"	Medtr3g061350.1	"Vps16, N-terminal "	GO:0006886|intracellular protein transport	NA	GO:0005737|cytoplasm
PtpAffx.18122.1.S1_at	A	A1TS	POPTR_0018s07110	POPTR_0018s07110 (11)	scaffold_18:7309652-7310167(+) (11)	NA	NA	NA	AT3G42725.1	Putative membrane lipoprotein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18129.1.S1_at	A	A1TS	POPTR_0003s05960	POPTR_0003s05960 (9)	scaffold_3:7320053-7321246(+) (9)	NA	NA	NA	AT1G15420.1	"CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). "	LOC_Os01g46060.1	"NUC189 domain containing protein, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.18145.1.A1_at	A	A1TS	POPTR_0003s18700	POPTR_0003s18700 (11)	scaffold_3:17686624-17687269(+) (11)	NA	A5YVF1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	LOC_Os12g09580.1	"leafbladeless1, putative, expressed"	Medtr3g151680.1	"Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18160.1.A1_at	A	A1TA	POPTR_0005s15210	POPTR_0005s15210 (11)	scaffold_5:11976680-11977027(-) (11)	NA	P82353	Non-specific lipid-transfer protein 2	AT3G18280.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g47700.1	"LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g093780.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18160.2.S1_at	A	A1TS	POPTR_0005s15210	POPTR_0005s15210 (9)	scaffold_5:11976823-11977045(+) (9)	NA	P82353	Non-specific lipid-transfer protein 2	AT3G18280.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g47700.1	"LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g093780.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18162.1.S1_at	A	A1TS	POPTR_0014s16880	POPTR_0014s16880 (11)	scaffold_14:13017939-13020650(+) (11)	NA	P38166	Protein transport protein SFT2	AT4G26550.1	Got1/Sft2-like vescicle transport protein family 	LOC_Os06g19620.1	"SFT2, putative, expressed"	Medtr3g080130.1	SFT2-like 	GO:0016192|vesicle-mediated transport	NA	NA
PtpAffx.18163.1.S1_at	A	A1TS	POPTR_0018s00710	POPTR_0018s00710 (10)	scaffold_18:618682-619289(-) (10)	NA	Q9S7G7	Myb-related protein 3R-1	AT4G32730.2	Homeodomain-like protein 	LOC_Os01g12860.1	"MYB family transcription factor, putative, expressed"	AC225518_14.1	Homeodomain-like; AC225518.12 45180-39703 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18166.1.A1_s_at	A	A1TS	POPTR_0001s42640	POPTR_0001s42640 (11)	scaffold_1:42678113-42678403(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g068530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18170.1.S1_at	A	A1TS	POPTR_0003s11470	POPTR_0003s11470 (11)	scaffold_3:12262832-12263234(+) (11)	NA	NA	NA	AT3G60780.1	Protein of unknown function (DUF1442) 	LOC_Os02g25780.1	expressed protein	Medtr5g011970.1	Protein of unknown function DUF1442 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18170.2.S1_a_at	A	A1TS	POPTR_0003s11470	POPTR_0003s11470 (11)	scaffold_3:12262421-12262759(+) (11)	NA	NA	NA	AT3G60780.1	Protein of unknown function (DUF1442) 	LOC_Os02g25780.1	expressed protein	Medtr5g011970.1	Protein of unknown function DUF1442 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18175.2.A1_a_at	A	A1TS	POPTR_0016s08130	POPTR_0016s08130 (11)	scaffold_16:5982994-5983590(-) (11)	NA	Q6DF08	UDP-glucuronic acid decarboxylase 1	AT3G53520.1	UDP-glucuronic acid decarboxylase 1 	LOC_Os05g29990.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.18176.1.A1_at	A	A1TS	POPTR_0004s20680	POPTR_0004s20680 (10)	scaffold_4:20120014-20121819(-) (10)	NA	Q9ZVC7	Xylogen-like protein 11	AT3G43720.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g41030.1	"LTPL67 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g111400.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18179.1.S1_s_at	A	A3TS	POPTR_0016s02230	POPTR_0016s02260 (11)//POPTR_0016s02230 (11)//POPTR_0016s02220 (10)	scaffold_16:1072201-1078548(+) (11)//scaffold_16:1078331-1079783(+) (10)//scaffold_16:1091807-1096845(+) (11)//scaffold_16:1095663-1096036(+) (9)	POPTR_2486s00200 (7)	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22380.1	UDP-glucosyl transferase 85A3 	LOC_Os02g51930.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18180.1.A1_at	A	A1TS	POPTR_0013s11370	POPTR_0013s11370 (11)	scaffold_13:12047464-12048613(+) (11)	NA	P48769	Deoxycytidine kinase	AT1G72040.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g65350.1	"deoxynucleoside kinase family, putative, expressed"	Medtr3g012840.1	Deoxynucleoside kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0005524|ATP binding||GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.18190.1.S1_at	A	A1TS	POPTR_0010s20950	POPTR_0010s20950 (11)	scaffold_10:18396770-18397292(+) (11)	NA	Q940Z2	Actin-related protein 5	AT3G12380.1	actin-related protein 5 	LOC_Os03g50885.1	"actin, putative, expressed"	Medtr2g008170.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.18198.1.S1_at	A	A1TS	POPTR_0010s00720	POPTR_0010s00720 (11)	scaffold_10:420153-420587(+) (11)	NA	Q8RXW0	Uncharacterized protein At3g17611	AT3G17611.1	RHOMBOID-like protein 14 	LOC_Os01g18100.1	"OsRhmbd3 - Putative Rhomboid homologue, expressed"	AC235488_11.1	Rhomboid-like protein; UBA-like AC235488.1 47326-40593 E EGN_Mt090430 200	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular||GO:0016021|integral to membrane
PtpAffx.18200.1.A1_a_at	A	A1TS	POPTR_0001s28510	POPTR_0001s28510 (11)	scaffold_1:27278894-27279162(+) (11)	NA	O80871	Probable protein phosphatase 2C 25	AT2G30020.1	Protein phosphatase 2C family protein 	LOC_Os03g18150.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18201.1.A1_at	A	A1MS	POPTR_0005s16040	POPTR_0005s16040 (11)	scaffold_5:12690693-12690962(+) (11)	NA	Q9CA23	Ubiquitin-fold modifier 1	AT1G77710.1	"CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). "	LOC_Os01g73140.1	"ubiquitin-fold modifier 1 precursor, putative, expressed"	Medtr5g065330.1	Protein of unknown function UPF0185 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18206.1.A1_at	A	A1MS	POPTR_0010s08550	POPTR_0010s08550 (11)	scaffold_10:9469328-9469433(-) (11)	NA	Q570S7	Cellulose synthase-like protein G1	AT4G24010.1	cellulose synthase like G1 	LOC_Os09g30120.1	"CSLE1 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.18206.1.A1_s_at	A	A1TS	POPTR_0010s08550	POPTR_0010s08550 (11)	scaffold_10:9468930-9469339(-) (11)	NA	Q570S7	Cellulose synthase-like protein G1	AT4G24010.1	cellulose synthase like G1 	LOC_Os09g30120.1	"CSLE1 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.18207.1.A1_at	A	A1MS	POPTR_0001s29710	POPTR_0001s29710 (11)	scaffold_1:28353152-28353321(+) (11)	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	LOC_Os01g34780.2	"protein binding protein, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.18210.1.A1_at	A	A1TS	POPTR_0015s02120	POPTR_0015s02120 (11)	scaffold_15:1458423-1458469(-) (11)	NA	NA	NA	AT3G61700.2	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18211.1.A1_at	A	A1MS	POPTR_0009s05160	POPTR_0009s05160 (10)	scaffold_9:5317541-5318076(-) (11)	NA	NA	NA	AT5G58630.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr5g079440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18212.1.A1_at	A	A1MS	POPTR_0015s04090	POPTR_0015s04090 (11)	scaffold_15:4079016-4079449(-) (11)	NA	NA	NA	AT1G52870.2	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18222.1.A1_at	A	A1TS	POPTR_0006s04270	POPTR_0006s04270 (10)	scaffold_6:2925053-2925333(-) (10)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.18226.1.A1_a_at	A	A1TS	POPTR_0005s12070	POPTR_0005s12070 (11)	scaffold_5:8863926-8864214(-) (11)	NA	Q9FJZ9	Peroxidase 72	AT5G66390.1	Peroxidase superfamily protein 	LOC_Os01g15830.1	"peroxidase precursor, putative, expressed"	Medtr5g020980.1	"Haem peroxidase, plant/fungal/bacterial; TonB box, N-terminal "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.18227.1.A1_at	A	A1TS	POPTR_0015s02220	POPTR_0015s02220 (11)	scaffold_15:1563477-1563964(+) (11)	NA	Q9ZUB8	F-box protein SKIP22	AT1G23780.1	F-box family protein 	LOC_Os03g12940.1	"OsFBO13 - F-box and other domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18233.1.S1_a_at	A	A1TS	POPTR_0007s10630	POPTR_0007s10630 (11)	scaffold_7:10666169-10666780(+) (11)	NA	O48670	Protein RER1A	AT4G39220.1	Rer1 family protein 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr5g016490.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
PtpAffx.18234.1.A1_at	A	A1TS	POPTR_0002s16920	POPTR_0002s16920 (11)	scaffold_2:12663614-12664813(+) (11)	NA	Q6DHC3	Solute carrier family 25 member 40	AT2G46320.1	Mitochondrial substrate carrier family protein 	LOC_Os08g29720.2	"mitochondrial carrier protein, putative, expressed"	Medtr7g143660.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18236.1.S1_at	A	A1TS	POPTR_0004s23470	POPTR_0004s23470 (11)	scaffold_4:22190973-22191779(-) (11)	NA	NA	NA	AT1G09645.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g34680.2	expressed protein	Medtr4g033000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18238.1.S1_a_at	A	A1TS	POPTR_0010s11490	POPTR_0010s11490 (11)	scaffold_10:11730847-11731195(-) (11)	NA	Q9S7U5	Heat stress transcription factor A-8	AT1G67970.1	heat shock transcription factor  A8 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g156700.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.18241.1.A1_at	A	A1TS	POPTR_0013s06120	POPTR_0013s06120 (11)	scaffold_13:4540005-4540619(-) (11)	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g026270.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.18247.1.A1_at	A	A1TS	POPTR_0007s11270	POPTR_0007s11270 (11)	scaffold_7:11605185-11605571(+) (11)	NA	Q3U3D7	Transmembrane protein 131-like	AT5G66820.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g08740.1	expressed protein	Medtr5g017760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18249.1.A1_a_at	A	A1TS	POPTR_0014s15240	POPTR_0014s15240 (11)	scaffold_14:11320352-11320464(+) (11)	NA	P92980	"5'-adenylylsulfate reductase 3, chloroplastic"	AT4G21990.1	APS reductase 3 	LOC_Os07g32570.2	"OsAPRL1  adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016740|transferase activity	NA
PtpAffx.18251.1.A1_a_at	A	A1TS	POPTR_0006s23610	POPTR_0006s23610 (11)	scaffold_6:22327727-22328527(+) (11)	NA	Q40224	Guanine nucleotide-binding protein alpha-1 subunit	AT2G26300.1	G protein alpha subunit 1 	LOC_Os05g26890.1	"G-protein alpha subunit, putative, expressed"	Medtr1g019860.1	"Calcium-binding EF-hand; Plant G-protein, alpha subunit "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.18251.2.A1_a_at	A	A1TS	POPTR_0018s08460	POPTR_0018s08460 (11)	scaffold_18:9392104-9392503(-) (11)	NA	P49082	Guanine nucleotide-binding protein alpha-1 subunit	AT2G26300.1	G protein alpha subunit 1 	LOC_Os05g26890.1	"G-protein alpha subunit, putative, expressed"	Medtr1g019860.1	"Calcium-binding EF-hand; Plant G-protein, alpha subunit "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.18265.1.A1_at	A	A1TS	POPTR_0014s10160	POPTR_0014s10160 (11)	scaffold_14:7621216-7621675(+) (11)	NA	Q689G6	Two-component response regulator-like PRR95	AT5G24470.1	pseudo-response regulator 5 	LOC_Os09g36220.2	"response regulator receiver domain containing protein, expressed"	Medtr7g146130.1	Response regulator receiver; CCT 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.18276.1.A1_a_at	A	A1TS	POPTR_0001s40860	POPTR_0001s40860 (11)	scaffold_1:40456811-40457081(+) (11)	NA	Q9LDA7	Probable protein phosphatase 2C 39	AT3G15260.2	Protein phosphatase 2C family protein 	LOC_Os07g32380.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18277.1.A1_at	A	A1TS	POPTR_0008s17890	POPTR_0008s17890 (11)	scaffold_8:12022172-12022706(+) (11)	NA	NA	NA	AT5G14280.1	DNA-binding storekeeper protein-related 	LOC_Os05g23700.1	"DNA-binding storekeeper protein-related, putative, expressed"	Medtr4g136680.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.18293.1.S1_at	A	A1TS	POPTR_0013s05620	POPTR_0013s05620 (10)	scaffold_13:4021106-4021557(-) (10)	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT1G64760.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g57880.3	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr6g030630.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.18294.1.S1_at	A	A1TS	POPTR_0008s15150	POPTR_0008s15150 (11)	scaffold_8:10132663-10133157(-) (11)	NA	Q55CU8	Random slug protein 5	AT1G05370.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g11950.1	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr1g132520.1	"Cellular retinaldehyde-binding/triple function, C-terminal; Phosphatidylinositol transfer protein-like, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18295.1.A1_at	A	A1TS	POPTR_0003s03720	POPTR_0003s03720 (10)	scaffold_3:4400270-4400304(-) (10)	NA	Q8R116	Protein notum homolog	AT4G19410.1	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18295.2.A1_s_at	A	A1TS	POPTR_0010s06560	POPTR_0010s06560 (11)	scaffold_10:7885170-7885308(+) (11)	NA	P25858	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT3G04120.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.18295.3.A1_at	A	A1TS	POPTR_0001s33070	POPTR_0001s33070 (11)	scaffold_1:31297583-31298674(-) (11)	NA	NA	NA	AT5G14030.4	translocon-associated protein beta (TRAPB) family protein 	LOC_Os01g01307.1	"translocon-associated protein beta domain containing protein, expressed"	Medtr7g096580.1	Translocon-associated beta 	NA	NA	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.18295.5.S1_a_at	A	A1TS	POPTR_0010s06560	POPTR_0010s06560 (11)	scaffold_10:7885486-7885553(+) (11)	NA	P25858	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT3G04120.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.18295.5.S1_at	A	A1MS	POPTR_0010s06560	POPTR_0010s06560 (10)	scaffold_10:7885299-7885747(+) (10)	NA	P25858	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT3G04120.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.18302.1.A1_at	A	A1TA	POPTR_0019s03440	POPTR_0019s03440 (11)	scaffold_19:3509739-3510142(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016234|inclusion body
PtpAffx.18304.1.A1_at	A	A1MS	POPTR_0008s15840	POPTR_0008s15840 (11)	scaffold_8:10551202-10551504(+) (11)	NA	Q7RZD3	Serine/threonine-protein kinase ste-20	AT1G04210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g53250.1	expressed protein	Medtr2g017390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.18307.1.S1_at	A	A1MS	POPTR_0011s12740	POPTR_0011s12740 (9)	scaffold_11:15427378-15427864(-) (11)	NA	NA	NA	AT4G10265.1	Wound-responsive family protein 	LOC_Os04g54280.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr2g095470.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18308.2.S1_at	A	A1TS	POPTR_0004s16660	POPTR_0004s16660 (11)	scaffold_4:17061073-17061493(-) (11)	NA	O65685	BEL1-like homeodomain protein 6	AT4G34610.2	BEL1-like homeodomain 6 	LOC_Os12g43950.4	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.18309.1.A1_at	A	A1TS	POPTR_0005s22350	POPTR_0005s22350 (11)	scaffold_5:21298767-21299142(-) (11)	NA	Q9SJG9	Mitogen-activated protein kinase 20	AT2G42880.1	MAP kinase 20 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr3g119710.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18310.1.A1_at	A	A1TS	POPTR_0005s05760	POPTR_0005s05760 (11)	scaffold_5:3759088-3759263(-) (11)	NA	NA	NA	AT3G04650.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os12g40540.1	"FAD dependent oxidoreductase, putative, expressed"	Medtr2g077110.1	Amine oxidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18316.1.A1_at	A	A1TS	POPTR_0010s13620	POPTR_0010s13620 (11)	scaffold_10:13439733-13440079(+) (11)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	LOC_Os06g15370.1	"peptide transporter PTR2, putative, expressed"	Medtr5g068370.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.18329.1.S1_at	A	A1TS	POPTR_0010s17100	POPTR_0010s17100 (10)	scaffold_10:15837224-15837463(-) (10)	NA	Q75HC2	Protein argonaute 7	AT1G69440.1	Argonaute family protein 	LOC_Os03g33650.1	"AGO7, putative, expressed"	Medtr5g045600.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18330.1.S1_at	A	A1TS	POPTR_0001s39220	POPTR_0001s39220 (10)	scaffold_1:38424187-38426326(-) (10)	POPTR_0011s10490 (6)	Q9SYM4	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1"	AT1G78580.1	trehalose-6-phosphate synthase 	LOC_Os05g44210.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g136450.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.18332.1.S1_at	A	A1TS	POPTR_0013s04670	POPTR_0013s04670 (9)	scaffold_13:3209331-3209905(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18333.1.A1_at	A	A1TS	POPTR_0015s11590	POPTR_0015s11590 (11)	scaffold_15:12157430-12157795(+) (11)	NA	NA	NA	AT3G48860.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18334.1.A1_at	A	A1TS	POPTR_0001s01830	POPTR_0001s01830 (11)	scaffold_1:1322264-1322601(-) (11)	NA	Q96ST2	Protein IWS1 homolog	AT1G32130.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os01g05420.1	"IWS1 C-terminus family protein, putative, expressed"	Medtr5g028170.1	"IWS1, C-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.18334.2.S1_a_at	A	A2TS	POPTR_0001s01830	POPTR_0001s01830 (11)//POPTR_0003s09640 (11)	scaffold_1:1322844-1323505(-) (11)//scaffold_3:10921858-10922580(+) (11)	NA	Q96ST2	Protein IWS1 homolog	AT1G32130.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os01g05420.1	"IWS1 C-terminus family protein, putative, expressed"	Medtr5g028170.1	"IWS1, C-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.18334.2.S1_at	A	A1TS	POPTR_0003s09640	POPTR_0003s09640 (11)	scaffold_3:10921880-10923044(+) (11)	NA	Q96ST2	Protein IWS1 homolog	AT1G32130.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os01g05420.1	"IWS1 C-terminus family protein, putative, expressed"	Medtr5g028170.1	"IWS1, C-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.18340.1.S1_at	A	A1MS	POPTR_0002s10030	POPTR_0002s10030 (10)	scaffold_2:7207662-7208183(-) (10)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0030528|transcription regulator activity	NA
PtpAffx.18355.1.S1_at	A	A1TS	POPTR_0006s03370	POPTR_0006s03370 (11)	scaffold_6:2137050-2137654(-) (11)	NA	P25011	G2/mitotic-specific cyclin S13-6	AT5G06150.1	Cyclin family protein 	LOC_Os05g41390.1	"cyclin, putative, expressed"	Medtr7g106110.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.18357.1.A1_at	A	A1TS	POPTR_0004s10560	POPTR_0004s10560 (11)	scaffold_4:9094511-9095012(-) (11)	NA	NA	NA	AT1G67180.1	zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein 	LOC_Os08g31930.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr1g107030.1	"BRCT; Zinc finger, FYVE/PHD-type "	NA	NA	GO:0005622|intracellular
PtpAffx.18361.1.S1_at	A	A1TS	POPTR_0010s02340	POPTR_0010s02340 (11)	scaffold_10:2693467-2693956(+) (11)	NA	Q68W88	50S ribosomal protein L14	AT5G46160.2	Ribosomal protein L14p/L23e family protein 	LOC_Os12g42180.1	"ribosomal protein, putative, expressed"	Medtr5g104080.1	"Ribosomal protein L14, bacterial and organelle form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.18361.2.S1_a_at	A	A1TS	POPTR_0010s02340	POPTR_0010s02340 (11)	scaffold_10:2693044-2693427(+) (11)	NA	Q68W88	50S ribosomal protein L14	AT5G46160.2	Ribosomal protein L14p/L23e family protein 	LOC_Os12g42180.1	"ribosomal protein, putative, expressed"	Medtr5g104080.1	"Ribosomal protein L14, bacterial and organelle form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.18371.1.A1_s_at	A	A1TS	POPTR_0011s17130	POPTR_0011s17130 (11)	scaffold_11:18736330-18738018(+) (11)	NA	Q10137	Sec14 cytosolic factor	AT1G55690.3	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os08g25310.1	"phosphatidylinositol transfer, putative, expressed"	Medtr3g016810.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18382.1.S1_at	A	A1TS	POPTR_0008s13310	POPTR_0008s13310 (10)	scaffold_8:8742103-8742595(+) (10)	NA	NA	NA	AT5G17190.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g50210.1	"erwinia induced protein 2, putative, expressed"	Medtr4g157430.1	"Erwinia induced protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18389.1.S1_at	A	A1TS	POPTR_0011s11010	POPTR_0011s11010 (11)	scaffold_11:13707828-13709341(+) (11)	NA	B3DNN5	Anaphase-promoting complex subunit 6	AT1G78770.1	anaphase promoting complex 6 	LOC_Os03g13370.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g068500.1	"Cell division cycle protein 16 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18392.1.A1_at	A	A1TS	POPTR_0005s24390	POPTR_0005s24390 (11)	scaffold_5:22950009-22950336(-) (11)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT2G31280.1	conserved peptide upstream open reading frame 7 	LOC_Os01g64560.2	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18399.1.A1_at	A	A1TS	POPTR_0007s07350	POPTR_0007s07350 (11)	scaffold_7:5688860-5689391(-) (11)	NA	Q93W54	Protein-S-isoprenylcysteine O-methyltransferase B	AT5G08335.1	Isoprenylcysteine carboxyl methyltransferase (ICMT) family  	LOC_Os04g51380.1	"protein-S-isoprenylcysteine O-methyltransferase. tax, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0006481|C-terminal protein amino acid methylation||GO:0044260|cellular macromolecule metabolic process	GO:0004671|protein-S-isoprenylcysteine O-methyltransferase activity	GO:0016021|integral to membrane
PtpAffx.18403.1.A1_s_at	A	A1TS	POPTR_0005s21230	POPTR_0005s21230 (11)	scaffold_5:20343278-20343480(-) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G42140.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os04g58960.1	"regulator of chromosome condensation, putative, expressed"	Medtr1g125660.1	"Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18406.1.S1_at	A	A1TS	POPTR_0014s02780	POPTR_0014s02780 (11)	scaffold_14:2315031-2315463(-) (11)	NA	NA	NA	AT1G45207.2	Remorin family protein 	LOC_Os02g52810.1	"remorin C-terminal domain containing protein, putative, expressed"	Medtr1g024260.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1841.1.S1_at	A	A1TS	POPTR_0011s07640	POPTR_0011s07640 (10)	scaffold_11:8470197-8470628(-) (10)	NA	NA	NA	AT2G31090.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g11900.1	expressed protein	Medtr2g018970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18415.1.A1_at	A	A1TS	POPTR_0018s05420	POPTR_0018s05420 (11)	scaffold_18:4950671-4950725(-) (11)	NA	Q9S7U9	Mitogen-activated protein kinase kinase 2	AT4G29810.1	MAP kinase kinase 2 	LOC_Os06g05520.1	"OsMKK1 - putative MAPKK based on amino acid sequence homology, expressed"	Medtr6g005140.1	Tyrosine protein kinase; Nuclear transport factor 2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18427.1.S1_at	A	A1TS	POPTR_0007s10660	POPTR_0007s10660 (11)	scaffold_7:10684163-10684583(-) (11)	NA	NA	NA	AT5G67230.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g47340.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr5g016530.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
PtpAffx.18430.1.S1_s_at	A	A1TS	POPTR_0014s16830	POPTR_0014s16830 (11)	scaffold_14:12927914-12928235(-) (11)	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G04240.2	RING/U-box superfamily protein 	LOC_Os08g38460.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g106720.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18431.2.A1_at	A	A1MS	POPTR_0004s20020	POPTR_0004s20020 (10)	scaffold_4:19672850-19673118(+) (10)	NA	Q6V9I6	Histone deacetylase HDT1	AT3G44750.2	histone deacetylase 3 	LOC_Os05g51830.1	"ZOS5-12 - C2H2 zinc finger protein, expressed"	Medtr4g073420.1	"Histone deacetylase HDT1, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.18435.1.S1_at	A	A1TS	POPTR_0001s28430	POPTR_0001s28430 (11)	scaffold_1:27219303-27219374(-) (11)	NA	O80873	Uncharacterized protein At1g07170/At2g30000	AT2G30000.1	PHF5-like protein 	LOC_Os05g30410.1	"PHF5-like protein domain containing protein, expressed"	Medtr4g024080.1	Protein of unknown function UPF0123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18435.1.S1_s_at	A	A2TS	POPTR_0001s28430	POPTR_0001s28430 (11)//POPTR_0009s07650 (11)	scaffold_1:27219665-27219759(-) (11)//scaffold_9:7103936-7104030(-) (11)	POPTR_0008s02840 (8)	O80873	Uncharacterized protein At1g07170/At2g30000	AT2G30000.1	PHF5-like protein 	LOC_Os05g30410.1	"PHF5-like protein domain containing protein, expressed"	Medtr4g024080.1	Protein of unknown function UPF0123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18446.1.A1_at	A	A1TS	POPTR_0006s27130	POPTR_0006s27130 (11)	scaffold_6:25136359-25137019(-) (11)	NA	Q93WC4	Auxin-responsive protein IAA29	AT4G32280.1	indole-3-acetic acid inducible 29 	LOC_Os03g53150.1	"OsIAA13 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr3g137460.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.18452.1.A1_at	A	A1TS	POPTR_0003s10230	POPTR_0003s10230 (11)	scaffold_3:11303278-11305166(-) (11)	NA	Q94B60	"ATP-dependent Clp protease proteolytic subunit 4, chloroplastic"	AT5G45390.1	CLP protease P4 	LOC_Os10g43050.1	"OsClp11 - Putative Clp protease homologue, expressed"	Medtr5g027000.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.18461.1.A1_s_at	A	A1TS	POPTR_0010s12180	POPTR_0010s12180 (11)	scaffold_10:12242296-12242874(-) (11)	NA	P34893	10 kDa chaperonin	AT1G23100.1	GroES-like family protein 	LOC_Os07g44740.1	"chaperonin, putative, expressed"	AC225518_13.1	GroES-like AC225518.12 38278-37581 E EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.18461.2.S1_at	A	A1TS	POPTR_0008s12950	POPTR_0008s12950 (11)	scaffold_8:8440043-8440764(+) (11)	NA	P34893	10 kDa chaperonin	AT1G23100.1	GroES-like family protein 	LOC_Os07g44740.1	"chaperonin, putative, expressed"	AC225518_13.1	GroES-like AC225518.12 38278-37581 E EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.18462.1.S1_at	A	A1TS	POPTR_0017s13380	POPTR_0017s13380 (10)	scaffold_17:13556228-13558471(+) (10)	NA	NA	NA	AT5G15802.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g30092.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18471.1.A1_at	A	A1MS	POPTR_0008s18870	POPTR_0008s18870 (11)	scaffold_8:12883515-12883991(-) (11)	POPTR_0008s18790 (8)//POPTR_0008s18810 (6)	Q9LIP4	Cytochrome P450 71B36	AT3G26320.1	"cytochrome P450, family 71, subfamily B, polypeptide 36 "	LOC_Os03g63310.1	"cytochrome P450 71E1, putative, expressed"	Medtr1g028100.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.18484.1.A1_at	A	A1TS	POPTR_0004s21680	POPTR_0004s21680 (11)	scaffold_4:20735184-20735738(+) (11)	NA	A4SGN0	Homoserine kinase	AT2G17265.1	homoserine kinase 	LOC_Os02g58510.1	"GHMP kinases ATP-binding protein, putative"	Medtr5g106780.1	Homoserine kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.18489.1.A1_s_at	A	A1TS	POPTR_0015s06330	POPTR_0015s06330 (11)	scaffold_15:6996774-6997864(+) (11)	NA	Q0IU52	Aspartic proteinase Asp1	AT1G49050.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g49800.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr4g143400.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18501.1.A1_at	A	A1TS	POPTR_0018s05300	POPTR_0018s05300 (11)	scaffold_18:4827321-4827765(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18506.1.A1_at	A	A1TS	POPTR_0013s14200	POPTR_0013s14200 (9)	scaffold_13:14500887-14501404(-) (11)	NA	P53603	Formimidoyltransferase-cyclodeaminase	AT2G20830.2	transferases;folic acid binding 	LOC_Os06g03740.1	"folic acid binding protein, putative, expressed"	Medtr8g102530.1	Formiminotransferase 	GO:0008152|metabolic process	GO:0005542|folic acid binding||GO:0016740|transferase activity	NA
PtpAffx.18509.1.A1_at	A	A1TA	POPTR_0011s15650	POPTR_0011s15650 (11)	scaffold_11:17748522-17748909(-) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G00820.1	IQ-domain 17 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1852.1.S1_at	A	A1TS	POPTR_0001s35640	POPTR_0001s35640 (9)	scaffold_1:33972545-33973706(+) (9)	NA	NA	NA	AT5G40570.1	Surfeit locus protein 2 (SURF2) 	LOC_Os04g40430.2	"surfeit locus protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18522.1.A1_at	A	A1TA	POPTR_0005s04230	POPTR_0005s04230 (10)	scaffold_5:2843299-2843581(-) (10)	NA	NA	NA	AT5G27330.1	Prefoldin chaperone subunit family protein 	NA	NA	Medtr1g098770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18523.1.A1_at	A	A1TS	POPTR_0005s26670	POPTR_0005s26670 (11)	scaffold_5:24591967-24592403(-) (11)	NA	Q9LN22	"Pentatricopeptide repeat-containing protein At1g20300, mitochondrial"	AT1G20300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os09g37070.1	"pentatricopeptide, putative, expressed"	Medtr3g157290.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18526.1.A1_at	A	A1MS	POPTR_0016s05200	POPTR_0016s05200 (10)	scaffold_16:3158684-3159185(+) (10)	NA	NA	NA	AT2G42320.2	nucleolar protein gar2-related 	LOC_Os09g31230.2	expressed protein	Medtr7g111110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18526.2.S1_at	A	A1MS	POPTR_0016s05200	POPTR_0016s05200 (11)	scaffold_16:3157774-3158191(+) (11)	NA	NA	NA	AT2G42320.2	nucleolar protein gar2-related 	LOC_Os09g31230.2	expressed protein	Medtr7g111110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18527.1.A1_at	A	A3TS	POPTR_0007s01310	POPTR_0007s01310 (11)//POPTR_0007s01270 (10)//POPTR_0007s01290 (10)	scaffold_7:696700-701811(+) (11)//scaffold_7:701309-713546(+) (11)//scaffold_7:705915-713908(+) (10)	POPTR_0007s01300 (6)//POPTR_0007s01260 (6)	P59910	DnaJ homolog subfamily B member 13	AT2G20560.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	Medtr4g108870.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	NA
PtpAffx.18530.1.A1_at	A	A1TS	POPTR_0008s00840	POPTR_0008s00840 (11)	scaffold_8:377763-378258(+) (11)	NA	Q9LHP1	60S ribosomal protein L7-4	AT3G13580.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.18531.1.A1_at	A	A1TS	POPTR_0003s02530	POPTR_0003s02530 (11)	scaffold_3:2618963-2622187(-) (11)	NA	NA	NA	AT1G15290.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18538.2.S1_s_at	A	A1TS	POPTR_0007s13600	POPTR_0007s13600 (11)	scaffold_7:13631262-13631309(+) (11)	NA	NA	NA	AT3G51050.1	FG-GAP repeat-containing protein 	LOC_Os02g01070.1	"FG-GAP repeat-containing protein, putative, expressed"	Medtr5g021050.1	FG-GAP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18541.1.A1_at	A	A1TS	POPTR_0009s06310	POPTR_0009s06310 (10)	scaffold_9:6095264-6095594(-) (10)	NA	Q9FLX9	Notchless protein homolog	AT5G52820.1	"WD-40 repeat family protein / notchless protein, putative "	LOC_Os11g38170.2	"notchless protein, putative, expressed"	Medtr8g138930.1	"Protein will die slowly, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18543.1.S1_at	A	A1TS	POPTR_0007s09950	POPTR_0007s09950 (11)	scaffold_7:9507363-9509144(-) (11)	NA	Q08466	Casein kinase II subunit alpha-2	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18543.2.S1_at	A	A1MS	POPTR_0005s18960	POPTR_0005s18960 (10)	scaffold_5:17457863-17458078(+) (10)	NA	P28523	Casein kinase II subunit alpha	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18550.1.S1_at	A	A1TS	POPTR_0015s08130	POPTR_0015s08130 (11)	scaffold_15:9391888-9392433(-) (11)	NA	Q9SB04	Two-component response regulator ARR5	AT3G48100.1	response regulator 5 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g124910.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.1856.1.S1_x_at	A	A1TS	POPTR_0013s01810	POPTR_0013s01810 (11)	scaffold_13:1038196-1038706(-) (11)	NA	NA	NA	AT4G15800.1	ralf-like 33 	LOC_Os12g35670.1	"RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed"	Medtr7g138890.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18563.1.S1_at	A	A1TS	POPTR_0006s29030	POPTR_0006s29030 (11)	scaffold_6:26519230-26520279(-) (11)	NA	NA	NA	AT4G31410.2	Protein of unknown function (DUF1644) 	LOC_Os06g47860.1	expressed protein	Medtr7g065090.2	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18563.3.A1_a_at	A	A1TS	POPTR_0018s03660	POPTR_0018s03660 (11)	scaffold_18:3126305-3127354(+) (11)	NA	NA	NA	AT4G31410.2	Protein of unknown function (DUF1644) 	LOC_Os06g47860.1	expressed protein	AC233560_2.1	Protein of unknown function DUF1644 AC233560.2 3733-2305 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18569.1.A1_at	A	A1TS	POPTR_0005s10830	POPTR_0005s10830 (11)	scaffold_5:7801296-7801332(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G35780.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18572.1.A1_at	A	A1TS	POPTR_0001s06140	POPTR_0001s06140 (10)	scaffold_1:4756142-4756711(+) (10)	NA	NA	NA	AT1G34570.1	"Essential protein Yae1, N-terminal "	LOC_Os01g72200.1	expressed protein	Medtr4g096490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18573.1.S1_at	A	A1TS	POPTR_0012s01110	POPTR_0012s01110 (9)	scaffold_12:772457-772867(+) (9)	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT5G65770.3	little nuclei4 	LOC_Os01g56140.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18575.1.S1_s_at	A	A1TS	POPTR_0014s17720	POPTR_0014s17720 (9)	scaffold_14:13977054-13977982(-) (11)	NA	O23051	Ent-kaurenoic acid oxidase 1	AT1G05160.1	"cytochrome P450, family 88, subfamily A, polypeptide 3 "	LOC_Os06g02019.1	"cytochrome P450, putative, expressed"	Medtr5g014420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.18585.1.A1_at	A	A1TS	POPTR_0008s08475	POPTR_0008s08475 (11)	scaffold_8:5256514-5257013(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18587.1.A1_a_at	A	A1TS	POPTR_0001s01190	POPTR_0001s01190 (11)	scaffold_1:934051-934646(-) (11)	NA	P16157	Ankyrin-1	AT5G61230.1	Ankyrin repeat family protein 	LOC_Os02g01245.1	hypothetical protein	Medtr5g026690.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18592.1.A1_at	A	A1TS	POPTR_0005s14830	POPTR_0005s14830 (11)	scaffold_5:11754806-11754903(+) (11)	NA	NA	NA	AT5G38060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g094150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18592.1.A1_s_at	A	A1TS	POPTR_0005s14830	POPTR_0005s14830 (11)	scaffold_5:11754468-11754642(+) (11)	NA	NA	NA	AT5G38060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g094150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18592.2.A1_at	A	A1MS	POPTR_0005s14830	POPTR_0005s14830 (11)	scaffold_5:11754108-11754417(+) (11)	NA	NA	NA	AT5G38060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g094150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18595.1.S1_a_at	A	A2TS	POPTR_0008s03750	POPTR_0008s03750 (11)//POPTR_0010s23170 (11)	scaffold_10:19816234-19816428(+) (11)//scaffold_8:2025627-2025821(-) (11)	NA	Q9SMB8	Tyramine N-feruloyltransferase 4/11	AT2G39020.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g05710.1	"acetyltransferase, GNAT family, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.18595.1.S1_at	A	A1TS	POPTR_0010s23170	POPTR_0010s23170 (11)	scaffold_10:19816190-19816639(+) (11)	NA	Q9SMB8	Tyramine N-feruloyltransferase 4/11	AT2G39020.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g05710.1	"acetyltransferase, GNAT family, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.18595.2.A1_at	A	A1TS	POPTR_0008s03750	POPTR_0008s03750 (11)	scaffold_8:2025481-2025976(-) (11)	NA	Q9SMB8	Tyramine N-feruloyltransferase 4/11	AT2G39020.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g05710.1	"acetyltransferase, GNAT family, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.18597.1.A1_at	A	A1TS	POPTR_0010s17850	POPTR_0010s17850 (11)	scaffold_10:16298056-16300065(-) (11)	NA	NA	NA	AT1G56180.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 436 Blast hits to 436 proteins in 83 species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). 	LOC_Os02g07250.1	"peptidase, cysteine peptidase active site, putative, expressed"	Medtr2g077520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18598.1.S1_at	A	A1TS	POPTR_0005s22820	POPTR_0005s22820 (11)	scaffold_5:21713322-21715506(+) (11)	NA	Q28D01	WD repeat-containing protein 26	AT5G08560.2	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.186.1.S1_at	A	A1TS	POPTR_0009s03720	POPTR_0009s03720 (11)	scaffold_9:4318073-4318189(-) (11)	NA	Q6GMF8	Rhomboid family member 1	AT2G29050.1	RHOMBOID-like 1 	LOC_Os11g47840.1	"OsRhmbd18 - Putative Rhomboid homologue, expressed"	Medtr2g116690.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.18600.1.A1_at	A	A1TS	POPTR_0008s05800	POPTR_0008s05800 (11)	scaffold_8:3381670-3382103(+) (11)	NA	NA	NA	AT2G39705.1	ROTUNDIFOLIA like 8 	LOC_Os01g62605.1	conserved hypothetical protein	Medtr5g087640.1	DVL 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18601.1.A1_at	A	A1TS	POPTR_0001s24090	POPTR_0001s24090 (11)	scaffold_1:23478881-23480002(-) (11)	NA	Q9LX73	E3 UFM1-protein ligase 1 homolog	AT3G46220.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611); Has 559 Blast hits to 533 proteins in 154 species: Archae - 3; Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50; Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink). 	LOC_Os05g02650.1	expressed protein	Medtr4g079360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18604.1.S1_at	A	A1TS	POPTR_0012s03530	POPTR_0012s03530 (11)	scaffold_12:2768119-2768621(-) (11)	NA	Q6R0H1	Protein LHY	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18609.1.A1_at	A	A1TS	POPTR_0005s00370	POPTR_0005s00370 (11)	scaffold_5:115047-115573(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18611.1.A1_a_at	A	A1TS	POPTR_0007s09340	POPTR_0007s09340 (11)	scaffold_7:8733973-8734478(+) (11)	POPTR_0005s10680 (8)	Q7XA86	Probable S-acyltransferase At3g51390	AT3G51390.1	DHHC-type zinc finger family protein 	LOC_Os04g47410.5	"DHHC zinc finger domain containing protein, expressed"	Medtr5g023180.1	"Zinc finger, DHHC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18614.1.S1_s_at	A	A1TS	POPTR_0002s22340	POPTR_0002s22340 (11)	scaffold_2:19055054-19055794(+) (11)	NA	NA	NA	AT4G25330.1	unknown protein; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g32100.1	conserved hypothetical protein	Medtr3g106610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18619.1.A1_at	A	A1MA	POPTR_0019s10870	POPTR_0019s10870 (9)	scaffold_19:12363743-12364116(+) (9)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65100.1	"peptide transporter, putative, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.18627.1.A1_at	A	A1TS	POPTR_0010s01800	POPTR_0010s01800 (11)	scaffold_10:1972801-1973309(+) (11)	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.18630.1.A1_a_at	A	A1MS	POPTR_0015s09780	POPTR_0015s09780 (11)	scaffold_15:10904196-10904309(+) (11)//scaffold_15:10904346-10904459(+) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os01g68060.1	"copine, putative, expressed"	Medtr6g022780.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18630.1.A1_at	A	A1MS	POPTR_0015s09780	POPTR_0015s09780 (11)	scaffold_15:10903956-10904475(+) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os01g68060.1	"copine, putative, expressed"	Medtr6g022780.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18632.1.A1_at	A	A1TS	POPTR_0001s20050	POPTR_0001s20050 (11)	scaffold_1:17697556-17698102(+) (11)	NA	NA	NA	AT5G11730.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g52120.1	"DNA binding protein, putative, expressed"	Medtr2g005200.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.18635.1.S1_at	A	A1TS	POPTR_0003s20420	POPTR_0003s20420 (11)	scaffold_3:18929577-18930128(+) (11)	NA	Q2RYF4	Cytochrome c-type biogenesis protein CcmE	AT3G51790.1	transmembrane protein G1P-related 1 	LOC_Os10g39870.1	"ATG1, putative, expressed"	Medtr4g087270.1	"CcmE/CycJ protein; Nucleic acid-binding, OB-fold, subgroup "	GO:0017003|protein-heme linkage||GO:0017004|cytochrome complex assembly||GO:0044260|cellular macromolecule metabolic process	NA	GO:0005886|plasma membrane
PtpAffx.18637.1.A1_at	A	A1TS	POPTR_0008s21040	POPTR_0008s21040 (10)	scaffold_8:15102109-15102481(-) (10)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18640.1.A1_at	A	A1TS	POPTR_0008s14940	POPTR_0008s14940 (9)	scaffold_8:9955034-9955066(-) (9)	NA	P46293	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.18640.1.A1_s_at	A	A2TS	POPTR_0008s14940	POPTR_0008s14940 (9)//POPTR_0010s10140 (9)	scaffold_10:10710825-10710975(+) (9)//scaffold_8:9955234-9955384(-) (9)	NA	P46293	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.1865.1.S1_at	A	A1TS	POPTR_0012s02280	POPTR_0012s02280 (10)	scaffold_12:1894371-1896181(-) (10)	NA	NA	NA	AT4G22000.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g02410.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18652.1.A1_at	A	A1TS	POPTR_0012s03160	POPTR_0012s03160 (11)	scaffold_12:2515144-2515636(+) (11)	NA	P09379	GTPase-activating protein GYP7	AT3G49350.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.18657.1.S1_at	A	A1TS	POPTR_0007s13640	POPTR_0007s13640 (11)	scaffold_7:13671061-13671539(-) (11)	NA	NA	NA	AT5G17280.1	"CONTAINS InterPro DOMAIN/s: Oxidoreductase-like, N-terminal (InterPro:IPR019180); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18668.1.A1_at	A	A1TS	POPTR_0009s01860	POPTR_0009s01860 (11)	scaffold_9:2348193-2348779(+) (11)	NA	Q8L7S3	Zinc finger CCCH domain-containing protein 24	AT2G28450.1	zinc finger (CCCH-type) family protein 	LOC_Os04g01480.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr4g081610.1	RNA-binding region RNP-1 (RNA recognition motif); Methyltransferase small; (Uracil-5)-methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18668.2.A1_at	A	A1MS	POPTR_0009s01860	POPTR_0009s01860 (11)	scaffold_9:2345887-2346311(+) (11)	NA	Q8L7S3	Zinc finger CCCH domain-containing protein 24	AT2G28450.1	zinc finger (CCCH-type) family protein 	LOC_Os04g01480.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr4g081610.1	RNA-binding region RNP-1 (RNA recognition motif); Methyltransferase small; (Uracil-5)-methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18678.1.A1_s_at	A	A1TS	POPTR_0002s07910	POPTR_0002s07910 (11)	scaffold_2:5442019-5442523(+) (11)	NA	NA	NA	AT1G21600.2	plastid transcriptionally active 6 	LOC_Os11g01890.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18683.1.A1_at	A	A1TS	POPTR_0001s25140	POPTR_0001s25140 (10)	scaffold_1:24352896-24354242(+) (10)	NA	Q5ZMJ9	Serine/arginine repetitive matrix protein 1	AT2G29210.1	splicing factor PWI domain-containing protein 	LOC_Os03g16369.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g084280.1	Splicing factor PWI 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	NA
PtpAffx.18683.1.A1_s_at	A	A1MS	POPTR_0001s25140	POPTR_0001s25140 (11)	scaffold_1:24352722-24352842(+) (11)	POPTR_0009s04160 (6)	Q5ZMJ9	Serine/arginine repetitive matrix protein 1	AT2G29210.1	splicing factor PWI domain-containing protein 	LOC_Os03g16369.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g084280.1	Splicing factor PWI 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	NA
PtpAffx.18687.1.A1_at	A	A1TS	POPTR_0001s08550	POPTR_0001s08550 (11)	scaffold_1:6517173-6517792(+) (11)	NA	Q9FPQ8	Homeobox protein knotted-1-like 7	AT1G62990.1	KNOTTED-like homeobox of Arabidopsis thaliana 7 	LOC_Os03g03164.2	"homeobox protein knotted-1, putative, expressed"	Medtr5g011210.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.18689.1.A1_a_at	A	A2TS	POPTR_0006s10180	POPTR_0006s10180 (11)//POPTR_0016s12420 (11)	scaffold_16:11785863-11786669(+) (11)//scaffold_6:7548264-7549131(+) (11)	NA	O81488	PHD finger protein At5g26210	AT5G05610.2	alfin-like 1 	LOC_Os05g07040.1	"PHD finger protein, putative, expressed"	AC235756_22.1	"Zinc finger, FYVE/PHD-type AC235756.1 164740-161152 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18692.1.A1_at	A	A1TS	POPTR_0004s14920	POPTR_0004s14920 (10)	scaffold_4:15570723-15571465(-) (11)	NA	NA	NA	AT2G15695.1	"Protein of unknown function DUF829, transmembrane 53 "	LOC_Os11g40070.1	expressed protein	Medtr4g129420.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18698.1.A1_at	A	A1TS	POPTR_0009s04930	POPTR_0009s04930 (11)	scaffold_9:5163771-5164092(+) (11)	NA	O82380	"Pentatricopeptide repeat-containing protein At2g29760, chloroplastic"	AT2G29760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g08120.1	"pentatricopeptide, putative, expressed"	Medtr4g005700.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18705.2.A1_a_at	A	A1TS	POPTR_0015s03360	POPTR_0015s03360 (11)	scaffold_15:2865650-2866230(-) (11)	NA	Q84V83	Leucoanthocyanidin reductase	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g15360.1	nmrA-like family domain containing protein	Medtr1g118020.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.18716.1.S1_at	A	A1TS	POPTR_0002s06310	POPTR_0002s06310 (11)	scaffold_2:4212325-4212740(+) (11)	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.18716.2.A1_at	A	A1TS	POPTR_0005s22070	POPTR_0005s22070 (10)	scaffold_5:21070793-21071197(-) (10)	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.18716.3.S1_a_at	A	A1TS	POPTR_0002s06310	POPTR_0002s06310 (11)	scaffold_2:4208947-4209016(+) (11)	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.18719.1.S1_at	A	A1TS	POPTR_0017s00870	POPTR_0017s00870 (11)	scaffold_17:647382-647648(-) (11)	NA	Q2KIK0	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18719.2.A1_at	A	A1TS	POPTR_0004s06940	POPTR_0004s06940 (11)	scaffold_4:5764461-5765109(-) (11)	NA	Q9CX34	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18731.1.A1_at	A	A1MS	POPTR_0010s10710	POPTR_0010s10710 (11)	scaffold_10:11162383-11162751(-) (11)	NA	NA	NA	AT1G60670.2	Protein of unknown function (DUF3755) 	LOC_Os02g42020.2	expressed protein	Medtr3g025420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18732.1.A1_at	A	A1TS	POPTR_1414s00200	POPTR_1414s00200 (11)	scaffold_12:4707908-4708319(+) (11)//scaffold_1414:1758-2169(-) (11)	POPTR_0012s05190 (7)	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os01g03690.1	"TKL_IRAK_DUF26-lg.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr6g027990.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18742.1.A1_at	A	A1TS	POPTR_0008s00850	POPTR_0008s00850 (11)	scaffold_8:386349-386727(+) (11)	NA	Q9LU41	"Calcium-transporting ATPase 9, plasma membrane-type"	AT3G21180.1	autoinhibited Ca(2+)-ATPase 9 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.18745.1.S1_s_at	A	A1TS	POPTR_0003s12430	POPTR_0003s12430 (11)	scaffold_3:13001378-13002666(-) (11)	NA	Q9JZ44	30S ribosomal protein S1	AT1G12800.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os02g02390.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g104300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.18750.1.A1_s_at	A	A1TS	POPTR_0001s43340	POPTR_0001s43340 (11)	scaffold_1:43386985-43387397(+) (11)	NA	O04893	Alpha-glucosidase	AT5G11720.1	Glycosyl hydrolases family 31  protein 	LOC_Os06g46284.2	"glycosyl hydrolase, family 31, putative, expressed"	AC229699_4.1	"Glycoside hydrolase, family 31 AC229699.6 9352-14882 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.18752.1.A1_at	A	A1TS	POPTR_0012s04130	POPTR_0012s04130 (10)	scaffold_12:3337019-3337511(-) (10)	NA	NA	NA	AT5G05800.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g10550.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g093090.1	"PIF-like orf1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18754.1.A1_at	A	A1TS	POPTR_0004s15400	POPTR_0004s15400 (11)	scaffold_4:16041715-16042032(+) (11)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	LOC_Os11g09160.1	"B3 DNA binding domain containing protein, expressed"	Medtr4g092810.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.18756.1.S1_a_at	A	A3TS	POPTR_0012s01760	POPTR_0012s01760 (11)//POPTR_0012s01750 (10)//POPTR_0197s00210 (9)	scaffold_12:1331558-1338725(+) (11)//scaffold_12:1338535-1338671(+) (10)//scaffold_12:1351328-1351464(+) (10)//scaffold_12:1356075-1356211(+) (10)//scaffold_197:7218-7352(-) (9)//scaffold_197:35213-35403(-) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr4g098520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18760.1.S1_at	A	A1TS	POPTR_0017s02490	POPTR_0017s02490 (11)	scaffold_17:1804810-1805254(+) (11)	NA	Q39263	Zinc finger protein 4	AT1G66140.1	zinc finger protein 4 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr5g085190.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.18767.1.A1_at	A	A1TS	POPTR_0010s08980	POPTR_0010s08980 (11)	scaffold_10:9755519-9756005(+) (11)	NA	Q9LM76	U-box domain-containing protein 44	AT1G20780.1	senescence-associated E3 ubiquitin ligase 1 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.18774.1.S1_a_at	A	A1TS	POPTR_0001s06910	POPTR_0001s06910 (11)	scaffold_1:5282131-5282480(+) (11)	NA	NA	NA	AT5G06980.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12320.1). 	NA	NA	Medtr8g044020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18779.1.A1_at	A	A1TS	POPTR_0004s17640	POPTR_0004s17640 (11)	scaffold_4:17757649-17758258(+) (11)	NA	NA	NA	AT2G16630.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os02g01190.2	"POEI25 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr3g163310.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18784.1.A1_at	A	A1TS	POPTR_0008s23110	POPTR_0008s23110 (11)	scaffold_8:18365638-18366127(-) (11)	NA	O50001	Major allergen Pru ar 1	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.18790.1.S1_at	A	A1TS	POPTR_0002s15600	POPTR_0002s15600 (11)	scaffold_2:11641920-11642391(-) (11)	NA	O04603	"50S ribosomal protein L5, chloroplastic"	AT4G01310.1	Ribosomal L5P family protein 	LOC_Os03g03360.1	"ribosomal protein L5, putative, expressed"	Medtr7g088500.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.18797.1.A1_at	A	A1MS	POPTR_0009s15340	POPTR_0009s15340 (11)	scaffold_9:11894489-11894532(+) (11)	NA	Q058N4	"Magnesium transporter MRS2-11, chloroplastic"	AT5G22830.1	magnesium (Mg) transporter 10 	LOC_Os03g48000.1	"CorA-like magnesium transporter protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18808.1.A1_at	A	A1TS	POPTR_0008s06380	POPTR_0008s06380 (10)	scaffold_8:3789703-3790207(+) (11)	NA	Q6ICL7	Solute carrier family 35 member E4	AT3G11320.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr3g092950.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.18809.1.A1_a_at	A	A2TS	POPTR_0005s10030	POPTR_0007s08270 (11)//POPTR_0005s10030 (11)	scaffold_5:7119746-7120467(+) (11)//scaffold_7:6861197-6861913(+) (11)	NA	NA	NA	AT1G16520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os03g45760.1	expressed protein	Medtr8g139920.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18809.3.A1_a_at	A	A1TS	POPTR_0007s08270	POPTR_0007s08270 (11)	scaffold_7:6862294-6862517(+) (11)	NA	NA	NA	AT1G16520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os03g45760.1	expressed protein	Medtr8g139920.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18809.3.A1_at	A	A1MS	POPTR_0007s08270	POPTR_0007s08270 (11)	scaffold_7:6862067-6862308(+) (11)	NA	NA	NA	AT1G16520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os03g45760.1	expressed protein	Medtr8g139920.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18811.1.A1_at	A	A1TS	POPTR_0683s00200	POPTR_0683s00200 (11)	scaffold_683:3617-3685(-) (11)	NA	A6LL96	5'-nucleotidase surE	AT4G14930.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os07g10460.2	"5-nucleotidase surE, putative, expressed"	Medtr1g132450.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.18812.1.A1_at	A	A1TS	POPTR_0003s21530	POPTR_0003s21530 (11)	scaffold_3:19651555-19651733(+) (11)	NA	Q6QNM1	Casein kinase I	AT3G13670.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g005760.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18817.1.A1_at	A	A1TS	POPTR_0004s04580	POPTR_0004s04580 (11)	scaffold_4:3309047-3309564(+) (11)	NA	NA	NA	AT4G21020.1	Late embryogenesis abundant protein (LEA) family protein 	LOC_Os04g52110.1	"late embryogenesis abundant protein, group 3, putative, expressed"	Medtr2g017540.1	"late embryogenesis abundant protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18823.1.S1_s_at	A	A1TS	POPTR_0001s10520	POPTR_0001s10520 (11)	scaffold_1:8161394-8161872(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18825.1.A1_x_at	A	A1TS	POPTR_0017s13530	POPTR_0017s13530 (10)	scaffold_17:13650774-13651733(+) (10)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18825.3.A1_at	A	A1TS	POPTR_0001s28000	POPTR_0001s28000 (11)	scaffold_1:26814245-26814540(-) (11)	NA	Q9FMP4	Pre-mRNA branch site p14-like protein	AT5G12190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g59710.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g096400.1	hypothetical protein 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.18825.5.A1_at	A	A1MS	POPTR_0004s11250	POPTR_0004s11250 (11)	scaffold_4:9871318-9871824(-) (11)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18825.6.A1_a_at	A	A2TS	POPTR_0001s28000	POPTR_0001s28000 (11)//POPTR_0009s07180 (11)	scaffold_1:26814773-26814817(-) (11)//scaffold_9:6773451-6773495(-) (11)	NA	Q9FMP4	Pre-mRNA branch site p14-like protein	AT5G12190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g59710.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g096400.1	hypothetical protein 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.18825.6.A1_at	A	A1TS	POPTR_0009s07180	POPTR_0009s07180 (11)	scaffold_9:6773016-6773542(-) (11)	NA	Q9FMP4	Pre-mRNA branch site p14-like protein	AT5G12190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g59710.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g096400.1	hypothetical protein 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.18829.1.A1_at	A	A1TS	POPTR_0014s15170	POPTR_0014s15170 (11)	scaffold_14:11262681-11262926(-) (11)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.18830.1.S1_at	A	A1TS	POPTR_0006s29170	POPTR_0006s29170 (11)	scaffold_6:26629145-26630292(+) (11)	NA	NA	NA	AT4G31340.1	myosin heavy chain-related 	LOC_Os08g40790.2	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18831.1.A1_at	A	A1TS	POPTR_0007s09550	POPTR_0007s09550 (11)	scaffold_7:9015306-9015390(+) (11)	NA	Q80YV3	Transformation/transcription domain-associated protein	AT2G17930.1	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain 	LOC_Os07g45070.1	"FAT domain-containing protein, putative, expressed"	Medtr5g021910.1	"PIK-related kinase, FATC "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.18846.1.A1_at	A	A1TS	POPTR_0010s15830	POPTR_0010s15830 (11)	scaffold_10:14942888-14943428(+) (11)	NA	NA	NA	AT1G47970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 93717 Blast hits to 40765 proteins in 1891 species: Archae - 1046; Bacteria - 16276; Metazoa - 26677; Fungi - 16127; Plants - 6028; Viruses - 1519; Other Eukaryotes - 26044 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1885.1.A1_at	A	A1TS	POPTR_0015s01970	POPTR_0015s01970 (11)	scaffold_15:1371521-1371687(+) (11)	NA	NA	NA	AT5G67490.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g06330.1	expressed protein	Medtr3g132910.1	Protein of unknown function DUF1674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1885.1.A1_s_at	A	A1TS	POPTR_0015s01970	POPTR_0015s01970 (11)	scaffold_15:1371133-1371487(+) (11)	NA	NA	NA	AT5G67490.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g06330.1	expressed protein	Medtr3g132910.1	Protein of unknown function DUF1674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18850.1.A1_at	A	A1TS	POPTR_0009s02470	POPTR_0009s02470 (10)	scaffold_9:3229543-3230075(-) (11)	NA	NA	NA	AT3G44220.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os12g06260.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g107350.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.18860.1.S1_at	A	A1TS	POPTR_0003s09090	POPTR_0003s09090 (10)	scaffold_3:10409142-10409453(-) (10)	NA	Q39204	Transcription factor MYC2	AT1G32640.1	Basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.18860.2.S1_at	A	A1TS	POPTR_0001s02450	POPTR_0001s02450 (11)	scaffold_1:1903276-1903635(+) (11)	NA	Q39204	Transcription factor MYC2	AT1G32640.1	Basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.18870.1.S1_at	A	A1TS	POPTR_0003s18860	POPTR_0003s18860 (11)	scaffold_3:17770593-17771197(+) (11)	NA	NA	NA	AT3G54360.1	zinc ion binding 	LOC_Os01g01420.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18871.1.S1_at	A	A1TS	POPTR_0006s24420	POPTR_0006s24420 (10)	scaffold_6:23034518-23036338(+) (11)	NA	O80983	"ATP-dependent zinc metalloprotease FTSH 4, mitochondrial"	AT2G26140.1	FTSH protease 4 	LOC_Os01g39260.1	"OsFtsH5  FtsH protease, homologue of AtFtsH4, expressed"	Medtr3g139920.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.18875.1.A1_at	A	A1MS	POPTR_0010s12360	POPTR_0010s12360 (11)	scaffold_10:12385909-12386052(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18878.1.S1_at	A	A1TS	POPTR_0008s04430	POPTR_0008s04430 (11)	scaffold_8:2492728-2493182(-) (11)	NA	Q76LC6	RNA-binding protein 24	AT3G54770.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g17760.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g041420.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.18886.1.A1_at	A	A1TS	POPTR_0004s03800	POPTR_0004s03800 (10)	scaffold_4:2671863-2672001(+) (10)	NA	O04084	Serine carboxypeptidase-like 31	AT1G11080.1	serine carboxypeptidase-like 31 	LOC_Os01g22954.1	"serine carboxypeptidase, putative, expressed"	Medtr2g014510.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.18887.1.S1_at	A	A1TS	POPTR_0010s21380	POPTR_0010s21380 (11)	scaffold_10:18687223-18689742(+) (11)	NA	Q42540	Ubiquitin-conjugating enzyme E2 7	AT5G59300.1	ubiquitin carrier protein 7 	LOC_Os05g38550.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g078810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.18888.1.S1_at	A	A1MS	POPTR_0003s06130	POPTR_0003s06130 (11)	scaffold_3:7544922-7545832(-) (11)	NA	Q55DE7	Ataxin-2 homolog	AT1G54170.1	CTC-interacting domain 3 	LOC_Os02g27950.1	"ataxin-2 related protein, putative, expressed"	Medtr2g120650.1	"Ataxin-2, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18888.2.S1_at	A	A1TS	POPTR_0001s17110	POPTR_0001s17110 (11)	scaffold_1:13983179-13983562(+) (11)	NA	Q55DE7	Ataxin-2 homolog	AT3G14010.3	CTC-interacting domain 4 	LOC_Os02g27950.2	"ataxin-2 related protein, putative, expressed"	Medtr2g120650.1	"Ataxin-2, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18889.1.A1_at	A	A1TS	POPTR_0001s18410	POPTR_0001s18410 (10)	scaffold_1:15472352-15472395(-) (10)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os06g06780.1	"harpin-induced protein, putative, expressed"	Medtr2g122860.1	Harpin-induced 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18890.1.A1_a_at	A	A2TS	POPTR_0001s29930	POPTR_0009s08960 (11)//POPTR_0001s29930 (11)	scaffold_1:28510041-28510106(+) (11)//scaffold_9:8059009-8059074(+) (11)	NA	Q9LJN2	Magnesium transporter MRS2-3	AT3G19640.1	magnesium transporter 4 	LOC_Os01g68040.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr5g005440.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18890.1.A1_at	A	A1TS	POPTR_0009s08960	POPTR_0009s08960 (11)	scaffold_9:8059061-8059368(+) (11)	NA	Q9LJN2	Magnesium transporter MRS2-3	AT3G19640.1	magnesium transporter 4 	LOC_Os01g68040.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr5g005440.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18893.1.A1_at	A	A1TS	POPTR_0006s05030	POPTR_0006s05030 (11)	scaffold_6:3501142-3501247(-) (11)	NA	Q6DBQ8	Glycolipid transfer protein domain-containing protein 1	AT2G34690.1	Glycolipid transfer protein (GLTP) family protein 	LOC_Os03g57140.1	"GLTP domain containing protein, putative, expressed"	Medtr2g130020.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.18896.1.S1_at	A	A1TS	POPTR_0007s04070	POPTR_0007s04070 (11)	scaffold_7:2446302-2446784(+) (11)	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G53570.4	mitogen-activated protein kinase kinase kinase 3 	LOC_Os11g10100.1	"STE_MEKK_ste11_MAP3K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g143420.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18899.1.S1_at	A	A1TS	POPTR_0009s05380	POPTR_0009s05380 (10)	scaffold_9:5483990-5485557(-) (10)	NA	Q9SIU2	Nuclear cap-binding protein subunit 1	AT2G13540.1	ARM repeat superfamily protein 	LOC_Os03g22570.2	"MIF4G domain containing protein, putative, expressed"	Medtr7g096860.1	"Initiation factor eIF-4 gamma, middle; ; ; "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.18907.1.A1_s_at	A	A1TS	POPTR_0007s11470	POPTR_0007s11470 (11)	scaffold_7:11836989-11837252(-) (11)	NA	Q9FGT7	Two-component response regulator ARR18	AT4G37180.1	Homeodomain-like superfamily protein 	LOC_Os03g55590.1	"MYB family transcription factor, putative, expressed"	Medtr5g017970.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18908.2.S1_a_at	A	A1TS	POPTR_0017s11310	POPTR_0017s11310 (11)	scaffold_17:11068599-11068955(-) (11)	NA	Q38879	Thioredoxin H2	AT5G39950.1	thioredoxin 2 	LOC_Os07g09310.1	"thioredoxin, putative, expressed"	Medtr7g008470.1	Thioredoxin domain 2; Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.18911.1.A1_s_at	A	A1TS	POPTR_0014s11030	POPTR_0014s11030 (11)	scaffold_14:8225797-8226126(+) (11)	NA	Q8LC45	Probable xyloglucan endotransglucosylase/hydrolase protein 33	AT1G10550.1	xyloglucan:xyloglucosyl transferase 33 	LOC_Os10g02770.1	"glycosyl hydrolases family 16, putative, expressed"	CU633465_9.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal CU633465.7 82577-85450 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.18912.1.A1_at	A	A1TA	POPTR_0014s13730	POPTR_0014s13730 (11)	scaffold_14:10058850-10059290(+) (11)	NA	Q9USZ2	Uncharacterized protein C11G11.07	AT1G12930.1	ARM repeat superfamily protein 	LOC_Os11g34120.1	"exportin 1, putative"	Medtr7g099720.1	Exportin-1/Importin-beta-like 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.18916.1.A1_s_at	A	A1TS	POPTR_0012s07900	POPTR_0012s07900 (11)	scaffold_12:8884417-8885120(+) (11)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50850.1	"BAH domain containing protein, putative, expressed"	Medtr4g149410.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.18921.1.S1_s_at	A	A1TS	POPTR_0004s14090	POPTR_0004s14090 (11)	scaffold_4:14578380-14578622(-) (11)	NA	Q9FT92	Uncharacterized protein At5g08430	AT5G08430.1	SWIB/MDM2 domain;Plus-3;GYF 	LOC_Os05g34790.1	"GYF domain containing protein, putative"	Medtr6g071560.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18926.1.S1_at	A	A1TS	POPTR_0018s06890	POPTR_0018s06890 (10)	scaffold_18:6976399-6976761(-) (10)	NA	P78920	Putative nucleosome assembly protein C2D10.11C	AT2G19480.3	nucleosome assembly protein 1;2 	LOC_Os05g46230.1	"NAP domain containing protein, putative, expressed"	Medtr2g046220.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.18926.2.S1_at	A	A1TS	POPTR_0006s15090	POPTR_0006s15090 (11)	scaffold_6:12544849-12545587(+) (11)	NA	P78920	Putative nucleosome assembly protein C2D10.11C	AT2G19480.3	nucleosome assembly protein 1;2 	LOC_Os05g46230.1	"NAP domain containing protein, putative, expressed"	Medtr2g046220.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.18926.3.S1_at	A	A1MS	POPTR_0018s06890	POPTR_0018s06890 (11)	scaffold_18:6979555-6979818(-) (11)	NA	P78920	Putative nucleosome assembly protein C2D10.11C	AT2G19480.3	nucleosome assembly protein 1;2 	LOC_Os05g46230.1	"NAP domain containing protein, putative, expressed"	Medtr2g046220.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.18935.1.A1_at	A	A1TS	POPTR_0001s27460	POPTR_0001s27460 (11)	scaffold_1:26362876-26363289(-) (11)	NA	NA	NA	AT3G52110.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages. 	LOC_Os03g07810.1	expressed protein	Medtr7g110930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18936.1.A1_at	A	A1MA	POPTR_0001s34010	POPTR_0001s34010 (11)	scaffold_1:32161027-32161517(-) (11)	NA	Q9SE42	"Ribulose-phosphate 3-epimerase, cytoplasmic isoform"	AT3G01850.2	Aldolase-type TIM barrel family protein 	LOC_Os09g32810.1	"ribulose-phosphate 3-epimerase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0004750|ribulose-phosphate 3-epimerase activity	NA
PtpAffx.18937.1.A1_at	A	A1TS	POPTR_0001s11110	POPTR_0001s11110 (10)	scaffold_1:8611458-8615204(-) (10)	NA	Q498F0	WD repeat-containing protein 44	AT5G24320.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g02440.2	"WD repeat-containing protein 44, putative, expressed"	Medtr1g008870.1	"WD-40 repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18942.1.A1_at	A	A1TS	POPTR_0018s02020	POPTR_0018s02020 (11)	scaffold_18:1815375-1816678(+) (11)	NA	Q94A05	"Probable beta-1,3-galactosyltransferase 10"	AT4G32120.1	Galactosyltransferase family protein 	LOC_Os06g08005.1	"galactosyltransferase family protein, putative, expressed"	Medtr5g009800.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.1895.2.A1_s_at	A	A1TS	POPTR_0004s23810	POPTR_0004s23810 (11)	scaffold_4:22436260-22437472(-) (11)	NA	Q6DEY1	Survival of motor neuron-related-splicing factor 30	AT2G02570.4	nucleic acid binding;RNA binding 	LOC_Os08g01840.1	"nucleic acid binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18953.2.A1_at	A	A1TS	POPTR_0001s47000	POPTR_0001s47000 (9)	scaffold_1:47327811-47328222(-) (9)	NA	C0LGQ9	Probable LRR receptor-like serine/threonine-protein kinase At4g20940	AT4G20940.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g05190.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g129810.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.18953.3.A1_a_at	A	A1TS	POPTR_0001s47000	POPTR_0001s47000 (11)	scaffold_1:47328268-47328609(-) (11)	NA	C0LGQ9	Probable LRR receptor-like serine/threonine-protein kinase At4g20940	AT4G20940.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g05190.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g129810.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.18954.1.A1_at	A	A1TS	POPTR_0001s18130	POPTR_0001s18130 (11)	scaffold_1:15176198-15176698(-) (11)	NA	NA	NA	AT1G52320.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT5G25590.1); Has 8725 Blast hits to 7476 proteins in 620 species: Archae - 10; Bacteria - 622; Metazoa - 3286; Fungi - 1319; Plants - 1442; Viruses - 221; Other Eukaryotes - 1825 (source: NCBI BLink). "	LOC_Os01g31580.1	"BZIP protein, putative, expressed"	Medtr2g123100.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18957.1.A1_at	A	A1TS	POPTR_0001s01640	POPTR_0001s01640 (11)	scaffold_1:1219600-1221397(-) (11)	NA	Q9C6X2	Secretory carrier-associated membrane protein 4	AT1G32050.1	SCAMP family protein 	LOC_Os04g50890.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr5g027960.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
PtpAffx.18957.2.S1_s_at	A	A1TS	POPTR_0003s09810	POPTR_0003s09810 (11)	scaffold_3:11038951-11040897(+) (11)	NA	Q9C6X2	Secretory carrier-associated membrane protein 4	AT1G32050.1	SCAMP family protein 	LOC_Os04g50890.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr5g027960.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
PtpAffx.18960.1.S1_at	A	A1TS	POPTR_0003s12470	POPTR_0003s12470 (11)	scaffold_3:13038891-13039502(+) (11)	NA	NA	NA	AT1G63300.1	Myosin heavy chain-related protein 	LOC_Os10g36060.1	"protein transport protein-related, putative, expressed"	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18964.1.A1_at	A	A1TS	POPTR_0014s10370	POPTR_0014s10370 (11)	scaffold_14:7765604-7765862(-) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT5G24590.2	TCV-interacting protein 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.18969.1.A1_at	A	A1TS	POPTR_0012s05050	POPTR_0012s05050 (11)	scaffold_12:4558029-4558367(+) (11)	NA	Q43681	Probable non-specific lipid-transfer protein AKCS9	AT3G18280.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g47700.1	"LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g096400.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18981.2.S1_s_at	A	A1TS	POPTR_0003s14690	POPTR_0003s14690 (11)	scaffold_3:14697897-14698150(+) (11)	NA	Q16G71	Mediator of RNA polymerase II transcription subunit 10	AT1G26665.1	"Mediator complex, subunit Med10 "	LOC_Os09g35920.2	"mediator of RNA polymerase II transcription subunit 10, putative, expressed"	Medtr4g133900.1	"Mediator of RNA polymerase II transcription subunit 10, related "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.19002.1.S1_at	A	A1TS	POPTR_0003s17180	POPTR_0003s17180 (11)	scaffold_3:16622376-16622835(+) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19017.1.S1_s_at	A	A2TS	POPTR_0008s19920	POPTR_0010s04270 (11)//POPTR_0008s19920 (11)	scaffold_10:5282089-5282492(-) (11)//scaffold_8:13765507-13765910(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.19027.1.S1_a_at	A	A2TS	POPTR_0018s12890	POPTR_0018s12900 (11)//POPTR_0018s12890 (11)	scaffold_18:13387935-13388166(-) (11)//scaffold_18:13393789-13394020(-) (11)//scaffold_18:13402654-13402885(-) (10)	NA	P29602	Cucumber peeling cupredoxin	AT2G25060.1	early nodulin-like protein 14 	LOC_Os05g49580.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.19036.1.S1_at	A	A1TS	POPTR_0001s22700	POPTR_0001s22700 (11)	scaffold_1:21582047-21584380(-) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT5G21090.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g59440.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g094910.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.19042.1.S1_at	A	A1TS	POPTR_0010s08420	POPTR_0010s08420 (11)	scaffold_10:9335483-9336295(-) (11)	NA	NA	NA	AT1G04340.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19046.2.A1_s_at	A	A2TS	POPTR_0003s01220	POPTR_0003s01240 (11)//POPTR_0003s01220 (11)	scaffold_3:1080938-1080983(+) (11)//scaffold_3:1092146-1092191(+) (11)//scaffold_3:1093395-1093440(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.19059.1.A1_at	A	A1TS	POPTR_0013s00930	POPTR_0013s00930 (9)	scaffold_13:475904-476667(-) (9)	NA	A4IF69	NHL repeat-containing protein 2	AT1G56500.1	haloacid dehalogenase-like hydrolase family protein 	LOC_Os03g19760.1	"HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed"	Medtr4g023880.1	"TolB, C-terminal "	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.19078.1.S1_at	A	A1TS	POPTR_0017s09030	POPTR_0017s09030 (11)	scaffold_17:7688638-7689207(-) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT5G13180.1	NAC domain containing protein 83 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.19082.1.S1_s_at	A	A1TS	POPTR_0006s10170	POPTR_0006s10170 (11)	scaffold_6:7541979-7542487(-) (11)	NA	Q54GB2	CTD small phosphatase-like protein 2	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19090.1.A1_a_at	A	A1TS	POPTR_0016s10750	POPTR_0016s10750 (11)	scaffold_16:9083824-9084629(+) (11)	POPTR_0001s00200 (7)	Q9SR77	"Heme-binding-like protein At3g10130, chloroplastic"	AT3G10130.1	SOUL heme-binding family protein 	LOC_Os02g33020.1	"SOUL heme-binding protein, putative, expressed"	Medtr7g127420.1	SOUL heme-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19092.1.A1_at	A	A1TS	POPTR_0008s00690	POPTR_0008s00690 (11)	scaffold_8:315670-316164(-) (11)	NA	Q9C8K7	F-box/kelch-repeat protein At1g51550	AT1G51550.1	Kelch repeat-containing F-box family protein 	LOC_Os08g13360.2	"kelch repeat protein, putative, expressed"	Medtr2g041400.1	"PAS; Speract/scavenger receptor; Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1910.1.S1_at	A	A1TS	POPTR_0012s02170	POPTR_0012s02170 (11)	scaffold_12:1813076-1813524(+) (11)	NA	Q9M3B0	Probable pectinesterase/pectinesterase inhibitor 34	AT3G49220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g13320.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.1912.1.A1_a_at	A	A1TS	POPTR_0007s12040	POPTR_0007s12040 (11)	scaffold_7:12370025-12370163(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g018630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1912.11.A1_at	A	A1TS	POPTR_0007s12040	POPTR_0007s12040 (10)	scaffold_7:12365171-12371542(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g018630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1912.3.S1_a_at	A	A1TS	POPTR_0016s10550	POPTR_0016s10550 (11)	scaffold_16:8858396-8858652(-) (11)	NA	Q5AYT7	Hsp70 nucleotide exchange factor fes1	AT3G09350.1	Fes1A 	LOC_Os03g60780.1	"armadillo/beta-catenin-like repeat containing protein, expressed"	Medtr4g019550.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1912.3.S1_at	A	A1TA	POPTR_0007s12040	POPTR_0007s12040 (11)	scaffold_7:12370038-12370078(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g018630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1912.4.S1_at	A	A1TS	POPTR_0016s10550	POPTR_0016s10550 (9)	scaffold_16:8858251-8858378(-) (9)	NA	Q5AYT7	Hsp70 nucleotide exchange factor fes1	AT3G09350.1	Fes1A 	LOC_Os03g60780.1	"armadillo/beta-catenin-like repeat containing protein, expressed"	Medtr4g019550.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1912.6.S1_at	A	A1TS	POPTR_0018s09060	POPTR_0018s09060 (11)	scaffold_18:9937308-9937733(-) (11)	NA	Q8S3D1	Transcription factor bHLH68	AT4G29100.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g14010.1	"ethylene-responsive protein related, putative, expressed"	AC233783_18.2	Helix-loop-helix DNA-binding AC233783.1 82495-77637 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1912.7.S1_at	A	A1TS	POPTR_0006s08830	POPTR_0006s08830 (9)	scaffold_6:6499637-6500121(+) (9)	NA	Q0V4C4	Hsp70 nucleotide exchange factor FES1	AT3G09350.1	Fes1A 	LOC_Os03g60780.1	"armadillo/beta-catenin-like repeat containing protein, expressed"	Medtr4g019550.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1912.8.S1_a_at	A	A1TS	POPTR_0018s09060	POPTR_0018s09060 (11)	scaffold_18:9939819-9940364(-) (11)	NA	Q8S3D1	Transcription factor bHLH68	AT4G29100.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g14010.1	"ethylene-responsive protein related, putative, expressed"	AC233783_18.2	Helix-loop-helix DNA-binding AC233783.1 82495-77637 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1912.9.S1_at	A	A1TS	POPTR_0016s10550	POPTR_0016s10550 (10)	scaffold_16:8861811-8861876(-) (10)	NA	Q5AYT7	Hsp70 nucleotide exchange factor fes1	AT3G09350.1	Fes1A 	LOC_Os03g60780.1	"armadillo/beta-catenin-like repeat containing protein, expressed"	Medtr4g019550.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1912.9.S1_s_at	A	A1TS	POPTR_0016s10550	POPTR_0016s10550 (11)	scaffold_16:8861335-8861720(-) (11)	NA	Q5AYT7	Hsp70 nucleotide exchange factor fes1	AT3G09350.1	Fes1A 	LOC_Os03g60780.1	"armadillo/beta-catenin-like repeat containing protein, expressed"	Medtr4g019550.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19120.1.A1_at	A	A1TS	POPTR_0006s25400	POPTR_0006s25400 (11)	scaffold_6:23804713-23805859(-) (11)	NA	Q6DFS0	Thioredoxin-related transmembrane protein 2	AT5G11640.1	Thioredoxin superfamily protein 	LOC_Os01g10340.1	expressed protein	Medtr1g008140.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19127.1.S1_a_at	A	A1TS	POPTR_0010s00820	POPTR_0010s00820 (11)	scaffold_10:521631-522628(-) (11)	NA	NA	NA	AT4G16060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). "	LOC_Os05g29020.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19134.1.A1_a_at	A	A1TS	POPTR_0004s09510	POPTR_0004s09510 (11)	scaffold_4:8047895-8047954(+) (11)	NA	Q43681	Probable non-specific lipid-transfer protein AKCS9	AT3G18280.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g47700.1	"LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g093780.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19143.1.A1_at	A	A1TS	POPTR_0010s12160	POPTR_0010s12160 (10)	scaffold_10:12228959-12229057(-) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G01480.1	O-fucosyltransferase family protein 	LOC_Os05g38490.1	"growth regulator related protein, putative"	Medtr1g034900.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19145.1.S1_at	A	A1TS	POPTR_0018s01200	POPTR_0018s01200 (11)	scaffold_18:1110378-1111219(-) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT4G32551.1	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 	LOC_Os01g42270.1	"transcriptional corepressor LEUNIG, putative"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19152.1.S1_at	A	A1TS	POPTR_0003s16580	POPTR_0003s16580 (11)	scaffold_3:16156288-16156743(+) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT5G50760.1	SAUR-like auxin-responsive protein family  	LOC_Os01g70050.1	OsSAUR3 - Auxin-responsive SAUR gene family member	Medtr3g150870.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19154.1.S1_at	A	A1TS	POPTR_0005s11070	POPTR_0005s11070 (11)	scaffold_5:8027131-8027605(+) (11)	NA	Q43872	Peroxidase 64	AT5G42180.1	Peroxidase superfamily protein 	LOC_Os02g58720.2	"peroxidase precursor, putative, expressed"	Medtr5g022850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.1916.1.A1_at	A	A1TS	POPTR_0007s09310	POPTR_0007s09310 (10)	scaffold_7:8665956-8667128(-) (10)	NA	Q05753	"Ankyrin repeat domain-containing protein, chloroplastic"	AT5G66055.1	ankyrin repeat protein 	LOC_Os03g04300.2	"ankyrin repeat domain containing protein, expressed"	Medtr5g021980.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1916.2.A1_at	A	A1TS	POPTR_0005s10790	POPTR_0005s10790 (11)	scaffold_5:7742972-7744146(+) (11)	NA	Q05753	"Ankyrin repeat domain-containing protein, chloroplastic"	AT5G66055.1	ankyrin repeat protein 	LOC_Os03g04300.2	"ankyrin repeat domain containing protein, expressed"	Medtr5g021980.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19179.2.A1_a_at	A	A1TS	POPTR_0007s14790	POPTR_0007s14790 (11)	scaffold_7:14529211-14529572(-) (11)	NA	NA	NA	AT3G49800.1	BSD domain-containing protein 	LOC_Os01g56100.1	"BSD domain containing protein, expressed"	Medtr5g015300.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19182.1.A1_at	A	A1TS	POPTR_0022s00750	POPTR_0022s00750 (10)	scaffold_22:356722-357287(-) (11)	NA	NA	NA	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr2g005630.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1919.1.S1_at	A	A1MS	POPTR_0015s11000	POPTR_0015s11000 (10)	scaffold_15:11713456-11713876(-) (10)	NA	O13965	Meiotically up-regulated gene 70 protein	AT5G50530.1	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os01g69900.1	"CBS domain-containing protein, putative, expressed"	Medtr3g150700.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19218.1.S1_at	A	A1TS	POPTR_0003s06190	POPTR_0003s06190 (10)	scaffold_3:7632043-7635391(+) (10)	NA	Q8GYL9	Protein Brevis radix-like 2	AT3G14000.2	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19221.1.A1_at	A	A1TS	POPTR_0003s05470	POPTR_0003s05470 (11)	scaffold_3:6745729-6746111(-) (11)	NA	NA	NA	AT3G24490.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os01g52090.2	"transcription factor like protein, putative, expressed"	AC234703_9.1	"Myb, DNA-binding AC234703.1 59278-57295 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19234.1.S1_at	A	A1TS	POPTR_0001s20930	POPTR_0001s20930 (11)	scaffold_1:19189668-19190956(+) (11)	NA	NA	NA	AT3G15900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g56030.1	expressed protein	Medtr2g126730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19236.1.S1_at	A	A1TS	POPTR_0003s09280	POPTR_0003s09280 (11)	scaffold_3:10579247-10579441(-) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G17790.1	SNARE associated Golgi protein family 	LOC_Os02g46660.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19236.1.S1_s_at	A	A1TS	POPTR_0003s09280	POPTR_0003s09280 (11)	scaffold_3:10579530-10579775(-) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G17790.1	SNARE associated Golgi protein family 	LOC_Os02g46660.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19246.1.S1_at	A	A1TS	POPTR_0016s07040	POPTR_0016s07040 (11)	scaffold_16:4828443-4828732(-) (11)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.19267.1.S1_a_at	A	A1TS	POPTR_0002s10650	POPTR_0002s10650 (10)	scaffold_2:7737342-7737818(+) (11)	NA	NA	NA	AT4G38060.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os08g31940.1	expressed protein	Medtr5g075280.1	Acetate and butyrate kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19271.1.S1_s_at	A	A1TS	POPTR_0002s14410	POPTR_0002s14410 (11)	scaffold_2:10682564-10682825(-) (11)	NA	P38389	Protein transport protein Sec61 subunit beta	AT3G60540.2	"Preprotein translocase Sec, Sec61-beta subunit protein "	LOC_Os12g07490.1	"protein transport protein Sec61 subunit beta, putative, expressed"	Medtr4g134690.1	Sec61beta 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19286.1.S1_at	A	A1TS	POPTR_0009s08720	POPTR_0009s08720 (11)	scaffold_9:7887189-7887659(+) (11)	NA	NA	NA	AT4G33740.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 138092 Blast hits to 73110 proteins in 2951 species: Archae - 732; Bacteria - 17903; Metazoa - 48520; Fungi - 16808; Plants - 7078; Viruses - 1044; Other Eukaryotes - 46007 (source: NCBI BLink). 	LOC_Os06g36050.1	expressed protein	AC235005_3.1	hypothetical protein AC235005.1 9201-11167 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.193.1.S1_at	A	A1TS	POPTR_0007s05340	POPTR_0007s05340 (11)	scaffold_7:3426573-3426618(-) (11)	NA	Q9C8N5	Protein SENSITIVE TO PROTON RHIZOTOXICITY 1	AT1G34370.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os02g36360.3	"ZOS2-11 - C2H2 zinc finger protein, expressed"	Medtr3g101820.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1932.1.S1_at	A	A1TS	POPTR_0001s44070	POPTR_0001s44070 (9)	scaffold_1:44523084-44524355(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19322.1.S1_s_at	A	A1TS	POPTR_0003s11720	POPTR_0003s11720 (11)	scaffold_3:12515098-12516067(-) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT4G22840.1	Sodium Bile acid symporter family 	LOC_Os09g34900.1	"bile acid sodium symporter family protein, putative, expressed"	Medtr5g011580.1	Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.19327.2.S1_at	A	A1TS	POPTR_0006s15630	POPTR_0006s15630 (10)	scaffold_6:13084802-13084936(-) (10)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19327.2.S1_s_at	A	A2TS	POPTR_0006s15630	POPTR_0006s15630 (11)//POPTR_0018s06840 (11)	scaffold_18:6894723-6897018(-) (11)//scaffold_6:13082405-13084806(-) (11)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19367.1.S1_at	A	A1TS	POPTR_0003s19700	POPTR_0003s19700 (11)	scaffold_3:18368199-18368628(+) (11)	NA	Q9M1I2	Probable peptide/nitrate transporter At3g54450	AT3G54450.1	Major facilitator superfamily protein 	LOC_Os01g65110.1	"POT family protein, expressed"	Medtr8g042650.1	"TGF-beta receptor, type I/II extracellular region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1937.1.S1_a_at	A	A1TS	POPTR_0003s14810	POPTR_0003s14810 (11)	scaffold_3:14785120-14785256(-) (11)	NA	NA	NA	AT3G07200.2	RING/U-box superfamily protein 	LOC_Os09g32690.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1937.3.A1_at	A	A1TS	POPTR_0003s14810	POPTR_0003s14810 (11)	scaffold_3:14784691-14784835(-) (11)	NA	NA	NA	AT3G07200.2	RING/U-box superfamily protein 	LOC_Os09g32690.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1937.4.A1_at	A	A1MS	POPTR_0003s14810	POPTR_0003s14810 (11)	scaffold_3:14785460-14785571(-) (11)	NA	NA	NA	AT3G07200.2	RING/U-box superfamily protein 	LOC_Os09g32690.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19371.1.S1_at	A	A1TS	POPTR_0001s04200	POPTR_0001s04200 (11)	scaffold_1:3317674-3318102(-) (11)	NA	Q8BKC5	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os07g38760.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.19378.1.S1_at	A	A1TS	POPTR_0002s20030	POPTR_0002s20030 (10)	scaffold_2:15973426-15973887(+) (10)	NA	Q9SY66	Protein FAR1-RELATED SEQUENCE 11	AT1G10240.1	FAR1-related sequence 11 	LOC_Os04g36590.1	"transposon protein, putative, unclassified, expressed"	Medtr2g038970.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.19389.1.S1_at	A	A1TS	POPTR_0009s13210	POPTR_0009s13210 (11)	scaffold_9:10565737-10566608(-) (11)	NA	Q9M4S8	"Triosephosphate isomerase, chloroplastic"	AT2G21170.1	triosephosphate isomerase 	LOC_Os09g36450.1	"triosephosphate isomerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
PtpAffx.194.1.S1_at	A	A1TS	POPTR_0001s34440	POPTR_0001s34440 (10)	scaffold_1:32574222-32574574(+) (10)	NA	NA	NA	AT1G29350.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os01g47430.2	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr4g136700.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19408.1.S1_a_at	A	A2TS	POPTR_0008s17700	POPTR_0010s06820 (11)//POPTR_0008s17700 (11)	scaffold_10:8090642-8090868(+) (11)//scaffold_8:11883571-11883798(-) (11)	NA	Q9LIP2	Proteasome subunit beta type-5-B	AT3G26340.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os06g06030.1	"peptidase, T1 family, putative, expressed"	Medtr3g117480.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.19409.1.S1_at	A	A1TS	POPTR_0005s27140	POPTR_0005s27140 (10)	scaffold_5:24931978-24933109(+) (11)	NA	NA	NA	AT1G63610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 537 Blast hits to 411 proteins in 100 species: Archae - 0; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink). 	LOC_Os02g58650.1	expressed protein	Medtr4g097080.1	"seed maturation-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19419.1.S1_at	A	A1TS	POPTR_0013s15650	POPTR_0013s15650 (11)	scaffold_13:15578071-15578874(+) (11)	NA	B8HUU1	NAD(P)H-quinone oxidoreductase subunit N	AT5G58260.1	"oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor "	LOC_Os01g66000.1	"NADH dehydrogenase I subunit N, putative, expressed"	Medtr3g084050.1	"NADH dehydrogenase I subunit N, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19435.1.S1_a_at	A	A1TS	POPTR_0002s07180	POPTR_0002s07180 (11)	scaffold_2:4905961-4907324(-) (11)	NA	NA	NA	AT1G21350.3	Thioredoxin superfamily protein 	LOC_Os07g15670.3	"peroxiredoxin, putative, expressed"	Medtr3g124950.1	Thioredoxin domain 2; Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.19435.2.A1_a_at	A	A1TS	POPTR_0002s07180	POPTR_0002s07180 (9)	scaffold_2:4904386-4904898(-) (9)	NA	NA	NA	AT1G21350.3	Thioredoxin superfamily protein 	LOC_Os07g15670.3	"peroxiredoxin, putative, expressed"	Medtr3g124950.1	Thioredoxin domain 2; Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.19463.1.S1_at	A	A1TS	POPTR_0001s40940	POPTR_0001s40940 (11)	scaffold_1:40498720-40499257(+) (11)	NA	Q5JNJ5	Early nodulin-like protein 1	AT5G53870.1	early nodulin-like protein 1 	LOC_Os01g54430.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g108120.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.19470.1.S1_at	A	A1TS	POPTR_0002s13700	POPTR_0002s13700 (9)	scaffold_2:10158959-10159924(-) (9)	NA	NA	NA	AT3G60410.3	Protein of unknown function (DUF1639) 	LOC_Os05g47810.1	expressed protein	Medtr8g105330.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19505.1.S1_at	A	A1TS	POPTR_0017s12610	POPTR_0017s12610 (11)	scaffold_17:12816339-12817148(+) (11)	NA	Q9FLZ8	EID1-like F-box protein 2	AT5G39360.1	EID1-like 2 	LOC_Os07g40710.2	"circadian clock coupling factor-related, putative, expressed"	Medtr6g013970.1	"EDL1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19521.1.A1_at	A	A1TS	POPTR_0001s23810	POPTR_0001s23810 (11)	scaffold_1:23202033-23203929(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT3G60080.1	RING/U-box superfamily protein 	LOC_Os01g74040.1	"zinc finger, RING-type, putative, expressed"	Medtr2g117130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19521.2.A1_a_at	A	A1TS	POPTR_0001s23810	POPTR_0001s23810 (11)	scaffold_1:23201817-23202030(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT3G60080.1	RING/U-box superfamily protein 	LOC_Os01g74040.1	"zinc finger, RING-type, putative, expressed"	Medtr2g117130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19521.2.A1_at	A	A1MS	POPTR_0001s23810	POPTR_0001s23810 (11)	scaffold_1:23202068-23202383(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT3G60080.1	RING/U-box superfamily protein 	LOC_Os01g74040.1	"zinc finger, RING-type, putative, expressed"	Medtr2g117130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19531.1.S1_at	A	A1TS	POPTR_0014s10680	POPTR_0014s10680 (11)	scaffold_14:7950169-7950565(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT1G09540.1	myb domain protein 61 	LOC_Os05g04820.1	"MYB family transcription factor, putative, expressed"	Medtr7g134240.1	"MYB2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19537.1.S1_at	A	A1MS	POPTR_0014s09470	POPTR_0014s09470 (11)	scaffold_14:7033939-7034449(-) (11)	NA	Q84JL3	E3 ubiquitin-protein ligase SINAT3	AT3G61790.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os02g19140.1	"seven in absentia protein family domain containing protein, expressed"	Medtr1g009230.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.19537.2.S1_at	A	A2TS	POPTR_0002s17250	POPTR_0002s17250 (10)//POPTR_0014s09470 (9)	scaffold_14:7035058-7035092(-) (9)//scaffold_2:13018973-13019007(-) (10)	NA	Q84JL3	E3 ubiquitin-protein ligase SINAT3	AT3G61790.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os02g19140.1	"seven in absentia protein family domain containing protein, expressed"	Medtr1g009230.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.19537.2.S1_s_at	A	A1TS	POPTR_0002s17250	POPTR_0002s17250 (11)	scaffold_2:13017550-13018979(-) (11)	POPTR_0014s09470 (6)	Q84JL3	E3 ubiquitin-protein ligase SINAT3	AT3G61790.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os02g19140.1	"seven in absentia protein family domain containing protein, expressed"	Medtr1g009230.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.19541.1.S1_at	A	A1TS	POPTR_0005s26440	POPTR_0005s26440 (11)	scaffold_5:24466809-24467063(+) (11)	NA	NA	NA	AT1G11320.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os06g50850.1	expressed protein	Medtr3g156640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19543.1.A1_at	A	A1MS	POPTR_0010s20890	POPTR_0010s20890 (9)	scaffold_10:18323028-18323541(+) (9)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT2G39720.1	RING-H2 finger C2A 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19544.1.S1_s_at	A	A2TS	POPTR_0002s08550	POPTR_0002s08550 (11)//POPTR_0005s15790 (11)	scaffold_2:5974855-5976313(+) (11)//scaffold_5:12388977-12390615(+) (11)	NA	NA	NA	AT4G08310.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins in 1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes - 15245 (source: NCBI BLink). 	LOC_Os11g34190.1	expressed protein	Medtr3g097550.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19546.1.S1_at	A	A1TS	POPTR_0003s02520	POPTR_0003s02520 (11)	scaffold_3:2608605-2608770(+) (11)	NA	Q54VT8	Probable glycerol kinase	AT1G80460.1	Actin-like ATPase superfamily protein 	LOC_Os04g55410.1	"FGGY family of carbohydrate kinases, putative, expressed"	Medtr4g005800.1	Glycerol kinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.19546.1.S1_s_at	A	A1TS	POPTR_0003s02520	POPTR_0003s02520 (11)	scaffold_3:2608350-2608803(+) (11)	NA	Q54VT8	Probable glycerol kinase	AT1G80460.1	Actin-like ATPase superfamily protein 	LOC_Os04g55410.1	"FGGY family of carbohydrate kinases, putative, expressed"	Medtr4g005800.1	Glycerol kinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.19559.1.A1_at	A	A1TS	POPTR_0009s07900	POPTR_0009s07900 (11)	scaffold_9:7320399-7320874(+) (11)	NA	Q0WNN7	"Pentatricopeptide repeat-containing protein At2g30100, chloroplastic"	AT2G30100.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os05g28500.1	"ubiquitin family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19561.1.S1_at	A	A1TS	POPTR_0006s29450	POPTR_0006s29450 (11)	scaffold_6:26802861-26803408(-) (11)	POPTR_0018s04120 (7)	Q9SCL7	"Acetylglutamate kinase, chloroplastic"	AT3G57560.1	N-acetyl-l-glutamate kinase 	LOC_Os02g44000.1	"amino acid kinase, putative"	Medtr3g135710.1	Acetylglutamate kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.19564.1.S1_s_at	A	A1TS	POPTR_0002s10880	POPTR_0002s10880 (10)	scaffold_2:7925943-7926308(-) (10)	NA	Q38827	Auxin-responsive protein IAA9	AT5G65670.2	indole-3-acetic acid inducible 9 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g078700.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.19566.1.A1_at	A	A1TS	POPTR_0005s19980	POPTR_0005s19980 (11)	scaffold_5:18979518-18979900(+) (11)	NA	Q80W98	Small glutamine-rich tetratricopeptide repeat-containing protein beta	AT4G08320.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g59394.2	expressed protein	Medtr1g037480.1	"tetratricopeptide repeat, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19571.1.A1_at	A	A1TS	POPTR_0016s03240	POPTR_0016s03240 (9)	scaffold_16:1656373-1656750(-) (9)	NA	Q940D0	Two-component response regulator ARR1	AT3G10760.1	Homeodomain-like superfamily protein 	LOC_Os05g34110.1	"homeodomain-related, putative, expressed"	Medtr7g105990.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1958.1.S1_at	A	A1TS	POPTR_0004s05120	POPTR_0004s05120 (10)	scaffold_4:3864083-3864560(-) (10)	NA	Q9FJ41	GDSL esterase/lipase At5g45950	AT5G45950.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g01980.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g106480.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.19580.1.S1_at	A	A1TS	POPTR_0014s08520	POPTR_0014s08520 (11)	scaffold_14:6331018-6333036(-) (11)	NA	Q54IF9	Myb-like protein G	AT4G01280.2	Homeodomain-like superfamily protein 	LOC_Os02g45670.1	"myb-like DNA-binding domain containing protein, expressed"	AC235567_21.1	Homeodomain-related AC235567.1 79376-72886 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1959.1.S1_at	A	A1TS	POPTR_0008s16630	POPTR_0008s16630 (11)	scaffold_8:11170954-11172412(+) (11)	NA	P48489	Serine/threonine-protein phosphatase PP1	AT2G39840.1	type one serine/threonine protein phosphatase 4 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.19592.5.A1_at	A	A1TS	POPTR_0015s08740	POPTR_0015s08740 (11)	scaffold_15:10074511-10074547(+) (11)	NA	Q9XFS9	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic"	AT5G62790.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase 	LOC_Os01g01710.1	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed"	Medtr8g125620.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase; ; 	GO:0055114|oxidation reduction||GO:0008299|isoprenoid biosynthetic process	GO:0030604|1-deoxy-D-xylulose-5-phosphate reductoisomerase activity||GO:0046872|metal ion binding	NA
PtpAffx.19606.1.A1_s_at	A	A1TS	POPTR_0010s11480	POPTR_0010s11480 (11)	scaffold_10:11728538-11729466(+) (11)	NA	P47818	Protein CCC1	AT2G01770.1	vacuolar iron transporter 1 	LOC_Os09g23300.1	"integral membrane protein, putative, expressed"	Medtr4g156680.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19609.1.A1_a_at	A	A2TS	POPTR_0001s13850	POPTR_0001s13850 (11)//POPTR_0003s17080 (11)	scaffold_1:10912777-10912895(-) (11)//scaffold_3:16553896-16554014(-) (11)	NA	NA	NA	AT1G67330.1	Protein of unknown function (DUF579) 	LOC_Os11g29780.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g103910.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19609.1.A1_at	A	A1TS	POPTR_0001s13850	POPTR_0001s13850 (11)	scaffold_1:10912395-10912832(-) (11)	NA	NA	NA	AT1G67330.1	Protein of unknown function (DUF579) 	LOC_Os11g29780.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g103910.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19609.2.A1_at	A	A1TS	POPTR_0003s17080	POPTR_0003s17080 (11)	scaffold_3:16553656-16554201(-) (11)	NA	NA	NA	AT1G67330.1	Protein of unknown function (DUF579) 	LOC_Os11g29780.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g103910.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19634.1.S1_at	A	A1TS	POPTR_0006s05450	POPTR_0006s05450 (11)	scaffold_6:3853636-3853978(-) (11)	NA	Q0WW21	Anthocyanin 5-O-glucosyltransferase	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19651.1.A1_at	A	A1MS	POPTR_0008s09070	POPTR_0008s09070 (11)	scaffold_8:5627259-5627708(+) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G69450.2	Early-responsive to dehydration stress protein (ERD4) 	LOC_Os12g39320.1	"DUF221 domain containing protein, expressed"	Medtr5g045580.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.19655.1.A1_at	A	A1TS	POPTR_0014s00310	POPTR_0014s00310 (11)	scaffold_14:127559-127995(-) (11)	POPTR_0012s08920 (7)	Q55C80	WD repeat-containing protein 85 homolog	AT5G63010.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g42880.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g103690.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1966.1.A1_a_at	A	A1TS	POPTR_0013s06680	POPTR_0013s06680 (11)	scaffold_13:5397468-5397957(+) (11)	NA	O49621	MLO-like protein 1	AT4G02600.2	Seven transmembrane MLO family protein 	LOC_Os01g66510.1	"MLO domain containing protein, putative, expressed"	Medtr3g163760.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.19666.1.A1_at	A	A1TS	POPTR_0019s08520	POPTR_0019s08520 (9)	scaffold_19:10036424-10037003(-) (9)	NA	A6LAM0	ATP phosphoribosyltransferase	AT1G09795.1	ATP phosphoribosyl transferase 2 	LOC_Os03g04169.1	"ATP phosphoribosyltransferase, putative, expressed"	Medtr2g005840.3	ATP phosphoribosyltransferase; ; 	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0003879|ATP phosphoribosyltransferase activity	GO:0005737|cytoplasm
PtpAffx.19666.2.A1_a_at	A	A1TS	POPTR_0019s08520	POPTR_0019s08520 (11)	scaffold_19:10035707-10036003(-) (11)	NA	A6LAM0	ATP phosphoribosyltransferase	AT1G09795.1	ATP phosphoribosyl transferase 2 	LOC_Os03g04169.1	"ATP phosphoribosyltransferase, putative, expressed"	Medtr2g005840.3	ATP phosphoribosyltransferase; ; 	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0003879|ATP phosphoribosyltransferase activity	GO:0005737|cytoplasm
PtpAffx.19671.1.S1_s_at	A	A1TS	POPTR_0006s11410	POPTR_0006s11410 (11)	scaffold_6:8639790-8640286(-) (11)	NA	Q9ZVI6	Protein LURP-one-related 8	AT2G38640.1	Protein of unknown function (DUF567) 	LOC_Os11g02750.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126520.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19675.1.A1_s_at	A	A1TS	POPTR_0006s23550	POPTR_0006s23550 (11)	scaffold_6:22263433-22263595(-) (11)	NA	NA	NA	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.6	"smr domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19675.2.S1_s_at	A	A1TS	POPTR_0018s05860	POPTR_0018s05860 (11)	scaffold_18:5491138-5491303(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g158740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19700.1.S1_a_at	A	A1TS	POPTR_0002s03100	POPTR_0002s03100 (11)	scaffold_2:1924149-1924377(-) (11)	NA	B8E0B2	GTPase obg	AT5G18570.1	GTP1/OBG family protein 	LOC_Os03g58540.1	"spo0B-associated GTP-binding protein, putative, expressed"	Medtr1g028590.1	GTP1/OBG domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.19705.1.A1_at	A	A1TS	POPTR_0006s24570	POPTR_0006s24570 (10)	scaffold_6:23166309-23166454(+) (10)	NA	O49954	"Glycine dehydrogenase [decarboxylating], mitochondrial"	AT4G33010.1	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19715.1.A1_at	A	A1TS	POPTR_0002s25480	POPTR_0002s25480 (11)	scaffold_2:22559682-22559931(+) (11)	NA	NA	NA	AT2G20230.1	Tetraspanin family protein 	LOC_Os06g51480.1	expressed protein	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.19719.1.A1_at	A	A1TS	POPTR_0003s08490	POPTR_0003s08490 (11)	scaffold_3:9905953-9906343(-) (11)	NA	O80501	Ras-related protein RABH1B	AT2G44610.1	Ras-related small GTP-binding family protein 	LOC_Os07g31370.1	"ras-related protein, putative, expressed"	Medtr5g014080.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.19734.2.A1_at	A	A1TS	POPTR_0016s03310	POPTR_0016s03310 (11)	scaffold_16:1713930-1714008(-) (11)	NA	NA	NA	AT5G05140.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os05g34210.1	expressed protein	Medtr7g106190.2	"Transcription factors TFIIS, elongin A, CRSP70, conserved; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.19734.3.A1_s_at	A	A1TS	POPTR_0016s03310	POPTR_0016s03310 (11)	scaffold_16:1714077-1714492(-) (11)	NA	NA	NA	AT5G05140.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os05g34210.1	expressed protein	Medtr7g106190.2	"Transcription factors TFIIS, elongin A, CRSP70, conserved; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.19737.1.A1_at	A	A1TS	POPTR_0001s30710	POPTR_0001s30710 (10)	scaffold_1:29179358-29180451(-) (10)	NA	Q9C6D2	Methylthioribose kinase	AT1G49820.1	S-methyl-5-thioribose kinase 	LOC_Os04g57400.1	"methylthioribose kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19740.1.A1_at	A	A1TS	POPTR_0005s26650	POPTR_0005s26650 (11)	scaffold_5:24575170-24575702(+) (11)	NA	Q9XHM1	Eukaryotic translation initiation factor 3 subunit C	AT3G56150.2	eukaryotic translation initiation factor 3C 	LOC_Os07g03230.2	"eukaryotic translation initiation factor 3 subunit C, putative, expressed"	Medtr7g143620.1	"Proteasome component region PCI; Eukaryotic translation initiation factor 3 subunit 8, C-terminal; Eukaryotic translation initiation factor 3 subunit 8, N-terminal; Winged helix repressor DNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	GO:0005852|eukaryotic translation initiation factor 3 complex
PtpAffx.19746.1.S1_at	A	A1TS	POPTR_0001s35510	POPTR_0001s35510 (11)	scaffold_1:33853414-33853815(-) (11)	NA	Q02527	"Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase"	AT3G27540.1	"beta-1,4-N-acetylglucosaminyltransferase family protein "	LOC_Os02g38140.1	"glycosyl transferase family 17 protein, putative, expressed"	Medtr3g143490.1	"Glycosyl transferase, family 17 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003830|""beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity"""	GO:0016020|membrane
PtpAffx.1975.1.S1_s_at	A	A1TS	POPTR_0002s24790	POPTR_0002s24790 (11)	scaffold_2:22052259-22052712(+) (11)	NA	Q9LSG3	Galacturonosyltransferase 8	AT3G25140.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os02g29530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g062010.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.19752.1.S1_at	A	A1TS	POPTR_0016s09610	POPTR_0016s09610 (11)	scaffold_16:7606686-7607599(-) (11)	NA	A5VFP2	Acylphosphatase	AT5G03370.1	acylphosphatase family 	LOC_Os06g15390.1	"acylphosphatase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19778.1.S1_at	A	A1TS	POPTR_0005s06020	POPTR_0005s06020 (10)	scaffold_5:3954793-3955109(-) (10)	NA	NA	NA	AT2G13690.1	"PRLI-interacting factor, putative "	LOC_Os07g15600.1	"H-BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	Medtr3g143480.1	"PRLI-interacting factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19798.1.S1_s_at	A	A1TS	POPTR_0006s07240	POPTR_0006s07240 (11)	scaffold_6:5185018-5185805(-) (11)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.1980.1.S1_a_at	A	A1TS	POPTR_0001s41760	POPTR_0001s41760 (11)	scaffold_1:41453557-41454549(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g37570.1	expressed protein	Medtr2g095310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1980.3.A1_a_at	A	A1TS	POPTR_0001s41760	POPTR_0001s41760 (11)	scaffold_1:41453728-41454549(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g37570.1	expressed protein	Medtr2g095310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19801.1.A1_at	A	A1TS	POPTR_0005s04780	POPTR_0005s04780 (11)	scaffold_5:3200155-3200497(+) (11)	NA	NA	NA	AT3G05100.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g47150.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1985.1.A1_a_at	A	A1TS	POPTR_0006s03880	POPTR_0006s03880 (11)	scaffold_6:2599293-2599667(-) (11)	NA	NA	NA	AT3G56750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41150.2); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g25110.1	expressed protein	Medtr4g155950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1985.2.S1_a_at	A	A2TS	POPTR_0006s03880	POPTR_0016s03480 (9)//POPTR_0006s03880 (9)	scaffold_16:1859144-1859186(+) (9)//scaffold_6:2599482-2599524(-) (9)	NA	NA	NA	AT3G56750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41150.2); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g25110.1	expressed protein	Medtr4g155950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1985.2.S1_at	A	A1TS	POPTR_0016s03480	POPTR_0016s03480 (11)	scaffold_16:1859240-1859635(+) (11)	NA	NA	NA	AT3G56750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41150.2); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g25110.1	expressed protein	Medtr4g155950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1986.1.S1_at	A	A1TS	POPTR_0007s04800	POPTR_0007s04800 (9)	scaffold_7:2991168-2991875(-) (9)//scaffold_7:3001597-3002301(-) (9)	NA	Q0IU52	Aspartic proteinase Asp1	AT4G33490.2	Eukaryotic aspartyl protease family protein 	LOC_Os12g07780.2	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr4g143400.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1987.1.S1_at	A	A1TS	POPTR_0003s13500	POPTR_0003s13500 (10)	scaffold_3:13868420-13869151(-) (10)	NA	NA	NA	NA	NA	LOC_Os01g12230.1	"peptidase C45, acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase, putative, expressed"	NA	NA	GO:0042318|penicillin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process	NA	NA
PtpAffx.1987.2.A1_at	A	A1TS	POPTR_0003s13490	POPTR_0003s13490 (11)	scaffold_3:13868034-13868423(+) (11)	NA	NA	NA	AT5G41650.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os06g06420.1	"glyoxalase/bleomycin resistance protein/dioxygenase, putative, expressed"	Medtr5g009860.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1988.1.S1_at	A	A1TS	POPTR_0013s05580	POPTR_0013s05580 (11)	scaffold_13:3986070-3986705(+) (11)	NA	P50159	TATA-box-binding protein 2	AT1G55520.2	TATA binding protein 2 	LOC_Os12g39070.1	"TATA-binding protein, putative, expressed"	Medtr8g136970.1	TATA-box binding 	"GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003702|RNA polymerase II transcription factor activity	NA
PtpAffx.1988.2.A1_at	A	A1TS	POPTR_0019s04890	POPTR_0019s04890 (11)	scaffold_19:5121706-5121917(-) (11)	NA	P26357	TATA-box-binding protein	AT1G55520.2	TATA binding protein 2 	LOC_Os12g39070.1	"TATA-binding protein, putative, expressed"	Medtr8g136970.1	TATA-box binding 	"GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003702|RNA polymerase II transcription factor activity	NA
PtpAffx.1988.3.S1_at	A	A1MS	POPTR_0019s04890	POPTR_0019s04890 (11)	scaffold_19:5126191-5126370(-) (11)	NA	P26357	TATA-box-binding protein	AT1G55520.2	TATA binding protein 2 	LOC_Os12g39070.1	"TATA-binding protein, putative, expressed"	Medtr8g136970.1	TATA-box binding 	"GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003702|RNA polymerase II transcription factor activity	NA
PtpAffx.19891.1.S1_at	A	A1TS	POPTR_0010s24510	POPTR_0010s24510 (9)	scaffold_10:20701845-20701931(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19892.1.S1_at	A	A1TS	POPTR_0010s01670	POPTR_0010s01670 (11)	scaffold_10:1862977-1863276(+) (11)	NA	NA	NA	AT3G06890.1	unknown protein; Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g138610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19893.1.S1_at	A	A1TS	POPTR_0006s21580	POPTR_0006s21580 (9)	scaffold_6:20632048-20632502(+) (9)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19895.1.S1_at	A	A1TS	POPTR_0012s10520	POPTR_0012s10520 (11)	scaffold_12:11271300-11272439(-) (11)	NA	Q9XGY4	Mitochondrial import inner membrane translocase subunit Tim8	AT5G50810.1	translocase inner membrane subunit 8 	LOC_Os08g42380.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr3g151020.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
PtpAffx.19931.1.S1_at	A	A1TS	POPTR_0002s24670	POPTR_0002s24670 (11)	scaffold_2:21957489-21957926(-) (11)	NA	NA	NA	AT3G07190.1	B-cell receptor-associated protein 31-like  	LOC_Os03g63110.1	"prefoldin, putative, expressed"	Medtr4g064750.1	B-cell receptor-associated 31-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19948.1.S1_at	A	A1TS	POPTR_0005s18570	POPTR_0005s18570 (11)	scaffold_5:16811591-16812579(-) (11)	NA	Q06396	ADP-ribosylation factor 1	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr5g016470.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.19954.1.S1_a_at	A	A1TS	POPTR_0014s16780	POPTR_0014s16780 (10)	scaffold_14:12858888-12859086(+) (11)	NA	NA	NA	AT3G07660.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os09g08670.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g077880.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19954.1.S1_at	A	A1TS	POPTR_0014s16780	POPTR_0014s16780 (11)	scaffold_14:12858573-12858830(+) (11)	NA	NA	NA	AT3G07660.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os09g08670.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g077880.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19954.2.S1_at	A	A1TS	POPTR_0008s09420	POPTR_0008s09420 (10)	scaffold_8:5835783-5836297(+) (10)	NA	Q0P457	Protein KTI12 homolog	AT1G13870.1	calmodulin binding;purine nucleotide binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19954.3.A1_at	A	A1TA	POPTR_0008s09420	POPTR_0008s09420 (11)	scaffold_8:5835631-5835911(-) (11)	NA	Q0P457	Protein KTI12 homolog	AT1G13870.1	calmodulin binding;purine nucleotide binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19954.4.S1_a_at	A	A1TS	POPTR_0014s16780	POPTR_0014s16780 (11)	scaffold_14:12856789-12857034(+) (11)	NA	NA	NA	AT3G07660.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os09g08670.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g077880.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19956.2.S1_at	A	A1TS	POPTR_0005s07890	POPTR_0005s07890 (9)	scaffold_5:5410137-5410294(-) (9)	NA	O50401	Trehalose-phosphate phosphatase	AT5G65140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g31630.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr5g072070.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.1996.1.S1_s_at	A	A1TS	POPTR_0007s15290	POPTR_0007s15290 (11)	scaffold_7:14876241-14878695(+) (11)	NA	Q59536	Protease 2	AT1G50380.1	Prolyl oligopeptidase family protein 	LOC_Os06g51410.1	"OsPOP15 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.19961.1.S1_a_at	A	A1TS	POPTR_0003s00890	POPTR_0003s00890 (11)	scaffold_3:731335-732557(+) (11)	POPTR_0004s23770 (8)	Q8L7G0	Auxin response factor 1	AT1G59750.4	auxin response factor 1 	LOC_Os04g36054.1	"auxin response factor 9, putative, expressed"	Medtr2g005100.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.19965.1.A1_s_at	A	A1TS	POPTR_0018s10800	POPTR_0018s10800 (11)	scaffold_18:11663390-11664597(-) (11)	NA	NA	NA	AT5G57770.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os04g42040.1	expressed protein	Medtr8g127670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19965.3.A1_at	A	A1TA	POPTR_0018s10800	POPTR_0018s10800 (11)	scaffold_18:11664573-11664928(+) (11)	NA	NA	NA	AT5G57770.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os04g42040.1	expressed protein	Medtr8g127670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1997.1.A1_at	A	A1TS	POPTR_0001s28450	POPTR_0001s28450 (11)	scaffold_1:27224710-27226419(-) (11)	NA	Q5R628	U6 snRNA-associated Sm-like protein LSm5	AT5G48870.1	Small nuclear ribonucleoprotein family protein 	LOC_Os05g32310.1	"LSM domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1997.1.A1_x_at	A	A1TS	POPTR_0001s28450	POPTR_0001s28450 (11)	scaffold_1:27224743-27226419(-) (11)	NA	Q5R628	U6 snRNA-associated Sm-like protein LSm5	AT5G48870.1	Small nuclear ribonucleoprotein family protein 	LOC_Os05g32310.1	"LSM domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1999.1.A1_at	A	A1TS	POPTR_0013s14360	POPTR_0013s14360 (9)	scaffold_13:14574759-14575128(-) (9)	NA	NA	NA	AT4G28230.1	unknown protein; Has 444 Blast hits to 358 proteins in 107 species: Archae - 0; Bacteria - 20; Metazoa - 179; Fungi - 26; Plants - 38; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink). 	NA	NA	Medtr3g005120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19997.1.A1_at	A	A1TS	POPTR_0003s04650	POPTR_0003s04650 (11)	scaffold_3:5563344-5564671(-) (11)	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os01g53880.6	"OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.200003.1.S1_at	A	A1TS	POPTR_0001s03760	POPTR_0001s03760 (11)	scaffold_1:3045066-3045654(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G55570.1	SKU5  similar 12 	LOC_Os05g40740.3	"monocopper oxidase, putative, expressed"	Medtr4g115270.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.200004.1.S1_at	A	A1TS	POPTR_0001s03770	POPTR_0001s03770 (11)	scaffold_1:3055738-3056311(+) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G55570.1	SKU5  similar 12 	LOC_Os05g40740.3	"monocopper oxidase, putative, expressed"	Medtr4g115270.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.200005.1.S1_at	A	A1TS	POPTR_0001s03800	POPTR_0001s03800 (11)	scaffold_1:3071127-3071715(-) (11)	NA	O81635	Kinesin-4	AT1G55550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g15540.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.200006.1.S1_at	A	A1TS	POPTR_0001s03820	POPTR_0001s03820 (11)	scaffold_1:3097462-3097965(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g15550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200007.1.S1_at	A	A1TS	POPTR_0001s03830	POPTR_0001s03830 (11)	scaffold_1:3102519-3103209(+) (11)	NA	O80622	Expansin-A15	AT2G03090.1	expansin A15 	LOC_Os02g51040.1	"expansin precursor, putative, expressed"	Medtr4g111750.1	"Major pollen allergen Lol pI; Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200008.1.S1_at	A	A1TS	POPTR_0001s03840	POPTR_0001s03840 (11)	scaffold_1:3108648-3109124(+) (11)	NA	NA	NA	AT1G55540.1	Nuclear pore complex protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20001.1.S1_at	A	A1TS	POPTR_0010s08930	POPTR_0010s08930 (11)	scaffold_10:9726747-9727785(-) (11)	NA	NA	NA	AT5G43750.1	NAD(P)H dehydrogenase 18 	LOC_Os01g70400.1	expressed protein	Medtr5g045470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200010.1.S1_at	A	A1TS	POPTR_0001s03870	POPTR_0001s03870 (11)	scaffold_1:3114531-3114721(+) (11)	NA	NA	NA	AT1G55535.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g12220.1	conserved hypothetical protein	Medtr4g115220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200011.1.S1_at	A	A1TS	POPTR_0001s03900	POPTR_0001s03900 (11)	scaffold_1:3129003-3129602(-) (11)	NA	O08795	Glucosidase 2 subunit beta	AT5G56360.1	calmodulin-binding protein 	LOC_Os01g16970.1	"glucosidase II beta subunit-like domain containing protein, expressed"	Medtr4g115150.1	Glucosidase II beta subunit-like 	NA	GO:0005515|protein binding	NA
PtpAffx.200012.1.S1_at	A	A1TS	POPTR_0001s03950	POPTR_0001s03950 (10)	scaffold_1:3142821-3143002(-) (11)	NA	O65351	Subtilisin-like protease	AT4G26330.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os03g06290.1	"OsSub27 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.200012.1.S1_s_at	A	A1TS	POPTR_0001s03950	POPTR_0001s03950 (11)	scaffold_1:3142439-3142828(-) (11)	NA	O65351	Subtilisin-like protease	AT4G26330.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os03g06290.1	"OsSub27 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.200013.1.S1_at	A	A1TS	POPTR_0001s03960	POPTR_0001s03960 (11)	scaffold_1:3154323-3154757(+) (11)	NA	Q9FM85	Probable receptor-like protein kinase At5g56460	AT5G56460.1	Protein kinase superfamily protein 	LOC_Os03g06330.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr4g136940.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200014.1.S1_at	A	A1TS	POPTR_0001s03990	POPTR_0001s03990 (11)	scaffold_1:3175217-3176341(+) (11)	NA	Q9LVC3	Pumilio homolog 12	AT5G56510.1	pumilio 12 	LOC_Os11g37090.1	"pumilio-family RNA binding repeat domain containing protein, expressed"	Medtr5g072550.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.200015.1.S1_at	A	A1TS	POPTR_0001s04020	POPTR_0001s04020 (11)	scaffold_1:3181380-3185116(-) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33620.1	"cytochrome P450 domain containing protein, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.200016.1.S1_at	A	A1TS	POPTR_0001s04040	POPTR_0001s04040 (11)	scaffold_1:3203712-3204125(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT4G04220.1	receptor like protein 46 	LOC_Os02g06600.1	"receptor-like protein kinase 2 precursor, putative"	AC225530_8.1	"Leucine-rich repeat, typical subtype AC225530.6 109574-106712 E EGN_Mt090430 200"	NA	GO:0005515|protein binding	NA
PtpAffx.200017.1.S1_s_at	A	A1TS	POPTR_0001s04050	POPTR_0001s04050 (11)	scaffold_1:3206455-3207011(-) (11)	NA	NA	NA	AT3G13480.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200018.1.S1_at	A	A1TS	POPTR_0001s04080	POPTR_0001s04080 (10)	scaffold_1:3220755-3221300(+) (11)	NA	P74003	Protein methyltransferase hemK homolog	AT5G64150.1	RNA methyltransferase family protein 	LOC_Os12g41830.1	"Methyltransferase small domain containing protein, expressed"	AC235488_33.1	Modification methylase HemK; Methyltransferase small AC235488.1 154102-150229 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200019.1.S1_at	A	A1TS	POPTR_0001s04090	POPTR_0001s04090 (11)	scaffold_1:3222733-3222920(+) (11)	NA	Q2T9S3	DNA-directed RNA polymerase III subunit RPC6	AT5G23710.1	DNA binding;DNA-directed RNA polymerases 	LOC_Os06g40110.1	"RNA polymerase Rpc34 subunit family protein, expressed"	Medtr7g020650.1	Copper fist DNA-binding; RNA polymerase Rpc34 subunit 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.200019.1.S1_x_at	A	A1TS	POPTR_0001s04090	POPTR_0001s04090 (11)	scaffold_1:3222549-3222920(+) (11)	NA	Q2T9S3	DNA-directed RNA polymerase III subunit RPC6	AT5G23710.1	DNA binding;DNA-directed RNA polymerases 	LOC_Os06g40110.1	"RNA polymerase Rpc34 subunit family protein, expressed"	Medtr7g020650.1	Copper fist DNA-binding; RNA polymerase Rpc34 subunit 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.200020.1.S1_at	A	A1TS	POPTR_0001s04110	POPTR_0001s04110 (11)	scaffold_1:3239954-3242728(+) (11)	NA	Q92177	Calpain-3	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
PtpAffx.200021.1.S1_at	A	A1TS	POPTR_0001s04110	POPTR_0001s04110 (11)	scaffold_1:3243947-3244494(+) (11)	NA	Q92177	Calpain-3	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
PtpAffx.200022.1.S1_at	A	A1MS	POPTR_0001s04110	POPTR_0001s04110 (10)	scaffold_1:3247206-3247426(+) (10)	NA	Q92177	Calpain-3	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
PtpAffx.200023.1.S1_at	A	A1TS	POPTR_0001s04110	POPTR_0001s04110 (11)	scaffold_1:3248100-3248440(+) (11)	NA	Q92177	Calpain-3	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
PtpAffx.200024.1.S1_at	A	A1TS	POPTR_0001s04110	POPTR_0001s04110 (9)	scaffold_1:3248870-3249072(+) (11)	NA	Q92177	Calpain-3	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
PtpAffx.200025.1.S1_at	A	A1TS	POPTR_0001s04160	POPTR_0001s04160 (11)	scaffold_1:3297849-3298297(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200026.1.S1_at	A	A1TS	POPTR_0001s04190	POPTR_0001s04190 (11)	scaffold_1:3313562-3314147(-) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os07g10410.1	AP2 domain containing protein	Medtr7g102550.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200027.1.S1_at	A	A1TS	POPTR_0001s04210	POPTR_0001s04210 (11)	scaffold_1:3331727-3332596(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.200028.1.S1_at	A	A1TS	POPTR_0001s04260	POPTR_0001s04260 (9)	scaffold_1:3371328-3373880(+) (11)	NA	Q84MC2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8	AT5G11950.2	Putative lysine decarboxylase family protein 	LOC_Os01g51210.1	"uncharacterized protein PA4923, putative, expressed"	Medtr1g019920.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200028.1.S1_x_at	A	A1TS	POPTR_0001s04260	POPTR_0001s04260 (9)	scaffold_1:3371169-3373880(+) (11)	NA	Q84MC2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8	AT5G11950.2	Putative lysine decarboxylase family protein 	LOC_Os01g51210.1	"uncharacterized protein PA4923, putative, expressed"	Medtr1g019920.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200029.1.S1_at	A	A1TS	POPTR_0001s04280	POPTR_0001s04280 (10)	scaffold_1:3383597-3384417(+) (10)	NA	NA	NA	AT3G13600.1	calmodulin-binding family protein 	LOC_Os10g27170.1	"calmodulin-binding protein, putative, expressed"	Medtr3g105660.1	"calmodulin-binding family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200030.1.S1_at	A	A1TS	POPTR_0001s04300	POPTR_0001s04300 (11)	scaffold_1:3402311-3404514(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200031.1.S1_at	A	A1TS	POPTR_0001s04310	POPTR_0001s04310 (11)	scaffold_1:3405365-3405961(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134180.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity"	NA
PtpAffx.200032.1.S1_at	A	A1TS	POPTR_0001s04320	POPTR_0001s04320 (11)	scaffold_1:3411665-3412614(-) (11)	NA	P93756	G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1	AT2G41890.1	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr7g110670.1	"Apple; Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.200033.1.S1_at	A	A1TS	POPTR_0001s04330	POPTR_0001s04330 (11)	scaffold_1:3419818-3420479(-) (11)	NA	NA	NA	AT3G13600.1	calmodulin-binding family protein 	LOC_Os07g43970.1	"calmodulin-binding protein, putative, expressed"	Medtr4g134270.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200034.1.S1_x_at	A	A1TS	POPTR_0001s04350	POPTR_0001s04350 (11)	scaffold_1:3452578-3454056(+) (11)	NA	Q8WXF0	Serine/arginine-rich splicing factor 12	AT3G13570.1	SC35-like splicing factor 30A 	LOC_Os03g25770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.200035.1.S1_at	A	A1TS	POPTR_0001s04380	POPTR_0001s04380 (11)	scaffold_1:3481228-3481375(+) (11)//scaffold_1:3488708-3488842(+) (10)	NA	Q8Z1R0	Acetyl-coenzyme A synthetase	AT1G55320.1	acyl-activating enzyme 18 	LOC_Os03g59080.1	"AMP-binding enzyme, putative, expressed"	Medtr4g134030.1	"AMP-dependent synthetase and ligase; Legume lectin, alpha "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.200036.1.S1_at	A	A1TS	POPTR_0001s04410	POPTR_0001s04410 (11)	scaffold_1:3481858-3489518(-) (11)//scaffold_1:3489325-3489567(-) (10)	POPTR_0001s04390 (7)	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT3G13610.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g058940.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.200037.1.S1_at	A	A1TS	POPTR_0001s04430	POPTR_0001s04430 (11)	scaffold_1:3508849-3509460(+) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G55290.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g058940.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.200038.1.S1_at	A	A1TS	POPTR_0001s04440	POPTR_0001s04440 (11)	scaffold_1:3509944-3510461(-) (11)	NA	NA	NA	AT3G13620.1	Amino acid permease family protein 	LOC_Os03g25920.1	"amino acid permease family protein, putative"	Medtr4g133980.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200039.1.S1_at	A	A1TS	POPTR_0001s04450	POPTR_0001s04450 (11)	scaffold_1:3513391-3513636(-) (11)	NA	O34739	Serine/threonine exchanger SteT	AT3G13620.1	Amino acid permease family protein 	LOC_Os03g25920.1	"amino acid permease family protein, putative"	Medtr5g073920.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200040.1.S1_at	A	A1TS	POPTR_0001s04460	POPTR_0001s04460 (11)	scaffold_1:3515669-3516601(-) (11)	NA	P18632	Sugi basic protein	AT5G09280.1	Pectin lyase-like superfamily protein 	LOC_Os08g18970.1	pectate lyase family protein	Medtr8g094000.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200041.1.S1_s_at	A	A2TS	POPTR_1207s00200	POPTR_1207s00200 (11)//POPTR_0001s04470 (9)	scaffold_1:3522703-3523568(-) (10)//scaffold_1207:843-1683(-) (11)	NA	NA	NA	AT2G20142.1	Toll-Interleukin-Resistance (TIR) domain family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200042.1.S1_at	A	A1MS	POPTR_0001s04480	POPTR_0001s04480 (11)	scaffold_1:3528767-3529120(-) (11)//scaffold_1207:6213-6566(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200043.1.S1_at	A	A1TS	POPTR_0001s04510	POPTR_0001s04510 (9)	scaffold_1:3546050-3546125(+) (9)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.200043.1.S1_x_at	A	A1TS	POPTR_0001s04510	POPTR_0001s04510 (11)	scaffold_1:3546054-3546405(+) (11)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.200044.1.S1_at	A	A1TS	POPTR_0001s04600	POPTR_0001s04600 (11)	scaffold_1:3582721-3583546(+) (11)	NA	NA	NA	AT1G11880.1	"transferases, transferring hexosyl groups "	LOC_Os12g31480.1	"GPI mannosyltransferase 2, putative, expressed"	Medtr4g114500.1	Protein of unknown function DUF409 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200046.1.S1_at	A	A1TS	POPTR_0001s04620	POPTR_0001s04620 (11)	scaffold_1:3595089-3595769(-) (11)	NA	Q9C895	E3 ubiquitin-protein ligase BRE1-like 2	AT1G55250.1	histone mono-ubiquitination 2 	LOC_Os10g41590.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC233662_35.1	"E3 ubiquitin-protein ligase BRE1-like 2, related AC233662.1 173535-167958 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200047.1.S1_at	A	A1TS	POPTR_0001s04630	POPTR_0001s04630 (11)	scaffold_1:3602732-3603205(-) (11)	NA	NA	NA	AT1G55230.1	Family of unknown function (DUF716)  	LOC_Os09g27260.1	"plant viral response family protein, putative, expressed"	Medtr2g026770.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200049.1.S1_at	A	A1TS	POPTR_0001s04700	POPTR_0001s04700 (10)	scaffold_1:3633563-3634668(-) (10)	NA	Q94F88	DNA (cytosine-5)-methyltransferase CMT3	AT1G69770.1	chromomethylase 3 	LOC_Os03g12570.1	expressed protein	AC233109_26.1	Chromo; Bromo adjacent region; C-5 cytosine-specific DNA methylase AC233109.4 111187-105639 E EGN_Mt090430 200	GO:0006306|DNA methylation||GO:0044260|cellular macromolecule metabolic process||GO:0006333|chromatin assembly or disassembly||GO:0044281|small molecule metabolic process	GO:0003677|DNA binding||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.200050.1.S1_at	A	A1TS	POPTR_0001s04720	POPTR_0001s04720 (11)	scaffold_1:3657449-3657625(+) (11)	NA	NA	NA	AT2G34860.2	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os08g36140.1	expressed protein	Medtr1g146480.1	"DnaJ-like zinc-finger protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200051.1.S1_at	A	A1TS	POPTR_0001s04730	POPTR_0001s04730 (9)	scaffold_1:3658199-3659215(-) (9)	NA	Q10PP8	Metal tolerance protein 4	AT3G58060.1	Cation efflux family protein 	LOC_Os03g12530.1	"cation efflux family protein, putative, expressed"	Medtr3g083790.1	Cation efflux protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200052.1.S1_at	A	A1TS	POPTR_0001s04760	POPTR_0001s04760 (11)	scaffold_1:3669856-3670988(-) (11)	NA	P54453	Uncharacterized protein yqeH	AT4G10620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g19980.1	"GTP binding protein, putative, expressed"	Medtr4g101260.1	"GTP binding, related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.200053.1.S1_at	A	A1TS	POPTR_0001s04770	POPTR_0001s04770 (11)	scaffold_1:3673853-3674630(-) (11)	NA	Q9M2P4	E3 ubiquitin-protein ligase SINAT2	AT3G58040.1	seven in absentia of Arabidopsis 2 	LOC_Os02g03620.1	"seven in absentia protein family domain containing protein, expressed"	Medtr7g112270.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.200054.1.S1_at	A	A1TS	POPTR_0001s04810	POPTR_0001s04810 (11)	scaffold_1:3693060-3693809(+) (11)	NA	NA	NA	AT5G06700.1	Plant protein of unknown function (DUF828) 	LOC_Os06g10560.1	"leaf senescence related protein, putative, expressed"	Medtr2g132830.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200055.1.S1_at	A	A1TS	POPTR_0001s04830	POPTR_0001s04830 (11)	scaffold_1:3709693-3710627(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200056.1.S1_at	A	A1MS	POPTR_0001s04890	POPTR_0001s04890 (9)	scaffold_1:3754296-3755026(-) (9)	NA	Q42517	Peroxidase N	AT5G19890.1	Peroxidase superfamily protein 	NA	NA	Medtr2g046610.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200057.1.S1_at	A	A1TS	POPTR_0001s04900	POPTR_0001s04900 (11)	scaffold_1:3757804-3759477(+) (11)	NA	Q8LAP6	"Probable plastid-lipid-associated protein 12, chloroplastic"	AT1G51110.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os07g28790.1	"PAP fibrillin family domain containing protein, expressed"	Medtr1g146620.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.200058.1.S1_at	A	A1TS	POPTR_0001s04940	POPTR_0001s04940 (11)	scaffold_1:3771200-3772651(-) (11)	NA	Q9SFU6	Callose synthase 9	AT3G07160.1	glucan synthase-like 10 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.200059.1.S1_at	A	A1TS	POPTR_0001s04960	POPTR_0001s04960 (11)	scaffold_1:3808632-3809634(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200061.1.S1_at	A	A1TS	POPTR_0001s04980	POPTR_0001s04980 (11)	scaffold_1:3840091-3841224(+) (11)	NA	Q681N2	U-box domain-containing protein 15	AT5G42340.1	Plant U-Box 15 	LOC_Os02g07190.1	expressed protein	Medtr7g005630.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.200062.1.S1_at	A	A1TS	POPTR_0001s05010	POPTR_0001s05010 (11)	scaffold_1:3862716-3863245(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200063.1.S1_at	A	A1TS	POPTR_0001s05020	POPTR_0001s05020 (11)	scaffold_1:3871274-3871796(-) (11)	NA	P48630	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.200064.1.S1_at	A	A1TS	POPTR_0001s05030	POPTR_0001s05030 (11)	scaffold_1:3881351-3881672(+) (11)	NA	Q9ZPV5	Nucleolar complex protein 2 homolog	AT2G18220.1	Noc2p family 	LOC_Os10g35280.1	"nucleolar complex protein 2, putative, expressed"	Medtr1g140790.1	Protein of unknown function UPF0120 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200065.1.S1_at	A	A1TS	POPTR_0001s05040	POPTR_0001s05040 (11)	scaffold_1:3884139-3885505(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200066.1.S1_at	A	A1TS	POPTR_0001s05080	POPTR_0001s05080 (11)	scaffold_1:3904725-3905664(-) (11)	NA	NA	NA	AT1G73240.1	CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g45920.1	expressed protein	Medtr8g008550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200067.1.S1_at	A	A1TS	POPTR_0001s05110	POPTR_0001s05110 (11)	scaffold_1:3939719-3940089(+) (11)	NA	NA	NA	AT3G57980.1	DNA-binding bromodomain-containing protein 	LOC_Os09g31454.1	"MYB family transcription factor, putative, expressed"	Medtr2g071440.1	Myb transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200068.1.S1_at	A	A1TS	POPTR_0001s05120	POPTR_0001s05120 (11)	scaffold_1:3942684-3943185(+) (11)	NA	NA	NA	AT3G57980.1	DNA-binding bromodomain-containing protein 	NA	NA	Medtr2g071430.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200069.1.S1_s_at	A	A1TS	POPTR_0001s05130	POPTR_0001s05130 (11)	scaffold_1:3945605-3945650(+) (11)//scaffold_10:6014884-6014929(+) (11)//scaffold_19:6107159-6107204(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20007.1.A1_at	A	A1TS	POPTR_0016s13300	POPTR_0016s13300 (10)	scaffold_16:12501374-12501838(+) (10)	NA	Q55DY8	Mitoferrin	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200070.1.S1_at	A	A1TS	POPTR_0001s05150	POPTR_0001s05150 (10)	scaffold_1:3951164-3952745(-) (11)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.2	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200070.1.S1_x_at	A	A1TS	POPTR_0001s05150	POPTR_0001s05150 (10)	scaffold_1:3951164-3952745(-) (11)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.2	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200071.1.S1_at	A	A1TS	POPTR_0001s05170	POPTR_0001s05170 (11)	scaffold_1:3962718-3962819(+) (11)	NA	Q9SXP7	Octanoyltransferase	AT1G04640.2	lipoyltransferase 2 	LOC_Os03g20560.1	"biotin--protein ligase, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0003824|catalytic activity	NA
PtpAffx.200071.1.S1_s_at	A	A1TS	POPTR_0001s05170	POPTR_0001s05170 (11)	scaffold_1:3962267-3962595(+) (11)	NA	Q9SXP7	Octanoyltransferase	AT1G04640.2	lipoyltransferase 2 	LOC_Os03g20560.1	"biotin--protein ligase, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0003824|catalytic activity	NA
PtpAffx.200073.1.S1_s_at	A	A2TS	POPTR_0001s05230	POPTR_0001s05250 (11)//POPTR_0001s05230 (11)	scaffold_1:4010665-4011060(+) (11)//scaffold_1:4019175-4019570(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12560.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011860.1	Curculin-like (mannose-binding) lectin 	NA	GO:0005529|sugar binding	NA
PtpAffx.200074.1.S1_s_at	A	A1TS	POPTR_0001s03360	POPTR_0001s03360 (11)	scaffold_1:2737236-2737863(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200075.1.S1_at	A	A1TS	POPTR_0001s03350	POPTR_0001s03350 (11)	scaffold_1:2729031-2730040(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200076.1.S1_at	A	A1TS	POPTR_0001s03310	POPTR_0001s03310 (11)	scaffold_1:2702117-2704061(+) (11)	NA	NA	NA	AT1G79710.1	Major facilitator superfamily protein 	LOC_Os06g08750.1	"integral membrane transporter family protein, putative, expressed"	Medtr1g017050.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200077.1.S1_at	A	A1TS	POPTR_0001s03300	POPTR_0001s03300 (9)	scaffold_1:2691338-2693978(-) (9)	POPTR_0003s18350 (6)	Q94AN4	AP2-like ethylene-responsive transcription factor At1g16060	AT1G16060.1	ARIA-interacting double AP2 domain protein 	LOC_Os09g25600.1	"AP2 domain containing protein, expressed"	Medtr8g144720.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200077.1.S1_s_at	A	A1TS	POPTR_0001s03300	POPTR_0001s03300 (11)	scaffold_1:2690916-2691306(-) (11)	NA	Q94AN4	AP2-like ethylene-responsive transcription factor At1g16060	AT1G16060.1	ARIA-interacting double AP2 domain protein 	LOC_Os09g25600.1	"AP2 domain containing protein, expressed"	Medtr8g144720.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200078.1.S1_at	A	A1TS	POPTR_0001s03290	POPTR_0001s03290 (11)	scaffold_1:2685523-2686179(+) (11)	NA	Q9S9M8	Tubby-like protein 8	AT1G16070.1	tubby like protein 8 	LOC_Os02g08310.1	"tubby, putative, expressed"	AC233655_35.1	Tubby AC233655.2 211279-212971 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200080.1.S1_x_at	A	A1TS	POPTR_0001s03240	POPTR_0001s03240 (11)	scaffold_1:2662837-2662962(-) (11)	NA	Q8RY17	Wall-associated receptor kinase-like 22	AT1G79670.2	Wall-associated kinase family protein 	LOC_Os02g42150.1	"OsWAK14 - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200081.1.S1_at	A	A1TS	POPTR_1809s00200	POPTR_1809s00200 (9)	scaffold_1:5763772-5764273(-) (9)//scaffold_1809:1789-2542(+) (11)	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT1G16130.1	wall associated kinase-like 2 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.200083.1.S1_s_at	A	A2TS	POPTR_0001s07590	POPTR_0001s07690 (11)//POPTR_0001s07590 (11)	scaffold_1:5739597-5739810(-) (11)//scaffold_1:5812085-5812298(-) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os02g56420.1	"OsWAK23 - OsWAK short gene, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	NA	GO:0004674|protein serine/threonine kinase activity	GO:0016021|integral to membrane
PtpAffx.200088.1.S1_at	A	A1TS	POPTR_0001s07500	POPTR_0001s07500 (10)	scaffold_1:5623944-5626663(-) (10)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT1G79640.1	Protein kinase superfamily protein 	LOC_Os02g54900.1	"STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g023360.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200090.1.S1_at	A	A1TS	POPTR_0001s07490	POPTR_0001s07490 (10)	scaffold_1:5618405-5619089(-) (11)	NA	Q9LTW9	Fasciclin-like arabinogalactan protein 14	AT3G12660.1	FASCICLIN-like arabinogalactan protein 14 precursor 	LOC_Os02g26320.1	"fasciclin-like arabinogalactan precursor protein, putative, expressed"	AC233655_31.1	Beta-Ig-H3/fasciclin AC233655.2 194118-193165 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200091.1.S1_at	A	A1TS	POPTR_0001s07440	POPTR_0001s07440 (11)	scaffold_1:5593197-5595253(+) (11)	NA	P93431	"Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic"	AT1G73110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g56320.1	"AAA-type ATPase family protein, putative, expressed"	AC233655_26.1	"AAA ATPase, central region AC233655.2 167789-172100 E EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.200092.1.S1_s_at	A	A1TS	POPTR_0001s07430	POPTR_0001s07430 (11)	scaffold_1:5584477-5585291(+) (11)	NA	Q4KLT0	Probable E3 ubiquitin-protein ligase RNF217	AT3G14250.1	RING/U-box superfamily protein 	LOC_Os08g35060.1	"protein binding protein, putative, expressed"	Medtr8g026380.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.200093.1.S1_at	A	A1TS	POPTR_0001s07340	POPTR_0001s07340 (11)	scaffold_1:5534143-5538330(+) (11)	NA	Q5ZLT0	Exportin-7	AT5G06120.2	ARM repeat superfamily protein 	LOC_Os03g42050.1	"exportin-7-A, putative, expressed"	Medtr3g163590.1	"Exportin-7-B, related "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.200094.1.S1_at	A	A1TS	POPTR_0001s07330	POPTR_0001s07330 (11)	scaffold_1:5510718-5511298(-) (11)	NA	Q0JIC2	Transcription factor GAMYB	AT5G06100.3	myb domain protein 33 	LOC_Os01g59660.2	"MYB family transcription factor, putative, expressed"	Medtr3g068960.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200095.1.S1_at	A	A1TS	POPTR_0001s07290	POPTR_0001s07290 (11)	scaffold_1:5488574-5489080(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200096.1.S1_at	A	A1TS	POPTR_0001s07270	POPTR_0001s07270 (9)	scaffold_1:5481793-5482357(+) (10)	NA	Q6Z8C8	Cyclin-dependent kinase F-4	AT4G19110.2	Protein kinase superfamily protein 	LOC_Os06g02550.2	"CPuORF21 - conserved peptide uORF-containing transcript, expressed"	Medtr5g027190.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200097.1.S1_at	A	A1TS	POPTR_0001s07260	POPTR_0001s07260 (10)	scaffold_1:5478095-5478645(-) (10)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200098.1.S1_at	A	A1TS	POPTR_0001s07250	POPTR_0001s07250 (9)	scaffold_1:5473745-5474372(-) (9)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200099.1.S1_s_at	A	A1TS	POPTR_0001s07230	POPTR_0001s07230 (11)	scaffold_1:5464585-5464935(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200100.1.S1_s_at	A	A1TS	POPTR_0001s07220	POPTR_0001s07220 (11)	scaffold_1:5461845-5462349(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200103.1.S1_at	A	A1TS	POPTR_0001s07210	POPTR_0001s07210 (11)	scaffold_1:5452387-5452816(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200104.1.S1_at	A	A1TS	POPTR_0001s07190	POPTR_0001s07190 (11)	scaffold_1:5447573-5448200(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200105.1.S1_s_at	A	A1TS	POPTR_0001s07180	POPTR_0001s07180 (11)	scaffold_1:5444164-5444718(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200107.1.S1_at	A	A1TS	POPTR_0001s07170	POPTR_0001s07170 (11)	scaffold_1:5439881-5440406(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200108.1.S1_at	A	A1TS	POPTR_0001s07150	POPTR_0001s07150 (11)	scaffold_1:5430688-5431908(+) (11)	NA	Q8UVK2	Transcription elongation factor SPT6	AT1G65440.1	global transcription factor group B1 	LOC_Os05g41510.1	"SH2 motif, putative, expressed"	AC233661_16.1	"Zinc finger, CCHC-type; RNA binding S1 AC233661.2 92271-86017 E EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.200109.1.S1_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5418872-5418909(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
PtpAffx.200110.1.S1_at	A	A1TS	POPTR_0001s07130	POPTR_0001s07130 (11)	scaffold_1:5409797-5410310(-) (11)	NA	Q9M5Q1	Galactoside 2-alpha-L-fucosyltransferase	AT2G03220.1	fucosyltransferase 1 	LOC_Os02g52630.1	"xyloglucan fucosyltransferase, putative, expressed"	Medtr1g112160.1	Xyloglucan fucosyltransferase 	GO:0071554|cell wall organization or biogenesis||GO:0042546|cell wall biogenesis	GO:0008107|galactoside 2-alpha-L-fucosyltransferase activity	GO:0016020|membrane
PtpAffx.200111.1.S1_s_at	A	A1TS	POPTR_0001s07090	POPTR_0001s07090 (11)	scaffold_1:5395173-5395428(-) (11)	POPTR_0001s07100 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200112.1.S1_at	A	A1TS	POPTR_0001s07060	POPTR_0001s07060 (11)	scaffold_1:5381954-5383452(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200113.1.S1_at	A	A1TS	POPTR_0001s06990	POPTR_0001s06990 (11)	scaffold_1:5342748-5346076(-) (11)	NA	Q9ZVJ3	65-kDa microtubule-associated protein 5	AT2G38720.1	microtubule-associated protein 65-5 	LOC_Os05g33890.1	"microtubule associated protein, putative, expressed"	Medtr8g044460.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200114.1.S1_at	A	A1TS	POPTR_0001s06960	POPTR_0001s06960 (11)	scaffold_1:5305970-5306491(+) (11)	NA	Q9FL42	Putative RING-H2 finger protein ATL69	AT5G07040.1	RING/U-box superfamily protein 	LOC_Os12g04130.1	OsFBO23 - F-box and other domain containing protein	AC235758_12.1	"Zinc finger, RING-type AC235758.1 57299-60764 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200115.1.S1_at	A	A1TS	POPTR_0001s06940	POPTR_0001s06940 (11)	scaffold_1:5299796-5300647(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g124870.1	"Auxin-induced protein 5NG4, related "	NA	NA	GO:0016020|membrane
PtpAffx.200116.1.S1_at	A	A1TS	POPTR_0001s06920	POPTR_0001s06920 (10)	scaffold_1:5287547-5288146(+) (11)	NA	Q9LRP6	"Pentatricopeptide repeat-containing protein At3g15590, mitochondrial"	AT5G06990.1	"Protein of unknown function, DUF617 "	LOC_Os01g59200.1	"DUF617 domain containing protein, expressed"	Medtr8g044040.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200117.1.S1_at	A	A1TS	POPTR_0001s06890	POPTR_0001s06890 (11)	scaffold_1:5264973-5265520(-) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr8g148310.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200118.1.S1_at	A	A1TS	POPTR_0001s06880	POPTR_0001s06880 (11)	scaffold_1:5262641-5263153(+) (11)	NA	Q500W7	GPI mannosyltransferase 1	AT5G22130.1	mannosyltransferase family protein 	LOC_Os03g46750.1	"GPI mannosyltransferase 1, putative, expressed"	Medtr8g043980.1	"Mannosyltransferase, DXD "	GO:0006506|GPI anchor biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.200119.1.S1_s_at	A	A2TS	POPTR_1527s00200	POPTR_1527s00200 (11)//POPTR_1527s00210 (11)	scaffold_1:5237006-5239744(-) (9)//scaffold_1527:126-941(-) (11)//scaffold_1527:2885-3700(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200120.1.S1_at	A	A1TS	POPTR_0001s06810	POPTR_0001s06810 (11)	scaffold_1:5206365-5207577(-) (11)	NA	Q9H9Y6	DNA-directed RNA polymerase I subunit RPA2	AT1G29940.1	nuclear RNA polymerase A2 	LOC_Os10g35290.1	"DNA-directed RNA polymerase I subunit RPA2, putative, expressed"	Medtr8g133890.1	"RNA polymerase I, Rpa2 specific; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.200121.1.S1_at	A	A1TS	POPTR_0001s06790	POPTR_0001s06790 (11)	scaffold_1:5201615-5202151(-) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr2g008370.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200123.1.S1_at	A	A1TS	POPTR_0001s06770	POPTR_0001s06770 (10)	scaffold_1:5190851-5191312(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200124.1.S1_at	A	A1TS	POPTR_0001s06740	POPTR_0001s06740 (11)	scaffold_1:5162839-5165165(-) (11)	NA	NA	NA	AT5G06970.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200125.1.S1_at	A	A1TS	POPTR_0001s06610	POPTR_0001s06610 (11)	scaffold_1:5080095-5080376(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os12g29280.1	"disease resistance protein RGA3, putative, expressed"	Medtr4g012320.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.200126.1.S1_at	A	A1TS	POPTR_0001s06600	POPTR_0001s06600 (11)	scaffold_1:5074472-5075058(+) (11)	NA	Q9FSB8	Chalcone synthase 2	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	GO:0009058|biosynthetic process	GO:0008415|acyltransferase activity	NA
PtpAffx.200127.1.S1_at	A	A1TS	POPTR_0001s06520	POPTR_0001s06520 (11)	scaffold_1:5015129-5016027(-) (11)	NA	Q9SFB8	Phosphatidylinositol-4-phosphate 5-kinase 6	AT3G07960.1	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os07g46490.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr1g068490.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.200128.1.S1_at	A	A1TS	POPTR_0001s06510	POPTR_0001s06510 (11)	scaffold_1:5012218-5012915(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200129.1.S1_at	A	A1MS	POPTR_0001s06500	POPTR_0001s06500 (9)	scaffold_1:5008855-5009941(+) (9)	NA	NA	NA	AT5G12330.4	Lateral root primordium (LRP) protein-related 	LOC_Os01g72490.2	"LRP1, putative, expressed"	Medtr8g042820.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200130.1.S1_at	A	A1TS	POPTR_0001s06490	POPTR_0001s06490 (11)	scaffold_1:5004282-5005934(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g16620.5	expressed protein	Medtr3g006210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200132.1.S1_at	A	A1TS	POPTR_0001s06460	POPTR_0001s06460 (11)	scaffold_1:4978214-4978911(+) (11)//scaffold_1437:5022-5740(-) (9)	POPTR_1437s00210 (6)	NA	NA	AT2G40030.1	nuclear RNA polymerase D1B 	LOC_Os02g05880.1	"RNA polymerase Rpb1, domain 2 family protein, expressed"	Medtr8g042720.1	"Cell surface antigen; DNA-directed RNA polymerase, subunit A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200133.1.S1_at	A	A1TS	POPTR_0001s06450	POPTR_0001s06450 (11)	scaffold_1:4970207-4970841(+) (11)	NA	P17545	DNA-directed RNA polymerase II subunit RPB1-B	AT2G40030.1	nuclear RNA polymerase D1B 	LOC_Os02g05880.1	"RNA polymerase Rpb1, domain 2 family protein, expressed"	Medtr8g042720.1	"Cell surface antigen; DNA-directed RNA polymerase, subunit A "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.200134.1.S1_at	A	A1TS	POPTR_0001s06420	POPTR_0001s06420 (11)	scaffold_1:4919524-4919769(-) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G19420.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os05g31920.2	"FYVE zinc finger domain containing protein, expressed"	Medtr5g096940.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200135.1.S1_at	A	A1TS	POPTR_0001s06410	POPTR_0001s06410 (11)	scaffold_1:4910419-4911081(+) (11)	NA	Q6NLV4	Flowering time control protein FY	AT5G13480.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g72220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g039570.1	"WD repeat-containing protein 33, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200135.1.S1_s_at	A	A2TS	POPTR_0001s06410	POPTR_0001s06410 (11)//POPTR_0003s19750 (11)	scaffold_1:4909754-4911052(+) (11)//scaffold_3:18405622-18406952(-) (11)	NA	Q6NLV4	Flowering time control protein FY	AT5G13480.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g72220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g039570.1	"WD repeat-containing protein 33, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200135.1.S1_x_at	A	A1TS	POPTR_0001s06410	POPTR_0001s06410 (11)	scaffold_1:4908844-4911081(+) (11)	NA	Q6NLV4	Flowering time control protein FY	AT5G13480.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g72220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g039570.1	"WD repeat-containing protein 33, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200138.1.S1_at	A	A1TS	POPTR_0001s06330	POPTR_0001s06330 (11)	scaffold_1:4857838-4858524(-) (11)	NA	NA	NA	AT3G14180.1	sequence-specific DNA binding transcription factors 	LOC_Os04g36790.1	"transcription factor like protein, putative, expressed"	Medtr8g025830.1	"6b-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200139.1.S1_at	A	A1TS	POPTR_0001s06310	POPTR_0001s06310 (9)	scaffold_1:4843442-4851906(-) (11)	NA	Q9C6W4	Beta-galactosidase 15	AT5G20710.1	beta-galactosidase 7 	LOC_Os03g15020.1	"beta-galactosidase precursor, putative, expressed"	Medtr2g049730.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200140.1.S1_at	A	A1TS	POPTR_0001s06280	POPTR_0001s06280 (11)	scaffold_1:4836001-4838127(-) (11)	NA	A8XGH1	"DNA-directed RNA polymerases I, II, and III subunit RPABC1"	AT3G54490.1	"RNA polymerase II fifth largest subunit, E "	LOC_Os12g04510.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed"	Medtr7g107270.1	"RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.200141.1.S1_at	A	A2TS	POPTR_0001s06250	POPTR_1209s00200 (11)//POPTR_0001s06250 (11)	scaffold_1:4820837-4821010(-) (11)//scaffold_1209:161-334(+) (11)	NA	Q9FXW4	Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.200143.1.S1_at	A	A1TS	POPTR_0001s06210	POPTR_0001s06210 (10)	scaffold_1:4794494-4795596(-) (10)	NA	Q9SE45	Annexin D3	AT2G38760.1	annexin 3 	LOC_Os05g31760.1	"annexin, putative, expressed"	Medtr8g039910.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.200144.1.S1_at	A	A1TS	POPTR_0001s06200	POPTR_0001s06200 (11)	scaffold_1:4790408-4790990(-) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr3g020860.1	"Glutamine synthetase, beta-Grasp "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200145.1.S1_at	A	A1TS	POPTR_0001s06200	POPTR_0001s06200 (11)	scaffold_1:4788312-4788887(-) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr3g020860.1	"Glutamine synthetase, beta-Grasp "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200146.1.S1_at	A	A1MS	POPTR_0001s06180	POPTR_0001s06180 (9)	scaffold_1:4781696-4782396(+) (9)	NA	O60306	Intron-binding protein aquarius	AT2G38770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g26960.1	"intron-binding protein aquarius, putative, expressed"	Medtr1g046610.1	"Intron-binding protein aquarius, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200148.1.S1_at	A	A1TS	POPTR_0001s06070	POPTR_0001s06070 (9)	scaffold_1:4731270-4731993(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os01g58640.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr4g045140.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.200149.1.S1_at	A	A1TS	POPTR_0001s06050	POPTR_0001s06050 (11)	scaffold_1:4721776-4722077(-) (11)	NA	NA	NA	AT4G30880.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g58660.1	"LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g103720.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20015.1.A1_s_at	A	A1TS	POPTR_0006s10370	POPTR_0006s10370 (11)	scaffold_6:7770619-7770861(-) (11)	NA	Q9M6N7	Ammonium transporter 2	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr7g075790.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.200150.1.S1_at	A	A1TS	POPTR_0001s06020	POPTR_0001s06020 (11)	scaffold_1:4708233-4708509(-) (11)	NA	P90648	Myosin heavy chain kinase B	AT3G51930.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g71780.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g071030.1	Myristoyl-CoA:protein N-myristoyltransferase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200150.1.S1_s_at	A	A2TS	POPTR_0001s06020	POPTR_0001s06020 (11)//POPTR_0003s20150 (11)	scaffold_1:4708270-4708773(-) (11)//scaffold_3:18727058-18727561(+) (11)	NA	P90648	Myosin heavy chain kinase B	AT3G51930.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g71780.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g071030.1	Myristoyl-CoA:protein N-myristoyltransferase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200151.1.S1_at	A	A2TS	POPTR_0001s06010	POPTR_0001s06010 (11)//POPTR_0979s00200 (9)	scaffold_1:4703128-4703751(+) (11)//scaffold_979:4567-5190(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.200152.1.S1_at	A	A1TS	POPTR_0001s05970	POPTR_0001s05970 (11)	scaffold_1:4686079-4686535(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200153.1.S1_at	A	A1TS	POPTR_0001s05960	POPTR_0001s05960 (11)	scaffold_1:4679386-4679848(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200154.1.S1_s_at	A	A1TS	POPTR_0001s05950	POPTR_0001s05950 (11)	scaffold_1:4640405-4640908(+) (11)//scaffold_1:4667782-4668285(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200157.1.S1_at	A	A1MS	POPTR_0017s05060	POPTR_0017s05060 (11)	scaffold_17:3911293-3911683(+) (11)	POPTR_0017s09490 (7)//POPTR_0017s05120 (6)	Q9M1B0	Protein NLP9	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0003677|DNA binding	NA
PtpAffx.200158.1.S1_at	A	A1TS	POPTR_0017s05060	POPTR_0017s05060 (11)	scaffold_17:3913780-3914245(+) (11)	NA	Q9M1B0	Protein NLP9	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0003677|DNA binding	NA
PtpAffx.200159.1.S1_at	A	A1TS	POPTR_0017s05070	POPTR_0017s05070 (11)	scaffold_17:3915922-3916522(+) (11)	NA	Q9M1B0	Protein NLP9	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.200161.1.S1_x_at	A	A1TS	POPTR_0017s05120	POPTR_0017s05120 (11)	scaffold_17:3941346-3941523(-) (11)	POPTR_0017s05060 (8)//POPTR_0017s05040 (6)	Q0JC27	Protein NLP2	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200163.1.S1_at	A	A2TS	POPTR_0017s09470	POPTR_0017s09470 (11)//POPTR_0017s05010 (10)	scaffold_17:3864317-3864892(-) (10)//scaffold_17:8092635-8093223(-) (11)	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr5g101930.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200165.1.S1_at	A	A1TS	POPTR_0001s05730	POPTR_0001s05730 (11)	scaffold_1:4410219-4411305(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200166.1.S1_at	A	A1TS	POPTR_0001s05710	POPTR_0001s05710 (10)	scaffold_1:4393645-4394383(+) (10)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT3G63530.2	RING/U-box superfamily protein 	LOC_Os03g07790.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g087360.1	"Zinc finger, RING-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200167.1.S1_at	A	A1TS	POPTR_0001s05700	POPTR_0001s05700 (11)	scaffold_1:4385730-4386311(+) (11)	NA	Q9SJZ3	"Pentatricopeptide repeat-containing protein At2g22410, mitochondrial"	AT2G22410.1	SLOW GROWTH 1 	LOC_Os10g26070.1	"pentatricopeptide, putative, expressed"	Medtr4g025960.1	N-6 Adenine-specific DNA methylase; Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200168.1.S1_at	A	A1TS	POPTR_0001s05670	POPTR_0001s05670 (11)	scaffold_1:4377353-4377711(+) (11)	NA	NA	NA	AT1G21200.1	sequence-specific DNA binding transcription factors 	LOC_Os12g06640.2	"homeodomain, putative, expressed"	Medtr2g117610.1	"Homeodomain-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200169.1.S1_at	A	A1TS	POPTR_0001s05650	POPTR_0001s05650 (11)	scaffold_1:4370930-4371023(+) (11)	NA	Q9SH30	Putative copper-transporting ATPase 3	AT1G63440.1	heavy metal atpase 5 	LOC_Os02g10290.1	"copper-transporting ATPase, putative, expressed"	Medtr8g012740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.200170.1.S1_at	A	A1TS	POPTR_0001s05620	POPTR_0001s05620 (11)	scaffold_1:4343318-4343623(+) (11)	NA	Q940Q3	Zinc transporter ZTP29	AT3G20870.1	ZIP metal ion transporter family 	LOC_Os02g10230.1	"metal cation transporter, putative, expressed"	Medtr4g087400.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.200170.1.S1_x_at	A	A1TS	POPTR_0001s05620	POPTR_0001s05620 (11)	scaffold_1:4342515-4343652(+) (11)	NA	Q940Q3	Zinc transporter ZTP29	AT3G20870.1	ZIP metal ion transporter family 	LOC_Os02g10230.1	"metal cation transporter, putative, expressed"	Medtr4g087400.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.200171.1.S1_s_at	A	A1TS	POPTR_0001s05580	POPTR_0001s05580 (11)	scaffold_1:4313865-4314435(+) (11)	NA	Q5YGP8	AP2-like ethylene-responsive transcription factor PLT1	AT3G20840.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g42570.1	"AP2/EREBP transcription factor BABY BOOM, putative, expressed"	Medtr4g087240.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200172.1.S1_at	A	A1TS	POPTR_0001s05560	POPTR_0001s05560 (11)	scaffold_1:4263758-4264182(-) (11)	NA	NA	NA	AT5G12950.1	Putative glycosyl hydrolase of unknown function (DUF1680) 	LOC_Os02g10190.1	"DUF1680 domain containing protein, putative, expressed"	Medtr4g086870.1	Protein of unknown function DUF1680 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200173.1.S1_at	A	A1TS	POPTR_0001s05530	POPTR_0001s05530 (11)	scaffold_1:4247375-4247457(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os11g33394.2	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200173.1.S1_s_at	A	A1TS	POPTR_0001s05530	POPTR_0001s05530 (11)	scaffold_1:4246957-4247222(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os11g33394.2	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200174.1.S1_at	A	A1TS	POPTR_0001s05510	POPTR_0001s05510 (10)	scaffold_1:4232793-4235067(+) (10)	NA	Q6NQJ7	Protein FAR1-RELATED SEQUENCE 4	AT1G76320.2	FAR1-related sequence 4 	NA	NA	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200175.1.S1_at	A	A1TS	POPTR_0001s05500	POPTR_0001s05500 (11)	scaffold_1:4220550-4220610(-) (11)	NA	Q9C690	Transcription factor bHLH122	AT1G51140.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr2g117830.2	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200176.1.S1_at	A	A1TS	POPTR_0001s05460	POPTR_0001s05460 (11)	scaffold_1:4189564-4192199(-) (11)	NA	NA	NA	AT5G12920.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g37856.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200177.1.S1_at	A	A1TS	POPTR_0001s05440	POPTR_0001s05440 (11)	scaffold_1:4176972-4177566(-) (11)	NA	NA	NA	AT5G12900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g39740.1	expressed protein	Medtr2g117950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200178.1.S1_at	A	A1TA	POPTR_0001s05410	POPTR_0001s05410 (11)	scaffold_1:4166558-4166899(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200179.1.S1_at	A	A1TS	POPTR_0001s05390	POPTR_0001s05390 (11)	scaffold_1:4158102-4160005(+) (11)	NA	Q9CXT6	Lysine-specific demethylase 8	AT3G20810.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os09g31380.1	"jmjC domain-containing protein 5, putative"	Medtr1g083710.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200180.1.S1_at	A	A1TS	POPTR_0001s05380	POPTR_0001s05380 (11)	scaffold_1:4152459-4152982(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200181.1.S1_at	A	A1TS	POPTR_0001s05370	POPTR_0001s05370 (9)	scaffold_1:4150512-4151209(+) (9)	NA	O23116	ETHYLENE INSENSITIVE 3-like 3 protein	AT1G73730.1	ETHYLENE-INSENSITIVE3-like 3 	LOC_Os09g31400.1	"ethylene-insensitive 3, putative, expressed"	Medtr2g118010.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.200182.1.S1_at	A	A1TS	POPTR_0001s05370	POPTR_0001s05370 (10)	scaffold_1:4145322-4150050(+) (11)	NA	O23116	ETHYLENE INSENSITIVE 3-like 3 protein	AT1G73730.1	ETHYLENE-INSENSITIVE3-like 3 	LOC_Os09g31400.1	"ethylene-insensitive 3, putative, expressed"	Medtr2g118010.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.200183.1.S1_at	A	A1TS	POPTR_0001s05350	POPTR_0001s05350 (11)	scaffold_1:4141017-4141452(+) (11)	NA	NA	NA	AT5G04690.1	Ankyrin repeat family protein 	NA	NA	Medtr5g028300.1	"ankyrin repeat family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200184.1.S1_at	A	A1TS	POPTR_0001s05340	POPTR_0001s05340 (11)	scaffold_1:4126581-4127089(-) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT3G57880.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr7g111440.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200185.1.S1_at	A	A1TS	POPTR_0001s05280	POPTR_0001s05280 (11)	scaffold_1:4053311-4053465(+) (11)	NA	Q5Z9Z0	Beta-glucosidase 24	AT5G44640.1	beta glucosidase 13 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr8g146400.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200185.1.S1_s_at	A	A1TS	POPTR_0001s05280	POPTR_0001s05280 (11)	scaffold_1:4053075-4053986(+) (11)	NA	Q5Z9Z0	Beta-glucosidase 24	AT5G44640.1	beta glucosidase 13 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr8g146400.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200186.1.S1_at	A	A1TS	POPTR_0001s14880	POPTR_0001s14880 (11)	scaffold_1:11696854-11697330(+) (11)//scaffold_1:11733470-11733819(+) (9)	NA	Q04264	Sister chromatid cohesion protein PDS5	AT4G31880.2	LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). 	LOC_Os02g39920.1	"AT hook motif family protein, expressed"	Medtr1g017070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200187.1.S1_at	A	A1TS	POPTR_0001s14850	POPTR_0001s14850 (11)	scaffold_1:11665846-11668247(-) (11)	NA	Q9SAI4	Aquaporin NIP6-1	AT1G80760.1	NOD26-like intrinsic protein 6;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.200188.1.S1_at	A	A1TA	POPTR_0001s14840	POPTR_0001s14840 (11)	scaffold_1:11663330-11663681(-) (11)	NA	NA	NA	AT1G15900.1	unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200189.1.S1_at	A	A1TS	POPTR_0001s14810	POPTR_0001s14810 (11)	scaffold_1:11652619-11654271(+) (11)	NA	Q9SGQ6	Pentatricopeptide repeat-containing protein At1g76280	AT1G76280.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g29790.1	"PPR repeat domain containing protein, putative, expressed"	Medtr6g083470.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200190.1.S1_at	A	A1TS	POPTR_0001s14760	POPTR_0001s14760 (11)	scaffold_1:11625441-11627273(+) (11)	NA	NA	NA	AT1G80980.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80700.1); Has 477 Blast hits to 341 proteins in 85 species: Archae - 2; Bacteria - 44; Metazoa - 78; Fungi - 37; Plants - 42; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink). 	LOC_Os08g17610.1	expressed protein	Medtr8g070810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200191.1.S1_at	A	A1TS	POPTR_0001s14730	POPTR_0001s14730 (11)	scaffold_1:11596565-11597070(-) (11)	NA	Q38942	Rae1-like protein At1g80670	AT1G80670.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g07960.2	"mitotic checkpoint protein, putative, expressed"	Medtr2g008550.1	"Peptidase, cysteine peptidase active site; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200192.1.S1_at	A	A1TS	POPTR_0001s14700	POPTR_0001s14700 (11)	scaffold_1:11576476-11577317(-) (11)	NA	Q42556	"ATPase 9, plasma membrane-type"	AT1G80660.1	H(+)-ATPase 9 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.200193.1.S1_at	A	A1TS	POPTR_0001s14690	POPTR_0001s14690 (11)	scaffold_1:11569891-11570465(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200194.1.S1_s_at	A	A1TS	POPTR_0001s14680	POPTR_0001s14680 (11)	scaffold_1:11565463-11567112(+) (11)	NA	Q0V7T5	Probable receptor-like protein kinase At1g80640	AT4G32000.2	Protein kinase superfamily protein 	LOC_Os02g08530.1	"protein kinase family protein, putative, expressed"	Medtr3g137950.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200195.1.S1_at	A	A1TS	POPTR_0001s14620	POPTR_0001s14620 (11)	scaffold_1:11472244-11472846(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os02g11760.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.200196.1.S1_at	A	A1TS	POPTR_0001s14590	POPTR_0001s14590 (9)	scaffold_1:11431607-11434737(+) (10)	NA	Q8LBL5	E3 ubiquitin-protein ligase PRT1	AT3G24800.1	proteolysis 1 	LOC_Os02g40810.1	"Zinc finger, ZZ type domain containing protein, expressed"	Medtr7g064500.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200199.1.S1_at	A	A1TS	POPTR_0001s14520	POPTR_0001s14520 (11)	scaffold_1:11394377-11395850(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2002.1.S1_at	A	A1TS	POPTR_0008s12530	POPTR_0008s12530 (10)	scaffold_8:8110464-8110967(-) (10)	NA	Q5U4I3	Cyclin-D1-binding protein 1 homolog	AT1G71150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22970.1); Has 105 Blast hits to 103 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 42; Fungi - 6; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os05g48070.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200200.1.S1_x_at	A	A1TS	POPTR_0001s14500	POPTR_0001s14500 (10)	scaffold_1:11374582-11375969(-) (10)	NA	NA	NA	AT3G24160.1	putative type 1 membrane protein 	LOC_Os08g45220.1	expressed protein	Medtr2g130050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200201.1.S1_at	A	A1TS	POPTR_0001s14460	POPTR_0001s14460 (11)	scaffold_1:11335415-11335818(-) (11)	NA	O49323	Cellulose synthase-like protein D1	AT2G33100.1	cellulose synthase-like D1 	LOC_Os06g22980.1	"CSLD5 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.200202.1.S1_at	A	A1TS	POPTR_0001s14450	POPTR_0001s14450 (10)	scaffold_1:11328980-11330700(+) (11)	NA	Q6NU40	Chromosome transmission fidelity protein 18 homolog	AT1G04730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g15810.1	"AAA-type ATPase family protein, putative, expressed"	AC233100_4.1	"T1G11.3, putative AC233100.6 19559-16258 E EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.200203.1.S1_at	A	A1TS	POPTR_0001s14450	POPTR_0001s14450 (11)	scaffold_1:11322954-11326484(+) (11)	NA	Q6NU40	Chromosome transmission fidelity protein 18 homolog	AT1G04730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g15810.1	"AAA-type ATPase family protein, putative, expressed"	AC233100_4.1	"T1G11.3, putative AC233100.6 19559-16258 E EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.200204.1.S1_at	A	A1TS	POPTR_0001s14300	POPTR_0001s14300 (9)	scaffold_1:11249186-11249754(+) (9)	NA	Q7UJ69	Dihydroxy-acid dehydratase	AT3G23940.1	dehydratase family 	LOC_Os08g44530.1	"dihydroxy-acid dehydratase, putative, expressed"	Medtr2g103180.1	Dihydroxy-acid and 6-phosphogluconate dehydratase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.200205.1.S1_at	A	A1TS	POPTR_0001s14270	POPTR_0001s14270 (11)	scaffold_1:11219890-11221165(+) (11)	NA	Q55GU0	Probable serine/threonine-protein kinase DDB_G0267514	AT1G04700.1	PB1 domain-containing protein tyrosine kinase 	LOC_Os12g40279.1	"protein kinase domain containing protein, expressed"	Medtr1g111680.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200207.1.S1_at	A	A1TS	POPTR_0001s14220	POPTR_0001s14220 (11)	scaffold_1:11161639-11161752(-) (11)	NA	Q9LHP4	Receptor-like protein kinase 2	AT3G24240.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g04330.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr5g048490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.200207.1.S1_s_at	A	A2TS	POPTR_0001s14220	POPTR_0003s17430 (11)//POPTR_0001s14220 (11)	scaffold_1:11161825-11162275(-) (11)//scaffold_3:16765164-16765615(-) (11)	NA	Q9LHP4	Receptor-like protein kinase 2	AT3G24240.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g04330.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr5g048490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.200208.1.S1_at	A	A1TS	POPTR_0001s14210	POPTR_0001s14210 (11)	scaffold_1:11157965-11158766(+) (11)	NA	NA	NA	AT1G04670.1	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 2; Bacteria - 5; Metazoa - 1; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200210.1.S1_at	A	A1TS	POPTR_0001s14190	POPTR_0001s14190 (11)	scaffold_1:11148760-11148951(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200210.1.S1_x_at	A	A1TS	POPTR_0001s14190	POPTR_0001s14190 (11)	scaffold_1:11148760-11149354(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200212.1.S1_at	A	A1TS	POPTR_0001s14180	POPTR_0001s14180 (11)	scaffold_1:11133348-11133866(-) (11)	NA	NA	NA	AT1G04650.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g05040.1	expressed protein	Medtr1g111710.1	"Contains similarity to Chlamydia outer membrane protein, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200213.1.S1_at	A	A1TS	POPTR_0001s14170	POPTR_0001s14170 (11)	scaffold_1:11125878-11126216(-) (11)	NA	NA	NA	AT3G24060.1	Plant self-incompatibility protein S1 family 	NA	NA	Medtr2g129570.1	Plant self-incompatibility S1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200214.1.S1_at	A	A1TS	POPTR_0001s14160	POPTR_0001s14160 (11)	scaffold_1:11112616-11112933(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200215.1.S1_at	A	A1TS	POPTR_0001s14150	POPTR_0001s14150 (11)	scaffold_1:11108230-11108634(-) (11)	NA	NA	NA	AT3G24060.1	Plant self-incompatibility protein S1 family 	NA	NA	Medtr2g129570.1	Plant self-incompatibility S1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200217.1.S1_at	A	A1TS	POPTR_0001s14100	POPTR_0001s14100 (11)	scaffold_1:11074025-11074492(+) (11)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT3G24040.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	AC229695_3.1	"Glycosyl transferase, family 14 AC229695.5 13205-18395 E EGN_Mt090430 200"	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.200218.1.S1_at	A	A1TS	POPTR_0001s14080	POPTR_0001s14080 (11)	scaffold_1:11065867-11066427(+) (11)	NA	NA	NA	AT3G24020.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g05030.1	"dirigent, putative, expressed"	Medtr7g021120.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200219.1.S1_at	A	A1TS	POPTR_0001s14070	POPTR_0001s14070 (11)	scaffold_1:11063428-11063916(+) (11)	NA	NA	NA	AT4G13580.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g05030.1	"dirigent, putative, expressed"	Medtr7g021120.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200220.1.S1_at	A	A1TS	POPTR_0001s14060	POPTR_0001s14060 (11)	scaffold_1:11057860-11059103(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200221.1.S1_at	A	A1TS	POPTR_0001s14050	POPTR_0001s14050 (11)	scaffold_1:11054473-11054691(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200222.1.S1_at	A	A1TS	POPTR_0001s13960	POPTR_0001s13960 (10)	scaffold_1:11000146-11001034(+) (10)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200222.1.S1_x_at	A	A1TS	POPTR_0001s13960	POPTR_0001s13960 (10)	scaffold_1:11000139-11001232(+) (10)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200223.1.S1_at	A	A1MS	POPTR_0001s13950	POPTR_0001s13950 (9)	scaffold_1:10988718-10989778(-) (10)	NA	Q5M7C8	HORMA domain-containing protein 1	AT1G67370.1	DNA-binding HORMA family protein 	LOC_Os09g32930.3	"retrotransposon protein, putative, SINE subclass, expressed"	Medtr3g103770.1	DNA-binding HORMA 	GO:0007067|mitosis	NA	NA
PtpAffx.200224.1.S1_at	A	A1TS	POPTR_0001s13920	POPTR_0001s13920 (11)	scaffold_1:10980406-10981765(+) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT5G26594.1	response regulator 24 	NA	NA	Medtr7g117970.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.200225.1.S1_at	A	A1TS	POPTR_0001s13910	POPTR_0001s13910 (11)	scaffold_1:10974930-10975819(+) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT5G26594.1	response regulator 24 	NA	NA	Medtr7g117970.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.200226.1.S1_at	A	A1TS	POPTR_0001s13900	POPTR_0001s13900 (11)	scaffold_1:10960278-10961406(-) (11)	NA	Q9LQ12	4-coumarate--CoA ligase-like 1	AT1G62940.1	acyl-CoA synthetase 5 	LOC_Os04g24530.1	"AMP-binding domain containing protein, expressed"	AC233655_1.1	AMP-dependent synthetase and ligase AC233655.2 29515-24780 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.200227.1.S1_s_at	A	A2TS	POPTR_0001s13890	POPTR_0001s13890 (11)//POPTR_0003s17120 (11)	scaffold_1:10950784-10950862(-) (11)//scaffold_3:16575494-16575572(-) (11)	NA	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.200227.1.S1_x_at	A	A1TS	POPTR_0001s13890	POPTR_0001s13890 (11)	scaffold_1:10950436-10950863(-) (11)	POPTR_0003s17120 (7)	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.200229.1.S1_x_at	A	A1TS	POPTR_0001s13830	POPTR_0001s13830 (10)	scaffold_1:10904140-10907604(+) (10)	NA	NA	NA	AT1G27385.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 77 Blast hits to 77 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g30410.2	expressed protein	Medtr3g103900.1	Protein of unknown function DUF493 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200231.1.S1_at	A	A1TS	POPTR_0001s13760	POPTR_0001s13760 (11)	scaffold_1:10837248-10837717(+) (11)	NA	Q9QYI4	DnaJ homolog subfamily B member 12	AT5G53150.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os03g28310.1	"dnaJ domain containing protein, expressed"	Medtr6g070440.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.200232.1.S1_at	A	A1MS	POPTR_0001s13740	POPTR_0001s13740 (11)	scaffold_1:10804662-10805174(-) (11)	NA	Q9C5U1	Histidine kinase 3	AT1G27320.1	histidine kinase 3 	LOC_Os01g69920.1	"histidine kinase, putative, expressed"	Medtr3g104030.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.200233.1.S1_at	A	A1MS	POPTR_0001s13730	POPTR_0001s13730 (11)	scaffold_1:10796852-10796970(-) (11)	NA	Q9C7F5	Nuclear transport factor 2	AT1G27970.1	nuclear transport factor 2B 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
PtpAffx.200234.1.S1_at	A	A1TS	POPTR_0001s13710	POPTR_0001s13710 (11)	scaffold_1:10794994-10795652(+) (11)	NA	NA	NA	AT1G27300.1	unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os02g30610.2	expressed protein	Medtr3g104080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200235.1.S1_at	A	A1TS	POPTR_0001s13690	POPTR_0001s13690 (11)	scaffold_1:10777916-10777959(-) (11)	NA	NA	NA	AT5G08391.1	Protein of unknown function (DUF 3339) 	LOC_Os11g30360.1	expressed protein	Medtr4g147160.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200235.1.S1_x_at	A	A1TS	POPTR_0001s13690	POPTR_0001s13690 (11)	scaffold_1:10777827-10778007(-) (11)	NA	NA	NA	AT5G08391.1	Protein of unknown function (DUF 3339) 	LOC_Os11g30360.1	expressed protein	Medtr4g147160.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200236.1.S1_at	A	A1TS	POPTR_0001s13630	POPTR_0001s13630 (11)	scaffold_1:10695667-10696754(+) (11)	NA	Q6YZE8	Squamosa promoter-binding-like protein 16	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.200237.1.S1_at	A	A1TS	POPTR_0001s13590	POPTR_0001s13590 (11)	scaffold_1:10656867-10657433(+) (11)	NA	Q9FF46	ABC transporter G family member 28	AT5G60740.1	ABC transporter family protein 	LOC_Os11g22350.1	"white-brown complex homolog protein, putative, expressed"	Medtr1g120480.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.200238.1.S1_at	A	A1MS	POPTR_0001s13580	POPTR_0001s13580 (9)	scaffold_1:10643764-10644746(-) (9)	NA	Q9C509	Sphingosine-1-phosphate lyase	AT1G27980.1	dihydrosphingosine phosphate lyase 	LOC_Os01g01080.1	"decarboxylase, putative, expressed"	Medtr7g022250.1	Pyridoxal-dependent decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200239.1.S1_at	A	A1TS	POPTR_0001s13520	POPTR_0001s13520 (11)	scaffold_1:10601089-10601645(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g27440.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200241.1.S1_at	A	A1MS	POPTR_0001s13470	POPTR_0001s13470 (9)	scaffold_1:10550361-10551396(+) (10)	NA	A5UMN6	5-methylthioadenosine/S-adenosylhomocysteine deaminase	NA	NA	LOC_Os12g28270.2	"amidohydrolase, putative, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.200242.1.S1_at	A	A1MS	POPTR_0001s13470	POPTR_0001s13470 (11)	scaffold_1:10547419-10547556(+) (11)	NA	A5UMN6	5-methylthioadenosine/S-adenosylhomocysteine deaminase	NA	NA	LOC_Os12g28270.2	"amidohydrolase, putative, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.200242.1.S1_s_at	A	A1TS	POPTR_0001s13470	POPTR_0001s13470 (11)	scaffold_1:10546848-10547414(+) (11)	NA	A5UMN6	5-methylthioadenosine/S-adenosylhomocysteine deaminase	NA	NA	LOC_Os12g28270.2	"amidohydrolase, putative, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.200243.1.S1_at	A	A1TS	POPTR_0001s13440	POPTR_0001s13440 (11)	scaffold_1:10531119-10531257(+) (11)	NA	Q6K609	Glutaredoxin-C3	AT5G14070.1	Thioredoxin superfamily protein 	LOC_Os02g30850.1	"OsGrx_C8 - glutaredoxin subgroup III, expressed"	Medtr7g027340.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.200243.1.S1_s_at	A	A2TS	POPTR_0001s13440	POPTR_0001s13440 (11)//POPTR_0003s16540 (11)	scaffold_1:10531138-10531405(+) (11)//scaffold_3:16130984-16131251(+) (11)	NA	Q6K609	Glutaredoxin-C3	AT5G14070.1	Thioredoxin superfamily protein 	LOC_Os02g30850.1	"OsGrx_C8 - glutaredoxin subgroup III, expressed"	Medtr7g027340.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.200244.1.S1_at	A	A1TS	POPTR_0001s13430	POPTR_0001s13430 (11)	scaffold_1:10520680-10521263(+) (11)	NA	O54922	Exocyst complex component 7	AT5G13150.1	exocyst subunit exo70 family protein C1 	LOC_Os11g06700.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr7g027250.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.200245.1.S1_at	A	A1TS	POPTR_0001s13410	POPTR_0001s13410 (11)	scaffold_1:10501808-10502500(+) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT5G13170.1	senescence-associated gene 29 	LOC_Os11g31190.1	"nodulin MtN3 family protein, putative, expressed"	Medtr7g005250.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200247.1.S1_at	A	A1TS	POPTR_0001s13340	POPTR_0001s13340 (11)	scaffold_1:10429023-10429440(-) (11)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os04g32370.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g005100.1	"Uncharacterized protein At2g33490, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200249.1.S1_at	A	A1TS	POPTR_0001s13310	POPTR_0001s13310 (11)	scaffold_1:10402535-10404147(+) (11)	NA	Q9C7E8	Zinc finger protein CONSTANS-LIKE 15	AT1G28050.1	B-box type zinc finger protein with CCT domain 	LOC_Os09g33550.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g096570.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.200249.1.S1_s_at	A	A1TS	POPTR_0001s13310	POPTR_0001s13310 (11)	scaffold_1:10403327-10404338(+) (11)	NA	Q9C7E8	Zinc finger protein CONSTANS-LIKE 15	AT1G28050.1	B-box type zinc finger protein with CCT domain 	LOC_Os09g33550.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g096570.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.20025.1.S1_at	A	A1TS	POPTR_0003s07000	POPTR_0003s07000 (11)	scaffold_3:8610055-8610763(-) (11)	NA	NA	NA	AT3G14280.1	unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g09350.1	expressed protein	Medtr8g026570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200250.1.S1_at	A	A1TS	POPTR_0001s13270	POPTR_0001s13270 (10)	scaffold_1:10362074-10362416(-) (10)	NA	NA	NA	AT3G24780.1	"Uncharacterised conserved protein UCP015417,  vWA "	LOC_Os09g32360.1	"gp176, putative, expressed"	Medtr5g047770.1	Protein of unknown function T31B5_30_vWA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200252.1.S1_at	A	A1TS	POPTR_0001s13220	POPTR_0001s13220 (10)	scaffold_1:10298569-10299464(-) (11)	NA	NA	NA	AT5G13250.1	RING finger protein 	LOC_Os04g32510.1	expressed protein	Medtr7g021080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200253.1.S1_at	A	A1TS	POPTR_0001s13210	POPTR_0001s13210 (11)	scaffold_1:10291824-10292196(-) (11)	NA	NA	NA	AT5G13250.1	RING finger protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200253.1.S1_x_at	A	A1TS	POPTR_0001s13210	POPTR_0001s13210 (11)	scaffold_1:10291784-10292196(-) (11)	NA	NA	NA	AT5G13250.1	RING finger protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200254.1.S1_at	A	A1TS	POPTR_0001s13200	POPTR_0001s13200 (11)	scaffold_1:10287045-10287560(+) (11)	NA	NA	NA	AT3G48800.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os03g63320.1	"SAM domain containing protein, putative, expressed"	Medtr4g152000.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200256.1.S1_at	A	A1TS	POPTR_0001s13140	POPTR_0001s13140 (11)	scaffold_1:10225161-10225344(-) (11)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr7g020920.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.200256.1.S1_x_at	A	A1TS	POPTR_0001s13140	POPTR_0001s13140 (11)	scaffold_1:10224362-10225344(-) (11)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr7g020920.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.200257.1.S1_at	A	A1TS	POPTR_0001s13120	POPTR_0001s13120 (11)	scaffold_1:10206827-10207339(+) (11)	NA	Q9LYU9	"Pentatricopeptide repeat-containing protein At5g13270, chloroplastic"	AT5G13270.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g30760.1	"pentatricopeptide, putative"	Medtr8g077070.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200258.1.S1_at	A	A1TS	POPTR_0001s13110	POPTR_0001s13110 (11)	scaffold_1:10195920-10196802(+) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os11g32110.4	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.200259.1.S1_at	A	A1TS	POPTR_0001s13090	POPTR_0001s13090 (11)	scaffold_1:10177983-10178336(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.200260.1.S1_at	A	A1TS	POPTR_0001s13080	POPTR_0001s13080 (11)	scaffold_1:10170723-10171711(+) (11)	NA	Q9LYU7	Inactive leucine-rich repeat receptor-like protein kinase CORYNE	AT5G13290.2	Protein kinase superfamily protein 	LOC_Os01g70260.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr7g020720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200261.1.S1_at	A	A1TS	POPTR_0001s13040	POPTR_0001s13040 (11)	scaffold_1:10130239-10130646(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200262.1.S1_at	A	A1TS	POPTR_0001s13030	POPTR_0001s13030 (11)	scaffold_1:10116332-10116653(-) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr7g020760.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.200263.1.S1_at	A	A1TS	POPTR_0001s13030	POPTR_0001s13030 (11)	scaffold_1:10112762-10113393(-) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr7g020760.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.200263.1.S1_x_at	A	A1TS	POPTR_0001s13030	POPTR_0001s13030 (11)	scaffold_1:10112689-10113393(-) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr7g020760.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.200265.1.S1_at	A	A1TS	POPTR_0001s12990	POPTR_0001s12990 (11)	scaffold_1:10082717-10084838(-) (11)	NA	Q9LYU3	Ethylene-responsive transcription factor ERF113	AT5G13330.1	related to AP2 6l 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr7g020790.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200266.1.S1_at	A	A1TS	POPTR_0001s12890	POPTR_0001s12890 (11)	scaffold_1:10002408-10002969(-) (11)	NA	Q9LYR6	Probable peptide/nitrate transporter At5g13400	AT5G13400.1	Major facilitator superfamily protein 	LOC_Os01g01360.1	"peptide transporter PTR2, putative, expressed"	Medtr7g006070.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.200267.1.S1_at	A	A1TS	POPTR_0001s12870	POPTR_0001s12870 (11)	scaffold_1:9992860-9992984(+) (11)	NA	Q67YC9	Uncharacterized protein At4g14100	AT4G14100.1	"transferases, transferring glycosyl groups "	LOC_Os03g63380.1	expressed protein	Medtr3g151440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200267.1.S1_s_at	A	A1TS	POPTR_0001s12870	POPTR_0001s12870 (11)	scaffold_1:9992980-9993473(+) (11)	NA	Q67YC9	Uncharacterized protein At4g14100	AT4G14100.1	"transferases, transferring glycosyl groups "	LOC_Os03g63380.1	expressed protein	Medtr3g151440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200268.1.S1_at	A	A1TS	POPTR_0001s12860	POPTR_0001s12860 (11)	scaffold_1:9991373-9991661(+) (11)	NA	NA	NA	AT5G13390.1	no exine formation 1 	LOC_Os11g32470.1	"NEF1, putative, expressed"	Medtr7g006260.1	"NEF1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200269.1.S1_at	A	A1TS	POPTR_0001s12830	POPTR_0001s12830 (11)	scaffold_1:9952154-9954540(-) (11)	NA	Q93ZY7	"Nudix hydrolase 12, mitochondrial"	AT1G12880.1	nudix hydrolase homolog 12 	LOC_Os11g32750.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g043270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.200270.1.S1_at	A	A1TS	POPTR_0001s12820	POPTR_0001s12820 (11)	scaffold_1:9938455-9939032(-) (11)	NA	Q9M644	Ethylene-responsive transcription factor LEP	AT5G13910.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32790.1	"AP2 domain containing protein, expressed"	Medtr8g139310.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200271.1.S1_at	A	A1TS	POPTR_0327s00200	POPTR_0327s00200 (11)	scaffold_327:2415-2520(+) (11)	NA	Q5JK32	Potassium transporter 5	AT4G13420.1	high affinity K+ transporter 5 	LOC_Os01g70490.1	"potassium transporter, putative, expressed"	Medtr8g025740.1	K+ potassium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200271.1.S1_s_at	A	A1TS	POPTR_0327s00200	POPTR_0327s00200 (11)	scaffold_327:2017-2426(+) (11)	NA	Q5JK32	Potassium transporter 5	AT4G13420.1	high affinity K+ transporter 5 	LOC_Os01g70490.1	"potassium transporter, putative, expressed"	Medtr8g025740.1	K+ potassium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200272.1.S1_at	A	A2TS	POPTR_0001s12780	POPTR_0001s12780 (10)//POPTR_0327s00210 (9)	scaffold_1:9892848-9893413(-) (11)//scaffold_327:6981-7546(+) (9)	NA	Q9M7K4	Potassium transporter 5	AT4G13420.1	high affinity K+ transporter 5 	LOC_Os01g70490.1	"potassium transporter, putative, expressed"	Medtr4g136710.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.200273.1.S1_at	A	A1TS	POPTR_0001s12750	POPTR_0001s12750 (11)	scaffold_1:9876541-9878199(+) (11)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os08g42620.2	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.200274.1.S1_at	A	A1TS	POPTR_0001s12700	POPTR_0001s12700 (11)	scaffold_1:9842308-9842876(-) (11)	NA	P55861	DNA replication licensing factor mcm2	AT1G44900.1	minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os11g29380.1	"MCM2 - Putative minichromosome maintenance MCM complex subunit 2, expressed"	Medtr8g137330.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0016887|ATPase activity	NA
PtpAffx.200275.1.S1_at	A	A1TS	POPTR_0001s12690	POPTR_0001s12690 (11)	scaffold_1:9837756-9838471(-) (11)	NA	Q39817	Calnexin homolog	AT5G61790.1	calnexin 1 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr4g145110.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
PtpAffx.200276.1.S1_s_at	A	A1TS	POPTR_0001s12650	POPTR_0001s12650 (11)	scaffold_1:9804184-9804723(+) (11)	NA	Q9FIJ0	Respiratory burst oxidase homolog protein D	AT5G47910.1	respiratory burst oxidase homologue D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.200277.1.S1_at	A	A1TS	POPTR_0001s12610	POPTR_0001s12610 (11)	scaffold_1:9772193-9773414(+) (11)	NA	Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G47900.1	Protein of unknown function (DUF1624) 	LOC_Os02g32504.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr1g107540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200278.1.S1_at	A	A1TS	POPTR_0001s12560	POPTR_0001s12560 (11)	scaffold_1:9738241-9738584(-) (11)	NA	Q5AYT7	Hsp70 nucleotide exchange factor fes1	AT3G51980.1	ARM repeat superfamily protein 	LOC_Os09g33780.1	expressed protein	Medtr3g110290.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200279.1.S1_at	A	A1TS	POPTR_0001s12540	POPTR_0001s12540 (11)	scaffold_1:9726091-9726346(+) (11)	NA	NA	NA	AT5G47860.1	Protein of unknown function (DUF1350) 	LOC_Os04g33280.2	expressed protein	Medtr8g083960.1	Protein of unknown function DUF1350 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200279.1.S1_s_at	A	A2TS	POPTR_0001s12540	POPTR_0003s15700 (11)//POPTR_0001s12540 (11)	scaffold_1:9725543-9726221(+) (11)//scaffold_3:15444068-15444720(+) (11)	NA	NA	NA	AT5G47860.1	Protein of unknown function (DUF1350) 	LOC_Os04g33280.2	expressed protein	Medtr8g083960.1	Protein of unknown function DUF1350 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200280.1.S1_at	A	A1TS	POPTR_0001s12530	POPTR_0001s12530 (11)	scaffold_1:9717553-9718562(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr7g102590.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.200281.1.S1_at	A	A1TS	POPTR_0001s12510	POPTR_0001s12510 (11)	scaffold_1:9707579-9707922(-) (11)	NA	B0CAZ0	Chaperone protein dnaJ	AT5G59610.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g60790.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g117200.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.200282.1.S1_at	A	A1TS	POPTR_0001s12490	POPTR_0001s12490 (11)	scaffold_1:9699610-9700761(-) (11)	NA	Q8DHG3	Tryptophanyl-tRNA synthetase	AT2G25840.1	Nucleotidylyl transferase superfamily protein 	LOC_Os01g54020.1	"tRNA synthetase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200283.1.S1_at	A	A1TS	POPTR_0001s12460	POPTR_0001s12460 (11)	scaffold_1:9666997-9667911(+) (11)	NA	NA	NA	AT4G20310.1	Peptidase M50 family protein 	LOC_Os01g46590.1	expressed protein	Medtr8g084110.1	Peptidase M50 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200286.1.S1_at	A	A1TS	POPTR_0001s12440	POPTR_0001s12440 (9)	scaffold_1:9650026-9650626(+) (10)	NA	NA	NA	AT4G20300.2	Protein of unknown function (DUF1639) 	LOC_Os01g48830.2	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200287.1.S1_at	A	A1TS	POPTR_0001s12430	POPTR_0001s12430 (11)	scaffold_1:9642671-9645765(+) (11)	NA	Q54XM9	Transcription initiation factor TFIID subunit 11	AT4G20280.1	TBP-associated factor 11 	LOC_Os01g48810.1	"transcription initiation factor TFIID subunit 11, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005634|nucleus
PtpAffx.200288.1.S1_at	A	A1TS	POPTR_0001s12400	POPTR_0001s12400 (11)	scaffold_1:9616556-9618592(+) (11)	NA	Q9FT54	Transcription factor GTE6	AT2G34900.1	Transcription factor GTE6 	LOC_Os06g04640.1	"bromodomain domain containing protein, expressed"	Medtr8g084150.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200289.1.S1_at	A	A1TS	POPTR_0001s12380	POPTR_0001s12380 (11)	scaffold_1:9593353-9594491(+) (11)	NA	Q14566	DNA replication licensing factor MCM6	AT5G44635.1	minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os05g14590.1	"MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed"	Medtr4g096540.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.200290.1.S1_at	A	A1TS	POPTR_0001s12370	POPTR_0001s12370 (11)	scaffold_1:9584628-9585002(-) (11)	NA	Q9SY29	Probable purine permease 4	AT1G30840.2	purine permease 4 	LOC_Os01g48800.1	"purine permease, putative, expressed"	Medtr3g150070.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.200291.1.S1_at	A	A1TS	POPTR_0001s12350	POPTR_0001s12350 (11)	scaffold_1:9568215-9570205(+) (11)	NA	Q7Y1X1	Esterase	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g037600.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.200292.1.S1_at	A	A1TS	POPTR_0001s12340	POPTR_0001s12340 (11)	scaffold_1:9560627-9560892(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200293.1.S1_at	A	A1MS	POPTR_0001s12275	POPTR_0001s12275 (11)	scaffold_1:9504289-9504960(-) (11)	NA	Q9SY33	Peroxidase 7	AT1G30870.1	Peroxidase superfamily protein 	LOC_Os07g31610.1	"peroxidase precursor, putative, expressed"	Medtr8g148530.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.200294.1.S1_at	A	A1TS	POPTR_0001s12270	POPTR_0001s12270 (11)	scaffold_1:9501582-9502889(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200295.1.S1_at	A	A1TS	POPTR_0001s12260	POPTR_0001s12260 (10)	scaffold_1:9491913-9494013(+) (10)	NA	Q8WV16	DDB1- and CUL4-associated factor 4	AT5G17370.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g01730.1	"WD-40 repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200296.1.S1_at	A	A1TS	POPTR_0001s12240	POPTR_0001s12240 (11)	scaffold_1:9484250-9484766(+) (11)	NA	Q8LPH6	Transcription factor MYB86	AT3G12720.1	myb domain protein 67 	LOC_Os07g31470.1	"MYB family transcription factor, putative, expressed"	Medtr2g085800.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200297.1.S1_at	A	A1TS	POPTR_0001s12200	POPTR_0001s12200 (11)	scaffold_1:9447973-9448535(+) (11)	NA	Q7Y211	"Pentatricopeptide repeat-containing protein At3g57430, chloroplastic"	AT3G57430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g02850.1	"pentatricopeptide, putative, expressed"	Medtr4g089900.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200298.1.S1_at	A	A1TS	POPTR_0001s12180	POPTR_0001s12180 (11)	scaffold_1:9435497-9435812(+) (11)	POPTR_0003s15340 (8)	Q797A7	Uncharacterized amino acid permease YfnA	AT2G34960.1	cationic amino acid transporter 5 	LOC_Os01g11160.1	"amino acid permease family protein, putative, expressed"	Medtr4g137890.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200299.1.S1_at	A	A1TS	POPTR_0001s12170	POPTR_0001s12170 (11)	scaffold_1:9430632-9432606(+) (11)	NA	Q32L81	"MMP37-like protein, mitochondrial"	AT3G47630.2	CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os11g34840.1	"MMP37-like protein, mitochondrial precursor, putative"	AC235671_16.2	Mitochondrial matrix Mmp37 AC235671.2 66695-71943 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200300.1.S1_at	A	A1TS	POPTR_0001s12090	POPTR_0001s12090 (11)	scaffold_1:9375304-9376026(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200301.1.S1_at	A	A1TS	POPTR_0001s12100	POPTR_0001s12100 (11)	scaffold_1:9361081-9362691(+) (9)//scaffold_1:9381825-9383426(+) (11)	POPTR_0001s12070 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200302.1.S1_at	A	A1TS	POPTR_1856s00200	POPTR_1856s00200 (11)	scaffold_1856:3261-3305(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200302.1.S1_s_at	A	A2TS	POPTR_0001s12030	POPTR_0001s12030 (11)//POPTR_1856s00200 (11)	scaffold_1:9339188-9339645(+) (11)//scaffold_1856:3311-3768(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200303.1.S1_at	A	A2TS	POPTR_0001s12040	POPTR_0001s12040 (11)//POPTR_0001s12050 (11)	scaffold_1:9342197-9343553(-) (11)//scaffold_1:9352795-9354164(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200305.1.S1_at	A	A1TS	POPTR_0001s12010	POPTR_0001s12010 (11)	scaffold_1:9311474-9313342(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200307.1.S1_at	A	A1MA	POPTR_0001s11970	POPTR_0001s11970 (11)	scaffold_1:9303223-9303815(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200308.1.S1_at	A	A2TS	POPTR_0001s11960	POPTR_0001s15030 (11)//POPTR_0001s11960 (11)	scaffold_1:9298183-9299216(+) (11)//scaffold_1:11864773-11865776(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.200309.1.S1_at	A	A1TS	POPTR_0001s11930	POPTR_0001s11930 (11)	scaffold_1:9260410-9261364(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200310.1.S1_at	A	A1TS	POPTR_0001s11920	POPTR_0001s11920 (11)	scaffold_1:9256071-9256830(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200311.1.S1_at	A	A1TS	POPTR_0001s11900	POPTR_0001s11900 (11)	scaffold_1:9219239-9221090(-) (11)	NA	Q9Z0W3	Nuclear pore complex protein Nup160	AT1G33410.2	SUPPRESSOR OF AUXIN RESISTANCE1 	LOC_Os02g04970.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200312.1.S1_at	A	A1MS	POPTR_0001s11820	POPTR_0001s11820 (9)	scaffold_1:9160343-9161262(-) (9)	NA	Q08448	Putative lipase YOR059C	AT5G51180.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g04810.1	"serine esterase family protein, putative, expressed"	Medtr1g059520.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200313.1.S1_at	A	A1TS	POPTR_0001s11780	POPTR_0001s11780 (11)	scaffold_1:9141621-9141684(+) (11)	NA	Q8VY90	Ethylene-responsive transcription factor ERF105	AT5G51190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200314.1.S1_at	A	A1MS	POPTR_0001s11750	POPTR_0001s11750 (10)	scaffold_1:9116547-9116892(+) (11)	NA	O65036	Zinc finger CCCH domain-containing protein 54	AT5G07500.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os05g10670.1	"zinc finger CCCH type family protein, putative, expressed"	Medtr5g090250.1	"Zinc finger, CCCH-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200315.1.S1_at	A	A1TS	POPTR_0001s11730	POPTR_0001s11730 (11)	scaffold_1:9092078-9093279(-) (11)	NA	Q869R9	Myb-like protein J	AT5G61620.1	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200316.1.S1_at	A	A1TS	POPTR_0001s11700	POPTR_0001s11700 (10)	scaffold_1:9078598-9079158(+) (10)	NA	NA	NA	AT5G61630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr1g111910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200317.1.S1_at	A	A1TS	POPTR_0001s11690	POPTR_0001s11690 (11)	scaffold_1:9077431-9077866(+) (11)	NA	Q39224	Protein SRG1	AT5G07480.1	KAR-UP oxidoreductase 1 	LOC_Os04g57160.2	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr7g093160.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.200318.1.S1_at	A	A1TS	POPTR_0001s11670	POPTR_0001s11670 (10)	scaffold_1:9071766-9072376(-) (10)	NA	NA	NA	NA	NA	LOC_Os09g29700.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200319.1.S1_at	A	A1TS	POPTR_0001s11630	POPTR_0001s11630 (11)	scaffold_1:9043330-9043802(-) (11)	NA	Q9LNQ4	Putative phospholipid-transporting ATPase 4	AT1G17500.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g36990.1	"phospholipid-transporting ATPase 4, putative, expressed"	Medtr2g120840.1	"ATPase, E1-E2 type "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.200320.1.S1_at	A	A1TS	POPTR_0001s11610	POPTR_0001s11610 (9)	scaffold_1:9016773-9017221(-) (9)	NA	Q9SHE9	LOB domain-containing protein 4	AT1G31320.1	LOB domain-containing protein 4 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr4g114920.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200321.1.S1_at	A	A1TS	POPTR_0001s11580	POPTR_0001s11580 (11)	scaffold_1:9003331-9003831(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200322.1.S1_at	A	A1TS	POPTR_0001s11570	POPTR_0001s11570 (10)	scaffold_1:8995519-8996080(+) (11)	NA	A4IG72	Transforming growth factor-beta receptor-associated protein 1 homolog	AT1G22860.1	Vacuolar sorting protein 39 	LOC_Os05g01360.1	expressed protein	Medtr8g093370.1	"EMB2754 ; binding, putative "	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	NA
PtpAffx.200323.1.S1_at	A	A1TS	POPTR_0001s11540	POPTR_0001s11540 (11)	scaffold_1:8964619-8965267(-) (11)	NA	NA	NA	AT5G48655.3	RING/U-box superfamily protein 	LOC_Os01g69040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200324.1.S1_at	A	A1TS	POPTR_0001s11530	POPTR_0001s11530 (11)	scaffold_1:8961876-8962821(-) (11)	NA	Q652J4	Probable potassium transporter 13	AT2G30070.1	potassium transporter 1 	LOC_Os06g45940.2	"potassium transporter, putative, expressed"	Medtr5g080150.1	K+ potassium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200325.1.S1_at	A	A1TS	POPTR_0001s11520	POPTR_0001s11520 (11)	scaffold_1:8960173-8961366(+) (11)	NA	NA	NA	AT1G31335.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g105990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200326.1.S1_x_at	A	A1TS	POPTR_0001s11500	POPTR_0001s11500 (11)	scaffold_1:8947670-8948255(-) (11)	NA	NA	NA	AT4G24110.1	unknown protein; Has 76 Blast hits to 76 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g02300.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200327.1.S1_at	A	A1TS	POPTR_0001s11490	POPTR_0001s11490 (11)	scaffold_1:8939707-8940135(-) (11)	NA	NA	NA	AT1G64690.1	branchless trichome 	LOC_Os04g53350.1	expressed protein	Medtr3g068450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200328.1.S1_s_at	A	A1TS	POPTR_0001s11480	POPTR_0001s11480 (11)	scaffold_1:8931220-8931738(-) (11)	NA	NA	NA	AT4G24150.1	growth-regulating factor 8 	LOC_Os02g47280.2	"growth-regulating factor, putative, expressed"	Medtr3g123080.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.200329.1.S1_at	A	A1TS	POPTR_0001s11460	POPTR_0001s11460 (11)	scaffold_1:8912171-8912971(-) (11)	NA	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	AT1G56140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os08g10310.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.200330.1.S1_at	A	A1TS	POPTR_0001s11440	POPTR_0001s11440 (11)	scaffold_1:8902444-8902730(+) (11)	NA	Q8BUV8	Protein GPR107	AT5G42090.1	Lung seven transmembrane receptor family protein 	LOC_Os06g04130.2	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr3g109390.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.200330.1.S1_x_at	A	A1TS	POPTR_0001s11440	POPTR_0001s11440 (11)	scaffold_1:8902411-8902729(+) (11)	NA	Q8BUV8	Protein GPR107	AT5G42090.1	Lung seven transmembrane receptor family protein 	LOC_Os06g04130.2	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr3g109390.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.200331.1.S1_at	A	A1TS	POPTR_0001s11400	POPTR_0001s11400 (11)	scaffold_1:8868634-8869114(+) (11)	NA	O49687	Transcription factor MYC4	AT4G17880.1	Basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.200333.1.S1_at	A	A1TS	POPTR_0001s11380	POPTR_0001s11380 (11)	scaffold_1:8827917-8828597(-) (11)	NA	P46897	Homeobox-leucine zipper protein ATHB-7	AT2G46680.1	homeobox 7 	LOC_Os09g35910.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g029340.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.200334.1.S1_at	A	A1TS	POPTR_0001s11360	POPTR_0001s11360 (11)	scaffold_1:8807491-8807803(-) (11)	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.200334.1.S1_s_at	A	A1TS	POPTR_0001s11360	POPTR_0001s11360 (11)	scaffold_1:8807521-8808042(-) (11)	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.200335.1.S1_at	A	A1TS	POPTR_0001s11340	POPTR_0001s11340 (11)	scaffold_1:8775686-8776565(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200337.1.S1_at	A	A1TS	POPTR_0001s11300	POPTR_0001s11300 (11)	scaffold_1:8741296-8741613(-) (11)	NA	NA	NA	AT4G24090.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 144 Blast hits to 142 proteins in 73 species: Archae - 3; Bacteria - 62; Metazoa - 7; Fungi - 13; Plants - 44; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os09g35990.1	expressed protein	Medtr3g012750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200338.1.S1_at	A	A1TS	POPTR_0001s11290	POPTR_0001s11290 (11)	scaffold_1:8738788-8740042(+) (11)	NA	NA	NA	AT5G41960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g49610.1	expressed protein	Medtr5g008290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200339.1.S1_s_at	A	A1TS	POPTR_0001s11280	POPTR_0001s11280 (11)	scaffold_1:8735584-8737072(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT4G10730.1	Protein kinase superfamily protein 	LOC_Os03g02320.1	"STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g006330.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.20034.1.S1_s_at	A	A1TS	POPTR_0001s25810	POPTR_0001s25810 (11)	scaffold_1:24868750-24869795(+) (11)	NA	Q6NQ88	Protein DAMAGED DNA-BINDING 2	AT5G58760.1	damaged DNA binding 2 	LOC_Os01g04870.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g078770.1	WD40-like 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200340.1.S1_at	A	A1TS	POPTR_0001s11270	POPTR_0001s11270 (11)	scaffold_1:8724478-8725399(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200341.1.S1_at	A	A1MS	POPTR_0001s11260	POPTR_0001s11260 (10)	scaffold_1:8722146-8722568(-) (10)	NA	B1LLJ9	2-keto-3-deoxy-L-rhamnonate aldolase	AT4G10750.1	Phosphoenolpyruvate carboxylase family protein 	LOC_Os09g36030.1	"4-hydroxy-2-oxovalerate aldolase, putative, expressed"	NA	NA	GO:0006725|cellular aromatic compound metabolic process	GO:0016830|carbon-carbon lyase activity	NA
PtpAffx.200342.1.S1_at	A	A1TS	POPTR_0001s11240	POPTR_0001s11240 (11)	scaffold_1:8713295-8713875(-) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT1G64640.1	early nodulin-like protein 8 	LOC_Os03g02400.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g116560.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.200343.1.S1_s_at	A	A1TS	POPTR_0001s11230	POPTR_0001s11230 (11)	scaffold_1:8711110-8712024(+) (11)	NA	O82486	N6-adenosine-methyltransferase MT-A70-like	AT4G10760.1	mRNAadenosine methylase 	LOC_Os02g45110.1	"MT-A70 domain containing protein, expressed"	Medtr4g158130.1	MT-A70 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008168|methyltransferase activity	NA
PtpAffx.200345.1.S1_s_at	A	A1TS	POPTR_0001s11220	POPTR_0001s11220 (11)	scaffold_1:8701471-8702606(-) (11)	NA	Q9T096	Protein yippee-like At4g27745	AT4G27745.1	Yippee family putative zinc-binding protein 	LOC_Os12g29960.1	"yippee zinc-binding protein, putative"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200346.1.S1_at	A	A1TS	POPTR_0001s11210	POPTR_0001s11210 (11)	scaffold_1:8698132-8698414(+) (11)	NA	Q944Q0	Serine/threonine-protein kinase WNK8	AT5G41990.1	with no lysine (K) kinase 8 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr3g109240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200347.1.S1_at	A	A1TS	POPTR_0001s11170	POPTR_0001s11170 (11)	scaffold_1:8673566-8674335(+) (11)	NA	Q7XJU0	Uncharacterized basic helix-loop-helix protein At1g64625	AT2G27230.2	transcription factor-related 	LOC_Os02g45170.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200348.1.S1_at	A	A1TS	POPTR_0001s11080	POPTR_0001s11080 (11)	scaffold_1:8592460-8597074(+) (11)	NA	Q2TBP8	"Protein RSM22 homolog, mitochondrial"	AT1G64600.1	methyltransferases;copper ion binding 	LOC_Os07g20150.1	expressed protein	Medtr8g044050.1	"Ribosomal small subunit Rsm22, related "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0008168|methyltransferase activity	NA
PtpAffx.200349.1.S1_at	A	A1TS	POPTR_0001s11070	POPTR_0001s11070 (11)	scaffold_1:8584283-8585353(+) (11)	NA	Q9ERI6	Retinol dehydrogenase 14	AT4G24050.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g03830.1	"retinol dehydrogenase, putative, expressed"	Medtr3g114440.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.200350.1.S1_at	A	A1TS	POPTR_0001s11020	POPTR_0001s11020 (11)	scaffold_1:8542311-8543051(-) (11)	NA	Q54ML1	Glutamine-dependent NAD(+) synthetase	AT1G55090.1	carbon-nitrogen hydrolase family protein 	LOC_Os07g07260.1	"glutamine-dependent NAD, putative, expressed"	NA	NA	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.200352.1.S1_at	A	A1TS	POPTR_0001s10920	POPTR_0001s10920 (11)	scaffold_1:8476442-8476966(-) (11)	NA	Q84TF5	RING-H2 zinc finger protein RHA4a	AT4G24015.1	RING/U-box superfamily protein 	LOC_Os02g35144.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g031670.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200353.1.S1_at	A	A1TS	POPTR_0001s10910	POPTR_0001s10910 (11)	scaffold_1:8475255-8476017(+) (11)	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.2	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200355.1.S1_at	A	A1MS	POPTR_0001s10870	POPTR_0001s10870 (9)	scaffold_1:8429546-8430111(+) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT1G64500.1	Glutaredoxin family protein 	LOC_Os01g13480.1	"glutaredoxin, putative, expressed"	Medtr7g127470.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.200356.1.S1_at	A	A1TS	POPTR_0001s10850	POPTR_0001s10850 (11)	scaffold_1:8425462-8425714(+) (11)	NA	Q9LXA8	Probable beta-D-xylosidase 6	AT5G10560.1	Glycosyl hydrolase family protein 	LOC_Os04g44840.1	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr5g032330.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200357.1.S1_at	A	A1TS	POPTR_0001s10840	POPTR_0001s10840 (11)	scaffold_1:8417350-8418351(-) (11)	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200358.1.S1_at	A	A1TS	POPTR_0001s10820	POPTR_0001s10820 (11)	scaffold_1:8411048-8411239(+) (11)	NA	O65155	RNA polymerase II transcriptional coactivator KELP	AT4G10920.2	transcriptional coactivator p15 (PC4) family protein (KELP) 	LOC_Os01g50960.1	"RNA polymerase II transcriptional coactivator KELP, putative, expressed"	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003713|transcription coactivator activity	NA
PtpAffx.200359.1.S1_at	A	A1TS	POPTR_0001s10790	POPTR_0001s10790 (10)	scaffold_1:8397820-8398742(+) (10)	NA	O59729	Uncharacterized protein slp1	AT4G23950.2	Galactose-binding protein 	LOC_Os01g65520.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr4g032100.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200360.1.S1_at	A	A1TS	POPTR_0001s10780	POPTR_0001s10780 (11)	scaffold_1:8392471-8393771(+) (11)	NA	P51327	ATP-dependent zinc metalloprotease FtsH	AT4G23940.1	FtsH extracellular protease family 	LOC_Os06g45820.1	"OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.200361.1.S1_at	A	A1TS	POPTR_0001s10770	POPTR_0001s10770 (11)	scaffold_1:8385129-8385789(+) (11)	NA	Q8L7I1	Uncharacterized protein At4g10930	AT4G10930.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g10700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200362.1.S1_at	A	A1TS	POPTR_0001s10770	POPTR_0001s10770 (10)	scaffold_1:8378290-8380676(+) (11)	NA	Q8L7I1	Uncharacterized protein At4g10930	AT4G10930.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g10700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200363.1.S1_at	A	A1TS	POPTR_0001s10750	POPTR_0001s10750 (11)	scaffold_1:8364886-8367338(-) (11)	NA	Q3HRP0	Calcineurin B-like protein 7	AT1G64480.1	calcineurin B-like protein 8 	LOC_Os02g18880.1	"calcineurin B, putative, expressed"	Medtr3g124000.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200364.1.S1_at	A	A1TS	POPTR_0001s10740	POPTR_0001s10740 (11)	scaffold_1:8353005-8353200(-) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT2G46500.2	phosphoinositide 4-kinase gamma 4 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr5g009140.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.200365.1.S1_at	A	A1TS	POPTR_0001s10700	POPTR_0001s10700 (10)	scaffold_1:8321878-8322020(+) (10)	NA	O65781	UDP-glucose 4-epimerase GEPI48	AT4G10960.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 5 	LOC_Os05g51670.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.200366.1.S1_at	A	A1TS	POPTR_0001s10690	POPTR_0001s10690 (11)	scaffold_1:8312709-8312841(+) (11)	NA	NA	NA	AT1G64430.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os08g24390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200366.1.S1_s_at	A	A1TS	POPTR_0001s10690	POPTR_0001s10690 (11)	scaffold_1:8313265-8314091(+) (11)	NA	NA	NA	AT1G64430.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os08g24390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200367.1.S1_at	A	A1TS	POPTR_0001s10640	POPTR_0001s10640 (11)	scaffold_1:8275601-8275971(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g009330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200367.1.S1_x_at	A	A1TS	POPTR_0001s10640	POPTR_0001s10640 (11)	scaffold_1:8275557-8275965(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g009330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200368.1.S1_at	A	A1TS	POPTR_0001s10620	POPTR_0001s10620 (11)	scaffold_1:8267451-8267784(+) (11)	NA	Q8BU04	Putative E3 ubiquitin-protein ligase UBR7	AT4G23860.3	PHD finger protein-related 	LOC_Os06g33810.1	"zinc finger protein, putative, expressed"	Medtr5g009280.1	"Zinc finger, PHD-type; Zinc finger, N-recognin "	NA	GO:0004842|ubiquitin-protein ligase activity||GO:0008270|zinc ion binding	NA
PtpAffx.200369.1.S1_at	A	A1TS	POPTR_0001s10610	POPTR_0001s10610 (11)	scaffold_1:8256811-8259025(-) (11)	NA	P0CH01	Putative RING-H2 finger protein ATL21A	AT5G53110.1	RING/U-box superfamily protein 	LOC_Os12g04130.1	OsFBO23 - F-box and other domain containing protein	Medtr3g124280.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200370.1.S1_at	A	A1TS	POPTR_0001s10600	POPTR_0001s10600 (11)	scaffold_1:8249821-8251357(-) (11)	NA	Q42191	Mitochondrial inner membrane protein OXA1	AT5G62050.1	homolog of yeast oxidase assembly 1 (OXA1) 	LOC_Os03g02480.1	"inner membrane protein, putative, expressed"	AC233677_14.1	60 kDa inner membrane insertion protein AC233677.2 80748-73714 E EGN_Mt090430 200	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.200371.1.S1_at	A	A1TS	POPTR_0001s10580	POPTR_0001s10580 (11)	scaffold_1:8233453-8233502(+) (11)	NA	NA	NA	AT4G23840.1	Leucine-rich repeat (LRR) family protein 	LOC_Os05g12140.1	"Leucine Rich Repeat family protein, expressed"	Medtr3g058830.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.200372.1.S1_at	A	A1TS	POPTR_0001s10580	POPTR_0001s10580 (11)	scaffold_1:8230420-8231240(+) (11)	NA	NA	NA	AT4G23840.1	Leucine-rich repeat (LRR) family protein 	LOC_Os05g12140.1	"Leucine Rich Repeat family protein, expressed"	Medtr3g058830.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.200373.1.S1_at	A	A1TS	POPTR_0001s10570	POPTR_0001s10570 (11)	scaffold_1:8218688-8219267(-) (11)	NA	Q5SN75	Probable protein phosphatase 2C 8	AT1G07430.1	highly ABA-induced PP2C gene 2 	LOC_Os01g46760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g009410.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200375.1.S1_at	A	A1TS	POPTR_0001s10490	POPTR_0001s10490 (11)	scaffold_1:8133736-8134186(-) (11)	NA	Q8H0Y8	Probable WRKY transcription factor 41	AT4G11070.1	WRKY family transcription factor 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.200377.1.S1_at	A	A1TS	POPTR_0001s10470	POPTR_0001s10470 (11)	scaffold_1:8126244-8126843(+) (11)	NA	Q01H90	Lysine-specific histone demethylase 1 homolog 3	AT3G10390.1	Flavin containing amine oxidoreductase family protein 	LOC_Os04g47270.1	"amine oxidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200378.1.S1_at	A	A1TS	POPTR_0001s10460	POPTR_0001s10460 (11)	scaffold_1:8121794-8122714(+) (11)	NA	P51105	Dihydroflavonol-4-reductase	AT5G42800.1	dihydroflavonol 4-reductase 	LOC_Os07g40986.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr2g014920.1	"Leucoanthocyanidin reductase, related "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.200378.1.S1_x_at	A	A1TS	POPTR_0001s10460	POPTR_0001s10460 (11)	scaffold_1:8121794-8122714(+) (11)	NA	P51105	Dihydroflavonol-4-reductase	AT5G42800.1	dihydroflavonol 4-reductase 	LOC_Os07g40986.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr2g014920.1	"Leucoanthocyanidin reductase, related "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.200379.1.S1_at	A	A1TS	POPTR_0001s10450	POPTR_0001s10450 (11)	scaffold_1:8119050-8119309(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200380.1.S1_at	A	A1TS	POPTR_0001s10440	POPTR_0001s10440 (11)	scaffold_1:8109995-8110368(+) (11)	NA	NA	NA	AT5G41810.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 514 Blast hits to 437 proteins in 98 species: Archae - 0; Bacteria - 21; Metazoa - 115; Fungi - 53; Plants - 52; Viruses - 5; Other Eukaryotes - 268 (source: NCBI BLink). 	NA	NA	Medtr5g009490.1	"Avr9/Cf-9 rapidly elicited protein 194, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200381.1.S1_s_at	A	A1TS	POPTR_0001s10390	POPTR_0001s10390 (11)	scaffold_1:8070798-8070986(+) (11)	NA	NA	NA	AT3G61670.1	Protein of unknown function (DUF3133) 	LOC_Os02g15820.1	"extra-large G-protein-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200382.1.S1_at	A	A1TS	POPTR_0001s10380	POPTR_0001s10380 (11)	scaffold_1:8061172-8061497(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200383.1.S1_at	A	A1TS	POPTR_0001s10350	POPTR_0001s10350 (11)	scaffold_1:8041327-8042314(+) (11)	NA	NA	NA	AT5G41780.1	myosin heavy chain-related 	NA	NA	Medtr5g009510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200384.1.S1_at	A	A1TS	POPTR_0001s10330	POPTR_0001s10330 (10)	scaffold_1:8015288-8016014(-) (10)	NA	Q9T014	Protein SPA1-RELATED 2	AT4G11110.1	SPA1-related 2 	LOC_Os05g49590.2	"suppressor of phythchrome A, putative, expressed"	Medtr5g009560.1	Protein kinase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200385.1.S1_at	A	A1TS	POPTR_0001s10300	POPTR_0001s10300 (10)	scaffold_1:7991209-7991584(+) (10)	NA	Q9SUQ2	Ethylene-responsive transcription factor CRF2	AT4G23750.2	cytokinin response factor 2 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr3g124710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200387.1.S1_at	A	A1TS	POPTR_0001s10230	POPTR_0001s10230 (11)	scaffold_1:7920663-7921029(-) (11)	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200389.1.S1_at	A	A1TS	POPTR_0001s10210	POPTR_0001s10210 (11)	scaffold_1:7910762-7911361(-) (11)	NA	Q6TKS7	Interferon-induced GTP-binding protein Mx	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.200390.1.S1_at	A	A1TS	POPTR_0001s10200	POPTR_0001s10200 (11)	scaffold_1:7909927-7910244(+) (11)	NA	NA	NA	AT4G23720.1	Protein of unknown function (DUF1191) 	LOC_Os12g02550.1	expressed protein	Medtr5g083560.1	Protein of unknown function DUF1191 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200391.1.S1_at	A	A1TS	POPTR_0001s10180	POPTR_0001s10180 (11)	scaffold_1:7875208-7875762(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT5G41620.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g15980.1	expressed protein	Medtr5g009870.1	"Uncharacterized protein At5g41620, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200392.1.S1_at	A	A1TS	POPTR_0001s10170	POPTR_0001s10170 (11)	scaffold_1:7853443-7854020(-) (11)	NA	Q9FFR9	Cation/H(+) antiporter 18	AT5G41610.1	cation/H+ exchanger 18 	LOC_Os05g19500.1	"ATCHX, putative, expressed"	Medtr5g009880.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.200393.1.S1_at	A	A1MS	POPTR_0001s10165	POPTR_0001s10165 (11)	scaffold_1:7852405-7852783(-) (11)	NA	P13240	Disease resistance response protein 206	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44250.1	"dirigent, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200394.1.S1_at	A	A1TS	POPTR_0001s10110	POPTR_0001s10110 (11)	scaffold_1:7827251-7828340(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200395.1.S1_at	A	A1TS	POPTR_0001s10100	POPTR_0001s10100 (11)	scaffold_1:7825345-7826226(-) (11)	NA	B8AAM2	"UPF0016 protein 1, chloroplastic"	AT1G64150.1	Uncharacterized protein family (UPF0016) 	NA	NA	Medtr5g009920.1	Protein of unknown function UPF0016 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200396.1.S1_at	A	A1TS	POPTR_0001s10050	POPTR_0001s10050 (9)	scaffold_1:7776107-7776777(-) (11)	NA	Q9P7J5	Uncharacterized AAA domain-containing protein C24B10.10c	AT1G64110.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g12660.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g009960.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.200397.1.S1_at	A	A1TS	POPTR_0001s10000	POPTR_0001s10000 (10)	scaffold_1:7732522-7732686(-) (10)	NA	NA	NA	AT1G64080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52870.1); Has 1546 Blast hits to 738 proteins in 176 species: Archae - 0; Bacteria - 143; Metazoa - 278; Fungi - 131; Plants - 95; Viruses - 4; Other Eukaryotes - 895 (source: NCBI BLink). 	LOC_Os01g12640.2	expressed protein	Medtr5g009970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200397.1.S1_s_at	A	A1TS	POPTR_0001s10000	POPTR_0001s10000 (11)	scaffold_1:7732512-7733121(-) (11)	NA	NA	NA	AT1G64080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52870.1); Has 1546 Blast hits to 738 proteins in 176 species: Archae - 0; Bacteria - 143; Metazoa - 278; Fungi - 131; Plants - 95; Viruses - 4; Other Eukaryotes - 895 (source: NCBI BLink). 	LOC_Os01g12640.2	expressed protein	Medtr5g009970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200398.1.S1_at	A	A1TS	POPTR_0001s09990	POPTR_0001s09990 (11)	scaffold_1:7727299-7727835(+) (11)	NA	NA	NA	AT2G46150.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os05g45070.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr8g005060.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.200399.1.S1_at	A	A1MS	POPTR_0001s09970	POPTR_0001s09970 (11)	scaffold_1:7718230-7718490(+) (11)	NA	Q948U0	Respiratory burst oxidase homolog protein A	AT1G64060.1	respiratory burst oxidase protein F 	LOC_Os05g45210.3	"respiratory burst oxidase, putative, expressed"	Medtr1g099800.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.200399.1.S1_s_at	A	A2TS	POPTR_0001s09970	POPTR_0003s13310 (10)//POPTR_0001s09970 (10)	scaffold_1:7718207-7718827(+) (11)//scaffold_3:13707152-13707740(+) (11)	NA	Q948U0	Respiratory burst oxidase homolog protein A	AT1G64060.1	respiratory burst oxidase protein F 	LOC_Os05g45210.3	"respiratory burst oxidase, putative, expressed"	Medtr1g099800.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.200400.1.S1_at	A	A1TS	POPTR_0001s09960	POPTR_0001s09960 (11)	scaffold_1:7685217-7685752(-) (11)	NA	A0MFL4	Protein LURP-one-related 17	AT5G41590.1	Protein of unknown function (DUF567) 	LOC_Os05g40630.1	"DUF567 domain containing protein, putative, expressed"	Medtr4g005550.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200402.1.S1_at	A	A1TS	POPTR_0001s09950	POPTR_0001s09950 (11)	scaffold_1:7679397-7680472(+) (11)	NA	NA	NA	AT1G64050.1	unknown protein; Has 524 Blast hits to 342 proteins in 101 species: Archae - 0; Bacteria - 106; Metazoa - 106; Fungi - 24; Plants - 25; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). 	LOC_Os02g16600.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200403.1.S1_at	A	A1TS	POPTR_0001s09920	POPTR_0001s09920 (11)	scaffold_1:7653936-7656342(-) (11)	NA	NA	NA	AT4G11270.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g22550.1	"transducin family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200404.1.S1_s_at	A	A1TS	POPTR_0001s09910	POPTR_0001s09910 (11)	scaffold_1:7649313-7650027(-) (11)	NA	P22503	Endoglucanase	AT4G09740.1	glycosyl hydrolase 9B14 	LOC_Os08g29770.1	"endoglucanase, putative, expressed"	Medtr5g010040.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200405.1.S1_at	A	A1TS	POPTR_0001s09840	POPTR_0001s09840 (11)	scaffold_1:7591841-7592489(+) (11)	NA	NA	NA	AT1G01490.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g38870.1	"heavy metal-associated domain containing protein, expressed"	Medtr6g061870.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.200406.1.S1_at	A	A1TS	POPTR_0001s09820	POPTR_0001s09820 (11)	scaffold_1:7573934-7574460(+) (11)	NA	NA	NA	AT1G63930.1	from the Czech 'roh' meaning 'corner' 	LOC_Os02g01930.1	expressed protein	Medtr1g125110.1	Protein of unknown function DUF793 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200407.1.S1_s_at	A	A1TS	POPTR_0001s09760	POPTR_0001s09760 (11)	scaffold_1:7502289-7504073(+) (11)	NA	NA	NA	AT1G28140.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2301, transmembrane (InterPro:IPR019275); Has 140 Blast hits to 140 proteins in 72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). "	LOC_Os03g63360.1	"glutathione S-transferase, putative, expressed"	Medtr1g126130.1	"Multicopper oxidase, type 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200408.1.S1_at	A	A1TS	POPTR_0001s09750	POPTR_0001s09750 (11)	scaffold_1:7496636-7497668(+) (11)	NA	NA	NA	AT5G41470.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os03g64380.1	expressed protein	Medtr5g010150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200409.1.S1_at	A	A1TS	POPTR_0001s09740	POPTR_0001s09740 (9)	scaffold_1:7490585-7491147(+) (11)	NA	Q9CA56	"Pentatricopeptide repeat-containing protein At1g74600, chloroplastic"	AT1G74600.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os01g25270.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	Medtr4g134960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200410.1.S1_at	A	A1TS	POPTR_0001s09680	POPTR_0001s09680 (11)	scaffold_1:7402313-7403522(-) (11)	NA	NA	NA	AT5G41380.1	CCT motif family protein 	LOC_Os05g38990.1	"CCT motif family protein, expressed"	Medtr5g010230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200411.1.S1_s_at	A	A1TS	POPTR_0001s09670	POPTR_0001s09670 (11)	scaffold_1:7379589-7381906(+) (11)	NA	Q38861	DNA repair helicase XPB1	AT5G41370.1	homolog of xeroderma pigmentosum complementation group B 1 	LOC_Os01g49680.1	"DNA repair helicase XPB2, putative, expressed"	NA	NA	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.200412.1.S1_at	A	A1TS	POPTR_0001s09660	POPTR_0001s09660 (10)	scaffold_1:7362035-7362096(-) (10)	NA	O81742	Beta-adaptin-like protein C	AT4G23460.1	Adaptin family protein 	LOC_Os03g23950.1	"adapitin protein, putative, expressed"	Medtr4g103980.1	"Adaptin, N-terminal; Alpha/gamma adaptin, C-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.200412.1.S1_x_at	A	A1TS	POPTR_0001s09660	POPTR_0001s09660 (11)	scaffold_1:7361683-7362105(-) (11)	NA	O81742	Beta-adaptin-like protein C	AT4G23460.1	Adaptin family protein 	LOC_Os03g23950.1	"adapitin protein, putative, expressed"	Medtr4g103980.1	"Adaptin, N-terminal; Alpha/gamma adaptin, C-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.200413.1.S1_at	A	A1TS	POPTR_0001s09620	POPTR_0001s09620 (11)	scaffold_1:7325071-7325655(-) (11)	NA	NA	NA	AT4G11400.1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein 	LOC_Os04g08410.1	"ELM2 domain containing protein, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.200414.1.S1_at	A	A1TS	POPTR_0001s09560	POPTR_0001s09560 (11)	scaffold_1:7275053-7275289(-) (11)	NA	Q8W4E1	"DEAD-box ATP-dependent RNA helicase 47, mitochondrial"	AT1G12770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g12000.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.200415.1.S1_at	A	A1TS	POPTR_0001s09550	POPTR_0001s09550 (11)	scaffold_1:7273631-7274444(+) (11)	NA	Q3EA54	UPF0497 membrane protein At4g11655	AT4G11655.1	Uncharacterised protein family (UPF0497) 	LOC_Os02g04180.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.200416.1.S1_at	A	A1TS	POPTR_0001s09540	POPTR_0001s09540 (11)	scaffold_1:7268928-7269651(+) (11)	NA	O65780	UDP-glucose 4-epimerase GEPI42	AT1G12780.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 1 	LOC_Os09g35800.1	"UDP-glucose 4-epimerase, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200417.1.S1_at	A	A1TS	POPTR_0001s09530	POPTR_0001s09530 (11)	scaffold_1:7267866-7268354(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200418.1.S1_at	A	A1TS	POPTR_0001s09520	POPTR_0001s09520 (11)	scaffold_1:7258213-7258707(-) (11)	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G63700.1	Protein kinase superfamily protein 	LOC_Os04g47240.3	"STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g126720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200419.1.S1_at	A	A1TS	POPTR_0001s09510	POPTR_0001s09510 (11)	scaffold_1:7256675-7257972(+) (11)	NA	Q91WL8	WW domain-containing oxidoreductase	AT4G11410.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.200420.1.S1_at	A	A1TS	POPTR_0001s09490	POPTR_0001s09490 (11)	scaffold_1:7244231-7245203(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200421.1.S1_at	A	A1TS	POPTR_0001s09480	POPTR_0001s09480 (11)	scaffold_1:7237748-7239651(+) (11)	NA	Q03523	"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase"	AT1G63680.1	acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases 	LOC_Os10g40130.1	"Mur ligase family protein, putative, expressed"	NA	NA	GO:0009058|biosynthetic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.200422.1.S1_at	A	A1TS	POPTR_0001s09470	POPTR_0001s09470 (9)	scaffold_1:7225238-7225712(-) (11)	NA	NA	NA	AT4G00440.2	Protein of unknown function (DUF3741) 	LOC_Os03g01580.2	expressed protein	Medtr7g087380.1	"{, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200423.1.S1_at	A	A1TS	POPTR_0001s09460	POPTR_0001s09460 (11)	scaffold_1:7218895-7219086(+) (11)	NA	P83970	Plasma membrane ATPase	AT2G24520.1	H(+)-ATPase 5 	LOC_Os05g25550.2	"E1-E2 ATPase domain containing protein, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200423.1.S1_x_at	A	A1TS	POPTR_0001s09460	POPTR_0001s09460 (11)	scaffold_1:7218895-7219086(+) (11)	NA	P83970	Plasma membrane ATPase	AT2G24520.1	H(+)-ATPase 5 	LOC_Os05g25550.2	"E1-E2 ATPase domain containing protein, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200424.1.S1_at	A	A1TS	POPTR_0001s09420	POPTR_0001s09420 (11)	scaffold_1:7182561-7183111(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT4G26400.1	RING/U-box superfamily protein 	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g044580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200425.1.S1_at	A	A1TS	POPTR_0001s09410	POPTR_0001s09410 (11)	scaffold_1:7171464-7171812(-) (11)	NA	O81635	Kinesin-4	AT1G63640.2	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os01g54080.1	"kinesin motor protein-related, putative, expressed"	Medtr4g158250.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.200426.1.S1_at	A	A1TS	POPTR_0001s09400	POPTR_0001s09400 (11)	scaffold_1:7168549-7168798(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200427.1.S1_at	A	A1TS	POPTR_0001s09390	POPTR_0001s09390 (11)	scaffold_1:7163535-7164113(+) (11)	NA	NA	NA	AT4G11450.1	Protein of unknown function (DUF3527) 	LOC_Os10g40324.1	expressed protein	Medtr4g149400.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200428.1.S1_at	A	A1TS	POPTR_0001s09320	POPTR_0001s09320 (11)	scaffold_1:7119888-7120324(+) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT1G63500.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g04050.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200429.1.S1_at	A	A1TS	POPTR_0001s09260	POPTR_0001s09260 (11)	scaffold_1:7086194-7086765(+) (11)	NA	Q8H038	Xyloglucan galactosyltransferase KATAMARI1 homolog	AT1G63450.1	root hair specific 8 	LOC_Os03g05110.1	"xyloglucan galactosyltransferase KATAMARI1, putative, expressed"	Medtr5g010470.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.200430.1.S1_at	A	A1TS	POPTR_0001s09250	POPTR_0001s09250 (11)	scaffold_1:7083232-7083697(+) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200430.1.S1_s_at	A	A2TS	POPTR_0001s09250	POPTR_0001s09250 (11)//POPTR_0003s12600 (11)	scaffold_1:7083332-7083775(+) (11)//scaffold_3:13131675-13132118(+) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200431.1.S1_at	A	A1TS	POPTR_0001s09250	POPTR_0001s09250 (11)	scaffold_1:7080881-7081114(+) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200432.1.S1_at	A	A1TS	POPTR_0001s09170	POPTR_0001s09170 (11)	scaffold_1:7023804-7024335(-) (11)	NA	P30175	Actin-depolymerizing factor	AT4G00680.1	actin depolymerizing factor 8 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr4g149600.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.200433.1.S1_at	A	A1TS	POPTR_0001s09160	POPTR_0001s09160 (11)	scaffold_1:7020781-7021596(+) (11)	NA	Q9SH27	Protein LURP-one-related 4	AT1G63410.1	Protein of unknown function (DUF567) 	LOC_Os07g47540.1	"DUF567 domain containing protein, putative, expressed"	Medtr4g149680.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200434.1.S1_at	A	A1TS	POPTR_0001s09150	POPTR_0001s09150 (11)	scaffold_1:7014467-7015169(+) (11)	NA	Q9SH27	Protein LURP-one-related 4	AT1G63410.1	Protein of unknown function (DUF567) 	LOC_Os07g47540.1	"DUF567 domain containing protein, putative, expressed"	Medtr4g149680.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200435.1.S1_at	A	A1TS	POPTR_0001s09140	POPTR_0001s09140 (9)	scaffold_1:7006304-7006571(-) (11)	NA	NA	NA	AT3G48980.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os02g42920.1	"DTA2, putative, expressed"	Medtr5g010650.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200436.1.S1_at	A	A1TS	POPTR_0001s09110	POPTR_0001s09110 (11)	scaffold_1:6970628-6971190(+) (11)	NA	Q9SV07	Acyl-CoA--sterol O-acyltransferase 1	AT3G51970.1	acyl-CoA sterol acyl transferase 1 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr2g029750.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200437.1.S1_at	A	A1TS	POPTR_0001s09100	POPTR_0001s09100 (11)	scaffold_1:6965124-6965278(-) (11)	NA	Q9ZVL3	Nuclear transcription factor Y subunit C-3	AT1G54830.3	"nuclear factor Y, subunit C3 "	LOC_Os04g58680.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr2g095930.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.200438.1.S1_at	A	A1TS	POPTR_0001s09080	POPTR_0001s09080 (10)	scaffold_1:6948650-6949657(-) (10)	NA	P29675	Pollen-specific protein SF3	AT2G39900.1	GATA type zinc finger transcription factor family protein 	LOC_Os02g42820.1	"OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.2	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.200439.1.S1_at	A	A1TS	POPTR_0001s09060	POPTR_0001s09060 (11)	scaffold_1:6933277-6933370(-) (11)	NA	Q9C8S9	Probable DEAD-box ATP-dependent RNA helicase 48	AT1G63250.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os02g57980.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.200441.1.S1_at	A	A1MS	POPTR_0001s09020	POPTR_0001s09020 (11)	scaffold_1:6893665-6893859(+) (11)	NA	Q10PV9	DEAD-box ATP-dependent RNA helicase 47B	AT1G12770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g12000.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.200442.1.S1_at	A	A1TS	POPTR_0001s09010	POPTR_0001s09010 (11)	scaffold_1:6889244-6889713(-) (11)	NA	NA	NA	AT1G60590.1	Pectin lyase-like superfamily protein 	LOC_Os05g50260.1	"polygalacturonase, putative, expressed"	Medtr5g035390.1	"Glycoside hydrolase, family 28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200443.1.S1_at	A	A1TS	POPTR_0001s08950	POPTR_0001s08950 (11)	scaffold_1:6857340-6858914(+) (11)	NA	NA	NA	AT4G11670.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200444.1.S1_at	A	A1TS	POPTR_0001s08940	POPTR_0001s08940 (11)	scaffold_1:6836301-6836816(+) (11)	NA	O49399	Pentatricopeptide repeat-containing protein At4g18840	AT4G18840.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os10g26070.1	"pentatricopeptide, putative, expressed"	Medtr5g098900.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200445.1.S1_s_at	A	A1TS	POPTR_0001s08940	POPTR_0001s08940 (11)	scaffold_1:6835395-6835722(+) (11)	NA	O49399	Pentatricopeptide repeat-containing protein At4g18840	AT4G18840.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os10g26070.1	"pentatricopeptide, putative, expressed"	Medtr5g098900.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200446.1.S1_at	A	A1TS	POPTR_0001s08930	POPTR_0001s08930 (11)	scaffold_1:6827960-6829960(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G25270.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os04g34530.1	"integral membrane protein DUF6 containing protein, expressed"	Medtr2g008130.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.200447.1.S1_at	A	A1TS	POPTR_0001s08900	POPTR_0001s08900 (11)	scaffold_1:6796984-6797214(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT4G23050.2	PAS domain-containing protein tyrosine kinase family protein 	LOC_Os02g12810.1	"protein kinase domain containing protein, expressed"	Medtr5g010910.1	PAS; Protein kinase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200448.1.S1_at	A	A1TS	POPTR_0001s08890	POPTR_0001s08890 (11)	scaffold_1:6785610-6787482(-) (11)	NA	NA	NA	AT4G11720.1	hapless 2 	LOC_Os05g18730.1	"generative cell specific-1, putative, expressed"	Medtr5g010930.1	"generative cell specific-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200449.1.S1_at	A	A1TS	POPTR_0001s08880	POPTR_0001s08880 (11)	scaffold_1:6783896-6784933(+) (11)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.200450.1.S1_at	A	A1TS	POPTR_0001s08850	POPTR_0001s08850 (11)	scaffold_1:6763506-6763898(+) (11)	NA	Q9CAN3	Scarecrow-like protein 28	AT1G63100.1	GRAS family transcription factor 	LOC_Os06g03710.1	"DELLA protein SLR1, putative, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200452.1.S1_at	A	A1TS	POPTR_0001s08800	POPTR_0001s08800 (11)	scaffold_1:6718707-6719690(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200453.1.S1_at	A	A1TS	POPTR_0001s08760	POPTR_0001s08760 (11)	scaffold_1:6693316-6694094(-) (11)	NA	NA	NA	AT5G52060.1	BCL-2-associated athanogene 1 	LOC_Os09g35630.1	"BAG domain-containing protein, putative, expressed"	Medtr1g129370.1	"Ubiquitin; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.200454.1.S1_at	A	A1TS	POPTR_0001s08740	POPTR_0001s08740 (11)	scaffold_1:6677790-6678230(-) (11)	NA	Q9CAN9	Ethylene-responsive transcription factor ERF026	AT5G52020.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g73770.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr1g129460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200455.1.S1_s_at	A	A2TS	POPTR_0001s08730	POPTR_0011s01952 (11)//POPTR_0001s08730 (11)	scaffold_1:6666208-6666844(+) (11)//scaffold_11:1596778-1597414(-) (11)//scaffold_12:7842879-7843143(+) (9)//scaffold_3:8226696-8227350(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g036540.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200456.1.S1_at	A	A1TS	POPTR_0001s08710	POPTR_0001s08710 (11)	scaffold_1:6659364-6659809(+) (11)	NA	Q9SYS6	Dehydration-responsive element-binding protein 1C	AT4G25470.1	C-repeat/DRE binding factor 2 	LOC_Os01g73770.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr1g129500.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200457.1.S1_at	A	A1TS	POPTR_0001s08700	POPTR_0001s08700 (11)	scaffold_1:6648011-6649122(-) (11)	NA	NA	NA	AT4G23020.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11780.1). 	LOC_Os03g02660.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200458.1.S1_at	A	A1TS	POPTR_0001s08680	POPTR_0001s08680 (11)	scaffold_1:6629685-6634739(-) (11)	NA	NA	NA	AT4G11790.1	Pleckstrin homology (PH) domain superfamily protein 	LOC_Os03g46480.1	"ranBP1 domain containing protein, expressed"	Medtr5g011100.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200459.1.S1_at	A	A1TS	POPTR_0001s08660	POPTR_0001s08660 (9)	scaffold_1:6628116-6628786(+) (11)	NA	NA	NA	AT1G12580.1	phosphoenolpyruvate carboxylase-related kinase 1 	LOC_Os06g03682.2	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g129520.1	"CDPK-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200460.1.S1_at	A	A1TS	POPTR_0001s08640	POPTR_0001s08640 (9)	scaffold_1:6583420-6584097(-) (11)	NA	Q93ZQ5	SPX domain-containing membrane protein At4g22990	AT4G22990.1	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os04g48390.1	"uncharacterized membrane protein, putative, expressed"	Medtr1g126330.1	"SPX, N-terminal; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200461.1.S1_at	A	A1TS	POPTR_0001s08620	POPTR_0001s08620 (11)	scaffold_1:6567085-6568347(-) (11)	NA	Q9S746	Protein HOTHEAD	AT1G12570.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os04g48400.1	"HOTHEAD precursor, putative, expressed"	Medtr5g011140.1	GMC oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.200462.1.S1_at	A	A1TS	POPTR_0001s08610	POPTR_0001s08610 (11)	scaffold_1:6560068-6560803(-) (11)	NA	Q96EN8	Molybdenum cofactor sulfurase	AT5G51920.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g43180.1	expressed protein	Medtr1g129690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200463.1.S1_at	A	A1TS	POPTR_0001s08590	POPTR_0001s08590 (11)	scaffold_1:6539342-6539820(-) (11)	NA	O64647	Transcription factor TCP9	AT2G45680.1	TCP family transcription factor  	LOC_Os08g43160.1	"TCP family transcription factor, putative, expressed"	Medtr1g129720.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200464.1.S1_at	A	A1TS	POPTR_0001s08530	POPTR_0001s08530 (11)	scaffold_1:6499987-6501436(+) (11)	NA	Q5BJQ2	Protein FAM63A	AT4G11860.1	Protein of unknown function (DUF544)      	LOC_Os06g49800.1	"ubiquitin interaction motif family protein, expressed"	Medtr5g011220.1	Protein of unknown function DUF544 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200465.1.S1_at	A	A1TS	POPTR_0001s08440	POPTR_0001s08440 (9)	scaffold_1:6439645-6440182(+) (11)	NA	NA	NA	AT4G22900.1	Protein of unknown function (DUF1191) 	LOC_Os12g02550.1	expressed protein	Medtr3g016260.1	Protein of unknown function DUF1191 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200466.1.S1_at	A	A1TS	POPTR_0001s08430	POPTR_0001s08430 (9)	scaffold_1:6436866-6437770(+) (11)	NA	Q9LN94	Expansin-A7	AT1G12560.1	expansin A7 	LOC_Os10g39110.1	"expansin precursor, putative"	Medtr5g011340.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200467.1.S1_at	A	A1TS	POPTR_0001s08380	POPTR_0001s08380 (11)	scaffold_1:6393608-6394490(+) (11)	NA	Q9LQ08	Transcription factor bHLH125	AT1G62975.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr1g130320.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.200469.1.S1_s_at	A	A1TS	POPTR_0001s08340	POPTR_0001s08340 (11)	scaffold_1:6366888-6367342(+) (11)	NA	O65351	Subtilisin-like protease	AT1G04110.1	Subtilase family protein 	LOC_Os04g47160.1	"OsSub44 - Putative Subtilisin homologue, expressed"	Medtr5g011380.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.200470.1.S1_at	A	A1MS	POPTR_0001s08280	POPTR_0001s08280 (10)	scaffold_1:6317005-6317588(-) (10)	NA	NA	NA	AT1G12480.1	C4-dicarboxylate transporter/malic acid transport protein 	LOC_Os04g48530.1	"C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed"	Medtr8g106480.1	C4-dicarboxylate transporter/malic acid transport protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.200471.1.S1_at	A	A1TS	POPTR_0001s08270	POPTR_0001s08270 (11)	scaffold_1:6315224-6316520(+) (11)	NA	NA	NA	AT4G22860.1	Cell cycle regulated microtubule associated protein 	LOC_Os06g03980.1	expressed protein	Medtr8g106490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200472.1.S1_at	A	A1TS	POPTR_0001s08260	POPTR_0001s08260 (11)	scaffold_1:6305248-6305552(+) (11)	NA	C0LGE4	Probable LRR receptor-like serine/threonine-protein kinase At1g12460	AT1G12460.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g03570.2	"leucine-rich repeat transmembrane protein kinase, putative, expressed"	Medtr5g011540.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.200472.1.S1_x_at	A	A1TS	POPTR_0001s08260	POPTR_0001s08260 (11)	scaffold_1:6304999-6305552(+) (11)	NA	C0LGE4	Probable LRR receptor-like serine/threonine-protein kinase At1g12460	AT1G12460.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g03570.2	"leucine-rich repeat transmembrane protein kinase, putative, expressed"	Medtr5g011540.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.200473.1.S1_at	A	A1TS	POPTR_0001s08240	POPTR_0001s08240 (10)	scaffold_1:6287860-6289068(-) (10)	NA	NA	NA	AT4G22840.1	Sodium Bile acid symporter family 	LOC_Os09g34900.1	"bile acid sodium symporter family protein, putative, expressed"	Medtr5g011580.1	Bile acid:sodium symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200474.1.S1_at	A	A1TS	POPTR_0001s08200	POPTR_0001s08200 (11)	scaffold_1:6257550-6259094(-) (11)	NA	Q9FZ06	Armadillo repeat-containing kinesin-like protein 3	AT1G12430.1	armadillo repeat kinesin 3 	LOC_Os06g04560.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.200475.1.S1_at	A	A1TS	POPTR_0001s08190	POPTR_0001s08190 (11)	scaffold_1:6250369-6250768(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT4G22810.1	Predicted AT-hook DNA-binding family protein 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	Medtr5g011670.1	Protein of unknown function DUF296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200476.1.S1_at	A	A1TS	POPTR_0001s08170	POPTR_0001s08170 (11)	scaffold_1:6228903-6230264(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200477.1.S1_s_at	A	A1TS	POPTR_0001s08160	POPTR_0001s08160 (11)	scaffold_1:6220429-6220728(-) (11)	NA	Q8K0H1	Multidrug and toxin extrusion protein 1	AT4G22790.1	MATE efflux family protein 	LOC_Os03g64150.1	"MATE efflux family protein, putative, expressed"	Medtr5g011710.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.200478.1.S1_at	A	A1TS	POPTR_0001s16860	POPTR_0001s16860 (10)	scaffold_1:13669536-13669710(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200479.1.S1_at	A	A1TS	POPTR_0001s16870	POPTR_0001s16870 (11)	scaffold_1:13676326-13677192(+) (11)	NA	Q9BV23	Monoacylglycerol lipase ABHD6	AT1G17430.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g08110.1	"hydrolase protein, putative, expressed"	Medtr3g139140.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200480.1.S1_at	A	A1TS	POPTR_0001s16890	POPTR_0001s16890 (11)	scaffold_1:13681193-13681684(-) (11)	NA	Q4VYC8	Nodulation-signaling pathway 1 protein	AT3G13840.1	GRAS family transcription factor 	LOC_Os03g29480.1	"nodulation-signaling pathway 1 protein, putative, expressed"	Medtr8g025000.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200481.1.S1_at	A	A1TS	POPTR_0001s16900	POPTR_0001s16900 (11)	scaffold_1:13684016-13684945(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200482.1.S1_at	A	A1TA	POPTR_0001s16930	POPTR_0001s16930 (10)	scaffold_1:13724697-13725039(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200484.1.S1_at	A	A1TS	POPTR_0001s16950	POPTR_0001s16950 (11)	scaffold_1:13749502-13749634(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200484.1.S1_x_at	A	A1TS	POPTR_0001s16950	POPTR_0001s16950 (11)	scaffold_1:13749459-13749630(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200485.1.S1_at	A	A1TS	POPTR_0001s16960	POPTR_0001s16960 (11)	scaffold_1:13770610-13771044(-) (11)	NA	Q1PFE1	AP2-like ethylene-responsive transcription factor AIL1	AT1G72570.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g07940.1	"AP2 domain containing protein, expressed"	Medtr8g024670.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200486.1.S1_at	A	A1TS	POPTR_0001s16990	POPTR_0001s16990 (11)	scaffold_1:13808470-13808846(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200487.1.S1_at	A	A1TS	POPTR_0001s17000	POPTR_0001s17000 (11)	scaffold_1:13811245-13814380(-) (11)	NA	Q8VE65	Transcription initiation factor TFIID subunit 12	AT1G17440.2	Transcription initiation factor TFIID subunit A 	LOC_Os01g62820.3	"Transcription initiation factor TFIID subunit A containing protein, expressed"	Medtr8g024640.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006352|transcription initiation||GO:0006461|protein complex assembly	GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
PtpAffx.200488.1.S1_at	A	A1TS	POPTR_0001s17050	POPTR_0001s17050 (11)	scaffold_1:13900190-13900888(-) (11)	NA	NA	NA	AT1G54200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits to 581 proteins in 136 species: Archae - 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink). 	LOC_Os03g07920.1	expressed protein	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200489.1.S1_at	A	A1TS	POPTR_0001s17080	POPTR_0001s17080 (10)	scaffold_1:13938445-13939216(-) (11)	NA	Q8GYL9	Protein Brevis radix-like 2	AT3G14000.2	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20049.1.S1_at	A	A1TS	POPTR_0002s23650	POPTR_0002s23650 (11)	scaffold_2:21185474-21185906(+) (11)	NA	Q9SRT2	Transcription factor bHLH62	AT3G07340.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr8g012630.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.200491.1.S1_at	A	A1TS	POPTR_0001s17210	POPTR_0001s17210 (11)	scaffold_1:14051579-14052069(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g10900.1	"NB-ARC domain containing protein, expressed"	Medtr3g025830.1	NB-ARC; PKC-activated phosphatase-1 inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200492.1.S1_at	A	A1TS	POPTR_0001s17260	POPTR_0001s17260 (9)	scaffold_1:14079304-14080365(+) (11)	NA	NA	NA	AT3G49890.1	unknown protein; Has 27 Blast hits to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g10410.1	expressed protein	Medtr8g101560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200493.1.S1_at	A	A1TS	POPTR_0001s17330	POPTR_0001s17330 (11)	scaffold_1:14142574-14143147(+) (11)	NA	NA	NA	AT3G25910.1	Protein of unknown function (DUF1644) 	LOC_Os01g42700.4	expressed protein	Medtr4g134230.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200494.1.S1_at	A	A1TS	POPTR_0001s17350	POPTR_0001s17350 (11)	scaffold_1:14160921-14161394(+) (11)	NA	Q95QD7	Protein lin-54	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr1g013510.1	"Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200497.1.S1_at	A	A1TS	POPTR_0001s17400	POPTR_0001s17400 (11)	scaffold_1:14200215-14204634(+) (11)	NA	O43933	Peroxisome biogenesis factor 1	AT5G08470.1	peroxisome 1 	LOC_Os08g44240.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g115030.1	AAA ATPase 	GO:0007031|peroxisome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0005777|peroxisome
PtpAffx.200498.1.S1_at	A	A1TS	POPTR_0001s17430	POPTR_0001s17430 (11)	scaffold_1:14227852-14227995(+) (11)	NA	NA	NA	AT5G25460.1	"Protein of unknown function, DUF642 "	LOC_Os01g42520.1	expressed protein	Medtr2g125750.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200498.1.S1_s_at	A	A1TS	POPTR_0001s17430	POPTR_0001s17430 (11)	scaffold_1:14228015-14228402(+) (11)	NA	NA	NA	AT5G25460.1	"Protein of unknown function, DUF642 "	LOC_Os01g42520.1	expressed protein	Medtr2g125750.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200499.1.S1_at	A	A1TS	POPTR_0001s17440	POPTR_0001s17440 (11)	scaffold_1:14229599-14230624(-) (11)	NA	Q9XI23	Boron transporter 4	AT1G15460.1	HCO3- transporter family 	LOC_Os01g08020.1	"boron transporter protein, putative, expressed"	Medtr2g125700.1	"HCO3- transporter, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2005.1.A1_at	A	A1MS	POPTR_0003s08440	POPTR_0003s08440 (9)	scaffold_3:9852393-9852840(-) (9)	NA	NA	NA	AT5G47020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g10380.1	"glycine-rich protein, putative, expressed"	Medtr5g014010.1	"glycine-rich protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200500.1.S1_at	A	A1TS	POPTR_0001s17460	POPTR_0001s17460 (10)	scaffold_1:14251373-14252736(-) (11)	NA	NA	NA	AT3G15605.4	nucleic acid binding 	LOC_Os01g42460.1	"BAH domain containing protein, expressed"	Medtr2g080340.1	Bromo adjacent region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200501.1.S1_at	A	A1TS	POPTR_0001s17470	POPTR_0001s17470 (11)	scaffold_1:14257122-14257562(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200502.1.S1_s_at	A	A1TS	POPTR_0001s17480	POPTR_0001s17480 (11)	scaffold_1:14264732-14266488(-) (11)	NA	NA	NA	AT1G80280.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g45960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr2g123630.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200503.1.S1_at	A	A1TS	POPTR_0001s17490	POPTR_0001s17490 (11)	scaffold_1:14284300-14284665(+) (11)//scaffold_755:4072-4437(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200504.1.S1_s_at	A	A1MS	POPTR_0001s17530	POPTR_0001s17530 (10)	scaffold_1:14323476-14324896(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200505.1.S1_s_at	A	A1TS	POPTR_0001s17540	POPTR_0001s17540 (11)	scaffold_1:14326834-14328051(+) (11)	NA	Q9FMF5	Root phototropism protein 3	AT1G52770.1	Phototropic-responsive NPH3 family protein 	LOC_Os05g08530.1	"phototropic-responsive NPH3 family protein, putative, expressed"	Medtr2g123600.1	NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.200506.1.S1_s_at	A	A1TS	POPTR_0001s17550	POPTR_0001s17550 (11)	scaffold_1:14332437-14333622(-) (11)	NA	NA	NA	AT3G15550.1	unknown protein; Has 25732 Blast hits to 16979 proteins in 961 species: Archae - 144; Bacteria - 1801; Metazoa - 12681; Fungi - 1868; Plants - 912; Viruses - 94; Other Eukaryotes - 8232 (source: NCBI BLink). 	LOC_Os01g08150.1	expressed protein	Medtr2g123560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200507.1.S1_at	A	A2TS	POPTR_0001s17580	POPTR_0001s17580 (11)//POPTR_0001s17610 (9)	scaffold_1:14382793-14383462(+) (11)//scaffold_1:14417631-14417694(+) (9)	NA	Q9C6I4	Gibberellin 2-beta-dioxygenase 7	AT1G52820.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr7g107560.1	Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.200508.1.S1_s_at	A	A2TS	POPTR_0001s17580	POPTR_0001s17580 (11)//POPTR_0001s17610 (9)	scaffold_1:14382433-14383364(+) (11)//scaffold_1:14416665-14417596(+) (11)	NA	Q9C6I4	Gibberellin 2-beta-dioxygenase 7	AT1G52820.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr7g107560.1	Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.200509.1.S1_at	A	A1TS	POPTR_0001s17630	POPTR_0001s17630 (11)	scaffold_1:14436217-14436840(+) (11)	NA	O04705	Gibberellin 20 oxidase 1-D	AT1G52800.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr7g107560.1	Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.200510.1.S1_at	A	A1TS	POPTR_0001s17640	POPTR_0001s17640 (11)	scaffold_1:14452894-14453791(+) (11)	NA	Q39110	Gibberellin 20 oxidase 1	AT1G52820.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr7g107560.1	Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.200511.1.S1_at	A	A1TS	POPTR_0001s17650	POPTR_0001s17650 (11)	scaffold_1:14460175-14460730(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200512.1.S1_s_at	A	A1TS	POPTR_0001s17660	POPTR_0001s17660 (11)	scaffold_1:14468217-14468707(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200513.1.S1_at	A	A1TS	POPTR_0001s17670	POPTR_0001s17670 (11)	scaffold_1:14483333-14484269(+) (11)	NA	Q39110	Gibberellin 20 oxidase 1	AT1G52800.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr7g107560.1	Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.200514.1.S1_at	A	A1TS	POPTR_0001s17700	POPTR_0001s17700 (11)	scaffold_1:14551700-14553406(-) (11)	NA	NA	NA	AT4G14746.1	CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os11g37210.1	"MTN26L5 - MtN26 family protein precursor, expressed"	Medtr7g140750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200516.1.S1_at	A	A1TS	POPTR_0001s17730	POPTR_0001s17730 (11)	scaffold_1:14591289-14593003(+) (11)	NA	Q9C968	Cyclin-A2-4	AT1G80370.1	Cyclin A2;4 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr2g123440.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.200518.1.S1_at	A	A1TS	POPTR_0001s17810	POPTR_0001s17810 (11)	scaffold_1:14691549-14692768(-) (11)//scaffold_1:14746764-14752652(-) (9)	NA	Q9DBB4	"N-alpha-acetyltransferase 16, NatA auxiliary subunit"	AT1G80410.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g43030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g123340.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200519.1.S1_at	A	A2TS	POPTR_0001s17800	POPTR_0001s17830 (11)//POPTR_0001s17800 (11)	scaffold_1:14676782-14676869(-) (11)//scaffold_1:14743315-14743402(-) (11)	NA	Q5R4J9	"N-alpha-acetyltransferase 15, NatA auxiliary subunit"	AT1G80410.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g43030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g123340.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200519.1.S1_s_at	A	A2TS	POPTR_0001s17800	POPTR_0001s17830 (11)//POPTR_0001s17800 (11)	scaffold_1:14676672-14677636(-) (11)//scaffold_1:14743205-14744175(-) (11)	NA	Q5R4J9	"N-alpha-acetyltransferase 15, NatA auxiliary subunit"	AT1G80410.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g43030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g123340.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200520.1.S1_at	A	A1TS	POPTR_0001s17840	POPTR_0001s17840 (11)	scaffold_1:14778900-14780977(-) (11)	NA	Q9ESZ0	DNA repair protein XRCC1	AT1G80420.3	BRCT domain-containing DNA repair protein 	LOC_Os06g05190.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr2g123320.1	BRCT 	NA	NA	GO:0005622|intracellular
PtpAffx.200521.1.S1_at	A	A1MS	POPTR_0001s17850	POPTR_0001s17850 (10)	scaffold_1:14786643-14787723(+) (11)	NA	NA	NA	AT1G15660.1	centromere protein C 	LOC_Os01g43050.1	"CENP-C1, putative, expressed"	Medtr6g083920.1	"CENP-C, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200522.1.S1_at	A	A1TS	POPTR_0001s17880	POPTR_0001s17880 (11)	scaffold_1:14807526-14808039(+) (11)	NA	Q9LMR5	F-box/kelch-repeat protein At1g15670	AT1G15670.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os06g39370.1	"OsFBK16 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g123270.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200523.1.S1_at	A	A1TS	POPTR_0001s17890	POPTR_0001s17890 (11)	scaffold_1:14809988-14811979(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200524.1.S1_at	A	A1TS	POPTR_0001s17900	POPTR_0001s17900 (11)	scaffold_1:14814182-14815299(-) (11)	NA	P61817	Sirohydrochlorin ferrochelatase	AT1G50170.1	sirohydrochlorin ferrochelatase B 	LOC_Os02g19440.1	"sirohydrochlorin ferrochelatase, putative, expressed"	Medtr6g005330.2	Cobalamin (vitamin B12) biosynthesis CbiX protein 	GO:0009236|cobalamin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity||GO:0046872|metal ion binding	NA
PtpAffx.200525.1.S1_at	A	A1TS	POPTR_0001s17910	POPTR_0001s17910 (9)	scaffold_1:14833117-14835380(+) (9)	NA	NA	NA	AT1G80000.2	CASC3/Barentsz eIF4AIII binding 	LOC_Os01g41190.2	"glycine-rich protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200526.1.S1_at	A	A1TS	POPTR_0001s17920	POPTR_0001s17920 (11)	scaffold_1:14856764-14857126(+) (11)	NA	NA	NA	AT3G15940.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g15780.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
PtpAffx.200527.1.S1_s_at	A	A2TS	POPTR_0001s17940	POPTR_0001s17940 (11)//POPTR_0003s05500 (11)	scaffold_1:14878383-14878556(-) (11)//scaffold_3:6801779-6801950(+) (11)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.1	"coatomer subunit beta, putative, expressed"	AC234703_19.3	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.200528.1.S1_at	A	A1TS	POPTR_0001s17960	POPTR_0001s17960 (11)	scaffold_1:14940932-14941912(+) (11)	NA	Q9LW86	Probable sulfate transporter 3.4	AT3G15990.1	sulfate transporter 3;4 	LOC_Os06g05160.1	"sulfate transporter, putative, expressed"	AC234703_12.1	Sulphate anion transporter AC234703.1 74838-69482 E EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.200529.1.S1_at	A	A1TS	POPTR_0001s17980	POPTR_0001s17980 (11)	scaffold_1:14955350-14955934(-) (11)	NA	Q9M7J4	MAR-binding filament-like protein 1-1	AT3G16000.1	MAR binding filament-like protein 1 	LOC_Os01g08510.1	"MAR-binding filament-like protein 1, putative, expressed"	Medtr4g073020.1	"Helix-turn-helix, AraC type; Prefoldin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200530.1.S1_at	A	A1TS	POPTR_0001s17990	POPTR_0001s17990 (11)	scaffold_1:14969258-14969882(-) (11)	NA	NA	NA	AT5G11460.1	Protein of unknown function (DUF581) 	LOC_Os01g08520.1	"DUF581 domain containing protein, expressed"	AC234703_11.1	Protein of unknown function DUF581 AC234703.1 65311-68302 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200531.1.S1_at	A	A1TS	POPTR_0001s18000	POPTR_0001s18000 (11)	scaffold_1:14990383-14990949(+) (11)	NA	NA	NA	AT3G24490.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os01g52090.2	"transcription factor like protein, putative, expressed"	AC234703_9.1	"Myb, DNA-binding AC234703.1 59278-57295 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200532.1.S1_at	A	A1TS	POPTR_0001s18010	POPTR_0001s18010 (11)	scaffold_1:14991541-14992479(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200533.1.S1_at	A	A1TS	POPTR_0001s18030	POPTR_0001s18030 (11)	scaffold_1:14999920-15000503(-) (11)	NA	Q9LW84	Pentatricopeptide repeat-containing protein At3g16010	AT3G16010.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os02g16650.1	"PPR repeat domain containing protein, putative, expressed"	AC234703_7.1	"pentatricopeptide, related AC234703.1 43858-47785 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200536.1.S1_at	A	A1TS	POPTR_0001s18050	POPTR_0001s18050 (11)	scaffold_1:15045529-15047804(+) (11)	NA	A4K436	Regulator of telomere elongation helicase 1	AT1G79950.1	RAD3-like DNA-binding helicase protein 	LOC_Os01g40980.1	"helicase, putative, expressed"	AC234703_2.1	"Xeroderma pigmentosum group D protein; ATP-dependent helicase, DEAH-box; ; AC234703.1 26378-15197 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004003|ATP-dependent DNA helicase activity	NA
PtpAffx.200537.1.S1_at	A	A1TS	POPTR_0001s18070	POPTR_0001s18070 (11)	scaffold_1:15058601-15059063(-) (11)	NA	NA	NA	AT1G79960.1	ovate family protein 14 	LOC_Os01g40970.1	DUF623 domain containing protein	AC234703_1.1	Uncharacterized plant-specific domain AC234703.1 12561-14547 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200538.1.S1_at	A	A1TS	POPTR_0001s18080	POPTR_0001s18080 (11)	scaffold_1:15066989-15067338(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g008790.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200540.1.S1_s_at	A	A8TS	POPTR_0001s23060	POPTR_0001s23120 (11)//POPTR_0001s23110 (11)//POPTR_0002s21830 (11)//POPTR_0001s23100 (11)//POPTR_0001s23060 (11)//POPTR_0001s23130 (11)//POPTR_0001s23090 (9)//POPTR_0613s00200 (9)	scaffold_1:22144732-22145259(+) (11)//scaffold_1:22257334-22258066(+) (9)//scaffold_1:22287900-22288435(-) (11)//scaffold_1:22297948-22298483(-) (11)//scaffold_1:22329354-22329885(-) (11)//scaffold_1:22372106-22372637(-) (11)//scaffold_2:18528154-18528685(+) (11)//scaffold_613:11188-11724(-) (9)	POPTR_2696s00200 (6)	Q5Z9Z0	Beta-glucosidase 24	AT3G60120.1	beta glucosidase 27 	LOC_Os04g39864.4	"Os4bglu11 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr3g040460.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200541.1.S1_s_at	A	A6TS	POPTR_0001s23100	POPTR_0001s23120 (11)//POPTR_0001s23110 (11)//POPTR_0613s00200 (11)//POPTR_0002s21830 (11)//POPTR_0001s23100 (11)//POPTR_0001s23130 (11)	scaffold_1:22145322-22145791(+) (10)//scaffold_1:22258129-22258599(+) (9)//scaffold_1:22287384-22287837(-) (11)//scaffold_1:22297419-22297885(-) (11)//scaffold_1:22328834-22329291(-) (11)//scaffold_1:22371589-22372043(-) (11)//scaffold_2:18528748-18529215(+) (11)//scaffold_613:10659-11125(-) (11)	POPTR_0001s23060 (6)	Q7XKV4	Beta-glucosidase 12	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39864.4	"Os4bglu11 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200542.1.S1_at	A	A1MS	POPTR_0001s23150	POPTR_0001s23150 (10)	scaffold_1:22421012-22421515(+) (10)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os12g06740.2	"OsFBX440 - F-box domain containing protein, expressed"	Medtr5g027510.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200543.1.S1_at	A	A1TS	POPTR_0001s23155	POPTR_0001s23155 (11)	scaffold_1:22423574-22424149(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g073120.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200544.1.S1_at	A	A1TS	POPTR_0001s23170	POPTR_0001s23170 (11)	scaffold_1:22430304-22430547(+) (11)	NA	A2WW87	Transcription factor GAMYB	AT3G11440.1	myb domain protein 65 	LOC_Os01g59660.2	"MYB family transcription factor, putative, expressed"	Medtr1g025180.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200544.1.S1_s_at	A	A2TS	POPTR_0009s02380	POPTR_0009s02380 (11)//POPTR_0001s23170 (10)	scaffold_1:22430333-22430527(+) (10)//scaffold_9:3124448-3126515(-) (11)	NA	Q0JIC2	Transcription factor GAMYB	AT5G06100.3	myb domain protein 33 	LOC_Os01g59660.2	"MYB family transcription factor, putative, expressed"	Medtr1g025180.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200545.1.S1_at	A	A1TS	POPTR_0001s23180	POPTR_0001s23180 (11)	scaffold_1:22440499-22440916(+) (11)	NA	NA	NA	AT5G56200.1	C2H2 type zinc finger transcription factor family 	NA	NA	Medtr2g122790.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.200546.1.S1_at	A	A1TS	POPTR_0001s23200	POPTR_0001s23200 (11)	scaffold_1:22489807-22490768(+) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT5G56790.1	Protein kinase superfamily protein 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	AC233661_2.1	Protein kinase-like AC233661.2 12270-6498 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200548.1.S1_at	A	A1TS	POPTR_0001s23250	POPTR_0001s23250 (11)	scaffold_1:22523625-22525109(+) (11)	NA	Q3UJZ3	Armadillo repeat-containing protein 7	AT5G37290.1	ARM repeat superfamily protein 	LOC_Os11g34364.1	"armadillo/beta-catenin-like repeat containing protein, expressed"	Medtr5g084910.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200549.1.S1_at	A	A1TS	POPTR_0001s23280	POPTR_0001s23280 (11)	scaffold_1:22540286-22541529(-) (11)	NA	Q9FQ19	Sister chromatid cohesion 1 protein 3	AT3G59550.1	Rad21/Rec8-like family protein 	LOC_Os08g16610.1	"Rad21 / Rec8 like protein, putative, expressed"	Medtr3g013230.1	"Rad21/Rec8 like protein, C-terminal; Rad21/Rec8 like protein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200550.1.S1_at	A	A1TS	POPTR_0001s23290	POPTR_0001s23290 (11)	scaffold_1:22549198-22549659(-) (11)	NA	Q9ZU38	Probable ribose-5-phosphate isomerase	AT2G01290.1	ribose-5-phosphate isomerase 2 	LOC_Os07g08030.1	"ribose-5-phosphate isomerase A, putative, expressed"	Medtr1g137480.1	Ribose 5-phosphate isomerase 	"GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0009052|""pentose-phosphate shunt, non-oxidative branch"""	GO:0004751|ribose-5-phosphate isomerase activity	NA
PtpAffx.200551.1.S1_at	A	A2TS	POPTR_0001s23330	POPTR_0001s23330 (11)//POPTR_0001s23310 (10)	scaffold_1:22632941-22634167(+) (10)//scaffold_1:22674647-22675873(+) (11)	NA	Q5Z9Z0	Beta-glucosidase 24	AT3G60130.1	beta glucosidase 16 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200552.1.S1_at	A	A1TS	POPTR_0001s23320	POPTR_0001s23320 (11)	scaffold_1:22641542-22642502(+) (11)	POPTR_0001s23350 (7)	Q75W17	Furcatin hydrolase	AT5G24550.1	beta glucosidase 32 	LOC_Os04g39880.1	"Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200553.1.S1_s_at	A	A1TS	POPTR_0001s23390	POPTR_0001s23390 (11)	scaffold_1:22733867-22734319(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200554.1.S1_at	A	A1TS	POPTR_0001s22150	POPTR_0001s22150 (11)	scaffold_1:20796821-20797931(-) (11)	NA	NA	NA	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200555.1.S1_at	A	A1TS	POPTR_0001s22140	POPTR_0001s22140 (10)	scaffold_1:20788506-20789385(-) (11)	NA	P35601	Replication factor C subunit 1	AT5G22010.1	replication factor C1 	LOC_Os03g15580.1	"AT hook motif family protein, expressed"	Medtr1g037360.1	"nucleoside-triphosphatase/ nucleotide binding, related "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
PtpAffx.200556.1.S1_at	A	A1TS	POPTR_0001s22130	POPTR_0001s22130 (11)	scaffold_1:20774692-20775048(+) (11)	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.3	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200558.1.S1_s_at	A	A1TS	POPTR_0001s22070	POPTR_0001s22070 (11)	scaffold_1:20688549-20689191(+) (11)	POPTR_0001s22060 (7)	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.2	Serine carboxypeptidase S28 family protein 	LOC_Os11g05760.1	"OsProCP5 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.200559.1.S1_at	A	A1TS	POPTR_0001s22070	POPTR_0001s22070 (11)	scaffold_1:20689202-20689311(+) (11)	NA	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.2	Serine carboxypeptidase S28 family protein 	LOC_Os11g05760.1	"OsProCP5 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.200560.1.S1_at	A	A1TS	POPTR_0001s22010	POPTR_0001s22010 (11)	scaffold_1:20596667-20600196(-) (11)	NA	Q96JG6	Coiled-coil domain-containing protein 132	AT2G27900.2	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os10g39910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200561.1.S1_at	A	A1TS	POPTR_0001s21990	POPTR_0001s21990 (11)	scaffold_1:20588948-20589153(-) (11)	NA	NA	NA	AT2G27930.1	PLATZ transcription factor family protein 	LOC_Os08g44620.1	"zinc-binding protein, putative, expressed"	Medtr1g074250.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.200561.1.S1_s_at	A	A1TS	POPTR_0001s21990	POPTR_0001s21990 (11)	scaffold_1:20589059-20589917(-) (11)	NA	NA	NA	AT2G27930.1	PLATZ transcription factor family protein 	LOC_Os08g44620.1	"zinc-binding protein, putative, expressed"	Medtr1g074250.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.200562.1.S1_at	A	A1TS	POPTR_0001s21970	POPTR_0001s21970 (10)	scaffold_1:20549993-20550412(-) (11)	NA	Q9SGE3	Histone H2B.2	AT1G08170.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.200563.1.S1_at	A	A1TS	POPTR_0001s21960	POPTR_0001s21960 (10)	scaffold_1:20546061-20546433(-) (11)	NA	Q9SJJ7	RING-H2 finger protein ATL57	AT2G27940.1	RING/U-box superfamily protein 	LOC_Os09g29310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200564.1.S1_at	A	A1TS	POPTR_0001s21955	POPTR_0001s21955 (10)	scaffold_1:20536956-20537781(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200565.1.S1_at	A	A1TS	POPTR_0001s21950	POPTR_0001s21950 (11)	scaffold_1:20530169-20531985(-) (11)	NA	Q54Z26	Serine hydroxymethyltransferase 1	AT1G22020.1	serine hydroxymethyltransferase 6 	LOC_Os01g65410.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr2g006550.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.200566.1.S1_at	A	A1TS	POPTR_0001s21930	POPTR_0001s21930 (11)	scaffold_1:20429079-20430214(-) (11)	NA	Q80Y75	DnaJ homolog subfamily B member 13	AT1G11040.1	HSP40/DnaJ peptide-binding protein 	LOC_Os01g65480.1	"dnaJ domain containing protein, expressed"	Medtr2g006960.1	"Chaperone DnaJ, C-terminal "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	NA
PtpAffx.200567.1.S1_at	A	A1TS	POPTR_0001s21910	POPTR_0001s21910 (11)	scaffold_1:20400215-20400948(-) (11)	NA	NA	NA	AT1G71190.1	senescence associated gene 18 	LOC_Os01g73120.1	expressed protein	Medtr2g006780.1	Protein phosphatase 2C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200568.1.S1_at	A	A1TS	POPTR_0001s21900	POPTR_0001s21900 (11)	scaffold_1:20387483-20388056(+) (11)	NA	O34948	Uncharacterized oxidoreductase ykwC	AT1G71180.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os05g49070.1	"dehydrogenase, putative, expressed"	Medtr4g137510.1	"Sugar transporter superfamily; 6-phosphogluconate dehydrogenase, NAD-binding; Phosphate-induced protein 1 conserved region; 6-phosphogluconate dehydrogenase, C-terminal-like; "	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.200569.1.S1_at	A	A1TS	POPTR_0001s21880	POPTR_0001s21880 (11)	scaffold_1:20376759-20379531(+) (11)	NA	Q0WVV0	"Pentatricopeptide repeat-containing protein At1g10910, chloroplastic"	AT1G10910.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g37870.4	"PPR repeat domain containing protein, putative, expressed"	Medtr2g007110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200570.1.S1_at	A	A1TS	POPTR_0001s21810	POPTR_0001s21810 (10)	scaffold_1:20308670-20309145(-) (10)	NA	NA	NA	AT1G10790.1	BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.2); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g28110.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g105620.1	"Putative RING zinc finger protein-, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200571.1.S1_at	A	A1TS	POPTR_0001s21800	POPTR_0001s21800 (10)	scaffold_1:20301614-20301664(-) (10)	NA	NA	NA	AT5G24690.1	Protein of unknown function (DUF3411) 	LOC_Os12g18630.1	expressed protein	Medtr2g095320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200572.1.S1_at	A	A1TS	POPTR_0001s21700	POPTR_0001s21700 (11)	scaffold_1:20239247-20239830(-) (11)	NA	Q9FHK7	Probable leucine-rich repeat receptor-like protein kinase At5g05160	AT5G05160.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g07810.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr2g008790.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200574.1.S1_at	A	A1TS	POPTR_0001s21650	POPTR_0001s21650 (11)	scaffold_1:20175214-20175767(-) (11)	NA	Q9FJ21	Probable pectinesterase/pectinesterase inhibitor 58	AT5G49180.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os04g38560.1	"pectinesterase, putative, expressed"	Medtr1g105940.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.200575.1.S1_at	A	A1TS	POPTR_0001s21630	POPTR_0001s21630 (11)	scaffold_1:20155870-20156427(-) (11)	NA	Q9SMY6	Putative pectinesterase/pectinesterase inhibitor 45	AT4G33230.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os04g38560.1	"pectinesterase, putative, expressed"	Medtr1g105930.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.200576.1.S1_s_at	A	A1TS	POPTR_0011s09780	POPTR_0011s09780 (11)	scaffold_1:20132463-20133008(-) (11)//scaffold_11:12213278-12213826(-) (11)	NA	Q9NXF1	Testis-expressed sequence 10 protein	AT5G06350.1	ARM repeat superfamily protein 	LOC_Os04g39220.1	expressed protein	Medtr5g027520.1	"Rad51, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200577.1.S1_at	A	A1TS	POPTR_0001s21600	POPTR_0001s21600 (11)	scaffold_1:20106668-20109849(-) (11)	NA	O14777	Kinetochore protein NDC80 homolog	AT3G54630.1	CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink). 	LOC_Os08g36490.1	"kinetochore protein, putative, expressed"	Medtr2g034120.1	HEC/Ndc80p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200578.1.S1_at	A	A1TS	POPTR_0001s21580	POPTR_0001s21580 (11)	scaffold_1:20083538-20083744(-) (11)	NA	Q9C9F0	Probable WRKY transcription factor 9	AT1G68150.1	WRKY DNA-binding protein 9 	LOC_Os01g14440.1	"OsWRKY1v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g009100.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.200580.1.S1_at	A	A1TS	POPTR_0001s21520	POPTR_0001s21520 (11)	scaffold_1:20009263-20009529(-) (11)	NA	P43255	COP9 signalosome complex subunit 8	AT4G14110.1	"COP9 signalosome, subunit CSN8 "	LOC_Os04g34930.1	"COP9 signalosome complex subunit 8, putative, expressed"	Medtr2g007990.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200581.1.S1_at	A	A1TS	POPTR_0001s21500	POPTR_0001s21500 (11)	scaffold_1:19982292-19983900(-) (11)	NA	Q6ZRS2	Helicase SRCAP	AT3G12810.1	SNF2 domain-containing protein / helicase domain-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200582.1.S1_s_at	A	A2TS	POPTR_0001s21490	POPTR_0001s21490 (11)//POPTR_0003s01670 (11)	scaffold_1:19975617-19976885(-) (11)//scaffold_3:1537266-1538534(+) (11)	NA	Q6FK48	Helicase SWR1	AT3G12810.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os02g46450.2	"helicase conserved C-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.200583.1.S1_at	A	A1TS	POPTR_0001s21490	POPTR_0001s21490 (11)	scaffold_1:19970627-19971703(-) (11)	NA	Q6FK48	Helicase SWR1	AT3G12810.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os02g46450.2	"helicase conserved C-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.200584.1.S1_at	A	A1TS	POPTR_0001s21480	POPTR_0001s21480 (11)	scaffold_1:19969163-19969601(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200585.1.S1_at	A	A1TS	POPTR_0001s21440	POPTR_0001s21440 (11)	scaffold_1:19924532-19925364(+) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT5G64530.1	xylem NAC domain 1 	LOC_Os02g34970.1	"no apical meristem protein, putative, expressed"	Medtr4g142900.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.200586.1.S1_s_at	A	A1TS	POPTR_0001s21410	POPTR_0001s21410 (11)	scaffold_1:19851290-19851616(+) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT5G64550.1	loricrin-related 	LOC_Os04g54830.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200588.1.S1_at	A	A1TS	POPTR_0001s21340	POPTR_0001s21340 (11)	scaffold_1:19757020-19758107(+) (11)	NA	NA	NA	AT5G64170.2	dentin sialophosphoprotein-related 	LOC_Os03g27019.6	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200589.1.S1_at	A	A1TS	POPTR_0001s21330	POPTR_0001s21330 (11)	scaffold_1:19735653-19738911(-) (11)	NA	NA	NA	AT5G09390.1	CD2-binding protein-related 	LOC_Os09g20590.1	"CD2-binding protein-related, putative, expressed"	Medtr2g008850.1	"CD2-binding protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20059.1.S1_at	A	A1TS	POPTR_0008s12220	POPTR_0008s12220 (11)	scaffold_8:7892775-7896111(-) (11)	NA	Q9ZSY2	Chaperone protein dnaJ 15	AT1G68370.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g32870.2	"heat shock protein DnaJ, putative, expressed"	Medtr1g140590.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.20059.2.S1_s_at	A	A1TS	POPTR_0010s13210	POPTR_0010s13210 (11)	scaffold_10:13081264-13081891(+) (11)	NA	Q9ZSY2	Chaperone protein dnaJ 15	AT1G68370.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g32870.2	"heat shock protein DnaJ, putative, expressed"	Medtr1g140590.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.200590.1.S1_at	A	A2TS	POPTR_0001s21310	POPTR_0001s21310 (11)//POPTR_0701s00010 (11)	scaffold_1:19696196-19696545(-) (11)//scaffold_701:10236-10585(-) (11)	NA	Q9FY75	Potassium transporter 7	AT5G09400.1	K+ uptake permease 7 	LOC_Os07g32530.1	"potassium transporter, putative, expressed"	Medtr2g008870.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.200591.1.S1_at	A	A1TS	POPTR_0001s21300	POPTR_0001s21300 (11)	scaffold_1:19694865-19695239(-) (11)//scaffold_701:8905-9279(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200592.1.S1_at	A	A1TS	POPTR_0001s21290	POPTR_0001s21290 (11)	scaffold_1:19682821-19686222(+) (11)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.3	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.1	"ATPase, E1-E2 type "	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.200592.1.S1_x_at	A	A1TS	POPTR_0001s21290	POPTR_0001s21290 (11)	scaffold_1:19682821-19686323(+) (11)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.3	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.1	"ATPase, E1-E2 type "	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.200593.1.S1_at	A	A1TS	POPTR_0001s21240	POPTR_0001s21240 (11)	scaffold_1:19625720-19629032(-) (11)	NA	Q8THJ1	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT5G09420.1	translocon at the outer membrane of chloroplasts 64-V 	LOC_Os02g51810.1	expressed protein	Medtr4g154900.1	Amidase; 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.200594.1.S1_at	A	A1TS	POPTR_0001s21230	POPTR_0001s21230 (11)	scaffold_1:19615553-19617553(-) (11)	NA	Q9LU77	Auxin efflux carrier component 2	AT5G57090.1	Auxin efflux carrier family protein 	LOC_Os06g12610.1	"auxin efflux carrier component, putative, expressed"	Medtr8g130020.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.200595.1.S1_at	A	A1TS	POPTR_0001s21220	POPTR_0001s21220 (11)	scaffold_1:19600016-19600558(+) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G02645.1	Plant protein of unknown function (DUF247) 	LOC_Os06g08120.1	"plant protein of unknown function domain containing protein, expressed"	Medtr4g006270.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200596.1.S1_at	A	A1TS	POPTR_0001s21150	POPTR_0001s21150 (11)	scaffold_1:19514063-19514573(-) (11)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT1G80510.1	Transmembrane amino acid transporter family protein 	LOC_Os06g43700.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200596.1.S1_s_at	A	A2TS	POPTR_0003s02370	POPTR_0003s02370 (11)//POPTR_0001s21150 (9)	scaffold_1:19514115-19514602(-) (9)//scaffold_3:2430102-2430629(-) (11)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT1G80510.1	Transmembrane amino acid transporter family protein 	LOC_Os06g43700.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200598.1.S1_at	A	A1TS	POPTR_0001s21110	POPTR_0001s21110 (11)	scaffold_1:19454460-19455862(+) (11)	NA	NA	NA	AT3G15820.1	phosphatidic acid phosphatase-related / PAP2-related 	LOC_Os06g40500.1	expressed protein	Medtr4g005630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200598.1.S1_x_at	A	A1TS	POPTR_0001s21110	POPTR_0001s21110 (11)	scaffold_1:19454460-19455862(+) (11)	NA	NA	NA	AT3G15820.1	phosphatidic acid phosphatase-related / PAP2-related 	LOC_Os06g40500.1	expressed protein	Medtr4g005630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200599.1.S1_s_at	A	A2TS	POPTR_0001s21040	POPTR_0001s21090 (11)//POPTR_0001s21040 (11)	scaffold_1:19337975-19338458(-) (11)//scaffold_1:19437953-19438436(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT3G15890.1	Protein kinase superfamily protein 	LOC_Os02g09359.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g126640.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2006.1.S1_at	A	A1TS	POPTR_0012s12110	POPTR_0012s12110 (11)	scaffold_12:12387647-12388140(+) (11)	NA	O81865	Protein PHLOEM PROTEIN 2-LIKE A1	AT4G19840.1	phloem protein 2-A1 	LOC_Os01g06500.2	"PHLOEM 2-LIKE A5, putative, expressed"	Medtr4g114610.1	"F-box protein PP2-B10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200605.1.S1_at	A	A1TS	POPTR_0001s21030	POPTR_0001s21030 (11)	scaffold_1:19318504-19319174(+) (11)	NA	Q8T295	Pre-mRNA-processing-splicing factor 8 homolog	AT1G80070.1	Pre-mRNA-processing-splicing factor 	LOC_Os06g07080.1	"pre-mRNA-processing-splicing factor 8, putative, expressed"	Medtr2g126650.1	"Mov34/MPN/PAD-1; PRO8NT; PROCN; PRO, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200606.1.S1_at	A	A1TS	POPTR_0001s18120	POPTR_0001s18120 (11)	scaffold_1:15167490-15168049(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g086670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200607.1.S1_at	A	A1TS	POPTR_0001s18130	POPTR_0001s18130 (11)	scaffold_1:15180107-15180662(-) (11)	NA	NA	NA	AT1G52320.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT5G25590.1); Has 8725 Blast hits to 7476 proteins in 620 species: Archae - 10; Bacteria - 622; Metazoa - 3286; Fungi - 1319; Plants - 1442; Viruses - 221; Other Eukaryotes - 1825 (source: NCBI BLink). "	LOC_Os01g31580.1	"BZIP protein, putative, expressed"	Medtr2g123100.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200608.1.S1_at	A	A1TS	POPTR_0001s18150	POPTR_0001s18150 (11)	scaffold_1:15200426-15202291(-) (11)	NA	Q9BUU2	Uncharacterized protein C16orf68	AT1G79915.1	Putative methyltransferase family protein 	LOC_Os06g43250.1	expressed protein	Medtr2g123090.1	"Uncharacterized protein C16orf68 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200609.1.S1_at	A	A1TS	POPTR_0001s18160	POPTR_0001s18160 (11)	scaffold_1:15207091-15208196(-) (11)	NA	Q54I39	IST1-like protein	AT1G79910.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os02g06430.1	"DUF292 domain containing protein, expressed"	Medtr4g158790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20061.1.S1_at	A	A1TS	POPTR_0014s02950	POPTR_0014s02950 (11)	scaffold_14:2430625-2431050(+) (11)	NA	P40781	Protein CYPRO4	AT4G33400.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g54780.1	"CYPRO4, putative, expressed"	Medtr3g147800.1	AMP-dependent synthetase and ligase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200610.1.S1_at	A	A1TS	POPTR_0001s18180	POPTR_0001s18180 (11)	scaffold_1:15236420-15236750(-) (11)	NA	Q9C9I2	Ethylene-responsive transcription factor ERF021	AT1G71450.1	Integrase-type DNA-binding superfamily protein 	LOC_Os11g13840.1	"AP2 domain containing protein, expressed"	Medtr5g008620.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.200611.1.S1_s_at	A	A2TS	POPTR_0001s18190	POPTR_0003s14590 (11)//POPTR_0001s18190 (11)	scaffold_1:15261086-15261372(-) (11)//scaffold_3:14620068-14620354(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200612.1.S1_at	A	A1TS	POPTR_0001s18230	POPTR_0001s18230 (11)	scaffold_1:15303684-15304231(+) (11)	NA	Q08DK7	Mitochondrial carnitine/acylcarnitine carrier protein CACL	AT1G79900.1	Mitochondrial substrate carrier family protein 	LOC_Os01g12520.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200613.1.S1_at	A	A1TS	POPTR_0001s18260	POPTR_0001s18260 (11)	scaffold_1:15333436-15333780(+) (11)	POPTR_0003s05270 (6)	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.200614.1.S1_at	A	A1TS	POPTR_0001s18270	POPTR_0001s18270 (11)	scaffold_1:15335914-15337483(+) (11)	NA	O81755	Putative Peroxidase 48	AT4G33870.1	Peroxidase superfamily protein 	LOC_Os01g51550.1	peroxidase family protein	Medtr4g009100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.200615.1.S1_at	A	A1TS	POPTR_0001s18280	POPTR_0001s18280 (11)	scaffold_1:15338203-15338779(-) (11)	NA	NA	NA	AT3G16070.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15260.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g009160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200616.1.S1_at	A	A1TS	POPTR_0001s18290	POPTR_0001s18290 (11)	scaffold_1:15342054-15343084(-) (11)	NA	A8MPP1	Putative ATP-dependent RNA helicase DDX11-like protein 8	AT1G79890.1	RAD3-like DNA-binding helicase protein 	LOC_Os05g13300.1	"helicase, putative, expressed"	Medtr4g009170.1	Xeroderma pigmentosum group D protein; ; 	NA	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004003|ATP-dependent DNA helicase activity	NA
PtpAffx.200617.1.S1_at	A	A1TS	POPTR_0001s18300	POPTR_0001s18300 (11)	scaffold_1:15353032-15353627(-) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.200618.1.S1_at	A	A1TS	POPTR_0001s18300	POPTR_0001s18300 (11)	scaffold_1:15355536-15355720(-) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.200618.1.S1_s_at	A	A1TS	POPTR_0001s18300	POPTR_0001s18300 (11)	scaffold_1:15355433-15355671(-) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.200619.1.S1_at	A	A1TS	POPTR_0001s18310	POPTR_0001s18310 (11)	scaffold_1:15366105-15367578(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200620.1.S1_at	A	A1TS	POPTR_0001s18360	POPTR_0001s18360 (9)	scaffold_1:15406019-15406914(+) (11)	NA	NA	NA	AT1G15240.2	"Phox-associated domain;Phox-like;Sorting nexin, C-terminal "	LOC_Os05g50660.1	"PX domain containing protein, putative, expressed"	Medtr4g009210.1	Phox-like; PX-associated; 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.200620.1.S1_x_at	A	A1TS	POPTR_0001s18360	POPTR_0001s18360 (10)	scaffold_1:15406019-15406914(+) (11)	NA	NA	NA	AT1G15240.2	"Phox-associated domain;Phox-like;Sorting nexin, C-terminal "	LOC_Os05g50660.1	"PX domain containing protein, putative, expressed"	Medtr4g009210.1	Phox-like; PX-associated; 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.200621.1.S1_at	A	A1TS	POPTR_0001s18390	POPTR_0001s18390 (11)	scaffold_1:15441545-15442330(+) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.200622.1.S1_at	A	A1TS	POPTR_0001s18410	POPTR_0001s18410 (11)	scaffold_1:15469780-15471760(-) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os06g06780.1	"harpin-induced protein, putative, expressed"	Medtr2g122860.1	Harpin-induced 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200622.1.S1_x_at	A	A1TS	POPTR_0001s18410	POPTR_0001s18410 (11)	scaffold_1:15469780-15471760(-) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os06g06780.1	"harpin-induced protein, putative, expressed"	Medtr2g122860.1	Harpin-induced 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200624.1.S1_at	A	A1TS	POPTR_0001s18430	POPTR_0001s18430 (11)	scaffold_1:15507491-15508138(+) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT1G79860.1	RHO guanyl-nucleotide exchange factor 12 	LOC_Os02g17240.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr2g122820.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.200626.1.S1_at	A	A1TS	POPTR_0001s18470	POPTR_0001s18470 (11)	scaffold_1:15519177-15519801(-) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.200626.1.S1_s_at	A	A1TS	POPTR_0001s18470	POPTR_0001s18470 (11)	scaffold_1:15519321-15519780(-) (11)	POPTR_0003s05100 (6)	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.200626.1.S1_x_at	A	A1TS	POPTR_0001s18470	POPTR_0001s18470 (11)	scaffold_1:15519096-15519852(-) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.200630.1.S1_at	A	A1MS	POPTR_0001s18530	POPTR_0001s18530 (11)	scaffold_1:15587135-15587173(+) (11)//scaffold_3:1784725-1784761(+) (9)	NA	NA	NA	AT2G35040.1	AICARFT/IMPCHase bienzyme family protein 	LOC_Os08g10570.1	"bifunctional purine biosynthesis protein purH, putative, expressed"	Medtr5g103430.1	AICARFT/IMPCHase bienzyme; MGS-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200630.1.S1_x_at	A	A1MS	POPTR_0001s18530	POPTR_0001s18530 (11)	scaffold_1:15587114-15587186(+) (11)	NA	NA	NA	AT2G35040.1	AICARFT/IMPCHase bienzyme family protein 	LOC_Os08g10570.1	"bifunctional purine biosynthesis protein purH, putative, expressed"	Medtr5g103430.1	AICARFT/IMPCHase bienzyme; MGS-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200631.1.S1_at	A	A1TS	POPTR_0001s18550	POPTR_0001s18550 (11)	scaffold_1:15594850-15596106(-) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT2G20110.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os01g55580.2	"tesmin/TSO1-like CXC domain containing protein, expressed"	AC225507_24.1	"Tesmin/TSO1-like, CXC AC225507.11 107125-103243 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200632.1.S1_at	A	A1TS	POPTR_0001s18560	POPTR_0001s18560 (11)	scaffold_1:15609317-15611465(+) (11)	POPTR_0003s05060 (7)	Q0WVL7	Golgin candidate 5	AT1G79830.3	golgin candidate 5 	LOC_Os05g48620.1	"tRNA-binding arm, putative, expressed"	Medtr2g122720.1	"tRNA-binding arm; t-snare, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200633.1.S1_at	A	A1MS	POPTR_0001s18570	POPTR_0001s18570 (10)	scaffold_1:15619722-15620383(+) (10)	NA	Q0WVL7	Golgin candidate 5	AT1G79830.3	golgin candidate 5 	LOC_Os05g48620.1	"tRNA-binding arm, putative, expressed"	Medtr2g122720.1	"tRNA-binding arm; t-snare, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200634.1.S1_at	A	A1TS	POPTR_0001s18580	POPTR_0001s18580 (11)	scaffold_1:15622104-15622567(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G02340.1	RING/U-box superfamily protein 	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g100800.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200635.1.S1_at	A	A1TS	POPTR_0001s18670	POPTR_0001s18670 (11)	scaffold_1:15752103-15753002(-) (11)	NA	Q9CA86	Peroxisome assembly protein 2	AT1G79810.1	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g19480.1	"peroxisome assembly protein, putative, expressed"	Medtr8g015150.1	"Zinc finger, RING-type; Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
PtpAffx.200638.1.S1_at	A	A1TS	POPTR_0001s18720	POPTR_0001s18720 (11)	scaffold_1:15858617-15860322(+) (11)	NA	NA	NA	AT3G16230.3	Predicted eukaryotic LigT 	LOC_Os01g13100.1	"KH domain containing protein, putative, expressed"	Medtr2g122410.1	Appr>p cyclic nucleotide phosphodiesterase 	NA	GO:0003723|RNA binding	NA
PtpAffx.200639.1.S1_at	A	A1TS	POPTR_0001s18750	POPTR_0001s18750 (10)	scaffold_1:15892327-15893309(+) (11)	NA	Q8HY87	Zinc phosphodiesterase ELAC protein 2	AT3G16260.1	tRNAse Z4 	LOC_Os01g13150.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr2g122460.1	"Hydrolase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200640.1.S1_s_at	A	A1TS	POPTR_0001s18760	POPTR_0001s18760 (11)	scaffold_1:15901010-15902284(+) (11)	NA	Q9C5H4	VHS domain-containing protein At3g16270	AT3G16270.1	ENTH/VHS family protein 	LOC_Os01g13160.1	expressed protein	Medtr8g015210.1	VHS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200641.1.S1_at	A	A1TS	POPTR_0001s18770	POPTR_0001s18770 (9)	scaffold_1:15910322-15911055(-) (9)	NA	NA	NA	AT5G06220.2	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200642.1.S1_at	A	A1TS	POPTR_0001s18790	POPTR_0001s18790 (11)	scaffold_1:15923848-15924963(-) (11)	NA	NA	NA	AT1G52155.1	unknown protein; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g48570.1	expressed protein	Medtr8g015300.1	"This gene is cut off., putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200643.1.S1_at	A	A1TS	POPTR_0001s18810	POPTR_0001s18810 (11)	scaffold_1:15993702-15994429(-) (11)	NA	Q9ZU96	Ankyrin repeat-containing protein At2g01680	AT1G10340.2	Ankyrin repeat family protein 	LOC_Os08g42960.2	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g122370.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200644.1.S1_at	A	A1TS	POPTR_0001s18830	POPTR_0001s18830 (11)	scaffold_1:16009945-16010163(-) (11)	NA	Q69P51	Cellulose synthase A catalytic subunit 9 [UDP-forming]	AT4G32410.1	cellulose synthase 1 	LOC_Os09g25490.1	"CESA9 - cellulose synthase, expressed"	Medtr8g145000.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200647.1.S1_at	A	A1TS	POPTR_0001s18890	POPTR_0001s18890 (11)	scaffold_1:16066653-16067479(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g015410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200648.1.S1_at	A	A1MS	POPTR_0001s18900	POPTR_0001s18900 (11)	scaffold_1:16078637-16079168(-) (11)	NA	O82632	GATA transcription factor 9	AT4G32890.1	GATA transcription factor 9 	LOC_Os05g44400.1	"GATA zinc finger domain containing protein, expressed"	Medtr8g015430.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.200649.1.S1_at	A	A1TS	POPTR_0001s18920	POPTR_0001s18920 (11)	scaffold_1:16114273-16114378(+) (11)	NA	NA	NA	AT1G79770.1	Protein of unknown function (DUF1677) 	LOC_Os01g10260.1	expressed protein	Medtr2g122270.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200649.1.S1_x_at	A	A1TS	POPTR_0001s18920	POPTR_0001s18920 (11)	scaffold_1:16113989-16114378(+) (11)	NA	NA	NA	AT1G79770.1	Protein of unknown function (DUF1677) 	LOC_Os01g10260.1	expressed protein	Medtr2g122270.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200650.1.S1_at	A	A1TS	POPTR_0001s19020	POPTR_0001s19020 (11)	scaffold_1:16262072-16263861(-) (11)	NA	NA	NA	AT1G79760.1	downstream target of AGL15-4 	LOC_Os01g54090.1	expressed protein	Medtr8g015870.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200651.1.S1_at	A	A1TS	POPTR_0001s19070	POPTR_0001s19070 (11)	scaffold_1:16367624-16367668(+) (11)	NA	Q869R9	Myb-like protein J	AT3G16350.1	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200652.1.S1_at	A	A1TS	POPTR_0001s19080	POPTR_0001s19080 (11)	scaffold_1:16416138-16416982(+) (11)	NA	Q9LU15	Histidine-containing phosphotransfer protein 4	AT3G16360.2	HPT phosphotransmitter 4 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g122150.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.200653.1.S1_s_at	A	A1TS	POPTR_0001s19090	POPTR_0001s19090 (11)	scaffold_1:16456757-16457953(+) (11)	NA	Q4U0S5	RNA polymerase II-associated factor 1 homolog	AT1G79730.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os08g06070.1	"ELF7, putative, expressed"	Medtr8g015960.1	"RNA polymerase II associated, Paf1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200654.1.S1_at	A	A1TS	POPTR_0001s19110	POPTR_0001s19110 (11)	scaffold_1:16475829-16475955(-) (11)	NA	C0LGT5	Probable LRR receptor-like serine/threonine-protein kinase At5g16900	AT1G51940.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os01g53840.1	"protein kinase family protein, putative, expressed"	Medtr8g016010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200655.1.S1_at	A	A1TS	POPTR_0001s19130	POPTR_0001s19130 (11)	scaffold_1:16553302-16553347(-) (11)	NA	Q9SEK2	Hexokinase-1	AT4G29130.1	hexokinase 1 	LOC_Os05g45590.1	"hexokinase, putative, expressed"	Medtr8g016060.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.200655.1.S1_s_at	A	A1TS	POPTR_0001s19130	POPTR_0001s19130 (11)	scaffold_1:16553334-16553848(-) (11)	NA	Q9SEK2	Hexokinase-1	AT4G29130.1	hexokinase 1 	LOC_Os05g45590.1	"hexokinase, putative, expressed"	Medtr8g016060.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.200656.1.S1_at	A	A1TS	POPTR_0001s19140	POPTR_0001s19140 (11)	scaffold_1:16563482-16564001(-) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G16490.1	IQ-domain 26 	LOC_Os01g09470.1	"IQ calmodulin-binding motif family protein, expressed"	Medtr8g016090.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200657.1.S1_at	A	A1TS	POPTR_0001s19140	POPTR_0001s19140 (11)	scaffold_1:16564164-16565494(-) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G16490.1	IQ-domain 26 	LOC_Os01g09470.1	"IQ calmodulin-binding motif family protein, expressed"	Medtr8g016090.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200658.1.S1_at	A	A1TS	POPTR_0001s19150	POPTR_0001s19150 (10)	scaffold_1:16579566-16580105(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200659.1.S1_at	A	A1TS	POPTR_0001s19210	POPTR_0001s19210 (11)	scaffold_1:16699262-16699814(+) (11)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT1G52080.1	actin binding protein family 	LOC_Os05g09380.3	"AR791, putative, expressed"	Medtr2g121920.1	AR791; actin binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20066.1.S1_at	A	A1TS	POPTR_0015s08380	POPTR_0015s08380 (11)	scaffold_15:9630958-9631024(-) (11)	NA	Q27GI3	Nucleobase-ascorbate transporter 6	AT5G62890.3	Xanthine/uracil permease family protein 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g125300.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.20066.1.S1_s_at	A	A1TS	POPTR_0015s08380	POPTR_0015s08380 (11)	scaffold_15:9630851-9631256(-) (11)	NA	Q27GI3	Nucleobase-ascorbate transporter 6	AT5G62890.3	Xanthine/uracil permease family protein 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g125300.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.20066.2.S1_a_at	A	A2TS	POPTR_0012s07890	POPTR_0012s07890 (11)//POPTR_0015s08380 (11)	scaffold_12:8853348-8854238(-) (11)//scaffold_15:9635543-9636460(-) (11)	NA	Q27GI3	Nucleobase-ascorbate transporter 6	AT5G62890.4	Xanthine/uracil permease family protein 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g125300.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.200660.1.S1_at	A	A1TS	POPTR_0001s19230	POPTR_0001s19230 (11)	scaffold_1:16720299-16721743(-) (11)	NA	P11940	Polyadenylate-binding protein 1	AT3G16380.1	poly(A) binding protein 6 	LOC_Os08g22354.2	"polyadenylate-binding protein, putative, expressed"	Medtr7g124520.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.200662.1.S1_at	A	A1TS	POPTR_0001s19250	POPTR_0001s19250 (10)	scaffold_1:16795301-16795876(-) (11)	NA	Q8S3D2	Transcription factor bHLH87	AT3G21330.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g51140.2	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g121770.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.200663.1.S1_at	A	A1TS	POPTR_0001s19280	POPTR_0001s19280 (11)	scaffold_1:16895192-16895640(-) (11)	NA	P29602	Cucumber peeling cupredoxin	AT5G20230.1	blue-copper-binding protein 	LOC_Os08g37660.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.200664.1.S1_at	A	A1TS	POPTR_0001s19290	POPTR_0001s19290 (11)	scaffold_1:16910556-16911132(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT3G15800.1	Glycosyl hydrolase superfamily protein 	LOC_Os02g10660.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr4g005540.1	"Glycoside hydrolase, family 17; Methyl-CpG binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200665.1.S1_at	A	A1TS	POPTR_0001s19300	POPTR_0001s19300 (11)	scaffold_1:16913474-16913853(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200666.1.S1_at	A	A1TS	POPTR_0001s19320	POPTR_0001s19320 (11)	scaffold_1:16939554-16940162(-) (11)	NA	Q9SSQ8	"26.5 kDa heat shock protein, mitochondrial"	AT1G52560.1	HSP20-like chaperones superfamily protein 	LOC_Os02g10710.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr4g005460.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200667.1.S1_x_at	A	A1TS	POPTR_0001s19360	POPTR_0001s19360 (11)	scaffold_1:16997379-16997978(-) (11)	POPTR_0003s02730 (6)	Q41142	Phospholipase D alpha 1	AT1G52570.1	phospholipase D alpha 2 	LOC_Os01g07760.2	"phospholipase D, putative, expressed"	Medtr2g126370.1	"C2; Peptidase, cysteine peptidase active site "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.200668.1.S1_at	A	A1TS	POPTR_0001s19380	POPTR_0001s19380 (11)	scaffold_1:17022308-17023132(+) (11)	NA	Q69XJ0	SPX domain-containing protein 1	AT5G20150.1	SPX  domain gene 1 	LOC_Os06g40120.1	"SPX domain containing protein, putative, expressed"	Medtr1g013760.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200669.1.S1_at	A	A1TS	POPTR_0001s19390	POPTR_0001s19390 (11)	scaffold_1:17030127-17031422(-) (11)	NA	Q91W34	UPF0420 protein C16orf58 homolog	AT3G45890.1	"Protein of unknown function, DUF647 "	LOC_Os04g22360.1	"DUF647 domain containing protein, putative, expressed"	Medtr5g025140.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200670.1.S1_at	A	A1TS	POPTR_0001s19430	POPTR_0001s19430 (11)	scaffold_1:17110641-17112364(+) (11)	NA	P43793	NADP-specific glutamate dehydrogenase	AT1G51720.1	Amino acid dehydrogenase family protein 	LOC_Os01g37760.1	"glutamate dehydrogenase protein, putative, expressed"	NA	NA	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.200671.1.S1_at	A	A1TS	POPTR_0001s19480	POPTR_0001s19480 (10)	scaffold_1:17158849-17159476(+) (10)	NA	P59278	Uncharacterized protein At1g51745	AT3G21295.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os01g37790.1	expressed protein	Medtr4g106850.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200673.1.S1_at	A	A1TS	POPTR_0681s00210	POPTR_0681s00210 (10)	scaffold_681:8302-9088(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200675.1.S1_at	A	A1TS	POPTR_0001s22200	POPTR_0001s22200 (11)	scaffold_1:20847446-20849372(-) (11)	NA	Q9C585	Ubiquitin carboxyl-terminal hydrolase 8	AT5G22030.1	ubiquitin-specific protease 8 	LOC_Os07g06610.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.200676.1.S1_at	A	A1TS	POPTR_0001s22210	POPTR_0001s22210 (11)	scaffold_1:20854815-20858084(-) (11)	NA	Q9C585	Ubiquitin carboxyl-terminal hydrolase 8	AT5G22030.1	ubiquitin-specific protease 8 	LOC_Os12g42600.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr2g104710.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200677.1.S1_at	A	A1TS	POPTR_0001s22220	POPTR_0001s22220 (11)	scaffold_1:20864930-20865436(+) (11)	NA	NA	NA	AT5G55690.1	MADS-box transcription factor family protein 	LOC_Os01g67890.1	OsMADS96 - MADS-box family gene with M-beta type-box	Medtr6g005370.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.200678.1.S1_at	A	A1TS	POPTR_0001s22260	POPTR_0001s22260 (11)	scaffold_1:20885828-20886934(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G22190.2	IQ-domain 5 	LOC_Os03g44610.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g067020.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200679.1.S1_at	A	A1TS	POPTR_0001s22280	POPTR_0001s22280 (11)	scaffold_1:20897891-20899050(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200680.1.S1_at	A	A1TS	POPTR_0001s22310	POPTR_0001s22310 (11)	scaffold_1:20922608-20923365(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200683.1.S1_at	A	A1TS	POPTR_0001s22350	POPTR_0001s22350 (11)	scaffold_1:20971185-20971652(-) (11)	NA	NA	NA	AT5G22090.2	Protein of unknown function (DUF3049) 	LOC_Os03g49830.1	expressed protein	Medtr4g067120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200684.1.S1_at	A	A1TS	POPTR_0001s22370	POPTR_0001s22370 (11)	scaffold_1:21023216-21023790(+) (11)	NA	Q84TG3	E3 ubiquitin-protein ligase PUB23	AT2G35930.1	plant U-box 23 	LOC_Os02g33590.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.200685.1.S1_at	A	A1TS	POPTR_0001s22380	POPTR_0001s22380 (11)	scaffold_1:21034288-21035210(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200686.1.S1_at	A	A1TS	POPTR_0001s22390	POPTR_0001s22390 (10)	scaffold_1:21051699-21052270(-) (11)	NA	Q9SF15	E3 ubiquitin-protein ligase PUB24	AT3G11840.1	plant U-box 24 	LOC_Os04g58920.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.200688.1.S1_at	A	A1TS	POPTR_0001s22450	POPTR_0001s22450 (11)	scaffold_1:21202182-21203051(+) (11)	NA	Q7XJU0	Uncharacterized basic helix-loop-helix protein At1g64625	AT2G27230.2	transcription factor-related 	LOC_Os01g64560.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200692.1.S1_at	A	A1TS	POPTR_0001s22520	POPTR_0001s22520 (11)	scaffold_1:21421396-21421928(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200694.1.S1_at	A	A1TS	POPTR_0001s22540	POPTR_0001s22540 (11)	scaffold_1:21440298-21441447(-) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT1G66150.1	transmembrane kinase 1 	LOC_Os04g58910.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr2g105170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.200695.1.S1_at	A	A1TS	POPTR_0001s22560	POPTR_0001s22560 (11)	scaffold_1:21455448-21456692(-) (11)	NA	Q54NS8	Apoptosis-inducing factor homolog B	AT3G44190.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os02g05680.1	"apoptosis-inducing factor 2, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.200696.1.S1_at	A	A1TS	POPTR_0001s22570	POPTR_0001s22570 (11)	scaffold_1:21478297-21481099(+) (11)	NA	Q0WPH8	Serine/threonine-protein kinase Nek5	AT3G44200.1	"NIMA (never in mitosis, gene A)-related 6 "	LOC_Os01g64490.1	"protein kinase domain containing protein, expressed"	Medtr2g105340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200697.1.S1_at	A	A1TS	POPTR_0001s22580	POPTR_0001s22580 (11)	scaffold_1:21485417-21485937(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200698.1.S1_at	A	A1TS	POPTR_0001s22590	POPTR_0001s22590 (11)	scaffold_1:21498356-21498918(+) (11)	NA	NA	NA	AT2G27260.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os11g05870.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g105350.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.200699.1.S1_s_at	A	A2TS	POPTR_0001s22610	POPTR_0001s22610 (11)//POPTR_0352s00210 (10)	scaffold_1:21511752-21512320(+) (11)//scaffold_352:18326-18893(-) (10)	NA	Q9FMR0	Peroxidase 60	AT5G22410.1	root hair specific 18 	LOC_Os10g41720.1	"peroxidase precursor, putative, expressed"	Medtr7g103630.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.200701.1.S1_s_at	A	A1TS	POPTR_0001s22630	POPTR_0001s22630 (11)	scaffold_1:21527172-21527570(+) (11)	NA	Q9FMR3	NAC domain-containing protein 90	AT3G44350.2	NAC domain containing protein 61 	LOC_Os05g37080.1	"No apical meristem protein, putative, expressed"	Medtr2g107600.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.200705.1.S1_at	A	A1TS	POPTR_0001s22690	POPTR_0001s22690 (11)	scaffold_1:21578214-21580798(+) (11)	NA	NA	NA	AT2G25570.3	binding 	LOC_Os02g10820.1	"Sel1 repeat domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200706.1.S1_at	A	A1TS	POPTR_0001s22720	POPTR_0001s22720 (11)	scaffold_1:21604745-21605254(-) (11)	NA	Q39131	Lamin-like protein	AT2G27035.1	early nodulin-like protein 20 	LOC_Os07g02200.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr3g162720.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.200708.1.S1_at	A	A1TS	POPTR_0001s22740	POPTR_0001s22740 (10)	scaffold_1:21626969-21627444(-) (10)	NA	Q6ZQ58	La-related protein 1	AT5G21160.2	LA RNA-binding protein 	LOC_Os01g16110.2	"la domain containing protein, putative, expressed"	Medtr5g095250.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200709.1.S1_at	A	A1TS	POPTR_0001s22760	POPTR_0001s22760 (11)	scaffold_1:21650443-21650771(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200710.1.S1_at	A	A1TS	POPTR_0001s22770	POPTR_0001s22770 (11)	scaffold_1:21655345-21656085(+) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT1G77450.1	NAC domain containing protein 32 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr1g065520.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.200710.1.S1_s_at	A	A1TS	POPTR_0001s22770	POPTR_0001s22770 (11)	scaffold_1:21655404-21655988(+) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT1G77450.1	NAC domain containing protein 32 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr1g065520.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.200711.1.S1_at	A	A1TS	POPTR_0001s22820	POPTR_0001s22820 (11)	scaffold_1:21699245-21700343(-) (11)	POPTR_0002s22870 (7)	A7RWD2	Probable cytosolic iron-sulfur protein assembly protein	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200711.1.S1_x_at	A	A1TS	POPTR_0001s22820	POPTR_0001s22820 (11)	scaffold_1:21699236-21700613(-) (11)	NA	A7RWD2	Probable cytosolic iron-sulfur protein assembly protein	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200712.1.S1_at	A	A1TS	POPTR_0001s26280	POPTR_0001s26280 (11)	scaffold_1:25324051-25324702(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g16880.1	expressed protein	Medtr4g104360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200713.1.S1_at	A	A1TS	POPTR_0001s26250	POPTR_0001s26250 (11)	scaffold_1:25304402-25305513(-) (11)	NA	Q10M00	Zinc finger CCCH domain-containing protein 22	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os03g21140.1	"RNA-binding zinc finger protein, putative, expressed"	Medtr5g008940.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200714.1.S1_at	A	A1TS	POPTR_0001s26240	POPTR_0001s26240 (11)	scaffold_1:25291832-25292748(-) (11)	NA	Q94CJ8	Zinc finger CCCH domain-containing protein 55	AT3G21100.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g21140.1	"RNA-binding zinc finger protein, putative, expressed"	Medtr5g008940.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200715.1.S1_at	A	A1TS	POPTR_0001s26220	POPTR_0001s26220 (11)	scaffold_1:25283026-25284096(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200716.1.S1_at	A	A1MS	POPTR_0001s26200	POPTR_0001s26200 (11)	scaffold_1:25273113-25273644(-) (11)	NA	Q5R8D8	DnaJ homolog subfamily C member 7	AT5G12430.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.200717.1.S1_at	A	A1MS	POPTR_0001s26200	POPTR_0001s26200 (9)	scaffold_1:25272251-25272981(-) (9)	NA	Q5R8D8	DnaJ homolog subfamily C member 7	AT5G12430.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.200718.1.S1_at	A	A1TS	POPTR_0001s26200	POPTR_0001s26200 (11)	scaffold_1:25269935-25270083(-) (11)	NA	Q5R8D8	DnaJ homolog subfamily C member 7	AT5G12430.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.200720.1.S1_at	A	A1TS	POPTR_0001s26190	POPTR_0001s26190 (11)	scaffold_1:25247229-25247797(-) (11)	NA	Q9LPS1	Hexokinase-3	AT1G50460.1	hexokinase-like 1 	LOC_Os01g71320.1	"hexokinase, putative, expressed"	Medtr5g009020.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.200722.1.S1_at	A	A1TS	POPTR_0001s26130	POPTR_0001s26130 (11)	scaffold_1:25217432-25217975(+) (11)	NA	Q9W0T1	Nucleosome-remodeling factor subunit NURF301	AT5G12400.1	DNA binding;zinc ion binding;DNA binding 	LOC_Os07g46690.1	"PHD-finger family protein, expressed"	Medtr4g103750.1	"Immunoglobulin/major histocompatibility complex; DDT; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200723.1.S1_at	A	A1TS	POPTR_0001s26130	POPTR_0001s26130 (11)	scaffold_1:25213531-25213780(+) (11)	NA	Q9W0T1	Nucleosome-remodeling factor subunit NURF301	AT5G12400.1	DNA binding;zinc ion binding;DNA binding 	LOC_Os07g46690.1	"PHD-finger family protein, expressed"	Medtr4g103750.1	"Immunoglobulin/major histocompatibility complex; DDT; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200724.1.S1_at	A	A1TS	POPTR_0001s26110	POPTR_0001s26110 (11)	scaffold_1:25194499-25196424(+) (11)	NA	Q9SIU2	Nuclear cap-binding protein subunit 1	AT2G13540.1	ARM repeat superfamily protein 	LOC_Os03g22570.1	"MIF4G domain containing protein, putative, expressed"	Medtr7g096860.1	"Initiation factor eIF-4 gamma, middle; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200725.1.S1_s_at	A	A1TS	POPTR_0001s26090	POPTR_0001s26090 (11)	scaffold_1:25184480-25186007(+) (11)	NA	C0ZIY1	Pseudouridine-5'-phosphate glycosidase	AT1G50510.1	indigoidine synthase A family protein 	LOC_Os08g39420.2	"uncharacterized protein yeiN, putative, expressed"	Medtr4g032300.1	Indigoidine synthase A like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200726.1.S1_at	A	A1TS	POPTR_0001s26030	POPTR_0001s26030 (11)	scaffold_1:25123842-25124994(-) (11)	NA	O14647	Chromodomain-helicase-DNA-binding protein 2	AT2G13370.1	chromatin remodeling 5 	LOC_Os07g46590.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g097130.1	"SNF2-related; Chromo; Helicase, C-terminal; Homeodomain-like; "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.200726.1.S1_s_at	A	A2TS	POPTR_0001s26030	POPTR_0001s26030 (11)//POPTR_0009s05250 (11)	scaffold_1:25123760-25125052(-) (11)//scaffold_9:5381779-5382953(-) (11)	NA	O14647	Chromodomain-helicase-DNA-binding protein 2	AT2G13370.1	chromatin remodeling 5 	LOC_Os07g46590.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g097130.1	"SNF2-related; Chromo; Helicase, C-terminal; Homeodomain-like; "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.200727.1.S1_at	A	A1TS	POPTR_0001s26030	POPTR_0001s26030 (10)	scaffold_1:25121976-25123277(-) (10)	NA	O14647	Chromodomain-helicase-DNA-binding protein 2	AT2G13370.1	chromatin remodeling 5 	LOC_Os07g46590.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g097130.1	"SNF2-related; Chromo; Helicase, C-terminal; Homeodomain-like; "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.200727.1.S1_s_at	A	A1TS	POPTR_0001s26030	POPTR_0001s26030 (11)	scaffold_1:25120997-25122171(-) (11)	NA	O14647	Chromodomain-helicase-DNA-binding protein 2	AT2G13370.1	chromatin remodeling 5 	LOC_Os07g46590.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g097130.1	"SNF2-related; Chromo; Helicase, C-terminal; Homeodomain-like; "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.200728.1.S1_at	A	A1TS	POPTR_0001s26010	POPTR_0001s26010 (11)	scaffold_1:25106948-25109173(-) (11)	NA	O74918	Exosome complex component rrp45	AT3G60500.3	3'-5'-exoribonuclease family protein 	LOC_Os02g34570.2	"exosome complex exonuclease, putative, expressed"	Medtr2g024450.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.200729.1.S1_at	A	A1TS	POPTR_0001s26000	POPTR_0001s26000 (11)	scaffold_1:25097237-25099353(-) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT1G34470.1	Protein of unknown function (DUF803) 	LOC_Os05g43790.1	"DUF803 domain containing, putative, expressed"	Medtr5g097050.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.200730.1.S1_s_at	A	A2TS	POPTR_0001s25990	POPTR_0001s25990 (11)//POPTR_0009s05170 (11)	scaffold_1:25090736-25090806(+) (11)//scaffold_9:5327307-5327377(+) (11)	NA	Q9STZ2	SelT-like protein	AT3G47300.1	SELT-like protein precursor 	LOC_Os01g61580.1	"selT-like protein precursor, putative, expressed"	Medtr4g013030.1	SelT/selW/selH selenoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200731.1.S1_at	A	A1TS	POPTR_0001s25970	POPTR_0001s25970 (11)	scaffold_1:25060230-25061005(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200732.1.S1_at	A	A1TS	POPTR_0001s25960	POPTR_0001s25960 (11)	scaffold_1:25051497-25051823(+) (11)	NA	Q9LUZ4	Zinc finger CCCH domain-containing protein 66	AT5G58620.1	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g079420.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200733.1.S1_at	A	A1TS	POPTR_0001s25940	POPTR_0001s25940 (11)	scaffold_1:25009899-25010334(-) (11)	NA	Q9LY50	Putative serine/threonine-protein kinase-like protein CCR3	AT3G55950.1	CRINKLY4 related 3 	LOC_Os05g03620.1	"TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr3g093940.1	Protein kinase; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200734.1.S1_at	A	A1TS	POPTR_0001s25930	POPTR_0001s25930 (11)	scaffold_1:25005274-25006131(+) (11)	NA	Q39033	Phosphoinositide phospholipase C 2	AT3G08510.2	phospholipase C 2 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr3g093840.1	C2; EF-Hand type; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.200735.1.S1_at	A	A1TS	POPTR_0001s25920	POPTR_0001s25920 (11)	scaffold_1:24997404-24999414(+) (11)	NA	Q8GV43	Phosphoinositide phospholipase C 6	AT2G40116.1	Phosphoinositide-specific phospholipase C family protein 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr5g090020.1	C2; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200736.1.S1_at	A	A1TS	POPTR_0001s25890	POPTR_0001s25890 (11)	scaffold_1:24971600-24972778(+) (11)	NA	NA	NA	AT5G01450.1	RING/U-box superfamily protein 	LOC_Os05g44550.1	"zinc finger family protein, putative"	Medtr1g023680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200737.1.S1_at	A	A1TS	POPTR_0001s25870	POPTR_0001s25870 (11)	scaffold_1:24944002-24944296(+) (11)	NA	NA	NA	AT2G29950.1	ELF4-like 1 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr3g093640.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200738.1.S1_at	A	A1TS	POPTR_0001s25860	POPTR_0001s25860 (11)	scaffold_1:24936775-24937329(+) (11)	NA	NA	NA	AT5G58730.1	pfkB-like carbohydrate kinase family protein 	LOC_Os03g52760.1	"kinase, pfkB family, putative, expressed"	Medtr5g078830.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200739.1.S1_at	A	A1TS	POPTR_0001s25850	POPTR_0001s25850 (11)	scaffold_1:24929744-24929870(-) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os09g02830.1	OsMADS78 - MADS-box family gene with M-alpha type-box	Medtr1g042290.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.200741.1.S1_at	A	A1TS	POPTR_0001s25820	POPTR_0001s25820 (10)	scaffold_1:24889299-24890296(+) (10)	NA	Q7PC88	ABC transporter G family member 31	AT2G29940.1	pleiotropic drug resistance 3 	LOC_Os01g42410.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr5g078790.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.200742.1.S1_at	A	A1TS	POPTR_0001s25810	POPTR_0001s25810 (11)	scaffold_1:24869612-24869859(+) (11)	NA	Q6NQ88	Protein DAMAGED DNA-BINDING 2	AT5G58760.1	damaged DNA binding 2 	LOC_Os01g04870.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g078770.1	WD40-like 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200743.1.S1_at	A	A1TS	POPTR_0001s25770	POPTR_0001s25770 (10)	scaffold_1:24806203-24806723(+) (11)	NA	Q9FVN0	Ammonium transporter 1 member 3	AT4G13510.1	ammonium transporter 1;1 	LOC_Os02g40730.1	"ammonium transporter protein, putative, expressed"	Medtr1g065600.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.200744.1.S1_at	A	A1MS	POPTR_0625s00200	POPTR_0625s00200 (10)	scaffold_625:6030-10662(-) (11)	NA	NA	NA	AT5G01260.1	Carbohydrate-binding-like fold 	LOC_Os05g37450.1	"starch binding domain containing protein, putative, expressed"	Medtr4g012900.1	"Glycoside hydrolase, starch-binding; "	GO:0005975|carbohydrate metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.200745.1.S1_at	A	A1MS	POPTR_0001s25740	POPTR_0001s25740 (10)	scaffold_1:24794075-24794972(+) (10)	NA	P32069	"Anthranilate synthase component I-2, chloroplastic"	AT2G29690.1	anthranilate synthase 2 	LOC_Os03g61120.1	"anthranilate synthase component I-1, chloroplast precursor, putative, expressed"	Medtr1g143790.1	Anthranilate synthase component I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200746.1.S1_at	A	A1TS	POPTR_0001s25710	POPTR_0001s25710 (11)	scaffold_1:24759071-24760595(-) (11)	NA	Q9S7L2	Transcription factor MYB98	AT5G58850.1	myb domain protein 119 	LOC_Os06g06740.1	"MYB family transcription factor, putative, expressed"	Medtr5g078470.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200747.1.S1_x_at	A	A1TS	POPTR_0001s18480	POPTR_0001s18480 (9)	scaffold_1:15544073-15544298(+) (9)//scaffold_1:24751919-24752144(+) (9)//scaffold_11:15809276-15809501(-) (9)//scaffold_16:8894713-8894938(+) (9)//scaffold_19:6342281-6342506(+) (9)//scaffold_4:4739414-4739639(+) (9)//scaffold_4:17282976-17283201(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200748.1.S1_at	A	A1TS	POPTR_0001s25610	POPTR_0001s25610 (11)	scaffold_1:24677146-24678060(-) (11)	NA	NA	NA	AT5G58880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g59670.1	expressed protein	Medtr7g104360.2	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200750.1.S1_at	A	A1TS	POPTR_0001s25570	POPTR_0001s25570 (11)	scaffold_1:24627381-24627978(-) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.200751.1.S1_at	A	A1TS	POPTR_0001s25550	POPTR_0001s25550 (11)	scaffold_1:24622687-24623107(+) (11)	NA	Q9SS80	"UPF0503 protein At3g09070, chloroplastic"	AT5G58930.1	Protein of unknown function (DUF740) 	LOC_Os01g63310.1	"DUF740 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200753.1.S1_at	A	A1TS	POPTR_0001s25530	POPTR_0001s25530 (9)	scaffold_1:24609823-24611118(-) (9)	NA	Q66GI9	"Probable anion transporter 4, chloroplastic"	AT3G46980.3	phosphate transporter 4;3 	LOC_Os01g63290.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200755.1.S1_s_at	A	A1TS	POPTR_0001s25460	POPTR_0001s25460 (11)	scaffold_1:24573808-24574835(+) (11)	NA	Q304B9	Neutral ceramidase	AT1G07380.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200756.1.S1_s_at	A	A1TS	POPTR_0001s25440	POPTR_0001s25440 (11)	scaffold_1:24556834-24557098(+) (11)	NA	NA	NA	AT5G01120.1	Protein of unknown function (DUF674) 	LOC_Os04g50800.1	expressed protein	Medtr2g085240.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200760.1.S1_at	A	A1TS	POPTR_0001s25350	POPTR_0001s25350 (11)	scaffold_1:24505488-24508181(+) (11)	NA	NA	NA	AT3G54020.1	Arabidopsis Inositol phosphorylceramide synthase 1 	LOC_Os01g63060.1	"phosphatidic acid phosphatase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200761.1.S1_at	A	A1TS	POPTR_0001s25330	POPTR_0001s25330 (9)	scaffold_1:24473898-24485237(+) (9)	NA	P46070	Transcription factor IIIB 70 kDa subunit	AT3G09360.1	Cyclin/Brf1-like TBP-binding protein 	LOC_Os05g23940.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g103530.1	Cyclin-like; Brf1-like TBP-binding; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045941|positive regulation of transcription||GO:0006413|translational initiation	GO:0008270|zinc ion binding||GO:0016563|transcription activator activity||GO:0005515|protein binding||GO:0003743|translation initiation factor activity	GO:0005634|nucleus
PtpAffx.200762.1.S1_at	A	A1TS	POPTR_0001s25270	POPTR_0001s25270 (11)	scaffold_1:24438765-24439279(+) (11)	NA	Q6DBM8	Metal tolerance protein B	AT2G29410.1	metal tolerance protein B1 	LOC_Os05g03780.1	"cation efflux family protein, putative, expressed"	Medtr2g041270.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.200764.1.S1_s_at	A	A1TS	POPTR_0001s25230	POPTR_0001s25230 (11)	scaffold_1:24413426-24415287(+) (11)	NA	NA	NA	AT5G59210.2	myosin heavy chain-related 	LOC_Os03g16120.1	"myosin heavy chain-related, putative, expressed"	Medtr2g117320.1	"t-snare, identical "	NA	NA	GO:0016020|membrane
PtpAffx.200765.1.S1_at	A	A1TS	POPTR_0001s25190	POPTR_0001s25190 (11)	scaffold_1:24389418-24389780(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200766.1.S1_at	A	A1TS	POPTR_0001s25170	POPTR_0001s25170 (11)	scaffold_1:24375113-24375319(+) (11)	NA	P50165	Tropinone reductase homolog	AT2G29260.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.200767.1.S1_at	A	A1TS	POPTR_0001s25140	POPTR_0001s25140 (11)	scaffold_1:24351788-24352405(+) (11)	NA	Q5ZMJ9	Serine/arginine repetitive matrix protein 1	AT2G29210.1	splicing factor PWI domain-containing protein 	LOC_Os03g16369.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g084280.1	Splicing factor PWI 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	NA
PtpAffx.200768.1.S1_at	A	A1TS	POPTR_0001s25120	POPTR_0001s25120 (11)	scaffold_1:24340400-24340530(-) (11)	NA	Q9USU9	Transcription initiation factor IIA large subunit	AT1G07470.1	"Transcription factor IIA, alpha/beta subunit "	LOC_Os05g22670.1	"transcription factor IIA large subunit, putative, expressed"	Medtr2g117270.1	"Transcription initiation factor IIA, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005672|transcription factor TFIIA complex
PtpAffx.200769.1.S1_at	A	A1TS	POPTR_0001s25110	POPTR_0001s25110 (11)	scaffold_1:24339105-24339528(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g117260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200770.1.S1_at	A	A1TS	POPTR_0001s25080	POPTR_0001s25080 (11)	scaffold_1:24315303-24315997(+) (11)	NA	NA	NA	AT3G46750.1	unknown protein; Has 2631 Blast hits to 1984 proteins in 271 species: Archae - 6; Bacteria - 163; Metazoa - 1232; Fungi - 253; Plants - 141; Viruses - 8; Other Eukaryotes - 828 (source: NCBI BLink). 	NA	NA	Medtr4g084410.1	"serine/threonine kinase-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200772.1.S1_at	A	A1TS	POPTR_0001s25060	POPTR_0001s25060 (11)	scaffold_1:24310711-24311218(-) (11)	NA	Q9FGR2	Pentatricopeptide repeat-containing protein At5g59600	AT5G59600.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g16450.1	"pentatricopeptide, putative, expressed"	Medtr4g084310.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200773.1.S1_at	A	A1TS	POPTR_0001s25050	POPTR_0001s25050 (10)	scaffold_1:24307375-24308650(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200774.1.S1_at	A	A1TS	POPTR_0001s25040	POPTR_0001s25040 (10)	scaffold_1:24300494-24301131(+) (10)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT3G46640.2	Homeodomain-like superfamily protein 	LOC_Os01g74020.1	"MYB family transcription factor, putative, expressed"	Medtr4g084700.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200777.1.S1_at	A	A2TS	POPTR_0001s25020	POPTR_0001s25020 (11)//POPTR_0009s03980 (9)	scaffold_1:24281122-24281289(+) (11)//scaffold_9:4551904-4552047(+) (9)	NA	Q9ZW06	Pumilio homolog 2	AT2G29190.2	pumilio 2 	LOC_Os01g62650.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr4g084270.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.200778.1.S1_at	A	A1TS	POPTR_0001s25010	POPTR_0001s25010 (11)	scaffold_1:24266941-24267491(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G46620.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200779.1.S1_at	A	A1TA	POPTR_0001s24960	POPTR_0001s24960 (11)	scaffold_1:24223625-24223978(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200780.1.S1_s_at	A	A2TS	POPTR_0001s24940	POPTR_0009s03900 (11)//POPTR_0001s24940 (11)	scaffold_1:24203067-24203188(-) (11)//scaffold_9:4467805-4467926(-) (11)	NA	O81077	Abscisic acid 8'-hydroxylase 2	AT2G29090.2	"cytochrome P450, family 707, subfamily A, polypeptide 2 "	LOC_Os02g47470.1	"cytochrome P450, putative, expressed"	Medtr5g025670.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.200781.1.S1_at	A	A1TS	POPTR_0001s24920	POPTR_0001s24920 (11)	scaffold_1:24191300-24191624(+) (11)	NA	NA	NA	AT5G59500.1	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases 	NA	NA	Medtr8g047820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200782.1.S1_at	A	A1TS	POPTR_0001s24880	POPTR_0001s24880 (11)	scaffold_1:24153098-24153575(+) (11)	NA	O80933	Scarecrow-like protein 9	AT2G37650.1	GRAS family transcription factor 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr2g116970.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200783.1.S1_at	A	A1TS	POPTR_0001s24870	POPTR_0001s24870 (11)	scaffold_1:24144394-24144738(+) (11)	NA	Q9XE58	Scarecrow-like protein 14	AT1G07530.1	SCARECROW-like 14 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200785.1.S1_s_at	A	A1TS	POPTR_0001s24850	POPTR_0001s24850 (11)	scaffold_1:24096081-24096518(+) (11)	NA	Q9XE58	Scarecrow-like protein 14	AT1G07530.1	SCARECROW-like 14 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200787.1.S1_at	A	A1TS	POPTR_0001s24800	POPTR_0001s24800 (11)	scaffold_1:24048223-24049297(-) (11)	NA	Q6GMF8	Rhomboid family member 1	AT2G29050.1	RHOMBOID-like 1 	LOC_Os11g47840.1	"OsRhmbd18 - Putative Rhomboid homologue, expressed"	Medtr2g116690.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.200788.1.S1_at	A	A1TS	POPTR_0001s24770	POPTR_0001s24770 (11)	scaffold_1:24020676-24021472(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200789.1.S1_at	A	A1TS	POPTR_0001s24750	POPTR_0001s24750 (11)	scaffold_1:24001340-24002496(+) (11)	NA	NA	NA	AT1G13790.1	XH/XS domain-containing protein 	LOC_Os01g44230.1	"transcription factor X1, putative, expressed"	Medtr5g087360.1	"Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200790.1.S1_at	A	A1TS	POPTR_0001s24730	POPTR_0001s24730 (11)	scaffold_1:23976781-23977055(-) (11)	NA	Q9LTC0	Probable receptor-like protein kinase At5g47070	AT2G28940.2	Protein kinase superfamily protein 	LOC_Os02g57420.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr1g076510.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200791.1.S1_at	A	A1TS	POPTR_0001s24630	POPTR_0001s24630 (11)	scaffold_1:23904654-23905198(+) (11)	NA	NA	NA	AT5G02390.1	Protein of unknown function (DUF3741) 	LOC_Os12g38260.1	expressed protein	Medtr7g087380.1	"{, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200792.1.S1_at	A	A1TS	POPTR_0001s24620	POPTR_0001s24620 (10)	scaffold_1:23875568-23876900(-) (10)	NA	Q9LQN6	Probable protein phosphatase 2C 4	AT1G07630.1	pol-like 5 	LOC_Os03g60650.1	"protein phosphatase 2C, putative, expressed"	Medtr8g102940.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200793.1.S1_at	A	A1TS	POPTR_0001s24590	POPTR_0001s24590 (10)	scaffold_1:23841605-23841940(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200794.1.S1_at	A	A1TS	POPTR_0001s24540	POPTR_0001s24540 (11)	scaffold_1:23793468-23793823(+) (11)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.1	OBF-binding protein 3 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.200795.1.S1_at	A	A1MS	POPTR_0001s24500	POPTR_0001s24500 (11)	scaffold_1:23763087-23764146(+) (11)	NA	P0CE10	"Putative uncharacterized protein At4g01020, chloroplastic"	AT5G10370.1	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related 	LOC_Os07g42900.1	"helicase domain-containing protein, putative, expressed"	Medtr3g005610.1	"Helicase, C-terminal; Zinc finger, RING-type; Zinc finger, C6HC-type; Zinc finger, C2H2-type; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.200796.1.S1_at	A	A1TS	POPTR_0001s24470	POPTR_0001s24470 (11)	scaffold_1:23746640-23747739(-) (11)	NA	Q6X7K1	WUSCHEL-related homeobox 2	AT5G59340.1	WUSCHEL related homeobox 2 	LOC_Os01g62310.1	"homeobox domain containing protein, expressed"	Medtr4g154980.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.200797.1.S1_at	A	A1TS	POPTR_0001s24420	POPTR_0001s24420 (11)	scaffold_1:23699729-23700323(+) (11)	NA	NA	NA	AT1G07645.1	dessication-induced 1VOC superfamily protein 	LOC_Os03g16940.1	"glyoxalase family protein, putative, expressed"	Medtr4g078800.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200798.1.S1_at	A	A1TS	POPTR_0001s24370	POPTR_0001s24370 (11)	scaffold_1:23666568-23668734(-) (11)	NA	NA	NA	AT2G39570.1	ACT domain-containing protein 	LOC_Os05g02220.3	"ACT domain containing protein, expressed"	Medtr2g114630.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.200799.1.S1_at	A	A1TS	POPTR_0001s24360	POPTR_0001s24360 (11)	scaffold_1:23660552-23661228(-) (11)	NA	NA	NA	AT5G59960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g05830.1	expressed protein	Medtr4g078590.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200800.1.S1_at	A	A1TS	POPTR_0001s24340	POPTR_0001s24340 (11)	scaffold_1:23646707-23647205(-) (11)	NA	Q9FJE6	Putative pentatricopeptide repeat-containing protein At5g59900	AT5G59900.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g06000.1	"PPR repeat containing protein, expressed"	Medtr4g100840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200801.1.S1_at	A	A1TS	POPTR_0001s24280	POPTR_0001s24280 (11)	scaffold_1:23616138-23617317(+) (11)	NA	NA	NA	AT5G59830.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr4g078970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200801.1.S1_x_at	A	A1TS	POPTR_0001s24280	POPTR_0001s24280 (11)	scaffold_1:23616138-23617317(+) (11)	NA	NA	NA	AT5G59830.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr4g078970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200802.1.S1_at	A	A1TS	POPTR_0001s24240	POPTR_0001s24240 (11)	scaffold_1:23588573-23590169(+) (11)	NA	NA	NA	AT5G59790.1	Domain of unknown function (DUF966) 	LOC_Os01g62200.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g078980.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200803.1.S1_at	A	A1TS	POPTR_0001s24230	POPTR_0001s24230 (11)	scaffold_1:23579629-23580114(-) (11)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os02g37790.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200804.1.S1_at	A	A1TS	POPTR_0001s24160	POPTR_0001s24160 (11)	scaffold_1:23523008-23523736(+) (11)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G59750.1	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II 	LOC_Os05g38570.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr2g114380.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
PtpAffx.200806.1.S1_at	A	A1TS	POPTR_0001s24090	POPTR_0001s24090 (11)	scaffold_1:23472381-23475921(-) (11)	NA	Q9LX73	E3 UFM1-protein ligase 1 homolog	AT3G46220.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611); Has 559 Blast hits to 533 proteins in 154 species: Archae - 3; Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50; Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink). 	LOC_Os05g02650.1	expressed protein	Medtr4g079360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200807.1.S1_at	A	A1TS	POPTR_0001s24050	POPTR_0001s24050 (11)	scaffold_1:23446595-23447170(-) (11)	NA	NA	NA	AT5G60050.1	BTB/POZ domain-containing protein 	LOC_Os04g49060.1	"H-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	Medtr4g079680.1	PRLI-interacting factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200808.1.S1_at	A	A1TS	POPTR_0001s24040	POPTR_0001s24040 (11)	scaffold_1:23432196-23432766(-) (11)	NA	Q6PIJ4	Nuclear factor related to kappa-B-binding protein	AT3G45830.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131 (source: NCBI BLink). 	LOC_Os05g02680.1	"nuclear factor related to kappa-B-binding protein, related, putative, expressed"	Medtr2g113980.1	"Nuclear factor related to kappa-B-binding protein, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200810.1.S1_s_at	A	A1TS	POPTR_0001s26770	POPTR_0001s26770 (11)	scaffold_1:25790818-25791908(+) (11)	NA	NA	NA	AT5G13800.1	pheophytinase 	LOC_Os06g24730.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g041220.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200811.1.S1_at	A	A1MS	POPTR_0001s26710	POPTR_0001s26710 (11)	scaffold_1:25731263-25731710(-) (11)	POPTR_0007s10800 (7)	NA	NA	NA	NA	LOC_Os01g59040.1	conserved hypothetical protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200812.1.S1_at	A	A1TS	POPTR_0001s26290	POPTR_0001s26290 (11)	scaffold_1:25350133-25350976(+) (11)	NA	Q8RWI9	ABC transporter G family member 15	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os05g13520.1	"white-brown complex homolog protein 12, putative, expressed"	Medtr4g104580.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.200813.1.S1_at	A	A1TS	POPTR_0001s26300	POPTR_0001s26300 (11)	scaffold_1:25360171-25360903(+) (11)	NA	Q8RWI9	ABC transporter G family member 15	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os05g13520.1	"white-brown complex homolog protein 12, putative, expressed"	Medtr4g104580.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.200814.1.S1_at	A	A1TS	POPTR_0001s26320	POPTR_0001s26320 (11)	scaffold_1:25366636-25369374(-) (11)	NA	Q9UBL3	Set1/Ash2 histone methyltransferase complex subunit ASH2	AT1G51450.1	TRAUCO 	LOC_Os12g04930.1	"ASH-like SPRY domain containing protein, putative, expressed"	Medtr4g104590.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200814.1.S1_s_at	A	A2TS	POPTR_0001s26320	POPTR_0009s05600 (11)//POPTR_0001s26320 (11)	scaffold_1:25369124-25369410(-) (11)//scaffold_9:5668363-5668649(-) (11)	NA	Q9UBL3	Set1/Ash2 histone methyltransferase complex subunit ASH2	AT1G51450.1	TRAUCO 	LOC_Os12g04930.1	"ASH-like SPRY domain containing protein, putative, expressed"	Medtr4g104590.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200815.1.S1_at	A	A1TS	POPTR_0001s26340	POPTR_0001s26340 (11)	scaffold_1:25383320-25383730(+) (11)	NA	NA	NA	AT5G12460.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr2g113940.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200816.1.S1_at	A	A1TS	POPTR_0001s26350	POPTR_0001s26350 (10)	scaffold_1:25384573-25386738(-) (10)	NA	NA	NA	AT5G12470.1	Protein of unknown function (DUF3411) 	LOC_Os01g72710.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200817.1.S1_at	A	A1MS	POPTR_0001s26380	POPTR_0001s26380 (10)	scaffold_1:25412130-25412673(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200818.1.S1_at	A	A1TS	POPTR_0001s26390	POPTR_0001s26390 (11)	scaffold_1:25432703-25433664(-) (11)	NA	NA	NA	AT1G51405.1	myosin-related 	LOC_Os03g11770.1	expressed protein	Medtr4g104600.1	"Gonadotropin, beta chain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200819.1.S1_at	A	A1TS	POPTR_0001s26400	POPTR_0001s26400 (11)	scaffold_1:25444788-25446018(+) (11)	NA	Q9SCM3	40S ribosomal protein S2-4	AT3G57490.1	Ribosomal protein S5 family protein 	LOC_Os03g59310.1	"ribosomal protein, putative, expressed"	Medtr4g157070.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.200820.1.S1_at	A	A1TS	POPTR_0001s26430	POPTR_0001s26430 (11)	scaffold_1:25467032-25467126(-) (11)	NA	Q38873	Calcium-dependent protein kinase 7	AT5G12480.1	calmodulin-domain protein kinase 7 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200820.1.S1_x_at	A	A1TS	POPTR_0001s26430	POPTR_0001s26430 (11)	scaffold_1:25465966-25467126(-) (11)	NA	Q38873	Calcium-dependent protein kinase 7	AT5G12480.1	calmodulin-domain protein kinase 7 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200821.1.S1_at	A	A1TS	POPTR_0001s26440	POPTR_0001s26440 (11)	scaffold_1:25473651-25474220(+) (11)	NA	NA	NA	AT4G37860.1	SPT2 chromatin protein 	LOC_Os02g44530.1	expressed protein	Medtr5g032140.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200822.1.S1_at	A	A1TS	POPTR_0001s26490	POPTR_0001s26490 (11)	scaffold_1:25508133-25508475(-) (11)	NA	NA	NA	AT3G20898.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g080740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200823.1.S1_at	A	A1TS	POPTR_0001s26510	POPTR_0001s26510 (11)	scaffold_1:25511600-25511995(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200824.1.S1_at	A	A1TS	POPTR_0001s26550	POPTR_0001s26550 (10)	scaffold_1:25533203-25534209(-) (11)	NA	NA	NA	AT1G51350.1	ARM repeat superfamily protein 	LOC_Os11g41990.2	"armadillo/beta-catenin-like repeat family protein, expressed"	Medtr5g104530.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200825.1.S1_at	A	A1TS	POPTR_0001s26560	POPTR_0001s26560 (10)	scaffold_1:25543680-25544139(+) (10)	NA	Q9LXV4	Zinc finger CCCH domain-containing protein 56	AT5G12850.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.1	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200826.1.S1_at	A	A1TS	POPTR_0001s26570	POPTR_0001s26570 (10)	scaffold_1:25548657-25549193(-) (11)	NA	Q7XJN6	Pentatricopeptide repeat-containing protein At2g40720	AT2G40720.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g10800.1	"pentatricopeptide, putative, expressed"	Medtr7g037660.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200828.1.S1_x_at	A	A1TS	POPTR_0001s26590	POPTR_0001s26590 (11)	scaffold_1:25578353-25579704(-) (11)	POPTR_0009s05860 (7)	Q9LXV2	Transcription factor MYB46	AT5G12870.1	myb domain protein 46 	LOC_Os12g33070.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g117450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200829.1.S1_at	A	A1TS	POPTR_0001s26600	POPTR_0001s26600 (11)	scaffold_1:25591460-25591853(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200830.1.S1_at	A	A1TS	POPTR_0001s26620	POPTR_0001s26620 (11)	scaffold_1:25603345-25603844(+) (11)	NA	O51625	tRNA-specific 2-thiouridylase mnmA	AT1G51310.1	transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases 	LOC_Os03g07850.1	"tRNA methyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200831.1.S1_at	A	A1TS	POPTR_0001s26640	POPTR_0001s26640 (11)	scaffold_1:25627236-25629695(+) (11)	NA	Q9SYC8	1-acyl-sn-glycerol-3-phosphate acyltransferase 3	AT1G51260.1	lysophosphatidyl acyltransferase 3 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.200834.1.S1_x_at	A	A1MA	POPTR_0001s26720	POPTR_0001s26720 (11)	scaffold_1:25734304-25734596(-) (11)	POPTR_0001s26690 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.200835.1.S1_at	A	A3TA	POPTR_0001s26680	POPTR_0001s26680 (9)//POPTR_0001s26720 (9)//POPTR_0001s26690 (9)	scaffold_1:25654895-25657402(+) (9)//scaffold_1:25685781-25685871(-) (9)//scaffold_1:25734196-25734286(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.200837.1.S1_at	A	A1TS	POPTR_0001s26800	POPTR_0001s26800 (11)	scaffold_1:25797628-25798211(-) (11)	NA	Q9SV07	Acyl-CoA--sterol O-acyltransferase 1	AT3G51970.1	acyl-CoA sterol acyl transferase 1 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr2g029750.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200838.1.S1_at	A	A1TS	POPTR_0001s26810	POPTR_0001s26810 (11)	scaffold_1:25812777-25813269(+) (11)	NA	Q9SV05	Serine/threonine-protein kinase-like protein At3g51990	AT3G51990.1	Protein kinase superfamily protein 	LOC_Os05g32170.1	"TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr3g148970.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200840.1.S1_at	A	A1TS	POPTR_0001s26860	POPTR_0001s26860 (11)	scaffold_1:25857637-25869654(+) (11)	NA	Q0WRX3	Serine carboxypeptidase-like 40	AT3G63470.1	serine carboxypeptidase-like 40 	LOC_Os07g46350.1	"OsSCP40 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr3g040960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.200841.1.S1_at	A	A1TA	POPTR_0001s26870	POPTR_0001s26870 (11)	scaffold_1:25870974-25871446(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200844.1.S1_at	A	A1TS	POPTR_0001s26900	POPTR_0001s26900 (11)	scaffold_1:25894121-25894640(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.200845.1.S1_at	A	A1MS	POPTR_0001s26910	POPTR_0001s26910 (10)	scaffold_1:25903263-25903838(-) (10)//scaffold_1258:3988-4554(+) (10)	NA	NA	NA	AT5G28040.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os07g44200.1	"transcription regulator, putative, expressed"	Medtr7g140470.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200846.1.S1_at	A	A2TS	POPTR_0001s26910	POPTR_0001s26910 (11)//POPTR_1258s00200 (11)	scaffold_1:25904594-25905001(-) (11)//scaffold_1258:2845-3240(+) (11)	NA	NA	NA	AT5G28040.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os07g44200.1	"transcription regulator, putative, expressed"	Medtr7g140470.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200848.1.S1_at	A	A1TS	POPTR_0001s26980	POPTR_0001s26980 (11)	scaffold_1:25949002-25950736(-) (11)	NA	Q8IY18	Structural maintenance of chromosomes protein 5	AT5G15920.1	structural maintenance of chromosomes 5 	LOC_Os05g51790.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	Medtr3g040170.1	Lipocalin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200849.1.S1_at	A	A1TS	POPTR_0001s26990	POPTR_0001s26990 (11)	scaffold_1:25966744-25967597(-) (11)	NA	NA	NA	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os06g04840.2	"leucine rich repeat protein, putative, expressed"	Medtr2g021160.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.200850.1.S1_at	A	A1TS	POPTR_0001s27000	POPTR_0001s27000 (11)	scaffold_1:25975104-25975633(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os08g42840.1	"leucine rich repeat protein, putative, expressed"	Medtr2g021160.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.200852.1.S1_at	A	A1TS	POPTR_0001s27040	POPTR_0001s27040 (11)	scaffold_1:25985203-25985732(+) (11)	NA	Q941F1	"Phospholipase A1-Igamma1, chloroplastic"	AT1G30370.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g32380.1	"phospholipase, putative, expressed"	Medtr4g104700.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.200853.1.S1_at	A	A1TS	POPTR_0001s27050	POPTR_0001s27050 (11)	scaffold_1:25986544-25987245(-) (11)	NA	Q9FLX9	Notchless protein homolog	AT5G52820.1	"WD-40 repeat family protein / notchless protein, putative "	LOC_Os10g01540.2	"notchless protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200855.1.S1_at	A	A1TS	POPTR_0001s27130	POPTR_0001s27130 (11)	scaffold_1:26077781-26077954(-) (11)	NA	Q84TI3	Protein OBERON 4	AT3G63500.2	Protein of unknown function (DUF1423) 	LOC_Os03g11890.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr4g049790.1	Arabidopsis thaliana 130.7kDa hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200856.1.S1_at	A	A1TS	POPTR_0001s27180	POPTR_0001s27180 (11)	scaffold_1:26103757-26104295(+) (11)	NA	Q8L709	Cation/H(+) antiporter 28	AT3G52080.1	cation/hydrogen exchanger 28 	LOC_Os12g44300.1	"CHX28, putative, expressed"	Medtr3g029990.1	Sodium/hydrogen exchanger 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200857.1.S1_at	A	A1TS	POPTR_0001s27220	POPTR_0001s27220 (11)	scaffold_1:26122479-26122744(+) (11)	NA	P31336	"Photosystem II 5 kDa protein, chloroplastic"	NA	NA	NA	NA	Medtr3g029860.1	"Photosystem II 5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200858.1.S1_at	A	A2TS	POPTR_0001s27260	POPTR_0001s27290 (11)//POPTR_0001s27260 (11)	scaffold_1:26155873-26155967(+) (11)//scaffold_1:26188931-26189025(+) (11)	NA	O65572	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200858.1.S1_x_at	A	A2TS	POPTR_0001s27290	POPTR_0001s27290 (11)//POPTR_0001s27260 (9)	scaffold_1:26155732-26156833(+) (9)//scaffold_1:26188790-26189991(+) (11)	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20086.1.A1_at	A	A1TS	POPTR_0003s13040	POPTR_0003s13040 (11)	scaffold_3:13439593-13439828(-) (11)	NA	O81742	Beta-adaptin-like protein C	AT4G23460.1	Adaptin family protein 	LOC_Os03g23950.1	"adapitin protein, putative, expressed"	Medtr4g103980.1	"Adaptin, N-terminal; Alpha/gamma adaptin, C-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.200860.1.S1_s_at	A	A1TS	POPTR_0001s27310	POPTR_0001s27310 (11)	scaffold_1:26219236-26221690(-) (11)	NA	Q70Z53	Protein FRA10AC1	AT4G15030.1	CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits to 5700 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses - 76; Other Eukaryotes - 2900 (source: NCBI BLink). 	LOC_Os11g42000.1	"FRA10AC1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200862.1.S1_at	A	A1TS	POPTR_0001s27390	POPTR_0001s27390 (10)	scaffold_1:26282292-26283449(-) (10)	NA	P28303	DNA-damage-inducible protein F	AT3G08040.2	MATE efflux family protein 	LOC_Os03g11734.2	"MATE efflux protein, putative, expressed"	Medtr3g028600.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.200863.1.S1_at	A	A1MS	POPTR_0001s27410	POPTR_0001s27410 (10)	scaffold_1:26303016-26303296(+) (10)	NA	Q9FHF9	"Pentatricopeptide repeat-containing protein At5g46460, mitochondrial"	AT5G46460.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g01836.1	"pentatricopeptide, putative, expressed"	Medtr4g136780.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200863.1.S1_s_at	A	A2TS	POPTR_0001s34330	POPTR_0001s34330 (11)//POPTR_0006s11300 (11)	scaffold_1:26303073-26303388(+) (10)//scaffold_1:32487026-32487346(+) (11)//scaffold_6:8581163-8581483(-) (11)	POPTR_0001s27410 (8)	Q9FHF9	"Pentatricopeptide repeat-containing protein At5g46460, mitochondrial"	AT5G46460.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g05720.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	Medtr4g136780.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200864.1.S1_x_at	A	A1TS	POPTR_0001s27440	POPTR_0001s27440 (11)	scaffold_1:26339449-26341629(-) (11)	NA	Q9SZ30	"Imidazole glycerol phosphate synthase hisHF, chloroplastic"	AT4G26900.1	HIS HF 	LOC_Os03g15120.1	"imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.200865.1.S1_at	A	A1TS	POPTR_0001s27490	POPTR_0001s27490 (11)	scaffold_1:26405866-26407615(+) (11)	NA	Q8VWG3	Protein TRANSPARENT TESTA 1	AT3G57670.1	C2H2-type zinc finger family protein 	LOC_Os06g40960.1	"ZOS6-05 - C2H2 zinc finger protein, expressed"	Medtr8g037110.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.200866.1.S1_at	A	A1TS	POPTR_0001s27500	POPTR_0001s27500 (11)	scaffold_1:26413804-26414260(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g31170.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200867.1.S1_at	A	A1TS	POPTR_0001s27600	POPTR_0001s27600 (11)	scaffold_1:26478036-26479871(-) (11)	NA	Q9DDY9	Polyadenylate-binding protein 2-A	AT3G12640.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g39629.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g030300.1	"Short-chain dehydrogenase/reductase SDR; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	GO:0003676|nucleic acid binding	NA
PtpAffx.200868.1.S1_at	A	A1TS	POPTR_0001s27610	POPTR_0001s27610 (9)	scaffold_1:26491834-26492248(+) (11)	NA	Q6H7P8	Zinc finger A20 and AN1 domain-containing stress-associated protein 4	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os02g10200.2	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g087220.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.200869.1.S1_at	A	A1TS	POPTR_0001s27620	POPTR_0001s27620 (11)	scaffold_1:26499350-26499587(+) (11)	NA	Q9LHJ8	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	AT3G12630.1	A20/AN1-like zinc finger family protein 	LOC_Os09g31200.1	"AN1-like zinc finger domain containing protein, expressed"	Medtr3g030430.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.200870.1.S1_at	A	A1TS	POPTR_0001s27650	POPTR_0001s27650 (11)	scaffold_1:26519293-26519837(+) (11)	NA	Q9ZRT1	Protein gamma response 1	AT3G52115.1	gamma response gene 1 	LOC_Os06g41050.1	expressed protein	Medtr8g037320.1	"Protein gamma response 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200871.1.S1_at	A	A1TS	POPTR_0001s27670	POPTR_0001s27670 (11)	scaffold_1:26530034-26530950(+) (11)	NA	Q94C11	Splicing factor 4-like protein	AT3G52120.1	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein 	LOC_Os09g10930.2	"gamma response I protein, putative, expressed"	Medtr8g037400.1	SWAP/Surp; D111/G-patch 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.200871.1.S1_x_at	A	A1TS	POPTR_0001s27670	POPTR_0001s27670 (11)	scaffold_1:26530014-26531049(+) (11)	NA	Q94C11	Splicing factor 4-like protein	AT3G52120.1	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein 	LOC_Os09g10930.2	"gamma response I protein, putative, expressed"	Medtr8g037400.1	SWAP/Surp; D111/G-patch 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.200872.1.S1_at	A	A1TS	POPTR_0001s27770	POPTR_0001s27770 (9)	scaffold_1:26617212-26618292(-) (10)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.200873.1.S1_at	A	A1TS	POPTR_0001s27785	POPTR_0001s27785 (10)	scaffold_1:26668001-26668220(-) (11)	NA	NA	NA	AT3G52130.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	Medtr3g030780.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200874.1.S1_at	A	A1TS	POPTR_0001s27800	POPTR_0001s27800 (11)	scaffold_1:26688980-26689211(+) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT3G52140.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g48620.2	"tetratricopeptide repeat, putative, expressed"	Medtr3g030760.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200874.1.S1_s_at	A	A1TS	POPTR_0001s27800	POPTR_0001s27800 (11)	scaffold_1:26688265-26689033(+) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT3G52140.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g48620.2	"tetratricopeptide repeat, putative, expressed"	Medtr3g030760.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200875.1.S1_at	A	A1TS	POPTR_0001s27810	POPTR_0001s27810 (11)	scaffold_1:26695181-26698173(-) (11)	NA	Q38813	"Chaperone protein dnaJ 1, mitochondrial"	AT5G48030.1	gametophytic factor 2 	LOC_Os12g07060.1	"chaperone protein dnaJ, putative, expressed"	Medtr3g030790.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.200875.1.S1_x_at	A	A1TS	POPTR_0001s27810	POPTR_0001s27810 (11)	scaffold_1:26695038-26698171(-) (11)	NA	Q38813	"Chaperone protein dnaJ 1, mitochondrial"	AT5G48030.1	gametophytic factor 2 	LOC_Os12g07060.1	"chaperone protein dnaJ, putative, expressed"	Medtr3g030790.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.200876.1.S1_at	A	A1TS	POPTR_0001s27820	POPTR_0001s27820 (9)	scaffold_1:26715048-26715560(+) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT5G48060.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr4g024650.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200879.1.S1_at	A	A1TS	POPTR_0001s27890	POPTR_0001s27890 (11)	scaffold_1:26747756-26748659(+) (11)	NA	O48790	Cyclin-B1-4	AT2G26760.1	Cyclin B1;4 	LOC_Os01g59120.1	"cyclin, putative, expressed"	Medtr5g096040.1	"Cyclin, N-terminal "	NA	NA	GO:0005634|nucleus
PtpAffx.200880.1.S1_at	A	A1TS	POPTR_0001s27930	POPTR_0001s27930 (11)	scaffold_1:26771246-26771585(+) (11)	NA	NA	NA	AT5G12260.1	BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g18060.1	"sugar transporter superfamily, putative, expressed"	Medtr8g026520.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200882.1.S1_at	A	A1TS	POPTR_0001s27970	POPTR_0001s27970 (11)	scaffold_1:26797783-26798285(+) (11)	NA	Q93VV5	Probable peptide/nitrate transporter At1g59740	AT1G59740.1	Major facilitator superfamily protein 	LOC_Os01g54515.1	"peptide transporter PTR2, putative, expressed"	Medtr7g134690.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.200883.1.S1_at	A	A1TS	POPTR_0001s27990	POPTR_0001s27990 (11)	scaffold_1:26807115-26807678(-) (11)	NA	Q5BIV3	Pentatricopeptide repeat-containing protein At1g11900	AT1G11900.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g40320.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g007140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200884.1.S1_at	A	A1TS	POPTR_0001s28010	POPTR_0001s28010 (11)	scaffold_1:26816759-26816912(+) (11)	NA	NA	NA	AT5G19473.1	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os10g26540.1	expressed protein	Medtr5g096390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200885.1.S1_at	A	A1TS	POPTR_0001s28050	POPTR_0001s28050 (10)	scaffold_1:26862715-26863142(+) (11)	NA	Q8RY82	F-box protein At2g32560	AT2G32560.1	F-box family protein 	LOC_Os01g17390.1	"OsFBX5 - F-box domain containing protein, expressed"	Medtr5g096190.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200885.1.S1_x_at	A	A1TS	POPTR_0001s28050	POPTR_0001s28050 (10)	scaffold_1:26862694-26863142(+) (11)	NA	Q8RY82	F-box protein At2g32560	AT2G32560.1	F-box family protein 	LOC_Os01g17390.1	"OsFBX5 - F-box domain containing protein, expressed"	Medtr5g096190.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200886.1.S1_at	A	A1TS	POPTR_0001s28060	POPTR_0001s28060 (11)	scaffold_1:26863143-26864100(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g096180.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200887.1.S1_s_at	A	A2TS	POPTR_0001s28150	POPTR_0001s28150 (11)//POPTR_0009s07330 (11)	scaffold_1:26924782-26925833(-) (11)//scaffold_9:6869414-6870378(-) (11)	NA	Q9FMP5	Calcium-dependent protein kinase 17	AT5G12180.1	calcium-dependent protein kinase 17 	LOC_Os01g59360.1	"CAMK_CAMK_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200888.1.S1_at	A	A1TS	POPTR_0001s28170	POPTR_0001s28170 (11)	scaffold_1:26937171-26938583(+) (11)	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT5G13530.1	protein kinases;ubiquitin-protein ligases 	LOC_Os05g32570.1	"RING E3 ligase protein, putative, expressed"	Medtr3g005710.1	"KEG ; protein binding, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200889.1.S1_at	A	A1TS	POPTR_0001s28170	POPTR_0001s28170 (11)	scaffold_1:26942430-26943160(+) (11)	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT5G13530.1	protein kinases;ubiquitin-protein ligases 	LOC_Os05g32570.1	"RING E3 ligase protein, putative, expressed"	Medtr3g005710.1	"KEG ; protein binding, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200891.1.S1_at	A	A1TS	POPTR_0001s28240	POPTR_0001s28240 (11)	scaffold_1:27003070-27004483(-) (11)	NA	NA	NA	AT5G13500.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g32060.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200891.1.S1_x_at	A	A1TS	POPTR_0001s28240	POPTR_0001s28240 (11)	scaffold_1:27003070-27004498(-) (11)	NA	NA	NA	AT5G13500.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g32060.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200894.1.S1_at	A	A1TS	POPTR_0001s28250	POPTR_0001s28250 (11)	scaffold_1:27032797-27033294(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT5G49700.1	Predicted AT-hook DNA-binding family protein 	LOC_Os09g28930.1	"DNA binding protein, putative"	Medtr3g149230.1	Predicted AT-hook DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200895.1.S1_at	A	A1TS	POPTR_0001s28290	POPTR_0001s28290 (11)	scaffold_1:27068762-27069248(-) (11)	NA	NA	NA	AT5G12330.4	Lateral root primordium (LRP) protein-related 	LOC_Os01g72490.2	"LRP1, putative, expressed"	Medtr5g096790.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200896.1.S1_at	A	A1TS	POPTR_0001s28310	POPTR_0001s28310 (11)	scaffold_1:27104679-27105230(-) (11)	NA	NA	NA	AT5G12340.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g31970.1	expressed protein	Medtr5g096870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200897.1.S1_at	A	A1TS	POPTR_0001s28350	POPTR_0001s28350 (11)	scaffold_1:27145791-27147056(+) (11)	NA	NA	NA	AT4G03250.1	Homeodomain-like superfamily protein 	LOC_Os01g48170.1	homeobox domain containing protein	Medtr5g096920.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.200899.1.S1_at	A	A1TS	POPTR_0001s28380	POPTR_0001s28380 (11)	scaffold_1:27196400-27196983(+) (11)	NA	Q7TPD0	Integrator complex subunit 3	AT4G14590.1	embryo defective 2739 	LOC_Os11g07030.1	"integrator complex subunit 3, putative, expressed"	Medtr8g147600.1	Immunoglobulin/major histocompatibility complex 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2009.1.S1_at	A	A1TS	POPTR_0008s06120	POPTR_0008s06120 (9)	scaffold_8:3620459-3620893(-) (9)	NA	Q6NUK1	Calcium-binding mitochondrial carrier protein SCaMC-1	AT3G55640.1	Mitochondrial substrate carrier family protein 	LOC_Os03g16080.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g088430.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2009.2.S1_a_at	A	A2TS	POPTR_0008s06120	POPTR_0008s06120 (11)//POPTR_0010s20490 (11)	scaffold_10:18046951-18047469(+) (11)//scaffold_8:3623988-3624508(-) (9)	NA	Q6NUK1	Calcium-binding mitochondrial carrier protein SCaMC-1	AT3G55640.1	Mitochondrial substrate carrier family protein 	LOC_Os03g16080.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g088430.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2009.2.S1_at	A	A1TS	POPTR_0010s20490	POPTR_0010s20490 (10)	scaffold_10:18046893-18047805(+) (10)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT3G55640.1	Mitochondrial substrate carrier family protein 	LOC_Os03g16080.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g088430.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200900.1.S1_at	A	A1TS	POPTR_0001s28390	POPTR_0001s28390 (11)	scaffold_1:27202688-27203142(+) (11)	NA	O81117	Cytochrome P450 94A1	AT3G56630.1	"cytochrome P450, family 94, subfamily D, polypeptide 2 "	LOC_Os01g58960.1	"cytochrome P450, putative, expressed"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.200901.1.S1_at	A	A1TS	POPTR_0001s28410	POPTR_0001s28410 (11)	scaffold_1:27208739-27209845(+) (11)	NA	Q94CK4	Annexin D8	AT5G12380.1	annexin 8 	LOC_Os02g51750.1	"annexin, putative, expressed"	Medtr8g039850.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.200902.1.S1_at	A	A1MS	POPTR_0001s28470	POPTR_0001s28470 (10)	scaffold_1:27230336-27231186(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200903.1.S1_at	A	A1TS	POPTR_0001s28490	POPTR_0001s28490 (11)	scaffold_1:27248957-27250513(+) (11)	NA	NA	NA	AT5G58600.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18110.1	"proteins of unknown function domain containing protein, putative, expressed"	Medtr5g079650.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200904.1.S1_at	A	A1TS	POPTR_0001s28520	POPTR_0001s28520 (11)	scaffold_1:27304912-27305372(+) (11)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT1G07150.2	mitogen-activated protein kinase kinase kinase 13 	LOC_Os03g18170.1	"STE_MEKK_ste11_MAP3K.13 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g079860.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200905.1.S1_at	A	A3TS	POPTR_0001s28530	POPTR_0001s28530 (10)//POPTR_0018s06130 (10)//POPTR_0006s04030 (10)	scaffold_1:23751475-23752075(+) (9)//scaffold_1:27327152-27327811(-) (11)//scaffold_1:28990843-28991503(+) (9)//scaffold_18:5770263-5770923(+) (10)//scaffold_5:14475629-14476229(+) (9)//scaffold_6:2731908-2732568(+) (10)	POPTR_0022s00570 (8)//POPTR_0001s24480 (8)//POPTR_0001s30510 (7)//POPTR_0015s01440 (7)//POPTR_0011s12860 (7)//POPTR_0001s41250 (6)//POPTR_0005s17840 (6)	NA	NA	AT5G05800.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g35190.1	"transposon protein, putative, CACTA, En/Spm sub-class"	Medtr3g093090.1	"PIF-like orf1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200906.1.S1_at	A	A1MS	POPTR_0001s28560	POPTR_0001s28560 (9)	scaffold_1:27348177-27348527(+) (9)	NA	P51851	Pyruvate decarboxylase isozyme 2 (Fragment)	AT5G54960.1	pyruvate decarboxylase-2 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	AC233100_56.1	"Thiamine pyrophosphate enzyme, N-terminal TPP binding region AC233100.6 213439-209408 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200907.1.S1_at	A	A1MS	POPTR_0001s28560	POPTR_0001s28560 (10)	scaffold_1:27349075-27349838(+) (11)	NA	P51851	Pyruvate decarboxylase isozyme 2 (Fragment)	AT5G54960.1	pyruvate decarboxylase-2 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	AC233100_56.1	"Thiamine pyrophosphate enzyme, N-terminal TPP binding region AC233100.6 213439-209408 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200908.1.S1_x_at	A	A1TS	POPTR_0001s28610	POPTR_0001s28610 (11)	scaffold_1:27373511-27373656(+) (11)	NA	Q8L9T5	RING-H2 finger protein ATL2	AT3G16720.1	TOXICOS EN LEVADURA 2 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g080230.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200909.1.S1_at	A	A1TS	POPTR_0001s28630	POPTR_0001s28630 (11)	scaffold_1:27397644-27398201(-) (11)	NA	NA	NA	AT2G30090.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g55530.1	"HLS, putative, expressed"	Medtr5g015900.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.200910.1.S1_at	A	A1TS	POPTR_0001s28690	POPTR_0001s28690 (11)	scaffold_1:27462680-27463259(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G38300.1	myb-like HTH transcriptional regulator family protein 	LOC_Os12g01490.1	"MYB family transcription factor, putative, expressed"	Medtr7g075810.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200911.1.S1_s_at	A	A2TS	POPTR_0001s28700	POPTR_0009s07910 (11)//POPTR_0001s28700 (11)	scaffold_1:27482565-27483345(+) (11)//scaffold_9:7328467-7329265(+) (11)	NA	O65020	Ethylene-overproduction protein 1	AT3G51770.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os03g18360.1	"BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr4g012110.1	"Ethylene-overproduction protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200913.1.S1_at	A	A1TS	POPTR_0001s28750	POPTR_0001s28750 (11)	scaffold_1:27511330-27511640(-) (11)	NA	P93028	Ubiquitin-activating enzyme E1 1	AT2G30110.1	ubiquitin-activating enzyme 1 	LOC_Os11g01510.3	"ubiquitin-activating enzyme, putative, expressed"	Medtr5g080760.1	"Ubiquitin-activating enzyme, E1; Lipase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.200913.1.S1_x_at	A	A1TS	POPTR_0001s28750	POPTR_0001s28750 (11)	scaffold_1:27511330-27511640(-) (11)	NA	P93028	Ubiquitin-activating enzyme E1 1	AT2G30110.1	ubiquitin-activating enzyme 1 	LOC_Os11g01510.3	"ubiquitin-activating enzyme, putative, expressed"	Medtr5g080760.1	"Ubiquitin-activating enzyme, E1; Lipase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.200915.1.S1_at	A	A1MS	POPTR_0001s28770	POPTR_0001s28770 (9)	scaffold_1:27556089-27557227(+) (10)	NA	NA	NA	AT5G58510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g18440.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200917.1.S1_at	A	A1TS	POPTR_0001s28840	POPTR_0001s28840 (11)	scaffold_1:27621434-27621737(+) (11)	NA	Q8LBW3	LOB domain-containing protein 12	AT2G30130.1	Lateral organ boundaries (LOB) domain family protein 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g090730.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200918.1.S1_at	A	A1TS	POPTR_0001s28850	POPTR_0001s28850 (11)	scaffold_1:27631339-27631808(+) (11)	NA	Q9LU68	Protein CHLOROPLAST IMPORT APPARATUS 2	AT1G07050.1	CCT motif family protein 	LOC_Os02g05470.1	"CCT motif family protein, expressed"	Medtr5g080950.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200918.1.S1_s_at	A	A1TS	POPTR_0001s28850	POPTR_0001s28850 (11)	scaffold_1:27631288-27631667(+) (11)	NA	Q9LU68	Protein CHLOROPLAST IMPORT APPARATUS 2	AT1G07050.1	CCT motif family protein 	LOC_Os02g05470.1	"CCT motif family protein, expressed"	Medtr5g080950.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200919.1.S1_at	A	A1TS	POPTR_0001s28910	POPTR_0001s28910 (10)	scaffold_1:27657356-27657961(+) (10)	NA	NA	NA	AT2G30140.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os05g41400.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200921.1.S1_at	A	A1TS	POPTR_0001s28950	POPTR_0001s28950 (9)	scaffold_1:27670577-27672564(-) (10)	NA	NA	NA	AT1G07010.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os10g25430.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr5g081100.1	Metallophosphoesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200923.1.S1_at	A	A1TS	POPTR_0001s28960	POPTR_0001s28960 (11)	scaffold_1:27711437-27711979(+) (11)	NA	Q1HDT2	Cation/H(+) antiporter 24	AT5G37060.1	cation/H+ exchanger 24 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr3g143250.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.200924.1.S1_at	A	A1TS	POPTR_0001s28980	POPTR_0001s28980 (11)	scaffold_1:27737168-27737863(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g25430.1	"ZOS9-07 - C2H2 zinc finger protein, expressed"	Medtr4g121560.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.200926.1.S1_at	A	A1TS	POPTR_0001s29020	POPTR_0001s29020 (11)	scaffold_1:27760520-27767296(-) (11)	NA	P02870	Lectin	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr4g121650.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.200926.1.S1_x_at	A	A1TS	POPTR_0001s29020	POPTR_0001s29020 (11)	scaffold_1:27760520-27767315(-) (11)	NA	P02870	Lectin	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr4g121650.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.200927.1.S1_at	A	A1TS	POPTR_0001s29020	POPTR_0001s29020 (9)	scaffold_1:27766616-27766820(-) (9)	NA	P02870	Lectin	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr4g121650.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.200927.1.S1_x_at	A	A1TS	POPTR_0001s29020	POPTR_0001s29020 (9)	scaffold_1:27766616-27766978(-) (9)	NA	P02870	Lectin	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr4g121650.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.200928.1.S1_x_at	A	A1TS	POPTR_0001s29070	POPTR_0001s29070 (11)	scaffold_1:27821156-27821490(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200929.1.S1_x_at	A	A1TS	POPTR_0001s34530	POPTR_0001s34530 (11)	scaffold_1:32703617-32704527(+) (11)	NA	Q96PB1	CAS1 domain-containing protein 1	AT2G34410.2	O-acetyltransferase family protein 	LOC_Os01g44040.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200930.1.S1_at	A	A1TS	POPTR_0001s34540	POPTR_0001s34540 (11)	scaffold_1:32722661-32723229(+) (11)	NA	O49725	Probable purine permease 10	AT4G18210.1	purine permease 10 	LOC_Os02g46380.1	"purine permease, putative, expressed"	Medtr2g018910.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200931.1.S1_at	A	A1TS	POPTR_0001s34580	POPTR_0001s34580 (11)	scaffold_1:32788290-32789324(+) (11)//scaffold_95:50094-51129(+) (10)	NA	Q6MAS9	Glycogen synthase	AT4G18240.1	starch synthase 4 	LOC_Os05g45720.1	"starch synthase, putative, expressed"	Medtr3g123800.1	"Glycosyl transferase, group 1; N-6 Adenine-specific DNA methylase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200932.1.S1_at	A	A1TS	POPTR_0095s00230	POPTR_0095s00230 (11)	scaffold_95:55146-55586(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200933.1.S1_at	A	A1TS	POPTR_0001s34590	POPTR_0001s34590 (11)	scaffold_1:32797811-32798034(-) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT1G78520.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os01g14140.1	"X8 domain containing protein, expressed"	Medtr3g159470.2	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200934.1.S1_at	A	A1TS	POPTR_0001s34600	POPTR_0001s34600 (11)	scaffold_1:32806293-32806883(-) (11)	NA	Q9LVX1	Zinc finger CCCH domain-containing protein 41	AT3G27700.2	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os04g32340.1	"RNA-binding motif protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200934.1.S1_s_at	A	A1TS	POPTR_0001s34600	POPTR_0001s34600 (11)	scaffold_1:32806339-32806694(-) (11)	NA	Q9LVX1	Zinc finger CCCH domain-containing protein 41	AT3G27700.2	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os04g32340.1	"RNA-binding motif protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.200935.1.S1_at	A	A1TS	POPTR_0001s34610	POPTR_0001s34610 (11)	scaffold_1:32846119-32846619(+) (11)	NA	Q9FL07	RING-H2 finger protein ATL46	AT5G40250.1	RING/U-box superfamily protein 	LOC_Os02g50930.1	"RING-H2 finger protein, putative, expressed"	Medtr5g035920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200936.1.S1_at	A	A1TS	POPTR_0001s34630	POPTR_0001s34630 (11)	scaffold_1:32861662-32861811(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G01490.1	Protein kinase superfamily protein 	LOC_Os05g50190.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200937.1.S1_s_at	A	A1TS	POPTR_0001s34630	POPTR_0001s34630 (11)	scaffold_1:32862272-32863875(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G01490.1	Protein kinase superfamily protein 	LOC_Os05g50190.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.200938.1.S1_at	A	A1MS	POPTR_0001s34650	POPTR_0001s34650 (11)	scaffold_1:32918625-32918748(-) (11)	NA	Q54S83	"Protein midA, mitochondrial"	AT3G28700.1	Protein of unknown function (DUF185) 	LOC_Os01g40620.2	"Uncharacterized ACR, COG1565 containing protein, putative, expressed"	Medtr4g100910.1	Protein of unknown function DUF185 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200938.1.S1_x_at	A	A1MS	POPTR_0001s34650	POPTR_0001s34650 (11)	scaffold_1:32918603-32918748(-) (11)	POPTR_0017s11340 (7)	Q54S83	"Protein midA, mitochondrial"	AT3G28700.1	Protein of unknown function (DUF185) 	LOC_Os01g40620.2	"Uncharacterized ACR, COG1565 containing protein, putative, expressed"	Medtr4g100910.1	Protein of unknown function DUF185 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200939.1.S1_at	A	A1TS	POPTR_0001s34700	POPTR_0001s34700 (10)	scaffold_1:32950462-32954399(-) (11)	NA	NA	NA	AT3G01370.1	CRM family member 2 	LOC_Os04g39060.2	"CRS1/YhbY domain containing protein, expressed"	Medtr6g009130.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.200941.1.S1_at	A	A1TS	POPTR_0001s34840	POPTR_0001s34840 (11)	scaffold_1:33072161-33072411(+) (11)	NA	NA	NA	AT1G74860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits to 193 proteins in 61 species: Archae - 0; Bacteria - 9; Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other Eukaryotes - 49 (source: NCBI BLink). 	LOC_Os02g37020.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200943.1.S1_at	A	A1TS	POPTR_0001s34850	POPTR_0001s34850 (11)	scaffold_1:33082557-33082971(+) (11)	NA	O04567	Probable inactive receptor kinase At1g27190	AT3G28450.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g41030.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr6g010010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.200944.1.S1_at	A	A1TS	POPTR_0001s34870	POPTR_0001s34870 (11)	scaffold_1:33096253-33096790(-) (11)	NA	NA	NA	AT3G01516.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14690.1); Has 67 Blast hits to 67 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g45160.1	conserved hypothetical protein	Medtr6g005960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200945.1.S1_at	A	A1TS	POPTR_0001s34880	POPTR_0001s34880 (11)	scaffold_1:33108775-33109576(-) (11)	NA	P51102	Dihydroflavonol-4-reductase	AT5G14700.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g45200.1	"cinnamoyl-CoA reductase-related, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200947.1.S1_at	A	A1TS	POPTR_0001s34920	POPTR_0001s34920 (10)	scaffold_1:33179656-33181017(+) (10)	NA	Q9LK90	Putative phospholipid-transporting ATPase 8	AT3G27870.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g29380.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr6g006450.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.200949.1.S1_s_at	A	A1TS	POPTR_0001s34960	POPTR_0001s34960 (11)	scaffold_1:33221655-33223191(-) (11)	NA	O22609	"Protease Do-like 1, chloroplastic"	AT3G27925.1	DegP protease 1 	LOC_Os05g49380.2	"OsDegp9 - Putative Deg protease homologue, expressed"	Medtr6g006560.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.200950.1.S1_at	A	A1TS	POPTR_0001s34980	POPTR_0001s34980 (11)	scaffold_1:33271598-33271901(+) (11)	NA	Q8XWM7	L-aspartate oxidase 1	AT5G14760.1	L-aspartate oxidase 	LOC_Os02g04170.3	"L-aspartate oxidase 1, putative, expressed"	Medtr6g006620.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; Rhodopsin-like GPCR superfamily; Blue (type 1) copper domain; Fumarate reductase, flavoprotein subunit "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.200951.1.S1_at	A	A1TS	POPTR_0001s35010	POPTR_0001s35010 (11)	scaffold_1:33288460-33291581(-) (11)	NA	NA	NA	AT5G14550.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os05g07790.1	"DNA binding protein, putative, expressed"	Medtr4g143290.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.200952.1.S1_at	A	A1TS	POPTR_0001s35030	POPTR_0001s35030 (11)	scaffold_1:33294874-33295228(-) (11)	NA	Q9LYK2	High affinity nitrate transporter 2.7	AT5G14570.1	high affinity nitrate transporter 2.7 	LOC_Os01g50820.1	"transporter, major facilitator family, putative, expressed"	AC233663_16.1	"High affinity nitrate transporter, putative AC233663.2 118942-120870 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200953.1.S1_at	A	A1TS	POPTR_0001s35040	POPTR_0001s35040 (11)	scaffold_1:33312632-33314406(+) (11)	NA	A2RUV5	Probable ATP-dependent DNA helicase HFM1	AT3G27730.1	ATP binding;ATP-dependent helicases;DNA helicases 	LOC_Os02g40450.1	"DEAD/DEAH box helicase domain containing protein, expressed"	Medtr2g076960.1	AAA ATPase; Sec63; ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.200954.1.S1_at	A	A1TS	POPTR_0001s35050	POPTR_0001s35050 (11)	scaffold_1:33326324-33326887(+) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT2G16890.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os09g16030.1	"cytokinin-O-glucosyltransferase 1, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200955.1.S1_at	A	A1TS	POPTR_0001s35070	POPTR_0001s35070 (11)	scaffold_1:33346293-33347308(-) (11)	NA	B3DZ86	Polyribonucleotide nucleotidyltransferase	AT5G14580.1	"polyribonucleotide nucleotidyltransferase, putative "	LOC_Os07g07310.1	"polynucleotide phosphorylase, putative, expressed"	Medtr6g005390.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Polyribonucleotide nucleotidyltransferase; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.200956.1.S1_at	A	A1TS	POPTR_0001s35120	POPTR_0001s35120 (11)	scaffold_1:33378452-33381361(-) (11)	NA	NA	NA	AT3G27770.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 158 Blast hits to 157 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os01g07700.3	expressed protein	Medtr3g114140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200957.1.S1_at	A	A1TS	POPTR_0001s35130	POPTR_0001s35130 (11)	scaffold_1:33388385-33389752(+) (11)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT3G01550.1	phosphoenolpyruvate (pep)/phosphate translocator 2 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr6g005420.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.200958.1.S1_at	A	A1TS	POPTR_0001s35140	POPTR_0001s35140 (11)	scaffold_1:33397584-33397932(-) (11)	NA	Q9S7L2	Transcription factor MYB98	AT3G27785.1	myb domain protein 118 	LOC_Os12g07610.1	"MYB family transcription factor, putative"	Medtr3g114110.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200959.1.S1_at	A	A1TS	POPTR_0001s35140	POPTR_0001s35140 (11)	scaffold_1:33398007-33399579(-) (11)	NA	Q9S7L2	Transcription factor MYB98	AT3G27785.1	myb domain protein 118 	LOC_Os12g07610.1	"MYB family transcription factor, putative"	Medtr3g114110.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200961.1.S1_at	A	A1TS	POPTR_0001s35160	POPTR_0001s35160 (11)	scaffold_1:33415632-33415674(-) (11)	NA	Q9LXE5	DNA (cytosine-5)-methyltransferase DRM1	AT5G15380.1	domains rearranged methylase 1 	LOC_Os03g02010.2	"DNA methyltransferase protein, putative, expressed"	Medtr5g019320.1	C-5 cytosine-specific DNA methylase; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200962.1.S1_at	A	A1TS	POPTR_0001s35170	POPTR_0001s35170 (11)	scaffold_1:33443160-33443810(+) (11)	NA	Q66I84	Sister chromatid cohesion protein DCC1	AT2G44580.1	zinc ion binding 	LOC_Os05g02810.1	"protein binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200963.1.S1_at	A	A1TS	POPTR_0001s35180	POPTR_0001s35180 (11)	scaffold_1:33476902-33477029(+) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT5G14650.1	Pectin lyase-like superfamily protein 	LOC_Os01g44970.1	"polygalacturonase, putative, expressed"	Medtr6g005520.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.200963.1.S1_s_at	A	A1TS	POPTR_0001s35180	POPTR_0001s35180 (11)	scaffold_1:33476233-33476899(+) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT5G14650.1	Pectin lyase-like superfamily protein 	LOC_Os01g44970.1	"polygalacturonase, putative, expressed"	Medtr6g005520.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.200964.1.S1_at	A	A1TS	POPTR_0001s35200	POPTR_0001s35200 (11)	scaffold_1:33493281-33496242(+) (11)	NA	P81391	Myb-related protein 305	AT3G27810.1	myb domain protein 21 	LOC_Os03g20090.1	"MYB family transcription factor, putative, expressed"	Medtr1g140720.1	Phosphoglycerate/bisphosphoglycerate mutase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200965.1.S1_at	A	A1TS	POPTR_0001s35240	POPTR_0001s35240 (11)	scaffold_1:33532448-33532535(-) (11)	NA	NA	NA	AT3G27670.1	ARM repeat superfamily protein 	LOC_Os01g07490.1	"RST1, putative, expressed"	Medtr6g005020.1	"RST1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200965.1.S1_s_at	A	A1TS	POPTR_0001s35240	POPTR_0001s35240 (11)	scaffold_1:33532465-33532791(-) (11)	NA	NA	NA	AT3G27670.1	ARM repeat superfamily protein 	LOC_Os01g07490.1	"RST1, putative, expressed"	Medtr6g005020.1	"RST1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200967.1.S1_at	A	A1TS	POPTR_0001s35300	POPTR_0001s35300 (11)	scaffold_1:33634270-33634934(-) (11)	NA	Q5ZJW8	Denticleless protein homolog	AT3G27640.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g49200.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g005150.1	"Denticleless protein homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200968.1.S1_at	A	A1TS	POPTR_0001s35310	POPTR_0001s35310 (11)	scaffold_1:33652078-33652520(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200969.1.S1_at	A	A1TS	POPTR_0001s35320	POPTR_0001s35320 (11)	scaffold_1:33676082-33676625(-) (11)	NA	Q9WTK3	Glycosylphosphatidylinositol anchor attachment 1 protein	AT5G19130.2	GPI transamidase component family protein / Gaa1-like family protein 	LOC_Os01g48980.1	"GPI transamidase component family protein, putative, expressed"	Medtr4g143270.1	"Gaa1-like, GPI transamidase component "	NA	NA	GO:0042765|GPI-anchor transamidase complex||GO:0071212|subsynaptic reticulum
PtpAffx.200970.1.S1_at	A	A1TS	POPTR_0001s35330	POPTR_0001s35330 (11)	scaffold_1:33692965-33694624(+) (11)	NA	P11654	Nuclear pore membrane glycoprotein 210	AT5G40480.1	embryo defective 3012 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200972.1.S1_at	A	A1TS	POPTR_0001s35360	POPTR_0001s35360 (9)	scaffold_1:33720951-33721724(+) (11)	NA	P48809	Heterogeneous nuclear ribonucleoprotein 27C	AT5G40490.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g38410.3	"RNA recognition motif containing protein, putative, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.200972.1.S1_x_at	A	A1TS	POPTR_0001s35360	POPTR_0001s35360 (10)	scaffold_1:33720356-33721724(+) (11)	NA	P48809	Heterogeneous nuclear ribonucleoprotein 27C	AT5G40490.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g38410.3	"RNA recognition motif containing protein, putative, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.200973.1.S1_at	A	A1TS	POPTR_0001s35370	POPTR_0001s35370 (11)	scaffold_1:33724118-33724587(-) (11)	NA	NA	NA	AT3G09580.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os07g43370.1	"amine oxidase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200974.1.S1_at	A	A1TS	POPTR_0001s35440	POPTR_0001s35440 (11)	scaffold_1:33759892-33760334(-) (11)	NA	Q8GWV5	U-box domain-containing protein 3	AT5G14510.1	ARM repeat superfamily protein 	LOC_Os01g02200.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g077930.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200975.1.S1_s_at	A	A1TS	POPTR_0001s35450	POPTR_0001s35450 (11)	scaffold_1:33787549-33787643(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G14500.1	aldose 1-epimerase family protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.200976.1.S1_at	A	A1TS	POPTR_0001s35460	POPTR_0001s35460 (11)	scaffold_1:33794956-33797171(+) (11)	NA	Q84JC0	Ribosomal RNA-processing protein 8	AT5G40530.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g38060.1	"methyltransferase domain containing protein, expressed"	Medtr2g080740.1	"Protein of unknown function DUF691, methyltransferases-related "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.200977.1.S1_at	A	A1TS	POPTR_0001s35500	POPTR_0001s35500 (11)	scaffold_1:33836030-33836543(+) (11)	NA	Q67XL4	"Uncharacterized CRM domain-containing protein At3g25440, chloroplastic"	AT3G27550.1	RNA-binding CRS1 / YhbY (CRM) domain protein 	LOC_Os05g05300.1	"CRS1/YhbY domain containing protein, putative, expressed"	Medtr1g068790.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.200979.1.S1_at	A	A1TS	POPTR_0001s35710	POPTR_0001s35710 (9)	scaffold_1:34044361-34046079(-) (10)	NA	O14802	DNA-directed RNA polymerase III subunit RPC1	AT5G60040.1	nuclear RNA polymerase C1 	LOC_Os04g41490.1	"DNA-directed RNA polymerase III subunit RPC1, putative, expressed"	Medtr4g079650.1	"RNA polymerase, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.20098.1.A1_s_at	A	A1TS	POPTR_0002s08400	POPTR_0002s08400 (11)	scaffold_2:5847154-5847776(-) (11)	NA	Q8LLE5	Filament-like plant protein (Fragment)	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os11g06910.2	"myosin heavy chain-related, putative, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200980.1.S1_at	A	A1TS	POPTR_0001s35720	POPTR_0001s35720 (10)	scaffold_1:34066473-34066856(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200981.1.S1_at	A	A1TS	POPTR_0001s35730	POPTR_0001s35730 (10)	scaffold_1:34070372-34070928(-) (10)	NA	Q7M443	Chitinase 2	NA	NA	LOC_Os10g28120.1	"glycosyl hydrolase, putative, expressed"	Medtr6g089840.1	"Glycoside hydrolase, chitinase active site; Ribosomal protein S2 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200982.1.S1_at	A	A1TS	POPTR_0001s35780	POPTR_0001s35780 (11)	scaffold_1:34128417-34129278(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200984.1.S1_at	A	A1TS	POPTR_0001s35810	POPTR_0001s35810 (11)	scaffold_1:34157743-34159379(-) (11)	NA	Q6F4F5	Cytochrome P450 724B1	AT5G14400.1	"cytochrome P450, family 724, subfamily A, polypeptide 1 "	LOC_Os04g39430.1	"cytochrome P450, putative, expressed"	Medtr7g032660.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.200985.1.S1_at	A	A1TS	POPTR_0001s35820	POPTR_0001s35820 (11)	scaffold_1:34185116-34185387(+) (11)	NA	NA	NA	AT3G01660.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g40530.1	"methyltransferase domain containing protein, expressed"	Medtr7g032510.1	Methyltransferase type 12 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.200986.1.S1_at	A	A1TS	POPTR_0001s35840	POPTR_0001s35840 (11)	scaffold_1:34197081-34197423(+) (11)	NA	P29136	Metalloendoproteinase 1	AT1G59970.1	Matrixin family protein 	LOC_Os06g13180.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g037460.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200987.1.S1_s_at	A	A1TS	POPTR_0001s35840	POPTR_0001s35840 (11)	scaffold_1:34197447-34197871(+) (11)	NA	P29136	Metalloendoproteinase 1	AT1G59970.1	Matrixin family protein 	LOC_Os06g13180.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g037460.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200988.1.S1_at	A	A1TS	POPTR_0001s35920	POPTR_0001s35920 (11)	scaffold_1:34380595-34382734(+) (11)	NA	Q5ZJ01	Abhydrolase domain-containing protein FAM108B1	AT5G14390.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g18860.1	"OsPOP23 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g032300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200989.1.S1_at	A	A1TS	POPTR_0001s35940	POPTR_0001s35940 (10)	scaffold_1:34407412-34407843(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200990.1.S1_at	A	A1MS	POPTR_0001s35950	POPTR_0001s35950 (11)	scaffold_1:34415892-34416117(+) (11)	NA	P55861	DNA replication licensing factor mcm2	AT1G44900.2	minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os11g29380.1	"MCM2 - Putative minichromosome maintenance MCM complex subunit 2, expressed"	Medtr8g137340.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.200990.1.S1_x_at	A	A1MS	POPTR_0001s35950	POPTR_0001s35950 (11)	scaffold_1:34415892-34416117(+) (11)	NA	P55861	DNA replication licensing factor mcm2	AT1G44900.2	minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os11g29380.1	"MCM2 - Putative minichromosome maintenance MCM complex subunit 2, expressed"	Medtr8g137340.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.200991.1.S1_at	A	A1MS	POPTR_0001s35950	POPTR_0001s35950 (11)	scaffold_1:34416304-34416842(+) (11)	NA	P55861	DNA replication licensing factor mcm2	AT1G44900.2	minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os11g29380.1	"MCM2 - Putative minichromosome maintenance MCM complex subunit 2, expressed"	Medtr8g137340.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.200992.1.S1_s_at	A	A1TS	POPTR_0001s35960	POPTR_0001s35960 (11)	scaffold_1:34419255-34420094(-) (11)	NA	O24554	Pectate lyase	AT3G27400.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200993.1.S1_at	A	A1TS	POPTR_0001s35980	POPTR_0001s35980 (11)	scaffold_1:34439712-34439768(+) (11)	NA	NA	NA	AT5G14370.1	CCT motif family protein 	NA	NA	Medtr7g032090.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200993.1.S1_s_at	A	A1TS	POPTR_0001s35980	POPTR_0001s35980 (11)	scaffold_1:34439206-34439710(+) (11)	NA	NA	NA	AT5G14370.1	CCT motif family protein 	NA	NA	Medtr7g032090.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200994.1.S1_at	A	A1TS	POPTR_0001s36000	POPTR_0001s36000 (11)	scaffold_1:34459565-34460175(-) (11)	NA	NA	NA	AT5G14360.1	Ubiquitin-like superfamily protein 	LOC_Os01g67950.1	"ubiquitin family protein, putative, expressed"	Medtr6g022440.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200996.1.S1_at	A	A1TS	POPTR_0001s36040	POPTR_0001s36040 (11)	scaffold_1:34520525-34520713(-) (11)	NA	NA	NA	AT5G55850.3	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os06g17870.1	"nitrate-induced NOI protein, putative"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200998.1.S1_at	A	A1TS	POPTR_0001s36090	POPTR_0001s36090 (11)	scaffold_1:34557681-34558985(-) (11)	NA	NA	NA	AT3G27325.2	"hydrolases, acting on ester bonds "	LOC_Os09g09360.1	"esterase/lipase/thioesterase, putative, expressed"	Medtr7g037530.1	PGAP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200999.1.S1_at	A	A1TS	POPTR_0001s36100	POPTR_0001s36100 (11)	scaffold_1:34569596-34570532(-) (11)	NA	Q2USI0	GPI inositol-deacylase	AT3G27325.2	"hydrolases, acting on ester bonds "	LOC_Os09g09360.1	"esterase/lipase/thioesterase, putative, expressed"	Medtr7g037550.1	PGAP1-like 	GO:0006886|intracellular protein transport||GO:0006505|GPI anchor metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.201000.1.S1_at	A	A1TS	POPTR_0001s36110	POPTR_0001s36110 (11)	scaffold_1:34592149-34592210(-) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G02645.1	Plant protein of unknown function (DUF247) 	LOC_Os06g08120.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g015670.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201000.1.S1_s_at	A	A2TS	POPTR_0001s36110	POPTR_0001s36120 (11)//POPTR_0001s36110 (11)	scaffold_1:34592127-34592694(-) (11)//scaffold_1:34613071-34613638(-) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G02645.1	Plant protein of unknown function (DUF247) 	LOC_Os06g08120.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g015670.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201001.1.S1_at	A	A1TS	POPTR_0001s36120	POPTR_0001s36120 (11)	scaffold_1:34613093-34613134(-) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G02645.1	Plant protein of unknown function (DUF247) 	LOC_Os06g08120.1	"plant protein of unknown function domain containing protein, expressed"	Medtr4g006270.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201003.1.S1_at	A	A1TS	POPTR_0001s36170	POPTR_0001s36170 (11)	scaffold_1:34684466-34684839(+) (11)	NA	Q9LU91	F-box protein SKIP14	AT3G26000.1	Ribonuclease inhibitor 	LOC_Os04g40910.1	"OsFBX146 - F-box domain containing protein, expressed"	Medtr4g157480.1	"4Fe-4S ferredoxin, iron-sulfur binding; Cyclin-like F-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201004.1.S1_at	A	A1TS	POPTR_0001s36180	POPTR_0001s36180 (11)	scaffold_1:34690405-34691172(-) (11)	NA	Q9FNJ5	F-box/FBD/LRR-repeat protein At5g22660	AT5G22660.2	"FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein "	LOC_Os10g03870.1	"OsFBX353 - F-box domain containing protein, expressed"	Medtr8g018890.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201005.1.S1_at	A	A1TS	POPTR_0001s36190	POPTR_0001s36190 (11)	scaffold_1:34703463-34704103(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g016860.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.201006.1.S1_at	A	A1TS	POPTR_0001s36210	POPTR_0001s36210 (11)	scaffold_1:34718229-34719236(-) (11)	NA	NA	NA	AT3G27330.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os08g02850.1	"zinc finger family protein, putative, expressed"	Medtr2g034480.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201007.1.S1_at	A	A1TS	POPTR_0001s36220	POPTR_0001s36220 (9)	scaffold_1:34754595-34755658(+) (10)	NA	P81394	Myb-related protein 315	AT5G14340.1	myb domain protein 40 	LOC_Os09g23620.1	"MYB family transcription factor, putative, expressed"	Medtr5g085860.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201008.1.S1_at	A	A1TS	POPTR_0001s36240	POPTR_0001s36240 (11)	scaffold_1:34774023-34776037(-) (11)	NA	NA	NA	AT5G40710.1	zinc finger (C2H2 type) family protein 	LOC_Os12g13130.4	"ZOS12-03 - C2H2 zinc finger protein, expressed"	Medtr8g109960.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201010.1.S1_at	A	A1TS	POPTR_0001s36280	POPTR_0001s36280 (11)	scaffold_1:34835201-34835850(+) (11)	NA	Q9LMA1	Probable flavin-containing monooxygenase 1	AT1G19250.1	flavin-dependent monooxygenase 1 	LOC_Os03g08410.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr8g132980.1	"Amine oxidase; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201011.1.S1_at	A	A1TS	POPTR_0001s36290	POPTR_0001s36290 (11)	scaffold_1:34842244-34843007(+) (11)	NA	P25861	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT3G04120.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.201012.1.S1_at	A	A1MS	POPTR_0001s36310	POPTR_0001s36310 (11)	scaffold_1:34857967-34858146(+) (11)	NA	NA	NA	AT5G14290.1	Mitochondrial ribosomal protein L37 	LOC_Os12g14080.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201012.1.S1_s_at	A	A1TS	POPTR_0001s36310	POPTR_0001s36310 (11)	scaffold_1:34858144-34858478(+) (11)	NA	NA	NA	AT5G14290.1	Mitochondrial ribosomal protein L37 	LOC_Os12g14080.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201013.1.S1_at	A	A1TS	POPTR_0001s36330	POPTR_0001s36330 (11)	scaffold_1:34893045-34893211(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.1	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201014.1.S1_at	A	A1TS	POPTR_0001s36340	POPTR_0001s36340 (11)	scaffold_1:34898252-34899139(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.2	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201015.1.S1_at	A	A1TS	POPTR_0001s36350	POPTR_0001s36350 (11)	scaffold_1:34902304-34902686(-) (11)	NA	NA	NA	AT5G14280.1	DNA-binding storekeeper protein-related 	LOC_Os05g23700.1	"DNA-binding storekeeper protein-related, putative, expressed"	Medtr4g136680.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.201016.1.S1_at	A	A1TS	POPTR_0001s36360	POPTR_0001s36360 (11)	scaffold_1:34905357-34906156(-) (11)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT5G14270.1	bromodomain and extraterminal domain protein 9 	LOC_Os02g38980.1	"bromodomain domain containing protein, expressed"	Medtr4g121770.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201017.1.S1_at	A	A1TS	POPTR_0001s34240	POPTR_0001s34240 (11)	scaffold_1:32377604-32378939(+) (11)	NA	Q9LK31	Kelch repeat-containing protein At3g27220	AT3G27220.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g41020.1	"kelch repeat protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201018.1.S1_at	A	A1TS	POPTR_0001s34230	POPTR_0001s34230 (11)	scaffold_1:32366647-32367180(+) (11)	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26980.1	"cytochrome P450, putative, expressed"	Medtr6g009150.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.201019.1.S1_at	A	A1MS	POPTR_0001s34230	POPTR_0001s34230 (11)	scaffold_1:32366236-32366270(+) (11)	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26980.1	"cytochrome P450, putative, expressed"	Medtr6g009150.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.201019.1.S1_s_at	A	A1TS	POPTR_0001s34230	POPTR_0001s34230 (11)	scaffold_1:32365682-32366227(+) (11)	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26980.1	"cytochrome P450, putative, expressed"	Medtr6g009150.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.201020.1.S1_at	A	A1TS	POPTR_0001s34210	POPTR_0001s34210 (11)	scaffold_1:32342235-32342793(-) (11)	NA	NA	NA	AT3G27250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40800.1); Has 104 Blast hits to 104 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g13910.1	expressed protein	Medtr6g025020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201021.1.S1_at	A	A1TS	POPTR_0001s34200	POPTR_0001s34200 (10)	scaffold_1:32325086-32325671(-) (11)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67530.1	"AMP-binding enzyme, putative, expressed"	Medtr3g117330.1	AMP-dependent synthetase and ligase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201022.1.S1_at	A	A1TS	POPTR_0001s34190	POPTR_0001s34190 (11)	scaffold_1:32320521-32321013(-) (11)	NA	NA	NA	AT3G01780.1	ARM repeat superfamily protein 	LOC_Os02g55010.1	expressed protein	Medtr8g142250.1	Calcium-binding EF-hand; Heme-binding A 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201023.1.S1_at	A	A1TS	POPTR_0001s34190	POPTR_0001s34190 (11)	scaffold_1:32317906-32318188(-) (11)	NA	NA	NA	AT3G01780.1	ARM repeat superfamily protein 	LOC_Os02g55010.1	expressed protein	Medtr8g142250.1	Calcium-binding EF-hand; Heme-binding A 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201026.1.S1_at	A	A1TS	POPTR_0001s34120	POPTR_0001s34120 (10)	scaffold_1:32267676-32268035(+) (11)	NA	Q12955	Ankyrin-3	AT5G14230.1	"CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). "	LOC_Os04g41280.1	"ankyrin repeat domain containing protein, expressed"	Medtr8g142200.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201027.1.S1_at	A	A1MS	POPTR_0001s34120	POPTR_0001s34120 (10)	scaffold_1:32262789-32263064(+) (10)	NA	Q12955	Ankyrin-3	AT5G14230.1	"CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). "	LOC_Os04g41280.1	"ankyrin repeat domain containing protein, expressed"	Medtr8g142200.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201028.1.S1_at	A	A1TS	POPTR_0001s34110	POPTR_0001s34110 (9)	scaffold_1:32243788-32244650(-) (9)	NA	Q94IG7	"Protoporphyrinogen oxidase, chloroplastic/mitochondrial"	AT5G14220.1	Flavin containing amine oxidoreductase family 	LOC_Os04g41260.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr8g142180.1	Protoporphyrinogen oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.201028.1.S1_s_at	A	A1TS	POPTR_0001s34110	POPTR_0001s34110 (11)	scaffold_1:32244387-32245874(-) (11)	NA	Q94IG7	"Protoporphyrinogen oxidase, chloroplastic/mitochondrial"	AT5G14220.1	Flavin containing amine oxidoreductase family 	LOC_Os04g41260.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr8g142180.1	Protoporphyrinogen oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.201029.1.S1_at	A	A1TS	POPTR_0001s34100	POPTR_0001s34100 (11)	scaffold_1:32237181-32238450(-) (11)	NA	P20735	Gamma-glutamyltranspeptidase 1	AT4G39640.2	gamma-glutamyl transpeptidase 1 	LOC_Os04g38450.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr3g100890.1	Gamma-glutamyltranspeptidase 	NA	GO:0003840|gamma-glutamyltransferase activity	NA
PtpAffx.201030.1.S1_s_at	A	A1TS	POPTR_0001s34090	POPTR_0001s34090 (11)	scaffold_1:32227199-32228018(-) (11)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT5G14210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g20360.2	expressed protein	Medtr8g142280.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.201031.1.S1_at	A	A1TS	POPTR_0001s34020	POPTR_0001s34020 (11)	scaffold_1:32166769-32167280(+) (11)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT3G01840.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g093120.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201033.1.S1_at	A	A1TS	POPTR_0001s33940	POPTR_0001s33940 (10)	scaffold_1:32100893-32101824(-) (11)	NA	Q6M9M7	Uncharacterized RNA methyltransferase pc1998	AT3G27180.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g69120.1	"uncharacterized RNA methyltransferase pc1998, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201034.1.S1_at	A	A1TS	POPTR_0001s33920	POPTR_0001s33920 (11)	scaffold_1:32085992-32086215(+) (11)	NA	P92942	Chloride channel protein CLC-b	AT3G27170.1	chloride channel B 	LOC_Os12g25200.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr6g025600.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.201036.1.S1_at	A	A1TS	POPTR_0001s33880	POPTR_0001s33880 (11)	scaffold_1:32034804-32036031(-) (11)	NA	Q6DDU8	Fidgetin-like protein 1	AT3G27120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g03940.1	"spastin, putative, expressed"	Medtr5g009960.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.201037.1.S1_at	A	A1TS	POPTR_0001s33870	POPTR_0001s33870 (11)	scaffold_1:32025273-32026613(-) (11)	NA	Q6PIW4	Fidgetin-like protein 1	AT3G27120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g03940.1	"spastin, putative, expressed"	Medtr4g165730.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.201038.1.S1_at	A	A1TS	POPTR_0001s33870	POPTR_0001s33870 (11)	scaffold_1:32022354-32023976(-) (11)	NA	Q6PIW4	Fidgetin-like protein 1	AT3G27120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g03940.1	"spastin, putative, expressed"	Medtr4g165730.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.201039.1.S1_at	A	A1TS	POPTR_0001s33860	POPTR_0001s33860 (11)	scaffold_1:32020881-32021427(+) (11)	NA	O81117	Cytochrome P450 94A1	AT3G01900.1	"cytochrome P450, family 94, subfamily B, polypeptide 2 "	LOC_Os11g29290.1	"cytochrome P450, putative, expressed"	Medtr3g109650.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.201040.1.S1_s_at	A	A1TS	POPTR_1814s00200	POPTR_1814s00200 (11)	scaffold_1814:3019-3056(+) (11)	NA	Q09X22	Photosystem II D2 protein	ATCG00270.1	photosystem II reaction center protein D 	LOC_Os02g24634.1	"photosystem II D2 protein, putative"	Medtr4g098620.1	Photosynthetic reaction centre protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201041.1.S1_at	A	A1MS	POPTR_0001s33830	POPTR_0001s33830 (11)	scaffold_1:31985114-31985199(-) (11)	NA	NA	NA	AT2G35270.1	Predicted AT-hook DNA-binding family protein 	LOC_Os04g50030.1	"DNA binding protein, putative, expressed"	Medtr7g092530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201044.1.S1_at	A	A1TS	POPTR_0001s33760	POPTR_0001s33760 (11)	scaffold_1:31916696-31917266(-) (11)	NA	NA	NA	AT3G48200.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os05g51620.1	expressed protein	Medtr3g114240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201045.1.S1_at	A	A1TS	POPTR_0001s33740	POPTR_0001s33740 (11)	scaffold_1:31907525-31908071(+) (11)	NA	NA	NA	AT5G55690.1	MADS-box transcription factor family protein 	NA	NA	Medtr6g005370.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.201046.1.S1_at	A	A1TS	POPTR_0001s33670	POPTR_0001s33670 (11)	scaffold_1:31877157-31877537(+) (11)	NA	NA	NA	AT3G01930.2	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201049.1.S1_s_at	A	A1TS	POPTR_0001s33600	POPTR_0001s33600 (11)	scaffold_1:31831359-31831498(+) (11)	NA	Q9FVC1	MADS-box protein SVP	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os09g32948.1	"OsMADS8 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g049120.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.20105.1.S1_at	A	A1TS	POPTR_0001s37930	POPTR_0001s37930 (9)	scaffold_1:37011946-37012343(+) (9)	NA	Q6NUB2	Protein CWC15 homolog A	AT3G13200.1	Cwf15 / Cwc15 cell cycle control family protein 	LOC_Os06g01700.1	"CWC15 homolog A, putative, expressed"	Medtr8g105800.1	Cwf15/Cwc15 cell cycle control protein 	"GO:0044260|cellular macromolecule metabolic process||GO:0000398|""nuclear mRNA splicing, via spliceosome"""	NA	GO:0005681|spliceosomal complex
PtpAffx.201050.1.S1_at	A	A1TS	POPTR_0001s33580	POPTR_0001s33580 (11)	scaffold_1:31798494-31799070(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201051.1.S1_at	A	A1TS	POPTR_0001s33520	POPTR_0001s33520 (11)	scaffold_1:31706875-31709115(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g29850.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g018480.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201052.1.S1_at	A	A1TS	POPTR_0001s33510	POPTR_0001s33510 (11)	scaffold_1:31703009-31704157(+) (11)	NA	NA	NA	AT5G14090.1	unknown protein; Has 56 Blast hits to 56 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	NA	NA	Medtr7g018460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201054.1.S1_at	A	A1MS	POPTR_0001s33470	POPTR_0001s33470 (11)	scaffold_1:31675148-31675263(-) (11)	NA	Q9LSD5	Transcription factor TCP20	AT3G27010.1	"TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 "	LOC_Os01g69980.1	"TCP family transcription factor, putative, expressed"	Medtr7g018180.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201055.1.S1_at	A	A1TS	POPTR_0001s33450	POPTR_0001s33450 (11)	scaffold_1:31651928-31651971(-) (11)	NA	Q9FMU2	Pentatricopeptide repeat-containing protein At5g14080	AT5G14080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g56960.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g007390.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201055.1.S1_s_at	A	A1TS	POPTR_0001s33450	POPTR_0001s33450 (11)	scaffold_1:31652086-31652586(-) (11)	NA	Q9FMU2	Pentatricopeptide repeat-containing protein At5g14080	AT5G14080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g56960.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g007390.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201056.1.S1_s_at	A	A1TS	POPTR_0001s33410	POPTR_0001s33410 (11)	scaffold_1:31600671-31601199(+) (11)	NA	NA	NA	AT1G27430.1	GYF domain-containing protein 	LOC_Os01g69990.1	"GYF domain containing protein, putative, expressed"	Medtr7g017760.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201057.1.S1_at	A	A2MS	POPTR_0001s33410	POPTR_0001s33410 (11)//POPTR_0001s33430 (10)	scaffold_1:31594175-31594221(+) (11)//scaffold_1:31629641-31629685(+) (10)	NA	NA	NA	AT1G27430.1	GYF domain-containing protein 	LOC_Os01g69990.1	"GYF domain containing protein, putative, expressed"	Medtr7g017760.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201057.1.S1_s_at	A	A1TS	POPTR_0001s33410	POPTR_0001s33410 (11)	scaffold_1:31593600-31594156(+) (11)	POPTR_0001s33430 (7)	NA	NA	AT1G27430.1	GYF domain-containing protein 	LOC_Os01g69990.1	"GYF domain containing protein, putative, expressed"	Medtr7g017760.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201058.1.S1_at	A	A1TS	POPTR_0001s33370	POPTR_0001s33370 (11)	scaffold_1:31553301-31553806(-) (11)	NA	NA	NA	AT4G23882.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr2g022340.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.201059.1.S1_at	A	A1TS	POPTR_0001s33360	POPTR_0001s33360 (11)	scaffold_1:31548105-31548961(-) (11)	NA	Q8S4W7	DELLA protein GAI1	AT1G66350.1	RGA-like 1 	LOC_Os11g31100.1	"gibberellin response modulator protein, putative"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201060.1.S1_at	A	A1TS	POPTR_0001s33360	POPTR_0001s33360 (11)	scaffold_1:31547027-31547595(-) (11)	NA	Q8S4W7	DELLA protein GAI1	AT1G66350.1	RGA-like 1 	LOC_Os11g31100.1	"gibberellin response modulator protein, putative"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201061.1.S1_at	A	A1TS	POPTR_0001s33320	POPTR_0001s33320 (11)	scaffold_1:31509985-31510485(+) (11)	NA	O54922	Exocyst complex component 7	AT5G13990.1	exocyst subunit exo70 family protein C2 	LOC_Os11g06700.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr7g027250.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.201062.1.S1_at	A	A1TS	POPTR_0001s33280	POPTR_0001s33280 (11)	scaffold_1:31474113-31474674(-) (11)	NA	NA	NA	AT5G41070.1	dsRNA-binding protein 5 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.201063.1.S1_at	A	A1TS	POPTR_0001s33240	POPTR_0001s33240 (11)	scaffold_1:31443469-31444416(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201064.1.S1_at	A	A1TS	POPTR_0001s33210	POPTR_0001s33210 (11)	scaffold_1:31405644-31406093(-) (11)	NA	Q9FFX4	Zinc finger protein KNUCKLES	AT5G14010.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os07g40300.1	"ZOS7-10 - C2H2 zinc finger protein, expressed"	Medtr3g087170.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.201065.1.S1_at	A	A1TS	POPTR_0001s33190	POPTR_0001s33190 (11)	scaffold_1:31387059-31389091(+) (11)	NA	Q9LW26	"Acyltransferase-like protein At3g26840, chloroplastic"	AT5G41130.1	Esterase/lipase/thioesterase family protein 	LOC_Os09g33530.1	expressed protein	Medtr7g094360.1	"catalytic, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201066.1.S1_at	A	A1TS	POPTR_0001s33140	POPTR_0001s33140 (11)	scaffold_1:31357334-31357784(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201067.1.S1_at	A	A1TS	POPTR_0001s33130	POPTR_0001s33130 (11)	scaffold_1:31355784-31356991(+) (11)	NA	Q9LW26	"Acyltransferase-like protein At3g26840, chloroplastic"	AT5G41130.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g094360.1	"catalytic, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201068.1.S1_at	A	A1TS	POPTR_0001s33120	POPTR_0001s33120 (11)	scaffold_1:31347912-31348570(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201069.1.S1_at	A	A1TS	POPTR_0001s33100	POPTR_0001s33100 (11)	scaffold_1:31329178-31330665(-) (11)	NA	B9RH17	UPF0497 membrane protein 13	AT4G15620.1	Uncharacterised protein family (UPF0497) 	LOC_Os02g12760.1	"integral membrane protein, putative, expressed"	Medtr7g094340.2	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201071.1.S1_at	A	A1TS	POPTR_0001s33080	POPTR_0001s33080 (10)	scaffold_1:31317937-31319555(+) (10)	NA	O22800	Zinc finger protein CONSTANS-LIKE 14	AT2G33500.2	B-box type zinc finger protein with CCT domain 	LOC_Os08g42440.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g096570.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.201072.1.S1_at	A	A1TS	POPTR_0001s33020	POPTR_0001s33020 (11)	scaffold_1:31257329-31257870(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201073.1.S1_at	A	A1TS	POPTR_0001s33010	POPTR_0001s33010 (11)	scaffold_1:31253547-31255327(+) (11)	NA	Q9LYZ2	Putative F-box/LRR-repeat protein At5g02930	AT5G02930.1	F-box/RNI-like superfamily protein 	LOC_Os08g05460.1	OsFBL40 - F-box domain and LRR containing protein	Medtr1g025900.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201074.1.S1_at	A	A1TS	POPTR_0001s33000	POPTR_0001s33000 (11)	scaffold_1:31240162-31240569(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201075.1.S1_at	A	A1TS	POPTR_0001s32980	POPTR_0001s32980 (11)	scaffold_1:31230454-31230978(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT5G08139.1	RING/U-box superfamily protein 	LOC_Os10g34590.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g080710.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201076.1.S1_a_at	A	A1TS	POPTR_0001s32960	POPTR_0001s32960 (11)	scaffold_1:31221915-31222207(-) (11)//scaffold_1:31222152-31222313(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201078.1.S1_at	A	A1TS	POPTR_0001s32940	POPTR_0001s32940 (11)	scaffold_1:31210474-31210974(-) (11)	NA	NA	NA	AT3G22790.1	Kinase interacting (KIP1-like) family protein 	LOC_Os10g28610.1	"KIP1, putative, expressed"	Medtr7g096830.1	KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201079.1.S1_at	A	A1TS	POPTR_0001s32930	POPTR_0001s32930 (11)	scaffold_1:31209147-31209614(+) (11)	NA	Q9LW32	"Pentatricopeptide repeat-containing protein At3g26782, mitochondrial"	AT3G26782.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g20420.1	"tetratricopeptide-like helical, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201080.1.S1_at	A	A1TS	POPTR_0001s32910	POPTR_0001s32910 (11)	scaffold_1:31193383-31194472(-) (11)	NA	Q06915	"Probable glucan endo-1,3-beta-glucosidase A6"	AT3G23770.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os09g32550.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g012760.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.201081.1.S1_at	A	A1TS	POPTR_0001s32890	POPTR_0001s32890 (11)	scaffold_1:31160465-31161015(-) (11)	NA	O23266	"Pentatricopeptide repeat-containing protein At4g14050, mitochondrial"	AT4G14050.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g43934.2	"pentatricopeptide, putative, expressed"	Medtr3g104680.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201082.1.S1_s_at	A	A1TS	POPTR_0001s32870	POPTR_0001s32870 (11)	scaffold_1:31143411-31143723(-) (11)	NA	NA	NA	AT4G14010.1	ralf-like 32 	NA	NA	Medtr4g132720.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201084.1.S1_at	A	A1TS	POPTR_0001s32690	POPTR_0001s32690 (11)	scaffold_1:30972306-30972706(-) (11)	NA	NA	NA	AT5G43490.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g63040.1	expressed protein	Medtr4g132590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201085.1.S1_at	A	A1TS	POPTR_0001s32660	POPTR_0001s32660 (11)	scaffold_1:30937747-30938356(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT4G13840.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g52164.1	"transferase family protein, putative, expressed"	Medtr2g041620.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201086.1.S1_at	A	A1TS	POPTR_0001s32620	POPTR_0001s32620 (9)	scaffold_1:30891531-30893803(-) (11)	NA	O75691	Small subunit processome component 20 homolog	AT4G30990.1	ARM repeat superfamily protein 	LOC_Os01g40250.1	"down-regulated in metastasis family protein, expressed"	Medtr3g105260.1	Down-regulated in metastasis 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201087.1.S1_at	A	A1TS	POPTR_0001s32610	POPTR_0001s32610 (11)	scaffold_1:30885625-30886735(-) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT1G71900.1	Protein of unknown function (DUF803) 	LOC_Os01g65986.1	"DUF803 domain containing, putative, expressed"	Medtr3g105270.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.201088.1.S1_at	A	A1TS	POPTR_0001s32600	POPTR_0001s32600 (11)	scaffold_1:30882044-30882495(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g133460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201089.1.S1_at	A	A1TS	POPTR_0001s32590	POPTR_0001s32590 (11)	scaffold_1:30877519-30878067(+) (11)	NA	Q8GYF4	Probable inorganic phosphate transporter 1-5	AT2G32830.1	phosphate transporter 1;5 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.201090.1.S1_at	A	A1TS	POPTR_0001s32580	POPTR_0001s32580 (11)	scaffold_1:30873412-30873941(+) (11)	NA	Q8GXC7	F-box/kelch-repeat protein At3g06240	AT3G06240.1	F-box family protein 	LOC_Os12g06740.2	"OsFBX440 - F-box domain containing protein, expressed"	Medtr3g006070.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201091.1.S1_at	A	A1MS	POPTR_0001s32570	POPTR_0001s32570 (11)	scaffold_1:30870347-30870946(+) (11)	NA	Q8GXC7	F-box/kelch-repeat protein At3g06240	AT3G06240.1	F-box family protein 	LOC_Os12g06740.2	"OsFBX440 - F-box domain containing protein, expressed"	Medtr4g024310.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201092.1.S1_at	A	A1TS	POPTR_0001s32550	POPTR_0001s32550 (9)	scaffold_1:30864425-30866634(+) (11)	NA	NA	NA	AT3G42860.1	zinc knuckle (CCHC-type) family protein 	LOC_Os03g57260.1	"GRF zinc finger family protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.201093.1.S1_at	A	A1TS	POPTR_0001s32520	POPTR_0001s32520 (10)	scaffold_1:30834076-30834725(+) (10)	NA	NA	NA	NA	NA	LOC_Os03g08740.2	expressed protein	Medtr5g017760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201094.1.S1_at	A	A1TS	POPTR_0001s32510	POPTR_0001s32510 (11)	scaffold_1:30830518-30831503(+) (11)	NA	A5PK19	Methyltransferase-like protein 13	AT2G31740.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g31000.1	"methyltransferase domain containing protein, expressed"	Medtr4g133500.1	"Putative methyltransferase KIAA0859 homolog, "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.201095.1.S1_at	A	A1TS	POPTR_0001s32480	POPTR_0001s32480 (11)	scaffold_1:30800517-30802349(-) (11)	NA	Q9D099	Alkaline ceramidase 3	AT4G22330.1	Alkaline phytoceramidase (aPHC) 	LOC_Os03g49180.1	"alkaline phytoceramidase, putative, expressed"	Medtr2g029600.1	Alkaline phytoceramidase 	GO:0006672|ceramide metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0000139|Golgi membrane||GO:0071212|subsynaptic reticulum
PtpAffx.201096.1.S1_at	A	A1TS	POPTR_0001s32460	POPTR_0001s32460 (10)	scaffold_1:30782754-30784134(+) (11)	NA	NA	NA	AT4G13750.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os03g58910.2	expressed protein	Medtr4g133560.1	"ATP-binding region, ATPase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201097.1.S1_at	A	A1TS	POPTR_0001s32430	POPTR_0001s32430 (10)	scaffold_1:30767088-30767627(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201098.1.S1_at	A	A1TS	POPTR_0001s32410	POPTR_0001s32410 (11)	scaffold_1:30754665-30755589(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201100.1.S1_at	A	A1TS	POPTR_0001s32380	POPTR_0001s32380 (11)	scaffold_1:30747076-30747582(+) (11)	NA	Q9MAT2	Pentatricopeptide repeat-containing protein At1g04840	AT1G04840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g27880.1	"tetratricopeptide-like helical, putative"	Medtr8g119600.1	Pancreatic ribonuclease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201101.1.S1_at	A	A1TS	POPTR_0001s32360	POPTR_0001s32360 (10)	scaffold_1:30717522-30718051(-) (10)	NA	Q9SRH9	Paired amphipathic helix protein Sin3-like 1	AT3G01320.2	SIN3-like 1 	LOC_Os05g01020.2	"transcriptional repressor, putative, expressed"	Medtr6g009630.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.201102.1.S1_at	A	A1TS	POPTR_0001s32350	POPTR_0001s32350 (11)	scaffold_1:30714760-30715172(-) (11)	NA	Q9SRH9	Paired amphipathic helix protein Sin3-like 1	AT3G01320.2	SIN3-like 1 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr6g009610.1	"Paired amphipathic helix protein Sin3, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.201103.1.S1_at	A	A1TS	POPTR_0001s32330	POPTR_0001s32330 (10)	scaffold_1:30703679-30705418(-) (10)	NA	NA	NA	AT2G04235.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 713 Blast hits to 345 proteins in 122 species: Archae - 2; Bacteria - 262; Metazoa - 138; Fungi - 55; Plants - 39; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). 	LOC_Os06g40590.1	expressed protein	Medtr3g106760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201104.1.S1_at	A	A1TS	POPTR_0001s32320	POPTR_0001s32320 (11)	scaffold_1:30699734-30701413(-) (11)	NA	NA	NA	AT2G04235.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 713 Blast hits to 345 proteins in 122 species: Archae - 2; Bacteria - 262; Metazoa - 138; Fungi - 55; Plants - 39; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). 	LOC_Os06g40590.1	expressed protein	Medtr3g106740.1	"184, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201106.1.S1_at	A	A1TS	POPTR_0001s32280	POPTR_0001s32280 (11)	scaffold_1:30676549-30677613(+) (11)	NA	Q8W4N3	Ubiquitin carboxyl-terminal hydrolase 2	AT1G04860.1	ubiquitin-specific protease 2 	LOC_Os09g32740.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr3g105630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.201107.1.S1_at	A	A1TS	POPTR_0001s32270	POPTR_0001s32270 (11)	scaffold_1:30669187-30669349(-) (11)	NA	P47926	Protein RSI-1	AT2G30810.1	Gibberellin-regulated family protein 	LOC_Os10g02625.1	"gibberellin regulated protein, putative"	Medtr5g037790.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201108.1.S1_at	A	A1TS	POPTR_0001s32250	POPTR_0001s32250 (11)	scaffold_1:30650147-30650628(-) (11)	NA	Q9SVQ0	Ethylene-responsive transcription factor ERF062	AT4G13620.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g09170.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr1g111860.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.201109.1.S1_at	A	A1MS	POPTR_0001s32240	POPTR_0001s32240 (9)	scaffold_1:30641508-30642128(+) (9)	NA	Q9MAT6	High mobility group B protein 15	AT1G04880.1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain 	LOC_Os02g27060.2	"high mobility group, putative, expressed"	Medtr1g146490.1	HMG1/2 (high mobility group) box; AT-rich interaction region 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.201110.1.S1_at	A	A1TS	POPTR_0001s32220	POPTR_0001s32220 (11)	scaffold_1:30623308-30623623(-) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT2G32800.1	protein kinase family protein 	LOC_Os11g25860.1	"protein Kinase, putative, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201111.1.S1_at	A	A1TS	POPTR_0001s32210	POPTR_0001s32210 (11)	scaffold_1:30621661-30622322(+) (11)	NA	Q9LRN6	Probable calcium-binding protein CML22	AT3G24110.1	Calcium-binding EF-hand family protein 	LOC_Os05g05460.1	"EF hand family protein, putative, expressed"	Medtr8g083980.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201112.1.S1_at	A	A1MS	POPTR_0001s32180	POPTR_0001s32180 (9)	scaffold_1:30589380-30590276(+) (9)	NA	Q4PSN0	Probable pectinesterase 29	AT3G24130.1	Pectin lyase-like superfamily protein 	LOC_Os01g19440.1	"pectinesterase, putative"	Medtr6g036510.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201113.1.S1_at	A	A1TS	POPTR_0001s32160	POPTR_0001s32160 (11)	scaffold_1:30569683-30570354(+) (11)	NA	Q56YJ8	Transcription factor FAMA	AT3G24140.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g50900.1	"helix-loop-helix DNA-binding protein, putative"	Medtr3g150170.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.201114.1.S1_at	A	A1TS	POPTR_0001s32080	POPTR_0001s32080 (11)	scaffold_1:30500022-30500234(+) (11)	NA	NA	NA	AT3G55570.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g15860.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201115.1.S1_at	A	A1TS	POPTR_0001s32050	POPTR_0001s32050 (11)	scaffold_1:30485543-30486092(+) (11)	NA	Q9M8M5	Ethylene-responsive transcription factor ERF084	AT1G80580.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32790.1	"AP2 domain containing protein, expressed"	Medtr4g006420.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.201116.1.S1_at	A	A1TS	POPTR_0001s32040	POPTR_0001s32040 (10)	scaffold_1:30470953-30471241(+) (11)	NA	NA	NA	AT5G52390.1	PAR1 protein 	NA	NA	Medtr4g015430.1	PAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201118.1.S1_at	A	A1TS	POPTR_0001s32010	POPTR_0001s32010 (11)	scaffold_1:30451491-30452333(-) (11)	NA	P0A573	Uncharacterized protein Mb2734	AT5G09430.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g42994.1	"hydrolase, putative, expressed"	Medtr3g101880.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201119.1.S1_at	A	A1TS	POPTR_0001s31990	POPTR_0001s31990 (11)	scaffold_1:30429615-30430172(+) (11)	NA	NA	NA	AT1G22310.2	methyl-CPG-binding domain 8 	LOC_Os08g37920.2	"ZOS8-09 - C2H2 zinc finger protein, expressed"	Medtr2g009110.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.201120.1.S1_at	A	A1TS	POPTR_0001s31970	POPTR_0001s31970 (11)	scaffold_1:30404407-30404937(+) (11)	NA	Q56Y11	Dehydrodolichyl diphosphate synthase 2	AT5G58770.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os01g63830.1	"dehydrodolichyl diphosphate synthase, putative, expressed"	Medtr5g078680.1	Di-trans-poly-cis-decaprenylcistransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
PtpAffx.201121.1.S1_at	A	A1TS	POPTR_0001s31940	POPTR_0001s31940 (10)	scaffold_1:30366438-30366964(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os02g51930.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201122.1.S1_s_at	A	A2TS	POPTR_0001s31920	POPTR_0001s31930 (11)//POPTR_0001s31920 (11)	scaffold_1:30326618-30327191(-) (11)//scaffold_1:30342941-30343514(-) (11)	NA	Q9LFQ3	Paired amphipathic helix protein Sin3-like 2	AT5G15020.2	SIN3-like 2 	LOC_Os05g01020.2	"transcriptional repressor, putative, expressed"	Medtr6g009610.1	"Paired amphipathic helix protein Sin3, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.201125.1.S1_at	A	A1TS	POPTR_0001s31860	POPTR_0001s31860 (11)	scaffold_1:30218164-30219770(+) (11)	NA	NA	NA	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	NA	NA	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201126.1.S1_at	A	A1TS	POPTR_0001s31840	POPTR_0001s31840 (11)	scaffold_1:30190675-30191133(-) (11)	POPTR_0017s07760 (6)	O57683	Splicing factor 3B subunit 1	AT5G64270.1	"splicing factor, putative "	LOC_Os02g05310.4	"splicing factor 3B subunit 1, putative, expressed"	Medtr2g009180.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201127.1.S1_at	A	A1TS	POPTR_0001s31820	POPTR_0001s31820 (10)	scaffold_1:30185542-30186114(+) (11)	NA	Q8LPB4	Phytosulfokine receptor 1	AT2G02220.1	phytosulfokin receptor 1 	LOC_Os04g57630.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr7g022110.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.201128.1.S1_at	A	A1TS	POPTR_0001s31780	POPTR_0001s31780 (11)	scaffold_1:30156797-30157141(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201129.1.S1_at	A	A1TS	POPTR_0001s31760	POPTR_0001s31760 (11)	scaffold_1:30146495-30148133(+) (11)	NA	NA	NA	AT2G14095.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 106 Blast hits to 103 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 4; Plants - 87; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os04g37760.1	expressed protein	Medtr4g120950.1	"plastid-targeted protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201130.1.S1_at	A	A1TS	POPTR_0001s31740	POPTR_0001s31740 (11)	scaffold_1:30131599-30132082(+) (11)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.201132.1.S1_at	A	A1TS	POPTR_0001s31730	POPTR_0001s31730 (11)	scaffold_1:30126537-30126874(+) (11)	NA	Q6BQ20	Autophagy-related protein 13	AT3G18770.1	Autophagy-related protein 13 	LOC_Os11g06320.1	expressed protein	Medtr3g144100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201133.1.S1_at	A	A1TS	POPTR_0001s31710	POPTR_0001s31710 (11)	scaffold_1:30074934-30075446(-) (11)	NA	Q6NQG7	RING-H2 finger protein ATL78	AT1G49230.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr3g144110.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201134.1.S1_at	A	A1TS	POPTR_0001s31660	POPTR_0001s31660 (11)	scaffold_1:30025753-30026278(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os03g02240.1	"AT-GTL1, putative, expressed"	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201135.1.S1_at	A	A1TS	POPTR_0001s31630	POPTR_0001s31630 (11)	scaffold_1:30000575-30001140(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201136.1.S1_at	A	A1TS	POPTR_0001s31620	POPTR_0001s31620 (11)	scaffold_1:29996112-29996385(-) (11)	NA	Q9C7N5	GDSL esterase/lipase At1g29660	AT1G29660.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201136.1.S1_s_at	A	A1TS	POPTR_0001s31620	POPTR_0001s31620 (11)	scaffold_1:29995954-29996804(-) (11)	NA	Q9C7N5	GDSL esterase/lipase At1g29660	AT1G29660.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201137.1.S1_at	A	A1TS	POPTR_0092s00210	POPTR_0092s00210 (11)	scaffold_92:63076-69463(-) (11)	POPTR_0001s31600 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201138.1.S1_s_at	A	A4TS	POPTR_0001s31550	POPTR_0001s31570 (11)//POPTR_0001s31580 (11)//POPTR_0001s31550 (11)//POPTR_0092s00200 (11)	scaffold_1:29888886-29890030(-) (11)//scaffold_1:29906738-29907878(-) (11)//scaffold_1:29928008-29929145(-) (11)//scaffold_92:12119-13240(-) (11)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25810.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.201139.1.S1_at	A	A1TS	POPTR_0001s31540	POPTR_0001s31540 (10)	scaffold_1:29874562-29875203(+) (11)	NA	P09800	Legumin B	AT5G44120.3	RmlC-like cupins superfamily protein 	LOC_Os01g55690.1	"glutelin, putative, expressed"	Medtr1g086770.2	Cupin region 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.201140.1.S1_at	A	A1TS	POPTR_0001s31530	POPTR_0001s31530 (11)	scaffold_1:29860064-29861610(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G25270.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os04g59120.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr2g008090.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.201142.1.S1_s_at	A	A1TS	POPTR_0001s31500	POPTR_0001s31500 (11)	scaffold_1:29801287-29801727(-) (11)	NA	Q9F131	3-hydroxybenzoate 6-hydroxylase 1	AT5G05320.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g05900.1	expressed protein	Medtr5g013370.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201143.1.S1_at	A	A1TS	POPTR_0001s31460	POPTR_0001s31460 (11)	scaffold_1:29742011-29742683(-) (11)	NA	Q39962	Citrate-binding protein	NA	NA	LOC_Os12g07310.1	"citrate-binding protein precursor, putative, expressed"	Medtr3g144330.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201144.1.S1_at	A	A1TS	POPTR_0001s31450	POPTR_0001s31450 (11)	scaffold_1:29740044-29740675(-) (11)	NA	Q39962	Citrate-binding protein	NA	NA	LOC_Os12g07310.1	"citrate-binding protein precursor, putative, expressed"	Medtr3g144330.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201145.1.S1_at	A	A1TS	POPTR_0001s31430	POPTR_0001s31430 (10)	scaffold_1:29733655-29734059(-) (10)	NA	Q5Q0H2	Fasciclin-like arabinogalactan protein 19	AT1G15190.1	Fasciclin-like arabinogalactan family protein 	NA	NA	Medtr2g008020.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201146.1.S1_at	A	A1TS	POPTR_0001s31420	POPTR_0001s31420 (11)	scaffold_1:29732822-29733145(+) (11)	NA	NA	NA	AT1G76750.1	Protein of unknown function (DUF1278) 	LOC_Os11g06730.1	"ECAGL2 - ECA1 gametogenesis related family protein precursor, expressed"	Medtr3g064370.1	Protein of unknown function DUF1278 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201147.1.S1_at	A	A1TS	POPTR_0001s31410	POPTR_0001s31410 (11)	scaffold_1:29731009-29731334(+) (11)	NA	NA	NA	AT4G39340.1	Protein of unknown function (DUF1278) 	LOC_Os11g06730.1	"ECAGL2 - ECA1 gametogenesis related family protein precursor, expressed"	Medtr3g064370.1	Protein of unknown function DUF1278 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201148.1.S1_at	A	A1MS	POPTR_0001s31390	POPTR_0001s31390 (11)	scaffold_1:29725182-29725341(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20115.1.S1_at	A	A1TS	POPTR_0006s13510	POPTR_0006s13510 (9)	scaffold_6:10730977-10731970(+) (9)	POPTR_0308s00200 (7)	Q0JHZ2	Zinc finger CCCH domain-containing protein 11	AT2G20280.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g61830.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr6g089260.1	Leucine-rich repeat 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.201150.1.S1_at	A	A1TS	POPTR_0001s31320	POPTR_0001s31320 (9)	scaffold_1:29663179-29665781(+) (11)	NA	NA	NA	AT1G34320.1	Protein of unknown function (DUF668) 	LOC_Os01g65330.1	expressed protein	Medtr4g144270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201151.1.S1_at	A	A1TS	POPTR_0001s31310	POPTR_0001s31310 (11)	scaffold_1:29642506-29644318(-) (11)	NA	Q5R7Q3	Magnesium transporter NIPA2	AT2G21120.1	Protein of unknown function (DUF803) 	LOC_Os05g35570.1	"DUF803 domain containing, putative, expressed"	Medtr4g144260.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201152.1.S1_at	A	A1MS	POPTR_0001s31290	POPTR_0001s31290 (11)	scaffold_1:29626513-29627026(+) (11)	NA	Q15291	Retinoblastoma-binding protein 5	AT3G21060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g10990.1	"retinoblastoma-binding protein-like, putative, expressed"	Medtr8g044790.1	C-type lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201153.1.S1_at	A	A1TS	POPTR_0001s31270	POPTR_0001s31270 (11)	scaffold_1:29601999-29603760(+) (11)	NA	Q31R08	GTP-binding protein lepA	AT5G08650.1	Small GTP-binding protein 	LOC_Os02g06300.1	"GTP-binding protein lepA, putative, expressed"	Medtr7g009110.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.201154.1.S1_at	A	A1TS	POPTR_0001s31230	POPTR_0001s31230 (11)	scaffold_1:29555727-29556130(-) (11)	NA	Q5U538	Putative nuclease HARBI1	AT3G63270.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g06910.1	expressed protein	Medtr4g129980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201155.1.S1_at	A	A1TS	POPTR_0001s31220	POPTR_0001s31220 (11)	scaffold_1:29549803-29549857(-) (11)	NA	O65922	Caffeoyl-CoA O-methyltransferase 2	AT4G34050.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.201156.1.S1_at	A	A1MS	POPTR_0001s31190	POPTR_0001s31190 (10)	scaffold_1:29528639-29529718(-) (11)	NA	NA	NA	AT4G34090.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g01920.1	expressed protein	Medtr7g127140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201157.1.S1_at	A	A1TS	POPTR_0001s31180	POPTR_0001s31180 (11)	scaffold_1:29527273-29527359(+) (11)	NA	Q9SLN1	Filament-like plant protein 7	AT3G19370.3	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201157.1.S1_s_at	A	A1TS	POPTR_0001s31180	POPTR_0001s31180 (11)	scaffold_1:29526925-29527393(+) (11)	NA	Q9SLN1	Filament-like plant protein 7	AT3G19370.3	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201158.1.S1_at	A	A1MS	POPTR_0001s31010	POPTR_0001s31010 (10)	scaffold_1:29424410-29425030(-) (10)	POPTR_0001s31020 (6)	NA	NA	AT2G15490.3	UDP-glycosyltransferase 73B4 	NA	NA	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201160.1.S1_at	A	A1TS	POPTR_0001s30970	POPTR_0001s30970 (11)	scaffold_1:29388282-29388880(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT4G34131.1	UDP-glucosyl transferase 73B3 	LOC_Os01g08090.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201163.1.S1_at	A	A1MS	POPTR_0001s30870	POPTR_0001s30870 (10)	scaffold_1:29284145-29285152(-) (11)	NA	NA	NA	AT2G01640.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os12g14110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201164.1.S1_at	A	A1TS	POPTR_0001s30850	POPTR_0001s30850 (10)	scaffold_1:29281774-29283275(+) (10)	NA	P51823	ADP-ribosylation factor 2	AT3G62290.3	ADP-ribosylation factor A1E 	LOC_Os05g41060.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g016470.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.201165.1.S1_at	A	A1TS	POPTR_0001s30810	POPTR_0001s30810 (11)	scaffold_1:29264578-29265374(+) (11)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os04g20810.3	"receptor protein kinase, putative, expressed"	Medtr4g032150.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201166.1.S1_s_at	A	A1TS	POPTR_0001s30800	POPTR_0001s30800 (11)	scaffold_1:29259270-29259819(+) (11)	NA	Q94C77	Receptor protein kinase-like protein At4g34220	AT4G34220.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g02250.1	"transposon protein, putative, unclassified, expressed"	Medtr7g076330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.201167.1.S1_at	A	A1TS	POPTR_0001s30790	POPTR_0001s30790 (11)	scaffold_1:29247909-29249144(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201169.1.S1_at	A	A1TS	POPTR_0001s30720	POPTR_0001s30720 (11)	scaffold_1:29194913-29195198(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20117.1.S1_a_at	A	A1MS	POPTR_0003s05500	POPTR_0003s05500 (11)	scaffold_3:6804094-6804390(+) (11)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.2	"coatomer subunit beta, putative, expressed"	AC234703_19.2	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.20117.2.A1_at	A	A1TS	POPTR_0003s05500	POPTR_0003s05500 (11)	scaffold_3:6804658-6804871(+) (11)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.2	"coatomer subunit beta, putative, expressed"	AC234703_19.2	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.201170.1.S1_at	A	A1TS	POPTR_0001s30670	POPTR_0001s30670 (9)	scaffold_1:29147406-29148073(+) (9)	NA	Q9LT67	Transcription factor bHLH113	AT3G19500.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr2g011150.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.201171.1.S1_at	A	A1TS	POPTR_0001s30610	POPTR_0001s30610 (11)	scaffold_1:29084876-29086276(-) (11)	NA	Q8L7W8	Alpha-L-fucosidase 2	AT4G34260.1	"1,2-alpha-L-fucosidases "	LOC_Os10g19880.1	"alpha-1,2-fucosidase, putative, expressed"	Medtr8g129740.1	"Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201172.1.S1_at	A	A1TS	POPTR_0001s30590	POPTR_0001s30590 (11)	scaffold_1:29077530-29077904(-) (11)	NA	Q39266	Zinc finger protein 7	AT1G24625.1	zinc finger protein 7 	LOC_Os12g39220.1	"ZOS12-08 - C2H2 zinc finger protein, expressed"	Medtr3g087170.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201172.1.S1_s_at	A	A2TS	POPTR_0001s30590	POPTR_0009s09630 (11)//POPTR_0001s30590 (11)	scaffold_1:29077624-29077811(-) (11)//scaffold_9:8475176-8475363(-) (11)	NA	Q39266	Zinc finger protein 7	AT1G24625.1	zinc finger protein 7 	LOC_Os12g39220.1	"ZOS12-08 - C2H2 zinc finger protein, expressed"	Medtr3g087170.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201173.1.S1_at	A	A1TS	POPTR_0001s30530	POPTR_0001s30530 (11)	scaffold_1:29004596-29006094(-) (11)	NA	Q9LVC3	Pumilio homolog 12	AT5G56510.1	pumilio 12 	LOC_Os11g37090.1	"pumilio-family RNA binding repeat domain containing protein, expressed"	Medtr2g007000.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.201174.1.S1_at	A	A1TS	POPTR_0001s30470	POPTR_0001s30470 (11)	scaffold_1:28930378-28930641(-) (11)	NA	NA	NA	AT3G19540.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201175.1.S1_at	A	A1TS	POPTR_0001s30450	POPTR_0001s30450 (11)	scaffold_1:28908174-28908708(-) (11)	NA	Q9LYZ9	Pentatricopeptide repeat-containing protein At5g02860	AT5G02860.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g40120.1	"pentatricopeptide, putative, expressed"	Medtr2g041460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201176.1.S1_at	A	A1TS	POPTR_0001s30430	POPTR_0001s30430 (11)	scaffold_1:28891479-28891822(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201177.1.S1_at	A	A1TS	POPTR_0001s30410	POPTR_0001s30410 (11)	scaffold_1:28886082-28886229(+) (11)	NA	NA	NA	AT3G19550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g32290.1	expressed protein	Medtr5g005010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201178.1.S1_at	A	A1TS	POPTR_0001s30390	POPTR_0001s30390 (11)	scaffold_1:28869044-28869575(-) (11)	NA	NA	NA	AT1G49870.1	"unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 6518 Blast hits to 5022 proteins in 522 species: Archae - 49; Bacteria - 635; Metazoa - 3264; Fungi - 379; Plants - 242; Viruses - 9; Other Eukaryotes - 1940 (source: NCBI BLink). "	LOC_Os03g40780.1	"transport protein-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201179.1.S1_at	A	A1TS	POPTR_0001s30370	POPTR_0001s30370 (11)	scaffold_1:28858664-28858863(-) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT3G43740.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g32580.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g005220.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.201180.1.S1_at	A	A1TS	POPTR_0001s30320	POPTR_0001s30320 (10)	scaffold_1:28835655-28838093(-) (11)	NA	Q8GXX0	FAD-linked sulfhydryl oxidase ERV1	AT1G49880.1	Erv1/Alr family protein 	LOC_Os03g10850.1	"FAD-linked sulfhydryl oxidase ALR, putative, expressed"	Medtr7g135760.1	Erv1/Alr 	GO:0055114|oxidation reduction	GO:0016972|thiol oxidase activity	NA
PtpAffx.201181.1.S1_at	A	A1TS	POPTR_0001s30290	POPTR_0001s30290 (11)	scaffold_1:28813548-28814925(-) (11)	NA	NA	NA	AT1G49890.1	Family of unknown function (DUF566)  	LOC_Os03g10820.1	expressed protein	Medtr1g023430.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201182.1.S1_at	A	A1TS	POPTR_0001s30280	POPTR_0001s30280 (11)	scaffold_1:28809134-28809174(+) (11)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201182.1.S1_s_at	A	A1TS	POPTR_0001s30280	POPTR_0001s30280 (11)	scaffold_1:28808641-28809349(+) (11)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201183.1.S1_at	A	A1TS	POPTR_0001s30270	POPTR_0001s30270 (11)	scaffold_1:28803083-28803903(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT2G14820.1	Phototropic-responsive NPH3 family protein 	LOC_Os12g39380.1	"BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr1g135040.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.201184.1.S1_at	A	A1MS	POPTR_0857s00200	POPTR_0857s00200 (9)	scaffold_857:2945-3876(+) (9)	POPTR_0001s30250 (7)	Q9XJ35	"ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic"	AT1G49970.1	CLP protease proteolytic subunit 1 	LOC_Os05g51450.1	"OsClp8 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201184.1.S1_x_at	A	A1MS	POPTR_0857s00200	POPTR_0857s00200 (9)	scaffold_857:2291-3898(+) (9)	POPTR_0001s30250 (7)	Q9XJ35	"ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic"	AT1G49970.1	CLP protease proteolytic subunit 1 	LOC_Os05g51450.1	"OsClp8 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201186.1.S1_at	A	A1TS	POPTR_0001s30230	POPTR_0001s30230 (11)	scaffold_1:28750264-28752770(+) (11)	NA	Q1JQB2	Mitotic checkpoint protein BUB3	AT3G19590.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g33580.1	"mitotic checkpoint protein, putative, expressed"	Medtr5g005250.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201187.1.S1_at	A	A1TS	POPTR_0001s30190	POPTR_0001s30190 (10)	scaffold_1:28730039-28730608(+) (10)	NA	Q9LJN4	Probable beta-D-xylosidase 5	AT3G19620.1	Glycosyl hydrolase family protein 	LOC_Os04g54810.1	"beta-D-xylosidase, putative, expressed"	Medtr2g008400.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.201188.1.S1_at	A	A1TS	POPTR_0001s30180	POPTR_0001s30180 (11)	scaffold_1:28723507-28724008(-) (11)	NA	NA	NA	AT3G19610.1	Plant protein of unknown function (DUF936) 	LOC_Os08g42870.1	expressed protein	Medtr4g092550.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201189.1.S1_at	A	A1TS	POPTR_0001s30150	POPTR_0001s30150 (11)	scaffold_1:28707216-28708302(+) (11)	NA	Q7XHI9	Transcription factor bHLH84	AT2G14760.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g42100.1	helix-loop-helix DNA-binding domain containing protein	Medtr5g005270.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.201190.1.S1_at	A	A1TS	POPTR_0001s30140	POPTR_0001s30140 (11)	scaffold_1:28695915-28697192(+) (11)	NA	Q9N4Y9	Zinc finger protein-like 1 homolog	AT2G14835.2	RING/U-box superfamily protein 	LOC_Os10g20600.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g135130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201191.1.S1_a_at	A	A1TS	POPTR_0001s30130	POPTR_0001s30130 (11)	scaffold_1:28690684-28690726(-) (11)//scaffold_1:28690928-28690970(-) (11)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT5G67500.1	voltage dependent anion channel 2 	LOC_Os03g10510.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.201191.1.S1_at	A	A1TS	POPTR_0001s30130	POPTR_0001s30130 (11)	scaffold_1:28689388-28690664(-) (11)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT5G67500.1	voltage dependent anion channel 2 	LOC_Os03g10510.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.201192.1.S1_at	A	A1TS	POPTR_0001s30120	POPTR_0001s30120 (11)	scaffold_1:28680638-28681331(-) (11)	NA	Q9SMX3	Mitochondrial outer membrane protein porin 2	AT5G67500.1	voltage dependent anion channel 2 	LOC_Os03g10510.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.201193.1.S1_at	A	A1TS	POPTR_0001s30100	POPTR_0001s30100 (11)	scaffold_1:28666016-28667622(-) (11)	NA	Q9SRH5	Mitochondrial outer membrane protein porin 1	AT5G67500.1	voltage dependent anion channel 2 	LOC_Os03g10510.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201194.1.S1_at	A	A1TS	POPTR_0001s30070	POPTR_0001s30070 (11)	scaffold_1:28656752-28658796(+) (11)	NA	P34409	DNA polymerase kappa	AT1G49980.1	DNA/RNA polymerases superfamily protein 	LOC_Os03g42010.1	"DNA-directed polymerase, putative, expressed"	Medtr5g005380.1	UMUC-like DNA-repair protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
PtpAffx.201195.1.S1_at	A	A1TS	POPTR_0001s30040	POPTR_0001s30040 (11)	scaffold_1:28630308-28630859(-) (11)	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201196.1.S1_at	A	A1TS	POPTR_0001s30010	POPTR_0001s30010 (11)	scaffold_1:28592157-28592907(+) (11)	NA	NA	NA	AT2G14680.3	myosin heavy chain-related 	LOC_Os03g31730.1	expressed protein	Medtr5g005400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201197.1.S1_at	A	A1TS	POPTR_0001s30010	POPTR_0001s30010 (10)	scaffold_1:28589953-28590965(+) (11)	NA	NA	NA	AT2G14680.3	myosin heavy chain-related 	LOC_Os03g31730.1	expressed protein	Medtr5g005400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201199.1.S1_at	A	A1TS	POPTR_0001s29970	POPTR_0001s29970 (11)	scaffold_1:28547871-28548075(-) (11)	NA	Q6YXH8	Cyclin-D4-1	AT5G65420.1	CYCLIN D4;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr5g033980.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201200.1.S1_at	A	A1TS	POPTR_0001s29770	POPTR_0001s29770 (11)	scaffold_1:28386719-28387140(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201201.1.S1_at	A	A1TS	POPTR_0001s29760	POPTR_0001s29760 (11)	scaffold_1:28383488-28383976(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201202.1.S1_at	A	A1TS	POPTR_0001s29740	POPTR_0001s29740 (11)	scaffold_1:28368726-28369977(+) (11)	NA	P54461	Ribosomal RNA small subunit methyltransferase E	AT1G50000.1	methyltransferases 	LOC_Os03g51984.1	"differentiation protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity	NA
PtpAffx.201203.1.S1_at	A	A1TS	POPTR_0001s29730	POPTR_0001s29730 (11)	scaffold_1:28359875-28360517(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201204.1.S1_s_at	A	A1TS	POPTR_0001s29710	POPTR_0001s29710 (11)	scaffold_1:28355260-28355730(+) (11)	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	LOC_Os01g34780.2	"protein binding protein, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.201205.1.S1_at	A	A1TS	POPTR_0001s29700	POPTR_0001s29700 (11)	scaffold_1:28331148-28332111(-) (11)	NA	NA	NA	AT1G17870.1	ethylene-dependent gravitropism-deficient and yellow-green-like 3 	LOC_Os03g51920.1	"peptidase, M50 family, putative, expressed"	Medtr4g005620.1	"ATEGY3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201206.1.S1_at	A	A1TS	POPTR_0001s29700	POPTR_0001s29700 (11)	scaffold_1:28329625-28330878(-) (11)	NA	NA	NA	AT1G17870.1	ethylene-dependent gravitropism-deficient and yellow-green-like 3 	LOC_Os03g51920.1	"peptidase, M50 family, putative, expressed"	Medtr4g005620.1	"ATEGY3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201207.1.S1_s_at	A	A1TS	POPTR_0001s29680	POPTR_0001s29680 (11)	scaffold_1:28318168-28320402(-) (11)	NA	NA	NA	AT4G33780.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g12930.1	expressed protein	Medtr5g038230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201208.1.S1_at	A	A1TS	POPTR_0001s29580	POPTR_0001s29580 (10)	scaffold_1:28211568-28212048(+) (10)	NA	NA	NA	AT4G37820.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1); Has 433572 Blast hits to 177005 proteins in 4263 species: Archae - 2016; Bacteria - 67591; Metazoa - 157995; Fungi - 49745; Plants - 22011; Viruses - 2192; Other Eukaryotes - 132022 (source: NCBI BLink). 	LOC_Os06g36050.1	expressed protein	AC235005_3.1	hypothetical protein AC235005.1 9201-11167 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201209.1.S1_at	A	A1TS	POPTR_0001s29570	POPTR_0001s29570 (10)	scaffold_1:28204360-28204867(-) (10)	NA	NA	NA	AT1G77180.2	chromatin protein family 	LOC_Os02g52250.1	"SKIP/SNW domain containing protein, expressed"	Medtr2g129890.1	SKIP/SNW 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201211.1.S1_at	A	A1TS	POPTR_0001s29490	POPTR_0001s29490 (11)	scaffold_1:28155205-28155658(-) (11)	NA	Q12296	Protein MAM3	AT2G14520.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g47120.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201211.1.S1_x_at	A	A1TS	POPTR_0001s29490	POPTR_0001s29490 (11)	scaffold_1:28155156-28155867(-) (11)	NA	Q12296	Protein MAM3	AT2G14520.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g47120.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201212.1.S1_at	A	A1TS	POPTR_0001s29480	POPTR_0001s29480 (11)	scaffold_1:28150562-28151878(+) (11)	NA	NA	NA	AT4G33690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 543 Blast hits to 512 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 54; Plants - 72; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). 	LOC_Os07g11290.1	expressed protein	Medtr2g010570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201213.1.S1_s_at	A	A1MS	POPTR_0001s29470	POPTR_0001s29470 (11)	scaffold_1:28138746-28138937(+) (11)	NA	NA	NA	AT4G17000.1	unknown protein; Has 2862 Blast hits to 2331 proteins in 349 species: Archae - 6; Bacteria - 408; Metazoa - 833; Fungi - 223; Plants - 134; Viruses - 7; Other Eukaryotes - 1251 (source: NCBI BLink). 	LOC_Os03g56070.1	expressed protein	Medtr2g010530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201214.1.S1_at	A	A1TS	POPTR_0001s29460	POPTR_0001s29460 (11)	scaffold_1:28130705-28133484(+) (11)	NA	P93732	Proline iminopeptidase	AT2G14260.1	proline iminopeptidase 	LOC_Os05g43830.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr2g010520.1	"Peptidase S33, prolyl aminopeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201215.1.S1_at	A	A1TS	POPTR_0001s29410	POPTR_0001s29410 (11)	scaffold_1:28100121-28101382(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201216.1.S1_at	A	A1TS	POPTR_0001s29400	POPTR_0001s29400 (11)	scaffold_1:28097740-28098426(+) (11)	NA	Q9T072	Transcription factor bHLH25	AT4G37850.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g51580.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g010480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.201217.1.S1_at	A	A1TS	POPTR_0001s29380	POPTR_0001s29380 (11)	scaffold_1:28080841-28082590(+) (11)	NA	Q3EC11	Probable S-acyltransferase At2g14255	AT2G14255.1	Ankyrin repeat family protein with DHHC zinc finger domain 	LOC_Os11g34860.1	"palmitoyltransferase TIP1, putative, expressed"	Medtr4g121920.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.201219.1.S1_at	A	A1TS	POPTR_0001s29310	POPTR_0001s29310 (11)	scaffold_1:28033100-28033192(-) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.201219.1.S1_s_at	A	A1TS	POPTR_0001s29310	POPTR_0001s29310 (11)	scaffold_1:28033210-28033375(-) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.201219.1.S1_x_at	A	A1TS	POPTR_0001s29310	POPTR_0001s29310 (11)	scaffold_1:28033086-28033399(-) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.201220.1.S1_at	A	A1TS	POPTR_0001s29300	POPTR_0001s29300 (11)	scaffold_1:28027632-28027755(-) (11)	NA	Q640V2	Protein RMD5 homolog A	AT5G09630.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os06g38940.2	"RMD5 homolog A, putative, expressed"	Medtr2g010250.1	"Zinc finger, RING-type; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201220.1.S1_s_at	A	A1TS	POPTR_0001s29300	POPTR_0001s29300 (11)	scaffold_1:28027544-28028093(-) (11)	NA	Q640V2	Protein RMD5 homolog A	AT5G09630.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os06g38940.2	"RMD5 homolog A, putative, expressed"	Medtr2g010250.1	"Zinc finger, RING-type; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201222.1.S1_s_at	A	A1TS	POPTR_0001s29250	POPTR_0001s29250 (10)	scaffold_1:27984846-27985417(-) (10)	NA	NA	NA	AT5G64430.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os02g56480.1	"PB1 domain containing protein, expressed"	Medtr2g010210.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201223.1.S1_at	A	A1TS	POPTR_0001s29240	POPTR_0001s29240 (11)	scaffold_1:27967509-27968051(-) (11)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G73150.1	global transcription factor group E3 	LOC_Os01g11580.1	"bromodomain containing protein, expressed"	Medtr4g121770.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201224.1.S1_at	A	A1TS	POPTR_0001s29200	POPTR_0001s29200 (11)	scaffold_1:27947519-27948841(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201226.1.S1_at	A	A1TS	POPTR_0001s29090	POPTR_0001s29090 (9)	scaffold_1:27877427-27877518(-) (9)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201226.1.S1_x_at	A	A1TS	POPTR_0001s29090	POPTR_0001s29090 (10)	scaffold_1:27875783-27877730(-) (10)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201229.1.S1_s_at	A	A1TS	POPTR_0001s29100	POPTR_0001s29100 (11)	scaffold_1:27810806-27810911(+) (11)//scaffold_1:27887576-27887681(+) (11)	NA	Q40702	MADS-box transcription factor 2	AT2G14210.1	AGAMOUS-like 44 	LOC_Os04g38770.1	OsMADS61 - MADS-box family gene with MIKCc type-box	Medtr2g009970.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.201231.1.S1_at	A	A1TS	POPTR_0001s29030	POPTR_0001s29030 (11)	scaffold_1:27772344-27773032(+) (11)	NA	Q91DM0	Genome polyprotein	AT1G37113.1	unknown protein; LOCATED IN: chloroplast; Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 14; Viruses - 6; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201234.1.S1_at	A	A1TS	POPTR_0001s36520	POPTR_0001s36520 (11)	scaffold_1:35145557-35146302(-) (11)	NA	Q39224	Protein SRG1	AT1G17020.1	senescence-related gene 1 	LOC_Os10g41020.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235677_19.1	2OG-Fe(II) oxygenase AC235677.1 84535-88047 E EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201235.1.S1_at	A	A1TS	POPTR_0001s36550	POPTR_0001s36550 (11)	scaffold_1:35184917-35185816(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT3G14770.1	Nodulin MtN3 family protein 	LOC_Os01g36070.1	"nodulin MtN3 family protein, putative, expressed"	AC147714_1.1	MtN3 and saliva related transmembrane protein AC147714.8 37997-39514 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201236.1.S1_at	A	A1TS	POPTR_0001s36570	POPTR_0001s36570 (11)	scaffold_1:35224770-35225088(-) (11)	NA	NA	NA	AT1G50650.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr7g026180.1	Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201237.1.S1_at	A	A1TS	POPTR_0001s36600	POPTR_0001s36600 (11)	scaffold_1:35247481-35248058(-) (11)	NA	O48766	Endoglucanase 11	AT2G32990.1	glycosyl hydrolase 9B8 	LOC_Os02g50490.1	"endoglucanase, putative, expressed"	Medtr5g093090.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.201238.1.S1_at	A	A1TS	POPTR_0001s36620	POPTR_0001s36620 (11)	scaffold_1:35306115-35307220(+) (11)	NA	NA	NA	AT3G20300.1	Protein of unknown function (DUF3537) 	LOC_Os06g42850.1	"extracellular ligand-gated ion channel, putative, expressed"	Medtr2g029220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201239.1.S1_s_at	A	A1TS	POPTR_0001s36660	POPTR_0001s36660 (11)	scaffold_1:35353647-35353929(+) (11)	NA	NA	NA	AT1G50720.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201240.1.S1_at	A	A1TS	POPTR_0001s36670	POPTR_0001s36670 (11)	scaffold_1:35363292-35364941(+) (11)	NA	A4VCH4	UPF0505 protein C16orf62 homolog	AT1G50730.1	unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). 	NA	NA	Medtr1g149750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201241.1.S1_s_at	A	A1TS	POPTR_0001s36670	POPTR_0001s36670 (11)	scaffold_1:35370271-35372178(+) (11)	NA	A4VCH4	UPF0505 protein C16orf62 homolog	AT1G50730.1	unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). 	NA	NA	Medtr1g149750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201242.1.S1_at	A	A1TS	POPTR_0001s36680	POPTR_0001s36680 (11)	scaffold_1:35375088-35377333(+) (11)	NA	A4VCH4	UPF0505 protein C16orf62 homolog	AT1G50730.1	unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). 	NA	NA	Medtr1g149750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201243.1.S1_at	A	A1TS	POPTR_0001s36690	POPTR_0001s36690 (11)	scaffold_1:35386905-35387168(+) (11)	NA	Q12872	"Splicing factor, arginine/serine-rich 8"	AT5G55100.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 	LOC_Os01g50320.1	"surp module family protein, putative, expressed"	Medtr5g100990.1	SWAP/Surp 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.201244.1.S1_at	A	A1TS	POPTR_0001s36730	POPTR_0001s36730 (11)	scaffold_1:35452567-35454652(-) (11)	NA	Q43087	"Aspartate carbamoyltransferase 2, chloroplastic"	AT3G20330.1	PYRIMIDINE B 	LOC_Os08g15030.1	"aspartate carbamoyltransferase, putative, expressed"	Medtr5g101000.1	Aspartate carbamoyltransferase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016743|carboxyl- or carbamoyltransferase activity	NA
PtpAffx.201245.1.S1_at	A	A1TS	POPTR_0001s36730	POPTR_0001s36730 (9)	scaffold_1:35455197-35457553(-) (10)	NA	Q43087	"Aspartate carbamoyltransferase 2, chloroplastic"	AT3G20330.1	PYRIMIDINE B 	LOC_Os08g15030.1	"aspartate carbamoyltransferase, putative, expressed"	Medtr5g101000.1	Aspartate carbamoyltransferase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016743|carboxyl- or carbamoyltransferase activity	NA
PtpAffx.201246.1.S1_at	A	A1TS	POPTR_0001s36740	POPTR_0001s36740 (11)	scaffold_1:35457597-35457906(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201247.1.S1_at	A	A1TS	POPTR_0001s36750	POPTR_0001s36750 (11)	scaffold_1:35476630-35477134(+) (11)	NA	Q9WVL3	Solute carrier family 12 member 7	AT1G30450.2	cation-chloride co-transporter 1 	LOC_Os08g23440.1	"amino acid permease family protein, putative, expressed"	Medtr2g055740.1	Amino acid permease-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201248.1.S1_at	A	A1TS	POPTR_0001s36770	POPTR_0001s36770 (11)	scaffold_1:35487947-35488375(+) (11)	NA	Q63632	Solute carrier family 12 member 4	AT1G30450.2	cation-chloride co-transporter 1 	LOC_Os01g19850.1	"amino acid permease family protein, putative"	Medtr2g055760.1	Interleukin-6/G-CSF/MGF; Amino acid permease-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201249.1.S1_at	A	A1TS	POPTR_0001s36780	POPTR_0001s36780 (10)	scaffold_1:35493246-35493751(+) (11)	NA	Q924N4	Solute carrier family 12 member 6	AT1G30450.2	cation-chloride co-transporter 1 	LOC_Os08g23440.1	"amino acid permease family protein, putative, expressed"	Medtr2g055760.1	Interleukin-6/G-CSF/MGF; Amino acid permease-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201250.1.S1_s_at	A	A1TS	POPTR_0001s36800	POPTR_0001s36800 (11)	scaffold_1:35514693-35515168(+) (11)	NA	NA	NA	AT2G34680.1	Outer arm dynein light chain 1 protein 	LOC_Os07g05470.1	"AIR9 protein, putative, expressed"	Medtr2g055450.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.201251.1.S1_at	A	A1TS	POPTR_0001s36810	POPTR_0001s36810 (11)	scaffold_1:35556437-35557000(-) (11)	NA	A9LNK9	Cleavage and polyadenylation specificity factor CPSF30	AT1G30460.1	cleavage and polyadenylation specificity factor 30 	LOC_Os06g46400.1	"ATCPSF30/CPSF30, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.201252.1.S1_at	A	A1TS	POPTR_0001s36830	POPTR_0001s36830 (11)	scaffold_1:35581015-35581583(-) (11)	NA	Q9M0V3	DNA damage-binding protein 1a	AT4G05420.1	damaged DNA binding protein 1A 	LOC_Os05g51480.1	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr4g137930.1	"CPSF A subunit, C-terminal; WD40-like "	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.201253.1.S1_at	A	A1TS	POPTR_0001s36840	POPTR_0001s36840 (11)	scaffold_1:35600084-35601451(-) (11)	NA	Q8RXD4	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog	AT4G21070.1	breast cancer susceptibility1 	LOC_Os05g43610.1	"ATBARD1/BARD1, putative, expressed"	Medtr7g116590.1	BRCA1 	NA	NA	GO:0005622|intracellular
PtpAffx.201254.1.S1_at	A	A1TS	POPTR_0001s36880	POPTR_0001s36880 (11)	scaffold_1:35647045-35653982(+) (11)	NA	NA	NA	AT2G34640.1	plastid transcriptionally active 12 	LOC_Os01g56350.3	"PTAC12, putative, expressed"	Medtr2g022260.1	"PTAC12, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201255.1.S1_at	A	A1TS	POPTR_0001s36930	POPTR_0001s36930 (11)	scaffold_1:35732133-35733300(+) (11)	NA	Q8VYC2	Putative BPI/LBP family protein At3g20270	AT1G04970.1	lipid-binding serum glycoprotein family protein 	LOC_Os09g30474.1	"BPI/LBP family protein At3g20270 precursor, putative, expressed"	Medtr5g092010.1	Lipid-binding serum glycoprotein 	NA	GO:0008289|lipid binding	NA
PtpAffx.201256.1.S1_at	A	A1TS	POPTR_0001s36940	POPTR_0001s36940 (11)	scaffold_1:35745305-35746193(+) (11)	NA	Q5PNS0	PHD finger protein At3g20280	AT1G50620.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g20410.1	"BAH domain containing protein, expressed"	Medtr5g101370.1	"Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	NA
PtpAffx.201256.1.S1_s_at	A	A1TS	POPTR_0001s36940	POPTR_0001s36940 (11)	scaffold_1:35745165-35746120(+) (11)	NA	Q5PNS0	PHD finger protein At3g20280	AT1G50620.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g20410.1	"BAH domain containing protein, expressed"	Medtr5g101370.1	"Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	NA
PtpAffx.201257.1.S1_at	A	A1TS	POPTR_0001s36950	POPTR_0001s36950 (11)	scaffold_1:35769741-35771100(+) (11)	NA	Q9FKR0	Probable S-adenosylmethionine-dependent methyltransferase At5g38780	AT5G55250.1	IAA carboxylmethyltransferase 1 	LOC_Os04g56950.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr5g101300.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.201258.1.S1_at	A	A1TS	POPTR_0001s36960	POPTR_0001s36960 (11)	scaffold_1:35785275-35787339(-) (11)	NA	Q757Q6	"1,4-alpha-glucan-branching enzyme"	AT3G20440.2	Alpha amylase family protein 	LOC_Os06g26234.3	"1,4-alpha-glucan-branching enzyme, putative, expressed"	Medtr7g126840.1	"Alpha amylase, C-terminal all-beta; "	GO:0005975|carbohydrate metabolic process	GO:0043169|cation binding||GO:0003824|catalytic activity	NA
PtpAffx.201260.1.S1_at	A	A1TS	POPTR_0001s36980	POPTR_0001s36980 (11)	scaffold_1:35800142-35801895(-) (11)	NA	Q6CCT1	"1,4-alpha-glucan-branching enzyme"	AT3G20440.2	Alpha amylase family protein 	LOC_Os06g26234.2	"1,4-alpha-glucan-branching enzyme, putative, expressed"	Medtr7g126850.1	"Alpha amylase, catalytic region "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.201261.1.S1_at	A	A1TS	POPTR_0001s37010	POPTR_0001s37010 (11)	scaffold_1:35839095-35839300(+) (11)	NA	O74462	Transcription initiation factor TFIID subunit 6	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59 	LOC_Os01g32750.1	"TATA binding protein-associated factor, putative, expressed"	Medtr7g026010.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0051090|regulation of transcription factor activity||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity||GO:0016986|transcription initiation factor activity	GO:0005634|nucleus
PtpAffx.201262.1.S1_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (10)	scaffold_1:35866628-35866733(+) (11)//scaffold_2:5544894-5544999(+) (10)	POPTR_0001s37050 (8)	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201263.1.S1_at	A	A1TS	POPTR_0001s37070	POPTR_0001s37070 (11)	scaffold_1:35881902-35882213(-) (11)	NA	NA	NA	AT5G55390.2	ENHANCED DOWNY MILDEW 2 	LOC_Os08g24946.1	"EDM2, putative, expressed"	Medtr8g008730.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201264.1.S1_at	A	A1TS	POPTR_0001s37070	POPTR_0001s37070 (10)	scaffold_1:35888189-35889310(-) (10)	NA	NA	NA	AT5G55390.2	ENHANCED DOWNY MILDEW 2 	LOC_Os08g24946.1	"EDM2, putative, expressed"	Medtr8g008730.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201265.1.S1_at	A	A1TS	POPTR_0001s37120	POPTR_0001s37120 (11)	scaffold_1:35949616-35950348(+) (11)	NA	Q9NS87	Kinesin-like protein KIF15	AT3G20150.1	Kinesin motor family protein 	LOC_Os03g39020.1	"Kinesin motor domain domain containing protein, expressed"	Medtr5g101770.1	"Kinesin, motor region; Kinesin-related "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.201267.1.S1_at	A	A1TS	POPTR_0001s37190	POPTR_0001s37190 (10)	scaffold_1:36103490-36103919(-) (11)	NA	NA	NA	NA	NA	LOC_Os10g03070.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201268.1.S1_at	A	A1TS	POPTR_0001s37210	POPTR_0001s37210 (11)	scaffold_1:36167686-36168139(-) (11)	NA	Q7RTR2	Protein NLRC3	AT5G55540.1	tornado 1 	LOC_Os03g53990.1	expressed protein	Medtr3g076970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201269.1.S1_at	A	A1TS	POPTR_0001s37240	POPTR_0001s37240 (11)	scaffold_1:36186038-36186595(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.20127.1.S1_at	A	A1TS	POPTR_0005s09260	POPTR_0005s09260 (9)	scaffold_5:6474948-6477300(-) (9)	NA	Q5BU09	E2F-associated phosphoprotein	AT5G08320.1	"CONTAINS InterPro DOMAIN/s: E2F-associated phosphoprotein, C-terminal (InterPro:IPR019370); Has 149 Blast hits to 149 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). "	LOC_Os02g42374.1	"e2f-associated phosphoprotein, putative, expressed"	Medtr1g143640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201271.1.S1_at	A	A1TS	POPTR_0001s37280	POPTR_0001s37280 (11)	scaffold_1:36266960-36267923(+) (11)	NA	NA	NA	AT5G55580.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g39430.1	"mTERF family protein, expressed"	Medtr5g102090.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201272.1.S1_at	A	A1TS	POPTR_0001s37290	POPTR_0001s37290 (11)	scaffold_1:36275624-36276699(-) (11)	NA	Q2YDW2	Protein misato homolog 1	AT4G37190.1	"LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation binding site (InterPro:IPR013838), Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 345 Blast hits to 341 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). "	LOC_Os03g13770.1	"tubulin, putative, expressed"	Medtr5g017950.1	"tubulin-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201273.1.S1_at	A	A1TS	POPTR_0001s37320	POPTR_0001s37320 (11)	scaffold_1:36297677-36299743(-) (11)	NA	P67131	UPF0053 protein Mb2387c	AT3G13070.1	CBS domain-containing protein / transporter associated domain-containing protein 	LOC_Os03g39640.2	"CBS domain containing protein, expressed"	Medtr5g102230.1	CBS; Transporter-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201276.1.S1_at	A	A1TS	POPTR_0001s37390	POPTR_0001s37390 (11)	scaffold_1:36388517-36389099(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201277.1.S1_s_at	A	A2TS	POPTR_0001s36450	POPTR_0021s00225 (11)//POPTR_0001s36450 (11)	scaffold_1:35044303-35044588(-) (11)//scaffold_21:45185-45473(+) (11)	NA	Q9FH83	Probable WRKY transcription factor 52	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g011660.1	TIR; Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.201279.1.S1_at	A	A1TS	POPTR_0001s37440	POPTR_0001s37440 (11)	scaffold_1:36436061-36436785(+) (11)	NA	Q9FM79	Pectinesterase QRT1	AT5G55590.1	Pectin lyase-like superfamily protein 	LOC_Os07g41650.1	"pectinesterase, putative, expressed"	Medtr5g103060.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.201280.1.S1_s_at	A	A1TS	POPTR_0001s37450	POPTR_0001s37450 (11)	scaffold_1:36438184-36438840(-) (11)	NA	NA	NA	AT5G55600.3	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os07g41640.1	"agenet domain-containing protein, putative, expressed"	Medtr2g030390.1	Bromo adjacent region; Xylose isomerase; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
PtpAffx.201281.1.S1_at	A	A1TS	POPTR_0001s37460	POPTR_0001s37460 (11)	scaffold_1:36446547-36447440(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201283.1.S1_at	A	A1TS	POPTR_0001s37530	POPTR_0001s37530 (11)	scaffold_1:36504563-36505346(-) (11)	NA	NA	NA	AT3G13140.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201284.1.S1_at	A	A1TS	POPTR_0001s37540	POPTR_0001s37540 (11)	scaffold_1:36506184-36506979(-) (11)	NA	Q9M4A2	Meiotic recombination protein SPO11-1	AT3G13170.1	"Spo11/DNA topoisomerase VI, subunit A protein "	LOC_Os03g54091.1	"OsTOP6A1 - Topoisomerase 6 subunit A homolog 1, expressed"	Medtr5g102650.1	"DNA topoisomerase, type II; Winged helix repressor DNA-binding "	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0003824|catalytic activity	GO:0005694|chromosome
PtpAffx.201287.1.S1_at	A	A1TS	POPTR_0001s37600	POPTR_0001s37600 (11)	scaffold_1:36563521-36564004(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201288.1.S1_at	A	A1TS	POPTR_0001s37640	POPTR_0001s37640 (10)	scaffold_1:36599069-36600153(-) (10)	NA	Q9FM66	Putative pectate lyase 21	AT5G55720.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201289.1.S1_at	A	A1TS	POPTR_0001s37680	POPTR_0001s37680 (11)	scaffold_1:36683745-36685449(+) (11)	NA	P59941	NAD-dependent deacetylase sirtuin-6	AT5G55760.1	sirtuin 1 	LOC_Os04g20270.2	"transcriptional regulator Sir2 family protein, putative, expressed"	AC235665_38.3	Silent information regulator protein Sir2 AC235665.2 203843-196699 E EGN_Mt090430 200	GO:0006476|protein amino acid deacetylation||GO:0034645|cellular macromolecule biosynthetic process||GO:0006342|chromatin silencing	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides""||GO:0070403|NAD binding||GO:0008270|zinc ion binding"	NA
PtpAffx.201290.1.S1_at	A	A1TS	POPTR_0001s37690	POPTR_0001s37690 (11)	scaffold_1:36703275-36704492(+) (11)	NA	NA	NA	AT5G55820.1	"CONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os09g30070.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201291.1.S1_at	A	A1TS	POPTR_0001s37710	POPTR_0001s37710 (11)	scaffold_1:36731289-36731750(-) (11)	NA	Q9LG26	Poly(A)-specific ribonuclease PARN	AT1G55870.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os04g39260.3	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr7g046600.1	Ribonuclease CAF1 	NA	NA	GO:0005634|nucleus
PtpAffx.201292.1.S1_at	A	A1TS	POPTR_0001s37720	POPTR_0001s37720 (11)	scaffold_1:36736476-36738825(-) (11)	NA	P94464	Ribosomal RNA small subunit methyltransferase B	AT3G13180.1	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein 	LOC_Os09g30100.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr5g103670.1	NusB/RsmB/TIM44 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003723|RNA binding	NA
PtpAffx.201293.1.S1_at	A	A1TS	POPTR_0001s37730	POPTR_0001s37730 (11)	scaffold_1:36797592-36797656(+) (11)	NA	Q8GY23	E3 ubiquitin-protein ligase UPL1	AT1G55860.1	ubiquitin-protein ligase 1 	LOC_Os09g07900.1	"ubiquitin-protein ligase 1, putative, expressed"	Medtr5g075640.1	"HECT; Ubiquitin interacting motif; UBA-like; DUF913, E3 ubiquitin ligase TOM1; "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.201293.1.S1_s_at	A	A1TS	POPTR_0001s37730	POPTR_0001s37730 (11)	scaffold_1:36796992-36797354(+) (11)	NA	Q8GY23	E3 ubiquitin-protein ligase UPL1	AT1G55860.1	ubiquitin-protein ligase 1 	LOC_Os09g07900.1	"ubiquitin-protein ligase 1, putative, expressed"	Medtr5g075640.1	"HECT; Ubiquitin interacting motif; UBA-like; DUF913, E3 ubiquitin ligase TOM1; "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.201294.1.S1_at	A	A1TS	POPTR_0001s37780	POPTR_0001s37780 (11)	scaffold_1:36871035-36871611(+) (11)	NA	Q9C9N6	Protein PLASTID MOVEMENT IMPAIRED 2	AT5G55860.1	Plant protein of unknown function (DUF827) 	LOC_Os12g17310.1	"prefoldin, putative, expressed"	Medtr3g079810.1	I/LWEQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201295.1.S1_s_at	A	A1TS	POPTR_0001s37820	POPTR_0001s37820 (11)	scaffold_1:36904124-36907273(-) (11)	NA	Q32L22	DNA-directed RNA polymerases I and III subunit RPAC1	AT1G60620.1	RNA polymerase I subunit 43 	LOC_Os03g18410.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr3g079830.1	"RNA polymerase, dimerisation "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.201296.1.S1_s_at	A	A2TS	POPTR_0001s37890	POPTR_0001s37890 (11)//POPTR_0001s37840 (10)	scaffold_1:36935877-36936322(+) (10)//scaffold_1:36963653-36964098(+) (11)	NA	Q9SUA4	Oligopeptide transporter 5	AT4G26590.1	oligopeptide transporter 5 	LOC_Os08g38400.1	"oligopeptide transporter, putative, expressed"	Medtr5g103860.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201298.1.S1_at	A	A1TS	POPTR_0001s37860	POPTR_0001s37860 (11)	scaffold_1:36943163-36943517(-) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g01850.1	"pentatricopeptide, putative, expressed"	Medtr3g069190.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2013.1.S1_s_at	A	A1TS	POPTR_0009s07790	POPTR_0009s07790 (11)	scaffold_9:7242964-7243890(+) (11)	NA	Q91348	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase"	AT1G07110.1	"fructose-2,6-bisphosphatase "	LOC_Os05g07130.1	"6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed"	Medtr5g080220.1	"Fructose-2,6-bisphosphatase; "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0006000|fructose metabolic process	GO:0003873|6-phosphofructo-2-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.2013.2.S1_at	A	A1TS	POPTR_0001s28590	POPTR_0001s28590 (11)	scaffold_1:27371502-27372029(+) (11)	NA	Q91348	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase"	AT1G07110.1	"fructose-2,6-bisphosphatase "	LOC_Os05g07130.1	"6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed"	Medtr5g080220.1	"Fructose-2,6-bisphosphatase; "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0006000|fructose metabolic process	GO:0003873|6-phosphofructo-2-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201300.1.S1_at	A	A1TS	POPTR_0001s37920	POPTR_0001s37920 (11)	scaffold_1:36991746-36991881(-) (11)	NA	P48809	Heterogeneous nuclear ribonucleoprotein 27C	AT3G13224.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g38410.3	"RNA recognition motif containing protein, putative, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201300.1.S1_s_at	A	A1TS	POPTR_0001s37920	POPTR_0001s37920 (11)	scaffold_1:36991840-36993108(-) (11)	NA	P48809	Heterogeneous nuclear ribonucleoprotein 27C	AT3G13224.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g38410.3	"RNA recognition motif containing protein, putative, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201301.1.S1_at	A	A1TS	POPTR_0001s37940	POPTR_0001s37940 (11)	scaffold_1:37018105-37020022(-) (11)	NA	Q9H330	Transmembrane protein C9orf5	AT5G55960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g19390.1	expressed protein	Medtr3g079890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201302.1.S1_at	A	A1TS	POPTR_0001s37950	POPTR_0001s37950 (11)	scaffold_1:37024038-37024617(-) (11)	NA	Q9LK50	ABC transporter G family member 26	AT3G13220.1	ABC-2 type transporter family protein 	LOC_Os06g40550.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g103980.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.201303.1.S1_at	A	A1TS	POPTR_0001s37960	POPTR_0001s37960 (11)	scaffold_1:37030729-37031488(+) (11)	NA	B0WTU5	Coiled-coil domain-containing protein 22 homolog	AT1G55830.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530). 	NA	NA	Medtr3g079860.1	Protein of unknown function DUF812 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201304.1.S1_at	A	A1TS	POPTR_0001s37990	POPTR_0001s37990 (11)	scaffold_1:37049056-37049548(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201305.1.S1_at	A	A1TS	POPTR_0001s38020	POPTR_0001s38020 (11)	scaffold_1:37072927-37073731(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.201306.1.S1_at	A	A1TS	POPTR_0001s38030	POPTR_0001s38030 (11)	scaffold_1:37077153-37077480(+) (11)	NA	NA	NA	AT5G55980.1	serine-rich protein-related 	NA	NA	Medtr3g079920.1	"AAA ATPase, central region; Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201307.1.S1_at	A	A1TS	POPTR_0001s38070	POPTR_0001s38070 (11)	scaffold_1:37105276-37105691(+) (11)	NA	NA	NA	AT4G21740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g136820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201308.1.S1_at	A	A1TS	POPTR_0001s38090	POPTR_0001s38090 (11)	scaffold_1:37132486-37132680(+) (11)	NA	Q9FVJ3	ADP-ribosylation factor GTPase-activating protein AGD12	AT4G21160.4	Calcium-dependent ARF-type GTPase activating protein family 	LOC_Os06g40704.3	"stromal membrane-associated protein, putative, expressed"	Medtr4g136810.1	C2; Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.201309.1.S1_at	A	A1TS	POPTR_0001s38110	POPTR_0001s38110 (11)	scaffold_1:37192465-37193482(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201310.1.S1_at	A	A1TS	POPTR_0001s38130	POPTR_0001s38130 (11)	scaffold_1:37218872-37219597(-) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G39330.1	cinnamyl alcohol dehydrogenase 9 	LOC_Os04g15920.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.201311.1.S1_at	A	A1TS	POPTR_0001s38160	POPTR_0001s38160 (11)	scaffold_1:37236509-37237499(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201312.1.S1_at	A	A1TS	POPTR_0001s38180	POPTR_0001s38180 (11)	scaffold_1:37263554-37263884(+) (11)	NA	NA	NA	AT3G15115.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53180.1); Has 47 Blast hits to 47 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201312.1.S1_s_at	A	A1TS	POPTR_0001s38180	POPTR_0001s38180 (11)	scaffold_1:37263181-37263874(+) (11)	NA	NA	NA	AT3G15115.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53180.1); Has 47 Blast hits to 47 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201314.1.S1_at	A	A2TS	POPTR_0001s38190	POPTR_0001s38190 (11)//POPTR_0500s00200 (10)	scaffold_1:37273908-37274480(-) (11)//scaffold_500:12855-13427(-) (10)	NA	NA	NA	AT5G46060.1	"Protein of unknown function, DUF599 "	LOC_Os08g28970.1	expressed protein	Medtr2g018300.1	Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201315.1.S1_s_at	A	A1TS	POPTR_0001s38210	POPTR_0001s38210 (11)	scaffold_1:37283282-37283836(-) (11)	NA	NA	NA	AT3G15095.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9762 Blast hits to 6439 proteins in 764 species: Archae - 77; Bacteria - 1339; Metazoa - 3211; Fungi - 718; Plants - 437; Viruses - 131; Other Eukaryotes - 3849 (source: NCBI BLink). 	LOC_Os06g24540.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201316.1.S1_at	A	A1TS	POPTR_0001s38230	POPTR_0001s38230 (11)	scaffold_1:37306327-37310783(-) (11)	NA	NA	NA	AT3G18380.1	sequence-specific DNA binding transcription factors;sequence-specific DNA binding 	LOC_Os06g29020.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g114620.1	Homeobox 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201316.1.S1_x_at	A	A1TS	POPTR_0001s38230	POPTR_0001s38230 (11)	scaffold_1:37306327-37310830(-) (11)	NA	NA	NA	AT3G18380.1	sequence-specific DNA binding transcription factors;sequence-specific DNA binding 	LOC_Os06g29020.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g114620.1	Homeobox 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201317.1.S1_at	A	A1TS	POPTR_0001s38320	POPTR_0001s38320 (11)	scaffold_1:37407083-37408234(+) (11)	NA	Q6S4P4	Transcription factor RF2b	AT3G58120.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g55150.1	"bZIP transcription factor domain containing protein, expressed"	Medtr2g132450.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.201318.1.S1_at	A	A1TS	POPTR_0001s38340	POPTR_0001s38340 (11)	scaffold_1:37420985-37421333(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201320.1.S1_x_at	A	A1TS	POPTR_0001s38370	POPTR_0001s38370 (11)	scaffold_1:37463501-37463763(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os06g06130.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.201322.1.S1_x_at	A	A1TS	POPTR_0001s38400	POPTR_0001s38400 (10)	scaffold_1:37508148-37509126(-) (10)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os06g06130.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.201323.1.S1_at	A	A1TS	POPTR_0001s38430	POPTR_0001s38430 (10)	scaffold_1:37550997-37551033(+) (10)	NA	NA	NA	AT1G53210.1	sodium/calcium exchanger family protein / calcium-binding EF hand family protein 	LOC_Os02g14980.2	"calcium-binding EF hand family protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.201323.1.S1_s_at	A	A2TS	POPTR_0001s38420	POPTR_0001s38420 (11)//POPTR_0001s38430 (9)	scaffold_1:37537038-37538565(+) (11)//scaffold_1:37549491-37550998(+) (9)	NA	NA	NA	AT1G53210.1	sodium/calcium exchanger family protein / calcium-binding EF hand family protein 	LOC_Os02g14980.1	"calcium-binding EF hand family protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.201324.1.S1_at	A	A1TS	POPTR_0001s38450	POPTR_0001s38450 (11)	scaffold_1:37576872-37577195(+) (11)	NA	NA	NA	AT1G53210.1	sodium/calcium exchanger family protein / calcium-binding EF hand family protein 	LOC_Os02g14980.1	"calcium-binding EF hand family protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.201325.1.S1_at	A	A1TS	POPTR_0001s38460	POPTR_0001s38460 (11)	scaffold_1:37578950-37579506(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201326.1.S1_s_at	A	A1TS	POPTR_0001s38480	POPTR_0001s38480 (11)	scaffold_1:37600938-37601323(-) (11)	NA	Q8LPR5	Transcription factor TCP4	AT3G15030.3	TCP family transcription factor 4 	LOC_Os01g11550.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201327.1.S1_s_at	A	A2TS	POPTR_0013s02840	POPTR_0013s02840 (11)//POPTR_0001s38505 (10)	scaffold_1:37671764-37671925(-) (11)//scaffold_13:1720731-1720892(-) (11)	NA	P60838	Probable disease resistance protein At1g12280	AT1G12280.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_3.1	NB-ARC; AAA ATPase AC225526.7 19758-13755 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201328.1.S1_at	A	A1TS	POPTR_0001s38540	POPTR_0001s38540 (11)	scaffold_1:37706383-37706948(-) (11)	NA	NA	NA	AT1G73160.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g46430.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr8g086410.1	"Glycosyl transferase, group 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201329.1.S1_at	A	A1TS	POPTR_0253s00200	POPTR_0253s00200 (11)	scaffold_253:17440-18428(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20133.1.S1_at	A	A1TS	POPTR_0004s20730	POPTR_0004s20730 (10)	scaffold_4:20159600-20161774(-) (10)	POPTR_0009s16020 (7)	Q9ZVD0	Serrate RNA effector molecule	AT2G27100.1	C2H2 zinc-finger protein SERRATE (SE) 	LOC_Os06g48530.1	"ZOS6-09 - C2H2 zinc finger protein, expressed"	Medtr8g047770.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201330.1.S1_at	A	A1TS	POPTR_0001s38580	POPTR_0001s38580 (11)	scaffold_1:37783701-37784415(+) (11)	NA	NA	NA	AT1G73140.1	Plant protein of unknown function (DUF828) 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr5g090760.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201331.1.S1_at	A	A1TS	POPTR_0001s38590	POPTR_0001s38590 (11)	scaffold_1:37787433-37787940(-) (11)	NA	NA	NA	AT1G17780.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr4g109560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201332.1.S1_at	A	A1TS	POPTR_0001s38600	POPTR_0001s38600 (11)	scaffold_1:37798244-37800408(+) (11)	NA	NA	NA	AT1G53460.1	BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink). 	LOC_Os01g10630.2	expressed protein	Medtr2g091250.1	structural molecule 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201334.1.S1_at	A	A1TS	POPTR_0001s38620	POPTR_0001s38620 (11)	scaffold_1:37806710-37808667(+) (11)	NA	NA	NA	AT1G12790.1	CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g51060.1	"DNA ligase, putative, expressed"	Medtr2g010430.1	"Proteinase inhibitor I25, cystatin; RuvA domain 2-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201335.1.S1_at	A	A1TS	POPTR_0001s38640	POPTR_0001s38640 (11)	scaffold_1:37825100-37825347(-) (11)	NA	Q32P51	Heterogeneous nuclear ribonucleoprotein A1-like 2	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g42820.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201337.1.S1_at	A	A1TS	POPTR_0001s38740	POPTR_0001s38740 (11)	scaffold_1:37928649-37929010(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201338.1.S1_at	A	A1TS	POPTR_0001s38750	POPTR_0001s38750 (11)	scaffold_1:37941739-37942043(-) (11)	NA	NA	NA	AT1G17147.1	VQ motif-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201339.1.S1_at	A	A1TS	POPTR_0001s38760	POPTR_0001s38760 (11)	scaffold_1:38000931-38001062(-) (11)	NA	Q9SQ80	Gibberellin 2-beta-dioxygenase 1	AT1G78440.1	Arabidopsis thaliana gibberellin 2-oxidase 1 	LOC_Os01g55240.1	"gibberellin 2-beta-dioxygenase, putative, expressed"	Medtr2g024600.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201340.1.S1_at	A	A1TS	POPTR_0001s38780	POPTR_0001s38780 (11)	scaffold_1:38040825-38041497(-) (11)	NA	Q797A7	Uncharacterized amino acid permease YfnA	AT2G34960.1	cationic amino acid transporter 5 	LOC_Os01g11160.1	"amino acid permease family protein, putative, expressed"	Medtr4g137890.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201341.1.S1_at	A	A1TS	POPTR_0001s38790	POPTR_0001s38790 (11)	scaffold_1:38065322-38065963(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g39010.1	"heavy metal associated domain containing protein, expressed"	Medtr3g106960.1	"ATFP4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201342.1.S1_at	A	A1TS	POPTR_0001s38800	POPTR_0001s38800 (11)	scaffold_1:38083274-38084554(+) (11)	NA	Q9FPS9	Ubiquitin carboxyl-terminal hydrolase 15	AT1G17110.1	ubiquitin-specific protease 15 	LOC_Os02g14730.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.201344.1.S1_at	A	A1TS	POPTR_0001s38850	POPTR_0001s38850 (11)	scaffold_1:38110059-38110621(+) (11)	NA	Q9LUD6	"Pentatricopeptide repeat-containing protein At3g14580, mitochondrial"	AT3G14580.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g52725.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g018090.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201345.1.S1_at	A	A1TS	POPTR_0001s38880	POPTR_0001s38880 (9)	scaffold_1:38117856-38118228(-) (9)	NA	Q93XX4	C2 domain-containing protein At1g53590	AT1G53590.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g20970.1	"C2 domain containing protein, putative, expressed"	Medtr1g031480.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201345.1.S1_s_at	A	A1TS	POPTR_0001s38880	POPTR_0001s38880 (11)	scaffold_1:38117977-38118322(-) (11)	NA	Q93XX4	C2 domain-containing protein At1g53590	AT1G53590.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g20970.1	"C2 domain containing protein, putative, expressed"	Medtr1g031480.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201346.1.S1_s_at	A	A1TS	POPTR_0001s38890	POPTR_0001s38890 (11)	scaffold_1:38131243-38131706(-) (11)//scaffold_5:16514498-16514961(-) (11)	NA	Q6XKE6	Genome polyprotein	NA	NA	NA	NA	Medtr5g062290.1	RNA-directed DNA polymerase (Reverse transcriptase) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201346.1.S1_x_at	A	A1TS	POPTR_0001s38890	POPTR_0001s38890 (10)	scaffold_1:38131199-38131658(-) (10)	NA	Q6XKE6	Genome polyprotein	NA	NA	NA	NA	Medtr5g062290.1	RNA-directed DNA polymerase (Reverse transcriptase) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201348.1.S1_at	A	A2TS	POPTR_0001s38930	POPTR_0001s38930 (11)//POPTR_0002s04300 (11)	scaffold_1:38189401-38189716(+) (11)//scaffold_2:2694373-2694688(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201349.1.S1_at	A	A1TS	POPTR_0001s38980	POPTR_0001s38980 (11)	scaffold_1:38220901-38222024(-) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT1G78530.1	Protein kinase superfamily protein 	LOC_Os01g14510.1	"BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed"	Medtr8g113060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201349.1.S1_x_at	A	A1TS	POPTR_0001s38980	POPTR_0001s38980 (11)	scaffold_1:38220772-38222040(-) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT1G78530.1	Protein kinase superfamily protein 	LOC_Os01g14510.1	"BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed"	Medtr8g113060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201350.1.S1_at	A	A1TS	POPTR_0001s38990	POPTR_0001s38990 (11)	scaffold_1:38225530-38227304(-) (11)	NA	NA	NA	AT1G17040.1	SH2 domain protein A 	LOC_Os10g41770.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201351.1.S1_s_at	A	A1MS	POPTR_0001s39000	POPTR_0001s39000 (11)	scaffold_1:38235413-38235889(-) (11)	NA	Q9LVQ8	Probable protein phosphatase 2C 80	AT5G66720.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201352.1.S1_at	A	A1TS	POPTR_0001s39010	POPTR_0001s39010 (11)	scaffold_1:38248958-38249397(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201353.1.S1_at	A	A1TS	POPTR_0001s39030	POPTR_0001s39030 (11)	scaffold_1:38270529-38271345(-) (11)	NA	NA	NA	AT1G17030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19000.1	expressed protein	AC235677_33.1	hypothetical protein AC235677.1 140826-144182 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201354.1.S1_at	A	A1TS	POPTR_0001s39040	POPTR_0001s39040 (11)	scaffold_1:38283426-38284318(-) (11)	NA	Q8L8W0	ALA-interacting subunit 5	AT1G79450.1	ALA-interacting subunit 5 	LOC_Os03g02830.1	"cell cycle control protein, putative, expressed"	Medtr2g122470.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.201356.1.S1_s_at	A	A1TS	POPTR_0001s39170	POPTR_0001s39170 (11)	scaffold_1:38368013-38368480(-) (11)	NA	NA	NA	AT3G14750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). 	LOC_Os07g32450.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g071550.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201357.1.S1_at	A	A1TS	POPTR_0001s39180	POPTR_0001s39180 (11)	scaffold_1:38372807-38373162(+) (11)	NA	NA	NA	AT3G14760.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	AC147714_2.1	hypothetical protein AC147714.8 42643-40456 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201358.1.S1_at	A	A1TS	POPTR_0001s39190	POPTR_0001s39190 (11)	scaffold_1:38378809-38380551(-) (11)	NA	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	NA	NA	Medtr5g028210.1	"ankyrin repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201360.1.S1_at	A	A1TS	POPTR_0001s45070	POPTR_0001s45070 (11)	scaffold_1:45379157-45379608(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201362.1.S1_at	A	A1TS	POPTR_0001s47760	POPTR_0001s47760 (11)	scaffold_1:47968656-47969603(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201362.1.S1_x_at	A	A1TS	POPTR_0001s47760	POPTR_0001s47760 (11)	scaffold_1:47968643-47969603(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201365.1.S1_x_at	A	A4TS	POPTR_0001s42470	POPTR_0001s42470 (11)//POPTR_0001s42520 (11)//POPTR_0001s47820 (10)//POPTR_0049s00260 (10)	scaffold_1:42446127-42446368(+) (11)//scaffold_1:42501285-42501526(+) (11)//scaffold_1:48183850-48183938(+) (10)//scaffold_49:167261-167502(+) (11)	POPTR_0001s43690 (6)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201367.1.S1_s_at	A	A2TS	POPTR_0014s08170	POPTR_0014s08170 (11)//POPTR_0366s00220 (10)	scaffold_14:6065854-6066458(-) (11)//scaffold_366:6260-6864(-) (10)	NA	O43913	Origin recognition complex subunit 5	AT4G29910.1	origin recognition complex protein 5 	LOC_Os03g55200.1	"ORC5 - Putative origin recognition complex subunit 5, expressed"	Medtr7g087520.1	"ATORC5/ORC5 ; pr, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201368.1.S1_s_at	A	A5TS	POPTR_0014s06010	POPTR_0176s00210 (11)//POPTR_0014s06010 (11)//POPTR_1353s00210 (11)//POPTR_0366s00200 (11)//POPTR_0176s00230 (10)	scaffold_1353:4955-5411(-) (11)//scaffold_14:4500107-4500455(+) (11)//scaffold_176:21370-21718(+) (11)//scaffold_176:21802-31685(+) (10)//scaffold_366:3107-3455(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201369.1.S1_x_at	A	A1TA	POPTR_0049s00240	POPTR_0049s00240 (11)	scaffold_49:95910-96113(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201370.1.S1_at	A	A2MS	POPTR_0001s47820	POPTR_0001s47820 (11)//POPTR_0049s00220 (9)	scaffold_1:48185518-48185894(+) (11)//scaffold_49:75600-75803(+) (9)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201370.1.S1_x_at	A	A2MS	POPTR_0001s47820	POPTR_0001s47820 (11)//POPTR_0049s00220 (9)	scaffold_1:48185518-48185894(+) (11)//scaffold_49:75600-75803(+) (9)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201372.1.S1_x_at	A	A1TS	POPTR_0049s00220	POPTR_0049s00220 (11)	scaffold_49:73449-73796(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os09g14060.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201373.1.S1_at	A	A1TS	POPTR_0210s00200	POPTR_0210s00200 (11)	scaffold_210:10060-10409(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201374.1.S1_x_at	A	A3TS	POPTR_0001s42470	POPTR_0001s42470 (10)//POPTR_0049s00260 (10)//POPTR_0001s42520 (10)	scaffold_1:42446021-42446312(+) (10)//scaffold_1:42501179-42501470(+) (10)//scaffold_1:43977806-43978097(-) (10)//scaffold_49:167155-167446(+) (10)	POPTR_0001s43690 (8)//POPTR_0001s47820 (6)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201375.1.S1_s_at	A	A1TS	POPTR_0001s43640	POPTR_0001s43640 (11)	scaffold_1:43864160-43864409(+) (11)//scaffold_49:147275-147524(-) (11)//scaffold_49:155235-155484(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201376.1.S1_x_at	A	A2TS	POPTR_0001s43650	POPTR_0001s43650 (11)//POPTR_0049s00210 (10)	scaffold_1:43880926-43881340(-) (11)//scaffold_49:53225-53640(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_3.1	NB-ARC; AAA ATPase AC225526.7 19758-13755 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201377.1.S1_x_at	A	A1TS	POPTR_0001s43660	POPTR_0001s43660 (11)	scaffold_1:43922067-43922108(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201378.1.S1_at	A	A2TS	POPTR_0001s42670	POPTR_0001s42670 (10)//POPTR_0128s00200 (10)	scaffold_1:42698007-42698920(-) (10)//scaffold_128:37415-38318(+) (10)	NA	Q8GT74	NEP1-interacting protein 2	AT3G20395.1	RING/U-box superfamily protein 	LOC_Os10g39770.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr5g100100.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201381.1.S1_at	A	A1TS	POPTR_0001s42680	POPTR_0001s42680 (11)	scaffold_1:42713648-42714167(-) (11)	NA	A2YBX5	Protein kinase G11A	AT3G14370.1	Protein kinase superfamily protein 	LOC_Os03g14840.1	"AGC_PVPK_like_kin82y.8 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g119560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201383.1.S1_s_at	A	A1TS	POPTR_0001s42840	POPTR_0001s42840 (11)	scaffold_1:42863126-42863557(-) (11)	POPTR_0001s42880 (7)	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os01g04070.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr5g094230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.201385.1.S1_at	A	A1TS	POPTR_0001s45220	POPTR_0001s45220 (9)	scaffold_1:45722866-45724065(-) (10)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G00820.1	IQ-domain 17 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201387.1.S1_at	A	A1TS	POPTR_0001s43330	POPTR_0001s43330 (11)	scaffold_1:43381767-43382449(+) (11)	NA	O04893	Alpha-glucosidase	AT5G11720.1	Glycosyl hydrolases family 31  protein 	LOC_Os06g46340.1	"glycosyl hydrolase, family 31, putative, expressed"	AC229699_4.1	"Glycoside hydrolase, family 31 AC229699.6 9352-14882 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201388.1.S1_at	A	A1TS	POPTR_0001s43340	POPTR_0001s43340 (11)	scaffold_1:43387534-43388118(+) (11)	NA	O04893	Alpha-glucosidase	AT5G11720.1	Glycosyl hydrolases family 31  protein 	LOC_Os06g46284.2	"glycosyl hydrolase, family 31, putative, expressed"	AC229699_4.1	"Glycoside hydrolase, family 31 AC229699.6 9352-14882 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.201389.1.S1_at	A	A1TS	POPTR_0001s43350	POPTR_0001s43350 (9)	scaffold_1:43391374-43391967(-) (9)	NA	Q5SPW0	Vacuolar protein sorting-associated protein 54	AT4G19490.2	VPS54 	LOC_Os04g13470.1	expressed protein	NA	NA	"GO:0042147|""retrograde transport, endosome to Golgi"""	GO:0005515|protein binding	NA
PtpAffx.201391.1.S1_at	A	A1TS	POPTR_0001s43380	POPTR_0001s43380 (10)	scaffold_1:43421072-43421654(-) (11)	NA	Q14008	Cytoskeleton-associated protein 5	AT2G35630.1	ARM repeat superfamily protein 	LOC_Os01g60040.1	"HEAT repeat family protein, putative, expressed"	Medtr8g026460.1	VHS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201393.1.S1_at	A	A1TS	POPTR_0001s45130	POPTR_0001s45130 (9)	scaffold_1:43501583-43502084(+) (10)//scaffold_1:45513432-45513933(+) (10)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201394.1.S1_at	A	A1TS	POPTR_0134s00200	POPTR_0134s00200 (11)	scaffold_134:38223-38435(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.201396.1.S1_at	A	A1TS	POPTR_0134s00210	POPTR_0134s00210 (11)	scaffold_134:44922-45426(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201397.1.S1_at	A	A1TS	POPTR_0065s00200	POPTR_0065s00200 (11)	scaffold_65:9213-9459(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr3g076270.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.201399.1.S1_at	A	A1TS	POPTR_0001s45230	POPTR_0001s45230 (10)	scaffold_1:45727367-45728856(-) (10)	NA	NA	NA	AT5G53860.2	embryo defective 2737 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2014.1.A1_at	A	A1TS	POPTR_0005s19050	POPTR_0005s19050 (10)	scaffold_5:17640307-17640421(+) (10)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT5G67500.2	voltage dependent anion channel 2 	LOC_Os03g10510.2	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.201400.1.S1_at	A	A1TS	POPTR_0001s45240	POPTR_0001s45240 (11)	scaffold_1:45733273-45733753(+) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT4G10630.1	Glutaredoxin family protein 	LOC_Os04g33680.1	"glutaredoxin, putative, expressed"	Medtr4g155310.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.201401.1.S1_at	A	A1TS	POPTR_0001s45260	POPTR_0001s45260 (11)	scaffold_1:45793633-45793821(-) (11)	NA	NA	NA	AT1G64700.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g126420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201401.1.S1_s_at	A	A1TS	POPTR_0001s45260	POPTR_0001s45260 (11)	scaffold_1:45793977-45794103(-) (11)	NA	NA	NA	AT1G64700.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g126420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201402.1.S1_at	A	A1TS	POPTR_0001s45270	POPTR_0001s45270 (11)	scaffold_1:45796509-45796919(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201403.1.S1_at	A	A1MS	POPTR_0001s45300	POPTR_0001s45300 (10)	scaffold_1:45820207-45820911(+) (10)	NA	NA	NA	AT1G32810.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g14510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201404.1.S1_x_at	A	A3TS	POPTR_0001s45330	POPTR_0001s45330 (11)//POPTR_0002s14270 (10)//POPTR_0003s11270 (9)	scaffold_1:45845881-45846110(-) (11)//scaffold_2:10567221-10567568(+) (10)//scaffold_3:12139319-12139548(+) (9)	NA	Q7XDC8	"Malate dehydrogenase, cytoplasmic"	AT5G56720.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr8g005780.1	"Malate dehydrogenase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201405.1.S1_at	A	A1TS	POPTR_0001s45340	POPTR_0001s45340 (11)	scaffold_1:45851139-45851518(+) (11)	NA	A2YU42	Cellulose synthase-like protein D2	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.201406.1.S1_at	A	A1TS	POPTR_0001s45380	POPTR_0001s45380 (11)	scaffold_1:45872976-45873476(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201407.1.S1_at	A	A1MS	POPTR_0001s45410	POPTR_0001s45410 (11)	scaffold_1:45896959-45897123(-) (11)	NA	Q9NQZ5	"StAR-related lipid transfer protein 7, mitochondrial"	AT1G64720.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g02910.1	"membrane related protein CP5, putative, expressed"	Medtr3g122780.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201408.1.S1_a_at	A	A1TS	POPTR_0001s45430	POPTR_0001s45430 (11)	scaffold_1:45915547-45915627(+) (11)//scaffold_1:45915958-45916038(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201408.1.S1_x_at	A	A1TS	POPTR_0001s45430	POPTR_0001s45430 (11)	scaffold_1:45915478-45915899(+) (11)//scaffold_1:45915889-45916037(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201409.1.S1_at	A	A1TS	POPTR_0001s45440	POPTR_0001s45440 (11)	scaffold_1:45918333-45918883(+) (11)	NA	NA	NA	AT5G14230.1	"CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). "	LOC_Os02g25960.1	"ankyrin repeat family protein, putative, expressed"	Medtr8g142200.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201410.1.S1_at	A	A1MS	POPTR_0001s45460	POPTR_0001s45460 (10)	scaffold_1:45934681-45935319(+) (10)	NA	O65351	Subtilisin-like protease	AT1G32950.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr4g132770.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201411.1.S1_at	A	A1TS	POPTR_0001s45540	POPTR_0001s45540 (11)	scaffold_1:46041375-46041833(-) (11)	NA	NA	NA	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201412.1.S1_at	A	A1TS	POPTR_0001s45570	POPTR_0001s45570 (11)	scaffold_1:46074464-46075702(-) (11)	NA	O04847	Deacetoxyvindoline 4-hydroxylase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201413.1.S1_at	A	A1TS	POPTR_0001s45580	POPTR_0001s45580 (11)	scaffold_1:46094568-46095385(-) (11)	NA	Q05963	"Naringenin,2-oxoglutarate 3-dioxygenase"	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201414.1.S1_at	A	A1TS	POPTR_0001s45600	POPTR_0001s45600 (11)	scaffold_1:46108972-46112923(-) (11)	NA	Q9ZWQ9	Flavonol synthase/flavanone 3-hydroxylase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201415.1.S1_at	A	A1TS	POPTR_0001s45610	POPTR_0001s45610 (11)	scaffold_1:46136456-46136636(-) (11)	NA	P24397	Hyoscyamine 6-dioxygenase	AT4G10490.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201416.1.S1_at	A	A1TS	POPTR_0001s45630	POPTR_0001s45630 (9)	scaffold_1:46204796-46205359(+) (11)	NA	Q9SIH5	Probable F-box protein At1g60180	AT2G36090.1	F-box family protein 	LOC_Os02g33240.1	"OsFBX51 - F-box domain containing protein, expressed"	Medtr1g086490.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201417.1.S1_at	A	A1TS	POPTR_0001s45650	POPTR_0001s45650 (11)	scaffold_1:46219198-46219376(+) (11)	NA	O82799	B3 domain-containing transcription factor NGA1	AT2G46870.1	AP2/B3-like transcriptional factor family protein 	LOC_Os03g02900.1	"B3 DNA binding domain containing protein, expressed"	AC233685_81.1	Transcriptional factor B3 AC233685.2 344120-341990 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.201417.1.S1_s_at	A	A2TS	POPTR_0001s45650	POPTR_0011s15270 (11)//POPTR_0001s45650 (11)	scaffold_1:46219032-46219301(+) (11)//scaffold_11:17381869-17382138(-) (11)	NA	O82799	B3 domain-containing transcription factor NGA1	AT2G46870.1	AP2/B3-like transcriptional factor family protein 	LOC_Os03g02900.1	"B3 DNA binding domain containing protein, expressed"	AC233685_81.1	Transcriptional factor B3 AC233685.2 344120-341990 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.201417.1.S1_x_at	A	A1TS	POPTR_0001s45650	POPTR_0001s45650 (11)	scaffold_1:46219081-46219376(+) (11)	NA	O82799	B3 domain-containing transcription factor NGA1	AT2G46870.1	AP2/B3-like transcriptional factor family protein 	LOC_Os03g02900.1	"B3 DNA binding domain containing protein, expressed"	AC233685_81.1	Transcriptional factor B3 AC233685.2 344120-341990 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.201418.1.S1_at	A	A1TS	POPTR_0001s45660	POPTR_0001s45660 (11)	scaffold_1:46230153-46231389(-) (11)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201419.1.S1_at	A	A1TS	POPTR_0001s45730	POPTR_0001s45730 (11)	scaffold_1:46275225-46275953(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G30340.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os04g38430.2	"nodulin, putative, expressed"	Medtr1g046330.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.201420.1.S1_at	A	A1TS	POPTR_0001s45740	POPTR_0001s45740 (11)	scaffold_1:46281178-46281762(-) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os12g39330.1	"AP2 domain containing protein, expressed"	Medtr6g013450.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.201421.1.S1_at	A	A1TS	POPTR_0001s45750	POPTR_0001s45750 (11)	scaffold_1:46292526-46292950(+) (11)	NA	P49793	Nuclear pore complex protein Nup98	AT1G10390.2	Nucleoporin autopeptidase 	LOC_Os12g06890.1	"OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed"	Medtr5g105600.1	"Peptidase S59, nucleoporin "	GO:0006810|transport	NA	GO:0005643|nuclear pore
PtpAffx.201422.1.S1_at	A	A1TS	POPTR_0001s45770	POPTR_0001s45770 (11)	scaffold_1:46298416-46300304(-) (11)	NA	Q8N5I4	Dehydrogenase/reductase SDR family member on chromosome X	AT5G15940.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g17750.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g010560.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201423.1.S1_at	A	A1TS	POPTR_0001s45790	POPTR_0001s45790 (11)	scaffold_1:46309160-46309656(+) (11)	NA	A3C6D7	Actin-2	AT5G09810.1	actin 7 	LOC_Os10g36650.1	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201426.1.S1_at	A	A1TS	POPTR_0001s45850	POPTR_0001s45850 (11)	scaffold_1:46351755-46351840(+) (11)	NA	Q9C884	Probable methyltransferase PMT18	AT1G33170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g01450.1	"methyltransferase, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.201426.1.S1_s_at	A	A1TS	POPTR_0001s45850	POPTR_0001s45850 (11)	scaffold_1:46351163-46351742(+) (11)	POPTR_0011s15070 (6)	Q9C884	Probable methyltransferase PMT18	AT1G33170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g01450.1	"methyltransferase, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.201427.1.S1_at	A	A1TS	POPTR_0001s45870	POPTR_0001s45870 (11)	scaffold_1:46373151-46373650(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201428.1.S1_at	A	A1TS	POPTR_0001s45880	POPTR_0001s45880 (11)	scaffold_1:46387922-46388438(-) (11)	NA	NA	NA	AT1G33250.1	Protein of unknown function (DUF604) 	LOC_Os10g37260.1	"fringe-related protein, putative, expressed"	Medtr5g008160.1	Fringe-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201429.1.S1_at	A	A1TS	POPTR_0001s45890	POPTR_0001s45890 (11)	scaffold_1:46395507-46395995(-) (11)	NA	P14133	L-ascorbate oxidase	AT4G39830.1	Cupredoxin superfamily protein 	LOC_Os09g20090.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.201430.1.S1_at	A	A1TS	POPTR_0001s45940	POPTR_0001s45940 (11)	scaffold_1:46446047-46446320(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39080.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.201430.1.S1_s_at	A	A1TS	POPTR_0001s45940	POPTR_0001s45940 (11)	scaffold_1:46445831-46446483(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39080.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.201431.1.S1_at	A	A1TS	POPTR_0001s45960	POPTR_0001s45960 (11)	scaffold_1:46471598-46471980(+) (11)	NA	Q05963	"Naringenin,2-oxoglutarate 3-dioxygenase"	AT1G14130.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g39980.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr5g025070.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201431.1.S1_s_at	A	A1TS	POPTR_0001s45960	POPTR_0001s45960 (11)	scaffold_1:46471345-46471742(+) (11)	NA	Q05963	"Naringenin,2-oxoglutarate 3-dioxygenase"	AT1G14130.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g39980.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr5g025070.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201432.1.S1_at	A	A1TS	POPTR_0001s45980	POPTR_0001s45980 (11)	scaffold_1:46481444-46481980(-) (11)	NA	Q55FG3	Putative vacuolar protein sorting-associated protein 13C	AT5G24740.1	Protein of unknown function (DUF1162) 	LOC_Os08g02350.1	expressed protein	Medtr2g007360.1	C-5 cytosine-specific DNA methylase; Vacuolar protein sorting-associated protein 	GO:0008104|protein localization	NA	NA
PtpAffx.201433.1.S1_at	A	A1TS	POPTR_0001s45990	POPTR_0001s45990 (11)	scaffold_1:46501902-46503399(-) (11)	NA	NA	NA	AT5G24740.1	Protein of unknown function (DUF1162) 	LOC_Os08g02354.1	expressed protein	Medtr2g007300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201434.1.S1_at	A	A1TS	POPTR_0001s46020	POPTR_0001s46020 (9)	scaffold_1:46527023-46527474(+) (11)	NA	P16313	Nodulin-21	AT3G43660.1	Vacuolar iron transporter (VIT) family protein 	LOC_Os04g59020.1	"integral membrane protein, putative, expressed"	Medtr1g125450.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201436.1.S1_at	A	A1TS	POPTR_0001s46050	POPTR_0001s46050 (11)	scaffold_1:46535803-46536705(-) (11)	NA	NA	NA	AT1G20925.1	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	CU179634_11.1	Auxin Efflux Carrier CU179634.6 45127-49222 H EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.201438.1.S1_at	A	A1TS	POPTR_0001s46080	POPTR_0001s46080 (11)	scaffold_1:46560544-46560812(-) (11)	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.201439.1.S1_at	A	A1TS	POPTR_0001s46140	POPTR_0001s46140 (11)	scaffold_1:46607647-46608201(+) (11)	NA	NA	NA	AT5G65950.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g48380.1	expressed protein	Medtr8g087200.1	ABC transporter related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201440.1.S1_at	A	A1TS	POPTR_0001s46180	POPTR_0001s46180 (11)	scaffold_1:46627769-46628354(+) (11)	NA	Q9LM20	"Putative pumilio homolog 8, chloroplastic"	AT1G22240.1	pumilio 8 	LOC_Os12g31000.1	"pumilio-family RNA binding repeat domain containing protein, expressed"	Medtr5g072550.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.201441.1.S1_s_at	A	A1TS	POPTR_0001s46190	POPTR_0001s46190 (11)	scaffold_1:46630540-46630594(-) (11)	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201441.1.S1_x_at	A	A1TS	POPTR_0001s46190	POPTR_0001s46190 (11)	scaffold_1:46630336-46630664(-) (11)	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201442.1.S1_at	A	A1TS	POPTR_0001s46230	POPTR_0001s46230 (11)	scaffold_1:46654365-46654964(+) (11)	NA	NA	NA	AT2G13350.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	NA	NA	Medtr1g087340.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201443.1.S1_at	A	A1TS	POPTR_0001s46240	POPTR_0001s46240 (11)	scaffold_1:46655502-46655819(-) (11)	NA	Q6NVR9	ATPase family AAA domain-containing protein 3	AT5G16930.1	AAA-type ATPase family protein 	LOC_Os02g46990.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g107260.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.201444.1.S1_at	A	A1TS	POPTR_0001s46250	POPTR_0001s46250 (11)	scaffold_1:46668011-46668583(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201445.1.S1_at	A	A1TS	POPTR_0001s46260	POPTR_0001s46260 (11)	scaffold_1:46672794-46673261(+) (11)	NA	Q5BPS3	F-box protein DOR	AT2G31470.1	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr3g005260.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201446.1.S1_at	A	A1TS	POPTR_0001s46380	POPTR_0001s46380 (11)	scaffold_1:46783188-46783680(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G23530.1	carboxyesterase 18 	LOC_Os07g44890.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr6g071230.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.201447.1.S1_at	A	A1TS	POPTR_0001s46410	POPTR_0001s46410 (11)	scaffold_1:46801289-46801861(-) (11)	NA	NA	NA	AT2G17870.1	cold shock domain protein 3 	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.201448.1.S1_at	A	A1TS	POPTR_0001s46420	POPTR_0001s46420 (11)	scaffold_1:46809265-46810265(-) (11)	NA	Q9SA76	"Pentatricopeptide repeat-containing protein At1g30610, chloroplastic"	AT1G30610.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os01g48380.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g101620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201449.1.S1_at	A	A1TS	POPTR_0001s46430	POPTR_0001s46430 (11)	scaffold_1:46817280-46818773(-) (11)	NA	Q8H0W2	Histone deacetylase 9	AT3G44680.1	histone deacetylase 9 	LOC_Os04g33480.1	"histone deacetylase, putative, expressed"	Medtr4g073130.1	Histone deacetylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201451.1.S1_at	A	A1TS	POPTR_0001s46460	POPTR_0001s46460 (11)	scaffold_1:46831551-46832454(+) (11)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT3G25690.3	Hydroxyproline-rich glycoprotein family protein 	LOC_Os08g03560.2	"chloroplast unusual positioning protein, putative, expressed"	Medtr1g020430.1	"chloroplast unusual positioning 1B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201451.1.S1_s_at	A	A2TS	POPTR_0001s46460	POPTR_0011s16000 (11)//POPTR_0001s46460 (11)	scaffold_1:46831117-46832845(+) (11)//scaffold_11:17980721-17982376(+) (11)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT3G25690.3	Hydroxyproline-rich glycoprotein family protein 	LOC_Os08g03560.2	"chloroplast unusual positioning protein, putative, expressed"	Medtr1g020430.1	"chloroplast unusual positioning 1B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201452.1.S1_at	A	A1TS	POPTR_0001s46490	POPTR_0001s46490 (11)	scaffold_1:46862642-46863037(+) (11)	NA	Q9SA80	Probable WRKY transcription factor 14	AT1G30650.1	WRKY DNA-binding protein 14 	LOC_Os04g50920.1	"OsWRKY37 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088890.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.201453.1.S1_at	A	A1MS	POPTR_0001s46500	POPTR_0001s46500 (11)	scaffold_1:46876782-46877800(+) (11)	NA	NA	NA	AT4G20760.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os12g41590.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201454.1.S1_at	A	A1MS	POPTR_0001s46500	POPTR_0001s46500 (10)	scaffold_1:46878318-46879748(+) (10)	NA	NA	NA	AT4G20760.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os12g41590.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201455.1.S1_at	A	A1MS	POPTR_0001s46510	POPTR_0001s46510 (9)	scaffold_1:46880703-46881027(-) (11)	NA	P10975	"Non-specific lipid-transfer protein C, cotyledon-specific isoform"	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201456.1.S1_at	A	A1TS	POPTR_0001s46530	POPTR_0001s46530 (11)	scaffold_1:46909960-46910587(-) (11)	NA	Q84RD0	Transcription factor bHLH53	AT2G34820.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os12g31430.1	helix-loop-helix DNA-binding domain containing protein	AC233682_19.1	Helix-loop-helix DNA-binding AC233682.2 73932-72796 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.201457.1.S1_at	A	A1TS	POPTR_0001s46540	POPTR_0001s46540 (11)	scaffold_1:46918013-46918349(-) (11)	NA	O64885	Protein BCCIP homolog	AT2G44510.1	CDK inhibitor P21 binding protein 	LOC_Os03g63690.1	"BCCIP, putative, expressed"	Medtr3g142570.1	"Protein BCCIP homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201457.1.S1_s_at	A	A1TS	POPTR_0001s46540	POPTR_0001s46540 (11)	scaffold_1:46917031-46917856(-) (11)	NA	O64885	Protein BCCIP homolog	AT2G44510.1	CDK inhibitor P21 binding protein 	LOC_Os03g63690.1	"BCCIP, putative, expressed"	Medtr3g142570.1	"Protein BCCIP homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201458.1.S1_at	A	A1TS	POPTR_0001s46560	POPTR_0001s46560 (11)	scaffold_1:46934160-46936573(+) (11)	NA	P03692	DNA primase/helicase	AT1G30680.1	toprim domain-containing protein 	LOC_Os06g45980.1	"toprim domain-containing protein, putative, expressed"	Medtr5g106820.1	TOPRIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201459.1.S1_at	A	A1TA	POPTR_0001s46690	POPTR_0001s46690 (10)	scaffold_1:47105214-47105742(-) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G01980.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.20146.1.S1_at	A	A1TS	POPTR_0006s07740	POPTR_0006s07740 (11)	scaffold_6:5663467-5663894(+) (11)	NA	Q6Z2W3	Auxin response factor 5	AT5G20730.2	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os02g04810.1	"auxin response factor 5, putative, expressed"	Medtr4g161090.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.201460.1.S1_at	A	A1TS	POPTR_0001s46720	POPTR_0001s46720 (10)	scaffold_1:47125369-47126242(+) (11)	NA	P93479	Reticuline oxidase	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.201461.1.S1_at	A	A1TS	POPTR_0001s46790	POPTR_0001s46790 (11)	scaffold_1:47194885-47195408(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20860.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr3g017130.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.201462.1.S1_at	A	A1TS	POPTR_0001s46820	POPTR_0001s46820 (11)	scaffold_1:47218299-47219040(+) (11)	NA	Q94F40	GDSL esterase/lipase At1g28600	AT1G28600.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os11g31940.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019090.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.201464.1.S1_at	A	A1TS	POPTR_0001s46850	POPTR_0001s46850 (11)	scaffold_1:47227465-47228105(+) (11)	NA	Q9LSB8	Putative pentatricopeptide repeat-containing protein At3g15930	AT3G15930.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g26070.1	"pentatricopeptide, putative, expressed"	Medtr3g069190.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201465.1.S1_at	A	A1TS	POPTR_0001s46860	POPTR_0001s46860 (11)	scaffold_1:47228450-47229117(-) (11)	NA	NA	NA	AT4G20880.1	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) 	NA	NA	AC147501_24.1	"Putative transcription factor, AC147501.9 100411-98848 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201465.1.S1_s_at	A	A1TS	POPTR_0001s46860	POPTR_0001s46860 (11)	scaffold_1:47228467-47229034(-) (11)	NA	NA	NA	AT4G20880.1	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) 	NA	NA	AC147501_24.1	"Putative transcription factor, AC147501.9 100411-98848 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201466.1.S1_at	A	A1TS	POPTR_0001s46880	POPTR_0001s46880 (11)	scaffold_1:47244152-47244566(-) (11)	NA	Q6K5P9	Putative germin-like protein 2-2	AT5G39190.1	germin-like protein 2 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr6g005250.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.201467.1.S1_at	A	A1TS	POPTR_0001s46890	POPTR_0001s46890 (10)	scaffold_1:47250857-47251384(+) (11)	NA	Q6K5Q0	Putative germin-like protein 2-1	AT3G05950.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr6g005250.1	Germin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201468.1.S1_at	A	A1TS	POPTR_0001s46930	POPTR_0001s46930 (11)	scaffold_1:47288662-47289595(+) (11)	NA	Q9LU15	Histidine-containing phosphotransfer protein 4	AT3G16360.2	HPT phosphotransmitter 4 	LOC_Os05g09410.1	"histidine-containing phosphotransfer protein 4, putative, expressed"	Medtr2g122150.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.201469.1.S1_at	A	A1TS	POPTR_0001s46950	POPTR_0001s46950 (9)	scaffold_1:47299937-47300738(+) (11)	NA	Q0D673	Probable protein phosphatase 2C 62	AT2G34740.1	Protein phosphatase 2C family protein 	LOC_Os07g32380.1	"protein phosphatase 2C, putative, expressed"	Medtr2g008900.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201471.1.S1_at	A	A1TS	POPTR_0001s46970	POPTR_0001s46970 (11)	scaffold_1:47307977-47309167(-) (11)	NA	NA	NA	AT4G20900.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g36740.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g129970.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201472.1.S1_at	A	A1TS	POPTR_0001s46980	POPTR_0001s46980 (11)	scaffold_1:47311807-47312972(-) (11)	NA	Q4R3W5	UPF0486 protein C1orf59 homolog	AT4G20910.2	double-stranded RNA binding protein-related / DsRBD protein-related 	LOC_Os07g06970.1	"HEN1, putative, expressed"	NA	NA	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.201474.1.S1_at	A	A1TS	POPTR_0001s47080	POPTR_0001s47080 (11)	scaffold_1:47395251-47395456(+) (11)	NA	NA	NA	AT2G25320.1	TRAF-like family protein 	NA	NA	Medtr3g137580.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201474.1.S1_x_at	A	A1TS	POPTR_0001s47080	POPTR_0001s47080 (11)	scaffold_1:47395251-47395479(+) (11)	NA	NA	NA	AT2G25320.1	TRAF-like family protein 	NA	NA	Medtr3g137580.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201475.1.S1_at	A	A1TS	POPTR_0001s47090	POPTR_0001s47090 (11)	scaffold_1:47397536-47398024(-) (11)	NA	Q99685	Monoglyceride lipase	AT5G14980.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g21560.1	"esterase/lipase/thioesterase family protein, putative, expressed"	Medtr1g120940.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201476.1.S1_at	A	A1TS	POPTR_0001s47120	POPTR_0001s47120 (11)	scaffold_1:47433970-47434278(+) (11)	NA	Q9SA72	Probable receptor-like protein kinase At1g30570	AT1G30570.1	hercules receptor kinase 2 	LOC_Os04g52860.1	"TKL_IRAK_CrRLK1L-1.9 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr2g129760.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201477.1.S1_at	A	A1TS	POPTR_0001s47150	POPTR_0001s47150 (11)	scaffold_1:47453508-47454151(+) (11)	NA	C0LGR3	Probable LRR receptor-like serine/threonine-protein kinase At4g26540	AT5G56040.2	Leucine-rich receptor-like protein kinase family protein 	LOC_Os08g38560.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g080170.1	"Protein kinase; Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.201478.1.S1_at	A	A1TS	POPTR_0001s47160	POPTR_0001s47160 (11)	scaffold_1:47455459-47457277(-) (11)	NA	P37861	Regulatory protein recX	AT3G13226.1	regulatory protein RecX family protein 	LOC_Os04g57230.1	"regulatory protein RecX family protein, putative, expressed"	Medtr5g104180.1	Regulatory protein RecX 	GO:0044260|cellular macromolecule metabolic process||GO:0006282|regulation of DNA repair||GO:0006974|response to DNA damage stimulus	NA	NA
PtpAffx.201479.1.S1_at	A	A1TS	POPTR_0001s47170	POPTR_0001s47170 (11)	scaffold_1:47460623-47461092(-) (11)	NA	NA	NA	AT2G04220.1	Plant protein of unknown function (DUF868) 	LOC_Os02g10530.1	expressed protein	Medtr5g104190.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201480.1.S1_at	A	A1TS	POPTR_0001s47180	POPTR_0001s47180 (11)	scaffold_1:47463475-47463974(-) (11)	NA	O81635	Kinesin-4	AT3G44730.1	kinesin-like protein 1 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr3g080190.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.201481.1.S1_at	A	A1TS	POPTR_0001s47220	POPTR_0001s47220 (11)	scaffold_1:47493063-47493612(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201482.1.S1_x_at	A	A1TS	POPTR_0001s47230	POPTR_0001s47230 (11)	scaffold_1:47494863-47495342(+) (11)	NA	Q84W65	"SufE-like protein, chloroplastic"	AT4G26500.1	chloroplast sulfur E 	LOC_Os09g09790.1	"Fe-S metabolism associated domain containing protein, expressed"	AC233100_36.1	BolA-like protein; Fe-S metabolism associated SufE AC233100.6 121683-123592 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201483.1.S1_at	A	A1TS	POPTR_0001s47260	POPTR_0001s47260 (11)	scaffold_1:47512380-47513124(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g16070.1	NB-ARC domain containing protein	Medtr3g076800.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201484.1.S1_at	A	A1TS	POPTR_0001s47310	POPTR_0001s47310 (11)	scaffold_1:47555223-47556114(+) (11)	NA	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os02g10520.1	"OsSub12 - Putative Subtilisin homologue, expressed"	Medtr8g109220.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201485.1.S1_at	A	A1TS	POPTR_0001s47350	POPTR_0001s47350 (11)	scaffold_1:47581259-47581857(+) (11)	NA	Q1LUT1	Enhancer of mRNA-decapping protein 4	AT3G13300.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g080420.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201486.1.S1_at	A	A1TS	POPTR_0001s47370	POPTR_0001s47370 (11)	scaffold_1:47595356-47596596(+) (11)	NA	Q8BJ03	Cytochrome c oxidase assembly protein COX15 homolog	AT5G56090.1	cytochrome c oxidase 15 	LOC_Os08g38720.1	"cytochrome c oxidase assembly protein COX15, putative, expressed"	Medtr5g104460.1	Cytochrome oxidase assembly 	GO:0006461|protein complex assembly	NA	GO:0016020|membrane
PtpAffx.201487.1.S1_at	A	A1TS	POPTR_0001s47430	POPTR_0001s47430 (11)	scaffold_1:47631772-47632291(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT5G56110.1	myb domain protein 103 	LOC_Os04g39470.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201488.1.S1_at	A	A1TS	POPTR_0001s47440	POPTR_0001s47440 (11)	scaffold_1:47637862-47639083(-) (11)	NA	Q5SSW2	Proteasome activator complex subunit 4	AT3G13330.1	proteasome activating protein 200 	LOC_Os06g19730.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201489.1.S1_at	A	A1TS	POPTR_0001s47440	POPTR_0001s47440 (11)	scaffold_1:47640761-47641566(-) (11)	NA	Q5SSW2	Proteasome activator complex subunit 4	AT3G13330.1	proteasome activating protein 200 	LOC_Os06g19730.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201490.1.S1_s_at	A	A1MS	POPTR_0001s47530	POPTR_0001s47530 (11)	scaffold_1:47690223-47690907(+) (11)	NA	P45816	SEC14 cytosolic factor	AT1G55690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os08g25310.1	"phosphatidylinositol transfer, putative, expressed"	Medtr3g016810.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201491.1.S1_at	A	A1TS	POPTR_0001s47560	POPTR_0001s47560 (11)	scaffold_1:47703788-47704337(+) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g36350.1	"pentatricopeptide, putative, expressed"	Medtr5g020540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201492.1.S1_at	A	A1TS	POPTR_0001s47580	POPTR_0001s47580 (11)	scaffold_1:47716266-47716692(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr3g016950.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201494.1.S1_at	A	A1TS	POPTR_0001s47600	POPTR_0001s47600 (11)	scaffold_1:47720575-47721221(-) (11)	NA	Q8GXA4	WPP domain-interacting protein 1	AT4G26455.1	WPP domain interacting protein 1 	LOC_Os09g30350.1	expressed protein	Medtr3g017150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201495.1.S1_at	A	A1TS	POPTR_0001s47610	POPTR_0001s47610 (11)	scaffold_1:47740999-47741538(+) (11)	NA	NA	NA	AT5G56220.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g38970.1	"transmembrane receptor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201497.1.S1_at	A	A1TS	POPTR_0001s47650	POPTR_0001s47650 (11)	scaffold_1:47800372-47802537(-) (11)	NA	P0CB21	Uncharacterized protein At4g26450	AT4G26450.1	unknown protein; Has 614 Blast hits to 492 proteins in 137 species: Archae - 0; Bacteria - 94; Metazoa - 255; Fungi - 76; Plants - 69; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). 	LOC_Os02g34500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201499.1.S1_s_at	A	A1MS	POPTR_0001s47660	POPTR_0001s47660 (11)	scaffold_1:47812096-47812246(-) (11)	NA	Q8RXR2	Chloride channel protein CLC-f	AT1G55620.2	chloride channel F 	LOC_Os08g38980.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr5g106870.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.20150.1.S1_at	A	A1TS	POPTR_0009s02100	POPTR_0009s02100 (10)	scaffold_9:2708645-2709051(-) (10)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr2g104740.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.20150.1.S1_s_at	A	A1TS	POPTR_0009s02100	POPTR_0009s02100 (11)	scaffold_9:2708632-2708970(-) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr2g104740.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.201501.1.S1_at	A	A1TS	POPTR_0001s47720	POPTR_0001s47720 (11)	scaffold_1:47884007-47884367(-) (11)	NA	Q9ZWC5	Scarecrow-like protein 18	AT1G55580.1	GRAS family transcription factor 	LOC_Os02g10360.1	"MONOCULM 1, putative"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201505.1.S1_s_at	A	A1TS	POPTR_0002s00270	POPTR_0002s00270 (11)	scaffold_2:43912-44220(+) (11)	POPTR_0010s18040 (6)	NA	NA	AT2G02650.1	Ribonuclease H-like superfamily protein 	NA	NA	Medtr5g068610.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201506.1.S1_at	A	A1TS	POPTR_0002s00310	POPTR_0002s00310 (11)	scaffold_2:59724-60181(+) (11)	NA	NA	NA	AT5G25070.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g40450.1	"uvrB/uvrC motif family protein, expressed"	AC151525_29.1	hypothetical protein AC151525.18 152102-148754 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.201507.1.S1_at	A	A1TS	POPTR_0002s00320	POPTR_0002s00320 (11)	scaffold_2:75057-77152(+) (11)	NA	Q08D57	Histone-lysine N-methyltransferase SETD1B	AT5G42400.1	SET domain protein 25 	LOC_Os12g41900.1	"SET domain containing protein, expressed"	Medtr4g089540.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201508.1.S1_at	A	A1TS	POPTR_0002s00330	POPTR_0002s00330 (11)	scaffold_2:84612-84878(+) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT1G76660.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). 	LOC_Os01g01390.4	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201508.1.S1_s_at	A	A1TS	POPTR_0002s00330	POPTR_0002s00330 (10)	scaffold_2:84564-85145(+) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT1G76660.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). 	LOC_Os01g01390.4	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20151.2.S1_a_at	A	A1TS	POPTR_0014s05560	POPTR_0014s05560 (11)	scaffold_14:4155507-4156291(+) (11)	NA	NA	NA	AT3G24100.1	Uncharacterised protein family SERF 	LOC_Os05g33700.1	4F5 protein family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201510.1.S1_at	A	A1TS	POPTR_0002s00380	POPTR_0002s00380 (10)	scaffold_2:101421-109953(-) (10)	NA	Q6DFB8	Tetratricopeptide repeat protein 37	AT1G76630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g40050.1	"tetratricopeptide repeat domain containing protein, expressed"	AC151525_24.1	Tetratricopeptide-like helical AC151525.18 129753-118532 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201511.1.S1_at	A	A1TS	POPTR_0002s00390	POPTR_0002s00390 (10)	scaffold_2:111278-112595(-) (11)	NA	Q8LEZ8	AP-1 complex subunit sigma-1	AT2G17380.1	associated protein 19 	LOC_Os03g57040.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr5g106580.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.201512.1.S1_at	A	A1TS	POPTR_0002s00400	POPTR_0002s00400 (11)	scaffold_2:113463-115365(-) (11)	NA	NA	NA	AT1G76620.1	"Protein of unknown function, DUF547 "	LOC_Os09g32010.1	"ternary complex factor MIP1, putative, expressed"	AC233653_9.1	Protein of unknown function DUF547 AC233653.2 46326-50755 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201513.1.S1_at	A	A1TS	POPTR_0002s00420	POPTR_0002s00420 (11)	scaffold_2:142077-142393(-) (11)	NA	NA	NA	AT1G21010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76600.1); Has 206 Blast hits to 206 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g09970.1	expressed protein	CU179634_28.1	Protein of unknown function DUF547 CU179634.6 104418-109619 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201515.1.S1_at	A	A1TS	POPTR_0002s00470	POPTR_0002s00470 (11)	scaffold_2:178920-180640(+) (11)	NA	Q54CV5	Probable inactive serine/threonine-protein kinase bub1	AT2G33560.1	BUB1-related (BUB1: budding uninhibited by benzymidazol 1) 	LOC_Os02g10020.1	"Mad3/BUB1 homology region 1 domain containing protein, expressed"	CU179634_19.1	"spindle checkpoint protein-related, putative CU179634.6 79089-74963 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201516.1.S1_at	A	A1TS	POPTR_0002s00480	POPTR_0002s00480 (9)	scaffold_2:183535-185456(+) (11)	NA	Q9FMY5	Splicing factor U2af small subunit B	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.201517.1.S1_at	A	A1TS	POPTR_0002s00530	POPTR_0002s00530 (11)	scaffold_2:203358-204825(-) (11)	NA	NA	NA	AT1G20925.1	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	CU179634_11.1	Auxin Efflux Carrier CU179634.6 45127-49222 H EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.201518.1.S1_at	A	A1TS	POPTR_0002s00560	POPTR_0002s00560 (11)	scaffold_2:226258-226581(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT1G76500.1	Predicted AT-hook DNA-binding family protein 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	CU179634_7.1	"AGF1 ; transcription facto, putative CU179634.6 27665-28510 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201521.1.S1_at	A	A1TS	POPTR_0002s00620	POPTR_0002s00620 (11)	scaffold_2:273159-274633(+) (11)	NA	Q84JG2	SWI/SNF complex subunit SWI3B	AT2G33610.1	switch subunit 3 	LOC_Os02g10060.1	"SWIRM domain containing protein, expressed"	Medtr3g159850.1	SWIRM; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201522.1.S1_at	A	A1TS	POPTR_0002s00690	POPTR_0002s00690 (11)	scaffold_2:305789-306573(+) (11)	NA	NA	NA	AT1G20870.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr2g007400.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201523.1.S1_at	A	A1TS	POPTR_0002s00700	POPTR_0002s00700 (11)	scaffold_2:310791-310831(+) (11)	NA	Q9S735	Probable inorganic phosphate transporter 1-9	AT1G76430.1	phosphate transporter 1;9 	LOC_Os06g21950.1	"inorganic phosphate transporter, putative, expressed"	Medtr3g106620.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.201524.1.S1_at	A	A1MS	POPTR_0002s00730	POPTR_0002s00730 (9)	scaffold_2:329859-331148(+) (9)	NA	Q9S851	Protein CUP-SHAPED COTYLEDON 3	AT1G76420.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g40030.1	"CUP-SHAPED COTYLEDON3, putative, expressed"	Medtr3g159900.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.201525.1.S1_at	A	A1TS	POPTR_0002s00785	POPTR_0002s00785 (9)	scaffold_2:365528-366261(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201526.1.S1_at	A	A1TS	POPTR_0002s00800	POPTR_0002s00800 (11)	scaffold_2:372570-374088(-) (11)	NA	O22815	MLO-like protein 5	AT2G33670.1	Seven transmembrane MLO family protein 	LOC_Os10g39520.1	"MLO domain containing protein, putative, expressed"	Medtr3g160010.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.201527.1.S1_at	A	A1TS	POPTR_0002s00810	POPTR_0002s00810 (11)	scaffold_2:377052-377689(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201528.1.S1_at	A	A1TS	POPTR_0002s00820	POPTR_0002s00820 (11)	scaffold_2:378950-379445(-) (11)	NA	Q6DR03	Probable S-acyltransferase At2g33640	AT2G33640.1	DHHC-type zinc finger family protein 	LOC_Os04g49560.1	"zinc finger family protein, putative, expressed"	Medtr3g160020.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.201529.1.S1_at	A	A1TS	POPTR_0002s00830	POPTR_0002s00830 (11)	scaffold_2:385601-386758(-) (11)	NA	O49873	MLO protein homolog 1	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.2	"MLO domain containing protein, putative, expressed"	Medtr3g160040.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.20153.1.S1_a_at	A	A1TS	POPTR_0014s17780	POPTR_0014s17780 (11)	scaffold_14:14121608-14122244(+) (11)	NA	O64888	"Ribose-phosphate pyrophosphokinase 5, chloroplastic"	AT2G44530.1	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.20153.1.S1_at	A	A1TS	POPTR_0014s17780	POPTR_0014s17780 (9)	scaffold_14:14122313-14122952(+) (9)	NA	O64888	"Ribose-phosphate pyrophosphokinase 5, chloroplastic"	AT2G44530.1	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.201530.1.S1_at	A	A1TS	POPTR_0002s00850	POPTR_0002s00850 (11)	scaffold_2:395504-395649(+) (11)	POPTR_0005s27540 (8)	P32361	Serine/threonine-protein kinase/endoribonuclease IRE1	AT2G17520.1	Endoribonuclease/protein kinase IRE1-like 	LOC_Os07g28820.1	"ribonuclease 2-5A family protein, expressed"	Medtr5g024470.1	Protein kinase; PUG 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006397|mRNA processing	"GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0016891|""endoribonuclease activity, producing 5'-phosphomonoesters"""	NA
PtpAffx.201530.1.S1_x_at	A	A1TS	POPTR_0002s00850	POPTR_0002s00850 (11)	scaffold_2:395504-395706(+) (11)	POPTR_0005s27540 (7)	P32361	Serine/threonine-protein kinase/endoribonuclease IRE1	AT2G17520.1	Endoribonuclease/protein kinase IRE1-like 	LOC_Os07g28820.1	"ribonuclease 2-5A family protein, expressed"	Medtr5g024470.1	Protein kinase; PUG 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006397|mRNA processing	"GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0016891|""endoribonuclease activity, producing 5'-phosphomonoesters"""	NA
PtpAffx.201531.1.S1_at	A	A1TS	POPTR_0002s00870	POPTR_0002s00870 (11)	scaffold_2:403971-404273(-) (11)	NA	Q9C8E7	Glutamate receptor 3.3	AT1G42540.1	glutamate receptor 3.3 	LOC_Os02g02540.1	"glutamate receptor, putative, expressed"	Medtr3g160070.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.201532.1.S1_at	A	A1TS	POPTR_0002s00880	POPTR_0002s00880 (11)	scaffold_2:415541-415925(+) (11)	NA	P93006	Probable protein phosphatase 2C 27	AT2G33700.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr3g160100.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201533.1.S1_at	A	A1TS	POPTR_0002s00890	POPTR_0002s00890 (11)	scaffold_2:416487-418503(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201534.1.S1_s_at	A	A1TS	POPTR_0002s00900	POPTR_0002s00900 (11)	scaffold_2:422132-422615(+) (11)	NA	Q9FII1	F-box/kelch-repeat protein At5g42360	AT5G42360.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os09g38300.1	"OsFBK20 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g160130.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201535.1.S1_s_at	A	A1TS	POPTR_0002s00910	POPTR_0002s00910 (11)	scaffold_2:424419-424979(-) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os12g17900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.201537.1.S1_s_at	A	A1TS	POPTR_0002s00940	POPTR_0002s00940 (11)	scaffold_2:452717-452751(-) (11)//scaffold_2:9092709-9092743(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g009400.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.201538.1.S1_s_at	A	A7TS	POPTR_0002s00920	POPTR_0002s12290 (11)//POPTR_0002s12270 (11)//POPTR_0002s00940 (11)//POPTR_0002s12280 (11)//POPTR_0002s12260 (11)//POPTR_1233s00200 (11)//POPTR_0002s00920 (11)	scaffold_1233:4934-4992(-) (11)//scaffold_2:439114-439172(-) (11)//scaffold_2:455044-455102(-) (11)//scaffold_2:9090192-9090250(+) (11)//scaffold_2:9099272-9099330(+) (11)//scaffold_2:9108097-9108155(+) (11)//scaffold_2:9123968-9124026(+) (11)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os11g36090.1	"receptor kinase, putative, expressed"	Medtr7g009400.1	"Tyrosine protein kinase, active site "	NA	GO:0005515|protein binding	NA
PtpAffx.201539.1.S1_s_at	A	A1TS	POPTR_0002s00930	POPTR_0002s00930 (11)	scaffold_2:450618-451355(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201541.1.S1_s_at	A	A1TS	POPTR_0002s12250	POPTR_0002s12250 (10)	scaffold_2:9085770-9085803(+) (10)//scaffold_2:9117543-9117576(+) (10)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g17710.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr5g078130.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.201542.1.S1_at	A	A1TS	POPTR_0002s00970	POPTR_0002s00970 (11)	scaffold_2:479480-479968(+) (11)	NA	Q3YK19	Fanconi anemia group J protein homolog	AT1G20720.1	RAD3-like DNA-binding helicase protein 	LOC_Os09g37920.1	"helicase, putative, expressed"	AC234703_2.1	"Xeroderma pigmentosum group D protein; ATP-dependent helicase, DEAH-box; ; AC234703.1 26378-15197 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004003|ATP-dependent DNA helicase activity	NA
PtpAffx.201543.1.S1_at	A	A1TS	POPTR_0002s01010	POPTR_0002s01010 (11)	scaffold_2:501037-501705(+) (11)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT1G20670.1	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr5g100440.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201543.1.S1_s_at	A	A1TS	POPTR_0002s01010	POPTR_0002s01010 (11)	scaffold_2:500946-501592(+) (11)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT1G20670.1	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr5g100440.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201545.1.S1_at	A	A1TS	POPTR_0002s01030	POPTR_0002s01030 (11)	scaffold_2:515930-516788(+) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT1G20650.1	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201546.1.S1_at	A	A1TS	POPTR_0002s01040	POPTR_0002s01040 (11)	scaffold_2:523434-524281(+) (11)	NA	P46573	"Protein kinase APK1B, chloroplastic"	AT1G76360.1	Protein kinase superfamily protein 	LOC_Os04g47620.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201547.1.S1_at	A	A1MS	POPTR_0002s01050	POPTR_0002s01050 (10)	scaffold_2:552882-554610(+) (11)	NA	P56941	Niemann-Pick C1 protein	AT1G42470.1	Patched family protein 	LOC_Os04g47590.1	"niemann-Pick C1 protein precursor, putative, expressed"	Medtr5g106700.1	Sterol-sensing 5TM box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201548.1.S1_at	A	A1TS	POPTR_0002s01060	POPTR_0002s01060 (11)	scaffold_2:555481-556053(-) (11)	NA	Q9LE38	Protein NLP4	AT1G20640.2	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201549.1.S1_at	A	A1TS	POPTR_0002s01080	POPTR_0002s01080 (11)	scaffold_2:563973-567466(-) (11)//scaffold_2:567437-567500(-) (9)	NA	P17598	Catalase isozyme 1	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
PtpAffx.201549.1.S1_s_at	A	A1TS	POPTR_0002s01080	POPTR_0002s01080 (11)	scaffold_2:563939-568440(-) (11)	NA	P17598	Catalase isozyme 1	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
PtpAffx.201550.1.S1_at	A	A1TS	POPTR_0002s01090	POPTR_0002s01090 (11)	scaffold_2:576703-577189(-) (11)	NA	Q681N2	U-box domain-containing protein 15	AT5G42340.1	Plant U-Box 15 	LOC_Os08g37570.1	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.201552.1.S1_at	A	A1TS	POPTR_0002s01170	POPTR_0002s01170 (11)	scaffold_2:619316-619411(+) (11)	NA	C5D6U5	2-succinylbenzoate--CoA ligase	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008840.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.201552.1.S1_x_at	A	A1TS	POPTR_0002s01170	POPTR_0002s01170 (11)	scaffold_2:619316-619513(+) (11)	NA	C5D6U5	2-succinylbenzoate--CoA ligase	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008840.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.201554.1.S1_at	A	A1TS	POPTR_0002s01190	POPTR_0002s01190 (11)	scaffold_2:628384-628965(+) (11)	NA	Q2KIG3	Carboxypeptidase B2	AT5G42320.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os02g02710.1	"zinc carboxypeptidase family protein, putative, expressed"	NA	NA	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004181|metallocarboxypeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.201555.1.S1_at	A	A1TS	POPTR_0002s01200	POPTR_0002s01200 (11)	scaffold_2:632894-633948(-) (11)	NA	Q8L844	"Pentatricopeptide repeat-containing protein At5g42310, mitochondrial"	AT5G42310.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g36390.1	"PPR repeat containing protein, expressed"	Medtr4g155160.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201557.1.S1_at	A	A1TS	POPTR_0002s01230	POPTR_0002s01230 (11)	scaffold_2:649279-649786(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G76270.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr5g106640.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201557.1.S1_x_at	A	A1TS	POPTR_0002s01230	POPTR_0002s01230 (11)	scaffold_2:649181-649786(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G76270.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr5g106640.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201558.1.S1_at	A	A1TS	POPTR_0002s01260	POPTR_0002s01260 (10)	scaffold_2:659485-659855(+) (11)	NA	NA	NA	AT1G42430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). 	LOC_Os03g04100.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201559.1.S1_at	A	A1TS	POPTR_0002s01260	POPTR_0002s01260 (11)	scaffold_2:661161-663169(+) (11)	NA	NA	NA	AT1G42430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). 	LOC_Os03g04100.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201560.1.S1_at	A	A1TS	POPTR_0002s01280	POPTR_0002s01280 (11)	scaffold_2:670139-670745(-) (11)	NA	NA	NA	AT3G51020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66370.1); Has 19 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g125270.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201561.1.S1_at	A	A1TS	POPTR_0002s01290	POPTR_0002s01290 (11)	scaffold_2:677779-677955(+) (11)	NA	NA	NA	AT1G76240.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os06g50980.1	conserved hypothetical protein	Medtr5g023250.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201562.1.S1_at	A	A1TS	POPTR_0002s01300	POPTR_0002s01300 (11)	scaffold_2:687424-687576(+) (11)	NA	NA	NA	AT1G20530.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37520.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201563.1.S1_at	A	A1TS	POPTR_0002s01330	POPTR_0002s01330 (10)	scaffold_2:705515-706067(-) (10)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os11g06110.1	"carrier, putative, expressed"	Medtr3g162490.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201564.1.S1_at	A	A1TS	POPTR_0002s01340	POPTR_0002s01340 (11)	scaffold_2:708217-708774(+) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43980.1	"carrier, putative"	Medtr4g096070.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201565.1.S1_at	A	A1TS	POPTR_0002s01350	POPTR_0002s01350 (11)	scaffold_2:711638-712096(+) (11)	NA	A8MQA2	Non-specific lipid-transfer protein 13	AT5G44265.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201566.1.S1_at	A	A1TS	POPTR_0002s01380	POPTR_0002s01380 (11)	scaffold_2:719697-719906(+) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43980.1	"carrier, putative"	Medtr4g096070.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201566.1.S1_s_at	A	A1TS	POPTR_0002s01360	POPTR_0002s01360 (11)	scaffold_2:715463-715759(+) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43980.1	"carrier, putative"	Medtr4g096070.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201567.1.S1_at	A	A1TS	POPTR_0002s01400	POPTR_0002s01400 (11)	scaffold_2:734768-735325(+) (11)	NA	NA	NA	AT1G76210.1	Arabidopsis protein of unknown function (DUF241) 	NA	NA	Medtr5g023320.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201568.1.S1_at	A	A1TS	POPTR_0002s01450	POPTR_0002s01450 (11)	scaffold_2:764440-764869(+) (11)	NA	Q8VXV7	Lysine-specific histone demethylase 1 homolog 1	AT1G62830.1	LSD1-like 1 	LOC_Os02g51880.1	"amine oxidase, putative, expressed"	Medtr3g076130.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.201569.1.S1_at	A	A1TS	POPTR_0002s01470	POPTR_0002s01470 (10)	scaffold_2:775010-775795(+) (10)	NA	Q304B9	Neutral ceramidase	AT2G38010.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr3g111420.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201570.1.S1_at	A	A1TS	POPTR_0002s01490	POPTR_0002s01490 (11)	scaffold_2:797674-797863(+) (11)	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G42220.1	Ubiquitin-like superfamily protein 	LOC_Os07g31540.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201571.1.S1_at	A	A1TS	POPTR_0002s01540	POPTR_0002s01540 (9)	scaffold_2:821716-821915(+) (11)	NA	P48147	Prolyl endopeptidase	AT1G76140.1	Prolyl oligopeptidase family protein 	LOC_Os01g01830.1	"OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.201572.1.S1_s_at	A	A1TS	POPTR_0002s01530	POPTR_0002s01530 (11)	scaffold_2:819608-819852(-) (11)	NA	P48147	Prolyl endopeptidase	AT1G76140.1	Prolyl oligopeptidase family protein 	LOC_Os01g01830.1	"OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.201574.1.S1_s_at	A	A1TS	POPTR_0002s01580	POPTR_0002s01580 (11)	scaffold_2:853139-853757(+) (11)	POPTR_0005s26830 (6)	Q6CC39	tRNA pseudouridine synthase 1	AT1G20370.1	Pseudouridine synthase family protein 	LOC_Os02g44810.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr8g145890.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.201575.1.S1_at	A	A1TS	POPTR_0002s01590	POPTR_0002s01590 (11)	scaffold_2:855377-855849(+) (11)	NA	Q3EBZ2	F-box protein SKIP23	AT2G17030.1	F-box family protein with a domain of unknown function (DUF295) 	LOC_Os04g08510.1	"OsFBX117 - F-box domain containing protein, expressed"	Medtr5g039340.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201576.1.S1_at	A	A1TS	POPTR_0002s01600	POPTR_0002s01600 (11)	scaffold_2:857770-858383(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201577.1.S1_at	A	A1TS	POPTR_0002s01620	POPTR_0002s01620 (11)	scaffold_2:866029-866599(-) (11)	NA	Q9FND6	"Pentatricopeptide repeat-containing protein At5g40410, mitochondrial"	AT5G40410.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g27880.1	"tetratricopeptide-like helical, putative"	Medtr3g030450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201578.1.S1_at	A	A1TS	POPTR_0002s01630	POPTR_0002s01630 (11)	scaffold_2:872475-873820(+) (11)	NA	P27626	Senescence-associated protein DIN1	AT4G35770.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os06g50930.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr5g023140.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201579.1.S1_at	A	A1TS	POPTR_0002s01640	POPTR_0002s01640 (9)	scaffold_2:874444-874814(-) (9)	NA	Q9BV90	U11/U12 small nuclear ribonucleoprotein 25 kDa protein	AT3G07860.1	Ubiquitin-like superfamily protein 	LOC_Os04g56770.1	conserved hypothetical protein	Medtr4g101300.1	"U11/U12 small nuclear ribonucleoprotein 25 kDa protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201580.1.S1_at	A	A1TS	POPTR_0002s01670	POPTR_0002s01670 (11)	scaffold_2:887449-887933(-) (11)	NA	Q9SYM1	Uncharacterized mscS family protein At1g78610	AT1G53470.1	mechanosensitive channel of small conductance-like 4 	LOC_Os04g47320.1	"uncharacterized mscS family protein, putative, expressed"	Medtr1g143150.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201581.1.S1_at	A	A1TS	POPTR_0002s01690	POPTR_0002s01690 (11)	scaffold_2:904696-905598(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201582.1.S1_at	A	A1TS	POPTR_0002s01710	POPTR_0002s01710 (11)	scaffold_2:913094-913863(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g08470.1	OsFBX116 - F-box domain containing protein	Medtr5g039290.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201583.1.S1_at	A	A1TS	POPTR_0002s01720	POPTR_0002s01720 (11)	scaffold_2:918836-919372(+) (11)	NA	P50134	Ornithine decarboxylase	NA	NA	LOC_Os09g37120.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr3g157420.1	Orn/DAP/Arg decarboxylase 2 	NA	GO:0003824|catalytic activity	NA
PtpAffx.201584.1.S1_at	A	A1TS	POPTR_0002s01800	POPTR_0002s01800 (11)	scaffold_2:964013-964078(-) (11)	NA	Q9SGS5	Uncharacterized protein At1g76070	AT1G76070.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os09g37080.1	expressed protein	Medtr3g157310.1	"Uncharacterized protein At1g76070, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201584.1.S1_s_at	A	A1TS	POPTR_0002s01800	POPTR_0002s01800 (11)	scaffold_2:964200-964610(-) (11)	NA	Q9SGS5	Uncharacterized protein At1g76070	AT1G76070.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os09g37080.1	expressed protein	Medtr3g157310.1	"Uncharacterized protein At1g76070, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201585.1.S1_at	A	A1TS	POPTR_0002s01820	POPTR_0002s01820 (10)	scaffold_2:970036-971010(+) (10)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT1G20270.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr5g022950.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201586.1.S1_at	A	A1TS	POPTR_0002s01860	POPTR_0002s01860 (11)	scaffold_2:995467-996086(+) (11)	NA	Q8GT74	NEP1-interacting protein 2	AT2G17730.1	NEP-interacting protein 2 	LOC_Os10g39770.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr5g022920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201587.1.S1_at	A	A1TS	POPTR_0002s01930	POPTR_0002s01930 (11)	scaffold_2:1034995-1035363(+) (11)	NA	Q06364	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G20200.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os08g43640.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.201589.1.S1_at	A	A1TS	POPTR_0002s01980	POPTR_0002s01980 (11)	scaffold_2:1051977-1052546(-) (11)	NA	Q6DYE5	UPF0496 protein At1g20180	AT1G20180.1	Protein of unknown function (DUF677) 	LOC_Os03g05440.1	"DUF677 domain containing protein, putative, expressed"	Medtr1g031880.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20159.1.S1_s_at	A	A1TS	POPTR_0001s16060	POPTR_0001s16060 (11)	scaffold_1:12874594-12875554(+) (11)	NA	NA	NA	AT1G05780.1	Vacuolar ATPase assembly integral membrane protein VMA21-like domain 	LOC_Os04g52300.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201590.1.S1_at	A	A1TS	POPTR_0002s02010	POPTR_0002s02010 (11)	scaffold_2:1078371-1078458(+) (11)	NA	O65351	Subtilisin-like protease	AT1G20160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30458.1	"subtilisin-like protease, putative, expressed"	Medtr3g139400.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.201591.1.S1_at	A	A1TS	POPTR_0002s02030	POPTR_0002s02030 (11)	scaffold_2:1084711-1085284(-) (11)	NA	Q94CH6	GDSL esterase/lipase EXL3	AT1G75900.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g64170.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g031720.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.201592.1.S1_at	A	A1TS	POPTR_0002s02050	POPTR_0002s02050 (11)	scaffold_2:1101943-1102636(-) (11)	NA	NA	NA	AT4G35070.1	SBP (S-ribonuclease binding protein) family protein 	NA	NA	Medtr3g163480.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201593.1.S1_at	A	A1TS	POPTR_0002s02060	POPTR_0002s02060 (11)	scaffold_2:1109906-1111257(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201594.1.S1_at	A	A1TS	POPTR_0002s02090	POPTR_0002s02090 (11)	scaffold_2:1132044-1132279(+) (11)	NA	Q2HJG5	Vacuolar protein sorting-associated protein 35	AT1G75850.1	VPS35 homolog B 	LOC_Os03g58700.1	"vacuolar protein sorting-associated protein 35, putative, expressed"	Medtr1g031540.1	Vacuolar protein sorting-associated protein 35 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201594.1.S1_s_at	A	A1TS	POPTR_0002s02090	POPTR_0002s02090 (11)	scaffold_2:1131243-1132312(+) (11)	NA	Q2HJG5	Vacuolar protein sorting-associated protein 35	AT1G75850.1	VPS35 homolog B 	LOC_Os03g58700.1	"vacuolar protein sorting-associated protein 35, putative, expressed"	Medtr1g031540.1	Vacuolar protein sorting-associated protein 35 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201595.1.S1_at	A	A1TS	POPTR_0002s02100	POPTR_0002s02100 (11)	scaffold_2:1133277-1133659(-) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.201596.1.S1_at	A	A1TS	POPTR_0002s02110	POPTR_0002s02110 (11)	scaffold_2:1139224-1139771(-) (11)	NA	Q9C7F8	ABC transporter B family member 13	AT1G27940.1	P-glycoprotein 13 	LOC_Os04g38570.1	"multidrug resistance protein, putative, expressed"	Medtr1g031500.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.201597.1.S1_at	A	A1TS	POPTR_0002s02140	POPTR_0002s02140 (11)	scaffold_2:1178073-1178988(+) (11)	NA	Q9SYQ8	Receptor protein kinase CLAVATA1	AT1G75820.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g56270.2	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr4g096420.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.201598.1.S1_s_at	A	A1TS	POPTR_0002s02150	POPTR_0002s02150 (11)	scaffold_2:1194061-1194455(+) (11)	NA	NA	NA	AT4G24200.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os06g42490.1	expressed protein	Medtr1g031440.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.201599.1.S1_at	A	A1TS	POPTR_0002s02160	POPTR_0002s02160 (11)	scaffold_2:1196337-1198115(-) (11)	NA	Q9ZRZ8	DEAD-box ATP-dependent RNA helicase 28	AT4G16630.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os12g29660.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g067120.1	"Helicase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20160.1.A1_at	A	A1TS	POPTR_0006s12780	POPTR_0006s12780 (10)	scaffold_6:9940887-9942492(-) (10)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G03330.2	Cysteine proteinases superfamily protein 	LOC_Os03g64219.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201601.1.S1_at	A	A1TS	POPTR_0002s02180	POPTR_0002s02180 (11)	scaffold_2:1207469-1208739(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201602.1.S1_at	A	A1TS	POPTR_0002s02190	POPTR_0002s02190 (9)	scaffold_2:1210768-1210816(-) (9)	NA	P50699	Thaumatin-like protein	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201602.1.S1_s_at	A	A1TS	POPTR_0002s02190	POPTR_0002s02190 (11)	scaffold_2:1210562-1210743(-) (11)	NA	P50699	Thaumatin-like protein	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201602.1.S1_x_at	A	A1TS	POPTR_0002s02190	POPTR_0002s02190 (11)	scaffold_2:1210581-1211027(-) (11)	NA	P50699	Thaumatin-like protein	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201603.1.S1_at	A	A1TS	POPTR_0002s02200	POPTR_0002s02200 (11)	scaffold_2:1222000-1222071(-) (11)	NA	P83332	Thaumatin-like protein 1	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201603.1.S1_x_at	A	A1TS	POPTR_0002s02200	POPTR_0002s02200 (11)	scaffold_2:1221979-1222316(-) (11)	NA	P83332	Thaumatin-like protein 1	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201604.1.S1_at	A	A1MS	POPTR_0002s02210	POPTR_0002s02210 (10)	scaffold_2:1228836-1230590(-) (10)	NA	NA	NA	AT4G24175.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g24410.1	"kinesin heavy chain isolog, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201605.1.S1_at	A	A1TS	POPTR_0002s02260	POPTR_0002s02260 (11)	scaffold_2:1257119-1257904(+) (11)	NA	Q8VXX5	Monocopper oxidase-like protein SKS1	AT1G75790.1	SKU5  similar 18 	LOC_Os08g05820.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.201607.1.S1_at	A	A1MS	POPTR_0002s02320	POPTR_0002s02320 (9)	scaffold_2:1311198-1311989(+) (10)	NA	Q8GUG9	U-box domain-containing protein 11	AT3G06880.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g12930.1	"U-box domain containing protein, expressed"	Medtr1g112060.1	U box; Armadillo-like helical; 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.201608.1.S1_at	A	A1TS	POPTR_0002s02460	POPTR_0002s02460 (11)	scaffold_2:1390168-1391390(+) (11)	NA	NA	NA	AT1G75720.2	Plant protein of unknown function (DUF827) 	LOC_Os04g02650.1	expressed protein	Medtr3g156320.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20161.1.A1_a_at	A	A2TS	POPTR_0001s17550	POPTR_0003s05730 (11)//POPTR_0001s17550 (11)	scaffold_1:14330493-14330653(-) (11)//scaffold_3:7114323-7114484(+) (11)	NA	NA	NA	AT3G15550.1	unknown protein; Has 25732 Blast hits to 16979 proteins in 961 species: Archae - 144; Bacteria - 1801; Metazoa - 12681; Fungi - 1868; Plants - 912; Viruses - 94; Other Eukaryotes - 8232 (source: NCBI BLink). 	LOC_Os01g08150.1	expressed protein	Medtr2g123560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20161.1.A1_at	A	A1TS	POPTR_0003s05730	POPTR_0003s05730 (11)	scaffold_3:7114161-7114674(+) (11)	NA	NA	NA	AT3G15550.1	unknown protein; Has 25732 Blast hits to 16979 proteins in 961 species: Archae - 144; Bacteria - 1801; Metazoa - 12681; Fungi - 1868; Plants - 912; Viruses - 94; Other Eukaryotes - 8232 (source: NCBI BLink). 	LOC_Os01g08150.1	expressed protein	Medtr2g123560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201610.1.S1_at	A	A1TS	POPTR_0002s02490	POPTR_0002s02490 (11)	scaffold_2:1407680-1409011(+) (11)	NA	Q54UB1	tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6	AT2G45730.1	eukaryotic initiation factor 3 gamma subunit family protein 	LOC_Os04g02150.2	"tRNA methyltransferase, putative, expressed"	Medtr1g030970.1	"Eukaryotic initiation factor 3, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.201610.1.S1_s_at	A	A1TS	POPTR_0002s02490	POPTR_0002s02490 (11)	scaffold_2:1407717-1409861(+) (11)	NA	Q54UB1	tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6	AT2G45730.1	eukaryotic initiation factor 3 gamma subunit family protein 	LOC_Os04g02150.2	"tRNA methyltransferase, putative, expressed"	Medtr1g030970.1	"Eukaryotic initiation factor 3, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.201611.1.S1_at	A	A1TS	POPTR_0002s02500	POPTR_0002s02500 (11)	scaffold_2:1414654-1415871(+) (11)	NA	Q16254	Transcription factor E2F4	AT1G47870.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os02g33430.1	"E2F family transcription factor protein, putative, expressed"	Medtr3g156310.1	Transcription factor E2F/dimerisation partner (TDP) 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
PtpAffx.201612.1.S1_at	A	A1TS	POPTR_0002s02570	POPTR_0002s02570 (11)	scaffold_2:1465323-1465792(-) (11)	NA	Q9FQ03	5'-3' exoribonuclease 3	AT1G75660.1	5'-3' exoribonuclease 3 	LOC_Os01g65220.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr4g079110.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.201613.1.S1_at	A	A1TS	POPTR_0002s02570	POPTR_0002s02570 (11)	scaffold_2:1466000-1468548(-) (11)	NA	Q9FQ03	5'-3' exoribonuclease 3	AT1G75660.1	5'-3' exoribonuclease 3 	LOC_Os01g65220.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr4g079110.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.201614.1.S1_at	A	A1TS	POPTR_0002s02640	POPTR_0002s02640 (11)	scaffold_2:1560942-1561736(-) (11)	NA	NA	NA	AT3G27230.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g04680.2	expressed protein	Medtr3g094290.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.201616.1.S1_at	A	A1TS	POPTR_0002s02860	POPTR_0002s02860 (11)	scaffold_2:1754957-1755348(+) (11)	NA	Q6Z690	Lysine-specific histone demethylase 1 homolog 1	AT4G16310.1	LSD1-like 3 	LOC_Os10g38850.1	"amine oxidase, putative, expressed"	Medtr1g028330.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.201617.1.S1_at	A	A1TS	POPTR_0002s02860	POPTR_0002s02860 (11)	scaffold_2:1758186-1758626(+) (11)	NA	Q6Z690	Lysine-specific histone demethylase 1 homolog 1	AT4G16310.1	LSD1-like 3 	LOC_Os10g38850.1	"amine oxidase, putative, expressed"	Medtr1g028330.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.201617.1.S1_s_at	A	A2TS	POPTR_0002s02860	POPTR_0002s02860 (11)//POPTR_0005s25670 (11)	scaffold_2:1758080-1758586(+) (11)//scaffold_5:23883101-23883607(-) (11)	NA	Q6Z690	Lysine-specific histone demethylase 1 homolog 1	AT4G16310.1	LSD1-like 3 	LOC_Os10g38850.1	"amine oxidase, putative, expressed"	Medtr1g028330.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.201618.1.S1_at	A	A1TS	POPTR_0002s02890	POPTR_0002s02890 (11)	scaffold_2:1779113-1779655(-) (11)	NA	C0LGS2	Probable LRR receptor-like serine/threonine-protein kinase At4g36180	AT1G75640.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g48760.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g154000.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.201620.1.S1_at	A	A1TS	POPTR_0002s02910	POPTR_0002s02910 (11)	scaffold_2:1789755-1790494(-) (11)	NA	Q6S001	Kinesin-related protein 11	AT2G21300.2	ATP binding microtubule motor family protein 	LOC_Os08g43400.2	"kinesin motor domain containing protein, expressed"	Medtr4g097240.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.201621.1.S1_at	A	A1TS	POPTR_0002s02930	POPTR_0002s02930 (11)	scaffold_2:1797315-1797885(-) (11)	NA	Q9FRI5	Pentatricopeptide repeat-containing protein At1g25360	AT1G25360.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g39910.1	"pentatricopeptide repeat domain containing protein, putative"	Medtr1g087270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201622.1.S1_at	A	A1TS	POPTR_0002s02960	POPTR_0002s02960 (11)	scaffold_2:1811201-1812390(-) (11)	NA	NA	NA	AT3G49990.1	unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). 	LOC_Os03g25620.1	"LTV1, putative, expressed"	Medtr4g024070.1	Low temperature viability protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201623.1.S1_at	A	A1TS	POPTR_0002s02980	POPTR_0002s02980 (11)	scaffold_2:1833277-1836473(-) (11)	NA	Q99L90	Microspherule protein 1	AT3G54350.3	Forkhead-associated (FHA) domain-containing protein  	LOC_Os03g58640.1	"FHA domain containing protein, putative, expressed"	Medtr3g154090.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201624.1.S1_at	A	A1TS	POPTR_0002s02990	POPTR_0002s02990 (9)	scaffold_2:1842477-1843826(-) (11)	NA	P23706	Floral homeotic protein DEFICIENS	AT3G54340.1	K-box region and MADS-box transcription factor family protein  	LOC_Os06g49840.2	"OsMADS16 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g154110.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.201625.1.S1_at	A	A1TS	POPTR_0002s03000	POPTR_0002s03000 (11)	scaffold_2:1860731-1861597(+) (11)	NA	NA	NA	AT1G75520.1	SHI-related sequence 5 	LOC_Os06g49830.1	"SHI, putative, expressed"	Medtr1g028540.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201626.1.S1_at	A	A1TS	POPTR_0002s03010	POPTR_0002s03010 (11)	scaffold_2:1876839-1877522(+) (11)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT2G21410.1	vacuolar proton ATPase A2 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.201627.1.S1_at	A	A1TS	POPTR_0002s03090	POPTR_0002s03090 (9)	scaffold_2:1921926-1922681(-) (10)	NA	Q9LQZ2	Dehydration-responsive element-binding protein 2D	AT1G75490.1	Integrase-type DNA-binding superfamily protein 	LOC_Os08g45110.1	"AP2 domain containing protein, expressed"	Medtr1g028580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.201628.1.S1_at	A	A1TS	POPTR_0002s03110	POPTR_0002s03110 (11)	scaffold_2:1930200-1931283(-) (11)	NA	A7SWD3	UPF0559 protein v1g247787	AT1G06060.1	LisH and RanBPM domains containing protein 	LOC_Os01g56820.1	"AGAP000951-PA, putative, expressed"	Medtr1g024890.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201629.1.S1_at	A	A1TS	POPTR_0002s03120	POPTR_0002s03120 (11)	scaffold_2:1933991-1935690(+) (11)	NA	P25776	Oryzain alpha chain	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os05g43230.1	"oryzain alpha chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.201632.1.S1_at	A	A1TS	POPTR_0002s03160	POPTR_0002s03160 (11)	scaffold_2:1956065-1956650(+) (11)	NA	Q9FXH1	Pentatricopeptide repeat-containing protein At1g19720	AT1G19720.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os03g59264.1	"calreticulin family protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201633.1.S1_s_at	A	A1TS	POPTR_0002s03180	POPTR_0002s03180 (11)	scaffold_2:1960566-1961216(+) (11)	NA	P82859	Agglutinin	AT1G19715.3	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.3	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201634.1.S1_at	A	A1TS	POPTR_0002s03190	POPTR_0002s03190 (11)	scaffold_2:1974995-1976584(+) (11)	NA	Q67YU0	Cytokinin dehydrogenase 5	AT1G75450.1	cytokinin oxidase 5 	LOC_Os01g56810.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr4g118430.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
PtpAffx.201636.1.S1_at	A	A1TS	POPTR_0002s03230	POPTR_0002s03230 (11)	scaffold_2:1986002-1986863(-) (11)	NA	Q1PFD1	BEL1-like homeodomain protein 11	AT1G75430.1	BEL1-like homeodomain 11 	LOC_Os12g43950.4	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201637.1.S1_at	A	A1TS	POPTR_0002s03260	POPTR_0002s03260 (11)	scaffold_2:2006721-2007407(+) (11)	NA	Q96512	Peroxidase 9	AT1G44970.1	Peroxidase superfamily protein 	LOC_Os01g15810.1	"peroxidase precursor, putative, expressed"	Medtr1g028830.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.201638.1.S1_at	A	A1TS	POPTR_0002s03350	POPTR_0002s03350 (11)	scaffold_2:2069756-2070254(+) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G27620.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g28474.1	"transferase family protein, putative, expressed"	Medtr3g094520.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.201639.1.S1_at	A	A1TS	POPTR_0002s03380	POPTR_0002s03380 (9)	scaffold_2:2094702-2096393(+) (9)	NA	Q9SFZ3	Transcription factor bHLH110	AT1G27660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01600.1	"ethylene-responsive protein related, putative, expressed"	Medtr2g122580.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201640.1.S1_at	A	A1TS	POPTR_0002s03410	POPTR_0002s03410 (11)	scaffold_2:2112728-2113417(-) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT3G50930.1	cytochrome BC1 synthesis 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr5g020890.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.201642.1.S1_at	A	A1TS	POPTR_0002s03440	POPTR_0002s03440 (11)	scaffold_2:2131437-2132596(+) (11)	NA	Q0J185	Abscisic acid 8'-hydroxylase 3	AT1G19630.1	"cytochrome P450, family 722, subfamily A, polypeptide 1 "	LOC_Os05g01120.1	"cytochrome P450, putative, expressed"	Medtr8g092860.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.201643.1.S1_at	A	A1TS	POPTR_0002s03460	POPTR_0002s03460 (11)	scaffold_2:2147046-2147242(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006952|defense response	NA	NA
PtpAffx.201644.1.S1_at	A	A1TS	POPTR_0002s03480	POPTR_0002s03480 (11)	scaffold_2:2159458-2161179(+) (11)	NA	P55233	"Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic"	AT1G27680.1	ADPGLC-PPase large subunit 	LOC_Os07g13980.1	"glucose-1-phosphate adenylyltransferase large subunit, putative, expressed"	Medtr4g095980.1	Protein kinase; ADP-glucose pyrophosphorylase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.201645.1.S1_at	A	A1TS	POPTR_0002s03490	POPTR_0002s03490 (10)	scaffold_2:2162401-2162955(-) (11)	NA	Q0JKM9	"Mannan endo-1,4-beta-mannosidase 1"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr5g020810.1	"Glycoside hydrolase, catalytic core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201646.1.S1_at	A	A1TS	POPTR_0002s03510	POPTR_0002s03510 (11)	scaffold_2:2177475-2177805(+) (11)	NA	Q43814	"Ornithine carbamoyltransferase, chloroplastic"	AT1G75330.1	ornithine carbamoyltransferase 	LOC_Os02g47590.1	"ornithine carbamoyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201647.1.S1_at	A	A1TS	POPTR_0002s03520	POPTR_0002s03520 (10)	scaffold_2:2185659-2186168(-) (10)	NA	NA	NA	AT1G75310.1	auxin-like 1 protein 	LOC_Os01g44310.2	"dnaJ domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201648.1.S1_at	A	A1TS	POPTR_0002s03570	POPTR_0002s03570 (11)	scaffold_2:2218115-2218445(+) (11)	NA	NA	NA	AT5G42785.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201649.1.S1_at	A	A1TS	POPTR_0002s03610	POPTR_0002s03610 (11)	scaffold_2:2242050-2242599(-) (11)	NA	NA	NA	AT1G75260.1	"oxidoreductases, acting on NADH or NADPH "	NA	NA	Medtr1g028060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201650.1.S1_at	A	A1TS	POPTR_0002s03620	POPTR_0002s03620 (11)	scaffold_2:2244713-2246175(+) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT1G47271.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.5	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.3	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201651.1.S1_at	A	A1TS	POPTR_0002s03630	POPTR_0002s03630 (10)	scaffold_2:2247339-2247834(-) (11)	NA	Q940Z1	Pentatricopeptide repeat-containing protein At1g19525	AT1G19520.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os02g39820.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g092860.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201652.1.S1_at	A	A1TS	POPTR_0002s03650	POPTR_0002s03650 (11)	scaffold_2:2256545-2257037(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201654.1.S1_x_at	A	A1TS	POPTR_0002s03680	POPTR_0002s03680 (9)	scaffold_2:2286637-2286899(-) (11)	NA	NA	NA	AT4G28556.1	PAK-box/P21-Rho-binding family protein 	LOC_Os02g56580.1	"P21-Rho-binding domain containing protein, putative"	Medtr2g093180.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201655.1.S1_at	A	A1TS	POPTR_0002s03740	POPTR_0002s03740 (10)	scaffold_2:2325460-2326008(-) (10)	NA	Q9M384	Protein SCARECROW	AT3G54220.1	GRAS family transcription factor 	LOC_Os11g03110.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g081070.1	Flagellar basal body rod protein; GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201655.1.S1_s_at	A	A2TS	POPTR_0002s03740	POPTR_0005s24850 (11)//POPTR_0002s03740 (11)	scaffold_2:2325414-2325982(-) (11)//scaffold_5:23275380-23275948(+) (11)	NA	Q9M384	Protein SCARECROW	AT3G54220.1	GRAS family transcription factor 	LOC_Os11g03110.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g081070.1	Flagellar basal body rod protein; GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201658.1.S1_s_at	A	A1TS	POPTR_0002s03870	POPTR_0002s03870 (11)	scaffold_2:2432101-2432322(-) (11)	NA	Q8GWV5	U-box domain-containing protein 3	AT3G54790.1	ARM repeat superfamily protein 	LOC_Os08g01900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.201659.1.S1_at	A	A1TS	POPTR_0002s03970	POPTR_0002s03970 (10)	scaffold_2:2492139-2493095(-) (11)	POPTR_0005s24540 (6)	Q499P8	UPF0420 protein C16orf58 homolog	AT2G31190.1	"Protein of unknown function, DUF647 "	LOC_Os04g43690.1	"DUF647 domain containing protein, putative, expressed"	Medtr4g106950.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201660.1.S1_at	A	A1TS	POPTR_0002s04040	POPTR_0002s04040 (11)	scaffold_2:2537906-2538092(-) (11)	NA	Q9LTC5	Ethylene-responsive transcription factor ERF098	AT3G23230.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g05590.1	"AP2 domain containing protein, expressed"	Medtr4g072970.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.201661.1.S1_s_at	A	A1TS	POPTR_0002s04050	POPTR_0002s04050 (11)	scaffold_2:2541152-2541662(-) (11)	NA	Q8S2T1	Dehydrodolichyl diphosphate synthase 6	AT2G17570.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os06g07120.1	"dehydrodolichyl diphosphate synthase, putative, expressed"	Medtr1g121110.1	Di-trans-poly-cis-decaprenylcistransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
PtpAffx.201662.1.S1_at	A	A1TS	POPTR_0002s04060	POPTR_0002s04060 (11)	scaffold_2:2542952-2543065(-) (11)	NA	P24397	Hyoscyamine 6-dioxygenase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os07g07410.2	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201662.1.S1_s_at	A	A2TS	POPTR_0002s04060	POPTR_0002s04070 (11)//POPTR_0002s04060 (11)	scaffold_2:2543013-2543607(-) (11)//scaffold_2:2548903-2549497(-) (11)	NA	P24397	Hyoscyamine 6-dioxygenase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os07g07410.2	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201664.1.S1_at	A	A1TS	POPTR_0002s04080	POPTR_0002s04080 (11)	scaffold_2:2554774-2555298(+) (11)	NA	P93823	RING-H2 finger protein ATL1	AT1G04360.1	RING/U-box superfamily protein 	LOC_Os02g57460.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr1g042550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201665.1.S1_at	A	A1TS	POPTR_0002s04090	POPTR_0002s04090 (11)	scaffold_2:2557698-2559082(-) (11)	NA	NA	NA	AT2G31240.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g57470.1	"tetratricopeptide repeat containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201666.1.S1_at	A	A1TS	POPTR_0002s04120	POPTR_0002s04120 (11)	scaffold_2:2572601-2574116(+) (11)	NA	NA	NA	AT2G31270.1	homolog of yeast CDT1 A 	LOC_Os04g10650.1	"CDT1A - Putative DNA replication initiation protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201667.1.S1_at	A	A1TS	POPTR_0002s04130	POPTR_0002s04130 (11)	scaffold_2:2574812-2575717(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT4G08300.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os03g05530.1	"nodulin, putative, expressed"	Medtr1g068120.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.201668.1.S1_at	A	A1TS	POPTR_0002s04140	POPTR_0002s04140 (11)	scaffold_2:2578147-2578940(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201669.1.S1_at	A	A1MS	POPTR_0002s04150	POPTR_0002s04150 (11)	scaffold_2:2580850-2581617(+) (11)	NA	P24397	Hyoscyamine 6-dioxygenase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os10g39140.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201670.1.S1_at	A	A1TS	POPTR_0002s04190	POPTR_0002s04190 (10)	scaffold_2:2608227-2610282(+) (10)	NA	NA	NA	AT2G42450.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g39790.1	"lipase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201671.1.S1_at	A	A1TS	POPTR_0002s04200	POPTR_0002s04200 (11)	scaffold_2:2623556-2624010(+) (11)	NA	Q9M2J7	LOB domain-containing protein 29	AT3G58190.1	lateral organ boundaries-domain 29 	LOC_Os08g44940.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201672.1.S1_s_at	A	A1TS	POPTR_0002s04210	POPTR_0002s04210 (11)	scaffold_2:2632951-2633731(-) (11)	NA	Q9SLB7	LOB domain-containing protein 16	AT2G42430.1	lateral organ boundaries-domain 16 	LOC_Os08g44940.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201673.1.S1_at	A	A1TS	POPTR_0002s04220	POPTR_0002s04220 (11)	scaffold_2:2637557-2638982(-) (11)	NA	Q9ZP54	Poly [ADP-ribose] polymerase 1	AT2G31320.1	poly(ADP-ribose) polymerase 2 	LOC_Os07g23110.1	"poly synthetase 1, putative, expressed"	Medtr4g069780.1	BRCT 	GO:0006471|protein amino acid ADP-ribosylation||GO:0044260|cellular macromolecule metabolic process	GO:0003677|DNA binding||GO:0003950|NAD+ ADP-ribosyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.201674.1.S1_at	A	A1TS	POPTR_0002s04260	POPTR_0002s04260 (11)	scaffold_2:2672479-2672995(-) (11)	NA	Q38895	Transcriptional regulator SUPERMAN	AT2G42410.1	zinc finger protein 11 	LOC_Os07g01180.1	"ZOS7-01 - C2H2 zinc finger protein, expressed"	Medtr5g014570.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.201675.1.S1_at	A	A1TS	POPTR_0002s04270	POPTR_0002s04270 (11)	scaffold_2:2675223-2676872(-) (11)	NA	P54697	Myosin-J heavy chain	AT1G54560.1	Myosin family protein with Dil domain 	LOC_Os06g29350.1	"myosin, putative, expressed"	Medtr7g117740.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.201676.1.S1_at	A	A1TS	POPTR_0002s04270	POPTR_0002s04270 (11)	scaffold_2:2681463-2682967(-) (11)	NA	P54697	Myosin-J heavy chain	AT1G54560.1	Myosin family protein with Dil domain 	LOC_Os06g29350.1	"myosin, putative, expressed"	Medtr7g117740.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.201677.1.S1_at	A	A1TS	POPTR_0002s04270	POPTR_0002s04270 (11)	scaffold_2:2684998-2685720(-) (11)	NA	P54697	Myosin-J heavy chain	AT1G54560.1	Myosin family protein with Dil domain 	LOC_Os06g29350.1	"myosin, putative, expressed"	Medtr7g117740.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.201678.1.S1_at	A	A1TS	POPTR_0002s04360	POPTR_0002s04360 (11)	scaffold_2:2720951-2721510(-) (11)	NA	NA	NA	AT2G30690.1	"Protein of unknown function, DUF593 "	LOC_Os01g56790.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201679.1.S1_at	A	A1TS	POPTR_0002s04380	POPTR_0002s04380 (11)	scaffold_2:2732649-2734669(+) (11)	NA	Q63B75	5-dehydro-2-deoxygluconokinase 1	AT1G06730.1	pfkB-like carbohydrate kinase family protein 	LOC_Os03g06880.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201681.1.S1_at	A	A1TS	POPTR_0002s04400	POPTR_0002s04400 (10)	scaffold_2:2755839-2756805(+) (10)	NA	NA	NA	AT2G30630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g43300.1	expressed protein	Medtr1g089770.1	"H1flk, putative "	GO:0001906|cell killing	GO:0005524|ATP binding	NA
PtpAffx.201682.1.S1_at	A	A1TS	POPTR_0002s04470	POPTR_0002s04470 (11)	scaffold_2:2797666-2798156(+) (11)	NA	Q9C889	PRA1 family protein F2	AT1G55190.1	PRA1 (Prenylated rab acceptor) family protein 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201683.1.S1_s_at	A	A2TS	POPTR_0002s04480	POPTR_0002s04480 (11)//POPTR_0004s05600 (11)	scaffold_2:2801301-2801379(+) (11)//scaffold_4:4332830-4332908(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g134650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201683.1.S1_x_at	A	A1TS	POPTR_0002s04480	POPTR_0002s04480 (11)	scaffold_2:2801304-2802411(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g134650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201684.1.S1_at	A	A1MS	POPTR_0002s04510	POPTR_0002s04510 (10)	scaffold_2:2827251-2828007(+) (11)	NA	Q8RXE1	Probable galacturonosyltransferase 5	AT2G30575.1	los glycosyltransferase 5 	LOC_Os11g37980.1	"GAUT2/LGT2, putative, expressed"	Medtr4g141010.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.201685.1.S1_at	A	A1TS	POPTR_0002s04550	POPTR_0002s04550 (9)	scaffold_2:2838182-2838760(-) (11)	NA	Q9FMU5	U3 small nucleolar RNA-associated protein 18 homolog	AT5G14050.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g41190.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g009910.1	Inorganic pyrophosphatase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201686.1.S1_at	A	A1TS	POPTR_0002s04560	POPTR_0002s04560 (10)	scaffold_2:2840266-2842259(-) (11)	NA	Q941F1	"Phospholipase A1-Igamma1, chloroplastic"	AT1G06800.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g32380.1	"phospholipase, putative, expressed"	Medtr4g104700.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.201687.1.S1_at	A	A1TS	POPTR_0002s04570	POPTR_0002s04570 (11)	scaffold_2:2853159-2855054(+) (11)	NA	Q8W104	F-box/LRR-repeat protein 17	AT3G54650.1	RNI-like superfamily protein 	LOC_Os03g43390.1	"F-box/LRR domain containing protein, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.201688.1.S1_at	A	A1TS	POPTR_0002s04580	POPTR_0002s04580 (9)	scaffold_2:2857112-2857791(-) (9)	NA	P13089	Auxin-induced protein AUX28	AT4G14550.1	indole-3-acetic acid inducible 14 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.201689.1.S1_at	A	A1MS	POPTR_0002s04660	POPTR_0002s04660 (11)	scaffold_2:2904687-2905089(+) (11)	NA	Q99090	Light-inducible protein CPRF2	AT4G02640.1	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.20169.1.S1_at	A	A1TS	POPTR_0004s11490	POPTR_0004s11490 (9)	scaffold_4:10240282-10241524(+) (9)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT3G01100.1	hypothetical protein 1 	LOC_Os12g39320.1	"DUF221 domain containing protein, expressed"	Medtr6g013380.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.201690.1.S1_s_at	A	A1TS	POPTR_0002s04670	POPTR_0002s04670 (11)	scaffold_2:2908726-2910990(-) (11)	NA	Q9AR19	Histone acetyltransferase GCN5	AT3G54610.1	histone acetyltransferase of the GNAT family 1 	LOC_Os10g28040.1	"histone acetyltransferase GCN5, putative, expressed"	Medtr8g074500.1	GCN5-related N-acetyltransferase; Bromodomain 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.201691.1.S1_at	A	A1TS	POPTR_0002s04680	POPTR_0002s04680 (11)	scaffold_2:2921568-2922342(-) (11)	NA	Q96PP9	Guanylate-binding protein 4	AT2G38840.1	Guanylate-binding family protein 	LOC_Os03g58240.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.201692.1.S1_at	A	A1TS	POPTR_0002s04700	POPTR_0002s04700 (9)	scaffold_2:2938486-2939140(-) (10)	NA	Q9LHG8	Protein ELC	AT2G38830.1	Ubiquitin-conjugating enzyme/RWD-like protein 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
PtpAffx.201693.1.S1_s_at	A	A1TS	POPTR_0002s04710	POPTR_0002s04710 (11)	scaffold_2:2950373-2950950(-) (11)	NA	NA	NA	AT3G22970.1	Protein of unknown function (DUF506)  	LOC_Os03g58230.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr1g083310.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201695.1.S1_at	A	A1TS	POPTR_0002s04750	POPTR_0002s04750 (11)	scaffold_2:2989647-2990194(-) (11)	NA	NA	NA	AT3G63430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 135 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os11g37670.1	expressed protein	Medtr1g083510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201696.1.S1_at	A	A1MS	POPTR_0002s04770	POPTR_0002s04770 (11)	scaffold_2:3009692-3010128(-) (11)	NA	NA	NA	AT3G63420.2	Ggamma-subunit 1 	LOC_Os02g04520.1	"AGG2, putative, expressed"	Medtr1g083530.1	"AGG2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201697.1.S1_at	A	A1TS	POPTR_0002s04810	POPTR_0002s04810 (11)	scaffold_2:3035872-3036699(+) (11)	NA	O82018	Calmodulin	AT3G22930.1	calmodulin-like 11 	LOC_Os05g41210.1	"OsCam2 - Calmodulin, expressed"	Medtr7g034910.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201698.1.S1_s_at	A	A1TS	POPTR_0002s04820	POPTR_0002s04820 (11)	scaffold_2:3038043-3038499(+) (11)	NA	NA	NA	AT3G63390.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g40200.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201699.1.S1_at	A	A1TS	POPTR_0002s04840	POPTR_0002s04840 (11)	scaffold_2:3053401-3053538(+) (11)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.201699.1.S1_x_at	A	A1TS	POPTR_0002s04840	POPTR_0002s04840 (11)	scaffold_2:3053031-3053538(+) (11)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.2017.1.A1_x_at	A	A1TS	POPTR_0001s32780	POPTR_0001s32780 (11)	scaffold_1:31089588-31090028(+) (11)	NA	P35007	Adenosylhomocysteinase	AT4G13940.1	S-adenosyl-L-homocysteine hydrolase 	LOC_Os11g26850.2	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr3g104810.1	S-adenosyl-L-homocysteine hydrolase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004013|adenosylhomocysteinase activity	NA
PtpAffx.2017.2.A1_x_at	A	A1TS	POPTR_0001s32780	POPTR_0001s32780 (9)	scaffold_1:31089468-31090035(+) (9)	NA	P35007	Adenosylhomocysteinase	AT4G13940.1	S-adenosyl-L-homocysteine hydrolase 	LOC_Os11g26850.2	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr3g104810.1	S-adenosyl-L-homocysteine hydrolase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004013|adenosylhomocysteinase activity	NA
PtpAffx.2017.3.S1_a_at	A	A1TS	POPTR_0016s10200	POPTR_0016s10200 (11)	scaffold_16:8342479-8342735(-) (11)	NA	Q9M330	Probable proteasome inhibitor	AT3G53970.1	proteasome inhibitor-related 	LOC_Os07g36420.1	"proteasome inhibitor-related, putative, expressed"	Medtr7g070890.1	PI31 proteasome regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2017.6.A1_s_at	A	A1TS	POPTR_0017s08610	POPTR_0017s08610 (11)	scaffold_17:7232801-7233522(+) (11)	NA	Q01781	Adenosylhomocysteinase	AT4G13940.1	S-adenosyl-L-homocysteine hydrolase 	LOC_Os11g26850.2	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr3g104810.1	S-adenosyl-L-homocysteine hydrolase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004013|adenosylhomocysteinase activity	NA
PtpAffx.2017.7.S1_a_at	A	A1TS	POPTR_0016s10200	POPTR_0016s10200 (11)	scaffold_16:8344053-8344319(-) (11)	NA	Q9M330	Probable proteasome inhibitor	AT3G53970.1	proteasome inhibitor-related 	LOC_Os07g36420.1	"proteasome inhibitor-related, putative, expressed"	Medtr7g070890.1	PI31 proteasome regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2017.7.S1_at	A	A1MS	POPTR_0016s10200	POPTR_0016s10200 (11)	scaffold_16:8343518-8343838(-) (11)	NA	Q9M330	Probable proteasome inhibitor	AT3G53970.1	proteasome inhibitor-related 	LOC_Os07g36420.1	"proteasome inhibitor-related, putative, expressed"	Medtr7g070890.1	PI31 proteasome regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2017.8.A1_a_at	A	A1TS	POPTR_0016s10200	POPTR_0016s10200 (11)	scaffold_16:8342468-8342735(-) (11)	NA	Q9M330	Probable proteasome inhibitor	AT3G53970.1	proteasome inhibitor-related 	LOC_Os07g36420.1	"proteasome inhibitor-related, putative, expressed"	Medtr7g070890.1	PI31 proteasome regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201701.1.S1_at	A	A1TS	POPTR_0002s04860	POPTR_0002s04860 (11)	scaffold_2:3087725-3088953(-) (11)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201702.1.S1_at	A	A1TS	POPTR_0002s04860	POPTR_0002s04860 (10)	scaffold_2:3091352-3091812(-) (11)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201703.1.S1_s_at	A	A1TS	POPTR_0002s04860	POPTR_0002s04860 (9)	scaffold_2:3093256-3094979(-) (11)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201704.1.S1_at	A	A1TS	POPTR_0002s04870	POPTR_0002s04870 (11)	scaffold_2:3107842-3109171(+) (11)	NA	NA	NA	AT5G19840.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g56640.3	"transcription factor jumonji, putative, expressed"	Medtr1g083710.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201705.1.S1_at	A	A1TS	POPTR_0002s04870	POPTR_0002s04870 (9)	scaffold_2:3110784-3111722(+) (10)	NA	NA	NA	AT5G19840.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g56640.3	"transcription factor jumonji, putative, expressed"	Medtr1g083710.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201706.1.S1_at	A	A1TS	POPTR_0002s04900	POPTR_0002s04900 (11)	scaffold_2:3141155-3141626(-) (11)	NA	Q9LUH8	Heat stress transcription factor A-6b	AT3G22830.1	heat shock transcription factor  A6B 	LOC_Os03g58160.1	"heat stress transcription factor, putative, expressed"	Medtr1g083770.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.201707.1.S1_at	A	A1TS	POPTR_0002s04910	POPTR_0002s04910 (11)	scaffold_2:3156492-3157002(-) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.201708.1.S1_at	A	A1TS	POPTR_0002s04920	POPTR_0002s04920 (10)	scaffold_2:3165192-3166980(-) (10)	NA	Q8GY55	Protein TIFY 4B	AT4G14720.1	TIFY domain/Divergent CCT motif family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201709.1.S1_at	A	A1MS	POPTR_0002s04930	POPTR_0002s04930 (11)	scaffold_2:3171619-3172199(-) (11)	NA	NA	NA	AT5G04700.1	Ankyrin repeat family protein 	NA	NA	Medtr2g025590.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201710.1.S1_at	A	A1TS	POPTR_0002s04940	POPTR_0002s04940 (10)	scaffold_2:3181087-3181511(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025590.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201711.1.S1_a_at	A	A1TS	POPTR_0002s04950	POPTR_0002s04950 (11)	scaffold_2:3185837-3185877(-) (11)//scaffold_2:3185930-3185970(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201711.1.S1_at	A	A1TS	POPTR_0002s04950	POPTR_0002s04950 (11)	scaffold_2:3185056-3185932(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201712.1.S1_at	A	A1TS	POPTR_0002s04960	POPTR_0002s04960 (11)	scaffold_2:3187544-3188085(-) (11)	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os11g14544.6	expressed protein	Medtr2g025590.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201713.1.S1_at	A	A1TS	POPTR_0002s04990	POPTR_0002s04990 (11)	scaffold_2:3202095-3202546(+) (11)	NA	Q94A20	BI1-like protein	AT1G03070.2	Bax inhibitor-1 family protein 	LOC_Os07g08070.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr1g083870.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201714.1.S1_at	A	A1TS	POPTR_0002s05000	POPTR_0002s05000 (11)	scaffold_2:3203494-3204250(-) (11)	NA	NA	NA	AT3G22810.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os03g43510.1	expressed protein	Medtr1g083880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201715.1.S1_at	A	A1TS	POPTR_0002s05010	POPTR_0002s05010 (11)	scaffold_2:3209824-3210406(-) (11)	NA	NA	NA	AT3G63290.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os10g14180.9	expressed protein	Medtr1g083900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201716.1.S1_at	A	A1TS	POPTR_0002s05030	POPTR_0002s05030 (11)	scaffold_2:3242983-3243960(+) (11)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.1	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.201717.1.S1_at	A	A1TS	POPTR_0002s05040	POPTR_0002s05040 (11)	scaffold_2:3248489-3249044(+) (11)	NA	Q6AZB8	Putative nuclease HARBI1	AT3G63270.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g07880.1	"trp repressor/replication initiator, putative, expressed"	Medtr2g114460.1	"Trp repressor/replication initiator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201720.1.S1_at	A	A1TS	POPTR_0002s05090	POPTR_0002s05090 (11)	scaffold_2:3298976-3299764(+) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT3G63240.1	DNAse I-like superfamily protein 	LOC_Os03g57950.1	"type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed"	Medtr1g084030.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201721.1.S1_at	A	A1TS	POPTR_0002s05100	POPTR_0002s05100 (11)	scaffold_2:3316390-3317549(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.201722.1.S1_at	A	A1TS	POPTR_0002s05120	POPTR_0002s05120 (11)	scaffold_2:3324955-3325772(+) (11)	NA	Q9ZQI8	Non-specific lipid-transfer protein-like protein At2g13820	AT2G48130.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g07930.1	"LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g007090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201723.1.S1_at	A	A1TS	POPTR_0002s05160	POPTR_0002s05160 (11)	scaffold_2:3338379-3339125(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201725.1.S1_at	A	A1TS	POPTR_0002s05180	POPTR_0002s05180 (11)	scaffold_2:3356210-3356662(-) (11)	NA	NA	NA	AT4G02715.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g084110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201725.1.S1_s_at	A	A1TS	POPTR_0002s05180	POPTR_0002s05180 (11)	scaffold_2:3356113-3356616(-) (11)	NA	NA	NA	AT4G02715.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g084110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201726.1.S1_at	A	A1TS	POPTR_0002s05200	POPTR_0002s05200 (11)	scaffold_2:3362720-3363109(+) (11)	NA	NA	NA	AT3G22530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g07670.1	expressed protein	Medtr5g006510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201726.1.S1_s_at	A	A1TS	POPTR_0002s05200	POPTR_0002s05200 (11)	scaffold_2:3362688-3363006(+) (11)	NA	NA	NA	AT3G22530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g07670.1	expressed protein	Medtr5g006510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201727.1.S1_at	A	A1TS	POPTR_0002s05210	POPTR_0002s05210 (11)	scaffold_2:3375111-3375561(+) (11)	NA	NA	NA	AT1G05420.1	ovate family protein 12 	LOC_Os11g05770.1	"DUF623 domain containing protein, expressed"	Medtr1g086250.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201728.1.S1_at	A	A1TS	POPTR_0002s05230	POPTR_0002s05230 (11)	scaffold_2:3384766-3387757(-) (11)	NA	Q99PP7	E3 ubiquitin-protein ligase TRIM33	AT5G36740.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os07g07690.2	"PHD-finger domain containing protein, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	NA
PtpAffx.201728.1.S1_s_at	A	A2TS	POPTR_0002s05230	POPTR_0005s23270 (11)//POPTR_0002s05230 (11)	scaffold_2:3384730-3387699(-) (11)//scaffold_5:22098355-22100565(+) (11)	NA	Q99PP7	E3 ubiquitin-protein ligase TRIM33	AT5G36740.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os07g07690.2	"PHD-finger domain containing protein, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	NA
PtpAffx.201729.1.S1_at	A	A1TS	POPTR_0002s05250	POPTR_0002s05250 (11)	scaffold_2:3408240-3408728(+) (11)	NA	NA	NA	AT5G28150.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr7g140620.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20173.1.S1_at	A	A1TS	POPTR_0001s14750	POPTR_0001s14750 (11)	scaffold_1:11617035-11617568(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT1G80690.1	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201730.1.S1_at	A	A1TS	POPTR_0002s05290	POPTR_0002s05290 (9)	scaffold_2:3426140-3428936(+) (11)	NA	Q8SSN5	"N-alpha-acetyltransferase 20, NatB catalytic subunit"	AT1G03150.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g49230.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g143670.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.201731.1.S1_at	A	A1TS	POPTR_0002s05300	POPTR_0002s05300 (11)	scaffold_2:3432303-3434399(-) (11)	NA	O04408	"Ent-copalyl diphosphate synthase, chloroplastic"	AT4G02780.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os02g17780.1	"ent-kaurene synthase, chloroplast precursor, putative, expressed"	Medtr7g010960.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.201732.1.S1_at	A	A1TS	POPTR_0002s05350	POPTR_0002s05350 (11)	scaffold_2:3481720-3482397(+) (11)	NA	Q2MY58	Patatin group A-3	AT3G63200.1	PATATIN-like protein 9 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g086350.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.201733.1.S1_at	A	A1TS	POPTR_0002s05410	POPTR_0002s05410 (11)	scaffold_2:3522346-3523431(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201734.1.S1_at	A	A1TS	POPTR_0002s05420	POPTR_0002s05420 (10)	scaffold_2:3529126-3529564(+) (10)	NA	P40983	Uncharacterized protein in xynA 3'region (Fragment)	AT1G03160.1	FZO-like 	LOC_Os05g32390.1	"FZL, putative, expressed"	Medtr1g086430.1	Dynamin; Thiamine monophosphate synthase 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.201734.1.S1_s_at	A	A1TS	POPTR_0002s05420	POPTR_0002s05420 (11)	scaffold_2:3529239-3529546(+) (11)	NA	P40983	Uncharacterized protein in xynA 3'region (Fragment)	AT1G03160.1	FZO-like 	LOC_Os05g32390.1	"FZL, putative, expressed"	Medtr1g086430.1	Dynamin; Thiamine monophosphate synthase 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.201735.1.S1_at	A	A1MS	POPTR_0002s05420	POPTR_0002s05420 (10)	scaffold_2:3530331-3531727(+) (10)	NA	P40983	Uncharacterized protein in xynA 3'region (Fragment)	AT1G03160.1	FZO-like 	LOC_Os05g32390.1	"FZL, putative, expressed"	Medtr1g086430.1	Dynamin; Thiamine monophosphate synthase 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.201736.1.S1_at	A	A1TS	POPTR_0002s05430	POPTR_0002s05430 (11)	scaffold_2:3542050-3542614(+) (11)	NA	NA	NA	AT1G03170.1	Protein of unknown function (DUF3049) 	NA	NA	Medtr5g005940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201737.1.S1_at	A	A1TA	POPTR_0002s05450	POPTR_0002s05450 (11)	scaffold_2:3561682-3561868(+) (11)	NA	NA	NA	AT3G63150.1	MIRO-related GTP-ase 2 	LOC_Os03g59590.1	"ATP/GTP/Ca++ binding protein, putative, expressed"	Medtr1g086440.1	"Calcium-binding EF-hand; Ras small GTPase, Rab type; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201738.1.S1_at	A	A1TS	POPTR_0002s05480	POPTR_0002s05480 (11)	scaffold_2:3573978-3574978(-) (11)	NA	NA	NA	AT1G03180.1	unknown protein; Has 36 Blast hits to 36 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g16250.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201739.1.S1_at	A	A1TS	POPTR_0002s05500	POPTR_0002s05500 (11)	scaffold_2:3585605-3587426(+) (11)	NA	Q8W4M7	DNA repair helicase UVH6	AT1G03190.2	RAD3-like DNA-binding helicase protein 	LOC_Os05g05260.1	"helicase, putative, expressed"	AC234703_2.1	"Xeroderma pigmentosum group D protein; ATP-dependent helicase, DEAH-box; ; AC234703.1 26378-15197 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004003|ATP-dependent DNA helicase activity	GO:0005634|nucleus
PtpAffx.201741.1.S1_at	A	A1TS	POPTR_0002s05530	POPTR_0002s05530 (11)	scaffold_2:3611767-3612869(+) (11)	NA	Q9LS23	Aluminum-activated malate transporter 13	AT5G46600.1	Aluminium activated malate transporter family protein 	LOC_Os10g42180.1	"aluminum-activated malate transporter, putative, expressed"	Medtr8g102840.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201743.1.S1_at	A	A1TS	POPTR_0002s05550	POPTR_0002s05550 (11)	scaffold_2:3635046-3635402(-) (11)	NA	Q9XIN8	F-box protein At2g27310	AT2G27310.1	F-box family protein 	LOC_Os04g33820.1	"OsFBX132 - F-box domain containing protein, expressed"	Medtr1g086490.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201744.1.S1_at	A	A1TS	POPTR_0002s05580	POPTR_0002s05580 (11)	scaffold_2:3651536-3652038(-) (11)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201745.1.S1_at	A	A1TS	POPTR_0002s05590	POPTR_0002s05590 (11)	scaffold_2:3664178-3664418(+) (11)	NA	Q6H6V4	Auxin response factor 6	AT1G30330.1	auxin response factor 6 	LOC_Os02g06910.1	"auxin response factor 6, putative, expressed"	Medtr2g022250.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.201745.1.S1_s_at	A	A2TS	POPTR_0002s05590	POPTR_0005s22930 (11)//POPTR_0002s05590 (11)	scaffold_2:3663678-3666558(+) (11)//scaffold_5:21792171-21796313(-) (11)	NA	Q6H6V4	Auxin response factor 6	AT1G30330.1	auxin response factor 6 	LOC_Os02g06910.1	"auxin response factor 6, putative, expressed"	Medtr2g022250.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.201746.1.S1_at	A	A1TS	POPTR_0002s05680	POPTR_0002s05680 (10)	scaffold_2:3738433-3739028(+) (11)	NA	NA	NA	AT2G30800.1	helicase in vascular tissue and tapetum 	LOC_Os01g56190.1	"HVT1, putative, expressed"	Medtr5g097550.1	"Single-stranded nucleic acid binding R3H; Helicase, C-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201748.1.S1_at	A	A1TS	POPTR_0002s05700	POPTR_0002s05700 (11)	scaffold_2:3750795-3751590(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201749.1.S1_s_at	A	A1TS	POPTR_0002s05750	POPTR_0002s05750 (11)	scaffold_2:3772907-3774021(+) (11)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201750.1.S1_at	A	A1TS	POPTR_0002s05770	POPTR_0002s05770 (11)	scaffold_2:3782115-3785107(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G14600.1	Homeodomain-like superfamily protein 	LOC_Os06g45890.1	"MYB family transcription factor, putative, expressed"	Medtr1g039660.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201751.1.S1_at	A	A1TS	POPTR_0002s05820	POPTR_0002s05820 (10)	scaffold_2:3827530-3827913(+) (10)	NA	Q9SK55	NAC domain-containing protein 42	AT2G43000.1	NAC domain containing protein 42 	LOC_Os03g56580.1	"no apical meristem protein, putative, expressed"	Medtr5g098180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.201752.1.S1_s_at	A	A1TS	POPTR_0002s05860	POPTR_0002s05860 (11)	scaffold_2:3846899-3847182(+) (11)	NA	NA	NA	AT3G12830.1	SAUR-like auxin-responsive protein family  	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201753.1.S1_at	A	A1TS	POPTR_0002s05900	POPTR_0002s05900 (11)	scaffold_2:3899454-3899751(+) (11)	NA	NA	NA	AT4G18260.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os05g49040.1	expressed protein	Medtr3g061440.1	Cytochrome b561 / ferric reductase transmembrane 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201753.1.S1_s_at	A	A1TS	POPTR_0002s05900	POPTR_0002s05900 (11)	scaffold_2:3899178-3899716(+) (11)	NA	NA	NA	AT4G18260.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os05g49040.1	expressed protein	Medtr3g061440.1	Cytochrome b561 / ferric reductase transmembrane 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201754.1.S1_at	A	A1TS	POPTR_0002s05930	POPTR_0002s05930 (11)	scaffold_2:3909730-3910193(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g061560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201755.1.S1_at	A	A1TS	POPTR_0002s05970	POPTR_0002s05970 (11)	scaffold_2:3955034-3956059(+) (11)	NA	Q9SHJ3	Callose synthase 7	AT1G06490.1	glucan synthase-like 7 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.201756.1.S1_at	A	A1TS	POPTR_0002s05990	POPTR_0002s05990 (11)	scaffold_2:3975837-3976208(+) (11)	NA	Q9SJG2	Probable receptor-like protein kinase At2g42960	AT3G59110.1	Protein kinase superfamily protein 	LOC_Os10g35450.1	"serine/threonine-protein kinase, putative, expressed"	Medtr3g061780.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201757.1.S1_at	A	A1TS	POPTR_0002s06020	POPTR_0002s06020 (11)	scaffold_2:4020898-4021486(+) (11)	NA	NA	NA	AT1G29350.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os01g47430.2	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr4g136700.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201758.1.S1_at	A	A1TS	POPTR_0002s06030	POPTR_0002s06030 (11)	scaffold_2:4022669-4023122(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT2G42940.1	Predicted AT-hook DNA-binding family protein 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	Medtr5g098890.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201759.1.S1_at	A	A1MS	POPTR_0002s06040	POPTR_0002s06040 (11)	scaffold_2:4024011-4025342(-) (11)	NA	Q9SJG6	"Pentatricopeptide repeat-containing protein At2g42920, chloroplastic"	AT2G42920.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os04g01990.1	"pentatricopeptide domain containing protein, putative, expressed"	Medtr5g098900.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201760.1.S1_at	A	A1TS	POPTR_0002s06070	POPTR_0002s06070 (11)	scaffold_2:4043592-4044540(-) (11)	NA	P08965	Meiosis protein mei2	AT1G29400.2	MEI2-like protein 5 	LOC_Os02g48790.2	"AML1, putative, expressed"	Medtr2g056620.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201762.1.S1_at	A	A1TS	POPTR_0002s06150	POPTR_0002s06150 (11)	scaffold_2:4108705-4109634(-) (11)	NA	Q6WG30	Taxadiene 5-alpha hydroxylase	AT2G42850.1	"cytochrome P450, family 718 "	LOC_Os07g33440.1	"cytochrome P450, putative, expressed"	Medtr5g099060.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.201763.1.S1_at	A	A1TS	POPTR_0002s06180	POPTR_0002s06180 (11)	scaffold_2:4142164-4144743(+) (11)	NA	Q94BU1	"Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic"	AT1G71810.1	Protein kinase superfamily protein 	LOC_Os04g54790.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201764.1.S1_at	A	A1TS	POPTR_0002s06190	POPTR_0002s06190 (11)	scaffold_2:4149161-4151374(-) (11)	NA	Q00497	"Shikimate kinase, chloroplastic"	AT2G21940.5	shikimate kinase 1 	LOC_Os02g51410.1	"shikimate kinase, putative, expressed"	NA	NA	NA	GO:0004765|shikimate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201765.1.S1_at	A	A1TS	POPTR_0002s06210	POPTR_0002s06210 (11)	scaffold_2:4159668-4160270(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT1G34190.1	NAC domain containing protein 17 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr3g086750.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.201766.1.S1_at	A	A1TS	POPTR_0002s06250	POPTR_0002s06250 (11)	scaffold_2:4182101-4184755(-) (11)	NA	Q9JI38	tRNA pseudouridine synthase 3	AT1G34150.1	Pseudouridine synthase family protein 	LOC_Os03g26440.1	"tRNA pseudouridine synthase family protein, putative"	Medtr8g133980.2	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.201767.1.S1_at	A	A1MS	POPTR_0002s06260	POPTR_0002s06260 (11)	scaffold_2:4187406-4187645(+) (11)	NA	NA	NA	AT1G22730.1	MA3 domain-containing protein 	LOC_Os03g12180.1	"MA3 domain containing protein, expressed"	Medtr6g033390.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201767.1.S1_x_at	A	A1MS	POPTR_0002s06260	POPTR_0002s06260 (11)	scaffold_2:4187406-4187645(+) (11)	NA	NA	NA	AT1G22730.1	MA3 domain-containing protein 	LOC_Os03g12180.1	"MA3 domain containing protein, expressed"	Medtr6g033390.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201770.1.S1_at	A	A1TS	POPTR_0002s06380	POPTR_0002s06380 (10)	scaffold_2:4241184-4241637(-) (11)	NA	C0LGF5	Probable LRR receptor-like serine/threonine-protein kinase At1g34110	AT1G34110.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os06g38990.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr5g048490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.201771.1.S1_at	A	A1TS	POPTR_0002s06390	POPTR_0002s06390 (11)	scaffold_2:4249866-4252121(-) (11)	POPTR_0005s21980 (7)	P29344	"30S ribosomal protein S1, chloroplastic"	AT1G71720.1	Nucleic acid-binding proteins superfamily 	LOC_Os01g40640.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.201772.1.S1_at	A	A1TS	POPTR_0002s06400	POPTR_0002s06400 (11)	scaffold_2:4274355-4276211(+) (11)	NA	Q84MA2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 1"	AT1G71710.1	DNAse I-like superfamily protein 	LOC_Os01g51890.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g035970.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201773.1.S1_at	A	A1TS	POPTR_0002s06420	POPTR_0002s06420 (10)	scaffold_2:4280212-4282251(-) (11)	NA	O55229	Choline/ethanolamine kinase	AT1G71697.1	choline kinase 1 	LOC_Os05g45880.1	"phosphotransferase, putative, expressed"	Medtr3g005000.1	"Choline kinase, N-terminal; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201774.1.S1_at	A	A1TS	POPTR_0002s06430	POPTR_0002s06430 (11)	scaffold_2:4288676-4289427(-) (11)	NA	Q01594	Alliin lyase 1	AT1G34060.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g52010.1	"alliin lyase precursor, putative, expressed"	Medtr3g114550.1	"Allinase, C-terminal; ; "	NA	GO:0016846|carbon-sulfur lyase activity	NA
PtpAffx.201776.1.S1_at	A	A1TS	POPTR_0002s06450	POPTR_0002s06450 (11)	scaffold_2:4313154-4313292(+) (11)	NA	P31757	Alliin lyase	AT1G34060.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g51980.1	"alliin lyase precursor, putative, expressed"	Medtr3g114550.1	"Allinase, C-terminal; ; "	NA	GO:0016846|carbon-sulfur lyase activity	NA
PtpAffx.201777.1.S1_at	A	A1MS	POPTR_0002s06460	POPTR_0002s06460 (10)	scaffold_2:4314816-4316991(-) (11)	NA	Q90240	Carboxypeptidase D	AT1G71696.2	"carboxypeptidase D, putative "	LOC_Os06g05240.1	"zinc carboxypeptidase family protein, putative, expressed"	Medtr1g124630.1	"Peptidase M14, carboxypeptidase A; Carboxypeptidase regulatory region "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004181|metallocarboxypeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.201778.1.S1_at	A	A1TS	POPTR_0002s06480	POPTR_0002s06480 (9)	scaffold_2:4320511-4320893(-) (9)	NA	NA	NA	AT1G29510.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37400.1	OsSAUR45 - Auxin-responsive SAUR gene family member	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201780.1.S1_at	A	A1TS	POPTR_0002s06500	POPTR_0002s06500 (11)	scaffold_2:4344340-4345443(+) (11)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.201781.1.S1_at	A	A1TS	POPTR_0002s06510	POPTR_0002s06510 (11)	scaffold_2:4346978-4347632(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201782.1.S1_at	A	A1TS	POPTR_0002s06520	POPTR_0002s06520 (11)	scaffold_2:4351557-4351672(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G09810.1	Nucleotide-sugar transporter family protein 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr1g124720.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201782.1.S1_s_at	A	A1TS	POPTR_0002s06520	POPTR_0002s06520 (11)	scaffold_2:4351104-4351418(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G09810.1	Nucleotide-sugar transporter family protein 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr1g124720.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201783.1.S1_at	A	A1TS	POPTR_0002s06570	POPTR_0002s06570 (11)	scaffold_2:4378009-4378845(+) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr1g124770.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201784.1.S1_at	A	A1TS	POPTR_0002s06600	POPTR_0002s06600 (11)	scaffold_2:4408808-4409337(-) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G42440.1	Protein kinase superfamily protein 	LOC_Os11g06780.1	"serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed"	Medtr1g124830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201785.1.S1_at	A	A1TS	POPTR_0002s06610	POPTR_0002s06610 (11)	scaffold_2:4428771-4429654(+) (11)	POPTR_0005s21710 (6)	Q9SB58	Probable S-acyltransferase At4g24630	AT4G24630.1	DHHC-type zinc finger family protein 	LOC_Os05g36090.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr1g124850.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.201786.1.S1_at	A	A1MS	POPTR_0002s06620	POPTR_0002s06620 (11)	scaffold_2:4438382-4438981(-) (11)	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.201787.1.S1_at	A	A1TS	POPTR_0002s06630	POPTR_0002s06630 (11)	scaffold_2:4459071-4460279(-) (11)	NA	Q9SJ20	Ribonucleoside-diphosphate reductase large subunit	AT2G21790.1	ribonucleotide reductase 1 	LOC_Os02g56100.1	"ribonucleoside-diphosphate reductase large subunit, putative, expressed"	Medtr4g141590.1	"Ribonucleotide reductase R1 subunit, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20179.1.A1_at	A	A1TS	POPTR_0004s09300	POPTR_0004s09300 (11)	scaffold_4:7853518-7853940(+) (11)	NA	P42739	Polyubiquitin (Fragment)	AT4G05320.6	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr4g124610.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20179.3.A1_at	A	A1TA	POPTR_0004s09300	POPTR_0004s09300 (11)	scaffold_4:7853682-7853946(-) (11)	NA	P42739	Polyubiquitin (Fragment)	AT4G05320.6	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr4g124610.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201790.1.S1_at	A	A1TS	POPTR_0002s06670	POPTR_0002s06670 (11)	scaffold_2:4485944-4487355(+) (11)	NA	Q99JH1	Alba-like protein C9orf23 homolog	AT1G76010.1	Alba DNA/RNA-binding protein 	LOC_Os09g37006.2	"protein of unknown function domain containing protein, expressed"	Medtr3g144390.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201791.1.S1_at	A	A1TS	POPTR_0002s06690	POPTR_0002s06690 (11)	scaffold_2:4497421-4498005(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.201792.1.S1_at	A	A1TS	POPTR_0002s06700	POPTR_0002s06700 (11)	scaffold_2:4509097-4509728(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201793.1.S1_at	A	A1TS	POPTR_0002s06760	POPTR_0002s06760 (11)	scaffold_2:4542075-4542590(+) (11)	NA	Q39962	Citrate-binding protein	NA	NA	LOC_Os12g06900.1	"citrate-binding protein precursor, putative"	Medtr6g041160.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201795.1.S1_at	A	A1TS	POPTR_0002s06790	POPTR_0002s06790 (11)	scaffold_2:4563543-4564043(-) (11)	NA	Q6DYE5	UPF0496 protein At1g20180	AT1G20180.1	Protein of unknown function (DUF677) 	LOC_Os04g34590.1	"UPF0496 protein 2, putative"	Medtr1g126660.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201796.1.S1_at	A	A1TS	POPTR_0002s06800	POPTR_0002s06800 (11)	scaffold_2:4571650-4572635(+) (11)	NA	P42777	G-box-binding factor 4	AT5G44080.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g64730.1	"bZIP transcription factor domain containing protein, expressed"	Medtr1g125010.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.201797.1.S1_at	A	A1TS	POPTR_0002s06810	POPTR_0002s06810 (11)	scaffold_2:4576537-4577086(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201798.1.S1_at	A	A1TS	POPTR_0002s06830	POPTR_0002s06830 (10)	scaffold_2:4585031-4585569(+) (10)	NA	NA	NA	AT1G76770.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr1g125090.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201799.1.S1_at	A	A1TS	POPTR_0002s06850	POPTR_0002s06850 (11)	scaffold_2:4603444-4606057(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g64720.1	expressed protein	Medtr6g038720.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2018.1.S1_s_at	A	A1TS	POPTR_0017s03490	POPTR_0017s03490 (11)	scaffold_17:2528924-2529284(-) (11)	NA	NA	NA	AT1G73390.3	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os02g58160.2	expressed protein	Medtr6g088880.1	BRO1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201800.1.S1_at	A	A1TS	POPTR_0002s06890	POPTR_0002s06890 (11)	scaffold_2:4635816-4637709(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G43650.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g01570.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr6g038970.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.201803.1.S1_at	A	A1TS	POPTR_0002s06910	POPTR_0002s06910 (11)	scaffold_2:4668726-4669923(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201804.1.S1_s_at	A	A1TS	POPTR_0002s06920	POPTR_0002s06920 (11)	scaffold_2:4671578-4672145(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76880.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201805.1.S1_at	A	A1TS	POPTR_0002s06990	POPTR_0002s06990 (10)	scaffold_2:4729285-4730357(+) (10)	NA	P48504	Cytochrome b-c1 complex subunit 6	AT1G15120.1	Ubiquinol-cytochrome C reductase hinge protein 	LOC_Os11g06340.2	"ubiquinol-cytochrome C reductase hinge protein, putative, expressed"	Medtr2g008190.1	Ubiquinol-cytochrome C reductase hinge protein 	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
PtpAffx.201806.1.S1_at	A	A1TS	POPTR_0002s07030	POPTR_0002s07030 (11)	scaffold_2:4762940-4764082(+) (11)	NA	Q9FH76	Abscisic acid 8'-hydroxylase 3	AT1G19630.1	"cytochrome P450, family 722, subfamily A, polypeptide 1 "	LOC_Os03g61980.1	"cytochrome P450, putative, expressed"	Medtr8g092860.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.201807.1.S1_at	A	A1TS	POPTR_0002s07070	POPTR_0002s07070 (11)	scaffold_2:4793478-4793704(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os12g06670.1	"protein kinase family protein, putative, expressed"	Medtr1g143280.1	Tyrosine protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201808.1.S1_at	A	A1TS	POPTR_0002s07070	POPTR_0002s07070 (11)	scaffold_2:4800851-4804950(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os12g06670.1	"protein kinase family protein, putative, expressed"	Medtr1g143280.1	Tyrosine protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.20181.1.A1_at	A	A1TS	POPTR_0011s12320	POPTR_0011s12320 (11)	scaffold_11:15044138-15044571(-) (11)	NA	Q9XSC3	WD repeat-containing protein 44	AT3G15470.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58180.1	"WD-40 repeat family protein, putative, expressed"	Medtr7g067570.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201810.1.S1_at	A	A1TS	POPTR_0002s07110	POPTR_0002s07110 (11)	scaffold_2:4851043-4851874(+) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G42140.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os04g58960.1	"regulator of chromosome condensation, putative, expressed"	Medtr1g125660.1	"Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201811.1.S1_at	A	A1TS	POPTR_0002s07130	POPTR_0002s07130 (11)	scaffold_2:4860170-4860458(+) (11)	NA	Q9LSA6	U-box domain-containing protein 29	AT3G18710.1	plant U-box 29 	LOC_Os02g33680.1	"U-box domain containing protein, expressed"	Medtr3g143920.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.201812.1.S1_at	A	A1TS	POPTR_0002s07140	POPTR_0002s07140 (11)	scaffold_2:4876634-4877171(-) (11)	NA	Q8LGD5	Protein MKS1	AT1G21326.1	VQ motif-containing protein 	LOC_Os02g33600.1	"VQ domain containing protein, putative"	Medtr3g125080.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201813.1.S1_s_at	A	A1TS	POPTR_0002s07160	POPTR_0002s07160 (11)	scaffold_2:4889382-4890498(-) (11)	NA	NA	NA	AT5G41470.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os03g64380.1	expressed protein	Medtr3g125010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201814.1.S1_at	A	A1TS	POPTR_0002s07190	POPTR_0002s07190 (11)	scaffold_2:4915337-4917056(+) (11)	NA	Q80W71	Pleckstrin homology domain-containing family A member 8	AT1G21360.1	glycolipid transfer protein 2 	LOC_Os04g35790.3	"GLTP domain containing protein, putative, expressed"	Medtr3g124890.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.201815.1.S1_at	A	A1TS	POPTR_0002s07200	POPTR_0002s07200 (11)	scaffold_2:4917586-4918636(-) (11)	NA	P0C1U4	Endoglucanase 9	AT5G49720.1	glycosyl hydrolase 9A1 	LOC_Os03g21210.1	"endoglucanase, putative, expressed"	Medtr3g124880.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201816.1.S1_s_at	A	A1TS	POPTR_0002s07210	POPTR_0002s07210 (11)	scaffold_2:4920752-4921545(+) (11)	NA	P87055	Uncharacterized protein C57A10.07	AT1G21370.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g35780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201817.1.S1_at	A	A1TS	POPTR_0002s07230	POPTR_0002s07230 (11)	scaffold_2:4937146-4937944(+) (11)	NA	NA	NA	AT1G77160.1	Protein of unknown function (DUF506)  	LOC_Os01g65740.1	plant-specific domain TIGR01615 family protein	Medtr4g142510.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201818.1.S1_at	A	A1TS	POPTR_0002s07260	POPTR_0002s07260 (11)	scaffold_2:4965698-4966163(+) (11)	NA	Q9FH05	Serine carboxypeptidase-like 42	AT5G42240.1	serine carboxypeptidase-like 42 	LOC_Os11g10750.1	"OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr5g080870.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.201819.1.S1_at	A	A1TS	POPTR_0002s07280	POPTR_0002s07280 (11)	scaffold_2:4973130-4973642(+) (11)	NA	NA	NA	AT1G43790.1	tracheary element differentiation-related 6 	NA	NA	Medtr1g009760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20182.1.A1_s_at	A	A1TS	POPTR_0009s12780	POPTR_0009s12780 (11)	scaffold_9:10369803-10370078(-) (11)	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G21270.2	ubiquitin fusion degradation 1 	LOC_Os04g48770.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.20182.2.S1_at	A	A1TS	POPTR_0004s17010	POPTR_0004s17010 (11)	scaffold_4:17360252-17360456(-) (11)	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G21270.2	ubiquitin fusion degradation 1 	LOC_Os02g08480.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.20182.4.A1_at	A	A1MS	POPTR_0005s01700	POPTR_0005s01700 (11)	scaffold_5:1135452-1135978(+) (11)	NA	NA	NA	AT1G56460.1	HIT zinc finger ;PAPA-1-like conserved region 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201820.1.S1_at	A	A1TS	POPTR_0002s07300	POPTR_0002s07300 (11)	scaffold_2:4987050-4989249(-) (11)	NA	Q9SQH6	Probable auxin efflux carrier component 6	AT1G77110.1	Auxin efflux carrier family protein 	LOC_Os06g12610.1	"auxin efflux carrier component, putative, expressed"	Medtr4g154810.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.201821.1.S1_at	A	A1TS	POPTR_0002s07340	POPTR_0002s07340 (11)	scaffold_2:5005454-5005951(-) (11)	NA	Q9LVF9	Pentatricopeptide repeat-containing protein At3g21470	AT3G21470.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os01g65840.1	"pentatricopeptide, putative, expressed"	Medtr3g125360.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201822.1.S1_at	A	A3MS	POPTR_0002s07350	POPTR_0002s07350 (11)//POPTR_0002s07360 (11)//POPTR_0002s07370 (11)	scaffold_2:5020663-5020874(+) (11)//scaffold_2:5026017-5026228(-) (11)//scaffold_2:5041333-5041544(+) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT1G21460.1	Nodulin MtN3 family protein 	LOC_Os01g65880.1	"nodulin MtN3 family protein, putative, expressed"	AC147714_1.1	MtN3 and saliva related transmembrane protein AC147714.8 37997-39514 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201823.1.S1_at	A	A1MS	POPTR_0002s07400	POPTR_0002s07400 (11)	scaffold_2:5066358-5067386(+) (11)	NA	O22042	Mitogen-activated protein kinase kinase kinase 3	AT1G53570.4	mitogen-activated protein kinase kinase kinase 3 	LOC_Os04g35700.1	"STE_MEKK_ste11_MAP3K.16 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g143420.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201824.1.S1_at	A	A1TS	POPTR_0002s07420	POPTR_0002s07420 (11)	scaffold_2:5072686-5074398(+) (11)	NA	Q8L7M4	Small RNA degrading nuclease 5	AT5G25800.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os12g08740.1	"exonuclease, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201826.1.S1_at	A	A1TS	POPTR_0002s07450	POPTR_0002s07450 (11)	scaffold_2:5100095-5101626(+) (11)	NA	O49290	"Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic"	AT1G77060.1	Phosphoenolpyruvate carboxylase family protein 	LOC_Os12g08760.1	"carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed"	Medtr7g005800.1	Isocitrate lyase and phosphorylmutase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201827.1.S1_s_at	A	A1TS	POPTR_0002s07480	POPTR_0002s07480 (9)	scaffold_2:5110124-5110398(+) (9)	POPTR_0487s00210 (6)	NA	NA	AT1G31130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os08g01590.2	expressed protein	Medtr4g165710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201828.1.S1_at	A	A1TS	POPTR_0002s07530	POPTR_0002s07530 (11)	scaffold_2:5143079-5144342(+) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT1G77020.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os02g35000.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.201829.1.S1_at	A	A1TS	POPTR_0002s07540	POPTR_0002s07540 (11)	scaffold_2:5145312-5145878(-) (11)	NA	Q9LPL4	F-box protein SKP2A	AT1G21410.1	F-box/RNI-like superfamily protein 	LOC_Os05g35110.1	"OsFBL22 - F-box domain and LRR containing protein, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.201829.1.S1_s_at	A	A1TS	POPTR_0002s07540	POPTR_0002s07540 (11)	scaffold_2:5145378-5145727(-) (11)	NA	Q9LPL4	F-box protein SKP2A	AT1G21410.1	F-box/RNI-like superfamily protein 	LOC_Os05g35110.1	"OsFBL22 - F-box domain and LRR containing protein, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.201830.1.S1_s_at	A	A1TS	POPTR_0002s07550	POPTR_0002s07550 (11)	scaffold_2:5150966-5151410(-) (11)	NA	NA	NA	AT1G76990.5	ACT domain repeat 3 	LOC_Os02g34990.2	"ACT domain containing protein, putative, expressed"	Medtr5g049410.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.201831.1.S1_s_at	A	A1MS	POPTR_0002s07570	POPTR_0002s07570 (11)	scaffold_2:5179028-5179661(-) (11)	NA	Q9LP03	"Pentatricopeptide repeat-containing protein At1g43980, mitochondrial"	AT1G43980.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g32090.1	"pentatricopeptide, putative"	Medtr5g008630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201832.1.S1_at	A	A1TS	POPTR_0002s07580	POPTR_0002s07580 (11)	scaffold_2:5183481-5183881(-) (11)	NA	O49287	"Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial"	AT1G77010.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g63260.3	"pentatricopeptide, putative, expressed"	Medtr8g089650.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201833.1.S1_at	A	A1TS	POPTR_0002s07590	POPTR_0002s07590 (11)	scaffold_2:5187643-5188133(-) (11)	NA	Q9LRV2	Pentatricopeptide repeat-containing protein At3g26540	AT3G26540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g35650.1	"pentatricopeptide, putative, expressed"	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201835.1.S1_at	A	A1TS	POPTR_0002s07720	POPTR_0002s07720 (11)	scaffold_2:5294175-5296483(+) (11)	NA	Q5M990	Tetratricopeptide repeat protein 33	AT1G77230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g34830.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201836.1.S1_at	A	A1MS	POPTR_0002s07730	POPTR_0002s07730 (11)	scaffold_2:5297834-5298970(+) (11)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.201837.1.S1_at	A	A1TS	POPTR_0002s07740	POPTR_0002s07740 (11)	scaffold_2:5300568-5301125(-) (11)	NA	Q6PDK2	Histone-lysine N-methyltransferase MLL2	AT1G77250.1	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os08g01420.1	"PHD-finger domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201838.1.S1_at	A	A1TS	POPTR_0002s07750	POPTR_0002s07750 (9)	scaffold_2:5310976-5311078(+) (9)	NA	P34568	BTB and MATH domain-containing protein 43	AT4G08455.1	BTB/POZ domain-containing protein 	LOC_Os07g15490.1	"C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed"	Medtr3g097300.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.201839.1.S1_at	A	A1TS	POPTR_0002s07760	POPTR_0002s07760 (11)	scaffold_2:5312349-5313150(-) (11)	NA	Q94KE1	Probable methyltransferase PMT10	AT1G77260.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g62800.1	"methyltransferase, putative, expressed"	Medtr3g092020.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.201840.1.S1_at	A	A1TS	POPTR_0002s07780	POPTR_0002s07780 (11)	scaffold_2:5333664-5334068(-) (11)	NA	Q9LPK5	Probable calcium-binding protein CML44	AT1G21550.1	Calcium-binding EF-hand family protein 	LOC_Os12g12730.1	"OsCML28 - Calmodulin-related calcium sensor protein, expressed"	Medtr1g037320.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201841.1.S1_at	A	A1TS	POPTR_0002s07800	POPTR_0002s07800 (11)	scaffold_2:5348510-5349749(+) (11)	NA	NA	NA	AT1G21560.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1). 	LOC_Os05g34920.1	expressed protein	Medtr2g010890.1	Inorganic pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201842.1.S1_at	A	A1TS	POPTR_0002s07810	POPTR_0002s07810 (11)	scaffold_2:5352748-5353667(-) (11)	NA	Q3ED78	Zinc finger CCCH domain-containing protein 7	AT1G21580.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os06g43120.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.201843.1.S1_at	A	A1TS	POPTR_0002s07820	POPTR_0002s07820 (11)	scaffold_2:5363591-5364417(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT1G77280.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os11g08950.1	"protein kinase family protein, putative, expressed"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201844.1.S1_at	A	A2TS	POPTR_0002s07840	POPTR_0002s07840 (11)//POPTR_0002s07860 (11)	scaffold_2:5389045-5389637(-) (11)//scaffold_2:5394604-5395196(-) (11)	POPTR_0002s07870 (7)	O60113	Uncharacterized amino-acid permease C15C4.04c	AT2G01170.1	bidirectional amino acid transporter 1 	LOC_Os04g35540.1	"amino acid permease family protein, putative, expressed"	AC235665_40.1	Amino acid/polyamine transporter I AC235665.2 219297-222930 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201846.1.S1_at	A	A1TS	POPTR_0002s07900	POPTR_0002s07900 (10)	scaffold_2:5434032-5434382(-) (10)	NA	NA	NA	AT1G21610.2	wound-responsive family protein 	LOC_Os01g66050.1	"wound-responsive family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201847.1.S1_at	A	A1TS	POPTR_0002s07910	POPTR_0002s07910 (11)	scaffold_2:5442723-5444192(+) (11)	NA	NA	NA	AT1G21600.2	plastid transcriptionally active 6 	LOC_Os11g01890.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201848.1.S1_at	A	A1TS	POPTR_0002s07920	POPTR_0002s07920 (11)	scaffold_2:5453061-5453301(+) (11)	NA	Q07474	Floral homeotic protein PMADS 2	AT5G20240.1	K-box region and MADS-box transcription factor family protein  	LOC_Os05g34940.2	"OsMADS4 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g154110.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.201849.1.S1_at	A	A1MS	POPTR_0002s07930	POPTR_0002s07930 (11)	scaffold_2:5461619-5462350(+) (11)	NA	Q2LAE1	Histone-lysine N-methyltransferase ASHH2	AT1G77300.1	histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) 	LOC_Os02g34850.1	"histone-lysine N-methyltransferase ASHH2, putative, expressed"	Medtr1g124410.1	Nuclear protein SET; SET-related region; AWS 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.201850.1.S1_at	A	A1MS	POPTR_0002s07930	POPTR_0002s07930 (11)	scaffold_2:5471708-5471766(+) (11)	NA	Q2LAE1	Histone-lysine N-methyltransferase ASHH2	AT1G77300.1	histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) 	LOC_Os02g34850.1	"histone-lysine N-methyltransferase ASHH2, putative, expressed"	Medtr1g124410.1	Nuclear protein SET; SET-related region; AWS 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.201850.1.S1_s_at	A	A1TS	POPTR_0002s07930	POPTR_0002s07930 (11)	scaffold_2:5470381-5471487(+) (11)	NA	Q2LAE1	Histone-lysine N-methyltransferase ASHH2	AT1G77300.1	histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) 	LOC_Os02g34850.1	"histone-lysine N-methyltransferase ASHH2, putative, expressed"	Medtr1g124410.1	Nuclear protein SET; SET-related region; AWS 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.201851.1.S1_s_at	A	A1TS	POPTR_0002s07940	POPTR_0002s07940 (11)	scaffold_2:5486426-5487964(+) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT1G21660.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g25320.1	"auxilin, putative, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201852.1.S1_at	A	A1TS	POPTR_0002s07950	POPTR_0002s07950 (11)	scaffold_2:5488539-5489085(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201853.1.S1_at	A	A1TS	POPTR_0002s08120	POPTR_0002s08120 (11)	scaffold_2:5613673-5614518(-) (11)	NA	Q8GX69	Beta-galactosidase 16	AT1G77410.1	beta-galactosidase 16 	LOC_Os05g35360.1	"beta-galactosidase 7 precursor, putative, expressed"	Medtr3g142640.1	Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.201854.1.S1_at	A	A1TS	POPTR_0002s08130	POPTR_0002s08130 (11)	scaffold_2:5624776-5625125(+) (11)	NA	Q9XI05	Proteasome subunit beta type-3-A	AT1G21720.1	proteasome beta subunit C1 	LOC_Os06g43570.1	"peptidase, T1 family, putative, expressed"	Medtr7g105310.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.201855.1.S1_at	A	A1TS	POPTR_0002s08140	POPTR_0002s08140 (11)	scaffold_2:5628776-5629345(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT3G47180.1	RING/U-box superfamily protein 	LOC_Os09g36460.1	"zinc RING finger protein, putative, expressed"	Medtr3g100770.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201856.1.S1_at	A	A1TS	POPTR_0002s08160	POPTR_0002s08160 (11)	scaffold_2:5651260-5652282(+) (11)	NA	NA	NA	AT1G77460.2	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein 	LOC_Os11g08090.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201857.1.S1_at	A	A1TS	POPTR_0002s08170	POPTR_0002s08170 (11)	scaffold_2:5653476-5653521(-) (11)	NA	Q9D0F6	Replication factor C subunit 5	AT1G77470.1	replication factor C subunit 3 	LOC_Os02g53500.2	"RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed"	Medtr3g100750.1	"AAA ATPase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
PtpAffx.201858.1.S1_at	A	A1TS	POPTR_0002s08180	POPTR_0002s08180 (11)	scaffold_2:5672542-5674776(+) (11)	NA	Q6S001	Kinesin-related protein 11	AT1G21730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53520.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g112390.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.201859.1.S1_at	A	A1TS	POPTR_0002s08180	POPTR_0002s08180 (11)	scaffold_2:5677893-5678896(+) (11)	NA	Q6S001	Kinesin-related protein 11	AT1G21730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53520.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g112390.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.201860.1.S1_at	A	A1TS	POPTR_0002s08220	POPTR_0002s08220 (11)	scaffold_2:5700643-5701527(+) (11)	NA	P59910	DnaJ homolog subfamily B member 13	AT1G11040.1	HSP40/DnaJ peptide-binding protein 	LOC_Os01g65480.1	"dnaJ domain containing protein, expressed"	Medtr3g100740.1	"Chaperone DnaJ, C-terminal "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	NA
PtpAffx.201861.1.S1_at	A	A1TS	POPTR_0002s08230	POPTR_0002s08230 (11)	scaffold_2:5702328-5703744(-) (11)	NA	Q70DU8	Aldehyde dehydrogenase family 3 member H1	AT1G44170.2	aldehyde dehydrogenase 3H1 	LOC_Os11g08300.1	"aldehyde dehydrogenase, putative, expressed"	Medtr3g100730.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.201863.1.S1_at	A	A1TS	POPTR_0002s08360	POPTR_0002s08360 (11)	scaffold_2:5825822-5826236(+) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT1G18760.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os12g04590.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g100800.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201864.1.S1_at	A	A1TS	POPTR_0002s08400	POPTR_0002s08400 (11)	scaffold_2:5847264-5847372(-) (11)	NA	Q8LLE5	Filament-like plant protein (Fragment)	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os11g06910.2	"myosin heavy chain-related, putative, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201865.1.S1_at	A	A1TS	POPTR_0002s08460	POPTR_0002s08460 (11)	scaffold_2:5902731-5903849(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201866.1.S1_at	A	A1TS	POPTR_0002s08470	POPTR_0002s08470 (11)	scaffold_2:5920236-5921417(-) (11)	NA	Q5F3V3	Sister chromatid cohesion protein PDS5 homolog A	AT1G77600.2	ARM repeat superfamily protein 	LOC_Os01g64900.1	"HEAT, putative, expressed"	Medtr2g032740.1	"HEAT, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201868.1.S1_at	A	A1TS	POPTR_0002s08510	POPTR_0002s08510 (11)	scaffold_2:5946160-5946748(-) (11)	NA	Q4QY64	ATPase family AAA domain-containing protein 5	AT1G77620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g15580.1	"AT hook motif family protein, expressed"	Medtr1g037360.1	"nucleoside-triphosphatase/ nucleotide binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201870.1.S1_at	A	A1TS	POPTR_0002s08550	POPTR_0002s08550 (11)	scaffold_2:5976711-5977670(+) (11)	NA	NA	NA	AT4G08310.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins in 1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes - 15245 (source: NCBI BLink). 	LOC_Os11g34190.1	expressed protein	Medtr3g097550.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201871.1.S1_at	A	A1TS	POPTR_0002s08600	POPTR_0002s08600 (10)	scaffold_2:6014374-6014740(+) (10)	NA	Q99JW2	Aminoacylase-1	AT1G44820.1	Peptidase M20/M25/M40 family protein 	LOC_Os06g10770.1	"peptidase, putative, expressed"	Medtr5g065740.1	N-acyl-L-amino-acid amidohydrolase 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.201873.1.S1_at	A	A1TS	POPTR_0002s08630	POPTR_0002s08630 (11)	scaffold_2:6036702-6037288(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT1G60360.1	RING/U-box superfamily protein 	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g097710.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201875.1.S1_s_at	A	A1TS	POPTR_0002s08660	POPTR_0002s08660 (11)	scaffold_2:6071204-6071685(-) (11)	NA	Q5NE24	Nodulation-signaling pathway 2 protein	AT4G08250.1	GRAS family transcription factor 	LOC_Os03g15680.1	"nodulation-signaling pathway 2 protein, putative"	Medtr3g097800.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201876.1.S1_at	A	A1TS	POPTR_0002s08700	POPTR_0002s08700 (10)	scaffold_2:6107741-6108240(+) (11)	NA	O65238	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370	AT5G35370.1	S-locus lectin protein kinase family protein 	LOC_Os09g28180.1	"D-mannose binding lectin family protein, expressed"	Medtr3g097890.1	Protein kinase; Curculin-like (mannose-binding) lectin; N/apple PAN 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201877.1.S1_at	A	A1TS	POPTR_0002s08720	POPTR_0002s08720 (11)	scaffold_2:6121257-6122458(+) (11)	NA	Q07512	Flavonol synthase/flavanone 3-hydroxylase	AT5G08640.2	flavonol synthase 1 	LOC_Os02g52840.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g097910.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.201878.1.S1_at	A	A1TS	POPTR_0002s08730	POPTR_0002s08730 (11)	scaffold_2:6124752-6125373(-) (11)	NA	NA	NA	AT2G41705.2	camphor resistance CrcB family protein 	LOC_Os10g41749.5	"crcB-like protein, expressed"	Medtr3g097920.1	Camphor resistance CrcB protein 	NA	NA	GO:0016020|membrane
PtpAffx.201879.1.S1_at	A	A1TS	POPTR_0002s08740	POPTR_0002s08740 (11)	scaffold_2:6134548-6135098(+) (11)	NA	Q38896	Glycine-rich protein 2b	AT4G36020.1	cold shock domain protein 1 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.201880.1.S1_s_at	A	A1TS	POPTR_0002s08760	POPTR_0002s08760 (11)	scaffold_2:6151786-6152208(+) (11)	NA	P50699	Thaumatin-like protein	AT1G77700.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os04g59370.1	"thaumatin, putative, expressed"	Medtr5g065310.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201881.1.S1_at	A	A1TS	POPTR_0002s08790	POPTR_0002s08790 (11)	scaffold_2:6180183-6181817(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G38131.1	O-fucosyltransferase family protein 	LOC_Os12g07540.1	"growth regulator related protein, putative, expressed"	Medtr5g065110.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201882.1.S1_at	A	A1TS	POPTR_0002s08800	POPTR_0002s08800 (11)	scaffold_2:6186233-6186611(+) (11)	NA	Q9SUF9	Pentatricopeptide repeat-containing protein At4g08210	AT4G08210.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os12g36620.1	"pentatricopeptide, putative, expressed"	Medtr3g097980.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201883.1.S1_at	A	A1TS	POPTR_0002s08810	POPTR_0002s08810 (11)	scaffold_2:6192594-6193118(-) (11)	NA	NA	NA	AT1G75710.1	C2H2-like zinc finger protein 	LOC_Os04g59380.1	"ZOS4-14 - C2H2 zinc finger protein, expressed"	Medtr3g098000.1	"T2E6.3, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.201884.1.S1_at	A	A1TS	POPTR_0002s08850	POPTR_0002s08850 (11)	scaffold_2:6226377-6227227(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201885.1.S1_at	A	A1TS	POPTR_0002s08890	POPTR_0002s08890 (11)	scaffold_2:6281060-6282286(+) (10)	NA	A2WY46	Protein terminal ear1 homolog	AT1G37140.1	MEI2 C-terminal RRM only like 1 	LOC_Os09g36140.1	"RNA recognition motif 2 domain containing protein, expressed"	Medtr3g102670.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201886.1.S1_at	A	A1TS	POPTR_0002s08970	POPTR_0002s08970 (11)	scaffold_2:6345802-6346361(-) (11)	NA	Q03773	"Glucan endo-1,3-beta-glucosidase"	AT1G77780.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g58730.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr7g092900.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.201888.1.S1_at	A	A1MS	POPTR_0002s09030	POPTR_0002s09030 (11)	scaffold_2:6391563-6392135(-) (11)	NA	NA	NA	AT3G19770.1	Vacuolar sorting protein 9 (VPS9) domain 	LOC_Os03g15650.1	"vacuolar sorting protein, putative, expressed"	Medtr3g010530.1	Vacuolar sorting protein 9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201889.1.S1_at	A	A1TS	POPTR_0002s09040	POPTR_0002s09040 (11)	scaffold_2:6396026-6396967(-) (11)	NA	Q6NQB7	"Beta-1,3-galactosyltransferase 7"	AT1G77810.2	Galactosyltransferase family protein 	LOC_Os02g35870.2	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.201890.1.S1_at	A	A1TS	POPTR_0002s09050	POPTR_0002s09050 (11)	scaffold_2:6411411-6411832(+) (11)	NA	Q84WU6	Auxin response factor 17	AT1G77850.1	auxin response factor 17 	LOC_Os10g33940.1	"auxin response factor 18, putative, expressed"	Medtr5g044210.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.201891.1.S1_at	A	A1TS	POPTR_0002s09050	POPTR_0002s09050 (11)	scaffold_2:6413830-6414097(+) (11)	NA	Q84WU6	Auxin response factor 17	AT1G77850.1	auxin response factor 17 	LOC_Os10g33940.1	"auxin response factor 18, putative, expressed"	Medtr5g044210.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.201893.1.S1_at	A	A1TS	POPTR_0002s09090	POPTR_0002s09090 (11)	scaffold_2:6432015-6432108(-) (11)	NA	NA	NA	AT1G22030.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g01400.1	expressed protein	Medtr4g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201893.1.S1_x_at	A	A1TS	POPTR_0002s09090	POPTR_0002s09090 (11)	scaffold_2:6431865-6432106(-) (11)	NA	NA	NA	AT1G22030.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g01400.1	expressed protein	Medtr4g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201894.1.S1_at	A	A1TS	POPTR_0002s09100	POPTR_0002s09100 (11)	scaffold_2:6448419-6449282(-) (11)	NA	Q6GMF8	Rhomboid family member 1	AT1G77860.1	Rhomboid-related intramembrane serine protease family protein 	LOC_Os11g47840.1	"OsRhmbd18 - Putative Rhomboid homologue, expressed"	Medtr1g129260.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.201895.1.S1_at	A	A1TS	POPTR_0002s09110	POPTR_0002s09110 (11)	scaffold_2:6454414-6455529(+) (11)	NA	Q9LZM3	Phosphopantothenate--cysteine ligase 2	AT1G12350.1	4-phospho-panto-thenoylcysteine synthetase 	LOC_Os02g36550.1	"phosphopantothenate--cysteine ligase, putative, expressed"	Medtr8g116490.1	"DNA/pantothenate metabolism flavoprotein, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201896.1.S1_at	A	A1TS	POPTR_0002s09140	POPTR_0002s09140 (11)	scaffold_2:6479086-6480121(+) (11)	NA	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os01g59760.1	"bZIP transcription factor, putative, expressed"	Medtr7g104860.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.201897.1.S1_at	A	A1TS	POPTR_0002s09150	POPTR_0002s09150 (11)	scaffold_2:6482545-6483644(-) (11)	NA	NA	NA	AT4G08540.1	DNA-directed RNA polymerase II protein 	LOC_Os07g43322.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201899.1.S1_at	A	A1TS	POPTR_0002s09180	POPTR_0002s09180 (9)	scaffold_2:6502628-6503862(+) (11)	NA	NA	NA	AT4G08550.1	electron carriers;protein disulfide oxidoreductases 	LOC_Os06g12030.2	"glutaredoxin domain containing protein, putative, expressed"	AC233100_25.1	Protein of unknown function DUF547 AC233100.6 89976-92470 E EGN_Mt090430 200	GO:0007242|intracellular signaling cascade||GO:0045454|cell redox homeostasis||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.2019.1.S1_a_at	A	A2TS	POPTR_0001s30540	POPTR_0009s09580 (10)//POPTR_0001s30540 (10)	scaffold_1:29013455-29013488(-) (10)//scaffold_9:8433836-8433869(-) (10)	NA	NA	NA	AT2G14910.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14970.1); Has 605 Blast hits to 425 proteins in 102 species: Archae - 0; Bacteria - 300; Metazoa - 25; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink). 	LOC_Os03g41080.1	"seed maturation protein PM23, putative, expressed"	Medtr4g097080.1	"seed maturation-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2019.1.S1_at	A	A1TS	POPTR_0009s09580	POPTR_0009s09580 (11)	scaffold_9:8433489-8433980(-) (11)	NA	NA	NA	AT2G14910.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14970.1); Has 605 Blast hits to 425 proteins in 102 species: Archae - 0; Bacteria - 300; Metazoa - 25; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink). 	LOC_Os03g41080.1	"seed maturation protein PM23, putative, expressed"	Medtr4g097080.1	"seed maturation-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2019.3.S1_a_at	A	A1TS	POPTR_0001s30540	POPTR_0001s30540 (11)	scaffold_1:29013566-29013907(-) (11)	NA	NA	NA	AT2G14910.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14970.1); Has 605 Blast hits to 425 proteins in 102 species: Archae - 0; Bacteria - 300; Metazoa - 25; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink). 	LOC_Os03g41080.1	"seed maturation protein PM23, putative, expressed"	Medtr4g097080.1	"seed maturation-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201901.1.S1_at	A	A1MS	POPTR_0002s09230	POPTR_0002s09230 (10)	scaffold_2:6541015-6542052(+) (11)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os10g21940.1	expressed protein	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201902.1.S1_at	A	A1TS	POPTR_0002s09230	POPTR_0002s09230 (11)	scaffold_2:6548033-6548408(+) (11)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os10g21940.1	expressed protein	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201903.1.S1_at	A	A1TS	POPTR_0002s09240	POPTR_0002s09240 (11)	scaffold_2:6552250-6553486(-) (11)	NA	Q8GWJ6	Membrane-anchored ubiquitin-fold protein 6	AT1G22050.1	membrane-anchored ubiquitin-fold protein 6 precursor 	LOC_Os03g31290.2	"membrane-anchored ubiquitin-fold protein, putative, expressed"	Medtr6g014210.1	"Membrane-anchored ubiquitin-fold protein 1 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201904.1.S1_at	A	A1TS	POPTR_0002s09260	POPTR_0002s09260 (11)	scaffold_2:6562171-6562671(-) (11)	NA	NA	NA	AT1G22110.1	structural constituent of ribosome 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201905.1.S1_at	A	A1TS	POPTR_0002s09300	POPTR_0002s09300 (11)	scaffold_2:6588005-6588546(-) (11)	NA	P53393	Low affinity sulfate transporter 3	AT1G77990.1	STAS domain / Sulfate transporter family 	LOC_Os03g09940.1	"sulfate transporter, putative, expressed"	Medtr3g101160.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.201905.1.S1_s_at	A	A1TS	POPTR_0002s09300	POPTR_0002s09300 (11)	scaffold_2:6588048-6589691(-) (11)	NA	P53393	Low affinity sulfate transporter 3	AT1G77990.1	STAS domain / Sulfate transporter family 	LOC_Os03g09940.1	"sulfate transporter, putative, expressed"	Medtr3g101160.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.201906.1.S1_at	A	A1TS	POPTR_0002s09310	POPTR_0002s09310 (11)	scaffold_2:6612936-6614321(+) (11)	NA	Q9FEP7	Sulfate transporter 1.3	AT1G22150.1	sulfate transporter 1;3 	LOC_Os03g09970.4	"sulfate transporter, putative, expressed"	CU651589_4.1	Sulphate transporter CU651589.4 23367-27023 H EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.201907.1.S1_at	A	A1TS	POPTR_0002s09320	POPTR_0002s09320 (11)	scaffold_2:6622137-6623144(+) (11)	NA	Q8YN91	tRNA modification GTPase mnmE	AT1G78010.1	"tRNA modification GTPase, putative "	LOC_Os08g31460.1	"GTPase of unknown function domain containing protein, putative, expressed"	CU651589_6.1	"GTP-binding protein, HSR1-related CU651589.4 33538-37140 E EGN_Mt090430 200"	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.201909.1.S1_at	A	A1TS	POPTR_0002s09360	POPTR_0002s09360 (10)	scaffold_2:6669581-6670191(-) (11)	NA	Q5B5X8	"Probable glucan 1,3-beta-glucosidase A"	NA	NA	LOC_Os05g15510.2	"cellulase, putative, expressed"	Medtr3g010400.1	"Glycoside hydrolase, family 5; Actin-crosslinking proteins "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201910.1.S1_at	A	A1TS	POPTR_0002s09380	POPTR_0002s09380 (11)	scaffold_2:6676907-6677376(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201911.1.S1_at	A	A1TS	POPTR_0002s09390	POPTR_0002s09390 (11)	scaffold_2:6686220-6688270(+) (11)	NA	Q6MEW4	"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase"	AT1G22170.1	Phosphoglycerate mutase family protein 	LOC_Os02g51590.1	"phosphoglycerate mutase, putative, expressed"	CU651566_7.1	Phosphoglycerate mutase 1 CU651566.9 30664-34534 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201911.1.S1_s_at	A	A2TS	POPTR_0002s09390	POPTR_0005s16610 (11)//POPTR_0002s09390 (11)	scaffold_2:6686790-6687403(+) (11)//scaffold_5:13588925-13589526(+) (11)	NA	Q6MEW4	"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase"	AT1G22170.1	Phosphoglycerate mutase family protein 	LOC_Os02g51590.1	"phosphoglycerate mutase, putative, expressed"	CU651566_7.1	Phosphoglycerate mutase 1 CU651566.9 30664-34534 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201912.1.S1_at	A	A1TS	POPTR_0002s09410	POPTR_0002s09410 (11)	scaffold_2:6702215-6703001(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201913.1.S1_at	A	A1TS	POPTR_0002s09410	POPTR_0002s09410 (9)	scaffold_2:6705310-6705457(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201913.1.S1_x_at	A	A1TS	POPTR_0002s09410	POPTR_0002s09410 (10)	scaffold_2:6705316-6705507(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201914.1.S1_at	A	A1TS	POPTR_0002s09430	POPTR_0002s09430 (11)	scaffold_2:6722727-6723965(+) (11)	NA	C7G3A0	Metallophosphoesterase 1	NA	NA	LOC_Os06g11910.1	expressed protein	Medtr8g024590.1	hypothetical protein 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.201914.1.S1_s_at	A	A1TS	POPTR_0002s09430	POPTR_0002s09430 (11)	scaffold_2:6722434-6722739(+) (11)	NA	C7G3A0	Metallophosphoesterase 1	NA	NA	LOC_Os06g11910.1	expressed protein	Medtr8g024590.1	hypothetical protein 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.201914.1.S1_x_at	A	A1TS	POPTR_0002s09430	POPTR_0002s09430 (11)	scaffold_2:6722463-6723965(+) (11)	NA	C7G3A0	Metallophosphoesterase 1	NA	NA	LOC_Os06g11910.1	expressed protein	Medtr8g024590.1	hypothetical protein 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.201915.1.S1_at	A	A1TS	POPTR_0002s09440	POPTR_0002s09440 (11)	scaffold_2:6726587-6727016(-) (11)	NA	Q9SGZ5	Probable beta-D-xylosidase 7	AT1G78060.1	Glycosyl hydrolase family protein 	LOC_Os02g51620.1	"glycosyl hydrolase family 3 protein, putative, expressed"	CU651566_9.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal CU651566.9 51724-46198 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.201916.1.S1_at	A	A1TS	POPTR_0002s09510	POPTR_0002s09510 (11)	scaffold_2:6805495-6806624(+) (11)	NA	O50401	Trehalose-phosphate phosphatase	AT5G65140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g31630.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr5g072070.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.201917.1.S1_at	A	A1TS	POPTR_0002s09520	POPTR_0002s09520 (11)	scaffold_2:6820164-6820599(+) (11)	NA	Q9C9S2	F-box protein At1g78100	AT1G78100.1	F-box family protein 	LOC_Os05g41130.1	"OsFBX168 - F-box domain containing protein, expressed"	Medtr4g031470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201918.1.S1_at	A	A1TS	POPTR_0002s09530	POPTR_0002s09530 (11)	scaffold_2:6828581-6828958(+) (11)	NA	NA	NA	AT1G78110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). 	LOC_Os02g51720.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201918.1.S1_x_at	A	A1TS	POPTR_0002s09530	POPTR_0002s09530 (11)	scaffold_2:6828581-6829851(+) (11)	NA	NA	NA	AT1G78110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). 	LOC_Os02g51720.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201919.1.S1_at	A	A1TS	POPTR_0002s09540	POPTR_0002s09540 (11)	scaffold_2:6831467-6832165(-) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT5G65160.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g51730.1	"dnaJ homolog subfamily C member 7, putative, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201920.1.S1_at	A	A1TS	POPTR_0002s09560	POPTR_0002s09560 (11)	scaffold_2:6855880-6856512(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201921.1.S1_at	A	A1TS	POPTR_0002s09600	POPTR_0002s09600 (11)	scaffold_2:6879857-6882373(+) (11)	NA	Q9C9R6	"Putative pumilio homolog 7, chloroplastic"	AT1G78160.1	pumilio 7 	LOC_Os12g31000.1	"pumilio-family RNA binding repeat domain containing protein, expressed"	Medtr5g072550.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.201922.1.S1_at	A	A1TS	POPTR_0002s09650	POPTR_0002s09650 (11)	scaffold_2:6914635-6915328(+) (11)	NA	Q93Y91	Sugar transport protein 5	AT1G34580.1	Major facilitator superfamily protein 	LOC_Os04g37980.1	"transporter family protein, putative, expressed"	Medtr3g009520.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.201923.1.S1_at	A	A1TS	POPTR_0002s09670	POPTR_0002s09670 (11)	scaffold_2:6926264-6926641(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201924.1.S1_at	A	A1TS	POPTR_0002s09680	POPTR_0002s09680 (11)	scaffold_2:6931714-6933871(-) (11)	NA	Q9LME2	Synaptonemal complex protein 1	AT1G22260.1	Myosin heavy chain-related protein 	LOC_Os04g37960.1	"synaptonemal complex protein 2, putative, expressed"	Medtr5g072620.1	"Synaptonemal complex protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201925.1.S1_at	A	A1TS	POPTR_0002s09690	POPTR_0002s09690 (11)	scaffold_2:6948832-6949281(+) (11)	NA	NA	NA	AT1G34630.1	BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	LOC_Os03g09090.1	expressed protein	Medtr2g052140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201926.1.S1_at	A	A1TS	POPTR_0002s09710	POPTR_0002s09710 (11)	scaffold_2:6951459-6952050(-) (11)	NA	NA	NA	AT1G34640.1	peptidases 	LOC_Os07g43010.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201927.1.S1_at	A	A1TS	POPTR_0002s09760	POPTR_0002s09760 (11)	scaffold_2:7002699-7003364(+) (11)	NA	Q1LZ86	Monoacylglycerol lipase ABHD6	AT1G78210.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g42994.1	"hydrolase, putative, expressed"	Medtr5g072880.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201928.1.S1_at	A	A1TS	POPTR_0002s09790	POPTR_0002s09790 (11)	scaffold_2:7015022-7015972(-) (11)	NA	NA	NA	AT1G22310.2	methyl-CPG-binding domain 8 	LOC_Os08g37920.1	"ZOS8-09 - C2H2 zinc finger protein, expressed"	Medtr2g009110.1	"Zinc finger, C2H2-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.201929.1.S1_at	A	A1TS	POPTR_0002s09810	POPTR_0002s09810 (11)	scaffold_2:7028813-7029250(-) (11)	NA	NA	NA	AT4G08940.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os09g29760.1	expressed protein	Medtr3g138900.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20193.1.S1_at	A	A1TS	POPTR_0018s05140	POPTR_0018s05140 (11)	scaffold_18:4596295-4596697(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G11850.1	Protein kinase superfamily protein 	LOC_Os02g12810.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.20193.2.S1_s_at	A	A1TS	POPTR_0006s24580	POPTR_0006s24580 (11)	scaffold_6:23183885-23184432(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G11850.1	Protein kinase superfamily protein 	LOC_Os02g12810.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201930.1.S1_at	A	A1TS	POPTR_0002s09820	POPTR_0002s09820 (11)	scaffold_2:7033754-7034948(-) (11)	NA	Q9C9Q8	Probable pectin methyltransferase QUA2	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr5g072950.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.201931.1.S1_at	A	A1TS	POPTR_0002s09830	POPTR_0002s09830 (11)	scaffold_2:7055737-7056097(+) (11)	NA	Q9H0Z9	RNA-binding protein 38	AT1G22330.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.2	"RNA recognition motif containing protein, putative, expressed"	Medtr5g073010.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201932.1.S1_at	A	A1TS	POPTR_0002s09840	POPTR_0002s09840 (11)	scaffold_2:7063944-7064563(+) (11)	NA	Q8VWG3	Protein TRANSPARENT TESTA 1	AT1G34790.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os06g40960.1	"ZOS6-05 - C2H2 zinc finger protein, expressed"	Medtr8g037110.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.201933.1.S1_at	A	A1TS	POPTR_0002s09870	POPTR_0002s09870 (11)	scaffold_2:7087866-7088205(+) (11)	NA	P27322	Heat shock cognate 70 kDa protein 2	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.6	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201935.1.S1_at	A	A1TS	POPTR_0002s09960	POPTR_0002s09960 (9)	scaffold_2:7147988-7149095(+) (10)	NA	Q9M9E8	F-box protein At1g78280	AT1G78280.1	"transferases, transferring glycosyl groups "	LOC_Os03g27250.1	"OsFBO14 - F-box and other domain containing protein, expressed"	Medtr3g150440.1	"Transcription factor jumonji, jmjC; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201936.1.S1_at	A	A1TS	POPTR_0002s09980	POPTR_0002s09980 (11)	scaffold_2:7162027-7162999(+) (11)	NA	Q9FZ95	Purine permease 3	AT1G28220.1	purine permease 3 	LOC_Os09g29239.1	"purine permease, putative, expressed"	Medtr3g150070.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.201937.1.S1_at	A	A1TS	POPTR_0002s10010	POPTR_0002s10010 (11)	scaffold_2:7190856-7191292(-) (11)	NA	NA	NA	AT1G78310.1	VQ motif-containing protein 	NA	NA	Medtr3g150400.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201938.1.S1_at	A	A1TS	POPTR_0002s10050	POPTR_0002s10050 (11)	scaffold_2:7214024-7215013(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G22460.1	O-fucosyltransferase family protein 	LOC_Os06g11600.3	"growth regulator related protein, putative, expressed"	Medtr3g150330.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201939.1.S1_s_at	A	A1TS	POPTR_0002s10060	POPTR_0002s10060 (11)	scaffold_2:7233158-7233515(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g073850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20194.1.S1_at	A	A1TS	POPTR_0004s07750	POPTR_0004s07750 (9)	scaffold_4:6373847-6374535(-) (9)	NA	O31634	Uncharacterized membrane protein yjcL	AT5G52540.1	Protein of unknown function (DUF819) 	LOC_Os06g01790.1	expressed protein	Medtr1g126520.1	Protein of unknown function DUF819 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201940.1.S1_at	A	A1TS	POPTR_0002s10090	POPTR_0002s10090 (11)	scaffold_2:7252617-7254584(-) (11)	NA	Q9BXR0	Queuine tRNA-ribosyltransferase	NA	NA	LOC_Os09g29420.1	"queuine tRNA-ribosyltransferase, putative, expressed"	Medtr5g107040.1	Queuine/other tRNA-ribosyltransferase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044260|cellular macromolecule metabolic process||GO:0008616|queuosine biosynthetic process	GO:0008479|queuine tRNA-ribosyltransferase activity	NA
PtpAffx.201941.1.S1_at	A	A1TS	POPTR_0002s10100	POPTR_0002s10100 (11)	scaffold_2:7265042-7266755(+) (11)	NA	Q3UVG3	Protein FAM91A1	AT1G35220.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 313 Blast hits to 185 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). 	LOC_Os01g19760.1	expressed protein	Medtr5g093200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201942.1.S1_at	A	A1TS	POPTR_0002s10110	POPTR_0002s10110 (11)	scaffold_2:7281140-7282116(+) (11)	NA	Q9M0S5	"Isoamylase 3, chloroplastic"	AT4G09020.1	isoamylase 3 	LOC_Os09g29404.3	"glycogen operon protein glgX, putative, expressed"	Medtr3g150300.1	"Alpha amylase, catalytic region; Pullulanase, type I; ; ; "	GO:0005975|carbohydrate metabolic process	"GO:0043169|cation binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.201942.1.S1_s_at	A	A1TS	POPTR_0002s10110	POPTR_0002s10110 (11)	scaffold_2:7281192-7282948(+) (11)	NA	Q9M0S5	"Isoamylase 3, chloroplastic"	AT4G09020.1	isoamylase 3 	LOC_Os09g29404.3	"glycogen operon protein glgX, putative, expressed"	Medtr3g150300.1	"Alpha amylase, catalytic region; Pullulanase, type I; ; ; "	GO:0005975|carbohydrate metabolic process	"GO:0043169|cation binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.201944.1.S1_at	A	A1TS	POPTR_0002s10200	POPTR_0002s10200 (11)	scaffold_2:7318750-7320193(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074010.1	"plastid-targeted protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201946.1.S1_at	A	A1TS	POPTR_0002s10220	POPTR_0002s10220 (11)	scaffold_2:7325911-7326349(+) (11)	NA	Q8LFY8	RING-H2 finger protein ATL54	AT1G72220.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g074060.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201947.1.S1_at	A	A1TS	POPTR_0002s10230	POPTR_0002s10230 (11)	scaffold_2:7334085-7334776(-) (11)	NA	Q9C7T4	Transcription factor bHLH96	AT1G72210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g08930.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr3g150170.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.201948.1.S1_at	A	A1TS	POPTR_0002s10240	POPTR_0002s10240 (11)	scaffold_2:7346588-7347995(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G65380.1	MATE efflux family protein 	LOC_Os03g08900.1	"MATE efflux family protein, putative, expressed"	Medtr5g034130.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.201949.1.S1_at	A	A1TS	POPTR_0002s10270	POPTR_0002s10270 (11)	scaffold_2:7373321-7374476(+) (11)	NA	NA	NA	AT4G33590.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33600.1); Has 126 Blast hits to 126 proteins in 35 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 21; Plants - 62; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os09g29160.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201950.1.S1_at	A	A1TS	POPTR_0002s10330	POPTR_0002s10330 (11)	scaffold_2:7420358-7420720(-) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT4G24660.1	homeobox protein 22 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g074550.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201950.1.S1_x_at	A	A1TS	POPTR_0002s10330	POPTR_0002s10330 (11)	scaffold_2:7420358-7420720(-) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT4G24660.1	homeobox protein 22 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g074550.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201951.1.S1_at	A	A1TS	POPTR_0002s10340	POPTR_0002s10340 (11)	scaffold_2:7435524-7437893(-) (11)	NA	Q8N5D0	WD and tetratricopeptide repeats protein 1	AT5G10940.2	transducin family protein / WD-40 repeat family protein 	LOC_Os03g08830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g148940.1	WD40-like; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201952.1.S1_at	A	A1TS	POPTR_0002s10370	POPTR_0002s10370 (11)	scaffold_2:7471242-7471990(-) (11)	NA	Q69QB8	Cyclin-D3-1	AT2G22490.2	Cyclin D2;1 	LOC_Os06g11410.1	"cyclin, putative, expressed"	Medtr3g148920.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.201953.1.S1_at	A	A1TS	POPTR_0002s10380	POPTR_0002s10380 (11)	scaffold_2:7486410-7486814(+) (11)	NA	Q3E9F0	Pentatricopeptide repeat-containing protein At5g18475	AT5G18475.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g26890.1	PPR repeat containing protein	Medtr3g149040.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201954.1.S1_s_at	A	A1TS	POPTR_0002s10410	POPTR_0002s10410 (11)	scaffold_2:7498582-7500829(-) (11)	NA	Q892R1	Chaperone protein dnaJ	AT2G33735.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g52270.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g074940.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.201955.1.S1_at	A	A1TS	POPTR_0002s10430	POPTR_0002s10430 (11)	scaffold_2:7515896-7516015(+) (11)	NA	NA	NA	AT4G24610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). 	LOC_Os02g52280.1	expressed protein	Medtr5g074970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201955.1.S1_x_at	A	A1TS	POPTR_0002s10430	POPTR_0002s10430 (11)	scaffold_2:7515792-7516015(+) (11)	NA	NA	NA	AT4G24610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). 	LOC_Os02g52280.1	expressed protein	Medtr5g074970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201956.1.S1_at	A	A1TS	POPTR_0002s10450	POPTR_0002s10450 (11)	scaffold_2:7549102-7549373(+) (11)	NA	Q5ZMM3	Rho GTPase-activating protein 15	AT4G24580.1	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g096580.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.201957.1.S1_s_at	A	A1TS	POPTR_0016s11450	POPTR_0016s11450 (11)	scaffold_16:10419823-10419960(-) (11)	NA	A4GYS4	Apocytochrome f	ATCG00540.1	photosynthetic electron transfer A 	LOC_Os10g21290.1	"apocytochrome f precursor, putative"	Medtr5g065380.1	Cytochrome f; GRAS transcription factor 	GO:0015979|photosynthesis	GO:0020037|heme binding||GO:0009055|electron carrier activity	GO:0031361|integral to thylakoid membrane
PtpAffx.201958.1.S1_at	A	A1TS	POPTR_0002s10470	POPTR_0002s10470 (11)	scaffold_2:7561495-7562024(+) (11)	NA	NA	NA	AT1G58120.1	BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g42834.1	"retrotransposon protein, putative, unclassified"	Medtr5g075010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201959.1.S1_at	A	A1TS	POPTR_0002s10510	POPTR_0002s10510 (11)	scaffold_2:7587118-7587866(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201960.1.S1_at	A	A1TS	POPTR_0002s10520	POPTR_0002s10520 (11)	scaffold_2:7599282-7599853(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT5G49700.1	Predicted AT-hook DNA-binding family protein 	LOC_Os09g28930.1	"DNA binding protein, putative"	Medtr3g149230.1	Predicted AT-hook DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201962.1.S1_at	A	A1TS	POPTR_0002s10560	POPTR_0002s10560 (11)	scaffold_2:7647159-7647791(-) (11)	NA	P48353	Protein HLJ1	AT2G01710.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g27460.3	"heat shock protein DnaJ, putative, expressed"	Medtr5g075120.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding||GO:0003677|DNA binding	NA
PtpAffx.201962.1.S1_x_at	A	A1TS	POPTR_0002s10560	POPTR_0002s10560 (11)	scaffold_2:7647177-7647791(-) (11)	NA	P48353	Protein HLJ1	AT2G01710.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g27460.3	"heat shock protein DnaJ, putative, expressed"	Medtr5g075120.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding||GO:0003677|DNA binding	NA
PtpAffx.201963.1.S1_at	A	A1TS	POPTR_0002s10590	POPTR_0002s10590 (11)	scaffold_2:7684879-7685245(+) (11)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.2	Cysteine proteinases superfamily protein 	LOC_Os05g11770.1	"ulp1 protease family protein, putative, expressed"	Medtr3g149330.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.201964.1.S1_at	A	A1TS	POPTR_0002s10610	POPTR_0002s10610 (11)	scaffold_2:7693792-7694333(-) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT1G58200.2	MSCS-like 3 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.201966.1.S1_at	A	A1TS	POPTR_0002s10660	POPTR_0002s10660 (11)	scaffold_2:7743769-7744352(+) (11)	NA	NA	NA	AT1G58210.1	kinase interacting family protein 	LOC_Os01g61910.1	"KIP1, putative, expressed"	Medtr3g149530.1	KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201967.1.S1_at	A	A1TS	POPTR_0002s10730	POPTR_0002s10730 (10)	scaffold_2:7794027-7801721(+) (11)	NA	Q9FE59	Sucrose transport protein SUC4	AT1G09960.1	sucrose transporter 4 	LOC_Os12g44380.1	"sucrose transporter, putativ, expressed"	Medtr5g076420.1	"Sucrose/H+ symporter, plant; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201968.1.S1_at	A	A1MS	POPTR_0002s10810	POPTR_0002s10810 (11)	scaffold_2:7841943-7842051(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201968.1.S1_x_at	A	A1MS	POPTR_0002s10810	POPTR_0002s10810 (11)	scaffold_2:7841943-7842090(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201969.1.S1_at	A	A1MS	POPTR_0002s10830	POPTR_0002s10830 (9)	scaffold_2:7856287-7858286(-) (10)	NA	NA	NA	AT1G27590.1	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.1); Has 109 Blast hits to 109 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g49940.2	"ESP4, putative, expressed"	Medtr3g127790.1	"T17H3.9, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20197.1.S1_at	A	A1TS	POPTR_0003s10240	POPTR_0003s10240 (9)	scaffold_3:11307960-11308479(-) (9)	NA	Q12955	Ankyrin-3	AT4G19150.1	Ankyrin repeat family protein 	LOC_Os10g43040.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	Medtr5g026960.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201970.1.S1_s_at	A	A1TS	POPTR_0002s10850	POPTR_0002s10850 (11)	scaffold_2:7873084-7873534(-) (11)	NA	Q9T074	Phosphoenolpyruvate carboxykinase [ATP]	AT4G37870.1	phosphoenolpyruvate carboxykinase 1 	LOC_Os03g15050.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	Medtr5g032160.1	Phosphoenolpyruvate carboxykinase (ATP); 	GO:0044283|small molecule biosynthetic process||GO:0006094|gluconeogenesis||GO:0044281|small molecule metabolic process	GO:0004612|phosphoenolpyruvate carboxykinase (ATP) activity||GO:0005524|ATP binding	NA
PtpAffx.201971.1.S1_at	A	A1TS	POPTR_0002s10920	POPTR_0002s10920 (11)	scaffold_2:7975860-7977588(+) (11)	NA	NA	NA	AT5G64460.8	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr3g127570.1	Phosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201972.1.S1_at	A	A1TS	POPTR_0002s10940	POPTR_0002s10940 (11)	scaffold_2:7986157-7988408(-) (11)	NA	Q4PJX1	Protein odr-4 homolog	AT3G28670.1	"oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os10g11110.1	expressed protein	Medtr3g127550.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201973.1.S1_at	A	A1TS	POPTR_0002s10950	POPTR_0002s10950 (11)	scaffold_2:7994402-7994948(+) (11)	NA	NA	NA	AT5G09620.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os02g56480.1	"PB1 domain containing protein, expressed"	Medtr2g010210.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201974.1.S1_s_at	A	A1TS	POPTR_0002s10970	POPTR_0002s10970 (11)	scaffold_2:8007221-8008148(+) (11)	NA	Q9STV4	CBL-interacting serine/threonine-protein kinase 8	AT4G24400.1	CBL-interacting protein kinase 8 	LOC_Os01g35184.2	"CAMK_KIN1/SNF1/Nim1_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g076080.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201975.1.S1_at	A	A1TS	POPTR_0002s10980	POPTR_0002s10980 (11)	scaffold_2:8008948-8009341(-) (11)	NA	A8MQA3	Pentatricopeptide repeat-containing protein At4g21065	AT4G21065.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os11g29230.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	Medtr5g076070.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201976.1.S1_at	A	A1TS	POPTR_0002s11000	POPTR_0002s11000 (11)	scaffold_2:8021689-8022236(+) (11)	NA	O04514	Oligopeptide transporter 2	AT1G09930.1	oligopeptide transporter 2 	LOC_Os01g43940.1	"oligopeptide transporter, putative"	Medtr2g010070.1	"Peptidase aspartic, active site; Oligopeptide transporter OPT superfamily "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201977.1.S1_at	A	A1TS	POPTR_0002s11010	POPTR_0002s11010 (11)	scaffold_2:8023419-8023587(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g127510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201978.1.S1_at	A	A1TS	POPTR_0002s11020	POPTR_0002s11020 (11)	scaffold_2:8027581-8028274(-) (11)	NA	Q3EDF8	Pentatricopeptide repeat-containing protein At1g09900	AT1G09900.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os02g35750.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g093590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201979.1.S1_at	A	A1TS	POPTR_0002s11030	POPTR_0002s11030 (11)	scaffold_2:8048507-8048868(-) (11)	NA	Q6EP49	MADS-box transcription factor 27	AT3G57230.1	AGAMOUS-like 16 	LOC_Os02g36924.1	"OsMADS27 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g075960.1	"Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.201979.1.S1_x_at	A	A1TS	POPTR_0002s11030	POPTR_0002s11030 (10)	scaffold_2:8048499-8048868(-) (10)	NA	Q6EP49	MADS-box transcription factor 27	AT3G57230.1	AGAMOUS-like 16 	LOC_Os02g36924.1	"OsMADS27 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g075960.1	"Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.201980.1.S1_at	A	A1TS	POPTR_0002s11070	POPTR_0002s11070 (11)	scaffold_2:8089312-8090333(+) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT1G09890.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.2	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127440.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201981.1.S1_at	A	A1TS	POPTR_0002s11080	POPTR_0002s11080 (11)	scaffold_2:8097877-8098782(+) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT1G09890.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.2	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127490.1	Galactose-binding like; Rhamnogalacturonate lyase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201982.1.S1_at	A	A1TS	POPTR_0002s11090	POPTR_0002s11090 (11)	scaffold_2:8106026-8107039(+) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT1G09890.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127440.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201983.1.S1_at	A	A1TS	POPTR_0002s11100	POPTR_0002s11100 (11)	scaffold_2:8111899-8112863(+) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT4G24430.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127440.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201984.1.S1_at	A	A1TS	POPTR_0002s11105	POPTR_0002s11105 (11)	scaffold_2:8116062-8117370(+) (11)	NA	Q9STV0	Alpha-glucan water dikinase 2	AT4G24450.1	"phosphoglucan, water dikinase "	LOC_Os06g30310.1	"alpha-glucan water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201985.1.S1_at	A	A1TS	POPTR_0002s11130	POPTR_0002s11130 (11)	scaffold_2:8170671-8170832(+) (11)	NA	NA	NA	AT1G58250.1	Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain 	LOC_Os03g23030.1	"aberrant pollen transmission 1, putative, expressed"	Medtr5g075570.1	"SAB, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201986.1.S1_at	A	A1TS	POPTR_0002s11160	POPTR_0002s11160 (9)	scaffold_2:8200435-8200816(-) (10)	NA	Q54U63	BEACH domain-containing protein lvsC	AT1G58230.1	binding 	LOC_Os02g06720.1	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201987.1.S1_at	A	A1TS	POPTR_0002s11160	POPTR_0002s11160 (11)	scaffold_2:8203716-8204135(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT1G58230.1	binding 	LOC_Os02g06720.1	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201988.1.S1_at	A	A1TS	POPTR_0002s11160	POPTR_0002s11160 (11)	scaffold_2:8208657-8209467(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT1G58230.1	binding 	LOC_Os02g06720.1	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201990.1.S1_at	A	A1TS	POPTR_0002s11170	POPTR_0002s11170 (11)	scaffold_2:8242300-8242784(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201991.1.S1_at	A	A1TS	POPTR_0002s11180	POPTR_0002s11180 (11)	scaffold_2:8251710-8252126(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT4G24480.1	Protein kinase superfamily protein 	LOC_Os04g52140.1	"protein kinase domain containing protein, expressed"	Medtr3g149670.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201992.1.S1_at	A	A1TS	POPTR_0002s11180	POPTR_0002s11180 (11)	scaffold_2:8252711-8253159(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT4G24480.1	Protein kinase superfamily protein 	LOC_Os04g52140.1	"protein kinase domain containing protein, expressed"	Medtr3g149670.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.201993.1.S1_at	A	A1TS	POPTR_0002s11220	POPTR_0002s11220 (11)	scaffold_2:8283884-8284052(-) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT2G18880.1	vernalization5/VIN3-like 	LOC_Os02g05840.1	"VIL2 protein, putative, expressed"	Medtr5g075380.1	"Protein VERNALIZATION INSENSITIVE 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201994.1.S1_at	A	A1TS	POPTR_0002s11230	POPTR_0002s11230 (11)	scaffold_2:8299249-8299485(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT5G49660.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os12g43660.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.201996.1.S1_s_at	A	A1TS	POPTR_0002s11270	POPTR_0002s11270 (11)	scaffold_2:8344082-8344581(+) (11)	NA	P92934	Amino acid permease 6	AT5G49630.1	amino acid permease 6 	LOC_Os07g04180.1	"amino acid transporter, putative, expressed"	Medtr3g127950.1	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201998.1.S1_at	A	A1TS	POPTR_0002s11340	POPTR_0002s11340 (11)	scaffold_2:8383752-8384146(-) (11)	NA	NA	NA	AT4G37820.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1); Has 433572 Blast hits to 177005 proteins in 4263 species: Archae - 2016; Bacteria - 67591; Metazoa - 157995; Fungi - 49745; Plants - 22011; Viruses - 2192; Other Eukaryotes - 132022 (source: NCBI BLink). 	LOC_Os03g51640.1	expressed protein	Medtr5g005610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201999.1.S1_at	A	A1TS	POPTR_0002s11350	POPTR_0002s11350 (11)	scaffold_2:8393159-8393393(-) (11)	NA	Q9T068	EPIDERMAL PATTERNING FACTOR-like protein 2	AT4G37810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g46930.1	hypothetical protein	Medtr8g102160.1	"4D11_25, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202.1.S1_at	A	A1TS	POPTR_0010s16720	POPTR_0010s16720 (9)	scaffold_10:15585852-15586236(-) (9)	NA	NA	NA	AT1G26580.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g31230.2	"MYB family transcription factor, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202000.1.S1_at	A	A1TS	POPTR_0002s11360	POPTR_0002s11360 (11)	scaffold_2:8395925-8398127(-) (11)	NA	NA	NA	AT1G10040.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g51670.1	"serine esterase family protein, putative, expressed"	Medtr3g128090.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202001.1.S1_at	A	A1TS	POPTR_0002s11420	POPTR_0002s11420 (11)	scaffold_2:8457769-8458258(+) (11)	NA	Q9M439	"Branched-chain-amino-acid aminotransferase 2, chloroplastic"	AT1G10070.2	branched-chain amino acid transaminase 2 	LOC_Os10g40200.1	"aminotransferase domain containing protein, putative, expressed"	Medtr5g015110.1	Branched-chain amino acid aminotransferase II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202002.1.S1_at	A	A1TS	POPTR_0002s11440	POPTR_0002s11440 (11)	scaffold_2:8479331-8479988(+) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G65790.1	myb domain protein 68 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202003.1.S1_at	A	A1TS	POPTR_0002s11460	POPTR_0002s11460 (11)	scaffold_2:8500147-8500607(-) (11)	NA	Q00257	1-aminocyclopropane-1-carboxylate synthase CMA101	AT4G37770.1	1-amino-cyclopropane-1-carboxylate synthase 8 	LOC_Os03g51740.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g015160.1	Aminotransferases class-I pyridoxal-phosphate-binding site; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.202004.1.S1_at	A	A1TS	POPTR_0002s11470	POPTR_0002s11470 (11)	scaffold_2:8519628-8521278(-) (11)	NA	Q9M2Y6	Uncharacterized protein At3g49720	AT3G49720.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g05070.1	expressed protein	Medtr2g010600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202005.1.S1_at	A	A1TS	POPTR_0002s11480	POPTR_0002s11480 (11)	scaffold_2:8527844-8528210(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202007.1.S1_at	A	A1TS	POPTR_0002s11500	POPTR_0002s11500 (11)	scaffold_2:8550480-8551242(-) (11)	NA	Q9JM15	Sodium-coupled neutral amino acid transporter 1	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202008.1.S1_at	A	A1TS	POPTR_0002s11530	POPTR_0002s11530 (11)	scaffold_2:8587361-8589557(-) (11)	NA	NA	NA	AT4G07990.2	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g51830.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.202010.1.S1_at	A	A1TS	POPTR_0002s11580	POPTR_0002s11580 (11)	scaffold_2:8645226-8645857(-) (11)	NA	Q9VVE5	RNA-binding protein Musashi homolog Rbp6	AT1G58470.1	RNA-binding protein 1 	LOC_Os07g39560.3	"RNA recognition motif containing protein, putative, expressed"	Medtr2g030270.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202012.1.S1_x_at	A	A1MS	POPTR_0002s11650	POPTR_0002s11650 (9)	scaffold_2:8674596-8675415(-) (9)	NA	NA	NA	AT1G59540.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g35090.1	"kinesin motor domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202013.1.S1_at	A	A1TS	POPTR_0002s11660	POPTR_0002s11660 (11)	scaffold_2:8679335-8679748(-) (11)	NA	NA	NA	AT1G59530.1	basic leucine-zipper 4 	LOC_Os08g26880.1	"bZIP transcription factor domain containing protein, expressed"	Medtr8g101980.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.202015.1.S1_at	A	A1TS	POPTR_0002s11700	POPTR_0002s11700 (9)	scaffold_2:8694604-8695255(-) (11)	NA	Q9SY57	Protein PHLOEM PROTEIN 2-LIKE A10	AT1G10150.1	Carbohydrate-binding protein 	LOC_Os03g56000.1	"PHLOEM 2-LIKE A10, putative, expressed"	Medtr5g015270.1	"Protein PHLOEM PROTEIN 2-LIKE A10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202016.1.S1_at	A	A1TS	POPTR_0002s11710	POPTR_0002s11710 (11)	scaffold_2:8702776-8703350(-) (11)	NA	Q9FHN9	U-box domain-containing protein 31	AT5G65920.1	ARM repeat superfamily protein 	LOC_Os03g13010.1	"U-box domain containing protein, expressed"	Medtr5g015370.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.202017.1.S1_at	A	A1TS	POPTR_0002s11730	POPTR_0002s11730 (11)	scaffold_2:8712149-8712537(-) (11)	NA	Q9FHN9	U-box domain-containing protein 31	AT5G65920.1	ARM repeat superfamily protein 	LOC_Os03g13010.1	"U-box domain containing protein, expressed"	Medtr5g015370.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.202019.1.S1_at	A	A1TS	POPTR_0002s11770	POPTR_0002s11770 (11)	scaffold_2:8723324-8723673(-) (11)	NA	Q9STY6	40S ribosomal protein S20-2	AT3G47370.3	Ribosomal protein S10p/S20e family protein 	LOC_Os06g04290.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr2g100760.1	"Ribosomal protein S10, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.202020.1.S1_at	A	A1TS	POPTR_0002s11800	POPTR_0002s11800 (11)	scaffold_2:8736504-8738000(-) (11)	NA	Q43207	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g41390.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr1g022950.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.202021.1.S1_at	A	A1TS	POPTR_0002s11820	POPTR_0002s11820 (10)	scaffold_2:8749338-8752474(-) (11)	NA	Q9SY55	"Calcium-transporting ATPase 3, endoplasmic reticulum-type"	AT1G10130.1	endoplasmic reticulum-type calcium-transporting ATPase 3 	LOC_Os03g52090.1	"calcium-transporting ATPase 3, endoplasmic reticulum-type, putative"	Medtr8g029470.1	Haloacid dehalogenase-like hydrolase 	GO:0044281|small molecule metabolic process||GO:0006812|cation transport||GO:0006754|ATP biosynthetic process	"GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.202022.1.S1_at	A	A1TS	POPTR_0002s11820	POPTR_0002s11820 (10)	scaffold_2:8757151-8759796(-) (11)	NA	Q9SY55	"Calcium-transporting ATPase 3, endoplasmic reticulum-type"	AT1G10130.1	endoplasmic reticulum-type calcium-transporting ATPase 3 	LOC_Os03g52090.1	"calcium-transporting ATPase 3, endoplasmic reticulum-type, putative"	Medtr8g029470.1	Haloacid dehalogenase-like hydrolase 	GO:0044281|small molecule metabolic process||GO:0006812|cation transport||GO:0006754|ATP biosynthetic process	"GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.202023.1.S1_at	A	A1TS	POPTR_0002s11830	POPTR_0002s11830 (11)	scaffold_2:8779434-8780539(+) (11)	NA	Q8R2N2	Cirhin	AT4G07410.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g52470.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g015510.1	"Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202025.1.S1_at	A	A1TS	POPTR_0002s11870	POPTR_0002s11870 (11)	scaffold_2:8808687-8809088(+) (11)	NA	Q84WW1	F-box protein At3g12350	AT3G12350.1	F-box family protein 	LOC_Os12g32630.1	"OsFBX448 - F-box domain containing protein, expressed"	Medtr1g023010.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202027.1.S1_at	A	A1TS	POPTR_0002s11940	POPTR_0002s11940 (11)	scaffold_2:8842874-8843441(-) (11)	NA	NA	NA	AT5G58610.1	"PHD finger transcription factor, putative "	LOC_Os07g49290.1	"PHD finger family protein, putative, expressed"	Medtr5g024380.1	"GCN5-related N-acetyltransferase; Zinc finger, FYVE/PHD-type "	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.202028.1.S1_at	A	A1MS	POPTR_0002s11960	POPTR_0002s11960 (10)	scaffold_2:8861765-8861805(+) (10)	NA	O22193	U-box domain-containing protein 4	AT3G01400.1	ARM repeat superfamily protein 	LOC_Os03g32100.1	"spotted leaf 11, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202029.1.S1_at	A	A1TS	POPTR_0002s11980	POPTR_0002s11980 (11)	scaffold_2:8889516-8890936(-) (11)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os03g42070.1	"cyclin, putative, expressed"	Medtr5g015730.1	"Cyclin, N-terminal; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20203.1.S1_at	A	A1TS	POPTR_0001s36250	POPTR_0001s36250 (9)	scaffold_1:34788395-34788665(+) (9)	NA	NA	NA	AT3G01720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). 	LOC_Os01g67750.1	expressed protein	AC145328_11.1	hypothetical protein AC145328.23 57989-50900 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202030.1.S1_at	A	A1TS	POPTR_0002s12000	POPTR_0002s12000 (11)	scaffold_2:8916930-8917822(-) (11)	NA	Q84WK0	Transcription factor bHLH85	AT4G33880.1	ROOT HAIR DEFECTIVE 6-LIKE 2 	LOC_Os03g42100.1	helix-loop-helix DNA-binding domain containing protein	Medtr1g023470.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.202031.1.S1_at	A	A1TS	POPTR_0002s12030	POPTR_0002s12030 (11)	scaffold_2:8943865-8946356(-) (11)	NA	NA	NA	AT1G49890.1	Family of unknown function (DUF566)  	LOC_Os03g10820.1	expressed protein	Medtr1g023430.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202032.1.S1_at	A	A1TS	POPTR_0002s12070	POPTR_0002s12070 (11)	scaffold_2:8972276-8972462(-) (11)	NA	NA	NA	AT5G43130.1	TBP-associated factor 4 	LOC_Os02g43750.1	"transcription initiation factor, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006352|transcription initiation||GO:0006461|protein complex assembly	GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
PtpAffx.202033.1.S1_at	A	A1TS	POPTR_0002s12080	POPTR_0002s12080 (11)	scaffold_2:8978762-8979454(-) (11)	NA	NA	NA	AT5G43130.2	TBP-associated factor 4 	LOC_Os03g32590.2	"transcription initiation factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202034.1.S1_at	A	A1TS	POPTR_0002s12090	POPTR_0002s12090 (10)	scaffold_2:8983364-8984552(+) (11)	NA	Q08466	Casein kinase II subunit alpha-2	AT5G67380.2	casein kinase alpha 1 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr8g099310.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202035.1.S1_at	A	A1TS	POPTR_0002s12110	POPTR_0002s12110 (11)	scaffold_2:8991857-8993477(+) (11)	NA	Q9STX1	Acyl-CoA-binding domain-containing protein 3	AT4G24230.6	acyl-CoA-binding domain 3 	LOC_Os03g14000.2	"acyl CoA binding protein, putative, expressed"	NA	NA	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.202036.1.S1_at	A	A1TS	POPTR_0002s12120	POPTR_0002s12120 (11)	scaffold_2:8999501-9000740(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202037.1.S1_at	A	A1TS	POPTR_1058s00210	POPTR_1058s00210 (11)	scaffold_1058:4911-6013(-) (11)//scaffold_2:9015150-9015424(-) (9)	POPTR_0002s12160 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202038.1.S1_at	A	A1TS	POPTR_0002s12180	POPTR_0002s12180 (10)	scaffold_2:9023191-9023726(-) (11)	NA	NA	NA	AT5G43120.1	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein 	LOC_Os05g34820.1	expressed protein	AC232874_13.1	Tetratricopeptide-like helical AC232874.1 44658-42406 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202039.1.S1_at	A	A1TS	POPTR_0002s12190	POPTR_0002s12190 (11)	scaffold_2:9028578-9032062(-) (11)	NA	Q9LVC3	Pumilio homolog 12	AT5G56510.1	pumilio 12 	LOC_Os12g31000.1	"pumilio-family RNA binding repeat domain containing protein, expressed"	AC235748_25.1	Pumilio/Puf RNA-binding AC235748.1 92544-87886 E EGN_Mt090430 200	NA	GO:0003723|RNA binding	NA
PtpAffx.202040.1.S1_at	A	A1TS	POPTR_0002s12200	POPTR_0002s12200 (11)	scaffold_2:9044379-9045496(-) (11)	NA	Q9C6B2	Metal transporter Nramp2	AT1G47240.1	NRAMP metal ion transporter 2 	LOC_Os12g39180.1	"natural resistance-associated macrophage protein, putative, expressed"	AC232874_25.1	Natural resistance-associated macrophage protein AC232874.1 75295-80160 E EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.202041.1.S1_at	A	A1TS	POPTR_0002s12210	POPTR_0002s12210 (10)	scaffold_2:9049756-9050274(-) (10)	NA	Q9FG65	Cytochrome P450 81D1	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.202042.1.S1_s_at	A	A2TS	POPTR_0002s12220	POPTR_0002s12220 (11)//POPTR_0002s12300 (11)	scaffold_2:9055882-9056071(-) (11)//scaffold_2:9140124-9140313(-) (11)	NA	Q9FG65	Cytochrome P450 81D1	AT4G37340.1	"cytochrome P450, family 81, subfamily D, polypeptide 3 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.202044.1.S1_at	A	A1TS	POPTR_0002s12310	POPTR_0002s12310 (11)	scaffold_2:9148666-9149795(+) (11)	NA	Q9FMH5	Putative cyclin-A3-1	AT1G47230.1	CYCLIN A3;4 	LOC_Os12g39210.1	"cyclin, putative, expressed"	Medtr1g023700.1	Cyclin-like; ; 	NA	NA	GO:0005634|nucleus
PtpAffx.202045.1.S1_at	A	A1TS	POPTR_0002s12390	POPTR_0002s12390 (11)	scaffold_2:9190215-9190434(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202046.1.S1_at	A	A1TS	POPTR_0002s12400	POPTR_0002s12400 (11)	scaffold_2:9192945-9194624(+) (11)	NA	Q54RM0	NuA4 complex subunit EAF3 homolog	AT4G37280.1	MRG family protein 	LOC_Os11g34300.2	"chromatin modification-related protein EAF3, putative, expressed"	NA	NA	NA	NA	GO:0005634|nucleus
PtpAffx.202047.1.S1_at	A	A1TS	POPTR_0002s12470	POPTR_0002s12470 (11)	scaffold_2:9251993-9252988(-) (11)	NA	NA	NA	AT4G34150.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os06g43190.1	"retrotransposon protein, putative, unclassified, expressed"	AC151525_7.1	C2 AC151525.18 31176-29302 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202048.1.S1_at	A	A1TS	POPTR_0002s12480	POPTR_0002s12480 (10)	scaffold_2:9260302-9260893(+) (10)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202049.1.S1_at	A	A1TS	POPTR_0002s12530	POPTR_0002s12530 (10)	scaffold_2:9306524-9306927(-) (11)	NA	NA	NA	AT4G06534.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g40110.1	expressed protein	Medtr3g147400.1	SPla/RYanodine receptor SPRY 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202050.1.S1_at	A	A1TS	POPTR_0002s12540	POPTR_0002s12540 (9)	scaffold_2:9318127-9318603(+) (11)	NA	NA	NA	AT5G52010.1	C2H2-like zinc finger protein 	LOC_Os06g07020.1	"ZOS6-01 - C2H2 zinc finger protein, expressed"	Medtr1g019990.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202051.1.S1_at	A	A1TS	POPTR_0002s12600	POPTR_0002s12600 (11)	scaffold_2:9393974-9396143(+) (11)	NA	Q9FUA4	Transcription factor SPATULA	AT4G36930.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os06g06900.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g024210.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202052.1.S1_at	A	A1TS	POPTR_0002s12650	POPTR_0002s12650 (10)	scaffold_2:9437889-9440080(+) (10)	NA	NA	NA	AT3G49180.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g22534.4	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g039650.1	"WD repeat-containing protein 18, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202053.1.S1_at	A	A1TS	POPTR_0002s12660	POPTR_0002s12660 (11)	scaffold_2:9447808-9448364(+) (11)	NA	Q9FHA7	Transcription factor HEC1	AT5G67060.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g36740.1	"bHelix-loop-helix transcription factor, putative"	Medtr3g147680.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.202054.1.S1_at	A	A1TS	POPTR_0002s12670	POPTR_0002s12670 (11)	scaffold_2:9451629-9452820(+) (11)	NA	NA	NA	AT1G56630.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr1g024250.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202054.1.S1_x_at	A	A1TS	POPTR_0002s12670	POPTR_0002s12670 (11)	scaffold_2:9451598-9452820(+) (11)	NA	NA	NA	AT1G56630.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr1g024250.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202055.1.S1_at	A	A1MS	POPTR_0002s12700	POPTR_0002s12700 (10)	scaffold_2:9467242-9468561(+) (10)	NA	NA	NA	AT5G42920.2	"THO complex,  subunit 5 "	LOC_Os02g52820.1	"cold-induced protein, putative, expressed"	Medtr3g147710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202056.1.S1_at	A	A1TS	POPTR_0002s12710	POPTR_0002s12710 (11)	scaffold_2:9469927-9472816(-) (11)	NA	Q9M7Q4	ABSCISIC ACID-INSENSITIVE 5-like protein 5	AT1G45249.1	abscisic acid responsive elements-binding factor 2 	LOC_Os09g28310.1	"bZIP transcription factor, putative, expressed"	Medtr3g147720.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.202056.1.S1_x_at	A	A1TS	POPTR_0002s12710	POPTR_0002s12710 (11)	scaffold_2:9469927-9472816(-) (11)	NA	Q9M7Q4	ABSCISIC ACID-INSENSITIVE 5-like protein 5	AT1G45249.1	abscisic acid responsive elements-binding factor 2 	LOC_Os09g28310.1	"bZIP transcription factor, putative, expressed"	Medtr3g147720.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.202057.1.S1_at	A	A1TS	POPTR_0002s12720	POPTR_0002s12720 (11)	scaffold_2:9477184-9477696(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202059.1.S1_at	A	A1TS	POPTR_0002s12770	POPTR_0002s12770 (11)	scaffold_2:9516791-9518407(+) (11)	NA	Q9LJK2	Abscisic acid 8'-hydroxylase 4	AT3G19270.1	"cytochrome P450, family 707, subfamily A, polypeptide 4 "	LOC_Os09g28390.1	"cytochrome P450, putative, expressed"	Medtr1g024340.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.202059.1.S1_x_at	A	A1TS	POPTR_0002s12770	POPTR_0002s12770 (11)	scaffold_2:9516796-9518373(+) (11)	NA	Q9LJK2	Abscisic acid 8'-hydroxylase 4	AT3G19270.1	"cytochrome P450, family 707, subfamily A, polypeptide 4 "	LOC_Os09g28390.1	"cytochrome P450, putative, expressed"	Medtr1g024340.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.202060.1.S1_at	A	A1TS	POPTR_0002s12800	POPTR_0002s12800 (11)	scaffold_2:9537582-9539517(+) (11)	NA	P40781	Protein CYPRO4	AT4G33400.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g08190.1	"CYPRO4, putative, expressed"	Medtr3g147800.1	AMP-dependent synthetase and ligase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202062.1.S1_at	A	A1TS	POPTR_0002s12830	POPTR_0002s12830 (11)	scaffold_2:9550400-9553013(-) (11)	NA	NA	NA	AT4G33350.1	Tic22-like family protein 	LOC_Os06g11020.1	"tic22-like family domain containing protein, expressed"	Medtr3g147870.1	Tic22-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202063.1.S1_at	A	A1TS	POPTR_0002s12860	POPTR_0002s12860 (11)	scaffold_2:9565558-9565646(-) (11)	NA	NA	NA	AT5G42750.1	BRI1 kinase inhibitor 1 	LOC_Os09g28550.1	hypothetical protein	Medtr1g024750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202063.1.S1_x_at	A	A1TS	POPTR_0002s12860	POPTR_0002s12860 (11)	scaffold_2:9565558-9565974(-) (11)	NA	NA	NA	AT5G42750.1	BRI1 kinase inhibitor 1 	LOC_Os09g28550.1	hypothetical protein	Medtr1g024750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202064.1.S1_at	A	A1TS	POPTR_0002s12870	POPTR_0002s12870 (11)	scaffold_2:9571477-9571537(-) (11)	NA	Q9FX08	Probable protein phosphatase 2C 12	AT1G47380.1	Protein phosphatase 2C family protein 	LOC_Os02g35910.1	"protein phosphotase protein, putative, expressed"	Medtr3g147960.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202064.1.S1_s_at	A	A1TS	POPTR_0002s12870	POPTR_0002s12870 (11)	scaffold_2:9571277-9571799(-) (11)	NA	Q9FX08	Probable protein phosphatase 2C 12	AT1G47380.1	Protein phosphatase 2C family protein 	LOC_Os02g35910.1	"protein phosphotase protein, putative, expressed"	Medtr3g147960.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202065.1.S1_at	A	A1TS	POPTR_0002s12900	POPTR_0002s12900 (10)	scaffold_2:9594090-9595126(-) (11)	NA	P73212	Putative dihydroflavonol-4-reductase	AT4G33360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g08624.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr3g147990.1	"Putative dihydroflavonol-4-reductase, "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.202066.1.S1_at	A	A1TS	POPTR_0002s12950	POPTR_0002s12950 (11)	scaffold_2:9621605-9622497(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.202067.1.S1_at	A	A1TS	POPTR_0002s12970	POPTR_0002s12970 (10)	scaffold_2:9630926-9631409(-) (10)	NA	Q2TBM9	Protein SERAC1	AT4G34310.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g08700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202068.1.S1_at	A	A1TS	POPTR_0002s12980	POPTR_0002s12980 (11)	scaffold_2:9643761-9644690(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.202069.1.S1_at	A	A1TS	POPTR_0002s12990	POPTR_0002s12990 (11)	scaffold_2:9648848-9649468(+) (11)	NA	NA	NA	AT5G42690.2	"Protein of unknown function, DUF547 "	LOC_Os09g28850.1	expressed protein	Medtr1g025040.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20207.1.A1_at	A	A1TS	POPTR_0006s00510	POPTR_0006s00510 (11)	scaffold_6:257738-258152(-) (11)	NA	Q9ZVT9	C2 and GRAM domain-containing protein At1g03375	AT1G03370.1	C2 calcium/lipid-binding and GRAM domain containing protein 	LOC_Os06g19400.1	"GRAM and C2 domains containing protein, putative, expressed"	Medtr2g032960.1	C2; GRAM; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202070.1.S1_at	A	A1TS	POPTR_0002s13000	POPTR_0002s13000 (11)	scaffold_2:9660147-9660468(+) (11)	NA	NA	NA	AT2G26530.1	Protein of unknown function (DUF1645) 	LOC_Os02g52380.1	"DUF1645 domain containing protein, putative, expressed"	Medtr4g129240.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202071.1.S1_at	A	A1TS	POPTR_0002s13010	POPTR_0002s13010 (11)	scaffold_2:9662273-9664412(-) (11)	NA	P34422	Dipeptidyl peptidase family member 6	AT5G36210.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g11180.1	"OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr3g068350.1	"Peptidase S9, prolyl oligopeptidase active site region "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.202074.1.S1_at	A	A1TS	POPTR_0002s13050	POPTR_0002s13050 (11)	scaffold_2:9707681-9709407(-) (11)	NA	Q54R82	Mitogen-activated protein kinase kinase kinase A	AT5G66850.1	mitogen-activated protein kinase kinase kinase 5 	LOC_Os03g55560.2	"STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g148390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202075.1.S1_at	A	A1TS	POPTR_0002s13060	POPTR_0002s13060 (11)	scaffold_2:9716776-9718561(+) (11)	NA	Q9SX99	"Protein OSB1, mitochondrial"	AT1G47720.1	Primosome PriB/single-strand DNA-binding 	LOC_Os03g43420.1	"single-stranded DNA-binding protein, putative, expressed"	Medtr1g025070.1	Single-strand binding protein/Primosomal replication protein n 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202076.1.S1_at	A	A1TS	POPTR_0002s13090	POPTR_0002s13090 (10)	scaffold_2:9749158-9749584(+) (10)	NA	Q8VYE4	Probable peptide/nitrate transporter At1g27040	AT1G27040.1	Major facilitator superfamily protein 	LOC_Os01g54515.1	"peptide transporter PTR2, putative, expressed"	Medtr3g148710.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.202077.1.S1_at	A	A1TS	POPTR_0002s13110	POPTR_0002s13110 (11)	scaffold_2:9762160-9762872(-) (11)	NA	Q93ZB2	"Ent-kaurene oxidase, chloroplastic"	AT5G25900.1	GA requiring 3 	LOC_Os06g37364.2	"cytochrome P450, putative, expressed"	AC233655_8.1	Cytochrome P450 AC233655.2 70216-66894 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.202078.1.S1_at	A	A1TS	POPTR_0002s13130	POPTR_0002s13130 (11)	scaffold_2:9775463-9776450(+) (11)	NA	Q8RYD1	B3 domain-containing protein REM16	AT4G33280.1	AP2/B3-like transcriptional factor family protein 	LOC_Os11g09160.2	"B3 DNA binding domain containing protein, expressed"	Medtr1g025470.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.202080.1.S1_at	A	A1TS	POPTR_0002s13140	POPTR_0002s13140 (9)	scaffold_2:9784974-9785460(+) (11)	NA	Q8RYD1	B3 domain-containing protein REM16	AT4G33280.1	AP2/B3-like transcriptional factor family protein 	LOC_Os03g42420.1	"B3 DNA binding domain containing protein, expressed"	Medtr1g025420.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.202081.1.S1_at	A	A1TS	POPTR_0002s13170	POPTR_0002s13170 (11)	scaffold_2:9801039-9801486(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT5G42630.1	Homeodomain-like superfamily protein 	LOC_Os03g55760.1	"MYB family transcription factor, putative, expressed"	Medtr1g025490.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202082.1.S1_at	A	A1TS	POPTR_0002s13180	POPTR_0002s13180 (11)	scaffold_2:9819864-9820465(+) (11)	NA	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT3G13690.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	Medtr1g025550.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202083.1.S1_at	A	A1TS	POPTR_0002s13190	POPTR_0002s13190 (11)	scaffold_2:9823588-9824125(-) (11)	NA	Q61FW2	F-box/WD repeat-containing protein sel-10	AT2G26490.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52870.1	"WD-40 repeat family protein, putative, expressed"	Medtr1g025560.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202084.1.S1_at	A	A1TS	POPTR_0002s13210	POPTR_0002s13210 (11)	scaffold_2:9840495-9840879(+) (11)	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202085.1.S1_at	A	A1TS	POPTR_0002s13220	POPTR_0002s13220 (11)	scaffold_2:9845481-9846014(-) (11)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT5G42650.1	allene oxide synthase 	LOC_Os03g55800.1	"cytochrome P450, putative, expressed"	Medtr4g093070.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202086.1.S1_at	A	A1TS	POPTR_0002s13230	POPTR_0002s13230 (11)	scaffold_2:9857318-9858775(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202087.1.S1_at	A	A1TS	POPTR_0002s13270	POPTR_0002s13270 (11)	scaffold_2:9871990-9872714(-) (11)	NA	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr3g087520.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.202088.1.S1_at	A	A1MS	POPTR_0002s13280	POPTR_0002s13280 (9)	scaffold_2:9880537-9880650(-) (9)	NA	Q9SX85	Exocyst complex component SEC3A	AT1G47550.1	exocyst complex component sec3A 	LOC_Os03g42750.1	"roothairless 1, putative, expressed"	Medtr1g025760.1	"Strong similarity to F16N3.18 from, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202089.1.S1_s_at	A	A2TS	POPTR_0002s13280	POPTR_0014s03860 (11)//POPTR_0002s13280 (11)	scaffold_14:3088895-3089141(-) (11)//scaffold_2:9882972-9883222(-) (11)	NA	Q9SX85	Exocyst complex component SEC3A	AT1G47550.1	exocyst complex component sec3A 	LOC_Os03g42750.1	"roothairless 1, putative, expressed"	Medtr1g025760.1	"Strong similarity to F16N3.18 from, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20209.1.S1_s_at	A	A1TS	POPTR_0005s22810	POPTR_0005s22810 (11)	scaffold_5:21698539-21698924(-) (11)	NA	Q9H6S0	Probable ATP-dependent RNA helicase YTHDC2	AT2G30800.1	helicase in vascular tissue and tapetum 	LOC_Os01g56190.1	"HVT1, putative, expressed"	Medtr5g097550.1	"Single-stranded nucleic acid binding R3H; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.202090.1.S1_at	A	A1TS	POPTR_0002s13290	POPTR_0002s13290 (11)	scaffold_2:9883830-9884372(-) (11)	NA	NA	NA	AT5G42655.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g52920.1	expressed protein	Medtr4g155880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202091.1.S1_at	A	A1TS	POPTR_0002s13320	POPTR_0002s13320 (11)	scaffold_2:9898122-9898597(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202092.1.S1_at	A	A1TS	POPTR_0002s13340	POPTR_0002s13340 (11)	scaffold_2:9907940-9908464(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G47530.1	MATE efflux family protein 	LOC_Os08g43654.1	"MATE efflux family protein, putative, expressed"	Medtr1g025870.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.202093.1.S1_s_at	A	A1TS	POPTR_0002s13360	POPTR_0002s13360 (11)	scaffold_2:9914873-9915269(-) (11)	POPTR_0015s10590 (8)	Q9FIH9	Calcium-binding protein CML37	AT5G42380.1	calmodulin like 37 	LOC_Os01g72550.1	OsCML19 - Calmodulin-related calcium sensor protein	Medtr3g117520.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202094.1.S1_at	A	A1TS	POPTR_0002s13380	POPTR_0002s13380 (11)	scaffold_2:9927435-9929049(+) (11)	NA	P0C7Q8	Protein DA1	AT1G19270.1	DA1 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.202095.1.S1_at	A	A1TS	POPTR_0002s13390	POPTR_0002s13390 (11)	scaffold_2:9929590-9930192(-) (11)	NA	Q9XEC8	Cysteine-rich receptor-like protein kinase 38	AT4G04510.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 38 	LOC_Os02g45750.1	"protein kinase domain containing protein, expressed"	Medtr5g093120.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202096.1.S1_at	A	A1TS	POPTR_0002s13410	POPTR_0002s13410 (11)	scaffold_2:9947844-9947916(-) (11)	NA	Q09463	RING finger protein 5	AT1G19310.1	RING/U-box superfamily protein 	LOC_Os12g43930.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202097.1.S1_a_at	A	A1TS	POPTR_0002s13440	POPTR_0002s13440 (11)	scaffold_2:9958154-9958193(-) (11)//scaffold_2:9958197-9958236(-) (11)//scaffold_2:9958240-9958279(-) (11)	NA	Q29AK2	Leishmanolysin-like peptidase	AT5G42620.2	metalloendopeptidases;zinc ion binding 	LOC_Os03g52150.1	"metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed"	NA	NA	GO:0006508|proteolysis||GO:0007155|cell adhesion||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016020|membrane
PtpAffx.202097.1.S1_at	A	A1TS	POPTR_0002s13440	POPTR_0002s13440 (11)	scaffold_2:9958111-9959336(-) (11)	NA	Q29AK2	Leishmanolysin-like peptidase	AT5G42620.2	metalloendopeptidases;zinc ion binding 	LOC_Os03g52150.1	"metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed"	NA	NA	GO:0006508|proteolysis||GO:0007155|cell adhesion||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016020|membrane
PtpAffx.202098.1.S1_at	A	A1MS	POPTR_0002s13470	POPTR_0002s13470 (11)	scaffold_2:10004541-10004905(+) (11)	NA	Q9ZU75	Probable NEDD8-conjugating enzyme Ubc12-like	AT2G18600.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os10g11260.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202099.1.S1_at	A	A1TS	POPTR_0002s13500	POPTR_0002s13500 (10)	scaffold_2:10024171-10024766(+) (11)	NA	NA	NA	AT2G39210.1	Major facilitator superfamily protein 	LOC_Os07g09010.1	"nodulin, putative, expressed"	AC233660_5.1	Nodulin-like; Major facilitator superfamily MFS_1 AC233660.2 23536-25326 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202100.1.S1_at	A	A1TS	POPTR_0002s13510	POPTR_0002s13510 (11)	scaffold_2:10026357-10027111(-) (11)	NA	Q9FZF1	Peroxisomal membrane protein 11A	AT1G47750.1	peroxin 11A 	LOC_Os03g19010.1	"peroxisomal biogenesis factor 11, putative, expressed"	NA	NA	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
PtpAffx.202101.1.S1_at	A	A1TS	POPTR_0002s13580	POPTR_0002s13580 (11)	scaffold_2:10073967-10074678(+) (11)	NA	O64792	Phosphatidylinositol N-acetylglucosaminyltransferase subunit P	AT2G39445.1	"Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit "	LOC_Os03g43900.1	"phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202104.1.S1_s_at	A	A1TS	POPTR_0002s13720	POPTR_0002s13720 (11)	scaffold_2:10189743-10189922(+) (11)	NA	P46602	Homeobox-leucine zipper protein HAT3	AT3G60390.1	homeobox-leucine zipper protein 3 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.202105.1.S1_at	A	A1TS	POPTR_0002s13740	POPTR_0002s13740 (11)	scaffold_2:10197145-10197923(+) (11)	NA	NA	NA	AT3G60380.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink). 	NA	NA	Medtr8g105280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202105.1.S1_s_at	A	A1TS	POPTR_0002s13740	POPTR_0002s13740 (11)	scaffold_2:10197159-10197572(+) (11)	NA	NA	NA	AT3G60380.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink). 	NA	NA	Medtr8g105280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202106.1.S1_at	A	A1TS	POPTR_0002s13770	POPTR_0002s13770 (9)	scaffold_2:10205518-10205768(+) (11)	NA	O14036	Probable small nuclear ribonucleoprotein Sm D2	AT3G62840.2	Small nuclear ribonucleoprotein family protein 	LOC_Os05g24970.2	"LSM domain containing protein, expressed"	Medtr4g156540.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202107.1.S1_at	A	A1TS	POPTR_0002s13790	POPTR_0002s13790 (11)	scaffold_2:10225233-10226504(+) (11)	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202108.1.S1_at	A	A1TS	POPTR_0002s13820	POPTR_0002s13820 (11)	scaffold_2:10236753-10237643(-) (11)	NA	NA	NA	AT2G44850.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881); Has 106 Blast hits to 106 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os02g43810.1	expressed protein	Medtr7g006050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202109.1.S1_at	A	A1TS	POPTR_0002s13870	POPTR_0002s13870 (11)	scaffold_2:10285331-10286691(+) (11)	NA	Q3KR56	GRAM domain-containing protein 1A	AT1G02120.1	GRAM domain family protein 	LOC_Os09g34130.1	"GRAM domain containing protein, expressed"	Medtr4g128530.1	C2; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202110.1.S1_at	A	A1TS	POPTR_0002s13880	POPTR_0002s13880 (11)	scaffold_2:10290935-10291514(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202111.1.S1_at	A	A1TS	POPTR_0002s13890	POPTR_0002s13890 (11)	scaffold_2:10297364-10297928(-) (11)	NA	Q948R1	"Phospholipase A(1) DAD1, chloroplastic"	AT2G44810.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os11g04940.1	"phospholipase, putative"	Medtr7g093240.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.202112.1.S1_s_at	A	A1TS	POPTR_0002s13910	POPTR_0002s13910 (11)	scaffold_2:10318190-10318951(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202113.1.S1_at	A	A1TS	POPTR_0002s13950	POPTR_0002s13950 (11)	scaffold_2:10343506-10344246(-) (11)	NA	NA	NA	AT2G44760.1	Domain of unknown function (DUF3598) 	LOC_Os04g46100.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202114.1.S1_at	A	A1TS	POPTR_0002s14020	POPTR_0002s14020 (11)	scaffold_2:10393806-10394116(+) (11)	NA	Q8LPS6	Pentatricopeptide repeat-containing protein At1g02150	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g46010.1	"PPR repeat domain containing protein, putative, expressed"	AC202489_31.1	Pentatricopeptide repeat AC202489.10 131297-133733 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202114.1.S1_s_at	A	A2TS	POPTR_0002s14020	POPTR_0002s14020 (11)//POPTR_0014s04920 (11)	scaffold_14:3810309-3810862(+) (11)//scaffold_2:10393583-10394136(+) (11)	NA	Q8LPS6	Pentatricopeptide repeat-containing protein At1g02150	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g46010.1	"PPR repeat domain containing protein, putative, expressed"	AC202489_31.1	Pentatricopeptide repeat AC202489.10 131297-133733 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202114.1.S1_x_at	A	A1TS	POPTR_0002s14020	POPTR_0002s14020 (11)	scaffold_2:10393619-10394116(+) (11)	NA	Q8LPS6	Pentatricopeptide repeat-containing protein At1g02150	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g46010.1	"PPR repeat domain containing protein, putative, expressed"	AC202489_31.1	Pentatricopeptide repeat AC202489.10 131297-133733 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202115.1.S1_at	A	A1TS	POPTR_0002s14030	POPTR_0002s14030 (11)	scaffold_2:10396912-10397433(+) (11)	NA	NA	NA	AT2G44730.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os10g41460.1	"transcription factor like protein, putative, expressed"	Medtr7g092760.1	MADF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202116.1.S1_at	A	A1TS	POPTR_0002s14040	POPTR_0002s14040 (11)	scaffold_2:10399156-10401156(-) (11)	NA	NA	NA	AT4G17070.1	peptidyl-prolyl cis-trans isomerases 	LOC_Os03g01090.1	"peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed"	Medtr5g013700.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.202117.1.S1_at	A	A1TS	POPTR_0002s14050	POPTR_0002s14050 (11)	scaffold_2:10408898-10408978(-) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202117.1.S1_x_at	A	A1TS	POPTR_0002s14050	POPTR_0002s14050 (11)	scaffold_2:10407765-10408978(-) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202118.1.S1_at	A	A1TS	POPTR_0002s14050	POPTR_0002s14050 (11)	scaffold_2:10410585-10410760(-) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202118.1.S1_x_at	A	A1TS	POPTR_0002s14050	POPTR_0002s14050 (10)	scaffold_2:10410497-10410760(-) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202119.1.S1_at	A	A1TS	POPTR_0002s14080	POPTR_0002s14080 (11)	scaffold_2:10430687-10430740(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.1	casein kinase II  beta chain 1 	LOC_Os10g41520.1	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
PtpAffx.202120.1.S1_at	A	A1TS	POPTR_0002s14090	POPTR_0002s14090 (11)	scaffold_2:10441503-10442188(+) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT4G17080.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os10g41534.3	"ICE-like protease p20 domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202120.1.S1_s_at	A	A2TS	POPTR_0002s14090	POPTR_0014s05120 (11)//POPTR_0002s14090 (11)	scaffold_14:3904024-3904710(+) (11)//scaffold_2:10441484-10442151(+) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT4G17080.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os10g41534.3	"ICE-like protease p20 domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202120.1.S1_x_at	A	A1TS	POPTR_0002s14090	POPTR_0002s14090 (11)	scaffold_2:10439584-10442188(+) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT4G17080.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os10g41534.3	"ICE-like protease p20 domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202121.1.S1_at	A	A1MS	POPTR_0002s14110	POPTR_0002s14110 (11)	scaffold_2:10458790-10459061(-) (11)	NA	Q76E23	Eukaryotic translation initiation factor 4G	AT3G60240.3	eukaryotic translation initiation factor 4G 	LOC_Os07g36940.2	"eukaryotic translation initiation factor 4G, putative, expressed"	Medtr8g008440.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.202121.1.S1_s_at	A	A1TS	POPTR_0002s14110	POPTR_0002s14110 (11)	scaffold_2:10458846-10458987(-) (11)	NA	Q76E23	Eukaryotic translation initiation factor 4G	AT3G60240.3	eukaryotic translation initiation factor 4G 	LOC_Os07g36940.2	"eukaryotic translation initiation factor 4G, putative, expressed"	Medtr8g008440.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.202122.1.S1_at	A	A1TS	POPTR_0002s14140	POPTR_0002s14140 (11)	scaffold_2:10491725-10491814(+) (11)	NA	Q7T037	E3 ubiquitin-protein ligase RNF12-B	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202123.1.S1_at	A	A1TS	POPTR_0002s14150	POPTR_0002s14150 (11)	scaffold_2:10495052-10495492(+) (11)	NA	Q9LY41	E3 ubiquitin-protein ligase ATL4	AT3G60220.1	TOXICOS EN LEVADURA 4 	LOC_Os02g46340.1	"RING-H2 finger protein ATL3J, putative, expressed"	Medtr8g008990.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202124.1.S1_at	A	A1TS	POPTR_0002s14170	POPTR_0002s14170 (11)	scaffold_2:10507732-10508791(+) (11)	NA	NA	NA	AT4G13970.1	zinc ion binding 	LOC_Os07g12520.1	"zinc ion binding protein, putative, expressed"	Medtr4g110340.1	"zinc ion binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202125.1.S1_at	A	A1TS	POPTR_0002s14180	POPTR_0002s14180 (9)	scaffold_2:10510920-10511739(+) (9)	NA	A2WW87	Transcription factor GAMYB	AT3G60460.1	myb-like HTH transcriptional regulator family protein 	LOC_Os04g46384.1	"MYB family transcription factor, putative"	Medtr8g006230.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202126.1.S1_x_at	A	A1TS	POPTR_0002s14200	POPTR_0002s14200 (11)	scaffold_2:10523494-10523896(+) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os02g43930.1	"chaperone protein dnaJ, putative, expressed"	Medtr8g006170.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.202127.1.S1_at	A	A1TS	POPTR_0002s14210	POPTR_0002s14210 (11)	scaffold_2:10529903-10530113(+) (11)	NA	Q8LBQ7	Ethylene-responsive transcription factor ERF034	AT2G44940.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43970.1	"AP2 domain containing protein, expressed"	Medtr7g040320.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.202128.1.S1_at	A	A2TS	POPTR_0002s14240	POPTR_0955s00200 (11)//POPTR_0002s14240 (11)	scaffold_2:10552919-10553359(-) (11)//scaffold_955:4349-4789(-) (11)	NA	P51075	Chalcone synthase	AT1G02050.1	Chalcone and stilbene synthase family protein 	LOC_Os10g34360.1	"stilbene synthase, putative, expressed"	Medtr4g108490.1	"Chalcone and stilbene synthases, C-terminal "	GO:0009058|biosynthetic process	GO:0008415|acyltransferase activity	NA
PtpAffx.202129.1.S1_at	A	A1TS	POPTR_0002s14260	POPTR_0002s14260 (11)	scaffold_2:10561966-10563349(+) (11)	NA	NA	NA	AT2G45010.1	PLAC8 family protein 	LOC_Os03g01210.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr7g041040.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202130.1.S1_at	A	A1TS	POPTR_0002s14270	POPTR_0002s14270 (11)	scaffold_2:10566521-10567035(+) (11)	NA	Q08062	"Malate dehydrogenase, cytoplasmic"	AT1G04410.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr1g042850.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.202131.1.S1_at	A	A1TS	POPTR_0002s14280	POPTR_0002s14280 (11)	scaffold_2:10567970-10568436(+) (11)	NA	O48905	"Malate dehydrogenase, cytoplasmic"	AT5G43330.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr1g042850.1	"Malate dehydrogenase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202132.1.S1_at	A	A1TS	POPTR_0002s14290	POPTR_0002s14290 (11)	scaffold_2:10571869-10572329(+) (11)	NA	Q08062	"Malate dehydrogenase, cytoplasmic"	AT1G04410.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr1g042850.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.202133.1.S1_at	A	A1MS	POPTR_0002s14340	POPTR_0002s14340 (11)	scaffold_2:10612507-10612954(+) (11)	NA	P29136	Metalloendoproteinase 1	AT2G45040.1	Matrixin family protein 	LOC_Os10g40830.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr8g005690.1	Peptidoglycan binding-like 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.202134.1.S1_at	A	A1TS	POPTR_0002s14360	POPTR_0002s14360 (10)	scaffold_2:10635856-10637497(+) (10)	NA	P28769	T-complex protein 1 subunit alpha	AT3G20050.1	T-complex protein 1 alpha subunit 	LOC_Os04g46620.1	"T-complex protein, putative, expressed"	Medtr4g136760.1	"T-complex protein 1, alpha subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.202135.1.S1_at	A	A1TS	POPTR_0002s14400	POPTR_0002s14400 (11)	scaffold_2:10676414-10677738(+) (11)	NA	A0JP85	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.1	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202136.1.S1_at	A	A1TS	POPTR_0002s14420	POPTR_0002s14420 (11)	scaffold_2:10687035-10687915(-) (11)	NA	Q8VYT5	F-box protein At5g07670	AT5G07670.1	RNI-like superfamily protein 	LOC_Os02g44104.1	"F-box family protein, putative, expressed"	Medtr2g026110.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202136.1.S1_x_at	A	A1TS	POPTR_0002s14420	POPTR_0002s14420 (11)	scaffold_2:10687002-10687928(-) (11)	NA	Q8VYT5	F-box protein At5g07670	AT5G07670.1	RNI-like superfamily protein 	LOC_Os02g44104.1	"F-box family protein, putative, expressed"	Medtr2g026110.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202137.1.S1_at	A	A1TS	POPTR_0002s14450	POPTR_0002s14450 (11)	scaffold_2:10726689-10727261(+) (11)	NA	Q42430	Zinc finger protein 1	AT1G02040.1	C2H2-type zinc finger family protein 	LOC_Os02g44120.1	"ZOS2-13 - C2H2 zinc finger protein, expressed"	Medtr4g036160.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.202138.1.S1_at	A	A1TS	POPTR_0002s14460	POPTR_0002s14460 (11)	scaffold_2:10739808-10740295(+) (11)	NA	Q42430	Zinc finger protein 1	AT3G60580.1	C2H2-like zinc finger protein 	LOC_Os10g40660.1	"ZOS10-07 - C2H2 zinc finger protein, expressed"	Medtr8g105670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.202141.1.S1_at	A	A1MS	POPTR_0002s14490	POPTR_0002s14490 (11)	scaffold_2:10774699-10775177(-) (11)	NA	Q0WVE9	Probable plastidic glucose transporter 1	AT1G05030.1	Major facilitator superfamily protein 	LOC_Os09g23110.1	"transporter family protein, putative, expressed"	Medtr3g110090.1	Sugar transporter; Major facilitator superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202142.1.S1_at	A	A1TS	POPTR_0002s14520	POPTR_0002s14520 (11)	scaffold_2:10798879-10799855(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g029400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202143.1.S1_at	A	A1TS	POPTR_0002s14570	POPTR_0002s14570 (11)	scaffold_2:10832995-10833709(+) (11)	NA	NA	NA	AT3G60670.1	PLATZ transcription factor family protein 	LOC_Os02g09070.1	"zinc-binding protein, putative, expressed"	Medtr8g122390.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.202144.1.S1_at	A	A1TS	POPTR_0002s14580	POPTR_0002s14580 (11)	scaffold_2:10851720-10852209(+) (11)	NA	NA	NA	AT3G60680.1	Plant protein of unknown function (DUF641) 	LOC_Os10g36400.1	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202145.1.S1_at	A	A1TS	POPTR_0002s14590	POPTR_0002s14590 (11)	scaffold_2:10857144-10857636(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202147.1.S1_at	A	A1TS	POPTR_0002s14660	POPTR_0002s14660 (11)	scaffold_2:10909952-10910535(+) (11)	NA	Q84R10	Probable pectinesterase/pectinesterase inhibitor 36	AT3G60730.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr7g138400.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.202148.1.S1_at	A	A1TS	POPTR_0002s14700	POPTR_0002s14700 (11)	scaffold_2:10922163-10923106(+) (11)	NA	O80813	Ycf20-like protein	AT3G56830.1	Protein of unknown function (DUF565) 	LOC_Os03g63554.1	"DUF565 domain containing protein, putative, expressed"	Medtr4g121120.1	Protein of unknown function DUF565 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202149.1.S1_at	A	A1TS	POPTR_0002s14710	POPTR_0002s14710 (11)	scaffold_2:10924677-10926193(-) (11)	NA	NA	NA	AT1G02020.1	nitroreductase family protein 	LOC_Os10g11340.1	"nitroreductase family protein, putative, expressed"	Medtr4g026200.1	"nitroreductase family protein, putative "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.202151.1.S1_s_at	A	A1TS	POPTR_0002s14760	POPTR_0002s14760 (11)	scaffold_2:10953830-10954685(-) (11)	NA	Q9STY6	40S ribosomal protein S20-2	AT3G47370.3	Ribosomal protein S10p/S20e family protein 	LOC_Os03g14530.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.202152.1.S1_at	A	A1TS	POPTR_0002s14770	POPTR_0002s14770 (11)	scaffold_2:10957098-10957717(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202154.1.S1_at	A	A1TS	POPTR_0002s14790	POPTR_0002s14790 (11)	scaffold_2:10971587-10971947(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202155.1.S1_at	A	A1TS	POPTR_0002s14820	POPTR_0002s14820 (9)	scaffold_2:10985112-10985996(-) (9)	NA	NA	NA	AT2G45380.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1); Has 171 Blast hits to 170 proteins in 31 species: Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). "	LOC_Os06g04390.1	expressed protein	Medtr4g025110.1	Protein of unknown function DUF1442 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202156.1.S1_at	A	A1TS	POPTR_0002s14830	POPTR_0002s14830 (11)	scaffold_2:10988920-10990356(-) (11)	NA	Q8VYP5	Probable S-acyltransferase At3g60800	AT3G60800.1	DHHC-type zinc finger family protein 	LOC_Os03g58960.1	"DHHC zinc finger domain containing protein, expressed"	Medtr4g024940.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.202156.1.S1_s_at	A	A2TS	POPTR_0002s14830	POPTR_0002s14830 (11)//POPTR_0014s06480 (11)	scaffold_14:4912285-4914842(-) (11)//scaffold_2:10988958-10991738(-) (11)	NA	Q8VYP5	Probable S-acyltransferase At3g60800	AT3G60800.1	DHHC-type zinc finger family protein 	LOC_Os03g58960.1	"DHHC zinc finger domain containing protein, expressed"	Medtr4g024940.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.202157.1.S1_at	A	A2TS	POPTR_0002s14840	POPTR_0192s00240 (11)//POPTR_0002s14840 (11)	scaffold_192:32543-33148(-) (11)//scaffold_2:10994805-10995410(+) (11)	NA	P51106	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g44260.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081220.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.202158.1.S1_at	A	A2TS	POPTR_0002s14850	POPTR_0002s14850 (11)//POPTR_0192s00230 (11)	scaffold_192:24644-25720(-) (11)//scaffold_2:11002055-11003116(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.202160.1.S1_at	A	A1TS	POPTR_0002s14910	POPTR_0002s14910 (10)	scaffold_2:11033747-11034927(-) (10)	NA	Q9FQ09	ATP-dependent DNA helicase 2 subunit KU80	AT1G48050.1	Ku80 family protein 	LOC_Os03g63920.1	"KAP-2, putative, expressed"	Medtr4g024770.1	Ku 	GO:0006303|double-strand break repair via nonhomologous end joining||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004003|ATP-dependent DNA helicase activity	GO:0005634|nucleus
PtpAffx.202161.1.S1_at	A	A1TS	POPTR_0002s14940	POPTR_0002s14940 (11)	scaffold_2:11055150-11055810(+) (11)	NA	Q9SZ74	Protein cornichon homolog 5	AT4G12090.1	Cornichon family protein 	LOC_Os12g32180.1	"cornichon protein, putative, expressed"	Medtr5g011880.1	Cornichon 	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	GO:0016020|membrane
PtpAffx.202162.1.S1_at	A	A1TS	POPTR_0002s15000	POPTR_0002s15000 (11)	scaffold_2:11102780-11105391(+) (11)	NA	O22131	LOB domain-containing protein 18	AT2G45420.1	LOB domain-containing protein 18 	LOC_Os03g14270.1	"DUF260 domain containing protein, putative"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202163.1.S1_at	A	A1TS	POPTR_0002s15010	POPTR_0002s15010 (11)	scaffold_2:11106482-11106665(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202164.1.S1_at	A	A1TS	POPTR_0002s15020	POPTR_0002s15020 (11)	scaffold_2:11110285-11110840(+) (11)	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g107020.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.202165.1.S1_at	A	A1TS	POPTR_0002s15020	POPTR_0002s15020 (11)	scaffold_2:11114757-11115949(+) (11)	POPTR_0014s06630 (6)	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g107020.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.202166.1.S1_at	A	A1TS	POPTR_0002s15030	POPTR_0002s15030 (11)	scaffold_2:11136725-11137145(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT2G45430.1	AT-hook motif nuclear-localized protein 22 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	Medtr5g011670.1	Protein of unknown function DUF296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202167.1.S1_at	A	A1TS	POPTR_0002s15050	POPTR_0002s15050 (11)	scaffold_2:11159153-11159669(+) (11)	NA	Q9FVC8	"Dihydrodipicolinate synthase 2, chloroplastic"	AT2G45440.1	dihydrodipicolinate synthase 	LOC_Os04g18200.1	"dihydrodipicolinate synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016829|lyase activity	NA
PtpAffx.202167.1.S1_x_at	A	A1TS	POPTR_0002s15050	POPTR_0002s15050 (11)	scaffold_2:11159153-11159669(+) (11)	NA	Q9FVC8	"Dihydrodipicolinate synthase 2, chloroplastic"	AT2G45440.1	dihydrodipicolinate synthase 	LOC_Os04g18200.1	"dihydrodipicolinate synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016829|lyase activity	NA
PtpAffx.202168.1.S1_at	A	A1TS	POPTR_0002s15060	POPTR_0002s15060 (11)	scaffold_2:11162674-11162740(-) (11)	NA	NA	NA	AT3G60890.2	protein binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202169.1.S1_at	A	A1TS	POPTR_0002s15100	POPTR_0002s15100 (11)	scaffold_2:11204239-11204629(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.1	WD-40 repeat family protein / beige-related 	LOC_Os04g46894.1	"beige/BEACH domain containing protein, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202170.1.S1_at	A	A1TS	POPTR_0002s15100	POPTR_0002s15100 (11)	scaffold_2:11207070-11208653(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.1	WD-40 repeat family protein / beige-related 	LOC_Os04g46894.1	"beige/BEACH domain containing protein, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202171.1.S1_x_at	A	A1TS	POPTR_0002s15100	POPTR_0002s15100 (10)	scaffold_2:11209090-11210502(-) (10)	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.1	WD-40 repeat family protein / beige-related 	LOC_Os04g46894.1	"beige/BEACH domain containing protein, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202173.1.S1_at	A	A1TS	POPTR_0002s15110	POPTR_0002s15110 (11)	scaffold_2:11241593-11241659(+) (11)	NA	O64638	Cytochrome P450 76C3	AT2G45580.1	"cytochrome P450, family 76, subfamily C, polypeptide 3 "	LOC_Os10g08540.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.202174.1.S1_at	A	A1TA	POPTR_0002s15120	POPTR_0002s15120 (10)	scaffold_2:11245495-11245927(-) (10)//scaffold_201:3620-3848(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202177.1.S1_at	A	A1TS	POPTR_0002s15150	POPTR_0002s15150 (11)	scaffold_2:11319820-11320154(+) (11)	NA	O64635	Cytochrome P450 76C4	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.202178.1.S1_at	A	A1TS	POPTR_0002s15200	POPTR_0002s15200 (11)	scaffold_2:11363569-11363966(+) (11)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT2G45590.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	Medtr8g150930.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202180.1.S1_at	A	A1TS	POPTR_0002s15210	POPTR_0002s15210 (11)	scaffold_2:11370082-11370635(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT2G45610.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g14730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr8g150870.1	"hydrolase, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.202181.1.S1_at	A	A1TS	POPTR_0002s15250	POPTR_0002s15250 (11)	scaffold_2:11385955-11387196(+) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT2G45630.2	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01650.1	erythronate-4-phosphate dehydrogenase domain containing protein	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.202182.1.S1_at	A	A1TS	POPTR_0002s15260	POPTR_0002s15260 (11)	scaffold_2:11399326-11399926(+) (11)	NA	Q39110	Gibberellin 20 oxidase 1	AT4G25420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g63970.1	"gibberellin 20 oxidase 1, putative, expressed"	Medtr1g129980.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.202184.1.S1_at	A	A1TS	POPTR_0002s15330	POPTR_0002s15330 (11)	scaffold_2:11478737-11479420(+) (11)	NA	Q9LLL8	Xylem serine proteinase 1	AT4G00230.1	xylem serine peptidase 1 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	AC233100_30.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide; Peptidase S8A, bacillopeptidase F AC233100.6 99564-105523 E EGN_Mt090430 200"	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.202185.1.S1_at	A	A1TS	POPTR_0002s15370	POPTR_0002s15370 (9)	scaffold_2:11507318-11507870(-) (9)	NA	B0JYZ2	Peroxisomal membrane protein PEX16	AT2G45690.1	shrunken seed protein (SSE1) 	LOC_Os02g03070.1	"SSE1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202186.1.S1_at	A	A1TS	POPTR_0002s15390	POPTR_0002s15390 (10)	scaffold_2:11514487-11515145(-) (10)	NA	Q16MG9	ATPase ASNA1 homolog	AT1G01910.4	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g34970.1	"arsenical pump-driving ATPase, putative, expressed"	Medtr1g120500.1	Anion-transporting ATPase 	GO:0006875|cellular metal ion homeostasis	GO:0005524|ATP binding	NA
PtpAffx.202187.1.S1_at	A	A1TS	POPTR_0002s15410	POPTR_0002s15410 (11)	scaffold_2:11528958-11529718(-) (11)	NA	NA	NA	AT4G00770.1	unknown protein; Has 127 Blast hits to 120 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 8; Plants - 62; Viruses - 3; Other Eukaryotes - 46 (source: NCBI BLink). 	LOC_Os03g02660.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202188.1.S1_at	A	A1MS	POPTR_0002s15420	POPTR_0002s15420 (9)	scaffold_2:11541337-11542376(+) (9)	NA	Q9LPD2	Flap endonuclease GEN-like 1	AT1G01880.1	5'-3' exonuclease family protein 	LOC_Os09g35000.1	"flap endonuclease, putative, expressed"	Medtr7g083910.1	"Helix-hairpin-helix motif, class 2 "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0004518|nuclease activity	NA
PtpAffx.202189.1.S1_at	A	A1TS	POPTR_0002s15440	POPTR_0002s15440 (11)	scaffold_2:11550339-11550779(-) (11)	NA	NA	NA	AT1G01840.1	unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g083890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20219.1.A1_a_at	A	A1TS	POPTR_0004s07420	POPTR_0004s07420 (11)	scaffold_4:6115973-6116406(-) (11)	NA	Q80SY5	Pre-mRNA-splicing factor 38B	AT5G37370.1	PRP38 family protein 	LOC_Os05g08600.2	"splicing factor, putative, expressed"	Medtr5g085030.1	PRP38 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202190.1.S1_at	A	A1TS	POPTR_0002s15450	POPTR_0002s15450 (11)	scaffold_2:11551629-11553615(-) (11)	NA	Q9LEW8	"Uncharacterized protein At3g61080, chloroplastic"	AT3G61080.1	Protein kinase superfamily protein 	LOC_Os03g02640.1	"methylthioribose kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202191.1.S1_at	A	A1TS	POPTR_0002s15480	POPTR_0002s15480 (11)	scaffold_2:11572139-11572626(+) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os07g10410.1	AP2 domain containing protein	Medtr6g013450.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.202194.1.S1_at	A	A1TS	POPTR_0002s15580	POPTR_0002s15580 (11)	scaffold_2:11626310-11626519(+) (11)	NA	Q9ZPH9	Probable methyltransferase PMT15	AT4G00750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.202195.1.S1_at	A	A1TS	POPTR_0002s15590	POPTR_0002s15590 (11)	scaffold_2:11636004-11636076(+) (11)	NA	P45432	COP9 signalosome complex subunit 1	AT3G61140.1	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os03g02540.1	"proteasome subunit, putative, expressed"	Medtr7g083770.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202195.1.S1_x_at	A	A1TS	POPTR_0002s15590	POPTR_0002s15590 (11)	scaffold_2:11635857-11636076(+) (11)	NA	P45432	COP9 signalosome complex subunit 1	AT3G61140.1	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os03g02540.1	"proteasome subunit, putative, expressed"	Medtr7g083770.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202196.1.S1_at	A	A1TS	POPTR_0002s15610	POPTR_0002s15610 (11)	scaffold_2:11656186-11656627(+) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202196.1.S1_s_at	A	A1TS	POPTR_0002s15610	POPTR_0002s15610 (11)	scaffold_2:11656119-11656659(+) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202197.1.S1_at	A	A1TS	POPTR_0002s15620	POPTR_0002s15620 (11)	scaffold_2:11658004-11658815(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202198.1.S1_at	A	A1TS	POPTR_0002s15630	POPTR_0002s15630 (11)	scaffold_2:11673253-11674058(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202199.1.S1_at	A	A1TS	POPTR_0002s15650	POPTR_0002s15650 (11)	scaffold_2:11682232-11682686(-) (11)	NA	Q9SVP7	Pentatricopeptide repeat-containing protein At4g13650	AT3G61170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g07780.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202200.1.S1_at	A	A1TS	POPTR_0002s15650	POPTR_0002s15650 (11)	scaffold_2:11683796-11684350(-) (11)	NA	Q9SVP7	Pentatricopeptide repeat-containing protein At4g13650	AT3G61170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g07780.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202204.1.S1_at	A	A1TS	POPTR_0002s15860	POPTR_0002s15860 (10)	scaffold_2:11818963-11819556(-) (11)	NA	O65272	"K(+) efflux antiporter 2, chloroplastic"	AT4G00630.1	K+ efflux antiporter 2 	LOC_Os04g58620.1	"potasium efflux antiporter protein, putative, expressed"	Medtr7g084460.1	TrkA-N; Sodium/hydrogen exchanger 	GO:0006813|potassium ion transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.202205.1.S1_at	A	A1TS	POPTR_0002s15930	POPTR_0002s15930 (11)	scaffold_2:11870539-11871063(+) (11)	NA	Q7ZVE6	KDEL motif-containing protein 1	AT5G23850.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os02g42920.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202206.1.S1_at	A	A1TS	POPTR_0002s15940	POPTR_0002s15940 (11)	scaffold_2:11874378-11875073(+) (11)	NA	Q6UW63	KDEL motif-containing protein 1	AT5G23850.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os04g45140.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202207.1.S1_at	A	A1TS	POPTR_0002s15980	POPTR_0002s15980 (11)	scaffold_2:11914538-11915964(+) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT4G00710.1	BR-signaling kinase 3 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202208.1.S1_at	A	A1TS	POPTR_0002s16000	POPTR_0002s16000 (11)	scaffold_2:11922235-11922601(-) (11)	NA	Q6H5X0	Putative ripening-related protein 2	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	Medtr7g084940.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202209.1.S1_at	A	A1TS	POPTR_0002s16010	POPTR_0002s16010 (11)	scaffold_2:11924702-11925060(-) (11)	NA	Q6H5X0	Putative ripening-related protein 2	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	Medtr7g011840.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202210.1.S1_at	A	A1TS	POPTR_0002s16030	POPTR_0002s16030 (11)	scaffold_2:11933397-11934317(-) (11)	NA	Q54I36	Dual specificity protein kinase pyk3	AT1G14000.1	VH1-interacting kinase 	LOC_Os07g43900.1	"protein kinase domain containing protein, expressed"	Medtr5g099160.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202211.1.S1_at	A	A1TS	POPTR_0002s16040	POPTR_0002s16040 (11)	scaffold_2:11937906-11939636(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT4G18950.1	Integrin-linked protein kinase family 	LOC_Os01g54480.3	"serine/threonine protein kinase, putative, expressed"	Medtr5g099160.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202212.1.S1_at	A	A1TS	POPTR_0002s16050	POPTR_0002s16050 (11)	scaffold_2:11947019-11947247(+) (11)	NA	NA	NA	AT4G00525.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g084440.1	"T1N6.11, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202212.1.S1_x_at	A	A1TS	POPTR_0002s16050	POPTR_0002s16050 (11)	scaffold_2:11945457-11947247(+) (11)	NA	NA	NA	AT4G00525.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g084440.1	"T1N6.11, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202214.1.S1_at	A	A1TS	POPTR_0002s16070	POPTR_0002s16070 (11)	scaffold_2:11964289-11964616(-) (11)	NA	O80831	Beta-amylase 7	AT2G45880.1	beta-amylase 7 	LOC_Os09g39570.1	"beta-amylase, putative, expressed"	Medtr5g026370.1	"Glycoside hydrolase, family 14; BZR1, transcriptional repressor "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.202215.1.S1_at	A	A1TS	POPTR_0002s16080	POPTR_0002s16080 (11)	scaffold_2:11980099-11980757(+) (11)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47040.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.202216.1.S1_at	A	A1TS	POPTR_0002s16090	POPTR_0002s16090 (11)	scaffold_2:11988572-11989080(-) (11)	NA	Q39110	Gibberellin 20 oxidase 1	AT4G23340.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os07g01340.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr7g087320.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.202217.1.S1_at	A	A1TS	POPTR_0002s16100	POPTR_0002s16100 (11)	scaffold_2:11999402-12000181(+) (11)	NA	Q9LQ89	Rop guanine nucleotide exchange factor 2	AT4G00460.2	RHO guanyl-nucleotide exchange factor 3 	LOC_Os10g40270.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g087330.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.202218.1.S1_at	A	A1TS	POPTR_0002s16130	POPTR_0002s16130 (9)	scaffold_2:12031752-12032257(-) (9)	NA	NA	NA	AT4G00440.3	Protein of unknown function (DUF3741) 	LOC_Os10g40250.2	expressed protein	Medtr7g087380.1	"{, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202218.1.S1_s_at	A	A1TS	POPTR_0002s16130	POPTR_0002s16130 (11)	scaffold_2:12031695-12032156(-) (11)	NA	NA	NA	AT4G00440.3	Protein of unknown function (DUF3741) 	LOC_Os10g40250.2	expressed protein	Medtr7g087380.1	"{, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202219.1.S1_at	A	A1TS	POPTR_0002s16160	POPTR_0002s16160 (11)	scaffold_2:12082106-12082728(+) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os09g39640.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.202220.1.S1_at	A	A1TS	POPTR_0002s16180	POPTR_0002s16180 (11)	scaffold_2:12098579-12098959(+) (11)	NA	Q5PQL3	Signal peptide peptidase-like 2B	AT1G01650.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 4 	LOC_Os06g51430.1	"signal peptide peptidase-like 2B, putative, expressed"	Medtr8g031970.1	"Protease-associated PA; Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.202221.1.S1_at	A	A1TS	POPTR_0002s16190	POPTR_0002s16190 (11)	scaffold_2:12100199-12102404(-) (11)	NA	Q8LF97	SKP1-like protein 21	AT3G61415.2	SKP1-like 21 	LOC_Os03g01660.1	"SKP1, putative, expressed"	Medtr8g031960.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.202221.1.S1_s_at	A	A1TS	POPTR_0002s16190	POPTR_0002s16190 (11)	scaffold_2:12100257-12101196(-) (11)	NA	Q8LF97	SKP1-like protein 21	AT3G61415.2	SKP1-like 21 	LOC_Os03g01660.1	"SKP1, putative, expressed"	Medtr8g031960.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.202222.1.S1_at	A	A1TS	POPTR_0002s16250	POPTR_0002s16250 (11)	scaffold_2:12153825-12154339(-) (11)	NA	NA	NA	AT2G46040.1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein 	LOC_Os04g08410.1	"ELM2 domain containing protein, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.202223.1.S1_at	A	A1TS	POPTR_0002s16260	POPTR_0002s16260 (11)	scaffold_2:12166898-12168300(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT4G00350.1	MATE efflux family protein 	LOC_Os08g44870.1	"MATE efflux family protein, putative, expressed"	Medtr1g126620.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.202224.1.S1_at	A	A1MA	POPTR_0002s16290	POPTR_0002s16290 (9)	scaffold_2:12180111-12180467(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202225.1.S1_at	A	A1TS	POPTR_0002s16320	POPTR_0002s16320 (11)	scaffold_2:12206837-12207324(-) (11)	NA	NA	NA	AT4G00310.2	Putative membrane lipoprotein 	NA	NA	Medtr3g019620.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202226.1.S1_at	A	A1TS	POPTR_0002s16360	POPTR_0002s16360 (11)	scaffold_2:12244663-12247384(+) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT4G00290.1	Mechanosensitive ion channel protein 	LOC_Os04g48940.2	"uncharacterized mscS family protein, putative, expressed"	AC235567_81.1	MscS Mechanosensitive ion channel AC235567.1 293100-287373 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.202227.1.S1_at	A	A1TS	POPTR_0002s16430	POPTR_0002s16430 (11)	scaffold_2:12291512-12291964(-) (11)	NA	NA	NA	AT2G46100.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os04g48860.3	expressed protein	AC235567_1.1	"SOUL heme-binding protein, related AC235567.1 138-3392 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202229.1.S1_at	A	A1TS	POPTR_0002s16550	POPTR_0002s16550 (11)	scaffold_2:12389880-12391162(-) (11)	NA	NA	NA	AT4G01270.1	RING/U-box superfamily protein 	LOC_Os08g05560.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_86.1	"Zinc finger, RING-type AC235567.1 321373-315992 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202232.1.S1_at	A	A1TS	POPTR_0002s16640	POPTR_0002s16640 (11)	scaffold_2:12451420-12452080(+) (11)	NA	Q8GY11	Probable WRKY transcription factor 43	AT2G46130.1	WRKY DNA-binding protein 43 	LOC_Os01g53260.1	"OsWRKY23 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088920.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202232.1.S1_x_at	A	A1TS	POPTR_0002s16640	POPTR_0002s16640 (11)	scaffold_2:12451310-12452080(+) (11)	NA	Q8GY11	Probable WRKY transcription factor 43	AT2G46130.1	WRKY DNA-binding protein 43 	LOC_Os01g53260.1	"OsWRKY23 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088920.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202233.1.S1_at	A	A1TS	POPTR_0002s16660	POPTR_0002s16660 (11)	scaffold_2:12463033-12463533(+) (11)	NA	NA	NA	AT2G46150.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g53470.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr8g005060.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.202234.1.S1_at	A	A1TS	POPTR_0002s16670	POPTR_0002s16670 (11)	scaffold_2:12468689-12469159(+) (11)	NA	Q9M313	RING-H2 finger protein ATL68	AT3G61550.1	RING/U-box superfamily protein 	LOC_Os01g53500.1	"RING-H2 finger protein ATL2M, putative, expressed"	Medtr7g089020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202236.1.S1_at	A	A1TS	POPTR_0002s16700	POPTR_0002s16700 (11)	scaffold_2:12478097-12480206(-) (11)	NA	Q8VYU6	Golgin candidate 4	AT2G46180.1	golgin candidate 4 	LOC_Os08g29730.1	"intracellular protein transport protein USO1-related, putative, expressed"	Medtr7g088950.1	"GC4, putative "	GO:0016032|viral reproduction	NA	NA
PtpAffx.202237.1.S1_at	A	A1TS	POPTR_0002s16710	POPTR_0002s16710 (11)	scaffold_2:12489440-12490552(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202238.1.S1_at	A	A1TS	POPTR_0002s16720	POPTR_0002s16720 (11)	scaffold_2:12493663-12494237(+) (11)	NA	P23472	Hevamine-A	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr5g046400.1	"Glycoside hydrolase, family 18 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.202239.1.S1_at	A	A1TS	POPTR_0002s16760	POPTR_0002s16760 (11)	scaffold_2:12524703-12525074(+) (11)	NA	Q54RP0	UDP-galactose:fucoside alpha-3-galactosyltransferase	AT4G01220.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os05g32120.1	"alpha 1,3-xylosyltransferase, putative, expressed"	AC235671_3.1	Reticulon AC235671.2 18499-13273 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202240.1.S1_at	A	A1TS	POPTR_0002s16770	POPTR_0002s16770 (11)	scaffold_2:12535767-12536893(+) (11)	NA	NA	NA	AT4G01210.1	glycosyl transferase family 1 protein 	LOC_Os01g43380.1	"glycosyltransferase family protein 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202241.1.S1_at	A	A1TS	POPTR_0002s16790	POPTR_0002s16790 (11)	scaffold_2:12546938-12547490(+) (11)	NA	NA	NA	AT2G46240.1	BCL-2-associated athanogene 6 	NA	NA	AC233577_23.1	"IQ calmodulin-binding region; Apoptosis regulator Bcl-2 protein, BAG AC233577.5 108766-103915 E EGN_Mt090430 200"	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.202243.1.S1_at	A	A1TS	POPTR_0002s16820	POPTR_0002s16820 (11)	scaffold_2:12580545-12581139(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT5G41620.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g31190.1	"intracellular protein transport protein USO1-related, putative, expressed"	Medtr5g009870.1	"Uncharacterized protein At5g41620, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202244.1.S1_at	A	A1TS	POPTR_0002s16860	POPTR_0002s16860 (11)	scaffold_2:12611755-12612266(+) (11)	NA	NA	NA	AT4G01140.1	Protein of unknown function (DUF1191) 	LOC_Os12g02550.1	expressed protein	Medtr5g083560.1	Protein of unknown function DUF1191 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202245.1.S1_at	A	A1TS	POPTR_0002s16870	POPTR_0002s16870 (11)	scaffold_2:12621373-12622320(+) (11)	NA	Q99089	Common plant regulatory factor 1	AT2G46270.1	G-box binding factor 3 	LOC_Os05g49420.1	"transcription factor, putative, expressed"	Medtr7g143570.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.202246.1.S1_at	A	A1TS	POPTR_0002s16890	POPTR_0002s16890 (11)	scaffold_2:12636111-12636662(+) (11)	NA	NA	NA	AT2G46300.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g39290.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr7g143600.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.202247.1.S1_at	A	A1TS	POPTR_0002s16900	POPTR_0002s16900 (9)	scaffold_2:12645750-12648119(+) (10)	NA	Q9SUE3	Ethylene-responsive transcription factor CRF4	AT4G27950.1	cytokinin response factor 4 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr3g124710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.202248.1.S1_at	A	A1TS	POPTR_0002s16910	POPTR_0002s16910 (11)	scaffold_2:12653634-12654499(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202249.1.S1_at	A	A1TS	POPTR_0002s16930	POPTR_0002s16930 (11)	scaffold_2:12665356-12666369(-) (11)	NA	P38558	Tubulin gamma-2 chain	AT5G05620.1	gamma-tubulin  complex protein 2 	LOC_Os05g06450.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g143680.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.202249.1.S1_s_at	A	A2TS	POPTR_0002s16930	POPTR_0002s16930 (11)//POPTR_0014s09060 (11)	scaffold_14:6686490-6688044(-) (11)//scaffold_2:12665559-12668131(-) (11)	NA	P38558	Tubulin gamma-2 chain	AT5G05620.1	gamma-tubulin  complex protein 2 	LOC_Os05g06450.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g143680.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.20225.1.A1_s_at	A	A1TS	POPTR_0008s12370	POPTR_0008s12370 (11)	scaffold_8:7981217-7981407(-) (11)	NA	NA	NA	AT2G01190.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os01g04650.1	"PB1 domain containing protein, expressed"	Medtr8g096190.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20225.2.A1_at	A	A1TA	POPTR_0008s12370	POPTR_0008s12370 (11)	scaffold_8:7980983-7981349(+) (11)	NA	NA	NA	AT2G01190.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os01g04650.1	"PB1 domain containing protein, expressed"	Medtr8g096190.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202250.1.S1_at	A	A1MS	POPTR_0002s16945	POPTR_0002s16945 (11)	scaffold_2:12682057-12682612(+) (11)	NA	NA	NA	AT5G41730.1	Protein kinase family protein 	LOC_Os01g43350.1	"protein kinase family protein, putative, expressed"	Medtr5g009670.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202251.1.S1_at	A	A1TS	POPTR_0002s16990	POPTR_0002s16990 (11)	scaffold_2:12752316-12752840(-) (11)	NA	NA	NA	AT3G58800.1	unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g54440.1	expressed protein	Medtr5g099080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202252.1.S1_at	A	A1TS	POPTR_0002s17010	POPTR_0002s17010 (11)	scaffold_2:12774195-12774731(-) (11)	NA	Q9SKD9	Probable WRKY transcription factor 46	AT2G46400.1	WRKY DNA-binding protein 46 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202253.1.S1_at	A	A1TS	POPTR_0002s17020	POPTR_0002s17020 (11)	scaffold_2:12786172-12786727(+) (11)	NA	A4GYS4	Apocytochrome f	ATCG00540.1	photosynthetic electron transfer A 	LOC_Os02g24596.1	"apocytochrome f precursor, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202255.1.S1_at	A	A1TS	POPTR_0002s17060	POPTR_0002s17060 (11)	scaffold_2:12821528-12821971(+) (11)	NA	NA	NA	AT4G01037.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os05g49610.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr3g105870.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202257.1.S1_at	A	A1TS	POPTR_0002s17080	POPTR_0002s17080 (11)	scaffold_2:12858879-12859676(+) (11)	NA	NA	NA	AT3G61680.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g43140.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.202258.1.S1_at	A	A1TS	POPTR_0002s17090	POPTR_0002s17090 (11)	scaffold_2:12867511-12867712(+) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.202259.1.S1_at	A	A1TS	POPTR_0002s17150	POPTR_0002s17150 (11)	scaffold_2:12938486-12939842(-) (11)	NA	P0CH01	Putative RING-H2 finger protein ATL21A	AT2G46495.1	RING/U-box superfamily protein 	LOC_Os08g37760.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235758_12.1	"Zinc finger, RING-type AC235758.1 57299-60764 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20226.1.A1_at	A	A1TS	POPTR_0008s19380	POPTR_0008s19380 (11)	scaffold_8:13333538-13334456(+) (11)	NA	Q8L5Y9	Pantothenate kinase 2	AT4G32180.1	pantothenate kinase 2 	LOC_Os09g36270.1	"pantothenate kinase, putative, expressed"	Medtr3g113960.1	Eukaryotic pantothenate kinase 	GO:0015937|coenzyme A biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004594|pantothenate kinase activity	NA
PtpAffx.20226.2.S1_at	A	A1TS	POPTR_0008s19380	POPTR_0008s19380 (11)	scaffold_8:13329406-13330480(+) (11)	NA	Q8L5Y9	Pantothenate kinase 2	AT4G32180.1	pantothenate kinase 2 	LOC_Os09g36270.1	"pantothenate kinase, putative, expressed"	Medtr3g113960.1	Eukaryotic pantothenate kinase 	GO:0015937|coenzyme A biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004594|pantothenate kinase activity	NA
PtpAffx.202262.1.S1_at	A	A1TS	POPTR_0002s17180	POPTR_0002s17180 (10)	scaffold_2:12955511-12956125(-) (11)	NA	Q9M364	Histone-lysine N-methyltransferase ATX3	AT3G61740.2	SET domain protein 14 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202264.1.S1_at	A	A1TS	POPTR_0002s17200	POPTR_0002s17200 (11)	scaffold_2:12988140-12988975(+) (11)	NA	O15818	Protein KIAA0664 homolog	AT1G01320.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g23990.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	AC235758_23.1	Tetratricopeptide-like helical; AC235758.1 151415-160426 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202266.1.S1_at	A	A1TS	POPTR_0002s17230	POPTR_0002s17230 (11)	scaffold_2:13010267-13013000(+) (11)	NA	O32107	Uncharacterized membrane protein yuiD	AT3G61770.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os05g45770.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202267.1.S1_at	A	A1TS	POPTR_0002s17260	POPTR_0002s17260 (11)	scaffold_2:13025837-13026362(-) (11)	NA	Q2YD98	Uncharacterized protein KIAA1530	AT3G61800.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR018610), ENTH/VHS (InterPro:IPR008942); Has 308 Blast hits to 279 proteins in 95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi - 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink). "	LOC_Os02g19170.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202268.1.S1_at	A	A1TS	POPTR_0002s17280	POPTR_0002s17280 (11)	scaffold_2:13046254-13046746(-) (11)	NA	P24465	Cytochrome P450 71A1	AT1G01280.1	"cytochrome P450, family 703, subfamily A, polypeptide 2 "	LOC_Os08g03682.1	"cytochrome P450, putative, expressed"	Medtr7g104320.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.202269.1.S1_at	A	A1TS	POPTR_0002s17290	POPTR_0002s17290 (11)	scaffold_2:13052362-13052712(+) (11)	NA	O65155	RNA polymerase II transcriptional coactivator KELP	AT4G00980.1	zinc knuckle (CCHC-type) family protein 	LOC_Os01g50960.1	"RNA polymerase II transcriptional coactivator KELP, putative, expressed"	Medtr6g077130.1	"Zinc finger, CCHC-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003713|transcription coactivator activity||GO:0008270|zinc ion binding	NA
PtpAffx.202270.1.S1_at	A	A1TS	POPTR_0002s17300	POPTR_0002s17300 (11)	scaffold_2:13055027-13055769(-) (11)	NA	NA	NA	AT3G49250.1	defective in meristem silencing 3 	LOC_Os01g13404.1	"ATP binding protein, putative, expressed"	Medtr3g123840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202271.1.S1_at	A	A1TS	POPTR_0002s17310	POPTR_0002s17310 (11)	scaffold_2:13061578-13062438(-) (11)	NA	Q9ZPY8	Transcription factor ABA-INDUCIBLE bHLH-TYPE	AT2G46510.1	ABA-inducible BHLH-type transcription factor 	LOC_Os01g13460.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.202271.1.S1_s_at	A	A1TS	POPTR_0002s17310	POPTR_0002s17310 (11)	scaffold_2:13062296-13062744(-) (11)	NA	Q9ZPY8	Transcription factor ABA-INDUCIBLE bHLH-TYPE	AT2G46510.1	ABA-inducible BHLH-type transcription factor 	LOC_Os01g13460.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.202272.1.S1_at	A	A1TS	POPTR_0002s17340	POPTR_0002s17340 (11)	scaffold_2:13109697-13110291(+) (11)	NA	Q9ZPY7	Exportin-2	AT2G46520.1	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative "	LOC_Os01g13430.1	"importin-alpha re-exporter, putative, expressed"	Medtr6g062000.1	Armadillo-like helical 	GO:0008283|cell proliferation||GO:0006886|intracellular protein transport	GO:0008262|importin-alpha export receptor activity	GO:0005737|cytoplasm||GO:0005634|nucleus
PtpAffx.202273.1.S1_at	A	A1TS	POPTR_0002s17350	POPTR_0002s17350 (11)	scaffold_2:13129445-13129912(+) (11)	NA	Q9ZPY6	Auxin response factor 11	AT2G46530.3	auxin response factor 11 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr4g019570.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.202274.1.S1_at	A	A1TS	POPTR_0002s17400	POPTR_0002s17400 (11)	scaffold_2:13160633-13160978(-) (11)	NA	Q6PNC0	DmX-like protein 1	AT2G46560.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g37120.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202274.1.S1_s_at	A	A1TS	POPTR_0002s17400	POPTR_0002s17400 (11)	scaffold_2:13160481-13161073(-) (11)	NA	Q6PNC0	DmX-like protein 1	AT2G46560.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g37120.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202275.1.S1_at	A	A1TS	POPTR_0002s17420	POPTR_0002s17420 (11)	scaffold_2:13183368-13183808(-) (11)	NA	NA	NA	AT4G10840.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g125600.1	"kinesin light chain-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202276.1.S1_at	A	A1TS	POPTR_0002s17430	POPTR_0002s17430 (11)	scaffold_2:13193937-13194418(+) (11)	NA	NA	NA	AT4G09510.1	cytosolic invertase 2 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202277.1.S1_at	A	A1TS	POPTR_0002s17430	POPTR_0002s17430 (11)	scaffold_2:13197353-13197998(+) (11)	NA	NA	NA	AT4G09510.1	cytosolic invertase 2 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202279.1.S1_s_at	A	A1TS	POPTR_0002s17490	POPTR_0002s17490 (11)	scaffold_2:13249481-13249987(+) (11)	NA	Q43385	Dof zinc finger protein DOF3.7	AT3G61850.3	Dof-type zinc finger DNA-binding family protein 	LOC_Os04g47990.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.202280.1.S1_at	A	A1TS	POPTR_0002s17510	POPTR_0002s17510 (11)	scaffold_2:13267747-13268207(+) (11)	NA	Q84TG3	E3 ubiquitin-protein ligase PUB23	AT2G35930.1	plant U-box 23 	LOC_Os04g58920.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.202281.1.S1_at	A	A1TS	POPTR_0002s17540	POPTR_0002s17540 (10)	scaffold_2:13297466-13298050(-) (10)	NA	Q8N0W3	L-fucose kinase	AT1G01220.1	L-fucokinase/GDP-L-fucose pyrophosphorylase 	LOC_Os03g02410.1	"GHMP kinases ATP-binding protein, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.202282.1.S1_at	A	A1TS	POPTR_0002s17560	POPTR_0002s17560 (11)	scaffold_2:13321177-13321949(-) (11)	NA	P92964	Arginine/serine-rich-splicing factor RSP31	AT3G61860.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g02870.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g029490.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202284.1.S1_at	A	A1TS	POPTR_0002s17580	POPTR_0002s17580 (11)	scaffold_2:13400485-13400979(-) (11)	NA	NA	NA	AT2G46640.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	NA	NA	Medtr8g029430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202285.1.S1_at	A	A1MS	POPTR_0002s17600	POPTR_0002s17600 (11)	scaffold_2:13419467-13419710(-) (11)	NA	NA	NA	AT3G61870.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). "	LOC_Os02g03010.1	expressed protein	Medtr7g145810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202286.1.S1_at	A	A1TS	POPTR_0002s17600	POPTR_0002s17600 (9)	scaffold_2:13421137-13421249(-) (9)	NA	NA	NA	AT3G61870.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). "	LOC_Os02g03010.1	expressed protein	Medtr7g145810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202287.1.S1_at	A	A1TS	POPTR_0002s17610	POPTR_0002s17610 (11)	scaffold_2:13442969-13443282(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G46620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g02330.1	"AAA-type ATPase family protein, putative, expressed"	Medtr7g145800.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.202288.1.S1_at	A	A1TS	POPTR_0002s17630	POPTR_0002s17630 (10)	scaffold_2:13468442-13468999(+) (11)	NA	Q9LM76	U-box domain-containing protein 44	AT1G20780.1	senescence-associated E3 ubiquitin ligase 1 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.202289.1.S1_at	A	A1TS	POPTR_0002s17630	POPTR_0002s17630 (11)	scaffold_2:13471998-13472477(+) (11)	NA	Q9LM76	U-box domain-containing protein 44	AT1G20780.1	senescence-associated E3 ubiquitin ligase 1 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.202290.1.S1_at	A	A1TS	POPTR_0002s17640	POPTR_0002s17640 (11)	scaffold_2:13474982-13475326(+) (11)	NA	Q9FNN7	Pentatricopeptide repeat-containing protein At5g08510	AT5G08510.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g03570.2	"pentatricopeptide, putative, expressed"	Medtr8g029460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202291.1.S1_at	A	A1TS	POPTR_0002s17660	POPTR_0002s17660 (11)	scaffold_2:13483953-13484409(-) (11)	NA	P0C8A0	Pentatricopeptide repeat-containing protein At3g49730	AT3G49730.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g51840.1	"PPR repeat containing protein, expressed"	Medtr1g137270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202294.1.S1_at	A	A1TS	POPTR_0002s17760	POPTR_0002s17760 (11)	scaffold_2:13611177-13612410(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202295.1.S1_at	A	A1TS	POPTR_0002s17780	POPTR_0002s17780 (10)	scaffold_2:13625517-13625678(+) (10)	NA	Q9LFF1	"Pentatricopeptide repeat-containing protein At3g53700, chloroplastic"	AT3G53700.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g40020.1	"PPR repeat containing protein, expressed"	AC233662_58.1	Pentatricopeptide repeat AC233662.1 266570-264088 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202296.1.S1_at	A	A1TS	POPTR_0002s17800	POPTR_0002s17800 (11)	scaffold_2:13634375-13635193(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202297.1.S1_at	A	A1TS	POPTR_0002s17810	POPTR_0002s17810 (9)	scaffold_2:13637576-13638159(-) (11)	NA	NA	NA	AT1G01180.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g34320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202298.1.S1_at	A	A1TS	POPTR_0002s17900	POPTR_0002s17900 (11)	scaffold_2:13707285-13707827(-) (11)	NA	P58710	L-gulonolactone oxidase	AT2G46760.1	"D-arabinono-1,4-lactone oxidase family protein "	LOC_Os03g36530.1	"FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed"	Medtr5g005730.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.202298.1.S1_s_at	A	A2TS	POPTR_0002s17900	POPTR_0002s17910 (11)//POPTR_0002s17900 (11)	scaffold_2:13707364-13707883(-) (11)//scaffold_2:13732619-13733138(-) (11)	NA	P58710	L-gulonolactone oxidase	AT2G46760.1	"D-arabinono-1,4-lactone oxidase family protein "	LOC_Os03g36530.1	"FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed"	Medtr5g005730.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.202299.1.S1_at	A	A1TS	POPTR_0002s17910	POPTR_0002s17910 (11)	scaffold_2:13732609-13733077(-) (11)	NA	NA	NA	AT2G46760.1	"D-arabinono-1,4-lactone oxidase family protein "	LOC_Os02g03210.1	"FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed"	Medtr5g005720.1	"FAD binding domain containing protein, identical, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202300.1.S1_at	A	A1TS	POPTR_0002s17940	POPTR_0002s17940 (11)	scaffold_2:13778159-13778659(-) (11)	NA	O04905	Uridylate kinase	AT5G26667.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53790.1	"adenylate kinase, putative, expressed"	Medtr8g009290.1	"Adenylate/cytidine kinase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202301.1.S1_at	A	A1TS	POPTR_0002s17950	POPTR_0002s17950 (11)	scaffold_2:13795526-13796096(-) (11)	NA	Q84WP6	NAC domain-containing protein 43	AT2G46770.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g02300.1	"no apical meristem protein, putative, expressed"	Medtr8g106290.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.202302.1.S1_s_at	A	A1TS	POPTR_0002s17970	POPTR_0002s17970 (11)	scaffold_2:13831207-13831641(-) (11)	NA	NA	NA	AT3G61920.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64700.1); Has 77 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr8g018700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202303.1.S1_s_at	A	A2TS	POPTR_0002s17990	POPTR_0014s10090 (11)//POPTR_0002s17990 (11)	scaffold_14:7575307-7575360(+) (11)//scaffold_2:13891613-13891666(+) (11)	NA	Q9H0Z9	RNA-binding protein 38	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	CU179634_3.1	RNA-binding region RNP-1 (RNA recognition motif) CU179634.6 7913-3383 H EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202303.1.S1_x_at	A	A1TS	POPTR_0002s17990	POPTR_0002s17990 (11)	scaffold_2:13891540-13891925(+) (11)	NA	Q9H0Z9	RNA-binding protein 38	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	CU179634_3.1	RNA-binding region RNP-1 (RNA recognition motif) CU179634.6 7913-3383 H EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202304.1.S1_at	A	A1TS	POPTR_0002s18000	POPTR_0002s18000 (11)	scaffold_2:13898331-13898477(+) (11)	NA	Q9SYK1	Pentatricopeptide repeat-containing protein At1g05600	AT1G05600.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g14530.3	"PPR repeat containing protein, expressed"	Medtr5g049980.1	Intermediate filament protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202304.1.S1_s_at	A	A1TS	POPTR_0002s18000	POPTR_0002s18000 (11)	scaffold_2:13898242-13898824(+) (11)	NA	Q9SYK1	Pentatricopeptide repeat-containing protein At1g05600	AT1G05600.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g14530.3	"PPR repeat containing protein, expressed"	Medtr5g049980.1	Intermediate filament protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202305.1.S1_at	A	A1TS	POPTR_0002s18030	POPTR_0002s18030 (11)	scaffold_2:13915787-13916234(-) (11)	NA	Q8L838	Conserved oligomeric Golgi complex subunit 4	AT4G01400.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167); Has 465 Blast hits to 425 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 153; Fungi - 166; Plants - 45; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). 	LOC_Os02g25840.1	"conserved oligomeric Golgi complex component 4, related, putative, expressed"	Medtr7g146090.1	COG4 transport 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202306.1.S1_at	A	A1TS	POPTR_0002s18050	POPTR_0002s18050 (11)	scaffold_2:13932134-13932544(+) (11)	NA	Q689G6	Two-component response regulator-like PRR95	AT2G46790.1	pseudo-response regulator 9 	LOC_Os09g36220.2	"response regulator receiver domain containing protein, expressed"	Medtr7g146130.1	Response regulator receiver; CCT 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.202307.1.S1_at	A	A1TS	POPTR_0002s18200	POPTR_0002s18200 (11)	scaffold_2:14130976-14131673(-) (11)	NA	Q3ZDQ4	Serine/threonine-protein kinase atg1	AT3G61960.1	Protein kinase superfamily protein 	LOC_Os03g02980.2	"CAMK_CAMK_like_ULKh_APGy.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g144060.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202308.1.S1_at	A	A1TS	POPTR_0002s18210	POPTR_0002s18210 (11)	scaffold_2:14152488-14153018(+) (11)	NA	Q8S8N4	Probably inactive receptor-like protein kinase At2g46850	AT2G46850.1	Protein kinase superfamily protein 	LOC_Os10g21090.1	"ATP binding protein, putative, expressed"	AC233685_88.1	Protein kinase-like AC233685.2 373684-372698 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202309.1.S1_at	A	A1TS	POPTR_0002s18240	POPTR_0002s18240 (10)	scaffold_2:14171342-14171963(-) (10)	NA	Q9SP32	Endoribonuclease Dicer homolog	AT1G01040.1	dicer-like 1 	LOC_Os03g02970.1	"Dicer, putative, expressed"	Medtr7g146220.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; ; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0004525|ribonuclease III activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.20231.1.A1_at	A	A1TS	POPTR_0014s12560	POPTR_0014s12560 (11)	scaffold_14:9243088-9244750(-) (11)	NA	Q505J9	ATPase family AAA domain-containing protein 1	AT1G02890.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr1g108580.1	"Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central region; SMAD/FHA "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.202312.1.S1_at	A	A1TS	POPTR_0002s18320	POPTR_0002s18320 (9)	scaffold_2:14282436-14283076(-) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.202313.1.S1_at	A	A1TS	POPTR_0002s18320	POPTR_0002s18320 (9)	scaffold_2:14284261-14284720(-) (10)	NA	Q7GCL7	NAC domain-containing protein 74	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.202314.1.S1_at	A	A1TS	POPTR_0002s18330	POPTR_0002s18330 (11)	scaffold_2:14286193-14286229(-) (11)	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT5G54130.2	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC233657_18.1	Calcium-binding EF-hand; Endonuclease/exonuclease/phosphatase AC233657.1 101749-97143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202314.1.S1_s_at	A	A1TS	POPTR_0002s18330	POPTR_0002s18330 (11)	scaffold_2:14286215-14286399(-) (11)	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT5G54130.2	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC233657_18.1	Calcium-binding EF-hand; Endonuclease/exonuclease/phosphatase AC233657.1 101749-97143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202314.1.S1_x_at	A	A1TS	POPTR_0002s18330	POPTR_0002s18330 (11)	scaffold_2:14286194-14286916(-) (11)	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT5G54130.2	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC233657_18.1	Calcium-binding EF-hand; Endonuclease/exonuclease/phosphatase AC233657.1 101749-97143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202315.1.S1_s_at	A	A2TS	POPTR_0002s18370	POPTR_0002s18370 (11)//POPTR_0002s18390 (11)	scaffold_2:14329518-14330111(-) (11)//scaffold_2:14339216-14339809(-) (11)	NA	Q8VZE4	Pentatricopeptide repeat-containing protein At4g01570	AT4G01570.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g50500.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015060.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202317.1.S1_at	A	A1TS	POPTR_0002s18430	POPTR_0002s18430 (11)	scaffold_2:14362808-14363317(+) (11)	NA	Q9BQ70	Transcription factor 25	AT2G46900.1	"CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink). "	LOC_Os09g33970.1	expressed protein	AC233662_22.1	Protein of unknown function DUF654 AC233662.1 96596-103118 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202318.1.S1_at	A	A1TS	POPTR_0002s18450	POPTR_0002s18450 (11)	scaffold_2:14367837-14369287(-) (11)	NA	Q00719	O-methyltransferase mdmC	AT3G62000.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g05790.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.202319.1.S1_at	A	A1TS	POPTR_0002s18460	POPTR_0002s18460 (11)	scaffold_2:14371012-14371881(+) (11)	NA	Q8W4F1	"Probable plastid-lipid-associated protein 10, chloroplastic"	AT2G46910.1	Plastid-lipid associated protein PAP / fibrillin family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202320.1.S1_at	A	A1TS	POPTR_0002s18520	POPTR_0002s18520 (11)	scaffold_2:14409224-14410641(+) (11)	POPTR_0014s10550 (8)	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202321.1.S1_at	A	A1MS	POPTR_0002s18520	POPTR_0002s18520 (10)	scaffold_2:14414716-14416057(+) (10)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202322.1.S1_at	A	A2TS	POPTR_0002s18520	POPTR_0002s18520 (11)//POPTR_0014s10550 (9)	scaffold_14:7866518-7866589(+) (9)//scaffold_2:14416851-14416938(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202322.1.S1_s_at	A	A1TS	POPTR_0002s18520	POPTR_0002s18520 (11)	scaffold_2:14416926-14417055(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202323.1.S1_at	A	A1TS	POPTR_0002s18530	POPTR_0002s18530 (11)	scaffold_2:14423158-14423592(-) (11)	NA	Q8L5J1	"Mannan endo-1,4-beta-mannosidase 4"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr1g103540.1	"Mannan endo-1,4-beta-mannosidase 4 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202325.1.S1_at	A	A1TS	POPTR_0002s18550	POPTR_0002s18550 (11)	scaffold_2:14438175-14438842(+) (11)	NA	Q9ZSI1	Putative expansin-A17	AT4G01630.1	expansin A17 	LOC_Os02g16809.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202326.1.S1_at	A	A1TS	POPTR_0002s18560	POPTR_0002s18560 (10)	scaffold_2:14444116-14444798(+) (11)	NA	Q9ZSI1	Putative expansin-A17	AT4G01630.1	expansin A17 	LOC_Os02g16809.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202327.1.S1_at	A	A1TS	POPTR_0002s18630	POPTR_0002s18630 (10)	scaffold_2:14500008-14502095(+) (10)	NA	Q29RI0	"Chaperone activity of bc1 complex-like, mitochondrial"	AT4G01660.1	ABC transporter 1 	LOC_Os01g21610.1	"uncharacterized aarF domain-containing protein kinase 4, putative, expressed"	Medtr4g140720.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202328.1.S1_at	A	A1TS	POPTR_0002s18660	POPTR_0002s18660 (11)	scaffold_2:14509087-14509582(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202329.1.S1_at	A	A1TS	POPTR_0002s18670	POPTR_0002s18670 (10)	scaffold_2:14514765-14515406(+) (11)	NA	NA	NA	AT3G62060.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134290.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202331.1.S1_at	A	A1TS	POPTR_0002s18680	POPTR_0002s18680 (11)	scaffold_2:14525412-14526251(-) (11)	NA	NA	NA	AT2G46940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits to 141 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g18220.1	expressed protein	Medtr7g134270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202332.1.S1_at	A	A1TS	POPTR_0002s18710	POPTR_0002s18710 (11)	scaffold_2:14570695-14571069(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202333.1.S1_at	A	A1TS	POPTR_0002s20800	POPTR_0002s20800 (11)	scaffold_2:16959428-16959894(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202334.1.S1_at	A	A1TS	POPTR_0002s20780	POPTR_0002s20780 (11)	scaffold_2:16877596-16879552(-) (11)	NA	NA	NA	AT1G02910.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g25600.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g130350.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202335.1.S1_at	A	A1TS	POPTR_0002s20770	POPTR_0002s20770 (11)	scaffold_2:16867793-16868232(+) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G16320.1	FRIGIDA like 1 	LOC_Os09g07360.1	"frigida, putative, expressed"	Medtr3g077030.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202336.1.S1_at	A	A1TS	POPTR_0002s20730	POPTR_0002s20730 (10)	scaffold_2:16824806-16825762(+) (10)	NA	Q9H3S4	Thiamin pyrophosphokinase 1	AT1G02880.3	thiamin pyrophosphokinase1 	LOC_Os01g70580.1	"thiamin pyrophosphokinase 1, putative, expressed"	Medtr7g130470.1	"Thiamin pyrophosphokinase, catalytic region "	GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009229|thiamin diphosphate biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004788|thiamin diphosphokinase activity	NA
PtpAffx.202339.1.S1_at	A	A1TS	POPTR_0002s20560	POPTR_0002s20560 (11)	scaffold_2:16649531-16650174(+) (11)	NA	Q9VI10	Probable small nuclear ribonucleoprotein Sm D2	AT3G62840.2	Small nuclear ribonucleoprotein family protein 	LOC_Os05g24970.2	"LSM domain containing protein, expressed"	Medtr4g156540.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202341.1.S1_at	A	A1TS	POPTR_0002s20440	POPTR_0002s20440 (11)	scaffold_2:16486088-16486495(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202342.1.S1_at	A	A1TS	POPTR_0002s20430	POPTR_0002s20430 (11)	scaffold_2:16483588-16484630(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202343.1.S1_at	A	A1TS	POPTR_0002s20420	POPTR_0002s20420 (11)	scaffold_2:16482148-16482787(+) (11)	NA	Q39659	Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a	AT3G06860.1	multifunctional protein 2 	LOC_Os01g24680.2	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr8g138540.1	3-hydroxyacyl-CoA dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202344.1.S1_at	A	A1TS	POPTR_0150s00200	POPTR_0150s00200 (11)	scaffold_150:9286-9703(-) (11)	NA	NA	NA	AT4G02340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g15120.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138430.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202346.1.S1_at	A	A2TS	POPTR_0002s20320	POPTR_0002s20320 (11)//POPTR_0002s20330 (11)	scaffold_2:16319094-16319130(-) (11)//scaffold_2:16335546-16335582(-) (11)	NA	P49062	Exopolygalacturonase clone GBGE184	AT1G02790.1	polygalacturonase 4 	LOC_Os06g40880.1	"polygalacturonase, putative, expressed"	Medtr1g108030.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.202347.1.S1_at	A	A1TS	POPTR_0002s20310	POPTR_0002s20310 (11)	scaffold_2:16294991-16295082(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202348.1.S1_at	A	A1TS	POPTR_0002s20300	POPTR_0002s20300 (11)	scaffold_2:16291792-16292363(+) (11)	NA	NA	NA	AT2G47540.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr1g108000.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202350.1.S1_at	A	A1TS	POPTR_0002s20230	POPTR_0002s20230 (11)	scaffold_2:16178265-16180265(+) (11)	NA	Q2YDC9	Programmed cell death protein 2	AT4G02220.1	zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein 	LOC_Os03g18830.2	"programmed cell death protein 2, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005737|cytoplasm
PtpAffx.202351.1.S1_at	A	A1TS	POPTR_0002s20220	POPTR_0002s20220 (11)	scaffold_2:16162488-16162872(-) (11)	NA	NA	NA	AT5G67080.1	mitogen-activated protein kinase kinase kinase 19 	LOC_Os01g50400.1	"STE_MEKK_ste11_MAP3K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017070.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202352.1.S1_at	A	A1TS	POPTR_0002s20210	POPTR_0002s20210 (11)	scaffold_2:16162159-16162204(+) (11)	NA	O81635	Kinesin-4	AT5G27000.1	kinesin 4 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.202353.1.S1_at	A	A1TS	POPTR_0002s20170	POPTR_0002s20170 (11)	scaffold_2:16114609-16115333(-) (11)	NA	NA	NA	AT4G02210.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). 	LOC_Os08g25050.1	"PIF-like orf1, putative, expressed"	Medtr5g022470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202354.1.S1_at	A	A1TS	POPTR_0002s20140	POPTR_0002s20140 (11)	scaffold_2:16090992-16092617(-) (11)	NA	O65359	Syntaxin-41	AT5G26980.2	syntaxin of plants 41 	LOC_Os06g02570.1	"syntaxin, putative, expressed"	Medtr1g100300.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.202355.1.S1_at	A	A1TS	POPTR_0002s20130	POPTR_0002s20130 (11)	scaffold_2:16081330-16081890(-) (11)	NA	Q9SRW9	Cellulose synthase-like protein D5	AT1G02730.1	cellulose synthase-like D5 	LOC_Os12g36890.1	"CSLD4 - cellulose synthase-like family D, expressed"	Medtr7g132520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.202356.1.S1_at	A	A1TS	POPTR_0002s20080	POPTR_0002s20080 (11)	scaffold_2:16007790-16008267(+) (11)	NA	Q9FJ10	GATA transcription factor 16	AT5G49300.1	GATA transcription factor 16 	LOC_Os03g61570.2	expressed protein	Medtr7g138200.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.202358.1.S1_at	A	A1TS	POPTR_0002s20050	POPTR_0002s20050 (11)	scaffold_2:15979175-15980982(-) (11)	NA	NA	NA	AT5G47900.7	Protein of unknown function (DUF1624) 	LOC_Os05g06360.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr1g107540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202359.1.S1_at	A	A1TS	POPTR_0002s20030	POPTR_0002s20030 (11)	scaffold_2:15972836-15973311(+) (11)	NA	Q9SY66	Protein FAR1-RELATED SEQUENCE 11	AT1G10240.1	FAR1-related sequence 11 	LOC_Os04g36590.1	"transposon protein, putative, unclassified, expressed"	Medtr2g038970.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.202360.1.S1_at	A	A1TS	POPTR_0002s20020	POPTR_0002s20020 (10)	scaffold_2:15940084-15940539(-) (10)	NA	Q39265	Zinc finger protein 6	AT1G67030.1	zinc finger protein 6 	LOC_Os06g10470.1	ZOS6-02 - C2H2 zinc finger protein	Medtr2g038950.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.202361.1.S1_at	A	A1TS	POPTR_0002s20010	POPTR_0002s20010 (11)	scaffold_2:15932602-15933037(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g132720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202362.1.S1_at	A	A1TS	POPTR_0002s20000	POPTR_0002s20000 (11)	scaffold_2:15921345-15922515(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202363.1.S1_at	A	A1TS	POPTR_0002s19990	POPTR_0002s19990 (11)	scaffold_2:15906902-15907163(-) (11)	NA	NA	NA	AT5G38700.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g19070.1	"long cell-linked locus protein, putative, expressed"	Medtr1g107490.1	"long cell-linked locus protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202364.1.S1_at	A	A1TS	POPTR_0002s19980	POPTR_0002s19980 (11)	scaffold_2:15903827-15904480(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202365.1.S1_at	A	A1TS	POPTR_0002s19930	POPTR_0002s19930 (10)	scaffold_2:15873867-15875428(+) (10)	NA	NA	NA	AT3G62620.1	sucrose-phosphatase-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202366.1.S1_at	A	A1TS	POPTR_0002s19920	POPTR_0002s19920 (11)	scaffold_2:15864163-15866316(+) (11)	NA	P27898	Myb-related protein P	AT2G47460.1	myb domain protein 12 	LOC_Os01g19970.1	"MYB family transcription factor, putative, expressed"	Medtr7g132730.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202367.1.S1_at	A	A1TS	POPTR_0002s19880	POPTR_0002s19880 (11)	scaffold_2:15814205-15814681(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202369.1.S1_at	A	A1TS	POPTR_0002s19830	POPTR_0002s19830 (11)	scaffold_2:15734252-15737116(+) (11)	NA	Q94KD8	Probable beta-D-xylosidase 2	AT1G02640.1	beta-xylosidase 2 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.202370.1.S1_at	A	A1TS	POPTR_0002s19810	POPTR_0002s19810 (11)	scaffold_2:15714488-15714781(-) (11)	NA	Q93YR9	Auxin response factor 16	AT4G30080.1	auxin response factor 16 	LOC_Os06g47150.4	"auxin response factor 18, putative, expressed"	Medtr1g120890.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.202370.1.S1_x_at	A	A1TS	POPTR_0002s19810	POPTR_0002s19810 (11)	scaffold_2:15714488-15714781(-) (11)	NA	Q93YR9	Auxin response factor 16	AT4G30080.1	auxin response factor 16 	LOC_Os06g47150.4	"auxin response factor 18, putative, expressed"	Medtr1g120890.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.202371.1.S1_s_at	A	A1TS	POPTR_0002s19800	POPTR_0002s19800 (10)	scaffold_2:15711673-15712200(-) (10)	NA	NA	NA	AT4G02090.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 132 Blast hits to 132 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g19260.1	expressed protein	Medtr1g106960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202372.1.S1_at	A	A1TS	POPTR_0002s19790	POPTR_0002s19790 (11)	scaffold_2:15705890-15706180(-) (11)	NA	Q9M7X7	60S ribosomal protein L29-1	AT3G06680.1	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g137850.1	Ribosomal L29e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.202373.1.S1_at	A	A1TS	POPTR_0002s19750	POPTR_0002s19750 (9)	scaffold_2:15683963-15684316(+) (11)	NA	Q9FLC8	Phenylalanine N-hydroxylase	AT5G05260.1	cytochrome p450 79a2 	LOC_Os03g37290.1	"cytochrome P450, putative, expressed"	Medtr8g088330.1	Cecropin; Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202374.1.S1_at	A	A1TS	POPTR_0002s19740	POPTR_0002s19740 (11)	scaffold_2:15676652-15677355(+) (11)	NA	Q4V9Y0	Protein fat-free homolog	AT4G02030.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os03g52770.1	expressed protein	Medtr1g106780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202376.1.S1_at	A	A1TS	POPTR_0002s19700	POPTR_0002s19700 (11)	scaffold_2:15643211-15644317(-) (11)	NA	Q8VZF3	"Probable glutamyl endopeptidase, chloroplastic"	AT2G47390.1	Prolyl oligopeptidase family protein 	LOC_Os03g19410.1	"OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g132980.1	"Peptidase S9, prolyl oligopeptidase active site region "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.202377.1.S1_at	A	A1TS	POPTR_0002s19680	POPTR_0002s19680 (11)	scaffold_2:15617626-15618504(-) (11)	NA	NA	NA	AT3G62390.1	TRICHOME BIREFRINGENCE-LIKE 6 	LOC_Os03g19470.1	"proteins of unknown function domain containing protein, expressed"	Medtr7g133010.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202378.1.S1_at	A	A1TS	POPTR_0002s19660	POPTR_0002s19660 (11)	scaffold_2:15601462-15602009(+) (11)	NA	Q8GXW1	DELLA protein RGL2	AT3G03450.1	RGA-like 2 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g133030.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202379.1.S1_at	A	A1TS	POPTR_0002s19650	POPTR_0002s19650 (9)	scaffold_2:15595017-15595206(+) (11)	NA	P49039	Sucrose synthase	AT1G73370.1	sucrose synthase 6 	LOC_Os02g58480.1	"sucrose synthase, putative, expressed"	Medtr5g084740.1	Sucrose synthase; N-6 Adenine-specific DNA methylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202380.1.S1_s_at	A	A2TS	POPTR_0002s19620	POPTR_0002s19620 (11)//POPTR_0014s11480 (11)	scaffold_14:8523284-8524820(+) (11)//scaffold_2:15568745-15570635(+) (11)	NA	Q9S834	"ATP-dependent Clp protease proteolytic subunit 5, chloroplastic"	AT1G02560.1	nuclear encoded CLP protease 5 	LOC_Os03g19510.1	"OsClp4 - Putative Clp protease homologue, expressed"	Medtr1g106610.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.202381.1.S1_at	A	A1TS	POPTR_0002s19600	POPTR_0002s19600 (11)	scaffold_2:15551925-15552501(+) (11)	NA	NA	NA	AT1G02550.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	NA	NA	NA	NA	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.202382.1.S1_s_at	A	A3TS	POPTR_0002s19560	POPTR_0184s00200 (11)//POPTR_0002s19590 (11)//POPTR_0002s19560 (11)	scaffold_184:4524-4989(-) (11)//scaffold_2:15522945-15523410(+) (11)//scaffold_2:15544707-15545172(+) (11)	NA	NA	NA	AT1G02550.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	NA	NA	Medtr1g106560.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.202383.1.S1_at	A	A1TS	POPTR_0002s19550	POPTR_0002s19550 (11)	scaffold_2:15517267-15518784(+) (11)	NA	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT4G02010.1	Protein kinase superfamily protein 	LOC_Os01g14932.1	"NAK-like ser/thr protein kinase, putative, expressed"	Medtr7g133110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202384.1.S1_at	A	A2TS	POPTR_0002s19540	POPTR_0002s19540 (11)//POPTR_0184s00210 (11)	scaffold_184:46093-46780(+) (11)//scaffold_2:15506442-15507129(-) (11)	NA	O22907	DEAD-box ATP-dependent RNA helicase 24	AT2G47330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g19530.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g133130.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.202384.1.S1_s_at	A	A2TS	POPTR_0002s19540	POPTR_0002s19540 (11)//POPTR_0184s00210 (11)	scaffold_184:46077-46671(+) (11)//scaffold_2:15506551-15507145(-) (11)	NA	O22907	DEAD-box ATP-dependent RNA helicase 24	AT2G47330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g19530.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g133130.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.202385.1.S1_at	A	A1TS	POPTR_0002s19520	POPTR_0002s19520 (11)	scaffold_2:15486286-15486757(-) (11)	NA	Q9FZ24	"Pentatricopeptide repeat-containing protein At1g02370, mitochondrial"	AT1G02370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g25410.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g106520.1	Asparaginase/glutaminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202386.1.S1_at	A	A1TS	POPTR_0002s19510	POPTR_0002s19510 (11)	scaffold_2:15484082-15485606(+) (11)	NA	Q94A16	"Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial"	AT2G47320.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202387.1.S1_at	A	A1TS	POPTR_0002s19490	POPTR_0002s19490 (11)	scaffold_2:15477975-15479848(+) (11)	NA	Q99575	Ribonucleases P/MRP protein subunit POP1	AT2G47300.2	ribonuclease Ps 	LOC_Os11g45250.1	"ribonucleases P/MRP protein subunit POP1 containing protein, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001682|tRNA 5'-leader removal	GO:0004526|ribonuclease P activity	NA
PtpAffx.202388.1.S1_s_at	A	A1TS	POPTR_0002s19490	POPTR_0002s19490 (11)	scaffold_2:15475844-15476379(+) (11)	NA	Q99575	Ribonucleases P/MRP protein subunit POP1	AT2G47300.2	ribonuclease Ps 	LOC_Os11g45250.1	"ribonucleases P/MRP protein subunit POP1 containing protein, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001682|tRNA 5'-leader removal	GO:0004526|ribonuclease P activity	NA
PtpAffx.202389.1.S1_at	A	A1TS	POPTR_0002s19480	POPTR_0002s19480 (10)	scaffold_2:15463793-15464811(-) (11)	NA	Q6GQT9	Nodal modulator 1	AT3G62360.1	Carbohydrate-binding-like fold 	LOC_Os01g19470.1	"nodal modulator 1 precursor, putative, expressed"	Medtr7g133160.1	Carboxypeptidase regulatory region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202390.1.S1_at	A	A1TS	POPTR_0002s19420	POPTR_0002s19420 (11)	scaffold_2:15377555-15377647(-) (11)	NA	O22901	Transcription factor bHLH151	AT2G47270.1	sequence-specific DNA binding transcription factors;transcription regulators 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202390.1.S1_x_at	A	A1TS	POPTR_0002s19420	POPTR_0002s19420 (11)	scaffold_2:15377531-15377681(-) (11)	NA	O22901	Transcription factor bHLH151	AT2G47270.1	sequence-specific DNA binding transcription factors;transcription regulators 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202391.1.S1_at	A	A1TS	POPTR_0002s19410	POPTR_0002s19410 (11)	scaffold_2:15364152-15364447(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202392.1.S1_at	A	A1TS	POPTR_0002s19400	POPTR_0002s19400 (11)	scaffold_2:15358366-15358659(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202393.1.S1_at	A	A1TS	POPTR_0002s19360	POPTR_0002s19360 (11)	scaffold_2:15321873-15322394(-) (11)	NA	NA	NA	AT1G02380.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g19410.2	expressed protein	Medtr1g106390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202394.1.S1_at	A	A1TS	POPTR_0002s19350	POPTR_0002s19350 (11)	scaffold_2:15308967-15309487(-) (11)	NA	Q9SYJ2	Probable glycerol-3-phosphate acyltransferase 3	AT4G01950.1	glycerol-3-phosphate acyltransferase 3 	LOC_Os11g45400.1	"glycerol-3-phosphate acyltransferase, putative, expressed"	Medtr1g106370.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.202395.1.S1_at	A	A1TS	POPTR_0002s19330	POPTR_0002s19330 (11)	scaffold_2:15294993-15295923(+) (11)	NA	O22898	Long chain acyl-CoA synthetase 1	AT2G47240.2	AMP-dependent synthetase and ligase family protein 	LOC_Os05g04170.4	"AMP-binding enzyme, putative, expressed"	Medtr7g133290.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.202396.1.S1_at	A	A1TS	POPTR_0002s19300	POPTR_0002s19300 (11)	scaffold_2:15265654-15266019(+) (11)	NA	NA	NA	AT1G26540.1	Agenet domain-containing protein 	LOC_Os11g19730.1	expressed protein	Medtr2g037560.1	SH3; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.202397.1.S1_at	A	A1TS	POPTR_0002s19270	POPTR_0002s19270 (11)	scaffold_2:15242902-15243320(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202398.1.S1_at	A	A1TS	POPTR_0002s19260	POPTR_0002s19260 (11)	scaffold_2:15214156-15216773(-) (11)	NA	Q9XHM5	Gibberellin 2-beta-dioxygenase 2	AT1G02400.1	gibberellin 2-oxidase 6 	LOC_Os05g06670.1	"gibberellin 2-oxidase, putative, expressed"	Medtr1g106260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.202399.1.S1_s_at	A	A1TS	POPTR_0002s19240	POPTR_0002s19240 (10)	scaffold_2:15164818-15164999(+) (11)	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os01g22870.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
PtpAffx.202399.1.S1_x_at	A	A1TS	POPTR_0002s19240	POPTR_0002s19240 (10)	scaffold_2:15164802-15165120(+) (11)	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os01g22870.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
PtpAffx.202400.1.S1_at	A	A1TS	POPTR_0002s19220	POPTR_0002s19220 (11)	scaffold_2:15141450-15141930(-) (11)	NA	P83326	Pectinesterase inhibitor	AT2G31430.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	NA	NA	Medtr8g009110.1	"Putative invertase inhibitor precursor, "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.202401.1.S1_s_at	A	A1TS	POPTR_0002s19140	POPTR_0002s19140 (11)	scaffold_2:15069357-15069683(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202402.1.S1_at	A	A1TS	POPTR_0002s19120	POPTR_0002s19120 (11)	scaffold_2:15040441-15041249(+) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G02460.1	Pectin lyase-like superfamily protein 	LOC_Os05g20020.1	"polygalacturonase, putative, expressed"	Medtr1g106120.1	"Ribosome-binding factor A; Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.202403.1.S1_at	A	A1TS	POPTR_0002s19100	POPTR_0002s19100 (9)	scaffold_2:15007529-15007658(-) (9)	NA	Q3EAF9	Probable protein phosphatase 2C 49	AT3G62260.1	Protein phosphatase 2C family protein 	LOC_Os05g04360.1	"protein phosphatase 2C, putative, expressed"	Medtr1g106080.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202403.1.S1_x_at	A	A1TS	POPTR_0002s19100	POPTR_0002s19100 (10)	scaffold_2:15007165-15007733(-) (10)	NA	Q3EAF9	Probable protein phosphatase 2C 49	AT3G62260.1	Protein phosphatase 2C family protein 	LOC_Os05g04360.1	"protein phosphatase 2C, putative, expressed"	Medtr1g106080.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202404.1.S1_at	A	A1TS	POPTR_0002s19040	POPTR_0002s19040 (11)	scaffold_2:14942800-14943386(+) (11)	NA	Q76PD2	LIM domain and RING finger protein C1223.01	AT3G62240.1	RING/U-box superfamily protein 	LOC_Os05g19970.1	"ZOS5-06 - C2H2 zinc finger protein, expressed"	Medtr7g133640.1	"Zinc finger, RING-type; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.202405.1.S1_at	A	A1TS	POPTR_0002s19020	POPTR_0002s19020 (11)	scaffold_2:14922818-14923924(-) (11)	NA	Q5XFW6	WD repeat-containing protein 6	AT4G01860.2	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g02110.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g133690.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202406.1.S1_at	A	A1TS	POPTR_0002s18990	POPTR_0002s18990 (11)	scaffold_2:14875604-14876604(-) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.202408.1.S1_at	A	A1TS	POPTR_0002s18970	POPTR_0002s18970 (11)	scaffold_2:14859068-14859303(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.202409.1.S1_at	A	A1TS	POPTR_0002s18940	POPTR_0002s18940 (11)	scaffold_2:14824338-14824491(+) (11)	NA	NA	NA	AT3G62190.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g44310.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g133860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.202411.1.S1_at	A	A1TS	POPTR_0002s18920	POPTR_0002s18920 (9)	scaffold_2:14805007-14805122(-) (11)	NA	NA	NA	AT1G75250.1	RAD-like 6 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr1g105920.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202412.1.S1_at	A	A1TS	POPTR_0002s18900	POPTR_0002s18900 (11)	scaffold_2:14801081-14801139(+) (11)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os10g01550.2	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.202413.1.S1_at	A	A1MS	POPTR_0002s18880	POPTR_0002s18880 (9)	scaffold_2:14792891-14794883(+) (9)	NA	NA	NA	AT2G47010.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19000.1	expressed protein	Medtr1g105900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202414.1.S1_at	A	A1TS	POPTR_0002s18870	POPTR_0002s18870 (11)	scaffold_2:14785577-14787185(+) (11)	NA	Q9S6Z8	"Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic"	AT4G01840.1	Ca2+ activated outward rectifying K+ channel 5 	LOC_Os09g12790.1	"potassium channel protein, putative, expressed"	Medtr7g134030.1	Ion transport 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202415.1.S1_at	A	A1TS	POPTR_0002s18860	POPTR_0002s18860 (11)	scaffold_2:14764900-14765367(-) (11)	NA	O80725	ABC transporter B family member 4	AT2G47000.1	ATP binding cassette subfamily B4 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.202418.1.S1_at	A	A1TS	POPTR_0002s18850	POPTR_0002s18850 (11)	scaffold_2:14740368-14740638(-) (11)	NA	Q9FWX7	ABC transporter B family member 11	AT1G02520.1	P-glycoprotein 11 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.202420.1.S1_at	A	A1TS	POPTR_0002s18790	POPTR_0002s18790 (11)	scaffold_2:14678119-14678760(+) (11)	NA	Q9M115	Probable S-acyltransferase At4g01730	AT4G01730.1	DHHC-type zinc finger family protein 	LOC_Os12g16210.1	"zinc finger family protein, putative, expressed"	Medtr1g105750.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.202421.1.S1_at	A	A1MS	POPTR_0002s18780	POPTR_0002s18780 (11)	scaffold_2:14673404-14673950(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g19594.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202422.1.S1_at	A	A1TS	POPTR_0002s18770	POPTR_0002s18770 (11)	scaffold_2:14652525-14653093(+) (11)	NA	Q9ZSI7	Probable WRKY transcription factor 47	AT4G01720.1	WRKY family transcription factor 	LOC_Os01g18584.1	"OsWRKY9 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g134120.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202423.1.S1_at	A	A1TS	POPTR_0002s18740	POPTR_0002s18740 (11)	scaffold_2:14605090-14606392(+) (11)	NA	P55826	"Protoporphyrinogen oxidase, chloroplastic"	AT4G01690.1	Flavin containing amine oxidoreductase family 	LOC_Os01g18320.1	"protoporphyrinogen oxidase, chloroplast precursor, putative, expressed"	Medtr8g142180.1	Protoporphyrinogen oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.202424.1.S1_at	A	A1TS	POPTR_0002s18730	POPTR_0002s18730 (11)	scaffold_2:14593290-14593969(-) (11)	NA	NA	NA	AT2G46980.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os10g26560.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202426.1.S1_at	A	A1MS	POPTR_0002s22850	POPTR_0002s22850 (10)	scaffold_2:19887597-19888215(+) (10)	NA	P93051	Sugar transporter ERD6-like 7	AT2G48020.1	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr8g139840.1	General substrate transporter; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202427.1.S1_at	A	A1TS	POPTR_0002s22830	POPTR_0002s22830 (11)	scaffold_2:19841133-19841514(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	GO:0006810|transport	GO:0003676|nucleic acid binding	NA
PtpAffx.202428.1.S1_at	A	A1TS	POPTR_0002s22830	POPTR_0002s22830 (11)	scaffold_2:19838686-19838959(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	GO:0006810|transport	GO:0003676|nucleic acid binding	NA
PtpAffx.202429.1.S1_at	A	A1TS	POPTR_0002s22820	POPTR_0002s22820 (11)	scaffold_2:19784956-19785539(-) (11)	NA	Q02357	Ankyrin-1	AT2G03430.1	Ankyrin repeat family protein 	LOC_Os03g45290.1	"ankyrin repeat domain-containing protein 50, putative, expressed"	Medtr1g110930.1	Major sperm protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202430.1.S1_at	A	A1TS	POPTR_0002s22800	POPTR_0002s22800 (11)	scaffold_2:19745313-19746552(+) (11)	NA	NA	NA	AT4G03090.1	sequence-specific DNA binding;sequence-specific DNA binding transcription factors 	LOC_Os05g09630.1	"homeobox domain containing protein, expressed"	Medtr2g114320.1	Homeobox 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202430.1.S1_s_at	A	A1TS	POPTR_0002s22800	POPTR_0002s22800 (11)	scaffold_2:19745461-19747048(+) (11)	NA	NA	NA	AT4G03090.1	sequence-specific DNA binding;sequence-specific DNA binding transcription factors 	LOC_Os05g09630.1	"homeobox domain containing protein, expressed"	Medtr2g114320.1	Homeobox 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202431.1.S1_at	A	A1MS	POPTR_0002s22790	POPTR_0002s22790 (11)	scaffold_2:19703834-19704046(-) (11)	NA	Q5F3D7	U3 small nucleolar RNA-associated protein 15 homolog	AT2G47990.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g12320.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g111180.1	"U3 small nucleolar RNA-associated protein 15 homolog, related "	GO:0006364|rRNA processing||GO:0044260|cellular macromolecule metabolic process	NA	GO:0005730|nucleolus
PtpAffx.202432.1.S1_at	A	A1TS	POPTR_0002s22770	POPTR_0002s22770 (11)	scaffold_2:19692308-19692448(+) (11)	NA	O82264	NPL4-like protein 2	AT2G47970.1	Nuclear pore localisation protein NPL4 	LOC_Os01g27990.1	"NPL4, putative, expressed"	AC235488_3.1	Ubiquitin; NPL4 AC235488.1 4598-10630 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202433.1.S1_s_at	A	A1TS	POPTR_0002s22750	POPTR_0002s22750 (11)	scaffold_2:19664079-19664458(-) (11)	NA	NA	NA	AT4G03100.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g34840.1	"rhoGAP domain containing protein, expressed"	AC235488_25.1	PAK-box/P21-Rho-binding; RhoGAP AC235488.1 117094-119868 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202434.1.S1_at	A	A1TS	POPTR_0002s22740	POPTR_0002s22740 (10)	scaffold_2:19659458-19659788(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202435.1.S1_at	A	A1TS	POPTR_0002s22720	POPTR_0002s22720 (11)	scaffold_2:19605187-19605942(+) (11)	NA	P29194	Phosphoenolpyruvate carboxylase 2	AT1G53310.3	phosphoenolpyruvate carboxylase 1 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g111660.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.202437.1.S1_at	A	A1TS	POPTR_0002s22670	POPTR_0002s22670 (11)	scaffold_2:19496463-19497194(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G58640.2	Mitogen activated protein kinase kinase kinase-related 	LOC_Os01g48330.1	"protein kinase domain containing protein, expressed"	Medtr4g109800.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202438.1.S1_at	A	A1TS	POPTR_0002s22650	POPTR_0002s22650 (10)	scaffold_2:19479344-19481181(+) (10)	NA	NA	NA	AT3G58640.2	Mitogen activated protein kinase kinase kinase-related 	LOC_Os01g48330.1	"protein kinase domain containing protein, expressed"	Medtr4g109800.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202439.1.S1_at	A	A1TS	POPTR_0002s22630	POPTR_0002s22630 (9)	scaffold_2:19427428-19427510(+) (9)	NA	Q38959	"Pentatricopeptide repeat-containing protein At3g26630, chloroplastic"	AT3G26630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g36350.1	"pentatricopeptide, putative, expressed"	Medtr7g099640.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202439.1.S1_s_at	A	A1TS	POPTR_0002s22630	POPTR_0002s22630 (11)	scaffold_2:19426909-19427347(+) (11)	NA	Q38959	"Pentatricopeptide repeat-containing protein At3g26630, chloroplastic"	AT3G26630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g36350.1	"pentatricopeptide, putative, expressed"	Medtr7g099640.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202440.1.S1_at	A	A1TS	POPTR_0002s22590	POPTR_0002s22590 (11)	scaffold_2:19359144-19359664(+) (11)	NA	Q3E6Q1	Pentatricopeptide repeat-containing protein At1g11290	AT1G11290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g02200.1	"pentatricopeptide, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202441.1.S1_at	A	A1TS	POPTR_0002s22550	POPTR_0002s22550 (11)	scaffold_2:19316987-19317385(+) (11)	NA	NA	NA	AT3G63095.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g46210.1	"LTPL2 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	AC233676_41.1	hypothetical protein AC233676.2 159341-159811 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202442.1.S1_at	A	A1TS	POPTR_0002s22540	POPTR_0002s22540 (11)	scaffold_2:19289570-19289866(+) (11)	NA	NA	NA	AT3G63090.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os01g18880.2	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	AC233676_39.1	"Protein of unknown function DUF860, plant AC233676.2 156194-157369 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202443.1.S1_at	A	A1TS	POPTR_0002s22530	POPTR_0002s22530 (11)	scaffold_2:19285370-19285530(-) (11)	NA	Q8L735	"Isoamylase 2, chloroplastic"	AT1G03310.1	debranching enzyme 1 	LOC_Os05g32710.1	"Alpha amylase, catalytic domain containing protein, expressed"	Medtr4g160980.1	"Alpha amylase, catalytic region; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.202444.1.S1_at	A	A1MS	POPTR_0002s22510	POPTR_0002s22510 (9)	scaffold_2:19257677-19258101(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g37554.1	"retrotransposon protein, putative, Ty1-copia subclass"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202445.1.S1_at	A	A1TS	POPTR_0002s22500	POPTR_0002s22500 (11)	scaffold_2:19252552-19253011(+) (11)	NA	NA	NA	AT2G48110.1	reduced epidermal fluorescence 4 	LOC_Os07g11000.1	"structural constituent of ribosome, putative, expressed"	Medtr2g026520.1	"REF4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202446.1.S1_at	A	A1TS	POPTR_0002s22490	POPTR_0002s22490 (11)	scaffold_2:19236178-19238174(+) (11)	NA	Q6FQA0	RNA exonuclease 4	AT3G27970.1	Exonuclease family protein 	LOC_Os02g47920.1	ZOS2-16 - C2H2 zinc finger protein	Medtr2g121500.1	"Zinc finger, C2H2-type; Polynucleotidyl transferase, Ribonuclease H fold "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.202447.1.S1_at	A	A2TS	POPTR_0002s22450	POPTR_0002s22450 (11)//POPTR_0431s00200 (11)	scaffold_2:19200667-19201278(-) (11)//scaffold_431:4217-4828(-) (11)	NA	Q3ECP6	GDSL esterase/lipase At1g54790	AT1G54790.3	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os05g33270.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g139630.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.202449.1.S1_at	A	A1TS	POPTR_0002s22420	POPTR_0002s22420 (11)	scaffold_2:19127666-19128457(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202450.1.S1_at	A	A1TS	POPTR_0002s22380	POPTR_0002s22380 (11)	scaffold_2:19084976-19085282(-) (11)	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202451.1.S1_at	A	A1TS	POPTR_0002s22350	POPTR_0002s22350 (11)	scaffold_2:19071100-19071440(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os04g46300.1	"disease resistance protein RPM1, putative, expressed"	Medtr5g028060.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.202453.1.S1_at	A	A1TS	POPTR_0002s22310	POPTR_0002s22310 (11)	scaffold_2:19018523-19019039(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g081850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202454.1.S1_at	A	A1TS	POPTR_0002s22280	POPTR_0002s22280 (9)	scaffold_2:18982923-18983525(+) (10)	NA	NA	NA	AT2G04039.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	NA	NA	AC233651_18.1	hypothetical protein AC233651.1 59417-62108 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202455.1.S1_s_at	A	A4TS	POPTR_0001s18910	POPTR_0002s17090 (11)//POPTR_0002s22270 (11)//POPTR_0001s18910 (11)//POPTR_0011s11740 (11)	scaffold_1:16088819-16088881(+) (11)//scaffold_11:14525098-14525160(+) (11)//scaffold_15:5278233-5278295(+) (11)//scaffold_2:12869052-12869114(+) (11)//scaffold_2:18978935-18978997(-) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202456.1.S1_at	A	A1TS	POPTR_0002s22240	POPTR_0002s22240 (11)	scaffold_2:18926784-18927407(+) (11)	NA	Q9SJ41	Zinc finger CCCH domain-containing protein 18	AT2G05160.1	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os08g03310.5	"zinc finger family protein, putative, expressed"	Medtr5g102170.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202457.1.S1_at	A	A1TS	POPTR_0426s00200	POPTR_0426s00200 (11)	scaffold_426:13606-14018(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202458.1.S1_at	A	A1TS	POPTR_0002s22180	POPTR_0002s22180 (11)	scaffold_2:18867976-18868498(+) (11)	NA	Q93WV0	Probable WRKY transcription factor 20	AT2G04880.2	zinc-dependent activator protein-1 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g101900.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202458.1.S1_s_at	A	A1TS	POPTR_0002s22180	POPTR_0002s22180 (11)	scaffold_2:18867830-18868480(+) (11)	NA	Q93WV0	Probable WRKY transcription factor 20	AT2G04880.2	zinc-dependent activator protein-1 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g101900.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202459.1.S1_at	A	A1TS	POPTR_0002s22150	POPTR_0002s22150 (11)	scaffold_2:18845898-18846468(-) (11)	NA	Q96DF8	Protein DGCR14	AT3G07790.1	DGCR14-related 	LOC_Os06g30710.3	"DGCR14, putative, expressed"	Medtr5g105210.1	"Protein DGCR14 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202460.1.S1_at	A	A1TS	POPTR_0002s22140	POPTR_0002s22140 (11)	scaffold_2:18840757-18841393(+) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os07g32412.2	"transposon protein, putative, unclassified, expressed"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202460.1.S1_s_at	A	A2TS	POPTR_0002s22140	POPTR_0002s22140 (11)//POPTR_0014s16180 (11)	scaffold_14:12293312-12294048(+) (11)//scaffold_2:18840556-18841294(+) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os07g32412.2	"transposon protein, putative, unclassified, expressed"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202461.1.S1_at	A	A1TS	POPTR_0002s22130	POPTR_0002s22130 (11)	scaffold_2:18833743-18834052(+) (11)	NA	O81263	Thymidine kinase	AT3G07800.1	Thymidine kinase 	LOC_Os03g02200.2	"thymidine kinase, putative, expressed"	Medtr3g106020.1	Thymidine kinase 	NA	GO:0004797|thymidine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202461.1.S1_s_at	A	A1TS	POPTR_0002s22130	POPTR_0002s22130 (11)	scaffold_2:18833790-18834176(+) (10)//scaffold_280:2624-2991(-) (11)	NA	O81263	Thymidine kinase	AT3G07800.1	Thymidine kinase 	LOC_Os03g02200.2	"thymidine kinase, putative, expressed"	Medtr3g106020.1	Thymidine kinase 	NA	GO:0004797|thymidine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202462.1.S1_at	A	A1TS	POPTR_0002s22120	POPTR_0002s22120 (11)	scaffold_2:18818406-18819005(-) (11)	NA	Q98SJ2	DAZ-associated protein 1	AT3G07810.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g105300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202462.1.S1_x_at	A	A1TS	POPTR_0002s22120	POPTR_0002s22120 (11)	scaffold_2:18818406-18819005(-) (11)	NA	Q98SJ2	DAZ-associated protein 1	AT3G07810.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g105300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202463.1.S1_at	A	A1TS	POPTR_0002s22110	POPTR_0002s22110 (11)	scaffold_2:18813692-18813948(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202464.1.S1_at	A	A1TS	POPTR_0002s22080	POPTR_0002s22080 (11)	scaffold_2:18786631-18790100(+) (11)	NA	Q9FGK3	Putative MO25-like protein At5g47540	AT5G47540.1	Mo25 family protein 	LOC_Os07g39630.1	"calcium-binding protein, putative, expressed"	Medtr2g030130.1	Mo25-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202465.1.S1_at	A	A1TS	POPTR_0002s22030	POPTR_0002s22030 (11)	scaffold_2:18691399-18692443(-) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os02g48730.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr3g106340.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
PtpAffx.202466.1.S1_s_at	A	A1TS	POPTR_0002s22010	POPTR_0002s22010 (11)	scaffold_2:18670417-18670605(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g42890.1	"DNA binding protein, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202467.1.S1_s_at	A	A1TS	POPTR_0013s11680	POPTR_0013s11680 (11)	scaffold_13:12349494-12349665(-) (11)//scaffold_2:18662939-18663107(+) (11)	NA	Q43260	Glutamate dehydrogenase	AT3G03910.1	glutamate dehydrogenase 3 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202468.1.S1_at	A	A1TS	POPTR_0002s21980	POPTR_0002s21980 (11)	scaffold_2:18624613-18624974(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202470.1.S1_at	A	A1TS	POPTR_0002s21840	POPTR_0002s21840 (11)	scaffold_2:18537846-18539448(+) (11)	NA	Q8L3X9	"3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial"	AT2G04540.1	Beta-ketoacyl synthase 	LOC_Os02g10320.1	"3-oxoacyl-synthase, putative, expressed"	Medtr8g132860.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202472.1.S1_at	A	A1TS	POPTR_0002s21800	POPTR_0002s21800 (11)	scaffold_2:18428364-18428940(-) (11)	NA	O48626	Centromere/kinetochore protein zw10 homolog	AT2G32900.1	"centromere/kinetochore protein, putative (ZW10) "	LOC_Os11g34310.1	"centromere/kinetochore protein zw10, putative, expressed"	Medtr5g092190.1	Centromerekinetochore Zw10 	GO:0007067|mitosis	NA	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.202474.1.S1_at	A	A1TS	POPTR_0002s21730	POPTR_0002s21730 (11)	scaffold_2:18297477-18300247(+) (11)	NA	NA	NA	AT2G31340.1	embryo defective 1381 	LOC_Os09g12500.2	"EMB1381, putative, expressed"	Medtr3g109710.1	"EMB1381, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202476.1.S1_at	A	A1TS	POPTR_0002s21710	POPTR_0002s21710 (11)	scaffold_2:18261060-18261160(+) (11)	NA	Q9ZVN6	Clathrin coat assembly protein AP180	AT1G05020.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr3g109770.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.202476.1.S1_s_at	A	A1TS	POPTR_0002s21710	POPTR_0002s21710 (11)	scaffold_2:18260928-18261432(+) (11)	NA	Q9ZVN6	Clathrin coat assembly protein AP180	AT1G05020.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr3g109770.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.202477.1.S1_at	A	A1TS	POPTR_0002s21700	POPTR_0002s21700 (11)	scaffold_2:18255597-18255724(+) (11)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.202479.1.S1_at	A	A1TS	POPTR_0002s21660	POPTR_0002s21660 (11)	scaffold_2:18213462-18213688(+) (11)	NA	NA	NA	AT2G32980.1	unknown protein; Has 158 Blast hits to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os08g10410.1	expressed protein	Medtr2g005540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202480.1.S1_at	A	A1TS	POPTR_0002s21650	POPTR_0002s21650 (11)	scaffold_2:18193114-18193708(-) (11)	POPTR_0014s15590 (6)	O48766	Endoglucanase 11	AT2G32990.1	glycosyl hydrolase 9B8 	LOC_Os02g50490.1	"endoglucanase, putative, expressed"	Medtr3g110130.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.202481.1.S1_s_at	A	A1TS	POPTR_0002s21640	POPTR_0002s21640 (11)	scaffold_2:18164072-18164491(-) (11)	NA	O48766	Endoglucanase 11	AT2G32990.1	glycosyl hydrolase 9B8 	LOC_Os02g50490.1	"endoglucanase, putative, expressed"	Medtr5g093090.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202483.1.S1_at	A	A1TS	POPTR_0002s21610	POPTR_0002s21610 (11)	scaffold_2:18138677-18139455(-) (11)	NA	NA	NA	AT3G08000.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	NA	NA	Medtr3g110200.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202484.1.S1_at	A	A1TS	POPTR_0002s21560	POPTR_0002s21560 (11)	scaffold_2:18087035-18087450(+) (11)	NA	Q7SY29	Sugar phosphate exchanger 2	AT3G47420.1	phosphate starvation-induced gene 3 	LOC_Os04g46880.2	"transporter, major facilitator family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202485.1.S1_at	A	A1TS	POPTR_0002s21490	POPTR_0002s21490 (11)	scaffold_2:17987293-17989800(-) (11)	NA	Q69KJ0	Ribonuclease 3-like protein 3	AT4G15417.1	RNAse II-like 1 	LOC_Os06g25250.1	"endoribonuclease Dicer, putative, expressed"	Medtr3g110470.1	"Ribonuclease III, bacterial "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.202486.1.S1_at	A	A1TS	POPTR_0002s21480	POPTR_0002s21480 (11)	scaffold_2:17976876-17977850(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT3G21620.1	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.202487.1.S1_at	A	A1TS	POPTR_0002s21470	POPTR_0002s21470 (11)	scaffold_2:17967410-17970104(-) (11)	NA	O32107	Uncharacterized membrane protein yuiD	AT3G21610.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os01g67560.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202488.1.S1_at	A	A1TS	POPTR_0002s21460	POPTR_0002s21460 (9)	scaffold_2:17962490-17964002(-) (9)	POPTR_0715s00210 (7)	NA	NA	AT1G11940.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os05g07790.1	"DNA binding protein, putative, expressed"	Medtr4g143290.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.20249.1.S1_s_at	A	A1TS	POPTR_0006s29050	POPTR_0006s29050 (11)	scaffold_6:26532358-26533051(-) (11)	NA	Q8RWG1	"Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic"	AT4G31390.1	Protein kinase superfamily protein 	LOC_Os11g11000.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202490.1.S1_at	A	A1TS	POPTR_0002s21420	POPTR_0002s21420 (11)	scaffold_2:17906636-17907056(+) (11)	NA	Q339N5	Cellulose synthase-like protein H1	AT2G32540.1	cellulose synthase-like B4 	LOC_Os10g20090.1	"CSLH1 - cellulose synthase-like family H, expressed"	Medtr2g104470.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.202492.1.S1_at	A	A1TS	POPTR_0002s21390	POPTR_0002s21390 (11)	scaffold_2:17836073-17836249(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202493.1.S1_at	A	A1TS	POPTR_0002s21380	POPTR_0002s21380 (9)	scaffold_2:17817322-17818124(-) (11)	NA	NA	NA	AT1G62280.1	SLAC1 homologue 1 	LOC_Os05g18670.1	"C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed"	Medtr8g147090.1	C4-dicarboxylate transporter/malic acid transport protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.202494.1.S1_s_at	A	A1TS	POPTR_0002s21370	POPTR_0002s21370 (11)	scaffold_2:17805222-17805481(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202495.1.S1_at	A	A1TS	POPTR_0002s21360	POPTR_0002s21360 (11)	scaffold_2:17792829-17793366(+) (11)	NA	NA	NA	AT2G32500.1	Stress responsive alpha-beta barrel domain protein 	LOC_Os03g02020.2	"stress responsive A/B Barrel domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202496.1.S1_at	A	A1TS	POPTR_0002s21350	POPTR_0002s21350 (11)	scaffold_2:17788353-17788669(+) (11)	NA	Q54R82	Mitogen-activated protein kinase kinase kinase A	AT5G55090.1	mitogen-activated protein kinase kinase kinase 15 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g064870.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202497.1.S1_at	A	A1TS	POPTR_0002s21330	POPTR_0002s21330 (11)	scaffold_2:17765981-17766507(+) (11)	NA	Q9C519	WRKY transcription factor 6	AT1G62300.1	WRKY family transcription factor 	LOC_Os01g14440.1	"OsWRKY1v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr2g104410.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202498.1.S1_at	A	A1TS	POPTR_0002s21300	POPTR_0002s21300 (11)	scaffold_2:17727714-17728405(-) (11)	NA	Q0JIC2	Transcription factor GAMYB	AT2G32460.1	myb domain protein 101 	LOC_Os01g59660.2	"MYB family transcription factor, putative, expressed"	Medtr2g104300.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202499.1.S1_at	A	A1TS	POPTR_0012s06300	POPTR_0012s06300 (11)	scaffold_12:6620049-6620885(+) (11)	NA	Q10146	Exosome complex exonuclease rrp6	AT2G32415.1	"Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain "	LOC_Os07g32890.1	"3'-5' exonuclease, putative, expressed"	Medtr4g062390.1	HRDC 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.2025.1.S1_a_at	A	A2TS	POPTR_0001s30400	POPTR_0001s30400 (11)//POPTR_0009s09420 (9)	scaffold_1:28873474-28874213(-) (11)//scaffold_9:8347189-8347878(-) (9)	NA	P16924	Prolyl 4-hydroxylase subunit alpha-1	AT4G33910.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g55380.1	"oxidoreductase, putative, expressed"	Medtr5g016080.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.2025.1.S1_at	A	A1TS	POPTR_0009s09420	POPTR_0009s09420 (10)	scaffold_9:8346312-8347802(-) (10)	NA	P16924	Prolyl 4-hydroxylase subunit alpha-1	AT4G33910.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g55380.1	"oxidoreductase, putative, expressed"	Medtr5g016080.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.2025.2.A1_at	A	A1TS	POPTR_0001s30400	POPTR_0001s30400 (11)	scaffold_1:28872677-28875617(-) (11)	NA	P16924	Prolyl 4-hydroxylase subunit alpha-1	AT4G33910.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g55380.1	"oxidoreductase, putative, expressed"	Medtr5g016080.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.20250.1.S1_at	A	A1TS	POPTR_0010s01540	POPTR_0010s01540 (11)	scaffold_10:1745116-1745631(+) (11)	NA	NA	NA	AT5G49120.1	Protein of unknown function (DUF581) 	LOC_Os02g37970.1	"DUF581 domain containing protein, expressed"	Medtr8g138510.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202500.1.S1_at	A	A1TS	POPTR_0012s06300	POPTR_0012s06300 (11)	scaffold_12:6626548-6626818(+) (11)	NA	Q10146	Exosome complex exonuclease rrp6	AT2G32415.1	"Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain "	LOC_Os07g32890.1	"3'-5' exonuclease, putative, expressed"	Medtr4g062390.1	HRDC 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.202502.1.S1_at	A	A1TS	POPTR_0012s06330	POPTR_0012s06330 (11)	scaffold_12:6665684-6666082(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g062300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202503.1.S1_at	A	A1TS	POPTR_0002s23010	POPTR_0002s23010 (10)	scaffold_12:6699798-6699836(+) (11)//scaffold_2:20336364-20336402(+) (10)//scaffold_2:20354678-20354716(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202503.1.S1_s_at	A	A2TS	POPTR_0002s23010	POPTR_0002s23020 (11)//POPTR_0002s23010 (11)	scaffold_12:6699727-6700068(+) (11)//scaffold_2:20336293-20336634(+) (11)//scaffold_2:20344053-20344394(+) (11)//scaffold_2:20354607-20354948(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202504.1.S1_a_at	A	A1TS	POPTR_0002s23040	POPTR_0002s23040 (11)	scaffold_2:20386011-20386049(+) (11)//scaffold_2:20386061-20386099(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202504.1.S1_at	A	A1TS	POPTR_0002s23040	POPTR_0002s23040 (11)	scaffold_2:20385818-20386426(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202505.1.S1_at	A	A1TS	POPTR_0002s23090	POPTR_0002s23090 (11)	scaffold_2:20514196-20514654(+) (11)	NA	NA	NA	AT3G21710.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g34020.1	expressed protein	Medtr2g103820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202506.1.S1_at	A	A1TS	POPTR_0002s23100	POPTR_0002s23100 (11)	scaffold_2:20536939-20537440(-) (11)	NA	NA	NA	AT2G46150.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os07g34050.1	harpin-induced protein 1 domain containing protein	Medtr2g103800.1	"Harpin-induced 1, related "	GO:0009269|response to desiccation	NA	NA
PtpAffx.202507.1.S1_at	A	A1TS	POPTR_0002s23110	POPTR_0002s23110 (11)	scaffold_2:20543842-20544401(+) (11)	POPTR_0004s04200 (8)	NA	NA	AT1G65070.1	"DNA mismatch repair protein MutS, type 2 "	LOC_Os04g58410.3	"smr domain containing protein, expressed"	AC233659_25.1	"DNA mismatch repair MutS family protein, related AC233659.1 105343-104826 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202508.1.S1_at	A	A1TS	POPTR_0002s23120	POPTR_0002s23120 (11)	scaffold_2:20553196-20556334(+) (11)	NA	Q5T1Q4	Solute carrier family 35 member F1	AT3G59340.1	Eukaryotic protein of unknown function (DUF914) 	LOC_Os05g23440.1	"solute carrier family 35 member F1, putative, expressed"	Medtr7g005790.1	"Protein of unknown function DUF914, eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.202508.1.S1_s_at	A	A2TS	POPTR_0002s23120	POPTR_0014s14990 (11)//POPTR_0002s23120 (11)	scaffold_14:11041104-11044108(-) (11)//scaffold_2:20553052-20556142(+) (11)	NA	Q5T1Q4	Solute carrier family 35 member F1	AT3G59340.1	Eukaryotic protein of unknown function (DUF914) 	LOC_Os05g23440.1	"solute carrier family 35 member F1, putative, expressed"	Medtr7g005790.1	"Protein of unknown function DUF914, eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.202509.1.S1_at	A	A1TS	POPTR_0002s23130	POPTR_0002s23130 (11)	scaffold_2:20557295-20557772(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202510.1.S1_at	A	A1TS	POPTR_0002s23160	POPTR_0002s23160 (11)	scaffold_2:20585252-20585804(-) (11)	NA	NA	NA	AT5G48040.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os02g32540.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr4g137920.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202511.1.S1_at	A	A1TS	POPTR_0002s23170	POPTR_0002s23170 (10)	scaffold_2:20589660-20593363(+) (10)	NA	P11435	Carboxyvinyl-carboxyphosphonate phosphorylmutase	AT2G43180.1	Phosphoenolpyruvate carboxylase family protein 	LOC_Os04g42580.1	"carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed"	Medtr7g005900.1	Isocitrate lyase and phosphorylmutase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202512.1.S1_at	A	A1TS	POPTR_0002s23180	POPTR_0002s23180 (11)	scaffold_2:20596959-20597194(-) (11)	NA	Q67YI9	Clathrin interactor EPSIN 2	AT2G43160.1	ENTH/VHS family protein 	LOC_Os02g56270.1	"ENTH domain containing protein, expressed"	Medtr7g005820.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202515.1.S1_at	A	A1TS	POPTR_0002s23230	POPTR_0002s23230 (11)	scaffold_2:20678432-20679026(+) (11)	NA	NA	NA	AT1G05790.1	lipase class 3 family protein 	LOC_Os01g67420.1	"lipase, putative, expressed"	Medtr1g147130.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.202516.1.S1_at	A	A1TS	POPTR_0002s23240	POPTR_0002s23240 (11)	scaffold_2:20700186-20700731(+) (11)	NA	Q9MA46	"Galactolipase DONGLE, chloroplastic"	AT1G05800.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os11g19340.1	"lipase, putative, expressed"	Medtr7g005980.1	"Peptidase S26A, signal peptidase I; Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.202517.1.S1_s_at	A	A1TS	POPTR_0002s23260	POPTR_0002s23260 (11)	scaffold_2:20720079-20720313(-) (9)//scaffold_2:20737408-20737642(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202518.1.S1_at	A	A1TS	POPTR_0002s23300	POPTR_0002s23300 (11)	scaffold_2:20764053-20764453(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.202519.1.S1_at	A	A1TS	POPTR_0002s23340	POPTR_0002s23340 (11)	scaffold_2:20797504-20797798(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202521.1.S1_at	A	A1TS	POPTR_0002s23360	POPTR_0002s23360 (11)	scaffold_2:20846015-20848037(-) (11)	NA	Q55CX9	Probable importin-7 homolog	AT2G31660.1	ARM repeat superfamily protein 	LOC_Os04g26841.1	"importin-8, putative"	Medtr7g021300.1	Armadillo-like helical 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.202522.1.S1_at	A	A1TS	POPTR_0002s23370	POPTR_0002s23370 (10)	scaffold_2:20869833-20870623(-) (10)	NA	O23277	Protein PRD1	AT4G14180.1	putative recombination initiation defect 1 	LOC_Os04g28020.1	expressed protein	Medtr3g104500.1	"PRD1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202523.1.S1_at	A	A1TS	POPTR_0002s23400	POPTR_0002s23400 (11)	scaffold_2:20913848-20916885(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT1G05840.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g26834.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr7g021310.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202524.1.S1_s_at	A	A1TS	POPTR_0002s23410	POPTR_0002s23410 (11)	scaffold_2:20919623-20919911(-) (11)	NA	A8MS78	Uncharacterized protein At1g05835	AT1G05835.1	PHD finger protein 	NA	NA	Medtr8g137550.1	TPD1  related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202525.1.S1_at	A	A1TS	POPTR_0002s23440	POPTR_0002s23440 (10)	scaffold_2:20965185-20967625(+) (11)	NA	Q9V3N8	Probable tRNA(His) guanylyltransferase	AT2G31580.1	tRNAHis guanylyltransferase 	LOC_Os05g45890.1	"tRNAHis guanylyltransferase family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202526.1.S1_at	A	A1TS	POPTR_0002s23470	POPTR_0002s23470 (11)	scaffold_2:20994156-20994591(-) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT3G28040.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os01g72700.1	expressed protein	Medtr7g022110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.202527.1.S1_at	A	A1TS	POPTR_0002s23490	POPTR_0002s23490 (11)	scaffold_2:21011679-21013026(-) (11)	NA	Q5XVJ4	Fanconi-associated nuclease 1 homolog	AT1G48360.2	"zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides "	LOC_Os06g07490.1	"HIRAN domain containing protein, putative, expressed"	Medtr7g022150.1	"Zinc finger, Rad18-type putative; "	NA	"GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides""||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding"	NA
PtpAffx.202528.1.S1_at	A	A1TS	POPTR_0002s23500	POPTR_0002s23500 (11)	scaffold_2:21024181-21024732(-) (11)	NA	NA	NA	AT5G62990.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os04g24710.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr3g105870.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202530.1.S1_at	A	A1TS	POPTR_0115s00230	POPTR_0115s00230 (11)	scaffold_115:19820-20630(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202531.1.S1_s_at	A	A4TS	POPTR_0017s02160	POPTR_0115s00225 (9)//POPTR_0017s02190 (9)//POPTR_0017s02160 (9)//POPTR_0115s00200 (9)	scaffold_115:1306-1338(+) (9)//scaffold_115:19113-19145(+) (9)//scaffold_17:1584431-1584463(+) (9)//scaffold_17:1608263-1608295(+) (9)	NA	Q6INR1	Eukaryotic translation initiation factor 3 subunit J	AT1G66070.2	Translation initiation factor eIF3 subunit 	LOC_Os02g02990.1	"translation initiation factor eIF3 subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202531.1.S1_x_at	A	A4MS	POPTR_0017s02160	POPTR_0115s00225 (11)//POPTR_0017s02160 (11)//POPTR_0115s00200 (11)//POPTR_0017s02190 (9)	scaffold_115:1199-1362(+) (11)//scaffold_115:19006-19169(+) (11)//scaffold_17:1584324-1584487(+) (11)//scaffold_17:1608156-1608319(+) (9)	NA	Q6INR1	Eukaryotic translation initiation factor 3 subunit J	AT1G66070.2	Translation initiation factor eIF3 subunit 	LOC_Os02g02990.1	"translation initiation factor eIF3 subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202532.1.S1_at	A	A1TS	POPTR_0115s00240	POPTR_0115s00240 (11)	scaffold_115:149-23620(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	NA	NA	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g024300.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202533.1.S1_s_at	A	A2TS	POPTR_0017s02190	POPTR_0115s00225 (11)//POPTR_0017s02190 (11)	scaffold_115:902-975(+) (11)//scaffold_115:18710-18783(+) (11)//scaffold_17:1584027-1584100(+) (11)//scaffold_17:1607859-1607932(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202534.1.S1_at	A	A1TS	POPTR_0017s02220	POPTR_0017s02220 (11)	scaffold_17:1629677-1631736(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT5G16560.1	Homeodomain-like superfamily protein 	LOC_Os09g23200.1	"KANADI1, putative"	Medtr3g087010.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202535.1.S1_at	A	A1TS	POPTR_0017s02240	POPTR_0017s02240 (11)	scaffold_17:1661466-1662602(-) (11)	NA	Q8BKC5	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os07g38760.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202536.1.S1_at	A	A1TS	POPTR_0017s02260	POPTR_0017s02260 (11)	scaffold_17:1672834-1673367(+) (11)	NA	Q9LUL5	Pentatricopeptide repeat-containing protein At3g14330	AT3G14330.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g41040.1	"pentatricopeptide, putative, expressed"	Medtr2g122730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202537.1.S1_at	A	A1TS	POPTR_0017s02270	POPTR_0017s02270 (11)	scaffold_17:1674486-1676160(-) (11)	NA	NA	NA	AT5G55490.1	gamete expressed protein 1 	LOC_Os09g27040.1	"GEX1, putative, expressed"	Medtr2g111350.1	ATGEX1/GEX1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202539.1.S1_at	A	A1TS	POPTR_0017s02350	POPTR_0017s02350 (11)	scaffold_17:1726826-1727538(-) (11)	NA	Q8GUM5	Nicastrin	AT3G52640.2	Zn-dependent exopeptidases superfamily protein 	LOC_Os02g50360.1	"nicalin, putative, expressed"	Medtr3g087260.1	Nicastrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202540.1.S1_at	A	A1TS	POPTR_0017s02360	POPTR_0017s02360 (11)	scaffold_17:1728190-1728711(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202541.1.S1_at	A	A1MS	POPTR_0017s02380	POPTR_0017s02380 (11)	scaffold_17:1731711-1731965(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202543.1.S1_at	A	A1TS	POPTR_0017s02430	POPTR_0017s02430 (10)	scaffold_17:1768649-1769613(+) (10)	NA	Q9M8S6	Potassium channel SKOR	AT3G02850.1	STELAR K+ outward rectifier 	LOC_Os06g14030.1	"potassium channel SKOR, putative, expressed"	Medtr5g085570.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.202544.1.S1_at	A	A1TS	POPTR_0017s02450	POPTR_0017s02450 (11)	scaffold_17:1775450-1776011(+) (11)	NA	Q9C810	PHD finger protein At1g33420	AT1G66170.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os03g50780.1	"PHD-finger domain containing protein, putative, expressed"	Medtr5g085540.1	"Calcium-binding EF-hand; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202545.1.S1_at	A	A1TS	POPTR_0017s02460	POPTR_0017s02460 (11)	scaffold_17:1778452-1778939(-) (11)	NA	NA	NA	AT4G01240.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g36710.1	methyltransferase domain containing protein	Medtr5g085490.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.202547.1.S1_at	A	A1TS	POPTR_0017s02590	POPTR_0017s02590 (11)	scaffold_17:1876920-1877226(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202548.1.S1_at	A	A1TS	POPTR_0017s02600	POPTR_0017s02600 (11)	scaffold_17:1879475-1879949(-) (11)	NA	Q9FME4	"Pentatricopeptide repeat-containing protein At5g60960, mitochondrial"	AT5G60960.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g41260.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g143860.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202550.1.S1_s_at	A	A3TS	POPTR_0017s02640	POPTR_0017s02660 (11)//POPTR_0017s02640 (11)//POPTR_0293s00220 (11)	scaffold_17:1905591-1906027(+) (11)//scaffold_17:1914328-1914764(+) (11)//scaffold_293:17162-17598(+) (11)	NA	O04086	Probable receptor-like protein kinase At1g11050	AT1G11050.1	Protein kinase superfamily protein 	LOC_Os05g34950.1	"cysteine-rich receptor-like protein kinase 6 precursor, putative, expressed"	Medtr2g006980.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202553.1.S1_at	A	A1TS	POPTR_0017s02670	POPTR_0017s02670 (11)	scaffold_17:1910884-1917688(-) (11)	NA	Q9SYF5	GDSL esterase/lipase 3	AT1G53990.1	GDSL-motif lipase 3 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.202554.1.S1_at	A	A1TS	POPTR_0017s02680	POPTR_0017s02680 (11)	scaffold_17:1923236-1923694(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os09g14490.1	"TIR-NBS type disease resistance protein, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.202555.1.S1_at	A	A1TS	POPTR_0017s02720	POPTR_0017s02720 (11)	scaffold_17:1951243-1951626(-) (11)	NA	Q9LT15	Sugar transport protein 10	AT3G19940.1	Major facilitator superfamily protein 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr3g009230.1	Major facilitator superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202556.1.S1_at	A	A1TS	POPTR_0017s02740	POPTR_0017s02740 (11)	scaffold_17:1957369-1957715(-) (11)	NA	O04491	Putative pentatricopeptide repeat-containing protein At1g09680	AT1G09680.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g38930.1	"pentatricopeptide, putative, expressed"	Medtr5g085730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202557.1.S1_at	A	A1TS	POPTR_0017s02760	POPTR_0017s02760 (11)	scaffold_17:1964004-1964053(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os04g24700.1	conserved hypothetical protein	Medtr3g026340.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202558.1.S1_at	A	A1TS	POPTR_0017s02790	POPTR_0017s02790 (11)	scaffold_17:1997584-1998120(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.202559.1.S1_at	A	A1TS	POPTR_0017s02800	POPTR_0017s02800 (11)	scaffold_17:2005378-2006538(+) (11)	NA	Q0WPN8	Cysteine-rich repeat secretory protein 60	AT5G37660.1	plasmodesmata-located protein 7 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr5g085800.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202560.1.S1_at	A	A1TS	POPTR_0017s02820	POPTR_0017s02820 (10)	scaffold_17:2026151-2026717(+) (11)	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os03g12250.1	"atypical receptor-like kinase MARK, putative, expressed"	Medtr5g085840.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.202561.1.S1_at	A	A1TS	POPTR_0017s02840	POPTR_0017s02840 (11)	scaffold_17:2039477-2039970(+) (11)	NA	NA	NA	AT5G16610.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g12120.1	"no apical meristem protein, putative, expressed"	Medtr5g085900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202562.1.S1_at	A	A1TS	POPTR_0017s02860	POPTR_0017s02860 (11)	scaffold_17:2076833-2077009(+) (11)	NA	Q9C7U5	"Glucan endo-1,3-beta-glucosidase 2"	AT1G66250.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g085920.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.202562.1.S1_s_at	A	A1TS	POPTR_0017s02860	POPTR_0017s02860 (11)	scaffold_17:2077125-2077612(+) (11)	NA	Q9C7U5	"Glucan endo-1,3-beta-glucosidase 2"	AT1G66250.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g085920.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.202563.1.S1_at	A	A1TS	POPTR_0017s02870	POPTR_0017s02870 (11)	scaffold_17:2081074-2081727(-) (11)	NA	Q9FHQ1	GDSL esterase/lipase At5g37690	AT5G37690.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os06g14630.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g085940.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.202564.1.S1_at	A	A1TS	POPTR_0017s02880	POPTR_0017s02880 (11)	scaffold_17:2088425-2090107(+) (11)	NA	NA	NA	AT5G37710.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.202565.1.S1_at	A	A1TS	POPTR_0017s02920	POPTR_0017s02920 (11)	scaffold_17:2106352-2107143(-) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	NA	NA	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202567.1.S1_at	A	A1TS	POPTR_0017s02990	POPTR_0017s02990 (11)	scaffold_17:2165340-2165535(+) (11)	NA	Q38851	Transcription repressor MYB6	AT4G09460.1	myb domain protein 6 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202568.1.S1_at	A	A1TS	POPTR_0017s03030	POPTR_0017s03030 (11)	scaffold_17:2194357-2194464(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202570.1.S1_at	A	A1TS	POPTR_0017s03060	POPTR_0017s03060 (11)	scaffold_17:2220405-2222011(-) (11)	NA	P49173	Probable aquaporin NIP-type	AT5G37820.1	NOD26-like intrinsic protein 4;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr5g087050.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.202572.1.S1_at	A	A1TS	POPTR_0005s14360	POPTR_0005s14360 (11)	scaffold_5:11421499-11422489(-) (11)	NA	Q9FJ00	Putative transcription factor bHLH086	AT5G37800.1	RHD SIX-LIKE 1 	LOC_Os02g48060.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr5g086970.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.202573.1.S1_at	A	A1TS	POPTR_0005s14370	POPTR_0005s14370 (11)	scaffold_5:11427756-11428173(-) (11)	NA	NA	NA	AT1G09700.1	dsRNA-binding domain-like superfamily protein 	LOC_Os08g29530.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr5g086960.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.202574.1.S1_at	A	A1TS	POPTR_0005s14380	POPTR_0005s14380 (10)	scaffold_5:11436085-11436668(+) (11)	NA	Q9FVX2	"Pentatricopeptide repeat-containing protein At1g77360, mitochondrial"	AT1G77360.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g48122.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g086640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202575.1.S1_at	A	A1TS	POPTR_0005s14400	POPTR_0005s14400 (11)	scaffold_5:11454166-11454390(-) (11)	NA	Q9SRP7	Probable calcium-binding protein CML28	AT3G03430.1	Calcium-binding EF-hand family protein 	LOC_Os08g44660.1	"EF hand family protein, putative, expressed"	Medtr5g086920.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202576.1.S1_s_at	A	A1TS	POPTR_0005s14420	POPTR_0005s14420 (10)	scaffold_4:7411093-7411200(-) (10)//scaffold_5:11459778-11459885(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202576.1.S1_x_at	A	A1TS	POPTR_0005s14420	POPTR_0005s14420 (10)	scaffold_5:11459477-11460062(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202577.1.S1_at	A	A1TS	POPTR_0005s14440	POPTR_0005s14440 (11)	scaffold_5:11470746-11471923(-) (11)	NA	Q8RWE8	GDP-L-galactose phosphorylase 1	AT4G26850.1	mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase 	LOC_Os12g08810.1	"VTC2, putative, expressed"	Medtr5g100780.1	"VTC2-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202578.1.S1_x_at	A	A1TS	POPTR_0005s14480	POPTR_0005s14480 (11)	scaffold_5:11534765-11536145(-) (11)	NA	Q9FNV9	Transcription factor MYB113	AT1G66370.1	myb domain protein 113 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g086820.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202579.1.S1_x_at	A	A1TS	POPTR_0005s14490	POPTR_0005s14490 (9)	scaffold_5:11541217-11543311(-) (11)	NA	Q9FNV9	Transcription factor MYB113	AT1G66370.1	myb domain protein 113 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g086820.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202580.1.S1_at	A	A1TS	POPTR_0005s14530	POPTR_0005s14530 (11)	scaffold_5:11567496-11568708(+) (11)	NA	NA	NA	AT1G70780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g21925.1	expressed protein	Medtr1g034970.1	"Senescence-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202581.1.S1_at	A	A1TS	POPTR_0005s14560	POPTR_0005s14560 (11)	scaffold_5:11606486-11607625(+) (11)	NA	NA	NA	AT1G27700.1	Syntaxin/t-SNARE family protein 	LOC_Os05g37150.2	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr1g023580.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.202581.1.S1_s_at	A	A1TS	POPTR_0005s14560	POPTR_0005s14560 (11)	scaffold_5:11605969-11607677(+) (11)	NA	NA	NA	AT1G27700.1	Syntaxin/t-SNARE family protein 	LOC_Os05g37150.2	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr1g023580.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.202582.1.S1_at	A	A1TS	POPTR_0005s14570	POPTR_0005s14570 (11)	scaffold_5:11608661-11609584(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202583.1.S1_at	A	A1TS	POPTR_0005s14590	POPTR_0005s14590 (11)	scaffold_5:11617178-11617729(-) (11)	NA	Q94ID7	"Geranylgeranyl pyrophosphate synthase, chloroplastic"	AT4G36810.1	geranylgeranyl pyrophosphate synthase 1 	LOC_Os01g14630.1	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.202584.1.S1_at	A	A1TS	POPTR_0005s14600	POPTR_0005s14600 (11)	scaffold_5:11619290-11619865(-) (11)	NA	Q94ID7	"Geranylgeranyl pyrophosphate synthase, chloroplastic"	AT4G36810.1	geranylgeranyl pyrophosphate synthase 1 	LOC_Os01g14630.1	"polyprenyl synthetase, putative, expressed"	Medtr5g019360.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.202585.1.S1_s_at	A	A1TS	POPTR_0005s14610	POPTR_0005s14610 (11)	scaffold_5:11635105-11635697(+) (11)	NA	Q3AF87	Valyl-tRNA synthetase	AT5G16715.1	ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os03g48850.2	"valyl-tRNA synthetase, putative, expressed"	Medtr1g129510.1	"Isoleucyl-tRNA synthetase, class Ia; "	GO:0006438|valyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004832|valine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.202587.1.S1_s_at	A	A1TS	POPTR_0005s14650	POPTR_0005s14650 (11)	scaffold_5:11659903-11660467(-) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G02645.1	Plant protein of unknown function (DUF247) 	LOC_Os06g08120.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g015670.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202589.1.S1_s_at	A	A1TS	POPTR_0005s14660	POPTR_0005s14660 (11)	scaffold_5:11666258-11666698(+) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os02g45770.1	"OsMADS6 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g048190.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.202590.1.S1_at	A	A1TS	POPTR_0005s14670	POPTR_0005s14670 (11)	scaffold_5:11671967-11674901(+) (11)	NA	Q9Y312	Uncharacterized protein C20orf4	AT1G66510.2	AAR2 protein family 	LOC_Os04g04320.1	expressed protein	Medtr5g087230.1	AAR2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202592.1.S1_at	A	A1MS	POPTR_0005s14710	POPTR_0005s14710 (11)	scaffold_5:11693417-11693533(+) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31550.1	"disease resistance protein RGA4, putative"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.202593.1.S1_s_at	A	A1TS	POPTR_0005s14720	POPTR_0005s14720 (11)	scaffold_5:11702006-11703346(-) (11)	NA	NA	NA	AT5G17450.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g32330.1	"heavy metal-associated domain containing protein, expressed"	Medtr7g094270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.202594.1.S1_at	A	A1TS	POPTR_0005s14750	POPTR_0005s14750 (11)	scaffold_5:11712918-11713417(-) (11)	NA	Q9C6H3	E3 ubiquitin-protein ligase SINA-like 2	AT1G66620.1	Protein with RING/U-box and TRAF-like domains 	NA	NA	Medtr5g084560.1	Ubiquitin; TRAF-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202595.1.S1_at	A	A1TS	POPTR_0005s14760	POPTR_0005s14760 (11)	scaffold_5:11715286-11718136(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G18950.1	Integrin-linked protein kinase family 	LOC_Os01g54480.1	"serine/threonine protein kinase, putative, expressed"	Medtr5g099160.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202596.1.S1_s_at	A	A2TS	POPTR_0005s14770	POPTR_1263s00210 (11)//POPTR_0005s14770 (11)	scaffold_1263:4562-4708(-) (11)//scaffold_5:11721029-11721175(+) (11)	NA	Q9FKC8	Probable S-adenosylmethionine-dependent methyltransferase At5g37990	AT5G37990.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g21820.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.202597.1.S1_s_at	A	A1MS	POPTR_0005s14800	POPTR_0005s14800 (11)	scaffold_5:11731656-11732188(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g084720.1	Ubiquitin; TRAF-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202599.1.S1_at	A	A1TS	POPTR_0005s14980	POPTR_0005s14980 (11)	scaffold_5:11824604-11825105(+) (11)	NA	NA	NA	AT3G03280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g47960.1	expressed protein	Medtr1g137740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20260.2.S1_a_at	A	A1MS	POPTR_0001s06570	POPTR_0001s06570 (11)	scaffold_1:5057104-5057639(+) (11)	NA	O22193	U-box domain-containing protein 4	AT1G08315.1	ARM repeat superfamily protein 	LOC_Os01g72600.1	"spotted leaf 11, putative, expressed"	Medtr8g043200.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202600.1.S1_at	A	A1TS	POPTR_0005s15010	POPTR_0005s15010 (11)	scaffold_5:11840554-11840918(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g133610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202602.1.S1_at	A	A1TS	POPTR_0005s15040	POPTR_0005s15040 (11)	scaffold_5:11858005-11858474(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G66760.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.202603.1.S1_at	A	A1TS	POPTR_0005s15050	POPTR_0005s15050 (11)	scaffold_5:11863247-11864264(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G71140.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.202604.1.S1_at	A	A1TS	POPTR_0005s15060	POPTR_0005s15060 (11)	scaffold_5:11867086-11867815(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT2G04100.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr7g094030.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.202605.1.S1_at	A	A1TS	POPTR_0005s15070	POPTR_0005s15070 (11)	scaffold_5:11869322-11869768(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202606.1.S1_at	A	A1TS	POPTR_0005s15080	POPTR_0005s15080 (11)	scaffold_5:11899046-11900516(+) (11)	NA	Q54SA5	WD repeat-containing protein 55 homolog	AT2G34260.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g46620.1	"WD repeat-containing protein 55, putative, expressed"	Medtr8g116420.1	Inorganic pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202607.1.S1_at	A	A1TS	POPTR_0005s15090	POPTR_0005s15090 (10)	scaffold_5:11905683-11907323(-) (10)	NA	Q8LCG7	Nuclear transcription factor Y subunit C-2	AT1G56170.2	"nuclear factor Y, subunit C2 "	LOC_Os06g45640.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr1g099280.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.202608.1.S1_s_at	A	A1TS	POPTR_0005s15090	POPTR_0005s15090 (11)	scaffold_5:11905906-11906310(-) (11)	NA	Q8LCG7	Nuclear transcription factor Y subunit C-2	AT1G56170.2	"nuclear factor Y, subunit C2 "	LOC_Os06g45640.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr1g099280.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.202609.1.S1_s_at	A	A1TS	POPTR_0005s15100	POPTR_0005s15100 (11)	scaffold_5:11912321-11912627(-) (11)	NA	Q9C9N3	Zinc finger CCCH domain-containing protein 14	AT1G66810.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os05g50080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	AC235678_14.1	"Zinc finger, CCCH-type AC235678.1 77770-76962 F EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.202610.1.S1_at	A	A1TS	POPTR_0005s15140	POPTR_0005s15140 (11)	scaffold_5:11930457-11930631(-) (11)	NA	Q8LFD1	"Putative lipid phosphate phosphatase 3, chloroplastic"	AT3G02600.2	lipid phosphate phosphatase 3 	LOC_Os01g04660.1	"lipid phosphatase protein, putative, expressed"	Medtr7g093870.1	"Phosphoesterase, PA-phosphatase related "	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.202611.1.S1_at	A	A1TS	POPTR_0005s15160	POPTR_0005s15160 (11)	scaffold_5:11946823-11947547(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.202612.1.S1_at	A	A1TS	POPTR_0005s15180	POPTR_0005s15180 (11)	scaffold_5:11953557-11954064(-) (11)	NA	Q9C9N5	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830	AT2G01210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g33090.1	expressed protein	Medtr7g076330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.202613.1.S1_at	A	A1TS	POPTR_0005s15190	POPTR_0005s15190 (11)	scaffold_5:11958800-11959364(-) (11)	NA	Q9C9N6	Protein PLASTID MOVEMENT IMPAIRED 2	AT1G66840.1	Plant protein of unknown function (DUF827) 	LOC_Os01g49740.1	expressed protein	Medtr7g093840.1	"Protein PLASTID MOVEMENT IMPAIRED 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202614.1.S1_at	A	A1TS	POPTR_0005s15200	POPTR_0005s15200 (10)	scaffold_5:11971922-11972575(+) (10)	NA	P82861	"NADPH:adrenodoxin oxidoreductase, mitochondrial"	AT4G32360.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g17700.1	"pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed"	Medtr4g159300.1	NAD-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202616.1.S1_at	A	A1TS	POPTR_0002s23540	POPTR_0002s23540 (11)	scaffold_2:21093553-21094126(-) (11)	NA	Q8L4R0	"Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic"	AT1G19800.1	trigalactosyldiacylglycerol 1 	LOC_Os04g46700.2	"ABC family transporter: toluene tolerance, putative, expressed"	Medtr3g012660.1	Protein of unknown function DUF140 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202617.1.S1_at	A	A1MS	POPTR_0002s23550	POPTR_0002s23550 (10)	scaffold_2:21107082-21108281(+) (11)	NA	Q6ZY51	"Phosphoglucan, water dikinase, chloroplastic"	AT5G26570.1	"catalytics;carbohydrate kinases;phosphoglucan, water dikinases "	LOC_Os12g20150.1	"phosphoglucan, water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation||GO:0005975|carbohydrate metabolic process	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.202618.1.S1_at	A	A1TS	POPTR_0002s23570	POPTR_0002s23570 (11)	scaffold_2:21119300-21119728(-) (11)	NA	NA	NA	AT1G14780.1	MAC/Perforin domain-containing protein 	LOC_Os02g27480.1	"membrane attack complex component/perforin/complement C9, putative, expressed"	Medtr4g147340.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202621.1.S1_at	A	A1TS	POPTR_0002s23610	POPTR_0002s23610 (11)	scaffold_2:21143428-21144695(-) (11)	NA	Q91VC0	dCTP pyrophosphatase 1	AT3G25400.1	"CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). "	LOC_Os02g27810.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	Medtr7g046000.1	MazG nucleotide pyrophosphohydrolase; Pyrophosphohydrolase MazG RS21-C6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202621.1.S1_s_at	A	A1TS	POPTR_0002s23610	POPTR_0002s23610 (11)	scaffold_2:21143373-21143606(-) (11)	NA	Q91VC0	dCTP pyrophosphatase 1	AT3G25400.1	"CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). "	LOC_Os02g27810.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	Medtr7g046000.1	MazG nucleotide pyrophosphohydrolase; Pyrophosphohydrolase MazG RS21-C6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202621.1.S1_x_at	A	A1TS	POPTR_0002s23610	POPTR_0002s23610 (11)	scaffold_2:21143413-21144695(-) (11)	NA	Q91VC0	dCTP pyrophosphatase 1	AT3G25400.1	"CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). "	LOC_Os02g27810.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	Medtr7g046000.1	MazG nucleotide pyrophosphohydrolase; Pyrophosphohydrolase MazG RS21-C6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202622.1.S1_at	A	A1TS	POPTR_0002s23620	POPTR_0002s23620 (11)	scaffold_2:21153880-21156125(-) (11)	NA	NA	NA	AT4G29400.1	Protein of unknown function (DUF3531) 	LOC_Os01g37820.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr8g050210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202623.1.S1_at	A	A1TS	POPTR_0002s23640	POPTR_0002s23640 (11)	scaffold_2:21175705-21176165(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202624.1.S1_s_at	A	A1TS	POPTR_0002s23650	POPTR_0002s23650 (11)	scaffold_2:21187042-21187729(+) (11)	NA	Q9SRT2	Transcription factor bHLH62	AT3G07340.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr8g012630.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.202625.1.S1_at	A	A1TS	POPTR_0002s23660	POPTR_0002s23660 (11)	scaffold_2:21193688-21195125(-) (11)	NA	Q9GYZ0	Kinesin-like protein KIF15	AT3G23670.1	"phragmoplast-associated kinesin-related protein, putative "	LOC_Os03g39020.1	"Kinesin motor domain domain containing protein, expressed"	Medtr3g104360.1	"Kinesin, motor region; Kinesin-related "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.202626.1.S1_at	A	A1TS	POPTR_0002s23680	POPTR_0002s23680 (10)	scaffold_2:21211296-21211835(+) (10)	NA	P31828	Probable zinc protease pqqL	AT5G42390.1	Insulinase (Peptidase family M16) family protein 	LOC_Os06g41990.2	"M16 domain containing zinc peptidase, putative, expressed"	Medtr5g007490.1	"Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.202627.1.S1_at	A	A1MS	POPTR_0002s23680	POPTR_0002s23680 (11)	scaffold_2:21217533-21218224(+) (11)	NA	P31828	Probable zinc protease pqqL	AT5G42390.1	Insulinase (Peptidase family M16) family protein 	LOC_Os06g41990.2	"M16 domain containing zinc peptidase, putative, expressed"	Medtr5g007490.1	"Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.202628.1.S1_at	A	A1TS	POPTR_0002s23700	POPTR_0002s23700 (11)	scaffold_2:21233293-21233725(-) (11)	NA	NA	NA	AT4G14200.1	Pentatricopeptide repeat (PPR) superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202629.1.S1_at	A	A1TS	POPTR_0002s23720	POPTR_0002s23720 (11)	scaffold_2:21244978-21245962(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202630.1.S1_at	A	A1TS	POPTR_0002s23820	POPTR_0002s23820 (11)	scaffold_2:21300746-21301314(-) (11)	NA	Q9S7F4	Putative pentatricopeptide repeat-containing protein At2g01510	AT3G02010.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g01115.1	"pentatricopeptide, putative"	Medtr7g096950.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202632.1.S1_a_at	A	A1TS	POPTR_0002s23840	POPTR_0002s23840 (11)	scaffold_2:21310627-21310672(-) (11)//scaffold_2:21310702-21310747(-) (11)	NA	Q55750	Transcription-repair-coupling factor	AT3G02060.2	"DEAD/DEAH box helicase, putative "	LOC_Os11g32880.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g099370.1	"Haem peroxidase, plant/fungal/bacterial; ATP-requiring DNA helicase RecQ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003700|transcription factor activity||GO:0003684|damaged DNA binding	NA
PtpAffx.202632.1.S1_at	A	A1TS	POPTR_0002s23840	POPTR_0002s23840 (11)	scaffold_2:21310321-21310674(-) (11)	NA	Q55750	Transcription-repair-coupling factor	AT3G02060.2	"DEAD/DEAH box helicase, putative "	LOC_Os11g32880.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g099370.1	"Haem peroxidase, plant/fungal/bacterial; ATP-requiring DNA helicase RecQ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003700|transcription factor activity||GO:0003684|damaged DNA binding	NA
PtpAffx.202633.1.S1_at	A	A1TS	POPTR_0002s23850	POPTR_0002s23850 (11)	scaffold_2:21321563-21321998(-) (11)	NA	Q9LD18	Potassium transporter 4	AT3G02050.1	K+ uptake transporter 3 	LOC_Os07g47350.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.202634.1.S1_at	A	A1TS	POPTR_0002s23900	POPTR_0002s23900 (11)	scaffold_2:21385869-21386573(+) (11)	NA	Q8GZB6	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4"	AT5G13960.1	SU(VAR)3-9 homolog 4 	LOC_Os01g70220.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr7g097120.1	SET-related region; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.202634.1.S1_s_at	A	A1TS	POPTR_0002s23900	POPTR_0002s23900 (11)	scaffold_2:21386675-21387646(+) (11)	NA	Q8GZB6	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4"	AT5G13960.1	SU(VAR)3-9 homolog 4 	LOC_Os01g70220.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr7g097120.1	SET-related region; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.202635.1.S1_at	A	A1TS	POPTR_0002s23920	POPTR_0002s23920 (11)	scaffold_2:21402565-21402680(+) (11)	NA	Q60HE9	Lysosomal alpha-mannosidase	AT3G26720.1	Glycosyl hydrolase family 38 protein 	LOC_Os11g32260.1	"lysosomal alpha-mannosidase precursor, putative, expressed"	Medtr7g097040.1	"Glycoside hydrolase, family 38; Sugar transporter superfamily; Galactose mutarotase-like; "	GO:0044262|cellular carbohydrate metabolic process||GO:0006013|mannose metabolic process||GO:0044281|small molecule metabolic process	GO:0008270|zinc ion binding||GO:0004559|alpha-mannosidase activity	NA
PtpAffx.202635.1.S1_s_at	A	A1TS	POPTR_0002s23920	POPTR_0002s23920 (11)	scaffold_2:21401735-21402658(+) (11)	NA	Q60HE9	Lysosomal alpha-mannosidase	AT3G26720.1	Glycosyl hydrolase family 38 protein 	LOC_Os11g32260.1	"lysosomal alpha-mannosidase precursor, putative, expressed"	Medtr7g097040.1	"Glycoside hydrolase, family 38; Sugar transporter superfamily; Galactose mutarotase-like; "	GO:0044262|cellular carbohydrate metabolic process||GO:0006013|mannose metabolic process||GO:0044281|small molecule metabolic process	GO:0008270|zinc ion binding||GO:0004559|alpha-mannosidase activity	NA
PtpAffx.202636.1.S1_at	A	A1TS	POPTR_0002s23940	POPTR_0002s23940 (11)	scaffold_2:21412980-21413444(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202637.1.S1_at	A	A1MS	POPTR_0002s23950	POPTR_0002s23950 (11)	scaffold_2:21421030-21422468(-) (11)	NA	Q4PE39	Protein transport protein SEC23	AT2G21630.1	Sec23/Sec24 protein transport family protein 	LOC_Os08g36994.2	"protein transport protein, putative, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	GO:0030127|COPII vesicle coat
PtpAffx.202637.1.S1_s_at	A	A2TS	POPTR_0002s23950	POPTR_0014s17660 (11)//POPTR_0002s23950 (11)	scaffold_14:13940659-13942378(+) (11)//scaffold_2:21422017-21423509(-) (11)	NA	Q4PE39	Protein transport protein SEC23	AT2G21630.1	Sec23/Sec24 protein transport family protein 	LOC_Os08g36994.2	"protein transport protein, putative, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	GO:0030127|COPII vesicle coat
PtpAffx.202638.1.S1_at	A	A1TS	POPTR_0002s23970	POPTR_0002s23970 (11)	scaffold_2:21454441-21454909(+) (11)	NA	NA	NA	AT5G48890.1	C2H2-like zinc finger protein 	NA	NA	Medtr8g128720.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202639.1.S1_at	A	A1MS	POPTR_0002s23990	POPTR_0002s23990 (10)	scaffold_2:21470932-21470965(+) (10)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202639.1.S1_s_at	A	A1TS	POPTR_0002s23990	POPTR_0002s23990 (9)	scaffold_2:21470338-21471024(+) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202640.1.S1_at	A	A1TS	POPTR_0002s23990	POPTR_0002s23990 (11)	scaffold_2:21474147-21475107(+) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202642.1.S1_at	A	A1MS	POPTR_0002s24020	POPTR_0002s24020 (10)	scaffold_2:21501747-21502080(+) (10)	NA	Q9SRR7	Calmodulin-like protein 3	AT3G07490.1	ARF-GAP domain 11 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr7g106770.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202643.1.S1_at	A	A1TS	POPTR_0002s24030	POPTR_0002s24030 (11)	scaffold_2:21504488-21505655(-) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT2G43280.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g50900.1	"transposon protein, putative, unclassified, expressed"	Medtr2g118460.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202644.1.S1_at	A	A1TS	POPTR_0002s24060	POPTR_0002s24060 (11)	scaffold_2:21521161-21521613(-) (11)	NA	Q9FIF7	"Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic"	AT5G59200.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g02280.1	"pentatricopeptide, putative, expressed"	Medtr8g119600.1	Pancreatic ribonuclease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202646.1.S1_at	A	A1TS	POPTR_0002s24130	POPTR_0002s24130 (11)	scaffold_2:21555272-21555831(-) (11)	NA	Q8S0F0	Formin-like protein 1	AT2G43800.1	Actin-binding FH2 (formin homology 2) family protein 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr7g092450.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202646.1.S1_x_at	A	A1TS	POPTR_0002s24130	POPTR_0002s24130 (11)	scaffold_2:21555272-21555831(-) (11)	NA	Q8S0F0	Formin-like protein 1	AT2G43800.1	Actin-binding FH2 (formin homology 2) family protein 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr7g092450.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202647.1.S1_at	A	A1TS	POPTR_0002s24130	POPTR_0002s24130 (11)	scaffold_2:21559685-21560205(-) (11)	NA	Q8S0F0	Formin-like protein 1	AT2G43800.1	Actin-binding FH2 (formin homology 2) family protein 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr7g092450.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202648.1.S1_at	A	A1TS	POPTR_0002s24140	POPTR_0002s24140 (9)	scaffold_2:21584965-21585686(+) (11)	NA	NA	NA	AT3G24750.1	unknown protein; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g071310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202649.1.S1_at	A	A1TS	POPTR_0002s24150	POPTR_0002s24150 (11)	scaffold_2:21587980-21588997(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202650.1.S1_at	A	A1TS	POPTR_0002s24160	POPTR_0002s24160 (11)	scaffold_2:21592792-21593271(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202652.1.S1_at	A	A1TS	POPTR_0002s24190	POPTR_0002s24190 (11)	scaffold_2:21618736-21619742(+) (11)	NA	O24035	Pantoate--beta-alanine ligase	AT5G48840.1	homolog of bacterial PANC 	LOC_Os03g63490.1	"pantoate--beta-alanine ligase, putative, expressed"	Medtr7g064910.1	Pantoate-beta-alanine ligase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0015940|pantothenate biosynthetic process	GO:0004592|pantoate-beta-alanine ligase activity	NA
PtpAffx.202653.1.S1_at	A	A1TS	POPTR_0002s24220	POPTR_0002s24220 (9)	scaffold_2:21633062-21634426(-) (11)	NA	Q54KS4	Guanine nucleotide-binding protein-like 3 homolog	AT3G07050.1	GTP-binding family protein 	LOC_Os01g27730.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.202654.1.S1_s_at	A	A1TS	POPTR_0002s24220	POPTR_0002s24220 (11)	scaffold_2:21636005-21636230(-) (11)	NA	Q54KS4	Guanine nucleotide-binding protein-like 3 homolog	AT3G07050.1	GTP-binding family protein 	LOC_Os01g27730.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.202655.1.S1_at	A	A1TS	POPTR_0002s24230	POPTR_0002s24230 (11)	scaffold_2:21647053-21650660(+) (11)	NA	NA	NA	AT5G48830.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g31070.1	expressed protein	Medtr7g064770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202656.1.S1_at	A	A1TS	POPTR_0002s24280	POPTR_0002s24280 (11)	scaffold_2:21688874-21689611(+) (11)	NA	Q5ZI67	NHL repeat-containing protein 2	AT3G07060.1	NHL domain-containing protein 	LOC_Os08g04120.1	expressed protein	Medtr7g027470.2	"TolB, C-terminal; Ribosomal L23 and L15e, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202657.1.S1_at	A	A1TS	POPTR_0002s24300	POPTR_0002s24300 (11)	scaffold_2:21697169-21697946(+) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT3G07070.1	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202658.1.S1_at	A	A1TS	POPTR_0002s24320	POPTR_0002s24320 (11)	scaffold_2:21728708-21729014(+) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr7g064530.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202659.1.S1_at	A	A1MS	POPTR_0002s24330	POPTR_0002s24330 (9)	scaffold_2:21735487-21735608(+) (9)	NA	Q8LBL5	E3 ubiquitin-protein ligase PRT1	AT3G24800.1	proteolysis 1 	LOC_Os02g40810.1	"Zinc finger, ZZ type domain containing protein, expressed"	Medtr4g023530.1	"Zinc finger, ZZ-type; Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202660.1.S1_at	A	A1TS	POPTR_0002s24350	POPTR_0002s24350 (11)	scaffold_2:21740188-21740767(+) (11)	NA	P29060	Acidic endochitinase	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr5g046400.1	"Glycoside hydrolase, family 18 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.202662.1.S1_at	A	A1TS	POPTR_0002s24380	POPTR_0002s24380 (11)	scaffold_2:21772972-21773405(+) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT5G48800.1	Phototropic-responsive NPH3 family protein 	LOC_Os12g02540.1	"BTBN23 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr4g023540.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.202663.1.S1_at	A	A1TS	POPTR_0002s24390	POPTR_0002s24390 (11)	scaffold_2:21774810-21775279(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202664.1.S1_at	A	A1TS	POPTR_0002s24430	POPTR_0002s24430 (11)	scaffold_2:21802612-21805638(-) (11)	NA	NA	NA	AT4G13150.1	unknown protein; Has 83 Blast hits to 82 proteins in 37 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g09440.1	expressed protein	AC146793_11.1	hypothetical protein AC146793.7 65072-69214 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202665.1.S1_at	A	A1TS	POPTR_0002s24430	POPTR_0002s24430 (10)	scaffold_2:21806941-21808469(-) (11)	NA	NA	NA	AT4G13150.1	unknown protein; Has 83 Blast hits to 82 proteins in 37 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g09440.1	expressed protein	AC146793_11.1	hypothetical protein AC146793.7 65072-69214 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202666.1.S1_at	A	A1MS	POPTR_0002s24440	POPTR_0002s24440 (10)	scaffold_2:21814082-21814415(+) (10)	NA	NA	NA	AT4G13630.2	"Protein of unknown function, DUF593 "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202668.1.S1_at	A	A1MS	POPTR_0002s24450	POPTR_0002s24450 (9)	scaffold_2:21834056-21834568(+) (10)	NA	Q10137	Sec14 cytosolic factor	AT3G24840.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g48990.1	"phosphatidylinositol transfer, putative, expressed"	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202669.1.S1_at	A	A1TS	POPTR_0002s24460	POPTR_0002s24460 (11)	scaffold_2:21836245-21836763(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202670.1.S1_at	A	A1TS	POPTR_0002s24470	POPTR_0002s24470 (10)	scaffold_2:21838066-21838674(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202671.1.S1_at	A	A1TS	POPTR_0002s24480	POPTR_0002s24480 (10)	scaffold_2:21839853-21840446(+) (11)	NA	NA	NA	AT3G24860.1	Homeodomain-like superfamily protein 	LOC_Os08g37810.1	"transcription factor like protein, putative, expressed"	Medtr5g017480.1	MADF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202672.1.S1_s_at	A	A1TS	POPTR_0002s24510	POPTR_0002s24510 (11)	scaffold_2:21868751-21869270(-) (11)	NA	Q9FKC3	"Pentatricopeptide repeat-containing protein At5g48730, chloroplastic"	AT5G48730.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g07550.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g039890.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202674.1.S1_at	A	A1TS	POPTR_0002s24530	POPTR_0002s24530 (11)	scaffold_2:21893273-21893310(+) (11)	NA	NA	NA	AT3G07120.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g087330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202674.1.S1_s_at	A	A1TS	POPTR_0002s24530	POPTR_0002s24530 (11)	scaffold_2:21893377-21893872(+) (11)	NA	NA	NA	AT3G07120.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g087330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202675.1.S1_at	A	A1TS	POPTR_0002s24560	POPTR_0002s24560 (11)	scaffold_2:21914206-21915053(-) (11)	NA	NA	NA	AT1G28230.1	purine permease 1 	LOC_Os09g29239.1	"purine permease, putative, expressed"	Medtr3g150070.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202676.1.S1_at	A	A1TS	POPTR_0002s24570	POPTR_0002s24570 (11)	scaffold_2:21921061-21921871(+) (11)	NA	Q9SV60	Xyloglucan endotransglucosylase/hydrolase protein 2	AT4G13090.1	xyloglucan endotransglucosylase/hydrolase 2 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099550.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.202677.1.S1_at	A	A1TS	POPTR_0002s24580	POPTR_0002s24580 (11)	scaffold_2:21924493-21925492(+) (11)	NA	NA	NA	AT3G07140.2	GPI transamidase component Gpi16 subunit family protein 	LOC_Os11g28980.1	"GPI transamidase component Gpi16 subunit family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202678.1.S1_at	A	A1TS	POPTR_0002s24590	POPTR_0002s24590 (11)	scaffold_2:21926478-21928149(-) (11)	NA	NA	NA	AT3G07150.1	unknown protein; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g68960.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202679.1.S1_at	A	A1TS	POPTR_0002s24610	POPTR_0002s24610 (11)	scaffold_2:21934879-21935389(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G65450.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g70025.1	"transferase family protein, putative"	Medtr3g150860.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.202680.1.S1_s_at	A	A1TS	POPTR_0002s24640	POPTR_0002s24640 (11)	scaffold_2:21951876-21952412(+) (11)	NA	NA	NA	AT1G06440.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os10g36680.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr7g105350.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202681.1.S1_at	A	A1TS	POPTR_0002s24650	POPTR_0002s24650 (11)	scaffold_2:21956066-21956637(+) (11)	NA	Q9LJR6	"Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial"	AT3G25060.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g39460.2	"selenium-binding protein-like, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202682.1.S1_at	A	A1TS	POPTR_0002s24720	POPTR_0002s24720 (11)	scaffold_2:22011212-22011495(-) (11)	NA	NA	NA	AT1G48140.1	dolichol-phosphate mannosyltransferase-related 	LOC_Os02g51420.1	hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202683.1.S1_at	A	A1MS	POPTR_0002s24750	POPTR_0002s24750 (9)	scaffold_2:22024276-22024923(-) (9)	NA	Q56XP9	Ethylene-responsive transcription factor-like protein At4g13040	AT4G13040.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g29550.2	"AP2 domain containing protein, expressed"	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.202684.1.S1_at	A	A1TS	POPTR_0002s24750	POPTR_0002s24750 (9)	scaffold_2:22025861-22029618(-) (9)	NA	Q56XP9	Ethylene-responsive transcription factor-like protein At4g13040	AT4G13040.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g29550.2	"AP2 domain containing protein, expressed"	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.202685.1.S1_at	A	A1TS	POPTR_0002s24780	POPTR_0002s24780 (11)	scaffold_2:22047797-22048122(+) (11)	NA	NA	NA	AT3G25130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). 	LOC_Os11g26990.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202685.1.S1_s_at	A	A1TS	POPTR_0002s24780	POPTR_0002s24780 (11)	scaffold_2:22047874-22048376(+) (11)	NA	NA	NA	AT3G25130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). 	LOC_Os11g26990.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202686.1.S1_at	A	A1TS	POPTR_0002s24810	POPTR_0002s24810 (11)	scaffold_2:22062679-22064295(-) (11)	NA	O44017	ER lumen protein retaining receptor	AT3G25160.1	ER lumen protein retaining receptor family protein 	LOC_Os08g43470.1	"ER lumen protein retaining receptor, putative, expressed"	Medtr3g156420.1	ER lumen protein retaining receptor; Orn/DAP/Arg decarboxylase 2 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
PtpAffx.202688.1.S1_at	A	A1TS	POPTR_0002s24830	POPTR_0002s24830 (11)	scaffold_2:22073787-22074275(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202689.1.S1_at	A	A1TS	POPTR_0002s24880	POPTR_0002s24880 (11)	scaffold_2:22093779-22094928(-) (11)	NA	NA	NA	AT4G13030.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g19280.1	expressed protein	Medtr7g062150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202690.1.S1_at	A	A1TS	POPTR_0002s24900	POPTR_0002s24900 (11)	scaffold_2:22118790-22119103(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202691.1.S1_at	A	A1MA	POPTR_0002s24940	POPTR_0002s24940 (9)	scaffold_2:22146414-22147000(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202692.1.S1_at	A	A1TS	POPTR_0002s24950	POPTR_0002s24950 (11)	scaffold_2:22152400-22152866(+) (11)	NA	Q9LSF5	"Pentatricopeptide repeat-containing protein At3g25210, mitochondrial"	AT3G25210.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g08570.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g022350.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202693.1.S1_at	A	A1TS	POPTR_0002s25000	POPTR_0002s25000 (11)	scaffold_2:22219716-22219895(+) (11)	NA	Q9SRT0	U-box domain-containing protein 9	AT3G07360.1	plant U-box 9 	LOC_Os02g28720.1	"spotted leaf 11, putative, expressed"	Medtr7g143240.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.202694.1.S1_at	A	A1TS	POPTR_0002s25040	POPTR_0002s25040 (11)	scaffold_2:22243917-22244441(+) (11)	NA	Q9LSF1	Serine/threonine-protein kinase OXI1	AT3G25250.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os08g39460.1	"AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g012270.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202694.1.S1_x_at	A	A1TS	POPTR_0002s25040	POPTR_0002s25040 (11)	scaffold_2:22243917-22244311(+) (11)	NA	Q9LSF1	Serine/threonine-protein kinase OXI1	AT3G25250.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os08g39460.1	"AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g012270.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202695.1.S1_at	A	A1TS	POPTR_0002s25090	POPTR_0002s25090 (11)	scaffold_2:22293651-22293881(+) (11)	NA	NA	NA	AT3G07400.1	lipase class 3 family protein 	LOC_Os02g28040.1	"lipase, putative, expressed"	Medtr8g012090.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.202697.1.S1_at	A	A1TS	POPTR_0002s25110	POPTR_0002s25110 (9)	scaffold_2:22309184-22309630(+) (11)	NA	Q9LV60	Cysteine-rich repeat secretory protein 55	AT5G48540.1	receptor-like protein kinase-related family protein 	LOC_Os03g16950.1	"cysteine-rich repeat secretory protein 55 precursor, putative, expressed"	Medtr7g046140.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202698.1.S1_at	A	A1TS	POPTR_0002s25130	POPTR_0002s25130 (11)	scaffold_2:22316905-22319066(-) (11)	NA	NA	NA	AT3G56860.5	UBP1-associated protein 2A 	NA	NA	Medtr7g104960.2	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202699.1.S1_at	A	A1TS	POPTR_0002s25160	POPTR_0002s25160 (11)	scaffold_2:22348568-22348714(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g045980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202700.1.S1_at	A	A1TS	POPTR_0002s25210	POPTR_0002s25210 (10)	scaffold_2:22367576-22368665(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202702.1.S1_at	A	A1TS	POPTR_0002s25320	POPTR_0002s25320 (11)	scaffold_2:22427913-22428888(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202703.1.S1_at	A	A1TS	POPTR_0002s25370	POPTR_0002s25370 (11)	scaffold_2:22451741-22452026(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202704.1.S1_at	A	A1TS	POPTR_0002s25380	POPTR_0002s25380 (11)	scaffold_2:22461075-22461356(+) (11)	NA	NA	NA	AT4G16295.1	S-protein homologue 1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202705.1.S1_at	A	A1TS	POPTR_0002s25410	POPTR_0002s25410 (11)	scaffold_2:22474632-22475479(-) (11)	NA	Q8GZM7	Transcription factor PIF1	AT2G20180.3	phytochrome interacting factor 3-like 5 	LOC_Os12g41650.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g118010.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.202706.1.S1_at	A	A1TS	POPTR_0002s25420	POPTR_0002s25420 (11)	scaffold_2:22489085-22490391(-) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.202707.1.S1_at	A	A1TS	POPTR_0002s25440	POPTR_0002s25440 (11)	scaffold_2:22497512-22498019(-) (11)	NA	NA	NA	AT5G26594.1	response regulator 24 	NA	NA	NA	NA	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.202709.1.S1_at	A	A1TS	POPTR_0002s25550	POPTR_0002s25550 (11)	scaffold_2:22608416-22609186(-) (11)	NA	Q9SVU0	Flavin-containing monooxygenase YUCCA8	AT4G28720.1	Flavin-binding monooxygenase family protein 	LOC_Os04g03980.1	"flavin monooxygenase, putative, expressed"	Medtr7g117800.1	"Monooxygenase, FAD-binding; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202710.1.S1_at	A	A1TS	POPTR_0002s25570	POPTR_0002s25570 (11)	scaffold_2:22657577-22658068(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT1G04150.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os02g57090.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202711.1.S1_at	A	A1TS	POPTR_0002s25580	POPTR_0002s25580 (11)	scaffold_2:22659436-22661060(-) (11)	NA	P50053	Ketohexokinase	AT4G28706.3	pfkB-like carbohydrate kinase family protein 	LOC_Os08g45180.1	"kinase, pfkB family, putative, expressed"	Medtr7g117720.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202712.1.S1_at	A	A1TS	POPTR_0002s25630	POPTR_0002s25630 (11)	scaffold_2:22718269-22718738(+) (11)	NA	O04161	Ammonium transporter 1 member 2	AT4G13510.1	ammonium transporter 1;1 	LOC_Os02g40730.1	"ammonium transporter protein, putative, expressed"	Medtr7g117370.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.202713.1.S1_at	A	A1TS	POPTR_0002s25640	POPTR_0002s25640 (11)	scaffold_2:22719740-22720219(-) (11)	NA	O04161	Ammonium transporter 1 member 2	AT4G13510.1	ammonium transporter 1;1 	LOC_Os02g40730.1	"ammonium transporter protein, putative, expressed"	Medtr7g117370.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.202714.1.S1_at	A	A1TS	POPTR_0002s25660	POPTR_0002s25660 (11)	scaffold_2:22728083-22728681(-) (11)	NA	NA	NA	AT2G20310.1	RPM1 interacting protein 13 	LOC_Os10g32850.1	hypothetical protein	Medtr7g117440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202715.1.S1_at	A	A1TS	POPTR_0002s25670	POPTR_0002s25670 (9)	scaffold_2:22753106-22756957(+) (10)	NA	NA	NA	AT2G20320.1	DENN (AEX-3) domain-containing protein 	LOC_Os03g05200.1	"DENN domain containing protein, expressed"	Medtr7g117470.1	DENN; uDENN 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202716.1.S1_at	A	A1TS	POPTR_0002s25700	POPTR_0002s25700 (11)	scaffold_2:22773656-22773709(+) (11)	NA	NA	NA	AT5G55690.1	MADS-box transcription factor family protein 	LOC_Os01g18420.1	OsMADS88 - MADS-box family gene with M-gamma type-box	Medtr6g005370.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.202716.1.S1_s_at	A	A2TS	POPTR_0002s25700	POPTR_0002s25700 (11)//POPTR_0012s11170 (11)	scaffold_12:11722616-11722959(-) (11)//scaffold_2:22773299-22773642(+) (11)	NA	NA	NA	AT5G55690.1	MADS-box transcription factor family protein 	LOC_Os01g18420.1	OsMADS88 - MADS-box family gene with M-gamma type-box	Medtr6g005370.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.202718.1.S1_at	A	A1TS	POPTR_0002s25710	POPTR_0002s25710 (11)	scaffold_2:22804421-22805011(+) (11)	NA	Q7GB25	ABC transporter C family member 5	AT1G04120.1	multidrug resistance-associated protein 5 	LOC_Os03g04920.1	"multidrug resistance-associated protein, putative, expressed"	Medtr7g117090.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.202719.1.S1_at	A	A1TS	POPTR_0002s25730	POPTR_0002s25730 (11)	scaffold_2:22808122-22813890(+) (11)	NA	NA	NA	AT1G08390.1	unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57180.2	"NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202722.1.S1_at	A	A1TS	POPTR_0002s25770	POPTR_0002s25770 (11)	scaffold_2:22838852-22839379(-) (11)	NA	P09520	Movement protein	NA	NA	NA	NA	Medtr6g083560.1	Tobamoviral movement protein; Ribosomal protein L9 N-terminal-like 	GO:0006810|transport	GO:0003676|nucleic acid binding	NA
PtpAffx.202723.1.S1_at	A	A1TS	POPTR_0002s25780	POPTR_0002s25780 (11)	scaffold_2:22841600-22841925(+) (11)	NA	NA	NA	AT2G20362.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr7g117080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202724.1.S1_at	A	A1TS	POPTR_0002s25790	POPTR_0002s25790 (11)	scaffold_2:22854738-22855262(+) (11)	NA	Q7XJ98	Xyloglucan galactosyltransferase KATAMARI1	AT2G20370.1	Exostosin family protein 	LOC_Os03g05110.1	"xyloglucan galactosyltransferase KATAMARI1, putative, expressed"	Medtr7g117070.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.202725.1.S1_at	A	A1TS	POPTR_0002s25800	POPTR_0002s25800 (11)	scaffold_2:22861985-22862541(+) (11)	NA	O65351	Subtilisin-like protease	AT1G04110.1	Subtilase family protein 	LOC_Os03g04950.1	"OsSub26 - Putative Subtilisin homologue, expressed"	Medtr7g117060.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.202726.1.S1_at	A	A1TS	POPTR_0002s25820	POPTR_0002s25820 (11)	scaffold_2:22869815-22870483(+) (11)	NA	Q9M0G7	Leucine-rich repeat receptor-like protein kinase PXL2	AT4G28650.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os02g02140.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr7g117050.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.202727.1.S1_at	A	A1MS	POPTR_0002s25860	POPTR_0002s25860 (11)	scaffold_2:22885671-22886187(-) (11)	NA	NA	NA	AT3G04350.1	Plant protein of unknown function (DUF946) 	LOC_Os03g04930.2	expressed protein	Medtr5g007960.1	"Protein of unknown function DUF946, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202728.1.S1_at	A	A1TS	POPTR_0002s25870	POPTR_0002s25870 (11)	scaffold_2:22890774-22891310(+) (11)	NA	NA	NA	AT1G04530.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04710.2	expressed protein	Medtr7g117700.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202729.1.S1_at	A	A1TS	POPTR_0002s25910	POPTR_0002s25910 (11)	scaffold_2:22920807-22921381(-) (11)	NA	Q6NM73	Cysteine-rich repeat secretory protein 3	AT1G04520.1	plasmodesmata-located protein 2 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr1g087250.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202730.1.S1_s_at	A	A1TS	POPTR_0002s25920	POPTR_0002s25920 (11)	scaffold_2:22934402-22935528(+) (11)	NA	Q9FNC7	Histone-lysine N-methyltransferase SUVR2	AT5G43990.4	SET-domain containing protein lysine methyltransferase family protein 	LOC_Os02g40770.2	"SET domain containing protein, expressed"	Medtr7g116840.1	Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.202732.1.S1_s_at	A	A3TS	POPTR_0002s25980	POPTR_0002s25980 (11)//POPTR_0002s25990 (11)//POPTR_0002s26010 (11)	scaffold_2:22963225-22963434(-) (11)//scaffold_2:22981632-22981841(-) (11)//scaffold_2:22997253-22997462(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g116690.1	"Leucine-rich repeat, typical subtype "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.202734.1.S1_at	A	A1TS	POPTR_0002s25960	POPTR_0002s25960 (10)	scaffold_2:22950415-22954396(+) (10)	NA	Q9SAK5	Myb family transcription factor APL	AT4G28610.1	phosphate starvation response  1 	LOC_Os07g25710.3	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202735.1.S1_at	A	A1TS	POPTR_0002s26000	POPTR_0002s26000 (11)	scaffold_2:22986889-22987796(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202736.1.S1_at	A	A1TS	POPTR_0002s26020	POPTR_0002s26020 (11)	scaffold_2:23014572-23015058(-) (11)	NA	NA	NA	AT1G04030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1); Has 1835 Blast hits to 1511 proteins in 238 species: Archae - 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants - 187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink). 	LOC_Os04g43230.1	expressed protein	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.202737.1.S1_at	A	A1TS	POPTR_0002s26030	POPTR_0002s26030 (11)	scaffold_2:23021171-23022150(+) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT4G14300.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os10g33230.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g105300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.202738.1.S1_at	A	A1TS	POPTR_0002s26040	POPTR_0002s26040 (11)	scaffold_2:23037109-23037628(+) (11)	NA	Q9FNL7	Peptide transporter PTR3-A	AT5G46050.1	peptide transporter 3 	LOC_Os10g33210.1	"peptide transporter PTR3-A, putative, expressed"	Medtr7g116580.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.202739.1.S1_at	A	A1TS	POPTR_0002s26050	POPTR_0002s26050 (11)	scaffold_2:23047536-23047735(+) (11)	NA	Q56X05	Pentatricopeptide repeat-containing protein At1g06145	AT1G06150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g44299.1	"pentatricopeptide, putative"	Medtr8g077580.1	Asp/Glu racemase 	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.202739.1.S1_s_at	A	A2TS	POPTR_0002s26050	POPTR_0002s26050 (11)//POPTR_0002s26060 (11)	scaffold_2:23047229-23047616(+) (11)//scaffold_2:23051784-23052171(+) (11)	NA	Q56X05	Pentatricopeptide repeat-containing protein At1g06145	AT1G06150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g44299.1	"pentatricopeptide, putative"	Medtr8g077580.1	Asp/Glu racemase 	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.202740.1.S1_at	A	A1TS	POPTR_0002s26060	POPTR_0002s26060 (11)	scaffold_2:23047831-23052498(+) (11)	NA	Q9FNL7	Peptide transporter PTR3-A	AT5G46050.1	peptide transporter 3 	LOC_Os10g33210.1	"peptide transporter PTR3-A, putative, expressed"	Medtr7g116580.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.202741.1.S1_at	A	A1TS	POPTR_0002s26070	POPTR_0002s26070 (11)	scaffold_2:23053255-23054415(-) (11)	NA	Q8RXD4	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog	AT1G04020.2	breast cancer associated RING 1 	LOC_Os04g43300.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr7g116590.1	BRCA1 	NA	NA	GO:0005622|intracellular
PtpAffx.202742.1.S1_at	A	A1TS	POPTR_0002s26070	POPTR_0002s26070 (10)	scaffold_2:23057043-23058325(-) (10)	NA	Q8RXD4	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog	AT1G04020.2	breast cancer associated RING 1 	LOC_Os04g43300.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr7g116590.1	BRCA1 	NA	NA	GO:0005622|intracellular
PtpAffx.202743.1.S1_at	A	A1TS	POPTR_0002s26080	POPTR_0002s26080 (11)	scaffold_2:23059890-23060902(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202744.1.S1_at	A	A1TS	POPTR_0002s26090	POPTR_0002s26090 (11)	scaffold_2:23063802-23063908(-) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os06g21340.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr8g147730.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
PtpAffx.202744.1.S1_s_at	A	A1TS	POPTR_0002s26090	POPTR_0002s26090 (11)	scaffold_2:23063765-23064451(-) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os06g21340.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr8g147730.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
PtpAffx.202745.1.S1_at	A	A1TS	POPTR_0002s26100	POPTR_0002s26100 (10)	scaffold_2:23072423-23072596(-) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT4G28600.1	no pollen germination related 2 	LOC_Os10g33290.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g090090.2	"NPGR2 ; calmodulin binding ta, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202746.1.S1_at	A	A1MS	POPTR_0002s26130	POPTR_0002s26130 (10)	scaffold_2:23099568-23100109(-) (11)	NA	B5WWZ9	Long-chain-alcohol oxidase FAO2	AT4G28570.1	Long-chain fatty alcohol dehydrogenase family protein 	LOC_Os10g33540.1	"alcohol oxidase, putative, expressed"	Medtr1g090220.1	Glucose-methanol-choline oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.202747.1.S1_at	A	A1TS	POPTR_0002s26140	POPTR_0002s26140 (11)	scaffold_2:23105923-23106477(-) (11)	NA	Q2TE74	Glutathione gamma-glutamylcysteinyltransferase 2	AT5G44070.1	phytochelatin synthase 1 (PCS1) 	LOC_Os05g34290.1	"glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202749.1.S1_at	A	A1TS	POPTR_0002s26180	POPTR_0002s26180 (11)	scaffold_2:23193760-23195638(-) (11)	NA	Q5ZIZ4	Cytosolic purine 5'-nucleotidase	AT1G75210.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os03g56310.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr5g089940.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202750.1.S1_at	A	A1TS	POPTR_0002s26200	POPTR_0002s26200 (11)	scaffold_2:23205605-23206409(+) (11)	NA	NA	NA	AT1G47330.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g03430.1	"CBS domain containing protein, expressed"	Medtr2g010580.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202751.1.S1_at	A	A1TS	POPTR_0002s26220	POPTR_0002s26220 (11)	scaffold_2:23217098-23217657(+) (11)	NA	Q9LN50	Probable methyltransferase PMT28	AT1G19430.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g56390.1	"tRNA wybutosine-synthesizing protein 1, putative, expressed"	Medtr4g143020.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0010181|FMN binding||GO:0008168|methyltransferase activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.202752.1.S1_at	A	A1TS	POPTR_0002s26230	POPTR_0002s26230 (10)	scaffold_2:23222308-23222623(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202753.1.S1_at	A	A1TS	POPTR_0002s26240	POPTR_0002s26240 (11)	scaffold_2:23233008-23235182(+) (11)	NA	NA	NA	AT1G75180.3	Erythronate-4-phosphate dehydrogenase family protein 	LOC_Os03g56420.1	expressed protein	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202754.1.S1_at	A	A1TS	POPTR_0002s26260	POPTR_0002s26260 (11)	scaffold_2:23241120-23241988(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g20930.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202755.1.S1_at	A	A1TS	POPTR_0002s26280	POPTR_0002s26280 (11)	scaffold_2:23263047-23263256(+) (11)	NA	NA	NA	AT5G42710.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g56430.1	expressed protein	Medtr4g154410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202756.1.S1_at	A	A1TS	POPTR_0002s26300	POPTR_0002s26300 (11)	scaffold_2:23274698-23277815(+) (11)	NA	P34795	"Glucose-6-phosphate isomerase, cytosolic"	AT5G42740.1	Sugar isomerase (SIS) family protein 	LOC_Os06g14510.3	"glucose-6-phosphate isomerase, putative, expressed"	Medtr6g009990.1	Phosphoglucose isomerase (PGI) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202758.1.S1_at	A	A1TS	POPTR_0002s26310	POPTR_0002s26310 (11)	scaffold_2:23313917-23314326(+) (11)	NA	NA	NA	AT5G42950.1	GYF domain-containing protein 	LOC_Os07g04530.1	"GYF domain containing protein, putative, expressed"	Medtr7g017760.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202758.1.S1_s_at	A	A1TS	POPTR_0002s26310	POPTR_0002s26310 (11)	scaffold_2:23313664-23314401(+) (11)	NA	NA	NA	AT5G42950.1	GYF domain-containing protein 	LOC_Os07g04530.1	"GYF domain containing protein, putative, expressed"	Medtr7g017760.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202759.1.S1_s_at	A	A1TS	POPTR_0002s26320	POPTR_0002s26320 (11)	scaffold_2:23316213-23316774(-) (11)	NA	NA	NA	AT1G75160.1	Protein of unknown function (DUF620) 	LOC_Os01g55795.1	expressed protein	Medtr5g019760.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202760.1.S1_at	A	A1TS	POPTR_0002s26440	POPTR_0002s26440 (11)	scaffold_2:23420103-23420358(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202761.1.S1_s_at	A	A1TS	POPTR_0002s26650	POPTR_0002s26650 (11)	scaffold_2:23549585-23549894(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202763.1.S1_at	A	A1TS	POPTR_0002s26660	POPTR_0002s26660 (11)	scaffold_2:23553438-23554021(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202766.1.S1_x_at	A	A1TS	POPTR_0003s00210	POPTR_0003s00210 (10)	scaffold_3:41008-41231(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.202767.1.S1_at	A	A1TS	POPTR_0003s00220	POPTR_0003s00220 (10)	scaffold_3:45625-45753(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.202774.1.S1_at	A	A1TS	POPTR_0015s03600	POPTR_0015s03600 (11)	scaffold_15:3360597-3361245(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202775.1.S1_s_at	A	A2TS	POPTR_0003s00430	POPTR_0003s00430 (11)//POPTR_0003s00440 (11)	scaffold_3:194776-195014(+) (11)//scaffold_3:210901-211139(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.202776.1.S1_at	A	A1TS	POPTR_0003s00460	POPTR_0003s00460 (11)	scaffold_3:244956-245309(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.202777.1.S1_at	A	A1TS	POPTR_0003s00470	POPTR_0003s00470 (11)	scaffold_3:252147-252491(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.202778.1.S1_at	A	A1TS	POPTR_0003s00490	POPTR_0003s00490 (9)	scaffold_3:282544-282714(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202779.1.S1_at	A	A1TS	POPTR_0003s01030	POPTR_0003s01030 (11)	scaffold_3:896712-897020(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20278.2.A1_s_at	A	A1TS	POPTR_0018s09020	POPTR_0018s09020 (11)	scaffold_18:9894214-9895650(-) (11)	NA	O82480	Rac-like GTP-binding protein ARAC7	AT4G28950.1	RHO-related protein from plants 9 	LOC_Os05g43820.3	"ras-related protein, putative, expressed"	Medtr6g099230.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.202780.1.S1_s_at	A	A1TS	POPTR_0003s01040	POPTR_0003s01040 (11)	scaffold_3:917484-918009(-) (11)	NA	Q8W3M7	Uncharacterized membrane protein At4g06598	AT1G58110.2	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os12g09250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202782.1.S1_at	A	A1TS	POPTR_0003s01080	POPTR_0003s01080 (11)	scaffold_3:949337-949532(-) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT4G20020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast hits to 16023 proteins in 1033 species: Archae - 4; Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants - 3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI BLink). 	LOC_Os11g11020.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g006280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202783.1.S1_at	A	A1TS	POPTR_0003s01080	POPTR_0003s01080 (11)	scaffold_3:949932-950412(-) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT4G20020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast hits to 16023 proteins in 1033 species: Archae - 4; Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants - 3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI BLink). 	LOC_Os11g11020.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g006280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202784.1.S1_at	A	A1TS	POPTR_0003s01110	POPTR_0003s01110 (11)	scaffold_3:969519-973142(+) (11)	NA	Q9C958	Serine/threonine-protein kinase SRK2B	AT1G60940.2	SNF1-related protein kinase 2.10 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202784.1.S1_x_at	A	A1TS	POPTR_0003s01110	POPTR_0003s01110 (11)	scaffold_3:969334-973142(+) (11)	NA	Q9C958	Serine/threonine-protein kinase SRK2B	AT1G60940.2	SNF1-related protein kinase 2.10 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202785.1.S1_s_at	A	A1TS	POPTR_0003s01130	POPTR_0003s01130 (11)	scaffold_3:983540-983890(-) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.202788.1.S1_at	A	A1TS	POPTR_0003s01150	POPTR_0003s01150 (10)	scaffold_3:1006855-1007735(-) (10)	NA	P61422	Bifunctional protein thiED	AT1G22940.1	"thiamin biosynthesis protein, putative "	LOC_Os12g09000.1	"phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed"	Medtr2g006150.1	Thiamine monophosphate synthase; Phosphomethylpyrimidine kinase; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0019438|aromatic compound biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process	GO:0004789|thiamin-phosphate diphosphorylase activity	NA
PtpAffx.202789.1.S1_s_at	A	A1TS	POPTR_0003s01160	POPTR_0003s01160 (11)	scaffold_3:1028669-1029476(+) (11)	NA	Q8L840	ATP-dependent DNA helicase Q-like 4A	AT1G10930.1	DNA helicase (RECQl4A) 	LOC_Os04g35420.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr2g006260.1	ATP-requiring DNA helicase RecQ; HRDC-like; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003676|nucleic acid binding||GO:0043140|ATP-dependent 3'-5' DNA helicase activity||GO:0005524|ATP binding	GO:0005622|intracellular
PtpAffx.202793.1.S1_at	A	A1TS	POPTR_0074s00250	POPTR_0074s00250 (11)	scaffold_3:1048175-1053942(-) (9)//scaffold_3:1063780-1074235(-) (9)//scaffold_3:1073421-1083105(-) (9)//scaffold_74:40840-41675(+) (10)//scaffold_74:68172-69012(+) (11)	POPTR_0003s01210 (7)//POPTR_0003s01230 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202794.1.S1_at	A	A1TS	POPTR_0003s01250	POPTR_0003s01250 (11)	scaffold_3:1095780-1096223(-) (11)	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.1	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202795.1.S1_at	A	A1TS	POPTR_0003s01250	POPTR_0003s01250 (11)	scaffold_3:1099544-1100322(-) (11)	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.1	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202796.1.S1_at	A	A1TS	POPTR_0003s01260	POPTR_0003s01260 (11)	scaffold_3:1117977-1118473(-) (11)	NA	NA	NA	AT1G22030.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g65420.1	expressed protein	Medtr4g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202797.1.S1_at	A	A1TS	POPTR_0003s01280	POPTR_0003s01280 (11)	scaffold_3:1134051-1136173(-) (11)	NA	Q6P5E4	UDP-glucose:glycoprotein glucosyltransferase 1	AT1G71220.2	"UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups "	LOC_Os02g44510.1	"UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed"	Medtr2g007060.1	UDP-glucose:Glycoprotein Glucosyltransferase 	GO:0006486|protein amino acid glycosylation	GO:0003980|UDP-glucose:glycoprotein glucosyltransferase activity	NA
PtpAffx.202798.1.S1_at	A	A1TS	POPTR_0003s01280	POPTR_0003s01280 (10)	scaffold_3:1140048-1143635(-) (10)	NA	Q6P5E4	UDP-glucose:glycoprotein glucosyltransferase 1	AT1G71220.2	"UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups "	LOC_Os02g44510.1	"UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed"	Medtr2g007060.1	UDP-glucose:Glycoprotein Glucosyltransferase 	GO:0006486|protein amino acid glycosylation	GO:0003980|UDP-glucose:glycoprotein glucosyltransferase activity	NA
PtpAffx.202799.1.S1_at	A	A1TS	POPTR_0003s01280	POPTR_0003s01280 (10)	scaffold_3:1144965-1146639(-) (11)	NA	Q6P5E4	UDP-glucose:glycoprotein glucosyltransferase 1	AT1G71220.2	"UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups "	LOC_Os02g44510.1	"UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed"	Medtr2g007060.1	UDP-glucose:Glycoprotein Glucosyltransferase 	GO:0006486|protein amino acid glycosylation	GO:0003980|UDP-glucose:glycoprotein glucosyltransferase activity	NA
PtpAffx.202800.1.S1_at	A	A1TS	POPTR_0003s01280	POPTR_0003s01280 (11)	scaffold_3:1152971-1154706(-) (11)	NA	Q6P5E4	UDP-glucose:glycoprotein glucosyltransferase 1	AT1G71220.2	"UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups "	LOC_Os02g44510.1	"UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed"	Medtr2g007060.1	UDP-glucose:Glycoprotein Glucosyltransferase 	GO:0006486|protein amino acid glycosylation	GO:0003980|UDP-glucose:glycoprotein glucosyltransferase activity	NA
PtpAffx.202802.1.S1_at	A	A1TS	POPTR_0003s01340	POPTR_0003s01340 (9)	scaffold_3:1174958-1175545(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202805.1.S1_at	A	A1TS	POPTR_0003s01410	POPTR_0003s01410 (11)	scaffold_3:1232901-1233401(+) (11)	NA	P39540	Elongation of fatty acids protein 1	AT3G06470.1	GNS1/SUR4 membrane protein family 	LOC_Os03g49480.1	"elongation of fatty acids protein 2, putative, expressed"	Medtr7g139530.1	GNS1/SUR4 membrane protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.202806.1.S1_at	A	A1TS	POPTR_0003s01420	POPTR_0003s01420 (11)	scaffold_3:1290467-1290954(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140360.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.202807.1.S1_s_at	A	A3TS	POPTR_0004s13550	POPTR_0005s22270 (11)//POPTR_0004s13550 (11)//POPTR_0133s00250 (11)	scaffold_133:117474-117573(-) (11)//scaffold_4:92103-92195(+) (10)//scaffold_4:13881532-13881631(-) (11)//scaffold_5:21243233-21243332(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202808.1.S1_at	A	A1TS	POPTR_0003s01490	POPTR_0003s01490 (10)	scaffold_3:1357321-1357898(+) (10)	NA	O48788	Probable inactive receptor kinase At2g26730	AT2G26730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21510.3	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr2g008790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.202809.1.S1_at	A	A1TS	POPTR_0003s01500	POPTR_0003s01500 (11)	scaffold_3:1362883-1366177(+) (11)	NA	Q9LU85	"Probable plastid-lipid-associated protein 4, chloroplastic"	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os03g49720.1	"PAP fibrillin family domain containing protein, expressed"	Medtr2g007790.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.20281.1.S1_at	A	A1TS	POPTR_0014s06630	POPTR_0014s06630 (10)	scaffold_14:5037119-5037496(+) (10)	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g106900.1	"Protein of unknown function DUF1981, SEC7 associated "	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.202810.1.S1_at	A	A1TS	POPTR_0003s01510	POPTR_0003s01510 (9)	scaffold_3:1370466-1374153(+) (9)	NA	Q8BJ56	Patatin-like phospholipase domain-containing protein 2	AT1G33270.1	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 	LOC_Os11g34370.1	"phospholipase, patatin family, putative, expressed"	Medtr2g007800.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.202811.1.S1_at	A	A1TS	POPTR_0003s01525	POPTR_0003s01525 (11)	scaffold_3:1384298-1384500(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202812.1.S1_at	A	A1TS	POPTR_0003s01540	POPTR_0003s01540 (11)	scaffold_3:1393800-1396414(+) (11)	NA	NA	NA	AT5G24750.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g11940.1	"sterol glucosyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202813.1.S1_at	A	A2TS	POPTR_0003s01550	POPTR_0133s00210 (11)//POPTR_0003s01550 (11)	scaffold_133:14841-15402(+) (11)//scaffold_3:1411714-1412275(-) (11)	NA	O80722	Pectinesterase 4	AT2G47030.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os04g38560.1	"pectinesterase, putative, expressed"	Medtr1g105940.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.202815.1.S1_at	A	A1TS	POPTR_0003s01560	POPTR_0003s01560 (11)	scaffold_3:1423883-1424851(+) (11)	NA	P28656	Nucleosome assembly protein 1-like 1	AT2G19480.3	nucleosome assembly protein 1;2 	LOC_Os05g46230.1	"NAP domain containing protein, putative, expressed"	Medtr2g046220.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.202816.1.S1_at	A	A1TS	POPTR_0003s01580	POPTR_0003s01580 (11)	scaffold_3:1439609-1440159(+) (11)	NA	Q9SMY6	Putative pectinesterase/pectinesterase inhibitor 45	AT4G33230.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os04g38560.1	"pectinesterase, putative, expressed"	Medtr1g105930.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.202817.1.S1_at	A	A1TS	POPTR_0003s01610	POPTR_0003s01610 (11)	scaffold_3:1450553-1451256(+) (11)	NA	P33144	Separin	AT4G22970.1	homolog of separase 	LOC_Os02g53120.1	"Peptidase family C50, putative, expressed"	Medtr2g007920.1	"Peptidase C50, separase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	GO:0005634|nucleus
PtpAffx.202818.1.S1_at	A	A1TS	POPTR_0003s01610	POPTR_0003s01610 (11)	scaffold_3:1454353-1456158(+) (11)	NA	P33144	Separin	AT4G22970.1	homolog of separase 	LOC_Os02g53120.1	"Peptidase family C50, putative, expressed"	Medtr2g007920.1	"Peptidase C50, separase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	GO:0005634|nucleus
PtpAffx.202819.1.S1_at	A	A1TS	POPTR_0003s01610	POPTR_0003s01610 (11)	scaffold_3:1464059-1464728(+) (11)	NA	P33144	Separin	AT4G22970.1	homolog of separase 	LOC_Os02g53120.1	"Peptidase family C50, putative, expressed"	Medtr2g007920.1	"Peptidase C50, separase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	GO:0005634|nucleus
PtpAffx.20282.1.A1_at	A	A1MS	POPTR_0012s12840	POPTR_0012s12840 (11)	scaffold_12:13233265-13233725(-) (11)	NA	Q5RCE6	Ribosomal L1 domain-containing protein 1	AT3G58660.1	Ribosomal protein L1p/L10e family 	LOC_Os05g48422.1	"60S ribosomal protein-related, putative, expressed"	Medtr2g076720.1	Ribosomal protein L1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202821.1.S1_at	A	A1MS	POPTR_0003s01650	POPTR_0003s01650 (9)	scaffold_3:1521905-1522969(+) (11)	NA	P43255	COP9 signalosome complex subunit 8	AT4G14110.1	"COP9 signalosome, subunit CSN8 "	LOC_Os04g34930.1	"COP9 signalosome complex subunit 8, putative, expressed"	Medtr2g007990.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202822.1.S1_at	A	A1TS	POPTR_0003s01660	POPTR_0003s01660 (11)	scaffold_3:1531482-1532503(+) (11)	NA	Q9NDJ2	Helicase domino	AT3G12810.1	SNF2 domain-containing protein / helicase domain-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202824.1.S1_at	A	A1TS	POPTR_0003s01680	POPTR_0003s01680 (11)	scaffold_3:1547103-1547369(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202824.1.S1_x_at	A	A1TS	POPTR_0003s01680	POPTR_0003s01680 (11)	scaffold_3:1547071-1547388(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202825.1.S1_at	A	A1TS	POPTR_0003s01700	POPTR_0003s01700 (11)	scaffold_3:1551107-1552494(-) (11)	NA	Q8LKW0	Telomerase reverse transcriptase	AT5G16850.1	telomerase reverse transcriptase 	LOC_Os12g19549.1	"telomerase reverse transcriptase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006278|RNA-dependent DNA replication	GO:0003964|RNA-directed DNA polymerase activity||GO:0003723|RNA binding	NA
PtpAffx.202826.1.S1_at	A	A1TS	POPTR_0003s01720	POPTR_0003s01720 (11)	scaffold_3:1571834-1572372(-) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT5G64530.1	xylem NAC domain 1 	LOC_Os04g35660.1	"no apical meristem protein, putative, expressed"	Medtr4g142900.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.202827.1.S1_at	A	A1TS	POPTR_0003s01740	POPTR_0003s01740 (11)	scaffold_3:1612332-1613919(+) (11)	NA	Q94F62	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	AT4G33430.1	BRI1-associated receptor kinase 	LOC_Os08g07760.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g008510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.202828.1.S1_at	A	A1TS	POPTR_0649s00200	POPTR_0649s00200 (11)	scaffold_649:5046-5622(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202829.1.S1_at	A	A1TS	POPTR_0003s01760	POPTR_0003s01760 (11)	scaffold_3:1640761-1641698(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202831.1.S1_at	A	A1TS	POPTR_0003s01840	POPTR_0003s01840 (11)	scaffold_3:1705336-1705430(-) (11)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.2	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.1	"ATPase, E1-E2 type "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.202832.1.S1_at	A	A1TS	POPTR_0003s01870	POPTR_0003s01870 (11)	scaffold_3:1741968-1742523(-) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G02645.1	Plant protein of unknown function (DUF247) 	LOC_Os06g08120.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g015670.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202834.1.S1_at	A	A3TS	POPTR_0003s01880	POPTR_0003s01950 (11)//POPTR_0003s01880 (11)//POPTR_0003s01940 (10)	scaffold_3:1755123-1755340(-) (11)//scaffold_3:1817666-1817883(-) (10)//scaffold_3:1837712-1837929(-) (11)	POPTR_0003s01920 (8)	Q4U4N4	Interferon-induced GTP-binding protein Mx2	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.202836.1.S1_x_at	A	A1TS	POPTR_0003s01960	POPTR_0003s01960 (10)	scaffold_3:1858699-1860297(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202839.1.S1_x_at	A	A3TS	POPTR_0027s00490	POPTR_0027s00490 (11)//POPTR_0014s00450 (9)//POPTR_0003s02010 (9)	scaffold_14:364950-365005(+) (9)//scaffold_27:378550-378689(+) (11)//scaffold_3:1929962-1930088(-) (10)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039400.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.202840.1.S1_at	A	A1TS	POPTR_0027s00480	POPTR_0027s00480 (9)	scaffold_27:353554-361251(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202843.1.S1_x_at	A	A1TS	POPTR_0011s01760	POPTR_0011s01760 (11)	scaffold_11:1375045-1375504(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os12g17410.1	NB-ARC domain containing protein	Medtr4g012320.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.202845.1.S1_at	A	A1TS	POPTR_0027s00380	POPTR_0027s00380 (11)	scaffold_27:185600-185986(-) (11)	NA	NA	NA	AT4G34138.1	UDP-glucosyl transferase 73B1 	NA	NA	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202847.1.S1_at	A	A1TS	POPTR_0027s00360	POPTR_0027s00360 (11)	scaffold_27:164677-165136(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202847.1.S1_x_at	A	A1TS	POPTR_0027s00360	POPTR_0027s00360 (11)	scaffold_27:164677-165134(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202850.1.S1_at	A	A1TS	POPTR_0027s00210	POPTR_0027s00210 (11)	scaffold_27:13286-13777(-) (11)	NA	NA	NA	AT3G19190.1	autophagy 2 	NA	NA	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202851.1.S1_s_at	A	A1TS	POPTR_0018s14195	POPTR_0018s14195 (9)	scaffold_18:14480194-14480231(+) (9)//scaffold_18:14627435-14627472(-) (9)//scaffold_19:2727856-2727893(-) (9)//scaffold_516:12811-12848(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr2g041750.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202853.1.S1_at	A	A1TS	POPTR_0003s04250	POPTR_0003s04250 (9)	scaffold_3:4973429-4974185(+) (9)	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202854.1.S1_at	A	A1TS	POPTR_0003s04240	POPTR_0003s04240 (11)	scaffold_3:4956160-4956281(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT1G72670.1	IQ-domain 8 	LOC_Os01g09790.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g139750.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202854.1.S1_s_at	A	A1TS	POPTR_0003s04240	POPTR_0003s04240 (11)	scaffold_3:4955710-4956119(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT1G72670.1	IQ-domain 8 	LOC_Os01g09790.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g139750.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202855.1.S1_at	A	A1TS	POPTR_0003s04230	POPTR_0003s04230 (11)	scaffold_3:4944539-4945150(+) (11)	NA	NA	NA	AT2G26190.1	calmodulin-binding family protein 	LOC_Os03g25760.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202855.1.S1_s_at	A	A1TS	POPTR_0003s04230	POPTR_0003s04230 (11)	scaffold_3:4944986-4946122(+) (11)	NA	NA	NA	AT2G26190.1	calmodulin-binding family protein 	LOC_Os03g25760.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202856.1.S1_s_at	A	A2TS	POPTR_0019s02795	POPTR_0019s02795 (11)//POPTR_0003s04230 (10)	scaffold_19:2620947-2621213(+) (11)//scaffold_3:4946621-4946887(+) (11)	NA	NA	NA	AT5G57010.1	calmodulin-binding family protein 	LOC_Os05g10840.2	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202857.1.S1_at	A	A1TS	POPTR_0003s04180	POPTR_0003s04180 (11)	scaffold_3:4888541-4888641(-) (11)	NA	Q9SGG3	Putative phospholipid-transporting ATPase 5	AT1G72700.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g36990.1	"phospholipid-transporting ATPase 4, putative, expressed"	Medtr2g120840.1	"ATPase, E1-E2 type "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.202857.1.S1_s_at	A	A1TS	POPTR_0003s04180	POPTR_0003s04180 (11)	scaffold_3:4888693-4889750(-) (11)	POPTR_0001s20440 (6)	Q9SGG3	Putative phospholipid-transporting ATPase 5	AT1G72700.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g36990.1	"phospholipid-transporting ATPase 4, putative, expressed"	Medtr2g120840.1	"ATPase, E1-E2 type "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.202858.1.S1_at	A	A1TS	POPTR_0003s04130	POPTR_0003s04130 (11)	scaffold_3:4790259-4790770(-) (11)	NA	P32897	Mitochondrial import inner membrane translocase subunit TIM23	AT1G17530.1	translocase of inner mitochondrial membrane 23 	LOC_Os03g02390.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr8g021830.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.202859.1.S1_at	A	A1TS	POPTR_0003s04120	POPTR_0003s04120 (11)	scaffold_3:4778873-4779419(+) (11)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202860.1.S1_at	A	A1TS	POPTR_0003s04050	POPTR_0003s04050 (11)	scaffold_3:4688868-4690028(-) (11)	NA	P09122	DNA polymerase III subunit gamma/tau	AT2G02480.1	AAA-type ATPase family protein 	LOC_Os12g10670.1	"AAA-type ATPase family protein, putative, expressed"	Medtr2g021690.1	"AAA ATPase; DNA polymerase III clamp loader subunit, C-terminal "	NA	GO:0005524|ATP binding	NA
PtpAffx.202861.1.S1_at	A	A1TS	POPTR_0003s04030	POPTR_0003s04030 (11)	scaffold_3:4670743-4671282(-) (11)	NA	NA	NA	AT3G21320.1	BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G25930.1); Has 63 Blast hits to 58 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os06g05060.1	"ELF3 protein, putative, expressed"	Medtr3g140450.1	"early flowering 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202863.1.S1_at	A	A1TS	POPTR_0003s03970	POPTR_0003s03970 (10)	scaffold_3:4594866-4595451(+) (11)	NA	P59278	Uncharacterized protein At1g51745	AT3G21295.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os01g37790.1	expressed protein	Medtr5g008090.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202864.1.S1_at	A	A1TS	POPTR_0003s03950	POPTR_0003s03950 (11)	scaffold_3:4536945-4537358(-) (11)	NA	Q9FVX2	"Pentatricopeptide repeat-containing protein At1g77360, mitochondrial"	AT1G77360.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g44030.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g086640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202866.1.S1_at	A	A1TS	POPTR_0003s03750	POPTR_0003s03750 (11)	scaffold_3:4432530-4433049(-) (11)	NA	NA	NA	AT5G45320.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os06g49650.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g025810.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.202868.1.S1_x_at	A	A1TS	POPTR_0003s03730	POPTR_0003s03730 (11)	scaffold_3:4411169-4411377(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202869.1.S1_at	A	A1TS	POPTR_0003s03710	POPTR_0003s03710 (11)	scaffold_3:4387517-4388170(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g46400.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20287.1.S1_at	A	A1TS	POPTR_0001s09450	POPTR_0001s09450 (11)	scaffold_1:7217291-7217887(+) (11)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47080.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.202871.1.S1_at	A	A1TS	POPTR_0003s03700	POPTR_0003s03700 (11)	scaffold_3:4368632-4369820(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.202873.1.S1_at	A	A1TS	POPTR_0003s03670	POPTR_0003s03670 (11)	scaffold_3:4271778-4272337(-) (11)	NA	Q9FIW5	Putative NAC domain-containing protein 94	AT2G02450.2	NAC domain containing protein 35 	LOC_Os01g66490.1	"no apical meristem protein, putative, expressed"	Medtr5g043830.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.202874.1.S1_at	A	A1TS	POPTR_0003s03650	POPTR_0003s03650 (11)	scaffold_3:4169907-4170389(+) (11)	NA	Q9C6W5	ABC transporter G family member 14	AT1G31770.1	ATP-binding cassette 14 	LOC_Os08g07010.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.202875.1.S1_at	A	A1TS	POPTR_0751s00200	POPTR_0751s00200 (11)	scaffold_751:7047-7619(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202878.1.S1_s_at	A	A1TS	POPTR_0003s06690	POPTR_0003s06690 (11)	scaffold_3:8221343-8221647(+) (11)	NA	NA	NA	AT1G72390.1	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). 	LOC_Os10g25200.1	expressed protein	Medtr8g025570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202880.1.S1_at	A	A1TS	POPTR_0003s06660	POPTR_0003s06660 (11)	scaffold_3:8173235-8173787(-) (11)	NA	Q3E991	Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690	AT3G42880.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g09860.1	expressed protein	Medtr8g132720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.202881.1.S1_s_at	A	A1TS	POPTR_0001s16660	POPTR_0001s16660 (11)	scaffold_1:13444285-13444630(+) (11)	POPTR_0003s06650 (8)	O54922	Exocyst complex component 7	AT1G72470.1	exocyst subunit exo70 family protein D1 	LOC_Os08g35470.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr8g109240.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.202882.1.S1_at	A	A1TS	POPTR_0003s06620	POPTR_0003s06620 (11)	scaffold_3:8144643-8145346(+) (11)	NA	NA	NA	AT1G72490.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os07g42290.1	expressed protein	Medtr8g025330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202887.1.S1_at	A	A1TS	POPTR_0003s06450	POPTR_0003s06450 (11)	scaffold_3:7930944-7931676(+) (11)	NA	Q9CAH1	Putative receptor-like protein kinase At1g72540	AT2G05940.1	Protein kinase superfamily protein 	LOC_Os10g25550.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr8g025080.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202888.1.S1_at	A	A1TS	POPTR_0003s06380	POPTR_0003s06380 (11)	scaffold_3:7871896-7872385(+) (11)	NA	Q4VYC8	Nodulation-signaling pathway 1 protein	AT3G13840.1	GRAS family transcription factor 	LOC_Os03g29480.1	"nodulation-signaling pathway 1 protein, putative, expressed"	Medtr8g025000.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202890.1.S1_at	A	A1TS	POPTR_0003s06350	POPTR_0003s06350 (11)	scaffold_3:7841373-7841872(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g024700.1	"proline-rich family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202891.1.S1_at	A	A1MS	POPTR_0003s06340	POPTR_0003s06340 (11)	scaffold_3:7833315-7833884(-) (11)	NA	NA	NA	AT1G72480.1	Lung seven transmembrane receptor family protein 	LOC_Os09g26830.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr2g007860.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.202892.1.S1_at	A	A1TS	POPTR_0003s06330	POPTR_0003s06330 (11)	scaffold_3:7818189-7818594(+) (11)	NA	Q1PFE1	AP2-like ethylene-responsive transcription factor AIL1	AT1G72570.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g07940.1	"AP2 domain containing protein, expressed"	Medtr8g024670.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.202893.1.S1_at	A	A1TS	POPTR_0003s06310	POPTR_0003s06310 (11)	scaffold_3:7793174-7794290(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202894.1.S1_at	A	A1TS	POPTR_0003s06290	POPTR_0003s06290 (11)	scaffold_3:7760299-7763689(+) (11)	NA	Q8VE65	Transcription initiation factor TFIID subunit 12	AT1G17440.2	Transcription initiation factor TFIID subunit A 	LOC_Os01g63940.1	"Transcription initiation factor TFIID subunit A containing protein, expressed"	Medtr8g024640.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0043565|sequence-specific DNA binding||GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
PtpAffx.202896.1.S1_at	A	A1TS	POPTR_0003s06260	POPTR_0003s06260 (11)	scaffold_3:7726153-7727435(+) (11)	NA	NA	NA	AT1G72640.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g29730.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202897.1.S1_at	A	A1TS	POPTR_0003s06210	POPTR_0003s06210 (11)	scaffold_3:7673199-7673446(+) (11)	NA	NA	NA	AT3G13980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). 	LOC_Os03g07920.1	expressed protein	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202898.1.S1_at	A	A1TS	POPTR_0003s06190	POPTR_0003s06190 (11)	scaffold_3:7636157-7636848(+) (11)	NA	Q8GYL9	Protein Brevis radix-like 2	AT3G14000.2	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2029.1.S1_s_at	A	A1TS	POPTR_0007s07300	POPTR_0007s07300 (11)	scaffold_7:5600604-5600700(-) (11)//scaffold_7:5637003-5637099(-) (11)	NA	O81974	Cytochrome P450 71D8	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr5g102030.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.20290.1.S1_s_at	A	A1TS	POPTR_0005s21720	POPTR_0005s21720 (11)	scaffold_5:20828799-20830479(+) (11)	NA	Q84WW6	Histone-lysine N-methyltransferase ASHH1	AT1G76710.2	SET domain group 26 	LOC_Os04g34976.2	"SET domain containing protein, expressed"	Medtr1g124410.1	Nuclear protein SET; SET-related region; AWS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202900.1.S1_at	A	A1TS	POPTR_0003s06110	POPTR_0003s06110 (11)	scaffold_3:7532921-7533437(-) (11)	NA	Q8GW57	"Pentatricopeptide repeat-containing protein At1g80150, mitochondrial"	AT1G80150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g39050.1	"pentatricopeptide, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202900.1.S1_x_at	A	A1TS	POPTR_0003s06110	POPTR_0003s06110 (11)	scaffold_3:7532921-7533437(-) (11)	NA	Q8GW57	"Pentatricopeptide repeat-containing protein At1g80150, mitochondrial"	AT1G80150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g39050.1	"pentatricopeptide, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202901.1.S1_at	A	A1MS	POPTR_0003s06070	POPTR_0003s06070 (11)	scaffold_3:7474395-7474720(+) (11)	NA	Q9XI29	Uncharacterized protein At1g15400	AT1G15400.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g46500.1	expressed protein	Medtr2g126000.1	"Uncharacterized protein At1g15400, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202902.1.S1_at	A	A1TS	POPTR_0003s06060	POPTR_0003s06060 (11)	scaffold_3:7449588-7450121(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g10900.1	"NB-ARC domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202903.1.S1_at	A	A1TS	POPTR_0003s06050	POPTR_0003s06050 (11)	scaffold_3:7443473-7444023(+) (11)	NA	Q9FZK1	F-box only protein 6	AT1G27340.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g69940.1	"OsFBX32 - F-box domain containing protein, expressed"	Medtr3g104000.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202904.1.S1_at	A	A1TS	POPTR_0003s06040	POPTR_0003s06040 (11)	scaffold_3:7416179-7417831(-) (11)	NA	NA	NA	AT5G11280.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g37480.1	expressed protein	Medtr3g136680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202905.1.S1_at	A	A1TS	POPTR_0003s06010	POPTR_0003s06010 (11)	scaffold_3:7381284-7382905(+) (11)	NA	Q9LT81	Zinc finger CCCH domain-containing protein 39	AT3G19360.1	Zinc finger (CCCH-type) family protein 	LOC_Os08g06330.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119730.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.202907.1.S1_at	A	A1TS	POPTR_0370s00200	POPTR_0370s00200 (11)	scaffold_370:3259-4578(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202908.1.S1_at	A	A1TS	POPTR_0003s05950	POPTR_0003s05950 (11)	scaffold_3:7313707-7314288(-) (11)	NA	NA	NA	AT1G68140.3	Protein of unknown function (DUF1644) 	LOC_Os01g42700.5	expressed protein	Medtr4g134230.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202909.1.S1_at	A	A1TS	POPTR_0003s05910	POPTR_0003s05910 (11)	scaffold_3:7278862-7279832(-) (11)	NA	NA	NA	AT3G22760.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202910.1.S1_at	A	A1TS	POPTR_0003s05880	POPTR_0003s05880 (10)	scaffold_3:7259689-7259865(+) (10)	NA	P10606	"Cytochrome c oxidase subunit 5B, mitochondrial"	AT1G80230.1	Rubredoxin-like superfamily protein 	LOC_Os06g05080.1	"cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed"	Medtr2g125770.1	"Cytochrome c oxidase, subunit Vb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005740|mitochondrial envelope
PtpAffx.202911.1.S1_at	A	A1TS	POPTR_0003s05870	POPTR_0003s05870 (11)	scaffold_3:7250192-7250833(+) (11)	NA	O48652	(6-4)DNA photolyase	AT3G15620.1	DNA photolyase family protein 	LOC_Os02g10990.1	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr1g108320.1	"DNA photolyase, FAD- binding N-terminal "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.202912.1.S1_at	A	A1TS	POPTR_0003s05850	POPTR_0003s05850 (11)	scaffold_3:7223969-7224343(-) (11)	NA	NA	NA	AT5G25460.1	"Protein of unknown function, DUF642 "	LOC_Os01g42520.1	expressed protein	Medtr2g125750.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202913.1.S1_at	A	A1TS	POPTR_0003s05840	POPTR_0003s05840 (9)	scaffold_3:7221538-7222363(+) (10)	NA	Q9XI23	Boron transporter 4	AT1G15460.1	HCO3- transporter family 	LOC_Os01g08020.1	"boron transporter protein, putative, expressed"	Medtr2g125700.1	"HCO3- transporter, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202914.1.S1_at	A	A1TS	POPTR_0003s05830	POPTR_0003s05830 (11)	scaffold_3:7211049-7211469(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202915.1.S1_at	A	A1TS	POPTR_0003s05800	POPTR_0003s05800 (11)	scaffold_3:7177271-7179591(+) (11)	NA	Q8TEQ8	GPI ethanolamine phosphate transferase 3	AT5G17250.1	Alkaline-phosphatase-like family protein 	LOC_Os10g08940.2	expressed protein	Medtr5g033600.1	Alkaline phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202916.1.S1_at	A	A1TS	POPTR_0003s05770	POPTR_0003s05770 (11)	scaffold_3:7146198-7146795(-) (11)	POPTR_0003s05775 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202918.1.S1_at	A	A1TS	POPTR_0003s05750	POPTR_0003s05750 (11)	scaffold_3:7120615-7121162(-) (11)	NA	Q9FMF5	Root phototropism protein 3	AT3G15570.1	Phototropic-responsive NPH3 family protein 	LOC_Os05g08530.1	"phototropic-responsive NPH3 family protein, putative, expressed"	Medtr2g123600.1	NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.202919.1.S1_at	A	A1TS	POPTR_0003s05740	POPTR_0003s05740 (11)	scaffold_3:7115862-7116351(-) (11)	NA	Q9M9E2	"Pentatricopeptide repeat-containing protein At1g15510, chloroplastic"	AT1G15510.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g49920.1	"pentatricopeptide, putative, expressed"	Medtr4g134960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20292.1.S1_at	A	A1TS	POPTR_0015s14610	POPTR_0015s14610 (9)	scaffold_15:14148334-14149400(+) (9)	NA	O24464	Adenylate kinase	AT4G25280.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g01530.1	"adenylate kinase, putative, expressed"	Medtr5g077590.1	UMP-CMP kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0019205|""nucleobase, nucleoside, nucleotide kinase activity""||GO:0005524|ATP binding"	NA
PtpAffx.202920.1.S1_at	A	A1TS	POPTR_0003s05730	POPTR_0003s05730 (11)	scaffold_3:7111339-7112500(+) (11)	NA	NA	NA	AT3G15550.1	unknown protein; Has 25732 Blast hits to 16979 proteins in 961 species: Archae - 144; Bacteria - 1801; Metazoa - 12681; Fungi - 1868; Plants - 912; Viruses - 94; Other Eukaryotes - 8232 (source: NCBI BLink). 	LOC_Os01g08150.1	expressed protein	Medtr2g123560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202922.1.S1_at	A	A1TS	POPTR_0003s05690	POPTR_0003s05690 (11)	scaffold_3:7089377-7091029(+) (11)	NA	Q9C968	Cyclin-A2-4	AT1G80370.1	Cyclin A2;4 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr2g123440.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.202923.1.S1_at	A	A1MS	POPTR_0003s05680	POPTR_0003s05680 (10)	scaffold_3:7080406-7080737(+) (10)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202926.1.S1_at	A	A1TS	POPTR_0003s05640	POPTR_0003s05640 (11)	scaffold_3:7054809-7057346(-) (11)	NA	NA	NA	AT4G14746.1	CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os11g37210.1	"MTN26L5 - MtN26 family protein precursor, expressed"	Medtr7g140750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202927.1.S1_at	A	A2TS	POPTR_0003s05630	POPTR_0003s05630 (11)//POPTR_0006s00350 (10)	scaffold_3:7045755-7046286(+) (11)//scaffold_6:139159-139609(-) (10)	NA	NA	NA	AT3G13300.1	Transducin/WD40 repeat-like superfamily protein 	NA	NA	Medtr3g080420.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202928.1.S1_at	A	A2TS	POPTR_0003s05620	POPTR_0003s05620 (11)//POPTR_0006s00350 (11)	scaffold_3:7040310-7040748(+) (11)//scaffold_6:139858-140296(-) (11)	NA	NA	NA	AT3G13300.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g033290.1	"Peptidase S26A, signal peptidase I; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202929.1.S1_at	A	A1TS	POPTR_0003s05600	POPTR_0003s05600 (11)	scaffold_3:6991805-6992523(+) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os09g16330.2	"pleiotropic drug resistance protein, putative, expressed"	Medtr7g117160.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.202930.1.S1_at	A	A1TS	POPTR_0003s05540	POPTR_0003s05540 (11)	scaffold_3:6873296-6873622(+) (11)	NA	Q6N069	"N-alpha-acetyltransferase 16, NatA auxiliary subunit"	AT1G80410.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g43030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g123340.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202931.1.S1_at	A	A1TS	POPTR_0003s05530	POPTR_0003s05530 (10)	scaffold_3:6841429-6841564(-) (11)	NA	NA	NA	AT1G15660.1	centromere protein C 	LOC_Os01g43050.1	"CENP-C1, putative, expressed"	Medtr6g083920.1	"CENP-C, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202932.1.S1_at	A	A1TS	POPTR_0003s05480	POPTR_0003s05480 (11)	scaffold_3:6760083-6760746(+) (11)	NA	Q55E69	Protein SYS1 homolog	AT1G79990.1	structural molecules 	LOC_Os01g41040.1	"SCF apoptosis response protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202933.1.S1_at	A	A1TS	POPTR_0003s05470	POPTR_0003s05470 (11)	scaffold_3:6744025-6744541(-) (11)	NA	NA	NA	AT3G24490.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os01g52090.2	"transcription factor like protein, putative, expressed"	AC234703_9.1	"Myb, DNA-binding AC234703.1 59278-57295 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202935.1.S1_s_at	A	A1TS	POPTR_0003s05460	POPTR_0003s05460 (11)	scaffold_3:6738818-6739258(+) (11)	NA	Q9FGK3	Putative MO25-like protein At5g47540	AT5G47540.1	Mo25 family protein 	LOC_Os07g39630.1	"calcium-binding protein, putative, expressed"	Medtr2g030130.1	Mo25-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202936.1.S1_x_at	A	A1TS	POPTR_0003s05450	POPTR_0003s05450 (11)	scaffold_3:6723635-6724062(+) (11)	NA	Q94738	97 kDa heat shock protein	AT1G79930.1	heat shock protein 91 	LOC_Os01g08560.2	"DnaK family protein, putative, expressed"	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202937.1.S1_at	A	A1TS	POPTR_0003s05440	POPTR_0003s05440 (11)	scaffold_3:6708989-6711453(-) (11)	NA	Q16X92	Regulator of telomere elongation helicase 1 homolog	AT1G79950.1	RAD3-like DNA-binding helicase protein 	LOC_Os01g40980.1	"helicase, putative, expressed"	AC234703_2.1	"Xeroderma pigmentosum group D protein; ATP-dependent helicase, DEAH-box; ; AC234703.1 26378-15197 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004003|ATP-dependent DNA helicase activity	NA
PtpAffx.202938.1.S1_at	A	A1MS	POPTR_0003s05420	POPTR_0003s05420 (10)	scaffold_3:6677334-6677452(-) (10)	POPTR_0018s07090 (7)	NA	NA	AT5G57015.1	casein kinase I-like 12 	NA	NA	Medtr2g120820.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202939.1.S1_at	A	A1TS	POPTR_0003s05410	POPTR_0003s05410 (11)	scaffold_3:6672139-6672434(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202941.1.S1_at	A	A1TS	POPTR_0003s05350	POPTR_0003s05350 (9)	scaffold_3:6626262-6626842(+) (9)	NA	NA	NA	AT1G52320.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT5G25590.1); Has 8725 Blast hits to 7476 proteins in 620 species: Archae - 10; Bacteria - 622; Metazoa - 3286; Fungi - 1319; Plants - 1442; Viruses - 221; Other Eukaryotes - 1825 (source: NCBI BLink). "	LOC_Os01g31580.1	"BZIP protein, putative, expressed"	Medtr2g123100.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202943.1.S1_at	A	A1TS	POPTR_0003s05310	POPTR_0003s05310 (11)	scaffold_3:6551769-6552543(+) (11)	POPTR_0109s00230 (8)	Q54I39	IST1-like protein	AT1G79910.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os02g06430.1	"DUF292 domain containing protein, expressed"	Medtr4g158790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202943.1.S1_s_at	A	A3TS	POPTR_0003s05310	POPTR_0003s05340 (11)//POPTR_0109s00230 (11)//POPTR_0003s05310 (11)	scaffold_109:16588-17530(-) (11)//scaffold_109:48690-49649(-) (11)//scaffold_3:6551648-6552608(+) (11)//scaffold_3:6602581-6603528(+) (11)	NA	Q54I39	IST1-like protein	AT1G79910.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os02g06430.1	"DUF292 domain containing protein, expressed"	Medtr4g158790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202944.1.S1_at	A	A1TS	POPTR_0003s05300	POPTR_0003s05300 (11)	scaffold_3:6537144-6537620(+) (11)	NA	Q9C9I2	Ethylene-responsive transcription factor ERF021	AT1G71450.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g36640.1	"dehydration-responsive element-binding protein, putative"	Medtr5g008580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.202945.1.S1_at	A	A1TS	POPTR_0003s05250	POPTR_0003s05250 (11)	scaffold_3:6486129-6486694(+) (11)	NA	NA	NA	AT1G15260.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g009160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202946.1.S1_at	A	A1TS	POPTR_0003s05210	POPTR_0003s05210 (11)	scaffold_3:6442410-6442819(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202947.1.S1_at	A	A1TS	POPTR_0003s05200	POPTR_0003s05200 (11)	scaffold_3:6420944-6421772(-) (11)	NA	Q9Y5W8	Sorting nexin-13	AT1G15240.2	"Phox-associated domain;Phox-like;Sorting nexin, C-terminal "	LOC_Os05g50660.1	"PX domain containing protein, putative, expressed"	Medtr4g009210.1	Phox-like; PX-associated; 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.202948.1.S1_at	A	A1MA	POPTR_0003s05200	POPTR_0003s05200 (11)	scaffold_3:6417627-6417953(+) (11)	NA	Q9Y5W8	Sorting nexin-13	AT1G15240.2	"Phox-associated domain;Phox-like;Sorting nexin, C-terminal "	LOC_Os05g50660.1	"PX domain containing protein, putative, expressed"	Medtr4g009210.1	Phox-like; PX-associated; 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.202949.1.S1_at	A	A1TS	POPTR_0003s05170	POPTR_0003s05170 (11)	scaffold_3:6377278-6378724(+) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os06g06780.1	"harpin-induced protein, putative, expressed"	Medtr2g122860.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.202949.1.S1_x_at	A	A1TS	POPTR_0003s05170	POPTR_0003s05170 (11)	scaffold_3:6377278-6378809(+) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os06g06780.1	"harpin-induced protein, putative, expressed"	Medtr2g122860.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.20295.1.A1_s_at	A	A2TS	POPTR_0014s13220	POPTR_0014s13220 (11)//POPTR_1388s00210 (11)	scaffold_1388:3373-3697(+) (11)//scaffold_14:9751438-9751762(+) (11)	NA	P93050	Probable LRR receptor-like serine/threonine-protein kinase RKF3	AT2G48010.1	receptor-like kinase in in flowers 3 	LOC_Os01g28730.1	"protein kinase domain containing protein, expressed"	Medtr2g006980.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202951.1.S1_at	A	A1TS	POPTR_0003s05120	POPTR_0003s05120 (11)	scaffold_3:6332793-6333517(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT1G79860.1	RHO guanyl-nucleotide exchange factor 12 	LOC_Os05g48640.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr2g122820.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.202952.1.S1_at	A	A1TS	POPTR_0003s05100	POPTR_0003s05100 (11)	scaffold_3:6321175-6321459(+) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.202953.1.S1_at	A	A1MS	POPTR_0003s05080	POPTR_0003s05080 (9)	scaffold_3:6277682-6277822(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202954.1.S1_at	A	A1TS	POPTR_0003s05050	POPTR_0003s05050 (11)	scaffold_3:6230758-6231174(-) (11)	NA	P45406	Cytochrome c-type biogenesis protein CcmH	AT1G15220.2	cytochrome c biogenesis protein family 	LOC_Os02g17520.1	"cytochrome c-type biogenesis protein ccmH precursor, putative, expressed"	Medtr5g011300.1	Cytochrome C biogenesis protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202955.1.S1_s_at	A	A1TS	POPTR_0003s05040	POPTR_0003s05040 (11)	scaffold_3:6219905-6221191(-) (11)	NA	NA	NA	AT3G16175.1	Thioesterase superfamily protein 	LOC_Os01g12920.1	"thioesterase family protein, putative, expressed"	Medtr5g078190.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202956.1.S1_at	A	A1TS	POPTR_0003s05040	POPTR_0003s05040 (11)	scaffold_3:6220938-6221129(-) (11)	NA	NA	NA	AT3G16175.1	Thioesterase superfamily protein 	LOC_Os01g12920.1	"thioesterase family protein, putative, expressed"	Medtr5g078190.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202957.1.S1_at	A	A1TS	POPTR_0003s05030	POPTR_0003s05030 (11)	scaffold_3:6211910-6212278(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202958.1.S1_at	A	A1TS	POPTR_0003s04990	POPTR_0003s04990 (11)	scaffold_3:6133537-6134007(+) (11)	NA	NA	NA	AT3G27750.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g39970.1	"vacuolar sorting protein 9 domain-containing protein, putative, expressed"	Medtr8g015160.1	"Tha8, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202959.1.S1_at	A	A1TS	POPTR_0003s04960	POPTR_0003s04960 (11)	scaffold_3:6063169-6063706(-) (11)	NA	NA	NA	AT4G34380.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g40260.1	"WD-40 repeat family protein, putative, expressed"	Medtr2g122480.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20296.1.A1_at	A	A1TS	POPTR_0005s19910	POPTR_0005s19910 (11)	scaffold_5:18909730-18910909(-) (11)	NA	Q93ZH0	LysM domain-containing GPI-anchored protein 1	AT1G21880.2	lysm domain GPI-anchored protein 1 precursor 	LOC_Os06g10660.1	"lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed"	Medtr3g097500.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidoglycan-binding LysM "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.202960.1.S1_at	A	A1TS	POPTR_0003s04950	POPTR_0003s04950 (11)	scaffold_3:6057935-6058437(-) (11)	NA	Q8YRI1	Uncharacterized WD repeat-containing protein alr3466	AT1G24530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g40260.1	"WD-40 repeat family protein, putative, expressed"	Medtr2g122480.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202961.1.S1_at	A	A1TS	POPTR_0003s04910	POPTR_0003s04910 (11)	scaffold_3:5951780-5954736(-) (11)	NA	P72991	ATP-dependent zinc metalloprotease FtsH 3	AT3G16290.1	AAA-type ATPase family protein 	LOC_Os06g45820.1	"OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed"	Medtr2g122350.1	Peptidase M41; AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.202962.1.S1_at	A	A1TS	POPTR_0003s04870	POPTR_0003s04870 (11)	scaffold_3:5909627-5909816(-) (11)	NA	NA	NA	AT5G25840.1	Protein of unknown function (DUF1677) 	LOC_Os01g10260.1	expressed protein	Medtr2g122270.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202962.1.S1_x_at	A	A1TS	POPTR_0003s04870	POPTR_0003s04870 (11)	scaffold_3:5909627-5909830(-) (11)	NA	NA	NA	AT5G25840.1	Protein of unknown function (DUF1677) 	LOC_Os01g10260.1	expressed protein	Medtr2g122270.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202963.1.S1_at	A	A1TS	POPTR_0003s04830	POPTR_0003s04830 (11)	scaffold_3:5853345-5853723(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202964.1.S1_at	A	A1TS	POPTR_0003s04800	POPTR_0003s04800 (11)	scaffold_3:5830353-5830983(-) (11)	NA	Q94A18	ABC transporter G family member 29	AT3G16340.1	pleiotropic drug resistance 1 	LOC_Os01g42410.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr8g015890.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.202965.1.S1_at	A	A1TS	POPTR_0003s04790	POPTR_0003s04790 (11)	scaffold_3:5829335-5830019(-) (11)	NA	Q5Z9S8	Pleiotropic drug resistance protein 12	AT3G16340.2	pleiotropic drug resistance 1 	LOC_Os06g36090.1	"ABC-2 type transporter, putative, expressed"	Medtr2g122200.1	AAA ATPase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202967.1.S1_at	A	A1TS	POPTR_0003s04730	POPTR_0003s04730 (11)	scaffold_3:5725993-5726681(-) (11)	NA	Q4U0S5	RNA polymerase II-associated factor 1 homolog	AT1G79730.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os08g06070.1	"ELF7, putative, expressed"	Medtr8g015960.1	"RNA polymerase II associated, Paf1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202968.1.S1_at	A	A1TS	POPTR_0003s04710	POPTR_0003s04710 (11)	scaffold_3:5703630-5705892(+) (11)	NA	NA	NA	AT5G48120.1	ARM repeat superfamily protein 	LOC_Os07g08050.1	expressed protein	Medtr2g122130.1	"binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202970.1.S1_at	A	A1TS	POPTR_0003s04660	POPTR_0003s04660 (11)	scaffold_3:5602707-5602959(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202971.1.S1_at	A	A1TS	POPTR_0003s04620	POPTR_0003s04620 (11)	scaffold_3:5525480-5525983(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G16490.1	IQ-domain 26 	LOC_Os01g09470.1	"IQ calmodulin-binding motif family protein, expressed"	Medtr8g016090.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202972.1.S1_at	A	A1TS	POPTR_0003s04620	POPTR_0003s04620 (11)	scaffold_3:5525211-5525272(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G16490.1	IQ-domain 26 	LOC_Os01g09470.1	"IQ calmodulin-binding motif family protein, expressed"	Medtr8g016090.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202972.1.S1_x_at	A	A1TS	POPTR_0003s04620	POPTR_0003s04620 (11)	scaffold_3:5524302-5525272(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G16490.1	IQ-domain 26 	LOC_Os01g09470.1	"IQ calmodulin-binding motif family protein, expressed"	Medtr8g016090.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202973.1.S1_at	A	A1TS	POPTR_0003s04600	POPTR_0003s04600 (11)	scaffold_3:5469422-5470682(+) (11)	NA	NA	NA	AT4G01590.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202975.1.S1_at	A	A1TS	POPTR_0032s00260	POPTR_0032s00260 (10)	scaffold_32:317408-317899(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202977.1.S1_at	A	A1TA	POPTR_0003s06690	POPTR_0003s06690 (9)	scaffold_3:8220388-8220927(-) (11)	NA	NA	NA	AT1G72390.1	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). 	LOC_Os10g25200.1	expressed protein	Medtr8g025570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202980.1.S1_at	A	A1MS	POPTR_0003s06740	POPTR_0003s06740 (10)	scaffold_3:8287645-8288737(+) (10)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT1G74960.3	fatty acid biosynthesis 1 	LOC_Os07g42420.1	"3-oxoacyl-synthase, putative, expressed"	Medtr8g132860.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202981.1.S1_at	A	A1TS	POPTR_0003s06760	POPTR_0003s06760 (11)	scaffold_3:8297824-8298712(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202982.1.S1_at	A	A1TS	POPTR_0003s06780	POPTR_0003s06780 (11)	scaffold_3:8308899-8309772(-) (11)	NA	NA	NA	AT3G14170.1	Plant protein of unknown function (DUF936) 	LOC_Os03g08390.2	expressed protein	Medtr5g035680.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202983.1.S1_at	A	A1TS	POPTR_0003s06790	POPTR_0003s06790 (11)	scaffold_3:8316970-8317333(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202984.1.S1_at	A	A1TS	POPTR_0003s06800	POPTR_0003s06800 (11)	scaffold_3:8319694-8321268(-) (11)	NA	NA	NA	AT1G72410.1	COP1-interacting protein-related 	LOC_Os07g42410.1	expressed protein	Medtr8g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202985.1.S1_s_at	A	A1TS	POPTR_0001s16540	POPTR_0001s16540 (10)	scaffold_1:13316793-13316859(+) (10)//scaffold_3:8326684-8326750(-) (10)	NA	NA	NA	AT1G17360.1	BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 9949 Blast hits to 7480 proteins in 576 species: Archae - 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants - 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI BLink). 	LOC_Os07g42410.1	expressed protein	Medtr8g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202986.1.S1_at	A	A1TS	POPTR_0003s06810	POPTR_0003s06810 (11)	scaffold_3:8330098-8331093(-) (11)	NA	NA	NA	AT3G14172.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g42410.1	expressed protein	Medtr8g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202988.1.S1_at	A	A1TS	POPTR_0003s06840	POPTR_0003s06840 (11)	scaffold_3:8388542-8388916(-) (11)	NA	NA	NA	AT5G11070.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202989.1.S1_s_at	A	A1TS	POPTR_0003s06850	POPTR_0003s06850 (10)	scaffold_3:8396032-8396442(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g025880.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202990.1.S1_at	A	A1TS	POPTR_0003s06900	POPTR_0003s06900 (11)	scaffold_3:8460999-8461820(-) (11)	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os08g45150.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.202991.1.S1_at	A	A1TS	POPTR_0003s06920	POPTR_0003s06920 (11)	scaffold_3:8479473-8479963(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202994.1.S1_at	A	A1TS	POPTR_0003s06980	POPTR_0003s06980 (11)	scaffold_3:8583265-8584044(-) (11)	NA	Q9LUM1	Protein LURP-one-related 11	AT3G14260.1	Protein of unknown function (DUF567) 	LOC_Os07g47540.1	"DUF567 domain containing protein, putative, expressed"	Medtr8g026530.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202995.1.S1_at	A	A1TS	POPTR_0003s06990	POPTR_0003s06990 (11)	scaffold_3:8603972-8604487(+) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT3G14270.1	phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os08g34950.1	"chaperonin Cpn60/TCP-1, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.202996.1.S1_at	A	A1TS	POPTR_0003s06990	POPTR_0003s06990 (11)	scaffold_3:8604722-8604819(+) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT3G14270.1	phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os08g34950.1	"chaperonin Cpn60/TCP-1, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.202996.1.S1_x_at	A	A1TS	POPTR_0003s06990	POPTR_0003s06990 (10)	scaffold_3:8604683-8604956(+) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT3G14270.1	phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os08g34950.1	"chaperonin Cpn60/TCP-1, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.202997.1.S1_at	A	A1TS	POPTR_0003s06990	POPTR_0003s06990 (11)	scaffold_3:8608332-8608983(+) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT3G14270.1	phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os08g34950.1	"chaperonin Cpn60/TCP-1, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.202997.1.S1_x_at	A	A1TS	POPTR_0003s06990	POPTR_0003s06990 (11)	scaffold_3:8608332-8609054(+) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT3G14270.1	phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os08g34950.1	"chaperonin Cpn60/TCP-1, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.202998.1.S1_at	A	A1TS	POPTR_0003s07060	POPTR_0003s07060 (11)	scaffold_3:8677778-8678597(+) (11)	NA	Q9C552	Pumilio homolog 23	AT1G72320.1	pumilio 23 	LOC_Os10g25110.1	"pumilio-family RNA binding repeat containing protein, expressed"	NA	NA	NA	GO:0003723|RNA binding	NA
PtpAffx.202999.1.S1_at	A	A1TS	POPTR_0003s07100	POPTR_0003s07100 (11)	scaffold_3:8706308-8706835(+) (11)	NA	NA	NA	AT1G53800.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g12354.1	"endonuclease, putative, expressed"	NA	NA	NA	GO:0004519|endonuclease activity	NA
PtpAffx.203.1.S1_a_at	A	A1TS	POPTR_0004s08480	POPTR_0004s08480 (9)	scaffold_4:7045044-7045076(-) (9)	POPTR_0017s02850 (8)	Q50EX6	Protein ODORANT1	AT5G16600.1	myb domain protein 43 	LOC_Os09g23620.1	"MYB family transcription factor, putative, expressed"	Medtr3g087570.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203.2.S1_at	A	A1MS	POPTR_0004s08480	POPTR_0004s08480 (11)	scaffold_4:7045926-7046563(-) (11)	NA	Q50EX6	Protein ODORANT1	AT5G16600.1	myb domain protein 43 	LOC_Os09g23620.1	"MYB family transcription factor, putative, expressed"	Medtr3g087570.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203.3.A1_at	A	A1TS	POPTR_0004s08480	POPTR_0004s08480 (11)	scaffold_4:7044731-7045046(-) (11)	NA	Q50EX6	Protein ODORANT1	AT5G16600.1	myb domain protein 43 	LOC_Os09g23620.1	"MYB family transcription factor, putative, expressed"	Medtr3g087570.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203000.1.S1_at	A	A1TS	POPTR_0003s07140	POPTR_0003s07140 (11)	scaffold_3:8738275-8739218(+) (11)	NA	NA	NA	AT3G14360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr5g017200.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.203001.1.S1_at	A	A1TS	POPTR_0003s07160	POPTR_0003s07160 (11)	scaffold_3:8750246-8750679(-) (11)	NA	Q9C7S5	Tyrosine-sulfated glycopeptide receptor 1	AT1G72300.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os02g05930.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203001.1.S1_s_at	A	A2TS	POPTR_0001s16110	POPTR_0003s07160 (11)//POPTR_0001s16110 (11)	scaffold_1:12934553-12935009(+) (11)//scaffold_3:8750152-8750608(-) (11)	NA	Q9C7S5	Tyrosine-sulfated glycopeptide receptor 1	AT1G72300.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os02g05930.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203004.1.S1_at	A	A1TS	POPTR_0003s07170	POPTR_0003s07170 (11)	scaffold_3:8766497-8766936(+) (11)	NA	Q39090	Protein UNUSUAL FLORAL ORGANS	AT1G30950.1	F-box family protein 	LOC_Os06g45460.1	OsFBX202 - F-box domain containing protein	AC235671_9.1	Cyclin-like F-box AC235671.2 40453-36545 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203006.1.S1_at	A	A1TS	POPTR_0003s07210	POPTR_0003s07210 (11)	scaffold_3:8796204-8796785(-) (11)	NA	Q9SN85	Pentatricopeptide repeat-containing protein At3g47530	AT3G47530.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os08g33700.1	"pentatricopeptide, putative, expressed"	Medtr5g044270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203008.1.S1_at	A	A1TS	POPTR_0003s07240	POPTR_0003s07240 (11)	scaffold_3:8827132-8827553(-) (11)	NA	B3EER1	50S ribosomal protein L7/L12	AT1G70190.2	"Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like "	LOC_Os05g48050.1	"ribosomal protein L7/L12 C-terminal domain containing protein, expressed"	Medtr8g092690.1	"Ribosomal protein L7/12, oligomerisation; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.203009.1.S1_at	A	A1TS	POPTR_0003s07260	POPTR_0003s07260 (11)	scaffold_3:8841043-8843063(+) (11)	NA	Q9Y5K3	Choline-phosphate cytidylyltransferase B	AT2G32260.1	phosphorylcholine cytidylyltransferase 	LOC_Os02g07720.2	"cytidylyltransferase domain containing protein, expressed"	Medtr4g089770.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.203010.1.S1_at	A	A1TS	POPTR_0003s07270	POPTR_0003s07270 (11)	scaffold_3:8845043-8845494(-) (11)	NA	Q9FLC6	RING-H2 finger protein ATL73	AT5G05280.1	RING/U-box superfamily protein 	LOC_Os06g45580.1	"RING-H2 finger protein, putative, expressed"	Medtr4g089780.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203011.1.S1_at	A	A1TS	POPTR_0003s07280	POPTR_0003s07280 (11)	scaffold_3:8850616-8851106(-) (11)	NA	O49432	Polygalacturonase QRT3	AT4G20040.1	Pectin lyase-like superfamily protein 	LOC_Os04g52320.1	"QRT3, putative, expressed"	AC235671_6.1	"Virulence factor, pectin lyase fold AC235671.2 24486-26653 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203012.1.S1_at	A	A1TS	POPTR_0003s07290	POPTR_0003s07290 (11)	scaffold_3:8856894-8857442(-) (11)	NA	O49432	Polygalacturonase QRT3	AT4G20040.1	Pectin lyase-like superfamily protein 	LOC_Os04g52320.1	"QRT3, putative, expressed"	AC235671_6.1	"Virulence factor, pectin lyase fold AC235671.2 24486-26653 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203013.1.S1_at	A	A1TS	POPTR_0003s07320	POPTR_0003s07320 (11)	scaffold_3:8906535-8909471(+) (11)	NA	Q9S7J8	Copper-transporting ATPase RAN1	AT5G44790.1	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) 	LOC_Os06g45500.1	"copper-transporting ATPase, putative, expressed"	Medtr4g089740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.203014.1.S1_at	A	A1TS	POPTR_0003s07340	POPTR_0003s07340 (11)	scaffold_3:8914839-8915266(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g089730.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203015.1.S1_at	A	A1TS	POPTR_0003s07360	POPTR_0003s07360 (11)	scaffold_3:8923538-8924376(-) (11)	NA	P11890	"Small heat shock protein, chloroplastic"	AT4G25200.1	mitochondrion-localized small heat shock protein 23.6 	LOC_Os02g52150.2	"heat shock 22 kDa protein, mitochondrial precursor, putative, expressed"	Medtr7g124360.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203016.1.S1_at	A	A1TS	POPTR_0003s07370	POPTR_0003s07370 (9)	scaffold_3:8924841-8927994(-) (11)	NA	Q9SHC8	Vesicle-associated protein 1-2	AT2G45140.1	plant VAP homolog 12 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr5g012520.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.203017.1.S1_at	A	A1TS	POPTR_0003s07380	POPTR_0003s07380 (11)	scaffold_3:8939662-8941528(-) (11)	NA	Q10137	Sec14 cytosolic factor	AT5G47510.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os07g27310.1	"CRAL/TRIO domain containing protein, expressed"	Medtr5g012540.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203018.1.S1_at	A	A1TS	POPTR_0003s07390	POPTR_0003s07390 (11)	scaffold_3:8952788-8953382(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT4G16563.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g45270.1	"aspartyl protease family protein, putative, expressed"	Medtr8g105840.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203019.1.S1_at	A	A1TS	POPTR_0003s07410	POPTR_0003s07410 (11)	scaffold_3:8972404-8974203(+) (11)	NA	Q944R7	Protein arginine N-methyltransferase 7	AT4G16570.1	protein arginine methyltransferase 7 	LOC_Os06g01640.1	"arginine N-methyltransferase 7, putative, expressed"	Medtr8g105830.1	"Probable protein arginine N-methyltransferase 7, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203020.1.S1_at	A	A1TS	POPTR_0003s07450	POPTR_0003s07450 (11)	scaffold_3:9004074-9004508(+) (11)	NA	O15488	Glycogenin-2	AT4G16600.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os04g46750.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g105780.1	"Glycosyl transferase, family 8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203021.1.S1_at	A	A1TS	POPTR_0003s07510	POPTR_0003s07510 (11)	scaffold_3:9065318-9065906(-) (11)	NA	P29136	Metalloendoproteinase 1	AT2G45040.1	Matrixin family protein 	LOC_Os10g40830.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g012770.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.203022.1.S1_at	A	A1TS	POPTR_0003s07530	POPTR_0003s07530 (11)	scaffold_3:9085757-9087177(-) (11)	NA	NA	NA	AT4G17330.1	G2484-1 protein 	LOC_Os10g41030.2	"agenet domain containing protein, putative, expressed"	Medtr5g012830.1	Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.203023.1.S1_x_at	A	A1TS	POPTR_0003s07540	POPTR_0003s07540 (11)	scaffold_3:9111497-9111709(-) (11)	NA	Q9M644	Ethylene-responsive transcription factor LEP	AT5G13910.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32790.1	"AP2 domain containing protein, expressed"	Medtr8g139310.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203024.1.S1_at	A	A1TS	POPTR_0003s07560	POPTR_0003s07560 (11)	scaffold_3:9127909-9128847(+) (11)	NA	NA	NA	AT4G17350.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os02g44040.1	expressed protein	Medtr5g012930.1	"Protein of unknown function DUF828, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203025.1.S1_at	A	A1TS	POPTR_0003s07600	POPTR_0003s07600 (11)	scaffold_3:9141605-9145227(-) (11)	NA	P39006	"Phosphatidylserine decarboxylase proenzyme 1, mitochondrial"	AT4G16700.1	phosphatidylserine decarboxylase 1 	LOC_Os03g01216.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr5g012940.1	Phosphatidylserine decarboxylase 	GO:0008654|phospholipid biosynthetic process	GO:0004609|phosphatidylserine decarboxylase activity	NA
PtpAffx.203027.1.S1_at	A	A1TS	POPTR_0003s07640	POPTR_0003s07640 (11)	scaffold_3:9169235-9170578(-) (11)	NA	P97868	E3 ubiquitin-protein ligase RBBP6	AT5G47430.1	"DWNN domain, a CCHC-type zinc finger "	LOC_Os10g29560.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g105530.1	"DNA-binding protein-like, putative "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.203028.1.S1_at	A	A1TS	POPTR_0003s07650	POPTR_0003s07650 (11)	scaffold_3:9176321-9176997(-) (11)	NA	NA	NA	AT5G47420.1	Tryptophan RNA-binding attenuator protein-like 	LOC_Os03g53600.1	"HTH DNA-binding protein, putative, expressed"	Medtr8g105520.1	Protein of unknown function DUF124 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203029.1.S1_at	A	A1TS	POPTR_0003s07660	POPTR_0003s07660 (11)	scaffold_3:9191980-9192524(+) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G16745.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	Medtr8g105490.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.203030.1.S1_at	A	A1TS	POPTR_0003s07680	POPTR_0003s07680 (11)	scaffold_3:9198308-9199051(-) (11)	NA	P10290	Anthocyanin regulatory C1 protein	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr8g105480.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203031.1.S1_at	A	A1TS	POPTR_0003s07700	POPTR_0003s07700 (11)	scaffold_3:9215736-9216049(+) (11)	NA	Q8LBQ7	Ethylene-responsive transcription factor ERF034	AT2G44940.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43940.1	"AP2 domain containing protein, expressed"	Medtr5g012990.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203032.1.S1_at	A	A1TS	POPTR_0003s07750	POPTR_0003s07750 (10)	scaffold_3:9258697-9259391(-) (11)	NA	Q84JU6	E3 ubiquitin-protein ligase HOS1	AT2G39810.1	ubiquitin-protein ligases 	LOC_Os03g52700.1	expressed protein	Medtr5g013030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203033.1.S1_at	A	A1TS	POPTR_0003s07770	POPTR_0003s07770 (11)	scaffold_3:9289432-9290050(-) (11)	NA	NA	NA	AT4G16790.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os04g46330.1	expressed protein	Medtr8g105280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203034.1.S1_at	A	A1TS	POPTR_0003s07840	POPTR_0003s07840 (11)	scaffold_3:9357939-9358795(-) (11)	NA	Q9LV11	"ATPase 11, plasma membrane-type"	AT5G62670.1	H(+)-ATPase 11 	LOC_Os03g01120.1	"E1-E2 ATPase domain containing protein, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.203035.1.S1_at	A	A1TS	POPTR_0003s07850	POPTR_0003s07850 (10)	scaffold_3:9374896-9375224(-) (10)	NA	Q40478	Ethylene-responsive transcription factor 5	AT5G47230.1	ethylene responsive element binding factor 5 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203036.1.S1_at	A	A1TS	POPTR_0003s07860	POPTR_0003s07860 (11)	scaffold_3:9382221-9382795(+) (11)	NA	NA	NA	AT4G16807.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g013270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203037.1.S1_at	A	A1TS	POPTR_0003s07880	POPTR_0003s07880 (11)	scaffold_3:9390931-9392156(-) (11)	NA	Q8YXQ7	Carbamoyl-phosphate synthase small chain	AT3G27740.1	carbamoyl phosphate synthetase A 	LOC_Os02g47850.2	"class I glutamine amidotransferase, putative, expressed"	Medtr8g109600.1	"Carbamoyl-phosphate synthase, small subunit; Glutamine amidotransferase, class I, active site "	GO:0006807|nitrogen compound metabolic process	GO:0004086|carbamoyl-phosphate synthase activity	NA
PtpAffx.203038.1.S1_at	A	A1TS	POPTR_0003s07900	POPTR_0003s07900 (11)	scaffold_3:9405333-9407914(+) (11)	NA	Q94JU3	COP9 signalosome complex subunit 7	AT1G02090.3	Proteasome component (PCI) domain protein 	LOC_Os07g30840.2	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203039.1.S1_at	A	A1TS	POPTR_0003s07920	POPTR_0003s07920 (11)	scaffold_3:9417778-9418036(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203040.1.S1_at	A	A1TS	POPTR_0003s07940	POPTR_0003s07940 (11)	scaffold_3:9440226-9440631(+) (11)	NA	O23522	"Phospholipase A1-Ibeta2, chloroplastic"	AT4G16820.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g43700.1	"triacylglycerol lipase like protein, putative, expressed"	Medtr5g013340.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.203041.1.S1_x_at	A	A1TS	POPTR_0003s07950	POPTR_0003s07950 (11)	scaffold_3:9446414-9446805(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203042.1.S1_at	A	A1MS	POPTR_0003s07980	POPTR_0003s07980 (11)	scaffold_3:9463041-9463154(+) (11)	NA	NA	NA	AT2G35658.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g013350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203042.1.S1_s_at	A	A1TS	POPTR_0003s07980	POPTR_0003s07980 (11)	scaffold_3:9462831-9462969(+) (11)	NA	NA	NA	AT2G35658.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g013350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203043.1.S1_at	A	A1TS	POPTR_0003s08010	POPTR_0003s08010 (11)	scaffold_3:9475917-9477706(+) (11)	NA	NA	NA	AT5G02890.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g43670.1	"transferase family protein, putative, expressed"	Medtr5g013380.1	transferase family protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203044.1.S1_at	A	A1TS	POPTR_0003s08020	POPTR_0003s08020 (11)	scaffold_3:9481111-9482760(+) (11)	NA	NA	NA	AT4G17540.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g41380.1	expressed protein	Medtr5g013400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203045.1.S1_at	A	A1TS	POPTR_0003s08040	POPTR_0003s08040 (11)	scaffold_3:9491365-9493314(-) (11)	NA	Q9WU81	Sugar phosphate exchanger 2	AT4G17550.1	Major facilitator superfamily protein 	LOC_Os04g46880.2	"transporter, major facilitator family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203046.1.S1_s_at	A	A1TS	POPTR_0003s08060	POPTR_0003s08060 (11)	scaffold_3:9512311-9513551(+) (11)	NA	P50582	Cell cycle serine/threonine-protein kinase hsk1	AT4G16970.1	Protein kinase superfamily protein 	LOC_Os10g41390.1	"protein kinase domain containing protein, expressed"	Medtr5g008910.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203047.1.S1_at	A	A2TS	POPTR_0007s10220	POPTR_0007s10220 (11)//POPTR_0318s00200 (11)	scaffold_318:8401-8973(+) (11)//scaffold_7:10035983-10036555(-) (11)	NA	NA	NA	AT5G67350.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr8g099220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203048.1.S1_at	A	A1TS	POPTR_0007s10210	POPTR_0007s10210 (11)	scaffold_7:10008254-10010324(-) (11)	NA	O81760	Probable protein phosphatase 2C 63	AT4G33920.1	Protein phosphatase 2C family protein 	LOC_Os12g39120.1	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203049.1.S1_at	A	A1TS	POPTR_0007s10180	POPTR_0007s10180 (10)	scaffold_7:9904585-9906339(-) (10)	NA	Q8NBP0	Tetratricopeptide repeat protein 13	AT4G37460.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g02300.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr5g016180.3	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203050.1.S1_at	A	A1TS	POPTR_0007s10170	POPTR_0007s10170 (11)	scaffold_7:9892976-9894655(-) (11)	NA	Q8NBP0	Tetratricopeptide repeat protein 13	AT4G37460.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g02300.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr5g016180.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203051.1.S1_at	A	A1TS	POPTR_0007s10160	POPTR_0007s10160 (11)	scaffold_7:9890761-9891525(+) (11)	NA	Q99614	Tetratricopeptide repeat protein 1	AT5G43120.1	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein 	LOC_Os05g34820.1	expressed protein	AC232874_13.1	Tetratricopeptide-like helical AC232874.1 44658-42406 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203052.1.S1_at	A	A1TS	POPTR_0007s10150	POPTR_0007s10150 (11)	scaffold_7:9867219-9870871(-) (11)	NA	A0AIS3	Chaperone protein dnaJ	AT4G37480.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g55360.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g016110.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.203053.1.S1_at	A	A1TS	POPTR_0007s10080	POPTR_0007s10080 (11)	scaffold_7:9816883-9817017(+) (11)	NA	NA	NA	AT4G37510.1	Ribonuclease III family protein 	LOC_Os01g59510.1	"chloroplast ribonuclease III domain protein, putative, expressed"	Medtr5g016060.1	Ribonuclease III 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003723|RNA binding	NA
PtpAffx.203053.1.S1_s_at	A	A1TS	POPTR_0007s10080	POPTR_0007s10080 (11)	scaffold_7:9815799-9816971(+) (11)	NA	NA	NA	AT4G37510.1	Ribonuclease III family protein 	LOC_Os01g59510.1	"chloroplast ribonuclease III domain protein, putative, expressed"	Medtr5g016060.1	Ribonuclease III 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003723|RNA binding	NA
PtpAffx.203054.1.S1_at	A	A1TS	POPTR_0007s10030	POPTR_0007s10030 (10)	scaffold_7:9715091-9715685(+) (10)	NA	Q9SN22	Scarecrow-like protein 32	AT3G49950.1	GRAS family transcription factor 	LOC_Os07g40020.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr8g099430.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203055.1.S1_at	A	A1TS	POPTR_0007s09960	POPTR_0007s09960 (11)	scaffold_7:9522835-9524389(+) (11)	NA	Q54II8	UPF0553 protein	NA	NA	LOC_Os07g39980.1	"GA22009-PA, putative, expressed"	Medtr5g015930.1	"UPF0553 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203056.1.S1_at	A	A1TS	POPTR_0007s09930	POPTR_0007s09930 (11)	scaffold_7:9489118-9489352(-) (11)	NA	NA	NA	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g55530.1	"HLS, putative, expressed"	Medtr5g015900.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.203057.1.S1_at	A	A1TS	POPTR_0007s09920	POPTR_0007s09920 (11)	scaffold_7:9479385-9481055(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203058.1.S1_at	A	A1TS	POPTR_0007s09900	POPTR_0007s09900 (11)	scaffold_7:9426349-9426933(-) (11)	NA	Q9UUA2	"DNA repair and recombination protein pif1, mitochondrial"	NA	NA	LOC_Os10g32030.1	"retrotransposon protein, putative, unclassified"	Medtr8g074770.1	"Protein of unknown function DUF889, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203059.1.S1_at	A	A1TS	POPTR_0007s09890	POPTR_0007s09890 (11)	scaffold_7:9422284-9422379(-) (11)	NA	Q06GZ1	"ATP synthase epsilon chain, chloroplastic"	ATCG00470.1	ATP synthase epsilon chain 	LOC_Os01g58000.1	"ATP synthase epsilon chain, putative, expressed"	Medtr7g021760.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, delta/epsilon subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)"""
PtpAffx.203059.1.S1_x_at	A	A1TS	POPTR_0007s09890	POPTR_0007s09890 (10)	scaffold_7:9422254-9422437(-) (11)	NA	Q06GZ1	"ATP synthase epsilon chain, chloroplastic"	ATCG00470.1	ATP synthase epsilon chain 	LOC_Os01g58000.1	"ATP synthase epsilon chain, putative, expressed"	Medtr7g021760.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, delta/epsilon subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)"""
PtpAffx.203061.1.S1_at	A	A1TS	POPTR_0007s09870	POPTR_0007s09870 (11)	scaffold_7:9397982-9398567(-) (11)	NA	Q9FJX6	Formin-like protein 6	AT5G67470.1	formin homolog 6 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr5g015760.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203062.1.S1_at	A	A1TS	POPTR_0007s09820	POPTR_0007s09820 (11)	scaffold_7:9334076-9334877(-) (11)	NA	Q2V3B2	Cyclin-D5-1	AT4G37630.2	cyclin d5;1 	LOC_Os03g10650.1	"cyclin, putative, expressed"	Medtr5g015730.1	"Cyclin, N-terminal; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203063.1.S1_at	A	A1TS	POPTR_0007s09810	POPTR_0007s09810 (11)	scaffold_7:9323878-9324421(-) (11)	NA	Q2TAW0	Condensin-2 complex subunit G2	AT1G64960.1	ARM repeat superfamily protein 	LOC_Os03g42040.1	"HEAT repeat family protein, putative, expressed"	Medtr5g015710.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203064.1.S1_at	A	A1TS	POPTR_0007s09790	POPTR_0007s09790 (11)	scaffold_7:9316502-9316954(+) (11)	NA	O81108	"Calcium-transporting ATPase 2, plasma membrane-type"	AT4G37640.1	calcium ATPase 2 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.203065.1.S1_at	A	A1TS	POPTR_0007s09760	POPTR_0007s09760 (11)	scaffold_7:9281011-9281868(+) (11)	NA	Q9CAL3	Cysteine-rich receptor-like protein kinase 2	AT1G70520.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 2 	LOC_Os05g03920.1	"TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g035020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203066.1.S1_x_at	A	A1TS	POPTR_0007s09740	POPTR_0007s09740 (11)	scaffold_7:9249649-9251295(-) (11)	NA	P55034	26S proteasome non-ATPase regulatory subunit 4	AT4G38630.1	regulatory particle non-ATPase 10 	LOC_Os03g13970.2	"26S proteasome non-ATPase regulatory subunit 4, putative, expressed"	Medtr5g022350.1	"von Willebrand factor, type A; Ubiquitin interacting motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203067.1.S1_at	A	A1MS	POPTR_0007s09740	POPTR_0007s09740 (11)	scaffold_7:9248887-9248990(-) (11)	NA	P55034	26S proteasome non-ATPase regulatory subunit 4	AT4G38630.1	regulatory particle non-ATPase 10 	LOC_Os03g13970.2	"26S proteasome non-ATPase regulatory subunit 4, putative, expressed"	Medtr5g022350.1	"von Willebrand factor, type A; Ubiquitin interacting motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203068.1.S1_at	A	A1TS	POPTR_0007s09730	POPTR_0007s09730 (11)	scaffold_7:9234255-9235793(-) (11)	NA	O09159	Lysosomal alpha-mannosidase	AT5G66150.1	Glycosyl hydrolase family 38 protein 	LOC_Os10g05069.1	"lysosomal alpha-mannosidase precursor, putative, expressed"	Medtr8g089510.1	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0044262|cellular carbohydrate metabolic process||GO:0006013|mannose metabolic process||GO:0044281|small molecule metabolic process	GO:0008270|zinc ion binding||GO:0004559|alpha-mannosidase activity	NA
PtpAffx.203070.1.S1_s_at	A	A1TS	POPTR_0007s09700	POPTR_0007s09700 (11)	scaffold_7:9194465-9195197(-) (11)	NA	NA	NA	AT3G51280.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g36740.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g089440.1	"male sterility MS5, putative  putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203071.1.S1_at	A	A1TS	POPTR_0007s09670	POPTR_0007s09670 (11)	scaffold_7:9174742-9175312(-) (11)	NA	NA	NA	AT3G51290.2	Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) 	LOC_Os09g36760.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g022440.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203072.1.S1_s_at	A	A1TS	POPTR_0007s09650	POPTR_0007s09650 (11)	scaffold_7:9155462-9155970(-) (11)	NA	O82485	Oligopeptide transporter 7	AT4G10770.1	oligopeptide transporter 7 	LOC_Os06g03540.1	"oligopeptide transporter, putative, expressed"	Medtr4g121720.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203073.1.S1_at	A	A1TS	POPTR_0007s09620	POPTR_0007s09620 (9)	scaffold_7:9102223-9102688(+) (11)	NA	O22755	RING-H2 finger protein ATL44	AT2G17450.1	RING-H2 finger A3A 	LOC_Os09g36500.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g094490.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203074.1.S1_at	A	A1TS	POPTR_0007s09600	POPTR_0007s09600 (11)	scaffold_7:9088351-9089149(+) (11)	NA	Q9UBZ4	DNA-(apurinic or apyrimidinic site) lyase 2	AT4G36050.2	endonuclease/exonuclease/phosphatase family protein 	LOC_Os09g36530.2	"endonuclease/exonuclease/phosphatase family protein, putative, expressed"	Medtr8g089910.1	"Exodeoxyribonuclease III xth; Zinc finger, GRF-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.203075.1.S1_at	A	A1TS	POPTR_0007s09590	POPTR_0007s09590 (10)	scaffold_7:9079978-9080590(-) (10)	NA	Q9LT23	Transcription factor bHLH121	AT3G19860.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g23823.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203076.1.S1_at	A	A1TS	POPTR_0007s09570	POPTR_0007s09570 (11)	scaffold_7:9031937-9032233(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203077.1.S1_at	A	A1TS	POPTR_0007s09530	POPTR_0007s09530 (11)	scaffold_7:8964569-8966432(+) (11)	NA	NA	NA	AT4G10890.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g19880.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203078.1.S1_at	A	A1TS	POPTR_0007s09520	POPTR_0007s09520 (11)	scaffold_7:8940820-8941384(+) (11)	NA	Q9LSL6	Dof zinc finger protein DOF5.7	AT5G65590.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	Medtr5g032870.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.203080.1.S1_at	A	A1TS	POPTR_0007s09470	POPTR_0007s09470 (11)	scaffold_7:8871901-8872612(+) (11)	NA	Q9SD02	Probable protein phosphatase 2C 47	AT3G51470.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr5g024330.1	Protein phosphatase 2C; C-type lectin; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203081.1.S1_at	A	A1TS	POPTR_0007s09460	POPTR_0007s09460 (11)	scaffold_7:8865247-8865747(-) (11)	NA	Q84W41	Glutamate receptor 3.6	AT3G51480.1	glutamate receptor 3.6 	LOC_Os02g02540.1	"glutamate receptor, putative, expressed"	Medtr5g024340.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203082.1.S1_at	A	A1TS	POPTR_0007s09440	POPTR_0007s09440 (11)	scaffold_7:8857391-8858569(+) (11)	NA	P32361	Serine/threonine-protein kinase/endoribonuclease IRE1	AT2G17520.1	Endoribonuclease/protein kinase IRE1-like 	LOC_Os07g28820.1	"ribonuclease 2-5A family protein, expressed"	Medtr5g024470.1	Protein kinase; PUG 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006397|mRNA processing	"GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0016891|""endoribonuclease activity, producing 5'-phosphomonoesters"""	NA
PtpAffx.203084.1.S1_at	A	A1TS	POPTR_0007s09380	POPTR_0007s09380 (11)	scaffold_7:8785297-8786107(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g13540.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203085.1.S1_at	A	A1TS	POPTR_0007s09370	POPTR_0007s09370 (11)	scaffold_7:8779752-8780316(-) (11)	NA	NA	NA	AT4G35680.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43750.1	"carrier, putative, expressed"	Medtr8g088780.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203086.1.S1_s_at	A	A1TS	POPTR_0007s09350	POPTR_0007s09350 (11)	scaffold_7:8734836-8735450(-) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47420.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g023200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203087.1.S1_at	A	A1TS	POPTR_0003s09170	POPTR_0003s09170 (11)	scaffold_3:10510882-10511491(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203088.1.S1_at	A	A1TS	POPTR_0003s09190	POPTR_0003s09190 (11)	scaffold_3:10524224-10524636(+) (11)	NA	Q7XLY8	E3 ubiquitin-protein ligase Os04g0590900	AT3G03550.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g029880.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203089.1.S1_at	A	A1TS	POPTR_0003s09210	POPTR_0003s09210 (11)	scaffold_3:10535589-10540045(-) (11)	NA	B3H6K1	Uncharacterized protein At4g17910	AT4G17910.1	"transferases, transferring acyl groups "	LOC_Os03g26090.1	"GPI-anchored wall transfer protein 1, putative, expressed"	Medtr8g078080.1	GWT1 	GO:0006506|GPI anchor biosynthetic process	"GO:0016746|""transferase activity, transferring acyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.203090.1.S1_at	A	A1TS	POPTR_0003s09220	POPTR_0003s09220 (11)	scaffold_3:10548643-10549170(+) (11)	NA	Q54BN3	Probable replication factor C subunit 3	AT5G27740.1	ATPase family associated with various cellular activities (AAA)  	LOC_Os10g42400.1	expressed protein	Medtr3g163740.1	"DNA polymerase III clamp loader subunit, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203091.1.S1_at	A	A1TS	POPTR_0003s09230	POPTR_0003s09230 (11)	scaffold_3:10550946-10551371(-) (11)	NA	O49691	RING-H2 finger protein ATL29	AT4G17920.1	RING/U-box superfamily protein 	LOC_Os02g52210.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g078070.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203092.1.S1_at	A	A1TS	POPTR_0003s09240	POPTR_0003s09240 (11)	scaffold_3:10555179-10556856(-) (11)	NA	Q9LQM3	Zinc finger CCCH domain-containing protein 12	AT1G32360.1	Zinc finger (CCCH-type) family protein 	LOC_Os08g06330.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g078060.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.203092.1.S1_x_at	A	A1TS	POPTR_0003s09240	POPTR_0003s09240 (11)	scaffold_3:10555179-10556856(-) (11)	NA	Q9LQM3	Zinc finger CCCH domain-containing protein 12	AT1G32360.1	Zinc finger (CCCH-type) family protein 	LOC_Os08g06330.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g078060.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.203093.1.S1_at	A	A1TS	POPTR_0003s09290	POPTR_0003s09290 (11)	scaffold_3:10595125-10595391(+) (11)	NA	Q84Y01	Inositol-tetrakisphosphate 1-kinase 1	AT5G16760.1	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os10g42550.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.203094.1.S1_at	A	A1TS	POPTR_0003s09320	POPTR_0003s09320 (11)	scaffold_3:10620791-10621269(-) (11)	NA	Q8LPK2	ABC transporter B family member 2	AT4G25960.1	P-glycoprotein 2 	LOC_Os02g46680.1	"multidrug resistance protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.203095.1.S1_at	A	A1TS	POPTR_0003s09340	POPTR_0003s09340 (10)	scaffold_3:10658345-10658909(-) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203096.1.S1_at	A	A1TS	POPTR_0003s09350	POPTR_0003s09350 (11)	scaffold_3:10662852-10664010(-) (11)	NA	Q38899	Origin recognition complex subunit 2	AT2G37560.1	origin recognition complex second largest subunit 2 	LOC_Os03g08640.1	"ORC2 - Putative origin recognition complex subunit 2, expressed"	Medtr1g024790.1	Immunoglobulin/major histocompatibility complex; Origin recognition complex subunit 2 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	NA	GO:0005634|nucleus||GO:0000808|origin recognition complex
PtpAffx.203097.1.S1_at	A	A1TS	POPTR_0003s09360	POPTR_0003s09360 (10)	scaffold_3:10669956-10670129(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203098.1.S1_at	A	A1TS	POPTR_0003s09380	POPTR_0003s09380 (11)	scaffold_3:10682735-10684314(-) (11)	NA	NA	NA	AT1G32310.1	unknown protein; Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g029560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203099.1.S1_at	A	A1TS	POPTR_0003s09470	POPTR_0003s09470 (11)	scaffold_3:10741552-10741822(+) (11)	NA	Q9FJS2	Homeobox-leucine zipper protein HDG5	AT5G46880.1	homeobox-7 	LOC_Os10g42490.2	"homeobox and START domains containing protein, putative, expressed"	Medtr5g029220.1	Lipid-binding START 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.203100.1.S1_at	A	A1MS	POPTR_0003s09490	POPTR_0003s09490 (10)	scaffold_3:10794583-10795030(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G32240.1	Homeodomain-like superfamily protein 	LOC_Os02g46940.1	"MYB family transcription factor, putative, expressed"	Medtr5g029360.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203101.1.S1_at	A	A1TS	POPTR_0003s09500	POPTR_0003s09500 (11)	scaffold_3:10798825-10798977(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203102.1.S1_at	A	A1TS	POPTR_0003s09510	POPTR_0003s09510 (11)	scaffold_3:10803136-10803251(+) (11)	NA	Q8R3J5	Cation transport regulator-like protein 1	AT1G44790.1	ChaC-like family protein 	LOC_Os04g37580.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr1g037330.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203102.1.S1_x_at	A	A1TS	POPTR_0003s09510	POPTR_0003s09510 (11)	scaffold_19:15649461-15650328(+) (9)//scaffold_3:10802447-10803314(+) (11)	NA	Q8R3J5	Cation transport regulator-like protein 1	AT1G44790.1	ChaC-like family protein 	LOC_Os04g37580.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr1g037330.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203103.1.S1_at	A	A1TS	POPTR_0003s09550	POPTR_0003s09550 (10)	scaffold_3:10870119-10870208(+) (10)	NA	Q7ZVZ7	Abhydrolase domain-containing protein FAM108C1	AT1G32190.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g06420.1	"abhydrolase domain-containing protein FAM108C1, putative, expressed"	Medtr5g029090.1	"Abhydrolase domain-containing protein FAM108C1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203103.1.S1_s_at	A	A1TS	POPTR_0003s09550	POPTR_0003s09550 (11)	scaffold_3:10867201-10870127(+) (11)	NA	Q7ZVZ7	Abhydrolase domain-containing protein FAM108C1	AT1G32190.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g06420.1	"abhydrolase domain-containing protein FAM108C1, putative, expressed"	Medtr5g029090.1	"Abhydrolase domain-containing protein FAM108C1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203104.1.S1_at	A	A1TS	POPTR_0003s09580	POPTR_0003s09580 (11)	scaffold_3:10879314-10879809(+) (11)	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity||GO:0008270|zinc ion binding	GO:0016020|membrane
PtpAffx.203105.1.S1_at	A	A1TS	POPTR_0003s09650	POPTR_0003s09650 (11)	scaffold_3:10926289-10926757(+) (11)	NA	NA	NA	AT2G35540.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os06g02170.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr5g028980.1	"Aminoacyl-tRNA synthetase, class I "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.203106.1.S1_at	A	A1TS	POPTR_0003s09690	POPTR_0003s09690 (9)	scaffold_3:10958609-10960328(+) (11)	POPTR_0001s01770 (7)	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr5g028110.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.203107.1.S1_at	A	A1TS	POPTR_0003s09750	POPTR_0003s09750 (11)	scaffold_3:10989730-10991293(+) (11)	NA	NA	NA	AT5G45610.1	protein dimerizations 	NA	NA	Medtr5g028070.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203108.1.S1_s_at	A	A2TS	POPTR_0003s09770	POPTR_0003s09780 (11)//POPTR_0003s09770 (11)	scaffold_3:11012274-11012618(+) (11)//scaffold_3:11021886-11022230(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028050.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.203109.1.S1_at	A	A1TS	POPTR_0003s09780	POPTR_0003s09780 (11)	scaffold_3:11022019-11022393(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028010.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.203110.1.S1_at	A	A1TS	POPTR_0003s09800	POPTR_0003s09800 (11)	scaffold_3:11032861-11033371(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g06380.1	"NBS-LRR type disease resistance protein, putative, expressed"	Medtr5g028060.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203111.1.S1_at	A	A1MS	POPTR_0003s09840	POPTR_0003s09840 (11)	scaffold_3:11046250-11046794(-) (11)	NA	NA	NA	AT2G35550.4	basic pentacysteine 7 	LOC_Os06g04010.2	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203112.1.S1_at	A	A1TS	POPTR_0003s09880	POPTR_0003s09880 (11)	scaffold_3:11056845-11058736(-) (11)	NA	Q84P24	4-coumarate--CoA ligase-like 6	AT4G19010.1	AMP-dependent synthetase and ligase family protein 	LOC_Os08g04770.1	"AMP-binding domain containing protein, expressed"	Medtr5g027650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.203113.1.S1_at	A	A1TS	POPTR_0003s09920	POPTR_0003s09920 (11)	scaffold_3:11079428-11079981(+) (11)	NA	Q94F87	DNA (cytosine-5)-methyltransferase CMT2	AT4G19020.1	chromomethylase 2 	LOC_Os05g13780.1	"C-5 cytosine-specific DNA methylase, putative, expressed"	AC233109_26.1	Chromo; Bromo adjacent region; C-5 cytosine-specific DNA methylase AC233109.4 111187-105639 E EGN_Mt090430 200	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.203115.1.S1_at	A	A1TS	POPTR_0003s09940	POPTR_0003s09940 (11)	scaffold_3:11097933-11099230(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT5G45580.1	Homeodomain-like superfamily protein 	LOC_Os02g47190.1	"MYB family transcription factor, putative, expressed"	Medtr5g027610.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203116.1.S1_at	A	A1TS	POPTR_0003s09960	POPTR_0003s09960 (11)	scaffold_3:11108572-11109081(+) (11)	NA	NA	NA	AT5G48790.1	Domain of unknown function (DUF1995) 	LOC_Os02g03670.1	expressed protein	Medtr5g027430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203117.1.S1_at	A	A1TS	POPTR_0003s09980	POPTR_0003s09980 (11)	scaffold_3:11118937-11120888(-) (11)	NA	NA	NA	AT4G19040.1	ENHANCED DISEASE RESISTANCE 2 	LOC_Os10g31770.1	"START domain containing protein, expressed"	Medtr5g027400.2	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203118.1.S1_at	A	A1TS	POPTR_0003s10010	POPTR_0003s10010 (11)	scaffold_3:11148696-11149192(-) (11)	NA	Q5ZIN1	Nuclear migration protein nudC	AT4G27890.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203119.1.S1_at	A	A1TS	POPTR_0003s10020	POPTR_0003s10020 (11)	scaffold_3:11152196-11152748(-) (11)	NA	P0CB16	Putative disease resistance protein At4g19050	AT4G19050.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g58530.1	"NB-ARC/LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.203120.1.S1_at	A	A1TS	POPTR_0003s10050	POPTR_0003s10050 (11)	scaffold_3:11176449-11176786(+) (11)	NA	NA	NA	AT5G14890.1	NHL domain-containing protein 	LOC_Os02g50940.1	"NHL repeat-containing protein, putative, expressed"	AC233671_7.1	"NHL repeat-containing protein, related AC233671.1 28492-28962 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203121.1.S1_at	A	A1MS	POPTR_0003s10070	POPTR_0003s10070 (10)	scaffold_3:11197933-11199279(+) (10)	POPTR_0003s10080 (7)	Q17TI5	Protein BREVIS RADIX	AT1G31880.1	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203124.1.S1_at	A	A1TS	POPTR_0003s10210	POPTR_0003s10210 (11)	scaffold_3:11291346-11292644(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g02520.1	"interacting protein of DMI3, putative, expressed"	Medtr5g027010.1	"interacting protein of DMI3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203125.1.S1_s_at	A	A1TS	POPTR_0003s10250	POPTR_0003s10250 (11)	scaffold_3:11311537-11311719(-) (11)	NA	O49255	NAC domain-containing protein 29	AT1G69490.1	"NAC-like, activated by AP3/PI "	LOC_Os03g60080.1	"NAC domain-containing protein 67, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.203126.1.S1_at	A	A1TS	POPTR_0003s10260	POPTR_0003s10260 (11)	scaffold_3:11312937-11313363(-) (11)	NA	Q9R0S5	Y+L amino acid transporter 1	AT1G31830.1	Amino acid permease family protein 	LOC_Os03g37984.2	"amino acid permease family protein, putative, expressed"	Medtr5g026930.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203127.1.S1_at	A	A1TS	POPTR_0003s10280	POPTR_0003s10280 (11)	scaffold_3:11324047-11324650(+) (11)	NA	Q9C6S1	Formin-like protein 14	AT1G31810.1	Formin Homology 14 	LOC_Os10g02980.1	"formin, putative, expressed"	Medtr5g026820.1	"C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203128.1.S1_at	A	A1TA	POPTR_0003s10280	POPTR_0003s10280 (11)	scaffold_3:11325199-11326547(-) (11)	NA	Q9C6S1	Formin-like protein 14	AT1G31810.1	Formin Homology 14 	LOC_Os10g02980.1	"formin, putative, expressed"	Medtr5g026820.1	"C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203129.1.S1_at	A	A1TS	POPTR_0003s10280	POPTR_0003s10280 (11)	scaffold_3:11330225-11331100(+) (11)	NA	Q9C6S1	Formin-like protein 14	AT1G31810.1	Formin Homology 14 	LOC_Os10g02980.1	"formin, putative, expressed"	Medtr5g026820.1	"C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203130.1.S1_at	A	A1TS	POPTR_0003s10300	POPTR_0003s10300 (11)	scaffold_3:11340349-11341006(+) (11)	NA	O94469	Probable urea active transporter 1	AT5G45380.1	solute:sodium symporters;urea transmembrane transporters 	LOC_Os10g42960.1	"urea active transporter, putative, expressed"	Medtr5g026800.1	Na+/solute symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203131.1.S1_at	A	A1TS	POPTR_0003s10330	POPTR_0003s10330 (11)	scaffold_3:11347709-11348207(-) (11)	NA	Q9C801	Protein MOS2	AT1G33520.1	D111/G-patch domain-containing protein 	LOC_Os03g14860.1	"G-patch domain containing protein, expressed"	Medtr1g046100.1	D111/G-patch; KOW 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.203131.1.S1_x_at	A	A1TS	POPTR_0003s10330	POPTR_0003s10330 (11)	scaffold_3:11347609-11348207(-) (11)	NA	Q9C801	Protein MOS2	AT1G33520.1	D111/G-patch domain-containing protein 	LOC_Os03g14860.1	"G-patch domain containing protein, expressed"	Medtr1g046100.1	D111/G-patch; KOW 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.203132.1.S1_at	A	A1TS	POPTR_0003s10340	POPTR_0003s10340 (10)	scaffold_3:11353059-11354563(-) (10)	NA	Q9FT73	ATP-dependent DNA helicase Q-like 2	AT1G31360.1	RECQ helicase L2 	LOC_Os11g48090.5	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g026720.1	ATP-requiring DNA helicase RecQ; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003676|nucleic acid binding||GO:0043140|ATP-dependent 3'-5' DNA helicase activity||GO:0005524|ATP binding	GO:0005622|intracellular
PtpAffx.203133.1.S1_at	A	A1TS	POPTR_0003s10360	POPTR_0003s10360 (11)	scaffold_3:11371136-11371959(-) (11)	NA	O80450	Trihelix transcription factor GT-3b	AT2G38250.1	Homeodomain-like superfamily protein 	LOC_Os04g51320.1	"transcription factor TF2, putative, expressed"	Medtr5g026680.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203134.1.S1_at	A	A1TS	POPTR_0003s10370	POPTR_0003s10370 (11)	scaffold_3:11379728-11380310(+) (11)	NA	Q42602	Cytochrome P450 89A2	AT1G64940.1	"cytochrome P450, family 87, subfamily A, polypeptide 6 "	LOC_Os06g22340.1	"cytochrome P450, putative, expressed"	Medtr5g026660.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.203135.1.S1_at	A	A1TS	POPTR_0003s10400	POPTR_0003s10400 (11)	scaffold_3:11398369-11399169(+) (11)	NA	P41091	Eukaryotic translation initiation factor 2 subunit 3	AT1G04170.1	eukaryotic translation initiation factor 2 gamma subunit 	LOC_Os12g41400.1	"eukaryotic translation initiation factor 2 subunit gamma, putative, expressed"	Medtr2g091680.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.203136.1.S1_at	A	A1TS	POPTR_0003s10440	POPTR_0003s10440 (11)	scaffold_3:11422308-11422784(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT2G35615.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g34920.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr5g088120.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203137.1.S1_at	A	A1TS	POPTR_0003s10450	POPTR_0003s10450 (11)	scaffold_3:11427405-11428115(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT1G61590.1	Protein kinase superfamily protein 	LOC_Os03g24930.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g026500.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203138.1.S1_at	A	A1TS	POPTR_0003s10460	POPTR_0003s10460 (11)	scaffold_3:11432492-11433033(+) (11)	NA	NA	NA	AT4G19460.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g46430.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr8g086410.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.203139.1.S1_at	A	A1TS	POPTR_0003s10470	POPTR_0003s10470 (11)	scaffold_3:11433544-11434211(-) (11)	NA	NA	NA	AT5G45275.1	Major facilitator superfamily protein 	LOC_Os11g01590.1	"nodulin, putative, expressed"	Medtr5g026470.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203141.1.S1_at	A	A1TS	POPTR_0003s10520	POPTR_0003s10520 (11)	scaffold_3:11455071-11455897(-) (11)	NA	A8MS41	Carbon catabolite repressor protein 4 homolog 4	AT1G31500.1	DNAse I-like superfamily protein 	LOC_Os05g32330.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr5g026430.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203142.1.S1_at	A	A1TS	POPTR_0003s10530	POPTR_0003s10530 (11)	scaffold_3:11464451-11467564(+) (11)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g141000.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.203143.1.S1_at	A	A1TS	POPTR_0003s10540	POPTR_0003s10540 (9)	scaffold_3:11484348-11484951(+) (9)	NA	Q12996	Cleavage stimulation factor subunit 3	AT1G17760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g38380.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr6g017970.1	Suppressor of forked; 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	GO:0005634|nucleus
PtpAffx.203144.1.S1_at	A	A1TS	POPTR_0003s10550	POPTR_0003s10550 (11)	scaffold_3:11490833-11491329(-) (11)	NA	Q07G10	Alkylated DNA repair protein alkB homolog 8	AT1G31600.3	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g51360.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative"	Medtr5g026160.1	RNA-binding region RNP-1 (RNA recognition motif); 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.203145.1.S1_at	A	A1TS	POPTR_0003s10570	POPTR_0003s10570 (11)	scaffold_3:11507588-11509540(-) (11)	NA	Q9FH80	Beta-amylase 8	AT5G45300.1	beta-amylase 2 	LOC_Os02g03690.1	"beta-amylase, putative, expressed"	Medtr5g026370.1	"Glycoside hydrolase, family 14; BZR1, transcriptional repressor "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.203146.1.S1_at	A	A1TS	POPTR_0003s10580	POPTR_0003s10580 (10)	scaffold_3:11514904-11514960(-) (10)	NA	Q06003	Protein goliath	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os05g32350.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g026380.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203146.1.S1_s_at	A	A1TS	POPTR_0003s10580	POPTR_0003s10580 (11)	scaffold_3:11514962-11516306(-) (11)	NA	Q06003	Protein goliath	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os05g32350.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g026380.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203147.1.S1_at	A	A1TS	POPTR_0003s10600	POPTR_0003s10600 (11)	scaffold_3:11538888-11539561(+) (11)	NA	Q9FGN8	Protein DYAD	AT5G51330.1	SWITCH1 	LOC_Os03g44760.1	"SWI1, putative, expressed"	AC235756_28.1	"SWI1, related AC235756.1 180586-176312 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203148.1.S1_at	A	A1TS	POPTR_0003s10610	POPTR_0003s10610 (11)	scaffold_3:11543711-11544416(+) (11)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT4G23340.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g03034.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr7g087320.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.203149.1.S1_at	A	A1TS	POPTR_0003s10640	POPTR_0003s10640 (11)	scaffold_3:11555963-11556415(+) (11)	NA	Q5KII2	Branchpoint-bridging protein	AT5G51300.3	splicing factor-related 	LOC_Os04g31620.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.203150.1.S1_at	A	A1TS	POPTR_0003s10650	POPTR_0003s10650 (11)	scaffold_3:11563601-11565680(+) (11)	NA	NA	NA	AT4G25180.1	RNA polymerase III RPC4 	LOC_Os04g32350.1	"RNA polymerase III RPC4 domain containing protein, expressed"	Medtr1g093720.1	RNA polymerase III RPC4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006383|transcription from RNA polymerase III promoter	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005666|DNA-directed RNA polymerase III complex
PtpAffx.203151.1.S1_at	A	A1TS	POPTR_0003s10660	POPTR_0003s10660 (11)	scaffold_3:11567250-11568461(-) (11)	NA	NA	NA	AT4G25170.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os02g44010.2	expressed protein	Medtr7g040860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203152.1.S1_at	A	A1MS	POPTR_0003s10670	POPTR_0003s10670 (9)	scaffold_3:11578430-11578788(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203153.1.S1_at	A	A1TS	POPTR_0003s10730	POPTR_0003s10730 (11)	scaffold_3:11635792-11637021(+) (11)	NA	Q8VYT5	F-box protein At5g07670	AT5G07670.1	RNI-like superfamily protein 	LOC_Os02g44104.1	"F-box family protein, putative, expressed"	Medtr2g026110.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203155.1.S1_at	A	A1TS	POPTR_0003s10780	POPTR_0003s10780 (11)	scaffold_3:11664799-11665343(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203156.1.S1_at	A	A1TS	POPTR_0003s10800	POPTR_0003s10800 (11)	scaffold_3:11684872-11685520(-) (11)	NA	Q9STX9	Probable aquaporin TIP5-1	AT3G47440.1	tonoplast intrinsic protein 5;1 	LOC_Os04g46490.1	"aquaporin protein, putative, expressed"	Medtr2g071110.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.203157.1.S1_at	A	A1TS	POPTR_0003s10810	POPTR_0003s10810 (11)	scaffold_3:11687064-11688023(-) (11)	NA	Q86A88	"Dynein light chain, cytoplasmic"	AT5G20110.1	Dynein light chain type 1 family protein 	LOC_Os02g36990.1	"dynein light chain type 1 family protein, putative, expressed"	Medtr8g119810.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.203158.1.S1_at	A	A1TS	POPTR_0003s10810	POPTR_0003s10810 (10)	scaffold_3:11688505-11689752(-) (11)	NA	Q86A88	"Dynein light chain, cytoplasmic"	AT5G20110.1	Dynein light chain type 1 family protein 	LOC_Os02g36990.1	"dynein light chain type 1 family protein, putative, expressed"	Medtr8g119810.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.203159.1.S1_s_at	A	A1TS	POPTR_0003s10890	POPTR_0003s10890 (11)	scaffold_3:11743689-11744107(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20316.2.S1_a_at	A	A1TS	POPTR_0004s20810	POPTR_0004s20810 (11)	scaffold_4:20199699-20202269(-) (11)	NA	Q9BRU9	rRNA-processing protein UTP23 homolog	AT2G34570.1	PIN domain-like family protein 	LOC_Os02g26850.1	"rRNA-processing protein FCF, putative, expressed"	Medtr2g117140.1	Protein of unknown function DUF652 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203160.1.S1_at	A	A1TS	POPTR_0003s10920	POPTR_0003s10920 (11)	scaffold_3:11779199-11779745(+) (11)	NA	O64769	Potassium transporter 11	AT2G35060.1	K+ uptake permease 11 	LOC_Os04g52390.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.203161.1.S1_at	A	A1TS	POPTR_0003s10960	POPTR_0003s10960 (11)	scaffold_3:11816561-11817502(-) (11)	NA	NA	NA	AT4G19980.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203162.1.S1_at	A	A1TS	POPTR_0003s10980	POPTR_0003s10980 (11)	scaffold_3:11837194-11837889(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203163.1.S1_at	A	A1TS	POPTR_0003s10990	POPTR_0003s10990 (11)	scaffold_3:11838746-11839327(-) (11)	NA	NA	NA	AT2G35730.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g70240.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203164.1.S1_at	A	A1TS	POPTR_0003s11010	POPTR_0003s11010 (11)	scaffold_3:11851044-11851633(+) (11)	NA	NA	NA	AT5G47580.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr8g105910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203166.1.S1_at	A	A1TS	POPTR_0003s11020	POPTR_0003s11020 (11)	scaffold_3:11862929-11863404(-) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44370.1	"scarecrow, putative, expressed"	Medtr4g029280.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203167.1.S1_at	A	A1TS	POPTR_0003s11040	POPTR_0003s11040 (11)	scaffold_3:11889896-11892900(-) (11)	NA	NA	NA	AT4G16510.1	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g44330.1	"rho guanine nucleotide exchange factor, putative, expressed"	Medtr8g105950.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203169.1.S1_at	A	A1TS	POPTR_0003s11110	POPTR_0003s11110 (11)	scaffold_3:11980896-11980971(+) (11)	NA	NA	NA	AT4G22560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 380 Blast hits to 380 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g44280.1	"zinc finger protein, putative"	Medtr5g012350.1	"AT1G62520, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203169.1.S1_x_at	A	A1TS	POPTR_0003s11110	POPTR_0003s11110 (11)	scaffold_3:11980866-11980971(+) (11)	NA	NA	NA	AT4G22560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 380 Blast hits to 380 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g44280.1	"zinc finger protein, putative"	Medtr5g012350.1	"AT1G62520, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20317.2.S1_at	A	A1MS	POPTR_0004s15530	POPTR_0004s15530 (11)	scaffold_4:16139609-16139990(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g093240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203170.1.S1_at	A	A1TS	POPTR_0003s11120	POPTR_0003s11120 (11)	scaffold_3:11989039-11989750(-) (11)	NA	O04336	Probable WRKY transcription factor 21	AT2G30590.1	WRKY DNA-binding protein 21 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.203171.1.S1_at	A	A1TS	POPTR_0003s11140	POPTR_0003s11140 (11)	scaffold_3:12003735-12005165(+) (11)	NA	Q94BV5	Flavin-containing monooxygenase FMO GS-OX-like 4	AT1G62600.1	Flavin-binding monooxygenase family protein 	LOC_Os10g40570.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr5g012290.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203172.1.S1_at	A	A1TS	POPTR_0003s11150	POPTR_0003s11150 (9)	scaffold_3:12008155-12008507(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203173.1.S1_at	A	A1TS	POPTR_0003s11160	POPTR_0003s11160 (11)	scaffold_3:12009380-12010560(+) (11)	NA	P49244	"3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic"	AT1G62640.2	3-ketoacyl-acyl carrier protein synthase III 	LOC_Os04g55060.1	"3-oxoacyl-synthase III, chloroplast precursor, putative, expressed"	Medtr5g009740.1	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.203174.1.S1_at	A	A1TS	POPTR_0003s11180	POPTR_0003s11180 (11)	scaffold_3:12027955-12028792(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203175.1.S1_at	A	A1TS	POPTR_0003s11190	POPTR_0003s11190 (11)	scaffold_3:12042860-12044100(+) (11)	POPTR_0873s00200 (6)	O50401	Trehalose-phosphate phosphatase	AT4G12430.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g40550.2	"CPuORF23 - conserved peptide uORF-containing transcript, expressed"	Medtr8g106220.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.203176.1.S1_at	A	A1TS	POPTR_0003s11250	POPTR_0003s11250 (11)	scaffold_3:12113726-12114999(-) (11)	NA	Q9FWX2	NAC domain-containing protein 7	AT1G12260.1	NAC 007 	LOC_Os02g42970.1	"NAC domain containing protein, putative"	Medtr8g106290.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.203180.1.S1_s_at	A	A1TS	POPTR_0003s11300	POPTR_0003s11300 (11)	scaffold_3:12152426-12152922(-) (11)	NA	P34811	"Elongation factor G, chloroplastic"	AT1G62750.1	Translation elongation factor EFG/EF2 protein 	LOC_Os04g45490.1	"elongation factor, putative, expressed"	Medtr8g106340.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.203181.1.S1_s_at	A	A2TS	POPTR_0003s11390	POPTR_0003s11390 (11)//POPTR_0331s00210 (10)	scaffold_3:12217060-12217584(+) (11)//scaffold_331:14914-15438(+) (10)	NA	Q9SBQ9	Flavonoid 3'-monooxygenase	AT4G12320.1	"cytochrome P450, family 706, subfamily A, polypeptide 6 "	LOC_Os08g43440.1	"cytochrome P450, putative, expressed"	Medtr5g007570.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203182.1.S1_at	A	A1TS	POPTR_0003s11420	POPTR_0003s11420 (11)	scaffold_3:12232324-12232854(-) (11)	NA	NA	NA	AT4G12240.1	zinc finger (C2H2 type) family protein 	LOC_Os06g07020.1	"ZOS6-01 - C2H2 zinc finger protein, expressed"	Medtr3g104390.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203183.1.S1_at	A	A1TS	POPTR_0003s11460	POPTR_0003s11460 (10)	scaffold_3:12255963-12256733(+) (10)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT4G22730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203184.1.S1_at	A	A1TS	POPTR_0003s11500	POPTR_0003s11500 (11)	scaffold_3:12269291-12270212(-) (11)	NA	NA	NA	AT4G22740.2	glycine-rich protein 	LOC_Os08g02460.1	expressed protein	Medtr8g106900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203185.1.S1_at	A	A1TS	POPTR_0003s11510	POPTR_0003s11510 (11)	scaffold_3:12282406-12282546(+) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.203185.1.S1_s_at	A	A1TS	POPTR_0003s11510	POPTR_0003s11510 (11)	scaffold_3:12281610-12282513(+) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.203186.1.S1_at	A	A1TS	POPTR_0003s11530	POPTR_0003s11530 (11)	scaffold_3:12299189-12299776(+) (11)	NA	NA	NA	AT1G12330.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g14500.1	expressed protein	Medtr4g156150.1	"Peptidase M14, carboxypeptidase A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203187.1.S1_at	A	A1TS	POPTR_0003s11560	POPTR_0003s11560 (11)	scaffold_3:12346863-12347056(-) (11)	NA	NA	NA	AT1G62870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 351 Blast hits to 343 proteins in 42 species: Archae - 2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os02g25230.1	expressed protein	Medtr8g106660.1	"F5O11.10, putative "	NA	GO:0003677|DNA binding	NA
PtpAffx.203187.1.S1_s_at	A	A2TS	POPTR_0001s08040	POPTR_0001s08040 (10)//POPTR_0003s11560 (9)	scaffold_1:6108234-6108785(-) (11)//scaffold_3:12346797-12347333(-) (10)	NA	NA	NA	AT1G62870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 351 Blast hits to 343 proteins in 42 species: Archae - 2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os04g19140.1	expressed protein	Medtr8g106660.1	"F5O11.10, putative "	NA	GO:0003677|DNA binding	NA
PtpAffx.203188.1.S1_at	A	A1TS	POPTR_0003s11580	POPTR_0003s11580 (11)	scaffold_3:12382998-12383558(+) (11)	NA	P0C8Q5	Pentatricopeptide repeat-containing protein At4g22765	AT4G22760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g06490.2	"pentatricopeptide, putative, expressed"	Medtr8g139400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203189.1.S1_at	A	A1TS	POPTR_0003s11590	POPTR_0003s11590 (11)	scaffold_3:12387209-12388269(+) (11)	NA	Q56XJ7	Uncharacterized protein At4g22760	AT4G22758.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27830.1). 	LOC_Os02g25080.1	expressed protein	Medtr5g011930.1	"pentatricopeptide, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203189.1.S1_s_at	A	A1TS	POPTR_0003s11590	POPTR_0003s11590 (11)	scaffold_3:12387275-12388172(+) (11)	NA	Q56XJ7	Uncharacterized protein At4g22760	AT4G22758.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27830.1). 	LOC_Os02g25080.1	expressed protein	Medtr5g011930.1	"pentatricopeptide, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20319.1.S1_at	A	A1TS	POPTR_0005s25800	POPTR_0005s25800 (11)	scaffold_5:23979238-23980211(-) (11)	POPTR_0002s02630 (6)	P93024	Auxin response factor 5	AT1G19850.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os04g56850.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.203191.1.S1_at	A	A1TS	POPTR_0003s11620	POPTR_0003s11620 (11)	scaffold_3:12402602-12403009(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203192.1.S1_at	A	A1TS	POPTR_0003s11660	POPTR_0003s11660 (11)	scaffold_3:12448390-12448915(-) (11)	NA	Q8K0H1	Multidrug and toxin extrusion protein 1	AT4G22790.1	MATE efflux family protein 	LOC_Os03g64150.1	"MATE efflux family protein, putative, expressed"	Medtr5g011710.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.203193.1.S1_at	A	A1MS	POPTR_0003s11670	POPTR_0003s11670 (11)	scaffold_3:12457557-12457910(+) (11)	NA	Q9FYK2	Probable calcium-binding protein CML25	AT1G24620.1	EF hand calcium-binding protein family 	LOC_Os01g72100.1	"OsCML10 - Calmodulin-related calcium sensor protein, expressed"	AC233676_4.1	Calcium-binding EF-hand AC233676.2 19416-20012 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203194.1.S1_s_at	A	A1TS	POPTR_0003s11680	POPTR_0003s11680 (11)	scaffold_3:12470913-12471041(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT4G22810.1	Predicted AT-hook DNA-binding family protein 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	Medtr5g011670.1	Protein of unknown function DUF296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203195.1.S1_s_at	A	A2TS	POPTR_0001s08200	POPTR_0001s08200 (11)//POPTR_0003s11690 (11)	scaffold_1:6258057-6259294(-) (11)//scaffold_3:12479455-12480701(-) (11)	NA	Q9FZ06	Armadillo repeat-containing kinesin-like protein 3	AT1G12430.1	armadillo repeat kinesin 3 	LOC_Os06g04560.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.203196.1.S1_at	A	A1TS	POPTR_0003s11720	POPTR_0003s11720 (11)	scaffold_3:12514066-12515021(-) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT4G22840.1	Sodium Bile acid symporter family 	LOC_Os09g34900.1	"bile acid sodium symporter family protein, putative, expressed"	Medtr5g011580.1	Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.203197.1.S1_at	A	A1TS	POPTR_0003s11740	POPTR_0003s11740 (11)	scaffold_3:12531107-12531653(+) (11)	NA	C0LGE4	Probable LRR receptor-like serine/threonine-protein kinase At1g12460	AT1G12460.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g03570.2	"leucine-rich repeat transmembrane protein kinase, putative, expressed"	Medtr5g011540.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203198.1.S1_at	A	A1TS	POPTR_0003s11760	POPTR_0003s11760 (11)	scaffold_3:12532792-12533353(-) (11)	NA	Q9LQ10	Probable aminotransferase ACS10	AT1G62960.1	ACC synthase 10 	LOC_Os06g03990.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g011530.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.203199.1.S1_at	A	A1TS	POPTR_0003s11780	POPTR_0003s11780 (11)	scaffold_3:12551069-12551580(+) (11)	NA	Q41001	Blue copper protein	AT3G17675.1	Cupredoxin superfamily protein 	LOC_Os03g57740.1	"plastocyanin-like domain containing protein, putative"	Medtr7g102930.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.203200.1.S1_at	A	A1MS	POPTR_0003s11790	POPTR_0003s11790 (11)	scaffold_3:12556046-12556506(-) (11)	NA	Q5RKL7	Solute carrier family 35 member E4	AT1G12500.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr8g106450.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.203201.1.S1_at	A	A1TS	POPTR_0003s11840	POPTR_0003s11840 (11)	scaffold_3:12589719-12590239(+) (11)	NA	O65351	Subtilisin-like protease	AT1G04110.1	Subtilase family protein 	LOC_Os04g47160.1	"OsSub44 - Putative Subtilisin homologue, expressed"	Medtr5g011390.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.203202.1.S1_at	A	A1TS	POPTR_0003s11860	POPTR_0003s11860 (10)	scaffold_3:12606077-12606644(+) (11)	NA	O65351	Subtilisin-like protease	AT1G04110.1	Subtilase family protein 	LOC_Os03g02750.1	"OsSub25 - Putative Subtilisin homologue, expressed"	Medtr5g011380.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.203203.1.S1_at	A	A1TS	POPTR_0003s11870	POPTR_0003s11870 (11)	scaffold_3:12611772-12612326(+) (11)	NA	O65351	Subtilisin-like protease	AT1G04110.1	Subtilase family protein 	LOC_Os04g47160.1	"OsSub44 - Putative Subtilisin homologue, expressed"	Medtr5g011310.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.203204.1.S1_at	A	A1TS	POPTR_0003s11880	POPTR_0003s11880 (11)	scaffold_3:12613606-12613836(-) (11)	NA	NA	NA	AT1G12530.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56420.1); Has 54 Blast hits to 53 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g12720.1	expressed protein	Medtr1g100530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203205.1.S1_at	A	A1TS	POPTR_0003s11930	POPTR_0003s11930 (11)	scaffold_3:12648787-12649351(+) (11)	NA	NA	NA	AT4G22900.1	Protein of unknown function (DUF1191) 	LOC_Os12g02550.1	expressed protein	Medtr3g016260.1	Protein of unknown function DUF1191 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203206.1.S1_s_at	A	A1TS	POPTR_0003s11980	POPTR_0003s11980 (11)	scaffold_3:12684955-12685430(+) (11)	NA	Q2KJ22	Protein FAM63A	AT4G11860.1	Protein of unknown function (DUF544)      	LOC_Os06g49800.1	"ubiquitin interaction motif family protein, expressed"	Medtr5g011220.1	Protein of unknown function DUF544 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203206.1.S1_x_at	A	A1TS	POPTR_0003s11980	POPTR_0003s11980 (11)	scaffold_3:12684067-12686159(+) (11)	NA	Q2KJ22	Protein FAM63A	AT4G11860.1	Protein of unknown function (DUF544)      	LOC_Os06g49800.1	"ubiquitin interaction motif family protein, expressed"	Medtr5g011220.1	Protein of unknown function DUF544 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203207.1.S1_at	A	A1TS	POPTR_0003s12070	POPTR_0003s12070 (11)	scaffold_3:12758158-12758627(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203208.1.S1_at	A	A1TS	POPTR_0003s12080	POPTR_0003s12080 (11)	scaffold_3:12767916-12769176(+) (11)	NA	Q9M9V8	Calcium-dependent protein kinase 10	AT1G12580.1	phosphoenolpyruvate carboxylase-related kinase 1 	LOC_Os06g03682.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g129530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.20321.1.S1_at	A	A1TA	POPTR_0006s19930	POPTR_0006s19930 (11)	scaffold_6:18957275-18957770(-) (11)	NA	Q6ZCX3	Formin-like protein 6	AT5G58160.1	actin binding 	LOC_Os02g55170.1	"formin-like protein 13, putative"	Medtr8g145580.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203210.1.S1_at	A	A1TS	POPTR_0003s12110	POPTR_0003s12110 (11)	scaffold_3:12785924-12786709(-) (11)	NA	NA	NA	AT4G23020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11780.1); Has 146 Blast hits to 146 proteins in 40 species: Archae - 0; Bacteria - 16; Metazoa - 17; Fungi - 4; Plants - 67; Viruses - 20; Other Eukaryotes - 22 (source: NCBI BLink). 	LOC_Os03g02660.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203211.1.S1_at	A	A1TS	POPTR_0003s12110	POPTR_0003s12110 (11)	scaffold_3:12787782-12788294(-) (11)	NA	NA	NA	AT4G23020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11780.1); Has 146 Blast hits to 146 proteins in 40 species: Archae - 0; Bacteria - 16; Metazoa - 17; Fungi - 4; Plants - 67; Viruses - 20; Other Eukaryotes - 22 (source: NCBI BLink). 	LOC_Os03g02660.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203212.1.S1_at	A	A1TS	POPTR_0003s12120	POPTR_0003s12120 (11)	scaffold_3:12803381-12803868(-) (11)	NA	Q9FJ90	Ethylene-responsive transcription factor ERF025	AT5G52020.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g45420.1	"AP2 domain containing protein, expressed"	Medtr1g129460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203213.1.S1_at	A	A1TS	POPTR_0003s12140	POPTR_0003s12140 (11)	scaffold_3:12814552-12815135(+) (11)	NA	Q5I0E9	Multidrug and toxin extrusion protein 1	AT4G23030.1	MATE efflux family protein 	LOC_Os02g45380.1	"MATE domain containing protein, expressed"	Medtr5g010990.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.203214.1.S1_at	A	A1TS	POPTR_0003s12150	POPTR_0003s12150 (11)	scaffold_3:12827329-12828077(-) (11)	NA	NA	NA	AT5G52060.1	BCL-2-associated athanogene 1 	LOC_Os09g35630.1	"BAG domain-containing protein, putative, expressed"	Medtr1g129370.1	"Ubiquitin; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.203216.1.S1_x_at	A	A1TS	POPTR_0003s12220	POPTR_0003s12220 (11)	scaffold_3:12877425-12877590(+) (11)	NA	NA	NA	AT5G48120.1	ARM repeat superfamily protein 	NA	NA	Medtr5g093260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203217.1.S1_at	A	A1TS	POPTR_0003s12230	POPTR_0003s12230 (11)	scaffold_3:12883882-12883991(+) (11)	NA	NA	NA	AT4G11740.1	Ubiquitin-like superfamily protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203218.1.S1_at	A	A1TS	POPTR_0003s12240	POPTR_0003s12240 (11)	scaffold_3:12887664-12888214(+) (11)	NA	Q9CAN3	Scarecrow-like protein 28	AT1G63100.1	GRAS family transcription factor 	LOC_Os06g03710.1	"DELLA protein SLR1, putative, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203218.1.S1_x_at	A	A1TS	POPTR_0003s12240	POPTR_0003s12240 (11)	scaffold_3:12887664-12888214(+) (11)	NA	Q9CAN3	Scarecrow-like protein 28	AT1G63100.1	GRAS family transcription factor 	LOC_Os06g03710.1	"DELLA protein SLR1, putative, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203219.1.S1_at	A	A1TS	POPTR_0003s12250	POPTR_0003s12250 (11)	scaffold_3:12897180-12898327(+) (11)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.203220.1.S1_at	A	A1TS	POPTR_0003s12260	POPTR_0003s12260 (11)	scaffold_3:12899250-12900563(-) (11)	NA	NA	NA	AT4G11720.1	hapless 2 	LOC_Os09g35720.1	"generative cell specific-1, putative"	Medtr5g010930.1	"generative cell specific-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203221.1.S1_at	A	A1TS	POPTR_0003s12270	POPTR_0003s12270 (11)	scaffold_3:12910798-12912379(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT4G23050.2	PAS domain-containing protein tyrosine kinase family protein 	LOC_Os12g37570.1	"protein kinase family protein, putative, expressed"	Medtr5g010910.1	PAS; Protein kinase; 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203223.1.S1_at	A	A1TS	POPTR_0003s12310	POPTR_0003s12310 (11)	scaffold_3:12931414-12931962(-) (11)	NA	Q6GMF8	Rhomboid family member 1	AT1G63120.1	RHOMBOID-like 2 	LOC_Os03g02530.1	"OsRhmbd7 - Putative Rhomboid homologue, expressed"	Medtr1g129260.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.203224.1.S1_at	A	A1TS	POPTR_0003s12350	POPTR_0003s12350 (10)	scaffold_3:12952220-12952731(+) (11)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT4G11680.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os02g45240.1	"zinc finger family protein, putative, expressed"	Medtr5g010900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203225.1.S1_at	A	A1TS	POPTR_0003s12370	POPTR_0003s12370 (11)	scaffold_3:12965230-12965796(+) (11)	NA	Q8W4E1	"DEAD-box ATP-dependent RNA helicase 47, mitochondrial"	AT1G12770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g12000.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC146793_9.1	"Helicase, C-terminal; ; AC146793.7 47553-38999 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.203226.1.S1_at	A	A1TS	POPTR_0003s12390	POPTR_0003s12390 (11)	scaffold_3:12976616-12977994(-) (11)	NA	Q9S7G7	Myb-related protein 3R-1	AT4G32730.2	Homeodomain-like protein 	LOC_Os12g13570.1	"MYB family transcription factor, putative, expressed"	Medtr7g068380.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203228.1.S1_at	A	A1TS	POPTR_0003s12400	POPTR_0003s12400 (11)	scaffold_3:12980726-12981316(+) (11)	NA	NA	NA	AT4G20330.1	"Transcription initiation factor TFIIE, beta subunit "	LOC_Os10g25770.2	"transcription initiation factor IIE subunit beta, putative, expressed"	Medtr5g010780.4	"transcription initiation factor-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203229.1.S1_at	A	A1TS	POPTR_0003s12430	POPTR_0003s12430 (11)	scaffold_3:13000947-13001365(-) (11)	NA	Q9JZ44	30S ribosomal protein S1	AT1G12800.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os02g02390.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g104300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.203230.1.S1_at	A	A1TS	POPTR_0003s12440	POPTR_0003s12440 (11)	scaffold_3:13008452-13009929(-) (11)	NA	P29675	Pollen-specific protein SF3	AT3G61230.1	GATA type zinc finger transcription factor family protein 	LOC_Os02g42820.1	"OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.203230.1.S1_s_at	A	A1TS	POPTR_0003s12440	POPTR_0003s12440 (11)	scaffold_3:13008505-13009589(-) (11)	NA	P29675	Pollen-specific protein SF3	AT3G61230.1	GATA type zinc finger transcription factor family protein 	LOC_Os02g42820.1	"OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.203231.1.S1_at	A	A1TS	POPTR_0003s12460	POPTR_0003s12460 (11)	scaffold_3:13022234-13022387(-) (11)	NA	Q9ZVL3	Nuclear transcription factor Y subunit C-3	AT1G54830.3	"nuclear factor Y, subunit C3 "	LOC_Os04g58680.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr2g095930.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.203233.1.S1_at	A	A1TS	POPTR_0003s12510	POPTR_0003s12510 (11)	scaffold_3:13064553-13064784(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g36200.1	"heavy metal-associated domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203234.1.S1_at	A	A1TS	POPTR_0003s12520	POPTR_0003s12520 (11)	scaffold_3:13073323-13073556(+) (11)	NA	Q9SH27	Protein LURP-one-related 4	AT1G63410.1	Protein of unknown function (DUF567) 	LOC_Os07g47540.1	"DUF567 domain containing protein, putative, expressed"	Medtr4g149680.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203235.1.S1_at	A	A1TS	POPTR_0003s12530	POPTR_0003s12530 (11)	scaffold_3:13078814-13079587(+) (11)	NA	Q9LUM1	Protein LURP-one-related 11	AT3G14260.1	Protein of unknown function (DUF567) 	LOC_Os07g47540.1	"DUF567 domain containing protein, putative, expressed"	Medtr4g149680.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203236.1.S1_at	A	A1TS	POPTR_0003s12550	POPTR_0003s12550 (11)	scaffold_3:13089859-13090341(+) (11)	NA	Q6EUH7	Actin-depolymerizing factor 1	AT4G00680.1	actin depolymerizing factor 8 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr4g149600.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.203238.1.S1_at	A	A1TS	POPTR_0003s12610	POPTR_0003s12610 (11)	scaffold_3:13134028-13134573(+) (11)	NA	Q7XJ98	Xyloglucan galactosyltransferase KATAMARI1	AT1G63450.1	root hair specific 8 	LOC_Os03g05110.1	"xyloglucan galactosyltransferase KATAMARI1, putative, expressed"	Medtr5g010470.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.203239.1.S1_x_at	A	A1TS	POPTR_0003s12630	POPTR_0003s12630 (11)	scaffold_3:13142391-13142756(-) (11)	NA	Q6H5X0	Putative ripening-related protein 2	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	Medtr7g084940.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203241.1.S1_at	A	A1TS	POPTR_0003s12660	POPTR_0003s12660 (11)	scaffold_3:13156706-13160035(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT1G63470.1	AT hook motif DNA-binding family protein 	LOC_Os02g57820.1	"AT hook motif domain containing protein, expressed"	Medtr5g010440.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
PtpAffx.203243.1.S1_at	A	A1TS	POPTR_0003s12730	POPTR_0003s12730 (11)	scaffold_3:13226507-13226981(+) (11)	NA	NA	NA	AT5G41270.1	"CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os01g35990.1	"RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed"	AC233657_24.1	"RNAse P, Rpr2/Rpp21 subunit AC233657.1 132664-136953 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203244.1.S1_at	A	A1TS	POPTR_0003s12760	POPTR_0003s12760 (11)	scaffold_3:13243495-13244022(+) (11)	NA	NA	NA	AT4G11450.1	Protein of unknown function (DUF3527) 	LOC_Os10g40324.1	expressed protein	Medtr4g149400.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203245.1.S1_at	A	A1TS	POPTR_0003s12770	POPTR_0003s12770 (11)	scaffold_3:13246007-13248353(-) (11)	NA	Q55DY8	Mitoferrin	AT4G11440.1	Mitochondrial substrate carrier family protein 	LOC_Os02g44570.2	"mitochondrial carrier protein, putative, expressed"	Medtr4g149370.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203246.1.S1_at	A	A1TS	POPTR_0003s12780	POPTR_0003s12780 (11)	scaffold_3:13251617-13252153(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g38140.1	"OsFBDUF58 - F-box and DUF domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203247.1.S1_at	A	A1TS	POPTR_0003s12790	POPTR_0003s12790 (11)	scaffold_3:13253762-13254990(-) (11)	NA	O81635	Kinesin-4	AT1G63640.2	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os01g54080.1	"kinesin motor protein-related, putative, expressed"	Medtr4g158250.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.203248.1.S1_at	A	A1TS	POPTR_0003s12800	POPTR_0003s12800 (11)	scaffold_3:13265550-13265825(+) (11)	NA	NA	NA	AT4G23330.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2365 (InterPro:IPR019314). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203248.1.S1_s_at	A	A1TS	POPTR_0003s12800	POPTR_0003s12800 (11)	scaffold_3:13265482-13265687(+) (11)	NA	NA	NA	AT4G23330.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2365 (InterPro:IPR019314). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203249.1.S1_at	A	A1TS	POPTR_0003s12810	POPTR_0003s12810 (10)	scaffold_3:13276220-13276999(+) (10)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47080.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.203250.1.S1_at	A	A1TS	POPTR_0003s12820	POPTR_0003s12820 (11)	scaffold_3:13279053-13279377(-) (11)	NA	Q9C971	Gibberellin 3-beta-dioxygenase 4	AT4G23340.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49194.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr7g087320.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.203251.1.S1_at	A	A1TS	POPTR_0003s12830	POPTR_0003s12830 (9)	scaffold_3:13284533-13284567(-) (9)	NA	O66601	GMP synthase [glutamine-hydrolyzing]	AT1G63660.1	"GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative "	LOC_Os08g23730.1	"class I glutamine amidotransferase, putative, expressed"	NA	NA	GO:0006177|GMP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003922|GMP synthase (glutamine-hydrolyzing) activity||GO:0005524|ATP binding	NA
PtpAffx.203251.1.S1_s_at	A	A1TS	POPTR_0003s12830	POPTR_0003s12830 (11)	scaffold_3:13283773-13284348(-) (11)	NA	O66601	GMP synthase [glutamine-hydrolyzing]	AT1G63660.1	"GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative "	LOC_Os08g23730.1	"class I glutamine amidotransferase, putative, expressed"	NA	NA	GO:0006177|GMP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003922|GMP synthase (glutamine-hydrolyzing) activity||GO:0005524|ATP binding	NA
PtpAffx.203252.1.S1_at	A	A1TS	POPTR_0003s12840	POPTR_0003s12840 (11)	scaffold_3:13290387-13291003(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203253.1.S1_at	A	A1TS	POPTR_0003s12850	POPTR_0003s12850 (11)	scaffold_3:13295880-13296403(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203254.1.S1_s_at	A	A1TS	POPTR_0003s12900	POPTR_0003s12900 (9)	scaffold_3:13333080-13334830(+) (10)	NA	Q9ERI6	Retinol dehydrogenase 14	AT4G23430.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	Medtr7g118280.1	"Retinol dehydrogenase 12, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203255.1.S1_at	A	A1TS	POPTR_0003s12920	POPTR_0003s12920 (9)	scaffold_3:13349770-13349807(-) (9)	NA	O23066	Cytochrome P450 86A2	AT1G63710.1	"cytochrome P450, family 86, subfamily A, polypeptide 7 "	LOC_Os02g44654.2	"cytochrome P450, putative, expressed"	Medtr8g031910.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.203255.1.S1_s_at	A	A1TS	POPTR_0003s12920	POPTR_0003s12920 (11)	scaffold_3:13349514-13350105(-) (11)	NA	O23066	Cytochrome P450 86A2	AT1G63710.1	"cytochrome P450, family 86, subfamily A, polypeptide 7 "	LOC_Os02g44654.2	"cytochrome P450, putative, expressed"	Medtr8g031910.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.203256.1.S1_at	A	A1TS	POPTR_0003s12970	POPTR_0003s12970 (11)	scaffold_3:13394867-13395369(+) (11)	NA	NA	NA	AT4G23440.1	Disease resistance protein (TIR-NBS class) 	LOC_Os01g55530.1	"AP003256-AK101847 - NBS/LRR genes that are S-rich,divergent TIR, divergent NBS, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203257.1.S1_at	A	A1TS	POPTR_0003s12990	POPTR_0003s12990 (11)	scaffold_3:13411904-13412486(-) (11)	NA	NA	NA	AT4G11400.1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein 	LOC_Os04g08410.1	"ELM2 domain containing protein, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.203258.1.S1_at	A	A1TS	POPTR_0003s13010	POPTR_0003s13010 (11)	scaffold_3:13425234-13425765(-) (11)	NA	O22042	Mitogen-activated protein kinase kinase kinase 3	AT5G55090.1	mitogen-activated protein kinase kinase kinase 15 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr2g005150.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203259.1.S1_s_at	A	A1TS	POPTR_0003s13040	POPTR_0003s13040 (11)	scaffold_3:13439891-13440767(-) (11)	NA	O81742	Beta-adaptin-like protein C	AT4G23460.1	Adaptin family protein 	LOC_Os03g23950.1	"adapitin protein, putative, expressed"	Medtr4g103980.1	"Adaptin, N-terminal; Alpha/gamma adaptin, C-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.20326.1.S1_at	A	A1TS	POPTR_0004s20970	POPTR_0004s20970 (11)	scaffold_4:20315580-20316113(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT3G11590.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). 	LOC_Os04g31400.1	expressed protein	Medtr2g107440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203260.1.S1_at	A	A1TS	POPTR_0003s13050	POPTR_0003s13050 (11)	scaffold_3:13459505-13460585(-) (11)	NA	NA	NA	AT5G41380.1	CCT motif family protein 	LOC_Os05g38990.1	"CCT motif family protein, expressed"	Medtr5g010230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203261.1.S1_at	A	A1TS	POPTR_0003s13060	POPTR_0003s13060 (11)	scaffold_3:13463992-13464869(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203262.1.S1_at	A	A1MS	POPTR_0003s13080	POPTR_0003s13080 (11)	scaffold_3:13476956-13477504(-) (11)	NA	Q9SUS5	E3 ubiquitin-protein ligase RHA1B	AT1G63840.1	RING/U-box superfamily protein 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203263.1.S1_at	A	A1TS	POPTR_0003s13140	POPTR_0003s13140 (11)	scaffold_3:13542624-13543702(+) (11)	NA	NA	NA	AT5G41470.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os03g64380.1	expressed protein	Medtr5g010150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203264.1.S1_at	A	A1TS	POPTR_0003s13200	POPTR_0003s13200 (11)	scaffold_3:13597158-13597724(+) (11)	NA	NA	NA	AT1G63930.1	from the Czech 'roh' meaning 'corner' 	LOC_Os02g01930.1	expressed protein	Medtr1g125110.1	Protein of unknown function DUF793 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203265.1.S1_at	A	A1TS	POPTR_0003s13210	POPTR_0003s13210 (11)	scaffold_3:13606744-13606999(+) (11)	NA	NA	NA	AT1G01490.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g38870.1	"heavy metal-associated domain containing protein, expressed"	Medtr1g126180.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.203266.1.S1_at	A	A1TS	POPTR_0003s13260	POPTR_0003s13260 (11)	scaffold_3:13649861-13650513(+) (11)	NA	NA	NA	AT3G47910.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	NA	NA	Medtr7g123900.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203267.1.S1_at	A	A1TS	POPTR_0003s13290	POPTR_0003s13290 (11)	scaffold_3:13672757-13673366(+) (11)	NA	NA	NA	AT1G64050.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os02g16600.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203268.1.S1_at	A	A1TS	POPTR_0003s13300	POPTR_0003s13300 (11)	scaffold_3:13678235-13678952(-) (11)	NA	A0MFL4	Protein LURP-one-related 17	AT5G41590.1	Protein of unknown function (DUF567) 	LOC_Os05g40630.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126520.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203269.1.S1_at	A	A1MS	POPTR_0003s13310	POPTR_0003s13310 (11)	scaffold_3:13707178-13707952(+) (11)	NA	Q948U0	Respiratory burst oxidase homolog protein A	AT1G64060.1	respiratory burst oxidase protein F 	LOC_Os05g45210.3	"respiratory burst oxidase, putative, expressed"	Medtr1g099800.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.20327.1.A1_at	A	A1TS	POPTR_0003s10680	POPTR_0003s10680 (11)	scaffold_3:11595092-11595534(+) (11)	NA	Q9FII5	Leucine-rich repeat receptor-like protein kinase TDR	AT5G61480.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g05290.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g117050.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203270.1.S1_at	A	A1TS	POPTR_0003s13320	POPTR_0003s13320 (11)	scaffold_3:13713797-13714077(+) (11)	NA	NA	NA	AT2G46150.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g53470.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr8g005060.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.203271.1.S1_at	A	A1TS	POPTR_0003s13330	POPTR_0003s13330 (11)	scaffold_3:13721183-13721822(-) (11)	NA	NA	NA	AT1G64080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52870.1); Has 1546 Blast hits to 738 proteins in 176 species: Archae - 0; Bacteria - 143; Metazoa - 278; Fungi - 131; Plants - 95; Viruses - 4; Other Eukaryotes - 895 (source: NCBI BLink). 	LOC_Os01g12640.2	expressed protein	Medtr5g009970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203272.1.S1_at	A	A1MS	POPTR_0003s13350	POPTR_0003s13350 (10)	scaffold_3:13748399-13749098(-) (10)	NA	Q9P7J5	Uncharacterized AAA domain-containing protein C24B10.10c	AT1G64110.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g12660.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g009960.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.203273.1.S1_at	A	A1TS	POPTR_0003s13370	POPTR_0003s13370 (11)	scaffold_3:13766165-13766300(-) (11)	NA	Q9FE38	Potassium transporter 3	AT4G23640.1	Potassium transporter family protein 	LOC_Os01g70940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.203274.1.S1_at	A	A1TS	POPTR_0003s13390	POPTR_0003s13390 (10)	scaffold_3:13792119-13792557(+) (11)	NA	Q9LS46	Aluminum-activated malate transporter 9	AT3G18440.1	aluminum-activated malate transporter 9 	LOC_Os01g12210.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203275.1.S1_at	A	A1TS	POPTR_0003s13410	POPTR_0003s13410 (11)	scaffold_3:13811736-13813798(-) (11)	NA	Q94AX5	"UPF0016 protein 1, chloroplastic"	AT1G64150.1	Uncharacterized protein family (UPF0016) 	LOC_Os11g34180.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr5g009920.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
PtpAffx.203276.1.S1_at	A	A1TS	POPTR_0003s13430	POPTR_0003s13430 (11)	scaffold_3:13820370-13821459(+) (11)	NA	P13240	Disease resistance response protein 206	AT4G23690.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44930.1	"dirigent, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203277.1.S1_at	A	A1TS	POPTR_0832s00200	POPTR_0832s00200 (11)	scaffold_832:1855-2255(+) (11)	NA	P13240	Disease resistance response protein 206	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44250.1	"dirigent, putative, expressed"	Medtr8g137520.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203278.1.S1_at	A	A1TS	POPTR_0003s13470	POPTR_0003s13470 (11)	scaffold_3:13842634-13842929(-) (11)	NA	Q9FFR9	Cation/H(+) antiporter 18	AT5G41610.1	cation/H+ exchanger 18 	LOC_Os05g19500.1	"ATCHX, putative, expressed"	Medtr5g009880.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.203279.1.S1_at	A	A1TS	POPTR_0003s13500	POPTR_0003s13500 (10)	scaffold_3:13869706-13870476(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g12230.1	"peptidase C45, acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase, putative, expressed"	NA	NA	GO:0042318|penicillin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process	NA	NA
PtpAffx.203280.1.S1_at	A	A1TS	POPTR_0003s13520	POPTR_0003s13520 (11)	scaffold_3:13896294-13896605(+) (11)	NA	NA	NA	AT4G23720.1	Protein of unknown function (DUF1191) 	LOC_Os12g02550.1	expressed protein	Medtr5g083560.1	Protein of unknown function DUF1191 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203281.1.S1_at	A	A1TS	POPTR_0003s13530	POPTR_0003s13530 (9)	scaffold_3:13898467-13899063(-) (11)	NA	A1E2I4	Interferon-induced GTP-binding protein Mx1	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.203282.1.S1_at	A	A1TS	POPTR_0003s13540	POPTR_0003s13540 (11)	scaffold_3:13902940-13903167(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT5G41670.2	6-phosphogluconate dehydrogenase family protein 	LOC_Os11g29400.1	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.203282.1.S1_x_at	A	A1TS	POPTR_0003s13540	POPTR_0003s13540 (11)	scaffold_3:13902688-13903163(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT5G41670.2	6-phosphogluconate dehydrogenase family protein 	LOC_Os11g29400.1	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.203283.1.S1_at	A	A1TS	POPTR_0003s13550	POPTR_0003s13550 (10)	scaffold_3:13909190-13909929(-) (11)	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.203284.1.S1_at	A	A1TS	POPTR_0003s13560	POPTR_0003s13560 (11)	scaffold_3:13914223-13915231(-) (11)	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.203286.1.S1_at	A	A1TS	POPTR_0003s13570	POPTR_0003s13570 (10)	scaffold_3:13926401-13927221(-) (11)	NA	A9HF18	Translation initiation factor IF-2	AT4G11160.1	"Translation initiation factor 2, small GTP-binding protein "	LOC_Os09g34010.1	expressed protein	Medtr5g033550.1	"Elongation factor Tu, domain 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203287.1.S1_at	A	A1TS	POPTR_0003s13610	POPTR_0003s13610 (11)	scaffold_3:13959616-13960214(+) (11)	NA	Q9SUQ2	Ethylene-responsive transcription factor CRF2	AT4G23750.2	cytokinin response factor 2 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr3g124710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203288.1.S1_at	A	A1TS	POPTR_0003s13660	POPTR_0003s13660 (10)	scaffold_3:13982725-13984135(-) (10)	NA	P78382	CMP-sialic acid transporter	AT5G41760.2	Nucleotide-sugar transporter family protein 	LOC_Os06g33210.1	"UAA transporter family domain containing protein, expressed"	Medtr7g143690.1	UDP-galactose transporter; Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
PtpAffx.203288.1.S1_s_at	A	A1TS	POPTR_0003s13660	POPTR_0003s13660 (11)	scaffold_3:13982774-13983457(-) (11)	NA	P78382	CMP-sialic acid transporter	AT5G41760.2	Nucleotide-sugar transporter family protein 	LOC_Os06g33210.1	"UAA transporter family domain containing protein, expressed"	Medtr7g143690.1	UDP-galactose transporter; Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
PtpAffx.203289.1.S1_at	A	A1MS	POPTR_0003s13670	POPTR_0003s13670 (10)	scaffold_3:13989286-13989638(+) (11)	NA	P33629	Tubulin alpha chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203290.1.S1_at	A	A1TS	POPTR_0003s13680	POPTR_0003s13680 (11)	scaffold_3:13996110-13996474(+) (11)	NA	P25848	Light-sensor Protein kinase	AT1G64300.2	Protein kinase family protein 	LOC_Os01g43350.1	"protein kinase family protein, putative, expressed"	Medtr5g009670.1	Protein kinase-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203291.1.S1_at	A	A1TS	POPTR_0003s13690	POPTR_0003s13690 (11)	scaffold_3:13998111-13998927(-) (11)	NA	Q9T014	Protein SPA1-RELATED 2	AT4G11110.1	SPA1-related 2 	LOC_Os05g49590.2	"suppressor of phythchrome A, putative, expressed"	Medtr5g009560.1	Protein kinase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203292.1.S1_at	A	A1TS	POPTR_0003s13710	POPTR_0003s13710 (11)	scaffold_3:14021478-14021899(+) (11)	NA	NA	NA	AT1G64320.1	myosin heavy chain-related 	NA	NA	Medtr5g009510.1	hypothetical protein 	GO:0016032|viral reproduction	NA	NA
PtpAffx.203294.1.S1_at	A	A1TS	POPTR_0003s13740	POPTR_0003s13740 (11)	scaffold_3:14043824-14044871(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203295.1.S1_s_at	A	A1TS	POPTR_0003s13780	POPTR_0003s13780 (11)	scaffold_3:14070279-14070799(+) (11)	NA	Q9T012	High mobility group B protein 13	AT4G11080.1	HMG (high mobility group) box protein 	LOC_Os02g15810.1	"HMG1/2, putative, expressed"	Medtr5g024160.1	HMG1/2 (high mobility group) box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.203296.1.S1_at	A	A1TS	POPTR_0003s13810	POPTR_0003s13810 (11)	scaffold_3:14086477-14087220(+) (11)	NA	A7YY75	Nucleoporin SEH1	AT1G64350.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g43250.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g076630.1	"seh1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203297.1.S1_at	A	A1TS	POPTR_0003s13840	POPTR_0003s13840 (11)	scaffold_3:14095563-14095786(-) (11)	NA	Q8H0Y8	Probable WRKY transcription factor 41	AT4G11070.1	WRKY family transcription factor 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.203298.1.S1_at	A	A1TS	POPTR_0003s13870	POPTR_0003s13870 (11)	scaffold_3:14113380-14114593(-) (11)	NA	Q9C9Y8	Probable inactive receptor kinase At3g08680	AT3G08680.2	Leucine-rich repeat protein kinase family protein 	LOC_Os03g50450.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr4g154640.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203299.1.S1_x_at	A	A1TS	POPTR_0003s13880	POPTR_0003s13880 (11)	scaffold_3:14118664-14119290(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203300.1.S1_s_at	A	A1TS	POPTR_0003s13940	POPTR_0003s13940 (11)	scaffold_3:14175837-14176443(+) (11)	NA	Q42059	Endoglucanase 6	AT1G64390.1	glycosyl hydrolase 9C2 	LOC_Os01g12070.1	"endoglucanase precursor, putative, expressed"	Medtr5g093090.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0030246|carbohydrate binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0005576|extracellular region
PtpAffx.203301.1.S1_at	A	A1TS	POPTR_0003s13960	POPTR_0003s13960 (11)	scaffold_3:14195074-14195532(-) (11)	NA	Q9SKD3	Mitochondrial inner membrane protein OXA1-like	AT2G46470.1	inner membrane protein OXA1-like 	NA	NA	AC233677_14.1	60 kDa inner membrane insertion protein AC233677.2 80748-73714 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203303.1.S1_s_at	A	A2TS	POPTR_0003s14000	POPTR_0003s14020 (11)//POPTR_0003s14000 (11)	scaffold_3:14212430-14212809(-) (11)//scaffold_3:14221411-14221790(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g009330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203304.1.S1_at	A	A1TS	POPTR_0003s14010	POPTR_0003s14010 (11)	scaffold_3:14219071-14219470(-) (11)	NA	D2XNR2	Flotillin-like protein 6	AT5G25250.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	NA	NA	Medtr1g099720.1	"nodulin, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203304.1.S1_s_at	A	A1TS	POPTR_0003s14010	POPTR_0003s14010 (11)	scaffold_3:14219471-14219847(-) (11)	NA	D2XNR2	Flotillin-like protein 6	AT5G25250.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	NA	NA	Medtr1g099720.1	"nodulin, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203307.1.S1_at	A	A1TS	POPTR_0003s14070	POPTR_0003s14070 (11)	scaffold_3:14255038-14256856(+) (11)	NA	NA	NA	AT1G64430.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os08g24390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203309.1.S1_at	A	A1TS	POPTR_0003s14130	POPTR_0003s14130 (11)	scaffold_3:14286218-14287475(-) (11)	NA	Q3HRP0	Calcineurin B-like protein 7	AT5G24270.2	Calcium-binding EF-hand family protein 	LOC_Os02g18880.1	"calcineurin B, putative, expressed"	Medtr3g124000.2	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203310.1.S1_at	A	A1TS	POPTR_0003s14170	POPTR_0003s14170 (11)	scaffold_3:14304840-14305215(+) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT1G64500.1	Glutaredoxin family protein 	LOC_Os01g13480.1	"glutaredoxin, putative, expressed"	Medtr7g127470.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.203310.1.S1_x_at	A	A1TS	POPTR_0003s14170	POPTR_0003s14170 (11)	scaffold_3:14304840-14305221(+) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT1G64500.1	Glutaredoxin family protein 	LOC_Os01g13480.1	"glutaredoxin, putative, expressed"	Medtr7g127470.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.203311.1.S1_at	A	A1TS	POPTR_0003s14210	POPTR_0003s14210 (11)	scaffold_3:14344747-14345324(+) (11)	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	NA	NA	Medtr2g042560.1	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203312.1.S1_at	A	A1TS	POPTR_0003s14220	POPTR_0003s14220 (11)	scaffold_3:14352240-14352606(+) (11)	POPTR_0003s14250 (6)	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.1	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr3g079520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.203313.1.S1_at	A	A1TS	POPTR_0003s14310	POPTR_0003s14310 (11)	scaffold_3:14411773-14412564(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT4G10850.1	Nodulin MtN3 family protein 	LOC_Os02g19820.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g109190.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203315.1.S1_at	A	A1TS	POPTR_0003s14410	POPTR_0003s14410 (11)	scaffold_3:14496880-14498092(+) (11)	NA	Q9ERI6	Retinol dehydrogenase 14	AT4G24050.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g03830.1	"retinol dehydrogenase, putative, expressed"	Medtr3g114440.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.203317.1.S1_at	A	A1TS	POPTR_0003s14480	POPTR_0003s14480 (11)	scaffold_3:14566614-14567376(+) (11)	NA	Q7XJU0	Uncharacterized basic helix-loop-helix protein At1g64625	AT2G27230.2	transcription factor-related 	LOC_Os02g45170.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203318.1.S1_at	A	A1TS	POPTR_0003s14510	POPTR_0003s14510 (11)	scaffold_3:14583467-14584065(+) (11)	NA	Q6GQ69	FAS-associated factor 2-B	AT4G10790.1	UBX domain-containing protein 	LOC_Os10g37630.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203319.1.S1_s_at	A	A1TS	POPTR_0003s14520	POPTR_0003s14520 (11)	scaffold_3:14592142-14592736(+) (11)	NA	Q944Q0	Serine/threonine-protein kinase WNK8	AT5G41990.1	with no lysine (K) kinase 8 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr3g109240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203320.1.S1_at	A	A1TS	POPTR_0003s14540	POPTR_0003s14540 (11)	scaffold_3:14602733-14603318(+) (11)	NA	O82485	Oligopeptide transporter 7	AT4G10770.1	oligopeptide transporter 7 	LOC_Os06g03540.1	"oligopeptide transporter, putative, expressed"	Medtr4g121720.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203321.1.S1_at	A	A1TS	POPTR_0003s14560	POPTR_0003s14560 (11)	scaffold_3:14610935-14611323(-) (11)	NA	B1LLJ9	2-keto-3-deoxy-L-rhamnonate aldolase	AT4G10750.1	Phosphoenolpyruvate carboxylase family protein 	LOC_Os09g36030.1	"4-hydroxy-2-oxovalerate aldolase, putative, expressed"	NA	NA	GO:0006725|cellular aromatic compound metabolic process	GO:0016830|carbon-carbon lyase activity	NA
PtpAffx.203322.1.S1_at	A	A1TS	POPTR_0003s14570	POPTR_0003s14570 (11)	scaffold_3:14612582-14613147(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203324.1.S1_at	A	A1TS	POPTR_0003s14665	POPTR_0003s14665 (10)	scaffold_3:14676038-14676237(+) (10)	NA	NA	NA	AT2G02540.1	homeobox protein 21 	LOC_Os12g10630.1	"ZF-HD protein dimerisation region containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203326.1.S1_at	A	A1TS	POPTR_0003s14710	POPTR_0003s14710 (11)	scaffold_3:14716313-14716793(+) (11)	NA	O49687	Transcription factor MYC4	AT4G17880.1	Basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.203327.1.S1_at	A	A1TS	POPTR_0003s14720	POPTR_0003s14720 (11)	scaffold_3:14728082-14730607(-) (11)	NA	NA	NA	AT4G24140.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g38860.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g103890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203329.1.S1_at	A	A1TS	POPTR_0003s14760	POPTR_0003s14760 (11)	scaffold_3:14751386-14751975(+) (11)	NA	NA	NA	AT4G24110.1	unknown protein; Has 76 Blast hits to 76 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g02300.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203330.1.S1_at	A	A1TS	POPTR_0003s14770	POPTR_0003s14770 (11)	scaffold_3:14754668-14755058(+) (11)	NA	NA	NA	AT3G20350.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50660.1); Has 15095 Blast hits to 11224 proteins in 1051 species: Archae - 223; Bacteria - 1586; Metazoa - 7000; Fungi - 1255; Plants - 746; Viruses - 40; Other Eukaryotes - 4245 (source: NCBI BLink). 	LOC_Os10g41300.1	expressed protein	Medtr3g068450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203331.1.S1_at	A	A1TS	POPTR_0003s14780	POPTR_0003s14780 (11)	scaffold_3:14766993-14767629(+) (11)	NA	C0LGH2	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	AT1G56145.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os08g10290.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203332.1.S1_at	A	A1TS	POPTR_0003s14800	POPTR_0003s14800 (11)	scaffold_3:14772373-14772563(-) (11)	NA	Q652J4	Probable potassium transporter 13	AT2G30070.1	potassium transporter 1 	LOC_Os06g45940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.203333.1.S1_at	A	A1TS	POPTR_0003s14820	POPTR_0003s14820 (11)	scaffold_3:14793102-14793679(+) (11)	NA	P76481	Uncharacterized protein yfbK	AT2G38970.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g56280.1	"zinc finger family protein, putative, expressed"	Medtr1g120670.1	"Zinc finger, RING-type; von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203334.1.S1_at	A	A1TS	POPTR_0003s14900	POPTR_0003s14900 (11)	scaffold_3:14840716-14841975(-) (11)	NA	Q9LVK9	Putative phospholipid-transporting ATPase 7	AT3G13900.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g36990.1	"phospholipid-transporting ATPase 4, putative, expressed"	Medtr2g120840.1	"ATPase, E1-E2 type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203335.1.S1_at	A	A1TS	POPTR_0003s14960	POPTR_0003s14960 (11)	scaffold_3:14872829-14872949(-) (11)	NA	P0C8S1	Probable disease resistance RPP8-like protein 2	AT5G43470.2	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os07g08890.1	"disease resistance protein RPM1, putative, expressed"	Medtr5g020990.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.203335.1.S1_s_at	A	A1TS	POPTR_0003s14960	POPTR_0003s14960 (11)	scaffold_3:14872519-14872789(-) (11)	NA	P0C8S1	Probable disease resistance RPP8-like protein 2	AT5G43470.2	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os07g08890.1	"disease resistance protein RPM1, putative, expressed"	Medtr5g020990.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.203336.1.S1_s_at	A	A2TS	POPTR_0003s14970	POPTR_0003s14970 (11)//POPTR_0003s14980 (11)	scaffold_3:14877410-14877918(+) (11)//scaffold_3:14887578-14888086(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g47030.1	"receptor protein kinase, putative"	AC233576_1.1	Protein kinase; AC233576.2 1048-3881 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203337.1.S1_s_at	A	A1TS	POPTR_0003s14960	POPTR_0003s14960 (11)	scaffold_3:14873262-14873604(-) (11)	NA	P0C8S1	Probable disease resistance RPP8-like protein 2	AT5G43470.2	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os07g08890.1	"disease resistance protein RPM1, putative, expressed"	Medtr5g020990.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.203338.1.S1_at	A	A1TS	POPTR_0003s14980	POPTR_0003s14980 (11)	scaffold_3:14884062-14884791(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g47030.1	"receptor protein kinase, putative"	AC233576_1.1	Protein kinase; AC233576.2 1048-3881 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203340.1.S1_s_at	A	A1TS	POPTR_0003s14960	POPTR_0003s14960 (11)	scaffold_3:14874536-14874919(-) (11)	NA	P0C8S1	Probable disease resistance RPP8-like protein 2	AT5G43470.2	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os07g08890.1	"disease resistance protein RPM1, putative, expressed"	Medtr5g020990.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.203341.1.S1_s_at	A	A1TS	POPTR_0003s15030	POPTR_0003s15030 (11)	scaffold_3:14929059-14929610(-) (11)	NA	Q9LW50	Ethylene-responsive transcription factor 2	AT4G17500.1	ethylene responsive element binding factor 1 	LOC_Os02g43790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr8g105160.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203342.1.S1_at	A	A1TS	POPTR_0003s15160	POPTR_0003s15160 (9)	scaffold_3:15025019-15025208(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203343.1.S1_s_at	A	A1TS	POPTR_0003s15220	POPTR_0003s15220 (11)	scaffold_3:15072491-15073717(-) (11)	NA	Q9Y253	DNA polymerase eta	AT5G44740.2	Y-family DNA polymerase H 	LOC_Os01g55300.1	"DNA-directed polymerase, putative, expressed"	AC235671_13.1	UMUC-like DNA-repair protein AC235671.2 55734-58183 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
PtpAffx.203344.1.S1_at	A	A1TS	POPTR_0003s15220	POPTR_0003s15220 (11)	scaffold_3:15076022-15077335(-) (11)	NA	Q9Y253	DNA polymerase eta	AT5G44740.2	Y-family DNA polymerase H 	LOC_Os01g55300.1	"DNA-directed polymerase, putative, expressed"	AC235671_13.1	UMUC-like DNA-repair protein AC235671.2 55734-58183 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
PtpAffx.203345.1.S1_at	A	A1TS	POPTR_0003s15240	POPTR_0003s15240 (11)	scaffold_3:15099490-15101829(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203346.1.S1_at	A	A2TS	POPTR_0003s15270	POPTR_0003s15280 (11)//POPTR_0003s15270 (11)	scaffold_3:15116331-15118077(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203347.1.S1_at	A	A1MS	POPTR_0003s15310	POPTR_0003s15310 (9)	scaffold_3:15134621-15135904(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203348.1.S1_at	A	A1TS	POPTR_0003s15350	POPTR_0003s15350 (11)	scaffold_3:15158165-15160279(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203349.1.S1_at	A	A1TS	POPTR_0003s15420	POPTR_0003s15420 (11)	scaffold_3:15203620-15204751(-) (11)	NA	Q9SCY2	"FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplastic"	AT5G45680.1	FK506-binding protein 13 	LOC_Os06g45340.2	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g140460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.203350.1.S1_at	A	A1TS	POPTR_0003s15440	POPTR_0003s15440 (11)	scaffold_3:15212476-15212965(+) (11)	NA	Q8LPH6	Transcription factor MYB86	AT3G12720.1	myb domain protein 67 	LOC_Os07g31470.1	"MYB family transcription factor, putative, expressed"	Medtr2g085800.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203351.1.S1_at	A	A1TS	POPTR_0003s15480	POPTR_0003s15480 (11)	scaffold_3:15230943-15231640(-) (11)	NA	Q9SY33	Peroxidase 7	AT1G30870.1	Peroxidase superfamily protein 	LOC_Os07g31610.1	"peroxidase precursor, putative, expressed"	Medtr8g148530.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.203353.1.S1_s_at	A	A1TS	POPTR_0007s01890	POPTR_0007s01890 (11)	scaffold_7:1089661-1090181(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203355.1.S1_at	A	A1TS	POPTR_0003s15540	POPTR_0003s15540 (11)	scaffold_3:15294898-15295439(-) (11)	NA	NA	NA	AT4G20190.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44660.1); Has 271 Blast hits to 209 proteins in 52 species: Archae - 0; Bacteria - 15; Metazoa - 63; Fungi - 14; Plants - 48; Viruses - 3; Other Eukaryotes - 128 (source: NCBI BLink). 	LOC_Os06g37600.1	expressed protein	Medtr8g084200.1	Glyceraldehyde 3-phosphate dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203356.1.S1_at	A	A1TS	POPTR_0003s15550	POPTR_0003s15550 (9)	scaffold_3:15297269-15297668(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203357.1.S1_at	A	A1TS	POPTR_0003s15560	POPTR_0003s15560 (11)	scaffold_3:15310363-15310952(-) (11)	NA	Q9SY29	Probable purine permease 4	AT1G30840.2	purine permease 4 	LOC_Os01g48800.1	"purine permease, putative, expressed"	Medtr3g150070.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.203359.1.S1_at	A	A1TS	POPTR_0003s15590	POPTR_0003s15590 (10)	scaffold_3:15338092-15338550(-) (11)	NA	Q9Y5N5	HemK methyltransferase family member 2	AT3G13440.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g60920.1	"Methyltransferase small domain containing protein, expressed"	Medtr4g025960.1	N-6 Adenine-specific DNA methylase; Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203360.1.S1_at	A	A1TS	POPTR_0003s15600	POPTR_0003s15600 (11)	scaffold_3:15340750-15342332(-) (11)	NA	Q9SYQ8	Receptor protein kinase CLAVATA1	AT4G20270.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g56270.2	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr5g097160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203362.1.S1_at	A	A1TS	POPTR_0003s15620	POPTR_0003s15620 (9)	scaffold_3:15361735-15362615(+) (9)	NA	NA	NA	AT4G20300.2	Protein of unknown function (DUF1639) 	LOC_Os01g48830.2	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203365.1.S1_at	A	A1TS	POPTR_0003s15640	POPTR_0003s15640 (11)	scaffold_3:15382242-15383582(+) (11)	NA	O54862	Membrane-bound transcription factor site-2 protease	AT4G20310.2	Peptidase M50 family protein 	LOC_Os01g46590.1	expressed protein	Medtr8g084110.1	Peptidase M50 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203366.1.S1_at	A	A1TS	POPTR_0003s15650	POPTR_0003s15650 (11)	scaffold_3:15415313-15415757(+) (11)	NA	Q54V77	CTP synthase	AT1G30820.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr8g084050.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.203367.1.S1_at	A	A1TS	POPTR_0003s15690	POPTR_0003s15690 (11)	scaffold_3:15438333-15438645(-) (11)	NA	Q9SSE8	Probable glycosyltransferase At3g07620	AT4G16745.2	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr7g102590.1	Exostosin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203368.1.S1_at	A	A1TS	POPTR_0003s15700	POPTR_0003s15700 (11)	scaffold_3:15443381-15444976(+) (11)	NA	NA	NA	AT5G47860.1	Protein of unknown function (DUF1350) 	LOC_Os04g33280.2	expressed protein	Medtr8g083960.1	Protein of unknown function DUF1350 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203369.1.S1_at	A	A1MS	POPTR_0381s00230	POPTR_0381s00230 (11)	scaffold_381:12165-12492(-) (11)	NA	Q0ITS8	60S ribosomal protein L10-1	AT1G26910.1	Ribosomal protein L16p/L10e family protein 	LOC_Os11g11390.1	"ribosomal protein, putative, expressed"	Medtr2g132470.1	Ribosomal protein L10E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203370.1.S1_at	A	A1TS	POPTR_0381s00240	POPTR_0381s00240 (11)	scaffold_3:15453779-15454003(-) (10)//scaffold_381:1092-1316(-) (9)//scaffold_381:15373-15596(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203371.1.S1_at	A	A1TS	POPTR_0003s15750	POPTR_0003s15750 (11)	scaffold_3:15472539-15473770(+) (11)	NA	Q68CP4	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G47900.1	Protein of unknown function (DUF1624) 	LOC_Os02g32504.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr1g107540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203372.1.S1_at	A	A1TS	POPTR_0003s15760	POPTR_0003s15760 (11)	scaffold_3:15474732-15475090(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203373.1.S1_at	A	A1TS	POPTR_0003s15770	POPTR_0003s15770 (11)	scaffold_3:15479369-15479930(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203373.1.S1_s_at	A	A1TS	POPTR_0003s15770	POPTR_0003s15770 (11)	scaffold_3:15479350-15479824(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203374.1.S1_at	A	A1TS	POPTR_0003s15810	POPTR_0003s15810 (10)	scaffold_3:15515979-15516144(+) (10)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G47910.1	respiratory burst oxidase homologue D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.203374.1.S1_x_at	A	A1TS	POPTR_0003s15810	POPTR_0003s15810 (10)	scaffold_3:15515949-15516144(+) (10)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G47910.1	respiratory burst oxidase homologue D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.203375.1.S1_at	A	A1TS	POPTR_0003s15820	POPTR_0003s15820 (11)	scaffold_3:15524695-15526314(-) (11)	NA	NA	NA	AT1G44960.1	SNARE associated Golgi protein family 	LOC_Os11g33100.1	"SNARE associated Golgi protein, putative, expressed"	Medtr7g006300.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203376.1.S1_at	A	A1MS	POPTR_0003s15840	POPTR_0003s15840 (9)	scaffold_3:15545785-15546228(+) (11)	NA	Q9SN39	"Pentatricopeptide repeat-containing protein At4g18750, chloroplastic"	AT4G18750.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g02200.1	"pentatricopeptide, putative, expressed"	Medtr4g134960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203377.1.S1_at	A	A1TS	POPTR_0003s15900	POPTR_0003s15900 (10)	scaffold_3:15569695-15571374(+) (10)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os08g42620.2	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr1g124850.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.203378.1.S1_at	A	A1TS	POPTR_0003s15910	POPTR_0003s15910 (9)	scaffold_3:15573886-15574384(-) (10)	NA	NA	NA	AT1G63060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07330.1); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os11g32890.1	expressed protein	Medtr5g006680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203379.1.S1_at	A	A1TS	POPTR_0003s15920	POPTR_0003s15920 (11)	scaffold_3:15578402-15579026(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203380.1.S1_at	A	A1TS	POPTR_0003s15930	POPTR_0003s15930 (11)	scaffold_3:15580177-15580817(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203381.1.S1_at	A	A1TS	POPTR_0003s15940	POPTR_0003s15940 (11)	scaffold_3:15582078-15582619(-) (11)	NA	Q9FZ90	Ethylene-responsive transcription factor ERF087	AT1G28160.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g32040.1	AP2 domain containing protein	Medtr8g139310.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203382.1.S1_at	A	A1TS	POPTR_0003s15950	POPTR_0003s15950 (11)	scaffold_3:15599643-15601212(-) (11)	NA	Q93ZY7	"Nudix hydrolase 12, mitochondrial"	AT1G12880.1	nudix hydrolase homolog 12 	LOC_Os11g32750.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g043270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.203383.1.S1_at	A	A1TS	POPTR_0003s15980	POPTR_0003s15980 (11)	scaffold_3:15632255-15632624(+) (11)	NA	NA	NA	AT5G13390.1	no exine formation 1 	LOC_Os11g32470.1	"NEF1, putative, expressed"	Medtr7g006260.1	"NEF1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203383.1.S1_s_at	A	A1TS	POPTR_0003s15980	POPTR_0003s15980 (11)	scaffold_3:15632567-15632821(+) (11)	NA	NA	NA	AT5G13390.1	no exine formation 1 	LOC_Os11g32470.1	"NEF1, putative, expressed"	Medtr7g006260.1	"NEF1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203383.1.S1_x_at	A	A1TS	POPTR_0003s15980	POPTR_0003s15980 (11)	scaffold_3:15632255-15632828(+) (11)	NA	NA	NA	AT5G13390.1	no exine formation 1 	LOC_Os11g32470.1	"NEF1, putative, expressed"	Medtr7g006260.1	"NEF1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203384.1.S1_at	A	A1TS	POPTR_0003s15990	POPTR_0003s15990 (11)	scaffold_3:15634102-15634405(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203385.1.S1_at	A	A1TS	POPTR_0003s16000	POPTR_0003s16000 (11)	scaffold_3:15638107-15638240(+) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G38895.2	RING/U-box superfamily protein 	LOC_Os01g70160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203386.1.S1_at	A	A1MS	POPTR_0003s16020	POPTR_0003s16020 (9)	scaffold_3:15651831-15653393(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203388.1.S1_x_at	A	A1TS	POPTR_0003s16110	POPTR_0003s16110 (11)	scaffold_3:15722452-15722844(-) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr7g020760.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.203389.1.S1_at	A	A1TS	POPTR_0003s16130	POPTR_0003s16130 (11)	scaffold_3:15751247-15752509(+) (11)	NA	Q8GZB6	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4"	AT5G13960.1	SU(VAR)3-9 homolog 4 	LOC_Os01g70220.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr7g097120.1	SET-related region; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.203390.1.S1_at	A	A1TS	POPTR_0003s16150	POPTR_0003s16150 (11)	scaffold_3:15761071-15762700(+) (11)	NA	NA	NA	AT2G33550.1	Homeodomain-like superfamily protein 	LOC_Os02g31160.1	"transcription factor, putative"	Medtr7g020740.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203392.1.S1_at	A	A1TS	POPTR_0003s16180	POPTR_0003s16180 (11)	scaffold_3:15791105-15791206(+) (11)	NA	Q9LYU7	Inactive leucine-rich repeat receptor-like protein kinase CORYNE	AT5G13290.2	Protein kinase superfamily protein 	LOC_Os01g70260.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr7g020720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203392.1.S1_x_at	A	A1TS	POPTR_0003s16180	POPTR_0003s16180 (11)	scaffold_3:15791012-15791206(+) (11)	NA	Q9LYU7	Inactive leucine-rich repeat receptor-like protein kinase CORYNE	AT5G13290.2	Protein kinase superfamily protein 	LOC_Os01g70260.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr7g020720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203393.1.S1_at	A	A1MS	POPTR_0003s16180	POPTR_0003s16180 (11)	scaffold_3:15792079-15792196(+) (11)	NA	Q9LYU7	Inactive leucine-rich repeat receptor-like protein kinase CORYNE	AT5G13290.2	Protein kinase superfamily protein 	LOC_Os01g70260.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr7g020720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203395.1.S1_at	A	A1TS	POPTR_0003s16210	POPTR_0003s16210 (11)	scaffold_3:15811632-15811762(+) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os01g70270.3	"auxin response factor, putative, expressed"	Medtr4g152210.2	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.203396.1.S1_at	A	A1TS	POPTR_0003s16220	POPTR_0003s16220 (11)	scaffold_3:15816020-15816176(+) (11)	NA	Q9LYU9	"Pentatricopeptide repeat-containing protein At5g13270, chloroplastic"	AT5G13270.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g38190.2	"pentatricopeptide, putative"	Medtr4g032250.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203396.1.S1_x_at	A	A1TS	POPTR_0003s16220	POPTR_0003s16220 (11)	scaffold_3:15816020-15816199(+) (11)	NA	Q9LYU9	"Pentatricopeptide repeat-containing protein At5g13270, chloroplastic"	AT5G13270.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g38190.2	"pentatricopeptide, putative"	Medtr4g032250.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203397.1.S1_at	A	A1TS	POPTR_0003s16250	POPTR_0003s16250 (11)	scaffold_3:15827727-15828684(-) (11)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr7g020920.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.203398.1.S1_at	A	A1TS	POPTR_0003s16290	POPTR_0003s16290 (11)	scaffold_3:15865603-15866931(-) (11)	NA	P44439	Probable poly(A) polymerase	AT1G28090.2	Polynucleotide adenylyltransferase family protein 	LOC_Os04g32490.2	"tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed"	Medtr4g152060.1	Polynucleotide adenylyltransferase region 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0016779|nucleotidyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.203399.1.S1_at	A	A1TS	POPTR_0003s16300	POPTR_0003s16300 (11)	scaffold_3:15877378-15878435(+) (11)	NA	Q93W88	Transcription factor bHLH137	AT5G50915.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g01256.2	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr4g152040.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.203400.1.S1_at	A	A1TS	POPTR_0003s16310	POPTR_0003s16310 (11)	scaffold_3:15883795-15884116(+) (11)	NA	NA	NA	AT3G48800.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os03g63320.1	"SAM domain containing protein, putative, expressed"	Medtr4g152000.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203401.1.S1_at	A	A1TS	POPTR_0003s16320	POPTR_0003s16320 (11)	scaffold_3:15887823-15887900(-) (11)	NA	NA	NA	AT5G13250.1	RING finger protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203402.1.S1_at	A	A1TS	POPTR_0003s16330	POPTR_0003s16330 (11)	scaffold_3:15893762-15895044(-) (11)	NA	NA	NA	AT5G13250.1	RING finger protein 	LOC_Os04g32510.1	expressed protein	Medtr7g021080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203403.1.S1_at	A	A1TS	POPTR_0003s16340	POPTR_0003s16340 (11)	scaffold_3:15919993-15920564(-) (11)	NA	Q9LYV3	"Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial"	AT5G13230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g32620.1	"pentatricopeptide, putative, expressed"	Medtr5g103280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203405.1.S1_at	A	A1TS	POPTR_0003s16440	POPTR_0003s16440 (11)	scaffold_3:16034902-16036705(+) (11)	NA	Q9C7E8	Zinc finger protein CONSTANS-LIKE 15	AT2G33500.2	B-box type zinc finger protein with CCT domain 	LOC_Os02g49230.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g096570.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.203407.1.S1_at	A	A1TS	POPTR_0003s16510	POPTR_0003s16510 (11)	scaffold_3:16100588-16101072(-) (11)	NA	Q62651	"Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial"	AT5G43280.2	"delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 "	LOC_Os01g70090.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr3g103380.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.203408.1.S1_at	A	A1TS	POPTR_0003s16520	POPTR_0003s16520 (11)	scaffold_3:16108202-16109148(+) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT5G13170.1	senescence-associated gene 29 	LOC_Os11g31190.1	"nodulin MtN3 family protein, putative, expressed"	Medtr7g005250.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203409.1.S1_at	A	A1TS	POPTR_0003s16540	POPTR_0003s16540 (11)	scaffold_3:16130885-16131265(+) (11)	NA	Q7G8Y5	Glutaredoxin-C1	AT5G14070.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g027340.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.203410.1.S1_at	A	A1TS	POPTR_0003s16560	POPTR_0003s16560 (11)	scaffold_3:16141766-16143713(-) (11)	NA	Q8BMD7	MORC family CW-type zinc finger protein 4	AT4G24970.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os02g27000.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	NA	GO:0005524|ATP binding	NA
PtpAffx.203411.1.S1_at	A	A1TS	POPTR_0003s16570	POPTR_0003s16570 (11)	scaffold_3:16148624-16149708(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203412.1.S1_at	A	A1TS	POPTR_0003s16590	POPTR_0003s16590 (11)	scaffold_3:16172475-16173433(+) (11)	NA	NA	NA	AT1G12060.1	BCL-2-associated athanogene 5 	LOC_Os02g48780.1	"IQ calmodulin-binding and BAG domain containing protein, putative, expressed"	Medtr7g022490.1	"IQ calmodulin-binding region; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.203413.1.S1_at	A	A1TS	POPTR_0003s16630	POPTR_0003s16630 (11)	scaffold_3:16200761-16201266(-) (11)	NA	Q9LSD5	Transcription factor TCP20	AT3G27010.1	"TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 "	LOC_Os01g69980.1	"TCP family transcription factor, putative, expressed"	Medtr7g018180.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203414.1.S1_at	A	A1TS	POPTR_0003s16660	POPTR_0003s16660 (11)	scaffold_3:16216955-16217504(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g27470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203415.1.S1_at	A	A1TS	POPTR_0003s16700	POPTR_0003s16700 (11)	scaffold_3:16240448-16241214(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203416.1.S1_at	A	A1TS	POPTR_0003s16710	POPTR_0003s16710 (11)	scaffold_3:16245211-16245806(+) (11)	NA	NA	NA	AT5G14090.1	unknown protein; Has 56 Blast hits to 56 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os11g29840.1	expressed protein	Medtr7g022300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203417.1.S1_at	A	A1TS	POPTR_0003s16740	POPTR_0003s16740 (11)	scaffold_3:16271553-16272384(+) (11)	NA	Q9FF46	ABC transporter G family member 28	AT5G60740.1	ABC transporter family protein 	LOC_Os11g22350.1	"white-brown complex homolog protein, putative, expressed"	Medtr1g120480.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.203418.1.S1_x_at	A	A1TS	POPTR_0003s16760	POPTR_0003s16760 (11)	scaffold_3:16292816-16293514(+) (11)	NA	NA	NA	AT1G24265.2	Protein of unknown function (DUF1664) 	LOC_Os01g01070.2	expressed protein	Medtr7g022170.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203419.1.S1_at	A	A1TS	POPTR_0003s16770	POPTR_0003s16770 (11)	scaffold_3:16297665-16299811(+) (11)	NA	Q84WJ2	Probable DNA primase large subunit	AT1G67320.2	"DNA primase, large subunit family "	LOC_Os07g22400.2	"POLA3 - Putative DNA polymerase alpha complex subunit, expressed"	Medtr4g147290.1	"Eukaryotic-type DNA primase, large subunit "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006269|""DNA replication, synthesis of RNA primer"""	GO:0003896|DNA primase activity	NA
PtpAffx.203421.1.S1_at	A	A1TS	POPTR_0003s16900	POPTR_0003s16900 (11)	scaffold_3:16409745-16409788(-) (11)	NA	NA	NA	AT5G08391.1	Protein of unknown function (DUF 3339) 	LOC_Os11g30360.1	expressed protein	Medtr4g147160.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203421.1.S1_x_at	A	A1TS	POPTR_0003s16900	POPTR_0003s16900 (11)	scaffold_3:16409689-16409821(-) (11)	NA	NA	NA	AT5G08391.1	Protein of unknown function (DUF 3339) 	LOC_Os11g30360.1	expressed protein	Medtr4g147160.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203422.1.S1_s_at	A	A1TS	POPTR_0003s16970	POPTR_0003s16970 (11)	scaffold_3:16469129-16469316(+) (11)	NA	Q8TBM8	DnaJ homolog subfamily B member 14	AT5G53150.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os03g28310.1	"dnaJ domain containing protein, expressed"	Medtr6g070440.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.203423.1.S1_at	A	A1TS	POPTR_0838s00200	POPTR_0838s00200 (11)	scaffold_3:16523405-16523559(-) (11)//scaffold_838:3103-3257(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203424.1.S1_at	A	A1TS	POPTR_0003s17040	POPTR_0003s17040 (11)	scaffold_3:16534585-16536694(-) (11)	NA	Q9SA98	Alpha-ketoglutarate-dependent dioxygenase alkB	AT1G11780.1	"oxidoreductase, 2OG-Fe(II) oxygenase family protein "	LOC_Os11g29690.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr3g103890.1	"Alkylated DNA repair protein alkB homolog, putative "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.203425.1.S1_at	A	A1TS	POPTR_0003s17050	POPTR_0003s17050 (11)	scaffold_3:16538283-16538842(+) (11)	NA	NA	NA	AT1G27385.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 76 Blast hits to 76 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g30410.2	expressed protein	Medtr3g103900.1	Protein of unknown function DUF493 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203426.1.S1_at	A	A1TS	POPTR_0003s17060	POPTR_0003s17060 (11)	scaffold_3:16544433-16545012(+) (11)	NA	NA	NA	AT5G51920.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os11g29630.1	expressed protein	Medtr3g150560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203427.1.S1_at	A	A1MA	POPTR_0003s17120	POPTR_0003s17120 (10)	scaffold_3:16571467-16572112(+) (10)	NA	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.203428.1.S1_at	A	A1TS	POPTR_0003s17120	POPTR_0003s17120 (11)	scaffold_3:16575568-16575956(-) (11)	NA	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.203429.1.S1_at	A	A1MS	POPTR_0003s17130	POPTR_0003s17130 (9)	scaffold_3:16581802-16582469(-) (9)	NA	Q9LQ12	4-coumarate--CoA ligase-like 1	AT1G62940.1	acyl-CoA synthetase 5 	LOC_Os04g24530.1	"AMP-binding domain containing protein, expressed"	AC233655_1.1	AMP-dependent synthetase and ligase AC233655.2 29515-24780 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.203430.1.S1_at	A	A1TS	POPTR_0003s17140	POPTR_0003s17140 (11)	scaffold_3:16594123-16594605(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203431.1.S1_at	A	A1TS	POPTR_0003s17160	POPTR_0003s17160 (11)	scaffold_3:16600990-16601063(-) (11)	NA	Q9FYF7	REF/SRPP-like protein At1g67360	AT1G67360.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr3g103750.2	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203432.1.S1_at	A	A1TS	POPTR_0003s17180	POPTR_0003s17180 (11)	scaffold_3:16620737-16621403(+) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203433.1.S1_at	A	A1TS	POPTR_0003s17200	POPTR_0003s17200 (11)	scaffold_3:16646296-16646782(+) (11)	NA	O65012	Cytochrome P450 78A4	AT1G74110.1	"cytochrome P450, family 78, subfamily A, polypeptide 10 "	LOC_Os11g29720.1	"cytochrome P450, putative, expressed"	Medtr5g047920.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.203434.1.S1_at	A	A1TS	POPTR_0003s17210	POPTR_0003s17210 (11)	scaffold_3:16649866-16651067(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203435.1.S1_at	A	A1TS	POPTR_0003s17290	POPTR_0003s17290 (11)	scaffold_3:16691092-16691630(+) (11)	NA	NA	NA	AT3G24020.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g05030.1	"dirigent, putative, expressed"	Medtr7g021120.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203436.1.S1_at	A	A1TS	POPTR_0003s17310	POPTR_0003s17310 (11)	scaffold_3:16695380-16695673(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203437.1.S1_at	A	A1TS	POPTR_0003s17370	POPTR_0003s17370 (11)	scaffold_3:16735167-16735499(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203438.1.S1_at	A	A1TS	POPTR_0003s17380	POPTR_0003s17380 (11)	scaffold_3:16738269-16738605(-) (11)	NA	NA	NA	AT3G24060.1	Plant self-incompatibility protein S1 family 	NA	NA	Medtr2g129570.1	Plant self-incompatibility S1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203439.1.S1_at	A	A1TS	POPTR_0003s17390	POPTR_0003s17390 (11)	scaffold_3:16740758-16741271(-) (11)	NA	NA	NA	AT1G04650.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g05040.1	expressed protein	Medtr1g111710.1	"Contains similarity to Chlamydia outer membrane protein, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203440.1.S1_at	A	A1TS	POPTR_0003s17400	POPTR_0003s17400 (11)	scaffold_3:16752252-16753433(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203441.1.S1_at	A	A1TS	POPTR_0003s17410	POPTR_0003s17410 (11)	scaffold_3:16755692-16756063(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203442.1.S1_at	A	A1TS	POPTR_0003s17420	POPTR_0003s17420 (11)	scaffold_3:16760121-16760641(+) (11)	NA	NA	NA	AT1G04670.1	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 2; Bacteria - 5; Metazoa - 1; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203444.1.S1_at	A	A1TS	POPTR_0003s17430	POPTR_0003s17430 (11)	scaffold_3:16764963-16765087(-) (11)	NA	Q9LHP4	Receptor-like protein kinase 2	AT3G24240.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g04330.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr5g048490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203445.1.S1_x_at	A	A1TS	POPTR_0003s17450	POPTR_0003s17450 (11)	scaffold_3:16780492-16781082(-) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203446.1.S1_at	A	A1TS	POPTR_0003s17460	POPTR_0003s17460 (11)	scaffold_3:16811629-16813540(+) (11)	NA	Q6TPH1	Purple acid phosphatase 23	AT4G13700.1	purple acid phosphatase 23 	LOC_Os08g17784.2	"purple acid phosphatase, putative, expressed"	Medtr6g013550.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.203447.1.S1_at	A	A1TS	POPTR_0003s17470	POPTR_0003s17470 (11)	scaffold_3:16821655-16822735(+) (11)	NA	Q55GU0	Probable serine/threonine-protein kinase DDB_G0267514	AT1G04700.1	PB1 domain-containing protein tyrosine kinase 	LOC_Os12g40279.1	"protein kinase domain containing protein, expressed"	Medtr1g111680.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203448.1.S1_at	A	A1TS	POPTR_0003s17490	POPTR_0003s17490 (11)	scaffold_3:16827517-16828037(-) (11)	NA	Q9LRM7	"9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic"	AT3G24220.1	nine-cis-epoxycarotenoid dioxygenase 6 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203449.1.S1_at	A	A1TS	POPTR_0003s17490	POPTR_0003s17490 (11)	scaffold_3:16829079-16829300(-) (11)	NA	Q9LRM7	"9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic"	AT3G24220.1	nine-cis-epoxycarotenoid dioxygenase 6 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203450.1.S1_at	A	A1MS	POPTR_0003s17500	POPTR_0003s17500 (11)	scaffold_3:16844546-16846088(+) (11)	NA	NA	NA	AT1G32550.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os03g48040.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr8g102770.1	Ferredoxin 	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.203451.1.S1_at	A	A1TS	POPTR_0003s17510	POPTR_0003s17510 (11)	scaffold_3:16850078-16855059(-) (11)	NA	Q9M2S6	E3 ubiquitin-protein ligase SDIR1	AT1G04790.1	RING/U-box superfamily protein 	LOC_Os04g43220.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g084200.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203452.1.S1_at	A	A1TS	POPTR_0003s17570	POPTR_0003s17570 (11)	scaffold_3:16904439-16905359(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203453.1.S1_at	A	A1TS	POPTR_0003s17600	POPTR_0003s17600 (11)	scaffold_3:16920470-16921379(-) (11)	NA	Q55680	Uncharacterized protein sll0005	AT3G24190.1	Protein kinase superfamily protein 	LOC_Os02g57160.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203454.1.S1_at	A	A1TS	POPTR_0003s17630	POPTR_0003s17630 (11)	scaffold_3:16931030-16931565(-) (11)	NA	O49323	Cellulose synthase-like protein D1	AT2G33100.1	cellulose synthase-like D1 	LOC_Os06g22980.1	"CSLD5 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.203455.1.S1_at	A	A1TS	POPTR_0003s17640	POPTR_0003s17640 (11)	scaffold_3:16938191-16940028(+) (11)	NA	NA	NA	AT4G13690.1	unknown protein; Has 37 Blast hits to 37 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	NA	NA	Medtr1g111670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203456.1.S1_at	A	A2TS	POPTR_0003s17740	POPTR_0003s17740 (11)//POPTR_0003s17730 (10)	scaffold_3:17028839-17029572(-) (10)//scaffold_3:17041411-17042144(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.203458.1.S1_at	A	A1TS	POPTR_0003s17760	POPTR_0003s17760 (11)	scaffold_3:17061328-17061979(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203460.1.S1_s_at	A	A1TS	POPTR_0003s17780	POPTR_0003s17780 (11)	scaffold_3:17071474-17071658(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203461.1.S1_at	A	A1TS	POPTR_0003s17800	POPTR_0003s17800 (11)	scaffold_3:17077456-17077994(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g37190.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203462.1.S1_at	A	A1MS	POPTR_0003s17810	POPTR_0003s17810 (10)	scaffold_3:17080373-17081119(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203463.1.S1_at	A	A1TS	POPTR_0003s17820	POPTR_0003s17820 (11)	scaffold_3:17083004-17083857(-) (11)	NA	Q7XPY2	Plasma membrane ATPase	AT1G80660.1	H(+)-ATPase 9 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.203465.1.S1_at	A	A1TS	POPTR_0003s17860	POPTR_0003s17860 (11)	scaffold_3:17116520-17116921(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203467.1.S1_at	A	A1MS	POPTR_0003s17890	POPTR_0003s17890 (11)	scaffold_3:17135089-17135413(+) (11)	NA	NA	NA	AT1G80700.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80980.1); Has 476 Blast hits to 340 proteins in 85 species: Archae - 2; Bacteria - 44; Metazoa - 84; Fungi - 36; Plants - 40; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink). 	LOC_Os08g17610.1	expressed protein	Medtr8g070810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203468.1.S1_at	A	A1TS	POPTR_0003s17930	POPTR_0003s17930 (11)	scaffold_3:17164658-17166621(-) (11)	NA	Q9SAI4	Aquaporin NIP6-1	AT1G80760.1	NOD26-like intrinsic protein 6;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.203469.1.S1_at	A	A1TS	POPTR_0003s17940	POPTR_0003s17940 (11)	scaffold_3:17177845-17178826(+) (11)	NA	NA	NA	AT1G15910.1	XH/XS domain-containing protein 	LOC_Os01g44230.1	"transcription factor X1, putative, expressed"	Medtr8g145980.1	"Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203470.1.S1_at	A	A1TS	POPTR_0003s17970	POPTR_0003s17970 (11)	scaffold_3:17200450-17201248(+) (11)	NA	Q4VA53	Sister chromatid cohesion protein PDS5 homolog B	AT1G80810.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os02g39920.1	"AT hook motif family protein, expressed"	Medtr4g022190.1	"binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203471.1.S1_s_at	A	A2TS	POPTR_0003s18000	POPTR_0003s18000 (11)//POPTR_0003s18020 (11)	scaffold_3:17223866-17224120(+) (11)//scaffold_3:17245735-17245992(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50170.1	Plant protein of unknown function (DUF247) 	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203472.1.S1_at	A	A1TS	POPTR_0003s18000	POPTR_0003s18000 (11)	scaffold_3:17224115-17224355(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50170.1	Plant protein of unknown function (DUF247) 	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203472.1.S1_s_at	A	A2TS	POPTR_0003s18000	POPTR_0003s18000 (11)//POPTR_0003s18020 (11)	scaffold_3:17224253-17224510(+) (11)//scaffold_3:17246125-17246382(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50170.1	Plant protein of unknown function (DUF247) 	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203473.1.S1_s_at	A	A1TS	POPTR_0003s18010	POPTR_0003s18010 (11)	scaffold_3:17239124-17239366(+) (11)	NA	NA	NA	AT2G36430.1	Plant protein of unknown function (DUF247) 	LOC_Os02g15430.1	conserved hypothetical protein	Medtr5g094690.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203475.1.S1_at	A	A1TS	POPTR_0003s18020	POPTR_0003s18020 (10)	scaffold_3:17246193-17246582(+) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50170.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203476.1.S1_at	A	A1TS	POPTR_0003s18030	POPTR_0003s18030 (10)	scaffold_3:17248471-17248971(-) (10)	NA	Q8W1D5	CBL-interacting serine/threonine-protein kinase 25	AT5G25110.1	CBL-interacting protein kinase 25 	LOC_Os09g25090.1	"CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g016620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203477.1.S1_at	A	A1TS	POPTR_0003s18070	POPTR_0003s18070 (10)	scaffold_3:17279682-17280595(-) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G57970.2	DNA glycosylase superfamily protein 	LOC_Os06g44050.1	"methyladenine glycosylase, putative, expressed"	Medtr8g145370.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.203478.1.S1_s_at	A	A1TS	POPTR_0003s18080	POPTR_0003s18080 (11)	scaffold_3:17284450-17286310(-) (11)	NA	NA	NA	AT1G80860.1	phospholipid N-methyltransferase 	LOC_Os02g39880.1	expressed protein	Medtr4g022020.1	Phospholipid methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203479.1.S1_at	A	A1TS	POPTR_0003s18090	POPTR_0003s18090 (11)	scaffold_3:17293402-17293990(+) (11)	NA	NA	NA	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g55530.1	"HLS, putative, expressed"	Medtr4g022010.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.203480.1.S1_at	A	A1TS	POPTR_0003s18100	POPTR_0003s18100 (11)	scaffold_3:17294996-17296551(-) (11)	NA	Q9SKX0	ABC transporter C family member 13	AT2G07680.1	multidrug resistance-associated protein 11 	LOC_Os06g08560.1	"multidrug resistance-associated protein 11, putative, expressed"	AC233655_22.1	"ABC transporter, transmembrane region, type 1 AC233655.2 135903-147015 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.203481.1.S1_at	A	A1TS	POPTR_0003s18180	POPTR_0003s18180 (11)	scaffold_3:17355749-17355839(-) (11)	NA	Q9S9N4	Magnesium transporter MRS2-1	AT1G16010.3	magnesium transporter 2 	LOC_Os06g44150.1	"CorA-like magnesium transporter protein, putative, expressed"	AC233655_15.1	"Mg2+ transporter protein, CorA-like AC233655.2 106201-110644 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203482.1.S1_at	A	A1TS	POPTR_0003s18200	POPTR_0003s18200 (11)	scaffold_3:17373122-17374807(-) (11)	NA	Q9SZ53	Probable protein phosphatase 2C 60	AT4G31860.1	Protein phosphatase 2C family protein 	LOC_Os06g44210.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203483.1.S1_at	A	A1TS	POPTR_0003s18230	POPTR_0003s18230 (11)	scaffold_3:17399890-17400470(-) (11)	NA	Q9ZUI0	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os09g25540.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr8g144900.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203484.1.S1_at	A	A1TS	POPTR_0003s18250	POPTR_0003s18250 (11)	scaffold_3:17412176-17412328(-) (11)	NA	NA	NA	AT1G63700.1	Protein kinase superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203485.1.S1_at	A	A1TS	POPTR_0003s18260	POPTR_0003s18260 (11)	scaffold_3:17416395-17416942(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G49690.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr2g008370.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203486.1.S1_at	A	A2TS	POPTR_0523s00200	POPTR_0523s00200 (10)//POPTR_0003s18270 (9)	scaffold_3:17418756-17419513(+) (9)//scaffold_523:10087-13347(-) (11)	POPTR_0523s00220 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203487.1.S1_at	A	A1TS	POPTR_0003s18300	POPTR_0003s18300 (9)	scaffold_3:17441187-17441494(+) (9)	NA	NA	NA	AT1G80940.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g55080.1	"snf1-related kinase interactor 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203488.1.S1_at	A	A1TS	POPTR_0003s18340	POPTR_0003s18340 (11)	scaffold_3:17453414-17453802(-) (11)	NA	NA	NA	AT5G25050.1	Major facilitator superfamily protein 	LOC_Os04g42130.1	"integral membrane transporter family protein, putative, expressed"	Medtr1g017050.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203489.1.S1_at	A	A1TS	POPTR_0003s18350	POPTR_0003s18350 (10)	scaffold_3:17459792-17462660(+) (10)	NA	Q94AN4	AP2-like ethylene-responsive transcription factor At1g16060	AT1G16060.1	ARIA-interacting double AP2 domain protein 	LOC_Os09g25600.1	"AP2 domain containing protein, expressed"	Medtr8g144720.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203492.1.S1_at	A	A1TS	POPTR_0112s00210	POPTR_0112s00210 (11)	scaffold_112:26806-27240(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os04g55750.1	OsWAK54 - OsWAK short gene	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203493.1.S1_x_at	A	A1MS	POPTR_0112s00220	POPTR_0112s00220 (11)	scaffold_112:31375-31657(+) (11)	NA	Q9LN59	Putative wall-associated receptor kinase-like 11	AT1G19390.1	Wall-associated kinase family protein 	LOC_Os10g10130.5	"OsWAK112d - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203494.1.S1_x_at	A	A1TS	POPTR_0003s18410	POPTR_0003s18410 (9)	scaffold_3:17501833-17502188(+) (11)//scaffold_3:17541038-17541393(+) (10)	POPTR_0003s18470 (6)	Q9LMT9	Putative wall-associated receptor kinase-like 13	AT1G17910.1	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_3.1	Tyrosine protein kinase AC147501.9 8841-5950 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203495.1.S1_at	A	A2TS	POPTR_0003s22080	POPTR_0003s22080 (11)//POPTR_0003s22070 (9)	scaffold_3:20008569-20008933(+) (9)//scaffold_3:20023505-20023883(+) (11)	NA	Q10976	Putative fatty-acid--CoA ligase fadD26	AT1G20480.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g39780.1	"AMP-binding enzyme family protein, expressed"	Medtr2g118030.1	"Serine/threonine dehydratase, pyridoxal-phosphate-binding site; AMP-dependent synthetase and ligase; Catalase; FAD dependent oxidoreductase; Acyl carrier protein-like; Trimeric LpxA-like "	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016740|transferase activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.203496.1.S1_s_at	A	A1TS	POPTR_0003s22070	POPTR_0003s22070 (11)	scaffold_3:20006846-20007401(+) (11)	POPTR_0003s22080 (6)	Q10976	Putative fatty-acid--CoA ligase fadD26	AT1G20480.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g39780.1	"AMP-binding enzyme family protein, expressed"	Medtr2g118030.1	"Serine/threonine dehydratase, pyridoxal-phosphate-binding site; AMP-dependent synthetase and ligase; Catalase; FAD dependent oxidoreductase; Acyl carrier protein-like; Trimeric LpxA-like "	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016740|transferase activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.203497.1.S1_at	A	A1TS	POPTR_1112s00220	POPTR_1112s00220 (10)	scaffold_1112:412-5904(+) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os11g33394.2	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010460.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203498.1.S1_s_at	A	A1TS	POPTR_0003s22140	POPTR_0003s22140 (11)	scaffold_3:20057644-20058194(+) (11)//scaffold_3:20076208-20076758(+) (10)	NA	NA	NA	AT5G12960.1	Putative glycosyl hydrolase of unknown function (DUF1680) 	LOC_Os02g10190.1	"DUF1680 domain containing protein, putative, expressed"	Medtr4g086820.1	Protein of unknown function DUF1680 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203499.1.S1_s_at	A	A1TS	POPTR_0003s22150	POPTR_0003s22150 (11)	scaffold_108:41871-42702(+) (11)//scaffold_3:20058662-20059491(-) (11)//scaffold_3:20077226-20078057(-) (11)	POPTR_0003s22200 (7)//POPTR_0108s00250 (7)	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203500.1.S1_at	A	A1TS	POPTR_0108s00235	POPTR_0108s00235 (11)	scaffold_108:34352-34513(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203501.1.S1_s_at	A	A3TS	POPTR_0108s00200	POPTR_0108s00210 (11)//POPTR_0108s00200 (11)//POPTR_0108s00220 (10)	scaffold_108:1277-1848(+) (11)//scaffold_108:9526-10097(+) (11)//scaffold_108:18752-19318(+) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT5G11290.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010640.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203502.1.S1_at	A	A1TS	POPTR_0108s00205	POPTR_0108s00205 (11)	scaffold_108:6698-7125(+) (11)//scaffold_108:15924-16351(+) (11)//scaffold_108:62360-62786(+) (11)	NA	NA	NA	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010640.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203507.1.S1_at	A	A1TS	POPTR_0003s22260	POPTR_0003s22260 (11)	scaffold_3:20101050-20101724(-) (11)	NA	NA	NA	AT5G12930.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g31350.1	expressed protein	Medtr2g117870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203508.1.S1_at	A	A1TS	POPTR_0003s22270	POPTR_0003s22270 (11)	scaffold_3:20106487-20107010(-) (11)	NA	NA	NA	AT5G12930.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g31350.1	expressed protein	Medtr2g117870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203509.1.S1_at	A	A1TS	POPTR_0003s22280	POPTR_0003s22280 (11)	scaffold_3:20109845-20110273(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20351.1.S1_at	A	A1TS	POPTR_0016s14940	POPTR_0016s14940 (11)	scaffold_16:14015477-14015634(-) (11)	NA	Q2V419	Cyclin-dependent kinase B1-2	AT2G38620.2	cyclin-dependent kinase B1;2 	LOC_Os01g67160.1	"cyclin-dependent kinase B1-1, putative, expressed"	CU179634_12.1	Tyrosine protein kinase CU179634.6 51496-49795 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.20351.2.S1_a_at	A	A2TS	POPTR_0006s11390	POPTR_0006s11390 (11)//POPTR_0016s14940 (11)	scaffold_16:14015778-14015915(-) (11)//scaffold_6:8624103-8624240(-) (11)	NA	Q2V419	Cyclin-dependent kinase B1-2	AT2G38620.2	cyclin-dependent kinase B1;2 	LOC_Os01g67160.1	"cyclin-dependent kinase B1-1, putative, expressed"	CU179634_12.1	Tyrosine protein kinase CU179634.6 51496-49795 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.20351.2.S1_at	A	A1TS	POPTR_0006s11390	POPTR_0006s11390 (9)	scaffold_6:8623961-8624459(-) (9)	NA	Q2V419	Cyclin-dependent kinase B1-2	AT2G38620.2	cyclin-dependent kinase B1;2 	LOC_Os01g67160.1	"cyclin-dependent kinase B1-1, putative, expressed"	CU179634_12.1	Tyrosine protein kinase CU179634.6 51496-49795 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.20351.3.A1_at	A	A1TS	POPTR_0006s11390	POPTR_0006s11390 (11)	scaffold_6:8622564-8623553(-) (11)	NA	Q2V419	Cyclin-dependent kinase B1-2	AT2G38620.2	cyclin-dependent kinase B1;2 	LOC_Os01g67160.1	"cyclin-dependent kinase B1-1, putative, expressed"	CU179634_12.1	Tyrosine protein kinase CU179634.6 51496-49795 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203510.1.S1_at	A	A1TS	POPTR_0003s22290	POPTR_0003s22290 (11)	scaffold_3:20112525-20113605(-) (11)	NA	Q9C690	Transcription factor bHLH122	AT1G51140.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g117830.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.203511.1.S1_s_at	A	A3TS	POPTR_0003s20550	POPTR_0003s22320 (11)//POPTR_0003s20560 (11)//POPTR_0003s20550 (11)	scaffold_3:19050115-19050366(-) (11)//scaffold_3:19064919-19065170(-) (11)//scaffold_3:20146507-20146758(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203512.1.S1_at	A	A1TS	POPTR_0003s20550	POPTR_0003s20550 (11)	scaffold_3:19050518-19050555(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203513.1.S1_at	A	A1TS	POPTR_0003s22340	POPTR_0003s22340 (11)	scaffold_3:20175125-20175596(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203515.1.S1_at	A	A1TS	POPTR_0003s22370	POPTR_0003s22370 (11)	scaffold_3:20194687-20195283(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010560.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203516.1.S1_at	A	A1TS	POPTR_0003s20520	POPTR_0003s20520 (11)	scaffold_3:19008280-19008476(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT5G11290.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010560.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203517.1.S1_s_at	A	A2TS	POPTR_0003s20510	POPTR_0003s22400 (11)//POPTR_0003s20510 (11)	scaffold_3:19001561-19002075(-) (11)//scaffold_3:20200573-20209499(+) (11)	POPTR_0003s22380 (7)	Q9SD53	UPF0481 protein At3g47200	AT5G11290.1	Plant protein of unknown function (DUF247) 	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010560.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203518.1.S1_s_at	A	A1TS	POPTR_0003s20490	POPTR_0003s20490 (9)	scaffold_3:18982797-18983363(+) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G02645.1	Plant protein of unknown function (DUF247) 	LOC_Os06g08120.1	"plant protein of unknown function domain containing protein, expressed"	Medtr4g005960.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203519.1.S1_at	A	A1TS	POPTR_0003s20470	POPTR_0003s20470 (11)	scaffold_3:18951378-18951877(-) (11)	NA	Q5YGP7	AP2-like ethylene-responsive transcription factor PLT2	AT1G51190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g40070.1	"AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed"	Medtr4g087240.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203520.1.S1_s_at	A	A1TS	POPTR_0003s20460	POPTR_0003s20460 (11)	scaffold_3:18948157-18948428(-) (11)	NA	NA	NA	AT4G40000.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203521.1.S1_at	A	A1TS	POPTR_0003s20410	POPTR_0003s20410 (11)	scaffold_3:18921558-18924546(-) (11)	NA	Q940Q3	Zinc transporter ZTP29	AT3G20870.1	ZIP metal ion transporter family 	LOC_Os02g10230.1	"metal cation transporter, putative, expressed"	Medtr4g087400.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.203522.1.S1_at	A	A1TS	POPTR_0003s20380	POPTR_0003s20380 (11)	scaffold_3:18882871-18883748(-) (11)	NA	Q9SH30	Putative copper-transporting ATPase 3	AT1G63440.1	heavy metal atpase 5 	LOC_Os02g10290.1	"copper-transporting ATPase, putative, expressed"	Medtr8g012740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.203523.1.S1_at	A	A1TS	POPTR_0003s20370	POPTR_0003s20370 (11)	scaffold_3:18880146-18880523(-) (11)	NA	NA	NA	AT1G76870.1	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). 	LOC_Os12g06640.2	"homeodomain, putative, expressed"	Medtr2g117610.1	"Homeodomain-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203524.1.S1_at	A	A1TS	POPTR_0003s20350	POPTR_0003s20350 (10)	scaffold_3:18866895-18869318(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr4g087360.1	"Zinc finger, RING-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203525.1.S1_at	A	A1TS	POPTR_0003s20310	POPTR_0003s20310 (11)	scaffold_3:18821598-18821804(-) (11)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr4g118330.1	RNA-binding region RNP-1 (RNA recognition motif); U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.203526.1.S1_at	A	A1TS	POPTR_0003s20300	POPTR_0003s20300 (10)	scaffold_3:18809591-18809913(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203527.1.S1_at	A	A1TS	POPTR_0003s20280	POPTR_0003s20280 (11)	scaffold_3:18805781-18806258(+) (11)	NA	O22218	"Calcium-transporting ATPase 4, plasma membrane-type"	AT2G41560.1	"autoinhibited Ca(2+)-ATPase, isoform 4 "	LOC_Os12g04220.1	"calcium-transporting ATPase, plasma membrane-type, putative"	Medtr4g118290.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.203528.1.S1_at	A	A1TS	POPTR_0003s20240	POPTR_0003s20240 (11)	scaffold_3:18780628-18781316(+) (11)	NA	O22213	Cytokinin dehydrogenase 1	AT3G63440.1	cytokinin oxidase/dehydrogenase 6 	LOC_Os05g31040.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr4g118430.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
PtpAffx.203529.1.S1_at	A	A1TS	POPTR_0003s20230	POPTR_0003s20230 (11)	scaffold_3:18767153-18767638(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203530.1.S1_at	A	A1TS	POPTR_0003s20220	POPTR_0003s20220 (11)	scaffold_3:18762157-18762976(-) (11)	NA	Q9FXJ1	GDSL esterase/lipase At1g28570	AT1G28570.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g31940.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019090.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.203531.1.S1_at	A	A1MS	POPTR_0003s20210	POPTR_0003s20210 (10)	scaffold_3:18759662-18760551(-) (10)	NA	NA	NA	AT4G31560.1	high chlorophyll fluorescence 153 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203532.1.S1_at	A	A1TS	POPTR_0003s20190	POPTR_0003s20190 (11)	scaffold_3:18755933-18756438(+) (11)	NA	Q9SVH3	Pentatricopeptide repeat-containing protein At4g20740	AT4G20740.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g08180.2	"PPR repeat containing protein, expressed"	Medtr3g026200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203533.1.S1_at	A	A1TS	POPTR_0003s20180	POPTR_0003s20180 (11)	scaffold_3:18751337-18751769(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203533.1.S1_s_at	A	A1TS	POPTR_0003s20180	POPTR_0003s20180 (11)	scaffold_3:18751612-18751917(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203534.1.S1_at	A	A1TS	POPTR_0003s20160	POPTR_0003s20160 (11)	scaffold_3:18734002-18734465(-) (11)	NA	Q9FPS3	Ubiquitin carboxyl-terminal hydrolase 24	AT4G30890.3	ubiquitin-specific protease 24 	LOC_Os07g46660.2	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr2g071010.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.203535.1.S1_at	A	A1TS	POPTR_0003s20150	POPTR_0003s20150 (11)	scaffold_3:18727315-18727543(+) (11)	NA	P90648	Myosin heavy chain kinase B	AT3G51930.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g71780.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g071030.1	Myristoyl-CoA:protein N-myristoyltransferase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203536.1.S1_at	A	A2TS	POPTR_0003s20120	POPTR_0003s20120 (11)//POPTR_1155s00200 (9)	scaffold_1155:34-1082(+) (9)//scaffold_3:18707031-18709917(-) (11)	NA	Q6BJ48	Crossover junction endonuclease MUS81	AT4G30870.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os01g71960.1	"endonuclease, putative, expressed"	Medtr3g025880.1	"endonuclease, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0005515|protein binding||GO:0004518|nuclease activity||GO:0003677|DNA binding	NA
PtpAffx.203537.1.S1_at	A	A2TS	POPTR_0003s20110	POPTR_1155s00205 (11)//POPTR_0003s20110 (11)	scaffold_1155:6239-7457(-) (11)//scaffold_3:18703762-18704976(+) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os01g58640.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr4g045140.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.203538.1.S1_s_at	A	A1TS	POPTR_0003s20090	POPTR_0003s20090 (11)	scaffold_3:18684548-18685017(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g043920.1	"Peptidase aspartic, active site; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.203539.1.S1_at	A	A1TS	POPTR_0003s20070	POPTR_0003s20070 (11)	scaffold_3:18673077-18673782(+) (11)	NA	NA	NA	AT1G29050.1	TRICHOME BIREFRINGENCE-LIKE 38 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g021900.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203540.1.S1_at	A	A2TS	POPTR_0003s20060	POPTR_0003s20060 (11)//POPTR_1908s00200 (11)	scaffold_1908:1910-2540(-) (11)//scaffold_3:18665421-18666051(+) (11)	NA	NA	NA	AT1G29050.1	TRICHOME BIREFRINGENCE-LIKE 38 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g021900.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203541.1.S1_at	A	A1TS	POPTR_0003s20030	POPTR_0003s20030 (11)	scaffold_3:18648644-18649024(-) (11)	NA	NA	NA	AT2G06090.1	Plant self-incompatibility protein S1 family 	NA	NA	Medtr4g144120.1	Plant self-incompatibility S1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203542.1.S1_at	A	A1TS	POPTR_0003s20020	POPTR_0003s20020 (11)	scaffold_3:18636300-18636515(-) (11)	NA	O60306	Intron-binding protein aquarius	AT2G38770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g26960.1	"intron-binding protein aquarius, putative, expressed"	Medtr1g046610.1	"Intron-binding protein aquarius, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203542.1.S1_s_at	A	A1TS	POPTR_0003s20020	POPTR_0003s20020 (11)	scaffold_3:18636503-18637819(-) (11)	NA	O60306	Intron-binding protein aquarius	AT2G38770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g26960.1	"intron-binding protein aquarius, putative, expressed"	Medtr1g046610.1	"Intron-binding protein aquarius, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203543.1.S1_at	A	A1TS	POPTR_0003s20000	POPTR_0003s20000 (11)	scaffold_3:18631072-18631625(+) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr3g020860.1	"Glutamine synthetase, beta-Grasp "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203544.1.S1_at	A	A1TS	POPTR_0003s19990	POPTR_0003s19990 (11)	scaffold_3:18620994-18622244(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT3G54510.2	Early-responsive to dehydration stress protein (ERD4) 	LOC_Os01g72210.1	"early-responsive to dehydration protein-related, putative, expressed"	Medtr3g020590.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.203545.1.S1_at	A	A1TS	POPTR_0003s19970	POPTR_0003s19970 (11)	scaffold_3:18611767-18612720(+) (11)	NA	P51074	Annexin-like protein RJ4	AT5G12380.1	annexin 8 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr3g020370.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.203546.1.S1_at	A	A1TS	POPTR_0003s19960	POPTR_0003s19960 (11)	scaffold_3:18601509-18604112(-) (11)	NA	NA	NA	AT3G54500.1	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g31360.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203547.1.S1_at	A	A1TS	POPTR_0003s19840	POPTR_0003s19840 (10)	scaffold_3:18459875-18460367(+) (10)	NA	NA	NA	AT3G14180.1	sequence-specific DNA binding transcription factors 	LOC_Os04g36790.1	"transcription factor like protein, putative, expressed"	Medtr8g025830.1	"6b-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203548.1.S1_at	A	A1TS	POPTR_0003s19780	POPTR_0003s19780 (11)	scaffold_3:18420172-18420352(-) (11)	NA	NA	NA	AT2G11890.1	adenylate cyclases 	LOC_Os08g20400.1	"adenylate cyclase family protein, expressed"	Medtr8g122220.1	Adenylate cyclase 	GO:0044281|small molecule metabolic process||GO:0006171|cAMP biosynthetic process	GO:0004016|adenylate cyclase activity	NA
PtpAffx.203549.1.S1_at	A	A1TS	POPTR_0003s19770	POPTR_0003s19770 (10)	scaffold_3:18418192-18418666(+) (10)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G13810.1	Glutaredoxin family protein 	LOC_Os03g24030.1	"glutaredoxin, putative, expressed"	Medtr8g039690.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.203550.1.S1_at	A	A1TS	POPTR_0003s19750	POPTR_0003s19750 (11)	scaffold_3:18407573-18407609(-) (11)	NA	Q6NLV4	Flowering time control protein FY	AT5G13480.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g72220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g039570.1	"WD repeat-containing protein 33, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203551.1.S1_at	A	A1TS	POPTR_0003s19730	POPTR_0003s19730 (11)	scaffold_3:18391444-18392254(-) (11)	NA	Q9M1I1	F-box protein At3g54460	AT3G54460.1	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein 	LOC_Os01g72310.1	"OsFBO7 - F-box and other domain containing protein, expressed"	Medtr3g020010.1	"SNF2-related; Cyclin-like F-box; Zinc finger, CW-type "	NA	GO:0008270|zinc ion binding||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.203552.1.S1_at	A	A1TS	POPTR_0003s19720	POPTR_0003s19720 (11)	scaffold_3:18388504-18389316(+) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G19420.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os05g31920.2	"FYVE zinc finger domain containing protein, expressed"	Medtr5g096940.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203553.1.S1_at	A	A1TS	POPTR_0003s19650	POPTR_0003s19650 (11)	scaffold_3:18325641-18326348(+) (11)//scaffold_3:18335754-18336440(+) (10)	NA	Q9LK64	ABC transporter C family member 3	AT3G13080.4	multidrug resistance-associated protein 3 	LOC_Os01g07870.1	"ABC transporter family protein, putative, expressed"	Medtr5g034390.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.203554.1.S1_at	A	A1TS	POPTR_0003s19630	POPTR_0003s19630 (11)	scaffold_3:18307310-18307923(-) (11)	NA	P36594	DNA-directed RNA polymerase II subunit rpb1	AT2G40030.1	nuclear RNA polymerase D1B 	LOC_Os02g05880.1	"RNA polymerase Rpb1, domain 2 family protein, expressed"	Medtr8g042720.1	"Cell surface antigen; DNA-directed RNA polymerase, subunit A "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.203555.1.S1_at	A	A1TS	POPTR_0003s19630	POPTR_0003s19630 (11)	scaffold_3:18298493-18300349(-) (11)	NA	P36594	DNA-directed RNA polymerase II subunit rpb1	AT2G40030.1	nuclear RNA polymerase D1B 	LOC_Os02g05880.1	"RNA polymerase Rpb1, domain 2 family protein, expressed"	Medtr8g042720.1	"Cell surface antigen; DNA-directed RNA polymerase, subunit A "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.203556.1.S1_at	A	A1TS	POPTR_0003s19620	POPTR_0003s19620 (11)	scaffold_3:18291535-18292086(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os01g41770.1	"leucine rich repeat protein, putative, expressed"	AC225530_8.1	"Leucine-rich repeat, typical subtype AC225530.6 109574-106712 E EGN_Mt090430 200"	NA	GO:0005515|protein binding	NA
PtpAffx.203557.1.S1_at	A	A1TS	POPTR_0003s19610	POPTR_0003s19610 (11)	scaffold_3:18289981-18290665(+) (11)	NA	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.203558.1.S1_at	A	A1TS	POPTR_0003s19540	POPTR_0003s19540 (11)	scaffold_3:18240090-18240593(+) (11)	NA	Q9SFB8	Phosphatidylinositol-4-phosphate 5-kinase 6	AT3G07960.1	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os07g46490.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr1g068490.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.203559.1.S1_at	A	A1TS	POPTR_0003s19530	POPTR_0003s19530 (11)	scaffold_3:18227187-18228755(+) (11)	NA	Q9LK88	NADPH:quinone oxidoreductase	AT3G27890.1	NADPH:quinone oxidoreductase 	LOC_Os01g72430.1	"NADPH quinone oxidoreductase, putative, expressed"	Medtr8g042840.1	NADPH-dependent FMN reductase 	NA	GO:0050662|coenzyme binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.203560.1.S1_at	A	A1TS	POPTR_0003s19520	POPTR_0003s19520 (11)	scaffold_3:18223978-18225005(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203561.1.S1_at	A	A1TS	POPTR_0003s19510	POPTR_0003s19510 (11)	scaffold_3:18221118-18221293(+) (11)	NA	Q9LK88	NADPH:quinone oxidoreductase	AT3G27890.1	NADPH:quinone oxidoreductase 	LOC_Os01g72430.1	"NADPH quinone oxidoreductase, putative, expressed"	Medtr8g042840.1	NADPH-dependent FMN reductase 	NA	GO:0050662|coenzyme binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.203562.1.S1_at	A	A1MS	POPTR_0003s19425	POPTR_0003s19425 (10)	scaffold_3:18157892-18158052(+) (10)	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT5G13530.2	protein kinases;ubiquitin-protein ligases 	LOC_Os05g32570.1	"RING E3 ligase protein, putative, expressed"	Medtr3g005710.1	"KEG ; protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203563.1.S1_at	A	A1MS	POPTR_0003s19380	POPTR_0003s19380 (11)	scaffold_3:18125068-18125687(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203564.1.S1_at	A	A1TS	POPTR_0003s19350	POPTR_0003s19350 (11)	scaffold_3:18109039-18109388(-) (11)	NA	Q9SAK8	Cation/H(+) antiporter 2	AT1G79400.1	cation/H+ exchanger 2 	LOC_Os02g58660.1	"ATCHX15, putative, expressed"	Medtr3g127930.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.203565.1.S1_at	A	A1MS	POPTR_0003s19360	POPTR_0003s19360 (10)	scaffold_3:18108783-18114207(-) (10)	NA	Q9SAK8	Cation/H(+) antiporter 2	AT1G79400.1	cation/H+ exchanger 2 	LOC_Os02g58660.1	"ATCHX15, putative, expressed"	Medtr3g127930.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.203566.1.S1_at	A	A1TS	POPTR_0003s19330	POPTR_0003s19330 (11)	scaffold_3:18095348-18095576(+) (11)	NA	Q8BTU1	UPF0468 protein C16orf80 homolog	AT3G12300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). 	LOC_Os09g33570.1	"AGAP009680-PA, putative, expressed"	Medtr8g044000.2	Protein of unknown function DUF667 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203567.1.S1_at	A	A1TS	POPTR_0003s19310	POPTR_0003s19310 (11)	scaffold_3:18080385-18080812(-) (11)	NA	NA	NA	AT5G06990.1	"Protein of unknown function, DUF617 "	LOC_Os01g59200.1	"DUF617 domain containing protein, expressed"	Medtr8g044040.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203568.1.S1_at	A	A1TS	POPTR_0003s19240	POPTR_0003s19240 (10)	scaffold_3:18032515-18035209(+) (10)	NA	NA	NA	NA	NA	LOC_Os03g59650.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr3g005060.1	BRCT 	NA	NA	GO:0005622|intracellular
PtpAffx.203571.1.S1_at	A	A1TS	POPTR_0003s19160	POPTR_0003s19160 (11)	scaffold_3:17961646-17963481(+) (11)	NA	Q9ZVJ3	65-kDa microtubule-associated protein 5	AT2G38720.1	microtubule-associated protein 65-5 	LOC_Os05g33890.1	"microtubule associated protein, putative, expressed"	Medtr8g044460.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203573.1.S1_at	A	A1TS	POPTR_0003s19140	POPTR_0003s19140 (11)	scaffold_3:17934368-17934427(-) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.203574.1.S1_s_at	A	A1TS	POPTR_0003s19120	POPTR_0003s19120 (9)	scaffold_3:17924238-17924813(-) (10)	NA	Q42485	Zinc finger protein 1	AT1G80730.1	zinc-finger protein 1 	LOC_Os08g44190.1	"ZOS8-13 - C2H2 zinc finger protein, expressed"	Medtr7g022900.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.203575.1.S1_s_at	A	A2TS	POPTR_0003s19090	POPTR_0003s19090 (11)//POPTR_0003s19110 (10)	scaffold_3:17916870-17917261(-) (11)//scaffold_3:17921643-17922020(-) (10)	NA	O23659	B3 domain-containing protein At2g33720	AT2G33720.1	AP2/B3-like transcriptional factor family protein 	NA	NA	Medtr2g073930.1	transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.203576.1.S1_at	A	A1TS	POPTR_0003s19070	POPTR_0003s19070 (11)	scaffold_3:17909571-17910127(+) (11)	NA	Q9SWH5	Galactoside 2-alpha-L-fucosyltransferase	AT2G03220.1	fucosyltransferase 1 	LOC_Os02g52630.1	"xyloglucan fucosyltransferase, putative, expressed"	Medtr1g112160.1	Xyloglucan fucosyltransferase 	GO:0071554|cell wall organization or biogenesis||GO:0042546|cell wall biogenesis	GO:0008107|galactoside 2-alpha-L-fucosyltransferase activity	GO:0016020|membrane
PtpAffx.203577.1.S1_at	A	A1TS	POPTR_0003s19060	POPTR_0003s19060 (11)	scaffold_3:17902104-17902534(+) (11)	NA	Q9SWH5	Galactoside 2-alpha-L-fucosyltransferase	AT2G03220.1	fucosyltransferase 1 	LOC_Os02g52630.1	"xyloglucan fucosyltransferase, putative, expressed"	Medtr1g112160.1	Xyloglucan fucosyltransferase 	GO:0071554|cell wall organization or biogenesis||GO:0042546|cell wall biogenesis	GO:0008107|galactoside 2-alpha-L-fucosyltransferase activity	GO:0016020|membrane
PtpAffx.203578.1.S1_at	A	A1TS	POPTR_0003s19030	POPTR_0003s19030 (9)	scaffold_3:17887652-17888190(+) (9)	NA	Q9SWH5	Galactoside 2-alpha-L-fucosyltransferase	AT2G03220.1	fucosyltransferase 1 	LOC_Os02g52630.1	"xyloglucan fucosyltransferase, putative, expressed"	Medtr1g112160.1	Xyloglucan fucosyltransferase 	GO:0071554|cell wall organization or biogenesis||GO:0042546|cell wall biogenesis	GO:0008107|galactoside 2-alpha-L-fucosyltransferase activity	GO:0016020|membrane
PtpAffx.203579.1.S1_at	A	A1TS	POPTR_0003s19010	POPTR_0003s19010 (11)	scaffold_3:17870933-17871459(-) (11)	NA	Q3E6Q1	Pentatricopeptide repeat-containing protein At1g11290	AT1G11290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g02200.1	"pentatricopeptide, putative, expressed"	Medtr4g129330.1	Protein of unknown function DUF177 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203580.1.S1_at	A	A1TS	POPTR_0003s18980	POPTR_0003s18980 (11)	scaffold_3:17852603-17853133(+) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr8g139010.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203582.1.S1_at	A	A1TS	POPTR_0003s18950	POPTR_0003s18950 (11)	scaffold_3:17837421-17837910(-) (11)	NA	Q6Z8C8	Cyclin-dependent kinase F-4	AT4G19110.1	Protein kinase superfamily protein 	LOC_Os06g02550.2	"CPuORF21 - conserved peptide uORF-containing transcript, expressed"	Medtr5g027190.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203583.1.S1_at	A	A1TS	POPTR_0003s18940	POPTR_0003s18940 (11)	scaffold_3:17830276-17833071(+) (11)	NA	NA	NA	AT2G38695.1	unknown protein; Has 65 Blast hits to 65 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os09g27070.1	"E2F-related protein, putative, expressed"	AC233661_12.1	"transcription factor, putative AC233661.2 70814-64742 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203584.1.S1_at	A	A1TS	POPTR_0003s18930	POPTR_0003s18930 (11)	scaffold_3:17825298-17825838(-) (11)	NA	Q7TQ20	DnaJ homolog subfamily C member 2	AT3G11450.1	DnaJ domain ;Myb-like DNA-binding domain 	LOC_Os04g30890.1	"MYB family transcription factor, putative, expressed"	Medtr7g132840.1	"Heat shock protein DnaJ, N-terminal; Homeodomain-related; "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.203585.1.S1_at	A	A1TS	POPTR_0003s18900	POPTR_0003s18900 (11)	scaffold_3:17811901-17812307(+) (11)	NA	A2WW87	Transcription factor GAMYB	AT5G06100.3	myb domain protein 33 	LOC_Os01g59660.2	"MYB family transcription factor, putative, expressed"	Medtr3g068960.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203586.1.S1_at	A	A1TS	POPTR_0003s18880	POPTR_0003s18880 (11)	scaffold_3:17777085-17781782(-) (11)	NA	Q5ZLT0	Exportin-7	AT5G06120.2	ARM repeat superfamily protein 	LOC_Os03g42050.1	"exportin-7-A, putative, expressed"	Medtr3g163590.1	"Exportin-7-B, related "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.203587.1.S1_at	A	A1TS	POPTR_0003s18830	POPTR_0003s18830 (11)	scaffold_3:17756171-17756878(-) (11)	NA	O65351	Subtilisin-like protease	AT1G20160.2	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30458.1	"subtilisin-like protease, putative, expressed"	Medtr3g139400.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.203588.1.S1_at	A	A1TS	POPTR_0003s18730	POPTR_0003s18730 (11)	scaffold_3:17699760-17700264(+) (11)	NA	NA	NA	AT1G48560.1	unknown protein; Has 75 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	Medtr3g016160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203589.1.S1_at	A	A2TS	POPTR_2331s00010	POPTR_2331s00010 (11)//POPTR_0003s18655 (10)	scaffold_2331:299-3337(+) (11)//scaffold_3:17652401-17656561(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr3g151680.1	"Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203591.1.S1_at	A	A1TS	POPTR_0003s18600	POPTR_0003s18600 (11)	scaffold_3:17616449-17621374(+) (11)	NA	P13254	Methionine gamma-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.203591.1.S1_s_at	A	A2TS	POPTR_0003s18590	POPTR_0003s18590 (11)//POPTR_0003s18600 (11)	scaffold_3:17616252-17616684(+) (11)//scaffold_3:17621143-17621575(+) (11)	NA	P13254	Methionine gamma-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.203593.1.S1_at	A	A1MS	POPTR_0003s18550	POPTR_0003s18550 (11)	scaffold_3:17597628-17597791(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT1G79640.2	Protein kinase superfamily protein 	LOC_Os02g54900.1	"STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g023360.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203593.1.S1_x_at	A	A1MS	POPTR_0003s18550	POPTR_0003s18550 (11)	scaffold_3:17597573-17597791(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT1G79640.2	Protein kinase superfamily protein 	LOC_Os02g54900.1	"STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g023360.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203594.1.S1_at	A	A1TS	POPTR_0003s18510	POPTR_0003s18510 (11)	scaffold_3:17568716-17569166(-) (11)	NA	Q9FMS6	Probable CCR4-associated factor 1 homolog 11	AT5G22250.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr4g149570.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.203595.1.S1_x_at	A	A1TS	POPTR_0003s18500	POPTR_0003s18500 (11)	scaffold_3:17565506-17565829(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.203596.1.S1_at	A	A1TS	POPTR_0003s18490	POPTR_0003s18490 (11)	scaffold_3:17555759-17556249(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.203597.1.S1_at	A	A1MS	POPTR_0003s18480	POPTR_0003s18480 (11)	scaffold_3:17545781-17545966(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os02g56370.1	"OsWAK20 - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203597.1.S1_s_at	A	A6TS	POPTR_0003s18440	POPTR_0003s18480 (11)//POPTR_0075s00200 (11)//POPTR_0112s00230 (11)//POPTR_0003s18440 (11)//POPTR_0075s00210 (11)//POPTR_0112s00200 (11)	scaffold_112:5868-6360(+) (11)//scaffold_112:44922-45414(+) (11)//scaffold_3:17519940-17520432(+) (11)//scaffold_3:17545752-17546244(+) (11)//scaffold_75:29649-30141(+) (11)//scaffold_75:45497-45989(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.203598.1.S1_x_at	A	A3TS	POPTR_0003s18410	POPTR_0004s20370 (10)//POPTR_0103s00200 (10)//POPTR_0003s18410 (10)	scaffold_103:27463-27551(-) (10)//scaffold_3:17501442-17501530(+) (10)//scaffold_4:19952122-19952210(-) (10)	NA	Q9LMT9	Putative wall-associated receptor kinase-like 13	AT1G17910.1	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_3.1	Tyrosine protein kinase AC147501.9 8841-5950 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203599.1.S1_x_at	A	A1TS	POPTR_0075s00220	POPTR_0075s00220 (11)	scaffold_75:49463-50000(+) (11)	POPTR_0112s00220 (8)//POPTR_0003s18500 (7)	Q9S9M5	Wall-associated receptor kinase-like 1	AT1G16120.1	wall associated kinase-like 1 	LOC_Os04g24220.3	"OsWAK32 - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.2036.1.S1_at	A	A1TS	POPTR_0015s15420	POPTR_0015s15420 (9)	scaffold_15:14710934-14711173(+) (9)	NA	Q71N54	Lecithine-cholesterol acyltransferase-like 4	AT4G19860.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os04g52500.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr4g114600.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
PtpAffx.203602.1.S1_s_at	A	A1TS	POPTR_0003s18380	POPTR_0003s18380 (9)	scaffold_3:17483565-17485070(-) (11)	NA	Q8L831	Nudix hydrolase 3	AT1G79690.1	nudix hydrolase homolog 3 	LOC_Os02g55030.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.203603.1.S1_at	A	A1TS	POPTR_0003s20670	POPTR_0003s20670 (11)	scaffold_3:19150466-19151130(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G55570.1	SKU5  similar 12 	LOC_Os05g40740.3	"monocopper oxidase, putative, expressed"	Medtr4g115270.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.203604.1.S1_at	A	A1TS	POPTR_0003s20680	POPTR_0003s20680 (11)	scaffold_3:19161410-19162087(+) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G55570.1	SKU5  similar 12 	LOC_Os05g40740.3	"monocopper oxidase, putative, expressed"	Medtr4g115270.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.203605.1.S1_at	A	A1TS	POPTR_0003s20710	POPTR_0003s20710 (10)	scaffold_3:19169770-19170217(+) (10)	NA	Q9FMA1	Pentatricopeptide repeat-containing protein At5g56310	AT5G56310.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g15530.1	"tetratricopeptide-like helical, putative, expressed"	Medtr1g047310.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203606.1.S1_at	A	A1TS	POPTR_0003s20720	POPTR_0003s20720 (11)	scaffold_3:19171676-19172117(-) (11)	NA	O81635	Kinesin-4	AT1G55550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g15540.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.203607.1.S1_at	A	A1TS	POPTR_0003s20730	POPTR_0003s20730 (11)	scaffold_3:19180467-19181113(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203608.1.S1_at	A	A1TS	POPTR_0003s20750	POPTR_0003s20750 (11)	scaffold_3:19191922-19192570(+) (11)	NA	Q9C554	Expansin-A1	AT1G69530.2	expansin A1 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203609.1.S1_at	A	A1TS	POPTR_0003s20760	POPTR_0003s20760 (11)	scaffold_3:19200872-19201144(+) (11)	NA	P35658	Nuclear pore complex protein Nup214	AT1G55540.2	Nuclear pore complex protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203610.1.S1_at	A	A1TS	POPTR_0003s20770	POPTR_0003s20770 (11)	scaffold_3:19206920-19208136(+) (11)	NA	NA	NA	AT1G55535.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g12220.1	conserved hypothetical protein	Medtr4g115220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203611.1.S1_at	A	A1TS	POPTR_0003s20800	POPTR_0003s20800 (11)	scaffold_3:19213885-19214440(-) (11)	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT5G56350.1	Pyruvate kinase family protein 	LOC_Os01g16960.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.203612.1.S1_at	A	A1TS	POPTR_0003s20810	POPTR_0003s20810 (11)	scaffold_3:19217731-19219618(-) (11)	NA	O08795	Glucosidase 2 subunit beta	AT5G56360.1	calmodulin-binding protein 	LOC_Os01g16970.1	"glucosidase II beta subunit-like domain containing protein, expressed"	Medtr4g115150.1	Glucosidase II beta subunit-like 	NA	GO:0005515|protein binding	NA
PtpAffx.203613.1.S1_at	A	A1TS	POPTR_0003s20850	POPTR_0003s20850 (9)	scaffold_3:19244787-19245260(+) (9)	NA	Q9FM85	Probable receptor-like protein kinase At5g56460	AT5G56460.1	Protein kinase superfamily protein 	LOC_Os03g06330.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr4g136940.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203614.1.S1_at	A	A1TS	POPTR_0003s20880	POPTR_0003s20880 (11)	scaffold_3:19267614-19268629(+) (11)	NA	Q9LVC3	Pumilio homolog 12	AT5G56510.1	pumilio 12 	LOC_Os11g37090.1	"pumilio-family RNA binding repeat domain containing protein, expressed"	Medtr5g072550.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.203615.1.S1_at	A	A1TS	POPTR_0003s20900	POPTR_0003s20900 (11)	scaffold_3:19273483-19274538(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203616.1.S1_at	A	A1TS	POPTR_0003s20910	POPTR_0003s20910 (11)	scaffold_3:19275630-19275820(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203617.1.S1_at	A	A1TS	POPTR_0003s20930	POPTR_0003s20930 (11)	scaffold_3:19277920-19278439(-) (11)	NA	NA	NA	AT3G13480.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203618.1.S1_at	A	A1TS	POPTR_0003s20970	POPTR_0003s20970 (11)	scaffold_3:19298308-19298524(+) (11)	NA	P74003	Protein methyltransferase hemK homolog	AT5G64150.1	RNA methyltransferase family protein 	LOC_Os12g41830.1	"Methyltransferase small domain containing protein, expressed"	AC235488_33.1	Modification methylase HemK; Methyltransferase small AC235488.1 154102-150229 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203619.1.S1_at	A	A1TS	POPTR_0003s20990	POPTR_0003s20990 (11)	scaffold_3:19322494-19323010(+) (11)	NA	P27398	Calpain-D	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
PtpAffx.203620.1.S1_at	A	A1TS	POPTR_0003s20990	POPTR_0003s20990 (11)	scaffold_3:19326369-19326691(+) (11)	NA	P27398	Calpain-D	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
PtpAffx.203621.1.S1_at	A	A1TS	POPTR_0003s21040	POPTR_0003s21040 (11)	scaffold_3:19353112-19354843(-) (11)	NA	NA	NA	AT1G55325.2	RNA polymerase II transcription mediators 	LOC_Os05g37500.1	expressed protein	Medtr3g105710.1	Rhodopsin-like GPCR superfamily; TRAP240 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203622.1.S1_at	A	A1TS	POPTR_0003s21050	POPTR_0003s21050 (11)	scaffold_3:19359274-19359628(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203623.1.S1_at	A	A1TS	POPTR_0003s21060	POPTR_0003s21060 (10)	scaffold_3:19361846-19362314(+) (10)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr3g076800.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.203624.1.S1_at	A	A1TS	POPTR_0003s21060	POPTR_0003s21060 (9)	scaffold_3:19362817-19363346(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr3g076800.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.203625.1.S1_at	A	A1TS	POPTR_0003s21090	POPTR_0003s21090 (11)	scaffold_3:19382983-19383546(-) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os07g10410.1	AP2 domain containing protein	Medtr7g102550.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203626.1.S1_at	A	A1TS	POPTR_0003s21100	POPTR_0003s21100 (11)	scaffold_3:19384749-19385946(-) (11)	NA	Q8BKC5	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os07g38760.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.203626.1.S1_s_at	A	A1TS	POPTR_0003s21100	POPTR_0003s21100 (11)	scaffold_3:19384802-19385319(-) (11)	NA	Q8BKC5	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os07g38760.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.203627.1.S1_at	A	A1TS	POPTR_0003s21110	POPTR_0003s21110 (10)	scaffold_3:19395414-19396165(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.203628.1.S1_at	A	A3TS	POPTR_0003s21150	POPTR_0003s21150 (11)//POPTR_0906s00210 (11)//POPTR_1851s00200 (10)	scaffold_1851:1352-2060(-) (10)//scaffold_3:19420706-19421452(+) (11)//scaffold_906:22-5300(+) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.203629.1.S1_at	A	A1TS	POPTR_0003s21160	POPTR_0003s21160 (11)	scaffold_3:19434326-19436925(+) (11)	NA	Q84MC2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8	AT5G11950.2	Putative lysine decarboxylase family protein 	LOC_Os01g51210.1	"uncharacterized protein PA4923, putative, expressed"	Medtr1g019920.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203630.1.S1_at	A	A1MS	POPTR_0003s21170	POPTR_0003s21170 (11)	scaffold_3:19438146-19438584(-) (11)	NA	NA	NA	AT4G08810.1	calcium ion binding 	LOC_Os07g43990.1	expressed protein	Medtr4g134130.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203631.1.S1_at	A	A1TS	POPTR_0003s21210	POPTR_0003s21210 (11)	scaffold_3:19453487-19454155(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59100.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity"	NA
PtpAffx.203632.1.S1_at	A	A1TS	POPTR_0003s21220	POPTR_0003s21220 (11)	scaffold_3:19458802-19459837(-) (11)	NA	NA	NA	AT3G13600.1	calmodulin-binding family protein 	LOC_Os10g27170.1	"calmodulin-binding protein, putative, expressed"	Medtr4g134270.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203633.1.S1_at	A	A1TS	POPTR_0003s21230	POPTR_0003s21230 (11)	scaffold_3:19479036-19479370(-) (11)	NA	Q9R1C0	Transcription initiation factor TFIID subunit 7	AT1G55300.1	TBP-associated factor 7 	LOC_Os05g28010.1	"TATA-binding protein-associated factor TAFII55 family protein, putative, expressed"	Medtr3g105320.1	TAFII55 protein conserved region 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0016251|general RNA polymerase II transcription factor activity	GO:0005669|transcription factor TFIID complex
PtpAffx.203634.1.S1_at	A	A1TS	POPTR_0003s21270	POPTR_0003s21270 (11)	scaffold_3:19504804-19505310(+) (11)	NA	Q9ZP41	EG45-like domain containing protein	AT4G30380.1	Barwin-related endoglucanase 	LOC_Os09g29710.1	"beta-expansin precursor, putative, expressed"	Medtr6g084060.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203635.1.S1_at	A	A1TS	POPTR_0003s21280	POPTR_0003s21280 (9)	scaffold_3:19506513-19507286(-) (11)	NA	P81294	Major pollen allergen Jun a 1	AT5G09280.1	Pectin lyase-like superfamily protein 	LOC_Os08g18970.1	pectate lyase family protein	Medtr8g093930.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203637.1.S1_at	A	A1TS	POPTR_0003s21400	POPTR_0003s21400 (11)	scaffold_3:19577741-19578268(+) (11)	NA	Q9NUD9	GPI mannosyltransferase 2	AT1G11880.1	"transferases, transferring hexosyl groups "	LOC_Os12g31480.1	"GPI mannosyltransferase 2, putative, expressed"	Medtr4g114500.1	Protein of unknown function DUF409 	GO:0006506|GPI anchor biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.203637.1.S1_s_at	A	A1TS	POPTR_0003s21400	POPTR_0003s21400 (11)	scaffold_3:19577252-19578281(+) (11)	NA	Q9NUD9	GPI mannosyltransferase 2	AT1G11880.1	"transferases, transferring hexosyl groups "	LOC_Os12g31480.1	"GPI mannosyltransferase 2, putative, expressed"	Medtr4g114500.1	Protein of unknown function DUF409 	GO:0006506|GPI anchor biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.203638.1.S1_at	A	A1TS	POPTR_0003s21430	POPTR_0003s21430 (11)	scaffold_3:19595842-19596428(-) (11)	NA	NA	NA	AT1G55230.1	Family of unknown function (DUF716)  	LOC_Os09g27260.1	"plant viral response family protein, putative, expressed"	Medtr2g026770.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20364.1.A1_at	A	A1TS	POPTR_0010s20150	POPTR_0010s20150 (9)	scaffold_10:17855538-17855610(-) (9)	NA	P59277	Syntaxin-81	AT1G51740.1	syntaxin of plants 81 	LOC_Os12g05810.1	"syntaxin-18, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20364.1.A1_s_at	A	A2TS	POPTR_0008s06360	POPTR_0010s20150 (11)//POPTR_0008s06360 (11)	scaffold_10:17855632-17857555(-) (11)//scaffold_8:3770264-3771247(+) (11)	NA	P59277	Syntaxin-81	AT1G51740.1	syntaxin of plants 81 	LOC_Os12g05810.1	"syntaxin-18, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203640.1.S1_at	A	A1TS	POPTR_0003s21500	POPTR_0003s21500 (11)	scaffold_3:19639558-19640129(-) (11)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os02g41910.1	"OsFBO12 - F-box and other domain containing protein, expressed"	AC231357_6.1	Cyclin-like F-box; F-box protein interaction domain AC231357.5 36928-38133 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203641.1.S1_at	A	A1TS	POPTR_0003s21520	POPTR_0003s21520 (11)	scaffold_3:19647930-19648904(-) (11)	NA	Q94F88	DNA (cytosine-5)-methyltransferase CMT3	AT1G69770.1	chromomethylase 3 	LOC_Os03g12570.1	expressed protein	AC233109_26.1	Chromo; Bromo adjacent region; C-5 cytosine-specific DNA methylase AC233109.4 111187-105639 E EGN_Mt090430 200	NA	GO:0003677|DNA binding	NA
PtpAffx.203643.1.S1_at	A	A1TS	POPTR_0003s21540	POPTR_0003s21540 (11)	scaffold_3:19664656-19665157(-) (11)	NA	Q10PP8	Metal tolerance protein 4	AT3G58060.1	Cation efflux family protein 	LOC_Os03g12530.1	"cation efflux family protein, putative, expressed"	Medtr3g083790.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.203645.1.S1_at	A	A1TS	POPTR_0003s21560	POPTR_0003s21560 (11)	scaffold_3:19674896-19675828(-) (11)	NA	Q9M2P4	E3 ubiquitin-protein ligase SINAT2	AT3G58040.1	seven in absentia of Arabidopsis 2 	LOC_Os03g24040.1	"seven in absentia protein family domain containing protein, expressed"	Medtr7g112270.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.203646.1.S1_at	A	A1TS	POPTR_0003s21650	POPTR_0003s21650 (11)	scaffold_3:19726907-19727435(+) (11)	NA	Q9LEH3	Peroxidase 15	AT5G06730.1	Peroxidase superfamily protein 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	Medtr7g112100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.203647.1.S1_at	A	A1MS	POPTR_0003s21680	POPTR_0003s21680 (11)	scaffold_3:19736838-19737192(-) (11)	NA	NA	NA	AT5G19900.1	"PRLI-interacting factor, putative "	LOC_Os02g58570.1	"PRLI-interacting factor A, putative, expressed"	Medtr1g146630.1	"PRLI-interacting factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203649.1.S1_at	A	A1TS	POPTR_0003s21700	POPTR_0003s21700 (11)	scaffold_3:19773506-19774467(+) (11)	NA	Q681N2	U-box domain-containing protein 15	AT5G42340.1	Plant U-Box 15 	LOC_Os02g07190.1	expressed protein	Medtr7g005630.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.203650.1.S1_at	A	A1TS	POPTR_0003s21710	POPTR_0003s21710 (11)	scaffold_3:19776459-19776979(-) (11)	NA	NA	NA	AT5G42640.1	C2H2 and C2HC zinc fingers superfamily protein 	NA	NA	Medtr8g120770.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.203651.1.S1_at	A	A1TS	POPTR_0003s21720	POPTR_0003s21720 (11)	scaffold_3:19780079-19780550(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203652.1.S1_at	A	A1TS	POPTR_0003s21730	POPTR_0003s21730 (10)	scaffold_3:19788713-19789381(+) (10)	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.203653.1.S1_at	A	A1MS	POPTR_0003s21740	POPTR_0003s21740 (10)	scaffold_3:19796129-19797287(+) (10)	NA	Q9ZPV5	Nucleolar complex protein 2 homolog	AT2G18220.1	Noc2p family 	LOC_Os10g35280.1	"nucleolar complex protein 2, putative, expressed"	Medtr1g140790.1	Protein of unknown function UPF0120 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203655.1.S1_at	A	A1TS	POPTR_0003s21770	POPTR_0003s21770 (11)	scaffold_3:19811211-19812968(+) (11)	NA	Q9LT45	GATA transcription factor 29	AT3G20750.1	GATA transcription factor 29 	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.203656.1.S1_at	A	A1TS	POPTR_0003s21790	POPTR_0003s21790 (11)	scaffold_3:19819042-19819963(-) (11)	NA	NA	NA	AT1G73240.1	CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g45920.1	expressed protein	Medtr8g008550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203657.1.S1_at	A	A1TS	POPTR_0003s21800	POPTR_0003s21800 (11)	scaffold_3:19823119-19823586(-) (11)	NA	Q3E9B5	Putative peptide/nitrate transporter At5g19640	AT5G19640.1	Major facilitator superfamily protein 	LOC_Os02g48570.1	"peptide transporter PTR2, putative, expressed"	Medtr7g005620.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.203658.1.S1_at	A	A1TS	POPTR_0003s21810	POPTR_0003s21810 (11)	scaffold_3:19828453-19829011(+) (11)	NA	Q9C6P5	AP2/ERF and B3 domain-containing transcription factor At1g50680	AT1G50680.1	AP2/B3 transcription factor family protein 	LOC_Os05g47650.1	"B3 DNA binding domain containing protein, expressed"	Medtr1g147280.1	Pathogenesis-related transcriptional factor and ERF; Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203659.1.S1_at	A	A1TS	POPTR_0003s21830	POPTR_0003s21830 (11)	scaffold_3:19839939-19840522(-) (11)	NA	Q6BDR8	Non-structural maintenance of chromosome element 4	AT1G51130.1	"Nse4, component of Smc5/6 DNA repair complex "	LOC_Os02g10090.1	expressed protein	Medtr1g147250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203660.1.S1_at	A	A1TS	POPTR_0003s21840	POPTR_0003s21840 (11)	scaffold_3:19843968-19844994(+) (11)	NA	NA	NA	AT3G57980.1	DNA-binding bromodomain-containing protein 	LOC_Os09g31454.1	"MYB family transcription factor, putative, expressed"	Medtr2g071440.1	Myb transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203661.1.S1_at	A	A1TS	POPTR_0003s21870	POPTR_0003s21870 (11)	scaffold_3:19854214-19855705(-) (11)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.1	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203662.1.S1_at	A	A1MS	POPTR_0003s21880	POPTR_0003s21880 (10)	scaffold_3:19861571-19862053(+) (10)	NA	Q9SXP7	Octanoyltransferase	AT1G04640.2	lipoyltransferase 2 	LOC_Os03g20560.1	"biotin--protein ligase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203664.1.S1_s_at	A	A1MS	POPTR_0004s01280	POPTR_0004s01280 (11)	scaffold_4:699332-699945(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT3G28510.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g09490.1	"ATPase, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.203665.1.S1_at	A	A1TS	POPTR_0004s01350	POPTR_0004s01350 (11)	scaffold_4:740551-741702(-) (11)	NA	Q3UX43	Ankyrin repeat domain-containing protein 13C	AT1G62050.1	Ankyrin repeat family protein 	LOC_Os07g32790.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203666.1.S1_at	A	A1TS	POPTR_0004s01360	POPTR_0004s01360 (11)	scaffold_4:751057-751228(+) (11)	NA	NA	NA	AT1G11740.1	ankyrin repeat family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203667.1.S1_at	A	A1TS	POPTR_0004s01390	POPTR_0004s01390 (11)	scaffold_4:767343-768851(-) (11)	NA	A8MRC7	"Probable beta-1,3-galactosyltransferase 2"	AT1G05170.1	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.203668.1.S1_s_at	A	A2TS	POPTR_0004s01420	POPTR_0004s01420 (11)//POPTR_0004s01440 (11)	scaffold_12:549851-549895(+) (10)//scaffold_4:802347-802392(+) (11)//scaffold_4:814378-814423(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02310.1	expressed protein	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203671.1.S1_s_at	A	A4TS	POPTR_0004s01430	POPTR_0012s00850 (11)//POPTR_0004s01430 (11)//POPTR_0012s00880 (9)//POPTR_0004s01450 (9)	scaffold_12:539868-539933(+) (11)//scaffold_12:559535-559589(+) (9)//scaffold_4:809705-809770(+) (11)//scaffold_4:827975-828029(+) (9)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os04g23700.1	"lectin protein kinase family protein, putative, expressed"	Medtr2g077080.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203672.1.S1_at	A	A1TS	POPTR_0004s01460	POPTR_0004s01460 (9)	scaffold_4:834215-834803(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02310.1	expressed protein	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203674.1.S1_at	A	A1MS	POPTR_0004s01480	POPTR_0004s01480 (9)	scaffold_4:846607-847597(-) (10)	NA	NA	NA	AT1G64570.1	Homeodomain-like superfamily protein 	LOC_Os03g46950.1	"DNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203675.1.S1_at	A	A1TS	POPTR_0004s01500	POPTR_0004s01500 (10)	scaffold_4:859794-860375(+) (10)	NA	Q8W4K1	tRNA wybutosine-synthesizing protein 2/3/4	AT4G04670.1	Met-10+ like family protein / kelch repeat-containing protein 	LOC_Os07g33100.1	"uncharacterized ACR, COG1590 family protein, expressed"	Medtr8g146780.1	Protein of unknown function Met10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203675.1.S1_s_at	A	A1TS	POPTR_0004s01500	POPTR_0004s01500 (11)	scaffold_4:859431-860428(+) (11)	NA	Q8W4K1	tRNA wybutosine-synthesizing protein 2/3/4	AT4G04670.1	Met-10+ like family protein / kelch repeat-containing protein 	LOC_Os07g33100.1	"uncharacterized ACR, COG1590 family protein, expressed"	Medtr8g146780.1	Protein of unknown function Met10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203676.1.S1_at	A	A1TS	POPTR_0004s01530	POPTR_0004s01530 (11)	scaffold_4:879033-880954(-) (11)	NA	Q9ZSA2	Calcium-dependent protein kinase 21	AT4G04720.1	calcium-dependent protein kinase 21 	LOC_Os07g33110.4	"CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g146720.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203677.1.S1_at	A	A1TS	POPTR_0004s01550	POPTR_0004s01550 (11)	scaffold_4:918136-919211(+) (11)	NA	Q8RWT0	Lupeol synthase 2	AT1G78960.1	lupeol synthase 2 	LOC_Os11g08569.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.203678.1.S1_at	A	A1TS	POPTR_0004s01570	POPTR_0004s01570 (11)	scaffold_4:945792-946331(-) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT1G50660.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). 	LOC_Os05g41910.1	expressed protein	Medtr5g099930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203679.1.S1_at	A	A1MS	POPTR_0004s01570	POPTR_0004s01570 (9)	scaffold_4:947626-949047(-) (10)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT1G50660.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). 	LOC_Os05g41910.1	expressed protein	Medtr5g099930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203680.1.S1_at	A	A1TS	POPTR_0004s01580	POPTR_0004s01580 (11)	scaffold_4:955575-955917(+) (11)	NA	NA	NA	AT4G21920.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g068530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203681.1.S1_at	A	A1TS	POPTR_0004s01630	POPTR_0004s01630 (11)	scaffold_4:987042-987540(+) (11)	NA	P83326	Pectinesterase inhibitor	AT4G02250.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os01g20970.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr4g096470.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.203683.1.S1_at	A	A1TS	POPTR_0004s01670	POPTR_0004s01670 (11)	scaffold_4:1011828-1012331(+) (11)	NA	NA	NA	AT5G52890.2	AT hook motif-containing protein 	NA	NA	Medtr8g146670.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.203685.1.S1_x_at	A	A1TS	POPTR_0004s01700	POPTR_0004s01700 (9)	scaffold_4:1023205-1023356(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203686.1.S1_at	A	A1TS	POPTR_0004s01740	POPTR_0004s01740 (11)	scaffold_4:1058851-1059591(+) (11)	NA	Q50EK1	Cytochrome P450 716B1	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33440.1	"cytochrome P450, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.203687.1.S1_at	A	A1TS	POPTR_0004s01750	POPTR_0004s01750 (11)	scaffold_4:1060409-1061410(-) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203688.1.S1_at	A	A1TS	POPTR_0004s01770	POPTR_0004s01770 (11)	scaffold_4:1073300-1074934(+) (11)	NA	NA	NA	AT4G21790.1	tobamovirus multiplication 1 	LOC_Os03g36790.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203689.1.S1_at	A	A1TS	POPTR_0004s01790	POPTR_0004s01790 (11)	scaffold_4:1083232-1085500(-) (11)	NA	O01916	Probable cardiolipin synthase 1	AT4G04870.1	cardiolipin synthase 	LOC_Os01g57930.1	"CDP-alcohol phosphatidyltransferase, putative, expressed"	NA	NA	GO:0008654|phospholipid biosynthetic process	"GO:0016780|""phosphotransferase activity, for other substituted phosphate groups"""	GO:0016020|membrane
PtpAffx.203690.1.S1_at	A	A1TS	POPTR_0004s01800	POPTR_0004s01800 (11)	scaffold_4:1088333-1088992(+) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT3G20530.1	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203691.1.S1_s_at	A	A1TS	POPTR_0004s01830	POPTR_0004s01830 (11)	scaffold_4:1096857-1097262(-) (11)	NA	Q8K1N1	Calcium-independent phospholipase A2-gamma	AT1G61850.2	phospholipases;galactolipases 	LOC_Os07g33670.1	"patatin-like phospholipase family protein, expressed"	Medtr8g146470.1	Patatin 	GO:0006629|lipid metabolic process	GO:0005515|protein binding	NA
PtpAffx.203692.1.S1_at	A	A1TS	POPTR_0004s01850	POPTR_0004s01850 (11)	scaffold_4:1132128-1132377(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203693.1.S1_at	A	A1TS	POPTR_0004s01870	POPTR_0004s01870 (11)	scaffold_4:1146331-1148131(+) (11)	NA	Q9SVS0	"RNA pseudourine synthase 6, chloroplastic"	AT4G21770.1	Pseudouridine synthase family protein 	LOC_Os07g46600.1	"RNA pseudouridine synthase, putative, expressed"	Medtr7g139220.1	Pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.203694.1.S1_at	A	A1TS	POPTR_0004s01880	POPTR_0004s01880 (10)	scaffold_4:1157783-1158697(-) (11)	NA	O80690	Beta-glucosidase 46	AT1G61820.1	beta glucosidase 46 	LOC_Os04g43360.1	"Os4bglu14 - monolignol beta-glucoside homologue without catalytic acid/base, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.203695.1.S1_at	A	A1MS	POPTR_0004s01890	POPTR_0004s01890 (10)	scaffold_4:1164243-1165942(-) (11)	NA	O80690	Beta-glucosidase 46	AT1G61820.1	beta glucosidase 46 	LOC_Os04g43360.1	"Os4bglu14 - monolignol beta-glucoside homologue without catalytic acid/base, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.203696.1.S1_at	A	A1TS	POPTR_0004s01920	POPTR_0004s01920 (11)	scaffold_4:1186936-1187802(-) (11)	NA	Q9SVS1	Beta-glucosidase 47	AT4G21760.1	beta-glucosidase 47 	LOC_Os04g43410.1	"Os4bglu18 - monolignol beta-glucoside homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.203697.1.S1_at	A	A1TS	POPTR_0004s01930	POPTR_0004s01930 (11)	scaffold_4:1195033-1196291(-) (11)	NA	Q94B38	"Glucose-6-phosphate/phosphate translocator 2, chloroplastic"	AT1G61800.1	glucose-6-phosphate/phosphate translocator 2 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.203698.1.S1_at	A	A1TS	POPTR_0004s01960	POPTR_0004s01960 (11)	scaffold_4:1232500-1233137(-) (11)	NA	Q6NKX3	F-box/FBD/LRR-repeat protein At2g04230	AT2G04230.1	"FBD, F-box and Leucine Rich Repeat domains containing protein "	NA	NA	Medtr4g110770.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203699.1.S1_at	A	A1TS	POPTR_0004s01970	POPTR_0004s01970 (11)	scaffold_4:1241975-1243144(+) (11)	NA	O94913	Pre-mRNA cleavage complex 2 protein Pcf11	AT4G04885.1	PCF11P-similar protein 4 	LOC_Os08g08830.1	expressed protein	Medtr4g098610.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2037.1.A1_s_at	A	A1TS	POPTR_0004s24390	POPTR_0004s24390 (11)	scaffold_4:23076917-23077908(+) (11)	NA	NA	NA	AT2G35610.1	xyloglucanase 113 	LOC_Os03g38930.1	expressed protein	Medtr8g086800.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203700.1.S1_at	A	A1TS	POPTR_0004s01980	POPTR_0004s01980 (11)	scaffold_4:1253363-1253894(-) (11)	NA	Q93V99	Homeobox-leucine zipper protein PROTODERMAL FACTOR 2	AT4G04890.1	protodermal factor 2 	LOC_Os04g53540.3	"homeobox and START domains containing protein, putative, expressed"	Medtr2g103900.2	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.203701.1.S1_at	A	A1TS	POPTR_0004s02000	POPTR_0004s02000 (11)	scaffold_4:1270666-1272599(-) (11)	POPTR_0011s00490 (6)	NA	NA	AT4G04900.1	ROP-interactive CRIB motif-containing protein 10 	LOC_Os01g65210.1	"proton-dependent oligopeptide transport, putative, expressed"	Medtr2g093180.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203702.1.S1_at	A	A1TS	POPTR_0004s02020	POPTR_0004s02020 (11)	scaffold_4:1278179-1278527(-) (11)	NA	O49558	Pentatricopeptide repeat-containing protein At4g21170	AT4G21170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g19390.1	"PPR repeat containing protein, expressed"	Medtr8g112650.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203703.1.S1_at	A	A1TS	POPTR_0004s02070	POPTR_0004s02070 (11)	scaffold_4:1301705-1302081(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203704.1.S1_at	A	A1TS	POPTR_0004s02080	POPTR_0004s02080 (10)	scaffold_4:1305833-1306346(-) (11)	NA	Q8H159	Polyubiquitin 10	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203705.1.S1_at	A	A1TS	POPTR_0004s02090	POPTR_0004s02090 (11)	scaffold_4:1309723-1310160(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203706.1.S1_at	A	A1TS	POPTR_0004s02100	POPTR_0004s02100 (11)	scaffold_4:1311872-1313984(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203708.1.S1_at	A	A1TS	POPTR_0004s02130	POPTR_0004s02130 (11)	scaffold_4:1328910-1329356(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203709.1.S1_s_at	A	A1TS	POPTR_0004s02140	POPTR_0004s02140 (10)	scaffold_4:1332047-1332431(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203710.1.S1_at	A	A1TS	POPTR_0004s02160	POPTR_0004s02160 (11)	scaffold_4:1337337-1337879(-) (11)	NA	Q58G87	Polyubiquitin 3	AT4G05230.1	Ubiquitin-like superfamily protein 	LOC_Os12g17840.1	"ubiquitin family protein, expressed"	Medtr3g110140.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203711.1.S1_at	A	A1TS	POPTR_0004s02210	POPTR_0004s02210 (11)	scaffold_4:1374665-1375357(+) (11)	NA	Q8GVP6	"Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic"	AT4G21210.1	PPDK regulatory protein 	LOC_Os07g34640.2	"pyruvate Pi dikinase regulatory protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203713.1.S1_at	A	A1TS	POPTR_0004s02250	POPTR_0004s02250 (11)	scaffold_4:1415608-1416188(+) (11)	NA	NA	NA	AT4G05220.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os07g34720.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr7g146140.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.203714.1.S1_at	A	A1TS	POPTR_0004s02260	POPTR_0004s02260 (11)	scaffold_4:1417692-1418220(+) (11)	NA	NA	NA	AT3G20600.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	NA	NA	Medtr7g132680.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.203715.1.S1_at	A	A1MS	POPTR_0314s00200	POPTR_0314s00200 (11)	scaffold_314:6569-6710(-) (11)	POPTR_0004s02340 (8)//POPTR_0314s00210 (7)//POPTR_0004s02310 (7)	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35300.1	"TKL_IRAK_DUF26-lc.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203715.1.S1_x_at	A	A1MS	POPTR_0314s00200	POPTR_0314s00200 (11)	scaffold_314:6569-6886(-) (11)	POPTR_0004s02310 (7)//POPTR_0004s02340 (6)	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35300.1	"TKL_IRAK_DUF26-lc.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203716.1.S1_at	A	A1TS	POPTR_0004s02380	POPTR_0004s02380 (11)	scaffold_4:1504278-1504473(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203717.1.S1_s_at	A	A3TS	POPTR_0004s02300	POPTR_0004s02300 (11)//POPTR_0004s02330 (11)//POPTR_0138s00230 (10)	scaffold_1247:3789-4054(-) (9)//scaffold_138:25149-25495(+) (11)//scaffold_4:1443505-1443851(+) (11)//scaffold_4:1473362-1473708(+) (11)	POPTR_1247s00200 (6)	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35290.1	"TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203718.1.S1_s_at	A	A4TS	POPTR_0004s02310	POPTR_0314s00210 (11)//POPTR_0004s02310 (11)//POPTR_0004s02340 (11)//POPTR_0314s00200 (11)	scaffold_138:29127-29502(+) (11)//scaffold_314:7029-7404(-) (11)//scaffold_314:42179-42554(-) (11)//scaffold_4:1452102-1452477(+) (11)//scaffold_4:1478324-1478699(+) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os10g04720.1	"TKL_IRAK_DUF26-la.5 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203719.1.S1_at	A	A1MS	POPTR_0004s02380	POPTR_0004s02380 (11)	scaffold_10:9794647-9794718(+) (11)//scaffold_4:1504468-1504539(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203719.1.S1_x_at	A	A1MS	POPTR_0004s02380	POPTR_0004s02380 (11)	scaffold_10:9794647-9794718(+) (10)//scaffold_4:1504468-1504868(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203720.1.S1_at	A	A1TS	POPTR_0004s02470	POPTR_0004s02470 (11)	scaffold_4:1613600-1614286(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203721.1.S1_at	A	A1TS	POPTR_0004s02570	POPTR_0004s02570 (11)	scaffold_4:1711349-1712612(-) (11)	NA	Q9SZP1	Transcription repressor MYB4	AT4G05100.1	myb domain protein 74 	LOC_Os07g37210.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203722.1.S1_at	A	A1TS	POPTR_0004s02620	POPTR_0004s02620 (11)	scaffold_4:1737591-1751815(-) (11)	NA	NA	NA	AT5G54470.1	B-box type zinc finger family protein 	LOC_Os08g08120.3	"B-box zinc finger family protein, putative, expressed"	Medtr2g103200.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.203724.1.S1_at	A	A1TS	POPTR_0004s02730	POPTR_0004s02730 (11)	scaffold_4:1818935-1819861(-) (11)	NA	NA	NA	AT2G32235.1	unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 11; Plants - 11; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	NA	NA	Medtr4g098120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203725.1.S1_at	A	A1MS	POPTR_0004s02740	POPTR_0004s02740 (11)	scaffold_4:1824852-1825043(+) (11)	NA	Q9SXB4	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300	AT1G11300.1	protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding 	LOC_Os01g57490.1	D-mannose binding lectin family protein	Medtr4g124550.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.203726.1.S1_at	A	A1TS	POPTR_0004s02740	POPTR_0004s02740 (11)	scaffold_4:1826719-1826899(+) (11)	NA	Q9SXB4	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300	AT1G11300.1	protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding 	LOC_Os01g57490.1	D-mannose binding lectin family protein	Medtr4g124550.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.203727.1.S1_at	A	A2TS	POPTR_0728s00230	POPTR_0728s00230 (11)//POPTR_0004s02780 (10)	scaffold_4:1838842-1843823(+) (11)//scaffold_728:13286-13582(+) (11)	POPTR_0004s02760 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203728.1.S1_s_at	A	A1TS	POPTR_0004s02840	POPTR_0004s02840 (11)	scaffold_4:1882958-1883478(+) (11)	NA	O81902	U-box domain-containing protein 8	AT4G21350.1	plant U-box 8 	LOC_Os06g01304.3	"spotted leaf 11, putative, expressed"	Medtr2g011190.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.203730.1.S1_at	A	A1TS	POPTR_0004s02880	POPTR_0004s02880 (11)	scaffold_4:1944652-1945440(-) (11)	NA	NA	NA	AT5G49690.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g59030.1	"UDP-rhamnose rhamnosyltransferase, putative, expressed"	Medtr2g008360.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203731.1.S1_at	A	A1TS	POPTR_0004s02900	POPTR_0004s02900 (11)	scaffold_4:1950492-1951017(+) (11)	NA	NA	NA	AT1G11440.1	BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 19337 Blast hits to 8589 proteins in 488 species: Archae - 26; Bacteria - 641; Metazoa - 7852; Fungi - 2167; Plants - 955; Viruses - 616; Other Eukaryotes - 7080 (source: NCBI BLink). 	NA	NA	Medtr2g011050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203732.1.S1_at	A	A1TS	POPTR_0004s02920	POPTR_0004s02920 (9)	scaffold_4:1959610-1960529(-) (10)	NA	O81900	Transcription factor DYSFUNCTIONAL TAPETUM 1	AT4G21330.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02820.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.203733.1.S1_s_at	A	A2TS	POPTR_0004s02970	POPTR_0004s02990 (11)//POPTR_0004s02970 (11)	scaffold_4:1978011-1978845(-) (11)//scaffold_4:2005953-2006787(-) (11)	NA	Q84UV0	"Linalool synthase, chloroplastic"	AT1G61680.1	terpene synthase 14 	LOC_Os02g02930.1	"terpene synthase, putative, expressed"	Medtr6g070900.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.203735.1.S1_at	A	A1TS	POPTR_0004s03000	POPTR_0004s03000 (11)	scaffold_4:2016777-2017352(-) (11)	NA	Q99LI8	Hepatocyte growth factor-regulated tyrosine kinase substrate	AT1G61690.1	phosphoinositide binding 	LOC_Os03g46710.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203736.1.S1_at	A	A1TS	POPTR_0004s03020	POPTR_0004s03020 (11)	scaffold_4:2039575-2040344(-) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT3G22104.1	Phototropic-responsive NPH3 family protein 	LOC_Os07g36230.1	"BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g010960.1	NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.203737.1.S1_at	A	A1TS	POPTR_0004s03040	POPTR_0004s03040 (11)	scaffold_4:2054682-2055179(-) (11)	NA	NA	NA	AT5G54630.1	zinc finger protein-related 	LOC_Os01g57650.1	"ZOS1-12 - C2H2 zinc finger protein, expressed"	Medtr4g111260.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203738.1.S1_at	A	A1TS	POPTR_0004s03050	POPTR_0004s03050 (11)	scaffold_4:2060124-2060474(+) (11)	POPTR_0004s03070 (6)//POPTR_0004s03060 (6)	NA	NA	AT1G11925.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203739.1.S1_s_at	A	A2TS	POPTR_0004s03060	POPTR_0004s03070 (11)//POPTR_0004s03060 (11)	scaffold_4:2062731-2062772(+) (11)//scaffold_4:2064271-2064312(+) (11)	NA	NA	NA	AT1G11925.1	Stigma-specific Stig1 family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203742.1.S1_at	A	A1TS	POPTR_0004s03210	POPTR_0004s03210 (11)	scaffold_4:2149451-2149961(+) (11)	NA	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os03g36650.1	"cysteine-rich repeat secretory protein 55 precursor, putative, expressed"	Medtr2g010780.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203743.1.S1_at	A	A1TS	POPTR_0004s03220	POPTR_0004s03220 (11)	scaffold_4:2162746-2163608(-) (11)	NA	Q9ZR04	Putative cyclin-D6-1	AT4G03270.1	Cyclin D6;1 	LOC_Os07g37010.1	"cyclin, putative, expressed"	Medtr2g103030.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203745.1.S1_at	A	A1TS	POPTR_0004s03260	POPTR_0004s03260 (11)	scaffold_4:2202825-2203753(+) (11)	NA	NA	NA	AT4G05120.1	Major facilitator superfamily protein 	LOC_Os07g37100.2	"nucleoside transporter, putative, expressed"	Medtr2g103000.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
PtpAffx.203746.1.S1_at	A	A1TS	POPTR_0004s03265	POPTR_0004s03265 (11)	scaffold_4:2204700-2205197(+) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	NA	NA	LOC_Os02g41940.1	"retrotransposon protein, putative, unclassified"	Medtr5g075600.1	"Ribonuclease H; Zinc finger, U1-type; TB2/DP1 and HVA22 related protein "	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	NA
PtpAffx.203747.1.S1_at	A	A1TS	POPTR_0004s03270	POPTR_0004s03270 (11)	scaffold_4:2214973-2216168(+) (11)	NA	Q7LBC6	Lysine-specific demethylase 3B	AT4G21430.1	"Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase "	LOC_Os03g31594.1	"jmjC domain containing protein, expressed"	Medtr4g124670.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC; Zinc finger, C2H2-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203748.1.S1_at	A	A1TS	POPTR_0004s03370	POPTR_0004s03370 (10)	scaffold_4:2313939-2314946(+) (10)	NA	Q4PSN0	Probable pectinesterase 29	AT3G24130.1	Pectin lyase-like superfamily protein 	LOC_Os01g19440.1	"pectinesterase, putative"	AC146557_2.1	Pectinesterase AC146557.33 4034-7009 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203749.1.S1_at	A	A1TS	POPTR_0004s03400	POPTR_0004s03400 (11)	scaffold_4:2329531-2330050(-) (11)	NA	Q9LPW7	Protein AUXIN SIGNALING F-BOX 3	AT1G12820.1	auxin signaling F-box 3 	LOC_Os04g32460.2	"OsFBL16 - F-box domain and LRR containing protein, expressed"	Medtr4g124940.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.203751.1.S1_at	A	A1TS	POPTR_0004s03420	POPTR_0004s03420 (11)	scaffold_4:2357104-2357692(-) (11)	NA	NA	NA	AT4G21500.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05018.1); Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	NA	NA	Medtr4g124990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203753.1.S1_at	A	A1TS	POPTR_0004s03450	POPTR_0004s03450 (10)	scaffold_4:2375802-2376590(-) (10)	NA	O64787	Putative FBD-associated F-box protein At1g61330	AT1G61330.1	"FBD, F-box and Leucine Rich Repeat domains containing protein "	LOC_Os04g40370.3	"OsFBX142 - F-box domain containing protein, expressed"	Medtr7g047500.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203754.1.S1_at	A	A1TS	POPTR_0004s03460	POPTR_0004s03460 (11)	scaffold_4:2379988-2380845(-) (11)	NA	Q5XII5	Telomerase Cajal body protein 1	AT4G21520.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52794.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g125120.1	"Cytochrome cd1-nitrite reductase-like, C-terminal haem d1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203755.1.S1_at	A	A1TS	POPTR_0004s03490	POPTR_0004s03490 (11)	scaffold_4:2411133-2412772(+) (11)	NA	O65418	Anaphase-promoting complex subunit 4	AT4G21530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g54490.1	"nucleotide binding protein, putative, expressed"	Medtr4g125250.1	"nucleotide binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203756.1.S1_at	A	A1TS	POPTR_0004s03490	POPTR_0004s03490 (11)	scaffold_4:2414179-2415583(+) (11)	NA	O65418	Anaphase-promoting complex subunit 4	AT4G21530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g54490.1	"nucleotide binding protein, putative, expressed"	Medtr4g125250.1	"nucleotide binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203757.1.S1_at	A	A1TS	POPTR_0004s03500	POPTR_0004s03500 (10)	scaffold_4:2424517-2425146(-) (10)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203758.1.S1_at	A	A1TS	POPTR_0004s03500	POPTR_0004s03500 (9)	scaffold_4:2425410-2425726(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203758.1.S1_s_at	A	A1TS	POPTR_0004s03510	POPTR_0004s03510 (11)	scaffold_4:2425975-2430316(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g35470.1	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203759.1.S1_at	A	A1TS	POPTR_0004s03520	POPTR_0004s03520 (11)	scaffold_4:2433528-2435584(-) (11)	NA	NA	NA	AT1G11240.1	CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). 	LOC_Os03g23020.1	expressed protein	Medtr4g125350.1	"rRNA processing protein Rrp17 (, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203760.1.S1_at	A	A1TS	POPTR_0004s03540	POPTR_0004s03540 (11)	scaffold_4:2456412-2456982(+) (11)	NA	O64791	Syntaxin-124	AT1G61290.1	syntaxin of plants 124 	LOC_Os06g39050.1	"syntaxin, putative, expressed"	Medtr2g014030.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.203762.1.S1_at	A	A1TS	POPTR_0004s03560	POPTR_0004s03560 (11)	scaffold_4:2469902-2470308(+) (11)	NA	Q9DCD2	Pre-mRNA-splicing factor SYF1	AT5G28740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g44970.1	"XPA-binding protein 2, putative, expressed"	Medtr2g014060.1	"RNA-processing protein, HAT helix "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	GO:0005622|intracellular
PtpAffx.203763.1.S1_at	A	A1TS	POPTR_0004s03610	POPTR_0004s03610 (11)	scaffold_4:2504473-2505430(+) (11)	NA	Q10NX8	Beta-galactosidase 6	AT1G77410.1	beta-galactosidase 16 	LOC_Os12g24170.1	"beta-galactosidase precursor, putative, expressed"	Medtr4g133430.1	"D-galactoside/L-rhamnose binding SUEL lectin; Glycoside hydrolase, family 35 "	NA	GO:0005529|sugar binding	NA
PtpAffx.203764.1.S1_at	A	A1TS	POPTR_0004s03620	POPTR_0004s03620 (11)	scaffold_4:2505999-2506251(-) (11)	NA	Q53FA7	Quinone oxidoreductase PIG3	AT4G21580.1	"oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os02g56180.1	"dehydrogenase, putative, expressed"	Medtr2g014170.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.203765.1.S1_at	A	A1TS	POPTR_0004s03630	POPTR_0004s03630 (11)	scaffold_4:2515354-2515911(-) (11)	NA	P54769	Tyrosine/DOPA decarboxylase 2	AT2G20340.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os07g25590.1	"decarboxylase, putative, expressed"	Medtr7g064800.1	Pyridoxal-dependent decarboxylase; ; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.203767.1.S1_at	A	A1TS	POPTR_0004s03690	POPTR_0004s03690 (11)	scaffold_4:2557571-2557932(-) (11)	NA	Q9M5P2	Secretory carrier-associated membrane protein 3	AT1G61250.1	secretory carrier 3 	LOC_Os02g47010.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
PtpAffx.203768.1.S1_at	A	A1TS	POPTR_0004s03700	POPTR_0004s03700 (11)	scaffold_4:2561799-2565483(-) (11)	NA	NA	NA	AT1G61240.4	Protein of unknown function (DUF707) 	LOC_Os07g37760.2	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g014270.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203770.1.S1_at	A	A1MS	POPTR_0004s03760	POPTR_0004s03760 (11)	scaffold_4:2626171-2626583(-) (11)	NA	Q9P2G9	Kelch-like protein 8	AT1G16250.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g56160.1	"kelch repeat protein, putative"	Medtr2g014450.1	Kelch repeat type 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203771.1.S1_s_at	A	A1TS	POPTR_0004s03780	POPTR_0004s03780 (11)	scaffold_4:2634192-2634366(-) (11)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203773.1.S1_at	A	A1TS	POPTR_0004s03810	POPTR_0004s03810 (11)	scaffold_4:2675369-2675919(-) (11)	NA	Q96376	S-linalool synthase	AT1G61120.1	terpene synthase 04 	LOC_Os04g52230.1	"ent-kaurene synthase, chloroplast precursor, putative, expressed"	Medtr2g014530.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.203774.1.S1_at	A	A1TS	POPTR_0004s03820	POPTR_0004s03820 (11)	scaffold_4:2706696-2707078(-) (11)	NA	Q9ZNU2	NAC domain-containing protein 18	AT1G61110.1	NAC domain containing protein 25 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.203775.1.S1_at	A	A1TS	POPTR_0004s03850	POPTR_0004s03850 (11)	scaffold_4:2739713-2741058(+) (11)	NA	NA	NA	AT1G61100.1	"disease resistance protein (TIR class), putative "	LOC_Os03g64320.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203776.1.S1_at	A	A1TS	POPTR_0004s03860	POPTR_0004s03860 (10)	scaffold_4:2750257-2751108(+) (10)	NA	NA	NA	AT1G61080.1	Hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g014710.1	"Phosphoinositide-binding clathrin adaptor, N-terminal; Wiscott-Aldrich syndrome, C-terminal, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203777.1.S1_at	A	A1TS	POPTR_0004s03880	POPTR_0004s03880 (11)	scaffold_4:2756574-2757087(+) (11)	NA	Q54I39	IST1-like protein	AT2G14830.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os09g37510.1	"DUF292 domain containing protein, expressed"	Medtr4g047240.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203778.1.S1_at	A	A1TS	POPTR_0004s03900	POPTR_0004s03900 (11)	scaffold_4:2763702-2764142(-) (11)	NA	Q8LDR0	Dof zinc finger protein DOF5.4	AT5G60850.1	OBF binding protein 4 	LOC_Os02g49440.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g015060.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.203779.1.S1_at	A	A1TS	POPTR_0004s03930	POPTR_0004s03930 (11)	scaffold_4:2792279-2792551(+) (11)	NA	Q0WUU6	Probable polyol transporter 4	AT2G20780.1	Major facilitator superfamily protein 	LOC_Os04g44750.1	"transporter family protein, putative, expressed"	Medtr2g014990.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.203779.1.S1_s_at	A	A1TS	POPTR_0004s03930	POPTR_0004s03930 (11)	scaffold_4:2792000-2792260(+) (11)	NA	Q0WUU6	Probable polyol transporter 4	AT2G20780.1	Major facilitator superfamily protein 	LOC_Os04g44750.1	"transporter family protein, putative, expressed"	Medtr2g014990.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.203780.1.S1_at	A	A1TS	POPTR_0004s03940	POPTR_0004s03940 (11)	scaffold_4:2801222-2801617(-) (11)	NA	P0C8Q4	Uncharacterized protein At4g19900	AT1G61050.1	"alpha 1,4-glycosyltransferase family protein "	LOC_Os04g44740.1	"glycosyltransferase sugar-binding region containing DXD motif, putative, expressed"	Medtr2g014970.1	"Glycosyltransferase sugar-binding region containing DXD motif; Alpha 1,4-glycosyltransferase conserved region "	NA	GO:0008378|galactosyltransferase activity	GO:0005795|Golgi stack
PtpAffx.203781.1.S1_at	A	A1TS	POPTR_0004s03950	POPTR_0004s03950 (11)	scaffold_4:2810621-2812892(-) (11)	NA	Q11IJ0	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	AT4G21220.1	Trimeric LpxA-like enzymes superfamily protein 	LOC_Os07g04200.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr7g047320.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
PtpAffx.203782.1.S1_at	A	A1TS	POPTR_0004s03960	POPTR_0004s03960 (11)	scaffold_4:2814557-2814819(-) (11)	NA	O94667	RNA polymerase-associated protein C651.09c	AT1G61040.1	plus-3 domain-containing protein 	LOC_Os12g35030.1	"plus-3 domain containing protein, expressed"	Medtr7g117510.1	Plus-3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.203782.1.S1_s_at	A	A1TS	POPTR_0004s03960	POPTR_0004s03960 (11)	scaffold_4:2814463-2815030(-) (11)	NA	O94667	RNA polymerase-associated protein C651.09c	AT1G61040.1	plus-3 domain-containing protein 	LOC_Os12g35030.1	"plus-3 domain containing protein, expressed"	Medtr7g117510.1	Plus-3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.203783.1.S1_at	A	A1TS	POPTR_0004s04000	POPTR_0004s04000 (11)	scaffold_4:2833307-2834939(-) (11)	NA	Q65Z40	Wings apart-like protein homolog	AT1G11060.1	WAPL (Wings apart-like protein regulation of heterochromatin) protein 	LOC_Os10g35380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203783.1.S1_s_at	A	A2TS	POPTR_0004s04000	POPTR_0011s04900 (11)//POPTR_0004s04000 (11)	scaffold_11:4851478-4854952(-) (10)//scaffold_4:2833349-2835944(-) (11)	NA	Q65Z40	Wings apart-like protein homolog	AT1G11060.1	WAPL (Wings apart-like protein regulation of heterochromatin) protein 	LOC_Os10g35380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203783.1.S1_x_at	A	A1TS	POPTR_0004s04000	POPTR_0004s04000 (11)	scaffold_4:2833268-2834951(-) (11)	NA	Q65Z40	Wings apart-like protein homolog	AT1G11060.1	WAPL (Wings apart-like protein regulation of heterochromatin) protein 	LOC_Os10g35380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203784.1.S1_s_at	A	A1TS	POPTR_0004s04010	POPTR_0004s04010 (11)	scaffold_4:2853417-2855225(+) (11)	NA	Q5YDB6	RNA polymerase II C-terminal domain phosphatase-like 1	AT4G21670.1	C-terminal domain phosphatase-like 1 	LOC_Os02g42600.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g024780.1	NLI interacting factor 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.203785.1.S1_s_at	A	A2TS	POPTR_0004s04040	POPTR_0004s04050 (11)//POPTR_0004s04040 (11)	scaffold_4:2890273-2890311(+) (11)//scaffold_4:2907538-2907576(+) (11)	NA	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203786.1.S1_at	A	A1MS	POPTR_0004s04040	POPTR_0004s04040 (11)	scaffold_4:2892615-2892810(+) (11)	POPTR_0004s04050 (8)	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203787.1.S1_at	A	A1TS	POPTR_0004s06800	POPTR_0004s06800 (11)	scaffold_4:5439481-5440427(-) (11)	NA	O81242	DNA-binding protein RHL1	AT1G48380.1	root hair initiation protein root hairless 1 (RHL1) 	LOC_Os07g07580.3	"ROOT HAIRLESS 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203789.1.S1_at	A	A1TS	POPTR_0004s06790	POPTR_0004s06790 (11)	scaffold_4:5434756-5435314(+) (11)	NA	Q9SHY2	Probable metal-nicotianamine transporter YSL7	AT1G65730.1	YELLOW STRIPE like 7 	LOC_Os04g44320.1	"transposon protein, putative, unclassified, expressed"	Medtr6g089710.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203791.1.S1_at	A	A1TS	POPTR_0004s06620	POPTR_0004s06620 (11)	scaffold_4:5311995-5313019(+) (11)	NA	NA	NA	AT2G31270.1	homolog of yeast CDT1 A 	LOC_Os04g10650.1	"CDT1A - Putative DNA replication initiation protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203792.1.S1_at	A	A1TS	POPTR_0004s06610	POPTR_0004s06610 (11)	scaffold_4:5305810-5306327(-) (11)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr6g070610.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.203793.1.S1_at	A	A1MS	POPTR_0004s06580	POPTR_0004s06580 (11)	scaffold_4:5288931-5289298(-) (11)	NA	Q803H0	UPF0415 protein C7orf25 homolog	AT1G73380.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733); Has 162 Blast hits to 160 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os10g34810.1	expressed protein	Medtr6g083960.1	Protein of unknown function DUF1308 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203794.1.S1_at	A	A1TS	POPTR_0004s06570	POPTR_0004s06570 (11)	scaffold_4:5285913-5286400(+) (11)	NA	NA	NA	AT1G54540.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os04g58090.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g084030.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.203795.1.S1_at	A	A1TS	POPTR_0004s06520	POPTR_0004s06520 (11)	scaffold_4:5258987-5259458(-) (11)	NA	O81028	"Pentatricopeptide repeat-containing protein At2g26790, mitochondrial"	AT2G26790.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g43080.1	"PPR repeat domain containing protein, putative"	Medtr3g123920.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203796.1.S1_at	A	A1TS	POPTR_0004s06510	POPTR_0004s06510 (11)	scaffold_4:5255222-5255475(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g32340.1	"Spc97 / Spc98 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203797.1.S1_at	A	A1TS	POPTR_0004s06500	POPTR_0004s06500 (11)	scaffold_4:5252010-5252476(-) (11)	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os10g35040.1	"receptor kinase like protein, putative"	Medtr6g083860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203798.1.S1_at	A	A1TS	POPTR_0004s06440	POPTR_0004s06440 (11)	scaffold_4:5203040-5203456(+) (11)	NA	Q93V43	Transcription factor TCP2	AT4G18390.2	"TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 "	LOC_Os07g05720.1	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203799.1.S1_at	A	A1TS	POPTR_0004s06410	POPTR_0004s06410 (11)	scaffold_4:5159894-5160468(+) (11)	NA	NA	NA	AT1G30190.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34610.1); Has 56 Blast hits to 56 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	NA	NA	Medtr2g024400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203800.1.S1_at	A	A1TS	POPTR_0004s06380	POPTR_0004s06380 (11)	scaffold_4:5109817-5110699(+) (11)	NA	Q9XG83	Gibberellin 2-beta-dioxygenase	AT1G30040.1	gibberellin 2-oxidase 	LOC_Os01g55240.1	"gibberellin 2-beta-dioxygenase, putative, expressed"	Medtr2g024600.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.203801.1.S1_at	A	A1TS	POPTR_0004s06370	POPTR_0004s06370 (11)	scaffold_4:5077546-5079223(+) (11)	NA	NA	NA	AT2G34540.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g024630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203802.1.S1_at	A	A1TS	POPTR_0004s06360	POPTR_0004s06360 (11)	scaffold_4:5075283-5076501(-) (11)	NA	NA	NA	AT2G34530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34540.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g024630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203803.1.S1_at	A	A1TS	POPTR_0004s06340	POPTR_0004s06340 (10)	scaffold_4:5059733-5062151(+) (10)	NA	Q9SYM4	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1"	AT1G78580.1	trehalose-6-phosphate synthase 	LOC_Os05g44210.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g136450.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.203804.1.S1_at	A	A1TS	POPTR_0004s06290	POPTR_0004s06290 (11)	scaffold_4:4986344-4986924(+) (11)	NA	Q93VV5	Probable peptide/nitrate transporter At1g59740	AT1G59740.1	Major facilitator superfamily protein 	LOC_Os01g54515.1	"peptide transporter PTR2, putative, expressed"	Medtr2g021270.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.203805.1.S1_at	A	A1TS	POPTR_0004s06210	POPTR_0004s06210 (11)	scaffold_4:4936185-4937066(+) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203806.1.S1_s_at	A	A1TS	POPTR_0004s06180	POPTR_0004s06180 (11)	scaffold_4:4909584-4910433(+) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203807.1.S1_at	A	A1MS	POPTR_0004s06170	POPTR_0004s06170 (10)	scaffold_4:4885113-4885577(-) (10)	NA	NA	NA	AT1G29760.1	Putative adipose-regulatory protein (Seipin) 	LOC_Os09g36360.1	"protein of unknown function containing protein, expressed"	Medtr4g136210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203808.1.S1_at	A	A1TS	POPTR_0004s06150	POPTR_0004s06150 (11)	scaffold_4:4870410-4870801(-) (11)	NA	Q9PTJ6	CTD small phosphatase-like protein	AT5G45700.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g11570.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g021560.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203809.1.S1_at	A	A1TS	POPTR_0004s06110	POPTR_0004s06110 (11)	scaffold_4:4855248-4856751(-) (11)	NA	Q9URW6	SH3 domain-containing protein PJ696.02	AT1G29800.2	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os02g13890.1	"FYVE zinc finger domain containing protein, expressed"	Medtr2g021650.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203810.1.S1_at	A	A1TS	POPTR_0004s06080	POPTR_0004s06080 (11)	scaffold_4:4837960-4838760(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203811.1.S1_at	A	A1TS	POPTR_0004s06070	POPTR_0004s06070 (11)	scaffold_4:4827062-4827626(+) (11)	NA	NA	NA	AT4G18830.1	ovate family protein 5 	LOC_Os01g54570.1	DUF623 domain containing protein	Medtr4g135890.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203812.1.S1_s_at	A	A1TS	POPTR_0004s06060	POPTR_0004s06060 (11)	scaffold_4:4821789-4822544(-) (11)	NA	NA	NA	AT1G17030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19030.1	expressed protein	Medtr1g105900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203813.1.S1_at	A	A1TS	POPTR_0004s06040	POPTR_0004s06040 (11)	scaffold_4:4806885-4807422(+) (11)	NA	Q9C7R6	U-box domain-containing protein 17	AT1G29340.1	plant U-box 17 	LOC_Os02g13960.1	"spotted leaf 11, putative, expressed"	Medtr2g021720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.203814.1.S1_at	A	A1TS	POPTR_0004s06010	POPTR_0004s06010 (11)	scaffold_4:4742889-4743009(-) (11)	NA	NA	NA	AT1G29300.1	Plant protein of unknown function (DUF641) 	LOC_Os10g23220.2	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203814.1.S1_x_at	A	A1TS	POPTR_0004s06010	POPTR_0004s06010 (11)	scaffold_4:4742662-4743009(-) (11)	NA	NA	NA	AT1G29300.1	Plant protein of unknown function (DUF641) 	LOC_Os10g23220.2	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203816.1.S1_at	A	A1TS	POPTR_0004s05990	POPTR_0004s05990 (11)	scaffold_4:4721387-4722343(-) (11)	NA	P15710	Phosphate-repressible phosphate permease	NA	NA	NA	NA	NA	NA	GO:0006817|phosphate transport	GO:0005315|inorganic phosphate transmembrane transporter activity	GO:0016020|membrane
PtpAffx.203817.1.S1_at	A	A1TS	POPTR_0004s05910	POPTR_0004s05910 (11)	scaffold_4:4651655-4651794(+) (11)	NA	NA	NA	AT1G29270.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g27090.1	"basic helix-loop-helix domain containing protein, expressed"	Medtr4g135450.1	transcription regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203818.1.S1_x_at	A	A1TS	POPTR_0001s39700	POPTR_0001s39700 (11)	scaffold_1:38997049-38997254(+) (11)//scaffold_12:501520-501644(-) (10)//scaffold_432:8837-9042(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203819.1.S1_at	A	A1TS	POPTR_0004s05880	POPTR_0004s05880 (11)	scaffold_4:4608967-4609235(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g23190.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr4g137750.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203821.1.S1_at	A	A1TS	POPTR_0004s05840	POPTR_0004s05840 (9)	scaffold_4:4577972-4578284(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203822.1.S1_at	A	A1TS	POPTR_0004s05820	POPTR_0004s05820 (11)	scaffold_4:4559288-4559850(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT4G18760.1	receptor like protein 51 	LOC_Os01g54630.1	"leucine rich repeat family protein, putative, expressed"	Medtr4g134980.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.203823.1.S1_at	A	A1TS	POPTR_0004s05810	POPTR_0004s05810 (11)	scaffold_4:4551903-4552495(+) (11)	NA	Q9SN39	"Pentatricopeptide repeat-containing protein At4g18750, chloroplastic"	AT4G18750.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g10800.1	"pentatricopeptide, putative, expressed"	Medtr4g129330.1	Protein of unknown function DUF177 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203824.1.S1_at	A	A1TS	POPTR_0004s05800	POPTR_0004s05800 (11)	scaffold_4:4547781-4549511(-) (11)	NA	NA	NA	AT4G18740.1	Rho termination factor 	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006353|transcription termination	GO:0003715|transcription termination factor activity	NA
PtpAffx.203825.1.S1_at	A	A1TS	POPTR_0004s05790	POPTR_0004s05790 (11)	scaffold_4:4543072-4544294(+) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g53130.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g134950.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203826.1.S1_s_at	A	A1TS	POPTR_0004s05740	POPTR_0004s05740 (11)	scaffold_4:4493240-4493518(+) (11)	NA	Q9UHR5	SAP30-binding protein	AT1G29220.1	transcriptional regulator family protein 	LOC_Os01g55490.1	"transcriptional regulator family protein, putative, expressed"	Medtr1g107610.1	HCNGP-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203827.1.S1_at	A	A1TS	POPTR_0004s05730	POPTR_0004s05730 (11)	scaffold_4:4488937-4489124(+) (11)	NA	Q49KW8	Cytochrome b6	ATCG00720.1	photosynthetic electron transfer B 	LOC_Os10g21324.1	"cytochrome b6, putative"	Medtr7g118440.1	"Cytochrome b/b6, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203828.1.S1_at	A	A1TS	POPTR_0004s05720	POPTR_0004s05720 (11)	scaffold_4:4484739-4485218(+) (11)	NA	C0LGK9	Probable LRR receptor-like serine/threonine-protein kinase At2g24230	AT5G45800.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g17410.1	"BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed"	Medtr4g134880.1	Tyrosine protein kinase; Ribosomal protein S2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203829.1.S1_at	A	A1TS	POPTR_0004s05660	POPTR_0004s05660 (9)	scaffold_4:4424521-4425131(-) (10)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G38300.1	myb-like HTH transcriptional regulator family protein 	LOC_Os06g35140.1	"MYB family transcription factor, putative, expressed"	Medtr4g134780.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203831.1.S1_at	A	A1TS	POPTR_0004s05620	POPTR_0004s05620 (11)	scaffold_4:4379795-4380238(-) (11)	NA	NA	NA	AT1G29195.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g55370.1	expressed protein	Medtr3g033710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203833.1.S1_at	A	A1TS	POPTR_0004s05600	POPTR_0004s05600 (11)	scaffold_4:4330015-4330498(-) (11)	NA	Q9LP46	Protein SCAR3	AT1G29170.1	SCAR family protein 	LOC_Os01g11040.1	"SCAR-like protein 2, putative, expressed"	Medtr4g134650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203834.1.S1_s_at	A	A1TS	POPTR_0004s05570	POPTR_0004s05570 (11)	scaffold_4:4307363-4307623(+) (11)	NA	NA	NA	AT1G06330.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g55320.1	heavy metal-associated domain containing protein	Medtr4g140470.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.203835.1.S1_at	A	A1TS	POPTR_0004s05560	POPTR_0004s05560 (11)	scaffold_4:4300674-4301035(-) (11)	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os01g46390.1	"DUF538 domain containing protein, putative"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203836.1.S1_at	A	A1TS	POPTR_0004s05490	POPTR_0004s05490 (11)	scaffold_4:4237587-4237837(-) (11)	NA	O80674	Transcription factor bHLH106	AT2G41130.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr4g128050.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.203837.1.S1_at	A	A1TS	POPTR_0004s05490	POPTR_0004s05490 (11)	scaffold_4:4234603-4235200(-) (11)	NA	O80674	Transcription factor bHLH106	AT2G41130.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr4g128050.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.203837.1.S1_s_at	A	A1TS	POPTR_0004s05490	POPTR_0004s05490 (11)	scaffold_4:4234647-4235108(-) (11)	NA	O80674	Transcription factor bHLH106	AT2G41130.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr4g128050.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.203838.1.S1_at	A	A1TS	POPTR_0004s05470	POPTR_0004s05470 (11)	scaffold_4:4224669-4225245(-) (11)	NA	Q94CD5	Ubiquitin-like modifier-activating enzyme atg7	AT5G45900.1	ThiF family protein 	LOC_Os01g42850.2	"ThiF family domain containing protein, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	NA
PtpAffx.203839.1.S1_at	A	A1TS	POPTR_0004s05460	POPTR_0004s05460 (11)	scaffold_4:4204266-4204798(-) (11)	NA	Q9CAG5	U-box domain-containing protein 7	AT2G27430.1	ARM repeat superfamily protein 	LOC_Os05g49810.1	armadillo/beta-catenin-like repeat containing protein	Medtr3g138130.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203840.1.S1_x_at	A	A1TS	POPTR_0004s05450	POPTR_0004s05450 (11)	scaffold_4:4201507-4202462(-) (11)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g42820.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.203841.1.S1_at	A	A1TS	POPTR_0004s05440	POPTR_0004s05440 (11)	scaffold_4:4191428-4192745(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203842.1.S1_at	A	A1TS	POPTR_0004s05430	POPTR_0004s05430 (11)	scaffold_4:4185080-4185519(-) (11)	NA	O81346	Tryptophan N-hydroxylase 1	AT4G39950.1	"cytochrome P450, family 79, subfamily B, polypeptide 2 "	LOC_Os04g08828.1	"cytochrome P450, putative, expressed"	Medtr8g088330.1	Cecropin; Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.203844.1.S1_at	A	A1TS	POPTR_0004s05390	POPTR_0004s05390 (11)	scaffold_4:4137968-4139629(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203845.1.S1_s_at	A	A1TS	POPTR_0004s05370	POPTR_0004s05370 (11)	scaffold_4:4105277-4105569(-) (11)	NA	NA	NA	AT4G18540.1	unknown protein; Has 209 Blast hits to 205 proteins in 54 species: Archae - 0; Bacteria - 17; Metazoa - 2; Fungi - 150; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g42760.1	"integral membrane protein TmpA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203847.1.S1_s_at	A	A1TS	POPTR_0004s05360	POPTR_0004s05360 (11)	scaffold_4:4092049-4093692(+) (11)	NA	Q9FJ45	GDSL esterase/lipase At5g45910	AT5G45910.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g11710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019090.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.203848.1.S1_at	A	A1TS	POPTR_0004s05340	POPTR_0004s05340 (11)	scaffold_4:4078722-4079312(+) (11)	NA	P17783	"Malate dehydrogenase, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.20385.1.S1_s_at	A	A1TS	POPTR_0019s11340	POPTR_0019s11340 (11)	scaffold_19:12663972-12664512(-) (11)	NA	Q4V893	Uncharacterized protein KIAA1704 homolog	AT1G65280.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g33800.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g104870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.203850.1.S1_at	A	A1TS	POPTR_0004s05320	POPTR_0004s05320 (11)	scaffold_4:4064276-4064768(+) (11)	NA	Q1PFQ9	"Pentatricopeptide repeat-containing protein At1g28690, mitochondrial"	AT1G28690.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g25380.1	"pentatricopeptide, putative, expressed"	Medtr2g018960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203851.1.S1_at	A	A1TS	POPTR_0004s05280	POPTR_0004s05280 (11)	scaffold_4:4005929-4006088(-) (11)	NA	Q8LL69	3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase	AT1G28680.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g06180.1	"transferase family protein, putative, expressed"	Medtr2g018860.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.203851.1.S1_s_at	A	A1TS	POPTR_0004s05280	POPTR_0004s05280 (11)	scaffold_4:4005978-4006390(-) (11)	NA	Q8LL69	3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase	AT1G28680.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g06180.1	"transferase family protein, putative, expressed"	Medtr2g018860.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.203852.1.S1_at	A	A1TS	POPTR_0004s05220	POPTR_0004s05220 (11)	scaffold_4:3966931-3968327(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g018750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203853.1.S1_at	A	A1TS	POPTR_0004s05210	POPTR_0004s05210 (11)	scaffold_4:3960453-3961150(+) (11)	NA	NA	NA	AT1G53210.1	sodium/calcium exchanger family protein / calcium-binding EF hand family protein 	LOC_Os02g14980.1	"calcium-binding EF hand family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203855.1.S1_at	A	A1TS	POPTR_0004s05150	POPTR_0004s05150 (11)	scaffold_4:3893708-3893963(+) (11)	NA	Q5TC12	ATP synthase mitochondrial F1 complex assembly factor 1	AT2G34050.1	"INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304 Blast hits to 304 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). "	LOC_Os02g20860.1	"ATP11 protein, expressed"	NA	NA	GO:0006461|protein complex assembly	NA	GO:0005739|mitochondrion
PtpAffx.203856.1.S1_at	A	A1TS	POPTR_0004s05130	POPTR_0004s05130 (11)	scaffold_4:3876539-3877836(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203857.1.S1_at	A	A1TS	POPTR_0004s05110	POPTR_0004s05110 (11)	scaffold_4:3859898-3860015(-) (11)	NA	O49515	Ethylene-responsive transcription factor ERF091	AT4G18450.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g49010.1	"AP2 domain containing protein, expressed"	Medtr2g018540.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203857.1.S1_x_at	A	A1TS	POPTR_0004s05110	POPTR_0004s05110 (11)	scaffold_4:3859898-3860110(-) (11)	NA	O49515	Ethylene-responsive transcription factor ERF091	AT4G18450.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g49010.1	"AP2 domain containing protein, expressed"	Medtr2g018540.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.203858.1.S1_at	A	A1TS	POPTR_0004s05090	POPTR_0004s05090 (11)	scaffold_4:3833837-3834780(-) (11)	NA	Q6X7J4	WUSCHEL-related homeobox 9	AT2G33880.1	homeobox-3 	LOC_Os05g48990.1	"homeobox domain containing protein, expressed"	Medtr2g018480.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.20386.1.A1_at	A	A1TS	POPTR_0010s20680	POPTR_0010s20680 (11)	scaffold_10:18179529-18179924(+) (11)	NA	O22285	Probable methyltransferase PMT11	AT2G39750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g62800.1	"methyltransferase, putative, expressed"	Medtr3g092020.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.203860.1.S1_at	A	A1TS	POPTR_0004s05040	POPTR_0004s05040 (11)	scaffold_4:3793455-3793840(+) (11)	NA	NA	NA	AT1G28530.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g01970.1	expressed protein	Medtr2g018350.1	"F3M18.3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203861.1.S1_at	A	A1TS	POPTR_0004s05030	POPTR_0004s05030 (11)	scaffold_4:3786962-3787330(+) (11)	NA	NA	NA	AT1G28520.2	vascular plant one zinc finger protein 	LOC_Os01g54930.1	"one zinc finger protein, putative, expressed"	Medtr4g109030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203862.1.S1_at	A	A1TS	POPTR_0004s05000	POPTR_0004s05000 (11)	scaffold_4:3759466-3760028(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203863.1.S1_at	A	A1TS	POPTR_0004s04990	POPTR_0004s04990 (11)	scaffold_4:3753485-3754058(-) (11)	NA	O22308	Isoflavone-7-O-methyltransferase 6	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr5g082590.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.203864.1.S1_at	A	A1TS	POPTR_0004s04980	POPTR_0004s04980 (11)	scaffold_4:3749101-3749856(-) (11)	NA	O22309	Isoflavone-7-O-methyltransferase 9	AT4G35160.1	O-methyltransferase family protein 	LOC_Os12g25450.1	"O-methyltransferase, putative, expressed"	Medtr5g082590.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.203865.1.S1_at	A	A1TS	POPTR_0004s04960	POPTR_0004s04960 (11)	scaffold_4:3719604-3720848(-) (11)	NA	O80961	MLO-like protein 12	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr4g108950.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.203866.1.S1_s_at	A	A1TS	POPTR_0004s04920	POPTR_0004s04920 (11)	scaffold_4:3688271-3688732(-) (11)	NA	O49255	NAC domain-containing protein 29	AT1G61110.1	NAC domain containing protein 25 	LOC_Os11g03300.1	"NAC domain transcription factor, putative, expressed"	Medtr2g110730.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.203867.1.S1_at	A	A1TS	POPTR_0004s04890	POPTR_0004s04890 (11)	scaffold_4:3653893-3654385(+) (11)	NA	Q9LX29	Serine/threonine-protein kinase-like protein ACR4	AT5G46080.1	Protein kinase superfamily protein 	LOC_Os02g05940.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr2g018170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203868.1.S1_at	A	A1TS	POPTR_0004s04870	POPTR_0004s04870 (11)	scaffold_4:3618933-3619403(-) (11)	NA	NA	NA	AT4G18425.1	Protein of unknown function (DUF679) 	LOC_Os05g48840.1	expressed protein	Medtr2g018110.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203868.1.S1_x_at	A	A1TS	POPTR_0004s04870	POPTR_0004s04870 (11)	scaffold_4:3618936-3619403(-) (11)	NA	NA	NA	AT4G18425.1	Protein of unknown function (DUF679) 	LOC_Os05g48840.1	expressed protein	Medtr2g018110.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203869.1.S1_at	A	A1TS	POPTR_0004s04850	POPTR_0004s04850 (9)	scaffold_4:3604676-3605046(+) (10)	NA	O64773	Probable CCR4-associated factor 1 homolog 5	AT1G61470.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os09g24990.2	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.203870.1.S1_at	A	A1TS	POPTR_0004s04840	POPTR_0004s04840 (11)	scaffold_4:3588969-3590435(-) (11)	NA	NA	NA	AT1G28420.1	homeobox-1 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr2g018010.1	DDT; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.203871.1.S1_at	A	A1TS	POPTR_0004s04810	POPTR_0004s04810 (11)	scaffold_4:3566625-3568738(-) (11)	NA	NA	NA	AT1G28410.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.2); Has 425 Blast hits to 402 proteins in 77 species: Archae - 4; Bacteria - 22; Metazoa - 249; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). 	LOC_Os02g20270.1	expressed protein	Medtr2g017960.1	"F3M18.15, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203872.1.S1_at	A	A1TS	POPTR_0004s04760	POPTR_0004s04760 (11)	scaffold_4:3534445-3535077(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203873.1.S1_at	A	A1TS	POPTR_0004s04740	POPTR_0004s04740 (11)	scaffold_4:3494972-3495481(-) (11)	NA	Q7Y211	"Pentatricopeptide repeat-containing protein At3g57430, chloroplastic"	AT3G57430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g07780.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	Medtr1g083640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203874.1.S1_at	A	A1TS	POPTR_0004s04730	POPTR_0004s04730 (11)	scaffold_4:3493610-3494140(+) (11)	NA	NA	NA	AT1G28380.1	MAC/Perforin domain-containing protein 	LOC_Os05g48360.2	"membrane attack complex component/perforin/complement C9, putative, expressed"	Medtr2g005520.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203875.1.S1_at	A	A1TS	POPTR_0004s04690	POPTR_0004s04690 (11)	scaffold_4:3436182-3437291(+) (11)	NA	C0LGD6	Probable LRR receptor-like serine/threonine-protein kinase At1g05700	AT1G28340.1	receptor like protein 4 	LOC_Os07g31840.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g017800.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.203876.1.S1_at	A	A1TS	POPTR_0004s04680	POPTR_0004s04680 (11)	scaffold_4:3422620-3424412(-) (11)	NA	Q84VG7	Zinc finger CCCH domain-containing protein 27	AT2G33835.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os03g11580.1	expressed protein	Medtr2g017760.1	"Zinc finger, CCCH-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203877.1.S1_at	A	A1TS	POPTR_0004s04670	POPTR_0004s04670 (11)	scaffold_4:3416644-3416839(-) (11)	NA	Q05349	Auxin-repressed 12.5 kDa protein	AT1G28330.1	dormancy-associated protein-like 1 	LOC_Os11g44810.1	"auxin-repressed protein, putative, expressed"	Medtr2g017720.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203877.1.S1_x_at	A	A1TS	POPTR_0004s04670	POPTR_0004s04670 (11)	scaffold_4:3416534-3416839(-) (11)	NA	Q05349	Auxin-repressed 12.5 kDa protein	AT1G28330.1	dormancy-associated protein-like 1 	LOC_Os11g44810.1	"auxin-repressed protein, putative, expressed"	Medtr2g017720.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203878.1.S1_at	A	A1TS	POPTR_0004s04650	POPTR_0004s04650 (11)	scaffold_4:3400146-3402808(-) (11)	NA	Q2T9J0	Peroxisomal leader peptide-processing protease	AT1G28320.1	protease-related 	LOC_Os05g41810.1	"OsDegp8 - Putative Deg protease homologue, expressed"	Medtr2g017690.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203879.1.S1_x_at	A	A1MS	POPTR_0004s04640	POPTR_0004s04640 (9)	scaffold_4:3394987-3395660(-) (9)	NA	Q54FE6	Mitochondrial substrate carrier family protein S	AT2G33820.1	Mitochondrial substrate carrier family protein 	LOC_Os11g23170.2	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203880.1.S1_at	A	A1TS	POPTR_0004s04620	POPTR_0004s04620 (11)	scaffold_4:3362710-3363071(-) (11)	POPTR_0011s05450 (7)	Q9FZA4	Dof zinc finger protein DOF1.4	AT1G28310.2	Dof-type zinc finger DNA-binding family protein 	LOC_Os07g32510.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g017650.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.203881.1.S1_at	A	A1TS	POPTR_0004s04610	POPTR_0004s04610 (11)	scaffold_4:3357496-3357830(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203882.1.S1_at	A	A1TS	POPTR_0004s04590	POPTR_0004s04590 (11)	scaffold_4:3315005-3315227(+) (11)	NA	Q8LDR0	Dof zinc finger protein DOF5.4	AT5G60850.1	OBF binding protein 4 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g017570.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.203882.1.S1_x_at	A	A1TS	POPTR_0004s04590	POPTR_0004s04590 (11)	scaffold_4:3315005-3315231(+) (11)	NA	Q8LDR0	Dof zinc finger protein DOF5.4	AT5G60850.1	OBF binding protein 4 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g017570.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.203883.1.S1_at	A	A1TS	POPTR_0004s04560	POPTR_0004s04560 (11)	scaffold_4:3299112-3299469(-) (11)	NA	Q1PFR7	B3 domain-containing transcription factor LEC2	AT1G28300.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g68370.2	"B3 DNA binding domain containing protein, expressed"	Medtr7g096720.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.203883.1.S1_x_at	A	A1TS	POPTR_0004s04560	POPTR_0004s04560 (9)	scaffold_4:3299084-3299870(-) (11)	NA	Q1PFR7	B3 domain-containing transcription factor LEC2	AT1G28300.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g68370.2	"B3 DNA binding domain containing protein, expressed"	Medtr7g096720.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.203884.1.S1_at	A	A1TS	POPTR_0004s04540	POPTR_0004s04540 (11)	scaffold_4:3288486-3290791(+) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr2g017520.1	Lissencephaly type-1-like homology motif; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203885.1.S1_at	A	A1TS	POPTR_0004s04530	POPTR_0004s04530 (9)	scaffold_4:3283486-3284013(+) (9)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.7	LEUNIG_homolog 	LOC_Os01g42260.4	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr7g064530.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203886.1.S1_at	A	A1TS	POPTR_0004s04520	POPTR_0004s04520 (11)	scaffold_4:3272504-3272970(+) (11)	NA	NA	NA	AT1G28250.1	unknown protein; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g20410.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203887.1.S1_at	A	A1TS	POPTR_0004s04510	POPTR_0004s04510 (11)	scaffold_4:3267496-3268073(+) (11)	NA	P61406	Telomerase-binding protein EST1A	AT1G28260.2	Telomerase activating protein Est1 	LOC_Os08g21350.3	"cig3, putative, expressed"	Medtr2g017490.1	"cig3, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203888.1.S1_s_at	A	A2TS	POPTR_0004s04470	POPTR_0004s04470 (11)//POPTR_0004s04480 (11)	scaffold_4:3239822-3239983(-) (11)//scaffold_4:3247691-3247852(-) (11)	NA	NA	NA	AT1G28270.1	ralf-like 4 	LOC_Os01g25560.1	"RALFL7 - Rapid ALkalinization Factor RALF family protein precursor, expressed"	Medtr8g138780.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203890.1.S1_at	A	A1TS	POPTR_0004s04410	POPTR_0004s04410 (11)	scaffold_4:3170704-3171153(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT4G04960.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr2g017340.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203891.1.S1_at	A	A1TS	POPTR_0004s04350	POPTR_0004s04350 (11)	scaffold_4:3112516-3113835(-) (11)	NA	Q8VY10	Probable ubiquitin-conjugating enzyme E2 24	AT2G33770.1	phosphate 2 	LOC_Os05g48390.1	"ubiquitin conjugating enzyme protein, putative, expressed"	Medtr2g017250.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.203892.1.S1_at	A	A1TS	POPTR_0004s04340	POPTR_0004s04340 (11)	scaffold_4:3110391-3110799(+) (11)	NA	P93011	Pentatricopeptide repeat-containing protein At2g33760	AT2G33760.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g08140.1	"pentatricopeptide, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203892.1.S1_x_at	A	A1TS	POPTR_0004s04340	POPTR_0004s04340 (11)	scaffold_4:3110369-3110799(+) (11)	NA	P93011	Pentatricopeptide repeat-containing protein At2g33760	AT2G33760.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g08140.1	"pentatricopeptide, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203893.1.S1_s_at	A	A1TS	POPTR_0004s04330	POPTR_0004s04330 (11)	scaffold_4:3106807-3107376(+) (11)	NA	B9RZ92	UPF0497 membrane protein 1	AT1G03700.1	Uncharacterised protein family (UPF0497) 	LOC_Os05g15630.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g111640.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203894.1.S1_at	A	A1TS	POPTR_0004s04320	POPTR_0004s04320 (11)	scaffold_4:3092849-3094361(-) (11)	NA	Q42877	DNA-directed RNA polymerase II subunit RPB2	AT4G21710.1	DNA-directed RNA polymerase family protein 	LOC_Os03g44484.2	"DNA-directed RNA polymerase II subunit RPB2, putative, expressed"	Medtr1g028340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.203895.1.S1_at	A	A1TS	POPTR_0004s04300	POPTR_0004s04300 (10)	scaffold_4:3084768-3085276(+) (10)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT3G57880.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr7g111440.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203897.1.S1_at	A	A1TS	POPTR_0004s04280	POPTR_0004s04280 (11)	scaffold_4:3076065-3077156(+) (11)	NA	NA	NA	AT2G33793.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g62160.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203898.1.S1_at	A	A1TS	POPTR_0004s04260	POPTR_0004s04260 (11)	scaffold_4:3051653-3053377(-) (11)	NA	Q6VBB2	Heat stress transcription factor A-2b	AT1G32330.1	heat shock transcription factor A1D 	LOC_Os07g08140.1	"heat stress transcription factor, putative, expressed"	AC233659_20.1	"Heat shock factor (HSF)-type, DNA-binding AC233659.1 90576-91538 H EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.203900.1.S1_at	A	A1TS	POPTR_0004s04240	POPTR_0004s04240 (10)	scaffold_4:3040911-3041207(-) (10)	NA	P35694	Brassinosteroid-regulated protein BRU1	AT3G23730.1	xyloglucan endotransglucosylase/hydrolase 16 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr3g104510.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203901.1.S1_at	A	A1TS	POPTR_0004s04190	POPTR_0004s04190 (11)	scaffold_4:3014987-3015117(+) (11)	NA	P32375	Allantoinase	AT4G04955.1	allantoinase 	LOC_Os04g58390.1	"allantoinase, putative, expressed"	Medtr2g014750.3	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.203902.1.S1_at	A	A1TS	POPTR_0004s04170	POPTR_0004s04170 (11)	scaffold_4:2994248-2996117(-) (11)	NA	P60027	General transcription factor IIH subunit 4	AT4G17020.1	transcription factor-related 	LOC_Os04g58350.1	"TFIIH basal transcription factor complex p52 subunit, putative, expressed"	Medtr3g097740.1	Transcription factor Tfb2 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0003702|RNA polymerase II transcription factor activity	GO:0005634|nucleus
PtpAffx.203903.1.S1_at	A	A1MS	POPTR_0004s04150	POPTR_0004s04150 (11)	scaffold_4:2981881-2982302(+) (11)	NA	Q6UQ04	Sphingolipid delta(4)-desaturase DES1	AT4G04930.1	fatty acid desaturase family protein 	LOC_Os02g42660.1	"sphingolipid delta desaturase, putative, expressed"	Medtr2g014760.1	Fatty acid desaturase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203904.1.S1_at	A	A1TS	POPTR_0004s04130	POPTR_0004s04130 (11)	scaffold_4:2965548-2966845(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g51500.1	expressed protein	Medtr8g119530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203905.1.S1_s_at	A	A2TS	POPTR_0004s03810	POPTR_0004s03810 (11)//POPTR_0004s04090 (10)	scaffold_4:2675935-2676483(-) (11)//scaffold_4:2930568-2931116(-) (10)	NA	Q96376	S-linalool synthase	AT1G61120.1	terpene synthase 04 	LOC_Os04g52230.1	"ent-kaurene synthase, chloroplast precursor, putative, expressed"	Medtr2g014530.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.203906.1.S1_at	A	A1TS	POPTR_0004s04080	POPTR_0004s04080 (10)	scaffold_4:2925654-2926745(-) (11)	NA	Q5Z9Z0	Beta-glucosidase 24	AT5G44640.1	beta glucosidase 13 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.203907.1.S1_at	A	A1TS	POPTR_0004s04060	POPTR_0004s04060 (10)	scaffold_4:2915448-2918065(+) (11)	NA	A8WX89	UPF0533 protein CBG04321	AT2G47960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378); Has 285 Blast hits to 284 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 68; Plants - 32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). 	LOC_Os10g35570.1	expressed protein	AC233659_17.1	"UPF0533 protein, related AC233659.1 71731-77893 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203909.1.S1_at	A	A1MS	POPTR_0004s04040	POPTR_0004s04040 (10)	scaffold_4:2893215-2893367(+) (10)	NA	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203910.1.S1_at	A	A1MS	POPTR_0004s10070	POPTR_0004s10070 (11)	scaffold_4:8617735-8618022(-) (11)	NA	Q9P2D3	HEAT repeat-containing protein 5B	AT1G67140.3	HEAT repeat-containing protein 	LOC_Os06g30901.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203911.1.S1_at	A	A1TS	POPTR_0004s10070	POPTR_0004s10070 (11)	scaffold_4:8611389-8613482(-) (11)	NA	Q9P2D3	HEAT repeat-containing protein 5B	AT1G67140.3	HEAT repeat-containing protein 	LOC_Os06g30901.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203912.1.S1_at	A	A1TS	POPTR_0004s10060	POPTR_0004s10060 (11)	scaffold_4:8605839-8607322(-) (11)	NA	NA	NA	AT1G67140.3	HEAT repeat-containing protein 	LOC_Os06g30901.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203913.1.S1_at	A	A1MS	POPTR_0004s10050	POPTR_0004s10050 (10)	scaffold_4:8591352-8593592(-) (10)	NA	A1A5F2	HEAT repeat-containing protein 5B	AT1G67140.1	HEAT repeat-containing protein 	LOC_Os06g30894.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203914.1.S1_at	A	A1TS	POPTR_0004s10030	POPTR_0004s10030 (11)	scaffold_4:8570951-8571209(-) (11)	NA	Q6PFP6	NADPH-dependent diflavin oxidoreductase 1	AT3G02280.1	Flavodoxin family protein 	LOC_Os01g53250.1	"NADPH reductase, putative, expressed"	Medtr7g121450.1	FAD-binding; Flavodoxin/nitric oxide synthase 	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.203915.1.S1_at	A	A1TS	POPTR_0004s10010	POPTR_0004s10010 (11)	scaffold_4:8548607-8549066(+) (11)	NA	Q54I39	IST1-like protein	AT1G13340.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os03g50210.1	"DUF292 domain containing protein, expressed"	Medtr1g140920.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203916.1.S1_at	A	A1TS	POPTR_0004s09960	POPTR_0004s09960 (11)	scaffold_4:8510166-8510742(-) (11)	NA	Q9FF17	"Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase"	AT5G38460.2	"ALG6, ALG8 glycosyltransferase family "	LOC_Os07g07010.1	"glucosyltransferase, putative, expressed"	Medtr5g085330.1	"ALG6, ALG8 glycosyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.203917.1.S1_at	A	A1TS	POPTR_0004s09940	POPTR_0004s09940 (11)	scaffold_4:8487735-8488261(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203919.1.S1_at	A	A1TS	POPTR_0004s09920	POPTR_0004s09920 (11)	scaffold_4:8451300-8451766(+) (11)	NA	Q9M886	LOB domain-containing protein 41	AT3G02550.1	LOB domain-containing protein 41 	LOC_Os01g32770.1	"DUF260 domain containing protein, putative, expressed"	Medtr6g020260.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203920.1.S1_at	A	A1TS	POPTR_0004s09900	POPTR_0004s09900 (11)	scaffold_4:8414889-8415448(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203921.1.S1_at	A	A1TS	POPTR_0004s09880	POPTR_0004s09880 (11)	scaffold_4:8385673-8386922(-) (11)	NA	NA	NA	AT5G16120.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g04620.1	"OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed"	AC233109_20.1	Alpha/beta hydrolase fold AC233109.4 76219-82338 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203922.1.S1_at	A	A1TS	POPTR_0004s09870	POPTR_0004s09870 (11)	scaffold_4:8384252-8384781(+) (11)	NA	O23659	B3 domain-containing protein At2g33720	AT2G33720.1	AP2/B3-like transcriptional factor family protein 	NA	NA	Medtr2g073930.1	transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.203923.1.S1_at	A	A1TS	POPTR_0004s09850	POPTR_0004s09850 (9)	scaffold_4:8372212-8373507(+) (11)	NA	Q8GWK7	Transcription factor BEE 3	AT1G73830.2	BR enhanced expression 3 	LOC_Os09g32510.5	"BHLH transcription factor, putative, expressed"	Medtr6g028080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.203924.1.S1_at	A	A1TS	POPTR_0004s09840	POPTR_0004s09840 (11)	scaffold_4:8353950-8357896(-) (11)	NA	NA	NA	AT5G38360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os04g31240.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	AC233109_25.1	Alpha/beta hydrolase fold AC233109.4 99536-103085 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203926.1.S1_at	A	A1TS	POPTR_0004s09790	POPTR_0004s09790 (11)	scaffold_4:8289963-8290405(-) (11)	NA	NA	NA	AT1G67050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). 	NA	NA	Medtr7g093370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203927.1.S1_at	A	A1TS	POPTR_0004s09770	POPTR_0004s09770 (11)	scaffold_4:8287145-8287466(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203928.1.S1_at	A	A1TS	POPTR_0004s09760	POPTR_0004s09760 (10)	scaffold_4:8279769-8280552(-) (10)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g11930.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g025900.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203929.1.S1_at	A	A1TS	POPTR_0004s09750	POPTR_0004s09750 (11)	scaffold_4:8264709-8265230(-) (11)	NA	NA	NA	AT1G67040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04160.1	expressed protein	Medtr7g093380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203930.1.S1_at	A	A1TS	POPTR_0004s09740	POPTR_0004s09740 (11)	scaffold_4:8257004-8257389(+) (11)	NA	NA	NA	AT5G38300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67035.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g093390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203931.1.S1_at	A	A1TS	POPTR_0004s09720	POPTR_0004s09720 (11)	scaffold_4:8243476-8244159(+) (11)	NA	NA	NA	AT2G27770.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr7g126660.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203932.1.S1_at	A	A1TS	POPTR_0004s09690	POPTR_0004s09690 (11)	scaffold_4:8207377-8207909(-) (11)	NA	NA	NA	AT5G16170.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g52120.1	"DNA binding protein, putative, expressed"	Medtr1g140570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.203933.1.S1_at	A	A1TS	POPTR_0004s09650	POPTR_0004s09650 (11)	scaffold_4:8159913-8160326(+) (11)	NA	NA	NA	AT5G16200.1	50S ribosomal protein-related 	NA	NA	Medtr7g093680.1	50S ribosomal protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203934.1.S1_at	A	A1TS	POPTR_0004s09640	POPTR_0004s09640 (10)	scaffold_4:8153996-8154681(+) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT5G38210.1	Protein kinase family protein 	LOC_Os01g49529.1	"OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.3	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203936.1.S1_at	A	A1TS	POPTR_0004s09580	POPTR_0004s09580 (9)	scaffold_4:8115652-8117678(+) (10)	POPTR_0004s09610 (6)	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G66880.1	Protein kinase superfamily protein 	LOC_Os01g49529.1	"OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203938.1.S1_s_at	A	A1TS	POPTR_0004s09535	POPTR_0004s09535 (11)	scaffold_4:8070172-8070210(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203940.1.S1_at	A	A1TS	POPTR_0004s09490	POPTR_0004s09490 (11)	scaffold_4:8018353-8018927(-) (11)	NA	Q9C9N6	Protein PLASTID MOVEMENT IMPAIRED 2	AT1G66840.1	Plant protein of unknown function (DUF827) 	LOC_Os01g49740.1	expressed protein	Medtr7g093840.1	"Protein PLASTID MOVEMENT IMPAIRED 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203941.1.S1_at	A	A1TS	POPTR_0004s09450	POPTR_0004s09450 (11)	scaffold_4:7988654-7989948(-) (11)	NA	Q8LFD1	"Putative lipid phosphate phosphatase 3, chloroplastic"	AT3G02600.1	lipid phosphate phosphatase 3 	LOC_Os08g27040.1	"lipid phosphatase protein, putative, expressed"	Medtr7g093870.1	"Phosphoesterase, PA-phosphatase related "	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.203942.1.S1_at	A	A1TS	POPTR_0004s09420	POPTR_0004s09420 (11)	scaffold_4:7970152-7970457(-) (11)	NA	Q9C9N3	Zinc finger CCCH domain-containing protein 14	AT1G66810.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203942.1.S1_s_at	A	A1TS	POPTR_0004s09420	POPTR_0004s09420 (11)	scaffold_4:7970487-7970787(-) (11)	NA	Q9C9N3	Zinc finger CCCH domain-containing protein 14	AT1G66810.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203944.1.S1_s_at	A	A3TS	POPTR_0004s09220	POPTR_0229s00230 (11)//POPTR_0004s09220 (11)//POPTR_0004s09380 (9)	scaffold_229:11821-12673(+) (11)//scaffold_4:7744636-7745497(-) (11)//scaffold_4:7910156-7911002(+) (9)//scaffold_793:1-10148(+) (9)	POPTR_0793s00200 (7)	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G71140.1	MATE efflux family protein 	LOC_Os05g48040.1	"MATE efflux family protein, putative, expressed"	Medtr7g094030.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.203945.1.S1_at	A	A1TS	POPTR_0004s09350	POPTR_0004s09350 (11)	scaffold_229:3117-3158(+) (11)//scaffold_4:7901857-7901898(+) (11)	NA	Q9LF46	2-hydroxyacyl-CoA lyase	AT5G17380.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os01g32080.1	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr3g150570.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.203946.1.S1_at	A	A1TS	POPTR_0004s09310	POPTR_0004s09310 (11)	scaffold_4:7862063-7862565(+) (11)	NA	Q42572	DNA ligase 1	AT1G66730.1	DNA LIGASE 6 	LOC_Os01g49180.1	"ATP dependent DNA ligase family protein, putative, expressed"	Medtr7g094090.1	"ATP-dependent DNA ligase; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003910|DNA ligase (ATP) activity||GO:0005524|ATP binding	NA
PtpAffx.203947.1.S1_s_at	A	A1TS	POPTR_0004s09290	POPTR_0004s09290 (11)	scaffold_4:7844437-7844965(+) (11)	NA	NA	NA	AT3G03280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g47960.1	expressed protein	Medtr1g137740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203948.1.S1_at	A	A1TS	POPTR_0004s09240	POPTR_0004s09240 (11)	scaffold_4:7778919-7781158(+) (11)	NA	NA	NA	AT2G01275.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g03100.2	"protein binding protein, putative, expressed"	Medtr1g137400.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203950.1.S1_at	A	A1TS	POPTR_0004s09180	POPTR_0004s09180 (11)	scaffold_4:7690461-7691418(+) (11)	NA	Q8RX28	Histone deacetylase 5	AT5G61060.1	histone deacetylase 5 	LOC_Os07g41090.1	"histone deacetylase, putative, expressed"	Medtr2g105140.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203951.1.S1_at	A	A1MA	POPTR_0004s09180	POPTR_0004s09180 (11)	scaffold_4:7685168-7685324(-) (11)	NA	Q8RX28	Histone deacetylase 5	AT5G61060.1	histone deacetylase 5 	LOC_Os07g41090.1	"histone deacetylase, putative, expressed"	Medtr2g105140.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203952.1.S1_at	A	A1TS	POPTR_0004s09170	POPTR_0004s09170 (11)	scaffold_4:7680003-7680284(-) (11)	NA	NA	NA	AT2G01300.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g03130.1	expressed protein	Medtr1g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203953.1.S1_at	A	A1TS	POPTR_0004s09160	POPTR_0004s09160 (11)	scaffold_4:7674882-7675475(+) (11)	NA	P48612	Protein pelota	AT4G27650.1	Eukaryotic release factor 1 (eRF1) family protein 	LOC_Os04g56480.1	"pelota, putative, expressed"	Medtr7g124490.1	Probable translation factor pelota 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203954.1.S1_at	A	A1TS	POPTR_0004s09110	POPTR_0004s09110 (11)	scaffold_4:7628756-7631255(+) (11)	NA	Q9SXJ6	"ATP-dependent Clp protease proteolytic subunit 3, chloroplastic"	AT1G66670.1	CLP protease proteolytic subunit 3 	LOC_Os01g32350.2	"OsClp2 - Putative Clp protease homologue, expressed"	Medtr7g094170.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.203955.1.S1_at	A	A1TS	POPTR_0004s09100	POPTR_0004s09100 (11)	scaffold_4:7622585-7623286(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203956.1.S1_at	A	A1TS	POPTR_0004s09090	POPTR_0004s09090 (11)	scaffold_4:7620116-7620704(-) (11)	NA	Q84K34	E3 ubiquitin-protein ligase SINA-like 10	AT5G37930.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os06g20610.1	"seven in absentia protein family domain containing protein, expressed"	AC235662_15.1	TRAF-like AC235662.1 70113-67206 E EGN_Mt090430 200	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.203957.1.S1_at	A	A1TS	POPTR_0004s09080	POPTR_0004s09080 (11)	scaffold_4:7614126-7614509(-) (11)	NA	Q84K34	E3 ubiquitin-protein ligase SINA-like 10	AT5G37930.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os09g23250.1	conserved hypothetical protein	Medtr5g084560.1	Ubiquitin; TRAF-like 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.203958.1.S1_at	A	A1TS	POPTR_0004s09070	POPTR_0004s09070 (11)	scaffold_4:7610907-7611454(-) (11)	NA	NA	NA	AT1G23000.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g03490.1	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.203959.1.S1_s_at	A	A2TS	POPTR_0004s09040	POPTR_0004s09051 (11)//POPTR_0004s09040 (11)	scaffold_4:7591614-7592178(-) (11)//scaffold_4:7596875-7597439(-) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.203960.1.S1_at	A	A1TS	POPTR_0004s09010	POPTR_0004s09010 (11)	scaffold_4:7568283-7568599(+) (11)	NA	Q9FIZ7	5-oxoprolinase	AT5G37830.1	oxoprolinase 1 	LOC_Os01g73514.1	"5-oxoprolinase, putative, expressed"	Medtr4g121000.1	"Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.203961.1.S1_at	A	A1TS	POPTR_0004s09000	POPTR_0004s09000 (11)	scaffold_4:7562027-7562616(+) (11)	NA	NA	NA	AT5G28040.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os03g50110.1	"transcription regulator, putative, expressed"	Medtr1g096530.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203962.1.S1_at	A	A1TS	POPTR_0004s08990	POPTR_0004s08990 (11)	scaffold_4:7557304-7557842(-) (11)	NA	Q3ECH5	"Pentatricopeptide repeat-containing protein At1g66345, mitochondrial"	AT1G66345.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g07610.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g112650.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203964.1.S1_at	A	A1TS	POPTR_0004s08970	POPTR_0004s08970 (11)	scaffold_4:7535472-7536041(-) (11)	NA	Q94ID7	"Geranylgeranyl pyrophosphate synthase, chloroplastic"	AT4G36810.1	geranylgeranyl pyrophosphate synthase 1 	LOC_Os01g14630.1	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.203965.1.S1_at	A	A1TS	POPTR_0004s08950	POPTR_0004s08950 (11)	scaffold_4:7513151-7515950(-) (11)	NA	Q8GW20	"Uncharacterized protein At5g03900, chloroplastic"	AT5G03900.2	Iron-sulphur cluster biosynthesis family protein 	LOC_Os02g33010.1	expressed protein	Medtr7g029720.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203966.1.S1_s_at	A	A1MS	POPTR_0004s08940	POPTR_0004s08940 (10)	scaffold_4:7506492-7506652(-) (11)	NA	Q14FB0	"NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic"	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203967.1.S1_at	A	A1TS	POPTR_0004s08920	POPTR_0004s08920 (11)	scaffold_4:7504389-7504860(+) (11)	NA	NA	NA	AT1G27700.1	Syntaxin/t-SNARE family protein 	LOC_Os05g37150.2	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr1g023580.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.203968.1.S1_at	A	A1TS	POPTR_0004s08910	POPTR_0004s08910 (11)	scaffold_4:7501742-7501987(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.203969.1.S1_at	A	A1TS	POPTR_0004s08810	POPTR_0004s08810 (11)	scaffold_4:7401639-7401863(-) (11)	NA	P58171	Polcalcin Syr v 3	AT3G03430.1	Calcium-binding EF-hand family protein 	LOC_Os08g44660.1	"EF hand family protein, putative, expressed"	Medtr5g086920.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203970.1.S1_at	A	A1MS	POPTR_0004s08780	POPTR_0004s08780 (10)	scaffold_4:7375528-7376621(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203970.1.S1_x_at	A	A1MS	POPTR_0004s08780	POPTR_0004s08780 (10)	scaffold_4:7375515-7376589(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203971.1.S1_at	A	A1TS	POPTR_0004s08770	POPTR_0004s08770 (11)	scaffold_4:7358265-7359271(-) (11)	NA	Q9FJ00	Putative transcription factor bHLH086	AT5G37800.1	RHD SIX-LIKE 1 	LOC_Os02g48060.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr5g086970.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.203972.1.S1_s_at	A	A1TS	POPTR_0004s08750	POPTR_0004s08750 (11)	scaffold_4:7331722-7332268(-) (11)	POPTR_0017s03070 (8)	Q5XEZ8	U-box domain-containing protein 2	AT3G03440.1	ARM repeat superfamily protein 	LOC_Os01g02200.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g087030.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203973.1.S1_at	A	A1TS	POPTR_0004s08740	POPTR_0004s08740 (11)	scaffold_4:7314552-7315999(-) (11)	NA	Q8RY22	Protease Do-like 7	AT3G03380.1	DegP protease 7 	LOC_Os02g48180.1	"OsDegp2 - Putative Deg protease homologue, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.203976.1.S1_at	A	A1TS	POPTR_0004s08700	POPTR_0004s08700 (11)	scaffold_4:7261509-7261939(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203978.1.S1_at	A	A1TS	POPTR_0004s08610	POPTR_0004s08610 (11)	scaffold_4:7161907-7162782(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203979.1.S1_s_at	A	A1TS	POPTR_0004s08580	POPTR_0004s08580 (11)	scaffold_4:7139192-7140174(+) (11)	NA	Q01831	DNA repair protein complementing XP-C cells	AT5G16630.2	DNA repair protein Rad4 family 	LOC_Os08g33082.1	"DNA-repair protein complementing XP-C cells, putative, expressed"	Medtr5g086100.1	DNA repair protein Rad4 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.203980.1.S1_at	A	A1TS	POPTR_0004s08530	POPTR_0004s08530 (9)	scaffold_4:7108765-7110457(+) (10)	NA	NA	NA	AT5G37710.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.203981.1.S1_at	A	A1TS	POPTR_0004s08520	POPTR_0004s08520 (11)	scaffold_4:7098882-7099504(-) (11)	NA	Q9FHQ1	GDSL esterase/lipase At5g37690	AT5G37690.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os06g14630.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g085940.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.203982.1.S1_at	A	A1TS	POPTR_0004s08490	POPTR_0004s08490 (11)	scaffold_4:7089877-7089912(+) (11)	NA	Q9C7U5	"Glucan endo-1,3-beta-glucosidase 2"	AT1G66250.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g085920.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.203982.1.S1_s_at	A	A1TS	POPTR_0004s08490	POPTR_0004s08490 (11)	scaffold_4:7089193-7089865(+) (11)	NA	Q9C7U5	"Glucan endo-1,3-beta-glucosidase 2"	AT1G66250.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g085920.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.203983.1.S1_at	A	A1TS	POPTR_0004s08440	POPTR_0004s08440 (11)	scaffold_4:6974067-6974194(+) (11)	NA	Q0WPN8	Cysteine-rich repeat secretory protein 60	AT5G37660.2	plasmodesmata-located protein 7 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr5g085800.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203983.1.S1_s_at	A	A1TS	POPTR_0004s08440	POPTR_0004s08440 (11)	scaffold_4:6973770-6974165(+) (11)	NA	Q0WPN8	Cysteine-rich repeat secretory protein 60	AT5G37660.2	plasmodesmata-located protein 7 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr5g085800.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203984.1.S1_s_at	A	A2TS	POPTR_0004s08430	POPTR_0004s08430 (11)//POPTR_0004s12140 (11)	scaffold_4:6966382-6967610(-) (11)//scaffold_4:11067871-11069095(+) (11)	NA	Q8BKC5	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.1	"HEAT repeat family protein, putative, expressed"	Medtr7g102560.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203985.1.S1_at	A	A2TS	POPTR_0004s08420	POPTR_0004s08420 (11)//POPTR_0004s12150 (10)	scaffold_4:6961716-6962906(-) (11)//scaffold_4:11072346-11073846(+) (10)//scaffold_4:11072644-11072742(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203985.1.S1_s_at	A	A2TS	POPTR_0004s08420	POPTR_0004s08420 (11)//POPTR_0004s12150 (11)	scaffold_4:6961093-6961719(-) (11)//scaffold_4:11073841-11074466(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203986.1.S1_at	A	A1TS	POPTR_0004s08360	POPTR_0004s08360 (11)	scaffold_4:6892028-6895234(-) (11)	NA	Q9NSK0	Kinesin light chain 4	AT5G37590.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr3g087380.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203987.1.S1_x_at	A	A1TS	POPTR_0004s08330	POPTR_0004s08330 (11)	scaffold_4:6848248-6848675(+) (11)	NA	O04086	Probable receptor-like protein kinase At1g11050	AT1G11050.1	Protein kinase superfamily protein 	LOC_Os05g34950.1	"cysteine-rich receptor-like protein kinase 6 precursor, putative, expressed"	Medtr2g006980.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203988.1.S1_at	A	A1TS	POPTR_0004s08310	POPTR_0004s08310 (11)	scaffold_4:6833895-6834003(-) (11)	NA	NA	NA	AT4G35540.1	zinc ion binding;transcription regulators 	LOC_Os08g42020.2	"zinc ion binding protein, putative, expressed"	AC147501_17.1	Cyclin-like AC147501.9 57146-55353 E EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0008270|zinc ion binding	NA
PtpAffx.203988.1.S1_s_at	A	A1TS	POPTR_0004s08310	POPTR_0004s08310 (11)	scaffold_4:6834048-6834469(-) (11)	NA	NA	NA	AT4G35540.1	zinc ion binding;transcription regulators 	LOC_Os08g42020.2	"zinc ion binding protein, putative, expressed"	AC147501_17.1	Cyclin-like AC147501.9 57146-55353 E EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0008270|zinc ion binding	NA
PtpAffx.203989.1.S1_at	A	A1TS	POPTR_0004s08300	POPTR_0004s08300 (11)	scaffold_4:6830353-6830560(+) (11)	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os01g46390.1	"DUF538 domain containing protein, putative"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203989.1.S1_x_at	A	A1TS	POPTR_0004s08300	POPTR_0004s08300 (11)	scaffold_4:6830353-6830597(+) (11)	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os01g46390.1	"DUF538 domain containing protein, putative"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203990.1.S1_at	A	A2TS	POPTR_0004s08280	POPTR_0004s08290 (11)//POPTR_0004s08280 (11)	scaffold_4:6815441-6816496(-) (11)//scaffold_4:6825352-6826424(+) (11)	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.203991.1.S1_at	A	A1TS	POPTR_0004s08210	POPTR_0004s08210 (11)	scaffold_4:6720477-6721065(-) (11)	NA	NA	NA	AT4G01240.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g36710.1	methyltransferase domain containing protein	Medtr5g085490.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.203992.1.S1_at	A	A1TS	POPTR_0004s08200	POPTR_0004s08200 (11)	scaffold_4:6709957-6710493(-) (11)	NA	Q0WW21	Anthocyanin 5-O-glucosyltransferase	AT4G14090.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203993.1.S1_at	A	A1TS	POPTR_0004s08190	POPTR_0004s08190 (11)	scaffold_4:6708201-6708437(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g085540.1	"Calcium-binding EF-hand; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203995.1.S1_at	A	A1TS	POPTR_0004s08170	POPTR_0004s08170 (11)	scaffold_4:6690794-6692381(+) (11)	NA	Q9M8S6	Potassium channel SKOR	AT3G02850.1	STELAR K+ outward rectifier 	LOC_Os06g14030.1	"potassium channel SKOR, putative, expressed"	Medtr5g085570.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.203996.1.S1_at	A	A1TS	POPTR_0004s08150	POPTR_0004s08150 (11)	scaffold_4:6665830-6667179(-) (11)	NA	O04847	Deacetoxyvindoline 4-hydroxylase	AT1G04350.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.203997.1.S1_at	A	A1TS	POPTR_0004s08120	POPTR_0004s08120 (11)	scaffold_4:6643825-6644740(-) (11)	NA	Q8GUM5	Nicastrin	AT3G52640.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os02g50360.1	"nicalin, putative, expressed"	Medtr3g087260.1	Nicastrin 	GO:0016485|protein processing	NA	GO:0016021|integral to membrane
PtpAffx.203998.1.S1_at	A	A1TS	POPTR_0004s08100	POPTR_0004s08100 (11)	scaffold_4:6627404-6627869(+) (11)//scaffold_4:11063168-11063383(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204000.1.S1_at	A	A3MS	POPTR_0004s08090	POPTR_0004s08090 (11)//POPTR_0004s08430 (11)//POPTR_0004s12140 (11)	scaffold_4:6620617-6620676(-) (11)//scaffold_4:6967768-6967827(-) (11)//scaffold_4:11067652-11067711(+) (11)	NA	Q8BKC5	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204000.1.S1_s_at	A	A2TS	POPTR_0004s08090	POPTR_0004s08090 (11)//POPTR_0004s12140 (11)	scaffold_4:6620863-6621553(-) (11)//scaffold_4:11066775-11067465(+) (11)	NA	Q8BKC5	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204001.1.S1_at	A	A1TS	POPTR_0004s08080	POPTR_0004s08080 (11)	scaffold_4:6605097-6605639(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204005.1.S1_at	A	A1TS	POPTR_0004s07980	POPTR_0004s07980 (11)	scaffold_4:6532149-6532741(-) (11)	NA	O04567	Probable inactive receptor kinase At1g27190	AT1G27190.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g41030.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr6g010010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.204006.1.S1_s_at	A	A1TS	POPTR_0004s07970	POPTR_0004s07970 (11)	scaffold_4:6527094-6527307(+) (11)//scaffold_4:6763835-6764042(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204010.1.S1_at	A	A1TS	POPTR_0004s07910	POPTR_0004s07910 (11)	scaffold_4:6489380-6489924(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT1G65910.1	NAC domain containing protein 28 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr3g086750.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204011.1.S1_at	A	A1TS	POPTR_0004s07910	POPTR_0004s07910 (11)	scaffold_4:6486335-6487747(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT1G65910.1	NAC domain containing protein 28 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr3g086750.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204011.1.S1_s_at	A	A2TS	POPTR_0004s07910	POPTR_0017s02020 (11)//POPTR_0004s07910 (11)	scaffold_17:1481374-1482574(+) (11)//scaffold_4:6486360-6487612(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT1G65910.1	NAC domain containing protein 28 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr3g086750.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204011.1.S1_x_at	A	A1TS	POPTR_0004s07910	POPTR_0004s07910 (11)	scaffold_4:6486313-6487813(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT1G65910.1	NAC domain containing protein 28 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr3g086750.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204012.1.S1_at	A	A1TS	POPTR_0004s07830	POPTR_0004s07830 (10)	scaffold_4:6417742-6418384(+) (10)	NA	NA	NA	AT3G17380.1	TRAF-like family protein 	NA	NA	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204013.1.S1_at	A	A1TS	POPTR_0004s07760	POPTR_0004s07760 (11)	scaffold_4:6382221-6382696(-) (11)	NA	Q6PBM8	Probable RNA-binding protein 18	AT5G52545.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g39010.5	"TKL_IRAK_CrRLK1L-1.16 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092300.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.204014.1.S1_at	A	A1TS	POPTR_0004s07740	POPTR_0004s07740 (11)	scaffold_4:6362216-6362758(-) (11)	NA	Q9XYS3	Superoxide-generating NADPH oxidase heavy chain subunit A	AT5G23980.1	ferric reduction oxidase 4 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.204015.1.S1_at	A	A1TS	POPTR_0004s07730	POPTR_0004s07730 (11)	scaffold_4:6355043-6355712(-) (11)	NA	Q9XYS3	Superoxide-generating NADPH oxidase heavy chain subunit A	AT1G01580.1	ferric reduction oxidase 2 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.204016.1.S1_at	A	A1TS	POPTR_0004s07720	POPTR_0004s07720 (11)	scaffold_4:6352087-6352440(+) (11)	NA	NA	NA	AT5G52530.3	dentin sialophosphoprotein-related 	LOC_Os08g33320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204017.1.S1_at	A	A1TS	POPTR_0004s07710	POPTR_0004s07710 (11)	scaffold_4:6339347-6341242(+) (11)	NA	B3QYP1	Prolyl-tRNA synthetase	AT5G52520.1	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os07g07060.1	"prolyl-tRNA synthetase, putative, expressed"	Medtr3g148790.1	"tRNA synthetase, class II (G, H, P and S) "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.204018.1.S1_a_at	A	A1TS	POPTR_0004s07680	POPTR_0004s07680 (9)	scaffold_4:6297451-6297487(+) (11)//scaffold_4:6297513-6297549(+) (11)	NA	NA	NA	AT3G02700.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204019.1.S1_at	A	A1TS	POPTR_0004s07640	POPTR_0004s07640 (11)	scaffold_4:6274540-6274742(+) (11)	NA	Q9FGV1	Auxin response factor 8	AT5G37020.1	auxin response factor 8 	LOC_Os04g57610.1	"auxin response factor, putative, expressed"	Medtr5g084140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.20402.2.A1_s_at	A	A1TS	POPTR_0010s16680	POPTR_0010s16680 (11)	scaffold_10:15553904-15554328(-) (11)	NA	Q9C5W6	14-3-3-like protein GF14 iota	AT1G26480.1	general regulatory factor 12 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr5g046960.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.204020.1.S1_at	A	A1TS	POPTR_0004s07610	POPTR_0004s07610 (11)	scaffold_4:6252423-6253163(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g062580.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204021.1.S1_at	A	A1TS	POPTR_0004s07600	POPTR_0004s07600 (11)	scaffold_4:6243250-6245117(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT1G65780.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g49270.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204022.1.S1_s_at	A	A3TS	POPTR_0004s07510	POPTR_0004s07510 (9)//POPTR_0004s07590 (9)//POPTR_0004s07580 (9)	scaffold_4:6185597-6185659(-) (9)//scaffold_4:6230098-6230160(-) (9)//scaffold_4:6237339-6237401(-) (9)	NA	Q00416	Helicase SEN1	AT1G65780.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g49270.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204024.1.S1_at	A	A1TS	POPTR_0004s07550	POPTR_0004s07550 (11)	scaffold_4:6182310-6182666(+) (11)//scaffold_4:6204797-6205153(+) (11)	POPTR_0004s07500 (7)	NA	NA	AT5G02520.1	CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). 	LOC_Os01g34610.1	expressed protein	Medtr5g040960.1	SANT associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204025.1.S1_at	A	A1TS	POPTR_0004s07540	POPTR_0004s07540 (11)	scaffold_4:6202657-6203219(-) (11)//scaffold_4:6251988-6252553(+) (9)	NA	Q5EAF6	Probable F-box protein At5g04010	AT5G04010.1	F-box family protein 	LOC_Os01g58670.1	conserved hypothetical protein	Medtr1g062580.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204026.1.S1_at	A	A1TS	POPTR_0004s07530	POPTR_0004s07530 (9)	scaffold_4:6197849-6198175(+) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g108380.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204028.1.S1_at	A	A1TS	POPTR_0004s07370	POPTR_0004s07370 (11)	scaffold_4:6076967-6077616(+) (11)	NA	Q42521	Glutamate decarboxylase 1	AT5G17330.1	glutamate decarboxylase 	LOC_Os03g51080.1	"glutamate decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.204029.1.S1_at	A	A1TS	POPTR_0004s07340	POPTR_0004s07340 (11)	scaffold_4:6056918-6059205(-) (11)	NA	Q5ZMT7	Uncharacterized aarF domain-containing protein kinase 1	AT1G65950.1	Protein kinase superfamily protein 	LOC_Os11g34750.1	"ABC1 family domain containing protein, putative, expressed"	Medtr5g084940.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204030.1.S1_at	A	A1TS	POPTR_0004s07310	POPTR_0004s07310 (11)	scaffold_4:6036720-6037547(-) (11)	NA	Q69T58	Homeobox-leucine zipper protein ROC8	AT1G73360.1	homeodomain GLABROUS 11 	LOC_Os06g10600.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g130090.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.204031.1.S1_at	A	A1TS	POPTR_0004s07260	POPTR_0004s07260 (11)	scaffold_4:5981773-5982071(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204032.1.S1_at	A	A1TS	POPTR_0004s07240	POPTR_0004s07240 (11)	scaffold_4:5976553-5976727(-) (11)	NA	Q66GI4	"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial"	AT2G32230.1	proteinaceous RNase P 1 	LOC_Os02g17360.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g122420.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204033.1.S1_at	A	A1TS	POPTR_0004s07220	POPTR_0004s07220 (11)	scaffold_4:5959524-5960030(-) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G48950.1	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr1g126440.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.204035.1.S1_at	A	A1TS	POPTR_0004s07180	POPTR_0004s07180 (9)	scaffold_4:5944329-5944864(+) (11)	NA	Q9SW09	40S ribosomal protein S10-1	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.2	"Plectin/S10, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204035.1.S1_x_at	A	A1TS	POPTR_0004s07180	POPTR_0004s07180 (10)	scaffold_4:5944329-5944863(+) (11)	NA	Q9SW09	40S ribosomal protein S10-1	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.2	"Plectin/S10, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204036.1.S1_at	A	A1TS	POPTR_0004s07170	POPTR_0004s07170 (11)	scaffold_4:5937924-5938628(-) (11)	NA	NA	NA	AT4G01290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1744 Blast hits to 1308 proteins in 219 species: Archae - 0; Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink). 	LOC_Os06g01680.4	expressed protein	Medtr7g088510.1	ABC transporter related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204038.1.S1_at	A	A1TS	POPTR_0004s07100	POPTR_0004s07100 (11)	scaffold_4:5894134-5894585(-) (11)	NA	Q9HDZ0	Uncharacterized protein P11E10.01	AT5G52810.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g38930.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr1g126410.1	"Aconitate hydratase, N-terminal; Ornithine cyclodeaminase/mu-crystallin "	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.204039.1.S1_at	A	A1TS	POPTR_0004s07090	POPTR_0004s07090 (11)	scaffold_4:5891875-5892799(+) (11)	NA	Q0WMN5	Uncharacterized protein At3g49135	AT5G24060.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g34130.1	expressed protein	Medtr6g062650.1	"binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204039.1.S1_s_at	A	A1TS	POPTR_0004s07090	POPTR_0004s07090 (11)	scaffold_4:5892748-5893432(+) (11)	NA	Q0WMN5	Uncharacterized protein At3g49135	AT5G24060.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g34130.1	expressed protein	Medtr6g062650.1	"binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204040.1.S1_at	A	A1TS	POPTR_0004s07080	POPTR_0004s07080 (11)	scaffold_4:5885413-5885665(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204041.1.S1_at	A	A1TS	POPTR_0004s07030	POPTR_0004s07030 (11)	scaffold_4:5852064-5852591(+) (11)	NA	Q9FLX6	"Pentatricopeptide repeat-containing protein At5g52850, chloroplastic"	AT5G52850.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g64370.1	"pentatricopeptide, putative"	Medtr1g126340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204042.1.S1_s_at	A	A1TS	POPTR_0004s07020	POPTR_0004s07020 (11)	scaffold_4:5844957-5845464(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204045.1.S1_s_at	A	A1TS	POPTR_0004s06880	POPTR_0004s06880 (11)	scaffold_4:5593607-5594213(+) (11)//scaffold_4:5831696-5832297(-) (10)	NA	Q96HI0	Sentrin-specific protease 5	AT4G15880.1	Cysteine proteinases superfamily protein 	LOC_Os03g22400.1	"ulp1 protease family protein, putative, expressed"	Medtr8g138660.1	"Intermediate filament protein; Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.204046.1.S1_at	A	A1TS	POPTR_0004s06900	POPTR_0004s06900 (11)	scaffold_4:5629688-5630244(+) (11)	NA	Q9M1B0	Protein NLP9	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0003677|DNA binding	NA
PtpAffx.204047.1.S1_at	A	A1TS	POPTR_0004s06990	POPTR_0004s06990 (11)	scaffold_4:5827896-5828351(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204049.1.S1_s_at	A	A7TS	POPTR_0004s06820	POPTR_0004s06930 (11)//POPTR_0004s06920 (11)//POPTR_0004s06970 (11)//POPTR_0004s06840 (11)//POPTR_0004s06981 (11)//POPTR_0004s06820 (11)//POPTR_0004s06910 (10)	scaffold_4:5451309-5451743(-) (11)//scaffold_4:5464897-5465331(-) (11)//scaffold_4:5669857-5670291(+) (10)//scaffold_4:5704277-5704711(+) (11)//scaffold_4:5755098-5755532(-) (11)//scaffold_4:5793556-5793990(-) (11)//scaffold_4:5804448-5804882(-) (11)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204051.1.S1_s_at	A	A2MS	POPTR_0011s07960	POPTR_0726s00210 (9)//POPTR_0011s07960 (9)	scaffold_11:8932381-8932625(-) (9)//scaffold_726:4706-4950(+) (9)	POPTR_0039s00290 (8)	NA	NA	AT5G24490.1	"30S ribosomal protein, putative "	LOC_Os03g63950.1	"plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed"	Medtr3g122720.1	Sigma 54 modulation protein/ribosomal protein S30EA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204053.1.S1_x_at	A	A1TS	POPTR_0004s10180	POPTR_0004s10180 (11)	scaffold_4:8752520-8756545(+) (11)	NA	Q55403	Thylakoid membrane protein slr0575	AT5G38660.1	acclimation of photosynthesis to  environment 	LOC_Os08g27010.1	"APE1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204054.1.S1_at	A	A1TS	POPTR_0004s10220	POPTR_0004s10220 (11)	scaffold_4:8786238-8789292(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g49930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204055.1.S1_at	A	A1TS	POPTR_0004s10260	POPTR_0004s10260 (11)	scaffold_4:8807951-8808429(+) (11)	NA	Q9SSR6	"Pentatricopeptide repeat-containing protein At1g52640, mitochondrial"	AT1G52640.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g55340.1	"pentatricopeptide, putative, expressed"	Medtr4g159670.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204056.1.S1_at	A	A1TS	POPTR_0004s10270	POPTR_0004s10270 (11)	scaffold_4:8809970-8810096(-) (11)	NA	NA	NA	AT5G61340.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g38810.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204056.1.S1_s_at	A	A1TS	POPTR_0004s10270	POPTR_0004s10270 (11)	scaffold_4:8810044-8810391(-) (11)	NA	NA	NA	AT5G61340.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g38810.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204057.1.S1_at	A	A1TS	POPTR_0004s10370	POPTR_0004s10370 (11)	scaffold_4:8905856-8906098(-) (11)	NA	NA	NA	AT3G21630.1	chitin elicitor receptor kinase 1 	NA	NA	Medtr5g093340.1	"LysM domain-containing receptor-like kinase 7, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204059.1.S1_at	A	A1TS	POPTR_0004s10390	POPTR_0004s10390 (11)	scaffold_4:8937064-8937884(-) (11)	NA	Q9C5X9	Histone acetyltransferase HAC1	AT1G79000.2	histone acetyltransferase of the CBP family 1 	LOC_Os02g04490.1	"histone acetyltransferase HAC1, putative, expressed"	Medtr4g163230.1	"Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.204059.1.S1_s_at	A	A1TS	POPTR_0004s10390	POPTR_0004s10390 (11)	scaffold_4:8936399-8937073(-) (11)	NA	Q9C5X9	Histone acetyltransferase HAC1	AT1G79000.2	histone acetyltransferase of the CBP family 1 	LOC_Os02g04490.1	"histone acetyltransferase HAC1, putative, expressed"	Medtr4g163230.1	"Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.204060.1.S1_at	A	A1TS	POPTR_0004s10420	POPTR_0004s10420 (11)	scaffold_4:8963501-8963962(-) (11)	NA	NA	NA	AT5G16020.1	gamete-expressed 3 	LOC_Os01g42060.1	expressed protein	AC233657_31.1	Quinonprotein alcohol dehydrogenase-like AC233657.1 165590-161894 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204062.1.S1_at	A	A1TS	POPTR_0004s10470	POPTR_0004s10470 (11)	scaffold_4:9020314-9021347(-) (11)	NA	P51110	Dihydroflavonol-4-reductase	AT5G14700.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g45200.1	"cinnamoyl-CoA reductase-related, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204063.1.S1_at	A	A1TS	POPTR_0004s10480	POPTR_0004s10480 (11)	scaffold_4:9022437-9022783(-) (11)	NA	NA	NA	AT5G04610.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204064.1.S1_at	A	A1TS	POPTR_0004s10530	POPTR_0004s10530 (11)	scaffold_4:9062505-9062831(-) (11)	NA	NA	NA	AT5G15900.1	TRICHOME BIREFRINGENCE-LIKE 19 	LOC_Os06g16170.1	expressed protein	Medtr5g036370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204065.1.S1_at	A	A1TS	POPTR_0004s10540	POPTR_0004s10540 (11)	scaffold_4:9071725-9072202(-) (11)	NA	NA	NA	AT5G15900.1	TRICHOME BIREFRINGENCE-LIKE 19 	LOC_Os01g46400.1	expressed protein	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204066.1.S1_at	A	A1TS	POPTR_0004s10570	POPTR_0004s10570 (11)	scaffold_4:9105619-9106186(-) (11)	NA	NA	NA	AT1G61600.1	Protein of unknown function (DUF1262) 	LOC_Os08g31880.1	conserved hypothetical protein	Medtr5g036800.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204068.1.S1_at	A	A1TS	POPTR_0004s10620	POPTR_0004s10620 (11)	scaffold_4:9146185-9147433(-) (11)	NA	D1CDT8	ATP-dependent zinc metalloprotease FtsH	AT3G02450.1	"cell division protein ftsH, putative "	LOC_Os04g39190.1	"cell division protease ftsH homolog 4, putative, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.204069.1.S1_at	A	A1TS	POPTR_0004s10670	POPTR_0004s10670 (11)	scaffold_4:9185252-9185816(-) (11)	NA	NA	NA	AT5G38720.1	unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). 	LOC_Os02g49620.1	expressed protein	Medtr4g134160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204069.1.S1_x_at	A	A1TS	POPTR_0004s10670	POPTR_0004s10670 (11)	scaffold_4:9184189-9185816(-) (11)	NA	NA	NA	AT5G38720.1	unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). 	LOC_Os02g49620.1	expressed protein	Medtr4g134160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204070.1.S1_at	A	A1TS	POPTR_0004s10720	POPTR_0004s10720 (11)	scaffold_4:9228501-9229005(-) (11)//scaffold_4:9242520-9243024(-) (11)	NA	NA	NA	AT5G62380.1	NAC-domain protein 101 	NA	NA	Medtr7g143100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204070.1.S1_s_at	A	A3TS	POPTR_0004s10700	POPTR_0005s08440 (11)//POPTR_0004s10700 (11)//POPTR_0004s10720 (11)	scaffold_4:9228557-9229042(-) (11)//scaffold_4:9242576-9243061(-) (11)//scaffold_5:5830379-5830864(+) (11)	NA	NA	NA	AT5G62380.1	NAC-domain protein 101 	NA	NA	Medtr1g065520.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204071.1.S1_s_at	A	A1TS	POPTR_0004s10780	POPTR_0004s10780 (11)	scaffold_4:9320681-9321066(+) (11)	NA	Q9M891	"Pentatricopeptide repeat-containing protein At3g02490, mitochondrial"	AT3G02490.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g73950.2	"PPR repeat containing protein, expressed"	Medtr5g099370.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204072.1.S1_at	A	A1TS	POPTR_0004s10780	POPTR_0004s10780 (11)	scaffold_4:9321056-9321108(+) (11)	NA	Q9M891	"Pentatricopeptide repeat-containing protein At3g02490, mitochondrial"	AT3G02490.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g73950.2	"PPR repeat containing protein, expressed"	Medtr5g099370.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204073.1.S1_at	A	A1MS	POPTR_0004s10820	POPTR_0004s10820 (11)	scaffold_4:9393402-9393701(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204074.1.S1_at	A	A1TS	POPTR_0004s10850	POPTR_0004s10850 (11)	scaffold_4:9429666-9429980(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204075.1.S1_s_at	A	A6TS	POPTR_0001s23050	POPTR_0001s23050 (11)//POPTR_0001s23070 (11)//POPTR_0004s10900 (11)//POPTR_0019s02590 (11)//POPTR_0004s18990 (11)//POPTR_0001s23080 (11)	scaffold_1:22133599-22133886(-) (11)//scaffold_1:22173473-22173719(-) (11)//scaffold_1:22206793-22207056(-) (11)//scaffold_19:2348278-2348561(-) (11)//scaffold_4:9478000-9478282(+) (11)//scaffold_4:18851478-18851760(+) (11)	NA	Q7XKV4	Beta-glucosidase 12	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39864.4	"Os4bglu11 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204076.1.S1_at	A	A3TS	POPTR_0004s10150	POPTR_0004s10910 (10)//POPTR_0004s10160 (10)//POPTR_0004s10150 (10)	scaffold_4:8711078-8711652(+) (10)//scaffold_4:8724692-8725266(+) (10)//scaffold_4:9485776-9486356(-) (10)	NA	P23586	Sugar transport protein 1	AT1G11260.1	sugar transporter 1 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr5g044750.1	Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.204077.1.S1_s_at	A	A3TS	POPTR_0004s10910	POPTR_0004s10910 (11)//POPTR_0004s10160 (9)//POPTR_0004s10150 (9)	scaffold_4:8710565-8711003(+) (9)//scaffold_4:8724179-8724617(+) (9)//scaffold_4:9486429-9486867(-) (11)	NA	P23586	Sugar transport protein 1	AT1G11260.1	sugar transporter 1 	LOC_Os01g38680.1	"transporter family protein, putative, expressed"	Medtr5g044750.1	Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.204078.1.S1_at	A	A1MS	POPTR_0004s19050	POPTR_0004s19050 (11)	scaffold_4:18949364-18950868(+) (11)	NA	Q9FH03	Beta-glucosidase 12	AT5G42260.1	beta glucosidase 12 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr4g024200.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204078.1.S1_s_at	A	A7TS	POPTR_0001s23050	POPTR_0001s23050 (11)//POPTR_0001s23070 (11)//POPTR_0004s10900 (11)//POPTR_0001s23080 (11)//POPTR_0019s02590 (10)//POPTR_0004s19050 (9)//POPTR_0004s18990 (9)	scaffold_1:22133238-22134055(-) (10)//scaffold_1:22173103-22173888(-) (10)//scaffold_1:22206423-22207225(-) (10)//scaffold_19:2347895-2348730(-) (9)//scaffold_4:9477827-9478664(+) (11)//scaffold_4:18851305-18851944(+) (10)//scaffold_4:18949322-18951096(+) (10)	NA	Q7XKV4	Beta-glucosidase 12	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39864.4	"Os4bglu11 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204080.1.S1_s_at	A	A2TS	POPTR_0004s13320	POPTR_0004s13320 (11)//POPTR_0014s04700 (11)	scaffold_14:3605836-3605992(-) (11)//scaffold_4:12921965-12922115(+) (11)	NA	Q948R1	"Phospholipase A(1) DAD1, chloroplastic"	AT2G44810.1	alpha/beta-Hydrolases superfamily protein 	NA	NA	Medtr7g093240.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204083.1.S1_at	A	A1TS	POPTR_0004s13370	POPTR_0004s13370 (11)	scaffold_4:13100689-13101322(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g103360.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204084.1.S1_at	A	A1TS	POPTR_0004s13390	POPTR_0004s13390 (11)	scaffold_4:13270087-13270925(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204085.1.S1_s_at	A	A1TS	POPTR_0004s13410	POPTR_0004s13410 (11)	scaffold_4:13451000-13451399(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204087.1.S1_at	A	A1TS	POPTR_0004s13430	POPTR_0004s13430 (11)	scaffold_4:13471857-13473042(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204089.1.S1_at	A	A1TS	POPTR_0004s13460	POPTR_0004s13460 (11)	scaffold_4:13557395-13557948(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204090.1.S1_at	A	A1TS	POPTR_0004s13510	POPTR_0004s13510 (11)	scaffold_4:13756281-13757671(-) (11)	NA	Q795R8	Uncharacterized protein ytfP	AT5G39940.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os12g44160.2	"oxidoreductase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204091.1.S1_at	A	A1TS	POPTR_0004s13520	POPTR_0004s13520 (11)	scaffold_4:13794133-13794537(-) (11)	NA	NA	NA	AT1G27100.1	Actin cross-linking protein 	LOC_Os03g58740.1	expressed protein	Medtr5g038610.1	Cytosolic fatty-acid binding; Actin-crosslinking proteins 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204094.1.S1_at	A	A1TS	POPTR_0004s13580	POPTR_0004s13580 (11)	scaffold_4:13905844-13905962(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr8g078000.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204094.1.S1_x_at	A	A1TS	POPTR_0004s13580	POPTR_0004s13580 (11)	scaffold_4:13905844-13906005(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr8g078000.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204096.1.S1_at	A	A1TS	POPTR_0004s13600	POPTR_0004s13600 (11)	scaffold_4:13937716-13938187(+) (11)	NA	Q4PSU4	Agamous-like MADS-box protein AGL61	AT2G34440.1	AGAMOUS-like 29 	LOC_Os09g02830.1	OsMADS78 - MADS-box family gene with M-alpha type-box	Medtr8g145590.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.204097.1.S1_at	A	A1TS	POPTR_0004s13620	POPTR_0004s13620 (11)	scaffold_4:13978340-13979928(-) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr4g142890.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.204099.1.S1_at	A	A1TS	POPTR_0004s13670	POPTR_0004s13670 (11)	scaffold_4:14058903-14059456(-) (11)	NA	Q55EK2	Probable cytochrome P450 524A1	AT2G34500.1	"cytochrome P450, family 710, subfamily A, polypeptide 1 "	LOC_Os01g11340.1	"cytochrome P450, putative, expressed"	Medtr2g024840.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.204100.1.S1_at	A	A1TS	POPTR_0004s13700	POPTR_0004s13700 (11)	scaffold_4:14118150-14120545(+) (11)	NA	Q03958	Prefoldin subunit 6	AT1G29990.1	prefoldin 6 	LOC_Os02g14860.1	"prefoldin subunit, putative, expressed"	Medtr5g067860.1	Prefoldin beta-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.204100.1.S1_x_at	A	A1TS	POPTR_0004s13700	POPTR_0004s13700 (11)	scaffold_4:14117829-14120545(+) (11)	NA	Q03958	Prefoldin subunit 6	AT1G29990.1	prefoldin 6 	LOC_Os02g14860.1	"prefoldin subunit, putative, expressed"	Medtr5g067860.1	Prefoldin beta-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.204105.1.S1_at	A	A1TS	POPTR_0004s13950	POPTR_0004s13950 (11)	scaffold_4:14364792-14366606(+) (11)	NA	Q8RWT0	Lupeol synthase 2	AT1G78960.1	lupeol synthase 2 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.204106.1.S1_at	A	A1TS	POPTR_0004s13960	POPTR_0004s13960 (11)	scaffold_4:14370402-14371243(-) (11)	NA	NA	NA	AT2G34580.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Herpesvirus UL139, cytomegalovirus (InterPro:IPR021042); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	NA	NA	Medtr4g114090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204107.1.S1_at	A	A1TS	POPTR_0004s13980	POPTR_0004s13980 (11)	scaffold_4:14405523-14405976(-) (11)	NA	Q8L868	"Glucan endo-1,3-beta-glucosidase 11"	AT1G30080.1	Glycosyl hydrolase superfamily protein 	LOC_Os06g34020.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g024570.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204110.1.S1_at	A	A1MS	POPTR_0004s14090	POPTR_0004s14090 (9)	scaffold_4:14578617-14580970(-) (9)	NA	Q9FT92	Uncharacterized protein At5g08430	AT5G08430.1	SWIB/MDM2 domain;Plus-3;GYF 	LOC_Os05g34790.1	"GYF domain containing protein, putative"	Medtr6g071560.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204111.1.S1_at	A	A1TS	POPTR_0004s14110	POPTR_0004s14110 (11)	scaffold_4:14604363-14606326(+) (11)	NA	NA	NA	AT5G23490.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). 	LOC_Os05g01060.1	expressed protein	Medtr7g035260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204111.1.S1_s_at	A	A1TS	POPTR_0004s14110	POPTR_0004s14110 (11)	scaffold_4:14604332-14606220(+) (11)	NA	NA	NA	AT5G23490.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). 	LOC_Os05g01060.1	expressed protein	Medtr7g035260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204112.1.S1_at	A	A1TS	POPTR_0004s14130	POPTR_0004s14130 (11)	scaffold_4:14624753-14625637(-) (11)	NA	NA	NA	AT4G27510.1	unknown protein; Has 25 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g26300.1	expressed protein	Medtr1g087070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204113.1.S1_s_at	A	A1TS	POPTR_0004s14130	POPTR_0004s14130 (11)	scaffold_4:14625775-14627206(-) (11)	NA	NA	NA	AT4G27510.1	unknown protein; Has 25 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g26300.1	expressed protein	Medtr1g087070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204114.1.S1_at	A	A1TS	POPTR_0004s14140	POPTR_0004s14140 (11)	scaffold_4:14641154-14642195(+) (11)	NA	P34881	DNA (cytosine-5)-methyltransferase 1	AT5G49160.1	methyltransferase 1 	LOC_Os03g58400.1	"C-5 cytosine-specific DNA methylase, putative, expressed"	Medtr6g071440.1	Bromo adjacent region; C-5 cytosine-specific DNA methylase 	GO:0006306|DNA methylation||GO:0044260|cellular macromolecule metabolic process||GO:0044281|small molecule metabolic process	GO:0003677|DNA binding	NA
PtpAffx.204115.1.S1_at	A	A1TS	POPTR_0004s14180	POPTR_0004s14180 (11)	scaffold_4:14676482-14676927(+) (11)	NA	NA	NA	AT5G08480.2	VQ motif-containing protein 	LOC_Os01g54400.1	"VQ domain containing protein, putative, expressed"	Medtr4g144670.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204116.1.S1_at	A	A1TS	POPTR_0004s14190	POPTR_0004s14190 (11)	scaffold_4:14680975-14681468(-) (11)	NA	Q9FNN9	Putative pentatricopeptide repeat-containing protein At5g08490	AT5G08490.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g18810.1	"pentatricopeptide, putative, expressed"	Medtr3g151720.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204117.1.S1_at	A	A1TS	POPTR_0004s14220	POPTR_0004s14220 (11)	scaffold_4:14695040-14695524(-) (11)	NA	Q9LDX1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	NA	NA	Medtr3g151700.1	"Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204118.1.S1_at	A	A1TS	POPTR_0004s14250	POPTR_0004s14250 (11)	scaffold_4:14714569-14714984(-) (11)	NA	Q3EA00	Putative F-box protein At4g17565	AT4G17565.1	F-box family protein with a domain of unknown function (DUF295) 	LOC_Os03g51090.1	"OsFBDUF17 - F-box and DUF domain containing protein, expressed"	Medtr5g039340.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204119.1.S1_at	A	A1TS	POPTR_0004s14270	POPTR_0004s14270 (11)	scaffold_4:14732583-14732866(-) (11)	NA	Q9FKP8	ZF-HD homeobox protein At5g65410	AT2G02540.1	homeobox protein 21 	LOC_Os11g13930.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr7g035120.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204120.1.S1_at	A	A1TS	POPTR_0004s14300	POPTR_0004s14300 (11)	scaffold_4:14753625-14754992(+) (11)	NA	Q75LL6	Transcriptional adapter ADA2	AT4G16420.1	homolog of yeast ADA2 2B 	LOC_Os03g53960.1	"transcriptional adaptor, putative, expressed"	Medtr2g030360.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; SWIRM; Homeodomain-related "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.204121.1.S1_at	A	A1TS	POPTR_0004s14320	POPTR_0004s14320 (11)	scaffold_4:14772272-14773060(-) (11)	NA	NA	NA	AT2G30900.1	TRICHOME BIREFRINGENCE-LIKE 43 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g064330.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204123.1.S1_at	A	A1TS	POPTR_0004s11930	POPTR_0004s11930 (9)	scaffold_4:10790319-10791601(-) (10)	NA	Q8L9Y0	Serine carboxypeptidase-like 25	AT3G02110.1	serine carboxypeptidase-like 25 	LOC_Os02g55130.2	"OsSCP10 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.204124.1.S1_a_at	A	A1TS	POPTR_0004s11940	POPTR_0004s11940 (11)	scaffold_4:10841576-10841642(+) (11)//scaffold_4:10841681-10841747(+) (11)	NA	NA	NA	AT3G02120.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	AC231342_22.1	hypothetical protein AC231342.3 103028-102034 I EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204124.1.S1_at	A	A1TS	POPTR_0004s11940	POPTR_0004s11940 (11)	scaffold_4:10841512-10842145(+) (11)	NA	NA	NA	AT3G02120.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	AC231342_22.1	hypothetical protein AC231342.3 103028-102034 I EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204125.1.S1_at	A	A1TS	POPTR_0004s11950	POPTR_0004s11950 (11)	scaffold_4:10842690-10843582(-) (11)	NA	NA	NA	AT5G39210.1	chlororespiratory reduction 7 	NA	NA	AC231342_21.1	hypothetical protein AC231342.3 99751-101577 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204126.1.S1_at	A	A1TS	POPTR_0004s11960	POPTR_0004s11960 (11)	scaffold_4:10847228-10848116(+) (11)	NA	NA	NA	AT5G39200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39140.1); Has 65 Blast hits to 65 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g20270.1	expressed protein	AC231342_20.1	hypothetical protein AC231342.3 98308-97023 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204127.1.S1_at	A	A1TS	POPTR_0004s12000	POPTR_0004s12000 (11)	scaffold_4:10902142-10904452(-) (11)	NA	Q9ZQ70	Probable WRKY transcription factor 3	AT2G03340.1	WRKY DNA-binding protein 3 	LOC_Os03g33012.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr7g011100.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.204128.1.S1_at	A	A1TS	POPTR_0004s12020	POPTR_0004s12020 (11)	scaffold_4:10932179-10932347(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204129.1.S1_at	A	A2TS	POPTR_0004s12030	POPTR_0004s12030 (11)//POPTR_0004s12010 (9)	scaffold_4:10927194-10928051(-) (9)//scaffold_4:10943025-10943978(-) (11)	NA	NA	NA	AT3G29185.1	Domain of unknown function (DUF3598) 	LOC_Os03g55164.1	OsWRKY4 - Superfamily of TFs having WRKY and zinc finger domains	Medtr6g013610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20413.1.A1_at	A	A1TS	POPTR_0010s07230	POPTR_0010s07230 (9)	scaffold_10:8369347-8369889(+) (10)	NA	NA	NA	AT3G23980.1	BLISTER 	LOC_Os01g68380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204130.1.S1_at	A	A1TS	POPTR_0004s12040	POPTR_0004s12040 (11)	scaffold_4:10948342-10948676(-) (11)	NA	NA	NA	AT1G69390.1	homologue of bacterial MinE 1 	LOC_Os12g31450.1	"plastid division regulator MinE, putative, expressed"	Medtr5g045950.1	"plastid division regulator MinE, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204131.1.S1_s_at	A	A2TS	POPTR_0004s12070	POPTR_0004s12070 (11)//POPTR_0996s00200 (11)	scaffold_4:10980260-10981794(-) (11)//scaffold_996:1051-2425(-) (11)	NA	O67577	tRNA guanosine-2'-O-methyltransferase	AT5G15390.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os07g40700.2	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr7g011700.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.204132.1.S1_at	A	A1TS	POPTR_0004s12080	POPTR_0004s12080 (11)	scaffold_4:10998244-10998481(+) (11)	NA	A9URZ4	Pescadillo homolog	AT5G14520.1	pescadillo-related 	LOC_Os03g49210.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr7g118450.1	"BRCT; Pescadillo, N-terminal "	GO:0008283|cell proliferation	NA	GO:0005730|nucleolus
PtpAffx.204132.1.S1_s_at	A	A1TS	POPTR_0004s12080	POPTR_0004s12080 (11)	scaffold_4:10996753-10998494(+) (11)	NA	A9URZ4	Pescadillo homolog	AT5G14520.1	pescadillo-related 	LOC_Os03g49210.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr7g118450.1	"BRCT; Pescadillo, N-terminal "	GO:0008283|cell proliferation	NA	GO:0005730|nucleolus
PtpAffx.204133.1.S1_at	A	A1TS	POPTR_0004s12100	POPTR_0004s12100 (11)	scaffold_4:11027755-11028105(+) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT1G26800.1	RING/U-box superfamily protein 	LOC_Os05g40980.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g044570.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204135.1.S1_at	A	A1MS	POPTR_0004s12130	POPTR_0004s12130 (11)	scaffold_4:11063975-11064029(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204137.1.S1_s_at	A	A2TS	POPTR_0004s08100	POPTR_0004s12130 (11)//POPTR_0004s08100 (11)	scaffold_4:6626972-6627417(+) (11)//scaffold_4:11063620-11064069(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204139.1.S1_at	A	A1MS	POPTR_0004s12180	POPTR_0004s12180 (10)	scaffold_4:11139304-11140260(+) (11)	NA	Q9LSJ5	ABC transporter B family member 18	AT3G28390.1	P-glycoprotein 18 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204140.1.S1_at	A	A1MS	POPTR_0004s12190	POPTR_0004s12190 (11)	scaffold_4:11172995-11173126(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204140.1.S1_x_at	A	A1MS	POPTR_0004s12190	POPTR_0004s12190 (11)	scaffold_4:11172972-11173126(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204141.1.S1_at	A	A1TS	POPTR_0004s12210	POPTR_0004s12210 (10)	scaffold_4:11223633-11225091(-) (10)	NA	Q9MAC5	Polypyrimidine tract-binding protein homolog 1	AT3G01150.1	polypyrimidine tract-binding protein 1 	LOC_Os08g33830.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr3g124540.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.204143.1.S1_s_at	A	A1TS	POPTR_0004s12220	POPTR_0004s12220 (11)	scaffold_4:11263952-11264582(+) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.204144.1.S1_at	A	A1TS	POPTR_0004s12230	POPTR_0004s12230 (11)	scaffold_4:11288633-11289159(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G02100.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os10g18510.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g012430.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204145.1.S1_s_at	A	A1TS	POPTR_0004s12270	POPTR_0004s12270 (11)	scaffold_4:11354215-11354415(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204146.1.S1_at	A	A1TS	POPTR_0004s12290	POPTR_0004s12290 (11)	scaffold_4:11389081-11389234(+) (11)	NA	Q39601	FACT complex subunit SSRP1	AT3G28730.1	high mobility group 	LOC_Os01g08970.1	"SSRP1-like FACT complex subunit, putative, expressed"	Medtr5g089980.1	HMG1/2 (high mobility group) box; Structure-specific recognition protein 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.204146.1.S1_s_at	A	A1TS	POPTR_0004s12290	POPTR_0004s12290 (11)	scaffold_4:11388397-11389145(+) (11)	NA	Q39601	FACT complex subunit SSRP1	AT3G28730.1	high mobility group 	LOC_Os01g08970.1	"SSRP1-like FACT complex subunit, putative, expressed"	Medtr5g089980.1	HMG1/2 (high mobility group) box; Structure-specific recognition protein 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.204147.1.S1_at	A	A1TS	POPTR_0004s12300	POPTR_0004s12300 (11)	scaffold_4:11393184-11393924(-) (11)	NA	P15722	Probable pectate lyase P59	AT5G15110.1	Pectate lyase family protein 	LOC_Os06g38510.2	"pectate lyase precursor, putative, expressed"	Medtr8g112850.1	"Pectate lyase, N-terminal; Virulence factor, pectin lyase fold "	NA	GO:0030570|pectate lyase activity	NA
PtpAffx.204148.1.S1_at	A	A1TS	POPTR_0004s12310	POPTR_0004s12310 (11)	scaffold_4:11406953-11407808(+) (11)	NA	Q9LFP6	Putative auxin efflux carrier component 5	AT5G15100.1	Auxin efflux carrier family protein 	LOC_Os01g51780.1	"auxin efflux carrier component, putative, expressed"	Medtr7g008720.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.204150.1.S1_at	A	A1TS	POPTR_0004s12330	POPTR_0004s12330 (11)	scaffold_4:11426105-11426682(+) (11)	NA	Q9FLZ9	Pentatricopeptide repeat-containing protein At5g39350	AT5G39350.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g44480.1	"pentatricopeptide, putative"	Medtr4g134960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204151.1.S1_at	A	A1TS	POPTR_0004s12390	POPTR_0004s12390 (11)	scaffold_4:11491382-11491793(-) (11)	NA	NA	NA	AT5G39380.1	Plant calmodulin-binding protein-related 	LOC_Os03g11290.1	expressed protein	Medtr6g013960.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204152.1.S1_at	A	A1TS	POPTR_0004s12400	POPTR_0004s12400 (11)	scaffold_4:11508236-11508959(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204153.1.S1_at	A	A1TS	POPTR_0004s12410	POPTR_0004s12410 (11)	scaffold_4:11513387-11516109(-) (11)	NA	NA	NA	AT3G01060.1	unknown protein; Has 640 Blast hits to 638 proteins in 201 species: Archae - 0; Bacteria - 293; Metazoa - 0; Fungi - 71; Plants - 72; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). 	LOC_Os05g43650.1	expressed protein	Medtr6g013900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204154.1.S1_at	A	A1TS	POPTR_0004s12430	POPTR_0004s12430 (11)	scaffold_4:11540271-11540810(+) (11)	NA	Q9LS72	Pentatricopeptide repeat-containing protein At3g29230	AT3G29230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g38880.1	"tetratricopeptide-like helical, putative, expressed"	Medtr7g011110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204155.1.S1_s_at	A	A1TS	POPTR_0004s12450	POPTR_0004s12450 (11)	scaffold_4:11553260-11553471(+) (11)	NA	NA	NA	AT1G69360.1	Plant protein of unknown function (DUF863) 	LOC_Os03g55130.2	expressed protein	Medtr5g046300.1	"Protein of unknown function DUF863, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204155.1.S1_x_at	A	A1TS	POPTR_0004s12450	POPTR_0004s12450 (11)	scaffold_4:11553279-11553846(+) (11)	NA	NA	NA	AT1G69360.1	Plant protein of unknown function (DUF863) 	LOC_Os03g55130.2	expressed protein	Medtr5g046300.1	"Protein of unknown function DUF863, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204156.1.S1_at	A	A1TS	POPTR_0004s12460	POPTR_0004s12460 (11)	scaffold_4:11556771-11557309(-) (11)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os06g18670.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr6g025520.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204156.1.S1_x_at	A	A1TS	POPTR_0004s12460	POPTR_0004s12460 (11)	scaffold_4:11556771-11557309(-) (11)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os06g18670.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr6g025520.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204157.1.S1_s_at	A	A1TS	POPTR_0004s12500	POPTR_0004s12500 (11)	scaffold_4:11685212-11685589(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT5G15210.1	homeobox protein 30 	LOC_Os09g24820.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr7g009640.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204158.1.S1_at	A	A1TS	POPTR_0004s12530	POPTR_0004s12530 (11)	scaffold_4:11854956-11855402(-) (11)	NA	P81392	Myb-related protein 306	AT3G28910.1	myb domain protein 30 	LOC_Os08g33940.1	"MYB family transcription factor, putative, expressed"	Medtr6g012780.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204161.1.S1_at	A	A1TS	POPTR_0004s11510	POPTR_0004s11510 (11)	scaffold_4:10289257-10289744(+) (11)	NA	Q9S7W5	Transcription factor TCP13	AT3G02150.2	plastid transcription factor 1 	LOC_Os01g55750.3	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204162.1.S1_at	A	A1TS	POPTR_0004s11530	POPTR_0004s11530 (9)	scaffold_4:10300948-10301106(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204163.1.S1_s_at	A	A1TS	POPTR_0004s11540	POPTR_0004s11540 (11)	scaffold_4:10304624-10305387(-) (11)//scaffold_4:10305006-10305627(-) (11)//scaffold_4:10305246-10305629(-) (10)	NA	NA	NA	AT4G26190.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g01850.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g071320.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204164.1.S1_s_at	A	A2TS	POPTR_0004s11550	POPTR_0017s13080 (11)//POPTR_0004s11550 (11)	scaffold_17:13255055-13256358(+) (11)//scaffold_4:10341323-10342724(+) (11)	NA	Q9FVW3	Probable esterase At1g33990	AT3G29770.1	methyl esterase 11 	LOC_Os07g41230.1	"esterase, putative, expressed"	Medtr3g012890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204164.1.S1_x_at	A	A1TS	POPTR_0004s11550	POPTR_0004s11550 (11)	scaffold_4:10340584-10342943(+) (11)	NA	Q9FVW3	Probable esterase At1g33990	AT3G29770.1	methyl esterase 11 	LOC_Os07g41230.1	"esterase, putative, expressed"	Medtr3g012890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204165.1.S1_at	A	A1TS	POPTR_0004s11590	POPTR_0004s11590 (11)	scaffold_4:10374452-10374966(+) (11)	NA	NA	NA	AT4G01240.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g27980.1	"methyltransferase domain containing protein, expressed"	Medtr5g085490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204166.1.S1_at	A	A1TS	POPTR_0004s11600	POPTR_0004s11600 (11)	scaffold_4:10377159-10379405(-) (11)	NA	Q8BGF9	Solute carrier family 25 member 44	AT5G15640.1	Mitochondrial substrate carrier family protein 	LOC_Os03g54760.1	"mitochondrial carrier protein, putative, expressed"	Medtr2g036920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204168.1.S1_at	A	A1TS	POPTR_0004s11630	POPTR_0004s11630 (11)	scaffold_4:10410678-10410993(+) (11)	NA	NA	NA	AT3G29970.1	B12D protein 	LOC_Os07g41340.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204169.1.S1_at	A	A1TS	POPTR_0004s11640	POPTR_0004s11640 (11)	scaffold_4:10416906-10417303(-) (11)	NA	Q43820	S-adenosylmethionine decarboxylase proenzyme	AT1G79920.2	Heat shock protein 70 (Hsp 70) family protein 	NA	NA	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204170.1.S1_at	A	A1TS	POPTR_0004s11650	POPTR_0004s11650 (11)	scaffold_4:10432652-10432698(+) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT1G13680.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os03g30130.3	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204170.1.S1_s_at	A	A1TS	POPTR_0004s11650	POPTR_0004s11650 (11)	scaffold_4:10433061-10433208(+) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT1G13680.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os03g30130.3	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204172.1.S1_at	A	A1TS	POPTR_0004s11730	POPTR_0004s11730 (11)	scaffold_4:10590198-10590724(-) (11)	NA	NA	NA	AT5G67450.1	zinc-finger protein 1 	LOC_Os12g39400.1	"ZOS12-09 - C2H2 zinc finger protein, expressed"	Medtr1g135260.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.204173.1.S1_at	A	A1TS	POPTR_0004s11740	POPTR_0004s11740 (11)	scaffold_4:10595196-10596378(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204174.1.S1_at	A	A1TS	POPTR_0004s11750	POPTR_0004s11750 (11)	scaffold_4:10602780-10603351(-) (11)	NA	NA	NA	AT1G26580.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g31230.2	"MYB family transcription factor, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204176.1.S1_at	A	A1TS	POPTR_0004s11770	POPTR_0004s11770 (11)	scaffold_4:10640280-10642226(+) (11)	NA	NA	NA	AT5G15510.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g11400.2	"targeting protein-related, putative, expressed"	Medtr6g015060.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204179.1.S1_at	A	A1TS	POPTR_0004s11810	POPTR_0004s11810 (11)	scaffold_4:10673211-10673873(-) (11)	NA	NA	NA	AT5G15540.2	PHD finger family protein 	LOC_Os07g01940.1	"sister chromatid cohesion 2, putative, expressed"	AC231342_26.1	"EMB2773 ; binding (exp, putative AC231342.3 117516-122454 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204180.1.S1_at	A	A1TS	POPTR_0004s11820	POPTR_0004s11820 (11)	scaffold_4:10675457-10676030(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204181.1.S1_at	A	A1TS	POPTR_0004s11830	POPTR_0004s11830 (11)	scaffold_4:10691470-10691774(+) (11)	NA	NA	NA	AT5G15540.1	PHD finger family protein 	NA	NA	AC231342_23.1	"Zinc finger, FYVE/PHD-type AC231342.3 105368-115322 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204181.1.S1_x_at	A	A1TS	POPTR_0004s11830	POPTR_0004s11830 (11)	scaffold_4:10691470-10691771(+) (11)	NA	NA	NA	AT5G15540.1	PHD finger family protein 	NA	NA	AC231342_23.1	"Zinc finger, FYVE/PHD-type AC231342.3 105368-115322 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204182.1.S1_at	A	A1TS	POPTR_0004s11840	POPTR_0004s11840 (11)	scaffold_4:10692291-10692950(-) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT5G17260.1	NAC domain containing protein 86 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204183.1.S1_at	A	A1TS	POPTR_0004s11870	POPTR_0004s11870 (11)	scaffold_4:10742654-10742983(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G02100.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g55040.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g012450.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204184.1.S1_at	A	A1TS	POPTR_0004s11880	POPTR_0004s11880 (11)	scaffold_4:10746664-10747742(-) (11)	NA	Q6NX08	Ribosome biogenesis protein wdr12	AT5G15550.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g40930.1	"WD repeat-containing protein 12, putative, expressed"	Medtr7g117600.1	WD40-like; NLE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204186.1.S1_at	A	A1TS	POPTR_0004s11890	POPTR_0004s11890 (10)	scaffold_4:10750296-10750571(-) (10)	NA	A8IR43	Ribosome biogenesis protein WDR12 homolog	AT5G15550.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g40930.1	"WD repeat-containing protein 12, putative, expressed"	Medtr7g117600.1	WD40-like; NLE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204189.1.S1_s_at	A	A1TS	POPTR_0004s15660	POPTR_0004s15660 (11)	scaffold_4:16246193-16246383(-) (11)	NA	Q9XIM8	Pentatricopeptide repeat-containing protein At2g15980	AT2G15980.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g21930.3	"PPR repeat containing protein, expressed"	Medtr4g157210.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204191.1.S1_at	A	A1TS	POPTR_0004s15680	POPTR_0004s15680 (11)	scaffold_4:16258862-16259210(+) (11)	NA	NA	NA	AT2G23690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os06g41940.1	expressed protein	Medtr5g018720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204193.1.S1_at	A	A1TS	POPTR_0004s15720	POPTR_0004s15720 (11)	scaffold_4:16293793-16294543(-) (11)	NA	NA	NA	AT5G66600.4	"Protein of unknown function, DUF547 "	LOC_Os03g55890.1	"ternary complex factor MIP1, putative, expressed"	AC233653_9.1	Protein of unknown function DUF547 AC233653.2 46326-50755 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204194.1.S1_at	A	A1TS	POPTR_0004s15730	POPTR_0004s15730 (11)	scaffold_4:16303240-16303415(-) (11)	NA	Q949V6	Probable E3 ubiquitin-protein ligase ARI1	AT4G34370.1	RING/U-box superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204195.1.S1_at	A	A1TS	POPTR_0004s15740	POPTR_0004s15740 (11)	scaffold_4:16307055-16308652(-) (11)	NA	Q9VIK9	Methyltransferase-like protein 13	AT4G34360.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os11g35340.1	"methyltransferase, putative, expressed"	Medtr4g089760.1	"Putative methyltransferase KIAA0859 homolog, "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.204196.1.S1_at	A	A1TS	POPTR_0004s15770	POPTR_0004s15770 (11)	scaffold_4:16320102-16321144(-) (11)	NA	NA	NA	AT1G49380.1	cytochrome c biogenesis protein family 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204197.1.S1_at	A	A1TS	POPTR_0004s15780	POPTR_0004s15780 (11)	scaffold_4:16321868-16322256(+) (11)	NA	NA	NA	AT3G18870.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g57149.1	"mTERF domain containing protein, expressed"	Medtr7g092820.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204198.1.S1_at	A	A1TS	POPTR_0004s15800	POPTR_0004s15800 (11)	scaffold_4:16335827-16336179(-) (11)	NA	Q9SYZ7	UPF0496 protein At4g34320	AT4G34320.1	Protein of unknown function (DUF677) 	LOC_Os03g10240.2	"DUF677 domain containing protein, putative, expressed"	Medtr5g019340.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204199.1.S1_at	A	A1TS	POPTR_0004s15810	POPTR_0004s15810 (11)	scaffold_4:16355690-16356244(-) (11)	NA	Q94ID2	"Adenylate isopentenyltransferase 5, chloroplastic"	AT5G19040.1	isopentenyltransferase 5 	LOC_Os03g59570.1	"IPP transferase, putative, expressed"	Medtr1g140830.1	Isopentenyl transferase-like 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.204200.1.S1_at	A	A1TS	POPTR_0004s15820	POPTR_0004s15820 (11)	scaffold_4:16367211-16367619(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g009330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204201.1.S1_at	A	A1TS	POPTR_0004s15840	POPTR_0004s15840 (11)	scaffold_4:16374790-16375555(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204201.1.S1_s_at	A	A1TS	POPTR_0004s15840	POPTR_0004s15840 (11)	scaffold_4:16375289-16375611(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204201.1.S1_x_at	A	A1TS	POPTR_0004s15840	POPTR_0004s15840 (11)	scaffold_4:16374792-16375590(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204202.1.S1_at	A	A1TS	POPTR_0004s15850	POPTR_0004s15850 (11)	scaffold_4:16379319-16379868(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204203.1.S1_s_at	A	A2TS	POPTR_0004s15860	POPTR_0004s15920 (11)//POPTR_0004s15860 (11)	scaffold_4:16386050-16386823(+) (11)//scaffold_4:16419758-16420534(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204204.1.S1_s_at	A	A2TS	POPTR_0004s15930	POPTR_0004s15930 (11)//POPTR_0004s15870 (10)	scaffold_4:16390612-16391128(-) (10)//scaffold_4:16423293-16423836(-) (11)	NA	Q9LHN5	Putative pentatricopeptide repeat-containing protein At3g18840	AT3G18840.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g56400.1	"pentatricopeptide, putative, expressed"	Medtr8g077070.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204205.1.S1_s_at	A	A1TS	POPTR_0004s15940	POPTR_0004s15940 (11)	scaffold_4:16393366-16394382(-) (10)//scaffold_4:16426474-16427461(-) (11)	POPTR_0004s15880 (8)	P30235	Pseudouridine kinase	AT1G49350.1	pfkB-like carbohydrate kinase family protein 	LOC_Os05g09370.4	"kinase, pfkB family, putative, expressed"	Medtr4g114470.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204209.1.S1_at	A	A1TS	POPTR_0004s15960	POPTR_0004s15960 (11)	scaffold_4:16446934-16447520(+) (11)	NA	Q8VZ80	Polyol transporter 5	AT3G18830.1	polyol/monosaccharide transporter 5 	LOC_Os07g39350.1	"transporter family protein, putative, expressed"	Medtr3g159730.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.204210.1.S1_s_at	A	A1TS	POPTR_0004s16000	POPTR_0004s16000 (11)	scaffold_4:16474613-16474990(-) (11)	NA	NA	NA	AT1G49330.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os05g47620.1	conserved hypothetical protein	Medtr2g055770.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204212.1.S1_at	A	A1TS	POPTR_0004s16040	POPTR_0004s16040 (11)	scaffold_4:16497302-16497548(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g095260.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204214.1.S1_at	A	A1TS	POPTR_0004s16150	POPTR_0004s16150 (11)	scaffold_4:16596962-16597469(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204215.1.S1_at	A	A2TS	POPTR_0004s16160	POPTR_0004s16160 (11)//POPTR_0019s01180 (10)	scaffold_19:906732-907078(-) (10)//scaffold_19:2993800-2994104(+) (9)//scaffold_4:16602500-16602846(-) (11)//scaffold_6:7344141-7344487(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204216.1.S1_at	A	A1TS	POPTR_0004s16170	POPTR_0004s16170 (11)	scaffold_4:16608311-16609659(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204218.1.S1_s_at	A	A1TS	POPTR_0004s16200	POPTR_0004s16200 (11)	scaffold_4:16623807-16624081(+) (11)	NA	NA	NA	AT1G63850.1	BTB/POZ domain-containing protein 	LOC_Os03g51380.1	expressed protein	Medtr4g095540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204219.1.S1_at	A	A1TS	POPTR_0004s16210	POPTR_0004s16210 (11)	scaffold_4:16625395-16626060(-) (11)	NA	NA	NA	AT1G75180.3	Erythronate-4-phosphate dehydrogenase family protein 	NA	NA	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204220.1.S1_at	A	A1TS	POPTR_0004s16250	POPTR_0004s16250 (11)	scaffold_4:16659637-16660430(-) (11)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
PtpAffx.204221.1.S1_at	A	A1TS	POPTR_0004s16270	POPTR_0004s16270 (11)	scaffold_4:16716618-16717644(+) (11)	NA	NA	NA	AT4G39250.1	RAD-like 1 	LOC_Os01g44390.2	"MYB family transcription factor, putative, expressed"	Medtr7g106250.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204222.1.S1_at	A	A1TS	POPTR_0004s16300	POPTR_0004s16300 (9)	scaffold_4:16763707-16764136(+) (11)	NA	NA	NA	AT2G18360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g44960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g093180.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204223.1.S1_at	A	A1TS	POPTR_0004s16310	POPTR_0004s16310 (11)	scaffold_4:16777001-16779208(+) (11)	NA	Q8IUS5	Epoxide hydrolase 4	AT2G18360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g44960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g093180.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204224.1.S1_at	A	A1TS	POPTR_0004s16320	POPTR_0004s16320 (11)	scaffold_4:16784158-16784193(-) (11)	NA	NA	NA	AT1G75250.1	RAD-like 6 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr3g162290.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204224.1.S1_x_at	A	A1TS	POPTR_0004s16320	POPTR_0004s16320 (11)	scaffold_4:16784139-16784254(-) (11)	NA	NA	NA	AT1G75250.1	RAD-like 6 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr3g162290.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204225.1.S1_at	A	A1TS	POPTR_0004s16340	POPTR_0004s16340 (11)	scaffold_4:16833454-16834744(-) (11)	NA	NA	NA	AT2G21620.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g47650.1	"universal stress protein domain containing protein, putative, expressed"	Medtr3g162380.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.204227.1.S1_at	A	A1TS	POPTR_0004s16410	POPTR_0004s16410 (11)	scaffold_4:16867771-16868833(-) (11)	NA	O48670	Protein RER1A	AT4G39220.1	Rer1 family protein 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
PtpAffx.204228.1.S1_at	A	A1TS	POPTR_0004s16430	POPTR_0004s16430 (11)	scaffold_4:16889649-16889752(+) (11)	NA	Q84V03	F-box protein At2g16365	AT2G16365.2	F-box family protein 	NA	NA	Medtr4g095970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204228.1.S1_s_at	A	A1TS	POPTR_0004s16430	POPTR_0004s16430 (11)	scaffold_4:16889785-16890189(+) (11)	NA	Q84V03	F-box protein At2g16365	AT2G16365.2	F-box family protein 	NA	NA	Medtr4g095970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204229.1.S1_at	A	A1TS	POPTR_0004s16440	POPTR_0004s16440 (11)	scaffold_4:16896709-16898006(-) (11)	NA	P55231	"Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic"	AT4G39210.1	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os05g50380.2	"glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed"	Medtr4g095980.1	Protein kinase; ADP-glucose pyrophosphorylase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.204230.1.S1_at	A	A1TS	POPTR_0004s16460	POPTR_0004s16460 (10)	scaffold_4:16919812-16920196(+) (11)	NA	NA	NA	AT4G34560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g096180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204231.1.S1_at	A	A1TS	POPTR_0004s16490	POPTR_0004s16490 (11)	scaffold_4:16943219-16943905(-) (11)	NA	Q94A94	"Diaminopimelate decarboxylase 2, chloroplastic"	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein 	LOC_Os02g24354.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr5g022600.1	Diaminopimelate decarboxylase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.204232.1.S1_at	A	A1TS	POPTR_0004s16500	POPTR_0004s16500 (11)	scaffold_4:16955145-16956158(+) (11)	NA	Q10137	Sec14 cytosolic factor	AT2G21540.2	SEC14-like 3 	LOC_Os02g24430.2	expressed protein	Medtr4g096250.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204233.1.S1_at	A	A1TS	POPTR_0004s16510	POPTR_0004s16510 (11)	scaffold_4:16957014-16957905(-) (11)	NA	P45816	SEC14 cytosolic factor	AT2G21520.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g04020.1	expressed protein	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204233.1.S1_s_at	A	A1TS	POPTR_0004s16510	POPTR_0004s16510 (11)	scaffold_4:16957815-16958998(-) (11)	NA	P45816	SEC14 cytosolic factor	AT2G21520.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g04020.1	expressed protein	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204234.1.S1_s_at	A	A1TS	POPTR_0004s16530	POPTR_0004s16530 (11)	scaffold_4:16976633-16980668(+) (11)	NA	Q7FGZ2	DEAD-box ATP-dependent RNA helicase 1	AT4G15850.1	RNA helicase 1 	LOC_Os02g55260.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g085470.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.204237.1.S1_at	A	A1TS	POPTR_0004s16610	POPTR_0004s16610 (11)	scaffold_4:17028743-17029365(+) (11)	NA	Q9T020	Probable receptor-like protein kinase At4g39110	AT4G39110.1	Malectin/receptor-like protein kinase family protein 	LOC_Os06g03610.1	"TKL_IRAK_CrRLK1L-1.13 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g040400.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204238.1.S1_at	A	A1TS	POPTR_0004s16640	POPTR_0004s16640 (11)	scaffold_4:17047331-17047597(+) (11)	NA	B3NAN8	DNA repair and recombination protein RAD54-like	AT2G16390.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os06g14440.4	"DRD1, putative, expressed"	Medtr7g027270.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.204240.1.S1_at	A	A1TS	POPTR_0004s16660	POPTR_0004s16660 (11)	scaffold_4:17059336-17059810(-) (11)	NA	O65685	BEL1-like homeodomain protein 6	AT4G34610.2	BEL1-like homeodomain 6 	LOC_Os12g43950.4	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.204241.1.S1_at	A	A1MS	POPTR_0004s16670	POPTR_0004s16670 (10)	scaffold_4:17072987-17073391(-) (10)	NA	NA	NA	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g43970.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr4g163320.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204242.1.S1_at	A	A1TS	POPTR_0004s16680	POPTR_0004s16680 (11)	scaffold_4:17076274-17077466(+) (11)	NA	NA	NA	AT2G21440.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g58720.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g093820.1	RNA-binding region RNP-1 (RNA recognition motif) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204243.1.S1_at	A	A1TS	POPTR_0004s16730	POPTR_0004s16730 (11)	scaffold_4:17112964-17113425(-) (11)	NA	Q9SDZ9	Purple acid phosphatase 2	AT2G16430.1	purple acid phosphatase 10 	LOC_Os01g56880.1	"purple acid phosphatase precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204244.1.S1_at	A	A1TS	POPTR_0004s16760	POPTR_0004s16760 (11)	scaffold_4:17126954-17127133(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204245.1.S1_at	A	A1TS	POPTR_0004s16770	POPTR_0004s16770 (10)	scaffold_4:17130986-17131710(-) (10)	NA	NA	NA	AT5G66350.1	Lateral root primordium (LRP) protein-related 	LOC_Os09g36160.1	"LRP1, putative, expressed"	Medtr1g028540.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204246.1.S1_at	A	A1TS	POPTR_0004s16780	POPTR_0004s16780 (11)	scaffold_4:17134882-17135979(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204247.1.S1_s_at	A	A1TS	POPTR_0004s16790	POPTR_0004s16790 (11)	scaffold_4:17139429-17139860(-) (11)	NA	NA	NA	AT4G34630.1	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	NA	NA	Medtr4g096570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204248.1.S1_at	A	A1TS	POPTR_0004s16850	POPTR_0004s16850 (11)	scaffold_4:17214487-17214703(+) (11)	NA	O65351	Subtilisin-like protease	AT4G10520.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr4g132770.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.204249.1.S1_at	A	A1TS	POPTR_0004s16870	POPTR_0004s16870 (9)	scaffold_4:17243456-17244537(+) (11)	NA	Q42600	Cytochrome P450 84A1	AT4G36220.1	ferulic acid 5-hydroxylase 1 	LOC_Os10g36848.1	"cytochrome P450, putative, expressed"	Medtr5g021320.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204250.1.S1_at	A	A1TS	POPTR_0004s16880	POPTR_0004s16880 (11)	scaffold_4:17248130-17248570(-) (11)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr3g163040.1	"Calcium-binding EF-hand; SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.204251.1.S1_at	A	A1TS	POPTR_0004s16880	POPTR_0004s16880 (11)	scaffold_4:17253343-17253788(-) (11)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr3g163040.1	"Calcium-binding EF-hand; SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.204252.1.S1_at	A	A1TS	POPTR_0004s16890	POPTR_0004s16890 (11)	scaffold_4:17257823-17258645(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204253.1.S1_at	A	A1TS	POPTR_0004s16970	POPTR_0004s16970 (9)	scaffold_4:17347543-17347988(+) (9)	NA	Q54NP8	Kinesin-related protein 4	AT2G21300.2	ATP binding microtubule motor family protein 	LOC_Os02g43130.1	"kinesin motor domain containing protein, expressed"	Medtr4g097240.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.204254.1.S1_at	A	A1TS	POPTR_0004s17010	POPTR_0004s17010 (11)	scaffold_4:17360657-17360778(-) (11)	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G21270.2	ubiquitin fusion degradation 1 	LOC_Os02g08480.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.204254.1.S1_s_at	A	A1TS	POPTR_0004s17010	POPTR_0004s17010 (11)	scaffold_4:17360501-17360925(-) (11)	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G21270.2	ubiquitin fusion degradation 1 	LOC_Os02g08480.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.204255.1.S1_at	A	A1TS	POPTR_0004s17020	POPTR_0004s17020 (11)	scaffold_4:17370595-17370635(-) (11)	NA	Q43075	Arginine decarboxylase	AT4G34710.2	arginine decarboxylase 2 	LOC_Os06g04070.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr4g097390.1	Arginine decarboxylase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.204256.1.S1_at	A	A1TS	POPTR_0004s17050	POPTR_0004s17050 (11)	scaffold_4:17408761-17410571(-) (11)	NA	Q9SI62	Probable polyprenol reductase 2	AT2G16530.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os04g48750.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr4g097490.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.204258.1.S1_at	A	A1TS	POPTR_0004s17080	POPTR_0004s17080 (11)	scaffold_4:17439029-17439211(+) (11)	NA	Q69IL4	Transcription factor RF2a	AT4G38900.3	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g03550.1	"bZIP family transcription factor, putative, expressed"	Medtr4g097530.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.204258.1.S1_s_at	A	A1TS	POPTR_0004s17080	POPTR_0004s17080 (11)	scaffold_4:17440001-17440291(+) (11)	NA	Q69IL4	Transcription factor RF2a	AT4G38900.3	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g03550.1	"bZIP family transcription factor, putative, expressed"	Medtr4g097530.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.204259.1.S1_at	A	A1TS	POPTR_0004s17090	POPTR_0004s17090 (11)	scaffold_4:17442837-17444099(+) (11)	NA	Q9T0J6	tRNA-dihydrouridine synthase 3-like	AT4G38890.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os04g02730.1	"tRNA-dihydrouridine synthase 3-like, putative, expressed"	Medtr3g163110.1	"Zinc finger, CCCH-type; Dihydrouridine synthase, DuS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20426.1.A1_at	A	A1TS	POPTR_0002s01310	POPTR_0002s01310 (11)	scaffold_2:699767-700004(+) (11)	NA	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT4G35230.1	BR-signaling kinase 1 	LOC_Os03g04050.1	"protein kinase family protein, putative, expressed"	Medtr5g106610.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204260.1.S1_at	A	A1TS	POPTR_0004s17170	POPTR_0004s17170 (11)	scaffold_4:17503748-17504012(-) (11)	NA	P33080	Auxin-induced protein X10A	AT4G38840.1	SAUR-like auxin-responsive protein family  	LOC_Os06g48860.1	OsSAUR28 - Auxin-responsive SAUR gene family member	Medtr4g097950.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204261.1.S1_at	A	A1TS	POPTR_0004s17180	POPTR_0004s17180 (11)	scaffold_4:17506990-17507271(-) (11)	NA	P33080	Auxin-induced protein X10A	AT5G18020.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g097750.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204262.1.S1_at	A	A1TS	POPTR_0004s17190	POPTR_0004s17190 (11)	scaffold_4:17513746-17513993(-) (11)	NA	P33079	Auxin-induced protein 10A5	AT4G38840.1	SAUR-like auxin-responsive protein family  	LOC_Os06g48860.1	OsSAUR28 - Auxin-responsive SAUR gene family member	Medtr4g097730.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204262.1.S1_x_at	A	A1TS	POPTR_0004s17190	POPTR_0004s17190 (11)	scaffold_4:17513746-17513993(-) (11)	NA	P33079	Auxin-induced protein 10A5	AT4G38840.1	SAUR-like auxin-responsive protein family  	LOC_Os06g48860.1	OsSAUR28 - Auxin-responsive SAUR gene family member	Medtr4g097730.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204263.1.S1_at	A	A2TS	POPTR_0004s17200	POPTR_0004s17220 (11)//POPTR_0004s17200 (11)	scaffold_4:17515178-17515349(+) (11)//scaffold_4:17530151-17530322(+) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT4G38840.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr3g163170.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204264.1.S1_at	A	A1TS	POPTR_0004s17230	POPTR_0004s17230 (11)	scaffold_4:17531340-17531590(-) (11)	NA	P33079	Auxin-induced protein 10A5	AT5G18020.1	SAUR-like auxin-responsive protein family  	LOC_Os06g48860.1	OsSAUR28 - Auxin-responsive SAUR gene family member	Medtr4g097950.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204265.1.S1_at	A	A1TS	POPTR_0004s17260	POPTR_0004s17260 (11)	scaffold_4:17547048-17547111(-) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT5G18080.1	SAUR-like auxin-responsive protein family  	LOC_Os02g42990.1	"OsSAUR11 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g098000.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204265.1.S1_x_at	A	A1TS	POPTR_0004s17260	POPTR_0004s17260 (11)	scaffold_4:17547034-17547111(-) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT5G18080.1	SAUR-like auxin-responsive protein family  	LOC_Os02g42990.1	"OsSAUR11 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g098000.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204267.1.S1_at	A	A1MS	POPTR_0004s17270	POPTR_0004s17270 (9)	scaffold_211:29196-29493(-) (11)//scaffold_4:17557603-17557900(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204268.1.S1_at	A	A1TS	POPTR_0004s17290	POPTR_0004s17290 (11)	scaffold_4:17567140-17567349(-) (11)	NA	P33081	Auxin-induced protein 15A	AT4G34770.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr3g105010.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204269.1.S1_at	A	A1TS	POPTR_0004s17300	POPTR_0004s17300 (11)	scaffold_4:17576092-17576322(-) (11)	NA	P33081	Auxin-induced protein 15A	AT4G34770.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02520.1	"OsSAUR31 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g098370.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204270.1.S1_at	A	A1TS	POPTR_0004s17310	POPTR_0004s17310 (11)	scaffold_4:17578040-17578839(-) (11)	NA	P33082	Auxin-induced protein X15	AT2G21210.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02520.1	"OsSAUR31 - Auxin-responsive SAUR gene family member, expressed"	Medtr3g163180.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204271.1.S1_at	A	A1TS	POPTR_0004s17320	POPTR_0004s17320 (11)	scaffold_4:17585566-17585841(+) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT4G34770.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02520.1	"OsSAUR31 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g098320.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204272.1.S1_s_at	A	A1TS	POPTR_0004s17330	POPTR_0004s17330 (11)	scaffold_4:17591372-17591484(-) (11)	NA	P33081	Auxin-induced protein 15A	AT4G34770.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02530.1	OsSAUR32 - Auxin-responsive SAUR gene family member	Medtr4g097870.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204273.1.S1_at	A	A1TS	POPTR_0004s17340	POPTR_0004s17340 (11)	scaffold_4:17595031-17595241(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g098370.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204274.1.S1_at	A	A1TS	POPTR_0004s17350	POPTR_0004s17350 (11)	scaffold_4:17598318-17598590(+) (11)	NA	P33079	Auxin-induced protein 10A5	AT2G21210.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02520.1	"OsSAUR31 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g098370.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204275.1.S1_at	A	A1TS	POPTR_0234s00220	POPTR_0234s00220 (11)	scaffold_234:12443-13188(+) (11)	NA	P49690	60S ribosomal protein L23	AT3G04400.1	Ribosomal protein L14p/L23e family protein 	LOC_Os10g32920.1	"ribosomal protein, putative, expressed"	Medtr7g116740.2	Ribosomal protein L14b/L23e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.204275.1.S1_x_at	A	A1TS	POPTR_0234s00220	POPTR_0234s00220 (11)	scaffold_234:12443-13188(+) (11)	NA	P49690	60S ribosomal protein L23	AT3G04400.1	Ribosomal protein L14p/L23e family protein 	LOC_Os10g32920.1	"ribosomal protein, putative, expressed"	Medtr7g116740.2	Ribosomal protein L14b/L23e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.204276.1.S1_at	A	A2TS	POPTR_0004s17370	POPTR_0004s17370 (11)//POPTR_0234s00200 (9)	scaffold_234:161-430(-) (11)//scaffold_4:17605027-17605296(+) (11)	NA	P33080	Auxin-induced protein X10A	AT5G18060.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02530.1	OsSAUR32 - Auxin-responsive SAUR gene family member	Medtr4g098370.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204277.1.S1_at	A	A1TS	POPTR_0004s17380	POPTR_0004s17380 (11)	scaffold_4:17606538-17606983(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204278.1.S1_at	A	A1TS	POPTR_0004s17390	POPTR_0004s17390 (11)	scaffold_4:17607282-17607463(-) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT1G21980.1	phosphatidylinositol-4-phosphate 5-kinase 1 	LOC_Os03g49800.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr3g098240.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204278.1.S1_x_at	A	A1TS	POPTR_0004s17390	POPTR_0004s17390 (11)	scaffold_4:17607282-17607511(-) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT1G21980.1	phosphatidylinositol-4-phosphate 5-kinase 1 	LOC_Os03g49800.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr3g098240.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204279.1.S1_at	A	A1TS	POPTR_0004s17410	POPTR_0004s17410 (11)	scaffold_4:17619701-17620524(+) (11)	NA	Q8LE10	HVA22-like protein i	AT5G42560.1	"Abscisic acid-responsive (TB2/DP1, HVA22) family protein "	LOC_Os03g14610.1	"HVA22, putative, expressed"	Medtr3g156300.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204280.1.S1_at	A	A1TS	POPTR_0004s17430	POPTR_0004s17430 (11)	scaffold_4:17627959-17628488(-) (11)	NA	Q9XF59	Aquaporin PIP1-2	AT3G61430.2	plasma membrane intrinsic protein 1A 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr5g089400.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.204281.1.S1_at	A	A1TS	POPTR_0004s17440	POPTR_0004s17440 (11)	scaffold_4:17643309-17644248(+) (11)	NA	Q60E70	COBRA-like protein 3	AT3G29810.1	COBRA-like protein 2 precursor 	LOC_Os05g32110.3	"COBRA, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204282.1.S1_at	A	A1TS	POPTR_0004s17460	POPTR_0004s17460 (11)	scaffold_4:17653648-17654135(+) (11)	NA	Q9FUB7	Chalcone synthase	AT4G34850.1	Chalcone and stilbene synthase family protein 	LOC_Os07g22850.1	"chalcone and stilbene synthases, putative, expressed"	Medtr4g108490.1	"Chalcone and stilbene synthases, C-terminal "	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004315|3-oxoacyl-[acyl-carrier-protein] synthase activity	NA
PtpAffx.204283.1.S1_at	A	A1TS	POPTR_0004s17510	POPTR_0004s17510 (11)	scaffold_4:17686705-17687022(-) (11)	NA	NA	NA	AT5G42146.1	unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g163250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204284.1.S1_at	A	A1TS	POPTR_0004s17570	POPTR_0004s17570 (11)	scaffold_4:17714408-17715473(+) (11)	NA	Q8H110	Protein XAP5 CIRCADIAN TIMEKEEPER	AT2G21150.1	XAP5 family protein 	LOC_Os09g36480.1	"XAP5 family protein, putative, expressed"	Medtr4g157300.1	XAP5 protein 	NA	NA	GO:0005634|nucleus
PtpAffx.204285.1.S1_at	A	A1TS	POPTR_0004s17590	POPTR_0004s17590 (11)	scaffold_4:17727530-17727586(+) (11)	NA	NA	NA	AT4G38770.1	proline-rich protein 4 	LOC_Os10g05750.1	"POEI3 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr4g100690.1	Protein of unknown function DUF1210 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204285.1.S1_s_at	A	A1TS	POPTR_0004s17590	POPTR_0004s17590 (11)	scaffold_4:17727623-17728433(+) (11)	NA	NA	NA	AT4G38770.1	proline-rich protein 4 	LOC_Os10g05750.1	"POEI3 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr4g100690.1	Protein of unknown function DUF1210 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204286.1.S1_at	A	A1TS	POPTR_0004s17620	POPTR_0004s17620 (11)	scaffold_4:17746999-17748613(+) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT2G21120.1	Protein of unknown function (DUF803) 	LOC_Os05g35570.1	"DUF803 domain containing, putative, expressed"	Medtr4g144260.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.204287.1.S1_at	A	A1TS	POPTR_0004s17660	POPTR_0004s17660 (11)	scaffold_4:17768859-17769641(+) (11)	NA	Q9URY4	Putative amidase C869.01	AT4G34880.1	Amidase family protein 	LOC_Os04g10530.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.204288.1.S1_at	A	A1TS	POPTR_0004s17680	POPTR_0004s17680 (11)	scaffold_4:17785679-17786476(+) (11)	NA	Q9URY4	Putative amidase C869.01	AT4G34880.1	Amidase family protein 	LOC_Os04g10530.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.204289.1.S1_at	A	A1MS	POPTR_0004s17700	POPTR_0004s17700 (10)	scaffold_4:17788206-17789063(+) (10)	NA	NA	NA	AT4G34880.1	Amidase family protein 	LOC_Os06g16030.1	"amidase family protein, putative, expressed"	Medtr4g147350.1	Amidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204290.1.S1_at	A	A1TS	POPTR_0320s00210	POPTR_0320s00210 (10)	scaffold_320:7948-8259(-) (10)//scaffold_4:17799265-17799576(+) (10)	NA	Q9URY4	Putative amidase C869.01	AT4G34880.1	Amidase family protein 	LOC_Os04g10530.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.204291.1.S1_at	A	A1TS	POPTR_0004s17730	POPTR_0004s17730 (10)	scaffold_4:17803543-17804069(-) (11)	NA	P41892	Cell division control protein 7	AT3G50310.1	mitogen-activated protein kinase kinase kinase 20 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204292.1.S1_at	A	A1TS	POPTR_0004s17750	POPTR_0004s17750 (11)	scaffold_4:17813459-17814677(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204293.1.S1_at	A	A1MS	POPTR_0004s17760	POPTR_0004s17760 (9)	scaffold_4:17823793-17824222(+) (11)	NA	Q9SKQ4	Pentatricopeptide repeat-containing protein At2g21090	AT2G21090.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g39910.1	"pentatricopeptide repeat domain containing protein, putative"	Medtr7g080560.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204294.1.S1_at	A	A1TS	POPTR_0004s17820	POPTR_0004s17820 (11)	scaffold_4:17851705-17852321(-) (11)	NA	NA	NA	AT2G21840.1	Cysteine/Histidine-rich C1 domain family protein 	NA	NA	NA	NA	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.204295.1.S1_at	A	A1TS	POPTR_0004s17830	POPTR_0004s17830 (11)	scaffold_4:17868956-17869376(+) (11)	NA	NA	NA	AT4G34940.1	armadillo repeat only 1 	LOC_Os09g36550.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g022170.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204297.1.S1_at	A	A1TS	POPTR_0004s17870	POPTR_0004s17870 (11)	scaffold_4:17917356-17918082(+) (11)	NA	NA	NA	AT2G24960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g28710.1	"transposon protein, putative, CACTA, En/Spm sub-class"	Medtr5g022470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204298.1.S1_at	A	A1TS	POPTR_0004s17880	POPTR_0004s17880 (11)	scaffold_4:17919878-17920317(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204299.1.S1_at	A	A1TS	POPTR_0004s17900	POPTR_0004s17900 (9)	scaffold_4:17940889-17941549(-) (9)	NA	P26514	"Endo-1,4-beta-xylanase A"	AT4G38650.1	Glycosyl hydrolase family 10 protein 	LOC_Os03g14010.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr3g163350.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.2043.1.S1_a_at	A	A2TS	POPTR_0008s13960	POPTR_0008s13960 (11)//POPTR_0010s11180 (11)	scaffold_10:11523668-11523800(+) (11)//scaffold_8:9205119-9205251(-) (11)	NA	NA	NA	AT2G01930.2	basic pentacysteine1 	LOC_Os10g02620.1	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2043.1.S1_at	A	A1TS	POPTR_0010s11180	POPTR_0010s11180 (11)	scaffold_10:11523639-11523953(+) (11)	NA	NA	NA	AT2G01930.2	basic pentacysteine1 	LOC_Os10g02584.3	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2043.2.A1_at	A	A1TS	POPTR_0008s13960	POPTR_0008s13960 (11)	scaffold_8:9204900-9205340(-) (11)	NA	NA	NA	AT2G01930.2	basic pentacysteine1 	LOC_Os10g02620.1	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204302.1.S1_at	A	A1TS	POPTR_0004s17990	POPTR_0004s17990 (11)	scaffold_4:18014349-18014548(+) (11)	NA	P69322	Polyubiquitin	AT4G05320.6	polyubiquitin 10 	LOC_Os06g46770.5	"ubiquitin family protein, putative, expressed"	Medtr4g110760.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204303.1.S1_at	A	A1TS	POPTR_0004s18010	POPTR_0004s18010 (10)	scaffold_4:18029532-18030264(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204304.1.S1_at	A	A1TS	POPTR_0004s18040	POPTR_0004s18040 (9)	scaffold_4:18046343-18049586(-) (11)	NA	NA	NA	AT2G20990.3	synaptotagmin A 	LOC_Os01g60350.1	hypothetical protein	Medtr1g031480.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204305.1.S1_at	A	A1TS	POPTR_0004s18060	POPTR_0004s18060 (11)	scaffold_4:18065154-18065566(+) (11)	NA	Q6WWW4	E3 ubiquitin-protein ligase UPL3	AT4G38600.1	HEAT repeat ;HECT-domain (ubiquitin-transferase) 	LOC_Os02g01170.1	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.204306.1.S1_at	A	A1TS	POPTR_0004s18070	POPTR_0004s18070 (11)	scaffold_4:18076672-18077452(-) (11)	NA	Q9SCU9	Beta-galactosidase 13	AT2G16730.1	glycosyl hydrolase family 35 protein 	LOC_Os08g43570.1	"beta-galactosidase precursor, putative, expressed"	Medtr4g098560.1	"D-galactoside/L-rhamnose binding SUEL lectin; Glycoside hydrolase, family 35 "	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204307.1.S1_at	A	A1TS	POPTR_0004s18210	POPTR_0004s18210 (11)	scaffold_4:18184690-18185526(+) (11)	NA	Q9ZVX1	Probable ubiquitin-conjugating enzyme E2 23	AT2G16920.1	ubiquitin-conjugating enzyme 23 	LOC_Os01g03520.1	"ubiquitin conjugating enzyme protein, putative, expressed"	Medtr2g017250.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.204308.1.S1_at	A	A1TS	POPTR_0004s18220	POPTR_0004s18220 (11)	scaffold_4:18195515-18196058(+) (11)	NA	NA	NA	AT2G16900.1	Arabidopsis phospholipase-like protein (PEARLI 4) family 	LOC_Os06g49700.2	expressed protein	Medtr3g163550.1	Arabidopsis phospholipase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204309.1.S1_at	A	A1TS	POPTR_0004s18230	POPTR_0004s18230 (11)	scaffold_4:18203577-18203703(+) (11)	NA	Q28G05	Pre-mRNA-splicing factor syf2	AT2G16860.1	GCIP-interacting family protein 	LOC_Os06g49740.1	"pre-mRNA-splicing factor syf2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204310.1.S1_at	A	A1TS	POPTR_0004s18250	POPTR_0004s18250 (11)	scaffold_4:18211226-18212647(-) (11)	NA	Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G47900.1	Protein of unknown function (DUF1624) 	LOC_Os02g32504.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr3g163510.1	"Heparan-alpha-glucosaminide N-acetyltransferase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204311.1.S1_at	A	A1TS	POPTR_0004s18280	POPTR_0004s18280 (11)	scaffold_4:18225114-18225715(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204312.1.S1_s_at	A	A2TS	POPTR_0004s18290	POPTR_0004s18310 (11)//POPTR_0004s18290 (11)	scaffold_4:18233987-18234354(-) (11)//scaffold_4:18238280-18238647(-) (11)	NA	P86491	6-hydroxynicotinate 3-monooxygenase	AT5G05320.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g05920.1	expressed protein	Medtr5g013360.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204314.1.S1_at	A	A1TS	POPTR_0004s18320	POPTR_0004s18320 (11)	scaffold_4:18243888-18244279(-) (11)	NA	Q14498	RNA-binding protein 39	AT2G16940.2	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.204315.1.S1_at	A	A1TS	POPTR_0004s18350	POPTR_0004s18350 (11)	scaffold_4:18291056-18291245(+) (11)	NA	NA	NA	AT4G39790.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37040.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr4g140290.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204315.1.S1_s_at	A	A1TS	POPTR_0004s18350	POPTR_0004s18350 (11)	scaffold_4:18290744-18291053(+) (11)	NA	NA	NA	AT4G39790.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37040.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr4g140290.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204316.1.S1_at	A	A1MS	POPTR_0004s18390	POPTR_0004s18390 (10)	scaffold_4:18299248-18299710(+) (10)	NA	P80093	"Phytoene dehydrogenase, chloroplastic/chromoplastic"	AT4G14210.1	phytoene desaturase 3 	LOC_Os04g47290.2	"amine oxidase, putative, expressed"	Medtr1g096350.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.204317.1.S1_at	A	A1TS	POPTR_0004s18410	POPTR_0004s18410 (11)	scaffold_4:18313634-18314764(-) (11)	NA	NA	NA	AT4G38500.1	Protein of unknown function (DUF616) 	LOC_Os06g50860.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr4g134220.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204318.1.S1_at	A	A1TS	POPTR_0004s18440	POPTR_0004s18440 (11)	scaffold_4:18339323-18340305(-) (11)	NA	Q9LU89	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g47790.3	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.204320.1.S1_at	A	A1TS	POPTR_0004s18470	POPTR_0004s18470 (11)	scaffold_4:18350456-18351011(-) (11)	NA	O49619	"Pentatricopeptide repeat-containing protein At4g35130, chloroplastic"	AT4G35130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04390.1	"pentatricopeptide, putative, expressed"	Medtr4g134960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204321.1.S1_at	A	A1TS	POPTR_0004s18490	POPTR_0004s18490 (10)	scaffold_4:18359147-18359962(+) (11)	NA	Q8W595	Histone-lysine N-methyltransferase SUVR4	AT3G04380.1	SET-domain containing protein lysine methyltransferase family protein 	LOC_Os02g40770.2	"SET domain containing protein, expressed"	Medtr1g093770.1	Pre-SET; Histone H3-K9 methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204322.1.S1_at	A	A1TS	POPTR_0004s18500	POPTR_0004s18500 (11)	scaffold_4:18360574-18360879(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204323.1.S1_at	A	A1TS	POPTR_0004s18510	POPTR_0004s18510 (11)	scaffold_4:18370557-18371984(+) (11)	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16970.1	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204324.1.S1_at	A	A1MS	POPTR_0004s18520	POPTR_0004s18520 (10)	scaffold_4:18374112-18375495(-) (10)	NA	Q5TAQ9	DDB1- and CUL4-associated factor 8	AT4G35140.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g39760.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g111430.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204325.1.S1_at	A	A1TS	POPTR_0004s18530	POPTR_0004s18530 (11)	scaffold_4:18383396-18384172(+) (11)	NA	Q9SYM1	Uncharacterized mscS family protein At1g78610	AT1G78610.1	mechanosensitive channel of small conductance-like 6 	LOC_Os02g44770.1	"uncharacterized mscS family protein, putative, expressed"	Medtr1g143150.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.204326.1.S1_at	A	A1TS	POPTR_0004s18540	POPTR_0004s18540 (11)	scaffold_4:18397896-18398307(+) (11)	NA	Q9FKS4	Serine/threonine-protein kinase ATR	AT5G40820.1	Ataxia telangiectasia-mutated and RAD3-related 	LOC_Os06g50910.3	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr1g143100.1	Protein kinase-like; UME 	NA	GO:0004674|protein serine/threonine kinase activity	NA
PtpAffx.204326.1.S1_s_at	A	A1TS	POPTR_0004s18540	POPTR_0004s18540 (11)	scaffold_4:18397534-18398220(+) (11)	NA	Q9FKS4	Serine/threonine-protein kinase ATR	AT5G40820.1	Ataxia telangiectasia-mutated and RAD3-related 	LOC_Os06g50910.3	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr1g143100.1	Protein kinase-like; UME 	NA	GO:0004674|protein serine/threonine kinase activity	NA
PtpAffx.204328.1.S1_x_at	A	A1TS	POPTR_0004s18570	POPTR_0004s18570 (11)	scaffold_4:18417937-18421276(-) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g092470.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204329.1.S1_s_at	A	A4TS	POPTR_0004s18550	POPTR_1924s00200 (11)//POPTR_0004s18590 (11)//POPTR_0004s18550 (11)//POPTR_0009s14130 (11)	scaffold_1924:2272-2583(-) (11)//scaffold_4:18404037-18404334(-) (11)//scaffold_4:18434890-18435185(-) (11)//scaffold_9:11136512-11136872(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204330.1.S1_at	A	A1TS	POPTR_0004s18600	POPTR_0004s18600 (11)	scaffold_4:18442733-18443238(-) (11)	NA	Q9SDA8	F-box/LRR-repeat protein 10	AT2G17020.1	F-box/RNI-like superfamily protein 	LOC_Os03g04270.1	"OsFBL10 - F-box domain and LRR containing protein, expressed"	Medtr1g143330.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.204331.1.S1_at	A	A1TS	POPTR_0004s18770	POPTR_0004s18770 (11)	scaffold_4:18524374-18524920(-) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47420.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g023220.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204332.1.S1_at	A	A1MS	POPTR_0004s18710	POPTR_0004s18710 (11)	scaffold_4:18502414-18502716(+) (11)	NA	NA	NA	AT5G39130.1	RmlC-like cupins superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204333.1.S1_at	A	A1TS	POPTR_0004s18720	POPTR_0004s18720 (11)	scaffold_4:18503210-18503981(-) (11)	NA	Q5PNZ0	GDSL esterase/lipase At5g18430	AT5G18430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g088830.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.204334.1.S1_at	A	A1TS	POPTR_0004s18750	POPTR_0004s18750 (11)	scaffold_4:18517654-18518145(+) (11)	NA	O22265	"Signal recognition particle 43 kDa protein, chloroplastic"	AT2G47450.1	chloroplast signal recognition particle component (CAO) 	LOC_Os03g03990.1	"signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed"	NA	NA	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.204334.1.S1_x_at	A	A1TS	POPTR_0004s18750	POPTR_0004s18750 (11)	scaffold_4:18517654-18518145(+) (11)	NA	O22265	"Signal recognition particle 43 kDa protein, chloroplastic"	AT2G47450.1	chloroplast signal recognition particle component (CAO) 	LOC_Os03g03990.1	"signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed"	NA	NA	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.204335.1.S1_at	A	A1TS	POPTR_0004s18790	POPTR_0004s18790 (11)	scaffold_4:18540681-18541333(-) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47420.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g023220.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204336.1.S1_at	A	A1TS	POPTR_0004s18800	POPTR_0004s18800 (11)	scaffold_4:18549667-18549828(-) (11)	NA	NA	NA	AT5G27780.1	SAUR-like auxin-responsive protein family  	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204337.1.S1_at	A	A1TS	POPTR_0004s18810	POPTR_0004s18810 (11)	scaffold_4:18561028-18561361(-) (11)	NA	NA	NA	AT1G29420.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37400.1	OsSAUR45 - Auxin-responsive SAUR gene family member	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204339.1.S1_at	A	A1TS	POPTR_0004s18830	POPTR_0004s18830 (11)	scaffold_4:18568125-18570032(+) (11)	NA	B9HQZ6	"Probable alanyl-tRNA synthetase, chloroplastic"	AT5G22800.1	"Alanyl-tRNA synthetase, class IIc "	LOC_Os06g13660.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr3g163940.1	"Alanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204340.1.S1_at	A	A1TS	POPTR_0004s18850	POPTR_0004s18850 (10)	scaffold_4:18589607-18589733(+) (10)	NA	Q8LBB7	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5	AT4G35190.1	Putative lysine decarboxylase family protein 	LOC_Os02g41770.1	"uncharacterized protein PA4923, putative"	Medtr7g121720.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204340.1.S1_s_at	A	A1TS	POPTR_0004s18850	POPTR_0004s18850 (11)	scaffold_4:18588682-18588907(+) (11)	NA	Q8LBB7	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5	AT4G35190.1	Putative lysine decarboxylase family protein 	LOC_Os02g41770.1	"uncharacterized protein PA4923, putative"	Medtr7g121720.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204341.1.S1_at	A	A2TS	POPTR_0004s18890	POPTR_0004s19280 (11)//POPTR_0004s18890 (11)	scaffold_4:18630143-18630428(-) (11)//scaffold_4:19167045-19167330(-) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43980.1	"carrier, putative"	Medtr4g096120.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204342.1.S1_at	A	A2TS	POPTR_0004s18900	POPTR_0004s19290 (11)//POPTR_0004s18900 (11)	scaffold_4:18638742-18639171(+) (11)//scaffold_4:19175095-19175602(+) (11)	NA	P29031	Acidic endochitinase WIN6.2B	AT2G17070.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os03g30470.1	"CHIT4 - Chitinase family protein precursor, expressed"	Medtr4g096120.1	Arabidopsis conserved protein 	NA	GO:0008061|chitin binding	NA
PtpAffx.204343.1.S1_at	A	A1TS	POPTR_0004s19300	POPTR_0004s19300 (11)	scaffold_4:19177995-19178389(+) (11)	NA	NA	NA	AT2G17070.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43960.1	"carrier, putative, expressed"	Medtr4g096140.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204344.1.S1_at	A	A1TS	POPTR_0004s19320	POPTR_0004s19320 (11)	scaffold_4:19189625-19190086(+) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os11g06100.1	"carrier, putative, expressed"	Medtr4g096140.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204344.1.S1_x_at	A	A1TS	POPTR_0004s19320	POPTR_0004s19320 (11)	scaffold_4:19189523-19190086(+) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os11g06100.1	"carrier, putative, expressed"	Medtr4g096140.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204345.1.S1_at	A	A1TS	POPTR_0004s19330	POPTR_0004s19330 (11)	scaffold_4:19194089-19194597(+) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os11g06110.1	"carrier, putative, expressed"	Medtr4g096140.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204346.1.S1_at	A	A1TS	POPTR_0004s19350	POPTR_0004s19350 (11)	scaffold_4:19208232-19208517(-) (11)	NA	NA	NA	AT4G35240.2	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37520.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204347.1.S1_at	A	A1TS	POPTR_0004s19390	POPTR_0004s19390 (11)	scaffold_4:19237073-19237516(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G76270.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr5g106640.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204347.1.S1_s_at	A	A1TS	POPTR_0004s19390	POPTR_0004s19390 (11)	scaffold_4:19236732-19237070(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G76270.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr5g106640.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204348.1.S1_at	A	A1TS	POPTR_0004s19400	POPTR_0004s19400 (11)	scaffold_4:19254105-19254279(+) (11)	NA	Q4V8J4	Glycerol-3-phosphate acyltransferase 3	AT5G60620.1	glycerol-3-phosphate acyltransferase 9 	LOC_Os07g34730.1	"acyltransferase, putative, expressed"	Medtr8g129160.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.204349.1.S1_at	A	A1TS	POPTR_0004s19430	POPTR_0004s19430 (11)	scaffold_4:19267579-19267918(+) (11)	NA	NA	NA	AT4G38380.1	MATE efflux family protein 	LOC_Os09g37610.1	"MATE efflux protein, putative, expressed"	Medtr5g106650.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.204350.1.S1_at	A	A1TS	POPTR_0004s19441	POPTR_0004s19441 (11)	scaffold_4:19272768-19273420(-) (11)	NA	Q5R5S4	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204351.1.S1_at	A	A1MS	POPTR_0004s19480	POPTR_0004s19480 (9)	scaffold_4:19314093-19314780(+) (9)	NA	Q1SGF1	Putative poly [ADP-ribose] polymerase 3	AT5G22470.1	NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases 	LOC_Os02g32860.1	"poly synthetase 3, putative, expressed"	Medtr4g069780.1	BRCT 	NA	GO:0003950|NAD+ ADP-ribosyltransferase activity	NA
PtpAffx.204352.1.S1_at	A	A1TS	POPTR_0004s19490	POPTR_0004s19490 (11)	scaffold_4:19316397-19316880(-) (11)	NA	P54751	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1"	AT1G08280.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os01g63970.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g069790.1	"Glycosyl transferase, family 29; Immunoglobulin/major histocompatibility complex "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.204353.1.S1_at	A	A1TS	POPTR_0004s19510	POPTR_0004s19510 (11)	scaffold_4:19331712-19332887(-) (11)	NA	NA	NA	AT2G27590.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g63950.1	expressed protein	Medtr4g069890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204354.1.S1_at	A	A1TS	POPTR_0004s19560	POPTR_0004s19560 (11)	scaffold_4:19363727-19364202(-) (11)	NA	Q9ZUW3	Pentatricopeptide repeat-containing protein At2g27610	AT2G27610.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g38190.2	"pentatricopeptide, putative"	AC235092_12.1	Aldo/keto reductase AC235092.1 69694-72297 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204355.1.S1_at	A	A1TS	POPTR_0004s19560	POPTR_0004s19560 (11)	scaffold_4:19365276-19365814(-) (11)	NA	Q9ZUW3	Pentatricopeptide repeat-containing protein At2g27610	AT2G27610.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g38190.2	"pentatricopeptide, putative"	AC235092_12.1	Aldo/keto reductase AC235092.1 69694-72297 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204356.1.S1_at	A	A1TS	POPTR_0004s19570	POPTR_0004s19570 (11)	scaffold_4:19373703-19375422(+) (11)	NA	Q652L2	Protein HIRA	AT3G44530.2	homolog of histone chaperone HIRA 	LOC_Os09g39420.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC235092_11.1	TUP1-like enhancer of split AC235092.1 68028-61680 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.204357.1.S1_at	A	A1TS	POPTR_0004s19580	POPTR_0004s19580 (11)	scaffold_4:19384220-19384921(+) (11)	NA	Q93ZB9	Fatty acyl-CoA reductase 3	AT4G33790.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20436.1.S1_s_at	A	A1TS	POPTR_0015s13140	POPTR_0015s13140 (11)	scaffold_15:13215785-13216309(-) (11)	NA	NA	NA	AT5G52280.1	Myosin heavy chain-related protein 	LOC_Os10g36060.1	"protein transport protein-related, putative, expressed"	Medtr5g010660.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.204360.1.S1_at	A	A1TS	POPTR_0009s17180	POPTR_0009s17180 (11)	scaffold_9:12908865-12909898(-) (11)	NA	P93025	Phototropin-2	AT5G58140.1	phototropin 2 	LOC_Os04g23890.3	"AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204360.1.S1_x_at	A	A1TS	POPTR_0009s17180	POPTR_0009s17180 (11)	scaffold_9:12908865-12912110(-) (11)	NA	P93025	Phototropin-2	AT5G58140.1	phototropin 2 	LOC_Os04g23890.3	"AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204361.1.S1_at	A	A1TS	POPTR_0009s17150	POPTR_0009s17150 (11)	scaffold_9:12899024-12899600(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204362.1.S1_at	A	A1TS	POPTR_0009s17130	POPTR_0009s17130 (11)	scaffold_9:12893829-12895209(+) (11)	NA	NA	NA	AT4G02410.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os08g40270.1	"lectin-like protein kinase, putative"	Medtr5g024990.1	Concanavalin A-like lectin/glucanase; Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204363.1.S1_at	A	A1TS	POPTR_0009s17100	POPTR_0009s17100 (11)	scaffold_9:12880770-12881344(+) (11)	NA	Q9SZL9	Cellulose synthase-like protein D4	AT4G38190.1	cellulose synthase like D4 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr1g047100.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity||GO:0008270|zinc ion binding	GO:0016020|membrane
PtpAffx.204364.1.S1_at	A	A1TS	POPTR_0009s17090	POPTR_0009s17090 (11)	scaffold_9:12868448-12868930(+) (11)	NA	O64966	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g024810.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
PtpAffx.204365.1.S1_at	A	A1TS	POPTR_0009s17070	POPTR_0009s17070 (11)	scaffold_9:12850610-12851884(+) (11)	NA	Q9FEA2	"Glutamyl-tRNA synthetase, chloroplastic/mitochondrial"	AT5G64050.1	glutamate tRNA synthetase 	LOC_Os02g02860.1	"glutamyl-tRNA synthetase, putative, expressed"	Medtr1g103230.1	"Glutamyl-tRNA synthetase, class Ic; Glutaminyl-tRNA synthetase; Glutathione S-transferase, C-terminal-like "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.204366.1.S1_at	A	A1TS	POPTR_0009s17060	POPTR_0009s17060 (11)	scaffold_9:12843950-12844579(-) (11)	NA	Q9STF9	Pentatricopeptide repeat-containing protein At3g46870	AT5G09320.1	Vacuolar sorting protein 9 (VPS9) domain 	LOC_Os04g39970.1	"vacuolar sorting protein 9 domain-containing protein, putative, expressed"	Medtr8g015160.1	"Tha8, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204367.1.S1_at	A	A1TS	POPTR_0009s17030	POPTR_0009s17030 (10)	scaffold_9:12832626-12832846(-) (10)	NA	Q99JW2	Aminoacylase-1	AT4G38220.1	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046680.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.204367.1.S1_s_at	A	A1TS	POPTR_0009s17030	POPTR_0009s17030 (11)	scaffold_9:12832699-12833400(-) (11)	NA	Q99JW2	Aminoacylase-1	AT4G38220.1	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046680.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.204369.1.S1_at	A	A1TS	POPTR_0009s16950	POPTR_0009s16950 (11)	scaffold_9:12789910-12790710(+) (11)	NA	Q93YT1	Glutamate receptor 3.2	AT4G35290.1	glutamate receptor 2 	LOC_Os04g49570.2	"glutamate receptor, putative, expressed"	Medtr3g160070.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.204370.1.S1_at	A	A1TS	POPTR_0009s16940	POPTR_0009s16940 (11)	scaffold_9:12778621-12779130(+) (11)	NA	Q9FKV1	Probable anion transporter 5	AT5G44370.1	phosphate transporter 4;6 	LOC_Os12g07970.3	"transporter, major facilitator family, putative, expressed"	Medtr4g032030.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204371.1.S1_at	A	A1TS	POPTR_0009s16930	POPTR_0009s16930 (11)	scaffold_9:12774527-12776109(+) (11)	NA	Q6NU91	Nucleolar complex protein 4 homolog B	AT2G17250.1	CCAAT-binding factor 	LOC_Os04g49580.1	"nucleolar complex protein, putative, expressed"	Medtr5g086460.1	CBF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204372.1.S1_s_at	A	A1TS	POPTR_0009s16920	POPTR_0009s16920 (11)	scaffold_9:12768849-12770032(+) (11)	NA	Q9XGM8	"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase"	AT4G38240.2	"alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative "	LOC_Os02g58590.1	"N-acetylglucosaminyltransferase I, putative, expressed"	Medtr3g164080.1	"Glycosyl transferase, family 13 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003827|""alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity"""	GO:0000139|Golgi membrane
PtpAffx.204373.1.S1_at	A	A1TS	POPTR_0009s16890	POPTR_0009s16890 (11)	scaffold_9:12753806-12754284(-) (11)	NA	NA	NA	AT2G23240.2	"Plant EC metallothionein-like protein, family 15 "	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.204373.1.S1_x_at	A	A1TS	POPTR_0009s16890	POPTR_0009s16890 (11)	scaffold_9:12753783-12754260(-) (11)	NA	NA	NA	AT2G23240.2	"Plant EC metallothionein-like protein, family 15 "	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.204374.1.S1_at	A	A1TS	POPTR_0009s16880	POPTR_0009s16880 (11)	scaffold_9:12748984-12750297(+) (11)	NA	A4FVJ7	UPF0712 protein C7orf64 homolog	AT2G27790.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g01480.1	"nucleic acid binding protein, putative, expressed"	Medtr5g085610.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204375.1.S1_at	A	A1TS	POPTR_0009s16870	POPTR_0009s16870 (11)	scaffold_9:12743326-12743793(-) (11)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT1G20670.1	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr3g069040.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204377.1.S1_at	A	A1TS	POPTR_0009s16820	POPTR_0009s16820 (11)	scaffold_9:12692527-12692715(+) (11)	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204377.1.S1_s_at	A	A1TS	POPTR_0009s16820	POPTR_0009s16820 (11)	scaffold_9:12692711-12693117(+) (11)	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204378.1.S1_at	A	A1TS	POPTR_0009s16800	POPTR_0009s16800 (11)	scaffold_9:12681009-12681504(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204380.1.S1_at	A	A1TS	POPTR_0009s16790	POPTR_0009s16790 (11)	scaffold_9:12677627-12677901(+) (11)	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204380.1.S1_x_at	A	A1TS	POPTR_0009s16790	POPTR_0009s16790 (11)	scaffold_9:12677627-12678010(+) (11)	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204381.1.S1_at	A	A1TS	POPTR_0009s16780	POPTR_0009s16780 (9)	scaffold_9:12668643-12668807(+) (11)	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os09g37710.2	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204382.1.S1_at	A	A1TS	POPTR_0009s16770	POPTR_0009s16770 (11)	scaffold_9:12665789-12666369(+) (11)	NA	NA	NA	AT4G35280.1	C2H2-like zinc finger protein 	LOC_Os07g39960.1	ZOS7-07 - C2H2 zinc finger protein	Medtr5g106680.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.204383.1.S1_s_at	A	A1TS	POPTR_0009s16750	POPTR_0009s16750 (11)	scaffold_9:12658951-12659292(+) (11)	NA	Q9UMX0	Ubiquilin-1	AT2G17200.1	ubiquitin family protein 	LOC_Os10g39620.2	"ubiquitin family protein, putative, expressed"	Medtr5g023730.1	UV excision repair protein Rad23; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204384.1.S1_at	A	A1TS	POPTR_0009s16740	POPTR_0009s16740 (11)	scaffold_9:12654360-12654803(+) (11)	NA	Q681N2	U-box domain-containing protein 15	AT5G42340.1	Plant U-Box 15 	LOC_Os08g37570.1	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.204386.1.S1_at	A	A1TS	POPTR_0009s16710	POPTR_0009s16710 (11)	scaffold_9:12638423-12639262(-) (11)	NA	Q5RET6	Transmembrane protein 184C	AT4G38360.2	Protein of unknown function (DUF300) 	LOC_Os06g51100.2	"transmembrane protein, putative, expressed"	Medtr3g164030.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204388.1.S1_at	A	A1TS	POPTR_0009s16690	POPTR_0009s16690 (11)	scaffold_9:12629193-12629763(-) (11)	NA	Q9SL48	SEC1 family transport protein SLY1	AT2G17980.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os03g42320.1	"Sec1 family transport protein, putative, expressed"	AC233560_16.1	Sec1-like protein AC233560.2 38842-41210 E EGN_Mt090430 200	GO:0006904|vesicle docking during exocytosis	NA	NA
PtpAffx.204389.1.S1_at	A	A1TS	POPTR_0009s16650	POPTR_0009s16650 (11)	scaffold_9:12602752-12603710(-) (11)	NA	NA	NA	AT3G48410.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g05600.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204390.1.S1_at	A	A1TS	POPTR_0009s16620	POPTR_0009s16620 (11)	scaffold_9:12596208-12597117(-) (11)	NA	NA	NA	AT3G44510.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g05600.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107920.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204391.1.S1_at	A	A1TS	POPTR_0009s16610	POPTR_0009s16610 (11)	scaffold_9:12589900-12591232(-) (11)	NA	Q8RYD6	ABSCISIC ACID-INSENSITIVE 5-like protein 1	AT3G44460.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g64000.1	"bZIP transcription factor, putative, expressed"	Medtr2g107890.1	hypothetical protein 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.204392.1.S1_at	A	A1TS	POPTR_0009s16590	POPTR_0009s16590 (11)	scaffold_9:12571527-12574725(+) (11)	NA	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT1G08320.3	bZIP transcription factor family protein 	LOC_Os01g64020.1	"transcription factor, putative, expressed"	Medtr4g070060.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.204393.1.S1_at	A	A1TS	POPTR_0009s16580	POPTR_0009s16580 (11)	scaffold_9:12559300-12559672(+) (11)	NA	Q9ZW88	F-box/LRR-repeat protein At1g67190	AT1G67190.2	F-box/RNI-like superfamily protein 	LOC_Os01g64030.4	"OsFBL5 - F-box domain and LRR containing protein, expressed"	Medtr4g070040.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204395.1.S1_at	A	A1TS	POPTR_0009s16550	POPTR_0009s16550 (11)	scaffold_9:12544269-12544640(-) (11)	NA	NA	NA	AT3G52740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g33610.1	expressed protein	Medtr7g127310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204396.1.S1_at	A	A1TA	POPTR_0009s16550	POPTR_0009s16550 (9)	scaffold_9:12543100-12543677(+) (11)	NA	NA	NA	AT3G52740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g33610.1	expressed protein	Medtr7g127310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204398.1.S1_at	A	A1TS	POPTR_0009s16450	POPTR_0009s16450 (11)	scaffold_9:12491180-12491945(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204399.1.S1_s_at	A	A1TS	POPTR_0009s16430	POPTR_0009s16430 (11)	scaffold_9:12480830-12481343(-) (11)	NA	NA	NA	AT5G22390.1	Protein of unknown function (DUF3049) 	LOC_Os11g05550.1	expressed protein	Medtr2g107690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204400.1.S1_at	A	A1TS	POPTR_0009s16360	POPTR_0009s16360 (11)	scaffold_9:12455782-12457932(-) (11)	NA	Q9LVA2	Pentatricopeptide repeat-containing protein At5g62370	AT5G62370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g14530.3	"PPR repeat containing protein, expressed"	Medtr5g102690.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204401.1.S1_at	A	A1TS	POPTR_0009s16350	POPTR_0009s16350 (11)	scaffold_9:12446855-12447820(-) (11)	NA	O35261	Transcription factor E2F3	AT5G22220.2	E2F transcription factor 1 	LOC_Os12g06200.1	"E2F family transcription factor protein, putative, expressed"	AC146557_13.1	Winged helix repressor DNA-binding AC146557.33 75654-81329 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
PtpAffx.204402.1.S1_at	A	A1TS	POPTR_0009s16320	POPTR_0009s16320 (11)	scaffold_9:12437915-12438433(+) (11)	NA	NA	NA	AT5G04820.1	ovate family protein 13 	LOC_Os01g64410.1	"ATOFP18/OFP18, putative, expressed"	AC146630_8.1	Uncharacterized plant-specific domain AC146630.25 44746-43647 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204403.1.S1_at	A	A1TS	POPTR_0009s16290	POPTR_0009s16290 (9)	scaffold_9:12417491-12419793(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT2G27300.1	NTM1-like 8 	LOC_Os05g35170.2	"no apical meristem protein, putative, expressed"	Medtr2g107430.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204404.1.S1_at	A	A1TS	POPTR_0009s16280	POPTR_0009s16280 (11)	scaffold_9:12415568-12415948(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204405.1.S1_at	A	A1TS	POPTR_0009s16270	POPTR_0009s16270 (11)	scaffold_9:12413182-12413523(-) (11)	NA	NA	NA	AT4G16295.1	S-protein homologue 1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204406.1.S1_at	A	A1MS	POPTR_0009s16250	POPTR_0009s16250 (11)	scaffold_9:12408333-12408836(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT3G11590.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). 	LOC_Os04g31400.1	expressed protein	Medtr2g107440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204407.1.S1_at	A	A1TS	POPTR_0009s16231	POPTR_0009s16231 (9)	scaffold_9:12396847-12397420(+) (11)	NA	Q9XIN8	F-box protein At2g27310	AT2G27310.1	F-box family protein 	LOC_Os04g33820.1	"OsFBX132 - F-box domain containing protein, expressed"	Medtr2g107460.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204408.1.S1_at	A	A1TS	POPTR_0009s16210	POPTR_0009s16210 (11)	scaffold_9:12380548-12381365(-) (11)	NA	NA	NA	AT5G22340.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g20640.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204408.1.S1_s_at	A	A1TS	POPTR_0009s16210	POPTR_0009s16210 (11)	scaffold_9:12380800-12381402(-) (11)	NA	NA	NA	AT5G22340.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g20640.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20441.1.A1_at	A	A1TS	POPTR_0004s07050	POPTR_0004s07050 (11)	scaffold_4:5862321-5862552(-) (11)	NA	Q9FLX8	Probable WRKY transcription factor 27	AT5G52830.1	WRKY DNA-binding protein 27 	LOC_Os04g50920.1	"OsWRKY37 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g126350.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.204410.1.S1_s_at	A	A1TS	POPTR_0009s16170	POPTR_0009s16170 (10)	scaffold_9:12357891-12357966(+) (10)	NA	Q08BW0	OTU domain-containing protein 5-A	AT2G27350.2	OTU-like cysteine protease family protein 	LOC_Os04g33780.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr2g107500.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204410.1.S1_x_at	A	A1TS	POPTR_0009s16170	POPTR_0009s16170 (11)	scaffold_9:12357428-12358063(+) (11)	NA	Q08BW0	OTU domain-containing protein 5-A	AT2G27350.2	OTU-like cysteine protease family protein 	LOC_Os04g33780.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr2g107500.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204411.1.S1_at	A	A1TS	POPTR_0009s16160	POPTR_0009s16160 (11)	scaffold_9:12351091-12351714(+) (11)	NA	B9HQ42	UPF0497 membrane protein 7	AT2G27370.1	Uncharacterised protein family (UPF0497) 	LOC_Os06g12500.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr2g107550.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204413.1.S1_at	A	A1TS	POPTR_0009s16110	POPTR_0009s16110 (11)	scaffold_9:12322949-12323514(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204414.1.S1_at	A	A1TS	POPTR_0009s16080	POPTR_0009s16080 (11)	scaffold_9:12307564-12307687(-) (11)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20780.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.204416.1.S1_at	A	A1TS	POPTR_0009s16020	POPTR_0009s16020 (10)	scaffold_9:12268360-12268396(-) (10)	NA	Q9ZVD0	Serrate RNA effector molecule	AT2G27100.1	C2H2 zinc-finger protein SERRATE (SE) 	LOC_Os06g48530.1	"ZOS6-09 - C2H2 zinc finger protein, expressed"	Medtr8g047770.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204416.1.S1_x_at	A	A1TS	POPTR_0009s16020	POPTR_0009s16020 (11)	scaffold_9:12267619-12268665(-) (11)	NA	Q9ZVD0	Serrate RNA effector molecule	AT2G27100.1	C2H2 zinc-finger protein SERRATE (SE) 	LOC_Os06g48530.1	"ZOS6-09 - C2H2 zinc finger protein, expressed"	Medtr8g047770.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204417.1.S1_at	A	A1TS	POPTR_0009s16000	POPTR_0009s16000 (11)	scaffold_9:12254956-12255306(-) (11)	NA	NA	NA	AT5G21060.1	Glyceraldehyde-3-phosphate dehydrogenase-like family protein 	NA	NA	Medtr3g111270.1	Homoserine dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204418.1.S1_at	A	A1TS	POPTR_0009s15970	POPTR_0009s15970 (11)	scaffold_9:12241237-12241825(+) (11)	NA	NA	NA	AT5G21050.1	LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64090.1); Has 206 Blast hits to 206 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g51210.1	expressed protein	Medtr5g094760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204419.1.S1_at	A	A1TS	POPTR_0009s15950	POPTR_0009s15950 (11)	scaffold_9:12233843-12234952(-) (11)	NA	Q9FVV1	GDSL esterase/lipase At1g71250	AT4G10950.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os02g18870.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g094780.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.204420.1.S1_at	A	A1TS	POPTR_0009s15940	POPTR_0009s15940 (11)	scaffold_9:12232042-12232513(-) (11)	NA	Q9ZS34	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os01g16020.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204421.1.S1_at	A	A1TS	POPTR_0009s15920	POPTR_0009s15920 (11)	scaffold_9:12218760-12221006(-) (11)	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT2G02970.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os08g33850.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g044090.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.204425.1.S1_at	A	A1TS	POPTR_0009s15890	POPTR_0009s15890 (11)	scaffold_9:12201314-12201718(+) (11)	NA	Q652P9	Germin-like protein 9-3	AT1G02335.1	germin-like protein subfamily 2 member 2 precursor 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107660.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.204426.1.S1_at	A	A1TS	POPTR_0009s15810	POPTR_0009s15810 (11)	scaffold_9:12153841-12155909(-) (11)	NA	Q39054	Molybdopterin biosynthesis protein CNX1	AT5G20990.1	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) 	LOC_Os04g56620.1	"molybdopterin biosynthesis protein CNX1, putative, expressed"	Medtr5g094600.1	"Bifunctional molybdenum cofactor molybdenum incorporation/glycine receptor, gephyrin "	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.204427.1.S1_at	A	A1MA	POPTR_0009s15810	POPTR_0009s15810 (9)	scaffold_9:12150706-12151838(+) (10)	NA	Q39054	Molybdopterin biosynthesis protein CNX1	AT5G20990.1	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) 	LOC_Os04g56620.1	"molybdopterin biosynthesis protein CNX1, putative, expressed"	Medtr5g094600.1	"Bifunctional molybdenum cofactor molybdenum incorporation/glycine receptor, gephyrin "	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.204428.1.S1_at	A	A1TS	POPTR_0009s15800	POPTR_0009s15800 (11)	scaffold_9:12146530-12146999(-) (11)	NA	NA	NA	AT5G12230.1	MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g44010.2	"nucleolar protein NOP5, putative, expressed"	AC233651_17.1	"TRAF3-interacting protein 1, related AC233651.1 53447-51580 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204428.1.S1_s_at	A	A1TS	POPTR_0009s15800	POPTR_0009s15800 (11)	scaffold_9:12146996-12147050(-) (11)	NA	NA	NA	AT5G12230.1	MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g44010.2	"nucleolar protein NOP5, putative, expressed"	AC233651_17.1	"TRAF3-interacting protein 1, related AC233651.1 53447-51580 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204428.1.S1_x_at	A	A1TS	POPTR_0009s15800	POPTR_0009s15800 (11)	scaffold_9:12146532-12147051(-) (11)	NA	NA	NA	AT5G12230.1	MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g44010.2	"nucleolar protein NOP5, putative, expressed"	AC233651_17.1	"TRAF3-interacting protein 1, related AC233651.1 53447-51580 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204429.1.S1_at	A	A1TS	POPTR_0009s15790	POPTR_0009s15790 (11)	scaffold_9:12143830-12145256(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204430.1.S1_at	A	A1TS	POPTR_0009s15780	POPTR_0009s15780 (11)	scaffold_9:12141713-12142248(+) (11)	NA	Q9GYZ0	Kinesin-like protein KIF15	AT3G44050.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g53920.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g104560.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.204432.1.S1_at	A	A1TS	POPTR_0009s15770	POPTR_0009s15770 (11)	scaffold_9:12121825-12122324(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G06570.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g06880.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.204434.1.S1_at	A	A1TS	POPTR_0009s15720	POPTR_0009s15720 (11)	scaffold_9:12098042-12098577(-) (11)	NA	NA	NA	AT5G20935.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3148 (InterPro:IPR021495); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g06990.1	expressed protein	Medtr3g110700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204435.1.S1_s_at	A	A1TS	POPTR_0009s15710	POPTR_0009s15710 (11)	scaffold_9:12082162-12083199(-) (11)	NA	O93309	Structural maintenance of chromosomes protein 3	AT2G27170.2	Structural maintenance of chromosomes (SMC) family protein 	LOC_Os02g04050.1	"chromosome segregation protein, putative, expressed"	Medtr5g094200.1	"condensin complex component SMC3, related "	GO:0016032|viral reproduction||GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane||GO:0005694|chromosome
PtpAffx.204436.1.S1_at	A	A1TS	POPTR_0009s15700	POPTR_0009s15700 (10)	scaffold_9:12080345-12080798(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204438.1.S1_at	A	A1TS	POPTR_0009s15670	POPTR_0009s15670 (11)	scaffold_9:12072673-12073313(+) (11)	NA	Q23892	Lysosomal beta glucosidase	AT5G20950.2	Glycosyl hydrolase family protein 	LOC_Os03g53800.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204439.1.S1_x_at	A	A1TS	POPTR_0009s15660	POPTR_0009s15660 (9)	scaffold_9:12064927-12066586(-) (11)	NA	NA	NA	AT2G27170.2	Structural maintenance of chromosomes (SMC) family protein 	LOC_Os02g04080.1	"chromosome segregation protein sudA, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204440.1.S1_x_at	A	A1TS	POPTR_0009s15620	POPTR_0009s15620 (11)	scaffold_9:12044574-12044784(+) (11)	POPTR_0009s15890 (7)	Q652P9	Germin-like protein 9-3	AT4G14630.1	germin-like protein 9 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107640.1	"Cupin, RmlC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204441.1.S1_at	A	A2MS	POPTR_0009s15600	POPTR_0009s15600 (11)//POPTR_0231s00220 (9)	scaffold_231:12741-12819(+) (9)//scaffold_9:12029529-12029644(+) (11)	NA	Q23892	Lysosomal beta glucosidase	AT5G04885.1	Glycosyl hydrolase family protein 	LOC_Os03g53860.1	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204441.1.S1_x_at	A	A1MS	POPTR_0009s15600	POPTR_0009s15600 (10)	scaffold_9:12028591-12029644(+) (10)	POPTR_0231s00220 (6)	Q23892	Lysosomal beta glucosidase	AT5G04885.1	Glycosyl hydrolase family protein 	LOC_Os03g53860.1	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204443.1.S1_s_at	A	A2TS	POPTR_0009s15560	POPTR_0009s15560 (11)//POPTR_0009s15580 (9)	scaffold_9:12007185-12008070(+) (11)//scaffold_9:12017007-12017893(+) (9)	NA	Q7G192	Aldehyde oxidase 2	AT3G43600.1	aldehyde oxidase 2 	LOC_Os07g18120.1	"aldehyde oxidase, putative, expressed"	Medtr5g094490.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0046872|metal ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.204445.1.S1_at	A	A1MS	POPTR_0009s15540	POPTR_0009s15540 (9)	scaffold_9:11991362-11996083(+) (9)	NA	Q96RT7	Gamma-tubulin complex component 6	AT3G43610.1	Spc97 / Spc98 family of spindle pole body (SBP) component 	LOC_Os04g47906.2	"gamma-tubulin complex component 6, putative, expressed"	AC151525_5.1	Spc97/Spc98 AC151525.18 15709-26106 E EGN_Mt090430 200	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
PtpAffx.204446.1.S1_at	A	A1TS	POPTR_0009s15520	POPTR_0009s15520 (11)	scaffold_9:11980358-11980866(-) (11)	NA	NA	NA	AT2G27140.1	HSP20-like chaperones superfamily protein 	LOC_Os03g45340.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr5g094550.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204447.1.S1_at	A	A1TS	POPTR_0009s15510	POPTR_0009s15510 (11)	scaffold_9:11978232-11978787(-) (11)	NA	NA	NA	AT2G27140.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr5g094550.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204448.1.S1_at	A	A1TS	POPTR_0009s15500	POPTR_0009s15500 (11)	scaffold_9:11976362-11976978(+) (11)	NA	NA	NA	AT3G26932.2	dsRNA-binding protein 3 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g110900.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.204449.1.S1_at	A	A1TS	POPTR_0009s15480	POPTR_0009s15480 (11)	scaffold_9:11960923-11961648(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20445.1.A1_s_at	A	A1TS	POPTR_0003s18180	POPTR_0003s18180 (11)	scaffold_3:17355948-17356113(-) (11)	NA	Q9S9N4	Magnesium transporter MRS2-1	AT1G16010.3	magnesium transporter 2 	LOC_Os06g44150.1	"CorA-like magnesium transporter protein, putative, expressed"	AC233655_15.1	"Mg2+ transporter protein, CorA-like AC233655.2 106201-110644 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20445.2.A1_at	A	A1TS	POPTR_0003s18180	POPTR_0003s18180 (11)	scaffold_3:17355901-17356793(-) (11)	NA	Q9S9N4	Magnesium transporter MRS2-1	AT1G16010.3	magnesium transporter 2 	LOC_Os06g44150.1	"CorA-like magnesium transporter protein, putative, expressed"	AC233655_15.1	"Mg2+ transporter protein, CorA-like AC233655.2 106201-110644 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204450.1.S1_at	A	A1TS	POPTR_0009s15450	POPTR_0009s15450 (11)	scaffold_9:11943128-11948832(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204451.1.S1_s_at	A	A3TS	POPTR_0009s15400	POPTR_0009s15440 (11)//POPTR_0009s15430 (11)//POPTR_0009s15400 (11)	scaffold_9:11923965-11924325(-) (11)//scaffold_9:11936021-11936381(-) (11)//scaffold_9:11943651-11944011(-) (11)	NA	O49675	"Probable carotenoid cleavage dioxygenase 4, chloroplastic"	AT4G19170.1	nine-cis-epoxycarotenoid dioxygenase 4 	LOC_Os02g47510.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204454.1.S1_at	A	A1TS	POPTR_0009s15390	POPTR_0009s15390 (11)	scaffold_9:11916545-11917313(-) (11)	NA	O49675	"Probable carotenoid cleavage dioxygenase 4, chloroplastic"	AT4G19170.1	nine-cis-epoxycarotenoid dioxygenase 4 	LOC_Os12g24800.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025270.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204455.1.S1_at	A	A1TS	POPTR_0009s15380	POPTR_0009s15380 (11)	scaffold_9:11910383-11911608(-) (11)	NA	Q9LDC0	42 kDa peptidyl-prolyl isomerase	AT5G21990.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g06710.1	"tetratricopeptide repeat, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204456.1.S1_at	A	A1TS	POPTR_0009s15360	POPTR_0009s15360 (10)	scaffold_9:11898692-11899608(-) (10)	NA	P36616	Protein kinase dsk1	AT3G44850.1	Protein kinase superfamily protein 	LOC_Os03g53720.1	"SRPK4, putative, expressed"	Medtr1g073750.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204457.1.S1_at	A	A1TS	POPTR_0009s15340	POPTR_0009s15340 (11)	scaffold_9:11892853-11896065(+) (11)	NA	Q058N4	"Magnesium transporter MRS2-11, chloroplastic"	AT5G22830.1	magnesium (Mg) transporter 10 	LOC_Os03g48000.1	"CorA-like magnesium transporter protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204458.1.S1_at	A	A1TS	POPTR_0009s15325	POPTR_0009s15325 (11)	scaffold_9:11886247-11886588(+) (11)	NA	NA	NA	AT1G06340.1	Plant Tudor-like protein 	LOC_Os05g04180.1	"agenet domain containing protein, putative, expressed"	Medtr4g109650.1	Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.204459.1.S1_at	A	A1TS	POPTR_0009s15310	POPTR_0009s15310 (11)	scaffold_9:11878462-11879225(+) (11)	NA	Q9FFC6	GDSL esterase/lipase At5g22810	AT5G22810.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os06g05550.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g121910.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.204460.1.S1_s_at	A	A1TA	POPTR_0009s15300	POPTR_0009s15300 (10)	scaffold_9:11874951-11875345(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204461.1.S1_at	A	A1TS	POPTR_0009s15270	POPTR_0009s15270 (11)	scaffold_9:11854347-11854795(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT3G44820.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	AC157372_1.1	BTB/POZ; NPH3 AC157372.2 9592-12375 E EGN_Mt090430 200	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.204462.1.S1_at	A	A1TS	POPTR_0009s15260	POPTR_0009s15260 (10)	scaffold_9:11851968-11852399(-) (10)	NA	NA	NA	AT5G22790.1	reticulata-related 1 	LOC_Os04g44290.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204462.1.S1_s_at	A	A1TS	POPTR_0009s15260	POPTR_0009s15260 (11)	scaffold_9:11852007-11852450(-) (11)	NA	NA	NA	AT5G22790.1	reticulata-related 1 	LOC_Os04g44290.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204463.1.S1_at	A	A1TS	POPTR_0009s15250	POPTR_0009s15250 (11)	scaffold_9:11837430-11838672(-) (11)	NA	Q8LPK4	AP-2 complex subunit alpha-2	AT5G22780.1	"Adaptor protein complex AP-2, alpha subunit "	LOC_Os03g02150.1	"adapitin protein, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.204464.1.S1_at	A	A1TS	POPTR_0009s15240	POPTR_0009s15240 (11)	scaffold_9:11833374-11833850(+) (11)	NA	Q9W0T1	Nucleosome-remodeling factor subunit NURF301	AT5G22760.1	PHD finger family protein 	LOC_Os11g05130.2	"PHD-finger family protein, expressed"	Medtr4g073830.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204465.1.S1_at	A	A1TS	POPTR_0009s15210	POPTR_0009s15210 (11)	scaffold_9:11811344-11811961(-) (11)	NA	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr5g010440.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
PtpAffx.204469.1.S1_at	A	A1TS	POPTR_0009s14990	POPTR_0009s14990 (11)	scaffold_9:11632809-11633373(+) (11)	NA	Q8S9Z5	Dehydration-responsive element-binding protein 1F	AT4G25490.1	C-repeat/DRE binding factor 1 	LOC_Os01g73770.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr1g129500.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.204470.1.S1_at	A	A1TS	POPTR_0009s14980	POPTR_0009s14980 (11)	scaffold_9:11625031-11626245(+) (11)	NA	Q9ZUX7	tRNA dimethylallyltransferase 2	AT2G27760.1	tRNAisopentenyltransferase 2 	LOC_Os01g73760.1	"IPP transferase, putative, expressed"	Medtr4g073150.1	Isopentenyl transferase-like 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.204471.1.S1_at	A	A1TS	POPTR_0009s14940	POPTR_0009s14940 (11)	scaffold_9:11607249-11608084(+) (11)	NA	Q2PCF1	Pleiotropic drug resistance protein 2	AT2G36380.1	pleiotropic drug resistance 6 	LOC_Os01g42410.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr7g126900.1	PAK-box/P21-Rho-binding; AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.204472.1.S1_at	A	A1TS	POPTR_0009s14920	POPTR_0009s14920 (11)	scaffold_9:11593164-11594538(+) (11)	NA	Q55535	Putative low molecular weight protein-tyrosine-phosphatase slr0328	AT3G44620.1	protein tyrosine phosphatases;protein tyrosine phosphatases 	LOC_Os08g44320.1	"low molecular weight protein-tyrosine-phosphatase slr0328, putative, expressed"	Medtr4g073090.1	Low molecular weight phosphotyrosine protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0004725|protein tyrosine phosphatase activity	NA
PtpAffx.204473.1.S1_s_at	A	A1TS	POPTR_0009s14910	POPTR_0009s14910 (11)	scaffold_9:11590992-11591194(+) (11)	NA	Q0DCT8	Protein kinase G11A	AT2G36350.1	Protein kinase superfamily protein 	LOC_Os12g29580.1	"AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g016740.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204474.1.S1_at	A	A1TS	POPTR_0009s14860	POPTR_0009s14860 (10)	scaffold_9:11557171-11559733(-) (10)	NA	Q6VAK4	Histidine-containing phosphotransfer protein 1	AT1G03430.1	histidine-containing phosphotransfer factor 5 	LOC_Os09g39400.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr7g139810.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.204475.1.S1_at	A	A1TS	POPTR_0009s14840	POPTR_0009s14840 (11)	scaffold_9:11551920-11553114(+) (11)	NA	NA	NA	AT4G04190.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g33510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204476.1.S1_at	A	A1TS	POPTR_0009s14830	POPTR_0009s14830 (11)	scaffold_9:11548801-11549478(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT2G27680.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os09g39390.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.204477.1.S1_at	A	A1TS	POPTR_0009s14810	POPTR_0009s14810 (11)	scaffold_9:11528995-11529266(-) (11)	NA	NA	NA	AT5G54370.1	Late embryogenesis abundant (LEA) protein-related 	LOC_Os05g47940.1	RCLEA8 - Root cap and Late embryogenesis related family protein precursor	Medtr2g026650.1	Root cap 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204478.1.S1_at	A	A1TS	POPTR_0009s14800	POPTR_0009s14800 (11)	scaffold_9:11527604-11528322(+) (11)	NA	Q9LLL8	Xylem serine proteinase 1	AT5G03620.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr7g126990.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204479.1.S1_s_at	A	A1TS	POPTR_0009s14760	POPTR_0009s14760 (11)	scaffold_9:11497751-11499554(-) (11)	NA	Q66GI4	"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial"	AT4G21900.1	proteinaceous RNase P 3 	LOC_Os01g73690.1	"pentatricopeptide, putative, expressed"	Medtr4g158990.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204480.1.S1_at	A	A1TS	POPTR_0009s14740	POPTR_0009s14740 (11)	scaffold_9:11490954-11491626(+) (11)	NA	Q93ZB9	Fatty acyl-CoA reductase 3	AT4G33790.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204480.1.S1_s_at	A	A1TS	POPTR_0009s14740	POPTR_0009s14740 (11)	scaffold_9:11490699-11491551(+) (11)	NA	Q93ZB9	Fatty acyl-CoA reductase 3	AT4G33790.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204482.1.S1_at	A	A1TS	POPTR_0009s14710	POPTR_0009s14710 (11)	scaffold_9:11460207-11461005(+) (11)	NA	Q9LXN4	Protein HIRA	AT3G44530.2	homolog of histone chaperone HIRA 	LOC_Os09g39420.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC235092_11.1	TUP1-like enhancer of split AC235092.1 68028-61680 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.204483.1.S1_at	A	A1MS	POPTR_0009s14700	POPTR_0009s14700 (11)	scaffold_9:11450887-11451338(-) (11)	NA	Q9ZUW3	Pentatricopeptide repeat-containing protein At2g27610	AT2G27610.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g38190.2	"pentatricopeptide, putative"	AC235092_12.1	Aldo/keto reductase AC235092.1 69694-72297 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204484.1.S1_at	A	A1TS	POPTR_0009s14690	POPTR_0009s14690 (11)	scaffold_9:11448813-11449296(+) (11)	NA	NA	NA	AT3G07350.1	Protein of unknown function (DUF506)  	LOC_Os11g25040.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr8g012610.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204485.1.S1_at	A	A1TS	POPTR_0009s14620	POPTR_0009s14620 (11)	scaffold_9:11425396-11425514(-) (11)	NA	P54751	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1"	AT1G08280.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os01g63970.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g069790.1	"Glycosyl transferase, family 29; Immunoglobulin/major histocompatibility complex "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.204485.1.S1_s_at	A	A1TS	POPTR_0009s14620	POPTR_0009s14620 (11)	scaffold_9:11425524-11425800(-) (11)	NA	P54751	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1"	AT1G08280.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os01g63970.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g069790.1	"Glycosyl transferase, family 29; Immunoglobulin/major histocompatibility complex "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.204486.1.S1_at	A	A1TS	POPTR_0009s14610	POPTR_0009s14610 (11)	scaffold_9:11422790-11423671(+) (11)	NA	Q9SWB4	Poly [ADP-ribose] polymerase 3	AT5G22470.1	NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases 	LOC_Os02g32860.1	"poly synthetase 3, putative, expressed"	Medtr4g069780.1	BRCT 	NA	GO:0003950|NAD+ ADP-ribosyltransferase activity	GO:0005634|nucleus
PtpAffx.204487.1.S1_at	A	A1MS	POPTR_0009s14580	POPTR_0009s14580 (11)	scaffold_9:11396083-11396680(-) (11)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os02g45280.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204488.1.S1_at	A	A1TS	POPTR_0009s14520	POPTR_0009s14520 (11)	scaffold_9:11375072-11375120(+) (11)	NA	Q4V8J4	Glycerol-3-phosphate acyltransferase 3	AT5G60620.1	glycerol-3-phosphate acyltransferase 9 	LOC_Os07g34730.1	"acyltransferase, putative, expressed"	Medtr8g129160.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.204489.1.S1_at	A	A1TS	POPTR_0009s14510	POPTR_0009s14510 (11)	scaffold_9:11361767-11362812(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G76270.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr5g106640.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204490.1.S1_at	A	A1TS	POPTR_0009s14490	POPTR_0009s14490 (11)	scaffold_9:11335398-11335903(-) (11)	NA	NA	NA	AT4G35240.2	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37520.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204491.1.S1_at	A	A1TS	POPTR_0009s14470	POPTR_0009s14470 (11)	scaffold_9:11320613-11321157(+) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43980.1	"carrier, putative"	Medtr4g096140.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204492.1.S1_at	A	A1TS	POPTR_0009s14450	POPTR_0009s14450 (11)	scaffold_9:11316740-11317189(+) (11)	NA	NA	NA	AT2G17070.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43980.1	"carrier, putative"	Medtr4g096140.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204493.1.S1_at	A	A2TS	POPTR_0009s14460	POPTR_0009s14460 (11)//POPTR_0009s14440 (10)	scaffold_9:11310505-11311006(-) (11)//scaffold_9:11318531-11319032(+) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os11g06110.1	"carrier, putative, expressed"	Medtr4g096080.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204494.1.S1_at	A	A1TS	POPTR_0009s14360	POPTR_0009s14360 (11)	scaffold_9:11263311-11264401(+) (11)	NA	Q8LBB7	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5	AT4G35190.1	Putative lysine decarboxylase family protein 	LOC_Os02g41770.1	"uncharacterized protein PA4923, putative"	Medtr7g121720.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204496.1.S1_s_at	A	A1MS	POPTR_0009s14330	POPTR_0009s14330 (9)	scaffold_9:11236725-11236974(-) (11)	NA	NA	NA	AT1G29510.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37440.1	OsSAUR49 - Auxin-responsive SAUR gene family member	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204498.1.S1_at	A	A1TS	POPTR_0009s14320	POPTR_0009s14320 (11)	scaffold_9:11234717-11235046(-) (11)	NA	NA	NA	AT1G29510.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37350.1	"OsSAUR40 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g090130.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204499.1.S1_at	A	A1TS	POPTR_0009s14310	POPTR_0009s14310 (11)	scaffold_9:11232710-11233084(-) (11)	NA	NA	NA	AT1G29500.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37400.1	OsSAUR45 - Auxin-responsive SAUR gene family member	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2045.1.S1_at	A	A1TS	POPTR_0019s04620	POPTR_0019s04620 (10)	scaffold_19:4803734-4804082(-) (10)	NA	Q42374	Syntaxin-related protein KNOLLE	AT1G08560.1	syntaxin  of plants 111 	LOC_Os03g52650.1	"syntaxin-related protein, putative, expressed"	Medtr5g012160.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.204500.1.S1_at	A	A1TS	POPTR_0009s14290	POPTR_0009s14290 (11)	scaffold_9:11224407-11224749(-) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47420.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g023220.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204500.1.S1_s_at	A	A1TS	POPTR_0009s14290	POPTR_0009s14290 (11)	scaffold_9:11224104-11224397(-) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47420.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g023220.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204501.1.S1_at	A	A1TS	POPTR_0009s14280	POPTR_0009s14280 (11)	scaffold_9:11221445-11221817(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204502.1.S1_x_at	A	A1TS	POPTR_0009s14260	POPTR_0009s14260 (10)	scaffold_9:11215481-11216030(+) (10)	NA	O22265	"Signal recognition particle 43 kDa protein, chloroplastic"	AT2G47450.1	chloroplast signal recognition particle component (CAO) 	LOC_Os03g03990.1	"signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed"	NA	NA	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.204503.1.S1_at	A	A1TS	POPTR_0009s14190	POPTR_0009s14190 (11)	scaffold_9:11167850-11168882(-) (11)	NA	Q9BWH6	RNA polymerase II-associated protein 1	AT4G38440.1	"LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os06g37640.1	expressed protein	Medtr5g048760.1	"Tyrosine protein kinase, active site; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204504.1.S1_s_at	A	A1TS	POPTR_0009s14170	POPTR_0009s14170 (11)	scaffold_9:11159625-11163661(-) (11)	NA	Q9LEL5	3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr3g105610.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.204506.1.S1_s_at	A	A1TS	POPTR_0009s14140	POPTR_0009s14140 (11)	scaffold_9:11147628-11148195(-) (11)	NA	Q9SDA8	F-box/LRR-repeat protein 10	AT2G17020.1	F-box/RNI-like superfamily protein 	LOC_Os03g04270.1	"OsFBL10 - F-box domain and LRR containing protein, expressed"	Medtr1g143330.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.204507.1.S1_at	A	A1TS	POPTR_0009s14120	POPTR_0009s14120 (11)	scaffold_9:11127887-11128397(-) (11)	NA	Q8GWA9	Pentatricopeptide repeat-containing protein At2g17033	AT2G17033.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os02g02770.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g142970.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204508.1.S1_at	A	A1TS	POPTR_0009s14110	POPTR_0009s14110 (11)	scaffold_9:11123563-11123969(-) (11)	NA	O04590	"Pentatricopeptide repeat-containing protein At1g62260, mitochondrial"	AT1G62260.1	mitochondrial editing factor 9 	LOC_Os06g12360.1	"pentatricopeptide, putative, expressed"	AC233560_17.1	Pentatricopeptide repeat AC233560.2 44393-42525 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204510.1.S1_at	A	A1TS	POPTR_0009s14070	POPTR_0009s14070 (11)	scaffold_9:11096395-11096790(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204511.1.S1_at	A	A1TS	POPTR_0009s14060	POPTR_0009s14060 (11)	scaffold_9:11094593-11095843(+) (11)	NA	Q8W595	Histone-lysine N-methyltransferase SUVR4	AT3G04380.1	SET-domain containing protein lysine methyltransferase family protein 	LOC_Os02g40770.2	"SET domain containing protein, expressed"	Medtr1g093770.1	Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.204512.1.S1_at	A	A1TS	POPTR_0009s14040	POPTR_0009s14040 (11)	scaffold_9:11084220-11085245(-) (11)	NA	Q8LF36	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform	AT1G13460.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g47790.3	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.204513.1.S1_at	A	A1TS	POPTR_0009s14010	POPTR_0009s14010 (11)	scaffold_9:11059989-11061394(-) (11)	NA	NA	NA	AT4G38500.1	Protein of unknown function (DUF616) 	LOC_Os06g50860.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr4g134220.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204514.1.S1_at	A	A1MS	POPTR_0009s13990	POPTR_0009s13990 (9)	scaffold_9:11049830-11051085(+) (10)	NA	NA	NA	NA	NA	LOC_Os04g47290.3	"amine oxidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204516.1.S1_at	A	A1TS	POPTR_0009s13960	POPTR_0009s13960 (11)	scaffold_9:11042129-11042628(+) (11)	NA	NA	NA	AT4G39790.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37040.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr4g140290.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204517.1.S1_at	A	A1MS	POPTR_0009s13940	POPTR_0009s13940 (11)	scaffold_9:11013669-11014262(-) (11)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.204518.1.S1_at	A	A1TS	POPTR_0009s13900	POPTR_0009s13900 (11)	scaffold_9:10988219-10989335(-) (11)	NA	Q68CP4	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G47900.1	Protein of unknown function (DUF1624) 	LOC_Os02g32504.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr3g163510.1	"Heparan-alpha-glucosaminide N-acetyltransferase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204520.1.S1_at	A	A1TS	POPTR_0009s13880	POPTR_0009s13880 (11)	scaffold_9:10969932-10970321(-) (11)	NA	Q11207	Poly [ADP-ribose] polymerase 2	AT4G02390.1	poly(ADP-ribose) polymerase 	LOC_Os01g24940.1	"poly synthetase 2-A, putative, expressed"	Medtr1g108270.1	"Poly(ADP-ribose) polymerase, regulatory region; PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204521.1.S1_s_at	A	A1TS	POPTR_0009s13870	POPTR_0009s13870 (11)	scaffold_9:10968852-10969361(+) (11)	NA	NA	NA	AT2G16900.1	Arabidopsis phospholipase-like protein (PEARLI 4) family 	NA	NA	Medtr3g163550.1	Arabidopsis phospholipase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204522.1.S1_at	A	A1TS	POPTR_0009s13850	POPTR_0009s13850 (11)	scaffold_9:10954989-10955651(+) (11)	NA	Q41001	Blue copper protein	AT2G32300.1	uclacyanin 1 	LOC_Os06g50650.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.204523.1.S1_at	A	A1TS	POPTR_0009s13830	POPTR_0009s13830 (11)	scaffold_9:10947443-10948242(+) (11)	NA	Q9ZVX1	Probable ubiquitin-conjugating enzyme E2 23	AT2G16920.1	ubiquitin-conjugating enzyme 23 	LOC_Os01g03520.1	"ubiquitin conjugating enzyme protein, putative, expressed"	Medtr2g017250.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.204524.1.S1_at	A	A1TS	POPTR_0009s13820	POPTR_0009s13820 (11)	scaffold_9:10936859-10937227(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204525.1.S1_at	A	A1MS	POPTR_0009s13800	POPTR_0009s13800 (9)	scaffold_9:10932685-10933509(+) (9)	NA	P13443	Glycerate dehydrogenase	AT1G68010.2	hydroxypyruvate reductase 	LOC_Os02g01150.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204526.1.S1_at	A	A1TS	POPTR_0009s13770	POPTR_0009s13770 (11)	scaffold_9:10920000-10920929(+) (11)	NA	NA	NA	AT4G35070.1	SBP (S-ribonuclease binding protein) family protein 	NA	NA	Medtr3g163480.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204527.1.S1_at	A	A1TS	POPTR_0009s13740	POPTR_0009s13740 (11)	scaffold_9:10897906-10898547(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204528.1.S1_at	A	A1TS	POPTR_0009s13720	POPTR_0009s13720 (11)	scaffold_9:10888535-10888955(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204529.1.S1_at	A	A1TS	POPTR_0009s13680	POPTR_0009s13680 (11)	scaffold_9:10860504-10861311(-) (11)	NA	Q9SCU9	Beta-galactosidase 13	AT2G16730.1	glycosyl hydrolase family 35 protein 	LOC_Os08g43570.1	"beta-galactosidase precursor, putative, expressed"	Medtr4g098560.1	"D-galactoside/L-rhamnose binding SUEL lectin; Glycoside hydrolase, family 35 "	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204530.1.S1_at	A	A1TS	POPTR_0009s13670	POPTR_0009s13670 (11)	scaffold_9:10853039-10853588(+) (11)	NA	Q6WWW4	E3 ubiquitin-protein ligase UPL3	AT4G38600.1	HEAT repeat ;HECT-domain (ubiquitin-transferase) 	LOC_Os02g01170.1	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.204531.1.S1_at	A	A1TS	POPTR_0009s13670	POPTR_0009s13670 (11)	scaffold_9:10848106-10848537(+) (11)	NA	Q6WWW4	E3 ubiquitin-protein ligase UPL3	AT4G38600.1	HEAT repeat ;HECT-domain (ubiquitin-transferase) 	LOC_Os02g01170.1	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.204536.1.S1_at	A	A1TS	POPTR_0009s13530	POPTR_0009s13530 (11)	scaffold_9:10741197-10741758(-) (11)	NA	NA	NA	AT4G34950.1	Major facilitator superfamily protein 	LOC_Os09g36600.1	"nodulin, putative, expressed"	Medtr5g022310.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204536.1.S1_x_at	A	A1TS	POPTR_0009s13530	POPTR_0009s13530 (11)	scaffold_9:10741197-10741758(-) (11)	NA	NA	NA	AT4G34950.1	Major facilitator superfamily protein 	LOC_Os09g36600.1	"nodulin, putative, expressed"	Medtr5g022310.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204537.1.S1_at	A	A1MS	POPTR_0009s13520	POPTR_0009s13520 (9)	scaffold_9:10738371-10739001(-) (9)	NA	NA	NA	AT4G38650.1	Glycosyl hydrolase family 10 protein 	LOC_Os03g14010.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr3g163350.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204538.1.S1_at	A	A1TS	POPTR_0009s13500	POPTR_0009s13500 (11)	scaffold_9:10720723-10725637(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g35060.2	"OsFBX238 - F-box domain containing protein, expressed"	Medtr8g133720.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204539.1.S1_at	A	A1TS	POPTR_0009s13490	POPTR_0009s13490 (11)	scaffold_9:10720912-10721894(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204540.1.S1_at	A	A1TS	POPTR_0009s13480	POPTR_0009s13480 (11)	scaffold_9:10717282-10717828(+) (11)	NA	Q9FSG7	Thaumatin-like protein 1a	AT4G38670.3	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204541.1.S1_s_at	A	A1TS	POPTR_0009s13460	POPTR_0009s13460 (11)	scaffold_9:10700920-10701080(+) (11)	NA	Q38896	Glycine-rich protein 2b	AT2G17870.1	cold shock domain protein 3 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.204542.1.S1_at	A	A1TS	POPTR_0009s13450	POPTR_0009s13450 (11)	scaffold_9:10690895-10691389(+) (11)	NA	NA	NA	AT4G34940.1	armadillo repeat only 1 	LOC_Os09g36550.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g022170.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204543.1.S1_at	A	A1TS	POPTR_0009s13390	POPTR_0009s13390 (11)	scaffold_9:10667878-10668067(-) (11)	NA	B9SX12	UPF0497 membrane protein 7	AT2G36100.1	Uncharacterised protein family (UPF0497) 	LOC_Os06g12500.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204544.1.S1_at	A	A1TS	POPTR_0009s13360	POPTR_0009s13360 (10)	scaffold_9:10648949-10649497(-) (10)	NA	Q54R82	Mitogen-activated protein kinase kinase kinase A	AT5G67080.1	mitogen-activated protein kinase kinase kinase 19 	LOC_Os01g50400.1	"STE_MEKK_ste11_MAP3K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204545.1.S1_at	A	A1TS	POPTR_0009s13340	POPTR_0009s13340 (11)	scaffold_9:10644096-10645978(+) (11)	NA	NA	NA	AT2G21110.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g59440.1	"dirigent, putative, expressed"	Medtr3g138740.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204547.1.S1_at	A	A1TS	POPTR_0009s13320	POPTR_0009s13320 (10)	scaffold_9:10641928-10642594(+) (10)	NA	Q9URY4	Putative amidase C869.01	AT4G34880.1	Amidase family protein 	LOC_Os04g10530.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.204548.1.S1_at	A	A1TS	POPTR_0009s13300	POPTR_0009s13300 (11)	scaffold_9:10635054-10635823(+) (11)	NA	Q9URY4	Putative amidase C869.01	AT4G34880.1	Amidase family protein 	LOC_Os04g10460.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.204549.1.S1_at	A	A1MS	POPTR_0009s13260	POPTR_0009s13260 (9)	scaffold_9:10598610-10601047(+) (10)	NA	Q5SRE5	Nucleoporin NUP188 homolog	AT4G38760.1	Protein of unknown function (DUF3414) 	LOC_Os10g06610.1	expressed protein	Medtr4g100780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204550.1.S1_at	A	A1TS	POPTR_0009s13190	POPTR_0009s13190 (11)	scaffold_9:10561965-10562291(-) (11)	NA	NA	NA	AT5G42146.1	unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g163250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204551.1.S1_at	A	A1TS	POPTR_0009s13170	POPTR_0009s13170 (9)	scaffold_9:10557207-10557908(+) (11)	NA	NA	NA	AT4G30150.1	"CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink). "	LOC_Os03g10600.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204552.1.S1_at	A	A1TS	POPTR_0009s13140	POPTR_0009s13140 (11)	scaffold_9:10541448-10541818(+) (11)	NA	Q9FUB7	Chalcone synthase	AT4G34850.1	Chalcone and stilbene synthase family protein 	LOC_Os07g22850.1	"chalcone and stilbene synthases, putative, expressed"	Medtr4g108490.1	"Chalcone and stilbene synthases, C-terminal "	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004315|3-oxoacyl-[acyl-carrier-protein] synthase activity	NA
PtpAffx.204553.1.S1_at	A	A1MS	POPTR_0009s13120	POPTR_0009s13120 (9)	scaffold_9:10530467-10531427(+) (11)	NA	Q75IW1	COBRA-like protein 2	AT3G29810.1	COBRA-like protein 2 precursor 	LOC_Os03g30260.1	"COBRA-like protein precursor, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204554.1.S1_at	A	A1TS	POPTR_0009s13090	POPTR_0009s13090 (11)	scaffold_9:10508626-10509151(-) (11)	POPTR_0009s13105 (7)	Q9FWV6	Probable aquaporin TIP3-1	AT1G73190.1	Aquaporin-like superfamily protein 	LOC_Os10g35050.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.204555.1.S1_at	A	A1TS	POPTR_0009s13070	POPTR_0009s13070 (11)	scaffold_9:10499662-10500211(-) (11)	NA	P61838	Aquaporin PIP1.1	AT3G61430.2	plasma membrane intrinsic protein 1A 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.204556.1.S1_s_at	A	A2TS	POPTR_0009s13040	POPTR_0009s13040 (11)//POPTR_0009s13050 (11)	scaffold_9:10487472-10487596(+) (11)//scaffold_9:10492653-10492777(+) (11)	NA	P33080	Auxin-induced protein X10A	AT5G18080.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02530.1	OsSAUR32 - Auxin-responsive SAUR gene family member	Medtr4g098370.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204556.1.S1_x_at	A	A2TS	POPTR_0009s13040	POPTR_0009s13040 (11)//POPTR_0009s13050 (11)	scaffold_9:10487411-10487584(+) (11)//scaffold_9:10492592-10492765(+) (11)	NA	P33080	Auxin-induced protein X10A	AT5G18080.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02530.1	OsSAUR32 - Auxin-responsive SAUR gene family member	Medtr4g098370.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204558.1.S1_at	A	A1TS	POPTR_0009s13030	POPTR_0009s13030 (11)	scaffold_9:10483326-10483595(+) (11)	NA	P33080	Auxin-induced protein X10A	AT2G21210.1	SAUR-like auxin-responsive protein family  	LOC_Os06g48860.1	OsSAUR28 - Auxin-responsive SAUR gene family member	Medtr4g098370.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204559.1.S1_at	A	A1TS	POPTR_0009s13020	POPTR_0009s13020 (11)	scaffold_9:10479706-10479862(-) (11)	NA	P33079	Auxin-induced protein 10A5	AT4G34770.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02520.1	"OsSAUR31 - Auxin-responsive SAUR gene family member, expressed"	Medtr5g008440.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20456.1.S1_at	A	A1TS	POPTR_0005s10290	POPTR_0005s10290 (10)	scaffold_5:7370954-7371389(-) (10)	NA	Q96255	"Phosphoserine aminotransferase, chloroplastic"	AT4G35630.1	phosphoserine aminotransferase 	LOC_Os03g06200.1	"aminotransferase, putative, expressed"	Medtr8g088390.1	Phosphoserine aminotransferase; ; 	GO:0008152|metabolic process	NA	NA
PtpAffx.204561.1.S1_at	A	A1TS	POPTR_0009s13010	POPTR_0009s13010 (11)	scaffold_9:10474762-10475034(-) (11)	NA	P33082	Auxin-induced protein X15	AT2G21210.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02530.1	OsSAUR32 - Auxin-responsive SAUR gene family member	Medtr4g098370.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204562.1.S1_at	A	A1TS	POPTR_0009s13000	POPTR_0009s13000 (11)	scaffold_9:10471609-10471782(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g097870.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204562.1.S1_x_at	A	A1TS	POPTR_0009s13000	POPTR_0009s13000 (11)	scaffold_9:10471609-10471782(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g097870.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204564.1.S1_at	A	A1TS	POPTR_0009s12990	POPTR_0009s12990 (11)	scaffold_9:10466786-10467042(-) (11)	NA	P33081	Auxin-induced protein 15A	AT5G18020.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr3g104980.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204566.1.S1_at	A	A1TS	POPTR_0009s12960	POPTR_0009s12960 (11)	scaffold_9:10460950-10462063(-) (11)	NA	P33080	Auxin-induced protein X10A	AT5G18010.1	SAUR-like auxin-responsive protein family  	LOC_Os06g48860.1	OsSAUR28 - Auxin-responsive SAUR gene family member	Medtr4g098010.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204567.1.S1_at	A	A1TS	POPTR_0009s12950	POPTR_0009s12950 (11)	scaffold_9:10458101-10458361(-) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT4G38840.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g098290.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204568.1.S1_at	A	A1TS	POPTR_0009s12940	POPTR_0009s12940 (11)	scaffold_9:10456037-10456503(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204569.1.S1_at	A	A1TS	POPTR_0009s12930	POPTR_0009s12930 (11)	scaffold_9:10454905-10455171(-) (11)	NA	P33080	Auxin-induced protein X10A	AT5G18020.1	SAUR-like auxin-responsive protein family  	LOC_Os06g48860.1	OsSAUR28 - Auxin-responsive SAUR gene family member	Medtr3g105010.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204570.1.S1_at	A	A1TS	POPTR_0009s12920	POPTR_0009s12920 (11)	scaffold_9:10452815-10453062(-) (11)	NA	P33080	Auxin-induced protein X10A	AT5G18020.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g097980.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204572.1.S1_at	A	A1TS	POPTR_0009s12810	POPTR_0009s12810 (11)	scaffold_9:10382175-10384617(-) (11)	NA	Q9SI62	Probable polyprenol reductase 2	AT2G16530.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os04g48750.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr4g097490.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.204573.1.S1_at	A	A1TS	POPTR_0009s12780	POPTR_0009s12780 (10)	scaffold_9:10369749-10369809(-) (11)	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G21270.2	ubiquitin fusion degradation 1 	LOC_Os04g48770.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.204574.1.S1_at	A	A1TS	POPTR_0009s12740	POPTR_0009s12740 (11)	scaffold_9:10357089-10357459(+) (11)	NA	Q54NP8	Kinesin-related protein 4	AT2G21300.2	ATP binding microtubule motor family protein 	LOC_Os04g45580.1	"kinesin motor domain containing protein, expressed"	Medtr4g097240.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.204576.1.S1_s_at	A	A2TS	POPTR_0009s12720	POPTR_0009s12720 (11)//POPTR_0004s16940 (10)	scaffold_4:17315246-17315748(+) (10)//scaffold_9:10326578-10327081(+) (11)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT4G08350.1	global transcription factor group A2 	LOC_Os02g53230.1	"transcription elongation factor SPT5 homolog 1, putative, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204577.1.S1_at	A	A1TS	POPTR_0009s12720	POPTR_0009s12720 (11)	scaffold_9:10324893-10325213(+) (11)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT4G08350.1	global transcription factor group A2 	LOC_Os02g53230.1	"transcription elongation factor SPT5 homolog 1, putative, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204578.1.S1_at	A	A1TS	POPTR_0009s12680	POPTR_0009s12680 (11)	scaffold_9:10298468-10298958(-) (11)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr3g163040.1	"Calcium-binding EF-hand; SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204578.1.S1_x_at	A	A1TS	POPTR_0009s12680	POPTR_0009s12680 (11)	scaffold_9:10297848-10298709(-) (11)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr3g163040.1	"Calcium-binding EF-hand; SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204579.1.S1_s_at	A	A1TS	POPTR_0009s12670	POPTR_0009s12670 (11)	scaffold_9:10293646-10293969(-) (11)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os10g36810.1	"plus-3 domain containing protein, putative, expressed"	Medtr3g163040.1	"Calcium-binding EF-hand; SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.204580.1.S1_at	A	A1TS	POPTR_0009s12640	POPTR_0009s12640 (11)	scaffold_9:10279751-10280350(+) (11)	NA	Q42600	Cytochrome P450 84A1	AT4G36220.1	ferulic acid 5-hydroxylase 1 	LOC_Os10g36848.1	"cytochrome P450, putative, expressed"	Medtr5g021320.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.204581.1.S1_at	A	A1TS	POPTR_0009s12630	POPTR_0009s12630 (11)	scaffold_9:10274415-10275155(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204582.1.S1_at	A	A1TS	POPTR_0009s12580	POPTR_0009s12580 (10)	scaffold_9:10231842-10239548(-) (10)	NA	Q945F0	Enhanced disease susceptibility 5	AT2G21340.1	MATE efflux family protein 	LOC_Os02g02980.1	"MATE domain containing protein, expressed"	Medtr4g096860.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204583.1.S1_at	A	A1TS	POPTR_0009s12570	POPTR_0009s12570 (11)	scaffold_9:10230375-10231852(-) (11)	NA	Q945F0	Enhanced disease susceptibility 5	AT2G21340.1	MATE efflux family protein 	LOC_Os02g02980.1	"MATE domain containing protein, expressed"	Medtr4g096820.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.204584.1.S1_at	A	A1MS	POPTR_0009s12560	POPTR_0009s12560 (11)	scaffold_9:10228087-10228779(-) (11)	NA	Q945F0	Enhanced disease susceptibility 5	AT2G21340.2	MATE efflux family protein 	NA	NA	Medtr4g096920.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204585.1.S1_at	A	A1TS	POPTR_0009s12550	POPTR_0009s12550 (11)	scaffold_9:10222769-10223193(-) (11)	NA	Q945F0	Enhanced disease susceptibility 5	AT2G21340.1	MATE efflux family protein 	LOC_Os02g02980.1	"MATE domain containing protein, expressed"	Medtr4g096820.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.204586.1.S1_at	A	A1TS	POPTR_0009s12540	POPTR_0009s12540 (11)	scaffold_9:10220590-10221696(+) (11)	NA	NA	NA	AT2G21350.1	RNA-binding CRS1 / YhbY (CRM) domain protein 	LOC_Os10g36860.1	"CRS1/YhbY domain containing protein, expressed"	Medtr4g096800.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.204587.1.S1_at	A	A1TS	POPTR_0009s12530	POPTR_0009s12530 (11)	scaffold_9:10217285-10217862(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204588.1.S1_at	A	A1TS	POPTR_0009s12520	POPTR_0009s12520 (10)	scaffold_9:10214718-10216052(+) (10)	NA	P39211	Xylulose kinase	AT2G21370.1	xylulose kinase-1 	LOC_Os07g22650.1	expressed protein	Medtr4g096720.1	"Carbohydrate kinase, FGGY "	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.204589.1.S1_at	A	A1TS	POPTR_0009s12490	POPTR_0009s12490 (11)	scaffold_9:10190397-10190719(+) (11)	NA	Q9LQZ7	Probable salt tolerance-like protein At1g75540	AT4G39070.1	B-box zinc finger family protein 	LOC_Os04g45690.1	"B-box zinc finger family protein, putative, expressed"	Medtr3g162910.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.204590.1.S1_at	A	A1MS	POPTR_0009s12480	POPTR_0009s12480 (11)	scaffold_9:10180349-10182273(-) (11)	NA	NA	NA	AT2G21385.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os09g36130.1	expressed protein	Medtr4g096640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204591.1.S1_at	A	A1TS	POPTR_0009s12470	POPTR_0009s12470 (11)	scaffold_9:10172949-10174995(-) (11)	NA	Q8L718	"ALBINO3-like protein 2, chloroplastic"	AT3G44370.1	"Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain "	LOC_Os06g07474.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g089280.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204592.1.S1_at	A	A1TS	POPTR_0009s12450	POPTR_0009s12450 (10)	scaffold_9:10162704-10163252(-) (10)	NA	NA	NA	AT5G66350.1	Lateral root primordium (LRP) protein-related 	LOC_Os09g36160.1	"LRP1, putative, expressed"	Medtr5g021040.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204593.1.S1_at	A	A1TS	POPTR_0009s12430	POPTR_0009s12430 (11)	scaffold_9:10142161-10142724(-) (11)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT4G39080.1	vacuolar proton ATPase A3 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.204594.1.S1_at	A	A1TS	POPTR_0009s12410	POPTR_0009s12410 (11)	scaffold_9:10137312-10137457(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204595.1.S1_at	A	A1TS	POPTR_0009s12370	POPTR_0009s12370 (10)	scaffold_9:10111364-10111851(+) (11)	NA	Q9NW13	RNA-binding protein 28	AT2G21440.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g58720.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g093820.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.204597.1.S1_at	A	A1TS	POPTR_0009s12360	POPTR_0009s12360 (10)	scaffold_9:10087885-10088097(-) (10)	NA	Q9SIW1	BEL1-like homeodomain protein 7	AT2G16400.1	BEL1-like homeodomain 7 	LOC_Os03g47740.3	"homeodomain protein, putative, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.204597.1.S1_s_at	A	A1TS	POPTR_0009s12360	POPTR_0009s12360 (11)	scaffold_9:10087505-10088070(-) (11)	NA	Q9SIW1	BEL1-like homeodomain protein 7	AT2G16400.1	BEL1-like homeodomain 7 	LOC_Os03g47740.3	"homeodomain protein, putative, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.204598.1.S1_at	A	A1TS	POPTR_0009s12350	POPTR_0009s12350 (10)	scaffold_9:10081454-10082031(+) (11)	NA	A4IHD2	Helicase ARIP4	AT2G16390.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os07g25390.1	"DRD1, putative, expressed"	Medtr7g027270.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.204599.1.S1_at	A	A1TS	POPTR_0009s12320	POPTR_0009s12320 (11)	scaffold_9:10068978-10069590(-) (11)	NA	Q9T020	Probable receptor-like protein kinase At4g39110	AT4G39110.1	Malectin/receptor-like protein kinase family protein 	LOC_Os06g03610.1	"TKL_IRAK_CrRLK1L-1.13 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g040400.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204600.1.S1_at	A	A1TS	POPTR_0009s12290	POPTR_0009s12290 (11)	scaffold_9:10058213-10058537(+) (11)	NA	P21298	Late embryogenesis abundant protein	AT2G21490.1	dehydrin LEA 	NA	NA	Medtr3g162790.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
PtpAffx.204600.1.S1_s_at	A	A1TS	POPTR_0009s12290	POPTR_0009s12290 (11)	scaffold_9:10057738-10058461(+) (11)	NA	P21298	Late embryogenesis abundant protein	AT2G21490.1	dehydrin LEA 	NA	NA	Medtr3g162790.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
PtpAffx.204601.1.S1_at	A	A1TS	POPTR_0009s12270	POPTR_0009s12270 (9)	scaffold_9:10047276-10047375(+) (9)	NA	NA	NA	AT2G16385.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr8g040310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204602.1.S1_at	A	A1TS	POPTR_0009s12240	POPTR_0009s12240 (11)	scaffold_9:10015788-10016412(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204603.1.S1_at	A	A1TS	POPTR_0009s12220	POPTR_0009s12220 (11)	scaffold_9:10004431-10005654(+) (11)	NA	Q10137	Sec14 cytosolic factor	AT2G21540.2	SEC14-like 3 	LOC_Os02g24430.2	expressed protein	Medtr4g096250.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204604.1.S1_at	A	A1MS	POPTR_0009s12180	POPTR_0009s12180 (10)	scaffold_9:9974490-9975316(+) (10)	POPTR_0009s12190 (6)	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT3G50930.1	cytochrome BC1 synthesis 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.204605.1.S1_at	A	A1TS	POPTR_0009s12160	POPTR_0009s12160 (11)	scaffold_9:9965838-9966362(+) (11)	NA	NA	NA	AT4G34560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g162630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204606.1.S1_at	A	A1TS	POPTR_0009s12130	POPTR_0009s12130 (11)	scaffold_9:9944905-9945640(-) (11)	NA	Q8LBB2	SNF1-related protein kinase regulatory subunit gamma 1	AT3G48530.1	SNF1-related protein kinase regulatory subunit gamma 1 	LOC_Os01g44250.1	"CBS domain containing membrane protein, putative, expressed"	Medtr3g162400.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204608.1.S1_at	A	A1TS	POPTR_0009s12100	POPTR_0009s12100 (11)	scaffold_9:9925787-9926093(-) (11)	NA	O42832	AdoMet-dependent rRNA methyltransferase spb1	AT4G25730.1	FtsJ-like methyltransferase family protein 	LOC_Os05g49230.1	"ribosomal RNA large subunit methyltransferase J, putative, expressed"	Medtr4g095940.1	"Ribosomal RNA methyltransferase RrmJ/FtsJ; Spb1, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing||GO:0032259|methylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0008168|methyltransferase activity	GO:0005634|nucleus
PtpAffx.204609.1.S1_at	A	A1MS	POPTR_0009s12080	POPTR_0009s12080 (9)	scaffold_9:9919257-9919935(+) (9)	NA	P52578	Isoflavone reductase homolog	AT4G39230.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.204610.1.S1_at	A	A1TS	POPTR_0009s12050	POPTR_0009s12050 (11)	scaffold_9:9903382-9903469(-) (11)	NA	Q9ZPV9	Syntaxin-112	AT2G18260.1	syntaxin of plants 112 	LOC_Os03g52650.1	"syntaxin-related protein, putative, expressed"	Medtr5g020560.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
PtpAffx.204610.1.S1_s_at	A	A1TS	POPTR_0009s12050	POPTR_0009s12050 (11)	scaffold_9:9903460-9903951(-) (11)	NA	Q9ZPV9	Syntaxin-112	AT2G18260.1	syntaxin of plants 112 	LOC_Os03g52650.1	"syntaxin-related protein, putative, expressed"	Medtr5g020560.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
PtpAffx.204611.1.S1_at	A	A1TS	POPTR_0009s12040	POPTR_0009s12040 (11)	scaffold_9:9902145-9902624(-) (11)	NA	NA	NA	AT2G32380.1	"Transmembrane protein 97, predicted "	LOC_Os07g27450.1	expressed protein	Medtr4g062020.1	"Transmembrane protein 97, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204612.1.S1_at	A	A1TS	POPTR_0009s12030	POPTR_0009s12030 (11)	scaffold_9:9899554-9900609(+) (11)	NA	Q9SIJ9	Putative pectinesterase 11	AT2G21610.1	pectinesterase 11 	LOC_Os01g44340.1	"pectinesterase, putative, expressed"	Medtr5g095390.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204613.1.S1_at	A	A1MS	POPTR_0009s12010	POPTR_0009s12010 (9)	scaffold_9:9893847-9894138(-) (9)	NA	NA	NA	AT2G21620.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g47650.1	"universal stress protein domain containing protein, putative, expressed"	Medtr3g162380.1	UspA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204614.1.S1_at	A	A1TS	POPTR_0009s11990	POPTR_0009s11990 (11)	scaffold_9:9868705-9868927(-) (11)	NA	NA	NA	AT1G75250.1	RAD-like 6 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr3g162290.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204615.1.S1_at	A	A1TS	POPTR_0009s11970	POPTR_0009s11970 (11)	scaffold_9:9861408-9862851(+) (11)	NA	P0A573	Uncharacterized protein Mb2734	AT2G18360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g44960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g093180.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204616.1.S1_at	A	A1TS	POPTR_0009s11900	POPTR_0009s11900 (11)	scaffold_9:9794887-9795608(-) (11)	NA	NA	NA	AT2G21710.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g04230.1	"mTERF domain containing protein, expressed"	Medtr4g095610.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204617.1.S1_at	A	A1TS	POPTR_0009s11860	POPTR_0009s11860 (11)	scaffold_9:9766512-9766856(-) (11)	NA	NA	NA	AT1G75180.3	Erythronate-4-phosphate dehydrogenase family protein 	LOC_Os03g56420.1	expressed protein	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204618.1.S1_at	A	A1TS	POPTR_0009s11850	POPTR_0009s11850 (11)	scaffold_9:9755532-9756114(-) (11)	POPTR_0004s16140 (6)	Q6NKZ9	Probable receptor-like serine/threonine-protein kinase At4g34500	AT4G34500.1	Protein kinase superfamily protein 	LOC_Os03g12680.1	"protein kinase, putative, expressed"	Medtr3g162150.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204618.1.S1_s_at	A	A1TS	POPTR_0009s11850	POPTR_0009s11850 (11)	scaffold_9:9755208-9755541(-) (11)	NA	Q6NKZ9	Probable receptor-like serine/threonine-protein kinase At4g34500	AT4G34500.1	Protein kinase superfamily protein 	LOC_Os03g12680.1	"protein kinase, putative, expressed"	Medtr3g162150.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204619.1.S1_at	A	A1TS	POPTR_0009s11740	POPTR_0009s11740 (10)	scaffold_9:9686574-9687521(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204620.1.S1_at	A	A1TS	POPTR_0009s11710	POPTR_0009s11710 (11)	scaffold_9:9673931-9674364(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204621.1.S1_at	A	A1TS	POPTR_0009s11680	POPTR_0009s11680 (11)	scaffold_9:9665940-9666350(-) (11)	NA	NA	NA	AT1G49330.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os05g47620.1	conserved hypothetical protein	Medtr2g055770.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204622.1.S1_at	A	A1TS	POPTR_0009s11670	POPTR_0009s11670 (11)	scaffold_9:9664804-9665260(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204623.1.S1_at	A	A1TS	POPTR_0009s11660	POPTR_0009s11660 (11)	scaffold_9:9647458-9648067(-) (11)	POPTR_0004s15980 (7)	Q9SXA1	Phosphatidylinositol 4-kinase alpha	AT1G49340.1	Phosphatidylinositol 3- and 4-kinase family protein 	LOC_Os03g50320.1	"phosphatidylinositol 4-kinase PI4K, putative, expressed"	Medtr3g159720.1	Ribosomal protein L2; Protein kinase-like; ; 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0004428|inositol or phosphatidylinositol kinase activity"	NA
PtpAffx.204624.1.S1_at	A	A1TS	POPTR_0009s11650	POPTR_0009s11650 (11)	scaffold_9:9643732-9644215(+) (11)	NA	Q8VZ80	Polyol transporter 5	AT3G18830.1	polyol/monosaccharide transporter 5 	LOC_Os07g39350.1	"transporter family protein, putative, expressed"	Medtr3g159730.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.204625.1.S1_at	A	A1TS	POPTR_0009s11640	POPTR_0009s11640 (11)	scaffold_9:9623031-9623599(-) (11)	NA	Q9LHN5	Putative pentatricopeptide repeat-containing protein At3g18840	AT3G18840.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g56400.1	"pentatricopeptide, putative, expressed"	Medtr8g077070.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204626.1.S1_at	A	A1MS	POPTR_0009s11600	POPTR_0009s11600 (11)	scaffold_9:9605230-9606008(-) (11)	NA	Q39XL1	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os03g53730.1	"flavoprotein wrbA, putative, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204627.1.S1_at	A	A1TS	POPTR_0009s11580	POPTR_0009s11580 (11)	scaffold_9:9598296-9600106(-) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204628.1.S1_at	A	A1TS	POPTR_0009s11570	POPTR_0009s11570 (11)	scaffold_9:9592827-9593040(+) (11)	NA	NA	NA	AT1G54930.1	GRF zinc finger / Zinc knuckle protein 	LOC_Os03g57260.1	"GRF zinc finger family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204628.1.S1_s_at	A	A2TS	POPTR_0009s11570	POPTR_0009s11570 (11)//POPTR_1340s00200 (11)	scaffold_1340:2177-2714(-) (11)//scaffold_9:9592679-9593216(+) (11)	NA	NA	NA	AT1G54930.1	GRF zinc finger / Zinc knuckle protein 	LOC_Os03g57260.1	"GRF zinc finger family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204629.1.S1_at	A	A1TS	POPTR_1340s00200	POPTR_1340s00200 (11)	scaffold_1340:2353-2567(-) (11)	NA	NA	NA	AT5G13920.1	GRF zinc finger / Zinc knuckle protein 	LOC_Os03g57260.1	"GRF zinc finger family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204630.1.S1_at	A	A1TS	POPTR_0009s11550	POPTR_0009s11550 (11)	scaffold_9:9571184-9571439(-) (11)	NA	Q9SYZ7	UPF0496 protein At4g34320	AT4G34320.1	Protein of unknown function (DUF677) 	LOC_Os03g10240.2	"DUF677 domain containing protein, putative, expressed"	Medtr5g019340.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204631.1.S1_at	A	A1TS	POPTR_0009s11520	POPTR_0009s11520 (11)	scaffold_9:9551347-9551428(-) (11)	NA	P27612	Phospholipase A-2-activating protein	AT3G18860.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g03160.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204632.1.S1_at	A	A2TS	POPTR_0009s11510	POPTR_0009s11510 (11)//POPTR_0580s00200 (10)	scaffold_580:2260-2744(-) (11)//scaffold_9:9547564-9548048(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os01g06520.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr5g093760.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.204633.1.S1_at	A	A1TS	POPTR_0009s11470	POPTR_0009s11470 (11)	scaffold_9:9517730-9518990(+) (11)	NA	P0C7Q8	Protein DA1	AT1G19270.1	DA1 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr5g018830.1	"LIM, zinc-binding; Ubiquitin interacting motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204635.1.S1_at	A	A1TS	POPTR_0009s11440	POPTR_0009s11440 (9)	scaffold_9:9506857-9507331(-) (11)	NA	NA	NA	AT4G34360.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204636.1.S1_at	A	A1TS	POPTR_0009s11420	POPTR_0009s11420 (11)	scaffold_9:9491515-9492086(-) (11)	NA	NA	NA	AT5G66600.2	"Protein of unknown function, DUF547 "	LOC_Os03g55890.1	"ternary complex factor MIP1, putative, expressed"	AC233653_9.1	Protein of unknown function DUF547 AC233653.2 46326-50755 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204637.1.S1_at	A	A1TS	POPTR_0009s11400	POPTR_0009s11400 (11)	scaffold_9:9484004-9485917(-) (11)	NA	Q947C5	Non-symbiotic hemoglobin 1	AT2G16060.1	hemoglobin 1 	LOC_Os03g13140.1	"non-symbiotic hemoglobin 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204638.1.S1_at	A	A1TS	POPTR_0009s11380	POPTR_0009s11380 (11)	scaffold_9:9479461-9479917(+) (11)	NA	NA	NA	AT5G66580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g03080.1	expressed protein	Medtr5g018720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204639.1.S1_at	A	A1TS	POPTR_0009s11370	POPTR_0009s11370 (11)	scaffold_9:9469448-9469958(+) (11)	NA	NA	NA	AT2G23690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os06g41940.1	expressed protein	Medtr5g018720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204641.1.S1_at	A	A1TS	POPTR_0009s11310	POPTR_0009s11310 (11)	scaffold_9:9451685-9452269(+) (11)	NA	Q67YI6	RING-H2 finger protein ATL65	AT3G18930.2	RING/U-box superfamily protein 	LOC_Os12g40460.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g123770.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204642.1.S1_s_at	A	A1TS	POPTR_0009s11270	POPTR_0009s11270 (11)	scaffold_9:9415651-9416021(-) (11)	NA	P90648	Myosin heavy chain kinase B	AT3G18950.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52870.1	"WD-40 repeat family protein, putative, expressed"	Medtr4g093020.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204643.1.S1_s_at	A	A1TS	POPTR_0009s11210	POPTR_0009s11210 (11)	scaffold_9:9389181-9389468(-) (11)	NA	NA	NA	AT1G49470.1	Family of unknown function (DUF716)  	LOC_Os08g36040.1	"plant viral response family protein, putative, expressed"	Medtr4g092830.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204644.1.S1_at	A	A1TS	POPTR_0009s11170	POPTR_0009s11170 (9)	scaffold_9:9376908-9377394(+) (9)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	NA	NA	Medtr4g092810.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.204645.1.S1_at	A	A1TS	POPTR_0009s11160	POPTR_0009s11160 (11)	scaffold_9:9370835-9371631(+) (11)	NA	Q96GN5	Cell division cycle-associated 7-like protein	AT2G23530.1	Zinc-finger domain of monoamine-oxidase A repressor R1 	LOC_Os11g36030.1	"protein binding protein, putative, expressed"	Medtr4g128660.1	protein binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204646.1.S1_at	A	A1TS	POPTR_0009s11150	POPTR_0009s11150 (11)	scaffold_9:9363025-9366114(+) (11)	NA	NA	NA	AT2G15900.1	"Phox-associated domain;Phox-like;Sorting nexin, C-terminal "	LOC_Os11g06040.1	"PX domain containing protein, putative, expressed"	Medtr4g128670.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.204647.1.S1_at	A	A1TS	POPTR_0009s11130	POPTR_0009s11130 (11)	scaffold_9:9345405-9346089(-) (11)	NA	Q9LJ64	Pollen-specific leucine-rich repeat extensin-like protein 1	AT3G19020.1	Leucine-rich repeat (LRR) family protein 	LOC_Os12g35710.1	"uncharacterized protein At4g06744 precursor, putative, expressed"	Medtr3g148740.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.204648.1.S1_at	A	A1TS	POPTR_0009s11060	POPTR_0009s11060 (11)	scaffold_9:9318719-9319281(-) (11)	NA	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.204649.1.S1_at	A	A1TS	POPTR_0009s11020	POPTR_0009s11020 (11)	scaffold_9:9303701-9305101(-) (11)	NA	NA	NA	AT3G19050.1	phragmoplast orienting kinesin 2 	LOC_Os12g39980.1	"kinesin motor domain containing protein, putative, expressed"	Medtr4g128980.1	"Kinesin, motor region; Kinesin-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204650.1.S1_at	A	A1TS	POPTR_0009s11000	POPTR_0009s11000 (11)	scaffold_9:9287683-9288168(-) (11)	NA	Q9XIL5	Pentatricopeptide repeat-containing protein At2g15820	AT2G15820.1	endonucleases 	LOC_Os02g47360.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g032010.1	LAGLIDADG DNA endonuclease 	NA	GO:0004519|endonuclease activity	NA
PtpAffx.204652.1.S1_at	A	A1TS	POPTR_0009s10970	POPTR_0009s10970 (11)	scaffold_9:9260969-9262198(-) (11)	NA	Q5XI01	La-related protein 7	AT3G19090.1	RNA-binding protein 	LOC_Os03g36900.1	expressed protein	Medtr4g128970.1	"RNA-binding protein Lupus La; Ataxin-2, C-terminal; Winged helix repressor DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204653.1.S1_at	A	A1TS	POPTR_0009s10950	POPTR_0009s10950 (11)	scaffold_9:9250010-9250352(-) (11)	NA	NA	NA	AT2G26520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g129070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204654.1.S1_at	A	A1TS	POPTR_0009s10920	POPTR_0009s10920 (11)	scaffold_9:9229320-9230081(+) (11)	NA	NA	NA	AT2G15780.1	Cupredoxin superfamily protein 	LOC_Os06g11310.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g129110.1	Blue (type 1) copper domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204655.1.S1_at	A	A1TS	POPTR_0009s10910	POPTR_0009s10910 (11)	scaffold_9:9226084-9227002(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204656.1.S1_at	A	A1TS	POPTR_0009s10900	POPTR_0009s10900 (11)	scaffold_9:9222818-9222891(-) (11)	NA	Q9BWG6	Sodium channel modifier 1	NA	NA	LOC_Os08g37260.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204656.1.S1_s_at	A	A1TS	POPTR_0009s10900	POPTR_0009s10900 (11)	scaffold_9:9223191-9223593(-) (11)	NA	Q9BWG6	Sodium channel modifier 1	NA	NA	LOC_Os08g37260.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204656.1.S1_x_at	A	A1TS	POPTR_0009s10900	POPTR_0009s10900 (11)	scaffold_9:9222810-9223591(-) (11)	NA	Q9BWG6	Sodium channel modifier 1	NA	NA	LOC_Os08g37260.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204657.1.S1_at	A	A1TS	POPTR_0009s10870	POPTR_0009s10870 (11)	scaffold_9:9210411-9210948(-) (11)	NA	Q9FIX3	Pentatricopeptide repeat-containing protein At5g39710	AT5G39710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g05920.1	"Rf1, mitochondrial precursor, putative, expressed"	Medtr3g024680.1	Chaperonin Cpn60/TCP-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204658.1.S1_at	A	A1TS	POPTR_0009s10830	POPTR_0009s10830 (11)	scaffold_9:9195890-9196442(+) (11)	NA	NA	NA	AT2G15760.1	Protein of unknown function (DUF1645) 	LOC_Os02g52380.1	"DUF1645 domain containing protein, putative, expressed"	Medtr4g129240.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204659.1.S1_at	A	A1TS	POPTR_0009s10770	POPTR_0009s10770 (11)	scaffold_9:9158820-9159157(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g012220.1	"Protein of unknown function DUF784, Arabidopsis thaliana "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204660.1.S1_at	A	A1TS	POPTR_0009s10740	POPTR_0009s10740 (11)	scaffold_9:9151739-9151985(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204661.1.S1_s_at	A	A1TS	POPTR_0009s10710	POPTR_0009s10710 (11)	scaffold_9:9138377-9139133(-) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G19190.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g37060.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129340.1	"CXE carboxylesterase, putative "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.204662.1.S1_at	A	A1TS	POPTR_0009s10610	POPTR_0009s10610 (11)	scaffold_9:9077730-9078203(-) (11)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.204664.1.S1_at	A	A1TS	POPTR_0009s10580	POPTR_0009s10580 (11)	scaffold_9:9065562-9066215(+) (11)	NA	Q8BGC4	Zinc-binding alcohol dehydrogenase domain-containing protein 2	AT1G49670.1	ARP protein (REF) 	LOC_Os09g28570.1	"zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed"	Medtr4g129440.1	"Alcohol dehydrogenase superfamily, zinc-containing; Short-chain dehydrogenase/reductase SDR; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.204664.1.S1_s_at	A	A1TS	POPTR_0009s10580	POPTR_0009s10580 (11)	scaffold_9:9063828-9065539(+) (11)	NA	Q8BGC4	Zinc-binding alcohol dehydrogenase domain-containing protein 2	AT1G49670.1	ARP protein (REF) 	LOC_Os09g28570.1	"zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed"	Medtr4g129440.1	"Alcohol dehydrogenase superfamily, zinc-containing; Short-chain dehydrogenase/reductase SDR; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.204666.1.S1_at	A	A1TS	POPTR_0009s10570	POPTR_0009s10570 (11)	scaffold_9:9043439-9043799(-) (11)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204667.1.S1_at	A	A1TS	POPTR_0009s10540	POPTR_0009s10540 (11)	scaffold_9:9026960-9027465(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204668.1.S1_at	A	A1TS	POPTR_0009s10530	POPTR_0009s10530 (11)	scaffold_9:9023769-9024318(+) (11)	NA	Q9ZQE6	Calmodulin-like protein 1	AT2G15680.1	Calcium-binding EF-hand family protein 	LOC_Os05g13580.1	"OsCML18 - Calmodulin-related calcium sensor protein, expressed"	Medtr4g129610.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204669.1.S1_at	A	A1TS	POPTR_0009s10510	POPTR_0009s10510 (11)	scaffold_9:9016255-9017381(+) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT3G19230.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g08610.1	"leucine-rich repeat family protein, putative, expressed"	Medtr4g129630.1	"leucine-rich repeat family protein, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.204670.1.S1_at	A	A1TS	POPTR_0009s10470	POPTR_0009s10470 (11)	scaffold_9:9000404-9001003(+) (11)	NA	Q9SZ06	Ethylene-responsive transcription factor ERF109	AT4G34410.1	redox responsive transcription factor 1 	LOC_Os08g36920.1	"AP2 domain containing protein, expressed"	Medtr4g129660.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.204671.1.S1_at	A	A1TS	POPTR_0009s10460	POPTR_0009s10460 (11)	scaffold_9:8990307-8991752(+) (11)	NA	Q9LJK3	LAG1 longevity assurance homolog 2	AT3G19260.1	LAG1 homologue 2 	LOC_Os03g15750.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.204672.1.S1_at	A	A1MS	POPTR_0009s10440	POPTR_0009s10440 (9)	scaffold_9:8958965-8959488(+) (11)	NA	P38500	"Ferredoxin--nitrite reductase, chloroplastic"	AT2G15620.1	nitrite reductase 1 	LOC_Os01g25484.2	"ferredoxin--nitrite reductase, putative, expressed"	Medtr4g129810.1	Ferredoxin-nitrite reductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0051536|iron-sulfur cluster binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.204673.1.S1_at	A	A1TS	POPTR_0009s10420	POPTR_0009s10420 (11)	scaffold_9:8945486-8946853(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g129860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204674.1.S1_at	A	A1TS	POPTR_0009s10410	POPTR_0009s10410 (11)	scaffold_9:8940431-8940886(-) (11)	NA	NA	NA	AT4G33985.1	Protein of unknown function (DUF1685) 	LOC_Os02g52770.1	expressed protein	Medtr5g017390.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204675.1.S1_at	A	A1TS	POPTR_0009s10400	POPTR_0009s10400 (11)	scaffold_9:8932513-8933834(-) (11)	NA	Q9M7Q3	ABSCISIC ACID-INSENSITIVE 5-like protein 6	AT4G34000.2	abscisic acid responsive elements-binding factor 3 	LOC_Os09g28310.1	"bZIP transcription factor, putative, expressed"	Medtr4g129920.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.204676.1.S1_at	A	A1TS	POPTR_0009s10320	POPTR_0009s10320 (11)	scaffold_9:8888723-8889520(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT1G49740.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os04g35100.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204677.1.S1_at	A	A1TS	POPTR_0009s10280	POPTR_0009s10280 (11)	scaffold_9:8862098-8862644(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204679.1.S1_s_at	A	A1TS	POPTR_0009s10250	POPTR_0009s10250 (11)	scaffold_9:8850886-8851720(-) (11)	NA	NA	NA	AT4G34090.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g01920.1	expressed protein	Medtr7g127140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204680.1.S1_at	A	A1TS	POPTR_0009s10240	POPTR_0009s10240 (11)	scaffold_9:8848124-8848700(+) (11)	NA	Q9SLN1	Filament-like plant protein 7	AT3G19370.3	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204681.1.S1_at	A	A1TS	POPTR_0009s10230	POPTR_0009s10230 (11)	scaffold_9:8837488-8837632(-) (11)	NA	Q6ZQ89	E3 ubiquitin-protein ligase MARCH6	AT4G34100.2	RING/U-box superfamily protein 	LOC_Os06g43210.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130230.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204682.1.S1_at	A	A1TS	POPTR_0009s10200	POPTR_0009s10200 (11)	scaffold_9:8820973-8822132(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr4g130280.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204683.1.S1_at	A	A1MS	POPTR_0009s10110	POPTR_0009s10110 (11)	scaffold_9:8783885-8784123(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15480.1	UDP-glucosyl transferase 73B5 	LOC_Os01g08110.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204684.1.S1_at	A	A1TS	POPTR_0009s10100	POPTR_0009s10100 (11)	scaffold_9:8780611-8781267(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.1	UDP-glycosyltransferase 73B4 	LOC_Os01g41450.1	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein	Medtr4g130340.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204685.1.S1_at	A	A1TS	POPTR_0009s10040	POPTR_0009s10040 (10)	scaffold_9:8730650-8731113(-) (11)	NA	NA	NA	NA	NA	NA	NA	AC233660_3.1	hypothetical protein AC233660.2 18907-18340 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204686.1.S1_at	A	A1TS	POPTR_0009s10030	POPTR_0009s10030 (11)	scaffold_9:8729289-8729877(+) (11)	NA	P12255	Filamentous hemagglutinin	AT3G19430.1	late embryogenesis abundant protein-related / LEA protein-related 	LOC_Os01g73700.1	"RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed"	Medtr2g026650.1	Root cap 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204687.1.S1_at	A	A1MS	POPTR_0009s10010	POPTR_0009s10010 (10)	scaffold_9:8718043-8718679(+) (10)	NA	NA	NA	AT1G44542.1	Cyclase family protein 	LOC_Os09g02270.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204688.1.S1_at	A	A1TS	POPTR_0009s10000	POPTR_0009s10000 (11)	scaffold_9:8712128-8712393(-) (11)	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT2G15320.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g43250.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g021240.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.204689.1.S1_at	A	A1TS	POPTR_0009s09980	POPTR_0009s09980 (11)	scaffold_9:8702679-8704176(+) (11)	NA	P51823	ADP-ribosylation factor 2	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os05g41060.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g016470.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.204690.1.S1_at	A	A1TS	POPTR_0009s09940	POPTR_0009s09940 (10)	scaffold_9:8682975-8683813(+) (10)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os04g01980.1	"receptor protein kinase, putative, expressed"	Medtr3g147150.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204691.1.S1_at	A	A1MS	POPTR_0009s09900	POPTR_0009s09900 (9)	scaffold_9:8668922-8669795(+) (9)	NA	NA	NA	AT2G15270.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink). 	LOC_Os09g01690.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204692.1.S1_at	A	A1TS	POPTR_0009s09860	POPTR_0009s09860 (11)	scaffold_9:8632994-8634664(+) (11)	NA	Q9LT72	"RNA pseudourine synthase 4, mitochondrial"	AT3G19440.1	Pseudouridine synthase family protein 	LOC_Os09g01620.1	"RNA pseudouridine synthase, putative, expressed"	AC151525_3.1	Pseudouridine synthase AC151525.18 5587-7823 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.204693.1.S1_at	A	A1TS	POPTR_0009s09850	POPTR_0009s09850 (11)	scaffold_9:8623889-8624115(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204694.1.S1_at	A	A1TS	POPTR_0009s09840	POPTR_0009s09840 (11)	scaffold_9:8617436-8617904(-) (11)	NA	Q9MB73	Limonoid UDP-glucosyltransferase	AT2G23260.1	UDP-glucosyl transferase 84B1 	LOC_Os02g09510.1	"limonoid UDP-glucosyltransferase, putative, expressed"	Medtr5g016420.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204694.1.S1_s_at	A	A2TS	POPTR_0009s09840	POPTR_0009s09840 (11)//POPTR_0009s09810 (9)	scaffold_9:8579823-8580243(-) (11)//scaffold_9:8617560-8617972(-) (11)	NA	Q9MB73	Limonoid UDP-glucosyltransferase	AT2G23260.1	UDP-glucosyl transferase 84B1 	LOC_Os02g09510.1	"limonoid UDP-glucosyltransferase, putative, expressed"	Medtr5g016420.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204697.1.S1_at	A	A1TS	POPTR_0009s09770	POPTR_0009s09770 (11)	scaffold_9:8560104-8562138(+) (11)	NA	NA	NA	AT2G15220.1	Plant basic secretory protein (BSP) family protein 	LOC_Os10g34930.1	"secretory protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204699.1.S1_at	A	A1TS	POPTR_0009s09740	POPTR_0009s09740 (11)	scaffold_9:8537642-8538193(+) (11)	NA	Q9UBZ9	DNA repair protein REV1	AT5G44750.1	DNA-directed DNA polymerases 	LOC_Os06g47580.2	"REV1, putative, expressed"	Medtr5g005380.1	UMUC-like DNA-repair protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	GO:0005622|intracellular
PtpAffx.204700.1.S1_at	A	A1TS	POPTR_0009s09730	POPTR_0009s09730 (11)	scaffold_9:8529346-8529931(+) (11)	NA	Q9LT67	Transcription factor bHLH113	AT3G19500.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr2g122580.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.204700.1.S1_s_at	A	A1TS	POPTR_0009s09730	POPTR_0009s09730 (11)	scaffold_9:8529950-8530037(+) (11)	NA	Q9LT67	Transcription factor bHLH113	AT3G19500.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr2g122580.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.204700.1.S1_x_at	A	A1TS	POPTR_0009s09730	POPTR_0009s09730 (11)	scaffold_9:8529346-8529931(+) (11)	NA	Q9LT67	Transcription factor bHLH113	AT3G19500.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr2g122580.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.204701.1.S1_at	A	A1TS	POPTR_0009s09710	POPTR_0009s09710 (11)	scaffold_9:8515480-8516029(-) (11)	NA	NA	NA	AT2G15020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 72 Blast hits to 72 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g25850.1	expressed protein	Medtr5g090980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204702.1.S1_at	A	A1TS	POPTR_0009s09680	POPTR_0009s09680 (11)	scaffold_9:8497352-8498498(-) (11)	NA	NA	NA	AT4G34260.1	"1,2-alpha-L-fucosidases "	NA	NA	Medtr8g129740.1	"Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204703.1.S1_at	A	A1TS	POPTR_0009s09670	POPTR_0009s09670 (11)	scaffold_9:8495038-8496431(-) (11)	NA	NA	NA	AT1G07860.1	BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G07870.2); Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g079790.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204704.1.S1_at	A	A1TS	POPTR_0009s09650	POPTR_0009s09650 (11)	scaffold_9:8485296-8486760(-) (11)	NA	Q8L7W8	Alpha-L-fucosidase 2	AT4G34260.1	"1,2-alpha-L-fucosidases "	LOC_Os10g19880.1	"alpha-1,2-fucosidase, putative, expressed"	Medtr8g129740.1	"Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204705.1.S1_at	A	A1TS	POPTR_0009s09630	POPTR_0009s09630 (11)	scaffold_9:8474944-8475457(-) (11)	NA	Q39266	Zinc finger protein 7	AT1G24625.1	zinc finger protein 7 	LOC_Os12g39220.1	"ZOS12-08 - C2H2 zinc finger protein, expressed"	Medtr3g087170.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204706.1.S1_at	A	A1MS	POPTR_0009s09610	POPTR_0009s09610 (9)	scaffold_9:8465467-8467259(+) (9)	NA	P25010	G2/mitotic-specific cyclin C13-1 (Fragment)	AT1G47230.1	CYCLIN A3;4 	LOC_Os03g41100.1	"cyclin, putative, expressed"	Medtr1g023700.1	Cyclin-like; ; 	NA	NA	GO:0005634|nucleus
PtpAffx.204707.1.S1_at	A	A1TS	POPTR_0009s09600	POPTR_0009s09600 (11)	scaffold_9:8457299-8457684(+) (11)	NA	Q04996	Homeobox protein HAT3.1	AT3G19510.1	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g12400.1	"Homeobox domain containing protein, expressed"	Medtr2g042720.1	"Homeobox; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.204708.1.S1_at	A	A1TS	POPTR_0009s09550	POPTR_0009s09550 (11)	scaffold_9:8423351-8425068(+) (11)	NA	NA	NA	AT4G34280.1	transducin family protein / WD-40 repeat family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20471.2.S1_s_at	A	A1TS	POPTR_0001s31850	POPTR_0001s31850 (11)	scaffold_1:30208874-30209712(+) (11)	NA	Q9M3V8	40S ribosomal protein S6	AT5G10360.1	Ribosomal protein S6e 	LOC_Os03g27260.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.204712.1.S1_at	A	A1TS	POPTR_0009s09480	POPTR_0009s09480 (11)	scaffold_9:8372390-8372714(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g096810.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204713.1.S1_s_at	A	A1MA	POPTR_0006s23190	POPTR_0006s23190 (9)	scaffold_6:22010011-22010365(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204714.1.S1_at	A	A1TS	POPTR_0009s09460	POPTR_0009s09460 (11)	scaffold_9:8362570-8363005(+) (11)	NA	Q5UNY4	Uncharacterized protein L728	AT5G43400.1	"Uncharacterised conserved protein UCP015417,  vWA "	LOC_Os06g44240.1	"gp176, putative"	Medtr5g047770.1	Protein of unknown function T31B5_30_vWA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204715.1.S1_at	A	A1TS	POPTR_0009s09450	POPTR_0009s09450 (11)	scaffold_9:8359215-8359751(+) (11)	NA	NA	NA	AT5G43390.1	"Uncharacterised conserved protein UCP015417,  vWA "	LOC_Os09g32370.1	"gp176, putative, expressed"	Medtr5g047770.1	Protein of unknown function T31B5_30_vWA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204716.1.S1_at	A	A1MS	POPTR_0009s09430	POPTR_0009s09430 (11)	scaffold_9:8353376-8353487(+) (11)	NA	NA	NA	AT3G19550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g32290.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204716.1.S1_x_at	A	A1MS	POPTR_0009s09430	POPTR_0009s09430 (11)	scaffold_9:8353376-8353539(+) (11)	NA	NA	NA	AT3G19550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g32290.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204717.1.S1_at	A	A1TS	POPTR_0009s09370	POPTR_0009s09370 (11)	scaffold_9:8320335-8320750(+) (11)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g55450.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204718.1.S1_at	A	A1TS	POPTR_0009s09340	POPTR_0009s09340 (9)	scaffold_9:8304546-8306725(-) (9)	NA	Q8GXX0	FAD-linked sulfhydryl oxidase ERV1	AT1G49880.1	Erv1/Alr family protein 	LOC_Os03g10850.1	"FAD-linked sulfhydryl oxidase ALR, putative, expressed"	Medtr7g135760.1	Erv1/Alr 	GO:0055114|oxidation reduction	GO:0016972|thiol oxidase activity	NA
PtpAffx.204719.1.S1_at	A	A1TS	POPTR_0009s09310	POPTR_0009s09310 (11)	scaffold_9:8296797-8297499(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204720.1.S1_at	A	A1TS	POPTR_0009s09290	POPTR_0009s09290 (11)	scaffold_9:8284548-8286022(-) (11)	NA	NA	NA	AT3G19570.2	Family of unknown function (DUF566)  	LOC_Os03g10820.1	expressed protein	Medtr1g023430.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204722.1.S1_at	A	A1TS	POPTR_0009s09270	POPTR_0009s09270 (11)	scaffold_9:8278895-8279588(+) (11)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g015970.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204723.1.S1_at	A	A1TS	POPTR_0009s09230	POPTR_0009s09230 (11)	scaffold_9:8236718-8239282(+) (11)	NA	Q1JQB2	Mitotic checkpoint protein BUB3	AT3G19590.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g33580.1	"mitotic checkpoint protein, putative, expressed"	Medtr5g005250.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204723.1.S1_x_at	A	A1TS	POPTR_0009s09230	POPTR_0009s09230 (11)	scaffold_9:8236718-8239282(+) (11)	NA	Q1JQB2	Mitotic checkpoint protein BUB3	AT3G19590.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g33580.1	"mitotic checkpoint protein, putative, expressed"	Medtr5g005250.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204724.1.S1_x_at	A	A1TS	POPTR_0009s09220	POPTR_0009s09220 (11)	scaffold_9:8229287-8230153(-) (11)	NA	Q9N4Y9	Zinc finger protein-like 1 homolog	AT2G14835.2	RING/U-box superfamily protein 	LOC_Os10g20600.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g135130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204725.1.S1_at	A	A1TS	POPTR_0009s09210	POPTR_0009s09210 (10)	scaffold_9:8216800-8217840(-) (11)	NA	Q7XHI9	Transcription factor bHLH84	AT2G14760.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g42100.1	helix-loop-helix DNA-binding domain containing protein	Medtr5g005270.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.204727.1.S1_at	A	A1TS	POPTR_0009s09180	POPTR_0009s09180 (11)	scaffold_9:8201009-8201918(+) (11)	NA	NA	NA	AT1G27760.3	interferon-related developmental regulator family protein / IFRD protein family 	LOC_Os07g39900.1	"interferon-related developmental regulator, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204728.1.S1_at	A	A1TS	POPTR_0009s09160	POPTR_0009s09160 (11)	scaffold_9:8190330-8191021(-) (11)	NA	Q9SMX3	Mitochondrial outer membrane protein porin 2	AT5G67500.1	voltage dependent anion channel 2 	LOC_Os03g10510.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204729.1.S1_at	A	A1TS	POPTR_0009s09140	POPTR_0009s09140 (11)	scaffold_9:8183906-8184209(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204733.1.S1_at	A	A1TS	POPTR_0009s09100	POPTR_0009s09100 (11)	scaffold_9:8163356-8164185(-) (11)	NA	Q0H904	"Endo-1,4-beta-xylanase C"	AT4G33840.1	Glycosyl hydrolase family 10 protein 	LOC_Os03g10478.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr7g025710.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204734.1.S1_at	A	A1TS	POPTR_0009s09090	POPTR_0009s09090 (11)	scaffold_9:8157203-8157883(-) (11)	NA	Q12603	"Beta-1,4-xylanase"	AT4G33840.1	Glycosyl hydrolase family 10 protein 	LOC_Os03g10478.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr7g025710.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204735.1.S1_at	A	A1TS	POPTR_0009s09080	POPTR_0009s09080 (11)	scaffold_9:8151910-8152311(-) (11)	NA	Q0H904	"Endo-1,4-beta-xylanase C"	AT4G33860.1	Glycosyl hydrolase family 10 protein 	LOC_Os03g10478.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr7g025710.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204736.1.S1_at	A	A1TS	POPTR_0009s09070	POPTR_0009s09070 (11)	scaffold_9:8146824-8147737(-) (11)	NA	P26514	"Endo-1,4-beta-xylanase A"	AT4G33820.1	Glycosyl hydrolase superfamily protein 	LOC_Os03g10478.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr7g025710.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204737.1.S1_at	A	A1TS	POPTR_0009s09060	POPTR_0009s09060 (10)	scaffold_9:8142564-8143135(-) (10)	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204738.1.S1_at	A	A1TS	POPTR_0009s09030	POPTR_0009s09030 (9)	scaffold_9:8115616-8118190(+) (10)	NA	NA	NA	AT2G14680.3	myosin heavy chain-related 	LOC_Os03g31730.1	expressed protein	Medtr5g005400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204740.1.S1_at	A	A1TS	POPTR_0009s08980	POPTR_0009s08980 (11)	scaffold_9:8066094-8066691(-) (11)	NA	NA	NA	AT4G33800.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g005430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204741.1.S1_at	A	A1TS	POPTR_0009s08950	POPTR_0009s08950 (11)	scaffold_9:8050691-8051232(+) (11)	NA	NA	NA	AT5G14930.2	senescence-associated gene 101 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr6g008690.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204742.1.S1_at	A	A1TS	POPTR_0009s08940	POPTR_0009s08940 (11)	scaffold_9:8042948-8043415(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204743.1.S1_at	A	A1TS	POPTR_0009s08930	POPTR_0009s08930 (11)	scaffold_9:8040104-8040625(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204744.1.S1_at	A	A1TS	POPTR_0009s08910	POPTR_0009s08910 (11)	scaffold_9:8027295-8027651(+) (11)	NA	Q91YJ3	Thymocyte nuclear protein 1	AT2G14660.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0310 (InterPro:IPR002740); Has 2761 Blast hits to 2761 proteins in 686 species: Archae - 5; Bacteria - 1143; Metazoa - 73; Fungi - 78; Plants - 42; Viruses - 0; Other Eukaryotes - 1420 (source: NCBI BLink). 	LOC_Os03g47260.1	expressed protein	Medtr5g005510.1	Protein of unknown function DUF55 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204745.1.S1_at	A	A1TS	POPTR_0009s08890	POPTR_0009s08890 (11)	scaffold_9:8018358-8018930(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204746.1.S1_at	A	A1TS	POPTR_0009s08880	POPTR_0009s08880 (11)	scaffold_9:8015816-8016988(+) (11)	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	LOC_Os01g34780.2	"protein binding protein, putative, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0030528|transcription regulator activity||GO:0005515|protein binding	NA
PtpAffx.204747.1.S1_at	A	A1TS	POPTR_0009s08880	POPTR_0009s08880 (11)	scaffold_9:8008512-8008989(+) (11)	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	LOC_Os01g34780.2	"protein binding protein, putative, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0030528|transcription regulator activity||GO:0005515|protein binding	NA
PtpAffx.204748.1.S1_at	A	A1TS	POPTR_0009s08870	POPTR_0009s08870 (11)	scaffold_9:7999078-7999663(+) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G02645.1	Plant protein of unknown function (DUF247) 	LOC_Os06g08120.1	"plant protein of unknown function domain containing protein, expressed"	Medtr4g006270.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204749.1.S1_at	A	A1TS	POPTR_0009s08860	POPTR_0009s08860 (11)	scaffold_9:7995854-7997385(-) (11)	NA	NA	NA	AT4G33780.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g12930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204750.1.S1_at	A	A1TS	POPTR_0009s08840	POPTR_0009s08840 (11)	scaffold_9:7988316-7989093(+) (11)	NA	P92934	Amino acid permease 6	AT5G49630.1	amino acid permease 6 	LOC_Os07g04180.1	"amino acid transporter, putative, expressed"	Medtr3g127950.1	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204752.1.S1_at	A	A1TS	POPTR_0009s08750	POPTR_0009s08750 (11)	scaffold_9:7901006-7901789(-) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os09g02830.1	OsMADS78 - MADS-box family gene with M-alpha type-box	Medtr8g047650.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.204753.1.S1_at	A	A1TS	POPTR_0009s08740	POPTR_0009s08740 (11)	scaffold_9:7896622-7897135(-) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os09g02830.1	OsMADS78 - MADS-box family gene with M-alpha type-box	Medtr3g109260.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.204754.1.S1_at	A	A1TS	POPTR_0009s08720	POPTR_0009s08720 (11)	scaffold_9:7886146-7886579(+) (11)	NA	NA	NA	AT4G33740.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 138092 Blast hits to 73110 proteins in 2951 species: Archae - 732; Bacteria - 17903; Metazoa - 48520; Fungi - 16808; Plants - 7078; Viruses - 1044; Other Eukaryotes - 46007 (source: NCBI BLink). 	LOC_Os06g36050.1	expressed protein	AC235005_3.1	hypothetical protein AC235005.1 9201-11167 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204756.1.S1_at	A	A1TS	POPTR_0009s08710	POPTR_0009s08710 (11)	scaffold_9:7878321-7878880(-) (11)	NA	Q9ZVK1	Probable xyloglucan endotransglucosylase/hydrolase protein 10	AT2G14620.1	xyloglucan endotransglucosylase/hydrolase 10 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g102140.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.204757.1.S1_at	A	A1TS	POPTR_0009s08700	POPTR_0009s08700 (11)	scaffold_9:7874617-7874993(+) (11)	NA	P11670	Basic form of pathogenesis-related protein 1	AT1G50060.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os06g24290.1	SCP-like extracellular protein	Medtr4g122190.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204758.1.S1_at	A	A1TS	POPTR_0009s08690	POPTR_0009s08690 (11)	scaffold_9:7870435-7870600(+) (11)	NA	NA	NA	AT1G47960.1	cell wall / vacuolar inhibitor of fructosidase 1 	NA	NA	Medtr8g136770.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.204758.1.S1_s_at	A	A1TS	POPTR_0009s08690	POPTR_0009s08690 (11)	scaffold_9:7870036-7870406(+) (11)	NA	NA	NA	AT1G47960.1	cell wall / vacuolar inhibitor of fructosidase 1 	NA	NA	Medtr8g136770.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.204759.1.S1_at	A	A1TS	POPTR_0009s08560	POPTR_0009s08560 (11)	scaffold_9:7799196-7799588(+) (11)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os12g40530.1	"transposon protein, putative, unclassified, expressed"	Medtr7g143350.1	"Plant MuDR transposase; Zinc finger, SWIM-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204760.1.S1_s_at	A	A1MS	POPTR_0009s08550	POPTR_0009s08550 (11)	scaffold_9:7793898-7794106(+) (11)	NA	NA	NA	AT4G17000.1	unknown protein; Has 2862 Blast hits to 2331 proteins in 349 species: Archae - 6; Bacteria - 408; Metazoa - 833; Fungi - 223; Plants - 134; Viruses - 7; Other Eukaryotes - 1251 (source: NCBI BLink). 	LOC_Os03g56070.1	expressed protein	Medtr2g010530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204761.1.S1_at	A	A1TS	POPTR_0009s08550	POPTR_0009s08550 (9)	scaffold_9:7792785-7793643(+) (11)	NA	NA	NA	AT4G17000.1	unknown protein; Has 2862 Blast hits to 2331 proteins in 349 species: Archae - 6; Bacteria - 408; Metazoa - 833; Fungi - 223; Plants - 134; Viruses - 7; Other Eukaryotes - 1251 (source: NCBI BLink). 	LOC_Os03g56070.1	expressed protein	Medtr2g010530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204762.1.S1_at	A	A1TS	POPTR_0009s08530	POPTR_0009s08530 (11)	scaffold_9:7782246-7782488(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204763.1.S1_at	A	A1TS	POPTR_0009s08500	POPTR_0009s08500 (11)	scaffold_9:7760725-7761157(+) (11)	NA	Q9T072	Transcription factor bHLH25	AT4G37850.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g51580.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g010480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.204764.1.S1_at	A	A1TS	POPTR_0009s08490	POPTR_0009s08490 (11)	scaffold_9:7753088-7754064(-) (11)	NA	Q04212	D-arabinose 1-dehydrogenase	AT4G33670.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os12g29760.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g121930.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.204765.1.S1_at	A	A1TS	POPTR_0009s08450	POPTR_0009s08450 (11)	scaffold_9:7731090-7731633(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g043920.1	"Peptidase aspartic, active site; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.204766.1.S1_at	A	A1TS	POPTR_0009s08430	POPTR_0009s08430 (11)	scaffold_9:7723667-7725184(+) (11)	NA	Q9M0Z3	"K(+) efflux antiporter 3, chloroplastic"	AT4G04850.2	K+ efflux antiporter 3 	LOC_Os12g42300.1	"potasium efflux antiporter protein, putative, expressed"	Medtr4g121870.1	TrkA-N; Sodium/hydrogen exchanger 	GO:0006813|potassium ion transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.204767.1.S1_at	A	A1TS	POPTR_0009s08410	POPTR_0009s08410 (11)	scaffold_9:7706110-7706448(-) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.204768.1.S1_at	A	A1MS	POPTR_0009s08370	POPTR_0009s08370 (9)	scaffold_9:7684334-7684589(-) (9)	NA	NA	NA	AT5G64430.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os02g56480.1	"PB1 domain containing protein, expressed"	Medtr2g010210.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204769.1.S1_at	A	A1TS	POPTR_0009s08350	POPTR_0009s08350 (11)	scaffold_9:7671856-7672091(-) (11)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT5G10550.1	global transcription factor group E2 	LOC_Os04g53170.1	"bromodomain containing protein, expressed"	Medtr4g121780.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204769.1.S1_x_at	A	A1TS	POPTR_0009s08350	POPTR_0009s08350 (10)	scaffold_9:7671614-7672091(-) (10)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT5G10550.1	global transcription factor group E2 	LOC_Os04g53170.1	"bromodomain containing protein, expressed"	Medtr4g121780.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204771.1.S1_at	A	A1TS	POPTR_0009s08320	POPTR_0009s08320 (11)	scaffold_9:7653820-7653945(+) (11)	NA	Q01899	"Heat shock 70 kDa protein, mitochondrial"	AT5G09590.1	mitochondrial HSO70 2 	LOC_Os02g53420.1	"DnaK family protein, putative, expressed"	Medtr2g010100.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204771.1.S1_x_at	A	A1TS	POPTR_0009s08320	POPTR_0009s08320 (11)	scaffold_9:7653396-7653945(+) (11)	NA	Q01899	"Heat shock 70 kDa protein, mitochondrial"	AT5G09590.1	mitochondrial HSO70 2 	LOC_Os02g53420.1	"DnaK family protein, putative, expressed"	Medtr2g010100.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204772.1.S1_at	A	A1TS	POPTR_0009s08270	POPTR_0009s08270 (9)	scaffold_9:7613418-7615628(+) (9)	NA	Q6EP49	MADS-box transcription factor 27	AT4G37940.1	AGAMOUS-like 21 	LOC_Os02g36924.1	"OsMADS27 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g075960.1	"Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.204773.1.S1_at	A	A1TS	POPTR_0009s08250	POPTR_0009s08250 (11)	scaffold_9:7595750-7596085(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g17070.1	hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204774.1.S1_at	A	A1TS	POPTR_0009s08240	POPTR_0009s08240 (11)	scaffold_9:7581181-7581760(-) (11)	NA	NA	NA	AT1G70750.1	"Protein of unknown function, DUF593 "	LOC_Os03g50100.1	expressed protein	Medtr4g121590.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204775.1.S1_at	A	A1TS	POPTR_0009s08230	POPTR_0009s08230 (11)	scaffold_9:7570838-7571675(-) (11)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.1	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.204776.1.S1_at	A	A1TS	POPTR_0009s08210	POPTR_0009s08210 (11)	scaffold_9:7557382-7557911(+) (11)	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os11g38920.2	"HVA22, putative, expressed"	Medtr4g121370.1	TB2/DP1 and HVA22 related protein 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.204777.1.S1_at	A	A1TS	POPTR_0009s08170	POPTR_0009s08170 (11)	scaffold_9:7527665-7528167(+) (11)	NA	Q1HDT2	Cation/H(+) antiporter 24	AT5G37060.1	cation/H+ exchanger 24 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr4g142890.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.204778.1.S1_at	A	A1TS	POPTR_0009s08120	POPTR_0009s08120 (11)	scaffold_9:7481881-7482232(+) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204779.1.S1_at	A	A1TS	POPTR_0009s08100	POPTR_0009s08100 (11)	scaffold_9:7472660-7473301(-) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204780.1.S1_at	A	A1TS	POPTR_0009s08090	POPTR_0009s08090 (11)	scaffold_9:7470436-7470966(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT2G30140.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g080970.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204781.1.S1_at	A	A1TS	POPTR_0009s08070	POPTR_0009s08070 (11)	scaffold_9:7464609-7464832(-) (11)	NA	NA	NA	AT1G76750.1	Protein of unknown function (DUF1278) 	LOC_Os03g18530.1	"ECAGL1 - ECA1 gametogenesis related family protein precursor, expressed"	Medtr3g064370.1	Protein of unknown function DUF1278 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204782.1.S1_at	A	A1TS	POPTR_0009s08060	POPTR_0009s08060 (11)	scaffold_9:7460969-7461440(+) (11)	NA	Q8LBW3	LOB domain-containing protein 12	AT2G30130.1	Lateral organ boundaries (LOB) domain family protein 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g090730.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204782.1.S1_s_at	A	A2TS	POPTR_0001s28840	POPTR_0001s28840 (11)//POPTR_0009s08060 (11)	scaffold_1:27621116-27621601(+) (11)//scaffold_9:7460979-7461451(+) (11)	NA	Q8LBW3	LOB domain-containing protein 12	AT2G30130.1	Lateral organ boundaries (LOB) domain family protein 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g090730.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204783.1.S1_at	A	A1TS	POPTR_0009s08030	POPTR_0009s08030 (11)	scaffold_9:7442116-7442662(+) (11)	NA	Q9FGH4	"Glucan endo-1,3-beta-glucosidase 9"	AT5G58480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g18520.1	"glucan endo-1,3-beta-glucosidase 9 precursor, putative, expressed"	Medtr3g034360.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204784.1.S1_at	A	A1TS	POPTR_0009s07930	POPTR_0009s07930 (11)	scaffold_9:7341330-7341874(-) (11)	NA	Q5NE24	Nodulation-signaling pathway 2 protein	AT4G08250.1	GRAS family transcription factor 	LOC_Os03g15680.1	"nodulation-signaling pathway 2 protein, putative"	Medtr7g075860.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204785.1.S1_at	A	A1TS	POPTR_0009s07920	POPTR_0009s07920 (9)	scaffold_9:7333368-7334848(-) (11)	NA	C0LGU7	Probable LRR receptor-like serine/threonine-protein kinase At5g45840	AT5G45840.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr3g094640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.204786.1.S1_at	A	A1TS	POPTR_0009s07910	POPTR_0009s07910 (11)	scaffold_9:7328679-7329311(+) (11)	NA	O65020	Ethylene-overproduction protein 1	AT3G51770.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os03g18360.1	"BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr4g012110.1	"Ethylene-overproduction protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204787.1.S1_at	A	A1TS	POPTR_0009s07900	POPTR_0009s07900 (11)	scaffold_9:7319873-7320237(+) (11)	NA	Q0WNN7	"Pentatricopeptide repeat-containing protein At2g30100, chloroplastic"	AT2G30100.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os05g28500.1	"ubiquitin family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204788.1.S1_at	A	A1MS	POPTR_0009s07890	POPTR_0009s07890 (9)	scaffold_9:7311148-7312011(-) (10)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G38300.1	myb-like HTH transcriptional regulator family protein 	LOC_Os12g01490.1	"MYB family transcription factor, putative, expressed"	Medtr7g075810.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204789.1.S1_at	A	A1TS	POPTR_0009s07880	POPTR_0009s07880 (11)	scaffold_9:7303357-7304122(+) (11)	NA	NA	NA	AT2G42380.2	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g11350.1	"bZIP transcription factor domain containing protein, expressed"	AC233675_20.1	Basic leucine zipper AC233675.1 92514-95337 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.204790.1.S1_at	A	A1TS	POPTR_0009s07870	POPTR_0009s07870 (11)	scaffold_9:7298316-7299286(+) (11)	NA	NA	NA	AT2G42380.2	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g55150.1	"bZIP transcription factor domain containing protein, expressed"	AC233675_20.1	Basic leucine zipper AC233675.1 92514-95337 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.204791.1.S1_at	A	A1TS	POPTR_0009s07850	POPTR_0009s07850 (10)	scaffold_9:7281867-7282067(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204792.1.S1_at	A	A1TS	POPTR_0009s07820	POPTR_0009s07820 (11)	scaffold_9:7263570-7264110(-) (11)	NA	NA	NA	AT2G30090.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g55530.1	"HLS, putative, expressed"	Medtr5g015900.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.204793.1.S1_x_at	A	A1TS	POPTR_0009s07800	POPTR_0009s07800 (11)	scaffold_9:7245499-7245642(+) (11)	POPTR_0001s28610 (7)	Q8L9T5	RING-H2 finger protein ATL2	AT3G16720.1	TOXICOS EN LEVADURA 2 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g080230.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204794.1.S1_at	A	A1TS	POPTR_0009s07790	POPTR_0009s07790 (11)	scaffold_9:7242721-7243925(+) (11)	NA	Q91348	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase"	AT1G07110.1	"fructose-2,6-bisphosphatase "	LOC_Os05g07130.1	"6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed"	Medtr5g080220.1	"Fructose-2,6-bisphosphatase; "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0006000|fructose metabolic process	GO:0003873|6-phosphofructo-2-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204795.1.S1_at	A	A1MS	POPTR_0009s07790	POPTR_0009s07790 (11)	scaffold_9:7234925-7235523(+) (11)	NA	Q91348	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase"	AT1G07110.1	"fructose-2,6-bisphosphatase "	LOC_Os05g07130.1	"6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed"	Medtr5g080220.1	"Fructose-2,6-bisphosphatase; "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0006000|fructose metabolic process	GO:0003873|6-phosphofructo-2-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204796.1.S1_at	A	A1TS	POPTR_0009s07760	POPTR_0009s07760 (11)	scaffold_9:7214362-7215061(+) (11)	NA	O22397	Potassium transporter 1	AT2G30070.1	potassium transporter 1 	LOC_Os07g47350.2	"potassium transporter, putative, expressed"	Medtr5g080150.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.204797.1.S1_at	A	A1TS	POPTR_0009s07730	POPTR_0009s07730 (11)	scaffold_9:7179228-7179622(+) (11)	NA	Q54R82	Mitogen-activated protein kinase kinase kinase A	AT1G07150.1	mitogen-activated protein kinase kinase kinase 13 	LOC_Os03g18170.1	"STE_MEKK_ste11_MAP3K.13 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g079860.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204799.1.S1_at	A	A1TS	POPTR_0009s07690	POPTR_0009s07690 (11)	scaffold_9:7126484-7126662(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2048.1.S1_a_at	A	A1TS	POPTR_0003s13150	POPTR_0003s13150 (10)	scaffold_3:13557381-13557770(+) (10)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2048.1.S1_x_at	A	A1TS	POPTR_0003s13150	POPTR_0003s13150 (11)	scaffold_3:13557241-13557768(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2048.2.S1_a_at	A	A2TS	POPTR_0001s09780	POPTR_0001s09780 (11)//POPTR_0003s13150 (11)	scaffold_1:7522691-7523052(+) (11)//scaffold_3:13557298-13557662(+) (11)	NA	NA	NA	AT1G69230.2	SPIRAL1-like2 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2048.2.S1_at	A	A1TS	POPTR_0001s09780	POPTR_0001s09780 (11)	scaffold_1:7522614-7523158(+) (11)	NA	NA	NA	AT1G69230.2	SPIRAL1-like2 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2048.5.A1_at	A	A1TS	POPTR_0006s13630	POPTR_0006s13630 (9)	scaffold_6:10834295-10834451(+) (9)	NA	NA	NA	AT5G02770.1	unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). 	LOC_Os03g17490.2	expressed protein	AC235022_12.1	hypothetical protein AC235022.1 78747-76265 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204801.1.S1_at	A	A1TS	POPTR_0997s00200	POPTR_0997s00200 (9)	scaffold_997:1977-2339(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204802.1.S1_at	A	A1TS	POPTR_0009s07640	POPTR_0009s07640 (11)	scaffold_9:7095711-7096350(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g065520.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204803.1.S1_at	A	A1TS	POPTR_0009s07630	POPTR_0009s07630 (11)	scaffold_9:7090422-7091632(-) (11)	NA	NA	NA	AT3G14190.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12360.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204805.1.S1_at	A	A1MS	POPTR_0009s07550	POPTR_0009s07550 (11)	scaffold_9:7038992-7039444(-) (11)	NA	Q9LFC5	Pentatricopeptide repeat-containing protein At5g01110	AT5G01110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06910.1	PPR repeat containing protein	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204806.1.S1_at	A	A1TS	POPTR_0009s07540	POPTR_0009s07540 (11)	scaffold_9:7028501-7029051(-) (11)	NA	NA	NA	AT5G12340.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g31970.1	expressed protein	Medtr5g096870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204807.1.S1_at	A	A1TS	POPTR_0009s07520	POPTR_0009s07520 (11)	scaffold_9:7021489-7021791(-) (11)	NA	Q38859	DNA-directed RNA polymerase II subunit RPB11	AT3G52090.1	"DNA-directed RNA polymerase, RBP11-like "	LOC_Os07g07610.1	"RNA polymerase subunit, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.204809.1.S1_at	A	A1TS	POPTR_0009s07460	POPTR_0009s07460 (11)	scaffold_9:6957378-6957923(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT5G49700.1	Predicted AT-hook DNA-binding family protein 	LOC_Os01g72450.1	"DNA binding protein, putative, expressed"	Medtr3g149230.1	Predicted AT-hook DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204810.1.S1_at	A	A1TS	POPTR_0009s07440	POPTR_0009s07440 (11)	scaffold_9:6938178-6938605(-) (11)	NA	Q3E9B8	ABC transporter G family member 23	AT5G19410.1	ABC-2 type transporter family protein 	LOC_Os01g42900.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr8g122660.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.204811.1.S1_at	A	A1TS	POPTR_0009s07430	POPTR_0009s07430 (11)	scaffold_9:6929652-6931162(-) (11)	NA	NA	NA	AT5G13500.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g32060.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204811.1.S1_x_at	A	A1TS	POPTR_0009s07430	POPTR_0009s07430 (11)	scaffold_9:6929652-6931693(-) (11)	NA	NA	NA	AT5G13500.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g32060.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204812.1.S1_at	A	A1TS	POPTR_0009s07390	POPTR_0009s07390 (11)	scaffold_9:6915671-6916204(+) (11)	NA	Q54FG5	Rho GTPase-activating protein gacJJ	AT5G19390.2	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g096580.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.204814.1.S1_at	A	A1TS	POPTR_0009s07280	POPTR_0009s07280 (9)	scaffold_9:6839907-6839963(+) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os12g04020.1	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.1	Hydroxymethylglutaryl-coenzyme A lyase active site 	NA	GO:0003824|catalytic activity	NA
PtpAffx.204814.1.S1_x_at	A	A1TS	POPTR_0009s07280	POPTR_0009s07280 (9)	scaffold_9:6839501-6839963(+) (10)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os12g04020.1	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.1	Hydroxymethylglutaryl-coenzyme A lyase active site 	NA	GO:0003824|catalytic activity	NA
PtpAffx.204815.1.S1_at	A	A1TS	POPTR_0009s07250	POPTR_0009s07250 (10)	scaffold_9:6823864-6825172(+) (11)	NA	NA	NA	AT2G26840.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43910.1); Has 835 Blast hits to 835 proteins in 26 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 2; Other Eukaryotes - 768 (source: NCBI BLink). 	LOC_Os01g16340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204816.1.S1_at	A	A1TS	POPTR_0009s07240	POPTR_0009s07240 (11)	scaffold_9:6820104-6820650(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g096180.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204818.1.S1_at	A	A1MS	POPTR_0009s07190	POPTR_0009s07190 (11)	scaffold_9:6775395-6775620(+) (11)	NA	NA	NA	AT5G19473.1	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os10g26540.1	expressed protein	Medtr5g096390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204819.1.S1_at	A	A1TS	POPTR_0009s07170	POPTR_0009s07170 (11)	scaffold_9:6768471-6769038(-) (11)	NA	Q5BIV3	Pentatricopeptide repeat-containing protein At1g11900	AT1G11900.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g40320.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g007140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204820.1.S1_at	A	A1TS	POPTR_0009s07140	POPTR_0009s07140 (11)	scaffold_9:6747069-6747571(-) (11)	NA	Q9SN39	"Pentatricopeptide repeat-containing protein At4g18750, chloroplastic"	AT4G18750.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g15460.1	"pentatricopeptide, putative, expressed"	Medtr4g157180.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204820.1.S1_s_at	A	A1TS	POPTR_0009s07140	POPTR_0009s07140 (11)	scaffold_9:6746982-6747344(-) (11)	NA	Q9SN39	"Pentatricopeptide repeat-containing protein At4g18750, chloroplastic"	AT4G18750.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g15460.1	"pentatricopeptide, putative, expressed"	Medtr4g157180.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204821.1.S1_at	A	A1TS	POPTR_0009s07130	POPTR_0009s07130 (11)	scaffold_9:6746183-6746545(+) (11)	NA	NA	NA	AT5G12260.1	BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g18060.1	"sugar transporter superfamily, putative, expressed"	Medtr8g026520.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204822.1.S1_at	A	A1TS	POPTR_0009s07110	POPTR_0009s07110 (11)	scaffold_9:6732629-6733494(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204823.1.S1_at	A	A1TS	POPTR_0009s07100	POPTR_0009s07100 (11)	scaffold_9:6729739-6730755(+) (11)	NA	O48790	Cyclin-B1-4	AT2G26760.1	Cyclin B1;4 	LOC_Os01g59120.1	"cyclin, putative, expressed"	Medtr5g096040.1	"Cyclin, N-terminal "	NA	NA	GO:0005634|nucleus
PtpAffx.204824.1.S1_at	A	A1TS	POPTR_0009s07000	POPTR_0009s07000 (11)	scaffold_9:6665760-6666348(+) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT5G48060.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os06g41090.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr4g024650.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204825.1.S1_at	A	A1TS	POPTR_0009s06980	POPTR_0009s06980 (11)	scaffold_9:6642317-6643060(+) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT3G52140.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g48620.2	"tetratricopeptide repeat, putative, expressed"	Medtr3g030760.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204825.1.S1_s_at	A	A1TS	POPTR_0009s06980	POPTR_0009s06980 (11)	scaffold_9:6643005-6643241(+) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT3G52140.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g48620.2	"tetratricopeptide repeat, putative, expressed"	Medtr3g030760.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204825.1.S1_x_at	A	A1TS	POPTR_0009s06980	POPTR_0009s06980 (11)	scaffold_9:6642317-6643108(+) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT3G52140.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g48620.2	"tetratricopeptide repeat, putative, expressed"	Medtr3g030760.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204826.1.S1_at	A	A1TS	POPTR_0009s06970	POPTR_0009s06970 (11)	scaffold_9:6625337-6625788(-) (11)	NA	Q9FI39	Cytochrome P450 705A5	AT5G42580.1	"cytochrome P450, family 705, subfamily A, polypeptide 12 "	LOC_Os04g01140.1	"cytochrome P450 93A2, putative, expressed"	Medtr7g111280.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204828.1.S1_at	A	A1TS	POPTR_0009s06930	POPTR_0009s06930 (11)	scaffold_9:6596743-6597577(-) (11)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.204829.1.S1_at	A	A1TS	POPTR_0009s06900	POPTR_0009s06900 (9)	scaffold_9:6570344-6570559(+) (9)	NA	Q94C11	Splicing factor 4-like protein	AT3G52120.1	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein 	LOC_Os09g10930.2	"gamma response I protein, putative, expressed"	Medtr8g037400.1	SWAP/Surp; D111/G-patch 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.204831.1.S1_at	A	A1TS	POPTR_0009s06870	POPTR_0009s06870 (11)	scaffold_9:6550743-6551238(+) (11)	NA	Q9ZRT1	Protein gamma response 1	AT3G52115.1	gamma response gene 1 	LOC_Os06g41050.1	expressed protein	Medtr8g037320.1	"Protein gamma response 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204832.1.S1_at	A	A1TS	POPTR_0009s06830	POPTR_0009s06830 (11)	scaffold_9:6518419-6519696(-) (11)	NA	A6NDY0	Embryonic polyadenylate-binding protein 2	AT3G12640.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g39629.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g030300.1	"Short-chain dehydrogenase/reductase SDR; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.204833.1.S1_at	A	A1TS	POPTR_0009s06800	POPTR_0009s06800 (11)	scaffold_9:6505292-6505880(-) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT1G03940.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g57480.1	"transferase family protein, putative, expressed"	Medtr3g030230.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.204834.1.S1_at	A	A1MS	POPTR_0009s06710	POPTR_0009s06710 (11)	scaffold_9:6440201-6440714(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204835.1.S1_s_at	A	A1TS	POPTR_0009s06670	POPTR_0009s06670 (11)	scaffold_9:6403536-6404282(-) (11)	NA	NA	NA	AT3G52110.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages. 	LOC_Os03g07810.1	expressed protein	Medtr7g110930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204836.1.S1_at	A	A1TS	POPTR_0009s06650	POPTR_0009s06650 (11)	scaffold_9:6386238-6389221(-) (11)	NA	Q9SZ30	"Imidazole glycerol phosphate synthase hisHF, chloroplastic"	AT4G26900.1	HIS HF 	LOC_Os03g15120.1	"imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.204837.1.S1_at	A	A1TS	POPTR_0009s06630	POPTR_0009s06630 (11)	scaffold_9:6369834-6371126(-) (11)	NA	Q9LXV2	Transcription factor MYB46	AT3G08500.1	myb domain protein 83 	LOC_Os12g33070.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g117450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204837.1.S1_x_at	A	A1TS	POPTR_0009s06630	POPTR_0009s06630 (11)	scaffold_9:6369834-6371126(-) (11)	NA	Q9LXV2	Transcription factor MYB46	AT3G08500.1	myb domain protein 83 	LOC_Os12g33070.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g117450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204838.1.S1_at	A	A1TS	POPTR_0009s06600	POPTR_0009s06600 (11)	scaffold_9:6347988-6348107(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204839.1.S1_at	A	A1TS	POPTR_0009s06590	POPTR_0009s06590 (11)	scaffold_9:6339708-6340821(-) (11)	NA	P76352	Uncharacterized transporter yeeO	AT3G08040.2	MATE efflux family protein 	LOC_Os03g11734.2	"MATE efflux protein, putative, expressed"	Medtr3g028600.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.204840.1.S1_at	A	A1TS	POPTR_0009s06580	POPTR_0009s06580 (11)	scaffold_9:6335474-6335886(+) (11)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.3	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204840.1.S1_s_at	A	A1TS	POPTR_0009s06580	POPTR_0009s06580 (11)	scaffold_9:6335555-6336051(+) (11)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.3	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204841.1.S1_s_at	A	A1TA	POPTR_0009s06570	POPTR_0009s06570 (11)	scaffold_9:6323880-6324128(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204842.1.S1_x_at	A	A1TS	POPTR_0009s06550	POPTR_0009s06550 (9)	scaffold_9:6309972-6311232(-) (10)	NA	NA	NA	AT4G15030.1	CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits to 5700 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses - 76; Other Eukaryotes - 2900 (source: NCBI BLink). 	LOC_Os11g42000.1	"FRA10AC1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204843.1.S1_at	A	A1TS	POPTR_0009s06530	POPTR_0009s06530 (10)	scaffold_9:6290884-6292844(+) (10)	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204844.1.S1_at	A	A1TS	POPTR_0009s06520	POPTR_0009s06520 (11)	scaffold_9:6272448-6274182(-) (11)	NA	P35336	Polygalacturonase	AT3G07970.1	Pectin lyase-like superfamily protein 	LOC_Os07g10680.1	"polygalacturonase, putative"	Medtr2g071100.1	"Pectolytic enzyme, Pectin lyase fold "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.204845.1.S1_at	A	A1TS	POPTR_0009s06490	POPTR_0009s06490 (10)	scaffold_9:6256102-6256690(+) (10)	NA	NA	NA	AT5G47940.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os07g38160.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204846.1.S1_at	A	A1TS	POPTR_0009s06430	POPTR_0009s06430 (11)	scaffold_9:6209518-6209948(+) (11)	NA	Q8L709	Cation/H(+) antiporter 28	AT3G52080.1	cation/hydrogen exchanger 28 	LOC_Os12g44300.1	"CHX28, putative, expressed"	Medtr3g029990.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.204847.1.S1_at	A	A1TS	POPTR_0009s06390	POPTR_0009s06390 (11)	scaffold_9:6184063-6185373(-) (11)	NA	Q84TI3	Protein OBERON 4	AT3G63500.2	Protein of unknown function (DUF1423) 	LOC_Os03g11890.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr4g049790.1	Arabidopsis thaliana 130.7kDa hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204848.1.S1_at	A	A1TS	POPTR_0009s06370	POPTR_0009s06370 (10)	scaffold_9:6168732-6169272(-) (10)	NA	NA	NA	AT3G08030.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049780.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204849.1.S1_at	A	A1TS	POPTR_0009s06340	POPTR_0009s06340 (11)	scaffold_9:6141421-6141800(-) (11)	NA	Q9SCP4	Pentatricopeptide repeat-containing protein At3g53170	AT3G53170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g02430.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g039890.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204850.1.S1_at	A	A1TS	POPTR_0009s06310	POPTR_0009s06310 (10)	scaffold_9:6095859-6097810(-) (10)	NA	Q9FLX9	Notchless protein homolog	AT5G52820.1	"WD-40 repeat family protein / notchless protein, putative "	LOC_Os11g38170.2	"notchless protein, putative, expressed"	Medtr8g138930.1	"Protein will die slowly, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204851.1.S1_at	A	A1TS	POPTR_0009s06300	POPTR_0009s06300 (11)	scaffold_9:6093092-6093672(+) (11)	NA	Q941F1	"Phospholipase A1-Igamma1, chloroplastic"	AT1G30370.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g32380.1	"phospholipase, putative, expressed"	Medtr4g104700.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.204852.1.S1_at	A	A1TS	POPTR_0009s06280	POPTR_0009s06280 (11)	scaffold_9:6081955-6083866(+) (11)	NA	P51105	Dihydroflavonol-4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.2	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204853.1.S1_at	A	A1TS	POPTR_0009s06250	POPTR_0009s06250 (10)	scaffold_9:6064417-6066811(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204855.1.S1_at	A	A1TS	POPTR_0009s06210	POPTR_0009s06210 (11)	scaffold_9:6054339-6056226(+) (11)	NA	P26683	RNA polymerase sigma factor rpoD	AT5G13730.1	sigma factor 4 	LOC_Os03g16430.1	"RNA polymerase sigma factor, putative, expressed"	Medtr3g040130.3	Sigma-70 region 2 	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.204856.1.S1_at	A	A1TS	POPTR_0009s06190	POPTR_0009s06190 (11)	scaffold_9:6044716-6045603(-) (11)	NA	NA	NA	AT5G12470.1	Protein of unknown function (DUF3411) 	LOC_Os05g32230.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204857.1.S1_at	A	A1TS	POPTR_0009s06130	POPTR_0009s06130 (11)	scaffold_9:6012286-6012798(-) (11)	NA	NA	NA	AT5G28040.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os07g44200.1	"transcription regulator, putative, expressed"	Medtr1g096530.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204857.1.S1_x_at	A	A1TS	POPTR_0009s06130	POPTR_0009s06130 (11)	scaffold_9:6012286-6012798(-) (11)	NA	NA	NA	AT5G28040.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os07g44200.1	"transcription regulator, putative, expressed"	Medtr1g096530.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204858.1.S1_at	A	A1TS	POPTR_0009s06110	POPTR_0009s06110 (11)	scaffold_9:6004074-6004587(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g041120.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.204859.1.S1_at	A	A1TS	POPTR_0009s06090	POPTR_0009s06090 (11)	scaffold_9:5997041-5998196(+) (11)	NA	Q0WRX3	Serine carboxypeptidase-like 40	AT3G63470.1	serine carboxypeptidase-like 40 	LOC_Os07g46350.1	"OsSCP40 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr3g040960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.204860.1.S1_at	A	A1TS	POPTR_0009s06060	POPTR_0009s06060 (10)	scaffold_9:5973961-5977110(+) (10)	NA	Q38847	Agamous-like MADS-box protein AGL15	AT5G13790.1	AGAMOUS-like 15 	LOC_Os02g36924.1	"OsMADS27 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.204861.1.S1_at	A	A1TS	POPTR_0009s06040	POPTR_0009s06040 (11)	scaffold_9:5959827-5961507(-) (11)	NA	NA	NA	AT2G28420.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os07g46360.1	"glyoxalase family protein, putative, expressed"	Medtr5g021550.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204862.1.S1_at	A	A2TS	POPTR_0009s06010	POPTR_0009s06020 (11)//POPTR_0009s06010 (11)	scaffold_9:5941856-5942298(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204863.1.S1_at	A	A1TS	POPTR_0009s06000	POPTR_0009s06000 (11)	scaffold_9:5937224-5937753(+) (11)	NA	Q9SV05	Serine/threonine-protein kinase-like protein At3g51990	AT3G51990.1	Protein kinase superfamily protein 	LOC_Os05g32170.1	"TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr3g148970.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204864.1.S1_at	A	A1TS	POPTR_0009s05990	POPTR_0009s05990 (11)	scaffold_9:5926589-5927136(+) (11)	NA	Q9SV07	Acyl-CoA--sterol O-acyltransferase 1	AT3G51970.1	acyl-CoA sterol acyl transferase 1 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr3g076460.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204865.1.S1_at	A	A1TS	POPTR_0009s05980	POPTR_0009s05980 (11)	scaffold_9:5922547-5923107(-) (11)	NA	Q9SV07	Acyl-CoA--sterol O-acyltransferase 1	AT3G51970.1	acyl-CoA sterol acyl transferase 1 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr2g029750.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204866.1.S1_at	A	A1TS	POPTR_0009s05970	POPTR_0009s05970 (9)	scaffold_9:5918301-5918870(-) (11)	NA	Q9SV07	Acyl-CoA--sterol O-acyltransferase 1	AT3G51970.1	acyl-CoA sterol acyl transferase 1 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr3g076460.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204867.1.S1_at	A	A1TS	POPTR_0009s05900	POPTR_0009s05900 (11)	scaffold_9:5856482-5857731(+) (11)	NA	Q8YZH7	GTPase Der	AT3G12080.1	GTP-binding family protein 	LOC_Os11g41910.1	"GTP-binding protein, putative, expressed"	CU651589_6.1	"GTP-binding protein, HSR1-related CU651589.4 33538-37140 E EGN_Mt090430 200"	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.204868.1.S1_at	A	A1TS	POPTR_0009s05900	POPTR_0009s05900 (11)	scaffold_9:5852315-5852443(+) (11)	NA	Q8YZH7	GTPase Der	AT3G12080.1	GTP-binding family protein 	LOC_Os11g41910.1	"GTP-binding protein, putative, expressed"	CU651589_6.1	"GTP-binding protein, HSR1-related CU651589.4 33538-37140 E EGN_Mt090430 200"	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.204869.1.S1_at	A	A1TS	POPTR_0009s05890	POPTR_0009s05890 (11)	scaffold_9:5846021-5846516(+) (11)	NA	NA	NA	AT1G51310.1	transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases 	LOC_Os03g07850.1	"tRNA methyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204870.1.S1_at	A	A1TS	POPTR_0009s05870	POPTR_0009s05870 (11)	scaffold_9:5838246-5838297(-) (11)	NA	Q9C6I8	Probable nucleolar GTP-binding protein 1	AT1G50920.1	Nucleolar GTP-binding protein 	LOC_Os07g01920.1	"nucleolar GTP-binding protein 1, putative, expressed"	Medtr8g021130.1	"Nucleolar GTP-binding 1; NOG, C-terminal "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.204871.1.S1_x_at	A	A1TS	POPTR_0009s05860	POPTR_0009s05860 (11)	scaffold_9:5831540-5833120(-) (11)	POPTR_0001s26590 (7)	Q9LXV2	Transcription factor MYB46	AT5G12870.1	myb domain protein 46 	LOC_Os05g04820.1	"MYB family transcription factor, putative, expressed"	Medtr2g117450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204872.1.S1_at	A	A1TS	POPTR_0009s05830	POPTR_0009s05830 (11)	scaffold_9:5814327-5815478(-) (11)	NA	Q58119	Uncharacterized transporter MJ0709	AT1G51340.2	MATE efflux family protein 	LOC_Os03g11734.2	"MATE efflux protein, putative, expressed"	Medtr2g117440.1	Ribosomal protein S2; Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.204873.1.S1_at	A	A1TS	POPTR_0009s05820	POPTR_0009s05820 (10)	scaffold_9:5812724-5813704(-) (10)	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os08g25280.1	"pentatricopeptide, putative, expressed"	Medtr3g162760.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204874.1.S1_at	A	A1TS	POPTR_0009s05810	POPTR_0009s05810 (11)	scaffold_9:5806853-5807409(+) (11)	NA	Q9LXV4	Zinc finger CCCH domain-containing protein 56	AT5G12850.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.1	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204875.1.S1_s_at	A	A1TS	POPTR_0009s05790	POPTR_0009s05790 (11)	scaffold_9:5794228-5796371(+) (11)	NA	NA	NA	AT5G19855.1	Chaperonin-like RbcX protein 	LOC_Os03g59320.1	expressed protein	Medtr3g080800.2	Chaperonin-like RbcX 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204876.1.S1_at	A	A1TS	POPTR_0009s05740	POPTR_0009s05740 (10)	scaffold_9:5753099-5754271(-) (10)	NA	Q38873	Calcium-dependent protein kinase 7	AT5G12480.1	calmodulin-domain protein kinase 7 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204876.1.S1_s_at	A	A1TS	POPTR_0009s05740	POPTR_0009s05740 (11)	scaffold_9:5753279-5753520(-) (11)	NA	Q38873	Calcium-dependent protein kinase 7	AT5G12480.1	calmodulin-domain protein kinase 7 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204877.1.S1_at	A	A1TS	POPTR_0009s05710	POPTR_0009s05710 (11)	scaffold_9:5740510-5740688(-) (11)	NA	NA	NA	AT1G51405.1	myosin-related 	LOC_Os03g11770.1	expressed protein	Medtr4g104600.1	"Gonadotropin, beta chain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204877.1.S1_s_at	A	A1TS	POPTR_0009s05710	POPTR_0009s05710 (11)	scaffold_9:5739631-5739955(-) (11)	NA	NA	NA	AT1G51405.1	myosin-related 	LOC_Os03g11770.1	expressed protein	Medtr4g104600.1	"Gonadotropin, beta chain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204878.1.S1_at	A	A1TS	POPTR_0009s05700	POPTR_0009s05700 (11)	scaffold_9:5737263-5737881(+) (11)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204879.1.S1_at	A	A1TS	POPTR_0009s05690	POPTR_0009s05690 (11)	scaffold_9:5733955-5734523(+) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os05g34830.1	"No apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204880.1.S1_at	A	A1TS	POPTR_0009s05660	POPTR_0009s05660 (11)	scaffold_9:5718239-5718772(-) (11)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT1G51440.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g32380.1	"phospholipase, putative, expressed"	Medtr4g104700.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.204881.1.S1_at	A	A1TS	POPTR_0009s05640	POPTR_0009s05640 (11)	scaffold_9:5694747-5695743(+) (11)	NA	NA	NA	AT5G12460.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr2g113940.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204882.1.S1_at	A	A1TS	POPTR_0009s05630	POPTR_0009s05630 (11)	scaffold_9:5691832-5692282(+) (11)	NA	NA	NA	AT5G12460.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr4g079780.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204883.1.S1_at	A	A1TA	POPTR_0009s05620	POPTR_0009s05620 (11)	scaffold_9:5687664-5687854(-) (11)	NA	Q56YN3	NAD(H) kinase 1	AT3G21070.2	NAD kinase 1 	LOC_Os01g72690.1	"NAD kinase, putative, expressed"	Medtr4g104490.1	ATP-NAD/AcoX kinase 	GO:0008152|metabolic process	GO:0003951|NAD+ kinase activity	NA
PtpAffx.204884.1.S1_at	A	A1TS	POPTR_0009s05600	POPTR_0009s05600 (11)	scaffold_9:5664938-5665026(-) (11)	NA	Q91X20	Set1/Ash2 histone methyltransferase complex subunit ASH2	AT1G51450.1	TRAUCO 	LOC_Os12g04930.1	"ASH-like SPRY domain containing protein, putative, expressed"	Medtr4g104590.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204884.1.S1_x_at	A	A1TS	POPTR_0009s05600	POPTR_0009s05600 (11)	scaffold_9:5664938-5668618(-) (11)	NA	Q91X20	Set1/Ash2 histone methyltransferase complex subunit ASH2	AT1G51450.1	TRAUCO 	LOC_Os12g04930.1	"ASH-like SPRY domain containing protein, putative, expressed"	Medtr4g104590.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204885.1.S1_at	A	A1TS	POPTR_0009s05580	POPTR_0009s05580 (11)	scaffold_9:5662289-5663046(+) (11)	NA	Q8RWI9	ABC transporter G family member 15	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os05g13520.1	"white-brown complex homolog protein 12, putative, expressed"	Medtr4g104580.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.204886.1.S1_at	A	A1TS	POPTR_0009s05570	POPTR_0009s05570 (11)	scaffold_9:5650268-5651192(+) (11)	NA	Q8RWI9	ABC transporter G family member 15	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os05g13520.1	"white-brown complex homolog protein 12, putative, expressed"	Medtr4g104580.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.204887.1.S1_at	A	A1TS	POPTR_0009s05560	POPTR_0009s05560 (11)	scaffold_9:5633086-5633559(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g16880.1	expressed protein	Medtr4g104360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204888.1.S1_at	A	A1TS	POPTR_0009s05530	POPTR_0009s05530 (10)	scaffold_9:5620751-5623529(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204890.1.S1_at	A	A1TS	POPTR_0009s05510	POPTR_0009s05510 (11)	scaffold_9:5600379-5601321(-) (11)	NA	Q94CJ8	Zinc finger CCCH domain-containing protein 55	AT5G12440.3	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os03g21140.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr5g008940.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204891.1.S1_at	A	A1MS	POPTR_0009s05490	POPTR_0009s05490 (10)	scaffold_9:5590930-5591466(+) (10)	NA	P52407	"Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform"	AT4G16260.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g71930.1	"glycosyl hydrolases family 17 protein, expressed"	Medtr4g104090.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204892.1.S1_at	A	A2TS	POPTR_0009s05480	POPTR_0009s05480 (11)//POPTR_0019s10320 (10)	scaffold_19:11912277-11913322(+) (10)//scaffold_9:5581301-5582747(-) (11)	NA	Q99615	DnaJ homolog subfamily C member 7	AT5G12430.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.204893.1.S1_at	A	A1TS	POPTR_0009s05480	POPTR_0009s05480 (11)	scaffold_9:5580297-5580452(-) (11)	NA	Q99615	DnaJ homolog subfamily C member 7	AT5G12430.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.204893.1.S1_x_at	A	A1TS	POPTR_0009s05480	POPTR_0009s05480 (11)	scaffold_9:5577379-5580452(-) (11)	NA	Q99615	DnaJ homolog subfamily C member 7	AT5G12430.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.204894.1.S1_at	A	A1TS	POPTR_0009s05460	POPTR_0009s05460 (11)	scaffold_9:5545182-5545971(-) (11)	NA	Q9LPS1	Hexokinase-3	AT1G50460.1	hexokinase-like 1 	LOC_Os01g71320.1	"hexokinase, putative, expressed"	Medtr5g009020.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.204895.1.S1_at	A	A1TS	POPTR_0009s05390	POPTR_0009s05390 (11)	scaffold_9:5501315-5501742(+) (11)	NA	NA	NA	AT4G33550.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g58660.1	"LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g103720.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204896.1.S1_at	A	A1TS	POPTR_0009s05360	POPTR_0009s05360 (11)	scaffold_9:5470510-5470756(-) (11)	NA	NA	NA	AT4G30880.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g58660.1	"LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g103720.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204897.1.S1_at	A	A1TS	POPTR_0009s05350	POPTR_0009s05350 (11)	scaffold_9:5466184-5466511(-) (11)	NA	NA	NA	AT4G33550.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g58660.1	"LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g103720.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204898.1.S1_at	A	A1TS	POPTR_0009s05340	POPTR_0009s05340 (10)	scaffold_9:5463656-5463884(-) (11)	NA	NA	NA	AT4G33550.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	Medtr4g103720.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204899.1.S1_at	A	A1TS	POPTR_0009s05330	POPTR_0009s05330 (10)	scaffold_9:5460005-5460427(+) (10)	NA	Q9LPR8	Scarecrow-like protein 3	AT1G50420.1	scarecrow-like 3 	LOC_Os01g71970.1	"GRAS family transcription factor containing protein, expressed"	Medtr5g009100.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204900.1.S1_at	A	A1MS	POPTR_0009s05320	POPTR_0009s05320 (10)	scaffold_9:5450748-5451061(+) (10)	NA	Q8NYD0	Pseudouridine-5'-phosphate glycosidase	AT1G50510.1	indigoidine synthase A family protein 	LOC_Os08g39420.2	"uncharacterized protein yeiN, putative, expressed"	Medtr4g032300.1	Indigoidine synthase A like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204902.1.S1_at	A	A1TS	POPTR_0009s05220	POPTR_0009s05220 (11)	scaffold_9:5361965-5364231(-) (11)	NA	O74918	Exosome complex component rrp45	AT3G60500.3	3'-5'-exoribonuclease family protein 	LOC_Os02g34570.2	"exosome complex exonuclease, putative, expressed"	Medtr2g024450.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.204903.1.S1_at	A	A1TS	POPTR_0009s05210	POPTR_0009s05210 (11)	scaffold_9:5352855-5355784(-) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT1G34470.1	Protein of unknown function (DUF803) 	LOC_Os05g43790.1	"DUF803 domain containing, putative, expressed"	Medtr5g097050.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.204904.1.S1_at	A	A1TS	POPTR_0009s05140	POPTR_0009s05140 (11)	scaffold_9:5298373-5298972(+) (11)	NA	Q06716	ATP-dependent Clp protease ATP-binding subunit ClpL	AT1G07200.2	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204906.1.S1_at	A	A1TS	POPTR_0009s05130	POPTR_0009s05130 (11)	scaffold_9:5272274-5274199(+) (11)	NA	Q39032	Phosphoinositide phospholipase C 1	AT5G58670.1	phospholipase C1 	LOC_Os12g37560.1	"phospholipase C, putative, expressed"	Medtr3g093840.1	C2; EF-Hand type; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.204907.1.S1_at	A	A1TS	POPTR_0009s05110	POPTR_0009s05110 (11)	scaffold_9:5262995-5263246(+) (11)	NA	NA	NA	AT2G29950.1	ELF4-like 1 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr3g093640.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204908.1.S1_at	A	A1TS	POPTR_0009s05090	POPTR_0009s05090 (11)	scaffold_9:5254021-5256548(+) (11)	NA	NA	NA	AT5G58720.1	smr (Small MutS Related) domain-containing protein 	LOC_Os01g12530.1	"smr domain containing protein, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204911.1.S1_at	A	A1TS	POPTR_0009s05050	POPTR_0009s05050 (11)	scaffold_9:5234514-5234838(-) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os09g02830.1	OsMADS78 - MADS-box family gene with M-alpha type-box	Medtr5g048190.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.204912.1.S1_at	A	A1TS	POPTR_0009s05030	POPTR_0009s05030 (11)	scaffold_9:5220154-5220673(-) (11)	NA	O74913	Uncharacterized protein C757.02c	AT5G58750.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204913.1.S1_at	A	A1MS	POPTR_0009s05020	POPTR_0009s05020 (10)	scaffold_9:5218119-5219297(+) (10)	NA	Q7PC88	ABC transporter G family member 31	AT2G29940.1	pleiotropic drug resistance 3 	LOC_Os10g13830.1	"pleiotropic drug resistance protein 13, putative, expressed"	Medtr5g078790.1	AAA ATPase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204914.1.S1_at	A	A1TS	POPTR_0009s04940	POPTR_0009s04940 (9)	scaffold_9:5165985-5166602(+) (9)	NA	NA	NA	AT5G01260.2	Carbohydrate-binding-like fold 	LOC_Os05g37450.1	"starch binding domain containing protein, putative, expressed"	Medtr4g012900.1	"Glycoside hydrolase, starch-binding; "	GO:0005975|carbohydrate metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.204915.1.S1_at	A	A1TS	POPTR_0009s04910	POPTR_0009s04910 (11)	scaffold_9:5153834-5154396(+) (11)	NA	Q9ST43	Pleckstrin homology domain-containing protein 1	AT2G29700.1	pleckstrin homologue 1 	LOC_Os01g63800.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g089860.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204917.1.S1_at	A	A1TS	POPTR_0009s04870	POPTR_0009s04870 (11)	scaffold_9:5097758-5099275(-) (11)	NA	Q9S7L2	Transcription factor MYB98	AT5G58850.1	myb domain protein 119 	LOC_Os06g06740.1	"MYB family transcription factor, putative, expressed"	Medtr5g078470.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204917.1.S1_x_at	A	A1TS	POPTR_0009s04870	POPTR_0009s04870 (11)	scaffold_9:5097758-5099275(-) (11)	NA	Q9S7L2	Transcription factor MYB98	AT5G58850.1	myb domain protein 119 	LOC_Os06g06740.1	"MYB family transcription factor, putative, expressed"	Medtr5g078470.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204918.1.S1_at	A	A1TS	POPTR_0009s04860	POPTR_0009s04860 (11)	scaffold_9:5093737-5094999(+) (11)	NA	Q941R4	GDP-mannose transporter	AT1G07290.1	golgi nucleotide sugar transporter 2 	LOC_Os03g61100.1	"GDP-mannose transporter, putative"	Medtr3g143330.1	"GDP-mannose transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204919.1.S1_at	A	A1TS	POPTR_0009s04810	POPTR_0009s04810 (11)	scaffold_9:5062356-5063336(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204920.1.S1_at	A	A1TS	POPTR_0009s04800	POPTR_0009s04800 (11)	scaffold_9:5059750-5060328(+) (11)	NA	O82391	Josephin-like protein	AT2G29640.1	JOSEPHIN-like protein 	LOC_Os03g15850.1	"josephin, putative, expressed"	Medtr5g078350.1	Machado-Joseph disease protein MJD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204922.1.S1_at	A	A1TS	POPTR_0009s04740	POPTR_0009s04740 (11)	scaffold_9:5012722-5013768(-) (11)	NA	Q56078	Periplasmic beta-glucosidase	AT3G47000.1	Glycosyl hydrolase family protein 	LOC_Os05g37700.1	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr5g078320.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204923.1.S1_at	A	A1TS	POPTR_0009s04710	POPTR_0009s04710 (11)	scaffold_9:4978026-4978235(-) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.204923.1.S1_x_at	A	A1TS	POPTR_0009s04710	POPTR_0009s04710 (11)	scaffold_9:4977681-4978235(-) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.204924.1.S1_at	A	A1TS	POPTR_0009s04690	POPTR_0009s04690 (10)	scaffold_9:4967005-4967161(+) (11)	NA	Q9SS80	"UPF0503 protein At3g09070, chloroplastic"	AT5G58930.1	Protein of unknown function (DUF740) 	LOC_Os05g37800.1	"DUF740 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204925.1.S1_at	A	A1MS	POPTR_0009s04670	POPTR_0009s04670 (10)	scaffold_9:4952934-4954252(-) (10)	NA	Q8W0H5	"Probable anion transporter 3, chloroplastic"	AT3G46980.3	phosphate transporter 4;3 	LOC_Os01g63290.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204926.1.S1_at	A	A1TS	POPTR_0009s04640	POPTR_0009s04640 (11)	scaffold_9:4936001-4936610(+) (11)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT1G07350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g15890.2	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.204927.1.S1_at	A	A1TS	POPTR_0009s04620	POPTR_0009s04620 (11)	scaffold_9:4928543-4928857(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204928.1.S1_s_at	A	A1TS	POPTR_0009s04600	POPTR_0009s04600 (11)	scaffold_9:4920730-4920854(+) (11)	NA	Q5SNN4	Zinc finger CCCH domain-containing protein 40	AT2G29580.1	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os06g07350.1	"RNA-binding motif protein, putative, expressed"	Medtr3g111410.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.204929.1.S1_at	A	A1TS	POPTR_0009s04600	POPTR_0009s04600 (11)	scaffold_9:4920374-4920669(+) (11)	NA	Q5SNN4	Zinc finger CCCH domain-containing protein 40	AT2G29580.1	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os06g07350.1	"RNA-binding motif protein, putative, expressed"	Medtr3g111410.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.204930.1.S1_at	A	A1TS	POPTR_0009s04530	POPTR_0009s04530 (11)	scaffold_9:4864718-4866050(+) (11)	NA	Q304B9	Neutral ceramidase	AT5G58980.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204931.1.S1_s_at	A	A4TS	POPTR_0009s04480	POPTR_0187s00200 (11)//POPTR_0009s04480 (11)//POPTR_0187s00220 (11)//POPTR_0187s00210 (10)	scaffold_187:30975-31487(+) (11)//scaffold_187:39582-40090(+) (11)//scaffold_187:36818-37326(-) (10)//scaffold_9:4833245-4833750(-) (11)	NA	NA	NA	AT5G52390.1	PAR1 protein 	NA	NA	Medtr4g015430.1	PAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204934.1.S1_at	A	A1TS	POPTR_0009s04430	POPTR_0009s04430 (11)	scaffold_9:4815243-4815978(+) (11)	NA	NA	NA	AT2G29525.3	Arabidopsis Inositol phosphorylceramide synthase 3 	LOC_Os05g21180.2	"phosphatidic acid phosphatase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204935.1.S1_at	A	A1TS	POPTR_0009s04400	POPTR_0009s04400 (10)	scaffold_9:4787843-4791946(+) (10)	NA	P46070	Transcription factor IIIB 70 kDa subunit	AT3G09360.1	Cyclin/Brf1-like TBP-binding protein 	LOC_Os05g23940.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g103530.1	Cyclin-like; Brf1-like TBP-binding; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045941|positive regulation of transcription||GO:0006413|translational initiation	GO:0008270|zinc ion binding||GO:0016563|transcription activator activity||GO:0005515|protein binding||GO:0003743|translation initiation factor activity	GO:0005634|nucleus
PtpAffx.204936.1.S1_at	A	A1TS	POPTR_0009s04390	POPTR_0009s04390 (11)	scaffold_9:4778973-4779533(+) (11)	NA	Q9FI99	Cytokinin-N-glucosyltransferase 1	AT5G59590.1	UDP-glucosyl transferase 76E2 	LOC_Os03g60960.1	"cytokinin-N-glucosyltransferase 1, putative, expressed"	Medtr3g092670.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204937.1.S1_at	A	A1TS	POPTR_0009s04380	POPTR_0009s04380 (11)	scaffold_9:4776156-4776618(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G46660.1	UDP-glucosyl transferase 76E12 	LOC_Os07g13770.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g092670.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204939.1.S1_at	A	A1TS	POPTR_0009s04360	POPTR_0009s04360 (11)	scaffold_9:4768470-4768753(-) (11)	NA	Q8GWP3	Copper transporter 6	AT2G26975.1	Ctr copper transporter family 	LOC_Os01g56420.1	"ctr copper transporter family protein, putative, expressed"	Medtr4g087380.1	Ctr copper transporter 	GO:0006825|copper ion transport	GO:0005375|copper ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.204940.1.S1_at	A	A1TS	POPTR_0009s04340	POPTR_0009s04340 (11)	scaffold_9:4753659-4754172(-) (11)	NA	NA	NA	AT5G05950.1	maternal effect embryo arrest 60 	LOC_Os07g13600.1	expressed protein	Medtr3g092580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204941.1.S1_at	A	A1TS	POPTR_0009s04330	POPTR_0009s04330 (11)	scaffold_9:4751313-4751855(-) (11)	NA	P26470	"Lipopolysaccharide 1,2-N-acetylglucosaminetransferase"	AT5G59070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g46430.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr8g081350.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.204942.1.S1_at	A	A1TS	POPTR_0009s04300	POPTR_0009s04300 (11)	scaffold_9:4740970-4741586(+) (11)	NA	Q39766	Polygalacturonase	AT1G78400.1	Pectin lyase-like superfamily protein 	LOC_Os08g23790.1	"polygalacturonase, putative, expressed"	Medtr1g108030.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.204943.1.S1_at	A	A1TS	POPTR_0009s04280	POPTR_0009s04280 (11)	scaffold_9:4732554-4733166(+) (11)	NA	Q39547	Cucumisin	AT5G59100.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr8g005510.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.204944.1.S1_at	A	A1TS	POPTR_0009s04240	POPTR_0009s04240 (11)	scaffold_9:4712343-4712689(-) (11)	NA	Q9STF3	"Pentatricopeptide repeat-containing protein At3g46790, chloroplastic"	AT3G46790.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g62910.1	"CRR2, putative, expressed"	Medtr7g015110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204945.1.S1_at	A	A1TS	POPTR_0009s04200	POPTR_0009s04200 (11)	scaffold_9:4688659-4689051(+) (11)	NA	NA	NA	AT2G29300.1	NAD(P)-binding Rossmann-fold superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204946.1.S1_at	A	A1TS	POPTR_0009s04190	POPTR_0009s04190 (11)	scaffold_9:4683894-4684489(-) (11)	NA	NA	NA	AT3G53820.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os04g50070.1	ZOS4-13 - C2H2 zinc finger protein	Medtr4g084500.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.204947.1.S1_at	A	A1TS	POPTR_0009s04160	POPTR_0009s04160 (11)	scaffold_9:4673186-4673607(+) (11)	NA	Q5ZMJ9	Serine/arginine repetitive matrix protein 1	AT2G29210.1	splicing factor PWI domain-containing protein 	LOC_Os03g16369.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g084280.1	Splicing factor PWI 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	NA
PtpAffx.204947.1.S1_x_at	A	A1TS	POPTR_0009s04160	POPTR_0009s04160 (11)	scaffold_9:4673186-4673607(+) (11)	NA	Q5ZMJ9	Serine/arginine repetitive matrix protein 1	AT2G29210.1	splicing factor PWI domain-containing protein 	LOC_Os03g16369.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g084280.1	Splicing factor PWI 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	NA
PtpAffx.204948.1.S1_at	A	A1TS	POPTR_0009s04160	POPTR_0009s04160 (11)	scaffold_9:4668313-4668957(+) (11)	NA	Q5ZMJ9	Serine/arginine repetitive matrix protein 1	AT2G29210.1	splicing factor PWI domain-containing protein 	LOC_Os03g16369.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g084280.1	Splicing factor PWI 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	NA
PtpAffx.204950.1.S1_at	A	A1TS	POPTR_0009s04130	POPTR_0009s04130 (11)	scaffold_9:4653913-4655566(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g117260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204951.1.S1_at	A	A1TS	POPTR_0009s04070	POPTR_0009s04070 (11)	scaffold_9:4610224-4610503(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g100300.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204952.1.S1_at	A	A1TS	POPTR_0009s04010	POPTR_0009s04010 (11)	scaffold_9:4579587-4580304(+) (11)	NA	NA	NA	AT3G46750.1	unknown protein; Has 2631 Blast hits to 1984 proteins in 271 species: Archae - 6; Bacteria - 163; Metazoa - 1232; Fungi - 253; Plants - 141; Viruses - 8; Other Eukaryotes - 828 (source: NCBI BLink). 	NA	NA	Medtr4g084410.1	"serine/threonine kinase-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204953.1.S1_at	A	A1TS	POPTR_0009s04000	POPTR_0009s04000 (11)	scaffold_9:4576149-4576493(+) (11)	NA	Q9SVP7	Pentatricopeptide repeat-containing protein At4g13650	AT4G13650.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g10400.1	"pentatricopeptide, putative, expressed"	Medtr7g015730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204954.1.S1_at	A	A1TS	POPTR_0009s03990	POPTR_0009s03990 (11)	scaffold_9:4565356-4565573(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT3G46640.2	Homeodomain-like superfamily protein 	LOC_Os01g74020.1	"MYB family transcription factor, putative, expressed"	Medtr4g084700.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204954.1.S1_x_at	A	A1TS	POPTR_0009s03990	POPTR_0009s03990 (11)	scaffold_9:4565080-4565680(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT3G46640.2	Homeodomain-like superfamily protein 	LOC_Os01g74020.1	"MYB family transcription factor, putative, expressed"	Medtr4g084700.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204955.1.S1_at	A	A2TS	POPTR_0009s03970	POPTR_0009s03970 (11)//POPTR_1357s00200 (10)	scaffold_1357:2080-2365(-) (10)//scaffold_9:4544905-4545307(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G46620.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204956.1.S1_at	A	A1TS	POPTR_0009s03950	POPTR_0009s03950 (11)	scaffold_9:4528777-4530250(-) (11)	NA	Q94DG6	Zinc transporter 1	AT5G59520.1	ZRT/IRT-like protein 2 	LOC_Os01g74110.1	"metal cation transporter, putative, expressed"	Medtr2g117090.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.204957.1.S1_at	A	A1TS	POPTR_0009s03930	POPTR_0009s03930 (10)	scaffold_9:4518026-4518368(-) (11)	NA	Q8WUQ7	Uncharacterized protein C19orf29	AT1G03910.2	"EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2). "	LOC_Os03g58590.1	expressed protein	Medtr1g073920.1	"Uncharacterized protein C19orf29 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204958.1.S1_at	A	A1TS	POPTR_0009s03900	POPTR_0009s03900 (11)	scaffold_9:4465269-4468716(-) (11)	NA	O81077	Abscisic acid 8'-hydroxylase 2	AT2G29090.2	"cytochrome P450, family 707, subfamily A, polypeptide 2 "	LOC_Os02g47470.1	"cytochrome P450, putative, expressed"	Medtr8g086730.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.204959.1.S1_at	A	A1TS	POPTR_0009s03890	POPTR_0009s03890 (11)	scaffold_9:4454908-4455221(+) (11)	NA	NA	NA	AT5G59500.1	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases 	NA	NA	Medtr8g047820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204959.1.S1_x_at	A	A1TS	POPTR_0009s03890	POPTR_0009s03890 (11)	scaffold_9:4454908-4455250(+) (11)	NA	NA	NA	AT5G59500.1	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases 	NA	NA	Medtr8g047820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204960.1.S1_at	A	A1TS	POPTR_0009s03870	POPTR_0009s03870 (11)	scaffold_9:4433247-4434047(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g16670.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.204961.1.S1_at	A	A1TS	POPTR_0009s03840	POPTR_0009s03840 (11)	scaffold_9:4422374-4423427(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204962.1.S1_at	A	A1TS	POPTR_0009s03830	POPTR_0009s03830 (11)	scaffold_9:4418784-4419296(+) (11)	NA	P0C883	Scarecrow-like protein 33	AT2G29060.1	GRAS family transcription factor 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr2g116970.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204963.1.S1_at	A	A1TS	POPTR_0009s03810	POPTR_0009s03810 (11)	scaffold_9:4407751-4408091(+) (11)	NA	Q9XE58	Scarecrow-like protein 14	AT1G07530.1	SCARECROW-like 14 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204966.1.S1_at	A	A1TS	POPTR_0009s03770	POPTR_0009s03770 (11)	scaffold_9:4366337-4366795(-) (11)	NA	Q8H038	Xyloglucan galactosyltransferase KATAMARI1 homolog	AT2G29040.1	Exostosin family protein 	LOC_Os03g05110.1	"xyloglucan galactosyltransferase KATAMARI1, putative, expressed"	Medtr7g117070.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.204967.1.S1_at	A	A1TS	POPTR_0009s03720	POPTR_0009s03720 (11)	scaffold_9:4318724-4320310(-) (11)	NA	Q6GMF8	Rhomboid family member 1	AT2G29050.1	RHOMBOID-like 1 	LOC_Os11g47840.1	"OsRhmbd18 - Putative Rhomboid homologue, expressed"	Medtr2g116690.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.204968.1.S1_at	A	A1TS	POPTR_0009s03700	POPTR_0009s03700 (11)	scaffold_9:4297863-4298942(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204969.1.S1_at	A	A1TS	POPTR_0009s03690	POPTR_0009s03690 (11)	scaffold_9:4284338-4284642(+) (11)	NA	NA	NA	AT5G24860.1	flowering promoting factor 1 	LOC_Os02g26210.1	"flowering promoting factor-like 1, putative, expressed"	Medtr8g138840.1	"flowering promoting factor-like 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204970.1.S1_s_at	A	A1TS	POPTR_0009s03680	POPTR_0009s03680 (11)	scaffold_9:4277483-4277703(-) (11)	NA	Q9LTC0	Probable receptor-like protein kinase At5g47070	AT2G28940.2	Protein kinase superfamily protein 	LOC_Os02g57420.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr1g076510.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204971.1.S1_at	A	A1TS	POPTR_0009s03620	POPTR_0009s03620 (11)	scaffold_9:4241195-4241788(+) (11)	NA	Q940Q2	"Pentatricopeptide repeat-containing protein At1g07590, mitochondrial"	AT1G07590.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g06500.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g068480.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204972.1.S1_at	A	A1TS	POPTR_0009s03600	POPTR_0009s03600 (11)	scaffold_9:4226949-4227546(+) (11)	NA	NA	NA	AT5G02390.1	Protein of unknown function (DUF3741) 	LOC_Os12g38260.1	expressed protein	Medtr7g087380.1	"{, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204973.1.S1_at	A	A1TS	POPTR_0009s03590	POPTR_0009s03590 (11)	scaffold_9:4208510-4209842(-) (11)	NA	Q9LQN6	Probable protein phosphatase 2C 4	AT1G07630.1	pol-like 5 	LOC_Os03g60650.1	"protein phosphatase 2C, putative, expressed"	Medtr7g067970.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204974.1.S1_at	A	A1TS	POPTR_0009s03570	POPTR_0009s03570 (11)	scaffold_9:4195401-4195738(+) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g01060.1	"protein kinase family protein, putative, expressed"	Medtr8g031980.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.204975.1.S1_at	A	A1TS	POPTR_0009s03560	POPTR_0009s03560 (11)	scaffold_9:4186777-4187074(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204976.1.S1_at	A	A1TS	POPTR_0009s03550	POPTR_0009s03550 (11)	scaffold_9:4177308-4178108(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204977.1.S1_at	A	A1TS	POPTR_0009s03510	POPTR_0009s03510 (11)	scaffold_9:4142191-4143799(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g16790.1	"DHHC zinc finger domain containing protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.204978.1.S1_s_at	A	A2TS	POPTR_0001s24470	POPTR_0009s03460 (11)//POPTR_0001s24470 (11)	scaffold_1:23747895-23747950(-) (11)//scaffold_9:4072344-4072399(-) (11)	NA	Q6X7K1	WUSCHEL-related homeobox 2	AT5G59340.1	WUSCHEL related homeobox 2 	LOC_Os01g62310.1	"homeobox domain containing protein, expressed"	Medtr4g154980.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.204978.1.S1_x_at	A	A1TS	POPTR_0009s03460	POPTR_0009s03460 (11)	scaffold_9:4072291-4072410(-) (11)	NA	Q6X7K1	WUSCHEL-related homeobox 2	AT5G59340.1	WUSCHEL related homeobox 2 	LOC_Os04g55590.1	"homeobox domain containing protein, expressed"	Medtr1g024140.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.204979.1.S1_at	A	A1TS	POPTR_0009s03420	POPTR_0009s03420 (11)	scaffold_9:4050733-4051236(-) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os02g37950.3	"transposon protein, putative, unclassified, expressed"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204980.1.S1_at	A	A1TS	POPTR_0009s03380	POPTR_0009s03380 (10)	scaffold_9:4008058-4009322(-) (11)	NA	NA	NA	AT5G59960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g05830.1	expressed protein	Medtr4g078590.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204981.1.S1_at	A	A1TS	POPTR_0009s03270	POPTR_0009s03270 (11)	scaffold_9:3951387-3953725(-) (11)	NA	NA	NA	AT5G59800.1	methyl-CPG-binding domain 7 	NA	NA	Medtr2g114510.1	Methyl-CpG binding 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.204981.1.S1_s_at	A	A1TS	POPTR_0009s03270	POPTR_0009s03270 (11)	scaffold_9:3951178-3952997(-) (11)	NA	NA	NA	AT5G59800.1	methyl-CPG-binding domain 7 	NA	NA	Medtr2g114510.1	Methyl-CpG binding 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.204982.1.S1_at	A	A1TS	POPTR_0009s03260	POPTR_0009s03260 (11)	scaffold_9:3944776-3947558(+) (11)	NA	NA	NA	AT5G59790.1	Domain of unknown function (DUF966) 	LOC_Os01g62200.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g078980.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204982.1.S1_s_at	A	A1TS	POPTR_0009s03260	POPTR_0009s03260 (11)	scaffold_9:3944343-3944789(+) (11)	NA	NA	NA	AT5G59790.1	Domain of unknown function (DUF966) 	LOC_Os01g62200.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g078980.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204983.1.S1_at	A	A1TS	POPTR_0009s03250	POPTR_0009s03250 (11)	scaffold_9:3936943-3937497(+) (11)	NA	Q9SVP7	Pentatricopeptide repeat-containing protein At4g13650	AT4G13650.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g01860.1	"pentatricopeptide, putative, expressed"	Medtr7g015730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204984.1.S1_at	A	A1TS	POPTR_0009s03200	POPTR_0009s03200 (11)	scaffold_9:3887507-3888080(-) (11)	NA	O54922	Exocyst complex component 7	AT5G59730.1	exocyst subunit exo70 family protein H7 	LOC_Os09g26820.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr4g079170.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.204985.1.S1_at	A	A1TS	POPTR_0009s03170	POPTR_0009s03170 (11)	scaffold_9:3833643-3834064(-) (11)	NA	Q9LX66	Receptor-like protein kinase HERK 1	AT3G46290.1	hercules receptor kinase 1 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g079470.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204986.1.S1_at	A	A1TS	POPTR_0009s03140	POPTR_0009s03140 (11)	scaffold_9:3825170-3826017(+) (11)	NA	NA	NA	AT1G07850.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr2g113940.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204987.1.S1_at	A	A1TS	POPTR_0009s03130	POPTR_0009s03130 (10)	scaffold_9:3815862-3816874(+) (10)	NA	O95628	CCR4-NOT transcription complex subunit 4	AT5G60170.2	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g01190.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g080070.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204988.1.S1_at	A	A1TS	POPTR_0009s03120	POPTR_0009s03120 (11)	scaffold_9:3804541-3805014(-) (11)	NA	Q6PIJ4	Nuclear factor related to kappa-B-binding protein	AT3G45830.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131 (source: NCBI BLink). 	LOC_Os05g02680.1	"nuclear factor related to kappa-B-binding protein, related, putative, expressed"	Medtr2g113980.1	"Nuclear factor related to kappa-B-binding protein, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204989.1.S1_at	A	A1TS	POPTR_0009s03110	POPTR_0009s03110 (11)	scaffold_9:3801305-3801995(+) (11)	NA	O23826	125 kDa kinesin-related protein	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.204990.1.S1_at	A	A1TS	POPTR_0009s03100	POPTR_0009s03100 (11)	scaffold_9:3788270-3789709(+) (11)	NA	Q39224	Protein SRG1	AT4G25300.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g25010.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr5g067830.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.204991.1.S1_at	A	A1TS	POPTR_0009s03090	POPTR_0009s03090 (11)	scaffold_9:3783338-3785336(+) (11)	NA	Q3SZ21	Ribonuclease P protein subunit p30	AT5G59980.2	Polymerase/histidinol phosphatase-like 	LOC_Os11g01074.3	"RNase P subunit p30, putative, expressed"	Medtr2g114050.1	RNase P subunit p30 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004540|ribonuclease activity	NA
PtpAffx.204992.1.S1_at	A	A1TS	POPTR_0009s03070	POPTR_0009s03070 (11)	scaffold_9:3778369-3778889(+) (11)	NA	Q9XES1	"Calcium-transporting ATPase 4, endoplasmic reticulum-type"	AT1G07670.1	endomembrane-type CA-ATPase 4 	LOC_Os03g17310.1	"calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed"	Medtr7g120500.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.204993.1.S1_at	A	A1TS	POPTR_0009s03040	POPTR_0009s03040 (11)	scaffold_9:3758279-3758610(-) (11)	NA	P0C872	JmjC domain-containing protein 7	AT3G45880.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os09g31050.1	"cytosolic phospholipase A2 beta, putative, expressed"	Medtr5g025210.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204994.1.S1_s_at	A	A2TS	POPTR_0001s23960	POPTR_0001s23960 (11)//POPTR_0009s03030 (11)	scaffold_1:23351666-23351754(+) (11)//scaffold_9:3755493-3755581(+) (11)	NA	P54697	Myosin-J heavy chain	AT2G31900.1	myosin-like protein XIF 	LOC_Os03g53660.1	"Myosin head domain containing protein, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.204995.1.S1_x_at	A	A1TS	POPTR_0009s03030	POPTR_0009s03030 (11)	scaffold_9:3753207-3753356(+) (11)	NA	P54697	Myosin-J heavy chain	AT2G31900.1	myosin-like protein XIF 	LOC_Os03g53660.1	"Myosin head domain containing protein, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.204997.1.S1_at	A	A1TS	POPTR_0009s03000	POPTR_0009s03000 (11)	scaffold_9:3727822-3728392(-) (11)	NA	NA	NA	AT2G44260.1	Plant protein of unknown function (DUF946) 	LOC_Os07g38840.1	expressed protein	Medtr2g080320.1	"Protein of unknown function DUF946, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204998.1.S1_at	A	A1TS	POPTR_0009s02990	POPTR_0009s02990 (11)	scaffold_9:3718283-3718925(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204999.1.S1_at	A	A1TS	POPTR_0009s02980	POPTR_0009s02980 (11)	scaffold_9:3707943-3708394(-) (11)	NA	NA	NA	AT1G05577.1	Domain of unknown function (DUF966) 	LOC_Os01g57020.1	expressed protein	Medtr2g080190.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205000.1.S1_at	A	A1TS	POPTR_0009s02970	POPTR_0009s02970 (11)	scaffold_9:3703358-3703750(+) (11)	NA	NA	NA	AT2G31920.1	Plant protein of unknown function (DUF936) 	LOC_Os09g34110.2	expressed protein	Medtr2g080180.1	"Legume lectin, beta domain; Replication factor-A protein 1, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205001.1.S1_at	A	A1TS	POPTR_0009s02960	POPTR_0009s02960 (11)	scaffold_9:3698438-3698946(-) (11)	NA	NA	NA	AT2G31930.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g080170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205002.1.S1_at	A	A1TS	POPTR_0009s02950	POPTR_0009s02950 (11)	scaffold_9:3694739-3696700(+) (11)	NA	Q6NUT3	Uncharacterized MFS-type transporter C19orf28	AT2G44280.2	Major facilitator superfamily protein 	LOC_Os07g39010.1	"lactose permease-related, putative, expressed"	Medtr2g080160.1	"C19orf28 protein, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205003.1.S1_at	A	A2TS	POPTR_0009s02930	POPTR_0009s02930 (11)//POPTR_0650s00220 (10)	scaffold_650:11229-11750(-) (10)//scaffold_9:3676966-3677499(-) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT4G25835.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g27340.1	"ATPase, putative"	Medtr8g128800.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.205004.1.S1_at	A	A1TS	POPTR_0009s02900	POPTR_0009s02900 (11)	scaffold_9:3655632-3658433(+) (11)	NA	Q39055	Molybdopterin biosynthesis protein CNX2	AT2G31955.2	cofactor of nitrate reductase and xanthine dehydrogenase 2 	LOC_Os12g32230.1	"molybdenum cofactor biosynthesis protein 1, putative, expressed"	NA	NA	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	"GO:0003824|catalytic activity||GO:0051539|""4 iron, 4 sulfur cluster binding"""	GO:0019008|molybdopterin synthase complex
PtpAffx.205005.1.S1_at	A	A1TS	POPTR_0009s02891	POPTR_0009s02891 (11)	scaffold_9:3639781-3640151(+) (11)	NA	Q8GX29	F-box/kelch-repeat protein SKIP25	AT1G31350.1	KAR-UP F-box 1 	LOC_Os06g49750.1	"kelch motif family protein, expressed"	Medtr5g026710.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205006.1.S1_at	A	A1TS	POPTR_0009s02870	POPTR_0009s02870 (11)	scaffold_9:3625292-3626075(+) (11)	NA	Q9LND0	Transcription factor bHLH89	AT1G06170.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g51070.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	AC235671_17.1	Helix-loop-helix DNA-binding AC235671.2 74985-73151 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.205007.1.S1_at	A	A1TS	POPTR_0009s02860	POPTR_0009s02860 (11)	scaffold_9:3620076-3620445(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205008.1.S1_a_at	A	A1TS	POPTR_0009s02840	POPTR_0009s02840 (11)	scaffold_9:3593391-3593533(-) (11)//scaffold_9:3593568-3593710(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205009.1.S1_at	A	A1TS	POPTR_0009s02810	POPTR_0009s02810 (10)	scaffold_9:3562512-3563081(-) (10)	NA	NA	NA	AT2G44430.1	DNA-binding bromodomain-containing protein 	LOC_Os07g37800.1	"bromodomain domain containing protein, expressed"	Medtr2g071440.1	Myb transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205011.1.S1_at	A	A1TS	POPTR_0009s02780	POPTR_0009s02780 (11)	scaffold_9:3547483-3548113(-) (11)	NA	Q39224	Protein SRG1	AT1G17020.1	senescence-related gene 1 	LOC_Os10g41020.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235677_19.1	2OG-Fe(II) oxygenase AC235677.1 84535-88047 E EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.205013.1.S1_s_at	A	A1TS	POPTR_0009s02750	POPTR_0009s02750 (11)	scaffold_9:3511264-3511487(+) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.205014.1.S1_s_at	A	A1TS	POPTR_0009s02720	POPTR_0009s02720 (11)	scaffold_9:3469376-3471284(-) (11)	NA	Q55GJ3	Nuclear control of ATPase protein 2	AT5G12290.1	dgd1 suppressor 1 	LOC_Os03g26030.1	expressed protein	Medtr5g095900.1	Nuclear control of ATP synthase 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205016.1.S1_at	A	A1TS	POPTR_0009s02700	POPTR_0009s02700 (11)	scaffold_9:3456530-3457012(-) (11)	NA	NA	NA	AT2G26920.1	Ubiquitin-associated/translation elongation factor EF1B protein 	LOC_Os05g33850.1	"UBA/TS-N domain containing protein, expressed"	Medtr5g095840.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205017.1.S1_at	A	A1TS	POPTR_0009s02680	POPTR_0009s02680 (11)	scaffold_9:3436667-3438786(-) (11)	NA	Q3EAQ5	Probable peptide/nitrate transporter At3g43790	AT3G43790.2	zinc induced facilitator-like 2 	LOC_Os11g04104.2	"major facilitator superfamily antiporter, putative, expressed"	Medtr8g073830.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205018.1.S1_at	A	A1TS	POPTR_0009s02620	POPTR_0009s02620 (11)	scaffold_9:3398677-3399287(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205019.1.S1_at	A	A1TS	POPTR_0009s02550	POPTR_0009s02550 (11)	scaffold_9:3328379-3328544(-) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT1G66150.1	transmembrane kinase 1 	LOC_Os04g58910.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr2g105170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.205020.1.S1_s_at	A	A2TS	POPTR_0009s02530	POPTR_0009s02530 (11)//POPTR_0555s00200 (11)	scaffold_555:4463-4529(-) (11)//scaffold_9:3280010-3280076(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205020.1.S1_x_at	A	A1TS	POPTR_0009s02530	POPTR_0009s02530 (11)	scaffold_9:3279971-3280290(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205021.1.S1_at	A	A1TS	POPTR_0009s02520	POPTR_0009s02520 (11)	scaffold_9:3262228-3263830(-) (11)	NA	Q0WPH8	Serine/threonine-protein kinase Nek5	AT3G44200.1	"NIMA (never in mitosis, gene A)-related 6 "	LOC_Os01g64490.1	"protein kinase domain containing protein, expressed"	Medtr2g105340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205022.1.S1_s_at	A	A1TS	POPTR_0009s02500	POPTR_0009s02500 (11)	scaffold_9:3253049-3253769(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205024.1.S1_at	A	A1TS	POPTR_0009s02490	POPTR_0009s02490 (11)	scaffold_9:3246574-3247121(-) (11)	NA	Q8VZ13	Uncharacterized protein At1g08160	AT2G27260.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os11g05870.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g105350.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.205025.1.S1_at	A	A1TS	POPTR_0009s02460	POPTR_0009s02460 (11)	scaffold_9:3222331-3223056(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205027.1.S1_at	A	A1TS	POPTR_0009s02380	POPTR_0009s02380 (11)	scaffold_9:3124265-3126383(-) (11)	NA	Q0JIC2	Transcription factor GAMYB	AT5G06100.3	myb domain protein 33 	LOC_Os01g59660.2	"MYB family transcription factor, putative, expressed"	Medtr1g025180.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205028.1.S1_at	A	A1TS	POPTR_0009s02380	POPTR_0009s02380 (11)	scaffold_9:3123249-3123787(-) (11)	NA	Q0JIC2	Transcription factor GAMYB	AT5G06100.3	myb domain protein 33 	LOC_Os01g59660.2	"MYB family transcription factor, putative, expressed"	Medtr1g025180.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205029.1.S1_at	A	A1TS	POPTR_0009s02350	POPTR_0009s02350 (11)	scaffold_9:3096067-3096397(-) (11)	NA	Q6PGY5	DnaJ homolog subfamily C member 21	AT1G74250.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os12g31840.1	"ZOS12-05 - C2H2 zinc finger protein, expressed"	Medtr7g132840.1	"Heat shock protein DnaJ, N-terminal; Homeodomain-related; "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.205030.1.S1_at	A	A1TS	POPTR_0009s02350	POPTR_0009s02350 (11)	scaffold_9:3092024-3094477(-) (11)	NA	Q6PGY5	DnaJ homolog subfamily C member 21	AT1G74250.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os12g31840.1	"ZOS12-05 - C2H2 zinc finger protein, expressed"	Medtr7g132840.1	"Heat shock protein DnaJ, N-terminal; Homeodomain-related; "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.205031.1.S1_at	A	A1TS	POPTR_0009s02330	POPTR_0009s02330 (11)	scaffold_9:3068884-3078737(-) (11)	NA	Q6ZQ58	La-related protein 1	AT5G21160.1	LA RNA-binding protein 	LOC_Os01g16110.2	"la domain containing protein, putative, expressed"	Medtr5g095250.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205032.1.S1_at	A	A1TS	POPTR_0009s02270	POPTR_0009s02270 (11)	scaffold_9:3022770-3023704(+) (11)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT2G27230.2	transcription factor-related 	LOC_Os01g64560.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205037.1.S1_at	A	A1TS	POPTR_0497s00200	POPTR_0497s00200 (11)	scaffold_497:5321-5900(-) (11)	NA	Q84TG3	E3 ubiquitin-protein ligase PUB23	AT2G35930.1	plant U-box 23 	LOC_Os02g33590.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.205039.1.S1_at	A	A1TS	POPTR_0009s02140	POPTR_0009s02140 (11)	scaffold_9:2780713-2781281(+) (11)	NA	Q9SF15	E3 ubiquitin-protein ligase PUB24	AT3G11840.1	plant U-box 24 	LOC_Os04g58920.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.205040.1.S1_s_at	A	A1TS	POPTR_0009s02140	POPTR_0009s02140 (11)	scaffold_9:2780107-2780368(+) (11)	NA	Q9SF15	E3 ubiquitin-protein ligase PUB24	AT3G11840.1	plant U-box 24 	LOC_Os04g58920.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.205041.1.S1_at	A	A1TS	POPTR_0009s02110	POPTR_0009s02110 (11)	scaffold_9:2737107-2737473(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G22190.2	IQ-domain 5 	LOC_Os03g44610.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g067020.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205042.1.S1_at	A	A1TS	POPTR_0009s02040	POPTR_0009s02040 (11)	scaffold_9:2657496-2657748(-) (11)	NA	Q680Q4	E3 SUMO-protein ligase SIZ1	AT5G60410.5	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr4g080810.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205042.1.S1_x_at	A	A1TS	POPTR_0009s02040	POPTR_0009s02040 (11)	scaffold_9:2657482-2658081(-) (11)	NA	Q680Q4	E3 SUMO-protein ligase SIZ1	AT5G60410.5	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr4g080810.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205043.1.S1_at	A	A1TS	POPTR_0009s02030	POPTR_0009s02030 (11)	scaffold_9:2650337-2650478(+) (11)	NA	NA	NA	AT1G07970.1	"CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). "	LOC_Os03g17950.1	expressed protein	Medtr4g080820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205044.1.S1_at	A	A1TS	POPTR_0009s01980	POPTR_0009s01980 (10)	scaffold_9:2526182-2526382(+) (10)	NA	Q86VX9	Vacuolar fusion protein MON1 homolog A	AT2G28390.1	SAND family protein 	LOC_Os01g74460.2	"vacuolar fusion protein MON1 homolog A, putative, expressed"	Medtr2g110240.1	Yeast 73.5kDa hypothetical-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205045.1.S1_at	A	A1TS	POPTR_0009s01930	POPTR_0009s01930 (11)	scaffold_9:2403473-2403822(-) (11)	NA	NA	NA	AT2G28410.1	unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g110400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205046.1.S1_at	A	A1TS	POPTR_0009s01920	POPTR_0009s01920 (11)	scaffold_9:2386380-2386425(-) (11)	NA	Q9FF55	Protein disulfide isomerase-like 1-4	AT5G60640.1	PDI-like 1-4 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.205048.1.S1_at	A	A1TS	POPTR_0009s01880	POPTR_0009s01880 (11)	scaffold_9:2359276-2359695(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205049.1.S1_at	A	A1TS	POPTR_0009s01870	POPTR_0009s01870 (11)	scaffold_9:2351656-2352291(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g13460.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205050.1.S1_at	A	A1TS	POPTR_0009s01820	POPTR_0009s01820 (11)	scaffold_9:2317712-2318502(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205051.1.S1_at	A	A1TS	POPTR_0009s01800	POPTR_0009s01800 (10)	scaffold_9:2306467-2307032(-) (10)	NA	NA	NA	AT5G60520.1	Late embryogenesis abundant (LEA) protein-related 	LOC_Os01g73720.1	"RCLEA4 - Root cap and Late embryogenesis related family protein precursor, expressed"	Medtr4g081530.1	Root cap 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205052.1.S1_at	A	A1TS	POPTR_0009s01790	POPTR_0009s01790 (11)	scaffold_9:2302185-2302755(-) (11)	NA	NA	NA	AT5G60520.1	Late embryogenesis abundant (LEA) protein-related 	LOC_Os01g73720.1	"RCLEA4 - Root cap and Late embryogenesis related family protein precursor, expressed"	Medtr4g081530.1	Root cap 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205053.1.S1_at	A	A1TS	POPTR_0009s01710	POPTR_0009s01710 (11)	scaffold_9:2245070-2245637(+) (11)	NA	Q94KB7	MLO-like protein 6	AT1G61560.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr2g110820.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.205054.1.S1_at	A	A1TS	POPTR_0009s01700	POPTR_0009s01700 (11)	scaffold_9:2208226-2209499(-) (11)	NA	Q9ZTX9	Auxin response factor 4	AT5G60450.1	auxin response factor 4 	LOC_Os04g36054.1	"auxin response factor 9, putative, expressed"	Medtr4g081060.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.205055.1.S1_at	A	A1TS	POPTR_0009s01670	POPTR_0009s01670 (11)	scaffold_9:2196816-2197521(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205057.1.S1_at	A	A1TS	POPTR_0009s01640	POPTR_0009s01640 (11)	scaffold_9:2176735-2178566(+) (11)	NA	NA	NA	AT2G28320.1	Pleckstrin homology (PH) and lipid-binding START domains-containing protein 	LOC_Os10g33930.1	"DUF1336 domain containing protein, expressed"	Medtr2g110100.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205059.1.S1_at	A	A1TS	POPTR_0009s01610	POPTR_0009s01610 (11)	scaffold_9:2142398-2142961(+) (11)	NA	NA	NA	AT5G60700.1	glycosyltransferase family protein 2 	LOC_Os02g56260.1	expressed protein	AC233683_2.1	hypothetical protein AC233683.2 9162-5330 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205060.1.S1_at	A	A1TS	POPTR_0009s01600	POPTR_0009s01600 (11)	scaffold_9:2121591-2123961(+) (11)	NA	Q8RUN2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1	AT2G28305.1	Putative lysine decarboxylase family protein 	LOC_Os02g41770.1	"uncharacterized protein PA4923, putative"	Medtr1g076860.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205061.1.S1_at	A	A1TS	POPTR_0009s01560	POPTR_0009s01560 (11)	scaffold_9:2038594-2040295(+) (11)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT2G28250.2	Protein kinase superfamily protein 	LOC_Os02g02040.1	"protein kinase, putative, expressed"	AC233683_8.1	"Serine/threonine protein kinase, active site AC233683.2 51421-47673 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205062.1.S1_at	A	A1TS	POPTR_0009s01550	POPTR_0009s01550 (11)	scaffold_9:2006612-2007170(-) (11)	NA	C0LGQ7	Probable LRR receptor-like serine/threonine-protein kinase At4g20450	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g09960.1	"LYK8, putative, expressed"	AC233683_19.1	Peptidoglycan-binding LysM; Protein kinase-like AC233683.2 109087-110898 H EGN_Mt090430 200	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.205063.1.S1_at	A	A1TS	POPTR_0009s01530	POPTR_0009s01530 (10)	scaffold_9:1960193-1960982(+) (11)	NA	Q9SJJ3	BEL1-like homeodomain protein 8	AT2G27990.1	BEL1-like homeodomain 8 	LOC_Os05g38120.1	"homeodomain protein, putative, expressed"	fpc265_20.1	POX; Homeodomain-related fpc265 87448-90403 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205064.1.S1_at	A	A1TS	POPTR_0009s01520	POPTR_0009s01520 (11)	scaffold_9:1950544-1950813(+) (11)	NA	Q9SJJ3	BEL1-like homeodomain protein 8	AT2G27990.1	BEL1-like homeodomain 8 	LOC_Os05g38120.1	"homeodomain protein, putative, expressed"	fpc265_20.1	POX; Homeodomain-related fpc265 87448-90403 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205065.1.S1_at	A	A1TS	POPTR_0009s01510	POPTR_0009s01510 (11)	scaffold_9:1926259-1926589(+) (11)	NA	P84527	Kiwellin	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	AC235487_37.1	Rare lipoprotein A AC235487.1 151082-151744 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205066.1.S1_at	A	A1TS	POPTR_0009s01480	POPTR_0009s01480 (11)	scaffold_9:1831735-1832116(+) (11)	NA	Q9C7G4	Transcription factor TCP22	AT1G72010.1	TCP family transcription factor  	LOC_Os11g07460.1	"TCP family transcription factor, putative, expressed"	Medtr2g006520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205067.1.S1_at	A	A1TS	POPTR_0009s01380	POPTR_0009s01380 (11)	scaffold_9:1624134-1625364(-) (11)	NA	Q9ZUU9	ABC transporter G family member 3	AT2G28070.1	ABC-2 type transporter family protein 	LOC_Os03g64200.1	"ABC-2 type transporter, putative, expressed"	AC235487_18.1	ABC transporter related AC235487.1 100187-95222 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.205068.1.S1_at	A	A1TS	POPTR_0009s01360	POPTR_0009s01360 (11)	scaffold_9:1623354-1623855(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT2G28080.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os10g30560.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr6g014440.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205070.1.S1_at	A	A1TS	POPTR_0009s01300	POPTR_0009s01300 (11)	scaffold_9:1571644-1572479(+) (11)	NA	NA	NA	AT5G60800.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os02g30650.1	"heavy metal-associated domain containing protein, expressed"	AC235487_8.1	Heavy metal transport/detoxification protein AC235487.1 51831-53181 H EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.205071.1.S1_s_at	A	A2TS	POPTR_0004s22490	POPTR_0009s01270 (11)//POPTR_0004s22490 (11)	scaffold_4:21372855-21373612(-) (11)//scaffold_9:1486018-1486787(+) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G57620.1	myb domain protein 36 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205071.1.S1_x_at	A	A1TS	POPTR_0009s01270	POPTR_0009s01270 (11)	scaffold_9:1486018-1486788(+) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G57620.1	myb domain protein 36 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205073.1.S1_at	A	A1MS	POPTR_0009s01220	POPTR_0009s01220 (11)	scaffold_9:1427058-1427549(+) (11)	NA	P21529	Serine carboxypeptidase 3	AT5G22980.1	serine carboxypeptidase-like 47 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g113720.2	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.205074.1.S1_at	A	A1TS	POPTR_0009s01170	POPTR_0009s01170 (11)	scaffold_9:1304118-1304241(-) (11)	NA	NA	NA	AT3G44960.1	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g31930.1	"shugoshin-1, putative, expressed"	Medtr4g076490.1	hypothetical protein 	GO:0045132|meiotic chromosome segregation	NA	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.205074.1.S1_s_at	A	A1TS	POPTR_0009s01170	POPTR_0009s01170 (11)	scaffold_9:1303551-1304448(-) (11)	NA	NA	NA	AT3G44960.1	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g31930.1	"shugoshin-1, putative, expressed"	Medtr4g076490.1	hypothetical protein 	GO:0045132|meiotic chromosome segregation	NA	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.205075.1.S1_s_at	A	A1TS	POPTR_0009s01160	POPTR_0009s01160 (11)	scaffold_9:1290704-1291270(-) (11)	NA	NA	NA	AT5G22930.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.2	expressed protein	Medtr4g076380.1	Protein of unknown function DUF1635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205076.1.S1_at	A	A1TS	POPTR_0009s01140	POPTR_0009s01140 (11)	scaffold_9:1285397-1286872(+) (11)	NA	Q42572	DNA ligase 1	AT1G08130.1	DNA ligase 1 	LOC_Os10g34750.2	"LIG1 - Putative DNA ligase I, expressed"	Medtr7g094090.1	"ATP-dependent DNA ligase; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003910|DNA ligase (ATP) activity||GO:0005524|ATP binding	NA
PtpAffx.205078.1.S1_at	A	A1TS	POPTR_0009s01100	POPTR_0009s01100 (11)	scaffold_9:1224897-1225918(-) (11)	NA	Q0V7X4	Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR	AT2G28160.1	FER-like regulator of iron uptake 	LOC_Os04g31290.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr4g076190.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.205079.1.S1_at	A	A1TS	POPTR_0009s01060	POPTR_0009s01060 (11)	scaffold_9:1196464-1197293(+) (11)	NA	Q8ND04	Protein SMG8	NA	NA	LOC_Os02g57780.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205080.1.S1_at	A	A1TS	POPTR_0009s01010	POPTR_0009s01010 (11)	scaffold_9:1123034-1123623(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205081.1.S1_at	A	A1TS	POPTR_0009s00980	POPTR_0009s00980 (11)	scaffold_9:1097130-1098233(+) (11)	NA	NA	NA	AT4G37608.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g10755.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205082.1.S1_at	A	A1TS	POPTR_0009s00970	POPTR_0009s00970 (11)	scaffold_9:1095309-1095904(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205083.1.S1_at	A	A1TS	POPTR_0009s00930	POPTR_0009s00930 (11)	scaffold_9:1073623-1074783(+) (11)	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G27980.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205083.1.S1_x_at	A	A1TS	POPTR_0009s00930	POPTR_0009s00930 (11)	scaffold_9:1073623-1074831(+) (11)	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G27980.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205084.1.S1_at	A	A1TS	POPTR_0009s00910	POPTR_0009s00910 (11)	scaffold_9:1051382-1051915(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205085.1.S1_at	A	A1TS	POPTR_0009s00880	POPTR_0009s00880 (11)	scaffold_9:1038678-1040207(-) (11)	NA	NA	NA	AT5G04460.3	RING/U-box superfamily protein 	LOC_Os02g57750.1	"protein binding protein, putative, expressed"	AC235664_10.1	"Zinc finger, RING-type AC235664.1 36110-32388 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205086.1.S1_at	A	A1TS	POPTR_0009s00870	POPTR_0009s00870 (11)	scaffold_9:1008659-1008956(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205087.1.S1_at	A	A1TS	POPTR_0009s00860	POPTR_0009s00860 (9)	scaffold_9:974211-974606(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205088.1.S1_at	A	A1TS	POPTR_0009s00850	POPTR_0009s00850 (11)	scaffold_9:953841-955167(-) (11)	NA	Q5QQ56	Xylosyltransferase 1	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g40060.1	"glycosyltransferase family protein, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.205089.1.S1_at	A	A1TS	POPTR_0009s00830	POPTR_0009s00830 (11)	scaffold_9:942511-943462(+) (11)	NA	NA	NA	AT2G27930.1	PLATZ transcription factor family protein 	LOC_Os08g44620.1	"zinc-binding protein, putative, expressed"	Medtr1g074250.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.205090.1.S1_s_at	A	A1TS	POPTR_0009s00800	POPTR_0009s00800 (11)	scaffold_9:914042-915536(+) (11)	NA	Q96JG6	Coiled-coil domain-containing protein 132	AT2G27900.2	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os10g39910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205091.1.S1_at	A	A1TS	POPTR_0009s00800	POPTR_0009s00800 (11)	scaffold_9:905118-910416(+) (11)	NA	Q96JG6	Coiled-coil domain-containing protein 132	AT2G27900.2	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os10g39910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205092.1.S1_at	A	A1TS	POPTR_0009s00750	POPTR_0009s00750 (11)	scaffold_9:853962-855454(-) (11)	NA	Q7TMR0	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os01g56150.1	"OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.205093.1.S1_at	A	A1TS	POPTR_0009s00720	POPTR_0009s00720 (11)	scaffold_9:814123-819350(-) (11)	NA	Q9EQ15	Guanine nucleotide-binding protein subunit beta-like protein 1	AT4G29860.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g04040.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g153930.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205094.1.S1_at	A	A1TS	POPTR_0009s00690	POPTR_0009s00690 (11)	scaffold_9:787615-788053(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205095.1.S1_at	A	A1TS	POPTR_0009s00660	POPTR_0009s00660 (11)	scaffold_9:745056-745326(+) (11)	NA	Q9SJK3	Argonaute-like protein At2g27880	AT2G27880.1	Argonaute family protein 	LOC_Os03g58600.1	"PAZ domain containing protein, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205098.1.S1_s_at	A	A1TS	POPTR_0009s00640	POPTR_0009s00640 (11)	scaffold_9:680908-681023(-) (11)	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.2	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205099.1.S1_at	A	A1TS	POPTR_0009s00630	POPTR_0009s00630 (9)	scaffold_9:672146-672291(-) (11)	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.2	RING-H2 group F2A 	LOC_Os03g57500.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.3	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205100.1.S1_at	A	A1MS	POPTR_0009s00590	POPTR_0009s00590 (9)	scaffold_9:631201-632140(+) (11)	NA	NA	NA	AT5G22010.1	replication factor C1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205103.1.S1_at	A	A1TS	POPTR_0009s00550	POPTR_0009s00550 (11)	scaffold_9:450990-460407(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205104.1.S1_s_at	A	A2TS	POPTR_0005s06110	POPTR_0231s00250 (11)//POPTR_0005s06110 (11)	scaffold_231:41056-41549(+) (11)//scaffold_5:4023996-4024489(+) (11)	NA	O19922	ATP-dependent zinc metalloprotease FtsH	AT5G64580.1	AAA-type ATPase family protein 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr3g143610.1	"Flagellar basal body rod protein; AAA ATPase, central region; Peptidase M41, FtsH extracellular "	NA	GO:0005524|ATP binding	NA
PtpAffx.205105.1.S1_at	A	A1TS	POPTR_0005s06120	POPTR_0005s06120 (11)	scaffold_5:4028767-4029115(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g08850.1	expressed protein	Medtr4g142640.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205105.1.S1_s_at	A	A2TS	POPTR_0005s06120	POPTR_0005s06120 (11)//POPTR_0231s00260 (10)	scaffold_231:44930-45517(-) (10)//scaffold_5:4028538-4029191(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g08850.1	expressed protein	Medtr4g142640.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205106.1.S1_s_at	A	A4TS	POPTR_0185s00200	POPTR_0731s00200 (11)//POPTR_0185s00200 (11)//POPTR_0185s00210 (10)//POPTR_0005s06300 (9)	scaffold_185:11564-11931(-) (11)//scaffold_185:32891-33258(-) (10)//scaffold_5:4156806-4157173(-) (11)//scaffold_731:18-385(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.205107.1.S1_at	A	A1TS	POPTR_0005s06190	POPTR_0005s06190 (11)	scaffold_5:4066519-4067251(+) (11)	NA	Q9LIQ7	"Pentatricopeptide repeat-containing protein At3g24000, mitochondrial"	AT3G24000.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os11g10740.1	"tetratricopeptide-like helical, putative"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205108.1.S1_at	A	A1TS	POPTR_0005s06200	POPTR_0005s06200 (11)	scaffold_5:4068643-4068926(-) (11)	NA	NA	NA	AT1G43790.1	tracheary element differentiation-related 6 	NA	NA	Medtr1g009760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205109.1.S1_at	A	A1TS	POPTR_0005s06220	POPTR_0005s06220 (11)	scaffold_5:4080942-4081438(-) (11)	NA	O81313	Transcription factor IND	AT4G00120.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g01700.1	"basic helix-loop-helix family protein, putative, expressed"	Medtr4g142590.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.205110.1.S1_at	A	A1TS	POPTR_0005s06240	POPTR_0005s06240 (11)	scaffold_5:4100080-4100880(-) (11)	NA	Q9LIH5	Zinc finger CCCH domain-containing protein 38	AT3G18640.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os08g04170.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr3g143650.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205111.1.S1_at	A	A1TS	POPTR_0005s06250	POPTR_0005s06250 (11)	scaffold_5:4111457-4111645(+) (11)	NA	NA	NA	AT3G13275.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g104400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205112.1.S1_at	A	A1MS	POPTR_0185s00200	POPTR_0185s00200 (11)	scaffold_185:8414-8917(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.205112.1.S1_s_at	A	A1TS	POPTR_0185s00200	POPTR_0185s00200 (11)	scaffold_185:8519-9006(-) (11)//scaffold_185:29084-29571(-) (11)//scaffold_5:4149475-4149936(-) (10)	POPTR_0005s06300 (7)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.205113.1.S1_at	A	A2MS	POPTR_0005s06300	POPTR_0005s06300 (10)//POPTR_0185s00210 (9)	scaffold_185:25024-26350(-) (9)//scaffold_5:4145593-4146920(-) (10)	POPTR_0185s00200 (6)	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.205115.1.S1_at	A	A2TS	POPTR_0005s06300	POPTR_0005s06300 (11)//POPTR_0185s00210 (11)	scaffold_185:33652-33820(-) (11)//scaffold_5:4157567-4157735(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.205115.1.S1_s_at	A	A4TS	POPTR_0185s00200	POPTR_0185s00210 (11)//POPTR_0731s00200 (11)//POPTR_0185s00200 (11)//POPTR_0005s06300 (9)	scaffold_185:12107-12452(-) (11)//scaffold_185:33434-33779(-) (11)//scaffold_5:4157370-4157694(-) (9)//scaffold_731:561-906(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.205116.1.S1_at	A	A1TS	POPTR_0005s06320	POPTR_0005s06320 (11)	scaffold_5:4177485-4178150(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT3G19950.1	RING/U-box superfamily protein 	LOC_Os12g04660.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g100800.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205116.1.S1_s_at	A	A1TS	POPTR_0005s06320	POPTR_0005s06320 (11)	scaffold_5:4177671-4178094(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT3G19950.1	RING/U-box superfamily protein 	LOC_Os12g04660.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g100800.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205117.1.S1_at	A	A1MS	POPTR_0005s06340	POPTR_0005s06340 (11)	scaffold_5:4206944-4207266(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g047020.1	TIR; Heat shock protein Hsp70; NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.205118.1.S1_at	A	A1TS	POPTR_0005s06410	POPTR_0005s06410 (11)	scaffold_5:4278452-4278544(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G33450.1	myb domain protein 69 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr5g044760.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205120.1.S1_at	A	A1TS	POPTR_0005s06430	POPTR_0005s06430 (11)	scaffold_5:4289143-4289679(-) (11)	NA	A7PZL3	Probable polygalacturonase	AT4G33440.1	Pectin lyase-like superfamily protein 	LOC_Os08g01600.1	"polygalacturonase, putative, expressed"	Medtr3g143290.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.205122.1.S1_at	A	A1MS	POPTR_0005s06480	POPTR_0005s06480 (11)	scaffold_5:4328680-4329192(-) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os01g60140.1	"ATCHX15, putative, expressed"	Medtr4g142890.1	Sodium/hydrogen exchanger 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205123.1.S1_at	A	A1MS	POPTR_0005s06480	POPTR_0005s06480 (11)	scaffold_5:4329830-4329947(-) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os01g60140.1	"ATCHX15, putative, expressed"	Medtr4g142890.1	Sodium/hydrogen exchanger 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205123.1.S1_x_at	A	A1MS	POPTR_0005s06480	POPTR_0005s06480 (11)	scaffold_5:4329836-4329981(-) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os01g60140.1	"ATCHX15, putative, expressed"	Medtr4g142890.1	Sodium/hydrogen exchanger 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205125.1.S1_at	A	A1TS	POPTR_0005s06550	POPTR_0005s06550 (11)	scaffold_5:4379605-4380405(+) (11)	NA	Q9C8G4	Probable pectate lyase 4	AT5G09280.1	Pectin lyase-like superfamily protein 	LOC_Os08g18970.1	pectate lyase family protein	Medtr3g029900.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205126.1.S1_s_at	A	A1TS	POPTR_0005s06570	POPTR_0005s06570 (11)	scaffold_5:4388091-4388682(+) (11)	NA	NA	NA	AT1G76980.1	BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). 	NA	NA	Medtr3g143160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205127.1.S1_s_at	A	A1TS	POPTR_0005s06540	POPTR_0005s06540 (11)	scaffold_5:4376871-4377414(+) (11)	NA	Q9FMY1	Cytochrome P450 86B1	AT4G39490.1	"cytochrome P450, family 96, subfamily A, polypeptide 10 "	LOC_Os03g04650.1	"cytochrome P450 protein, putative, expressed"	Medtr4g137010.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.205128.1.S1_at	A	A1TS	POPTR_0005s06560	POPTR_0005s06560 (10)	scaffold_5:4384809-4385434(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205130.1.S1_at	A	A1TS	POPTR_0005s06600	POPTR_0005s06600 (11)	scaffold_5:4416421-4419509(-) (11)	NA	NA	NA	AT5G64010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g142970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205131.1.S1_s_at	A	A2TS	POPTR_0004s08910	POPTR_0004s08910 (11)//POPTR_0005s06620 (11)	scaffold_4:7501586-7501903(+) (11)//scaffold_5:4408997-4409311(-) (11)//scaffold_5:4431078-4431392(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.205132.1.S1_at	A	A1TS	POPTR_0005s06650	POPTR_0005s06650 (11)	scaffold_5:4456306-4456523(+) (11)	NA	Q9SIT9	Nuclear transcription factor Y subunit B-7	AT2G13570.1	"nuclear factor Y, subunit B7 "	LOC_Os07g41580.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr4g143060.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.205132.1.S1_x_at	A	A1TS	POPTR_0005s06650	POPTR_0005s06650 (11)	scaffold_5:4456259-4456523(+) (11)	NA	Q9SIT9	Nuclear transcription factor Y subunit B-7	AT2G13570.1	"nuclear factor Y, subunit B7 "	LOC_Os07g41580.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr4g143060.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.205133.1.S1_at	A	A1TS	POPTR_0005s06670	POPTR_0005s06670 (9)	scaffold_5:4466869-4467090(+) (10)	NA	NA	NA	NA	NA	LOC_Os02g49930.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205134.1.S1_at	A	A1TS	POPTR_0005s06690	POPTR_0005s06690 (11)	scaffold_5:4488895-4489998(-) (11)	NA	Q9LRE6	DNA polymerase delta catalytic subunit	AT5G63960.1	DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases 	LOC_Os11g08330.1	"POLD1 - Putative DNA polymerase delta catalytic subunit, expressed"	Medtr3g143070.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.205135.1.S1_at	A	A1TS	POPTR_0005s06720	POPTR_0005s06720 (11)	scaffold_5:4510152-4510319(-) (11)	NA	O65515	GATA transcription factor 7	AT4G36240.1	GATA transcription factor 7 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr4g097100.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.205136.1.S1_at	A	A1TS	POPTR_0005s06760	POPTR_0005s06760 (11)	scaffold_5:4527484-4527854(+) (11)	NA	NA	NA	AT4G30770.1	Putative membrane lipoprotein 	LOC_Os11g09030.1	expressed protein	Medtr4g143170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205137.1.S1_at	A	A1TS	POPTR_0005s06780	POPTR_0005s06780 (11)	scaffold_5:4544030-4544498(+) (11)	NA	Q0WP85	"Pentatricopeptide repeat-containing protein At2g13420, mitochondrial"	AT1G20300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os08g28180.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g009820.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205138.1.S1_at	A	A1TS	POPTR_0005s06830	POPTR_0005s06830 (11)	scaffold_5:4597982-4598345(+) (11)	NA	Q8RWD6	F-box protein At5g39450	AT5G39450.1	F-box family protein 	LOC_Os08g01430.1	"OsFBX260 - F-box domain containing protein, expressed"	Medtr3g142910.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205138.1.S1_x_at	A	A1TS	POPTR_0005s06830	POPTR_0005s06830 (11)	scaffold_5:4597750-4598343(+) (11)	NA	Q8RWD6	F-box protein At5g39450	AT5G39450.1	F-box family protein 	LOC_Os08g01430.1	"OsFBX260 - F-box domain containing protein, expressed"	Medtr3g142910.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205139.1.S1_at	A	A1TS	POPTR_0005s06850	POPTR_0005s06850 (11)	scaffold_5:4605327-4605754(+) (11)	NA	Q55EX9	Putative methyltransferase DDB_G0268948	AT5G10830.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g40660.1	"methyltransferase, putative, expressed"	Medtr7g107220.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.205140.1.S1_at	A	A1TS	POPTR_0005s06880	POPTR_0005s06880 (11)	scaffold_5:4614751-4615840(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205141.1.S1_at	A	A1TS	POPTR_0005s06890	POPTR_0005s06890 (11)	scaffold_5:4624907-4627172(+) (11)	NA	NA	NA	AT1G77310.1	BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G21610.1); Has 493 Blast hits to 482 proteins in 163 species: Archae - 0; Bacteria - 100; Metazoa - 172; Fungi - 66; Plants - 65; Viruses - 7; Other Eukaryotes - 83 (source: NCBI BLink). 	LOC_Os01g66050.1	"wound-responsive family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205143.1.S1_at	A	A1TS	POPTR_0005s06910	POPTR_0005s06910 (11)	scaffold_5:4636642-4637158(-) (11)	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT3G57710.1	Protein kinase superfamily protein 	LOC_Os07g31250.1	"OsWAK69 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g089090.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205144.1.S1_at	A	A1MS	POPTR_0005s06920	POPTR_0005s06920 (11)	scaffold_5:4641345-4641794(-) (11)	NA	NA	NA	AT2G04220.1	Plant protein of unknown function (DUF868) 	LOC_Os02g10530.1	expressed protein	Medtr5g078120.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205145.1.S1_at	A	A1TS	POPTR_0005s06930	POPTR_0005s06930 (11)	scaffold_5:4655679-4659572(+) (11)	NA	Q1JQC6	NAD-dependent ADP-ribosyltransferase sirtuin-4	AT5G09230.7	sirtuin 2 	LOC_Os12g07950.1	"transcriptional regulator Sir2 family protein, putative, expressed"	AC235665_38.3	Silent information regulator protein Sir2 AC235665.2 203843-196699 E EGN_Mt090430 200	GO:0006476|protein amino acid deacetylation||GO:0034645|cellular macromolecule biosynthetic process||GO:0006342|chromatin silencing	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides""||GO:0070403|NAD binding||GO:0008270|zinc ion binding"	NA
PtpAffx.205146.1.S1_at	A	A1TS	POPTR_0005s06940	POPTR_0005s06940 (11)	scaffold_5:4661562-4662555(+) (11)	NA	Q8VY52	"PsbP domain-containing protein 2, chloroplastic"	AT2G28605.1	Photosystem II reaction center PsbP family protein 	LOC_Os04g35530.1	expressed protein	AC235665_39.1	Photosystem II oxygen evolving complex protein PsbP AC235665.2 215841-217944 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205147.1.S1_at	A	A1TS	POPTR_0005s06950	POPTR_0005s06950 (9)	scaffold_5:4666733-4667427(+) (11)	NA	O60113	Uncharacterized amino-acid permease C15C4.04c	AT2G01170.1	bidirectional amino acid transporter 1 	LOC_Os04g35540.1	"amino acid permease family protein, putative, expressed"	AC235665_40.1	Amino acid/polyamine transporter I AC235665.2 219297-222930 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205148.1.S1_at	A	A1TS	POPTR_0005s06960	POPTR_0005s06960 (11)	scaffold_5:4668069-4668293(-) (11)	NA	NA	NA	AT3G52430.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os11g09010.3	"lipase, putative, expressed"	Medtr4g143520.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205150.1.S1_at	A	A1TS	POPTR_0005s07030	POPTR_0005s07030 (11)	scaffold_5:4716067-4716537(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205151.1.S1_at	A	A1TS	POPTR_0005s07040	POPTR_0005s07040 (11)	scaffold_5:4716615-4721539(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205153.1.S1_at	A	A1TS	POPTR_0005s07120	POPTR_0005s07120 (11)	scaffold_5:4774381-4774926(+) (11)	NA	NA	NA	AT1G21740.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g35070.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr3g142600.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205154.1.S1_at	A	A1TS	POPTR_0005s07130	POPTR_0005s07130 (11)	scaffold_5:4784816-4787122(+) (11)	NA	B2V855	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT5G64440.1	fatty acid amide hydrolase 	LOC_Os12g07150.1	"amidase family protein, putative, expressed"	Medtr4g143970.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.205155.1.S1_at	A	A1TS	POPTR_0005s07170	POPTR_0005s07170 (11)	scaffold_5:4817847-4819279(-) (11)	NA	NA	NA	AT5G08720.1	CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g62170.1	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205155.1.S1_s_at	A	A1TS	POPTR_0005s07170	POPTR_0005s07170 (11)	scaffold_5:4819229-4819505(-) (11)	NA	NA	NA	AT5G08720.1	CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g62170.1	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205158.1.S1_at	A	A1TS	POPTR_0005s07200	POPTR_0005s07200 (10)	scaffold_5:4847000-4851450(-) (11)	NA	Q5PQN1	Probable E3 ubiquitin-protein ligase HERC4	AT5G08710.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os11g34320.1	"regulator of chromosome condensation, putative, expressed"	Medtr3g142480.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205159.1.S1_at	A	A1TS	POPTR_0005s07210	POPTR_0005s07210 (11)	scaffold_5:4873959-4874892(+) (11)	NA	Q9C7T4	Transcription factor bHLH96	AT1G72210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os10g23050.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr7g139590.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.205160.1.S1_at	A	A1TS	POPTR_0005s07230	POPTR_0005s07230 (11)	scaffold_5:4888806-4889368(+) (11)	NA	NA	NA	AT2G46550.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3). 	NA	NA	Medtr3g102260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205161.1.S1_at	A	A1TS	POPTR_0005s07240	POPTR_0005s07240 (11)	scaffold_5:4890149-4890711(-) (11)	NA	P0CE10	"Putative uncharacterized protein At4g01020, chloroplastic"	AT5G10370.1	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related 	LOC_Os07g42900.1	"helicase domain-containing protein, putative, expressed"	Medtr3g102250.1	"von Willebrand factor, type C; Helicase, C-terminal; Zinc finger, RING-type; Zinc finger, C6HC-type; Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.205162.1.S1_at	A	A1TS	POPTR_0005s07280	POPTR_0005s07280 (11)	scaffold_5:4928519-4929646(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205163.1.S1_at	A	A1TS	POPTR_0005s07320	POPTR_0005s07320 (11)	scaffold_5:4974338-4974570(-) (11)	NA	Q54Q92	LMBR1 domain-containing protein 2 homolog A	AT5G65290.1	LMBR1-like membrane protein 	LOC_Os02g52160.1	"LMBR1 integral membrane protein, putative, expressed"	Medtr3g102140.1	LMBR1-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205164.1.S1_at	A	A1TS	POPTR_0005s07330	POPTR_0005s07330 (11)	scaffold_5:5003502-5006173(+) (11)	NA	Q8N9R8	Protein SCAI	AT4G40050.1	Protein of unknown function (DUF3550/UPF0682) 	LOC_Os09g29470.1	"AGAP005770-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205165.1.S1_at	A	A1TS	POPTR_0005s07350	POPTR_0005s07350 (11)	scaffold_5:5021372-5021822(+) (11)	NA	NA	NA	AT4G40020.1	Myosin heavy chain-related protein 	LOC_Os08g37500.1	expressed protein	Medtr3g102090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205166.1.S1_at	A	A1MS	POPTR_0005s07400	POPTR_0005s07400 (10)	scaffold_5:5066758-5067677(+) (10)	NA	Q1HFZ0	tRNA (cytosine-5-)-methyltransferase NSUN2	AT2G22400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g29630.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr3g101990.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205167.1.S1_s_at	A	A2TS	POPTR_0005s07420	POPTR_0530s00210 (11)//POPTR_0005s07420 (11)	scaffold_5:5080699-5081251(+) (11)//scaffold_530:4801-5353(-) (11)	NA	Q8RXN0	ABC transporter G family member 11	AT1G17840.1	white-brown complex homolog protein 11 	LOC_Os09g29660.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g120680.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.205168.1.S1_at	A	A1TS	POPTR_0005s07460	POPTR_0005s07460 (11)	scaffold_5:5097687-5097928(-) (11)	NA	NA	NA	AT1G71090.1	Auxin efflux carrier family protein 	LOC_Os08g09190.1	"auxin efflux carrier component, putative, expressed"	Medtr5g068420.1	Auxin Efflux Carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205169.1.S1_at	A	A1TS	POPTR_0005s07480	POPTR_0005s07480 (11)	scaffold_5:5103897-5105745(+) (11)	NA	NA	NA	AT5G10320.1	unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g37810.2	expressed protein	Medtr3g101930.1	"80A08_29, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205169.1.S1_s_at	A	A1TS	POPTR_0005s07480	POPTR_0005s07480 (11)	scaffold_5:5103921-5106552(+) (11)	NA	NA	NA	AT5G10320.1	unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g37810.2	expressed protein	Medtr3g101930.1	"80A08_29, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205170.1.S1_at	A	A1TS	POPTR_0005s07520	POPTR_0005s07520 (11)	scaffold_5:5121729-5122235(-) (11)	NA	B8HLD2	Chaperone protein dnaJ	AT2G22360.1	DNAJ heat shock family protein 	LOC_Os05g26926.1	"chaperone protein dnaJ, putative, expressed"	Medtr3g101890.1	Chaperone DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.205171.1.S1_at	A	A1TS	POPTR_0005s07530	POPTR_0005s07530 (11)	scaffold_5:5136103-5136511(-) (11)	NA	Q3E9N1	"Pentatricopeptide repeat-containing protein At4g39952, mitochondrial"	AT4G39952.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g38980.1	"pentatricopeptide, putative, expressed"	Medtr5g101670.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205172.1.S1_at	A	A1TS	POPTR_0005s07540	POPTR_0005s07540 (10)	scaffold_5:5143630-5146275(-) (10)	NA	Q1LZ86	Monoacylglycerol lipase ABHD6	AT4G39955.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g42994.1	"hydrolase, putative, expressed"	Medtr3g101880.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205173.1.S1_at	A	A1TS	POPTR_0005s07590	POPTR_0005s07590 (11)	scaffold_5:5195019-5195399(-) (11)	NA	Q8GWP0	Transcription factor MYB39	AT1G34670.1	myb domain protein 93 	LOC_Os06g11780.1	"MYB family transcription factor, putative"	Medtr4g107720.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205173.1.S1_s_at	A	A2TS	POPTR_0005s07590	POPTR_0007s05360 (11)//POPTR_0005s07590 (11)	scaffold_5:5194994-5195596(-) (11)//scaffold_7:3454472-3455076(-) (11)	NA	Q8GWP0	Transcription factor MYB39	AT1G34670.1	myb domain protein 93 	LOC_Os06g11780.1	"MYB family transcription factor, putative"	Medtr4g107720.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205174.1.S1_at	A	A1TS	POPTR_0005s07600	POPTR_0005s07600 (11)	scaffold_5:5202965-5203879(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205175.1.S1_at	A	A1TS	POPTR_0005s07620	POPTR_0005s07620 (11)	scaffold_5:5214908-5215403(-) (11)	NA	Q15814	Tubulin-specific chaperone C	AT4G39920.1	C-CAP/cofactor C-like domain-containing protein 	LOC_Os02g35110.1	"tubulin binding cofactor C, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205176.1.S1_at	A	A1TS	POPTR_0005s07670	POPTR_0005s07670 (11)	scaffold_5:5257366-5257628(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205177.1.S1_at	A	A1TS	POPTR_0005s07680	POPTR_0005s07680 (11)	scaffold_5:5260177-5261248(-) (11)	NA	O80501	Ras-related protein RABH1B	AT5G10260.1	RAB GTPase homolog H1E 	LOC_Os07g31370.1	"ras-related protein, putative, expressed"	Medtr5g014080.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.205178.1.S1_s_at	A	A1TS	POPTR_0005s07710	POPTR_0005s07710 (11)	scaffold_5:5275401-5276888(-) (11)	NA	Q6YC49	UDP-N-acetylglucosamine transporter	AT5G65000.1	Nucleotide-sugar transporter family protein 	LOC_Os02g36390.4	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr5g106860.1	Nucleotide-sugar transporter 	NA	NA	GO:0016020|membrane
PtpAffx.205180.1.S1_at	A	A1TS	POPTR_0005s07790	POPTR_0005s07790 (11)	scaffold_5:5337709-5338232(-) (11)	NA	Q3ZBR5	Tetratricopeptide repeat protein 1	AT5G10200.1	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein 	LOC_Os05g34820.1	expressed protein	AC232874_13.1	Tetratricopeptide-like helical AC232874.1 44658-42406 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205181.1.S1_s_at	A	A1TS	POPTR_0005s07800	POPTR_0005s07800 (11)	scaffold_5:5350484-5350611(+) (11)	NA	P0CB23	Uncharacterized protein At4g38062	AT4G38070.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr5g033460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205183.1.S1_at	A	A1MS	POPTR_0005s07840	POPTR_0005s07840 (11)	scaffold_5:5385340-5385382(+) (11)	NA	Q5SUC9	"Protein SCO1 homolog, mitochondrial"	AT4G39740.1	Thioredoxin superfamily protein 	LOC_Os09g20430.1	"SCO1 protein homolog, mitochondrial precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205184.1.S1_at	A	A1TS	POPTR_0005s07850	POPTR_0005s07850 (11)	scaffold_5:5388368-5390182(+) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT5G65160.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g51730.1	"dnaJ homolog subfamily C member 7, putative, expressed"	Medtr3g101390.1	Tetratricopeptide-like helical; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205185.1.S1_at	A	A1TS	POPTR_0005s07870	POPTR_0005s07870 (11)	scaffold_5:5396370-5396437(-) (11)	NA	NA	NA	AT2G22170.1	"Lipase/lipooxygenase, PLAT/LH2 family protein "	LOC_Os06g11812.1	"wound/stress protein, putative, expressed"	Medtr3g101350.1	"Lipase/lipooxygenase, PLAT/LH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205185.1.S1_s_at	A	A1TS	POPTR_0005s07870	POPTR_0005s07870 (11)	scaffold_5:5396471-5396918(-) (11)	NA	NA	NA	AT2G22170.1	"Lipase/lipooxygenase, PLAT/LH2 family protein "	LOC_Os06g11812.1	"wound/stress protein, putative, expressed"	Medtr3g101350.1	"Lipase/lipooxygenase, PLAT/LH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205186.1.S1_at	A	A1TS	POPTR_0005s07880	POPTR_0005s07880 (11)	scaffold_5:5400313-5400838(+) (11)	NA	NA	NA	AT2G22180.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g09160.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr5g094840.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.205187.1.S1_at	A	A1TS	POPTR_0005s07890	POPTR_0005s07890 (11)	scaffold_5:5411517-5411762(-) (11)	NA	O50401	Trehalose-phosphate phosphatase	AT5G65140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g31630.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr5g072070.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.205187.1.S1_s_at	A	A1TS	POPTR_0005s07890	POPTR_0005s07890 (11)	scaffold_5:5410432-5411530(-) (11)	POPTR_0007s05670 (8)	O50401	Trehalose-phosphate phosphatase	AT5G65140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g31630.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr5g072070.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.205188.1.S1_at	A	A1TS	POPTR_0005s07910	POPTR_0005s07910 (11)	scaffold_5:5462969-5464003(-) (11)	NA	NA	NA	AT5G10110.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g51640.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205189.1.S1_at	A	A1TS	POPTR_0005s07960	POPTR_0005s07960 (11)	scaffold_5:5486916-5488317(-) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205190.1.S1_at	A	A1TS	POPTR_0005s07970	POPTR_0005s07970 (11)	scaffold_5:5488844-5490022(-) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT5G65090.1	DNAse I-like superfamily protein 	LOC_Os02g51600.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr4g140410.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205191.1.S1_at	A	A1TS	POPTR_0005s07980	POPTR_0005s07980 (11)	scaffold_5:5493487-5494008(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205193.1.S1_at	A	A1TS	POPTR_0005s08030	POPTR_0005s08030 (11)	scaffold_5:5519227-5520022(+) (11)	NA	Q5B5X8	"Probable glucan 1,3-beta-glucosidase A"	NA	NA	LOC_Os10g22570.1	"cellulase, putative, expressed"	Medtr3g010400.1	"Glycoside hydrolase, family 5; Actin-crosslinking proteins "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.205194.1.S1_at	A	A1TS	POPTR_0005s08060	POPTR_0005s08060 (11)	scaffold_5:5555297-5555764(+) (11)	NA	Q9SDN0	"Chaperone protein dnaJ 20, chloroplastic"	AT4G13830.2	DNAJ-like 20 	LOC_Os01g01160.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g008610.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.205195.1.S1_at	A	A1TS	POPTR_0005s08080	POPTR_0005s08080 (11)	scaffold_5:5564772-5566476(+) (11)	NA	O04722	Sulfate transporter 2.1	AT5G10180.1	slufate transporter 2;1 	LOC_Os03g09940.1	"sulfate transporter, putative, expressed"	Medtr3g101160.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.205196.1.S1_at	A	A1TS	POPTR_0005s08090	POPTR_0005s08090 (11)	scaffold_5:5569772-5570701(-) (11)	NA	NA	NA	AT4G39810.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os10g26730.1	"exonuclease, putative, expressed"	Medtr4g140330.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205197.1.S1_at	A	A1TS	POPTR_0005s08130	POPTR_0005s08130 (11)	scaffold_5:5594712-5595245(+) (11)	NA	NA	NA	AT5G06920.1	FASCICLIN-like arabinogalactan protein 21 precursor 	LOC_Os02g28970.2	expressed protein	Medtr4g141800.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205200.1.S1_at	A	A1MS	POPTR_0005s08260	POPTR_0005s08260 (10)	scaffold_5:5690224-5691722(+) (10)	NA	Q9NQG5	Regulation of nuclear pre-mRNA domain-containing protein 1B	AT5G65180.1	ENTH/VHS family protein 	LOC_Os04g54420.1	"protein of unknown function, DUF618 domain containing protein, expressed"	Medtr3g101010.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205201.1.S1_at	A	A1TS	POPTR_0005s08310	POPTR_0005s08310 (10)	scaffold_5:5724835-5725257(+) (10)	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G01150.1	RING-H2 finger protein 2B 	LOC_Os02g45710.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g100920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205202.1.S1_at	A	A1TS	POPTR_0005s08320	POPTR_0005s08320 (9)	scaffold_5:5730454-5730738(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g140590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205203.1.S1_at	A	A1TS	POPTR_0005s08330	POPTR_0005s08330 (11)	scaffold_5:5734615-5736664(-) (11)	NA	NA	NA	AT2G22120.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os11g39130.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g100910.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205204.1.S1_at	A	A1MS	POPTR_0005s08350	POPTR_0005s08350 (10)	scaffold_5:5755879-5756019(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205205.1.S1_at	A	A1MS	POPTR_0005s08380	POPTR_0005s08380 (10)	scaffold_5:5789373-5789853(-) (10)	NA	Q940M2	"Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial"	AT4G39660.1	alanine:glyoxylate aminotransferase 2 	LOC_Os03g07570.4	"aminotransferase, putative, expressed"	Medtr4g140630.1	"Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.205206.1.S1_at	A	A1TS	POPTR_0005s08400	POPTR_0005s08400 (11)	scaffold_5:5804447-5804581(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205207.1.S1_at	A	A1TS	POPTR_0005s08410	POPTR_0005s08410 (10)	scaffold_5:5811020-5811597(+) (11)	NA	Q9SV96	"Pentatricopeptide repeat-containing protein At4g39620, chloroplastic"	AT4G39620.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g51480.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g140640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205208.1.S1_at	A	A1TS	POPTR_0005s08420	POPTR_0005s08420 (11)	scaffold_5:5812593-5813618(-) (11)	NA	NA	NA	AT4G39630.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g19370.1	expressed protein	Medtr6g025300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205209.1.S1_at	A	A1TS	POPTR_0005s08440	POPTR_0005s08440 (11)	scaffold_5:5830904-5831161(+) (11)	POPTR_0004s10700 (7)	NA	NA	AT5G62380.1	NAC-domain protein 101 	LOC_Os06g01480.1	"NAC domain containing protein, putative, expressed"	Medtr7g143100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.205210.1.S1_at	A	A1TS	POPTR_0005s08450	POPTR_0005s08450 (11)	scaffold_5:5844075-5845358(+) (11)	NA	Q9US04	Gamma-glutamyltranspeptidase 1	AT4G39640.2	gamma-glutamyl transpeptidase 1 	LOC_Os04g38450.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr3g100890.1	Gamma-glutamyltranspeptidase 	NA	GO:0003840|gamma-glutamyltransferase activity	NA
PtpAffx.205211.1.S1_at	A	A1TS	POPTR_0005s08460	POPTR_0005s08460 (11)	scaffold_5:5853612-5856249(+) (11)	NA	Q9Y4C1	Lysine-specific demethylase 3A	AT3G07610.1	Transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os03g31594.2	"jmjC domain containing protein, expressed"	Medtr1g143370.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205212.1.S1_at	A	A1TS	POPTR_0005s08520	POPTR_0005s08520 (11)	scaffold_5:5929041-5930819(-) (11)	NA	O64862	Cytoplasmic tRNA 2-thiolation protein 1	AT2G44270.1	repressor of lrx1 	LOC_Os02g52470.2	"ATP-binding domain-containing protein, putative, expressed"	Medtr3g163830.1	PP-loop 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205213.1.S1_at	A	A1TS	POPTR_0005s08530	POPTR_0005s08530 (11)	scaffold_5:5938274-5938844(+) (11)	NA	Q9LV85	Protein CPR-5	AT5G64930.1	"CPR5 protein, putative "	LOC_Os02g53070.1	"HYS1, putative, expressed"	Medtr3g144950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205214.1.S1_at	A	A1TS	POPTR_0005s08570	POPTR_0005s08570 (11)	scaffold_5:5963863-5965498(+) (11)	NA	Q9SIZ8	E3 ubiquitin-protein ligase RKP	AT2G22010.2	related to KPC1 	LOC_Os07g43380.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g144940.1	"Zinc finger, RING-type; B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205215.1.S1_s_at	A	A1TS	POPTR_0005s08590	POPTR_0005s08590 (11)	scaffold_5:5980365-5980951(+) (11)	NA	NA	NA	AT2G21990.1	"Protein of unknown function, DUF617 "	LOC_Os01g59200.1	"DUF617 domain containing protein, expressed"	Medtr3g144870.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205216.1.S1_at	A	A1TS	POPTR_0005s08620	POPTR_0005s08620 (11)	scaffold_5:5994290-5994665(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205217.1.S1_at	A	A1TS	POPTR_0005s08630	POPTR_0005s08630 (11)	scaffold_5:5995274-5995861(-) (11)	NA	NA	NA	AT2G21960.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 	LOC_Os04g54640.1	"peptidase, cysteine peptidase active site, putative, expressed"	Medtr2g077520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205218.1.S1_at	A	A1TS	POPTR_0005s08680	POPTR_0005s08680 (11)	scaffold_5:6045934-6049883(+) (11)	NA	Q9LV93	ABC transporter F family member 5	AT5G64840.1	general control non-repressible 5 	LOC_Os11g39020.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g144690.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.205219.1.S1_at	A	A1TS	POPTR_0005s08720	POPTR_0005s08720 (11)	scaffold_5:6067645-6070075(-) (11)	NA	Q93WU9	Probable WRKY transcription factor 51	AT5G64810.1	WRKY DNA-binding protein 51 	LOC_Os05g46020.1	"OsWRKY7 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g141020.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.205220.1.S1_at	A	A1TS	POPTR_0005s08730	POPTR_0005s08730 (11)	scaffold_5:6085962-6087647(+) (11)	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.205221.1.S1_at	A	A1TS	POPTR_0005s08770	POPTR_0005s08770 (11)	scaffold_5:6115022-6116709(+) (11)	NA	NA	NA	AT4G39470.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205222.1.S1_at	A	A1TS	POPTR_0005s08780	POPTR_0005s08780 (11)	scaffold_5:6124379-6124927(+) (11)	NA	NA	NA	AT2G21860.1	violaxanthin de-epoxidase-related 	LOC_Os01g51860.1	"violaxanthin de-epoxidase, putative, expressed"	Medtr4g141060.1	Violaxanthin de-epoxidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205223.1.S1_at	A	A1MS	POPTR_0005s08800	POPTR_0005s08800 (11)	scaffold_5:6144241-6147614(-) (11)	NA	Q55GD2	Leucine-rich repeat-containing protein DDB_G0268328	AT4G39420.2	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g08750.2	expressed protein	Medtr4g141130.1	Cyclic nucleotide-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205224.1.S1_at	A	A1MS	POPTR_0005s08800	POPTR_0005s08800 (10)	scaffold_5:6149046-6149896(-) (10)	NA	Q55GD2	Leucine-rich repeat-containing protein DDB_G0268328	AT4G39420.2	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g08750.2	expressed protein	Medtr4g141130.1	Cyclic nucleotide-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205225.1.S1_at	A	A1TS	POPTR_0005s08830	POPTR_0005s08830 (11)	scaffold_5:6153980-6154620(-) (11)	NA	NA	NA	AT4G39420.2	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g08750.2	expressed protein	Medtr4g141160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205226.1.S1_at	A	A1TS	POPTR_0005s08850	POPTR_0005s08850 (11)	scaffold_5:6169492-6170065(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g014420.1	"CK25, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205227.1.S1_s_at	A	A1TS	POPTR_0005s08900	POPTR_0005s08900 (11)	scaffold_5:6233237-6234243(+) (11)	NA	Q8LJT8	TSL-kinase interacting protein 1	AT4G39380.1	BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits to 74 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g13790.2	"myb/SANT domain protein, putative, expressed"	Medtr4g141280.1	"myb/SANT domain protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205228.1.S1_at	A	A1MS	POPTR_0005s08910	POPTR_0005s08910 (11)	scaffold_5:6238489-6239674(+) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr4g141300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205229.1.S1_s_at	A	A1TS	POPTR_0005s08950	POPTR_0005s08950 (11)	scaffold_5:6275153-6276285(-) (11)	NA	Q9SJ20	Ribonucleoside-diphosphate reductase large subunit	AT2G21790.1	ribonucleotide reductase 1 	LOC_Os06g07210.1	"ribonucleoside-diphosphate reductase large subunit, putative, expressed"	Medtr4g141590.1	"Ribonucleotide reductase R1 subunit, N-terminal; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0055114|oxidation reduction	GO:0005524|ATP binding||GO:0004748|ribonucleoside-diphosphate reductase activity	GO:0005971|ribonucleoside-diphosphate reductase complex
PtpAffx.205230.1.S1_at	A	A1TS	POPTR_0005s08960	POPTR_0005s08960 (11)	scaffold_5:6285254-6285837(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205231.1.S1_at	A	A1TS	POPTR_0005s08980	POPTR_0005s08980 (11)	scaffold_5:6308549-6308761(-) (11)	NA	B5X4E0	Calumenin-B	AT5G08580.1	Calcium-binding EF hand family protein 	LOC_Os02g12880.4	"calcium-binding EF hand family protein, putative, expressed"	Medtr8g024400.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205231.1.S1_s_at	A	A1TS	POPTR_0005s08980	POPTR_0005s08980 (11)	scaffold_5:6308278-6310530(-) (11)	NA	B5X4E0	Calumenin-B	AT5G08580.1	Calcium-binding EF hand family protein 	LOC_Os02g12880.4	"calcium-binding EF hand family protein, putative, expressed"	Medtr8g024400.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205232.1.S1_at	A	A1TS	POPTR_0005s09020	POPTR_0005s09020 (11)	scaffold_5:6337497-6337970(-) (11)	NA	NA	NA	AT3G44220.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os12g06260.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g107350.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.205234.1.S1_s_at	A	A2TS	POPTR_0005s09050	POPTR_0005s09060 (10)//POPTR_0005s09050 (10)	scaffold_5:6352816-6361766(-) (11)//scaffold_5:6362068-6362531(-) (9)	NA	Q9FMW4	Putative GEM-like protein 8	AT5G23370.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os02g42440.1	"GEM, putative, expressed"	Medtr1g143990.1	Isopenicillin N synthetase; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205235.1.S1_at	A	A1TS	POPTR_0005s09110	POPTR_0005s09110 (11)	scaffold_5:6379534-6380023(-) (11)	NA	Q9C5D2	F-box/LRR-repeat protein 4	AT5G23340.1	RNI-like superfamily protein 	LOC_Os02g42412.1	"F-box/LRR-repeat protein 2, putative, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.205237.1.S1_at	A	A1TS	POPTR_0005s09160	POPTR_0005s09160 (10)	scaffold_5:6417300-6417601(+) (10)	NA	NA	NA	AT4G17690.1	Peroxidase superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205238.1.S1_at	A	A1TS	POPTR_0005s09170	POPTR_0005s09170 (9)	scaffold_5:6419699-6419987(+) (11)	NA	Q43731	Peroxidase 50	AT4G37520.2	Peroxidase superfamily protein 	LOC_Os03g55410.1	"peroxidase precursor, putative, expressed"	Medtr8g129440.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.205239.1.S1_at	A	A1TS	POPTR_0005s09190	POPTR_0005s09190 (11)	scaffold_5:6424213-6425544(-) (11)	NA	P22302	"Superoxide dismutase [Fe], chloroplastic (Fragment)"	AT5G23310.1	Fe superoxide dismutase 3 	LOC_Os06g05110.1	"superoxide dismutase, chloroplast, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
PtpAffx.205240.1.S1_at	A	A1TS	POPTR_0005s09200	POPTR_0005s09200 (11)	scaffold_5:6433674-6433843(+) (11)	NA	P32746	"Dihydroorotate dehydrogenase, mitochondrial"	AT5G23300.1	pyrimidine d 	LOC_Os04g57950.1	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr1g143810.1	Dihydroorotate dehydrogenase 2 	GO:0044281|small molecule metabolic process||GO:0006222|UMP biosynthetic process||GO:0055114|oxidation reduction	GO:0004152|dihydroorotate dehydrogenase activity	NA
PtpAffx.205241.1.S1_at	A	A1TS	POPTR_0005s09210	POPTR_0005s09210 (11)	scaffold_5:6441355-6441862(+) (11)	NA	Q8GYD9	Probable RNA helicase SDE3	AT1G05460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g06440.2	"RNA helicase SDE3, putative, expressed"	Medtr2g056800.1	"DEAD-like helicase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205242.1.S1_at	A	A1TS	POPTR_0005s09230	POPTR_0005s09230 (11)	scaffold_5:6447488-6448033(-) (11)	NA	Q9FYE2	Protein PHYTOCHROME KINASE SUBSTRATE 4	AT5G04190.1	phytochrome kinase substrate 4 	LOC_Os01g15990.1	expressed protein	Medtr7g105020.1	"phytochrome kinase substrate 1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205243.1.S1_at	A	A1TS	POPTR_0005s09250	POPTR_0005s09250 (10)	scaffold_5:6460797-6461217(-) (10)	NA	Q9FMX2	Transcription factor TCP7	AT5G23280.1	TCP family transcription factor  	LOC_Os12g07480.1	"TCP family transcription factor, putative, expressed"	Medtr1g143870.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205244.1.S1_at	A	A1MS	POPTR_0005s09280	POPTR_0005s09280 (11)	scaffold_5:6490511-6491012(-) (11)	NA	P0C8Q6	"Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial"	AT5G08310.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g24930.1	"PPR repeat containing protein, expressed"	Medtr1g143490.1	Catalase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205246.1.S1_at	A	A1TS	POPTR_0005s09360	POPTR_0005s09360 (11)	scaffold_5:6522241-6524736(-) (11)	NA	Q7LBC6	Lysine-specific demethylase 3B	AT1G11950.1	Transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os02g58210.2	"jmjC domain containing protein, expressed"	Medtr1g143370.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205247.1.S1_at	A	A1TS	POPTR_0005s09440	POPTR_0005s09440 (11)	scaffold_5:6576641-6577855(-) (11)	NA	Q0WPR4	Serine carboxypeptidase-like 34	AT5G23210.1	serine carboxypeptidase-like 34 	LOC_Os02g42310.1	"OsSCP8 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g100960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.205248.1.S1_at	A	A1TS	POPTR_0005s09470	POPTR_0005s09470 (11)	scaffold_5:6597337-6597904(-) (11)	NA	NA	NA	AT5G23200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g42300.1	expressed protein	Medtr4g100990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205249.1.S1_at	A	A1TS	POPTR_0005s09480	POPTR_0005s09480 (11)	scaffold_5:6604811-6605364(-) (11)	NA	NA	NA	AT5G23200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g42300.1	expressed protein	Medtr4g100990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205251.1.S1_at	A	A1TS	POPTR_0005s09510	POPTR_0005s09510 (11)	scaffold_5:6635496-6636011(+) (11)	NA	Q9FMY4	Uncharacterized protein At5g23160	AT5G08240.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23160.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205252.1.S1_at	A	A1TS	POPTR_0005s09550	POPTR_0005s09550 (11)	scaffold_5:6659478-6661513(+) (11)	NA	NA	NA	AT5G23150.1	Tudor/PWWP/MBT domain-containing protein 	LOC_Os08g01054.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g101080.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205252.1.S1_s_at	A	A1TS	POPTR_0005s09550	POPTR_0005s09550 (11)	scaffold_5:6659378-6661459(+) (11)	NA	NA	NA	AT5G23150.1	Tudor/PWWP/MBT domain-containing protein 	LOC_Os08g01054.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g101080.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205253.1.S1_at	A	A1TS	POPTR_0005s09590	POPTR_0005s09590 (11)	scaffold_5:6699292-6699789(-) (11)	NA	Q9NZJ4	Sacsin	AT5G23110.1	"Zinc finger, C3HC4 type (RING finger) family protein "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205254.1.S1_at	A	A1MS	POPTR_0005s09630	POPTR_0005s09630 (10)	scaffold_5:6734912-6736639(+) (10)	NA	Q6AZT2	Spastin	AT3G19740.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g12160.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g101160.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.205255.1.S1_at	A	A1TS	POPTR_0005s09640	POPTR_0005s09640 (11)	scaffold_5:6746425-6747006(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205256.1.S1_at	A	A1TS	POPTR_0005s09670	POPTR_0005s09670 (11)	scaffold_5:6767407-6767927(+) (11)	NA	Q9SHY2	Probable metal-nicotianamine transporter YSL7	AT1G65730.1	YELLOW STRIPE like 7 	LOC_Os04g44320.1	"transposon protein, putative, unclassified, expressed"	Medtr5g098780.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205257.1.S1_at	A	A1TS	POPTR_0005s09680	POPTR_0005s09680 (11)	scaffold_5:6777594-6779043(+) (11)	NA	P41380	Eukaryotic initiation factor 4A-3	AT3G19760.1	eukaryotic initiation factor 4A-III 	LOC_Os03g36930.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g120800.1	"Helicase, C-terminal; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205258.1.S1_at	A	A1MS	POPTR_0005s09700	POPTR_0005s09700 (11)	scaffold_5:6784868-6785249(-) (11)	NA	Q8T2I8	Serine/threonine-protein kinase sepA	AT3G13530.1	mitogen-activated protein kinase kinase kinase 7 	LOC_Os04g56530.1	"STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g100710.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205258.1.S1_s_at	A	A2TS	POPTR_0005s09680	POPTR_0005s09680 (11)//POPTR_0005s09700 (11)	scaffold_5:6777049-6777383(+) (11)//scaffold_5:6784929-6785266(-) (11)	POPTR_0007s07900 (8)	P41380	Eukaryotic initiation factor 4A-3	AT3G19760.1	eukaryotic initiation factor 4A-III 	LOC_Os03g36930.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g120800.1	"Helicase, C-terminal; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205259.1.S1_at	A	A1TS	POPTR_0005s09700	POPTR_0005s09700 (11)	scaffold_5:6785588-6786057(-) (11)	NA	Q8T2I8	Serine/threonine-protein kinase sepA	AT3G13530.1	mitogen-activated protein kinase kinase kinase 7 	LOC_Os04g56530.1	"STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g100710.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205260.1.S1_at	A	A2TS	POPTR_0005s09700	POPTR_0005s09700 (11)//POPTR_0007s07900 (9)	scaffold_5:6787719-6787875(-) (11)//scaffold_7:6383811-6383967(+) (9)	NA	Q8T2I8	Serine/threonine-protein kinase sepA	AT3G13530.1	mitogen-activated protein kinase kinase kinase 7 	LOC_Os04g56530.1	"STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g100710.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205261.1.S1_at	A	A1TS	POPTR_0005s09700	POPTR_0005s09700 (11)	scaffold_5:6788696-6788958(-) (11)	NA	Q8T2I8	Serine/threonine-protein kinase sepA	AT3G13530.1	mitogen-activated protein kinase kinase kinase 7 	LOC_Os04g56530.1	"STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g100710.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205262.1.S1_s_at	A	A1TS	POPTR_0005s09750	POPTR_0005s09750 (11)	scaffold_5:6841758-6841991(+) (11)	NA	NA	NA	AT3G19800.1	Protein of unknown function (DUF177) 	LOC_Os04g44340.1	expressed protein	Medtr4g101400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205263.1.S1_at	A	A1TS	POPTR_0005s09770	POPTR_0005s09770 (11)	scaffold_5:6846668-6847202(-) (11)	NA	Q8LCG7	Nuclear transcription factor Y subunit C-2	AT1G56170.2	"nuclear factor Y, subunit C2 "	LOC_Os02g07450.2	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr7g139450.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.205263.1.S1_x_at	A	A1TS	POPTR_0005s09770	POPTR_0005s09770 (11)	scaffold_5:6846668-6847260(-) (11)	NA	Q8LCG7	Nuclear transcription factor Y subunit C-2	AT1G56170.2	"nuclear factor Y, subunit C2 "	LOC_Os02g07450.2	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr7g139450.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.205264.1.S1_at	A	A1TS	POPTR_0005s09790	POPTR_0005s09790 (11)	scaffold_5:6859744-6860303(+) (11)	NA	Q9C8Y3	DELLA protein RGL1	AT1G66350.1	RGA-like 1 	LOC_Os01g67650.1	"gibberellin response modulator protein, putative"	Medtr8g109760.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205265.1.S1_at	A	A1TS	POPTR_0005s09800	POPTR_0005s09800 (10)	scaffold_5:6863808-6864275(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G79570.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os07g25680.1	"protein kinase domain containing protein, expressed"	Medtr1g111680.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205266.1.S1_at	A	A1TS	POPTR_0005s09810	POPTR_0005s09810 (11)	scaffold_5:6886935-6888455(+) (11)	NA	Q9T072	Transcription factor bHLH25	AT4G37850.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g51580.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g010480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.205267.1.S1_at	A	A1TS	POPTR_0005s09850	POPTR_0005s09850 (11)	scaffold_5:6930870-6931109(-) (11)	NA	NA	NA	AT1G79200.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g07420.1	"splicing factor, arginine/serine-rich 12, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205268.1.S1_s_at	A	A1TS	POPTR_0005s09870	POPTR_0005s09870 (11)	scaffold_5:6959292-6960051(+) (11)	NA	O22397	Potassium transporter 1	AT2G30070.1	potassium transporter 1 	LOC_Os06g45940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.205269.1.S1_at	A	A1TS	POPTR_0005s09880	POPTR_0005s09880 (11)	scaffold_5:6975099-6975384(+) (11)	NA	NA	NA	AT3G12870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g56700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205270.1.S1_at	A	A1TS	POPTR_0005s09900	POPTR_0005s09900 (11)	scaffold_5:6984395-6984868(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205271.1.S1_s_at	A	A1TS	POPTR_0005s09920	POPTR_0005s09920 (11)	scaffold_5:7011738-7011959(+) (11)	NA	NA	NA	AT3G12830.1	SAUR-like auxin-responsive protein family  	LOC_Os03g45800.1	OsSAUR14 - Auxin-responsive SAUR gene family member	Medtr3g133040.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205272.1.S1_at	A	A1TS	POPTR_0005s09930	POPTR_0005s09930 (10)	scaffold_5:7036804-7037268(-) (10)	NA	P20024	Myb-related protein Zm1	AT1G79180.1	myb domain protein 63 	LOC_Os02g46780.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205274.1.S1_at	A	A1MS	POPTR_0005s09970	POPTR_0005s09970 (9)	scaffold_5:7071977-7072380(+) (10)	NA	Q6DRN3	Nucleolar complex protein 3 homolog	AT1G79150.1	binding 	LOC_Os06g30320.1	"NOC3 - Putative nucleolar complex subunit 3, expressed"	Medtr7g076380.1	CBF; Nucleolar complex-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205275.1.S1_at	A	A1TS	POPTR_0005s09980	POPTR_0005s09980 (9)	scaffold_5:7078228-7079778(-) (11)	NA	Q7G764	Probable NAD(P)H-dependent oxidoreductase 1	AT1G59960.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g37480.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g097740.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.205276.1.S1_at	A	A1MS	POPTR_0005s09990	POPTR_0005s09990 (9)	scaffold_5:7085115-7087523(+) (10)	NA	Q9CAN0	"Pentatricopeptide repeat-containing protein At1g63130, mitochondrial"	AT1G63130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g05920.1	"Rf1, mitochondrial precursor, putative, expressed"	Medtr6g089560.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205277.1.S1_at	A	A1TS	POPTR_0005s10000	POPTR_0005s10000 (11)	scaffold_5:7091905-7093297(+) (11)	NA	Q32PZ3	Protein unc-45 homolog A	AT1G56090.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g52580.1	tetratricopeptide repeat domain containing protein	Medtr7g065330.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205278.1.S1_at	A	A1TS	POPTR_0005s10010	POPTR_0005s10010 (11)	scaffold_5:7102489-7103050(+) (11)	NA	Q9FKE6	Cyclin-T1-5	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205279.1.S1_s_at	A	A1MS	POPTR_0005s10020	POPTR_0005s10020 (11)	scaffold_5:7106929-7107753(-) (11)	NA	P0C1I6	Peptidyl-prolyl cis-trans isomerase-like 4	AT1G53720.1	cyclophilin 59 	LOC_Os06g45910.1	"peptidyl-prolyl cis-trans isomerase-like 4, putative, expressed"	Medtr6g028110.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type; Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205280.1.S1_at	A	A1TS	POPTR_0005s10040	POPTR_0005s10040 (11)	scaffold_5:7128200-7129217(+) (11)	NA	NA	NA	AT3G12890.1	activator of spomin::LUC2 	LOC_Os03g04620.1	"CCT motif family protein, expressed"	Medtr2g087960.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205281.1.S1_at	A	A1TS	POPTR_0005s10070	POPTR_0005s10070 (11)	scaffold_5:7173329-7174101(+) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT3G12900.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr2g088040.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.205282.1.S1_at	A	A1TS	POPTR_0005s10090	POPTR_0005s10090 (11)	scaffold_5:7191383-7191667(+) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os04g02820.2	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.205283.1.S1_at	A	A1TS	POPTR_0005s10110	POPTR_0005s10110 (11)	scaffold_5:7222361-7223136(-) (11)	NA	NA	NA	AT1G79060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 3399 Blast hits to 980 proteins in 195 species: Archae - 0; Bacteria - 839; Metazoa - 390; Fungi - 256; Plants - 154; Viruses - 9; Other Eukaryotes - 1751 (source: NCBI BLink). 	LOC_Os06g46250.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205284.1.S1_at	A	A1TS	POPTR_0005s10120	POPTR_0005s10120 (11)	scaffold_5:7226536-7227244(-) (11)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT2G36650.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g09380.3	"AR791, putative, expressed"	Medtr1g073900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205285.1.S1_at	A	A1TS	POPTR_0005s10140	POPTR_0005s10140 (11)	scaffold_5:7249092-7249707(+) (11)	NA	Q9V780	Protein lap1	AT4G35470.1	plant intracellular ras group-related LRR 4 	LOC_Os08g40090.1	"leucine rich repeat containing protein, expressed"	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.205286.1.S1_at	A	A1TS	POPTR_0005s10170	POPTR_0005s10170 (11)	scaffold_5:7263043-7263912(-) (11)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT2G17270.1	phosphate transporter 3;3 	LOC_Os09g38100.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr5g024710.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205287.1.S1_at	A	A1TS	POPTR_0005s10180	POPTR_0005s10180 (11)	scaffold_5:7272151-7272710(+) (11)	NA	Q9SD00	Monosaccharide-sensing protein 3	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os02g13560.4	"transporter family protein, putative, expressed"	Medtr3g164110.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.205288.1.S1_at	A	A1TS	POPTR_0005s10270	POPTR_0005s10270 (11)	scaffold_5:7357699-7358451(+) (11)	NA	Q8W2B8	Serine acetyltransferase 4	AT4G35640.1	serine acetyltransferase 3;2 	LOC_Os03g04140.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g023630.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
PtpAffx.205288.1.S1_x_at	A	A1TS	POPTR_0005s10270	POPTR_0005s10270 (11)	scaffold_5:7356935-7358448(+) (11)	NA	Q8W2B8	Serine acetyltransferase 4	AT4G35640.1	serine acetyltransferase 3;2 	LOC_Os03g04140.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g023630.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
PtpAffx.205289.1.S1_at	A	A1TS	POPTR_0005s10280	POPTR_0005s10280 (11)	scaffold_5:7366045-7367769(+) (11)	NA	Q8S2T0	Protein GRIP	AT5G66030.1	Golgi-localized GRIP domain-containing protein 	LOC_Os07g28940.1	"ATGRIP/GRIP, putative, expressed"	Medtr5g023640.1	"ATGRIP/GRIP; protein binding, putative "	GO:0016032|viral reproduction	NA	GO:0016020|membrane
PtpAffx.205290.1.S1_at	A	A1TS	POPTR_0005s10310	POPTR_0005s10310 (11)	scaffold_5:7381927-7385297(-) (11)	NA	P44439	Probable poly(A) polymerase	AT2G17580.1	Polynucleotide adenylyltransferase family protein 	LOC_Os03g03930.1	"tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed"	Medtr5g023710.1	Polynucleotide adenylyltransferase region 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0016779|nucleotidyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.205291.1.S1_at	A	A1TS	POPTR_0005s10330	POPTR_0005s10330 (11)	scaffold_5:7406908-7407415(+) (11)	NA	NA	NA	AT4G35700.1	zinc finger (C2H2 type) family protein 	NA	NA	Medtr5g023800.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205293.1.S1_at	A	A1TS	POPTR_0005s10360	POPTR_0005s10360 (11)	scaffold_5:7434866-7435188(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g65700.1	expressed protein	Medtr8g087970.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205294.1.S1_at	A	A1TS	POPTR_0005s10380	POPTR_0005s10380 (10)	scaffold_5:7446367-7447174(-) (10)	NA	Q8S2T1	Dehydrodolichyl diphosphate synthase 6	AT2G17570.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os06g07120.1	"dehydrodolichyl diphosphate synthase, putative, expressed"	Medtr1g121440.1	Di-trans-poly-cis-decaprenylcistransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
PtpAffx.205295.1.S1_at	A	A1TS	POPTR_0005s10400	POPTR_0005s10400 (11)	scaffold_5:7462895-7464033(-) (11)	NA	O81791	Protein RKD5	AT4G35590.1	RWP-RK domain-containing protein 	LOC_Os04g47640.1	"RWP-RK domain-containing protein, putative, expressed"	Medtr5g023980.1	Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205296.1.S1_at	A	A1TS	POPTR_0005s10410	POPTR_0005s10410 (11)	scaffold_5:7472523-7473360(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g024130.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205297.1.S1_at	A	A1TS	POPTR_0005s10460	POPTR_0005s10460 (11)	scaffold_5:7503927-7505731(-) (11)	NA	Q9WU70	Syntaxin-binding protein 5	AT4G35560.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g47700.1	expressed protein	Medtr5g024200.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205298.1.S1_at	A	A1TS	POPTR_0005s10470	POPTR_0005s10470 (11)	scaffold_5:7522989-7523123(+) (11)	NA	NA	NA	AT2G17550.1	unknown protein; Has 264 Blast hits to 258 proteins in 65 species: Archae - 5; Bacteria - 5; Metazoa - 66; Fungi - 16; Plants - 107; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os03g03860.3	expressed protein	Medtr5g024230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205299.1.S1_at	A	A1TS	POPTR_0005s10520	POPTR_0005s10520 (11)	scaffold_5:7572223-7574173(+) (11)	NA	Q9HGL2	Uncharacterized calcium-binding protein C800.10c	AT1G21630.1	Calcium-binding EF hand family protein 	LOC_Os06g51250.1	"EF hand family protein, putative, expressed"	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205300.1.S1_at	A	A1TS	POPTR_0005s10530	POPTR_0005s10530 (11)	scaffold_5:7580499-7581066(-) (11)	NA	Q495N2	Proton-coupled amino acid transporter 3	AT4G38250.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47780.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g024300.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205301.1.S1_at	A	A1TS	POPTR_0005s10540	POPTR_0005s10540 (11)	scaffold_5:7583020-7583581(-) (11)	NA	Q84VG6	"Pentatricopeptide repeat-containing protein At2g17525, mitochondrial"	AT2G17525.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g01130.1	"pentatricopeptide containing protein, putative, expressed"	Medtr5g024320.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205302.1.S1_at	A	A1TS	POPTR_0005s10550	POPTR_0005s10550 (11)	scaffold_5:7587420-7588008(-) (11)	NA	Q9SD02	Probable protein phosphatase 2C 47	AT3G51470.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr5g024330.1	Protein phosphatase 2C; C-type lectin; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205304.1.S1_at	A	A1TS	POPTR_0005s10560	POPTR_0005s10560 (11)	scaffold_5:7599313-7599840(+) (11)	NA	Q84W41	Glutamate receptor 3.6	AT3G51480.1	glutamate receptor 3.6 	LOC_Os02g02540.1	"glutamate receptor, putative, expressed"	Medtr8g087890.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.205305.1.S1_at	A	A1TS	POPTR_0005s10580	POPTR_0005s10580 (11)	scaffold_5:7612097-7613630(-) (11)	NA	NA	NA	AT4G38380.1	MATE efflux family protein 	LOC_Os09g37610.1	"MATE efflux protein, putative, expressed"	Medtr5g106650.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.205306.1.S1_at	A	A1TS	POPTR_0005s10590	POPTR_0005s10590 (11)	scaffold_5:7625292-7625846(-) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g023600.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.205307.1.S1_at	A	A1TS	POPTR_0005s10620	POPTR_0005s10620 (11)	scaffold_5:7648130-7648674(+) (11)	NA	Q84J71	Pentatricopeptide repeat-containing protein At2g17670	AT2G17670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g02740.3	"PPR repeat containing protein, expressed"	Medtr8g005650.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205308.1.S1_at	A	A2TS	POPTR_0005s10630	POPTR_0579s00210 (11)//POPTR_0005s10630 (11)	scaffold_5:7653326-7653772(+) (11)//scaffold_579:11011-11457(-) (11)	NA	NA	NA	AT4G35690.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43870.1	"carrier, putative"	Medtr5g023500.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205309.1.S1_at	A	A2TS	POPTR_0005s10640	POPTR_0579s00200 (11)//POPTR_0005s10640 (11)	scaffold_5:7655775-7657119(+) (11)//scaffold_579:7658-9008(-) (11)	NA	NA	NA	AT3G51020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66370.1); Has 19 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g133410.1	Heavy metal transport/detoxification protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205311.1.S1_at	A	A1TS	POPTR_0005s10650	POPTR_0005s10650 (11)	scaffold_5:7662849-7663103(+) (11)	NA	NA	NA	AT4G35690.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43970.1	"carrier, putative"	Medtr8g088740.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205311.1.S1_s_at	A	A1TS	POPTR_0005s10650	POPTR_0005s10650 (11)	scaffold_5:7663237-7663421(+) (11)	NA	NA	NA	AT4G35690.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43970.1	"carrier, putative"	Medtr8g088740.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205312.1.S1_s_at	A	A1TS	POPTR_0005s10660	POPTR_0005s10660 (11)	scaffold_5:7666467-7667044(+) (11)	NA	NA	NA	AT4G35690.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43970.1	"carrier, putative"	Medtr8g088740.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205313.1.S1_at	A	A1TS	POPTR_0005s13020	POPTR_0005s13020 (11)	scaffold_5:9839642-9848250(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205315.1.S1_at	A	A1TS	POPTR_0005s13810	POPTR_0005s13810 (11)	scaffold_5:10811089-10811494(-) (11)	NA	O64827	Histone-lysine N-methyltransferase SUVR5	AT2G23740.2	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding 	LOC_Os02g47900.1	"SET domain protein SDG117, putative, expressed"	Medtr5g018800.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.205316.1.S1_at	A	A1TS	POPTR_0005s13810	POPTR_0005s13810 (11)	scaffold_5:10812728-10813252(-) (11)	NA	O64827	Histone-lysine N-methyltransferase SUVR5	AT2G23740.2	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding 	LOC_Os02g47900.1	"SET domain protein SDG117, putative, expressed"	Medtr5g018800.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.205317.1.S1_at	A	A1TS	POPTR_0005s13820	POPTR_0005s13820 (11)	scaffold_5:10835910-10837245(+) (11)	NA	NA	NA	AT5G66600.3	"Protein of unknown function, DUF547 "	LOC_Os03g55890.1	"ternary complex factor MIP1, putative, expressed"	AC233653_9.1	Protein of unknown function DUF547 AC233653.2 46326-50755 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205318.1.S1_at	A	A1TS	POPTR_0005s13850	POPTR_0005s13850 (9)	scaffold_5:10846405-10847804(-) (9)	NA	NA	NA	AT1G32700.1	PLATZ transcription factor family protein 	LOC_Os08g44620.1	"zinc-binding protein, putative, expressed"	Medtr1g074250.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.205319.1.S1_at	A	A1MS	POPTR_0005s13870	POPTR_0005s13870 (10)	scaffold_5:10854925-10855386(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205320.1.S1_at	A	A1TS	POPTR_0005s13890	POPTR_0005s13890 (11)	scaffold_5:10883683-10884495(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT5G66560.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g55830.1	"BTBN10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	AC157372_1.1	BTB/POZ; NPH3 AC157372.2 9592-12375 E EGN_Mt090430 200	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.205321.1.S1_at	A	A1TS	POPTR_0005s13920	POPTR_0005s13920 (11)	scaffold_5:10905515-10905844(-) (11)	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205322.1.S1_at	A	A1TS	POPTR_0005s13940	POPTR_0005s13940 (11)	scaffold_5:10951271-10951830(+) (11)	NA	Q8YRI1	Uncharacterized WD repeat-containing protein alr3466	AT3G50390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52870.1	"WD-40 repeat family protein, putative, expressed"	Medtr5g018560.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205323.1.S1_at	A	A1TS	POPTR_0005s13960	POPTR_0005s13960 (11)	scaffold_5:10971776-10972320(-) (11)	NA	Q8LGM7	Molybdenum cofactor sulfurase	AT2G23520.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g55704.1	expressed protein	Medtr1g129690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205324.1.S1_at	A	A1TS	POPTR_0005s13970	POPTR_0005s13970 (11)	scaffold_5:10985236-10985823(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205325.1.S1_at	A	A1TS	POPTR_0005s13980	POPTR_0005s13980 (11)	scaffold_5:10991381-10992548(-) (11)	NA	NA	NA	AT5G60150.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g01220.1	expressed protein	Medtr4g080120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205326.1.S1_at	A	A1MS	POPTR_0005s14000	POPTR_0005s14000 (10)	scaffold_5:11023756-11024501(+) (10)	NA	Q02439	"Putative glucan endo-1,3-beta-glucosidase GVI (Fragment)"	AT4G16260.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g58730.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr7g092900.1	"Glycoside hydrolase, family 17 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205327.1.S1_at	A	A1TS	POPTR_0005s14010	POPTR_0005s14010 (11)	scaffold_5:11025531-11026113(-) (11)	NA	Q9SCT2	Pentatricopeptide repeat-containing protein At3g50420	AT3G50420.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g57670.1	"pentatricopeptide, putative, expressed"	Medtr5g018430.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205328.1.S1_at	A	A1TS	POPTR_0005s14020	POPTR_0005s14020 (11)	scaffold_5:11039123-11040967(+) (11)	NA	NA	NA	AT3G50430.1	unknown protein; Has 54 Blast hits to 54 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os07g02950.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205330.1.S1_at	A	A1TS	POPTR_0005s14060	POPTR_0005s14060 (11)	scaffold_5:11101313-11101349(-) (11)	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23620.1	methyl esterase 1 	LOC_Os01g57770.1	"OsPOP4 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g018420.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205330.1.S1_s_at	A	A2TS	POPTR_0005s14060	POPTR_0005s14060 (11)//POPTR_0011s02440 (11)	scaffold_11:2332394-2333202(+) (11)//scaffold_5:11101336-11102128(-) (11)	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23620.1	methyl esterase 1 	LOC_Os01g57770.1	"OsPOP4 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g018420.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205331.1.S1_at	A	A1TS	POPTR_0005s14070	POPTR_0005s14070 (11)	scaffold_5:11116276-11116458(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205333.1.S1_at	A	A1TS	POPTR_0005s14100	POPTR_0005s14100 (11)	scaffold_5:11161957-11165324(-) (11)	NA	Q39193	Serine/threonine-protein kinase SRK2I	AT5G66880.1	sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 	LOC_Os03g41460.1	"CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g096830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205334.1.S1_at	A	A1TS	POPTR_0005s14110	POPTR_0005s14110 (11)	scaffold_5:11183569-11184601(+) (11)	NA	Q08747	Upstream activation factor subunit UAF30	AT1G49520.1	SWIB complex BAF60b domain-containing protein 	LOC_Os08g39310.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g017990.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205335.1.S1_at	A	A1TS	POPTR_0005s14130	POPTR_0005s14130 (11)	scaffold_5:11210286-11210395(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205335.1.S1_x_at	A	A1TS	POPTR_0005s14130	POPTR_0005s14130 (11)	scaffold_5:11210286-11210540(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205336.1.S1_at	A	A1TS	POPTR_0005s14135	POPTR_0005s14135 (11)	scaffold_5:11214329-11214862(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205337.1.S1_at	A	A1TS	POPTR_0005s14140	POPTR_0005s14140 (10)	scaffold_5:11221888-11222353(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205339.1.S1_s_at	A	A1MS	POPTR_0005s14170	POPTR_0005s14170 (11)	scaffold_5:11283997-11284778(+) (11)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT5G66850.1	mitogen-activated protein kinase kinase kinase 5 	LOC_Os07g02780.1	"STE_MEKK_ste11_MAP3K.20 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205340.1.S1_at	A	A1TS	POPTR_0005s14180	POPTR_0005s14180 (11)	scaffold_5:11289364-11289887(+) (11)	NA	O60188	U3 small nucleolar RNA-associated protein 6	AT4G28200.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). "	LOC_Os02g01350.1	expressed protein	Medtr8g147010.1	Ribosomal protein L29 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205341.1.S1_at	A	A1TS	POPTR_0005s14210	POPTR_0005s14210 (11)	scaffold_5:11322771-11324493(+) (11)	NA	Q9C566	Peptidyl-prolyl cis-trans isomerase CYP40	AT2G15790.1	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase 	LOC_Os06g11320.2	"peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed"	Medtr4g129080.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.205342.1.S1_at	A	A1MS	POPTR_0005s14230	POPTR_0005s14230 (11)	scaffold_5:11335052-11335616(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g42790.1	"caltractin, putative"	Medtr8g096940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205343.1.S1_at	A	A1TS	POPTR_0005s14260	POPTR_0005s14260 (11)	scaffold_5:11362234-11362735(+) (11)	NA	Q338N2	Zinc finger CCCH domain-containing protein 62	AT5G66840.1	SAP domain-containing protein 	LOC_Os07g42760.1	expressed protein	Medtr5g017810.1	DNA-binding SAP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.205344.1.S1_at	A	A1TS	POPTR_0005s18000	POPTR_0005s18000 (11)	scaffold_5:15920798-15921664(-) (11)	NA	NA	NA	AT4G37080.3	"Protein of unknown function, DUF547 "	LOC_Os09g28850.3	expressed protein	Medtr5g017780.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205345.1.S1_at	A	A1TS	POPTR_0005s18010	POPTR_0005s18010 (11)	scaffold_5:15939004-15939532(-) (11)	NA	Q3U3D7	Transmembrane protein 131-like	AT5G66820.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g08740.1	expressed protein	Medtr5g017760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205346.1.S1_a_at	A	A1TS	POPTR_0005s18020	POPTR_0005s18020 (11)	scaffold_5:15993966-15994070(-) (11)//scaffold_5:15994086-15994190(-) (11)	NA	NA	NA	AT3G50610.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g27680.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205346.1.S1_at	A	A1TS	POPTR_0005s18020	POPTR_0005s18020 (9)	scaffold_5:15993686-15994255(-) (9)	NA	NA	NA	AT3G50610.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g27680.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205347.1.S1_at	A	A1TS	POPTR_0005s18030	POPTR_0005s18030 (11)	scaffold_5:16034773-16035026(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205348.1.S1_at	A	A1TS	POPTR_0005s18040	POPTR_0005s18040 (11)	scaffold_5:16047800-16048593(-) (11)	NA	NA	NA	AT3G50620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr5g017700.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205349.1.S1_at	A	A1TS	POPTR_0005s18060	POPTR_0005s18060 (10)	scaffold_5:16064905-16067313(-) (11)	NA	NA	NA	AT5G66810.1	"CONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). "	LOC_Os10g24070.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205350.1.S1_at	A	A1TS	POPTR_0005s18070	POPTR_0005s18070 (11)	scaffold_5:16092865-16096417(+) (11)	NA	Q9FV50	"Methionine aminopeptidase 1D, chloroplastic/mitochondrial"	AT4G37040.1	methionine aminopeptidase 1D 	LOC_Os02g52420.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g017630.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.205351.1.S1_at	A	A1TS	POPTR_0005s18110	POPTR_0005s18110 (11)	scaffold_5:16180036-16180518(-) (11)	NA	Q9FNN9	Putative pentatricopeptide repeat-containing protein At5g08490	AT5G08490.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g20870.1	"pentatricopeptide repeat protein PPR1106-17, putative, expressed"	Medtr3g151720.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205352.1.S1_at	A	A1TS	POPTR_0005s18160	POPTR_0005s18160 (11)	scaffold_5:16262634-16263290(-) (11)	NA	O81360	"Zeaxanthin epoxidase, chloroplastic"	AT5G67030.1	zeaxanthin epoxidase (ZEP) (ABA1) 	LOC_Os04g37619.1	"zeaxanthin epoxidase, chloroplast precursor, putative, expressed"	CU571152_22.1	Forkhead-associated CU571152.5 100554-94827 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205353.1.S1_at	A	A1TS	POPTR_0005s18170	POPTR_0005s18170 (11)	scaffold_5:16282357-16283375(+) (11)	NA	NA	NA	AT4G36970.1	Remorin family protein 	LOC_Os02g52810.2	"remorin C-terminal domain containing protein, putative, expressed"	CU571152_24.1	"Remorin, C-terminal region CU571152.5 111557-113744 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205354.1.S1_at	A	A1TS	POPTR_0005s18200	POPTR_0005s18200 (11)	scaffold_5:16298959-16299920(-) (11)	NA	NA	NA	AT5G42930.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr5g017200.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.205355.1.S1_at	A	A1TS	POPTR_0005s18210	POPTR_0005s18210 (11)	scaffold_5:16313893-16314486(-) (11)	NA	Q9FHA7	Transcription factor HEC1	AT5G67060.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g28210.1	"bHelix-loop-helix transcription factor, putative, expressed"	Medtr5g017180.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.205356.1.S1_at	A	A1TS	POPTR_0005s18230	POPTR_0005s18230 (11)	scaffold_5:16355897-16356427(+) (11)	NA	O22042	Mitogen-activated protein kinase kinase kinase 3	AT5G67080.1	mitogen-activated protein kinase kinase kinase 19 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205357.1.S1_at	A	A1TS	POPTR_0005s18260	POPTR_0005s18260 (9)	scaffold_5:16390752-16392018(-) (11)	NA	Q3EDL4	Probable serine/threonine-protein kinase At1g01540	AT1G01540.2	Protein kinase superfamily protein 	LOC_Os05g36050.1	"serine/threonine-protein kinase, putative, expressed"	Medtr5g017030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205358.1.S1_at	A	A1TS	POPTR_0005s18270	POPTR_0005s18270 (11)	scaffold_5:16415854-16416284(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205359.1.S1_at	A	A1TS	POPTR_0005s18280	POPTR_0005s18280 (11)	scaffold_5:16419319-16420574(+) (11)	NA	Q9FUA4	Transcription factor SPATULA	AT4G36930.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g56140.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr5g016950.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.205360.1.S1_at	A	A1TS	POPTR_0005s18290	POPTR_0005s18290 (11)	scaffold_5:16422723-16423770(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g016950.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205361.1.S1_at	A	A1TS	POPTR_0005s18310	POPTR_0005s18310 (11)	scaffold_5:16459683-16461701(-) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT4G34040.1	RING/U-box superfamily protein 	LOC_Os04g55510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g024190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205364.1.S1_at	A	A1TS	POPTR_0005s18370	POPTR_0005s18370 (11)	scaffold_5:16517269-16517796(-) (11)	NA	Q91DM0	Genome polyprotein	AT1G37113.1	unknown protein; LOCATED IN: chloroplast; Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 14; Viruses - 6; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g15720.1	tobamovirus movement protein containing protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205366.1.S1_at	A	A1TS	POPTR_0005s18390	POPTR_0005s18390 (11)	scaffold_5:16558745-16560320(+) (11)	NA	Q5T2D3	OTU domain-containing protein 3	AT5G67170.1	SEC-C motif-containing protein / OTU-like cysteine protease family protein 	LOC_Os04g57480.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr2g107500.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205366.1.S1_s_at	A	A1TS	POPTR_0005s18390	POPTR_0005s18390 (11)	scaffold_5:16558777-16560819(+) (11)	NA	Q5T2D3	OTU domain-containing protein 3	AT5G67170.1	SEC-C motif-containing protein / OTU-like cysteine protease family protein 	LOC_Os04g57480.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr2g107500.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205367.1.S1_at	A	A1TS	POPTR_0005s18480	POPTR_0005s18480 (11)	scaffold_5:16719772-16721562(+) (11)	NA	NA	NA	AT5G67210.1	Protein of unknown function (DUF579) 	LOC_Os06g47310.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr4g130370.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205368.1.S1_at	A	A1MS	POPTR_0005s18490	POPTR_0005s18490 (9)	scaffold_5:16729722-16729756(-) (9)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.205370.1.S1_at	A	A1TS	POPTR_0005s18560	POPTR_0005s18560 (11)	scaffold_5:16804799-16805207(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205371.1.S1_at	A	A1TS	POPTR_0005s18620	POPTR_0005s18620 (11)	scaffold_5:16899746-16900272(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr5g016440.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205372.1.S1_at	A	A1TS	POPTR_0005s18670	POPTR_0005s18670 (11)	scaffold_5:16926577-16926740(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205374.1.S1_at	A	A2TS	POPTR_0005s13320	POPTR_0005s13320 (11)//POPTR_0005s18750 (11)	scaffold_5:10480485-10480528(-) (11)//scaffold_5:17041456-17041499(+) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205374.1.S1_x_at	A	A2TS	POPTR_0005s13320	POPTR_0005s13320 (11)//POPTR_0005s18750 (10)	scaffold_5:10480450-10480918(-) (11)//scaffold_5:17041099-17046826(+) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205375.1.S1_at	A	A1TS	POPTR_0005s13330	POPTR_0005s13330 (11)	scaffold_5:10491598-10491676(-) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205375.1.S1_x_at	A	A1TS	POPTR_0005s13330	POPTR_0005s13330 (11)	scaffold_5:10491598-10492165(-) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205377.1.S1_at	A	A1TS	POPTR_0005s18720	POPTR_0005s18720 (11)	scaffold_5:16984163-16984427(+) (11)	NA	Q9FG65	Cytochrome P450 81D1	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.205379.1.S1_s_at	A	A2TS	POPTR_0005s13320	POPTR_0005s13320 (11)//POPTR_0005s18760 (11)	scaffold_5:10480857-10481033(-) (11)//scaffold_5:17040948-17046826(+) (11)	POPTR_0005s18750 (8)	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205380.1.S1_at	A	A1TS	POPTR_0005s18800	POPTR_0005s18800 (11)	scaffold_5:17106092-17106608(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205381.1.S1_at	A	A1TS	POPTR_0005s18810	POPTR_0005s18810 (11)	scaffold_5:17115102-17116344(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G43100.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g40260.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr5g016240.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205382.1.S1_at	A	A1TS	POPTR_0005s18820	POPTR_0005s18820 (11)	scaffold_5:17131966-17132517(+) (11)	NA	O22193	U-box domain-containing protein 4	AT2G23140.1	RING/U-box superfamily protein with ARM repeat domain 	LOC_Os08g01900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.205383.1.S1_at	A	A1TS	POPTR_0005s18860	POPTR_0005s18860 (11)	scaffold_5:17259046-17259349(-) (11)	NA	NA	NA	AT5G67350.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr8g099220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205384.1.S1_at	A	A1TS	POPTR_0005s18920	POPTR_0005s18920 (11)	scaffold_5:17357909-17358374(+) (11)	NA	Q9SN22	Scarecrow-like protein 32	AT3G49950.1	GRAS family transcription factor 	LOC_Os07g40020.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr8g099430.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205385.1.S1_at	A	A1MS	POPTR_0005s18930	POPTR_0005s18930 (11)	scaffold_18:10838749-10839819(+) (9)//scaffold_5:17375938-17377008(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	GO:0006810|transport	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205386.1.S1_at	A	A2TS	POPTR_0007s07695	POPTR_0007s07695 (9)//POPTR_0012s05300 (9)	scaffold_11:3231730-3231767(+) (9)//scaffold_12:4889131-4889168(-) (9)//scaffold_17:6988488-6988525(+) (9)//scaffold_17:10641338-10641375(-) (9)//scaffold_18:10838205-10838242(+) (9)//scaffold_35:15116-15153(-) (9)//scaffold_5:17377840-17377961(-) (11)//scaffold_7:6081617-6081654(+) (9)	NA	NA	NA	NA	NA	LOC_Os10g16870.1	zinc knuckle family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205386.1.S1_s_at	A	A4TS	POPTR_0003s02860	POPTR_0005s19240 (11)//POPTR_0005s18930 (11)//POPTR_0003s02860 (11)//POPTR_0017s08443 (9)	scaffold_17:6986381-6988487(+) (9)//scaffold_3:2992000-2992274(+) (11)//scaffold_3:3002320-3002594(+) (11)//scaffold_5:17377878-17378152(-) (11)//scaffold_5:17961096-17961370(-) (11)	POPTR_0012s05300 (8)	NA	NA	NA	NA	LOC_Os10g16870.1	zinc knuckle family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205387.1.S1_at	A	A1MS	POPTR_0005s18930	POPTR_0005s18930 (11)	scaffold_5:17378503-17378940(-) (11)	POPTR_0012s05300 (7)//POPTR_0008s22490 (7)	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	GO:0006810|transport	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205388.1.S1_at	A	A1TS	POPTR_0005s18990	POPTR_0005s18990 (10)	scaffold_16:8837897-8838670(+) (9)//scaffold_5:17558013-17558781(+) (10)	POPTR_0002s21590 (7)//POPTR_0646s00210 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205390.1.S1_at	A	A1TS	POPTR_0005s19030	POPTR_0005s19030 (10)	scaffold_5:17619948-17621576(+) (10)	NA	NA	NA	AT4G07990.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g51830.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.205391.1.S1_at	A	A1TS	POPTR_0005s19040	POPTR_0005s19040 (11)	scaffold_5:17625089-17625971(-) (11)	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.2	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.205392.1.S1_at	A	A1TS	POPTR_0005s19060	POPTR_0005s19060 (11)	scaffold_5:17650472-17650887(-) (11)	NA	Q9ZQB9	Probable xyloglucan glycosyltransferase 12	AT4G07960.1	Cellulose-synthase-like C12 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205393.1.S1_at	A	A1MS	POPTR_0005s19070	POPTR_0005s19070 (11)	scaffold_5:17679281-17679819(+) (11)	NA	O81108	"Calcium-transporting ATPase 2, plasma membrane-type"	AT4G37640.1	calcium ATPase 2 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr5g015700.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.205394.1.S1_at	A	A1TS	POPTR_0005s19100	POPTR_0005s19100 (10)	scaffold_5:17721035-17721553(+) (11)	NA	NA	NA	AT2G22560.1	Kinase interacting (KIP1-like) family protein 	LOC_Os05g02790.1	"KIP1, putative, expressed"	Medtr5g075300.1	KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205395.1.S1_at	A	A1TS	POPTR_0005s19130	POPTR_0005s19130 (11)	scaffold_5:17741080-17743211(-) (11)	NA	P94538	Uncharacterized tRNA/rRNA methyltransferase YsgA	AT4G38020.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os03g48050.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr8g079220.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.205397.1.S1_at	A	A1MS	POPTR_0005s19150	POPTR_0005s19150 (10)	scaffold_5:17757880-17758458(-) (10)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.1	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g009860.1	Methylmalonate-semialdehyde dehydrogenase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205398.1.S1_at	A	A1TS	POPTR_0005s19160	POPTR_0005s19160 (11)	scaffold_5:17773286-17774585(+) (11)	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G38100.1	unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g11400.1	expressed protein	Medtr5g033900.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205399.1.S1_s_at	A	A1TS	POPTR_0005s19170	POPTR_0005s19170 (11)	scaffold_5:17788916-17789304(+) (11)	NA	P22036	"Magnesium-transporting ATPase, P-type 1"	AT1G07670.1	endomembrane-type CA-ATPase 4 	LOC_Os03g08560.1	"plasma membrane ATPase, putative, expressed"	Medtr5g015700.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.205401.1.S1_at	A	A1TS	POPTR_0005s19220	POPTR_0005s19220 (9)	scaffold_5:17895801-17895973(-) (11)	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g56050.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.205401.1.S1_x_at	A	A1TS	POPTR_0005s19220	POPTR_0005s19220 (9)	scaffold_5:17895706-17895973(-) (11)	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g56050.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.205402.1.S1_at	A	A1TS	POPTR_0005s19240	POPTR_0005s19240 (10)	scaffold_5:17960905-17961481(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205404.1.S1_at	A	A2TS	POPTR_0005s19290	POPTR_0114s00210 (11)//POPTR_0005s19290 (11)	scaffold_114:22036-23103(-) (11)//scaffold_5:18008974-18010049(-) (11)	NA	Q9FJX0	Peptidyl-prolyl cis-trans isomerase-like 2	AT5G67530.1	plant U-box 49 	LOC_Os03g10400.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.205405.1.S1_at	A	A1TS	POPTR_0005s19310	POPTR_0005s19310 (11)	scaffold_5:18038200-18038344(-) (11)	NA	Q9LSL6	Dof zinc finger protein DOF5.7	AT5G65590.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os03g38870.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr5g032870.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.205405.1.S1_x_at	A	A1TS	POPTR_0005s19310	POPTR_0005s19310 (11)	scaffold_5:18038160-18038344(-) (11)	NA	Q9LSL6	Dof zinc finger protein DOF5.7	AT5G65590.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os03g38870.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr5g032870.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.205406.1.S1_at	A	A1TS	POPTR_0005s19320	POPTR_0005s19320 (11)	scaffold_5:18050925-18051464(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205407.1.S1_at	A	A1TS	POPTR_0005s19330	POPTR_0005s19330 (9)	scaffold_5:18070146-18070843(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205408.1.S1_at	A	A1TS	POPTR_0005s19340	POPTR_0005s19340 (11)	scaffold_5:18077295-18078266(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT3G49900.1	Phototropic-responsive NPH3 family protein 	LOC_Os07g39850.1	expressed protein	Medtr5g015650.1	BTB/POZ domain-containing protein 	NA	GO:0005515|protein binding	NA
PtpAffx.205411.1.S1_at	A	A1TS	POPTR_0005s19380	POPTR_0005s19380 (10)	scaffold_5:18208605-18209129(+) (11)	NA	NA	NA	AT1G10020.1	Protein of unknown function (DUF1005) 	LOC_Os07g04150.1	"stress-induced protein, putative, expressed"	Medtr5g005600.1	Protein of unknown function DUF1005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205413.1.S1_at	A	A1TS	POPTR_0005s19410	POPTR_0005s19410 (11)	scaffold_5:18244678-18245196(+) (11)	NA	Q9FME8	Oligopeptide transporter 4	AT5G64410.1	oligopeptide transporter 4 	LOC_Os01g43940.1	"oligopeptide transporter, putative"	Medtr4g121720.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205416.1.S1_at	A	A1TS	POPTR_0005s19420	POPTR_0005s19420 (9)	scaffold_5:18264598-18267955(-) (11)	NA	Q6EP49	MADS-box transcription factor 27	AT3G57230.1	AGAMOUS-like 16 	LOC_Os02g36924.1	"OsMADS27 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g075960.1	"Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.205417.1.S1_at	A	A1TS	POPTR_0005s19450	POPTR_0005s19450 (11)	scaffold_5:18318057-18318298(+) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT1G09910.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127440.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205418.1.S1_at	A	A1TS	POPTR_0005s19460	POPTR_0005s19460 (11)	scaffold_5:18329792-18330950(+) (11)	NA	NA	NA	AT1G09880.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44040.1	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127450.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205420.1.S1_at	A	A1TS	POPTR_0005s19490	POPTR_0005s19490 (11)	scaffold_5:18363291-18363937(-) (11)	NA	NA	NA	AT2G22610.1	Di-glucose binding protein with Kinesin motor domain 	NA	NA	Medtr5g032890.1	"Kinesin, motor region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205421.1.S1_at	A	A1TS	POPTR_0005s19500	POPTR_0005s19500 (10)	scaffold_5:18367903-18368484(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205422.1.S1_at	A	A1TS	POPTR_0005s19510	POPTR_0005s19510 (11)	scaffold_5:18371780-18372276(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205423.1.S1_at	A	A1TS	POPTR_0005s19515	POPTR_0005s19515 (11)	scaffold_5:18374065-18374573(-) (11)	NA	Q9S784	HVA22-like protein c	AT1G69700.1	HVA22 homologue C 	LOC_Os11g38920.2	"HVA22, putative, expressed"	Medtr5g075600.1	"Ribonuclease H; Zinc finger, U1-type; TB2/DP1 and HVA22 related protein "	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	NA
PtpAffx.205424.1.S1_at	A	A1TS	POPTR_0005s19530	POPTR_0005s19530 (11)	scaffold_5:18386340-18387087(+) (11)	NA	NA	NA	AT5G49680.2	Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain 	LOC_Os03g47754.1	"SAB, putative, expressed"	Medtr3g149940.1	"SAB, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205426.1.S1_at	A	A1TS	POPTR_0005s19560	POPTR_0005s19560 (11)	scaffold_5:18446299-18447374(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205427.1.S1_at	A	A1MS	POPTR_0005s19570	POPTR_0005s19570 (11)	scaffold_5:18450884-18451422(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205429.1.S1_at	A	A1TS	POPTR_0005s19600	POPTR_0005s19600 (11)	scaffold_5:18485124-18486074(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT1G58230.1	binding 	LOC_Os02g06720.1	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205430.1.S1_at	A	A1TS	POPTR_0005s19610	POPTR_0005s19610 (11)	scaffold_5:18490656-18491673(-) (11)	NA	NA	NA	AT1G58230.1	binding 	LOC_Os02g06720.1	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205431.1.S1_at	A	A1TS	POPTR_0005s19670	POPTR_0005s19670 (9)	scaffold_5:18603203-18603744(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205431.1.S1_x_at	A	A1TS	POPTR_0005s19670	POPTR_0005s19670 (9)	scaffold_5:18603203-18603744(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205433.1.S1_s_at	A	A1TS	POPTR_0005s19680	POPTR_0005s19680 (11)	scaffold_5:18615815-18615935(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205434.1.S1_at	A	A1TS	POPTR_0005s19690	POPTR_0005s19690 (11)	scaffold_5:18629634-18630176(+) (11)	NA	O24645	Anthranilate N-benzoyltransferase protein 1	AT4G24510.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g52164.1	"transferase family protein, putative, expressed"	Medtr2g041620.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205436.1.S1_at	A	A1TS	POPTR_0005s17920	POPTR_0005s17920 (11)	scaffold_5:15735807-15736134(-) (11)	NA	P48353	Protein HLJ1	AT2G01710.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g27460.3	"heat shock protein DnaJ, putative, expressed"	Medtr5g075120.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding||GO:0003677|DNA binding	NA
PtpAffx.205438.1.S1_at	A	A1TS	POPTR_0005s17970	POPTR_0005s17970 (11)	scaffold_5:15843689-15844602(-) (11)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.1	Cysteine proteinases superfamily protein 	LOC_Os05g11770.1	"ulp1 protease family protein, putative, expressed"	Medtr3g149330.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.205438.1.S1_x_at	A	A1TS	POPTR_0005s17970	POPTR_0005s17970 (11)	scaffold_5:15843689-15844602(-) (11)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.1	Cysteine proteinases superfamily protein 	LOC_Os05g11770.1	"ulp1 protease family protein, putative, expressed"	Medtr3g149330.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.205439.1.S1_at	A	A1TS	POPTR_0005s17900	POPTR_0005s17900 (11)	scaffold_5:15718023-15718188(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205440.1.S1_at	A	A1TS	POPTR_0005s17890	POPTR_0005s17890 (11)	scaffold_5:15713119-15713470(-) (11)	NA	NA	NA	AT5G21990.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g06710.1	"tetratricopeptide repeat, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205440.1.S1_x_at	A	A1TS	POPTR_0005s17890	POPTR_0005s17890 (11)	scaffold_5:15713119-15713516(-) (11)	NA	NA	NA	AT5G21990.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g06710.1	"tetratricopeptide repeat, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205441.1.S1_at	A	A1TS	POPTR_0005s17850	POPTR_0005s17850 (11)	scaffold_5:15606214-15606448(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT5G49700.1	Predicted AT-hook DNA-binding family protein 	LOC_Os04g50030.1	"DNA binding protein, putative, expressed"	Medtr3g149230.1	Predicted AT-hook DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205443.1.S1_at	A	A1TS	POPTR_0005s17780	POPTR_0005s17780 (9)	scaffold_5:15525554-15528193(+) (11)	NA	NA	NA	AT4G24580.1	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr3g149080.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.205444.1.S1_at	A	A1TS	POPTR_0005s17750	POPTR_0005s17750 (11)	scaffold_5:15447877-15448887(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205445.1.S1_at	A	A1TS	POPTR_0005s17720	POPTR_0005s17720 (11)	scaffold_5:15417821-15418131(-) (11)	NA	Q4KYM5	Cyclin-D4-2	AT5G65420.1	CYCLIN D4;1 	LOC_Os08g37390.1	"cyclin, putative, expressed"	Medtr3g148920.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.205445.1.S1_x_at	A	A1TS	POPTR_0005s17720	POPTR_0005s17720 (11)	scaffold_5:15417457-15418281(-) (11)	NA	Q4KYM5	Cyclin-D4-2	AT5G65420.1	CYCLIN D4;1 	LOC_Os08g37390.1	"cyclin, putative, expressed"	Medtr3g148920.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.205447.1.S1_at	A	A1TS	POPTR_0005s17680	POPTR_0005s17680 (10)	scaffold_5:15340539-15341053(+) (11)	NA	Q6NLE0	F-box protein At5g41720	AT5G41720.1	BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT1G64290.1); Has 70 Blast hits to 70 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g43530.1	OsFBX306 - F-box domain containing protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205448.1.S1_at	A	A1TS	POPTR_0005s17640	POPTR_0005s17640 (11)	scaffold_5:15238226-15238771(-) (11)	NA	Q9SGN7	Serine/threonine-protein kinase-like protein At1g28390	AT1G28390.1	Protein kinase superfamily protein 	LOC_Os05g32170.1	"TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr3g148970.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205450.1.S1_at	A	A1TS	POPTR_0005s17570	POPTR_0005s17570 (11)	scaffold_5:15170098-15170853(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205452.1.S1_at	A	A1MS	POPTR_0005s17540	POPTR_0005s17540 (11)	scaffold_5:15117086-15117666(+) (11)	NA	Q3E911	Pentatricopeptide repeat-containing protein At5g27460	AT5G27460.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g55310.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205454.1.S1_s_at	A	A1TS	POPTR_0005s17520	POPTR_0005s17520 (11)	scaffold_5:15105754-15106492(+) (11)	NA	Q9FZ95	Purine permease 3	AT1G28220.1	purine permease 3 	LOC_Os09g29239.1	"purine permease, putative, expressed"	Medtr3g150070.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.205455.1.S1_at	A	A1TS	POPTR_0005s17510	POPTR_0005s17510 (11)	scaffold_5:15079273-15079381(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205456.1.S1_at	A	A1TS	POPTR_0005s17500	POPTR_0005s17500 (11)	scaffold_5:15047057-15047568(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205458.1.S1_at	A	A1TS	POPTR_0005s17480	POPTR_0005s17480 (11)	scaffold_5:15011510-15014247(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G65380.1	MATE efflux family protein 	LOC_Os03g08900.1	"MATE efflux family protein, putative, expressed"	Medtr3g150090.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.205460.1.S1_at	A	A1TS	POPTR_0005s17460	POPTR_0005s17460 (11)	scaffold_5:14899250-14899685(+) (11)	NA	Q84W40	RING-H2 finger protein ATL11	AT1G72200.1	RING/U-box superfamily protein 	LOC_Os09g29310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g150140.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205461.1.S1_at	A	A1TS	POPTR_0005s17430	POPTR_0005s17430 (11)	scaffold_5:14783245-14784532(-) (11)	NA	Q23623	Probable queuine tRNA-ribosyltransferase	NA	NA	LOC_Os09g29420.1	"queuine tRNA-ribosyltransferase, putative, expressed"	Medtr5g107040.1	Queuine/other tRNA-ribosyltransferase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044260|cellular macromolecule metabolic process||GO:0008616|queuosine biosynthetic process	GO:0008479|queuine tRNA-ribosyltransferase activity	NA
PtpAffx.205462.1.S1_at	A	A1TS	POPTR_0005s17420	POPTR_0005s17420 (10)	scaffold_5:14774943-14775201(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205465.1.S1_at	A	A1TS	POPTR_0005s17400	POPTR_0005s17400 (11)	scaffold_5:14763147-14763724(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205466.1.S1_s_at	A	A1TS	POPTR_0005s17370	POPTR_0005s17370 (11)	scaffold_5:14690816-14691226(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g150310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205467.1.S1_at	A	A1TS	POPTR_0005s17360	POPTR_0005s17360 (11)	scaffold_5:14665642-14667054(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G22460.1	O-fucosyltransferase family protein 	LOC_Os06g11600.3	"growth regulator related protein, putative, expressed"	Medtr3g150330.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205468.1.S1_at	A	A1TS	POPTR_0005s17340	POPTR_0005s17340 (11)	scaffold_5:14659889-14660843(+) (11)	NA	B8E0R9	Seryl-tRNA synthetase	AT1G11870.3	Seryl-tRNA synthetase 	LOC_Os11g39670.1	"seryl-tRNA synthetase, putative, expressed"	Medtr3g150340.1	"tRNA synthetase, class II (G, H, P and S) "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205469.1.S1_s_at	A	A1TS	POPTR_0005s17260	POPTR_0005s17260 (11)	scaffold_5:14487692-14488085(+) (11)	NA	Q2KJ44	Serine/threonine-protein phosphatase 2A activator	AT4G08960.1	phosphotyrosyl phosphatase activator (PTPA) family protein 	LOC_Os06g11640.1	"serine/threonine-protein phosphatase 2A activator 2, putative, expressed"	Medtr4g069930.1	"Phosphotyrosyl phosphatase activator, PTPA "	NA	GO:0019211|phosphatase activator activity	NA
PtpAffx.205470.1.S1_at	A	A1TS	POPTR_0019s06240	POPTR_0019s06240 (11)	scaffold_19:6842927-6843315(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205470.1.S1_x_at	A	A1TS	POPTR_0019s06240	POPTR_0019s06240 (11)	scaffold_19:6842927-6843315(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205471.1.S1_at	A	A1TS	POPTR_0005s17180	POPTR_0005s17180 (11)	scaffold_5:14349591-14351261(-) (11)	NA	Q9C9Q8	Probable pectin methyltransferase QUA2	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr5g072950.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.205472.1.S1_at	A	A1TS	POPTR_0005s17160	POPTR_0005s17160 (11)	scaffold_5:14281845-14282696(-) (11)	NA	NA	NA	AT1G22310.2	methyl-CPG-binding domain 8 	LOC_Os09g29750.1	"ZOS9-15 - C2H2 zinc finger protein, expressed"	Medtr2g009110.1	"Zinc finger, C2H2-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.205473.1.S1_at	A	A1TS	POPTR_0005s17140	POPTR_0005s17140 (11)	scaffold_5:14273691-14274981(+) (11)	NA	P43355	Melanoma-associated antigen 1	AT1G34770.1	CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). 	LOC_Os07g05650.1	"MAGE-8 antigen-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205474.1.S1_at	A	A1TS	POPTR_0005s17130	POPTR_0005s17130 (11)	scaffold_5:14267668-14267813(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205475.1.S1_at	A	A1TS	POPTR_0005s17050	POPTR_0005s17050 (11)	scaffold_5:14155531-14155842(+) (11)	NA	NA	NA	AT1G34630.1	BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	LOC_Os03g09090.1	expressed protein	Medtr2g052140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205476.1.S1_at	A	A1TS	POPTR_0005s16980	POPTR_0005s16980 (9)	scaffold_5:14020227-14021049(+) (11)	NA	NA	NA	AT1G78130.1	Major facilitator superfamily protein 	LOC_Os08g31670.1	"transporter, putative, expressed"	Medtr5g072270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205478.1.S1_at	A	A1TS	POPTR_0005s16960	POPTR_0005s16960 (11)	scaffold_5:13965906-13966618(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205479.1.S1_at	A	A1TS	POPTR_0005s16950	POPTR_0005s16950 (11)	scaffold_5:13947691-13948770(-) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT5G65160.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205481.1.S1_at	A	A1TS	POPTR_0005s16930	POPTR_0005s16930 (11)	scaffold_5:13921304-13921681(+) (11)	NA	Q9LM18	F-box protein At1g22220	AT1G22220.1	F-box family protein 	LOC_Os05g41130.1	"OsFBX168 - F-box domain containing protein, expressed"	Medtr4g031470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205481.1.S1_x_at	A	A1TS	POPTR_0005s16930	POPTR_0005s16930 (11)	scaffold_5:13921263-13921679(+) (11)	NA	Q9LM18	F-box protein At1g22220	AT1G22220.1	F-box family protein 	LOC_Os05g41130.1	"OsFBX168 - F-box domain containing protein, expressed"	Medtr4g031470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205482.1.S1_at	A	A1TS	POPTR_0005s16920	POPTR_0005s16920 (11)	scaffold_5:13901167-13901725(-) (11)	NA	NA	NA	AT2G27080.2	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os12g03370.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g094840.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.205483.1.S1_at	A	A1MS	POPTR_0005s16910	POPTR_0005s16910 (10)	scaffold_5:13883815-13885055(+) (10)	NA	O50401	Trehalose-phosphate phosphatase	AT5G65140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g31630.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr5g072070.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.205484.1.S1_at	A	A1TS	POPTR_0005s16900	POPTR_0005s16900 (10)	scaffold_5:13857749-13858492(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205486.1.S1_at	A	A1TS	POPTR_0005s16630	POPTR_0005s16630 (11)	scaffold_5:13611207-13611303(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205487.1.S1_at	A	A1TS	POPTR_0005s16620	POPTR_0005s16620 (11)	scaffold_5:13592030-13593323(-) (11)	NA	Q55CU8	Random slug protein 5	AT1G22180.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g51610.2	"CRAL/TRIO domain containing protein, expressed"	CU651566_8.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal CU651566.9 36825-34547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205488.1.S1_at	A	A1TS	POPTR_0005s16610	POPTR_0005s16610 (11)	scaffold_5:13588969-13589549(+) (11)	NA	Q6MEW4	"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase"	AT1G22170.1	Phosphoglycerate mutase family protein 	LOC_Os02g51590.1	"phosphoglycerate mutase, putative, expressed"	CU651566_7.1	Phosphoglycerate mutase 1 CU651566.9 30664-34534 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205489.1.S1_s_at	A	A1TS	POPTR_0005s16590	POPTR_0005s16590 (11)	scaffold_5:13503751-13505164(-) (11)	NA	Q5B5X8	"Probable glucan 1,3-beta-glucosidase A"	NA	NA	LOC_Os10g22520.1	"cellulase, putative, expressed"	Medtr3g010400.1	"Glycoside hydrolase, family 5; Actin-crosslinking proteins "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205490.1.S1_at	A	A1MS	POPTR_0005s16590	POPTR_0005s16590 (10)	scaffold_5:13502938-13503173(-) (11)	NA	Q5B5X8	"Probable glucan 1,3-beta-glucosidase A"	NA	NA	LOC_Os10g22520.1	"cellulase, putative, expressed"	Medtr3g010400.1	"Glycoside hydrolase, family 5; Actin-crosslinking proteins "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205491.1.S1_at	A	A1TS	POPTR_0005s16540	POPTR_0005s16540 (10)	scaffold_5:13402543-13402965(-) (10)	NA	Q13085	Acetyl-CoA carboxylase 1	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
PtpAffx.205492.1.S1_at	A	A1TS	POPTR_0005s16530	POPTR_0005s16530 (11)	scaffold_5:13390597-13391959(+) (11)	NA	Q9FEP7	Sulfate transporter 1.3	AT1G22150.1	sulfate transporter 1;3 	LOC_Os03g09970.4	"sulfate transporter, putative, expressed"	CU651589_4.1	Sulphate transporter CU651589.4 23367-27023 H EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.205493.1.S1_at	A	A2MS	POPTR_0005s16520	POPTR_0005s16520 (11)//POPTR_0425s00200 (11)	scaffold_425:13333-13773(+) (11)//scaffold_5:13372090-13372530(-) (11)	NA	NA	NA	AT1G22140.1	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g26791.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205494.1.S1_at	A	A1TS	POPTR_0005s16510	POPTR_0005s16510 (11)	scaffold_5:13363169-13364407(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205495.1.S1_at	A	A1TS	POPTR_0005s16480	POPTR_0005s16480 (10)	scaffold_5:13272231-13272708(-) (10)	NA	NA	NA	AT1G22110.1	structural constituent of ribosome 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205497.1.S1_at	A	A1TS	POPTR_0005s16470	POPTR_0005s16470 (11)	scaffold_5:13238394-13238944(-) (11)	NA	NA	NA	AT1G22110.1	structural constituent of ribosome 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205498.1.S1_at	A	A1TS	POPTR_0005s16450	POPTR_0005s16450 (9)	scaffold_5:13208348-13208688(+) (11)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os10g21940.1	expressed protein	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205498.1.S1_s_at	A	A1TS	POPTR_0005s16450	POPTR_0005s16450 (11)	scaffold_5:13208419-13208639(+) (11)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os10g21940.1	expressed protein	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205499.1.S1_at	A	A1TS	POPTR_0005s16450	POPTR_0005s16450 (11)	scaffold_5:13199511-13200499(+) (11)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os10g21940.1	expressed protein	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205500.1.S1_at	A	A1TS	POPTR_0005s16420	POPTR_0005s16420 (11)	scaffold_5:13167883-13168421(+) (11)	NA	Q0WNP3	Pentatricopeptide repeat-containing protein At4g18520	AT4G18520.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g44210.2	expressed protein	Medtr4g114870.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205501.1.S1_at	A	A1TS	POPTR_0005s16390	POPTR_0005s16390 (11)	scaffold_5:13110522-13112724(+) (11)	NA	Q9LZM3	Phosphopantothenate--cysteine ligase 2	AT1G12350.1	4-phospho-panto-thenoylcysteine synthetase 	LOC_Os02g36550.1	"phosphopantothenate--cysteine ligase, putative, expressed"	Medtr8g116490.1	"DNA/pantothenate metabolism flavoprotein, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205502.1.S1_at	A	A1TS	POPTR_0005s16380	POPTR_0005s16380 (10)	scaffold_5:13069245-13069320(-) (10)	NA	NA	NA	AT1G22030.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g01400.1	expressed protein	Medtr4g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205502.1.S1_s_at	A	A2TS	POPTR_0002s09090	POPTR_0002s09090 (11)//POPTR_0005s16380 (11)	scaffold_2:6431876-6432133(-) (11)//scaffold_5:13069106-13069363(-) (11)	NA	NA	NA	AT1G22030.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g01400.1	expressed protein	Medtr4g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205502.1.S1_x_at	A	A1TS	POPTR_0005s16380	POPTR_0005s16380 (11)	scaffold_5:13069099-13069396(-) (11)	NA	NA	NA	AT1G22030.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g01400.1	expressed protein	Medtr4g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205503.1.S1_at	A	A1TS	POPTR_0005s16340	POPTR_0005s16340 (11)	scaffold_5:13057714-13058540(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205504.1.S1_at	A	A1TS	POPTR_0005s16330	POPTR_0005s16330 (11)	scaffold_5:13055544-13055864(+) (11)	NA	Q8DJB3	Protein grpE	AT1G36390.2	Co-chaperone GrpE family protein 	LOC_Os02g39870.1	"co-chaperone GrpE protein, putative, expressed"	Medtr7g104090.1	"GrpE protein, head "	GO:0006457|protein folding||GO:0030150|protein import into mitochondrial matrix||GO:0044260|cellular macromolecule metabolic process	GO:0000774|adenyl-nucleotide exchange factor activity||GO:0051087|chaperone binding||GO:0042803|protein homodimerization activity	GO:0005739|mitochondrion
PtpAffx.205505.1.S1_at	A	A1TS	POPTR_0005s16320	POPTR_0005s16320 (11)	scaffold_5:13051013-13051559(+) (11)	NA	Q84WU6	Auxin response factor 17	AT1G77850.1	auxin response factor 17 	LOC_Os10g33940.1	"auxin response factor 18, putative, expressed"	Medtr5g044210.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.205506.1.S1_at	A	A1TS	POPTR_0005s16320	POPTR_0005s16320 (11)	scaffold_5:13048775-13049215(+) (11)	NA	Q84WU6	Auxin response factor 17	AT1G77850.1	auxin response factor 17 	LOC_Os10g33940.1	"auxin response factor 18, putative, expressed"	Medtr5g044210.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.205507.1.S1_at	A	A1TS	POPTR_0005s16310	POPTR_0005s16310 (11)	scaffold_5:13037566-13038495(-) (11)	NA	Q6NQB7	"Beta-1,3-galactosyltransferase 7"	AT1G77810.2	Galactosyltransferase family protein 	LOC_Os02g35870.2	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.205508.1.S1_at	A	A1TS	POPTR_0005s16300	POPTR_0005s16300 (11)	scaffold_5:13029899-13030378(-) (11)	NA	O74396	Vacuolar protein sorting-associated protein 9a	AT3G19770.1	Vacuolar sorting protein 9 (VPS9) domain 	LOC_Os03g15650.1	"vacuolar sorting protein, putative, expressed"	Medtr3g010530.1	Vacuolar sorting protein 9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205510.1.S1_at	A	A1TS	POPTR_0005s16240	POPTR_0005s16240 (11)	scaffold_5:12952628-12953209(-) (11)	NA	P12257	Lichenase-2 (Fragment)	AT1G77780.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g58730.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr7g092900.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.205511.1.S1_at	A	A1TS	POPTR_0005s16230	POPTR_0005s16230 (11)	scaffold_5:12950822-12951274(+) (11)	NA	NA	NA	AT1G36990.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). 	NA	NA	Medtr3g098440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205511.1.S1_s_at	A	A1TS	POPTR_0005s16230	POPTR_0005s16230 (11)	scaffold_5:12951169-12951660(+) (11)	NA	NA	NA	AT1G36990.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). 	NA	NA	Medtr3g098440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205512.1.S1_at	A	A1TS	POPTR_0005s16220	POPTR_0005s16220 (11)	scaffold_5:12946268-12947081(+) (11)	NA	NA	NA	AT1G36990.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). 	LOC_Os04g37540.1	expressed protein	Medtr3g098440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205513.1.S1_s_at	A	A1TS	POPTR_0005s16170	POPTR_0005s16170 (11)	scaffold_5:12832904-12833302(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205514.1.S1_at	A	A1TS	POPTR_0005s16150	POPTR_0005s16150 (11)	scaffold_5:12802747-12803221(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205515.1.S1_at	A	A1TS	POPTR_0005s16130	POPTR_0005s16130 (11)	scaffold_5:12774787-12778297(+) (11)	NA	Q8L751	Oxysterol-binding protein-related protein 1C	AT4G08180.1	OSBP(oxysterol binding protein)-related protein 1C 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.205516.1.S1_at	A	A1TS	POPTR_0005s16110	POPTR_0005s16110 (11)	scaffold_5:12763728-12764136(+) (11)	NA	Q920N2	Biotin--protein ligase	AT2G25710.2	holocarboxylase synthase 1 	LOC_Os02g07040.2	"biotin--protein ligase, putative, expressed"	Medtr3g098110.2	Biotin--acetyl-CoA-carboxylase ligase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0003824|catalytic activity	NA
PtpAffx.205517.1.S1_at	A	A1TS	POPTR_0005s16090	POPTR_0005s16090 (11)	scaffold_5:12744043-12744719(-) (11)	NA	NA	NA	AT1G43770.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os12g06440.1	expressed protein	Medtr6g043480.1	"Zinc finger, C2H2-type; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205518.1.S1_at	A	A1TS	POPTR_0005s16070	POPTR_0005s16070 (11)	scaffold_5:12725560-12726095(-) (11)	NA	NA	NA	AT1G75710.1	C2H2-like zinc finger protein 	LOC_Os04g59380.1	"ZOS4-14 - C2H2 zinc finger protein, expressed"	Medtr3g098000.1	"T2E6.3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205520.1.S1_at	A	A1TS	POPTR_0005s16030	POPTR_0005s16030 (11)	scaffold_5:12684279-12684844(+) (11)	NA	P50699	Thaumatin-like protein	AT1G77700.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os04g59370.1	"thaumatin, putative, expressed"	Medtr5g065310.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205521.1.S1_at	A	A1TS	POPTR_0005s16020	POPTR_0005s16020 (11)	scaffold_5:12672363-12672421(-) (11)	NA	Q9FEL6	Auxin transporter-like protein 3	AT1G77690.1	like AUX1 3 	LOC_Os03g14080.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g097960.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205522.1.S1_at	A	A1TS	POPTR_0005s15990	POPTR_0005s15990 (11)	scaffold_5:12641243-12641312(+) (11)	NA	Q38896	Glycine-rich protein 2b	AT2G17870.1	cold shock domain protein 3 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.205522.1.S1_x_at	A	A1TS	POPTR_0005s15990	POPTR_0005s15990 (11)	scaffold_5:12641150-12641312(+) (11)	NA	Q38896	Glycine-rich protein 2b	AT2G17870.1	cold shock domain protein 3 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.205523.1.S1_at	A	A1TS	POPTR_0005s15980	POPTR_0005s15980 (11)	scaffold_5:12636897-12638355(-) (11)	NA	NA	NA	AT1G16810.2	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os02g49530.2	"AGAP000425-PA, putative, expressed"	Medtr3g133530.1	"Protein of unknown function DUF1754, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205524.1.S1_at	A	A1TS	POPTR_0005s15970	POPTR_0005s15970 (11)	scaffold_5:12625784-12626578(-) (11)	NA	Q9UTS8	UPF0695 membrane protein C977.11/PB8B6.06c	AT2G41705.2	camphor resistance CrcB family protein 	LOC_Os10g41749.5	"crcB-like protein, expressed"	Medtr3g097920.1	Camphor resistance CrcB protein 	NA	NA	GO:0016020|membrane
PtpAffx.205525.1.S1_at	A	A1TS	POPTR_0005s15950	POPTR_0005s15950 (11)	scaffold_5:12604116-12604465(-) (11)	NA	Q8IYB7	DIS3-like exonuclease 2	AT1G77680.1	Ribonuclease II/R family protein 	LOC_Os02g51780.1	"ribonuclease protein, putative, expressed"	Medtr5g065170.1	Ribonuclease II 	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.205526.1.S1_at	A	A1TS	POPTR_0005s15900	POPTR_0005s15900 (11)	scaffold_5:12556130-12556594(-) (11)	NA	Q5NE24	Nodulation-signaling pathway 2 protein	AT4G08250.1	GRAS family transcription factor 	LOC_Os03g15680.1	"nodulation-signaling pathway 2 protein, putative"	Medtr3g097800.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205527.1.S1_at	A	A2TS	POPTR_0005s15860	POPTR_0005s15880 (11)//POPTR_0005s15860 (11)	scaffold_5:12515618-12516182(-) (11)//scaffold_5:12522134-12522701(-) (11)	NA	Q494P0	Probable inorganic phosphate transporter 1-7	AT3G54700.1	phosphate transporter 1;7 	LOC_Os03g05610.1	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.205528.1.S1_at	A	A1TS	POPTR_0005s15830	POPTR_0005s15830 (11)	scaffold_5:12449757-12450281(+) (11)	NA	Q9SFE4	Ethylene-responsive transcription factor ERF012	AT1G21910.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g10780.1	"AP2 domain containing protein, expressed"	Medtr5g065700.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.205529.1.S1_at	A	A1TS	POPTR_0005s15820	POPTR_0005s15820 (11)	scaffold_5:12406499-12408022(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT4G08290.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097620.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.205530.1.S1_at	A	A1TS	POPTR_0005s15790	POPTR_0005s15790 (11)	scaffold_5:12391013-12391963(+) (11)	NA	NA	NA	AT4G08310.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins in 1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes - 15245 (source: NCBI BLink). 	LOC_Os11g34190.1	expressed protein	Medtr3g097550.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205531.1.S1_at	A	A1MS	POPTR_0005s19930	POPTR_0005s19930 (10)	scaffold_5:18917461-18917538(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205531.1.S1_s_at	A	A1TS	POPTR_0005s19930	POPTR_0005s19930 (11)	scaffold_5:18916852-18917185(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205532.1.S1_at	A	A1TS	POPTR_0005s19930	POPTR_0005s19930 (11)	scaffold_5:18919531-18919832(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205534.1.S1_at	A	A1MS	POPTR_0005s20020	POPTR_0005s20020 (9)	scaffold_5:19012459-19024307(-) (10)	NA	Q7Y1X1	Esterase	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g037590.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.205536.1.S1_at	A	A1TS	POPTR_0005s20040	POPTR_0005s20040 (11)	scaffold_5:19065858-19066284(+) (11)	NA	Q8LLE5	Filament-like plant protein (Fragment)	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os11g06910.2	"myosin heavy chain-related, putative, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205537.1.S1_at	A	A1TS	POPTR_0005s20120	POPTR_0005s20120 (11)	scaffold_5:19158481-19159165(-) (11)	NA	Q43116	Protein disulfide-isomerase	AT1G21750.1	PDI-like 1-1 	LOC_Os11g09280.2	"OsPDIL1-1  protein disulfide isomerase PDIL1-1, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.205538.1.S1_at	A	A1TS	POPTR_0005s20130	POPTR_0005s20130 (11)	scaffold_5:19168484-19168804(-) (11)	NA	NA	NA	AT1G21740.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g35070.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205539.1.S1_x_at	A	A1TS	POPTR_0005s20140	POPTR_0005s20140 (11)	scaffold_5:19188507-19188624(-) (11)	NA	Q42593	"L-ascorbate peroxidase T, chloroplastic"	AT1G77490.1	thylakoidal ascorbate peroxidase 	LOC_Os02g34810.1	"OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr3g100720.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.20554.1.S1_at	A	A1TS	POPTR_0010s17720	POPTR_0010s17720 (11)	scaffold_10:16207127-16208576(+) (11)	NA	NA	NA	AT3G19810.1	Protein of unknown function (DUF177) 	LOC_Os02g58450.1	"uncharacterized ACR, COG1399 family protein, expressed"	Medtr4g135210.1	Protein of unknown function DUF177 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205540.1.S1_at	A	A1TS	POPTR_0005s20150	POPTR_0005s20150 (11)	scaffold_5:19213719-19215013(+) (11)	NA	Q70DU8	Aldehyde dehydrogenase family 3 member H1	AT1G44170.2	aldehyde dehydrogenase 3H1 	LOC_Os11g08300.1	"aldehyde dehydrogenase, putative, expressed"	Medtr3g100730.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.205541.1.S1_at	A	A1TS	POPTR_0005s20160	POPTR_0005s20160 (11)	scaffold_5:19215527-19216464(-) (11)	NA	Q80Y75	DnaJ homolog subfamily B member 13	AT1G11040.1	HSP40/DnaJ peptide-binding protein 	LOC_Os01g65480.1	"dnaJ domain containing protein, expressed"	Medtr3g100740.1	"Chaperone DnaJ, C-terminal "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	NA
PtpAffx.205542.1.S1_at	A	A1TS	POPTR_0005s20170	POPTR_0005s20170 (11)	scaffold_5:19231540-19232113(+) (11)	NA	Q9SCJ9	Ubiquitin carboxyl-terminal hydrolase 26	AT3G49600.1	ubiquitin-specific protease 26 	LOC_Os03g09260.1	"ubiquitin carboxyl-terminal hydrolase 26, putative, expressed"	Medtr3g133630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.205543.1.S1_at	A	A1TS	POPTR_0005s20220	POPTR_0005s20220 (11)	scaffold_5:19255517-19256460(+) (11)	NA	P40937	Replication factor C subunit 5	AT1G77470.1	replication factor C subunit 3 	LOC_Os02g53500.2	"RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed"	Medtr3g100750.1	"AAA ATPase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
PtpAffx.205544.1.S1_at	A	A1TS	POPTR_0005s20230	POPTR_0005s20230 (11)	scaffold_5:19257226-19258332(-) (11)	NA	NA	NA	AT1G77460.2	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein 	LOC_Os11g08090.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205546.1.S1_at	A	A1TS	POPTR_0005s20260	POPTR_0005s20260 (10)	scaffold_5:19306669-19307284(-) (10)	NA	NA	NA	AT1G21722.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78922.1); Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205547.1.S1_at	A	A1TS	POPTR_0005s20280	POPTR_0005s20280 (11)	scaffold_5:19335546-19337205(+) (11)	NA	Q8GX69	Beta-galactosidase 16	AT1G77410.1	beta-galactosidase 16 	LOC_Os05g35360.1	"beta-galactosidase 7 precursor, putative, expressed"	Medtr3g100550.1	Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.205548.1.S1_at	A	A1TS	POPTR_0005s20310	POPTR_0005s20310 (10)	scaffold_5:19356066-19356409(-) (11)	NA	Q9SAH8	Metal transporter Nramp1	AT1G80830.1	natural resistance-associated macrophage protein 1 	LOC_Os07g15370.1	"metal transporter Nramp6, putative, expressed"	Medtr3g100650.1	Natural resistance-associated macrophage protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205550.1.S1_at	A	A2TS	POPTR_0005s20320	POPTR_0005s20350 (11)//POPTR_0005s20320 (11)	scaffold_5:19359341-19359455(-) (11)//scaffold_5:19381443-19381557(-) (11)	NA	Q9S9N8	Metal transporter Nramp6	AT1G15960.1	NRAMP metal ion transporter 6 	LOC_Os07g15370.1	"metal transporter Nramp6, putative, expressed"	Medtr3g100650.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.205550.1.S1_s_at	A	A2TS	POPTR_0005s20320	POPTR_0005s20350 (11)//POPTR_0005s20320 (11)	scaffold_5:19358961-19359683(-) (11)//scaffold_5:19381062-19381785(-) (11)	NA	Q9S9N8	Metal transporter Nramp6	AT1G15960.1	NRAMP metal ion transporter 6 	LOC_Os07g15370.1	"metal transporter Nramp6, putative, expressed"	Medtr3g100650.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.205551.1.S1_at	A	A1TS	POPTR_0005s20420	POPTR_0005s20420 (11)	scaffold_5:19483919-19484505(+) (11)	NA	O04086	Probable receptor-like protein kinase At1g11050	AT1G11050.1	Protein kinase superfamily protein 	LOC_Os05g34950.1	"cysteine-rich receptor-like protein kinase 6 precursor, putative, expressed"	Medtr2g006980.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205552.1.S1_at	A	A1TS	POPTR_0005s20430	POPTR_0005s20430 (11)	scaffold_5:19486199-19486767(-) (11)	NA	Q9FVX2	"Pentatricopeptide repeat-containing protein At1g77360, mitochondrial"	AT1G77360.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g55340.1	"pentatricopeptide, putative, expressed"	Medtr1g137270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205553.1.S1_at	A	A1TS	POPTR_0005s20450	POPTR_0005s20450 (11)	scaffold_5:19501042-19501436(+) (11)	NA	Q03520	Tetrachloro-P-hydroquinone reductive dehalogenase	AT1G77290.2	Glutathione S-transferase family protein 	LOC_Os04g35560.2	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205554.1.S1_at	A	A1TS	POPTR_0005s20460	POPTR_0005s20460 (9)	scaffold_5:19507251-19508461(-) (10)	NA	Q2LAE1	Histone-lysine N-methyltransferase ASHH2	AT1G77300.1	histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) 	LOC_Os02g34850.1	"histone-lysine N-methyltransferase ASHH2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205555.1.S1_at	A	A1TS	POPTR_0005s20480	POPTR_0005s20480 (11)	scaffold_5:19532843-19535085(-) (11)	NA	Q07474	Floral homeotic protein PMADS 2	AT5G20240.1	K-box region and MADS-box transcription factor family protein  	LOC_Os05g34940.2	"OsMADS4 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g154110.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.205555.1.S1_s_at	A	A2TS	POPTR_0002s07920	POPTR_0002s07920 (11)//POPTR_0005s20480 (11)	scaffold_2:5450928-5452306(+) (11)//scaffold_5:19533623-19535047(-) (11)	NA	Q07474	Floral homeotic protein PMADS 2	AT5G20240.1	K-box region and MADS-box transcription factor family protein  	LOC_Os05g34940.2	"OsMADS4 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g154110.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.205556.1.S1_s_at	A	A1TS	POPTR_0005s20490	POPTR_0005s20490 (11)	scaffold_5:19548755-19549210(+) (11)	NA	NA	NA	AT1G21610.1	wound-responsive family protein 	LOC_Os05g34900.2	"wound-responsive family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205557.1.S1_at	A	A1TS	POPTR_0005s20500	POPTR_0005s20500 (10)	scaffold_5:19555755-19556761(+) (10)	NA	Q800K6	DNA topoisomerase 2-binding protein 1-A	AT1G77320.1	transcription coactivators 	LOC_Os11g08660.1	"TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed"	Medtr7g108190.1	BRCT 	NA	NA	GO:0005622|intracellular
PtpAffx.205558.1.S1_at	A	A1TS	POPTR_0005s20510	POPTR_0005s20510 (10)	scaffold_5:19564378-19565438(+) (10)	NA	Q9C5W3	"NAD kinase 2, chloroplastic"	AT1G21640.1	NAD kinase 2 	LOC_Os11g08670.1	"NAD kinase, putative, expressed"	Medtr4g104490.1	ATP-NAD/AcoX kinase 	GO:0008152|metabolic process	GO:0003951|NAD+ kinase activity	NA
PtpAffx.205559.1.S1_at	A	A1TS	POPTR_0005s20550	POPTR_0005s20550 (11)	scaffold_5:19614376-19615677(+) (11)	NA	Q3ED78	Zinc finger CCCH domain-containing protein 7	AT1G21580.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os06g43120.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205560.1.S1_at	A	A1TS	POPTR_0005s20570	POPTR_0005s20570 (11)	scaffold_5:19619265-19620088(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205561.1.S1_at	A	A1TS	POPTR_0005s20580	POPTR_0005s20580 (11)	scaffold_5:19622243-19622484(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205562.1.S1_at	A	A1TS	POPTR_0005s20590	POPTR_0005s20590 (11)	scaffold_5:19626514-19626947(+) (11)	NA	Q9LPK5	Probable calcium-binding protein CML44	AT1G21550.1	Calcium-binding EF-hand family protein 	LOC_Os12g12730.1	"OsCML28 - Calmodulin-related calcium sensor protein, expressed"	Medtr1g037320.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205563.1.S1_x_at	A	A1TS	POPTR_0005s20600	POPTR_0005s20600 (11)	scaffold_5:19640204-19640976(+) (11)	NA	Q8CFV9	Riboflavin kinase	AT4G21470.1	riboflavin kinase/FMN hydrolase 	LOC_Os10g32730.1	"haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed"	Medtr4g125160.1	"HAD-superfamily hydrolase subfamily IA, variant 3; Epoxide hydrolase N-terminal domain-like phosphatase "	GO:0009231|riboflavin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0008531|riboflavin kinase activity	NA
PtpAffx.205564.1.S1_at	A	A1TS	POPTR_0005s20620	POPTR_0005s20620 (11)	scaffold_5:19658211-19658626(+) (11)	NA	Q6PDK2	Histone-lysine N-methyltransferase MLL2	AT1G77250.1	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os08g01420.1	"PHD-finger domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205565.1.S1_at	A	A1TS	POPTR_0005s20630	POPTR_0005s20630 (9)	scaffold_5:19659484-19660453(-) (11)	NA	Q8W013	Caffeic acid 3-O-methyltransferase	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.205566.1.S1_at	A	A1TS	POPTR_0005s20650	POPTR_0005s20650 (11)	scaffold_5:19741487-19742345(+) (11)	NA	Q0JH50	Gibberellin 20 oxidase 2	AT5G51810.1	gibberellin 20 oxidase 2 	LOC_Os01g66100.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr3g143130.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.205567.1.S1_at	A	A1MS	POPTR_0005s20670	POPTR_0005s20670 (11)	scaffold_5:19795945-19796415(-) (11)	NA	Q0WT31	Probable methyltransferase PMT25	AT2G34300.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.205568.1.S1_at	A	A1TS	POPTR_0005s20680	POPTR_0005s20680 (11)	scaffold_5:19802733-19803284(+) (11)	NA	NA	NA	AT1G31130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os08g01590.2	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205569.1.S1_s_at	A	A1TS	POPTR_0005s20700	POPTR_0005s20700 (11)	scaffold_5:19823671-19823724(+) (11)	POPTR_0002s07620 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20557.2.S1_a_at	A	A1TS	POPTR_0014s03190	POPTR_0014s03190 (11)	scaffold_14:2560256-2560740(+) (11)	NA	NA	NA	AT1G47410.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages. 	NA	NA	Medtr1g024830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205570.1.S1_at	A	A2TS	POPTR_0005s20720	POPTR_0186s00210 (11)//POPTR_0005s20720 (11)	scaffold_186:12175-13516(-) (11)//scaffold_5:19867219-19868558(+) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g37456.2	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr5g074190.1	"Peptidase aspartic, active site; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.205572.1.S1_at	A	A1TS	POPTR_0005s20740	POPTR_0005s20740 (11)	scaffold_5:19890349-19890857(+) (11)	NA	Q9LP03	"Pentatricopeptide repeat-containing protein At1g43980, mitochondrial"	AT1G43980.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g32090.1	"pentatricopeptide, putative"	Medtr3g143210.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205574.1.S1_at	A	A1TS	POPTR_0005s20790	POPTR_0005s20790 (11)	scaffold_5:19942751-19945002(+) (11)	NA	NA	NA	AT1G76990.5	ACT domain repeat 3 	LOC_Os02g34990.2	"ACT domain containing protein, putative, expressed"	Medtr7g022460.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.205574.1.S1_s_at	A	A2TS	POPTR_0002s07550	POPTR_0002s07550 (11)//POPTR_0005s20790 (11)	scaffold_2:5151156-5153235(-) (11)//scaffold_5:19942826-19945084(+) (11)	NA	NA	NA	AT1G76990.5	ACT domain repeat 3 	LOC_Os02g34990.2	"ACT domain containing protein, putative, expressed"	Medtr5g049410.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.205574.1.S1_x_at	A	A1TS	POPTR_0005s20790	POPTR_0005s20790 (11)	scaffold_5:19942751-19945002(+) (11)	NA	NA	NA	AT1G76990.5	ACT domain repeat 3 	LOC_Os02g34990.2	"ACT domain containing protein, putative, expressed"	Medtr7g022460.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.205575.1.S1_at	A	A1TS	POPTR_0005s20810	POPTR_0005s20810 (11)	scaffold_5:19957077-19958480(-) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT1G77020.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os02g35000.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.205576.1.S1_at	A	A1TS	POPTR_0005s20820	POPTR_0005s20820 (11)	scaffold_5:19964649-19965231(-) (11)	NA	O49289	Putative DEAD-box ATP-dependent RNA helicase 29	AT1G77030.1	"hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases "	LOC_Os08g32090.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr4g109140.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.205577.1.S1_at	A	A1TS	POPTR_0005s20840	POPTR_0005s20840 (11)	scaffold_5:19981322-19982657(+) (11)	NA	Q9LPL3	Putative flavin-containing monooxygenase YUCCA11	AT1G21430.1	Flavin-binding monooxygenase family protein 	LOC_Os11g10170.1	"flavin monooxygenase, putative"	Medtr5g034600.1	"Monooxygenase, FAD-binding; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205578.1.S1_at	A	A1TS	POPTR_0005s20860	POPTR_0005s20860 (11)	scaffold_5:20001588-20001887(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205579.1.S1_at	A	A1TS	POPTR_0005s20870	POPTR_0005s20870 (11)	scaffold_5:20003668-20004221(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr5g044760.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205580.1.S1_at	A	A1TS	POPTR_0005s20900	POPTR_0005s20900 (11)	scaffold_5:20023533-20025419(-) (11)	NA	Q8L7M4	Small RNA degrading nuclease 5	AT5G25800.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os12g08740.1	"exonuclease, putative, expressed"	Medtr1g027960.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205581.1.S1_at	A	A1TS	POPTR_0005s20950	POPTR_0005s20950 (11)	scaffold_5:20060280-20060509(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205583.1.S1_at	A	A1TS	POPTR_0005s20990	POPTR_0005s20990 (11)	scaffold_5:20123387-20124390(+) (11)	NA	Q9SQH6	Probable auxin efflux carrier component 6	AT1G77110.1	Auxin efflux carrier family protein 	LOC_Os11g04190.1	"auxin efflux carrier component, putative, expressed"	Medtr4g154810.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.205584.1.S1_at	A	A1TS	POPTR_0005s21000	POPTR_0005s21000 (11)	scaffold_5:20128514-20128995(-) (11)	NA	Q84VY3	"Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic"	AT1G43800.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os01g65830.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr3g125150.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0045300|acyl-[acyl-carrier-protein] desaturase activity	NA
PtpAffx.205584.1.S1_s_at	A	A1TS	POPTR_0005s21000	POPTR_0005s21000 (11)	scaffold_5:20128615-20128970(-) (11)	NA	Q84VY3	"Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic"	AT1G43800.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os01g65830.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr3g125150.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0045300|acyl-[acyl-carrier-protein] desaturase activity	NA
PtpAffx.205585.1.S1_at	A	A1MS	POPTR_0005s21010	POPTR_0005s21010 (9)	scaffold_5:20133834-20135484(-) (9)	NA	Q9FH05	Serine carboxypeptidase-like 42	AT5G42240.1	serine carboxypeptidase-like 42 	LOC_Os11g10750.1	"OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr5g080870.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.205586.1.S1_at	A	A1TS	POPTR_0005s21020	POPTR_0005s21020 (11)	scaffold_5:20143951-20144481(-) (11)	NA	Q9SS83	"Pentatricopeptide repeat-containing protein At3g09040, mitochondrial"	AT3G09040.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g43430.3	"pentatricopeptide, putative, expressed"	Medtr7g015730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205587.1.S1_s_at	A	A1TS	POPTR_0005s21030	POPTR_0005s21030 (11)	scaffold_5:20147637-20148086(-) (11)	NA	O15488	Glycogenin-2	AT1G77130.1	plant glycogenin-like starch initiation protein 2 	LOC_Os01g65780.2	"glycosyl transferase, putative, expressed"	Medtr3g143690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.205589.1.S1_at	A	A1TS	POPTR_0005s21050	POPTR_0005s21050 (11)	scaffold_5:20170224-20170875(-) (11)	NA	NA	NA	AT1G77160.1	Protein of unknown function (DUF506)  	LOC_Os01g65740.1	plant-specific domain TIGR01615 family protein	Medtr4g142510.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205590.1.S1_at	A	A1TS	POPTR_0005s21060	POPTR_0005s21060 (11)	scaffold_5:20182416-20183030(+) (11)	NA	Q6GQE1	Transmembrane protein 184C	AT1G77220.1	Protein of unknown function (DUF300) 	LOC_Os05g44080.1	"transmembrane protein, putative, expressed"	Medtr3g164030.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205591.1.S1_at	A	A1TS	POPTR_0005s21090	POPTR_0005s21090 (11)	scaffold_5:20220858-20221639(+) (11)	NA	Q38890	Endoglucanase 25	AT5G49720.1	glycosyl hydrolase 9A1 	LOC_Os03g52630.1	"endoglucanase, putative, expressed"	Medtr3g124880.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.205592.1.S1_at	A	A1TS	POPTR_0005s21100	POPTR_0005s21100 (11)	scaffold_5:20222737-20223080(-) (11)	NA	NA	NA	AT3G21260.3	Glycolipid transfer protein (GLTP) family protein 	LOC_Os04g35790.3	"GLTP domain containing protein, putative, expressed"	Medtr3g124890.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.205594.1.S1_at	A	A1MS	POPTR_0005s21150	POPTR_0005s21150 (11)	scaffold_5:20288241-20289612(+) (11)	NA	Q42556	"ATPase 9, plasma membrane-type"	AT1G80660.1	H(+)-ATPase 9 	LOC_Os05g25550.1	"E1-E2 ATPase domain containing protein, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205595.1.S1_at	A	A1TS	POPTR_0005s21160	POPTR_0005s21160 (11)	scaffold_5:20301180-20301667(+) (11)	NA	Q8LGD5	Protein MKS1	AT1G21326.1	VQ motif-containing protein 	LOC_Os02g33600.1	"VQ domain containing protein, putative"	Medtr3g125080.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205596.1.S1_at	A	A1TS	POPTR_0005s21170	POPTR_0005s21170 (11)	scaffold_5:20305663-20306538(-) (11)	NA	NA	NA	AT1G43770.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os12g06480.2	"PHD-finger family protein, expressed"	Medtr6g043480.1	"Zinc finger, C2H2-type; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205597.1.S1_at	A	A1TS	POPTR_0005s21180	POPTR_0005s21180 (11)	scaffold_5:20317706-20318192(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G42120.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g17490.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205598.1.S1_at	A	A1TS	POPTR_0005s21210	POPTR_0005s21210 (11)	scaffold_5:20330185-20330688(-) (11)	NA	Q9LSA6	U-box domain-containing protein 29	AT3G18710.1	plant U-box 29 	LOC_Os02g33680.1	"U-box domain containing protein, expressed"	Medtr4g142430.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.205599.1.S1_at	A	A1TS	POPTR_0005s21220	POPTR_0005s21220 (11)	scaffold_5:20340311-20340542(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g125650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2056.1.A1_at	A	A1TS	POPTR_0005s28030	POPTR_0005s28030 (11)	scaffold_5:25432539-25432891(+) (11)	NA	NA	NA	AT2G33570.1	Domain of unknown function (DUF23) 	LOC_Os06g22330.1	expressed protein	CU179634_27.1	Protein of unknown function DUF23 CU179634.6 94484-96282 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205600.1.S1_at	A	A1TS	POPTR_0005s21230	POPTR_0005s21230 (11)	scaffold_5:20343167-20343981(-) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G42140.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os04g58960.1	"regulator of chromosome condensation, putative, expressed"	Medtr1g125660.1	"Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205601.1.S1_at	A	A1TS	POPTR_0005s21240	POPTR_0005s21240 (9)	scaffold_5:20368251-20368346(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205602.1.S1_at	A	A1TS	POPTR_0005s21250	POPTR_0005s21250 (11)	scaffold_5:20374184-20376990(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os12g06670.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205603.1.S1_at	A	A1TS	POPTR_0005s21260	POPTR_0005s21260 (11)	scaffold_5:20393909-20394437(+) (11)	NA	Q5NE24	Nodulation-signaling pathway 2 protein	AT4G08250.1	GRAS family transcription factor 	LOC_Os03g15680.1	"nodulation-signaling pathway 2 protein, putative"	Medtr4g142290.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205604.1.S1_at	A	A1TS	POPTR_0005s21290	POPTR_0005s21290 (11)	scaffold_5:20406122-20406174(-) (11)	NA	NA	NA	AT4G37130.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr5g018450.1	"nucleoporin-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205604.1.S1_x_at	A	A1TS	POPTR_0005s21290	POPTR_0005s21290 (11)	scaffold_5:20406122-20406274(-) (11)	NA	NA	NA	AT4G37130.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr5g018450.1	"nucleoporin-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205605.1.S1_at	A	A1TS	POPTR_0005s21340	POPTR_0005s21340 (11)	scaffold_5:20438578-20438986(-) (11)	NA	NA	NA	AT2G31290.2	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os06g15550.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative"	Medtr3g029070.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205606.1.S1_at	A	A1TS	POPTR_0005s21345	POPTR_0005s21345 (11)	scaffold_5:20441582-20443127(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205607.1.S1_at	A	A1TS	POPTR_0005s21390	POPTR_0005s21390 (11)	scaffold_5:20495115-20495575(+) (11)	NA	NA	NA	AT1G21200.1	sequence-specific DNA binding transcription factors 	LOC_Os12g06640.2	"homeodomain, putative, expressed"	Medtr1g125320.1	"Homeodomain-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205608.1.S1_at	A	A1TS	POPTR_0005s21410	POPTR_0005s21410 (11)	scaffold_5:20511681-20512167(+) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76880.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205609.1.S1_at	A	A1TS	POPTR_0005s21420	POPTR_0005s21420 (11)	scaffold_5:20517829-20518376(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205610.1.S1_at	A	A1TS	POPTR_0005s21430	POPTR_0005s21430 (11)	scaffold_5:20546028-20547647(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G43650.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g01570.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr6g038970.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.205611.1.S1_at	A	A1TS	POPTR_0005s21480	POPTR_0005s21480 (11)	scaffold_5:20619993-20620564(-) (11)	NA	NA	NA	AT1G76770.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr1g125090.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205612.1.S1_at	A	A1TS	POPTR_0005s21500	POPTR_0005s21500 (11)	scaffold_5:20630586-20630997(-) (11)	NA	P42777	G-box-binding factor 4	AT5G44080.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g64730.1	"bZIP transcription factor domain containing protein, expressed"	Medtr1g125010.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.205613.1.S1_at	A	A1TS	POPTR_0005s21510	POPTR_0005s21510 (11)	scaffold_5:20646408-20646798(+) (11)	NA	Q6DYE5	UPF0496 protein At1g20180	AT1G20180.1	Protein of unknown function (DUF677) 	LOC_Os04g34590.1	"UPF0496 protein 2, putative"	Medtr1g126660.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205614.1.S1_at	A	A1TS	POPTR_0005s21530	POPTR_0005s21530 (11)	scaffold_5:20664932-20665605(-) (11)	NA	Q39962	Citrate-binding protein	NA	NA	LOC_Os12g07310.1	"citrate-binding protein precursor, putative, expressed"	Medtr6g041160.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205615.1.S1_s_at	A	A1TS	POPTR_0013s08210	POPTR_0013s08210 (9)	scaffold_13:7225157-7225429(+) (9)	NA	O65001	Protein terminal ear1	AT3G26120.1	terminal EAR1-like 1 	LOC_Os01g68000.1	"AML1, putative, expressed"	Medtr4g096760.1	RNA recognition motif 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205616.1.S1_at	A	A1TS	POPTR_0005s21630	POPTR_0005s21630 (11)	scaffold_5:20737323-20737404(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205616.1.S1_s_at	A	A1TS	POPTR_0005s21630	POPTR_0005s21630 (11)	scaffold_5:20737391-20737895(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205618.1.S1_at	A	A1TS	POPTR_0005s21630	POPTR_0005s21630 (11)	scaffold_5:20735574-20736215(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205619.1.S1_at	A	A1TS	POPTR_0005s21680	POPTR_0005s21680 (11)	scaffold_5:20780104-20781386(+) (11)	NA	Q9SJ20	Ribonucleoside-diphosphate reductase large subunit	AT2G21790.1	ribonucleotide reductase 1 	LOC_Os06g07210.1	"ribonucleoside-diphosphate reductase large subunit, putative, expressed"	Medtr4g141590.1	"Ribonucleotide reductase R1 subunit, N-terminal; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0055114|oxidation reduction	GO:0005524|ATP binding||GO:0004748|ribonucleoside-diphosphate reductase activity	GO:0005971|ribonucleoside-diphosphate reductase complex
PtpAffx.205620.1.S1_at	A	A1TS	POPTR_0005s21700	POPTR_0005s21700 (11)	scaffold_5:20807512-20808041(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.205621.1.S1_at	A	A1TS	POPTR_0005s21720	POPTR_0005s21720 (11)	scaffold_5:20831449-20831712(+) (11)	NA	Q84WW6	Histone-lysine N-methyltransferase ASHH1	AT1G76710.2	SET domain group 26 	LOC_Os04g34976.2	"SET domain containing protein, expressed"	Medtr1g124410.1	Nuclear protein SET; SET-related region; AWS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205622.1.S1_at	A	A1TS	POPTR_0005s21770	POPTR_0005s21770 (11)	scaffold_5:20870486-20870724(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205623.1.S1_at	A	A1TS	POPTR_0005s21850	POPTR_0005s21850 (11)	scaffold_5:20910463-20910732(-) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G09810.1	Nucleotide-sugar transporter family protein 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr1g124720.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205624.1.S1_at	A	A1TS	POPTR_0005s21870	POPTR_0005s21870 (9)	scaffold_5:20920314-20920542(-) (9)	NA	Q9SQI2	Protein GIGANTEA	AT1G22770.1	gigantea protein (GI) 	LOC_Os01g08700.6	"GIGANTEA, putative, expressed"	Medtr1g124650.2	"Protein GIGANTEA, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205625.1.S1_at	A	A1TS	POPTR_0005s21880	POPTR_0005s21880 (10)	scaffold_5:20949401-20949720(+) (11)	NA	NA	NA	AT5G27780.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37490.1	OsSAUR54 - Auxin-responsive SAUR gene family member	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205626.1.S1_at	A	A1TS	POPTR_0005s21890	POPTR_0005s21890 (11)	scaffold_5:20955071-20957537(+) (11)	NA	O89001	Carboxypeptidase D	AT1G71696.1	"carboxypeptidase D, putative "	LOC_Os06g05240.1	"zinc carboxypeptidase family protein, putative, expressed"	Medtr1g124630.1	"Peptidase M14, carboxypeptidase A; Carboxypeptidase regulatory region "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004181|metallocarboxypeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.205627.1.S1_at	A	A1TS	POPTR_0005s21900	POPTR_0005s21900 (10)	scaffold_5:20957991-20958220(-) (10)	NA	P31757	Alliin lyase	AT1G34040.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g52010.1	"alliin lyase precursor, putative, expressed"	Medtr3g114550.1	"Allinase, C-terminal; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205628.1.S1_at	A	A1TS	POPTR_0005s21920	POPTR_0005s21920 (10)	scaffold_5:20968080-20968495(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205629.1.S1_at	A	A1TS	POPTR_0005s21930	POPTR_0005s21930 (11)	scaffold_5:20970734-20970889(-) (11)	NA	P46523	"ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment)"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr3g079920.1	"AAA ATPase, central region; Clp, N terminal "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.205629.1.S1_s_at	A	A1TS	POPTR_0005s21930	POPTR_0005s21930 (11)	scaffold_5:20970319-20970733(-) (11)	NA	P46523	"ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment)"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr3g079920.1	"AAA ATPase, central region; Clp, N terminal "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.205630.1.S1_at	A	A1TS	POPTR_0005s21940	POPTR_0005s21940 (11)	scaffold_5:20978824-20980706(+) (11)	NA	Q9Y259	Choline/ethanolamine kinase	AT4G09760.1	Protein kinase superfamily protein 	LOC_Os01g51920.1	"phosphotransferase, putative, expressed"	Medtr3g005000.1	"Choline kinase, N-terminal; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205631.1.S1_at	A	A1TS	POPTR_0005s21960	POPTR_0005s21960 (11)	scaffold_5:20981173-20981236(-) (11)	NA	A6QP05	Dehydrogenase/reductase SDR family member 12	AT4G09750.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g39040.1	"dehydrogenase/reductase SDR family member 12, putative, expressed"	Medtr6g035840.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.205632.1.S1_at	A	A1TS	POPTR_0005s21970	POPTR_0005s21970 (11)	scaffold_5:20989982-20991918(-) (11)	NA	Q84MA2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 1"	AT1G71710.2	DNAse I-like superfamily protein 	LOC_Os01g51890.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g035970.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205633.1.S1_at	A	A1TS	POPTR_0005s21980	POPTR_0005s21980 (11)	scaffold_5:21008828-21009365(+) (11)	NA	P74142	30S ribosomal protein S1 homolog B	AT1G71720.1	Nucleic acid-binding proteins superfamily 	LOC_Os01g40640.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.205634.1.S1_at	A	A1TS	POPTR_0005s21990	POPTR_0005s21990 (9)	scaffold_5:21021734-21022216(+) (9)	NA	C0LGF5	Probable LRR receptor-like serine/threonine-protein kinase At1g34110	AT1G34110.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os06g38990.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr5g048490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.205634.1.S1_s_at	A	A1TS	POPTR_0005s21990	POPTR_0005s21990 (11)	scaffold_5:21022231-21022460(+) (11)	POPTR_0002s06380 (7)	C0LGF5	Probable LRR receptor-like serine/threonine-protein kinase At1g34110	AT1G34110.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os06g38990.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr5g048490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.205635.1.S1_s_at	A	A1TS	POPTR_0005s22010	POPTR_0005s22010 (11)	scaffold_5:21030360-21030714(+) (11)	NA	NA	NA	AT1G71740.1	unknown protein; Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g11950.1	conserved hypothetical protein	AC233576_29.1	hypothetical protein AC233576.2 89809-90407 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205636.1.S1_at	A	A1TS	POPTR_0005s22020	POPTR_0005s22020 (11)	scaffold_5:21031204-21032744(-) (11)	NA	Q56X76	DEAD-box ATP-dependent RNA helicase 39	AT4G09730.1	RH39 	LOC_Os01g08930.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC233576_30.1	ATP-requiring DNA helicase RecQ; ; AC233576.2 98142-90615 E EGN_Mt090430 200	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.205637.1.S1_s_at	A	A1TS	POPTR_0005s22040	POPTR_0005s22040 (9)	scaffold_5:21050126-21051311(-) (10)	NA	O64380	Polyadenylate-binding protein 3	AT1G22760.1	poly(A) binding protein 3 	LOC_Os08g22354.2	"polyadenylate-binding protein, putative, expressed"	AC233576_3.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 AC233576.2 6823-10801 H EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.205638.1.S1_s_at	A	A1TS	POPTR_0005s22040	POPTR_0005s22040 (11)	scaffold_5:21053853-21053946(-) (11)	NA	O64380	Polyadenylate-binding protein 3	AT1G22760.1	poly(A) binding protein 3 	LOC_Os08g22354.2	"polyadenylate-binding protein, putative, expressed"	AC233576_3.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 AC233576.2 6823-10801 H EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.205640.1.S1_at	A	A1TS	POPTR_0005s22110	POPTR_0005s22110 (11)	scaffold_5:21095142-21095708(-) (11)	NA	Q98TX3	Programmed cell death protein 4	AT1G22730.1	MA3 domain-containing protein 	LOC_Os03g12180.1	"MA3 domain containing protein, expressed"	Medtr6g033390.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205641.1.S1_x_at	A	A1TS	POPTR_0005s22120	POPTR_0005s22120 (11)	scaffold_5:21099078-21100359(+) (11)	NA	Q9JI38	tRNA pseudouridine synthase 3	AT1G34150.1	Pseudouridine synthase family protein 	LOC_Os03g26440.1	"tRNA pseudouridine synthase family protein, putative"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.205642.1.S1_at	A	A1TS	POPTR_0005s22120	POPTR_0005s22120 (11)	scaffold_5:21100886-21103259(+) (11)	NA	Q9JI38	tRNA pseudouridine synthase 3	AT1G34150.1	Pseudouridine synthase family protein 	LOC_Os03g26440.1	"tRNA pseudouridine synthase family protein, putative"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.205643.1.S1_at	A	A1TS	POPTR_0005s22150	POPTR_0005s22150 (11)	scaffold_5:21117525-21118086(+) (11)	NA	Q9FX24	Pentatricopeptide repeat-containing protein At1g34160	AT1G34160.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g17080.1	"pentatricopeptide, putative, expressed"	Medtr4g154400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205644.1.S1_at	A	A1TS	POPTR_0005s22180	POPTR_0005s22180 (11)	scaffold_5:21151590-21152088(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT1G34190.1	NAC domain containing protein 17 	LOC_Os09g32040.1	"no apical meristem protein, putative, expressed"	Medtr5g084760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.205646.1.S1_s_at	A	A2TS	POPTR_0005s22200	POPTR_0005s22200 (11)//POPTR_0005s22210 (11)	scaffold_5:21165281-21165665(+) (11)//scaffold_5:21182822-21183205(+) (11)	NA	Q9SZ83	Uncharacterized oxidoreductase At4g09670	AT4G09670.1	Oxidoreductase family protein 	LOC_Os10g26400.2	"uncharacterized oxidoreductase, putative, expressed"	Medtr3g087060.1	"Oxidoreductase, N-terminal "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.205648.1.S1_at	A	A1MA	POPTR_0005s22290	POPTR_0005s22290 (10)	scaffold_5:21261482-21262418(+) (11)	NA	P38812	"Phosphatidylglycerophosphatase GEP4, mitochondrial"	AT3G58830.1	haloacid dehalogenase (HAD) superfamily protein 	LOC_Os01g58390.1	"haloacid dehalogenase, putative, expressed"	Medtr3g111100.1	HAD-superfamily phosphatase subfamily IIIA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205649.1.S1_at	A	A1TS	POPTR_0005s22310	POPTR_0005s22310 (11)	scaffold_5:21274685-21276820(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205649.1.S1_s_at	A	A1TS	POPTR_0005s22310	POPTR_0005s22310 (11)	scaffold_5:21274730-21276728(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205650.1.S1_s_at	A	A1TS	POPTR_0005s22320	POPTR_0005s22320 (11)	scaffold_5:21279334-21279422(-) (11)	NA	NA	NA	AT1G06530.1	Tropomyosin-related 	NA	NA	Medtr5g099020.1	myosin heavy chain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205650.1.S1_x_at	A	A1TS	POPTR_0005s22320	POPTR_0005s22320 (11)	scaffold_5:21279344-21279931(-) (11)	NA	NA	NA	AT1G06530.1	Tropomyosin-related 	NA	NA	Medtr5g099020.1	myosin heavy chain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205651.1.S1_at	A	A1TS	POPTR_0005s22330	POPTR_0005s22330 (11)	scaffold_5:21286457-21286760(-) (11)	NA	NA	NA	AT3G58850.1	phy rapidly regulated 2 	NA	NA	Medtr5g099000.1	"PAR2 ; transcription regulator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205653.1.S1_at	A	A1TS	POPTR_0005s22350	POPTR_0005s22350 (11)	scaffold_5:21299411-21300739(-) (11)	NA	Q9SJG9	Mitogen-activated protein kinase 20	AT2G42880.1	MAP kinase 20 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr3g119710.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205654.1.S1_at	A	A1TS	POPTR_0005s22360	POPTR_0005s22360 (11)	scaffold_5:21317099-21318252(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205655.1.S1_at	A	A1TS	POPTR_0005s22390	POPTR_0005s22390 (11)	scaffold_5:21347462-21348001(+) (11)	NA	Q9SHJ5	Glycerol-3-phosphate acyltransferase 1	AT1G06520.1	glycerol-3-phosphate acyltransferase 1 	LOC_Os01g44069.1	"glycerol-3-phosphate acyltransferase, putative, expressed"	Medtr5g098930.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.205656.1.S1_at	A	A1TS	POPTR_0005s22420	POPTR_0005s22420 (11)	scaffold_5:21361330-21361926(-) (11)	NA	NA	NA	AT1G06320.1	unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g19540.1	expressed protein	AC233675_17.1	hypothetical protein AC233675.1 81646-80753 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205657.1.S1_at	A	A1TS	POPTR_0005s22430	POPTR_0005s22430 (11)	scaffold_5:21366220-21366784(+) (11)	NA	Q9SJG6	"Pentatricopeptide repeat-containing protein At2g42920, chloroplastic"	AT2G42920.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os03g43470.1	"pentatricopeptide, putative, expressed"	Medtr5g098900.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205658.1.S1_at	A	A1TS	POPTR_0005s22440	POPTR_0005s22440 (11)	scaffold_5:21367442-21367892(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT2G42940.1	Predicted AT-hook DNA-binding family protein 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	Medtr5g098890.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205659.1.S1_at	A	A1MS	POPTR_0005s22450	POPTR_0005s22450 (9)	scaffold_5:21368945-21371456(-) (9)	NA	NA	NA	AT1G29370.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os01g47430.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr4g136700.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205660.1.S1_at	A	A1TS	POPTR_0005s22490	POPTR_0005s22490 (11)	scaffold_5:21411053-21411318(-) (11)	NA	Q9SJG2	Probable receptor-like protein kinase At2g42960	AT3G59110.1	Protein kinase superfamily protein 	LOC_Os10g35450.1	"serine/threonine-protein kinase, putative, expressed"	Medtr3g061780.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205660.1.S1_x_at	A	A1TS	POPTR_0005s22490	POPTR_0005s22490 (11)	scaffold_5:21411053-21411477(-) (11)	NA	Q9SJG2	Probable receptor-like protein kinase At2g42960	AT3G59110.1	Protein kinase superfamily protein 	LOC_Os10g35450.1	"serine/threonine-protein kinase, putative, expressed"	Medtr3g061780.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205661.1.S1_at	A	A1TS	POPTR_0005s22500	POPTR_0005s22500 (9)	scaffold_5:21419667-21420224(-) (9)	NA	Q9C9L5	Wall-associated receptor kinase-like 9	AT1G69730.1	Wall-associated kinase family protein 	LOC_Os08g39210.1	"OsWAK74 - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205663.1.S1_at	A	A1TS	POPTR_0005s22510	POPTR_0005s22510 (11)	scaffold_5:21431931-21433182(-) (11)	NA	Q9SHJ3	Callose synthase 7	AT1G06490.1	glucan synthase-like 7 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.205664.1.S1_at	A	A1TS	POPTR_0005s22540	POPTR_0005s22540 (10)	scaffold_5:21460035-21460494(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205665.1.S1_at	A	A1TA	POPTR_0005s22550	POPTR_0005s22550 (11)	scaffold_5:21468524-21468691(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205666.1.S1_at	A	A1TS	POPTR_0005s22570	POPTR_0005s22570 (11)	scaffold_5:21482383-21483633(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g061560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205667.1.S1_s_at	A	A1TS	POPTR_0005s22600	POPTR_0005s22600 (11)	scaffold_5:21508698-21509183(-) (11)	NA	NA	NA	AT4G18260.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os05g49040.1	expressed protein	Medtr3g061440.1	Cytochrome b561 / ferric reductase transmembrane 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205668.1.S1_at	A	A1TS	POPTR_0005s22630	POPTR_0005s22630 (11)	scaffold_5:21537065-21537561(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G59080.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g21040.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr5g098350.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205669.1.S1_at	A	A1TS	POPTR_0005s22650	POPTR_0005s22650 (11)	scaffold_5:21567441-21569383(+) (11)	NA	Q7TS68	Putative methyltransferase NSUN6	AT1G06560.1	NOL1/NOP2/sun family protein 	LOC_Os08g27824.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr5g098320.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; PUA 	NA	GO:0003723|RNA binding	NA
PtpAffx.205670.1.S1_at	A	A1TS	POPTR_0005s22650	POPTR_0005s22650 (11)	scaffold_5:21571481-21573520(+) (11)	NA	Q7TS68	Putative methyltransferase NSUN6	AT1G06560.1	NOL1/NOP2/sun family protein 	LOC_Os08g27824.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr5g098320.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; PUA 	NA	GO:0003723|RNA binding	NA
PtpAffx.205671.1.S1_at	A	A1TS	POPTR_0005s22670	POPTR_0005s22670 (11)	scaffold_5:21579964-21580714(+) (11)	NA	Q67ZI9	GDSL esterase/lipase At2g42990	AT2G42990.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g04710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g092140.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.205672.1.S1_at	A	A1TS	POPTR_0005s22710	POPTR_0005s22710 (10)	scaffold_5:21597774-21600284(-) (10)	NA	Q9SK55	NAC domain-containing protein 42	AT2G43000.1	NAC domain containing protein 42 	LOC_Os03g56580.1	"no apical meristem protein, putative, expressed"	Medtr5g098180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.205673.1.S1_x_at	A	A1TS	POPTR_0005s22750	POPTR_0005s22750 (11)	scaffold_5:21654371-21654810(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G40260.1	Homeodomain-like superfamily protein 	LOC_Os03g03760.1	"MYB family transcription factor, putative, expressed"	Medtr4g134780.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205674.1.S1_at	A	A1TS	POPTR_0005s22770	POPTR_0005s22770 (11)	scaffold_5:21674522-21676131(-) (11)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.205675.1.S1_at	A	A1TS	POPTR_0005s22800	POPTR_0005s22800 (11)	scaffold_5:21693115-21693654(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g10550.1	"NBS-LRR disease resistance protein, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.205676.1.S1_at	A	A1TS	POPTR_0005s22810	POPTR_0005s22810 (11)	scaffold_5:21698494-21699060(-) (11)	NA	Q9H6S0	Probable ATP-dependent RNA helicase YTHDC2	AT2G30800.1	helicase in vascular tissue and tapetum 	LOC_Os01g56190.1	"HVT1, putative, expressed"	Medtr5g097550.1	"Single-stranded nucleic acid binding R3H; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.205679.1.S1_at	A	A1TS	POPTR_0005s22930	POPTR_0005s22930 (11)	scaffold_5:21795567-21795806(-) (11)	NA	Q6H6V4	Auxin response factor 6	AT1G30330.1	auxin response factor 6 	LOC_Os02g06910.1	"auxin response factor 6, putative, expressed"	Medtr2g022250.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.20568.1.S1_s_at	A	A1TS	POPTR_0001s38940	POPTR_0001s38940 (11)	scaffold_1:38192685-38192920(-) (11)	NA	Q9CQU8	Mitochondrial inner membrane protease subunit 1	AT1G53530.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os11g40500.3	"OsSigP7 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr8g043500.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205681.1.S1_at	A	A1TS	POPTR_0005s22970	POPTR_0005s22970 (11)	scaffold_5:21820402-21820762(+) (11)	NA	Q9XIN8	F-box protein At2g27310	AT2G27310.1	F-box family protein 	LOC_Os04g33820.1	"OsFBX132 - F-box domain containing protein, expressed"	Medtr1g086490.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205681.1.S1_x_at	A	A1TS	POPTR_0005s22970	POPTR_0005s22970 (11)	scaffold_5:21820403-21820762(+) (11)	NA	Q9XIN8	F-box protein At2g27310	AT2G27310.1	F-box family protein 	LOC_Os04g33820.1	"OsFBX132 - F-box domain containing protein, expressed"	Medtr1g086490.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205682.1.S1_at	A	A1TS	POPTR_0005s22990	POPTR_0005s22990 (11)	scaffold_5:21827027-21827382(-) (11)	NA	A4ZDL6	Antifungal protein ginkbilobin-2	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205683.1.S1_at	A	A1TS	POPTR_0005s23000	POPTR_0005s23000 (11)	scaffold_5:21831703-21832477(-) (11)	NA	Q9LS23	Aluminum-activated malate transporter 13	AT5G46600.1	Aluminium activated malate transporter family protein 	LOC_Os10g42180.1	"aluminum-activated malate transporter, putative, expressed"	Medtr5g014490.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205684.1.S1_at	A	A1TS	POPTR_0005s23020	POPTR_0005s23020 (10)	scaffold_5:21868994-21869290(+) (10)	NA	Q9FT81	Transcription factor TT8	AT4G09820.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os11g15210.1	"anthocyanin regulatory Lc protein, putative"	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.205685.1.S1_at	A	A1TS	POPTR_0005s23030	POPTR_0005s23030 (11)	scaffold_5:21871221-21872191(+) (11)	NA	NA	NA	AT1G03180.1	unknown protein; Has 36 Blast hits to 36 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g16250.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205686.1.S1_at	A	A1TS	POPTR_0005s23060	POPTR_0005s23060 (11)	scaffold_5:21889041-21890179(+) (11)	NA	Q5KEW5	Mitochondrial Rho GTPase 1	AT3G63150.1	MIRO-related GTP-ase 2 	LOC_Os03g59590.1	"ATP/GTP/Ca++ binding protein, putative, expressed"	Medtr1g086440.1	"Calcium-binding EF-hand; Ras small GTPase, Rab type; ; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.205687.1.S1_at	A	A1TS	POPTR_0005s23070	POPTR_0005s23070 (11)	scaffold_5:21902480-21903057(-) (11)	NA	NA	NA	AT1G03170.1	Protein of unknown function (DUF3049) 	LOC_Os03g49830.1	expressed protein	Medtr5g005940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205688.1.S1_at	A	A1TS	POPTR_0005s23090	POPTR_0005s23090 (11)	scaffold_5:21930666-21931264(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205689.1.S1_at	A	A1TS	POPTR_0005s23160	POPTR_0005s23160 (9)	scaffold_5:21964263-21965855(-) (11)	NA	O08764	Ankyrin repeat and BTB/POZ domain-containing protein 2	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.205691.1.S1_at	A	A1TS	POPTR_0005s23190	POPTR_0005s23190 (11)	scaffold_5:22032178-22033756(+) (11)	NA	O04408	"Ent-copalyl diphosphate synthase, chloroplastic"	AT4G02780.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os02g17780.1	"ent-kaurene synthase, chloroplast precursor, putative, expressed"	Medtr7g010960.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.205692.1.S1_at	A	A1TS	POPTR_0005s23210	POPTR_0005s23210 (11)	scaffold_5:22048193-22049847(-) (11)	NA	Q0WRC9	F-box protein SKIP17	AT4G02740.1	F-box/RNI-like superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205693.1.S1_at	A	A1TS	POPTR_0005s23220	POPTR_0005s23220 (9)	scaffold_5:22053803-22053835(-) (9)	NA	Q99633	Pre-mRNA-splicing factor 18	AT1G03140.1	splicing factor Prp18 family protein 	LOC_Os07g38420.1	"pre-mRNA-splicing factor, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0008380|RNA splicing	NA	GO:0005681|spliceosomal complex
PtpAffx.205694.1.S1_at	A	A1TS	POPTR_0005s23240	POPTR_0005s23240 (11)	scaffold_5:22066501-22066992(-) (11)	NA	NA	NA	AT5G28150.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr7g140620.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205695.1.S1_s_at	A	A2TS	POPTR_0005s23250	POPTR_0005s23250 (11)//POPTR_0002s05240 (9)	scaffold_2:3401429-3401576(+) (9)//scaffold_5:22077506-22077653(-) (11)	NA	Q4P4G8	UPF0396 protein UM04995	AT4G02720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g28220.1	"NFKB, putative, expressed"	AC235567_24.1	Protein of unknown function DUF926 AC235567.1 81779-83332 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205695.1.S1_x_at	A	A1TS	POPTR_0005s23250	POPTR_0005s23250 (11)	scaffold_5:22077255-22077670(-) (11)	NA	Q4P4G8	UPF0396 protein UM04995	AT4G02720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g28220.1	"NFKB, putative, expressed"	AC235567_24.1	Protein of unknown function DUF926 AC235567.1 81779-83332 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205696.1.S1_at	A	A1TS	POPTR_0005s23270	POPTR_0005s23270 (11)	scaffold_5:22098303-22100543(+) (11)	NA	NA	NA	AT5G36740.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	NA
PtpAffx.205697.1.S1_at	A	A1TS	POPTR_0005s23290	POPTR_0005s23290 (11)	scaffold_5:22108616-22109124(-) (11)	NA	NA	NA	AT2G32100.1	ovate family protein 16 	LOC_Os03g06350.1	"DUF623 domain containing protein, expressed"	Medtr1g086250.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205698.1.S1_s_at	A	A1TS	POPTR_0005s23300	POPTR_0005s23300 (11)	scaffold_5:22124213-22124753(+) (11)	NA	NA	NA	AT4G02715.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g084110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205699.1.S1_at	A	A1TS	POPTR_0005s23350	POPTR_0005s23350 (11)	scaffold_5:22157930-22158744(-) (11)	NA	Q9ZQI8	Non-specific lipid-transfer protein-like protein At2g13820	AT2G48130.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g07930.1	"LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g007090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2057.1.S1_s_at	A	A1TS	POPTR_0005s02810	POPTR_0005s02810 (11)	scaffold_5:1804477-1804536(+) (11)	NA	O24645	Anthranilate N-benzoyltransferase protein 1	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.205700.1.S1_at	A	A1TS	POPTR_0005s23370	POPTR_0005s23370 (11)	scaffold_5:22166192-22166737(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205701.1.S1_at	A	A1TS	POPTR_0005s23380	POPTR_0005s23380 (11)	scaffold_5:22169180-22169414(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205702.1.S1_x_at	A	A1TS	POPTR_0005s23390	POPTR_0005s23390 (9)	scaffold_5:22173549-22174246(+) (9)	NA	Q9SPL5	Vicilin-like antimicrobial peptides 2-1	AT3G22640.1	cupin family protein 	LOC_Os03g46100.1	"cupin domain containing protein, expressed"	Medtr1g084050.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.205703.1.S1_at	A	A1TS	POPTR_0005s23410	POPTR_0005s23410 (11)	scaffold_5:22178107-22178369(+) (11)	NA	Q9SA60	"Pentatricopeptide repeat-containing protein At1g03100, mitochondrial"	AT1G03100.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g28665.2	"PPR repeat domain containing protein, putative, expressed"	Medtr5g047540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205703.1.S1_s_at	A	A1TS	POPTR_0005s23410	POPTR_0005s23410 (11)	scaffold_5:22177784-22178276(+) (11)	NA	Q9SA60	"Pentatricopeptide repeat-containing protein At1g03100, mitochondrial"	AT1G03100.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g28665.2	"PPR repeat domain containing protein, putative, expressed"	Medtr5g047540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205704.1.S1_at	A	A1TS	POPTR_0005s23420	POPTR_0005s23420 (11)	scaffold_5:22181196-22184104(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205705.1.S1_at	A	A1TS	POPTR_0005s23440	POPTR_0005s23440 (11)	scaffold_5:22195872-22196812(-) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT3G63240.1	DNAse I-like superfamily protein 	LOC_Os03g57950.1	"type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed"	Medtr1g084030.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205706.1.S1_at	A	A1TS	POPTR_0005s23450	POPTR_0005s23450 (9)	scaffold_5:22212390-22212609(-) (10)	NA	Q54W07	Probable serine/threonine-protein kinase BUD32 homolog	AT5G26110.1	Protein kinase superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205707.1.S1_at	A	A1TS	POPTR_0005s23460	POPTR_0005s23460 (11)	scaffold_5:22213297-22213349(-) (11)	NA	Q9LMK5	CST complex subunit STN1	AT1G07130.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os03g25130.2	"OB-fold nucleic acid binding domain containing protein, putative, expressed"	Medtr5g020310.1	"nucleic acid binding, OB-fold, tRNA/helicase-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.205707.1.S1_s_at	A	A1TS	POPTR_0005s23460	POPTR_0005s23460 (11)	scaffold_5:22212873-22213253(-) (11)	NA	Q9LMK5	CST complex subunit STN1	AT1G07130.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os03g25130.2	"OB-fold nucleic acid binding domain containing protein, putative, expressed"	Medtr5g020310.1	"nucleic acid binding, OB-fold, tRNA/helicase-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.205708.1.S1_at	A	A1MS	POPTR_0005s23510	POPTR_0005s23510 (11)	scaffold_5:22253567-22253979(+) (11)	NA	NA	NA	AT1G03080.1	kinase interacting (KIP1-like) family protein 	LOC_Os10g28610.1	"KIP1, putative, expressed"	Medtr1g083940.1	KIP1-like 	NA	NA	GO:0016020|membrane
PtpAffx.205709.1.S1_at	A	A1TS	POPTR_0005s23520	POPTR_0005s23520 (10)	scaffold_5:22256152-22256689(-) (11)	NA	NA	NA	AT3G63270.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g07880.1	"trp repressor/replication initiator, putative, expressed"	Medtr2g114460.1	"Trp repressor/replication initiator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205710.1.S1_at	A	A1TS	POPTR_0005s23540	POPTR_0005s23540 (11)	scaffold_5:22271232-22271611(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205711.1.S1_at	A	A1TS	POPTR_0005s23550	POPTR_0005s23550 (11)	scaffold_5:22293681-22294165(+) (11)	NA	NA	NA	AT3G22810.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os03g43510.1	expressed protein	Medtr1g083880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205712.1.S1_at	A	A1TS	POPTR_0005s23560	POPTR_0005s23560 (11)	scaffold_5:22295291-22296379(-) (11)	NA	Q94A20	BI1-like protein	AT1G03070.2	Bax inhibitor-1 family protein 	LOC_Os03g53400.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr1g083870.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205713.1.S1_at	A	A1TS	POPTR_0005s23600	POPTR_0005s23600 (11)	scaffold_5:22324310-22324394(+) (11)	NA	Q8GY55	Protein TIFY 4B	AT4G14720.1	TIFY domain/Divergent CCT motif family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205713.1.S1_s_at	A	A1TS	POPTR_0005s23600	POPTR_0005s23600 (11)	scaffold_5:22322915-22324221(+) (11)	NA	Q8GY55	Protein TIFY 4B	AT4G14720.1	TIFY domain/Divergent CCT motif family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205715.1.S1_at	A	A1MS	POPTR_0005s23620	POPTR_0005s23620 (11)	scaffold_5:22338129-22338257(+) (11)	NA	Q9M1V8	Putative protein phosphatase 2C 50	AT3G63320.1	Protein phosphatase 2C family protein 	LOC_Os11g37540.1	"protein phosphatase 2C, putative, expressed"	Medtr1g083780.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205716.1.S1_at	A	A1TS	POPTR_0005s23630	POPTR_0005s23630 (11)	scaffold_5:22339914-22343079(-) (11)	NA	Q8RXY0	Probable inactive protein kinase At3g63330	AT3G63340.1	Protein phosphatase 2C family protein 	LOC_Os11g37540.1	"protein phosphatase 2C, putative, expressed"	Medtr1g083790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205717.1.S1_at	A	A1MS	POPTR_0005s23630	POPTR_0005s23630 (10)	scaffold_5:22348720-22349655(-) (11)	NA	Q8RXY0	Probable inactive protein kinase At3g63330	AT3G63340.1	Protein phosphatase 2C family protein 	LOC_Os11g37540.1	"protein phosphatase 2C, putative, expressed"	Medtr1g083790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205718.1.S1_at	A	A1MS	POPTR_0005s23670	POPTR_0005s23670 (9)	scaffold_5:22390676-22392179(-) (9)	NA	Q55DF5	JmjC domain-containing protein D	AT5G19840.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g56640.3	"transcription factor jumonji, putative, expressed"	Medtr1g083710.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205719.1.S1_at	A	A1TS	POPTR_0005s23670	POPTR_0005s23670 (10)	scaffold_5:22394745-22396014(-) (10)	NA	Q55DF5	JmjC domain-containing protein D	AT5G19840.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g56640.3	"transcription factor jumonji, putative, expressed"	Medtr1g083710.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205720.1.S1_at	A	A1TS	POPTR_0005s23680	POPTR_0005s23680 (11)	scaffold_5:22421941-22422036(+) (11)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205720.1.S1_x_at	A	A1TS	POPTR_0005s23680	POPTR_0005s23680 (11)	scaffold_5:22421941-22422130(+) (11)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205721.1.S1_at	A	A1TS	POPTR_0005s23690	POPTR_0005s23690 (11)	scaffold_5:22439856-22440448(+) (11)	NA	Q9M1V3	Pentatricopeptide repeat-containing protein At3g63370	AT3G63370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g39410.1	"pentatricopeptide, putative, expressed"	Medtr1g083640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205722.1.S1_at	A	A1TS	POPTR_0005s23710	POPTR_0005s23710 (11)	scaffold_5:22463923-22464421(-) (11)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.205723.1.S1_x_at	A	A1TS	POPTR_0005s23720	POPTR_0005s23720 (11)	scaffold_5:22478976-22479282(-) (11)	NA	O82018	Calmodulin	AT3G22930.1	calmodulin-like 11 	LOC_Os05g41210.1	"OsCam2 - Calmodulin, expressed"	Medtr1g083590.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205724.1.S1_s_at	A	A1TS	POPTR_0005s23720	POPTR_0005s23720 (11)	scaffold_5:22479701-22480103(-) (11)	NA	O82018	Calmodulin	AT3G22930.1	calmodulin-like 11 	LOC_Os05g41210.1	"OsCam2 - Calmodulin, expressed"	Medtr1g083590.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205725.1.S1_at	A	A1TS	POPTR_0005s23760	POPTR_0005s23760 (11)	scaffold_5:22507327-22509113(+) (11)	NA	NA	NA	AT3G63420.2	Ggamma-subunit 1 	LOC_Os02g04520.1	"AGG2, putative, expressed"	Medtr1g083530.1	"AGG2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205726.1.S1_at	A	A1TS	POPTR_0005s23780	POPTR_0005s23780 (11)	scaffold_5:22527651-22528163(+) (11)	NA	NA	NA	AT3G63430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 135 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os11g37670.1	expressed protein	Medtr1g083510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205728.1.S1_at	A	A1TS	POPTR_0005s23800	POPTR_0005s23800 (11)	scaffold_5:22541791-22542589(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205729.1.S1_at	A	A1TS	POPTR_0005s23820	POPTR_0005s23820 (10)	scaffold_5:22546845-22547039(+) (11)	NA	Q40545	"Pyruvate kinase isozyme A, chloroplastic"	AT3G22960.1	Pyruvate kinase family protein 	LOC_Os07g08340.2	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205730.1.S1_at	A	A1TS	POPTR_0005s23820	POPTR_0005s23820 (11)	scaffold_5:22548847-22549018(+) (11)	NA	Q40545	"Pyruvate kinase isozyme A, chloroplastic"	AT3G22960.1	Pyruvate kinase family protein 	LOC_Os07g08340.2	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205732.1.S1_at	A	A1TS	POPTR_0005s23860	POPTR_0005s23860 (9)	scaffold_5:22581680-22581916(-) (11)	NA	Q04050	NADH-ubiquinone oxidoreductase chain 4	ATMG00580.1	NADH dehydrogenase subunit 4 	LOC_Os12g34094.1	"NADH-ubiquinone oxidoreductase chain 4, putative"	Medtr1g005160.1	"NADH-ubiquinone oxidoreductase chain 4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205733.1.S1_at	A	A1TS	POPTR_0005s23870	POPTR_0005s23870 (11)	scaffold_5:22588757-22589093(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205733.1.S1_x_at	A	A1TS	POPTR_0005s23870	POPTR_0005s23870 (11)	scaffold_5:22588757-22589093(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205734.1.S1_at	A	A1TS	POPTR_0005s23880	POPTR_0005s23880 (11)	scaffold_5:22598336-22598999(+) (11)	NA	Q96PP9	Guanylate-binding protein 4	AT2G38840.1	Guanylate-binding family protein 	LOC_Os03g58240.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.205734.1.S1_x_at	A	A1TS	POPTR_0005s23880	POPTR_0005s23880 (11)	scaffold_5:22598338-22599595(+) (11)	NA	Q96PP9	Guanylate-binding protein 4	AT2G38840.1	Guanylate-binding family protein 	LOC_Os03g58240.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.205735.1.S1_at	A	A1TS	POPTR_0005s23890	POPTR_0005s23890 (10)	scaffold_5:22605140-22607103(+) (11)	NA	Q9AR19	Histone acetyltransferase GCN5	AT3G54610.1	histone acetyltransferase of the GNAT family 1 	LOC_Os10g28040.1	"histone acetyltransferase GCN5, putative, expressed"	Medtr8g074500.1	GCN5-related N-acetyltransferase; Bromodomain 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.205736.1.S1_at	A	A1MS	POPTR_0005s23930	POPTR_0005s23930 (11)	scaffold_5:22628488-22628826(+) (11)	NA	O22768	Transcription factor UNE12	AT4G02590.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g58330.1	"BHLH transcription factor, putative, expressed"	Medtr1g083450.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.205737.1.S1_at	A	A1TS	POPTR_0005s23990	POPTR_0005s23990 (11)	scaffold_5:22660711-22662546(-) (11)	NA	Q8W104	F-box/LRR-repeat protein 17	AT3G54650.1	RNI-like superfamily protein 	LOC_Os03g43390.1	"F-box/LRR domain containing protein, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.205738.1.S1_at	A	A1TS	POPTR_0005s24000	POPTR_0005s24000 (11)	scaffold_5:22676994-22679530(+) (11)	NA	Q941F1	"Phospholipase A1-Igamma1, chloroplastic"	AT1G06800.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g32380.1	"phospholipase, putative, expressed"	Medtr4g104700.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.205739.1.S1_at	A	A1TS	POPTR_0005s24010	POPTR_0005s24010 (11)	scaffold_5:22682972-22683547(+) (11)	NA	Q9FMU5	U3 small nucleolar RNA-associated protein 18 homolog	AT5G14050.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g41190.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g009910.1	Inorganic pyrophosphatase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205741.1.S1_at	A	A1TS	POPTR_0005s24080	POPTR_0005s24080 (11)	scaffold_5:22725512-22726631(-) (11)	NA	Q8GUM3	Amino acid permease 5	AT1G08230.2	Transmembrane amino acid transporter family protein 	LOC_Os10g27980.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205742.1.S1_at	A	A1TS	POPTR_0005s24110	POPTR_0005s24110 (11)	scaffold_5:22751362-22751714(-) (11)	NA	O80339	Ethylene-responsive transcription factor 3	AT1G50640.1	ethylene responsive element binding factor 3 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr2g017810.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.205743.1.S1_at	A	A1TS	POPTR_0005s24150	POPTR_0005s24150 (11)	scaffold_5:22778667-22779828(+) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os03g40020.1	"PPR repeat containing protein, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205744.1.S1_at	A	A1MS	POPTR_0005s24160	POPTR_0005s24160 (11)	scaffold_5:22784559-22784903(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205744.1.S1_s_at	A	A1TS	POPTR_0005s24160	POPTR_0005s24160 (9)	scaffold_5:22784639-22785017(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205745.1.S1_at	A	A1TS	POPTR_0005s24170	POPTR_0005s24170 (11)	scaffold_5:22792148-22794103(-) (11)	NA	Q0JGZ6	Fructokinase-1	AT1G06730.1	pfkB-like carbohydrate kinase family protein 	LOC_Os03g06880.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205746.1.S1_at	A	A1TS	POPTR_0005s24250	POPTR_0005s24250 (11)	scaffold_5:22875602-22876128(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205747.1.S1_at	A	A1TS	POPTR_0005s24270	POPTR_0005s24270 (11)	scaffold_5:22880922-22881152(-) (11)	NA	Q0V7S6	F-box/kelch-repeat protein OR23	AT4G03030.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g21110.1	"OsFBK6 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g134000.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205748.1.S1_at	A	A1TS	POPTR_0005s24280	POPTR_0005s24280 (11)	scaffold_5:22885253-22885789(+) (11)	NA	Q38895	Transcriptional regulator SUPERMAN	AT2G42410.1	zinc finger protein 11 	LOC_Os07g01180.1	"ZOS7-01 - C2H2 zinc finger protein, expressed"	Medtr2g091860.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.205749.1.S1_at	A	A1TS	POPTR_0005s24320	POPTR_0005s24320 (11)	scaffold_5:22912618-22913657(+) (11)	NA	Q9SLB7	LOB domain-containing protein 16	AT2G42430.1	lateral organ boundaries-domain 16 	LOC_Os08g44940.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205750.1.S1_at	A	A1TS	POPTR_0005s24340	POPTR_0005s24340 (11)	scaffold_5:22926301-22926575(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205751.1.S1_at	A	A1TS	POPTR_0005s24370	POPTR_0005s24370 (11)	scaffold_5:22941080-22941593(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205752.1.S1_at	A	A1TS	POPTR_0005s24380	POPTR_0005s24380 (11)	scaffold_5:22942510-22943358(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g088350.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205753.1.S1_at	A	A1TS	POPTR_0005s24400	POPTR_0005s24400 (9)	scaffold_5:22958046-22959536(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT2G39510.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os03g05530.1	"nodulin, putative, expressed"	Medtr1g068120.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.205754.1.S1_at	A	A1TS	POPTR_0005s24430	POPTR_0005s24430 (11)	scaffold_5:22976955-22978059(+) (11)	NA	Q6AZT7	Nephrocystin-3	AT2G31240.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g57470.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr8g125600.1	"kinesin light chain-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205755.1.S1_at	A	A1TS	POPTR_0005s24440	POPTR_0005s24440 (11)	scaffold_5:22983312-22983977(+) (11)	NA	P24397	Hyoscyamine 6-dioxygenase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os07g07410.2	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.205756.1.S1_at	A	A1TS	POPTR_0005s24500	POPTR_0005s24500 (11)	scaffold_5:23049232-23049530(+) (11)	NA	Q494P0	Probable inorganic phosphate transporter 1-7	AT3G54700.1	phosphate transporter 1;7 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.205756.1.S1_x_at	A	A1TS	POPTR_0005s24500	POPTR_0005s24500 (11)	scaffold_5:23049232-23049530(+) (11)	NA	Q494P0	Probable inorganic phosphate transporter 1-7	AT3G54700.1	phosphate transporter 1;7 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.205757.1.S1_at	A	A1TS	POPTR_0005s24510	POPTR_0005s24510 (11)	scaffold_5:23050120-23050607(+) (11)	NA	Q96303	Inorganic phosphate transporter 1-4	AT2G38940.1	phosphate transporter 1;4 	LOC_Os03g04360.1	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205758.1.S1_at	A	A1TS	POPTR_0005s24570	POPTR_0005s24570 (11)	scaffold_5:23081921-23082310(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g125210.1	Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.205759.1.S1_at	A	A1TS	POPTR_0005s24580	POPTR_0005s24580 (11)	scaffold_5:23084702-23085318(+) (11)	NA	Q9XHP0	11S globulin seed storage protein 2	AT5G44120.3	RmlC-like cupins superfamily protein 	LOC_Os02g16820.1	"glutelin, putative, expressed"	Medtr1g086770.1	11-S plant seed storage protein 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.205760.1.S1_at	A	A1TS	POPTR_0005s24590	POPTR_0005s24590 (11)	scaffold_5:23085814-23087650(-) (11)	NA	O35094	Mitochondrial import inner membrane translocase subunit TIM44	AT2G36070.1	translocase inner membrane subunit 44-2 	LOC_Os07g22700.2	"tim44-like domain containing protein, expressed"	Medtr2g097620.1	"Mitochondrial import inner membrane translocase, subunit Tim44 "	GO:0006886|intracellular protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0005744|mitochondrial inner membrane presequence translocase complex
PtpAffx.205761.1.S1_at	A	A1TS	POPTR_0005s24620	POPTR_0005s24620 (11)	scaffold_5:23097034-23097875(-) (11)	NA	Q94C59	Patellin-4	AT1G30690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os06g45990.2	"patellin-5, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205762.1.S1_at	A	A1TS	POPTR_0005s24680	POPTR_0005s24680 (11)	scaffold_5:23138309-23140602(+) (11)	NA	Q4FE47	Putative E3 ubiquitin-protein ligase XBAT35	AT3G23280.2	XB3 ortholog 5 in Arabidopsis thaliana 	LOC_Os07g26490.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g090650.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205763.1.S1_at	A	A1TS	POPTR_0005s24700	POPTR_0005s24700 (11)	scaffold_5:23156696-23157438(+) (11)	NA	Q8GWV5	U-box domain-containing protein 3	AT3G54790.1	ARM repeat superfamily protein 	LOC_Os08g01900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.205764.1.S1_at	A	A1TS	POPTR_0005s24720	POPTR_0005s24720 (11)	scaffold_5:23167062-23167494(-) (11)	NA	NA	NA	AT2G17990.1	BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to 6129 proteins in 783 species: Archae - 220; Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI BLink). 	LOC_Os06g50146.1	"calcium-dependent protein kinase CPK1 adapter protein 2, putative, expressed"	Medtr8g090110.1	"Calcium-dependent protein kinase CPK1 adapter protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205765.1.S1_at	A	A1TS	POPTR_0005s24750	POPTR_0005s24750 (11)	scaffold_5:23199921-23203318(-) (11)	NA	Q84TE6	NAC domain-containing protein 21/22	AT4G28530.1	NAC domain containing protein 74 	LOC_Os04g43560.1	"no apical meristem protein, putative, expressed"	Medtr2g076740.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.205766.1.S1_at	A	A1TS	POPTR_0005s24770	POPTR_0005s24770 (11)	scaffold_5:23216993-23219974(-) (11)	NA	NA	NA	AT2G20495.1	CONTAINS InterPro DOMAIN/s: Serine-threonine protein kinase 19 (InterPro:IPR018865); Has 155 Blast hits to 154 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 5; Plants - 34; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os07g27460.2	"serine/threonine-protein kinase 19, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205767.1.S1_at	A	A1TS	POPTR_0005s24820	POPTR_0005s24820 (11)	scaffold_5:23249385-23250233(-) (11)	NA	Q9UR24	DNA repair protein rhp26	AT2G18760.1	chromatin remodeling 8 	LOC_Os01g01312.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.205768.1.S1_at	A	A1TS	POPTR_0005s24850	POPTR_0005s24850 (11)	scaffold_5:23275353-23275851(+) (11)	NA	Q9M384	Protein SCARECROW	AT3G54220.1	GRAS family transcription factor 	LOC_Os11g03110.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g081070.1	Flagellar basal body rod protein; GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205769.1.S1_at	A	A1TS	POPTR_0005s24880	POPTR_0005s24880 (11)	scaffold_5:23304078-23306394(+) (11)	NA	Q06190	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha	AT5G44090.1	Calcium-binding EF-hand family protein 	LOC_Os10g33680.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed"	Medtr1g093540.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205771.1.S1_at	A	A1TS	POPTR_0005s24910	POPTR_0005s24910 (10)	scaffold_5:23324104-23325665(+) (10)	NA	NA	NA	AT4G28556.1	PAK-box/P21-Rho-binding family protein 	LOC_Os07g26480.2	"P21-Rho-binding domain containing protein, putative, expressed"	Medtr2g093180.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205772.1.S1_at	A	A1TS	POPTR_0005s24920	POPTR_0005s24920 (11)	scaffold_5:23327097-23327544(-) (11)	NA	Q5PP26	Piriformospora indica-insensitive protein 2	AT4G28560.1	ROP-interactive CRIB motif-containing protein 7 	LOC_Os06g42220.1	"TOO MANY MOUTHS precursor, putative, expressed"	Medtr2g126610.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.205773.1.S1_at	A	A1TS	POPTR_0005s24940	POPTR_0005s24940 (10)	scaffold_5:23342100-23342425(+) (11)	NA	Q10976	Putative fatty-acid--CoA ligase fadD26	NA	NA	LOC_Os05g50300.1	"AMP-binding enzyme, putative, expressed"	Medtr2g118030.1	"Serine/threonine dehydratase, pyridoxal-phosphate-binding site; AMP-dependent synthetase and ligase; Catalase; FAD dependent oxidoreductase; Acyl carrier protein-like; Trimeric LpxA-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.205774.1.S1_at	A	A1TS	POPTR_0005s24970	POPTR_0005s24970 (11)	scaffold_5:23367686-23368199(+) (11)	NA	Q9CAG5	U-box domain-containing protein 7	AT4G36550.1	ARM repeat superfamily protein 	LOC_Os02g47670.2	"bg55, putative, expressed"	Medtr5g020450.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.205775.1.S1_at	A	A1TS	POPTR_0005s24980	POPTR_0005s24980 (9)	scaffold_5:23370126-23370768(+) (10)	NA	Q940Z1	Pentatricopeptide repeat-containing protein At1g19525	AT1G19520.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os02g39820.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g112280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205776.1.S1_s_at	A	A1TS	POPTR_0005s24990	POPTR_0005s24990 (11)	scaffold_5:23372449-23373589(-) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT1G47271.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.1	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205777.1.S1_at	A	A1TS	POPTR_0005s25001	POPTR_0005s25001 (11)	scaffold_5:23375736-23376301(+) (11)	NA	NA	NA	AT1G75260.1	"oxidoreductases, acting on NADH or NADPH "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205778.1.S1_at	A	A1TS	POPTR_0005s25040	POPTR_0005s25040 (11)	scaffold_5:23400310-23400611(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205779.1.S1_at	A	A1TS	POPTR_0005s25140	POPTR_0005s25140 (11)	scaffold_5:23473821-23474306(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205780.1.S1_at	A	A1TS	POPTR_0005s25150	POPTR_0005s25150 (11)	scaffold_5:23481705-23482330(-) (11)	NA	NA	NA	AT1G19630.1	"cytochrome P450, family 722, subfamily A, polypeptide 1 "	LOC_Os05g01120.1	"cytochrome P450, putative, expressed"	Medtr8g092860.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205782.1.S1_at	A	A1TS	POPTR_0005s25170	POPTR_0005s25170 (11)	scaffold_5:23486772-23488124(-) (11)	NA	Q9SBK6	Jasmonate O-methyltransferase	AT1G19640.1	jasmonic acid carboxyl methyltransferase 	LOC_Os01g50610.1	"SAM dependent carboxyl methyltransferase, putative, expressed"	Medtr4g015360.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.205783.1.S1_at	A	A1TS	POPTR_0005s25180	POPTR_0005s25180 (11)	scaffold_5:23503717-23504459(+) (11)	NA	Q93YN9	Inositol-pentakisphosphate 2-kinase	AT1G22100.1	Inositol-pentakisphosphate 2-kinase family protein 	LOC_Os04g56580.1	"inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed"	NA	NA	NA	GO:0035299|inositol pentakisphosphate 2-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205784.1.S1_s_at	A	A1TS	POPTR_0005s25190	POPTR_0005s25190 (11)	scaffold_5:23506729-23506928(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205785.1.S1_at	A	A1TS	POPTR_0005s25250	POPTR_0005s25250 (11)	scaffold_5:23561860-23562193(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G27620.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g28474.1	"transferase family protein, putative, expressed"	Medtr3g094520.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.205786.1.S1_at	A	A1TS	POPTR_0005s25280	POPTR_0005s25280 (11)	scaffold_5:23589899-23590798(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205787.1.S1_at	A	A1TS	POPTR_0005s25310	POPTR_0005s25310 (11)	scaffold_5:23614785-23615130(+) (11)	NA	NA	NA	AT1G75400.1	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205789.1.S1_at	A	A1MS	POPTR_0005s25330	POPTR_0005s25330 (9)	scaffold_5:23624388-23624908(-) (9)	NA	Q96512	Peroxidase 9	AT1G44970.1	Peroxidase superfamily protein 	LOC_Os01g15810.1	"peroxidase precursor, putative, expressed"	Medtr1g028830.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.205790.1.S1_at	A	A1MS	POPTR_0005s25340	POPTR_0005s25340 (11)	scaffold_5:23626990-23627586(-) (11)	NA	NA	NA	AT5G57960.1	"GTP-binding protein, HflX "	LOC_Os11g38020.1	"GTPase of unknown function domain containing protein, putative, expressed"	AC235668_12.1	Small GTP-binding protein domain AC235668.1 41853-35303 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205791.1.S1_at	A	A1TS	POPTR_0005s25350	POPTR_0005s25350 (11)	scaffold_5:23631395-23632040(+) (11)	NA	Q1PFD1	BEL1-like homeodomain protein 11	AT1G75430.1	BEL1-like homeodomain 11 	LOC_Os12g43950.4	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.205794.1.S1_at	A	A1MS	POPTR_0005s25380	POPTR_0005s25380 (11)	scaffold_5:23642138-23642533(-) (11)	NA	Q67YU0	Cytokinin dehydrogenase 5	AT1G75450.1	cytokinin oxidase 5 	LOC_Os01g56810.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr4g118430.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
PtpAffx.205795.1.S1_at	A	A1TS	POPTR_0005s25380	POPTR_0005s25380 (11)	scaffold_5:23643625-23645532(-) (11)	NA	Q67YU0	Cytokinin dehydrogenase 5	AT1G75450.1	cytokinin oxidase 5 	LOC_Os01g56810.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr4g118430.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
PtpAffx.205796.1.S1_at	A	A1TS	POPTR_0005s25390	POPTR_0005s25390 (11)	scaffold_5:23660543-23661756(-) (11)	NA	P82859	Agglutinin	AT1G19715.2	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.3	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205797.1.S1_at	A	A1TS	POPTR_0005s25400	POPTR_0005s25400 (10)	scaffold_5:23671023-23671559(-) (11)	NA	P82859	Agglutinin	AT1G19715.2	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.3	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205798.1.S1_at	A	A1TS	POPTR_0005s25400	POPTR_0005s25400 (11)	scaffold_5:23671887-23672364(-) (11)	NA	P82859	Agglutinin	AT1G19715.2	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.3	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205799.1.S1_at	A	A1TS	POPTR_0005s25410	POPTR_0005s25410 (11)	scaffold_5:23686692-23686890(+) (11)	NA	Q10RB4	Beta-galactosidase 5	AT4G36360.1	beta-galactosidase 3 	LOC_Os03g06940.1	"beta-galactosidase, putative, expressed"	Medtr5g021090.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.2058.1.S1_at	A	A1TS	POPTR_0001s19260	POPTR_0001s19260 (11)	scaffold_1:16836383-16837182(+) (11)	NA	Q9SSC9	Histidine-containing phosphotransfer protein 6	AT1G80100.1	histidine phosphotransfer protein 6 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g126560.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.205802.1.S1_at	A	A1TS	POPTR_0005s25470	POPTR_0005s25470 (10)	scaffold_5:23715045-23715416(+) (10)	NA	Q9LQZ2	Dehydration-responsive element-binding protein 2D	AT1G75490.1	Integrase-type DNA-binding superfamily protein 	LOC_Os08g45110.1	"AP2 domain containing protein, expressed"	Medtr1g028580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.205804.1.S1_at	A	A1TS	POPTR_0005s25490	POPTR_0005s25490 (11)	scaffold_5:23730087-23730652(+) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os03g51050.1	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.205805.1.S1_at	A	A1TS	POPTR_0005s25550	POPTR_0005s25550 (11)	scaffold_5:23776090-23777844(-) (11)	NA	Q8AVM5	V-type proton ATPase 116 kDa subunit a isoform 1	AT2G21410.1	vacuolar proton ATPase A2 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.205806.1.S1_at	A	A1TS	POPTR_0005s25560	POPTR_0005s25560 (11)	scaffold_5:23795372-23796137(-) (11)	NA	NA	NA	AT1G75520.1	SHI-related sequence 5 	LOC_Os06g49830.1	"SHI, putative, expressed"	Medtr1g028540.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205806.1.S1_x_at	A	A1TS	POPTR_0005s25560	POPTR_0005s25560 (11)	scaffold_5:23795372-23796173(-) (11)	NA	NA	NA	AT1G75520.1	SHI-related sequence 5 	LOC_Os06g49830.1	"SHI, putative, expressed"	Medtr1g028540.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205808.1.S1_at	A	A1TS	POPTR_0005s25570	POPTR_0005s25570 (11)	scaffold_5:23814894-23818882(+) (11)	NA	Q99L90	Microspherule protein 1	AT3G54350.3	Forkhead-associated (FHA) domain-containing protein  	LOC_Os03g58640.1	"FHA domain containing protein, putative, expressed"	Medtr3g154090.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205809.1.S1_at	A	A1TS	POPTR_0005s25580	POPTR_0005s25580 (11)	scaffold_5:23822349-23822869(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT5G66330.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g43250.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g021240.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.205810.1.S1_at	A	A1TS	POPTR_0005s25630	POPTR_0005s25630 (10)	scaffold_5:23855411-23855956(-) (10)	NA	NA	NA	AT5G42480.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g03000.2	"division protein, putative, expressed"	Medtr1g028480.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205811.1.S1_at	A	A1TS	POPTR_0005s25640	POPTR_0005s25640 (11)	scaffold_5:23865773-23866312(+) (11)	NA	C0LGS2	Probable LRR receptor-like serine/threonine-protein kinase At4g36180	AT1G75640.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g48760.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g154000.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.205812.1.S1_at	A	A1TS	POPTR_0005s25670	POPTR_0005s25670 (10)	scaffold_5:23882777-23883000(-) (11)	NA	Q6Z690	Lysine-specific histone demethylase 1 homolog 1	AT4G16310.1	LSD1-like 3 	LOC_Os10g38850.1	"amine oxidase, putative, expressed"	Medtr1g028330.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.205813.1.S1_at	A	A1TS	POPTR_0005s25800	POPTR_0005s25800 (11)	scaffold_5:23976467-23976834(-) (11)	NA	P93024	Auxin response factor 5	AT1G19850.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os04g56850.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.205813.1.S1_x_at	A	A1TS	POPTR_0005s25800	POPTR_0005s25800 (11)	scaffold_5:23976467-23976917(-) (11)	NA	P93024	Auxin response factor 5	AT1G19850.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os04g56850.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.205814.1.S1_at	A	A1TA	POPTR_0005s25800	POPTR_0005s25800 (11)	scaffold_5:23977738-23977839(+) (11)	NA	P93024	Auxin response factor 5	AT1G19850.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os04g56850.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.205814.1.S1_s_at	A	A1TA	POPTR_0005s25800	POPTR_0005s25800 (11)	scaffold_5:23977841-23978059(+) (11)	NA	P93024	Auxin response factor 5	AT1G19850.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os04g56850.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.205815.1.S1_at	A	A1TS	POPTR_0005s25810	POPTR_0005s25810 (11)	scaffold_5:23991109-23991392(+) (11)	NA	NA	NA	AT1G75670.2	DNA-directed RNA polymerases 	LOC_Os06g07190.2	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr7g092380.1	"RNA polymerase Rpb7, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.205816.1.S1_s_at	A	A4TS	POPTR_0002s22390	POPTR_0002s22390 (11)//POPTR_0009s10260 (11)//POPTR_0019s06035 (11)//POPTR_0698s00010 (11)	scaffold_19:6497700-6497870(+) (11)//scaffold_2:19101323-19101493(-) (11)//scaffold_698:2776-2946(+) (11)//scaffold_9:8855497-8855667(-) (11)	NA	NA	NA	AT5G53390.1	O-acyltransferase (WSD1-like) family protein 	NA	NA	Medtr1g009270.2	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205817.1.S1_at	A	A1TS	POPTR_0005s25830	POPTR_0005s25830 (11)	scaffold_5:24035167-24035350(+) (11)	NA	Q0WSY2	Filament-like plant protein 4	AT1G19835.2	Plant protein of unknown function (DUF869) 	LOC_Os03g14250.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr5g021760.1	"Protein of unknown function DUF869, plant "	GO:0016032|viral reproduction	NA	NA
PtpAffx.205818.1.S1_s_at	A	A1TS	POPTR_0005s25870	POPTR_0005s25870 (11)	scaffold_5:24083828-24084838(+) (11)	NA	Q9FQ03	5'-3' exoribonuclease 3	AT1G75660.1	5'-3' exoribonuclease 3 	LOC_Os01g65220.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr4g079110.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.205820.1.S1_at	A	A1TS	POPTR_0005s25920	POPTR_0005s25920 (10)	scaffold_5:24118557-24120176(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205821.1.S1_at	A	A1TS	POPTR_0005s25930	POPTR_0005s25930 (9)	scaffold_5:24121056-24121409(-) (9)	NA	Q61502	Transcription factor E2F5	AT1G47870.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os04g02140.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g156310.1	Transcription factor E2F/dimerisation partner (TDP) 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
PtpAffx.205821.1.S1_x_at	A	A1TS	POPTR_0005s25930	POPTR_0005s25930 (10)	scaffold_5:24121056-24121422(-) (10)	NA	Q61502	Transcription factor E2F5	AT1G47870.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os04g02140.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g156310.1	Transcription factor E2F/dimerisation partner (TDP) 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
PtpAffx.205822.1.S1_at	A	A1TS	POPTR_0005s25940	POPTR_0005s25940 (11)	scaffold_5:24123852-24125540(-) (11)	NA	Q54UB1	tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6	AT2G45730.1	eukaryotic initiation factor 3 gamma subunit family protein 	LOC_Os04g02150.2	"tRNA methyltransferase, putative, expressed"	Medtr1g030970.1	"Eukaryotic initiation factor 3, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.205823.1.S1_at	A	A1TS	POPTR_0005s25960	POPTR_0005s25960 (11)	scaffold_5:24141376-24141577(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g031060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205824.1.S1_at	A	A1TS	POPTR_0005s25970	POPTR_0005s25970 (11)	scaffold_5:24142518-24142832(-) (11)	NA	NA	NA	AT1G75720.2	Plant protein of unknown function (DUF827) 	LOC_Os04g02650.1	expressed protein	Medtr3g156320.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205825.1.S1_at	A	A1TS	POPTR_0005s26000	POPTR_0005s26000 (10)	scaffold_5:24156400-24157254(-) (11)	NA	NA	NA	AT1G75730.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages. 	NA	NA	Medtr3g156340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205826.1.S1_at	A	A1TS	POPTR_0005s26020	POPTR_0005s26020 (11)	scaffold_5:24167551-24167597(-) (11)	NA	P46689	Gibberellin-regulated protein 1	AT2G18420.1	Gibberellin-regulated family protein 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr3g156410.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205826.1.S1_s_at	A	A1TS	POPTR_0005s26020	POPTR_0005s26020 (11)	scaffold_5:24167030-24167545(-) (11)	NA	P46689	Gibberellin-regulated protein 1	AT2G18420.1	Gibberellin-regulated family protein 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr3g156410.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205827.1.S1_x_at	A	A1TS	POPTR_0005s26060	POPTR_0005s26060 (11)	scaffold_5:24195518-24196107(-) (11)	NA	NA	NA	AT5G41220.1	glutathione S-transferase THETA 3 	LOC_Os06g42890.1	"DNA binding protein, putative"	Medtr4g114770.1	"Homeodomain-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205829.1.S1_at	A	A1TS	POPTR_0005s26100	POPTR_0005s26100 (11)	scaffold_5:24208173-24209137(+) (11)	NA	NA	NA	AT1G19980.1	cytomatrix protein-related 	LOC_Os04g02680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205830.1.S1_at	A	A1TS	POPTR_0005s26120	POPTR_0005s26120 (11)	scaffold_5:24214970-24215277(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205831.1.S1_s_at	A	A1TS	POPTR_0005s26130	POPTR_0005s26130 (11)	scaffold_5:24220659-24221039(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g031210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205832.1.S1_at	A	A1TS	POPTR_0005s26160	POPTR_0005s26160 (10)	scaffold_5:24241051-24241593(-) (10)	NA	Q8GUG9	U-box domain-containing protein 11	AT3G06880.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g30010.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g112060.1	U box; Armadillo-like helical; 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.205833.1.S1_at	A	A1TS	POPTR_0005s26190	POPTR_0005s26190 (11)	scaffold_5:24282435-24283576(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205834.1.S1_at	A	A1TS	POPTR_0005s26210	POPTR_0005s26210 (11)	scaffold_5:24287666-24288096(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205835.1.S1_at	A	A1MS	POPTR_0005s26240	POPTR_0005s26240 (11)	scaffold_5:24309772-24309844(+) (11)	NA	P83332	Thaumatin-like protein 1	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205839.1.S1_at	A	A1TS	POPTR_0005s26350	POPTR_0005s26350 (11)	scaffold_5:24413004-24413273(-) (11)	NA	Q2HJG5	Vacuolar protein sorting-associated protein 35	AT1G75850.1	VPS35 homolog B 	LOC_Os03g58700.1	"vacuolar protein sorting-associated protein 35, putative, expressed"	Medtr1g031540.1	Vacuolar protein sorting-associated protein 35 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205840.1.S1_at	A	A1TS	POPTR_0005s26410	POPTR_0005s26410 (11)	scaffold_5:24445963-24446631(+) (11)	NA	NA	NA	AT4G35070.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os04g32980.1	"protein binding protein, putative, expressed"	Medtr3g163480.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205841.1.S1_at	A	A1TS	POPTR_0005s26470	POPTR_0005s26470 (11)	scaffold_5:24470128-24474707(-) (11)	NA	O65351	Subtilisin-like protease	AT1G20160.2	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30458.1	"subtilisin-like protease, putative, expressed"	Medtr3g156980.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205843.1.S1_at	A	A1TS	POPTR_0005s26510	POPTR_0005s26510 (11)	scaffold_5:24504799-24505432(+) (11)	NA	Q7XWU3	Probable cinnamyl alcohol dehydrogenase 6	AT2G21890.1	cinnamyl alcohol dehydrogenase homolog 3 	LOC_Os04g15920.1	"dehydrogenase, putative, expressed"	Medtr1g031870.1	"Alcohol dehydrogenase, zinc-containing; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205844.1.S1_at	A	A1TS	POPTR_0005s26520	POPTR_0005s26520 (11)	scaffold_5:24511127-24511694(+) (11)	NA	Q6DYE5	UPF0496 protein At1g20180	AT1G20180.1	Protein of unknown function (DUF677) 	LOC_Os03g05440.1	"DUF677 domain containing protein, putative, expressed"	Medtr1g031880.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205846.1.S1_at	A	A1MS	POPTR_0005s26560	POPTR_0005s26560 (11)	scaffold_5:24521016-24521698(-) (11)	NA	Q06364	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G75990.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os08g43640.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.205847.1.S1_at	A	A1TS	POPTR_0005s26620	POPTR_0005s26620 (11)	scaffold_5:24557354-24558217(-) (11)	NA	Q8GT75	NEP1-interacting protein 1	AT4G35840.1	RING/U-box superfamily protein 	LOC_Os10g39770.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr5g022920.1	"Zinc finger, RING-type "	NA	NA	GO:0019867|outer membrane
PtpAffx.205848.1.S1_at	A	A1TS	POPTR_0005s26660	POPTR_0005s26660 (11)	scaffold_5:24580607-24582216(-) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT1G20270.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr3g157260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.205849.1.S1_at	A	A1TS	POPTR_0005s26690	POPTR_0005s26690 (11)	scaffold_5:24599953-24600454(+) (11)	NA	Q9SGS5	Uncharacterized protein At1g76070	AT1G76070.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os09g37080.1	expressed protein	Medtr3g157310.1	"Uncharacterized protein At1g76070, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205850.1.S1_at	A	A1TS	POPTR_0005s26760	POPTR_0005s26760 (11)	scaffold_5:24636032-24636146(-) (11)	NA	P50134	Ornithine decarboxylase	AT3G14390.1	Pyridoxal-dependent decarboxylase family protein 	LOC_Os09g37120.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr3g157420.1	Orn/DAP/Arg decarboxylase 2 	NA	GO:0003824|catalytic activity	NA
PtpAffx.205850.1.S1_s_at	A	A1TS	POPTR_0005s26760	POPTR_0005s26760 (11)	scaffold_5:24636164-24636618(-) (11)	NA	P50134	Ornithine decarboxylase	AT3G14390.1	Pyridoxal-dependent decarboxylase family protein 	LOC_Os09g37120.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr3g157420.1	Orn/DAP/Arg decarboxylase 2 	NA	GO:0003824|catalytic activity	NA
PtpAffx.205852.1.S1_at	A	A1TS	POPTR_0005s26790	POPTR_0005s26790 (11)	scaffold_5:24667467-24667538(+) (11)	NA	Q9SYM1	Uncharacterized mscS family protein At1g78610	AT1G53470.1	mechanosensitive channel of small conductance-like 4 	LOC_Os02g44770.1	"uncharacterized mscS family protein, putative, expressed"	Medtr1g143150.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.205852.1.S1_s_at	A	A1TS	POPTR_0005s26790	POPTR_0005s26790 (11)	scaffold_5:24667524-24668040(+) (11)	NA	Q9SYM1	Uncharacterized mscS family protein At1g78610	AT1G53470.1	mechanosensitive channel of small conductance-like 4 	LOC_Os02g44770.1	"uncharacterized mscS family protein, putative, expressed"	Medtr1g143150.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.205853.1.S1_at	A	A1TS	POPTR_0005s26790	POPTR_0005s26790 (11)	scaffold_5:24669706-24669940(+) (11)	NA	Q9SYM1	Uncharacterized mscS family protein At1g78610	AT1G53470.1	mechanosensitive channel of small conductance-like 4 	LOC_Os02g44770.1	"uncharacterized mscS family protein, putative, expressed"	Medtr1g143150.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.205854.1.S1_at	A	A1TS	POPTR_0005s26800	POPTR_0005s26800 (11)	scaffold_5:24672241-24673450(-) (11)	NA	Q9SGS2	High mobility group B protein 9	AT1G76110.1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain 	LOC_Os09g37250.1	"high mobility group, putative"	Medtr1g146490.1	HMG1/2 (high mobility group) box; AT-rich interaction region 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.205855.1.S1_at	A	A1TS	POPTR_0005s26850	POPTR_0005s26850 (10)	scaffold_5:24713034-24713426(-) (11)	NA	P0C8R0	Putative pentatricopeptide repeat-containing protein At5g43820	AT5G43820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g20160.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g121400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205856.1.S1_at	A	A1TS	POPTR_0005s26880	POPTR_0005s26880 (11)	scaffold_5:24729126-24730482(-) (11)	NA	Q3MIT2	Putative tRNA pseudouridine synthase Pus10	AT1G20410.1	Pseudouridine synthase family protein 	LOC_Os04g47380.1	"coiled-coil domain-containing protein 139, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205857.1.S1_at	A	A1TS	POPTR_0005s26920	POPTR_0005s26920 (11)	scaffold_5:24768908-24769560(-) (11)	NA	Q304B9	Neutral ceramidase	AT2G38010.2	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr3g111420.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205858.1.S1_s_at	A	A1MS	POPTR_0005s26940	POPTR_0005s26940 (10)	scaffold_1035:7550-8122(+) (10)//scaffold_5:24781034-24781627(-) (11)	POPTR_1035s00200 (8)	Q8VXV7	Lysine-specific histone demethylase 1 homolog 1	AT1G62830.1	LSD1-like 1 	LOC_Os02g51880.1	"amine oxidase, putative, expressed"	Medtr3g076130.1	Amine oxidase; SWIRM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205859.1.S1_at	A	A1TS	POPTR_0005s27000	POPTR_0005s27000 (11)	scaffold_5:24804664-24805229(-) (11)	NA	NA	NA	AT1G76210.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43960.1	"carrier, putative, expressed"	Medtr8g088740.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205860.1.S1_at	A	A1TS	POPTR_0005s27030	POPTR_0005s27030 (9)	scaffold_5:24850424-24851608(+) (10)	NA	Q8LBB7	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5	AT4G35190.1	Putative lysine decarboxylase family protein 	LOC_Os02g41770.1	"uncharacterized protein PA4923, putative"	Medtr7g121720.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205861.1.S1_at	A	A2TS	POPTR_0973s00200	POPTR_0973s00200 (11)//POPTR_0005s27040 (10)	scaffold_5:24857430-24857936(-) (10)//scaffold_973:3109-3615(+) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43980.1	"carrier, putative"	Medtr3g162490.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205862.1.S1_at	A	A1TS	POPTR_0005s27050	POPTR_0005s27050 (11)	scaffold_5:24861656-24862238(-) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43970.1	"carrier, putative"	Medtr4g096140.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205864.1.S1_at	A	A1TS	POPTR_0005s27070	POPTR_0005s27070 (11)	scaffold_5:24868962-24869661(-) (11)	POPTR_0002s01310 (6)	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT4G35230.1	BR-signaling kinase 1 	LOC_Os03g04050.1	"protein kinase family protein, putative, expressed"	Medtr5g106610.1	Protein kinase; Tetratricopeptide-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205864.1.S1_s_at	A	A1TS	POPTR_0005s27070	POPTR_0005s27070 (11)	scaffold_5:24869018-24870392(-) (11)	NA	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT4G35230.1	BR-signaling kinase 1 	LOC_Os03g04050.1	"protein kinase family protein, putative, expressed"	Medtr5g106610.1	Protein kinase; Tetratricopeptide-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205865.1.S1_at	A	A1TS	POPTR_0005s27080	POPTR_0005s27080 (11)	scaffold_5:24881419-24881967(-) (11)	NA	NA	NA	AT2G17110.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37520.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205866.1.S1_at	A	A1TS	POPTR_0005s27090	POPTR_0005s27090 (11)	scaffold_5:24890040-24890399(-) (11)	NA	NA	NA	AT1G76240.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os06g50980.1	conserved hypothetical protein	Medtr5g023250.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205867.1.S1_x_at	A	A1TS	POPTR_0005s27130	POPTR_0005s27130 (11)	scaffold_5:24918979-24919600(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G76270.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr5g106640.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205868.1.S1_at	A	A1TS	POPTR_0005s27160	POPTR_0005s27160 (11)	scaffold_5:24946396-24947318(+) (11)	NA	Q8L844	"Pentatricopeptide repeat-containing protein At5g42310, mitochondrial"	AT5G42310.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g36390.1	"PPR repeat containing protein, expressed"	Medtr4g155160.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205870.1.S1_at	A	A1TS	POPTR_0005s27180	POPTR_0005s27180 (11)	scaffold_5:24953602-24953921(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205871.1.S1_at	A	A1TS	POPTR_0005s27200	POPTR_0005s27200 (11)	scaffold_5:24958389-24959050(-) (11)	NA	Q9LMA1	Probable flavin-containing monooxygenase 1	AT1G19250.1	flavin-dependent monooxygenase 1 	LOC_Os04g14690.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr8g132980.1	"Amine oxidase; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205872.1.S1_at	A	A1TS	POPTR_0005s27210	POPTR_0005s27210 (11)	scaffold_5:24962569-24962722(-) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008840.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.205872.1.S1_x_at	A	A1TS	POPTR_0005s27210	POPTR_0005s27210 (11)	scaffold_5:24962569-24962870(-) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008840.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.205873.1.S1_at	A	A1TS	POPTR_0005s27310	POPTR_0005s27310 (11)	scaffold_5:25018431-25018953(+) (11)	NA	Q9LE38	Protein NLP4	AT1G20640.2	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205875.1.S1_at	A	A1TS	POPTR_0005s27330	POPTR_0005s27330 (11)	scaffold_5:25044848-25045480(-) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT1G76360.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205876.1.S1_at	A	A1TS	POPTR_0005s27350	POPTR_0005s27350 (11)	scaffold_5:25064388-25064626(+) (11)	NA	NA	NA	AT4G37420.1	Domain of unknown function (DUF23) 	LOC_Os06g51210.1	"zinc finger family protein, putative"	Medtr5g038040.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205877.1.S1_at	A	A1TS	POPTR_0005s27360	POPTR_0005s27360 (10)	scaffold_5:25067206-25067942(-) (10)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT1G20670.1	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr5g100440.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205879.1.S1_at	A	A1TS	POPTR_0005s27370	POPTR_0005s27370 (11)	scaffold_5:25077525-25077978(-) (11)	NA	Q5XET4	Pentatricopeptide repeat-containing protein At2g01860	AT2G01860.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g02590.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g045430.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205880.1.S1_at	A	A1TS	POPTR_0005s27400	POPTR_0005s27400 (11)	scaffold_5:25094239-25095466(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205881.1.S1_at	A	A1TS	POPTR_0005s27420	POPTR_0005s27420 (11)	scaffold_5:25099385-25100258(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205882.1.S1_s_at	A	A1MS	POPTR_0005s27450	POPTR_0005s27450 (9)	scaffold_5:25117904-25119500(+) (9)	NA	Q6NPG7	Uncharacterized protein At5g43822	AT5G43822.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g41730.1	expressed protein	Medtr4g033170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205884.1.S1_at	A	A1TS	POPTR_0005s27480	POPTR_0005s27480 (11)	scaffold_5:25126304-25126501(+) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os12g17900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.205885.1.S1_at	A	A1TS	POPTR_0005s27490	POPTR_0005s27490 (11)	scaffold_5:25127533-25128022(-) (11)	NA	Q9FII1	F-box/kelch-repeat protein At5g42360	AT5G42360.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os09g38300.1	"OsFBK20 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g160130.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205886.1.S1_at	A	A1TS	POPTR_0005s27490	POPTR_0005s27490 (10)	scaffold_5:25128710-25128982(-) (10)	POPTR_0002s00900 (7)	Q9FII1	F-box/kelch-repeat protein At5g42360	AT5G42360.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os09g38300.1	"OsFBK20 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g160130.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205886.1.S1_x_at	A	A2TS	POPTR_0005s27490	POPTR_0005s27490 (11)//POPTR_0002s00900 (9)	scaffold_2:421058-421367(+) (9)//scaffold_5:25128673-25128982(-) (11)	NA	Q9FII1	F-box/kelch-repeat protein At5g42360	AT5G42360.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os09g38300.1	"OsFBK20 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g160130.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205888.1.S1_at	A	A1TS	POPTR_0005s27570	POPTR_0005s27570 (11)	scaffold_5:25170347-25171544(+) (11)	NA	O49873	MLO protein homolog 1	AT1G61560.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr3g160040.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.205889.1.S1_at	A	A1TS	POPTR_0005s27580	POPTR_0005s27580 (11)	scaffold_5:25177400-25177870(+) (11)	NA	Q6DR03	Probable S-acyltransferase At2g33640	AT2G33640.1	DHHC-type zinc finger family protein 	LOC_Os04g49560.1	"zinc finger family protein, putative, expressed"	Medtr3g160020.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.205890.1.S1_s_at	A	A2TS	POPTR_0005s27600	POPTR_0005s27600 (11)//POPTR_0005s27590 (10)	scaffold_5:25182621-25190599(-) (11)//scaffold_5:25190524-25191027(-) (10)	NA	Q9M0Q9	Putative F-box protein At4g09190	AT4G09190.1	F-box and associated interaction domains-containing protein 	NA	NA	Medtr3g040820.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205892.1.S1_at	A	A1TS	POPTR_0005s27610	POPTR_0005s27610 (11)	scaffold_5:25194264-25194477(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205895.1.S1_at	A	A1TS	POPTR_0005s27670	POPTR_0005s27670 (11)	scaffold_5:25218405-25218848(+) (11)	POPTR_0002s00770 (6)	NA	NA	AT1G20830.1	multiple chloroplast division site 1 	LOC_Os04g49540.1	expressed protein	Medtr3g159930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205896.1.S1_at	A	A1TS	POPTR_0005s27690	POPTR_0005s27690 (11)	scaffold_5:25228100-25228564(-) (11)	NA	NA	NA	AT1G42550.1	plastid movement impaired1 	LOC_Os09g38090.1	expressed protein	Medtr4g155580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205897.1.S1_at	A	A1TS	POPTR_0005s27710	POPTR_0005s27710 (10)	scaffold_5:25238796-25239858(+) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os03g47130.1	"transposon protein, putative, unclassified"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205898.1.S1_at	A	A1TS	POPTR_0005s27720	POPTR_0005s27720 (11)	scaffold_5:25242589-25243606(-) (11)	NA	Q9S851	Protein CUP-SHAPED COTYLEDON 3	AT1G76420.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g40030.1	"CUP-SHAPED COTYLEDON3, putative, expressed"	Medtr3g159900.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.205899.1.S1_at	A	A1MS	POPTR_0005s27750	POPTR_0005s27750 (9)	scaffold_5:25269313-25269790(-) (9)	NA	NA	NA	AT1G20870.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr2g095360.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205900.1.S1_at	A	A1MS	POPTR_0005s27770	POPTR_0005s27770 (10)	scaffold_5:25276501-25277344(+) (10)	NA	Q9D665	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205901.1.S1_at	A	A1TS	POPTR_0005s27810	POPTR_0005s27810 (11)	scaffold_5:25292690-25293173(-) (11)	NA	Q9I8B3	RNA-binding protein 24-B	AT1G76460.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g48340.2	"RNA recognition motif containing protein, putative, expressed"	Medtr3g159840.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.205901.1.S1_s_at	A	A1TS	POPTR_0005s27810	POPTR_0005s27810 (11)	scaffold_5:25292664-25293459(-) (11)	NA	Q9I8B3	RNA-binding protein 24-B	AT1G76460.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g48340.2	"RNA recognition motif containing protein, putative, expressed"	Medtr3g159840.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.205902.1.S1_at	A	A1TS	POPTR_0005s27820	POPTR_0005s27820 (11)	scaffold_5:25298727-25299678(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205903.1.S1_at	A	A1TS	POPTR_0005s27850	POPTR_0005s27850 (11)	scaffold_5:25333770-25334092(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT1G76500.1	Predicted AT-hook DNA-binding family protein 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	CU179634_7.1	"AGF1 ; transcription facto, putative CU179634.6 27665-28510 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205904.1.S1_at	A	A1TS	POPTR_0005s27860	POPTR_0005s27860 (9)	scaffold_5:25338770-25341325(-) (11)	NA	NA	NA	AT1G76510.3	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr3g159760.1	AT-rich interaction region; Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205906.1.S1_at	A	A1TS	POPTR_0005s27950	POPTR_0005s27950 (11)	scaffold_5:25384704-25385993(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205907.1.S1_at	A	A1TS	POPTR_0005s27990	POPTR_0005s27990 (11)	scaffold_5:25395407-25396747(-) (11)	NA	NA	NA	AT1G20960.2	"U5 small nuclear ribonucleoprotein helicase, putative "	LOC_Os02g01740.1	"U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed"	Medtr2g076960.1	AAA ATPase; Sec63; ATP-requiring DNA helicase RecQ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205908.1.S1_at	A	A1TS	POPTR_0005s28010	POPTR_0005s28010 (11)	scaffold_5:25417822-25418692(+) (11)	NA	Q8RY95	Squamosa promoter-binding-like protein 14	AT1G20980.1	squamosa promoter binding protein-like 14 	LOC_Os08g40260.1	"OsSPL15 - SBP-box gene family member, expressed"	Medtr1g039740.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.205910.1.S1_at	A	A1TS	POPTR_0005s28050	POPTR_0005s28050 (11)	scaffold_5:25449992-25450402(+) (11)	NA	NA	NA	AT1G21010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76600.1); Has 206 Blast hits to 206 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g09970.1	expressed protein	CU179634_28.1	Protein of unknown function DUF547 CU179634.6 104418-109619 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205911.1.S1_at	A	A1TS	POPTR_0005s28060	POPTR_0005s28060 (11)	scaffold_5:25456459-25456828(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205912.1.S1_at	A	A1TS	POPTR_0005s28080	POPTR_0005s28080 (11)	scaffold_5:25469817-25470347(-) (11)	NA	Q9SGY7	Putative proline-rich receptor-like protein kinase PERK11	AT2G33580.1	Protein kinase superfamily protein 	LOC_Os02g09960.1	"LYK8, putative, expressed"	Medtr5g093120.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205913.1.S1_s_at	A	A2TS	POPTR_0002s00320	POPTR_0005s28130 (11)//POPTR_0002s00320 (11)	scaffold_2:75259-76164(+) (11)//scaffold_5:25489705-25490610(-) (11)	NA	Q08D57	Histone-lysine N-methyltransferase SETD1B	AT5G42400.1	SET domain protein 25 	LOC_Os12g41900.1	"SET domain containing protein, expressed"	Medtr4g089540.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205918.1.S1_s_at	A	A1TS	POPTR_0006s00300	POPTR_0006s00300 (11)	scaffold_6:76909-77466(-) (11)	NA	NA	NA	AT2G38970.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os09g12720.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g033390.1	"Zinc finger, RING-type; von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205919.1.S1_at	A	A1TS	POPTR_0006s00330	POPTR_0006s00330 (11)	scaffold_6:125795-126328(-) (11)	NA	Q9LIQ7	"Pentatricopeptide repeat-containing protein At3g24000, mitochondrial"	AT3G24000.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g30760.1	"pentatricopeptide, putative"	Medtr1g008670.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205920.1.S1_at	A	A1TS	POPTR_0006s00380	POPTR_0006s00380 (11)	scaffold_6:161755-163396(+) (11)	NA	NA	NA	AT5G64670.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os08g21840.1	"50S ribosomal protein L15, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205921.1.S1_at	A	A1TS	POPTR_0006s00390	POPTR_0006s00390 (11)	scaffold_6:178694-178774(+) (11)	NA	NA	NA	AT4G05030.1	Copper transport protein family 	LOC_Os04g39350.1	"heavy metal associated domain containing protein, expressed"	Medtr2g033170.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.205921.1.S1_x_at	A	A1TS	POPTR_0006s00390	POPTR_0006s00390 (11)	scaffold_6:178220-178774(+) (11)	NA	NA	NA	AT4G05030.1	Copper transport protein family 	LOC_Os04g39350.1	"heavy metal associated domain containing protein, expressed"	Medtr2g033170.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.205922.1.S1_at	A	A1TS	POPTR_0006s00400	POPTR_0006s00400 (10)	scaffold_6:181163-181540(+) (11)	NA	NA	NA	AT4G05030.1	Copper transport protein family 	LOC_Os02g37280.1	"heavy metal transport/detoxification protein, putative"	Medtr2g033170.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.205923.1.S1_at	A	A1TS	POPTR_0006s00410	POPTR_0006s00410 (11)	scaffold_6:183898-185183(+) (11)	NA	Q9FIK0	6-phosphofructokinase 2	AT5G47810.1	phosphofructokinase 2 	LOC_Os01g09570.1	"6-phosphofructokinase, putative, expressed"	AC233669_7.1	Phosphofructokinase AC233669.2 25649-23969 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205925.1.S1_at	A	A1TS	POPTR_0006s00440	POPTR_0006s00440 (11)	scaffold_6:211239-212043(-) (11)	NA	Q04672	Sucrose-binding protein	AT3G22640.1	cupin family protein 	LOC_Os03g46100.1	"cupin domain containing protein, expressed"	Medtr1g084050.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.205926.1.S1_at	A	A1TS	POPTR_0006s00450	POPTR_0006s00450 (11)	scaffold_6:216174-217351(-) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os06g40650.2	"copine-1, putative, expressed"	Medtr3g102530.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205927.1.S1_at	A	A1TS	POPTR_0006s00490	POPTR_0006s00490 (11)	scaffold_6:244051-244396(-) (11)	NA	Q5KS50	Coleoptile phototropism protein 1	AT5G47800.1	Phototropic-responsive NPH3 family protein 	LOC_Os09g09370.1	"BTBN18 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	AC233669_17.1	NPH3 AC233669.2 72476-75261 E EGN_Mt090430 200	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.205928.1.S1_at	A	A1TS	POPTR_0006s00510	POPTR_0006s00510 (11)	scaffold_6:258563-258919(-) (11)	NA	Q9ZVT9	C2 and GRAM domain-containing protein At1g03375	AT1G03370.1	C2 calcium/lipid-binding and GRAM domain containing protein 	LOC_Os06g19400.1	"GRAM and C2 domains containing protein, putative, expressed"	Medtr2g032960.1	C2; GRAM; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205928.1.S1_s_at	A	A2TS	POPTR_0006s00510	POPTR_0006s00510 (11)//POPTR_0016s00550 (11)	scaffold_16:187911-188657(-) (11)//scaffold_6:258325-259042(-) (11)	NA	Q9ZVT9	C2 and GRAM domain-containing protein At1g03375	AT1G03370.1	C2 calcium/lipid-binding and GRAM domain containing protein 	LOC_Os06g19400.1	"GRAM and C2 domains containing protein, putative, expressed"	Medtr2g032960.1	C2; GRAM; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205928.1.S1_x_at	A	A1TS	POPTR_0006s00510	POPTR_0006s00510 (11)	scaffold_6:258189-258960(-) (11)	NA	Q9ZVT9	C2 and GRAM domain-containing protein At1g03375	AT1G03370.1	C2 calcium/lipid-binding and GRAM domain containing protein 	LOC_Os06g19400.1	"GRAM and C2 domains containing protein, putative, expressed"	Medtr2g032960.1	C2; GRAM; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205929.1.S1_at	A	A1TS	POPTR_0006s00520	POPTR_0006s00520 (11)	scaffold_6:263935-264493(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205930.1.S1_at	A	A1MS	POPTR_0006s00540	POPTR_0006s00540 (9)	scaffold_6:280969-282592(+) (9)	NA	NA	NA	AT5G47760.1	2-phosphoglycolate phosphatase 2 	LOC_Os09g08660.1	"4-nitrophenylphosphatase, putative, expressed"	Medtr2g032900.1	"HAD-superfamily hydrolase, subfamily IIA "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205931.1.S1_at	A	A1TS	POPTR_0006s00580	POPTR_0006s00580 (11)	scaffold_6:304382-305988(-) (11)	NA	NA	NA	AT5G47740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os06g18820.1	"serine threonine kinase, putative, expressed"	AC233669_2.1	hypothetical protein AC233669.2 8999-10267 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205932.1.S1_at	A	A1TS	POPTR_0006s00600	POPTR_0006s00600 (11)	scaffold_6:318059-318629(-) (11)	NA	NA	NA	AT1G12150.1	Plant protein of unknown function (DUF827) 	LOC_Os12g17310.1	"prefoldin, putative, expressed"	Medtr2g032780.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205933.1.S1_at	A	A1TS	POPTR_0006s00610	POPTR_0006s00610 (11)	scaffold_6:325241-325933(+) (11)	NA	Q651X6	Cellulose synthase-like protein E6	AT1G55850.1	cellulose synthase like E1 	LOC_Os09g30130.1	"CSLE6 - cellulose synthase-like family E, expressed"	Medtr3g079530.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.205934.1.S1_at	A	A1TS	POPTR_0006s00650	POPTR_0006s00650 (11)	scaffold_6:340975-341064(-) (11)	NA	Q8LFN9	Probable ADP-ribosylation factor GTPase-activating protein AGD13	AT5G47710.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os09g07800.1	expressed protein	Medtr2g032750.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205935.1.S1_at	A	A1MS	POPTR_0006s00660	POPTR_0006s00660 (11)	scaffold_6:345746-346473(-) (11)	NA	NA	NA	AT5G47690.2	binding 	LOC_Os06g17840.1	expressed protein	AC233669_9.1	"HEAT, putative AC233669.2 33216-42211 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205936.1.S1_at	A	A1TS	POPTR_0006s00670	POPTR_0006s00670 (11)	scaffold_6:350277-350959(-) (11)	NA	Q5F3U9	Sister chromatid cohesion protein PDS5 homolog B	AT5G47690.1	binding 	LOC_Os06g17840.1	expressed protein	Medtr2g032740.1	"HEAT, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205937.1.S1_at	A	A1TS	POPTR_0006s00680	POPTR_0006s00680 (11)	scaffold_6:362537-363503(+) (11)	NA	O14214	tRNA (guanine-N(1)-)-methyltransferase	AT5G47680.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g49360.1	"RNA methyltransferase domain-containing protein 2, putative, expressed"	Medtr2g032680.1	tRNA (guanine-N1-)-methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205937.1.S1_x_at	A	A1TS	POPTR_0006s00680	POPTR_0006s00680 (11)	scaffold_6:362460-363531(+) (11)	NA	O14214	tRNA (guanine-N(1)-)-methyltransferase	AT5G47680.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g49360.1	"RNA methyltransferase domain-containing protein 2, putative, expressed"	Medtr2g032680.1	tRNA (guanine-N1-)-methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205938.1.S1_at	A	A1TS	POPTR_0006s00690	POPTR_0006s00690 (11)	scaffold_6:365299-365574(-) (11)	NA	Q84W66	Nuclear transcription factor Y subunit B-6	AT5G47670.1	"nuclear factor Y, subunit B6 "	LOC_Os02g49370.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr1g046630.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.205938.1.S1_s_at	A	A2TS	POPTR_0006s00690	POPTR_0016s00740 (11)//POPTR_0006s00690 (11)	scaffold_16:270826-271091(-) (11)//scaffold_6:365347-365612(-) (11)	NA	Q84W66	Nuclear transcription factor Y subunit B-6	AT5G47670.1	"nuclear factor Y, subunit B6 "	LOC_Os02g49370.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr1g046630.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.205938.1.S1_x_at	A	A1TS	POPTR_0006s00690	POPTR_0006s00690 (11)	scaffold_6:365299-365574(-) (11)	NA	Q84W66	Nuclear transcription factor Y subunit B-6	AT5G47670.1	"nuclear factor Y, subunit B6 "	LOC_Os02g49370.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr1g046630.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.205939.1.S1_at	A	A1TS	POPTR_0006s00700	POPTR_0006s00700 (11)	scaffold_6:370711-371080(+) (11)	NA	O65567	"Pentatricopeptide repeat-containing protein At4g30825, chloroplastic"	AT4G30825.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g25550.1	"pentatricopeptide, putative, expressed"	Medtr2g073980.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205940.1.S1_at	A	A1TS	POPTR_0006s00710	POPTR_0006s00710 (11)	scaffold_6:374237-374952(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT5G47660.1	Homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205941.1.S1_at	A	A1TS	POPTR_0006s00770	POPTR_0006s00770 (11)	scaffold_6:408520-409484(+) (11)	NA	Q9M2A0	"ATPase 8, plasma membrane-type"	AT3G42640.1	H(+)-ATPase 8 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.205942.1.S1_at	A	A1TS	POPTR_0006s00800	POPTR_0006s00800 (11)	scaffold_6:441022-441731(-) (11)	NA	O48921	"Cytochrome P450 97B2, chloroplastic"	AT4G15110.1	"cytochrome P450, family 97, subfamily B, polypeptide 3 "	LOC_Os02g07680.1	"cytochrome P450, putative, expressed"	Medtr5g009130.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.205943.1.S1_at	A	A1MS	POPTR_0006s00830	POPTR_0006s00830 (11)	scaffold_6:458520-459112(-) (11)	NA	Q56XR6	Pentatricopeptide repeat-containing protein At5g46680	AT5G46680.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os02g55020.1	"uncharacterized PPR-repeat protein, putative, expressed"	Medtr7g025500.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205944.1.S1_at	A	A1TS	POPTR_0006s00840	POPTR_0006s00840 (11)	scaffold_6:465066-465308(+) (11)	NA	Q6L8G0	Zinc transporter 5	AT1G05300.1	zinc transporter 5 precursor 	LOC_Os05g39560.1	"metal cation transporter, putative, expressed"	Medtr3g107170.3	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.205944.1.S1_s_at	A	A3TS	POPTR_0006s00860	POPTR_0006s00860 (11)//POPTR_0006s00870 (11)//POPTR_0006s00840 (10)	scaffold_6:464883-465243(+) (10)//scaffold_6:478439-478802(+) (11)//scaffold_6:482479-482842(+) (11)	NA	Q6L8G0	Zinc transporter 5	AT1G05300.1	zinc transporter 5 precursor 	LOC_Os05g39560.1	"metal cation transporter, putative, expressed"	Medtr3g107170.2	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.205946.1.S1_at	A	A1TS	POPTR_0006s00870	POPTR_0006s00870 (11)	scaffold_6:482032-482450(+) (11)	NA	Q6L8G0	Zinc transporter 5	AT1G05300.1	zinc transporter 5 precursor 	LOC_Os07g12890.2	"metal cation transporter, putative, expressed"	Medtr3g107170.2	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.205947.1.S1_at	A	A1TS	POPTR_0006s00960	POPTR_0006s00960 (11)	scaffold_6:537119-537686(-) (11)	NA	Q9LIE7	"Pentatricopeptide repeat-containing protein At3g22150, chloroplastic"	AT3G22150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g51350.1	"pentatricopeptide, putative, expressed"	Medtr5g106500.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205948.1.S1_at	A	A1TS	POPTR_0006s00960	POPTR_0006s00960 (11)	scaffold_6:538212-538652(-) (11)	NA	Q9LIE7	"Pentatricopeptide repeat-containing protein At3g22150, chloroplastic"	AT3G22150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g51350.1	"pentatricopeptide, putative, expressed"	Medtr5g106500.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205949.1.S1_a_at	A	A1TA	POPTR_0006s00990	POPTR_0006s00990 (11)	scaffold_6:553513-553966(+) (11)//scaffold_6:553642-554407(+) (10)//scaffold_6:553705-554533(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205950.1.S1_at	A	A1TS	POPTR_0006s01050	POPTR_0006s01050 (11)	scaffold_6:596712-597835(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205951.1.S1_at	A	A1TS	POPTR_0006s01090	POPTR_0006s01090 (11)	scaffold_6:617376-617966(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205952.1.S1_at	A	A1TS	POPTR_0006s01110	POPTR_0006s01110 (10)	scaffold_6:622343-622668(-) (10)	NA	NA	NA	AT1G12064.1	unknown protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g029730.1	TNFR/CD27/30/40/95 cysteine-rich region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205953.1.S1_at	A	A1TS	POPTR_0006s01120	POPTR_0006s01120 (11)	scaffold_6:623705-624221(+) (11)	NA	Q9FJ74	Probable long-chain-alcohol O-fatty-acyltransferase 3	AT5G55360.1	MBOAT (membrane bound O-acyl transferase) family protein 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr3g076460.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205954.1.S1_at	A	A1TS	POPTR_0006s01130	POPTR_0006s01130 (11)	scaffold_6:626681-626966(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205955.1.S1_at	A	A1TS	POPTR_0006s01140	POPTR_0006s01140 (11)	scaffold_6:632777-633233(-) (11)	NA	Q9SV07	Acyl-CoA--sterol O-acyltransferase 1	AT3G51970.1	acyl-CoA sterol acyl transferase 1 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr3g076460.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205956.1.S1_at	A	A1TS	POPTR_0006s01230	POPTR_0006s01230 (11)	scaffold_6:684275-685211(+) (11)	NA	O74503	Upstream activation factor subunit spp27	AT4G22360.1	SWIB complex BAF60b domain-containing protein 	LOC_Os08g39310.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr3g076380.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205956.1.S1_s_at	A	A1TS	POPTR_0006s01230	POPTR_0006s01230 (11)	scaffold_6:684243-685266(+) (11)	NA	O74503	Upstream activation factor subunit spp27	AT4G22360.1	SWIB complex BAF60b domain-containing protein 	LOC_Os08g39310.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr3g076380.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205957.1.S1_at	A	A1TS	POPTR_0006s01240	POPTR_0006s01240 (10)	scaffold_6:687179-688264(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr2g033620.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205958.1.S1_at	A	A1TS	POPTR_0006s01250	POPTR_0006s01250 (11)	scaffold_6:700398-700868(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205960.1.S1_at	A	A1TS	POPTR_0006s01270	POPTR_0006s01270 (11)	scaffold_6:723042-723567(+) (11)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205961.1.S1_at	A	A1TS	POPTR_0006s01300	POPTR_0006s01300 (11)	scaffold_6:751389-751908(+) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	AC233662_38.1	Cyclin-like F-box; F-box protein interaction domain AC233662.1 199603-201340 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205962.1.S1_at	A	A1MS	POPTR_0006s01330	POPTR_0006s01330 (9)	scaffold_6:773803-774326(-) (9)	NA	Q9SU29	E3 ubiquitin-protein ligase UPL5	AT4G12570.1	ubiquitin protein ligase 5 	LOC_Os09g31090.2	"HECT-domain domain containing protein, expressed"	Medtr8g147800.1	HECT; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.205963.1.S1_s_at	A	A2TS	POPTR_0006s01330	POPTR_0016s05980 (11)//POPTR_0006s01330 (11)	scaffold_16:3913917-3914100(+) (11)//scaffold_6:776066-776249(-) (11)	NA	Q9SU29	E3 ubiquitin-protein ligase UPL5	AT4G12570.1	ubiquitin protein ligase 5 	LOC_Os09g31090.2	"HECT-domain domain containing protein, expressed"	Medtr8g147800.1	HECT; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.205963.1.S1_x_at	A	A1TS	POPTR_0006s01330	POPTR_0006s01330 (11)	scaffold_6:775811-776283(-) (11)	NA	Q9SU29	E3 ubiquitin-protein ligase UPL5	AT4G12570.1	ubiquitin protein ligase 5 	LOC_Os09g31090.2	"HECT-domain domain containing protein, expressed"	Medtr8g147800.1	HECT; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.205964.1.S1_at	A	A1TS	POPTR_0006s01340	POPTR_0006s01340 (11)	scaffold_6:782171-782848(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205965.1.S1_at	A	A1TS	POPTR_0006s01350	POPTR_0006s01350 (11)	scaffold_6:788035-788641(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	NA	NA	Medtr2g029950.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205966.1.S1_at	A	A1TS	POPTR_0006s01370	POPTR_0006s01370 (11)	scaffold_6:795835-796353(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27570.1	"OsFBA3 - F-box and FBA domain containing protein, expressed"	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205966.1.S1_s_at	A	A1TS	POPTR_0006s01370	POPTR_0006s01370 (11)	scaffold_6:795910-796267(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27570.1	"OsFBA3 - F-box and FBA domain containing protein, expressed"	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205967.1.S1_a_at	A	A1MS	POPTR_0006s01380	POPTR_0006s01380 (11)	scaffold_6:799019-799128(-) (11)//scaffold_6:799076-799185(-) (11)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205967.1.S1_at	A	A1MS	POPTR_0006s01380	POPTR_0006s01380 (11)	scaffold_6:799205-799349(-) (11)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205967.1.S1_x_at	A	A1MS	POPTR_0006s01380	POPTR_0006s01380 (11)	scaffold_6:799057-799349(-) (11)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205968.1.S1_at	A	A1TS	POPTR_0006s01390	POPTR_0006s01390 (11)	scaffold_6:809664-811159(-) (11)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205969.1.S1_at	A	A1TS	POPTR_0006s01420	POPTR_0006s01420 (11)	scaffold_6:839008-839513(-) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205970.1.S1_at	A	A1TS	POPTR_0006s01410	POPTR_0006s01410 (10)	scaffold_6:835827-836367(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205971.1.S1_s_at	A	A3TS	POPTR_0006s01430	POPTR_0006s01440 (11)//POPTR_0006s01430 (11)//POPTR_0006s01470 (11)	scaffold_6:848134-848687(-) (11)//scaffold_6:857774-858327(-) (11)//scaffold_6:874592-875145(-) (11)	NA	NA	NA	AT5G45530.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205972.1.S1_at	A	A1TS	POPTR_0006s01460	POPTR_0006s01460 (11)	scaffold_6:870236-870555(-) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205973.1.S1_at	A	A1TS	POPTR_0006s01510	POPTR_0006s01510 (10)	scaffold_6:900948-902292(+) (11)	NA	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT2G33170.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr5g091330.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.205974.1.S1_at	A	A1TS	POPTR_0006s01510	POPTR_0006s01510 (10)	scaffold_6:907184-909281(+) (10)	NA	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT2G33170.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr5g091330.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.205975.1.S1_at	A	A1TS	POPTR_0006s01520	POPTR_0006s01520 (11)	scaffold_6:911984-912963(+) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205977.1.S1_at	A	A1TS	POPTR_0006s01540	POPTR_0006s01540 (11)	scaffold_6:932739-933844(+) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.205978.1.S1_at	A	A1TS	POPTR_0006s01550	POPTR_0006s01550 (11)	scaffold_6:937824-938385(+) (11)	NA	Q38834	Disease resistance RPP13-like protein 4	AT3G50950.1	HOPZ-ACTIVATED RESISTANCE 1 	LOC_Os11g45050.1	"NBS-LRR disease resistance protein, putative, expressed"	Medtr3g092270.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.205979.1.S1_at	A	A1TS	POPTR_0006s01580	POPTR_0006s01580 (11)	scaffold_6:957650-957916(-) (11)	NA	Q6TPK4	Cysteine proteinase inhibitor 1	AT5G47550.1	Cystatin/monellin superfamily protein 	NA	NA	Medtr2g030120.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.205980.1.S1_at	A	A1TS	POPTR_0006s01620	POPTR_0006s01620 (9)	scaffold_6:996366-996416(+) (9)	NA	O22193	U-box domain-containing protein 4	AT4G16490.1	ARM repeat superfamily protein 	LOC_Os07g39590.1	"spotted leaf 11, putative, expressed"	Medtr2g030200.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205981.1.S1_at	A	A1TS	POPTR_0006s01630	POPTR_0006s01630 (11)	scaffold_6:999404-999520(-) (11)	NA	O23492	Inositol transporter 4	AT4G16480.1	inositol transporter 4 	LOC_Os04g43210.3	"transporter family protein, putative, expressed"	Medtr2g030250.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.205981.1.S1_s_at	A	A1TS	POPTR_0006s01630	POPTR_0006s01630 (11)	scaffold_6:999548-1000146(-) (11)	NA	O23492	Inositol transporter 4	AT4G16480.1	inositol transporter 4 	LOC_Os04g43210.3	"transporter family protein, putative, expressed"	Medtr2g030250.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.205982.1.S1_at	A	A1TS	POPTR_0006s01640	POPTR_0006s01640 (11)	scaffold_6:1004258-1004954(-) (11)	NA	O23492	Inositol transporter 4	AT4G16480.1	inositol transporter 4 	LOC_Os04g43210.3	"transporter family protein, putative, expressed"	Medtr2g030250.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.205983.1.S1_at	A	A1TS	POPTR_0006s01660	POPTR_0006s01660 (11)	scaffold_6:1019163-1019199(+) (11)	NA	Q8S5M8	Putative yippee-like protein Os10g0369500	AT3G08990.2	Yippee family putative zinc-binding protein 	LOC_Os10g22410.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205983.1.S1_s_at	A	A1TS	POPTR_0006s01660	POPTR_0006s01660 (11)	scaffold_6:1019106-1019382(+) (11)	NA	Q8S5M8	Putative yippee-like protein Os10g0369500	AT3G08990.2	Yippee family putative zinc-binding protein 	LOC_Os10g22410.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205984.1.S1_at	A	A1TS	POPTR_0006s01670	POPTR_0006s01670 (11)	scaffold_6:1025148-1025597(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205985.1.S1_at	A	A1TS	POPTR_0006s01750	POPTR_0006s01750 (11)	scaffold_6:1070780-1071122(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g030510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205986.1.S1_at	A	A1TS	POPTR_0006s01760	POPTR_0006s01760 (11)	scaffold_6:1072346-1074141(-) (11)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g015270.1	"ATPase, E1-E2 type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205987.1.S1_at	A	A1TS	POPTR_0006s01770	POPTR_0006s01770 (11)	scaffold_6:1074931-1075239(-) (11)	NA	NA	NA	AT5G26730.1	Fasciclin-like arabinogalactan family protein 	LOC_Os12g13160.1	conserved hypothetical protein	Medtr5g105080.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205988.1.S1_at	A	A1TS	POPTR_0006s01800	POPTR_0006s01800 (11)	scaffold_6:1087081-1087758(+) (11)	NA	Q9H6Q4	Cytosolic Fe-S cluster assembly factor NARFL	AT4G16440.1	ferredoxin hydrogenases 	LOC_Os03g53750.1	"nuclear prelamin A recognition factor, putative, expressed"	Medtr3g162950.1	Iron hydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205989.1.S1_at	A	A1TS	POPTR_0006s01830	POPTR_0006s01830 (10)	scaffold_6:1109408-1109532(+) (11)	NA	Q9ATB4	Transcriptional adapter ADA2b	AT4G16420.2	homolog of yeast ADA2 2B 	LOC_Os03g53960.2	"transcriptional adaptor, putative, expressed"	Medtr2g030360.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; SWIRM; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205989.1.S1_s_at	A	A1TS	POPTR_0006s01830	POPTR_0006s01830 (11)	scaffold_6:1109306-1109413(+) (11)	NA	Q9ATB4	Transcriptional adapter ADA2b	AT4G16420.2	homolog of yeast ADA2 2B 	LOC_Os03g53960.2	"transcriptional adaptor, putative, expressed"	Medtr2g030360.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; SWIRM; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205990.1.S1_at	A	A1TS	POPTR_0006s01840	POPTR_0006s01840 (11)	scaffold_6:1112582-1113616(-) (11)	NA	NA	NA	AT5G55600.3	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os07g41640.1	"agenet domain-containing protein, putative, expressed"	Medtr2g030390.1	Bromo adjacent region; Xylose isomerase; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.205991.1.S1_at	A	A1TS	POPTR_0006s01860	POPTR_0006s01860 (11)	scaffold_6:1121347-1121622(-) (11)	NA	NA	NA	AT1G32583.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g28750.1	"TPD1, putative, expressed"	Medtr3g150890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205992.1.S1_at	A	A1TS	POPTR_0006s01870	POPTR_0006s01870 (11)	scaffold_6:1130263-1130300(+) (11)	NA	NA	NA	AT5G41761.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g33200.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205992.1.S1_x_at	A	A1TS	POPTR_0006s01870	POPTR_0006s01870 (11)	scaffold_6:1130246-1130397(+) (11)	NA	NA	NA	AT5G41761.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g33200.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205993.1.S1_at	A	A1TS	POPTR_0006s01880	POPTR_0006s01880 (11)	scaffold_6:1134149-1134344(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205994.1.S1_at	A	A1TS	POPTR_0006s01910	POPTR_0006s01910 (11)	scaffold_6:1145995-1146435(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205996.1.S1_at	A	A1TS	POPTR_0006s02150	POPTR_0006s02150 (11)	scaffold_6:1403043-1403698(-) (11)	NA	Q9LIE5	Protein FAR-RED ELONGATED HYPOCOTYL 3	AT3G22170.2	far-red elongated hypocotyls 3 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.205997.1.S1_s_at	A	A1TS	POPTR_0006s02180	POPTR_0006s02180 (11)	scaffold_6:1426891-1427100(+) (11)	NA	Q9SJR0	Ethylene-responsive transcription factor ERF024	AT2G36450.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g45420.1	"AP2 domain containing protein, expressed"	Medtr5g012990.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.205999.1.S1_at	A	A1TS	POPTR_0006s02220	POPTR_0006s02220 (11)	scaffold_6:1457574-1457991(-) (11)	NA	Q9FHZ1	Scarecrow-like protein 23	AT5G41920.1	GRAS family transcription factor 	LOC_Os07g38030.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g103580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206000.1.S1_at	A	A1TS	POPTR_0006s02260	POPTR_0006s02260 (11)	scaffold_6:1481251-1481676(+) (11)	NA	P11140	Abrin-a	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206002.1.S1_at	A	A1TS	POPTR_0006s02290	POPTR_0006s02290 (11)	scaffold_6:1509148-1510725(-) (11)	NA	Q7ZUW2	Hypoxia up-regulated protein 1	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g48110.1	"DnaK family protein, putative, expressed"	Medtr3g068340.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206003.1.S1_at	A	A1TS	POPTR_0006s02300	POPTR_0006s02300 (11)	scaffold_6:1517817-1518463(-) (11)	NA	Q05047	Secologanin synthase	AT2G46950.1	"cytochrome P450, family 709, subfamily B, polypeptide 2 "	LOC_Os07g44140.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.206004.1.S1_s_at	A	A1TS	POPTR_0006s02290	POPTR_0006s02290 (11)	scaffold_6:1514762-1515091(-) (11)	NA	Q7ZUW2	Hypoxia up-regulated protein 1	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g48110.1	"DnaK family protein, putative, expressed"	Medtr3g068340.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206005.1.S1_at	A	A1TS	POPTR_0006s02410	POPTR_0006s02410 (11)	scaffold_6:1582947-1584340(+) (11)	NA	Q8LBM2	Protein TIFY 5A	AT1G30135.1	jasmonate-zim-domain protein 8 	NA	NA	Medtr4g154880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206006.1.S1_at	A	A1TS	POPTR_0006s02430	POPTR_0006s02430 (11)	scaffold_6:1592872-1595193(-) (11)	NA	Q80V62	Fanconi anemia group D2 protein homolog	AT4G14970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 257 Blast hits to 164 proteins in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). 	LOC_Os07g05960.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206007.1.S1_at	A	A1TS	POPTR_0006s02460	POPTR_0006s02460 (11)	scaffold_6:1613687-1614948(-) (11)	NA	NA	NA	AT4G14965.1	membrane-associated progesterone binding protein 4 	LOC_Os03g10790.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206008.1.S1_at	A	A1TS	POPTR_0006s02490	POPTR_0006s02490 (11)	scaffold_6:1621904-1622749(-) (11)	NA	NA	NA	AT5G60580.3	RING/U-box superfamily protein 	LOC_Os06g46366.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr4g081620.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206009.1.S1_s_at	A	A1TS	POPTR_0006s02500	POPTR_0006s02500 (11)	scaffold_6:1631262-1631372(-) (11)	NA	Q9LUW5	DEAD-box ATP-dependent RNA helicase 53	AT3G22330.1	putative mitochondrial RNA helicase 2 	LOC_Os07g05050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g097200.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.206009.1.S1_x_at	A	A1TS	POPTR_0006s02500	POPTR_0006s02500 (11)	scaffold_6:1630286-1631284(-) (11)	NA	Q9LUW5	DEAD-box ATP-dependent RNA helicase 53	AT3G22330.1	putative mitochondrial RNA helicase 2 	LOC_Os07g05050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g097200.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.206010.1.S1_at	A	A1TS	POPTR_0006s02540	POPTR_0006s02540 (11)	scaffold_6:1647800-1649215(-) (11)	NA	P21342	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha	AT1G20950.1	Phosphofructokinase family protein 	LOC_Os02g48360.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed"	CU179634_16.1	Phosphofructokinase CU179634.6 68696-64993 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206011.1.S1_s_at	A	A1TS	POPTR_0006s02550	POPTR_0006s02550 (11)	scaffold_6:1655676-1656025(+) (11)	NA	Q9LFT8	Cyclin-dependent kinase C-1	AT5G10270.1	cyclin-dependent kinase C;1 	LOC_Os01g72790.1	"cyclin-dependent kinase, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206012.1.S1_at	A	A1TS	POPTR_0006s02570	POPTR_0006s02570 (11)	scaffold_6:1659723-1660671(-) (11)	NA	NA	NA	AT3G56891.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g02860.1	"heavy metal-associated domain containing protein, expressed"	Medtr6g017960.1	"metal ion binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206013.1.S1_at	A	A1MS	POPTR_0006s02600	POPTR_0006s02600 (9)	scaffold_6:1671520-1673480(+) (9)	NA	NA	NA	AT2G41050.1	PQ-loop repeat family protein / transmembrane family protein 	LOC_Os01g16170.5	"PQ loop repeat domain containing protein, expressed"	Medtr6g017950.1	Cystinosin/ERS1p repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206014.1.S1_at	A	A1TS	POPTR_0006s02620	POPTR_0006s02620 (11)	scaffold_6:1678637-1679943(+) (11)	NA	Q3MG79	Putative ribosome biogenesis GTPase RsgA	AT1G67440.1	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os04g31270.1	"EMB1688, putative, expressed"	Medtr3g103630.1	GTPase EngC 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.206014.1.S1_x_at	A	A1TS	POPTR_0006s02620	POPTR_0006s02620 (11)	scaffold_6:1678679-1679943(+) (11)	NA	Q3MG79	Putative ribosome biogenesis GTPase RsgA	AT1G67440.1	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os04g31270.1	"EMB1688, putative, expressed"	Medtr3g103630.1	GTPase EngC 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.206015.1.S1_at	A	A1MS	POPTR_0006s02630	POPTR_0006s02630 (11)	scaffold_6:1683013-1683535(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206016.1.S1_at	A	A1MS	POPTR_0006s02650	POPTR_0006s02650 (11)	scaffold_6:1692483-1692835(+) (11)	NA	Q14103	Heterogeneous nuclear ribonucleoprotein D0	AT2G41060.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g54440.3	"RNA binding protein, putative, expressed"	Medtr7g104960.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.206017.1.S1_at	A	A1TS	POPTR_0006s02670	POPTR_0006s02670 (11)	scaffold_6:1698319-1699781(+) (11)	NA	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os05g41070.1	"bZIP transcription factor, putative, expressed"	Medtr7g104860.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.206019.1.S1_at	A	A1TS	POPTR_0006s02700	POPTR_0006s02700 (11)	scaffold_6:1717092-1718568(-) (11)	NA	A7SMW7	"L-2-hydroxyglutarate dehydrogenase, mitochondrial"	AT3G56840.1	FAD-dependent oxidoreductase family protein 	LOC_Os01g59490.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr6g017840.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.206020.1.S1_at	A	A1TS	POPTR_0006s02710	POPTR_0006s02710 (11)	scaffold_6:1726879-1728239(+) (11)	NA	Q94BZ1	Protein ZINC INDUCED FACILITATOR-LIKE 1	AT5G13750.1	zinc induced facilitator-like 1 	LOC_Os11g04030.1	"major facilitator superfamily antiporter, putative, expressed"	Medtr8g073830.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206021.1.S1_at	A	A1TS	POPTR_0006s02720	POPTR_0006s02720 (11)	scaffold_6:1729611-1731197(+) (11)	NA	NA	NA	AT3G56820.1	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os01g59520.3	"cupin, RmlC-type, putative, expressed"	Medtr7g104810.1	"Cupin, RmlC-type, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206022.1.S1_at	A	A1TS	POPTR_0006s02730	POPTR_0006s02730 (11)	scaffold_6:1733108-1733661(+) (11)	NA	Q9FYE1	Metacaspase-9	AT5G04200.1	metacaspase 9 	LOC_Os11g04010.1	"ICE-like protease p20 domain containing protein, putative, expressed"	Medtr7g104790.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.206023.1.S1_at	A	A1TS	POPTR_0006s02740	POPTR_0006s02740 (11)	scaffold_6:1735637-1738329(+) (11)	NA	NA	NA	AT3G56810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g104760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206025.1.S1_at	A	A1MS	POPTR_0006s02820	POPTR_0006s02820 (9)	scaffold_6:1775751-1776399(-) (9)	NA	Q9M1K5	Probable S-acyltransferase At3g56930	AT3G56930.1	DHHC-type zinc finger family protein 	LOC_Os12g03730.1	"zinc finger DHHC domain-containing protein, putative"	Medtr7g105150.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.206025.1.S1_s_at	A	A1TS	POPTR_0006s02820	POPTR_0006s02820 (10)	scaffold_6:1775871-1776379(-) (11)	NA	Q9M1K5	Probable S-acyltransferase At3g56930	AT3G56930.1	DHHC-type zinc finger family protein 	LOC_Os12g03730.1	"zinc finger DHHC domain-containing protein, putative"	Medtr7g105150.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.206026.1.S1_at	A	A1TS	POPTR_0006s02830	POPTR_0006s02830 (11)	scaffold_6:1781976-1782661(-) (11)	NA	Q5PNZ1	Probable S-acyltransferase At5g05070	AT5G05070.1	DHHC-type zinc finger family protein 	LOC_Os12g03730.1	"zinc finger DHHC domain-containing protein, putative"	Medtr7g105170.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.206028.1.S1_at	A	A1TS	POPTR_0006s02930	POPTR_0006s02930 (11)	scaffold_302:20896-21012(-) (9)//scaffold_6:1858826-1859030(-) (11)	NA	NA	NA	AT3G10480.1	NAC domain containing protein 50 	LOC_Os08g44820.3	"no apical meristem protein, putative, expressed"	Medtr2g107430.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.206028.1.S1_x_at	A	A1TS	POPTR_0006s02930	POPTR_0006s02930 (11)	scaffold_6:1858777-1859030(-) (11)	NA	NA	NA	AT3G10480.1	NAC domain containing protein 50 	LOC_Os08g44820.3	"no apical meristem protein, putative, expressed"	Medtr2g107430.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.206029.1.S1_at	A	A1TS	POPTR_0006s02940	POPTR_0006s02940 (10)	scaffold_6:1861882-1862999(+) (10)	NA	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.206030.1.S1_at	A	A1TS	POPTR_0006s02950	POPTR_0006s02950 (11)	scaffold_6:1867187-1867226(+) (11)	NA	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.206031.1.S1_at	A	A1TS	POPTR_0006s02960	POPTR_0006s02960 (11)	scaffold_6:1870612-1870956(+) (11)	NA	Q39266	Zinc finger protein 7	AT5G10970.1	C2H2 and C2HC zinc fingers superfamily protein 	NA	NA	AC225611_12.1	"Zinc finger, C2H2-type AC225611.10 76760-75060 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.206032.1.S1_at	A	A1TS	POPTR_0006s02970	POPTR_0006s02970 (11)	scaffold_6:1880600-1881522(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity	NA
PtpAffx.206033.1.S1_at	A	A1TS	POPTR_0006s02980	POPTR_0006s02980 (11)	scaffold_6:1886833-1887532(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g53590.1	"3-5 exonuclease domain-containing protein, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206034.1.S1_at	A	A1TS	POPTR_0006s03000	POPTR_0006s03000 (11)	scaffold_6:1893840-1894224(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206035.1.S1_at	A	A1TS	POPTR_0006s03010	POPTR_0006s03010 (11)	scaffold_6:1896163-1896838(-) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT2G40850.1	phosphoinositide 4-kinase gamma 1 	LOC_Os04g57300.2	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr8g077330.1	"Phosphatidylinositol 3- and 4-kinase, catalytic "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.206037.1.S1_at	A	A1TS	POPTR_0006s03150	POPTR_0006s03150 (9)	scaffold_6:1991377-1991955(+) (10)	NA	C0LGT6	LRR receptor-like serine/threonine-protein kinase EFR	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g49920.1	"protein kinase, putative, expressed"	AC159090_8.1	Tyrosine protein kinase AC159090.17 30002-27644 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206038.1.S1_at	A	A1TS	POPTR_0006s03160	POPTR_0006s03160 (11)	scaffold_6:1993777-1994258(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206039.1.S1_s_at	A	A1TS	POPTR_0006s03190	POPTR_0006s03190 (11)	scaffold_6:2010506-2010847(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.206040.1.S1_at	A	A1TS	POPTR_0006s03210	POPTR_0006s03210 (11)	scaffold_6:2035050-2035597(+) (11)	NA	O81117	Cytochrome P450 94A1	AT3G56630.1	"cytochrome P450, family 94, subfamily D, polypeptide 2 "	LOC_Os12g04110.1	"pentatricopeptide, putative"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.206042.1.S1_at	A	A1TS	POPTR_0006s03240	POPTR_0006s03240 (11)	scaffold_6:2051497-2052056(-) (11)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	LOC_Os05g33960.1	"peptide transporter PTR2, putative, expressed"	Medtr7g105690.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.206043.1.S1_at	A	A2TS	POPTR_0340s00200	POPTR_0340s00200 (11)//POPTR_0006s03260 (10)	scaffold_340:1806-2526(-) (11)//scaffold_6:2078582-2079309(+) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os09g37200.1	"transferase family protein, putative, expressed"	Medtr2g008030.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.206044.1.S1_at	A	A1TS	POPTR_0006s03290	POPTR_0006s03290 (11)	scaffold_6:2093018-2093637(+) (11)	NA	Q148K0	Transcription elongation factor A protein 2	AT2G38560.1	transcript elongation factor IIS 	LOC_Os03g60130.2	"transcription elongation factor protein, putative, expressed"	Medtr3g136140.1	"Transcription elongation factor S-II, central region; SPOC "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.206046.1.S1_s_at	A	A1TS	POPTR_0006s03310	POPTR_0006s03310 (11)	scaffold_6:2107721-2108259(-) (11)	NA	Q39818	"Heat shock 22 kDa protein, mitochondrial"	AT4G25200.1	mitochondrion-localized small heat shock protein 23.6 	LOC_Os06g11610.1	"heat shock 22 kDa protein, mitochondrial precursor, putative, expressed"	Medtr7g124360.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206047.1.S1_at	A	A1TS	POPTR_0006s03340	POPTR_0006s03340 (11)	scaffold_6:2120964-2121045(-) (11)	NA	Q940D0	Two-component response regulator ARR1	AT3G10760.1	Homeodomain-like superfamily protein 	LOC_Os05g34110.1	"homeodomain-related, putative, expressed"	Medtr7g105990.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206047.1.S1_s_at	A	A1TS	POPTR_0006s03340	POPTR_0006s03340 (11)	scaffold_6:2121180-2121450(-) (11)	NA	Q940D0	Two-component response regulator ARR1	AT3G10760.1	Homeodomain-like superfamily protein 	LOC_Os05g34110.1	"homeodomain-related, putative, expressed"	Medtr7g105990.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206048.1.S1_at	A	A1TS	POPTR_0006s03350	POPTR_0006s03350 (11)	scaffold_6:2125810-2126728(-) (11)	NA	Q9DBY8	Nuclear valosin-containing protein-like	AT3G56690.1	Cam interacting protein 111 	LOC_Os11g11340.1	"CIP111, putative, expressed"	Medtr7g106020.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.206049.1.S1_at	A	A1TS	POPTR_0006s03360	POPTR_0006s03360 (11)	scaffold_6:2134913-2135512(-) (11)	NA	Q6R8G5	Phosphate transporter PHO1 homolog 5	AT2G03240.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206050.1.S1_at	A	A1TS	POPTR_0006s03410	POPTR_0006s03410 (11)	scaffold_6:2189227-2190514(-) (11)	NA	NA	NA	AT5G05140.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os05g34210.1	expressed protein	Medtr7g106190.4	"Transcription factors TFIIS, elongin A, CRSP70, conserved "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.206051.1.S1_at	A	A1TS	POPTR_0006s03440	POPTR_0006s03440 (11)	scaffold_6:2222418-2223376(+) (11)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr7g020920.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.206052.1.S1_s_at	A	A1TS	POPTR_0006s03450	POPTR_0006s03450 (11)	scaffold_6:2226587-2227173(-) (11)	NA	Q94FT4	Salutaridinol 7-O-acetyltransferase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.206054.1.S1_at	A	A1TS	POPTR_0006s03500	POPTR_0006s03500 (11)	scaffold_6:2269372-2271265(+) (11)	POPTR_0008s20540 (6)	NA	NA	AT1G19485.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g63910.1	"AT hook motif family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206055.1.S1_at	A	A1TS	POPTR_0006s03520	POPTR_0006s03520 (11)	scaffold_6:2287281-2288994(-) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os01g16350.2	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.2	Hydroxymethylglutaryl-coenzyme A lyase active site 	NA	GO:0003824|catalytic activity	NA
PtpAffx.206056.1.S1_s_at	A	A2TS	POPTR_0006s03530	POPTR_0006s03530 (11)//POPTR_0015s05345 (11)	scaffold_15:5713644-5713829(-) (11)//scaffold_6:2293261-2293446(-) (11)	NA	NA	NA	AT2G17845.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g39960.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206058.1.S1_at	A	A1TS	POPTR_0006s03580	POPTR_0006s03580 (11)	scaffold_6:2339147-2339879(+) (11)	NA	P48234	Ribosome biogenesis protein ENP2	AT3G56990.1	embryo sac development arrest 7 	LOC_Os06g03780.1	"NUC153 domain containing protein, expressed"	Medtr2g095380.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206059.1.S1_s_at	A	A1TS	POPTR_0006s03660	POPTR_0006s03660 (11)	scaffold_6:2421707-2422258(-) (11)	NA	Q9ZNZ7	"Ferredoxin-dependent glutamate synthase 1, chloroplastic"	AT5G04140.1	glutamate synthase 1 	LOC_Os07g46460.1	"ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0015930|glutamate synthase activity	NA
PtpAffx.206060.1.S1_at	A	A1TS	POPTR_0006s03690	POPTR_0006s03690 (11)	scaffold_6:2450208-2451514(-) (11)	NA	NA	NA	AT2G41200.1	unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g106960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206061.1.S1_at	A	A1TS	POPTR_0006s03700	POPTR_0006s03700 (10)	scaffold_6:2462442-2464033(+) (10)	NA	P47082	Vacuolar amino acid transporter 1	AT2G41190.1	Transmembrane amino acid transporter family protein 	LOC_Os02g54730.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g106930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206063.1.S1_at	A	A1TS	POPTR_0006s03760	POPTR_0006s03760 (11)	scaffold_6:2520822-2521397(+) (11)	NA	Q9FI99	Cytokinin-N-glucosyltransferase 1	AT5G59590.1	UDP-glucosyl transferase 76E2 	LOC_Os07g13800.1	"cytokinin-N-glucosyltransferase, putative, expressed"	Medtr3g092670.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206065.1.S1_at	A	A1TS	POPTR_0006s03820	POPTR_0006s03820 (11)	scaffold_6:2561078-2563060(+) (11)	NA	Q8DJF2	Ribose-5-phosphate isomerase A	AT1G71100.1	"Ribose 5-phosphate isomerase, type A protein "	LOC_Os04g24140.1	"ribose-5-phosphate isomerase A, putative, expressed"	Medtr1g137480.1	Ribose 5-phosphate isomerase 	"GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0009052|""pentose-phosphate shunt, non-oxidative branch"""	GO:0004751|ribose-5-phosphate isomerase activity	NA
PtpAffx.206066.1.S1_at	A	A1TS	POPTR_0006s03850	POPTR_0006s03850 (11)	scaffold_6:2586570-2588290(+) (11)	NA	Q5ZJQ8	Ubiquitin-associated domain-containing protein 2	AT3G56740.1	Ubiquitin-associated (UBA) protein 	LOC_Os01g16330.1	"OsRhmbd2 - Putative Rhomboid homologue, expressed"	Medtr7g106540.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206068.1.S1_at	A	A1TS	POPTR_0006s03870	POPTR_0006s03870 (11)	scaffold_6:2594954-2597050(-) (11)	NA	Q9UNI6	Dual specificity protein phosphatase 12	AT4G18593.1	dual specificity protein phosphatase-related 	LOC_Os12g03990.1	"dual specificity protein phosphatase, putative, expressed"	Medtr7g106530.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.206069.1.S1_at	A	A1TS	POPTR_0006s03910	POPTR_0006s03910 (10)	scaffold_6:2624058-2625142(-) (10)	NA	Q6RT24	Centromere-associated protein E	AT3G10180.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g35090.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g162930.1	"Kinesin, motor region; Zinc finger, RING-type "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.206070.1.S1_at	A	A1TS	POPTR_0006s03930	POPTR_0006s03930 (11)	scaffold_6:2651550-2653412(-) (11)	NA	P94111	Strictosidine synthase 1	AT2G41290.1	strictosidine synthase-like 2 	LOC_Os12g04424.1	"strictosidine synthase, putative, expressed"	Medtr7g107350.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.206072.1.S1_at	A	A1TS	POPTR_0006s03950	POPTR_0006s03950 (11)	scaffold_6:2681284-2682257(+) (11)	NA	O80366	Two-component response regulator ARR9	AT3G57040.1	response regulator 9 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g039500.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.206074.1.S1_at	A	A1TS	POPTR_0006s03990	POPTR_0006s03990 (11)	scaffold_6:2701864-2703344(-) (11)	NA	Q9YHY6	Condensin complex subunit 1	AT3G57060.2	binding 	LOC_Os07g46540.1	"condensin complex subunit 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206075.1.S1_at	A	A1TS	POPTR_0006s04050	POPTR_0006s04050 (11)	scaffold_6:2737757-2738351(+) (11)	NA	NA	NA	AT1G16390.1	organic cation/carnitine transporter 3 	LOC_Os07g37454.1	"urate anion exchanger, putative, expressed"	Medtr5g087500.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206076.1.S1_at	A	A1TS	POPTR_0006s04070	POPTR_0006s04070 (11)	scaffold_6:2747154-2747189(+) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G50160.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206076.1.S1_s_at	A	A1TS	POPTR_0006s04070	POPTR_0006s04070 (11)	scaffold_6:2746541-2746924(+) (11)	POPTR_0006s04090 (8)	P0C897	Putative UPF0481 protein At3g02645	AT3G50160.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206080.1.S1_at	A	A1TS	POPTR_0006s04110	POPTR_0006s04110 (10)	scaffold_6:2766142-2766512(+) (10)	NA	NA	NA	NA	NA	LOC_Os08g02820.1	plant protein of unknown function domain containing protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206081.1.S1_at	A	A1TS	POPTR_0006s04120	POPTR_0006s04120 (11)	scaffold_6:2770457-2771049(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38380.1	plant protein of unknown function domain containing protein	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206083.1.S1_at	A	A1TS	POPTR_0006s04140	POPTR_0006s04140 (11)	scaffold_6:2780614-2781137(+) (11)//scaffold_6:2807121-2807650(+) (11)	POPTR_0006s04130 (6)	Q9SD53	UPF0481 protein At3g47200	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os11g17720.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067490.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206084.1.S1_at	A	A2TS	POPTR_0006s04150	POPTR_0006s04150 (11)//POPTR_0993s00200 (9)	scaffold_6:2821864-2822403(+) (11)//scaffold_993:1676-2099(-) (9)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os11g33970.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206085.1.S1_at	A	A1TS	POPTR_0006s04160	POPTR_0006s04160 (11)	scaffold_6:2826062-2826275(-) (11)	NA	Q43415	"Lycopene beta cyclase, chloroplastic/chromoplastic"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr7g107170.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.206085.1.S1_x_at	A	A1TS	POPTR_0006s04160	POPTR_0006s04160 (11)	scaffold_6:2825829-2826275(-) (11)	NA	Q43415	"Lycopene beta cyclase, chloroplastic/chromoplastic"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr7g107170.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.206086.1.S1_a_at	A	A1TS	POPTR_0006s04200	POPTR_0006s04200 (11)	scaffold_6:2866618-2866800(+) (11)//scaffold_6:2866729-2866911(+) (11)//scaffold_6:2866840-2867022(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206087.1.S1_at	A	A1TS	POPTR_0006s04210	POPTR_0006s04210 (11)	scaffold_6:2875038-2875595(-) (11)	NA	Q84TJ0	Probable methyltransferase PMT6	AT3G10200.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g31480.2	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.206089.1.S1_at	A	A1TS	POPTR_0006s04250	POPTR_0006s04250 (11)	scaffold_6:2922543-2922894(+) (11)	NA	NA	NA	AT5G04020.1	calmodulin binding 	LOC_Os01g72190.1	expressed protein	Medtr7g107540.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206090.1.S1_at	A	A1TS	POPTR_0006s04270	POPTR_0006s04270 (11)	scaffold_6:2926097-2926323(-) (11)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.206090.1.S1_x_at	A	A1TS	POPTR_0006s04270	POPTR_0006s04270 (11)	scaffold_6:2926097-2926456(-) (11)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.206091.1.S1_at	A	A1TS	POPTR_0006s04300	POPTR_0006s04300 (11)	scaffold_6:2936937-2937221(-) (11)	NA	P27057	Protein GAST1	AT1G74670.1	Gibberellin-regulated family protein 	LOC_Os05g31280.1	"GASR5 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr7g107650.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206092.1.S1_at	A	A1TS	POPTR_0006s04340	POPTR_0006s04340 (9)	scaffold_6:2954942-2955599(+) (10)	NA	Q5EAF6	Probable F-box protein At5g04010	AT5G04010.1	F-box family protein 	LOC_Os01g58670.1	conserved hypothetical protein	Medtr1g062580.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206094.1.S1_at	A	A1TS	POPTR_0006s04350	POPTR_0006s04350 (11)	scaffold_6:2959293-2959863(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206095.1.S1_at	A	A1TS	POPTR_0006s04360	POPTR_0006s04360 (11)	scaffold_6:2965817-2966897(+) (11)	NA	Q6ZW49	PAX-interacting protein 1	AT2G41450.1	N-acetyltransferases;N-acetyltransferases 	LOC_Os05g31254.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g107740.1	GCN5-related N-acetyltransferase; BRCT 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	GO:0005622|intracellular
PtpAffx.206096.1.S1_at	A	A1TS	POPTR_0006s04400	POPTR_0006s04400 (11)	scaffold_6:3000196-3001296(+) (11)	NA	NA	NA	AT3G57200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41451.1); Has 94 Blast hits to 94 proteins in 31 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g13200.1	"abscisic acid insensitive 8, putative, expressed"	Medtr3g026170.1	"ABI8/ELD1/KOB1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206097.1.S1_at	A	A1MS	POPTR_0006s04410	POPTR_0006s04410 (9)	scaffold_6:3003303-3004949(+) (10)	NA	P45951	Apurinic endonuclease-redox protein	AT2G41460.2	apurinic endonuclease-redox protein 	LOC_Os01g58680.1	"apurinic endonuclease-redox protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206099.1.S1_at	A	A1TS	POPTR_0006s04460	POPTR_0006s04460 (11)	scaffold_6:3042655-3043164(-) (11)	NA	Q03773	"Glucan endo-1,3-beta-glucosidase"	AT3G57270.1	"beta-1,3-glucanase 1 "	LOC_Os01g58730.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr4g104140.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.206100.1.S1_s_at	A	A1TS	POPTR_0006s04480	POPTR_0006s04480 (11)	scaffold_6:3053916-3054109(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G28890.2	receptor like protein 43 	LOC_Os01g06836.1	"disease resistance protein SlVe2 precursor, putative"	Medtr5g094280.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.206101.1.S1_at	A	A1TS	POPTR_0006s04520	POPTR_0006s04520 (11)	scaffold_6:3076904-3077003(-) (11)	NA	Q96K37	Solute carrier family 35 member E1	AT5G04160.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr5g088980.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206101.1.S1_s_at	A	A1TS	POPTR_0006s04520	POPTR_0006s04520 (11)	scaffold_6:3076100-3076876(-) (11)	NA	Q96K37	Solute carrier family 35 member E1	AT5G04160.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr5g088980.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206102.1.S1_s_at	A	A1TS	POPTR_0006s04530	POPTR_0006s04530 (11)	scaffold_6:3089823-3090337(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g108250.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006353|transcription termination	GO:0003715|transcription termination factor activity	NA
PtpAffx.206104.1.S1_at	A	A1TS	POPTR_0006s04600	POPTR_0006s04600 (9)	scaffold_6:3144860-3145874(-) (9)	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT4G20990.1	alpha carbonic anhydrase 4 	LOC_Os08g36630.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206105.1.S1_at	A	A1TS	POPTR_0006s04610	POPTR_0006s04610 (11)	scaffold_6:3159211-3160383(-) (11)	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT4G20990.1	alpha carbonic anhydrase 4 	LOC_Os08g36630.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206106.1.S1_at	A	A1TS	POPTR_0006s04650	POPTR_0006s04650 (11)	scaffold_6:3188780-3189573(-) (11)	NA	O22213	Cytokinin dehydrogenase 1	AT2G41510.1	cytokinin oxidase/dehydrogenase 1 	LOC_Os05g31040.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr4g118430.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
PtpAffx.206108.1.S1_at	A	A1TS	POPTR_0006s04730	POPTR_0006s04730 (11)	scaffold_6:3266571-3269007(+) (11)	NA	Q38847	Agamous-like MADS-box protein AGL15	AT3G57390.1	AGAMOUS-like 18 	LOC_Os06g06750.1	"OsMADS5 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g136380.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.206109.1.S1_at	A	A1TS	POPTR_0006s04740	POPTR_0006s04740 (11)	scaffold_6:3274646-3275180(+) (11)	NA	NA	NA	AT2G41660.1	"Protein of unknown function, DUF617 "	LOC_Os02g47980.1	"DUF617 domain containing protein, expressed"	Medtr8g115750.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206110.1.S1_at	A	A1TS	POPTR_0006s04750	POPTR_0006s04750 (11)	scaffold_6:3285937-3286935(+) (11)	NA	Q8R2R6	Mitochondrial GTPase 1	AT2G41670.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g26030.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr7g108550.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.206111.1.S1_at	A	A1TS	POPTR_0006s04800	POPTR_0006s04800 (11)	scaffold_6:3346942-3347309(+) (11)	NA	Q9SAJ5	Pentatricopeptide repeat-containing protein At1g79540	AT1G79540.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os09g02260.1	"PPR repeat containing protein, putative, expressed"	Medtr5g040650.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206112.1.S1_at	A	A1TS	POPTR_0006s04810	POPTR_0006s04810 (11)	scaffold_6:3349494-3350195(+) (11)	NA	Q9M021	Lectin-domain containing receptor kinase A4.1	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206113.1.S1_at	A	A1TS	POPTR_0006s04820	POPTR_0006s04820 (11)	scaffold_6:3353121-3353617(-) (11)	NA	Q8GWK2	AP2-like ethylene-responsive transcription factor At2g41710	AT2G41710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g32270.1	"AP2 domain containing protein, expressed"	Medtr8g144720.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.206114.1.S1_at	A	A1TS	POPTR_0006s04840	POPTR_0006s04840 (11)	scaffold_6:3357265-3358434(-) (11)	NA	Q8RWS8	Pentatricopeptide repeat-containing protein At2g41720	AT2G41720.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g11280.2	"pentatricopeptide containing protein, putative, expressed"	Medtr3g138450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206115.1.S1_at	A	A1TS	POPTR_0006s04850	POPTR_0006s04850 (11)	scaffold_6:3363130-3364187(-) (11)	NA	Q5ZKD5	RRP12-like protein	AT4G23540.1	ARM repeat superfamily protein 	LOC_Os01g72780.1	expressed protein	Medtr1g087200.1	"Protein of unknown function, NUC173 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206116.1.S1_at	A	A1MS	POPTR_0006s04900	POPTR_0006s04900 (9)	scaffold_6:3424736-3425211(+) (9)	NA	Q9LM02	Cycloartenol-C-24-methyltransferase	AT5G13710.2	sterol methyltransferase 1 	LOC_Os07g10600.1	"cycloartenol-C-24-methyltransferase 1, putative, expressed"	Medtr3g039530.1	Methyltransferase type 11 	GO:0006694|steroid biosynthetic process	GO:0008168|methyltransferase activity	NA
PtpAffx.206117.1.S1_at	A	A1TS	POPTR_0006s04910	POPTR_0006s04910 (10)	scaffold_6:3426145-3426478(-) (10)	NA	Q641C9	Cell division cycle protein 123 homolog	AT4G05440.1	temperature sensing protein-related 	NA	NA	Medtr3g016630.1	D123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206118.1.S1_at	A	A1TS	POPTR_0006s04940	POPTR_0006s04940 (11)	scaffold_6:3446117-3447360(-) (11)	NA	NA	NA	AT3G57440.1	unknown protein; Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206119.1.S1_at	A	A1TS	POPTR_0006s04970	POPTR_0006s04970 (11)	scaffold_6:3467421-3469908(-) (11)	NA	Q96B26	Exosome complex exonuclease RRP43	AT1G60080.1	3'-5'-exoribonuclease family protein 	LOC_Os11g20689.1	"exosome complex exonuclease, putative, expressed"	Medtr1g008100.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.206120.1.S1_at	A	A1TS	POPTR_0006s04990	POPTR_0006s04990 (11)	scaffold_6:3479930-3480746(+) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT3G04070.2	NAC domain containing protein 47 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g121260.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.206121.1.S1_at	A	A1TS	POPTR_0006s05010	POPTR_0006s05010 (10)	scaffold_6:3486418-3486571(+) (11)	NA	Q4R7M4	DTW domain-containing protein 2	AT2G41750.1	DTW domain-containing protein 	LOC_Os11g04850.2	"DTW domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206121.1.S1_s_at	A	A1TS	POPTR_0006s05010	POPTR_0006s05010 (11)	scaffold_6:3486050-3486394(+) (11)	NA	Q4R7M4	DTW domain-containing protein 2	AT2G41750.1	DTW domain-containing protein 	LOC_Os11g04850.2	"DTW domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206122.1.S1_at	A	A1TS	POPTR_0006s05020	POPTR_0006s05020 (11)	scaffold_6:3498770-3498903(+) (11)	NA	Q9LVP0	Probable leucine-rich repeat receptor-like protein kinase At5g63930	AT2G41820.1	Leucine-rich repeat protein kinase family protein 	LOC_Os07g10630.1	expressed protein	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.206122.1.S1_x_at	A	A1TS	POPTR_0006s05020	POPTR_0006s05020 (11)	scaffold_6:3498770-3498907(+) (11)	NA	Q9LVP0	Probable leucine-rich repeat receptor-like protein kinase At5g63930	AT2G41820.1	Leucine-rich repeat protein kinase family protein 	LOC_Os07g10630.1	expressed protein	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.206123.1.S1_at	A	A1TS	POPTR_0006s05060	POPTR_0006s05060 (11)	scaffold_6:3510070-3511564(-) (11)	NA	Q5SPP5	Protein EFR3 homolog B	AT2G41830.1	Uncharacterized protein 	LOC_Os02g05040.1	"cyclin-related protein, putative, expressed"	Medtr2g118260.1	"cyclin-related protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206124.1.S1_at	A	A1TS	POPTR_0006s05100	POPTR_0006s05100 (9)	scaffold_6:3540931-3541274(+) (10)	NA	NA	NA	AT3G57500.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g129070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206126.1.S1_at	A	A1TS	POPTR_0006s05170	POPTR_0006s05170 (11)	scaffold_6:3614435-3615014(+) (11)	NA	Q5G1T1	"Pentatricopeptide repeat-containing protein At3g49170, chloroplastic"	AT3G49170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g36620.1	"pentatricopeptide, putative, expressed"	Medtr7g015730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206127.1.S1_at	A	A1TS	POPTR_0006s05210	POPTR_0006s05210 (11)	scaffold_6:3670613-3671860(-) (11)	NA	Q9LVJ7	Nuclear transcription factor Y subunit A-6	AT3G14020.1	"nuclear factor Y, subunit A6 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.206129.1.S1_at	A	A1TS	POPTR_0006s05250	POPTR_0006s05250 (11)	scaffold_6:3721108-3721451(+) (11)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.3	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.206129.1.S1_s_at	A	A1TS	POPTR_0006s05250	POPTR_0006s05250 (11)	scaffold_6:3720909-3721342(+) (11)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.3	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.206130.1.S1_at	A	A1TS	POPTR_0006s05260	POPTR_0006s05260 (10)	scaffold_6:3726673-3727117(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206131.1.S1_at	A	A1TS	POPTR_0006s05270	POPTR_0006s05270 (11)	scaffold_6:3731967-3733564(+) (11)	NA	NA	NA	AT3G57570.1	ARM repeat superfamily protein 	NA	NA	Medtr7g110810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206132.1.S1_at	A	A1TS	POPTR_0006s05300	POPTR_0006s05300 (11)	scaffold_6:3747660-3748222(+) (11)	NA	NA	NA	AT3G52105.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g07870.1	expressed protein	Medtr7g110850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206135.1.S1_at	A	A1TS	POPTR_0006s05320	POPTR_0006s05320 (11)	scaffold_6:3755784-3756350(+) (11)	NA	Q9SVX5	Dehydration-responsive element-binding protein 2F	AT3G57600.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g07830.1	AP2 domain containing protein	Medtr7g110870.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.206136.1.S1_at	A	A1MS	POPTR_0006s05340	POPTR_0006s05340 (10)	scaffold_6:3765793-3766465(-) (10)	NA	Q9M353	Cation/H(+) antiporter 20	AT3G53720.1	cation/H+ exchanger 20 	LOC_Os05g02240.1	"ATCHX20, putative, expressed"	Medtr7g118240.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.206137.1.S1_at	A	A1TS	POPTR_0006s05360	POPTR_0006s05360 (11)	scaffold_6:3781238-3782826(-) (11)	NA	NA	NA	AT3G57630.1	exostosin family protein 	LOC_Os03g07820.1	"exostosin family protein, putative, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.206138.1.S1_at	A	A1TS	POPTR_0006s05390	POPTR_0006s05390 (11)	scaffold_6:3805425-3805775(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206139.1.S1_at	A	A1TS	POPTR_0006s05400	POPTR_0006s05400 (11)	scaffold_6:3810174-3810327(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206140.1.S1_at	A	A1MS	POPTR_0006s05420	POPTR_0006s05420 (10)	scaffold_6:3832561-3834203(+) (10)	NA	P15398	DNA-directed RNA polymerase I subunit rpa1	AT3G57660.1	nuclear RNA polymerase A1 	LOC_Os04g41490.1	"DNA-directed RNA polymerase III subunit RPC1, putative, expressed"	Medtr4g129570.1	"DNA-directed RNA polymerase, subunit beta-prime "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.206141.1.S1_at	A	A1TS	POPTR_0006s05420	POPTR_0006s05420 (11)	scaffold_6:3839757-3840159(+) (11)	NA	P15398	DNA-directed RNA polymerase I subunit rpa1	AT3G57660.1	nuclear RNA polymerase A1 	LOC_Os04g41490.1	"DNA-directed RNA polymerase III subunit RPC1, putative, expressed"	Medtr4g129570.1	"DNA-directed RNA polymerase, subunit beta-prime "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.206142.1.S1_at	A	A1TS	POPTR_0006s05460	POPTR_0006s05460 (11)	scaffold_6:3863786-3863977(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206143.1.S1_at	A	A1TS	POPTR_0006s06350	POPTR_0006s06350 (11)	scaffold_6:4529925-4530599(+) (11)	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT5G20260.1	Exostosin family protein 	LOC_Os02g39960.1	"exostosin family protein, putative"	Medtr8g121610.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.206145.1.S1_at	A	A1MS	POPTR_0006s06410	POPTR_0006s06410 (10)	scaffold_6:4569862-4572466(-) (11)	NA	Q84WU2	Ubiquitin carboxyl-terminal hydrolase 13	AT2G25320.1	TRAF-like family protein 	LOC_Os02g39990.1	expressed protein	Medtr3g137580.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206146.1.S1_x_at	A	A1TS	POPTR_0006s06460	POPTR_0006s06460 (11)	scaffold_6:4614226-4614768(+) (11)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206147.1.S1_at	A	A2MS	POPTR_0004s12800	POPTR_0004s12800 (9)//POPTR_0006s06470 (9)	scaffold_4:11995598-11996985(-) (9)//scaffold_4:12069780-12071783(-) (9)//scaffold_6:4615951-4617367(-) (11)	POPTR_0004s12740 (8)	NA	NA	AT3G53270.6	"Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein "	LOC_Os10g35130.1	expressed protein	Medtr8g121380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206149.1.S1_at	A	A1TS	POPTR_0006s06530	POPTR_0006s06530 (11)	scaffold_6:4724440-4724975(-) (11)	NA	Q9LTF7	Transcription factor MYB82	AT5G52600.1	myb domain protein 82 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206149.1.S1_s_at	A	A2TS	POPTR_0006s06530	POPTR_0006s06530 (11)//POPTR_0018s12780 (11)	scaffold_18:13293410-13293485(-) (11)//scaffold_6:4724863-4724938(-) (11)	NA	Q9LTF7	Transcription factor MYB82	AT5G52600.1	myb domain protein 82 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206149.1.S1_x_at	A	A1TS	POPTR_0006s06530	POPTR_0006s06530 (11)	scaffold_6:4724440-4724975(-) (11)	NA	Q9LTF7	Transcription factor MYB82	AT5G52600.1	myb domain protein 82 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206150.1.S1_at	A	A1MS	POPTR_0006s06540	POPTR_0006s06540 (10)	scaffold_6:4734699-4735745(+) (10)	NA	NA	NA	AT5G20400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08041.1	"iron/ascorbate-dependent oxidoreductase, putative, expressed"	Medtr8g122060.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206151.1.S1_at	A	A1TS	POPTR_0006s06550	POPTR_0006s06550 (9)	scaffold_6:4745898-4746840(+) (9)	NA	Q38829	Auxin-responsive protein IAA11	AT4G28640.3	indole-3-acetic acid inducible 11 	LOC_Os02g57250.2	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g121180.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.206152.1.S1_at	A	A1TS	POPTR_0006s06570	POPTR_0006s06570 (11)	scaffold_6:4777623-4777932(+) (11)	NA	Q27GK7	Topless-related protein 4	AT3G15880.1	WUS-interacting protein 2 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr8g121060.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206153.1.S1_at	A	A1TS	POPTR_0006s06580	POPTR_0006s06580 (11)	scaffold_6:4787345-4787848(+) (11)	NA	Q8S9J8	Probable clathrin assembly protein At4g32285	AT4G32285.2	ENTH/ANTH/VHS superfamily protein 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr8g121020.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.206154.1.S1_at	A	A1TS	POPTR_0006s06600	POPTR_0006s06600 (11)	scaffold_6:4801986-4802690(+) (11)	NA	NA	NA	AT3G24150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206155.1.S1_at	A	A1TS	POPTR_0006s06640	POPTR_0006s06640 (10)	scaffold_6:4814614-4815002(-) (10)	NA	P29602	Cucumber peeling cupredoxin	AT2G31050.1	Cupredoxin superfamily protein 	LOC_Os08g04340.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.206156.1.S1_at	A	A1TS	POPTR_0006s06720	POPTR_0006s06720 (10)	scaffold_6:4859310-4859887(-) (11)	NA	NA	NA	AT5G20200.1	nucleoporin-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206157.1.S1_at	A	A1TS	POPTR_0006s06750	POPTR_0006s06750 (10)	scaffold_3:14474348-14482226(+) (11)//scaffold_6:4884278-4884682(+) (10)	NA	P32359	Trehalase	AT4G24040.1	trehalase 1 	LOC_Os10g37660.1	"trehalase precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206158.1.S1_at	A	A1TS	POPTR_0006s06790	POPTR_0006s06790 (11)	scaffold_6:4931220-4931795(+) (11)	NA	Q9SJN2	Pentatricopeptide repeat-containing protein At2g36240	AT2G36240.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os01g68070.1	"PPR repeat containing protein, expressed"	Medtr7g127410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206159.1.S1_at	A	A1TS	POPTR_0006s06810	POPTR_0006s06810 (11)	scaffold_6:4933620-4934205(+) (11)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.2	"ATPase, E1-E2 type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206161.1.S1_at	A	A1TS	POPTR_0006s06860	POPTR_0006s06860 (11)	scaffold_6:4963748-4964462(-) (11)	NA	Q9NVG8	TBC1 domain family member 13	AT4G13730.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g68010.1	"TBC domain containing protein, expressed"	Medtr8g120430.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.206162.1.S1_at	A	A1TS	POPTR_0006s06870	POPTR_0006s06870 (10)	scaffold_6:4975260-4975629(+) (10)	NA	Q9XI33	Ethylene-responsive transcription factor WIN1	AT1G15360.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g10760.1	"AP2 domain containing protein, expressed"	Medtr8g120410.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.206163.1.S1_at	A	A1TS	POPTR_0006s06890	POPTR_0006s06890 (11)	scaffold_6:4990135-4990827(+) (11)	NA	O80822	Peroxidase 25	AT2G41480.1	Peroxidase superfamily protein 	LOC_Os01g07770.1	"peroxidase precursor, putative"	Medtr8g120300.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.206164.1.S1_at	A	A1TS	POPTR_0006s06900	POPTR_0006s06900 (11)	scaffold_6:4994983-4995514(+) (11)	NA	NA	NA	AT2G26670.1	Plant haem oxygenase (decyclizing) family protein 	LOC_Os06g40080.1	"heme oxygenase 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206165.1.S1_at	A	A1TS	POPTR_0006s06930	POPTR_0006s06930 (11)	scaffold_6:5007231-5008077(+) (11)	NA	Q39173	Probable NADP-dependent oxidoreductase P2	AT5G16990.1	Zinc-binding dehydrogenase family protein 	LOC_Os06g40070.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.206166.1.S1_at	A	A1TS	POPTR_0006s06940	POPTR_0006s06940 (11)	scaffold_6:5008768-5011744(+) (11)	NA	Q39172	Probable NADP-dependent oxidoreductase P1	AT3G03080.1	Zinc-binding dehydrogenase family protein 	LOC_Os06g40070.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206167.1.S1_at	A	A1TS	POPTR_0006s06950	POPTR_0006s06950 (11)	scaffold_6:5013852-5014366(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206168.1.S1_at	A	A1TS	POPTR_0006s06980	POPTR_0006s06980 (11)	scaffold_6:5024963-5028324(-) (11)	NA	O58107	Probable galactokinase	AT3G10700.1	galacturonic acid kinase 	LOC_Os04g51880.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr4g160950.1	Mevalonate and galactokinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.206169.1.S1_at	A	A1TS	POPTR_0006s07040	POPTR_0006s07040 (11)	scaffold_6:5073465-5074022(-) (11)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os02g41930.1	OsFBX57 - F-box domain containing protein	Medtr4g024320.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20617.1.S1_at	A	A1TS	POPTR_0001s38960	POPTR_0001s38960 (11)	scaffold_1:38215579-38216432(-) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT1G78520.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os01g14140.1	"X8 domain containing protein, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206170.1.S1_at	A	A1TS	POPTR_0006s07070	POPTR_0006s07070 (11)	scaffold_6:5090609-5091298(+) (11)	NA	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	AT1G56140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os04g56360.1	"cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed"	Medtr8g130230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206171.1.S1_at	A	A1TS	POPTR_0006s07080	POPTR_0006s07080 (11)	scaffold_6:5093924-5094242(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206172.1.S1_at	A	A1TS	POPTR_0006s07100	POPTR_0006s07100 (11)	scaffold_6:5103951-5105044(-) (11)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr2g071640.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.206174.1.S1_at	A	A1TS	POPTR_0006s07140	POPTR_0006s07140 (11)	scaffold_6:5128945-5130131(+) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206175.1.S1_at	A	A1TS	POPTR_0006s07210	POPTR_0006s07210 (11)	scaffold_6:5171521-5172143(-) (11)	NA	Q921G6	Leucine-rich repeat and calponin homology domain-containing protein 4	AT2G19330.1	plant intracellular ras group-related LRR 6 	LOC_Os04g51580.2	"leucine rich repeat containing protein, expressed"	Medtr8g130010.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.206176.1.S1_at	A	A1TS	POPTR_0006s07230	POPTR_0006s07230 (11)	scaffold_6:5181991-5183457(+) (11)	NA	Q9SZR0	"Choline monooxygenase, chloroplastic"	AT4G29890.1	"choline monooxygenase, putative (CMO-like) "	LOC_Os06g48510.1	"choline monooxygenase, chloroplast precursor, putative, expressed"	Medtr8g130000.1	"Bacterial ring hydroxylating dioxygenase, alpha subunit "	GO:0055114|oxidation reduction	"GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity"	NA
PtpAffx.206177.1.S1_at	A	A1TS	POPTR_0006s07240	POPTR_0006s07240 (11)	scaffold_6:5185141-5185342(-) (11)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.206178.1.S1_at	A	A1TS	POPTR_0006s07240	POPTR_0006s07240 (10)	scaffold_6:5194962-5196987(-) (10)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.206180.1.S1_at	A	A1TS	POPTR_0006s07260	POPTR_0006s07260 (10)	scaffold_6:5232192-5233327(+) (10)	NA	Q42191	Mitochondrial inner membrane protein OXA1	AT5G62050.1	homolog of yeast oxidase assembly 1 (OXA1) 	LOC_Os10g37690.1	"inner membrane protein, putative, expressed"	AC233677_14.1	60 kDa inner membrane insertion protein AC233677.2 80748-73714 E EGN_Mt090430 200	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.206181.1.S1_at	A	A1TS	POPTR_0006s07330	POPTR_0006s07330 (11)	scaffold_6:5268922-5270014(+) (11)	NA	Q54GS1	Protein CLEC16A homolog	AT3G28430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155); Has 243 Blast hits to 233 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 	LOC_Os04g23210.1	expressed protein	Medtr8g129920.1	"Protein CLEC16A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206182.1.S1_s_at	A	A1TS	POPTR_0018s13770	POPTR_0018s13770 (11)	scaffold_18:14027418-14027788(-) (11)	NA	NA	NA	AT5G57130.1	Clp amino terminal domain-containing protein 	LOC_Os04g23220.1	expressed protein	Medtr2g042940.1	"Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206183.1.S1_at	A	A1TS	POPTR_0006s07370	POPTR_0006s07370 (11)	scaffold_6:5309406-5310062(-) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.206184.1.S1_at	A	A1TS	POPTR_0006s07410	POPTR_0006s07410 (11)	scaffold_6:5338509-5340008(-) (11)	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23550.1	"basic helix-loop-helix family protein, putative, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.206185.1.S1_at	A	A1TS	POPTR_0006s07430	POPTR_0006s07430 (11)	scaffold_6:5371298-5371623(+) (11)	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23440.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.206186.1.S1_s_at	A	A1TS	POPTR_0006s07430	POPTR_0006s07430 (11)	scaffold_6:5363181-5371747(+) (11)	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23440.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.206187.1.S1_at	A	A1TS	POPTR_0006s07490	POPTR_0006s07490 (11)	scaffold_6:5421517-5423404(+) (11)	NA	Q9LU68	Protein CHLOROPLAST IMPORT APPARATUS 2	AT5G57180.2	chloroplast import apparatus 2 	LOC_Os02g05470.1	"CCT motif family protein, expressed"	Medtr8g129690.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206188.1.S1_at	A	A1TS	POPTR_0006s07500	POPTR_0006s07500 (11)	scaffold_6:5427950-5431591(+) (11)	NA	Q5E9J7	tRNA-specific adenosine deaminase 2	AT1G48175.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os03g20570.1	"tRNA-specific adenosine deaminase 2, putative, expressed"	Medtr7g103640.1	"CMP/dCMP deaminase, zinc-binding "	NA	GO:0016787|hydrolase activity||GO:0008270|zinc ion binding	NA
PtpAffx.206189.1.S1_at	A	A1TS	POPTR_0006s07510	POPTR_0006s07510 (9)	scaffold_6:5443914-5444467(+) (11)	NA	NA	NA	AT2G19260.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g34720.2	"PHD-finger domain containing protein, putative, expressed"	Medtr3g149370.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206190.1.S1_at	A	A1TS	POPTR_0006s07520	POPTR_0006s07520 (11)	scaffold_6:5449167-5450405(-) (11)	NA	P48785	Pathogenesis-related homeodomain protein	AT4G29940.1	pathogenesis related homeodomain protein  A 	LOC_Os02g05450.1	"Homeobox domain containing protein, expressed"	Medtr2g042720.1	"Homeobox; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.206191.1.S1_at	A	A1TS	POPTR_0006s07540	POPTR_0006s07540 (9)	scaffold_6:5468327-5469203(+) (9)	NA	Q9LVD8	Putative clathrin assembly protein At5g57200	AT5G57200.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr2g042690.1	"Carbamoyl-phosphate synthase L chain, ATP-binding; ENTH/VHS; ANTH; "	NA	GO:0005543|phospholipid binding	NA
PtpAffx.206191.1.S1_x_at	A	A1TS	POPTR_0006s07540	POPTR_0006s07540 (9)	scaffold_6:5468328-5469203(+) (9)	NA	Q9LVD8	Putative clathrin assembly protein At5g57200	AT5G57200.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr2g042690.1	"Carbamoyl-phosphate synthase L chain, ATP-binding; ENTH/VHS; ANTH; "	NA	GO:0005543|phospholipid binding	NA
PtpAffx.206192.1.S1_at	A	A1TS	POPTR_0006s07570	POPTR_0006s07570 (11)	scaffold_6:5490338-5490776(-) (11)	NA	Q9SMZ2	Pentatricopeptide repeat-containing protein At4g33170	AT4G33170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g36620.1	"pentatricopeptide, putative, expressed"	Medtr7g015730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206193.1.S1_at	A	A1TS	POPTR_0006s07630	POPTR_0006s07630 (11)	scaffold_6:5549906-5550529(-) (11)	NA	NA	NA	AT4G31340.1	myosin heavy chain-related 	LOC_Os09g32250.2	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206193.1.S1_s_at	A	A1TS	POPTR_0006s07630	POPTR_0006s07630 (11)	scaffold_6:5549880-5551433(-) (11)	NA	NA	NA	AT4G31340.1	myosin heavy chain-related 	LOC_Os09g32250.2	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206195.1.S1_at	A	A1TS	POPTR_0006s07640	POPTR_0006s07640 (11)	scaffold_6:5554377-5555698(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206196.1.S1_at	A	A1TS	POPTR_0006s07660	POPTR_0006s07660 (11)	scaffold_6:5610928-5611496(+) (11)	NA	NA	NA	AT2G19090.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os08g40830.2	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr8g129490.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206197.1.S1_at	A	A1TS	POPTR_0006s07670	POPTR_0006s07670 (10)	scaffold_6:5612760-5614136(-) (10)	NA	NA	NA	AT2G19080.1	metaxin-related 	LOC_Os06g07160.1	expressed protein	Medtr8g129480.1	"glutathione S-transferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206198.1.S1_at	A	A1TS	POPTR_0006s07690	POPTR_0006s07690 (9)	scaffold_6:5621170-5621696(-) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78340.1	glutathione S-transferase TAU 22 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206200.1.S1_at	A	A1MS	POPTR_0006s07800	POPTR_0006s07800 (10)	scaffold_6:5713236-5713653(+) (10)	NA	Q9M2A1	Pentatricopeptide repeat-containing protein At3g42630	AT3G42630.1	Pentatricopeptide repeat (PPR) superfamily protein 	NA	NA	Medtr5g076940.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206201.1.S1_at	A	A1TS	POPTR_0006s07810	POPTR_0006s07810 (11)	scaffold_6:5714579-5715032(-) (11)	NA	Q9FKG5	U-box domain-containing protein 51	AT5G12000.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os02g54590.1	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206203.1.S1_at	A	A1TS	POPTR_0006s07820	POPTR_0006s07820 (11)	scaffold_6:5724392-5724740(-) (11)	NA	C0LGU0	Probable LRR receptor-like serine/threonine-protein kinase RLK	AT5G35390.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g45240.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr4g161170.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.206204.1.S1_at	A	A1TS	POPTR_0006s07830	POPTR_0006s07830 (11)	scaffold_6:5730701-5731265(-) (11)	NA	NA	NA	AT3G10572.1	"3-phosphoinositide-dependent protein kinase-1, putative "	LOC_Os06g48970.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206205.1.S1_at	A	A1TS	POPTR_0006s07860	POPTR_0006s07860 (11)	scaffold_6:5747356-5747475(+) (11)	NA	Q9SCN8	Cell division control protein 48 homolog D	AT3G53230.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.206205.1.S1_x_at	A	A1TS	POPTR_0006s07860	POPTR_0006s07860 (11)	scaffold_6:5747356-5747492(+) (11)	NA	Q9SCN8	Cell division control protein 48 homolog D	AT3G53230.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.206206.1.S1_at	A	A1TS	POPTR_0006s07860	POPTR_0006s07860 (9)	scaffold_6:5747659-5747962(+) (11)	NA	Q9SCN8	Cell division control protein 48 homolog D	AT3G53230.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.206207.1.S1_at	A	A1TS	POPTR_0006s07920	POPTR_0006s07920 (11)	scaffold_6:5786769-5787395(+) (11)	NA	NA	NA	AT5G37860.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g56570.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g020880.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.206208.1.S1_at	A	A1TS	POPTR_0006s07930	POPTR_0006s07930 (11)	scaffold_6:5796477-5796958(+) (11)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT2G07170.1	ARM repeat superfamily protein 	LOC_Os09g38710.2	"HEAT repeat family protein, putative, expressed"	Medtr3g067150.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206209.1.S1_at	A	A1TS	POPTR_0006s07940	POPTR_0006s07940 (11)	scaffold_6:5800440-5800904(-) (11)	NA	Q9FM85	Probable receptor-like protein kinase At5g56460	AT2G07180.2	Protein kinase superfamily protein 	LOC_Os06g45280.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g081040.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206210.1.S1_at	A	A1TS	POPTR_0006s07960	POPTR_0006s07960 (11)	scaffold_6:5815888-5817976(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g24170.2	"RNA recognition motif containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206211.1.S1_at	A	A1TS	POPTR_0006s07970	POPTR_0006s07970 (11)	scaffold_6:5823334-5823479(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT5G58190.2	evolutionarily conserved C-terminal region 10 	LOC_Os08g44200.1	"ECT5, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206211.1.S1_x_at	A	A1TS	POPTR_0006s07970	POPTR_0006s07970 (11)	scaffold_6:5823334-5825377(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT5G58190.2	evolutionarily conserved C-terminal region 10 	LOC_Os08g44200.1	"ECT5, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206213.1.S1_at	A	A1TS	POPTR_0006s07980	POPTR_0006s07980 (11)	scaffold_6:5838922-5839476(-) (11)	NA	A6MVV9	Chloroplast envelope membrane protein	AT4G31040.1	CemA-like proton extrusion protein-related 	LOC_Os08g12780.4	"chloroplast envelope membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.206213.1.S1_x_at	A	A1TS	POPTR_0006s07980	POPTR_0006s07980 (11)	scaffold_6:5838922-5839549(-) (11)	NA	A6MVV9	Chloroplast envelope membrane protein	AT4G31040.1	CemA-like proton extrusion protein-related 	LOC_Os08g12780.4	"chloroplast envelope membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.206215.1.S1_at	A	A1TS	POPTR_0006s08020	POPTR_0006s08020 (11)	scaffold_6:5853880-5854321(-) (11)	NA	O64629	Serine/threonine-protein kinase Aurora-3	AT2G45490.1	ataurora3 	LOC_Os03g55620.3	"CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g043740.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206216.1.S1_at	A	A1MS	POPTR_0006s08090	POPTR_0006s08090 (10)	scaffold_6:5890743-5891258(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206217.1.S1_at	A	A1MS	POPTR_0006s08100	POPTR_0006s08100 (11)	scaffold_6:5893342-5893559(+) (11)	NA	Q9FWS3	Zinc finger CCCH domain-containing protein 16	AT1G75340.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os06g49080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr4g107870.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.206217.1.S1_s_at	A	A1TS	POPTR_0006s08100	POPTR_0006s08100 (11)	scaffold_6:5891893-5893328(+) (11)	NA	Q9FWS3	Zinc finger CCCH domain-containing protein 16	AT1G75340.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os06g49080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr4g107870.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.206219.1.S1_s_at	A	A1TS	POPTR_0006s08120	POPTR_0006s08120 (11)	scaffold_6:5912079-5912246(+) (11)	NA	Q9T091	Vacuolar protein sorting-associated protein 26	AT4G27690.1	vacuolar protein sorting 26B 	LOC_Os12g31640.1	"vacuolar protein sorting-associated protein 26, putative, expressed"	NA	NA	GO:0007034|vacuolar transport	NA	GO:0030904|retromer complex
PtpAffx.206220.1.S1_at	A	A1TS	POPTR_0006s08150	POPTR_0006s08150 (11)	scaffold_6:5919601-5920111(-) (11)	NA	Q0JAA0	Probable protein phosphatase 2C 44	AT4G28400.1	Protein phosphatase 2C family protein 	LOC_Os04g52000.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206220.1.S1_x_at	A	A1TS	POPTR_0006s08150	POPTR_0006s08150 (11)	scaffold_6:5919491-5920111(-) (11)	NA	Q0JAA0	Probable protein phosphatase 2C 44	AT4G28400.1	Protein phosphatase 2C family protein 	LOC_Os04g52000.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206221.1.S1_at	A	A1TS	POPTR_0006s08160	POPTR_0006s08160 (11)	scaffold_6:5930744-5931049(-) (11)	NA	Q9S9X4	Putative F-box/LRR-repeat protein 8	AT4G07400.1	VIER F-box proteine 3 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206222.1.S1_at	A	A1TS	POPTR_0006s08180	POPTR_0006s08180 (11)	scaffold_6:5942384-5942755(-) (11)	NA	NA	NA	AT5G24710.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g46510.1	"peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed"	Medtr7g134460.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206223.1.S1_at	A	A1TS	POPTR_0006s08190	POPTR_0006s08190 (9)	scaffold_6:5959892-5960049(+) (9)	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr7g118180.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206224.1.S1_at	A	A1TS	POPTR_0006s08200	POPTR_0006s08200 (9)	scaffold_6:5964191-5964667(+) (9)	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr7g118180.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206225.1.S1_at	A	A1TS	POPTR_0006s08270	POPTR_0006s08270 (11)	scaffold_6:6007163-6008189(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT2G37460.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr7g118460.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.206226.1.S1_at	A	A1TS	POPTR_0006s08280	POPTR_0006s08280 (11)	scaffold_6:6014175-6014696(-) (11)	NA	NA	NA	AT5G13660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 135 Blast hits to 126 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g025140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206227.1.S1_at	A	A1TS	POPTR_0006s08290	POPTR_0006s08290 (11)	scaffold_6:6018411-6019166(-) (11)	NA	O23826	125 kDa kinesin-related protein	AT2G37420.1	ATP binding microtubule motor family protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.206228.1.S1_at	A	A1TS	POPTR_0006s08300	POPTR_0006s08300 (11)	scaffold_6:6033733-6035096(+) (11)	NA	Q9SJN0	Protein ABSCISIC ACID-INSENSITIVE 5	AT2G36270.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g64000.1	"bZIP transcription factor, putative, expressed"	Medtr7g127260.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.206229.1.S1_at	A	A1TS	POPTR_0006s08320	POPTR_0006s08320 (11)	scaffold_6:6059088-6059313(+) (11)	NA	NA	NA	AT3G52770.1	protein binding 	LOC_Os04g33560.1	expressed protein	Medtr7g127200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206230.1.S1_at	A	A1TS	POPTR_0006s08340	POPTR_0006s08340 (11)	scaffold_6:6066313-6068961(-) (11)	NA	Q8GW19	CAAX prenyl protease 2	AT2G36305.1	farnesylated protein-converting enzyme 2 	LOC_Os05g28950.1	"CAAX amino terminal protease family protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.206231.1.S1_at	A	A1TS	POPTR_0006s08360	POPTR_0006s08360 (11)	scaffold_6:6089829-6094905(+) (11)	NA	Q91858	Transcription initiation factor TFIID subunit 12	AT3G10070.1	TBP-associated factor 12 	LOC_Os01g63940.1	"Transcription initiation factor TFIID subunit A containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0043565|sequence-specific DNA binding||GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
PtpAffx.206232.1.S1_at	A	A1TS	POPTR_0006s08390	POPTR_0006s08390 (11)	scaffold_6:6115553-6115828(+) (11)	NA	Q94AA1	UNC93-like protein	AT3G09470.2	Major facilitator superfamily protein 	LOC_Os12g37939.1	"unc-93 homolog A, putative, expressed"	Medtr7g118350.1	"Protein of unknown function DUF895, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206234.1.S1_at	A	A1TS	POPTR_0006s08440	POPTR_0006s08440 (10)	scaffold_6:6145532-6146025(+) (10)	NA	Q9LZ56	Dof zinc finger protein DOF5.1	AT5G02460.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os03g60630.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.206235.1.S1_at	A	A1TS	POPTR_0006s08460	POPTR_0006s08460 (11)	scaffold_6:6169507-6169828(-) (11)	NA	NA	NA	AT5G02440.1	unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g62360.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206236.1.S1_at	A	A1TS	POPTR_0006s08470	POPTR_0006s08470 (11)	scaffold_6:6174091-6174770(-) (11)	NA	NA	NA	AT3G09430.1	unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g49510.1	expressed protein	Medtr7g067520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206237.1.S1_at	A	A1TS	POPTR_0006s08480	POPTR_0006s08480 (11)	scaffold_6:6177689-6178268(-) (11)	NA	Q9XSC3	WD repeat-containing protein 44	AT2G37670.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os11g08400.1	expressed protein	Medtr7g067570.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206238.1.S1_at	A	A1MS	POPTR_0006s08510	POPTR_0006s08510 (9)	scaffold_6:6196270-6198109(+) (9)	NA	NA	NA	AT3G09410.1	Pectinacetylesterase family protein 	LOC_Os05g02120.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134700.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206239.1.S1_at	A	A1TS	POPTR_0006s08520	POPTR_0006s08520 (11)	scaffold_6:6202226-6202875(-) (11)	NA	Q9LQN6	Probable protein phosphatase 2C 4	AT1G07630.1	pol-like 5 	LOC_Os03g60650.1	"protein phosphatase 2C, putative, expressed"	Medtr7g067970.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206241.1.S1_at	A	A1TS	POPTR_0006s08540	POPTR_0006s08540 (11)	scaffold_6:6217761-6219251(-) (11)	NA	Q6P3R1	Kinesin-like protein KIF22	AT5G02370.1	ATP binding microtubule motor family protein 	LOC_Os05g38480.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g068180.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.206242.1.S1_at	A	A1TS	POPTR_0006s08560	POPTR_0006s08560 (10)	scaffold_6:6232861-6233615(-) (10)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33480.1	"cytochrome P450 domain containing protein, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.206243.1.S1_at	A	A1MS	POPTR_0006s08580	POPTR_0006s08580 (9)	scaffold_6:6267130-6267962(-) (9)	NA	O13731	E3 ubiquitin-protein ligase ubr11	AT5G02310.1	proteolysis 6 	LOC_Os01g05500.2	"zinc finger protein, putative, expressed"	Medtr7g068520.1	"Zinc finger, RING-type; Zinc finger, N-recognin; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206243.1.S1_s_at	A	A1TS	POPTR_0006s08580	POPTR_0006s08580 (9)	scaffold_6:6266897-6267886(-) (11)	NA	O13731	E3 ubiquitin-protein ligase ubr11	AT5G02310.1	proteolysis 6 	LOC_Os01g05500.2	"zinc finger protein, putative, expressed"	Medtr7g068520.1	"Zinc finger, RING-type; Zinc finger, N-recognin; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206244.1.S1_at	A	A1TS	POPTR_0006s08600	POPTR_0006s08600 (11)	scaffold_6:6285708-6286357(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206245.1.S1_at	A	A1TS	POPTR_0006s08640	POPTR_0006s08640 (11)	scaffold_6:6330220-6331260(-) (11)	NA	P73177	Uncharacterized ribonuclease sll1290	AT5G02250.1	Ribonuclease II/R family protein 	LOC_Os01g62440.1	"ribonuclease protein, putative, expressed"	Medtr8g087680.1	"Ribonuclease II; Nucleotide binding protein, PINc "	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.206246.1.S1_at	A	A1TS	POPTR_0006s08680	POPTR_0006s08680 (10)	scaffold_6:6361509-6362725(+) (10)	NA	Q6R0E3	Telomere repeat-binding protein 5	AT1G07540.1	TRF-like 2 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr2g116750.1	Ubiquitin; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206247.1.S1_at	A	A1TS	POPTR_0006s08690	POPTR_0006s08690 (11)	scaffold_6:6370879-6371381(+) (11)	NA	O80933	Scarecrow-like protein 9	AT2G37650.1	GRAS family transcription factor 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206248.1.S1_at	A	A1TS	POPTR_0006s08730	POPTR_0006s08730 (11)	scaffold_6:6418081-6418856(-) (11)	NA	Q9FHR7	Probable WRKY transcription factor 49	AT5G43290.1	WRKY DNA-binding protein 49 	LOC_Os01g74140.1	"OsWRKY17 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g046700.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.206248.1.S1_x_at	A	A1TS	POPTR_0006s08730	POPTR_0006s08730 (11)	scaffold_6:6418031-6418874(-) (11)	NA	Q9FHR7	Probable WRKY transcription factor 49	AT5G43290.1	WRKY DNA-binding protein 49 	LOC_Os01g74140.1	"OsWRKY17 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g046700.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.206249.1.S1_at	A	A1TS	POPTR_0006s08770	POPTR_0006s08770 (11)	scaffold_6:6454581-6455320(-) (11)	NA	Q93VV0	Probable S-acyltransferase At3g09320	AT3G09320.1	DHHC-type zinc finger family protein 	LOC_Os01g62620.1	"DHHC zinc finger domain containing protein, expressed"	Medtr1g120410.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.206251.1.S1_s_at	A	A2TS	POPTR_0006s08790	POPTR_0006s08790 (11)//POPTR_2222s00200 (11)	scaffold_2222:428-773(+) (11)//scaffold_6:6471782-6472127(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT5G02190.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g62630.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g087300.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206252.1.S1_s_at	A	A1TS	POPTR_2222s00200	POPTR_2222s00200 (11)	scaffold_2222:1012-1437(+) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G02190.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g62630.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g087300.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206254.1.S1_at	A	A1TS	POPTR_0006s08860	POPTR_0006s08860 (11)	scaffold_6:6512550-6513228(-) (11)	NA	Q9LZM0	Putative cyclin-D7-1	AT5G02110.1	CYCLIN D7;1 	LOC_Os07g42860.1	"cyclin, putative, expressed"	Medtr8g073680.1	Cyclin-like; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206255.1.S1_at	A	A1TS	POPTR_0006s08870	POPTR_0006s08870 (11)	scaffold_6:6518444-6518479(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT2G37710.1	receptor lectin kinase 	LOC_Os04g44900.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206255.1.S1_x_at	A	A1TS	POPTR_0006s08870	POPTR_0006s08870 (9)	scaffold_6:6518234-6518799(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT2G37710.1	receptor lectin kinase 	LOC_Os04g44900.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206256.1.S1_s_at	A	A4TS	POPTR_0006s08880	POPTR_1896s00200 (11)//POPTR_0006s08920 (11)//POPTR_0006s08950 (11)//POPTR_0006s08880 (11)	scaffold_1896:846-1009(+) (11)//scaffold_6:6524472-6524635(+) (11)//scaffold_6:6590209-6590372(+) (11)//scaffold_6:6600835-6600998(+) (11)	NA	P16064	Subtilisin inhibitor 1	NA	NA	NA	NA	Medtr3g021790.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.206257.1.S1_s_at	A	A2TS	POPTR_0006s08970	POPTR_0006s08970 (11)//POPTR_0006s08890 (9)	scaffold_6:6530669-6531008(-) (9)//scaffold_6:6596942-6608002(-) (11)	POPTR_1896s00210 (8)//POPTR_0006s08900 (8)//POPTR_0006s08870 (8)//POPTR_0006s08960 (7)	Q9M020	Lectin-domain containing receptor kinase A4.2	AT2G37710.1	receptor lectin kinase 	LOC_Os04g44900.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206259.1.S1_at	A	A1TS	POPTR_0006s08990	POPTR_0006s08990 (11)	scaffold_6:6614129-6615930(-) (11)	NA	Q949Y3	Bifunctional purple acid phosphatase 26	AT5G34850.1	purple acid phosphatase 26 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20626.1.S1_at	A	A1TS	POPTR_0002s02240	POPTR_0002s02240 (11)	scaffold_2:1236048-1236537(-) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022060.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.20626.2.S1_a_at	A	A1TS	POPTR_0006s01810	POPTR_0006s01810 (9)	scaffold_6:1091186-1092116(+) (11)	NA	NA	NA	AT1G27330.1	Ribosome associated membrane protein RAMP4 	LOC_Os11g41875.2	"membrane protein, putative, expressed"	Medtr2g030550.1	Ribosome associated membrane RAMP4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206260.1.S1_at	A	A1TS	POPTR_0006s09000	POPTR_0006s09000 (11)	scaffold_6:6616420-6617307(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206261.1.S1_s_at	A	A1TS	POPTR_0006s09010	POPTR_0006s09010 (11)	scaffold_6:6634124-6635216(-) (11)	NA	NA	NA	AT2G37730.1	Protein of unknown function (DUF604) 	LOC_Os03g16334.1	"fringe-related protein, putative, expressed"	Medtr4g079780.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206262.1.S1_at	A	A1TS	POPTR_0006s09020	POPTR_0006s09020 (10)	scaffold_6:6644348-6644820(-) (10)	NA	Q38895	Transcriptional regulator SUPERMAN	AT3G53820.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os04g50070.1	ZOS4-13 - C2H2 zinc finger protein	Medtr4g084500.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.206263.1.S1_at	A	A1TS	POPTR_0006s09030	POPTR_0006s09030 (11)	scaffold_6:6658961-6659204(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206264.1.S1_at	A	A1TS	POPTR_0006s09040	POPTR_0006s09040 (11)	scaffold_6:6663808-6664746(-) (11)	NA	Q9LHS9	Probable transcriptional regulator RABBIT EARS	AT2G37740.1	zinc-finger protein 10 	LOC_Os05g20930.1	"ZOS5-07 - C2H2 zinc finger protein, expressed"	Medtr4g018860.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.206265.1.S1_at	A	A1TS	POPTR_0006s09070	POPTR_0006s09070 (11)	scaffold_6:6699622-6700178(+) (11)	NA	P50165	Tropinone reductase homolog	AT5G06060.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16210.1	"tropinone reductase, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.206266.1.S1_at	A	A1TS	POPTR_0006s09090	POPTR_0006s09090 (10)	scaffold_6:6709671-6710682(+) (11)	NA	NA	NA	AT3G53830.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os01g62810.4	"regulator of chromosome condensation, putative, expressed"	Medtr3g092040.2	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206268.1.S1_at	A	A1TS	POPTR_0006s09120	POPTR_0006s09120 (11)	scaffold_6:6742577-6743037(+) (11)	NA	Q9LZM4	Wall-associated receptor kinase-like 20	AT5G02070.1	Protein kinase family protein 	LOC_Os05g25390.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr3g092070.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206269.1.S1_at	A	A1TS	POPTR_0006s09120	POPTR_0006s09120 (11)	scaffold_6:6744000-6744489(+) (11)	NA	Q9LZM4	Wall-associated receptor kinase-like 20	AT5G02070.1	Protein kinase family protein 	LOC_Os05g25390.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr3g092070.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206270.1.S1_at	A	A1TS	POPTR_0006s09130	POPTR_0006s09130 (11)	scaffold_6:6752988-6753209(+) (11)	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os08g13930.2	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.206271.1.S1_at	A	A1TS	POPTR_0006s09140	POPTR_0006s09140 (11)	scaffold_6:6755956-6758418(-) (11)	NA	Q945M8	UPF0497 membrane protein At3g53850	AT3G53850.1	Uncharacterised protein family (UPF0497) 	LOC_Os09g07480.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g018930.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206273.1.S1_at	A	A1TS	POPTR_0006s09160	POPTR_0006s09160 (11)	scaffold_6:6769097-6769390(+) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os01g62870.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.206274.1.S1_at	A	A1TS	POPTR_0006s09180	POPTR_0006s09180 (11)	scaffold_6:6773310-6774149(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206275.1.S1_at	A	A1MS	POPTR_0006s09190	POPTR_0006s09190 (11)	scaffold_6:6777587-6778178(-) (11)	NA	Q9LUC2	Pentatricopeptide repeat-containing protein At3g14730	AT3G14730.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g60250.1	"pentatricopeptide, putative, expressed"	Medtr4g154400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206278.1.S1_at	A	A1TS	POPTR_0006s09270	POPTR_0006s09270 (11)	scaffold_6:6822101-6822578(+) (11)	NA	Q3E8X3	Probable peptide/nitrate transporter At5g28470	AT5G28470.1	Major facilitator superfamily protein 	LOC_Os01g68510.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113050.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.206279.1.S1_at	A	A1TS	POPTR_0006s09280	POPTR_0006s09280 (11)	scaffold_6:6824241-6824705(+) (11)	NA	NA	NA	AT2G37880.1	"Protein of unknown function, DUF617 "	LOC_Os02g47980.1	"DUF617 domain containing protein, expressed"	Medtr7g070580.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206280.1.S1_at	A	A1TS	POPTR_0006s09290	POPTR_0006s09290 (9)	scaffold_6:6826019-6826165(+) (11)	NA	O02414	"Dynein light chain LC6, flagellar outer arm"	AT1G52240.2	RHO guanyl-nucleotide exchange factor 11 	LOC_Os01g55510.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr6g099400.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.206281.1.S1_at	A	A1MS	POPTR_0006s09290	POPTR_0006s09290 (11)	scaffold_6:6827264-6827496(+) (11)	NA	O02414	"Dynein light chain LC6, flagellar outer arm"	AT1G52240.2	RHO guanyl-nucleotide exchange factor 11 	LOC_Os01g55510.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr6g099400.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.206281.1.S1_x_at	A	A1MS	POPTR_0006s09290	POPTR_0006s09290 (11)	scaffold_6:6827264-6827496(+) (11)	NA	O02414	"Dynein light chain LC6, flagellar outer arm"	AT1G52240.2	RHO guanyl-nucleotide exchange factor 11 	LOC_Os01g55510.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr6g099400.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.206282.1.S1_at	A	A1TS	POPTR_0006s09310	POPTR_0006s09310 (11)	scaffold_6:6835549-6835694(-) (11)	NA	P0CI03	Putative peptide/nitrate transporter At2g37900	AT2G37900.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.206283.1.S1_at	A	A1TS	POPTR_0006s09320	POPTR_0006s09320 (11)	scaffold_6:6853970-6854794(-) (11)	NA	O80792	Putative DEAD-box ATP-dependent RNA helicase 33	AT2G37920.1	copper ion transmembrane transporters 	LOC_Os02g35620.1	expressed protein	AC234023_1.1	hypothetical protein AC234023.1 47-1836 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206284.1.S1_at	A	A1TS	POPTR_0006s09330	POPTR_0006s09330 (11)	scaffold_6:6860512-6860940(+) (11)	NA	NA	NA	AT3G09280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206286.1.S1_at	A	A1MS	POPTR_0006s09360	POPTR_0006s09360 (11)	scaffold_6:6881238-6881460(-) (11)	NA	NA	NA	AT3G53980.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g62980.1	"LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070950.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206287.1.S1_at	A	A1TS	POPTR_0006s09420	POPTR_0006s09420 (11)	scaffold_6:6940735-6942554(+) (11)	NA	Q7DMA9	Peptidyl-prolyl isomerase PASTICCINO1	AT3G54010.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os03g25140.1	"peptidyl-prolyl isomerase PASTICCINO1, putative, expressed"	Medtr4g073480.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206288.1.S1_s_at	A	A1TS	POPTR_0006s09450	POPTR_0006s09450 (11)	scaffold_6:6948074-6948488(-) (11)	NA	P27880	18.2 kDa class I heat shock protein	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206289.1.S1_at	A	A1TS	POPTR_0006s09470	POPTR_0006s09470 (10)	scaffold_6:6956994-6957546(+) (10)	NA	NA	NA	AT5G01030.2	Protein of unknown function (DUF3527) 	LOC_Os03g16070.3	expressed protein	Medtr2g117390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206290.1.S1_at	A	A1TS	POPTR_0006s09510	POPTR_0006s09510 (11)	scaffold_6:6987193-6987656(-) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os05g37900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206290.1.S1_s_at	A	A1TS	POPTR_0006s09510	POPTR_0006s09510 (11)	scaffold_6:6987236-6987709(-) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os05g37900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206291.1.S1_at	A	A1TS	POPTR_0006s09530	POPTR_0006s09530 (11)	scaffold_6:7015397-7015977(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206292.1.S1_at	A	A1MS	POPTR_0006s09560	POPTR_0006s09560 (10)	scaffold_6:7031785-7032585(+) (10)	NA	P46275	"Fructose-1,6-bisphosphatase, chloroplastic"	AT3G54050.2	high cyclic electron flow 1 	LOC_Os03g16050.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr4g121210.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206293.1.S1_at	A	A1TS	POPTR_0006s09570	POPTR_0006s09570 (11)	scaffold_6:7033462-7033643(-) (11)	NA	NA	NA	AT2G37960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g01008.1	expressed protein	Medtr4g015560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206293.1.S1_s_at	A	A1TS	POPTR_0006s09570	POPTR_0006s09570 (11)	scaffold_6:7033779-7034014(-) (11)	NA	NA	NA	AT2G37960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g01008.1	expressed protein	Medtr4g015560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206294.1.S1_at	A	A1TS	POPTR_0006s09580	POPTR_0006s09580 (11)	scaffold_6:7039827-7040302(-) (11)	NA	P37122	Cytochrome P450 76A2	AT3G52970.1	"cytochrome P450, family 76, subfamily G, polypeptide 1 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr1g147240.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.206297.1.S1_s_at	A	A2TS	POPTR_0006s09630	POPTR_0006s09630 (11)//POPTR_0006s09620 (10)	scaffold_6:7065162-7073856(-) (11)//scaffold_6:7073534-7074404(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206298.1.S1_at	A	A1TS	POPTR_0006s09640	POPTR_0006s09640 (11)	scaffold_6:7077471-7078047(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G54100.1	O-fucosyltransferase family protein 	LOC_Os05g37880.1	"growth regulator related protein, putative, expressed"	Medtr4g015740.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206300.1.S1_s_at	A	A1TS	POPTR_0006s09700	POPTR_0006s09700 (11)	scaffold_6:7120908-7121105(+) (11)	NA	Q9LD43	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic"	AT2G38040.2	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206301.1.S1_at	A	A1TS	POPTR_0006s09710	POPTR_0006s09710 (11)	scaffold_6:7126620-7127467(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g35390.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206302.1.S1_at	A	A1TS	POPTR_0006s09770	POPTR_0006s09770 (11)	scaffold_6:7182797-7183722(+) (11)	NA	Q6DFF9	Mitogen-activated protein kinase-binding protein 1	AT3G09080.1	Transducin/WD40 repeat-like superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206303.1.S1_at	A	A1TS	POPTR_0006s09850	POPTR_0006s09850 (11)	scaffold_6:7242005-7242983(+) (11)	NA	Q9FJD6	Putative respiratory burst oxidase homolog protein H	AT5G60010.1	ferric reductase-like transmembrane component family protein 	LOC_Os05g38980.1	"respiratory burst oxidase, putative, expressed"	Medtr7g067680.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.206306.1.S1_at	A	A1TS	POPTR_0006s09945	POPTR_0006s09945 (11)	scaffold_6:7401583-7401871(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206307.1.S1_at	A	A1TS	POPTR_0006s09950	POPTR_0006s09950 (11)	scaffold_6:7402205-7403052(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206308.1.S1_at	A	A1TS	POPTR_0006s09960	POPTR_0006s09960 (11)	scaffold_6:7408891-7409420(-) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT1G74720.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os01g40480.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr8g112880.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206309.1.S1_at	A	A1TS	POPTR_0006s09970	POPTR_0006s09970 (11)	scaffold_6:7417558-7418747(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g024720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206310.1.S1_at	A	A1MS	POPTR_0006s09990	POPTR_0006s09990 (9)	scaffold_6:7425174-7426280(+) (10)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g07240.1	"serine/threonine-protein kinase BRI1-like 2 precursor, putative"	Medtr3g024750.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.206311.1.S1_at	A	A1TS	POPTR_0006s10030	POPTR_0006s10030 (11)	scaffold_6:7448177-7450662(-) (11)	NA	Q5YDB5	RNA polymerase II C-terminal domain phosphatase-like 2	AT5G01270.2	carboxyl-terminal domain (ctd) phosphatase-like 2 	LOC_Os02g42600.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g024780.1	NLI interacting factor 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.206312.1.S1_at	A	A1TS	POPTR_0006s10060	POPTR_0006s10060 (11)	scaffold_6:7472014-7472512(-) (11)	NA	Q499P8	UPF0420 protein C16orf58 homolog	AT5G01510.1	"Protein of unknown function, DUF647 "	LOC_Os01g04860.1	"DUF647 domain containing protein, putative, expressed"	Medtr3g025510.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206313.1.S1_at	A	A1TS	POPTR_0006s10090	POPTR_0006s10090 (11)	scaffold_6:7503039-7503304(-) (11)	NA	NA	NA	AT5G01470.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g61140.1	expressed protein	Medtr4g008870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206315.1.S1_at	A	A1TS	POPTR_0006s10160	POPTR_0006s10160 (11)	scaffold_6:7540961-7541416(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206316.1.S1_at	A	A1TS	POPTR_0006s10170	POPTR_0006s10170 (11)	scaffold_6:7541797-7542166(-) (11)	NA	Q54GB2	CTD small phosphatase-like protein 2	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206317.1.S1_at	A	A1TS	POPTR_0006s10190	POPTR_0006s10190 (11)	scaffold_6:7551580-7551795(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os06g40710.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g104840.1	"Peptidase M22, glycoprotease; Homeodomain-related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206318.1.S1_at	A	A1TS	POPTR_0006s10240	POPTR_0006s10240 (11)	scaffold_6:7645755-7646110(+) (11)	NA	Q9SDW0	Trihelix transcription factor GT-3a	AT5G01380.1	Homeodomain-like superfamily protein 	LOC_Os04g51320.1	"transcription factor TF2, putative, expressed"	Medtr5g026680.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206318.1.S1_x_at	A	A1TS	POPTR_0006s10240	POPTR_0006s10240 (11)	scaffold_6:7645755-7646233(+) (11)	NA	Q9SDW0	Trihelix transcription factor GT-3a	AT5G01380.1	Homeodomain-like superfamily protein 	LOC_Os04g51320.1	"transcription factor TF2, putative, expressed"	Medtr5g026680.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206319.1.S1_at	A	A1TS	POPTR_0006s10250	POPTR_0006s10250 (10)	scaffold_6:7663516-7664028(-) (10)	NA	P48620	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.206320.1.S1_at	A	A1TS	POPTR_0006s10260	POPTR_0006s10260 (11)	scaffold_6:7672611-7672663(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206320.1.S1_x_at	A	A1TS	POPTR_0006s10260	POPTR_0006s10260 (11)	scaffold_6:7672611-7673280(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206321.1.S1_at	A	A1TS	POPTR_0006s10260	POPTR_0006s10260 (11)	scaffold_6:7673428-7673943(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206322.1.S1_at	A	A1TS	POPTR_0006s10290	POPTR_0006s10290 (11)	scaffold_6:7692033-7692624(-) (11)	NA	O80452	AMP deaminase	AT2G38280.2	"AMP deaminase, putative / myoadenylate deaminase, putative "	LOC_Os07g49270.2	"AMP deaminase, putative, expressed"	AC233100_67.1	AMP deaminase AC233100.6 286316-296871 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
PtpAffx.206323.1.S1_at	A	A1TS	POPTR_0006s10350	POPTR_0006s10350 (11)	scaffold_6:7750995-7751404(-) (11)	NA	Q9M041	Transcription factor bHLH140	AT5G01310.1	APRATAXIN-like 	LOC_Os01g61480.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g075730.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.206324.1.S1_at	A	A1TS	POPTR_0006s10360	POPTR_0006s10360 (11)	scaffold_6:7768284-7768631(+) (11)	NA	Q9LFG2	"Diaminopimelate epimerase, chloroplastic"	AT3G53580.1	diaminopimelate epimerase family protein 	LOC_Os12g37960.2	"diaminopimelate epimerase, chloroplast precursor, putative, expressed"	Medtr7g077770.1	Diaminopimelate epimerase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009089|lysine biosynthetic process via diaminopimelate	GO:0008837|diaminopimelate epimerase activity	GO:0005737|cytoplasm
PtpAffx.206325.1.S1_at	A	A1TS	POPTR_0006s10370	POPTR_0006s10370 (11)	scaffold_6:7770663-7771041(-) (11)	NA	Q9M6N7	Ammonium transporter 2	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr7g075790.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.206326.1.S1_at	A	A1TS	POPTR_0006s10390	POPTR_0006s10390 (11)	scaffold_6:7782162-7783532(+) (11)	NA	O17861	GILT-like protein F37H8.5	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os03g18454.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed"	Medtr4g012060.1	Gamma interferon inducible lysosomal thiol reductase GILT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206327.1.S1_at	A	A1TS	POPTR_0006s10410	POPTR_0006s10410 (11)	scaffold_6:7793316-7793862(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G01550.1	lectin receptor kinase a4.1 	LOC_Os10g38960.1	"lectin-like receptor kinase, putative"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206328.1.S1_at	A	A1TS	POPTR_0006s10440	POPTR_0006s10440 (10)	scaffold_6:7810997-7811348(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206329.1.S1_at	A	A1TS	POPTR_0006s10450	POPTR_0006s10450 (11)	scaffold_6:7814522-7815237(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206330.1.S1_at	A	A1TS	POPTR_0006s10510	POPTR_0006s10510 (10)	scaffold_6:7871356-7872013(-) (10)	NA	A2WL19	Dehydration-responsive element-binding protein 2A	AT2G40340.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g07120.2	"AP2 domain containing protein, expressed"	Medtr7g076360.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.206331.1.S1_x_at	A	A1TS	POPTR_0013s00910	POPTR_0013s00910 (10)	scaffold_13:460356-460600(+) (10)	NA	NA	NA	AT5G26800.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g19400.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206332.1.S1_at	A	A1TS	POPTR_0006s10520	POPTR_0006s10520 (11)	scaffold_6:7884830-7885243(-) (11)	NA	Q9SCT4	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2	AT3G51740.1	inflorescence meristem receptor-like kinase 2 	LOC_Os03g18630.1	"receptor-like kinase RHG1, putative, expressed"	Medtr4g011440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.206333.1.S1_at	A	A1TS	POPTR_0006s10560	POPTR_0006s10560 (11)	scaffold_6:7906294-7906596(-) (11)	NA	Q6T486	Probable E3 ubiquitin-protein ligase rbrA	AT5G60250.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os11g01240.1	IBR domain containing protein	Medtr4g080390.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.206334.1.S1_at	A	A1TS	POPTR_0006s10580	POPTR_0006s10580 (11)	scaffold_6:7917740-7918102(-) (11)	NA	Q6NKS1	Probable protein phosphatase 2C 65	AT5G01700.2	Protein phosphatase 2C family protein 	LOC_Os12g01770.1	"protein phosphatase 2c, putative, expressed"	Medtr7g076600.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206335.1.S1_at	A	A1MS	POPTR_0006s10590	POPTR_0006s10590 (11)	scaffold_6:7923652-7924072(-) (11)	NA	NA	NA	AT5G01710.1	methyltransferases 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206336.1.S1_at	A	A1TS	POPTR_0006s10595	POPTR_0006s10595 (11)	scaffold_6:7937187-7937495(+) (11)	NA	Q5W6M3	UPF0497 membrane protein Os05g0344400	AT2G38480.1	Uncharacterised protein family (UPF0497) 	LOC_Os05g27790.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g076970.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206337.1.S1_at	A	A1TS	POPTR_0006s10600	POPTR_0006s10600 (11)	scaffold_6:7938261-7938992(-) (11)	NA	Q8S8P5	Probable WRKY transcription factor 33	AT2G38470.1	WRKY DNA-binding protein 33 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g076980.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.206338.1.S1_at	A	A1TS	POPTR_0006s10640	POPTR_0006s10640 (11)	scaffold_6:7967664-7968208(-) (11)	NA	Q9SR82	Putative pentatricopeptide repeat-containing protein At3g08820	AT3G08820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g01836.1	"pentatricopeptide, putative, expressed"	Medtr2g110280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206339.1.S1_at	A	A1TS	POPTR_0006s10660	POPTR_0006s10660 (11)	scaffold_6:7997145-7997639(+) (11)	NA	P50160	Sex determination protein tasselseed-2	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g18740.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.20634.1.S1_a_at	A	A1TS	POPTR_0014s00975	POPTR_0014s00975 (11)	scaffold_14:939384-939536(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20634.2.S1_a_at	A	A1TS	POPTR_0014s00975	POPTR_0014s00975 (11)	scaffold_14:939384-939474(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20634.4.S1_a_at	A	A1TS	POPTR_0014s00975	POPTR_0014s00975 (11)	scaffold_14:867121-867170(+) (11)//scaffold_14:928217-938053(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206341.1.S1_at	A	A1TS	POPTR_0006s10690	POPTR_0006s10690 (11)	scaffold_6:8027858-8028405(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206342.1.S1_at	A	A1MS	POPTR_0006s10700	POPTR_0006s10700 (11)	scaffold_6:8038000-8038560(-) (11)	NA	Q8L6Y7	"Pentatricopeptide repeat-containing protein At2g38420, mitochondrial"	AT2G38420.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g40020.1	"PPR repeat containing protein, expressed"	Medtr7g077520.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206343.1.S1_at	A	A1TS	POPTR_0006s10720	POPTR_0006s10720 (11)	scaffold_6:8053630-8056143(-) (11)	NA	Q8K4Q0	Regulatory-associated protein of mTOR	AT3G08850.1	"HEAT repeat ;WD domain, G-beta repeat protein protein "	LOC_Os12g01922.1	"WD domain and HEAT domain containing protein, putative, expressed"	Medtr7g077750.1	WD40-like; Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206344.1.S1_at	A	A1TS	POPTR_0006s10760	POPTR_0006s10760 (11)	scaffold_6:8138396-8139371(+) (11)	NA	P22195	Cationic peroxidase 1	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os03g22020.1	"peroxidase precursor, putative, expressed"	Medtr5g082780.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.206345.1.S1_at	A	A1TS	POPTR_0006s10770	POPTR_0006s10770 (11)	scaffold_6:8148591-8149808(+) (11)	NA	P46643	"Aspartate aminotransferase, mitochondrial"	AT2G30970.2	aspartate aminotransferase 1 	LOC_Os06g35540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.206346.1.S1_at	A	A1TS	POPTR_0006s10780	POPTR_0006s10780 (11)	scaffold_6:8151736-8152258(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g07240.1	expressed protein	Medtr5g091410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206347.1.S1_at	A	A1TS	POPTR_0006s10800	POPTR_0006s10800 (11)	scaffold_6:8164400-8165839(-) (11)	NA	NA	NA	AT3G51650.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51640.1); Has 27645 Blast hits to 15097 proteins in 1246 species: Archae - 44; Bacteria - 3367; Metazoa - 10036; Fungi - 2690; Plants - 1205; Viruses - 196; Other Eukaryotes - 10107 (source: NCBI BLink). 	LOC_Os11g02190.1	expressed protein	Medtr7g077900.1	"Zinc finger, Sec23/Sec24-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206348.1.S1_at	A	A1TS	POPTR_0006s10800	POPTR_0006s10800 (11)	scaffold_6:8167491-8167839(-) (11)	NA	NA	NA	AT3G51650.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51640.1); Has 27645 Blast hits to 15097 proteins in 1246 species: Archae - 44; Bacteria - 3367; Metazoa - 10036; Fungi - 2690; Plants - 1205; Viruses - 196; Other Eukaryotes - 10107 (source: NCBI BLink). 	LOC_Os11g02190.1	expressed protein	Medtr7g077900.1	"Zinc finger, Sec23/Sec24-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206348.1.S1_s_at	A	A1TS	POPTR_0006s10800	POPTR_0006s10800 (11)	scaffold_6:8167530-8167796(-) (11)	NA	NA	NA	AT3G51650.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51640.1); Has 27645 Blast hits to 15097 proteins in 1246 species: Archae - 44; Bacteria - 3367; Metazoa - 10036; Fungi - 2690; Plants - 1205; Viruses - 196; Other Eukaryotes - 10107 (source: NCBI BLink). 	LOC_Os11g02190.1	expressed protein	Medtr7g077900.1	"Zinc finger, Sec23/Sec24-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206349.1.S1_at	A	A1TS	POPTR_0006s10810	POPTR_0006s10810 (11)	scaffold_6:8186064-8186641(+) (11)	NA	Q9LZW3	U-box domain-containing protein 16	AT5G01830.1	ARM repeat superfamily protein 	LOC_Os05g39930.1	"spotted leaf 11, putative, expressed"	Medtr2g021720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.20635.1.A1_at	A	A1TS	POPTR_0001s10890	POPTR_0001s10890 (11)	scaffold_1:8442141-8443100(+) (11)	POPTR_0003s14190 (6)	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206350.1.S1_at	A	A1TS	POPTR_0006s10830	POPTR_0006s10830 (11)	scaffold_6:8214609-8216016(+) (11)	NA	NA	NA	AT2G38510.1	MATE efflux family protein 	LOC_Os10g37920.1	"MATE efflux family protein, putative, expressed"	Medtr5g076410.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206351.1.S1_at	A	A1TS	POPTR_0006s10850	POPTR_0006s10850 (11)	scaffold_6:8230366-8230995(-) (11)	NA	O22874	Expansin-A8	AT2G40610.1	expansin A8 	LOC_Os01g60770.1	"expansin precursor, putative, expressed"	Medtr5g083140.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206352.1.S1_at	A	A1MS	POPTR_0006s10870	POPTR_0006s10870 (11)	scaffold_6:8251054-8251637(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT3G08760.1	Protein kinase superfamily protein 	LOC_Os01g60700.1	"serine/threonine-protein kinase NAK, putative, expressed"	Medtr7g080340.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206353.1.S1_at	A	A1TS	POPTR_0006s10870	POPTR_0006s10870 (11)	scaffold_6:8253088-8253430(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT3G08760.1	Protein kinase superfamily protein 	LOC_Os01g60700.1	"serine/threonine-protein kinase NAK, putative, expressed"	Medtr7g080340.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206354.1.S1_at	A	A1TS	POPTR_0006s10900	POPTR_0006s10900 (10)	scaffold_6:8270297-8271030(+) (11)	NA	NA	NA	AT3G51580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). 	NA	NA	Medtr7g080400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206355.1.S1_at	A	A1TS	POPTR_0006s10940	POPTR_0006s10940 (11)	scaffold_6:8309571-8310403(-) (11)	NA	Q8BKU8	Transmembrane protein 87B	AT1G61670.1	Lung seven transmembrane receptor family protein 	LOC_Os03g21690.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr5g076540.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.206355.1.S1_x_at	A	A1TS	POPTR_0006s10940	POPTR_0006s10940 (11)	scaffold_6:8308123-8310403(-) (11)	NA	Q8BKU8	Transmembrane protein 87B	AT1G61670.1	Lung seven transmembrane receptor family protein 	LOC_Os03g21690.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr5g076540.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.206356.1.S1_at	A	A1TS	POPTR_0006s10970	POPTR_0006s10970 (11)	scaffold_6:8324804-8325356(-) (11)	NA	P98204	Phospholipid-transporting ATPase 1	AT5G04930.1	aminophospholipid ATPase 1 	LOC_Os03g21680.4	"phospholipid-transporting ATPase, putative, expressed"	Medtr3g008480.2	"ATPase, E1-E2 type "	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.206358.1.S1_at	A	A1TS	POPTR_0006s11010	POPTR_0006s11010 (11)	scaffold_6:8358528-8358713(+) (11)	NA	Q39030	Serine/threonine-protein kinase AtPK2/AtPK19	AT3G08720.2	serine/threonine protein kinase 2 	LOC_Os03g21620.1	"AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206359.1.S1_at	A	A1TS	POPTR_0006s11020	POPTR_0006s11020 (11)	scaffold_6:8361445-8361486(+) (11)	NA	Q9LZV4	"Serine/threonine-protein kinase STN8, chloroplastic"	AT5G01920.1	Protein kinase superfamily protein 	LOC_Os05g40180.1	"serine/threonine-protein kinase stt7, chloroplast precursor, putative, expressed"	Medtr8g005520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206359.1.S1_s_at	A	A2TS	POPTR_0006s11020	POPTR_0016s14540 (11)//POPTR_0006s11020 (11)	scaffold_16:13739532-13739698(+) (11)//scaffold_6:8360931-8361097(+) (11)	NA	Q9LZV4	"Serine/threonine-protein kinase STN8, chloroplastic"	AT5G01920.1	Protein kinase superfamily protein 	LOC_Os05g40180.1	"serine/threonine-protein kinase stt7, chloroplast precursor, putative, expressed"	Medtr8g005520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206359.1.S1_x_at	A	A1TS	POPTR_0006s11020	POPTR_0006s11020 (11)	scaffold_6:8360960-8361770(+) (11)	NA	Q9LZV4	"Serine/threonine-protein kinase STN8, chloroplastic"	AT5G01920.1	Protein kinase superfamily protein 	LOC_Os05g40180.1	"serine/threonine-protein kinase stt7, chloroplast precursor, putative, expressed"	Medtr8g005520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206360.1.S1_at	A	A1TS	POPTR_0006s11030	POPTR_0006s11030 (11)	scaffold_6:8363222-8363518(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206362.1.S1_at	A	A1TS	POPTR_0006s11080	POPTR_0006s11080 (11)	scaffold_6:8399151-8400100(+) (11)	NA	NA	NA	AT2G38580.1	Mitochondrial ATP synthase D chain-related protein 	LOC_Os03g21520.2	expressed protein	Medtr8g116190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206363.1.S1_at	A	A1TS	POPTR_0006s11100	POPTR_0006s11100 (11)	scaffold_6:8405092-8405240(+) (11)	NA	P53391	High affinity sulfate transporter 1	NA	NA	LOC_Os03g09970.4	"sulfate transporter, putative, expressed"	CU651589_4.1	Sulphate transporter CU651589.4 23367-27023 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206363.1.S1_x_at	A	A1TS	POPTR_0006s11100	POPTR_0006s11100 (11)	scaffold_6:8405092-8405240(+) (11)	NA	P53391	High affinity sulfate transporter 1	NA	NA	LOC_Os03g09970.4	"sulfate transporter, putative, expressed"	CU651589_4.1	Sulphate transporter CU651589.4 23367-27023 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206364.1.S1_s_at	A	A2TS	POPTR_0006s11160	POPTR_0008s12470 (11)//POPTR_0006s11160 (11)	scaffold_6:8471913-8472646(+) (11)//scaffold_8:8062599-8063333(-) (11)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT1G22950.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206365.1.S1_at	A	A1TS	POPTR_0006s14650	POPTR_0006s14650 (11)	scaffold_6:12009457-12009843(+) (11)	NA	Q9LF64	RING-H2 finger protein ATL52	AT5G17600.1	RING/U-box superfamily protein 	LOC_Os02g15060.1	"zinc finger, C3HC4 type domain containing protein"	Medtr5g026890.1	"Putative RING-H2 finger protein ATL1H precursor, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206367.1.S1_at	A	A1TS	POPTR_0006s14690	POPTR_0006s14690 (11)	scaffold_6:12055504-12055944(-) (11)	NA	NA	NA	AT3G60310.1	unknown protein; Has 22 Blast hits to 18 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g05640.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206368.1.S1_at	A	A1TS	POPTR_0006s14700	POPTR_0006s14700 (11)	scaffold_6:12067477-12067927(-) (11)	NA	NA	NA	AT1G54200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits to 581 proteins in 136 species: Archae - 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink). 	LOC_Os03g07920.1	expressed protein	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206370.1.S1_at	A	A1TA	POPTR_0006s14710	POPTR_0006s14710 (11)	scaffold_6:12076962-12077147(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206371.1.S1_at	A	A1TS	POPTR_0006s14760	POPTR_0006s14760 (11)	scaffold_6:12121253-12123327(+) (11)	NA	O81488	PHD finger protein At5g26210	AT5G20510.1	alfin-like 5 	LOC_Os01g66420.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206372.1.S1_at	A	A1TS	POPTR_0006s14770	POPTR_0006s14770 (11)	scaffold_6:12132596-12133003(-) (11)	NA	NA	NA	AT5G20610.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). 	LOC_Os01g51640.1	expressed protein	Medtr1g019330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206373.1.S1_at	A	A1TS	POPTR_0006s14790	POPTR_0006s14790 (11)	scaffold_6:12164836-12165112(-) (11)	NA	P54697	Myosin-J heavy chain	AT5G20490.1	Myosin family protein with Dil domain 	LOC_Os03g48140.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.206373.1.S1_s_at	A	A1TS	POPTR_0006s14790	POPTR_0006s14790 (11)	scaffold_6:12164806-12165491(-) (11)	NA	P54697	Myosin-J heavy chain	AT5G20490.1	Myosin family protein with Dil domain 	LOC_Os03g48140.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.206374.1.S1_at	A	A1TS	POPTR_0006s14810	POPTR_0006s14810 (11)	scaffold_6:12202852-12203435(-) (11)	NA	NA	NA	AT5G57070.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g120690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206375.1.S1_at	A	A2TS	POPTR_0006s14870	POPTR_0006s14870 (10)//POPTR_0006s14860 (9)	scaffold_6:12310051-12310312(-) (9)//scaffold_6:12341678-12341941(-) (10)	NA	NA	NA	AT2G19390.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29790.1); Has 203 Blast hits to 188 proteins in 60 species: Archae - 0; Bacteria - 11; Metazoa - 24; Fungi - 34; Plants - 93; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). 	LOC_Os05g28300.1	expressed protein	Medtr2g047150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206376.1.S1_at	A	A1TS	POPTR_0006s14890	POPTR_0006s14890 (11)	scaffold_6:12366243-12371963(-) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G33080.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g046770.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206377.1.S1_at	A	A1TS	POPTR_0006s14910	POPTR_0006s14910 (11)	scaffold_6:12401057-12401590(-) (11)	NA	Q42484	Disease resistance protein RPS2	AT4G26090.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.206378.1.S1_at	A	A1TS	POPTR_0006s14930	POPTR_0006s14930 (10)	scaffold_6:12414817-12414985(-) (11)	NA	Q38932	"Lycopene epsilon cyclase, chloroplastic"	AT5G57030.1	Lycopene beta/epsilon cyclase protein 	LOC_Os01g39960.1	"lycopene epsilon cyclase, chloroplast precursor, putative, expressed"	Medtr2g046700.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.206380.1.S1_at	A	A1TS	POPTR_0006s15020	POPTR_0006s15020 (11)	scaffold_6:12488301-12489178(-) (11)	NA	NA	NA	AT4G33050.3	calmodulin-binding family protein 	LOC_Os01g38980.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206381.1.S1_at	A	A1TS	POPTR_0006s15050	POPTR_0006s15050 (11)	scaffold_6:12515150-12515826(-) (11)	NA	P41152	Heat shock factor protein HSF30	AT2G26150.1	heat shock transcription factor A2 	LOC_Os03g53340.6	"HSF-type DNA-binding domain containing protein, expressed"	Medtr3g139780.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.206382.1.S1_at	A	A1TS	POPTR_0006s15060	POPTR_0006s15060 (11)	scaffold_6:12525090-12525769(+) (11)	NA	Q8L7V3	Probable methyltransferase PMT26	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g49860.1	"methyltransferase, putative, expressed"	Medtr3g143140.2	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206383.1.S1_at	A	A1TS	POPTR_0006s15080	POPTR_0006s15080 (11)	scaffold_6:12528265-12528719(-) (11)	NA	Q9LTS7	Zinc finger CCCH domain-containing protein 65	AT5G56930.1	CCCH-type zinc finger family protein 	LOC_Os01g39100.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g104100.1	hypothetical protein 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.206384.1.S1_at	A	A1TS	POPTR_0006s15310	POPTR_0006s15310 (11)	scaffold_6:12664339-12665612(-) (11)	NA	Q9LTS4	Putative transcription factor bHLH041	AT5G56960.1	basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os01g39330.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g046170.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.206385.1.S1_at	A	A1TS	POPTR_0006s15340	POPTR_0006s15340 (11)	scaffold_6:12699631-12700957(-) (11)	NA	Q6YYA3	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT4G29750.1	CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os09g19850.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr1g089760.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.206386.1.S1_at	A	A1TS	POPTR_0006s15370	POPTR_0006s15370 (11)	scaffold_6:12718934-12719399(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206387.1.S1_at	A	A1TS	POPTR_0006s15410	POPTR_0006s15410 (11)	scaffold_6:12786656-12787204(+) (11)	NA	Q9STR4	1-aminocyclopropane-1-carboxylate synthase 7	AT4G26200.1	1-amino-cyclopropane-1-carboxylate synthase 7 	LOC_Os05g10780.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr6g093330.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.206388.1.S1_at	A	A1TS	POPTR_0006s15430	POPTR_0006s15430 (11)	scaffold_6:12797880-12799023(+) (11)	NA	Q54I39	IST1-like protein	AT2G19710.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os01g51010.1	"DUF292 domain containing protein, expressed"	Medtr6g093400.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206390.1.S1_s_at	A	A1TS	POPTR_0006s15450	POPTR_0006s15450 (11)	scaffold_6:12835085-12835336(-) (11)//scaffold_6:12835367-12835618(-) (11)//scaffold_6:12835649-12835900(-) (11)//scaffold_6:12835931-12836182(-) (11)	NA	NA	NA	AT5G56780.1	effector of transcription2 	LOC_Os07g39800.1	"transcription repressor HOTR, putative, expressed"	Medtr6g092700.1	"transcripteion factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206391.1.S1_at	A	A1TS	POPTR_0006s15580	POPTR_0006s15580 (11)	scaffold_6:13019475-13020049(-) (11)	NA	Q9SU79	Probable polyamine oxidase 5	AT4G29720.1	polyamine oxidase 5 	LOC_Os01g51320.1	"peroxisomal N-acetyl-spermine/spermidine oxidase precursor, putative, expressed"	Medtr2g045700.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.206391.1.S1_x_at	A	A1TS	POPTR_0006s15580	POPTR_0006s15580 (11)	scaffold_6:13019475-13020049(-) (11)	NA	Q9SU79	Probable polyamine oxidase 5	AT4G29720.1	polyamine oxidase 5 	LOC_Os01g51320.1	"peroxisomal N-acetyl-spermine/spermidine oxidase precursor, putative, expressed"	Medtr2g045700.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.206392.1.S1_at	A	A1TS	POPTR_0006s15600	POPTR_0006s15600 (11)	scaffold_6:13054297-13054862(+) (11)	NA	NA	NA	AT4G29560.1	"CONTAINS InterPro DOMAIN/s: Fanconi Anaemia group E protein, C-terminal (InterPro:IPR021025); Has 41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os06g37570.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206393.1.S1_at	A	A1TS	POPTR_0006s15610	POPTR_0006s15610 (11)	scaffold_6:13055205-13055303(-) (11)	NA	P31237	1-aminocyclopropane-1-carboxylate oxidase	AT2G19590.1	ACC oxidase 1 	LOC_Os06g37590.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr2g029180.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.206393.1.S1_s_at	A	A1TS	POPTR_0006s15610	POPTR_0006s15610 (11)	scaffold_6:13055378-13055790(-) (11)	NA	P31237	1-aminocyclopropane-1-carboxylate oxidase	AT2G19590.1	ACC oxidase 1 	LOC_Os06g37590.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr2g029180.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.206394.1.S1_at	A	A1TS	POPTR_0006s15680	POPTR_0006s15680 (11)	scaffold_6:13203235-13203578(+) (11)	NA	NA	NA	AT5G56980.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g51310.1	expressed protein	Medtr2g045940.1	"cDNA-5-encoded protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206394.1.S1_x_at	A	A1TS	POPTR_0006s15680	POPTR_0006s15680 (11)	scaffold_6:13202918-13203574(+) (11)	NA	NA	NA	AT5G56980.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g51310.1	expressed protein	Medtr2g045940.1	"cDNA-5-encoded protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206395.1.S1_at	A	A1TS	POPTR_0006s15690	POPTR_0006s15690 (11)	scaffold_6:13211566-13212166(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.206396.1.S1_at	A	A1TS	POPTR_0006s15700	POPTR_0006s15700 (11)	scaffold_6:13249225-13250015(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206397.1.S1_at	A	A1TS	POPTR_0006s15720	POPTR_0006s15720 (11)	scaffold_6:13284772-13285579(+) (11)	NA	Q9LTS3	Cytokinin dehydrogenase 3	AT5G56970.1	cytokinin oxidase 3 	LOC_Os01g56810.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr2g045960.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
PtpAffx.206398.1.S1_at	A	A1TS	POPTR_0006s15730	POPTR_0006s15730 (11)	scaffold_6:13302221-13303394(-) (11)	NA	Q94AA4	6-phosphofructokinase 3	AT4G26270.1	phosphofructokinase 3 	LOC_Os01g09570.1	"6-phosphofructokinase, putative, expressed"	Medtr4g160270.1	Phosphofructokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206399.1.S1_s_at	A	A2TS	POPTR_0018s06790	POPTR_0018s06790 (11)//POPTR_0006s15740 (9)	scaffold_18:6825182-6825917(+) (11)//scaffold_6:13339792-13340572(+) (9)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G29230.1	NAC domain containing protein 75 	LOC_Os01g09550.1	"no apical meristem protein, putative, expressed"	Medtr4g160220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.2064.1.S1_a_at	A	A1TS	POPTR_0009s07980	POPTR_0009s07980 (11)	scaffold_9:7397490-7398379(+) (11)	NA	Q642R9	Rab3 GTPase-activating protein catalytic subunit	AT5G58510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g18440.1	expressed protein	Medtr5g100640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206401.1.S1_at	A	A1TS	POPTR_0006s15790	POPTR_0006s15790 (9)	scaffold_6:13445934-13446220(+) (10)	NA	Q54S77	Probable serine/threonine-protein kinase vps15	AT4G29380.1	protein kinase family protein / WD-40 repeat family protein 	LOC_Os02g55340.1	"WD domain and HEAT domain containing protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206403.1.S1_at	A	A1TS	POPTR_0006s15830	POPTR_0006s15830 (11)	scaffold_6:13513833-13514344(+) (11)	NA	Q9ZQE5	Pentatricopeptide repeat-containing protein At2g15690	AT2G15690.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g09530.2	"pentatricopeptide, putative, expressed"	Medtr6g093100.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206404.1.S1_at	A	A1TS	POPTR_0006s15890	POPTR_0006s15890 (9)	scaffold_6:13565635-13566413(+) (9)	NA	O82197	Vacuolar protein sorting-associated protein 32 homolog 1	AT2G19830.1	SNF7 family protein 	LOC_Os06g40620.2	"SNF7 domain containing protein, putative, expressed"	Medtr4g160490.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.206406.1.S1_at	A	A1TS	POPTR_0006s15950	POPTR_0006s15950 (11)	scaffold_6:13722502-13722971(+) (11)	NA	Q38998	Potassium channel AKT1	AT2G26650.1	K+ transporter 1 	LOC_Os01g45990.1	"potassium channel AKT1, putative, expressed"	Medtr8g119290.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.206407.1.S1_at	A	A1TS	POPTR_0006s15960	POPTR_0006s15960 (11)	scaffold_6:13731665-13732286(-) (11)	NA	Q9XI23	Boron transporter 4	AT1G15460.1	HCO3- transporter family 	LOC_Os01g08020.1	"boron transporter protein, putative, expressed"	Medtr2g125700.1	"HCO3- transporter, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206409.1.S1_at	A	A1TS	POPTR_0006s15990	POPTR_0006s15990 (11)	scaffold_6:13751339-13752346(-) (11)	NA	Q94BQ2	26S protease regulatory subunit 8 homolog B	AT5G20000.1	AAA-type ATPase family protein 	LOC_Os02g11050.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g083690.2	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.206410.1.S1_at	A	A1TS	POPTR_0006s16000	POPTR_0006s16000 (11)	scaffold_6:13776104-13776902(+) (11)	NA	NA	NA	AT2G03500.1	Homeodomain-like superfamily protein 	LOC_Os01g08160.1	"MYB family transcription factor, putative, expressed"	Medtr8g118880.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206411.1.S1_at	A	A1TS	POPTR_0006s16010	POPTR_0006s16010 (10)	scaffold_6:13794573-13795312(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206412.1.S1_at	A	A1TS	POPTR_0006s22040	POPTR_0006s22040 (10)	scaffold_6:21052473-21053100(+) (10)	NA	NA	NA	AT3G52460.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os07g34720.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g105350.1	Harpin-induced 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206413.1.S1_at	A	A1TS	POPTR_0006s22030	POPTR_0006s22030 (11)	scaffold_6:21047709-21049005(+) (11)	NA	O54922	Exocyst complex component 7	AT5G52340.1	exocyst subunit exo70 family protein A2 	LOC_Os11g05880.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr1g112310.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.206414.1.S1_at	A	A1TS	POPTR_0006s22020	POPTR_0006s22020 (11)	scaffold_6:21040361-21041824(+) (11)	NA	NA	NA	AT2G35950.1	embryo sac development arrest 12 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206415.1.S1_at	A	A1TS	POPTR_0006s22010	POPTR_0006s22010 (9)	scaffold_6:21030651-21030720(-) (11)	NA	Q9CAF2	"Nudix hydrolase 26, chloroplastic"	AT3G10620.1	nudix hydrolase homolog 26 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.206417.1.S1_at	A	A1TS	POPTR_0006s22000	POPTR_0006s22000 (11)	scaffold_6:21022785-21023250(+) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT2G01820.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g58910.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr2g105170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.206418.1.S1_at	A	A1MS	POPTR_0006s21970	POPTR_0006s21970 (11)	scaffold_6:20979973-20982314(-) (11)	NA	Q6DW74	"Digalactosyldiacylglycerol synthase 1, chloroplastic"	AT3G11670.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g34000.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr7g084010.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.206419.1.S1_at	A	A1TS	POPTR_0006s21960	POPTR_0006s21960 (11)	scaffold_6:20962207-20963223(+) (11)	NA	Q9SRM9	Aluminum-activated malate transporter 8	AT3G11680.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105110.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206420.1.S1_at	A	A1TS	POPTR_0006s21950	POPTR_0006s21950 (11)	scaffold_6:20915941-20916455(-) (11)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206421.1.S1_at	A	A1TS	POPTR_0006s21920	POPTR_0006s21920 (11)	scaffold_6:20888476-20888514(-) (11)	NA	Q9SF15	E3 ubiquitin-protein ligase PUB24	AT3G11840.1	plant U-box 24 	LOC_Os04g58920.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.206422.1.S1_s_at	A	A1TS	POPTR_0006s21910	POPTR_0006s21910 (11)	scaffold_6:20873801-20874278(-) (11)	NA	Q9SVC6	E3 ubiquitin-protein ligase PUB22	AT3G52450.1	plant U-box 22 	LOC_Os02g33590.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.206423.1.S1_x_at	A	A1TS	POPTR_0006s21700	POPTR_0006s21700 (11)	scaffold_6:20713578-20713762(+) (11)	NA	Q9SVC5	Dof zinc finger protein DOF3.5	AT3G52440.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os05g36900.1	"dof zinc finger domain containing protein, putative"	Medtr3g125030.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.206424.1.S1_at	A	A1TS	POPTR_0006s21670	POPTR_0006s21670 (11)	scaffold_6:20691797-20692456(-) (11)	NA	Q9ZSD4	Syntaxin-121	AT3G11820.1	syntaxin of plants 121 	LOC_Os06g39050.1	"syntaxin, putative, expressed"	Medtr1g149850.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.206424.1.S1_x_at	A	A1TS	POPTR_0006s21670	POPTR_0006s21670 (11)	scaffold_6:20691528-20692456(-) (11)	NA	Q9ZSD4	Syntaxin-121	AT3G11820.1	syntaxin of plants 121 	LOC_Os06g39050.1	"syntaxin, putative, expressed"	Medtr1g149850.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.206425.1.S1_at	A	A1TS	POPTR_0006s21660	POPTR_0006s21660 (11)	scaffold_6:20683167-20683450(-) (11)	NA	Q8GX46	Transcription factor bHLH91	AT2G31210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g51070.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	AC235671_17.1	Helix-loop-helix DNA-binding AC235671.2 74985-73151 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.206425.1.S1_x_at	A	A1TS	POPTR_0006s21660	POPTR_0006s21660 (11)	scaffold_6:20683167-20684000(-) (11)	NA	Q8GX46	Transcription factor bHLH91	AT2G31210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g51070.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	AC235671_17.1	Helix-loop-helix DNA-binding AC235671.2 74985-73151 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.206426.1.S1_at	A	A1TS	POPTR_0006s21640	POPTR_0006s21640 (11)	scaffold_6:20676336-20677688(+) (11)	NA	Q9M9X4	Nuclear transcription factor Y subunit A-2	AT3G05690.1	"nuclear factor Y, subunit A2 "	LOC_Os12g42400.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr1g149800.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.206427.1.S1_at	A	A1MS	POPTR_0006s21640	POPTR_0006s21640 (10)	scaffold_6:20674094-20674510(+) (10)	NA	Q9M9X4	Nuclear transcription factor Y subunit A-2	AT3G05690.1	"nuclear factor Y, subunit A2 "	LOC_Os12g42400.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr1g149800.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.206428.1.S1_at	A	A1TS	POPTR_0006s21630	POPTR_0006s21630 (11)	scaffold_6:20654669-20655250(-) (11)	NA	Q9FJK3	Agamous-like MADS-box protein AGL80	AT2G40210.1	AGAMOUS-like 48 	LOC_Os01g18420.1	OsMADS88 - MADS-box family gene with M-gamma type-box	Medtr3g087250.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.206429.1.S1_at	A	A1TS	POPTR_0006s21610	POPTR_0006s21610 (11)	scaffold_6:20644544-20644891(-) (11)	NA	Q8RX29	RING-H2 finger protein ATL70	AT2G35910.1	RING/U-box superfamily protein 	LOC_Os07g06560.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g149630.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206434.1.S1_at	A	A1TS	POPTR_0006s21550	POPTR_0006s21550 (9)	scaffold_6:20597749-20597916(-) (9)	NA	Q9C585	Ubiquitin carboxyl-terminal hydrolase 8	AT5G22030.1	ubiquitin-specific protease 8 	LOC_Os07g06610.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.206435.1.S1_s_at	A	A1TS	POPTR_0006s21510	POPTR_0006s21510 (11)	scaffold_6:20560556-20561126(-) (11)	NA	Q9FNG8	"Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial"	AT5G06400.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g27060.1	"PPR repeat domain containing protein, putative"	Medtr3g138450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206437.1.S1_at	A	A1TS	POPTR_0006s21490	POPTR_0006s21490 (9)	scaffold_6:20552279-20553190(-) (9)	NA	Q06850	Calcium-dependent protein kinase 1	AT5G04870.1	calcium dependent protein kinase 1 	LOC_Os03g57450.1	"CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206438.1.S1_at	A	A1TS	POPTR_0006s21440	POPTR_0006s21440 (11)	scaffold_6:20506079-20506426(+) (11)	NA	NA	NA	AT3G11690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g104580.1	"pollen preferential protein^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206439.1.S1_at	A	A1TS	POPTR_0006s21430	POPTR_0006s21430 (11)	scaffold_6:20493047-20493391(+) (11)	NA	NA	NA	AT3G52360.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35850.1); Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206439.1.S1_x_at	A	A1TS	POPTR_0006s21430	POPTR_0006s21430 (11)	scaffold_6:20493047-20493391(+) (11)	NA	NA	NA	AT3G52360.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35850.1); Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206440.1.S1_at	A	A1TS	POPTR_0006s21420	POPTR_0006s21420 (11)	scaffold_6:20480370-20481519(+) (11)	NA	Q5IH14	Sucrose-phosphatase 1	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os01g27880.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.206442.1.S1_at	A	A1TS	POPTR_0006s21410	POPTR_0006s21410 (11)	scaffold_6:20467612-20469197(-) (11)	NA	Q8S4R4	"Carotenoid isomerase, chloroplastic"	AT1G06820.1	carotenoid isomerase 	LOC_Os11g36440.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206443.1.S1_at	A	A1TS	POPTR_0006s21390	POPTR_0006s21390 (11)	scaffold_6:20439417-20441555(+) (11)	NA	Q9ZV15	Calcium-dependent protein kinase 20	AT2G38910.1	calcium-dependent protein kinase 20 	LOC_Os03g57450.1	"CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206444.1.S1_at	A	A1TS	POPTR_0006s21380	POPTR_0006s21380 (11)	scaffold_6:20426315-20426573(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g01260.1	"VQ domain containing protein, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206445.1.S1_s_at	A	A1TS	POPTR_0006s21370	POPTR_0006s21370 (11)	scaffold_6:20418284-20419275(-) (11)	NA	Q9NYP3	Protein downstream neighbor of Son	AT3G54750.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. 	LOC_Os12g42700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206446.1.S1_at	A	A1TS	POPTR_0006s21340	POPTR_0006s21340 (11)	scaffold_6:20397892-20398849(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206447.1.S1_at	A	A1TS	POPTR_0006s21310	POPTR_0006s21310 (11)	scaffold_6:20377955-20380776(+) (11)	NA	Q94AX4	"D-lactate dehydrogenase [cytochrome], mitochondrial"	AT5G06580.1	FAD-linked oxidases family protein 	LOC_Os07g06890.1	"FAD-linked oxidoreductase protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206448.1.S1_at	A	A1TS	POPTR_0006s21300	POPTR_0006s21300 (9)	scaffold_6:20367237-20370498(+) (10)	NA	Q7XZZ3	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT2G38920.2	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related 	LOC_Os03g44810.2	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206449.1.S1_s_at	A	A1TS	POPTR_0006s21260	POPTR_0006s21260 (11)	scaffold_6:20347705-20348809(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.2	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.2	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.206450.1.S1_at	A	A1TS	POPTR_0006s21240	POPTR_0006s21240 (11)	scaffold_6:20329156-20329656(+) (11)	NA	O80437	Glycerol-3-phosphate acyltransferase 6	AT2G38110.1	glycerol-3-phosphate acyltransferase 6 	LOC_Os03g52570.1	"glycerol-3-phosphate acyltransferase, putative"	Medtr1g059560.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.206451.1.S1_at	A	A1TS	POPTR_0006s21230	POPTR_0006s21230 (9)	scaffold_6:20324736-20325528(-) (11)	NA	NA	NA	AT1G10385.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os07g10110.1	expressed protein	Medtr4g023160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206453.1.S1_at	A	A1TS	POPTR_0006s21190	POPTR_0006s21190 (11)	scaffold_6:20281663-20282651(+) (11)	NA	NA	NA	AT3G58480.1	calmodulin-binding family protein 	LOC_Os10g27170.1	"calmodulin-binding protein, putative, expressed"	Medtr4g134270.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206456.1.S1_at	A	A1TS	POPTR_0006s21160	POPTR_0006s21160 (11)	scaffold_6:20248918-20249799(-) (11)	NA	Q921M3	Splicing factor 3B subunit 3	AT3G11960.1	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 	LOC_Os07g10390.1	"cleavage and polyadenylation specificity factor, putative, expressed"	AC235488_30.1	"CPSF A subunit, C-terminal AC235488.1 132000-145786 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.206456.1.S1_s_at	A	A1TS	POPTR_0006s21160	POPTR_0006s21160 (11)	scaffold_6:20248964-20249478(-) (11)	NA	Q921M3	Splicing factor 3B subunit 3	AT3G11960.1	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 	LOC_Os07g10390.1	"cleavage and polyadenylation specificity factor, putative, expressed"	AC235488_30.1	"CPSF A subunit, C-terminal AC235488.1 132000-145786 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.206457.1.S1_at	A	A1MA	POPTR_0006s21160	POPTR_0006s21160 (11)	scaffold_6:20246998-20247515(+) (11)	NA	Q921M3	Splicing factor 3B subunit 3	AT3G11960.1	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 	LOC_Os07g10390.1	"cleavage and polyadenylation specificity factor, putative, expressed"	AC235488_30.1	"CPSF A subunit, C-terminal AC235488.1 132000-145786 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.206458.1.S1_at	A	A1TS	POPTR_0006s21130	POPTR_0006s21130 (11)	scaffold_6:20208655-20210635(-) (11)	NA	NA	NA	AT5G06610.1	Protein of unknown function (DUF620) 	LOC_Os03g07120.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206459.1.S1_at	A	A1TS	POPTR_0006s21110	POPTR_0006s21110 (11)	scaffold_6:20197657-20201275(-) (11)	NA	Q9FG08	Histone-lysine N-methyltransferase ATXR4	AT5G06620.1	SET domain protein 38 	LOC_Os10g27060.1	"SET domain protein 123, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206460.1.S1_at	A	A1TS	POPTR_0006s21100	POPTR_0006s21100 (11)	scaffold_6:20193576-20194106(-) (11)	NA	Q08891	Fatty acyl-CoA reductase 2	AT3G11980.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os03g07140.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206461.1.S1_at	A	A1TS	POPTR_0006s21090	POPTR_0006s21090 (11)	scaffold_6:20185219-20186985(-) (11)	NA	Q9P6N5	Dihydrosphingosine 1-phosphate phosphatase C823.11	AT3G58490.1	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os03g59070.1	"phosphatase, putative, expressed"	AC235488_22.2	"Phosphoesterase, PA-phosphatase related AC235488.1 98822-95448 F EGN_Mt090430 200"	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.206462.1.S1_at	A	A1TS	POPTR_0006s21060	POPTR_0006s21060 (11)	scaffold_6:20171000-20171560(+) (11)	NA	NA	NA	AT3G58520.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os04g46170.2	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	AC235488_36.1	"Protein of unknown function DUF860, plant AC235488.1 174238-172773 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206463.1.S1_at	A	A1TS	POPTR_0006s21050	POPTR_0006s21050 (11)	scaffold_6:20158751-20159044(-) (11)	NA	Q8LB33	F-box protein At3g58530	AT3G58530.1	RNI-like superfamily protein 	LOC_Os02g17990.2	"Leucine Rich Repeat family protein, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.206464.1.S1_at	A	A1TS	POPTR_0006s21040	POPTR_0006s21040 (11)	scaffold_6:20155424-20155845(+) (11)	NA	NA	NA	AT2G44300.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g09970.1	"LTPL84 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g133890.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206465.1.S1_at	A	A1TS	POPTR_0006s21020	POPTR_0006s21020 (11)	scaffold_6:20128562-20129196(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206466.1.S1_at	A	A1TS	POPTR_0006s21000	POPTR_0006s21000 (10)	scaffold_6:20123812-20124233(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206467.1.S1_at	A	A1TS	POPTR_0006s20940	POPTR_0006s20940 (11)	scaffold_6:19984035-19984610(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.206469.1.S1_at	A	A1TS	POPTR_0006s20920	POPTR_0006s20920 (11)	scaffold_6:19965132-19966194(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206470.1.S1_at	A	A1TS	POPTR_0006s20890	POPTR_0006s20890 (11)	scaffold_6:19927574-19928160(+) (11)	NA	Q55DB6	Activator of 90 kDa heat shock protein ATPase homolog	AT3G12050.1	Aha1 domain-containing protein 	LOC_Os08g36150.1	"activator of 90 kDa heat shock protein ATPase homolog, putative, expressed"	Medtr7g112200.1	"Activator of Hsp90 ATPase, N-terminal "	GO:0006950|response to stress	GO:0051087|chaperone binding||GO:0001671|ATPase activator activity	GO:0005737|cytoplasm
PtpAffx.206471.1.S1_at	A	A1TS	POPTR_0006s20880	POPTR_0006s20880 (9)	scaffold_6:19922134-19922671(-) (11)	NA	Q55BK0	Ubiquitin fusion degradation protein 1 homolog	AT2G21270.2	ubiquitin fusion degradation 1 	LOC_Os04g48770.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.206472.1.S1_at	A	A1TS	POPTR_0006s20850	POPTR_0006s20850 (11)	scaffold_6:19885722-19886758(-) (11)	NA	P93749	Probable protein kinase At2g41970	AT2G41970.1	Protein kinase superfamily protein 	LOC_Os02g35760.2	"STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed"	Medtr7g112280.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206473.1.S1_at	A	A1TS	POPTR_0006s20840	POPTR_0006s20840 (11)	scaffold_6:19871832-19872144(-) (11)	NA	NA	NA	AT5G06700.1	Plant protein of unknown function (DUF828) 	LOC_Os06g10560.1	"leaf senescence related protein, putative, expressed"	Medtr7g112170.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206473.1.S1_s_at	A	A1TS	POPTR_0006s20840	POPTR_0006s20840 (11)	scaffold_6:19871915-19872361(-) (11)	NA	NA	NA	AT5G06700.1	Plant protein of unknown function (DUF828) 	LOC_Os06g10560.1	"leaf senescence related protein, putative, expressed"	Medtr7g112170.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206474.1.S1_at	A	A1TS	POPTR_0006s20830	POPTR_0006s20830 (11)	scaffold_6:19865807-19866298(+) (11)	NA	Q9C6Z0	F-box/kelch-repeat protein At1g30090	AT1G30090.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os07g05880.2	"OsFBK18 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g024470.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206476.1.S1_at	A	A1TS	POPTR_0006s20820	POPTR_0006s20820 (11)	scaffold_6:19851103-19852977(+) (11)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr7g112150.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.206477.1.S1_at	A	A1TS	POPTR_0006s20810	POPTR_0006s20810 (11)	scaffold_6:19821892-19822260(+) (11)	NA	Q8GUK7	E3 ubiquitin-protein ligase RMA3	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os08g06510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206477.1.S1_s_at	A	A1TS	POPTR_0006s20810	POPTR_0006s20810 (11)	scaffold_6:19821724-19822350(+) (11)	NA	Q8GUK7	E3 ubiquitin-protein ligase RMA3	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os08g06510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206478.1.S1_at	A	A1TS	POPTR_0006s20790	POPTR_0006s20790 (11)	scaffold_6:19779429-19779965(-) (11)	NA	NA	NA	AT2G42040.1	CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g53360.1	expressed protein	Medtr7g112050.1	WRC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206479.1.S1_at	A	A1TS	POPTR_0006s20760	POPTR_0006s20760 (10)	scaffold_6:19737095-19737690(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206481.1.S1_at	A	A1TS	POPTR_0006s20740	POPTR_0006s20740 (11)	scaffold_6:19716478-19717581(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g22290.1	"legume lectins beta domain containing protein, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206481.1.S1_x_at	A	A1TS	POPTR_0006s20740	POPTR_0006s20740 (11)	scaffold_6:19716478-19718032(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g22290.1	"legume lectins beta domain containing protein, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206482.1.S1_at	A	A1TS	POPTR_0006s20650	POPTR_0006s20650 (11)	scaffold_6:19669445-19669690(+) (11)	NA	NA	NA	AT2G42140.1	VQ motif-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206483.1.S1_at	A	A1MS	POPTR_0006s20640	POPTR_0006s20640 (9)	scaffold_6:19658839-19659654(+) (9)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.206484.1.S1_s_at	A	A1TS	POPTR_0006s20590	POPTR_0006s20590 (10)	scaffold_6:19615017-19615172(-) (10)	NA	NA	NA	AT1G20970.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os08g40250.1	expressed protein	Medtr1g039770.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206485.1.S1_at	A	A1TS	POPTR_0006s20590	POPTR_0006s20590 (11)	scaffold_6:19613382-19613934(-) (11)	NA	NA	NA	AT1G20970.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os08g40250.1	expressed protein	Medtr1g039770.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206487.1.S1_at	A	A1TS	POPTR_0006s20560	POPTR_0006s20560 (11)	scaffold_6:19591768-19592884(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206488.1.S1_at	A	A1TS	POPTR_0006s20520	POPTR_0006s20520 (9)	scaffold_6:19531897-19540126(-) (11)	NA	Q42798	Cytochrome P450 93A1	AT2G42250.1	"cytochrome P450, family 712, subfamily A, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g111280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.206489.1.S1_at	A	A1TS	POPTR_0006s20510	POPTR_0006s20510 (11)	scaffold_6:19527036-19528390(-) (11)	NA	Q9FG24	Protein STRUBBELIG-RECEPTOR FAMILY 2	AT5G06820.1	STRUBBELIG-receptor family 2 	LOC_Os02g09740.1	"STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed"	Medtr7g111570.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.206491.1.S1_at	A	A1TS	POPTR_0006s20460	POPTR_0006s20460 (11)	scaffold_6:19467563-19468415(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G46920.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os06g08280.1	"protein kinase domain containing protein, expressed"	Medtr8g122640.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206493.1.S1_at	A	A1TS	POPTR_0006s20400	POPTR_0006s20400 (11)	scaffold_6:19440489-19440668(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g122770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206494.1.S1_at	A	A1TS	POPTR_0006s20370	POPTR_0006s20370 (11)	scaffold_6:19413293-19416105(-) (11)	NA	Q9ERA6	Tuftelin-interacting protein 11	AT3G09850.1	D111/G-patch domain-containing protein 	LOC_Os08g19170.1	"G-patch domain containing protein, expressed"	Medtr8g122840.1	D111/G-patch; Single-stranded nucleic acid binding R3H 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.206495.1.S1_at	A	A1TS	POPTR_0006s20350	POPTR_0006s20350 (11)	scaffold_6:19404449-19405399(-) (11)	NA	Q9FIJ7	"Probable adenylate kinase 2, chloroplastic"	AT5G35170.1	adenylate kinase family protein 	LOC_Os08g19140.1	"adenylate kinase family protein, putative, expressed"	Medtr4g041640.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206496.1.S1_at	A	A1TS	POPTR_0006s20340	POPTR_0006s20340 (11)	scaffold_6:19395914-19396633(-) (11)	NA	Q10710	Sugar carrier protein A	AT4G02050.1	sugar transporter protein 7 	LOC_Os09g24924.1	"transporter family protein, putative, expressed"	Medtr8g122780.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.206497.1.S1_s_at	A	A1MS	POPTR_0006s20330	POPTR_0006s20330 (11)	scaffold_6:19382095-19383007(-) (11)	NA	Q9FII5	Leucine-rich repeat receptor-like protein kinase TDR	AT5G51350.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os02g02140.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr2g034580.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.206498.1.S1_s_at	A	A1TS	POPTR_0006s20320	POPTR_0006s20320 (11)	scaffold_6:19380937-19381112(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g32025.1	"uroporphyrinogen-III synthase, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206499.1.S1_at	A	A1TS	POPTR_0006s20310	POPTR_0006s20310 (10)	scaffold_6:19345214-19347539(-) (10)	NA	P84634	Dicer-like protein 4	AT5G20320.1	dicer-like 4 	LOC_Os04g43050.1	"Dicer, putative, expressed"	Medtr3g139020.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0004525|ribonuclease III activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.206500.1.S1_at	A	A1TS	POPTR_0006s20290	POPTR_0006s20290 (11)	scaffold_6:19332772-19333381(+) (11)	NA	Q9M2A0	"ATPase 8, plasma membrane-type"	AT3G42640.1	H(+)-ATPase 8 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.206502.1.S1_at	A	A1TS	POPTR_0006s20220	POPTR_0006s20220 (11)	scaffold_6:19266189-19266871(-) (11)	NA	P62598	Two-component response regulator ARR12	AT2G25180.1	response regulator 12 	LOC_Os02g55320.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.206503.1.S1_at	A	A1TS	POPTR_0006s20210	POPTR_0006s20210 (11)	scaffold_6:19261695-19262191(+) (11)	NA	NA	NA	AT2G24300.2	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206504.1.S1_at	A	A1TS	POPTR_0006s20170	POPTR_0006s20170 (11)	scaffold_6:19236939-19237487(-) (11)	NA	Q9SZ11	Probable glycerophosphoryl diester phosphodiesterase 2	AT5G58170.1	SHV3-like 5 	LOC_Os02g09450.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr8g146010.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.206505.1.S1_at	A	A1TS	POPTR_0006s20150	POPTR_0006s20150 (11)	scaffold_6:19215513-19215690(+) (11)	NA	Q5XJD3	Pre-mRNA 3'-end-processing factor FIP1	AT5G58040.1	homolog of yeast FIP1 [V] 	LOC_Os03g51520.2	"fip1 motif family protein, expressed"	Medtr8g137570.1	Fip1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206506.1.S1_at	A	A1TS	POPTR_0006s20120	POPTR_0006s20120 (11)	scaffold_6:19193151-19193718(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206507.1.S1_at	A	A1TS	POPTR_0006s20110	POPTR_0006s20110 (11)	scaffold_6:19187990-19188521(+) (11)	NA	NA	NA	AT1G52780.1	Protein of unknown function (DUF2921) 	LOC_Os01g08170.1	expressed protein	Medtr2g017240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206508.1.S1_s_at	A	A1TS	POPTR_0006s20100	POPTR_0006s20100 (11)	scaffold_6:19181226-19181802(+) (11)	NA	Q0VCR1	UPF0549 protein C20orf43 homolog	AT5G58020.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os06g08490.1	"X0001, putative, expressed"	Medtr8g145760.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206509.1.S1_at	A	A1TS	POPTR_0006s20090	POPTR_0006s20090 (11)	scaffold_6:19166463-19167234(-) (11)	NA	P93338	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	AT2G24270.3	aldehyde dehydrogenase 11A3 	LOC_Os08g34210.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g145740.1	"NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.206510.1.S1_s_at	A	A1TS	POPTR_0006s20060	POPTR_0006s20060 (11)	scaffold_6:19096849-19097514(+) (11)	NA	NA	NA	AT5G58005.2	"Cytochrome c oxidase, subunit Vib family protein "	LOC_Os08g34270.2	expressed protein	Medtr8g145690.1	hypothetical protein 	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
PtpAffx.206513.1.S1_s_at	A	A2TS	POPTR_0006s20000	POPTR_0006s20010 (11)//POPTR_0006s20000 (11)	scaffold_6:19018469-19018516(+) (11)//scaffold_6:19027663-19027710(+) (11)	NA	Q84WM7	Pectinesterase PPME1	AT1G69940.1	Pectin lyase-like superfamily protein 	LOC_Os05g44600.1	"pectinesterase, putative, expressed"	Medtr8g133070.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.206515.1.S1_at	A	A1TS	POPTR_0006s19990	POPTR_0006s19990 (10)	scaffold_6:19006177-19007034(+) (10)	NA	Q00IB6	RNA polymerase II C-terminal domain phosphatase-like 4	AT5G58003.1	C-terminal domain phosphatase-like 4 	LOC_Os05g32430.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g055870.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.206516.1.S1_at	A	A1TS	POPTR_0006s19980	POPTR_0006s19980 (11)	scaffold_6:18996853-18998267(+) (11)	NA	Q8VY52	"PsbP domain-containing protein 2, chloroplastic"	AT2G28605.1	Photosystem II reaction center PsbP family protein 	LOC_Os03g33230.1	"retrotransposon protein, putative, unclassified"	Medtr3g061750.1	"polyprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206517.1.S1_at	A	A1TS	POPTR_0006s19970	POPTR_0006s19970 (11)	scaffold_6:18991872-18993233(+) (11)	NA	Q56X72	Reticulon-like protein B21	AT5G58000.1	Reticulon family protein 	LOC_Os08g17870.1	"reticulon domain containing protein, putative, expressed"	Medtr4g108500.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.206519.1.S1_at	A	A1TS	POPTR_0006s19930	POPTR_0006s19930 (10)	scaffold_6:18955569-18955887(+) (11)	NA	Q6ZCX3	Formin-like protein 6	AT5G58160.1	actin binding 	LOC_Os02g55170.1	"formin-like protein 13, putative"	Medtr8g145580.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206520.1.S1_at	A	A1TS	POPTR_0006s19910	POPTR_0006s19910 (11)	scaffold_6:18923918-18924343(+) (11)	NA	NA	NA	AT2G24240.1	BTB/POZ domain with WD40/YVTN repeat-like protein 	LOC_Os04g42310.1	"B4-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed"	Medtr8g145520.1	K+ channel tetramerisation 	GO:0006813|potassium ion transport	GO:0005249|voltage-gated potassium channel activity	GO:0008076|voltage-gated potassium channel complex
PtpAffx.206521.1.S1_at	A	A1TS	POPTR_0006s19890	POPTR_0006s19890 (11)	scaffold_6:18914008-18914215(-) (11)	NA	Q9FPS4	Ubiquitin carboxyl-terminal hydrolase 23	AT5G57990.1	ubiquitin-specific protease 23 	LOC_Os06g08530.3	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g145470.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.206522.1.S1_at	A	A1TS	POPTR_0006s19890	POPTR_0006s19890 (11)	scaffold_6:18906502-18907893(-) (11)	NA	Q9FPS4	Ubiquitin carboxyl-terminal hydrolase 23	AT5G57990.1	ubiquitin-specific protease 23 	LOC_Os06g08530.3	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g145470.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.206523.1.S1_at	A	A1TS	POPTR_0006s19850	POPTR_0006s19850 (11)	scaffold_6:18855786-18856071(-) (11)	NA	P59583	Probable WRKY transcription factor 32	AT4G30935.1	WRKY DNA-binding protein 32 	LOC_Os08g17400.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr8g145380.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.206524.1.S1_s_at	A	A2TS	POPTR_0006s19800	POPTR_0006s19800 (11)//POPTR_0015s09220 (10)	scaffold_15:10478483-10478632(+) (10)//scaffold_6:18824184-18824359(+) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT3G09840.1	cell division cycle 48 	LOC_Os03g05730.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206525.1.S1_at	A	A1TS	POPTR_0006s19730	POPTR_0006s19730 (11)	scaffold_6:18760841-18762179(-) (11)	NA	Q8GXU8	"1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic"	AT4G30580.1	Phospholipid/glycerol acyltransferase family protein 	LOC_Os10g35390.1	"acyltransferase, putative, expressed"	Medtr5g046470.1	1-acyl-sn-glycerol-3-phosphate acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.206526.1.S1_at	A	A1TS	POPTR_0006s19710	POPTR_0006s19710 (11)	scaffold_6:18743479-18743810(+) (11)	NA	NA	NA	AT1G30890.2	Integral membrane HRF1 family protein 	LOC_Os04g08320.1	"YIF1B, putative, expressed"	Medtr7g020670.1	Hrf1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206527.1.S1_at	A	A1TS	POPTR_0006s19680	POPTR_0006s19680 (9)	scaffold_6:18701577-18701896(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206528.1.S1_at	A	A1TS	POPTR_0006s19610	POPTR_0006s19610 (11)	scaffold_6:18655880-18658463(+) (11)	NA	NA	NA	AT5G57880.1	multipolar spindle 1 	LOC_Os08g44180.1	expressed protein	Medtr8g145070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206529.1.S1_at	A	A1TS	POPTR_0006s19600	POPTR_0006s19600 (11)	scaffold_6:18647708-18648216(+) (11)	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.206530.1.S1_at	A	A1TS	POPTR_0006s19590	POPTR_0006s19590 (11)	scaffold_6:18630152-18630711(-) (11)	NA	NA	NA	AT2G24060.1	Translation initiation factor 3 protein 	LOC_Os02g55120.1	"translation initiation factor IF-3, putative, expressed"	Medtr8g145010.1	Initiation factor 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206530.1.S1_s_at	A	A1TS	POPTR_0006s19590	POPTR_0006s19590 (11)	scaffold_6:18630266-18630732(-) (11)	NA	NA	NA	AT2G24060.1	Translation initiation factor 3 protein 	LOC_Os02g55120.1	"translation initiation factor IF-3, putative, expressed"	Medtr8g145010.1	Initiation factor 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206531.1.S1_at	A	A1TS	POPTR_0006s19570	POPTR_0006s19570 (11)	scaffold_6:18621383-18621941(+) (11)	NA	Q9SUH6	Pentatricopeptide repeat-containing protein At4g30700	AT4G30700.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g08660.1	"pentatricopeptide, putative, expressed"	Medtr8g144980.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206532.1.S1_at	A	A1TS	POPTR_0006s19510	POPTR_0006s19510 (11)	scaffold_6:18553595-18554378(-) (11)	NA	NA	NA	AT5G57830.1	"Protein of unknown function, DUF593 "	LOC_Os08g34340.1	"DUF593 domain containing protein, expressed"	Medtr8g144910.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206533.1.S1_at	A	A1TS	POPTR_0006s19500	POPTR_0006s19500 (11)	scaffold_6:18545005-18545624(+) (11)	NA	Q9ZUI0	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os06g08710.1	"receptor-like protein kinase precursor, putative"	Medtr8g144900.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.206534.1.S1_at	A	A1TS	POPTR_0006s19490	POPTR_0006s19490 (11)	scaffold_6:18510835-18513637(-) (11)	NA	O24600	"DNA-directed RNA polymerase 3, chloroplastic"	AT2G24120.1	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.206535.1.S1_at	A	A1TS	POPTR_0006s19480	POPTR_0006s19480 (11)	scaffold_6:18507280-18507838(+) (11)	NA	Q54R82	Mitogen-activated protein kinase kinase kinase A	AT3G45670.1	Protein kinase superfamily protein 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206536.1.S1_at	A	A1TS	POPTR_0006s19450	POPTR_0006s19450 (11)	scaffold_6:18488765-18488867(-) (11)	NA	NA	NA	AT4G30790.1	"INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink). "	LOC_Os02g08350.1	expressed protein	Medtr8g144870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206536.1.S1_s_at	A	A1TS	POPTR_0006s19450	POPTR_0006s19450 (11)	scaffold_6:18489020-18489568(-) (11)	NA	NA	NA	AT4G30790.1	"INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink). "	LOC_Os02g08350.1	expressed protein	Medtr8g144870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206537.1.S1_at	A	A1TS	POPTR_0006s19440	POPTR_0006s19440 (11)	scaffold_6:18487156-18487531(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g093190.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206539.1.S1_at	A	A1TS	POPTR_0006s19390	POPTR_0006s19390 (10)	scaffold_6:18454470-18455619(-) (10)	NA	NA	NA	AT4G30845.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g11250.1	expressed protein	Medtr8g144700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206540.1.S1_at	A	A1TS	POPTR_0006s19380	POPTR_0006s19380 (10)	scaffold_6:18433156-18433444(-) (10)	POPTR_0018s11150 (8)	O15818	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206540.1.S1_x_at	A	A1TS	POPTR_0006s19380	POPTR_0006s19380 (10)	scaffold_6:18433159-18433689(-) (10)	POPTR_0018s11150 (6)	O15818	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206541.1.S1_at	A	A1MS	POPTR_0006s19360	POPTR_0006s19360 (9)	scaffold_6:18409097-18410069(-) (10)	NA	Q94AN4	AP2-like ethylene-responsive transcription factor At1g16060	AT1G16060.1	ARIA-interacting double AP2 domain protein 	LOC_Os09g25600.1	"AP2 domain containing protein, expressed"	Medtr8g144720.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.206542.1.S1_at	A	A1TS	POPTR_0006s19350	POPTR_0006s19350 (11)	scaffold_6:18404329-18404867(-) (11)	NA	Q7EZT1	NAC domain-containing protein 67	AT3G44350.1	NAC domain containing protein 61 	LOC_Os07g48450.1	"no apical meristem protein, putative, expressed"	Medtr2g110730.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.206543.1.S1_at	A	A1TS	POPTR_0006s19340	POPTR_0006s19340 (11)	scaffold_6:18397873-18398330(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G54010.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g26950.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr1g112000.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206544.1.S1_at	A	A1TS	POPTR_0006s19335	POPTR_0006s19335 (11)	scaffold_6:18390698-18391888(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206545.1.S1_at	A	A1TS	POPTR_0006s19330	POPTR_0006s19330 (11)	scaffold_6:18381716-18382263(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT2G23945.1	Eukaryotic aspartyl protease family protein 	LOC_Os08g36530.1	"aspartic proteinase nepenthesin precursor, putative"	Medtr8g039820.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206546.1.S1_at	A	A1TS	POPTR_0006s19270	POPTR_0006s19270 (11)	scaffold_6:18260156-18261155(-) (11)	NA	NA	NA	AT2G23890.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os09g25640.1	"5-nucleotidase domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206547.1.S1_at	A	A1TS	POPTR_0006s19190	POPTR_0006s19190 (11)	scaffold_6:18176927-18177890(+) (11)	NA	NA	NA	AT5G57810.1	tetraspanin15 	LOC_Os09g25760.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.206548.1.S1_at	A	A1TS	POPTR_0006s19170	POPTR_0006s19170 (11)	scaffold_6:18156414-18157199(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT4G30420.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os09g25810.2	"nodulin, putative, expressed"	Medtr2g077940.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.206549.1.S1_at	A	A1TS	POPTR_0006s19160	POPTR_0006s19160 (11)	scaffold_6:18146600-18147436(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT4G30420.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os09g25810.2	"nodulin, putative, expressed"	Medtr8g005860.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.206550.1.S1_at	A	A1TS	POPTR_0006s19150	POPTR_0006s19150 (11)	scaffold_6:18133125-18133898(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT4G30420.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os09g25810.2	"nodulin, putative, expressed"	Medtr8g005860.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.206551.1.S1_at	A	A1TS	POPTR_0006s19140	POPTR_0006s19140 (11)	scaffold_6:18075033-18076074(-) (11)	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os09g25850.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.206552.1.S1_s_at	A	A1TS	POPTR_0006s19100	POPTR_0006s19100 (11)	scaffold_6:17976346-17976912(+) (11)	NA	Q6CAB8	GPI mannosyltransferase 3	AT5G14850.2	Alg9-like mannosyltransferase family 	LOC_Os01g39810.2	"Alg9-like mannosyltransferase protein, putative, expressed"	Medtr8g127680.1	Alg9-like mannosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206553.1.S1_s_at	A	A1TS	POPTR_0006s19090	POPTR_0006s19090 (10)	scaffold_6:17965659-17966179(-) (11)	NA	Q9FFB8	Cation/H(+) antiporter 3	AT5G22900.1	cation/H+ exchanger 3 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr7g045560.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.206554.1.S1_at	A	A1TS	POPTR_0006s19080	POPTR_0006s19080 (11)	scaffold_6:17946027-17946607(+) (11)	NA	Q940Q4	RING-H2 finger protein ATL13	AT4G30400.1	RING/U-box superfamily protein 	LOC_Os08g34550.1	"RING-H2 finger protein, putative, expressed"	Medtr8g127740.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206555.1.S1_s_at	A	A1TS	POPTR_0006s19060	POPTR_0006s19060 (11)	scaffold_6:17889957-17891889(-) (11)	NA	NA	NA	AT4G28030.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os08g16010.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr8g127700.1	"GCN5-related N-acetyltransferase, putative "	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.206556.1.S1_at	A	A1TS	POPTR_0006s19050	POPTR_0006s19050 (11)	scaffold_6:17887629-17888165(+) (11)	NA	Q9FYC1	Cation/H(+) antiporter 4	AT3G44900.1	cation/H+ exchanger 4 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr7g043380.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.206557.1.S1_at	A	A1TS	POPTR_0006s19040	POPTR_0006s19040 (11)	scaffold_6:17880395-17881077(+) (11)	NA	Q9M0C2	Putative EG45-like domain containing protein 1	AT4G30380.1	Barwin-related endoglucanase 	LOC_Os09g29690.1	"beta-expansin precursor, putative, expressed"	Medtr3g136740.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206559.1.S1_at	A	A1TS	POPTR_0006s19010	POPTR_0006s19010 (11)	scaffold_6:17848769-17850814(-) (11)	NA	NA	NA	AT4G28025.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g39730.2	expressed protein	Medtr8g127870.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20656.1.A1_at	A	A2TS	POPTR_0323s00200	POPTR_0323s00200 (11)//POPTR_0001s32720 (10)	scaffold_1:31000949-31001273(+) (10)//scaffold_323:1760-2819(-) (11)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT4G13850.3	glycine-rich RNA-binding protein 2 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g105170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.206561.1.S1_at	A	A1TS	POPTR_0006s18990	POPTR_0006s18990 (10)	scaffold_6:17822856-17823317(-) (11)	NA	Q8L7Z0	Probable cyclic nucleotide-gated ion channel 17	AT4G30360.1	cyclic nucleotide-gated channel 17 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206562.1.S1_at	A	A1MS	POPTR_0006s18960	POPTR_0006s18960 (11)	scaffold_6:17747997-17748380(+) (11)	NA	P53533	Chaperone protein ClpB 1	AT5G57710.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g15230.1	"heat shock protein-related, putative, expressed"	Medtr8g127930.1	"ATP binding, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206565.1.S1_at	A	A1TS	POPTR_0006s18930	POPTR_0006s18930 (11)	scaffold_6:17672556-17673707(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	AC235006_4.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Helix-loop-helix DNA-binding AC235006.1 10927-5775 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206567.1.S1_at	A	A2TS	POPTR_1173s00200	POPTR_1173s00200 (11)//POPTR_0006s22140 (10)	scaffold_1173:3112-3634(-) (11)//scaffold_6:21198902-21199424(+) (10)	NA	NA	NA	AT2G36000.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g24590.1	"mTERF domain containing protein, expressed"	AC233682_44.1	Mitochodrial transcription termination factor-related AC233682.2 160878-163584 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206568.1.S1_at	A	A1TS	POPTR_0006s22170	POPTR_0006s22170 (11)	scaffold_6:21215943-21217154(-) (11)	NA	Q8GXE9	HVA22-like protein j	AT2G36020.1	HVA22-like protein J 	LOC_Os02g02920.1	"HVA22, putative, expressed"	Medtr3g156300.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206569.1.S1_at	A	A1TS	POPTR_0006s22180	POPTR_0006s22180 (11)	scaffold_6:21224153-21224480(+) (11)	NA	NA	NA	AT2G36026.1	Ovate family protein 	LOC_Os10g38880.1	"DUF623 domain containing protein, expressed"	AC146630_7.1	Uncharacterized plant-specific domain AC146630.25 27427-28667 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206570.1.S1_at	A	A1TS	POPTR_0006s22190	POPTR_0006s22190 (11)	scaffold_6:21235207-21235750(-) (11)	NA	NA	NA	AT5G04820.1	ovate family protein 13 	LOC_Os01g64410.1	"ATOFP18/OFP18, putative, expressed"	AC146630_8.1	Uncharacterized plant-specific domain AC146630.25 44746-43647 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206571.1.S1_at	A	A1TS	POPTR_0006s22220	POPTR_0006s22220 (11)	scaffold_6:21268205-21268526(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g33320.3	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.206572.1.S1_at	A	A1TS	POPTR_0006s22270	POPTR_0006s22270 (9)	scaffold_6:21308841-21309432(-) (11)	NA	Q7FAE1	Momilactone A synthase	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.206573.1.S1_at	A	A1TS	POPTR_0006s22280	POPTR_0006s22280 (9)	scaffold_6:21311625-21311995(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206574.1.S1_at	A	A1TS	POPTR_0006s22310	POPTR_0006s22310 (11)	scaffold_6:21323247-21323763(-) (11)	NA	Q7FAE1	Momilactone A synthase	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.206575.1.S1_at	A	A1TS	POPTR_0006s22320	POPTR_0006s22320 (11)	scaffold_6:21340641-21341127(-) (11)	NA	Q7FAE1	Momilactone A synthase	AT1G52340.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10000.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.206580.1.S1_at	A	A1TS	POPTR_0006s22380	POPTR_0006s22380 (11)	scaffold_6:21418481-21418883(+) (11)	NA	P54968	IAA-amino acid hydrolase ILR1	AT3G02875.1	Peptidase M20/M25/M40 family protein 	LOC_Os07g14590.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.206581.1.S1_at	A	A1TS	POPTR_0006s22390	POPTR_0006s22390 (11)	scaffold_6:21421947-21422001(+) (11)	NA	P54968	IAA-amino acid hydrolase ILR1	AT3G02875.1	Peptidase M20/M25/M40 family protein 	LOC_Os07g14590.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.206582.1.S1_at	A	A1TS	POPTR_0006s22400	POPTR_0006s22400 (11)	scaffold_6:21425974-21426430(-) (11)	NA	Q9FHR3	Putative pentatricopeptide repeat-containing protein At5g37570	AT5G37570.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os04g33840.1	"pentatricopeptide, putative"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206583.1.S1_at	A	A1TS	POPTR_0006s22450	POPTR_0006s22450 (11)	scaffold_6:21469502-21469655(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206584.1.S1_at	A	A1TS	POPTR_0006s22460	POPTR_0006s22460 (11)	scaffold_6:21471888-21472243(+) (11)	NA	Q9FNI3	B3 domain-containing protein At5g06250	AT5G06250.2	AP2/B3-like transcriptional factor family protein 	LOC_Os11g05740.1	"B3 DNA binding domain containing protein, expressed"	AC233685_81.1	Transcriptional factor B3 AC233685.2 344120-341990 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.206584.1.S1_s_at	A	A2TS	POPTR_0006s22460	POPTR_0006s22460 (11)//POPTR_0016s07540 (10)	scaffold_16:5434579-5434881(+) (11)//scaffold_6:21471910-21472212(+) (11)	NA	Q9FNI3	B3 domain-containing protein At5g06250	AT5G06250.2	AP2/B3-like transcriptional factor family protein 	LOC_Os11g05740.1	"B3 DNA binding domain containing protein, expressed"	AC233685_81.1	Transcriptional factor B3 AC233685.2 344120-341990 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.206585.1.S1_at	A	A1TS	POPTR_0006s22470	POPTR_0006s22470 (10)	scaffold_6:21479263-21479409(-) (11)	NA	NA	NA	AT5G06240.1	embryo defective 2735 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206586.1.S1_at	A	A1TS	POPTR_0006s22480	POPTR_0006s22480 (11)	scaffold_6:21483990-21488019(-) (11)	NA	NA	NA	AT3G11560.4	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206587.1.S1_at	A	A2TS	POPTR_0006s22500	POPTR_0644s00200 (11)//POPTR_0006s22500 (11)	scaffold_6:21510607-21510925(-) (11)//scaffold_644:207-525(+) (11)	NA	B9SX12	UPF0497 membrane protein 7	AT3G11550.1	Uncharacterised protein family (UPF0497) 	LOC_Os06g12500.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206588.1.S1_at	A	A1TS	POPTR_0006s22510	POPTR_0006s22510 (11)	scaffold_6:21512226-21513002(-) (11)	NA	B9HBX2	UPF0497 membrane protein 8	AT5G06200.1	Uncharacterised protein family (UPF0497) 	LOC_Os06g12500.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206589.1.S1_at	A	A1TS	POPTR_0006s22530	POPTR_0006s22530 (11)	scaffold_6:21528508-21529972(+) (11)	NA	O82039	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	AT3G11540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44510.1	"UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206590.1.S1_at	A	A1TS	POPTR_0006s22580	POPTR_0006s22580 (11)	scaffold_6:21555116-21556092(-) (11)	NA	Q9FMR3	NAC domain-containing protein 90	AT5G22380.1	NAC domain containing protein 90 	LOC_Os11g05614.1	"no apical meristem protein, putative, expressed"	Medtr2g107600.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.206591.1.S1_at	A	A1TS	POPTR_0006s22720	POPTR_0006s22720 (10)	scaffold_6:21658173-21658538(-) (10)	NA	O23826	125 kDa kinesin-related protein	AT2G36200.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr7g127790.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.206591.1.S1_s_at	A	A1TS	POPTR_0006s22720	POPTR_0006s22720 (11)	scaffold_6:21658298-21659394(-) (11)	NA	O23826	125 kDa kinesin-related protein	AT2G36200.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr7g127790.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.206592.1.S1_at	A	A1TS	POPTR_0006s22760	POPTR_0006s22760 (9)	scaffold_6:21677035-21677367(-) (11)	NA	NA	NA	AT2G36210.1	SAUR-like auxin-responsive protein family  	LOC_Os06g48860.1	OsSAUR28 - Auxin-responsive SAUR gene family member	Medtr7g127720.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206593.1.S1_at	A	A1TS	POPTR_0006s22790	POPTR_0006s22790 (10)	scaffold_6:21696630-21699026(+) (10)	NA	P39135	4'-phosphopantetheinyl transferase sfp	AT3G11470.1	4'-phosphopantetheinyl transferase superfamily 	LOC_Os08g14490.1	"dehydrogenase-phosphopantetheinyltransferase, putative, expressed"	Medtr4g144650.1	4-phosphopantetheinyl transferase 	GO:0009059|macromolecule biosynthetic process	GO:0008897|holo-[acyl-carrier-protein] synthase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.206594.1.S1_at	A	A1TS	POPTR_0006s22800	POPTR_0006s22800 (9)	scaffold_6:21700527-21701065(-) (11)	NA	Q9CAY1	Putative pentatricopeptide repeat-containing protein At3g11460	AT3G11460.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g60430.1	"pentatricopeptide repeat-containing protein, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206595.1.S1_at	A	A1TS	POPTR_0006s22840	POPTR_0006s22840 (11)	scaffold_6:21726097-21726444(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206596.1.S1_at	A	A1TS	POPTR_0006s22900	POPTR_0006s22900 (11)	scaffold_6:21771767-21772259(+) (11)	NA	Q55FP0	Putative phagocytic receptor 1a	AT5G35160.2	Endomembrane protein 70 protein family 	LOC_Os02g55440.2	"transmembrane 9 superfamily member, putative, expressed"	Medtr5g106320.1	Nonaspanin (TM9SF) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206598.1.S1_at	A	A1TS	POPTR_0006s22930	POPTR_0006s22930 (11)	scaffold_6:21795211-21795573(+) (11)	NA	NA	NA	AT3G52710.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g127500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206599.1.S1_at	A	A1TS	POPTR_0006s22940	POPTR_0006s22940 (11)	scaffold_6:21797771-21799083(-) (11)	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT3G52720.1	alpha carbonic anhydrase 1 	LOC_Os02g33030.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2066.1.S1_at	A	A1TS	POPTR_0015s08870	POPTR_0015s08870 (11)	scaffold_15:10245215-10245467(+) (11)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206600.1.S1_at	A	A1TS	POPTR_0006s22960	POPTR_0006s22960 (10)	scaffold_6:21816716-21817219(+) (11)	NA	NA	NA	AT3G10120.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03890.1); Has 57 Blast hits to 57 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g127440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206601.1.S1_at	A	A1TS	POPTR_0006s22970	POPTR_0006s22970 (11)	scaffold_6:21820525-21821006(+) (11)	NA	Q9FIH2	"Pentatricopeptide repeat-containing protein At5g42450, mitochondrial"	AT5G42450.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g62220.1	"pentatricopeptide, putative"	Medtr3g143210.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206603.1.S1_at	A	A1TS	POPTR_0006s23020	POPTR_0006s23020 (11)	scaffold_6:21866585-21866968(+) (11)	NA	NA	NA	AT3G53540.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). 	LOC_Os03g17210.1	expressed protein	Medtr5g045260.1	"Rad51, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206604.1.S1_at	A	A1TS	POPTR_0006s23030	POPTR_0006s23030 (10)	scaffold_6:21872846-21873396(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206605.1.S1_at	A	A1TS	POPTR_0006s23080	POPTR_0006s23080 (11)	scaffold_6:21937993-21938562(+) (11)	NA	O54922	Exocyst complex component 7	AT3G09520.1	exocyst subunit exo70 family protein H4 	LOC_Os08g35470.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr4g079170.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.206606.1.S1_at	A	A1TS	POPTR_0006s23100	POPTR_0006s23100 (10)	scaffold_6:21954592-21954948(+) (10)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G12360.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206607.1.S1_at	A	A1TS	POPTR_0006s23120	POPTR_0006s23120 (11)	scaffold_6:21967959-21968515(-) (11)	NA	NA	NA	AT2G39370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os01g61980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206608.1.S1_at	A	A1TS	POPTR_0006s23130	POPTR_0006s23130 (11)	scaffold_6:21977161-21977573(-) (11)	NA	Q92539	Phosphatidate phosphatase LPIN2	AT3G09560.3	Lipin family protein 	LOC_Os05g38710.1	"lipin, N-terminal conserved region family protein, expressed"	Medtr7g120540.1	"Lipin, N-terminal conserved region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206608.1.S1_x_at	A	A1TS	POPTR_0006s23130	POPTR_0006s23130 (11)	scaffold_6:21976439-21977589(-) (11)	NA	Q92539	Phosphatidate phosphatase LPIN2	AT3G09560.3	Lipin family protein 	LOC_Os05g38710.1	"lipin, N-terminal conserved region family protein, expressed"	Medtr7g120540.1	"Lipin, N-terminal conserved region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206610.1.S1_at	A	A1TS	POPTR_0006s23210	POPTR_0006s23210 (11)	scaffold_6:22017344-22017723(+) (11)	NA	Q40374	Pathogenesis-related protein PR-1	AT3G09590.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os05g51680.2	"SCP-like extracellular protein, expressed"	Medtr8g128380.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206611.1.S1_at	A	A1TS	POPTR_0006s23220	POPTR_0006s23220 (11)	scaffold_6:22018813-22019460(-) (11)	NA	Q9ZUT3	Protein ALUMINUM SENSITIVE 3	AT2G37330.1	aluminum sensitive 3 	LOC_Os05g02750.1	"ABC transporter, membrane-spanning/permease subunit, putative, expressed"	AC235022_6.1	Conserved hypothetical protein 245 AC235022.1 27547-25968 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206612.1.S1_at	A	A1TS	POPTR_0006s23260	POPTR_0006s23260 (11)	scaffold_6:22033125-22033790(+) (11)	NA	Q9ZUT5	Pentatricopeptide repeat-containing protein At2g37310	AT2G37310.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g17510.1	"pentatricopeptide, putative, expressed"	Medtr7g083950.1	"Tetratricopeptide-like helical, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206613.1.S1_at	A	A1TS	POPTR_0006s23280	POPTR_0006s23280 (11)	scaffold_6:22042594-22043067(+) (11)	NA	NA	NA	AT2G37300.1	unknown protein; Has 93 Blast hits to 62 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 19; Plants - 25; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). 	LOC_Os03g17500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206614.1.S1_at	A	A1TS	POPTR_0006s23290	POPTR_0006s23290 (10)	scaffold_6:22053036-22053090(+) (10)	NA	O76094	Signal recognition particle 72 kDa protein	AT1G67680.1	SRP72 RNA-binding domain 	LOC_Os01g66560.1	"signal recognition particle 72 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
PtpAffx.206615.1.S1_at	A	A1TS	POPTR_0006s23330	POPTR_0006s23330 (11)	scaffold_6:22073928-22074436(-) (11)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT5G20870.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g27980.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.206616.1.S1_at	A	A1TS	POPTR_0006s23350	POPTR_0006s23350 (10)	scaffold_6:22093634-22094166(-) (10)	NA	Q9Y6D6	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	AT3G43300.1	HOPM interactor 7 	LOC_Os07g37750.1	"ATMIN7, putative, expressed"	Medtr8g133430.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.206616.1.S1_s_at	A	A1TS	POPTR_0006s23350	POPTR_0006s23350 (11)	scaffold_6:22094160-22095261(-) (11)	NA	Q9Y6D6	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	AT3G43300.1	HOPM interactor 7 	LOC_Os07g37750.1	"ATMIN7, putative, expressed"	Medtr8g133430.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.206619.1.S1_at	A	A1TS	POPTR_0006s23430	POPTR_0006s23430 (11)	scaffold_6:22150776-22153741(+) (11)	NA	NA	NA	AT3G43540.1	Protein of unknown function (DUF1350) 	LOC_Os09g26580.1	expressed protein	Medtr8g083960.1	Protein of unknown function DUF1350 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206620.1.S1_at	A	A1TS	POPTR_0006s23440	POPTR_0006s23440 (11)	scaffold_6:22154636-22155025(-) (11)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT3G05020.1	acyl carrier protein 1 	LOC_Os12g34890.1	"acyl carrier protein, putative, expressed"	Medtr4g152090.1	Acyl carrier protein (ACP) 	NA	GO:0048037|cofactor binding	NA
PtpAffx.206621.1.S1_at	A	A1TS	POPTR_0006s23450	POPTR_0006s23450 (11)	scaffold_6:22168212-22169367(+) (11)	NA	NA	NA	AT5G21280.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr3g138840.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206622.1.S1_at	A	A1TS	POPTR_0006s23470	POPTR_0006s23470 (11)	scaffold_6:22185918-22186441(-) (11)	NA	NA	NA	AT5G21970.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os11g34160.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr3g138900.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206623.1.S1_at	A	A1TS	POPTR_0006s23490	POPTR_0006s23490 (11)	scaffold_6:22200733-22202968(-) (11)	NA	Q5QJC4	DNA cross-link repair 1A protein	AT2G45700.1	sterile alpha motif (SAM) domain-containing protein 	LOC_Os09g26760.1	DNA repair metallo-beta-lactamase family protein	Medtr3g138940.1	Sterile alpha motif homology; DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206624.1.S1_s_at	A	A1TS	POPTR_0006s23500	POPTR_0006s23500 (11)	scaffold_6:22211738-22215434(+) (11)	NA	Q67ZE1	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2	AT2G26260.1	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 	LOC_Os03g29170.1	"sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0044237|cellular metabolic process||GO:0006694|steroid biosynthetic process	GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity||GO:0050662|coenzyme binding	GO:0005783|endoplasmic reticulum
PtpAffx.206625.1.S1_at	A	A1TS	POPTR_0006s23510	POPTR_0006s23510 (11)	scaffold_6:22227735-22229640(+) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT2G22620.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.2	"rhamnogalacturonate lyase, putative, expressed"	Medtr8g079160.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206626.1.S1_at	A	A1TS	POPTR_0006s23510	POPTR_0006s23510 (11)	scaffold_6:22231430-22232278(+) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT2G22620.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.2	"rhamnogalacturonate lyase, putative, expressed"	Medtr8g079160.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206627.1.S1_at	A	A1TS	POPTR_0006s23540	POPTR_0006s23540 (10)	scaffold_6:22251879-22252668(+) (11)	NA	NA	NA	AT2G26270.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g26870.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr3g139010.1	BRCT 	NA	NA	GO:0005622|intracellular
PtpAffx.206630.1.S1_at	A	A1TS	POPTR_0006s23560	POPTR_0006s23560 (11)	scaffold_6:22274129-22274697(+) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G08139.1	RING/U-box superfamily protein 	LOC_Os05g40980.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g100800.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206631.1.S1_at	A	A1TS	POPTR_0006s23590	POPTR_0006s23590 (11)	scaffold_6:22292751-22293579(-) (11)	NA	Q9CAH1	Putative receptor-like protein kinase At1g72540	AT2G26290.1	root-specific kinase 1 	LOC_Os10g25550.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr1g019270.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206632.1.S1_at	A	A1TS	POPTR_0006s23620	POPTR_0006s23620 (11)	scaffold_6:22334837-22337547(+) (11)	NA	NA	NA	AT2G26310.1	Chalcone-flavanone isomerase family protein 	LOC_Os02g53810.1	expressed protein	Medtr1g019800.1	hypothetical protein 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
PtpAffx.206633.1.S1_at	A	A1TS	POPTR_0006s23630	POPTR_0006s23630 (11)	scaffold_6:22345069-22345615(+) (11)	NA	Q8VYG3	Endoglucanase 16	AT3G43860.1	glycosyl hydrolase 9A4 	LOC_Os02g53820.2	"endoglucanase, putative, expressed"	Medtr3g139180.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.206634.1.S1_at	A	A1TS	POPTR_0006s23660	POPTR_0006s23660 (11)	scaffold_6:22369952-22371726(-) (11)	NA	P54697	Myosin-J heavy chain	AT4G33200.1	"myosin, putative "	LOC_Os06g29350.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.206635.1.S1_at	A	A1TS	POPTR_0006s23660	POPTR_0006s23660 (10)	scaffold_6:22380046-22382500(-) (11)	NA	P54697	Myosin-J heavy chain	AT4G33200.1	"myosin, putative "	LOC_Os06g29350.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.206636.1.S1_at	A	A1MS	POPTR_0006s23680	POPTR_0006s23680 (10)	scaffold_6:22392835-22394434(-) (10)	NA	Q42371	LRR receptor-like serine/threonine-protein kinase ERECTA	AT2G26330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os06g03970.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr1g019670.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.206638.1.S1_at	A	A1TS	POPTR_0006s23710	POPTR_0006s23710 (11)	scaffold_6:22429314-22429622(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g07980.1	expressed protein	Medtr1g019590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206639.1.S1_at	A	A1TS	POPTR_0006s23720	POPTR_0006s23720 (11)	scaffold_6:22435254-22435744(-) (11)	NA	Q8NEE6	F-box/LRR-repeat protein 13	AT2G06040.1	"CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). "	LOC_Os08g35700.1	"Leucine Rich Repeat family protein, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.206641.1.S1_at	A	A1TS	POPTR_0006s23800	POPTR_0006s23800 (11)	scaffold_6:22530152-22530560(+) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os02g01380.1	expressed protein	Medtr1g125280.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206643.1.S1_at	A	A1TS	POPTR_0006s23850	POPTR_0006s23850 (11)	scaffold_6:22587401-22587984(-) (11)	NA	NA	NA	AT5G21430.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g31460.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g139340.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.206644.1.S1_at	A	A1TS	POPTR_0006s23860	POPTR_0006s23860 (11)	scaffold_6:22592255-22592321(+) (11)	NA	Q9SYU4	Peroxisome biogenesis factor 10	AT2G26350.1	peroxin 10 	LOC_Os07g41800.1	"peroxisome assembly protein, putative, expressed"	Medtr1g019510.1	"Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
PtpAffx.206644.1.S1_s_at	A	A1TS	POPTR_0006s23860	POPTR_0006s23860 (11)	scaffold_6:22590703-22592143(+) (11)	NA	Q9SYU4	Peroxisome biogenesis factor 10	AT2G26350.1	peroxin 10 	LOC_Os07g41800.1	"peroxisome assembly protein, putative, expressed"	Medtr1g019510.1	"Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
PtpAffx.206645.1.S1_at	A	A1TS	POPTR_0006s23900	POPTR_0006s23900 (10)	scaffold_6:22616131-22616669(-) (10)	NA	Q9LYG9	Uncharacterized protein At5g12080	AT5G12080.3	mechanosensitive channel of small conductance-like 10 	LOC_Os06g10410.1	"uncharacterized mscS family protein, putative, expressed"	Medtr3g139330.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206646.1.S1_at	A	A1TS	POPTR_0006s23920	POPTR_0006s23920 (11)	scaffold_6:22632608-22633325(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT4G35780.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g27150.1	protein kinase domain containing protein	Medtr3g139430.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206647.1.S1_at	A	A1MS	POPTR_0006s23960	POPTR_0006s23960 (10)	scaffold_6:22684672-22685619(+) (10)	NA	NA	NA	AT1G20640.2	Plant regulator RWP-RK family protein 	LOC_Os01g37100.1	"RWP-RK domain-containing protein, putative, expressed"	Medtr3g139490.1	Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206648.1.S1_at	A	A1TS	POPTR_0006s23970	POPTR_0006s23970 (11)	scaffold_6:22690521-22691660(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206649.1.S1_at	A	A1TS	POPTR_0006s23980	POPTR_0006s23980 (11)	scaffold_6:22695800-22696319(+) (11)	NA	Q0WVK7	"Pentatricopeptide repeat-containing protein At1g05665, mitochondrial"	AT1G05670.2	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os02g35750.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr7g041080.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206650.1.S1_at	A	A1TS	POPTR_0006s24010	POPTR_0006s24010 (11)	scaffold_6:22717651-22718238(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT5G51160.1	Ankyrin repeat family protein 	LOC_Os11g08020.1	"ankyrin repeat family protein, putative, expressed"	Medtr8g087750.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206651.1.S1_at	A	A1TS	POPTR_0006s24020	POPTR_0006s24020 (11)	scaffold_6:22719919-22720490(-) (11)	NA	Q9ZU96	Ankyrin repeat-containing protein At2g01680	AT5G51160.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr8g087750.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206652.1.S1_at	A	A1TS	POPTR_0006s24060	POPTR_0006s24060 (11)	scaffold_6:22748187-22748700(-) (11)	NA	NA	NA	AT5G26160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20610.1); Has 197 Blast hits to 158 proteins in 44 species: Archae - 0; Bacteria - 14; Metazoa - 28; Fungi - 15; Plants - 117; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os01g51640.1	expressed protein	Medtr1g019330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206653.1.S1_at	A	A1TS	POPTR_0006s24060	POPTR_0006s24060 (11)	scaffold_6:22750030-22750410(-) (11)	NA	NA	NA	AT5G26160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20610.1); Has 197 Blast hits to 158 proteins in 44 species: Archae - 0; Bacteria - 14; Metazoa - 28; Fungi - 15; Plants - 117; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os01g51640.1	expressed protein	Medtr1g019330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206654.1.S1_at	A	A1MS	POPTR_0006s24070	POPTR_0006s24070 (9)	scaffold_6:22754333-22755547(+) (10)	NA	NA	NA	AT4G33110.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g37610.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr3g139610.2	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.206655.1.S1_at	A	A1TS	POPTR_0006s24080	POPTR_0006s24080 (11)	scaffold_6:22757252-22757712(-) (11)	NA	Q9SMZ9	Uncharacterized protein At4g33100	AT4G33100.1	CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/apoptosis (InterPro:IPR007918); Has 214 Blast hits to 214 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os09g19750.2	expressed protein	Medtr3g139620.1	Protein of unknown function UPF0203 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206656.1.S1_s_at	A	A1TS	POPTR_0006s24090	POPTR_0006s24090 (11)	scaffold_6:22775500-22776462(+) (11)	NA	Q11011	Puromycin-sensitive aminopeptidase	AT4G33090.1	aminopeptidase M1 	LOC_Os02g12650.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.206657.1.S1_at	A	A1TS	POPTR_0006s24130	POPTR_0006s24130 (11)	scaffold_6:22809709-22810356(+) (11)	NA	NA	NA	AT1G76940.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g05530.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g139670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.206658.1.S1_at	A	A1TS	POPTR_0006s24140	POPTR_0006s24140 (11)	scaffold_6:22811924-22812591(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206659.1.S1_at	A	A1TS	POPTR_0006s24150	POPTR_0006s24150 (11)	scaffold_6:22816511-22817106(-) (11)	NA	Q5NVK5	Geranylgeranyl transferase type-2 subunit alpha	AT4G24490.2	RAB geranylgeranyl transferase alpha subunit 1 	LOC_Os06g46380.1	"rab geranylgeranyl transferase like protein, putative, expressed"	Medtr3g149650.1	Protein prenyltransferase 	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity||GO:0005515|protein binding	NA
PtpAffx.206660.1.S1_at	A	A1TS	POPTR_0006s24160	POPTR_0006s24160 (11)	scaffold_6:22822733-22823297(-) (11)	NA	Q96MB7	Putative nuclease HARBI1	AT5G12010.1	"unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os01g40070.1	expressed protein	Medtr1g019300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206661.1.S1_at	A	A1TS	POPTR_0006s24170	POPTR_0006s24170 (11)	scaffold_6:22829316-22830550(-) (11)	NA	NA	NA	AT4G33060.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g40050.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.206663.1.S1_at	A	A1TS	POPTR_0006s24180	POPTR_0006s24180 (11)	scaffold_6:22838487-22839053(+) (11)	NA	Q9FKG6	U-box domain-containing protein 52	AT5G12000.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os02g12660.1	"protein kinase domain containing protein, putative, expressed"	Medtr3g139680.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206664.1.S1_at	A	A1TS	POPTR_0006s24210	POPTR_0006s24210 (11)	scaffold_6:22860116-22860563(+) (11)	NA	Q6AXU8	Methyltransferase-like protein 6	AT2G26200.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g04940.1	"methyltransferase, putative, expressed"	Medtr1g019870.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.206665.1.S1_at	A	A1TS	POPTR_0006s24240	POPTR_0006s24240 (11)	scaffold_6:22890158-22890483(+) (11)	NA	NA	NA	AT5G11970.1	Protein of unknown function (DUF3511) 	LOC_Os01g38660.1	expressed protein	Medtr3g139700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206666.1.S1_at	A	A1TS	POPTR_0006s24250	POPTR_0006s24250 (11)	scaffold_6:22897673-22899561(+) (11)	NA	NA	NA	AT5G11960.1	Protein of unknown function (DUF803) 	LOC_Os01g51190.1	expressed protein	Medtr1g019910.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.206667.1.S1_at	A	A1TS	POPTR_0006s24260	POPTR_0006s24260 (11)	scaffold_6:22903839-22905553(-) (11)	NA	Q84MC2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8	AT5G11950.2	Putative lysine decarboxylase family protein 	LOC_Os01g51210.1	"uncharacterized protein PA4923, putative, expressed"	Medtr1g019920.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206668.1.S1_at	A	A1TS	POPTR_0006s24280	POPTR_0006s24280 (10)	scaffold_6:22920326-22924192(+) (10)	NA	P16260	Graves disease carrier protein	AT1G14560.1	Mitochondrial substrate carrier family protein 	LOC_Os01g51250.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g139730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206669.1.S1_s_at	A	A1TS	POPTR_0006s24310	POPTR_0006s24310 (11)	scaffold_6:22953370-22953729(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT2G26180.1	IQ-domain 6 	LOC_Os01g09790.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g139750.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206670.1.S1_at	A	A1TS	POPTR_0006s24360	POPTR_0006s24360 (11)	scaffold_6:22983785-22984331(-) (11)	NA	O97470	Mitochondrial substrate carrier family protein ancA	AT5G56450.1	Mitochondrial substrate carrier family protein 	LOC_Os05g46220.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g139860.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206671.1.S1_at	A	A1TS	POPTR_0006s24370	POPTR_0006s24370 (11)	scaffold_6:22989622-22990927(-) (11)	NA	Q6YYC0	Zinc finger CCCH domain-containing protein 55	AT3G26850.2	histone-lysine N-methyltransferases 	LOC_Os03g11580.1	expressed protein	Medtr2g071300.1	"Zinc finger, CCCH-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206672.1.S1_at	A	A1TS	POPTR_0006s24380	POPTR_0006s24380 (11)	scaffold_6:22999447-23002212(-) (11)	NA	P53259	"Rhomboid protein 1, mitochondrial"	AT1G18600.1	RHOMBOID-like protein 12 	LOC_Os01g55740.1	"OsRhmbd4 - Putative Rhomboid homologue, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.206673.1.S1_at	A	A1TS	POPTR_0006s24390	POPTR_0006s24390 (11)	scaffold_6:23009499-23010341(-) (11)	NA	Q43866	"Beta-fructofuranosidase, insoluble isoenzyme CWINV1"	AT3G13790.1	Glycosyl hydrolases family 32 protein 	LOC_Os01g73580.1	"glycosyl hydrolases, putative, expressed"	Medtr2g121130.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206674.1.S1_s_at	A	A1TS	POPTR_0006s24420	POPTR_0006s24420 (11)	scaffold_6:23039439-23039925(+) (11)	NA	O80983	"ATP-dependent zinc metalloprotease FTSH 4, mitochondrial"	AT2G26140.1	FTSH protease 4 	LOC_Os01g39260.1	"OsFtsH5  FtsH protease, homologue of AtFtsH4, expressed"	Medtr3g139920.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.206675.1.S1_at	A	A1TS	POPTR_0006s24430	POPTR_0006s24430 (11)	scaffold_6:23045908-23047962(+) (11)	NA	Q07379	Putative uncharacterized protein YDL057W	AT5G11910.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g46210.1	"OsPOP10 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr1g020120.1	"Esterase-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206676.1.S1_at	A	A1TS	POPTR_0006s24450	POPTR_0006s24450 (11)	scaffold_6:23055171-23057671(-) (11)	NA	O42929	Translation machinery-associated protein 22	AT5G11900.1	Translation initiation factor SUI1 family protein 	LOC_Os01g09890.1	"translation initiation factor SUI1, putative, expressed"	Medtr7g024960.1	Density-regulated protein DRP1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.206678.1.S1_at	A	A1TS	POPTR_0006s24470	POPTR_0006s24470 (11)	scaffold_6:23067948-23068242(+) (11)	NA	Q9SHE9	LOB domain-containing protein 4	AT1G31320.1	LOB domain-containing protein 4 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr4g114920.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206679.1.S1_at	A	A1TS	POPTR_0006s24480	POPTR_0006s24480 (11)	scaffold_6:23072059-23072209(-) (11)	NA	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400	AT1G68400.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os01g04230.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g140560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.206681.1.S1_at	A	A1TS	POPTR_0006s24550	POPTR_0006s24550 (11)	scaffold_6:23134758-23135183(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206683.1.S1_at	A	A1TS	POPTR_0006s24590	POPTR_0006s24590 (11)	scaffold_6:23189687-23192348(+) (11)	NA	P48276	Uncharacterized protein ycf36	AT5G11840.1	Protein of unknown function (DUF1230) 	LOC_Os05g46250.1	"DUF1230 domain containing protein, expressed"	Medtr1g020520.1	Protein of unknown function DUF1230 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206684.1.S1_at	A	A1TS	POPTR_0006s24630	POPTR_0006s24630 (11)	scaffold_6:23212414-23212890(-) (11)	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.2	calcineurin B-like protein 10 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr1g020570.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206684.1.S1_s_at	A	A1TS	POPTR_0006s24630	POPTR_0006s24630 (11)	scaffold_6:23212128-23212779(-) (11)	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.2	calcineurin B-like protein 10 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr1g020570.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206685.1.S1_at	A	A1TS	POPTR_0006s24640	POPTR_0006s24640 (11)	scaffold_6:23225019-23229423(+) (11)	NA	Q944K3	Histone deacetylase 2	AT5G26040.2	histone deacetylase 2 	LOC_Os06g37420.1	"histone deacetylase, putative, expressed"	Medtr1g020580.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206686.1.S1_at	A	A1TS	POPTR_0006s24650	POPTR_0006s24650 (11)	scaffold_6:23236166-23238454(+) (11)	NA	B5X0N6	K(+) efflux antiporter 6	AT5G11800.1	K+ efflux antiporter 6 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr4g160810.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.206687.1.S1_at	A	A1TS	POPTR_0006s24660	POPTR_0006s24660 (11)	scaffold_6:23244213-23245302(+) (11)	NA	NA	NA	AT5G56840.1	myb-like transcription factor family protein 	LOC_Os01g41900.1	"Myb transcription factor, putative, expressed"	Medtr4g160800.1	"Interleukin-6/G-CSF/MGF; Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.206688.1.S1_at	A	A1TS	POPTR_0006s24670	POPTR_0006s24670 (11)	scaffold_6:23250176-23250628(+) (11)	NA	O80992	Abscisic acid receptor PYL2	AT2G26040.1	PYR1-like 2 	LOC_Os02g13330.1	"bet v I allergen family protein, putative"	Medtr1g020630.1	Bet v I allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206689.1.S1_at	A	A1TS	POPTR_0006s24700	POPTR_0006s24700 (11)	scaffold_6:23279997-23280900(-) (11)	NA	NA	NA	AT5G11780.1	unknown protein; Has 37 Blast hits to 37 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g41640.1	expressed protein	Medtr1g020810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206690.1.S1_at	A	A1TS	POPTR_0006s24720	POPTR_0006s24720 (11)	scaffold_6:23301954-23302912(+) (11)	NA	NA	NA	AT1G23550.1	similar to RCD one 2 	LOC_Os03g12820.2	"ATP8, putative, expressed"	Medtr3g113780.1	"PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206691.1.S1_at	A	A1TS	POPTR_0006s24730	POPTR_0006s24730 (11)	scaffold_6:23306071-23306667(+) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g06960.1	"pentatricopeptide, putative"	Medtr6g069810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206692.1.S1_at	A	A1TS	POPTR_0006s24740	POPTR_0006s24740 (11)	scaffold_6:23309826-23310306(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g143100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.206693.1.S1_at	A	A1TS	POPTR_0006s24750	POPTR_0006s24750 (11)	scaffold_6:23315962-23316871(+) (11)	NA	NA	NA	AT1G23550.1	similar to RCD one 2 	LOC_Os03g12820.2	"ATP8, putative, expressed"	Medtr4g136750.1	"PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206696.1.S1_s_at	A	A2TS	POPTR_0006s24850	POPTR_0006s24850 (11)//POPTR_0006s24860 (11)	scaffold_6:23366055-23366343(-) (11)//scaffold_6:23381409-23381697(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g40818.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206697.1.S1_at	A	A1TS	POPTR_0006s24890	POPTR_0006s24890 (11)	scaffold_6:23401770-23403774(-) (11)	NA	NA	NA	AT3G20430.1	"CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os01g37842.1	expressed protein	Medtr8g138000.1	"RNA polymerase, alpha subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206698.1.S1_at	A	A1TS	POPTR_0006s24990	POPTR_0006s24990 (11)	scaffold_6:23469286-23470073(+) (11)	NA	NA	NA	AT5G56530.2	Protein of Unknown Function (DUF239) 	LOC_Os07g38590.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr6g013120.1	"Protein of unknown function DUF889, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206699.1.S1_at	A	A1TS	POPTR_0006s25000	POPTR_0006s25000 (11)	scaffold_6:23474448-23475352(+) (11)	NA	NA	NA	AT5G25950.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr3g140410.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206700.1.S1_at	A	A1TS	POPTR_0006s25030	POPTR_0006s25030 (11)	scaffold_6:23475891-23476271(-) (11)	NA	O82804	Protein EARLY FLOWERING 3	AT2G25930.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g38530.1	"ELF3 protein, putative, expressed"	Medtr3g140450.1	"early flowering 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206701.1.S1_at	A	A1TS	POPTR_0006s25060	POPTR_0006s25060 (11)	scaffold_6:23514090-23514341(-) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT3G49690.1	myb domain protein 84 	LOC_Os01g49160.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206701.1.S1_x_at	A	A1TS	POPTR_0006s25060	POPTR_0006s25060 (11)	scaffold_6:23514090-23515325(-) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT3G49690.1	myb domain protein 84 	LOC_Os01g49160.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206702.1.S1_at	A	A1TS	POPTR_0006s25090	POPTR_0006s25090 (11)	scaffold_6:23551756-23552020(+) (11)	NA	P26683	RNA polymerase sigma factor rpoD	AT3G53920.1	RNApolymerase sigma-subunit C 	LOC_Os05g51150.1	"RNA polymerase sigma factor, putative, expressed"	Medtr1g008400.1	"Sigma factor, ECF; Peptidase S1 and S6, chymotrypsin/Hap; Winged helix repressor DNA-binding; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.206703.1.S1_at	A	A1TS	POPTR_0006s25110	POPTR_0006s25110 (11)	scaffold_6:23568984-23569257(+) (11)	NA	NA	NA	AT5G11700.1	LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g09246.1	"glycine-rich protein, putative, expressed"	Medtr3g128150.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206703.1.S1_s_at	A	A1TS	POPTR_0006s25110	POPTR_0006s25110 (11)	scaffold_6:23568523-23569395(+) (11)	NA	NA	NA	AT5G11700.1	LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g09246.1	"glycine-rich protein, putative, expressed"	Medtr3g128150.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206704.1.S1_at	A	A1TS	POPTR_0006s25130	POPTR_0006s25130 (11)	scaffold_6:23575392-23575990(-) (11)	NA	NA	NA	AT4G32820.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr3g128160.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206705.1.S1_at	A	A1TS	POPTR_0006s25140	POPTR_0006s25140 (11)	scaffold_6:23580615-23580998(+) (11)	NA	NA	NA	AT1G20890.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76480.2); Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g58930.1	expressed protein	Medtr7g138510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206706.1.S1_at	A	A1TS	POPTR_0006s25190	POPTR_0006s25190 (9)	scaffold_6:23614698-23615618(-) (10)	NA	NA	NA	AT2G25870.1	haloacid dehalogenase-like hydrolase family protein 	LOC_Os01g53720.2	expressed protein	Medtr1g008360.1	"Protein of unknown function UPF0054; HAD-superfamily hydrolase subfamily IIB; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206707.1.S1_x_at	A	A1TS	POPTR_0006s25200	POPTR_0006s25200 (10)	scaffold_6:23624310-23624971(+) (10)	NA	Q54J73	Poly(A) polymerase	AT4G32850.6	nuclear poly(a) polymerase 	LOC_Os06g36360.4	expressed protein	Medtr3g128240.1	"DNA polymerase, beta-like region; Poly(A) polymerase, RNA-binding region; Poly(A) polymerase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.206708.1.S1_at	A	A1TS	POPTR_0006s25240	POPTR_0006s25240 (11)	scaffold_6:23649254-23649673(-) (11)	NA	P92934	Amino acid permease 6	AT5G49630.1	amino acid permease 6 	LOC_Os06g36180.1	"amino acid transporter, putative, expressed"	Medtr1g008320.1	"amino acid transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206710.1.S1_at	A	A1TS	POPTR_0006s25250	POPTR_0006s25250 (10)	scaffold_6:23659324-23660048(-) (11)	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os02g13520.1	"OsIAA7 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.206711.1.S1_at	A	A1TS	POPTR_0006s25260	POPTR_0006s25260 (11)	scaffold_6:23669739-23670476(-) (11)	NA	Q9LU15	Histidine-containing phosphotransfer protein 4	AT3G16360.2	HPT phosphotransmitter 4 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g122150.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.206712.1.S1_at	A	A1TS	POPTR_0006s25280	POPTR_0006s25280 (11)	scaffold_6:23687771-23688529(-) (11)	NA	P51615	NADP-dependent malic enzyme	AT5G25880.1	NADP-malic enzyme 3 	LOC_Os01g52500.2	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.206713.1.S1_at	A	A1TS	POPTR_0006s25370	POPTR_0006s25370 (11)	scaffold_6:23754279-23754689(+) (11)	NA	NA	NA	AT2G25780.1	Protein of unknown function (DUF1677) 	LOC_Os05g44410.1	conserved hypothetical protein	Medtr3g130400.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206714.1.S1_at	A	A1TS	POPTR_0006s25440	POPTR_0006s25440 (11)	scaffold_6:23831595-23831909(+) (11)	NA	NA	NA	AT5G11620.1	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related 	LOC_Os06g36030.1	"SWIM zinc finger family protein, expressed"	Medtr3g130540.1	"Zinc finger, RING-type; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.206715.1.S1_at	A	A1TS	POPTR_0006s25460	POPTR_0006s25460 (11)	scaffold_6:23838703-23838884(-) (11)	NA	NA	NA	AT2G25800.1	Protein of unknown function (DUF810) 	LOC_Os09g17760.1	expressed protein	Medtr3g130600.1	Munc13 homology 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206716.1.S1_at	A	A1TS	POPTR_0006s25470	POPTR_0006s25470 (9)	scaffold_6:23850793-23851361(+) (10)	NA	Q9C5D2	F-box/LRR-repeat protein 4	AT5G23340.1	RNI-like superfamily protein 	LOC_Os12g36670.1	"F-box/LRR-repeat protein 3, putative, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.206717.1.S1_at	A	A1TS	POPTR_0006s25490	POPTR_0006s25490 (11)	scaffold_6:23860691-23862301(-) (11)	NA	Q8VY26	"Carotenoid cleavage dioxygenase 8, chloroplastic"	AT4G32810.1	carotenoid cleavage dioxygenase 8 	LOC_Os01g54270.1	"transposon protein, putative, unclassified"	Medtr3g130620.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206718.1.S1_at	A	A1TS	POPTR_0006s25530	POPTR_0006s25530 (11)	scaffold_6:23924733-23925243(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G25820.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	Medtr4g159530.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.206720.1.S1_at	A	A1TS	POPTR_0006s25560	POPTR_0006s25560 (10)	scaffold_6:23952134-23952973(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g28400.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206721.1.S1_at	A	A1TS	POPTR_0006s25570	POPTR_0006s25570 (11)	scaffold_6:23958075-23958986(+) (11)	NA	Q84KG5	"Carotenoid 9,10(9',10')-cleavage dioxygenase"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os09g15240.1	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206722.1.S1_at	A	A1TS	POPTR_0006s25580	POPTR_0006s25580 (10)	scaffold_6:23958609-23966034(+) (10)	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os08g28240.1	"carotenoid cleavage dioxygenase, putative"	Medtr5g025270.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206724.1.S1_at	A	A1TS	POPTR_0006s25600	POPTR_0006s25600 (11)	scaffold_6:23980966-23981388(+) (11)	NA	Q9SL78	Putative RING-H2 finger protein ATL12	AT2G20030.1	RING/U-box superfamily protein 	LOC_Os05g51780.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr6g098760.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206725.1.S1_at	A	A1TS	POPTR_0006s25610	POPTR_0006s25610 (11)	scaffold_6:23986420-23986947(+) (11)	NA	Q8I0F4	Lissencephaly-1 homolog	AT3G50390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g13140.1	"WD domain, G-beta repeat domain containing protein"	Medtr1g025560.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206726.1.S1_at	A	A1MS	POPTR_0006s25630	POPTR_0006s25630 (9)	scaffold_6:24002777-24003606(+) (9)	NA	Q8W593	"Probable lactoylglutathione lyase, chloroplast"	AT1G67280.1	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein 	LOC_Os05g14194.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206727.1.S1_at	A	A1MS	POPTR_0006s25680	POPTR_0006s25680 (11)	scaffold_6:24057774-24059048(-) (11)	NA	Q94FY7	"Tocopherol cyclase, chloroplastic"	AT4G32770.1	"tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) "	LOC_Os02g17650.1	"tocopherol cyclase, chloroplast precursor, putative, expressed"	AC225517_3.1	"Tocopherol cyclase, chloroplast precursor, putative AC225517.6 12507-17093 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206728.1.S1_at	A	A1TS	POPTR_0006s25690	POPTR_0006s25690 (11)	scaffold_6:24064075-24065757(-) (11)	NA	Q9VTG7	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	AT1G27600.2	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os01g48440.1	"glycosyltransferase family 43 protein, putative, expressed"	AC225517_25.1	"Glycosyl transferase, family 43 AC225517.6 110047-106863 E EGN_Mt090430 200"	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
PtpAffx.206729.1.S1_at	A	A1TS	POPTR_0006s25710	POPTR_0006s25710 (11)	scaffold_6:24081356-24081577(+) (11)	NA	Q9FXA4	U-box domain-containing protein 26	AT5G11550.1	ARM repeat superfamily protein 	LOC_Os05g48580.1	conserved hypothetical protein	AC225507_13.1	"U-box domain-containing protein 26, related AC225507.11 50842-51882 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206730.1.S1_at	A	A1TS	POPTR_0006s25720	POPTR_0006s25720 (11)	scaffold_6:24110556-24110692(-) (11)	NA	NA	NA	AT5G11530.1	embryonic flower 1 (EMF1) 	NA	NA	AC225507_17.1	hypothetical protein AC225507.11 68679-65006 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206730.1.S1_s_at	A	A1TS	POPTR_0006s25720	POPTR_0006s25720 (11)	scaffold_6:24110738-24111133(-) (11)	NA	NA	NA	AT5G11530.1	embryonic flower 1 (EMF1) 	NA	NA	AC225507_17.1	hypothetical protein AC225507.11 68679-65006 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206731.1.S1_at	A	A1TS	POPTR_0006s25740	POPTR_0006s25740 (11)	scaffold_6:24134051-24134472(-) (11)	NA	P29136	Metalloendoproteinase 1	AT4G16640.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g037460.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0008152|metabolic process	NA	NA
PtpAffx.206732.1.S1_at	A	A1TS	POPTR_0006s25750	POPTR_0006s25750 (11)	scaffold_6:24134431-24138994(-) (11)	NA	P29136	Metalloendoproteinase 1	AT1G59970.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g037460.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.206733.1.S1_at	A	A1TS	POPTR_0006s25770	POPTR_0006s25770 (11)	scaffold_6:24146584-24148344(-) (11)	NA	Q6ZVM7	TOM1-like protein 2	AT4G32760.1	ENTH/VHS/GAT family protein 	LOC_Os02g17350.2	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.206734.1.S1_at	A	A1TS	POPTR_0006s25780	POPTR_0006s25780 (11)	scaffold_6:24156817-24156976(+) (11)	NA	Q94KR7	"Translation initiation factor IF-1, chloroplastic"	AT4G11175.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os05g22716.1	"translation initiation factor IF-1, chloroplast, putative"	Medtr8g070990.1	"S1, IF1 type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.206734.1.S1_x_at	A	A1TS	POPTR_0006s25780	POPTR_0006s25780 (11)	scaffold_6:24156779-24156976(+) (11)	NA	Q94KR7	"Translation initiation factor IF-1, chloroplastic"	AT4G11175.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os05g22716.1	"translation initiation factor IF-1, chloroplast, putative"	Medtr8g070990.1	"S1, IF1 type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.206735.1.S1_at	A	A1TS	POPTR_0006s25810	POPTR_0006s25810 (11)	scaffold_6:24172162-24173596(+) (11)	NA	NA	NA	AT2G20740.1	Tetraspanin family protein 	LOC_Os04g58330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206736.1.S1_at	A	A1TS	POPTR_0006s25880	POPTR_0006s25880 (11)	scaffold_6:24218167-24219335(-) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.206738.1.S1_at	A	A1TS	POPTR_0006s25920	POPTR_0006s25920 (11)	scaffold_6:24251582-24252227(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206739.1.S1_at	A	A1TS	POPTR_0006s25930	POPTR_0006s25930 (9)	scaffold_6:24253388-24254184(+) (9)	NA	Q66GV0	Protein Mpv17	AT3G24570.2	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os01g12800.1	"peroxisomal membrane protein, putative, expressed"	Medtr1g009450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.206740.1.S1_s_at	A	A1TS	POPTR_0006s25960	POPTR_0006s25960 (11)	scaffold_6:24260113-24260615(-) (11)	NA	O49343	Pentatricopeptide repeat-containing protein At2g30780	AT2G30780.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06370.2	"PPR repeat domain containing protein, putative, expressed"	Medtr1g009460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206741.1.S1_x_at	A	A1TS	POPTR_0006s25970	POPTR_0006s25970 (11)	scaffold_6:24264203-24264697(-) (11)	NA	Q9LDK9	Beta-adaptin-like protein A	AT5G11490.1	adaptin family protein 	LOC_Os01g43630.2	"adaptin, putative, expressed"	Medtr3g132640.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.206743.1.S1_at	A	A1TS	POPTR_0006s26000	POPTR_0006s26000 (11)	scaffold_6:24290970-24292915(-) (11)	NA	Q8VZ59	Flavin-containing monooxygenase YUCCA6	AT5G25620.1	Flavin-binding monooxygenase family protein 	LOC_Os01g53200.1	"flavin monooxygenase, putative, expressed"	Medtr1g009490.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206746.1.S1_at	A	A1TS	POPTR_0006s26040	POPTR_0006s26040 (10)	scaffold_6:24354566-24356252(+) (11)	NA	NA	NA	AT5G11470.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g42460.1	"BAH domain containing protein, expressed"	Medtr3g132700.1	Bromo adjacent region 	NA	GO:0003677|DNA binding	NA
PtpAffx.206747.1.S1_at	A	A1TS	POPTR_0006s26060	POPTR_0006s26060 (11)	scaffold_6:24366422-24366680(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g132740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206748.1.S1_at	A	A1TS	POPTR_0006s26090	POPTR_0006s26090 (11)	scaffold_6:24377946-24378519(-) (11)	NA	P0C898	Putative pentatricopeptide repeat-containing protein At3g15130	AT3G15130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g58980.1	"pentatricopeptide, putative"	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206749.1.S1_at	A	A1TS	POPTR_0006s26100	POPTR_0006s26100 (11)	scaffold_6:24381327-24382086(-) (11)	NA	NA	NA	AT4G32680.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52343.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g44132.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206750.1.S1_at	A	A1TS	POPTR_0006s26120	POPTR_0006s26120 (11)	scaffold_6:24389723-24390083(-) (11)	NA	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os01g08550.1	"aminoacyl-tRNA synthetase, putative, expressed"	Medtr3g135760.1	"aminoacyl-tRNA synthetase family, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206751.1.S1_at	A	A1TS	POPTR_0006s26140	POPTR_0006s26140 (11)	scaffold_6:24428035-24431140(+) (11)	NA	P92960	Potassium channel KAT3	AT4G32650.3	potassium channel in Arabidopsis thaliana 3 	LOC_Os01g52070.1	"potassium channel AKT1, putative, expressed"	Medtr3g135850.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.206751.1.S1_x_at	A	A1TS	POPTR_0006s26140	POPTR_0006s26140 (11)	scaffold_6:24428035-24431182(+) (11)	NA	P92960	Potassium channel KAT3	AT4G32650.3	potassium channel in Arabidopsis thaliana 3 	LOC_Os01g52070.1	"potassium channel AKT1, putative, expressed"	Medtr3g135850.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.206752.1.S1_at	A	A1TS	POPTR_0006s26170	POPTR_0006s26170 (11)	scaffold_6:24448252-24448799(-) (11)	NA	Q9LUJ2	Pentatricopeptide repeat-containing protein At3g22690	AT3G22690.2	"INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). "	LOC_Os04g14130.3	"pentatricopeptide, putative, expressed"	Medtr5g006710.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206753.1.S1_at	A	A1TS	POPTR_0006s26190	POPTR_0006s26190 (11)	scaffold_6:24465515-24465951(+) (11)	NA	Q9T0K5	Leucine-rich repeat extensin-like protein 3	AT4G13340.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g41120.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr4g158630.1	"leucine-rich repeat family protein, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.206754.1.S1_at	A	A1MS	POPTR_0006s26200	POPTR_0006s26200 (11)	scaffold_6:24470834-24472254(-) (11)	NA	NA	NA	AT1G60560.1	SWIM zinc finger family protein 	LOC_Os07g12520.1	"zinc ion binding protein, putative, expressed"	Medtr8g047590.1	"Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.206755.1.S1_at	A	A1TS	POPTR_0006s26230	POPTR_0006s26230 (11)	scaffold_6:24491617-24493271(-) (11)	NA	Q8RXE7	Probable ADP-ribosylation factor GTPase-activating protein AGD14	AT4G32630.2	ArfGap/RecO-like zinc finger domain-containing protein 	LOC_Os02g11820.2	"GTPase-activating protein, putative, expressed"	Medtr6g102260.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	GO:0005622|intracellular
PtpAffx.206756.1.S1_at	A	A1TS	POPTR_0006s26230	POPTR_0006s26230 (9)	scaffold_6:24496260-24496816(-) (11)	NA	Q8RXE7	Probable ADP-ribosylation factor GTPase-activating protein AGD14	AT4G32630.2	ArfGap/RecO-like zinc finger domain-containing protein 	LOC_Os02g11820.2	"GTPase-activating protein, putative, expressed"	Medtr6g102260.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	GO:0005622|intracellular
PtpAffx.206757.1.S1_s_at	A	A1TS	POPTR_0006s26250	POPTR_0006s26250 (11)	scaffold_6:24518780-24519006(+) (11)	NA	NA	NA	AT2G25670.2	BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink). 	LOC_Os01g08410.1	"early fruit mRNA, putative, expressed"	Medtr3g136050.1	"M355, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206758.1.S1_at	A	A1TS	POPTR_0006s26290	POPTR_0006s26290 (11)	scaffold_6:24533370-24534420(+) (11)	NA	Q5R8J8	DnaJ homolog subfamily B member 4	AT5G25530.1	DNAJ heat shock family protein 	LOC_Os08g06460.1	"dnaJ domain containing protein, expressed"	Medtr3g136130.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.206759.1.S1_at	A	A1TS	POPTR_0006s26300	POPTR_0006s26300 (11)	scaffold_6:24537867-24538676(-) (11)	NA	Q92576	PHD finger protein 3	AT5G25520.2	SPOC domain / Transcription elongation factor S-II protein 	LOC_Os02g11780.1	"transcription factor S-II, central domain containing protein, expressed"	Medtr3g136140.1	"Transcription elongation factor S-II, central region; SPOC "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
PtpAffx.206760.1.S1_at	A	A1TS	POPTR_0006s26340	POPTR_0006s26340 (11)	scaffold_6:24564037-24565555(-) (11)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.206761.1.S1_at	A	A1TS	POPTR_0006s26360	POPTR_0006s26360 (11)	scaffold_6:24582893-24583173(+) (11)	NA	Q9LFM6	"Pentatricopeptide repeat-containing protein At5g11310, mitochondrial"	AT5G11310.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g32170.1	"pentatricopeptide, putative, expressed"	Medtr1g013010.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206762.1.S1_at	A	A1TS	POPTR_0006s26380	POPTR_0006s26380 (11)	scaffold_6:24605291-24607741(+) (11)	NA	Q39103	Gibberellin 3-beta-dioxygenase 1	AT1G15550.1	gibberellin 3-oxidase 1 	LOC_Os01g08220.1	"gibberellin 3-beta-dioxygenase 2-2, putative, expressed"	Medtr1g013080.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.206763.1.S1_at	A	A1TS	POPTR_0006s26400	POPTR_0006s26400 (11)	scaffold_6:24615738-24615937(-) (11)	NA	Q54CV3	Coiled-coil domain-containing protein 93 homolog	AT4G32560.2	paramyosin-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206764.1.S1_at	A	A1TS	POPTR_0006s26410	POPTR_0006s26410 (11)	scaffold_6:24623395-24625570(-) (11)	NA	O04706	Gibberellin 20 oxidase 1-B	AT1G52820.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr1g013100.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.206765.1.S1_at	A	A1TS	POPTR_0006s26430	POPTR_0006s26430 (11)	scaffold_6:24655534-24656710(-) (11)	NA	Q9LFM5	Flavin-containing monooxygenase YUCCA4	AT5G11320.1	Flavin-binding monooxygenase family protein 	LOC_Os01g53200.1	"flavin monooxygenase, putative, expressed"	Medtr1g013140.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206766.1.S1_at	A	A1TS	POPTR_0006s26470	POPTR_0006s26470 (11)	scaffold_6:24699682-24700434(-) (11)	NA	Q9FJ30	Putative F-box/LRR-repeat protein At5g41840	AT5G41840.1	F-box/RNI-like superfamily protein 	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.206767.1.S1_at	A	A1TS	POPTR_0006s26490	POPTR_0006s26490 (11)	scaffold_6:24708052-24708843(-) (11)	NA	NA	NA	AT5G11330.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os06g39660.1	"FAD binding domain containing protein, expressed"	Medtr1g013200.1	FAD dependent oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206769.1.S1_at	A	A1TS	POPTR_0006s26590	POPTR_0006s26590 (11)	scaffold_6:24762192-24763301(+) (11)	NA	Q9XI23	Boron transporter 4	AT1G15460.1	HCO3- transporter family 	LOC_Os01g08020.1	"boron transporter protein, putative, expressed"	Medtr3g136480.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206770.1.S1_at	A	A1TS	POPTR_0006s26600	POPTR_0006s26600 (11)	scaffold_6:24766254-24766955(-) (11)	NA	Q8GXE6	Potassium channel AKT6	AT2G25600.1	Shaker pollen inward K+ channel 	LOC_Os01g45990.1	"potassium channel AKT1, putative, expressed"	Medtr8g119290.1	Cyclic nucleotide-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206771.1.S1_at	A	A1TS	POPTR_0006s26640	POPTR_0006s26640 (11)	scaffold_6:24800369-24801282(-) (11)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.1	"coatomer subunit beta, putative, expressed"	AC234703_19.3	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206773.1.S1_at	A	A1TS	POPTR_0006s26670	POPTR_0006s26670 (11)	scaffold_6:24813757-24814042(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206774.1.S1_at	A	A1TS	POPTR_0006s26680	POPTR_0006s26680 (11)	scaffold_6:24818517-24818825(-) (11)	NA	NA	NA	AT4G32440.1	Plant Tudor-like RNA-binding protein 	LOC_Os02g11000.2	"agenet domain containing protein, putative, expressed"	Medtr8g119470.1	ENT; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.206775.1.S1_at	A	A1TS	POPTR_0006s26700	POPTR_0006s26700 (11)	scaffold_6:24831568-24832843(-) (11)	NA	Q7YS61	tRNA (cytosine-5-)-methyltransferase	AT5G25480.1	DNA methyltransferase-2 	LOC_Os01g42630.2	"C-5 cytosine-specific DNA methylase, putative, expressed"	Medtr2g009190.1	C-5 cytosine-specific DNA methylase 	GO:0006306|DNA methylation||GO:0044260|cellular macromolecule metabolic process||GO:0044281|small molecule metabolic process	GO:0003677|DNA binding	NA
PtpAffx.206776.1.S1_at	A	A1TS	POPTR_0006s26710	POPTR_0006s26710 (11)	scaffold_6:24840753-24841880(+) (11)	NA	A2AR02	Peptidyl-prolyl cis-trans isomerase G	AT4G32420.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr1g013450.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.206778.1.S1_at	A	A1TS	POPTR_0006s26720	POPTR_0006s26720 (9)	scaffold_6:24846394-24846913(+) (11)	NA	Q9C9A6	U-box domain-containing protein 10	AT2G23140.2	RING/U-box superfamily protein with ARM repeat domain 	LOC_Os01g66130.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr3g136580.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206779.1.S1_at	A	A1TS	POPTR_0006s26760	POPTR_0006s26760 (11)	scaffold_6:24875178-24875725(+) (11)	NA	NA	NA	AT5G25500.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g10110.1	expressed protein	Medtr3g163990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206780.1.S1_at	A	A1TS	POPTR_0006s26770	POPTR_0006s26770 (10)	scaffold_6:24877533-24877996(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g009850.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206781.1.S1_at	A	A1TS	POPTR_0006s26830	POPTR_0006s26830 (11)	scaffold_6:24910547-24910815(-) (11)	NA	P29518	"Protein brittle-1, chloroplastic/amyloplastic"	AT4G32400.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40050.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g136730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206781.1.S1_s_at	A	A2TS	POPTR_0006s26830	POPTR_0006s26830 (11)//POPTR_0018s01560 (9)	scaffold_18:1463807-1464101(-) (9)//scaffold_6:24910826-24911120(-) (11)	NA	P29518	"Protein brittle-1, chloroplastic/amyloplastic"	AT4G32400.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40050.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g136730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206782.1.S1_at	A	A1TS	POPTR_0006s26850	POPTR_0006s26850 (11)	scaffold_6:24929540-24930996(-) (11)	NA	Q3V384	Lactation elevated protein 1	AT2G25530.1	AFG1-like ATPase family protein 	LOC_Os03g63500.1	"ATPase, AFG1 family domain containing protein, expressed"	Medtr1g013700.1	AFG1-like ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.206784.1.S1_at	A	A1TS	POPTR_0006s26880	POPTR_0006s26880 (11)	scaffold_6:24955228-24956579(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT1G51940.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os01g53840.1	"protein kinase family protein, putative, expressed"	Medtr8g016010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206785.1.S1_at	A	A1TS	POPTR_0006s26900	POPTR_0006s26900 (9)	scaffold_6:24961716-24962182(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206786.1.S1_at	A	A1TS	POPTR_0006s26910	POPTR_0006s26910 (11)	scaffold_6:24966227-24966784(-) (11)	NA	NA	NA	AT1G64870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45200.1); Has 99 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g10320.1	conserved hypothetical protein	Medtr3g136820.1	Immunoglobulin/major histocompatibility complex 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206788.1.S1_at	A	A1TS	POPTR_0006s26920	POPTR_0006s26920 (11)	scaffold_6:24973975-24975700(-) (11)	NA	Q9LW07	Probable polygalacturonase At3g15720	AT4G35670.1	Pectin lyase-like superfamily protein 	LOC_Os05g46510.1	"polygalacturonase, putative, expressed"	Medtr2g126280.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.206789.1.S1_at	A	A1TS	POPTR_0006s26930	POPTR_0006s26930 (11)	scaffold_6:24979818-24980516(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20679.1.A1_at	A	A1TS	POPTR_0007s09170	POPTR_0007s09170 (11)	scaffold_7:8384147-8384454(-) (11)	NA	Q39435	Rac-like GTP-binding protein RHO1	AT2G17800.2	Arabidopsis RAC-like 1 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.20679.2.S1_s_at	A	A2TS	POPTR_0005s11290	POPTR_0007s09170 (11)//POPTR_0005s11290 (11)	scaffold_5:8179424-8180454(-) (11)//scaffold_7:8385879-8386980(-) (11)	NA	Q39435	Rac-like GTP-binding protein RHO1	AT2G17800.2	Arabidopsis RAC-like 1 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.206790.1.S1_at	A	A1TS	POPTR_0006s26940	POPTR_0006s26940 (11)	scaffold_6:24982652-24982716(-) (11)	NA	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.206792.1.S1_at	A	A1TS	POPTR_0006s27000	POPTR_0006s27000 (11)	scaffold_6:25028991-25029667(+) (11)	NA	Q43007	Phospholipase D alpha 1	AT3G15730.1	phospholipase D alpha 1 	LOC_Os01g07760.2	"phospholipase D, putative, expressed"	Medtr2g126370.1	"C2; Peptidase, cysteine peptidase active site "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.206793.1.S1_x_at	A	A1TS	POPTR_0006s27020	POPTR_0006s27020 (11)	scaffold_6:25049949-25050308(+) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.206795.1.S1_at	A	A1TS	POPTR_0006s27060	POPTR_0006s27060 (11)	scaffold_6:25079739-25081313(-) (11)	NA	Q8GY91	Putative L-ascorbate peroxidase 6	AT4G32320.1	ascorbate peroxidase 6 	LOC_Os08g41090.1	"peroxidase precursor, putative, expressed"	Medtr3g137110.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.206796.1.S1_at	A	A1MS	POPTR_0006s27090	POPTR_0006s27090 (11)	scaffold_6:25103966-25104511(+) (11)	NA	NA	NA	AT4G32290.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g44580.3	"DNA binding protein, putative, expressed"	Medtr3g137380.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.206797.1.S1_s_at	A	A1TS	POPTR_0006s27110	POPTR_0006s27110 (11)	scaffold_6:25121398-25121995(-) (11)	NA	Q8LF20	Putative clathrin assembly protein At2g25430	AT2G25430.1	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr3g137180.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.206798.1.S1_at	A	A1TS	POPTR_0006s27120	POPTR_0006s27120 (11)	scaffold_6:25129239-25129960(-) (11)	NA	C0LGH2	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	AT1G56130.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os04g52630.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr2g090750.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.206800.1.S1_at	A	A1TS	POPTR_0006s27150	POPTR_0006s27150 (11)	scaffold_6:25148349-25151009(+) (11)	NA	Q15B89	UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (Fragment)	AT4G32272.1	Nucleotide/sugar transporter family protein 	LOC_Os02g40030.1	"transporter family protein, putative, expressed"	Medtr1g014080.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.206801.1.S1_at	A	A1TS	POPTR_0006s27190	POPTR_0006s27190 (11)	scaffold_6:25165823-25166390(-) (11)	NA	NA	NA	AT4G32190.1	Myosin heavy chain-related protein 	LOC_Os02g09340.1	expressed protein	Medtr1g013970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206802.1.S1_at	A	A1TS	POPTR_0006s27240	POPTR_0006s27240 (11)	scaffold_6:25209845-25210434(-) (11)	NA	Q9SSQ4	Protein FAR1-RELATED SEQUENCE 6	AT1G52520.1	FAR1-related sequence 6 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr2g034270.1	"FAR1; Heavy metal transport/detoxification protein; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.206803.1.S1_at	A	A1TS	POPTR_0006s27250	POPTR_0006s27250 (11)	scaffold_6:25220932-25221398(+) (11)	POPTR_0018s01920 (7)	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT2G25320.1	TRAF-like family protein 	LOC_Os02g39990.1	expressed protein	Medtr3g137580.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206804.1.S1_at	A	A1TS	POPTR_0006s27260	POPTR_0006s27260 (9)	scaffold_6:25228827-25229529(+) (11)	NA	NA	NA	AT5G25320.1	ACT-like superfamily protein 	LOC_Os02g34990.2	"ACT domain containing protein, putative, expressed"	Medtr7g022460.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.206805.1.S1_at	A	A1TS	POPTR_0006s27270	POPTR_0006s27270 (11)	scaffold_6:25232315-25232356(-) (11)//scaffold_896:1123-1164(-) (11)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.206806.1.S1_at	A	A1TS	POPTR_0006s27300	POPTR_0006s27300 (11)	scaffold_6:25252288-25252813(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g55920.1	expressed protein	Medtr3g137650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206807.1.S1_s_at	A	A1TS	POPTR_0006s27310	POPTR_0006s27310 (11)	scaffold_6:25259344-25260832(+) (11)	POPTR_0018s02000 (6)	Q03730	Uncharacterized vacuolar membrane protein YML018C	AT4G32140.1	EamA-like transporter family 	LOC_Os04g55260.1	"thiamine-repressible mitochondrial transport protein THI74, putative, expressed"	Medtr7g064590.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206808.1.S1_at	A	A1TS	POPTR_0006s27350	POPTR_0006s27350 (11)	scaffold_6:25282624-25283825(-) (11)	NA	Q96GN5	Cell division cycle-associated 7-like protein	AT5G38690.1	Zinc-finger domain of monoamine-oxidase A repressor R1 protein 	LOC_Os05g23530.4	expressed protein	Medtr4g128660.1	protein binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206809.1.S1_at	A	A1TS	POPTR_0006s27360	POPTR_0006s27360 (11)	scaffold_6:25288923-25289422(-) (11)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.1	glucuronidase 3 	LOC_Os02g55870.1	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206810.1.S1_at	A	A1TS	POPTR_0006s27370	POPTR_0006s27370 (11)	scaffold_6:25290425-25291168(+) (11)	NA	NA	NA	AT4G32105.1	"Beta-1,3-N-Acetylglucosaminyltransferase family protein "	LOC_Os11g32070.1	conserved hypothetical protein	Medtr2g080840.1	"Glycosyl transferase, family 31 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206811.1.S1_at	A	A2TS	POPTR_0006s27410	POPTR_0006s27420 (11)//POPTR_0006s27410 (11)	scaffold_6:25324804-25326135(+) (11)//scaffold_6:25328225-25329556(+) (11)	NA	Q94AI7	Protein TOPLESS	AT1G15750.4	Transducin family protein / WD-40 repeat family protein 	LOC_Os08g06480.1	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr8g121060.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206812.1.S1_at	A	A1TS	POPTR_0006s27450	POPTR_0006s27450 (11)	scaffold_6:25351491-25351949(-) (11)	NA	Q91Z38	Tetratricopeptide repeat protein 1	AT2G25290.3	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein 	LOC_Os09g38390.1	"octicosapeptide/Phox/Bem1p, putative, expressed"	Medtr8g147450.1	Octicosapeptide/Phox/Bem1p; Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206814.1.S1_at	A	A1MS	POPTR_0006s27490	POPTR_0006s27490 (9)	scaffold_6:25381160-25382005(-) (9)	NA	NA	NA	AT2G25270.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206815.1.S1_at	A	A1TS	POPTR_0006s27550	POPTR_0006s27550 (11)	scaffold_6:25406098-25406535(+) (11)	NA	NA	NA	AT5G25240.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g50940.1	"NHL repeat-containing protein, putative, expressed"	Medtr8g122650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206816.1.S1_at	A	A1TS	POPTR_0006s27560	POPTR_0006s27560 (11)	scaffold_6:25416958-25417406(-) (11)	NA	P48000	Homeobox protein knotted-1-like 3	AT5G25220.1	KNOTTED1-like homeobox gene 3 	LOC_Os08g19650.1	"homeobox protein knotted-1, putative, expressed"	Medtr3g137900.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.206817.1.S1_at	A	A1TS	POPTR_0006s27580	POPTR_0006s27580 (10)	scaffold_6:25435440-25436032(-) (11)	NA	Q3U0M1	Trafficking protein particle complex subunit 9	AT5G11040.1	TRS120 	LOC_Os04g42370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206818.1.S1_at	A	A1MS	POPTR_0006s27580	POPTR_0006s27580 (10)	scaffold_6:25438170-25438429(-) (10)	NA	Q3U0M1	Trafficking protein particle complex subunit 9	AT5G11040.1	TRS120 	LOC_Os04g42370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206819.1.S1_at	A	A1TS	POPTR_0006s27580	POPTR_0006s27580 (11)	scaffold_6:25438902-25439187(-) (11)	NA	Q3U0M1	Trafficking protein particle complex subunit 9	AT5G11040.1	TRS120 	LOC_Os04g42370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206820.1.S1_at	A	A1TS	POPTR_0006s27580	POPTR_0006s27580 (10)	scaffold_6:25439764-25441357(-) (10)	NA	Q3U0M1	Trafficking protein particle complex subunit 9	AT5G11040.1	TRS120 	LOC_Os04g42370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206821.1.S1_at	A	A1TS	POPTR_0006s27590	POPTR_0006s27590 (11)	scaffold_6:25446347-25446536(+) (11)	NA	Q84VX3	Aberrant root formation protein 4	AT5G11030.2	aberrant lateral root formation 4 	LOC_Os08g19320.1	"aberrant root formation protein 4, putative, expressed"	Medtr4g012220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206822.1.S1_at	A	A1TS	POPTR_1403s00200	POPTR_1403s00200 (9)	scaffold_1403:580-2920(-) (11)	NA	NA	NA	AT2G18950.1	homogentisate phytyltransferase 1 	LOC_Os06g43880.1	"prenyltransferase, putative, expressed"	Medtr8g129290.1	UbiA prenyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206824.1.S1_at	A	A1TS	POPTR_0006s27730	POPTR_0006s27730 (11)	scaffold_6:25615146-25615612(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206825.1.S1_at	A	A1TS	POPTR_0006s27750	POPTR_0006s27750 (9)	scaffold_6:25625181-25626217(+) (11)	NA	NA	NA	AT4G31930.1	Mitochondrial glycoprotein family protein 	LOC_Os09g38500.2	"mitochondrial glycoprotein, putative, expressed"	Medtr4g022510.1	Mitochondrial glycoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206826.1.S1_s_at	A	A1TS	POPTR_0006s27770	POPTR_0006s27770 (11)	scaffold_6:25637470-25637994(+) (11)//scaffold_6:25647482-25647965(+) (10)	NA	Q13231	Chitotriosidase-1	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain 	LOC_Os11g27400.1	"glycosyl hydrolase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.206829.1.S1_at	A	A1TS	POPTR_0006s27810	POPTR_0006s27810 (11)	scaffold_6:25668105-25669661(-) (11)	NA	Q9S775	CHD3-type chromatin-remodeling factor PICKLE	AT2G25170.1	chromatin remodeling factor CHD3 (PICKLE) 	LOC_Os06g08480.1	"CHD3-type chromatin-remodeling factor PICKLE, putative, expressed"	Medtr3g138080.1	"Helicase, C-terminal; Homeodomain-like; Protein of unknown function DUF1087 "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.206829.1.S1_x_at	A	A1TS	POPTR_0006s27810	POPTR_0006s27810 (11)	scaffold_6:25668105-25669728(-) (11)	NA	Q9S775	CHD3-type chromatin-remodeling factor PICKLE	AT2G25170.1	chromatin remodeling factor CHD3 (PICKLE) 	LOC_Os06g08480.1	"CHD3-type chromatin-remodeling factor PICKLE, putative, expressed"	Medtr3g138080.1	"Helicase, C-terminal; Homeodomain-like; Protein of unknown function DUF1087 "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.206830.1.S1_at	A	A1TS	POPTR_0006s27820	POPTR_0006s27820 (11)	scaffold_6:25689439-25689975(-) (11)	NA	Q9VGY6	DOMON domain-containing protein CG14681	AT5G54830.1	DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein 	LOC_Os09g38520.1	"DOMON domain containing protein, expressed"	AC233651_15.1	DOMON; Cytochrome b561 / ferric reductase transmembrane AC233651.1 46198-48399 H EGN_Mt090430 200	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006548|histidine catabolic process	GO:0004500|dopamine beta-monooxygenase activity	NA
PtpAffx.206831.1.S1_at	A	A1TS	POPTR_0006s27860	POPTR_0006s27860 (11)	scaffold_6:25712411-25713687(+) (11)	NA	Q8DJ40	Chaperone protein ClpB 1	AT2G25140.1	casein lytic proteinase B4 	LOC_Os02g08490.1	"chaperone protein clpB 1, putative, expressed"	Medtr3g138120.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.206832.1.S1_at	A	A1TS	POPTR_0006s27870	POPTR_0006s27870 (11)	scaffold_6:25714500-25715029(-) (11)	NA	NA	NA	AT5G03990.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g04280.1	conserved hypothetical protein	Medtr7g108030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206833.1.S1_at	A	A1TS	POPTR_0006s27880	POPTR_0006s27880 (11)	scaffold_6:25716904-25717347(-) (11)	NA	NA	NA	AT1G23850.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 47 Blast hits to 40 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206834.1.S1_at	A	A1TS	POPTR_0006s27920	POPTR_0006s27920 (11)	scaffold_6:25755289-25755756(+) (11)	NA	Q5U241	Sister chromatid cohesion protein PDS5 homolog B-B	AT4G31880.2	LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). 	LOC_Os02g39920.1	"AT hook motif family protein, expressed"	Medtr3g138190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206835.1.S1_at	A	A1TS	POPTR_0006s27940	POPTR_0006s27940 (11)	scaffold_6:25791324-25791362(+) (11)	NA	Q8W1D5	CBL-interacting serine/threonine-protein kinase 25	AT5G25110.1	CBL-interacting protein kinase 25 	LOC_Os09g25090.1	"CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g016620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206837.1.S1_at	A	A1TS	POPTR_0006s27960	POPTR_0006s27960 (11)	scaffold_6:25837180-25837635(-) (11)	NA	Q9SK28	Formin-like protein 18	AT2G25050.1	Actin-binding FH2 (Formin Homology) protein 	LOC_Os08g17820.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g016730.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206838.1.S1_at	A	A1TS	POPTR_0006s27960	POPTR_0006s27960 (11)	scaffold_6:25839251-25839808(-) (11)	NA	Q9SK28	Formin-like protein 18	AT2G25050.1	Actin-binding FH2 (Formin Homology) protein 	LOC_Os08g17820.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g016730.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206839.1.S1_at	A	A1TS	POPTR_0006s27990	POPTR_0006s27990 (11)	scaffold_6:25861242-25861577(+) (11)	NA	P59583	Probable WRKY transcription factor 32	AT4G30935.1	WRKY DNA-binding protein 32 	LOC_Os08g17400.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr8g145380.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.206840.1.S1_at	A	A1TS	POPTR_0006s28000	POPTR_0006s28000 (11)	scaffold_6:25863664-25863984(-) (11)	NA	Q8RXN4	"3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial"	AT4G31810.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os10g40540.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr1g016790.1	Enoyl-CoA hydratase/isomerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206841.1.S1_at	A	A1MS	POPTR_0006s28000	POPTR_0006s28000 (9)	scaffold_6:25864982-25866378(-) (9)	NA	Q8RXN4	"3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial"	AT4G31810.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os10g40540.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr1g016790.1	Enoyl-CoA hydratase/isomerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206842.1.S1_at	A	A1TS	POPTR_0006s28060	POPTR_0006s28060 (11)	scaffold_6:25899803-25900116(+) (11)	NA	Q9SZ52	"Pentatricopeptide repeat-containing protein At4g31850, chloroplastic"	AT4G31850.1	proton gradient regulation 3 	LOC_Os10g28600.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g138450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206843.1.S1_at	A	A1TS	POPTR_0006s28070	POPTR_0006s28070 (11)	scaffold_6:25903088-25903922(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206844.1.S1_at	A	A1TS	POPTR_0006s28080	POPTR_0006s28080 (11)	scaffold_6:25905170-25905986(-) (11)	NA	NA	NA	AT4G24972.1	tapetum determinant 1 	LOC_Os10g14020.1	"TPD1, putative, expressed"	Medtr3g150890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206845.1.S1_at	A	A1TS	POPTR_0006s28100	POPTR_0006s28100 (11)	scaffold_6:25919575-25920000(-) (11)	NA	Q9LS72	Pentatricopeptide repeat-containing protein At3g29230	AT3G29230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g38880.1	"tetratricopeptide-like helical, putative, expressed"	Medtr7g011110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206846.1.S1_at	A	A1TS	POPTR_0006s28130	POPTR_0006s28130 (11)	scaffold_6:25934043-25934738(+) (11)	NA	NA	NA	AT5G10820.1	Major facilitator superfamily protein 	LOC_Os09g25560.1	"BT1 family protein, putative, expressed"	Medtr1g017050.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206847.1.S1_at	A	A1TS	POPTR_0006s28180	POPTR_0006s28180 (11)	scaffold_6:25961674-25962308(-) (11)	NA	NA	NA	AT5G25050.1	Major facilitator superfamily protein 	LOC_Os06g08750.1	"integral membrane transporter family protein, putative, expressed"	Medtr1g017050.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206848.1.S1_at	A	A1TS	POPTR_0006s28220	POPTR_0006s28220 (11)	scaffold_6:25981650-25982920(-) (11)	NA	Q03730	Uncharacterized vacuolar membrane protein YML018C	AT4G32140.1	EamA-like transporter family 	LOC_Os04g55260.1	"thiamine-repressible mitochondrial transport protein THI74, putative, expressed"	Medtr7g064590.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206849.1.S1_at	A	A1TS	POPTR_0006s28230	POPTR_0006s28230 (11)	scaffold_6:25985918-25986050(-) (11)	NA	Q9SM44	"Monogalactosyldiacylglycerol synthase, chloroplastic"	AT4G31780.2	monogalactosyl diacylglycerol synthase 1 	LOC_Os09g25580.1	"monogalactosyldiacylglycerol synthase, putative, expressed"	AC235758_1.1	"Glycosyltransferase 28, C-terminal; Monogalactosyldiacylglycerol synthase AC235758.1 7116-1932 E EGN_Mt090430 200"	GO:0009247|glycolipid biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.206850.1.S1_at	A	A1TS	POPTR_0006s28270	POPTR_0006s28270 (10)	scaffold_6:26013076-26014208(+) (10)	NA	Q3E6P4	F-box protein At2g02240	AT2G02240.1	F-box family protein 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr1g092930.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206851.1.S1_at	A	A1TS	POPTR_0006s28290	POPTR_0006s28290 (11)	scaffold_6:26021838-26022220(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206852.1.S1_at	A	A1TS	POPTR_0006s28340	POPTR_0006s28340 (11)	scaffold_6:26054290-26054698(+) (11)	NA	Q8RXV3	Probable protein phosphatase 2C 59	AT4G31750.1	HOPW1-1-interacting 2 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206853.1.S1_at	A	A1TS	POPTR_0006s28410	POPTR_0006s28410 (11)	scaffold_6:26094896-26100640(+) (11)	NA	Q9FVR6	"Uncharacterized protein At1g32220, chloroplastic"	AT5G10730.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g35039.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138720.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206853.1.S1_x_at	A	A1TS	POPTR_0006s28410	POPTR_0006s28410 (11)	scaffold_6:26094896-26100703(+) (11)	NA	Q9FVR6	"Uncharacterized protein At1g32220, chloroplastic"	AT5G10730.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g35039.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138720.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206856.1.S1_s_at	A	A3TS	POPTR_0002s07650	POPTR_0002s07650 (11)//POPTR_0002s07670 (11)//POPTR_0002s07660 (11)	scaffold_2:5230837-5231042(-) (11)//scaffold_2:5238414-5238619(-) (11)//scaffold_2:5254374-5254579(-) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206860.1.S1_at	A	A1TS	POPTR_0006s28530	POPTR_0006s28530 (11)	scaffold_6:26193014-26193949(-) (11)	NA	Q3S4A7	Histidine kinase 5	AT5G10720.1	histidine kinase 5 	LOC_Os06g44410.1	"histidine kinase, putative, expressed"	Medtr1g016180.1	Response regulator receiver; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.206861.1.S1_at	A	A1TS	POPTR_0006s28540	POPTR_0006s28540 (11)	scaffold_6:26215780-26218109(+) (11)	NA	Q9SJA1	Ubiquitin carboxyl-terminal hydrolase 19	AT2G24640.1	ubiquitin-specific protease 19 	LOC_Os06g44380.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.206861.1.S1_s_at	A	A2TS	POPTR_0006s28540	POPTR_0006s28540 (11)//POPTR_0018s03350 (11)	scaffold_18:2954889-2957292(+) (11)//scaffold_6:26215741-26217746(+) (11)	NA	Q9SJA1	Ubiquitin carboxyl-terminal hydrolase 19	AT2G24640.1	ubiquitin-specific protease 19 	LOC_Os06g44380.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.206862.1.S1_s_at	A	A2TS	POPTR_0006s28560	POPTR_0018s03370 (11)//POPTR_0006s28560 (11)	scaffold_18:2976878-2977127(+) (11)//scaffold_6:26235436-26235685(+) (11)	NA	Q9SB75	Probable xyloglucan glycosyltransferase 5	AT4G31590.1	Cellulose-synthase-like C5 	LOC_Os08g15420.1	"CSLC3 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206863.1.S1_s_at	A	A2TS	POPTR_0006s28640	POPTR_0006s28940 (11)//POPTR_0006s28640 (11)	scaffold_6:26261895-26261939(-) (11)//scaffold_6:26458403-26458447(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g25740.1	"powdery mildew resistance protein PM3F, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.206863.1.S1_x_at	A	A1TS	POPTR_0006s28640	POPTR_0006s28640 (11)	scaffold_6:26261755-26262168(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g25740.1	"powdery mildew resistance protein PM3F, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.206864.1.S1_at	A	A1TS	POPTR_0006s28650	POPTR_0006s28650 (11)	scaffold_6:26281590-26281998(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206865.1.S1_at	A	A1TS	POPTR_0006s28660	POPTR_0006s28660 (11)	scaffold_6:26284580-26285161(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.206866.1.S1_s_at	A	A1TS	POPTR_0006s28700	POPTR_0006s28700 (11)	scaffold_6:26310401-26310511(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.206869.1.S1_at	A	A1TS	POPTR_0007s00250	POPTR_0007s00250 (11)	scaffold_7:48324-48904(-) (11)	NA	Q9LU94	Putative pentatricopeptide repeat-containing protein At3g25970	AT3G25970.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os08g28830.1	"pentatricopeptide, putative, expressed"	Medtr8g073340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206871.1.S1_at	A	A1TS	POPTR_0007s00290	POPTR_0007s00290 (11)	scaffold_7:75707-75957(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206872.1.S1_at	A	A1TS	POPTR_0007s00310	POPTR_0007s00310 (11)	scaffold_7:87008-87117(-) (11)	NA	NA	NA	AT2G31890.1	RAP 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206873.1.S1_at	A	A1TS	POPTR_0007s00320	POPTR_0007s00320 (11)	scaffold_7:92483-93760(-) (11)	NA	P52416	"Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic"	AT1G05610.1	ADP-glucose pyrophosphorylase small subunit 2 	LOC_Os08g25734.2	"glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed"	Medtr5g104670.1	Nucleotidyl transferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.206874.1.S1_at	A	A1TS	POPTR_0007s00350	POPTR_0007s00350 (11)	scaffold_7:110400-112502(+) (11)	NA	Q9SKB3	Poly(ADP-ribose) glycohydrolase 1	AT2G31870.2	Poly (ADP-ribose) glycohydrolase (PARG) 	LOC_Os03g62680.1	hypothetical protein	Medtr3g028610.1	Poly glycohydrolase 	GO:0005975|carbohydrate metabolic process	GO:0004649|poly(ADP-ribose) glycohydrolase activity	NA
PtpAffx.206875.1.S1_at	A	A1MA	POPTR_0007s00360	POPTR_0007s00360 (10)	scaffold_7:116062-116802(-) (10)	NA	NA	NA	AT2G31840.1	Thioredoxin superfamily protein 	LOC_Os05g34470.1	expressed protein	Medtr4g134500.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206876.1.S1_at	A	A1TS	POPTR_0007s00380	POPTR_0007s00380 (11)	scaffold_7:127977-128481(-) (11)	NA	NA	NA	AT2G43990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 1419 Blast hits to 494 proteins in 144 species: Archae - 0; Bacteria - 300; Metazoa - 246; Fungi - 102; Plants - 31; Viruses - 2; Other Eukaryotes - 738 (source: NCBI BLink). 	LOC_Os11g14240.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206877.1.S1_at	A	A1MS	POPTR_0007s00410	POPTR_0007s00410 (10)	scaffold_7:145597-145995(-) (10)	NA	O80560	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 12"	AT2G43900.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206878.1.S1_at	A	A1TS	POPTR_0007s00430	POPTR_0007s00430 (11)	scaffold_7:156503-158493(+) (11)	NA	Q9Y5Q8	General transcription factor 3C polypeptide 5	AT5G24450.1	"Transcription factor IIIC, subunit 5 "	LOC_Os01g34430.1	expressed protein	Medtr7g065320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206878.1.S1_x_at	A	A1TS	POPTR_0007s00430	POPTR_0007s00430 (11)	scaffold_7:156503-158492(+) (11)	NA	Q9Y5Q8	General transcription factor 3C polypeptide 5	AT5G24450.1	"Transcription factor IIIC, subunit 5 "	LOC_Os01g34430.1	expressed protein	Medtr7g065320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206881.1.S1_at	A	A1TS	POPTR_0007s00530	POPTR_0007s00530 (10)	scaffold_7:216163-216596(+) (10)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr4g122130.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.206882.1.S1_at	A	A1TS	POPTR_0007s00580	POPTR_0007s00580 (11)	scaffold_7:229862-230531(-) (11)	NA	Q70PR7	Vinorine synthase	AT3G30280.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g43040.2	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.206884.1.S1_at	A	A1TS	POPTR_0007s00600	POPTR_0007s00600 (11)	scaffold_7:265808-266084(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.206884.1.S1_x_at	A	A1TS	POPTR_0007s00600	POPTR_0007s00600 (11)	scaffold_7:265808-266084(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.206885.1.S1_at	A	A1TS	POPTR_0007s00620	POPTR_0007s00620 (11)	scaffold_7:300205-300796(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr8g012480.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.206886.1.S1_at	A	A1TS	POPTR_0007s00650	POPTR_0007s00650 (11)	scaffold_7:328320-328762(+) (11)	NA	Q39173	Probable NADP-dependent oxidoreductase P2	AT5G16960.1	Zinc-binding dehydrogenase family protein 	LOC_Os01g66720.1	"NADP-dependent oxidoreductase, putative, expressed"	AC202489_15.1	"Alcohol dehydrogenase superfamily, zinc-containing AC202489.10 93691-90625 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206887.1.S1_at	A	A1TS	POPTR_0007s00660	POPTR_0007s00660 (11)	scaffold_7:332401-332831(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206888.1.S1_at	A	A1TS	POPTR_0007s00670	POPTR_0007s00670 (11)	scaffold_7:333670-333942(-) (11)	POPTR_0007s00620 (7)	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr8g012480.1	TIR; NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.206888.1.S1_x_at	A	A1TS	POPTR_0007s00670	POPTR_0007s00670 (11)	scaffold_7:333667-333992(-) (11)	POPTR_0007s00620 (7)	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr8g012480.1	TIR; NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.206889.1.S1_at	A	A1TS	POPTR_0007s00730	POPTR_0007s00730 (11)	scaffold_7:371370-372751(+) (11)	NA	Q5ZK33	"LETM1 and EF-hand domain-containing protein 1, mitochondrial"	AT3G59820.1	LETM1-like protein 	LOC_Os02g39550.2	"calcium-binding mitochondrial protein anon-60Da, putative, expressed"	Medtr7g090240.1	LETM1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206890.1.S1_at	A	A1TS	POPTR_0007s00750	POPTR_0007s00750 (11)	scaffold_7:379378-379944(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206891.1.S1_at	A	A1TS	POPTR_0007s00770	POPTR_0007s00770 (11)	scaffold_7:393677-394254(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206892.1.S1_at	A	A1TS	POPTR_0007s00810	POPTR_0007s00810 (11)	scaffold_7:411525-412028(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g02800.1	"receptor-like kinase ARK1AS, putative, expressed"	Medtr6g043710.1	"membrane located receptor-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206893.1.S1_at	A	A1TS	POPTR_0007s00830	POPTR_0007s00830 (11)	scaffold_7:423186-423412(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g02800.1	"receptor-like kinase ARK1AS, putative, expressed"	Medtr6g043710.1	"membrane located receptor-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206894.1.S1_s_at	A	A1MS	POPTR_0007s00850	POPTR_0007s00850 (11)	scaffold_7:431082-431364(-) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34230.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr5g036690.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206895.1.S1_at	A	A1TS	POPTR_0007s00890	POPTR_0007s00890 (11)	scaffold_7:465061-465287(+) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34230.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr7g092470.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206895.1.S1_x_at	A	A1TS	POPTR_0007s00890	POPTR_0007s00890 (11)	scaffold_7:464708-465287(+) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34230.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr7g092470.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206896.1.S1_at	A	A1TS	POPTR_0007s00910	POPTR_0007s00910 (11)	scaffold_7:487772-488390(+) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206898.1.S1_at	A	A1TS	POPTR_0007s00940	POPTR_0007s00940 (11)	scaffold_7:502402-503464(-) (11)	NA	O04904	"Dihydroorotase, mitochondrial"	AT4G22930.1	pyrimidin 4 	LOC_Os01g54370.1	"dihydropyrimidinase, putative, expressed"	Medtr4g108290.1	Amidohydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.206899.1.S1_at	A	A1TS	POPTR_0007s00950	POPTR_0007s00950 (11)	scaffold_7:512824-513027(-) (11)	NA	Q93ZR6	O-acyltransferase WSD1	AT3G49190.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os01g48874.1	"wax synthase, putative, expressed"	Medtr7g009360.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206900.1.S1_at	A	A1TS	POPTR_0007s00960	POPTR_0007s00960 (11)	scaffold_7:523702-524341(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g108310.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206901.1.S1_at	A	A1TS	POPTR_0007s00970	POPTR_0007s00970 (11)	scaffold_7:526410-527322(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g009360.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206902.1.S1_at	A	A1TS	POPTR_0007s00990	POPTR_0007s00990 (11)	scaffold_7:543613-544305(+) (11)	NA	P36096	Transmembrane E3 ubiquitin-protein ligase 1	AT2G20650.2	RING/U-box superfamily protein 	LOC_Os07g31850.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206903.1.S1_at	A	A1TS	POPTR_0007s01000	POPTR_0007s01000 (11)	scaffold_7:545281-545415(-) (11)	NA	Q9LJ64	Pollen-specific leucine-rich repeat extensin-like protein 1	AT4G28380.1	Leucine-rich repeat (LRR) family protein 	LOC_Os11g43640.1	"retrotransposon protein, putative, unclassified"	Medtr3g148740.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.206903.1.S1_s_at	A	A1TS	POPTR_0007s01000	POPTR_0007s01000 (11)	scaffold_7:545455-545852(-) (11)	NA	Q9LJ64	Pollen-specific leucine-rich repeat extensin-like protein 1	AT4G28380.1	Leucine-rich repeat (LRR) family protein 	LOC_Os11g43640.1	"retrotransposon protein, putative, unclassified"	Medtr3g148740.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.206905.1.S1_at	A	A1TS	POPTR_0007s01070	POPTR_0007s01070 (11)	scaffold_7:587495-587808(+) (11)	NA	A8MQA2	Non-specific lipid-transfer protein 13	AT5G44265.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206906.1.S1_at	A	A1TS	POPTR_0007s01100	POPTR_0007s01100 (11)	scaffold_7:596432-597687(-) (11)	NA	P98205	Putative phospholipid-transporting ATPase 2	AT5G44240.2	aminophospholipid ATPase 2 	LOC_Os11g25980.1	"phospholipid-transporting ATPase 2, putative, expressed"	Medtr4g108430.1	"ATPase, E1-E2 type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206907.1.S1_s_at	A	A3TS	POPTR_0007s01120	POPTR_0007s01120 (11)//POPTR_1117s00210 (9)//POPTR_1117s00200 (9)	scaffold_1117:2386-3509(+) (9)//scaffold_1117:5417-6531(+) (9)//scaffold_7:609694-610801(+) (11)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.206909.1.S1_at	A	A1MS	POPTR_0007s01140	POPTR_0007s01140 (9)	scaffold_7:617154-617793(+) (10)	NA	Q8QZR1	Tyrosine aminotransferase	AT2G20610.1	Tyrosine transaminase family protein 	LOC_Os11g35040.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206910.1.S1_at	A	A1TS	POPTR_0007s01150	POPTR_0007s01150 (11)	scaffold_7:621898-621934(+) (11)	NA	Q6DR04	Reticulon-like protein B17	AT2G20590.1	Reticulon family protein 	LOC_Os02g19990.2	"reticulon domain containing protein, putative, expressed"	Medtr4g108500.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.206912.1.S1_x_at	A	A1TS	POPTR_0007s01230	POPTR_0007s01230 (11)	scaffold_7:672886-673223(-) (11)	NA	Q6LA43	Two-component response regulator-like APRR2	AT2G20570.1	GBF's pro-rich region-interacting factor 1 	LOC_Os06g24070.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr4g108850.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206913.1.S1_at	A	A1TS	POPTR_0007s01240	POPTR_0007s01240 (11)	scaffold_7:687770-688333(+) (11)	NA	NA	NA	AT2G20562.1	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11600.1	conserved hypothetical protein	Medtr4g109490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206915.1.S1_at	A	A1TS	POPTR_0007s01330	POPTR_0007s01330 (11)	scaffold_7:719062-719590(-) (11)	NA	NA	NA	AT5G44180.1	Homeodomain-like transcriptional regulator 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr4g108880.1	hypothetical protein 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.206916.1.S1_at	A	A1TS	POPTR_0007s01350	POPTR_0007s01350 (11)	scaffold_7:756494-757026(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.206917.1.S1_at	A	A1TS	POPTR_0007s01360	POPTR_0007s01360 (11)	scaffold_7:760425-760670(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206918.1.S1_at	A	A1TS	POPTR_0007s01370	POPTR_0007s01370 (11)	scaffold_7:763545-763971(+) (11)	NA	Q9FN29	Homeobox-leucine zipper protein ATHB-52	AT5G53980.1	homeobox protein 52 	LOC_Os01g45570.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g039350.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.206919.1.S1_at	A	A1TS	POPTR_0007s01390	POPTR_0007s01390 (11)	scaffold_7:786616-788011(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206920.1.S1_at	A	A1TS	POPTR_0007s01420	POPTR_0007s01420 (11)	scaffold_7:803980-805821(+) (11)	NA	O22870	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplastic"	AT2G43560.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g42850.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g092670.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.206921.1.S1_at	A	A1TS	POPTR_0007s01430	POPTR_0007s01430 (11)	scaffold_7:809283-810145(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os03g51110.1	"MYB family transcription factor, putative, expressed"	Medtr6g078130.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206922.1.S1_at	A	A1TS	POPTR_0007s01450	POPTR_0007s01450 (11)	scaffold_7:817829-819120(+) (11)	NA	Q9STF9	Pentatricopeptide repeat-containing protein At3g46870	AT5G09320.1	Vacuolar sorting protein 9 (VPS9) domain 	LOC_Os07g36450.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g120590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206923.1.S1_at	A	A1TS	POPTR_0007s01460	POPTR_0007s01460 (11)	scaffold_7:820543-820793(-) (11)	NA	Q9NU19	TBC1 domain family member 22B	AT2G30710.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g34040.1	"TBC domain containing protein, expressed"	Medtr2g120560.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.206924.1.S1_at	A	A1MS	POPTR_0007s01470	POPTR_0007s01470 (11)	scaffold_7:826022-826233(+) (11)	NA	Q14692	Ribosome biogenesis protein BMS1 homolog	AT1G06720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g21530.1	"AARP2CN domain containing protein, expressed"	Medtr4g092630.3	AARP2CN 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206924.1.S1_x_at	A	A1MS	POPTR_0007s01470	POPTR_0007s01470 (11)	scaffold_7:826022-826233(+) (11)	NA	Q14692	Ribosome biogenesis protein BMS1 homolog	AT1G06720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g21530.1	"AARP2CN domain containing protein, expressed"	Medtr4g092630.3	AARP2CN 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206925.1.S1_at	A	A1TS	POPTR_0007s01480	POPTR_0007s01480 (10)	scaffold_7:829756-830395(+) (10)	NA	NA	NA	AT4G04885.1	PCF11P-similar protein 4 	LOC_Os08g08830.1	expressed protein	Medtr4g098610.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206926.1.S1_s_at	A	A2TS	POPTR_0007s01500	POPTR_0007s01500 (11)//POPTR_0596s00200 (11)	scaffold_596:2229-3245(-) (11)//scaffold_7:838925-839939(+) (11)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT2G30700.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 68 Blast hits to 67 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g38980.2	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206927.1.S1_at	A	A1TS	POPTR_0007s01530	POPTR_0007s01530 (11)	scaffold_7:853646-854234(-) (11)	NA	O22864	Protein NLP8	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206928.1.S1_at	A	A1TS	POPTR_0007s01540	POPTR_0007s01540 (11)	scaffold_7:869839-870537(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206929.1.S1_at	A	A1TS	POPTR_0007s01550	POPTR_0007s01550 (11)	scaffold_7:876103-876676(-) (11)	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr8g109760.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206930.1.S1_at	A	A1TS	POPTR_0007s01560	POPTR_0007s01560 (11)	scaffold_7:885700-886613(+) (11)	NA	Q2NKQ1	Small G protein signaling modulator 1	AT2G43490.3	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g01010.2	"TBC domain containing protein, expressed"	Medtr2g097180.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.206930.1.S1_s_at	A	A2TS	POPTR_0007s01560	POPTR_0017s05160 (11)//POPTR_0007s01560 (11)	scaffold_17:3955418-3956154(+) (11)//scaffold_7:885832-886566(+) (11)	NA	Q2NKQ1	Small G protein signaling modulator 1	AT2G43490.3	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g01010.2	"TBC domain containing protein, expressed"	Medtr2g097180.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.206931.1.S1_at	A	A1TS	POPTR_0007s01570	POPTR_0007s01570 (11)	scaffold_7:887272-888123(+) (11)	NA	NA	NA	AT2G43490.4	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g01010.1	"TBC domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206932.1.S1_at	A	A1TS	POPTR_0007s01580	POPTR_0007s01580 (11)	scaffold_7:890454-891085(-) (11)	NA	O22862	Probable peroxidase 26	AT2G43480.1	Peroxidase superfamily protein 	LOC_Os10g41720.1	"peroxidase precursor, putative, expressed"	Medtr7g103680.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.206935.1.S1_at	A	A1TS	POPTR_0007s01640	POPTR_0007s01640 (11)	scaffold_7:940365-942777(+) (11)	NA	NA	NA	AT2G43465.1	RNA-binding ASCH domain protein 	LOC_Os11g16420.1	"protein of unknown function containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206936.1.S1_at	A	A1TS	POPTR_0007s01650	POPTR_0007s01650 (11)	scaffold_7:950128-950643(+) (11)	NA	Q9SZF7	Protein SHORT-ROOT	AT4G37650.1	GRAS family transcription factor 	LOC_Os07g39820.1	"SHR, putative, expressed"	Medtr5g015580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206936.1.S1_s_at	A	A2TS	POPTR_0007s01650	POPTR_0017s05450 (11)//POPTR_0007s01650 (11)	scaffold_17:4310190-4310535(+) (11)//scaffold_7:950275-950620(+) (11)	NA	Q9SZF7	Protein SHORT-ROOT	AT4G37650.1	GRAS family transcription factor 	LOC_Os07g39820.1	"SHR, putative, expressed"	Medtr5g015580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206937.1.S1_at	A	A1TS	POPTR_0007s01670	POPTR_0007s01670 (11)	scaffold_7:962353-962612(+) (11)	NA	Q9LTR2	"Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic"	AT3G20320.1	trigalactosyldiacylglycerol2 	LOC_Os01g74280.1	"TGD2, putative, expressed"	Medtr5g095460.1	Mammalian cell entry related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206937.1.S1_x_at	A	A1TS	POPTR_0007s01670	POPTR_0007s01670 (11)	scaffold_7:962358-962612(+) (11)	NA	Q9LTR2	"Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic"	AT3G20320.1	trigalactosyldiacylglycerol2 	LOC_Os01g74280.1	"TGD2, putative, expressed"	Medtr5g095460.1	Mammalian cell entry related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206939.1.S1_at	A	A1TS	POPTR_0007s01730	POPTR_0007s01730 (11)	scaffold_7:1005689-1006269(+) (11)	NA	Q8LPQ9	Flowering time control protein FPA	AT2G43410.4	RNA binding 	LOC_Os09g34070.2	"RNA recognition motif containing protein, expressed"	Medtr4g092490.1	RNA-binding region RNP-1 (RNA recognition motif); SPOC 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.20694.2.S1_a_at	A	A1TS	POPTR_0005s02590	POPTR_0005s02590 (11)	scaffold_5:1650157-1650647(-) (11)	NA	NA	NA	AT4G15800.1	ralf-like 33 	LOC_Os12g35670.1	"RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed"	Medtr7g138890.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206940.1.S1_at	A	A1TS	POPTR_0007s01740	POPTR_0007s01740 (11)	scaffold_7:1008568-1009050(+) (11)	NA	NA	NA	AT5G57500.1	Galactosyltransferase family protein 	LOC_Os02g54370.1	"hypro1, putative, expressed"	Medtr8g128750.1	"Glycosyl transferase, family 31 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206942.1.S1_at	A	A1TS	POPTR_0007s01770	POPTR_0007s01770 (11)	scaffold_7:1025732-1026418(-) (11)	NA	P68175	Strictosidine synthase	AT3G59530.2	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g15710.1	"strictosidine synthase, putative, expressed"	Medtr2g118410.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.206943.1.S1_at	A	A1TS	POPTR_1105s00200	POPTR_1105s00200 (11)	scaffold_1105:512-991(-) (11)//scaffold_7:1029246-1029724(+) (10)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.4	"OsFBX331 - F-box domain containing protein, expressed"	Medtr5g027510.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206944.1.S1_at	A	A1TS	POPTR_0007s01780	POPTR_0007s01780 (11)	scaffold_7:1031509-1032110(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206945.1.S1_at	A	A1TS	POPTR_0007s01800	POPTR_0007s01800 (11)	scaffold_7:1041209-1041727(-) (11)	NA	NA	NA	AT3G59520.1	RHOMBOID-like protein 13 	LOC_Os01g67040.2	"OsRhmbd5 - Putative Rhomboid homologue, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.206946.1.S1_at	A	A1TS	POPTR_0007s01810	POPTR_0007s01810 (11)	scaffold_7:1046004-1046423(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206947.1.S1_at	A	A1TS	POPTR_0007s01820	POPTR_0007s01820 (11)	scaffold_7:1051508-1052015(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT3G59510.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g43250.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr2g118400.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.206948.1.S1_at	A	A1TS	POPTR_0007s01840	POPTR_0007s01840 (11)	scaffold_7:1063450-1064415(+) (11)	NA	O48593	"Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial"	AT4G17300.1	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os07g30200.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr8g105750.1	"Aspartyl-tRNA synthetase bacterial/mitochondrial type; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.206949.1.S1_at	A	A1TS	POPTR_0007s01860	POPTR_0007s01860 (11)	scaffold_7:1078311-1079582(-) (11)	NA	Q67XL4	"Uncharacterized CRM domain-containing protein At3g25440, chloroplastic"	AT2G28480.1	RNA-binding CRS1 / YhbY (CRM) domain protein 	LOC_Os01g72820.4	"CRS1/YhbY domain containing protein, putative, expressed"	Medtr8g138320.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.206950.1.S1_at	A	A1TS	POPTR_0007s01870	POPTR_0007s01870 (11)	scaffold_7:1084955-1085923(+) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G59470.2	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g15040.1	"FAR1 family protein, expressed"	Medtr2g118350.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206951.1.S1_at	A	A1TS	POPTR_0007s01880	POPTR_0007s01880 (11)	scaffold_7:1087090-1087495(+) (11)	NA	Q55GU1	Probable O-sialoglycoprotein endopeptidase	AT4G22720.2	Actin-like ATPase superfamily protein 	LOC_Os05g10630.1	"O-sialoglycoprotein endopeptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206952.1.S1_at	A	A1TS	POPTR_0007s01890	POPTR_0007s01890 (11)	scaffold_7:1089679-1089988(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206953.1.S1_at	A	A1TS	POPTR_0007s01900	POPTR_0007s01900 (11)	scaffold_7:1091631-1092440(+) (11)	NA	NA	NA	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr8g119830.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206956.1.S1_at	A	A1TS	POPTR_0007s01950	POPTR_0007s01950 (11)	scaffold_7:1107870-1109343(+) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G07500.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr2g118460.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206957.1.S1_at	A	A1TS	POPTR_0007s01970	POPTR_0007s01970 (11)	scaffold_7:1121834-1123576(+) (11)	NA	NA	NA	AT3G59430.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206958.1.S1_at	A	A1MS	POPTR_0007s01990	POPTR_0007s01990 (9)	scaffold_7:1142106-1142653(-) (9)	NA	Q9LX30	Probable serine/threonine-protein kinase GCN2	AT3G59410.1	protein kinase family protein 	LOC_Os04g41510.1	"serine/threonine-protein kinase GCN2, putative, expressed"	AC233109_16.1	Protein kinase AC233109.4 62891-57719 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206959.1.S1_at	A	A1MS	POPTR_0007s01990	POPTR_0007s01990 (10)	scaffold_7:1144332-1145266(-) (10)	NA	Q9LX30	Probable serine/threonine-protein kinase GCN2	AT3G59410.1	protein kinase family protein 	LOC_Os04g41510.1	"serine/threonine-protein kinase GCN2, putative, expressed"	AC233109_16.1	Protein kinase AC233109.4 62891-57719 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206960.1.S1_at	A	A1TS	POPTR_0007s01990	POPTR_0007s01990 (10)	scaffold_7:1149422-1150263(-) (11)	NA	Q9LX30	Probable serine/threonine-protein kinase GCN2	AT3G59410.1	protein kinase family protein 	LOC_Os04g41510.1	"serine/threonine-protein kinase GCN2, putative, expressed"	AC233109_16.1	Protein kinase AC233109.4 62891-57719 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206961.1.S1_at	A	A1TS	POPTR_0007s02020	POPTR_0007s02020 (11)	scaffold_7:1177354-1177391(+) (11)	NA	Q620W3	Protein EFR3 homolog	AT1G05960.1	ARM repeat superfamily protein 	LOC_Os01g67290.1	"cyclin-related protein, putative, expressed"	Medtr2g118260.1	"cyclin-related protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206962.1.S1_at	A	A1MS	POPTR_0007s02040	POPTR_0007s02040 (10)	scaffold_7:1188901-1191987(-) (11)	NA	NA	NA	AT1G05950.1	unknown protein; Has 50 Blast hits to 45 proteins in 14 species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os09g33940.1	expressed protein	Medtr2g118240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206963.1.S1_at	A	A1TS	POPTR_0007s02050	POPTR_0007s02050 (11)	scaffold_7:1201522-1201782(-) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr2g085850.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.206964.1.S1_at	A	A1TS	POPTR_0007s02060	POPTR_0007s02060 (11)	scaffold_7:1214138-1215157(+) (11)	NA	Q2KID2	Endonuclease III-like protein 1	AT2G31450.2	DNA glycosylase superfamily protein 	LOC_Os11g16580.1	"endonuclease III-like protein 1, putative, expressed"	Medtr2g118190.1	HhH-GPD 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0003677|DNA binding||GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	GO:0005622|intracellular
PtpAffx.206965.1.S1_at	A	A1TS	POPTR_0007s02100	POPTR_0007s02100 (11)	scaffold_7:1235978-1236568(-) (11)	NA	NA	NA	AT1G05894.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g12854.1	expressed protein	Medtr2g118140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206966.1.S1_at	A	A1TS	POPTR_0007s02120	POPTR_0007s02120 (11)	scaffold_7:1243959-1244809(+) (11)	NA	Q9SIQ7	Calcium-dependent protein kinase 24	AT2G31500.1	calcium-dependent protein kinase 24 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206967.1.S1_at	A	A1TS	POPTR_0007s02150	POPTR_0007s02150 (10)	scaffold_7:1277305-1278043(+) (10)	NA	NA	NA	AT1G05870.4	Protein of unknown function (DUF1685) 	LOC_Os11g17930.1	expressed protein	Medtr1g146930.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206968.1.S1_at	A	A1TS	POPTR_0007s02180	POPTR_0007s02180 (11)	scaffold_7:1309739-1311730(-) (11)	NA	P54967	Biotin synthase	AT2G43360.1	Radical SAM superfamily protein 	LOC_Os08g42730.1	"radical SAM enzyme, putative, expressed"	Medtr4g104400.1	Biotin and thiamin synthesis associated 	GO:0044283|small molecule biosynthetic process||GO:0009102|biotin biosynthetic process||GO:0044281|small molecule metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0004076|biotin synthase activity	NA
PtpAffx.206969.1.S1_s_at	A	A1TS	POPTR_0007s02190	POPTR_0007s02190 (11)	scaffold_7:1316159-1318129(-) (11)	NA	NA	NA	AT2G31600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g23840.1	expressed protein	Medtr7g099740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206970.1.S1_at	A	A1TS	POPTR_0007s02260	POPTR_0007s02260 (9)	scaffold_7:1344333-1344420(+) (9)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66980.1	suppressor of npr1-1 constitutive 4 	LOC_Os01g02580.1	protein kinase domain containing protein	Medtr1g034760.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206971.1.S1_s_at	A	A1TS	POPTR_0007s02220	POPTR_0007s02220 (11)	scaffold_7:1332074-1332108(-) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	LOC_Os01g02400.1	"protein kinase domain containing protein, expressed"	Medtr1g034890.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206972.1.S1_at	A	A1MS	POPTR_0007s02320	POPTR_0007s02320 (11)	scaffold_7:1368110-1368152(+) (11)	NA	NA	NA	AT5G49150.1	gamete expressed 2 	LOC_Os09g25650.1	"GEX2, putative, expressed"	Medtr5g020060.1	Immunoglobulin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206972.1.S1_s_at	A	A1TS	POPTR_0007s02320	POPTR_0007s02320 (11)	scaffold_7:1367260-1368121(+) (11)	NA	NA	NA	AT5G49150.1	gamete expressed 2 	LOC_Os09g25650.1	"GEX2, putative, expressed"	Medtr5g020060.1	Immunoglobulin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206973.1.S1_at	A	A1TS	POPTR_0007s02290	POPTR_0007s02290 (9)	scaffold_7:1360540-1360906(-) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr1g034890.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206974.1.S1_at	A	A1TS	POPTR_0007s02350	POPTR_0007s02350 (11)	scaffold_7:1384091-1384308(+) (11)	NA	NA	NA	AT2G43235.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g23420.1	"sugar porter, putative, expressed"	Medtr1g146860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206976.1.S1_at	A	A1TS	POPTR_0007s02370	POPTR_0007s02370 (11)	scaffold_7:1392605-1393153(-) (11)	NA	NA	NA	AT1G58210.1	kinase interacting family protein 	LOC_Os04g28040.1	expressed protein	Medtr5g040960.1	SANT associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206977.1.S1_at	A	A1TS	POPTR_0007s02380	POPTR_0007s02380 (11)	scaffold_7:1395166-1396235(-) (11)	NA	O42260	Survival of motor neuron protein-interacting protein 1	AT1G54380.1	spliceosome protein-related 	LOC_Os11g18830.1	"survival motor neuron containing protein, expressed"	Medtr1g146850.1	Survival motor neuron interacting protein 1 	GO:0000245|spliceosome assembly||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.206978.1.S1_at	A	A1TS	POPTR_0007s02380	POPTR_0007s02380 (9)	scaffold_7:1398456-1398990(-) (9)	NA	O42260	Survival of motor neuron protein-interacting protein 1	AT1G54380.1	spliceosome protein-related 	LOC_Os11g18830.1	"survival motor neuron containing protein, expressed"	Medtr1g146850.1	Survival motor neuron interacting protein 1 	GO:0000245|spliceosome assembly||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.206979.1.S1_at	A	A1TS	POPTR_0007s02400	POPTR_0007s02400 (11)	scaffold_7:1413196-1413823(+) (11)	NA	Q5G1S8	"Pentatricopeptide repeat-containing protein At3g18110, chloroplastic"	AT3G18110.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g09880.1	"EMB1270, putative, expressed"	Medtr5g008360.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206980.1.S1_at	A	A1TS	POPTR_0007s02410	POPTR_0007s02410 (11)	scaffold_7:1419572-1420384(+) (11)	NA	NA	NA	AT2G43210.2	Ubiquitin-like superfamily protein 	LOC_Os11g18880.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206980.1.S1_x_at	A	A1TS	POPTR_0007s02410	POPTR_0007s02410 (11)	scaffold_7:1418999-1420384(+) (11)	NA	NA	NA	AT2G43210.2	Ubiquitin-like superfamily protein 	LOC_Os11g18880.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206981.1.S1_at	A	A1TS	POPTR_0007s02420	POPTR_0007s02420 (11)	scaffold_7:1421711-1423672(-) (11)	NA	Q15GI3	Isoeugenol synthase 1	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009310.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.206985.1.S1_at	A	A1TS	POPTR_0007s02540	POPTR_0007s02540 (11)	scaffold_7:1503729-1503990(+) (11)	NA	NA	NA	AT2G32360.1	Ubiquitin-like superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206988.1.S1_at	A	A1TS	POPTR_0007s02600	POPTR_0007s02600 (11)	scaffold_7:1528232-1529996(-) (11)	NA	Q99JY4	TraB domain-containing protein	AT1G05270.1	TraB family protein 	LOC_Os05g42010.1	"TraB family protein, putative, expressed"	Medtr6g059350.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206990.1.S1_at	A	A1TS	POPTR_0007s02680	POPTR_0007s02680 (11)	scaffold_7:1567133-1568289(+) (11)	NA	O23379	Putative zinc finger protein CONSTANS-LIKE 11	AT4G15250.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g19444.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr2g103590.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.206991.1.S1_at	A	A1TS	POPTR_0007s02700	POPTR_0007s02700 (11)	scaffold_7:1573949-1574139(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206993.1.S1_at	A	A1TS	POPTR_0007s02750	POPTR_0007s02750 (11)	scaffold_7:1598903-1599576(+) (11)	NA	Q41001	Blue copper protein	AT2G32300.1	uclacyanin 1 	LOC_Os08g04340.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr2g103490.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.206994.1.S1_at	A	A1TS	POPTR_0007s02760	POPTR_0007s02760 (11)	scaffold_7:1602326-1603200(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g103440.1	"Formin-1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206995.1.S1_at	A	A1TS	POPTR_0007s02770	POPTR_0007s02770 (11)	scaffold_7:1612600-1612766(+) (11)	NA	Q2QW55	MADS-box transcription factor 33	AT1G77980.1	AGAMOUS-like 66 	LOC_Os08g38590.1	"OsMADS62 - MADS-box family gene with MIKC* type-box, expressed"	AC232874_24.1	"Transcription factor, MADS-box AC232874.1 73354-75197 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.206996.1.S1_at	A	A1TS	POPTR_0007s02780	POPTR_0007s02780 (11)	scaffold_7:1619802-1620685(+) (11)	NA	O23373	Formin-like protein 3	AT4G15200.1	formin 3 	LOC_Os07g36150.1	"formin-like protein 3 precursor, putative, expressed"	Medtr2g103420.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206997.1.S1_at	A	A1TS	POPTR_0007s02790	POPTR_0007s02790 (11)	scaffold_7:1621174-1621748(+) (11)	NA	Q94B77	Formin-like protein 5	AT5G54650.2	formin homology5 	LOC_Os07g36150.1	"formin-like protein 3 precursor, putative, expressed"	Medtr2g103420.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206998.1.S1_at	A	A1TS	POPTR_0007s02800	POPTR_0007s02800 (11)	scaffold_7:1624462-1624875(+) (11)	NA	NA	NA	AT1G61730.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os09g27850.1	"transcription regulator, putative, expressed"	Medtr7g140470.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206999.1.S1_s_at	A	A2TS	POPTR_0007s02810	POPTR_0007s02810 (11)//POPTR_0995s00200 (10)	scaffold_7:1633989-1635368(+) (11)//scaffold_995:411-1779(+) (10)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT4G16740.1	terpene synthase 03 	LOC_Os02g02930.1	"terpene synthase, putative, expressed"	Medtr2g103360.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.2070.1.S1_at	A	A1TS	POPTR_0015s00270	POPTR_0015s00270 (10)	scaffold_15:127811-128274(-) (10)	NA	Q6BQ20	Autophagy-related protein 13	AT3G49590.1	Autophagy-related protein 13 	LOC_Os02g43040.1	expressed protein	Medtr5g077400.1	"Aminoacyl-tRNA synthetase, class I "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207000.1.S1_at	A	A1TS	POPTR_0556s00200	POPTR_0556s00200 (11)	scaffold_556:7192-7379(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.207001.1.S1_at	A	A1TS	POPTR_0007s02840	POPTR_0007s02840 (11)	scaffold_7:1650155-1650306(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.207002.1.S1_at	A	A1TS	POPTR_0007s02870	POPTR_0007s02870 (11)	scaffold_7:1675616-1675962(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207003.1.S1_at	A	A1TS	POPTR_0007s02880	POPTR_0007s02880 (11)	scaffold_7:1684136-1684697(+) (11)	NA	Q9SN22	Scarecrow-like protein 32	AT3G49950.1	GRAS family transcription factor 	LOC_Os05g42130.1	"MONOCULM 1, putative, expressed"	Medtr2g103380.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207006.1.S1_at	A	A1TS	POPTR_0007s02930	POPTR_0007s02930 (11)	scaffold_7:1714101-1714872(-) (11)	NA	A7IZZ1	"(-)-limonene synthase, chloroplastic"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	NA	NA	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207006.1.S1_s_at	A	A2TS	POPTR_0007s02920	POPTR_0007s02930 (11)//POPTR_0007s02920 (11)	scaffold_7:1711042-1711552(+) (11)//scaffold_7:1713951-1714468(-) (11)	NA	Q7XAS7	"Isoprene synthase, chloroplastic"	AT4G16740.1	terpene synthase 03 	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr2g103340.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.207007.1.S1_at	A	A1TS	POPTR_0007s03030	POPTR_0007s03030 (11)	scaffold_7:1757613-1758573(+) (11)	NA	Q9LFP3	Probable glycosyltransferase At5g11130	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr5g032910.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.207010.1.S1_at	A	A1TS	POPTR_0007s03080	POPTR_0007s03080 (11)	scaffold_7:1775935-1776516(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g02760.1	"receptor-like kinase, putative, expressed"	Medtr6g043710.1	"membrane located receptor-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207011.1.S1_at	A	A1TS	POPTR_0007s03110	POPTR_0007s03110 (11)	scaffold_7:1793304-1794570(+) (11)	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr5g032910.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.207012.1.S1_at	A	A1TS	POPTR_0007s03120	POPTR_0007s03120 (10)	scaffold_7:1800929-1802363(-) (11)	NA	Q8GXL7	GATA transcription factor 24	AT3G21175.2	ZIM-like 1 	LOC_Os03g52450.1	"GATA transcription factor 25, putative, expressed"	Medtr4g121420.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.207013.1.S1_at	A	A1TS	POPTR_0007s03130	POPTR_0007s03130 (10)	scaffold_7:1808131-1809644(-) (10)	NA	Q8GXL7	GATA transcription factor 24	AT3G21175.1	ZIM-like 1 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr5g075430.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.207014.1.S1_at	A	A1TS	POPTR_0007s03150	POPTR_0007s03150 (11)	scaffold_7:1818655-1819535(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G64390.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr2g009690.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.207015.1.S1_at	A	A1MS	POPTR_0007s03180	POPTR_0007s03180 (9)	scaffold_7:1834658-1835485(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207015.1.S1_x_at	A	A1MS	POPTR_0007s03180	POPTR_0007s03180 (9)	scaffold_7:1834612-1835457(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207016.1.S1_at	A	A1TS	POPTR_0007s03220	POPTR_0007s03220 (11)	scaffold_7:1843398-1843638(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207017.1.S1_at	A	A2TS	POPTR_0007s03240	POPTR_0007s03240 (11)//POPTR_1565s00200 (11)	scaffold_1565:614-1226(+) (11)//scaffold_7:1854171-1854783(-) (11)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.2	Cysteine proteinases superfamily protein 	LOC_Os05g11770.2	"ulp1 protease family protein, putative, expressed"	Medtr2g009590.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.207018.1.S1_at	A	A1TS	POPTR_0007s03250	POPTR_0007s03250 (11)	scaffold_7:1864702-1866065(-) (11)	NA	P60028	Rab GDP dissociation inhibitor alpha	AT5G09550.1	GDP dissociation inhibitor family protein / Rab GTPase activator family protein 	LOC_Os03g16900.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g121110.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207019.1.S1_at	A	A1TS	POPTR_0007s03320	POPTR_0007s03320 (11)	scaffold_7:1926960-1927643(-) (11)	NA	NA	NA	AT5G64360.4	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g27460.3	"heat shock protein DnaJ, putative, expressed"	Medtr5g075120.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.207019.1.S1_s_at	A	A1TS	POPTR_0007s03320	POPTR_0007s03320 (11)	scaffold_7:1927026-1927978(-) (11)	NA	NA	NA	AT5G64360.4	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g27460.3	"heat shock protein DnaJ, putative, expressed"	Medtr5g075120.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.207020.1.S1_at	A	A1TS	POPTR_0007s03380	POPTR_0007s03380 (11)	scaffold_7:1950794-1951356(+) (11)	NA	Q9LJN4	Probable beta-D-xylosidase 5	AT3G19620.1	Glycosyl hydrolase family protein 	LOC_Os01g19220.1	"beta-D-xylosidase, putative, expressed"	Medtr2g008400.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.207021.1.S1_at	A	A1TS	POPTR_0007s03410	POPTR_0007s03410 (9)	scaffold_7:1959043-1959707(+) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os09g02830.1	OsMADS78 - MADS-box family gene with M-alpha type-box	Medtr3g109260.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.207022.1.S1_at	A	A1TS	POPTR_0007s03430	POPTR_0007s03430 (11)	scaffold_7:1967694-1968177(+) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os09g02830.1	OsMADS78 - MADS-box family gene with M-alpha type-box	Medtr8g047650.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.207023.1.S1_s_at	A	A1TS	POPTR_0007s03460	POPTR_0007s03460 (11)	scaffold_7:1971568-1975551(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207024.1.S1_s_at	A	A1TS	POPTR_0007s03470	POPTR_0007s03470 (11)	scaffold_7:1976477-1976673(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207025.1.S1_a_at	A	A1TA	POPTR_0007s03480	POPTR_0007s03480 (11)	scaffold_7:1981477-1981525(-) (11)//scaffold_7:1981528-1981576(-) (11)//scaffold_7:1981579-1981729(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207025.1.S1_at	A	A1TA	POPTR_0007s03480	POPTR_0007s03480 (11)	scaffold_7:1981290-1981818(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207026.1.S1_at	A	A1TS	POPTR_0007s03500	POPTR_0007s03500 (11)	scaffold_7:2006686-2007049(-) (11)	NA	NA	NA	AT1G58120.1	BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g42834.1	"retrotransposon protein, putative, unclassified"	Medtr4g120990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207027.1.S1_at	A	A1TS	POPTR_0007s03560	POPTR_0007s03560 (11)	scaffold_7:2053281-2054720(-) (11)	NA	NA	NA	AT4G33590.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33600.1); Has 126 Blast hits to 126 proteins in 35 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 21; Plants - 62; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os09g29160.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207028.1.S1_at	A	A1TS	POPTR_0007s03600	POPTR_0007s03600 (11)	scaffold_7:2069984-2070315(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207029.1.S1_at	A	A1TS	POPTR_0007s03640	POPTR_0007s03640 (11)	scaffold_7:2087605-2088130(+) (11)	NA	P13087	Miraculin	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.207030.1.S1_at	A	A1TS	POPTR_0007s03660	POPTR_0007s03660 (11)	scaffold_7:2097221-2097724(+) (11)	NA	Q8VYD4	"Cation/H(+) antiporter 23, chloroplastic"	AT1G05580.1	cation/H+ exchanger 23 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr4g142890.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.207031.1.S1_s_at	A	A1TS	POPTR_0007s03730	POPTR_0007s03730 (11)	scaffold_7:2165824-2166393(+) (11)	NA	Q9LXE3	U-box domain-containing protein 28	AT5G09800.1	ARM repeat superfamily protein 	LOC_Os02g33680.1	"U-box domain containing protein, expressed"	Medtr4g142430.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.207033.1.S1_at	A	A1TS	POPTR_0007s03710	POPTR_0007s03710 (11)	scaffold_7:2135052-2135445(+) (11)	NA	Q6Q4D0	Protein BRUSHY 1	AT3G18730.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g54280.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g142260.1	"Protein BRUSHY 1, related "	NA	GO:0005515|protein binding	NA
PtpAffx.207035.1.S1_at	A	A1TS	POPTR_0007s03740	POPTR_0007s03740 (11)	scaffold_7:2181014-2182720(+) (11)	NA	Q6LA54	Uncharacterized WD repeat-containing protein C3H5.08c	AT1G48870.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g34080.1	"WD-40 repeat family protein, putative, expressed"	Medtr3g143870.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207036.1.S1_at	A	A1TS	POPTR_0007s03750	POPTR_0007s03750 (9)	scaffold_7:2187781-2188438(+) (11)	NA	NA	NA	AT1G43770.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os12g06440.1	expressed protein	Medtr3g143840.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207037.1.S1_at	A	A1TS	POPTR_0007s03780	POPTR_0007s03780 (11)	scaffold_7:2206086-2206561(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os01g61990.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr5g098460.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207039.1.S1_at	A	A1TS	POPTR_0007s03830	POPTR_0007s03830 (11)	scaffold_7:2252045-2252094(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g08700.1	expressed protein	Medtr4g142680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207039.1.S1_s_at	A	A1TS	POPTR_0007s03830	POPTR_0007s03830 (11)	scaffold_7:2252161-2252702(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g08700.1	expressed protein	Medtr4g142680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207040.1.S1_at	A	A1TS	POPTR_0007s03840	POPTR_0007s03840 (11)	scaffold_7:2262205-2262587(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G09330.4	NAC domain containing protein 82 	LOC_Os05g35170.2	"no apical meristem protein, putative, expressed"	Medtr3g143500.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.207041.1.S1_s_at	A	A2TS	POPTR_0007s03860	POPTR_0007s03860 (11)//POPTR_0007s03870 (11)	scaffold_7:2280710-2281424(-) (11)//scaffold_7:2286914-2287625(-) (11)	NA	P99177	Probable cysteine desulfurase	NA	NA	LOC_Os12g08850.1	expressed protein	Medtr4g142640.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207044.1.S1_at	A	A1TS	POPTR_0007s03940	POPTR_0007s03940 (11)	scaffold_7:2343584-2344114(-) (11)	NA	NA	NA	AT5G48920.1	tracheary element differentiation-related 7 	NA	NA	Medtr1g009760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207046.1.S1_at	A	A1TS	POPTR_0007s03950	POPTR_0007s03950 (11)	scaffold_7:2348190-2348478(-) (11)	NA	O81313	Transcription factor IND	AT4G00120.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g01700.1	"basic helix-loop-helix family protein, putative, expressed"	Medtr4g142590.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.207047.1.S1_at	A	A1MS	POPTR_0007s03970	POPTR_0007s03970 (11)	scaffold_7:2366350-2366931(-) (11)	NA	Q9LIH5	Zinc finger CCCH domain-containing protein 38	AT3G18640.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os08g04170.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr3g143650.2	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.207048.1.S1_at	A	A1TS	POPTR_0007s03980	POPTR_0007s03980 (11)	scaffold_7:2381343-2381530(-) (11)	NA	NA	NA	AT3G04740.1	RNA polymerase II transcription mediators 	LOC_Os09g10960.1	"SWP, putative, expressed"	Medtr1g106750.1	"SWP, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207050.1.S1_at	A	A1TS	POPTR_0007s04050	POPTR_0007s04050 (11)	scaffold_7:2419846-2420432(-) (11)	POPTR_0007s02990 (7)	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT1G18760.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g100800.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207051.1.S1_at	A	A2TS	POPTR_0007s04060	POPTR_0007s04060 (11)//POPTR_0007s03000 (10)	scaffold_7:1748870-1749216(+) (10)//scaffold_7:2421304-2421652(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g125220.1	Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.207052.1.S1_at	A	A1TS	POPTR_0007s04080	POPTR_0007s04080 (11)	scaffold_7:2452842-2453468(+) (11)	NA	Q5QJC3	5' exonuclease Apollo	AT1G19025.1	DNA repair metallo-beta-lactamase family protein 	LOC_Os01g65890.1	"DNA repair metallo-beta-lactamase, putative, expressed"	Medtr3g143410.1	DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207053.1.S1_at	A	A1TS	POPTR_0007s04090	POPTR_0007s04090 (11)	scaffold_7:2456969-2457344(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207054.1.S1_at	A	A1TS	POPTR_0007s04140	POPTR_0007s04140 (11)	scaffold_7:2499313-2499739(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G33450.1	myb domain protein 69 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr5g044760.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207055.1.S1_at	A	A1TS	POPTR_0007s04150	POPTR_0007s04150 (11)	scaffold_7:2506521-2507018(+) (11)	NA	NA	NA	AT1G60560.1	SWIM zinc finger family protein 	LOC_Os09g13880.1	"SWIM zinc finger family protein, putative, expressed"	Medtr8g047590.1	"Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.207056.1.S1_at	A	A1TS	POPTR_0007s04170	POPTR_0007s04170 (11)	scaffold_7:2510479-2511032(-) (11)	NA	A7PZL3	Probable polygalacturonase	AT4G33440.1	Pectin lyase-like superfamily protein 	LOC_Os08g01600.1	"polygalacturonase, putative, expressed"	Medtr3g143290.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.207057.1.S1_at	A	A1TS	POPTR_0007s04230	POPTR_0007s04230 (11)	scaffold_7:2551925-2552422(-) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr3g143250.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.207058.1.S1_at	A	A1TS	POPTR_0007s04280	POPTR_0007s04280 (11)	scaffold_7:2589632-2590190(-) (11)	NA	Q9SIT7	Pentatricopeptide repeat-containing protein At2g13600	AT2G13600.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g35610.1	"pentatricopeptide, putative"	Medtr3g143210.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207059.1.S1_at	A	A1TS	POPTR_0007s04290	POPTR_0007s04290 (11)	scaffold_7:2594668-2596640(+) (11)	NA	P60496	Chemocyanin	AT1G17800.1	early nodulin-like protein 22 	LOC_Os03g50160.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g137630.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.207060.1.S1_at	A	A1TS	POPTR_0007s04330	POPTR_0007s04330 (9)	scaffold_7:2642945-2643361(-) (11)	NA	NA	NA	AT5G64020.1	TRICHOME BIREFRINGENCE-LIKE 14 	LOC_Os11g13800.1	expressed protein	Medtr4g143010.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207061.1.S1_at	A	A1TS	POPTR_0007s04340	POPTR_0007s04340 (11)	scaffold_7:2661724-2661994(+) (11)	NA	Q8L7V3	Probable methyltransferase PMT26	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.207061.1.S1_s_at	A	A1TS	POPTR_0007s04340	POPTR_0007s04340 (11)	scaffold_7:2661444-2661913(+) (11)	NA	Q8L7V3	Probable methyltransferase PMT26	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.207062.1.S1_at	A	A1MS	POPTR_0007s04355	POPTR_0007s04355 (11)	scaffold_7:2662897-2663143(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g143060.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207063.1.S1_at	A	A1TS	POPTR_0007s04410	POPTR_0007s04410 (11)	scaffold_7:2733284-2733915(-) (11)	NA	NA	NA	AT4G22530.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g40660.1	"methyltransferase, putative, expressed"	Medtr7g107220.1	Methyltransferase type 11 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207064.1.S1_at	A	A1TS	POPTR_0007s04425	POPTR_0007s04425 (11)	scaffold_7:2738467-2739698(+) (11)	NA	Q8DLF8	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG	AT2G13440.1	glucose-inhibited division family A protein 	LOC_Os01g72980.2	"tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed"	Medtr4g143160.1	Glucose-inhibited division protein A 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207065.1.S1_at	A	A1TS	POPTR_0007s04430	POPTR_0007s04430 (11)	scaffold_7:2741641-2741866(+) (11)	NA	NA	NA	AT4G30770.1	Putative membrane lipoprotein 	LOC_Os11g09030.1	expressed protein	Medtr4g143170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207065.1.S1_s_at	A	A1TS	POPTR_0007s04430	POPTR_0007s04430 (11)	scaffold_7:2741403-2741639(+) (11)	NA	NA	NA	AT4G30770.1	Putative membrane lipoprotein 	LOC_Os11g09030.1	expressed protein	Medtr4g143170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207066.1.S1_at	A	A1TS	POPTR_0007s04440	POPTR_0007s04440 (11)	scaffold_7:2743013-2743339(-) (11)	NA	NA	NA	AT3G22560.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g46250.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g140270.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.207067.1.S1_at	A	A1TS	POPTR_0007s04460	POPTR_0007s04460 (11)	scaffold_7:2758202-2758761(-) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr4g142890.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.207068.1.S1_at	A	A1TS	POPTR_0007s04480	POPTR_0007s04480 (11)	scaffold_7:2769481-2769877(+) (11)	NA	NA	NA	AT1G55860.1	ubiquitin-protein ligase 1 	NA	NA	Medtr4g089520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207068.1.S1_s_at	A	A1TS	POPTR_0007s04480	POPTR_0007s04480 (11)	scaffold_7:2769435-2769998(+) (11)	NA	NA	NA	AT1G55860.1	ubiquitin-protein ligase 1 	NA	NA	Medtr4g089520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207069.1.S1_s_at	A	A1TS	POPTR_0007s04530	POPTR_0007s04530 (10)	scaffold_7:2816214-2816790(+) (11)	NA	Q8RWD6	F-box protein At5g39450	AT5G39450.1	F-box family protein 	LOC_Os08g01430.1	"OsFBX260 - F-box domain containing protein, expressed"	Medtr3g142910.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207071.1.S1_at	A	A1TS	POPTR_0007s04540	POPTR_0007s04540 (11)	scaffold_7:2819523-2819817(+) (11)	NA	NA	NA	AT2G31305.1	inhibitor-3 	LOC_Os05g18774.3	"protein phosphatase 1 regulatory subunit 11, putative, expressed"	Medtr7g100380.1	Protein phosphatase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207072.1.S1_at	A	A1TS	POPTR_0007s04600	POPTR_0007s04600 (10)	scaffold_7:2860935-2862337(+) (11)	NA	NA	NA	AT1G21610.2	wound-responsive family protein 	LOC_Os01g66050.1	"wound-responsive family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207073.1.S1_at	A	A1TS	POPTR_0007s04630	POPTR_0007s04630 (11)	scaffold_7:2872393-2872875(-) (11)	NA	NA	NA	AT2G04220.1	Plant protein of unknown function (DUF868) 	LOC_Os02g10530.1	expressed protein	Medtr3g106810.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207074.1.S1_at	A	A1TS	POPTR_0007s04650	POPTR_0007s04650 (11)	scaffold_7:2882048-2883188(+) (11)	NA	Q8VY52	"PsbP domain-containing protein 2, chloroplastic"	AT2G28605.1	Photosystem II reaction center PsbP family protein 	LOC_Os04g35530.1	expressed protein	AC235665_39.1	Photosystem II oxygen evolving complex protein PsbP AC235665.2 215841-217944 E EGN_Mt090430 200	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.207075.1.S1_at	A	A1TS	POPTR_0007s04660	POPTR_0007s04660 (11)	scaffold_7:2887711-2888381(+) (11)	NA	O60113	Uncharacterized amino-acid permease C15C4.04c	AT2G01170.1	bidirectional amino acid transporter 1 	LOC_Os04g35540.1	"amino acid permease family protein, putative, expressed"	AC235665_40.1	Amino acid/polyamine transporter I AC235665.2 219297-222930 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207076.1.S1_x_at	A	A1MS	POPTR_0007s04730	POPTR_0007s04730 (11)	scaffold_7:2943352-2943897(-) (11)	NA	NA	NA	AT4G33480.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3727 (InterPro:IPR022203); Has 348 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). 	LOC_Os04g59570.2	expressed protein	Medtr4g143310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207077.1.S1_s_at	A	A1TS	POPTR_0007s04750	POPTR_0007s04750 (11)	scaffold_7:2969573-2969854(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.207078.1.S1_at	A	A1TS	POPTR_0007s04760	POPTR_0007s04760 (11)	scaffold_7:2975158-2975716(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207079.1.S1_at	A	A1TS	POPTR_0007s04770	POPTR_0007s04770 (9)	scaffold_7:2977308-2977859(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207080.1.S1_at	A	A1TS	POPTR_0007s04810	POPTR_0007s04810 (11)	scaffold_7:3009075-3009518(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.207081.1.S1_at	A	A1TS	POPTR_0007s04820	POPTR_0007s04820 (11)	scaffold_7:3012828-3013332(+) (11)	NA	Q9FFB8	Cation/H(+) antiporter 3	AT5G22900.1	cation/H+ exchanger 3 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr5g082300.1	Sodium/hydrogen exchanger 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207082.1.S1_at	A	A1TS	POPTR_0007s04850	POPTR_0007s04850 (10)	scaffold_7:3035864-3036452(+) (10)	NA	Q8GXR9	"Probable NADH dehydrogenase, chloroplastic/mitochondrial"	AT5G08740.1	NAD(P)H dehydrogenase C1 	LOC_Os06g11140.1	"pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed"	Medtr4g143960.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.207083.1.S1_at	A	A1TS	POPTR_0007s04860	POPTR_0007s04860 (11)	scaffold_7:3048379-3050729(+) (11)	NA	B2V855	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT5G64440.1	fatty acid amide hydrolase 	LOC_Os12g07150.1	"amidase family protein, putative, expressed"	Medtr4g143970.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.207084.1.S1_at	A	A1TS	POPTR_0007s04890	POPTR_0007s04890 (10)	scaffold_7:3081054-3081609(+) (10)	NA	NA	NA	AT5G63720.1	kokopelli 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207085.1.S1_at	A	A1TS	POPTR_0007s04900	POPTR_0007s04900 (11)	scaffold_7:3084563-3087104(-) (11)	NA	Q8L4S2	Magnesium transporter MRS2-F	AT3G19640.1	magnesium transporter 4 	LOC_Os01g68040.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr4g144110.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207086.1.S1_at	A	A1TS	POPTR_0007s04910	POPTR_0007s04910 (11)	scaffold_7:3095436-3097131(-) (11)	NA	Q8L4S2	Magnesium transporter MRS2-F	AT3G19640.1	magnesium transporter 4 	LOC_Os01g68040.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr4g144110.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207087.1.S1_s_at	A	A1TS	POPTR_0007s04920	POPTR_0007s04920 (11)	scaffold_7:3107191-3107878(+) (11)	NA	Q39017	Diacylglycerol kinase 1	AT5G63770.1	diacylglycerol kinase 2 	LOC_Os12g12260.1	"diacylglycerol kinase 1, putative, expressed"	Medtr4g144130.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region; Protein kinase C, phorbol ester/diacylglycerol binding "	GO:0023033|signaling pathway||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.207090.1.S1_at	A	A1TS	POPTR_0007s04950	POPTR_0007s04950 (11)	scaffold_7:3148834-3149815(+) (11)	NA	Q9C7T4	Transcription factor bHLH96	AT1G72210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os10g23050.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr3g150170.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.207091.1.S1_at	A	A1TS	POPTR_0007s04970	POPTR_0007s04970 (11)	scaffold_7:3159231-3159797(+) (11)	NA	NA	NA	AT2G46550.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3). 	NA	NA	Medtr3g102260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207093.1.S1_at	A	A1TS	POPTR_0007s05000	POPTR_0007s05000 (11)	scaffold_7:3178246-3178408(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207094.1.S1_at	A	A1TS	POPTR_0007s05030	POPTR_0007s05030 (11)	scaffold_7:3225020-3225359(-) (11)	NA	Q54TM2	LMBR1 domain-containing protein 2 homolog B	AT5G65290.1	LMBR1-like membrane protein 	LOC_Os02g52160.1	"LMBR1 integral membrane protein, putative, expressed"	Medtr3g102140.1	LMBR1-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207095.1.S1_at	A	A1TS	POPTR_0007s05040	POPTR_0007s05040 (11)	scaffold_7:3249537-3250297(+) (11)	NA	Q8N9R8	Protein SCAI	AT4G40050.1	Protein of unknown function (DUF3550/UPF0682) 	LOC_Os09g29470.1	"AGAP005770-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207096.1.S1_at	A	A1TS	POPTR_0007s05060	POPTR_0007s05060 (11)	scaffold_7:3263708-3264285(+) (11)	NA	NA	NA	AT4G40020.1	Myosin heavy chain-related protein 	LOC_Os08g37500.1	expressed protein	Medtr3g102090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207097.1.S1_at	A	A1TS	POPTR_0007s05130	POPTR_0007s05130 (10)	scaffold_7:3321239-3321962(+) (11)	NA	Q8RXN0	ABC transporter G family member 11	AT1G17840.1	white-brown complex homolog protein 11 	LOC_Os09g29660.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g120680.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207098.1.S1_at	A	A1TS	POPTR_0007s05140	POPTR_0007s05140 (11)	scaffold_7:3326915-3327660(+) (11)	NA	O14327	Polyadenylate-binding protein 2	AT5G10350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g120660.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.207099.1.S1_at	A	A1TS	POPTR_0007s05170	POPTR_0007s05170 (11)	scaffold_7:3336480-3338027(+) (11)	NA	NA	NA	AT5G65250.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g37820.1	expressed protein	Medtr3g101950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207100.1.S1_at	A	A1TS	POPTR_0007s05190	POPTR_0007s05190 (11)	scaffold_7:3347969-3348421(+) (11)	NA	Q9LFT5	EPIDERMAL PATTERNING FACTOR-like protein 1	AT5G10310.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g51950.1	expressed protein	Medtr3g101900.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207101.1.S1_at	A	A1TS	POPTR_0007s05240	POPTR_0007s05240 (11)	scaffold_7:3374009-3374433(-) (11)	NA	Q8DKR7	Chaperone protein dnaJ	AT2G22360.1	DNAJ heat shock family protein 	LOC_Os05g26926.1	"chaperone protein dnaJ, putative, expressed"	Medtr3g101890.1	Chaperone DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.207102.1.S1_at	A	A1TS	POPTR_0007s05260	POPTR_0007s05260 (11)	scaffold_7:3387279-3387412(+) (11)	NA	NA	NA	AT1G10380.1	Putative membrane lipoprotein 	LOC_Os06g25950.1	expressed protein	Medtr5g038340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207104.1.S1_at	A	A1TS	POPTR_0007s05310	POPTR_0007s05310 (11)	scaffold_7:3416494-3417300(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207105.1.S1_at	A	A1TS	POPTR_0007s05320	POPTR_0007s05320 (10)	scaffold_7:3419619-3419935(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207106.1.S1_at	A	A1TS	POPTR_0007s05330	POPTR_0007s05330 (11)	scaffold_7:3422366-3422700(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207107.1.S1_s_at	A	A1TS	POPTR_0007s05340	POPTR_0007s05340 (11)	scaffold_7:3426903-3427247(-) (11)	NA	Q9C8N5	Protein SENSITIVE TO PROTON RHIZOTOXICITY 1	AT1G34370.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os02g36360.3	"ZOS2-11 - C2H2 zinc finger protein, expressed"	Medtr3g101820.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.207108.1.S1_at	A	A1TS	POPTR_0007s05360	POPTR_0007s05360 (11)	scaffold_7:3454492-3454824(-) (11)	NA	Q8GWP0	Transcription factor MYB39	AT5G10280.1	myb domain protein 92 	LOC_Os06g11780.1	"MYB family transcription factor, putative"	Medtr4g107720.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207108.1.S1_x_at	A	A1TS	POPTR_0007s05360	POPTR_0007s05360 (10)	scaffold_7:3454492-3455091(-) (11)	NA	Q8GWP0	Transcription factor MYB39	AT5G10280.1	myb domain protein 92 	LOC_Os06g11780.1	"MYB family transcription factor, putative"	Medtr4g107720.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207110.1.S1_at	A	A1TS	POPTR_0007s05420	POPTR_0007s05420 (10)	scaffold_7:3507645-3510466(-) (11)	NA	Q8BMD8	Calcium-binding mitochondrial carrier protein SCaMC-1	AT5G64970.1	Mitochondrial substrate carrier family protein 	LOC_Os03g09110.1	"mitochondrial carrier protein, putative, expressed"	Medtr1g013520.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207111.1.S1_x_at	A	A1TS	POPTR_0007s05460	POPTR_0007s05460 (10)	scaffold_7:3545286-3546015(-) (10)	NA	Q6YC49	UDP-N-acetylglucosamine transporter	AT5G65000.1	Nucleotide-sugar transporter family protein 	LOC_Os02g36390.4	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr5g106860.1	Nucleotide-sugar transporter 	NA	NA	GO:0016020|membrane
PtpAffx.207112.1.S1_at	A	A1TS	POPTR_0007s05480	POPTR_0007s05480 (11)	scaffold_7:3562105-3562289(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207113.1.S1_at	A	A1TS	POPTR_0007s05550	POPTR_0007s05550 (10)	scaffold_7:3625263-3625328(-) (10)	NA	Q3ZBR5	Tetratricopeptide repeat protein 1	AT5G10200.1	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein 	LOC_Os05g34820.1	expressed protein	AC232874_13.1	Tetratricopeptide-like helical AC232874.1 44658-42406 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207113.1.S1_s_at	A	A2TS	POPTR_0005s07790	POPTR_0005s07790 (11)//POPTR_0007s05550 (11)	scaffold_5:5337761-5337918(-) (11)//scaffold_7:3624988-3625145(-) (11)	NA	Q3ZBR5	Tetratricopeptide repeat protein 1	AT5G10200.1	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein 	LOC_Os05g34820.1	expressed protein	AC232874_13.1	Tetratricopeptide-like helical AC232874.1 44658-42406 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207115.1.S1_at	A	A1MS	POPTR_0007s05620	POPTR_0007s05620 (10)	scaffold_7:3690182-3690833(+) (10)	NA	Q9FJP9	"Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial"	AT5G65165.1	succinate dehydrogenase 2-3 	LOC_Os09g20440.1	succinate dehydrogenase and fumarate reductase iron-sulfur protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207116.1.S1_at	A	A1TS	POPTR_0007s05640	POPTR_0007s05640 (11)	scaffold_7:3701428-3702665(+) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT5G65160.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g51730.1	"dnaJ homolog subfamily C member 7, putative, expressed"	Medtr3g101390.1	Tetratricopeptide-like helical; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207117.1.S1_at	A	A1TS	POPTR_0007s05680	POPTR_0007s05680 (11)	scaffold_7:3809849-3810206(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207118.1.S1_at	A	A1TS	POPTR_0007s05700	POPTR_0007s05700 (11)	scaffold_7:3837242-3837686(-) (11)	NA	NA	NA	AT5G65120.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g51640.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207119.1.S1_at	A	A1TS	POPTR_0007s05740	POPTR_0007s05740 (11)	scaffold_7:3868376-3869931(-) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT5G65090.1	DNAse I-like superfamily protein 	LOC_Os02g51600.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr4g140410.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207120.1.S1_at	A	A1TS	POPTR_0007s05760	POPTR_0007s05760 (11)	scaffold_7:3885754-3886266(+) (11)	NA	Q9FKC8	Probable S-adenosylmethionine-dependent methyltransferase At5g37990	AT1G15125.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g56950.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.207121.1.S1_s_at	A	A1TS	POPTR_0007s05840	POPTR_0007s05840 (11)	scaffold_7:3983919-3984393(+) (11)	NA	Q9SDN0	"Chaperone protein dnaJ 20, chloroplastic"	AT4G13830.2	DNAJ-like 20 	LOC_Os01g01160.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g008610.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.207122.1.S1_at	A	A1TS	POPTR_0007s05860	POPTR_0007s05860 (11)	scaffold_7:4002027-4003676(+) (11)	NA	O04722	Sulfate transporter 2.1	AT5G10180.1	slufate transporter 2;1 	LOC_Os03g09940.1	"sulfate transporter, putative, expressed"	Medtr3g101160.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.207123.1.S1_at	A	A1TS	POPTR_0007s05870	POPTR_0007s05870 (11)	scaffold_7:4010641-4011421(-) (11)	NA	NA	NA	AT4G39810.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os10g26730.1	"exonuclease, putative, expressed"	Medtr4g140330.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207124.1.S1_at	A	A1TS	POPTR_0007s05880	POPTR_0007s05880 (10)	scaffold_7:4015647-4016473(-) (10)	NA	Q9SIE1	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase	AT2G22250.3	aspartate aminotransferase 	LOC_Os01g65090.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g140320.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.207126.1.S1_at	A	A1MS	POPTR_0007s06030	POPTR_0007s06030 (10)	scaffold_7:4186692-4186966(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207127.1.S1_at	A	A1MS	POPTR_0007s06060	POPTR_0007s06060 (10)	scaffold_7:4210940-4211140(+) (10)	POPTR_0007s06070 (8)	Q9CSU0	Regulation of nuclear pre-mRNA domain-containing protein 1B	AT5G10060.1	ENTH/VHS family protein 	LOC_Os04g54420.1	"protein of unknown function, DUF618 domain containing protein, expressed"	Medtr3g101010.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207127.1.S1_s_at	A	A2MS	POPTR_0007s06060	POPTR_0007s06060 (11)//POPTR_0007s06070 (11)	scaffold_7:4211173-4211603(+) (11)	NA	Q9CSU0	Regulation of nuclear pre-mRNA domain-containing protein 1B	AT5G10060.1	ENTH/VHS family protein 	LOC_Os04g54420.1	"protein of unknown function, DUF618 domain containing protein, expressed"	Medtr3g101010.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207128.1.S1_at	A	A1TS	POPTR_0007s06100	POPTR_0007s06100 (11)	scaffold_7:4227633-4227886(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207129.1.S1_at	A	A1TS	POPTR_0007s06130	POPTR_0007s06130 (11)	scaffold_7:4277618-4277955(+) (11)	NA	Q9ZT50	E3 ubiquitin-protein ligase RHA2A	AT1G15100.1	RING-H2 finger A2A 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g100920.1	"Zinc finger, RING-type "	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	NA	GO:0005634|nucleus
PtpAffx.207130.1.S1_at	A	A1TS	POPTR_0007s06140	POPTR_0007s06140 (11)	scaffold_7:4287885-4288298(+) (11)	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G01150.1	RING-H2 finger protein 2B 	LOC_Os05g32350.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g100920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207131.1.S1_at	A	A1TS	POPTR_0007s06160	POPTR_0007s06160 (11)	scaffold_7:4302363-4304488(-) (11)	NA	NA	NA	AT2G22120.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os11g39130.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g100910.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207132.1.S1_at	A	A1TS	POPTR_0007s06200	POPTR_0007s06200 (11)	scaffold_7:4369035-4369566(-) (11)	NA	Q9SHZ8	Pentatricopeptide repeat-containing protein At2g22070	AT2G22070.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os03g56400.1	"pentatricopeptide, putative, expressed"	Medtr8g077070.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207133.1.S1_at	A	A1TS	POPTR_0007s06250	POPTR_0007s06250 (11)	scaffold_7:4403910-4404746(-) (11)//scaffold_7:4444726-4444818(-) (9)	NA	O00410	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207140.1.S1_s_at	A	A7TS	POPTR_0007s06260	POPTR_0007s06390 (11)//POPTR_0007s06340 (11)//POPTR_0007s06400 (11)//POPTR_0007s06410 (11)//POPTR_0007s06370 (11)//POPTR_0007s06360 (11)//POPTR_0007s06260 (11)	scaffold_7:4417130-4417167(+) (11)//scaffold_7:4540789-4540826(+) (11)//scaffold_7:4560812-4560849(+) (11)//scaffold_7:4572464-4572501(+) (11)//scaffold_7:4702689-4702726(+) (11)//scaffold_7:4723063-4723100(+) (11)//scaffold_7:4741021-4741058(+) (11)	NA	P24465	Cytochrome P450 71A1	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os09g26970.1	"retrotransposon protein, putative, unclassified"	Medtr2g078060.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.207145.1.S1_at	A	A1TS	POPTR_0007s06430	POPTR_0007s06430 (11)	scaffold_7:4747114-4747535(-) (11)	NA	Q0WR59	Probable inactive receptor kinase At5g10020	AT5G10020.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g43350.1	expressed protein	Medtr3g145010.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.207145.1.S1_x_at	A	A1TS	POPTR_0007s06430	POPTR_0007s06430 (11)	scaffold_7:4747224-4747566(-) (11)	NA	Q0WR59	Probable inactive receptor kinase At5g10020	AT5G10020.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g43350.1	expressed protein	Medtr3g145010.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.207146.1.S1_at	A	A1TS	POPTR_0007s06440	POPTR_0007s06440 (11)	scaffold_7:4777219-4777446(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207147.1.S1_at	A	A1TS	POPTR_0007s06510	POPTR_0007s06510 (11)	scaffold_7:4886263-4888090(+) (11)	NA	Q9SIZ8	E3 ubiquitin-protein ligase RKP	AT2G22010.1	related to KPC1 	LOC_Os07g43380.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g144940.1	"Zinc finger, RING-type; B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207148.1.S1_at	A	A1TS	POPTR_0007s06520	POPTR_0007s06520 (11)	scaffold_7:4898045-4899423(+) (11)	NA	NA	NA	AT5G09995.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g12129.1	expressed protein	Medtr3g144930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207150.1.S1_at	A	A1TS	POPTR_0007s06540	POPTR_0007s06540 (11)	scaffold_7:4925080-4925240(+) (11)	NA	NA	NA	AT2G21970.1	stress enhanced protein 2 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207151.1.S1_at	A	A1MS	POPTR_0006s17780	POPTR_0006s17780 (11)	scaffold_6:15954116-15955319(+) (11)	NA	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207152.1.S1_at	A	A1TS	POPTR_0007s06560	POPTR_0007s06560 (10)	scaffold_6:15948412-15949090(+) (11)//scaffold_7:4954832-4955521(+) (9)	NA	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207153.1.S1_s_at	A	A1TS	POPTR_0007s06560	POPTR_0007s06560 (11)	scaffold_7:4965435-4965546(+) (11)	NA	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207154.1.S1_at	A	A1TS	POPTR_0007s06580	POPTR_0007s06580 (11)	scaffold_7:4996866-4997457(+) (11)	NA	Q9SJ04	F-box/kelch-repeat protein SKIP6	AT2G21950.1	SKP1 interacting partner 6 	LOC_Os07g47650.1	"OsFBK19 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g144840.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207156.1.S1_at	A	A1TS	POPTR_0007s06670	POPTR_0007s06670 (11)	scaffold_7:5066935-5067482(-) (11)	NA	Q9FMY1	Cytochrome P450 86B1	AT4G39490.1	"cytochrome P450, family 96, subfamily A, polypeptide 10 "	LOC_Os03g04650.1	"cytochrome P450 protein, putative, expressed"	Medtr4g137010.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.207157.1.S1_at	A	A1TS	POPTR_0007s06680	POPTR_0007s06680 (11)	scaffold_7:5076713-5077087(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207158.1.S1_at	A	A1TS	POPTR_0007s06730	POPTR_0007s06730 (11)	scaffold_7:5113768-5114905(+) (11)	NA	Q41640	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.207159.1.S1_at	A	A1TS	POPTR_0007s06780	POPTR_0007s06780 (11)	scaffold_7:5143614-5144176(+) (11)	NA	Q9FZ19	Putative pentatricopeptide repeat-containing protein At1g02420	AT1G02420.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g11020.1	"PPR repeat containing protein, expressed"	Medtr1g106200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207160.1.S1_at	A	A1TS	POPTR_0007s06790	POPTR_0007s06790 (11)	scaffold_7:5145847-5146078(-) (11)	NA	Q9XIK4	UPF0202 protein At1g10490	AT1G10490.1	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) 	LOC_Os12g07300.1	"N-acetyltransferase 10, putative, expressed"	Medtr2g033580.1	Region of unknown function DUF1726 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207161.1.S1_at	A	A1TS	POPTR_0007s06800	POPTR_0007s06800 (11)	scaffold_7:5157487-5160763(+) (11)	NA	NA	NA	AT4G39470.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207163.1.S1_at	A	A1TS	POPTR_0007s06820	POPTR_0007s06820 (11)	scaffold_7:5166872-5167405(-) (11)	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT5G64790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os06g39060.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g141090.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.207163.1.S1_s_at	A	A2TS	POPTR_0002s00300	POPTR_0002s00300 (11)//POPTR_0007s06820 (11)	scaffold_2:55132-55725(-) (11)//scaffold_7:5166839-5167382(-) (11)	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT2G19440.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os06g39060.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g100300.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207164.1.S1_at	A	A1TS	POPTR_0007s06840	POPTR_0007s06840 (10)	scaffold_7:5177037-5177517(-) (11)	NA	Q55GD2	Leucine-rich repeat-containing protein DDB_G0268328	AT4G39420.1	unknown protein; Has 46 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g08750.2	expressed protein	Medtr4g141130.1	Cyclic nucleotide-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207165.1.S1_at	A	A1TS	POPTR_0007s06840	POPTR_0007s06840 (11)	scaffold_7:5185892-5189021(-) (11)	NA	Q55GD2	Leucine-rich repeat-containing protein DDB_G0268328	AT4G39420.1	unknown protein; Has 46 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g08750.2	expressed protein	Medtr4g141130.1	Cyclic nucleotide-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207166.1.S1_at	A	A1TS	POPTR_0007s06840	POPTR_0007s06840 (9)	scaffold_7:5190623-5191299(-) (9)	NA	Q55GD2	Leucine-rich repeat-containing protein DDB_G0268328	AT4G39420.1	unknown protein; Has 46 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g08750.2	expressed protein	Medtr4g141130.1	Cyclic nucleotide-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207169.1.S1_at	A	A1TS	POPTR_0007s06910	POPTR_0007s06910 (11)	scaffold_7:5219791-5220146(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g014420.1	"CK25, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207170.1.S1_at	A	A1TS	POPTR_0007s06920	POPTR_0007s06920 (11)	scaffold_7:5246137-5246679(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207171.1.S1_at	A	A1TS	POPTR_0007s06960	POPTR_0007s06960 (11)	scaffold_7:5326019-5327768(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207172.1.S1_at	A	A1TS	POPTR_0007s06970	POPTR_0007s06970 (11)	scaffold_7:5331755-5332750(+) (11)	NA	Q8LJT8	TSL-kinase interacting protein 1	AT4G39380.1	BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits to 74 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g13790.2	"myb/SANT domain protein, putative, expressed"	Medtr4g141280.1	"myb/SANT domain protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207173.1.S1_at	A	A1TS	POPTR_0007s06980	POPTR_0007s06980 (11)	scaffold_7:5334800-5335670(+) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr1g124770.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207174.1.S1_at	A	A1TS	POPTR_0007s07000	POPTR_0007s07000 (10)	scaffold_7:5341634-5343128(-) (10)	NA	NA	NA	AT2G22140.1	essential meiotic endonuclease 1B 	LOC_Os04g55500.1	expressed protein	Medtr4g141320.1	hypothetical protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0005515|protein binding||GO:0004518|nuclease activity||GO:0003677|DNA binding	NA
PtpAffx.207175.1.S1_at	A	A1TS	POPTR_0007s07000	POPTR_0007s07000 (11)	scaffold_7:5347830-5348383(-) (11)	NA	NA	NA	AT2G22140.1	essential meiotic endonuclease 1B 	LOC_Os04g55500.1	expressed protein	Medtr4g141320.1	hypothetical protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0005515|protein binding||GO:0004518|nuclease activity||GO:0003677|DNA binding	NA
PtpAffx.207176.1.S1_at	A	A1TS	POPTR_0007s07050	POPTR_0007s07050 (10)	scaffold_7:5390553-5391786(+) (11)	NA	Q9SB58	Probable S-acyltransferase At4g24630	AT4G24630.1	DHHC-type zinc finger family protein 	LOC_Os05g36090.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr1g124850.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.207177.1.S1_at	A	A1TS	POPTR_0007s07070	POPTR_0007s07070 (11)	scaffold_7:5396368-5396776(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207178.1.S1_at	A	A1TS	POPTR_0007s07140	POPTR_0007s07140 (11)	scaffold_7:5480809-5483231(-) (11)	NA	Q28BT4	Calumenin	AT5G08580.1	Calcium-binding EF hand family protein 	LOC_Os02g12880.4	"calcium-binding EF hand family protein, putative, expressed"	Medtr8g024400.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207180.1.S1_at	A	A1TS	POPTR_0007s07210	POPTR_0007s07210 (11)	scaffold_7:5546386-5546833(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207183.1.S1_at	A	A1TS	POPTR_0007s07330	POPTR_0007s07330 (11)	scaffold_7:5686179-5686615(+) (11)	NA	Q9FJR1	Peroxidase 65	AT5G47000.1	Peroxidase superfamily protein 	LOC_Os02g50770.1	"peroxidase precursor, putative, expressed"	Medtr6g008740.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.207184.1.S1_at	A	A1TS	POPTR_0007s07340	POPTR_0007s07340 (11)	scaffold_7:5687735-5688648(+) (11)	NA	Q96509	Peroxidase 55	AT5G14130.1	Peroxidase superfamily protein 	LOC_Os06g13050.1	"peroxidase family protein, expressed"	Medtr6g008740.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207185.1.S1_at	A	A1TS	POPTR_0007s07440	POPTR_0007s07440 (11)	scaffold_7:5798613-5798925(+) (11)	NA	Q7X7A9	F-box protein At1g11270	AT1G11270.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr2g033620.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207186.1.S1_at	A	A1TS	POPTR_0007s07460	POPTR_0007s07460 (11)	scaffold_7:5815048-5815570(-) (11)	NA	Q9FYE2	Protein PHYTOCHROME KINASE SUBSTRATE 4	AT5G04190.1	phytochrome kinase substrate 4 	LOC_Os01g15990.1	expressed protein	Medtr7g105020.1	"phytochrome kinase substrate 1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207187.1.S1_at	A	A1TS	POPTR_0007s07480	POPTR_0007s07480 (11)	scaffold_7:5824486-5825040(-) (11)	NA	Q9FMX2	Transcription factor TCP7	AT5G23280.1	TCP family transcription factor  	LOC_Os12g07480.1	"TCP family transcription factor, putative, expressed"	Medtr1g143870.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207189.1.S1_at	A	A1TS	POPTR_0007s07500	POPTR_0007s07500 (11)	scaffold_7:5878514-5878745(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207190.1.S1_s_at	A	A1TS	POPTR_0007s07560	POPTR_0007s07560 (11)	scaffold_7:5923705-5924147(+) (11)	NA	NA	NA	AT3G19920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits to 217 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g009020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207191.1.S1_at	A	A2TS	POPTR_0007s07590	POPTR_0007s07590 (11)//POPTR_0482s00200 (10)	scaffold_482:12661-12760(+) (10)//scaffold_7:5959264-5959368(+) (11)	NA	P31414	Pyrophosphate-energized vacuolar membrane proton pump 1	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207192.1.S1_at	A	A1TS	POPTR_0007s07610	POPTR_0007s07610 (11)	scaffold_7:5971696-5972184(+) (11)	NA	P0C8Q7	Pentatricopeptide repeat-containing protein At5g08305	AT5G08305.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g30590.2	"pentatricopeptide, putative"	Medtr1g143520.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207193.1.S1_at	A	A1TS	POPTR_0007s07620	POPTR_0007s07620 (11)	scaffold_7:5973517-5974954(-) (11)	NA	Q8RYD9	Protein TRANSPARENT TESTA 16	AT5G23260.2	K-box region and MADS-box transcription factor family protein  	LOC_Os02g07430.2	"OsMADS29 - MADS-box family gene with MIKCc type-box, expressed"	Medtr1g046070.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.207194.1.S1_at	A	A1TS	POPTR_0007s07645	POPTR_0007s07645 (11)	scaffold_7:6026016-6026128(+) (11)	NA	P83877	Thioredoxin-like protein 4A	AT5G08290.1	"mRNA splicing factor, thioredoxin-like U5 snRNP "	LOC_Os10g34520.1	"mitosis protein dim1, putative, expressed"	Medtr1g065930.1	Thioredoxin domain 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207196.1.S1_at	A	A2TS	POPTR_0007s07720	POPTR_0175s00200 (11)//POPTR_0007s07720 (11)	scaffold_175:27742-28249(+) (11)//scaffold_7:6138536-6139043(+) (11)	NA	Q9FMY4	Uncharacterized protein At5g23160	AT5G08240.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23160.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207197.1.S1_at	A	A1TS	POPTR_0007s07780	POPTR_0007s07780 (10)	scaffold_7:6196513-6198617(-) (10)	NA	O82660	"Photosystem II stability/assembly factor HCF136, chloroplastic"	AT5G23120.1	"photosystem II stability/assembly factor, chloroplast (HCF136) "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207199.1.S1_at	A	A1TS	POPTR_0007s07790	POPTR_0007s07790 (11)	scaffold_7:6219415-6220208(+) (11)	NA	Q9M995	Endoglucanase 5	AT1G48930.1	glycosyl hydrolase 9C1 	LOC_Os04g57860.1	"endoglucanase precursor, putative, expressed"	Medtr4g101190.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0030246|carbohydrate binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0005576|extracellular region
PtpAffx.2072.1.A1_a_at	A	A1TS	POPTR_0001s27120	POPTR_0001s27120 (10)	scaffold_1:26070977-26071010(+) (10)	NA	P30182	DNA topoisomerase 2	AT3G23890.2	topoisomerase II 	LOC_Os02g47150.1	"DNA topoisomerase 2, putative, expressed"	Medtr3g030000.1	DNA gyrase B; ; ; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0005524|ATP binding	GO:0005694|chromosome
PtpAffx.207200.1.S1_at	A	A1TS	POPTR_0007s07840	POPTR_0007s07840 (11)	scaffold_7:6273374-6273877(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207201.1.S1_at	A	A1TS	POPTR_0007s07880	POPTR_0007s07880 (11)	scaffold_7:6333932-6334299(-) (11)	NA	NA	NA	AT3G19780.1	"LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32 species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os10g34390.1	expressed protein	Medtr4g101420.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207202.1.S1_at	A	A1TS	POPTR_0007s07890	POPTR_0007s07890 (9)	scaffold_7:6363657-6364827(+) (10)	NA	P36428	Alanyl-tRNA synthetase	AT1G50200.1	Alanyl-tRNA synthetase 	LOC_Os10g10244.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr4g101440.2	"Alanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207203.1.S1_at	A	A1TS	POPTR_0007s07900	POPTR_0007s07900 (11)	scaffold_7:6381047-6382951(+) (11)	NA	Q8T2I8	Serine/threonine-protein kinase sepA	AT3G13530.1	mitogen-activated protein kinase kinase kinase 7 	LOC_Os04g56530.1	"STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g100710.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207204.1.S1_at	A	A1TS	POPTR_0007s07900	POPTR_0007s07900 (11)	scaffold_7:6385506-6385922(+) (11)	NA	Q8T2I8	Serine/threonine-protein kinase sepA	AT3G13530.1	mitogen-activated protein kinase kinase kinase 7 	LOC_Os04g56530.1	"STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g100710.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207205.1.S1_s_at	A	A1TS	POPTR_0007s07920	POPTR_0007s07920 (10)	scaffold_7:6423693-6425823(-) (11)	NA	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT3G19740.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g12160.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g101160.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.207206.1.S1_at	A	A1TS	POPTR_0007s07930	POPTR_0007s07930 (10)	scaffold_7:6434040-6434787(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207207.1.S1_at	A	A1TS	POPTR_0007s07940	POPTR_0007s07940 (11)	scaffold_7:6437019-6437811(-) (11)	NA	NA	NA	AT3G19740.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g12160.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g101160.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207208.1.S1_at	A	A1TS	POPTR_0007s07950	POPTR_0007s07950 (10)	scaffold_7:6443104-6443427(+) (10)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207209.1.S1_at	A	A1TS	POPTR_0007s07990	POPTR_0007s07990 (10)	scaffold_7:6468696-6469170(-) (11)	NA	P18160	Dual specificity protein kinase pyk1	AT1G79570.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os07g25680.1	"protein kinase domain containing protein, expressed"	Medtr1g111680.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207210.1.S1_at	A	A1TS	POPTR_0007s07990	POPTR_0007s07990 (11)	scaffold_7:6470622-6470826(-) (11)	NA	P18160	Dual specificity protein kinase pyk1	AT1G79570.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os07g25680.1	"protein kinase domain containing protein, expressed"	Medtr1g111680.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207211.1.S1_at	A	A1TS	POPTR_0007s08040	POPTR_0007s08040 (11)	scaffold_7:6540892-6541463(-) (11)	NA	NA	NA	AT1G79220.1	Mitochondrial transcription termination factor family protein 	LOC_Os02g51450.2	"mTERF family protein, expressed"	Medtr8g012590.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207212.1.S1_at	A	A1TS	POPTR_0007s08050	POPTR_0007s08050 (10)	scaffold_7:6551456-6551688(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207213.1.S1_at	A	A1TS	POPTR_0007s08060	POPTR_0007s08060 (11)	scaffold_7:6553115-6553703(-) (11)	NA	Q9LT48	Pentatricopeptide repeat-containing protein At3g20730	AT3G20730.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g53630.1	"pentatricopeptide, putative, expressed"	Medtr4g134960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207214.1.S1_at	A	A1TS	POPTR_0007s08120	POPTR_0007s08120 (11)	scaffold_7:6590891-6591410(-) (11)	NA	P83326	Pectinesterase inhibitor	AT4G00872.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	NA	NA	Medtr3g143630.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.207215.1.S1_s_at	A	A1TS	POPTR_0007s08130	POPTR_0007s08130 (11)	scaffold_7:6598822-6599546(+) (11)	NA	Q652J4	Probable potassium transporter 13	AT2G30070.1	potassium transporter 1 	LOC_Os06g45940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207216.1.S1_s_at	A	A1TS	POPTR_0007s08140	POPTR_0007s08140 (11)	scaffold_7:6605739-6606227(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207220.1.S1_at	A	A1TS	POPTR_0007s08160	POPTR_0007s08160 (11)	scaffold_7:6621517-6622306(-) (11)	NA	C0LGH2	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	AT1G56130.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os04g52600.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207221.1.S1_at	A	A1TS	POPTR_0007s08170	POPTR_0007s08170 (11)	scaffold_7:6704348-6704694(+) (11)	NA	NA	NA	AT3G12830.1	SAUR-like auxin-responsive protein family  	LOC_Os03g45800.1	OsSAUR14 - Auxin-responsive SAUR gene family member	Medtr1g010150.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207222.1.S1_at	A	A1TS	POPTR_0007s08180	POPTR_0007s08180 (11)	scaffold_7:6727905-6728415(-) (11)	NA	NA	NA	AT1G79190.1	ARM repeat superfamily protein 	LOC_Os10g42510.1	expressed protein	Medtr1g046550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207223.1.S1_at	A	A1TS	POPTR_0007s08190	POPTR_0007s08190 (11)	scaffold_7:6755746-6757731(-) (11)	NA	P20024	Myb-related protein Zm1	AT1G79180.1	myb domain protein 63 	LOC_Os02g46780.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207223.1.S1_x_at	A	A1TS	POPTR_0007s08190	POPTR_0007s08190 (11)	scaffold_7:6755746-6757731(-) (11)	NA	P20024	Myb-related protein Zm1	AT1G79180.1	myb domain protein 63 	LOC_Os02g46780.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207224.1.S1_at	A	A1TS	POPTR_0007s08200	POPTR_0007s08200 (11)	scaffold_7:6766829-6768406(-) (11)	NA	P0C031	Ubiquitin-NEDD8-like protein RUB2	AT1G31340.1	related to ubiquitin 1 	LOC_Os06g44080.1	"ubiquitin family protein, putative, expressed"	Medtr5g100010.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207225.1.S1_at	A	A1TS	POPTR_0007s08240	POPTR_0007s08240 (11)	scaffold_7:6834418-6834740(-) (11)	NA	O81755	Putative Peroxidase 48	AT4G33870.1	Peroxidase superfamily protein 	LOC_Os01g51550.1	peroxidase family protein	Medtr4g009100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.207226.1.S1_at	A	A1TS	POPTR_0007s08250	POPTR_0007s08250 (11)	scaffold_7:6843061-6843630(+) (11)	NA	Q9FKE6	Cyclin-T1-5	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207226.1.S1_x_at	A	A1TS	POPTR_0007s08250	POPTR_0007s08250 (11)	scaffold_7:6843062-6843645(+) (11)	NA	Q9FKE6	Cyclin-T1-5	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207227.1.S1_at	A	A1TS	POPTR_0007s08260	POPTR_0007s08260 (11)	scaffold_7:6844780-6845684(-) (11)	NA	NA	NA	AT1G53720.1	cyclophilin 59 	LOC_Os06g45910.1	"peptidyl-prolyl cis-trans isomerase-like 4, putative, expressed"	Medtr6g028110.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type; Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.207228.1.S1_at	A	A1MS	POPTR_0007s08280	POPTR_0007s08280 (9)	scaffold_7:6876046-6876970(+) (10)	NA	NA	NA	AT3G12890.1	activator of spomin::LUC2 	LOC_Os01g61900.1	"CCT motif family protein, expressed"	Medtr2g087960.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207229.1.S1_at	A	A1TS	POPTR_0007s08300	POPTR_0007s08300 (11)	scaffold_7:6964943-6966115(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207230.1.S1_at	A	A1MS	POPTR_0007s08320	POPTR_0007s08320 (10)	scaffold_7:6980549-6981328(+) (10)	NA	NA	NA	AT3G12900.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	NA	NA	Medtr2g088040.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207231.1.S1_at	A	A1MS	POPTR_0007s08320	POPTR_0007s08320 (11)	scaffold_7:6981776-6982009(+) (11)	NA	NA	NA	AT3G12900.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	NA	NA	Medtr2g088040.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207232.1.S1_at	A	A1TS	POPTR_0007s08330	POPTR_0007s08330 (11)	scaffold_7:6996589-6996958(+) (11)	NA	Q8LGM7	Molybdenum cofactor sulfurase	AT1G16540.1	molybdenum cofactor sulfurase (LOS5) (ABA3) 	LOC_Os06g45860.1	"molybdenum cofactor sulfurase, putative, expressed"	Medtr4g032080.1	"Aminotransferase, class V; MOSC; MOSC, N-terminal beta barrel; "	NA	GO:0003824|catalytic activity||GO:0030151|molybdenum ion binding||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.207233.1.S1_at	A	A1MS	POPTR_0007s08340	POPTR_0007s08340 (9)	scaffold_7:7034440-7036378(+) (10)	NA	Q9SK55	NAC domain-containing protein 42	AT2G43000.1	NAC domain containing protein 42 	LOC_Os03g56580.1	"no apical meristem protein, putative, expressed"	Medtr2g088140.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.207234.1.S1_at	A	A1TS	POPTR_0007s08350	POPTR_0007s08350 (11)	scaffold_7:7098023-7099426(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207235.1.S1_at	A	A1TS	POPTR_0007s08360	POPTR_0007s08360 (10)	scaffold_7:7110309-7111342(+) (10)	NA	Q9LTS3	Cytokinin dehydrogenase 3	AT5G56970.1	cytokinin oxidase 3 	LOC_Os01g09260.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr2g045960.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
PtpAffx.207236.1.S1_at	A	A1TS	POPTR_0007s08370	POPTR_0007s08370 (11)	scaffold_7:7137124-7137425(-) (11)	NA	Q6NQ83	"Pentatricopeptide repeat-containing protein At3g22470, mitochondrial"	AT3G22470.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g35790.1	"Rf1, mitochondrial precursor, putative"	Medtr4g155160.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207237.1.S1_at	A	A1TS	POPTR_0007s08390	POPTR_0007s08390 (11)	scaffold_7:7159914-7159993(+) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os02g32030.1	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.207237.1.S1_s_at	A	A1TS	POPTR_0007s08390	POPTR_0007s08390 (11)	scaffold_7:7159781-7160072(+) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os02g32030.1	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.207238.1.S1_s_at	A	A1TS	POPTR_0007s08400	POPTR_0007s08400 (11)	scaffold_7:7197427-7197513(-) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os02g32030.1	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.207239.1.S1_at	A	A1TS	POPTR_0007s08440	POPTR_0007s08440 (11)	scaffold_7:7250461-7251215(-) (11)	NA	Q6AYG0	UPF0431 protein C1orf66 homolog	AT1G16650.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os12g41670.1	expressed protein	Medtr2g076710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207240.1.S1_at	A	A1TS	POPTR_0007s08450	POPTR_0007s08450 (11)	scaffold_7:7279843-7280417(-) (11)	NA	NA	NA	AT1G79060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 3399 Blast hits to 980 proteins in 195 species: Archae - 0; Bacteria - 839; Metazoa - 390; Fungi - 256; Plants - 154; Viruses - 9; Other Eukaryotes - 1751 (source: NCBI BLink). 	LOC_Os06g46250.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207241.1.S1_at	A	A1TS	POPTR_0007s08460	POPTR_0007s08460 (11)	scaffold_7:7302309-7304570(-) (11)	NA	NA	NA	AT2G34750.1	RNA polymerase I specific transcription initiation factor RRN3 protein 	LOC_Os06g47350.2	"RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207242.1.S1_at	A	A1TS	POPTR_0007s08470	POPTR_0007s08470 (11)	scaffold_7:7322473-7322848(+) (11)	NA	Q9Y4C4	Malignant fibrous histiocytoma-amplified sequence 1	AT4G35470.1	plant intracellular ras group-related LRR 4 	LOC_Os08g40090.1	"leucine rich repeat containing protein, expressed"	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.207242.1.S1_s_at	A	A2TS	POPTR_0005s10140	POPTR_0005s10140 (11)//POPTR_0007s08470 (11)	scaffold_5:7249125-7249437(+) (11)//scaffold_7:7322506-7322818(+) (11)	NA	Q9V780	Protein lap1	AT4G35470.1	plant intracellular ras group-related LRR 4 	LOC_Os08g40090.1	"leucine rich repeat containing protein, expressed"	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.207243.1.S1_at	A	A1TS	POPTR_0007s08480	POPTR_0007s08480 (11)	scaffold_7:7336089-7336339(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207244.1.S1_at	A	A1TS	POPTR_0007s08530	POPTR_0007s08530 (11)	scaffold_7:7360201-7360859(-) (11)	NA	Q54Z40	Myb-like protein H	AT5G08520.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207245.1.S1_s_at	A	A1TS	POPTR_0007s08570	POPTR_0007s08570 (11)	scaffold_7:7413597-7415888(-) (11)	NA	O49873	MLO protein homolog 1	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr3g160040.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.207246.1.S1_at	A	A1TS	POPTR_0007s08570	POPTR_0007s08570 (11)	scaffold_7:7413321-7413505(-) (11)	NA	O49873	MLO protein homolog 1	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr3g160040.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.207247.1.S1_at	A	A1TS	POPTR_0007s08590	POPTR_0007s08590 (11)	scaffold_7:7440446-7440677(-) (11)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.207248.1.S1_at	A	A1TS	POPTR_0007s08600	POPTR_0007s08600 (11)	scaffold_7:7461220-7462029(+) (11)	NA	Q7Z569	BRCA1-associated protein	AT2G26000.2	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g09060.1	"BRCA1-associated protein, putative, expressed"	Medtr2g127260.1	"Zinc finger, UBP-type; Zinc finger, RING-type; BRCA1-associated 2 "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.207249.1.S1_at	A	A1TS	POPTR_0007s08610	POPTR_0007s08610 (11)	scaffold_7:7474925-7475812(-) (11)	NA	Q9LX20	Aspartic proteinase-like protein 1	AT4G35880.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g15790.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g089200.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207250.1.S1_at	A	A1TS	POPTR_0007s08630	POPTR_0007s08630 (11)	scaffold_7:7500266-7500659(-) (11)	NA	Q8CBX0	Transmembrane protein 63C	AT4G35870.1	early-responsive to dehydration stress protein (ERD4) 	LOC_Os03g04450.1	expressed protein	Medtr8g089170.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.207251.1.S1_at	A	A1TS	POPTR_0007s10450	POPTR_0007s10450 (11)	scaffold_7:10402066-10402300(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207252.1.S1_at	A	A1TS	POPTR_0007s10460	POPTR_0007s10460 (11)	scaffold_7:10413151-10417401(+) (11)	NA	Q6C9M9	Chromatin modification-related protein EAF3	AT4G37280.1	MRG family protein 	LOC_Os04g01130.1	"chromatin modification-related protein EAF3, putative, expressed"	NA	NA	NA	NA	GO:0005634|nucleus
PtpAffx.207253.1.S1_at	A	A1MS	POPTR_0007s10470	POPTR_0007s10470 (11)	scaffold_7:10418387-10418991(-) (11)	NA	Q08350	Probable cinnamyl alcohol dehydrogenase 7/8	AT3G19450.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os02g09490.1	"dehydrogenase, putative, expressed"	Medtr5g032770.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.207255.1.S1_s_at	A	A1TS	POPTR_0007s10600	POPTR_0007s10600 (11)	scaffold_7:10634690-10636395(+) (11)	NA	A3KPE8	Small RNA degrading nuclease 1	AT5G67240.2	small RNA degrading nuclease 3 	LOC_Os04g55700.1	"exonuclease, putative, expressed"	Medtr1g027960.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207256.1.S1_at	A	A1TS	POPTR_0007s10640	POPTR_0007s10640 (11)	scaffold_7:10668269-10668838(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207257.1.S1_at	A	A1TS	POPTR_0007s10680	POPTR_0007s10680 (11)	scaffold_7:10736760-10737233(+) (11)	NA	Q8C2P3	tRNA-dihydrouridine synthase 1-like	AT5G67220.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os06g49870.1	"tRNA-dihydrouridine synthase, putative, expressed"	Medtr8g078600.1	"Dihydrouridine synthase, DuS "	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity	NA
PtpAffx.207258.1.S1_at	A	A1TS	POPTR_0007s10700	POPTR_0007s10700 (11)	scaffold_7:10742363-10742568(-) (11)	NA	Q54RA4	Probable iron/ascorbate oxidoreductase DDB_G0283291	AT3G50210.3	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os09g07020.1	"oxidoreductase, putative, expressed"	Medtr4g128850.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.207258.1.S1_s_at	A	A1TS	POPTR_0007s10700	POPTR_0007s10700 (11)	scaffold_7:10742351-10743990(-) (11)	NA	Q54RA4	Probable iron/ascorbate oxidoreductase DDB_G0283291	AT3G50210.3	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os09g07020.1	"oxidoreductase, putative, expressed"	Medtr4g128850.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.207259.1.S1_at	A	A1TS	POPTR_0007s10810	POPTR_0007s10810 (11)	scaffold_7:10981469-10982096(+) (11)	NA	Q9SLN1	Filament-like plant protein 7	AT2G23360.1	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	NA	NA	GO:0016020|membrane
PtpAffx.207260.1.S1_at	A	A1TS	POPTR_0007s10830	POPTR_0007s10830 (11)	scaffold_7:11006338-11006938(+) (11)	NA	P93831	Histone-lysine N-methyltransferase CLF	AT2G23380.1	SET domain-containing protein 	LOC_Os06g16390.1	"SET domain containing protein, expressed"	Medtr5g016780.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207262.1.S1_at	A	A1MS	POPTR_0007s10860	POPTR_0007s10860 (9)	scaffold_7:11030986-11031837(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT4G34040.1	RING/U-box superfamily protein 	LOC_Os04g55510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130170.2	"Site-specific DNA-methyltransferase (cytosine-N4-specific); Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207264.1.S1_at	A	A1TS	POPTR_0007s10880	POPTR_0007s10880 (11)	scaffold_7:11066290-11066879(-) (11)	NA	O48653	DNA polymerase alpha catalytic subunit	AT5G67100.1	DNA-directed DNA polymerases 	LOC_Os01g64820.1	"POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed"	Medtr5g017000.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0001882|nucleoside binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	GO:0005634|nucleus
PtpAffx.207265.1.S1_at	A	A1TS	POPTR_0007s10910	POPTR_0007s10910 (11)	scaffold_7:11116245-11117021(+) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os04g59330.1	expressed protein	Medtr6g086340.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.207267.1.S1_at	A	A1TS	POPTR_0007s10950	POPTR_0007s10950 (11)	scaffold_7:11161281-11161560(+) (11)	NA	Q9FHA7	Transcription factor HEC1	AT5G67060.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g36740.1	"bHelix-loop-helix transcription factor, putative"	Medtr5g017180.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.207269.1.S1_at	A	A1TS	POPTR_0007s11010	POPTR_0007s11010 (11)	scaffold_7:11263249-11264442(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207270.1.S1_at	A	A1TS	POPTR_0007s11080	POPTR_0007s11080 (11)	scaffold_7:11340665-11340783(+) (11)	NA	Q9SZ06	Ethylene-responsive transcription factor ERF109	AT4G34410.1	redox responsive transcription factor 1 	LOC_Os09g28440.1	"AP2 domain containing protein, expressed"	Medtr4g129730.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.207271.1.S1_at	A	A1TS	POPTR_0007s11090	POPTR_0007s11090 (9)	scaffold_7:11357585-11358291(-) (9)	NA	NA	NA	AT3G50370.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). 	NA	NA	CU571152_13.1	hypothetical protein CU571152.5 45352-54530 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207272.1.S1_at	A	A1TS	POPTR_0007s11110	POPTR_0007s11110 (11)	scaffold_7:11390670-11391177(+) (11)	NA	A1L1P9	Multidrug and toxin extrusion protein 1	AT1G58340.1	MATE efflux family protein 	LOC_Os02g45380.1	"MATE domain containing protein, expressed"	Medtr5g076410.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.207273.1.S1_at	A	A1TS	POPTR_0007s11130	POPTR_0007s11130 (11)	scaffold_7:11404674-11404844(+) (11)	NA	Q9ZQE6	Calmodulin-like protein 1	AT2G15680.1	Calcium-binding EF-hand family protein 	LOC_Os01g72100.1	"OsCML10 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g017520.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207273.1.S1_s_at	A	A1TS	POPTR_0007s11130	POPTR_0007s11130 (11)	scaffold_7:11404400-11404738(+) (11)	NA	Q9ZQE6	Calmodulin-like protein 1	AT2G15680.1	Calcium-binding EF-hand family protein 	LOC_Os01g72100.1	"OsCML10 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g017520.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207274.1.S1_s_at	A	A1TS	POPTR_0007s11140	POPTR_0007s11140 (11)	scaffold_7:11414828-11415448(-) (11)	NA	Q9LQU4	Uncharacterized protein At1g14870	AT1G14870.1	PLANT CADMIUM RESISTANCE 2 	LOC_Os02g52550.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g129520.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207275.1.S1_at	A	A1TS	POPTR_0007s11180	POPTR_0007s11180 (11)	scaffold_7:11448325-11449417(+) (11)	NA	Q8GUM4	Uncharacterized membrane protein At3g27390	AT4G37030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12680.1); Has 101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g37670.1	"steroid nuclear receptor, ligand-binding, putative, expressed"	CU571152_7.1	"Steroid nuclear receptor, ligand-binding, related CU571152.5 28382-24052 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207276.1.S1_at	A	A1TS	POPTR_0007s11210	POPTR_0007s11210 (11)	scaffold_7:11506712-11507353(+) (11)	NA	NA	NA	AT3G50620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr5g017700.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207277.1.S1_at	A	A1TS	POPTR_0007s11220	POPTR_0007s11220 (11)	scaffold_7:11522768-11523111(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207278.1.S1_s_at	A	A1TS	POPTR_0007s11230	POPTR_0007s11230 (11)	scaffold_7:11524845-11525115(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207279.1.S1_at	A	A1TS	POPTR_0007s11240	POPTR_0007s11240 (11)	scaffold_7:11544362-11545283(+) (11)	NA	NA	NA	AT3G50610.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g27680.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207280.1.S1_at	A	A1TS	POPTR_0007s11280	POPTR_0007s11280 (11)	scaffold_7:11627375-11628534(+) (11)	NA	NA	NA	AT4G37080.3	"Protein of unknown function, DUF547 "	LOC_Os09g28850.1	expressed protein	Medtr8g097130.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207283.1.S1_at	A	A1TS	POPTR_0007s11400	POPTR_0007s11400 (11)	scaffold_7:11769047-11770786(-) (11)	NA	Q9NYH9	U3 small nucleolar RNA-associated protein 6 homolog	AT4G28200.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). "	LOC_Os02g01350.1	expressed protein	Medtr8g147010.1	Ribosomal protein L29 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207284.1.S1_at	A	A1TS	POPTR_0007s11420	POPTR_0007s11420 (11)	scaffold_7:11784009-11785783(-) (11)	NA	Q39008	Mitogen-activated protein kinase kinase kinase 1	AT5G66850.1	mitogen-activated protein kinase kinase kinase 5 	LOC_Os03g55560.2	"STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207285.1.S1_at	A	A1TS	POPTR_0007s11450	POPTR_0007s11450 (10)	scaffold_7:11801343-11801758(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207286.1.S1_at	A	A1TS	POPTR_0007s11480	POPTR_0007s11480 (11)	scaffold_7:11853589-11854157(-) (11)	NA	Q9FKZ1	Probable disease resistance protein At5g66900	AT5G66900.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os12g39620.3	"disease resistance protein, putative, expressed"	Medtr5g018040.1	NB-ARC; Arabidopsis broad-spectrum mildew resistance 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.207287.1.S1_at	A	A1TS	POPTR_0007s11490	POPTR_0007s11490 (11)	scaffold_7:11861494-11862085(-) (11)	NA	Q9FKZ1	Probable disease resistance protein At5g66900	AT5G66900.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr5g018050.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.207289.1.S1_at	A	A3TS	POPTR_0007s11510	POPTR_0007s11510 (11)//POPTR_0007s11500 (9)//POPTR_0007s11530 (9)	scaffold_7:11865371-11865547(-) (9)//scaffold_7:11876983-11877960(-) (11)//scaffold_7:11892631-11892807(-) (9)	NA	Q9FKZ1	Probable disease resistance protein At5g66900	AT5G66900.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr5g018040.1	NB-ARC; Arabidopsis broad-spectrum mildew resistance 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.207291.1.S1_s_at	A	A1TS	POPTR_0007s11540	POPTR_0007s11540 (11)	scaffold_7:11912144-11912472(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207293.1.S1_at	A	A1TS	POPTR_0007s11550	POPTR_0007s11550 (11)	scaffold_7:11949587-11950160(+) (11)	NA	Q9FKZ1	Probable disease resistance protein At5g66900	AT5G66900.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os12g39620.3	"disease resistance protein, putative, expressed"	Medtr5g018040.1	NB-ARC; Arabidopsis broad-spectrum mildew resistance 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.207294.1.S1_at	A	A1TS	POPTR_0007s11560	POPTR_0007s11560 (9)	scaffold_7:11950815-11951283(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207296.1.S1_at	A	A1TS	POPTR_0007s11610	POPTR_0007s11610 (11)	scaffold_7:11985373-11986235(+) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT4G37160.1	SKU5  similar 15 	LOC_Os07g02810.1	"L-ascorbate oxidase homolog precursor, putative, expressed"	Medtr5g018260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.207297.1.S1_at	A	A1TS	POPTR_0007s11660	POPTR_0007s11660 (11)	scaffold_7:12043814-12044116(+) (11)	NA	Q6NLE0	F-box protein At5g41720	AT1G64295.1	F-box associated ubiquitination effector family protein 	LOC_Os08g43530.1	OsFBX306 - F-box domain containing protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207301.1.S1_s_at	A	A6TS	POPTR_0007s11670	POPTR_0007s11670 (11)//POPTR_0007s11720 (11)//POPTR_0007s11710 (11)//POPTR_0007s11690 (11)//POPTR_0007s11700 (11)//POPTR_0007s11730 (11)	scaffold_7:12051708-12051796(-) (11)//scaffold_7:12079466-12079554(-) (11)//scaffold_7:12091091-12091179(+) (11)//scaffold_7:12096567-12096655(+) (11)//scaffold_7:12109774-12109862(+) (11)//scaffold_7:12116149-12116237(+) (11)	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23560.1	methyl esterase 7 	LOC_Os01g57770.1	"OsPOP4 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g018420.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207304.1.S1_at	A	A1MS	POPTR_0007s11780	POPTR_0007s11780 (11)	scaffold_7:12164608-12165593(+) (11)	NA	P52578	Isoflavone reductase homolog	AT4G39230.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.207305.1.S1_at	A	A1TS	POPTR_0007s11810	POPTR_0007s11810 (11)	scaffold_7:12189057-12189457(-) (11)	NA	O80470	GDSL esterase/lipase At2g23540	AT2G23540.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g47210.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g137420.1	hypothetical protein 	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.207306.1.S1_at	A	A1TS	POPTR_0007s11820	POPTR_0007s11820 (11)	scaffold_7:12197834-12198120(+) (11)	NA	Q96GN5	Cell division cycle-associated 7-like protein	AT2G23530.1	Zinc-finger domain of monoamine-oxidase A repressor R1 	LOC_Os11g36030.1	"protein binding protein, putative, expressed"	Medtr4g128660.1	protein binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207307.1.S1_at	A	A1TS	POPTR_0007s11820	POPTR_0007s11820 (11)	scaffold_7:12198483-12198988(+) (11)	NA	Q96GN5	Cell division cycle-associated 7-like protein	AT2G23530.1	Zinc-finger domain of monoamine-oxidase A repressor R1 	LOC_Os11g36030.1	"protein binding protein, putative, expressed"	Medtr4g128660.1	protein binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207308.1.S1_at	A	A1TS	POPTR_0007s11830	POPTR_0007s11830 (11)	scaffold_7:12213847-12214388(+) (11)	NA	Q8LGM7	Molybdenum cofactor sulfurase	AT2G23520.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g55704.1	expressed protein	Medtr1g129690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207309.1.S1_at	A	A1TS	POPTR_0007s11870	POPTR_0007s11870 (11)	scaffold_7:12235360-12236477(+) (11)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	LOC_Os12g40080.1	B3 DNA binding domain containing protein	Medtr3g151050.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.207311.1.S1_at	A	A1TS	POPTR_0007s11900	POPTR_0007s11900 (11)	scaffold_7:12252586-12254224(+) (11)	NA	Q8GUM4	Uncharacterized membrane protein At3g27390	AT5G40640.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27390.1); Has 104 Blast hits to 102 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os04g40700.3	"steroid nuclear receptor, ligand-binding, putative, expressed"	Medtr3g106920.1	"Steroid nuclear receptor, ligand-binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207312.1.S1_at	A	A1TS	POPTR_0007s11910	POPTR_0007s11910 (11)	scaffold_7:12263492-12265438(+) (11)	NA	Q86K80	UPF0420 protein	AT2G23470.1	"Protein of unknown function, DUF647 "	LOC_Os01g66350.1	"DUF647 domain containing protein, putative, expressed"	Medtr7g064550.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207313.1.S1_at	A	A1TS	POPTR_0007s11930	POPTR_0007s11930 (11)	scaffold_7:12274609-12275047(-) (11)	NA	P90648	Myosin heavy chain kinase B	AT3G50390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52870.1	"WD-40 repeat family protein, putative, expressed"	Medtr5g018560.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207314.1.S1_at	A	A1TS	POPTR_0007s11940	POPTR_0007s11940 (11)	scaffold_7:12286211-12286804(+) (11)	NA	NA	NA	AT3G50380.1	Protein of unknown function (DUF1162) 	LOC_Os12g40279.2	"protein kinase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207316.1.S1_at	A	A1MS	POPTR_0007s11950	POPTR_0007s11950 (10)	scaffold_7:12302687-12303689(+) (10)	NA	NA	NA	AT3G50380.1	Protein of unknown function (DUF1162) 	LOC_Os12g40279.2	"protein kinase domain containing protein, expressed"	NA	NA	GO:0008104|protein localization	NA	NA
PtpAffx.207317.1.S1_at	A	A1TS	POPTR_0007s11960	POPTR_0007s11960 (11)	scaffold_7:12308130-12308661(-) (11)	NA	Q8VZB9	60S ribosomal protein L10a-1	AT1G08360.1	Ribosomal protein L1p/L10e family 	LOC_Os01g64090.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.207318.1.S1_at	A	A1TS	POPTR_0007s11990	POPTR_0007s11990 (11)	scaffold_7:12334818-12335006(+) (11)	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207319.1.S1_s_at	A	A1TS	POPTR_0007s12020	POPTR_0007s12020 (11)	scaffold_7:12357296-12358266(+) (11)	NA	NA	NA	AT4G37210.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g03070.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr5g018620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207320.1.S1_at	A	A1TS	POPTR_0007s12030	POPTR_0007s12030 (9)	scaffold_7:12364290-12371350(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207321.1.S1_at	A	A1TS	POPTR_0007s12050	POPTR_0007s12050 (11)	scaffold_7:12376148-12376925(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT5G66560.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g55830.1	"BTBN10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	AC157372_1.1	BTB/POZ; NPH3 AC157372.2 9592-12375 E EGN_Mt090430 200	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.207322.1.S1_at	A	A1TS	POPTR_0007s12100	POPTR_0007s12100 (11)	scaffold_7:12425222-12425621(+) (11)	NA	NA	NA	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33590.1	"cytochrome P450, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207323.1.S1_s_at	A	A1TS	POPTR_0007s12120	POPTR_0007s12120 (11)	scaffold_7:12432076-12433426(-) (11)	NA	NA	NA	AT5G66600.3	"Protein of unknown function, DUF547 "	LOC_Os03g55890.1	"ternary complex factor MIP1, putative, expressed"	AC233653_9.1	Protein of unknown function DUF547 AC233653.2 46326-50755 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207324.1.S1_at	A	A1TS	POPTR_0007s12130	POPTR_0007s12130 (10)	scaffold_7:12457226-12457648(+) (11)	NA	O64827	Histone-lysine N-methyltransferase SUVR5	AT2G23740.2	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding 	LOC_Os02g47900.1	"SET domain protein SDG117, putative, expressed"	Medtr5g018800.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.207325.1.S1_at	A	A1TS	POPTR_0007s12140	POPTR_0007s12140 (11)	scaffold_7:12462165-12462825(-) (11)	NA	NA	NA	AT2G23755.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	AC233653_4.1	"Oxygen-evolving enhancer protein 1, chloroplast precursor, putative AC233653.2 22173-20038 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207326.1.S1_s_at	A	A1TS	POPTR_0007s12170	POPTR_0007s12170 (11)	scaffold_7:12482427-12482548(-) (11)	NA	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.2	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.207327.1.S1_at	A	A1TS	POPTR_0007s12180	POPTR_0007s12180 (11)	scaffold_7:12516321-12516787(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207328.1.S1_at	A	A1TS	POPTR_0007s12210	POPTR_0007s12210 (11)	scaffold_7:12542513-12543165(+) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT2G33580.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g018990.1	"Peptidoglycan-binding LysM; Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207329.1.S1_at	A	A1TS	POPTR_0007s12220	POPTR_0007s12220 (11)	scaffold_7:12544066-12544421(-) (11)	NA	P93050	Probable LRR receptor-like serine/threonine-protein kinase RKF3	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g09960.1	"LYK8, putative, expressed"	Medtr5g019000.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207330.1.S1_at	A	A1TS	POPTR_0007s12230	POPTR_0007s12230 (11)	scaffold_7:12552184-12552771(-) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g09960.1	"LYK8, putative, expressed"	Medtr5g019000.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207331.1.S1_at	A	A1TS	POPTR_0007s12300	POPTR_0007s12300 (11)	scaffold_7:12618644-12620303(-) (11)	NA	Q3UMR5	Coiled-coil domain-containing protein 109A	AT2G23790.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207332.1.S1_at	A	A1TS	POPTR_0007s12310	POPTR_0007s12310 (11)	scaffold_7:12636179-12636704(-) (11)	NA	Q56XQ0	UPF0496 protein At2g18630	AT2G18630.1	Protein of unknown function (DUF677) 	LOC_Os03g10240.2	"DUF677 domain containing protein, putative, expressed"	Medtr5g019340.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207333.1.S1_at	A	A1TS	POPTR_0007s12380	POPTR_0007s12380 (11)	scaffold_7:12699609-12700019(-) (11)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	NA	NA	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	CU571152_11.1	hypothetical protein CU571152.5 35846-36487 I EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207334.1.S1_s_at	A	A1TS	POPTR_0535s00200	POPTR_0535s00200 (9)	scaffold_535:1936-2223(-) (9)//scaffold_7:12734086-12734373(-) (9)	NA	NA	NA	AT4G36760.1	aminopeptidase P1 	LOC_Os06g45360.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g019520.1	Creatinase; Peptidase M24 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207335.1.S1_at	A	A1TS	POPTR_0535s00210	POPTR_0535s00210 (11)	scaffold_535:3989-4345(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.207337.1.S1_s_at	A	A1TS	POPTR_0007s12450	POPTR_0007s12450 (11)	scaffold_7:12749093-12750855(-) (11)	NA	O23208	Homeobox-leucine zipper protein ATHB-40	AT4G36740.1	homeobox protein 40 	LOC_Os07g39320.1	"homeobox domain containing protein, expressed"	Medtr5g019570.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.207339.1.S1_at	A	A1TS	POPTR_0007s12540	POPTR_0007s12540 (11)	scaffold_7:12832644-12834818(+) (11)	NA	Q9NVU0	DNA-directed RNA polymerase III subunit RPC5	AT5G49530.1	SIN-like family protein 	LOC_Os08g16780.1	"sin-like protein conserved region containing protein, expressed"	Medtr5g026170.1	Sin-like protein conserved region 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.207340.1.S1_at	A	A1TS	POPTR_0007s12580	POPTR_0007s12580 (11)	scaffold_7:12861956-12863148(+) (11)	NA	Q8VZ59	Flavin-containing monooxygenase YUCCA6	AT5G25620.2	Flavin-binding monooxygenase family protein 	LOC_Os01g53200.1	"flavin monooxygenase, putative, expressed"	Medtr1g009490.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207341.1.S1_at	A	A1TS	POPTR_0007s12590	POPTR_0007s12590 (11)	scaffold_7:12868343-12868760(-) (11)	NA	NA	NA	AT5G42960.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207342.1.S1_at	A	A1TS	POPTR_0007s12600	POPTR_0007s12600 (11)	scaffold_7:12876466-12877060(-) (11)	NA	NA	NA	AT2G18500.1	ovate family protein 7 	LOC_Os01g12690.1	"plant-specific domain TIGR01568 family protein, expressed"	Medtr4g158820.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207343.1.S1_at	A	A1TS	POPTR_0007s12620	POPTR_0007s12620 (11)	scaffold_7:12889053-12889734(+) (11)	NA	NA	NA	AT5G66740.1	Protein of unknown function (DUF620) 	LOC_Os01g55795.1	expressed protein	Medtr5g019760.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207344.1.S1_at	A	A1TS	POPTR_0007s12640	POPTR_0007s12640 (11)	scaffold_7:12898823-12900646(+) (11)	NA	P29054	Transcription initiation factor IIB	AT4G36650.1	plant-specific TFIIB-related protein 	LOC_Os03g10070.1	"transcription initiation factor IIB, putative, expressed"	Medtr5g019800.1	Cyclin-like; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.207345.1.S1_at	A	A1MS	POPTR_0007s12690	POPTR_0007s12690 (11)	scaffold_7:12930774-12932148(+) (11)	NA	Q42404	U1 small nuclear ribonucleoprotein 70 kDa	AT3G50670.1	U1 small nuclear ribonucleoprotein-70K 	LOC_Os10g02630.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g093540.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.207345.1.S1_s_at	A	A1TS	POPTR_0007s12690	POPTR_0007s12690 (11)	scaffold_7:12931495-12932101(+) (11)	NA	Q42404	U1 small nuclear ribonucleoprotein 70 kDa	AT3G50670.1	U1 small nuclear ribonucleoprotein-70K 	LOC_Os10g02630.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g093540.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.207347.1.S1_at	A	A1TS	POPTR_0007s12780	POPTR_0007s12780 (11)	scaffold_7:13040511-13041460(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g020000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207347.1.S1_s_at	A	A1TS	POPTR_0007s12780	POPTR_0007s12780 (11)	scaffold_7:13041211-13041479(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g020000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207348.1.S1_at	A	A1TS	POPTR_0007s12790	POPTR_0007s12790 (11)	scaffold_7:13046867-13047814(+) (11)	NA	Q55CU8	Random slug protein 5	AT1G75170.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g51430.2	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr8g093390.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207349.1.S1_at	A	A1TS	POPTR_0007s12810	POPTR_0007s12810 (11)	scaffold_7:13064310-13065395(+) (11)	NA	Q8R5L3	Vam6/Vps39-like protein	AT4G36630.1	Vacuolar sorting protein 39 	LOC_Os03g50740.2	"retrotransposon protein, putative, SINE subclass, expressed"	Medtr5g020050.1	"EMB2754 ; binding, putative "	NA	GO:0005083|small GTPase regulator activity	NA
PtpAffx.207350.1.S1_s_at	A	A1TS	POPTR_0007s12810	POPTR_0007s12810 (11)	scaffold_7:13068343-13068530(+) (11)	NA	Q8R5L3	Vam6/Vps39-like protein	AT4G36630.1	Vacuolar sorting protein 39 	LOC_Os03g50740.2	"retrotransposon protein, putative, SINE subclass, expressed"	Medtr5g020050.1	"EMB2754 ; binding, putative "	NA	GO:0005083|small GTPase regulator activity	NA
PtpAffx.207351.1.S1_at	A	A1MS	POPTR_0007s12830	POPTR_0007s12830 (11)	scaffold_7:13072067-13072261(+) (11)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr2g055510.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207352.1.S1_at	A	A1TS	POPTR_0007s12840	POPTR_0007s12840 (11)	scaffold_7:13078521-13078723(+) (11)	NA	Q8VZ37	AP-3 complex subunit sigma	AT3G50860.1	Clathrin adaptor complex small chain family protein 	LOC_Os03g12710.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr8g093300.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.207353.1.S1_s_at	A	A1TS	POPTR_0007s12850	POPTR_0007s12850 (11)	scaffold_7:13079245-13080395(-) (11)	NA	Q68FT3	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2	AT5G49555.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os12g43590.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr8g093280.1	Phytoene dehydrogenase-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207354.1.S1_at	A	A1TS	POPTR_0007s12860	POPTR_0007s12860 (11)	scaffold_7:13091970-13092232(+) (11)	NA	NA	NA	AT4G39250.1	RAD-like 1 	LOC_Os01g44390.2	"MYB family transcription factor, putative, expressed"	Medtr5g020070.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207355.1.S1_s_at	A	A1TS	POPTR_0007s12870	POPTR_0007s12870 (11)	scaffold_7:13094678-13094874(+) (11)	NA	NA	NA	AT1G75250.1	RAD-like 6 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr5g020070.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207356.1.S1_at	A	A1TS	POPTR_0007s12880	POPTR_0007s12880 (11)	scaffold_7:13097569-13099579(+) (11)	NA	Q54TC5	Maf-like protein DDB_G0281937	AT5G66550.1	Maf-like protein 	LOC_Os03g12810.1	"maf, putative, expressed"	Medtr8g093260.1	Maf-like protein 	NA	NA	GO:0005737|cytoplasm
PtpAffx.207358.1.S1_at	A	A1TS	POPTR_0007s12910	POPTR_0007s12910 (11)	scaffold_7:13111763-13112369(+) (11)	NA	NA	NA	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr5g100950.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207359.1.S1_at	A	A1TS	POPTR_0007s12920	POPTR_0007s12920 (10)	scaffold_7:13113259-13114132(-) (10)	NA	Q6NRY2	Nucleolar protein 6	AT1G63810.1	CONTAINS InterPro DOMAIN/s: Nrap protein (InterPro:IPR005554); Has 396 Blast hits to 382 proteins in 182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). 	LOC_Os12g06910.1	"nucleolar protein family 6, putative, expressed"	Medtr5g020080.1	Nrap protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207360.1.S1_at	A	A2TS	POPTR_0007s12930	POPTR_0007s12930 (11)//POPTR_0005s12440 (10)	scaffold_5:9195684-9196374(-) (10)//scaffold_7:13134963-13135683(+) (11)	NA	Q8LC79	GATA transcription factor 18	AT3G50870.1	GATA type zinc finger transcription factor family protein 	LOC_Os01g47360.1	GATA zinc finger domain containing protein	Medtr5g020130.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.207361.1.S1_at	A	A1TS	POPTR_0007s12950	POPTR_0007s12950 (11)	scaffold_7:13142420-13144017(-) (11)	NA	Q9FRL3	Sugar transporter ERD6-like 6	AT1G75220.1	Major facilitator superfamily protein 	LOC_Os05g50280.1	"transporter family protein, putative, expressed"	Medtr8g093160.2	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.207362.1.S1_s_at	A	A1TS	POPTR_0007s12960	POPTR_0007s12960 (11)	scaffold_7:13148740-13148968(+) (11)	NA	O94468	Probable DNA-3-methyladenine glycosylase 2	AT3G50880.1	DNA glycosylase superfamily protein 	LOC_Os05g50290.1	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	Medtr5g020230.1	HhH-GPD 	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
PtpAffx.207363.1.S1_at	A	A1TS	POPTR_0007s12980	POPTR_0007s12980 (10)	scaffold_7:13176694-13176891(-) (11)	NA	NA	NA	AT4G36600.1	Late embryogenesis abundant (LEA) protein 	NA	NA	Medtr5g020400.1	"late embryogenesis abundant domain-containing protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207364.1.S1_at	A	A1TS	POPTR_0007s13020	POPTR_0007s13020 (11)	scaffold_7:13212892-13212926(+) (11)	NA	Q9ZPW3	Transcription factor bHLH64	AT2G18300.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g32510.2	"BHLH transcription factor, putative, expressed"	Medtr3g162340.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.207364.1.S1_x_at	A	A1TS	POPTR_0007s13020	POPTR_0007s13020 (11)	scaffold_7:13212817-13213323(+) (11)	NA	Q9ZPW3	Transcription factor bHLH64	AT2G18300.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g32510.2	"BHLH transcription factor, putative, expressed"	Medtr3g162340.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.207365.1.S1_at	A	A1TS	POPTR_0007s13030	POPTR_0007s13030 (11)	scaffold_7:13216179-13218326(+) (11)	NA	Q9ZPW2	Anaphase-promoting complex subunit 10	AT2G18290.1	anaphase promoting complex 10 	LOC_Os05g50360.1	"anaphase-promoting complex subunit 10, putative, expressed"	NA	NA	GO:0030071|regulation of mitotic metaphase/anaphase transition	GO:0005515|protein binding	GO:0005680|anaphase-promoting complex
PtpAffx.207365.1.S1_s_at	A	A2TS	POPTR_0005s12350	POPTR_0005s12350 (11)//POPTR_0007s13030 (11)	scaffold_5:9116495-9118435(-) (11)//scaffold_7:13216156-13218295(+) (11)	NA	Q9ZPW2	Anaphase-promoting complex subunit 10	AT2G18290.1	anaphase promoting complex 10 	LOC_Os05g50360.1	"anaphase-promoting complex subunit 10, putative, expressed"	NA	NA	GO:0030071|regulation of mitotic metaphase/anaphase transition	GO:0005515|protein binding	GO:0005680|anaphase-promoting complex
PtpAffx.207366.1.S1_at	A	A1TS	POPTR_0007s13070	POPTR_0007s13070 (11)	scaffold_7:13245898-13246425(-) (11)	NA	Q9ZPV9	Syntaxin-112	AT2G18260.1	syntaxin of plants 112 	LOC_Os03g52650.1	"syntaxin-related protein, putative, expressed"	Medtr5g020560.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
PtpAffx.207367.1.S1_at	A	A1TS	POPTR_0007s13090	POPTR_0007s13090 (11)	scaffold_7:13261917-13263330(+) (11)	NA	P40938	Replication factor C subunit 3	AT5G27740.1	ATPase family associated with various cellular activities (AAA)  	LOC_Os02g47605.1	expressed protein	Medtr5g020710.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.207369.1.S1_at	A	A1TS	POPTR_0007s13120	POPTR_0007s13120 (11)	scaffold_7:13287244-13287575(+) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT4G36520.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g44310.2	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207370.1.S1_x_at	A	A1TS	POPTR_0007s13120	POPTR_0007s13120 (11)	scaffold_7:13288469-13288586(+) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT4G36520.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g44310.2	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207371.1.S1_at	A	A1TS	POPTR_0007s13130	POPTR_0007s13130 (11)	scaffold_7:13293198-13293552(+) (11)	NA	Q9FJY9	"Pentatricopeptide repeat-containing protein At5g66500, mitochondrial"	AT5G66500.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g42650.2	"vegetative storage protein, putative, expressed"	Medtr2g033760.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207372.1.S1_a_at	A	A1TS	POPTR_0007s13140	POPTR_0007s13140 (11)	scaffold_7:13295611-13295652(+) (11)//scaffold_7:13295672-13295713(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207372.1.S1_at	A	A1TS	POPTR_0007s13140	POPTR_0007s13140 (11)	scaffold_7:13295312-13295672(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207373.1.S1_at	A	A1TS	POPTR_0007s13170	POPTR_0007s13170 (11)	scaffold_7:13304307-13304598(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207374.1.S1_at	A	A1TS	POPTR_0007s13200	POPTR_0007s13200 (11)	scaffold_7:13322993-13324302(-) (11)	NA	C6E2H7	GTP-binding protein era homolog	AT5G66470.1	RNA binding;GTP binding 	LOC_Os05g49220.2	"GTP-binding protein, putative, expressed"	Medtr5g020330.1	"GTP-binding protein, HSR1-related "	NA	GO:0003723|RNA binding||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.207376.1.S1_at	A	A1TS	POPTR_0007s13230	POPTR_0007s13230 (11)	scaffold_7:13338536-13340742(-) (11)	NA	NA	NA	AT5G66450.1	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os02g47570.1	"phosphatase, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.207377.1.S1_at	A	A1TS	POPTR_0007s13240	POPTR_0007s13240 (9)	scaffold_7:13351158-13351797(+) (9)	NA	NA	NA	AT5G66440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g162630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207379.1.S1_s_at	A	A1TS	POPTR_0007s13270	POPTR_0007s13270 (11)	scaffold_7:13395495-13396753(+) (11)	NA	NA	NA	AT3G05220.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g56570.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g020880.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.207381.1.S1_at	A	A1TS	POPTR_0007s13290	POPTR_0007s13290 (11)	scaffold_7:13410555-13412411(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT3G50930.1	cytochrome BC1 synthesis 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.207383.1.S1_at	A	A1TS	POPTR_0007s13350	POPTR_0007s13350 (11)	scaffold_7:13469075-13469239(+) (11)	POPTR_0005s12160 (6)	Q10137	Sec14 cytosolic factor	AT4G36490.1	SEC14-like 12 	LOC_Os02g24430.2	expressed protein	Medtr4g096250.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207384.1.S1_at	A	A1TS	POPTR_0007s13360	POPTR_0007s13360 (10)	scaffold_7:13470509-13471698(-) (11)	NA	Q9SFZ3	Transcription factor bHLH110	AT1G27660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01600.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207385.1.S1_at	A	A1TS	POPTR_0337s00230	POPTR_0337s00230 (11)	scaffold_337:13485-14017(+) (11)	NA	NA	NA	AT3G50940.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g42030.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207385.1.S1_s_at	A	A1TS	POPTR_0337s00230	POPTR_0337s00230 (11)	scaffold_337:14052-14371(+) (11)//scaffold_7:13503098-13503417(-) (11)	NA	NA	NA	AT3G50940.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g42030.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207386.1.S1_at	A	A1TS	POPTR_0007s13430	POPTR_0007s13430 (11)	scaffold_7:13524611-13525949(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207387.1.S1_at	A	A1TS	POPTR_0007s13450	POPTR_0007s13450 (9)	scaffold_7:13535883-13536412(+) (9)	NA	Q8BMG8	Mitochondrial folate transporter/carrier	AT5G66380.1	folate transporter 1 	LOC_Os03g52430.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g092650.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207387.1.S1_s_at	A	A1TS	POPTR_0007s13450	POPTR_0007s13450 (11)	scaffold_7:13533445-13535885(+) (11)	NA	Q8BMG8	Mitochondrial folate transporter/carrier	AT5G66380.1	folate transporter 1 	LOC_Os03g52430.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g092650.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207388.1.S1_at	A	A1TS	POPTR_0007s13510	POPTR_0007s13510 (11)	scaffold_7:13563962-13565333(+) (11)	NA	Q8H0V1	CDK5RAP1-like protein	AT4G36390.1	Methylthiotransferase 	LOC_Os11g38030.1	"CDK5RAP1, putative, expressed"	Medtr5g021160.1	Elongator protein 3/MiaB/NifB 	GO:0044260|cellular macromolecule metabolic process||GO:0009451|RNA modification	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0003824|catalytic activity"	NA
PtpAffx.207389.1.S1_at	A	A1TS	POPTR_0007s13520	POPTR_0007s13520 (11)	scaffold_7:13573974-13576738(+) (11)	NA	Q9M066	3-epi-6-deoxocathasterone 23-monooxygenase	AT4G36380.1	Cytochrome P450 superfamily protein 	LOC_Os01g10040.1	"cytochrome P450, putative, expressed"	Medtr5g021130.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.207390.1.S1_s_at	A	A1MS	POPTR_0007s13570	POPTR_0007s13570 (11)	scaffold_7:13609283-13610261(+) (11)	NA	Q9SDZ9	Purple acid phosphatase 2	AT2G16430.2	purple acid phosphatase 10 	LOC_Os01g56880.1	"purple acid phosphatase precursor, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207391.1.S1_at	A	A1TS	POPTR_0007s13580	POPTR_0007s13580 (11)	scaffold_7:13616177-13616966(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G75500.2	Walls Are Thin 1 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g028570.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.207392.1.S1_at	A	A1TS	POPTR_0007s13590	POPTR_0007s13590 (11)	scaffold_7:13621922-13622288(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g114110.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207393.1.S1_at	A	A1TS	POPTR_0007s13600	POPTR_0007s13600 (11)	scaffold_7:13631227-13631265(+) (11)	NA	NA	NA	AT3G51050.1	FG-GAP repeat-containing protein 	LOC_Os02g01070.1	"FG-GAP repeat-containing protein, putative, expressed"	Medtr5g021050.1	FG-GAP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207393.1.S1_x_at	A	A1TS	POPTR_0007s13600	POPTR_0007s13600 (11)	scaffold_7:13630735-13631316(+) (11)	NA	NA	NA	AT3G51050.1	FG-GAP repeat-containing protein 	LOC_Os02g01070.1	"FG-GAP repeat-containing protein, putative, expressed"	Medtr5g021050.1	FG-GAP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207394.1.S1_at	A	A1MS	POPTR_0007s13610	POPTR_0007s13610 (11)	scaffold_7:13654101-13654561(+) (11)	NA	NA	NA	AT3G51060.1	Lateral root primordium (LRP) protein-related 	LOC_Os09g36160.1	"LRP1, putative, expressed"	Medtr5g021040.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207394.1.S1_x_at	A	A1MS	POPTR_0007s13610	POPTR_0007s13610 (11)	scaffold_7:13654101-13654582(+) (11)	NA	NA	NA	AT3G51060.1	Lateral root primordium (LRP) protein-related 	LOC_Os09g36160.1	"LRP1, putative, expressed"	Medtr5g021040.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207395.1.S1_at	A	A1TS	POPTR_0007s13620	POPTR_0007s13620 (11)	scaffold_7:13667411-13668201(+) (11)	NA	Q9SD39	Probable methyltransferase PMT27	AT3G51070.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g49860.1	"methyltransferase, putative, expressed"	Medtr5g021010.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.207396.1.S1_at	A	A1TS	POPTR_0007s13670	POPTR_0007s13670 (11)	scaffold_7:13693941-13695947(+) (11)	NA	Q99L90	Microspherule protein 1	AT3G54350.3	Forkhead-associated (FHA) domain-containing protein  	LOC_Os03g58640.1	"FHA domain containing protein, putative, expressed"	Medtr8g090550.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207397.1.S1_at	A	A1TS	POPTR_0007s13690	POPTR_0007s13690 (11)	scaffold_7:13706855-13707144(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr8g090480.1	"LRR receptor-like serine/threonine-protein kinase FLS2 precursor, related "	NA	GO:0005515|protein binding	NA
PtpAffx.207397.1.S1_x_at	A	A1TS	POPTR_0007s13690	POPTR_0007s13690 (11)	scaffold_7:13706736-13707144(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr8g090480.1	"LRR receptor-like serine/threonine-protein kinase FLS2 precursor, related "	NA	GO:0005515|protein binding	NA
PtpAffx.207399.1.S1_at	A	A1TS	POPTR_0007s13750	POPTR_0007s13750 (11)	scaffold_7:13797755-13798526(-) (11)	NA	Q20035	Uncharacterized membrane protein F35D11.3	AT4G36210.3	Protein of unknown function (DUF726) 	LOC_Os03g02170.2	"transmembrane and coiled-coil domain-containing protein 4, putative, expressed"	Medtr5g021350.1	Protein of unknown function DUF726 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2074.1.A1_at	A	A1TS	POPTR_0008s07400	POPTR_0008s07400 (11)	scaffold_8:4539827-4540231(+) (11)	NA	O80915	PRA1 family protein B4	AT2G38360.1	prenylated RAB acceptor 1.B4 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207400.1.S1_at	A	A1TS	POPTR_0007s13790	POPTR_0007s13790 (11)	scaffold_7:13831132-13832086(+) (11)	NA	NA	NA	AT3G51140.1	Protein of unknown function (DUF3353) 	LOC_Os03g15033.1	expressed protein	Medtr8g090330.1	Flavodoxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207401.1.S1_s_at	A	A1TS	POPTR_0007s13800	POPTR_0007s13800 (11)	scaffold_7:13835689-13836500(+) (11)	NA	Q9SJU4	"Probable fructose-bisphosphate aldolase 1, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.207402.1.S1_at	A	A1TS	POPTR_0007s13850	POPTR_0007s13850 (11)	scaffold_7:13859073-13859969(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207403.1.S1_at	A	A1TS	POPTR_0007s13860	POPTR_0007s13860 (10)	scaffold_7:13869325-13870028(+) (10)	NA	Q6S001	Kinesin-related protein 11	AT5G66310.1	ATP binding microtubule motor family protein 	LOC_Os02g43130.1	"kinesin motor domain containing protein, expressed"	Medtr5g021580.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.207404.1.S1_at	A	A1MS	POPTR_0007s13860	POPTR_0007s13860 (11)	scaffold_7:13870825-13870947(+) (11)	NA	Q6S001	Kinesin-related protein 11	AT5G66310.1	ATP binding microtubule motor family protein 	LOC_Os02g43130.1	"kinesin motor domain containing protein, expressed"	Medtr5g021580.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.207405.1.S1_at	A	A1TS	POPTR_0007s13870	POPTR_0007s13870 (11)	scaffold_7:13886114-13886326(+) (11)	NA	C0LGS2	Probable LRR receptor-like serine/threonine-protein kinase At4g36180	AT4G36180.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g48760.1	"leucine-rich repeat family protein, putative, expressed"	Medtr5g021600.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207406.1.S1_s_at	A	A1TS	POPTR_0007s13900	POPTR_0007s13900 (11)	scaffold_7:13898114-13898292(-) (11)	NA	Q9SI62	Probable polyprenol reductase 2	AT2G16530.2	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os04g48750.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207407.1.S1_at	A	A1TS	POPTR_0007s13940	POPTR_0007s13940 (11)	scaffold_7:13931254-13931630(-) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	Medtr8g090220.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.207408.1.S1_at	A	A1TS	POPTR_0007s13970	POPTR_0007s13970 (11)	scaffold_7:13944163-13944734(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G36430.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207409.1.S1_at	A	A1TS	POPTR_0007s13980	POPTR_0007s13980 (11)	scaffold_7:13947103-13947538(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207410.1.S1_at	A	A1TS	POPTR_0007s13990	POPTR_0007s13990 (11)	scaffold_7:13952067-13952437(+) (11)	NA	Q7XM16	Zinc finger CCCH domain-containing protein 30	AT1G19860.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os04g56750.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g090190.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.207411.1.S1_s_at	A	A1TS	POPTR_0007s14030	POPTR_0007s14030 (11)	scaffold_7:13968962-13969493(+) (11)	NA	Q93ZN9	"LL-diaminopimelate aminotransferase, chloroplastic"	AT2G13810.1	AGD2-like defense response protein 1 	LOC_Os03g18810.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr2g008560.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.207412.1.S1_at	A	A1TS	POPTR_0007s14070	POPTR_0007s14070 (11)	scaffold_7:13988430-13988880(-) (11)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.2	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr5g021870.1	"Glycoside hydrolase, family 5; YEATS "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.207413.1.S1_at	A	A1TS	POPTR_0007s14100	POPTR_0007s14100 (11)	scaffold_7:14003496-14004456(-) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT3G50930.1	cytochrome BC1 synthesis 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr2g092810.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.207414.1.S1_at	A	A1TS	POPTR_0007s14130	POPTR_0007s14130 (11)	scaffold_7:14022050-14023055(+) (11)	NA	Q8LL11	Protein WUSCHEL	AT2G17950.1	Homeodomain-like superfamily protein 	LOC_Os04g56780.1	"homeobox domain containing protein, expressed"	Medtr5g021830.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.207415.1.S1_at	A	A1TS	POPTR_0007s14140	POPTR_0007s14140 (10)	scaffold_7:14027732-14028284(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT2G22600.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr5g033090.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.207415.1.S1_s_at	A	A2TS	POPTR_0007s14140	POPTR_0007s14160 (11)//POPTR_0007s14140 (11)	scaffold_7:14027935-14028121(-) (11)//scaffold_7:14033625-14033811(-) (11)//scaffold_7:14035305-14035491(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT2G22600.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr5g033090.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.207417.1.S1_at	A	A1TS	POPTR_0007s14200	POPTR_0007s14200 (10)	scaffold_7:14054916-14055585(+) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G65530.1	Protein kinase superfamily protein 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr5g033220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207418.1.S1_at	A	A1TS	POPTR_0007s14210	POPTR_0007s14210 (11)	scaffold_7:14058344-14058954(-) (11)	NA	Q52QU2	AP2-like ethylene-responsive transcription factor AIL6	AT5G10510.2	AINTEGUMENTA-like 6 	LOC_Os04g55970.2	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr5g033230.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.207419.1.S1_at	A	A1TS	POPTR_0007s14220	POPTR_0007s14220 (11)	scaffold_7:14069856-14070522(+) (11)	NA	Q9FGD7	Putative U-box domain-containing protein 50	AT5G65500.1	U-box domain-containing protein kinase family protein 	LOC_Os06g06760.3	"protein kinase, putative, expressed"	Medtr5g033380.1	Tyrosine protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.207420.1.S1_at	A	A1TS	POPTR_0007s14240	POPTR_0007s14240 (11)	scaffold_7:14080987-14081539(-) (11)	NA	NA	NA	AT2G22560.1	Kinase interacting (KIP1-like) family protein 	LOC_Os05g39000.1	"KIP1, putative, expressed"	Medtr5g075300.1	KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207422.1.S1_at	A	A1TS	POPTR_0007s14350	POPTR_0007s14350 (11)	scaffold_7:14162392-14165756(+) (11)	NA	Q5H8A4	GPI ethanolamine phosphate transferase 2	AT2G22530.1	Alkaline-phosphatase-like family protein 	LOC_Os02g54070.1	conserved hypothetical protein	Medtr5g033610.1	"transferase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207423.1.S1_at	A	A1TS	POPTR_0007s14350	POPTR_0007s14350 (10)	scaffold_7:14168203-14168956(+) (10)	NA	Q5H8A4	GPI ethanolamine phosphate transferase 2	AT2G22530.1	Alkaline-phosphatase-like family protein 	LOC_Os02g54070.1	conserved hypothetical protein	Medtr5g033610.1	"transferase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207424.1.S1_at	A	A1TS	POPTR_0007s14370	POPTR_0007s14370 (11)	scaffold_7:14173430-14173753(-) (11)	NA	P32438	IMPACT family member in pol 5'region (Fragment)	AT4G38090.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os08g37310.1	"uncharacterized protein, YigZ family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207425.1.S1_at	A	A1TS	POPTR_0007s14410	POPTR_0007s14410 (9)	scaffold_7:14191908-14194240(-) (9)	NA	B0XN12	"Probable glucan 1,3-beta-glucosidase A"	NA	NA	LOC_Os08g37750.1	"cellulase, putative, expressed"	Medtr3g102270.1	"Glycoside hydrolase, family 5; Actin-crosslinking proteins "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207426.1.S1_at	A	A1TS	POPTR_0007s14440	POPTR_0007s14440 (11)	scaffold_7:14210246-14210783(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207427.1.S1_at	A	A1TS	POPTR_0007s14460	POPTR_0007s14460 (10)	scaffold_7:14225167-14227522(+) (10)	NA	Q6MAS9	Glycogen synthase	AT5G65685.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g56320.1	"glycogen synthase 1, putative, expressed"	Medtr5g032130.1	Starch synthase catalytic region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207428.1.S1_at	A	A1TS	POPTR_0007s14490	POPTR_0007s14490 (11)	scaffold_7:14246633-14247869(+) (11)	NA	Q9T071	Probable hexokinase-like 2 protein	AT4G37840.1	hexokinase-like 3 	LOC_Os01g53930.1	"hexokinase, putative, expressed"	Medtr4g159960.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.207429.1.S1_at	A	A1TS	POPTR_0007s14500	POPTR_0007s14500 (11)	scaffold_7:14268583-14268831(+) (11)	NA	Q9SYQ8	Receptor protein kinase CLAVATA1	AT5G65700.2	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g56270.2	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr5g014870.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207430.1.S1_at	A	A1TS	POPTR_0007s14520	POPTR_0007s14520 (9)	scaffold_7:14287421-14287942(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207431.1.S1_at	A	A1TS	POPTR_0007s14530	POPTR_0007s14530 (10)	scaffold_7:14293378-14293950(+) (10)	NA	NA	NA	AT2G22790.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 111 Blast hits to 111 proteins in 33 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g28340.1	expressed protein	Medtr5g014950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207432.1.S1_s_at	A	A1TS	POPTR_0007s14560	POPTR_0007s14560 (11)	scaffold_7:14302785-14303106(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207432.1.S1_x_at	A	A1TS	POPTR_0007s14560	POPTR_0007s14560 (10)	scaffold_7:14302776-14303222(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207433.1.S1_at	A	A1TS	POPTR_0007s14640	POPTR_0007s14640 (11)	scaffold_7:14406190-14406713(-) (11)	NA	P37821	1-aminocyclopropane-1-carboxylate synthase	AT4G37770.1	1-amino-cyclopropane-1-carboxylate synthase 8 	LOC_Os03g51740.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g015160.1	Aminotransferases class-I pyridoxal-phosphate-binding site; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.207434.1.S1_at	A	A1TS	POPTR_0007s14660	POPTR_0007s14660 (11)	scaffold_7:14426384-14427082(-) (11)	NA	Q0WTB4	"GTP-binding protein At3g49725, chloroplastic"	AT3G49725.1	"GTP-binding protein, HflX "	LOC_Os03g51790.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr5g097010.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.207435.1.S1_at	A	A1TS	POPTR_0007s14700	POPTR_0007s14700 (11)	scaffold_7:14467927-14468438(-) (11)	NA	Q09851	Uncharacterized oxidoreductase C23D3.11	AT5G10050.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os12g43740.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr8g102040.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.207436.1.S1_at	A	A1TS	POPTR_0007s14770	POPTR_0007s14770 (10)	scaffold_7:14522045-14522702(-) (10)	NA	Q9SY57	Protein PHLOEM PROTEIN 2-LIKE A10	AT1G10150.1	Carbohydrate-binding protein 	LOC_Os03g56000.1	"PHLOEM 2-LIKE A10, putative, expressed"	Medtr5g015270.1	"Protein PHLOEM PROTEIN 2-LIKE A10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207437.1.S1_at	A	A1TS	POPTR_0007s14780	POPTR_0007s14780 (11)	scaffold_7:14527786-14528603(+) (11)	NA	NA	NA	AT5G65890.1	ACT domain repeat 1 	LOC_Os03g51990.1	"ACT domain containing protein, expressed"	Medtr5g015290.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.207438.1.S1_at	A	A1TS	POPTR_0007s14810	POPTR_0007s14810 (11)	scaffold_7:14538629-14539093(-) (11)	NA	NA	NA	AT4G37710.1	VQ motif-containing protein 	NA	NA	Medtr8g101860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207439.1.S1_at	A	A1TS	POPTR_0007s14830	POPTR_0007s14830 (11)	scaffold_7:14551132-14552053(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20744.1.A1_at	A	A1TS	POPTR_0006s06820	POPTR_0006s06820 (11)	scaffold_6:4934631-4935141(-) (11)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33430.1	"xyloglucanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207440.1.S1_at	A	A1TS	POPTR_0007s14860	POPTR_0007s14860 (11)	scaffold_7:14566763-14567422(-) (11)	NA	P42751	Cyclin-D1-1	AT1G70210.1	CYCLIN D1;1 	LOC_Os07g42860.1	"cyclin, putative, expressed"	Medtr5g036580.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207442.1.S1_at	A	A1TS	POPTR_0007s14920	POPTR_0007s14920 (11)	scaffold_7:14605581-14608172(+) (11)	NA	NA	NA	AT5G67580.2	Homeodomain-like/winged-helix DNA-binding family protein 	LOC_Os01g40670.1	"single myb histone, putative, expressed"	Medtr8g101640.1	"Linker histone, N-terminal; Homeodomain-like "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.207443.1.S1_at	A	A1TS	POPTR_0007s14930	POPTR_0007s14930 (11)	scaffold_7:14610428-14610796(-) (11)	NA	Q9FJW6	"Pentatricopeptide repeat-containing protein At5g67570, chloroplastic"	AT5G67570.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g25060.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g101620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207444.1.S1_at	A	A1TS	POPTR_0007s14940	POPTR_0007s14940 (11)	scaffold_7:14617342-14617917(+) (11)	NA	Q9M2V6	ABC transporter G family member 17	AT3G55100.1	ABC-2 type transporter family protein 	LOC_Os09g23640.1	ABC-2 type transporter domain containing protein	Medtr5g032390.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.207445.1.S1_at	A	A1TS	POPTR_0007s14950	POPTR_0007s14950 (11)	scaffold_7:14626997-14627644(+) (11)	NA	Q8L4H4	Nodulation receptor kinase	AT2G37050.3	Leucine-rich repeat protein kinase family protein 	LOC_Os07g38070.1	"protein kinase, putative, expressed"	Medtr5g032400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207446.1.S1_at	A	A1TS	POPTR_0007s14980	POPTR_0007s14980 (11)	scaffold_7:14650362-14650700(+) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207447.1.S1_s_at	A	A3TS	POPTR_0007s14980	POPTR_0007s14980 (11)//POPTR_0007s14990 (11)//POPTR_0007s15000 (11)	scaffold_7:14649815-14650150(+) (11)//scaffold_7:14659340-14659675(+) (11)//scaffold_7:14665594-14665929(+) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207448.1.S1_at	A	A1TS	POPTR_0007s14990	POPTR_0007s14990 (11)	scaffold_7:14659890-14660244(+) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207449.1.S1_at	A	A1TS	POPTR_0007s15010	POPTR_0007s15010 (11)	scaffold_7:14668594-14669128(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207450.1.S1_s_at	A	A1TS	POPTR_0007s15020	POPTR_0007s15020 (11)	scaffold_7:14671317-14673204(-) (11)	NA	P93736	Valyl-tRNA synthetase	AT1G14610.1	valyl-tRNA synthetase / valine--tRNA ligase (VALRS) 	LOC_Os03g48850.2	"valyl-tRNA synthetase, putative, expressed"	Medtr1g129510.1	"Isoleucyl-tRNA synthetase, class Ia; "	GO:0006438|valyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004832|valine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.207451.1.S1_at	A	A1TS	POPTR_0007s15030	POPTR_0007s15030 (11)	scaffold_7:14680357-14681055(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207452.1.S1_at	A	A1TS	POPTR_0007s15050	POPTR_0007s15050 (10)	scaffold_7:14698821-14699010(-) (10)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G32910.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g51980.1	"transferase family domain containing protein, expressed"	Medtr5g097970.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.207453.1.S1_at	A	A1TS	POPTR_0007s15100	POPTR_0007s15100 (11)	scaffold_7:14740436-14740687(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207455.1.S1_at	A	A1TS	POPTR_0007s15130	POPTR_0007s15130 (10)	scaffold_7:14769952-14770914(+) (10)	NA	Q2XWK0	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os09g38690.1	"transporter family protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.207456.1.S1_at	A	A1TS	POPTR_0007s15140	POPTR_0007s15140 (11)	scaffold_7:14771704-14772149(-) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207457.1.S1_at	A	A1TS	POPTR_0007s15170	POPTR_0007s15170 (11)	scaffold_7:14788223-14789278(+) (11)	NA	Q6R2K1	Protein STRUBBELIG-RECEPTOR FAMILY 5	AT1G78980.1	STRUBBELIG-receptor family 5 	LOC_Os07g42626.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g163300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207458.1.S1_at	A	A1TS	POPTR_0007s15220	POPTR_0007s15220 (11)	scaffold_7:14840039-14840549(+) (11)	NA	Q9LPT1	Probably inactive leucine-rich repeat receptor-like protein kinase At1g50610	AT3G20190.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g45240.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr4g161170.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207459.1.S1_at	A	A1TS	POPTR_0007s15230	POPTR_0007s15230 (11)	scaffold_7:14846257-14846794(+) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT1G16760.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os06g09230.2	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.20746.1.S1_at	A	A1TS	POPTR_0014s13780	POPTR_0014s13780 (11)	scaffold_14:10086311-10086810(-) (11)	NA	Q94J16	Heat stress transcription factor A-4b	AT4G18880.1	heat shock transcription factor  A4A 	LOC_Os01g54550.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g135910.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.207460.1.S1_at	A	A1TS	POPTR_0007s15240	POPTR_0007s15240 (11)	scaffold_7:14849214-14850607(+) (11)	NA	NA	NA	AT1G78930.1	Mitochondrial transcription termination factor family protein 	LOC_Os09g38720.1	"mTERF domain containing protein, expressed"	Medtr4g095610.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207461.1.S1_s_at	A	A2MS	POPTR_0007s15280	POPTR_0007s15280 (11)//POPTR_0007s15250 (10)	scaffold_7:14857563-14858371(+) (10)//scaffold_7:14868647-14869452(+) (11)	NA	NA	NA	AT1G78922.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g15800.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207462.1.S1_at	A	A1MS	POPTR_0007s15260	POPTR_0007s15260 (10)	scaffold_7:14859469-14860749(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207463.1.S1_at	A	A1TS	POPTR_0007s15280	POPTR_0007s15280 (11)	scaffold_7:14868819-14869114(+) (11)	NA	NA	NA	AT1G78922.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g15800.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207464.1.S1_at	A	A1TS	POPTR_0007s15290	POPTR_0007s15290 (11)	scaffold_7:14878593-14878652(+) (11)	NA	Q59536	Protease 2	AT1G50380.1	Prolyl oligopeptidase family protein 	LOC_Os06g51410.1	"OsPOP15 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.207465.1.S1_at	A	A1TS	POPTR_0007s15370	POPTR_0007s15370 (11)	scaffold_7:14928015-14928643(-) (11)	NA	NA	NA	AT3G12340.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g12270.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g033730.1	"FKBP-type peptidyl-prolyl cis-trans isomerase, putative; 96901-102074, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207466.1.S1_at	A	A1TS	POPTR_0007s15380	POPTR_0007s15380 (11)	scaffold_7:14939912-14940633(-) (11)	NA	Q84WN0	"Uncharacterized protein At4g37920, chloroplastic"	AT4G37920.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36320.1); Has 123 Blast hits to 120 proteins in 40 species: Archae - 2; Bacteria - 11; Metazoa - 8; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os01g20110.1	expressed protein	Medtr5g032370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207468.1.S1_s_at	A	A1TA	POPTR_0007s15430	POPTR_0007s15430 (11)	scaffold_7:14961716-14962127(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207469.1.S1_at	A	A1TS	POPTR_0008s00290	POPTR_0008s00290 (11)	scaffold_8:72939-75992(-) (11)	NA	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog 1	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58130.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207470.1.S1_at	A	A1TS	POPTR_0008s00300	POPTR_0008s00300 (11)	scaffold_8:85925-88958(+) (11)	NA	Q94C60	Transcription elongation factor SPT4 homolog 2	AT5G63670.1	SPT4 homolog 2 	LOC_Os07g43060.2	"transcription elongation factor SPT4 homolog 1, putative, expressed"	Medtr3g122710.1	Transcription initiation Spt4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045941|positive regulation of transcription	GO:0008270|zinc ion binding||GO:0008159|positive transcription elongation factor activity	GO:0005634|nucleus
PtpAffx.207471.1.S1_at	A	A1TS	POPTR_0008s00320	POPTR_0008s00320 (11)	scaffold_8:94392-95742(-) (11)	NA	Q9Y5B6	GC-rich sequence DNA-binding factor 1	AT5G08550.1	GC-rich sequence DNA-binding factor-like protein 	LOC_Os03g63670.2	expressed protein	Medtr5g007630.1	GC-rich sequence DNA-binding factor-like 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.207472.1.S1_at	A	A1TS	POPTR_0008s00320	POPTR_0008s00320 (9)	scaffold_8:98435-99161(-) (11)	NA	Q9Y5B6	GC-rich sequence DNA-binding factor 1	AT5G08550.1	GC-rich sequence DNA-binding factor-like protein 	LOC_Os03g63670.2	expressed protein	Medtr5g007630.1	GC-rich sequence DNA-binding factor-like 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.207473.1.S1_at	A	A1TS	POPTR_0008s00330	POPTR_0008s00330 (11)	scaffold_8:101006-101739(-) (11)	NA	Q28D01	WD repeat-containing protein 26	AT5G08560.2	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207475.1.S1_at	A	A1TS	POPTR_0008s00410	POPTR_0008s00410 (11)	scaffold_8:156109-157046(+) (11)	NA	P49047	Vacuolar-processing enzyme alpha-isozyme	AT2G25940.1	alpha-vacuolar processing enzyme 	LOC_Os01g37910.1	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr3g140280.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.207476.1.S1_at	A	A1TS	POPTR_0008s00420	POPTR_0008s00420 (11)	scaffold_8:160011-161031(+) (11)	NA	Q9FWR2	Pyrophosphate-energized membrane proton pump 3	AT1G16780.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g33490.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.2	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.207478.1.S1_at	A	A1TS	POPTR_0008s00450	POPTR_0008s00450 (11)	scaffold_8:185075-185374(-) (11)	NA	P33082	Auxin-induced protein X15	AT2G24400.1	SAUR-like auxin-responsive protein family  	LOC_Os04g51890.1	"OsSAUR20 - Auxin-responsive SAUR gene family member, expressed"	Medtr3g133040.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207479.1.S1_at	A	A1TS	POPTR_0008s00460	POPTR_0008s00460 (11)	scaffold_8:187549-187931(-) (11)	NA	NA	NA	AT1G16800.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207480.1.S1_s_at	A	A1TS	POPTR_0008s00510	POPTR_0008s00510 (11)	scaffold_8:214743-214894(-) (11)	NA	NA	NA	AT3G20270.3	lipid-binding serum glycoprotein family protein 	LOC_Os09g32240.1	"OsFBX332 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207481.1.S1_at	A	A1TS	POPTR_0008s00520	POPTR_0008s00520 (11)	scaffold_8:218590-219279(+) (11)	NA	Q8LBL1	Calcium-activated outward-rectifying potassium channel 1	AT5G55630.2	Outward rectifying potassium channel protein 	LOC_Os03g54100.2	"potassium channel protein, putative, expressed"	Medtr5g103230.1	"Calcium-activated outward-rectifying potassium channel 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207482.1.S1_at	A	A1TS	POPTR_0008s00540	POPTR_0008s00540 (11)	scaffold_8:224918-225477(-) (11)	NA	NA	NA	AT1G51080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 101 Blast hits to 98 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). 	LOC_Os03g04580.1	expressed protein	Medtr2g122500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207484.1.S1_at	A	A1TS	POPTR_0008s00570	POPTR_0008s00570 (11)	scaffold_8:238212-238761(-) (11)	NA	O49543	"Cysteine desulfurase 1, mitochondrial"	AT5G65720.1	nitrogen fixation S (NIFS)-like 1 	LOC_Os09g16910.3	"cysteine desulfurase 1, mitochondrial precursor, putative, expressed"	Medtr5g014960.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207486.1.S1_at	A	A1TS	POPTR_0008s00670	POPTR_0008s00670 (11)	scaffold_8:309619-309777(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207486.1.S1_x_at	A	A1TS	POPTR_0008s00670	POPTR_0008s00670 (11)	scaffold_8:308770-309777(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207487.1.S1_at	A	A1TS	POPTR_0008s00730	POPTR_0008s00730 (11)	scaffold_8:334053-334909(+) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os12g06740.1	"OsFBX440 - F-box domain containing protein, expressed"	Medtr3g008660.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207488.1.S1_at	A	A1TS	POPTR_0008s00740	POPTR_0008s00740 (11)	scaffold_8:337983-338510(+) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr5g066520.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207489.1.S1_at	A	A1TS	POPTR_0008s00760	POPTR_0008s00760 (11)	scaffold_8:345108-345666(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207490.1.S1_at	A	A1TS	POPTR_0008s00770	POPTR_0008s00770 (11)	scaffold_8:346329-346836(-) (11)	NA	NA	NA	AT3G57880.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr7g111440.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207491.1.S1_at	A	A1TS	POPTR_0008s00780	POPTR_0008s00780 (11)	scaffold_8:348880-349216(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207492.1.S1_at	A	A1TS	POPTR_0008s00790	POPTR_0008s00790 (11)	scaffold_8:349987-351066(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g040960.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207493.1.S1_at	A	A1TS	POPTR_0008s00810	POPTR_0008s00810 (11)	scaffold_8:366161-366764(+) (11)	NA	P93194	Receptor-like protein kinase	AT1G73080.1	PEP1 receptor 1 	LOC_Os08g34650.2	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g112220.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207494.1.S1_at	A	A1TS	POPTR_0008s00820	POPTR_0008s00820 (11)	scaffold_8:372111-372773(+) (11)	NA	Q39044	Vacuolar-processing enzyme beta-isozyme	AT1G62710.1	beta vacuolar processing enzyme 	LOC_Os01g37910.3	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr3g140280.1	"Peptidase C13, legumain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207495.1.S1_at	A	A1TS	POPTR_0008s00870	POPTR_0008s00870 (10)	scaffold_8:408946-414783(-) (11)	NA	P23111	Cell division control protein 2 homolog	AT3G48750.1	cell division control 2 	LOC_Os03g01850.1	"cyclin-dependent kinase A-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207496.1.S1_at	A	A1TS	POPTR_0008s00900	POPTR_0008s00900 (10)	scaffold_8:423346-424565(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207497.1.S1_at	A	A1TS	POPTR_0008s00910	POPTR_0008s00910 (11)	scaffold_8:439319-439909(+) (11)	NA	O54922	Exocyst complex component 7	AT4G31540.1	exocyst subunit exo70 family protein G1 	LOC_Os06g48330.1	"ATEXO70G1, putative, expressed"	Medtr1g010470.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.207498.1.S1_at	A	A1TS	POPTR_0008s00920	POPTR_0008s00920 (9)	scaffold_8:441451-442211(-) (11)	NA	NA	NA	AT3G21200.1	proton gradient regulation 7 	LOC_Os08g15500.1	expressed protein	Medtr4g022840.1	FMN-binding split barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207499.1.S1_at	A	A1TS	POPTR_0008s00970	POPTR_0008s00970 (11)	scaffold_8:457032-457653(-) (11)	NA	P93194	Receptor-like protein kinase	AT1G73080.1	PEP1 receptor 1 	LOC_Os08g34640.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g112220.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207500.1.S1_at	A	A1TS	POPTR_0008s01040	POPTR_0008s01040 (11)	scaffold_8:493642-494430(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207501.1.S1_at	A	A1TS	POPTR_0008s01050	POPTR_0008s01050 (11)	scaffold_8:496228-496881(+) (11)	NA	Q9LSG3	Galacturonosyltransferase 8	AT3G25140.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os02g29530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g062010.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.207502.1.S1_at	A	A1TS	POPTR_0008s01060	POPTR_0008s01060 (11)	scaffold_8:497401-497979(-) (11)	NA	NA	NA	AT2G28690.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.2	expressed protein	Medtr4g079030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207503.1.S1_at	A	A1TS	POPTR_0008s01100	POPTR_0008s01100 (11)	scaffold_8:521285-522359(+) (11)	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207504.1.S1_at	A	A1TS	POPTR_0008s01160	POPTR_0008s01160 (11)	scaffold_8:558846-559958(+) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT5G04980.2	DNAse I-like superfamily protein 	LOC_Os05g41000.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr8g047490.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207505.1.S1_at	A	A1TS	POPTR_0008s01180	POPTR_0008s01180 (11)	scaffold_8:565700-566025(+) (11)	NA	Q94CB1	Probable pectinesterase/pectinesterase inhibitor 25	AT3G10720.2	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g20980.1	"pectinesterase, putative, expressed"	Medtr3g016300.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.207506.1.S1_at	A	A1MS	POPTR_0008s01210	POPTR_0008s01210 (11)	scaffold_8:591075-591983(+) (11)	NA	A0AAR7	Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase	AT3G10660.1	calmodulin-domain protein kinase cdpk isoform 2 	LOC_Os05g41090.1	"CAMK_CAMK_like_CG18020d.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g047760.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207507.1.S1_at	A	A1TS	POPTR_0008s01220	POPTR_0008s01220 (11)	scaffold_8:596950-597290(-) (11)	NA	NA	NA	AT3G11591.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr3g076800.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207508.1.S1_at	A	A1TS	POPTR_0008s01260	POPTR_0008s01260 (10)	scaffold_8:607909-610565(-) (10)	NA	Q6X5Y6	Ethylene-responsive transcription factor WRI1	AT3G54320.3	Integrase-type DNA-binding superfamily protein 	LOC_Os11g03540.1	"AP2 domain containing protein, expressed"	Medtr8g047830.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.207509.1.S1_at	A	A1TS	POPTR_0008s01270	POPTR_0008s01270 (11)	scaffold_8:613084-613983(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g03550.1	expressed protein	Medtr8g047880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207510.1.S1_at	A	A1TS	POPTR_0008s01290	POPTR_0008s01290 (10)	scaffold_8:628383-628893(-) (10)	NA	NA	NA	AT5G18440.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink). "	LOC_Os01g59860.1	expressed protein	AC233682_40.1	hypothetical protein AC233682.2 154897-152825 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207513.1.S1_at	A	A1TS	POPTR_0008s01360	POPTR_0008s01360 (11)	scaffold_8:663236-664037(+) (11)	NA	Q28891	3-oxo-5-alpha-steroid 4-dehydrogenase 1	AT5G16010.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os07g06800.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr6g041190.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.207514.1.S1_at	A	A1TS	POPTR_0008s01350	POPTR_0008s01350 (11)	scaffold_8:664821-665084(+) (11)	NA	NA	NA	AT5G16010.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207515.1.S1_at	A	A1TS	POPTR_0008s01370	POPTR_0008s01370 (11)	scaffold_8:667577-668286(+) (11)	NA	Q55C17	"Trans-2,3-enoyl-CoA reductase"	AT5G16010.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os07g06800.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr6g041190.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.207516.1.S1_at	A	A1TS	POPTR_0008s01390	POPTR_0008s01390 (11)	scaffold_8:673115-673888(+) (11)	NA	Q5IH13	Sucrose-phosphatase 2	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os01g27880.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.207517.1.S1_at	A	A1TS	POPTR_0008s01410	POPTR_0008s01410 (11)	scaffold_8:679989-680917(-) (11)	NA	Q23892	Lysosomal beta glucosidase	AT5G04885.1	Glycosyl hydrolase family protein 	LOC_Os03g53800.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr2g129480.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.207518.1.S1_at	A	A1TS	POPTR_0008s01430	POPTR_0008s01430 (11)	scaffold_8:689628-690266(-) (11)	NA	Q23892	Lysosomal beta glucosidase	AT5G20950.2	Glycosyl hydrolase family protein 	LOC_Os03g53800.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.207519.1.S1_at	A	A1TS	POPTR_0008s01450	POPTR_0008s01450 (11)	scaffold_8:698469-698963(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207520.1.S1_at	A	A1TS	POPTR_0008s01460	POPTR_0008s01460 (11)	scaffold_8:701602-702188(+) (11)	NA	NA	NA	AT3G10680.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr8g050100.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207521.1.S1_at	A	A1TS	POPTR_0008s01470	POPTR_0008s01470 (11)	scaffold_8:713067-714338(+) (11)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT5G04895.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.207521.1.S1_x_at	A	A1TS	POPTR_0008s01470	POPTR_0008s01470 (11)	scaffold_8:713067-714527(+) (11)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT5G04895.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.207523.1.S1_at	A	A1TS	POPTR_0008s01490	POPTR_0008s01490 (11)	scaffold_8:724030-724998(+) (11)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT3G03770.2	Leucine-rich repeat protein kinase family protein 	LOC_Os07g07230.2	"protein kinase, putative, expressed"	Medtr7g103210.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.207524.1.S1_at	A	A1TS	POPTR_0008s01500	POPTR_0008s01500 (11)	scaffold_8:725691-726248(-) (11)	NA	P98204	Phospholipid-transporting ATPase 1	AT5G04930.1	aminophospholipid ATPase 1 	LOC_Os03g20949.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr8g047980.1	Haloacid dehalogenase-like hydrolase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.207524.1.S1_s_at	A	A1TS	POPTR_0008s01500	POPTR_0008s01500 (11)	scaffold_8:725739-726468(-) (11)	NA	P98204	Phospholipid-transporting ATPase 1	AT5G04930.1	aminophospholipid ATPase 1 	LOC_Os03g20949.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr8g047980.1	Haloacid dehalogenase-like hydrolase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.207526.1.S1_s_at	A	A1TS	POPTR_0008s01540	POPTR_0008s01540 (11)	scaffold_8:764442-766408(+) (11)	NA	NA	NA	AT3G10650.1	BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). 	LOC_Os03g57430.1	expressed protein	Medtr1g112090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207527.1.S1_s_at	A	A2TS	POPTR_0008s01550	POPTR_0162s00270 (11)//POPTR_0008s01550 (11)	scaffold_162:40991-41375(+) (11)//scaffold_8:769455-769836(-) (11)	POPTR_0162s00320 (7)//POPTR_0008s01610 (7)	NA	NA	AT5G22040.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os03g16730.1	expressed protein	Medtr1g112100.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207528.1.S1_at	A	A1TS	POPTR_0008s01630	POPTR_0008s01630 (10)	scaffold_8:797754-798210(+) (10)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207528.1.S1_x_at	A	A1TS	POPTR_0008s01630	POPTR_0008s01630 (10)	scaffold_8:797754-798383(+) (10)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207529.1.S1_s_at	A	A3TS	POPTR_0008s01570	POPTR_0008s01570 (11)//POPTR_0162s00300 (11)//POPTR_0008s01640 (11)	scaffold_162:47549-47774(-) (11)//scaffold_8:776463-776688(+) (11)//scaffold_8:798997-799222(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g119490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207530.1.S1_at	A	A1TS	POPTR_0008s01660	POPTR_0008s01660 (11)	scaffold_8:805033-805660(+) (11)	NA	NA	NA	AT1G73970.1	unknown protein; Has 34 Blast hits to 33 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g03090.1	expressed protein	Medtr3g016590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207532.1.S1_at	A	A1TS	POPTR_0008s01730	POPTR_0008s01730 (11)	scaffold_8:831327-832415(-) (11)	NA	NA	NA	AT5G04760.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g34060.1	"MYB family transcription factor, putative, expressed"	Medtr8g073480.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207533.1.S1_at	A	A1TS	POPTR_0008s01740	POPTR_0008s01740 (11)	scaffold_8:833477-833844(+) (11)	NA	Q652P9	Germin-like protein 9-3	AT1G02335.1	germin-like protein subfamily 2 member 2 precursor 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107650.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.207534.1.S1_at	A	A1TS	POPTR_0008s01750	POPTR_0008s01750 (9)	scaffold_8:834869-835307(-) (11)	NA	Q652P9	Germin-like protein 9-3	AT3G62020.2	germin-like protein 10 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107660.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.207535.1.S1_at	A	A1TS	POPTR_0008s01760	POPTR_0008s01760 (11)	scaffold_8:836281-836841(+) (11)	NA	Q652P9	Germin-like protein 9-3	AT4G14630.1	germin-like protein 9 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107650.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.207536.1.S1_at	A	A1TS	POPTR_0008s01790	POPTR_0008s01790 (11)	scaffold_8:846327-846990(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207538.1.S1_at	A	A1TS	POPTR_0008s01840	POPTR_0008s01840 (11)	scaffold_8:876152-876608(+) (11)	NA	NA	NA	AT5G04820.1	ovate family protein 13 	LOC_Os01g64410.1	"ATOFP18/OFP18, putative, expressed"	AC146630_8.1	Uncharacterized plant-specific domain AC146630.25 44746-43647 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207539.1.S1_at	A	A1TS	POPTR_0008s01850	POPTR_0008s01850 (11)	scaffold_8:884707-885162(+) (11)	NA	P42730	Heat shock protein 101	AT3G52490.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g33980.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr1g112350.1	"Immunoglobulin/major histocompatibility complex; Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207540.1.S1_at	A	A1MS	POPTR_0008s01860	POPTR_0008s01860 (10)	scaffold_8:891924-893281(-) (10)	NA	NA	NA	AT5G04830.2	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os01g73500.1	expressed protein	Medtr1g112320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207541.1.S1_at	A	A1TS	POPTR_0008s01890	POPTR_0008s01890 (11)	scaffold_8:908521-908983(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207542.1.S1_at	A	A1TS	POPTR_0008s01900	POPTR_0008s01900 (11)	scaffold_8:910216-910638(-) (11)	NA	Q9M8J2	Probable galacturonosyltransferase-like 4	AT3G06260.1	galacturonosyltransferase-like 4 	LOC_Os03g24510.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g111450.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.207542.1.S1_s_at	A	A2TS	POPTR_0008s01900	POPTR_0008s01900 (11)//POPTR_0010s24860 (11)	scaffold_10:20840826-20841411(-) (11)//scaffold_8:910170-910755(-) (11)	NA	Q9M8J2	Probable galacturonosyltransferase-like 4	AT3G06260.1	galacturonosyltransferase-like 4 	LOC_Os03g24510.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g111450.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.207543.1.S1_at	A	A1TS	POPTR_0008s01970	POPTR_0008s01970 (11)	scaffold_8:941208-941621(+) (11)	NA	Q8RX29	RING-H2 finger protein ATL70	AT2G35910.1	RING/U-box superfamily protein 	LOC_Os07g06560.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g149630.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207545.1.S1_at	A	A1MS	POPTR_0341s00210	POPTR_0341s00210 (10)	scaffold_341:9072-9476(+) (10)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207546.1.S1_at	A	A1TS	POPTR_0008s02010	POPTR_0008s02010 (11)	scaffold_341:15861-16101(-) (11)//scaffold_8:964740-964980(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207547.1.S1_at	A	A1TS	POPTR_0008s02040	POPTR_0008s02040 (11)	scaffold_8:984194-985203(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g29920.1	"retrotransposon protein, putative, unclassified"	Medtr1g126820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207548.1.S1_at	A	A1TS	POPTR_0008s02050	POPTR_0008s02050 (11)	scaffold_8:989559-990151(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207549.1.S1_at	A	A1TS	POPTR_0008s02060	POPTR_0008s02060 (11)	scaffold_8:992875-993996(+) (11)	NA	NA	NA	AT3G54290.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); Has 59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os01g64250.1	"hemerythrin family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20755.1.S1_at	A	A1TS	POPTR_0001s36610	POPTR_0001s36610 (9)	scaffold_1:35297845-35298382(+) (11)	NA	O80339	Ethylene-responsive transcription factor 3	AT1G50640.1	ethylene responsive element binding factor 3 	LOC_Os02g09650.1	"AP2 domain containing protein, expressed"	Medtr5g092410.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.207550.1.S1_at	A	A1TS	POPTR_0008s02070	POPTR_0008s02070 (11)	scaffold_8:996530-998125(+) (11)	NA	Q9SEZ6	Ribonuclease H2 subunit A	AT2G25100.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os11g05570.1	"RNASEH2A - Putative ribonuclease H2 large subunit, expressed"	NA	NA	NA	GO:0004523|ribonuclease H activity||GO:0003723|RNA binding	NA
PtpAffx.207551.1.S1_at	A	A1TS	POPTR_0008s02120	POPTR_0008s02120 (9)	scaffold_8:1011795-1012270(-) (9)	NA	NA	NA	AT3G18650.1	AGAMOUS-like 103 	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.207552.1.S1_at	A	A1TS	POPTR_0008s02150	POPTR_0008s02150 (11)	scaffold_8:1019707-1020276(-) (11)	NA	NA	NA	AT5G22450.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73620.1	expressed protein	Medtr4g070070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207553.1.S1_at	A	A1TS	POPTR_0008s02180	POPTR_0008s02180 (11)	scaffold_8:1041577-1041649(-) (11)	NA	NA	NA	AT3G54260.1	TRICHOME BIREFRINGENCE-LIKE 36 	LOC_Os03g18110.1	"proteins of unknown function domain containing protein, putative, expressed"	Medtr5g079650.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207554.1.S1_at	A	A1MS	POPTR_0008s02220	POPTR_0008s02220 (10)	scaffold_8:1061061-1062012(-) (10)	NA	NA	NA	AT3G48410.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os04g33590.2	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207555.1.S1_at	A	A1TS	POPTR_0008s02240	POPTR_0008s02240 (11)	scaffold_8:1069836-1072787(-) (11)	NA	NA	NA	AT3G56160.1	Sodium Bile acid symporter family 	LOC_Os02g32930.1	"bile acid sodium symporter, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207556.1.S1_at	A	A1TS	POPTR_0008s02250	POPTR_0008s02250 (11)	scaffold_8:1078494-1080246(+) (11)	NA	Q2HJH1	Aspartyl aminopeptidase	AT5G04710.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os01g73680.1	"aspartyl aminopeptidase, putative, expressed"	Medtr1g117900.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
PtpAffx.207557.1.S1_at	A	A2TS	POPTR_0008s02290	POPTR_0008s02290 (10)//POPTR_0475s00200 (10)	scaffold_475:2155-3366(+) (10)//scaffold_8:1101121-1102323(+) (10)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT3G20930.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g49820.1	"RNA recognition motif family protein, expressed"	Medtr1g117240.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.207558.1.S1_at	A	A1TS	POPTR_0008s02310	POPTR_0008s02310 (11)	scaffold_8:1109688-1110437(+) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117180.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207558.1.S1_s_at	A	A1TS	POPTR_0008s02310	POPTR_0008s02310 (11)	scaffold_475:11114-11563(+) (11)//scaffold_8:1110426-1110875(+) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117180.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207560.1.S1_at	A	A1TS	POPTR_0475s00220	POPTR_0475s00220 (11)	scaffold_475:15943-16430(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074430.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.207561.1.S1_at	A	A1TS	POPTR_0008s02350	POPTR_0008s02350 (11)	scaffold_8:1130078-1130472(+) (11)	POPTR_0008s02380 (6)	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr5g098460.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207562.1.S1_s_at	A	A1TS	POPTR_0008s02370	POPTR_0008s02370 (11)	scaffold_8:1140479-1140789(+) (11)	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	NA	NA	Medtr5g028460.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207564.1.S1_s_at	A	A1TS	POPTR_0008s02400	POPTR_0008s02400 (11)	scaffold_8:1163328-1163665(+) (11)//scaffold_8:1169118-1169294(+) (9)	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	NA	NA	Medtr5g028460.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207565.1.S1_at	A	A1MS	POPTR_0008s02420	POPTR_0008s02420 (10)	scaffold_8:1176913-1177810(+) (10)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr5g028360.1	"ankyrin repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207566.1.S1_s_at	A	A1TS	POPTR_0008s02450	POPTR_0008s02450 (11)	scaffold_8:1188356-1188859(-) (11)	NA	A2YBX5	Protein kinase G11A	AT3G44610.1	Protein kinase superfamily protein 	LOC_Os11g05320.1	"AGC_PVPK_like_kin82y.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207567.1.S1_at	A	A1MS	POPTR_0008s02470	POPTR_0008s02470 (11)	scaffold_8:1206685-1207244(+) (11)	NA	NA	NA	AT5G04670.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os02g01020.1	expressed protein	Medtr1g117100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207568.1.S1_at	A	A1MS	POPTR_0008s02490	POPTR_0008s02490 (11)	scaffold_8:1220780-1220817(-) (11)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os03g06340.1	"XS domain containing protein, expressed"	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207568.1.S1_x_at	A	A1MS	POPTR_0008s02490	POPTR_0008s02490 (10)	scaffold_8:1220613-1220817(-) (10)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os03g06340.1	"XS domain containing protein, expressed"	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207569.1.S1_at	A	A1TS	POPTR_0008s02490	POPTR_0008s02490 (10)	scaffold_8:1222254-1222827(-) (10)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os03g06340.1	"XS domain containing protein, expressed"	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207570.1.S1_at	A	A1MS	POPTR_0008s02500	POPTR_0008s02500 (11)	scaffold_8:1226978-1227213(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207572.1.S1_at	A	A1TS	POPTR_0008s02520	POPTR_0008s02520 (9)	scaffold_8:1234450-1234986(-) (11)	NA	Q8GVE3	Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase	AT5G65550.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g47550.1	"glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207573.1.S1_at	A	A1TS	POPTR_0008s02530	POPTR_0008s02530 (11)	scaffold_8:1235778-1236721(-) (11)	NA	Q8GVE3	Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase	AT5G54010.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g47550.1	"glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207574.1.S1_s_at	A	A1TS	POPTR_0008s02580	POPTR_0008s02580 (11)	scaffold_8:1272725-1273173(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT5G03680.1	Duplicated homeodomain-like superfamily protein 	LOC_Os10g37240.4	expressed protein	Medtr1g116980.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207575.1.S1_at	A	A1TS	POPTR_0008s02590	POPTR_0008s02590 (11)	scaffold_8:1281022-1281233(+) (11)	NA	NA	NA	AT4G40045.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g068520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207576.1.S1_s_at	A	A1TS	POPTR_0008s02610	POPTR_0008s02610 (11)	scaffold_8:1300364-1301198(-) (11)	NA	Q8LK56	Transcriptional activator DEMETER	AT5G04560.1	HhH-GPD base excision DNA repair family protein 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	NA
PtpAffx.207577.1.S1_at	A	A1TS	POPTR_0008s02610	POPTR_0008s02610 (9)	scaffold_8:1305693-1307550(-) (9)	NA	Q8LK56	Transcriptional activator DEMETER	AT5G04560.1	HhH-GPD base excision DNA repair family protein 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	NA
PtpAffx.207578.1.S1_at	A	A1TS	POPTR_0008s02620	POPTR_0008s02620 (11)	scaffold_8:1321955-1323527(+) (11)	NA	NA	NA	AT3G57810.1	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr3g103530.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207578.1.S1_x_at	A	A1TS	POPTR_0008s02620	POPTR_0008s02620 (11)	scaffold_8:1321955-1323591(+) (11)	NA	NA	NA	AT3G57810.1	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr3g103530.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207579.1.S1_s_at	A	A2TS	POPTR_0008s02630	POPTR_0008s02630 (11)//POPTR_0008s02640 (11)	scaffold_8:1325235-1325876(-) (11)//scaffold_8:1333120-1333761(-) (11)	NA	Q05047	Secologanin synthase	AT5G24910.1	"cytochrome P450, family 714, subfamily A, polypeptide 1 "	LOC_Os12g02640.1	"cytochrome P450 72A1, putative, expressed"	Medtr8g008330.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.207582.1.S1_at	A	A1MS	POPTR_0008s02660	POPTR_0008s02660 (10)	scaffold_8:1350231-1351122(-) (10)	NA	NA	NA	AT2G28600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	NA	NA	Medtr1g068500.1	"Putative ATP-dependent RNA helicase, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207584.1.S1_at	A	A1TS	POPTR_0008s02740	POPTR_0008s02740 (10)	scaffold_8:1398383-1398416(+) (10)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.207585.1.S1_at	A	A1TS	POPTR_0008s02750	POPTR_0008s02750 (11)	scaffold_8:1399309-1399595(+) (11)	NA	NA	NA	AT1G31200.1	phloem protein 2-A9 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207588.1.S1_s_at	A	A2TS	POPTR_0008s02800	POPTR_0008s02800 (11)//POPTR_0008s02780 (10)	scaffold_8:1415746-1423242(+) (11)//scaffold_8:1422982-1423575(+) (10)	NA	P29136	Metalloendoproteinase 1	AT1G24140.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr6g009200.1	Peptidoglycan binding-like 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.207589.1.S1_at	A	A1TS	POPTR_0008s02780	POPTR_0008s02780 (10)	scaffold_8:1415837-1417414(+) (11)	NA	P29136	Metalloendoproteinase 1	AT1G24140.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g037460.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.207591.1.S1_x_at	A	A1TS	POPTR_0008s03090	POPTR_0008s03090 (11)	scaffold_8:1617921-1625843(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207592.1.S1_at	A	A1TS	POPTR_0008s03100	POPTR_0008s03100 (11)	scaffold_8:1629619-1630078(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207593.1.S1_at	A	A2TS	POPTR_0008s02810	POPTR_0008s02810 (10)//POPTR_0008s02830 (9)	scaffold_8:1430764-1436081(-) (11)//scaffold_8:1435742-1441683(-) (11)//scaffold_8:1441344-1451371(-) (9)	POPTR_0008s02820 (8)//POPTR_0001s21010 (6)//POPTR_0001s21070 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207593.1.S1_x_at	A	A1TS	POPTR_0008s02810	POPTR_0008s02810 (10)	scaffold_8:1430773-1436081(-) (11)//scaffold_8:1435751-1441683(-) (11)	POPTR_0008s02830 (8)//POPTR_0008s02820 (7)//POPTR_0001s21010 (6)//POPTR_0008s03130 (6)//POPTR_0001s21070 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207594.1.S1_at	A	A1TS	POPTR_0008s03140	POPTR_0008s03140 (11)	scaffold_8:1646613-1647278(-) (11)	NA	Q84P21	4-coumarate--CoA ligase-like 5	AT1G20510.1	OPC-8:0 CoA ligase1 	LOC_Os03g04000.1	"AMP-binding domain containing protein, expressed"	AC235664_5.1	AMP-dependent synthetase and ligase; Calcium-binding EF-hand AC235664.1 17504-20540 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.207595.1.S1_at	A	A1TS	POPTR_0008s03150	POPTR_0008s03150 (11)	scaffold_8:1649969-1650399(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207596.1.S1_at	A	A1TS	POPTR_0008s03190	POPTR_0008s03190 (11)	scaffold_8:1673290-1674286(+) (11)	NA	P36862	GTP-binding protein yptV3	AT5G03530.1	RAB GTPase homolog C2A 	LOC_Os03g05280.1	"ras-related protein, putative, expressed"	Medtr3g143270.1	"Ras GTPase; Sigma-54 factor, interaction region; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.207597.1.S1_at	A	A1TS	POPTR_0008s03200	POPTR_0008s03200 (11)	scaffold_8:1677667-1678310(+) (11)	NA	Q9SU40	Monocopper oxidase-like protein SKU5	AT5G48450.1	SKU5  similar 3 	LOC_Os08g05820.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.207598.1.S1_at	A	A1TS	POPTR_0008s03210	POPTR_0008s03210 (11)	scaffold_8:1682380-1683238(+) (11)	NA	Q9SU40	Monocopper oxidase-like protein SKU5	AT4G12420.2	Cupredoxin superfamily protein 	LOC_Os08g05820.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.207600.1.S1_at	A	A1TS	POPTR_0008s03230	POPTR_0008s03230 (10)	scaffold_8:1693625-1694881(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207601.1.S1_at	A	A1TS	POPTR_0008s03260	POPTR_0008s03260 (11)	scaffold_8:1723653-1724161(+) (11)	NA	Q93Z04	Probable pectate lyase 13	AT5G04310.1	Pectin lyase-like superfamily protein 	LOC_Os10g31910.1	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207602.1.S1_at	A	A1MS	POPTR_0008s03260	POPTR_0008s03260 (11)	scaffold_8:1725864-1726060(+) (11)	NA	Q93Z04	Probable pectate lyase 13	AT5G04310.1	Pectin lyase-like superfamily protein 	LOC_Os10g31910.1	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207603.1.S1_at	A	A1TS	POPTR_0008s03270	POPTR_0008s03270 (11)	scaffold_8:1728659-1728929(-) (11)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT5G04290.1	kow domain-containing transcription factor 1 	LOC_Os05g43060.1	"retrotransposon, putative, centromere-specific, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207604.1.S1_at	A	A1TS	POPTR_0008s03330	POPTR_0008s03330 (10)	scaffold_8:1769217-1769792(+) (11)	NA	Q94ID2	"Adenylate isopentenyltransferase 5, chloroplastic"	AT5G19040.1	isopentenyltransferase 5 	LOC_Os03g59570.1	"IPP transferase, putative, expressed"	Medtr1g140830.1	Isopentenyl transferase-like 	GO:0044260|cellular macromolecule metabolic process||GO:0008033|tRNA processing||GO:0006508|proteolysis||GO:0019538|protein metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0008234|cysteine-type peptidase activity||GO:0005524|ATP binding	NA
PtpAffx.207606.1.S1_at	A	A1MS	POPTR_0008s03340	POPTR_0008s03340 (11)	scaffold_8:1773000-1773198(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g42520.1	"receptor kinase, putative"	Medtr8g078000.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207607.1.S1_at	A	A1TS	POPTR_0008s03340	POPTR_0008s03340 (11)	scaffold_8:1773809-1774191(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g42520.1	"receptor kinase, putative"	Medtr8g078000.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207608.1.S1_s_at	A	A2TS	POPTR_0008s03340	POPTR_0008s03360 (11)//POPTR_0008s03340 (11)	scaffold_8:1774516-1774632(+) (11)//scaffold_8:1783262-1783378(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g42520.1	"receptor kinase, putative"	Medtr8g078000.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207609.1.S1_at	A	A1TS	POPTR_0008s03370	POPTR_0008s03370 (11)	scaffold_8:1788724-1789696(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g29790.1	"receptor kinase, putative"	Medtr5g047370.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207611.1.S1_s_at	A	A2TS	POPTR_0008s03390	POPTR_0008s03390 (11)//POPTR_0008s03400 (11)	scaffold_8:1797770-1798395(+) (11)//scaffold_8:1806548-1807159(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g29790.1	"receptor kinase, putative"	Medtr5g026130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207613.1.S1_at	A	A1TS	POPTR_0008s03450	POPTR_0008s03450 (11)	scaffold_8:1833100-1834182(+) (11)	NA	Q9SSE8	Probable glycosyltransferase At3g07620	AT1G67410.1	Exostosin family protein 	LOC_Os01g69220.1	"exostosin family domain containing protein, expressed"	Medtr3g103670.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.207614.1.S1_at	A	A1TS	POPTR_0008s03460	POPTR_0008s03460 (11)	scaffold_8:1839340-1841051(+) (11)	NA	NA	NA	AT3G54880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 137 Blast hits to 137 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os07g29640.1	expressed protein	Medtr4g005450.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207615.1.S1_at	A	A1TS	POPTR_0008s03490	POPTR_0008s03490 (11)	scaffold_8:1859085-1860148(+) (11)	NA	NA	NA	AT3G10405.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: chloroplast; Has 44 Blast hits to 44 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os10g39800.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207616.1.S1_at	A	A1TS	POPTR_0008s03500	POPTR_0008s03500 (11)	scaffold_8:1862769-1862907(+) (11)	NA	NA	NA	AT2G39170.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os08g05630.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207616.1.S1_s_at	A	A1TS	POPTR_0008s03500	POPTR_0008s03500 (11)	scaffold_8:1862382-1862753(+) (11)	NA	NA	NA	AT2G39170.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os08g05630.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207617.1.S1_at	A	A1TS	POPTR_0008s03510	POPTR_0008s03510 (10)	scaffold_8:1868111-1868658(-) (10)	NA	Q9CAE3	Lysine-specific histone demethylase 1 homolog 3	AT3G10390.1	Flavin containing amine oxidoreductase family protein 	LOC_Os04g47270.1	"amine oxidase, putative, expressed"	Medtr3g076130.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.207618.1.S1_at	A	A1TS	POPTR_0008s03530	POPTR_0008s03530 (9)	scaffold_8:1886182-1887853(-) (9)	NA	Q9SV36	Armadillo repeat-containing kinesin-like protein 1	AT3G54870.1	Armadillo/beta-catenin repeat family protein / kinesin motor family protein 	LOC_Os06g04560.2	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.207619.1.S1_at	A	A1TS	POPTR_0008s03540	POPTR_0008s03540 (11)	scaffold_8:1892270-1894663(-) (11)	NA	P35159	Ribosomal large subunit pseudouridine synthase B	AT2G39140.1	pseudouridine synthase family protein 	LOC_Os03g05806.1	"pseudouridine synthase family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.207620.1.S1_at	A	A1TS	POPTR_0008s03550	POPTR_0008s03550 (11)	scaffold_8:1902101-1904314(+) (11)	NA	Q94KJ7	Vacuolar protein sorting-associated protein 33 homolog	AT3G54860.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os04g14654.2	"Sec1 family transport protein, putative, expressed"	NA	NA	GO:0006904|vesicle docking during exocytosis	NA	NA
PtpAffx.207621.1.S1_at	A	A1TS	POPTR_0008s03560	POPTR_0008s03560 (11)	scaffold_8:1905319-1905867(-) (11)	NA	Q8VZ40	U-box domain-containing protein 14	AT3G54850.1	plant U-box 14 	LOC_Os06g01304.2	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.207622.1.S1_at	A	A1TS	POPTR_0008s03630	POPTR_0008s03630 (11)	scaffold_8:1969525-1970174(+) (11)	NA	Q9SS47	Pumilio homolog 4	AT3G10360.1	pumilio 4 	LOC_Os02g57390.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr1g120450.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.207623.1.S1_at	A	A1TS	POPTR_0008s03630	POPTR_0008s03630 (11)	scaffold_8:1976248-1977819(+) (11)	NA	Q9SS47	Pumilio homolog 4	AT3G10360.1	pumilio 4 	LOC_Os02g57390.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr1g120450.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.207624.1.S1_at	A	A1TS	POPTR_0008s03640	POPTR_0008s03640 (11)	scaffold_8:1978952-1979446(-) (11)	NA	NA	NA	AT2G39120.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os03g57270.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr4g137920.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207625.1.S1_at	A	A1TS	POPTR_0008s03680	POPTR_0008s03680 (11)	scaffold_8:2000477-2001604(+) (11)	NA	Q9FF46	ABC transporter G family member 28	AT1G53390.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g22350.1	"white-brown complex homolog protein, putative, expressed"	Medtr1g120480.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207626.1.S1_at	A	A1MS	POPTR_0008s03700	POPTR_0008s03700 (11)	scaffold_8:2006888-2007346(-) (11)	NA	Q6EU49	Probable serine/threonine-protein kinase WNK4	AT5G41990.1	with no lysine (K) kinase 8 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr3g109240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207627.1.S1_at	A	A1TS	POPTR_0008s03720	POPTR_0008s03720 (11)	scaffold_8:2012590-2013185(-) (11)	NA	C0LGV0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	AT3G57120.1	Protein kinase superfamily protein 	LOC_Os02g57440.1	"LYK8, putative, expressed"	AC235487_29.1	Protein kinase-like AC235487.1 132912-131578 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207628.1.S1_at	A	A1TS	POPTR_0008s03730	POPTR_0008s03730 (11)	scaffold_8:2017355-2017930(-) (11)	NA	C0LGV0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	AT3G57120.1	Protein kinase superfamily protein 	LOC_Os02g57440.1	"LYK8, putative, expressed"	Medtr1g120540.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207629.1.S1_at	A	A1TS	POPTR_0008s03740	POPTR_0008s03740 (11)	scaffold_8:2022130-2022674(+) (11)	NA	Q9SMB8	Tyramine N-feruloyltransferase 4/11	AT2G39020.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g05710.1	"acetyltransferase, GNAT family, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.207630.1.S1_at	A	A1TS	POPTR_0008s03760	POPTR_0008s03760 (11)	scaffold_8:2027656-2027701(-) (11)	NA	Q58DZ6	Zinc finger protein 143	AT5G04240.1	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein 	LOC_Os03g05690.1	"ZOS3-03 - C2H2 zinc finger protein, expressed"	Medtr1g120550.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; Zinc finger, C2H2-type; ; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.207630.1.S1_s_at	A	A2TS	POPTR_0008s03760	POPTR_0010s23160 (11)//POPTR_0008s03760 (11)	scaffold_10:19814630-19814825(+) (11)//scaffold_8:2027636-2027831(-) (11)	NA	Q58DZ6	Zinc finger protein 143	AT5G04240.1	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein 	LOC_Os03g05690.1	"ZOS3-03 - C2H2 zinc finger protein, expressed"	Medtr1g120550.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; Zinc finger, C2H2-type; ; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.207630.1.S1_x_at	A	A1TS	POPTR_0008s03760	POPTR_0008s03760 (11)	scaffold_8:2027629-2027837(-) (11)	NA	Q58DZ6	Zinc finger protein 143	AT5G04240.1	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein 	LOC_Os03g05690.1	"ZOS3-03 - C2H2 zinc finger protein, expressed"	Medtr1g120550.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; Zinc finger, C2H2-type; ; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.207631.1.S1_at	A	A1TS	POPTR_0008s03760	POPTR_0008s03760 (11)	scaffold_8:2030150-2031789(-) (11)	NA	Q58DZ6	Zinc finger protein 143	AT5G04240.1	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein 	LOC_Os03g05690.1	"ZOS3-03 - C2H2 zinc finger protein, expressed"	Medtr1g120550.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; Zinc finger, C2H2-type; ; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.207633.1.S1_at	A	A1TS	POPTR_0008s03780	POPTR_0008s03780 (11)	scaffold_8:2043071-2043435(+) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT2G37030.1	SAUR-like auxin-responsive protein family  	LOC_Os04g43740.1	"OsSAUR18 - Auxin-responsive SAUR gene family member, expressed"	Medtr1g076620.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207634.1.S1_at	A	A1TS	POPTR_0008s03790	POPTR_0008s03790 (11)	scaffold_8:2043934-2044448(-) (11)	NA	Q6NLE0	F-box protein At5g41720	AT1G64290.1	F-box protein-related 	LOC_Os08g43530.1	OsFBX306 - F-box domain containing protein	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207635.1.S1_at	A	A1TS	POPTR_0008s03820	POPTR_0008s03820 (11)	scaffold_8:2070206-2070651(+) (11)	NA	Q5M7N9	Extended synaptotagmin-3	AT5G04220.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os06g47130.1	"C2 domain containing protein, expressed"	Medtr1g120640.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207637.1.S1_at	A	A1TS	POPTR_0008s03850	POPTR_0008s03850 (11)	scaffold_8:2089592-2090359(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT5G03250.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.2	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g022270.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.207638.1.S1_s_at	A	A1TS	POPTR_0008s03890	POPTR_0008s03890 (11)	scaffold_8:2139350-2139622(+) (11)	NA	Q653H7	Auxin response factor 18	AT4G30080.1	auxin response factor 16 	LOC_Os06g47150.3	"auxin response factor 18, putative, expressed"	Medtr2g110140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.207639.1.S1_at	A	A1TS	POPTR_0008s03930	POPTR_0008s03930 (11)	scaffold_8:2158866-2159386(-) (11)	NA	Q7Z2K6	Endoplasmic reticulum metallopeptidase 1	AT5G20660.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os04g43916.2	expressed protein	Medtr1g120840.1	ArgE/dapE/ACY1/CPG2/yscS; Peptidase M28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.207640.1.S1_at	A	A1TS	POPTR_0008s03960	POPTR_0008s03960 (10)	scaffold_8:2185047-2185557(-) (11)	NA	NA	NA	AT1G13810.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os08g13890.1	"exonuclease, putative, expressed"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207641.1.S1_at	A	A1TS	POPTR_0008s04000	POPTR_0008s04000 (11)	scaffold_8:2204114-2204492(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207642.1.S1_at	A	A1TS	POPTR_0008s04050	POPTR_0008s04050 (11)	scaffold_8:2245089-2247374(+) (11)	NA	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	AT1G16670.1	Protein kinase superfamily protein 	LOC_Os12g41710.1	"Protein kinase domain containing protein, expressed"	Medtr2g077080.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207643.1.S1_at	A	A1TS	POPTR_0008s04110	POPTR_0008s04110 (11)	scaffold_8:2294147-2294693(+) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os01g74440.1	OsMADS79 - MADS-box family gene with M-alpha type-box	Medtr3g109260.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.207644.1.S1_at	A	A1TS	POPTR_0008s04130	POPTR_0008s04130 (11)	scaffold_8:2298352-2299248(-) (11)	NA	Q8S8K6	Serine carboxypeptidase-like 28	AT2G35770.1	serine carboxypeptidase-like 28 	LOC_Os01g61690.1	"OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.207645.1.S1_at	A	A1TS	POPTR_0008s04140	POPTR_0008s04140 (11)	scaffold_8:2302755-2305771(-) (11)	POPTR_0010s22680 (6)	Q9SFB5	Serine carboxypeptidase-like 27	AT3G07990.1	serine carboxypeptidase-like 27 	LOC_Os01g61690.1	"OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.207646.1.S1_at	A	A1TS	POPTR_0008s04180	POPTR_0008s04180 (9)	scaffold_8:2341977-2342871(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207647.1.S1_at	A	A1TS	POPTR_0008s04190	POPTR_0008s04190 (11)	scaffold_8:2353112-2354287(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.207648.1.S1_at	A	A1TS	POPTR_0008s04230	POPTR_0008s04230 (11)	scaffold_8:2372765-2373193(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.207649.1.S1_at	A	A1TS	POPTR_0008s04250	POPTR_0008s04250 (11)	scaffold_8:2380063-2380651(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207650.1.S1_at	A	A1TS	POPTR_0008s04260	POPTR_0008s04260 (11)	scaffold_8:2383330-2386040(+) (11)	NA	Q9FT54	Transcription factor GTE6	AT2G34900.1	Transcription factor GTE6 	LOC_Os06g04640.1	"bromodomain domain containing protein, expressed"	Medtr8g084150.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207651.1.S1_at	A	A1MS	POPTR_0008s04290	POPTR_0008s04290 (11)	scaffold_8:2403114-2403665(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g122120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207652.1.S1_at	A	A1TS	POPTR_0008s04360	POPTR_0008s04360 (10)	scaffold_8:2451200-2451700(-) (10)	NA	Q9ZVX5	Pentatricopeptide repeat-containing protein At2g16880	AT2G16880.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g10420.1	"PPR repeat containing protein, expressed"	Medtr1g121960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207653.1.S1_at	A	A1TS	POPTR_0008s04410	POPTR_0008s04410 (11)	scaffold_8:2472571-2473214(-) (11)	NA	NA	NA	AT2G38890.1	unknown protein; Has 58 Blast hits to 54 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os05g03060.1	expressed protein	Medtr7g120900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207654.1.S1_at	A	A1TS	POPTR_0008s04450	POPTR_0008s04450 (10)	scaffold_8:2510231-2510451(-) (11)	NA	NA	NA	AT3G54970.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207655.1.S1_at	A	A1TS	POPTR_0008s04460	POPTR_0008s04460 (11)	scaffold_8:2513140-2513858(+) (11)	NA	NA	NA	AT5G13620.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os10g41160.1	expressed protein	Medtr7g135640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207656.1.S1_s_at	A	A1TS	POPTR_0008s04480	POPTR_0008s04480 (11)	scaffold_8:2529367-2529764(-) (11)	NA	NA	NA	AT5G13610.1	Protein of unknown function (DUF155) 	LOC_Os07g49410.1	"uncharacterized ACR, YagE family COG1723 containing protein, expressed"	Medtr5g046070.1	Protein of unknown function DUF155 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207657.1.S1_s_at	A	A1TS	POPTR_0008s04490	POPTR_0008s04490 (11)	scaffold_8:2532993-2533413(-) (11)	NA	P47927	Floral homeotic protein APETALA 2	AT2G28550.3	related to AP2.7 	LOC_Os05g03040.1	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.207658.1.S1_at	A	A1TS	POPTR_0008s04500	POPTR_0008s04500 (11)	scaffold_8:2556995-2557451(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207659.1.S1_at	A	A1TS	POPTR_0008s04510	POPTR_0008s04510 (11)	scaffold_8:2557964-2558940(-) (11)	NA	Q9HAU5	Regulator of nonsense transcripts 2	AT2G39260.1	binding;RNA binding 	LOC_Os02g42040.1	"MIF4G domain containing protein, putative, expressed"	Medtr2g055900.1	"Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.207660.1.S1_at	A	A1MS	POPTR_0008s04510	POPTR_0008s04510 (9)	scaffold_8:2564300-2564648(-) (9)	NA	Q9HAU5	Regulator of nonsense transcripts 2	AT2G39260.1	binding;RNA binding 	LOC_Os02g42040.1	"MIF4G domain containing protein, putative, expressed"	Medtr2g055900.1	"Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.207661.1.S1_s_at	A	A1TS	POPTR_0008s04540	POPTR_0008s04540 (11)	scaffold_8:2589244-2591007(-) (11)	NA	Q0JHZ2	Zinc finger CCCH domain-containing protein 11	AT2G20280.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g61830.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr6g089260.1	Leucine-rich repeat 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.207662.1.S1_at	A	A1TS	POPTR_0008s04550	POPTR_0008s04550 (11)	scaffold_8:2597308-2599687(+) (11)	NA	P36151	Uncharacterized protein YKR070W	AT3G45740.1	hydrolase family protein / HAD-superfamily protein 	LOC_Os03g17590.1	"cat eye syndrome critical region protein 5 precursor, putative, expressed"	Medtr2g113800.1	"HAD-superfamily hydrolase, subfamily IIA "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207663.1.S1_at	A	A1TS	POPTR_0008s04570	POPTR_0008s04570 (9)	scaffold_8:2609170-2609282(+) (9)	NA	P09960	Leukotriene A-4 hydrolase	AT5G13520.1	peptidase M1 family protein 	LOC_Os03g60460.1	"aminopeptidase, putative, expressed"	Medtr1g146530.1	"Peptidase M1, membrane alanine aminopeptidase; "	GO:0044283|small molecule biosynthetic process||GO:0019370|leukotriene biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.207663.1.S1_s_at	A	A1TS	POPTR_0008s04570	POPTR_0008s04570 (11)	scaffold_8:2608310-2609159(+) (11)	NA	P09960	Leukotriene A-4 hydrolase	AT5G13520.1	peptidase M1 family protein 	LOC_Os03g60460.1	"aminopeptidase, putative, expressed"	Medtr1g146530.1	"Peptidase M1, membrane alanine aminopeptidase; "	GO:0044283|small molecule biosynthetic process||GO:0019370|leukotriene biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.207664.1.S1_x_at	A	A1TS	POPTR_0008s04610	POPTR_0008s04610 (11)	scaffold_8:2637945-2638915(+) (11)	NA	Q10N34	Two-component response regulator-like PRR73	AT5G02810.1	pseudo-response regulator 7 	LOC_Os03g17570.3	"response regulator receiver domain containing protein, expressed"	Medtr4g079920.1	Response regulator receiver; CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207665.1.S1_at	A	A1TS	POPTR_0008s04670	POPTR_0008s04670 (11)	scaffold_8:2675113-2675764(-) (11)	NA	Q9LHJ9	Probable protein phosphatase 2C 38	AT3G12620.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr1g146560.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207666.1.S1_s_at	A	A1TS	POPTR_0008s04690	POPTR_0008s04690 (11)	scaffold_8:2689288-2690856(-) (11)	NA	NA	NA	AT3G55060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink). 	LOC_Os07g48700.1	expressed protein	Medtr1g146390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207668.1.S1_at	A	A1TS	POPTR_0008s04730	POPTR_0008s04730 (11)	scaffold_8:2721529-2723515(+) (11)	NA	NA	NA	AT5G13590.1	unknown protein; Has 150 Blast hits to 121 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). 	NA	NA	Medtr1g146260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207669.1.S1_at	A	A1TS	POPTR_0008s04740	POPTR_0008s04740 (11)	scaffold_8:2736458-2737594(+) (11)	NA	Q32NW2	Leukocyte receptor cluster member 8 homolog	AT2G39340.1	SAC3/GANP/Nin1/mts3/eIF-3 p25 family 	LOC_Os05g38730.1	"SAC3/GANP family protein, putative, expressed"	Medtr3g098200.1	SAC3/GANP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207670.1.S1_at	A	A1TS	POPTR_0008s04780	POPTR_0008s04780 (10)	scaffold_8:2761493-2763970(-) (11)	POPTR_0008s04770 (7)	Q9M2V7	ABC transporter G family member 16	AT3G55090.1	ABC-2 type transporter family protein 	LOC_Os03g17350.1	"white-brown complex homolog protein, putative, expressed"	Medtr1g146110.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.207671.1.S1_x_at	A	A2TS	POPTR_0008s04790	POPTR_0008s04790 (11)//POPTR_1385s00200 (11)	scaffold_1385:4688-5113(-) (11)//scaffold_8:2771380-2771805(-) (11)	NA	Q5ZJ85	U4/U6 small nuclear ribonucleoprotein Prp3	AT1G28060.1	Pre-mRNA-splicing factor 3 	LOC_Os09g07500.1	expressed protein	Medtr1g146240.1	"small nuclear ribonucleoprotein family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207672.1.S1_at	A	A1TS	POPTR_0008s04790	POPTR_0008s04790 (11)	scaffold_8:2773617-2776180(-) (11)	NA	Q5ZJ85	U4/U6 small nuclear ribonucleoprotein Prp3	AT1G28060.1	Pre-mRNA-splicing factor 3 	LOC_Os09g07500.1	expressed protein	Medtr1g146240.1	"small nuclear ribonucleoprotein family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207673.1.S1_at	A	A1TS	POPTR_0008s04820	POPTR_0008s04820 (11)	scaffold_8:2795511-2796027(+) (11)	NA	NA	NA	AT2G39370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os01g61980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207674.1.S1_at	A	A1TS	POPTR_0008s04860	POPTR_0008s04860 (11)	scaffold_8:2812482-2813041(-) (11)	NA	O54922	Exocyst complex component 7	AT2G39380.1	exocyst subunit exo70 family protein H2 	LOC_Os04g31330.1	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr4g079170.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.207675.1.S1_at	A	A1TS	POPTR_0008s04890	POPTR_0008s04890 (11)	scaffold_8:2832624-2832841(-) (11)	NA	Q15393	Splicing factor 3B subunit 3	AT3G55200.1	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 	LOC_Os02g04480.1	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr8g121570.1	"CPSF A subunit, C-terminal; WD40-like "	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.207675.1.S1_x_at	A	A1TS	POPTR_0008s04890	POPTR_0008s04890 (11)	scaffold_8:2832174-2832836(-) (11)	NA	Q15393	Splicing factor 3B subunit 3	AT3G55200.1	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 	LOC_Os02g04480.1	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr8g121570.1	"CPSF A subunit, C-terminal; WD40-like "	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.207676.1.S1_at	A	A1TS	POPTR_0008s04900	POPTR_0008s04900 (11)	scaffold_8:2839064-2839637(+) (11)	NA	NA	NA	AT2G39430.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g17220.1	"dirigent, putative, expressed"	Medtr7g021120.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207677.1.S1_at	A	A1TS	POPTR_0008s04950	POPTR_0008s04950 (11)	scaffold_8:2883572-2884333(+) (11)	NA	Q9SFU0	Protein transport protein Sec24-like At3g07100	AT3G07100.1	Sec23/Sec24 protein transport family protein 	LOC_Os04g04020.1	"protein transport protein Sec24-like, putative, expressed"	AC235094_10.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region AC235094.1 49157-53293 E EGN_Mt090430 200"	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.207677.1.S1_s_at	A	A2TS	POPTR_0008s04950	POPTR_0010s21800 (11)//POPTR_0008s04950 (11)	scaffold_10:18939220-18939577(-) (11)//scaffold_8:2883619-2883976(+) (11)	NA	Q9SFU0	Protein transport protein Sec24-like At3g07100	AT3G07100.1	Sec23/Sec24 protein transport family protein 	LOC_Os04g04020.1	"protein transport protein Sec24-like, putative, expressed"	AC235094_10.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region AC235094.1 49157-53293 E EGN_Mt090430 200"	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.207678.1.S1_at	A	A1TS	POPTR_0008s04960	POPTR_0008s04960 (11)	scaffold_8:2890558-2891601(+) (11)	NA	NA	NA	AT3G55260.1	beta-hexosaminidase 1 	LOC_Os05g02510.1	"beta-hexosaminidase precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207679.1.S1_at	A	A1TS	POPTR_0008s04970	POPTR_0008s04970 (11)	scaffold_8:2899732-2900343(+) (11)	NA	P28563	Dual specificity protein phosphatase 1	AT3G55270.1	mitogen-activated protein kinase phosphatase 1 	LOC_Os05g02500.1	"dual specificity protein phosphatase, putative, expressed"	Medtr3g102500.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.207680.1.S1_at	A	A1TS	POPTR_0008s04980	POPTR_0008s04980 (11)	scaffold_8:2905406-2906116(+) (11)	NA	NA	NA	AT3G09110.1	Protein of unknown function (DUF674) 	LOC_Os01g06030.1	conserved hypothetical protein	Medtr7g135290.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207681.1.S1_at	A	A1TS	POPTR_0008s04990	POPTR_0008s04990 (11)	scaffold_8:2907241-2907823(+) (11)	NA	NA	NA	AT3G09110.1	Protein of unknown function (DUF674) 	LOC_Os01g06070.1	conserved hypothetical protein	Medtr2g085320.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207682.1.S1_at	A	A1TS	POPTR_0008s05010	POPTR_0008s05010 (11)	scaffold_8:2913445-2915126(-) (11)	NA	P82538	"PsbP-like protein 1, chloroplastic"	AT3G55330.1	PsbP-like protein 1 	LOC_Os10g32400.2	"PsbP, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207683.1.S1_at	A	A1TS	POPTR_0008s05020	POPTR_0008s05020 (11)	scaffold_8:2924063-2924544(+) (11)	NA	Q9M3B9	ABC transporter B family member 20	AT3G55320.1	P-glycoprotein  20 	LOC_Os01g74470.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g133840.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.207683.1.S1_x_at	A	A1TS	POPTR_0008s05020	POPTR_0008s05020 (11)	scaffold_8:2924047-2924617(+) (11)	NA	Q9M3B9	ABC transporter B family member 20	AT3G55320.1	P-glycoprotein  20 	LOC_Os01g74470.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g133840.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.207684.1.S1_at	A	A1TS	POPTR_0008s05030	POPTR_0008s05030 (10)	scaffold_8:2925907-2927085(-) (10)	NA	O80634	"PsbP-like protein 2, chloroplastic"	AT2G39470.1	PsbP-like protein 2 	LOC_Os03g17174.1	"PsbP, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.207685.1.S1_s_at	A	A2TS	POPTR_0015s00930	POPTR_0015s00930 (11)//POPTR_0008s05040 (10)	scaffold_15:546221-546684(+) (11)//scaffold_8:2929475-2929938(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT5G53580.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g37330.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.207686.1.S1_at	A	A1TS	POPTR_0008s05060	POPTR_0008s05060 (11)	scaffold_8:2937688-2938736(-) (11)	NA	Q5S4V7	F-box protein At2g39490	AT2G39490.1	F-box family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207687.1.S1_at	A	A1TS	POPTR_0008s05070	POPTR_0008s05070 (10)	scaffold_8:2944637-2945192(+) (10)	NA	NA	NA	AT3G55340.1	phragmoplastin interacting protein 1 	LOC_Os05g02400.1	"RNA recognition motif containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207688.1.S1_at	A	A1TS	POPTR_0008s05080	POPTR_0008s05080 (11)	scaffold_8:2947333-2947873(+) (11)	NA	NA	NA	AT5G59790.1	Domain of unknown function (DUF966) 	LOC_Os01g62200.2	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g078980.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207689.1.S1_at	A	A1TS	POPTR_0008s05100	POPTR_0008s05100 (11)	scaffold_8:2956071-2956327(+) (11)	NA	NA	NA	AT2G39500.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207690.1.S1_at	A	A1TS	POPTR_0008s05130	POPTR_0008s05130 (11)	scaffold_8:2976962-2977852(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G13670.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g41420.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr7g118460.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.207691.1.S1_at	A	A1TS	POPTR_0008s05140	POPTR_0008s05140 (11)	scaffold_8:2981953-2983023(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT2G39510.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr7g118460.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.207692.1.S1_at	A	A1TS	POPTR_0008s05150	POPTR_0008s05150 (11)	scaffold_8:2988386-2988662(-) (11)	NA	Q54JE4	"2-oxoglutarate dehydrogenase, mitochondrial"	AT3G55410.1	"2-oxoglutarate dehydrogenase, E1 component "	LOC_Os07g49520.1	"2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed"	Medtr7g025160.1	"2-oxoglutarate dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.207692.1.S1_s_at	A	A1TS	POPTR_0008s05150	POPTR_0008s05150 (11)	scaffold_8:2988448-2989282(-) (11)	NA	Q54JE4	"2-oxoglutarate dehydrogenase, mitochondrial"	AT3G55410.1	"2-oxoglutarate dehydrogenase, E1 component "	LOC_Os07g49520.1	"2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed"	Medtr7g025160.1	"2-oxoglutarate dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.207693.1.S1_at	A	A1TS	POPTR_0008s05160	POPTR_0008s05160 (11)	scaffold_8:2996120-2996175(-) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.207694.1.S1_at	A	A1TS	POPTR_0008s05180	POPTR_0008s05180 (11)	scaffold_8:3003990-3004138(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207695.1.S1_at	A	A1TS	POPTR_0008s05220	POPTR_0008s05220 (11)	scaffold_8:3026575-3027068(+) (11)	NA	O80647	Pentatricopeptide repeat-containing protein At2g39620	AT2G39620.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g10800.1	"pentatricopeptide, putative, expressed"	Medtr3g031510.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207696.1.S1_at	A	A1TS	POPTR_0008s05220	POPTR_0008s05220 (11)	scaffold_8:3028239-3028731(+) (11)	NA	O80647	Pentatricopeptide repeat-containing protein At2g39620	AT2G39620.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g10800.1	"pentatricopeptide, putative, expressed"	Medtr3g031510.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207697.1.S1_at	A	A1TS	POPTR_0008s05250	POPTR_0008s05250 (11)	scaffold_8:3041900-3042133(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207699.1.S1_at	A	A1TS	POPTR_0008s05270	POPTR_0008s05270 (11)	scaffold_8:3054994-3056353(+) (11)	NA	B5FXN8	THO complex subunit 4	AT5G02530.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g01020.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g078540.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.207700.1.S1_at	A	A1TS	POPTR_0008s05280	POPTR_0008s05280 (11)	scaffold_8:3057317-3057477(-) (11)	NA	NA	NA	AT3G12590.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g74310.1	expressed protein	Medtr7g025560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207700.1.S1_s_at	A	A1TS	POPTR_0008s05280	POPTR_0008s05280 (11)	scaffold_8:3057482-3058707(-) (11)	NA	NA	NA	AT3G12590.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g74310.1	expressed protein	Medtr7g025560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207701.1.S1_at	A	A1TS	POPTR_0008s05290	POPTR_0008s05290 (11)	scaffold_8:3073375-3073603(-) (11)	NA	NA	NA	AT1G65520.1	"delta(3), delta(2)-enoyl CoA isomerase 1 "	LOC_Os05g45300.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr7g025640.1	Enoyl-CoA hydratase/isomerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207702.1.S1_at	A	A1TS	POPTR_0008s05380	POPTR_0008s05380 (11)	scaffold_8:3113002-3113264(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207703.1.S1_at	A	A1TS	POPTR_0008s05430	POPTR_0008s05430 (11)	scaffold_8:3149988-3150462(+) (11)	NA	Q9LF64	RING-H2 finger protein ATL52	AT5G17600.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g026890.1	"Putative RING-H2 finger protein ATL1H precursor, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207704.1.S1_at	A	A1TS	POPTR_0008s05490	POPTR_0008s05490 (11)	scaffold_8:3177131-3177823(-) (11)	NA	P27322	Heat shock cognate 70 kDa protein 2	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207705.1.S1_at	A	A1TS	POPTR_0008s05500	POPTR_0008s05500 (11)	scaffold_8:3180702-3181265(-) (11)	NA	Q9LHA8	Heat shock cognate 70 kDa protein 4	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207707.1.S1_at	A	A1TS	POPTR_0008s05570	POPTR_0008s05570 (11)	scaffold_8:3234094-3234690(-) (11)	NA	A7Z035	Clathrin interactor 1	AT3G46540.1	ENTH/VHS family protein 	LOC_Os01g62370.1	"ENTH domain containing protein, expressed"	Medtr1g090360.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207709.1.S1_at	A	A1TS	POPTR_0008s05690	POPTR_0008s05690 (11)	scaffold_8:3301018-3303633(+) (11)	NA	Q0JHU5	Elicitor-responsive protein 1	AT3G55470.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g62430.3	"C2 domain containing protein, putative, expressed"	Medtr5g087300.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207709.1.S1_x_at	A	A1TS	POPTR_0008s05690	POPTR_0008s05690 (11)	scaffold_8:3301018-3303629(+) (11)	NA	Q0JHU5	Elicitor-responsive protein 1	AT3G55470.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g62430.3	"C2 domain containing protein, putative, expressed"	Medtr5g087300.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207711.1.S1_at	A	A1TS	POPTR_0008s05740	POPTR_0008s05740 (10)	scaffold_8:3330236-3330809(+) (11)	NA	Q9C7B1	Telomere repeat-binding protein 3	AT3G12560.1	TRF-like 9 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr5g087440.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207713.1.S1_at	A	A1TS	POPTR_0008s05760	POPTR_0008s05760 (11)	scaffold_8:3346113-3346405(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207714.1.S1_at	A	A1TS	POPTR_0008s05790	POPTR_0008s05790 (11)	scaffold_8:3356957-3357918(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207715.1.S1_at	A	A1TS	POPTR_0008s05820	POPTR_0008s05820 (11)	scaffold_8:3396091-3396577(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT2G39710.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g62630.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g087300.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207716.1.S1_at	A	A1TS	POPTR_0008s05830	POPTR_0008s05830 (11)	scaffold_8:3404565-3405571(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT2G39720.1	RING-H2 finger C2A 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207716.1.S1_s_at	A	A1TS	POPTR_0008s05830	POPTR_0008s05830 (11)	scaffold_8:3405384-3405672(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT2G39720.1	RING-H2 finger C2A 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207717.1.S1_at	A	A1TS	POPTR_0008s05860	POPTR_0008s05860 (10)	scaffold_8:3443314-3443779(-) (10)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G55550.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os12g38610.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207718.1.S1_at	A	A1TS	POPTR_0008s05880	POPTR_0008s05880 (10)	scaffold_8:3459727-3460294(-) (10)	NA	Q9M8D3	"Probable phosphoribosylformylglycinamidine synthase, chloroplastic"	AT1G74260.1	purine biosynthesis 4 	LOC_Os01g66500.1	"phosphoribosylformylglycinamidine synthase, putative, expressed"	Medtr3g104150.1	"AIR synthase related protein, C-terminal "	NA	GO:0003824|catalytic activity	NA
PtpAffx.207719.1.S1_at	A	A1TS	POPTR_0008s05880	POPTR_0008s05880 (9)	scaffold_8:3463047-3463457(-) (9)	NA	Q9M8D3	"Probable phosphoribosylformylglycinamidine synthase, chloroplastic"	AT1G74260.1	purine biosynthesis 4 	LOC_Os01g66500.1	"phosphoribosylformylglycinamidine synthase, putative, expressed"	Medtr3g104150.1	"AIR synthase related protein, C-terminal "	NA	GO:0003824|catalytic activity	NA
PtpAffx.207720.1.S1_at	A	A1TS	POPTR_0008s05890	POPTR_0008s05890 (11)	scaffold_8:3470551-3470601(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT3G55560.1	AT-hook protein of GA feedback 2 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	Medtr5g098890.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207720.1.S1_x_at	A	A1TS	POPTR_0008s05890	POPTR_0008s05890 (11)	scaffold_8:3470423-3470675(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT3G55560.1	AT-hook protein of GA feedback 2 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	Medtr5g098890.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207721.1.S1_at	A	A1TS	POPTR_0008s05930	POPTR_0008s05930 (11)	scaffold_8:3493483-3494044(+) (11)	NA	Q9LHS9	Probable transcriptional regulator RABBIT EARS	AT5G06070.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g20930.1	"ZOS5-07 - C2H2 zinc finger protein, expressed"	Medtr4g018860.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.207722.1.S1_at	A	A1TS	POPTR_0008s05960	POPTR_0008s05960 (11)	scaffold_8:3514570-3515328(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207723.1.S1_at	A	A1TS	POPTR_0008s05990	POPTR_0008s05990 (11)	scaffold_8:3521659-3522093(-) (11)	NA	O22285	Probable methyltransferase PMT11	AT2G39750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g62800.1	"methyltransferase, putative, expressed"	Medtr3g092020.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.207723.1.S1_s_at	A	A1TS	POPTR_0008s05990	POPTR_0008s05990 (11)	scaffold_8:3521561-3522152(-) (11)	NA	O22285	Probable methyltransferase PMT11	AT2G39750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g62800.1	"methyltransferase, putative, expressed"	Medtr3g092020.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.207724.1.S1_at	A	A1TS	POPTR_0008s06020	POPTR_0008s06020 (10)	scaffold_8:3542207-3542847(+) (11)	NA	Q9VR91	Probable E3 ubiquitin-protein ligase HERC2	AT3G55580.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os01g62810.2	"regulator of chromosome condensation, putative, expressed"	Medtr3g092040.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207725.1.S1_at	A	A1TS	POPTR_0008s06030	POPTR_0008s06030 (11)	scaffold_8:3554301-3554787(+) (11)	NA	Q9LZM4	Wall-associated receptor kinase-like 20	AT5G02070.1	Protein kinase family protein 	LOC_Os05g25390.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr3g092070.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207727.1.S1_at	A	A1MS	POPTR_0008s06090	POPTR_0008s06090 (11)	scaffold_8:3596336-3596901(+) (11)	NA	P48760	"Folylpolyglutamate synthase, mitochondrial"	AT5G05980.2	DHFS-FPGS homolog B 	LOC_Os03g02030.1	"folylpolyglutamate synthase, mitochondrial precursor, putative, expressed"	Medtr5g088540.1	Folylpolyglutamate synthetase 	NA	NA	GO:0016020|membrane
PtpAffx.207728.1.S1_at	A	A1TS	POPTR_0008s06130	POPTR_0008s06130 (11)	scaffold_8:3626817-3627097(-) (11)	NA	Q9LZM8	BEL1-like homeodomain protein 9	AT5G02030.1	POX (plant homeobox) family protein 	LOC_Os05g38120.1	"homeodomain protein, putative, expressed"	Medtr7g070800.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.207729.1.S1_at	A	A1MS	POPTR_0008s06130	POPTR_0008s06130 (10)	scaffold_8:3629505-3629946(-) (10)	NA	Q9LZM8	BEL1-like homeodomain protein 9	AT5G02030.1	POX (plant homeobox) family protein 	LOC_Os05g38120.1	"homeodomain protein, putative, expressed"	Medtr7g070800.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.20773.1.A1_s_at	A	A2TS	POPTR_0002s15390	POPTR_0002s15390 (11)//POPTR_0014s07410 (9)	scaffold_14:5586870-5587377(+) (9)//scaffold_2:11514511-11515157(-) (11)	NA	Q16MG9	ATPase ASNA1 homolog	AT1G01910.4	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g34970.1	"arsenical pump-driving ATPase, putative, expressed"	Medtr1g120500.1	Anion-transporting ATPase 	GO:0006875|cellular metal ion homeostasis	GO:0005524|ATP binding	NA
PtpAffx.207730.1.S1_at	A	A1TS	POPTR_0008s06140	POPTR_0008s06140 (11)	scaffold_8:3632724-3633207(-) (11)	NA	Q9M331	Probable peptide/nitrate transporter At3g53960	AT3G53960.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.207731.1.S1_at	A	A1TS	POPTR_0008s06150	POPTR_0008s06150 (11)	scaffold_8:3635914-3636233(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207732.1.S1_at	A	A1TS	POPTR_0008s06160	POPTR_0008s06160 (11)	scaffold_8:3638986-3640539(-) (11)	NA	Q40193	Ras-related protein Rab11C	AT1G07410.1	RAB GTPase homolog A2B 	LOC_Os03g60870.1	"ras-related protein, putative, expressed"	Medtr3g092520.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.207733.1.S1_at	A	A1TS	POPTR_0008s06170	POPTR_0008s06170 (11)	scaffold_8:3641599-3641909(-) (11)	NA	P13240	Disease resistance response protein 206	AT2G21110.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g59440.1	"dirigent, putative, expressed"	Medtr3g138740.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207734.1.S1_at	A	A1MS	POPTR_0008s06180	POPTR_0008s06180 (9)	scaffold_8:3646748-3647319(+) (9)	NA	Q39547	Cucumisin	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr6g074160.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207735.1.S1_at	A	A1TS	POPTR_0008s06230	POPTR_0008s06230 (11)	scaffold_8:3668421-3668879(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G05940.1	ROP guanine nucleotide exchange factor 5 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr3g092590.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.207735.1.S1_s_at	A	A1TS	POPTR_0008s06230	POPTR_0008s06230 (11)	scaffold_8:3668518-3668813(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G05940.1	ROP guanine nucleotide exchange factor 5 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr3g092590.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.207736.1.S1_at	A	A1TS	POPTR_0008s06310	POPTR_0008s06310 (11)	scaffold_8:3734051-3734583(-) (11)	NA	P51960	Myb-related protein A	AT3G55730.1	myb domain protein 109 	LOC_Os01g63160.1	"MYB family transcription factor, putative, expressed"	Medtr3g148280.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207737.1.S1_s_at	A	A2TS	POPTR_0008s06320	POPTR_0010s20220 (11)//POPTR_0008s06320 (11)	scaffold_10:17898389-17898529(+) (11)//scaffold_8:3737512-3737652(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT3G55730.1	myb domain protein 109 	LOC_Os01g63160.1	"MYB family transcription factor, putative, expressed"	Medtr4g015830.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207738.1.S1_s_at	A	A1TS	POPTR_0008s06340	POPTR_0008s06340 (11)	scaffold_8:3764543-3764788(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT2G39890.2	proline transporter 1 	LOC_Os07g01090.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g092910.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207739.1.S1_at	A	A1TS	POPTR_0008s06360	POPTR_0008s06360 (11)	scaffold_8:3769529-3771154(+) (11)	NA	P59277	Syntaxin-81	AT1G51740.1	syntaxin of plants 81 	LOC_Os12g05810.1	"syntaxin-18, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207740.1.S1_at	A	A1TS	POPTR_0008s06380	POPTR_0008s06380 (11)	scaffold_8:3787330-3788446(+) (11)	NA	Q6ICL7	Solute carrier family 35 member E4	AT3G11320.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr3g092950.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.207741.1.S1_at	A	A1TS	POPTR_0008s06390	POPTR_0008s06390 (11)	scaffold_8:3793288-3794994(-) (11)	NA	Q8GXP4	Uncharacterized protein At2g39910	AT2G39910.1	ARM repeat superfamily protein 	LOC_Os06g47900.1	expressed protein	Medtr3g092960.1	"Uncharacterized protein At2g39910, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207742.1.S1_s_at	A	A1TS	POPTR_0010s20040	POPTR_0010s20040 (11)	scaffold_10:17800118-17800560(-) (11)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os05g37730.1	"MYB family transcription factor, putative, expressed"	Medtr5g089190.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207743.1.S1_at	A	A1TS	POPTR_0008s06520	POPTR_0008s06520 (11)	scaffold_8:3888680-3889140(+) (11)	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT2G39980.1	HXXXD-type acyl-transferase family protein 	LOC_Os05g37660.1	"transferase family protein, putative, expressed"	Medtr5g089300.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.207744.1.S1_at	A	A1MS	POPTR_0008s06530	POPTR_0008s06530 (9)	scaffold_8:3892631-3893176(+) (9)	NA	NA	NA	AT3G55820.1	Fasciclin-like arabinogalactan family protein 	LOC_Os03g13490.1	expressed protein	Medtr5g089310.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207745.1.S1_at	A	A1TS	POPTR_0008s06560	POPTR_0008s06560 (11)	scaffold_8:3907084-3907415(-) (11)	NA	Q8H1D2	WUSCHEL-related homeobox 5	AT3G11260.1	WUSCHEL related homeobox 5 	LOC_Os01g63510.1	"homeobox domain containing protein, expressed"	Medtr5g089330.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.207746.1.S1_at	A	A1TS	POPTR_0008s06650	POPTR_0008s06650 (11)	scaffold_8:3984413-3985084(+) (11)	NA	P32068	"Anthranilate synthase component I-1, chloroplastic"	AT3G55870.1	ADC synthase superfamily protein 	LOC_Os03g61120.1	"anthranilate synthase component I-1, chloroplast precursor, putative, expressed"	Medtr3g114970.1	Anthranilate synthase component I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207747.1.S1_at	A	A1MS	POPTR_0008s06740	POPTR_0008s06740 (11)	scaffold_8:4037303-4037677(+) (11)	NA	Q42569	Cytochrome P450 90A1	AT5G05690.1	Cytochrome P450 superfamily protein 	LOC_Os12g04480.1	"cytochrome P450, putative, expressed"	Medtr5g089930.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.207748.1.S1_s_at	A	A1TS	POPTR_0008s06750	POPTR_0008s06750 (11)	scaffold_8:4043321-4044687(-) (11)	NA	NA	NA	AT5G05680.1	nuclear pore complex protein-related 	LOC_Os04g51900.1	expressed protein	Medtr3g093470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20775.1.S1_s_at	A	A1TS	POPTR_0008s14490	POPTR_0008s14490 (11)	scaffold_8:9616653-9617760(+) (11)	NA	O04630	"Threonyl-tRNA synthetase, mitochondrial"	AT5G26830.1	Threonyl-tRNA synthetase 	LOC_Os08g19850.1	"threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed"	Medtr5g035990.1	"tRNA synthetase, class II (G, H, P and S); Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.207750.1.S1_at	A	A1TS	POPTR_0008s06750	POPTR_0008s06750 (11)	scaffold_8:4047592-4047875(-) (11)	NA	NA	NA	AT5G05680.1	nuclear pore complex protein-related 	LOC_Os04g51900.1	expressed protein	Medtr3g093470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207751.1.S1_at	A	A1TS	POPTR_0008s06780	POPTR_0008s06780 (11)	scaffold_8:4069790-4070712(+) (11)	NA	O04212	Putative ABC1 protein At2g40090	AT2G40090.1	ABC2 homolog 9 	LOC_Os11g34750.1	"ABC1 family domain containing protein, putative, expressed"	Medtr3g093540.1	ABC-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207752.1.S1_at	A	A1TS	POPTR_0008s06830	POPTR_0008s06830 (11)	scaffold_8:4096113-4097095(+) (11)	NA	Q8GV43	Phosphoinositide phospholipase C 6	AT2G40116.1	Phosphoinositide-specific phospholipase C family protein 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr5g090020.1	C2; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.207752.1.S1_s_at	A	A2TS	POPTR_0008s06830	POPTR_0010s19620 (11)//POPTR_0008s06830 (11)	scaffold_10:17498888-17500278(-) (11)//scaffold_8:4095823-4097161(+) (11)	NA	Q8GV43	Phosphoinositide phospholipase C 6	AT2G40116.1	Phosphoinositide-specific phospholipase C family protein 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr5g090020.1	C2; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.207753.1.S1_at	A	A1TS	POPTR_0008s06840	POPTR_0008s06840 (11)	scaffold_8:4102429-4103510(+) (11)	NA	Q39033	Phosphoinositide phospholipase C 2	AT3G08510.2	phospholipase C 2 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr3g093840.1	C2; EF-Hand type; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.207754.1.S1_at	A	A1TS	POPTR_0008s06850	POPTR_0008s06850 (10)	scaffold_8:4104316-4105389(+) (11)	NA	Q9FFK8	NF-X1-type zinc finger protein NFXL2	AT5G05660.1	sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors 	LOC_Os01g06550.1	"NF-X1-type zinc finger protein, putative, expressed"	Medtr3g093930.1	"Zinc finger, NF-X1-type; Zinc finger, PHD-type; 2Fe-2S ferredoxin, iron-sulfur binding site "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.207755.1.S1_at	A	A1TS	POPTR_0008s06850	POPTR_0008s06850 (11)	scaffold_8:4108491-4108634(+) (11)	NA	Q9FFK8	NF-X1-type zinc finger protein NFXL2	AT5G05660.1	sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors 	LOC_Os01g06550.1	"NF-X1-type zinc finger protein, putative, expressed"	Medtr3g093930.1	"Zinc finger, NF-X1-type; Zinc finger, PHD-type; 2Fe-2S ferredoxin, iron-sulfur binding site "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.207756.1.S1_at	A	A1TS	POPTR_0008s06860	POPTR_0008s06860 (11)	scaffold_8:4113773-4114272(-) (11)	NA	Q9LY50	Putative serine/threonine-protein kinase-like protein CCR3	AT3G55950.1	CRINKLY4 related 3 	LOC_Os05g03620.1	"TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr3g093940.1	Protein kinase; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207757.1.S1_at	A	A1TS	POPTR_0008s06860	POPTR_0008s06860 (11)	scaffold_8:4115088-4116019(-) (11)	NA	Q9LY50	Putative serine/threonine-protein kinase-like protein CCR3	AT3G55950.1	CRINKLY4 related 3 	LOC_Os05g03620.1	"TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr3g093940.1	Protein kinase; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207758.1.S1_at	A	A1TS	POPTR_0008s06900	POPTR_0008s06900 (10)	scaffold_8:4156753-4158022(+) (10)	NA	P0A522	Probable ATP-dependent Clp protease ATP-binding subunit	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207759.1.S1_at	A	A1TS	POPTR_0008s06900	POPTR_0008s06900 (11)	scaffold_8:4159963-4160272(+) (11)	NA	P0A522	Probable ATP-dependent Clp protease ATP-binding subunit	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20776.1.S1_at	A	A1TS	POPTR_0008s08950	POPTR_0008s08950 (11)	scaffold_8:5555100-5555496(-) (11)	NA	Q9SWH5	Galactoside 2-alpha-L-fucosyltransferase	AT2G03220.1	fucosyltransferase 1 	LOC_Os02g52630.1	"xyloglucan fucosyltransferase, putative, expressed"	Medtr1g112160.1	Xyloglucan fucosyltransferase 	GO:0071554|cell wall organization or biogenesis||GO:0042546|cell wall biogenesis	GO:0008107|galactoside 2-alpha-L-fucosyltransferase activity	GO:0016020|membrane
PtpAffx.207760.1.S1_at	A	A1TS	POPTR_0008s06960	POPTR_0008s06960 (11)	scaffold_8:4205090-4205432(-) (11)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.207761.1.S1_at	A	A1TS	POPTR_0008s06970	POPTR_0008s06970 (11)	scaffold_8:4210001-4211871(-) (11)	NA	Q9Y2K9	Syntaxin-binding protein 5-like	AT5G05570.2	transducin family protein / WD-40 repeat family protein 	LOC_Os07g49300.1	expressed protein	Medtr5g090270.1	Synaptobrevin; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207762.1.S1_at	A	A1TS	POPTR_0008s06980	POPTR_0008s06980 (11)	scaffold_8:4223898-4225679(+) (11)	NA	Q9SQ80	Gibberellin 2-beta-dioxygenase 1	AT3G11150.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61440.1	expressed protein	Medtr5g090290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207763.1.S1_at	A	A1TS	POPTR_0008s07040	POPTR_0008s07040 (11)	scaffold_8:4251428-4253154(-) (11)	NA	Q9FFF9	Anaphase-promoting complex subunit 1	AT5G05560.1	"E3 ubiquitin ligase, putative "	NA	NA	Medtr5g090340.1	APC1 ; ubiquitin-protein ligase putative 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207764.1.S1_s_at	A	A1TS	POPTR_0008s07050	POPTR_0008s07050 (11)	scaffold_8:4276373-4276795(+) (11)	NA	Q9XEE8	Probable protein phosphatase 2C 30	AT2G40180.1	phosphatase 2C5 	LOC_Os03g18150.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207765.1.S1_at	A	A1TS	POPTR_0008s07060	POPTR_0008s07060 (11)	scaffold_8:4281104-4281543(-) (11)	NA	NA	NA	AT3G19420.1	PTEN 2 	LOC_Os12g21890.1	"PTEN, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207767.1.S1_at	A	A1TS	POPTR_0008s07070	POPTR_0008s07070 (11)	scaffold_8:4293350-4294347(+) (11)	NA	Q68FD5	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
PtpAffx.207768.1.S1_at	A	A1TS	POPTR_0008s07100	POPTR_0008s07100 (11)	scaffold_8:4306411-4306682(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr5g090370.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207769.1.S1_at	A	A1TS	POPTR_0008s07110	POPTR_0008s07110 (11)	scaffold_8:4310467-4310881(-) (11)	NA	Q9SRM0	RING-H2 finger protein ATL66	AT3G11110.1	RING/U-box superfamily protein 	LOC_Os01g61470.1	"zinc finger, C3HC4 type domain containing protein"	Medtr3g094490.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207770.1.S1_at	A	A1TS	POPTR_0008s07120	POPTR_0008s07120 (11)	scaffold_8:4315413-4315966(-) (11)	NA	A0MES8	Ethylene-responsive transcription factor ABI4	AT2G40220.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g28350.1	"AP2 domain containing protein, expressed"	Medtr5g090430.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.207772.1.S1_s_at	A	A1TS	POPTR_0008s07130	POPTR_0008s07130 (11)	scaffold_8:4328253-4328806(-) (11)	NA	Q8S9G6	Taxadien-5-alpha-ol O-acetyltransferase	AT2G40230.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g28474.1	"transferase family protein, putative, expressed"	Medtr3g094520.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.207773.1.S1_at	A	A1TS	POPTR_0008s07140	POPTR_0008s07140 (11)	scaffold_8:4336768-4337390(+) (11)	NA	NA	NA	AT5G05550.2	sequence-specific DNA binding transcription factors 	LOC_Os02g35690.1	"transcription factor like protein, putative, expressed"	Medtr4g109750.1	"6b-interacting protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207774.1.S1_at	A	A1TS	POPTR_0008s07160	POPTR_0008s07160 (9)	scaffold_8:4349582-4350050(+) (11)	NA	Q9SNC6	U-box domain-containing protein 13	AT3G46510.1	plant U-box 13 	LOC_Os06g01304.2	"spotted leaf 11, putative, expressed"	Medtr5g090510.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.207775.1.S1_at	A	A1TS	POPTR_0008s07170	POPTR_0008s07170 (11)	scaffold_8:4357284-4357820(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G38300.1	myb-like HTH transcriptional regulator family protein 	LOC_Os02g14490.1	"MYB family transcription factor, putative, expressed"	Medtr7g075810.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207776.1.S1_s_at	A	A1TS	POPTR_0008s07180	POPTR_0008s07180 (11)	scaffold_8:4366847-4367751(-) (11)	NA	Q5U3I0	Sorting and assembly machinery component 50 homolog B	AT5G05520.1	Outer membrane OMP85 family protein 	LOC_Os05g39390.1	"outer membrane protein, OMP85 family protein, expressed"	Medtr3g094610.1	Bacterial surface antigen (D15) 	NA	NA	GO:0019867|outer membrane
PtpAffx.207777.1.S1_at	A	A1TS	POPTR_0008s07190	POPTR_0008s07190 (11)	scaffold_8:4373972-4374521(+) (11)	NA	Q54CV5	Probable inactive serine/threonine-protein kinase bub1	AT5G05510.1	Mad3/BUB1 homology region 1 	LOC_Os12g03180.1	"Mad3/BUB1 homology region 1 domain containing protein, expressed"	Medtr3g094620.1	Mad3/BUB1 homology region 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207778.1.S1_at	A	A1TS	POPTR_0008s07230	POPTR_0008s07230 (11)	scaffold_8:4401576-4402498(-) (11)	NA	Q9S7T7	Sister chromatid cohesion 1 protein 1	AT5G05490.2	Rad21/Rec8-like family protein 	LOC_Os05g50410.2	"Rad21 / Rec8 like protein, putative, expressed"	Medtr5g090620.1	"Rad21/Rec8 like protein, C-terminal; Rad21/Rec8 like protein, N-terminal "	NA	NA	GO:0000228|nuclear chromosome
PtpAffx.207780.1.S1_at	A	A1TS	POPTR_0008s07270	POPTR_0008s07270 (9)	scaffold_8:4431215-4431421(-) (9)	NA	Q8H1T3	"Ferritin-2, chloroplastic"	AT3G11050.1	ferritin 2 	LOC_Os12g01530.2	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr5g090670.1	Rubrerythrin; Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
PtpAffx.207781.1.S1_at	A	A1TS	POPTR_0008s07280	POPTR_0008s07280 (11)	scaffold_8:4448973-4449229(+) (11)	NA	Q8LBW3	LOB domain-containing protein 12	AT2G30130.1	Lateral organ boundaries (LOB) domain family protein 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g090730.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207783.1.S1_at	A	A1TS	POPTR_0008s07310	POPTR_0008s07310 (11)	scaffold_8:4467602-4469104(-) (11)	NA	Q9FLB0	DEAD-box ATP-dependent RNA helicase 18	AT5G05450.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g07080.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g094830.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.207784.1.S1_at	A	A1TS	POPTR_0008s07320	POPTR_0008s07320 (11)	scaffold_8:4478634-4479784(+) (11)	NA	NA	NA	AT2G40316.1	FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 27 (InterPro:IPR018939); Has 138 Blast hits to 138 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 62; Plants - 33; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g18540.4	expressed protein	Medtr3g094860.1	"Cytochrome P450; Glycoside hydrolase, family 22 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207785.1.S1_at	A	A1TS	POPTR_0008s07350	POPTR_0008s07350 (11)	scaffold_8:4505145-4505467(-) (11)	NA	O12944	DNA repair and recombination protein RAD54-like (Fragment)	AT5G20420.1	chromatin remodeling 42 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g090790.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.207786.1.S1_at	A	A1TS	POPTR_0008s07360	POPTR_0008s07360 (11)	scaffold_8:4514305-4514708(-) (11)	NA	Q8LFR2	Dehydration-responsive element-binding protein 2C	AT2G40340.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g07120.2	"AP2 domain containing protein, expressed"	Medtr5g090850.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.207787.1.S1_s_at	A	A1TS	POPTR_0008s07390	POPTR_0008s07390 (11)	scaffold_8:4536636-4537130(-) (11)	NA	C0LGP9	Probable leucine-rich repeat receptor-like protein kinase IMK3	AT3G51740.1	inflorescence meristem receptor-like kinase 2 	LOC_Os12g01700.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr5g090940.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207788.1.S1_at	A	A1TS	POPTR_0008s07390	POPTR_0008s07390 (11)	scaffold_8:4537397-4537538(-) (11)	NA	C0LGP9	Probable leucine-rich repeat receptor-like protein kinase IMK3	AT3G51740.1	inflorescence meristem receptor-like kinase 2 	LOC_Os12g01700.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr5g090940.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207788.1.S1_x_at	A	A1TS	POPTR_0008s07390	POPTR_0008s07390 (11)	scaffold_8:4537399-4537560(-) (11)	NA	C0LGP9	Probable leucine-rich repeat receptor-like protein kinase IMK3	AT3G51740.1	inflorescence meristem receptor-like kinase 2 	LOC_Os12g01700.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr5g090940.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207789.1.S1_at	A	A1TS	POPTR_0008s07420	POPTR_0008s07420 (11)	scaffold_8:4548924-4550370(-) (11)	NA	Q5U374	Kelch-like protein 12	AT5G01660.1	"CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). "	LOC_Os01g07140.2	"kelch repeat-containing protein, putative, expressed"	Medtr7g076440.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207790.1.S1_at	A	A1TS	POPTR_0008s07430	POPTR_0008s07430 (11)	scaffold_8:4566654-4568386(+) (11)	NA	NA	NA	AT3G56140.1	Protein of unknown function (DUF399 and DUF3411) 	LOC_Os05g39680.1	"PX domain containing protein, expressed"	Medtr3g097110.1	Protein of unknown function DUF399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207791.1.S1_at	A	A1TS	POPTR_0008s07470	POPTR_0008s07470 (11)	scaffold_8:4582904-4584296(+) (11)	NA	Q39635	Uncharacterized 38.1 kDa protein	AT2G40410.2	Staphylococcal nuclease homologue 	LOC_Os01g07200.1	"staphylococcal nuclease homologue, putative, expressed"	Medtr5g091150.1	Staphylococcus nuclease (SNase-like) 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds""||GO:0003676|nucleic acid binding"	NA
PtpAffx.207792.1.S1_at	A	A1TS	POPTR_0008s07500	POPTR_0008s07500 (11)	scaffold_8:4590635-4591468(+) (11)	NA	Q9LYM3	Protein LURP-one-related 14	AT3G56180.1	Protein of unknown function (DUF567) 	LOC_Os07g12730.1	"DUF567 domain containing protein, putative, expressed"	Medtr7g077600.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207793.1.S1_at	A	A1TS	POPTR_0008s07540	POPTR_0008s07540 (11)	scaffold_8:4615897-4616643(+) (11)	NA	NA	NA	AT3G56200.1	Transmembrane amino acid transporter family protein 	LOC_Os01g61044.2	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g091190.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207794.1.S1_at	A	A1TS	POPTR_0008s07550	POPTR_0008s07550 (11)	scaffold_8:4617771-4617862(-) (11)	NA	NA	NA	AT3G56210.4	ARM repeat superfamily protein 	LOC_Os03g46310.1	expressed protein	Medtr3g097260.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207795.1.S1_at	A	A1TS	POPTR_0008s07580	POPTR_0008s07580 (11)	scaffold_8:4632629-4633400(-) (11)	NA	Q10HL3	Endoribonuclease Dicer homolog 2a	AT3G03300.3	dicer-like 2 	LOC_Os03g38740.1	"Dicer, putative, expressed"	Medtr2g129960.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0004525|ribonuclease III activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.207797.1.S1_at	A	A1TS	POPTR_0008s07600	POPTR_0008s07600 (10)	scaffold_8:4657027-4657067(+) (10)	NA	Q93V61	Phospholipase A(1) LCAT3	AT3G03310.1	lecithin:cholesterol acyltransferase 3 	LOC_Os09g33820.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr7g090070.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207798.1.S1_at	A	A1TS	POPTR_0008s07610	POPTR_0008s07610 (11)	scaffold_8:4672186-4673681(+) (11)	NA	Q8LSN2	AP2-like ethylene-responsive transcription factor BBM2	AT5G17430.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g40070.1	"AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed"	Medtr7g090100.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.207798.1.S1_x_at	A	A1TS	POPTR_0008s07610	POPTR_0008s07610 (11)	scaffold_8:4672186-4673681(+) (11)	NA	Q8LSN2	AP2-like ethylene-responsive transcription factor BBM2	AT5G17430.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g40070.1	"AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed"	Medtr7g090100.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.207799.1.S1_at	A	A1TS	POPTR_0008s07620	POPTR_0008s07620 (11)	scaffold_8:4676011-4677122(+) (11)	NA	Q9LUJ3	Protein RDM1	AT3G22680.1	RNA-DIRECTED DNA METHYLATION 1 	LOC_Os06g42430.3	expressed protein	Medtr5g006750.1	Protein of unknown function DUF1950 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207800.1.S1_at	A	A1TS	POPTR_0008s07630	POPTR_0008s07630 (11)	scaffold_8:4678267-4679042(-) (11)	NA	Q9LMJ3	GDSL esterase/lipase At1g06990	AT1G06990.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g61200.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g082250.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.207801.1.S1_at	A	A1TS	POPTR_0008s07640	POPTR_0008s07640 (11)	scaffold_8:4681672-4683054(-) (11)	NA	O22918	GDSL esterase/lipase At2g30220	AT2G30220.1	GDSL-like Lipase/Acylhydrolase family protein 	LOC_Os01g61200.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g082250.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.207802.1.S1_at	A	A1TS	POPTR_0008s07670	POPTR_0008s07670 (11)	scaffold_8:4698186-4699227(+) (11)	NA	Q8BXJ9	Transmembrane protein 62	AT3G03305.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g66920.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g090110.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.207803.1.S1_at	A	A1TS	POPTR_0008s07700	POPTR_0008s07700 (11)	scaffold_8:4713147-4716229(-) (11)	NA	Q6DCG9	Probable UDP-sugar transporter protein SLC35A5	AT3G59360.2	UDP-galactose transporter 6 	LOC_Os04g41320.1	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr1g146890.1	Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
PtpAffx.207803.1.S1_x_at	A	A1TS	POPTR_0008s07700	POPTR_0008s07700 (11)	scaffold_8:4713147-4716227(-) (11)	POPTR_0010s18780 (6)	Q6DCG9	Probable UDP-sugar transporter protein SLC35A5	AT3G59360.2	UDP-galactose transporter 6 	LOC_Os04g41320.1	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr1g146890.1	Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
PtpAffx.207804.1.S1_at	A	A1TS	POPTR_0008s07720	POPTR_0008s07720 (10)	scaffold_8:4728887-4728975(+) (10)	NA	NA	NA	AT1G05860.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 101 Blast hits to 100 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	NA	NA	Medtr7g099740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207805.1.S1_at	A	A1TS	POPTR_0008s07740	POPTR_0008s07740 (11)	scaffold_8:4749108-4749197(+) (11)	NA	A0JMK9	Chromatin assembly factor 1 subunit A	AT1G65470.1	chromatin assembly factor-1 (FASCIATA1) (FAS1) 	LOC_Os01g67100.1	expressed protein	Medtr7g090120.1	FAS1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207806.1.S1_at	A	A1TS	POPTR_0008s07750	POPTR_0008s07750 (11)	scaffold_8:4760141-4760591(+) (11)	NA	Q42807	"Acyl-[acyl-carrier-protein] desaturase, chloroplastic"	AT3G02630.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os04g31070.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr5g024070.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0045300|acyl-[acyl-carrier-protein] desaturase activity	NA
PtpAffx.207808.1.S1_at	A	A1TS	POPTR_0008s07800	POPTR_0008s07800 (11)	scaffold_8:4802631-4805527(-) (11)	NA	Q5ZK33	"LETM1 and EF-hand domain-containing protein 1, mitochondrial"	AT1G65540.1	LETM1-like protein 	LOC_Os04g41950.1	"calcium-binding mitochondrial protein anon-60Da, putative, expressed"	Medtr7g090240.1	LETM1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207809.1.S1_s_at	A	A1MS	POPTR_0008s07840	POPTR_0008s07840 (9)	scaffold_8:4829007-4830114(-) (9)	NA	O22818	Probable polygalacturonase At2g43860	AT1G65570.1	Pectin lyase-like superfamily protein 	NA	NA	Medtr2g034780.1	"Glycoside hydrolase, family 28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20781.1.S1_at	A	A1TS	POPTR_0013s15260	POPTR_0013s15260 (11)	scaffold_13:15291527-15292025(+) (11)	NA	O22929	Biogenesis of lysosome-related organelles complex 1 subunit 1	AT2G30330.1	GCN5L1 family protein 	LOC_Os12g22760.2	expressed protein	Medtr5g082800.1	GCN5-like 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207810.1.S1_at	A	A1TS	POPTR_0008s07870	POPTR_0008s07870 (10)	scaffold_8:4842075-4842739(-) (11)	NA	Q84W55	"Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3"	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207811.1.S1_at	A	A1TS	POPTR_0008s07900	POPTR_0008s07900 (11)	scaffold_8:4859478-4860281(-) (11)	NA	Q7XUK4	Endoglucanase 12	AT1G65610.1	Six-hairpin glycosidases superfamily protein 	LOC_Os04g41970.1	"endoglucanase, putative, expressed"	Medtr3g106800.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.207812.1.S1_at	A	A1TS	POPTR_0008s07910	POPTR_0008s07910 (11)	scaffold_8:4869910-4870690(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207813.1.S1_at	A	A1TS	POPTR_0008s07920	POPTR_0008s07920 (10)	scaffold_8:4877895-4880439(+) (10)	NA	Q9Z160	Conserved oligomeric Golgi complex subunit 1	AT5G16300.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os01g56910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207814.1.S1_at	A	A1TS	POPTR_0008s07930	POPTR_0008s07930 (11)	scaffold_8:4889036-4889224(-) (11)	NA	O04479	LOB domain-containing protein 6	AT1G65620.4	Lateral organ boundaries (LOB) domain family protein 	LOC_Os01g66590.3	"DUF260 domain containing protein, putative, expressed"	Medtr5g017910.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207815.1.S1_at	A	A1TS	POPTR_0008s07940	POPTR_0008s07940 (11)	scaffold_8:4898265-4900527(+) (11)	NA	Q9FIV6	"Protease Do-like 10, mitochondrial"	AT5G36950.1	DegP protease 10 	LOC_Os05g34460.1	"OsDegp7 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.207816.1.S1_at	A	A1TS	POPTR_0008s07950	POPTR_0008s07950 (11)	scaffold_8:4910356-4910709(+) (11)	NA	Q9MA17	Protein SOMBRERO	AT1G79580.3	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g33940.1	"NAC domain containing protein, putative, expressed"	Medtr2g080610.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.207817.1.S1_at	A	A1TS	POPTR_0008s07970	POPTR_0008s07970 (11)	scaffold_8:4912880-4914453(-) (11)	NA	Q6PEI7	CTP synthase 1	AT3G12670.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr2g080630.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.207818.1.S1_at	A	A1TS	POPTR_0008s07990	POPTR_0008s07990 (11)	scaffold_8:4933303-4934076(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207819.1.S1_at	A	A1TS	POPTR_0008s08010	POPTR_0008s08010 (11)	scaffold_8:4944379-4944943(-) (11)	NA	A2YBX5	Protein kinase G11A	AT1G79250.2	AGC kinase 1.7 	LOC_Os05g14750.1	"AGC_PVPK_like_kin82y.12 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g080720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207820.1.S1_at	A	A2TS	POPTR_0008s08020	POPTR_0008s08020 (11)//POPTR_1829s00200 (11)	scaffold_1829:417-864(-) (11)//scaffold_8:4950564-4951011(-) (11)	NA	Q54XB0	Putative mediator of RNA polymerase II transcription subunit 22	AT1G07950.1	Surfeit locus protein 5 subunit 22 of Mediator complex 	LOC_Os08g37480.2	"mediator of RNA polymerase II transcription subunit 22, putative, expressed"	Medtr2g080730.1	Surfeit locus 5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.207821.1.S1_at	A	A1TS	POPTR_0008s08050	POPTR_0008s08050 (11)	scaffold_8:4988811-4990029(-) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G44680.1	DNA glycosylase superfamily protein 	LOC_Os01g58550.1	"methyladenine glycosylase, putative, expressed"	Medtr2g085500.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.207822.1.S1_at	A	A1TS	POPTR_0008s08060	POPTR_0008s08060 (11)	scaffold_8:5006862-5007262(+) (11)	NA	O64518	Metacaspase-5	AT1G79330.1	metacaspase 5 	LOC_Os01g58580.1	"ICE-like protease p20 domain containing protein, putative, expressed"	Medtr2g085570.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.207822.1.S1_s_at	A	A1TS	POPTR_0008s08060	POPTR_0008s08060 (11)	scaffold_8:5006770-5007160(+) (11)	NA	O64518	Metacaspase-5	AT1G79330.1	metacaspase 5 	LOC_Os01g58580.1	"ICE-like protease p20 domain containing protein, putative, expressed"	Medtr2g085570.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.207823.1.S1_at	A	A1TS	POPTR_0008s08070	POPTR_0008s08070 (11)	scaffold_8:5013580-5013740(-) (11)	NA	A3KN83	Protein strawberry notch homolog 1	AT1G79350.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g52020.1	"PHD-finger domain containing protein, putative, expressed"	Medtr6g093190.1	"EMB1135 ; DNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207823.1.S1_x_at	A	A1TS	POPTR_0008s08070	POPTR_0008s08070 (11)	scaffold_8:5013535-5013771(-) (11)	NA	A3KN83	Protein strawberry notch homolog 1	AT1G79350.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g52020.1	"PHD-finger domain containing protein, putative, expressed"	Medtr6g093190.1	"EMB1135 ; DNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207824.1.S1_at	A	A1MS	POPTR_0008s08070	POPTR_0008s08070 (9)	scaffold_8:5017294-5017825(-) (9)	NA	A3KN83	Protein strawberry notch homolog 1	AT1G79350.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g52020.1	"PHD-finger domain containing protein, putative, expressed"	Medtr6g093190.1	"EMB1135 ; DNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207825.1.S1_at	A	A1TS	POPTR_0008s08070	POPTR_0008s08070 (11)	scaffold_8:5021418-5023136(-) (11)	NA	A3KN83	Protein strawberry notch homolog 1	AT1G79350.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g52020.1	"PHD-finger domain containing protein, putative, expressed"	Medtr6g093190.1	"EMB1135 ; DNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207827.1.S1_at	A	A1TS	POPTR_0008s08100	POPTR_0008s08100 (11)	scaffold_8:5042640-5043088(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT1G54330.1	NAC domain containing protein 20 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr2g085850.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.207828.1.S1_at	A	A1TS	POPTR_0008s08110	POPTR_0008s08110 (11)	scaffold_8:5048838-5049441(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT3G12720.1	myb domain protein 67 	LOC_Os07g31470.1	"MYB family transcription factor, putative, expressed"	Medtr2g085800.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207828.1.S1_x_at	A	A1TS	POPTR_0008s08110	POPTR_0008s08110 (11)	scaffold_8:5048838-5049480(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT3G12720.1	myb domain protein 67 	LOC_Os07g31470.1	"MYB family transcription factor, putative, expressed"	Medtr2g085800.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207829.1.S1_at	A	A1TS	POPTR_0008s08130	POPTR_0008s08130 (11)	scaffold_8:5065033-5065524(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT1G79430.2	Homeodomain-like superfamily protein 	LOC_Os02g07770.1	"Myb transcription factor, putative"	Medtr2g107820.1	"Peptidase M22, glycoprotease; Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207830.1.S1_at	A	A1TS	POPTR_0008s08140	POPTR_0008s08140 (11)	scaffold_8:5072369-5074042(-) (11)	NA	Q9SAK4	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.1	"aldehyde dehydrogenase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207831.1.S1_at	A	A1TS	POPTR_0008s08150	POPTR_0008s08150 (11)	scaffold_8:5077528-5077677(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207833.1.S1_at	A	A2TS	POPTR_0008s08190	POPTR_0008s08190 (11)//POPTR_0008s08220 (10)	scaffold_8:5101563-5102085(+) (11)//scaffold_8:5118011-5118533(+) (10)	NA	Q39548	"Ent-kaur-16-ene synthase, chloroplastic"	AT1G79460.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os04g52230.1	"ent-kaurene synthase, chloroplast precursor, putative, expressed"	Medtr3g074040.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.207834.1.S1_at	A	A1TS	POPTR_0008s08240	POPTR_0008s08240 (11)	scaffold_8:5126945-5127354(-) (11)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT1G79480.2	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os09g38784.1	"retrotransposon protein, putative, unclassified"	Medtr1g147220.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207835.1.S1_at	A	A1TS	POPTR_0008s08260	POPTR_0008s08260 (11)	scaffold_8:5135394-5136419(-) (11)	NA	O81123	Zinc transporter 1	AT3G12750.1	zinc transporter 1 precursor 	LOC_Os05g39560.1	"metal cation transporter, putative, expressed"	Medtr3g107170.2	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.207836.1.S1_at	A	A1MS	POPTR_0008s08270	POPTR_0008s08270 (9)	scaffold_8:5143768-5145584(+) (11)	NA	Q9SA32	Putative cyclin-B3-1	AT1G16330.1	cyclin b3;1 	LOC_Os01g59120.1	"cyclin, putative, expressed"	Medtr7g106110.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.207837.1.S1_at	A	A1TS	POPTR_0008s08270	POPTR_0008s08270 (11)	scaffold_8:5148639-5149870(+) (11)	NA	Q9SA32	Putative cyclin-B3-1	AT1G16330.1	cyclin b3;1 	LOC_Os01g59120.1	"cyclin, putative, expressed"	Medtr7g106110.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.207838.1.S1_at	A	A1TS	POPTR_0008s08290	POPTR_0008s08290 (11)	scaffold_8:5159632-5160718(-) (11)	NA	NA	NA	AT1G79510.2	Uncharacterized conserved protein (DUF2358) 	LOC_Os04g52330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207839.1.S1_at	A	A1TS	POPTR_0008s08350	POPTR_0008s08350 (11)	scaffold_8:5187876-5188531(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207840.1.S1_at	A	A1TS	POPTR_0008s08370	POPTR_0008s08370 (11)	scaffold_8:5192518-5193922(+) (11)	NA	NA	NA	AT1G16290.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). "	LOC_Os02g07480.1	"transglycosylase SLT domain containing protein, expressed"	Medtr2g077950.1	"Contains a PF|01464 Transglycosylase SLT domain., putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207843.1.S1_at	A	A1TS	POPTR_0008s08420	POPTR_0008s08420 (11)	scaffold_8:5216587-5217964(+) (11)	NA	Q9SAJ3	"ATP-dependent zinc metalloprotease FTSH 12, chloroplastic"	AT1G79560.1	FTSH protease 12 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr8g065640.1	Peptidase M41; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207844.1.S1_at	A	A1TS	POPTR_0008s08430	POPTR_0008s08430 (11)	scaffold_8:5220286-5223112(+) (11)	NA	Q9SA27	DEAD-box ATP-dependent RNA helicase 36	AT1G16280.1	RNA helicase 36 	LOC_Os07g43980.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g077530.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.207845.1.S1_at	A	A1TS	POPTR_0008s08460	POPTR_0008s08460 (10)	scaffold_8:5242908-5244107(-) (10)	NA	Q03640	Tricalbin-3	AT3G19830.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g58230.1	"C2 domain containing protein, putative, expressed"	Medtr8g112680.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207846.1.S1_at	A	A1TS	POPTR_0008s08470	POPTR_0008s08470 (11)	scaffold_8:5255081-5255630(+) (11)	NA	Q8CGF7	Transcription elongation regulator 1	AT3G19840.1	pre-mRNA-processing protein 40C 	LOC_Os10g34380.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g101290.3	FF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207847.1.S1_at	A	A1TS	POPTR_0008s08480	POPTR_0008s08480 (11)	scaffold_8:5257770-5257933(-) (11)	NA	NA	NA	AT3G19870.1	unknown protein; Has 84 Blast hits to 64 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). 	LOC_Os02g58250.1	expressed protein	Medtr4g101310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207848.1.S1_at	A	A1TS	POPTR_0008s08490	POPTR_0008s08490 (11)	scaffold_8:5269851-5270521(+) (11)	NA	Q92804	TATA-binding protein-associated factor 2N	AT1G50300.1	TBP-associated factor 15 	LOC_Os09g12800.1	"zinc finger Ran-binding domain-containing protein 2, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.207849.1.S1_at	A	A1TS	POPTR_0008s08500	POPTR_0008s08500 (11)	scaffold_8:5273407-5273571(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT3G19850.1	Phototropic-responsive NPH3 family protein 	LOC_Os04g57800.1	"BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr1g120700.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.207849.1.S1_s_at	A	A1TS	POPTR_0008s08500	POPTR_0008s08500 (11)	scaffold_8:5272990-5273282(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT3G19850.1	Phototropic-responsive NPH3 family protein 	LOC_Os04g57800.1	"BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr1g120700.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.20785.1.S1_at	A	A1TS	POPTR_0017s02110	POPTR_0017s02110 (10)	scaffold_17:1527982-1528420(-) (10)	NA	O04567	Probable inactive receptor kinase At1g27190	AT1G27190.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g41030.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr6g010010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207850.1.S1_at	A	A1TS	POPTR_0008s08510	POPTR_0008s08510 (11)	scaffold_8:5275585-5276017(+) (11)	NA	NA	NA	AT3G19850.1	Phototropic-responsive NPH3 family protein 	LOC_Os04g57800.1	"BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g009390.1	BTB/POZ; NPH3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207851.1.S1_at	A	A1TS	POPTR_0008s08530	POPTR_0008s08530 (11)	scaffold_8:5282699-5285844(-) (11)	NA	Q6DBN5	U-box domain-containing protein 62	AT3G19895.1	RING/U-box superfamily protein 	LOC_Os02g58280.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207853.1.S1_at	A	A1TS	POPTR_0008s08550	POPTR_0008s08550 (11)	scaffold_8:5306614-5307066(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207854.1.S1_at	A	A1TS	POPTR_0008s08560	POPTR_0008s08560 (11)	scaffold_8:5310239-5310644(-) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G69600.1	zinc finger homeodomain  1 	LOC_Os09g24820.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr7g009640.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207855.1.S1_at	A	A1MS	POPTR_0008s08620	POPTR_0008s08620 (11)	scaffold_8:5344196-5344708(+) (11)	NA	Q8LK93	Pentatricopeptide repeat-containing protein At2g02980	AT2G02980.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g58100.1	"pentatricopeptide, putative, expressed"	Medtr5g044270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207856.1.S1_at	A	A1TS	POPTR_0008s08660	POPTR_0008s08660 (11)	scaffold_8:5364588-5365702(+) (11)	NA	Q8L7F9	"Beta-1,3-galactosyltransferase 15"	AT1G26810.1	galactosyltransferase1 	LOC_Os06g12390.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g044460.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.207857.1.S1_at	A	A1TS	POPTR_0008s08670	POPTR_0008s08670 (11)	scaffold_8:5366560-5367040(-) (11)	NA	NA	NA	AT1G09157.1	Protein of unknown function (DUF679) 	LOC_Os01g29240.1	expressed protein	Medtr5g047290.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207858.1.S1_at	A	A1TS	POPTR_0008s08710	POPTR_0008s08710 (10)	scaffold_8:5372556-5373109(-) (11)	NA	Q9S746	Protein HOTHEAD	AT1G14185.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os03g02700.1	"HOTHEAD precursor, putative, expressed"	Medtr5g044590.1	GMC oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.207859.1.S1_at	A	A1TS	POPTR_0008s08720	POPTR_0008s08720 (11)	scaffold_8:5379124-5379777(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT1G69580.2	Homeodomain-like superfamily protein 	LOC_Os03g20900.1	"Myb transcription factor, putative, expressed"	Medtr4g111390.1	"Peptidase M22, glycoprotease; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20786.1.A1_at	A	A1TS	POPTR_0002s02530	POPTR_0002s02530 (9)	scaffold_2:1431686-1432535(+) (9)	NA	O81769	Probable diphthine synthase	AT4G31790.2	Tetrapyrrole (Corrin/Porphyrin) Methylases 	LOC_Os03g23970.2	"diphthine synthase, putative, expressed"	Medtr3g156180.1	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.207860.1.S1_at	A	A1TS	POPTR_0008s08750	POPTR_0008s08750 (10)	scaffold_8:5407573-5408046(+) (11)	NA	Q9MBG5	Probable calcium-binding protein CML30	AT3G29000.1	Calcium-binding EF-hand family protein 	LOC_Os11g38780.1	"EF hand family protein, putative"	Medtr5g025740.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207861.1.S1_at	A	A1TS	POPTR_0008s08760	POPTR_0008s08760 (11)	scaffold_8:5411969-5412017(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G69560.1	myb domain protein 105 	LOC_Os08g33800.1	"MYB family transcription factor, putative"	Medtr4g111830.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207861.1.S1_x_at	A	A1TS	POPTR_0008s08760	POPTR_0008s08760 (11)	scaffold_8:5411629-5412017(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G69560.1	myb domain protein 105 	LOC_Os08g33800.1	"MYB family transcription factor, putative"	Medtr4g111830.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207862.1.S1_at	A	A1TS	POPTR_0008s08780	POPTR_0008s08780 (11)	scaffold_8:5434225-5435789(+) (11)	NA	Q84NC5	MADS-box transcription factor 25	AT2G03060.2	AGAMOUS-like 30 	LOC_Os11g43740.1	"OsMADS68 - MADS-box family gene with MIKC* type-box, expressed"	Medtr5g044830.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.207863.1.S1_at	A	A1TS	POPTR_0008s08800	POPTR_0008s08800 (11)	scaffold_8:5462625-5463344(-) (11)	NA	Q562C4	Methyltransferase-like protein 7B	AT1G69523.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51030.1	"methyltransferase domain containing protein, putative, expressed"	Medtr5g044980.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.207864.1.S1_at	A	A1TS	POPTR_0008s08810	POPTR_0008s08810 (11)	scaffold_8:5469329-5469404(+) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.207864.1.S1_s_at	A	A1TS	POPTR_0008s08810	POPTR_0008s08810 (11)	scaffold_8:5468580-5469335(+) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.207865.1.S1_at	A	A1TS	POPTR_0008s08820	POPTR_0008s08820 (11)	scaffold_8:5478990-5479615(+) (11)	NA	B9HI87	UPF0497 membrane protein 6	AT1G14160.1	Uncharacterised protein family (UPF0497) 	LOC_Os06g12500.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207866.1.S1_at	A	A1TS	POPTR_0008s08840	POPTR_0008s08840 (11)	scaffold_8:5484929-5485768(-) (11)	NA	Q50EK3	Cytochrome P450 704C1	AT1G69500.1	"cytochrome P450, family 704, subfamily B, polypeptide 1 "	LOC_Os03g07250.1	"cytochrome P450, putative, expressed"	Medtr8g138890.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.207867.1.S1_at	A	A1TS	POPTR_0008s08860	POPTR_0008s08860 (11)	scaffold_8:5497612-5498885(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g40830.1	"cullin family domain containing protein, putative, expressed"	Medtr4g111940.1	Cullin; N-6 Adenine-specific DNA methylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207868.1.S1_at	A	A1TS	POPTR_0008s08880	POPTR_0008s08880 (11)	scaffold_8:5511685-5512515(+) (11)	NA	NA	NA	AT2G03150.1	ATP/GTP-binding protein family 	NA	NA	Medtr5g045140.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207869.1.S1_at	A	A1TS	POPTR_0008s08900	POPTR_0008s08900 (11)	scaffold_8:5514145-5514716(-) (11)	NA	Q9CWR2	SET and MYND domain-containing protein 3	AT1G26760.1	SET domain protein 35 	LOC_Os03g07260.1	tetratricopeptide repeat domain containing protein	Medtr4g111970.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207871.1.S1_at	A	A1TS	POPTR_0008s08980	POPTR_0008s08980 (9)	scaffold_8:5570303-5572432(+) (11)	NA	Q6R8G0	Phosphate transporter PHO1 homolog 10	AT1G69480.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.207872.1.S1_at	A	A1TS	POPTR_0008s08990	POPTR_0008s08990 (11)	scaffold_8:5573535-5574429(-) (11)	NA	Q6R8G7	Phosphate transporter PHO1 homolog 3	AT1G14040.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.207874.1.S1_at	A	A1TS	POPTR_0008s09080	POPTR_0008s09080 (11)	scaffold_8:5631328-5631909(+) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os12g39330.1	"AP2 domain containing protein, expressed"	Medtr6g013450.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.207875.1.S1_at	A	A1TS	POPTR_0008s09100	POPTR_0008s09100 (11)	scaffold_8:5640699-5641233(-) (11)	NA	NA	NA	AT1G26650.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69430.1); Has 205 Blast hits to 204 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g40470.1	expressed protein	Medtr4g115820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207876.1.S1_at	A	A1TS	POPTR_0008s09110	POPTR_0008s09110 (11)	scaffold_8:5645250-5645401(+) (11)	NA	NA	NA	AT3G11810.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03330.1); Has 141 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g15520.2	expressed protein	Medtr4g116020.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207876.1.S1_s_at	A	A1TS	POPTR_0008s09110	POPTR_0008s09110 (11)	scaffold_8:5645407-5645687(+) (11)	NA	NA	NA	AT3G11810.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03330.1); Has 141 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g15520.2	expressed protein	Medtr4g116020.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207877.1.S1_at	A	A1TS	POPTR_0008s09130	POPTR_0008s09130 (11)	scaffold_8:5663226-5664191(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207878.1.S1_at	A	A1TS	POPTR_0008s09140	POPTR_0008s09140 (11)	scaffold_8:5665282-5666637(-) (11)	NA	Q9ZQ70	Probable WRKY transcription factor 3	AT2G03340.1	WRKY DNA-binding protein 3 	LOC_Os12g32250.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr5g045880.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.207879.1.S1_at	A	A1MS	POPTR_0008s09210	POPTR_0008s09210 (10)	scaffold_8:5694526-5696663(-) (10)	NA	P42738	"Chorismate mutase, chloroplastic"	AT1G69370.1	chorismate mutase 3 	LOC_Os01g55870.1	"chorismate mutase, chloroplast precursor, putative, expressed"	Medtr1g016760.1	Chorismate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207880.1.S1_at	A	A1TS	POPTR_0008s09230	POPTR_0008s09230 (11)	scaffold_8:5725401-5725604(+) (11)	NA	NA	NA	AT1G13940.1	Plant protein of unknown function (DUF863) 	LOC_Os12g38870.2	expressed protein	Medtr5g046300.1	"Protein of unknown function DUF863, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207880.1.S1_x_at	A	A1TS	POPTR_0008s09230	POPTR_0008s09230 (11)	scaffold_8:5725244-5725604(+) (11)	NA	NA	NA	AT1G13940.1	Plant protein of unknown function (DUF863) 	LOC_Os12g38870.2	expressed protein	Medtr5g046300.1	"Protein of unknown function DUF863, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207882.1.S1_at	A	A1TS	POPTR_0008s09260	POPTR_0008s09260 (11)	scaffold_8:5732820-5733407(-) (11)	NA	Q9C507	"Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial"	AT1G69350.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g38980.1	"pentatricopeptide, putative, expressed"	Medtr5g046330.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207884.1.S1_at	A	A1TS	POPTR_0008s09270	POPTR_0008s09270 (11)	scaffold_8:5739400-5741164(-) (11)	NA	A7T167	Protein GDAP2 homolog	AT1G69340.1	appr-1-p processing enzyme family protein 	LOC_Os10g30750.1	"appr-1-p processing enzyme family protein, putative, expressed"	Medtr5g046410.1	"Cellular retinaldehyde-binding/triple function, C-terminal; Appr-1-p processing "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207885.1.S1_at	A	A1MS	POPTR_0008s09320	POPTR_0008s09320 (11)	scaffold_8:5767912-5768366(+) (11)	NA	Q9LMG7	Probable inactive purple acid phosphatase 2	AT1G13900.1	Purple acid phosphatases superfamily protein 	LOC_Os07g02090.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr4g115740.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207886.1.S1_at	A	A1TS	POPTR_0008s09330	POPTR_0008s09330 (11)	scaffold_8:5770853-5770897(-) (11)	NA	Q9LMG8	Putative SNAP25 homologous protein SNAP30	AT1G13890.1	soluble N-ethylmaleimide-sensitive factor adaptor protein 30 	LOC_Os02g32740.1	"SNARE domain containing protein, putative, expressed"	Medtr5g046670.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207887.1.S1_at	A	A1MS	POPTR_0008s09350	POPTR_0008s09350 (10)	scaffold_8:5776536-5777362(+) (10)	NA	P27598	"Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic"	AT3G29320.1	"Glycosyl transferase, family 35 "	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr6g014750.1	"Glycosyl transferase, family 35 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207888.1.S1_at	A	A1TS	POPTR_0008s09380	POPTR_0008s09380 (11)	scaffold_8:5811092-5812335(+) (11)	NA	Q9FZE0	Beta-glucosidase 40	AT1G26560.1	beta glucosidase 40 	LOC_Os03g11420.1	"Os3bglu6 - beta-glucosidase/beta-fucosidase/beta-galactosidase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.207889.1.S1_at	A	A1TS	POPTR_0008s09410	POPTR_0008s09410 (11)	scaffold_8:5829061-5829607(+) (11)	NA	NA	NA	AT1G26610.1	C2H2-like zinc finger protein 	LOC_Os10g40660.1	"ZOS10-07 - C2H2 zinc finger protein, expressed"	Medtr5g046750.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.207892.1.S1_at	A	A1TS	POPTR_0008s09450	POPTR_0008s09450 (9)	scaffold_8:5855748-5855780(+) (9)	NA	Q9C5W6	14-3-3-like protein GF14 iota	AT1G26480.1	general regulatory factor 12 	LOC_Os02g36974.4	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.207893.1.S1_at	A	A1TS	POPTR_0008s09470	POPTR_0008s09470 (11)	scaffold_8:5863172-5865568(+) (11)	NA	P21727	"Triose phosphate/phosphate translocator, chloroplastic"	AT5G46110.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os01g13770.1	"DUF250 domain containing protein, putative, expressed"	Medtr5g047000.1	Tpt phosphate/phosphoenolpyruvate translocator 	NA	NA	GO:0016020|membrane
PtpAffx.207894.1.S1_at	A	A1TS	POPTR_0008s09510	POPTR_0008s09510 (11)	scaffold_8:5888848-5889128(+) (11)	NA	Q9ZQ89	Ureide permease 2	AT2G03530.2	ureide permease 2 	LOC_Os12g31850.4	"ureide permease, putative, expressed"	Medtr5g047390.1	Fatty acid elongase 3-ketoacyl-CoA synthase 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207894.1.S1_s_at	A	A1TS	POPTR_0008s09510	POPTR_0008s09510 (11)	scaffold_8:5885863-5889655(+) (11)	NA	Q9ZQ89	Ureide permease 2	AT2G03530.2	ureide permease 2 	LOC_Os12g31850.4	"ureide permease, putative, expressed"	Medtr5g047390.1	Fatty acid elongase 3-ketoacyl-CoA synthase 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207895.1.S1_at	A	A1TS	POPTR_0008s09530	POPTR_0008s09530 (11)	scaffold_8:5900797-5901329(+) (11)	NA	P0C7R4	Pentatricopeptide repeat-containing protein At1g69290	AT1G69290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g57900.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g048260.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207896.1.S1_at	A	A1TS	POPTR_0008s09540	POPTR_0008s09540 (11)	scaffold_8:5902814-5903405(+) (11)	NA	NA	NA	AT1G10380.1	Putative membrane lipoprotein 	LOC_Os06g25950.1	expressed protein	Medtr5g038340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207897.1.S1_at	A	A1TS	POPTR_0008s09550	POPTR_0008s09550 (11)	scaffold_8:5910292-5910943(+) (11)	NA	Q9LMX4	Probable inactive purple acid phosphatase 1	AT1G13750.1	Purple acid phosphatases superfamily protein 	LOC_Os12g38760.2	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g073720.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.207898.1.S1_at	A	A1TS	POPTR_0008s09560	POPTR_0008s09560 (11)	scaffold_8:5913404-5914169(+) (11)	NA	NA	NA	AT5G61040.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g38730.1	expressed protein	Medtr3g036680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207899.1.S1_at	A	A1TS	POPTR_0008s09570	POPTR_0008s09570 (11)	scaffold_8:5914543-5914910(-) (11)	NA	Q9ZPR4	Magnesium transporter MRS2-5	AT2G03620.2	magnesium transporter 3 	LOC_Os06g44150.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr5g048220.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207900.1.S1_at	A	A1TS	POPTR_0008s09580	POPTR_0008s09580 (11)	scaffold_8:5923172-5923997(+) (11)	NA	NA	NA	AT2G03630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os07g20270.1	expressed protein	Medtr5g048120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207901.1.S1_at	A	A1MS	POPTR_0008s09620	POPTR_0008s09620 (10)	scaffold_8:5935173-5936282(-) (10)	NA	Q9LMX5	Ninja-family protein AFP2	AT1G13740.1	ABI five binding protein 2 	LOC_Os07g41160.2	"protein of unknown function DUF1675 domain containing protein, expressed"	Medtr5g048030.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207902.1.S1_at	A	A1TS	POPTR_0008s09640	POPTR_0008s09640 (11)	scaffold_8:5959000-5959611(+) (11)	NA	Q14562	ATP-dependent RNA helicase DHX8	AT1G26370.1	RNA helicase family protein 	LOC_Os06g09280.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.207903.1.S1_at	A	A1TS	POPTR_0008s09650	POPTR_0008s09650 (11)	scaffold_8:5962963-5964735(+) (11)	NA	Q9FVW3	Probable esterase At1g33990	AT1G26360.1	methyl esterase 13 	LOC_Os07g41230.1	"esterase, putative, expressed"	Medtr3g012890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207904.1.S1_at	A	A1TS	POPTR_0008s09690	POPTR_0008s09690 (11)	scaffold_8:5989370-5990549(-) (11)	NA	Q42896	Fructokinase-2	AT1G69200.1	fructokinase-like 2 	LOC_Os03g40550.1	"kinase, pfkB family, putative, expressed"	Medtr5g047610.1	PfkB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207905.1.S1_at	A	A1TS	POPTR_0008s09700	POPTR_0008s09700 (11)	scaffold_8:5994562-5995136(+) (11)	NA	P29251	Folic acid synthesis protein fol1	AT4G30000.1	Dihydropterin pyrophosphokinase / Dihydropteroate synthase 	LOC_Os07g42632.2	"folic acid synthesis protein, putative, expressed"	Medtr5g047600.1	"Dihydropteroate synthase, DHPS; 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK "	GO:0044281|small molecule metabolic process||GO:0009396|folic acid and derivative biosynthetic process	GO:0003848|2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity||GO:0004156|dihydropteroate synthase activity	NA
PtpAffx.207906.1.S1_at	A	A1TS	POPTR_0008s09730	POPTR_0008s09730 (11)	scaffold_8:6005465-6007107(-) (11)	NA	NA	NA	AT1G26330.2	DNA binding 	LOC_Os09g01360.1	expressed protein	Medtr8g077640.1	"FY-rich, C-terminal; WD40-like "	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.207907.1.S1_at	A	A1TS	POPTR_0008s09740	POPTR_0008s09740 (11)	scaffold_8:6021026-6022687(+) (11)	NA	Q76EJ0	Protein DROOPING LEAF	AT1G69180.1	Plant-specific transcription factor YABBY family protein 	LOC_Os03g11600.2	"YABBY domain containing protein, putative, expressed"	Medtr5g048750.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207908.1.S1_at	A	A1TS	POPTR_0008s09790	POPTR_0008s09790 (11)	scaffold_8:6063998-6070380(+) (11)	NA	Q39685	MADS-box protein CMB1	AT5G15800.1	K-box region and MADS-box transcription factor family protein  	LOC_Os09g32948.1	"OsMADS8 - MADS-box family gene with MIKCc type-box, expressed"	Medtr7g014840.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.207909.1.S1_at	A	A1TS	POPTR_0008s09810	POPTR_0008s09810 (10)	scaffold_8:6084048-6085039(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.207910.1.S1_at	A	A1TS	POPTR_0008s09810	POPTR_0008s09810 (11)	scaffold_8:6087498-6088164(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.207911.1.S1_at	A	A1TS	POPTR_0008s09820	POPTR_0008s09820 (11)	scaffold_8:6093049-6093607(+) (11)	NA	Q9SQU6	"Pentatricopeptide repeat-containing protein At3g06430, chloroplastic"	AT3G06430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g19650.3	"PPR2, putative, expressed"	Medtr8g134160.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207913.1.S1_at	A	A1TS	POPTR_0008s09840	POPTR_0008s09840 (11)	scaffold_8:6114530-6115467(+) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.207915.1.S1_at	A	A1TS	POPTR_0008s09860	POPTR_0008s09860 (11)	scaffold_8:6124999-6126096(-) (11)	NA	Q7PC84	ABC transporter G family member 39	AT1G66950.1	pleiotropic drug resistance 11 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207916.1.S1_s_at	A	A1TS	POPTR_0008s09870	POPTR_0008s09870 (11)	scaffold_8:6128737-6128933(-) (11)	NA	A9PEK8	S-adenosylmethionine synthase 3	AT3G17390.1	S-adenosylmethionine synthetase family protein 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.207917.1.S1_at	A	A1TS	POPTR_0008s09890	POPTR_0008s09890 (11)	scaffold_8:6138220-6138552(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g133650.1	zinc finger family protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207918.1.S1_at	A	A1TS	POPTR_0008s09910	POPTR_0008s09910 (11)	scaffold_8:6142960-6144647(-) (11)	NA	NA	NA	AT1G48170.1	unknown protein; Has 78 Blast hits to 78 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g08230.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207919.1.S1_s_at	A	A1TS	POPTR_0008s09960	POPTR_0008s09960 (11)	scaffold_8:6168293-6168851(+) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT1G48110.2	evolutionarily conserved C-terminal region 7 	LOC_Os03g20180.2	"ECT protein, putative, expressed"	Medtr8g134440.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207920.1.S1_at	A	A1TS	POPTR_0008s09970	POPTR_0008s09970 (11)	scaffold_8:6179233-6179989(+) (11)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207921.1.S1_at	A	A1TS	POPTR_0008s10000	POPTR_0008s10000 (11)	scaffold_8:6238435-6239256(+) (11)	NA	Q54LB8	Putative vacuolar protein sorting-associated protein 13A	AT1G48090.1	calcium-dependent lipid-binding family protein 	LOC_Os02g27110.1	expressed protein	Medtr5g013950.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207922.1.S1_at	A	A1TS	POPTR_0008s10010	POPTR_0008s10010 (11)	scaffold_8:6243238-6243643(+) (11)	NA	Q9LNF4	Probable protein phosphatase 2C 13	AT1G48040.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037290.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207923.1.S1_at	A	A1TS	POPTR_0008s10040	POPTR_0008s10040 (11)	scaffold_8:6254246-6255025(-) (11)	NA	Q9R062	Glycogenin-1	AT2G47180.1	galactinol synthase 1 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.207924.1.S1_at	A	A1TS	POPTR_0008s10060	POPTR_0008s10060 (11)	scaffold_8:6268741-6269555(-) (11)	NA	Q8CCP0	Serologically defined colon cancer antigen 1 homolog	AT5G49930.1	zinc knuckle (CCHC-type) family protein 	LOC_Os12g37720.1	"zinc knuckle family protein, expressed"	Medtr2g037320.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.207925.1.S1_at	A	A1TS	POPTR_0008s10060	POPTR_0008s10060 (9)	scaffold_8:6273464-6274206(-) (11)	NA	Q8CCP0	Serologically defined colon cancer antigen 1 homolog	AT5G49930.1	zinc knuckle (CCHC-type) family protein 	LOC_Os12g37720.1	"zinc knuckle family protein, expressed"	Medtr2g037320.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.207926.1.S1_at	A	A1TS	POPTR_0008s10070	POPTR_0008s10070 (11)	scaffold_8:6277923-6279596(-) (11)	NA	Q8RWB8	E3 ubiquitin-protein ligase UPL6	AT3G17205.3	ubiquitin protein ligase 6 	LOC_Os05g06690.2	"HECT-domain domain containing protein, expressed"	Medtr2g037340.1	IQ calmodulin-binding region; HECT 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.207927.1.S1_at	A	A1TS	POPTR_0008s10120	POPTR_0008s10120 (11)	scaffold_8:6353414-6353822(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207928.1.S1_at	A	A1TS	POPTR_0008s10140	POPTR_0008s10140 (10)	scaffold_8:6366406-6367909(+) (10)	NA	NA	NA	AT5G49580.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g61730.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g037620.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.207930.1.S1_at	A	A1TS	POPTR_0008s10160	POPTR_0008s10160 (11)	scaffold_8:6376022-6376597(+) (11)	NA	P22242	Desiccation-related protein PCC13-62	AT1G47980.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os04g33150.1	"desiccation-related protein PCC13-62 precursor, putative, expressed"	Medtr2g037730.1	"Desiccation-related protein PCC13-62 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207931.1.S1_at	A	A1TS	POPTR_0008s10170	POPTR_0008s10170 (10)	scaffold_8:6379055-6379529(-) (10)	NA	Q9M302	Pentatricopeptide repeat-containing protein At3g48810	AT3G48810.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g04160.1	"pentatricopeptide containing protein, putative"	Medtr1g039940.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207933.1.S1_at	A	A1TS	POPTR_0008s10210	POPTR_0008s10210 (11)	scaffold_8:6395998-6397221(+) (11)	NA	Q54J73	Poly(A) polymerase	AT3G06560.1	poly(A) polymerase 3 	LOC_Os07g48890.1	expressed protein	Medtr3g128240.1	"DNA polymerase, beta-like region; Poly(A) polymerase, RNA-binding region; Poly(A) polymerase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.207934.1.S1_at	A	A1TS	POPTR_0008s10250	POPTR_0008s10250 (10)	scaffold_8:6422939-6423084(+) (11)	NA	P07728	Glutelin type-A 1	AT2G28680.1	RmlC-like cupins superfamily protein 	LOC_Os01g74480.1	"cupin domain containing protein, expressed"	Medtr4g098190.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.207934.1.S1_s_at	A	A1TS	POPTR_0008s10250	POPTR_0008s10250 (11)	scaffold_8:6422355-6422949(+) (11)	NA	P07728	Glutelin type-A 1	AT2G28680.1	RmlC-like cupins superfamily protein 	LOC_Os01g74480.1	"cupin domain containing protein, expressed"	Medtr4g098190.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.207935.1.S1_at	A	A1TS	POPTR_0008s10280	POPTR_0008s10280 (11)	scaffold_8:6435700-6436034(-) (11)	POPTR_0010s15750 (8)	O22900	Probable WRKY transcription factor 23	AT2G47260.1	WRKY DNA-binding protein 23 	LOC_Os03g55080.1	"OsWRKY3 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g106500.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.207935.1.S1_x_at	A	A1TS	POPTR_0008s10280	POPTR_0008s10280 (11)	scaffold_8:6435700-6436034(-) (11)	POPTR_0010s15750 (8)	O22900	Probable WRKY transcription factor 23	AT2G47260.1	WRKY DNA-binding protein 23 	LOC_Os03g55080.1	"OsWRKY3 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g106500.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.207936.1.S1_at	A	A1TS	POPTR_0008s10320	POPTR_0008s10320 (11)	scaffold_8:6473485-6474706(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207938.1.S1_at	A	A1MS	POPTR_0008s10380	POPTR_0008s10380 (11)	scaffold_8:6498457-6498498(-) (11)	NA	NA	NA	AT4G16180.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g19690.1	expressed protein	Medtr8g137290.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207938.1.S1_x_at	A	A1MS	POPTR_0008s10380	POPTR_0008s10380 (11)	scaffold_8:6498343-6498498(-) (11)	NA	NA	NA	AT4G16180.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g19690.1	expressed protein	Medtr8g137290.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207939.1.S1_at	A	A1TS	POPTR_0008s10400	POPTR_0008s10400 (9)	scaffold_8:6514618-6515142(-) (11)	NA	Q9ZVX1	Probable ubiquitin-conjugating enzyme E2 23	AT2G16920.1	ubiquitin-conjugating enzyme 23 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr7g047340.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.207940.1.S1_at	A	A1TS	POPTR_0008s10420	POPTR_0008s10420 (11)	scaffold_8:6524744-6525444(-) (11)	NA	O23470	GDSL esterase/lipase At4g16230	AT2G23540.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g19670.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g137420.1	hypothetical protein 	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.207941.1.S1_at	A	A1TS	POPTR_0008s10440	POPTR_0008s10440 (11)	scaffold_8:6533119-6533872(+) (11)	NA	Q9LSP1	Probable pectinesterase 67	AT3G17060.1	Pectin lyase-like superfamily protein 	LOC_Os03g19610.1	"pectinesterase, putative, expressed"	Medtr2g038030.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.207943.1.S1_at	A	A1TS	POPTR_0008s10460	POPTR_0008s10460 (11)	scaffold_8:6544340-6545690(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G49470.3	PAS domain-containing protein tyrosine kinase family protein 	LOC_Os12g37570.1	"protein kinase family protein, putative, expressed"	Medtr8g137470.1	PAS; Tyrosine protein kinase 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207944.1.S1_at	A	A1TS	POPTR_0008s10490	POPTR_0008s10490 (11)	scaffold_8:6578536-6579422(-) (11)	NA	NA	NA	NA	NA	LOC_Os05g06510.1	"4Fe-4S binding domain containing protein, expressed"	Medtr2g038230.1	"4Fe-4S ferredoxin, iron-sulfur binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207946.1.S1_at	A	A1MS	POPTR_0008s10540	POPTR_0008s10540 (9)	scaffold_8:6605950-6606078(+) (9)	NA	NA	NA	AT3G17030.1	Nucleic acid-binding proteins superfamily 	LOC_Os03g61700.1	expressed protein	Medtr8g137660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207947.1.S1_at	A	A1TS	POPTR_0008s10540	POPTR_0008s10540 (9)	scaffold_8:6607777-6607934(+) (9)	NA	NA	NA	AT3G17030.1	Nucleic acid-binding proteins superfamily 	LOC_Os03g61700.1	expressed protein	Medtr8g137660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207948.1.S1_at	A	A1TS	POPTR_0008s10550	POPTR_0008s10550 (11)	scaffold_8:6609057-6610132(-) (11)	NA	Q0WSF1	Aldehyde dehydrogenase 22A1	AT3G66658.2	aldehyde dehydrogenase 22A1 	LOC_Os07g48920.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g038270.1	Aldehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.207949.1.S1_at	A	A1TS	POPTR_0008s10560	POPTR_0008s10560 (11)	scaffold_8:6616019-6616539(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207950.1.S1_at	A	A1TS	POPTR_0008s10600	POPTR_0008s10600 (11)	scaffold_8:6640541-6641011(+) (11)	NA	O82380	"Pentatricopeptide repeat-containing protein At2g29760, chloroplastic"	AT2G29760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g02280.1	"pentatricopeptide, putative, expressed"	Medtr5g020540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207951.1.S1_at	A	A1TS	POPTR_0008s10610	POPTR_0008s10610 (11)	scaffold_8:6645383-6645457(+) (11)	NA	Q9SWB6	Seed maturation protein PM36	AT3G16990.1	"Haem oxygenase-like, multi-helical "	LOC_Os03g19390.1	"TENA/THI-4 family protein, putative, expressed"	Medtr8g137720.1	TENA/THI-4 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207951.1.S1_s_at	A	A1TS	POPTR_0008s10610	POPTR_0008s10610 (11)	scaffold_8:6643927-6645331(+) (11)	NA	Q9SWB6	Seed maturation protein PM36	AT3G16990.1	"Haem oxygenase-like, multi-helical "	LOC_Os03g19390.1	"TENA/THI-4 family protein, putative, expressed"	Medtr8g137720.1	TENA/THI-4 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207952.1.S1_at	A	A1TS	POPTR_0008s10630	POPTR_0008s10630 (11)	scaffold_8:6663598-6663780(+) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g106820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207952.1.S1_s_at	A	A2TS	POPTR_0008s10630	POPTR_0008s10630 (11)//POPTR_0010s15260 (11)	scaffold_10:14590450-14590642(-) (11)//scaffold_8:6663639-6663831(+) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g106820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207952.1.S1_x_at	A	A1TS	POPTR_0008s10630	POPTR_0008s10630 (11)	scaffold_8:6663598-6663823(+) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g106820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207953.1.S1_at	A	A1TS	POPTR_0008s10630	POPTR_0008s10630 (11)	scaffold_10:14588891-14588941(-) (11)//scaffold_8:6665387-6665437(+) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g106820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207953.1.S1_s_at	A	A2TS	POPTR_0008s10630	POPTR_0008s10630 (11)//POPTR_0010s15260 (11)	scaffold_10:14588901-14589794(-) (11)//scaffold_8:6664494-6665390(+) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g106820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207953.1.S1_x_at	A	A1TS	POPTR_0008s10630	POPTR_0008s10630 (11)	scaffold_8:6664458-6665469(+) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g106820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207954.1.S1_at	A	A1MS	POPTR_0008s10650	POPTR_0008s10650 (11)	scaffold_8:6681106-6681456(-) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29290.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr8g137800.1	"Zinc finger CCHC domain-containing protein 10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207954.1.S1_s_at	A	A1MS	POPTR_0008s10650	POPTR_0008s10650 (11)	scaffold_8:6680949-6681312(-) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29290.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr8g137800.1	"Zinc finger CCHC domain-containing protein 10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207955.1.S1_at	A	A1TS	POPTR_0008s10790	POPTR_0008s10790 (11)	scaffold_8:6785562-6786430(+) (11)	NA	NA	NA	AT5G49340.1	TRICHOME BIREFRINGENCE-LIKE 4 	LOC_Os02g53380.1	expressed protein	Medtr8g138150.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207956.1.S1_at	A	A1TS	POPTR_0008s10800	POPTR_0008s10800 (11)	scaffold_8:6787917-6788462(-) (11)	NA	NA	NA	AT5G26910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1); Has 1322 Blast hits to 684 proteins in 162 species: Archae - 4; Bacteria - 497; Metazoa - 157; Fungi - 101; Plants - 155; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink). 	LOC_Os03g19080.2	expressed protein	Medtr2g038920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207957.1.S1_at	A	A1TS	POPTR_0008s10810	POPTR_0008s10810 (11)	scaffold_8:6800708-6801364(+) (11)	NA	Q9SY66	Protein FAR1-RELATED SEQUENCE 11	AT1G10240.1	FAR1-related sequence 11 	LOC_Os04g36590.1	"transposon protein, putative, unclassified, expressed"	Medtr2g038970.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.207958.1.S1_at	A	A1TS	POPTR_0008s10830	POPTR_0008s10830 (11)	scaffold_8:6804833-6805430(+) (11)	NA	NA	NA	AT5G49320.1	Protein of unknown function (DUF1218) 	LOC_Os01g14960.1	expressed protein	Medtr2g038990.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207959.1.S1_at	A	A1TS	POPTR_0008s10850	POPTR_0008s10850 (10)	scaffold_8:6810494-6812536(-) (10)	NA	NA	NA	AT1G69060.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g54150.2	expressed protein	Medtr5g049250.1	"F4N2.3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207960.1.S1_at	A	A1TS	POPTR_0008s10870	POPTR_0008s10870 (11)	scaffold_8:6831189-6832839(-) (11)	NA	Q91YE6	Importin-9	AT1G26170.1	ARM repeat superfamily protein 	LOC_Os06g16280.1	expressed protein	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.207961.1.S1_at	A	A1TS	POPTR_0008s10890	POPTR_0008s10890 (11)	scaffold_8:6850243-6850697(-) (11)	NA	NA	NA	AT1G13480.1	Protein of unknown function (DUF1262) 	LOC_Os08g31880.1	conserved hypothetical protein	Medtr5g036800.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207961.1.S1_x_at	A	A1TS	POPTR_0008s10890	POPTR_0008s10890 (11)	scaffold_8:6850243-6850697(-) (11)	NA	NA	NA	AT1G13480.1	Protein of unknown function (DUF1262) 	LOC_Os08g31880.1	conserved hypothetical protein	Medtr5g036800.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207962.1.S1_at	A	A1TS	POPTR_0008s10910	POPTR_0008s10910 (11)	scaffold_8:6865724-6866779(+) (11)	NA	NA	NA	AT1G26180.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os02g22060.1	expressed protein	Medtr6g022930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207963.1.S1_at	A	A1TS	POPTR_0008s10920	POPTR_0008s10920 (11)	scaffold_8:6867916-6868764(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207964.1.S1_at	A	A1TS	POPTR_0008s10940	POPTR_0008s10940 (11)	scaffold_8:6886250-6886896(-) (11)	NA	P68175	Strictosidine synthase	AT3G57030.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os12g04424.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.207965.1.S1_at	A	A1TS	POPTR_0008s10980	POPTR_0008s10980 (11)	scaffold_8:6911675-6912005(-) (11)	NA	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570	AT1G13570.1	F-box/RNI-like superfamily protein 	NA	NA	AC233842_5.1	Cyclin-like F-box; FBD AC233842.2 14326-16643 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207966.1.S1_at	A	A1TS	POPTR_0008s10990	POPTR_0008s10990 (11)	scaffold_8:6915323-6916491(-) (11)	NA	Q54R62	Uridine-cytidine kinase C	AT1G26190.1	Phosphoribulokinase / Uridine kinase family 	LOC_Os02g47860.2	"uridine kinase, putative, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0006171|cAMP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004016|adenylate cyclase activity||GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.207967.1.S1_at	A	A1TA	POPTR_0008s11040	POPTR_0008s11040 (9)	scaffold_8:6960389-6960885(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207967.1.S1_x_at	A	A1TA	POPTR_0008s11040	POPTR_0008s11040 (9)	scaffold_8:6960480-6960885(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207968.1.S1_at	A	A1TS	POPTR_0008s11070	POPTR_0008s11070 (11)	scaffold_8:6986721-6987313(-) (11)	NA	NA	NA	AT1G26140.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68700.1); Has 35 Blast hits to 35 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207969.1.S1_at	A	A1TS	POPTR_0008s11100	POPTR_0008s11100 (11)	scaffold_8:7018097-7018137(+) (11)	NA	NA	NA	AT2G03810.4	18S pre-ribosomal assembly protein gar2-related 	LOC_Os04g39240.1	expressed protein	Medtr5g049800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207969.1.S1_s_at	A	A1TS	POPTR_0008s11100	POPTR_0008s11100 (11)	scaffold_8:7017512-7017787(+) (11)	NA	NA	NA	AT2G03810.4	18S pre-ribosomal assembly protein gar2-related 	LOC_Os04g39240.1	expressed protein	Medtr5g049800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207970.1.S1_at	A	A1TS	POPTR_0008s11130	POPTR_0008s11130 (11)	scaffold_8:7030343-7031666(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207972.1.S1_s_at	A	A1TS	POPTR_0008s11150	POPTR_0008s11150 (11)	scaffold_8:7055317-7055500(-) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G13635.2	DNA glycosylase superfamily protein 	LOC_Os08g38170.1	"methyladenine glycosylase, putative, expressed"	Medtr8g077310.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.207973.1.S1_at	A	A1TS	POPTR_0008s11160	POPTR_0008s11160 (11)	scaffold_8:7060118-7060743(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207974.1.S1_at	A	A1TS	POPTR_0008s11170	POPTR_0008s11170 (11)	scaffold_8:7063140-7063345(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207975.1.S1_at	A	A1TS	POPTR_0008s11180	POPTR_0008s11180 (10)	scaffold_8:7066056-7067091(+) (11)	NA	Q5ZJ01	Abhydrolase domain-containing protein FAM108B1	AT3G30380.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g42730.1	"OsPOP14 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207976.1.S1_at	A	A1TS	POPTR_0008s11200	POPTR_0008s11200 (11)	scaffold_8:7084069-7086543(+) (11)	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT1G68990.1	male gametophyte defective 3 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.207977.1.S1_at	A	A1TS	POPTR_0008s11210	POPTR_0008s11210 (11)	scaffold_8:7095628-7096170(+) (11)	NA	Q9CAA7	Putative U-box domain-containing protein 42	AT1G68940.1	Armadillo/beta-catenin-like repeat family protein 	LOC_Os06g16410.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.207978.1.S1_at	A	A1TS	POPTR_0008s11220	POPTR_0008s11220 (11)	scaffold_8:7100194-7100731(+) (11)	NA	A0JPD7	UPF0765 protein C10orf58 homolog	NA	NA	NA	NA	Medtr8g077060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207979.1.S1_at	A	A1MS	POPTR_0008s11230	POPTR_0008s11230 (11)	scaffold_8:7102899-7103352(-) (11)	NA	Q9CAA8	Putative pentatricopeptide repeat-containing protein At1g68930	AT1G68930.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os02g01610.2	"pentatricopeptide, putative, expressed"	Medtr8g077070.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207980.1.S1_at	A	A1MS	POPTR_0008s11250	POPTR_0008s11250 (9)	scaffold_8:7117065-7117515(+) (10)	NA	Q6L8G1	Fe(2+) transport protein 2	AT2G04032.1	zinc transporter 7 precursor 	LOC_Os03g46470.1	"metal cation transporter, putative, expressed"	Medtr4g157380.1	Zinc/iron permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207981.1.S1_at	A	A1TS	POPTR_0008s11290	POPTR_0008s11290 (11)	scaffold_8:7140936-7141658(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207981.1.S1_x_at	A	A1TS	POPTR_0008s11290	POPTR_0008s11290 (11)	scaffold_8:7140937-7141658(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207982.1.S1_at	A	A1TS	POPTR_0008s11300	POPTR_0008s11300 (10)	scaffold_8:7154313-7154631(+) (10)	NA	Q6NQI8	LAG1 longevity assurance homolog 3	AT1G13580.3	LAG1 longevity assurance homolog 3 	LOC_Os02g37080.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.207982.1.S1_s_at	A	A2TS	POPTR_0008s11300	POPTR_0008s11300 (11)//POPTR_0010s14480 (9)	scaffold_10:14074745-14074897(-) (9)//scaffold_8:7154618-7154785(+) (11)	NA	Q6NQI8	LAG1 longevity assurance homolog 3	AT1G13580.3	LAG1 longevity assurance homolog 3 	LOC_Os02g37080.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.207983.1.S1_at	A	A1TS	POPTR_0008s11330	POPTR_0008s11330 (11)	scaffold_8:7166273-7166429(-) (11)	NA	Q8GVE8	Phosphoenolpyruvate carboxylase 4	AT1G68750.1	phosphoenolpyruvate carboxylase 4 	LOC_Os01g02050.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr1g118320.1	Phosphoenolpyruvate carboxylase; AAA ATPase; 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.207984.1.S1_at	A	A1TS	POPTR_0008s11330	POPTR_0008s11330 (11)	scaffold_8:7175287-7177373(-) (11)	NA	Q8GVE8	Phosphoenolpyruvate carboxylase 4	AT1G68750.1	phosphoenolpyruvate carboxylase 4 	LOC_Os01g02050.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr1g118320.1	Phosphoenolpyruvate carboxylase; AAA ATPase; 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.207985.1.S1_at	A	A1TS	POPTR_0008s11350	POPTR_0008s11350 (11)	scaffold_8:7190106-7190244(+) (11)	NA	Q9CA40	Nudix hydrolase 1	AT1G68760.1	nudix hydrolase  1 	NA	NA	Medtr5g071730.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.207986.1.S1_s_at	A	A2TS	POPTR_0008s11360	POPTR_0010s14150 (11)//POPTR_0008s11360 (11)	scaffold_10:13836789-13837218(-) (11)//scaffold_8:7197107-7197536(+) (11)	NA	NA	NA	AT3G25640.1	"Protein of unknown function, DUF617 "	LOC_Os05g50160.1	"DUF617 domain containing protein, expressed"	Medtr8g115750.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207987.1.S1_at	A	A1TS	POPTR_0008s11370	POPTR_0008s11370 (11)	scaffold_8:7210748-7211310(-) (11)	NA	Q5PP26	Piriformospora indica-insensitive protein 2	AT1G68780.1	RNI-like superfamily protein 	LOC_Os01g02060.1	"TOO MANY MOUTHS precursor, putative, expressed"	Medtr1g118360.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.207988.1.S1_s_at	A	A1TS	POPTR_0008s11380	POPTR_0008s11380 (11)	scaffold_8:7218943-7219558(-) (11)	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT1G13220.2	nuclear matrix constituent protein-related 	LOC_Os02g48010.1	"nuclear matrix constituent protein 1-like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207989.1.S1_s_at	A	A1TS	POPTR_0008s11390	POPTR_0008s11390 (11)	scaffold_8:7239468-7241007(+) (11)	NA	Q8ND56	Protein LSM14 homolog A	AT1G26110.1	decapping 5 	LOC_Os01g02090.1	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207990.1.S1_at	A	A1TS	POPTR_0008s11420	POPTR_0008s11420 (11)	scaffold_8:7253499-7254953(+) (11)	NA	P10897	Cytochrome b561	AT1G26100.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os08g29520.1	"cytochrome b561, putative, expressed"	Medtr5g069530.2	Cytochrome b561 / ferric reductase transmembrane 	NA	NA	GO:0016021|integral to membrane
PtpAffx.207991.1.S1_at	A	A1TS	POPTR_0008s11470	POPTR_0008s11470 (10)	scaffold_8:7281963-7282489(-) (11)	NA	A0AQW4	Transcription factor TCP12	AT1G68800.1	TCP domain protein 12 	LOC_Os03g49880.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207993.1.S1_at	A	A1TS	POPTR_0008s11490	POPTR_0008s11490 (11)	scaffold_8:7307825-7309214(+) (11)	NA	Q9S7Y1	Transcription factor bHLH30	AT1G68810.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr1g118050.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.207994.1.S1_at	A	A1TS	POPTR_0008s11530	POPTR_0008s11530 (11)	scaffold_8:7327327-7329368(+) (11)	NA	NA	NA	AT1G68820.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207994.1.S1_s_at	A	A1TS	POPTR_0008s11530	POPTR_0008s11530 (11)	scaffold_8:7327000-7327191(+) (11)	NA	NA	NA	AT1G68820.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207996.1.S1_at	A	A1TS	POPTR_0008s11570	POPTR_0008s11570 (11)	scaffold_8:7366392-7366973(-) (11)	NA	Q0V7R1	Probable galacturonosyltransferase-like 3	AT1G13250.1	galacturonosyltransferase-like 3 	LOC_Os04g44850.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr3g123120.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.207997.1.S1_at	A	A1TS	POPTR_0008s11580	POPTR_0008s11580 (11)	scaffold_8:7376065-7376400(+) (11)	NA	C0LGL4	Probable LRR receptor-like serine/threonine-protein kinase At2g28960	AT1G25570.1	Di-glucose binding protein with Leucine-rich repeat domain 	LOC_Os01g04720.1	"leucine-rich repeat protein-related, putative, expressed"	Medtr5g069200.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207999.1.S1_at	A	A1TS	POPTR_0008s11620	POPTR_0008s11620 (11)	scaffold_8:7413480-7414125(+) (11)	NA	P49641	Alpha-mannosidase 2x	AT5G14950.1	golgi alpha-mannosidase II 	LOC_Os06g13650.2	"alpha-mannosidase 2, putative, expressed"	Medtr6g009490.1	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	NA	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds""||GO:0008270|zinc ion binding"	NA
PtpAffx.208000.1.S1_at	A	A1TS	POPTR_0008s11630	POPTR_0008s11630 (11)	scaffold_8:7420298-7421486(+) (11)	NA	Q940D0	Two-component response regulator ARR1	AT1G25550.1	myb-like transcription factor family protein 	LOC_Os02g22020.1	"MYB family transcription factor, putative, expressed"	Medtr5g068770.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208001.1.S1_at	A	A1TS	POPTR_0008s11650	POPTR_0008s11650 (9)	scaffold_8:7438300-7440369(+) (11)	NA	Q6GP15	Mediator of RNA polymerase II transcription subunit 25	AT1G25540.1	phytochrome and flowering time regulatory protein (PFT1) 	LOC_Os09g13610.1	"PFT1, putative, expressed"	Medtr5g068600.1	"PFT1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208001.1.S1_x_at	A	A1TS	POPTR_0008s11650	POPTR_0008s11650 (9)	scaffold_8:7438300-7440369(+) (11)	NA	Q6GP15	Mediator of RNA polymerase II transcription subunit 25	AT1G25540.1	phytochrome and flowering time regulatory protein (PFT1) 	LOC_Os09g13610.1	"PFT1, putative, expressed"	Medtr5g068600.1	"PFT1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208002.1.S1_x_at	A	A1TS	POPTR_0008s11650	POPTR_0008s11650 (9)	scaffold_8:7442487-7446473(+) (11)	NA	Q6GP15	Mediator of RNA polymerase II transcription subunit 25	AT1G25540.1	phytochrome and flowering time regulatory protein (PFT1) 	LOC_Os09g13610.1	"PFT1, putative, expressed"	Medtr5g068600.1	"PFT1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208003.1.S1_at	A	A1TA	POPTR_0008s11650	POPTR_0008s11650 (11)	scaffold_8:7446656-7447233(-) (11)	POPTR_0010s13870 (6)	Q6GP15	Mediator of RNA polymerase II transcription subunit 25	AT1G25540.1	phytochrome and flowering time regulatory protein (PFT1) 	LOC_Os09g13610.1	"PFT1, putative, expressed"	Medtr5g068600.1	"PFT1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208005.1.S1_at	A	A1TS	POPTR_0008s11700	POPTR_0008s11700 (11)	scaffold_8:7480028-7482485(+) (11)	NA	Q869R1	CTL-like protein DDB_G0274487	AT1G25500.2	Plasma-membrane choline transporter family protein 	LOC_Os02g36960.1	"choline transporter-related, putative, expressed"	Medtr5g068500.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208006.1.S1_at	A	A1TS	POPTR_0008s11710	POPTR_0008s11710 (11)	scaffold_8:7492060-7492840(+) (11)	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT1G68640.1	bZIP transcription factor family protein 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.208007.1.S1_at	A	A1TS	POPTR_0008s11720	POPTR_0008s11720 (11)	scaffold_8:7500099-7500583(+) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G68620.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g15270.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.208008.1.S1_at	A	A1TS	POPTR_0008s11740	POPTR_0008s11740 (11)	scaffold_8:7515380-7516683(-) (11)	NA	Q9C6L8	Aluminum-activated malate transporter 4	AT1G25480.1	Aluminium activated malate transporter family protein 	LOC_Os02g49790.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208010.1.S1_at	A	A1TS	POPTR_0008s11790	POPTR_0008s11790 (11)	scaffold_8:7560186-7560504(-) (11)	NA	NA	NA	AT3G25855.1	Copper transport protein family 	LOC_Os09g24310.1	expressed protein	Medtr5g068190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208012.1.S1_at	A	A1TS	POPTR_0008s11940	POPTR_0008s11940 (11)	scaffold_8:7691891-7692165(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208013.1.S1_at	A	A1TS	POPTR_0008s11950	POPTR_0008s11950 (11)	scaffold_8:7695550-7695938(-) (11)	NA	Q9CA30	LOB domain-containing protein 42	AT1G68510.1	LOB domain-containing protein 42 	LOC_Os01g32770.1	"DUF260 domain containing protein, putative, expressed"	Medtr6g020260.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208015.1.S1_at	A	A1TS	POPTR_0008s12020	POPTR_0008s12020 (11)	scaffold_8:7747536-7747570(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208015.1.S1_s_at	A	A1TS	POPTR_0008s12020	POPTR_0008s12020 (11)	scaffold_8:7747678-7748112(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208016.1.S1_at	A	A1TS	POPTR_0008s12050	POPTR_0008s12050 (11)	scaffold_8:7771635-7772096(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT1G13410.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g38880.1	"tetratricopeptide-like helical, putative, expressed"	Medtr8g077580.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208017.1.S1_at	A	A1TS	POPTR_0008s12060	POPTR_0008s12060 (11)	scaffold_8:7792360-7792871(+) (11)	NA	Q5GHF7	Adenylate isopentenyltransferase	AT1G68460.1	isopentenyltransferase 1 	LOC_Os05g47840.1	"IPP transferase, putative, expressed"	Medtr1g140830.1	Isopentenyl transferase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208018.1.S1_at	A	A1TS	POPTR_0008s12100	POPTR_0008s12100 (11)	scaffold_8:7807239-7808996(-) (11)	NA	NA	NA	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.20802.1.S1_at	A	A1MS	POPTR_0005s08100	POPTR_0005s08100 (10)	scaffold_5:5574038-5574515(-) (10)	NA	Q9SIE1	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase	AT2G22250.3	aspartate aminotransferase 	LOC_Os01g65090.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g140320.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.208020.1.S1_at	A	A1TS	POPTR_0008s12130	POPTR_0008s12130 (11)	scaffold_8:7822013-7822389(+) (11)	NA	Q9LK95	Transcription factor MYB21	AT1G68320.1	myb domain protein 62 	LOC_Os01g03720.1	"MYB family transcription factor, putative, expressed"	Medtr1g140720.1	Phosphoglycerate/bisphosphoglycerate mutase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208022.1.S1_at	A	A1TS	POPTR_0008s12150	POPTR_0008s12150 (10)	scaffold_8:7845635-7846171(+) (10)	NA	NA	NA	AT1G68330.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48780.1); Has 155 Blast hits to 147 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 3; Plants - 126; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	NA	NA	Medtr1g140670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208023.1.S1_at	A	A1TS	POPTR_0008s12160	POPTR_0008s12160 (11)	scaffold_8:7853800-7854288(-) (11)	NA	NA	NA	AT1G25370.1	Protein of unknown function (DUF1639) 	LOC_Os01g49440.1	expressed protein	Medtr1g140640.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208024.1.S1_at	A	A1MS	POPTR_0008s12190	POPTR_0008s12190 (10)	scaffold_8:7873557-7874317(+) (10)	NA	NA	NA	AT5G38830.1	"Cysteinyl-tRNA synthetase, class Ia family protein "	LOC_Os09g38420.1	"cysteinyl-tRNA synthetase, putative, expressed"	Medtr1g140620.1	"Cysteinyl-tRNA synthetase, class Ia; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208025.1.S1_at	A	A1TS	POPTR_0008s12210	POPTR_0008s12210 (11)	scaffold_8:7880927-7881236(-) (11)	NA	Q39265	Zinc finger protein 6	AT1G68360.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g04120.1	"ZOS1-03 - C2H2 zinc finger protein, expressed"	Medtr1g140600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208026.1.S1_at	A	A1TS	POPTR_0008s12250	POPTR_0008s12250 (10)	scaffold_8:7915809-7916015(+) (10)	NA	NA	NA	AT1G10880.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208027.1.S1_at	A	A1TS	POPTR_0008s12280	POPTR_0008s12280 (11)	scaffold_8:7935219-7936151(+) (11)	NA	Q54FU9	Mitochondrial substrate carrier family protein W	AT1G25380.1	NAD+ transporter 2 	LOC_Os01g32980.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g068050.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208028.1.S1_at	A	A1TS	POPTR_0008s12300	POPTR_0008s12300 (11)	scaffold_8:7938749-7940090(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208029.1.S1_at	A	A1TS	POPTR_0008s12330	POPTR_0008s12330 (11)	scaffold_8:7953856-7954914(+) (11)	NA	A2RVT6	Reticulon-like protein B14	AT4G11220.1	VIRB2-interacting protein 2 	LOC_Os05g47690.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.208030.1.S1_at	A	A1TS	POPTR_0008s12360	POPTR_0008s12360 (11)	scaffold_8:7975815-7976085(+) (11)	NA	NA	NA	AT1G49540.1	elongator protein 2 	LOC_Os08g38570.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208031.1.S1_at	A	A1TS	POPTR_0008s12380	POPTR_0008s12380 (11)	scaffold_8:8000208-8001394(+) (11)	NA	Q8LFD1	"Putative lipid phosphate phosphatase 3, chloroplastic"	AT3G02600.5	lipid phosphate phosphatase 3 	LOC_Os05g47660.1	"lipid phosphatase protein, putative, expressed"	Medtr7g093870.1	"Phosphoesterase, PA-phosphatase related "	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.208032.1.S1_at	A	A1TS	POPTR_0008s12390	POPTR_0008s12390 (11)	scaffold_8:8004293-8004631(+) (11)	NA	Q9US40	Uncharacterized amino-acid permease C1039.01	AT2G01170.1	bidirectional amino acid transporter 1 	LOC_Os01g42234.1	"amino acid permease family protein, putative, expressed"	AC235665_40.1	Amino acid/polyamine transporter I AC235665.2 219297-222930 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208033.1.S1_at	A	A1TS	POPTR_0008s12410	POPTR_0008s12410 (11)	scaffold_8:8017310-8018475(+) (11)	NA	Q9C9F4	Putative zinc finger protein At1g68190	AT1G68190.1	B-box zinc finger family protein 	LOC_Os02g49230.5	"CCT/B-box zinc finger protein, putative, expressed"	AC235678_16.1	"Zinc finger, B-box AC235678.1 83858-81565 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208034.1.S1_at	A	A1TS	POPTR_0008s12420	POPTR_0008s12420 (11)	scaffold_8:8021847-8022311(-) (11)	NA	Q9FMY1	Cytochrome P450 86B1	AT4G39490.1	"cytochrome P450, family 96, subfamily A, polypeptide 10 "	LOC_Os03g04650.1	"cytochrome P450 protein, putative, expressed"	Medtr4g137010.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.208035.1.S1_at	A	A1TS	POPTR_0008s12450	POPTR_0008s12450 (10)	scaffold_8:8051183-8051907(+) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21230.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.208036.1.S1_at	A	A1TS	POPTR_0008s12470	POPTR_0008s12470 (11)	scaffold_8:8062493-8064532(-) (11)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT3G18210.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.208037.1.S1_at	A	A1TS	POPTR_0008s12490	POPTR_0008s12490 (11)	scaffold_8:8083245-8084052(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208038.1.S1_at	A	A1TS	POPTR_0008s12520	POPTR_0008s12520 (11)	scaffold_8:8104953-8106336(-) (11)	NA	Q4U3P8	Origin recognition complex subunit 4	AT2G01120.1	origin recognition complex subunit 4 	LOC_Os01g49010.2	"ORC4 - Putative origin recognition complex subunit 4, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208039.1.S1_at	A	A1TS	POPTR_0008s12540	POPTR_0008s12540 (11)	scaffold_8:8114491-8115083(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G15170.1	MATE efflux family protein 	LOC_Os05g48040.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.208041.1.S1_at	A	A1TS	POPTR_0008s12590	POPTR_0008s12590 (11)	scaffold_8:8152111-8152328(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208042.1.S1_at	A	A1TS	POPTR_0008s12600	POPTR_0008s12600 (11)	scaffold_8:8152972-8153127(+) (11)	NA	Q9C996	GDSL esterase/lipase 6	AT1G71120.1	GDSL-motif lipase/hydrolase 6 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g088820.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.208043.1.S1_at	A	A1TS	POPTR_0008s12600	POPTR_0008s12600 (11)	scaffold_8:8154299-8154967(+) (11)	NA	Q9C996	GDSL esterase/lipase 6	AT1G71120.1	GDSL-motif lipase/hydrolase 6 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g088820.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.208044.1.S1_x_at	A	A1TS	POPTR_0008s12620	POPTR_0008s12620 (11)	scaffold_8:8171357-8171953(+) (11)	NA	Q9ZU40	Sulfhydryl oxidase 2	AT2G01270.1	quiescin-sulfhydryl oxidase 2 	LOC_Os05g47930.3	"OsQSOXL1  quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed"	Medtr1g137690.1	Erv1/Alr; Thioredoxin fold 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016972|thiol oxidase activity	NA
PtpAffx.208045.1.S1_at	A	A1TS	POPTR_0008s12630	POPTR_0008s12630 (11)	scaffold_8:8172887-8175184(-) (11)	NA	NA	NA	AT2G01275.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g03100.2	"protein binding protein, putative, expressed"	Medtr1g137400.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208045.1.S1_x_at	A	A1TS	POPTR_0008s12630	POPTR_0008s12630 (11)	scaffold_8:8172887-8175141(-) (11)	NA	NA	NA	AT2G01275.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g03100.2	"protein binding protein, putative, expressed"	Medtr1g137400.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208046.1.S1_at	A	A1TS	POPTR_0008s12640	POPTR_0008s12640 (11)	scaffold_8:8178081-8178687(+) (11)	NA	Q9FGW0	Putative fasciclin-like arabinogalactan protein 20	AT5G40940.1	putative fasciclin-like arabinogalactan protein 20 	NA	NA	Medtr1g137380.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208047.1.S1_x_at	A	A1TS	POPTR_0008s12680	POPTR_0008s12680 (11)	scaffold_8:8200466-8200956(+) (11)	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.2	expressed protein	Medtr4g156620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208048.1.S1_at	A	A1TS	POPTR_0008s12700	POPTR_0008s12700 (11)	scaffold_8:8211895-8212383(+) (11)	NA	Q5QQ56	Xylosyltransferase 1	AT1G71070.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g03160.2	"xylosyltransferase, putative, expressed"	Medtr1g137280.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.208049.1.S1_at	A	A1MS	POPTR_0008s12710	POPTR_0008s12710 (11)	scaffold_8:8213661-8213999(+) (11)	NA	Q9C9A2	"Pentatricopeptide repeat-containing protein At1g71060, mitochondrial"	AT1G71060.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g32090.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g137270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208050.1.S1_at	A	A1TS	POPTR_0008s12720	POPTR_0008s12720 (11)	scaffold_8:8216836-8217389(-) (11)	NA	Q9FGW0	Putative fasciclin-like arabinogalactan protein 20	AT5G40940.1	putative fasciclin-like arabinogalactan protein 20 	NA	NA	Medtr1g137380.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208051.1.S1_at	A	A1MS	POPTR_0008s12730	POPTR_0008s12730 (11)	scaffold_8:8219254-8219531(-) (11)	NA	NA	NA	AT2G35040.1	AICARFT/IMPCHase bienzyme family protein 	LOC_Os08g10570.2	"bifunctional purine biosynthesis protein purH, putative, expressed"	Medtr5g103430.1	AICARFT/IMPCHase bienzyme; MGS-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208052.1.S1_at	A	A1TS	POPTR_0008s12740	POPTR_0008s12740 (11)	scaffold_8:8225850-8226738(+) (11)	NA	NA	NA	AT1G23000.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g03490.1	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.208053.1.S1_at	A	A1TS	POPTR_0008s12770	POPTR_0008s12770 (11)	scaffold_8:8251163-8252712(+) (11)	NA	Q6NLC8	Uncharacterized protein At1g66480	AT2G01340.1	Encodes a protein whose expression is responsive to nematode infection. 	LOC_Os06g14780.2	expressed protein	Medtr5g087100.1	"Uncharacterized protein At1g66480, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208055.1.S1_at	A	A1MS	POPTR_0008s12820	POPTR_0008s12820 (11)	scaffold_8:8315427-8315835(-) (11)	NA	NA	NA	AT1G70950.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr3g137120.2	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208056.1.S1_at	A	A1TS	POPTR_0008s12840	POPTR_0008s12840 (11)	scaffold_8:8344319-8346328(-) (11)	NA	Q0JKX1	Homeobox-leucine zipper protein HOX3	AT2G01430.1	homeobox-leucine zipper protein 17 	LOC_Os01g45570.1	"homeobox associated leucine zipper, putative, expressed"	Medtr2g071640.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.208056.1.S1_s_at	A	A2TS	POPTR_0008s12840	POPTR_0010s12300 (11)//POPTR_0008s12840 (11)	scaffold_10:12332737-12334991(+) (11)//scaffold_8:8344334-8346381(-) (11)	NA	Q0JKX1	Homeobox-leucine zipper protein HOX3	AT2G01430.1	homeobox-leucine zipper protein 17 	LOC_Os01g45570.1	"homeobox associated leucine zipper, putative, expressed"	Medtr2g071640.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.208056.1.S1_x_at	A	A1TS	POPTR_0008s12840	POPTR_0008s12840 (11)	scaffold_8:8344320-8346403(-) (11)	NA	Q0JKX1	Homeobox-leucine zipper protein HOX3	AT2G01430.1	homeobox-leucine zipper protein 17 	LOC_Os01g45570.1	"homeobox associated leucine zipper, putative, expressed"	Medtr2g071640.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.208057.1.S1_at	A	A1TS	POPTR_0008s12860	POPTR_0008s12860 (11)	scaffold_8:8368122-8368372(-) (11)	NA	Q9M9Q6	Serine carboxypeptidase-like 50	AT1G15000.1	serine carboxypeptidase-like 50 	LOC_Os05g50600.1	"OsSCP31 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr5g104840.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.208059.1.S1_at	A	A1MS	POPTR_0008s12920	POPTR_0008s12920 (10)	scaffold_8:8406844-8408672(+) (10)	NA	Q54R62	Uridine-cytidine kinase C	AT2G01460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g21110.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208060.1.S1_at	A	A1TS	POPTR_0008s12920	POPTR_0008s12920 (9)	scaffold_8:8415397-8416968(+) (11)	NA	Q54R62	Uridine-cytidine kinase C	AT2G01460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g21110.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208061.1.S1_at	A	A1TS	POPTR_0008s12960	POPTR_0008s12960 (11)	scaffold_8:8461654-8462358(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G01480.1	O-fucosyltransferase family protein 	LOC_Os05g38490.1	"growth regulator related protein, putative"	Medtr1g034900.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208061.1.S1_x_at	A	A1TS	POPTR_0008s12960	POPTR_0008s12960 (11)	scaffold_8:8460894-8462358(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G01480.1	O-fucosyltransferase family protein 	LOC_Os05g38490.1	"growth regulator related protein, putative"	Medtr1g034900.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208062.1.S1_at	A	A1TS	POPTR_0008s12980	POPTR_0008s12980 (11)	scaffold_8:8465588-8468197(-) (11)	NA	NA	NA	AT1G70900.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23110.4); Has 57 Blast hits to 57 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g33640.2	expressed protein	Medtr1g034920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208063.1.S1_at	A	A1TS	POPTR_0008s13110	POPTR_0008s13110 (10)	scaffold_8:8561829-8562353(+) (10)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208064.1.S1_at	A	A1TS	POPTR_0008s13120	POPTR_0008s13120 (11)	scaffold_8:8572525-8573022(+) (11)	NA	NA	NA	AT1G23180.1	ARM repeat superfamily protein 	LOC_Os01g34080.1	"armadillo/beta-catenin-like repeat family protein, expressed"	Medtr1g035040.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208065.1.S1_at	A	A1TS	POPTR_0008s13130	POPTR_0008s13130 (11)	scaffold_8:8573752-8574084(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208067.1.S1_at	A	A1TS	POPTR_0008s13240	POPTR_0008s13240 (11)	scaffold_8:8668694-8669409(+) (11)	NA	Q9ZU90	F-box protein SKIP28	AT2G01620.1	RNI-like superfamily protein 	LOC_Os08g33140.1	"F-box domain containing protein, expressed"	Medtr4g157480.1	"4Fe-4S ferredoxin, iron-sulfur binding; Cyclin-like F-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208068.1.S1_at	A	A1TS	POPTR_0008s13250	POPTR_0008s13250 (11)	scaffold_8:8672910-8673978(-) (11)	NA	Q9ZU91	"Glucan endo-1,3-beta-glucosidase 3"	AT2G01630.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g085920.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.208069.1.S1_at	A	A1TS	POPTR_0008s13270	POPTR_0008s13270 (10)	scaffold_8:8683173-8683744(+) (11)	NA	Q9W1X7	Mediator of RNA polymerase II transcription subunit 23	AT1G23230.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). 	LOC_Os02g49992.1	expressed protein	AC233676_14.1	hypothetical protein AC233676.2 65637-60727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208070.1.S1_at	A	A1TS	POPTR_0008s13270	POPTR_0008s13270 (10)	scaffold_8:8696471-8699023(+) (11)	NA	Q9W1X7	Mediator of RNA polymerase II transcription subunit 23	AT1G23230.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). 	LOC_Os02g49992.1	expressed protein	AC233676_14.1	hypothetical protein AC233676.2 65637-60727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208072.1.S1_at	A	A1TS	POPTR_0008s13380	POPTR_0008s13380 (11)	scaffold_8:8781455-8782484(-) (11)	NA	Q91WC0	SET domain-containing protein 3	AT1G24610.1	Rubisco methyltransferase family protein 	LOC_Os02g50100.1	"SET domain-containing protein, putative, expressed"	Medtr4g157190.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208073.1.S1_at	A	A1TS	POPTR_0008s13380	POPTR_0008s13380 (9)	scaffold_8:8784191-8784571(-) (11)	NA	Q91WC0	SET domain-containing protein 3	AT1G24610.1	Rubisco methyltransferase family protein 	LOC_Os02g50100.1	"SET domain-containing protein, putative, expressed"	Medtr4g157190.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208074.1.S1_at	A	A1TS	POPTR_0008s13390	POPTR_0008s13390 (11)	scaffold_8:8788420-8788724(-) (11)	NA	Q9FYK2	Probable calcium-binding protein CML25	AT1G24620.1	EF hand calcium-binding protein family 	LOC_Os01g72100.1	"OsCML10 - Calmodulin-related calcium sensor protein, expressed"	AC233676_4.1	Calcium-binding EF-hand AC233676.2 19416-20012 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208075.1.S1_at	A	A1TS	POPTR_0008s13400	POPTR_0008s13400 (11)	scaffold_8:8789948-8790321(+) (11)	NA	P35129	Ubiquitin-conjugating enzyme E2 2	AT3G08690.2	ubiquitin-conjugating enzyme 11 	LOC_Os01g60410.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.208076.1.S1_at	A	A1TS	POPTR_0008s13410	POPTR_0008s13410 (11)	scaffold_8:8795323-8795904(+) (11)	NA	Q9ZU96	Ankyrin repeat-containing protein At2g01680	AT2G01680.1	Ankyrin repeat family protein 	LOC_Os02g50270.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr4g157130.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208077.1.S1_at	A	A1TS	POPTR_0008s13430	POPTR_0008s13430 (11)	scaffold_8:8814518-8815567(-) (11)	NA	O75694	Nuclear pore complex protein Nup155	AT1G14850.1	nucleoporin 155 	LOC_Os06g20090.1	"NUP155, putative, expressed"	Medtr4g157110.1	Non-repetitive/WGA-negative nucleoporin 	GO:0006913|nucleocytoplasmic transport	GO:0017056|structural constituent of nuclear pore	GO:0005643|nuclear pore
PtpAffx.208078.1.S1_at	A	A1TS	POPTR_0008s13430	POPTR_0008s13430 (9)	scaffold_8:8818019-8820149(-) (11)	NA	O75694	Nuclear pore complex protein Nup155	AT1G14850.1	nucleoporin 155 	LOC_Os06g20090.1	"NUP155, putative, expressed"	Medtr4g157110.1	Non-repetitive/WGA-negative nucleoporin 	GO:0006913|nucleocytoplasmic transport	GO:0017056|structural constituent of nuclear pore	GO:0005643|nuclear pore
PtpAffx.208079.1.S1_at	A	A1TS	POPTR_0008s13440	POPTR_0008s13440 (11)	scaffold_8:8831655-8831837(-) (11)	NA	Q8GUU2	E3 ubiquitin protein ligase RIE1	AT1G68070.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os04g48050.1	"RING zinc finger protein, putative, expressed"	Medtr4g157080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208080.1.S1_at	A	A1TS	POPTR_0008s13470	POPTR_0008s13470 (11)	scaffold_8:8865897-8866383(-) (11)	NA	NA	NA	AT5G62480.2	glutathione S-transferase tau 9 	NA	NA	Medtr5g043840.1	"Glutathione S-transferase, C-terminal-like; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208081.1.S1_x_at	A	A1TS	POPTR_0008s13510	POPTR_0008s13510 (11)	scaffold_8:8886985-8888344(+) (11)	NA	P49420	Aspartate-semialdehyde dehydrogenase	AT1G14810.1	semialdehyde dehydrogenase family protein 	LOC_Os03g55280.1	"semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed"	Medtr4g156590.1	"Aspartate-semialdehyde dehydrogenase, microbial "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016620|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0046983|protein dimerization activity"	GO:0005737|cytoplasm
PtpAffx.208082.1.S1_at	A	A1TS	POPTR_0008s13520	POPTR_0008s13520 (11)	scaffold_8:8900422-8900925(+) (11)	NA	Q0DXS3	Probable RNA-dependent RNA polymerase 1	AT1G14790.1	RNA-dependent RNA polymerase 1 	LOC_Os02g50330.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125360.1	RNA-binding region RNP-1 (RNA recognition motif); RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208084.1.S1_at	A	A1TS	POPTR_0008s13590	POPTR_0008s13590 (11)	scaffold_8:8940626-8940967(-) (11)	NA	Q94AH8	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6"	AT1G68020.2	UDP-Glycosyltransferase / trehalose-phosphatase family protein 	LOC_Os09g23350.1	"trehalose synthase, putative, expressed"	Medtr4g156760.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.208085.1.S1_a_at	A	A1TS	POPTR_0008s13610	POPTR_0008s13610 (11)	scaffold_8:8963744-8963782(-) (11)	NA	P93711	Caffeoyl-CoA O-methyltransferase	AT1G67980.1	caffeoyl-CoA 3-O-methyltransferase 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208085.1.S1_at	A	A1MS	POPTR_0008s13610	POPTR_0008s13610 (9)	scaffold_8:8963253-8964004(-) (9)	NA	P93711	Caffeoyl-CoA O-methyltransferase	AT1G67980.1	caffeoyl-CoA 3-O-methyltransferase 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208086.1.S1_at	A	A1TS	POPTR_0008s13640	POPTR_0008s13640 (11)	scaffold_8:8980547-8981381(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208087.1.S1_at	A	A1TS	POPTR_0008s13650	POPTR_0008s13650 (11)	scaffold_8:8988609-8989165(+) (11)	NA	Q9C810	PHD finger protein At1g33420	AT2G01810.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os03g50780.1	"PHD-finger domain containing protein, putative, expressed"	Medtr5g085540.1	"Calcium-binding EF-hand; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208088.1.S1_at	A	A1TS	POPTR_0008s13660	POPTR_0008s13660 (11)	scaffold_8:8994306-8995292(-) (11)	NA	NA	NA	AT2G01818.1	PLATZ transcription factor family protein 	LOC_Os02g07650.1	"zinc-binding protein, putative, expressed"	Medtr4g156490.1	"Zinc finger, B-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208089.1.S1_at	A	A1TS	POPTR_0008s13680	POPTR_0008s13680 (11)	scaffold_8:9000136-9006303(+) (11)	NA	Q9U3H8	Protein TAPT1 homolog	AT1G67960.1	"CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). "	LOC_Os03g50730.1	"transmembrane anterior posterior transformation 1, putative, expressed"	Medtr3g115210.1	"Protein of unknown function DUF747, CMV receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208090.1.S1_at	A	A1TS	POPTR_0008s13690	POPTR_0008s13690 (11)	scaffold_8:9009286-9009840(+) (11)	NA	Q8LBH2	Putative clathrin assembly protein At2g01600	AT2G01600.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr4g156350.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.208091.1.S1_at	A	A1TS	POPTR_0008s13720	POPTR_0008s13720 (11)	scaffold_8:9028277-9028588(-) (11)	NA	Q9C5U0	Histidine kinase 4	AT2G01830.2	CHASE domain containing histidine kinase protein 	LOC_Os03g50860.1	"histidine kinase, putative, expressed"	Medtr4g156220.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.208092.1.S1_at	A	A1TS	POPTR_0008s13760	POPTR_0008s13760 (11)	scaffold_8:9066428-9066920(-) (11)	NA	Q95204	Cytochrome b561	AT1G14730.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os10g02920.1	"cytochrome b561, putative, expressed"	AC235674_2.2	Cytochrome b561 / ferric reductase transmembrane AC235674.1 14925-10160 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.208093.1.S1_at	A	A1TS	POPTR_0008s13770	POPTR_0008s13770 (11)	scaffold_8:9069731-9071163(-) (11)	NA	Q925G2	Cytochrome b reductase 1	AT1G14730.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os03g50820.1	"cytochrome b561, putative, expressed"	CU633465_7.1	Cytochrome b561 / ferric reductase transmembrane CU633465.7 43513-41380 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.208094.1.S1_at	A	A1TS	POPTR_0008s13800	POPTR_0008s13800 (11)	scaffold_8:9097920-9098735(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT4G35420.1	dihydroflavonol 4-reductase-like1 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr2g122390.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.208095.1.S1_s_at	A	A1TS	POPTR_0008s13820	POPTR_0008s13820 (11)	scaffold_8:9107402-9108615(-) (11)	NA	P48261	Anthranilate synthase component II	AT1G25220.1	anthranilate synthase beta subunit 1 	LOC_Os03g50880.1	"class I glutamine amidotransferase, putative, expressed"	Medtr1g121260.1	Anthranilate synthase component II/delta crystallin 	NA	GO:0003824|catalytic activity	NA
PtpAffx.208096.1.S1_at	A	A1TS	POPTR_0008s13890	POPTR_0008s13890 (11)	scaffold_8:9153169-9154444(-) (11)	NA	Q9C9X3	Annexin D5	AT1G68090.1	annexin 5 	LOC_Os09g23160.1	"annexin, putative, expressed"	Medtr4g154520.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.208097.1.S1_at	A	A1TS	POPTR_0008s13900	POPTR_0008s13900 (11)	scaffold_8:9156927-9158673(-) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT2G01900.1	DNAse I-like superfamily protein 	LOC_Os03g13520.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr1g046590.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208098.1.S1_at	A	A1TS	POPTR_0008s13910	POPTR_0008s13910 (9)	scaffold_8:9180074-9180285(+) (11)	NA	Q9SIS3	65-kDa microtubule-associated protein 6	AT2G01910.2	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os09g27700.2	"microtubule associated protein, putative, expressed"	Medtr1g046560.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208099.1.S1_at	A	A1TS	POPTR_0008s13910	POPTR_0008s13910 (11)	scaffold_8:9181722-9181910(+) (11)	NA	Q9SIS3	65-kDa microtubule-associated protein 6	AT2G01910.2	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os09g27700.2	"microtubule associated protein, putative, expressed"	Medtr1g046560.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208100.1.S1_at	A	A1TS	POPTR_0008s13950	POPTR_0008s13950 (11)	scaffold_8:9199790-9200317(+) (11)	NA	Q9FRH3	Putative clathrin assembly protein At1g25240	AT1G25240.1	ENTH/VHS/GAT family protein 	LOC_Os08g36410.1	ANTH domain containing protein	Medtr3g109770.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.208101.1.S1_at	A	A1MS	POPTR_0008s13970	POPTR_0008s13970 (11)	scaffold_8:9213383-9213651(+) (11)	NA	Q9C810	PHD finger protein At1g33420	AT5G22260.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os09g27620.1	"PHD-finger domain containing protein, putative"	Medtr5g044070.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208101.1.S1_x_at	A	A1MS	POPTR_0008s13970	POPTR_0008s13970 (11)	scaffold_8:9213345-9213651(+) (11)	NA	Q9C810	PHD finger protein At1g33420	AT5G22260.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os09g27620.1	"PHD-finger domain containing protein, putative"	Medtr5g044070.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208103.1.S1_at	A	A1TS	POPTR_0008s14040	POPTR_0008s14040 (11)	scaffold_8:9273609-9274167(-) (11)	NA	Q67UC7	Probable potassium transporter 17	AT2G30070.1	potassium transporter 1 	LOC_Os09g27580.1	"potassium transporter, putative, expressed"	Medtr7g130210.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.208104.1.S1_at	A	A1TS	POPTR_0008s14070	POPTR_0008s14070 (11)	scaffold_8:9294497-9294977(-) (11)	NA	Q07346	Glutamate decarboxylase	AT2G02010.1	glutamate decarboxylase 4 	LOC_Os03g51080.1	"glutamate decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.208105.1.S1_at	A	A1TS	POPTR_0008s14100	POPTR_0008s14100 (11)	scaffold_8:9312271-9312572(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208106.1.S1_at	A	A1TS	POPTR_0008s14120	POPTR_0008s14120 (11)	scaffold_8:9318396-9318974(-) (11)	NA	P50160	Sex determination protein tasselseed-2	AT3G42960.1	TAPETUM 1 	LOC_Os07g46970.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr4g108360.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.208109.1.S1_at	A	A1TS	POPTR_0008s14150	POPTR_0008s14150 (11)	scaffold_8:9345036-9345184(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208110.1.S1_at	A	A1TS	POPTR_0008s14160	POPTR_0008s14160 (11)	scaffold_8:9349754-9350013(+) (11)	NA	P0C042	Uncharacterized protein At4g15970	AT1G14590.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os04g49590.1	"regulatory protein, putative, expressed"	Medtr1g039640.1	"Uncharacterized protein At4g15970, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208110.1.S1_s_at	A	A1TS	POPTR_0008s14160	POPTR_0008s14160 (11)	scaffold_8:9348828-9349748(+) (11)	NA	P0C042	Uncharacterized protein At4g15970	AT1G14590.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os04g49590.1	"regulatory protein, putative, expressed"	Medtr1g039640.1	"Uncharacterized protein At4g15970, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208111.1.S1_at	A	A1TS	POPTR_0008s14240	POPTR_0008s14240 (11)	scaffold_8:9422666-9423223(-) (11)	NA	Q66GP4	"Pentatricopeptide repeat-containing protein At5g13770, chloroplastic"	AT5G13770.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os04g49350.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g007390.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208112.1.S1_s_at	A	A2TS	POPTR_0008s14270	POPTR_0008s14270 (11)//POPTR_0211s00200 (11)	scaffold_211:4125-4164(+) (11)//scaffold_8:9470320-9470359(-) (11)	NA	NA	NA	AT3G18420.1	Protein prenylyltransferase superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208115.1.S1_at	A	A2TS	POPTR_0008s14260	POPTR_0008s14260 (11)//POPTR_0008s14250 (9)	scaffold_8:9435553-9435903(+) (9)//scaffold_8:9464973-9465370(+) (11)	NA	Q8BV79	TPR and ankyrin repeat-containing protein 1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g51090.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr3g169640.1	"Helicase, superfamily 1, UvrD-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208117.1.S1_s_at	A	A2TS	POPTR_0008s14250	POPTR_0008s14250 (11)//POPTR_0008s14260 (11)	scaffold_8:9437747-9438392(+) (11)//scaffold_8:9467187-9467832(+) (11)	NA	Q8BV79	TPR and ankyrin repeat-containing protein 1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g51090.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr3g169640.1	"Helicase, superfamily 1, UvrD-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208118.1.S1_at	A	A1TS	POPTR_0008s14270	POPTR_0008s14270 (11)	scaffold_8:9470647-9470728(-) (11)	NA	NA	NA	AT3G18420.1	Protein prenylyltransferase superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208118.1.S1_x_at	A	A1TS	POPTR_0008s14270	POPTR_0008s14270 (11)	scaffold_8:9470647-9470782(-) (11)	NA	NA	NA	AT3G18420.1	Protein prenylyltransferase superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208119.1.S1_at	A	A1TS	POPTR_0008s14280	POPTR_0008s14280 (11)	scaffold_8:9473994-9477607(-) (11)	NA	Q56XX3	Uncharacterized protein At2g02148	AT2G02148.1	unknown protein. 	NA	NA	Medtr5g011010.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208120.1.S1_at	A	A1TS	POPTR_0008s14290	POPTR_0008s14290 (11)	scaffold_8:9479924-9480459(+) (11)	NA	P0C894	Putative pentatricopeptide repeat-containing protein At2g02150	AT2G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g36910.1	"pentatricopeptide, putative"	Medtr5g085730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208121.1.S1_at	A	A1TS	POPTR_0008s14300	POPTR_0008s14300 (11)	scaffold_8:9482999-9483495(-) (11)	NA	Q9T0J4	Putative F-box protein At4g38870	AT4G38870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr2g038820.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208122.1.S1_at	A	A1TS	POPTR_0008s14370	POPTR_0008s14370 (11)	scaffold_8:9529635-9535977(+) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os01g62870.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.208123.1.S1_at	A	A1TS	POPTR_0008s14400	POPTR_0008s14400 (11)	scaffold_8:9559931-9560919(+) (11)	NA	NA	NA	AT3G11920.1	glutaredoxin-related 	LOC_Os10g34170.1	"glutaredoxin domain containing protein, putative, expressed"	AC233100_14.1	Thioredoxin-like fold AC233100.6 58720-57564 E EGN_Mt090430 200	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.208124.1.S1_at	A	A1TS	POPTR_0008s14410	POPTR_0008s14410 (11)	scaffold_8:9564800-9565829(+) (11)	NA	NA	NA	AT3G11920.1	glutaredoxin-related 	LOC_Os10g34170.1	"glutaredoxin domain containing protein, putative, expressed"	AC233100_25.1	Protein of unknown function DUF547 AC233100.6 89976-92470 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208125.1.S1_at	A	A1TS	POPTR_0008s14430	POPTR_0008s14430 (11)	scaffold_8:9572410-9572809(+) (11)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT1G10850.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g58390.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208126.1.S1_at	A	A1TS	POPTR_0008s14460	POPTR_0008s14460 (10)	scaffold_8:9601815-9602635(+) (10)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT4G21200.1	gibberellin 2-oxidase 8 	LOC_Os02g41954.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr5g005780.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.208127.1.S1_at	A	A1TS	POPTR_0008s14470	POPTR_0008s14470 (11)	scaffold_8:9606364-9606449(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208127.1.S1_s_at	A	A1TS	POPTR_0008s14470	POPTR_0008s14470 (11)	scaffold_8:9605574-9606355(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208128.1.S1_at	A	A1TS	POPTR_0008s14490	POPTR_0008s14490 (11)	scaffold_8:9621112-9622666(+) (11)	NA	O04630	"Threonyl-tRNA synthetase, mitochondrial"	AT5G26830.1	Threonyl-tRNA synthetase 	LOC_Os08g19850.1	"threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed"	Medtr5g035990.1	"tRNA synthetase, class II (G, H, P and S); Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.208128.1.S1_s_at	A	A2TS	POPTR_0008s14490	POPTR_0010s10660 (11)//POPTR_0008s14490 (11)	scaffold_10:11121498-11122647(-) (11)//scaffold_8:9622520-9623549(+) (11)	NA	O04630	"Threonyl-tRNA synthetase, mitochondrial"	AT5G26830.1	Threonyl-tRNA synthetase 	LOC_Os08g19850.1	"threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed"	Medtr5g035990.1	"tRNA synthetase, class II (G, H, P and S); Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.208128.1.S1_x_at	A	A1TS	POPTR_0008s14490	POPTR_0008s14490 (11)	scaffold_8:9621112-9623357(+) (11)	NA	O04630	"Threonyl-tRNA synthetase, mitochondrial"	AT5G26830.1	Threonyl-tRNA synthetase 	LOC_Os08g19850.1	"threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed"	Medtr5g035990.1	"tRNA synthetase, class II (G, H, P and S); Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.208129.1.S1_at	A	A1TS	POPTR_0008s14500	POPTR_0008s14500 (11)	scaffold_8:9626066-9626599(+) (11)	NA	Q9FJ76	Probable long-chain-alcohol O-fatty-acyltransferase 5	AT5G55340.1	MBOAT (membrane bound O-acyl transferase) family protein 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr5g101580.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208130.1.S1_at	A	A1TS	POPTR_0008s14510	POPTR_0008s14510 (11)	scaffold_8:9630440-9631362(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os01g58910.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g124870.1	"Auxin-induced protein 5NG4, related "	NA	NA	GO:0016020|membrane
PtpAffx.208131.1.S1_at	A	A1TS	POPTR_0008s14530	POPTR_0008s14530 (11)	scaffold_8:9639692-9641107(-) (11)	NA	NA	NA	AT1G24040.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os04g39140.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr5g036340.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.208132.1.S1_s_at	A	A1TS	POPTR_0008s14720	POPTR_0008s14720 (11)	scaffold_8:9769756-9773040(+) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.208132.1.S1_x_at	A	A1TS	POPTR_0008s14720	POPTR_0008s14720 (11)	scaffold_8:9772686-9772972(+) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.208133.1.S1_at	A	A1TS	POPTR_0008s14730	POPTR_0008s14730 (11)	scaffold_8:9776980-9777212(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208134.1.S1_x_at	A	A1TS	POPTR_0008s14760	POPTR_0008s14760 (11)	scaffold_8:9790138-9791812(+) (11)	NA	O80605	Sucrose transport protein SUC3	AT2G02860.1	sucrose transporter 2 	LOC_Os02g58080.1	"transporter, major facilitator family, putative, expressed"	Medtr8g146560.1	"General substrate transporter; Sucrose/H+ symporter, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208135.1.S1_at	A	A1TS	POPTR_0008s14790	POPTR_0008s14790 (10)	scaffold_8:9823563-9826455(-) (10)	NA	P10244	Myb-related protein B	AT1G14350.2	Duplicated homeodomain-like superfamily protein 	LOC_Os07g43420.1	"MYB family transcription factor, putative, expressed"	Medtr5g039940.2	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208136.1.S1_at	A	A1TS	POPTR_0008s14810	POPTR_0008s14810 (11)	scaffold_8:9847660-9848522(+) (11)	NA	P15722	Probable pectate lyase P59	AT3G01270.1	Pectate lyase family protein 	LOC_Os06g38510.2	"pectate lyase precursor, putative, expressed"	Medtr8g112850.1	"Pectate lyase, N-terminal; Virulence factor, pectin lyase fold "	NA	GO:0030570|pectate lyase activity	NA
PtpAffx.208137.1.S1_at	A	A1TS	POPTR_0008s14820	POPTR_0008s14820 (11)	scaffold_8:9850149-9850978(+) (11)	NA	Q8LSN2	AP2-like ethylene-responsive transcription factor BBM2	AT5G17430.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g42570.1	"AP2/EREBP transcription factor BABY BOOM, putative, expressed"	Medtr7g008760.1	Pathogenesis-related transcriptional factor and ERF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208138.1.S1_at	A	A1TS	POPTR_0008s14870	POPTR_0008s14870 (9)	scaffold_8:9877875-9878260(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208139.1.S1_s_at	A	A1TS	POPTR_0008s14880	POPTR_0008s14880 (11)	scaffold_8:9889725-9890492(+) (11)	NA	O22042	Mitogen-activated protein kinase kinase kinase 3	AT3G06030.1	NPK1-related protein kinase 3 	LOC_Os09g21510.1	"STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr7g139260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208141.1.S1_at	A	A1TS	POPTR_0008s14980	POPTR_0008s14980 (11)	scaffold_8:9986643-9986965(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208142.1.S1_at	A	A1TS	POPTR_0008s14990	POPTR_0008s14990 (11)	scaffold_8:9990716-9992780(+) (11)	NA	Q8GYM6	Cyclin-T1-4	AT4G19600.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr1g132790.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208143.1.S1_at	A	A1TS	POPTR_0008s14990	POPTR_0008s14990 (9)	scaffold_8:9995412-9996541(+) (11)	NA	Q8GYM6	Cyclin-T1-4	AT4G19600.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr1g132790.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208144.1.S1_at	A	A1TS	POPTR_0008s15000	POPTR_0008s15000 (11)	scaffold_8:10000472-10001740(+) (11)	NA	P92943	Chloride channel protein CLC-d	AT5G26240.1	chloride channel D 	LOC_Os03g48940.1	"chloride channel protein CLC-d, putative, expressed"	Medtr5g006110.1	"Cl- channel, voltage gated "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208145.1.S1_at	A	A1TS	POPTR_0008s15030	POPTR_0008s15030 (11)	scaffold_8:10018701-10019033(+) (11)	NA	Q9SFG0	Sugar transport protein 6	AT3G05960.1	sugar transporter 6 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.208146.1.S1_at	A	A1TS	POPTR_0008s15060	POPTR_0008s15060 (9)	scaffold_8:10057624-10057656(+) (9)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208146.1.S1_x_at	A	A1TS	POPTR_0008s15060	POPTR_0008s15060 (11)	scaffold_8:10057492-10057688(+) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208147.1.S1_at	A	A1TS	POPTR_0008s15090	POPTR_0008s15090 (11)	scaffold_8:10089563-10090059(+) (11)	NA	Q9LUW0	"Lipoxygenase 5, chloroplastic"	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr1g132610.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.208148.1.S1_at	A	A1TS	POPTR_0008s15130	POPTR_0008s15130 (11)	scaffold_8:10117927-10118609(-) (11)	NA	Q43077	Primary amine oxidase	AT1G31690.1	Copper amine oxidase family protein 	LOC_Os06g23114.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr1g132560.1	Copper amine oxidase; ; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.208149.1.S1_at	A	A1TS	POPTR_0008s15140	POPTR_0008s15140 (11)	scaffold_8:10129037-10129602(+) (11)	NA	Q9LHA8	Heat shock cognate 70 kDa protein 4	AT2G32120.2	heat-shock protein 70T-2 	LOC_Os03g11910.2	"DnaK family protein, putative, expressed"	Medtr5g006270.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20815.1.S1_at	A	A1TS	POPTR_0008s16150	POPTR_0008s16150 (11)	scaffold_8:10793410-10793598(-) (11)	NA	Q9ZUC1	"Quinone oxidoreductase-like protein At1g23740, chloroplastic"	AT1G23740.1	"Oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os08g29170.1	"dehydrogenase, putative, expressed"	Medtr6g012770.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.20815.1.S1_s_at	A	A1TS	POPTR_0008s16150	POPTR_0008s16150 (9)	scaffold_8:10793459-10794230(-) (9)	NA	Q9ZUC1	"Quinone oxidoreductase-like protein At1g23740, chloroplastic"	AT1G23740.1	"Oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os08g29170.1	"dehydrogenase, putative, expressed"	Medtr6g012770.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.208150.1.S1_at	A	A1TS	POPTR_0008s15170	POPTR_0008s15170 (11)	scaffold_8:10156543-10157054(+) (11)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208151.1.S1_at	A	A1TS	POPTR_0008s15180	POPTR_0008s15180 (10)	scaffold_8:10159989-10162638(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208153.1.S1_at	A	A1TS	POPTR_0008s15200	POPTR_0008s15200 (11)	scaffold_8:10175028-10175231(+) (11)	NA	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208153.1.S1_x_at	A	A1TS	POPTR_0008s15200	POPTR_0008s15200 (11)	scaffold_8:10175028-10175231(+) (11)	NA	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208154.1.S1_at	A	A1TS	POPTR_0008s15250	POPTR_0008s15250 (11)	scaffold_8:10187626-10188322(+) (11)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208156.1.S1_at	A	A1TS	POPTR_0008s15380	POPTR_0008s15380 (11)	scaffold_8:10243694-10243765(+) (11)	NA	Q9LJ98	Probable prefoldin subunit 2	AT3G22480.1	prefoldin 2 	LOC_Os12g30060.2	"prefoldin subunit, putative, expressed"	Medtr3g008490.1	Prefoldin beta-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.208157.1.S1_at	A	A1TS	POPTR_0008s15420	POPTR_0008s15420 (11)	scaffold_8:10261486-10262240(-) (11)	NA	NA	NA	AT1G05440.1	C-8 sterol isomerases 	LOC_Os03g53580.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208158.1.S1_at	A	A1MS	POPTR_0420s00220	POPTR_0420s00220 (10)	scaffold_420:39674-40291(+) (10)	NA	NA	NA	AT2G32040.1	Major facilitator superfamily protein 	LOC_Os07g07654.1	"BT1 family protein, putative, expressed"	Medtr3g068240.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208159.1.S1_at	A	A2TS	POPTR_0008s15540	POPTR_0008s15540 (11)//POPTR_0420s00200 (11)	scaffold_420:890-1061(-) (11)//scaffold_8:10315575-10315744(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208159.1.S1_s_at	A	A2TS	POPTR_0008s15540	POPTR_0008s15540 (11)//POPTR_0420s00200 (11)	scaffold_420:1052-1174(-) (11)//scaffold_8:10315460-10315582(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20816.1.S1_s_at	A	A1TS	POPTR_0005s21040	POPTR_0005s21040 (11)	scaffold_5:20161830-20162710(+) (11)	NA	O49048	Vacuolar protein sorting-associated protein 45 homolog	AT1G77140.1	vacuolar protein sorting 45 	LOC_Os02g24134.1	"Sec1 family transport protein, putative, expressed"	Medtr4g024800.1	Sec1-like protein 	GO:0006904|vesicle docking during exocytosis	NA	NA
PtpAffx.208160.1.S1_at	A	A1TS	POPTR_0008s15550	POPTR_0008s15550 (10)	scaffold_8:10322796-10324024(-) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT2G32010.2	CVP2 like 1 	LOC_Os03g57950.1	"type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed"	Medtr5g006980.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208161.1.S1_at	A	A1MS	POPTR_0008s15550	POPTR_0008s15550 (9)	scaffold_8:10325232-10325343(-) (9)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT2G32010.2	CVP2 like 1 	LOC_Os03g57950.1	"type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed"	Medtr5g006980.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208162.1.S1_at	A	A1MS	POPTR_0008s15600	POPTR_0008s15600 (11)	scaffold_8:10374268-10374842(-) (11)	NA	NA	NA	AT3G22790.1	Kinase interacting (KIP1-like) family protein 	LOC_Os10g28610.1	"KIP1, putative, expressed"	Medtr5g006650.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208163.1.S1_at	A	A1TS	POPTR_0008s15620	POPTR_0008s15620 (9)	scaffold_8:10396487-10396922(-) (11)	NA	O48809	Leucine-rich repeat extensin-like protein 2	AT1G62440.1	leucine-rich repeat/extensin 2 	LOC_Os02g04540.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g148740.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.208164.1.S1_at	A	A1TS	POPTR_0008s15640	POPTR_0008s15640 (11)	scaffold_8:10405105-10406221(-) (11)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.1	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.208165.1.S1_at	A	A1TS	POPTR_0008s15650	POPTR_0008s15650 (11)	scaffold_8:10424423-10425012(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT4G14750.1	IQ-domain 19 	LOC_Os03g43580.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g016090.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208166.1.S1_at	A	A1TS	POPTR_0008s15660	POPTR_0008s15660 (11)	scaffold_8:10430352-10431934(+) (11)	NA	NA	NA	AT4G14746.1	CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os03g06580.2	"MTN26L2 - MtN26 family protein precursor, expressed"	Medtr7g140750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208167.1.S1_at	A	A1TS	POPTR_0008s15700	POPTR_0008s15700 (11)	scaffold_8:10465526-10465912(+) (11)	NA	Q9M7I7	"Chlorophyllase-2, chloroplastic"	AT5G43860.1	chlorophyllase 2 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208168.1.S1_at	A	A1TS	POPTR_0008s15750	POPTR_0008s15750 (10)	scaffold_8:10503402-10503616(+) (10)	NA	NA	NA	AT1G04200.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os01g56630.1	"dymeclin, putative, expressed"	Medtr4g072570.1	Protein of unknown function UPF0066 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208171.1.S1_at	A	A1TS	POPTR_0008s15840	POPTR_0008s15840 (11)	scaffold_8:10555253-10556648(+) (11)	NA	Q7RZD3	Serine/threonine-protein kinase ste-20	AT1G04210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g53250.1	expressed protein	Medtr2g017390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.208173.1.S1_at	A	A1TS	POPTR_0008s15890	POPTR_0008s15890 (11)	scaffold_8:10603944-10604248(-) (11)	NA	Q9LIK7	"Putative calcium-transporting ATPase 13, plasma membrane-type"	AT3G22910.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.208173.1.S1_x_at	A	A1TS	POPTR_0008s15890	POPTR_0008s15890 (11)	scaffold_8:10603953-10604248(-) (11)	NA	Q9LIK7	"Putative calcium-transporting ATPase 13, plasma membrane-type"	AT3G22910.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.208175.1.S1_at	A	A1TS	POPTR_0008s15980	POPTR_0008s15980 (9)	scaffold_8:10670748-10670788(+) (9)	NA	NA	NA	AT3G22990.1	ARM repeat superfamily protein 	LOC_Os07g41900.1	expressed protein	AC233668_13.1	Armadillo-like helical AC233668.2 41900-46754 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208175.1.S1_s_at	A	A1TS	POPTR_0008s15980	POPTR_0008s15980 (11)	scaffold_8:10670036-10670761(+) (11)	NA	NA	NA	AT3G22990.1	ARM repeat superfamily protein 	LOC_Os07g41900.1	expressed protein	AC233668_13.1	Armadillo-like helical AC233668.2 41900-46754 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208176.1.S1_at	A	A1TS	POPTR_0008s16000	POPTR_0008s16000 (9)	scaffold_8:10680798-10681112(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208177.1.S1_at	A	A1TS	POPTR_0008s16010	POPTR_0008s16010 (11)	scaffold_8:10686347-10686913(+) (11)	NA	Q9SUL7	CBL-interacting serine/threonine-protein kinase 4	AT4G14580.1	CBL-interacting protein kinase 4 	LOC_Os03g43440.1	"CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	AC233668_30.1	"NAF; Serine/threonine protein kinase, active site AC233668.2 124906-121950 E EGN_Mt090430 200"	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208178.1.S1_at	A	A1TS	POPTR_0008s16020	POPTR_0008s16020 (11)	scaffold_8:10689513-10690473(-) (11)	NA	Q9LS88	Pentatricopeptide repeat-containing protein At3g23020	AT3G23020.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06710.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g111790.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208179.1.S1_at	A	A1TS	POPTR_0008s16050	POPTR_0008s16050 (11)	scaffold_8:10708937-10709443(+) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g45750.1	"protein kinase domain containing protein, expressed"	Medtr5g045500.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208180.1.S1_at	A	A1TS	POPTR_0008s16300	POPTR_0008s16300 (10)	scaffold_8:10711245-10711295(-) (11)//scaffold_8:10925272-10925322(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208180.1.S1_x_at	A	A1TS	POPTR_0008s16300	POPTR_0008s16300 (11)	scaffold_8:10711237-10711456(-) (11)//scaffold_8:10920280-10925330(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208181.1.S1_at	A	A1TS	POPTR_0008s16070	POPTR_0008s16070 (9)	scaffold_8:10730324-10732236(+) (10)	NA	Q09867	rRNA-processing protein efg1	AT1G04230.1	Protein of unknown function (DUF2361) 	LOC_Os03g58340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208182.1.S1_at	A	A1TS	POPTR_0008s16140	POPTR_0008s16140 (11)	scaffold_8:10787720-10790465(+) (11)	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117520.1	"zinc finger family protein {Arabid, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208183.1.S1_at	A	A1TS	POPTR_0008s16170	POPTR_0008s16170 (11)	scaffold_8:10806880-10807954(+) (11)	NA	Q9FIX5	Transcription factor bHLH92	AT5G43650.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g53020.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.208184.1.S1_s_at	A	A2TS	POPTR_0008s16200	POPTR_0008s16200 (11)//POPTR_0008s16240 (10)	scaffold_8:10843381-10843835(-) (11)//scaffold_8:10866632-10867086(-) (10)	NA	NA	NA	AT5G43630.1	zinc knuckle (CCHC-type) family protein 	NA	NA	Medtr5g007190.1	"Zinc finger, CCHC-type; Plus-3 "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.208186.1.S1_at	A	A1TS	POPTR_0008s16260	POPTR_0008s16260 (11)	scaffold_8:10890557-10890692(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208187.1.S1_at	A	A1TS	POPTR_0008s16330	POPTR_0008s16330 (11)	scaffold_8:10942635-10943026(-) (11)	NA	Q86134	Nucleoprotein	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208188.1.S1_at	A	A1TS	POPTR_0008s16360	POPTR_0008s16360 (11)	scaffold_8:10962019-10962319(+) (11)	NA	O23305	FHA domain-containing protein At4g14490	AT4G14490.1	SMAD/FHA domain-containing protein  	LOC_Os03g51870.1	"FHA domain containing protein, putative, expressed"	Medtr8g081680.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208189.1.S1_at	A	A1TS	POPTR_0008s16380	POPTR_0008s16380 (11)	scaffold_8:10968281-10968850(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT4G14480.1	Protein kinase superfamily protein 	LOC_Os03g47470.1	"STE_PAK_Ste20_STLK.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr2g121220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208190.1.S1_at	A	A1TS	POPTR_0008s16390	POPTR_0008s16390 (11)	scaffold_8:10974661-10975137(+) (11)	NA	Q38895	Transcriptional regulator SUPERMAN	AT3G23130.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g20930.1	"ZOS5-07 - C2H2 zinc finger protein, expressed"	Medtr2g091860.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208191.1.S1_at	A	A1TS	POPTR_0008s16410	POPTR_0008s16410 (11)	scaffold_8:10990733-10991225(+) (11)	NA	NA	NA	AT5G43540.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g14130.1	ZOS5-05 - C2H2 zinc finger protein	Medtr1g090030.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208192.1.S1_at	A	A1TS	POPTR_0008s16420	POPTR_0008s16420 (11)	scaffold_8:11000957-11002143(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208193.1.S1_at	A	A1TS	POPTR_0008s16430	POPTR_0008s16430 (9)	scaffold_8:11008742-11008810(+) (11)	NA	Q0WPQ2	Ethylene receptor 2	AT3G23150.1	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os04g08740.2	"ethylene receptor, putative, expressed"	Medtr1g093360.1	"Tripartite hybrid signal transduction histidine kinase, BarA type; Bacteriophytochrome "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.208193.1.S1_s_at	A	A1TS	POPTR_0008s16430	POPTR_0008s16430 (11)	scaffold_8:11008325-11008722(+) (11)	NA	Q0WPQ2	Ethylene receptor 2	AT3G23150.1	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os04g08740.2	"ethylene receptor, putative, expressed"	Medtr1g093360.1	"Tripartite hybrid signal transduction histidine kinase, BarA type; Bacteriophytochrome "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.208194.1.S1_at	A	A1TS	POPTR_0008s16450	POPTR_0008s16450 (11)	scaffold_8:11032697-11034150(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208196.1.S1_at	A	A1MS	POPTR_0008s16650	POPTR_0008s16650 (10)	scaffold_8:11191895-11193363(-) (10)	NA	Q96524	Cryptochrome-2	AT1G04400.1	cryptochrome 2 	LOC_Os02g41550.3	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr1g042700.1	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.208197.1.S1_s_at	A	A1TS	POPTR_0008s16680	POPTR_0008s16680 (11)	scaffold_8:11220426-11220895(-) (11)	NA	NA	NA	AT4G14380.1	unknown protein; Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	Medtr1g043010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208198.1.S1_at	A	A1TS	POPTR_0008s16720	POPTR_0008s16720 (11)	scaffold_8:11241610-11243245(+) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT4G14368.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os05g46740.2	"regulator of chromosome condensation, putative, expressed"	Medtr7g077830.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208199.1.S1_at	A	A1TS	POPTR_0008s16800	POPTR_0008s16800 (11)	scaffold_8:11303645-11304177(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208200.1.S1_at	A	A1TS	POPTR_0008s16820	POPTR_0008s16820 (11)	scaffold_8:11319944-11321278(-) (11)	NA	Q9LW60	Putative protein phosphatase 2C-like protein 44	AT3G23360.1	Protein phosphatase 2C family protein 	LOC_Os07g32380.1	"protein phosphatase 2C, putative, expressed"	Medtr2g093230.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208201.1.S1_at	A	A1TS	POPTR_0008s16830	POPTR_0008s16830 (11)	scaffold_8:11324931-11325298(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208202.1.S1_at	A	A1TS	POPTR_0008s16850	POPTR_0008s16850 (11)	scaffold_8:11331809-11332174(+) (11)	NA	Q9QY93	dCTP pyrophosphatase 1	AT3G25400.1	"CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). "	LOC_Os04g43550.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	Medtr7g046000.1	MazG nucleotide pyrophosphohydrolase; Pyrophosphohydrolase MazG RS21-C6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208203.1.S1_at	A	A1TS	POPTR_0008s16870	POPTR_0008s16870 (11)	scaffold_8:11340425-11341047(+) (11)	NA	NA	NA	AT1G04450.1	ROP-interactive CRIB motif-containing protein 3 	LOC_Os04g53580.1	"P21-Rho-binding domain containing protein, putative, expressed"	Medtr2g093180.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208204.1.S1_at	A	A1TS	POPTR_0008s16880	POPTR_0008s16880 (11)	scaffold_8:11342416-11343129(-) (11)	NA	Q07970	Kinesin-1	AT4G14330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g56540.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g090250.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.208206.1.S1_at	A	A1TS	POPTR_0008s16960	POPTR_0008s16960 (10)	scaffold_8:11401336-11401816(+) (10)	NA	NA	NA	AT3G07300.2	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os10g25320.3	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208206.1.S1_s_at	A	A1TS	POPTR_0008s16960	POPTR_0008s16960 (11)	scaffold_8:11401819-11401962(+) (11)	NA	NA	NA	AT3G07300.2	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os10g25320.3	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208206.1.S1_x_at	A	A1TS	POPTR_0008s16960	POPTR_0008s16960 (9)	scaffold_8:11401338-11401963(+) (9)	NA	NA	NA	AT3G07300.2	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os10g25320.3	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208207.1.S1_at	A	A1TS	POPTR_0008s16990	POPTR_0008s16990 (11)	scaffold_8:11427787-11428344(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208208.1.S1_at	A	A1TS	POPTR_0008s17000	POPTR_0008s17000 (11)	scaffold_8:11435230-11435674(+) (11)	NA	Q9FNL7	Peptide transporter PTR3-A	AT5G46050.1	peptide transporter 3 	LOC_Os10g33210.1	"peptide transporter PTR3-A, putative, expressed"	Medtr1g090040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.208209.1.S1_at	A	A1TS	POPTR_0008s17070	POPTR_0008s17070 (11)	scaffold_8:11478230-11479717(+) (11)	NA	Q9VIM5	Probable actin-related protein 2/3 complex subunit 2	AT2G33385.2	actin-related protein C2B 	LOC_Os04g43290.1	"ARPC2B, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.208209.1.S1_x_at	A	A1TS	POPTR_0008s17070	POPTR_0008s17070 (11)	scaffold_8:11478230-11479717(+) (11)	NA	Q9VIM5	Probable actin-related protein 2/3 complex subunit 2	AT2G33385.2	actin-related protein C2B 	LOC_Os04g43290.1	"ARPC2B, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.208210.1.S1_at	A	A1TS	POPTR_0008s17080	POPTR_0008s17080 (11)	scaffold_8:11484163-11484650(-) (11)	NA	NA	NA	AT5G13890.3	Family of unknown function (DUF716)  	NA	NA	Medtr1g065150.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208210.1.S1_x_at	A	A1TS	POPTR_0008s17080	POPTR_0008s17080 (11)	scaffold_8:11484115-11484650(-) (11)	NA	NA	NA	AT5G13890.3	Family of unknown function (DUF716)  	NA	NA	Medtr1g065150.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208212.1.S1_at	A	A1TS	POPTR_0008s17090	POPTR_0008s17090 (11)	scaffold_8:11488267-11488610(+) (11)	NA	Q9SL05	"Protein PROTON GRADIENT REGULATION 5, chloroplastic"	AT2G05620.1	proton gradient regulation 5 	LOC_Os08g45190.1	"PGR5, putative, expressed"	Medtr1g065260.1	"Protein PROTON GRADIENT REGULATION 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208212.1.S1_x_at	A	A1TS	POPTR_0008s17090	POPTR_0008s17090 (9)	scaffold_8:11488267-11488620(+) (9)	NA	Q9SL05	"Protein PROTON GRADIENT REGULATION 5, chloroplastic"	AT2G05620.1	proton gradient regulation 5 	LOC_Os08g45190.1	"PGR5, putative, expressed"	Medtr1g065260.1	"Protein PROTON GRADIENT REGULATION 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208213.1.S1_at	A	A1TS	POPTR_0008s17130	POPTR_0008s17130 (11)	scaffold_8:11509762-11509981(-) (11)	NA	NA	NA	AT1G04500.1	CCT motif family protein 	LOC_Os10g32900.1	"CCT motif family protein, expressed"	Medtr1g065110.1	"zinc finger CONSTANS-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208214.1.S1_at	A	A1TS	POPTR_0008s17130	POPTR_0008s17130 (11)	scaffold_8:11511015-11511640(-) (11)	NA	NA	NA	AT1G04500.1	CCT motif family protein 	LOC_Os10g32900.1	"CCT motif family protein, expressed"	Medtr1g065110.1	"zinc finger CONSTANS-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208215.1.S1_at	A	A1TS	POPTR_0008s17160	POPTR_0008s17160 (10)	scaffold_8:11532407-11532568(-) (10)	NA	Q9FNC9	Mitochondrial import receptor subunit TOM22 homolog 2	AT5G43970.1	translocase of outer membrane 22-V 	LOC_Os02g03880.1	hypothetical protein	Medtr1g065560.1	"Mitochondrial import translocase, subunit Tom22 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208216.1.S1_at	A	A1TS	POPTR_0008s17170	POPTR_0008s17170 (11)	scaffold_8:11533148-11533218(-) (11)	NA	NA	NA	AT4G13330.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g43164.1	expressed protein	Medtr4g133810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208216.1.S1_s_at	A	A1TS	POPTR_0008s17170	POPTR_0008s17170 (11)	scaffold_8:11533219-11533508(-) (11)	NA	NA	NA	AT4G13330.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g43164.1	expressed protein	Medtr4g133810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208217.1.S1_at	A	A1TS	POPTR_0008s17200	POPTR_0008s17200 (10)	scaffold_8:11552533-11553122(-) (10)	NA	NA	NA	AT1G04530.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04710.1	expressed protein	Medtr1g087320.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208218.1.S1_at	A	A1TS	POPTR_0008s17210	POPTR_0008s17210 (11)	scaffold_8:11560638-11561201(+) (11)	NA	NA	NA	AT2G33320.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g57000.1	"C2 domain containing protein, putative, expressed"	Medtr1g065790.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208219.1.S1_at	A	A1TS	POPTR_0008s17220	POPTR_0008s17220 (11)	scaffold_8:11569889-11570033(+) (11)	NA	Q38831	Auxin-responsive protein IAA13	AT2G33310.3	auxin-induced protein 13 	LOC_Os02g57250.2	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr4g159330.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.208219.1.S1_x_at	A	A1TS	POPTR_0008s17220	POPTR_0008s17220 (11)	scaffold_8:11569889-11570461(+) (11)	NA	Q38831	Auxin-responsive protein IAA13	AT2G33310.3	auxin-induced protein 13 	LOC_Os02g57250.2	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr4g159330.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.208222.1.S1_at	A	A1TS	POPTR_0008s17350	POPTR_0008s17350 (10)	scaffold_8:11643738-11644405(+) (10)	NA	Q4JL84	Transcription factor MYB59	AT4G13480.1	myb domain protein 79 	LOC_Os02g40530.1	"MYB family transcription factor, putative, expressed"	Medtr1g065650.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208224.1.S1_at	A	A1TS	POPTR_0008s17360	POPTR_0008s17360 (11)	scaffold_8:11651470-11652002(+) (11)	NA	Q9SN39	"Pentatricopeptide repeat-containing protein At4g18750, chloroplastic"	AT4G18750.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g25500.1	"pentatricopeptide, putative, expressed"	Medtr1g087400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208225.1.S1_at	A	A1TS	POPTR_0008s17370	POPTR_0008s17370 (11)	scaffold_8:11653893-11654473(-) (11)	NA	NA	NA	AT1G04570.1	Major facilitator superfamily protein 	LOC_Os07g24230.1	"integral membrane transporter family protein, putative, expressed"	Medtr3g009870.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208226.1.S1_at	A	A1TS	POPTR_0008s17380	POPTR_0008s17380 (11)	scaffold_8:11658945-11660350(+) (11)	NA	A3AVH5	DEAD-box ATP-dependent RNA helicase 13	AT3G16840.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g43140.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC146793_7.1	"Helicase, C-terminal; ; AC146793.7 35969-26139 F EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208227.1.S1_at	A	A1TS	POPTR_0008s17390	POPTR_0008s17390 (11)	scaffold_8:11670984-11671385(+) (11)	NA	P54144	Ammonium transporter 1 member 1	AT4G13510.1	ammonium transporter 1;1 	LOC_Os04g43070.1	"ammonium transporter protein, putative, expressed"	Medtr1g065600.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.208228.1.S1_at	A	A1TS	POPTR_0008s17430	POPTR_0008s17430 (11)	scaffold_8:11698418-11699202(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g43030.1	"lipase class 3 family protein, putative, expressed"	Medtr1g065970.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208229.1.S1_at	A	A1TS	POPTR_0008s17450	POPTR_0008s17450 (11)	scaffold_8:11705273-11706415(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208230.1.S1_at	A	A1TS	POPTR_0008s17460	POPTR_0008s17460 (11)	scaffold_8:11733190-11736546(+) (11)	NA	P54697	Myosin-J heavy chain	AT5G43900.3	myosin 2 	LOC_Os02g34080.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.208231.1.S1_at	A	A1TS	POPTR_0008s17470	POPTR_0008s17470 (11)	scaffold_8:11750219-11751267(+) (11)	NA	O23024	Flavin-containing monooxygenase YUCCA3	AT1G04610.1	YUCCA 3 	LOC_Os04g03980.1	"flavin monooxygenase, putative, expressed"	Medtr7g117800.1	"Monooxygenase, FAD-binding; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208232.1.S1_at	A	A1TS	POPTR_0008s17480	POPTR_0008s17480 (11)	scaffold_8:11753182-11753624(-) (11)	NA	NA	NA	AT1G04620.1	"coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family "	LOC_Os04g25400.2	"uncharacterized protein all1601, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208234.1.S1_at	A	A1TS	POPTR_0008s17530	POPTR_0008s17530 (11)	scaffold_8:11802490-11804029(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g07520.1	"OsFBX217 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208235.1.S1_at	A	A1TS	POPTR_0008s17550	POPTR_0008s17550 (10)	scaffold_8:11816576-11818116(+) (10)	POPTR_0010s07030 (6)	Q6UPR8	Endoplasmic reticulum metallopeptidase 1	AT1G67420.2	Zn-dependent exopeptidases superfamily protein 	LOC_Os07g19530.1	"peptidase, putative, expressed"	Medtr1g120840.1	ArgE/dapE/ACY1/CPG2/yscS; Peptidase M28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.208236.1.S1_at	A	A1TS	POPTR_0008s17610	POPTR_0008s17610 (11)	scaffold_8:11851262-11852304(-) (11)	NA	Q13724	Mannosyl-oligosaccharide glucosidase	AT1G67490.2	glucosidase 1 	LOC_Os01g69210.1	"mannosyl-oligosaccharide glucosidase, putative, expressed"	AC233656_18.1	"Glycoside hydrolase, family 63 AC233656.1 66442-60977 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208237.1.S1_at	A	A1TS	POPTR_0008s17640	POPTR_0008s17640 (11)	scaffold_8:11859773-11860109(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208238.1.S1_at	A	A1TS	POPTR_0008s17720	POPTR_0008s17720 (11)	scaffold_8:11912473-11913073(-) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT3G50940.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr5g020890.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.208239.1.S1_at	A	A1TS	POPTR_0008s17730	POPTR_0008s17730 (11)	scaffold_8:11916986-11917512(-) (11)	NA	NA	NA	AT1G67540.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208240.1.S1_at	A	A1MS	POPTR_0008s17740	POPTR_0008s17740 (11)	scaffold_8:11922199-11922914(+) (11)	NA	NA	NA	AT3G57810.3	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr3g103530.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208241.1.S1_s_at	A	A1TS	POPTR_0008s17750	POPTR_0008s17750 (11)	scaffold_8:11924818-11925509(-) (11)	NA	NA	NA	AT5G43230.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01810.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g39490.3	expressed protein	Medtr1g090380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208242.1.S1_at	A	A1TS	POPTR_0008s17750	POPTR_0008s17750 (11)	scaffold_8:11929262-11929772(-) (11)	NA	NA	NA	AT5G43230.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01810.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g39490.3	expressed protein	Medtr1g090380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208243.1.S1_at	A	A1TS	POPTR_0008s17780	POPTR_0008s17780 (10)	scaffold_8:11934825-11935121(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208244.1.S1_at	A	A1TS	POPTR_0008s17800	POPTR_0008s17800 (11)	scaffold_8:11950961-11952171(+) (11)	NA	P07374	Urease	AT1G67550.1	urease 	NA	NA	Medtr3g103500.1	"Urease, beta subunit; TonB box, N-terminal; Urease alpha-subunit, N-terminal "	GO:0019627|urea metabolic process||GO:0044281|small molecule metabolic process	GO:0009039|urease activity||GO:0016151|nickel ion binding	NA
PtpAffx.208245.1.S1_at	A	A1TS	POPTR_0008s17850	POPTR_0008s17850 (10)	scaffold_8:11984878-11986182(-) (11)	NA	NA	NA	AT1G67590.1	Remorin family protein 	LOC_Os03g02840.1	"remorin family protein, putative, expressed"	Medtr1g024260.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208246.1.S1_at	A	A1TS	POPTR_0008s17860	POPTR_0008s17860 (10)	scaffold_8:11997313-11998569(+) (10)	NA	P42534	Putative polyketide hydroxylase	AT1G24340.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os01g67550.1	"FAD binding domain containing protein, expressed"	Medtr3g103450.1	"Monooxygenase, FAD-binding "	GO:0055114|oxidation reduction	GO:0004497|monooxygenase activity	NA
PtpAffx.208247.1.S1_at	A	A1TS	POPTR_0008s17870	POPTR_0008s17870 (11)	scaffold_8:12006458-12007080(-) (11)	NA	NA	NA	AT1G27850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink). 	LOC_Os12g13670.2	expressed protein	Medtr3g103410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208248.1.S1_at	A	A1TS	POPTR_0008s17900	POPTR_0008s17900 (9)	scaffold_8:12022975-12023234(-) (11)	NA	NA	NA	AT1G67630.1	DNA polymerase alpha 2 	LOC_Os12g13950.1	"POLA2 - Putative DNA polymerase alpha complex subunit, expressed"	Medtr3g103320.1	DNA polymerase epsilon subunit B 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208249.1.S1_at	A	A1TS	POPTR_0008s17900	POPTR_0008s17900 (9)	scaffold_8:12024611-12025694(-) (11)	NA	NA	NA	AT1G67630.1	DNA polymerase alpha 2 	LOC_Os12g13950.1	"POLA2 - Putative DNA polymerase alpha complex subunit, expressed"	Medtr3g103320.1	DNA polymerase epsilon subunit B 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208250.1.S1_at	A	A1TS	POPTR_0008s17910	POPTR_0008s17910 (11)	scaffold_8:12026946-12027918(-) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.1	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208251.1.S1_at	A	A1TS	POPTR_0008s17920	POPTR_0008s17920 (11)	scaffold_8:12029966-12030243(-) (11)	NA	Q6GNY1	E3 ubiquitin-protein ligase mib1	AT3G01750.1	Ankyrin repeat family protein 	LOC_Os05g23320.2	expressed protein	Medtr3g103280.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208252.1.S1_at	A	A1TS	POPTR_0008s17930	POPTR_0008s17930 (11)	scaffold_8:12037828-12038311(-) (11)	NA	Q9M8W9	"Pentatricopeptide repeat-containing protein At3g04130, mitochondrial"	AT3G04130.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g38950.1	"PPR repeat containing protein, expressed"	Medtr1g149390.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208253.1.S1_at	A	A1TS	POPTR_0008s17960	POPTR_0008s17960 (11)	scaffold_8:12049342-12050349(-) (11)	NA	Q9LK64	ABC transporter C family member 3	AT3G13080.1	multidrug resistance-associated protein 3 	LOC_Os01g67580.1	"multidrug resistance-associated protein, putative, expressed"	Medtr5g034390.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.208254.1.S1_at	A	A1TS	POPTR_0008s18000	POPTR_0008s18000 (11)	scaffold_8:12081927-12082901(-) (11)	NA	Q9LU91	F-box protein SKIP14	AT3G26000.1	Ribonuclease inhibitor 	LOC_Os04g40910.1	"OsFBX146 - F-box domain containing protein, expressed"	Medtr4g157480.1	"4Fe-4S ferredoxin, iron-sulfur binding; Cyclin-like F-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208255.1.S1_s_at	A	A1TS	POPTR_0010s06440	POPTR_0010s06440 (11)	scaffold_10:7803180-7807151(-) (11)//scaffold_8:12096390-12103997(+) (11)	POPTR_0008s18020 (7)	Q9LU89	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os04g40860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.208256.1.S1_at	A	A1TS	POPTR_0008s18060	POPTR_0008s18060 (11)	scaffold_8:12109173-12109954(+) (11)	NA	NA	NA	AT1G50575.1	Putative lysine decarboxylase family protein 	LOC_Os03g39010.1	"possible lysine decarboxylase domain containing protein, expressed"	Medtr3g076920.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208257.1.S1_at	A	A1TS	POPTR_0008s18120	POPTR_0008s18120 (11)	scaffold_8:12141643-12143022(+) (11)	NA	NA	NA	AT3G26050.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os12g17530.1	expressed protein	Medtr3g103000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208258.1.S1_at	A	A1TS	POPTR_0008s18130	POPTR_0008s18130 (11)	scaffold_8:12145081-12145855(-) (11)	NA	Q9FXD6	Two-component response regulator ARR11	AT1G67710.1	response regulator 11 	LOC_Os01g67770.1	"two-component response regulator, putative, expressed"	Medtr3g102990.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.208259.1.S1_at	A	A1TS	POPTR_0008s18140	POPTR_0008s18140 (10)	scaffold_8:12150079-12150726(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208260.1.S1_at	A	A1TS	POPTR_0008s18150	POPTR_0008s18150 (11)	scaffold_8:12169404-12170122(+) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT1G67720.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	Medtr7g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.208261.1.S1_at	A	A1TS	POPTR_0008s18170	POPTR_0008s18170 (11)	scaffold_8:12177217-12179626(+) (11)	NA	NA	NA	AT3G26085.2	CAAX amino terminal protease family protein 	LOC_Os05g22930.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr4g138100.1	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.208262.1.S1_at	A	A1TS	POPTR_0008s18180	POPTR_0008s18180 (11)	scaffold_8:12184335-12186278(+) (11)	NA	NA	NA	AT3G26090.1	G-protein coupled receptors;GTPase activators 	NA	NA	Medtr3g102890.1	Regulator of G protein signalling 	NA	GO:0004871|signal transducer activity	NA
PtpAffx.208263.1.S1_s_at	A	A1TS	POPTR_0008s18190	POPTR_0008s18190 (11)	scaffold_8:12188660-12189025(+) (11)	NA	Q3SXM5	Inactive hydroxysteroid dehydrogenase-like protein 1	AT1G24470.1	beta-ketoacyl reductase 2 	LOC_Os04g40730.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g102850.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.208264.1.S1_at	A	A1TS	POPTR_0008s18190	POPTR_0008s18190 (9)	scaffold_8:12190887-12191275(+) (11)	NA	Q3SXM5	Inactive hydroxysteroid dehydrogenase-like protein 1	AT1G24470.1	beta-ketoacyl reductase 2 	LOC_Os04g40730.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g102850.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.208265.1.S1_at	A	A1TS	POPTR_0008s18240	POPTR_0008s18240 (11)	scaffold_8:12208742-12209880(+) (11)	NA	Q9FYL3	"ALBINO3-like protein 1, chloroplastic"	AT1G24490.1	OxaA/YidC-like membrane insertion protein 	LOC_Os03g62750.1	"inner membrane protein, putative, expressed"	Medtr3g102810.1	60 kDa inner membrane insertion protein 	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.208266.1.S1_s_at	A	A1TS	POPTR_0008s18250	POPTR_0008s18250 (11)	scaffold_8:12220842-12221314(+) (11)	NA	Q9FXD8	Probable pectate lyase 5	AT1G67750.1	Pectate lyase family protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208267.1.S1_at	A	A1TS	POPTR_0008s18270	POPTR_0008s18270 (11)	scaffold_8:12232878-12233157(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208268.1.S1_at	A	A1TS	POPTR_0008s18290	POPTR_0008s18290 (11)	scaffold_8:12245311-12247620(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208269.1.S1_at	A	A1TS	POPTR_0008s18330	POPTR_0008s18330 (11)	scaffold_8:12271280-12271907(-) (11)	NA	Q9NVU7	Protein SDA1 homolog	AT1G13160.1	ARM repeat superfamily protein 	LOC_Os04g53770.1	"SDA1, putative, expressed"	Medtr3g102700.1	"SDA1; Protein of unknown function, nucleolar NUC1303, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208270.1.S1_at	A	A1TS	POPTR_0008s18340	POPTR_0008s18340 (11)	scaffold_8:12297744-12298568(+) (11)	NA	O65001	Protein terminal ear1	AT3G26120.1	terminal EAR1-like 1 	LOC_Os01g68000.1	"AML1, putative, expressed"	Medtr3g102670.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.208271.1.S1_at	A	A1TS	POPTR_0008s18370	POPTR_0008s18370 (9)	scaffold_8:12337339-12337371(+) (9)	NA	Q9FMY1	Cytochrome P450 86B1	AT1G24540.1	"cytochrome P450, family 86, subfamily C, polypeptide 1 "	LOC_Os02g38290.2	"cytochrome P450, putative, expressed"	Medtr4g101000.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.208272.1.S1_at	A	A1TS	POPTR_0008s18410	POPTR_0008s18410 (11)	scaffold_8:12381930-12382382(+) (11)	NA	Q8RXG3	Mitogen-activated protein kinase kinase 5	AT1G18350.1	MAP kinase kinase 7 	LOC_Os03g50550.1	"STE_MEK_ste7_MAP2K.7 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr6g080600.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208273.1.S1_s_at	A	A1TS	POPTR_0008s18770	POPTR_0008s18770 (11)	scaffold_8:12797618-12797972(+) (11)	NA	Q5XVA8	Uncharacterized protein At3g49055	AT1G24560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species: Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source: NCBI BLink). 	LOC_Os09g39200.1	expressed protein	Medtr1g126850.1	"Uncharacterized protein At3g49055, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208274.1.S1_at	A	A1TS	POPTR_0008s18800	POPTR_0008s18800 (10)	scaffold_8:12832038-12832656(-) (10)	NA	NA	NA	AT3G26350.1	"LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). "	LOC_Os08g38580.1	"harpin-induced protein 1 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208275.1.S1_at	A	A1MS	POPTR_0008s18800	POPTR_0008s18800 (11)	scaffold_8:12832385-12832516(-) (11)	NA	NA	NA	AT3G26350.1	"LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). "	LOC_Os08g38580.1	"harpin-induced protein 1 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208277.1.S1_s_at	A	A1MS	POPTR_0017s09350	POPTR_0017s09350 (10)	scaffold_17:7965141-7965409(+) (10)//scaffold_8:12837998-12838267(+) (10)	NA	NA	NA	NA	NA	LOC_Os07g13350.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208279.1.S1_at	A	A2TS	POPTR_0008s18840	POPTR_0008s18840 (11)//POPTR_0008s18770 (10)	scaffold_8:12799742-12799889(+) (10)//scaffold_8:12869281-12869428(+) (11)	NA	Q5XVA8	Uncharacterized protein At3g49055	AT1G24560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species: Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source: NCBI BLink). 	LOC_Os09g39200.1	expressed protein	Medtr1g126850.1	"Uncharacterized protein At3g49055, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208280.1.S1_at	A	A1TS	POPTR_0008s18820	POPTR_0008s18820 (10)	scaffold_8:12858724-12859004(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208281.1.S1_at	A	A1TS	POPTR_0008s18880	POPTR_0008s18880 (11)	scaffold_8:12890530-12891101(-) (11)	NA	Q9SAD9	"Pentatricopeptide repeat-containing protein At1g13040, mitochondrial"	AT1G13040.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g48850.2	"PPR repeat containing protein, expressed"	Medtr4g155160.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208282.1.S1_at	A	A1TS	POPTR_0008s18900	POPTR_0008s18900 (11)	scaffold_8:12901093-12902152(-) (11)	NA	NA	NA	AT1G13030.1	sphere organelles protein-related 	LOC_Os12g19070.1	conserved hypothetical protein	Medtr3g102490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208284.1.S1_at	A	A1MS	POPTR_0008s18920	POPTR_0008s18920 (10)	scaffold_8:12915190-12916096(+) (11)	NA	Q9URZ0	Probable alpha-galactosidase	AT3G26380.1	Melibiase family protein 	LOC_Os01g33420.1	"glycosyl hydrolase family protein 27, putative, expressed"	Medtr3g102420.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208284.1.S1_x_at	A	A1MS	POPTR_0008s18920	POPTR_0008s18920 (9)	scaffold_8:12915181-12916096(+) (11)	NA	Q9URZ0	Probable alpha-galactosidase	AT3G26380.1	Melibiase family protein 	LOC_Os01g33420.1	"glycosyl hydrolase family protein 27, putative, expressed"	Medtr3g102420.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208286.1.S1_at	A	A1TS	POPTR_0008s18950	POPTR_0008s18950 (11)	scaffold_8:12935405-12936151(+) (11)	NA	Q9LIN2	GDSL esterase/lipase At3g26430	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.208287.1.S1_at	A	A1TS	POPTR_0008s19020	POPTR_0008s19020 (11)	scaffold_8:13005814-13006187(-) (11)	NA	NA	NA	AT1G67910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). 	NA	NA	Medtr8g081780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208288.1.S1_at	A	A1TS	POPTR_0008s19030	POPTR_0008s19030 (10)	scaffold_8:13017143-13017710(+) (10)	NA	Q9FYK5	Ethylene-responsive transcription factor ESR2	AT1G24590.1	DORNROSCHEN-like 	LOC_Os04g32790.1	"AP2 domain containing protein, expressed"	Medtr5g034230.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.208289.1.S1_at	A	A1TS	POPTR_0008s19070	POPTR_0008s19070 (11)	scaffold_8:13054031-13054534(+) (11)	NA	Q38954	"Inorganic phosphate transporter 2-1, chloroplastic"	AT3G26570.2	phosphate transporter 2;1 	LOC_Os02g38020.1	"inorganic phosphate transporter 2-1, chloroplast precursor, putative, expressed"	Medtr8g081830.1	Phosphate transporter 	GO:0006817|phosphate transport	GO:0005315|inorganic phosphate transmembrane transporter activity	GO:0016020|membrane
PtpAffx.208290.1.S1_at	A	A1TS	POPTR_0008s19080	POPTR_0008s19080 (11)	scaffold_8:13055609-13056112(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g081850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208291.1.S1_at	A	A1TS	POPTR_0008s19090	POPTR_0008s19090 (11)	scaffold_8:13056517-13056801(-) (11)	NA	Q54RP0	UDP-galactose:fucoside alpha-3-galactosyltransferase	AT1G70630.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os05g43810.1	conserved hypothetical protein	Medtr8g081860.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208294.1.S1_at	A	A1TS	POPTR_0008s19170	POPTR_0008s19170 (11)	scaffold_8:13137773-13139510(+) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT1G51940.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os01g36550.1	"protein kinase family protein, putative"	Medtr5g034850.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208295.1.S1_at	A	A1TS	POPTR_0008s19190	POPTR_0008s19190 (11)	scaffold_8:13149730-13150307(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028060.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.208297.1.S1_at	A	A1TS	POPTR_0008s19250	POPTR_0008s19250 (11)	scaffold_8:13216254-13216559(-) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT3G26610.1	Pectin lyase-like superfamily protein 	LOC_Os01g44970.1	"polygalacturonase, putative, expressed"	Medtr5g035000.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.208297.1.S1_s_at	A	A1TS	POPTR_0008s19250	POPTR_0008s19250 (11)	scaffold_8:13215616-13216219(-) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT3G26610.1	Pectin lyase-like superfamily protein 	LOC_Os01g44970.1	"polygalacturonase, putative, expressed"	Medtr5g035000.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.208298.1.S1_s_at	A	A1MS	POPTR_0008s19260	POPTR_0008s19260 (9)	scaffold_8:13221944-13222603(+) (10)	NA	Q9CAL3	Cysteine-rich receptor-like protein kinase 2	AT1G70520.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 2 	LOC_Os07g35280.1	"TKL_IRAK_DUF26-lc.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g035020.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208299.1.S1_at	A	A1TS	POPTR_0008s19330	POPTR_0008s19330 (10)	scaffold_8:13281069-13281924(+) (10)	NA	Q9LDT3	Axial regulator YABBY 4	AT1G23420.1	Plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr5g035320.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2083.1.S1_at	A	A1TS	POPTR_0010s24370	POPTR_0010s24370 (11)	scaffold_10:20615140-20615863(+) (11)	NA	O75351	Vacuolar protein sorting-associated protein 4B	AT2G27600.1	AAA-type ATPase family protein 	LOC_Os01g04814.1	"vacuolar protein sorting-associating protein 4B, putative, expressed"	Medtr4g069940.1	"AAA ATPase, central region; MIT "	NA	GO:0005524|ATP binding	NA
PtpAffx.208300.1.S1_at	A	A1TS	POPTR_0008s19340	POPTR_0008s19340 (11)	scaffold_8:13283936-13284607(-) (11)	NA	NA	NA	AT1G10657.3	Plant protein 1589 of unknown function 	LOC_Os05g38680.1	"plant-specific domain TIGR01589 family protein, expressed"	Medtr7g022750.1	Uncharacterized plant-specific domain 01589 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208301.1.S1_at	A	A1MS	POPTR_0008s19440	POPTR_0008s19440 (10)	scaffold_8:13392536-13393973(+) (10)	NA	Q74E53	Ribosomal RNA large subunit methyltransferase N	AT1G60230.1	Radical SAM superfamily protein 	LOC_Os01g45370.1	"radical SAM enzyme, putative, expressed"	Medtr5g087280.1	Conserved hypothetical protein 48; Radical SAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208302.1.S1_at	A	A1TS	POPTR_0008s19480	POPTR_0008s19480 (10)	scaffold_8:13416449-13417482(-) (11)	NA	NA	NA	AT1G59650.1	Protein of unknown function (DUF1336) 	LOC_Os03g48660.1	"DUF1336 domain containing protein, expressed"	Medtr5g038290.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208303.1.S1_at	A	A1TS	POPTR_0008s19490	POPTR_0008s19490 (11)	scaffold_8:13427817-13431570(-) (11)	NA	NA	NA	AT1G10417.1	Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens. 	NA	NA	Medtr5g038270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208304.1.S1_a_at	A	A1TS	POPTR_0008s19500	POPTR_0008s19500 (11)	scaffold_8:13442798-13442847(+) (11)//scaffold_8:13442834-13442883(+) (11)//scaffold_8:13442870-13442919(+) (11)//scaffold_8:13442906-13442955(+) (11)//scaffold_8:13442942-13442989(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208305.1.S1_at	A	A1MS	POPTR_0008s19530	POPTR_0008s19530 (10)	scaffold_8:13459955-13460768(+) (10)	NA	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.1	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.208305.1.S1_x_at	A	A1MS	POPTR_0008s19530	POPTR_0008s19530 (10)	scaffold_8:13459955-13460768(+) (10)	NA	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.1	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.208306.1.S1_at	A	A1TS	POPTR_0008s19540	POPTR_0008s19540 (11)	scaffold_8:13461228-13462067(-) (11)	NA	O22267	Histidine kinase CKI1	AT2G47430.1	Signal transduction histidine kinase 	LOC_Os06g08450.1	"histidine kinase, putative"	Medtr1g106850.1	Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.208307.1.S1_at	A	A1TS	POPTR_0008s19551	POPTR_0008s19551 (9)	scaffold_8:13466290-13466594(+) (11)	NA	Q9LZP3	"Pentatricopeptide repeat-containing protein At3g62470, mitochondrial"	AT3G62470.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g28720.1	"PPR repeat containing protein, expressed"	Medtr1g137270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208307.1.S1_x_at	A	A1TS	POPTR_0008s19551	POPTR_0008s19551 (10)	scaffold_8:13466299-13466598(+) (11)	NA	Q9LZP3	"Pentatricopeptide repeat-containing protein At3g62470, mitochondrial"	AT3G62470.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g28720.1	"PPR repeat containing protein, expressed"	Medtr1g137270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208308.1.S1_at	A	A1TS	POPTR_0008s19560	POPTR_0008s19560 (11)	scaffold_8:13487437-13488149(+) (11)	NA	Q9XIE6	Phospholipid-transporting ATPase 3	AT1G59820.1	aminophospholipid ATPase 3 	LOC_Os10g27220.1	"phospholipid-transporting ATPase 3, putative, expressed"	Medtr5g038220.1	"ATPase, E1-E2 type "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.208309.1.S1_at	A	A1TS	POPTR_0008s19570	POPTR_0008s19570 (9)	scaffold_8:13493722-13495141(+) (11)	NA	NA	NA	AT1G69970.2	CLAVATA3/ESR-RELATED 26 	NA	NA	Medtr5g038150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208310.1.S1_at	A	A1TS	POPTR_0008s19610	POPTR_0008s19610 (11)	scaffold_8:13509302-13509561(-) (11)	NA	Q869R9	Myb-like protein J	AT1G70000.2	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr5g038100.1	"Zinc finger, CCHC-type; Homeodomain-related "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.208311.1.S1_s_at	A	A1TS	POPTR_0008s19630	POPTR_0008s19630 (11)	scaffold_8:13522405-13522902(-) (11)	NA	NA	NA	AT1G27200.1	Domain of unknown function (DUF23) 	LOC_Os08g02850.1	"zinc finger family protein, putative, expressed"	Medtr5g038040.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208312.1.S1_at	A	A1TS	POPTR_0008s19640	POPTR_0008s19640 (11)	scaffold_8:13527460-13528492(-) (11)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT1G27210.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208313.1.S1_at	A	A1TS	POPTR_0008s19660	POPTR_0008s19660 (11)	scaffold_8:13565082-13565434(+) (11)	POPTR_0010s04810 (6)	NA	NA	AT1G23790.1	Plant protein of unknown function (DUF936) 	LOC_Os01g01890.1	expressed protein	Medtr5g035680.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208314.1.S1_at	A	A1MS	POPTR_0008s19670	POPTR_0008s19670 (11)	scaffold_8:13566626-13567123(-) (11)	NA	B9DFG3	"DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic"	AT1G70070.1	"DEAD/DEAH box helicase, putative "	LOC_Os02g50560.1	"DSHCT domain containing protein, expressed"	Medtr5g037740.1	"ATP-requiring DNA helicase RecQ; DSH, C-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208315.1.S1_at	A	A1TS	POPTR_0008s19690	POPTR_0008s19690 (11)	scaffold_8:13582574-13582939(+) (11)	NA	O04536	Probable galacturonosyltransferase-like 9	AT1G70090.2	glucosyl transferase family 8 	LOC_Os02g50600.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr5g037690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.208316.1.S1_at	A	A1TS	POPTR_0008s19700	POPTR_0008s19700 (11)	scaffold_8:13588468-13590110(+) (11)	NA	Q9FEF8	rRNA 2'-O-methyltransferase fibrillarin 1	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.208318.1.S1_s_at	A	A1TS	POPTR_0008s19720	POPTR_0008s19720 (11)	scaffold_8:13599953-13600454(-) (11)	NA	O04532	Formin-like protein 8	AT1G70140.1	formin 8 	LOC_Os02g50570.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g073910.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208319.1.S1_at	A	A1TS	POPTR_0008s19740	POPTR_0008s19740 (11)	scaffold_8:13614187-13614892(-) (11)	NA	Q7G764	Probable NAD(P)H-dependent oxidoreductase 1	AT1G59960.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os03g13390.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g097770.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.208320.1.S1_at	A	A1TS	POPTR_0008s19770	POPTR_0008s19770 (11)	scaffold_8:13637805-13638069(+) (11)	NA	NA	NA	AT1G70180.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g39090.1	"SAM domain containing protein, putative, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208321.1.S1_at	A	A1TS	POPTR_0008s19790	POPTR_0008s19790 (11)	scaffold_8:13655129-13655309(+) (11)	NA	Q8VXV4	Chaperone protein dnaJ 16	AT1G24120.1	ARG1-like 1 	LOC_Os02g50760.2	"heat shock protein DnaJ, putative, expressed"	Medtr5g036860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.208324.1.S1_at	A	A1TS	POPTR_0008s19830	POPTR_0008s19830 (11)	scaffold_8:13683066-13684121(-) (11)	NA	Q944S1	DEAD-box ATP-dependent RNA helicase 22	AT1G59990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os09g21520.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g074020.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.208325.1.S1_at	A	A1TS	POPTR_0008s19890	POPTR_0008s19890 (11)	scaffold_8:13727949-13730293(-) (11)	NA	NA	NA	AT1G27070.1	5'-AMP-activated protein kinase-related 	LOC_Os03g48170.1	"5-AMP-activated protein kinase-related, putative, expressed"	Medtr5g039250.1	"Glycoside hydrolase, family 13, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208326.1.S1_at	A	A1TS	POPTR_0008s19900	POPTR_0008s19900 (11)	scaffold_8:13738493-13739082(-) (11)	NA	Q02283	Homeobox-leucine zipper protein HAT5	AT3G01470.1	homeobox 1 	LOC_Os02g49700.3	"homeobox associated leucine zipper, putative, expressed"	Medtr5g039350.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.208328.1.S1_at	A	A1TS	POPTR_0008s19910	POPTR_0008s19910 (11)	scaffold_8:13760373-13760639(+) (11)	NA	NA	NA	AT3G17900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g05812.3	expressed protein	Medtr5g039480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208329.1.S1_at	A	A1TS	POPTR_0008s19920	POPTR_0008s19920 (11)	scaffold_8:13768576-13768622(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208331.1.S1_at	A	A1TS	POPTR_0008s19980	POPTR_0008s19980 (11)	scaffold_8:13811050-13811450(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g35060.3	expressed protein	Medtr4g142730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208331.1.S1_x_at	A	A1TS	POPTR_0008s19980	POPTR_0008s19980 (11)	scaffold_8:13811043-13814217(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g35060.3	expressed protein	Medtr4g142730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208333.1.S1_at	A	A1TS	POPTR_0008s20000	POPTR_0008s20000 (11)	scaffold_8:13816905-13817899(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208334.1.S1_at	A	A1TS	POPTR_0008s20010	POPTR_0008s20010 (11)	scaffold_8:13819387-13821543(-) (11)	NA	Q9SSE7	"Arogenate dehydratase/prephenate dehydratase 2, chloroplastic"	AT3G07630.2	arogenate dehydratase 2 	LOC_Os07g49390.1	"P-protein, putative, expressed"	Medtr4g080180.1	Prephenate dehydratase with ACT region 	GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0004664|prephenate dehydratase activity	NA
PtpAffx.208335.1.S1_at	A	A1TS	POPTR_0008s20020	POPTR_0008s20020 (9)	scaffold_8:13825746-13825996(+) (11)	NA	P52414	"Acyl carrier protein 4, chloroplastic"	AT5G27200.1	acyl carrier protein 5 	LOC_Os12g34890.1	"acyl carrier protein, putative, expressed"	Medtr2g025430.1	Acyl carrier protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208336.1.S1_at	A	A1TS	POPTR_0008s20030	POPTR_0008s20030 (11)	scaffold_8:13830329-13831128(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208337.1.S1_at	A	A1MS	POPTR_0008s20050	POPTR_0008s20050 (11)	scaffold_8:13851467-13851987(+) (11)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208338.1.S1_at	A	A1MS	POPTR_0008s20050	POPTR_0008s20050 (11)	scaffold_8:13853058-13853405(+) (11)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208339.1.S1_at	A	A1TS	POPTR_0008s20050	POPTR_0008s20050 (10)	scaffold_8:13854884-13855523(+) (10)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208341.1.S1_at	A	A1TS	POPTR_0008s20070	POPTR_0008s20070 (10)	scaffold_8:13875788-13876249(+) (11)	NA	NA	NA	AT5G18750.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os06g34440.1	"dnaJ domain containing protein, expressed"	Medtr2g025500.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.208342.1.S1_x_at	A	A1MS	POPTR_0008s20060	POPTR_0008s20060 (9)	scaffold_8:13870856-13871559(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.208343.1.S1_at	A	A1TS	POPTR_0008s20170	POPTR_0008s20170 (11)	scaffold_8:13967287-13968053(+) (11)	NA	Q8LBI9	Sugar transporter ERD6-like 16	AT5G18840.1	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr8g139840.1	General substrate transporter; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208344.1.S1_s_at	A	A1TS	POPTR_0008s20210	POPTR_0008s20210 (11)	scaffold_8:14000806-14001448(+) (11)	NA	B1KHA5	Pyrimidine-specific ribonucleoside hydrolase rihA	AT5G18860.1	inosine-uridine preferring nucleoside hydrolase family protein 	LOC_Os05g33644.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr8g139860.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208345.1.S1_s_at	A	A1TS	POPTR_0008s20240	POPTR_0008s20240 (11)	scaffold_8:14013307-14013626(-) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G18910.1	Protein kinase superfamily protein 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr1g098870.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208346.1.S1_s_at	A	A1TS	POPTR_0008s20210	POPTR_0008s20210 (11)	scaffold_8:13998804-13999453(+) (11)	NA	B1KHA5	Pyrimidine-specific ribonucleoside hydrolase rihA	AT5G18860.1	inosine-uridine preferring nucleoside hydrolase family protein 	LOC_Os05g33644.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr8g139860.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208347.1.S1_at	A	A1TS	POPTR_0008s20260	POPTR_0008s20260 (11)	scaffold_8:14035606-14036276(-) (11)	NA	NA	NA	AT3G21530.1	DNAse I-like superfamily protein 	LOC_Os07g45100.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr2g025950.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208348.1.S1_at	A	A1TS	POPTR_0008s20280	POPTR_0008s20280 (11)	scaffold_8:14043864-14045551(-) (11)	NA	Q0WPJ7	Putative E3 ubiquitin-protein ligase RF298	AT4G03000.2	RING/U-box superfamily protein 	LOC_Os05g04950.2	"protein binding protein, putative, expressed"	Medtr2g025960.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208349.1.S1_at	A	A1TS	POPTR_0008s20290	POPTR_0008s20290 (11)	scaffold_8:14051828-14052263(+) (11)	NA	NA	NA	AT5G18920.1	Cox19-like CHCH family protein 	NA	NA	Medtr2g026000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208350.1.S1_at	A	A1TS	POPTR_0008s20320	POPTR_0008s20320 (11)	scaffold_8:14072098-14073537(-) (11)	NA	Q7XJ53	Probable protein phosphatase 2C 35	AT3G06270.1	Protein phosphatase 2C family protein 	LOC_Os02g17970.2	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g026070.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208350.1.S1_x_at	A	A1TS	POPTR_0008s20320	POPTR_0008s20320 (11)	scaffold_8:14072084-14073537(-) (11)	NA	Q7XJ53	Probable protein phosphatase 2C 35	AT3G06270.1	Protein phosphatase 2C family protein 	LOC_Os02g17970.2	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g026070.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208351.1.S1_at	A	A1TS	POPTR_0008s20350	POPTR_0008s20350 (10)	scaffold_8:14135703-14136405(-) (10)	NA	A2BIJ3	BSD domain-containing protein 1	AT4G13110.1	BSD domain-containing protein 	LOC_Os01g16670.1	"BSD domain-containing protein, putative, expressed"	Medtr2g026150.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208352.1.S1_at	A	A1TS	POPTR_0008s20360	POPTR_0008s20360 (11)	scaffold_8:14144116-14144687(-) (11)	NA	A2BIJ3	BSD domain-containing protein 1	AT4G13110.1	BSD domain-containing protein 	LOC_Os01g16670.1	"BSD domain-containing protein, putative, expressed"	Medtr2g026150.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208352.1.S1_x_at	A	A1TS	POPTR_0008s20360	POPTR_0008s20360 (11)	scaffold_8:14144098-14144871(-) (11)	NA	A2BIJ3	BSD domain-containing protein 1	AT4G13110.1	BSD domain-containing protein 	LOC_Os01g16670.1	"BSD domain-containing protein, putative, expressed"	Medtr2g026150.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208354.1.S1_at	A	A1TS	POPTR_0008s20430	POPTR_0008s20430 (11)	scaffold_8:14186918-14187426(-) (11)	NA	Q9LIR8	F-box/kelch-repeat protein At3g23880	AT3G23880.1	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr2g026270.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208356.1.S1_at	A	A1TS	POPTR_0008s20470	POPTR_0008s20470 (11)	scaffold_8:14239448-14240465(+) (11)	NA	NA	NA	AT5G18970.1	AWPM-19-like family protein 	LOC_Os05g33220.1	"AWPM-19-like membrane family protein, putative, expressed"	Medtr6g084000.1	AWPM-19-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208357.1.S1_at	A	A1TS	POPTR_0008s20490	POPTR_0008s20490 (11)	scaffold_8:14253207-14253307(-) (11)	NA	NA	NA	AT5G18980.1	ARM repeat superfamily protein 	LOC_Os03g24730.1	expressed protein	Medtr2g026440.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208357.1.S1_x_at	A	A1TS	POPTR_0008s20490	POPTR_0008s20490 (11)	scaffold_8:14252721-14253307(-) (11)	NA	NA	NA	AT5G18980.1	ARM repeat superfamily protein 	LOC_Os03g24730.1	expressed protein	Medtr2g026440.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208358.1.S1_at	A	A1TS	POPTR_0008s20550	POPTR_0008s20550 (11)	scaffold_8:14321977-14322266(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g49510.1	"zinc knuckle family protein, putative, expressed"	Medtr2g047090.1	"zinc knuckle family protein, putative "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.208359.1.S1_at	A	A1MS	POPTR_0008s20570	POPTR_0008s20570 (9)	scaffold_8:14340493-14341217(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g14150.1	"transposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208360.1.S1_at	A	A1TS	POPTR_0008s20600	POPTR_0008s20600 (11)	scaffold_8:14363535-14363770(+) (11)	NA	P50651	Ribonucleoside-diphosphate reductase small chain A	AT3G23580.1	ribonucleotide reductase 2A 	LOC_Os06g14620.1	"ribonucleoside-diphosphate reductase small chain, putative, expressed"	NA	NA	GO:0009186|deoxyribonucleoside diphosphate metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0004748|ribonucleoside-diphosphate reductase activity	NA
PtpAffx.208360.1.S1_s_at	A	A1TS	POPTR_0008s20600	POPTR_0008s20600 (11)	scaffold_8:14364268-14365264(+) (11)	NA	P50651	Ribonucleoside-diphosphate reductase small chain A	AT3G23580.1	ribonucleotide reductase 2A 	LOC_Os06g14620.1	"ribonucleoside-diphosphate reductase small chain, putative, expressed"	NA	NA	GO:0009186|deoxyribonucleoside diphosphate metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0004748|ribonucleoside-diphosphate reductase activity	NA
PtpAffx.208361.1.S1_at	A	A1TS	POPTR_0008s20630	POPTR_0008s20630 (11)	scaffold_8:14390502-14391698(-) (11)	NA	A7S4N4	Probable serine incorporator	AT3G06170.1	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os03g34300.1	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.208363.1.S1_s_at	A	A2TS	POPTR_0008s20670	POPTR_0008s20680 (11)//POPTR_0008s20670 (11)	scaffold_8:14573329-14573648(+) (11)//scaffold_8:14590903-14591222(+) (11)	NA	NA	NA	AT3G06150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g32960.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208365.1.S1_at	A	A1TS	POPTR_0008s20700	POPTR_0008s20700 (11)	scaffold_8:14607092-14607418(+) (11)	NA	Q7ZUL9	Probable E3 ubiquitin-protein ligase MGRN1	AT3G06140.1	RING/U-box superfamily protein 	LOC_Os10g13670.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208366.1.S1_at	A	A1TS	POPTR_0008s20710	POPTR_0008s20710 (11)	scaffold_8:14617551-14617814(+) (11)	NA	NA	NA	AT3G06130.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.208366.1.S1_s_at	A	A1TS	POPTR_0008s20710	POPTR_0008s20710 (11)	scaffold_8:14617804-14618098(+) (11)	NA	NA	NA	AT3G06130.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.208367.1.S1_at	A	A1TS	POPTR_0008s20720	POPTR_0008s20720 (11)	scaffold_8:14685264-14685867(-) (11)	NA	Q9M8K6	Transcription factor MUTE	AT3G06120.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g51820.1	"helix-loop-helix DNA-binding protein, putative"	Medtr3g124650.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.208368.1.S1_at	A	A1TS	POPTR_0008s20750	POPTR_0008s20750 (11)	scaffold_8:14729667-14731165(+) (11)	NA	Q8LAI1	Probable aquaporin NIP7-1	AT3G06100.1	NOD26-like intrinsic protein 7;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr2g021460.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.208369.1.S1_at	A	A1TS	POPTR_0022s00400	POPTR_0022s00400 (10)	scaffold_22:117043-117081(-) (10)	NA	Q8LAH7	12-oxophytodienoate reductase 1	AT1G76680.1	12-oxophytodienoate reductase 1 	LOC_Os06g11240.1	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006880.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.208370.1.S1_at	A	A1TS	POPTR_0008s20840	POPTR_0008s20840 (10)	scaffold_8:14847497-14849666(+) (11)	NA	NA	NA	AT5G19160.1	TRICHOME BIREFRINGENCE-LIKE 11 	LOC_Os12g05080.1	"PMR5, putative, expressed"	Medtr7g133010.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208371.1.S1_at	A	A1TS	POPTR_0008s20880	POPTR_0008s20880 (11)	scaffold_8:14894350-14894886(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208372.1.S1_at	A	A1TS	POPTR_0008s20890	POPTR_0008s20890 (11)	scaffold_8:14896186-14899379(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G54610.3	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr2g025330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208373.1.S1_at	A	A1TS	POPTR_0008s20900	POPTR_0008s20900 (11)	scaffold_8:14928393-14928946(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g09990.1	"retrotransposon protein, putative, unclassified"	Medtr3g061750.1	"polyprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208374.1.S1_at	A	A1TS	POPTR_0008s20910	POPTR_0008s20910 (11)	scaffold_8:14937986-14939249(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208375.1.S1_at	A	A1TS	POPTR_0008s20970	POPTR_0008s20970 (11)	scaffold_8:15016176-15016320(-) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.208376.1.S1_at	A	A1TS	POPTR_0008s21000	POPTR_0008s21000 (10)	scaffold_8:15055717-15056156(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208377.1.S1_at	A	A1TS	POPTR_0008s21030	POPTR_0008s21030 (11)	scaffold_8:15090450-15090990(+) (11)	NA	Q8RWY3	Putative chromatin-remodeling complex ATPase chain	AT3G06400.2	chromatin-remodeling protein 11 	LOC_Os01g27040.1	"chromatin-remodeling complex ATPase chain, putative, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	GO:0043044|ATP-dependent chromatin remodeling	GO:0031491|nucleosome binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0016585|chromatin remodeling complex
PtpAffx.208377.1.S1_x_at	A	A1TS	POPTR_0008s21030	POPTR_0008s21030 (11)	scaffold_8:15090435-15090990(+) (11)	NA	Q8RWY3	Putative chromatin-remodeling complex ATPase chain	AT3G06400.2	chromatin-remodeling protein 11 	LOC_Os01g27040.1	"chromatin-remodeling complex ATPase chain, putative, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	GO:0043044|ATP-dependent chromatin remodeling	GO:0031491|nucleosome binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0016585|chromatin remodeling complex
PtpAffx.208379.1.S1_at	A	A1TS	POPTR_0008s21060	POPTR_0008s21060 (11)	scaffold_8:15195508-15196353(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208380.1.S1_at	A	A1TS	POPTR_0008s21080	POPTR_0008s21080 (11)	scaffold_8:15205369-15207399(+) (11)	NA	Q5EBF1	Cytosolic purine 5'-nucleotidase	AT5G48960.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os01g14810.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr8g133970.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208381.1.S1_at	A	A1TS	POPTR_0008s21160	POPTR_0008s21160 (11)	scaffold_8:15321727-15321969(-) (11)	POPTR_0011s04940 (6)	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208382.1.S1_s_at	A	A2TS	POPTR_0008s21160	POPTR_0008s21170 (11)//POPTR_0008s21160 (11)	scaffold_8:15321595-15322249(-) (11)//scaffold_8:15340830-15341484(-) (11)	NA	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208384.1.S1_at	A	A1TS	POPTR_0010s04780	POPTR_0010s04780 (11)	scaffold_10:5928560-5928887(-) (11)	NA	O04536	Probable galacturonosyltransferase-like 9	AT1G70090.2	glucosyl transferase family 8 	LOC_Os02g50600.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr5g037690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.208385.1.S1_at	A	A1TS	POPTR_0010s04760	POPTR_0010s04760 (11)	scaffold_10:5894698-5897011(-) (11)	NA	NA	NA	AT1G70100.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g17530.1	expressed protein	Medtr5g037670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208386.1.S1_at	A	A1TS	POPTR_0010s04750	POPTR_0010s04750 (11)	scaffold_10:5890505-5891085(+) (11)	NA	O04532	Formin-like protein 8	AT1G70140.1	formin 8 	LOC_Os02g50570.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g037650.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208388.1.S1_at	A	A1TS	POPTR_0010s04720	POPTR_0010s04720 (11)	scaffold_10:5817512-5821350(-) (11)	NA	Q9H091	Zinc finger MYND domain-containing protein 15	AT1G70150.1	zinc ion binding 	LOC_Os07g29770.1	"zinc finger protein, putative, expressed"	Medtr5g037560.1	"zinc finger family protein, putative "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.208389.1.S1_at	A	A1TS	POPTR_0010s04690	POPTR_0010s04690 (11)	scaffold_10:5807547-5807922(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208389.1.S1_s_at	A	A2TS	POPTR_0010s04660	POPTR_0010s04690 (11)//POPTR_0010s04660 (11)	scaffold_10:5801459-5801808(+) (11)//scaffold_10:5807967-5808316(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208390.1.S1_at	A	A1TS	POPTR_0010s04680	POPTR_0010s04680 (11)	scaffold_10:5804693-5805818(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208391.1.S1_at	A	A1TS	POPTR_0010s04660	POPTR_0010s04660 (11)	scaffold_10:5801413-5801916(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208392.1.S1_at	A	A1TS	POPTR_0010s04650	POPTR_0010s04650 (11)	scaffold_10:5796440-5797118(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208393.1.S1_at	A	A1TS	POPTR_0010s04640	POPTR_0010s04640 (11)	scaffold_10:5788532-5789621(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208394.1.S1_s_at	A	A1TS	POPTR_0010s04640	POPTR_0010s04640 (11)	scaffold_10:5788365-5788893(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208395.1.S1_at	A	A1TS	POPTR_0010s04620	POPTR_0010s04620 (11)	scaffold_10:5755221-5755748(+) (11)	NA	Q7G764	Probable NAD(P)H-dependent oxidoreductase 1	AT1G59960.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g02490.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g106150.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.208395.1.S1_x_at	A	A1TS	POPTR_0010s04620	POPTR_0010s04620 (9)	scaffold_10:5755135-5755748(+) (11)	NA	Q7G764	Probable NAD(P)H-dependent oxidoreductase 1	AT1G59960.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g02490.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g106150.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.208396.1.S1_x_at	A	A2MS	POPTR_0010s04600	POPTR_0010s04600 (11)//POPTR_0228s00220 (9)	scaffold_10:5722668-5722862(+) (11)//scaffold_228:26275-26469(+) (9)	NA	NA	NA	AT1G67900.3	Phototropic-responsive NPH3 family protein 	LOC_Os06g08550.1	"BTBN14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr5g034190.1	NPH3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208398.1.S1_s_at	A	A1TS	POPTR_0010s04580	POPTR_0010s04580 (11)	scaffold_10:5697880-5698021(-) (11)	NA	Q39264	Zinc finger protein 5	AT1G10480.1	zinc finger protein 5 	LOC_Os01g32920.1	"ZOS1-08 - C2H2 zinc finger protein, expressed"	Medtr5g036910.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208399.1.S1_at	A	A1TS	POPTR_0010s04550	POPTR_0010s04550 (11)	scaffold_10:5655109-5655679(+) (11)	NA	O48677	Peroxidase 6	AT1G24110.1	Peroxidase superfamily protein 	LOC_Os02g50770.1	"peroxidase precursor, putative, expressed"	Medtr6g008740.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.208400.1.S1_at	A	A1TS	POPTR_0010s04540	POPTR_0010s04540 (11)	scaffold_10:5651095-5651609(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208401.1.S1_at	A	A1TS	POPTR_0010s04530	POPTR_0010s04530 (11)	scaffold_10:5638112-5639113(-) (11)	NA	O04373	IAA-amino acid hydrolase ILR1-like 4	AT1G51760.1	peptidase M20/M25/M40 family protein 	LOC_Os01g37960.1	"hydrolase, putative, expressed"	Medtr8g073970.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.208402.1.S1_x_at	A	A1TS	POPTR_0010s04520	POPTR_0010s04520 (9)	scaffold_10:5628794-5629216(+) (9)	NA	NA	NA	AT3G24530.1	AAA-type ATPase family protein / ankyrin repeat family protein 	LOC_Os02g16660.1	"cbxX, chromosomal, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208404.1.S1_at	A	A1TS	POPTR_0010s04470	POPTR_0010s04470 (11)	scaffold_10:5561201-5561623(+) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G69910.1	Protein kinase superfamily protein 	LOC_Os03g58750.1	"protein kinase domain containing protein, expressed"	Medtr5g038490.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208405.1.S1_at	A	A1TS	POPTR_0010s04460	POPTR_0010s04460 (11)	scaffold_10:5541715-5542039(-) (11)	NA	NA	NA	AT1G27100.1	Actin cross-linking protein 	LOC_Os03g58740.1	expressed protein	Medtr8g074940.1	Actin-crosslinking proteins 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208406.1.S1_at	A	A1MS	POPTR_0010s04380	POPTR_0010s04380 (11)	scaffold_10:5481740-5481796(-) (11)	NA	O80452	AMP deaminase	AT2G38280.2	"AMP deaminase, putative / myoadenylate deaminase, putative "	LOC_Os07g49270.2	"AMP deaminase, putative, expressed"	AC233100_67.1	AMP deaminase AC233100.6 286316-296871 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
PtpAffx.208406.1.S1_s_at	A	A1TS	POPTR_0010s04380	POPTR_0010s04380 (11)	scaffold_10:5481874-5482527(-) (11)	NA	O80452	AMP deaminase	AT2G38280.2	"AMP deaminase, putative / myoadenylate deaminase, putative "	LOC_Os07g49270.2	"AMP deaminase, putative, expressed"	AC233100_67.1	AMP deaminase AC233100.6 286316-296871 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
PtpAffx.208407.1.S1_at	A	A1TS	POPTR_0010s04380	POPTR_0010s04380 (10)	scaffold_10:5474558-5476607(-) (11)	NA	O80452	AMP deaminase	AT2G38280.2	"AMP deaminase, putative / myoadenylate deaminase, putative "	LOC_Os07g49270.2	"AMP deaminase, putative, expressed"	AC233100_67.1	AMP deaminase AC233100.6 286316-296871 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
PtpAffx.208408.1.S1_at	A	A1TS	POPTR_0010s04380	POPTR_0010s04380 (11)	scaffold_10:5466403-5468213(-) (11)	NA	O80452	AMP deaminase	AT2G38280.2	"AMP deaminase, putative / myoadenylate deaminase, putative "	LOC_Os07g49270.2	"AMP deaminase, putative, expressed"	AC233100_67.1	AMP deaminase AC233100.6 286316-296871 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
PtpAffx.208409.1.S1_at	A	A1TS	POPTR_0010s04370	POPTR_0010s04370 (11)	scaffold_10:5450298-5450377(+) (11)	NA	Q8RX77	Nitrate transporter 1.7	AT1G69870.1	nitrate transporter 1.7 	LOC_Os01g68510.1	"peptide transporter PTR2, putative, expressed"	Medtr5g039070.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.208409.1.S1_s_at	A	A1TS	POPTR_0010s04370	POPTR_0010s04370 (11)	scaffold_10:5450369-5450757(+) (11)	NA	Q8RX77	Nitrate transporter 1.7	AT1G69870.1	nitrate transporter 1.7 	LOC_Os01g68510.1	"peptide transporter PTR2, putative, expressed"	Medtr5g039070.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.208410.1.S1_at	A	A1TS	POPTR_0010s04360	POPTR_0010s04360 (11)	scaffold_10:5441551-5443750(+) (11)	NA	NA	NA	AT1G27070.1	5'-AMP-activated protein kinase-related 	LOC_Os03g48170.1	"5-AMP-activated protein kinase-related, putative, expressed"	Medtr5g039250.1	"Glycoside hydrolase, family 13, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208412.1.S1_at	A	A1TS	POPTR_0010s04320	POPTR_0010s04320 (11)	scaffold_10:5360957-5361455(-) (11)	NA	Q8H157	Nitrate transporter 1.2	AT1G69850.1	nitrate transporter 1:2 	LOC_Os06g38294.1	"peptide transporter PTR2, putative, expressed"	Medtr5g039420.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.208413.1.S1_at	A	A1TS	POPTR_0010s04310	POPTR_0010s04310 (11)	scaffold_10:5345390-5345940(+) (11)	NA	Q01745	Galactose oxidase	AT1G14430.1	glyoxal oxidase-related protein 	LOC_Os03g15320.1	"glyoxal oxidase-related, putative, expressed"	Medtr5g039440.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208414.1.S1_at	A	A1TS	POPTR_0010s04290	POPTR_0010s04290 (11)	scaffold_10:5327655-5328568(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208415.1.S1_at	A	A1TS	POPTR_0010s04260	POPTR_0010s04260 (11)	scaffold_10:5274778-5275510(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208418.1.S1_s_at	A	A2TS	POPTR_0010s00230	POPTR_0010s00250 (11)//POPTR_0010s00230 (11)	scaffold_10:25900-26544(+) (11)//scaffold_10:54932-55576(-) (11)	NA	O50001	Major allergen Pru ar 1	AT1G24020.2	MLP-like protein 423 	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.208420.1.S1_at	A	A1TS	POPTR_0010s00260	POPTR_0010s00260 (11)	scaffold_10:58510-58992(-) (11)	NA	O24248	Major allergen Pru av 1	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.208421.1.S1_s_at	A	A1MS	POPTR_0010s00320	POPTR_0010s00320 (11)	scaffold_10:115787-116177(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	LOC_Os03g12350.4	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.208422.1.S1_at	A	A1TS	POPTR_0010s00340	POPTR_0010s00340 (11)	scaffold_10:118177-118247(-) (11)	NA	Q8GZ17	COBRA-like protein 7	AT4G16120.1	COBRA-like protein-7 precursor 	LOC_Os06g47110.1	"COBRA-like protein precursor, putative, expressed"	Medtr5g005810.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208422.1.S1_s_at	A	A1TS	POPTR_0010s00340	POPTR_0010s00340 (11)	scaffold_10:118279-118771(-) (11)	NA	Q8GZ17	COBRA-like protein 7	AT4G16120.1	COBRA-like protein-7 precursor 	LOC_Os06g47110.1	"COBRA-like protein precursor, putative, expressed"	Medtr5g005810.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208423.1.S1_at	A	A1MS	POPTR_0010s00350	POPTR_0010s00350 (11)	scaffold_10:142443-142790(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208424.1.S1_at	A	A1TS	POPTR_0010s00390	POPTR_0010s00390 (11)	scaffold_10:177961-178454(+) (11)	NA	Q41328	Pto-interacting protein 1	AT1G48210.2	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.2	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208425.1.S1_at	A	A1TS	POPTR_0010s00400	POPTR_0010s00400 (11)	scaffold_10:181787-182654(-) (11)	NA	Q8LEB6	Probable receptor-like protein kinase At5g18500	AT5G18500.2	Protein kinase superfamily protein 	LOC_Os01g21960.1	"serine/threonine-protein kinase, putative, expressed"	Medtr8g134140.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208425.1.S1_x_at	A	A1TS	POPTR_0010s00400	POPTR_0010s00400 (11)	scaffold_10:181787-183122(-) (11)	NA	Q8LEB6	Probable receptor-like protein kinase At5g18500	AT5G18500.2	Protein kinase superfamily protein 	LOC_Os01g21960.1	"serine/threonine-protein kinase, putative, expressed"	Medtr8g134140.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208426.1.S1_at	A	A1TS	POPTR_0010s00410	POPTR_0010s00410 (11)	scaffold_10:200189-201199(+) (11)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT3G17430.1	Nucleotide-sugar transporter family protein 	LOC_Os03g49570.1	"domain of unknown function, DUF250 domain containing protein, expressed"	Medtr8g134090.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208427.1.S1_at	A	A1TS	POPTR_0010s00420	POPTR_0010s00420 (11)	scaffold_10:202215-202552(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208428.1.S1_at	A	A1TS	POPTR_0010s00430	POPTR_0010s00430 (11)	scaffold_10:206508-207024(+) (11)	NA	Q9LRP1	Novel plant SNARE 13	AT3G17440.1	novel plant snare 13 	LOC_Os03g25390.1	"novel plant SNARE 11, putative, expressed"	Medtr8g134080.1	Target SNARE coiled-coil region; Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208428.1.S1_s_at	A	A1TS	POPTR_0010s00430	POPTR_0010s00430 (11)	scaffold_10:207058-208849(+) (11)	NA	Q9LRP1	Novel plant SNARE 13	AT3G17440.1	novel plant snare 13 	LOC_Os03g25390.1	"novel plant SNARE 11, putative, expressed"	Medtr8g134080.1	Target SNARE coiled-coil region; Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208429.1.S1_at	A	A1TS	POPTR_0010s00460	POPTR_0010s00460 (11)	scaffold_10:231946-232966(-) (11)	NA	NA	NA	AT1G09520.1	"LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr8g133790.1	"Zinc finger, PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208430.1.S1_at	A	A1TS	POPTR_0010s00480	POPTR_0010s00480 (11)	scaffold_10:240582-241793(+) (11)	NA	Q931Q4	GTP pyrophosphokinase	AT3G17470.1	Ca2+-activated RelA/spot homolog 	LOC_Os05g06890.1	"relA-SpoT like protein RSH4, putative, expressed"	Medtr8g134050.1	Calcium-binding EF-hand; RelA/SpoT 	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.208431.1.S1_s_at	A	A1TS	POPTR_0010s00490	POPTR_0010s00490 (11)	scaffold_10:244150-245176(-) (11)	NA	Q8RWC9	CBL-interacting serine/threonine-protein kinase 1	AT3G17510.2	CBL-interacting protein kinase 1 	LOC_Os01g18800.1	"CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g052930.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208432.1.S1_at	A	A1MS	POPTR_0010s00510	POPTR_0010s00510 (10)	scaffold_10:265793-266427(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208433.1.S1_s_at	A	A1TS	POPTR_0010s00540	POPTR_0010s00540 (11)	scaffold_10:295390-296027(+) (11)	NA	O80725	ABC transporter B family member 4	AT2G47000.1	ATP binding cassette subfamily B4 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.208434.1.S1_at	A	A1TS	POPTR_0010s00580	POPTR_0010s00580 (11)	scaffold_10:310328-314299(-) (11)	NA	Q5FWF4	Zinc finger Ran-binding domain-containing protein 3	AT1G48310.1	chromatin remodeling factor18 	LOC_Os07g44210.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr8g133800.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208435.1.S1_at	A	A1TS	POPTR_0010s00600	POPTR_0010s00600 (11)	scaffold_10:324658-325360(+) (11)	NA	P42211	Aspartic proteinase	AT1G62290.2	Saposin-like aspartyl protease family protein 	LOC_Os05g04630.6	"retrotransposon protein, putative, SINE subclass, expressed"	Medtr2g052870.1	"Peptidase A1, pepsin "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
PtpAffx.208436.1.S1_at	A	A1TS	POPTR_0010s00630	POPTR_0010s00630 (11)	scaffold_10:336787-337514(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g04650.1	expressed protein	Medtr2g052500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208437.1.S1_at	A	A1TS	POPTR_0010s00650	POPTR_0010s00650 (11)	scaffold_10:348584-348636(+) (11)	NA	NA	NA	AT3G05858.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr2g052410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208437.1.S1_s_at	A	A1TS	POPTR_0010s00650	POPTR_0010s00650 (11)	scaffold_10:348626-348826(+) (11)	NA	NA	NA	AT3G05858.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr2g052410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208440.1.S1_at	A	A1TS	POPTR_0010s00730	POPTR_0010s00730 (11)	scaffold_10:434958-434997(+) (11)	NA	Q8GUG7	DEAD-box ATP-dependent RNA helicase 50	AT3G06980.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g01830.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g163690.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.208441.1.S1_at	A	A2TS	POPTR_0155s00225	POPTR_0155s00225 (10)//POPTR_0010s00740 (9)	scaffold_10:448398-448481(+) (9)//scaffold_155:43704-44096(-) (10)	NA	Q9LUN4	Cation/H(+) antiporter 19	AT3G17630.1	cation/H+ exchanger 19 	LOC_Os05g19500.2	"ATCHX, putative, expressed"	Medtr4g107420.1	Sodium/hydrogen exchanger 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208441.1.S1_s_at	A	A2TS	POPTR_0010s00740	POPTR_0155s00225 (11)//POPTR_0010s00740 (11)	scaffold_10:448198-448737(+) (11)//scaffold_155:43757-44296(-) (11)	NA	Q9LUN4	Cation/H(+) antiporter 19	AT3G17630.1	cation/H+ exchanger 19 	LOC_Os05g19500.1	"ATCHX, putative, expressed"	Medtr4g107670.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.208444.1.S1_at	A	A1TS	POPTR_0271s00230	POPTR_0271s00230 (10)	scaffold_271:8310-9383(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g13340.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208445.1.S1_s_at	A	A2TS	POPTR_0271s00210	POPTR_0271s00210 (11)//POPTR_0155s00200 (9)	scaffold_155:2066-2402(+) (11)//scaffold_271:3223-3559(+) (11)	NA	NA	NA	AT3G17080.1	Plant self-incompatibility protein S1 family 	NA	NA	Medtr6g017860.1	Plant self-incompatibility S1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208446.1.S1_at	A	A1MS	POPTR_0271s00200	POPTR_0271s00200 (11)	scaffold_10:446240-446461(+) (11)//scaffold_155:127-348(-) (11)//scaffold_271:1302-1523(-) (11)	NA	Q9LUN4	Cation/H(+) antiporter 19	AT3G17630.1	cation/H+ exchanger 19 	LOC_Os12g42200.1	"ATCHX, putative, expressed"	Medtr4g107670.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.208446.1.S1_s_at	A	A2TS	POPTR_0010s00740	POPTR_0271s00200 (11)//POPTR_0010s00740 (11)	scaffold_10:446323-446442(+) (11)//scaffold_155:146-265(-) (11)//scaffold_271:1321-1440(-) (11)	NA	Q9LUN4	Cation/H(+) antiporter 19	AT3G17630.1	cation/H+ exchanger 19 	LOC_Os05g19500.1	"ATCHX, putative, expressed"	Medtr4g107670.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.208448.1.S1_at	A	A2TS	POPTR_0010s00740	POPTR_0155s00225 (10)//POPTR_0010s00740 (10)	scaffold_10:448518-448607(+) (10)//scaffold_155:43887-43976(-) (10)	NA	Q9LUN4	Cation/H(+) antiporter 19	AT3G17630.1	cation/H+ exchanger 19 	LOC_Os05g19500.1	"ATCHX, putative, expressed"	Medtr4g107670.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.208449.1.S1_at	A	A1TS	POPTR_0010s00790	POPTR_0010s00790 (11)	scaffold_10:496965-498185(+) (11)	NA	Q8TQR1	Chaperone protein dnaJ	AT3G06778.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g61550.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g124470.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.208450.1.S1_at	A	A1TS	POPTR_0010s00830	POPTR_0010s00830 (11)	scaffold_10:524495-525443(-) (11)	NA	Q9M9W9	Probable protein phosphatase 2C 34	AT3G05640.2	Protein phosphatase 2C family protein 	LOC_Os05g29030.2	"protein phosphatase 2C, putative, expressed"	Medtr7g138290.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208451.1.S1_at	A	A1TS	POPTR_0010s00840	POPTR_0010s00840 (11)	scaffold_10:529686-530690(-) (11)	NA	Q9M9W9	Probable protein phosphatase 2C 34	AT3G05640.2	Protein phosphatase 2C family protein 	LOC_Os05g29030.2	"protein phosphatase 2C, putative, expressed"	Medtr7g138290.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208452.1.S1_at	A	A1TS	POPTR_0010s00860	POPTR_0010s00860 (11)	scaffold_10:557240-557523(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208453.1.S1_at	A	A1TS	POPTR_0010s00870	POPTR_0010s00870 (11)	scaffold_10:560123-560745(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208454.1.S1_at	A	A1TS	POPTR_0010s00880	POPTR_0010s00880 (11)	scaffold_10:580756-581325(+) (11)	NA	NA	NA	AT3G06780.1	glycine-rich protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208455.1.S1_at	A	A2TS	POPTR_0010s00890	POPTR_0010s00890 (11)//POPTR_0929s00210 (11)	scaffold_10:585656-589084(-) (11)//scaffold_929:1268-1576(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208462.1.S1_at	A	A1TS	POPTR_0010s01240	POPTR_0010s01240 (11)	scaffold_10:1105126-1106309(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208464.1.S1_at	A	A1TS	POPTR_0010s01345	POPTR_0010s01345 (11)	scaffold_10:1415646-1415948(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208464.1.S1_x_at	A	A1TS	POPTR_0010s01345	POPTR_0010s01345 (11)	scaffold_10:1404432-1415948(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208465.1.S1_at	A	A1TS	POPTR_0010s01350	POPTR_0010s01350 (11)	scaffold_10:1458212-1458863(+) (11)	NA	O24301	Sucrose synthase 2	AT4G02280.1	sucrose synthase 3 	LOC_Os03g22120.2	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208466.1.S1_s_at	A	A1TS	POPTR_0010s01370	POPTR_0010s01370 (11)	scaffold_10:1480483-1481230(+) (11)	NA	Q8K370	Acyl-CoA dehydrogenase family member 10	AT3G06810.1	acyl-CoA dehydrogenase-related 	LOC_Os07g47820.1	"acyl-CoA dehydrogenase family member 10, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.208467.1.S1_at	A	A1TS	POPTR_0010s01370	POPTR_0010s01370 (11)	scaffold_10:1482991-1483870(+) (11)	NA	Q8K370	Acyl-CoA dehydrogenase family member 10	AT3G06810.1	acyl-CoA dehydrogenase-related 	LOC_Os07g47820.1	"acyl-CoA dehydrogenase family member 10, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.208468.1.S1_at	A	A1TS	POPTR_0010s01380	POPTR_0010s01380 (11)	scaffold_10:1488928-1489500(+) (11)	NA	Q3E8Z8	Putative pectinesterase/pectinesterase inhibitor 28	AT5G27870.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os03g18860.1	"pectinesterase, putative, expressed"	Medtr7g138410.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.208469.1.S1_at	A	A1TS	POPTR_0010s01390	POPTR_0010s01390 (11)	scaffold_10:1494026-1495516(+) (11)	NA	Q6IBW4	Condensin-2 complex subunit H2	AT3G16730.1	"CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). "	LOC_Os07g33360.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208471.1.S1_at	A	A1TS	POPTR_0010s01490	POPTR_0010s01490 (11)	scaffold_10:1612301-1612337(-) (11)	NA	P11182	"Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial"	AT3G06850.2	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os01g21160.2	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.208471.1.S1_x_at	A	A1TS	POPTR_0010s01490	POPTR_0010s01490 (11)	scaffold_10:1612301-1613547(-) (11)	NA	P11182	"Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial"	AT3G06850.2	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os01g21160.2	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.208472.1.S1_at	A	A1TS	POPTR_0010s01500	POPTR_0010s01500 (11)	scaffold_10:1676506-1676944(+) (11)	NA	A1L1P9	Multidrug and toxin extrusion protein 1	AT5G49130.1	MATE efflux family protein 	LOC_Os04g48290.1	"MATE efflux family protein, putative, expressed"	Medtr5g076410.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.208475.1.S1_at	A	A1TS	POPTR_0010s01550	POPTR_0010s01550 (11)	scaffold_10:1755347-1755984(-) (11)	NA	Q9NVI1	Fanconi anemia group I protein	AT5G49110.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g22190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208477.1.S1_at	A	A1TS	POPTR_0010s01600	POPTR_0010s01600 (11)	scaffold_10:1818064-1818509(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208478.1.S1_at	A	A1TS	POPTR_0010s01610	POPTR_0010s01610 (11)	scaffold_10:1825386-1825839(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208479.1.S1_at	A	A1TS	POPTR_0010s01680	POPTR_0010s01680 (11)	scaffold_10:1868618-1868896(-) (11)	NA	Q9FH28	Chaperone protein dnaJ 49	AT5G49060.1	"Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) "	LOC_Os05g30130.1	"chaperone protein dnaJ 49, putative, expressed"	Medtr7g139960.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.208480.1.S1_at	A	A1TS	POPTR_0010s01690	POPTR_0010s01690 (11)	scaffold_10:1873284-1873673(-) (11)	NA	Q6ZQK0	Condensin-2 complex subunit D3	AT4G15890.1	binding 	LOC_Os12g36170.1	"HEAT repeat family protein, putative, expressed"	Medtr7g134000.1	"Condensin-2 complex subunit D3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208483.1.S1_at	A	A1TS	POPTR_0010s01760	POPTR_0010s01760 (11)	scaffold_10:1931427-1932314(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208484.1.S1_at	A	A1TS	POPTR_0010s01770	POPTR_0010s01770 (11)	scaffold_10:1935927-1937101(-) (11)	NA	NA	NA	AT4G15840.1	BTB/POZ domain-containing protein 	LOC_Os01g70670.1	"BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr8g138670.1	BTB/POZ; TatD-related deoxyribonuclease; MATH; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208485.1.S1_at	A	A1TS	POPTR_0010s01780	POPTR_0010s01780 (11)	scaffold_10:1943644-1943944(+) (11)	NA	Q9M907	Pentatricopeptide repeat-containing protein At3g06920	AT3G06920.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g14530.3	"PPR repeat containing protein, expressed"	Medtr5g102690.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208486.1.S1_at	A	A1TS	POPTR_0010s01800	POPTR_0010s01800 (11)	scaffold_10:1976029-1976297(+) (11)	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.208486.1.S1_x_at	A	A1TS	POPTR_0010s01800	POPTR_0010s01800 (11)	scaffold_10:1976029-1976429(+) (11)	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.208487.1.S1_at	A	A1MS	POPTR_0010s01810	POPTR_0010s01810 (10)	scaffold_10:1978069-1979190(+) (11)	NA	Q9SJF0	Serine/threonine-protein phosphatase BSL2	AT1G08420.2	BRI1 suppressor 1 (BSU1)-like 2 	LOC_Os03g44500.1	"serine/threonine protein phosphatase, putative, expressed"	Medtr4g067100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208488.1.S1_at	A	A1TS	POPTR_0010s01810	POPTR_0010s01810 (11)	scaffold_10:1980176-1981420(+) (11)	NA	Q9SJF0	Serine/threonine-protein phosphatase BSL2	AT1G08420.2	BRI1 suppressor 1 (BSU1)-like 2 	LOC_Os03g44500.1	"serine/threonine protein phosphatase, putative, expressed"	Medtr4g067100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208491.1.S1_at	A	A1TS	POPTR_0010s01830	POPTR_0010s01830 (11)	scaffold_10:2021430-2023440(+) (11)	NA	Q8YXY3	Isoleucyl-tRNA synthetase	AT5G49030.3	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os02g53770.1	"tRNA synthetase class I, putative, expressed"	Medtr4g104390.1	"Aminoacyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.208494.1.S1_s_at	A	A1TS	POPTR_0010s01900	POPTR_0010s01900 (11)	scaffold_10:2105299-2105550(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208495.1.S1_at	A	A1TS	POPTR_0010s01920	POPTR_0010s01920 (11)	scaffold_10:2134571-2135145(-) (11)	NA	NA	NA	AT3G21490.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr8g139800.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.208496.1.S1_at	A	A1TS	POPTR_0010s01960	POPTR_0010s01960 (11)	scaffold_10:2182747-2183151(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208498.1.S1_at	A	A1TS	POPTR_0010s03530	POPTR_0010s03530 (11)	scaffold_10:4277592-4278502(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208499.1.S1_at	A	A1TS	POPTR_0010s03300	POPTR_0010s03300 (11)	scaffold_10:4051731-4051973(-) (11)	NA	Q5R4M2	Serine/threonine-protein kinase ULK4	AT5G18700.1	Protein kinase family protein with ARM repeat domain 	LOC_Os01g15480.1	"EMB3013, putative, expressed"	Medtr2g025470.1	Protein kinase; Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208500.1.S1_at	A	A1MS	POPTR_0010s03280	POPTR_0010s03280 (10)	scaffold_10:4031959-4032345(-) (10)	NA	B9DHD7	Vesicle-associated protein 2-2	AT1G08820.2	vamp/synaptobrevin-associated protein 27-2 	LOC_Os01g71050.1	"MSP domain containing protein, putative, expressed"	Medtr8g139690.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.208502.1.S1_at	A	A1TS	POPTR_0010s03270	POPTR_0010s03270 (11)	scaffold_10:4022203-4022867(+) (11)	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr8g139670.1	Sodium/hydrogen exchanger subfamily 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.208503.1.S1_at	A	A1TS	POPTR_0010s03250	POPTR_0010s03250 (9)	scaffold_10:3990954-3992617(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g35060.3	expressed protein	Medtr4g142730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208504.1.S1_s_at	A	A1TS	POPTR_0010s03250	POPTR_0010s03250 (11)	scaffold_10:3986814-3988134(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g35060.3	expressed protein	Medtr4g142730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208505.1.S1_s_at	A	A2TS	POPTR_0003s05680	POPTR_0003s05680 (11)//POPTR_0010s03240 (11)	scaffold_10:3982249-3982291(-) (11)//scaffold_3:7079983-7080025(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208505.1.S1_x_at	A	A1TS	POPTR_0010s03240	POPTR_0010s03240 (11)	scaffold_10:3982232-3982390(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208507.1.S1_at	A	A1TS	POPTR_0010s03225	POPTR_0010s03225 (11)	scaffold_10:3973412-3974124(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208507.1.S1_x_at	A	A1TS	POPTR_0010s03225	POPTR_0010s03225 (11)	scaffold_10:3973413-3974124(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208508.1.S1_at	A	A1TS	POPTR_0010s03220	POPTR_0010s03220 (10)	scaffold_10:3968844-3969861(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208509.1.S1_at	A	A1TS	POPTR_0010s03200	POPTR_0010s03200 (11)	scaffold_10:3916386-3916893(-) (11)	NA	NA	NA	AT3G06150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g32960.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208510.1.S1_at	A	A1TS	POPTR_0010s03180	POPTR_0010s03180 (11)	scaffold_10:3899020-3899359(-) (11)	NA	NA	NA	AT3G06145.1	unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208511.1.S1_at	A	A1TS	POPTR_0010s03160	POPTR_0010s03160 (11)	scaffold_10:3882970-3883237(-) (11)	NA	Q6INH1	RING finger protein 157	AT3G06140.1	RING/U-box superfamily protein 	LOC_Os03g15000.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208513.1.S1_s_at	A	A1TS	POPTR_0010s03130	POPTR_0010s03130 (11)	scaffold_10:3783015-3784970(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208514.1.S1_at	A	A1TS	POPTR_0010s03130	POPTR_0010s03130 (10)	scaffold_10:3783925-3784243(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208516.1.S1_at	A	A1TS	POPTR_0010s03090	POPTR_0010s03090 (11)	scaffold_10:3722857-3723351(-) (11)	NA	P0C8Q8	"Pentatricopeptide repeat-containing protein At5g19020, mitochondrial"	AT5G19020.1	mitochondrial editing factor  18 	LOC_Os01g29430.2	"tetratricopeptide-like helical, putative, expressed"	Medtr2g026800.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208520.1.S1_at	A	A1TS	POPTR_0010s03060	POPTR_0010s03060 (11)	scaffold_10:3673148-3673543(-) (11)	NA	NA	NA	AT1G21680.1	DPP6 N-terminal domain-like protein 	NA	NA	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208520.1.S1_x_at	A	A1TS	POPTR_0010s03060	POPTR_0010s03060 (11)	scaffold_10:3673148-3673668(-) (11)	NA	NA	NA	AT1G21680.1	DPP6 N-terminal domain-like protein 	NA	NA	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208522.1.S1_at	A	A1TS	POPTR_0010s03030	POPTR_0010s03030 (11)	scaffold_10:3573635-3574253(-) (11)	NA	NA	NA	AT5G18980.1	ARM repeat superfamily protein 	LOC_Os03g24730.1	expressed protein	Medtr2g026440.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208523.1.S1_at	A	A1TS	POPTR_0010s02970	POPTR_0010s02970 (11)	scaffold_10:3489710-3490065(-) (11)	NA	NA	NA	AT4G13110.1	BSD domain-containing protein 	LOC_Os01g16670.1	"BSD domain-containing protein, putative, expressed"	Medtr2g026150.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208524.1.S1_at	A	A1TS	POPTR_0010s02940	POPTR_0010s02940 (11)	scaffold_10:3469243-3469645(-) (11)	NA	Q9H0R1	MHD domain-containing death-inducing protein	AT2G20790.1	clathrin adaptor complexes medium subunit family protein 	LOC_Os12g34370.1	"adaptor complexes medium subunit family protein, expressed"	NA	NA	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.208525.1.S1_at	A	A1TS	POPTR_0010s02930	POPTR_0010s02930 (11)	scaffold_10:3420090-3420588(-) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT5G18930.1	Adenosylmethionine decarboxylase family protein 	LOC_Os05g04990.1	"adenosylmethionine decarboxylase, putative, expressed"	Medtr8g140130.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.208526.1.S1_at	A	A1TS	POPTR_0010s02910	POPTR_0010s02910 (11)	scaffold_10:3381576-3383105(-) (11)	NA	Q7XJ53	Probable protein phosphatase 2C 35	AT3G06270.1	Protein phosphatase 2C family protein 	LOC_Os02g17970.1	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g026070.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208527.1.S1_at	A	A1TS	POPTR_0010s02900	POPTR_0010s02900 (10)	scaffold_10:3373829-3374875(+) (11)	NA	Q9WUU9	80 kDa MCM3-associated protein	AT3G06290.1	SAC3/GANP/Nin1/mts3/eIF-3 p25 family 	LOC_Os07g45160.1	"SAC3/GANP family protein, expressed"	Medtr2g026060.1	SAC3/GANP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208528.1.S1_at	A	A1TS	POPTR_0010s02900	POPTR_0010s02900 (10)	scaffold_10:3372017-3373204(+) (11)	NA	Q9WUU9	80 kDa MCM3-associated protein	AT3G06290.1	SAC3/GANP/Nin1/mts3/eIF-3 p25 family 	LOC_Os07g45160.1	"SAC3/GANP family protein, expressed"	Medtr2g026060.1	SAC3/GANP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208529.1.S1_at	A	A1TS	POPTR_0010s02890	POPTR_0010s02890 (11)	scaffold_10:3368870-3369178(-) (11)	NA	Q6AUK5	"Peptide methionine sulfoxide reductase B3, chloroplastic"	AT4G21860.3	methionine sulfoxide reductase B 2 	LOC_Os05g33510.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr2g026010.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
PtpAffx.208530.1.S1_at	A	A1TS	POPTR_0010s02870	POPTR_0010s02870 (11)	scaffold_10:3360312-3361741(-) (11)	NA	Q0WPJ7	Putative E3 ubiquitin-protein ligase RF298	AT4G03000.2	RING/U-box superfamily protein 	LOC_Os05g04950.2	"protein binding protein, putative, expressed"	Medtr2g025960.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208531.1.S1_at	A	A1TS	POPTR_0010s02860	POPTR_0010s02860 (11)	scaffold_10:3345678-3346984(-) (11)	NA	Q42910	"Pyruvate, phosphate dikinase, chloroplastic"	AT4G15530.6	pyruvate orthophosphate dikinase 	LOC_Os05g33570.1	"pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed"	Medtr8g140100.1	"Pyruvate phosphate dikinase, PEP/pyruvate-binding; "	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.208532.1.S1_at	A	A1TS	POPTR_0010s02850	POPTR_0010s02850 (11)	scaffold_10:3341422-3342550(-) (11)	NA	NA	NA	AT3G21530.1	DNAse I-like superfamily protein 	LOC_Os07g45100.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr2g025950.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208533.1.S1_at	A	A1TS	POPTR_0010s02810	POPTR_0010s02810 (11)	scaffold_10:3296521-3297403(-) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G18910.1	Protein kinase superfamily protein 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr2g025900.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208534.1.S1_at	A	A1TS	POPTR_0010s02800	POPTR_0010s02800 (11)	scaffold_10:3293241-3295204(-) (11)	NA	NA	NA	AT5G18900.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g41010.1	"oxidoreductase, putative, expressed"	Medtr2g025880.1	Metridin-like ShK toxin; 2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208537.1.S1_at	A	A1TS	POPTR_0010s02710	POPTR_0010s02710 (11)	scaffold_10:3170515-3171791(+) (11)	NA	Q8S9G8	Squamosa promoter-binding-like protein 7	AT5G18830.3	squamosa promoter binding protein-like 7 	LOC_Os05g33810.1	"OsSPL9 - SBP-box gene family member, expressed"	Medtr2g025690.1	SBP 	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0046872|metal ion binding	GO:0005634|nucleus
PtpAffx.208540.1.S1_at	A	A1TS	POPTR_0010s02600	POPTR_0010s02600 (11)	scaffold_10:3012340-3012755(-) (11)	NA	NA	NA	AT2G47770.1	TSPO(outer membrane tryptophan-rich sensory protein)-related 	NA	NA	Medtr7g130420.1	TspO/MBR-related protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.208541.1.S1_at	A	A1TS	POPTR_0010s02590	POPTR_0010s02590 (11)	scaffold_10:3009572-3010111(-) (11)	NA	Q9LZJ3	Xyloglucan 6-xylosyltransferase	AT3G62720.2	xylosyltransferase 1 	LOC_Os03g18820.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
PtpAffx.208542.1.S1_at	A	A1TS	POPTR_0010s02560	POPTR_0010s02560 (11)	scaffold_10:2997024-2998118(-) (11)	NA	Q9LUS8	Probable protein phosphatase 2C 40	AT3G16560.1	Protein phosphatase 2C family protein 	LOC_Os04g33080.3	"protein phosphatase 2C, putative, expressed"	Medtr8g138810.1	Site-specific DNA-methyltransferase (cytosine-N4-specific); Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208543.1.S1_at	A	A1TS	POPTR_0010s02550	POPTR_0010s02550 (11)	scaffold_10:2994838-2995107(+) (11)	NA	NA	NA	AT5G27690.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os05g05820.1	"pro-resilin precursor, putative, expressed"	Medtr8g138820.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.208545.1.S1_at	A	A1TS	POPTR_0010s02510	POPTR_0010s02510 (10)	scaffold_10:2934085-2934225(+) (11)	NA	P46440	Glutathione S-transferase APIC	AT2G47730.1	glutathione S-transferase phi 8 	LOC_Os01g27390.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208547.1.S1_at	A	A1TS	POPTR_0010s02460	POPTR_0010s02460 (11)	scaffold_10:2856850-2857441(+) (11)	NA	NA	NA	AT2G47820.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1). 	LOC_Os07g38080.2	"homeodomain-like, putative, expressed"	Medtr7g130200.1	"F7G19.9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208549.1.S1_at	A	A1MS	POPTR_0010s02440	POPTR_0010s02440 (11)	scaffold_10:2831318-2831497(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208550.1.S1_at	A	A1TS	POPTR_0010s02430	POPTR_0010s02430 (11)	scaffold_10:2829062-2829556(+) (11)	NA	Q39224	Protein SRG1	AT3G21420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g70930.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr5g067830.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.208551.1.S1_at	A	A1TS	POPTR_0010s02410	POPTR_0010s02410 (10)	scaffold_10:2774712-2776684(-) (11)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr1g099580.1	DIRP; Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208553.1.S1_at	A	A1TS	POPTR_0010s02370	POPTR_0010s02370 (11)	scaffold_10:2721003-2722598(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208554.1.S1_at	A	A2TS	POPTR_0010s02360	POPTR_0010s02360 (11)//POPTR_0010s02350 (9)	scaffold_10:2697987-2698865(+) (10)//scaffold_10:2702579-2703456(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208556.1.S1_at	A	A1TS	POPTR_0010s02320	POPTR_0010s02320 (11)	scaffold_10:2661433-2664952(-) (11)	NA	Q6NPN3	Zinc finger CCCH domain-containing protein 58	AT5G18550.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g15460.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr2g024920.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.208557.1.S1_at	A	A1TS	POPTR_0010s02300	POPTR_0010s02300 (11)	scaffold_10:2643670-2643947(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g29570.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208558.1.S1_at	A	A1TS	POPTR_0010s02290	POPTR_0010s02290 (11)	scaffold_10:2635273-2637259(+) (11)	NA	A4XJS8	GTPase obg	AT5G18570.1	GTP1/OBG family protein 	LOC_Os03g58540.2	"spo0B-associated GTP-binding protein, putative, expressed"	Medtr2g024970.1	GTP1/OBG subdomain; 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.208559.1.S1_at	A	A1TS	POPTR_0010s02250	POPTR_0010s02250 (11)	scaffold_10:2594105-2594899(-) (11)	NA	Q8VY89	Anaphase-promoting complex subunit 7	AT2G39090.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os05g05720.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g025010.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208560.1.S1_at	A	A1TS	POPTR_0010s02240	POPTR_0010s02240 (11)	scaffold_10:2590640-2592424(+) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G18590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os12g35350.2	"kelch repeat protein, putative, expressed"	Medtr8g139440.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208561.1.S1_at	A	A1TS	POPTR_0010s02210	POPTR_0010s02210 (11)	scaffold_10:2532591-2533203(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208562.1.S1_at	A	A1TS	POPTR_0010s02200	POPTR_0010s02200 (11)	scaffold_10:2516466-2516734(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208562.1.S1_s_at	A	A2TS	POPTR_0008s21040	POPTR_0010s02200 (11)//POPTR_0008s21040 (11)	scaffold_10:2516318-2516420(-) (11)//scaffold_8:15106178-15106280(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208562.1.S1_x_at	A	A1TS	POPTR_0010s02200	POPTR_0010s02200 (11)	scaffold_10:2516318-2516809(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208563.1.S1_at	A	A1TS	POPTR_0010s02180	POPTR_0010s02180 (11)	scaffold_10:2491249-2492506(+) (11)	NA	Q8RWY3	Putative chromatin-remodeling complex ATPase chain	AT5G18620.2	chromatin remodeling factor17 	LOC_Os01g27040.1	"chromatin-remodeling complex ATPase chain, putative, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	GO:0043044|ATP-dependent chromatin remodeling	GO:0031491|nucleosome binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0016585|chromatin remodeling complex
PtpAffx.208563.1.S1_x_at	A	A1TS	POPTR_0010s02180	POPTR_0010s02180 (9)	scaffold_10:2491249-2492506(+) (9)	NA	Q8RWY3	Putative chromatin-remodeling complex ATPase chain	AT5G18620.2	chromatin remodeling factor17 	LOC_Os01g27040.1	"chromatin-remodeling complex ATPase chain, putative, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	GO:0043044|ATP-dependent chromatin remodeling	GO:0031491|nucleosome binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0016585|chromatin remodeling complex
PtpAffx.208565.1.S1_at	A	A1TS	POPTR_0010s02100	POPTR_0010s02100 (11)	scaffold_10:2422085-2423561(-) (11)	POPTR_0008s20050 (6)	NA	NA	AT2G28290.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g14406.1	"SYD, putative, expressed"	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208566.1.S1_at	A	A1MS	POPTR_0010s02090	POPTR_0010s02090 (10)	scaffold_10:2418792-2418931(-) (10)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.208567.1.S1_at	A	A1TS	POPTR_0010s02090	POPTR_0010s02090 (10)	scaffold_10:2414762-2415801(-) (11)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.208568.1.S1_at	A	A1TS	POPTR_0010s02080	POPTR_0010s02080 (11)	scaffold_10:2408332-2409423(-) (11)	POPTR_0008s20050 (7)	P51532	Transcription activator BRG1	AT2G28290.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.2	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208569.1.S1_at	A	A1TS	POPTR_0010s02060	POPTR_0010s02060 (11)	scaffold_10:2384802-2385357(-) (11)	NA	Q9SJK9	"Pentatricopeptide repeat-containing protein At2g36980, mitochondrial"	AT2G36980.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g34870.1	"pentatricopeptide, putative"	Medtr8g139760.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208570.1.S1_at	A	A2TS	POPTR_0010s02050	POPTR_0044s00290 (11)//POPTR_0010s02050 (11)	scaffold_10:2364300-2364559(-) (11)//scaffold_44:190337-190596(-) (11)	NA	NA	NA	AT5G18750.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os06g34440.1	"dnaJ domain containing protein, expressed"	Medtr2g025500.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.208572.1.S1_at	A	A1TS	POPTR_0010s08100	POPTR_0010s08100 (11)	scaffold_10:9038875-9039223(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208573.1.S1_at	A	A1TS	POPTR_0010s08080	POPTR_0010s08080 (11)	scaffold_10:9019392-9020770(+) (11)	NA	Q9LW60	Putative protein phosphatase 2C-like protein 44	AT3G23360.1	Protein phosphatase 2C family protein 	LOC_Os07g32380.1	"protein phosphatase 2C, putative, expressed"	Medtr2g093230.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208574.1.S1_at	A	A1TS	POPTR_0010s08070	POPTR_0010s08070 (11)	scaffold_10:9011161-9012539(-) (11)	NA	NA	NA	AT3G23370.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.208575.1.S1_at	A	A1TS	POPTR_0010s08020	POPTR_0010s08020 (11)	scaffold_10:8989434-8990385(-) (11)	NA	NA	NA	AT2G33460.1	ROP-interactive CRIB motif-containing protein 1 	LOC_Os04g53580.1	"P21-Rho-binding domain containing protein, putative, expressed"	Medtr2g093180.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208576.1.S1_at	A	A1TS	POPTR_0010s07980	POPTR_0010s07980 (11)	scaffold_10:8961174-8961710(-) (11)	NA	B5WWZ8	Long-chain-alcohol oxidase FAO1	AT3G23410.1	fatty alcohol oxidase 3 	LOC_Os02g40840.1	"alcohol oxidase, putative, expressed"	Medtr1g090220.1	Glucose-methanol-choline oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.208577.1.S1_at	A	A1TS	POPTR_0010s07930	POPTR_0010s07930 (11)	scaffold_10:8889046-8890293(-) (11)	NA	Q54EY2	Translation initiation factor eIF-2B subunit beta	AT3G07300.2	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os10g25320.2	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.208578.1.S1_at	A	A1MS	POPTR_0010s07910	POPTR_0010s07910 (9)	scaffold_10:8883863-8884656(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208579.1.S1_at	A	A1TS	POPTR_0010s07900	POPTR_0010s07900 (11)	scaffold_10:8878878-8879519(+) (11)	NA	NA	NA	AT2G33435.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g04520.4	"RNA recognition motif containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208580.1.S1_at	A	A1TS	POPTR_0010s07870	POPTR_0010s07870 (11)	scaffold_10:8849662-8850253(-) (11)	NA	Q9FNL7	Peptide transporter PTR3-A	AT5G46050.1	peptide transporter 3 	LOC_Os10g33210.1	"peptide transporter PTR3-A, putative, expressed"	Medtr1g090040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.208583.1.S1_x_at	A	A1TS	POPTR_0010s07750	POPTR_0010s07750 (11)	scaffold_10:8719083-8719667(-) (11)	NA	Q9VIM5	Probable actin-related protein 2/3 complex subunit 2	AT2G33385.2	actin-related protein C2B 	LOC_Os04g43290.1	"ARPC2B, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.208584.1.S1_at	A	A1TS	POPTR_0010s07740	POPTR_0010s07740 (11)	scaffold_10:8713351-8713797(+) (11)	NA	NA	NA	AT5G13890.3	Family of unknown function (DUF716)  	NA	NA	Medtr1g065150.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208585.1.S1_at	A	A1TS	POPTR_0010s07680	POPTR_0010s07680 (11)	scaffold_10:8686114-8686423(+) (11)	NA	NA	NA	AT2G33360.1	Protein of unknown function (DUF3527) 	LOC_Os03g04600.1	expressed protein	Medtr2g117390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208585.1.S1_s_at	A	A1TS	POPTR_0010s07680	POPTR_0010s07680 (11)	scaffold_10:8685703-8686447(+) (11)	NA	NA	NA	AT2G33360.1	Protein of unknown function (DUF3527) 	LOC_Os03g04600.1	expressed protein	Medtr2g117390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208586.1.S1_at	A	A1TS	POPTR_0010s07670	POPTR_0010s07670 (11)	scaffold_10:8672749-8673980(+) (11)	NA	NA	NA	AT1G04500.1	CCT motif family protein 	LOC_Os10g32900.1	"CCT motif family protein, expressed"	Medtr1g065110.1	"zinc finger CONSTANS-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208587.1.S1_at	A	A1TS	POPTR_0010s07620	POPTR_0010s07620 (11)	scaffold_10:8633866-8634324(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208588.1.S1_at	A	A1TS	POPTR_0010s07600	POPTR_0010s07600 (11)	scaffold_10:8623185-8624829(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr1g065810.1	RNA-binding region RNP-1 (RNA recognition motif); Nuclear transport factor 2 	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.208589.1.S1_at	A	A1TS	POPTR_0010s07590	POPTR_0010s07590 (10)	scaffold_10:8616931-8617646(+) (10)	NA	NA	NA	AT1G04530.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04710.1	expressed protein	Medtr1g087320.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208590.1.S1_at	A	A1TS	POPTR_0010s07580	POPTR_0010s07580 (11)	scaffold_10:8611808-8612369(-) (11)	NA	NA	NA	AT1G04540.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g57000.1	"C2 domain containing protein, putative, expressed"	Medtr1g065790.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208591.1.S1_at	A	A1TS	POPTR_0010s07570	POPTR_0010s07570 (9)	scaffold_10:8599631-8600212(-) (10)	NA	Q38831	Auxin-responsive protein IAA13	AT2G33310.3	auxin-induced protein 13 	LOC_Os02g57250.1	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr4g159330.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.208592.1.S1_at	A	A1TS	POPTR_0010s07550	POPTR_0010s07550 (10)	scaffold_10:8563442-8563796(-) (11)	NA	A5UZK7	DNA mismatch repair protein mutS	AT3G24320.1	MUTL protein homolog 1 	LOC_Os04g42784.1	"DNA mismatch repair protein, putative, expressed"	Medtr1g065690.1	"Excinuclease ABC, C subunit, N-terminal; MutS 1 protein "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity	GO:0005622|intracellular
PtpAffx.208594.1.S1_s_at	A	A1TS	POPTR_0010s07450	POPTR_0010s07450 (11)	scaffold_10:8495094-8495493(-) (11)	NA	Q4JL84	Transcription factor MYB59	AT4G13480.1	myb domain protein 79 	LOC_Os02g40530.1	"MYB family transcription factor, putative, expressed"	Medtr1g065650.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208595.1.S1_at	A	A1TS	POPTR_0010s07440	POPTR_0010s07440 (11)	scaffold_10:8487669-8488164(-) (11)	NA	Q9LTV8	Pentatricopeptide repeat-containing protein At3g12770	AT3G12770.1	mitochondrial editing factor  22 	LOC_Os07g25500.1	"pentatricopeptide, putative, expressed"	Medtr1g087400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208596.1.S1_at	A	A1TS	POPTR_0010s07430	POPTR_0010s07430 (11)	scaffold_10:8484633-8485201(+) (11)	NA	NA	NA	AT1G04570.1	Major facilitator superfamily protein 	LOC_Os07g24230.1	"integral membrane transporter family protein, putative, expressed"	Medtr3g009870.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208600.1.S1_at	A	A1TS	POPTR_0010s07390	POPTR_0010s07390 (11)	scaffold_10:8454048-8454922(-) (11)	NA	Q55669	Carboxyl-terminal-processing protease	AT4G17740.2	Peptidase S41 family protein 	LOC_Os02g57060.1	"OsCttP2 - Putative C-terminal processing peptidase homologue, expressed"	Medtr1g087140.1	"Peptidase S41A, C-terminal protease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.208601.1.S1_at	A	A1TS	POPTR_0010s07310	POPTR_0010s07310 (11)	scaffold_10:8421586-8422166(-) (11)	NA	Q0CBM7	Probable feruloyl esterase A	AT4G13550.1	triglyceride lipases;triglyceride lipases 	LOC_Os04g43030.1	"lipase class 3 family protein, putative, expressed"	Medtr1g065960.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.208602.1.S1_at	A	A1TS	POPTR_0010s07310	POPTR_0010s07310 (9)	scaffold_10:8415759-8419714(-) (11)	NA	Q0CBM7	Probable feruloyl esterase A	AT4G13550.1	triglyceride lipases;triglyceride lipases 	LOC_Os04g43030.1	"lipase class 3 family protein, putative, expressed"	Medtr1g065960.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.208603.1.S1_at	A	A1MS	POPTR_0010s07290	POPTR_0010s07290 (10)	scaffold_10:8397499-8398688(-) (10)	NA	Q9QYF3	Myosin-Va	AT5G43900.2	myosin 2 	LOC_Os02g57190.1	"Myosin head domain containing protein, expressed"	Medtr7g117740.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208604.1.S1_at	A	A1TS	POPTR_0010s07280	POPTR_0010s07280 (11)	scaffold_10:8379337-8380374(-) (11)	NA	O23024	Flavin-containing monooxygenase YUCCA3	AT1G04610.1	YUCCA 3 	LOC_Os04g03980.1	"flavin monooxygenase, putative, expressed"	Medtr7g117800.1	"Monooxygenase, FAD-binding; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208605.1.S1_at	A	A1TS	POPTR_0010s07270	POPTR_0010s07270 (11)	scaffold_10:8374121-8376485(+) (11)	NA	P46015	Uncharacterized protein all1601	AT1G04620.1	"coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family "	LOC_Os04g25400.2	"uncharacterized protein all1601, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208606.1.S1_at	A	A1TS	POPTR_0010s07230	POPTR_0010s07230 (11)	scaffold_10:8368460-8368597(+) (11)	NA	NA	NA	AT3G23980.1	BLISTER 	LOC_Os01g68380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208606.1.S1_s_at	A	A1TS	POPTR_0010s07230	POPTR_0010s07230 (10)	scaffold_10:8369463-8369561(+) (10)	NA	NA	NA	AT3G23980.1	BLISTER 	LOC_Os01g68380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208608.1.S1_s_at	A	A2TS	POPTR_0010s07060	POPTR_0010s07060 (11)//POPTR_0010s07080 (11)	scaffold_10:8295861-8295989(-) (11)//scaffold_10:8302171-8302299(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208609.1.S1_at	A	A1TS	POPTR_0010s06880	POPTR_0010s06880 (11)	scaffold_10:8126246-8126453(-) (11)	NA	Q8GUQ5	Brassinosteroid LRR receptor kinase	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os01g41770.1	"leucine rich repeat protein, putative, expressed"	Medtr2g021180.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.208610.1.S1_at	A	A1MS	POPTR_0010s06860	POPTR_0010s06860 (11)	scaffold_10:8117339-8117863(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208611.1.S1_at	A	A1TS	POPTR_0010s06830	POPTR_0010s06830 (11)	scaffold_10:8101261-8101816(+) (11)	NA	Q9C9N5	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830	AT1G67510.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g19480.1	"receptor protein kinase-like protein At4g34220 precursor, putative, expressed"	Medtr7g076330.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.208613.1.S1_at	A	A1TS	POPTR_0010s06800	POPTR_0010s06800 (10)	scaffold_10:8059075-8059715(+) (11)	NA	Q9CZP5	Mitochondrial chaperone BCS1	AT3G50930.1	cytochrome BC1 synthesis 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr5g020890.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.208614.1.S1_at	A	A1TS	POPTR_0010s06790	POPTR_0010s06790 (11)	scaffold_10:8056173-8056762(+) (11)	NA	NA	NA	AT1G67540.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208616.1.S1_at	A	A1TS	POPTR_0010s06760	POPTR_0010s06760 (11)	scaffold_10:8035107-8035385(-) (11)	NA	NA	NA	AT1G76340.1	golgi nucleotide sugar transporter 3 	LOC_Os03g11590.1	"integral membrane protein, putative, expressed"	Medtr1g126830.1	"Integral membrane protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208617.1.S1_at	A	A1TS	POPTR_0010s06740	POPTR_0010s06740 (11)	scaffold_10:8016711-8017125(-) (11)	NA	P16157	Ankyrin-1	AT5G14230.1	"CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). "	LOC_Os04g41280.1	"ankyrin repeat domain containing protein, expressed"	Medtr3g103520.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208618.1.S1_at	A	A1TS	POPTR_0010s06730	POPTR_0010s06730 (11)	scaffold_10:8005193-8007990(-) (11)	NA	A2A4P0	ATP-dependent RNA helicase DHX8	AT1G27900.1	RNA helicase family protein 	LOC_Os11g20554.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208619.1.S1_at	A	A1TS	POPTR_0010s06710	POPTR_0010s06710 (11)	scaffold_10:7994996-7995783(+) (11)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117330.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.20862.1.A1_at	A	A1TS	POPTR_0002s10390	POPTR_0002s10390 (11)	scaffold_2:7488389-7490644(+) (11)	NA	P93009	"Protein CutA, chloroplastic"	AT2G33740.1	"Nitrogen regulatory PII-like, alpha/beta "	LOC_Os03g08800.1	"CutA, chloroplast precursor, putative, expressed"	Medtr3g149010.1	CutA1 divalent ion tolerance protein 	GO:0010038|response to metal ion	NA	NA
PtpAffx.208620.1.S1_at	A	A1TS	POPTR_0010s06690	POPTR_0010s06690 (11)	scaffold_10:7975568-7976702(+) (11)	NA	NA	NA	AT1G67590.1	Remorin family protein 	LOC_Os03g02840.4	"remorin family protein, putative, expressed"	Medtr1g024260.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208621.1.S1_at	A	A1TS	POPTR_0010s06680	POPTR_0010s06680 (10)	scaffold_10:7969210-7970481(-) (11)	NA	NA	NA	AT1G24340.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os01g67550.1	"FAD binding domain containing protein, expressed"	Medtr3g103450.1	"Monooxygenase, FAD-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208622.1.S1_s_at	A	A1TS	POPTR_0010s06660	POPTR_0010s06660 (11)	scaffold_10:7961343-7963447(+) (11)	NA	Q0WVW7	ATP-dependent DNA helicase Q-like 5	AT1G27880.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os04g40970.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC233656_27.1	"Helicase, C-terminal AC233656.1 101170-108054 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.208623.1.S1_at	A	A1TS	POPTR_0010s06630	POPTR_0010s06630 (11)	scaffold_10:7925098-7925934(+) (11)	NA	NA	NA	AT1G27850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink). 	LOC_Os12g13670.2	expressed protein	Medtr3g103410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208624.1.S1_at	A	A1TS	POPTR_0010s06610	POPTR_0010s06610 (11)	scaffold_10:7908525-7908877(-) (11)	NA	NA	NA	AT5G14280.1	DNA-binding storekeeper protein-related 	NA	NA	Medtr4g136680.1	"TRAM, LAG1 and CLN8 homology "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208625.1.S1_at	A	A1TS	POPTR_0010s06600	POPTR_0010s06600 (10)	scaffold_10:7905915-7907488(+) (10)	NA	Q14181	DNA polymerase alpha subunit B	AT1G67630.1	DNA polymerase alpha 2 	LOC_Os12g13950.1	"POLA2 - Putative DNA polymerase alpha complex subunit, expressed"	Medtr3g103320.1	DNA polymerase epsilon subunit B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.208626.1.S1_at	A	A1TS	POPTR_0010s06590	POPTR_0010s06590 (11)	scaffold_10:7900660-7901606(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.1	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208627.1.S1_at	A	A1TS	POPTR_0010s06580	POPTR_0010s06580 (11)	scaffold_10:7897145-7897714(+) (11)	NA	B2RXR6	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B	AT3G01750.1	Ankyrin repeat family protein 	LOC_Os05g23320.2	expressed protein	Medtr3g103280.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208628.1.S1_at	A	A1TS	POPTR_0010s06570	POPTR_0010s06570 (11)	scaffold_10:7889224-7889699(+) (11)	NA	Q9M8W9	"Pentatricopeptide repeat-containing protein At3g04130, mitochondrial"	AT3G04130.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g38950.1	"PPR repeat containing protein, expressed"	Medtr1g149390.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208629.1.S1_at	A	A1TS	POPTR_0010s06540	POPTR_0010s06540 (11)	scaffold_10:7874766-7875658(+) (11)	NA	Q9LK64	ABC transporter C family member 3	AT3G13080.1	multidrug resistance-associated protein 3 	LOC_Os01g67580.1	"multidrug resistance-associated protein, putative, expressed"	Medtr5g034390.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.20863.1.A1_at	A	A2TS	POPTR_0005s06160	POPTR_0542s00220 (11)//POPTR_0005s06160 (11)	scaffold_5:4054564-4055609(+) (11)//scaffold_542:3159-4204(-) (11)//scaffold_542:11181-12225(-) (11)	POPTR_0542s00210 (6)	P25141	Alcohol dehydrogenase 1	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.208630.1.S1_at	A	A1TS	POPTR_0010s06540	POPTR_0010s06540 (11)	scaffold_10:7870194-7870804(+) (11)	NA	Q9LK64	ABC transporter C family member 3	AT3G13080.1	multidrug resistance-associated protein 3 	LOC_Os01g67580.1	"multidrug resistance-associated protein, putative, expressed"	Medtr5g034390.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.208631.1.S1_at	A	A1TS	POPTR_0010s06490	POPTR_0010s06490 (11)	scaffold_10:7838781-7838881(-) (11)	NA	NA	NA	AT1G67660.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os04g40900.1	"exonuclease, putative"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208631.1.S1_s_at	A	A1TS	POPTR_0010s06490	POPTR_0010s06490 (11)	scaffold_10:7838295-7838405(-) (11)	NA	NA	NA	AT1G67660.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os04g40900.1	"exonuclease, putative"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208632.1.S1_at	A	A1TS	POPTR_0010s06480	POPTR_0010s06480 (11)	scaffold_10:7836980-7837154(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208633.1.S1_at	A	A1TS	POPTR_0010s06470	POPTR_0010s06470 (11)	scaffold_10:7832784-7834303(+) (11)	NA	Q9LU91	F-box protein SKIP14	AT3G26000.1	Ribonuclease inhibitor 	LOC_Os04g40910.1	"OsFBX146 - F-box domain containing protein, expressed"	Medtr4g157480.1	"4Fe-4S ferredoxin, iron-sulfur binding; Cyclin-like F-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208634.1.S1_at	A	A1TS	POPTR_0010s06440	POPTR_0010s06440 (11)	scaffold_10:7803125-7807257(-) (11)	NA	Q9LU89	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os04g40860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.208634.1.S1_x_at	A	A1TS	POPTR_0010s06440	POPTR_0010s06440 (11)	scaffold_10:7803125-7807295(-) (11)	NA	Q9LU89	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os04g40860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.208635.1.S1_at	A	A1TS	POPTR_0010s06420	POPTR_0010s06420 (11)	scaffold_10:7801385-7802290(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208636.1.S1_at	A	A1TS	POPTR_0010s06400	POPTR_0010s06400 (10)	scaffold_10:7790424-7791013(+) (11)	NA	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	NA	NA	Medtr3g103100.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208637.1.S1_s_at	A	A1TS	POPTR_0010s06400	POPTR_0010s06400 (11)	scaffold_10:7790467-7790814(+) (11)	NA	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	NA	NA	Medtr3g103100.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208638.1.S1_s_at	A	A1TS	POPTR_0010s06370	POPTR_0010s06370 (11)	scaffold_10:7744854-7744929(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208639.1.S1_at	A	A1TS	POPTR_0010s06290	POPTR_0010s06290 (11)	scaffold_10:7703023-7703638(+) (11)	NA	Q9FXD6	Two-component response regulator ARR11	AT1G67710.1	response regulator 11 	LOC_Os01g67770.1	"two-component response regulator, putative, expressed"	Medtr3g102990.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.208640.1.S1_at	A	A1TS	POPTR_0010s06280	POPTR_0010s06280 (10)	scaffold_10:7694040-7694990(+) (10)	NA	NA	NA	AT1G13195.1	RING/U-box superfamily protein 	LOC_Os07g17400.2	"zinc finger, RING-type, putative, expressed"	Medtr2g014770.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208641.1.S1_at	A	A1TS	POPTR_0010s06270	POPTR_0010s06270 (11)	scaffold_10:7683661-7683819(-) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT1G67720.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	Medtr7g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.208642.1.S1_at	A	A1TS	POPTR_0010s06240	POPTR_0010s06240 (11)	scaffold_10:7656922-7660134(-) (11)	NA	Q3SXM5	Inactive hydroxysteroid dehydrogenase-like protein 1	AT1G24470.1	beta-ketoacyl reductase 2 	LOC_Os04g40730.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g102850.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.208643.1.S1_at	A	A1TS	POPTR_0010s06230	POPTR_0010s06230 (11)	scaffold_10:7637532-7638829(-) (11)	NA	Q3SXM5	Inactive hydroxysteroid dehydrogenase-like protein 1	AT1G67730.1	beta-ketoacyl reductase 1 	LOC_Os04g40730.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g102880.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.208644.1.S1_at	A	A1TS	POPTR_0010s06210	POPTR_0010s06210 (11)	scaffold_10:7621649-7622603(-) (11)	NA	NA	NA	AT4G00930.1	COP1-interacting protein 4.1 	LOC_Os04g40720.1	expressed protein	Medtr3g102840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208645.1.S1_at	A	A1TS	POPTR_0010s06180	POPTR_0010s06180 (11)	scaffold_10:7601162-7602631(-) (11)	NA	Q9FYL3	"ALBINO3-like protein 1, chloroplastic"	AT1G24490.1	OxaA/YidC-like membrane insertion protein 	LOC_Os03g62750.1	"inner membrane protein, putative, expressed"	Medtr3g102810.1	60 kDa inner membrane insertion protein 	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.208646.1.S1_at	A	A1TS	POPTR_0010s06130	POPTR_0010s06130 (11)	scaffold_10:7553475-7553523(-) (11)	NA	Q9SAF0	Oxysterol-binding protein-related protein 1D	AT1G13170.1	OSBP(oxysterol binding protein)-related protein 1D 	LOC_Os12g18770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g102710.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.208648.1.S1_at	A	A1TS	POPTR_0010s06110	POPTR_0010s06110 (11)	scaffold_10:7545755-7547850(-) (11)	NA	Q9V2L2	Putative 1-aminocyclopropane-1-carboxylate deaminase	AT3G26115.1	Pyridoxal-5'-phosphate-dependent enzyme family protein 	LOC_Os01g50060.1	"1-aminocyclopropane-1-carboxylate deaminase, putative, expressed"	Medtr3g102690.1	"catalytic/ pyridoxal phosphate binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208649.1.S1_at	A	A1TS	POPTR_0010s06090	POPTR_0010s06090 (11)	scaffold_10:7527865-7528858(-) (11)	NA	O65001	Protein terminal ear1	AT3G26120.1	terminal EAR1-like 1 	LOC_Os01g68000.1	"AML1, putative, expressed"	Medtr3g102670.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.208650.1.S1_s_at	A	A2TS	POPTR_0010s06000	POPTR_0010s06000 (11)//POPTR_0010s06040 (11)	scaffold_10:7440555-7441502(+) (11)//scaffold_10:7453488-7462318(+) (11)//scaffold_1619:3124-4075(+) (10)	POPTR_1619s00210 (6)	NA	NA	AT1G67790.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 208 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208652.1.S1_at	A	A1TS	POPTR_0010s06000	POPTR_0010s06000 (11)	scaffold_10:7441162-7441265(+) (11)//scaffold_10:7453865-7462573(+) (10)	NA	NA	NA	AT1G67790.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 208 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208653.1.S1_at	A	A1TS	POPTR_0010s05990	POPTR_0010s05990 (11)	scaffold_10:7428130-7428695(-) (11)	NA	Q9FMY1	Cytochrome P450 86B1	AT1G24540.1	"cytochrome P450, family 86, subfamily C, polypeptide 1 "	LOC_Os10g34480.1	"cytochrome P450, putative, expressed"	Medtr4g101000.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.208654.1.S1_at	A	A1TS	POPTR_0010s05980	POPTR_0010s05980 (11)	scaffold_10:7419726-7420368(-) (11)	NA	O23710	Proteasome subunit beta type-7-A	AT3G27430.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os05g09490.2	"peptidase, T1 family, putative, expressed"	Medtr7g032520.1	"Peptidase T1A, proteasome beta-subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208655.1.S1_s_at	A	A1TS	POPTR_0010s05930	POPTR_0010s05930 (11)	scaffold_10:7353098-7353539(-) (11)	NA	Q8RXG3	Mitogen-activated protein kinase kinase 5	AT1G18350.1	MAP kinase kinase 7 	LOC_Os03g50550.1	"STE_MEK_ste7_MAP2K.7 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr6g080600.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208656.1.S1_at	A	A1TS	POPTR_0010s05920	POPTR_0010s05920 (11)	scaffold_10:7345731-7347017(-) (11)	NA	NA	NA	AT1G24560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species: Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source: NCBI BLink). 	LOC_Os09g39200.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208657.1.S1_at	A	A1TS	POPTR_0010s05900	POPTR_0010s05900 (11)	scaffold_10:7336339-7336985(-) (11)	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os01g62080.2	"serine/threonine-protein kinase AFC1, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208658.1.S1_at	A	A1TS	POPTR_0010s05890	POPTR_0010s05890 (11)	scaffold_10:7334483-7335036(+) (11)	NA	NA	NA	AT3G26350.1	"LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). "	LOC_Os08g38580.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g104320.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.208659.1.S1_s_at	A	A1TS	POPTR_0010s05900	POPTR_0010s05900 (11)	scaffold_10:7336680-7337748(-) (11)	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os01g62080.2	"serine/threonine-protein kinase AFC1, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208660.1.S1_a_at	A	A1TS	POPTR_0010s05880	POPTR_0010s05880 (11)	scaffold_10:7330428-7330577(+) (11)	NA	Q9SAD9	"Pentatricopeptide repeat-containing protein At1g13040, mitochondrial"	AT1G13040.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g48850.2	"PPR repeat containing protein, expressed"	Medtr8g112280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208661.1.S1_at	A	A1TS	POPTR_0010s05870	POPTR_0010s05870 (9)	scaffold_10:7324726-7325811(+) (9)	NA	NA	NA	AT1G13030.1	sphere organelles protein-related 	LOC_Os12g19040.1	expressed protein	Medtr3g102490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208664.1.S1_at	A	A1TS	POPTR_0010s05810	POPTR_0010s05810 (11)	scaffold_10:7273909-7274295(-) (11)	NA	NA	NA	AT3G26400.1	eukaryotic translation initiation factor 4B1 	LOC_Os04g40400.1	"eukaryotic translation initiation factor 4B, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208664.1.S1_s_at	A	A1TS	POPTR_0010s05810	POPTR_0010s05810 (11)	scaffold_10:7273928-7275527(-) (11)	NA	NA	NA	AT3G26400.1	eukaryotic translation initiation factor 4B1 	LOC_Os04g40400.1	"eukaryotic translation initiation factor 4B, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208665.1.S1_at	A	A1TS	POPTR_0010s05780	POPTR_0010s05780 (11)	scaffold_10:7249539-7250058(-) (11)	NA	Q7Y1X1	Esterase	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39740.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208666.1.S1_at	A	A1TS	POPTR_0010s05770	POPTR_0010s05770 (11)	scaffold_10:7244136-7244698(+) (11)	NA	NA	NA	AT5G48270.1	Plant protein of unknown function (DUF868) 	LOC_Os01g68140.1	expressed protein	Medtr3g115140.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208667.1.S1_at	A	A1TS	POPTR_0010s05750	POPTR_0010s05750 (11)	scaffold_10:7233842-7234121(+) (11)	NA	NA	NA	AT1G67840.1	chloroplast sensor kinase 	LOC_Os12g19530.2	"ATP-binding region, ATPase-like domain-containing protein, putative, expressed"	NA	NA	NA	GO:0005524|ATP binding	NA
PtpAffx.208668.1.S1_x_at	A	A1TS	POPTR_0010s05730	POPTR_0010s05730 (10)	scaffold_10:7211892-7212176(-) (10)	NA	NA	NA	AT1G67850.2	Protein of unknown function (DUF707) 	LOC_Os01g68260.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208669.1.S1_at	A	A1TS	POPTR_0010s05690	POPTR_0010s05690 (9)	scaffold_10:7175984-7176303(-) (11)	NA	Q5KS50	Coleoptile phototropism protein 1	AT1G67900.3	Phototropic-responsive NPH3 family protein 	LOC_Os02g38120.1	"BTBN3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr5g034190.1	NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.208669.1.S1_s_at	A	A1TS	POPTR_0010s05690	POPTR_0010s05690 (11)	scaffold_10:7176133-7176563(-) (11)	NA	Q5KS50	Coleoptile phototropism protein 1	AT1G67900.3	Phototropic-responsive NPH3 family protein 	LOC_Os02g38120.1	"BTBN3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr5g034190.1	NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.208670.1.S1_at	A	A1TS	POPTR_0010s05660	POPTR_0010s05660 (11)	scaffold_10:7115957-7116575(+) (11)	NA	Q96NW7	Leucine-rich repeat-containing protein 7	AT1G12970.1	plant intracellular ras group-related LRR 3 	LOC_Os04g40080.1	"leucine rich repeat containing protein, expressed"	Medtr5g034280.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.208671.1.S1_at	A	A1TS	POPTR_0010s05630	POPTR_0010s05630 (11)	scaffold_10:7059206-7059695(-) (11)	NA	Q38954	"Inorganic phosphate transporter 2-1, chloroplastic"	AT3G26570.2	phosphate transporter 2;1 	LOC_Os02g38020.1	"inorganic phosphate transporter 2-1, chloroplast precursor, putative, expressed"	Medtr8g081830.1	Phosphate transporter 	GO:0006817|phosphate transport	GO:0005315|inorganic phosphate transmembrane transporter activity	GO:0016020|membrane
PtpAffx.208672.1.S1_at	A	A1TS	POPTR_0010s05625	POPTR_0010s05625 (11)	scaffold_10:7057709-7058157(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g034430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208673.1.S1_at	A	A1MS	POPTR_0010s05620	POPTR_0010s05620 (10)	scaffold_10:7056552-7057316(+) (10)	NA	NA	NA	AT1G70630.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os05g43810.1	conserved hypothetical protein	Medtr8g081860.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208674.1.S1_at	A	A1TS	POPTR_0010s05620	POPTR_0010s05620 (11)	scaffold_10:7054029-7054469(+) (11)	NA	NA	NA	AT1G70630.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os05g43810.1	conserved hypothetical protein	Medtr8g081860.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208675.1.S1_at	A	A1MS	POPTR_0010s05610	POPTR_0010s05610 (11)	scaffold_10:7050215-7051153(+) (11)	NA	NA	NA	AT1G70620.3	cyclin-related 	NA	NA	Medtr8g081860.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208676.1.S1_at	A	A1TS	POPTR_0010s05600	POPTR_0010s05600 (11)	scaffold_10:7041347-7041927(+) (11)	NA	Q8RY46	"ABC transporter B family member 26, chloroplastic"	AT1G70610.1	transporter associated with antigen processing protein 1 	LOC_Os01g68330.1	"antigen peptide transporter-like 1, chloroplast precursor, putative, expressed"	Medtr5g034450.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.208677.1.S1_at	A	A1TS	POPTR_0010s05570	POPTR_0010s05570 (11)	scaffold_10:7011366-7011515(-) (11)	NA	Q07123	Copper methylamine oxidase	AT2G42490.1	Copper amine oxidase family protein 	LOC_Os04g40040.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr3g114690.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.208678.1.S1_at	A	A1TS	POPTR_0010s05560	POPTR_0010s05560 (11)	scaffold_10:6992038-6992462(-) (11)	NA	NA	NA	AT3G26600.1	armadillo repeat only 4 	LOC_Os09g36550.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g034510.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208679.1.S1_at	A	A1TS	POPTR_0010s05550	POPTR_0010s05550 (11)	scaffold_10:6990414-6990730(+) (11)	NA	Q94C27	F-box protein At1g70590	AT1G70590.1	F-box family protein 	LOC_Os04g40030.1	"OsFBO17 - F-box and other domain containing protein, expressed"	Medtr5g034530.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208680.1.S1_at	A	A1TS	POPTR_0010s05500	POPTR_0010s05500 (11)	scaffold_10:6959024-6960332(+) (11)	NA	A6TM73	Anthranilate phosphoribosyltransferase	AT1G70570.1	"anthranilate phosphoribosyltransferase, putative "	LOC_Os02g03850.1	"glycosyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208681.1.S1_at	A	A1TS	POPTR_0010s05480	POPTR_0010s05480 (11)	scaffold_10:6950422-6951911(-) (11)	NA	NA	NA	AT1G10710.1	poor homologous synapsis 1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208682.1.S1_at	A	A1TS	POPTR_0010s05460	POPTR_0010s05460 (11)	scaffold_10:6917936-6918499(-) (11)	NA	Q9XIF0	Putative disease resistance protein At1g59780	AT1G59780.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028060.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.208683.1.S1_at	A	A1TS	POPTR_0010s05450	POPTR_0010s05450 (11)	scaffold_10:6916446-6917219(+) (11)	NA	Q9S7N2	Tryptophan aminotransferase 1	AT1G70560.1	tryptophan aminotransferase of Arabidopsis 1 	LOC_Os05g07720.1	"alliin lyase precursor, putative, expressed"	Medtr3g114550.1	"Allinase, C-terminal; ; "	NA	GO:0016846|carbon-sulfur lyase activity	NA
PtpAffx.208684.1.S1_at	A	A1TS	POPTR_0010s05420	POPTR_0010s05420 (11)	scaffold_10:6863034-6863680(-) (11)	NA	Q9Y5Z4	Heme-binding protein 2	AT1G17100.1	SOUL heme-binding family protein 	LOC_Os01g13420.1	"SOUL heme-binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208685.1.S1_at	A	A1TS	POPTR_0010s05390	POPTR_0010s05390 (11)	scaffold_10:6839457-6840449(+) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT3G26610.1	Pectin lyase-like superfamily protein 	LOC_Os01g44970.1	"polygalacturonase, putative, expressed"	Medtr5g035000.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.208687.1.S1_s_at	A	A2TS	POPTR_0008s12580	POPTR_0008s12580 (11)//POPTR_0010s05270 (11)	scaffold_10:6732773-6733030(+) (11)//scaffold_8:8146032-8146289(+) (11)	POPTR_0010s12660 (8)	Q8T7K0	ALG-2 interacting protein X	AT1G15130.1	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os10g35250.1	"vacuolar protein-sorting protein bro1, putative, expressed"	Medtr1g137820.1	"ALG2-interacting protein X, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208688.1.S1_at	A	A1TS	POPTR_0010s05250	POPTR_0010s05250 (11)	scaffold_10:6703622-6706316(+) (11)	NA	NA	NA	AT1G10660.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 155 Blast hits to 154 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g03790.1	expressed protein	Medtr5g035250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208689.1.S1_at	A	A1TS	POPTR_0010s05220	POPTR_0010s05220 (11)	scaffold_10:6684890-6686282(-) (11)	NA	Q9LDT3	Axial regulator YABBY 4	AT1G23420.1	Plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr5g035320.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208690.1.S1_at	A	A1TS	POPTR_0010s05160	POPTR_0010s05160 (11)	scaffold_10:6589816-6590758(+) (11)	NA	NA	NA	AT1G60460.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os06g49450.2	expressed protein	Medtr5g035490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208691.1.S1_at	A	A1TS	POPTR_0010s05150	POPTR_0010s05150 (11)	scaffold_10:6565435-6565607(-) (11)	NA	Q8L5Y9	Pantothenate kinase 2	AT4G32180.3	pantothenate kinase 2 	LOC_Os09g36270.2	"pantothenate kinase, putative, expressed"	Medtr3g113960.1	Eukaryotic pantothenate kinase 	GO:0015937|coenzyme A biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004594|pantothenate kinase activity	NA
PtpAffx.208691.1.S1_s_at	A	A1TS	POPTR_0010s05150	POPTR_0010s05150 (11)	scaffold_10:6565510-6566356(-) (11)	NA	Q8L5Y9	Pantothenate kinase 2	AT4G32180.3	pantothenate kinase 2 	LOC_Os09g36270.2	"pantothenate kinase, putative, expressed"	Medtr3g113960.1	Eukaryotic pantothenate kinase 	GO:0015937|coenzyme A biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004594|pantothenate kinase activity	NA
PtpAffx.208692.1.S1_at	A	A1TS	POPTR_0010s05140	POPTR_0010s05140 (11)	scaffold_10:6563431-6564404(+) (11)	NA	NA	NA	AT1G70480.2	Domain of unknown function (DUF220) 	LOC_Os09g15835.1	"OBP32pep, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208693.1.S1_s_at	A	A1TS	POPTR_0010s05130	POPTR_0010s05130 (11)	scaffold_10:6543402-6543805(-) (11)	NA	NA	NA	AT1G23530.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70470.1); Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	NA	NA	Medtr5g035510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208694.1.S1_at	A	A1TS	POPTR_0010s05090	POPTR_0010s05090 (11)	scaffold_10:6501196-6502745(+) (11)	NA	Q6NKP9	AMSH-like ubiquitin thiolesterase 2	AT1G10600.1	associated molecule with the SH3 domain of STAM 2 	LOC_Os01g47262.1	"AMSH-like protease, putative, expressed"	Medtr5g035570.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208695.1.S1_at	A	A1TS	POPTR_0010s05010	POPTR_0010s05010 (11)	scaffold_10:6323483-6324025(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208696.1.S1_at	A	A1TS	POPTR_0010s04980	POPTR_0010s04980 (11)	scaffold_10:6253443-6254542(+) (11)	NA	Q2PS26	Ubiquitin-like-specific protease 1D	AT1G60220.1	UB-like protease 1D 	LOC_Os06g29310.1	"ulp1 protease family protein, putative, expressed"	Medtr2g009590.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.208699.1.S1_at	A	A1TS	POPTR_0010s04960	POPTR_0010s04960 (11)	scaffold_10:6234970-6235464(-) (11)	NA	NA	NA	AT1G10380.1	Putative membrane lipoprotein 	LOC_Os06g25950.1	expressed protein	Medtr5g038340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208701.1.S1_at	A	A1TS	POPTR_0010s04940	POPTR_0010s04940 (11)	scaffold_10:6178007-6178563(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.208703.1.S1_at	A	A1TS	POPTR_0010s04910	POPTR_0010s04910 (11)	scaffold_10:6112534-6113273(-) (11)	NA	Q9XIE6	Phospholipid-transporting ATPase 3	AT1G59820.1	aminophospholipid ATPase 3 	LOC_Os05g01030.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr5g038220.1	"ATPase, E1-E2 type "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.208704.1.S1_at	A	A1TS	POPTR_0010s04900	POPTR_0010s04900 (11)	scaffold_10:6105177-6107130(-) (11)	NA	NA	NA	AT1G69970.2	CLAVATA3/ESR-RELATED 26 	NA	NA	Medtr5g038150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208705.1.S1_at	A	A1TS	POPTR_0010s04870	POPTR_0010s04870 (11)	scaffold_10:6047741-6048834(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g077130.1	"Zinc finger, CCHC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208707.1.S1_at	A	A1TS	POPTR_0010s04830	POPTR_0010s04830 (11)	scaffold_10:6007486-6008500(+) (11)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT1G27210.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208708.1.S1_at	A	A1TS	POPTR_0010s04820	POPTR_0010s04820 (11)	scaffold_10:5977840-5978695(-) (11)	NA	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.208709.1.S1_at	A	A1TS	POPTR_0010s04810	POPTR_0010s04810 (11)	scaffold_10:5973418-5973937(-) (11)	NA	NA	NA	AT1G23790.1	Plant protein of unknown function (DUF936) 	LOC_Os01g01890.1	expressed protein	Medtr5g035680.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208710.1.S1_at	A	A1TS	POPTR_0010s04800	POPTR_0010s04800 (11)	scaffold_10:5970157-5970557(+) (11)	NA	B9DFG3	"DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic"	AT1G70070.1	"DEAD/DEAH box helicase, putative "	LOC_Os02g50560.1	"DSHCT domain containing protein, expressed"	Medtr5g037740.1	"ATP-requiring DNA helicase RecQ; DSH, C-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.208711.1.S1_at	A	A1TS	POPTR_0010s04800	POPTR_0010s04800 (9)	scaffold_10:5964807-5966473(+) (10)	NA	B9DFG3	"DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic"	AT1G70070.1	"DEAD/DEAH box helicase, putative "	LOC_Os02g50560.1	"DSHCT domain containing protein, expressed"	Medtr5g037740.1	"ATP-requiring DNA helicase RecQ; DSH, C-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.208712.1.S1_at	A	A1TS	POPTR_0010s08270	POPTR_0010s08270 (11)	scaffold_10:9224383-9224981(-) (11)	NA	Q96303	Inorganic phosphate transporter 1-4	AT2G38940.1	phosphate transporter 1;4 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.208713.1.S1_at	A	A2TS	POPTR_0010s08280	POPTR_0010s08280 (11)//POPTR_0010s08260 (10)	scaffold_10:9205152-9205279(-) (10)//scaffold_10:9244827-9244967(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g089490.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208713.1.S1_s_at	A	A1TS	POPTR_0010s08280	POPTR_0010s08280 (11)	scaffold_10:9205826-9205991(-) (11)//scaffold_10:9245512-9245677(-) (11)	POPTR_0010s08260 (8)	NA	NA	NA	NA	NA	NA	Medtr1g089490.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208714.1.S1_at	A	A1TS	POPTR_0010s08300	POPTR_0010s08300 (11)	scaffold_10:9264102-9264695(-) (11)	NA	Q8LDC8	Ethylene-responsive transcription factor 1B	AT3G23240.1	ethylene response factor 1 	LOC_Os03g64260.1	"AP2 domain containing protein, expressed"	Medtr1g042600.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.208715.1.S1_at	A	A1TS	POPTR_0010s08310	POPTR_0010s08310 (11)	scaffold_10:9277403-9277540(+) (11)	NA	Q9LTC5	Ethylene-responsive transcription factor ERF098	AT3G23230.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g05590.1	"AP2 domain containing protein, expressed"	Medtr4g072660.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.208716.1.S1_at	A	A1TS	POPTR_0010s08330	POPTR_0010s08330 (11)	scaffold_10:9282089-9282262(-) (11)	NA	Q9LTC5	Ethylene-responsive transcription factor ERF098	AT3G23230.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g05590.1	"AP2 domain containing protein, expressed"	Medtr4g072870.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.208718.1.S1_at	A	A1TS	POPTR_0010s08380	POPTR_0010s08380 (10)	scaffold_10:9318699-9319284(-) (10)	NA	Q8H1S4	1-aminocyclopropane-1-carboxylate oxidase homolog 4	AT1G06650.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.208720.1.S1_at	A	A1TS	POPTR_0010s08410	POPTR_0010s08410 (11)	scaffold_10:9332797-9333071(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.208722.1.S1_at	A	A1TS	POPTR_0010s08480	POPTR_0010s08480 (11)	scaffold_10:9385103-9385616(+) (11)	NA	NA	NA	AT3G23160.1	Protein of unknown function (DUF668) 	LOC_Os04g08764.1	"avr9/Cf-9 rapidly elicited protein 137, putative, expressed"	Medtr7g034900.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208723.1.S1_at	A	A1TS	POPTR_0010s08490	POPTR_0010s08490 (11)	scaffold_10:9389848-9391596(+) (11)	NA	Q94CG2	Bet1-like SNARE 1-2	AT4G14455.1	Target SNARE coiled-coil domain protein 	LOC_Os02g57510.2	"SNARE domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208725.1.S1_at	A	A1TS	POPTR_0010s08520	POPTR_0010s08520 (11)	scaffold_10:9449337-9449703(-) (11)	NA	NA	NA	AT5G43540.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g14130.1	ZOS5-05 - C2H2 zinc finger protein	Medtr1g090030.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208726.1.S1_at	A	A1TS	POPTR_0010s08530	POPTR_0010s08530 (11)	scaffold_10:9462483-9462948(-) (11)	NA	Q38895	Transcriptional regulator SUPERMAN	AT3G23130.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os07g01180.1	"ZOS7-01 - C2H2 zinc finger protein, expressed"	Medtr2g091860.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208727.1.S1_at	A	A1TS	POPTR_0010s08540	POPTR_0010s08540 (11)	scaffold_10:9466168-9466659(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208728.1.S1_at	A	A1TS	POPTR_0010s08550	POPTR_0010s08550 (11)	scaffold_10:9468790-9469816(-) (11)	NA	Q570S7	Cellulose synthase-like protein G1	AT4G24010.1	cellulose synthase like G1 	LOC_Os09g30120.1	"CSLE1 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.208729.1.S1_at	A	A1TS	POPTR_0010s08560	POPTR_0010s08560 (11)	scaffold_10:9475063-9475725(-) (11)	NA	Q8VYR4	Cellulose synthase-like protein G2	AT4G24000.1	cellulose synthase like G2 	LOC_Os09g30130.1	"CSLE6 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.208730.1.S1_at	A	A1TS	POPTR_0010s08570	POPTR_0010s08570 (11)	scaffold_10:9484377-9484673(-) (11)	NA	O23305	FHA domain-containing protein At4g14490	AT4G14490.1	SMAD/FHA domain-containing protein  	LOC_Os03g51870.1	"FHA domain containing protein, putative, expressed"	Medtr8g081680.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208731.1.S1_at	A	A1TS	POPTR_0010s08580	POPTR_0010s08580 (11)	scaffold_10:9496824-9497469(+) (11)	NA	Q8RY18	MATH domain-containing protein At5g43560	AT1G04300.1	TRAF-like superfamily protein 	LOC_Os12g40520.1	"MATH domain containing protein, expressed"	Medtr1g064840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208732.1.S1_at	A	A1TS	POPTR_0010s08680	POPTR_0010s08680 (11)	scaffold_10:9565707-9566087(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208733.1.S1_at	A	A1TS	POPTR_0010s08760	POPTR_0010s08760 (11)	scaffold_10:9609218-9610370(-) (11)	NA	Q9FIX5	Transcription factor bHLH92	AT5G43650.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g53020.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.208734.1.S1_at	A	A1TS	POPTR_0010s08770	POPTR_0010s08770 (11)	scaffold_10:9614677-9615486(-) (11)	NA	Q6YYA3	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT3G23070.1	CRM family member 3A 	LOC_Os11g37990.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr1g089760.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.208735.1.S1_at	A	A1TS	POPTR_0010s08810	POPTR_0010s08810 (11)	scaffold_10:9632885-9633582(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208736.1.S1_at	A	A1TS	POPTR_0010s08820	POPTR_0010s08820 (11)	scaffold_10:9634976-9635331(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208737.1.S1_at	A	A1TS	POPTR_0010s08840	POPTR_0010s08840 (11)	scaffold_10:9638142-9640429(-) (11)	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117520.1	"zinc finger family protein {Arabid, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208738.1.S1_s_at	A	A1TS	POPTR_0010s08850	POPTR_0010s08850 (11)	scaffold_10:9645410-9646334(-) (11)	NA	Q304A0	Magnesium transporter MRS2-7	AT5G09690.2	magnesium transporter 7 	LOC_Os03g53110.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr1g117730.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208739.1.S1_at	A	A1TS	POPTR_0010s08920	POPTR_0010s08920 (10)	scaffold_10:9722382-9722415(-) (10)	NA	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g45750.1	"protein kinase domain containing protein, expressed"	Medtr5g045500.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208739.1.S1_s_at	A	A1TS	POPTR_0010s08920	POPTR_0010s08920 (11)	scaffold_10:9722536-9722584(-) (11)	NA	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g45750.1	"protein kinase domain containing protein, expressed"	Medtr5g045500.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208739.1.S1_x_at	A	A1TS	POPTR_0010s08920	POPTR_0010s08920 (10)	scaffold_10:9722303-9722626(-) (10)	NA	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g45750.1	"protein kinase domain containing protein, expressed"	Medtr5g045500.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208740.1.S1_at	A	A1MS	POPTR_0010s08920	POPTR_0010s08920 (11)	scaffold_10:9723669-9724054(-) (11)	NA	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g45750.1	"protein kinase domain containing protein, expressed"	Medtr5g045500.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208741.1.S1_at	A	A1TS	POPTR_0010s08940	POPTR_0010s08940 (11)	scaffold_10:9734455-9734969(+) (11)	NA	Q9LS88	Pentatricopeptide repeat-containing protein At3g23020	AT3G23020.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06710.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g111790.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208743.1.S1_at	A	A1TS	POPTR_0010s08950	POPTR_0010s08950 (11)	scaffold_10:9738706-9738995(-) (11)	NA	Q9SUL7	CBL-interacting serine/threonine-protein kinase 4	AT4G14580.1	CBL-interacting protein kinase 4 	LOC_Os03g43440.1	"CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	AC233668_30.1	"NAF; Serine/threonine protein kinase, active site AC233668.2 124906-121950 E EGN_Mt090430 200"	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208744.1.S1_s_at	A	A1TS	POPTR_0010s09090	POPTR_0010s09090 (11)	scaffold_10:9942726-9943241(-) (11)	NA	Q43117	"Pyruvate kinase isozyme A, chloroplastic"	AT3G22960.1	Pyruvate kinase family protein 	LOC_Os07g08340.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.208745.1.S1_at	A	A1TS	POPTR_0010s09100	POPTR_0010s09100 (11)	scaffold_10:9951170-9952653(-) (11)	NA	Q27450	Peptidyl-prolyl cis-trans isomerase 1	AT3G63400.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr3g136570.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.208746.1.S1_at	A	A1TS	POPTR_0010s09120	POPTR_0010s09120 (11)	scaffold_10:9964140-9965060(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208747.1.S1_at	A	A1TS	POPTR_0010s09130	POPTR_0010s09130 (11)	scaffold_10:9973684-9973872(+) (11)	NA	Q9LIK7	"Putative calcium-transporting ATPase 13, plasma membrane-type"	AT3G22910.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g015270.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.208747.1.S1_x_at	A	A1TS	POPTR_0010s09130	POPTR_0010s09130 (11)	scaffold_10:9973684-9973977(+) (11)	NA	Q9LIK7	"Putative calcium-transporting ATPase 13, plasma membrane-type"	AT3G22910.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g015270.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.208748.1.S1_at	A	A1TS	POPTR_0010s09170	POPTR_0010s09170 (11)	scaffold_10:10040813-10041943(+) (11)	NA	Q96449	Meiotic recombination protein DMC1 homolog	AT3G22880.1	DNA repair (Rad51) family protein 	LOC_Os11g04954.1	"DNA repair protein Rad51, putative, expressed"	Medtr8g133290.1	"AAA ATPase; Rad51, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20875.1.A1_at	A	A1TS	POPTR_0002s04170	POPTR_0002s04170 (9)	scaffold_2:2597564-2598477(-) (9)	NA	Q8H1S4	1-aminocyclopropane-1-carboxylate oxidase homolog 4	AT1G06650.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.208750.1.S1_at	A	A1TS	POPTR_0010s09200	POPTR_0010s09200 (11)	scaffold_10:10060913-10061092(-) (11)	NA	Q5ZLW3	Dymeclin	AT1G04200.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os01g56630.1	"dymeclin, putative, expressed"	Medtr4g072570.1	Protein of unknown function UPF0066 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208751.1.S1_at	A	A1TS	POPTR_0010s09210	POPTR_0010s09210 (11)	scaffold_10:10083423-10084505(-) (11)	NA	Q9LUH8	Heat stress transcription factor A-6b	AT3G22830.1	heat shock transcription factor  A6B 	LOC_Os03g58160.1	"heat stress transcription factor, putative, expressed"	Medtr3g139780.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.208752.1.S1_at	A	A1TS	POPTR_0010s09240	POPTR_0010s09240 (11)	scaffold_10:10104257-10104762(-) (11)	NA	Q9M7I7	"Chlorophyllase-2, chloroplastic"	AT5G43860.1	chlorophyllase 2 	LOC_Os10g28370.1	"chlorophyllase-2, chloroplast precursor, putative, expressed"	Medtr8g096370.1	Chlorophyllase 	GO:0015996|chlorophyll catabolic process	GO:0047746|chlorophyllase activity	NA
PtpAffx.208753.1.S1_at	A	A1TS	POPTR_0010s09270	POPTR_0010s09270 (11)	scaffold_10:10141300-10141420(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G14750.1	IQ-domain 19 	LOC_Os10g28420.1	"IQ calmodulin-binding motif family protein, putative"	AC235665_8.1	IQ calmodulin-binding region AC235665.2 31923-30953 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208753.1.S1_s_at	A	A1TS	POPTR_0010s09270	POPTR_0010s09270 (11)	scaffold_10:10141416-10141936(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G14750.1	IQ-domain 19 	LOC_Os10g28420.1	"IQ calmodulin-binding motif family protein, putative"	AC235665_8.1	IQ calmodulin-binding region AC235665.2 31923-30953 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208754.1.S1_at	A	A1TS	POPTR_0010s09280	POPTR_0010s09280 (11)	scaffold_10:10156550-10157240(+) (11)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.1	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.208754.1.S1_x_at	A	A1TS	POPTR_0010s09280	POPTR_0010s09280 (11)	scaffold_10:10156550-10157324(+) (11)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.1	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.208755.1.S1_at	A	A1TS	POPTR_0010s09310	POPTR_0010s09310 (11)	scaffold_10:10174713-10175261(+) (11)	NA	Q9LUI1	Leucine-rich repeat extensin-like protein 6	AT3G22800.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g58110.1	"uncharacterized protein At4g06744 precursor, putative, expressed"	Medtr4g158630.1	"leucine-rich repeat family protein, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.208756.1.S1_at	A	A1TS	POPTR_0010s09320	POPTR_0010s09320 (10)	scaffold_10:10183261-10183735(+) (11)	NA	Q9LUI1	Leucine-rich repeat extensin-like protein 6	AT3G22800.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g58110.1	"uncharacterized protein At4g06744 precursor, putative, expressed"	Medtr4g158630.1	"leucine-rich repeat family protein, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.208757.1.S1_at	A	A1TS	POPTR_0010s09380	POPTR_0010s09380 (11)	scaffold_10:10234043-10234616(+) (11)	NA	Q9LUJ2	Pentatricopeptide repeat-containing protein At3g22690	AT3G22690.2	"INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). "	LOC_Os03g27880.1	"tetratricopeptide-like helical, putative"	Medtr5g006710.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208758.1.S1_at	A	A1TS	POPTR_0010s09390	POPTR_0010s09390 (11)	scaffold_10:10237652-10238098(+) (11)	NA	Q9LUJ4	"Pentatricopeptide repeat-containing protein At3g22670, mitochondrial"	AT3G22670.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g53490.1	"PPR repeat containing protein, expressed"	Medtr5g006800.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208759.1.S1_at	A	A1TS	POPTR_0010s09400	POPTR_0010s09400 (11)	scaffold_10:10241078-10241519(+) (11)	NA	Q9LUJ4	"Pentatricopeptide repeat-containing protein At3g22670, mitochondrial"	AT3G22670.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g53490.1	"PPR repeat containing protein, expressed"	Medtr5g006800.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208762.1.S1_at	A	A1TS	POPTR_0010s09440	POPTR_0010s09440 (11)	scaffold_10:10277531-10278640(+) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT2G32010.2	CVP2 like 1 	LOC_Os03g57950.1	"type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed"	Medtr5g006980.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208763.1.S1_at	A	A1TS	POPTR_0010s09460	POPTR_0010s09460 (9)	scaffold_10:10286203-10287005(+) (10)	NA	Q9SPL5	Vicilin-like antimicrobial peptides 2-1	AT3G22640.1	cupin family protein 	LOC_Os03g46100.1	"cupin domain containing protein, expressed"	Medtr7g089440.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.208764.1.S1_at	A	A1TS	POPTR_0010s09470	POPTR_0010s09470 (11)	scaffold_10:10291821-10292353(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g043050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208765.1.S1_at	A	A1TS	POPTR_0010s09500	POPTR_0010s09500 (11)	scaffold_10:10300880-10301242(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G02100.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g55050.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g012420.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208766.1.S1_at	A	A1TS	POPTR_0010s09510	POPTR_0010s09510 (10)	scaffold_10:10302309-10303523(-) (11)	NA	NA	NA	AT4G14805.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	Medtr5g007040.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208767.1.S1_at	A	A1TS	POPTR_0010s09520	POPTR_0010s09520 (11)	scaffold_10:10304583-10305285(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208768.1.S1_at	A	A1TS	POPTR_0010s09530	POPTR_0010s09530 (11)	scaffold_10:10306376-10307319(-) (11)	NA	NA	NA	AT3G22620.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g57980.1	"LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g007080.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208769.1.S1_at	A	A1TS	POPTR_0010s09540	POPTR_0010s09540 (11)	scaffold_10:10309975-10311029(+) (11)	NA	Q9ZQI8	Non-specific lipid-transfer protein-like protein At2g13820	AT3G22600.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g07930.1	"LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g007090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20877.1.A1_at	A	A1TS	POPTR_0017s08700	POPTR_0017s08700 (11)	scaffold_17:7328877-7331772(-) (11)	NA	P33121	Long-chain-fatty-acid--CoA ligase 1	AT3G23790.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g62850.1	"AMP-binding enzyme, putative, expressed"	Medtr3g104670.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.208770.1.S1_s_at	A	A2TS	POPTR_0008s15490	POPTR_0008s15490 (11)//POPTR_0010s09550 (11)	scaffold_10:10314257-10314449(+) (11)//scaffold_8:10296802-10296994(-) (11)	NA	Q9ZQI8	Non-specific lipid-transfer protein-like protein At2g13820	AT3G22600.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g07870.1	"LTPL77 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr5g007090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208771.1.S1_at	A	A1TS	POPTR_0010s09560	POPTR_0010s09560 (11)	scaffold_10:10318202-10318502(-) (11)	NA	Q5ZLM0	Parafibromin	AT3G22590.1	PLANT HOMOLOGOUS TO PARAFIBROMIN 	LOC_Os03g46190.2	"parafibromin, putative, expressed"	Medtr5g007100.1	"RNA pol II accessory factor, Cdc73 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208772.1.S1_at	A	A1TS	POPTR_0010s09590	POPTR_0010s09590 (11)	scaffold_10:10342546-10343821(+) (11)	NA	NA	NA	AT2G32040.1	Major facilitator superfamily protein 	LOC_Os07g07654.1	"BT1 family protein, putative, expressed"	Medtr1g017050.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208774.1.S1_at	A	A1TS	POPTR_0010s09610	POPTR_0010s09610 (11)	scaffold_10:10364446-10364720(+) (11)	NA	NA	NA	AT1G05440.1	C-8 sterol isomerases 	LOC_Os03g53580.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208774.1.S1_s_at	A	A1TS	POPTR_0010s09610	POPTR_0010s09610 (11)	scaffold_10:10364773-10365222(+) (11)	NA	NA	NA	AT1G05440.1	C-8 sterol isomerases 	LOC_Os03g53580.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208775.1.S1_at	A	A1TS	POPTR_0010s09660	POPTR_0010s09660 (11)	scaffold_10:10379925-10381220(-) (11)	NA	NA	NA	AT1G05410.1	Protein of unknown function (DUF1423) 	LOC_Os03g53590.2	expressed protein	Medtr5g006500.1	"CDPK adapter protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208776.1.S1_at	A	A1TS	POPTR_0010s09670	POPTR_0010s09670 (11)	scaffold_10:10387079-10387380(-) (11)	NA	NA	NA	AT3G22520.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 717 Blast hits to 703 proteins in 179 species: Archae - 14; Bacteria - 134; Metazoa - 141; Fungi - 74; Plants - 209; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). "	LOC_Os03g53590.2	expressed protein	Medtr5g006500.1	"CDPK adapter protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208777.1.S1_at	A	A1TS	POPTR_0010s09690	POPTR_0010s09690 (11)	scaffold_10:10395644-10397079(+) (11)	NA	Q0WSH6	Pentatricopeptide repeat-containing protein At4g14850	AT4G14850.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g37330.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr5g095400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208778.1.S1_at	A	A1TS	POPTR_0010s09710	POPTR_0010s09710 (11)	scaffold_10:10400127-10400636(+) (11)	NA	P09444	Late embryogenesis abundant protein D-34	AT3G22490.1	Seed maturation protein 	LOC_Os03g06360.1	"late embryogenesis abundant protein D-34, putative, expressed"	Medtr1g086190.2	Seed maturation protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208780.1.S1_at	A	A1TS	POPTR_0010s09770	POPTR_0010s09770 (11)	scaffold_10:10421070-10421653(-) (11)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os03g06340.1	"XS domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208782.1.S1_s_at	A	A1TS	POPTR_0010s09810	POPTR_0010s09810 (11)	scaffold_10:10429828-10430294(-) (11)	NA	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208783.1.S1_at	A	A1TS	POPTR_0010s09810	POPTR_0010s09810 (11)	scaffold_10:10431475-10434609(-) (10)	POPTR_0008s15210 (6)	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208784.1.S1_at	A	A1TS	POPTR_0010s09830	POPTR_0010s09830 (11)	scaffold_10:10452302-10452860(-) (11)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208785.1.S1_at	A	A1TS	POPTR_0010s09870	POPTR_0010s09870 (11)	scaffold_10:10491033-10491519(-) (11)	NA	Q02439	"Putative glucan endo-1,3-beta-glucosidase GVI (Fragment)"	AT1G77780.1	Glycosyl hydrolase superfamily protein 	LOC_Os05g41610.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr7g092900.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.208786.1.S1_at	A	A1TS	POPTR_0010s09880	POPTR_0010s09880 (11)	scaffold_10:10494530-10494995(-) (11)	NA	Q9LHA8	Heat shock cognate 70 kDa protein 4	AT2G32120.2	heat-shock protein 70T-2 	LOC_Os03g11910.2	"DnaK family protein, putative, expressed"	Medtr5g006270.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208788.1.S1_at	A	A1TS	POPTR_0010s09900	POPTR_0010s09900 (11)	scaffold_10:10505302-10506011(+) (11)	NA	Q43077	Primary amine oxidase	AT1G31710.1	Copper amine oxidase family protein 	LOC_Os06g23114.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr1g132560.1	Copper amine oxidase; ; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.208790.1.S1_at	A	A1TS	POPTR_0010s09970	POPTR_0010s09970 (11)	scaffold_10:10559533-10560090(-) (11)	NA	Q9LUW0	"Lipoxygenase 5, chloroplastic"	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr1g132610.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.208791.1.S1_at	A	A1TS	POPTR_0010s10000	POPTR_0010s10000 (11)	scaffold_10:10588001-10588336(-) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208792.1.S1_at	A	A1TS	POPTR_0010s10000	POPTR_0010s10000 (11)	scaffold_10:10589528-10589747(-) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208793.1.S1_at	A	A1TS	POPTR_0010s10130	POPTR_0010s10130 (9)	scaffold_10:10706498-10708035(+) (11)	NA	Q4WVW4	Vacuolar protein 8	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.208794.1.S1_at	A	A1TS	POPTR_0010s10160	POPTR_0010s10160 (11)	scaffold_10:10722716-10723825(-) (11)	POPTR_0008s14930 (8)	P22082	Transcription regulatory protein SNF2	AT3G06010.1	Homeotic gene regulator 	LOC_Os05g05230.1	expressed protein	Medtr1g133020.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208795.1.S1_at	A	A1TS	POPTR_0010s10160	POPTR_0010s10160 (11)	scaffold_10:10727591-10727970(-) (11)	NA	P22082	Transcription regulatory protein SNF2	AT3G06010.1	Homeotic gene regulator 	LOC_Os05g05230.1	expressed protein	Medtr1g133020.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208796.1.S1_at	A	A1TS	POPTR_0010s10160	POPTR_0010s10160 (11)	scaffold_10:10729695-10731214(-) (11)	NA	P22082	Transcription regulatory protein SNF2	AT3G06010.1	Homeotic gene regulator 	LOC_Os05g05230.1	expressed protein	Medtr1g133020.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208797.1.S1_at	A	A1TS	POPTR_0010s10170	POPTR_0010s10170 (11)	scaffold_10:10739211-10742569(-) (11)	NA	Q5T280	Uncharacterized protein C9orf114	AT5G19300.1	"CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). "	LOC_Os04g17064.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208798.1.S1_at	A	A1TS	POPTR_0010s10180	POPTR_0010s10180 (11)	scaffold_10:10746234-10747889(-) (11)	NA	P46014	Protein phosphatase 2C 70	AT5G19280.1	kinase associated protein phosphatase 	LOC_Os07g11010.1	"protein Kinase-associated protein phosphatase, putative, expressed"	Medtr5g005970.1	Forkhead-associated; Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208798.1.S1_s_at	A	A1TS	POPTR_0010s10180	POPTR_0010s10180 (11)	scaffold_10:10745545-10746196(-) (11)	NA	P46014	Protein phosphatase 2C 70	AT5G19280.1	kinase associated protein phosphatase 	LOC_Os07g11010.1	"protein Kinase-associated protein phosphatase, putative, expressed"	Medtr5g005970.1	Forkhead-associated; Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208799.1.S1_at	A	A1TS	POPTR_0010s10210	POPTR_0010s10210 (11)	scaffold_10:10778843-10780297(-) (11)	NA	O22042	Mitogen-activated protein kinase kinase kinase 3	AT3G06030.1	NPK1-related protein kinase 3 	LOC_Os09g21510.1	"STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr7g139260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208800.1.S1_at	A	A1TS	POPTR_0010s10240	POPTR_0010s10240 (11)	scaffold_10:10802975-10803011(+) (11)	NA	Q4TU14	E3 ubiquitin-protein ligase RHF1A	AT4G14220.1	RING-H2 group F1A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208800.1.S1_s_at	A	A1TS	POPTR_0010s10240	POPTR_0010s10240 (11)	scaffold_10:10801966-10802479(+) (11)	NA	Q4TU14	E3 ubiquitin-protein ligase RHF1A	AT4G14220.1	RING-H2 group F1A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208801.1.S1_at	A	A1TS	POPTR_0010s10270	POPTR_0010s10270 (11)	scaffold_10:10817819-10820347(+) (11)	NA	NA	NA	AT5G20220.2	zinc knuckle (CCHC-type) family protein 	LOC_Os01g51710.1	"zinc knuckle domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.208802.1.S1_at	A	A1TS	POPTR_0010s10290	POPTR_0010s10290 (11)	scaffold_10:10831634-10832928(-) (11)	NA	Q6X5Y6	Ethylene-responsive transcription factor WRI1	AT3G54320.3	Integrase-type DNA-binding superfamily protein 	LOC_Os06g05340.1	AP2 domain containing protein	Medtr7g008760.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.208803.1.S1_at	A	A1TS	POPTR_0010s10310	POPTR_0010s10310 (11)	scaffold_10:10871893-10874496(+) (11)	NA	P48972	Myb-related protein B	AT2G02820.2	myb domain protein 88 	LOC_Os07g43420.1	"MYB family transcription factor, putative, expressed"	Medtr5g039940.2	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208804.1.S1_at	A	A1TS	POPTR_0010s10370	POPTR_0010s10370 (11)	scaffold_10:10897949-10898661(-) (11)	NA	O80605	Sucrose transport protein SUC3	AT2G02860.1	sucrose transporter 2 	LOC_Os02g58080.1	"transporter, major facilitator family, putative, expressed"	Medtr8g146560.1	"General substrate transporter; Sucrose/H+ symporter, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208805.1.S1_at	A	A1TS	POPTR_0010s10390	POPTR_0010s10390 (10)	scaffold_10:10916109-10916283(+) (11)	NA	P04781	"Chlorophyll a-b binding protein 22R, chloroplastic"	AT2G05100.1	photosystem II light harvesting complex gene 2.1 	LOC_Os09g17740.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g104980.1	Chlorophyll A-B binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208806.1.S1_at	A	A1TS	POPTR_0010s10410	POPTR_0010s10410 (10)	scaffold_10:10925163-10925859(-) (10)	NA	NA	NA	AT2G02910.1	Protein of unknown function (DUF616) 	LOC_Os11g09170.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	AC146568_8.1	Protein of unknown function DUF616 AC146568.11 42302-43568 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208807.1.S1_at	A	A1TS	POPTR_0010s10420	POPTR_0010s10420 (11)	scaffold_10:10929864-10930237(-) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.208807.1.S1_x_at	A	A1TS	POPTR_0010s10420	POPTR_0010s10420 (11)	scaffold_10:10929864-10932681(-) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.208809.1.S1_s_at	A	A1TS	POPTR_0010s10480	POPTR_0010s10480 (11)	scaffold_10:10974711-10975442(-) (11)	NA	P49756	RNA-binding protein 25	AT1G60200.1	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 	LOC_Os08g32100.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr5g035770.1	"Splicing factor PWI; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	GO:0003676|nucleic acid binding	NA
PtpAffx.208809.1.S1_x_at	A	A1TS	POPTR_0010s10480	POPTR_0010s10480 (11)	scaffold_10:10974801-10975442(-) (11)	NA	P49756	RNA-binding protein 25	AT1G60200.1	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 	LOC_Os08g32100.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr5g035770.1	"Splicing factor PWI; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	GO:0003676|nucleic acid binding	NA
PtpAffx.208810.1.S1_at	A	A1TS	POPTR_0010s10500	POPTR_0010s10500 (11)	scaffold_10:10996804-10996975(+) (11)	NA	NA	NA	AT1G10522.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g21460.1	expressed protein	Medtr8g073670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208811.1.S1_s_at	A	A1TS	POPTR_0010s10515	POPTR_0010s10515 (11)	scaffold_10:11008318-11008495(+) (11)	NA	P64956	Uncharacterized protein Mb2253c	AT1G24090.1	RNase H family protein 	LOC_Os08g08050.1	"retrotransposon protein, putative, unclassified"	Medtr2g120570.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	GO:0016234|inclusion body
PtpAffx.208812.1.S1_at	A	A1TS	POPTR_0010s10530	POPTR_0010s10530 (11)	scaffold_10:11039725-11040493(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g073660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208814.1.S1_s_at	A	A1TS	POPTR_0010s10580	POPTR_0010s10580 (11)	scaffold_10:11079295-11079470(+) (11)	NA	NA	NA	AT1G24040.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os04g39140.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr5g036340.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.208815.1.S1_at	A	A1TS	POPTR_0010s10610	POPTR_0010s10610 (11)	scaffold_10:11093332-11094084(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G70260.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os03g05530.1	"nodulin, putative, expressed"	Medtr3g124850.1	"nodulin MtN21 family protein, related "	NA	NA	GO:0016020|membrane
PtpAffx.208816.1.S1_at	A	A1MS	POPTR_0010s10640	POPTR_0010s10640 (9)	scaffold_10:11104686-11105545(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208817.1.S1_at	A	A1TS	POPTR_0010s10660	POPTR_0010s10660 (11)	scaffold_10:11121041-11123466(-) (11)	NA	O04630	"Threonyl-tRNA synthetase, mitochondrial"	AT5G26830.1	Threonyl-tRNA synthetase 	LOC_Os08g19850.1	"threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed"	Medtr5g035990.1	"tRNA synthetase, class II (G, H, P and S); Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.208818.1.S1_at	A	A1TS	POPTR_0010s10670	POPTR_0010s10670 (11)	scaffold_10:11133855-11133964(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g61700.1	ATP-dependent Clp protease adaptor protein ClpS containing protein	NA	NA	GO:0030163|protein catabolic process||GO:0009057|macromolecule catabolic process	NA	NA
PtpAffx.208818.1.S1_s_at	A	A1TS	POPTR_0010s10670	POPTR_0010s10670 (9)	scaffold_10:11135153-11136319(-) (9)	NA	NA	NA	NA	NA	LOC_Os01g61700.1	ATP-dependent Clp protease adaptor protein ClpS containing protein	NA	NA	GO:0030163|protein catabolic process||GO:0009057|macromolecule catabolic process	NA	NA
PtpAffx.208819.1.S1_at	A	A1TS	POPTR_0010s10680	POPTR_0010s10680 (11)	scaffold_10:11139594-11140358(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208820.1.S1_at	A	A1TS	POPTR_0010s10700	POPTR_0010s10700 (10)	scaffold_10:11143962-11144234(-) (10)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT4G21200.1	gibberellin 2-oxidase 8 	LOC_Os04g44150.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr5g005780.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.208821.1.S1_at	A	A1TS	POPTR_0010s10710	POPTR_0010s10710 (11)	scaffold_10:11161596-11163136(-) (11)	NA	NA	NA	AT1G60670.2	Protein of unknown function (DUF3755) 	LOC_Os02g42020.2	expressed protein	Medtr3g025420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208822.1.S1_at	A	A1TS	POPTR_0010s10730	POPTR_0010s10730 (11)	scaffold_10:11178432-11178835(-) (11)	NA	O48788	Probable inactive receptor kinase At2g26730	AT1G10850.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g58390.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g118800.1	Formate C-acetyltransferase glycine radical; Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208823.1.S1_at	A	A1TS	POPTR_0010s10760	POPTR_0010s10760 (11)	scaffold_10:11190983-11191231(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208824.1.S1_at	A	A1TS	POPTR_0010s10770	POPTR_0010s10770 (11)	scaffold_10:11199933-11200201(-) (11)	NA	NA	NA	AT3G11920.1	glutaredoxin-related 	LOC_Os10g34170.1	"glutaredoxin domain containing protein, putative, expressed"	AC233100_25.1	Protein of unknown function DUF547 AC233100.6 89976-92470 E EGN_Mt090430 200	GO:0007242|intracellular signaling cascade||GO:0045454|cell redox homeostasis||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.208825.1.S1_at	A	A1TS	POPTR_0010s10810	POPTR_0010s10810 (11)	scaffold_10:11216925-11221535(-) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os01g62870.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.2	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.208826.1.S1_at	A	A1TS	POPTR_0010s10870	POPTR_0010s10870 (10)	scaffold_10:11267458-11267954(-) (10)	NA	P0C894	Putative pentatricopeptide repeat-containing protein At2g02150	AT2G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g36910.1	"pentatricopeptide, putative"	Medtr4g157210.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208827.1.S1_at	A	A1TS	POPTR_0010s10880	POPTR_0010s10880 (11)	scaffold_10:11273670-11274173(+) (11)	NA	NA	NA	AT3G18420.1	Protein prenylyltransferase superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208828.1.S1_at	A	A1TS	POPTR_0010s10910	POPTR_0010s10910 (11)	scaffold_10:11286735-11288004(-) (11)	NA	Q5REY7	UBX domain-containing protein 7	AT1G14570.1	UBX domain-containing protein 	LOC_Os04g57520.1	"UBX domain-containing protein, putative, expressed"	AC229689_1.1	UBX; UAS; Thioredoxin-like fold AC229689.5 4995-12311 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208829.1.S1_at	A	A2TS	POPTR_0010s10920	POPTR_0010s10920 (11)//POPTR_1321s00200 (10)	scaffold_10:11303896-11304225(+) (11)//scaffold_1321:99-440(-) (10)	NA	Q9FYJ6	Transcription factor bHLH111	AT1G31050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g28890.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208830.1.S1_s_at	A	A1TS	POPTR_0010s10920	POPTR_0010s10920 (10)	scaffold_10:11304746-11305665(+) (11)	NA	Q9FYJ6	Transcription factor bHLH111	AT1G31050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g28890.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208831.1.S1_at	A	A1TS	POPTR_0010s10930	POPTR_0010s10930 (11)	scaffold_10:11315131-11315373(+) (11)	NA	Q9H4L7	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	AT2G02090.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os04g47830.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g019900.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208832.1.S1_at	A	A1TS	POPTR_0010s10960	POPTR_0010s10960 (11)	scaffold_10:11369415-11369795(+) (11)	NA	NA	NA	AT1G75010.1	GTP binding 	LOC_Os09g38330.1	"MORN repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208832.1.S1_x_at	A	A1TS	POPTR_0010s10960	POPTR_0010s10960 (11)	scaffold_10:11369415-11369795(+) (11)	NA	NA	NA	AT1G75010.1	GTP binding 	LOC_Os09g38330.1	"MORN repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208835.1.S1_at	A	A1TS	POPTR_0010s11020	POPTR_0010s11020 (9)	scaffold_10:11414878-11415460(+) (10)	NA	Q7FAE1	Momilactone A synthase	AT3G42960.1	TAPETUM 1 	LOC_Os03g59610.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr4g108360.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.208836.1.S1_at	A	A1TS	POPTR_0010s11070	POPTR_0010s11070 (11)	scaffold_10:11447589-11448373(+) (11)	NA	Q07346	Glutamate decarboxylase	AT2G02010.1	glutamate decarboxylase 4 	LOC_Os03g13300.1	"glutamate decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.208837.1.S1_at	A	A1TS	POPTR_0010s11100	POPTR_0010s11100 (11)	scaffold_10:11467247-11467812(+) (11)	NA	Q67UC7	Probable potassium transporter 17	AT2G30070.1	potassium transporter 1 	LOC_Os09g27580.2	"potassium transporter, putative, expressed"	Medtr7g130210.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.208838.1.S1_at	A	A1TS	POPTR_0010s11140	POPTR_0010s11140 (11)	scaffold_10:11489106-11489322(+) (11)	NA	O15321	Transmembrane 9 superfamily member 1	AT2G01970.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208839.1.S1_at	A	A1TS	POPTR_0010s11170	POPTR_0010s11170 (11)	scaffold_10:11517116-11517675(-) (11)	NA	Q9C810	PHD finger protein At1g33420	AT5G22260.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os09g27620.1	"PHD-finger domain containing protein, putative"	Medtr5g044070.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208840.1.S1_at	A	A1MS	POPTR_0010s11190	POPTR_0010s11190 (10)	scaffold_10:11529765-11529996(-) (10)	NA	Q9FRH3	Putative clathrin assembly protein At1g25240	AT1G25240.1	ENTH/VHS/GAT family protein 	LOC_Os08g36410.1	ANTH domain containing protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208841.1.S1_at	A	A1TS	POPTR_0010s11220	POPTR_0010s11220 (10)	scaffold_10:11541941-11542637(+) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT2G01900.1	DNAse I-like superfamily protein 	LOC_Os03g13520.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr1g046590.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208842.1.S1_at	A	A1TS	POPTR_0010s11230	POPTR_0010s11230 (11)	scaffold_10:11548588-11549903(+) (11)	NA	Q9C9X3	Annexin D5	AT1G68090.1	annexin 5 	LOC_Os09g23160.1	"annexin, putative, expressed"	Medtr4g154520.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.208843.1.S1_at	A	A1TS	POPTR_0010s11240	POPTR_0010s11240 (10)	scaffold_10:11552256-11553225(+) (10)	NA	Q9SCX8	Purple acid phosphatase 17	AT3G17790.1	purple acid phosphatase 17 	LOC_Os03g13540.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr4g154540.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.208844.1.S1_at	A	A1TS	POPTR_0010s11250	POPTR_0010s11250 (11)	scaffold_10:11556509-11559718(+) (11)	NA	NA	NA	AT1G03280.1	"Transcription factor TFIIE, alpha subunit "	LOC_Os08g25460.1	"transcription initiation factor, putative, expressed"	Medtr8g092930.1	"Transcription factor TFIIE, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	NA
PtpAffx.208845.1.S1_at	A	A1TS	POPTR_0010s11260	POPTR_0010s11260 (11)	scaffold_10:11562326-11562604(-) (11)	NA	NA	NA	AT1G14710.2	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g13560.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208846.1.S1_at	A	A1TS	POPTR_0010s11270	POPTR_0010s11270 (11)	scaffold_10:11573450-11573847(+) (11)	NA	P48261	Anthranilate synthase component II	AT1G25220.1	anthranilate synthase beta subunit 1 	LOC_Os03g50880.1	"class I glutamine amidotransferase, putative, expressed"	Medtr1g121260.1	Anthranilate synthase component II/delta crystallin 	NA	GO:0003824|catalytic activity	NA
PtpAffx.208846.1.S1_x_at	A	A1TS	POPTR_0010s11270	POPTR_0010s11270 (11)	scaffold_10:11572700-11575803(+) (11)	NA	P48261	Anthranilate synthase component II	AT1G25220.1	anthranilate synthase beta subunit 1 	LOC_Os03g50880.1	"class I glutamine amidotransferase, putative, expressed"	Medtr1g121260.1	Anthranilate synthase component II/delta crystallin 	NA	GO:0003824|catalytic activity	NA
PtpAffx.208847.1.S1_at	A	A1MS	POPTR_0010s11300	POPTR_0010s11300 (10)	scaffold_10:11611610-11611958(+) (10)	NA	NA	NA	NA	NA	LOC_Os10g02920.1	"cytochrome b561, putative, expressed"	CU633465_7.1	Cytochrome b561 / ferric reductase transmembrane CU633465.7 43513-41380 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208848.1.S1_at	A	A1TS	POPTR_0010s11320	POPTR_0010s11320 (11)	scaffold_10:11613483-11616432(-) (11)	NA	Q94B71	Protein OBERON 3	AT1G14740.1	Protein of unknown function (DUF1423) 	LOC_Os03g13590.1	"potyvirus VPg interacting protein, putative, expressed"	CU633465_5.1	Arabidopsis thaliana 130.7kDa hypothetical protein CU633465.7 34422-38324 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208849.1.S1_at	A	A1TS	POPTR_0010s11350	POPTR_0010s11350 (10)	scaffold_10:11655392-11655695(+) (10)	NA	Q9C5U0	Histidine kinase 4	AT2G01830.1	CHASE domain containing histidine kinase protein 	LOC_Os03g50860.1	"histidine kinase, putative, expressed"	Medtr4g156220.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.20885.1.S1_a_at	A	A1TS	POPTR_0016s12500	POPTR_0016s12500 (11)	scaffold_16:11955694-11956080(+) (11)	NA	Q9STZ2	SelT-like protein	AT3G47300.1	SELT-like protein precursor 	LOC_Os01g61580.3	"selT-like protein precursor, putative, expressed"	Medtr4g013030.1	SelT/selW/selH selenoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20885.1.S1_at	A	A1TS	POPTR_0016s12500	POPTR_0016s12500 (11)	scaffold_16:11955669-11956318(+) (11)	NA	Q9STZ2	SelT-like protein	AT3G47300.1	SELT-like protein precursor 	LOC_Os01g61580.3	"selT-like protein precursor, putative, expressed"	Medtr4g013030.1	SelT/selW/selH selenoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208850.1.S1_at	A	A1TS	POPTR_0010s11380	POPTR_0010s11380 (11)	scaffold_10:11677152-11677737(-) (11)	NA	Q9SA65	Putative clathrin assembly protein At1g03050	AT1G03050.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr4g156350.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.208851.1.S1_at	A	A1TS	POPTR_0010s11400	POPTR_0010s11400 (11)	scaffold_10:11690901-11691555(+) (11)	NA	Q550C1	Protein TAPT1 homolog	AT1G67960.1	"CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). "	LOC_Os03g50730.1	"transmembrane anterior posterior transformation 1, putative, expressed"	Medtr3g115210.1	"Protein of unknown function DUF747, CMV receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208852.1.S1_at	A	A1TS	POPTR_0010s11410	POPTR_0010s11410 (11)	scaffold_10:11697034-11697899(+) (11)	NA	NA	NA	AT2G01818.1	PLATZ transcription factor family protein 	LOC_Os02g09070.1	"zinc-binding protein, putative, expressed"	Medtr4g156490.1	"Zinc finger, B-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208853.1.S1_at	A	A1TS	POPTR_0010s11420	POPTR_0010s11420 (11)	scaffold_10:11702640-11704816(+) (11)	NA	NA	NA	AT4G17720.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g50560.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g156510.1	RNA-binding region RNP-1 (RNA recognition motif); Aldo/keto reductase 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.208854.1.S1_at	A	A1TS	POPTR_0010s11430	POPTR_0010s11430 (11)	scaffold_10:11706699-11708405(-) (11)	NA	Q1PFW3	Cyclin-SDS	AT1G14750.1	Cyclin family protein 	LOC_Os03g12414.2	"cyclin, putative, expressed"	Medtr1g012960.1	"TonB box, N-terminal; Cyclin-like; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208855.1.S1_at	A	A1TS	POPTR_0010s11440	POPTR_0010s11440 (11)	scaffold_10:11715671-11716956(+) (11)	NA	NA	NA	AT1G16020.2	Protein of unknown function (DUF1712) 	LOC_Os08g33076.1	"myrosinase precursor, putative, expressed"	Medtr4g156530.1	"myrosinase precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208856.1.S1_at	A	A1TS	POPTR_0010s11450	POPTR_0010s11450 (11)	scaffold_10:11717644-11717847(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g33076.1	"myrosinase precursor, putative, expressed"	Medtr4g156530.1	"myrosinase precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208857.1.S1_at	A	A1TS	POPTR_0010s11470	POPTR_0010s11470 (11)	scaffold_10:11725042-11725609(+) (11)	NA	P47818	Protein CCC1	AT2G01770.1	vacuolar iron transporter 1 	LOC_Os04g38940.1	"integral membrane protein, putative, expressed"	Medtr4g156680.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208859.1.S1_at	A	A1TS	POPTR_0010s11510	POPTR_0010s11510 (10)	scaffold_10:11750327-11751835(+) (10)	NA	Q94AH8	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6"	AT1G68020.2	UDP-Glycosyltransferase / trehalose-phosphatase family protein 	LOC_Os09g23350.1	"trehalose synthase, putative, expressed"	Medtr4g156760.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.208860.1.S1_at	A	A1TS	POPTR_0010s11540	POPTR_0010s11540 (11)	scaffold_10:11767309-11767946(+) (11)	NA	Q9LS10	Probable S-adenosylmethionine-dependent methyltransferase At5g38100	AT1G68040.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g57080.1	"jasmonate O-methyltransferase, putative"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208861.1.S1_at	A	A2TS	POPTR_0010s11560	POPTR_0010s11560 (11)//POPTR_0303s00220 (9)	scaffold_10:11772424-11773004(-) (11)//scaffold_303:18877-19457(+) (9)	NA	Q0DXS3	Probable RNA-dependent RNA polymerase 1	AT1G14790.1	RNA-dependent RNA polymerase 1 	LOC_Os02g50330.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125360.1	RNA-binding region RNP-1 (RNA recognition motif); RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208862.1.S1_s_at	A	A2TS	POPTR_0010s11570	POPTR_0303s00210 (11)//POPTR_0010s11570 (11)	scaffold_10:11782775-11783052(-) (11)//scaffold_303:8439-8717(+) (11)	NA	P49420	Aspartate-semialdehyde dehydrogenase	AT1G14810.1	semialdehyde dehydrogenase family protein 	LOC_Os03g55280.1	"semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed"	Medtr4g156590.1	"Aspartate-semialdehyde dehydrogenase, microbial "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016620|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0046983|protein dimerization activity"	GO:0005737|cytoplasm
PtpAffx.208863.1.S1_at	A	A1TS	POPTR_0010s11620	POPTR_0010s11620 (10)	scaffold_10:11812022-11812675(-) (11)	NA	Q8L899	Systemin receptor SR160	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os01g41960.1	"retrotransposon protein, putative, unclassified"	Medtr2g021260.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.208864.1.S1_at	A	A1TS	POPTR_0010s11650	POPTR_0010s11650 (10)	scaffold_10:11852476-11853054(+) (11)	NA	Q8GUU3	Cleavage and polyadenylation specificity factor subunit 3-II	AT2G01730.1	cleavage and polyadenylation specificity factor 73 kDa subunit-II 	LOC_Os09g23380.1	"metallo-beta-lactamase, putative, expressed"	Medtr2g006480.1	Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208865.1.S1_at	A	A1TS	POPTR_0010s11660	POPTR_0010s11660 (11)	scaffold_10:11857880-11861931(+) (11)	NA	Q8GUU2	E3 ubiquitin protein ligase RIE1	AT1G68070.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os02g45240.1	"zinc finger family protein, putative, expressed"	Medtr4g157080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208865.1.S1_x_at	A	A1TS	POPTR_0010s11660	POPTR_0010s11660 (11)	scaffold_10:11857880-11861931(+) (11)	NA	Q8GUU2	E3 ubiquitin protein ligase RIE1	AT1G68070.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os02g45240.1	"zinc finger family protein, putative, expressed"	Medtr4g157080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208866.1.S1_at	A	A1TS	POPTR_0010s11670	POPTR_0010s11670 (11)	scaffold_10:11864997-11867251(-) (11)	NA	P0C2G7	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	AT1G24880.1	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein 	LOC_Os03g12320.1	"UDP-3-O- N-acetylglucosamine deacetylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0009245|lipid A biosynthetic process	GO:0008759|UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity	NA
PtpAffx.208867.1.S1_at	A	A1TS	POPTR_0010s11680	POPTR_0010s11680 (11)	scaffold_10:11868478-11871454(+) (11)	NA	NA	NA	AT1G14850.1	nucleoporin 155 	LOC_Os06g20090.1	"NUP155, putative, expressed"	Medtr4g157110.1	Non-repetitive/WGA-negative nucleoporin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208868.1.S1_at	A	A1TS	POPTR_0010s11700	POPTR_0010s11700 (11)	scaffold_10:11886807-11887096(+) (11)	NA	Q68F38	Protein VAC14 homolog	AT2G01690.1	ARM repeat superfamily protein 	LOC_Os03g12300.1	"HEAT repeat family protein, putative, expressed"	Medtr4g157120.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208868.1.S1_s_at	A	A1TS	POPTR_0010s11700	POPTR_0010s11700 (11)	scaffold_10:11885211-11888531(+) (11)	NA	Q68F38	Protein VAC14 homolog	AT2G01690.1	ARM repeat superfamily protein 	LOC_Os03g12300.1	"HEAT repeat family protein, putative, expressed"	Medtr4g157120.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208870.1.S1_s_at	A	A1TS	POPTR_0010s11740	POPTR_0010s11740 (11)	scaffold_10:11916078-11916376(+) (11)	NA	Q9FYK2	Probable calcium-binding protein CML25	AT1G24620.1	EF hand calcium-binding protein family 	LOC_Os01g72100.1	"OsCML10 - Calmodulin-related calcium sensor protein, expressed"	AC233676_4.1	Calcium-binding EF-hand AC233676.2 19416-20012 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208871.1.S1_at	A	A1TS	POPTR_0010s11770	POPTR_0010s11770 (11)	scaffold_10:11942651-11943452(+) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT1G70650.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os03g50430.1	"zinc finger family protein, putative, expressed"	AC233676_26.1	"Zinc finger, RanBP2-type AC233676.2 107969-106402 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208872.1.S1_at	A	A1TS	POPTR_0010s11790	POPTR_0010s11790 (11)	scaffold_10:11951618-11953098(+) (11)	NA	NA	NA	AT3G60670.1	PLATZ transcription factor family protein 	LOC_Os02g07650.1	"zinc-binding protein, putative, expressed"	Medtr5g007370.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208874.1.S1_at	A	A1TS	POPTR_0010s11860	POPTR_0010s11860 (11)	scaffold_10:12009173-12009419(-) (11)	NA	NA	NA	NA	NA	NA	NA	AC233676_13.1	hypothetical protein AC233676.2 59489-58753 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208876.1.S1_at	A	A1TS	POPTR_0010s11880	POPTR_0010s11880 (11)	scaffold_10:12023317-12023707(+) (11)	NA	Q9ZU91	"Glucan endo-1,3-beta-glucosidase 3"	AT2G01630.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g085920.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.208877.1.S1_at	A	A1TS	POPTR_0010s11890	POPTR_0010s11890 (11)	scaffold_10:12025560-12027066(-) (11)	NA	Q9ZU90	F-box protein SKIP28	AT2G01620.1	RNI-like superfamily protein 	LOC_Os08g33140.1	"F-box domain containing protein, expressed"	Medtr4g157480.1	"4Fe-4S ferredoxin, iron-sulfur binding; Cyclin-like F-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208878.1.S1_at	A	A1TS	POPTR_0010s11960	POPTR_0010s11960 (11)	scaffold_10:12085071-12085575(+) (11)	NA	O49298	Probable pectinesterase/pectinesterase inhibitor 6	AT1G23200.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr3g040380.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.208879.1.S1_at	A	A1TS	POPTR_0010s12040	POPTR_0010s12040 (11)	scaffold_10:12142486-12142990(-) (11)	NA	NA	NA	AT1G23180.1	ARM repeat superfamily protein 	LOC_Os01g34080.1	"armadillo/beta-catenin-like repeat family protein, expressed"	Medtr1g035040.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208880.1.S1_at	A	A1TS	POPTR_0010s12070	POPTR_0010s12070 (11)	scaffold_10:12159323-12159589(+) (11)	NA	NA	NA	AT5G19120.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33430.1	"xyloglucanase inhibitor, putative, expressed"	Medtr1g086570.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208881.1.S1_at	A	A1TS	POPTR_0010s12150	POPTR_0010s12150 (11)	scaffold_10:12224868-12225540(+) (11)	NA	Q6X7K0	WUSCHEL-related homeobox 1	AT3G18010.1	WUSCHEL related homeobox 1 	LOC_Os04g55590.1	"homeobox domain containing protein, expressed"	Medtr4g154980.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.208882.1.S1_at	A	A1TS	POPTR_0010s12160	POPTR_0010s12160 (11)	scaffold_10:12229628-12229880(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G01480.1	O-fucosyltransferase family protein 	LOC_Os05g38490.1	"growth regulator related protein, putative"	Medtr1g034900.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208882.1.S1_x_at	A	A1TS	POPTR_0010s12160	POPTR_0010s12160 (11)	scaffold_10:12229178-12230624(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G01480.1	O-fucosyltransferase family protein 	LOC_Os05g38490.1	"growth regulator related protein, putative"	Medtr1g034900.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208883.1.S1_at	A	A1TS	POPTR_0010s12210	POPTR_0010s12210 (11)	scaffold_10:12267297-12268093(-) (11)	NA	Q54R62	Uridine-cytidine kinase C	AT2G01460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g21110.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208884.1.S1_at	A	A1TS	POPTR_0010s12230	POPTR_0010s12230 (11)	scaffold_10:12293202-12293339(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208885.1.S1_at	A	A1MS	POPTR_0010s12260	POPTR_0010s12260 (10)	scaffold_10:12303710-12303915(+) (10)	NA	Q9M9Q6	Serine carboxypeptidase-like 50	AT1G15000.1	serine carboxypeptidase-like 50 	LOC_Os01g11670.1	"OsSCP2 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr5g104840.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208886.1.S1_at	A	A1TS	POPTR_0010s12300	POPTR_0010s12300 (11)	scaffold_10:12332625-12335239(+) (11)	NA	Q0JKX1	Homeobox-leucine zipper protein HOX3	AT2G01430.1	homeobox-leucine zipper protein 17 	LOC_Os01g45570.1	"homeobox associated leucine zipper, putative, expressed"	Medtr2g071640.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.208887.1.S1_at	A	A1TS	POPTR_0010s12330	POPTR_0010s12330 (11)	scaffold_10:12362578-12363565(+) (11)	NA	P49173	Probable aquaporin NIP-type	AT5G37810.1	NOD26-like intrinsic protein 4;1 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr4g136200.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.208889.1.S1_at	A	A1TS	POPTR_0010s12400	POPTR_0010s12400 (11)	scaffold_10:12432144-12434024(-) (11)	NA	Q6NLC8	Uncharacterized protein At1g66480	AT2G01340.1	Encodes a protein whose expression is responsive to nematode infection. 	LOC_Os06g14780.2	expressed protein	Medtr5g087100.1	"Uncharacterized protein At1g66480, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208889.1.S1_x_at	A	A1TS	POPTR_0010s12400	POPTR_0010s12400 (11)	scaffold_10:12432144-12434146(-) (11)	NA	Q6NLC8	Uncharacterized protein At1g66480	AT2G01340.1	Encodes a protein whose expression is responsive to nematode infection. 	LOC_Os06g14780.2	expressed protein	Medtr5g087100.1	"Uncharacterized protein At1g66480, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208890.1.S1_at	A	A1TS	POPTR_0010s12410	POPTR_0010s12410 (11)	scaffold_10:12441996-12442193(-) (11)	NA	Q8GUG9	U-box domain-containing protein 11	AT1G23030.1	ARM repeat superfamily protein 	LOC_Os02g49950.1	"spotted leaf 11, putative, expressed"	Medtr4g130390.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.208891.1.S1_at	A	A1TS	POPTR_0010s12430	POPTR_0010s12430 (11)	scaffold_10:12466491-12466896(-) (11)	NA	P08452	Uncharacterized lipoprotein syc1174_c	NA	NA	LOC_Os01g03660.2	"MYB family transcription factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208892.1.S1_at	A	A1TS	POPTR_0010s12440	POPTR_0010s12440 (10)	scaffold_10:12477042-12478268(-) (10)	NA	P07788	Spore coat protein A	AT1G23010.1	Cupredoxin superfamily protein 	LOC_Os01g03530.2	"multicopper oxidase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208894.1.S1_at	A	A1TS	POPTR_0010s12490	POPTR_0010s12490 (11)	scaffold_10:12521222-12521713(-) (11)	NA	Q9C9A2	"Pentatricopeptide repeat-containing protein At1g71060, mitochondrial"	AT1G71060.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g32090.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g137270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208895.1.S1_at	A	A1TS	POPTR_0010s12510	POPTR_0010s12510 (11)	scaffold_10:12524453-12524615(-) (11)	NA	Q5QQ56	Xylosyltransferase 1	AT1G71070.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g03160.2	"xylosyltransferase, putative, expressed"	Medtr1g137280.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.208895.1.S1_s_at	A	A2TS	POPTR_0008s12700	POPTR_0010s12510 (11)//POPTR_0008s12700 (11)	scaffold_10:12523987-12524435(-) (11)//scaffold_8:8211736-8212184(+) (11)	NA	Q5QQ56	Xylosyltransferase 1	AT1G71070.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g03160.2	"xylosyltransferase, putative, expressed"	Medtr1g137280.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.208897.1.S1_at	A	A1MS	POPTR_0010s12540	POPTR_0010s12540 (11)	scaffold_10:12547941-12548269(+) (11)	NA	NA	NA	AT2G01300.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g03130.1	expressed protein	Medtr1g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208897.1.S1_s_at	A	A1MS	POPTR_0010s12540	POPTR_0010s12540 (11)	scaffold_10:12547776-12548230(+) (11)	NA	NA	NA	AT2G01300.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g03130.1	expressed protein	Medtr1g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208898.1.S1_at	A	A1TS	POPTR_0010s12580	POPTR_0010s12580 (11)	scaffold_10:12576397-12577575(+) (11)	NA	NA	NA	AT1G71110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits to 169 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g03110.1	expressed protein	Medtr1g137360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208899.1.S1_at	A	A1TS	POPTR_0010s12590	POPTR_0010s12590 (11)	scaffold_10:12584521-12585518(+) (11)	NA	NA	NA	AT2G01275.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g03100.2	"protein binding protein, putative, expressed"	Medtr1g137400.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208900.1.S1_at	A	A1TS	POPTR_0010s12620	POPTR_0010s12620 (11)	scaffold_10:12606566-12607103(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g094120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208901.1.S1_at	A	A1TS	POPTR_0010s12640	POPTR_0010s12640 (9)	scaffold_10:12620111-12622586(+) (11)	NA	Q8N0Z6	Tetratricopeptide repeat protein 5	NA	NA	LOC_Os01g32184.1	"tetratricopeptide repeat protein 5, putative, expressed"	Medtr1g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208902.1.S1_at	A	A1TS	POPTR_0010s12690	POPTR_0010s12690 (11)	scaffold_10:12680126-12681196(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G52450.1	MATE efflux family protein 	LOC_Os06g29844.1	"MATE efflux family protein, putative, expressed"	Medtr1g137970.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.208904.1.S1_at	A	A1TS	POPTR_0010s12710	POPTR_0010s12710 (11)	scaffold_10:12695977-12696821(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G15150.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.208905.1.S1_at	A	A1TS	POPTR_0010s12720	POPTR_0010s12720 (11)	scaffold_10:12702604-12703601(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G15170.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.208906.1.S1_at	A	A1TS	POPTR_0010s12750	POPTR_0010s12750 (11)	scaffold_10:12714192-12715355(+) (11)	NA	NA	NA	AT2G01120.2	origin recognition complex subunit 4 	LOC_Os01g49010.1	"ORC4 - Putative origin recognition complex subunit 4, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208907.1.S1_at	A	A1TS	POPTR_0010s12770	POPTR_0010s12770 (11)	scaffold_10:12723934-12724001(-) (11)	POPTR_0008s12500 (6)	Q9BVG9	Phosphatidylserine synthase 2	AT1G15110.1	phosphatidyl serine synthase family protein 	LOC_Os01g02890.1	"phosphatidylserine synthase, putative"	NA	NA	GO:0006659|phosphatidylserine biosynthetic process	NA	NA
PtpAffx.208908.1.S1_at	A	A1TS	POPTR_0010s12780	POPTR_0010s12780 (11)	scaffold_10:12750514-12751011(-) (11)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT2G01130.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.208909.1.S1_at	A	A1TS	POPTR_0010s12780	POPTR_0010s12780 (11)	scaffold_10:12761112-12761419(-) (11)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT2G01130.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.20891.1.S1_at	A	A1TS	POPTR_0019s11530	POPTR_0019s11530 (11)	scaffold_19:12804547-12806163(-) (11)	POPTR_0013s11920 (7)	Q641M3	Transmembrane protein 18	AT1G34350.1	unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). 	LOC_Os08g01350.1	"transmembrane protein 18, putative, expressed"	Medtr1g100500.1	"Transmembrane protein 18, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208912.1.S1_at	A	A1TS	POPTR_0010s12820	POPTR_0010s12820 (11)	scaffold_10:12799329-12800380(+) (11)	NA	Q42656	Alpha-galactosidase	AT5G08370.1	alpha-galactosidase 2 	LOC_Os10g35110.2	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208913.1.S1_at	A	A1TS	POPTR_0010s12850	POPTR_0010s12850 (10)	scaffold_10:12816222-12816635(+) (10)	NA	NA	NA	AT4G39490.1	"cytochrome P450, family 96, subfamily A, polypeptide 10 "	LOC_Os01g08810.1	"cytochrome P450, putative, expressed"	Medtr4g008730.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208914.1.S1_at	A	A1TS	POPTR_0010s12860	POPTR_0010s12860 (11)	scaffold_10:12818145-12818293(-) (11)	NA	Q9C9F5	Zinc finger CCCH domain-containing protein 15	AT1G68200.2	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os05g50080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	AC235678_14.1	"Zinc finger, CCCH-type AC235678.1 77770-76962 F EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.208915.1.S1_at	A	A1TS	POPTR_0010s12870	POPTR_0010s12870 (10)	scaffold_10:12824909-12826380(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208916.1.S1_s_at	A	A1TS	POPTR_0010s12880	POPTR_0010s12880 (10)	scaffold_10:12828866-12829090(-) (10)	NA	NA	NA	AT1G68185.1	Ubiquitin-like superfamily protein 	LOC_Os01g42250.1	expressed protein	AC235678_17.1	hypothetical protein AC235678.1 90359-87597 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208917.1.S1_at	A	A1TS	POPTR_0010s12900	POPTR_0010s12900 (11)	scaffold_10:12834786-12835700(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208918.1.S1_at	A	A1TS	POPTR_0010s12920	POPTR_0010s12920 (10)	scaffold_10:12846809-12847239(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g093950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208919.1.S1_at	A	A1TS	POPTR_0010s12940	POPTR_0010s12940 (11)	scaffold_10:12858636-12860336(-) (11)	NA	Q8LFD1	"Putative lipid phosphate phosphatase 3, chloroplastic"	AT3G02600.2	lipid phosphate phosphatase 3 	LOC_Os01g04660.1	"lipid phosphatase protein, putative, expressed"	Medtr7g093870.1	"Phosphoesterase, PA-phosphatase related "	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.208920.1.S1_at	A	A1TS	POPTR_0010s12960	POPTR_0010s12960 (11)	scaffold_10:12887218-12887494(-) (11)	NA	Q05AM5	Elongator complex protein 2	AT1G49540.1	elongator protein 2 	LOC_Os08g38570.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208921.1.S1_at	A	A1TS	POPTR_0010s12980	POPTR_0010s12980 (11)	scaffold_10:12903542-12905392(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208922.1.S1_at	A	A1TS	POPTR_0010s12990	POPTR_0010s12990 (9)	scaffold_10:12905685-12906939(+) (10)	NA	Q9C5X0	Auxin-responsive protein IAA34	AT1G15050.1	indole-3-acetic acid inducible 34 	LOC_Os02g57250.2	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr5g076260.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.208924.1.S1_at	A	A1TS	POPTR_0010s13030	POPTR_0010s13030 (11)	scaffold_10:12935125-12935508(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208925.1.S1_at	A	A1TS	POPTR_0010s13050	POPTR_0010s13050 (11)	scaffold_10:12948178-12948883(+) (11)	NA	Q9ZDC7	Putative glutamine amidotransferase-like protein RP404	AT5G38200.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os01g04620.3	"transposon protein, putative, unclassified, expressed"	Medtr7g093720.1	Peptidase C26 	GO:0006541|glutamine metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.208926.1.S1_at	A	A1TS	POPTR_0010s13060	POPTR_0010s13060 (10)	scaffold_10:12955154-12957133(-) (10)	NA	NA	NA	AT2G01260.1	Protein of unknown function (DUF789) 	LOC_Os01g33000.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208927.1.S1_at	A	A1TS	POPTR_0010s13090	POPTR_0010s13090 (11)	scaffold_10:12984431-12985400(+) (11)	POPTR_0010s13070 (8)	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.2	Protein kinase superfamily protein 	LOC_Os01g04430.1	conserved hypothetical protein	Medtr1g140240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208929.1.S1_at	A	A1TS	POPTR_0188s00230	POPTR_0188s00230 (9)	scaffold_188:20564-20906(-) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.2	Protein kinase superfamily protein 	LOC_Os01g04430.1	conserved hypothetical protein	Medtr1g140240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208929.1.S1_s_at	A	A3TS	POPTR_0010s13070	POPTR_0010s13090 (11)//POPTR_0010s13070 (11)//POPTR_0188s00230 (11)	scaffold_10:12973134-12973290(+) (11)//scaffold_10:12984225-12984381(+) (11)//scaffold_188:20956-21112(-) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.2	Protein kinase superfamily protein 	LOC_Os01g04430.1	conserved hypothetical protein	Medtr1g140240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208930.1.S1_s_at	A	A2TS	POPTR_0188s00200	POPTR_0463s00220 (11)//POPTR_0188s00200 (11)	scaffold_188:1271-1803(-) (11)//scaffold_463:11008-11540(-) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G25390.1	Protein kinase superfamily protein 	LOC_Os01g04409.1	"OsWAK1 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr1g140520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208931.1.S1_s_at	A	A1TS	POPTR_0010s13120	POPTR_0010s13120 (11)	scaffold_10:13000343-13001305(-) (11)	NA	Q54FU9	Mitochondrial substrate carrier family protein W	AT1G25380.1	NAD+ transporter 2 	LOC_Os05g28870.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g068050.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208933.1.S1_s_at	A	A1TS	POPTR_0010s13130	POPTR_0010s13130 (11)	scaffold_10:13014838-13016501(+) (11)	NA	Q9M9C6	Probable protein phosphatase 2C 15	AT1G68410.2	Protein phosphatase 2C family protein 	LOC_Os07g49040.1	"protein phosphotase protein, putative, expressed"	Medtr1g140400.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208934.1.S1_at	A	A1TS	POPTR_0010s13140	POPTR_0010s13140 (11)	scaffold_10:13025945-13026171(+) (11)	NA	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400	AT1G68400.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os01g04230.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g140560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.208935.1.S1_at	A	A1TS	POPTR_0010s13160	POPTR_0010s13160 (11)	scaffold_10:13031885-13032484(-) (11)	NA	NA	NA	AT5G11730.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g52120.1	"DNA binding protein, putative, expressed"	Medtr1g140570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.208936.1.S1_at	A	A1TS	POPTR_0010s13170	POPTR_0010s13170 (11)	scaffold_10:13035663-13035779(-) (11)	NA	Q5XGR8	Beta-lactamase-like protein 2	AT1G25375.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os01g04200.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr1g140580.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208936.1.S1_s_at	A	A1TS	POPTR_0010s13170	POPTR_0010s13170 (11)	scaffold_10:13036877-13038588(-) (11)	NA	Q5XGR8	Beta-lactamase-like protein 2	AT1G25375.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os01g04200.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr1g140580.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208937.1.S1_at	A	A1TS	POPTR_0010s13180	POPTR_0010s13180 (11)	scaffold_10:13043773-13045786(-) (11)	NA	NA	NA	AT1G25375.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os01g04200.4	"metallo-beta-lactamase family protein, putative, expressed"	Medtr1g140580.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208939.1.S1_at	A	A1TS	POPTR_0010s13230	POPTR_0010s13230 (11)	scaffold_10:13095407-13095575(+) (11)	NA	Q39265	Zinc finger protein 6	AT1G68360.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g04120.1	"ZOS1-03 - C2H2 zinc finger protein, expressed"	Medtr5g067950.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208941.1.S1_at	A	A1TS	POPTR_0010s13260	POPTR_0010s13260 (11)	scaffold_10:13122824-13123273(+) (11)	NA	NA	NA	AT1G25370.1	Protein of unknown function (DUF1639) 	LOC_Os01g49440.1	expressed protein	Medtr1g140640.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208942.1.S1_at	A	A1TS	POPTR_0010s13270	POPTR_0010s13270 (11)	scaffold_10:13131512-13132062(-) (11)	NA	NA	NA	AT1G68330.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48780.1); Has 155 Blast hits to 147 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 3; Plants - 126; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	NA	NA	Medtr1g140670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208943.1.S1_at	A	A1TS	POPTR_0010s13280	POPTR_0010s13280 (11)	scaffold_10:13149438-13149714(+) (11)	NA	P52780	Glutaminyl-tRNA synthetase	AT1G25350.1	"glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative "	LOC_Os05g08990.1	"glutaminyl-tRNA synthetase, putative, expressed"	Medtr1g140680.1	"Glutamyl-tRNA synthetase archae/euk cytosolic; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 2; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 1 "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006425|glutaminyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0004819|glutamine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.208943.1.S1_s_at	A	A2TS	POPTR_0008s12140	POPTR_0010s13280 (11)//POPTR_0008s12140 (11)	scaffold_10:13148757-13149916(+) (11)//scaffold_8:7830939-7832070(-) (11)	NA	P52780	Glutaminyl-tRNA synthetase	AT1G25350.1	"glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative "	LOC_Os01g09000.1	"glutaminyl-tRNA synthetase, putative, expressed"	Medtr1g140680.1	"Glutamyl-tRNA synthetase archae/euk cytosolic; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 2; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 1 "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006425|glutaminyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0004819|glutamine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.208944.1.S1_at	A	A1TS	POPTR_0010s13290	POPTR_0010s13290 (11)	scaffold_10:13158292-13158978(-) (11)	NA	Q9LK95	Transcription factor MYB21	AT1G68320.1	myb domain protein 62 	LOC_Os01g03720.1	"MYB family transcription factor, putative, expressed"	Medtr1g140720.1	Phosphoglycerate/bisphosphoglycerate mutase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208945.1.S1_at	A	A1TS	POPTR_0010s13320	POPTR_0010s13320 (11)	scaffold_10:13171134-13172517(+) (11)	NA	NA	NA	AT3G25930.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.208946.1.S1_at	A	A1TS	POPTR_0010s13340	POPTR_0010s13340 (11)	scaffold_10:13181492-13181921(-) (11)	NA	P24021	Nuclease S1	AT1G68290.1	endonuclease 2 	LOC_Os01g03740.1	"nuclease PA3, putative, expressed"	Medtr1g140750.1	S1/P1 nuclease 	GO:0044265|cellular macromolecule catabolic process||GO:0006308|DNA catabolic process	GO:0003676|nucleic acid binding||GO:0004519|endonuclease activity	NA
PtpAffx.208946.1.S1_s_at	A	A1TS	POPTR_0010s13340	POPTR_0010s13340 (11)	scaffold_10:13180363-13181631(-) (11)	NA	P24021	Nuclease S1	AT1G68290.1	endonuclease 2 	LOC_Os01g03740.1	"nuclease PA3, putative, expressed"	Medtr1g140750.1	S1/P1 nuclease 	GO:0044265|cellular macromolecule catabolic process||GO:0006308|DNA catabolic process	GO:0003676|nucleic acid binding||GO:0004519|endonuclease activity	NA
PtpAffx.208947.1.S1_at	A	A1TS	POPTR_0010s13370	POPTR_0010s13370 (11)	scaffold_10:13207267-13207768(-) (11)	NA	Q94ID3	"Adenylate isopentenyltransferase 1, chloroplastic"	AT1G68460.1	isopentenyltransferase 1 	LOC_Os05g47840.1	"IPP transferase, putative, expressed"	Medtr1g140830.1	Isopentenyl transferase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208949.1.S1_at	A	A1TS	POPTR_0010s13400	POPTR_0010s13400 (11)	scaffold_10:13252986-13254517(-) (11)	NA	NA	NA	AT1G68480.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g03840.1	"ZOS1-02 - C2H2 zinc finger protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20895.1.S1_s_at	A	A1TS	POPTR_0013s05480	POPTR_0013s05480 (11)	scaffold_13:3919047-3919953(+) (11)	NA	Q43314	Glutamate dehydrogenase 1	AT5G18170.1	glutamate dehydrogenase 1 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.208951.1.S1_at	A	A1TS	POPTR_0010s13480	POPTR_0010s13480 (11)	scaffold_10:13302241-13302613(+) (11)	NA	Q9CA30	LOB domain-containing protein 42	AT1G68510.1	LOB domain-containing protein 42 	LOC_Os01g32770.1	"DUF260 domain containing protein, putative, expressed"	Medtr6g020260.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208952.1.S1_at	A	A1TS	POPTR_0010s13490	POPTR_0010s13490 (10)	scaffold_10:13308250-13309167(-) (10)	NA	Q8RWD0	Zinc finger protein CONSTANS-LIKE 16	AT1G25440.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g15330.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr4g158260.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208955.1.S1_at	A	A1TS	POPTR_0010s13600	POPTR_0010s13600 (11)	scaffold_10:13412950-13413346(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208956.1.S1_at	A	A1MS	POPTR_0010s13630	POPTR_0010s13630 (10)	scaffold_10:13441503-13442066(+) (10)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	NA	NA	Medtr5g068370.1	"TGF-beta receptor, type I/II extracellular region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208957.1.S1_at	A	A1TS	POPTR_0010s13640	POPTR_0010s13640 (11)	scaffold_10:13445241-13445721(+) (11)	NA	NA	NA	AT4G39670.1	Glycolipid transfer protein (GLTP) family protein 	LOC_Os03g50280.1	"GLTP domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208959.1.S1_at	A	A1TS	POPTR_0010s13690	POPTR_0010s13690 (10)	scaffold_10:13474463-13475039(+) (10)	NA	Q5RKH1	Serine/threonine-protein kinase PRP4 homolog	AT3G25840.1	Protein kinase superfamily protein 	LOC_Os12g44330.2	"serine/threonine-protein kinase PRP4, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208960.1.S1_at	A	A1TS	POPTR_0010s13730	POPTR_0010s13730 (11)	scaffold_10:13492362-13493380(+) (11)	NA	NA	NA	AT3G25805.1	unknown protein; Has 98 Blast hits to 98 proteins in 45 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os04g38850.1	expressed protein	Medtr5g068450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208961.1.S1_at	A	A1TS	POPTR_0010s13750	POPTR_0010s13750 (11)	scaffold_10:13503163-13504014(+) (11)	NA	Q9LS46	Aluminum-activated malate transporter 9	AT3G18440.1	aluminum-activated malate transporter 9 	LOC_Os02g49790.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208962.1.S1_at	A	A1TS	POPTR_0010s13780	POPTR_0010s13780 (11)	scaffold_10:13521748-13522970(-) (11)	NA	Q9LQU4	Uncharacterized protein At1g14870	AT1G68610.1	PLANT CADMIUM RESISTANCE 11 	LOC_Os02g36940.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g129520.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208964.1.S1_at	A	A1TS	POPTR_0010s13800	POPTR_0010s13800 (11)	scaffold_10:13530367-13530827(+) (11)	NA	NA	NA	NA	NA	NA	NA	AC233660_3.1	hypothetical protein AC233660.2 18907-18340 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208965.1.S1_at	A	A1TS	POPTR_0010s13810	POPTR_0010s13810 (11)	scaffold_10:13531643-13533575(-) (11)	NA	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT1G68640.1	bZIP transcription factor family protein 	LOC_Os01g59350.2	"transcription factor, putative, expressed"	Medtr5g068460.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.208966.1.S1_at	A	A1TS	POPTR_0010s13820	POPTR_0010s13820 (11)	scaffold_10:13537958-13540045(-) (11)	NA	Q869R1	CTL-like protein DDB_G0274487	AT1G25500.2	Plasma-membrane choline transporter family protein 	LOC_Os02g36960.1	"choline transporter-related, putative, expressed"	Medtr5g068500.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208967.1.S1_s_at	A	A1TS	POPTR_0010s13840	POPTR_0010s13840 (11)	scaffold_10:13557475-13558444(-) (11)	NA	Q9C6M2	Lysine histidine transporter-like 6	AT1G25530.1	Transmembrane amino acid transporter family protein 	LOC_Os04g38860.2	expressed protein	Medtr1g117800.1	"lysine and histidine specific transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208968.1.S1_s_at	A	A2TS	POPTR_0008s11650	POPTR_0010s13870 (11)//POPTR_0008s11650 (11)	scaffold_10:13577569-13578822(-) (11)//scaffold_8:7445211-7446444(+) (11)	NA	Q6GP15	Mediator of RNA polymerase II transcription subunit 25	AT1G25540.1	phytochrome and flowering time regulatory protein (PFT1) 	LOC_Os09g13610.1	"PFT1, putative, expressed"	Medtr5g068600.1	"PFT1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208969.1.S1_at	A	A1TS	POPTR_0010s13880	POPTR_0010s13880 (11)	scaffold_10:13593378-13594411(+) (11)	NA	NA	NA	AT1G13310.1	Endosomal targeting BRO1-like domain-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208970.1.S1_at	A	A1TS	POPTR_0010s13900	POPTR_0010s13900 (11)	scaffold_10:13607552-13608764(-) (11)	NA	Q940D0	Two-component response regulator ARR1	AT1G25550.1	myb-like transcription factor family protein 	LOC_Os02g22020.1	"MYB family transcription factor, putative, expressed"	Medtr5g068770.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208972.1.S1_at	A	A1TS	POPTR_0010s13910	POPTR_0010s13910 (11)	scaffold_10:13617519-13618281(+) (11)	NA	Q8VWG3	Protein TRANSPARENT TESTA 1	AT1G13290.1	C2H2-like zinc finger protein 	LOC_Os06g40960.1	"ZOS6-05 - C2H2 zinc finger protein, expressed"	Medtr5g068890.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208973.1.S1_at	A	A1TS	POPTR_0010s13950	POPTR_0010s13950 (11)	scaffold_10:13652429-13653714(-) (11)	NA	C0LGL4	Probable LRR receptor-like serine/threonine-protein kinase At2g28960	AT1G25570.1	Di-glucose binding protein with Leucine-rich repeat domain 	LOC_Os01g04720.1	"leucine-rich repeat protein-related, putative, expressed"	Medtr5g069200.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.208974.1.S1_at	A	A1TS	POPTR_0010s13960	POPTR_0010s13960 (11)	scaffold_10:13662725-13663207(+) (11)	NA	Q0V7R1	Probable galacturonosyltransferase-like 3	AT1G13250.1	galacturonosyltransferase-like 3 	LOC_Os03g24510.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr3g123120.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.208975.1.S1_at	A	A1TS	POPTR_0010s13980	POPTR_0010s13980 (11)	scaffold_10:13683909-13685851(-) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT1G25580.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g15690.1	"no apical meristem protein, putative, expressed"	Medtr5g069400.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.208975.1.S1_s_at	A	A2TS	POPTR_0008s11550	POPTR_0010s13980 (11)//POPTR_0008s11550 (11)	scaffold_10:13684044-13685812(-) (11)//scaffold_8:7343648-7345467(+) (10)	NA	Q6NQK2	NAC domain-containing protein 8	AT1G25580.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g15690.1	"no apical meristem protein, putative, expressed"	Medtr5g069400.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.208976.1.S1_at	A	A1TS	POPTR_0010s14000	POPTR_0010s14000 (10)	scaffold_10:13701230-13704036(-) (10)	NA	NA	NA	AT1G68820.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208977.1.S1_at	A	A1TS	POPTR_0010s14010	POPTR_0010s14010 (11)	scaffold_10:13708265-13709653(-) (11)	NA	Q9S7Y1	Transcription factor bHLH30	AT1G68810.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr1g118050.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.208977.1.S1_x_at	A	A1TS	POPTR_0010s14010	POPTR_0010s14010 (11)	scaffold_10:13708265-13709653(-) (11)	NA	Q9S7Y1	Transcription factor bHLH30	AT1G68810.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr1g118050.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.208978.1.S1_at	A	A1TS	POPTR_0010s14020	POPTR_0010s14020 (11)	scaffold_10:13723263-13723800(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G25700.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g21040.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr5g098350.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208979.1.S1_at	A	A1TS	POPTR_0010s14030	POPTR_0010s14030 (11)	scaffold_10:13738091-13738208(+) (11)	NA	A0AQW4	Transcription factor TCP12	AT1G68800.1	TCP domain protein 12 	LOC_Os03g49880.1	"TCP family transcription factor, putative, expressed"	AC233675_3.1	TCP transcription factor AC233675.1 11574-12645 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20898.1.A1_at	A	A1TS	POPTR_0013s09600	POPTR_0013s09600 (11)	scaffold_13:9393219-9393578(-) (11)	NA	P19244	22.7 kDa class IV heat shock protein	AT4G10250.1	HSP20-like chaperones superfamily protein 	LOC_Os04g36750.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr7g034960.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208980.1.S1_at	A	A1TS	POPTR_0010s14100	POPTR_0010s14100 (11)	scaffold_10:13792032-13792169(-) (11)	NA	P10897	Cytochrome b561	AT1G26100.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os08g29520.1	"cytochrome b561, putative, expressed"	Medtr5g069530.2	Cytochrome b561 / ferric reductase transmembrane 	NA	NA	GO:0016021|integral to membrane
PtpAffx.208981.1.S1_s_at	A	A2TS	POPTR_0010s14110	POPTR_0010s14110 (11)//POPTR_0010s14120 (11)	scaffold_10:13800809-13801131(+) (11)//scaffold_10:13815163-13815485(+) (11)	NA	Q9LIG0	Clavaminate synthase-like protein At3g21360	AT3G21360.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g29510.1	conserved hypothetical protein	Medtr2g122100.1	Taurine catabolism dioxygenase TauD/TfdA 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.208982.1.S1_s_at	A	A2TS	POPTR_0010s14110	POPTR_0010s14110 (11)//POPTR_0010s14120 (11)	scaffold_10:13801447-13802083(+) (11)//scaffold_10:13815803-13816439(+) (11)	NA	Q9LIG0	Clavaminate synthase-like protein At3g21360	AT3G21360.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g29510.1	conserved hypothetical protein	Medtr2g122100.1	Taurine catabolism dioxygenase TauD/TfdA 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.208983.1.S1_at	A	A1TS	POPTR_0010s14140	POPTR_0010s14140 (11)	scaffold_10:13831089-13831124(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208983.1.S1_s_at	A	A1TS	POPTR_0010s14140	POPTR_0010s14140 (11)	scaffold_10:13831069-13831330(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208984.1.S1_at	A	A1TS	POPTR_0010s14150	POPTR_0010s14150 (11)	scaffold_10:13836982-13837323(-) (11)	NA	NA	NA	AT3G25640.1	"Protein of unknown function, DUF617 "	LOC_Os05g50160.1	"DUF617 domain containing protein, expressed"	Medtr8g115750.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208985.1.S1_at	A	A1TS	POPTR_0010s14160	POPTR_0010s14160 (11)	scaffold_10:13841988-13842383(-) (11)	NA	Q9CA40	Nudix hydrolase 1	AT1G68760.1	nudix hydrolase  1 	NA	NA	Medtr5g071730.1	NUDIX hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208986.1.S1_at	A	A1TS	POPTR_0010s14170	POPTR_0010s14170 (9)	scaffold_10:13852428-13854510(+) (10)	NA	Q8GVE8	Phosphoenolpyruvate carboxylase 4	AT1G68750.1	phosphoenolpyruvate carboxylase 4 	LOC_Os01g02050.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr1g118320.1	Phosphoenolpyruvate carboxylase; AAA ATPase; 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.208987.1.S1_at	A	A1TS	POPTR_0010s14180	POPTR_0010s14180 (11)	scaffold_10:13874050-13874587(+) (11)	NA	Q9C6W5	ABC transporter G family member 14	AT3G25620.2	ABC-2 type transporter family protein 	LOC_Os08g07010.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr1g118320.1	Phosphoenolpyruvate carboxylase; AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.208988.1.S1_at	A	A1TA	POPTR_0010s14250	POPTR_0010s14250 (11)	scaffold_10:13915168-13915563(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208988.1.S1_x_at	A	A1TA	POPTR_0010s14250	POPTR_0010s14250 (11)	scaffold_10:13915106-13915563(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208989.1.S1_at	A	A1MS	POPTR_0010s14290	POPTR_0010s14290 (11)	scaffold_10:13951553-13951961(-) (11)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT1G68690.1	Protein kinase superfamily protein 	LOC_Os05g01040.3	"serine/threonine-protein kinase, putative, expressed"	Medtr8g093550.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208990.1.S1_at	A	A1TS	POPTR_0010s14300	POPTR_0010s14300 (10)	scaffold_10:13960126-13961201(-) (10)	NA	P87242	HD domain-containing protein C4G3.17	AT1G26160.1	Metal-dependent phosphohydrolase 	LOC_Os01g45390.2	"HD domain containing protein 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208991.1.S1_at	A	A1TS	POPTR_0010s14340	POPTR_0010s14340 (11)	scaffold_10:13988577-13990025(-) (11)	NA	NA	NA	AT1G26170.1	ARM repeat superfamily protein 	LOC_Os06g16280.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208992.1.S1_at	A	A1TS	POPTR_0010s14350	POPTR_0010s14350 (10)	scaffold_10:13990863-13991413(-) (10)	NA	NA	NA	AT1G13480.1	Protein of unknown function (DUF1262) 	LOC_Os08g31910.1	expressed protein	Medtr5g036770.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208994.1.S1_at	A	A1TS	POPTR_0010s14400	POPTR_0010s14400 (11)	scaffold_10:14025869-14025929(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208994.1.S1_s_at	A	A1TS	POPTR_0010s14400	POPTR_0010s14400 (11)	scaffold_10:14025926-14026053(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208995.1.S1_at	A	A1TS	POPTR_0010s14410	POPTR_0010s14410 (10)	scaffold_10:14037274-14037673(+) (10)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT3G25560.2	NSP-interacting kinase 2 	LOC_Os06g16330.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.208996.1.S1_s_at	A	A1TS	POPTR_0010s14430	POPTR_0010s14430 (11)	scaffold_10:14044129-14044972(-) (11)//scaffold_10:14111599-14112137(-) (10)	POPTR_0010s14550 (8)	Q75HB1	Fe(2+) transport protein 1	AT2G04032.1	zinc transporter 7 precursor 	LOC_Os03g46470.1	"metal cation transporter, putative, expressed"	Medtr4g157380.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.208997.1.S1_s_at	A	A1TS	POPTR_0010s14440	POPTR_0010s14440 (11)	scaffold_10:14050258-14051378(-) (11)	NA	Q54R62	Uridine-cytidine kinase C	AT1G26190.1	Phosphoribulokinase / Uridine kinase family 	LOC_Os02g47860.2	"uridine kinase, putative, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0006171|cAMP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004016|adenylate cyclase activity||GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.208998.1.S1_at	A	A1TS	POPTR_0010s14490	POPTR_0010s14490 (11)	scaffold_10:14080961-14081869(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208999.1.S1_at	A	A1TS	POPTR_0010s14500	POPTR_0010s14500 (9)	scaffold_10:14083051-14083572(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT1G64190.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.209000.1.S1_at	A	A1TS	POPTR_0010s14520	POPTR_0010s14520 (11)	scaffold_10:14089820-14091429(-) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT1G26230.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.209001.1.S1_at	A	A1TS	POPTR_0010s14520	POPTR_0010s14520 (11)	scaffold_10:14093706-14093855(-) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT1G26230.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.209002.1.S1_at	A	A1TS	POPTR_0010s14540	POPTR_0010s14540 (11)	scaffold_10:14110660-14110850(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209004.1.S1_at	A	A1TS	POPTR_0010s14560	POPTR_0010s14560 (11)	scaffold_10:14121877-14123352(+) (11)	NA	Q2S2V6	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase	AT1G68890.1	magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases 	LOC_Os02g37090.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr4g104110.1	Anthranilate synthase component I and chorismate binding protein 	NA	GO:0030976|thiamin pyrophosphate binding	NA
PtpAffx.209005.1.S1_at	A	A1TS	POPTR_0010s14560	POPTR_0010s14560 (11)	scaffold_10:14128577-14130960(+) (11)	NA	Q2S2V6	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase	AT1G68890.1	magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases 	LOC_Os02g37090.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr4g104110.1	Anthranilate synthase component I and chorismate binding protein 	NA	GO:0030976|thiamin pyrophosphate binding	NA
PtpAffx.209006.1.S1_at	A	A1TS	POPTR_0010s14570	POPTR_0010s14570 (11)	scaffold_10:14133719-14134307(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209007.1.S1_at	A	A1TS	POPTR_0010s14590	POPTR_0010s14590 (11)	scaffold_10:14144389-14144590(-) (11)	NA	A8MQR0	WPP domain-interacting tail-anchored protein 2	AT1G68910.3	WPP domain-interacting protein 2 	LOC_Os05g15140.1	expressed protein	Medtr3g102350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209007.1.S1_x_at	A	A1TS	POPTR_0010s14590	POPTR_0010s14590 (11)	scaffold_10:14144403-14144712(-) (11)	NA	A8MQR0	WPP domain-interacting tail-anchored protein 2	AT1G68910.3	WPP domain-interacting protein 2 	LOC_Os05g15140.1	expressed protein	Medtr3g102350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209008.1.S1_at	A	A1TS	POPTR_0010s14590	POPTR_0010s14590 (11)	scaffold_10:14145089-14145564(-) (11)	NA	A8MQR0	WPP domain-interacting tail-anchored protein 2	AT1G68910.3	WPP domain-interacting protein 2 	LOC_Os05g15140.1	expressed protein	Medtr3g102350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209009.1.S1_at	A	A1TS	POPTR_0010s14610	POPTR_0010s14610 (11)	scaffold_10:14165339-14165790(+) (11)	NA	Q9CAA8	Putative pentatricopeptide repeat-containing protein At1g68930	AT1G68930.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os02g01610.2	"pentatricopeptide, putative, expressed"	Medtr8g077070.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209010.1.S1_s_at	A	A2TS	POPTR_0008s11220	POPTR_0008s11220 (11)//POPTR_0010s14620 (10)	scaffold_10:14166874-14167963(-) (11)//scaffold_8:7099669-7100762(+) (11)	NA	A0JPD7	UPF0765 protein C10orf58 homolog	NA	NA	NA	NA	Medtr8g077060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209011.1.S1_at	A	A1TS	POPTR_0010s14630	POPTR_0010s14630 (11)	scaffold_10:14170192-14170742(-) (11)	NA	Q9CAA7	Putative U-box domain-containing protein 42	AT1G68940.1	Armadillo/beta-catenin-like repeat family protein 	LOC_Os06g16410.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.209012.1.S1_at	A	A1TS	POPTR_0010s14640	POPTR_0010s14640 (10)	scaffold_10:14178183-14179099(+) (11)	NA	NA	NA	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g16420.1	"amino acid transporter, putative, expressed"	Medtr8g077220.1	"amino acid transporter-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209013.1.S1_at	A	A1TS	POPTR_0010s14650	POPTR_0010s14650 (11)	scaffold_10:14180123-14182696(-) (11)	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT1G68990.1	male gametophyte defective 3 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.209014.1.S1_at	A	A1TS	POPTR_0010s14680	POPTR_0010s14680 (11)	scaffold_10:14208866-14209095(+) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT5G03490.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os08g38160.1	"cytokinin-O-glucosyltransferase, putative"	Medtr2g074330.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209015.1.S1_at	A	A1TS	POPTR_0010s14700	POPTR_0010s14700 (11)	scaffold_10:14217391-14217902(-) (11)	NA	Q9LMY5	Putative pentatricopeptide repeat-containing protein At1g13630	AT1G13630.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g33874.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g056710.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209016.1.S1_at	A	A1TS	POPTR_0010s14730	POPTR_0010s14730 (11)	scaffold_10:14243835-14244352(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209017.1.S1_at	A	A1TS	POPTR_0010s14760	POPTR_0010s14760 (11)	scaffold_10:14253646-14254405(-) (11)	NA	P24555	Protease 2	AT1G69020.1	Prolyl oligopeptidase family protein 	LOC_Os09g29950.3	"OsPOP19 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050110.1	"Peptidase S9A, prolyl oligopeptidase; Peptidase S9A, prolyl oligopeptidase, N-terminal beta-propeller "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.209018.1.S1_at	A	A1MS	POPTR_0010s14780	POPTR_0010s14780 (10)	scaffold_10:14266773-14268046(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g050010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209019.1.S1_at	A	A1TS	POPTR_0010s14790	POPTR_0010s14790 (11)	scaffold_10:14271344-14271914(-) (11)	NA	NA	NA	AT2G03810.4	18S pre-ribosomal assembly protein gar2-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209020.1.S1_at	A	A1TS	POPTR_0010s14850	POPTR_0010s14850 (11)	scaffold_10:14322947-14323215(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g049380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209021.1.S1_at	A	A2TS	POPTR_0010s14860	POPTR_0010s14860 (11)//POPTR_0006s13760 (9)	scaffold_10:14334438-14336861(+) (11)//scaffold_6:10979037-10981690(-) (9)	NA	Q6CBH3	"Probable hexaprenyl pyrophosphate synthase, mitochondrial"	AT2G34630.2	geranyl diphosphate synthase 1 	LOC_Os06g46450.1	"polyprenyl synthetase, putative, expressed"	Medtr5g019360.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.209023.1.S1_at	A	A1TS	POPTR_0010s14890	POPTR_0010s14890 (11)	scaffold_10:14360585-14360626(+) (11)	NA	NA	NA	AT1G69060.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g54150.2	expressed protein	Medtr5g049250.1	"F4N2.3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209023.1.S1_s_at	A	A1TS	POPTR_0010s14890	POPTR_0010s14890 (11)	scaffold_10:14359556-14360560(+) (11)	NA	NA	NA	AT1G69060.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g54150.2	expressed protein	Medtr5g049250.1	"F4N2.3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209024.1.S1_at	A	A1TS	POPTR_0010s14900	POPTR_0010s14900 (11)	scaffold_10:14367165-14367948(-) (11)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209025.1.S1_at	A	A1TS	POPTR_0010s14910	POPTR_0010s14910 (11)	scaffold_10:14372718-14373359(-) (11)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr8g045120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209026.1.S1_at	A	A1TS	POPTR_0010s14920	POPTR_0010s14920 (11)	scaffold_10:14378796-14379591(-) (11)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209027.1.S1_at	A	A1MS	POPTR_0010s14920	POPTR_0010s14920 (10)	scaffold_10:14383544-14384213(-) (11)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209028.1.S1_at	A	A1TS	POPTR_0010s14940	POPTR_0010s14940 (11)	scaffold_10:14386904-14387509(-) (11)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g43750.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209029.1.S1_at	A	A1TS	POPTR_0010s14980	POPTR_0010s14980 (11)	scaffold_10:14393970-14397815(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209030.1.S1_at	A	A1TS	POPTR_0010s14990	POPTR_0010s14990 (10)	scaffold_10:14402810-14403396(+) (10)	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os03g21540.1	"TKL_IRAK_CrRLK1L-1.8 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209031.1.S1_at	A	A1TS	POPTR_0010s15000	POPTR_0010s15000 (9)	scaffold_10:14411354-14411386(-) (9)	NA	P78316	Nucleolar protein 14	AT1G69070.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). 	LOC_Os03g40110.1	"nop14-like family protein, expressed"	Medtr1g043170.1	Nop14-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209031.1.S1_s_at	A	A1TS	POPTR_0010s15000	POPTR_0010s15000 (10)	scaffold_10:14411415-14411827(-) (10)	NA	P78316	Nucleolar protein 14	AT1G69070.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). 	LOC_Os03g40110.1	"nop14-like family protein, expressed"	Medtr1g043170.1	Nop14-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209032.1.S1_at	A	A1TS	POPTR_0010s15030	POPTR_0010s15030 (10)	scaffold_10:14429701-14430130(-) (10)	NA	NA	NA	AT5G49320.1	Protein of unknown function (DUF1218) 	LOC_Os01g14960.1	expressed protein	Medtr2g038990.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209033.1.S1_at	A	A1TS	POPTR_0010s15050	POPTR_0010s15050 (9)	scaffold_10:14434334-14434928(-) (11)	NA	Q9SY66	Protein FAR1-RELATED SEQUENCE 11	AT1G10240.1	FAR1-related sequence 11 	LOC_Os04g36590.1	"transposon protein, putative, unclassified, expressed"	Medtr2g038970.1	"FAR1; Zinc finger, SWIM-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209034.1.S1_at	A	A1TS	POPTR_0010s15060	POPTR_0010s15060 (11)	scaffold_10:14440817-14441257(+) (11)	NA	Q9FFX4	Zinc finger protein KNUCKLES	AT3G58070.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g32920.1	"ZOS1-08 - C2H2 zinc finger protein, expressed"	Medtr2g038950.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.209035.1.S1_at	A	A1TS	POPTR_0010s15070	POPTR_0010s15070 (11)	scaffold_10:14443025-14443798(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209036.1.S1_at	A	A1TS	POPTR_0010s15080	POPTR_0010s15080 (11)	scaffold_10:14450814-14451369(+) (11)	NA	NA	NA	AT3G58650.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 2350 Blast hits to 1412 proteins in 248 species: Archae - 0; Bacteria - 487; Metazoa - 577; Fungi - 236; Plants - 184; Viruses - 4; Other Eukaryotes - 862 (source: NCBI BLink). 	LOC_Os03g19080.3	expressed protein	Medtr2g038920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209037.1.S1_at	A	A1MS	POPTR_0010s15110	POPTR_0010s15110 (11)	scaffold_10:14470994-14471515(-) (11)	NA	Q9LSQ2	"Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial"	AT3G16890.1	pentatricopeptide (PPR) domain protein 40 	LOC_Os12g37100.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr2g038870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209038.1.S1_at	A	A1TS	POPTR_0010s15130	POPTR_0010s15130 (11)	scaffold_10:14482513-14482565(-) (11)	NA	Q9FGY1	Beta-D-xylosidase 1	AT5G49360.1	beta-xylosidase 1 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.209038.1.S1_s_at	A	A1TS	POPTR_0010s15130	POPTR_0010s15130 (11)	scaffold_10:14482611-14483092(-) (11)	NA	Q9FGY1	Beta-D-xylosidase 1	AT5G49360.1	beta-xylosidase 1 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.209039.1.S1_at	A	A1MS	POPTR_0010s15140	POPTR_0010s15140 (11)	scaffold_10:14493821-14494340(-) (11)	NA	NA	NA	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g19240.1	"AMP-binding enzyme, putative, expressed"	Medtr8g138110.1	AMP-dependent synthetase and ligase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209040.1.S1_at	A	A1MS	POPTR_0010s15160	POPTR_0010s15160 (10)	scaffold_10:14513713-14514705(+) (10)	NA	O23463	Calmodulin-binding transcription activator 5	AT4G16150.1	calmodulin binding;transcription regulators 	LOC_Os07g30774.1	"calmodulin-binding transcription activator 5, putative, expressed"	Medtr2g038790.1	IQ calmodulin-binding region; CG-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209045.1.S1_at	A	A1TS	POPTR_0010s15240	POPTR_0010s15240 (11)	scaffold_10:14567437-14569388(+) (11)	NA	Q32P73	DNA-directed RNA polymerase II subunit RPB9	AT4G16265.1	RNA polymerases M/15 Kd subunit 	LOC_Os12g37370.1	"DNA-directed RNA polymerase II subunit RPB9, putative, expressed"	Medtr2g038620.1	"DNA-directed RNA polymerase, subunit C11/M/9 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0003899|DNA-directed RNA polymerase activity||GO:0008270|zinc ion binding	NA
PtpAffx.209047.1.S1_at	A	A1TS	POPTR_0010s15260	POPTR_0010s15260 (11)	scaffold_10:14590499-14590556(-) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g038600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209047.1.S1_x_at	A	A1TS	POPTR_0010s15260	POPTR_0010s15260 (11)	scaffold_10:14590458-14590624(-) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g038600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209048.1.S1_at	A	A1TS	POPTR_0010s15260	POPTR_0010s15260 (11)	scaffold_10:14591363-14591635(-) (11)	POPTR_0008s10630 (6)	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g038600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209049.1.S1_at	A	A1TS	POPTR_0010s15300	POPTR_0010s15300 (11)	scaffold_10:14622064-14622965(+) (11)	NA	Q9XGI7	Nicotianamine synthase	AT1G09240.1	nicotianamine synthase 3 	LOC_Os07g48980.1	"nicotianamine synthase, putative, expressed"	Medtr2g038330.1	Nicotianamine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0030418|nicotianamine biosynthetic process||GO:0044106|cellular amine metabolic process	GO:0030410|nicotianamine synthase activity	NA
PtpAffx.20905.1.S1_at	A	A1TS	POPTR_0018s06060	POPTR_0018s06060 (10)	scaffold_18:5717748-5718148(+) (10)	NA	Q56YU0	Aldehyde dehydrogenase family 2 member C4	AT3G24503.1	aldehyde dehydrogenase 2C4 	LOC_Os01g40860.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g158670.1	hypothetical protein 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.209050.1.S1_at	A	A1TS	POPTR_0010s15310	POPTR_0010s15310 (9)	scaffold_10:14624361-14624571(+) (11)	NA	O80483	Nicotianamine synthase 3	AT1G09240.1	nicotianamine synthase 3 	LOC_Os07g48980.1	"nicotianamine synthase, putative, expressed"	Medtr2g038330.1	Nicotianamine synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209051.1.S1_at	A	A1TS	POPTR_0010s15310	POPTR_0010s15310 (11)	scaffold_10:14624932-14625049(+) (11)//scaffold_10:14638664-14638776(-) (9)	NA	O80483	Nicotianamine synthase 3	AT1G09240.1	nicotianamine synthase 3 	LOC_Os07g48980.1	"nicotianamine synthase, putative, expressed"	Medtr2g038330.1	Nicotianamine synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209053.1.S1_at	A	A1TS	POPTR_0010s15330	POPTR_0010s15330 (11)	scaffold_10:14639879-14640399(-) (11)	NA	Q8S4W7	DELLA protein GAI1	AT1G66350.1	RGA-like 1 	LOC_Os11g31100.1	"gibberellin response modulator protein, putative"	Medtr2g038350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209054.1.S1_at	A	A1TS	POPTR_0010s15340	POPTR_0010s15340 (10)	scaffold_10:14642404-14642920(-) (10)	NA	Q9C8Y3	DELLA protein RGL1	AT1G66350.1	RGA-like 1 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr2g038340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209055.1.S1_at	A	A1TS	POPTR_0010s15350	POPTR_0010s15350 (11)	scaffold_10:14646106-14646609(-) (11)	NA	Q8S4W7	DELLA protein GAI1	AT3G03450.1	RGA-like 2 	LOC_Os11g31100.1	"gibberellin response modulator protein, putative"	Medtr2g038340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209056.1.S1_at	A	A1TS	POPTR_0010s15360	POPTR_0010s15360 (11)	scaffold_10:14651656-14652141(-) (11)	NA	Q8S4W7	DELLA protein GAI1	AT3G03450.1	RGA-like 2 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr2g038340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209057.1.S1_at	A	A1TS	POPTR_0010s15370	POPTR_0010s15370 (11)	scaffold_10:14657407-14657949(-) (11)	NA	Q6EI06	DELLA protein GAIP	AT1G66350.1	RGA-like 1 	LOC_Os11g31100.1	"gibberellin response modulator protein, putative"	Medtr2g038340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209058.1.S1_at	A	A1TS	POPTR_0010s15381	POPTR_0010s15381 (11)	scaffold_10:14660957-14661828(+) (11)	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209059.1.S1_at	A	A1TS	POPTR_0010s15400	POPTR_0010s15400 (11)	scaffold_10:14664967-14666651(-) (11)	NA	NA	NA	AT3G06660.1	PAPA-1-like family protein / zinc finger (HIT type) family protein 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209060.1.S1_at	A	A1TS	POPTR_0010s15420	POPTR_0010s15420 (10)	scaffold_10:14673446-14673986(-) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50140.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209062.1.S1_at	A	A1TS	POPTR_0010s15440	POPTR_0010s15440 (11)	scaffold_10:14677701-14678507(-) (11)	NA	NA	NA	AT3G17030.1	Nucleic acid-binding proteins superfamily 	LOC_Os03g61700.1	expressed protein	Medtr8g137660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209063.1.S1_at	A	A1TS	POPTR_0010s15440	POPTR_0010s15440 (9)	scaffold_10:14681129-14681802(-) (10)	NA	NA	NA	AT3G17030.1	Nucleic acid-binding proteins superfamily 	LOC_Os03g61700.1	expressed protein	Medtr8g137660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209064.1.S1_at	A	A1TS	POPTR_0010s15450	POPTR_0010s15450 (11)	scaffold_10:14686106-14686598(-) (11)	NA	Q94A16	"Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial"	AT3G66654.2	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g29390.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.209065.1.S1_at	A	A1TS	POPTR_0010s15480	POPTR_0010s15480 (11)	scaffold_10:14702373-14702881(+) (11)	NA	NA	NA	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g55530.1	"HLS, putative, expressed"	Medtr8g137620.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.209066.1.S1_at	A	A1TS	POPTR_0010s15520	POPTR_0010s15520 (11)	scaffold_10:14719103-14719626(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g137570.1	Fip1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209067.1.S1_at	A	A1TS	POPTR_0010s15540	POPTR_0010s15540 (11)	scaffold_10:14729703-14730444(+) (11)	NA	NA	NA	AT1G67620.1	Lojap-related protein 	LOC_Os12g13824.2	expressed protein	Medtr3g103350.1	Iojap-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209068.1.S1_at	A	A1TS	POPTR_0010s15550	POPTR_0010s15550 (11)	scaffold_10:14731753-14732510(-) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.2	Protein kinase superfamily protein 	LOC_Os01g49529.2	"OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093610.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209069.1.S1_at	A	A1TS	POPTR_0010s15570	POPTR_0010s15570 (11)	scaffold_10:14735990-14736558(-) (11)	NA	Q9SR05	Receptor-like protein kinase ANXUR1	AT3G04690.1	Malectin/receptor-like protein kinase family protein 	LOC_Os05g20150.1	"TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209070.1.S1_at	A	A1TS	POPTR_0010s15590	POPTR_0010s15590 (10)	scaffold_10:14751174-14752192(+) (10)	NA	Q54YA0	Probable ATP-citrate synthase	AT5G49460.1	ATP citrate lyase subunit B 2 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.209071.1.S1_at	A	A1MS	POPTR_0010s15600	POPTR_0010s15600 (10)	scaffold_10:14759275-14761149(+) (10)	NA	P29130	Phytochrome B	AT2G18790.1	phytochrome B 	LOC_Os03g19590.1	"phytochrome B, putative, expressed"	Medtr2g038110.1	Bacteriophytochrome; ; ; 	"GO:0007165|signal transduction||GO:0023052|signaling||GO:0007600|sensory perception||GO:0018298|protein-chromophore linkage||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0008020|G-protein coupled photoreceptor activity||GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.209072.1.S1_at	A	A1TS	POPTR_0010s15610	POPTR_0010s15610 (11)	scaffold_10:14771173-14771671(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G06620.1	PAS domain-containing protein tyrosine kinase family protein 	LOC_Os12g37570.1	"protein kinase family protein, putative, expressed"	Medtr8g137470.1	PAS; Tyrosine protein kinase 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209072.1.S1_s_at	A	A2TS	POPTR_0008s10460	POPTR_0008s10460 (11)//POPTR_0010s15610 (11)	scaffold_10:14770360-14771694(+) (11)//scaffold_8:6545152-6546540(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G49470.3	PAS domain-containing protein tyrosine kinase family protein 	LOC_Os12g37570.1	"protein kinase family protein, putative, expressed"	Medtr8g137470.1	PAS; Tyrosine protein kinase 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209074.1.S1_at	A	A1TS	POPTR_0010s15630	POPTR_0010s15630 (11)	scaffold_10:14781735-14783390(+) (11)	NA	Q9LSP0	Peroxidase 29	AT3G17070.1	Peroxidase family protein 	NA	NA	Medtr8g147160.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209075.1.S1_at	A	A1TS	POPTR_0010s15650	POPTR_0010s15650 (10)	scaffold_10:14790902-14791432(+) (11)	NA	Q9LUQ5	Probable ubiquitin-conjugating enzyme E2 25	AT3G15355.1	ubiquitin-conjugating enzyme 25 	LOC_Os01g13280.1	"ubiquitin conjugating enzyme protein, putative, expressed"	Medtr7g047340.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.209076.1.S1_at	A	A1TS	POPTR_0010s15655	POPTR_0010s15655 (11)	scaffold_10:14794064-14794831(-) (11)	NA	Q93XK2	Stachyose synthase	AT5G40390.1	Raffinose synthase family protein 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr4g136550.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209077.1.S1_at	A	A1MS	POPTR_0010s15670	POPTR_0010s15670 (10)	scaffold_10:14808938-14810295(+) (10)	NA	NA	NA	AT4G16180.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g19690.1	expressed protein	Medtr8g137290.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209078.1.S1_at	A	A1TS	POPTR_0010s15670	POPTR_0010s15670 (10)	scaffold_10:14815131-14815312(+) (10)	NA	NA	NA	AT4G16180.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g19690.1	expressed protein	Medtr8g137290.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209078.1.S1_s_at	A	A1TS	POPTR_0010s15670	POPTR_0010s15670 (11)	scaffold_10:14814602-14815138(+) (11)	NA	NA	NA	AT4G16180.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g19690.1	expressed protein	Medtr8g137290.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20908.1.S1_at	A	A1TS	POPTR_0017s10730	POPTR_0017s10730 (11)	scaffold_17:10243978-10245172(+) (11)	NA	Q7DLS1	Proteasome subunit beta type-7-B	AT5G40580.2	20S proteasome beta subunit PBB2 	LOC_Os05g09490.2	"peptidase, T1 family, putative, expressed"	Medtr7g032520.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.209080.1.S1_at	A	A1TS	POPTR_0010s15700	POPTR_0010s15700 (11)	scaffold_10:14833522-14833936(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209080.1.S1_s_at	A	A1TS	POPTR_0010s15700	POPTR_0010s15700 (11)	scaffold_10:14833203-14833444(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209082.1.S1_at	A	A1MS	POPTR_0010s15760	POPTR_0010s15760 (9)	scaffold_10:14883942-14884753(+) (11)	NA	O23474	Peroxidase 40	AT4G16270.1	Peroxidase superfamily protein 	LOC_Os08g20730.1	"peroxidase precursor, putative, expressed"	Medtr8g136930.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.209083.1.S1_at	A	A1TS	POPTR_0010s15770	POPTR_0010s15770 (11)	scaffold_10:14889440-14891239(-) (11)	NA	O04425	Flowering time control protein FCA	AT4G16280.2	RNA binding;abscisic acid binding 	LOC_Os09g03610.2	"flowering time control protein FCA, putative, expressed"	Medtr8g136920.1	RNA-binding region RNP-1 (RNA recognition motif); WW/Rsp5/WWP 	NA	GO:0003676|nucleic acid binding||GO:0005515|protein binding	NA
PtpAffx.209084.1.S1_at	A	A1TS	POPTR_0010s15860	POPTR_0010s15860 (11)	scaffold_10:14956293-14956873(+) (11)	NA	Q9M302	Pentatricopeptide repeat-containing protein At3g48810	AT3G48810.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g04160.1	"pentatricopeptide containing protein, putative"	Medtr1g039940.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209086.1.S1_at	A	A1TS	POPTR_0010s15880	POPTR_0010s15880 (11)	scaffold_10:14962759-14964078(-) (11)	NA	Q6Y2X3	DnaJ homolog subfamily C member 14	AT5G49580.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g61730.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g037620.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.209087.1.S1_at	A	A1TS	POPTR_0010s15890	POPTR_0010s15890 (11)	scaffold_10:14972654-14973247(-) (11)	NA	Q9FGY4	F-box protein At5g49610	AT5G49610.1	F-box family protein 	LOC_Os02g35560.1	"OsFBX53 - F-box domain containing protein, expressed"	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209088.1.S1_at	A	A1TS	POPTR_0010s15900	POPTR_0010s15900 (11)	scaffold_10:14976786-14977253(+) (11)	NA	NA	NA	AT5G49600.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209090.1.S1_at	A	A1TS	POPTR_0010s15920	POPTR_0010s15920 (11)	scaffold_10:14984709-14986219(-) (11)	NA	Q9LSM9	Serine carboxypeptidase-like 33	AT3G17180.1	serine carboxypeptidase-like 33 	LOC_Os05g06660.1	"OsSCP26 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g014510.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.209090.1.S1_s_at	A	A1TS	POPTR_0010s15920	POPTR_0010s15920 (11)	scaffold_10:14985407-14986170(-) (11)	NA	Q9LSM9	Serine carboxypeptidase-like 33	AT3G17180.1	serine carboxypeptidase-like 33 	LOC_Os05g06660.1	"OsSCP26 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g014510.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.209091.1.S1_at	A	A1TS	POPTR_0010s15940	POPTR_0010s15940 (11)	scaffold_10:15001239-15001412(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209091.1.S1_x_at	A	A1TS	POPTR_0010s15940	POPTR_0010s15940 (11)	scaffold_10:15001138-15001412(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209092.1.S1_at	A	A1TS	POPTR_0010s15960	POPTR_0010s15960 (11)	scaffold_10:15026178-15026579(-) (11)	NA	NA	NA	AT5G24460.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os06g49780.1	expressed protein	Medtr3g122610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209093.1.S1_at	A	A1TS	POPTR_0010s15980	POPTR_0010s15980 (9)	scaffold_10:15072995-15074968(+) (11)	NA	Q8RWB8	E3 ubiquitin-protein ligase UPL6	AT3G17205.3	ubiquitin protein ligase 6 	LOC_Os05g06690.2	"HECT-domain domain containing protein, expressed"	Medtr2g037340.1	IQ calmodulin-binding region; HECT 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.209094.1.S1_at	A	A1TS	POPTR_0010s15990	POPTR_0010s15990 (11)	scaffold_10:15076408-15077727(+) (11)	NA	Q8CCP0	Serologically defined colon cancer antigen 1 homolog	AT5G49930.1	zinc knuckle (CCHC-type) family protein 	LOC_Os12g37720.1	"zinc knuckle family protein, expressed"	Medtr2g037320.1	"Zinc finger, CCHC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209095.1.S1_at	A	A1TS	POPTR_0010s16000	POPTR_0010s16000 (11)	scaffold_10:15078733-15079168(+) (11)	NA	O60524	Serologically defined colon cancer antigen 1	AT5G49930.1	zinc knuckle (CCHC-type) family protein 	LOC_Os12g37720.1	"zinc knuckle family protein, expressed"	Medtr2g037320.1	"Zinc finger, CCHC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209096.1.S1_at	A	A1TS	POPTR_0010s16020	POPTR_0010s16020 (11)	scaffold_10:15087138-15088009(+) (11)	NA	O15488	Glycogenin-2	AT2G47180.1	galactinol synthase 1 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.209099.1.S1_at	A	A1MS	POPTR_0010s16140	POPTR_0010s16140 (10)	scaffold_10:15162998-15163043(-) (10)	NA	Q9ASW1	"Probable beta-1,3-galactosyltransferase 16"	AT3G06440.1	Galactosyltransferase family protein 	LOC_Os01g22550.1	"galactosyltransferase family protein, putative, expressed"	Medtr5g044460.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.209099.1.S1_s_at	A	A1TS	POPTR_0010s16140	POPTR_0010s16140 (11)	scaffold_10:15162923-15163479(-) (11)	NA	Q9ASW1	"Probable beta-1,3-galactosyltransferase 16"	AT3G06440.1	Galactosyltransferase family protein 	LOC_Os01g22550.1	"galactosyltransferase family protein, putative, expressed"	Medtr5g044460.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.209100.1.S1_at	A	A1TS	POPTR_0010s16170	POPTR_0010s16170 (9)	scaffold_10:15173273-15174939(-) (11)	NA	NA	NA	AT1G48090.1	calcium-dependent lipid-binding family protein 	LOC_Os02g27110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209102.1.S1_at	A	A1TS	POPTR_0010s16200	POPTR_0010s16200 (11)	scaffold_10:15192071-15192647(-) (11)	NA	Q9M548	DNA (cytosine-5)-methyltransferase DRM2	AT3G17310.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g04330.2	"DNA methyltransferase protein, putative, expressed"	Medtr8g134470.1	"DNA methyl transferase 106, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209103.1.S1_at	A	A1TS	POPTR_0010s16210	POPTR_0010s16210 (11)	scaffold_10:15203158-15204012(-) (11)	NA	Q9Y5A9	YTH domain family protein 2	AT1G48110.2	evolutionarily conserved C-terminal region 7 	LOC_Os03g20180.2	"ECT protein, putative, expressed"	Medtr8g134440.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209104.1.S1_at	A	A1TS	POPTR_0010s16220	POPTR_0010s16220 (11)	scaffold_10:15213484-15214161(-) (11)	NA	Q9SQV1	DEAD-box ATP-dependent RNA helicase 40	AT3G06480.1	DEAD box RNA helicase family protein 	LOC_Os01g07740.3	"DEAD-box ATP-dependent RNA helicase 14, putative, expressed"	Medtr2g036940.1	"WW/Rsp5/WWP; Helicase, C-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.209105.1.S1_at	A	A1TS	POPTR_0010s16230	POPTR_0010s16230 (9)	scaffold_10:15220195-15221369(+) (10)	NA	NA	NA	AT5G15640.1	Mitochondrial substrate carrier family protein 	LOC_Os01g22600.1	"mitochondrial carrier protein, putative, expressed"	Medtr2g036920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209107.1.S1_at	A	A1TS	POPTR_0010s16260	POPTR_0010s16260 (11)	scaffold_10:15241601-15242877(+) (11)	NA	Q6E2Z6	1-Cys peroxiredoxin	AT1G48130.1	1-cysteine peroxiredoxin 1 	LOC_Os07g44430.1	"peroxiredoxin, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209108.1.S1_at	A	A1TS	POPTR_0010s16300	POPTR_0010s16300 (11)	scaffold_10:15272493-15273509(-) (11)	NA	A5PK19	Methyltransferase-like protein 13	AT3G17365.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g40580.2	"methyltransferase domain containing protein, expressed"	Medtr4g089760.1	"Putative methyltransferase KIAA0859 homolog, "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.209109.1.S1_at	A	A1TS	POPTR_0010s16310	POPTR_0010s16310 (11)	scaffold_10:15279894-15280634(+) (11)	NA	Q55FJ0	Probable inactive serine/threonine-protein kinase lvsG	AT5G18525.1	protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases 	LOC_Os01g22390.2	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20911.1.S1_s_at	A	A1TS	POPTR_0016s05650	POPTR_0016s05650 (11)	scaffold_16:3574205-3575088(+) (11)	NA	O81644	Villin-2	AT2G41740.1	villin 2 	LOC_Os03g24220.2	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
PtpAffx.209110.1.S1_s_at	A	A2TS	POPTR_0010s16340	POPTR_0455s00210 (11)//POPTR_0010s16340 (11)	scaffold_10:15307830-15308477(+) (11)//scaffold_455:10533-11180(-) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.209111.1.S1_at	A	A1TS	POPTR_0010s16350	POPTR_0010s16350 (11)	scaffold_10:15310187-15311117(-) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.209112.1.S1_at	A	A1TS	POPTR_0010s16360	POPTR_0010s16360 (11)	scaffold_10:15325577-15325854(-) (11)	NA	Q9SQU6	"Pentatricopeptide repeat-containing protein At3g06430, chloroplastic"	AT3G06430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g19650.3	"PPR2, putative, expressed"	Medtr8g134160.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209112.1.S1_x_at	A	A1TS	POPTR_0010s16360	POPTR_0010s16360 (11)	scaffold_10:15325579-15326027(-) (11)	NA	Q9SQU6	"Pentatricopeptide repeat-containing protein At3g06430, chloroplastic"	AT3G06430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g19650.3	"PPR2, putative, expressed"	Medtr8g134160.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209113.1.S1_at	A	A1TS	POPTR_0010s16410	POPTR_0010s16410 (11)	scaffold_10:15384732-15386650(-) (11)	NA	Q76EJ0	Protein DROOPING LEAF	AT1G69180.1	Plant-specific transcription factor YABBY family protein 	LOC_Os03g11600.2	"YABBY domain containing protein, putative, expressed"	Medtr5g048750.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209114.1.S1_at	A	A1TS	POPTR_0010s16430	POPTR_0010s16430 (11)	scaffold_10:15402187-15403183(-) (11)	NA	Q43147	Cytochrome P450 85A1	AT3G30180.1	brassinosteroid-6-oxidase 2 	LOC_Os03g40540.1	"cytochrome P450, putative, expressed"	Medtr3g008560.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209115.1.S1_at	A	A1TS	POPTR_0010s16480	POPTR_0010s16480 (11)	scaffold_10:15428184-15429215(-) (11)	NA	NA	NA	AT1G69210.1	Uncharacterised protein family UPF0090 	LOC_Os07g06090.1	expressed protein	Medtr5g047630.1	Protein of unknown function DUF150 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209116.1.S1_at	A	A1TS	POPTR_0010s16520	POPTR_0010s16520 (11)	scaffold_10:15449215-15452736(-) (11)	NA	Q9NWL6	Asparagine synthetase domain-containing protein 1	AT2G03667.1	Asparagine synthase family protein 	LOC_Os12g38630.1	"asparagine synthase family protein, expressed"	Medtr4g115280.1	Asparagine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006529|asparagine biosynthetic process	GO:0004066|asparagine synthase (glutamine-hydrolyzing) activity	NA
PtpAffx.209117.1.S1_at	A	A1TS	POPTR_0010s16560	POPTR_0010s16560 (11)	scaffold_10:15487422-15487888(-) (11)	NA	NA	NA	AT2G03630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os07g20270.1	expressed protein	Medtr5g048120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209118.1.S1_at	A	A1MS	POPTR_0010s16610	POPTR_0010s16610 (11)	scaffold_10:15515955-15516392(-) (11)	NA	P0C7R4	Pentatricopeptide repeat-containing protein At1g69290	AT1G69290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g57900.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g047540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209120.1.S1_at	A	A1TS	POPTR_0010s16630	POPTR_0010s16630 (11)	scaffold_10:15530159-15531099(+) (11)	NA	O05235	Uncharacterized hydrolase yugF	AT1G13820.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41080.1	"hydrolase, alpha/beta fold family domain containing protein"	Medtr5g047260.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209122.1.S1_at	A	A1TS	POPTR_0010s16660	POPTR_0010s16660 (11)	scaffold_10:15544983-15546483(+) (11)	NA	Q9FZD1	"Pentatricopeptide repeat-containing protein At1g26460, mitochondrial"	AT1G26460.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40800.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g047060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209125.1.S1_at	A	A1TS	POPTR_0010s16710	POPTR_0010s16710 (11)	scaffold_10:15575306-15575822(-) (11)	NA	NA	NA	AT1G26610.1	C2H2-like zinc finger protein 	NA	NA	Medtr5g046750.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.209126.1.S1_at	A	A1TS	POPTR_0010s16720	POPTR_0010s16720 (11)	scaffold_10:15583375-15584068(-) (11)	NA	NA	NA	AT1G26580.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g31230.2	"MYB family transcription factor, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209127.1.S1_at	A	A1TS	POPTR_0010s16740	POPTR_0010s16740 (11)	scaffold_10:15597186-15598502(-) (11)	NA	Q9FZE0	Beta-glucosidase 40	AT1G26560.1	beta glucosidase 40 	LOC_Os03g11420.1	"Os3bglu6 - beta-glucosidase/beta-fucosidase/beta-galactosidase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.209128.1.S1_at	A	A1TS	POPTR_0010s16770	POPTR_0010s16770 (11)	scaffold_10:15633036-15634576(-) (11)	NA	P53535	"Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic"	AT3G29320.1	"Glycosyl transferase, family 35 "	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr6g014750.1	"Glycosyl transferase, family 35 "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
PtpAffx.209129.1.S1_at	A	A1TS	POPTR_0010s16850	POPTR_0010s16850 (11)	scaffold_10:15676595-15677178(-) (11)	NA	NA	NA	AT1G69330.1	RING/U-box superfamily protein 	LOC_Os03g31320.2	"RING zinc finger protein-like, putative, expressed"	Medtr5g046530.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209130.1.S1_at	A	A1TS	POPTR_0010s16890	POPTR_0010s16890 (11)	scaffold_10:15696408-15697772(+) (11)	NA	A7T167	Protein GDAP2 homolog	AT1G69340.1	appr-1-p processing enzyme family protein 	LOC_Os10g30750.1	"appr-1-p processing enzyme family protein, putative, expressed"	Medtr5g046410.1	"Cellular retinaldehyde-binding/triple function, C-terminal; Appr-1-p processing "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209132.1.S1_at	A	A1TS	POPTR_0010s16920	POPTR_0010s16920 (11)	scaffold_10:15707254-15707708(-) (11)	NA	Q9ZQ74	"Pentatricopeptide repeat-containing protein At2g03380, mitochondrial"	AT2G03380.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g08650.1	"pentatricopeptide, putative, expressed"	Medtr4g115870.1	WD-40 repeat; Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209133.1.S1_at	A	A1TS	POPTR_0010s16940	POPTR_0010s16940 (11)	scaffold_10:15713280-15713968(-) (11)	NA	NA	NA	AT1G13940.1	Plant protein of unknown function (DUF863) 	LOC_Os12g38870.2	expressed protein	Medtr5g046300.1	"Protein of unknown function DUF863, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209134.1.S1_at	A	A1TS	POPTR_0010s16960	POPTR_0010s16960 (11)	scaffold_10:15745625-15746068(+) (11)	NA	NA	NA	AT2G03360.1	Glycosyltransferase family 61 protein 	LOC_Os01g31370.1	"glycosyltransferase, putative, expressed"	Medtr5g046140.1	Protein of unknown function DUF563 	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.209135.1.S1_at	A	A1TS	POPTR_0010s16970	POPTR_0010s16970 (11)	scaffold_10:15749446-15750725(+) (11)	NA	P42738	"Chorismate mutase, chloroplastic"	AT1G69370.1	chorismate mutase 3 	LOC_Os01g55870.1	"chorismate mutase, chloroplast precursor, putative, expressed"	Medtr1g016760.1	Chorismate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209136.1.S1_at	A	A1TS	POPTR_0010s17040	POPTR_0010s17040 (11)	scaffold_10:15790313-15790730(+) (11)	NA	Q9XI90	Probable WRKY transcription factor 4	AT1G13960.1	WRKY DNA-binding protein 4 	LOC_Os12g32250.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr7g011100.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.209137.1.S1_at	A	A1TS	POPTR_0010s17050	POPTR_0010s17050 (11)	scaffold_10:15791597-15793670(-) (11)	NA	NA	NA	AT1G13970.1	Protein of unknown function (DUF1336) 	LOC_Os12g38850.3	"DUF1336 domain containing protein, expressed"	Medtr5g045870.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209138.1.S1_at	A	A1TS	POPTR_0010s17070	POPTR_0010s17070 (11)	scaffold_10:15820911-15821428(-) (11)	NA	NA	NA	AT3G11810.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03330.1); Has 141 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g15520.2	expressed protein	Medtr4g116020.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209139.1.S1_at	A	A1TS	POPTR_0010s17080	POPTR_0010s17080 (11)	scaffold_10:15824485-15824977(+) (11)	NA	NA	NA	AT1G26650.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69430.1); Has 205 Blast hits to 204 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g40470.1	expressed protein	Medtr4g115820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209140.1.S1_at	A	A1TS	POPTR_0010s17090	POPTR_0010s17090 (11)	scaffold_10:15826302-15827044(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209141.1.S1_at	A	A1TS	POPTR_0010s17100	POPTR_0010s17100 (11)	scaffold_10:15837564-15837966(-) (11)	NA	Q75HC2	Protein argonaute 7	AT1G69440.1	Argonaute family protein 	LOC_Os03g33650.1	"AGO7, putative, expressed"	Medtr5g045600.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209144.1.S1_at	A	A1TS	POPTR_0010s17210	POPTR_0010s17210 (11)	scaffold_10:15899126-15899474(-) (11)	NA	Q9XI84	"Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT1G14030.1	Rubisco methyltransferase family protein 	LOC_Os09g24530.1	"ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209145.1.S1_s_at	A	A2TS	POPTR_0010s17220	POPTR_0010s17220 (11)//POPTR_0010s17260 (11)	scaffold_10:15904904-15905332(+) (11)//scaffold_10:15924657-15925083(+) (11)//scaffold_10:15960723-15961000(+) (10)	NA	Q6R8G7	Phosphate transporter PHO1 homolog 3	AT1G14040.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.209147.1.S1_s_at	A	A1TS	POPTR_0010s17250	POPTR_0010s17250 (11)	scaffold_10:15914813-15915074(-) (11)	NA	P94026	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT1G14030.1	Rubisco methyltransferase family protein 	LOC_Os09g24530.1	"ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209148.1.S1_s_at	A	A1TS	POPTR_0010s17250	POPTR_0010s17250 (9)	scaffold_10:15918489-15918777(-) (11)	NA	P94026	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT1G14030.1	Rubisco methyltransferase family protein 	LOC_Os09g24530.1	"ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209149.1.S1_x_at	A	A1TS	POPTR_0010s17260	POPTR_0010s17260 (11)	scaffold_10:15924873-15925506(+) (11)	NA	Q6R8G7	Phosphate transporter PHO1 homolog 3	AT1G14040.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.209150.1.S1_s_at	A	A1MS	POPTR_0010s17270	POPTR_0010s17270 (11)	scaffold_10:15907160-15907412(-) (11)//scaffold_10:15926471-15926730(-) (11)//scaffold_10:15962351-15962610(-) (11)	NA	Q6R8G0	Phosphate transporter PHO1 homolog 10	AT1G69480.1	EXS (ERD1/XPR1/SYG1) family protein 	NA	NA	Medtr7g010590.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209151.1.S1_s_at	A	A1TS	POPTR_0010s17290	POPTR_0010s17290 (11)	scaffold_10:15931876-15932288(-) (11)	NA	NA	NA	AT1G26550.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g24540.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209154.1.S1_at	A	A1TS	POPTR_0010s17330	POPTR_0010s17330 (11)	scaffold_10:15967434-15968309(-) (11)	NA	Q8H1U5	Anaphase-promoting complex subunit 2	AT2G04660.1	anaphase-promoting complex/cyclosome 2 	NA	NA	Medtr7g021920.1	Cullin; N-6 Adenine-specific DNA methylase; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209155.1.S1_at	A	A1TS	POPTR_0010s17340	POPTR_0010s17340 (11)	scaffold_10:15973576-15975593(-) (11)	NA	Q8VDP4	Protein KIAA1967 homolog	AT2G03150.1	ATP/GTP-binding protein family 	LOC_Os06g36710.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr5g045140.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209157.1.S1_at	A	A1TS	POPTR_0010s17370	POPTR_0010s17370 (11)	scaffold_10:15988377-15989295(+) (11)	NA	NA	NA	AT1G69500.1	"cytochrome P450, family 704, subfamily B, polypeptide 1 "	LOC_Os03g07250.1	"cytochrome P450, putative, expressed"	Medtr8g138890.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209158.1.S1_at	A	A1TS	POPTR_0010s17390	POPTR_0010s17390 (11)	scaffold_10:15993589-15994072(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209159.1.S1_at	A	A1TS	POPTR_0010s17410	POPTR_0010s17410 (11)	scaffold_10:15997671-15998188(-) (11)	NA	Q9M353	Cation/H(+) antiporter 20	AT3G53720.1	cation/H+ exchanger 20 	LOC_Os12g42200.1	"ATCHX, putative, expressed"	Medtr7g118240.1	Sodium/hydrogen exchanger 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209160.1.S1_at	A	A1TS	POPTR_0010s17420	POPTR_0010s17420 (11)	scaffold_10:16001277-16001557(+) (11)	NA	NA	NA	AT1G69510.2	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os01g47490.3	"Lg106, putative, expressed"	Medtr5g045000.1	Lg106-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209161.1.S1_at	A	A1TS	POPTR_0010s17430	POPTR_0010s17430 (11)	scaffold_10:16005205-16005535(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.2	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.209161.1.S1_x_at	A	A1TS	POPTR_0010s17430	POPTR_0010s17430 (11)	scaffold_10:16004696-16005534(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.2	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.209162.1.S1_at	A	A1TS	POPTR_0010s17450	POPTR_0010s17450 (10)	scaffold_10:16038363-16039894(-) (10)	NA	P29383	Agamous-like MADS-box protein AGL3	AT2G03060.2	AGAMOUS-like 30 	LOC_Os11g43740.1	"OsMADS68 - MADS-box family gene with MIKC* type-box, expressed"	Medtr5g044830.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.209163.1.S1_at	A	A1TS	POPTR_0010s17470	POPTR_0010s17470 (11)	scaffold_10:16062076-16062662(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G69560.1	myb domain protein 105 	LOC_Os08g33800.1	"MYB family transcription factor, putative"	Medtr4g111830.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209164.1.S1_at	A	A1TS	POPTR_0010s17520	POPTR_0010s17520 (11)	scaffold_10:16089318-16089877(+) (11)	NA	Q9S746	Protein HOTHEAD	AT1G14185.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os09g19930.1	"HOTHEAD precursor, putative, expressed"	Medtr5g044590.1	GMC oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.209165.1.S1_at	A	A1TS	POPTR_0010s17550	POPTR_0010s17550 (11)	scaffold_10:16099494-16099974(+) (11)	NA	NA	NA	AT1G09157.1	Protein of unknown function (DUF679) 	LOC_Os05g48840.1	expressed protein	Medtr5g047290.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209166.1.S1_at	A	A1TS	POPTR_0010s17590	POPTR_0010s17590 (11)	scaffold_10:16116370-16116919(-) (11)	NA	Q8LK93	Pentatricopeptide repeat-containing protein At2g02980	AT2G02980.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g58100.1	"pentatricopeptide, putative, expressed"	Medtr5g044270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209167.1.S1_at	A	A1TS	POPTR_0010s17600	POPTR_0010s17600 (11)	scaffold_10:16121260-16121946(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209168.1.S1_s_at	A	A1TS	POPTR_0010s17650	POPTR_0010s17650 (11)	scaffold_10:16157002-16157289(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G69600.1	zinc finger homeodomain  1 	LOC_Os09g24820.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr7g009640.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209169.1.S1_at	A	A1TS	POPTR_0010s17660	POPTR_0010s17660 (10)	scaffold_10:16159545-16159961(-) (10)	NA	NA	NA	AT2G02955.1	maternal effect embryo arrest 12 	LOC_Os05g28460.1	"MEE12, putative, expressed"	Medtr5g076380.1	"MEE12 ; zinc ion binding taxo, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20917.1.A1_s_at	A	A2TS	POPTR_0012s09780	POPTR_0015s10570 (11)//POPTR_0012s09780 (11)	scaffold_12:10712928-10715648(+) (11)//scaffold_15:11462389-11464849(+) (11)	NA	P54122	Ribonuclease J	AT5G63420.1	RNA-metabolising metallo-beta-lactamase family protein 	LOC_Os02g33610.1	"metallo-beta-lactamase, putative, expressed"	Medtr3g117450.1	"Myb, DNA-binding; Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209170.1.S1_at	A	A1TS	POPTR_0010s17670	POPTR_0010s17670 (11)	scaffold_10:16167759-16167828(-) (11)	NA	Q3KGL4	Uracil-DNA glycosylase	AT3G18630.1	uracil dna glycosylase 	LOC_Os04g57730.1	"uracil-DNA glycosylase, putative, expressed"	Medtr4g104620.1	Uracil-DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209170.1.S1_s_at	A	A1TS	POPTR_0010s17670	POPTR_0010s17670 (11)	scaffold_10:16167621-16167735(-) (11)	NA	Q3KGL4	Uracil-DNA glycosylase	AT3G18630.1	uracil dna glycosylase 	LOC_Os04g57730.1	"uracil-DNA glycosylase, putative, expressed"	Medtr4g104620.1	Uracil-DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209171.1.S1_at	A	A1TS	POPTR_0010s17690	POPTR_0010s17690 (11)	scaffold_10:16183117-16183311(+) (11)	NA	O60100	Probable importin subunit beta-4	AT4G27640.1	ARM repeat superfamily protein 	LOC_Os03g15540.1	"HEAT repeat family protein, putative, expressed"	Medtr2g006800.1	Armadillo-like helical 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.209172.1.S1_at	A	A1TS	POPTR_0010s17700	POPTR_0010s17700 (11)	scaffold_10:16185758-16188498(-) (11)	NA	NA	NA	AT4G33540.1	metallo-beta-lactamase family protein 	LOC_Os02g58270.1	"metallo-beta-lactamase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209173.1.S1_at	A	A1TS	POPTR_0010s17710	POPTR_0010s17710 (11)	scaffold_10:16202740-16202896(+) (11)	NA	P93472	Cell elongation protein diminuto	AT3G19820.3	cell elongation protein / DWARF1 / DIMINUTO (DIM) 	LOC_Os10g25780.1	"FAD-linked oxidoreductase protein, putative, expressed"	NA	NA	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.209175.1.S1_at	A	A1TS	POPTR_0010s17740	POPTR_0010s17740 (11)	scaffold_10:16215141-16215242(-) (11)	NA	Q9BSJ8	Extended synaptotagmin-1	AT3G19830.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g58230.1	"C2 domain containing protein, putative, expressed"	Medtr8g112680.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209175.1.S1_x_at	A	A1TS	POPTR_0010s17740	POPTR_0010s17740 (11)	scaffold_10:16215141-16216393(-) (11)	NA	Q9BSJ8	Extended synaptotagmin-1	AT3G19830.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g58230.1	"C2 domain containing protein, putative, expressed"	Medtr8g112680.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209176.1.S1_at	A	A1TS	POPTR_0010s17750	POPTR_0010s17750 (11)	scaffold_10:16229949-16230516(+) (11)	NA	O14776	Transcription elongation regulator 1	AT3G19840.1	pre-mRNA-processing protein 40C 	LOC_Os10g34380.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g101290.1	FF 	NA	GO:0005515|protein binding	NA
PtpAffx.209177.1.S1_at	A	A1TS	POPTR_0010s17750	POPTR_0010s17750 (11)	scaffold_10:16233784-16235967(+) (11)	NA	O14776	Transcription elongation regulator 1	AT3G19840.1	pre-mRNA-processing protein 40C 	LOC_Os10g34380.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g101290.1	FF 	NA	GO:0005515|protein binding	NA
PtpAffx.209178.1.S1_at	A	A1TS	POPTR_0010s17750	POPTR_0010s17750 (11)	scaffold_10:16237224-16237912(+) (11)	NA	O14776	Transcription elongation regulator 1	AT3G19840.1	pre-mRNA-processing protein 40C 	LOC_Os10g34380.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g101290.1	FF 	NA	GO:0005515|protein binding	NA
PtpAffx.209180.1.S1_at	A	A1TS	POPTR_0010s17780	POPTR_0010s17780 (11)	scaffold_10:16248344-16250245(+) (11)	NA	Q92804	TATA-binding protein-associated factor 2N	AT1G50300.1	TBP-associated factor 15 	LOC_Os09g12800.1	"zinc finger Ran-binding domain-containing protein 2, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.209181.1.S1_at	A	A1MS	POPTR_0010s17790	POPTR_0010s17790 (11)	scaffold_10:16251712-16251847(+) (11)	NA	P0CH05	Polyubiquitin	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr8g021190.3	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209182.1.S1_at	A	A1TS	POPTR_0010s17800	POPTR_0010s17800 (11)	scaffold_10:16256016-16257823(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT3G19850.1	Phototropic-responsive NPH3 family protein 	LOC_Os04g57800.1	"BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g009390.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.209183.1.S1_at	A	A1TS	POPTR_0010s17810	POPTR_0010s17810 (11)	scaffold_10:16263564-16264083(+) (11)	NA	A2Z9A6	UPF0496 protein 4	AT1G01550.2	Protein of unknown function (DUF793) 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209184.1.S1_at	A	A1TS	POPTR_0010s17820	POPTR_0010s17820 (11)	scaffold_10:16266428-16270484(-) (11)	NA	Q58FY4	U-box domain-containing protein 63	AT3G19895.1	RING/U-box superfamily protein 	LOC_Os02g58280.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209185.1.S1_at	A	A1TS	POPTR_0010s17830	POPTR_0010s17830 (11)	scaffold_10:16279984-16280472(-) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr7g043380.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.209186.1.S1_at	A	A1MS	POPTR_0010s17840	POPTR_0010s17840 (10)	scaffold_10:16285726-16286955(-) (10)	NA	Q9SAJ3	"ATP-dependent zinc metalloprotease FTSH 12, chloroplastic"	AT1G79560.1	FTSH protease 12 	NA	NA	Medtr8g065640.1	Peptidase M41; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209187.1.S1_at	A	A1TS	POPTR_0010s17880	POPTR_0010s17880 (11)	scaffold_10:16319007-16319569(+) (11)	NA	Q40588	L-ascorbate oxidase	AT4G39830.1	Cupredoxin superfamily protein 	LOC_Os09g20090.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.209188.1.S1_at	A	A1TS	POPTR_0010s17900	POPTR_0010s17900 (11)	scaffold_10:16332406-16332949(+) (11)	NA	Q14839	Chromodomain-helicase-DNA-binding protein 4	AT5G44800.1	chromatin remodeling 4 	LOC_Os07g31450.1	"CHR4/MI-2-LIKE, putative, expressed"	Medtr4g165650.1	"SNF2-related; Chromo; Helicase, C-terminal; Zinc finger, FYVE/PHD-type; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209189.1.S1_at	A	A1TS	POPTR_0010s17910	POPTR_0010s17910 (11)	scaffold_10:16334799-16335232(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209190.1.S1_at	A	A1TS	POPTR_0010s17920	POPTR_0010s17920 (11)	scaffold_10:16335709-16338046(-) (11)	NA	NA	NA	AT1G16290.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). "	LOC_Os02g07480.1	"transglycosylase SLT domain containing protein, expressed"	Medtr2g077950.1	"Contains a PF|01464 Transglycosylase SLT domain., putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209191.1.S1_at	A	A1TS	POPTR_0010s17940	POPTR_0010s17940 (11)	scaffold_10:16360485-16360992(-) (11)	NA	Q92620	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	AT5G13010.1	RNA helicase family protein 	LOC_Os07g32430.1	"pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed"	Medtr2g117980.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.209192.1.S1_at	A	A1TS	POPTR_0010s17940	POPTR_0010s17940 (11)	scaffold_10:16366907-16368189(-) (11)	NA	Q92620	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	AT5G13010.1	RNA helicase family protein 	LOC_Os07g32430.1	"pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed"	Medtr2g117980.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.209193.1.S1_at	A	A2TS	POPTR_0010s17980	POPTR_0010s18000 (11)//POPTR_0010s17980 (11)	scaffold_10:16390029-16391359(+) (11)//scaffold_10:16402246-16403561(+) (11)	NA	Q0WU02	Metal tolerance protein 10	AT1G16310.1	Cation efflux family protein 	LOC_Os01g03914.2	"cation efflux family protein, putative, expressed"	Medtr3g110280.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.209194.1.S1_at	A	A1TS	POPTR_0010s18010	POPTR_0010s18010 (11)	scaffold_10:16410166-16410473(+) (11)	NA	NA	NA	AT1G79510.2	Uncharacterized conserved protein (DUF2358) 	LOC_Os04g52330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209195.1.S1_at	A	A1TS	POPTR_0010s18020	POPTR_0010s18020 (10)	scaffold_10:16421731-16422097(+) (10)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT2G40980.1	Protein kinase superfamily protein 	LOC_Os02g29890.1	expressed protein	Medtr7g104330.1	"Tyrosine protein kinase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209196.1.S1_at	A	A1TS	POPTR_0010s18030	POPTR_0010s18030 (11)	scaffold_10:16422848-16423914(-) (11)	NA	Q9SA32	Putative cyclin-B3-1	AT1G16330.1	cyclin b3;1 	LOC_Os01g59120.1	"cyclin, putative, expressed"	Medtr7g106110.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.209197.1.S1_at	A	A1TS	POPTR_0010s18050	POPTR_0010s18050 (11)	scaffold_10:16435641-16436712(+) (11)	NA	O81123	Zinc transporter 1	AT3G12750.1	zinc transporter 1 precursor 	LOC_Os07g12890.2	"metal cation transporter, putative, expressed"	Medtr3g107170.2	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.209198.1.S1_at	A	A1TS	POPTR_0010s18070	POPTR_0010s18070 (10)	scaffold_10:16446807-16446963(+) (11)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT1G79480.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os09g38784.1	"retrotransposon protein, putative, unclassified"	Medtr1g147220.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209199.1.S1_at	A	A1TS	POPTR_0010s18080	POPTR_0010s18080 (11)	scaffold_10:16450362-16451720(+) (11)	NA	Q9SA34	Probable inosine-5'-monophosphate dehydrogenase	AT1G16350.1	Aldolase-type TIM barrel family protein 	LOC_Os03g56800.1	"CBS domain containing membrane protein, putative, expressed"	Medtr7g100530.1	IMP dehydrogenase; 	GO:0055114|oxidation reduction	GO:0003824|catalytic activity	NA
PtpAffx.209199.1.S1_s_at	A	A1TS	POPTR_0010s18080	POPTR_0010s18080 (11)	scaffold_10:16451767-16452541(+) (11)	NA	Q9SA34	Probable inosine-5'-monophosphate dehydrogenase	AT1G16350.1	Aldolase-type TIM barrel family protein 	LOC_Os03g56800.1	"CBS domain containing membrane protein, putative, expressed"	Medtr7g100530.1	IMP dehydrogenase; 	GO:0055114|oxidation reduction	GO:0003824|catalytic activity	NA
PtpAffx.2092.1.A1_at	A	A1TS	POPTR_0008s21130	POPTR_0008s21130 (11)	scaffold_8:15288533-15289796(-) (11)	NA	O42877	rRNA-processing protein fcf2	AT5G30495.1	Fcf2 pre-rRNA processing protein 	LOC_Os02g49780.1	expressed protein	Medtr5g089180.1	Fcf2 pre-rRNA processing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20920.1.A1_s_at	A	A1TS	POPTR_0008s10190	POPTR_0008s10190 (11)	scaffold_8:6385518-6386099(-) (11)	NA	Q96PB1	CAS1 domain-containing protein 1	AT3G06550.3	O-acetyltransferase family protein 	LOC_Os03g19970.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209200.1.S1_at	A	A1MS	POPTR_0010s18090	POPTR_0010s18090 (9)	scaffold_10:16453418-16454973(-) (9)	NA	Q39548	"Ent-kaur-16-ene synthase, chloroplastic"	AT1G79460.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os04g52230.1	"ent-kaurene synthase, chloroplast precursor, putative, expressed"	Medtr3g074040.1	Terpene synthase-like; Terpenoid synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209201.1.S1_at	A	A1TS	POPTR_0010s18110	POPTR_0010s18110 (11)	scaffold_10:16461068-16462405(-) (11)	NA	Q9LTW0	ALA-interacting subunit 1	AT3G12740.1	ALA-interacting subunit 1 	LOC_Os06g45430.1	"cell cycle control protein, putative, expressed"	Medtr2g122470.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.209202.1.S1_s_at	A	A1TS	POPTR_0010s18170	POPTR_0010s18170 (11)	scaffold_10:16523395-16523682(+) (11)	NA	Q8LPH6	Transcription factor MYB86	AT3G12720.1	myb domain protein 67 	LOC_Os07g31470.1	"MYB family transcription factor, putative, expressed"	Medtr2g085800.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209203.1.S1_at	A	A1TS	POPTR_0010s18180	POPTR_0010s18180 (11)	scaffold_10:16530072-16530535(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT1G54330.1	NAC domain containing protein 20 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr2g085850.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.209204.1.S1_at	A	A1TS	POPTR_0010s18220	POPTR_0010s18220 (11)	scaffold_10:16554795-16555113(+) (11)	NA	A8JUV0	Protein strawberry notch	AT1G79350.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os08g12680.1	"zinc finger domain, LSD1 subclass family protein, expressed"	Medtr6g093190.1	"EMB1135 ; DNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209205.1.S1_at	A	A1TS	POPTR_0010s18230	POPTR_0010s18230 (10)	scaffold_10:16559463-16560859(+) (10)	POPTR_0008s08070 (6)	Q7TNB8	Protein strawberry notch homolog 2	AT1G79350.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g52020.1	"PHD-finger domain containing protein, putative, expressed"	Medtr6g093190.1	"EMB1135 ; DNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209206.1.S1_at	A	A1TS	POPTR_0010s18230	POPTR_0010s18230 (11)	scaffold_10:16563687-16565230(+) (11)	NA	Q7TNB8	Protein strawberry notch homolog 2	AT1G79350.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g52020.1	"PHD-finger domain containing protein, putative, expressed"	Medtr6g093190.1	"EMB1135 ; DNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209207.1.S1_at	A	A1MS	POPTR_0010s18230	POPTR_0010s18230 (10)	scaffold_10:16567999-16568268(+) (11)	NA	Q7TNB8	Protein strawberry notch homolog 2	AT1G79350.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g52020.1	"PHD-finger domain containing protein, putative, expressed"	Medtr6g093190.1	"EMB1135 ; DNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209208.1.S1_at	A	A1TS	POPTR_0010s18250	POPTR_0010s18250 (11)	scaffold_10:16578205-16578504(-) (11)	NA	Q9SY33	Peroxidase 7	AT1G30870.1	Peroxidase superfamily protein 	LOC_Os07g31610.1	"peroxidase precursor, putative, expressed"	Medtr8g148530.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.209209.1.S1_at	A	A1TS	POPTR_0010s18270	POPTR_0010s18270 (11)	scaffold_10:16588531-16589793(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G44680.1	DNA glycosylase superfamily protein 	LOC_Os01g58550.1	"methyladenine glycosylase, putative, expressed"	Medtr2g085500.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.209210.1.S1_at	A	A1TS	POPTR_0010s18290	POPTR_0010s18290 (11)	scaffold_10:16592338-16592665(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209211.1.S1_s_at	A	A1TS	POPTR_0010s18300	POPTR_0010s18300 (11)	scaffold_10:16593988-16594345(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT1G79270.1	evolutionarily conserved C-terminal region 8 	LOC_Os01g48790.1	"YT521-B-like family domain containing protein, expressed"	Medtr2g085380.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209212.1.S1_at	A	A2TS	POPTR_0010s18320	POPTR_0010s18340 (10)//POPTR_0010s18320 (10)	scaffold_10:16608272-16614101(+) (11)//scaffold_10:16614362-16615270(+) (9)	NA	Q9KG32	Uncharacterized isomerase BH0283	AT4G02860.1	Phenazine biosynthesis PhzC/PhzF protein 	LOC_Os01g16146.1	"phenazine biosynthesis protein, putative, expressed"	Medtr1g086630.1	Phenazine biosynthesis PhzC/PhzF protein 	GO:0009058|biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.209213.1.S1_at	A	A1TS	POPTR_0010s18330	POPTR_0010s18330 (11)	scaffold_10:16610876-16611133(+) (11)	NA	NA	NA	AT3G06130.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	AC233679_1.1	Heavy metal transport/detoxification protein AC233679.1 2787-4960 E EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.209214.1.S1_at	A	A1TS	POPTR_0010s18350	POPTR_0010s18350 (11)	scaffold_10:16620778-16621269(+) (11)	NA	A2YBX5	Protein kinase G11A	AT1G79250.2	AGC kinase 1.7 	LOC_Os05g14750.1	"AGC_PVPK_like_kin82y.12 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g080720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209215.1.S1_at	A	A1TS	POPTR_0010s18370	POPTR_0010s18370 (10)	scaffold_10:16628804-16629406(+) (10)	NA	O32107	Uncharacterized membrane protein yuiD	AT3G12685.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os06g33930.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr2g080680.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209216.1.S1_s_at	A	A1TS	POPTR_0010s18410	POPTR_0010s18410 (11)	scaffold_10:16656919-16657134(+) (11)	NA	Q6PEI7	CTP synthase 1	AT3G12670.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr2g080630.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.209217.1.S1_at	A	A1TS	POPTR_0010s18420	POPTR_0010s18420 (11)	scaffold_10:16660757-16661111(-) (11)	NA	Q9MA17	Protein SOMBRERO	AT1G79580.3	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g33940.1	"NAC domain containing protein, putative, expressed"	Medtr2g080610.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.209218.1.S1_at	A	A1TS	POPTR_0010s18430	POPTR_0010s18430 (10)	scaffold_10:16669267-16672198(-) (11)	NA	Q9FIV6	"Protease Do-like 10, mitochondrial"	AT5G36950.1	DegP protease 10 	LOC_Os05g34460.1	"OsDegp7 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209219.1.S1_at	A	A1TS	POPTR_0010s18440	POPTR_0010s18440 (11)	scaffold_10:16675607-16676194(-) (11)	NA	NA	NA	AT5G24000.1	Protein of unknown function (DUF819) 	NA	NA	Medtr1g126520.1	Protein of unknown function DUF819 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209220.1.S1_at	A	A1TS	POPTR_0010s18450	POPTR_0010s18450 (11)	scaffold_10:16678930-16679617(+) (11)	NA	NA	NA	AT1G27850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink). 	LOC_Os09g34290.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g025430.1	"En/Spm-like transposon protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209221.1.S1_at	A	A1TS	POPTR_0010s18460	POPTR_0010s18460 (11)	scaffold_10:16685691-16685923(+) (11)	NA	O04479	LOB domain-containing protein 6	AT1G65620.4	Lateral organ boundaries (LOB) domain family protein 	LOC_Os01g66590.3	"DUF260 domain containing protein, putative, expressed"	Medtr5g017910.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209222.1.S1_at	A	A1MS	POPTR_0010s18470	POPTR_0010s18470 (11)	scaffold_10:16696831-16696930(-) (11)	NA	Q9Z160	Conserved oligomeric Golgi complex subunit 1	AT5G16300.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os01g56910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209222.1.S1_x_at	A	A1MS	POPTR_0010s18470	POPTR_0010s18470 (11)	scaffold_10:16696831-16696950(-) (11)	NA	Q9Z160	Conserved oligomeric Golgi complex subunit 1	AT5G16300.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os01g56910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209223.1.S1_at	A	A1TS	POPTR_0010s18470	POPTR_0010s18470 (11)	scaffold_10:16699215-16699715(-) (11)	NA	Q9Z160	Conserved oligomeric Golgi complex subunit 1	AT5G16300.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os01g56910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209224.1.S1_at	A	A1TS	POPTR_0010s18480	POPTR_0010s18480 (11)	scaffold_10:16708922-16709820(+) (11)	NA	Q7XUK4	Endoglucanase 12	AT1G65610.1	Six-hairpin glycosidases superfamily protein 	LOC_Os04g41970.1	"endoglucanase, putative, expressed"	Medtr3g106800.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.209225.1.S1_at	A	A1TS	POPTR_0010s18490	POPTR_0010s18490 (11)	scaffold_10:16713566-16714238(+) (11)	NA	Q84W55	"Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3"	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209226.1.S1_at	A	A1TS	POPTR_0010s18490	POPTR_0010s18490 (10)	scaffold_10:16716719-16718585(+) (11)	NA	Q84W55	"Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3"	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209227.1.S1_s_at	A	A1TS	POPTR_0010s18495	POPTR_0010s18495 (11)	scaffold_10:16721445-16721670(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209229.1.S1_at	A	A1TS	POPTR_0010s18570	POPTR_0010s18570 (11)	scaffold_10:16778271-16781215(+) (11)	NA	Q5ZK33	"LETM1 and EF-hand domain-containing protein 1, mitochondrial"	AT1G65540.1	LETM1-like protein 	LOC_Os02g39550.2	"calcium-binding mitochondrial protein anon-60Da, putative, expressed"	Medtr7g090240.1	LETM1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209230.1.S1_at	A	A1TS	POPTR_0010s18580	POPTR_0010s18580 (9)	scaffold_10:16799077-16800787(+) (9)	NA	NA	NA	AT5G16270.1	sister chromatid cohesion 1 protein 4 	LOC_Os01g67250.2	"Rad21 / Rec8 like protein, putative, expressed"	Medtr7g090210.1	"Rad21/Rec8 like protein, C-terminal; Rad21/Rec8 like protein, N-terminal "	NA	NA	GO:0000228|nuclear chromosome
PtpAffx.209231.1.S1_s_at	A	A2TS	POPTR_0008s07750	POPTR_0010s18650 (11)//POPTR_0008s07750 (11)	scaffold_10:16831696-16832014(-) (11)//scaffold_8:4760099-4760417(+) (11)	NA	Q42807	"Acyl-[acyl-carrier-protein] desaturase, chloroplastic"	AT3G02630.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os04g31070.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr5g024070.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0045300|acyl-[acyl-carrier-protein] desaturase activity	NA
PtpAffx.209232.1.S1_s_at	A	A1TS	POPTR_0010s18670	POPTR_0010s18670 (11)	scaffold_10:16854697-16854944(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209233.1.S1_at	A	A1TS	POPTR_0010s18710	POPTR_0010s18710 (11)	scaffold_10:16879843-16880424(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G65450.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr7g099800.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.209235.1.S1_at	A	A1TS	POPTR_0010s18830	POPTR_0010s18830 (11)	scaffold_10:16951940-16952629(+) (11)	NA	O22927	GDSL esterase/lipase At2g30310	AT2G30310.1	GDSL-like Lipase/Acylhydrolase family protein 	LOC_Os01g61570.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g044320.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209236.1.S1_at	A	A1TS	POPTR_0010s18840	POPTR_0010s18840 (11)	scaffold_10:16955744-16957736(-) (11)	NA	Q6PQQ4	AP2-like ethylene-responsive transcription factor BBM	AT5G17430.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g40070.1	"AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed"	Medtr7g090100.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.209236.1.S1_x_at	A	A1TS	POPTR_0010s18840	POPTR_0010s18840 (11)	scaffold_10:16955744-16957736(-) (11)	NA	Q6PQQ4	AP2-like ethylene-responsive transcription factor BBM	AT5G17430.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g40070.1	"AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed"	Medtr7g090100.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.209237.1.S1_at	A	A1TS	POPTR_0010s18860	POPTR_0010s18860 (11)	scaffold_10:16975994-16976575(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.209238.1.S1_at	A	A1TS	POPTR_0010s18870	POPTR_0010s18870 (11)	scaffold_10:16993572-16994541(+) (11)	NA	Q10HL3	Endoribonuclease Dicer homolog 2a	AT3G03300.3	dicer-like 2 	LOC_Os03g38740.1	"Dicer, putative, expressed"	Medtr2g129960.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0004525|ribonuclease III activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.209240.1.S1_at	A	A1TS	POPTR_0010s18910	POPTR_0010s18910 (11)	scaffold_10:17003229-17003988(-) (11)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT3G56200.1	Transmembrane amino acid transporter family protein 	LOC_Os01g61044.2	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g091190.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209241.1.S1_at	A	A1TS	POPTR_0010s18930	POPTR_0010s18930 (11)	scaffold_10:17016535-17017134(+) (11)	NA	NA	NA	AT3G10980.1	PLAC8 family protein 	LOC_Os05g39730.1	"SAG20, putative, expressed"	Medtr5g091160.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209242.1.S1_at	A	A1TS	POPTR_0010s18950	POPTR_0010s18950 (11)	scaffold_10:17032311-17033120(-) (11)	NA	Q9LYM3	Protein LURP-one-related 14	AT3G56180.1	Protein of unknown function (DUF567) 	LOC_Os07g12730.1	"DUF567 domain containing protein, putative, expressed"	Medtr7g077600.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209243.1.S1_at	A	A1TS	POPTR_0010s18970	POPTR_0010s18970 (11)	scaffold_10:17039864-17040864(-) (11)	NA	Q39635	Uncharacterized 38.1 kDa protein	AT2G40410.2	Staphylococcal nuclease homologue 	LOC_Os01g07200.1	"staphylococcal nuclease homologue, putative, expressed"	Medtr5g091140.1	Thermonuclease active site 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds""||GO:0003676|nucleic acid binding"	NA
PtpAffx.209244.1.S1_s_at	A	A1TS	POPTR_0010s18980	POPTR_0010s18980 (11)	scaffold_10:17047618-17048098(+) (11)	POPTR_0010s18990 (8)	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G49690.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209245.1.S1_at	A	A1TS	POPTR_0010s19020	POPTR_0010s19020 (11)	scaffold_10:17064732-17065164(+) (11)	NA	Q9FYC1	Cation/H(+) antiporter 4	AT5G22900.1	cation/H+ exchanger 3 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr7g043370.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.209246.1.S1_at	A	A1TS	POPTR_0010s19030	POPTR_0010s19030 (11)	scaffold_10:17071098-17071668(+) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr3g097130.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.209247.1.S1_at	A	A1TS	POPTR_0010s19040	POPTR_0010s19040 (11)	scaffold_10:17077198-17077462(+) (11)	NA	NA	NA	AT2G40390.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 75 Blast hits to 75 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os01g07130.1	expressed protein	Medtr5g090980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209247.1.S1_s_at	A	A1TS	POPTR_0010s19040	POPTR_0010s19040 (11)	scaffold_10:17077273-17077790(+) (11)	NA	NA	NA	AT2G40390.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 75 Blast hits to 75 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os01g07130.1	expressed protein	Medtr5g090980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209248.1.S1_at	A	A1TS	POPTR_0010s19070	POPTR_0010s19070 (11)	scaffold_10:17089890-17090470(+) (11)	NA	Q9SCT4	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2	AT3G51740.1	inflorescence meristem receptor-like kinase 2 	LOC_Os03g18630.1	"receptor-like kinase RHG1, putative, expressed"	Medtr5g090940.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.209249.1.S1_at	A	A1TS	POPTR_0010s19100	POPTR_0010s19100 (11)	scaffold_10:17110363-17110762(+) (11)	NA	Q8LFR2	Dehydration-responsive element-binding protein 2C	AT2G40340.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g07120.1	"AP2 domain containing protein, expressed"	Medtr5g090850.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.209250.1.S1_at	A	A1TS	POPTR_0010s19110	POPTR_0010s19110 (10)	scaffold_10:17117522-17118164(+) (10)	NA	O12944	DNA repair and recombination protein RAD54-like (Fragment)	AT3G42670.1	chromatin remodeling 38 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g090790.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.209251.1.S1_at	A	A1TS	POPTR_0010s19110	POPTR_0010s19110 (11)	scaffold_10:17119421-17119968(+) (11)	NA	O12944	DNA repair and recombination protein RAD54-like (Fragment)	AT3G42670.1	chromatin remodeling 38 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g090790.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.209252.1.S1_s_at	A	A2TS	POPTR_0008s07350	POPTR_0008s07350 (11)//POPTR_0010s19110 (11)	scaffold_10:17120197-17120407(+) (11)//scaffold_8:4505001-4505211(-) (11)	NA	O12944	DNA repair and recombination protein RAD54-like (Fragment)	AT5G20420.1	chromatin remodeling 42 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g090790.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.209253.1.S1_at	A	A1TS	POPTR_0010s19130	POPTR_0010s19130 (10)	scaffold_10:17135490-17135526(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209254.1.S1_s_at	A	A1TS	POPTR_0010s19140	POPTR_0010s19140 (11)	scaffold_10:17140260-17140379(-) (11)	NA	NA	NA	AT2G40320.1	TRICHOME BIREFRINGENCE-LIKE 33 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr5g090760.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209256.1.S1_at	A	A1TS	POPTR_0010s19160	POPTR_0010s19160 (11)	scaffold_10:17149864-17151250(+) (11)	NA	P0C7A1	Cytosolic endo-beta-N-acetylglucosaminidase	AT5G05460.1	Glycosyl hydrolase family 85  	LOC_Os05g27960.1	"hydrolase, acting on glycosyl bonds, putative, expressed"	Medtr3g094820.1	"Glycoside hydrolase, family 85 "	NA	GO:0033925|mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	GO:0005737|cytoplasm
PtpAffx.209257.1.S1_at	A	A1TS	POPTR_0010s19170	POPTR_0010s19170 (11)	scaffold_10:17155824-17158595(+) (11)	NA	Q8BX80	Cytosolic endo-beta-N-acetylglucosaminidase	AT3G11040.1	Glycosyl hydrolase family 85  	LOC_Os05g27960.1	"hydrolase, acting on glycosyl bonds, putative, expressed"	Medtr3g094820.1	"Glycoside hydrolase, family 85 "	NA	GO:0033925|mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	GO:0005737|cytoplasm
PtpAffx.209258.1.S1_at	A	A1TS	POPTR_0010s19210	POPTR_0010s19210 (10)	scaffold_10:17191756-17192579(-) (11)	NA	Q9LQU4	Uncharacterized protein At1g14870	AT4G35920.2	PLAC8 family protein 	LOC_Os03g06120.3	"PLAC8 family protein, expressed"	Medtr5g022570.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209259.1.S1_at	A	A1TS	POPTR_0010s19220	POPTR_0010s19220 (11)	scaffold_10:17201645-17202085(+) (11)	NA	NA	NA	AT1G13790.1	XH/XS domain-containing protein 	LOC_Os01g44230.1	"transcription factor X1, putative, expressed"	Medtr5g087360.1	"Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20926.1.S1_s_at	A	A1TS	POPTR_0012s12420	POPTR_0012s12420 (11)	scaffold_12:12755552-12755903(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209261.1.S1_at	A	A1TS	POPTR_0010s19240	POPTR_0010s19240 (11)	scaffold_10:17215059-17215816(+) (11)	NA	Q9SIZ3	Probable methyltransferase PMT23	AT2G40280.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g61250.1	"methyltransferase, putative, expressed"	Medtr5g090650.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.209262.1.S1_at	A	A1TS	POPTR_0010s19260	POPTR_0010s19260 (11)	scaffold_10:17222831-17222945(-) (11)	NA	Q505D1	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	AT2G31820.1	Ankyrin repeat family protein 	LOC_Os01g61330.1	"ankyrin homolog precursor, putative, expressed"	AC146568_12.1	Major sperm protein AC146568.11 67273-69443 E EGN_Mt090430 200	NA	GO:0005198|structural molecule activity	NA
PtpAffx.209262.1.S1_s_at	A	A1TS	POPTR_0010s19260	POPTR_0010s19260 (11)	scaffold_10:17222972-17223284(-) (11)	NA	Q505D1	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	AT2G31820.1	Ankyrin repeat family protein 	LOC_Os01g61330.1	"ankyrin homolog precursor, putative, expressed"	AC146568_12.1	Major sperm protein AC146568.11 67273-69443 E EGN_Mt090430 200	NA	GO:0005198|structural molecule activity	NA
PtpAffx.209263.1.S1_at	A	A1TS	POPTR_0010s19290	POPTR_0010s19290 (11)	scaffold_10:17239861-17240308(-) (11)	NA	Q54CV5	Probable inactive serine/threonine-protein kinase bub1	AT5G05510.1	Mad3/BUB1 homology region 1 	LOC_Os12g03180.1	"Mad3/BUB1 homology region 1 domain containing protein, expressed"	Medtr3g094620.1	Mad3/BUB1 homology region 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209264.1.S1_at	A	A1TS	POPTR_0010s19300	POPTR_0010s19300 (11)	scaffold_10:17249615-17250291(+) (11)	NA	Q6P806	Sorting and assembly machinery component 50 homolog	AT5G05520.1	Outer membrane OMP85 family protein 	LOC_Os05g39390.1	"outer membrane protein, OMP85 family protein, expressed"	Medtr3g094610.1	Bacterial surface antigen (D15) 	NA	NA	GO:0019867|outer membrane
PtpAffx.209265.1.S1_at	A	A1TS	POPTR_0010s19310	POPTR_0010s19310 (11)	scaffold_10:17257810-17258635(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G40260.1	Homeodomain-like superfamily protein 	LOC_Os02g14490.1	"MYB family transcription factor, putative, expressed"	Medtr7g075810.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209266.1.S1_at	A	A1TS	POPTR_0010s19320	POPTR_0010s19320 (11)	scaffold_10:17274769-17274840(+) (11)	NA	NA	NA	AT3G56040.1	UDP-glucose pyrophosphorylase 3 	LOC_Os05g39230.1	"low photochemical bleaching 1 protein, putative, expressed"	Medtr3g094600.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209267.1.S1_at	A	A1TS	POPTR_0010s19330	POPTR_0010s19330 (11)	scaffold_10:17276124-17276584(-) (11)	NA	Q9SNC6	U-box domain-containing protein 13	AT3G46510.1	plant U-box 13 	LOC_Os02g13960.1	"spotted leaf 11, putative, expressed"	Medtr5g090510.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.209268.1.S1_at	A	A1TS	POPTR_0010s19340	POPTR_0010s19340 (11)	scaffold_10:17286022-17286305(+) (11)	NA	Q9SRL8	LOB domain-containing protein 21	AT3G11090.1	LOB domain-containing protein 21 	LOC_Os01g07480.2	"DUF260 domain containing protein, putative, expressed"	Medtr5g090500.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209269.1.S1_at	A	A1TS	POPTR_0010s19350	POPTR_0010s19350 (11)	scaffold_10:17290220-17291279(-) (11)	NA	NA	NA	AT5G05550.2	sequence-specific DNA binding transcription factors 	NA	NA	Medtr4g109750.1	"6b-interacting protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20927.1.S1_s_at	A	A1TS	POPTR_0010s00660	POPTR_0010s00660 (11)	scaffold_10:362680-363427(+) (11)	NA	NA	NA	AT1G48330.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g18450.1	expressed protein	Medtr2g052370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209270.1.S1_at	A	A1TS	POPTR_0010s19360	POPTR_0010s19360 (11)	scaffold_10:17301325-17301844(+) (11)	NA	Q8S9G6	Taxadien-5-alpha-ol O-acetyltransferase	AT2G40230.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g28474.1	"transferase family protein, putative, expressed"	Medtr3g094520.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.209271.1.S1_at	A	A1TS	POPTR_0010s19370	POPTR_0010s19370 (11)	scaffold_10:17312057-17312535(+) (11)	NA	A0MES8	Ethylene-responsive transcription factor ABI4	AT2G40220.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g28350.1	"AP2 domain containing protein, expressed"	Medtr5g090430.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.209272.1.S1_s_at	A	A1TS	POPTR_0010s19420	POPTR_0010s19420 (11)	scaffold_10:17328637-17328961(-) (11)	NA	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
PtpAffx.209273.1.S1_at	A	A1TS	POPTR_0010s19430	POPTR_0010s19430 (11)	scaffold_10:17343423-17343596(-) (11)	NA	Q9XEE8	Probable protein phosphatase 2C 30	AT2G40180.1	phosphatase 2C5 	LOC_Os03g18150.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209274.1.S1_s_at	A	A1TS	POPTR_0010s19440	POPTR_0010s19440 (11)	scaffold_10:17350533-17350924(+) (11)	NA	P42755	Em protein H5	AT2G40170.1	Stress induced protein 	LOC_Os05g28210.1	"small hydrophilic plant seed protein, putative, expressed"	AC233100_69.1	Small hydrophilic plant seed protein AC233100.6 300262-299531 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209275.1.S1_at	A	A1TS	POPTR_0010s19500	POPTR_0010s19500 (11)	scaffold_10:17388817-17389088(+) (11)	NA	Q9Y2K9	Syntaxin-binding protein 5-like	AT5G05570.2	transducin family protein / WD-40 repeat family protein 	LOC_Os07g49300.1	expressed protein	Medtr5g090270.1	Synaptobrevin; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209276.1.S1_at	A	A1TS	POPTR_0010s19510	POPTR_0010s19510 (10)	scaffold_10:17393846-17394753(+) (10)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.209276.1.S1_s_at	A	A1TS	POPTR_0010s19510	POPTR_0010s19510 (11)	scaffold_10:17394482-17394847(+) (11)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.209276.1.S1_x_at	A	A1TS	POPTR_0010s19510	POPTR_0010s19510 (10)	scaffold_10:17393846-17394810(+) (10)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.209277.1.S1_at	A	A1TS	POPTR_0010s19560	POPTR_0010s19560 (11)	scaffold_10:17437381-17439874(-) (11)	NA	O67588	Chaperone protein ClpB	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209278.1.S1_at	A	A1TS	POPTR_0010s19590	POPTR_0010s19590 (11)	scaffold_10:17478227-17478698(+) (11)	NA	Q9LY50	Putative serine/threonine-protein kinase-like protein CCR3	AT3G55950.1	CRINKLY4 related 3 	LOC_Os05g03620.1	"TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr3g093940.1	Protein kinase; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209279.1.S1_at	A	A1TS	POPTR_0010s19600	POPTR_0010s19600 (11)	scaffold_10:17481861-17484584(-) (11)	NA	Q9FFK8	NF-X1-type zinc finger protein NFXL2	AT5G05660.1	sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors 	LOC_Os01g06550.1	"NF-X1-type zinc finger protein, putative, expressed"	Medtr3g093930.1	"Zinc finger, NF-X1-type; Zinc finger, PHD-type; 2Fe-2S ferredoxin, iron-sulfur binding site "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.209280.1.S1_at	A	A1TS	POPTR_0010s19620	POPTR_0010s19620 (11)	scaffold_10:17498954-17499943(-) (11)	NA	Q8GV43	Phosphoinositide phospholipase C 6	AT2G40116.1	Phosphoinositide-specific phospholipase C family protein 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr5g090020.1	C2; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.209280.1.S1_x_at	A	A1TS	POPTR_0010s19620	POPTR_0010s19620 (11)	scaffold_10:17498917-17499943(-) (11)	NA	Q8GV43	Phosphoinositide phospholipase C 6	AT2G40116.1	Phosphoinositide-specific phospholipase C family protein 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr5g090020.1	C2; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.209281.1.S1_at	A	A1TS	POPTR_0010s19640	POPTR_0010s19640 (10)	scaffold_10:17512351-17512892(+) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os01g60140.1	"ATCHX15, putative, expressed"	Medtr4g142890.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.209282.1.S1_at	A	A1MS	POPTR_0010s19670	POPTR_0010s19670 (9)	scaffold_10:17523003-17524058(-) (9)	NA	O04212	Putative ABC1 protein At2g40090	AT2G40090.1	ABC2 homolog 9 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209283.1.S1_at	A	A1MS	POPTR_0010s19710	POPTR_0010s19710 (11)	scaffold_10:17548090-17548710(-) (11)	NA	Q42569	Cytochrome P450 90A1	AT5G05690.2	Cytochrome P450 superfamily protein 	LOC_Os12g04480.1	"cytochrome P450, putative, expressed"	Medtr5g089930.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209284.1.S1_at	A	A1MS	POPTR_0010s19740	POPTR_0010s19740 (9)	scaffold_10:17575016-17576637(-) (9)	NA	Q9ZT48	Arginyl-tRNA--protein transferase 1	AT5G05700.1	arginine-tRNA protein transferase 1 	LOC_Os05g37434.1	"arginyl-tRNA--protein transferase 1, putative, expressed"	Medtr3g093390.1	"Arginyl tRNA synthetase, N-terminal; Arginine-tRNA-protein transferase, N-terminal; Arginine-tRNA-protein transferase, C-terminal "	GO:0016598|protein arginylation	GO:0004057|arginyltransferase activity	NA
PtpAffx.209285.1.S1_at	A	A1TS	POPTR_0010s19790	POPTR_0010s19790 (11)	scaffold_10:17602677-17604841(-) (11)	NA	P32068	"Anthranilate synthase component I-1, chloroplastic"	AT5G05730.1	anthranilate synthase alpha subunit 1 	LOC_Os03g61120.1	"anthranilate synthase component I-1, chloroplast precursor, putative, expressed"	Medtr3g093360.1	Anthranilate synthase component I 	GO:0009058|biosynthetic process	GO:0016833|oxo-acid-lyase activity	NA
PtpAffx.209286.1.S1_at	A	A1TS	POPTR_0010s19810	POPTR_0010s19810 (11)	scaffold_10:17617813-17619189(-) (11)	NA	NA	NA	AT5G05740.1	ethylene-dependent gravitropism-deficient and yellow-green-like 2 	LOC_Os01g04900.2	"peptidase M50 family protein, putative, expressed"	Medtr5g089640.1	Peptidase M50 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209287.1.S1_at	A	A1TS	POPTR_0010s19830	POPTR_0010s19830 (11)	scaffold_10:17625418-17626440(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g093330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209288.1.S1_at	A	A1TS	POPTR_0010s19880	POPTR_0010s19880 (11)	scaffold_10:17661994-17663040(+) (11)	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.209289.1.S1_at	A	A1TS	POPTR_0010s19890	POPTR_0010s19890 (11)	scaffold_10:17665434-17666149(+) (11)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	LOC_Os12g40070.1	B3 DNA binding domain containing protein	Medtr4g092810.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.209290.1.S1_at	A	A1TS	POPTR_0010s19900	POPTR_0010s19900 (11)	scaffold_10:17668906-17669936(+) (11)	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209291.1.S1_s_at	A	A1TS	POPTR_0010s19910	POPTR_0010s19910 (11)	scaffold_10:17672074-17672454(-) (11)	NA	Q93063	Exostosin-2	AT3G55830.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g49150.1	"exostosin, putative, expressed"	Medtr5g089480.1	"EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.209292.1.S1_at	A	A1TS	POPTR_0010s19950	POPTR_0010s19950 (10)	scaffold_10:17708297-17708886(+) (10)	NA	Q8H1D2	WUSCHEL-related homeobox 5	AT3G11260.1	WUSCHEL related homeobox 5 	LOC_Os01g63510.1	"homeobox domain containing protein, expressed"	Medtr5g089330.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.209293.1.S1_s_at	A	A1TS	POPTR_0010s19970	POPTR_0010s19970 (11)	scaffold_10:17715574-17715886(-) (11)	NA	NA	NA	AT3G55820.1	Fasciclin-like arabinogalactan family protein 	LOC_Os03g13490.1	expressed protein	Medtr5g089310.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209294.1.S1_at	A	A1TS	POPTR_0010s19980	POPTR_0010s19980 (11)	scaffold_10:17717749-17718104(-) (11)	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT2G39980.1	HXXXD-type acyl-transferase family protein 	LOC_Os05g37660.1	"transferase family protein, putative, expressed"	Medtr5g089300.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.209295.1.S1_at	A	A1MS	POPTR_0010s19990	POPTR_0010s19990 (11)	scaffold_10:17738041-17738600(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	AC233676_23.1	hypothetical protein AC233676.2 90440-90979 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209296.1.S1_at	A	A1TS	POPTR_0010s20040	POPTR_0010s20040 (10)	scaffold_10:17800568-17800640(-) (10)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os05g37730.1	"MYB family transcription factor, putative, expressed"	Medtr5g089190.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209297.1.S1_at	A	A1TS	POPTR_0010s20090	POPTR_0010s20090 (11)	scaffold_10:17829627-17830113(-) (11)	NA	Q9C7U5	"Glucan endo-1,3-beta-glucosidase 2"	AT3G55780.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g64170.3	"glycosyl hydrolases family 17, putative, expressed"	Medtr5g088990.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.209298.1.S1_at	A	A1TS	POPTR_0010s20120	POPTR_0010s20120 (11)	scaffold_10:17838320-17838917(+) (11)	NA	NA	NA	AT2G39910.1	ARM repeat superfamily protein 	NA	NA	Medtr3g092970.1	"Serine/threonine dehydratase, pyridoxal-phosphate-binding site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2093.1.S1_at	A	A1TS	POPTR_0003s06030	POPTR_0003s06030 (11)	scaffold_3:7410244-7410762(-) (11)	NA	NA	NA	AT1G15410.1	aspartate-glutamate racemase family 	LOC_Os01g37470.1	"asp/Glu racemase, putative, expressed"	Medtr2g125860.1	Aspartate racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2093.2.S1_a_at	A	A1TS	POPTR_0003s06030	POPTR_0003s06030 (11)	scaffold_3:7413140-7413266(-) (11)	NA	NA	NA	AT1G15410.1	aspartate-glutamate racemase family 	LOC_Os01g37470.1	"asp/Glu racemase, putative, expressed"	Medtr2g125860.1	Aspartate racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209300.1.S1_at	A	A1TS	POPTR_0010s20130	POPTR_0010s20130 (11)	scaffold_10:17842127-17844631(-) (11)	NA	Q6ICL7	Solute carrier family 35 member E4	AT3G11320.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr3g092950.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.209301.1.S1_at	A	A1MS	POPTR_0010s20160	POPTR_0010s20160 (11)	scaffold_10:17861368-17861967(+) (11)	NA	NA	NA	AT2G37975.1	Yos1-like protein 	LOC_Os03g21390.1	expressed protein	Medtr4g015660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209302.1.S1_at	A	A1TS	POPTR_0010s20180	POPTR_0010s20180 (11)	scaffold_10:17863009-17863597(-) (11)	NA	Q9LRB5	Lysine histidine transporter 2	AT2G39890.2	proline transporter 1 	LOC_Os07g01090.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g092910.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209303.1.S1_at	A	A1TS	POPTR_0010s20200	POPTR_0010s20200 (11)	scaffold_10:17886574-17888540(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209304.1.S1_at	A	A1TS	POPTR_0010s20220	POPTR_0010s20220 (11)	scaffold_10:17898523-17901724(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT3G55730.1	myb domain protein 109 	LOC_Os01g63160.1	"MYB family transcription factor, putative, expressed"	Medtr3g148280.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209304.1.S1_x_at	A	A1TS	POPTR_0010s20220	POPTR_0010s20220 (11)	scaffold_10:17898411-17901847(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT3G55730.1	myb domain protein 109 	LOC_Os01g63160.1	"MYB family transcription factor, putative, expressed"	Medtr3g148280.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209305.1.S1_at	A	A1TS	POPTR_0010s20220	POPTR_0010s20220 (11)	scaffold_10:17901991-17902248(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT3G55730.1	myb domain protein 109 	LOC_Os01g63160.1	"MYB family transcription factor, putative, expressed"	Medtr3g148280.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209307.1.S1_s_at	A	A1TS	POPTR_0010s20300	POPTR_0010s20300 (11)	scaffold_10:17942071-17942642(+) (11)	NA	P27880	18.2 kDa class I heat shock protein	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067320.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209308.1.S1_at	A	A1TS	POPTR_0010s20320	POPTR_0010s20320 (11)	scaffold_10:17968194-17971738(-) (11)	NA	NA	NA	AT5G05930.1	guanylyl cyclase 1 	LOC_Os05g37950.1	"guanylyl cyclase, putative, expressed"	Medtr3g092620.1	"Uncharacterized protein C22orf13 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209309.1.S1_at	A	A1TS	POPTR_0010s20330	POPTR_0010s20330 (11)	scaffold_10:17980753-17981081(+) (11)	POPTR_0008s06230 (6)	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G05940.1	ROP guanine nucleotide exchange factor 5 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr3g092590.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.209310.1.S1_s_at	A	A2TS	POPTR_0010s20400	POPTR_0010s20420 (11)//POPTR_0010s20400 (11)	scaffold_10:18006693-18007401(-) (11)//scaffold_10:18016505-18017216(-) (11)	NA	Q39547	Cucumisin	AT5G59100.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os01g52750.1	"OsSub3 - Putative Subtilisin homologue, expressed"	AC233100_30.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide; Peptidase S8A, bacillopeptidase F AC233100.6 99564-105523 E EGN_Mt090430 200"	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.209311.1.S1_at	A	A1MS	POPTR_0010s20410	POPTR_0010s20410 (11)	scaffold_10:18011120-18011404(-) (11)	NA	Q39547	Cucumisin	AT5G59190.1	subtilase family protein 	LOC_Os04g48416.1	"OsSub45 - Putative Subtilisin homologue, expressed"	Medtr6g074160.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209311.1.S1_s_at	A	A2TS	POPTR_0010s20410	POPTR_0010s20410 (11)//POPTR_0010s20430 (11)	scaffold_10:18011430-18011834(-) (11)//scaffold_10:18024821-18025225(-) (11)	NA	Q39547	Cucumisin	AT5G59190.1	subtilase family protein 	LOC_Os04g48416.1	"OsSub45 - Putative Subtilisin homologue, expressed"	Medtr6g074160.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209313.1.S1_at	A	A1TS	POPTR_0010s20430	POPTR_0010s20430 (11)	scaffold_10:18021896-18022571(-) (11)	NA	Q39547	Cucumisin	AT5G59100.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os01g52750.1	"OsSub3 - Putative Subtilisin homologue, expressed"	AC233100_30.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide; Peptidase S8A, bacillopeptidase F AC233100.6 99564-105523 E EGN_Mt090430 200"	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.209314.1.S1_at	A	A1MS	POPTR_0010s20440	POPTR_0010s20440 (11)	scaffold_10:18030455-18030988(+) (11)	NA	NA	NA	AT2G21110.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g59440.1	"dirigent, putative, expressed"	Medtr3g138740.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209315.1.S1_at	A	A1TS	POPTR_0010s20460	POPTR_0010s20460 (11)	scaffold_10:18032276-18033595(+) (11)	NA	Q39434	Ras-related protein Rab2BV	AT1G07410.1	RAB GTPase homolog A2B 	LOC_Os03g60870.1	"ras-related protein, putative, expressed"	Medtr3g092520.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.209316.1.S1_at	A	A1TS	POPTR_0010s20480	POPTR_0010s20480 (10)	scaffold_10:18037794-18038500(+) (11)	NA	Q9LZM8	BEL1-like homeodomain protein 9	AT5G02030.1	POX (plant homeobox) family protein 	LOC_Os05g38120.1	"homeodomain protein, putative, expressed"	Medtr7g070800.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.209317.1.S1_at	A	A1TS	POPTR_0010s20480	POPTR_0010s20480 (11)	scaffold_10:18043343-18043613(+) (11)	NA	Q9LZM8	BEL1-like homeodomain protein 9	AT5G02030.1	POX (plant homeobox) family protein 	LOC_Os05g38120.1	"homeodomain protein, putative, expressed"	Medtr7g070800.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.209317.1.S1_s_at	A	A2TS	POPTR_0008s06130	POPTR_0008s06130 (11)//POPTR_0010s20480 (11)	scaffold_10:18042762-18043290(+) (11)//scaffold_8:3627094-3627645(-) (11)	NA	Q9LZM8	BEL1-like homeodomain protein 9	AT5G02030.1	POX (plant homeobox) family protein 	LOC_Os05g38120.1	"homeodomain protein, putative, expressed"	Medtr7g070800.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.209317.1.S1_x_at	A	A1TS	POPTR_0010s20480	POPTR_0010s20480 (11)	scaffold_10:18043313-18043612(+) (11)	NA	Q9LZM8	BEL1-like homeodomain protein 9	AT5G02030.1	POX (plant homeobox) family protein 	LOC_Os05g38120.1	"homeodomain protein, putative, expressed"	Medtr7g070800.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.209318.1.S1_at	A	A1TS	POPTR_0010s20500	POPTR_0010s20500 (11)	scaffold_10:18052333-18053664(-) (11)	NA	Q0WSN2	Protein DA1-related 2	AT2G39830.1	DA1-related protein 2 	LOC_Os03g16090.1	"LIM domain-containing protein, putative, expressed"	Medtr5g088450.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.209320.1.S1_at	A	A1TS	POPTR_0010s20540	POPTR_0010s20540 (9)	scaffold_10:18085632-18086199(-) (11)	NA	Q9SSE8	Probable glycosyltransferase At3g07620	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr5g088580.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.209321.1.S1_at	A	A1MS	POPTR_0010s20570	POPTR_0010s20570 (10)	scaffold_10:18096046-18096599(-) (10)	NA	NA	NA	AT2G37820.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g41930.1	"DC1 domain-containing protein, putative"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209322.1.S1_at	A	A1TS	POPTR_0010s20640	POPTR_0010s20640 (11)	scaffold_10:18136681-18137053(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209323.1.S1_at	A	A1TS	POPTR_0010s20740	POPTR_0010s20740 (11)	scaffold_10:18216079-18216591(-) (11)	NA	Q9LHS9	Probable transcriptional regulator RABBIT EARS	AT2G37740.1	zinc-finger protein 10 	LOC_Os05g20930.1	"ZOS5-07 - C2H2 zinc finger protein, expressed"	Medtr4g018860.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.209324.1.S1_at	A	A1TS	POPTR_0010s20780	POPTR_0010s20780 (11)	scaffold_10:18238151-18238559(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT3G55560.1	AT-hook protein of GA feedback 2 	LOC_Os03g16350.1	"DNA binding protein, putative, expressed"	Medtr5g098890.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209325.1.S1_at	A	A1TS	POPTR_0010s20790	POPTR_0010s20790 (11)	scaffold_10:18249669-18250199(+) (11)	POPTR_0008s05880 (8)	Q9M8D3	"Probable phosphoribosylformylglycinamidine synthase, chloroplastic"	AT1G74260.1	purine biosynthesis 4 	LOC_Os01g66500.1	"phosphoribosylformylglycinamidine synthase, putative, expressed"	Medtr3g104150.1	"AIR synthase related protein, C-terminal "	NA	GO:0003824|catalytic activity	NA
PtpAffx.209326.1.S1_at	A	A1TS	POPTR_0010s20800	POPTR_0010s20800 (11)	scaffold_10:18253382-18254066(-) (11)	NA	Q9LHS8	LOB domain-containing protein 33	AT5G06080.1	LOB domain-containing protein 33 	LOC_Os08g44940.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209327.1.S1_at	A	A1TS	POPTR_0010s20840	POPTR_0010s20840 (11)	scaffold_10:18284005-18284554(+) (11)	NA	Q53MB8	Thaumatin-like protein	AT5G02140.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os11g47944.1	"thaumatin, putative"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209328.1.S1_at	A	A1TS	POPTR_0010s20860	POPTR_0010s20860 (10)	scaffold_10:18287158-18291481(+) (11)	NA	D4N502	Codeine O-demethylase	AT3G21420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g70930.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr5g067780.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.209329.1.S1_at	A	A1TS	POPTR_0010s20890	POPTR_0010s20890 (9)	scaffold_10:18322390-18322645(+) (9)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT2G39720.1	RING-H2 finger C2A 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209330.1.S1_at	A	A1TS	POPTR_0010s20900	POPTR_0010s20900 (11)	scaffold_10:18331753-18332209(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT2G39710.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g62630.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g087300.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209331.1.S1_at	A	A1TS	POPTR_0010s21040	POPTR_0010s21040 (11)	scaffold_10:18473971-18475252(-) (11)	NA	NA	NA	AT2G39690.1	"Protein of unknown function, DUF547 "	LOC_Os01g05480.3	expressed protein	Medtr5g087330.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209332.1.S1_at	A	A1TS	POPTR_0010s21050	POPTR_0010s21050 (11)	scaffold_10:18478340-18480844(-) (11)	NA	Q0JHU5	Elicitor-responsive protein 1	AT3G55470.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g62430.3	"C2 domain containing protein, putative, expressed"	Medtr5g087300.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209333.1.S1_at	A	A1TS	POPTR_0010s21060	POPTR_0010s21060 (11)	scaffold_10:18484733-18486760(-) (11)	NA	Q0JHU5	Elicitor-responsive protein 1	AT3G55470.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g62430.3	"C2 domain containing protein, putative, expressed"	Medtr5g087300.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209334.1.S1_at	A	A1TS	POPTR_0010s21080	POPTR_0010s21080 (10)	scaffold_10:18498203-18499007(-) (11)	NA	B0C9F4	Ribosomal RNA large subunit methyltransferase N	AT2G39670.1	Radical SAM superfamily protein 	LOC_Os01g74190.1	"radical SAM enzyme, putative, expressed"	Medtr5g087280.1	Conserved hypothetical protein 48; Radical SAM 	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.209334.1.S1_s_at	A	A1TS	POPTR_0010s21080	POPTR_0010s21080 (10)	scaffold_10:18498056-18498931(-) (11)	NA	B0C9F4	Ribosomal RNA large subunit methyltransferase N	AT2G39670.1	Radical SAM superfamily protein 	LOC_Os01g74190.1	"radical SAM enzyme, putative, expressed"	Medtr5g087280.1	Conserved hypothetical protein 48; Radical SAM 	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.209335.1.S1_s_at	A	A1TS	POPTR_0010s21110	POPTR_0010s21110 (11)	scaffold_10:18522138-18522800(+) (11)	NA	Q9C7A8	DNA replication complex GINS protein PSF2	AT3G12530.1	PSF2 	LOC_Os01g14610.2	"PSF2 - Putative GINS complex subunit, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209336.1.S1_at	A	A1TS	POPTR_0010s21130	POPTR_0010s21130 (11)	scaffold_10:18540745-18542068(+) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT3G55430.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os07g13580.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.209338.1.S1_at	A	A1MS	POPTR_0010s21160	POPTR_0010s21160 (9)	scaffold_10:18556818-18557876(+) (11)	NA	NA	NA	AT3G46540.1	ENTH/VHS family protein 	LOC_Os01g62370.1	"ENTH domain containing protein, expressed"	Medtr1g090360.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209339.1.S1_s_at	A	A1TS	POPTR_0010s21320	POPTR_0010s21320 (11)	scaffold_10:18648914-18649017(-) (11)	NA	Q9LF64	RING-H2 finger protein ATL52	AT5G17600.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g026890.1	"Putative RING-H2 finger protein ATL1H precursor, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209340.1.S1_s_at	A	A1TS	POPTR_0010s21330	POPTR_0010s21330 (11)	scaffold_10:18650362-18650615(-) (11)	NA	NA	NA	AT5G17600.1	RING/U-box superfamily protein 	NA	NA	Medtr5g026890.1	"Putative RING-H2 finger protein ATL1H precursor, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209341.1.S1_at	A	A1TS	POPTR_0010s21390	POPTR_0010s21390 (11)	scaffold_10:18693608-18693943(+) (11)	NA	P34558	Uncharacterized protein T05G5.5	AT2G27490.2	dephospho-CoA kinase family 	LOC_Os01g25880.1	"dephospho-CoA kinase, putative, expressed"	Medtr2g017630.1	Dephospho-CoA kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209342.1.S1_at	A	A1MS	POPTR_0010s21440	POPTR_0010s21440 (9)	scaffold_10:18721439-18721527(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr3g005290.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209343.1.S1_at	A	A1TS	POPTR_0010s21450	POPTR_0010s21450 (9)	scaffold_10:18724584-18725137(+) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.2	"OsFBX331 - F-box domain containing protein, expressed"	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209344.1.S1_at	A	A1TS	POPTR_0010s21490	POPTR_0010s21490 (11)	scaffold_10:18742462-18742761(-) (11)	NA	NA	NA	AT1G65520.1	"delta(3), delta(2)-enoyl CoA isomerase 1 "	LOC_Os05g45300.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr7g025640.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.209344.1.S1_s_at	A	A1TS	POPTR_0010s21490	POPTR_0010s21490 (11)	scaffold_10:18742619-18743016(-) (11)	NA	NA	NA	AT1G65520.1	"delta(3), delta(2)-enoyl CoA isomerase 1 "	LOC_Os05g45300.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr7g025640.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.209345.1.S1_at	A	A1TS	POPTR_0010s21500	POPTR_0010s21500 (11)	scaffold_10:18755868-18756920(+) (11)	NA	NA	NA	AT3G12590.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g74310.1	expressed protein	Medtr7g025550.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209346.1.S1_at	A	A1MS	POPTR_0010s21530	POPTR_0010s21530 (10)	scaffold_10:18772636-18773063(+) (10)	NA	NA	NA	AT2G39580.1	CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os12g37890.1	expressed protein	Medtr7g025350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209349.1.S1_at	A	A1TS	POPTR_0010s21620	POPTR_0010s21620 (10)	scaffold_10:18826806-18827891(+) (11)	NA	Q54JE4	"2-oxoglutarate dehydrogenase, mitochondrial"	AT3G55410.1	"2-oxoglutarate dehydrogenase, E1 component "	LOC_Os07g49520.1	"2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed"	Medtr7g025160.1	"2-oxoglutarate dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.209350.1.S1_at	A	A1TS	POPTR_0010s21690	POPTR_0010s21690 (11)	scaffold_10:18875705-18876187(+) (11)	NA	P83326	Pectinesterase inhibitor	AT5G64620.1	cell wall / vacuolar inhibitor of fructosidase 2 	LOC_Os04g49730.1	"invertase/pectin methylesterase inhibitor family protein, putative"	Medtr3g143630.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.209352.1.S1_at	A	A1TS	POPTR_0010s21720	POPTR_0010s21720 (11)	scaffold_10:18886801-18887019(-) (11)	NA	Q9M3B9	ABC transporter B family member 20	AT3G55320.1	P-glycoprotein  20 	LOC_Os01g74470.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.209352.1.S1_s_at	A	A1TS	POPTR_0010s21720	POPTR_0010s21720 (11)	scaffold_10:18886711-18886812(-) (11)	NA	Q9M3B9	ABC transporter B family member 20	AT3G55320.1	P-glycoprotein  20 	LOC_Os01g74470.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.209352.1.S1_x_at	A	A1TS	POPTR_0010s21720	POPTR_0010s21720 (11)	scaffold_10:18886715-18887233(-) (11)	NA	Q9M3B9	ABC transporter B family member 20	AT3G55320.1	P-glycoprotein  20 	LOC_Os01g74470.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.209355.1.S1_at	A	A1TS	POPTR_0010s21780	POPTR_0010s21780 (11)	scaffold_10:18918915-18919317(-) (11)	NA	P28563	Dual specificity protein phosphatase 1	AT3G55270.1	mitogen-activated protein kinase phosphatase 1 	LOC_Os05g02500.1	"dual specificity protein phosphatase, putative, expressed"	Medtr3g102500.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.209355.1.S1_x_at	A	A1TS	POPTR_0010s21780	POPTR_0010s21780 (11)	scaffold_10:18918762-18919317(-) (11)	NA	P28563	Dual specificity protein phosphatase 1	AT3G55270.1	mitogen-activated protein kinase phosphatase 1 	LOC_Os05g02500.1	"dual specificity protein phosphatase, putative, expressed"	Medtr3g102500.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.209357.1.S1_at	A	A1TS	POPTR_0010s21870	POPTR_0010s21870 (11)	scaffold_10:18998987-18999467(-) (11)	NA	NA	NA	AT2G39430.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g17220.1	"dirigent, putative, expressed"	Medtr7g021120.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209358.1.S1_at	A	A1TS	POPTR_0010s21880	POPTR_0010s21880 (11)	scaffold_10:19001546-19002032(-) (11)	NA	NA	NA	AT1G07730.2	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g17220.1	"dirigent, putative, expressed"	Medtr7g021120.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209359.1.S1_at	A	A1TS	POPTR_0010s21890	POPTR_0010s21890 (11)	scaffold_10:19008827-19009097(+) (11)	NA	Q921M3	Splicing factor 3B subunit 3	AT3G55200.1	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 	LOC_Os02g04480.1	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr8g121570.1	"CPSF A subunit, C-terminal; WD40-like "	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.209359.1.S1_s_at	A	A1TS	POPTR_0010s21890	POPTR_0010s21890 (11)	scaffold_10:19008470-19008685(+) (11)	NA	Q921M3	Splicing factor 3B subunit 3	AT3G55200.1	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 	LOC_Os02g04480.1	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr8g121570.1	"CPSF A subunit, C-terminal; WD40-like "	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.209361.1.S1_s_at	A	A1TS	POPTR_0010s21920	POPTR_0010s21920 (11)	scaffold_10:19028494-19029079(+) (11)	NA	Q9UPT5	Exocyst complex component 7	AT2G39380.1	exocyst subunit exo70 family protein H2 	LOC_Os01g69230.1	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr2g114210.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.209362.1.S1_s_at	A	A2TS	POPTR_0010s21930	POPTR_0010s21930 (11)//POPTR_0010s21940 (11)	scaffold_10:19034192-19034238(+) (11)//scaffold_10:19048682-19048728(+) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.209363.1.S1_at	A	A1TS	POPTR_0010s21960	POPTR_0010s21960 (11)	scaffold_10:19068319-19068890(-) (11)	NA	NA	NA	AT2G39370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os01g61980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209365.1.S1_at	A	A1TS	POPTR_0010s22020	POPTR_0010s22020 (11)	scaffold_10:19105739-19106155(+) (11)	NA	Q5ZJ85	U4/U6 small nuclear ribonucleoprotein Prp3	AT1G28060.1	Pre-mRNA-splicing factor 3 	LOC_Os09g07500.1	expressed protein	Medtr1g146240.1	"small nuclear ribonucleoprotein family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209365.1.S1_s_at	A	A3TS	POPTR_0008s04790	POPTR_0010s22020 (11)//POPTR_0008s04790 (11)//POPTR_1385s00200 (11)	scaffold_10:19105763-19105970(+) (11)//scaffold_1385:4866-5073(-) (11)//scaffold_8:2771558-2771765(-) (11)	NA	Q5ZJ85	U4/U6 small nuclear ribonucleoprotein Prp3	AT1G28060.1	Pre-mRNA-splicing factor 3 	LOC_Os09g07500.1	expressed protein	Medtr1g146240.1	"small nuclear ribonucleoprotein family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209366.1.S1_at	A	A1TS	POPTR_0010s22030	POPTR_0010s22030 (11)	scaffold_10:19113568-19114149(+) (11)	NA	Q9M2V7	ABC transporter G family member 16	AT3G55090.1	ABC-2 type transporter family protein 	LOC_Os03g17350.1	"white-brown complex homolog protein, putative, expressed"	Medtr1g146110.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.209367.1.S1_at	A	A1TS	POPTR_0010s22050	POPTR_0010s22050 (11)	scaffold_10:19121782-19123508(-) (11)	NA	Q96PV6	Leukocyte receptor cluster member 8	AT2G39340.1	SAC3/GANP/Nin1/mts3/eIF-3 p25 family 	LOC_Os05g38730.1	"SAC3/GANP family protein, putative, expressed"	Medtr3g098200.1	SAC3/GANP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209368.1.S1_at	A	A1TS	POPTR_0010s22070	POPTR_0010s22070 (11)	scaffold_10:19136154-19136627(-) (11)	NA	NA	NA	AT5G13590.1	unknown protein; Has 150 Blast hits to 121 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). 	NA	NA	Medtr1g146260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20937.1.A1_at	A	A1TS	POPTR_0001s21750	POPTR_0001s21750 (11)	scaffold_1:20264135-20265269(+) (11)	NA	Q8VYI9	Non-specific lipid-transfer protein-like protein At5g64080	AT5G64080.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g09230.1	"LTPL69 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g078840.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209370.1.S1_at	A	A1TS	POPTR_0010s22140	POPTR_0010s22140 (11)	scaffold_10:19161903-19163478(+) (11)	NA	NA	NA	AT3G55060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink). 	LOC_Os07g48700.1	expressed protein	Medtr1g146390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209371.1.S1_at	A	A1TS	POPTR_0010s22160	POPTR_0010s22160 (11)	scaffold_10:19166911-19167417(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g26800.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209372.1.S1_at	A	A1MS	POPTR_0010s22190	POPTR_0010s22190 (10)	scaffold_10:19182472-19183178(+) (11)	NA	Q8H8U5	Protein IN2-1 homolog B	AT5G02780.1	glutathione transferase lambda 1 	LOC_Os03g17470.1	"IN2-1 protein, putative, expressed"	Medtr1g146570.1	"Glutathione S-transferase, C-terminal-like; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209373.1.S1_at	A	A1TS	POPTR_0010s22300	POPTR_0010s22300 (11)	scaffold_10:19249882-19251320(-) (11)	NA	P36151	Uncharacterized protein YKR070W	AT3G45740.1	hydrolase family protein / HAD-superfamily protein 	LOC_Os03g17590.1	"cat eye syndrome critical region protein 5 precursor, putative, expressed"	Medtr2g113800.1	"HAD-superfamily hydrolase, subfamily IIA "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209374.1.S1_at	A	A1TS	POPTR_0010s22310	POPTR_0010s22310 (11)	scaffold_10:19280911-19281426(+) (11)	NA	Q9HAU5	Regulator of nonsense transcripts 2	AT2G39260.1	binding;RNA binding 	LOC_Os02g42040.1	"MIF4G domain containing protein, putative, expressed"	Medtr2g055900.1	"Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.209374.1.S1_s_at	A	A1TS	POPTR_0010s22310	POPTR_0010s22310 (11)	scaffold_10:19281601-19281815(+) (11)	NA	Q9HAU5	Regulator of nonsense transcripts 2	AT2G39260.1	binding;RNA binding 	LOC_Os02g42040.1	"MIF4G domain containing protein, putative, expressed"	Medtr2g055900.1	"Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.209375.1.S1_at	A	A1TS	POPTR_0010s22320	POPTR_0010s22320 (11)	scaffold_10:19300628-19301068(+) (11)	NA	Q9SK03	Ethylene-responsive transcription factor RAP2-7	AT2G28550.1	related to AP2.7 	LOC_Os03g60430.2	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.209375.1.S1_x_at	A	A1TS	POPTR_0010s22320	POPTR_0010s22320 (11)	scaffold_10:19300628-19301587(+) (11)	NA	Q9SK03	Ethylene-responsive transcription factor RAP2-7	AT2G28550.1	related to AP2.7 	LOC_Os03g60430.2	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.209376.1.S1_at	A	A1TS	POPTR_0010s22340	POPTR_0010s22340 (11)	scaffold_10:19309883-19310487(-) (11)	NA	NA	NA	AT1G64870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45200.1); Has 99 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g41160.1	expressed protein	Medtr7g135640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209377.1.S1_at	A	A1TS	POPTR_0010s22350	POPTR_0010s22350 (11)	scaffold_10:19312409-19314171(+) (11)	NA	NA	NA	AT3G54970.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os02g15360.1	expressed protein	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.209378.1.S1_at	A	A1TS	POPTR_0010s22370	POPTR_0010s22370 (11)	scaffold_10:19321301-19321483(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209379.1.S1_at	A	A1TS	POPTR_0010s22390	POPTR_0010s22390 (11)	scaffold_10:19341356-19341888(+) (11)	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT3G54760.2	dentin sialophosphoprotein-related 	LOC_Os05g38810.1	"PWWP domain containing protein, expressed"	Medtr1g086970.1	PWWP; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209380.1.S1_at	A	A1TS	POPTR_0010s22400	POPTR_0010s22400 (11)	scaffold_10:19347176-19347876(+) (11)	NA	NA	NA	AT2G38890.1	unknown protein; Has 58 Blast hits to 54 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os05g03060.1	expressed protein	Medtr7g120900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209381.1.S1_at	A	A1TS	POPTR_0010s22460	POPTR_0010s22460 (11)	scaffold_10:19367614-19368196(+) (11)	NA	Q9ZVX5	Pentatricopeptide repeat-containing protein At2g16880	AT2G16880.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g10420.1	"PPR repeat containing protein, expressed"	Medtr1g121960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209382.1.S1_at	A	A1TS	POPTR_0010s22500	POPTR_0010s22500 (10)	scaffold_10:19402694-19402954(+) (11)	NA	Q8RWV3	Cyclin-L1-1	AT2G26430.1	arginine-rich cyclin 1 	LOC_Os01g27940.2	"cyclin-L1-1, putative, expressed"	Medtr5g068200.1	"Immunoglobulin/major histocompatibility complex; Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209383.1.S1_at	A	A1TS	POPTR_0010s22510	POPTR_0010s22510 (11)	scaffold_10:19410678-19410906(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209384.1.S1_at	A	A1TS	POPTR_0010s22530	POPTR_0010s22530 (11)	scaffold_10:19417995-19418521(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g128920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209385.1.S1_at	A	A1TS	POPTR_0010s22540	POPTR_0010s22540 (9)	scaffold_10:19422110-19422604(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209386.1.S1_at	A	A1TS	POPTR_0010s22550	POPTR_0010s22550 (11)	scaffold_10:19425381-19425901(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209387.1.S1_at	A	A1TS	POPTR_0010s22590	POPTR_0010s22590 (11)	scaffold_10:19445829-19446309(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209388.1.S1_at	A	A1TS	POPTR_0010s22600	POPTR_0010s22600 (11)	scaffold_10:19448939-19449798(+) (11)	NA	Q9FT54	Transcription factor GTE6	AT2G34900.1	Transcription factor GTE6 	LOC_Os06g04640.1	"bromodomain domain containing protein, expressed"	Medtr8g084150.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209389.1.S1_at	A	A1TS	POPTR_0010s22630	POPTR_0010s22630 (11)	scaffold_10:19464107-19464571(-) (11)	NA	Q680Q4	E3 SUMO-protein ligase SIZ1	AT5G60410.1	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr4g080810.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.209390.1.S1_at	A	A1TS	POPTR_0010s22650	POPTR_0010s22650 (11)	scaffold_10:19477532-19481744(+) (11)	NA	Q2T9L9	General transcription factor IIF subunit 2	AT3G52270.1	"Transcription initiation factor IIF, beta subunit "	LOC_Os05g43450.1	"transcription initiation factor IIF beta subunit, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006367|transcription initiation from RNA polymerase II promoter	GO:0005524|ATP binding||GO:0003702|RNA polymerase II transcription factor activity	GO:0005674|transcription factor TFIIF complex
PtpAffx.209391.1.S1_at	A	A1TS	POPTR_0010s22670	POPTR_0010s22670 (11)	scaffold_10:19490039-19490109(-) (11)	NA	O75376	Nuclear receptor corepressor 1	AT3G52250.1	Duplicated homeodomain-like superfamily protein 	LOC_Os05g03550.1	"MYB family transcription factor, putative, expressed"	Medtr1g121520.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209391.1.S1_s_at	A	A1TS	POPTR_0010s22670	POPTR_0010s22670 (11)	scaffold_10:19489837-19490380(-) (11)	NA	O75376	Nuclear receptor corepressor 1	AT3G52250.1	Duplicated homeodomain-like superfamily protein 	LOC_Os05g03550.1	"MYB family transcription factor, putative, expressed"	Medtr1g121520.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209392.1.S1_at	A	A1TS	POPTR_0010s22700	POPTR_0010s22700 (11)	scaffold_10:19519265-19520185(+) (11)	NA	Q8S8K6	Serine carboxypeptidase-like 28	AT2G35770.1	serine carboxypeptidase-like 28 	LOC_Os01g61690.1	"OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.209393.1.S1_at	A	A1MS	POPTR_0010s22720	POPTR_0010s22720 (11)	scaffold_10:19523979-19524140(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209395.1.S1_at	A	A1TS	POPTR_0010s22760	POPTR_0010s22760 (11)	scaffold_10:19547845-19548382(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209396.1.S1_at	A	A1TS	POPTR_0010s22780	POPTR_0010s22780 (11)	scaffold_10:19562596-19564045(-) (11)	NA	Q55680	Uncharacterized protein sll0005	AT2G39190.2	Protein kinase superfamily protein 	LOC_Os02g56200.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr1g121400.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209397.1.S1_at	A	A1TS	POPTR_0010s22800	POPTR_0010s22800 (11)	scaffold_10:19576588-19577051(+) (11)	NA	O80963	Serine/threonine-protein kinase-like protein CCR2	AT2G39180.1	CRINKLY4 related 2 	LOC_Os03g43670.1	"TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr2g118340.1	Protein kinase; TNFR/CD27/30/40/95 cysteine-rich region; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209398.1.S1_at	A	A1TS	POPTR_0010s22830	POPTR_0010s22830 (11)	scaffold_10:19604738-19605586(+) (11)	NA	P32483	Para-aminobenzoate synthase	AT2G28880.1	para-aminobenzoate (PABA) synthase family protein 	LOC_Os06g48620.1	"4-amino-4-deoxychorismate synthase, putative, expressed"	Medtr1g121290.1	Anthranilate synthase component I and chorismate binding protein 	GO:0009058|biosynthetic process	GO:0016833|oxo-acid-lyase activity	NA
PtpAffx.20940.1.S1_at	A	A1TS	POPTR_0002s01320	POPTR_0002s01320 (11)	scaffold_2:700655-701274(-) (11)	NA	O82150	"ATP-dependent zinc metalloprotease FTSH, chloroplastic"	AT5G42270.1	FtsH extracellular protease family 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.209400.1.S1_at	A	A1TS	POPTR_0010s22870	POPTR_0010s22870 (11)	scaffold_10:19626713-19627640(+) (11)	NA	P0AAD5	Tyrosine-specific transport protein	AT5G19500.1	Tryptophan/tyrosine permease 	LOC_Os07g46780.1	"tyrosine-specific transport protein, putative, expressed"	Medtr5g095820.1	Aromatic amino acid permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209401.1.S1_at	A	A1TS	POPTR_0010s22890	POPTR_0010s22890 (11)	scaffold_10:19633244-19634638(-) (11)	NA	Q8VX13	Protein disulfide isomerase-like 1-3	AT3G54960.1	PDI-like 1-3 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.209402.1.S1_at	A	A1TS	POPTR_0010s22900	POPTR_0010s22900 (10)	scaffold_10:19636637-19637600(-) (10)	NA	Q5BQN5	WPP domain-associated protein (Fragment)	AT5G14990.1	BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G34730.1); Has 8284 Blast hits to 6001 proteins in 578 species: Archae - 107; Bacteria - 678; Metazoa - 3983; Fungi - 607; Plants - 315; Viruses - 16; Other Eukaryotes - 2578 (source: NCBI BLink). 	LOC_Os12g41810.1	expressed protein	Medtr6g070170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209403.1.S1_at	A	A1TS	POPTR_0010s22930	POPTR_0010s22930 (11)	scaffold_10:19648240-19648753(+) (11)	NA	NA	NA	AT1G13810.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os08g13890.1	"exonuclease, putative, expressed"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209404.1.S1_at	A	A1TS	POPTR_0010s23000	POPTR_0010s23000 (11)	scaffold_10:19691430-19692050(-) (11)	NA	Q653H7	Auxin response factor 18	AT4G30080.1	auxin response factor 16 	LOC_Os06g47150.3	"auxin response factor 18, putative, expressed"	Medtr2g110140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.209405.1.S1_at	A	A1TS	POPTR_0010s23020	POPTR_0010s23020 (11)	scaffold_10:19720303-19721571(-) (11)	NA	NA	NA	AT3G54800.2	Pleckstrin homology (PH) and lipid-binding START domains-containing protein 	LOC_Os10g33930.1	"DUF1336 domain containing protein, expressed"	Medtr1g120740.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209406.1.S1_at	A	A1TS	POPTR_0010s23040	POPTR_0010s23040 (11)	scaffold_10:19738830-19739639(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT5G03250.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr1g120700.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.209408.1.S1_at	A	A1TS	POPTR_0010s23080	POPTR_0010s23080 (11)	scaffold_10:19757766-19758198(-) (11)	NA	Q3TZZ7	Extended synaptotagmin-2	AT5G04220.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os06g47130.1	"C2 domain containing protein, expressed"	Medtr1g120640.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209409.1.S1_at	A	A1TS	POPTR_0010s23090	POPTR_0010s23090 (11)	scaffold_10:19768960-19769224(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209410.1.S1_s_at	A	A1TS	POPTR_0010s23090	POPTR_0010s23090 (11)	scaffold_10:19768929-19769108(-) (11)//scaffold_10:19777846-19778021(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209411.1.S1_at	A	A1TS	POPTR_0010s23140	POPTR_0010s23140 (11)	scaffold_10:19798235-19798303(-) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT2G37030.1	SAUR-like auxin-responsive protein family  	LOC_Os04g43740.1	"OsSAUR18 - Auxin-responsive SAUR gene family member, expressed"	Medtr1g076620.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209411.1.S1_x_at	A	A1TS	POPTR_0010s23140	POPTR_0010s23140 (11)	scaffold_10:19798235-19798359(-) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT2G37030.1	SAUR-like auxin-responsive protein family  	LOC_Os04g43740.1	"OsSAUR18 - Auxin-responsive SAUR gene family member, expressed"	Medtr1g076620.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209412.1.S1_at	A	A1TS	POPTR_0010s23150	POPTR_0010s23150 (11)	scaffold_10:19803420-19803973(+) (11)	NA	Q43848	"Transketolase, chloroplastic"	AT3G60750.1	Transketolase 	LOC_Os06g04270.1	"transketolase, chloroplast precursor, putative, expressed"	Medtr2g132820.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.209413.1.S1_at	A	A1TS	POPTR_0010s23160	POPTR_0010s23160 (11)	scaffold_10:19814333-19814842(+) (11)	NA	Q9VMJ7	Lysine-specific demethylase lid	AT5G04240.1	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein 	LOC_Os01g67970.1	"ZOS1-20 - C2H2 zinc finger protein, expressed"	Medtr1g120550.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; Zinc finger, C2H2-type; ; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.209415.1.S1_at	A	A1TS	POPTR_0010s23180	POPTR_0010s23180 (11)	scaffold_10:19822534-19823046(+) (11)	NA	C0LGV0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	AT3G57120.1	Protein kinase superfamily protein 	LOC_Os02g57440.1	"LYK8, putative, expressed"	Medtr1g120540.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209415.1.S1_x_at	A	A1TS	POPTR_0010s23180	POPTR_0010s23180 (11)	scaffold_10:19822523-19823122(+) (11)	NA	C0LGV0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	AT3G57120.1	Protein kinase superfamily protein 	LOC_Os02g57440.1	"LYK8, putative, expressed"	Medtr1g120540.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209416.1.S1_at	A	A1MS	POPTR_0010s23190	POPTR_0010s23190 (9)	scaffold_10:19828356-19828887(+) (9)	NA	Q6EU49	Probable serine/threonine-protein kinase WNK4	AT5G41990.1	with no lysine (K) kinase 8 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr3g109240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209417.1.S1_at	A	A1TS	POPTR_0010s23220	POPTR_0010s23220 (11)	scaffold_10:19847785-19848839(+) (11)	NA	Q9LTC0	Probable receptor-like protein kinase At5g47070	AT3G09830.2	Protein kinase superfamily protein 	LOC_Os02g57420.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr1g076510.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209418.1.S1_at	A	A1MS	POPTR_0010s23240	POPTR_0010s23240 (11)	scaffold_10:19856118-19856607(+) (11)	NA	NA	NA	AT2G39120.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os03g57270.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr4g137920.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209419.1.S1_at	A	A1TS	POPTR_0010s23250	POPTR_0010s23250 (11)	scaffold_10:19857583-19859160(-) (11)	NA	Q9SS47	Pumilio homolog 4	AT3G10360.1	pumilio 4 	LOC_Os02g57390.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr1g120450.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.209420.1.S1_at	A	A1TS	POPTR_0010s23260	POPTR_0010s23260 (11)	scaffold_10:19867582-19869447(-) (11)	NA	Q8VZT6	"Thioredoxin-like 3-2, chloroplastic"	AT5G04260.1	WCRKC thioredoxin 2 	LOC_Os02g57380.1	"thioredoxin, putative, expressed"	Medtr7g112190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.209420.1.S1_x_at	A	A1TS	POPTR_0010s23260	POPTR_0010s23260 (11)	scaffold_10:19867582-19869514(-) (11)	NA	Q8VZT6	"Thioredoxin-like 3-2, chloroplastic"	AT5G04260.1	WCRKC thioredoxin 2 	LOC_Os02g57380.1	"thioredoxin, putative, expressed"	Medtr7g112190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.209421.1.S1_at	A	A1TS	POPTR_0010s23320	POPTR_0010s23320 (11)	scaffold_10:19935216-19935579(+) (11)	NA	NA	NA	AT2G28085.1	SAUR-like auxin-responsive protein family  	LOC_Os09g26610.1	"OsSAUR38 - Auxin-responsive SAUR gene family member, expressed"	AC235487_13.1	Auxin responsive SAUR protein AC235487.1 70356-69961 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209422.1.S1_at	A	A1TS	POPTR_0010s23340	POPTR_0010s23340 (9)	scaffold_10:19948725-19950294(-) (9)	NA	Q94KJ7	Vacuolar protein sorting-associated protein 33 homolog	AT3G54860.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os04g14654.2	"Sec1 family transport protein, putative, expressed"	NA	NA	GO:0006904|vesicle docking during exocytosis	NA	NA
PtpAffx.209423.1.S1_s_at	A	A1TS	POPTR_0010s23350	POPTR_0010s23350 (11)	scaffold_10:19966199-19966639(+) (11)	NA	Q9SS48	"Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial"	AT3G10370.1	FAD-dependent oxidoreductase family protein 	LOC_Os04g14790.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr1g068510.1	FAD-dependent glycerol-3-phosphate dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.209425.1.S1_at	A	A1TS	POPTR_0010s23370	POPTR_0010s23370 (11)	scaffold_10:19981216-19981893(+) (11)	NA	Q9SV36	Armadillo repeat-containing kinesin-like protein 1	AT3G54870.1	Armadillo/beta-catenin repeat family protein / kinesin motor family protein 	LOC_Os03g05820.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.209426.1.S1_at	A	A1TS	POPTR_0010s23390	POPTR_0010s23390 (11)	scaffold_10:20003576-20004107(+) (11)	NA	Q9CAE3	Lysine-specific histone demethylase 1 homolog 3	AT3G10390.1	Flavin containing amine oxidoreductase family protein 	LOC_Os04g47270.1	"amine oxidase, putative, expressed"	Medtr3g076130.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.209427.1.S1_at	A	A1TS	POPTR_0010s23420	POPTR_0010s23420 (11)	scaffold_10:20017507-20017767(+) (11)	NA	Q499V6	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	AT3G10400.1	RNA recognition motif and CCHC-type zinc finger domains containing protein 	LOC_Os09g37720.1	"RNA recognition motif containing protein, expressed"	Medtr5g079820.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.209428.1.S1_at	A	A1TS	POPTR_0010s23430	POPTR_0010s23430 (11)	scaffold_10:20021363-20021780(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209429.1.S1_at	A	A1TS	POPTR_0010s23450	POPTR_0010s23450 (11)	scaffold_10:20029414-20030528(-) (11)	NA	NA	NA	AT3G54880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 137 Blast hits to 137 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os07g29640.3	expressed protein	Medtr4g005450.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209429.1.S1_s_at	A	A1TS	POPTR_0010s23450	POPTR_0010s23450 (11)	scaffold_10:20031203-20031322(-) (11)	NA	NA	NA	AT3G54880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 137 Blast hits to 137 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os07g29640.3	expressed protein	Medtr4g005450.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209430.1.S1_at	A	A1TS	POPTR_0010s23460	POPTR_0010s23460 (11)	scaffold_10:20035263-20035534(-) (11)	NA	NA	NA	AT1G67410.1	Exostosin family protein 	LOC_Os01g69220.1	"exostosin family domain containing protein, expressed"	Medtr3g103670.1	Exostosin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209431.1.S1_at	A	A1TS	POPTR_0010s23510	POPTR_0010s23510 (11)	scaffold_10:20061070-20061917(-) (11)	NA	P25804	Cysteine proteinase 15A	AT3G54940.2	Papain family cysteine protease 	LOC_Os07g29760.1	"cysteine proteinase A494 precursor, putative, expressed"	Medtr1g028550.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.209432.1.S1_at	A	A1TS	POPTR_0010s23540	POPTR_0010s23540 (11)	scaffold_10:20084624-20085087(+) (11)	NA	P51281	Uncharacterized protein ycf45	AT3G10420.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g08970.1	"uncharacterized protein ycf45, putative, expressed"	AC233660_32.1	"AAA ATPase, central region AC233660.2 122587-125547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209433.1.S1_at	A	A1TS	POPTR_0010s23560	POPTR_0010s23560 (9)	scaffold_10:20103523-20104004(+) (11)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT5G04290.1	kow domain-containing transcription factor 1 	LOC_Os05g43060.1	"retrotransposon, putative, centromere-specific, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209434.1.S1_at	A	A1TS	POPTR_0010s23580	POPTR_0010s23580 (11)	scaffold_10:20121625-20122491(+) (11)	NA	Q4QSC8	Shugoshin-1	AT5G04320.2	Shugoshin C terminus 	LOC_Os02g55570.1	"shugoshin-1, putative, expressed"	Medtr4g076490.1	hypothetical protein 	GO:0045132|meiotic chromosome segregation	NA	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.209435.1.S1_at	A	A1TS	POPTR_0010s23600	POPTR_0010s23600 (9)	scaffold_10:20139674-20141679(+) (9)	NA	Q8GTR4	"Pullulanase 1, chloroplastic"	AT5G04360.1	limit dextrinase 	LOC_Os04g08270.1	"pullulanase precursor, putative, expressed"	Medtr3g150300.1	"Alpha amylase, catalytic region; Pullulanase, type I; ; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.209436.1.S1_at	A	A1TS	POPTR_0010s23610	POPTR_0010s23610 (11)	scaffold_10:20148660-20149182(+) (11)	NA	Q42430	Zinc finger protein 1	AT5G04390.1	C2H2-type zinc finger family protein 	LOC_Os02g57790.1	ZOS2-19 - C2H2 zinc finger protein	Medtr4g076150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.209438.1.S1_at	A	A1TS	POPTR_0010s23670	POPTR_0010s23670 (11)	scaffold_10:20181224-20181992(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117180.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.209439.1.S1_at	A	A1TS	POPTR_0010s23680	POPTR_0010s23680 (11)	scaffold_10:20185120-20185811(+) (11)	NA	Q84P21	4-coumarate--CoA ligase-like 5	AT1G20510.1	OPC-8:0 CoA ligase1 	LOC_Os03g04000.1	"AMP-binding domain containing protein, expressed"	AC235664_5.1	AMP-dependent synthetase and ligase; Calcium-binding EF-hand AC235664.1 17504-20540 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.209440.1.S1_at	A	A1TS	POPTR_0010s23780	POPTR_0010s23780 (11)	scaffold_10:20261365-20262274(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g01710.1	expressed protein	Medtr1g074280.1	Prefoldin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209441.1.S1_at	A	A1TS	POPTR_0010s23810	POPTR_0010s23810 (11)	scaffold_10:20290197-20290459(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209442.1.S1_at	A	A1TA	POPTR_0010s23820	POPTR_0010s23820 (11)	scaffold_10:20293070-20293226(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209443.1.S1_at	A	A1MS	POPTR_0010s23830	POPTR_0010s23830 (11)	scaffold_10:20305610-20306532(-) (11)	NA	NA	NA	AT5G04480.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os10g39900.1	"glycosyltransferase family protein 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209444.1.S1_at	A	A1TS	POPTR_0010s23880	POPTR_0010s23880 (11)	scaffold_10:20333432-20333728(+) (11)	NA	Q9P4X3	Probable U3 small nucleolar RNA-associated protein 7	AT3G10530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g08770.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209445.1.S1_at	A	A1TS	POPTR_0010s23900	POPTR_0010s23900 (10)	scaffold_10:20354532-20355169(+) (10)	NA	Q9Y169	Exostosin-2	AT5G04500.1	glycosyltransferase family protein 47 	LOC_Os05g46260.1	"exostosin, putative, expressed"	Medtr5g089480.1	"EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.209446.1.S1_at	A	A1TS	POPTR_0010s23930	POPTR_0010s23930 (11)	scaffold_10:20373830-20373965(+) (11)	NA	Q5HZ60	mRNA cap guanine-N7 methyltransferase 2	AT3G52210.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g54000.1	"mRNA cap guanine-N7 methyltransferase 2, putative, expressed"	Medtr3g124320.1	Methyltransferase type 12 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.209446.1.S1_s_at	A	A1TS	POPTR_0010s23930	POPTR_0010s23930 (11)	scaffold_10:20371385-20373819(+) (11)	NA	Q5HZ60	mRNA cap guanine-N7 methyltransferase 2	AT3G52210.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g54000.1	"mRNA cap guanine-N7 methyltransferase 2, putative, expressed"	Medtr3g124320.1	Methyltransferase type 12 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.209447.1.S1_at	A	A1TS	POPTR_0010s23950	POPTR_0010s23950 (11)	scaffold_10:20382305-20382666(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209448.1.S1_at	A	A1TS	POPTR_0010s23970	POPTR_0010s23970 (9)	scaffold_10:20386679-20387112(+) (11)	NA	Q3AV98	Uridylate kinase	AT3G10030.1	aspartate/glutamate/uridylate kinase family protein 	LOC_Os04g33300.1	"amino acid kinase, putative, expressed"	Medtr1g073630.1	Aspartate/glutamate/uridylate kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.209449.1.S1_at	A	A1TS	POPTR_0010s24000	POPTR_0010s24000 (11)	scaffold_10:20414043-20414356(-) (11)	NA	NA	NA	AT1G08230.2	Transmembrane amino acid transporter family protein 	LOC_Os01g63854.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.2	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209450.1.S1_at	A	A1TS	POPTR_0010s24010	POPTR_0010s24010 (10)	scaffold_10:20414629-20415255(-) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT1G08230.2	Transmembrane amino acid transporter family protein 	LOC_Os01g63854.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.2	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209451.1.S1_at	A	A1TS	POPTR_0010s24030	POPTR_0010s24030 (11)	scaffold_10:20430849-20431310(+) (11)	NA	Q9LZR3	Glucomannan 4-beta-mannosyltransferase 9	AT5G03760.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr1g073500.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209452.1.S1_at	A	A1TS	POPTR_0010s24040	POPTR_0010s24040 (11)	scaffold_10:20432052-20432202(-) (11)	NA	NA	NA	AT3G29034.1	unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g013150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209453.1.S1_at	A	A1MA	POPTR_0010s24050	POPTR_0010s24050 (10)	scaffold_10:20438166-20438672(+) (10)	NA	NA	NA	AT3G57810.1	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr3g103530.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209454.1.S1_at	A	A1TS	POPTR_0010s26210	POPTR_0010s26210 (11)	scaffold_10:21522299-21522697(-) (11)	NA	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.209455.1.S1_at	A	A1TS	POPTR_0010s26190	POPTR_0010s26190 (11)	scaffold_10:21510210-21511882(+) (11)	NA	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog 1	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58130.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209456.1.S1_at	A	A1TS	POPTR_0010s26090	POPTR_0010s26090 (11)	scaffold_10:21447383-21448218(-) (11)	NA	Q9H7D7	WD repeat-containing protein 26	AT5G08560.2	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209457.1.S1_at	A	A1TS	POPTR_0010s26080	POPTR_0010s26080 (11)	scaffold_10:21439841-21439879(-) (11)	NA	Q56ZN6	Pyrophosphate-energized membrane proton pump 2	AT1G78920.2	vacuolar H+-pyrophosphatase 2 	LOC_Os02g33490.1	"inorganic H+ pyrophosphatase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209457.1.S1_s_at	A	A1TS	POPTR_0010s26080	POPTR_0010s26080 (11)	scaffold_10:21439919-21440672(-) (11)	NA	Q56ZN6	Pyrophosphate-energized membrane proton pump 2	AT1G78920.2	vacuolar H+-pyrophosphatase 2 	LOC_Os02g33490.1	"inorganic H+ pyrophosphatase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209459.1.S1_at	A	A1TS	POPTR_0010s26040	POPTR_0010s26040 (11)	scaffold_10:21427688-21427895(-) (11)	NA	P33080	Auxin-induced protein X10A	AT3G20210.2	delta vacuolar processing enzyme 	LOC_Os02g05050.1	OsSAUR4 - Auxin-responsive SAUR gene family member	Medtr4g097690.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209460.1.S1_at	A	A1TS	POPTR_0010s26030	POPTR_0010s26030 (11)	scaffold_10:21423581-21424093(+) (11)	NA	P33083	Auxin-induced protein 6B	AT2G24400.1	SAUR-like auxin-responsive protein family  	LOC_Os04g51890.1	"OsSAUR20 - Auxin-responsive SAUR gene family member, expressed"	Medtr3g133040.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209461.1.S1_at	A	A1TS	POPTR_0010s25980	POPTR_0010s25980 (11)	scaffold_10:21386084-21387860(+) (11)	NA	Q9LDU6	7-dehydrocholesterol reductase	AT1G50430.1	Ergosterol biosynthesis ERG4/ERG24 family 	LOC_Os02g26650.3	"delta14-sterol reductase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209463.1.S1_s_at	A	A1TS	POPTR_0010s25850	POPTR_0010s25850 (11)	scaffold_10:21326794-21327341(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209464.1.S1_at	A	A1TS	POPTR_0010s25790	POPTR_0010s25790 (11)	scaffold_10:21294035-21294247(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209465.1.S1_at	A	A1TS	POPTR_0010s25780	POPTR_0010s25780 (11)	scaffold_10:21289065-21291472(-) (11)	NA	Q8H1G3	Metal tolerance protein C4	AT1G51610.1	Cation efflux family protein 	LOC_Os04g23180.1	"cation efflux family protein, putative, expressed"	NA	NA	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.209466.1.S1_at	A	A1TS	POPTR_0010s25760	POPTR_0010s25760 (11)	scaffold_10:21284247-21284413(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209467.1.S1_at	A	A1TS	POPTR_0010s25730	POPTR_0010s25730 (9)	scaffold_10:21256105-21256626(-) (10)	NA	Q9LU41	"Calcium-transporting ATPase 9, plasma membrane-type"	AT3G21180.1	autoinhibited Ca(2+)-ATPase 9 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.209468.1.S1_at	A	A1TS	POPTR_0010s25720	POPTR_0010s25720 (11)	scaffold_10:21254301-21254929(+) (11)	NA	O64836	LOB domain-containing protein 10	AT2G23660.2	LOB domain-containing protein 10 	LOC_Os01g66590.3	"DUF260 domain containing protein, putative, expressed"	Medtr5g017910.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209469.1.S1_at	A	A1TS	POPTR_0010s25700	POPTR_0010s25700 (11)	scaffold_10:21242283-21242846(-) (11)	NA	O54922	Exocyst complex component 7	AT4G31540.1	exocyst subunit exo70 family protein G1 	LOC_Os06g48330.1	"ATEXO70G1, putative, expressed"	Medtr1g010470.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.209470.1.S1_at	A	A1TS	POPTR_0010s25690	POPTR_0010s25690 (11)	scaffold_10:21240741-21241396(+) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15480.2	UDP-glucosyl transferase 73B5 	LOC_Os06g39070.1	"UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209472.1.S1_at	A	A1TS	POPTR_0010s25680	POPTR_0010s25680 (11)	scaffold_10:21235238-21235800(-) (11)	NA	NA	NA	AT1G31130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	NA	NA	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209473.1.S1_at	A	A1TS	POPTR_0010s25630	POPTR_0010s25630 (11)	scaffold_10:21218780-21218892(-) (11)	NA	Q54VZ8	Exocyst complex component 8	AT5G49830.1	exocyst complex component 84B 	LOC_Os07g10110.1	expressed protein	Medtr4g023160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209474.1.S1_s_at	A	A1TS	POPTR_0010s25620	POPTR_0010s25620 (11)	scaffold_10:21213675-21214092(+) (11)	NA	Q9FMQ1	"Pentatricopeptide repeat-containing protein At5g12100, mitochondrial"	AT5G12100.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os08g31110.1	"PPR repeat domain containing protein, putative, expressed"	AC233672_1.1	Pentatricopeptide repeat AC233672.2 5130-7951 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209475.1.S1_at	A	A1MS	POPTR_0010s25590	POPTR_0010s25590 (10)	scaffold_10:21195293-21195731(+) (11)	NA	P52706	(R)-mandelonitrile lyase 1	AT1G73050.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os06g44540.1	"HOTHEAD precursor, putative, expressed"	Medtr4g023240.1	Alcohol oxidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209476.1.S1_at	A	A1MS	POPTR_0010s25580	POPTR_0010s25580 (9)	scaffold_10:21190556-21192892(-) (9)	NA	NA	NA	AT1G55915.1	zinc ion binding 	LOC_Os06g09170.2	"zinc ion binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209479.1.S1_at	A	A1TS	POPTR_0010s25510	POPTR_0010s25510 (11)	scaffold_10:21166389-21168132(-) (11)	NA	NA	NA	AT1G10865.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 241 Blast hits to 241 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants - 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os09g34310.3	expressed protein	Medtr2g092090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209482.1.S1_s_at	A	A2TS	POPTR_0010s25480	POPTR_0387s00230 (11)//POPTR_0010s25480 (11)	scaffold_10:21145267-21145874(+) (11)//scaffold_387:15917-16525(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g48800.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117180.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209483.1.S1_at	A	A1MS	POPTR_0010s25470	POPTR_0010s25470 (9)	scaffold_10:21143565-21144261(-) (9)	NA	Q3EAQ5	Probable peptide/nitrate transporter At3g43790	AT3G43790.2	zinc induced facilitator-like 2 	LOC_Os12g03899.3	"major facilitator superfamily antiporter, putative, expressed"	Medtr8g073830.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209484.1.S1_at	A	A1MS	POPTR_0010s25430	POPTR_0010s25430 (11)	scaffold_10:21120219-21121210(+) (11)	NA	Q80Y81	Zinc phosphodiesterase ELAC protein 2	AT3G16260.1	tRNAse Z4 	LOC_Os01g13150.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr2g122460.1	"Hydrolase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209485.1.S1_at	A	A1TS	POPTR_0010s25410	POPTR_0010s25410 (11)	scaffold_10:21100959-21102060(-) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT5G04980.2	DNAse I-like superfamily protein 	LOC_Os05g41000.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr8g047490.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209486.1.S1_at	A	A1TS	POPTR_0010s25400	POPTR_0010s25400 (11)	scaffold_10:21093136-21093198(-) (11)	NA	Q94CB1	Probable pectinesterase/pectinesterase inhibitor 25	AT3G10720.2	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g20980.1	"pectinesterase, putative, expressed"	Medtr3g016300.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.209486.1.S1_s_at	A	A1TS	POPTR_0010s25400	POPTR_0010s25400 (11)	scaffold_10:21093298-21093472(-) (11)	NA	Q94CB1	Probable pectinesterase/pectinesterase inhibitor 25	AT3G10720.2	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g20980.1	"pectinesterase, putative, expressed"	Medtr3g016300.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.209487.1.S1_at	A	A1TS	POPTR_0010s25380	POPTR_0010s25380 (11)	scaffold_10:21092318-21092882(+) (11)	NA	Q9SG77	Putative pectinesterase/pectinesterase inhibitor 24	AT3G10710.1	root hair specific 12 	LOC_Os04g38560.1	"pectinesterase, putative, expressed"	Medtr8g026630.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.209488.1.S1_at	A	A1MS	POPTR_0010s25360	POPTR_0010s25360 (11)	scaffold_10:21071080-21071999(-) (11)	NA	Q6RET7	Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3	AT5G04870.1	calcium dependent protein kinase 1 	LOC_Os05g41090.1	"CAMK_CAMK_like_CG18020d.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g047760.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209489.1.S1_at	A	A1TS	POPTR_0010s25340	POPTR_0010s25340 (11)	scaffold_10:21062033-21065408(+) (11)	NA	Q6X5Y6	Ethylene-responsive transcription factor WRI1	AT3G54320.1	Integrase-type DNA-binding superfamily protein 	LOC_Os12g03290.1	"AP2 domain containing protein, expressed"	Medtr8g047850.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.209490.1.S1_at	A	A1TS	POPTR_0010s25330	POPTR_0010s25330 (11)	scaffold_10:21059381-21060275(+) (11)	NA	NA	NA	NA	NA	LOC_Os11g03550.1	expressed protein	Medtr8g047880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209491.1.S1_at	A	A1TS	POPTR_0010s25320	POPTR_0010s25320 (11)	scaffold_10:21043966-21046145(-) (11)	NA	Q5YLB5	"DNA gyrase subunit A, chloroplastic/mitochondrial"	AT3G10690.1	DNA GYRASE A 	LOC_Os03g59750.1	"DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative, expressed"	Medtr1g034980.1	"DNA gyrase/topoisomerase IV, subunit A; ; "	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0005524|ATP binding	GO:0005694|chromosome
PtpAffx.209492.1.S1_at	A	A1TS	POPTR_0010s25310	POPTR_0010s25310 (11)	scaffold_10:21041479-21041802(-) (11)	NA	NA	NA	AT1G32583.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g14020.1	"TPD1, putative, expressed"	Medtr3g150890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209493.1.S1_at	A	A1MS	POPTR_0010s25290	POPTR_0010s25290 (11)	scaffold_10:21035236-21035399(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os06g48520.1	"disease resistance protein RPM1, putative"	Medtr3g015730.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209494.1.S1_at	A	A1TS	POPTR_0010s25280	POPTR_0010s25280 (11)	scaffold_10:21032840-21032945(+) (11)	NA	NA	NA	AT5G18440.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink). "	LOC_Os01g59860.1	expressed protein	AC233682_40.1	hypothetical protein AC233682.2 154897-152825 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209495.1.S1_at	A	A1MS	POPTR_0010s25260	POPTR_0010s25260 (11)	scaffold_10:21022128-21022453(+) (11)	NA	NA	NA	AT1G32583.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g28750.1	"TPD1, putative, expressed"	Medtr3g150890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209496.1.S1_at	A	A1TS	POPTR_0010s25250	POPTR_0010s25250 (9)	scaffold_10:21011103-21011137(-) (9)	NA	P98204	Phospholipid-transporting ATPase 1	AT5G04930.1	aminophospholipid ATPase 1 	LOC_Os03g20949.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr8g047980.1	Haloacid dehalogenase-like hydrolase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.209496.1.S1_s_at	A	A1TS	POPTR_0010s25250	POPTR_0010s25250 (11)	scaffold_10:21011176-21011698(-) (11)	NA	P98204	Phospholipid-transporting ATPase 1	AT5G04930.1	aminophospholipid ATPase 1 	LOC_Os03g20949.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr8g047980.1	Haloacid dehalogenase-like hydrolase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.209498.1.S1_at	A	A1TS	POPTR_0010s25230	POPTR_0010s25230 (11)	scaffold_10:21005781-21006830(+) (11)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT5G04895.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.209498.1.S1_s_at	A	A2TS	POPTR_0008s01470	POPTR_0008s01470 (11)//POPTR_0010s25230 (11)	scaffold_10:21005722-21006897(+) (11)//scaffold_8:713012-714412(+) (11)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT5G04895.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.209498.1.S1_x_at	A	A1TS	POPTR_0010s25230	POPTR_0010s25230 (11)	scaffold_10:21005672-21006830(+) (11)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT5G04895.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.209499.1.S1_at	A	A1TS	POPTR_0010s25220	POPTR_0010s25220 (11)	scaffold_10:20994508-20995594(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209500.1.S1_at	A	A1TS	POPTR_0010s25210	POPTR_0010s25210 (10)	scaffold_10:20993478-20993666(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209501.1.S1_at	A	A1TS	POPTR_0010s25200	POPTR_0010s25200 (11)	scaffold_10:20991380-20992006(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209502.1.S1_at	A	A1TS	POPTR_0010s25190	POPTR_0010s25190 (11)	scaffold_10:20989315-20989856(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209503.1.S1_s_at	A	A1TS	POPTR_0010s25160	POPTR_0010s25160 (11)	scaffold_10:20979814-20982040(+) (11)	NA	Q55C17	"Trans-2,3-enoyl-CoA reductase"	AT5G16010.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os07g06800.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr6g041190.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.209505.1.S1_at	A	A1TS	POPTR_0010s25120	POPTR_0010s25120 (9)	scaffold_10:20958222-20959029(+) (9)	NA	Q9CAF5	"ABC transporter I family member 6, chloroplastic"	AT3G10670.1	non-intrinsic ABC protein 7 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209506.1.S1_at	A	A1TS	POPTR_0010s25090	POPTR_0010s25090 (10)	scaffold_10:20944514-20944926(-) (10)	NA	Q06850	Calcium-dependent protein kinase 1	AT5G04870.1	calcium dependent protein kinase 1 	LOC_Os03g57450.1	"CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209507.1.S1_at	A	A1TS	POPTR_0010s25080	POPTR_0010s25080 (11)	scaffold_10:20934889-20935428(-) (11)	NA	NA	NA	AT3G10650.1	BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). 	LOC_Os12g27090.1	expressed protein	Medtr1g112090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209508.1.S1_at	A	A1TS	POPTR_0010s25030	POPTR_0010s25030 (11)	scaffold_10:20906390-20906860(-) (11)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209509.1.S1_at	A	A1TS	POPTR_0010s25020	POPTR_0010s25020 (11)	scaffold_10:20905397-20905601(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209510.1.S1_at	A	A1MS	POPTR_0010s25000	POPTR_0010s25000 (11)	scaffold_10:20898691-20899148(-) (11)	NA	NA	NA	AT1G73970.1	unknown protein; Has 34 Blast hits to 33 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g03090.1	expressed protein	Medtr3g016590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209511.1.S1_at	A	A1TS	POPTR_0010s24980	POPTR_0010s24980 (11)	scaffold_10:20894633-20895430(-) (11)	NA	Q07488	Blue copper protein	AT5G20230.1	blue-copper-binding protein 	LOC_Os03g44630.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr1g112150.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.209512.1.S1_at	A	A1TS	POPTR_0010s24970	POPTR_0010s24970 (10)	scaffold_10:20892911-20893400(+) (11)	NA	Q9FG21	Putative RING-H2 finger protein ATL71	AT5G06490.1	RING/U-box superfamily protein 	LOC_Os03g57410.1	"RING-H2 finger protein ATL5D, putative, expressed"	Medtr1g112200.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209513.1.S1_at	A	A1TS	POPTR_0010s24960	POPTR_0010s24960 (11)	scaffold_10:20888622-20889020(+) (11)	NA	Q8RX29	RING-H2 finger protein ATL70	AT2G35910.1	RING/U-box superfamily protein 	LOC_Os07g06560.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g149630.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209514.1.S1_at	A	A1TS	POPTR_0010s24950	POPTR_0010s24950 (11)	scaffold_10:20886264-20887424(+) (11)	NA	Q8RX29	RING-H2 finger protein ATL70	AT2G35910.1	RING/U-box superfamily protein 	LOC_Os07g06560.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g149630.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209515.1.S1_at	A	A1TS	POPTR_0010s24920	POPTR_0010s24920 (11)	scaffold_10:20873603-20874209(+) (11)	NA	O81028	"Pentatricopeptide repeat-containing protein At2g26790, mitochondrial"	AT2G26790.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g43080.1	"PPR repeat domain containing protein, putative"	Medtr7g010810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209516.1.S1_at	A	A1MS	POPTR_0010s24920	POPTR_0010s24920 (11)	scaffold_10:20872478-20873416(+) (11)	NA	O81028	"Pentatricopeptide repeat-containing protein At2g26790, mitochondrial"	AT2G26790.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g43080.1	"PPR repeat domain containing protein, putative"	Medtr7g010810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209517.1.S1_at	A	A1TS	POPTR_0010s24860	POPTR_0010s24860 (11)	scaffold_10:20840872-20841295(-) (11)	NA	Q9M8J2	Probable galacturonosyltransferase-like 4	AT3G06260.1	galacturonosyltransferase-like 4 	LOC_Os03g24510.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g111450.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.209518.1.S1_at	A	A1TS	POPTR_0010s24850	POPTR_0010s24850 (11)	scaffold_10:20839042-20839501(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209519.1.S1_at	A	A1TS	POPTR_0010s24830	POPTR_0010s24830 (11)	scaffold_10:20831240-20832003(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209520.1.S1_at	A	A1TS	POPTR_0010s24800	POPTR_0010s24800 (11)	scaffold_10:20813517-20813866(+) (11)	NA	P42730	Heat shock protein 101	AT3G52490.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g33980.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr1g112350.1	"Immunoglobulin/major histocompatibility complex; Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209521.1.S1_at	A	A1TS	POPTR_0010s24790	POPTR_0010s24790 (11)	scaffold_10:20805541-20806107(+) (11)	NA	NA	NA	AT5G04820.1	ovate family protein 13 	LOC_Os01g64410.1	"ATOFP18/OFP18, putative, expressed"	AC146630_8.1	Uncharacterized plant-specific domain AC146630.25 44746-43647 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209522.1.S1_at	A	A1TS	POPTR_0010s24780	POPTR_0010s24780 (11)	scaffold_10:20798687-20798956(+) (11)	NA	NA	NA	AT3G11600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209523.1.S1_at	A	A1TS	POPTR_0010s24750	POPTR_0010s24750 (11)	scaffold_10:20783536-20784122(+) (11)	NA	Q9LZ19	Pentatricopeptide repeat-containing protein At5g04780	AT5G04780.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g06070.1	conserved hypothetical protein	Medtr7g015730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209524.1.S1_at	A	A1TS	POPTR_0010s24730	POPTR_0010s24730 (11)	scaffold_10:20777138-20777403(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os11g05690.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.209525.1.S1_at	A	A1TS	POPTR_0010s24700	POPTR_0010s24700 (11)	scaffold_10:20761258-20761706(-) (11)	NA	Q652P9	Germin-like protein 9-3	AT1G02335.1	germin-like protein subfamily 2 member 2 precursor 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107640.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.209526.1.S1_at	A	A1TS	POPTR_0010s24690	POPTR_0010s24690 (11)	scaffold_10:20759530-20760043(+) (11)	NA	Q652P9	Germin-like protein 9-3	AT3G62020.2	germin-like protein 10 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107660.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.209527.1.S1_at	A	A1TS	POPTR_0010s24680	POPTR_0010s24680 (10)	scaffold_10:20758329-20758920(-) (11)	NA	Q652P9	Germin-like protein 9-3	AT3G04200.1	RmlC-like cupins superfamily protein 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107640.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.209528.1.S1_at	A	A1TS	POPTR_0010s24620	POPTR_0010s24620 (11)	scaffold_10:20736540-20737049(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209529.1.S1_at	A	A1TS	POPTR_0010s24610	POPTR_0010s24610 (11)	scaffold_10:20732613-20733542(-) (11)	NA	NA	NA	AT3G54290.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); Has 59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os01g64250.1	"hemerythrin family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209530.1.S1_at	A	A1TS	POPTR_0010s24600	POPTR_0010s24600 (11)	scaffold_10:20728431-20729674(-) (11)	NA	Q9SEZ6	Ribonuclease H2 subunit A	AT2G25100.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os11g05570.1	"RNASEH2A - Putative ribonuclease H2 large subunit, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209531.1.S1_at	A	A1TS	POPTR_0010s24590	POPTR_0010s24590 (11)	scaffold_10:20726058-20727807(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209532.1.S1_at	A	A1TS	POPTR_0010s24540	POPTR_0010s24540 (11)	scaffold_10:20709113-20709649(+) (11)	NA	NA	NA	AT3G18650.1	AGAMOUS-like 103 	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.209533.1.S1_at	A	A1TS	POPTR_0010s24530	POPTR_0010s24530 (10)	scaffold_10:20705687-20705720(-) (10)	NA	Q8LBM4	"Iron-sulfur assembly protein IscA-like 1, mitochondrial"	AT2G16710.1	Iron-sulphur cluster biosynthesis family protein 	LOC_Os12g30030.1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"	Medtr4g141040.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209533.1.S1_s_at	A	A1TS	POPTR_0010s24530	POPTR_0010s24530 (11)	scaffold_10:20705837-20706924(-) (11)	NA	Q8LBM4	"Iron-sulfur assembly protein IscA-like 1, mitochondrial"	AT2G16710.1	Iron-sulphur cluster biosynthesis family protein 	LOC_Os12g30030.1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"	Medtr4g141040.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209534.1.S1_at	A	A1TS	POPTR_0010s24500	POPTR_0010s24500 (11)	scaffold_10:20697908-20699698(-) (11)	NA	B2RYJ4	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	NA	NA	LOC_Os12g03960.1	"dehydrogenase-phosphopantetheinyltransferase, putative, expressed"	NA	NA	GO:0009059|macromolecule biosynthetic process	GO:0008897|holo-[acyl-carrier-protein] synthase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.209535.1.S1_s_at	A	A1TS	POPTR_0010s24490	POPTR_0010s24490 (11)	scaffold_10:20696887-20697459(+) (11)	NA	NA	NA	AT5G22450.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73620.1	expressed protein	Medtr4g070070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209536.1.S1_x_at	A	A1MS	POPTR_0010s24480	POPTR_0010s24480 (9)	scaffold_10:20680554-20681526(-) (9)	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT5G04740.1	ACT domain-containing protein 	LOC_Os12g05650.1	"ACT domain containing protein, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209537.1.S1_at	A	A1TS	POPTR_0010s24460	POPTR_0010s24460 (11)	scaffold_10:20666550-20667172(-) (11)	NA	Q9SR72	Germin-like protein subfamily 3 member 2	AT3G10080.1	RmlC-like cupins superfamily protein 	LOC_Os02g32980.1	"Cupin domain containing protein, expressed"	Medtr1g093090.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.209537.1.S1_s_at	A	A1TS	POPTR_0010s24460	POPTR_0010s24460 (11)	scaffold_10:20666568-20667394(-) (11)	NA	Q9SR72	Germin-like protein subfamily 3 member 2	AT3G10080.1	RmlC-like cupins superfamily protein 	LOC_Os02g32980.1	"Cupin domain containing protein, expressed"	Medtr1g093090.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.209538.1.S1_at	A	A1TS	POPTR_0010s24450	POPTR_0010s24450 (11)	scaffold_10:20657144-20658938(-) (11)	NA	NA	NA	AT1G30240.2	unknown protein; Has 169 Blast hits to 168 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os05g22990.1	expressed protein	AC233651_2.1	"binding, related AC233651.1 4090-2544 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209539.1.S1_at	A	A1TS	POPTR_0010s24410	POPTR_0010s24410 (11)	scaffold_10:20635954-20636129(+) (11)	NA	NA	NA	AT3G52770.1	protein binding 	LOC_Os04g33560.1	expressed protein	Medtr7g127200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209540.1.S1_at	A	A1TS	POPTR_0010s24360	POPTR_0010s24360 (11)	scaffold_10:20608331-20609110(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209541.1.S1_s_at	A	A1TS	POPTR_0010s24350	POPTR_0010s24350 (11)	scaffold_10:20605758-20606114(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.209542.1.S1_at	A	A1TS	POPTR_0010s24320	POPTR_0010s24320 (11)	scaffold_10:20595640-20595840(+) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.209542.1.S1_x_at	A	A1TS	POPTR_0010s24320	POPTR_0010s24320 (11)	scaffold_10:20595352-20595840(+) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.209543.1.S1_at	A	A1MA	POPTR_0010s24320	POPTR_0010s24320 (10)	scaffold_10:20594770-20594878(-) (10)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.209544.1.S1_at	A	A1TS	POPTR_0010s24310	POPTR_0010s24310 (11)	scaffold_10:20583997-20584586(-) (11)	NA	O81117	Cytochrome P450 94A1	AT2G27690.1	"cytochrome P450, family 94, subfamily C, polypeptide 1 "	LOC_Os01g63930.2	"cytochrome P450, putative, expressed"	Medtr4g072990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209545.1.S1_at	A	A1TS	POPTR_0010s24280	POPTR_0010s24280 (11)	scaffold_10:20573182-20574804(-) (11)	NA	O24415	60S acidic ribosomal protein P2B	AT3G44590.1	60S acidic ribosomal protein family 	LOC_Os05g37330.1	"60S acidic ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.209546.1.S1_at	A	A1TS	POPTR_0010s24270	POPTR_0010s24270 (11)	scaffold_10:20569922-20571123(+) (11)	NA	Q6VAK4	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os09g39400.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr1g098840.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.209547.1.S1_at	A	A1TS	POPTR_0010s24260	POPTR_0010s24260 (11)	scaffold_10:20565527-20565988(+) (11)	NA	A2YBX5	Protein kinase G11A	AT3G44610.1	Protein kinase superfamily protein 	LOC_Os11g05320.1	"AGC_PVPK_like_kin82y.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209548.1.S1_at	A	A1MS	POPTR_0010s24240	POPTR_0010s24240 (11)	scaffold_10:20546402-20546495(-) (11)	NA	NA	NA	AT5G04670.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os02g01020.1	expressed protein	Medtr1g117100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209548.1.S1_s_at	A	A1TS	POPTR_0010s24240	POPTR_0010s24240 (11)	scaffold_10:20546514-20546960(-) (11)	NA	NA	NA	AT5G04670.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os02g01020.1	expressed protein	Medtr1g117100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209549.1.S1_at	A	A1TS	POPTR_0010s24230	POPTR_0010s24230 (9)	scaffold_10:20534291-20534818(-) (9)	NA	Q2PCF1	Pleiotropic drug resistance protein 2	AT1G66950.1	pleiotropic drug resistance 11 	LOC_Os11g37700.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr1g117060.1	AAA ATPase; 	NA	NA	GO:0016020|membrane
PtpAffx.209550.1.S1_at	A	A1MS	POPTR_0010s24220	POPTR_0010s24220 (11)	scaffold_10:20531789-20531891(+) (11)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os11g37070.1	expressed protein	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209551.1.S1_at	A	A1TS	POPTR_0010s24210	POPTR_0010s24210 (11)	scaffold_10:20525345-20526056(-) (11)	NA	NA	NA	AT3G52900.1	Family of unknown function (DUF662)  	LOC_Os04g33450.2	expressed protein	Medtr1g117010.1	Protein of unknown function DUF662 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209553.1.S1_at	A	A1TS	POPTR_0010s24190	POPTR_0010s24190 (11)	scaffold_10:20520369-20520938(-) (11)	NA	NA	NA	AT2G38790.1	unknown protein; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209555.1.S1_at	A	A1MS	POPTR_0010s24150	POPTR_0010s24150 (9)	scaffold_10:20506781-20507026(+) (9)	NA	NA	NA	AT5G04660.1	"cytochrome P450, family 77, subfamily A, polypeptide 4 "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209556.1.S1_at	A	A1TS	POPTR_0010s24150	POPTR_0010s24150 (9)	scaffold_10:20506438-20506588(+) (10)	NA	NA	NA	AT5G04660.1	"cytochrome P450, family 77, subfamily A, polypeptide 4 "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209557.1.S1_at	A	A1TS	POPTR_0010s24140	POPTR_0010s24140 (11)	scaffold_10:20502307-20502860(+) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT5G03680.1	Duplicated homeodomain-like superfamily protein 	LOC_Os10g37240.4	expressed protein	Medtr1g116980.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209558.1.S1_at	A	A1TS	POPTR_0010s24100	POPTR_0010s24100 (11)	scaffold_10:20480964-20481398(+) (11)	NA	Q6NTR1	Methyltransferase-like protein 13	AT5G04610.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g40890.1	"spermidine synthase-related, putative, expressed"	Medtr4g133500.1	"Putative methyltransferase KIAA0859 homolog, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209558.1.S1_s_at	A	A1TS	POPTR_0010s24100	POPTR_0010s24100 (11)	scaffold_10:20480734-20481224(+) (11)	NA	Q6NTR1	Methyltransferase-like protein 13	AT5G04610.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g40890.1	"spermidine synthase-related, putative, expressed"	Medtr4g133500.1	"Putative methyltransferase KIAA0859 homolog, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209559.1.S1_at	A	A1TS	POPTR_0010s24080	POPTR_0010s24080 (11)	scaffold_10:20476721-20477247(+) (11)	NA	Q9CA58	Putative pentatricopeptide repeat-containing protein At1g74580	AT1G74580.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g01130.1	"pentatricopeptide containing protein, putative, expressed"	Medtr8g112280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209560.1.S1_at	A	A1TS	POPTR_0010s24060	POPTR_0010s24060 (11)	scaffold_10:20467426-20468089(+) (11)	NA	Q8LK56	Transcriptional activator DEMETER	AT5G04560.2	HhH-GPD base excision DNA repair family protein 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	NA
PtpAffx.209561.1.S1_at	A	A1TS	POPTR_0010s24060	POPTR_0010s24060 (11)	scaffold_10:20460286-20460793(+) (11)	NA	Q8LK56	Transcriptional activator DEMETER	AT5G04560.2	HhH-GPD base excision DNA repair family protein 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	NA
PtpAffx.209562.1.S1_at	A	A1TS	POPTR_0021s01040	POPTR_0021s01040 (11)	scaffold_21:616967-617425(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g65510.1	"OsFBX31 - F-box domain containing protein, expressed"	Medtr8g133720.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209563.1.S1_at	A	A1TS	POPTR_0021s01030	POPTR_0021s01030 (11)	scaffold_21:614011-615110(-) (11)	NA	NA	NA	AT4G04870.1	cardiolipin synthase 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209564.1.S1_at	A	A1TS	POPTR_0021s00990	POPTR_0021s00990 (11)	scaffold_21:586041-586591(+) (11)	NA	Q50EK1	Cytochrome P450 716B1	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33440.1	"cytochrome P450, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209566.1.S1_at	A	A1TS	POPTR_0021s00980	POPTR_0021s00980 (11)	scaffold_21:582998-583666(+) (11)	NA	Q50EK1	Cytochrome P450 716B1	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33620.1	"cytochrome P450 domain containing protein, expressed"	Medtr5g099470.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209567.1.S1_at	A	A1TS	POPTR_0021s00970	POPTR_0021s00970 (11)	scaffold_21:577941-579263(+) (11)	NA	Q42569	Cytochrome P450 90A1	AT5G05690.1	Cytochrome P450 superfamily protein 	LOC_Os07g33540.1	"cytochrome P450, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209568.1.S1_at	A	A1TS	POPTR_0021s00960	POPTR_0021s00960 (11)	scaffold_21:568925-569688(+) (11)	NA	Q50EK1	Cytochrome P450 716B1	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33620.1	"cytochrome P450 domain containing protein, expressed"	Medtr5g099470.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209569.1.S1_at	A	A1MS	POPTR_0021s00950	POPTR_0021s00950 (11)	scaffold_21:564141-564334(+) (11)	NA	O49710	15.4 kDa class V heat shock protein	AT4G21870.1	HSP20-like chaperones superfamily protein 	LOC_Os07g33350.1	"hsp20/alpha crystallin family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209570.1.S1_at	A	A1TS	POPTR_0021s00940	POPTR_0021s00940 (11)	scaffold_21:561809-562875(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209571.1.S1_at	A	A1TS	POPTR_0021s00930	POPTR_0021s00930 (11)	scaffold_21:560682-561140(+) (11)	NA	NA	NA	AT4G21890.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g29770.2	"zinc finger protein, putative, expressed"	Medtr5g037560.1	"zinc finger family protein, putative "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.209572.1.S1_at	A	A2TS	POPTR_0021s00910	POPTR_0021s00910 (11)//POPTR_0021s00920 (10)	scaffold_21:555296-555799(+) (11)	NA	NA	NA	AT5G52890.2	AT hook motif-containing protein 	NA	NA	Medtr8g146670.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.209573.1.S1_at	A	A1TS	POPTR_0021s00900	POPTR_0021s00900 (11)	scaffold_21:552941-553241(-) (11)	NA	Q9ZS97	"UPF0051 protein ABCI8, chloroplastic"	AT4G04770.1	ATP binding cassette protein 1 	LOC_Os01g61400.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr7g029700.1	FeS assembly protein SufB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209574.1.S1_at	A	A1TS	POPTR_0021s00790	POPTR_0021s00790 (11)	scaffold_21:458793-460452(+) (11)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT1G61900.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1). 	LOC_Os07g01240.1	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209575.1.S1_at	A	A1TS	POPTR_0021s00780	POPTR_0021s00780 (11)	scaffold_21:452175-452530(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g146680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209576.1.S1_at	A	A1TS	POPTR_0021s00770	POPTR_0021s00770 (11)	scaffold_21:439629-440096(-) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT1G50660.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). 	LOC_Os05g41910.1	expressed protein	Medtr5g099930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209577.1.S1_at	A	A1TS	POPTR_0021s00760	POPTR_0021s00760 (11)	scaffold_21:428711-428904(-) (11)	NA	NA	NA	AT1G11700.1	"Protein of unknown function, DUF584 "	LOC_Os01g64300.1	"DUF584 domain containing protein, putative, expressed"	Medtr8g146700.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209577.1.S1_x_at	A	A1TS	POPTR_0021s00760	POPTR_0021s00760 (11)	scaffold_21:428448-429034(-) (11)	NA	NA	NA	AT1G11700.1	"Protein of unknown function, DUF584 "	LOC_Os01g64300.1	"DUF584 domain containing protein, putative, expressed"	Medtr8g146700.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209578.1.S1_at	A	A1TS	POPTR_0021s00740	POPTR_0021s00740 (11)	scaffold_21:399712-401134(-) (11)	NA	NA	NA	AT1G64570.1	Homeodomain-like superfamily protein 	LOC_Os03g46950.1	"DNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209579.1.S1_at	A	A1TS	POPTR_0021s00730	POPTR_0021s00730 (11)	scaffold_21:398847-399422(+) (11)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209580.1.S1_at	A	A1TS	POPTR_0021s00720	POPTR_0021s00720 (11)	scaffold_21:385610-386051(-) (11)	NA	Q9SAA6	"Pentatricopeptide repeat-containing protein At1g11710, mitochondrial"	AT1G11710.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g05920.1	"Rf1, mitochondrial precursor, putative, expressed"	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209581.1.S1_at	A	A1TS	POPTR_0021s00690	POPTR_0021s00690 (11)	scaffold_21:379445-380033(+) (11)	NA	P83332	Thaumatin-like protein 1	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209582.1.S1_at	A	A1TS	POPTR_0021s00670	POPTR_0021s00670 (10)	scaffold_21:365320-365801(+) (11)	NA	P83332	Thaumatin-like protein 1	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209583.1.S1_at	A	A1TS	POPTR_0021s00660	POPTR_0021s00660 (11)	scaffold_21:354249-354625(-) (11)	POPTR_0021s00650 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209585.1.S1_at	A	A1TS	POPTR_0021s00630	POPTR_0021s00630 (11)	scaffold_21:328233-329692(-) (11)	NA	A8MRC7	"Probable beta-1,3-galactosyltransferase 2"	AT1G05170.2	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.209586.1.S1_at	A	A1TS	POPTR_0021s00600	POPTR_0021s00600 (11)	scaffold_21:288007-289424(-) (11)	NA	Q7ZYD9	Ankyrin repeat domain-containing protein 13C-B	AT1G62050.1	Ankyrin repeat family protein 	LOC_Os07g32790.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209587.1.S1_at	A	A1TS	POPTR_0021s00580	POPTR_0021s00580 (11)	scaffold_21:272080-272617(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g133720.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209588.1.S1_s_at	A	A2TS	POPTR_0021s00570	POPTR_0183s00210 (11)//POPTR_0021s00570 (11)	scaffold_183:18643-18923(+) (11)//scaffold_21:262909-263189(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.209589.1.S1_at	A	A1TS	POPTR_0021s00540	POPTR_0021s00540 (11)	scaffold_21:243592-243917(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209590.1.S1_x_at	A	A1TS	POPTR_0021s00510	POPTR_0021s00510 (11)	scaffold_21:212974-213281(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.209592.1.S1_at	A	A1TS	POPTR_0021s00480	POPTR_0021s00480 (11)	scaffold_21:183318-183517(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209592.1.S1_s_at	A	A2TS	POPTR_0021s00480	POPTR_0021s00480 (11)//POPTR_0183s00250 (11)	scaffold_183:26258-26596(+) (11)//scaffold_21:183219-183557(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209593.1.S1_at	A	A1TS	POPTR_0021s00470	POPTR_0021s00470 (11)	scaffold_21:164275-164538(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g043570.1	"Peptidase aspartic, active site; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.209595.1.S1_at	A	A1TS	POPTR_0021s00450	POPTR_0021s00450 (11)	scaffold_21:143374-144935(-) (11)	NA	O65399	"Glucan endo-1,3-beta-glucosidase 1"	AT1G11820.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os07g32600.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g146960.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.209596.1.S1_at	A	A1TS	POPTR_0021s00440	POPTR_0021s00440 (11)	scaffold_21:140958-142095(+) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT1G09910.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.2	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127440.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209597.1.S1_at	A	A1TS	POPTR_0021s00430	POPTR_0021s00430 (11)	scaffold_21:134171-134812(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G40260.1	Homeodomain-like superfamily protein 	LOC_Os03g03760.1	"MYB family transcription factor, putative, expressed"	Medtr4g134780.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209598.1.S1_at	A	A1TS	POPTR_0021s00420	POPTR_0021s00420 (11)	scaffold_21:132144-133105(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209599.1.S1_at	A	A1TS	POPTR_0021s00410	POPTR_0021s00410 (11)	scaffold_21:130173-130466(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20960.1.S1_at	A	A1TS	POPTR_0015s01470	POPTR_0015s01470 (10)	scaffold_15:898906-899384(-) (10)	NA	Q9FNF2	"Soluble starch synthase, chloroplastic/amyloplastic"	AT5G24300.2	"Glycogen/starch synthases, ADP-glucose type "	LOC_Os06g06560.1	"starch synthase, putative, expressed"	Medtr3g123800.1	"Glycosyl transferase, group 1; N-6 Adenine-specific DNA methylase "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.209601.1.S1_at	A	A1TS	POPTR_0021s00340	POPTR_0021s00340 (11)	scaffold_21:96908-97096(-) (11)	NA	NA	NA	AT5G42570.1	B-cell receptor-associated 31-like 	LOC_Os05g19040.1	"prefoldin, putative, expressed"	Medtr4g064750.1	B-cell receptor-associated 31-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209602.1.S1_at	A	A1MS	POPTR_0021s00310	POPTR_0021s00310 (10)	scaffold_21:95848-96524(+) (11)	NA	NA	NA	AT1G62280.1	SLAC1 homologue 1 	LOC_Os05g18670.1	"C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed"	Medtr8g147090.1	C4-dicarboxylate transporter/malic acid transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209603.1.S1_at	A	A1TS	POPTR_0021s00300	POPTR_0021s00300 (11)	scaffold_21:94278-94784(+) (11)	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT5G55090.1	mitogen-activated protein kinase kinase kinase 15 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g064870.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209605.1.S1_at	A	A1TS	POPTR_0021s00280	POPTR_0021s00280 (11)	scaffold_21:77428-77973(+) (11)	NA	Q9C519	WRKY transcription factor 6	AT1G62300.1	WRKY family transcription factor 	LOC_Os01g14440.1	"OsWRKY1v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr8g147130.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.209606.1.S1_at	A	A2TS	POPTR_0011s00250	POPTR_0011s00250 (10)//POPTR_0021s00260 (10)	scaffold_11:43489-44516(+) (10)//scaffold_21:58509-62599(+) (11)	NA	O65388	Putative pectate lyase 2	AT1G11920.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g147150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209607.1.S1_s_at	A	A2TS	POPTR_0011s00240	POPTR_0021s00250 (11)//POPTR_0011s00240 (11)	scaffold_11:39312-39458(+) (11)//scaffold_21:54462-54608(+) (11)	NA	O65456	Probable pectate lyase 16	AT4G22080.1	root hair specific 14 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g147150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209608.1.S1_x_at	A	A1TS	POPTR_0021s00250	POPTR_0021s00250 (10)	scaffold_21:52709-52886(+) (10)	NA	O65456	Probable pectate lyase 16	AT4G22080.1	root hair specific 14 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g147150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209609.1.S1_at	A	A1TS	POPTR_0021s00240	POPTR_0021s00240 (11)	scaffold_21:51513-51837(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.209611.1.S1_at	A	A1TS	POPTR_0011s00230	POPTR_0011s00230 (11)	scaffold_11:31730-32317(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209612.1.S1_at	A	A1TS	POPTR_0021s00225	POPTR_0021s00225 (11)	scaffold_21:45604-46059(+) (11)	NA	NA	NA	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g012420.1	TIR; Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.209613.1.S1_at	A	A1TS	POPTR_0021s00200	POPTR_0021s00200 (11)	scaffold_21:7859-8344(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209615.1.S1_s_at	A	A3TS	POPTR_0011s01320	POPTR_0011s01320 (11)//POPTR_0011s01370 (11)//POPTR_0011s01380 (11)	scaffold_11:884669-884885(-) (11)//scaffold_11:960011-960227(-) (11)//scaffold_11:973109-973325(-) (11)	NA	NA	NA	AT1G11925.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209617.1.S1_at	A	A1TS	POPTR_0011s01385	POPTR_0011s01385 (10)	scaffold_11:980057-980108(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g024390.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.209619.1.S1_at	A	A1TS	POPTR_0011s01420	POPTR_0011s01420 (11)	scaffold_11:996543-997393(-) (11)	NA	Q2S415	Leucyl-tRNA synthetase	AT4G04350.1	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os01g03020.1	"tRNA synthetase class I, putative, expressed"	Medtr8g147170.1	"Aminoacyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.20962.1.S1_at	A	A1TS	POPTR_0002s25720	POPTR_0002s25720 (11)	scaffold_2:22806945-22807922(+) (11)	NA	Q5BK63	"NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (Fragment)"	AT2G20360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g57180.1	"NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed"	NA	NA	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.20962.2.A1_a_at	A	A1TS	POPTR_0014s18680	POPTR_0014s18680 (10)	scaffold_14:16047029-16047745(+) (10)	NA	Q559Z0	"NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial"	AT2G20360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g57180.1	"NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209621.1.S1_at	A	A1TS	POPTR_0011s01450	POPTR_0011s01450 (11)	scaffold_11:1019672-1020877(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT4G22120.6	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.209622.1.S1_s_at	A	A1TS	POPTR_0011s01480	POPTR_0011s01480 (10)	scaffold_11:1045149-1045756(-) (11)//scaffold_11:1056277-1056884(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209624.1.S1_at	A	A1TS	POPTR_0011s01530	POPTR_0011s01530 (11)	scaffold_11:1067412-1070212(-) (11)	NA	O95822	"Malonyl-CoA decarboxylase, mitochondrial"	AT4G04320.2	malonyl-CoA decarboxylase family protein 	LOC_Os09g23070.1	"malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0050080|malonyl-CoA decarboxylase activity	NA
PtpAffx.209625.1.S1_at	A	A1MS	POPTR_0004s00710	POPTR_0004s00710 (10)	scaffold_4:288013-288199(-) (10)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT4G22130.1	STRUBBELIG-receptor family 8 	LOC_Os02g09740.1	"STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed"	Medtr7g111570.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.209626.1.S1_at	A	A1TS	POPTR_0011s01540	POPTR_0011s01540 (9)	scaffold_11:1088130-1089290(+) (9)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT4G22130.1	STRUBBELIG-receptor family 8 	LOC_Os02g09740.1	"STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.209626.1.S1_s_at	A	A2TS	POPTR_0004s00710	POPTR_0004s00710 (11)//POPTR_0011s01540 (10)	scaffold_11:1088118-1088635(+) (10)//scaffold_4:286380-286928(-) (11)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT4G22130.1	STRUBBELIG-receptor family 8 	LOC_Os02g09740.1	"STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed"	Medtr7g111570.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.209627.1.S1_at	A	A1TS	POPTR_0011s01550	POPTR_0011s01550 (11)	scaffold_11:1094030-1096073(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G62330.1	O-fucosyltransferase family protein 	LOC_Os06g35410.1	"growth regulator related protein, putative, expressed"	Medtr8g147250.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209628.1.S1_at	A	A1TS	POPTR_0011s01560	POPTR_0011s01560 (11)	scaffold_11:1096812-1097324(-) (11)	NA	O65351	Subtilisin-like protease	AT1G62340.1	PA-domain containing subtilase family protein 	LOC_Os06g48650.2	"OsSub52 - Putative Subtilisin homologue, expressed"	Medtr8g147280.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.209629.1.S1_at	A	A1MS	POPTR_0011s01640	POPTR_0011s01640 (10)	scaffold_11:1144329-1145000(-) (11)	NA	NA	NA	AT4G22190.1	unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). 	LOC_Os11g30430.1	expressed protein	Medtr2g029070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209630.1.S1_x_at	A	A1TS	POPTR_0011s01666	POPTR_0011s01666 (11)	scaffold_11:1184990-1185456(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g020970.1	"Leucine-rich repeat; Leucine-rich, related "	NA	GO:0005515|protein binding	NA
PtpAffx.209635.1.S1_s_at	A	A1TS	POPTR_0011s00230	POPTR_0011s00230 (11)	scaffold_11:31853-32086(+) (11)//scaffold_11:1423752-1423985(+) (11)//scaffold_11:1484037-1484270(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209639.1.S1_at	A	A1TS	POPTR_0011s01943	POPTR_0011s01943 (9)	scaffold_11:1537611-1541164(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.209640.1.S1_at	A	A1TS	POPTR_0011s01750	POPTR_0011s01750 (11)	scaffold_11:1344750-1354883(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g018230.1	TIR; NB-ARC; AAA ATPase 	NA	GO:0005515|protein binding	NA
PtpAffx.209641.1.S1_x_at	A	A1TS	POPTR_0011s01680	POPTR_0011s01680 (11)	scaffold_11:1207477-1207818(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209643.1.S1_at	A	A1TS	POPTR_0011s01725	POPTR_0011s01725 (11)	scaffold_11:1320424-1320850(+) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr7g105900.1	TIR; NB-ARC; AAA ATPase 	NA	GO:0005515|protein binding	NA
PtpAffx.209644.1.S1_at	A	A1TS	POPTR_0011s01730	POPTR_0011s01730 (11)	scaffold_11:1322486-1323060(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209644.1.S1_x_at	A	A1TS	POPTR_0011s01730	POPTR_0011s01730 (11)	scaffold_11:1322486-1323060(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209645.1.S1_at	A	A1TS	POPTR_0011s01740	POPTR_0011s01740 (11)	scaffold_11:1329828-1330266(-) (11)//scaffold_605:9735-10043(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g097240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209647.1.S1_s_at	A	A4TS	POPTR_0011s01310	POPTR_0011s01310 (9)//POPTR_0011s01956 (9)//POPTR_0266s00010 (9)//POPTR_0011s01340 (9)	scaffold_11:845925-845959(-) (9)//scaffold_11:899963-899997(-) (9)//scaffold_11:1207368-1207402(+) (9)//scaffold_11:1278202-1278236(+) (9)//scaffold_11:1514963-1514997(+) (9)//scaffold_11:1607272-1607306(+) (9)//scaffold_18:2569558-2569592(-) (9)//scaffold_266:22980-23014(+) (9)	NA	NA	NA	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	NA	NA	Medtr6g008750.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.209649.1.S1_at	A	A1TS	POPTR_0011s01865	POPTR_0011s01865 (11)	scaffold_11:1450372-1451132(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209651.1.S1_at	A	A1TS	POPTR_0011s01940	POPTR_0011s01940 (11)	scaffold_11:1209334-1209443(-) (11)//scaffold_11:1224545-1224654(-) (10)//scaffold_11:1385924-1386033(-) (11)//scaffold_11:1425148-1425257(-) (9)//scaffold_11:1485430-1485539(-) (11)//scaffold_11:1517289-1517398(-) (11)//scaffold_11:1591953-1592062(-) (11)//scaffold_11:1608905-1609014(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209652.1.S1_s_at	A	A1TS	POPTR_0011s02010	POPTR_0011s02010 (11)	scaffold_11:1677299-1677346(-) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209653.1.S1_at	A	A1MS	POPTR_0011s02010	POPTR_0011s02010 (9)	scaffold_11:1679305-1679867(-) (10)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209657.1.S1_s_at	A	A1TS	POPTR_0011s02020	POPTR_0011s02020 (11)	scaffold_11:640621-646170(+) (11)//scaffold_11:1639746-1640093(-) (11)//scaffold_11:1686004-1686351(-) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209658.1.S1_at	A	A1TS	POPTR_0011s01100	POPTR_0011s01100 (10)	scaffold_11:605126-605694(+) (10)	NA	Q41141	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta	AT1G12000.1	Phosphofructokinase family protein 	NA	NA	Medtr8g147360.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209661.1.S1_at	A	A1TS	POPTR_0011s01200	POPTR_0011s01200 (11)	scaffold_11:721969-722517(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209662.1.S1_at	A	A1TS	POPTR_0011s01150	POPTR_0011s01150 (11)	scaffold_11:675187-675961(+) (11)	NA	Q9ZWQ8	"Plastid-lipid-associated protein, chloroplastic"	AT4G22240.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os09g04790.1	"PAP fibrillin family domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209664.1.S1_at	A	A1TS	POPTR_0062s00220	POPTR_0062s00220 (11)	scaffold_62:32917-33282(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209664.1.S1_s_at	A	A1TS	POPTR_0062s00220	POPTR_0062s00220 (11)	scaffold_1:22018968-22019149(+) (10)//scaffold_1:42602347-42602528(+) (9)//scaffold_1:44243924-44244105(+) (11)//scaffold_14:3800043-3800224(-) (10)//scaffold_4:9501905-9502086(-) (11)//scaffold_62:33267-33448(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209664.1.S1_x_at	A	A1TS	POPTR_0062s00220	POPTR_0062s00220 (11)	scaffold_62:32917-33442(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209666.1.S1_x_at	A	A1TS	POPTR_0011s00980	POPTR_0011s00980 (9)	scaffold_11:514304-514564(-) (9)	NA	NA	NA	AT4G03965.1	RING/U-box superfamily protein 	NA	NA	Medtr8g147420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209668.1.S1_at	A	A2TS	POPTR_0011s00920	POPTR_0011s00940 (9)//POPTR_0011s00920 (9)	scaffold_11:478747-487748(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G11080.1	receptor like protein 35 	LOC_Os04g40440.1	expressed protein	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.209669.1.S1_at	A	A1TS	POPTR_0011s00880	POPTR_0011s00880 (11)	scaffold_11:447343-447664(+) (11)	NA	Q41073	Non-specific lipid-transfer protein	NA	NA	LOC_Os03g59380.1	"LTPL28 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g061270.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20967.1.S1_at	A	A1TS	POPTR_0018s06590	POPTR_0018s06590 (11)	scaffold_18:6623851-6624261(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT4G17486.1	PPPDE putative thiol peptidase family protein 	LOC_Os06g36490.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr8g119510.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209670.1.S1_at	A	A1TS	POPTR_0011s00820	POPTR_0011s00820 (11)	scaffold_11:415211-415462(+) (11)	NA	NA	NA	AT4G22290.1	Ubiquitin-specific protease family C19-related protein 	NA	NA	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209670.1.S1_x_at	A	A1TS	POPTR_0011s00820	POPTR_0011s00820 (11)	scaffold_11:407592-415462(+) (11)	NA	NA	NA	AT4G22290.1	Ubiquitin-specific protease family C19-related protein 	NA	NA	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209671.1.S1_at	A	A1TS	POPTR_0011s00790	POPTR_0011s00790 (11)	scaffold_11:406438-407580(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT4G22290.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209672.1.S1_at	A	A1TS	POPTR_0011s00780	POPTR_0011s00780 (11)	scaffold_11:389432-391824(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT1G62400.1	Protein kinase superfamily protein 	LOC_Os06g43030.1	"protein kinase domain containing protein, expressed"	Medtr8g147530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209672.1.S1_s_at	A	A2TS	POPTR_0004s00360	POPTR_0004s00360 (11)//POPTR_0011s00780 (11)	scaffold_11:391507-391932(-) (11)//scaffold_4:104476-104901(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT1G62400.1	Protein kinase superfamily protein 	LOC_Os06g43030.1	"protein kinase domain containing protein, expressed"	Medtr8g147530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209673.1.S1_at	A	A1TS	POPTR_0011s00710	POPTR_0011s00710 (11)	scaffold_11:359539-359718(+) (11)	NA	NA	NA	AT1G62420.1	Protein of unknown function (DUF506)  	LOC_Os11g25040.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr8g147620.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209673.1.S1_s_at	A	A1TS	POPTR_0011s00710	POPTR_0011s00710 (11)	scaffold_11:359031-359524(+) (11)	NA	NA	NA	AT1G62420.1	Protein of unknown function (DUF506)  	LOC_Os11g25040.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr8g147620.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209674.1.S1_at	A	A1TS	POPTR_0011s00690	POPTR_0011s00690 (11)	scaffold_11:346161-346661(-) (11)	NA	Q9SCT4	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2	AT3G17640.1	Leucine-rich repeat (LRR) family protein 	LOC_Os06g28480.1	"polygalacturonase inhibitor 1 precursor, putative, expressed"	Medtr3g107120.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.209676.1.S1_at	A	A1TS	POPTR_0011s00660	POPTR_0011s00660 (11)	scaffold_11:328696-329128(-) (11)	NA	Q8CG07	ATPase WRNIP1	AT1G24290.1	AAA-type ATPase family protein 	NA	NA	Medtr5g106490.1	Ubiquitin-associated; AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.209677.1.S1_at	A	A1TS	POPTR_0011s00600	POPTR_0011s00600 (11)	scaffold_11:281588-282809(-) (11)	NA	Q8H1R7	F-box/FBD/LRR-repeat protein At4g26340	AT4G26340.1	F-box/RNI-like/FBD-like domains-containing protein 	LOC_Os11g09970.1	"OsFBX411 - F-box domain containing protein, expressed"	Medtr5g005860.1	Cyclin-like F-box; FBD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209678.1.S1_at	A	A1TS	POPTR_0011s00590	POPTR_0011s00590 (11)	scaffold_11:277471-278212(-) (11)	NA	Q9SMU0	Putative F-box/FBD/LRR-repeat protein At3g49030	AT3G49030.1	"FBD, F-box and Leucine Rich Repeat domains containing protein "	LOC_Os11g10330.1	"OsFBX416 - F-box domain containing protein, expressed"	Medtr4g110360.1	Cyclin-like F-box; FBD; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209679.1.S1_at	A	A1TS	POPTR_0011s00580	POPTR_0011s00580 (11)	scaffold_11:276069-277139(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209680.1.S1_at	A	A1TS	POPTR_0011s00560	POPTR_0011s00560 (11)	scaffold_11:269299-270049(+) (11)	NA	Q94B46	F-box/LRR-repeat protein At4g14096	AT4G14096.1	F-box/RNI-like superfamily protein 	LOC_Os10g03740.2	"OsFBX348 - F-box domain containing protein, expressed"	Medtr5g005860.1	Cyclin-like F-box; FBD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209681.1.S1_at	A	A1TS	POPTR_0011s00540	POPTR_0011s00540 (11)	scaffold_11:254310-255138(-) (11)	NA	Q10237	Uncharacterized protein C4G9.04c	AT4G04885.1	PCF11P-similar protein 4 	LOC_Os08g08830.1	expressed protein	Medtr4g098610.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209682.1.S1_at	A	A1TS	POPTR_0011s00530	POPTR_0011s00530 (11)	scaffold_11:250623-251170(+) (11)	NA	O50046	"Tryptophan synthase beta chain 2, chloroplastic"	AT5G28237.1	Pyridoxal-5'-phosphate-dependent enzyme family protein 	LOC_Os08g04180.1	"tryptophan synthase beta chain 1, putative, expressed"	Medtr3g064270.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.209683.1.S1_at	A	A1TS	POPTR_0011s00510	POPTR_0011s00510 (11)	scaffold_11:220225-220769(-) (11)	NA	NA	NA	AT2G46150.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os07g34050.1	harpin-induced protein 1 domain containing protein	Medtr2g103800.1	"Harpin-induced 1, related "	GO:0009269|response to desiccation	NA	NA
PtpAffx.209684.1.S1_at	A	A1MS	POPTR_0011s00490	POPTR_0011s00490 (9)	scaffold_11:212336-212608(+) (11)	NA	NA	NA	AT2G33460.1	ROP-interactive CRIB motif-containing protein 1 	LOC_Os04g53580.1	"P21-Rho-binding domain containing protein, putative, expressed"	Medtr2g093180.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209685.1.S1_at	A	A1TS	POPTR_0011s00470	POPTR_0011s00470 (11)	scaffold_11:189153-189307(+) (11)	NA	Q9C7F5	Nuclear transport factor 2	AT1G11570.2	NTF2-like 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
PtpAffx.209687.1.S1_at	A	A1MS	POPTR_0011s00330	POPTR_0011s00330 (11)	scaffold_11:100815-101506(-) (11)	NA	Q195N6	"Pyruvate, phosphate dikinase regulatory protein, chloroplastic"	AT4G21210.1	PPDK regulatory protein 	LOC_Os07g34640.2	"pyruvate Pi dikinase regulatory protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209688.1.S1_at	A	A1TS	POPTR_0011s00300	POPTR_0011s00300 (11)	scaffold_11:81785-82204(+) (11)	NA	Q0HYB4	Sulfite reductase [NADPH] flavoprotein alpha-component	AT3G02280.1	Flavodoxin family protein 	LOC_Os01g53250.1	"NADPH reductase, putative, expressed"	Medtr7g121460.1	Flavoprotein pyridine nucleotide cytochrome reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209689.1.S1_at	A	A1TS	POPTR_0011s00290	POPTR_0011s00290 (11)	scaffold_11:79046-79280(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209690.1.S1_at	A	A1TS	POPTR_0011s00270	POPTR_0011s00270 (11)	scaffold_11:68712-69247(-) (11)	NA	NA	NA	AT4G05220.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os07g34720.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr7g146140.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.209693.1.S1_at	A	A1MS	POPTR_0017s09240	POPTR_0017s09240 (11)	scaffold_17:7873595-7873803(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35300.1	"TKL_IRAK_DUF26-lc.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_26.1	Tyrosine protein kinase AC235009.1 109110-106484 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209693.1.S1_s_at	A	A1TS	POPTR_0017s09240	POPTR_0017s09240 (11)	scaffold_17:7873240-7873742(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35300.1	"TKL_IRAK_DUF26-lc.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_26.1	Tyrosine protein kinase AC235009.1 109110-106484 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209696.1.S1_at	A	A1TS	POPTR_0011s04770	POPTR_0011s04770 (11)	scaffold_11:4741154-4741653(-) (11)	NA	Q92541	RNA polymerase-associated protein RTF1 homolog	AT1G61040.1	plus-3 domain-containing protein 	LOC_Os12g35030.1	"plus-3 domain containing protein, expressed"	Medtr7g117510.1	Plus-3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.209697.1.S1_at	A	A1TS	POPTR_0011s04760	POPTR_0011s04760 (11)	scaffold_11:4734201-4735105(+) (11)	NA	Q9FR99	1-aminocyclopropane-1-carboxylate oxidase	AT1G79760.1	downstream target of AGL15-4 	LOC_Os01g54090.1	expressed protein	Medtr8g015870.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209698.1.S1_at	A	A1TS	POPTR_0011s04750	POPTR_0011s04750 (11)	scaffold_11:4725486-4725854(-) (11)	NA	P0C8Q4	Uncharacterized protein At4g19900	AT1G61050.1	"alpha 1,4-glycosyltransferase family protein "	LOC_Os04g44740.1	"glycosyltransferase sugar-binding region containing DXD motif, putative, expressed"	Medtr2g014970.1	"Glycosyltransferase sugar-binding region containing DXD motif; Alpha 1,4-glycosyltransferase conserved region "	NA	GO:0008378|galactosyltransferase activity	GO:0005795|Golgi stack
PtpAffx.209699.1.S1_at	A	A1TS	POPTR_0011s04730	POPTR_0011s04730 (11)	scaffold_11:4700997-4701554(-) (11)	NA	O24463	Dof zinc finger protein PBF	AT5G60850.1	OBF binding protein 4 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g015060.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.209700.1.S1_at	A	A1TS	POPTR_0011s04690	POPTR_0011s04690 (11)	scaffold_11:4673566-4674326(+) (11)	NA	NA	NA	AT4G04980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 23100 Blast hits to 15699 proteins in 1063 species: Archae - 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants - 3181; Viruses - 958; Other Eukaryotes - 5007 (source: NCBI BLink). 	LOC_Os08g03560.2	"chloroplast unusual positioning protein, putative, expressed"	Medtr2g014710.1	"Phosphoinositide-binding clathrin adaptor, N-terminal; Wiscott-Aldrich syndrome, C-terminal, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209701.1.S1_at	A	A1TS	POPTR_0011s04680	POPTR_0011s04680 (11)	scaffold_11:4665792-4666182(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209702.1.S1_at	A	A1TS	POPTR_0011s04670	POPTR_0011s04670 (11)	scaffold_11:4664473-4665112(+) (11)	NA	NA	NA	AT1G61100.2	"disease resistance protein (TIR class), putative "	LOC_Os07g26440.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209703.1.S1_at	A	A1TS	POPTR_0011s04670	POPTR_0011s04670 (11)	scaffold_11:4660470-4661800(+) (11)	NA	NA	NA	AT1G61100.2	"disease resistance protein (TIR class), putative "	LOC_Os07g26440.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209704.1.S1_at	A	A1TS	POPTR_0011s04650	POPTR_0011s04650 (11)	scaffold_11:4627027-4627709(-) (11)	NA	Q9ZNU2	NAC domain-containing protein 18	AT1G61110.1	NAC domain containing protein 25 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.209705.1.S1_at	A	A1MS	POPTR_0011s04620	POPTR_0011s04620 (9)	scaffold_11:4570038-4570497(+) (9)	NA	Q9FIY7	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3	AT1G61140.3	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related 	LOC_Os01g57110.2	"SNF2 family N-terminal domain containing protein, expressed"	Medtr2g014500.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.209706.1.S1_at	A	A1TS	POPTR_0011s04600	POPTR_0011s04600 (11)	scaffold_11:4552961-4553505(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g014460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209707.1.S1_at	A	A1MS	POPTR_0011s04590	POPTR_0011s04590 (11)	scaffold_11:4545954-4546489(-) (11)	NA	Q0WW40	F-box/kelch-repeat protein At1g16250	AT1G16250.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g56160.1	"kelch repeat protein, putative"	Medtr2g014450.1	Kelch repeat type 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209708.1.S1_at	A	A1TS	POPTR_0011s04540	POPTR_0011s04540 (10)	scaffold_11:4510317-4512040(-) (10)	NA	Q6R2K3	Protein STRUBBELIG-RECEPTOR FAMILY 3	AT4G03390.1	STRUBBELIG-receptor family 3 	LOC_Os07g37810.1	"STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed"	Medtr2g014380.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.209709.1.S1_at	A	A1TS	POPTR_0011s04530	POPTR_0011s04530 (9)	scaffold_11:4491645-4493465(-) (11)	NA	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog 1	AT1G61210.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58130.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209710.1.S1_at	A	A1MS	POPTR_0011s04520	POPTR_0011s04520 (10)	scaffold_11:4485607-4486192(-) (10)	NA	NA	NA	AT1G61215.1	bromodomain 4 	NA	NA	Medtr2g014300.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209711.1.S1_at	A	A1TS	POPTR_0011s04510	POPTR_0011s04510 (9)	scaffold_11:4468648-4471283(-) (10)	NA	NA	NA	AT1G61240.4	Protein of unknown function (DUF707) 	LOC_Os07g37760.2	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g013740.2	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209712.1.S1_at	A	A1TS	POPTR_0011s04500	POPTR_0011s04500 (11)	scaffold_11:4465272-4465564(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209713.1.S1_at	A	A1TS	POPTR_0011s04430	POPTR_0011s04430 (11)	scaffold_11:4414261-4415489(+) (11)	NA	P24021	Nuclease S1	AT1G11190.1	bifunctional nuclease i 	LOC_Os04g54390.1	"nuclease PA3, putative, expressed"	Medtr2g014190.1	S1/P1 nuclease 	GO:0044265|cellular macromolecule catabolic process||GO:0006308|DNA catabolic process	GO:0003676|nucleic acid binding||GO:0004519|endonuclease activity	NA
PtpAffx.209714.1.S1_at	A	A1TS	POPTR_0011s04420	POPTR_0011s04420 (11)	scaffold_11:4412705-4413040(+) (11)	NA	P24021	Nuclease S1	AT4G21585.1	endonuclease 4 	LOC_Os01g03730.1	"nuclease PA3, putative, expressed"	Medtr4g125400.1	S1/P1 nuclease 	GO:0044265|cellular macromolecule catabolic process||GO:0006308|DNA catabolic process	GO:0003676|nucleic acid binding||GO:0004519|endonuclease activity	NA
PtpAffx.209715.1.S1_at	A	A1TS	POPTR_0011s04410	POPTR_0011s04410 (11)	scaffold_11:4404000-4405454(+) (11)	NA	Q9SCV4	Beta-galactosidase 8	AT2G28470.1	beta-galactosidase 8 	LOC_Os03g15020.1	"beta-galactosidase precursor, putative, expressed"	Medtr4g081500.1	"Rhodopsin-like GPCR superfamily; D-galactoside/L-rhamnose binding SUEL lectin; Glycoside hydrolase, family 35 "	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.209716.1.S1_at	A	A1TS	POPTR_0011s04390	POPTR_0011s04390 (9)	scaffold_11:4380896-4382049(-) (9)	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.209717.1.S1_at	A	A1MS	POPTR_0011s04370	POPTR_0011s04370 (10)	scaffold_11:4367135-4367893(+) (10)	NA	Q54Z08	Pre-mRNA-splicing factor SYF1	AT5G28740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g44970.1	"XPA-binding protein 2, putative, expressed"	Medtr2g014060.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209718.1.S1_at	A	A1MS	POPTR_0011s04370	POPTR_0011s04370 (11)	scaffold_11:4366308-4366683(+) (11)	NA	Q54Z08	Pre-mRNA-splicing factor SYF1	AT5G28740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g44970.1	"XPA-binding protein 2, putative, expressed"	Medtr2g014060.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209719.1.S1_at	A	A1TS	POPTR_0011s04350	POPTR_0011s04350 (11)	scaffold_11:4360259-4360822(+) (11)	NA	O64791	Syntaxin-124	AT1G61290.1	syntaxin of plants 124 	LOC_Os06g39050.1	"syntaxin, putative, expressed"	Medtr2g014030.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.209722.1.S1_at	A	A1TS	POPTR_0011s04290	POPTR_0011s04290 (11)	scaffold_11:4291356-4292733(-) (11)	NA	Q9C8H0	ABC transporter C family member 12	AT1G30410.1	multidrug resistance-associated protein 13 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.209723.1.S1_at	A	A1TS	POPTR_0011s04270	POPTR_0011s04270 (11)	scaffold_11:4279662-4280466(-) (11)	NA	O64787	Putative FBD-associated F-box protein At1g61330	AT1G61330.1	"FBD, F-box and Leucine Rich Repeat domains containing protein "	LOC_Os04g40370.3	"OsFBX142 - F-box domain containing protein, expressed"	Medtr7g047500.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209725.1.S1_s_at	A	A1TS	POPTR_0011s04240	POPTR_0011s04240 (11)	scaffold_11:4263667-4264083(-) (11)	NA	NA	NA	AT4G21500.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05018.1); Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	NA	NA	Medtr4g124990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209727.1.S1_at	A	A1TS	POPTR_0011s04180	POPTR_0011s04180 (11)	scaffold_11:4214825-4215167(+) (11)	NA	O04953	Putative pectinesterase 52	AT5G26810.1	Pectin lyase-like superfamily protein 	LOC_Os01g19440.1	"pectinesterase, putative"	Medtr5g095360.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209728.1.S1_at	A	A1MS	POPTR_0011s04130	POPTR_0011s04130 (11)	scaffold_11:4194924-4195122(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209729.1.S1_at	A	A1TS	POPTR_0011s04100	POPTR_0011s04100 (11)	scaffold_11:4154266-4155571(+) (11)	NA	Q7LBC6	Lysine-specific demethylase 3B	AT4G21430.1	"Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase "	LOC_Os02g58210.1	"jmjC domain containing protein, expressed"	Medtr4g124670.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC; Zinc finger, C2H2-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20973.1.A1_at	A	A1TS	POPTR_0001s28120	POPTR_0001s28120 (11)	scaffold_1:26887900-26889162(-) (11)	NA	Q5VYK3	Proteasome-associated protein ECM29 homolog	AT2G26780.1	ARM repeat superfamily protein 	LOC_Os11g04220.1	"HEAT repeat family protein, putative, expressed"	Medtr5g096070.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209731.1.S1_at	A	A1TS	POPTR_0011s04070	POPTR_0011s04070 (11)	scaffold_11:4125996-4126380(-) (11)	NA	NA	NA	AT4G05150.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os07g37040.1	"PB1 domain containing protein, expressed"	Medtr4g124660.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209732.1.S1_at	A	A1TS	POPTR_0011s04060	POPTR_0011s04060 (11)	scaffold_11:4109320-4110209(-) (11)	NA	Q9ZR04	Putative cyclin-D6-1	AT4G03270.1	Cyclin D6;1 	LOC_Os07g37010.1	"cyclin, putative, expressed"	Medtr2g103030.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209733.1.S1_at	A	A1TS	POPTR_0011s04050	POPTR_0011s04050 (11)	scaffold_11:4104112-4104658(-) (11)	NA	Q9FHI7	Probable disease resistance protein At5g45490	AT5G45490.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g58510.1	NB-ARC domain containing protein	Medtr3g030870.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.209733.1.S1_s_at	A	A1TS	POPTR_0011s04050	POPTR_0011s04050 (11)	scaffold_11:4104074-4104633(-) (11)	NA	Q9FHI7	Probable disease resistance protein At5g45490	AT5G45490.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g58510.1	NB-ARC domain containing protein	Medtr3g030870.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.209734.1.S1_at	A	A1TS	POPTR_0011s04040	POPTR_0011s04040 (11)	scaffold_11:4101665-4102100(+) (11)	NA	Q38834	Disease resistance RPP13-like protein 4	AT5G45500.2	RNI-like superfamily protein 	LOC_Os01g58520.1	"disease resistance protein, putative, expressed"	Medtr3g019380.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.209735.1.S1_at	A	A1TS	POPTR_0011s04030	POPTR_0011s04030 (11)	scaffold_11:4092165-4092937(+) (11)	NA	Q9ZR04	Putative cyclin-D6-1	AT4G03270.1	Cyclin D6;1 	LOC_Os08g32540.1	"cyclin, putative, expressed"	Medtr2g103030.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209736.1.S1_x_at	A	A1TS	POPTR_0011s04020	POPTR_0011s04020 (11)	scaffold_11:4074514-4081406(+) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT2G31180.1	myb domain protein 14 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr2g103070.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209737.1.S1_x_at	A	A1TS	POPTR_0011s04000	POPTR_0011s04000 (11)	scaffold_11:4058414-4059266(+) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT3G23250.1	myb domain protein 15 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr1g042840.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209739.1.S1_at	A	A1MS	POPTR_0011s03780	POPTR_0011s03780 (11)	scaffold_11:3846602-3847158(+) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os10g36310.1	OsFBX390 - F-box domain containing protein	Medtr5g021800.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209741.1.S1_x_at	A	A1TS	POPTR_0002s21030	POPTR_0002s21030 (11)	scaffold_2:17361812-17362187(+) (11)	NA	Q9LPZ3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410	AT1G11410.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124550.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.209742.1.S1_at	A	A1TS	POPTR_0011s03580	POPTR_0011s03580 (11)	scaffold_11:3651643-3652241(-) (11)	NA	O81902	U-box domain-containing protein 8	AT4G21350.1	plant U-box 8 	LOC_Os06g01304.1	"spotted leaf 11, putative, expressed"	Medtr2g011190.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.209743.1.S1_at	A	A1TS	POPTR_0011s03540	POPTR_0011s03540 (10)	scaffold_11:3608993-3609459(+) (11)	NA	NA	NA	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209744.1.S1_at	A	A1MS	POPTR_1313s00210	POPTR_1313s00210 (11)	scaffold_11:3591131-3591402(-) (11)//scaffold_1313:4967-5238(+) (11)	NA	Q9LK57	"Pentatricopeptide repeat-containing protein At3g13160, mitochondrial"	AT3G13160.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g57630.3	"pentatricopeptide containing protein, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209745.1.S1_at	A	A1TS	POPTR_0011s03490	POPTR_0011s03490 (11)	scaffold_11:3588820-3589416(+) (11)	NA	Q84UV0	"Linalool synthase, chloroplastic"	AT1G61680.1	terpene synthase 14 	LOC_Os02g02930.1	"terpene synthase, putative, expressed"	Medtr3g068760.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.209746.1.S1_at	A	A1TS	POPTR_0011s03480	POPTR_0011s03480 (11)	scaffold_11:3579432-3579570(+) (11)	NA	O13821	Vacuolar protein sorting-associated protein 27	AT1G61690.1	phosphoinositide binding 	LOC_Os03g46710.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209746.1.S1_s_at	A	A1TS	POPTR_0011s03480	POPTR_0011s03480 (11)	scaffold_11:3578995-3579442(+) (11)	NA	O13821	Vacuolar protein sorting-associated protein 27	AT1G61690.1	phosphoinositide binding 	LOC_Os03g46710.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209747.1.S1_at	A	A1TS	POPTR_0011s03470	POPTR_0011s03470 (11)	scaffold_11:3561510-3562295(+) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT3G22104.1	Phototropic-responsive NPH3 family protein 	LOC_Os07g36230.1	"BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g010960.1	NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.209748.1.S1_at	A	A1TS	POPTR_0011s03460	POPTR_0011s03460 (11)	scaffold_11:3558429-3558912(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209749.1.S1_at	A	A1TS	POPTR_0011s03440	POPTR_0011s03440 (11)	scaffold_11:3546488-3547262(+) (11)	NA	Q84LB2	"(E,E)-alpha-farnesene synthase"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr7g010000.1	Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.209750.1.S1_at	A	A1TS	POPTR_0011s03400	POPTR_0011s03400 (11)	scaffold_11:3519572-3519926(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os12g17480.1	"MLA12, putative"	Medtr3g092270.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209751.1.S1_at	A	A1TS	POPTR_0011s03380	POPTR_0011s03380 (11)	scaffold_11:3510427-3511372(-) (11)	NA	Q07970	Kinesin-1	AT4G21270.1	kinesin 1 	LOC_Os04g53760.2	"kinesin motor domain containing protein, putative, expressed"	Medtr2g010810.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.209752.1.S1_at	A	A1TS	POPTR_0011s03350	POPTR_0011s03350 (11)	scaffold_11:3502531-3502822(+) (11)	NA	NA	NA	AT1G61740.1	Sulfite exporter TauE/SafE family protein 	LOC_Os01g57710.1	"membrane protein, putative, expressed"	Medtr2g010790.1	Protein of unknown function DUF81 	NA	NA	GO:0016021|integral to membrane
PtpAffx.209753.1.S1_s_at	A	A1TS	POPTR_0011s03320	POPTR_0011s03320 (11)	scaffold_11:3467520-3468045(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35260.2	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC233661_21.1	Protein of unknown function DUF26 AC233661.2 113606-116020 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209754.1.S1_s_at	A	A2TS	POPTR_0011s03250	POPTR_0011s03250 (11)//POPTR_0011s03310 (11)	scaffold_11:3393389-3393683(-) (11)//scaffold_11:3462500-3462794(-) (11)	NA	Q9LV60	Cysteine-rich repeat secretory protein 55	AT5G48540.1	receptor-like protein kinase-related family protein 	LOC_Os03g16950.1	"cysteine-rich repeat secretory protein 55 precursor, putative, expressed"	Medtr2g010780.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209758.1.S1_at	A	A2TS	POPTR_0011s02230	POPTR_0011s08240 (11)//POPTR_0011s02230 (11)	scaffold_11:1976782-1977338(+) (11)//scaffold_11:9237237-9237793(-) (11)	NA	Q9M6E8	"9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic"	AT1G30100.1	nine-cis-epoxycarotenoid dioxygenase 5 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209759.1.S1_x_at	A	A1TS	POPTR_0011s02270	POPTR_0011s02270 (11)	scaffold_11:2070694-2071189(-) (11)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209760.1.S1_at	A	A1TS	POPTR_0011s02280	POPTR_0011s02280 (10)	scaffold_11:2082262-2083929(+) (10)	NA	Q9ZVH3	Origin recognition complex subunit 6	AT1G26840.1	origin recognition complex protein 6 	LOC_Os07g43540.1	"ORC6 - Putative origin recognition complex subunit 6, expressed"	Medtr5g041100.1	Origin recognition complex subunit 6 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005664|nuclear origin of replication recognition complex
PtpAffx.209761.1.S1_at	A	A1TS	POPTR_0011s02290	POPTR_0011s02290 (11)	scaffold_11:2092883-2092950(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209761.1.S1_s_at	A	A1MS	POPTR_0011s02290	POPTR_0011s02290 (11)	scaffold_11:2091117-2091371(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209762.1.S1_at	A	A1TS	POPTR_0011s02300	POPTR_0011s02300 (11)	scaffold_11:2093841-2094210(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g024400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209763.1.S1_at	A	A1TS	POPTR_0011s02310	POPTR_0011s02310 (11)	scaffold_11:2097700-2098105(-) (11)	NA	NA	NA	AT4G20300.1	Protein of unknown function (DUF1639) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209764.1.S1_at	A	A1TS	POPTR_0011s02320	POPTR_0011s02320 (11)	scaffold_11:2103058-2104746(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209765.1.S1_at	A	A1TS	POPTR_0011s02330	POPTR_0011s02330 (11)	scaffold_11:2109631-2111817(+) (11)	NA	Q9SEL7	"Protease Do-like 5, chloroplastic"	AT4G18370.1	DEGP protease 5 	LOC_Os12g42210.1	"OsDegp15 - Putative Deg protease homologue, expressed"	Medtr2g024380.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.209767.1.S1_at	A	A1TS	POPTR_0011s02400	POPTR_0011s02400 (9)	scaffold_11:2290401-2290863(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209768.1.S1_at	A	A1TS	POPTR_0011s02420	POPTR_0011s02420 (11)	scaffold_11:2311204-2312403(-) (11)	POPTR_0004s06470 (6)	P58223	KH domain-containing protein At4g18375	AT5G46190.1	RNA-binding KH domain-containing protein 	LOC_Os08g10030.2	"KH domain-containing protein, putative, expressed"	Medtr2g024360.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.209773.1.S1_at	A	A1TS	POPTR_0011s02480	POPTR_0011s02480 (11)	scaffold_11:2398853-2399192(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g022230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209774.1.S1_at	A	A1TS	POPTR_0011s02490	POPTR_0011s02490 (11)	scaffold_11:2399740-2400650(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209775.1.S1_at	A	A1TS	POPTR_0011s02540	POPTR_0011s02540 (11)	scaffold_11:2466386-2466619(+) (11)	NA	NA	NA	AT1G30280.1	Chaperone DnaJ-domain superfamily protein 	NA	NA	Medtr2g056730.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209776.1.S1_at	A	A1TS	POPTR_0011s02540	POPTR_0011s02540 (11)	scaffold_11:2469627-2470128(+) (11)	NA	NA	NA	AT1G30280.1	Chaperone DnaJ-domain superfamily protein 	NA	NA	Medtr2g056730.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209777.1.S1_at	A	A1TS	POPTR_0011s02570	POPTR_0011s02570 (11)	scaffold_11:2483749-2484585(-) (11)	NA	NA	NA	AT1G17210.1	IAP-like protein 1 	LOC_Os03g57160.1	"zinc ion binding protein, putative, expressed"	Medtr2g077240.1	"Zinc finger, C3HC-like "	NA	GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.209777.1.S1_s_at	A	A1TS	POPTR_0011s02570	POPTR_0011s02570 (11)	scaffold_11:2483546-2485408(-) (11)	NA	NA	NA	AT1G17210.1	IAP-like protein 1 	LOC_Os03g57160.1	"zinc ion binding protein, putative, expressed"	Medtr2g077240.1	"Zinc finger, C3HC-like "	NA	GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.209778.1.S1_x_at	A	A1TS	POPTR_0011s02610	POPTR_0011s02610 (11)	scaffold_11:2512851-2513662(-) (11)	NA	P51373	Uncharacterized protein ycf23	NA	NA	LOC_Os05g49060.1	"uncharacterized protein ycf23, putative, expressed"	Medtr4g165580.1	Ribulose-phosphate binding barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209779.1.S1_at	A	A1TS	POPTR_0011s02620	POPTR_0011s02620 (11)	scaffold_11:2523176-2523639(-) (11)	NA	NA	NA	AT1G50720.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209780.1.S1_at	A	A1TS	POPTR_0011s02630	POPTR_0011s02630 (11)	scaffold_11:2541472-2541694(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209780.1.S1_x_at	A	A1TS	POPTR_0011s02630	POPTR_0011s02630 (11)	scaffold_11:2541419-2541692(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209782.1.S1_at	A	A1TS	POPTR_0011s02650	POPTR_0011s02650 (11)	scaffold_11:2562963-2566015(+) (11)	NA	O49730	Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog	AT4G18270.1	translocase 11 	LOC_Os01g11260.1	"phospho-N-acetylmuramoyl-pentapeptide-transferase, putative, expressed"	Medtr2g024820.1	"Glycosyl transferase, family 4 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209783.1.S1_at	A	A1TS	POPTR_0011s02670	POPTR_0011s02670 (11)	scaffold_11:2590594-2591627(+) (11)	NA	NA	NA	AT4G18260.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os05g49040.1	expressed protein	Medtr4g165820.1	Cytochrome b561 / ferric reductase transmembrane 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209785.1.S1_at	A	A1TS	POPTR_0011s02750	POPTR_0011s02750 (11)	scaffold_11:2689868-2690197(+) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209786.1.S1_at	A	A1TS	POPTR_0011s02780	POPTR_0011s02780 (11)	scaffold_11:2708618-2710582(-) (11)	NA	Q96PB1	CAS1 domain-containing protein 1	AT2G34410.2	O-acetyltransferase family protein 	LOC_Os01g44040.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209787.1.S1_at	A	A1TS	POPTR_0011s02810	POPTR_0011s02810 (11)	scaffold_11:2769000-2772312(-) (11)	NA	Q9SVV6	Probable calcium-activated outward-rectifying potassium channel 6	AT4G18160.1	Ca2+ activated outward rectifying K+ channel 6 	LOC_Os09g12790.1	"potassium channel protein, putative, expressed"	Medtr7g134030.1	Ion transport 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209789.1.S1_at	A	A1TS	POPTR_0011s02820	POPTR_0011s02820 (11)	scaffold_11:2781086-2781542(+) (11)	NA	NA	NA	AT1G29790.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g42770.1	"a_IG002N01.7, putative"	Medtr5g085490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209790.1.S1_at	A	A1TS	POPTR_0011s02860	POPTR_0011s02860 (11)	scaffold_11:2814569-2819255(+) (11)	NA	P42784	Carboxyl-terminal-processing protease	AT5G46390.2	Peptidase S41 family protein 	LOC_Os01g47450.1	"OsCttP1 - Putative C-terminal processing peptidase homologue, expressed"	Medtr4g136660.1	"Peptidase S41A, C-terminal protease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0005515|protein binding||GO:0008236|serine-type peptidase activity	NA
PtpAffx.209791.1.S1_x_at	A	A1TS	POPTR_0011s02890	POPTR_0011s02890 (11)	scaffold_11:2835877-2837549(-) (11)	NA	Q54GB2	CTD small phosphatase-like protein 2	AT5G46410.2	SCP1-like small phosphatase 4 	LOC_Os01g43870.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g056340.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209792.1.S1_at	A	A1TS	POPTR_0011s02910	POPTR_0011s02910 (11)	scaffold_11:2855811-2856325(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g086540.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209793.1.S1_at	A	A1TS	POPTR_0011s02920	POPTR_0011s02920 (11)	scaffold_11:2858880-2861921(-) (11)	NA	Q9FT92	Uncharacterized protein At5g08430	AT5G63700.1	zinc ion binding;DNA binding 	LOC_Os01g66140.1	"plus-3 domain containing protein, putative, expressed"	Medtr3g086490.1	"SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.209794.1.S1_at	A	A1TS	POPTR_0011s02930	POPTR_0011s02930 (11)	scaffold_11:2885807-2886234(+) (11)	NA	Q7ZV68	Vacuolar protein sorting-associated protein 29	AT3G47810.3	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os02g16550.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr3g109790.1	Protein of unknown function UPF0025; Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.209796.1.S1_at	A	A1TS	POPTR_0011s03040	POPTR_0011s03040 (11)	scaffold_11:3028161-3029216(-) (11)	NA	Q8L6Z7	Exonuclease 1	AT1G29630.2	5'-3' exonuclease family protein 	LOC_Os01g56940.1	"flap endonuclease, putative, expressed"	Medtr4g136470.1	"Helix-hairpin-helix motif, class 2 "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0004518|nuclease activity	NA
PtpAffx.209798.1.S1_at	A	A1TS	POPTR_0011s03090	POPTR_0011s03090 (11)	scaffold_11:3139226-3139838(+) (11)	NA	NA	NA	AT5G45660.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g52760.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209799.1.S1_s_at	A	A1TS	POPTR_0011s03120	POPTR_0011s03120 (11)	scaffold_11:3187379-3187723(+) (11)	NA	NA	NA	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209800.1.S1_at	A	A1TS	POPTR_0011s03130	POPTR_0011s03130 (11)	scaffold_11:3189551-3190138(+) (11)	NA	Q9C7N5	GDSL esterase/lipase At1g29660	AT1G29660.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136390.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.209802.1.S1_at	A	A1TS	POPTR_0011s03170	POPTR_0011s03170 (11)	scaffold_11:3231663-3232641(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209805.1.S1_at	A	A1TS	POPTR_0011s08660	POPTR_0011s08660 (11)	scaffold_11:10604571-10607854(-) (11)	NA	NA	NA	AT1G55930.1	CBS domain-containing protein / transporter associated domain-containing protein 	LOC_Os03g39640.1	"CBS domain containing protein, expressed"	Medtr5g102230.1	CBS; Transporter-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209806.1.S1_at	A	A1TS	POPTR_0011s08690	POPTR_0011s08690 (11)	scaffold_11:10616044-10616363(-) (11)	NA	Q7G188	Fimbrin-1	AT4G26700.2	fimbrin 1 	LOC_Os02g48740.1	"fimbrin-like protein 2, putative, expressed"	Medtr5g101620.1	"Actin-binding, actinin-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209807.1.S1_at	A	A1TS	POPTR_0011s08700	POPTR_0011s08700 (11)	scaffold_11:10702731-10703034(-) (11)	NA	Q6ATG6	Ribonuclease 3-like protein 2	AT3G20420.1	RNAse THREE-like protein 2 	LOC_Os05g18850.1	"endoribonuclease Dicer, putative, expressed"	Medtr3g142860.1	"Ribonuclease III, bacterial "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.209808.1.S1_at	A	A2TS	POPTR_0011s08730	POPTR_0011s08730 (11)//POPTR_0040s00200 (11)	scaffold_11:10816526-10817050(-) (11)//scaffold_40:133733-134257(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g34790.1	expressed protein	Medtr5g100830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209811.1.S1_at	A	A1TS	POPTR_0011s08960	POPTR_0011s08960 (11)	scaffold_11:11009637-11010715(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209812.1.S1_at	A	A1TS	POPTR_0011s08970	POPTR_0011s08970 (11)	scaffold_11:11013169-11014060(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209814.1.S1_at	A	A1TS	POPTR_0011s08990	POPTR_0011s08990 (11)	scaffold_11:11039251-11039780(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209815.1.S1_at	A	A1TS	POPTR_0011s09000	POPTR_0011s09000 (11)	scaffold_11:11043026-11043823(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209816.1.S1_at	A	A1TS	POPTR_0011s09020	POPTR_0011s09020 (11)	scaffold_11:11063329-11064585(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209817.1.S1_at	A	A1TS	POPTR_0011s09040	POPTR_0011s09040 (11)	scaffold_11:11110339-11110770(+) (11)	NA	Q9C9Y8	Probable inactive receptor kinase At3g08680	AT3G08680.2	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21510.3	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr5g101850.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.209819.1.S1_at	A	A1TS	POPTR_0011s09060	POPTR_0011s09060 (11)	scaffold_11:11175196-11175366(+) (11)	NA	NA	NA	AT5G55540.1	tornado 1 	NA	NA	Medtr3g076970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209820.1.S1_at	A	A1TS	POPTR_0011s09070	POPTR_0011s09070 (11)	scaffold_11:11187707-11188349(+) (11)	NA	NA	NA	AT5G55540.1	tornado 1 	LOC_Os03g53990.1	expressed protein	Medtr3g076970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209822.1.S1_at	A	A1TS	POPTR_0011s09140	POPTR_0011s09140 (11)	scaffold_11:11306876-11307719(-) (11)	NA	NA	NA	AT5G42570.1	B-cell receptor-associated 31-like 	LOC_Os05g19040.1	"prefoldin, putative, expressed"	Medtr4g064750.1	B-cell receptor-associated 31-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209823.1.S1_s_at	A	A1TS	POPTR_0011s09160	POPTR_0011s09160 (11)	scaffold_11:11311038-11312164(-) (11)	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.1	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.2	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr5g100690.1	"Dihydrolipoamide acetyltransferase, long form "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.209824.1.S1_at	A	A1TS	POPTR_0011s09170	POPTR_0011s09170 (11)	scaffold_11:11330999-11331387(-) (11)	NA	Q642R9	Rab3 GTPase-activating protein catalytic subunit	AT5G55060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). 	LOC_Os07g32670.1	expressed protein	Medtr5g100640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209824.1.S1_s_at	A	A1TS	POPTR_0011s09170	POPTR_0011s09170 (11)	scaffold_11:11329453-11331007(-) (11)	NA	Q642R9	Rab3 GTPase-activating protein catalytic subunit	AT5G55060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). 	LOC_Os07g32670.1	expressed protein	Medtr5g100640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209825.1.S1_at	A	A1TS	POPTR_0011s09170	POPTR_0011s09170 (11)	scaffold_11:11334419-11334609(-) (11)	NA	Q642R9	Rab3 GTPase-activating protein catalytic subunit	AT5G55060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). 	LOC_Os07g32670.1	expressed protein	Medtr5g100640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209826.1.S1_at	A	A1TS	POPTR_0011s09190	POPTR_0011s09190 (10)	scaffold_11:11342200-11343608(-) (10)	NA	O43196	MutS protein homolog 5	AT3G20475.1	MUTS-homologue 5 	LOC_Os05g41880.1	"mutS domain V family protein, expressed"	Medtr5g100500.1	MutS III 	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.209827.1.S1_at	A	A1TS	POPTR_0011s09190	POPTR_0011s09190 (11)	scaffold_11:11345784-11347716(-) (11)	NA	O43196	MutS protein homolog 5	AT3G20475.1	MUTS-homologue 5 	LOC_Os05g41880.1	"mutS domain V family protein, expressed"	Medtr5g100500.1	MutS III 	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.209828.1.S1_s_at	A	A1TS	POPTR_0011s09210	POPTR_0011s09210 (11)	scaffold_11:11401692-11402119(-) (11)	NA	A9LNK9	Cleavage and polyadenylation specificity factor CPSF30	AT1G30460.1	cleavage and polyadenylation specificity factor 30 	LOC_Os06g46400.1	"ATCPSF30/CPSF30, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209829.1.S1_at	A	A1TS	POPTR_0011s09230	POPTR_0011s09230 (11)	scaffold_11:11425356-11426097(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209830.1.S1_at	A	A1TS	POPTR_0011s09330	POPTR_0011s09330 (11)	scaffold_11:11584519-11584809(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209831.1.S1_at	A	A1MS	POPTR_0011s09410	POPTR_0011s09410 (11)	scaffold_11:11651311-11651786(-) (11)	NA	Q6QNU4	DNA damage-binding protein 1	AT4G05420.2	damaged DNA binding protein 1A 	LOC_Os05g51480.1	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr4g137930.1	"CPSF A subunit, C-terminal; WD40-like "	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.209832.1.S1_s_at	A	A1TS	POPTR_0011s09430	POPTR_0011s09430 (11)	scaffold_11:11669843-11670366(+) (11)	NA	NA	NA	AT4G03620.1	myosin heavy chain-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209834.1.S1_at	A	A1TS	POPTR_0011s09440	POPTR_0011s09440 (11)	scaffold_11:11693403-11695275(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209836.1.S1_at	A	A1MS	POPTR_0011s09460	POPTR_0011s09460 (9)	scaffold_11:11730263-11730348(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209836.1.S1_s_at	A	A1TS	POPTR_0011s09460	POPTR_0011s09460 (11)	scaffold_11:11724799-11729651(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209838.1.S1_at	A	A1TS	POPTR_0011s09540	POPTR_0011s09540 (11)	scaffold_11:11856357-11857969(-) (11)	NA	P38838	DNA damage response protein WSS1	AT1G55915.1	zinc ion binding 	LOC_Os06g09170.2	"zinc ion binding protein, putative, expressed"	Medtr4g028570.1	PUG 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.209839.1.S1_at	A	A1TS	POPTR_0011s09550	POPTR_0011s09550 (10)	scaffold_11:11875338-11875372(+) (10)	NA	Q8VYE2	Mitochondrial import inner membrane translocase subunit TIM50	AT1G55900.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g43770.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g103110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209839.1.S1_s_at	A	A1TS	POPTR_0011s09550	POPTR_0011s09550 (11)	scaffold_11:11874350-11874792(+) (11)	NA	Q8VYE2	Mitochondrial import inner membrane translocase subunit TIM50	AT1G55900.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g43770.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g103110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209840.1.S1_at	A	A1TS	POPTR_0011s09580	POPTR_0011s09580 (11)	scaffold_11:11910045-11910417(-) (11)	NA	Q93Z25	Probable pectate lyase 22	AT5G63180.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209840.1.S1_s_at	A	A1TS	POPTR_0011s09580	POPTR_0011s09580 (11)	scaffold_11:11910432-11910888(-) (11)	NA	Q93Z25	Probable pectate lyase 22	AT5G63180.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209840.1.S1_x_at	A	A1TS	POPTR_0011s09580	POPTR_0011s09580 (11)	scaffold_11:11909870-11910885(-) (11)	NA	Q93Z25	Probable pectate lyase 22	AT5G63180.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209841.1.S1_at	A	A1TS	POPTR_0011s09600	POPTR_0011s09600 (11)	scaffold_11:11945171-11945963(+) (11)	NA	NA	NA	AT5G55820.1	"CONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209842.1.S1_at	A	A1TS	POPTR_0011s09620	POPTR_0011s09620 (11)	scaffold_11:11997554-11997989(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209844.1.S1_a_at	A	A1TS	POPTR_0011s09640	POPTR_0011s09640 (11)	scaffold_11:12031849-12032197(+) (11)	NA	Q8GY23	E3 ubiquitin-protein ligase UPL1	AT1G55860.2	ubiquitin-protein ligase 1 	LOC_Os09g07900.1	"ubiquitin-protein ligase 1, putative, expressed"	Medtr5g075640.1	"HECT; Ubiquitin interacting motif; UBA-like; DUF913, E3 ubiquitin ligase TOM1; "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.209845.1.S1_at	A	A1TA	POPTR_0011s09650	POPTR_0011s09650 (10)	scaffold_11:12045713-12046165(-) (10)	NA	NA	NA	AT5G55850.3	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209847.1.S1_s_at	A	A1TS	POPTR_0011s09750	POPTR_0011s09750 (11)	scaffold_11:12149788-12149954(-) (11)	NA	Q9FPS9	Ubiquitin carboxyl-terminal hydrolase 15	AT1G17110.1	ubiquitin-specific protease 15 	LOC_Os02g14730.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.209851.1.S1_at	A	A1TS	POPTR_0011s09760	POPTR_0011s09760 (11)	scaffold_11:12182204-12183000(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209852.1.S1_at	A	A1TS	POPTR_0011s09770	POPTR_0011s09770 (11)	scaffold_11:12195197-12195977(+) (11)	NA	Q9SQ80	Gibberellin 2-beta-dioxygenase 1	AT1G78440.1	Arabidopsis thaliana gibberellin 2-oxidase 1 	LOC_Os01g55240.1	"gibberellin 2-beta-dioxygenase, putative, expressed"	Medtr2g024600.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.209853.1.S1_at	A	A1TS	POPTR_0011s09780	POPTR_0011s09780 (11)	scaffold_11:12212812-12213292(-) (11)	NA	Q9NXF1	Testis-expressed sequence 10 protein	AT5G06350.1	ARM repeat superfamily protein 	LOC_Os04g39220.1	expressed protein	Medtr5g027520.1	"Rad51, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209854.1.S1_at	A	A1TS	POPTR_0011s09810	POPTR_0011s09810 (11)	scaffold_11:12256222-12256522(+) (11)	NA	NA	NA	AT1G17147.1	VQ motif-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209855.1.S1_at	A	A1TS	POPTR_0011s09820	POPTR_0011s09820 (11)	scaffold_11:12270051-12274294(+) (11)	NA	Q759M1	Protein SIP5	AT1G78420.2	RING/U-box superfamily protein 	LOC_Os02g14720.1	expressed protein	Medtr7g032000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209856.1.S1_at	A	A1MS	POPTR_0011s09850	POPTR_0011s09850 (9)	scaffold_11:12290043-12291491(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209857.1.S1_at	A	A1TS	POPTR_0011s09870	POPTR_0011s09870 (11)	scaffold_11:12321138-12321435(-) (11)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G06230.3	global transcription factor group E4 	LOC_Os01g11580.1	"bromodomain containing protein, expressed"	Medtr4g109460.1	Bromodomain; Protein of unknown function GLTT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209858.1.S1_s_at	A	A1TS	POPTR_0011s09890	POPTR_0011s09890 (11)	scaffold_11:12332242-12332871(-) (11)	NA	Q8LPR5	Transcription factor TCP4	AT3G15030.3	TCP family transcription factor 4 	LOC_Os01g11550.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209859.1.S1_at	A	A1MS	POPTR_0011s09900	POPTR_0011s09900 (9)	scaffold_11:12341161-12341794(+) (9)	NA	P49540	Uncharacterized protein ycf45	AT1G73170.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g06190.1	"uncharacterized protein ycf45, putative, expressed"	AC233660_32.1	"AAA ATPase, central region AC233660.2 122587-125547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209860.1.S1_at	A	A1TS	POPTR_0011s09920	POPTR_0011s09920 (11)	scaffold_11:12357265-12357312(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209860.1.S1_s_at	A	A1TS	POPTR_0011s09920	POPTR_0011s09920 (11)	scaffold_11:12357321-12357455(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209861.1.S1_at	A	A1TS	POPTR_0011s09930	POPTR_0011s09930 (11)	scaffold_11:12366804-12367002(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209862.1.S1_at	A	A1TS	POPTR_0011s09940	POPTR_0011s09940 (11)	scaffold_11:12382348-12382868(-) (11)	NA	NA	NA	AT1G73160.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g46430.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr8g086410.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.209865.1.S1_at	A	A1TS	POPTR_0011s09990	POPTR_0011s09990 (11)	scaffold_11:12439129-12439678(+) (11)	POPTR_0174s00210 (6)	NA	NA	AT3G15095.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9762 Blast hits to 6439 proteins in 764 species: Archae - 77; Bacteria - 1339; Metazoa - 3211; Fungi - 718; Plants - 437; Viruses - 131; Other Eukaryotes - 3849 (source: NCBI BLink). 	LOC_Os06g24540.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209866.1.S1_at	A	A1TS	POPTR_0011s10000	POPTR_0011s10000 (11)	scaffold_11:12449079-12450530(-) (11)	POPTR_0174s00200 (6)	NA	NA	AT3G15110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3082 (InterPro:IPR021434); Has 77 Blast hits to 77 proteins in 38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g20490.1	expressed protein	Medtr6g035770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209867.1.S1_at	A	A1TS	POPTR_0011s10010	POPTR_0011s10010 (11)	scaffold_11:12469142-12469480(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G54010.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g26950.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr2g018360.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209868.1.S1_at	A	A1TS	POPTR_0011s10030	POPTR_0011s10030 (11)	scaffold_11:12495072-12495584(-) (11)	NA	NA	NA	AT4G05400.2	copper ion binding 	LOC_Os01g32790.1	expressed protein	AC233685_38.1	hypothetical protein AC233685.2 165811-168031 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209869.1.S1_s_at	A	A1TS	POPTR_0011s06510	POPTR_0011s06510 (11)	scaffold_11:6985958-6986355(+) (11)//scaffold_11:6996123-6996506(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209870.1.S1_at	A	A1TS	POPTR_0011s06600	POPTR_0011s06600 (11)	scaffold_11:7157631-7158495(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.1	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr4g136230.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209872.1.S1_s_at	A	A11TS	POPTR_0011s03200	POPTR_0011s06600 (11)//POPTR_0011s06130 (11)//POPTR_0011s06540 (11)//POPTR_0011s06490 (11)//POPTR_0011s06340 (11)//POPTR_0011s06475 (11)//POPTR_0011s06680 (11)//POPTR_0011s06460 (11)//POPTR_0011s06120 (11)//POPTR_0011s06580 (11)//POPTR_0011s03200 (11)	scaffold_11:3325831-3325876(-) (11)//scaffold_11:6179009-6179054(-) (11)//scaffold_11:6210197-6210242(-) (11)//scaffold_11:6557165-6557210(-) (11)//scaffold_11:6704811-6704856(-) (11)//scaffold_11:6848951-6848996(-) (11)//scaffold_11:6911848-6911893(-) (11)//scaffold_11:6963050-6963095(-) (11)//scaffold_11:7007302-7007347(-) (11)//scaffold_11:7104863-7104908(-) (11)//scaffold_11:7158380-7158425(-) (11)//scaffold_11:7287403-7287448(-) (11)	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.209872.1.S1_x_at	A	A1TS	POPTR_0011s06680	POPTR_0011s06680 (11)	scaffold_11:7287117-7287706(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.1	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr4g136230.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209874.1.S1_at	A	A1TS	POPTR_0011s06670	POPTR_0011s06670 (11)	scaffold_11:7262681-7264028(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.209875.1.S1_at	A	A1TS	POPTR_0011s06210	POPTR_0011s06210 (9)	scaffold_11:6293573-6294166(-) (10)	NA	NA	NA	AT3G54070.1	Ankyrin repeat family protein 	NA	NA	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209877.1.S1_s_at	A	A2TS	POPTR_0011s06710	POPTR_0011s06710 (11)//POPTR_0122s00210 (11)	scaffold_11:7360324-7360364(-) (11)//scaffold_122:70174-70214(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.1	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr4g136230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209878.1.S1_at	A	A1TS	POPTR_0011s06780	POPTR_0011s06780 (11)	scaffold_11:7461146-7461439(+) (11)	NA	Q9PTJ6	CTD small phosphatase-like protein	AT5G45700.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g11570.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g021560.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209879.1.S1_at	A	A1TS	POPTR_0011s06790	POPTR_0011s06790 (11)	scaffold_11:7467325-7469592(+) (11)	NA	Q9URW6	SH3 domain-containing protein PJ696.02	AT1G29800.2	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os02g13890.1	"FYVE zinc finger domain containing protein, expressed"	Medtr2g021650.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209881.1.S1_at	A	A1TS	POPTR_0011s06840	POPTR_0011s06840 (11)	scaffold_11:7527177-7527629(-) (11)	NA	Q9C7R6	U-box domain-containing protein 17	AT1G29340.1	plant U-box 17 	LOC_Os02g13960.1	"spotted leaf 11, putative, expressed"	Medtr2g021720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.209882.1.S1_at	A	A1TS	POPTR_0011s06860	POPTR_0011s06860 (11)	scaffold_11:7543601-7545394(-) (11)	NA	Q89A95	DNA polymerase III subunit gamma	AT4G18820.1	AAA-type ATPase family protein 	LOC_Os01g53070.1	"ATP binding protein, putative, expressed"	Medtr2g021690.1	"AAA ATPase; DNA polymerase III clamp loader subunit, C-terminal "	NA	GO:0005524|ATP binding	NA
PtpAffx.209883.1.S1_at	A	A1TS	POPTR_0011s06870	POPTR_0011s06870 (11)	scaffold_11:7571793-7573579(+) (11)	NA	P35402	ER lumen protein retaining receptor	AT1G29330.1	ER lumen protein retaining receptor family protein 	LOC_Os05g45310.1	"ER lumen protein retaining receptor, putative, expressed"	Medtr4g135750.1	ER lumen protein retaining receptor 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
PtpAffx.209886.1.S1_at	A	A1TS	POPTR_0011s06940	POPTR_0011s06940 (11)	scaffold_11:7666063-7666490(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g52370.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209886.1.S1_x_at	A	A1TS	POPTR_0011s06940	POPTR_0011s06940 (11)	scaffold_11:7666063-7666566(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g52370.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209887.1.S1_x_at	A	A1TS	POPTR_0011s06960	POPTR_0011s06960 (9)	scaffold_11:7701819-7702131(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr4g135600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209888.1.S1_at	A	A1TS	POPTR_0011s07050	POPTR_0011s07050 (11)	scaffold_11:7806057-7806569(+) (11)	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT4G18760.1	receptor like protein 51 	LOC_Os01g54630.1	"leucine rich repeat family protein, putative, expressed"	Medtr4g134980.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.209889.1.S1_at	A	A1TS	POPTR_0011s07060	POPTR_0011s07060 (11)	scaffold_11:7821405-7822092(-) (11)	NA	Q9SN39	"Pentatricopeptide repeat-containing protein At4g18750, chloroplastic"	AT4G18750.1	Pentatricopeptide repeat (PPR) superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209890.1.S1_at	A	A1TS	POPTR_0011s07110	POPTR_0011s07110 (11)	scaffold_11:7847575-7847775(-) (11)	NA	NA	NA	AT2G34200.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g53130.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g134950.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209891.1.S1_at	A	A1TS	POPTR_0011s07140	POPTR_0011s07140 (10)	scaffold_11:7895010-7895702(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g46980.1	"receptor-like protein kinase 2 precursor, putative"	AC233576_1.1	Protein kinase; AC233576.2 1048-3881 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.209893.1.S1_at	A	A1TS	POPTR_0011s07150	POPTR_0011s07150 (11)	scaffold_11:7904640-7904859(-) (11)	NA	Q91DM0	Genome polyprotein	AT1G37113.1	unknown protein; LOCATED IN: chloroplast; Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 14; Viruses - 6; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g109650.1	hypothetical protein 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.209893.1.S1_x_at	A	A1TS	POPTR_0011s07150	POPTR_0011s07150 (11)	scaffold_11:7904640-7905126(-) (11)	NA	Q91DM0	Genome polyprotein	AT1G37113.1	unknown protein; LOCATED IN: chloroplast; Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 14; Viruses - 6; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g109650.1	hypothetical protein 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.209894.1.S1_at	A	A1TS	POPTR_0011s07190	POPTR_0011s07190 (11)	scaffold_11:7948951-7950003(-) (11)	NA	Q10S58	Probable serine acetyltransferase 2	AT2G17640.1	Trimeric LpxA-like enzymes superfamily protein 	LOC_Os03g04140.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g023630.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209895.1.S1_at	A	A1TS	POPTR_0011s07200	POPTR_0011s07200 (11)	scaffold_11:7962938-7963281(-) (11)	NA	C0LGK9	Probable LRR receptor-like serine/threonine-protein kinase At2g24230	AT5G45800.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g14480.1	"receptor-like kinase, putative, expressed"	Medtr4g134880.1	Tyrosine protein kinase; Ribosomal protein S2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.209896.1.S1_at	A	A1TS	POPTR_0011s07240	POPTR_0011s07240 (11)	scaffold_11:7992087-7992502(-) (11)	NA	Q9FJ54	CBL-interacting serine/threonine-protein kinase 20	AT5G45820.1	CBL-interacting protein kinase 20 	LOC_Os01g10890.1	"CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209897.1.S1_at	A	A1TS	POPTR_0011s07270	POPTR_0011s07270 (11)	scaffold_11:8042485-8043237(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G38300.1	myb-like HTH transcriptional regulator family protein 	LOC_Os06g35140.1	"MYB family transcription factor, putative, expressed"	Medtr4g134780.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209899.1.S1_at	A	A1TS	POPTR_0011s07340	POPTR_0011s07340 (11)	scaffold_11:8128269-8128693(+) (11)	NA	NA	NA	AT1G29195.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g55370.1	expressed protein	Medtr3g033710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20990.1.S1_s_at	A	A1TS	POPTR_0010s25130	POPTR_0010s25130 (11)	scaffold_10:20973466-20974164(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.1	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.209901.1.S1_at	A	A1TS	POPTR_0011s07360	POPTR_0011s07360 (11)	scaffold_11:8192684-8192881(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209902.1.S1_s_at	A	A1TS	POPTR_0011s07381	POPTR_0011s07381 (11)	scaffold_11:8246259-8247997(+) (11)	NA	Q9LP46	Protein SCAR3	AT1G29170.3	SCAR family protein 	LOC_Os01g11040.1	"SCAR-like protein 2, putative, expressed"	Medtr4g134650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209903.1.S1_at	A	A1TS	POPTR_0011s07390	POPTR_0011s07390 (11)	scaffold_11:8250645-8251582(-) (11)	NA	Q9M352	60S ribosomal protein L36-2	AT3G53740.4	Ribosomal protein L36e family protein 	LOC_Os05g38520.4	"60S ribosomal protein L36-2, putative, expressed"	Medtr1g126960.2	Ribosomal protein L36E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.209904.1.S1_at	A	A1TS	POPTR_0011s07410	POPTR_0011s07410 (11)	scaffold_11:8270674-8271333(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209905.1.S1_at	A	A1TS	POPTR_0011s07430	POPTR_0011s07430 (11)	scaffold_11:8288180-8289171(-) (11)	NA	NA	NA	AT1G06330.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g55320.1	heavy metal-associated domain containing protein	Medtr4g140470.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.209906.1.S1_at	A	A1TS	POPTR_0011s07440	POPTR_0011s07440 (11)	scaffold_11:8300925-8301089(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.209906.1.S1_x_at	A	A1TS	POPTR_0011s07440	POPTR_0011s07440 (10)	scaffold_11:8300925-8301124(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.209907.1.S1_at	A	A1TS	POPTR_0011s07450	POPTR_0011s07450 (11)	scaffold_11:8303262-8303631(+) (11)	NA	Q9S7Y1	Transcription factor bHLH30	AT1G68810.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g06640.3	"basic helix-loop-helix, putative, expressed"	Medtr4g128050.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209908.1.S1_at	A	A1MS	POPTR_0011s07460	POPTR_0011s07460 (10)	scaffold_11:8308476-8309751(+) (10)	NA	Q94CD5	Ubiquitin-like modifier-activating enzyme atg7	AT5G45900.1	ThiF family protein 	LOC_Os01g42850.2	"ThiF family domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209909.1.S1_at	A	A1TS	POPTR_0011s07470	POPTR_0011s07470 (11)	scaffold_11:8324173-8324769(+) (11)	NA	Q9CAG5	U-box domain-containing protein 7	AT2G27430.1	ARM repeat superfamily protein 	LOC_Os05g49810.1	armadillo/beta-catenin-like repeat containing protein	Medtr3g138130.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209911.1.S1_at	A	A1TS	POPTR_0011s07590	POPTR_0011s07590 (11)	scaffold_11:8424298-8424806(+) (11)	NA	NA	NA	AT4G18540.1	unknown protein; Has 209 Blast hits to 205 proteins in 54 species: Archae - 0; Bacteria - 17; Metazoa - 2; Fungi - 150; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g42760.1	"integral membrane protein TmpA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209913.1.S1_at	A	A1TS	POPTR_0011s07680	POPTR_0011s07680 (11)	scaffold_11:8526146-8526357(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209914.1.S1_at	A	A1TS	POPTR_0011s07700	POPTR_0011s07700 (11)	scaffold_11:8529468-8530745(-) (11)	NA	P16128	Uncharacterized protein At4g18490	AT4G18490.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g55094.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209915.1.S1_at	A	A1TS	POPTR_0011s07720	POPTR_0011s07720 (11)	scaffold_11:8538531-8538961(+) (11)	NA	P93162	"Magnesium-chelatase subunit chlI, chloroplastic"	AT5G45930.1	magnesium chelatase i2 	LOC_Os03g36540.1	"magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed"	Medtr2g018830.1	"Magnesium chelatase, ChlI subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209916.1.S1_s_at	A	A3TS	POPTR_0011s07770	POPTR_0011s07800 (11)//POPTR_0011s07770 (11)//POPTR_0011s07780 (11)	scaffold_11:8604884-8605181(+) (11)//scaffold_11:8618248-8618542(+) (11)//scaffold_11:8662005-8662299(+) (11)//scaffold_11:8688805-8689099(+) (11)//scaffold_22:600585-600882(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g26000.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.209917.1.S1_at	A	A1TS	POPTR_0011s07790	POPTR_0011s07790 (11)	scaffold_11:8676789-8676877(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209918.1.S1_s_at	A	A2TS	POPTR_0011s10620	POPTR_0011s10620 (11)//POPTR_0011s10640 (11)	scaffold_11:13165882-13166381(-) (11)//scaffold_11:13181990-13182469(-) (11)//scaffold_81:7646-8113(-) (10)	NA	Q9C9H7	Receptor-like protein 12	AT5G40170.1	receptor like protein 54 	LOC_Os04g40440.1	expressed protein	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.209918.1.S1_x_at	A	A1TS	POPTR_0011s10620	POPTR_0011s10620 (11)	scaffold_11:13165843-13166505(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT5G40170.1	receptor like protein 54 	LOC_Os04g40440.1	expressed protein	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.209919.1.S1_x_at	A	A1TS	POPTR_0011s10660	POPTR_0011s10660 (11)	scaffold_11:13226230-13226573(-) (11)	NA	NA	NA	AT2G24420.2	DNA repair ATPase-related 	LOC_Os08g40790.3	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209920.1.S1_at	A	A1TS	POPTR_0011s10680	POPTR_0011s10680 (11)	scaffold_11:13263014-13264323(-) (11)	POPTR_0001s39270 (6)	Q9SYM1	Uncharacterized mscS family protein At1g78610	AT1G78610.1	mechanosensitive channel of small conductance-like 6 	LOC_Os02g44770.1	"uncharacterized mscS family protein, putative, expressed"	Medtr1g143150.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.209921.1.S1_at	A	A1TS	POPTR_0011s10690	POPTR_0011s10690 (11)	scaffold_11:13274756-13276171(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g22534.3	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209923.1.S1_at	A	A1TS	POPTR_0011s10730	POPTR_0011s10730 (10)	scaffold_11:13311936-13312549(-) (10)	NA	NA	NA	AT2G34070.1	TRICHOME BIREFRINGENCE-LIKE 37 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g064330.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209924.1.S1_at	A	A1TS	POPTR_0011s10760	POPTR_0011s10760 (11)	scaffold_11:13340606-13340976(+) (11)	NA	NA	NA	AT2G34380.1	Putative adipose-regulatory protein (Seipin) 	LOC_Os09g36360.1	"protein of unknown function containing protein, expressed"	Medtr2g021370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209925.1.S1_at	A	A1TS	POPTR_0011s10860	POPTR_0011s10860 (11)	scaffold_11:13414857-13415411(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209926.1.S1_at	A	A2MS	POPTR_0011s10890	POPTR_0011s10890 (11)//POPTR_0012s11220 (10)	scaffold_11:13454782-13456564(+) (11)//scaffold_12:11749067-11750837(-) (10)	NA	O65355	Gamma-glutamyl hydrolase	AT1G78680.1	gamma-glutamyl hydrolase 2 	LOC_Os05g44130.1	"gamma-glutamyl hydrolase precursor, putative, expressed"	Medtr2g091580.1	Peptidase C26 	GO:0006541|glutamine metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.209927.1.S1_at	A	A2MS	POPTR_0011s10960	POPTR_0011s10960 (11)//POPTR_0011s10970 (9)	scaffold_11:13676458-13676990(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	NA	NA	Medtr4g084300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209928.1.S1_at	A	A1TS	POPTR_0011s10980	POPTR_0011s10980 (11)	scaffold_11:13679669-13680181(-) (11)	NA	Q9MAG8	Putative pentatricopeptide repeat-containing protein At1g53330	AT1G53330.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g11700.1	PPR repeat containing protein	Medtr8g068510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209929.1.S1_at	A	A1TS	POPTR_0011s10990	POPTR_0011s10990 (11)	scaffold_11:13689815-13689971(+) (11)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209929.1.S1_x_at	A	A1TS	POPTR_0011s10990	POPTR_0011s10990 (11)	scaffold_11:13689815-13689971(+) (11)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209930.1.S1_at	A	A1TS	POPTR_0011s11000	POPTR_0011s11000 (11)	scaffold_11:13698135-13698758(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g135600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209931.1.S1_at	A	A1TS	POPTR_0011s11050	POPTR_0011s11050 (11)	scaffold_11:13737233-13737701(-) (11)	NA	Q4VZL0	Putative membrane protein ycf1	ATCG01130.1	Ycf1 protein 	NA	NA	Medtr4g023010.1	Ycf1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209932.1.S1_at	A	A1TS	POPTR_0011s11090	POPTR_0011s11090 (11)	scaffold_11:13754876-13755996(-) (11)	NA	NA	NA	AT1G78810.1	unknown protein; Has 75 Blast hits to 52 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os06g06014.4	expressed protein	Medtr2g092130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209934.1.S1_at	A	A1TS	POPTR_0011s11220	POPTR_0011s11220 (11)	scaffold_11:13969119-13969296(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209935.1.S1_at	A	A1TS	POPTR_0011s11230	POPTR_0011s11230 (11)	scaffold_11:13971036-13971710(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT3G50940.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g42030.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr2g092810.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.209936.1.S1_at	A	A1TS	POPTR_0011s11240	POPTR_0011s11240 (11)	scaffold_11:13973751-13974412(+) (11)	NA	Q54HY8	Probable mitochondrial chaperone BCS1-A	AT3G50940.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr2g092750.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.209937.1.S1_at	A	A1TS	POPTR_0011s11270	POPTR_0011s11270 (11)	scaffold_11:13996383-13996800(-) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT1G53300.1	tetratricopetide-repeat thioredoxin-like 1 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.209939.1.S1_at	A	A1TS	POPTR_0011s11340	POPTR_0011s11340 (11)	scaffold_11:14060671-14061187(-) (11)	NA	Q9MAH4	ABC transporter G family member 10	AT1G53270.1	ABC-2 type transporter family protein 	LOC_Os01g42900.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr4g142950.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.209940.1.S1_at	A	A1TS	POPTR_0011s11360	POPTR_0011s11360 (11)	scaffold_11:14076867-14077949(-) (11)	NA	NA	NA	AT1G53250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53800.1); Has 11909 Blast hits to 7704 proteins in 757 species: Archae - 51; Bacteria - 1338; Metazoa - 4550; Fungi - 987; Plants - 464; Viruses - 24; Other Eukaryotes - 4495 (source: NCBI BLink). 	LOC_Os10g12354.1	"endonuclease, putative, expressed"	NA	NA	NA	GO:0004519|endonuclease activity	NA
PtpAffx.209941.1.S1_at	A	A1TS	POPTR_0011s11370	POPTR_0011s11370 (11)	scaffold_11:14107708-14108301(+) (11)	NA	Q9M6E8	"9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic"	AT3G14440.1	nine-cis-epoxycarotenoid dioxygenase 3 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209941.1.S1_s_at	A	A1TS	POPTR_0011s11370	POPTR_0011s11370 (11)	scaffold_11:14107948-14108285(+) (11)	NA	Q9M6E8	"9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic"	AT3G14440.1	nine-cis-epoxycarotenoid dioxygenase 3 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209941.1.S1_x_at	A	A1TS	POPTR_0011s11370	POPTR_0011s11370 (11)	scaffold_11:14107708-14108302(+) (11)	NA	Q9M6E8	"9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic"	AT3G14440.1	nine-cis-epoxycarotenoid dioxygenase 3 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209942.1.S1_at	A	A1MS	POPTR_0011s11380	POPTR_0011s11380 (11)	scaffold_11:14134156-14134226(-) (11)	NA	Q13895	Bystin	AT1G31660.1	CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). 	LOC_Os09g18320.1	"bystin, putative, expressed"	Medtr5g026110.1	Bystin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209942.1.S1_s_at	A	A2TS	POPTR_0001s40440	POPTR_0001s40440 (11)//POPTR_0011s11380 (11)	scaffold_1:39883664-39887853(-) (11)//scaffold_11:14134218-14137714(-) (11)	NA	Q5E9N0	Bystin	AT1G31660.1	CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). 	LOC_Os09g18320.1	"bystin, putative, expressed"	Medtr5g026110.1	Bystin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209942.1.S1_x_at	A	A1MS	POPTR_0011s11380	POPTR_0011s11380 (10)	scaffold_11:14134156-14137720(-) (11)	NA	Q13895	Bystin	AT1G31660.1	CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). 	LOC_Os09g18320.1	"bystin, putative, expressed"	Medtr5g026110.1	Bystin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209943.1.S1_at	A	A1TS	POPTR_0011s11410	POPTR_0011s11410 (11)	scaffold_11:14181325-14182423(+) (11)	NA	Q9FPS2	Ubiquitin carboxyl-terminal hydrolase 25	AT3G14400.1	ubiquitin-specific protease 25 	LOC_Os05g43480.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g145470.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.209945.1.S1_s_at	A	A2TS	POPTR_0011s11480	POPTR_0011s11480 (11)//POPTR_0011s11550 (11)	scaffold_11:14226562-14227373(-) (11)//scaffold_11:14297696-14298513(+) (11)	NA	Q54XK2	Protein transport protein Sec61 subunit alpha	AT1G78720.1	SecY protein transport family protein 	LOC_Os03g11440.1	"protein transport protein Sec61 subunit alpha, putative, expressed"	Medtr8g068450.1	SecY protein; ABC transporter related 	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
PtpAffx.209946.1.S1_s_at	A	A1TS	POPTR_0011s11510	POPTR_0011s11510 (11)	scaffold_11:14241321-14241551(-) (11)	NA	Q9FN29	Homeobox-leucine zipper protein ATHB-52	AT5G53980.1	homeobox protein 52 	LOC_Os03g08960.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g113090.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.209947.1.S1_at	A	A1TS	POPTR_0011s11530	POPTR_0011s11530 (11)	scaffold_11:14285691-14286150(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.209949.1.S1_at	A	A1TS	POPTR_0011s11570	POPTR_0011s11570 (11)	scaffold_11:14315443-14317613(-) (11)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.209950.1.S1_at	A	A1TS	POPTR_0011s11580	POPTR_0011s11580 (11)	scaffold_11:14351880-14353208(+) (11)	NA	NA	NA	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209951.1.S1_at	A	A1TS	POPTR_0011s11590	POPTR_0011s11590 (11)	scaffold_11:14381868-14382722(+) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT1G48120.1	hydrolases;protein serine/threonine phosphatases 	LOC_Os02g37950.3	"transposon protein, putative, unclassified, expressed"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209952.1.S1_at	A	A1TS	POPTR_0011s11600	POPTR_0011s11600 (11)	scaffold_11:14384946-14384992(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G53950.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g23650.1	"no apical meristem protein, putative, expressed"	Medtr3g132820.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.209952.1.S1_x_at	A	A1TS	POPTR_0011s11600	POPTR_0011s11600 (11)	scaffold_11:14384930-14385316(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G53950.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g23650.1	"no apical meristem protein, putative, expressed"	Medtr3g132820.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.209953.1.S1_at	A	A1TS	POPTR_0011s11610	POPTR_0011s11610 (11)	scaffold_11:14394460-14395040(-) (11)	NA	Q9LIL5	Putative pentatricopeptide repeat-containing protein At3g15200	AT3G15200.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g05860.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g071280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209954.1.S1_at	A	A1TS	POPTR_0011s11650	POPTR_0011s11650 (11)	scaffold_11:14442105-14442465(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209955.1.S1_at	A	A1TS	POPTR_0011s11670	POPTR_0011s11670 (11)	scaffold_11:14456572-14457140(-) (11)	NA	Q84LH3	Werner Syndrome-like exonuclease	AT3G12410.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g53590.1	"3-5 exonuclease domain-containing protein, putative"	Medtr2g085350.1	"Polynucleotidyl transferase, Ribonuclease H fold "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.209956.1.S1_at	A	A1TS	POPTR_0011s11740	POPTR_0011s11740 (11)	scaffold_11:14524337-14525604(+) (11)//scaffold_2:18978262-18979754(-) (9)	POPTR_0001s18910 (7)	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209957.1.S1_s_at	A	A1TS	POPTR_0011s11780	POPTR_0011s11780 (11)	scaffold_11:14561629-14562197(-) (11)	NA	Q9FN37	Phytosulfokine receptor 2	AT5G53890.1	phytosylfokine-alpha receptor 2 	LOC_Os07g01710.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.209959.1.S1_a_at	A	A3TS	POPTR_0011s11820	POPTR_0011s11820 (11)//POPTR_0131s00200 (11)//POPTR_0131s00220 (11)	scaffold_11:14613054-14613101(-) (11)//scaffold_11:14613684-14613731(-) (11)//scaffold_131:78-125(-) (11)//scaffold_131:20278-20325(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G23550.1	MATE efflux family protein 	LOC_Os07g01750.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.209959.1.S1_at	A	A1TS	POPTR_0011s11820	POPTR_0011s11820 (10)	scaffold_11:14613078-14614299(-) (10)//scaffold_131:56-693(-) (10)	POPTR_0131s00200 (8)//POPTR_0131s00220 (6)	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G23550.1	MATE efflux family protein 	LOC_Os07g01750.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.209960.1.S1_s_at	A	A2TS	POPTR_0011s11840	POPTR_0011s11850 (11)//POPTR_0011s11840 (11)	scaffold_11:14629722-14629897(-) (11)//scaffold_11:14637644-14637819(-) (11)//scaffold_131:52113-52288(-) (10)	POPTR_0131s00230 (8)	Q05047	Secologanin synthase	AT3G14620.1	"cytochrome P450, family 72, subfamily A, polypeptide 8 "	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.209962.1.S1_at	A	A1TS	POPTR_0011s11860	POPTR_0011s11860 (11)	scaffold_11:14648783-14648827(+) (11)	NA	Q9T076	Early nodulin-like protein 2	AT5G53870.1	early nodulin-like protein 1 	LOC_Os01g54430.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g144210.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.209962.1.S1_s_at	A	A1TS	POPTR_0011s11860	POPTR_0011s11860 (11)	scaffold_11:14648248-14648786(+) (11)	NA	Q9T076	Early nodulin-like protein 2	AT5G53870.1	early nodulin-like protein 1 	LOC_Os01g54430.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g144210.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.209963.1.S1_at	A	A1MS	POPTR_0011s11910	POPTR_0011s11910 (10)	scaffold_11:14686118-14686564(-) (11)	NA	NA	NA	AT1G28280.2	VQ motif-containing protein 	LOC_Os01g54400.1	"VQ domain containing protein, putative, expressed"	Medtr2g017460.1	DNA-binding WRKY; VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209965.1.S1_at	A	A1TS	POPTR_0011s11920	POPTR_0011s11920 (11)	scaffold_11:14707383-14708140(-) (11)	NA	NA	NA	AT1G53140.1	Dynamin related protein 5A 	LOC_Os01g54420.1	"dynamin family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209966.1.S1_at	A	A1TS	POPTR_0011s11930	POPTR_0011s11930 (11)	scaffold_11:14712881-14713473(-) (11)	NA	Q55AX0	Dynamin-like protein C	AT1G53140.1	Dynamin related protein 5A 	LOC_Os01g54420.1	"dynamin family protein, putative, expressed"	Medtr4g156910.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.209967.1.S1_at	A	A1TS	POPTR_0011s11940	POPTR_0011s11940 (11)	scaffold_11:14729946-14730187(+) (11)	NA	NA	NA	AT1G53130.1	Stigma-specific Stig1 family protein 	LOC_Os05g18940.1	"STIGL3 - Stigma-specific Stig1 family protein precursor, putative"	Medtr2g100500.1	Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209969.1.S1_at	A	A1TS	POPTR_0011s11990	POPTR_0011s11990 (11)	scaffold_11:14769861-14770232(-) (11)	NA	NA	NA	AT1G53040.2	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g100710.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209969.1.S1_s_at	A	A2TS	POPTR_0001s41050	POPTR_0011s11990 (11)//POPTR_0001s41050 (11)	scaffold_1:40720932-40721939(+) (11)//scaffold_11:14769919-14771205(-) (11)	NA	NA	NA	AT1G53040.2	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g100710.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209971.1.S1_at	A	A1TS	POPTR_0011s12030	POPTR_0011s12030 (11)	scaffold_11:14809689-14809845(-) (11)	NA	Q9EPI0	Xylosyltransferase 2	AT3G15350.2	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g10440.1	"xylosyltransferase, putative, expressed"	Medtr2g100560.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.209972.1.S1_at	A	A1TS	POPTR_0011s12060	POPTR_0011s12060 (11)	scaffold_11:14844249-14844638(-) (11)	NA	NA	NA	AT1G04360.1	RING/U-box superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209973.1.S1_at	A	A1TS	POPTR_0011s12180	POPTR_0011s12180 (11)	scaffold_11:14941061-14941502(+) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.4	"OsFBX331 - F-box domain containing protein, expressed"	Medtr3g008640.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209974.1.S1_at	A	A1TS	POPTR_0011s12190	POPTR_0011s12190 (10)	scaffold_11:14946348-14946932(-) (10)	NA	NA	NA	AT1G65910.1	NAC domain containing protein 28 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr7g143100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.209975.1.S1_at	A	A1TS	POPTR_0011s12200	POPTR_0011s12200 (11)	scaffold_11:14953898-14954656(+) (11)	NA	Q9FZ52	F-box/FBD/LRR-repeat protein At1g16930	AT1G16930.1	F-box/RNI-like/FBD-like domains-containing protein 	LOC_Os11g10180.1	"OsFBX412 - F-box domain containing protein, expressed"	Medtr8g074530.1	Cyclin-like F-box; FBD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209976.1.S1_at	A	A1TS	POPTR_0011s12210	POPTR_0011s12210 (11)	scaffold_11:14960715-14961360(+) (11)	NA	Q8L7H1	F-box/LRR-repeat protein At4g14103	AT4G14103.1	F-box/RNI-like superfamily protein 	LOC_Os04g13160.1	"OsFBD9 - F-box and FBD domain containing protein, expressed"	Medtr4g110360.1	Cyclin-like F-box; FBD; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209978.1.S1_at	A	A1TS	POPTR_0011s12290	POPTR_0011s12290 (11)	scaffold_11:15039612-15040338(+) (11)	NA	Q9JJK2	LanC-like protein 2	AT1G52920.1	G protein coupled receptor 	LOC_Os10g35480.1	"lanC-like protein 2, putative, expressed"	Medtr3g102050.2	Lanthionine synthetase C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209979.1.S1_at	A	A1TS	POPTR_0011s12330	POPTR_0011s12330 (10)	scaffold_11:15070731-15071347(-) (10)	NA	NA	NA	AT1G61065.1	Protein of unknown function (DUF1218) 	NA	NA	AC233672_3.1	Protein of unknown function DUF1218 AC233672.2 10435-11337 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209980.1.S1_at	A	A1TS	POPTR_0011s12350	POPTR_0011s12350 (11)	scaffold_11:15081649-15082217(+) (11)	NA	NA	NA	AT2G14830.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os08g07830.1	"DUF292 domain containing protein, expressed"	Medtr4g047240.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209981.1.S1_s_at	A	A1TS	POPTR_0011s12360	POPTR_0011s12360 (11)	scaffold_11:15082688-15083262(-) (11)	NA	NA	NA	AT4G27430.2	COP1-interacting protein 7 	LOC_Os07g26440.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209982.1.S1_at	A	A1TS	POPTR_0011s12370	POPTR_0011s12370 (11)	scaffold_11:15096105-15096234(+) (11)	NA	Q8S8I4	Protein EPIDERMAL PATTERNING FACTOR 1	AT2G20875.1	epidermal patterning factor 1 	LOC_Os04g54490.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209983.1.S1_at	A	A1TS	POPTR_0011s12390	POPTR_0011s12390 (11)	scaffold_11:15117269-15117847(+) (11)	NA	Q9SZR9	ABC transporter G family member 9	AT4G27420.1	ABC-2 type transporter family protein 	LOC_Os03g06139.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.209985.1.S1_at	A	A1TS	POPTR_0011s12410	POPTR_0011s12410 (11)	scaffold_11:15165829-15166541(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209986.1.S1_x_at	A	A1TS	POPTR_0011s12450	POPTR_0011s12450 (9)	scaffold_11:15188800-15189126(-) (9)	NA	P82869	"Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic"	AT3G15520.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g37830.2	"peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209987.1.S1_at	A	A1MS	POPTR_0011s12460	POPTR_0011s12460 (11)	scaffold_11:15194382-15195331(+) (11)	NA	Q556Z3	Trafficking protein particle complex subunit 10	AT5G54440.1	CLUB 	LOC_Os12g36760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209987.1.S1_s_at	A	A1TS	POPTR_0011s12460	POPTR_0011s12460 (11)	scaffold_11:15194404-15195282(+) (11)	NA	Q556Z3	Trafficking protein particle complex subunit 10	AT5G54440.1	CLUB 	LOC_Os12g36760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209988.1.S1_at	A	A1TS	POPTR_0011s12460	POPTR_0011s12460 (11)	scaffold_11:15196125-15196278(+) (11)	NA	Q556Z3	Trafficking protein particle complex subunit 10	AT5G54440.1	CLUB 	LOC_Os12g36760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209989.1.S1_at	A	A1TS	POPTR_0011s12460	POPTR_0011s12460 (10)	scaffold_11:15196774-15197418(+) (11)	NA	Q556Z3	Trafficking protein particle complex subunit 10	AT5G54440.1	CLUB 	LOC_Os12g36760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209990.1.S1_at	A	A1TS	POPTR_0011s12550	POPTR_0011s12550 (11)	scaffold_11:15291998-15292214(+) (11)	NA	Q9LK35	Receptor-like protein kinase THESEUS 1	AT5G54380.1	protein kinase family protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g079470.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209991.1.S1_at	A	A1TS	POPTR_0011s12560	POPTR_0011s12560 (11)	scaffold_11:15294398-15294917(-) (11)	NA	NA	NA	AT5G54370.1	Late embryogenesis abundant (LEA) protein-related 	LOC_Os05g47940.1	RCLEA8 - Root cap and Late embryogenesis related family protein precursor	Medtr4g081530.1	Root cap 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209992.1.S1_at	A	A1TS	POPTR_0011s12570	POPTR_0011s12570 (11)	scaffold_11:15296771-15299094(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g076170.2	Bet v I allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209993.1.S1_s_at	A	A1TS	POPTR_0011s12590	POPTR_0011s12590 (11)	scaffold_11:15302874-15303268(+) (11)	NA	Q9LID0	Lysine-specific histone demethylase 1 homolog 2	AT3G13682.1	LSD1-like2 	LOC_Os08g04780.1	"amine oxidase, putative, expressed"	Medtr3g076130.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.209994.1.S1_at	A	A1TS	POPTR_0011s12600	POPTR_0011s12600 (10)	scaffold_11:15306807-15306951(-) (10)	NA	Q8S8I2	Protein ULTRAPETALA 2	AT2G20825.1	"Developmental regulator, ULTRAPETALA "	LOC_Os01g57240.1	expressed protein	AC229695_18.1	"Protein ULTRAPETALA 2, putative AC229695.5 71913-72961 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209995.1.S1_at	A	A1TS	POPTR_0011s12650	POPTR_0011s12650 (11)	scaffold_11:15357837-15358635(+) (11)	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.209996.1.S1_at	A	A1TS	POPTR_0011s12660	POPTR_0011s12660 (11)	scaffold_11:15365011-15366073(+) (11)	NA	NA	NA	AT1G61260.1	Protein of unknown function (DUF761) 	LOC_Os07g37620.1	"fiber expressed protein, putative, expressed"	Medtr2g095300.1	"Protein of unknown function DUF761, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209997.1.S1_s_at	A	A1TS	POPTR_0011s12670	POPTR_0011s12670 (11)	scaffold_11:15390909-15392085(+) (11)	NA	P08799	Myosin-2 heavy chain	AT5G54280.2	myosin 2 	LOC_Os07g37560.1	"myosin-Vb, putative, expressed"	Medtr2g095370.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.209999.1.S1_s_at	A	A1TS	POPTR_0011s12710	POPTR_0011s12710 (11)	scaffold_11:15408809-15408979(+) (11)	NA	NA	NA	AT5G54240.1	Protein of unknown function (DUF1223) 	LOC_Os07g37310.1	"uncharacterized secreted protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210.1.S1_at	A	A1TS	POPTR_0013s04160	POPTR_0013s04160 (10)	scaffold_13:2772301-2774982(+) (10)	NA	Q8TCB7	Methyltransferase-like protein 6	AT1G54650.2	Methyltransferase family protein 	LOC_Os07g23169.1	"methyltransferase, putative, expressed"	Medtr1g093380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210000.1.S1_at	A	A1TS	POPTR_0011s12750	POPTR_0011s12750 (11)	scaffold_11:15438731-15439082(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT4G21440.1	MYB-like 102 	LOC_Os07g37210.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210001.1.S1_at	A	A1TS	POPTR_0011s12750	POPTR_0011s12750 (11)	scaffold_11:15439704-15440256(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT4G21440.1	MYB-like 102 	LOC_Os07g37210.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210003.1.S1_at	A	A1TS	POPTR_0011s12790	POPTR_0011s12790 (11)	scaffold_11:15480542-15481374(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g095640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210004.1.S1_at	A	A1TS	POPTR_0011s12810	POPTR_0011s12810 (11)	scaffold_11:15500402-15501266(-) (11)	NA	Q9LQZ7	Probable salt tolerance-like protein At1g75540	AT5G54470.1	B-box type zinc finger family protein 	LOC_Os08g08120.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g103200.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.210005.1.S1_at	A	A1TS	POPTR_0011s12920	POPTR_0011s12920 (11)	scaffold_11:15613939-15614294(+) (11)//scaffold_11:15624590-15624945(+) (11)	POPTR_0011s12910 (7)	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210006.1.S1_at	A	A1TS	POPTR_0011s12940	POPTR_0011s12940 (11)	scaffold_11:15639936-15640348(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210008.1.S1_at	A	A1TS	POPTR_0011s13015	POPTR_0011s13015 (11)	scaffold_11:15730045-15730878(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210008.1.S1_x_at	A	A1TS	POPTR_0011s13015	POPTR_0011s13015 (11)	scaffold_11:15730045-15730877(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210009.1.S1_at	A	A1TS	POPTR_0011s13160	POPTR_0011s13160 (11)	scaffold_11:15872505-15873111(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210010.1.S1_at	A	A2TS	POPTR_0011s13230	POPTR_0011s13230 (11)//POPTR_0011s13200 (10)	scaffold_11:15903315-15903847(-) (11)//scaffold_11:15930273-15930806(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210013.1.S1_at	A	A1TS	POPTR_0011s13320	POPTR_0011s13320 (11)	scaffold_11:16031056-16032291(-) (11)	NA	Q8GXT3	Transcription factor bHLH123	AT3G20640.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g42180.1	"ethylene-responsive protein related, putative"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.210014.1.S1_at	A	A1TS	POPTR_0011s13330	POPTR_0011s13330 (11)	scaffold_11:16098144-16098655(+) (11)	NA	Q9LSQ4	Indole-3-acetic acid-amido synthetase GH3.6	AT5G54510.1	Auxin-responsive GH3 family protein 	LOC_Os01g57610.1	"OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr2g096120.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210015.1.S1_at	A	A1TS	POPTR_0011s13340	POPTR_0011s13340 (11)	scaffold_11:16109922-16110429(-) (11)	NA	Q38834	Disease resistance RPP13-like protein 4	AT3G50950.1	HOPZ-ACTIVATED RESISTANCE 1 	LOC_Os09g11020.1	"NBS-LRR disease resistance protein, putative"	AC231357_5.1	NB-ARC; Eubacterial ribosomal protein L10 AC231357.5 22096-24538 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210016.1.S1_at	A	A1MS	POPTR_0011s13350	POPTR_0011s13350 (11)	scaffold_11:16119708-16120018(+) (11)	NA	NA	NA	AT5G54530.1	"Protein of unknown function, DUF538 "	LOC_Os07g36410.1	expressed protein	Medtr2g011040.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210017.1.S1_at	A	A1TS	POPTR_0011s13375	POPTR_0011s13375 (11)	scaffold_11:16135592-16136468(-) (11)	NA	Q9FIU7	Putative beta-glucosidase 41	AT5G54570.1	beta glucosidase 41 	LOC_Os06g46940.2	"Os6bglu25 - beta-glucosidase homologue, similar to Os3bglu6, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210018.1.S1_at	A	A1TS	POPTR_0011s13390	POPTR_0011s13390 (11)	scaffold_11:16153975-16154503(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21002.1.S1_at	A	A1TS	POPTR_0003s09450	POPTR_0003s09450 (10)	scaffold_3:10723158-10723606(-) (10)	POPTR_0001s02050 (6)	Q9LQN4	Probable calcium-binding protein CML17	AT1G32250.1	Calcium-binding EF-hand family protein 	LOC_Os01g32120.1	"OsCML11 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g077900.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210020.1.S1_at	A	A1MA	POPTR_0011s13420	POPTR_0011s13420 (11)	scaffold_11:16165767-16165925(-) (11)	NA	P93665	(+)-delta-cadinene synthase	AT3G14490.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os08g07100.1	"terpene synthase, putative, expressed"	Medtr5g102100.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.210021.1.S1_at	A	A2MS	POPTR_0489s00200	POPTR_0489s00200 (11)//POPTR_0011s13420 (10)	scaffold_11:16166131-16166986(+) (10)//scaffold_489:6204-7161(-) (11)	NA	Q9XJ32	Vetispiradiene synthase 1	AT3G14490.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os03g24690.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	NA	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.210022.1.S1_at	A	A1TS	POPTR_0011s13460	POPTR_0011s13460 (11)	scaffold_11:16195648-16195959(-) (11)	NA	Q69VG1	Chitin-inducible gibberellin-responsive protein 1	AT1G50600.1	scarecrow-like 5 	LOC_Os07g36170.2	"chitin-inducible gibberellin-responsive protein, putative, expressed"	Medtr2g096350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210023.1.S1_at	A	A1TS	POPTR_0011s13470	POPTR_0011s13470 (11)	scaffold_11:16215442-16217545(+) (11)	NA	Q9LFV3	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730	AT5G54590.2	Protein kinase superfamily protein 	LOC_Os08g04420.2	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr2g096390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210025.1.S1_at	A	A1TS	POPTR_0011s13480	POPTR_0011s13480 (11)	scaffold_11:16225535-16225725(-) (11)	NA	NA	NA	AT5G54630.1	zinc finger protein-related 	LOC_Os01g57650.1	"ZOS1-12 - C2H2 zinc finger protein, expressed"	Medtr4g111260.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210026.1.S1_at	A	A1TS	POPTR_0011s13500	POPTR_0011s13500 (11)	scaffold_11:16239582-16240148(-) (11)	NA	P0CB23	Uncharacterized protein At4g38062	AT4G38070.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g48490.1	"centromere protein, putative, expressed"	Medtr2g009630.1	"Centromere protein, putative "	GO:0016032|viral reproduction	NA	NA
PtpAffx.210027.1.S1_at	A	A1MS	POPTR_0011s13505	POPTR_0011s13505 (10)	scaffold_11:16245321-16246348(-) (11)	NA	Q2TBE0	CWF19-like protein 2	AT1G56290.1	CwfJ-like family protein 	LOC_Os03g52980.1	"CWF19-like 2, cell cycle control, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210028.1.S1_at	A	A1TS	POPTR_0011s13510	POPTR_0011s13510 (11)	scaffold_11:16249462-16250044(-) (11)	NA	Q94B77	Formin-like protein 5	AT5G54650.2	formin homology5 	LOC_Os07g36150.1	"formin-like protein 3 precursor, putative, expressed"	Medtr4g111250.1	Pyridoxal-dependent decarboxylase; Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210029.1.S1_at	A	A1TS	POPTR_0011s13540	POPTR_0011s13540 (11)	scaffold_11:16283160-16283648(-) (11)	NA	NA	NA	AT3G01440.1	PsbQ-like 1 	LOC_Os07g01480.1	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210030.1.S1_s_at	A	A2TS	POPTR_0011s13550	POPTR_0011s13570 (11)//POPTR_0011s13550 (11)	scaffold_11:16285739-16286467(+) (11)//scaffold_11:16296536-16297262(+) (11)	NA	Q10251	Eukaryotic translation initiation factor 5B	AT1G76820.1	eukaryotic translation initiation factor 2 (eIF-2) family protein 	LOC_Os05g51500.1	"eukaryotic translation initiation factor 5B, putative, expressed"	Medtr1g125430.1	Small GTP-binding protein domain; Translation factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210031.1.S1_at	A	A1TS	POPTR_0011s13560	POPTR_0011s13560 (11)	scaffold_11:16290032-16290514(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210033.1.S1_at	A	A1TS	POPTR_0011s13590	POPTR_0011s13590 (11)	scaffold_11:16304602-16304982(+) (11)	NA	NA	NA	AT3G20680.1	Domain of unknown function (DUF1995) 	LOC_Os05g42100.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210034.1.S1_at	A	A1TS	POPTR_0011s13610	POPTR_0011s13610 (11)	scaffold_11:16315456-16316106(-) (11)	NA	Q9H6U6	Breast carcinoma-amplified sequence 3	AT5G54730.1	homolog of yeast autophagy 18 (ATG18) F 	LOC_Os01g57720.2	expressed protein	Medtr2g096860.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210035.1.S1_at	A	A1TS	POPTR_0011s13620	POPTR_0011s13620 (9)	scaffold_11:16333055-16334476(+) (11)	NA	A2RSJ4	UHRF1-binding protein 1-like	AT3G20720.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os04g53670.1	expressed protein	Medtr4g111120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210036.1.S1_at	A	A1TS	POPTR_0011s13620	POPTR_0011s13620 (11)	scaffold_11:16338624-16339520(+) (11)	NA	A2RSJ4	UHRF1-binding protein 1-like	AT3G20720.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os04g53670.1	expressed protein	Medtr4g111120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210037.1.S1_at	A	A1TS	POPTR_0011s13640	POPTR_0011s13640 (11)	scaffold_11:16345720-16348988(-) (11)	NA	Q6NQ81	"Pentatricopeptide repeat-containing protein At4g04790, mitochondrial"	AT4G04790.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g03970.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g096990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210038.1.S1_at	A	A1TS	POPTR_0011s13640	POPTR_0011s13640 (9)	scaffold_11:16352929-16353516(-) (11)	NA	Q6NQ81	"Pentatricopeptide repeat-containing protein At4g04790, mitochondrial"	AT4G04790.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g03970.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g096990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210040.1.S1_at	A	A1TS	POPTR_0011s13720	POPTR_0011s13720 (11)	scaffold_11:16400835-16401571(+) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28390.1	P-glycoprotein 18 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.210041.1.S1_s_at	A	A1TS	POPTR_0011s13740	POPTR_0011s13740 (11)	scaffold_11:16412952-16413572(-) (11)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT4G21200.1	gibberellin 2-oxidase 8 	LOC_Os02g41954.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr5g005780.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.210042.1.S1_at	A	A1TS	POPTR_0011s13740	POPTR_0011s13740 (11)	scaffold_11:16413561-16413717(-) (11)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT4G21200.1	gibberellin 2-oxidase 8 	LOC_Os02g41954.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr5g005780.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.210043.1.S1_at	A	A1TS	POPTR_0011s13750	POPTR_0011s13750 (9)	scaffold_11:16415724-16422342(-) (11)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT4G21200.3	gibberellin 2-oxidase 8 	LOC_Os04g44150.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr2g097040.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210044.1.S1_at	A	A1TS	POPTR_0011s13780	POPTR_0011s13780 (11)	scaffold_11:16432877-16433526(+) (11)	NA	P69309	Polyubiquitin	AT5G03240.3	polyubiquitin 3 	LOC_Os06g46770.6	"ubiquitin family protein, putative, expressed"	Medtr6g067240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210045.1.S1_at	A	A1TS	POPTR_0011s13800	POPTR_0011s13800 (10)	scaffold_11:16442629-16443144(-) (11)	NA	P01089	2S albumin	AT5G54740.1	seed storage albumin 5 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210045.1.S1_s_at	A	A1TS	POPTR_0011s13800	POPTR_0011s13800 (11)	scaffold_11:16442682-16443207(-) (11)	NA	P01089	2S albumin	AT5G54740.1	seed storage albumin 5 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210046.1.S1_at	A	A1TS	POPTR_0011s13840	POPTR_0011s13840 (10)	scaffold_11:16464959-16465594(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210047.1.S1_at	A	A1TS	POPTR_0011s13850	POPTR_0011s13850 (11)	scaffold_11:16470218-16470787(+) (11)	NA	Q9LJU0	COBRA-like protein 10	AT3G20580.1	COBRA-like protein 10 precursor 	LOC_Os06g47110.1	"COBRA-like protein precursor, putative, expressed"	Medtr2g097170.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210048.1.S1_s_at	A	A2TS	POPTR_0001s44500	POPTR_0011s13860 (11)//POPTR_0001s44500 (11)	scaffold_1:44893932-44896178(-) (11)//scaffold_11:16474557-16477300(-) (10)	NA	Q9CXF4	TBC1 domain family member 15	AT4G27100.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os11g37690.1	"TBC domain containing protein, expressed"	Medtr2g097180.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.210049.1.S1_at	A	A1TS	POPTR_0011s13910	POPTR_0011s13910 (11)	scaffold_11:16530481-16530567(-) (11)	NA	Q3U829	Uncharacterized protein KIAA0415	AT3G15160.1	unknown protein; Has 266 Blast hits to 264 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os04g53530.1	expressed protein	Medtr4g110580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210051.1.S1_at	A	A1TS	POPTR_0011s13940	POPTR_0011s13940 (11)	scaffold_11:16556912-16559680(+) (11)	NA	Q8W4D8	FHA domain-containing protein DDL	AT3G20550.1	SMAD/FHA domain-containing protein  	LOC_Os05g46780.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g064260.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210052.1.S1_at	A	A1TS	POPTR_0011s13950	POPTR_0011s13950 (11)	scaffold_11:16562080-16563778(+) (11)	NA	Q9C7X8	Putative F-box/LRR-repeat protein At1g56400	AT1G56400.1	F-box family protein 	LOC_Os07g36890.1	OsFBX253 - F-box domain containing protein	Medtr2g055350.1	"Putative F-box/LRR-repeat protein At1g56400, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210053.1.S1_at	A	A1TS	POPTR_0011s13960	POPTR_0011s13960 (11)	scaffold_11:16565637-16567143(-) (11)	NA	P87027	Septum-promoting GTP-binding protein 1	AT5G54840.1	Ras-related small GTP-binding family protein 	LOC_Os07g33850.2	"ras-related protein, putative, expressed"	Medtr5g099390.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.210053.1.S1_x_at	A	A1TS	POPTR_0011s13960	POPTR_0011s13960 (11)	scaffold_11:16565637-16567379(-) (11)	NA	P87027	Septum-promoting GTP-binding protein 1	AT5G54840.1	Ras-related small GTP-binding family protein 	LOC_Os07g33850.2	"ras-related protein, putative, expressed"	Medtr5g099390.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.210054.1.S1_at	A	A1TS	POPTR_0011s13990	POPTR_0011s13990 (10)	scaffold_11:16588061-16588574(+) (10)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT4G27060.1	ARM repeat superfamily protein 	LOC_Os07g33630.1	"HEAT repeat family protein, putative, expressed"	Medtr3g067150.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210055.1.S1_at	A	A1TS	POPTR_0011s14030	POPTR_0011s14030 (11)	scaffold_11:16619171-16619485(+) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g022890.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210055.1.S1_s_at	A	A1TS	POPTR_0011s14030	POPTR_0011s14030 (11)	scaffold_11:16619242-16619548(+) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g022890.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210056.1.S1_s_at	A	A2TS	POPTR_0011s14040	POPTR_0011s14050 (11)//POPTR_0011s14040 (11)	scaffold_11:16625383-16626202(+) (11)//scaffold_11:16633939-16634758(+) (11)	NA	NA	NA	AT5G54860.1	Major facilitator superfamily protein 	LOC_Os01g14100.1	"BT1 family protein, putative, expressed"	Medtr3g068240.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210057.1.S1_s_at	A	A1TS	POPTR_0001s44880	POPTR_0001s44880 (9)	scaffold_1:45254127-45254355(-) (9)//scaffold_11:16629550-16636255(+) (9)	NA	Q5M759	Vacuolar protein sorting-associated protein 22 homolog 1	AT4G27040.4	EAP30/Vps36 family protein 	LOC_Os09g36020.1	"EAP30/Vps36 family domain containing protein, expressed"	Medtr3g068260.1	EAP30 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210060.1.S1_at	A	A1TS	POPTR_0011s14060	POPTR_0011s14060 (11)	scaffold_11:16636771-16637219(+) (11)	NA	NA	NA	AT4G27040.4	EAP30/Vps36 family protein 	LOC_Os09g36020.1	"EAP30/Vps36 family domain containing protein, expressed"	Medtr3g068260.1	EAP30 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210061.1.S1_at	A	A1MS	POPTR_0011s14090	POPTR_0011s14090 (11)	scaffold_11:16650784-16651585(-) (11)	NA	Q50EK1	Cytochrome P450 716B1	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33440.1	"cytochrome P450, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.210062.1.S1_at	A	A1TS	POPTR_0011s14100	POPTR_0011s14100 (11)	scaffold_11:16652887-16653614(-) (11)	NA	Q50EK1	Cytochrome P450 716B1	AT2G42850.1	"cytochrome P450, family 718 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210064.1.S1_at	A	A1TS	POPTR_0011s14140	POPTR_0011s14140 (11)	scaffold_11:16674528-16674694(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210064.1.S1_x_at	A	A1TS	POPTR_0011s14140	POPTR_0011s14140 (11)	scaffold_11:16674528-16674694(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210065.1.S1_at	A	A1TS	POPTR_0011s14210	POPTR_0011s14210 (11)	scaffold_11:16703156-16704010(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210066.1.S1_at	A	A1TS	POPTR_0011s14220	POPTR_0011s14220 (11)	scaffold_11:16704686-16705973(-) (11)	NA	Q42670	1-acyl-sn-glycerol-3-phosphate acyltransferase	AT4G30580.1	Phospholipid/glycerol acyltransferase family protein 	LOC_Os04g53370.1	"acyltransferase, putative, expressed"	Medtr5g046470.1	1-acyl-sn-glycerol-3-phosphate acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.210067.1.S1_at	A	A1TS	POPTR_0011s14230	POPTR_0011s14230 (11)	scaffold_11:16719131-16719698(+) (11)	NA	NA	NA	AT2G32645.1	Domain of unknown function (DUF313)  	NA	NA	Medtr7g117300.1	Protein of unknown function DUF313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210068.1.S1_at	A	A1MS	POPTR_0011s14250	POPTR_0011s14250 (11)	scaffold_11:16729146-16729215(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210069.1.S1_at	A	A1TS	POPTR_0011s14260	POPTR_0011s14260 (11)	scaffold_11:16729880-16730649(-) (11)	NA	NA	NA	AT3G20490.1	unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). 	LOC_Os04g53360.1	expressed protein	Medtr5g099880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21007.1.S1_at	A	A1TS	POPTR_0001s33640	POPTR_0001s33640 (11)	scaffold_1:31855541-31856043(+) (11)	NA	NA	NA	AT5G40960.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104120.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210070.1.S1_at	A	A1TS	POPTR_0011s14270	POPTR_0011s14270 (11)	scaffold_11:16735371-16735613(+) (11)	NA	Q147X3	"N-alpha-acetyltransferase 30, NatC catalytic subunit"	AT2G38130.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os11g32280.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g097190.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.210071.1.S1_at	A	A1TS	POPTR_0011s14310	POPTR_0011s14310 (10)	scaffold_11:16758115-16758637(-) (10)	NA	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT1G17230.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g05740.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210072.1.S1_at	A	A1TS	POPTR_0011s14320	POPTR_0011s14320 (11)	scaffold_11:16767484-16768048(-) (11)	NA	A2YBX5	Protein kinase G11A	AT3G14370.1	Protein kinase superfamily protein 	LOC_Os03g14840.1	"AGC_PVPK_like_kin82y.8 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g119560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210074.1.S1_at	A	A1MS	POPTR_0011s14420	POPTR_0011s14420 (11)	scaffold_11:16833495-16834066(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g47180.1	"receptor-like protein kinase 2 precursor, putative, expressed"	AC233576_1.1	Protein kinase; AC233576.2 1048-3881 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210075.1.S1_at	A	A1TS	POPTR_0011s14440	POPTR_0011s14440 (9)	scaffold_11:16847578-16848031(-) (9)	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os01g04070.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr5g094230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.210076.1.S1_at	A	A1TS	POPTR_0011s14460	POPTR_0011s14460 (11)	scaffold_11:16857802-16858134(+) (11)	NA	Q8W566	Uncharacterized exonuclease domain-containing protein At3g15140	AT3G15140.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os06g24594.5	"exonuclease, putative, expressed"	Medtr1g114640.1	Exonuclease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210076.1.S1_s_at	A	A1TS	POPTR_0011s14460	POPTR_0011s14460 (11)	scaffold_11:16858841-16859789(+) (11)	NA	Q8W566	Uncharacterized exonuclease domain-containing protein At3g15140	AT3G15140.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os06g24594.5	"exonuclease, putative, expressed"	Medtr1g114640.1	Exonuclease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210077.1.S1_at	A	A1TS	POPTR_0011s14470	POPTR_0011s14470 (11)	scaffold_11:16864434-16864612(+) (11)	NA	P40340	Tat-binding homolog 7	AT3G15120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g47800.1	"AAA-type ATPase family protein, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.210078.1.S1_at	A	A1TS	POPTR_0011s14480	POPTR_0011s14480 (10)	scaffold_11:16871191-16871728(-) (10)	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30210.1	expressed protein	Medtr5g101150.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210079.1.S1_at	A	A1TS	POPTR_0011s14490	POPTR_0011s14490 (11)	scaffold_11:16873500-16873895(-) (11)	NA	P0C8L4	Uncharacterized protein At4g26480	AT5G56060.1	Domain of unknown function (DUF2431) 	LOC_Os09g30200.1	"ATP binding protein, putative, expressed"	Medtr5g101150.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210080.1.S1_at	A	A1TS	POPTR_0011s14510	POPTR_0011s14510 (11)	scaffold_11:16879046-16879993(-) (11)	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30200.1	"ATP binding protein, putative, expressed"	Medtr5g101150.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210082.1.S1_at	A	A1MS	POPTR_0011s14570	POPTR_0011s14570 (10)	scaffold_11:16919050-16919873(+) (10)	NA	NA	NA	AT1G79120.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os03g46460.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr3g138900.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210083.1.S1_at	A	A1TS	POPTR_0011s14600	POPTR_0011s14600 (11)	scaffold_11:16953020-16953611(+) (11)	NA	O49853	(+)-delta-cadinene synthase isozyme C2	AT5G23960.2	terpene synthase 21 	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr5g081450.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.210084.1.S1_at	A	A1TS	POPTR_0011s14620	POPTR_0011s14620 (9)	scaffold_11:16963484-16963910(-) (11)	NA	NA	NA	AT3G12940.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os07g31440.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210085.1.S1_at	A	A1TS	POPTR_0011s14640	POPTR_0011s14640 (11)	scaffold_11:16977272-16977737(-) (11)	NA	NA	NA	AT5G45030.2	Trypsin family protein 	LOC_Os04g52479.3	"peptidase, trypsin-like serine and cysteine proteases, putative, expressed"	Medtr4g114550.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210086.1.S1_at	A	A1TS	POPTR_0011s14650	POPTR_0011s14650 (11)	scaffold_11:16990922-16991069(+) (11)	NA	Q6NVR9	ATPase family AAA domain-containing protein 3	AT5G16930.1	AAA-type ATPase family protein 	LOC_Os02g46990.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g107260.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.210086.1.S1_x_at	A	A1TS	POPTR_0011s14650	POPTR_0011s14650 (11)	scaffold_11:16990922-16991235(+) (11)	NA	Q6NVR9	ATPase family AAA domain-containing protein 3	AT5G16930.1	AAA-type ATPase family protein 	LOC_Os02g46990.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g107260.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.210088.1.S1_at	A	A1TS	POPTR_0011s14670	POPTR_0011s14670 (11)	scaffold_11:16997237-16997895(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210089.1.S1_at	A	A1TS	POPTR_0011s14680	POPTR_0011s14680 (11)	scaffold_11:16998778-16999632(-) (11)	NA	Q852K5	Zinc finger A20 and AN1 domain-containing stress-associated protein 6	AT3G12630.1	A20/AN1-like zinc finger family protein 	LOC_Os03g57890.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g069850.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.210090.1.S1_at	A	A1TS	POPTR_0011s14690	POPTR_0011s14690 (11)	scaffold_11:17002823-17004202(-) (11)	NA	P37518	GTP-dependent nucleic acid-binding protein engD	AT1G56050.1	GTP-binding protein-related 	LOC_Os03g56840.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210091.1.S1_at	A	A1TS	POPTR_0011s14700	POPTR_0011s14700 (11)	scaffold_11:17006751-17006972(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210092.1.S1_at	A	A1TS	POPTR_0011s14720	POPTR_0011s14720 (11)	scaffold_11:17022084-17022615(-) (11)	NA	Q9LM20	"Putative pumilio homolog 8, chloroplastic"	AT1G22240.1	pumilio 8 	LOC_Os11g37090.1	"pumilio-family RNA binding repeat domain containing protein, expressed"	Medtr5g072550.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.210093.1.S1_at	A	A1TS	POPTR_0011s14730	POPTR_0011s14730 (11)	scaffold_11:17027578-17028086(+) (11)	NA	NA	NA	AT3G28150.1	TRICHOME BIREFRINGENCE-LIKE 22 	LOC_Os04g39130.1	conserved hypothetical protein	Medtr5g036410.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210094.1.S1_at	A	A1TS	POPTR_0011s14740	POPTR_0011s14740 (11)	scaffold_11:17029564-17029760(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210095.1.S1_at	A	A1TS	POPTR_0011s14780	POPTR_0011s14780 (10)	scaffold_11:17055906-17056463(-) (10)	NA	A6QLC7	UPF0636 protein C4orf41 homolog	AT5G65950.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g48380.1	expressed protein	Medtr8g087200.1	ABC transporter related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210096.1.S1_at	A	A1TS	POPTR_0011s14800	POPTR_0011s14800 (11)	scaffold_11:17069254-17070243(+) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT1G13680.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os03g30130.2	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210097.1.S1_at	A	A1TS	POPTR_0011s14810	POPTR_0011s14810 (11)	scaffold_11:17076099-17076332(+) (11)	NA	P29057	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr8g087140.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
PtpAffx.210098.1.S1_at	A	A1TS	POPTR_0011s14840	POPTR_0011s14840 (11)	scaffold_11:17095933-17096022(+) (11)	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.210098.1.S1_x_at	A	A1TS	POPTR_0011s14840	POPTR_0011s14840 (11)	scaffold_11:17095792-17096128(+) (11)	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.210099.1.S1_at	A	A1TS	POPTR_0011s14850	POPTR_0011s14850 (9)	scaffold_11:17101593-17102219(-) (9)	NA	NA	NA	AT2G17410.2	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.210100.1.S1_at	A	A1TS	POPTR_0011s14860	POPTR_0011s14860 (11)	scaffold_11:17121044-17121769(+) (11)	NA	NA	NA	AT1G76520.2	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	CU179634_11.1	Auxin Efflux Carrier CU179634.6 45127-49222 H EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.210101.1.S1_at	A	A1TS	POPTR_0011s14870	POPTR_0011s14870 (11)	scaffold_11:17123494-17125310(-) (11)	NA	O14197	Uncharacterized transporter C5D6.04	AT1G76520.2	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	CU179634_11.1	Auxin Efflux Carrier CU179634.6 45127-49222 H EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.210102.1.S1_at	A	A1TS	POPTR_0011s14910	POPTR_0011s14910 (11)	scaffold_11:17149879-17150516(-) (11)	NA	P16313	Nodulin-21	AT3G43660.1	Vacuolar iron transporter (VIT) family protein 	LOC_Os02g43030.1	"integral membrane protein, putative, expressed"	Medtr1g125450.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210103.1.S1_at	A	A1TS	POPTR_0011s14980	POPTR_0011s14980 (11)	scaffold_11:17196081-17198035(-) (11)	NA	Q9V6G5	Tafazzin homolog	AT1G78690.1	Phospholipid/glycerol acyltransferase family protein 	LOC_Os04g57150.2	"tafazzin, putative, expressed"	Medtr8g086900.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.210104.1.S1_at	A	A1TS	POPTR_0011s15030	POPTR_0011s15030 (11)	scaffold_11:17219999-17220215(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g20090.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210105.1.S1_at	A	A1TS	POPTR_0011s15040	POPTR_0011s15040 (11)	scaffold_11:17224316-17224380(+) (11)	NA	NA	NA	AT1G33250.1	Protein of unknown function (DUF604) 	LOC_Os10g37260.1	"fringe-related protein, putative, expressed"	Medtr5g008160.1	Fringe-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210105.1.S1_s_at	A	A1TS	POPTR_0011s15040	POPTR_0011s15040 (11)	scaffold_11:17224594-17224811(+) (11)	NA	NA	NA	AT1G33250.1	Protein of unknown function (DUF604) 	LOC_Os10g37260.1	"fringe-related protein, putative, expressed"	Medtr5g008160.1	Fringe-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210106.1.S1_at	A	A1MS	POPTR_0011s15050	POPTR_0011s15050 (9)	scaffold_11:17236783-17237284(+) (9)	NA	Q39117	Trihelix transcription factor GT-2	AT1G33240.1	GT-2-like 1 	LOC_Os03g02240.1	"AT-GTL1, putative, expressed"	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210107.1.S1_s_at	A	A1TS	POPTR_0011s15150	POPTR_0011s15150 (11)	scaffold_11:17304584-17305313(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G07050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g081140.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.210109.1.S1_at	A	A1TS	POPTR_0011s15140	POPTR_0011s15140 (11)	scaffold_11:17301855-17302054(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G75500.2	Walls Are Thin 1 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g081140.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21011.2.A1_s_at	A	A1TS	POPTR_0017s09830	POPTR_0017s09830 (11)	scaffold_17:8494219-8494675(-) (11)	NA	NA	NA	AT1G27430.1	GYF domain-containing protein 	LOC_Os01g69990.1	"GYF domain containing protein, putative, expressed"	Medtr7g017890.1	"GYF domain-containing protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210111.1.S1_at	A	A1TS	POPTR_0011s15180	POPTR_0011s15180 (11)	scaffold_11:17313890-17314095(-) (11)	NA	P49793	Nuclear pore complex protein Nup98	AT1G10390.2	Nucleoporin autopeptidase 	LOC_Os12g06890.1	"OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed"	Medtr5g105600.1	"Peptidase S59, nucleoporin "	GO:0006810|transport	NA	GO:0005643|nuclear pore
PtpAffx.210112.1.S1_at	A	A1TS	POPTR_0011s15190	POPTR_0011s15190 (9)	scaffold_11:17322281-17322635(+) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os12g39330.1	"AP2 domain containing protein, expressed"	Medtr6g013450.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.210113.1.S1_at	A	A1TS	POPTR_0011s15200	POPTR_0011s15200 (11)	scaffold_11:17329530-17330260(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G30340.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os04g38430.2	"nodulin, putative, expressed"	Medtr1g046330.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.210115.1.S1_at	A	A1TS	POPTR_0011s15270	POPTR_0011s15270 (11)	scaffold_11:17381803-17381981(-) (11)	NA	Q8LMR9	B3 domain-containing protein Os03g0120900	AT2G46870.1	AP2/B3-like transcriptional factor family protein 	LOC_Os03g02900.1	"B3 DNA binding domain containing protein, expressed"	AC233685_81.1	Transcriptional factor B3 AC233685.2 344120-341990 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.210115.1.S1_x_at	A	A1TS	POPTR_0011s15270	POPTR_0011s15270 (11)	scaffold_11:17381806-17382089(-) (11)	NA	Q8LMR9	B3 domain-containing protein Os03g0120900	AT2G46870.1	AP2/B3-like transcriptional factor family protein 	LOC_Os03g02900.1	"B3 DNA binding domain containing protein, expressed"	AC233685_81.1	Transcriptional factor B3 AC233685.2 344120-341990 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.210116.1.S1_at	A	A1TS	POPTR_0011s15290	POPTR_0011s15290 (11)	scaffold_11:17402527-17403193(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210117.1.S1_at	A	A1TS	POPTR_0011s15300	POPTR_0011s15300 (11)	scaffold_11:17418729-17419386(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210118.1.S1_at	A	A1TS	POPTR_0011s15320	POPTR_0011s15320 (11)	scaffold_11:17434441-17435031(+) (11)	NA	Q96330	Flavonol synthase/flavanone 3-hydroxylase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.210120.1.S1_at	A	A1TS	POPTR_0011s15340	POPTR_0011s15340 (11)	scaffold_11:17450037-17451423(+) (11)	NA	Q96330	Flavonol synthase/flavanone 3-hydroxylase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.210121.1.S1_s_at	A	A2TS	POPTR_0011s15360	POPTR_0016s10450 (11)//POPTR_0011s15360 (11)	scaffold_11:17466359-17467174(+) (11)//scaffold_16:8702902-8703738(+) (11)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.210122.1.S1_at	A	A1TS	POPTR_0011s15420	POPTR_0011s15420 (11)	scaffold_11:17505239-17505481(-) (11)	NA	Q05964	"Naringenin,2-oxoglutarate 3-dioxygenase"	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.210123.1.S1_at	A	A1TS	POPTR_0011s15420	POPTR_0011s15420 (10)	scaffold_11:17509964-17510559(-) (10)	NA	Q05964	"Naringenin,2-oxoglutarate 3-dioxygenase"	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.210124.1.S1_at	A	A1TS	POPTR_0011s15430	POPTR_0011s15430 (10)	scaffold_11:17513045-17513512(-) (11)	NA	O65351	Subtilisin-like protease	AT4G10550.3	Subtilase family protein 	LOC_Os04g03796.1	"OsSub37 - Putative Subtilisin homologue, expressed"	Medtr4g132770.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210125.1.S1_at	A	A1TS	POPTR_0011s15450	POPTR_0011s15450 (11)	scaffold_11:17536265-17536991(-) (11)	NA	Q12955	Ankyrin-3	AT5G14230.1	"CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). "	LOC_Os02g25960.1	"ankyrin repeat family protein, putative, expressed"	Medtr8g142200.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210126.1.S1_at	A	A3TS	POPTR_0011s15490	POPTR_0011s15490 (11)//POPTR_0011s15500 (11)//POPTR_0011s15530 (9)	scaffold_11:17567398-17567481(-) (11)//scaffold_11:17585103-17585186(-) (11)//scaffold_11:17621267-17621330(-) (9)	NA	Q949X0	"Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic"	AT3G15850.1	fatty acid desaturase 5 	NA	NA	Medtr4g005600.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.210128.1.S1_at	A	A1TS	POPTR_0011s15540	POPTR_0011s15540 (11)	scaffold_11:17638578-17639065(+) (11)	NA	Q43784	"Granule-bound starch synthase 1, chloroplastic/amyloplastic"	AT1G32900.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g22930.3	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.210129.1.S1_at	A	A1TS	POPTR_0011s15550	POPTR_0011s15550 (11)	scaffold_11:17639343-17639478(-) (11)	NA	A2YU42	Cellulose synthase-like protein D2	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr1g047100.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210130.1.S1_at	A	A1TS	POPTR_0011s15580	POPTR_0011s15580 (10)	scaffold_11:17657924-17658433(-) (11)	NA	NA	NA	AT1G32810.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g14510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210131.1.S1_at	A	A1TS	POPTR_0011s15580	POPTR_0011s15580 (11)	scaffold_11:17664081-17664386(-) (11)	NA	NA	NA	AT1G32810.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g14510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210131.1.S1_x_at	A	A1TS	POPTR_0011s15580	POPTR_0011s15580 (11)	scaffold_11:17664081-17664369(-) (11)	NA	NA	NA	AT1G32810.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g14510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210132.1.S1_s_at	A	A1TS	POPTR_0011s15620	POPTR_0011s15620 (11)	scaffold_11:17695067-17695381(+) (11)	NA	NA	NA	AT1G64700.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g126420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210134.1.S1_at	A	A1TS	POPTR_0011s15710	POPTR_0011s15710 (11)	scaffold_11:17806620-17808010(+) (11)	NA	Q5E9Y6	Protein prune homolog	NA	NA	NA	NA	Medtr4g041560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210136.1.S1_at	A	A1TS	POPTR_0011s15740	POPTR_0011s15740 (11)	scaffold_11:17824727-17826363(-) (11)	NA	Q653V7	Probable alpha-glucosidase Os06g0675700	AT5G11720.1	Glycosyl hydrolases family 31  protein 	LOC_Os06g46284.1	"glycosyl hydrolase, family 31, putative, expressed"	Medtr5g066370.1	"Glycoside hydrolase, family 31 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210137.1.S1_at	A	A1TS	POPTR_0011s15750	POPTR_0011s15750 (11)	scaffold_11:17826615-17827182(-) (11)	NA	O04893	Alpha-glucosidase	AT5G11720.1	Glycosyl hydrolases family 31  protein 	LOC_Os06g46284.2	"glycosyl hydrolase, family 31, putative, expressed"	AC229699_4.1	"Glycoside hydrolase, family 31 AC229699.6 9352-14882 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.210138.1.S1_at	A	A1MS	POPTR_0011s15750	POPTR_0011s15750 (11)	scaffold_11:17831816-17832381(-) (11)	NA	O04893	Alpha-glucosidase	AT5G11720.1	Glycosyl hydrolases family 31  protein 	LOC_Os06g46284.2	"glycosyl hydrolase, family 31, putative, expressed"	AC229699_4.1	"Glycoside hydrolase, family 31 AC229699.6 9352-14882 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.210139.1.S1_s_at	A	A1TS	POPTR_0011s15780	POPTR_0011s15780 (11)	scaffold_11:17849032-17849586(-) (11)	NA	O04893	Alpha-glucosidase	AT5G11720.1	Glycosyl hydrolases family 31  protein 	LOC_Os06g46284.2	"glycosyl hydrolase, family 31, putative, expressed"	AC229699_4.1	"Glycoside hydrolase, family 31 AC229699.6 9352-14882 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.210140.1.S1_at	A	A1TS	POPTR_0011s15800	POPTR_0011s15800 (11)	scaffold_11:17865014-17868486(+) (10)	NA	Q0WTY4	Vacuolar protein sorting-associated protein 2 homolog 2	AT5G44560.1	SNF7 family protein 	LOC_Os03g43860.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	GO:0015031|protein transport	NA	NA
PtpAffx.210142.1.S1_at	A	A1MS	POPTR_0011s15840	POPTR_0011s15840 (10)	scaffold_11:17889741-17891075(+) (10)	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT4G20400.1	JUMONJI 14 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	Medtr4g137840.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; Zinc finger, C5HC2-type "	NA	NA	GO:0005634|nucleus
PtpAffx.210145.1.S1_at	A	A1TS	POPTR_0011s15890	POPTR_0011s15890 (11)	scaffold_11:17907643-17908515(-) (11)	NA	O65351	Subtilisin-like protease	AT4G20430.1	Subtilase family protein 	LOC_Os01g56320.1	"OsSub4 - Putative Subtilisin homologue, expressed"	Medtr4g137790.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA; "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.210146.1.S1_at	A	A1TS	POPTR_0011s15900	POPTR_0011s15900 (11)	scaffold_11:17917280-17920167(+) (11)	NA	Q9ZU38	Probable ribose-5-phosphate isomerase	AT5G44520.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g56869.1	"ribose-5-phosphate isomerase A, putative, expressed"	Medtr2g036830.1	Ribose 5-phosphate isomerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210147.1.S1_at	A	A1TS	POPTR_0011s15910	POPTR_0011s15910 (11)	scaffold_11:17925431-17925845(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.210148.1.S1_at	A	A1TS	POPTR_0011s16000	POPTR_0011s16000 (11)	scaffold_11:17980673-17982437(+) (11)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT3G25690.2	Hydroxyproline-rich glycoprotein family protein 	LOC_Os08g03560.2	"chloroplast unusual positioning protein, putative, expressed"	Medtr1g020430.1	"chloroplast unusual positioning 1B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210149.1.S1_at	A	A1TS	POPTR_0011s16020	POPTR_0011s16020 (11)	scaffold_11:17991225-17991785(-) (11)	NA	Q9STE1	Pentatricopeptide repeat-containing protein At4g21300	AT4G21300.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g56850.1	"pentatricopeptide, putative, expressed"	Medtr4g157180.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210150.1.S1_at	A	A1TS	POPTR_0011s16050	POPTR_0011s16050 (11)	scaffold_11:18027454-18027865(+) (11)	NA	Q9SA80	Probable WRKY transcription factor 14	AT1G30650.1	WRKY DNA-binding protein 14 	LOC_Os04g50920.1	"OsWRKY37 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088890.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.210151.1.S1_at	A	A1TS	POPTR_0011s16070	POPTR_0011s16070 (11)	scaffold_11:18037394-18038066(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210152.1.S1_at	A	A1TS	POPTR_0011s16090	POPTR_0011s16090 (11)	scaffold_11:18045134-18045786(-) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT4G20790.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g25540.1	"receptor-like protein kinase 2 precursor, putative, expressed"	AC235662_17.1	Protein kinase-like AC235662.1 75287-77207 H EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.210153.1.S1_at	A	A1TS	POPTR_0011s16100	POPTR_0011s16100 (11)	scaffold_11:18048160-18048770(-) (11)	NA	Q84RD0	Transcription factor bHLH53	AT2G34820.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os12g31430.1	helix-loop-helix DNA-binding domain containing protein	AC233682_19.1	Helix-loop-helix DNA-binding AC233682.2 73932-72796 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.210154.1.S1_at	A	A1MS	POPTR_0011s16110	POPTR_0011s16110 (9)	scaffold_11:18051937-18052588(-) (11)	NA	O64885	Protein BCCIP homolog	AT2G44510.1	CDK inhibitor P21 binding protein 	LOC_Os03g63690.1	"BCCIP, putative, expressed"	Medtr3g142570.1	"Protein BCCIP homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210155.1.S1_at	A	A1TS	POPTR_0011s16230	POPTR_0011s16230 (11)	scaffold_11:18143149-18143393(+) (11)	NA	Q94AJ5	Probable polygalacturonase At1g80170	AT1G23460.1	Pectin lyase-like superfamily protein 	LOC_Os02g03750.1	"polygalacturonase, putative, expressed"	Medtr2g126040.1	"Pectolytic enzyme, Pectin lyase fold "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.210156.1.S1_at	A	A1TS	POPTR_0015s09340	POPTR_0015s09340 (11)	scaffold_15:10556369-10556748(+) (11)	NA	NA	NA	AT5G14540.1	Protein of unknown function (DUF1421) 	LOC_Os05g07730.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210158.1.S1_at	A	A1TS	POPTR_0012s04160	POPTR_0012s04160 (11)	scaffold_12:3361821-3362490(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g42520.1	"receptor kinase, putative"	Medtr5g026330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210159.1.S1_at	A	A1TS	POPTR_0012s04120	POPTR_0012s04120 (11)	scaffold_12:3329369-3330318(-) (11)	NA	A8MQA3	Pentatricopeptide repeat-containing protein At4g21065	AT4G21065.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g07234.1	"pentatricopeptide, putative"	Medtr3g012790.1	"pentatricopeptide, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210161.1.S1_at	A	A1TS	POPTR_0012s04070	POPTR_0012s04070 (11)	scaffold_12:3288701-3289245(-) (11)	NA	Q9SY59	NF-X1-type zinc finger protein NFXL1	AT1G10170.1	NF-X-like 1 	LOC_Os06g14190.1	"NF-X1-type zinc finger protein, putative, expressed"	Medtr6g080720.1	"Zinc finger, NF-X1-type; Zinc finger, RING-type; Zinc finger, PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.210162.1.S1_at	A	A1TS	POPTR_0012s04060	POPTR_0012s04060 (9)	scaffold_12:3277866-3278772(-) (11)	NA	Q8W4I4	Potassium transporter 6	AT1G70300.1	K+ uptake permease 6 	LOC_Os07g48130.3	"potassium transporter, putative, expressed"	Medtr4g154610.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.210163.1.S1_at	A	A1TS	POPTR_0012s04050	POPTR_0012s04050 (11)	scaffold_12:3265481-3266032(-) (11)	NA	Q8H3P9	Potassium transporter 7	AT2G40540.2	potassium transporter 2 	LOC_Os07g47350.1	"potassium transporter, putative, expressed"	Medtr4g154610.1	K+ potassium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210164.1.S1_at	A	A1TS	POPTR_0012s04040	POPTR_0012s04040 (11)	scaffold_12:3251988-3253150(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g080690.1	KNOX1; KNOX2 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.210166.1.S1_at	A	A1TS	POPTR_0012s03990	POPTR_0012s03990 (10)	scaffold_12:3204086-3204328(-) (10)	POPTR_0003s02640 (7)	Q8T295	Pre-mRNA-processing-splicing factor 8 homolog	AT1G80070.1	Pre-mRNA-processing-splicing factor 	LOC_Os05g07050.1	"pre-mRNA-processing-splicing factor 8, putative, expressed"	Medtr2g126650.1	"Mov34/MPN/PAD-1; PRO8NT; PROCN; PRO, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210167.1.S1_at	A	A1TS	POPTR_0012s03960	POPTR_0012s03960 (11)	scaffold_12:3174175-3174599(+) (11)	NA	Q5PNY6	U-box domain-containing protein 21	AT5G37490.1	ARM repeat superfamily protein 	LOC_Os02g50460.1	"immediate-early fungal elicitor protein CMPG1, putative, expressed"	Medtr6g080480.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.210168.1.S1_at	A	A1TS	POPTR_0012s03950	POPTR_0012s03950 (11)	scaffold_12:3170576-3171020(+) (11)	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr6g080390.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.210169.1.S1_at	A	A1TS	POPTR_0012s03890	POPTR_0012s03890 (11)	scaffold_12:3111211-3111347(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210170.1.S1_at	A	A1TS	POPTR_0012s03850	POPTR_0012s03850 (11)	scaffold_12:3084430-3086686(+) (11)	NA	Q54C64	Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase	AT3G58130.2	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein 	LOC_Os04g58210.1	"N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210171.1.S1_at	A	A1TS	POPTR_0012s03840	POPTR_0012s03840 (9)	scaffold_12:3070922-3072444(-) (10)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT2G01900.1	DNAse I-like superfamily protein 	LOC_Os03g13520.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr1g046590.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210173.1.S1_at	A	A1TS	POPTR_0012s03820	POPTR_0012s03820 (11)	scaffold_12:3052763-3053257(-) (11)	NA	NA	NA	AT3G18310.1	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g13720.1	expressed protein	Medtr3g092170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210173.1.S1_s_at	A	A1TS	POPTR_0012s03820	POPTR_0012s03820 (11)	scaffold_12:3052909-3053404(-) (11)	NA	NA	NA	AT3G18310.1	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g13720.1	expressed protein	Medtr3g092170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210174.1.S1_at	A	A1TS	POPTR_0012s03810	POPTR_0012s03810 (11)	scaffold_12:3039468-3040054(+) (11)	NA	Q9LFL5	Pentatricopeptide repeat-containing protein At5g16860	AT5G16860.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g14130.3	"pentatricopeptide, putative, expressed"	AC233668_41.1	Pentatricopeptide repeat AC233668.2 172839-167990 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210175.1.S1_at	A	A1TS	POPTR_0012s03770	POPTR_0012s03770 (11)	scaffold_12:3012788-3012988(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT4G24660.1	homeobox protein 22 	LOC_Os05g50310.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr6g077190.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210175.1.S1_x_at	A	A1TS	POPTR_0012s03770	POPTR_0012s03770 (11)	scaffold_12:3012750-3012988(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT4G24660.1	homeobox protein 22 	LOC_Os05g50310.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr6g077190.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210176.1.S1_s_at	A	A1MS	POPTR_0012s03760	POPTR_0012s03760 (11)	scaffold_12:2994088-2994522(+) (11)	POPTR_0589s00200 (6)	NA	NA	AT2G01930.2	basic pentacysteine1 	LOC_Os10g02584.3	"GAGA-binding protein, putative, expressed"	Medtr4g151960.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210177.1.S1_at	A	A1TS	POPTR_0012s03750	POPTR_0012s03750 (11)	scaffold_12:2976779-2977333(+) (11)	NA	NA	NA	AT2G01930.2	basic pentacysteine1 	LOC_Os10g02584.3	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210179.1.S1_s_at	A	A1TS	POPTR_0012s03740	POPTR_0012s03740 (11)	scaffold_12:2955649-2955817(+) (11)	NA	NA	NA	AT1G14685.1	basic pentacysteine 2 	LOC_Os10g02584.3	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210180.1.S1_at	A	A1TS	POPTR_0012s03720	POPTR_0012s03720 (11)	scaffold_12:2911854-2912833(+) (11)	NA	B9SXY8	UPF0497 membrane protein 17	AT2G39530.1	Uncharacterised protein family (UPF0497) 	LOC_Os11g34730.1	"membrane associated DUF588 domain containing protein, putative"	Medtr6g077210.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210181.1.S1_at	A	A1TS	POPTR_0012s03700	POPTR_0012s03700 (11)	scaffold_12:2903624-2905610(-) (11)	NA	Q7G764	Probable NAD(P)H-dependent oxidoreductase 1	AT1G59960.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os03g13390.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g097780.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.210182.1.S1_at	A	A1TS	POPTR_0012s03690	POPTR_0012s03690 (11)	scaffold_12:2900429-2901690(+) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT5G37310.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210183.1.S1_s_at	A	A1TS	POPTR_0012s03660	POPTR_0012s03660 (11)	scaffold_12:2882063-2882327(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.2	Inorganic H pyrophosphatase family protein 	LOC_Os06g43660.3	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.2	Inorganic H+ pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210184.1.S1_at	A	A1TS	POPTR_0012s03650	POPTR_0012s03650 (11)	scaffold_12:2875755-2876462(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os03g51110.1	"MYB family transcription factor, putative, expressed"	Medtr6g078130.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210184.1.S1_x_at	A	A1TS	POPTR_0012s03650	POPTR_0012s03650 (11)	scaffold_12:2875755-2876462(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os03g51110.1	"MYB family transcription factor, putative, expressed"	Medtr6g078130.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210185.1.S1_at	A	A1TS	POPTR_0012s03640	POPTR_0012s03640 (11)	scaffold_12:2861055-2862562(+) (11)	NA	Q54Y85	DNA polymerase epsilon subunit 2	AT5G22110.1	DNA polymerase epsilon subunit B2 	LOC_Os05g06840.1	"POLE2A - Putative DNA polymerase epsilon complex subunit, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.210186.1.S1_at	A	A1TS	POPTR_0012s03630	POPTR_0012s03630 (11)	scaffold_12:2855251-2855595(+) (11)	NA	Q10251	Eukaryotic translation initiation factor 5B	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein 	LOC_Os05g51500.1	"eukaryotic translation initiation factor 5B, putative, expressed"	Medtr1g125430.1	Small GTP-binding protein domain; Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.210187.1.S1_at	A	A1TS	POPTR_0012s03550	POPTR_0012s03550 (11)	scaffold_12:2786460-2786991(-) (11)	NA	Q9FX31	Homeobox-leucine zipper protein HDG11	AT1G73360.1	homeodomain GLABROUS 11 	LOC_Os06g10600.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.210188.1.S1_s_at	A	A1TS	POPTR_0012s03540	POPTR_0012s03540 (11)	scaffold_12:2780041-2780580(-) (11)	NA	NA	NA	AT2G27660.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g41930.1	"DC1 domain-containing protein, putative"	Medtr7g112030.1	C1-like 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.210189.1.S1_at	A	A1TS	POPTR_0012s03520	POPTR_0012s03520 (11)	scaffold_12:2763763-2766772(+) (11)	NA	Q28IQ9	Cold-inducible RNA-binding protein	AT1G73530.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g49440.3	"RNA recognition motif containing protein, putative, expressed"	Medtr1g117240.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.210190.1.S1_at	A	A1TS	POPTR_0012s03510	POPTR_0012s03510 (11)	scaffold_12:2756009-2758524(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT3G17730.1	NAC domain containing protein 57 	LOC_Os09g38000.1	"no apical meristem protein, putative"	Medtr3g086750.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.210191.1.S1_at	A	A1TS	POPTR_0012s03500	POPTR_0012s03500 (11)	scaffold_12:2750783-2751337(-) (11)	NA	NA	NA	AT1G48405.1	Kinase interacting (KIP1-like) family protein 	LOC_Os03g01980.1	"KIP1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210192.1.S1_at	A	A1TS	POPTR_0012s03480	POPTR_0012s03480 (11)	scaffold_12:2742247-2742524(+) (11)	NA	Q7FAE1	Momilactone A synthase	AT4G03140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10000.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210193.1.S1_at	A	A1TS	POPTR_0012s03470	POPTR_0012s03470 (10)	scaffold_12:2738563-2738957(-) (10)	NA	Q9Z2D7	Methyl-CpG-binding domain protein 4	AT3G07930.3	DNA glycosylase superfamily protein 	LOC_Os09g01290.2	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	NA	NA	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
PtpAffx.210194.1.S1_at	A	A1TS	POPTR_0012s03440	POPTR_0012s03440 (11)	scaffold_12:2729941-2730418(+) (11)	NA	Q9WTW5	Solute carrier family 22 member 3	AT1G73220.1	organic cation/carnitine transporter1 	LOC_Os07g37510.1	"organic cation transporter-related, putative"	Medtr2g096180.1	Major facilitator superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210195.1.S1_at	A	A1TS	POPTR_0012s03420	POPTR_0012s03420 (11)	scaffold_12:2706993-2707611(+) (11)	NA	O24301	Sucrose synthase 2	AT1G73370.1	sucrose synthase 6 	LOC_Os04g24430.1	"sucrose synthase, putative, expressed"	Medtr5g084740.1	Sucrose synthase; N-6 Adenine-specific DNA methylase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.210196.1.S1_at	A	A1TS	POPTR_0012s03400	POPTR_0012s03400 (11)	scaffold_12:2688015-2688550(+) (11)	NA	NA	NA	AT5G54300.1	Protein of unknown function (DUF761) 	LOC_Os07g37620.1	"fiber expressed protein, putative, expressed"	Medtr2g095300.1	"Protein of unknown function DUF761, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210197.1.S1_at	A	A1TS	POPTR_0012s03350	POPTR_0012s03350 (11)	scaffold_12:2653850-2654178(-) (11)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.210198.1.S1_at	A	A1TS	POPTR_0012s03340	POPTR_0012s03340 (11)	scaffold_12:2650294-2650598(+) (11)	NA	Q14684	Ribosomal RNA processing protein 1 homolog B	AT5G20600.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). "	LOC_Os04g56350.1	"nucleolar protein,Nop52 containing protein, expressed"	Medtr8g147770.1	"Nucleolar, Nop52 "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	"GO:0030688|""preribosome, small subunit precursor"""
PtpAffx.210199.1.S1_at	A	A1TS	POPTR_0012s03330	POPTR_0012s03330 (9)	scaffold_12:2643908-2644557(+) (11)	NA	Q03091	Extracellular ribonuclease	NA	NA	LOC_Os02g26400.2	"nuclease, EndA/NucM family protein, expressed"	Medtr8g130270.1	Endonuclease I 	NA	GO:0004518|nuclease activity	NA
PtpAffx.210199.1.S1_s_at	A	A1TS	POPTR_0012s03330	POPTR_0012s03330 (11)	scaffold_12:2644057-2644506(+) (11)	NA	Q03091	Extracellular ribonuclease	NA	NA	LOC_Os02g26400.2	"nuclease, EndA/NucM family protein, expressed"	Medtr8g130270.1	Endonuclease I 	NA	GO:0004518|nuclease activity	NA
PtpAffx.210200.1.S1_at	A	A1TA	POPTR_0012s00910	POPTR_0012s00910 (11)	scaffold_12:586635-586812(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210201.1.S1_at	A	A1TS	POPTR_0012s00930	POPTR_0012s00930 (11)	scaffold_12:597808-597933(-) (11)	NA	NA	NA	AT3G19180.2	paralog of ARC6 	LOC_Os04g57920.1	"OsFBX154 - F-box domain containing protein, expressed"	Medtr6g089760.1	"ARC6H, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210202.1.S1_at	A	A1TS	POPTR_0012s00950	POPTR_0012s00950 (11)	scaffold_12:617073-618027(-) (11)	NA	NA	NA	AT3G19180.1	paralog of ARC6 	LOC_Os04g57920.1	"OsFBX154 - F-box domain containing protein, expressed"	Medtr6g089760.1	"ARC6H, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210203.1.S1_at	A	A1TS	POPTR_0012s00970	POPTR_0012s00970 (11)	scaffold_12:642197-642639(-) (11)	NA	NA	NA	AT5G52870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g12640.2	expressed protein	Medtr1g126380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210204.1.S1_at	A	A1TS	POPTR_0012s00990	POPTR_0012s00990 (11)	scaffold_12:661827-663128(-) (11)	NA	Q9FLX3	F-box protein At5g52880	AT5G52880.1	F-box family protein 	LOC_Os05g45040.1	"OsFBX170 - F-box domain containing protein, expressed"	Medtr1g125970.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210205.1.S1_x_at	A	A1MS	POPTR_0012s01000	POPTR_0012s01000 (10)	scaffold_12:665710-666287(-) (10)	NA	Q6AZT2	Spastin	AT1G64110.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g50750.1	"AAA family ATPase, putative, expressed"	Medtr5g009960.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.210206.1.S1_at	A	A1TS	POPTR_0012s01000	POPTR_0012s01000 (11)	scaffold_12:666621-667550(-) (11)	NA	Q6AZT2	Spastin	AT1G64110.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g50750.1	"AAA family ATPase, putative, expressed"	Medtr5g009960.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.210206.1.S1_x_at	A	A1TS	POPTR_0012s01000	POPTR_0012s01000 (11)	scaffold_12:666616-667550(-) (11)	NA	Q6AZT2	Spastin	AT1G64110.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g50750.1	"AAA family ATPase, putative, expressed"	Medtr5g009960.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.210207.1.S1_at	A	A1TS	POPTR_0012s01010	POPTR_0012s01010 (11)	scaffold_12:687403-688194(+) (11)	NA	NA	NA	AT5G24030.1	SLAC1 homologue 3 	LOC_Os01g43460.1	"C4-dicarboxylate transporter/malic acid transport protein, expressed"	Medtr6g043970.1	C4-dicarboxylate transporter/malic acid transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210208.1.S1_at	A	A1TS	POPTR_0012s01020	POPTR_0012s01020 (11)	scaffold_12:693568-694082(-) (11)	NA	NA	NA	AT5G52900.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g125930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210209.1.S1_s_at	A	A2TS	POPTR_0012s01030	POPTR_0012s01030 (11)//POPTR_0012s01040 (11)	scaffold_12:711637-712109(+) (11)//scaffold_12:724846-725318(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21021.1.S1_a_at	A	A1TS	POPTR_0003s05010	POPTR_0003s05010 (11)	scaffold_3:6184224-6184534(+) (11)	NA	Q8S3D1	Transcription factor bHLH68	AT4G29100.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g14010.1	"ethylene-responsive protein related, putative, expressed"	Medtr2g122580.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21021.2.S1_at	A	A1TS	POPTR_0001s18660	POPTR_0001s18660 (11)	scaffold_1:15723020-15723355(-) (11)	NA	Q8S3D1	Transcription factor bHLH68	AT4G29100.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g14010.1	"ethylene-responsive protein related, putative, expressed"	Medtr2g122580.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210211.1.S1_at	A	A1MS	POPTR_0012s01050	POPTR_0012s01050 (10)	scaffold_12:735037-735674(+) (10)	NA	Q9FLV4	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080	AT5G24080.1	Protein kinase superfamily protein 	LOC_Os07g36780.1	"S-domain receptor-like protein kinase, putative, expressed"	Medtr1g125840.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210212.1.S1_at	A	A1MS	POPTR_0012s01080	POPTR_0012s01080 (11)	scaffold_12:754756-754929(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os02g17400.1	"leucine rich repeat protein, putative"	Medtr4g137570.1	"HcrVf3 protein, related "	NA	GO:0005515|protein binding	NA
PtpAffx.210212.1.S1_s_at	A	A1TS	POPTR_0012s01080	POPTR_0012s01080 (11)	scaffold_12:754383-754705(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os02g17400.1	"leucine rich repeat protein, putative"	Medtr4g137570.1	"HcrVf3 protein, related "	NA	GO:0005515|protein binding	NA
PtpAffx.210213.1.S1_at	A	A1TS	POPTR_0012s01090	POPTR_0012s01090 (11)	scaffold_12:759633-760781(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210214.1.S1_at	A	A1TS	POPTR_0012s01110	POPTR_0012s01110 (11)	scaffold_12:770102-770499(+) (11)	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT5G65770.3	little nuclei4 	LOC_Os01g56140.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210216.1.S1_at	A	A1TS	POPTR_0012s01170	POPTR_0012s01170 (11)	scaffold_12:804382-804510(-) (11)	NA	NA	NA	AT5G52950.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g12250.1	expressed protein	Medtr8g068100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210217.1.S1_at	A	A1TS	POPTR_0012s01260	POPTR_0012s01260 (11)	scaffold_12:889806-890307(+) (11)	NA	Q9SUE3	Ethylene-responsive transcription factor CRF4	AT4G27950.1	cytokinin response factor 4 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr3g124710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.210218.1.S1_at	A	A1TS	POPTR_0012s01270	POPTR_0012s01270 (9)	scaffold_12:905050-905428(-) (11)	NA	NA	NA	AT2G37400.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210219.1.S1_s_at	A	A1TS	POPTR_0012s01290	POPTR_0012s01290 (11)	scaffold_12:922541-922875(+) (11)	NA	NA	NA	AT3G57450.1	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210220.1.S1_at	A	A1TS	POPTR_0012s01300	POPTR_0012s01300 (11)	scaffold_12:923431-923960(-) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210221.1.S1_at	A	A1TS	POPTR_0012s01320	POPTR_0012s01320 (9)	scaffold_12:932918-933768(-) (9)	NA	B9I534	UPF0497 membrane protein 3	AT5G15290.1	Uncharacterised protein family (UPF0497) 	LOC_Os06g12500.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210222.1.S1_at	A	A1TS	POPTR_0012s01340	POPTR_0012s01340 (11)	scaffold_12:951914-954621(+) (11)	POPTR_0015s06120 (6)	Q4V8K4	Solute carrier family 25 member 39	AT4G27940.1	manganese tracking factor for mitochondrial SOD2 	LOC_Os08g29720.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g124670.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210223.1.S1_at	A	A1TS	POPTR_0012s01350	POPTR_0012s01350 (11)	scaffold_12:956691-957259(-) (11)	NA	Q9M373	Arabinogalactan peptide 20	AT3G61640.1	arabinogalactan protein 20 	NA	NA	Medtr3g124660.1	Protein of unknown function DUF1070 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210223.1.S1_x_at	A	A1TS	POPTR_0012s01350	POPTR_0012s01350 (11)	scaffold_12:956676-957259(-) (11)	NA	Q9M373	Arabinogalactan peptide 20	AT3G61640.1	arabinogalactan protein 20 	NA	NA	Medtr3g124660.1	Protein of unknown function DUF1070 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210224.1.S1_at	A	A1TS	POPTR_0012s01370	POPTR_0012s01370 (11)	scaffold_12:980264-982250(+) (11)	NA	Q700C7	Transcription factor SPEECHLESS	AT5G53210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g15760.1	helix-loop-helix DNA-binding domain containing protein	Medtr3g124650.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.210225.1.S1_at	A	A1TS	POPTR_0012s01380	POPTR_0012s01380 (11)	scaffold_12:986047-986539(-) (11)	NA	Q9FL62	Probable WRKY transcription factor 30	AT5G24110.1	WRKY DNA-binding protein 30 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.210226.1.S1_at	A	A1TS	POPTR_0012s01390	POPTR_0012s01390 (9)	scaffold_12:1004038-1004518(+) (11)	NA	Q9FFE3	"Pentatricopeptide repeat-containing protein At5g16420, mitochondrial"	AT5G16420.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os06g03530.1	"pentatricopeptide, putative, expressed"	Medtr7g067920.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210227.1.S1_at	A	A1TS	POPTR_0012s01400	POPTR_0012s01400 (11)	scaffold_12:1011617-1012564(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT5G53190.1	Nodulin MtN3 family protein 	LOC_Os01g12130.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g124570.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210228.1.S1_at	A	A1MS	POPTR_0012s01430	POPTR_0012s01430 (9)	scaffold_12:1033359-1033835(-) (9)	NA	P26683	RNA polymerase sigma factor rpoD	AT5G24120.1	sigma factor E 	LOC_Os05g50930.1	"RNA polymerase sigma factor, putative, expressed"	Medtr3g124610.1	Sigma-70 region 2; Winged helix repressor DNA-binding; ; 	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.210230.1.S1_at	A	A1TS	POPTR_0012s01500	POPTR_0012s01500 (11)	scaffold_12:1124643-1125483(+) (11)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210233.1.S1_s_at	A	A1MS	POPTR_0012s01520	POPTR_0012s01520 (11)	scaffold_12:1142478-1142562(-) (11)//scaffold_288:44372-44456(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210235.1.S1_at	A	A1TS	POPTR_0012s01540	POPTR_0012s01540 (11)	scaffold_12:1167524-1168824(+) (11)	NA	Q9FGM0	"ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial"	AT5G53170.1	FTSH protease 11 	LOC_Os01g43150.1	"OsFtsH9  FtsH protease, homologue of AtFtsH11, expressed"	Medtr3g139890.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.210236.1.S1_at	A	A1TS	POPTR_0012s01570	POPTR_0012s01570 (10)	scaffold_12:1202218-1203387(-) (10)	NA	O50401	Trehalose-phosphate phosphatase	AT1G35910.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os02g51680.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr3g124490.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.210237.1.S1_at	A	A1TS	POPTR_0012s01610	POPTR_0012s01610 (11)	scaffold_12:1227760-1228245(-) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G61430.1	NAC domain containing protein 100 	LOC_Os04g38720.1	"no apical meristem protein, putative, expressed"	Medtr6g013180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.210238.1.S1_at	A	A1TS	POPTR_0012s01650	POPTR_0012s01650 (11)	scaffold_12:1252196-1253236(+) (11)	NA	Q94K18	Uncharacterized protein At4g29660	AT4G29660.1	embryo defective 2752 	LOC_Os05g46280.1	expressed protein	Medtr7g046500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210239.1.S1_at	A	A1TS	POPTR_0012s01660	POPTR_0012s01660 (11)	scaffold_12:1256605-1258049(+) (11)	NA	NA	NA	AT3G61700.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.3	"plant-specific domain TIGR01589 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210240.1.S1_a_at	A	A1TS	POPTR_0012s01670	POPTR_0012s01670 (11)	scaffold_12:1260766-1260920(+) (11)//scaffold_12:1260957-1261111(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210241.1.S1_at	A	A1TS	POPTR_0012s01690	POPTR_0012s01690 (11)	scaffold_12:1287961-1288096(+) (11)	NA	O65717	Cyclic nucleotide-gated ion channel 1	AT5G53130.1	cyclic nucleotide gated channel 1 	LOC_Os06g33570.1	"cyclic nucleotide-gated ion channel 1, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.210242.1.S1_at	A	A1TS	POPTR_0012s01710	POPTR_0012s01710 (11)	scaffold_12:1297258-1297486(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210243.1.S1_at	A	A1TS	POPTR_0012s01720	POPTR_0012s01720 (11)	scaffold_12:1298252-1298983(-) (11)	NA	O08309	Pyruvate kinase	AT3G49160.1	pyruvate kinase family protein 	LOC_Os03g46910.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210246.1.S1_s_at	A	A2TS	POPTR_0012s01750	POPTR_0012s01750 (11)//POPTR_0012s01760 (11)	scaffold_12:1329555-1329996(+) (11)//scaffold_12:1336530-1336971(+) (11)//scaffold_12:1354070-1354492(+) (9)//scaffold_197:1473-1943(-) (9)	POPTR_0012s01770 (8)//POPTR_0197s00200 (6)//POPTR_0197s00220 (6)	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr4g098520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210247.1.S1_at	A	A1TS	POPTR_0012s01830	POPTR_0012s01830 (11)	scaffold_12:1370271-1370691(-) (11)	NA	Q9FL42	Putative RING-H2 finger protein ATL69	AT5G53110.1	RING/U-box superfamily protein 	LOC_Os08g34550.1	"RING-H2 finger protein, putative, expressed"	Medtr3g124280.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210248.1.S1_at	A	A1TS	POPTR_0012s01840	POPTR_0012s01840 (11)	scaffold_12:1379131-1379717(-) (11)	NA	P0CH01	Putative RING-H2 finger protein ATL21A	AT5G53110.1	RING/U-box superfamily protein 	LOC_Os01g02290.2	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr3g124280.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210249.1.S1_at	A	A1TS	POPTR_0012s01860	POPTR_0012s01860 (11)	scaffold_12:1396153-1396793(-) (11)	NA	Q03460	"Glutamate synthase [NADH], amyloplastic"	AT5G53460.3	NADH-dependent glutamate synthase 1 	LOC_Os01g48960.1	"glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process||GO:0044281|small molecule metabolic process	GO:0015930|glutamate synthase activity||GO:0050660|FAD binding	NA
PtpAffx.210250.1.S1_at	A	A1TS	POPTR_0012s01875	POPTR_0012s01875 (11)	scaffold_12:1436454-1436901(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210253.1.S1_s_at	A	A1TS	POPTR_0012s01890	POPTR_0012s01890 (11)	scaffold_12:1475560-1475611(-) (11)	NA	Q91DM0	Genome polyprotein	NA	NA	LOC_Os08g18210.1	"retrotransposon protein, putative, unclassified"	AC234026_1.1	RNA-directed DNA polymerase (Reverse transcriptase) AC234026.1 2154-4412 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006278|RNA-dependent DNA replication	GO:0003964|RNA-directed DNA polymerase activity||GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.210253.1.S1_x_at	A	A1TS	POPTR_0012s01890	POPTR_0012s01890 (9)	scaffold_12:1475192-1475907(-) (9)	NA	Q91DM0	Genome polyprotein	NA	NA	LOC_Os08g18210.1	"retrotransposon protein, putative, unclassified"	AC234026_1.1	RNA-directed DNA polymerase (Reverse transcriptase) AC234026.1 2154-4412 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006278|RNA-dependent DNA replication	GO:0003964|RNA-directed DNA polymerase activity||GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.210254.1.S1_at	A	A1TS	POPTR_0012s01910	POPTR_0012s01910 (11)	scaffold_12:1497925-1498502(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210256.1.S1_at	A	A1TS	POPTR_0061s00210	POPTR_0061s00210 (11)	scaffold_61:45805-45870(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210257.1.S1_at	A	A1TS	POPTR_0012s01940	POPTR_0012s01940 (11)	scaffold_12:1539919-1540305(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210258.1.S1_at	A	A1TS	POPTR_0061s00200	POPTR_0061s00200 (11)	scaffold_61:29585-30008(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os09g13410.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210260.1.S1_at	A	A1TS	POPTR_0012s01960	POPTR_0012s01960 (11)	scaffold_12:1575914-1576380(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G60470.1	Plant protein of unknown function (DUF247) 	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210261.1.S1_at	A	A1TS	POPTR_0012s01970	POPTR_0012s01970 (11)	scaffold_12:1583384-1584336(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.210262.1.S1_x_at	A	A2TS	POPTR_0012s02000	POPTR_0012s02000 (11)//POPTR_0146s00200 (11)	scaffold_12:1604847-1606638(+) (11)//scaffold_146:2540-4322(-) (11)	NA	Q12874	Splicing factor 3A subunit 3	AT5G06160.1	splicing factor-related 	LOC_Os03g50850.1	"ZOS3-17 - C2H2 zinc finger protein, expressed"	Medtr3g124240.1	"Zinc finger, C2H2-type matrin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210263.1.S1_s_at	A	A2TS	POPTR_0012s02010	POPTR_0012s02010 (11)//POPTR_0012s02030 (11)	scaffold_12:1616745-1617016(-) (11)//scaffold_12:1632400-1632671(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.210265.1.S1_s_at	A	A4TS	POPTR_0012s02040	POPTR_0012s02060 (11)//POPTR_0012s02040 (11)//POPTR_0012s02070 (11)//POPTR_0012s02050 (10)	scaffold_12:1646536-1646740(-) (11)//scaffold_12:1649052-1649260(-) (10)//scaffold_12:1678025-1678233(-) (11)//scaffold_12:1692109-1692313(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.210265.1.S1_x_at	A	A1TS	POPTR_0012s02040	POPTR_0012s02040 (9)	scaffold_12:1646394-1649282(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.210266.1.S1_s_at	A	A1TS	POPTR_0219s00210	POPTR_0219s00210 (11)	scaffold_12:1689144-1689326(-) (11)//scaffold_219:8101-8283(-) (11)	NA	P51074	Annexin-like protein RJ4	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210267.1.S1_x_at	A	A1TS	POPTR_0012s02070	POPTR_0012s02070 (11)	scaffold_12:1691967-1692335(-) (11)	POPTR_0012s02040 (7)	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.210268.1.S1_s_at	A	A1TS	POPTR_0012s02080	POPTR_0012s02080 (11)	scaffold_12:1699461-1700099(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.21027.1.A1_at	A	A1TS	POPTR_0010s12930	POPTR_0010s12930 (10)	scaffold_10:12848022-12849868(-) (10)	NA	Q9XI60	Lipid phosphate phosphatase 2	AT1G15080.1	lipid phosphate phosphatase 2 	LOC_Os08g27040.1	"lipid phosphatase protein, putative, expressed"	Medtr7g093870.1	"Phosphoesterase, PA-phosphatase related "	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.210270.1.S1_at	A	A1TS	POPTR_0012s02090	POPTR_0012s02090 (11)	scaffold_12:1710150-1712486(-) (11)	NA	P49063	Exopolygalacturonase clone GBGA483	AT1G78400.1	Pectin lyase-like superfamily protein 	LOC_Os01g66710.1	"polygalacturonase, putative"	Medtr2g074020.1	"Glycoside hydrolase, family 28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210271.1.S1_at	A	A1TS	POPTR_0012s02100	POPTR_0012s02100 (11)	scaffold_12:1712547-1717557(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.210272.1.S1_at	A	A1TS	POPTR_0012s02110	POPTR_0012s02110 (11)	scaffold_12:1734840-1735073(+) (11)	NA	NA	NA	AT5G53440.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g124190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210273.1.S1_at	A	A1TS	POPTR_0012s02140	POPTR_0012s02140 (11)	scaffold_12:1781360-1781571(-) (11)	NA	O35685	Nuclear migration protein nudC	AT5G53400.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210274.1.S1_at	A	A1TS	POPTR_0012s02150	POPTR_0012s02150 (11)	scaffold_12:1785291-1786339(-) (11)	NA	Q93ZR6	O-acyltransferase WSD1	AT5G53390.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os05g48260.1	"wax synthase, putative, expressed"	Medtr1g009270.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210275.1.S1_at	A	A1TS	POPTR_0012s02180	POPTR_0012s02180 (11)	scaffold_12:1830815-1831299(-) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT5G24240.1	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr3g124030.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.210276.1.S1_at	A	A1TS	POPTR_0012s02190	POPTR_0012s02190 (11)	scaffold_12:1835368-1835888(-) (11)	NA	Q8GXC7	F-box/kelch-repeat protein At3g06240	AT3G06240.1	F-box family protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr4g032800.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210277.1.S1_at	A	A1TS	POPTR_0012s02200	POPTR_0012s02200 (11)	scaffold_12:1844599-1846361(-) (11)	NA	Q80YA7	Dipeptidyl peptidase 8	AT5G24260.1	prolyl oligopeptidase family protein 	LOC_Os02g18850.1	"OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr3g124020.1	"Peptidase S9, prolyl oligopeptidase active site region; Peptidase S9B, dipeptidylpeptidase IV N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	GO:0016020|membrane
PtpAffx.210278.1.S1_at	A	A1TS	POPTR_0012s02220	POPTR_0012s02220 (11)	scaffold_12:1856449-1856610(+) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210279.1.S1_at	A	A1TS	POPTR_0012s02240	POPTR_0012s02240 (11)	scaffold_12:1876115-1876693(+) (11)	NA	Q9M3A8	Pentatricopeptide repeat-containing protein At3g49240	AT3G49240.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g24570.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g123960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210280.1.S1_at	A	A1TS	POPTR_0012s02270	POPTR_0012s02270 (11)	scaffold_12:1891267-1891768(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210281.1.S1_at	A	A1TS	POPTR_0012s02290	POPTR_0012s02290 (11)	scaffold_12:1897591-1898504(-) (11)	NA	Q9Y2Y1	DNA-directed RNA polymerase III subunit RPC10	AT4G07950.1	"DNA-directed RNA polymerase, subunit M, archaeal "	LOC_Os02g45120.2	expressed protein	Medtr5g030020.1	"Zinc finger, C2H2-type; DNA-directed RNA polymerase, subunit C11/M/9 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0003899|DNA-directed RNA polymerase activity||GO:0008270|zinc ion binding	NA
PtpAffx.210282.1.S1_at	A	A1TS	POPTR_0012s02300	POPTR_0012s02300 (9)	scaffold_12:1906016-1907439(-) (9)	NA	NA	NA	AT3G49250.1	defective in meristem silencing 3 	LOC_Os01g13404.1	"ATP binding protein, putative, expressed"	Medtr3g123840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210283.1.S1_at	A	A1TS	POPTR_0012s02320	POPTR_0012s02320 (11)	scaffold_12:1924169-1925550(-) (11)	NA	NA	NA	AT5G24280.1	gamma-irradiation and mitomycin c induced 1 	NA	NA	Medtr1g009170.1	"ATP-binding region, ATPase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210284.1.S1_at	A	A1TS	POPTR_0012s02330	POPTR_0012s02330 (11)	scaffold_12:1950121-1950300(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G49260.3	IQ-domain 21 	LOC_Os03g44610.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g123810.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210284.1.S1_s_at	A	A1TS	POPTR_0012s02330	POPTR_0012s02330 (11)	scaffold_12:1949957-1950165(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G49260.3	IQ-domain 21 	LOC_Os03g44610.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g123810.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210285.1.S1_at	A	A1TS	POPTR_0012s02380	POPTR_0012s02380 (11)	scaffold_12:1972808-1973135(+) (11)	NA	NA	NA	AT5G53030.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr1g009040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210286.1.S1_at	A	A1TS	POPTR_0012s02390	POPTR_0012s02390 (11)	scaffold_12:1975561-1976494(-) (11)	NA	Q9LVU8	Protein RKD4	AT5G53040.1	RWP-RK domain-containing protein 	LOC_Os01g37100.1	"RWP-RK domain-containing protein, putative, expressed"	Medtr3g123690.1	Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210287.1.S1_at	A	A1TS	POPTR_0012s02400	POPTR_0012s02400 (11)	scaffold_12:1983708-1983985(+) (11)	NA	Q9M3A3	Protein ABIL2	AT3G49290.2	ABL interactor-like protein 2 	LOC_Os01g37110.1	"ABIL2, putative, expressed"	Medtr3g123660.1	"Protein ABIL2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210287.1.S1_s_at	A	A1TS	POPTR_0012s02400	POPTR_0012s02400 (11)	scaffold_12:1983738-1984743(+) (11)	NA	Q9M3A3	Protein ABIL2	AT3G49290.2	ABL interactor-like protein 2 	LOC_Os01g37110.1	"ABIL2, putative, expressed"	Medtr3g123660.1	"Protein ABIL2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210289.1.S1_at	A	A1TS	POPTR_0012s02470	POPTR_0012s02470 (11)	scaffold_12:2036188-2036904(+) (11)	NA	Q03685	Luminal-binding protein 5	AT5G42020.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210290.1.S1_at	A	A1MS	POPTR_0012s02490	POPTR_0012s02490 (9)	scaffold_12:2043001-2043741(-) (9)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT5G24318.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr1g008920.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.210291.1.S1_x_at	A	A1TS	POPTR_0012s02520	POPTR_0012s02520 (11)	scaffold_12:2062714-2063188(-) (11)	NA	Q6LA54	Uncharacterized WD repeat-containing protein C3H5.08c	AT5G24320.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g02440.2	"WD repeat-containing protein 44, putative, expressed"	Medtr1g008870.1	"WD-40 repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210292.1.S1_at	A	A1TS	POPTR_0012s02530	POPTR_0012s02530 (11)	scaffold_12:2082443-2084090(-) (11)	NA	Q9FNE9	Histone-lysine N-methyltransferase ATXR6	AT5G24330.1	ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 	LOC_Os02g03030.1	"ATXR, putative"	Medtr1g008770.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210293.1.S1_at	A	A1TS	POPTR_0012s02540	POPTR_0012s02540 (11)	scaffold_12:2091961-2092628(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210294.1.S1_at	A	A1TS	POPTR_0012s02550	POPTR_0012s02550 (11)	scaffold_12:2098550-2099101(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210295.1.S1_at	A	A1TS	POPTR_0012s02590	POPTR_0012s02590 (11)	scaffold_12:2129597-2130187(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210296.1.S1_at	A	A1TS	POPTR_0012s02600	POPTR_0012s02600 (11)	scaffold_12:2131609-2132294(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210298.1.S1_s_at	A	A2TS	POPTR_0001s21670	POPTR_0001s21670 (11)//POPTR_0012s02670 (11)	scaffold_1:20225400-20225570(-) (11)//scaffold_12:2187421-2187591(-) (11)	NA	Q8BKU8	Transmembrane protein 87B	AT2G01070.1	Lung seven transmembrane receptor family protein 	LOC_Os11g34360.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr2g007860.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.210299.1.S1_at	A	A1TS	POPTR_0012s02680	POPTR_0012s02680 (11)	scaffold_12:2189682-2190133(-) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.2103.1.A1_s_at	A	A1TS	POPTR_0009s16980	POPTR_0009s16980 (11)	scaffold_9:12818018-12818442(-) (11)	NA	NA	NA	AT4G35320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g48470.1	expressed protein	Medtr5g106850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210300.1.S1_at	A	A1TS	POPTR_0012s02690	POPTR_0012s02690 (11)	scaffold_12:2218615-2219052(+) (11)	NA	Q5TYW4	Neuroblastoma-amplified sequence	AT5G24350.1	CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g13150.1	expressed protein	Medtr3g123460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210301.1.S1_at	A	A1TS	POPTR_0012s02710	POPTR_0012s02710 (11)	scaffold_12:2225921-2226501(-) (11)	NA	Q9ZWC5	Scarecrow-like protein 18	AT1G55580.1	GRAS family transcription factor 	LOC_Os06g40780.1	"MONOCULM 1, putative, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210301.1.S1_x_at	A	A1TS	POPTR_0012s02710	POPTR_0012s02710 (11)	scaffold_12:2225921-2226501(-) (11)	NA	Q9ZWC5	Scarecrow-like protein 18	AT1G55580.1	GRAS family transcription factor 	LOC_Os06g40780.1	"MONOCULM 1, putative, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210302.1.S1_at	A	A1TS	POPTR_0012s02720	POPTR_0012s02720 (11)	scaffold_12:2241082-2241613(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210304.1.S1_x_at	A	A1TS	POPTR_0012s02750	POPTR_0012s02750 (11)	scaffold_12:2259642-2259777(-) (11)//scaffold_12:2269627-2269762(-) (11)	POPTR_0012s02740 (6)	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g103960.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.210305.1.S1_at	A	A1TS	POPTR_2517s00200	POPTR_2517s00200 (11)	scaffold_2517:656-891(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210305.1.S1_s_at	A	A2TS	POPTR_0012s02780	POPTR_0012s02780 (11)//POPTR_2517s00200 (11)	scaffold_12:2289040-2289499(-) (11)//scaffold_2517:175-634(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210306.1.S1_at	A	A1TS	POPTR_0012s02820	POPTR_0012s02820 (10)	scaffold_12:2303248-2303801(-) (10)	NA	NA	NA	AT5G24500.1	unknown protein; Has 133 Blast hits to 129 proteins in 40 species: Archae - 2; Bacteria - 0; Metazoa - 60; Fungi - 5; Plants - 29; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). 	NA	NA	Medtr3g122760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210307.1.S1_at	A	A1TS	POPTR_0012s02880	POPTR_0012s02880 (11)	scaffold_12:2335639-2336985(+) (11)	NA	NA	NA	AT3G49400.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g50690.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g071370.1	"transducin family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210308.1.S1_at	A	A1TS	POPTR_0012s02930	POPTR_0012s02930 (11)	scaffold_12:2372427-2373123(-) (11)	NA	P30222	"Small heat shock protein, chloroplastic"	AT4G27670.1	heat shock protein 21 	LOC_Os03g14180.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr3g122960.2	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210309.1.S1_at	A	A1TS	POPTR_0012s02940	POPTR_0012s02940 (11)	scaffold_12:2377088-2377643(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT1G01110.2	IQ-domain 18 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210310.1.S1_at	A	A1TS	POPTR_0012s02980	POPTR_0012s02980 (11)	scaffold_12:2397128-2398172(-) (11)	NA	Q9FGR0	Cleavage and polyadenylation specificity factor subunit 1	AT5G51660.1	cleavage and polyadenylation specificity factor 160 	LOC_Os04g18010.1	"cleavage and polyadenylation specificity factor subunit 1, putative, expressed"	Medtr4g137930.1	"CPSF A subunit, C-terminal; WD40-like "	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.210311.1.S1_at	A	A1TS	POPTR_0012s02990	POPTR_0012s02990 (11)	scaffold_12:2423269-2423891(+) (11)	NA	Q9SSL9	Leucine-rich repeat receptor-like protein kinase PEPR1	AT1G73080.1	PEP1 receptor 1 	LOC_Os10g06760.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g112220.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210312.1.S1_at	A	A1TS	POPTR_0012s03040	POPTR_0012s03040 (11)	scaffold_12:2448725-2450407(+) (11)	NA	P53681	CDPK-related protein kinase	AT5G24430.1	Calcium-dependent protein kinase (CDPK) family protein 	LOC_Os06g50030.1	"CAMK_CAMK_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g123190.1	Protein kinase; EF-Hand type 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210313.1.S1_at	A	A1TS	POPTR_0012s03060	POPTR_0012s03060 (11)	scaffold_12:2460484-2461009(-) (11)	NA	NA	NA	AT1G57680.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g36630.1	expressed protein	Medtr3g123210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210314.1.S1_at	A	A1TS	POPTR_0012s03080	POPTR_0012s03080 (9)	scaffold_12:2473470-2473726(+) (11)	NA	P46897	Homeobox-leucine zipper protein ATHB-7	AT2G46680.1	homeobox 7 	LOC_Os09g35910.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g029340.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.210315.1.S1_at	A	A1TS	POPTR_0012s03090	POPTR_0012s03090 (11)	scaffold_12:2475403-2477043(+) (11)	NA	NA	NA	AT5G53580.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g37330.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210316.1.S1_x_at	A	A1TS	POPTR_0012s03100	POPTR_0012s03100 (11)	scaffold_12:2478517-2479550(-) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT5G17260.1	NAC domain containing protein 86 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr2g085850.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.210317.1.S1_at	A	A1TS	POPTR_0012s03120	POPTR_0012s03120 (11)	scaffold_12:2478332-2483649(-) (11)	POPTR_0012s03100 (7)//POPTR_0012s03130 (6)	Q84K00	NAC domain-containing protein 78	AT5G17260.1	NAC domain containing protein 86 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr2g085850.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.210317.1.S1_x_at	A	A1TS	POPTR_0012s03120	POPTR_0012s03120 (11)	scaffold_12:2478332-2483649(-) (11)	POPTR_0012s03100 (7)	Q84K00	NAC domain-containing protein 78	AT5G17260.1	NAC domain containing protein 86 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr2g085850.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.210318.1.S1_x_at	A	A1TS	POPTR_0012s03130	POPTR_0012s03130 (11)	scaffold_12:2478478-2490529(-) (11)	NA	O49255	NAC domain-containing protein 29	AT5G17260.1	NAC domain containing protein 86 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr2g085850.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.210319.1.S1_at	A	A1TS	POPTR_1526s00200	POPTR_1526s00200 (11)	scaffold_1526:375-1370(-) (11)	POPTR_0012s03160 (7)	NA	NA	AT5G41940.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210321.1.S1_s_at	A	A1TS	POPTR_0012s03255	POPTR_0012s03255 (11)	scaffold_12:2572707-2573183(-) (11)	NA	P19954	"30S ribosomal protein 1, chloroplastic"	AT5G24490.1	"30S ribosomal protein, putative "	NA	NA	Medtr3g122720.1	Sigma 54 modulation protein/ribosomal protein S30EA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210323.1.S1_s_at	A	A1MS	POPTR_0011s01958	POPTR_0011s01958 (9)	scaffold_1:4669758-4670153(-) (11)//scaffold_1:11798874-11799269(+) (11)//scaffold_1:37467821-37468216(-) (11)//scaffold_11:1610059-1610284(+) (9)//scaffold_17:4152531-4152926(+) (11)//scaffold_18:281340-281565(-) (9)//scaffold_18:10603603-10603998(+) (10)//scaffold_19:1250462-1250857(-) (11)//scaffold_3:11656817-11657212(-) (11)//scaffold_39:25755-26126(-) (11)//scaffold_5:14169115-14169510(+) (11)//scaffold_6:19977015-19977410(+) (10)	NA	Q40392	TMV resistance protein N	AT1G27170.1	transmembrane receptors;ATP binding 	NA	NA	Medtr5g038650.1	TIR 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.210324.1.S1_x_at	A	A1TS	POPTR_0039s00260	POPTR_0039s00260 (11)	scaffold_39:34338-34483(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G71400.1	receptor like protein 12 	LOC_Os12g12120.1	"verticillium wilt disease resistance protein precursor, putative, expressed"	Medtr5g093720.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.210325.1.S1_at	A	A1TS	POPTR_0039s00270	POPTR_0039s00270 (11)	scaffold_39:38641-39190(-) (11)//scaffold_39:45635-46080(-) (10)	POPTR_0039s00280 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210329.1.S1_at	A	A1TS	POPTR_0046s00390	POPTR_0046s00390 (11)	scaffold_46:176588-177014(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210330.1.S1_s_at	A	A1TS	POPTR_0046s00400	POPTR_0046s00400 (11)	scaffold_46:179296-179516(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210332.1.S1_at	A	A1TS	POPTR_0012s03190	POPTR_0012s03190 (9)	scaffold_12:2535102-2536012(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210333.1.S1_at	A	A1TS	POPTR_0012s03210	POPTR_0012s03210 (11)	scaffold_12:2537756-2537797(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G05660.1	receptor like protein 33 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g072640.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.210335.1.S1_s_at	A	A2TS	POPTR_0011s07900	POPTR_0039s00300 (10)//POPTR_0011s07900 (10)	scaffold_11:8816457-8816490(-) (10)//scaffold_11:8823951-8823984(-) (10)//scaffold_39:97463-97496(-) (10)//scaffold_726:2779-2812(+) (10)	NA	Q9LHP4	Receptor-like protein kinase 2	AT3G11080.1	receptor like protein 35 	LOC_Os06g38830.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g008970.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.210337.1.S1_at	A	A1TS	POPTR_0541s00200	POPTR_0541s00200 (11)	scaffold_541:2538-3003(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210338.1.S1_at	A	A1TS	POPTR_0046s00360	POPTR_0046s00360 (11)	scaffold_11:8791768-8791811(-) (11)//scaffold_11:8838053-8838096(-) (11)//scaffold_39:139570-139613(-) (11)//scaffold_46:143506-151638(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g093750.1	Ribosomal protein S2 	NA	GO:0005515|protein binding	NA
PtpAffx.210340.1.S1_at	A	A1TS	POPTR_0012s00830	POPTR_0012s00830 (11)	scaffold_1:38997003-38997486(+) (10)//scaffold_12:500898-501771(-) (11)//scaffold_19:6993044-6993499(+) (10)//scaffold_19:7004272-7004727(+) (10)//scaffold_4:482650-483078(+) (10)//scaffold_4:12938862-12939317(-) (9)//scaffold_432:8605-8760(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210347.1.S1_at	A	A1MS	POPTR_0012s00810	POPTR_0012s00810 (11)	scaffold_12:470913-470995(-) (11)	POPTR_0046s00260 (8)//POPTR_0039s00340 (6)//POPTR_0046s00330 (6)	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210347.1.S1_x_at	A	A1MS	POPTR_0012s00810	POPTR_0012s00810 (11)	scaffold_12:470883-470995(-) (11)	POPTR_0046s00260 (8)	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210348.1.S1_x_at	A	A2TS	POPTR_0046s00260	POPTR_0046s00260 (11)//POPTR_0012s00810 (9)	scaffold_12:470702-470806(-) (9)//scaffold_46:55668-55781(+) (11)	POPTR_0039s00250 (7)	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123350.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210349.1.S1_s_at	A	A1TS	POPTR_0012s00800	POPTR_0012s00800 (11)	scaffold_12:467720-467762(+) (11)//scaffold_46:58187-58229(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os12g12010.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g093720.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.21035.1.S1_a_at	A	A1TS	POPTR_0006s28030	POPTR_0006s28030 (11)	scaffold_6:25890692-25891146(+) (11)	NA	Q5RDY2	Transmembrane 9 superfamily member 4	AT5G10840.1	Endomembrane protein 70 protein family 	LOC_Os09g38530.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr1g016840.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.21035.2.S1_a_at	A	A2TS	POPTR_0006s28030	POPTR_0006s28030 (11)//POPTR_0018s02610 (11)	scaffold_18:2375294-2375328(+) (11)//scaffold_6:25890648-25890682(+) (11)	NA	Q5RDY2	Transmembrane 9 superfamily member 4	AT5G10840.1	Endomembrane protein 70 protein family 	LOC_Os09g38530.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr1g016840.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.21035.2.S1_at	A	A1TS	POPTR_0018s02610	POPTR_0018s02610 (11)	scaffold_18:2375369-2375724(+) (11)	NA	Q5RDY2	Transmembrane 9 superfamily member 4	AT5G10840.1	Endomembrane protein 70 protein family 	LOC_Os09g38530.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr1g016840.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.210351.1.S1_at	A	A1TS	POPTR_0012s00780	POPTR_0012s00780 (10)	scaffold_12:443135-444178(-) (10)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G07050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os12g18960.1	"integral membrane protein DUF6 containing protein, expressed"	Medtr5g077460.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.210352.1.S1_at	A	A1TS	POPTR_0012s00770	POPTR_0012s00770 (11)	scaffold_12:434252-435022(-) (11)	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT5G54130.2	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr3g122310.1	Endonuclease/exonuclease/phosphatase; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210353.1.S1_at	A	A1TS	POPTR_0012s00740	POPTR_0012s00740 (11)	scaffold_12:416124-416731(-) (11)	NA	NA	NA	AT5G24580.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g64340.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g122410.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.210353.1.S1_x_at	A	A1TS	POPTR_0012s00740	POPTR_0012s00740 (11)	scaffold_12:415750-416731(-) (11)	NA	NA	NA	AT5G24580.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g64340.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g122410.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.210354.1.S1_at	A	A1TS	POPTR_0012s00730	POPTR_0012s00730 (11)	scaffold_12:411052-412090(-) (11)	NA	NA	NA	AT4G27590.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g49260.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g077820.1	"copper-binding protein-related, putative "	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.210355.1.S1_x_at	A	A1TS	POPTR_0012s00720	POPTR_0012s00720 (11)	scaffold_12:399472-399896(-) (11)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210358.1.S1_s_at	A	A3TS	POPTR_0073s00210	POPTR_0073s00210 (11)//POPTR_0276s00200 (11)//POPTR_0010s25110 (9)	scaffold_10:20955565-20956088(-) (9)//scaffold_276:5213-5768(-) (11)//scaffold_73:24750-25305(+) (11)	NA	Q66GR0	Fasciclin-like arabinogalactan protein 17	AT5G06390.1	FASCICLIN-like arabinogalactan protein 17 precursor 	LOC_Os03g57460.1	"fasciclin domain containing protein, expressed"	Medtr2g104610.1	Beta-Ig-H3/fasciclin; Myristoyl-CoA:protein N-myristoyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210359.1.S1_at	A	A1TS	POPTR_0012s00610	POPTR_0012s00610 (11)	scaffold_12:301860-302459(+) (11)	NA	NA	NA	AT5G53730.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os12g06260.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr3g122630.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.210360.1.S1_at	A	A1TS	POPTR_0012s00580	POPTR_0012s00580 (11)	scaffold_12:288242-288534(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210361.1.S1_x_at	A	A1TS	POPTR_0012s00560	POPTR_0012s00560 (9)	scaffold_12:26462-33572(-) (10)//scaffold_12:271610-272022(-) (9)	POPTR_0012s00250 (7)//POPTR_0012s00240 (7)//POPTR_0012s03280 (7)	Q9C9H7	Receptor-like protein 12	AT3G28890.2	receptor like protein 43 	LOC_Os12g10930.1	"NL0E, putative"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.210362.1.S1_s_at	A	A3TS	POPTR_0012s00230	POPTR_0012s00490 (11)//POPTR_0012s00230 (11)//POPTR_0012s00550 (11)	scaffold_12:20069-20125(-) (11)//scaffold_12:173929-173985(-) (11)//scaffold_12:260792-260848(-) (11)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210364.1.S1_s_at	A	A4TS	POPTR_0012s00260	POPTR_0012s00260 (11)//POPTR_0012s00550 (10)//POPTR_0012s00490 (9)//POPTR_0012s00230 (9)	scaffold_12:17914-19391(-) (9)//scaffold_12:40581-43359(-) (11)//scaffold_12:171736-173251(-) (9)//scaffold_12:258816-260339(-) (10)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210365.1.S1_x_at	A	A1TS	POPTR_0012s00500	POPTR_0012s00500 (11)	scaffold_12:179267-179785(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G28890.2	receptor like protein 43 	LOC_Os12g10930.1	"NL0E, putative"	Medtr7g008970.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.210366.1.S1_s_at	A	A1TS	POPTR_0012s00470	POPTR_0012s00470 (11)	scaffold_12:13713-13864(-) (9)//scaffold_12:167250-167517(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210367.1.S1_at	A	A3TS	POPTR_0012s00230	POPTR_0012s00490 (11)//POPTR_0012s00230 (11)//POPTR_0015s00400 (10)	scaffold_12:17636-17892(-) (11)//scaffold_12:171458-171714(-) (11)//scaffold_15:226905-227177(-) (10)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210369.1.S1_at	A	A1TS	POPTR_0012s00450	POPTR_0012s00450 (11)	scaffold_12:152816-154529(-) (11)	NA	P73625	MutS2 protein	AT5G54090.1	"DNA mismatch repair protein MutS, type 2 "	LOC_Os10g36530.2	"mutS domain V family protein, expressed"	Medtr5g077310.1	"DNA mismatch repair protein, eukaryotic MSH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210370.1.S1_at	A	A1TS	POPTR_0012s00430	POPTR_0012s00430 (11)	scaffold_12:144241-145221(-) (11)	NA	P28493	Pathogenesis-related protein 5	AT5G24620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g32280.1	"thaumatin, putative"	Medtr5g077390.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210371.1.S1_at	A	A1TS	POPTR_0012s00420	POPTR_0012s00420 (11)	scaffold_12:142563-143975(+) (11)	NA	Q9FLU1	DNA-binding protein BIN4	AT5G24630.2	double-stranded DNA binding 	LOC_Os02g05440.1	expressed protein	Medtr3g122060.1	"BIN4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210372.1.S1_s_at	A	A2TS	POPTR_0012s00300	POPTR_0012s00380 (11)//POPTR_0012s00300 (11)	scaffold_12:72363-72964(-) (11)//scaffold_12:116633-117234(-) (11)	NA	NA	NA	AT3G49590.1	Autophagy-related protein 13 	LOC_Os02g43040.1	expressed protein	Medtr5g077400.1	"Aminoacyl-tRNA synthetase, class I "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210373.1.S1_at	A	A2TS	POPTR_0012s00290	POPTR_0012s00290 (11)//POPTR_0012s00370 (10)	scaffold_12:67383-68462(-) (11)//scaffold_12:111669-112761(-) (10)	NA	Q3SWY8	Zinc finger with UFM1-specific peptidase domain protein	AT5G24680.1	"Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 "	LOC_Os02g01710.4	"peptidase family C78 domain containing protein, expressed"	Medtr5g077410.1	Protein of unknown function DUF1671 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210375.1.S1_at	A	A1TS	POPTR_0003s00750	POPTR_0003s00750 (9)	scaffold_12:87275-87571(-) (10)//scaffold_3:528885-529181(-) (9)	NA	NA	NA	AT4G27870.1	Vacuolar iron transporter (VIT) family protein 	LOC_Os06g01440.1	"integral membrane protein, putative, expressed"	Medtr5g077300.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210378.1.S1_at	A	A1TS	POPTR_0012s04210	POPTR_0012s04210 (11)	scaffold_12:3428104-3428394(-) (11)	NA	NA	NA	AT4G32605.1	Mitochondrial glycoprotein family protein 	LOC_Os01g56460.1	"mitochondrial glycoprotein, putative, expressed"	Medtr5g100350.1	Mitochondrial glycoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210379.1.S1_at	A	A1TS	POPTR_0012s04240	POPTR_0012s04240 (11)	scaffold_12:3471495-3471995(-) (11)	NA	Q9M3D6	ABC transporter G family member 19	AT3G55130.1	white-brown complex homolog 19 	LOC_Os09g23640.1	ABC-2 type transporter domain containing protein	Medtr4g154670.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.210382.1.S1_at	A	A1TS	POPTR_0012s04260	POPTR_0012s04260 (11)	scaffold_12:3496796-3497834(-) (11)	NA	Q6P4K6	Serine/threonine-protein kinase 11-interacting protein	AT3G17920.1	Outer arm dynein light chain 1 protein 	LOC_Os03g12160.1	"leucine-rich repeat family protein, putative, expressed"	Medtr4g154700.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.210383.1.S1_at	A	A1TS	POPTR_0012s04270	POPTR_0012s04270 (10)	scaffold_12:3502491-3504482(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210384.1.S1_at	A	A1TS	POPTR_0012s04320	POPTR_0012s04320 (11)	scaffold_12:3533954-3534518(+) (11)	NA	P93008	DEAD-box ATP-dependent RNA helicase 21	AT2G33730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g50090.4	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	AC233669_14.1	"Helicase, C-terminal; ; AC233669.2 54226-56692 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.210385.1.S1_at	A	A1TS	POPTR_0012s04350	POPTR_0012s04350 (11)	scaffold_12:3584442-3584800(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210387.1.S1_at	A	A1TS	POPTR_0012s04380	POPTR_0012s04380 (11)	scaffold_12:3610869-3612529(-) (11)	NA	NA	NA	AT5G06310.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g39280.1	"ATPOT1, putative, expressed"	Medtr4g154790.1	Telomere end binding protein 	GO:0060249|anatomical structure homeostasis||GO:0000723|telomere maintenance||GO:0044260|cellular macromolecule metabolic process	GO:0003677|DNA binding	"GO:0000784|""nuclear chromosome, telomeric region"""
PtpAffx.210388.1.S1_at	A	A1TS	POPTR_0012s04390	POPTR_0012s04390 (11)	scaffold_12:3619518-3620667(-) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT1G48570.1	zinc finger (Ran-binding) family protein 	LOC_Os03g50120.1	"zinc finger family protein, putative, expressed"	Medtr6g083530.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.210389.1.S1_at	A	A1TS	POPTR_0012s04410	POPTR_0012s04410 (11)	scaffold_12:3627116-3631504(+) (11)	NA	Q7ZUC7	Prostaglandin E synthase 2	AT5G42150.1	Glutathione S-transferase family protein 	LOC_Os04g17050.1	"glutaredoxin family protein, expressed"	Medtr6g083520.1	"Glutathione S-transferase, C-terminal-like; Thioredoxin fold "	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.210390.1.S1_at	A	A1TS	POPTR_0012s04450	POPTR_0012s04450 (11)	scaffold_12:3660487-3661234(-) (11)	NA	NA	NA	AT1G48580.1	unknown protein; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os07g15500.1	expressed protein	Medtr4g154850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210391.1.S1_at	A	A1TS	POPTR_0012s04510	POPTR_0012s04510 (9)	scaffold_12:3796696-3796740(+) (9)	NA	Q6X7K0	WUSCHEL-related homeobox 1	AT3G18010.1	WUSCHEL related homeobox 1 	LOC_Os05g02730.1	"homeobox domain containing protein, expressed"	Medtr4g154980.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.210391.1.S1_x_at	A	A1TS	POPTR_0012s04510	POPTR_0012s04510 (11)	scaffold_12:3796696-3796800(+) (11)	NA	Q6X7K0	WUSCHEL-related homeobox 1	AT3G18010.1	WUSCHEL related homeobox 1 	LOC_Os05g02730.1	"homeobox domain containing protein, expressed"	Medtr4g154980.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.210392.1.S1_a_at	A	A1TS	POPTR_0012s04530	POPTR_0012s04530 (11)	scaffold_12:3816648-3816692(-) (11)//scaffold_12:3816759-3816803(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210392.1.S1_at	A	A1TS	POPTR_0012s04530	POPTR_0012s04530 (11)	scaffold_12:3816604-3817435(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210393.1.S1_s_at	A	A1TS	POPTR_0012s04540	POPTR_0012s04540 (11)	scaffold_12:3826980-3827440(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g030870.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210395.1.S1_at	A	A1TS	POPTR_0012s04570	POPTR_0012s04570 (11)	scaffold_12:3855728-3857410(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G73660.1	protein tyrosine kinase family protein 	LOC_Os06g12590.1	"protein kinase, putative, expressed"	Medtr4g155190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210396.1.S1_at	A	A1TS	POPTR_0012s04570	POPTR_0012s04570 (11)	scaffold_12:3857941-3861076(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G73660.1	protein tyrosine kinase family protein 	LOC_Os06g12590.1	"protein kinase, putative, expressed"	Medtr4g155190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210397.1.S1_at	A	A1TS	POPTR_0012s04600	POPTR_0012s04600 (11)	scaffold_12:3922961-3923202(-) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT2G36800.1	don-glucosyltransferase 1 	LOC_Os01g08110.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr7g124180.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210397.1.S1_s_at	A	A1TS	POPTR_0012s04600	POPTR_0012s04600 (11)	scaffold_12:3923216-3923523(-) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT2G36800.1	don-glucosyltransferase 1 	LOC_Os01g08110.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr7g124180.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210398.1.S1_at	A	A1TS	POPTR_0012s04610	POPTR_0012s04610 (11)	scaffold_12:3941582-3942117(-) (11)	NA	Q9SY02	Pentatricopeptide repeat-containing protein At4g02750	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g15800.1	"tetratricopeptide-like helical, putative"	Medtr4g155250.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210399.1.S1_at	A	A1TS	POPTR_0012s04690	POPTR_0012s04690 (11)	scaffold_12:4025362-4026139(-) (11)	NA	Q23490	Peroxidase mlt-7	AT1G73680.1	alpha dioxygenase 	LOC_Os12g26290.2	"alpha-DOX2, putative, expressed"	Medtr4g155460.1	Animal haem peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.2104.1.S1_at	A	A1TS	POPTR_0001s37550	POPTR_0001s37550 (9)	scaffold_1:36515365-36515895(+) (9)	NA	Q8LBL1	Calcium-activated outward-rectifying potassium channel 1	AT5G55630.2	Outward rectifying potassium channel protein 	LOC_Os03g54100.2	"potassium channel protein, putative, expressed"	Medtr5g103230.1	"Calcium-activated outward-rectifying potassium channel 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210400.1.S1_at	A	A1TS	POPTR_0012s04750	POPTR_0012s04750 (11)	scaffold_12:4135586-4136293(+) (11)	NA	Q9FKD0	Probable S-adenosylmethionine-dependent methyltransferase At5g37970	AT1G15125.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g56950.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.210402.1.S1_s_at	A	A1TS	POPTR_0012s04790	POPTR_0012s04790 (11)	scaffold_12:4172081-4174406(+) (11)	NA	P29620	Cyclin-dependent kinase D-1	AT1G18040.1	cyclin-dependent kinase D1;3 	LOC_Os05g32600.1	"cyclin-dependent kinase D-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210405.1.S1_at	A	A1TS	POPTR_0012s04810	POPTR_0012s04810 (11)	scaffold_12:4190646-4191448(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G52450.1	MATE efflux family protein 	LOC_Os06g29844.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.210406.1.S1_at	A	A1TS	POPTR_0233s00200	POPTR_0233s00200 (10)	scaffold_233:8323-8981(-) (10)	NA	NA	NA	AT3G18180.1	Glycosyltransferase family 61 protein 	LOC_Os06g49300.1	"glycosyltransferase protein, putative, expressed"	Medtr4g155630.4	Protein of unknown function DUF563 	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.210407.1.S1_at	A	A1TS	POPTR_0012s04860	POPTR_0012s04860 (11)	scaffold_12:4264643-4265162(+) (11)	NA	Q54CL2	T-complex protein 1 subunit delta	AT3G18190.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os02g22780.1	"T-complex protein, putative, expressed"	Medtr4g156440.1	"Haem peroxidase, plant/fungal/bacterial; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210408.1.S1_at	A	A1TS	POPTR_0012s04870	POPTR_0012s04870 (11)	scaffold_12:4285196-4287796(+) (11)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT3G18210.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.210410.1.S1_at	A	A1TS	POPTR_0012s04930	POPTR_0012s04930 (11)	scaffold_12:4411117-4411511(-) (11)	NA	Q40392	TMV resistance protein N	AT1G27170.2	transmembrane receptors;ATP binding 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.210411.1.S1_at	A	A1TS	POPTR_0012s04970	POPTR_0012s04970 (11)	scaffold_12:4464494-4465056(+) (11)	NA	NA	NA	AT2G01190.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os01g04650.1	"PB1 domain containing protein, expressed"	Medtr8g096190.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210412.1.S1_at	A	A1TS	POPTR_0012s04990	POPTR_0012s04990 (11)	scaffold_12:4492142-4493739(+) (11)	NA	NA	NA	AT1G73750.1	"Uncharacterised conserved protein UCP031088, alpha/beta hydrolase "	LOC_Os01g49760.1	expressed protein	Medtr6g086800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210413.1.S1_at	A	A1TS	POPTR_0012s05000	POPTR_0012s05000 (9)	scaffold_12:4496034-4496066(-) (9)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT1G73760.1	RING/U-box superfamily protein 	LOC_Os01g49770.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g096250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210413.1.S1_s_at	A	A1TS	POPTR_0012s05000	POPTR_0012s05000 (11)	scaffold_12:4495914-4496740(-) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT1G73760.1	RING/U-box superfamily protein 	LOC_Os01g49770.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g096250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210414.1.S1_at	A	A1TS	POPTR_0012s05010	POPTR_0012s05010 (10)	scaffold_12:4517371-4517660(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210415.1.S1_s_at	A	A1TS	POPTR_0012s05030	POPTR_0012s05030 (11)	scaffold_12:4528153-4528855(-) (11)	NA	Q9LJQ5	Reticulon-like protein B9	AT3G18260.1	Reticulon family protein 	LOC_Os05g47690.1	"reticulon domain containing protein, putative, expressed"	Medtr5g097480.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.210416.1.S1_at	A	A1TS	POPTR_0012s05040	POPTR_0012s05040 (11)	scaffold_12:4533929-4534383(+) (11)	NA	O34508	L-Ala-D/L-Glu epimerase	AT3G18270.1	"cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene "	LOC_Os01g04630.1	"muconate cycloisomerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210416.1.S1_s_at	A	A1TS	POPTR_0012s05040	POPTR_0012s05040 (11)	scaffold_12:4534730-4534982(+) (11)	NA	O34508	L-Ala-D/L-Glu epimerase	AT3G18270.1	"cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene "	LOC_Os01g04630.1	"muconate cycloisomerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210417.1.S1_at	A	A1TS	POPTR_0012s05060	POPTR_0012s05060 (11)	scaffold_12:4558807-4559501(-) (11)	NA	Q54NP8	Kinesin-related protein 4	AT1G18370.1	ATP binding microtubule motor family protein 	LOC_Os01g33040.1	"kinesin motor domain containing protein, expressed"	Medtr8g133190.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.210418.1.S1_at	A	A1TS	POPTR_0012s05070	POPTR_0012s05070 (11)	scaffold_12:4567514-4567897(+) (11)	NA	NA	NA	AT5G38260.1	Protein kinase superfamily protein 	NA	NA	Medtr4g157930.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210419.1.S1_at	A	A1TS	POPTR_0012s05090	POPTR_0012s05090 (11)	scaffold_12:4584758-4585300(-) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.1	Protein kinase superfamily protein 	LOC_Os01g04409.1	"OsWAK1 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210420.1.S1_at	A	A1MS	POPTR_0012s05100	POPTR_0012s05100 (11)	scaffold_12:4588579-4589039(-) (11)	NA	Q5BQ05	Uncharacterized protein At1g18380	AT5G38260.1	Protein kinase superfamily protein 	NA	NA	Medtr4g157930.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210420.1.S1_x_at	A	A1MS	POPTR_0012s05100	POPTR_0012s05100 (11)	scaffold_12:4588579-4589094(-) (11)	NA	Q5BQ05	Uncharacterized protein At1g18380	AT5G38260.1	Protein kinase superfamily protein 	NA	NA	Medtr4g157930.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210421.1.S1_at	A	A1TS	POPTR_0012s05110	POPTR_0012s05110 (11)	scaffold_12:4595330-4596105(-) (11)	NA	NA	NA	AT1G73805.1	Calmodulin binding protein-like 	LOC_Os01g04280.1	"calmodulin binding protein, putative, expressed"	Medtr4g157940.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210422.1.S1_at	A	A1TS	POPTR_0012s05130	POPTR_0012s05130 (11)	scaffold_12:4610961-4611548(-) (11)	NA	Q9C744	AP-3 complex subunit delta	AT1G48760.3	delta-adaptin 	LOC_Os01g32880.1	"AP-3 complex subunit delta, putative, expressed"	Medtr4g158040.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.210423.1.S1_at	A	A1TS	POPTR_0012s05140	POPTR_0012s05140 (11)	scaffold_12:4641947-4643432(+) (11)	NA	O14099	Uncharacterized RING finger protein C2F3.16	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.210424.1.S1_at	A	A1TS	POPTR_0012s05150	POPTR_0012s05150 (11)	scaffold_12:4656775-4657096(+) (11)	NA	NA	NA	AT3G18295.1	Protein of unknown function (DUF1639) 	LOC_Os01g49410.1	expressed protein	Medtr6g027950.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210425.1.S1_at	A	A1TS	POPTR_0012s05160	POPTR_0012s05160 (11)	scaffold_12:4666191-4666628(-) (11)	NA	NA	NA	AT1G48780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18300.1); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	NA	NA	Medtr4g158110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210426.1.S1_at	A	A1TS	POPTR_0012s05170	POPTR_0012s05170 (11)	scaffold_12:4676415-4677800(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g158100.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210427.1.S1_at	A	A1TS	POPTR_0089s00210	POPTR_0089s00210 (11)	scaffold_89:40489-40926(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210428.1.S1_at	A	A1TS	POPTR_0012s05220	POPTR_0012s05220 (11)	scaffold_12:4811028-4811653(+) (11)	NA	NA	NA	AT1G48840.1	Plant protein of unknown function (DUF639) 	LOC_Os10g03830.1	expressed protein	Medtr6g028160.2	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210429.1.S1_at	A	A1TS	POPTR_0012s05230	POPTR_0012s05230 (11)	scaffold_12:4812713-4813285(-) (11)	NA	NA	NA	AT3G18360.1	VQ motif-containing protein 	NA	NA	Medtr6g028170.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210430.1.S1_at	A	A1TS	POPTR_0012s05250	POPTR_0012s05250 (11)	scaffold_12:4838828-4839148(+) (11)	NA	O95294	RasGAP-activating-like protein 1	AT3G18370.1	C2 domain-containing protein 	LOC_Os01g03820.1	"C2 domain containing protein, putative, expressed"	Medtr6g028380.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210431.1.S1_at	A	A1TS	POPTR_0012s05270	POPTR_0012s05270 (11)	scaffold_12:4856298-4857551(-) (11)	NA	NA	NA	AT1G73840.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os05g43780.1	"ESP1, putative, expressed"	Medtr4g158160.1	"proline-rich protein precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210432.1.S1_at	A	A1TS	POPTR_0012s05280	POPTR_0012s05280 (11)	scaffold_12:4869372-4871027(-) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT3G18400.1	NAC domain containing protein 58 	LOC_Os03g42630.1	"No apical meristem protein, putative, expressed"	Medtr6g028410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.210433.1.S1_at	A	A1TS	POPTR_0012s05290	POPTR_0012s05290 (11)	scaffold_12:4877869-4878753(-) (11)	POPTR_0015s07960 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210434.1.S1_at	A	A1TS	POPTR_0012s05310	POPTR_0012s05310 (11)	scaffold_12:4917535-4918000(+) (11)	NA	NA	NA	AT1G73850.1	Protein of unknown function (DUF1666) 	LOC_Os01g03870.1	expressed protein	Medtr6g028420.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210435.1.S1_at	A	A1TS	POPTR_0012s05330	POPTR_0012s05330 (11)	scaffold_12:4939142-4939494(-) (11)	NA	O81635	Kinesin-4	AT1G63640.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os01g54080.1	"kinesin motor protein-related, putative, expressed"	Medtr4g158250.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.210436.1.S1_at	A	A1TS	POPTR_0012s05330	POPTR_0012s05330 (11)	scaffold_12:4941508-4942499(-) (11)	NA	O81635	Kinesin-4	AT1G63640.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os01g54080.1	"kinesin motor protein-related, putative, expressed"	Medtr4g158250.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.210436.1.S1_s_at	A	A1TS	POPTR_0012s05330	POPTR_0012s05330 (11)	scaffold_12:4941578-4942301(-) (11)//scaffold_15:3430587-3431304(+) (10)	POPTR_0015s03640 (8)	O81635	Kinesin-4	AT1G63640.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os01g54080.1	"kinesin motor protein-related, putative, expressed"	Medtr4g158250.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.210437.1.S1_at	A	A1TS	POPTR_0012s05370	POPTR_0012s05370 (11)	scaffold_12:5001936-5003073(-) (11)	NA	Q0WKY2	Carbon catabolite repressor protein 4 homolog 5	AT1G73875.1	DNAse I-like superfamily protein 	LOC_Os01g42490.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr4g158510.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210438.1.S1_at	A	A1TS	POPTR_0012s05420	POPTR_0012s05420 (10)	scaffold_12:5061291-5061778(+) (10)	NA	Q6ZRS2	Helicase SRCAP	AT3G12810.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os03g22900.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210439.1.S1_at	A	A1TS	POPTR_0012s05450	POPTR_0012s05450 (11)	scaffold_12:5091243-5091618(-) (11)	NA	Q9SX33	Putative phospholipid-transporting ATPase 9	AT1G68710.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os05g01030.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr8g115700.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.210439.1.S1_s_at	A	A1TS	POPTR_0012s05450	POPTR_0012s05450 (11)	scaffold_12:5091258-5091686(-) (11)	NA	Q9SX33	Putative phospholipid-transporting ATPase 9	AT1G68710.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os05g01030.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr8g115700.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.210440.1.S1_at	A	A1TS	POPTR_0012s05460	POPTR_0012s05460 (11)	scaffold_12:5108491-5108994(-) (11)	NA	Q24K12	G patch domain-containing protein 1	AT5G23080.1	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 	LOC_Os06g29400.1	"surp module family protein, putative, expressed"	Medtr8g115710.1	SWAP/Surp 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.210441.1.S1_at	A	A1TS	POPTR_0012s05490	POPTR_0012s05490 (11)	scaffold_12:5157021-5157519(-) (11)	NA	Q7ZXX2	Kinesin-like protein KIF19	AT1G18550.1	ATP binding microtubule motor family protein 	LOC_Os01g42070.1	"kinesin motor domain containing protein, putative, expressed"	Medtr8g115780.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.210442.1.S1_at	A	A1TS	POPTR_0012s05500	POPTR_0012s05500 (11)	scaffold_12:5164522-5170402(+) (11)	NA	NA	NA	AT1G48950.1	C3HC zinc finger-like  	LOC_Os01g42080.1	"zinc ion binding protein, putative, expressed"	Medtr8g116510.1	"Zinc finger, C3HC-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210443.1.S1_at	A	A1TS	POPTR_0012s05570	POPTR_0012s05570 (11)	scaffold_12:5219018-5220896(+) (11)	NA	NA	NA	AT1G48960.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	NA	NA	Medtr5g049170.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.210444.1.S1_at	A	A1TS	POPTR_0012s05580	POPTR_0012s05580 (11)	scaffold_12:5241757-5242222(+) (11)	NA	P08770	Putative AC transposase	AT1G18560.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os01g02100.2	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.210445.1.S1_at	A	A1TS	POPTR_0012s05590	POPTR_0012s05590 (11)	scaffold_12:5242941-5244788(-) (11)	NA	P41111	Translation initiation factor eIF-2B subunit delta	AT5G38640.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g44310.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.210446.1.S1_at	A	A1TS	POPTR_0012s05590	POPTR_0012s05590 (11)	scaffold_12:5245829-5246409(-) (11)	NA	P41111	Translation initiation factor eIF-2B subunit delta	AT5G38640.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g44310.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.210447.1.S1_at	A	A1TS	POPTR_0012s05620	POPTR_0012s05620 (11)	scaffold_12:5338174-5338327(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210448.1.S1_at	A	A1TS	POPTR_0012s05630	POPTR_0012s05630 (10)	scaffold_12:5372146-5372281(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210449.1.S1_at	A	A1TS	POPTR_0012s05650	POPTR_0012s05650 (11)	scaffold_12:5384142-5384824(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210450.1.S1_at	A	A1TS	POPTR_0012s05660	POPTR_0012s05660 (11)	scaffold_12:5400555-5400922(-) (11)	NA	A1YKT1	Transcription factor TCP18	AT3G18550.2	TCP family transcription factor  	LOC_Os03g49880.1	"TCP family transcription factor, putative, expressed"	AC233675_3.1	TCP transcription factor AC233675.1 11574-12645 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210451.1.S1_at	A	A1TS	POPTR_0012s05670	POPTR_0012s05670 (11)	scaffold_12:5423955-5426204(+) (11)	NA	O24617	DNA mismatch repair protein Msh2	AT3G18524.1	MUTS homolog 2 	LOC_Os05g19270.1	"MSH-like DNA mismatch repair protein, putative, expressed"	Medtr6g101960.1	"DNA mismatch repair protein, eukaryotic MSH2 "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.210452.1.S1_at	A	A1TS	POPTR_0012s05720	POPTR_0012s05720 (11)	scaffold_12:5513815-5514503(+) (11)	NA	Q869R9	Myb-like protein J	AT1G49010.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr8g073480.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210453.1.S1_at	A	A1TS	POPTR_0012s05740	POPTR_0012s05740 (11)	scaffold_12:5545774-5546697(+) (11)	NA	NA	NA	AT1G25540.2	phytochrome and flowering time regulatory protein (PFT1) 	LOC_Os09g13610.1	"PFT1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210454.1.S1_at	A	A1MS	POPTR_0012s05760	POPTR_0012s05760 (10)	scaffold_12:5567643-5568361(-) (10)	NA	Q9C7N5	GDSL esterase/lipase At1g29660	AT1G29660.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.210456.1.S1_at	A	A1TS	POPTR_0012s05810	POPTR_0012s05810 (11)	scaffold_12:5626361-5627450(+) (11)	NA	Q9LS42	Protein CASP	AT3G18480.1	CCAAT-displacement protein alternatively spliced product 	LOC_Os03g50300.1	"CASP, putative, expressed"	Medtr4g158400.1	"CASP, C-terminal "	GO:0006891|intra-Golgi vesicle-mediated transport	NA	GO:0030173|integral to Golgi membrane
PtpAffx.210456.1.S1_s_at	A	A1TS	POPTR_0012s05810	POPTR_0012s05810 (11)	scaffold_12:5625862-5627488(+) (11)	NA	Q9LS42	Protein CASP	AT3G18480.1	CCAAT-displacement protein alternatively spliced product 	LOC_Os03g50300.1	"CASP, putative, expressed"	Medtr4g158400.1	"CASP, C-terminal "	GO:0006891|intra-Golgi vesicle-mediated transport	NA	GO:0030173|integral to Golgi membrane
PtpAffx.210457.1.S1_at	A	A1TS	POPTR_0012s05840	POPTR_0012s05840 (11)	scaffold_12:5661795-5661839(+) (11)	NA	Q84M92	Actin-related protein 4	AT1G18450.1	actin-related protein 4 	LOC_Os08g04280.2	"actin, putative, expressed"	Medtr5g075350.3	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.210458.1.S1_at	A	A1TS	POPTR_0012s05850	POPTR_0012s05850 (11)	scaffold_12:5699820-5700947(+) (11)	NA	NA	NA	AT5G07980.1	dentin sialophosphoprotein-related 	LOC_Os03g11460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210459.1.S1_at	A	A1TS	POPTR_0012s05860	POPTR_0012s05860 (11)	scaffold_12:5716508-5717862(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210461.1.S1_at	A	A1TS	POPTR_0012s05890	POPTR_0012s05890 (11)	scaffold_12:5744302-5744574(+) (11)	NA	Q9S7T8	Serpin-ZX	AT1G47710.1	Serine protease inhibitor (SERPIN) family protein 	NA	NA	Medtr3g148420.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210463.1.S1_s_at	A	A1TS	POPTR_0012s05900	POPTR_0012s05900 (11)	scaffold_12:5789926-5790285(+) (11)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	Medtr1g083510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210464.1.S1_at	A	A1TS	POPTR_0012s05930	POPTR_0012s05930 (11)	scaffold_12:5829065-5830021(-) (11)	NA	Q7M3S9	RING finger protein B	AT1G18610.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210465.1.S1_at	A	A1TS	POPTR_0012s05940	POPTR_0012s05940 (11)	scaffold_12:5857541-5858345(-) (11)	NA	Q9LFW3	COBRA-like protein 4	AT5G15630.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os03g30250.1	"COBRA-like protein precursor, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210467.1.S1_at	A	A1TS	POPTR_0012s05980	POPTR_0012s05980 (11)	scaffold_12:6033137-6033665(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210470.1.S1_s_at	A	A1TS	POPTR_0012s12650	POPTR_0012s12650 (11)	scaffold_12:12973458-12974004(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210471.1.S1_s_at	A	A2TS	POPTR_0012s12440	POPTR_0012s12440 (11)//POPTR_0015s03530 (11)	scaffold_12:12809027-12809769(+) (11)//scaffold_15:3171033-3171765(-) (11)	NA	Q9SHY8	Pre-mRNA-splicing factor SLU7-A	AT1G65660.1	Pre-mRNA splicing Prp18-interacting factor 	LOC_Os08g03390.1	"pre-mRNA-splicing factor SLU7, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210472.1.S1_at	A	A1TS	POPTR_0012s12420	POPTR_0012s12420 (11)	scaffold_12:12754006-12754055(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210473.1.S1_s_at	A	A1MS	POPTR_0012s12400	POPTR_0012s12400 (10)	scaffold_12:12703706-12707971(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210478.1.S1_at	A	A1TS	POPTR_0012s12410	POPTR_0012s12410 (11)	scaffold_12:12746492-12747764(+) (11)	POPTR_0012s12370 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210479.1.S1_s_at	A	A1TS	POPTR_2181s00200	POPTR_2181s00200 (11)	scaffold_2181:2313-2475(+) (11)//scaffold_775:5137-5299(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210480.1.S1_at	A	A1TS	POPTR_0775s00200	POPTR_0775s00200 (10)	scaffold_775:3647-4489(+) (10)//scaffold_8:16297207-16298040(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210482.1.S1_at	A	A1TS	POPTR_0012s06660	POPTR_0012s06660 (11)	scaffold_12:6999802-7000330(-) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT1G73880.1	UDP-glucosyl transferase 89B1 	LOC_Os04g55680.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr2g074330.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210483.1.S1_at	A	A1TS	POPTR_0012s06670	POPTR_0012s06670 (11)	scaffold_12:7065528-7066081(+) (11)	NA	O13046	WD repeat and HMG-box DNA-binding protein 1	AT3G42660.1	transducin family protein / WD-40 repeat family protein 	LOC_Os09g06560.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g074310.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210484.1.S1_at	A	A1TS	POPTR_0012s06670	POPTR_0012s06670 (11)	scaffold_12:7067127-7067799(+) (11)	NA	O13046	WD repeat and HMG-box DNA-binding protein 1	AT3G42660.1	transducin family protein / WD-40 repeat family protein 	LOC_Os09g06560.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g074310.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210485.1.S1_at	A	A1TS	POPTR_0012s06680	POPTR_0012s06680 (11)	scaffold_12:7096894-7097235(+) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT5G08139.1	RING/U-box superfamily protein 	LOC_Os12g02620.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC146721_14.1	"Zinc finger, RING-type AC146721.7 82004-80669 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210486.1.S1_at	A	A1TS	POPTR_0012s06710	POPTR_0012s06710 (11)	scaffold_12:7151447-7151988(-) (11)	NA	Q6NYV9	RNA polymerase-associated protein LEO1	AT5G61150.2	leo1-like family protein 	LOC_Os12g38970.1	"VIP4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210487.1.S1_at	A	A1TA	POPTR_0012s06735	POPTR_0012s06735 (9)	scaffold_12:7181271-7181568(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210488.1.S1_at	A	A1TS	POPTR_0012s06740	POPTR_0012s06740 (11)	scaffold_12:7193859-7196933(-) (11)	NA	Q03829	Uncharacterized mitochondrial carrier YMR166C	AT1G74240.1	Mitochondrial substrate carrier family protein 	LOC_Os03g11510.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g036750.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210489.1.S1_s_at	A	A2TS	POPTR_0003s13470	POPTR_0012s06810 (11)//POPTR_0003s13470 (11)	scaffold_12:7272144-7272244(+) (11)//scaffold_18:4519204-4519247(-) (9)//scaffold_3:13844109-13844209(-) (11)	NA	Q9FFR9	Cation/H(+) antiporter 18	AT5G41610.1	cation/H+ exchanger 18 	LOC_Os05g19500.1	"ATCHX, putative, expressed"	Medtr5g009880.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.210490.1.S1_at	A	A1TS	POPTR_0012s06850	POPTR_0012s06850 (10)	scaffold_12:7339152-7340007(+) (11)	NA	Q9BY12	S phase cyclin A-associated protein in the endoplasmic reticulum	NA	NA	LOC_Os06g12876.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210491.1.S1_at	A	A1TS	POPTR_0012s06860	POPTR_0012s06860 (11)	scaffold_12:7350725-7353454(-) (11)	NA	Q6NZP1	Zinc finger Ran-binding domain-containing protein 3	AT5G07810.1	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein 	LOC_Os07g40730.1	"SNF2 domain-containing protein, putative, expressed"	Medtr8g133800.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0004519|endonuclease activity	NA
PtpAffx.210492.1.S1_at	A	A1TS	POPTR_0012s06870	POPTR_0012s06870 (11)	scaffold_12:7363384-7365065(-) (11)	NA	Q5FWF4	Zinc finger Ran-binding domain-containing protein 3	AT5G07810.1	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein 	LOC_Os07g40730.1	"SNF2 domain-containing protein, putative, expressed"	Medtr8g133800.1	"SNF2-related; Helicase, C-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210493.1.S1_s_at	A	A1MS	POPTR_0012s06880	POPTR_0012s06880 (11)	scaffold_12:7392176-7392741(-) (11)	NA	NA	NA	AT5G07820.1	Plant calmodulin-binding protein-related 	LOC_Os03g11290.1	expressed protein	Medtr6g013960.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210495.1.S1_at	A	A1TS	POPTR_0012s06940	POPTR_0012s06940 (11)	scaffold_12:7535462-7536015(-) (11)	NA	C0LGJ1	Probable LRR receptor-like serine/threonine-protein kinase At1g74360	AT1G74360.1	Leucine-rich repeat protein kinase family protein 	LOC_Os07g40630.1	"BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210496.1.S1_at	A	A1TS	POPTR_0012s06950	POPTR_0012s06950 (11)	scaffold_12:7551109-7553452(+) (11)	NA	NA	NA	AT1G18680.1	HNH endonuclease domain-containing protein 	LOC_Os10g18890.1	"HNH endonuclease domain-containing protein, putative, expressed"	NA	NA	NA	GO:0004519|endonuclease activity||GO:0003676|nucleic acid binding	NA
PtpAffx.210497.1.S1_at	A	A1TS	POPTR_0012s06980	POPTR_0012s06980 (11)	scaffold_12:7594162-7594552(+) (11)	NA	Q9FLQ7	Formin-like protein 20	AT5G07740.1	actin binding 	LOC_Os07g40510.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g016730.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210499.1.S1_at	A	A1TS	POPTR_0012s06990	POPTR_0012s06990 (11)	scaffold_12:7613127-7613594(-) (11)	NA	NA	NA	AT5G61340.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g38810.1	expressed protein	Medtr4g115820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210500.1.S1_at	A	A1TS	POPTR_0012s07000	POPTR_0012s07000 (11)	scaffold_12:7648397-7652998(+) (11)	NA	Q17RB8	LON peptidase N-terminal domain and RING finger protein 1	AT1G18660.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os12g16690.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
PtpAffx.210501.1.S1_at	A	A1TS	POPTR_0012s07010	POPTR_0012s07010 (10)	scaffold_12:7660211-7660928(+) (11)	NA	Q9FLJ8	Probable receptor-like protein kinase At5g61350	AT5G61350.1	Protein kinase superfamily protein 	LOC_Os06g03610.1	"TKL_IRAK_CrRLK1L-1.13 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr1g126510.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210502.1.S1_at	A	A1TS	POPTR_0012s07010	POPTR_0012s07010 (11)	scaffold_12:7662884-7663467(+) (11)	NA	Q9FLJ8	Probable receptor-like protein kinase At5g61350	AT5G61350.1	Protein kinase superfamily protein 	LOC_Os06g03610.1	"TKL_IRAK_CrRLK1L-1.13 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr1g126510.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210504.1.S1_at	A	A1MS	POPTR_0012s07030	POPTR_0012s07030 (11)	scaffold_12:7677174-7677642(-) (11)	NA	Q9FLJ6	"Pentatricopeptide repeat-containing protein At5g61370, mitochondrial"	AT5G61370.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	Medtr7g018500.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210505.1.S1_at	A	A1TS	POPTR_1337s00010	POPTR_1337s00010 (11)	scaffold_1337:3557-3858(+) (11)	NA	Q43138	Probable mannitol dehydrogenase 3	AT4G37980.1	elicitor-activated gene 3-1 	NA	NA	Medtr5g032750.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210506.1.S1_at	A	A1TS	POPTR_0012s07060	POPTR_0012s07060 (11)	scaffold_12:7742107-7742324(+) (11)	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g51080.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210506.1.S1_x_at	A	A1TS	POPTR_0012s07060	POPTR_0012s07060 (11)	scaffold_12:7741995-7742329(+) (11)	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g51080.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210508.1.S1_s_at	A	A1TS	POPTR_0012s07080	POPTR_0012s07080 (11)	scaffold_12:7770176-7770722(+) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.210510.1.S1_at	A	A1TS	POPTR_0012s07110	POPTR_0012s07110 (11)	scaffold_12:7805844-7806337(+) (11)	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os02g51290.1	"HVA22, putative, expressed"	Medtr8g112530.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210513.1.S1_at	A	A1TS	POPTR_0012s07140	POPTR_0012s07140 (11)	scaffold_12:7909923-7910127(+) (11)	NA	O22800	Zinc finger protein CONSTANS-LIKE 14	AT2G33500.2	B-box type zinc finger protein with CCT domain 	LOC_Os02g49230.6	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g096570.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.210514.1.S1_at	A	A1TS	POPTR_0012s07160	POPTR_0012s07160 (11)	scaffold_12:7935158-7935968(+) (11)	NA	Q84K47	ABC transporter A family member 2	AT3G47730.1	ATP-binding cassette A2 	LOC_Os08g30740.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g149810.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.210515.1.S1_at	A	A1TS	POPTR_0012s07170	POPTR_0012s07170 (11)	scaffold_12:7944146-7944471(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT1G74690.1	IQ-domain 31 	LOC_Os05g45930.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g112590.2	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210516.1.S1_at	A	A1TS	POPTR_0012s07180	POPTR_0012s07180 (11)	scaffold_12:7961090-7962923(+) (11)	NA	Q9ZPC0	"Isochorismate synthase, chloroplastic"	AT1G18870.1	isochorismate synthase 2 	LOC_Os09g19734.1	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr4g104110.1	Anthranilate synthase component I and chorismate binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210517.1.S1_at	A	A1TS	POPTR_0012s07190	POPTR_0012s07190 (11)	scaffold_12:7968968-7970368(+) (11)	NA	NA	NA	AT2G27140.1	HSP20-like chaperones superfamily protein 	LOC_Os05g51440.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr8g112860.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210518.1.S1_at	A	A1TS	POPTR_0012s07210	POPTR_0012s07210 (11)	scaffold_12:7999156-8000004(-) (11)	NA	P42056	Mitochondrial outer membrane protein porin of 36 kDa	AT3G01280.1	voltage dependent anion channel 1 	LOC_Os01g40570.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr8g112890.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.210519.1.S1_at	A	A1TS	POPTR_0012s07250	POPTR_0012s07250 (11)	scaffold_12:8039959-8040496(-) (11)	NA	Q8H157	Nitrate transporter 1.2	AT1G69850.1	nitrate transporter 1:2 	LOC_Os06g38294.1	"peptide transporter PTR2, putative, expressed"	Medtr5g039420.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.210520.1.S1_at	A	A1TS	POPTR_0012s07280	POPTR_0012s07280 (11)	scaffold_12:8131935-8132980(-) (11)	NA	NA	NA	AT5G62720.1	Integral membrane HPP family protein 	LOC_Os03g48030.1	"integral membrane HPP family protein, putative, expressed"	Medtr8g113070.1	HPP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210522.1.S1_at	A	A2TS	POPTR_0012s07300	POPTR_0012s07300 (11)//POPTR_0012s07310 (9)	scaffold_12:8168601-8169551(-) (11)//scaffold_12:8194828-8195747(-) (9)	NA	Q9AXH9	Ent-kaurenoic acid oxidase 1	AT1G05160.1	"cytochrome P450, family 88, subfamily A, polypeptide 3 "	LOC_Os10g23180.1	"cytochrome P450, putative, expressed"	Medtr5g014420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.210523.1.S1_at	A	A1TS	POPTR_0012s07320	POPTR_0012s07320 (11)	scaffold_12:8210646-8211129(+) (11)	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.210526.1.S1_s_at	A	A2TS	POPTR_0012s07360	POPTR_0015s07740 (11)//POPTR_0012s07360 (11)	scaffold_12:8263186-8264603(-) (11)//scaffold_15:9024981-9026375(-) (11)	NA	Q9SSF8	Calcium-dependent protein kinase 30	AT1G74740.1	calcium-dependent protein kinase 30 	LOC_Os01g61590.1	"CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210527.1.S1_at	A	A1TS	POPTR_0012s07370	POPTR_0012s07370 (11)	scaffold_12:8309595-8310448(+) (11)	NA	NA	NA	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210530.1.S1_at	A	A1TS	POPTR_0012s07400	POPTR_0012s07400 (11)	scaffold_12:8331438-8332197(+) (11)	NA	NA	NA	AT1G74780.1	Nodulin-like / Major Facilitator Superfamily protein 	LOC_Os12g44180.1	"nodulin, putative, expressed"	Medtr5g097690.1	Major facilitator superfamily; Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210531.1.S1_at	A	A1TS	POPTR_0012s07420	POPTR_0012s07420 (11)	scaffold_12:8343096-8343582(+) (11)	POPTR_0015s07860 (6)	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os07g09580.1	"aminoacyl-tRNA synthetase, putative, expressed"	AC233677_23.1	"aminoacyl-tRNA synthetase, putative AC233677.2 135287-140524 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210532.1.S1_at	A	A1TS	POPTR_0012s07420	POPTR_0012s07420 (10)	scaffold_12:8347604-8349041(+) (11)	POPTR_0015s07860 (7)	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os07g09580.1	"aminoacyl-tRNA synthetase, putative, expressed"	AC233677_23.1	"aminoacyl-tRNA synthetase, putative AC233677.2 135287-140524 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210532.1.S1_x_at	A	A1TS	POPTR_0012s07420	POPTR_0012s07420 (10)	scaffold_12:8346141-8349041(+) (11)	POPTR_0015s07860 (6)	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os07g09580.1	"aminoacyl-tRNA synthetase, putative, expressed"	AC233677_23.1	"aminoacyl-tRNA synthetase, putative AC233677.2 135287-140524 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210533.1.S1_at	A	A1TS	POPTR_0012s07430	POPTR_0012s07430 (10)	scaffold_12:8351832-8352358(-) (10)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	AC233677_25.1	AAA-protein subdomain AC233677.2 145026-143479 E EGN_Mt090430 200	NA	GO:0005524|ATP binding	NA
PtpAffx.210534.1.S1_s_at	A	A1TS	POPTR_0012s07430	POPTR_0012s07430 (11)	scaffold_12:8352949-8353100(-) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	AC233677_25.1	AAA-protein subdomain AC233677.2 145026-143479 E EGN_Mt090430 200	NA	GO:0005524|ATP binding	NA
PtpAffx.210535.1.S1_at	A	A1TS	POPTR_0012s07440	POPTR_0012s07440 (11)	scaffold_12:8366418-8366709(-) (11)	NA	Q9LV16	"Probable beta-1,3-galactosyltransferase 19"	AT5G62620.1	Galactosyltransferase family protein 	LOC_Os03g58920.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g038320.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.210535.1.S1_s_at	A	A1TS	POPTR_0012s07440	POPTR_0012s07440 (11)	scaffold_12:8366229-8366359(-) (11)	NA	Q9LV16	"Probable beta-1,3-galactosyltransferase 19"	AT5G62620.1	Galactosyltransferase family protein 	LOC_Os03g58920.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g038320.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.210535.1.S1_x_at	A	A1TS	POPTR_0012s07440	POPTR_0012s07440 (11)	scaffold_12:8366322-8366709(-) (11)	NA	Q9LV16	"Probable beta-1,3-galactosyltransferase 19"	AT5G62620.1	Galactosyltransferase family protein 	LOC_Os03g58920.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g038320.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.210536.1.S1_at	A	A1TS	POPTR_0012s07450	POPTR_0012s07450 (10)	scaffold_12:8374944-8375506(+) (11)	NA	Q8LPH6	Transcription factor MYB86	AT3G28470.1	Duplicated homeodomain-like superfamily protein 	LOC_Os03g18480.1	"MYB family transcription factor, putative, expressed"	Medtr6g010080.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210537.1.S1_at	A	A1TS	POPTR_0214s00230	POPTR_0214s00230 (10)	scaffold_12:8407941-8408315(+) (11)//scaffold_214:39614-39989(+) (10)	POPTR_0018s12540 (6)	NA	NA	NA	NA	LOC_Os11g44830.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g008710.1	"Protein of unknown function DUF889, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210538.1.S1_at	A	A1TS	POPTR_0012s07520	POPTR_0012s07520 (11)	scaffold_12:8428801-8429404(-) (11)	NA	NA	NA	AT1G74830.1	"Protein of unknown function, DUF593 "	LOC_Os10g27480.1	expressed protein	AC233677_15.1	Protein of unknown function DUF593 AC233677.2 93257-91501 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210539.1.S1_at	A	A1TS	POPTR_0012s07540	POPTR_0012s07540 (11)	scaffold_12:8449345-8452439(+) (11)	NA	Q6P2B1	Transportin-3	AT5G62600.1	ARM repeat superfamily protein 	LOC_Os10g33770.1	importin-beta N-terminal domain containing protein	AC233677_6.1	Exportin-1/Importin-beta-like AC233677.2 40883-35967 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.210540.1.S1_at	A	A1TS	POPTR_0012s07550	POPTR_0012s07550 (11)	scaffold_12:8468791-8469673(+) (11)	NA	Q39030	Serine/threonine-protein kinase AtPK2/AtPK19	AT3G08720.2	serine/threonine protein kinase 2 	LOC_Os03g21620.1	"AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210541.1.S1_at	A	A1TS	POPTR_0012s07630	POPTR_0012s07630 (11)	scaffold_12:8546520-8547318(-) (11)	NA	NA	NA	AT3G48080.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr3g111260.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210542.1.S1_at	A	A1TS	POPTR_0012s07670	POPTR_0012s07670 (11)	scaffold_12:8584465-8584737(-) (11)	NA	Q9STS3	Anaphase-promoting complex subunit 8	AT3G48150.1	anaphase-promoting complex subunit 8 	LOC_Os02g43920.1	"cell division cycle protein 23, putative, expressed"	Medtr8g025270.1	Cdc23 	GO:0030071|regulation of mitotic metaphase/anaphase transition	NA	GO:0005680|anaphase-promoting complex
PtpAffx.210543.1.S1_at	A	A1TS	POPTR_0012s07740	POPTR_0012s07740 (11)	scaffold_12:8649558-8649860(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210544.1.S1_at	A	A1TS	POPTR_0012s07760	POPTR_0012s07760 (11)	scaffold_12:8666222-8667230(-) (11)	NA	P54802	Alpha-N-acetylglucosaminidase	AT5G13690.1	alpha-N-acetylglucosaminidase family / NAGLU family 	LOC_Os04g55730.1	"alpha-N-acetylglucosaminidase, putative, expressed"	Medtr3g039850.1	Alpha-N-acetylglucosaminidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210545.1.S1_at	A	A1TS	POPTR_0012s07790	POPTR_0012s07790 (11)	scaffold_12:8737379-8737747(+) (11)	NA	Q9FJP6	U-box domain-containing protein 38	AT5G65200.1	plant U-box 38 	LOC_Os09g21740.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr6g008870.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.210546.1.S1_at	A	A1TS	POPTR_0012s07800	POPTR_0012s07800 (11)	scaffold_12:8755467-8755982(-) (11)	NA	Q9FJR1	Peroxidase 65	AT5G47000.1	Peroxidase superfamily protein 	LOC_Os02g50770.1	"peroxidase precursor, putative, expressed"	Medtr6g008740.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.210547.1.S1_at	A	A1TS	POPTR_0012s07850	POPTR_0012s07850 (11)	scaffold_12:8802392-8804829(+) (11)	NA	NA	NA	AT5G62570.2	Calmodulin binding protein-like 	LOC_Os03g32160.1	"calmodulin binding protein, putative, expressed"	Medtr8g125240.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210548.1.S1_at	A	A1TS	POPTR_0012s07850	POPTR_0012s07850 (11)	scaffold_12:8803241-8804020(+) (11)	NA	NA	NA	AT5G62570.2	Calmodulin binding protein-like 	LOC_Os03g32160.1	"calmodulin binding protein, putative, expressed"	Medtr8g125240.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210548.1.S1_x_at	A	A1TS	POPTR_0012s07850	POPTR_0012s07850 (11)	scaffold_12:8803203-8804020(+) (11)	NA	NA	NA	AT5G62570.2	Calmodulin binding protein-like 	LOC_Os03g32160.1	"calmodulin binding protein, putative, expressed"	Medtr8g125240.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210550.1.S1_at	A	A1TS	POPTR_0012s07900	POPTR_0012s07900 (9)	scaffold_12:8879638-8879813(+) (11)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50850.1	"BAH domain containing protein, putative, expressed"	Medtr4g149410.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.210552.1.S1_at	A	A1TS	POPTR_0012s07910	POPTR_0012s07910 (11)	scaffold_12:8902727-8902883(+) (11)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50840.2	"BAH domain containing protein, putative, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.210552.1.S1_x_at	A	A1TS	POPTR_0012s07910	POPTR_0012s07910 (11)	scaffold_12:8902727-8902911(+) (11)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50840.2	"BAH domain containing protein, putative, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.210554.1.S1_at	A	A1TS	POPTR_0012s07950	POPTR_0012s07950 (11)	scaffold_12:8945669-8946682(+) (11)	NA	O48788	Probable inactive receptor kinase At2g26730	AT2G26730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g20970.1	"receptor kinase, putative"	Medtr1g140560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210555.1.S1_at	A	A1TS	POPTR_0012s07990	POPTR_0012s07990 (11)	scaffold_12:8970514-8971142(-) (11)	NA	Q9LRA7	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9"	AT1G23870.1	trehalose-phosphatase/synthase 9 	LOC_Os08g31980.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g110050.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.210556.1.S1_at	A	A1TS	POPTR_0012s08000	POPTR_0012s08000 (11)	scaffold_12:9006011-9006377(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g39170.2	expressed protein	Medtr8g125500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210556.1.S1_s_at	A	A1TS	POPTR_0012s08000	POPTR_0012s08000 (11)	scaffold_12:9004387-9006232(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g39170.2	expressed protein	Medtr8g125500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210557.1.S1_at	A	A1TS	POPTR_0012s08020	POPTR_0012s08020 (11)	scaffold_12:9022403-9023162(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210558.1.S1_at	A	A1TS	POPTR_0012s08040	POPTR_0012s08040 (11)	scaffold_12:9048485-9048921(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G50000.1	Protein kinase superfamily protein 	LOC_Os05g50190.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210559.1.S1_at	A	A1TS	POPTR_0012s08060	POPTR_0012s08060 (11)	scaffold_12:9085119-9085694(+) (11)	NA	P92990	Probable polygalacturonase non-catalytic subunit JP650	AT1G70370.2	polygalacturonase 2 	LOC_Os08g29200.1	"BURP domain containing protein, expressed"	Medtr3g113530.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210560.1.S1_at	A	A1TS	POPTR_0012s08090	POPTR_0012s08090 (11)	scaffold_12:9134854-9135806(+) (11)	NA	O64411	Polyamine oxidase	AT5G13700.1	polyamine oxidase 1 	LOC_Os09g20284.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g039870.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.210561.1.S1_at	A	A1TS	POPTR_0012s08100	POPTR_0012s08100 (11)	scaffold_12:9149031-9149498(+) (11)	NA	Q8GYT9	E3 ubiquitin-protein ligase SIS3	AT3G47990.1	SUGAR-INSENSITIVE 3 	LOC_Os05g05280.1	"zinc finger family protein, putative, expressed"	Medtr8g125420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210563.1.S1_at	A	A1TS	POPTR_0012s08170	POPTR_0012s08170 (11)	scaffold_12:9213924-9214494(-) (11)	NA	Q3E6Q1	Pentatricopeptide repeat-containing protein At1g11290	AT1G11290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g56850.1	"pentatricopeptide, putative, expressed"	Medtr4g134960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210564.1.S1_at	A	A1TS	POPTR_0012s08190	POPTR_0012s08190 (11)	scaffold_12:9232867-9234228(+) (11)	NA	Q9SEI0	Transcription factor WER	AT5G14750.1	myb domain protein 66 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210565.1.S1_at	A	A1TS	POPTR_0012s08210	POPTR_0012s08210 (10)	scaffold_12:9249711-9250348(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210568.1.S1_at	A	A1TS	POPTR_0012s08250	POPTR_0012s08250 (10)	scaffold_12:9301557-9302202(-) (10)	NA	NA	NA	AT5G62520.1	similar to RCD one 5 	LOC_Os04g57640.2	"RCD1, putative, expressed"	Medtr3g113780.1	"PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210569.1.S1_at	A	A1TS	POPTR_0012s08260	POPTR_0012s08260 (11)	scaffold_12:9310750-9310882(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210570.1.S1_at	A	A1TS	POPTR_0012s08270	POPTR_0012s08270 (11)	scaffold_12:9348375-9348990(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210572.1.S1_at	A	A1TS	POPTR_0012s08300	POPTR_0012s08300 (11)	scaffold_12:9369057-9369722(-) (11)	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT3G48190.1	ataxia-telangiectasia mutated 	LOC_Os05g38810.1	"PWWP domain containing protein, expressed"	Medtr6g005730.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210573.1.S1_at	A	A1TS	POPTR_0012s08340	POPTR_0012s08340 (11)	scaffold_12:9424818-9426058(+) (11)	NA	Q8VYR7	Boron transporter 1	AT2G47160.1	HCO3- transporter family 	LOC_Os12g37840.2	"boron transporter protein, putative, expressed"	Medtr3g114070.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210573.1.S1_x_at	A	A1TS	POPTR_0012s08340	POPTR_0012s08340 (11)	scaffold_12:9424805-9426058(+) (11)	NA	Q8VYR7	Boron transporter 1	AT2G47160.1	HCO3- transporter family 	LOC_Os12g37840.2	"boron transporter protein, putative, expressed"	Medtr3g114070.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210574.1.S1_at	A	A1TS	POPTR_0012s08360	POPTR_0012s08360 (11)	scaffold_12:9456819-9457582(+) (11)	NA	Q9S7L2	Transcription factor MYB98	AT4G18770.1	myb domain protein 98 	LOC_Os06g06740.1	"MYB family transcription factor, putative, expressed"	Medtr3g114110.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210575.1.S1_at	A	A1TS	POPTR_0012s08380	POPTR_0012s08380 (11)	scaffold_12:9468581-9469522(-) (11)	NA	NA	NA	AT1G10650.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os02g03760.2	expressed protein	Medtr1g024220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210577.1.S1_at	A	A1TS	POPTR_0012s08420	POPTR_0012s08420 (11)	scaffold_12:9507024-9508473(-) (11)	NA	Q08AW4	Pleckstrin homology domain-containing family M member 3	AT3G48195.1	Phox (PX) domain-containing protein 	LOC_Os01g36870.1	"phox domain-containing protein, putative, expressed"	Medtr3g114150.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.210578.1.S1_at	A	A1TS	POPTR_0012s08430	POPTR_0012s08430 (11)	scaffold_12:9515721-9517695(+) (11)	NA	Q810V0	U3 small nucleolar ribonucleoprotein protein MPP10	AT5G66540.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os11g04200.1	"M phase phosphoprotein 10, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210579.1.S1_at	A	A1TS	POPTR_0012s08440	POPTR_0012s08440 (11)	scaffold_12:9538214-9539392(+) (11)	NA	Q02166	"Anthranilate phosphoribosyltransferase, chloroplastic"	AT5G17990.1	tryptophan biosynthesis 1 	LOC_Os03g03450.1	"anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed"	Medtr3g114190.1	"Glycosyl transferase, family 3 "	GO:0008152|metabolic process	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.21058.1.S1_at	A	A2MS	POPTR_0015s15130	POPTR_0015s15130 (10)//POPTR_0015s15270 (10)	scaffold_15:14499162-14499301(-) (10)//scaffold_15:14602435-14602574(-) (10)	POPTR_0015s15160 (7)//POPTR_0015s15240 (6)//POPTR_0015s15190 (6)	P08824	RuBisCO large subunit-binding protein subunit alpha (Fragment)	AT5G18820.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g64210.1	"T-complex protein, putative, expressed"	Medtr4g114440.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.21058.3.A1_a_at	A	A2TS	POPTR_0015s15190	POPTR_0015s15190 (11)//POPTR_0015s15270 (11)	scaffold_113:57838-58153(-) (11)//scaffold_15:14540404-14540719(-) (11)//scaffold_15:14561142-14561458(-) (11)//scaffold_15:14600189-14600504(-) (11)	POPTR_0015s15230 (7)	P21239	"RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment)"	AT5G18820.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g64210.1	"T-complex protein, putative, expressed"	Medtr4g114440.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210580.1.S1_s_at	A	A2TS	POPTR_0018s03960	POPTR_0018s03960 (11)//POPTR_0012s08460 (9)	scaffold_12:9551473-9551962(-) (11)//scaffold_18:3392981-3393470(+) (11)	NA	Q9SY75	Putative pentatricopeptide repeat-containing protein At1g10330	AT1G10330.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g18950.1	"pentatricopeptide, putative, expressed"	Medtr4g108510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210581.1.S1_at	A	A1TS	POPTR_0012s08490	POPTR_0012s08490 (11)	scaffold_12:9573134-9575495(-) (11)	NA	O31743	Ribosome biogenesis GTPase A	AT4G10650.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os10g42170.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr7g108550.1	"GTP-binding protein, HSR1-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210582.1.S1_at	A	A1TS	POPTR_0012s08510	POPTR_0012s08510 (11)	scaffold_12:9585916-9586400(+) (11)	NA	NA	NA	AT5G14540.1	Protein of unknown function (DUF1421) 	LOC_Os05g07730.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210583.1.S1_at	A	A1TS	POPTR_0012s08520	POPTR_0012s08520 (11)	scaffold_12:9601239-9601943(+) (11)	NA	Q9S7N2	Tryptophan aminotransferase 1	AT4G24670.2	tryptophan aminotransferase related 2 	LOC_Os05g07720.1	"alliin lyase precursor, putative, expressed"	Medtr3g114550.1	"Allinase, C-terminal; ; "	NA	GO:0016846|carbon-sulfur lyase activity	NA
PtpAffx.210584.1.S1_at	A	A1TS	POPTR_0012s08530	POPTR_0012s08530 (9)	scaffold_12:9610256-9610362(-) (11)	NA	Q9SS98	Oleosin 5	AT3G01570.1	Oleosin family protein 	LOC_Os03g49190.1	"oleosin, putative, expressed"	Medtr3g133000.1	Oleosin 	NA	NA	GO:0043231|intracellular membrane-bounded organelle||GO:0016021|integral to membrane||GO:0012511|monolayer-surrounded lipid storage body
PtpAffx.210584.1.S1_s_at	A	A1TS	POPTR_0012s08530	POPTR_0012s08530 (11)	scaffold_12:9609996-9610266(-) (11)	NA	Q9SS98	Oleosin 5	AT3G01570.1	Oleosin family protein 	LOC_Os03g49190.1	"oleosin, putative, expressed"	Medtr3g133000.1	Oleosin 	NA	NA	GO:0043231|intracellular membrane-bounded organelle||GO:0016021|integral to membrane||GO:0012511|monolayer-surrounded lipid storage body
PtpAffx.210585.1.S1_at	A	A1TS	POPTR_0012s08540	POPTR_0012s08540 (11)	scaffold_12:9634895-9635221(-) (11)	NA	Q9FML4	Protein LATERAL ORGAN BOUNDARIES	AT5G63090.4	Lateral organ boundaries (LOB) domain family protein 	LOC_Os01g07480.2	"DUF260 domain containing protein, putative, expressed"	Medtr3g114570.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210586.1.S1_at	A	A1TS	POPTR_0012s08560	POPTR_0012s08560 (11)	scaffold_12:9655479-9655997(+) (11)	NA	Q8W3K3	Putative disease resistance protein At1g58400	AT1G58400.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g027970.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.210587.1.S1_at	A	A1TS	POPTR_0012s08580	POPTR_0012s08580 (11)	scaffold_12:9678489-9678888(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210588.1.S1_at	A	A1MS	POPTR_0012s08610	POPTR_0012s08610 (11)	scaffold_12:9719781-9720362(-) (11)	NA	NA	NA	AT3G26600.1	armadillo repeat only 4 	LOC_Os08g43500.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g034510.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210589.1.S1_at	A	A1TS	POPTR_0012s08650	POPTR_0012s08650 (11)	scaffold_12:9757448-9759132(-) (11)	NA	Q5N7W4	DEAD-box ATP-dependent RNA helicase 30	AT5G63120.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g68320.2	"DEAD-box ATP-dependent RNA helicase 30, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.210590.1.S1_at	A	A1TS	POPTR_0012s08670	POPTR_0012s08670 (11)	scaffold_12:9782874-9783088(+) (11)	NA	Q86GL4	Superoxide-generating NADPH oxidase heavy chain subunit B	AT5G50160.1	ferric reduction oxidase 8 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.210590.1.S1_s_at	A	A1TS	POPTR_0012s08670	POPTR_0012s08670 (10)	scaffold_12:9782606-9783175(+) (10)	NA	Q86GL4	Superoxide-generating NADPH oxidase heavy chain subunit B	AT5G50160.1	ferric reduction oxidase 8 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.210591.1.S1_at	A	A1TS	POPTR_0012s08710	POPTR_0012s08710 (11)	scaffold_12:9818191-9818657(-) (11)	NA	O49484	SKP1-like protein 11	AT4G34210.1	SKP1-like 11 	LOC_Os06g02360.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr7g021210.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.210591.1.S1_x_at	A	A1TS	POPTR_0012s08710	POPTR_0012s08710 (11)	scaffold_12:9818191-9818657(-) (11)	NA	O49484	SKP1-like protein 11	AT4G34210.1	SKP1-like 11 	LOC_Os06g02360.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr7g021210.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.210592.1.S1_at	A	A1TS	POPTR_0012s08730	POPTR_0012s08730 (11)	scaffold_12:9822938-9823653(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210593.1.S1_at	A	A1TS	POPTR_0012s08740	POPTR_0012s08740 (11)	scaffold_12:9826725-9827204(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210596.1.S1_at	A	A1TS	POPTR_0012s08880	POPTR_0012s08880 (11)	scaffold_12:9940611-9941072(-) (11)	NA	O49484	SKP1-like protein 11	AT4G34210.1	SKP1-like 11 	LOC_Os06g02360.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr7g021210.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.210597.1.S1_at	A	A1TS	POPTR_0012s08890	POPTR_0012s08890 (11)	scaffold_12:9949544-9950571(-) (11)	NA	Q9LMB9	Cysteine-rich receptor-like protein kinase 1	AT5G40380.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 42 	LOC_Os05g03920.1	"TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g035020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210599.1.S1_at	A	A1TS	POPTR_0012s08970	POPTR_0012s08970 (9)	scaffold_12:10051276-10052573(+) (10)	NA	Q9HBH5	Retinol dehydrogenase 14	AT5G50130.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g03830.1	"retinol dehydrogenase, putative, expressed"	Medtr3g114440.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210600.1.S1_at	A	A1TS	POPTR_0012s08980	POPTR_0012s08980 (11)	scaffold_12:10054188-10055532(-) (11)	NA	NA	NA	AT3G48210.1	"CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os05g02000.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210601.1.S1_s_at	A	A1TS	POPTR_0012s09040	POPTR_0012s09040 (11)	scaffold_12:10115940-10116464(+) (11)	NA	Q9SB63	Protein MODIFIER OF SNC1 1	AT4G24680.1	modifier of snc1 	LOC_Os12g37860.1	expressed protein	Medtr3g114390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210602.1.S1_at	A	A1TS	POPTR_0012s09060	POPTR_0012s09060 (11)	scaffold_12:10125728-10127167(+) (11)	NA	NA	NA	AT5G63040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g50830.1	expressed protein	Medtr3g114280.1	"T1N15.7, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210603.1.S1_at	A	A1TS	POPTR_0012s09070	POPTR_0012s09070 (11)	scaffold_12:10132979-10133486(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT4G20140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os05g07820.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative"	Medtr1g093120.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.210604.1.S1_at	A	A1TS	POPTR_0012s09080	POPTR_0012s09080 (10)	scaffold_12:10149678-10152336(-) (11)	NA	Q14149	MORC family CW-type zinc finger protein 3	AT1G19100.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os01g36840.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210605.1.S1_at	A	A1TS	POPTR_0012s09090	POPTR_0012s09090 (11)	scaffold_12:10162638-10163141(+) (11)	NA	NA	NA	AT4G12690.2	Plant protein of unknown function (DUF868) 	LOC_Os01g68140.1	expressed protein	Medtr3g115140.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210606.1.S1_at	A	A1TS	POPTR_0012s09120	POPTR_0012s09120 (11)	scaffold_12:10182515-10182865(-) (11)	NA	A7YY53	Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase	AT4G24730.3	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os07g48840.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr3g115170.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.210607.1.S1_s_at	A	A1TS	POPTR_0012s09130	POPTR_0012s09130 (11)	scaffold_12:10191276-10191666(-) (11)	NA	Q84W65	"SufE-like protein, chloroplastic"	AT5G50210.1	quinolinate synthase 	LOC_Os12g19304.2	"Fe-S metabolism associated domain containing protein, expressed"	Medtr3g102410.1	Fe-S metabolism associated SufE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210608.1.S1_at	A	A1TS	POPTR_0012s09140	POPTR_0012s09140 (11)	scaffold_12:10206776-10207368(-) (11)	NA	P24465	Cytochrome P450 71A1	AT3G48310.1	"cytochrome P450, family 71, subfamily A, polypeptide 22 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.210609.1.S1_at	A	A1TS	POPTR_0012s09170	POPTR_0012s09170 (9)	scaffold_12:10227282-10227978(-) (11)	NA	NA	NA	AT4G24750.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os02g38240.1	"rhodanese family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210610.1.S1_at	A	A1TS	POPTR_0012s09230	POPTR_0012s09230 (11)	scaffold_12:10288860-10289097(+) (11)	NA	Q9M0G7	Leucine-rich repeat receptor-like protein kinase PXL2	AT2G31880.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g18000.1	"protein kinase domain containing protein, expressed"	Medtr7g117050.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210610.1.S1_x_at	A	A1TS	POPTR_0012s09230	POPTR_0012s09230 (11)	scaffold_12:10288513-10289097(+) (11)	NA	Q9M0G7	Leucine-rich repeat receptor-like protein kinase PXL2	AT2G31880.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g18000.1	"protein kinase domain containing protein, expressed"	Medtr7g117050.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210611.1.S1_at	A	A1TS	POPTR_0012s09250	POPTR_0012s09250 (11)	scaffold_12:10294008-10294421(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210612.1.S1_at	A	A1TS	POPTR_0012s09320	POPTR_0012s09320 (9)	scaffold_12:10357354-10358382(+) (9)	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr5g032910.1	Exostosin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210613.1.S1_at	A	A1TS	POPTR_0012s09330	POPTR_0012s09330 (11)	scaffold_12:10380242-10380779(+) (11)	NA	P09122	DNA polymerase III subunit gamma/tau	AT4G24790.2	AAA-type ATPase family protein 	LOC_Os12g19180.1	"ATP binding protein, putative, expressed"	Medtr8g110070.1	"AAA ATPase; DNA polymerase III clamp loader subunit, C-terminal "	NA	GO:0005524|ATP binding	NA
PtpAffx.210614.1.S1_at	A	A1TS	POPTR_0012s09340	POPTR_0012s09340 (11)	scaffold_12:10385384-10385970(+) (11)	NA	Q9FGR7	"Pentatricopeptide repeat-containing protein At5g50280, chloroplastic"	AT5G50280.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g22870.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g048130.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210615.1.S1_at	A	A1TS	POPTR_0012s09370	POPTR_0012s09370 (11)	scaffold_12:10412799-10413909(-) (11)	NA	Q9LQU4	Uncharacterized protein At1g14870	AT1G14870.1	PLANT CADMIUM RESISTANCE 2 	LOC_Os02g52550.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g129520.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210616.1.S1_at	A	A1MS	POPTR_0012s09380	POPTR_0012s09380 (11)	scaffold_12:10419194-10419525(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210618.1.S1_at	A	A1TS	POPTR_0012s09390	POPTR_0012s09390 (11)	scaffold_12:10434335-10434837(+) (11)	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT3G48430.1	relative of early flowering 6 	LOC_Os12g18150.1	"ZOS12-04 - C2H2 zinc finger protein, expressed"	AC235753_2.1	"Transcription factor jumonji, jmjC; Zinc finger, C2H2-type; ; AC235753.1 4557-10832 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.210620.1.S1_at	A	A1TS	POPTR_0012s09420	POPTR_0012s09420 (11)	scaffold_12:10458336-10459906(-) (11)	NA	NA	NA	AT3G27160.1	Ribosomal protein S21 family protein 	LOC_Os02g09590.1	"ribosome, putative, expressed"	Medtr8g109940.1	Ribosomal protein S21 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.210621.1.S1_s_at	A	A2TS	POPTR_0012s09430	POPTR_0012s09430 (11)//POPTR_0015s10220 (11)	scaffold_12:10468656-10469620(+) (11)//scaffold_15:11209004-11210119(-) (11)	NA	Q93ZR1	Elongator complex protein 3	AT5G50320.1	radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein 	LOC_Os04g40840.1	"elongator complex protein 3, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.210622.1.S1_at	A	A1TS	POPTR_0012s09440	POPTR_0012s09440 (11)	scaffold_12:10474841-10475427(+) (11)	NA	P73245	Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917	AT5G63290.1	Radical SAM superfamily protein 	LOC_Os12g17070.2	"radical SAM enzyme, putative, expressed"	NA	NA	GO:0006779|porphyrin biosynthetic process||GO:0055114|oxidation reduction	GO:0004109|coproporphyrinogen oxidase activity||GO:0051536|iron-sulfur cluster binding	GO:0005737|cytoplasm
PtpAffx.210623.1.S1_at	A	A1TS	POPTR_0012s09460	POPTR_0012s09460 (11)	scaffold_12:10489217-10489583(+) (11)	NA	Q84MA8	Adenine/guanine permease AZG2	AT5G50300.1	Xanthine/uracil permease family protein 	LOC_Os11g24060.1	"permease domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210624.1.S1_at	A	A1TS	POPTR_0012s09470	POPTR_0012s09470 (11)	scaffold_12:10490856-10491448(-) (11)	NA	Q5N6V0	B3 domain-containing protein Os01g0905400	NA	NA	LOC_Os01g67830.1	"B3 DNA binding domain containing protein, expressed"	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.210625.1.S1_at	A	A1TS	POPTR_0012s09480	POPTR_0012s09480 (11)	scaffold_12:10499285-10500374(+) (11)	NA	NA	NA	AT1G24440.1	RING/U-box superfamily protein 	LOC_Os07g17400.2	"zinc finger, RING-type, putative, expressed"	Medtr3g102930.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210626.1.S1_at	A	A1TS	POPTR_0012s09550	POPTR_0012s09550 (11)	scaffold_12:10533098-10533614(-) (11)	NA	Q5BN22	DELLA protein RGA2	AT1G66350.1	RGA-like 1 	LOC_Os01g67650.1	"gibberellin response modulator protein, putative"	Medtr8g109760.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210627.1.S1_at	A	A1TS	POPTR_0012s09550	POPTR_0012s09550 (11)	scaffold_12:10534177-10534486(-) (11)	NA	Q5BN22	DELLA protein RGA2	AT1G66350.1	RGA-like 1 	LOC_Os01g67650.1	"gibberellin response modulator protein, putative"	Medtr8g109760.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210628.1.S1_at	A	A1TS	POPTR_0012s09580	POPTR_0012s09580 (11)	scaffold_12:10565494-10566177(+) (11)	NA	NA	NA	AT5G50350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os06g40740.1	expressed protein	Medtr8g047880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210629.1.S1_at	A	A1TS	POPTR_0012s09590	POPTR_0012s09590 (11)	scaffold_12:10568455-10568779(-) (11)	NA	NA	NA	AT3G01770.1	bromodomain and extraterminal domain protein 10 	LOC_Os08g03360.1	"ATBET9, putative, expressed"	Medtr2g021880.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210630.1.S1_at	A	A1TS	POPTR_0012s09630	POPTR_0012s09630 (11)	scaffold_12:10600754-10601322(+) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210631.1.S1_s_at	A	A1TS	POPTR_0012s09650	POPTR_0012s09650 (11)	scaffold_12:10616413-10616579(-) (11)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117330.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.210631.1.S1_x_at	A	A1TS	POPTR_0012s09650	POPTR_0012s09650 (11)	scaffold_12:10616272-10617412(-) (11)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117330.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.210632.1.S1_at	A	A1MS	POPTR_0012s09670	POPTR_0012s09670 (11)	scaffold_12:10628100-10637713(-) (11)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117340.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.210632.1.S1_x_at	A	A1MS	POPTR_0012s09670	POPTR_0012s09670 (11)	scaffold_12:10628017-10637713(-) (11)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117340.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.210633.1.S1_at	A	A1MS	POPTR_0012s09670	POPTR_0012s09670 (11)	scaffold_12:10629049-10638895(-) (11)	POPTR_0012s09660 (7)	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117340.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.210634.1.S1_at	A	A1TS	POPTR_0012s09680	POPTR_0012s09680 (11)	scaffold_12:10648475-10650567(+) (11)	NA	Q58D06	WD repeat-containing protein 74	AT1G29320.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g32350.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210636.1.S1_at	A	A1TS	POPTR_0012s09730	POPTR_0012s09730 (11)	scaffold_12:10678525-10679373(-) (11)	NA	O94514	Nucleolar protein 56	AT1G56110.1	homolog of nucleolar protein NOP56 	LOC_Os03g22880.1	"nucleolar protein 5A, putative, expressed"	Medtr8g109560.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOP5, N-terminal; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210637.1.S1_at	A	A1TS	POPTR_0012s09750	POPTR_0012s09750 (11)	scaffold_12:10688645-10689171(+) (11)	NA	Q5R7Z6	Asparagine-linked glycosylation protein 11 homolog	AT2G40190.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os12g39340.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC235758_13.1	"Glycosyl transferase, group 1 AC235758.1 63451-61484 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
PtpAffx.210638.1.S1_at	A	A1TS	POPTR_0012s09760	POPTR_0012s09760 (11)	scaffold_12:10699909-10701268(+) (11)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT5G63410.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g20360.2	expressed protein	Medtr3g117370.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210639.1.S1_at	A	A1TS	POPTR_0012s09770	POPTR_0012s09770 (11)	scaffold_12:10702222-10703355(-) (11)	NA	NA	NA	AT3G01820.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g02540.1	"adenylate kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210640.1.S1_at	A	A1TS	POPTR_0012s09790	POPTR_0012s09790 (11)	scaffold_12:10718414-10718570(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210640.1.S1_x_at	A	A1TS	POPTR_0012s09790	POPTR_0012s09790 (11)	scaffold_12:10718333-10718616(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210642.1.S1_at	A	A1TS	POPTR_0012s09810	POPTR_0012s09810 (11)	scaffold_12:10729844-10730680(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210643.1.S1_at	A	A1TS	POPTR_0012s09870	POPTR_0012s09870 (11)	scaffold_12:10766341-10767112(+) (11)	NA	Q9FMT4	SWI/SNF complex component SNF12 homolog	AT5G14170.1	SWIB/MDM2 domain superfamily protein 	LOC_Os04g31320.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr8g109310.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210643.1.S1_s_at	A	A2TS	POPTR_0012s09870	POPTR_0015s10660 (11)//POPTR_0012s09870 (11)	scaffold_12:10766366-10767096(+) (11)//scaffold_15:11527222-11527945(+) (11)	NA	Q9FMT4	SWI/SNF complex component SNF12 homolog	AT5G14170.1	SWIB/MDM2 domain superfamily protein 	LOC_Os04g31320.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr8g109310.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210643.1.S1_x_at	A	A1TS	POPTR_0012s09870	POPTR_0012s09870 (11)	scaffold_12:10766343-10767129(+) (11)	NA	Q9FMT4	SWI/SNF complex component SNF12 homolog	AT5G14170.1	SWIB/MDM2 domain superfamily protein 	LOC_Os04g31320.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr8g109310.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210644.1.S1_at	A	A1TS	POPTR_0012s09880	POPTR_0012s09880 (11)	scaffold_12:10776290-10776827(-) (11)	NA	O81117	Cytochrome P450 94A1	AT3G48520.1	"cytochrome P450, family 94, subfamily B, polypeptide 3 "	LOC_Os11g29290.1	"cytochrome P450, putative, expressed"	Medtr3g109650.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.210645.1.S1_at	A	A1TS	POPTR_0012s09910	POPTR_0012s09910 (11)	scaffold_12:10797086-10797642(-) (11)	NA	O54922	Exocyst complex component 7	AT5G50380.1	exocyst subunit exo70 family protein F1 	LOC_Os04g31330.1	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr8g109240.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.210646.1.S1_at	A	A1TS	POPTR_0012s09920	POPTR_0012s09920 (11)	scaffold_12:10806886-10807131(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g41840.1	expressed protein	Medtr3g117610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210646.1.S1_s_at	A	A1TS	POPTR_0012s09920	POPTR_0012s09920 (11)	scaffold_12:10807131-10807890(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g41840.1	expressed protein	Medtr3g117610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210647.1.S1_s_at	A	A1TS	POPTR_0012s09940	POPTR_0012s09940 (11)	scaffold_12:10820429-10821435(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os08g41880.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g109230.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.210648.1.S1_at	A	A1TS	POPTR_0012s09960	POPTR_0012s09960 (11)	scaffold_12:10842226-10842537(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.210651.1.S1_at	A	A1MS	POPTR_0012s10010	POPTR_0012s10010 (11)	scaffold_12:10889796-10890067(-) (11)	NA	NA	NA	AT4G24910.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g103910.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210652.1.S1_s_at	A	A1TS	POPTR_0012s10000	POPTR_0012s10000 (11)	scaffold_12:10885823-10886514(+) (11)	NA	NA	NA	AT4G24900.1	unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os09g32940.1	expressed protein	Medtr2g052660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210653.1.S1_at	A	A1TS	POPTR_0012s10021	POPTR_0012s10021 (11)	scaffold_12:10898207-10898638(+) (11)	NA	NA	NA	AT4G37100.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os11g29630.1	expressed protein	Medtr3g150560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210654.1.S1_at	A	A1TS	POPTR_0012s10060	POPTR_0012s10060 (11)	scaffold_12:10921450-10921872(-) (11)	NA	Q9QYI4	DnaJ homolog subfamily B member 12	AT5G53150.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os04g31940.1	"dnaJ domain containing protein, expressed"	Medtr3g124470.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.210656.1.S1_at	A	A1TS	POPTR_0012s10100	POPTR_0012s10100 (11)	scaffold_12:10945779-10947061(+) (11)	NA	NA	NA	AT5G63480.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g31910.1	expressed protein	Medtr3g150660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210657.1.S1_at	A	A1TS	POPTR_0012s10120	POPTR_0012s10120 (11)	scaffold_12:10955198-10955642(+) (11)	NA	Q9FLA2	Putative F-box/FBD/LRR-repeat protein At5g44950	AT5G44950.1	F-box/RNI-like/FBD-like domains-containing protein 	LOC_Os01g52980.1	"OsFBX23 - F-box domain containing protein, expressed"	Medtr6g006290.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210658.1.S1_at	A	A1TS	POPTR_0012s10130	POPTR_0012s10130 (11)	scaffold_12:10956402-10956988(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210659.1.S1_at	A	A1TS	POPTR_0012s10140	POPTR_0012s10140 (11)	scaffold_12:10962319-10962472(-) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT5G50530.1	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os01g69900.1	"CBS domain-containing protein, putative, expressed"	Medtr3g150700.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210660.1.S1_at	A	A1TS	POPTR_0012s10150	POPTR_0012s10150 (11)	scaffold_12:10981041-10981318(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g13540.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210663.1.S1_at	A	A1TS	POPTR_0012s10240	POPTR_0012s10240 (11)	scaffold_12:11058533-11059254(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210664.1.S1_at	A	A1TS	POPTR_0012s10250	POPTR_0012s10250 (11)	scaffold_12:11063579-11063884(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210664.1.S1_x_at	A	A1TS	POPTR_0012s10250	POPTR_0012s10250 (11)	scaffold_12:11063580-11063884(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210665.1.S1_at	A	A1TS	POPTR_0012s10260	POPTR_0012s10260 (11)	scaffold_12:11070693-11071223(-) (11)	NA	Q8LFW6	Squamosa promoter-binding-like protein 13	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.210666.1.S1_at	A	A1TS	POPTR_0012s10280	POPTR_0012s10280 (11)	scaffold_12:11089033-11089499(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g150780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210667.1.S1_at	A	A1TS	POPTR_0012s10310	POPTR_0012s10310 (11)	scaffold_12:11105105-11105730(-) (11)	NA	NA	NA	AT5G13090.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g29810.1	conserved hypothetical protein	Medtr2g029450.1	"protein F12F1.11 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210670.1.S1_at	A	A1TS	POPTR_0012s10400	POPTR_0012s10400 (11)	scaffold_12:11182329-11183181(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210671.1.S1_at	A	A1TS	POPTR_0012s10410	POPTR_0012s10410 (11)	scaffold_12:11187780-11188138(+) (11)	NA	Q7M443	Chitinase 2	NA	NA	LOC_Os10g28050.1	"chitinase 2, putative, expressed"	Medtr6g089840.1	"Glycoside hydrolase, chitinase active site; Ribosomal protein S2 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.210672.1.S1_at	A	A1TS	POPTR_0012s10420	POPTR_0012s10420 (11)	scaffold_12:11202038-11202244(+) (11)	NA	P35659	Protein DEK	AT3G48710.1	DEK domain-containing chromatin associated protein 	LOC_Os01g70020.1	"DEK C terminal domain containing protein, expressed"	Medtr3g150850.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210673.1.S1_at	A	A1TS	POPTR_0012s10440	POPTR_0012s10440 (11)	scaffold_12:11206053-11206714(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210674.1.S1_at	A	A1TS	POPTR_0012s10450	POPTR_0012s10450 (11)	scaffold_12:11210885-11211017(-) (11)	NA	NA	NA	AT5G50760.1	SAUR-like auxin-responsive protein family  	LOC_Os01g70050.1	OsSAUR3 - Auxin-responsive SAUR gene family member	Medtr3g150870.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210674.1.S1_x_at	A	A1TS	POPTR_0012s10450	POPTR_0012s10450 (11)	scaffold_12:11210887-11211057(-) (11)	NA	NA	NA	AT5G50760.1	SAUR-like auxin-responsive protein family  	LOC_Os01g70050.1	OsSAUR3 - Auxin-responsive SAUR gene family member	Medtr3g150870.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210675.1.S1_at	A	A1TS	POPTR_0012s10460	POPTR_0012s10460 (11)	scaffold_12:11229907-11231292(+) (11)	NA	Q8BMD7	MORC family CW-type zinc finger protein 4	AT5G50780.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os02g27000.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210676.1.S1_at	A	A1TS	POPTR_0012s10470	POPTR_0012s10470 (11)	scaffold_12:11235245-11236780(+) (11)	NA	NA	NA	AT1G32583.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g28750.1	"TPD1, putative, expressed"	Medtr3g150890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210677.1.S1_at	A	A1TS	POPTR_0012s10500	POPTR_0012s10500 (9)	scaffold_12:11253465-11254237(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT5G50790.1	Nodulin MtN3 family protein 	LOC_Os11g31190.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g150920.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210678.1.S1_at	A	A1TS	POPTR_0012s10530	POPTR_0012s10530 (11)	scaffold_12:11277067-11277853(+) (11)	NA	O49255	NAC domain-containing protein 29	AT5G13180.1	NAC domain containing protein 83 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.210679.1.S1_at	A	A1TS	POPTR_0012s10540	POPTR_0012s10540 (11)	scaffold_12:11280821-11281327(+) (11)	NA	NA	NA	AT5G50830.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4984 Blast hits to 3288 proteins in 342 species: Archae - 12; Bacteria - 257; Metazoa - 1366; Fungi - 452; Plants - 199; Viruses - 77; Other Eukaryotes - 2621 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210680.1.S1_at	A	A1TS	POPTR_0012s10550	POPTR_0012s10550 (11)	scaffold_12:11283958-11284363(-) (11)	NA	NA	NA	AT3G48770.1	DNA binding;ATP binding 	LOC_Os11g31480.1	"ATP binding protein, putative, expressed"	Medtr8g011570.1	"Proteinase inhibitor I3, Kunitz legume; ATP-binding region, ATPase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210681.1.S1_at	A	A1TS	POPTR_0012s10560	POPTR_0012s10560 (11)	scaffold_12:11293722-11294430(-) (11)	NA	NA	NA	AT3G48770.1	DNA binding;ATP binding 	LOC_Os11g31480.1	"ATP binding protein, putative, expressed"	Medtr8g011720.1	"ATP-binding region, ATPase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210682.1.S1_x_at	A	A1TS	POPTR_0012s10580	POPTR_0012s10580 (11)	scaffold_12:11312044-11312643(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210683.1.S1_at	A	A1TS	POPTR_0012s10600	POPTR_0012s10600 (11)	scaffold_12:11327189-11328281(+) (11)	NA	Q5BIM2	Uncharacterized protein KIAA1539 homolog	AT5G41110.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26890.5); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g33520.1	expressed protein	Medtr7g094450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210684.1.S1_at	A	A1TS	POPTR_0012s10620	POPTR_0012s10620 (11)	scaffold_12:11338461-11338989(-) (11)	NA	Q9C9A6	U-box domain-containing protein 10	AT5G50900.1	ARM repeat superfamily protein 	LOC_Os03g02580.1	"armadillo, putative"	Medtr3g151140.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210685.1.S1_at	A	A1TS	POPTR_0012s10650	POPTR_0012s10650 (11)	scaffold_12:11362709-11362985(-) (11)	NA	NA	NA	AT3G48800.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os03g63320.1	"SAM domain containing protein, putative, expressed"	Medtr4g152000.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210687.1.S1_at	A	A1TS	POPTR_0012s10670	POPTR_0012s10670 (11)	scaffold_12:11380944-11381901(-) (11)	NA	Q93W88	Transcription factor bHLH137	AT5G50915.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g42470.1	"BEE 1, putative, expressed"	Medtr4g152040.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.210688.1.S1_at	A	A1TS	POPTR_0012s10680	POPTR_0012s10680 (11)	scaffold_12:11399231-11401343(+) (11)	NA	P0ABF1	Poly(A) polymerase	AT5G23690.1	Polynucleotide adenylyltransferase family protein 	LOC_Os04g32490.2	"tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed"	Medtr4g152060.1	Polynucleotide adenylyltransferase region 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0016779|nucleotidyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.210689.1.S1_at	A	A1TS	POPTR_0012s10700	POPTR_0012s10700 (11)	scaffold_12:11409611-11410050(+) (11)	NA	P63975	DNA polymerase III subunit gamma/tau	AT4G24790.2	AAA-type ATPase family protein 	LOC_Os11g13990.1	"AAA-type ATPase family protein, putative, expressed"	Medtr8g110070.1	"AAA ATPase; DNA polymerase III clamp loader subunit, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210690.1.S1_at	A	A1TS	POPTR_0012s10730	POPTR_0012s10730 (11)	scaffold_12:11434305-11435283(+) (11)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.210691.1.S1_at	A	A1TS	POPTR_0012s10760	POPTR_0012s10760 (11)	scaffold_12:11453980-11455098(+) (11)	NA	Q6B8I1	Dual specificity protein phosphatase 13 isoform MDSP	AT5G23720.1	dual specificity protein phosphatase family protein 	LOC_Os01g20940.1	"PHS1, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.210692.1.S1_at	A	A1TS	POPTR_0012s10770	POPTR_0012s10770 (11)	scaffold_12:11455684-11455889(-) (11)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
PtpAffx.210693.1.S1_at	A	A1TS	POPTR_0012s10790	POPTR_0012s10790 (11)	scaffold_12:11478396-11478758(-) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os01g70270.3	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.210694.1.S1_at	A	A1TS	POPTR_0012s10820	POPTR_0012s10820 (11)	scaffold_12:11524671-11525767(-) (11)	NA	NA	NA	AT5G13980.2	Glycosyl hydrolase family 38 protein 	LOC_Os11g32260.1	"lysosomal alpha-mannosidase precursor, putative, expressed"	Medtr3g151240.1	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210695.1.S1_at	A	A1TS	POPTR_0012s10860	POPTR_0012s10860 (11)	scaffold_12:11549868-11550392(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g17070.1	hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210696.1.S1_at	A	A1TS	POPTR_0012s10870	POPTR_0012s10870 (11)	scaffold_12:11551677-11552174(+) (11)	NA	Q9FVS1	F-box/kelch-repeat protein At1g57790	AT1G57790.1	F-box family protein 	LOC_Os08g34860.1	OsFBX293 - F-box domain containing protein	Medtr2g025180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210697.1.S1_s_at	A	A1TS	POPTR_0012s10940	POPTR_0012s10940 (11)	scaffold_12:11594466-11594812(+) (11)	NA	P52423	"Phosphoribosylglycinamide formyltransferase, chloroplastic"	AT1G31220.1	Formyl transferase 	LOC_Os08g39160.1	"formyl transferase, putative, expressed"	Medtr1g008220.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.210698.1.S1_at	A	A1TS	POPTR_0012s10960	POPTR_0012s10960 (11)	scaffold_12:11605117-11605374(+) (11)	NA	NA	NA	AT4G23490.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr5g010170.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210699.1.S1_at	A	A1TS	POPTR_0012s10980	POPTR_0012s10980 (11)	scaffold_12:11613533-11614092(+) (11)	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210700.1.S1_at	A	A1TS	POPTR_0012s10990	POPTR_0012s10990 (11)	scaffold_12:11622417-11623089(+) (11)	NA	NA	NA	AT5G50970.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g63470.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g151320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210701.1.S1_at	A	A1TS	POPTR_0012s11070	POPTR_0012s11070 (11)	scaffold_12:11678032-11679523(-) (11)	NA	NA	NA	AT5G61865.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210702.1.S1_at	A	A1TS	POPTR_0012s11080	POPTR_0012s11080 (11)	scaffold_12:11685280-11685638(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210703.1.S1_at	A	A1TS	POPTR_0012s11110	POPTR_0012s11110 (11)	scaffold_12:11695246-11695803(-) (11)	NA	Q9FI49	Pentatricopeptide repeat-containing protein At5g50990	AT5G50990.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g44299.1	"pentatricopeptide, putative"	Medtr4g005700.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210704.1.S1_at	A	A1TS	POPTR_0012s11140	POPTR_0012s11140 (10)	scaffold_12:11708982-11709383(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210705.1.S1_at	A	A1MS	POPTR_0012s11150	POPTR_0012s11150 (10)	scaffold_12:11715898-11716962(+) (10)	NA	NA	NA	AT5G51010.1	Rubredoxin-like superfamily protein 	LOC_Os11g32500.1	"rubredoxin family protein, putative, expressed"	Medtr3g151410.1	Rubredoxin-type Fe(Cys)4 protein 	NA	NA	GO:0016020|membrane
PtpAffx.210707.1.S1_s_at	A	A2TS	POPTR_0008s19700	POPTR_0012s11180 (11)//POPTR_0008s19700 (11)	scaffold_12:11725884-11726006(+) (11)//scaffold_8:13590274-13590396(+) (11)	NA	Q9FEF8	rRNA 2'-O-methyltransferase fibrillarin 1	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.210708.1.S1_at	A	A1TS	POPTR_0012s11190	POPTR_0012s11190 (11)	scaffold_12:11727785-11728335(+) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os02g45770.1	"OsMADS6 - MADS-box family gene with MIKCc type-box, expressed"	Medtr2g100580.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.210708.1.S1_s_at	A	A2TS	POPTR_0006s27460	POPTR_0006s27460 (11)//POPTR_0012s11190 (11)	scaffold_12:11728180-11728321(+) (11)//scaffold_6:25358498-25358639(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210709.1.S1_at	A	A1TS	POPTR_0012s11200	POPTR_0012s11200 (11)	scaffold_12:11731042-11732168(-) (11)	NA	Q9ZUH5	Short-chain dehydrogenase/reductase 2	AT5G51030.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g70430.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g151460.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.210710.1.S1_at	A	A1TS	POPTR_0012s11260	POPTR_0012s11260 (11)	scaffold_12:11783470-11783935(+) (11)	NA	Q9FLS9	Pentatricopeptide repeat-containing protein At5g61800	AT5G61800.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g32870.1	"pentatricopeptide repeat-containing protein, putative"	Medtr5g020540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210711.1.S1_at	A	A1TS	POPTR_0012s11270	POPTR_0012s11270 (10)	scaffold_12:11785359-11785909(+) (11)	NA	NA	NA	AT5G07330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g32890.1	expressed protein	Medtr5g006680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210712.1.S1_at	A	A1TS	POPTR_0012s11310	POPTR_0012s11310 (9)	scaffold_12:11806626-11808064(-) (11)	NA	NA	NA	AT5G07360.2	Amidase family protein 	LOC_Os11g33090.1	"amidase, putative, expressed"	Medtr4g145040.1	Amidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210714.1.S1_at	A	A1TS	POPTR_0012s11350	POPTR_0012s11350 (11)	scaffold_12:11833096-11833432(+) (11)	NA	NA	NA	AT5G07400.1	forkhead-associated domain-containing protein / FHA domain-containing protein 	LOC_Os04g33050.1	"HIRAN domain containing protein, putative, expressed"	Medtr4g144690.1	Forkhead-associated; Tyrosyl-DNA phosphodiesterase 	NA	"GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides""||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding"	NA
PtpAffx.210716.1.S1_s_at	A	A1TS	POPTR_0012s11390	POPTR_0012s11390 (11)	scaffold_12:11849363-11849964(-) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr2g009030.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.210722.1.S1_s_at	A	A3TS	POPTR_0012s11470	POPTR_0012s12710 (11)//POPTR_0012s11470 (11)//POPTR_0012s12750 (9)	scaffold_12:11889209-11889653(-) (11)//scaffold_12:13161591-13162001(+) (11)//scaffold_12:13172390-13172800(+) (11)	NA	Q6WG30	Taxadiene 5-alpha hydroxylase	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33440.1	"cytochrome P450, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.210723.1.S1_at	A	A1TS	POPTR_0012s12800	POPTR_0012s12800 (11)	scaffold_12:13209972-13210525(-) (11)	NA	NA	NA	AT5G54370.1	Late embryogenesis abundant (LEA) protein-related 	LOC_Os01g73720.1	"RCLEA4 - Root cap and Late embryogenesis related family protein precursor, expressed"	Medtr4g081530.1	Root cap 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210726.1.S1_at	A	A1TS	POPTR_0012s12920	POPTR_0012s12920 (11)	scaffold_12:13284979-13285142(+) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT5G52430.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g57610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210727.1.S1_at	A	A1TS	POPTR_0012s12940	POPTR_0012s12940 (10)	scaffold_12:13289772-13290603(+) (10)	NA	Q54GU0	Putative transporter arsB	AT1G02260.1	Divalent ion symporter 	LOC_Os03g05390.6	"Citrate transporter protein, putative, expressed"	Medtr8g039530.1	Citrate transporter 	GO:0015746|citrate transport	GO:0015137|citrate transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.210728.1.S1_at	A	A1TS	POPTR_0012s12980	POPTR_0012s12980 (10)	scaffold_12:13306354-13312056(-) (11)	NA	Q9NZC7	WW domain-containing oxidoreductase	AT4G23430.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210729.1.S1_at	A	A1TS	POPTR_0012s12990	POPTR_0012s12990 (11)	scaffold_12:13319532-13320974(+) (11)	NA	Q8LF97	SKP1-like protein 21	AT3G61415.1	SKP1-like 21 	LOC_Os03g01660.1	"SKP1, putative, expressed"	Medtr8g031960.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.210730.1.S1_at	A	A1TS	POPTR_0012s13010	POPTR_0012s13010 (10)	scaffold_12:13330482-13330820(-) (10)	NA	NA	NA	AT4G25610.1	C2H2-like zinc finger protein 	LOC_Os09g39660.2	"ZOS9-21 - C2H2 zinc finger protein, expressed"	Medtr1g126780.1	hypothetical protein 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.210731.1.S1_at	A	A1TS	POPTR_0012s13020	POPTR_0012s13020 (11)	scaffold_12:13336205-13336898(-) (11)	NA	Q94A51	U-box domain-containing protein 32	AT3G49060.1	U-box domain-containing protein kinase family protein 	LOC_Os09g39640.1	"protein kinase, putative, expressed"	Medtr1g126790.1	Tyrosine protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.210732.1.S1_at	A	A1MS	POPTR_0012s13035	POPTR_0012s13035 (10)	scaffold_12:13347659-13347982(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210733.1.S1_at	A	A1TS	POPTR_0012s13090	POPTR_0012s13090 (11)	scaffold_12:13384976-13386296(+) (11)	NA	Q8R116	Protein notum homolog	AT5G23870.3	Pectinacetylesterase family protein 	LOC_Os02g47400.1	"pectinacetylesterase domain containing protein, expressed"	Medtr1g127000.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210734.1.S1_at	A	A1TS	POPTR_0012s13110	POPTR_0012s13110 (11)	scaffold_12:13400636-13400925(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g127040.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210735.1.S1_at	A	A1TS	POPTR_0012s13130	POPTR_0012s13130 (11)	scaffold_12:13402604-13403012(-) (11)	NA	Q05047	Secologanin synthase	AT5G52400.1	"cytochrome P450, family 715, subfamily A, polypeptide 1 "	LOC_Os02g57810.1	"cytochrome P450, putative"	Medtr1g127040.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.210737.1.S1_at	A	A1TS	POPTR_0012s13180	POPTR_0012s13180 (11)	scaffold_12:13447582-13447884(-) (11)	NA	Q04980	Low-temperature-induced 65 kDa protein	AT5G52300.2	CAP160 protein 	LOC_Os10g36180.1	expressed protein	AC235674_13.1	hypothetical protein AC235674.1 71786-63477 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210737.1.S1_x_at	A	A1TS	POPTR_0012s13180	POPTR_0012s13180 (11)	scaffold_12:13447582-13448070(-) (11)	NA	Q04980	Low-temperature-induced 65 kDa protein	AT5G52300.2	CAP160 protein 	LOC_Os10g36180.1	expressed protein	AC235674_13.1	hypothetical protein AC235674.1 71786-63477 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210738.1.S1_at	A	A1TS	POPTR_0012s13190	POPTR_0012s13190 (11)	scaffold_12:13457244-13457830(+) (11)	NA	NA	NA	AT5G52290.1	shortage in chiasmata 1 	LOC_Os02g42910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210739.1.S1_at	A	A1TS	POPTR_0012s13200	POPTR_0012s13200 (11)	scaffold_12:13458468-13459209(-) (11)	NA	NA	NA	AT5G52280.1	Myosin heavy chain-related protein 	LOC_Os10g36060.1	"protein transport protein-related, putative, expressed"	Medtr5g010660.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.210740.1.S1_at	A	A1TS	POPTR_0012s13220	POPTR_0012s13220 (11)	scaffold_12:13472868-13473457(+) (11)	NA	P93788	Remorin	AT3G48940.1	Remorin family protein 	LOC_Os02g57840.2	"remorin C-terminal domain containing protein, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210741.1.S1_at	A	A1TS	POPTR_0012s13250	POPTR_0012s13250 (11)	scaffold_12:13486870-13487987(+) (11)	NA	Q94AU2	25.3 kDa vesicle transport protein	AT5G52270.1	SNARE-like superfamily protein 	LOC_Os03g57760.2	"25.3 kDa vesicle transport protein, putative, expressed"	Medtr8g025760.1	Synaptobrevin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210742.1.S1_at	A	A1TS	POPTR_0012s13260	POPTR_0012s13260 (11)	scaffold_12:13490089-13491032(-) (11)	NA	Q9M0K4	Transcription factor LAF1	AT5G52260.1	myb domain protein 19 	LOC_Os04g45020.1	"MYB family transcription factor, putative, expressed"	Medtr6g059750.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210742.1.S1_x_at	A	A1TS	POPTR_0012s13260	POPTR_0012s13260 (11)	scaffold_12:13489525-13491032(-) (11)	NA	Q9M0K4	Transcription factor LAF1	AT5G52260.1	myb domain protein 19 	LOC_Os04g45020.1	"MYB family transcription factor, putative, expressed"	Medtr6g059750.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210743.1.S1_at	A	A1TS	POPTR_0012s13270	POPTR_0012s13270 (11)	scaffold_12:13504415-13504860(+) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g38310.1	"pentatricopeptide, putative, expressed"	Medtr5g020540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210744.1.S1_at	A	A1TS	POPTR_0012s13290	POPTR_0012s13290 (11)	scaffold_12:13510725-13511238(-) (11)	NA	P93471	E3 ubiquitin-protein ligase COP1	AT5G23730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g02380.1	"suppressor of phythchrome A, putative"	Medtr5g092630.1	"Zinc finger, RING-type; WD40-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210745.1.S1_at	A	A1MS	POPTR_0012s13310	POPTR_0012s13310 (9)	scaffold_12:13516384-13516909(+) (9)//scaffold_2065:680-1229(-) (10)	NA	NA	NA	AT2G44380.1	Cysteine/Histidine-rich C1 domain family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210746.1.S1_at	A	A1TS	POPTR_0012s13360	POPTR_0012s13360 (10)	scaffold_12:13542287-13542619(-) (11)	NA	Q9FIT2	Putative non-specific lipid-transfer protein 14	AT5G62065.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g27940.1	"LTPL27 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr1g129270.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210747.1.S1_at	A	A1TS	POPTR_0012s13390	POPTR_0012s13390 (10)	scaffold_12:13561620-13562255(+) (10)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr1g129250.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.210748.1.S1_s_at	A	A1TS	POPTR_0012s13400	POPTR_0012s13400 (11)	scaffold_12:13563900-13564391(+) (11)	NA	NA	NA	AT4G33495.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os01g43040.1	"amino acid transporter, putative, expressed"	Medtr7g105350.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210749.1.S1_at	A	A1TS	POPTR_0012s13420	POPTR_0012s13420 (11)	scaffold_12:13584244-13584605(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G07280.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os01g68870.2	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210750.1.S1_at	A	A1TS	POPTR_0012s13430	POPTR_0012s13430 (11)	scaffold_12:13586413-13587028(-) (11)	NA	Q9SCW4	Heat stress transcription factor B-2a	AT5G62020.1	heat shock transcription factor  B2A 	LOC_Os08g43334.2	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g010870.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.210751.1.S1_at	A	A1TS	POPTR_0012s13140	POPTR_0012s13140 (11)	scaffold_12:13426338-13426917(+) (11)	NA	NA	NA	AT5G52390.1	PAR1 protein 	NA	NA	Medtr1g127100.1	PAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210752.1.S1_s_at	A	A1TS	POPTR_0012s13440	POPTR_0012s13440 (11)	scaffold_12:13604035-13604613(+) (11)	NA	P51090	Chalcone synthase	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004315|3-oxoacyl-[acyl-carrier-protein] synthase activity	NA
PtpAffx.210754.1.S1_at	A	A1TS	POPTR_0012s13550	POPTR_0012s13550 (11)	scaffold_12:13663512-13664341(-) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G38180.1	FAR1-related sequence 5 	LOC_Os07g42400.1	"transposon protein, putative, unclassified, expressed"	Medtr1g129290.1	"Zinc finger, PMZ-type "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.210755.1.S1_at	A	A1TS	POPTR_0012s13570	POPTR_0012s13570 (11)	scaffold_12:13673257-13674259(-) (11)	NA	Q9ZPH9	Probable methyltransferase PMT15	AT4G00750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.210756.1.S1_at	A	A1TS	POPTR_0012s13640	POPTR_0012s13640 (11)	scaffold_12:13709668-13710051(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210757.1.S1_at	A	A1TS	POPTR_0012s13650	POPTR_0012s13650 (11)	scaffold_12:13710986-13713099(+) (11)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT5G52140.1	RING/U-box superfamily protein 	LOC_Os04g48260.1	"zinc RING finger protein, putative, expressed"	Medtr8g037050.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210758.1.S1_at	A	A1TS	POPTR_0012s13660	POPTR_0012s13660 (11)	scaffold_12:13716424-13716652(-) (11)	NA	O64900	(S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26940.1	"cytochrome P450, putative, expressed"	Medtr8g050170.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210760.1.S1_at	A	A1TS	POPTR_0012s13700	POPTR_0012s13700 (10)	scaffold_12:13742284-13742835(-) (11)	NA	Q9LT89	Transcription factor TCP19	AT5G51910.2	TCP family transcription factor  	LOC_Os08g43160.1	"TCP family transcription factor, putative, expressed"	Medtr1g129720.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210761.1.S1_at	A	A1TS	POPTR_0012s13730	POPTR_0012s13730 (11)	scaffold_12:13756545-13757035(+) (11)	NA	Q9SZK1	Pentatricopeptide repeat-containing protein At4g38010	AT4G38010.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os04g41120.1	"pentatricopeptide, putative, expressed"	Medtr4g021980.1	Site-specific DNA-methyltransferase (cytosine-N4-specific) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210762.1.S1_at	A	A1TS	POPTR_0012s13740	POPTR_0012s13740 (11)	scaffold_12:13760492-13761099(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210763.1.S1_at	A	A1MS	POPTR_0012s13760	POPTR_0012s13760 (10)	scaffold_12:13768756-13769193(-) (10)	NA	Q9S746	Protein HOTHEAD	AT1G12570.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os06g44540.1	"HOTHEAD precursor, putative, expressed"	Medtr1g129660.1	Alcohol oxidase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.210764.1.S1_at	A	A1TS	POPTR_0012s13840	POPTR_0012s13840 (11)	scaffold_12:13816098-13816563(-) (11)	NA	Q8LPQ6	ABC transporter B family member 28	AT4G25450.3	non-intrinsic ABC protein 8 	LOC_Os07g28090.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC229695_27.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 AC229695.5 132649-127780 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210766.1.S1_at	A	A1TS	POPTR_0012s13880	POPTR_0012s13880 (11)	scaffold_12:13837824-13838036(-) (11)	NA	Q9FJ90	Ethylene-responsive transcription factor ERF025	AT5G52020.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g45420.1	"AP2 domain containing protein, expressed"	Medtr1g129460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.210767.1.S1_at	A	A1TS	POPTR_0012s13890	POPTR_0012s13890 (9)	scaffold_12:13842933-13843053(+) (11)	NA	Q99JY4	TraB domain-containing protein	AT5G52030.2	TraB family protein 	LOC_Os08g43230.1	"TraB family protein, putative, expressed"	Medtr1g129440.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210767.1.S1_s_at	A	A1TS	POPTR_0012s13890	POPTR_0012s13890 (11)	scaffold_12:13842641-13842937(+) (11)	NA	Q99JY4	TraB domain-containing protein	AT5G52030.2	TraB family protein 	LOC_Os08g43230.1	"TraB family protein, putative, expressed"	Medtr1g129440.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210768.1.S1_s_at	A	A1TS	POPTR_0012s13890	POPTR_0012s13890 (11)	scaffold_12:13843440-13844602(+) (11)	NA	Q99JY4	TraB domain-containing protein	AT5G52030.2	TraB family protein 	LOC_Os08g43230.1	"TraB family protein, putative, expressed"	Medtr1g129440.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210769.1.S1_at	A	A1TS	POPTR_0012s13900	POPTR_0012s13900 (11)	scaffold_12:13855150-13855788(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	LOC_Os03g12350.4	"two-component response regulator, putative, expressed"	Medtr7g027130.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210770.1.S1_at	A	A1TS	POPTR_0012s13910	POPTR_0012s13910 (11)	scaffold_12:13858416-13858504(+) (11)	NA	P59468	LOB domain-containing protein 24	AT3G26660.1	LOB domain-containing protein 24 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g100360.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210770.1.S1_s_at	A	A2TS	POPTR_0012s13910	POPTR_0015s13870 (11)//POPTR_0012s13910 (11)	scaffold_12:13857866-13858407(+) (11)//scaffold_15:13626976-13627723(+) (11)	NA	P59468	LOB domain-containing protein 24	AT3G26660.1	LOB domain-containing protein 24 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g100360.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210770.1.S1_x_at	A	A1TS	POPTR_0012s13910	POPTR_0012s13910 (11)	scaffold_12:13857899-13858504(+) (11)	NA	P59468	LOB domain-containing protein 24	AT3G26660.1	LOB domain-containing protein 24 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g100360.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210771.1.S1_at	A	A1TS	POPTR_0012s13930	POPTR_0012s13930 (11)	scaffold_12:13894224-13894712(+) (11)	NA	Q8K0H1	Multidrug and toxin extrusion protein 1	AT4G23030.1	MATE efflux family protein 	LOC_Os02g45380.1	"MATE domain containing protein, expressed"	Medtr1g129410.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.210772.1.S1_at	A	A1TS	POPTR_0012s13950	POPTR_0012s13950 (11)	scaffold_12:13940103-13941865(+) (11)	NA	Q9FJ82	"Putative dihydrodipicolinate reductase 3, chloroplastic"	AT5G52100.1	"Dihydrodipicolinate reductase, bacterial/plant "	LOC_Os03g02690.3	"dihydrodipicolinate reductase, putative, expressed"	Medtr1g129340.1	Dihydrodipicolinate reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210773.1.S1_at	A	A1TS	POPTR_0012s13960	POPTR_0012s13960 (11)	scaffold_12:13945560-13946000(+) (11)	NA	Q39547	Cucumisin	AT5G59090.2	subtilase 4.12 	LOC_Os06g41880.1	"OsSub51 - Putative Subtilisin homologue, expressed"	Medtr6g059570.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.210774.1.S1_at	A	A1TS	POPTR_0012s13990	POPTR_0012s13990 (11)	scaffold_12:13967985-13968578(-) (11)	NA	NA	NA	AT5G62170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 381 Blast hits to 359 proteins in 81 species: Archae - 0; Bacteria - 16; Metazoa - 101; Fungi - 21; Plants - 99; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink). 	NA	NA	Medtr1g129820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210775.1.S1_at	A	A1TS	POPTR_0012s14050	POPTR_0012s14050 (11)	scaffold_12:14049472-14050022(-) (11)	NA	NA	NA	AT5G51800.1	Protein kinase superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210776.1.S1_at	A	A1TS	POPTR_0012s14070	POPTR_0012s14070 (11)	scaffold_12:14079572-14080499(-) (11)	NA	Q9STJ6	Transcription factor bHLH126	AT4G25410.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr1g130330.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.210777.1.S1_at	A	A1TS	POPTR_0012s14080	POPTR_0012s14080 (11)	scaffold_12:14094365-14095129(-) (11)	NA	Q9STJ6	Transcription factor bHLH126	AT4G25410.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr1g130320.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.210778.1.S1_at	A	A1TS	POPTR_0012s14090	POPTR_0012s14090 (11)	scaffold_12:14101877-14102346(-) (11)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT4G25390.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	Medtr8g150930.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210780.1.S1_at	A	A1TS	POPTR_0012s14120	POPTR_0012s14120 (11)	scaffold_12:14124351-14124595(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210781.1.S1_at	A	A1TS	POPTR_0012s14150	POPTR_0012s14150 (11)	scaffold_12:14145589-14146129(+) (11)	NA	Q8GW72	Alpha-L-fucosidase 1	AT2G28100.1	alpha-L-fucosidase 1 	LOC_Os09g34920.1	"glycosyl hydrolase family 29, putative, expressed"	Medtr1g130150.1	"Glycoside hydrolase, family 29 (alpha-L-fucosidase) "	GO:0005975|carbohydrate metabolic process||GO:0007155|cell adhesion	GO:0004560|alpha-L-fucosidase activity	NA
PtpAffx.210782.1.S1_at	A	A1TS	POPTR_0012s14170	POPTR_0012s14170 (11)	scaffold_12:14154529-14155251(-) (11)	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os06g03930.1	"cytochrome P450 86A1, putative, expressed"	AC233070_8.1	Cytochrome P450 AC233070.4 41303-37114 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.210783.1.S1_at	A	A1TS	POPTR_0012s14180	POPTR_0012s14180 (11)	scaffold_12:14161004-14162896(-) (11)	NA	P36163	Mitochondrial metalloendopeptidase OMA1	AT5G51740.1	Peptidase family M48 family protein 	LOC_Os02g50230.1	"peptidase, putative, expressed"	Medtr6g067190.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
PtpAffx.210786.1.S1_at	A	A1TS	POPTR_0012s14250	POPTR_0012s14250 (11)	scaffold_12:14226092-14226638(+) (11)	NA	C0LGW6	LRR receptor-like serine/threonine-protein kinase ERL1	AT5G62230.1	ERECTA-like 1 	LOC_Os06g03970.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr1g019670.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210787.1.S1_at	A	A1TS	POPTR_0012s14270	POPTR_0012s14270 (11)	scaffold_12:14227576-14229001(-) (11)	NA	NA	NA	AT4G22860.1	Cell cycle regulated microtubule associated protein 	LOC_Os06g03980.1	expressed protein	Medtr8g106490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210789.1.S1_at	A	A1TS	POPTR_0012s14300	POPTR_0012s14300 (11)	scaffold_12:14237613-14238027(+) (11)	NA	O49663	Zinc finger A20 and AN1 domain-containing stress-associated protein 9	AT4G22820.2	A20/AN1-like zinc finger family protein 	LOC_Os03g57890.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g140780.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.210790.1.S1_at	A	A1TS	POPTR_0012s14330	POPTR_0012s14330 (11)	scaffold_12:14265523-14266040(+) (11)	NA	NA	NA	AT5G51640.1	Plant protein of unknown function (DUF828) 	LOC_Os01g68630.1	"leaf senescence related protein, putative, expressed"	Medtr6g067370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210790.1.S1_s_at	A	A1TS	POPTR_0012s14330	POPTR_0012s14330 (11)	scaffold_12:14265610-14265938(+) (11)	NA	NA	NA	AT5G51640.1	Plant protein of unknown function (DUF828) 	LOC_Os01g68630.1	"leaf senescence related protein, putative, expressed"	Medtr6g067370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210791.1.S1_at	A	A1TS	POPTR_0012s14340	POPTR_0012s14340 (11)	scaffold_12:14273458-14274604(+) (11)	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210791.1.S1_x_at	A	A1TS	POPTR_0012s14340	POPTR_0012s14340 (11)	scaffold_12:14273458-14274604(+) (11)	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210792.1.S1_at	A	A1TS	POPTR_0012s14360	POPTR_0012s14360 (11)	scaffold_12:14285132-14285532(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210793.1.S1_at	A	A1TS	POPTR_0012s14430	POPTR_0012s14430 (10)	scaffold_12:14323044-14323416(-) (10)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G51560.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210794.1.S1_at	A	A1TS	POPTR_0012s14530	POPTR_0012s14530 (11)	scaffold_12:14386226-14388577(+) (11)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT5G62310.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210795.1.S1_at	A	A1TS	POPTR_0012s14550	POPTR_0012s14550 (11)	scaffold_12:14410391-14410929(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g077590.1	UMP-CMP kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210796.1.S1_at	A	A1TS	POPTR_0012s14640	POPTR_0012s14640 (11)	scaffold_12:14449570-14450330(+) (11)	NA	Q6DIP3	RING finger protein 126	AT1G60360.1	RING/U-box superfamily protein 	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g007460.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210797.1.S1_at	A	A1TS	POPTR_0012s14660	POPTR_0012s14660 (11)	scaffold_12:14466971-14467447(+) (11)	NA	Q9FWX2	NAC domain-containing protein 7	AT1G12260.1	NAC 007 	LOC_Os02g42970.1	"NAC domain containing protein, putative"	Medtr8g106290.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.210798.1.S1_at	A	A1TS	POPTR_0012s14690	POPTR_0012s14690 (11)	scaffold_12:14486636-14487207(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210799.1.S1_at	A	A1TS	POPTR_0012s14760	POPTR_0012s14760 (11)	scaffold_12:14520249-14520453(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210800.1.S1_at	A	A1TS	POPTR_0012s14770	POPTR_0012s14770 (11)	scaffold_12:14522969-14524269(-) (11)	NA	Q9ATE5	MADS-box protein FBP24	AT5G23260.2	K-box region and MADS-box transcription factor family protein  	LOC_Os02g07430.2	"OsMADS29 - MADS-box family gene with MIKCc type-box, expressed"	Medtr1g046070.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.210802.1.S1_at	A	A2TS	POPTR_0012s14790	POPTR_0012s14790 (11)//POPTR_0007s02960 (10)	scaffold_12:14539448-14541677(+) (11)//scaffold_7:1726198-1728491(+) (10)	POPTR_0017s06930 (6)	Q8LFT2	Dynamin-related protein 3B	AT2G14120.1	dynamin related protein 	LOC_Os01g69130.1	"dynamin family protein, putative, expressed"	Medtr2g009740.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.210803.1.S1_s_at	A	A1TS	POPTR_0012s14830	POPTR_0012s14830 (11)	scaffold_12:14556730-14556945(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210804.1.S1_at	A	A1TS	POPTR_0012s14820	POPTR_0012s14820 (11)	scaffold_12:14554227-14555192(-) (11)//scaffold_6:24430403-24430686(+) (9)	NA	P92960	Potassium channel KAT3	AT4G32650.3	potassium channel in Arabidopsis thaliana 3 	LOC_Os06g14310.1	"potassium channel AKT1, putative"	Medtr3g135850.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210804.1.S1_s_at	A	A2TS	POPTR_0006s26140	POPTR_0012s14820 (11)//POPTR_0006s26140 (11)	scaffold_12:14554125-14555407(-) (11)//scaffold_6:24429514-24430788(+) (11)	NA	P92960	Potassium channel KAT3	AT4G32650.3	potassium channel in Arabidopsis thaliana 3 	LOC_Os01g52070.1	"potassium channel AKT1, putative, expressed"	Medtr3g135850.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.210805.1.S1_at	A	A1TS	POPTR_0012s14830	POPTR_0012s14830 (11)	scaffold_12:14557220-14558046(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210806.1.S1_at	A	A1TS	POPTR_0012s14840	POPTR_0012s14840 (11)	scaffold_12:14566494-14568792(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210807.1.S1_at	A	A1TS	POPTR_0012s14850	POPTR_0012s14850 (11)	scaffold_12:14570371-14572080(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210809.1.S1_at	A	A1TS	POPTR_0012s14890	POPTR_0012s14890 (11)	scaffold_12:14596677-14597953(+) (11)	NA	Q5S2C4	Protein NAP1	AT2G35110.1	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210810.1.S1_at	A	A1TS	POPTR_0012s14910	POPTR_0012s14910 (11)	scaffold_12:14621746-14622428(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210811.1.S1_at	A	A1MS	POPTR_0012s14950	POPTR_0012s14950 (11)	scaffold_12:14648690-14649046(+) (11)	NA	P27879	18.1 kDa class I heat shock protein (Fragment)	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067230.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210812.1.S1_s_at	A	A2TS	POPTR_0012s12330	POPTR_0012s12330 (11)//POPTR_0012s14970 (11)	scaffold_12:12540550-12541377(+) (11)//scaffold_12:14655731-14656558(-) (11)	NA	O82178	Pentatricopeptide repeat-containing protein At2g35130	AT2G35130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g07360.1	"pentatricopeptide containing protein, putative, expressed"	Medtr2g041460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210813.1.S1_at	A	A1TS	POPTR_0012s14970	POPTR_0012s14970 (11)	scaffold_12:14658259-14659125(-) (11)	NA	O82178	Pentatricopeptide repeat-containing protein At2g35130	AT2G35130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g07360.1	"pentatricopeptide containing protein, putative, expressed"	Medtr2g041460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210813.1.S1_s_at	A	A2TS	POPTR_0012s14970	POPTR_0012s14970 (11)//POPTR_0012s12330 (10)	scaffold_12:12538862-12539297(+) (11)//scaffold_12:14657811-14658246(-) (11)	NA	O82178	Pentatricopeptide repeat-containing protein At2g35130	AT2G35130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g07360.1	"pentatricopeptide containing protein, putative, expressed"	Medtr2g041460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210814.1.S1_at	A	A1TS	POPTR_0012s14990	POPTR_0012s14990 (10)	scaffold_12:14665354-14665841(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210815.1.S1_at	A	A2TS	POPTR_0012s12360	POPTR_0012s12360 (11)//POPTR_0012s15000 (11)	scaffold_12:12581144-12581636(+) (11)//scaffold_12:14682869-14683361(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os04g43340.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g043920.1	"Peptidase aspartic, active site; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210816.1.S1_at	A	A1TS	POPTR_0012s15060	POPTR_0012s15060 (10)	scaffold_12:12576399-12577144(-) (10)//scaffold_12:14714324-14715026(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210819.1.S1_at	A	A1TS	POPTR_0012s15080	POPTR_0012s15080 (11)	scaffold_12:14725014-14725521(-) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g021980.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210820.1.S1_at	A	A1TS	POPTR_0013s00200	POPTR_0013s00200 (10)	scaffold_13:5819-6252(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g134610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210821.1.S1_at	A	A1TS	POPTR_0013s00210	POPTR_0013s00210 (11)	scaffold_13:13827-14312(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210822.1.S1_at	A	A1TS	POPTR_0013s00230	POPTR_0013s00230 (11)	scaffold_13:25891-26834(+) (11)	NA	O13775	"Probable glutamyl-tRNA synthetase, cytoplasmic"	AT5G26710.1	"Glutamyl/glutaminyl-tRNA synthetase, class Ic "	LOC_Os10g22380.1	"glutamyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr1g103230.1	"Glutamyl-tRNA synthetase, class Ic; Glutaminyl-tRNA synthetase; Glutathione S-transferase, C-terminal-like "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.210823.1.S1_at	A	A1TS	POPTR_0013s00270	POPTR_0013s00270 (10)	scaffold_13:47909-48743(-) (10)	NA	Q9SXQ6	Flap endonuclease 1a	AT5G26680.2	5'-3' exonuclease family protein 	LOC_Os05g46270.1	"FEN1A - Putative flap endonuclease protein, expressed"	Medtr1g103250.1	"Helix-hairpin-helix motif, class 2 "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0004518|nuclease activity	NA
PtpAffx.210824.1.S1_at	A	A1TS	POPTR_0013s00265	POPTR_0013s00265 (10)	scaffold_13:53730-53930(+) (11)	NA	Q8VYE4	Probable peptide/nitrate transporter At1g27040	AT1G27040.1	Major facilitator superfamily protein 	LOC_Os06g38294.1	"peptide transporter PTR2, putative, expressed"	Medtr1g103280.1	"TGF-beta receptor, type I/II extracellular region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210825.1.S1_at	A	A1TS	POPTR_0013s00265	POPTR_0013s00265 (11)	scaffold_13:54212-54394(+) (11)	NA	Q8VYE4	Probable peptide/nitrate transporter At1g27040	AT1G27040.1	Major facilitator superfamily protein 	LOC_Os06g38294.1	"peptide transporter PTR2, putative, expressed"	Medtr1g103280.1	"TGF-beta receptor, type I/II extracellular region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210826.1.S1_at	A	A1TS	POPTR_0013s00310	POPTR_0013s00310 (11)	scaffold_13:88673-88862(-) (11)	NA	O80536	Transcription factor PIF3	AT1G09530.2	phytochrome interacting factor 3 	LOC_Os01g18290.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g103000.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.210826.1.S1_x_at	A	A1TS	POPTR_0013s00310	POPTR_0013s00310 (11)	scaffold_13:88651-88862(-) (11)	NA	O80536	Transcription factor PIF3	AT1G09530.2	phytochrome interacting factor 3 	LOC_Os01g18290.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g103000.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.210827.1.S1_at	A	A1TS	POPTR_0013s00350	POPTR_0013s00350 (11)	scaffold_13:120131-120571(+) (11)	NA	Q9FJK3	Agamous-like MADS-box protein AGL80	AT5G48670.1	AGAMOUS-like 80 	LOC_Os01g18440.1	OsMADS89 - MADS-box family gene with M-gamma type-box	Medtr3g087250.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.210829.1.S1_at	A	A1TS	POPTR_0013s00430	POPTR_0013s00430 (11)	scaffold_13:176271-176836(+) (11)	NA	Q9FMF6	"Pentatricopeptide repeat-containing protein At5g64320, mitochondrial"	AT5G64320.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g58120.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g097270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210830.1.S1_at	A	A1TS	POPTR_0013s00510	POPTR_0013s00510 (11)	scaffold_13:218153-218546(-) (11)	NA	O65399	"Glucan endo-1,3-beta-glucosidase 1"	AT1G09460.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os03g61780.2	"glucan endo-1,3-beta-glucosidase-related, putative, expressed"	Medtr1g102900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210830.1.S1_s_at	A	A1TS	POPTR_0013s00510	POPTR_0013s00510 (11)	scaffold_13:217870-218445(-) (11)	NA	O65399	"Glucan endo-1,3-beta-glucosidase 1"	AT1G09460.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os03g61780.2	"glucan endo-1,3-beta-glucosidase-related, putative, expressed"	Medtr1g102900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210831.1.S1_at	A	A1MS	POPTR_0013s00520	POPTR_0013s00520 (9)	scaffold_13:224026-225615(-) (10)	NA	Q8TF76	Serine/threonine-protein kinase haspin	AT1G09450.1	Protein kinase superfamily protein 	LOC_Os07g44360.1	"serine/threonine-protein kinase Haspin, putative, expressed"	AC235094_20.1	Protein kinase-like AC235094.1 109355-115235 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210833.1.S1_at	A	A1TS	POPTR_0013s00540	POPTR_0013s00540 (11)	scaffold_13:254345-255618(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210835.1.S1_at	A	A1TS	POPTR_0013s00560	POPTR_0013s00560 (11)	scaffold_13:267090-267337(-) (11)	NA	Q76PD2	LIM domain and RING finger protein C1223.01	AT3G62240.1	RING/U-box superfamily protein 	LOC_Os05g19970.1	"ZOS5-06 - C2H2 zinc finger protein, expressed"	Medtr7g133640.1	"Zinc finger, RING-type; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.210836.1.S1_at	A	A1TS	POPTR_0013s00590	POPTR_0013s00590 (9)	scaffold_13:285352-285384(+) (9)	NA	O82491	FACT complex subunit SPT16	AT4G10710.1	global transcription factor C 	LOC_Os04g25550.1	"FACT complex subunit SPT16, putative, expressed"	Medtr3g086680.1	Peptidase M24; 	GO:0009987|cellular process	NA	NA
PtpAffx.210837.1.S1_at	A	A1TS	POPTR_0013s00600	POPTR_0013s00600 (11)	scaffold_13:287822-288207(-) (11)	NA	Q8H6B1	FACT complex subunit SPT16	AT4G10710.1	global transcription factor C 	LOC_Os04g25550.1	"FACT complex subunit SPT16, putative, expressed"	Medtr3g086680.1	Peptidase M24; 	GO:0009987|cellular process	NA	NA
PtpAffx.210837.1.S1_s_at	A	A1TS	POPTR_0013s00600	POPTR_0013s00600 (11)	scaffold_13:288152-288420(-) (11)	NA	Q8H6B1	FACT complex subunit SPT16	AT4G10710.1	global transcription factor C 	LOC_Os04g25550.1	"FACT complex subunit SPT16, putative, expressed"	Medtr3g086680.1	Peptidase M24; 	GO:0009987|cellular process	NA	NA
PtpAffx.210838.1.S1_at	A	A1TS	POPTR_0013s00630	POPTR_0013s00630 (11)	scaffold_13:300750-301282(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT3G16340.1	pleiotropic drug resistance 1 	LOC_Os01g24010.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr7g117190.1	AAA ATPase; 	NA	NA	GO:0016020|membrane
PtpAffx.210839.1.S1_at	A	A1TS	POPTR_0013s00640	POPTR_0013s00640 (11)	scaffold_13:311448-311902(+) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G02460.1	Pectin lyase-like superfamily protein 	LOC_Os05g20020.1	"polygalacturonase, putative, expressed"	Medtr1g106120.1	"Ribosome-binding factor A; Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.210840.1.S1_at	A	A1TS	POPTR_0013s00680	POPTR_0013s00680 (11)	scaffold_13:331272-331810(-) (11)	NA	Q9FXB9	"Pentatricopeptide repeat-containing protein At1g56690, mitochondrial"	AT1G56690.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g20190.1	"pentatricopeptide, putative, expressed"	Medtr7g080560.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210841.1.S1_at	A	A1TS	POPTR_0013s00750	POPTR_0013s00750 (11)	scaffold_13:389351-389878(+) (11)	NA	Q12873	Chromodomain-helicase-DNA-binding protein 3	AT1G08060.2	ATP-dependent helicase family protein 	LOC_Os06g01320.1	"chromo domain containing protein, expressed"	fpc265_22.1	"Helicase, C-terminal fpc265 101840-115910 E EGN_Mt090430 200"	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.210842.1.S1_at	A	A1TS	POPTR_0013s00780	POPTR_0013s00780 (11)	scaffold_13:403014-404031(+) (11)	NA	P53676	AP-3 complex subunit mu-1	AT1G56590.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os05g31780.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g034870.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.210843.1.S1_at	A	A1TS	POPTR_0013s00810	POPTR_0013s00810 (11)	scaffold_13:415039-415556(+) (11)	NA	Q9FXA9	Putative pentatricopeptide repeat-containing protein At1g56570	AT1G56570.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g36620.1	"pentatricopeptide, putative, expressed"	Medtr1g102670.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210844.1.S1_at	A	A1TS	POPTR_0013s00820	POPTR_0013s00820 (11)	scaffold_13:422977-423554(+) (11)	NA	P93005	Pentatricopeptide repeat-containing protein At2g33680	AT2G33680.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g27650.1	"pentatricopeptide, putative"	Medtr8g145930.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210846.1.S1_at	A	A1MS	POPTR_0013s00870	POPTR_0013s00870 (10)	scaffold_13:440746-441332(-) (10)	NA	Q5T7W7	Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2	AT1G09280.1	"CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). "	LOC_Os12g37630.1	"domain of unknown function family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210847.1.S1_at	A	A1TS	POPTR_0013s00890	POPTR_0013s00890 (11)	scaffold_13:453743-454296(+) (11)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210849.1.S1_at	A	A1MS	POPTR_0013s00940	POPTR_0013s00940 (11)	scaffold_13:489345-489707(+) (11)	NA	Q9FI80	Pentatricopeptide repeat-containing protein At5g48910	AT5G48910.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g51790.1	conserved hypothetical protein	Medtr3g069190.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210850.1.S1_at	A	A1TS	POPTR_0013s00950	POPTR_0013s00950 (11)	scaffold_13:491872-493707(+) (11)	NA	Q3E9D3	Probable pectinesterase 55	AT5G18990.1	Pectin lyase-like superfamily protein 	LOC_Os01g19440.1	"pectinesterase, putative"	AC146557_2.1	Pectinesterase AC146557.33 4034-7009 H EGN_Mt090430 200	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.210851.1.S1_at	A	A1MS	POPTR_0013s00960	POPTR_0013s00960 (10)	scaffold_13:502822-503446(+) (10)	NA	Q5EA50	Rab9 effector protein with kelch motifs	AT1G74150.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210853.1.S1_at	A	A1TS	POPTR_0013s00990	POPTR_0013s00990 (11)	scaffold_13:531299-531495(+) (11)	NA	Q6ZQ18	Protein EFR3 homolog B	AT5G26850.4	Uncharacterized protein 	LOC_Os03g19520.1	"cyclin-related protein, putative, expressed"	Medtr4g050000.1	"cyclin-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210854.1.S1_at	A	A1TS	POPTR_0013s01000	POPTR_0013s01000 (11)	scaffold_13:542610-544836(+) (11)	NA	Q9FP29	Homeobox protein knotted-1-like 1	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os01g19694.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.210855.1.S1_at	A	A1TS	POPTR_0013s01020	POPTR_0013s01020 (11)	scaffold_13:556044-556536(+) (11)	NA	Q9FXC7	Putative F-box protein At1g67623	AT1G74875.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67623.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g30300.1	"MYND finger family protein, expressed"	Medtr8g138790.1	"F-box protein At2g35280, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210856.1.S1_at	A	A1TS	POPTR_0013s01040	POPTR_0013s01040 (11)	scaffold_13:576351-576895(+) (11)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os09g04160.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210857.1.S1_at	A	A1TS	POPTR_0013s01060	POPTR_0013s01060 (11)	scaffold_13:582857-583492(-) (11)	NA	Q2W3F8	Peptide chain release factor 2	AT1G56350.1	Peptide chain release factor 2 	LOC_Os03g19300.1	"peptide chain release factor protein, putative, expressed"	Medtr7g090040.1	"Peptide chain release factor 2, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
PtpAffx.210858.1.S1_at	A	A1TS	POPTR_0013s01070	POPTR_0013s01070 (11)	scaffold_13:587204-587697(+) (11)	NA	Q2QNM3	RNA pseudourine synthase 1	AT1G56345.1	Pseudouridine synthase family protein 	LOC_Os12g37380.1	"RNA pseudouridine synthase, putative, expressed"	Medtr1g100510.1	"Pseudouridine synthase, Rlu; Peptidase S16, lon C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210859.1.S1_at	A	A1TS	POPTR_0013s01100	POPTR_0013s01100 (11)	scaffold_13:602094-602762(-) (11)	NA	O22267	Histidine kinase CKI1	AT2G47430.1	Signal transduction histidine kinase 	LOC_Os06g08450.1	"histidine kinase, putative"	Medtr1g106850.1	Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.210860.1.S1_at	A	A1TS	POPTR_0013s01140	POPTR_0013s01140 (11)	scaffold_13:621401-621609(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210861.1.S1_at	A	A1TS	POPTR_0013s01150	POPTR_0013s01150 (11)	scaffold_13:622695-622863(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210862.1.S1_at	A	A1TS	POPTR_0013s01170	POPTR_0013s01170 (11)	scaffold_13:632785-633347(-) (11)	NA	NA	NA	AT3G62630.1	Protein of unknown function (DUF1645) 	LOC_Os03g19090.1	expressed protein	Medtr1g100380.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210863.1.S1_at	A	A1TS	POPTR_0013s01190	POPTR_0013s01190 (11)	scaffold_13:648959-649195(-) (11)	NA	NA	NA	AT3G05725.1	Protein of unknown function (DUF3511) 	NA	NA	Medtr1g107520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210864.1.S1_at	A	A1TS	POPTR_0013s01220	POPTR_0013s01220 (11)	scaffold_13:672628-672668(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.210864.1.S1_s_at	A	A1TS	POPTR_0013s01220	POPTR_0013s01220 (11)	scaffold_13:672359-672626(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.210864.1.S1_x_at	A	A1TS	POPTR_0013s01220	POPTR_0013s01220 (11)	scaffold_13:672436-673008(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.210865.1.S1_at	A	A1TS	POPTR_0013s01240	POPTR_0013s01240 (9)	scaffold_13:681876-683845(-) (10)	NA	Q9SUJ1	Syntaxin-43	AT5G26980.2	syntaxin of plants 41 	LOC_Os06g02570.1	"syntaxin, putative, expressed"	Medtr1g100300.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.210866.1.S1_at	A	A1TS	POPTR_0013s01260	POPTR_0013s01260 (11)	scaffold_13:692714-693906(-) (11)	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210867.1.S1_at	A	A1TS	POPTR_0013s01280	POPTR_0013s01280 (11)	scaffold_13:720799-721531(+) (11)	NA	O81635	Kinesin-4	AT5G27000.1	kinesin 4 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.210868.1.S1_at	A	A1TS	POPTR_0013s01310	POPTR_0013s01310 (11)	scaffold_13:731100-731177(-) (11)	NA	Q9LZM4	Wall-associated receptor kinase-like 20	AT5G02070.1	Protein kinase family protein 	LOC_Os05g25390.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr7g138230.1	"Putative wall-associated receptor kinase-like 20 precursor, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210868.1.S1_s_at	A	A1TS	POPTR_0013s01310	POPTR_0013s01310 (11)	scaffold_13:731217-731688(-) (11)	NA	Q9LZM4	Wall-associated receptor kinase-like 20	AT5G02070.1	Protein kinase family protein 	LOC_Os05g25390.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr7g138230.1	"Putative wall-associated receptor kinase-like 20 precursor, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210869.1.S1_at	A	A1TS	POPTR_0013s01320	POPTR_0013s01320 (11)	scaffold_13:735171-737090(-) (11)	NA	Q84J78	"Single-stranded DNA-binding protein, mitochondrial"	AT4G11060.1	mitochondrially targeted single-stranded DNA binding protein 	LOC_Os05g43440.2	"single-stranded DNA-binding protein, putative, expressed"	Medtr1g100250.1	Single-stranded DNA binding 	NA	GO:0003697|single-stranded DNA binding	NA
PtpAffx.21087.1.S1_at	A	A1TS	POPTR_0005s06400	POPTR_0005s06400 (11)	scaffold_5:4265356-4266948(+) (11)	NA	Q9FY84	Probable gamma-secretase subunit PEN-2	AT5G09310.1	"CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast hits to 168 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). "	LOC_Os01g72960.1	expressed protein	Medtr3g143320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210870.1.S1_at	A	A1TS	POPTR_0013s01340	POPTR_0013s01340 (11)	scaffold_13:748995-749298(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210871.1.S1_at	A	A1TS	POPTR_0013s01350	POPTR_0013s01350 (11)	scaffold_13:750202-752453(-) (11)	NA	Q5RDD2	Pre-mRNA-splicing factor 38A	AT2G40650.1	PRP38 family protein 	LOC_Os09g01630.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr1g100230.1	PRP38 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210872.1.S1_at	A	A1TS	POPTR_0013s01370	POPTR_0013s01370 (11)	scaffold_13:787859-788437(+) (11)	NA	Q0WRB2	Probable protein phosphatase 2C 73	AT5G27930.2	Protein phosphatase 2C family protein 	LOC_Os05g29030.2	"protein phosphatase 2C, putative, expressed"	Medtr7g138290.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210872.1.S1_s_at	A	A1TS	POPTR_0013s01370	POPTR_0013s01370 (11)	scaffold_13:787747-788326(+) (11)	NA	Q0WRB2	Probable protein phosphatase 2C 73	AT5G27930.2	Protein phosphatase 2C family protein 	LOC_Os05g29030.2	"protein phosphatase 2C, putative, expressed"	Medtr7g138290.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210873.1.S1_at	A	A1TS	POPTR_0013s01380	POPTR_0013s01380 (11)	scaffold_13:790083-791002(-) (11)	NA	Q9LRZ5	Phospholipase D p1	AT3G16785.1	phospholipase D P1 	LOC_Os05g29050.2	"phospholipase D p1, putative, expressed"	Medtr1g100110.1	Phospholipase D/Transphosphatidylase; Pleckstrin homology-type 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.210875.1.S1_at	A	A1TS	POPTR_0013s01410	POPTR_0013s01410 (11)	scaffold_13:810976-811667(+) (11)	NA	O80494	F-box protein PP2-B15	AT1G09155.1	phloem protein 2-B15 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr7g138350.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210877.1.S1_at	A	A1TS	POPTR_0013s01450	POPTR_0013s01450 (11)	scaffold_13:831574-831959(+) (11)	NA	NA	NA	AT1G56230.1	Protein of unknown function (DUF1399) 	LOC_Os01g24480.1	"DUF1399 containing protein, putative, expressed"	Medtr1g100030.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210878.1.S1_at	A	A1TS	POPTR_0013s01460	POPTR_0013s01460 (11)	scaffold_13:839417-840410(+) (11)	NA	Q8RWU5	F-box/LRR-repeat protein 3	AT5G27920.1	F-box family protein 	LOC_Os12g36670.1	"F-box/LRR-repeat protein 3, putative, expressed"	Medtr7g138390.1	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.210879.1.S1_at	A	A1MS	POPTR_0013s01480	POPTR_0013s01480 (9)	scaffold_13:846694-847037(+) (9)	NA	NA	NA	AT4G02330.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g20980.1	"pectinesterase, putative, expressed"	Medtr1g108220.1	Pectinesterase; Plant invertase/pectin methylesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.210880.1.S1_at	A	A1TS	POPTR_0013s01500	POPTR_0013s01500 (11)	scaffold_13:849517-850047(+) (11)	NA	Q8GX86	Probable pectinesterase/pectinesterase inhibitor 21	AT3G05610.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os03g18860.1	"pectinesterase, putative, expressed"	Medtr7g138410.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.210881.1.S1_at	A	A1TS	POPTR_0013s01510	POPTR_0013s01510 (11)	scaffold_13:858561-859551(+) (11)	POPTR_0005s02320 (6)	P34913	Epoxide hydrolase 2	AT3G05600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g19150.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138740.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210883.1.S1_at	A	A1TS	POPTR_0013s01600	POPTR_0013s01600 (11)	scaffold_13:906893-908397(+) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT4G15920.1	Nodulin MtN3 family protein 	LOC_Os03g22200.1	"nodulin MtN3 family protein, putative, expressed"	Medtr5g099910.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210884.1.S1_at	A	A1TS	POPTR_0013s01660	POPTR_0013s01660 (11)	scaffold_13:940344-940939(-) (11)	NA	Q9C992	3-ketoacyl-CoA synthase 7	AT1G71160.1	3-ketoacyl-CoA synthase 7 	LOC_Os03g12030.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr2g007100.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.210885.1.S1_at	A	A1TS	POPTR_0013s01670	POPTR_0013s01670 (11)	scaffold_13:948190-949052(-) (11)	NA	Q8RXT9	GDSL esterase/lipase At1g28590	AT1G28590.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os11g31940.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019090.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.210886.1.S1_at	A	A1TS	POPTR_0013s01700	POPTR_0013s01700 (9)	scaffold_13:961502-962765(+) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT1G09140.1	SERINE-ARGININE PROTEIN 30 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr1g099910.4	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.210886.1.S1_s_at	A	A1TS	POPTR_0013s01700	POPTR_0013s01700 (11)	scaffold_13:960991-961657(+) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT1G09140.1	SERINE-ARGININE PROTEIN 30 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr1g099910.4	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.210887.1.S1_at	A	A1TS	POPTR_0013s01740	POPTR_0013s01740 (11)	scaffold_13:991266-991793(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210888.1.S1_s_at	A	A2TS	POPTR_0013s01740	POPTR_0845s00200 (11)//POPTR_0013s01740 (11)	scaffold_13:993077-993503(-) (11)//scaffold_845:7928-8354(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210889.1.S1_at	A	A1TS	POPTR_0013s01780	POPTR_0013s01780 (11)	scaffold_13:1015126-1017257(-) (11)	NA	NA	NA	AT5G27710.1	unknown protein; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os07g47570.1	expressed protein	Medtr7g138470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210890.1.S1_at	A	A1TS	POPTR_0013s01850	POPTR_0013s01850 (11)	scaffold_13:1072343-1072771(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210891.1.S1_at	A	A1TS	POPTR_0013s01860	POPTR_0013s01860 (11)	scaffold_13:1078569-1079030(+) (11)	NA	Q9MA60	Formin-like protein 11	AT3G05470.1	Actin-binding FH2 (formin homology 2) family protein 	LOC_Os08g33430.1	"formin, putative, expressed"	Medtr1g099780.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210892.1.S1_at	A	A1MS	POPTR_0013s01880	POPTR_0013s01880 (11)	scaffold_13:1090121-1090665(-) (11)	NA	Q9FJK3	Agamous-like MADS-box protein AGL80	AT5G48670.1	AGAMOUS-like 80 	LOC_Os01g18440.1	OsMADS89 - MADS-box family gene with M-gamma type-box	Medtr3g087250.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.210893.1.S1_at	A	A1TS	POPTR_0013s01900	POPTR_0013s01900 (11)	scaffold_13:1100045-1101286(+) (11)	NA	Q3E6S8	Putative protease Do-like 14	AT5G27660.1	Trypsin family protein with PDZ domain 	LOC_Os11g14170.1	"OsDegp12 - Putative Deg protease homologue, expressed"	Medtr7g138970.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidase S1C, HrtA/DegP2/Q/S "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.210894.1.S1_at	A	A1MS	POPTR_0013s01910	POPTR_0013s01910 (9)	scaffold_13:1103434-1103643(-) (9)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210895.1.S1_at	A	A1TS	POPTR_0013s01920	POPTR_0013s01920 (11)	scaffold_13:1108657-1108857(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210896.1.S1_at	A	A1TS	POPTR_0013s01940	POPTR_0013s01940 (11)	scaffold_13:1115933-1116466(-) (11)	NA	NA	NA	AT5G27650.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g05660.1	"PWWP domain containing protein, expressed"	Medtr7g138980.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210897.1.S1_s_at	A	A2TS	POPTR_0001s13240	POPTR_0001s13240 (9)//POPTR_0013s01960 (9)	scaffold_1:10340397-10340429(-) (9)//scaffold_13:1130748-1130780(+) (9)//scaffold_16:7624542-7624574(-) (9)	NA	Q93ZM9	Protein TIFY 9	AT5G13220.1	jasmonate-zim-domain protein 10 	LOC_Os04g32480.1	"zinc-finger protein, putative, expressed"	Medtr5g013680.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210897.1.S1_x_at	A	A1TS	POPTR_0013s01960	POPTR_0013s01960 (11)	scaffold_13:1130306-1130804(+) (11)//scaffold_16:7624518-7625016(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210898.1.S1_at	A	A1MS	POPTR_0013s01980	POPTR_0013s01980 (9)	scaffold_13:1146075-1146841(-) (9)	NA	NA	NA	AT3G05410.2	Photosystem II reaction center PsbP family protein 	LOC_Os01g70820.1	"lumenal PsbP, putative, expressed"	Medtr1g099660.2	Photosystem II oxygen evolving complex protein PsbP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210899.1.S1_at	A	A1TS	POPTR_0013s02000	POPTR_0013s02000 (11)	scaffold_13:1161881-1162381(-) (11)	NA	NA	NA	AT1G09040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09050.1); Has 614 Blast hits to 567 proteins in 104 species: Archae - 2; Bacteria - 12; Metazoa - 344; Fungi - 31; Plants - 81; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). 	LOC_Os07g38080.2	"homeodomain-like, putative, expressed"	Medtr7g139050.1	"Homeodomain-like, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2109.1.S1_at	A	A1TS	POPTR_0013s12890	POPTR_0013s12890 (11)	scaffold_13:13509214-13511375(-) (11)	NA	O04421	Signal recognition particle 14 kDa protein	AT2G43640.2	"Signal recognition particle, SRP9/SRP14 subunit "	LOC_Os04g53220.1	"signal recognition particle 14 kDa protein, putative, expressed"	AC225507_5.1	"Signal recognition particle, 14 kDa protein AC225507.11 23841-19422 E EGN_Mt090430 200"	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0030942|endoplasmic reticulum signal peptide binding||GO:0008312|7S RNA binding	"GO:0005786|""signal recognition particle, endoplasmic reticulum targeting"""
PtpAffx.210900.1.S1_at	A	A1TS	POPTR_0013s02010	POPTR_0013s02010 (11)	scaffold_13:1173708-1174202(+) (11)	NA	NA	NA	AT3G05390.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os06g27980.1	"methyltransferase domain containing protein, expressed"	Medtr2g034180.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.210901.1.S1_at	A	A1TS	POPTR_0013s02020	POPTR_0013s02020 (11)	scaffold_13:1180292-1180531(+) (11)	NA	O04027	Nuclear transcription factor Y subunit B-4	AT1G09030.1	"nuclear factor Y, subunit B4 "	LOC_Os01g70890.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr1g099630.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.210902.1.S1_at	A	A1TS	POPTR_0013s02030	POPTR_0013s02030 (11)	scaffold_13:1188618-1188844(+) (11)	NA	O04027	Nuclear transcription factor Y subunit B-4	AT1G09030.1	"nuclear factor Y, subunit B4 "	LOC_Os01g70890.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr1g099630.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.210903.1.S1_at	A	A1TS	POPTR_0013s02070	POPTR_0013s02070 (11)	scaffold_13:1215169-1216007(+) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.2	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210904.1.S1_at	A	A1TS	POPTR_0013s02080	POPTR_0013s02080 (10)	scaffold_13:1219801-1220386(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT3G57710.1	Protein kinase superfamily protein 	LOC_Os04g51030.1	"wall-associated kinase 1, putative, expressed"	Medtr7g089090.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210905.1.S1_at	A	A1TS	POPTR_0013s02090	POPTR_0013s02090 (11)	scaffold_13:1230665-1232986(+) (11)	NA	NA	NA	AT3G62900.1	CW-type Zinc Finger 	LOC_Os03g22580.2	"CW-type Zinc Finger, putative, expressed"	Medtr7g130060.1	hypothetical protein 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.210906.1.S1_at	A	A1TS	POPTR_0013s02170	POPTR_0013s02170 (11)	scaffold_13:1301028-1301707(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os07g03000.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr6g038640.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210907.1.S1_at	A	A1TS	POPTR_0013s02180	POPTR_0013s02180 (11)	scaffold_13:1305322-1306720(-) (11)	NA	NA	NA	AT3G05345.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os05g33010.2	"heat shock protein DnaJ, putative, expressed"	Medtr7g139310.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.210908.1.S1_at	A	A1TS	POPTR_0013s02200	POPTR_0013s02200 (11)	scaffold_13:1309575-1310074(-) (11)	NA	Q9MA85	Pentatricopeptide repeat-containing protein At3g05340	AT3G05340.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g05490.1	"pentatricopeptide, putative, expressed"	Medtr7g139320.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210909.1.S1_s_at	A	A1TS	POPTR_0013s02230	POPTR_0013s02230 (9)	scaffold_13:1333347-1335654(-) (10)	NA	Q09795	Uncharacterized peptidase C22G7.01c	AT3G05350.1	Metallopeptidase M24 family protein 	LOC_Os07g10540.2	"peptidase, M24 family protein, putative, expressed"	Medtr7g139250.1	"Creatinase; Peptidase M24; Peptidase aspartic, active site "	GO:0009987|cellular process	GO:0016787|hydrolase activity	NA
PtpAffx.210910.1.S1_at	A	A1TS	POPTR_0013s02250	POPTR_0013s02250 (9)	scaffold_13:1341684-1344568(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g139200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210911.1.S1_at	A	A1TS	POPTR_0013s02270	POPTR_0013s02270 (11)	scaffold_13:1352131-1353205(-) (11)	NA	Q99KU0	Transmembrane protein 49	AT4G14950.1	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210911.1.S1_s_at	A	A1TS	POPTR_0013s02270	POPTR_0013s02270 (11)	scaffold_13:1352052-1352281(-) (11)	NA	Q99KU0	Transmembrane protein 49	AT4G14950.1	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210912.1.S1_at	A	A1TS	POPTR_0013s02290	POPTR_0013s02290 (11)	scaffold_13:1361116-1361637(+) (11)	NA	Q99JR6	Nicotinamide mononucleotide adenylyltransferase 3	AT5G55810.1	nicotinate/nicotinamide mononucleotide adenyltransferase 	LOC_Os09g17870.1	"cytidylyltransferase domain containing protein, expressed"	Medtr5g103570.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.210913.1.S1_at	A	A1TS	POPTR_0013s02320	POPTR_0013s02320 (11)	scaffold_13:1378735-1379577(+) (11)	NA	O60673	DNA polymerase zeta catalytic subunit	AT1G67500.2	recovery protein 3 	LOC_Os11g08330.1	"POLD1 - Putative DNA polymerase delta catalytic subunit, expressed"	Medtr7g139140.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.210914.1.S1_at	A	A1TS	POPTR_0013s02320	POPTR_0013s02320 (10)	scaffold_13:1390316-1390715(+) (10)	NA	O60673	DNA polymerase zeta catalytic subunit	AT1G67500.2	recovery protein 3 	LOC_Os11g08330.1	"POLD1 - Putative DNA polymerase delta catalytic subunit, expressed"	Medtr7g139140.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.210915.1.S1_at	A	A1TS	POPTR_0013s02330	POPTR_0013s02330 (11)	scaffold_13:1392216-1394397(+) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT1G55040.1	zinc finger (Ran-binding) family protein 	LOC_Os07g22024.1	"zinc finger family protein, putative, expressed"	Medtr7g139130.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.210916.1.S1_at	A	A1TS	POPTR_0013s02360	POPTR_0013s02360 (10)	scaffold_13:1410424-1410876(-) (10)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT1G09000.1	NPK1-related protein kinase 1 	LOC_Os09g21510.1	"STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr7g139260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210917.1.S1_at	A	A1TS	POPTR_0013s02450	POPTR_0013s02450 (11)	scaffold_13:1457362-1457949(-) (11)	NA	NA	NA	AT1G54920.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os11g05100.1	"nucleolar GTPase, putative, expressed"	Medtr1g099450.1	"nucleolar GTPase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210918.1.S1_at	A	A1TS	POPTR_0013s02460	POPTR_0013s02460 (11)	scaffold_13:1464383-1465149(-) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT1G54860.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210920.1.S1_at	A	A1MS	POPTR_0013s02530	POPTR_0013s02530 (11)	scaffold_13:1503516-1504154(-) (11)	NA	Q5KS50	Coleoptile phototropism protein 1	AT5G10250.1	Phototropic-responsive NPH3 family protein 	LOC_Os02g35970.1	"BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr1g099310.1	BTB/POZ; NPH3; ; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.210921.1.S1_at	A	A1TS	POPTR_0013s02550	POPTR_0013s02550 (11)	scaffold_13:1510030-1510380(-) (11)	NA	NA	NA	AT1G54850.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr1g099290.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210922.1.S1_at	A	A1TS	POPTR_0013s02560	POPTR_0013s02560 (9)	scaffold_13:1516040-1516785(+) (10)	NA	NA	NA	AT1G54840.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr1g099290.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210923.1.S1_at	A	A1TS	POPTR_0013s02570	POPTR_0013s02570 (11)	scaffold_13:1524351-1525639(+) (11)	NA	NA	NA	AT1G54840.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr1g099290.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210924.1.S1_at	A	A1TS	POPTR_0013s02600	POPTR_0013s02600 (11)	scaffold_13:1536962-1537721(-) (11)	NA	NA	NA	AT2G24960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g02500.1	conserved hypothetical protein	Medtr5g022470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210925.1.S1_at	A	A1TS	POPTR_0013s02610	POPTR_0013s02610 (11)	scaffold_13:1541593-1542681(-) (11)	NA	NA	NA	AT2G24960.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). 	LOC_Os09g03570.1	"retrotransposon, putative, centromere-specific"	Medtr5g022470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210926.1.S1_at	A	A1TS	POPTR_0013s02620	POPTR_0013s02620 (11)	scaffold_13:1549111-1549572(-) (11)	NA	Q6B4J5	Spore coat assembly protein exsA	AT5G19090.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.210927.1.S1_at	A	A1TS	POPTR_0013s02640	POPTR_0013s02640 (11)	scaffold_13:1568620-1568937(-) (11)	NA	NA	NA	AT1G22500.1	RING/U-box superfamily protein 	NA	NA	Medtr3g150140.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210928.1.S1_at	A	A1TS	POPTR_0013s02650	POPTR_0013s02650 (11)	scaffold_13:1573463-1575844(+) (11)	NA	Q5I0K7	UDP-N-acetylglucosamine transferase subunit ALG13 homolog	AT4G16710.2	glycosyltransferase family protein 28 	LOC_Os02g26814.1	"UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed"	Medtr3g142970.1	"Glycosyltransferase 28, C-terminal "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0030246|carbohydrate binding||GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.210929.1.S1_s_at	A	A1MS	POPTR_0013s02720	POPTR_0013s02720 (11)	scaffold_13:1641653-1641961(+) (11)	NA	Q61768	Kinesin-1 heavy chain	AT3G63480.2	ATP binding microtubule motor family protein 	LOC_Os08g02380.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210930.1.S1_at	A	A1TS	POPTR_0013s02730	POPTR_0013s02730 (11)	scaffold_13:1646845-1647526(+) (11)	NA	Q3ECP6	GDSL esterase/lipase At1g54790	AT1G54790.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os05g33270.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g139630.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.210931.1.S1_at	A	A1MS	POPTR_0013s02760	POPTR_0013s02760 (9)	scaffold_13:1663087-1664025(+) (10)	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr1g099040.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.210931.1.S1_s_at	A	A1TS	POPTR_0013s02760	POPTR_0013s02760 (11)	scaffold_13:1663359-1664230(+) (11)	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr1g099040.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.210932.1.S1_s_at	A	A1TS	POPTR_0013s02810	POPTR_0013s02810 (11)	scaffold_13:1696824-1697325(-) (11)	NA	NA	NA	AT1G54740.1	Protein of unknown function (DUF3049) 	NA	NA	Medtr7g139750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210933.1.S1_at	A	A1TS	POPTR_0013s02840	POPTR_0013s02840 (10)	scaffold_13:1720421-1720703(-) (11)	NA	P60838	Probable disease resistance protein At1g12280	AT1G12280.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_3.1	NB-ARC; AAA ATPase AC225526.7 19758-13755 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210934.1.S1_at	A	A1TS	POPTR_0013s02850	POPTR_0013s02850 (11)	scaffold_13:1724492-1725627(-) (11)	NA	Q3ECP7	Sugar transporter ERD6-like 5	AT1G54730.2	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr7g139760.1	Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.210935.1.S1_at	A	A1TS	POPTR_0013s02870	POPTR_0013s02870 (11)	scaffold_13:1734197-1735529(-) (11)	NA	O04036	Sugar transporter ERD6	AT1G08930.2	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr7g139770.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.210936.1.S1_at	A	A1TS	POPTR_0013s02910	POPTR_0013s02910 (11)	scaffold_13:1756715-1757231(-) (11)	NA	P93050	Probable LRR receptor-like serine/threonine-protein kinase RKF3	AT2G48010.1	receptor-like kinase in in flowers 3 	LOC_Os01g28730.1	"protein kinase domain containing protein, expressed"	Medtr2g006980.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210937.1.S1_at	A	A1TS	POPTR_0013s02930	POPTR_0013s02930 (11)	scaffold_13:1769458-1770753(+) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT3G05140.1	ROP binding protein kinases 2 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr1g098870.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210938.1.S1_at	A	A1TS	POPTR_0013s02940	POPTR_0013s02940 (11)	scaffold_13:1780129-1780354(+) (11)	NA	Q8CCN5	Breast carcinoma-amplified sequence 3 homolog	AT1G54710.1	homolog of yeast autophagy 18 (ATG18) H 	LOC_Os05g33610.2	expressed protein	Medtr1g098850.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210938.1.S1_s_at	A	A1TS	POPTR_0013s02940	POPTR_0013s02940 (11)	scaffold_13:1780352-1780580(+) (11)	NA	Q8CCN5	Breast carcinoma-amplified sequence 3 homolog	AT1G54710.1	homolog of yeast autophagy 18 (ATG18) H 	LOC_Os05g33610.2	expressed protein	Medtr1g098850.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210938.1.S1_x_at	A	A1TS	POPTR_0013s02940	POPTR_0013s02940 (11)	scaffold_13:1780044-1780354(+) (11)	NA	Q8CCN5	Breast carcinoma-amplified sequence 3 homolog	AT1G54710.1	homolog of yeast autophagy 18 (ATG18) H 	LOC_Os05g33610.2	expressed protein	Medtr1g098850.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210939.1.S1_at	A	A1TS	POPTR_0013s02960	POPTR_0013s02960 (11)	scaffold_13:1795295-1796227(-) (11)	NA	NA	NA	AT5G18860.1	inosine-uridine preferring nucleoside hydrolase family protein 	LOC_Os05g33644.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr2g025820.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210940.1.S1_at	A	A1TS	POPTR_0013s02980	POPTR_0013s02980 (11)	scaffold_13:1803487-1803641(-) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G27320.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g098780.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.210941.1.S1_at	A	A1TS	POPTR_0013s03010	POPTR_0013s03010 (11)	scaffold_13:1823663-1825520(-) (11)	NA	Q5XQC7	Protein BONZAI 3	AT1G08860.1	Calcium-dependent phospholipid-binding Copine family protein 	LOC_Os05g30970.1	"copine, putative, expressed"	Medtr7g139920.1	"C2; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210942.1.S1_at	A	A1TS	POPTR_0013s03020	POPTR_0013s03020 (11)	scaffold_13:1837163-1837556(-) (11)	NA	P37707	B2 protein	AT2G32910.1	DCD (Development and Cell Death) domain protein 	LOC_Os02g51140.1	"N-rich protein, putative, expressed"	Medtr3g151330.1	Kelch related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210943.1.S1_at	A	A1TS	POPTR_0013s03030	POPTR_0013s03030 (11)	scaffold_13:1843092-1844610(-) (11)	NA	NA	NA	AT1G08845.2	Ribosomal L18p/L5e family protein 	LOC_Os10g41050.1	"ribosomal L18p/L5e family protein, expressed"	Medtr4g033440.1	Ribosomal protein L18P/L5E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.210944.1.S1_s_at	A	A3TS	POPTR_0013s03090	POPTR_0013s03090 (11)//POPTR_0986s00200 (11)//POPTR_0013s03110 (11)	scaffold_13:1885359-1885938(+) (11)//scaffold_13:1895115-1895694(+) (11)//scaffold_986:2855-3434(+) (11)	NA	Q41001	Blue copper protein	AT2G32300.1	uclacyanin 1 	LOC_Os07g07170.1	"plastocyanin-like domain containing protein, putative"	Medtr7g102930.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.210945.1.S1_s_at	A	A1TS	POPTR_0013s03100	POPTR_0013s03100 (11)	scaffold_13:1888376-1888632(-) (11)	NA	C0LGD6	Probable LRR receptor-like serine/threonine-protein kinase At1g05700	AT1G05700.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44990.1	"light repressible receptor protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.210948.1.S1_s_at	A	A3TS	POPTR_0013s03100	POPTR_0013s03100 (11)//POPTR_1333s00200 (11)//POPTR_0013s03115 (11)	scaffold_13:1888641-1888837(-) (11)//scaffold_13:1898360-1898558(-) (11)//scaffold_1333:5365-5561(+) (11)	NA	C0LGD6	Probable LRR receptor-like serine/threonine-protein kinase At1g05700	AT1G05700.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44990.1	"light repressible receptor protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.210948.1.S1_x_at	A	A1TS	POPTR_0013s03115	POPTR_0013s03115 (11)	scaffold_13:1888841-1898578(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210949.1.S1_s_at	A	A3TS	POPTR_0013s03100	POPTR_0013s03100 (11)//POPTR_0013s03120 (11)//POPTR_1333s00200 (11)	scaffold_13:1889417-1889576(-) (11)//scaffold_13:1900007-1900166(-) (11)//scaffold_1333:4622-4781(+) (11)	NA	C0LGD6	Probable LRR receptor-like serine/threonine-protein kinase At1g05700	AT1G05700.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44990.1	"light repressible receptor protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.210950.1.S1_at	A	A1TS	POPTR_0013s03140	POPTR_0013s03140 (11)	scaffold_13:1915113-1915577(+) (11)	NA	B3TP03	Low affinity cationic amino acid transporter 2	AT4G21120.1	amino acid transporter 1 	LOC_Os12g41890.1	"amino acid permease family protein, putative"	Medtr4g137890.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.210951.1.S1_at	A	A1TS	POPTR_0013s03170	POPTR_0013s03170 (11)	scaffold_13:1937124-1937388(+) (11)	NA	NA	NA	AT3G05010.1	"Protein of unknown function, transmembrane-40 "	LOC_Os03g54920.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210952.1.S1_at	A	A1TS	POPTR_0013s03190	POPTR_0013s03190 (11)	scaffold_13:1952883-1954531(+) (11)	NA	Q8VZ95	Vesicle-associated protein 1-1	AT3G60600.1	vesicle associated protein 	LOC_Os04g45190.1	"MSP domain containing protein, expressed"	Medtr8g139690.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.210953.1.S1_at	A	A1TS	POPTR_0013s03210	POPTR_0013s03210 (11)	scaffold_13:1958247-1958706(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210954.1.S1_at	A	A1TS	POPTR_0013s03220	POPTR_0013s03220 (11)	scaffold_13:1961170-1961545(-) (11)	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr8g139670.1	Sodium/hydrogen exchanger subfamily 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.210954.1.S1_x_at	A	A1TS	POPTR_0013s03220	POPTR_0013s03220 (11)	scaffold_13:1961170-1961697(-) (11)	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr8g139670.1	Sodium/hydrogen exchanger subfamily 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.210955.1.S1_at	A	A1TS	POPTR_0013s03240	POPTR_0013s03240 (10)	scaffold_13:1980470-1981328(-) (10)	NA	Q54PQ8	Exportin-5	AT3G05040.1	ARM repeat superfamily protein 	LOC_Os01g26160.1	"exportin 1, putative, expressed"	Medtr7g140100.1	Exportin-1/Importin-beta-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210956.1.S1_at	A	A1TS	POPTR_0013s03240	POPTR_0013s03240 (11)	scaffold_13:1983906-1984416(-) (11)	NA	Q54PQ8	Exportin-5	AT3G05040.1	ARM repeat superfamily protein 	LOC_Os01g26160.1	"exportin 1, putative, expressed"	Medtr7g140100.1	Exportin-1/Importin-beta-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210957.1.S1_at	A	A1TS	POPTR_0013s03240	POPTR_0013s03240 (10)	scaffold_13:1984941-1985716(-) (11)	NA	Q54PQ8	Exportin-5	AT3G05040.1	ARM repeat superfamily protein 	LOC_Os01g26160.1	"exportin 1, putative, expressed"	Medtr7g140100.1	Exportin-1/Importin-beta-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210958.1.S1_at	A	A1TS	POPTR_0013s03270	POPTR_0013s03270 (11)	scaffold_13:2011168-2013140(-) (11)	NA	NA	NA	AT5G41070.1	dsRNA-binding protein 5 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.210959.1.S1_x_at	A	A2TS	POPTR_0013s03360	POPTR_0013s03360 (11)//POPTR_0030s00200 (10)	scaffold_13:2060151-2062657(-) (11)//scaffold_30:7710-10222(-) (10)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210960.1.S1_at	A	A1TS	POPTR_0013s03340	POPTR_0013s03340 (11)	scaffold_13:2047465-2047754(-) (11)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210963.1.S1_at	A	A1TS	POPTR_0030s00210	POPTR_0030s00210 (11)	scaffold_30:22003-24188(-) (11)	NA	Q5F3K4	WD repeat-containing protein 48	AT3G05090.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g06810.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g140230.1	WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210964.1.S1_at	A	A1TS	POPTR_0030s00220	POPTR_0030s00220 (11)	scaffold_30:43450-43916(+) (11)	NA	Q9BVG8	Kinesin-like protein KIFC3	AT5G27950.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g15540.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g139300.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.210965.1.S1_at	A	A1TS	POPTR_0030s00230	POPTR_0030s00230 (11)	scaffold_30:44586-44719(-) (11)	NA	NA	NA	AT3G05100.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g47150.2	expressed protein	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.210966.1.S1_at	A	A1TS	POPTR_0030s00280	POPTR_0030s00280 (11)	scaffold_30:73803-74220(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210967.1.S1_at	A	A1TS	POPTR_0030s00300	POPTR_0030s00300 (11)	scaffold_30:79455-79630(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210968.1.S1_at	A	A1TS	POPTR_0030s00310	POPTR_0030s00310 (11)	scaffold_30:96237-96756(-) (11)	NA	Q01745	Galactose oxidase	AT3G57620.1	glyoxal oxidase-related protein 	LOC_Os03g15320.1	"glyoxal oxidase-related, putative, expressed"	Medtr7g140410.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210969.1.S1_at	A	A1TS	POPTR_0030s00370	POPTR_0030s00370 (11)	scaffold_30:135486-136139(+) (11)	NA	NA	NA	AT5G28020.5	cysteine synthase D2 	NA	NA	Medtr1g096600.2	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21097.1.S1_at	A	A1TS	POPTR_0009s04820	POPTR_0009s04820 (11)	scaffold_9:5064637-5065159(-) (11)	NA	NA	NA	AT3G47070.1	"LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr5g078450.1	"thylakoid soluble phosphoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210970.1.S1_at	A	A1TS	POPTR_0030s00380	POPTR_0030s00380 (11)	scaffold_30:139206-140865(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210971.1.S1_at	A	A1TS	POPTR_0030s00400	POPTR_0030s00400 (11)	scaffold_30:166563-166966(+) (11)	NA	Q9FQ04	5'-3' exoribonuclease 4	AT1G54490.1	exoribonuclease 4 	LOC_Os03g58060.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr7g140440.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.210972.1.S1_at	A	A1TS	POPTR_0030s00480	POPTR_0030s00480 (10)	scaffold_30:208887-209283(+) (10)	NA	NA	NA	AT1G54520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). 	LOC_Os03g48920.1	"DUF1517 domain containing protein, putative, expressed"	Medtr7g140520.1	Protein of unknown function DUF1517 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210973.1.S1_at	A	A1TS	POPTR_0030s00490	POPTR_0030s00490 (11)	scaffold_30:214751-215354(-) (11)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210974.1.S1_at	A	A1TS	POPTR_0030s00500	POPTR_0030s00500 (11)	scaffold_30:237934-238086(+) (11)	NA	NA	NA	AT3G04860.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr7g140620.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210974.1.S1_x_at	A	A1TS	POPTR_0030s00500	POPTR_0030s00500 (11)	scaffold_30:237512-238086(+) (11)	NA	NA	NA	AT3G04860.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr7g140620.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210975.1.S1_at	A	A1TS	POPTR_0030s00510	POPTR_0030s00510 (11)	scaffold_30:240230-243357(-) (11)	NA	NA	NA	AT3G04890.1	Uncharacterized conserved protein (DUF2358) 	LOC_Os07g10495.1	expressed protein	Medtr1g096340.2	"SOUL3-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210975.1.S1_x_at	A	A1TS	POPTR_0030s00510	POPTR_0030s00510 (11)	scaffold_30:239978-243391(-) (11)	NA	NA	NA	AT3G04890.1	Uncharacterized conserved protein (DUF2358) 	LOC_Os07g10495.1	expressed protein	Medtr1g096340.2	"SOUL3-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210976.1.S1_at	A	A1TS	POPTR_0245s00200	POPTR_0245s00200 (11)	scaffold_245:25300-25587(+) (11)	NA	Q9FHQ6	Polyubiquitin 9	AT5G37640.1	ubiquitin 9 	LOC_Os09g31031.3	"ubiquitin family protein, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210978.1.S1_at	A	A1MS	POPTR_0030s00560	POPTR_0030s00560 (9)	scaffold_30:290036-290683(+) (9)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210979.1.S1_at	A	A1TS	POPTR_0013s03510	POPTR_0013s03510 (11)	scaffold_13:2181445-2181828(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g35254.1	"transposon protein, putative, CACTA, En/Spm sub-class"	Medtr8g043420.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210980.1.S1_at	A	A1TS	POPTR_0013s03500	POPTR_0013s03500 (11)	scaffold_13:2174404-2174839(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210981.1.S1_at	A	A1MS	POPTR_0013s03480	POPTR_0013s03480 (9)	scaffold_13:2156201-2156505(-) (9)	NA	Q05212	DNA-damage-repair/toleration protein DRT102	AT3G04880.1	DNA-damage-repair/toleration protein (DRT102) 	LOC_Os01g36090.1	"DNA-damage-repair/toleration protein DRT102, putative, expressed"	Medtr7g140600.1	Ribose/galactose isomerase; Cupin region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210982.1.S1_at	A	A1TS	POPTR_0013s03460	POPTR_0013s03460 (11)	scaffold_13:2143058-2143837(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g59210.1	hypothetical protein	Medtr5g006290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210983.1.S1_at	A	A1TS	POPTR_0013s03570	POPTR_0013s03570 (10)	scaffold_13:2269127-2269666(+) (11)	NA	NA	NA	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	NA	NA	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210983.1.S1_s_at	A	A2TS	POPTR_0013s03570	POPTR_0013s03570 (11)//POPTR_0013s03410 (10)	scaffold_13:2109333-2109595(-) (10)//scaffold_13:2269242-2269599(+) (11)	NA	NA	NA	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	NA	NA	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210984.1.S1_at	A	A1TS	POPTR_0013s03580	POPTR_0013s03580 (11)	scaffold_13:2272072-2272183(+) (11)	NA	NA	NA	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210985.1.S1_at	A	A1TS	POPTR_0013s03400	POPTR_0013s03400 (11)	scaffold_13:2100803-2100971(-) (11)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.210986.1.S1_at	A	A2TS	POPTR_0013s03400	POPTR_0013s03400 (10)//POPTR_0013s03620 (9)	scaffold_13:2098344-2098879(-) (10)//scaffold_13:2307565-2308081(+) (9)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.210988.1.S1_at	A	A1TS	POPTR_0013s03650	POPTR_0013s03650 (11)	scaffold_13:2318832-2319315(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT4G14750.1	IQ-domain 19 	LOC_Os10g28420.1	"IQ calmodulin-binding motif family protein, putative"	Medtr7g140730.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210989.1.S1_at	A	A1TS	POPTR_0013s03670	POPTR_0013s03670 (11)	scaffold_13:2340906-2341494(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT5G28300.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g096240.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21099.1.S1_s_at	A	A1TS	POPTR_0007s10780	POPTR_0007s10780 (10)	scaffold_7:10863390-10864145(-) (10)	NA	P47927	Floral homeotic protein APETALA 2	AT4G36920.2	Integrase-type DNA-binding superfamily protein 	LOC_Os04g55560.3	"AP2 domain containing protein, expressed"	Medtr5g016710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.210991.1.S1_at	A	A1TS	POPTR_0013s03720	POPTR_0013s03720 (11)	scaffold_13:2365926-2367003(-) (11)	NA	Q9FGY9	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase	AT5G49570.1	peptide-N-glycanase 1 	LOC_Os07g31460.1	"peptide-Nasparagine amidase, putative, expressed"	Medtr7g140800.1	Transglutaminase-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.210993.1.S1_at	A	A1TS	POPTR_0013s03810	POPTR_0013s03810 (11)	scaffold_13:2471485-2472122(-) (11)	NA	NA	NA	AT4G12540.1	unknown protein; Has 29 Blast hits to 26 proteins in 11 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g45580.1	expressed protein	Medtr8g015990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210994.1.S1_at	A	A1TS	POPTR_0013s03830	POPTR_0013s03830 (11)	scaffold_13:2496180-2497543(+) (11)	NA	O22768	Transcription factor UNE12	AT4G02590.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g58330.1	"BHLH transcription factor, putative, expressed"	Medtr1g083450.2	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210994.1.S1_x_at	A	A1TS	POPTR_0013s03830	POPTR_0013s03830 (11)	scaffold_13:2496180-2497717(+) (11)	NA	O22768	Transcription factor UNE12	AT4G02590.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g58330.1	"BHLH transcription factor, putative, expressed"	Medtr1g083450.2	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210995.1.S1_at	A	A1TS	POPTR_0013s03840	POPTR_0013s03840 (10)	scaffold_13:2499998-2500445(+) (11)	NA	Q9SR01	"Pentatricopeptide repeat-containing protein At3g04750, mitochondrial"	AT3G04750.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g53170.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210996.1.S1_at	A	A1TS	POPTR_0013s03850	POPTR_0013s03850 (11)	scaffold_13:2501949-2502533(-) (11)	NA	P0CB66	Putative mediator of RNA polymerase II transcription subunit 14	AT3G04740.1	RNA polymerase II transcription mediators 	LOC_Os09g10960.1	"SWP, putative, expressed"	Medtr1g106750.1	"SWP, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.210997.1.S1_at	A	A1MS	POPTR_0013s03880	POPTR_0013s03880 (11)	scaffold_13:2543634-2543875(-) (11)	NA	O65719	Heat shock cognate 70 kDa protein 3	AT1G56410.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os03g60620.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210998.1.S1_at	A	A1TS	POPTR_0013s03950	POPTR_0013s03950 (11)	scaffold_13:2585067-2587131(-) (11)	NA	NA	NA	AT1G72030.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os07g16130.1	"acetyltransferase, GNAT family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210999.1.S1_at	A	A1TS	POPTR_0013s03960	POPTR_0013s03960 (11)	scaffold_13:2589948-2593155(-) (11)	NA	P16157	Ankyrin-1	AT3G04710.3	ankyrin repeat family protein 	LOC_Os05g01310.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g046490.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211.1.A1_a_at	A	A1TS	POPTR_0001s28880	POPTR_0001s28880 (11)	scaffold_1:27643664-27643921(+) (11)	NA	NA	NA	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211.2.A1_at	A	A1MS	POPTR_0001s28880	POPTR_0001s28880 (11)	scaffold_1:27643585-27644000(+) (11)	NA	NA	NA	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211000.1.S1_at	A	A1TS	POPTR_0013s03970	POPTR_0013s03970 (11)	scaffold_13:2601714-2602280(-) (11)	NA	NA	NA	AT1G08790.1	Protein of unknown function (DUF1685) 	LOC_Os04g21340.1	expressed protein	Medtr5g017390.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211001.1.S1_at	A	A1MS	POPTR_0013s04020	POPTR_0013s04020 (11)	scaffold_13:2651110-2651688(+) (11)	NA	O22969	Uncharacterized protein At2g34160	AT3G04620.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.211002.1.S1_at	A	A1TS	POPTR_0013s04020	POPTR_0013s04020 (11)	scaffold_13:2651750-2652848(+) (11)	NA	O22969	Uncharacterized protein At2g34160	AT3G04620.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.211002.1.S1_x_at	A	A1TS	POPTR_0013s04020	POPTR_0013s04020 (10)	scaffold_13:2651746-2652837(+) (11)	NA	O22969	Uncharacterized protein At2g34160	AT3G04620.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.211003.1.S1_at	A	A1TS	POPTR_0013s04040	POPTR_0013s04040 (9)	scaffold_13:2666542-2667187(-) (9)	NA	NA	NA	AT1G01225.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211004.1.S1_at	A	A1TS	POPTR_0013s04060	POPTR_0013s04060 (11)	scaffold_13:2695105-2695630(+) (11)	NA	NA	NA	AT1G08800.2	"Protein of unknown function, DUF593 "	LOC_Os01g56790.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211006.1.S1_at	A	A1TS	POPTR_0013s04110	POPTR_0013s04110 (11)	scaffold_13:2740745-2742536(+) (11)	NA	P54697	Myosin-J heavy chain	AT1G54560.1	Myosin family protein with Dil domain 	LOC_Os06g29350.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.211007.1.S1_at	A	A1TS	POPTR_0013s04170	POPTR_0013s04170 (11)	scaffold_13:2786677-2787242(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT4G14465.1	AT-hook motif nuclear-localized protein 20 	LOC_Os02g57520.1	"DNA binding protein, putative, expressed"	Medtr1g093390.1	"DNA-binding protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211008.1.S1_at	A	A1TS	POPTR_0013s04190	POPTR_0013s04190 (10)	scaffold_13:2798714-2799260(-) (11)	NA	O82380	"Pentatricopeptide repeat-containing protein At2g29760, chloroplastic"	AT2G29760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g08660.1	"pentatricopeptide, putative, expressed"	Medtr8g119600.1	Pancreatic ribonuclease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211009.1.S1_at	A	A1TS	POPTR_0013s04220	POPTR_0013s04220 (9)	scaffold_13:2810248-2813552(+) (10)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr2g088220.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.211011.1.S1_at	A	A1TS	POPTR_0013s04260	POPTR_0013s04260 (10)	scaffold_13:2866022-2866243(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211012.1.S1_at	A	A1TS	POPTR_0013s04280	POPTR_0013s04280 (11)	scaffold_13:2893284-2893738(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211013.1.S1_at	A	A1TS	POPTR_0013s04310	POPTR_0013s04310 (11)	scaffold_13:2917572-2918308(+) (11)	NA	P48489	Serine/threonine-protein phosphatase PP1	AT2G39840.1	type one serine/threonine protein phosphatase 4 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.211014.1.S1_at	A	A1TS	POPTR_0013s04320	POPTR_0013s04320 (11)	scaffold_13:2929532-2929895(-) (11)	NA	Q9C6P3	Calcium-dependent protein kinase 33	AT3G04530.1	phosphoenolpyruvate carboxylase kinase 2 	LOC_Os02g56310.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g093530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211014.1.S1_x_at	A	A1TS	POPTR_0013s04320	POPTR_0013s04320 (11)	scaffold_13:2929532-2929895(-) (11)	NA	Q9C6P3	Calcium-dependent protein kinase 33	AT3G04530.1	phosphoenolpyruvate carboxylase kinase 2 	LOC_Os02g56310.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g093530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211015.1.S1_at	A	A1TS	POPTR_0013s04370	POPTR_0013s04370 (11)	scaffold_13:3002689-3002932(-) (11)	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT1G08620.2	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os05g10770.1	"transcription factor jumonji, putative, expressed"	AC225479_20.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; FY-rich, C-terminal; Zinc finger, C5HC2-type AC225479.3 88241-93710 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.211016.1.S1_at	A	A1TS	POPTR_0013s04420	POPTR_0013s04420 (11)	scaffold_13:3026367-3028371(-) (11)	NA	A3KPW7	Protein prenyltransferase alpha subunit repeat-containing protein 1	AT1G10095.1	Protein prenylyltransferase superfamily protein 	LOC_Os01g49060.1	"prenyltransferase, putative, expressed"	NA	NA	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity	NA
PtpAffx.211017.1.S1_at	A	A1TS	POPTR_0013s04430	POPTR_0013s04430 (11)	scaffold_13:3035247-3036555(+) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G14340.1	casein kinase I 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g043790.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211018.1.S1_at	A	A1TS	POPTR_0013s04450	POPTR_0013s04450 (11)	scaffold_13:3049082-3050609(+) (11)	NA	Q06190	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha	AT5G28900.1	Calcium-binding EF-hand family protein 	LOC_Os10g33680.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed"	Medtr1g093540.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211019.1.S1_at	A	A1TS	POPTR_0013s04460	POPTR_0013s04460 (11)	scaffold_13:3058494-3059063(+) (11)	NA	Q9USQ7	Meiotically up-regulated gene 71 protein	AT3G04480.1	endoribonucleases 	LOC_Os02g56565.1	"endoribonuclease, putative, expressed"	Medtr7g135060.1	Endoribonuclease L-PSP; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211020.1.S1_at	A	A1TS	POPTR_0013s04490	POPTR_0013s04490 (11)	scaffold_13:3086991-3087433(+) (11)	NA	NA	NA	AT1G04030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1); Has 1835 Blast hits to 1511 proteins in 238 species: Archae - 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants - 187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink). 	LOC_Os04g43230.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211021.1.S1_at	A	A1TS	POPTR_0013s04530	POPTR_0013s04530 (11)	scaffold_13:3107562-3109831(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT5G29000.2	Homeodomain-like superfamily protein 	LOC_Os03g21240.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211023.1.S1_at	A	A1TS	POPTR_0013s04570	POPTR_0013s04570 (11)	scaffold_13:3131867-3132313(-) (11)	NA	Q6NM73	Cysteine-rich repeat secretory protein 3	AT1G04520.1	plasmodesmata-located protein 2 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr1g064990.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211024.1.S1_at	A	A1TS	POPTR_0013s04580	POPTR_0013s04580 (11)	scaffold_13:3143946-3144221(+) (11)	NA	NA	NA	AT3G04350.1	Plant protein of unknown function (DUF946) 	LOC_Os03g04930.1	expressed protein	Medtr1g093840.1	"Protein of unknown function DUF946, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211025.1.S1_at	A	A1MS	POPTR_0013s04590	POPTR_0013s04590 (11)	scaffold_13:3146800-3147299(+) (11)	NA	Q9FKP8	ZF-HD homeobox protein At5g65410	AT2G33320.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os12g10630.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr1g093800.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211027.1.S1_at	A	A1TS	POPTR_0013s04610	POPTR_0013s04610 (11)	scaffold_13:3151515-3152231(-) (11)	NA	Q61687	Transcriptional regulator ATRX	AT1G08600.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os10g31970.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr1g093850.1	"SNF2-related; Helicase, C-terminal "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.211028.1.S1_at	A	A1MS	POPTR_0013s04620	POPTR_0013s04620 (9)	scaffold_13:3176233-3178944(+) (10)	NA	P72991	ATP-dependent zinc metalloprotease FtsH 3	AT3G04340.1	FtsH extracellular protease family 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr1g094060.1	Peptidase M41; Caspase Recruitment; AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.21103.1.S1_at	A	A1TS	POPTR_0006s00780	POPTR_0006s00780 (11)	scaffold_6:410115-410618(-) (11)	NA	O23482	Oligopeptide transporter 3	AT4G16370.1	oligopeptide transporter 	LOC_Os03g54000.1	"oligopeptide transporter, putative, expressed"	Medtr4g121720.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211030.1.S1_at	A	A1TS	POPTR_0013s04630	POPTR_0013s04630 (11)	scaffold_13:3185747-3186419(-) (11)	NA	Q9FRS6	Leucine-rich repeat receptor-like protein kinase PXL1	AT1G08590.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g05140.1	"receptor-like protein kinase 2 precursor, putative"	Medtr1g094070.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211031.1.S1_at	A	A1TS	POPTR_0013s04650	POPTR_0013s04650 (11)	scaffold_13:3198078-3198603(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g53580.1	"3-5 exonuclease domain-containing protein, putative"	Medtr2g085350.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211032.1.S1_at	A	A1TS	POPTR_0013s04660	POPTR_0013s04660 (11)	scaffold_13:3207513-3207563(+) (11)	NA	P46976	Glycogenin-1	AT5G18480.1	plant glycogenin-like starch initiation protein 6 	LOC_Os02g41520.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g093950.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.211033.1.S1_at	A	A1TS	POPTR_0013s04670	POPTR_0013s04670 (11)	scaffold_13:3209122-3209301(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211034.1.S1_at	A	A1TS	POPTR_0013s04700	POPTR_0013s04700 (10)	scaffold_13:3240212-3240690(-) (10)	NA	Q8BUV8	Protein GPR107	AT5G18520.1	Lung seven transmembrane receptor family protein 	LOC_Os04g42960.1	"Lung seven transmembrane receptor domain containing protein, putative, expressed"	Medtr7g120530.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.211037.1.S1_at	A	A1MS	POPTR_0013s04800	POPTR_0013s04800 (11)	scaffold_13:3311664-3312117(+) (11)	NA	Q5S2C3	Protein PIR	AT5G18410.2	transcription activators 	LOC_Os03g05020.1	"PIR, putative, expressed"	Medtr7g143230.1	Cytoplasmic fragile X mental retardation protein interacting protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211038.1.S1_s_at	A	A2TS	POPTR_0013s04800	POPTR_0019s04200 (11)//POPTR_0013s04800 (11)	scaffold_13:3321233-3321348(+) (11)//scaffold_19:4294501-4294616(+) (11)	NA	Q5S2C3	Protein PIR	AT5G18410.2	transcription activators 	LOC_Os03g05020.1	"PIR, putative, expressed"	Medtr7g143230.1	Cytoplasmic fragile X mental retardation protein interacting protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211039.1.S1_at	A	A1TS	POPTR_0013s04810	POPTR_0013s04810 (11)	scaffold_13:3338648-3339915(+) (11)	NA	Q9LVP0	Probable leucine-rich repeat receptor-like protein kinase At5g63930	AT5G63930.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g42700.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211040.1.S1_s_at	A	A2MS	POPTR_0013s04840	POPTR_0013s04840 (10)//POPTR_0013s04850 (10)	scaffold_13:3367946-3368259(-) (10)//scaffold_13:3376215-3376528(-) (10)	NA	Q9SFF9	Germin-like protein subfamily 1 member 7	AT3G05950.1	RmlC-like cupins superfamily protein 	LOC_Os12g05840.1	"Cupin domain containing protein, expressed"	Medtr1g093090.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.211042.1.S1_s_at	A	A3TS	POPTR_0013s04840	POPTR_0013s04840 (11)//POPTR_0013s04850 (11)//POPTR_0013s04860 (11)	scaffold_13:3367744-3367935(-) (11)//scaffold_13:3376013-3376204(-) (11)//scaffold_13:3382085-3382276(-) (11)	NA	Q9SFF9	Germin-like protein subfamily 1 member 7	AT3G05950.1	RmlC-like cupins superfamily protein 	LOC_Os12g05840.1	"Cupin domain containing protein, expressed"	Medtr1g093090.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.211043.1.S1_at	A	A1TS	POPTR_0013s04920	POPTR_0013s04920 (11)	scaffold_13:3435121-3435160(-) (11)	NA	Q9FID0	Germin-like protein subfamily 1 member 14	AT5G39110.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr6g005300.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.211044.1.S1_s_at	A	A2TS	POPTR_0013s04900	POPTR_0013s04900 (11)//POPTR_0013s04930 (11)	scaffold_13:3417325-3417556(+) (11)//scaffold_13:3446525-3446756(+) (11)	NA	Q9SRT0	U-box domain-containing protein 9	AT3G07360.1	plant U-box 9 	LOC_Os02g28720.1	"spotted leaf 11, putative, expressed"	Medtr7g143240.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.211045.1.S1_s_at	A	A4TS	POPTR_0013s04870	POPTR_0013s04870 (11)//POPTR_0013s04880 (11)//POPTR_0013s04920 (11)//POPTR_0013s04910 (11)	scaffold_13:3389933-3389970(-) (11)//scaffold_13:3394786-3394823(-) (11)//scaffold_13:3422052-3422089(-) (11)//scaffold_13:3435369-3435406(-) (11)	NA	P92997	Germin-like protein subfamily 1 member 13	AT5G39110.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr6g005300.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.211047.1.S1_at	A	A1TS	POPTR_0013s05020	POPTR_0013s05020 (11)	scaffold_13:3545600-3546106(-) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	NA	NA	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211048.1.S1_s_at	A	A2TS	POPTR_0013s05050	POPTR_0671s00210 (11)//POPTR_0013s05050 (11)	scaffold_13:3563617-3564146(+) (11)//scaffold_671:8338-8867(-) (11)	NA	Q9LFQ4	"Pentatricopeptide repeat-containing protein At5g15010, mitochondrial"	AT5G15010.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g60010.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g099950.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211050.1.S1_at	A	A1TS	POPTR_0671s00200	POPTR_0671s00200 (11)	scaffold_671:2955-3645(-) (11)	NA	P52914	Nucleoside-triphosphatase	AT5G18280.1	apyrase 2 	LOC_Os03g21120.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211050.1.S1_s_at	A	A2TS	POPTR_0013s05060	POPTR_0671s00200 (11)//POPTR_0013s05060 (11)	scaffold_13:3578636-3579182(+) (11)//scaffold_671:3632-4178(-) (11)	NA	P52914	Nucleoside-triphosphatase	AT5G18280.1	apyrase 2 	LOC_Os03g21120.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211052.1.S1_at	A	A1TS	POPTR_0013s05110	POPTR_0013s05110 (11)	scaffold_13:3621001-3621691(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G18270.1	Arabidopsis NAC domain containing protein 87 	LOC_Os03g21030.1	"no apical meristem protein, putative, expressed"	Medtr7g100140.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211052.1.S1_x_at	A	A1TS	POPTR_0013s05110	POPTR_0013s05110 (11)	scaffold_13:3621001-3621803(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G18270.1	Arabidopsis NAC domain containing protein 87 	LOC_Os03g21030.1	"no apical meristem protein, putative, expressed"	Medtr7g100140.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211053.1.S1_at	A	A1TS	POPTR_0013s05130	POPTR_0013s05130 (11)	scaffold_13:3640596-3641195(+) (11)	NA	Q680Z7	"Pentatricopeptide repeat-containing protein At1g09220, mitochondrial"	AT1G09220.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g60000.1	"pentatricopeptide, putative, expressed"	Medtr4g024720.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211054.1.S1_at	A	A1TS	POPTR_0013s05140	POPTR_0013s05140 (11)	scaffold_13:3645321-3645908(+) (11)	NA	P80728	Mavicyanin	AT2G32300.1	uclacyanin 1 	LOC_Os07g07170.1	"plastocyanin-like domain containing protein, putative"	Medtr7g102930.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.211055.1.S1_at	A	A1TS	POPTR_0013s05150	POPTR_0013s05150 (11)	scaffold_13:3646954-3647201(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g097890.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211056.1.S1_at	A	A1TS	POPTR_0464s00210	POPTR_0464s00210 (9)	scaffold_464:5529-6076(+) (11)	POPTR_0013s05160 (8)	NA	NA	AT1G54400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g45340.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr7g102860.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211057.1.S1_at	A	A2TS	POPTR_0013s05170	POPTR_0013s05170 (11)//POPTR_0464s00200 (10)	scaffold_13:3653314-3654042(-) (11)//scaffold_464:3185-3839(+) (10)	NA	NA	NA	AT1G54400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g06170.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr7g102860.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211058.1.S1_at	A	A1TS	POPTR_0013s05180	POPTR_0013s05180 (11)	scaffold_13:3663212-3664191(-) (11)	NA	Q94CK4	Annexin D8	AT5G12380.1	annexin 8 	LOC_Os09g27990.1	"annexin, putative, expressed"	Medtr4g154520.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.211059.1.S1_at	A	A1TS	POPTR_0013s05220	POPTR_0013s05220 (11)	scaffold_13:3717965-3718491(+) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT5G17980.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211060.1.S1_at	A	A1MS	POPTR_0013s05240	POPTR_0013s05240 (10)	scaffold_13:3728826-3729685(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211062.1.S1_at	A	A1MS	POPTR_0013s05260	POPTR_0013s05260 (11)	scaffold_13:3741957-3742358(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT1G58400.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os01g58510.1	NB-ARC domain containing protein	Medtr8g011500.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211063.1.S1_at	A	A1TS	POPTR_0013s05270	POPTR_0013s05270 (11)	scaffold_13:3744807-3745213(+) (11)	NA	Q8VZU2	Syntaxin-132	AT5G08080.1	syntaxin of plants 132 	NA	NA	Medtr2g103770.1	"Syntaxin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211064.1.S1_at	A	A1TS	POPTR_0013s05280	POPTR_0013s05280 (11)	scaffold_13:3746626-3747714(-) (11)	POPTR_0019s05230 (7)	Q8W486	DUF246 domain-containing protein At1g04910	AT3G03810.1	O-fucosyltransferase family protein 	LOC_Os05g04190.2	"growth regulator related protein, putative, expressed"	Medtr1g008430.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211065.1.S1_at	A	A1MS	POPTR_0013s05290	POPTR_0013s05290 (9)	scaffold_13:3757789-3758682(+) (10)	NA	P51427	40S ribosomal protein S5-2	AT3G11940.2	ribosomal protein 5A 	LOC_Os11g29190.2	"40S ribosomal protein S5, putative, expressed"	AC235488_12.1	Ribosomal protein S7 AC235488.1 52998-48408 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211067.1.S1_at	A	A1TS	POPTR_0013s05330	POPTR_0013s05330 (11)	scaffold_13:3814164-3814677(+) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os07g10410.1	AP2 domain containing protein	Medtr7g102550.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.211068.1.S1_at	A	A1TA	POPTR_0013s05440	POPTR_0013s05440 (11)	scaffold_13:3888833-3892219(-) (11)//scaffold_13:3892172-3892414(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211069.1.S1_at	A	A1TS	POPTR_0013s05460	POPTR_0013s05460 (9)	scaffold_13:3903086-3903638(+) (9)	NA	C4L424	Chaperone protein dnaJ	AT5G18140.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g12236.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g101890.1	Chaperone DnaJ 	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.211070.1.S1_at	A	A1TS	POPTR_0013s05480	POPTR_0013s05480 (10)	scaffold_13:3921675-3922153(+) (10)	NA	Q43314	Glutamate dehydrogenase 1	AT5G18170.1	glutamate dehydrogenase 1 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.211072.1.S1_at	A	A1TS	POPTR_0013s05520	POPTR_0013s05520 (11)	scaffold_13:3939399-3939729(-) (11)	NA	NA	NA	AT1G54385.2	ARM repeat superfamily protein 	LOC_Os11g37100.1	expressed protein	Medtr6g030700.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211073.1.S1_at	A	A1TS	POPTR_0013s05550	POPTR_0013s05550 (9)	scaffold_13:3953216-3953731(+) (11)	NA	Q9SVP7	Pentatricopeptide repeat-containing protein At4g13650	AT4G13650.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g36620.1	"pentatricopeptide, putative, expressed"	Medtr6g030720.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211074.1.S1_at	A	A1TS	POPTR_0013s05590	POPTR_0013s05590 (11)	scaffold_13:3992192-3996358(+) (11)	NA	NA	NA	AT2G23840.1	HNH endonuclease 	LOC_Os07g07480.1	"HNH endonuclease domain-containing protein, putative, expressed"	Medtr7g100320.1	HNH nuclease 	NA	GO:0004519|endonuclease activity||GO:0003676|nucleic acid binding	NA
PtpAffx.211075.1.S1_at	A	A1TS	POPTR_0013s05630	POPTR_0013s05630 (11)	scaffold_13:4032043-4033496(-) (11)//scaffold_877:978-1050(+) (9)	NA	O75175	CCR4-NOT transcription complex subunit 3	AT5G18230.1	transcription regulator NOT2/NOT3/NOT5 family protein 	LOC_Os03g44900.1	"CCR4-NOT transcription factor, putative, expressed"	Medtr7g100260.1	"Not CCR4-Not complex component, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.211076.1.S1_at	A	A1TS	POPTR_0013s05660	POPTR_0013s05660 (11)	scaffold_13:4066639-4067032(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g087940.1	TIR; NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.211077.1.S1_at	A	A1TS	POPTR_0013s05670	POPTR_0013s05670 (11)	scaffold_13:4071006-4071581(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT3G04030.3	Homeodomain-like superfamily protein 	LOC_Os03g20900.1	"Myb transcription factor, putative, expressed"	Medtr2g107820.1	"Peptidase M22, glycoprotease; Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211078.1.S1_at	A	A1TS	POPTR_0013s05680	POPTR_0013s05680 (11)	scaffold_13:4096045-4096447(+) (11)	NA	Q9USH8	Glucosidase 2 subunit beta	AT5G56360.1	calmodulin-binding protein 	LOC_Os01g16970.1	"glucosidase II beta subunit-like domain containing protein, expressed"	Medtr4g115150.1	Glucosidase II beta subunit-like 	NA	GO:0005515|protein binding	NA
PtpAffx.211079.1.S1_at	A	A1TS	POPTR_0013s05690	POPTR_0013s05690 (11)	scaffold_13:4104533-4105106(+) (11)	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT5G56350.1	Pyruvate kinase family protein 	LOC_Os01g16960.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.211080.1.S1_at	A	A1TS	POPTR_0013s05730	POPTR_0013s05730 (11)	scaffold_13:4116130-4116676(-) (11)	NA	O80622	Expansin-A15	AT2G03090.1	expansin A15 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211082.1.S1_at	A	A1TS	POPTR_0013s05770	POPTR_0013s05770 (11)	scaffold_13:4157537-4157935(+) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211083.1.S1_at	A	A1TS	POPTR_0013s05780	POPTR_0013s05780 (11)	scaffold_13:4166048-4166782(+) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211084.1.S1_at	A	A1TS	POPTR_0013s05800	POPTR_0013s05800 (11)	scaffold_13:4185601-4186064(-) (11)	NA	Q41001	Blue copper protein	AT2G32300.1	uclacyanin 1 	LOC_Os03g57740.1	"plastocyanin-like domain containing protein, putative"	Medtr7g102840.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.211085.1.S1_at	A	A1TS	POPTR_0013s05810	POPTR_0013s05810 (9)	scaffold_13:4190566-4193548(+) (11)	NA	Q3UFM5	Nucleolar MIF4G domain-containing protein 1	AT5G17930.1	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os05g05450.1	"MA3 domain containing protein, expressed"	Medtr7g103040.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.211086.1.S1_at	A	A1TS	POPTR_0013s05820	POPTR_0013s05820 (9)	scaffold_13:4196676-4198512(-) (11)	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.211086.1.S1_s_at	A	A1TS	POPTR_0013s05820	POPTR_0013s05820 (11)	scaffold_13:4196939-4198457(-) (11)	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.211088.1.S1_at	A	A1TS	POPTR_0013s05860	POPTR_0013s05860 (11)	scaffold_13:4232198-4232754(-) (11)	NA	P16157	Ankyrin-1	AT5G13530.2	protein kinases;ubiquitin-protein ligases 	LOC_Os03g45290.1	"ankyrin repeat domain-containing protein 50, putative, expressed"	Medtr1g110930.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.211089.1.S1_at	A	A1TS	POPTR_0013s05930	POPTR_0013s05930 (11)	scaffold_13:4305716-4306864(-) (11)	NA	NA	NA	AT2G21720.1	Plant protein of unknown function (DUF639) 	LOC_Os03g06180.1	expressed protein	Medtr7g103110.1	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211091.1.S1_s_at	A	A5TS	POPTR_0013s06000	POPTR_0013s06000 (11)//POPTR_0013s06030 (11)//POPTR_0013s06010 (11)//POPTR_1158s00200 (11)//POPTR_0013s06020 (11)	scaffold_1158:2825-3089(+) (11)//scaffold_13:4407204-4407468(+) (11)//scaffold_13:4438152-4438416(+) (11)//scaffold_13:4442467-4442731(+) (11)//scaffold_13:4446779-4447043(+) (11)	NA	Q9FIC8	Germin-like protein subfamily 1 member 16	AT5G39130.1	RmlC-like cupins superfamily protein 	LOC_Os12g05860.1	"Cupin domain containing protein, expressed"	Medtr1g093090.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.211092.1.S1_at	A	A1TS	POPTR_0013s06050	POPTR_0013s06050 (11)	scaffold_13:4478174-4478444(+) (11)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT3G03770.2	Leucine-rich repeat protein kinase family protein 	LOC_Os07g07230.2	"protein kinase, putative, expressed"	Medtr7g103210.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.211093.1.S1_at	A	A1TS	POPTR_0013s06070	POPTR_0013s06070 (10)	scaffold_13:4489955-4490220(-) (11)	NA	Q9SRV3	LOB domain-containing protein 20	AT3G03760.1	LOB domain-containing protein 20 	LOC_Os03g14270.1	"DUF260 domain containing protein, putative"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211095.1.S1_at	A	A1TS	POPTR_0013s06090	POPTR_0013s06090 (11)	scaffold_13:4498593-4500500(-) (11)	NA	NA	NA	AT5G35220.1	Peptidase M50 family protein 	LOC_Os03g57840.1	"peptidase M50, mammalian sterol-regulatory element binding protein, putative, expressed"	Medtr7g103220.1	Peptidase M50 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.211098.1.S1_at	A	A1TS	POPTR_0013s06140	POPTR_0013s06140 (10)	scaffold_13:4545414-4545993(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211100.1.S1_at	A	A1TS	POPTR_0013s06180	POPTR_0013s06180 (10)	scaffold_13:4573168-4575173(-) (10)	NA	Q6MDI2	Polyribonucleotide nucleotidyltransferase	AT3G03710.1	"polyribonucleotide nucleotidyltransferase, putative "	LOC_Os07g07310.1	"polynucleotide phosphorylase, putative, expressed"	Medtr7g103420.1	Polyribonucleotide nucleotidyltransferase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.211101.1.S1_at	A	A1TS	POPTR_0013s06230	POPTR_0013s06230 (11)	scaffold_13:4612182-4612598(-) (11)	NA	Q4WYG7	Protein pns1	AT3G04440.1	Plasma-membrane choline transporter family protein 	LOC_Os07g46240.1	"choline transporter-related, putative, expressed"	Medtr7g103510.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211102.1.S1_at	A	A1TS	POPTR_0013s06260	POPTR_0013s06260 (10)	scaffold_13:4627932-4628252(-) (10)	NA	NA	NA	AT3G03680.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os03g44890.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr8g112880.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211103.1.S1_at	A	A1TS	POPTR_0013s06270	POPTR_0013s06270 (11)	scaffold_13:4650368-4650706(-) (11)	NA	NA	NA	AT3G03680.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os03g44890.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr8g112880.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211104.1.S1_s_at	A	A1TS	POPTR_0013s06310	POPTR_0013s06310 (11)	scaffold_13:4772356-4773700(+) (11)	NA	Q6X7J3	WUSCHEL-related homeobox 11	AT3G03660.1	WUSCHEL related homeobox 11 	LOC_Os07g48560.1	"homeobox domain containing protein, expressed"	Medtr7g103730.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.211106.1.S1_at	A	A1TS	POPTR_0013s06320	POPTR_0013s06320 (10)	scaffold_13:4799864-4799897(-) (10)	NA	Q9FDW1	Transcription factor MYB44	AT5G17800.1	myb domain protein 56 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr7g103750.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211106.1.S1_s_at	A	A1TS	POPTR_0013s06320	POPTR_0013s06320 (11)	scaffold_13:4799403-4799533(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT5G17800.1	myb domain protein 56 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr7g103750.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211107.1.S1_at	A	A1TS	POPTR_0013s06330	POPTR_0013s06330 (11)	scaffold_13:4844977-4845139(-) (11)	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211107.1.S1_x_at	A	A1TS	POPTR_0013s06330	POPTR_0013s06330 (11)	scaffold_13:4844941-4845467(-) (11)	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211108.1.S1_s_at	A	A1TS	POPTR_0013s06400	POPTR_0013s06400 (11)	scaffold_13:4977551-4978487(-) (11)	NA	Q9CAZ0	F-box protein SKIP24	AT1G08710.2	F-box family protein 	LOC_Os01g59910.1	"OsFBX29 - F-box domain containing protein, expressed"	Medtr7g103990.1	"F-box family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211110.1.S1_at	A	A1TS	POPTR_0013s06420	POPTR_0013s06420 (11)	scaffold_13:4998862-4999452(-) (11)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os02g41930.1	OsFBX57 - F-box domain containing protein	Medtr2g029950.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211111.1.S1_at	A	A1TS	POPTR_0013s06450	POPTR_0013s06450 (11)	scaffold_13:5037890-5038100(+) (11)	NA	Q9FJT8	Histone acetyltransferase type B catalytic subunit	AT5G56740.1	histone acetyltransferase of the GNAT family 2 	LOC_Os09g17850.1	"acetyltransferase type B catalytic subunit, putative, expressed"	Medtr5g088060.1	"Histone acetyltransferase type B catalytic subunit, putative "	GO:0016568|chromatin modification	GO:0004402|histone acetyltransferase activity	NA
PtpAffx.211112.1.S1_at	A	A1TS	POPTR_0013s06460	POPTR_0013s06460 (11)	scaffold_13:5047809-5050405(+) (11)	NA	Q8RXE7	Probable ADP-ribosylation factor GTPase-activating protein AGD14	AT1G08680.1	ARF GAP-like zinc finger-containing protein ZIGA4 	LOC_Os03g20720.1	"GTPase-activating protein, putative, expressed"	Medtr6g102260.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	GO:0005622|intracellular
PtpAffx.211113.1.S1_at	A	A1TS	POPTR_0013s06490	POPTR_0013s06490 (11)	scaffold_13:5088730-5090791(+) (11)	NA	O59751	Kinesin-like protein 6	AT1G20060.1	ATP binding microtubule motor family protein 	LOC_Os02g01180.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g108520.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.211114.1.S1_at	A	A1TS	POPTR_0013s06510	POPTR_0013s06510 (11)	scaffold_13:5114700-5115249(+) (11)	NA	NA	NA	AT5G17910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1). 	LOC_Os05g41150.1	expressed protein	Medtr7g104360.2	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211115.1.S1_at	A	A1TS	POPTR_0013s06540	POPTR_0013s06540 (11)	scaffold_13:5142081-5142906(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G03620.1	MATE efflux family protein 	LOC_Os12g03260.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.211116.1.S1_s_at	A	A2TS	POPTR_0013s06560	POPTR_0013s06560 (11)//POPTR_0013s06640 (11)	scaffold_13:5180849-5181943(-) (11)//scaffold_13:5313989-5315083(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G03620.1	MATE efflux family protein 	LOC_Os12g03260.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.211119.1.S1_at	A	A1TS	POPTR_0013s06640	POPTR_0013s06640 (11)	scaffold_13:5313945-5315154(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G03620.1	MATE efflux family protein 	LOC_Os12g03260.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.211120.1.S1_at	A	A1TS	POPTR_0013s06690	POPTR_0013s06690 (11)	scaffold_13:5403331-5404108(+) (11)	NA	Q9SDX3	UTP--glucose-1-phosphate uridylyltransferase	AT3G03250.1	UDP-GLUCOSE PYROPHOSPHORYLASE 1 	LOC_Os02g02560.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	Medtr3g163770.1	Ribosomal protein S2; UTP--glucose-1-phosphate uridylyltransferase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0016779|nucleotidyltransferase activity	GO:0005840|ribosome
PtpAffx.211121.1.S1_at	A	A1TS	POPTR_0013s06730	POPTR_0013s06730 (11)	scaffold_13:5436617-5438980(+) (11)	NA	Q9FQ03	5'-3' exoribonuclease 3	AT1G75660.1	5'-3' exoribonuclease 3 	LOC_Os01g65220.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr4g079110.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211122.1.S1_at	A	A1TS	POPTR_0013s06770	POPTR_0013s06770 (11)	scaffold_13:5479283-5479549(-) (11)	NA	P26683	RNA polymerase sigma factor rpoD	AT1G08540.1	RNApolymerase sigma subunit 2 	LOC_Os11g26160.1	"RNA polymerase sigma factor, putative, expressed"	Medtr3g163870.1	"Winged helix repressor DNA-binding; RNA polymerase sigma factor RpoS, proteobacteria; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.211123.1.S1_at	A	A1TS	POPTR_0013s06790	POPTR_0013s06790 (11)	scaffold_13:5488008-5490392(-) (11)	NA	NA	NA	AT5G17670.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g03720.1	expressed protein	Medtr3g163900.1	PGAP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211124.1.S1_at	A	A2TS	POPTR_0013s06890	POPTR_0013s06890 (11)//POPTR_0006s22100 (10)	scaffold_13:5568525-5569065(-) (11)//scaffold_6:21133293-21133550(-) (10)	NA	NA	NA	AT3G28430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155); Has 243 Blast hits to 233 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 	LOC_Os04g23210.1	expressed protein	Medtr2g042960.1	"Protein CLEC16A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211125.1.S1_at	A	A1TS	POPTR_0013s06900	POPTR_0013s06900 (10)	scaffold_13:5592746-5595625(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g43075.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211126.1.S1_at	A	A1TS	POPTR_0013s06900	POPTR_0013s06900 (11)	scaffold_13:5600222-5601958(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g43075.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211127.1.S1_at	A	A1TS	POPTR_0013s06960	POPTR_0013s06960 (9)	scaffold_13:5654277-5654761(+) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140400.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211128.1.S1_at	A	A1TS	POPTR_0013s06990	POPTR_0013s06990 (11)	scaffold_13:5678748-5678857(-) (11)	NA	Q9LYG9	Uncharacterized protein At5g12080	AT5G12080.3	mechanosensitive channel of small conductance-like 10 	LOC_Os06g10410.1	"uncharacterized mscS family protein, putative, expressed"	Medtr3g139390.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.211129.1.S1_at	A	A1TS	POPTR_0013s07000	POPTR_0013s07000 (11)	scaffold_13:5687813-5688367(-) (11)	NA	Q9LYG9	Uncharacterized protein At5g12080	AT5G12080.3	mechanosensitive channel of small conductance-like 10 	LOC_Os06g10410.1	"uncharacterized mscS family protein, putative, expressed"	Medtr3g139330.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211131.1.S1_at	A	A1TS	POPTR_0013s07010	POPTR_0013s07010 (11)	scaffold_13:5709502-5710372(-) (11)	NA	Q9LYG9	Uncharacterized protein At5g12080	AT5G12080.3	mechanosensitive channel of small conductance-like 10 	LOC_Os06g10410.1	"uncharacterized mscS family protein, putative, expressed"	Medtr3g139390.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.211131.1.S1_s_at	A	A2TS	POPTR_0013s06990	POPTR_0013s06990 (11)//POPTR_0013s07010 (11)	scaffold_13:5678957-5679741(-) (11)//scaffold_13:5709632-5710470(-) (11)	NA	Q9LYG9	Uncharacterized protein At5g12080	AT5G12080.3	mechanosensitive channel of small conductance-like 10 	LOC_Os06g10410.1	"uncharacterized mscS family protein, putative, expressed"	Medtr3g139390.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.211132.1.S1_s_at	A	A1TS	POPTR_0013s07020	POPTR_0013s07020 (11)	scaffold_13:5716015-5716553(-) (11)	NA	Q9LYG9	Uncharacterized protein At5g12080	AT5G12080.3	mechanosensitive channel of small conductance-like 10 	LOC_Os06g10410.1	"uncharacterized mscS family protein, putative, expressed"	Medtr3g139330.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211134.1.S1_at	A	A1TS	POPTR_0013s07070	POPTR_0013s07070 (11)	scaffold_13:5788259-5788754(+) (11)	NA	NA	NA	AT3G03560.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g49960.2	expressed protein	Medtr7g035260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211135.1.S1_at	A	A1MS	POPTR_0013s07080	POPTR_0013s07080 (11)	scaffold_13:5792719-5793602(+) (11)	NA	NA	NA	AT3G03560.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g49960.1	expressed protein	Medtr7g035260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211136.1.S1_at	A	A1TS	POPTR_0013s07080	POPTR_0013s07080 (11)	scaffold_13:5796638-5796676(+) (11)	NA	NA	NA	AT3G03560.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g49960.1	expressed protein	Medtr7g035260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211137.1.S1_at	A	A1TS	POPTR_0013s07120	POPTR_0013s07120 (11)	scaffold_13:5856563-5857307(+) (11)	NA	P95245	Phospholipase C 3	AT3G03530.1	non-specific phospholipase C4 	LOC_Os03g63580.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.211138.1.S1_at	A	A1MS	POPTR_0013s07130	POPTR_0013s07130 (11)	scaffold_13:5857993-5858534(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT5G17580.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g022270.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.211140.1.S1_s_at	A	A1TS	POPTR_0013s07240	POPTR_0013s07240 (11)	scaffold_13:6000926-6001462(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140340.1	N-6 Adenine-specific DNA methylase; Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.211141.1.S1_at	A	A1TS	POPTR_0013s07250	POPTR_0013s07250 (9)	scaffold_13:6013949-6014473(+) (11)	NA	NA	NA	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211143.1.S1_at	A	A2TS	POPTR_0013s07280	POPTR_0013s07280 (11)//POPTR_0019s06030 (9)	scaffold_13:6052614-6052666(+) (11)//scaffold_19:6486101-6486150(-) (9)	NA	Q9P6P3	Serine/threonine-protein kinase ppk15	AT5G35980.1	yeast YAK1-related gene 1 	LOC_Os02g47410.2	"protein kinase, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211143.1.S1_s_at	A	A1TS	POPTR_0013s07280	POPTR_0013s07280 (11)	scaffold_13:6052302-6052623(+) (11)	POPTR_0019s06030 (7)	Q9P6P3	Serine/threonine-protein kinase ppk15	AT5G35980.1	yeast YAK1-related gene 1 	LOC_Os02g47410.2	"protein kinase, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211144.1.S1_at	A	A1TS	POPTR_0013s07310	POPTR_0013s07310 (11)	scaffold_13:6077545-6078119(-) (11)	NA	O81117	Cytochrome P450 94A1	AT2G27690.1	"cytochrome P450, family 94, subfamily C, polypeptide 1 "	LOC_Os01g63930.2	"cytochrome P450, putative, expressed"	Medtr4g072990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.211145.1.S1_at	A	A1TS	POPTR_0013s07320	POPTR_0013s07320 (11)	scaffold_13:6087564-6087792(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211146.1.S1_at	A	A1TS	POPTR_0013s07330	POPTR_0013s07330 (11)	scaffold_13:6109097-6109517(-) (11)	NA	Q66J74	Tuftelin-interacting protein 11	AT1G17070.1	GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain 	LOC_Os12g42140.1	"G-patch domain containing protein, putative, expressed"	Medtr7g076410.1	D111/G-patch 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.211147.1.S1_at	A	A1TS	POPTR_0013s07380	POPTR_0013s07380 (11)	scaffold_13:6156410-6156995(-) (11)	NA	Q42602	Cytochrome P450 89A2	AT1G64940.1	"cytochrome P450, family 87, subfamily A, polypeptide 6 "	LOC_Os10g37110.1	"transposon protein, putative, unclassified, expressed"	Medtr2g010350.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.211148.1.S1_at	A	A1TS	POPTR_0013s07480	POPTR_0013s07480 (11)	scaffold_13:6272876-6273161(-) (11)	NA	Q42438	Calcium-dependent protein kinase 8	AT5G19450.2	calcium-dependent protein kinase 19 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr7g110590.1	Protein kinase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211149.1.S1_at	A	A1TS	POPTR_0013s07490	POPTR_0013s07490 (11)	scaffold_13:6277816-6278491(-) (11)	NA	NA	NA	AT1G01320.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g23990.2	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.3	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211150.1.S1_at	A	A1TS	POPTR_0013s07520	POPTR_0013s07520 (11)	scaffold_13:6327446-6327615(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211151.1.S1_s_at	A	A1TS	POPTR_0013s07530	POPTR_0013s07530 (11)	scaffold_13:6339119-6343203(+) (11)	NA	Q0WQG8	GPCR-type G protein 2	AT4G27630.2	GPCR-type G protein 2 	LOC_Os04g51180.1	"GPR89A, putative, expressed"	Medtr5g005620.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211152.1.S1_at	A	A1TS	POPTR_0013s07590	POPTR_0013s07590 (11)	scaffold_13:6415776-6415958(-) (11)	NA	NA	NA	AT5G62030.1	diphthamide synthesis DPH2 family protein 	LOC_Os02g57050.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr5g008080.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211153.1.S1_at	A	A1TS	POPTR_0013s07600	POPTR_0013s07600 (11)	scaffold_13:6427516-6428044(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211154.1.S1_at	A	A1TS	POPTR_0013s07650	POPTR_0013s07650 (11)	scaffold_13:6489487-6489659(+) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT5G16730.1	Plant protein of unknown function (DUF827) 	LOC_Os05g02820.1	"protein transport protein-related, putative, expressed"	Medtr4g107430.1	"protein transport protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211154.1.S1_x_at	A	A1TS	POPTR_0013s07650	POPTR_0013s07650 (11)	scaffold_13:6489179-6489658(+) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT5G16730.1	Plant protein of unknown function (DUF827) 	LOC_Os05g02820.1	"protein transport protein-related, putative, expressed"	Medtr4g107430.1	"protein transport protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211156.1.S1_at	A	A1MS	POPTR_0013s07690	POPTR_0013s07690 (10)	scaffold_13:6534367-6535020(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g50208.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211157.1.S1_at	A	A1TS	POPTR_0013s07730	POPTR_0013s07730 (10)	scaffold_13:6572721-6573208(-) (10)	NA	Q84T61	Heat stress transcription factor A-1	AT5G16820.2	heat shock factor 3 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g107610.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211159.1.S1_at	A	A1TS	POPTR_0013s07780	POPTR_0013s07780 (11)	scaffold_13:6618276-6618965(+) (11)	NA	NA	NA	AT3G02970.1	EXORDIUM like 6 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g120640.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211161.1.S1_at	A	A1TS	POPTR_0001s43950	POPTR_0001s43950 (11)	scaffold_1:44360765-44361961(-) (11)	NA	Q8GXT3	Transcription factor bHLH123	AT3G20640.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g42180.1	"ethylene-responsive protein related, putative"	Medtr2g096070.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211162.1.S1_at	A	A1TS	POPTR_0001s43980	POPTR_0001s43980 (11)	scaffold_1:44420239-44420806(+) (11)	NA	Q64LD2	WD repeat-containing protein 25	AT5G54520.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g21490.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086930.1	"Pre-mRNA-processing factor 17, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211163.1.S1_at	A	A1TS	POPTR_0001s43990	POPTR_0001s43990 (11)	scaffold_1:44436499-44436972(+) (11)	NA	Q9LSQ4	Indole-3-acetic acid-amido synthetase GH3.6	AT5G54510.1	Auxin-responsive GH3 family protein 	LOC_Os01g57610.1	"OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr2g096120.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211163.1.S1_s_at	A	A1TS	POPTR_0001s43990	POPTR_0001s43990 (11)	scaffold_1:44436379-44436953(+) (11)	NA	Q9LSQ4	Indole-3-acetic acid-amido synthetase GH3.6	AT5G54510.1	Auxin-responsive GH3 family protein 	LOC_Os01g57610.1	"OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr2g096120.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211165.1.S1_at	A	A1TS	POPTR_0001s44010	POPTR_0001s44010 (11)	scaffold_1:44487049-44487335(+) (11)	NA	NA	NA	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	NA	NA	Medtr4g129310.1	Lipolytic enzyme 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211166.1.S1_at	A	A1TS	POPTR_0001s44040	POPTR_0001s44040 (11)	scaffold_1:44499401-44499915(-) (11)	NA	Q9FIU7	Putative beta-glucosidase 41	AT5G54570.1	beta glucosidase 41 	LOC_Os06g46940.2	"Os6bglu25 - beta-glucosidase homologue, similar to Os3bglu6, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.211166.1.S1_s_at	A	A1TS	POPTR_0001s44040	POPTR_0001s44040 (11)	scaffold_1:44499567-44500321(-) (11)	NA	Q9FIU7	Putative beta-glucosidase 41	AT5G54570.1	beta glucosidase 41 	LOC_Os06g46940.2	"Os6bglu25 - beta-glucosidase homologue, similar to Os3bglu6, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.211167.1.S1_at	A	A1TS	POPTR_0001s44100	POPTR_0001s44100 (11)	scaffold_1:44576822-44578764(+) (11)	NA	Q9LFV3	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730	AT5G54590.2	Protein kinase superfamily protein 	LOC_Os08g04420.2	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr2g096390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211168.1.S1_at	A	A1TS	POPTR_0001s44100	POPTR_0001s44100 (11)	scaffold_1:44578922-44579872(+) (11)	NA	Q9LFV3	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730	AT5G54590.2	Protein kinase superfamily protein 	LOC_Os08g04420.2	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr2g096390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211169.1.S1_at	A	A1TS	POPTR_0001s44120	POPTR_0001s44120 (11)	scaffold_1:44590562-44591433(+) (11)	NA	P51110	Dihydroflavonol-4-reductase	AT4G27250.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g46920.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081220.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211170.1.S1_s_at	A	A1TS	POPTR_0001s44130	POPTR_0001s44130 (11)	scaffold_1:44594631-44595010(-) (11)	NA	NA	NA	AT5G54630.1	zinc finger protein-related 	LOC_Os01g57650.1	"ZOS1-12 - C2H2 zinc finger protein, expressed"	Medtr4g111260.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211170.1.S1_x_at	A	A1TS	POPTR_0001s44130	POPTR_0001s44130 (11)	scaffold_1:44594579-44595150(-) (11)	NA	NA	NA	AT5G54630.1	zinc finger protein-related 	LOC_Os01g57650.1	"ZOS1-12 - C2H2 zinc finger protein, expressed"	Medtr4g111260.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211171.1.S1_at	A	A1TS	POPTR_0001s44150	POPTR_0001s44150 (11)	scaffold_1:44628864-44629353(-) (11)	NA	P0CB23	Uncharacterized protein At4g38062	AT4G38070.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g48490.1	"centromere protein, putative, expressed"	Medtr2g009630.1	"Centromere protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211172.1.S1_at	A	A1TS	POPTR_0001s44180	POPTR_0001s44180 (11)	scaffold_1:44645041-44645432(-) (11)	NA	Q94B77	Formin-like protein 5	AT5G54650.2	formin homology5 	LOC_Os07g36150.1	"formin-like protein 3 precursor, putative, expressed"	Medtr4g111250.1	Pyridoxal-dependent decarboxylase; Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211173.1.S1_at	A	A1TS	POPTR_0001s44240	POPTR_0001s44240 (11)	scaffold_1:44685710-44686226(+) (11)	NA	NA	NA	AT3G20680.1	Domain of unknown function (DUF1995) 	LOC_Os05g42100.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211174.1.S1_at	A	A1TS	POPTR_0001s44260	POPTR_0001s44260 (11)	scaffold_1:44705695-44706424(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211175.1.S1_at	A	A1TS	POPTR_0001s44270	POPTR_0001s44270 (11)	scaffold_1:44710990-44711408(-) (11)	NA	Q8CCN5	Breast carcinoma-amplified sequence 3 homolog	AT5G54730.1	homolog of yeast autophagy 18 (ATG18) F 	LOC_Os01g57720.2	expressed protein	Medtr2g096860.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211176.1.S1_at	A	A1TS	POPTR_0001s44280	POPTR_0001s44280 (11)	scaffold_1:44741674-44743214(+) (11)	NA	A2RSJ4	UHRF1-binding protein 1-like	AT3G20720.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os04g53670.1	expressed protein	Medtr4g111120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211177.1.S1_at	A	A1TS	POPTR_0001s44280	POPTR_0001s44280 (11)	scaffold_1:44747361-44748330(+) (11)	NA	A2RSJ4	UHRF1-binding protein 1-like	AT3G20720.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os04g53670.1	expressed protein	Medtr4g111120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211178.1.S1_at	A	A1TS	POPTR_0001s44290	POPTR_0001s44290 (11)	scaffold_1:44750964-44751831(-) (11)	NA	Q9LT47	Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM	AT3G20740.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g04270.3	"WD domain, G-beta repeat domain containing protein, expressed"	AC234703_19.1	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211178.1.S1_s_at	A	A1TS	POPTR_0001s44290	POPTR_0001s44290 (11)	scaffold_1:44750885-44752426(-) (11)	NA	Q9LT47	Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM	AT3G20740.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g04270.3	"WD domain, G-beta repeat domain containing protein, expressed"	AC234703_19.1	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211179.1.S1_at	A	A1TS	POPTR_0001s44310	POPTR_0001s44310 (11)	scaffold_1:44761189-44762184(-) (11)	NA	Q6NQ81	"Pentatricopeptide repeat-containing protein At4g04790, mitochondrial"	AT4G04790.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g03970.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g111010.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211180.1.S1_at	A	A1TS	POPTR_0001s44320	POPTR_0001s44320 (11)	scaffold_1:44780803-44781527(+) (11)	NA	Q9LHD1	ABC transporter B family member 15	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.211181.1.S1_at	A	A1TS	POPTR_0001s44330	POPTR_0001s44330 (11)	scaffold_1:44783436-44783879(+) (11)	NA	Q9LHD1	ABC transporter B family member 15	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211182.1.S1_s_at	A	A1TS	POPTR_0001s44340	POPTR_0001s44340 (11)	scaffold_1:44784166-44784502(+) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28390.1	P-glycoprotein 18 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009710.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211183.1.S1_at	A	A1TS	POPTR_0001s44350	POPTR_0001s44350 (11)	scaffold_1:44788787-44789104(+) (11)	NA	Q9LSJ8	ABC transporter B family member 16	AT3G28360.1	P-glycoprotein 16 	LOC_Os04g40570.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211184.1.S1_at	A	A1TS	POPTR_0001s44390	POPTR_0001s44390 (10)	scaffold_1:44820820-44821569(-) (10)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT4G21200.1	gibberellin 2-oxidase 8 	LOC_Os02g41954.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr7g047260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.211185.1.S1_at	A	A1TS	POPTR_0001s44410	POPTR_0001s44410 (10)	scaffold_1:44833522-44833755(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g097060.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211187.1.S1_at	A	A1TS	POPTR_0001s44460	POPTR_0001s44460 (9)	scaffold_1:44877775-44878376(+) (11)	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.2	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211188.1.S1_at	A	A1TS	POPTR_0001s44470	POPTR_0001s44470 (11)	scaffold_1:44880011-44880419(-) (11)	NA	B3QLP5	Tetraacyldisaccharide 4'-kinase	AT3G20480.1	tetraacyldisaccharide 4'-kinase family protein 	LOC_Os07g01200.1	"tetraacyldisaccharide 4-kinase, putative, expressed"	Medtr3g069100.1	Tetraacyldisaccharide-1-P 4-kinase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0009245|lipid A biosynthetic process	GO:0009029|tetraacyldisaccharide 4'-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211189.1.S1_at	A	A1TS	POPTR_0001s44490	POPTR_0001s44490 (11)	scaffold_1:44888410-44888762(+) (11)	NA	Q9LJU0	COBRA-like protein 10	AT3G20580.1	COBRA-like protein 10 precursor 	LOC_Os06g47110.1	"COBRA-like protein precursor, putative, expressed"	Medtr2g097170.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211190.1.S1_at	A	A1TS	POPTR_0001s44500	POPTR_0001s44500 (11)	scaffold_1:44892935-44895870(-) (11)	NA	Q9CXF4	TBC1 domain family member 15	AT4G27100.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os11g37690.1	"TBC domain containing protein, expressed"	Medtr2g097180.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.211191.1.S1_at	A	A1TS	POPTR_0001s44540	POPTR_0001s44540 (11)	scaffold_1:44984193-44985520(+) (11)	NA	Q93V99	Homeobox-leucine zipper protein PROTODERMAL FACTOR 2	AT4G04890.1	protodermal factor 2 	LOC_Os08g08820.2	"homeobox and START domains containing protein, putative, expressed"	Medtr2g103900.2	Lipid-binding START; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211192.1.S1_at	A	A1TS	POPTR_0001s44545	POPTR_0001s44545 (11)	scaffold_1:44989714-44990014(-) (11)	NA	NA	NA	AT3G15160.1	unknown protein; Has 266 Blast hits to 264 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os04g53530.1	expressed protein	Medtr4g110580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211193.1.S1_x_at	A	A1TS	POPTR_0001s44570	POPTR_0001s44570 (10)	scaffold_1:45025244-45025579(-) (10)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211194.1.S1_x_at	A	A1TS	POPTR_0001s44590	POPTR_0001s44590 (11)	scaffold_1:45048516-45048943(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr3g076270.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211195.1.S1_at	A	A1TS	POPTR_0001s44600	POPTR_0001s44600 (11)	scaffold_1:45069139-45069406(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211196.1.S1_at	A	A1TS	POPTR_0001s44610	POPTR_0001s44610 (11)	scaffold_1:45078373-45080187(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.211196.1.S1_x_at	A	A1TS	POPTR_0001s44610	POPTR_0001s44610 (11)	scaffold_1:45078374-45080187(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.211197.1.S1_at	A	A1TS	POPTR_0001s44640	POPTR_0001s44640 (10)	scaffold_1:45095264-45098301(+) (11)	NA	Q8W4D8	FHA domain-containing protein DDL	AT3G20550.1	SMAD/FHA domain-containing protein  	LOC_Os05g46780.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g064260.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211198.1.S1_at	A	A1TS	POPTR_0001s44650	POPTR_0001s44650 (11)	scaffold_1:45100679-45102029(+) (11)	NA	Q9M1Q1	F-box protein At3g62230	AT3G62230.1	F-box family protein 	LOC_Os07g36890.1	OsFBX253 - F-box domain containing protein	Medtr2g055350.1	"Putative F-box/LRR-repeat protein At1g56400, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211199.1.S1_at	A	A1TS	POPTR_0001s44660	POPTR_0001s44660 (11)	scaffold_1:45102647-45103011(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211200.1.S1_at	A	A1TS	POPTR_0001s44670	POPTR_0001s44670 (11)	scaffold_1:45106518-45107181(-) (11)	NA	P87027	Septum-promoting GTP-binding protein 1	AT5G54840.1	Ras-related small GTP-binding family protein 	LOC_Os07g33850.2	"ras-related protein, putative, expressed"	Medtr5g099390.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.211201.1.S1_at	A	A1TS	POPTR_0001s44700	POPTR_0001s44700 (11)	scaffold_1:45134057-45134501(-) (11)	NA	NA	NA	AT5G54850.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr5g099420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211202.1.S1_at	A	A1TS	POPTR_0001s44730	POPTR_0001s44730 (10)	scaffold_1:45157073-45157507(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211203.1.S1_at	A	A1TS	POPTR_0001s44740	POPTR_0001s44740 (10)	scaffold_1:45159638-45160586(-) (10)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT3G20530.1	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr5g099440.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211204.1.S1_at	A	A2TS	POPTR_0001s44750	POPTR_0001s44750 (11)//POPTR_0171s00200 (9)	scaffold_1:45166299-45166807(+) (11)//scaffold_171:1310-1818(+) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os03g36760.2	expressed protein	Medtr3g067470.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211205.1.S1_s_at	A	A3TS	POPTR_0001s44760	POPTR_0001s44760 (11)//POPTR_0171s00220 (11)//POPTR_0171s00210 (11)	scaffold_1:45171744-45171936(-) (11)//scaffold_171:6684-6876(-) (11)//scaffold_171:13861-14053(-) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os03g36760.2	expressed protein	Medtr3g067690.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211206.1.S1_at	A	A1TS	POPTR_0171s00220	POPTR_0171s00220 (11)	scaffold_171:5648-13042(-) (11)	POPTR_0171s00210 (6)	NA	NA	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os03g36760.2	expressed protein	Medtr5g072480.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211207.1.S1_at	A	A2TS	POPTR_0001s44770	POPTR_0171s00230 (11)//POPTR_0001s44770 (11)	scaffold_1:45176193-45176645(+) (11)//scaffold_171:19183-19635(+) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os03g36760.2	expressed protein	Medtr3g067470.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211208.1.S1_at	A	A1TS	POPTR_0001s44780	POPTR_0001s44780 (11)	scaffold_1:45179924-45180093(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211210.1.S1_at	A	A1TS	POPTR_0001s44800	POPTR_0001s44800 (11)	scaffold_1:45204277-45205407(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211212.1.S1_s_at	A	A1TS	POPTR_0001s44810	POPTR_0001s44810 (10)	scaffold_1:45208166-45208199(+) (10)//scaffold_1:45211102-45211135(+) (10)	NA	NA	NA	AT5G18510.1	"Aminotransferase-like, plant mobile domain family protein "	NA	NA	Medtr3g067720.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211212.1.S1_x_at	A	A1TS	POPTR_0001s44810	POPTR_0001s44810 (9)	scaffold_1:45197254-45211213(+) (11)	NA	NA	NA	AT5G18510.1	"Aminotransferase-like, plant mobile domain family protein "	NA	NA	Medtr3g067720.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211213.1.S1_at	A	A1TS	POPTR_0001s44840	POPTR_0001s44840 (11)	scaffold_1:45225556-45226253(-) (11)	NA	NA	NA	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os12g15450.1	expressed protein	Medtr3g067850.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211214.1.S1_at	A	A1MS	POPTR_0001s44860	POPTR_0001s44860 (10)	scaffold_1:45247646-45248658(+) (10)	NA	NA	NA	AT5G54860.1	Major facilitator superfamily protein 	LOC_Os01g14100.1	"BT1 family protein, putative, expressed"	Medtr3g068230.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211215.1.S1_at	A	A1TS	POPTR_0001s44890	POPTR_0001s44890 (11)	scaffold_1:45261102-45261219(+) (11)	NA	NA	NA	AT4G27020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g58114.1	expressed protein	Medtr5g099460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211216.1.S1_at	A	A1MS	POPTR_0001s44900	POPTR_0001s44900 (9)	scaffold_1:45261677-45262387(-) (9)	NA	Q50EK1	Cytochrome P450 716B1	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211217.1.S1_at	A	A1MS	POPTR_0001s44900	POPTR_0001s44900 (9)	scaffold_1:45263471-45264158(-) (10)	NA	Q50EK1	Cytochrome P450 716B1	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211218.1.S1_at	A	A1TS	POPTR_0001s44920	POPTR_0001s44920 (11)	scaffold_1:45273323-45273565(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211220.1.S1_at	A	A1TS	POPTR_0001s44950	POPTR_0001s44950 (11)	scaffold_1:45284785-45285337(+) (11)	NA	NA	NA	AT5G54880.1	DTW domain-containing protein 	LOC_Os03g37100.1	"DTW domain containing protein, putative, expressed"	Medtr5g099570.1	DTW 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211221.1.S1_at	A	A1TS	POPTR_0001s44970	POPTR_0001s44970 (11)	scaffold_1:45290051-45290193(-) (11)	NA	Q9LJU7	Purple acid phosphatase 18	AT3G20500.1	purple acid phosphatase 18 	LOC_Os03g37130.1	"ATPAP18/PAP18, putative, expressed"	Medtr3g068290.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.211222.1.S1_s_at	A	A1TS	POPTR_0001s44980	POPTR_0001s44980 (11)	scaffold_1:45297427-45298183(-) (11)	NA	O60287	Nucleolar pre-ribosomal-associated protein 1	AT4G27010.1	CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g53380.1	expressed protein	Medtr3g068640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211223.1.S1_at	A	A1TS	POPTR_0001s44980	POPTR_0001s44980 (11)	scaffold_1:45302195-45302746(-) (11)	NA	O60287	Nucleolar pre-ribosomal-associated protein 1	AT4G27010.1	CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g53380.1	expressed protein	Medtr3g068640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211224.1.S1_at	A	A1TS	POPTR_0001s44980	POPTR_0001s44980 (9)	scaffold_1:45309033-45309515(-) (11)	NA	O60287	Nucleolar pre-ribosomal-associated protein 1	AT4G27010.1	CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g53380.1	expressed protein	Medtr3g068640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211225.1.S1_at	A	A2TS	POPTR_0001s45010	POPTR_0001s45010 (11)//POPTR_0001s43620 (10)	scaffold_1:43820478-43821824(-) (10)//scaffold_1:45325628-45326894(-) (11)	NA	Q9FFT9	DEAD-box ATP-dependent RNA helicase 32	AT5G54910.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os07g33340.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g099850.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.211226.1.S1_at	A	A1TS	POPTR_0001s45020	POPTR_0001s45020 (9)	scaffold_1:45337112-45339161(+) (9)	NA	NA	NA	AT5G54920.2	unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g53450.1	expressed protein	Medtr3g068300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211228.1.S1_at	A	A1TS	POPTR_0001s42520	POPTR_0001s42520 (11)	scaffold_1:42504391-42504911(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211228.1.S1_x_at	A	A1TS	POPTR_0001s42520	POPTR_0001s42520 (11)	scaffold_1:42504391-42504909(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211239.1.S1_at	A	A1TS	POPTR_0090s00210	POPTR_0090s00210 (11)	scaffold_90:7746-8114(+) (11)	NA	NA	NA	AT1G71350.1	eukaryotic translation initiation factor SUI1 family protein 	LOC_Os02g35160.1	"ligatin, putative, expressed"	Medtr4g031820.1	Translation initiation factor SUI1; PUA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211240.1.S1_at	A	A1TS	POPTR_0090s00220	POPTR_0090s00220 (11)	scaffold_90:21676-22062(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211243.1.S1_at	A	A1TS	POPTR_0013s08970	POPTR_0013s08970 (11)	scaffold_13:8501050-8501388(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g067470.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211243.1.S1_s_at	A	A3TS	POPTR_0011s01240	POPTR_0013s08970 (11)//POPTR_0017s09350 (11)//POPTR_0011s01240 (11)	scaffold_11:748518-748913(-) (11)//scaffold_13:8501014-8501409(-) (11)//scaffold_17:7964591-7964986(+) (11)//scaffold_8:12837446-12837843(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g39730.1	"retrotransposon protein, putative, unclassified"	Medtr3g067470.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211243.1.S1_x_at	A	A1TS	POPTR_0013s08970	POPTR_0013s08970 (11)	scaffold_13:8500971-8501388(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g067470.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211244.1.S1_at	A	A1TS	POPTR_0013s09010	POPTR_0013s09010 (11)	scaffold_13:8576477-8577182(-) (11)	NA	NA	NA	AT2G17270.1	phosphate transporter 3;3 	NA	NA	Medtr5g024710.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211245.1.S1_at	A	A1TS	POPTR_0013s09030	POPTR_0013s09030 (11)	scaffold_13:8595807-8596314(+) (11)	NA	O04933	Sucrose-phosphate synthase 2	AT4G10120.2	Sucrose-phosphate synthase family protein 	LOC_Os01g69030.4	"sucrose-phosphate synthase, putative, expressed"	Medtr5g098550.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.211246.1.S1_at	A	A1TS	POPTR_0013s09040	POPTR_0013s09040 (11)	scaffold_13:8598666-8605414(-) (11)	NA	NA	NA	AT1G33500.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g23140.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211247.1.S1_at	A	A1TS	POPTR_0013s09060	POPTR_0013s09060 (11)	scaffold_13:8610452-8613343(+) (11)	NA	NA	NA	AT1G71340.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os11g12800.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.211248.1.S1_at	A	A1TS	POPTR_0013s09070	POPTR_0013s09070 (11)	scaffold_13:8624442-8624891(+) (11)	NA	NA	NA	AT1G33490.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10140.1); Has 88 Blast hits to 88 proteins in 29 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os05g01510.2	"cytoplasmic membrane protein, putative, expressed"	Medtr4g031680.1	"cytoplasmic membrane protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211249.1.S1_s_at	A	A1TS	POPTR_0013s09100	POPTR_0013s09100 (11)	scaffold_13:8650403-8651342(-) (11)	NA	Q96EY9	tRNA-specific adenosine deaminase-like protein 3	AT5G24670.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os09g04210.3	"hydrolase/ zinc ion binding protein, putative, expressed"	Medtr4g159340.1	"CMP/dCMP deaminase, zinc-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211250.1.S1_at	A	A1TS	POPTR_0013s09150	POPTR_0013s09150 (11)	scaffold_13:8705550-8706458(-) (11)	NA	NA	NA	AT5G55830.1	Concanavalin A-like lectin protein kinase family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211251.1.S1_at	A	A1MS	POPTR_0013s09170	POPTR_0013s09170 (11)	scaffold_13:8741161-8741524(+) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.2	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211252.1.S1_at	A	A1TS	POPTR_0013s09180	POPTR_0013s09180 (11)	scaffold_13:8744941-8746233(-) (11)	NA	Q97ZH0	"N(2),N(2)-dimethylguanosine tRNA methyltransferase"	AT3G56330.1	"N2,N2-dimethylguanosine tRNA methyltransferase "	LOC_Os05g25880.1	"N-dimethylguanosine tRNA methyltransferase, putative, expressed"	NA	NA	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004809|tRNA (guanine-N2-)-methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.211253.1.S1_at	A	A1MS	POPTR_0013s09190	POPTR_0013s09190 (9)	scaffold_13:8760164-8760259(-) (9)	NA	Q8IYD1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	AT1G18070.2	Translation elongation factor EF1A/initiation factor IF2gamma family protein 	LOC_Os04g20220.1	"elongation factor Tu, putative, expressed"	Medtr4g155550.1	"Translation factor; EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.211253.1.S1_x_at	A	A1MS	POPTR_0013s09190	POPTR_0013s09190 (10)	scaffold_13:8758239-8760256(-) (10)	NA	Q8IYD1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	AT1G18070.2	Translation elongation factor EF1A/initiation factor IF2gamma family protein 	LOC_Os04g20220.1	"elongation factor Tu, putative, expressed"	Medtr4g155550.1	"Translation factor; EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.211255.1.S1_at	A	A1MA	POPTR_0013s09220	POPTR_0013s09220 (11)	scaffold_13:8842701-8843106(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211257.1.S1_at	A	A1TS	POPTR_0013s09230	POPTR_0013s09230 (11)	scaffold_13:8851823-8852380(+) (11)	NA	Q9C6J3	Putative F-box protein At1g50870	AT1G50870.1	F-box and associated interaction domains-containing protein 	LOC_Os01g45020.2	"F-box protein interaction domain containing protein, expressed"	Medtr4g024270.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211258.1.S1_at	A	A1TS	POPTR_0013s09240	POPTR_0013s09240 (11)	scaffold_13:8881247-8882801(+) (11)	NA	NA	NA	AT3G10840.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g02589.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g123630.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211259.1.S1_s_at	A	A1TS	POPTR_0013s09250	POPTR_0013s09250 (11)	scaffold_13:8895771-8896591(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211261.1.S1_at	A	A1TS	POPTR_0013s09280	POPTR_0013s09280 (10)	scaffold_13:8926033-8926468(-) (10)	NA	Q9SV87	Protein BEARSKIN1	AT4G10350.1	NAC domain containing protein 70 	LOC_Os06g04090.1	"no apical meristem protein, putative, expressed"	Medtr4g041220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211262.1.S1_at	A	A1TS	POPTR_0013s09290	POPTR_0013s09290 (10)	scaffold_13:8944873-8947735(+) (11)	NA	NA	NA	AT3G19770.1	Vacuolar sorting protein 9 (VPS9) domain 	LOC_Os03g62580.2	"vacuolar sorting protein, putative, expressed"	Medtr3g010530.1	Vacuolar sorting protein 9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211263.1.S1_at	A	A1MS	POPTR_0013s09290	POPTR_0013s09290 (11)	scaffold_13:8949694-8950259(+) (11)	NA	NA	NA	AT3G19770.1	Vacuolar sorting protein 9 (VPS9) domain 	LOC_Os03g62580.2	"vacuolar sorting protein, putative, expressed"	Medtr3g010530.1	Vacuolar sorting protein 9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211264.1.S1_at	A	A1TS	POPTR_0013s09300	POPTR_0013s09300 (11)	scaffold_13:8950906-8951415(-) (11)	NA	Q9C810	PHD finger protein At1g33420	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g65600.1	"PHD-finger domain containing protein, putative, expressed"	Medtr4g041260.1	"Protein of unknown function UPF0054; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211265.1.S1_at	A	A1TS	POPTR_0013s09310	POPTR_0013s09310 (11)	scaffold_13:8964106-8965169(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g21270.1	expressed protein	Medtr3g121880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211266.1.S1_at	A	A1MS	POPTR_0013s09320	POPTR_0013s09320 (11)	scaffold_13:8984054-8984104(-) (11)	POPTR_0019s09250 (6)	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211268.1.S1_at	A	A2TS	POPTR_0013s09320	POPTR_0013s09320 (11)//POPTR_1298s00200 (11)	scaffold_1298:5939-6052(-) (11)//scaffold_13:8984414-8984527(-) (11)	NA	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211268.1.S1_s_at	A	A3TS	POPTR_0013s09320	POPTR_0013s09320 (11)//POPTR_1298s00200 (11)//POPTR_0019s09250 (11)	scaffold_1298:5786-5874(-) (11)//scaffold_13:8984261-8984349(-) (11)//scaffold_19:10810743-10810831(-) (11)	NA	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211268.1.S1_x_at	A	A2TS	POPTR_0013s09320	POPTR_0013s09320 (11)//POPTR_1298s00200 (10)	scaffold_1298:5420-6052(-) (11)//scaffold_13:8983941-8984527(-) (11)	NA	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211270.1.S1_at	A	A1TS	POPTR_0013s09380	POPTR_0013s09380 (9)	scaffold_13:9073916-9074547(-) (11)	NA	NA	NA	AT1G08580.1	unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211271.1.S1_at	A	A1TS	POPTR_0013s09390	POPTR_0013s09390 (11)	scaffold_13:9080595-9080965(+) (11)	NA	NA	NA	AT2G40630.1	Uncharacterised conserved protein (UCP030365) 	LOC_Os02g03940.1	expressed protein	Medtr1g008510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211272.1.S1_at	A	A1TS	POPTR_0013s09400	POPTR_0013s09400 (9)	scaffold_13:9103625-9103740(-) (9)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT3G56370.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g080410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211273.1.S1_at	A	A1TS	POPTR_0013s09410	POPTR_0013s09410 (11)	scaffold_13:9158242-9160196(+) (11)	NA	C4XLT6	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	AT2G40690.1	NAD-dependent glycerol-3-phosphate dehydrogenase family protein 	LOC_Os07g12640.1	"glycerol-3-phosphate dehydrogenase, putative, expressed"	Medtr5g076490.1	"NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal "	GO:0044282|small molecule catabolic process||GO:0046168|glycerol-3-phosphate catabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	"GO:0051287|NAD or NADH binding||GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"""	GO:0005737|cytoplasm
PtpAffx.211274.1.S1_at	A	A1TS	POPTR_0013s09420	POPTR_0013s09420 (10)	scaffold_13:9184808-9186109(+) (10)	NA	Q38997	SNF1-related protein kinase catalytic subunit alpha KIN10	AT3G01090.2	SNF1 kinase homolog 10 	LOC_Os05g45420.3	"CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g092160.1	"Ubiquitin-associated; Tyrosine protein kinase; Kinase-associated, C-terminal; "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211276.1.S1_at	A	A1TS	POPTR_0013s09430	POPTR_0013s09430 (11)	scaffold_13:9204900-9205379(+) (11)	NA	Q7XJN6	Pentatricopeptide repeat-containing protein At2g40720	AT2G40720.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g10800.1	"pentatricopeptide, putative, expressed"	Medtr1g083640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211277.1.S1_at	A	A1TS	POPTR_0013s09460	POPTR_0013s09460 (11)	scaffold_13:9221521-9222089(+) (11)	NA	Q9SHB5	WRKY transcription factor 55	AT2G40740.1	WRKY DNA-binding protein 55 	LOC_Os05g25700.1	OsWRKY75 - Superfamily of TFs having WRKY and zinc finger domains	Medtr5g076570.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.211278.1.S1_at	A	A1TS	POPTR_0013s09470	POPTR_0013s09470 (11)	scaffold_13:9229895-9232407(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.211281.1.S1_at	A	A1TS	POPTR_0013s09610	POPTR_0013s09610 (11)	scaffold_13:9443236-9444535(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g47120.1	"region found in RelA/SpoT proteins containing protein, expressed"	Medtr5g007970.1	"ATP-dependent DNA ligase; Metal-dependent phosphohydrolase, HD region; TGS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211282.1.S1_at	A	A1TS	POPTR_0013s09620	POPTR_0013s09620 (11)	scaffold_13:9450602-9452619(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g47120.1	"region found in RelA/SpoT proteins containing protein, expressed"	Medtr5g007970.1	"ATP-dependent DNA ligase; Metal-dependent phosphohydrolase, HD region; TGS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211283.1.S1_at	A	A1TS	POPTR_0013s09640	POPTR_0013s09640 (10)	scaffold_13:9461021-9461582(-) (11)	NA	P43811	"Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase"	AT1G54130.1	RELA/SPOT homolog 3 	LOC_Os02g47120.1	"region found in RelA/SpoT proteins containing protein, expressed"	Medtr5g007970.1	"ATP-dependent DNA ligase; Metal-dependent phosphohydrolase, HD region; TGS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211284.1.S1_at	A	A1TS	POPTR_0013s09650	POPTR_0013s09650 (11)	scaffold_13:9464354-9465257(-) (11)	NA	Q49640	Probable GTP pyrophosphokinase	AT3G14050.1	RELA/SPOT homolog 2 	LOC_Os02g47120.1	"region found in RelA/SpoT proteins containing protein, expressed"	Medtr5g007970.1	"ATP-dependent DNA ligase; Metal-dependent phosphohydrolase, HD region; TGS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211286.1.S1_at	A	A1TS	POPTR_0013s09700	POPTR_0013s09700 (11)	scaffold_13:9564805-9565084(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211287.1.S1_at	A	A1TS	POPTR_0013s09710	POPTR_0013s09710 (11)	scaffold_13:9649378-9652358(-) (11)	NA	Q9DBY1	E3 ubiquitin-protein ligase synoviolin	AT3G16090.1	RING/U-box superfamily protein 	LOC_Os06g19680.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g007790.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211293.1.S1_at	A	A1TS	POPTR_0013s13660	POPTR_0013s13660 (11)	scaffold_13:14081923-14082272(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g33950.1	conserved hypothetical protein	Medtr5g025900.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211294.1.S1_at	A	A2TS	POPTR_0013s13690	POPTR_0013s13690 (11)//POPTR_0013s13830 (9)	scaffold_13:14128218-14128506(+) (11)//scaffold_13:14187448-14187787(-) (9)	NA	P16157	Ankyrin-1	AT1G03670.1	ankyrin repeat family protein 	LOC_Os07g34830.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211294.1.S1_x_at	A	A1TS	POPTR_0013s13690	POPTR_0013s13690 (10)	scaffold_13:14128183-14128506(+) (10)	POPTR_0013s13830 (8)	P16157	Ankyrin-1	AT1G03670.1	ankyrin repeat family protein 	LOC_Os07g34830.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211295.1.S1_at	A	A1TS	POPTR_0013s13720	POPTR_0013s13720 (11)	scaffold_13:14141941-14142515(+) (11)	POPTR_0013s13730 (7)	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G03670.1	ankyrin repeat family protein 	LOC_Os05g35310.1	"ankyrin repeat family protein, putative"	Medtr5g092930.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211296.1.S1_s_at	A	A2TS	POPTR_1669s00200	POPTR_1669s00200 (11)//POPTR_0013s13740 (10)	scaffold_13:14152371-14152917(+) (10)//scaffold_1669:67-613(-) (11)	NA	P16157	Ankyrin-1	AT1G03670.1	ankyrin repeat family protein 	LOC_Os07g34830.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211298.1.S1_s_at	A	A1TS	POPTR_0013s13790	POPTR_0013s13790 (11)	scaffold_13:14176084-14176710(-) (11)	NA	P80196	Intracellular ribonuclease LX	AT2G02990.1	ribonuclease 1 	LOC_Os08g33710.1	"ribonuclease T2 family domain containing protein, expressed"	Medtr5g044290.1	Ribonuclease T2 	NA	GO:0033897|ribonuclease T2 activity||GO:0003723|RNA binding	NA
PtpAffx.211299.1.S1_at	A	A1TS	POPTR_0013s13800	POPTR_0013s13800 (11)	scaffold_13:14179030-14181212(-) (11)	NA	NA	NA	AT2G20760.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211299.1.S1_s_at	A	A1TS	POPTR_0013s13800	POPTR_0013s13800 (11)	scaffold_13:14179302-14179692(-) (11)	NA	NA	NA	AT2G20760.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211300.1.S1_at	A	A1TS	POPTR_0013s13810	POPTR_0013s13810 (11)	scaffold_13:14181895-14182184(-) (11)	NA	Q38944	Probable steroid reductase DET2	AT2G38050.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os01g63260.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr6g041190.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.211301.1.S1_s_at	A	A2TS	POPTR_0013s13920	POPTR_0019s13330 (11)//POPTR_0013s13920 (11)	scaffold_13:14241850-14241956(-) (11)//scaffold_19:14263423-14263529(-) (11)	NA	Q9SKT1	Ethylene-responsive transcription factor ERF053	AT2G20880.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g42585.1	"AP2 domain containing protein, expressed"	Medtr5g071740.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.211302.1.S1_at	A	A1TS	POPTR_0013s13930	POPTR_0013s13930 (11)	scaffold_13:14255609-14256068(-) (11)	NA	Q54I39	IST1-like protein	AT2G14830.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os08g07830.1	"DUF292 domain containing protein, expressed"	Medtr4g047240.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211303.1.S1_at	A	A1TS	POPTR_0013s13940	POPTR_0013s13940 (11)	scaffold_13:14262885-14263384(-) (11)	NA	NA	NA	AT1G65690.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os08g23460.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g094840.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.211304.1.S1_at	A	A1TS	POPTR_0013s13960	POPTR_0013s13960 (11)	scaffold_13:14268544-14269813(-) (11)	NA	B9I666	"Lipoyl synthase 1, chloroplastic"	AT5G08415.1	Radical SAM superfamily protein 	LOC_Os05g43576.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.211304.1.S1_s_at	A	A2TS	POPTR_0013s13960	POPTR_0019s13380 (11)//POPTR_0013s13960 (11)	scaffold_13:14269015-14269629(-) (11)//scaffold_19:14291263-14292145(-) (11)	NA	B9I666	"Lipoyl synthase 1, chloroplastic"	AT5G08415.1	Radical SAM superfamily protein 	LOC_Os05g43576.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.211304.1.S1_x_at	A	A1TS	POPTR_0013s13960	POPTR_0013s13960 (11)	scaffold_13:14268545-14269813(-) (11)	NA	B9I666	"Lipoyl synthase 1, chloroplastic"	AT5G08415.1	Radical SAM superfamily protein 	LOC_Os05g43576.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.211305.1.S1_s_at	A	A2TS	POPTR_0013s13970	POPTR_0019s13390 (11)//POPTR_0013s13970 (11)	scaffold_13:14280201-14280284(+) (11)//scaffold_19:14299631-14299714(+) (11)	NA	Q8S8I4	Protein EPIDERMAL PATTERNING FACTOR 1	AT2G20875.1	epidermal patterning factor 1 	LOC_Os04g54490.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211305.1.S1_x_at	A	A1TS	POPTR_0013s13970	POPTR_0013s13970 (11)	scaffold_13:14280159-14280335(+) (11)	NA	Q8S8I4	Protein EPIDERMAL PATTERNING FACTOR 1	AT2G20875.1	epidermal patterning factor 1 	LOC_Os04g54490.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211306.1.S1_at	A	A1TS	POPTR_0013s13980	POPTR_0013s13980 (11)	scaffold_13:14287397-14289317(+) (11)	NA	Q54YW1	ELMO domain-containing protein A	AT1G03620.1	ELMO/CED-12 family protein 	LOC_Os04g01150.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g104420.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
PtpAffx.211307.1.S1_at	A	A1TS	POPTR_0438s00200	POPTR_0438s00200 (11)	scaffold_13:14291950-14292158(-) (11)//scaffold_438:110-318(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211308.1.S1_s_at	A	A2TS	POPTR_0013s13990	POPTR_0013s13990 (11)//POPTR_0013s14000 (11)	scaffold_13:14294870-14295520(+) (11)//scaffold_13:14296304-14304748(+) (11)	NA	Q9LEL6	(RS)-norcoclaurine 6-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os05g43930.1	"O-methyltransferase, putative, expressed"	Medtr4g047310.1	"Blue (type 1) copper domain; O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.211310.1.S1_at	A	A1TS	POPTR_0013s14060	POPTR_0013s14060 (11)	scaffold_13:14396199-14396723(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g56160.1	"kelch repeat protein, putative"	Medtr2g014450.1	Kelch repeat type 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211312.1.S1_at	A	A1TS	POPTR_0013s14110	POPTR_0013s14110 (11)	scaffold_13:14449224-14449726(+) (11)	NA	Q9C9U0	Pentatricopeptide repeat-containing protein At1g73710	AT1G73710.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g28900.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g085050.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211314.1.S1_at	A	A1TS	POPTR_0013s14160	POPTR_0013s14160 (11)	scaffold_13:14461371-14461892(+) (11)	NA	Q96HR8	H/ACA ribonucleoprotein complex non-core subunit NAF1	AT1G03530.1	nuclear assembly factor 1 	LOC_Os05g42300.1	"NAF1 domain containing protein, expressed"	AC229695_14.1	NAF1 AC229695.5 66875-62871 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0019843|rRNA binding	GO:0005732|small nucleolar ribonucleoprotein complex
PtpAffx.211315.1.S1_at	A	A1TS	POPTR_0013s14210	POPTR_0013s14210 (11)	scaffold_13:14507892-14508327(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g54370.1	expressed protein	AC229695_9.1	hypothetical protein AC229695.5 37404-34347 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211316.1.S1_at	A	A1TS	POPTR_0013s14230	POPTR_0013s14230 (11)	scaffold_13:14514208-14515057(-) (11)	NA	NA	NA	AT2G20815.1	Family of unknown function (DUF566)  	LOC_Os08g34320.1	expressed protein	Medtr8g102680.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211317.1.S1_s_at	A	A1TS	POPTR_0735s00210	POPTR_0735s00210 (11)	scaffold_735:5843-6304(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010460.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211318.1.S1_x_at	A	A1TS	POPTR_0735s00220	POPTR_0735s00220 (11)	scaffold_735:8467-8815(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os11g34090.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010460.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211319.1.S1_s_at	A	A2TS	POPTR_0013s14260	POPTR_1215s00210 (11)//POPTR_0013s14260 (11)	scaffold_1215:6496-6600(-) (11)//scaffold_13:14534186-14534290(-) (11)//scaffold_735:8470-8574(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211320.1.S1_at	A	A1MS	POPTR_0013s14270	POPTR_0013s14270 (11)	scaffold_13:14538643-14538685(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211320.1.S1_s_at	A	A1MS	POPTR_0013s14270	POPTR_0013s14270 (11)	scaffold_13:14538186-14538620(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211322.1.S1_at	A	A1MS	POPTR_0013s14270	POPTR_0013s14270 (11)	scaffold_13:14538791-14539644(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211323.1.S1_at	A	A1TS	POPTR_0013s14320	POPTR_0013s14320 (11)	scaffold_13:14549254-14549471(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211324.1.S1_at	A	A1TS	POPTR_0013s14340	POPTR_0013s14340 (11)	scaffold_13:14567158-14568179(+) (11)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT2G20800.1	NAD(P)H dehydrogenase B4 	LOC_Os05g26660.1	"NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.211325.1.S1_at	A	A1TS	POPTR_0013s14350	POPTR_0013s14350 (11)	scaffold_13:14568900-14569655(-) (11)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT2G20800.1	NAD(P)H dehydrogenase B4 	LOC_Os05g26660.1	"NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.211326.1.S1_at	A	A1MA	POPTR_0013s14470	POPTR_0013s14470 (11)	scaffold_13:14638446-14638732(+) (11)	NA	O75912	Diacylglycerol kinase iota	AT2G20900.2	diacylglycerol kinase 5 	LOC_Os04g54200.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.211327.1.S1_at	A	A1TS	POPTR_0013s14480	POPTR_0013s14480 (11)	scaffold_13:14655504-14656340(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT4G21440.1	MYB-like 102 	LOC_Os07g37210.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211328.1.S1_at	A	A1TS	POPTR_0013s14510	POPTR_0013s14510 (11)	scaffold_13:14673146-14674672(-) (11)	NA	NA	NA	AT4G05120.1	Major facilitator superfamily protein 	LOC_Os07g37110.1	"nucleoside transporter, putative, expressed"	Medtr2g103000.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211329.1.S1_at	A	A1TS	POPTR_0013s14510	POPTR_0013s14510 (11)	scaffold_13:14675565-14675801(-) (11)	NA	NA	NA	AT4G05120.1	Major facilitator superfamily protein 	LOC_Os07g37110.1	"nucleoside transporter, putative, expressed"	Medtr2g103000.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211332.1.S1_at	A	A1TS	POPTR_0013s14580	POPTR_0013s14580 (11)	scaffold_13:14749197-14750767(+) (11)	NA	NA	NA	AT1G15030.1	Protein of unknown function (DUF789) 	LOC_Os04g57870.1	expressed protein	Medtr6g089670.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211336.1.S1_at	A	A1MS	POPTR_0013s14630	POPTR_0013s14630 (11)	scaffold_13:14793936-14794127(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211337.1.S1_at	A	A1TS	POPTR_0013s14680	POPTR_0013s14680 (10)	scaffold_13:14827242-14827628(-) (10)	NA	NA	NA	AT4G27310.1	B-box type zinc finger family protein 	LOC_Os08g08120.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g103200.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.211339.1.S1_at	A	A1MS	POPTR_0013s14690	POPTR_0013s14690 (10)	scaffold_13:14837103-14838220(+) (10)	NA	Q9ZR08	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	AT4G03230.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g103220.1	"ATP-dependent helicase, DEAD-box; Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211340.1.S1_at	A	A1TS	POPTR_0013s14740	POPTR_0013s14740 (11)	scaffold_13:14888333-14888812(+) (11)	NA	Q9LSQ4	Indole-3-acetic acid-amido synthetase GH3.6	AT5G54510.1	Auxin-responsive GH3 family protein 	LOC_Os01g57610.1	"OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr2g096120.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211341.1.S1_at	A	A1TS	POPTR_0013s14750	POPTR_0013s14750 (11)	scaffold_13:14896262-14897048(-) (11)	NA	Q9ZR09	Putative F-box/FBD/LRR-repeat protein At4g03220	AT4G03220.1	Protein with RNI-like/FBD-like domains 	LOC_Os07g18510.1	"OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed"	AC229702_9.1	Rhodopsin-like GPCR superfamily; Cyclin-like F-box; FBD; AC229702.6 88103-90335 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211342.1.S1_at	A	A1MS	POPTR_0013s14780	POPTR_0013s14780 (11)	scaffold_13:14910089-14910167(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211342.1.S1_x_at	A	A1MS	POPTR_0013s14780	POPTR_0013s14780 (11)	scaffold_13:14903169-14910167(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211343.1.S1_at	A	A1TS	POPTR_0013s14800	POPTR_0013s14800 (11)	scaffold_13:14919773-14920571(-) (11)	NA	Q9SS94	Cell division control protein 48 homolog C	AT3G01610.1	cell division cycle 48C 	LOC_Os06g01980.1	"AAA family ATPase, putative, expressed"	Medtr2g007090.1	"Peptidase M14, carboxypeptidase A; AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.211344.1.S1_at	A	A1TS	POPTR_0013s14810	POPTR_0013s14810 (10)	scaffold_13:14927298-14927816(-) (10)	NA	Q9FJC1	Putative FBD-associated F-box protein At5g53630	AT5G53635.1	F-box/RNI-like/FBD-like domains-containing protein 	LOC_Os07g06500.1	"OsFBL34 - F-box domain and LRR containing protein, expressed"	AC229702_9.1	Rhodopsin-like GPCR superfamily; Cyclin-like F-box; FBD; AC229702.6 88103-90335 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211345.1.S1_at	A	A1TS	POPTR_0013s14820	POPTR_0013s14820 (11)	scaffold_13:14934223-14934786(-) (11)	NA	Q9LTV8	Pentatricopeptide repeat-containing protein At3g12770	AT3G12770.1	mitochondrial editing factor  22 	LOC_Os06g02200.1	"pentatricopeptide, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211346.1.S1_at	A	A1TS	POPTR_0013s14840	POPTR_0013s14840 (11)	scaffold_13:14939611-14940118(-) (11)	NA	Q9FL53	Fasciclin-like arabinogalactan protein 21	AT5G06920.1	FASCICLIN-like arabinogalactan protein 21 precursor 	NA	NA	Medtr2g103270.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211349.1.S1_at	A	A1TS	POPTR_0013s14920	POPTR_0013s14920 (11)	scaffold_13:14996626-14997517(-) (11)	NA	Q9SIQ2	GDSL esterase/lipase At2g31550	AT2G24560.1	GDSL-like Lipase/Acylhydrolase family protein 	LOC_Os01g61200.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g082250.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.211350.1.S1_at	A	A1TS	POPTR_0013s14940	POPTR_0013s14940 (11)	scaffold_13:15018759-15019355(-) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os05g39600.1	"ATCHX15, putative, expressed"	Medtr5g082340.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport||GO:0006950|response to stress	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.211351.1.S1_at	A	A1TS	POPTR_0013s14950	POPTR_0013s14950 (11)	scaffold_13:15022932-15023488(-) (11)	NA	NA	NA	AT5G01710.1	methyltransferases 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211352.1.S1_at	A	A1TS	POPTR_0013s14970	POPTR_0013s14970 (10)	scaffold_13:15040153-15040669(-) (11)	NA	Q8RWU5	F-box/LRR-repeat protein 3	AT5G01720.1	RNI-like superfamily protein 	LOC_Os11g01780.1	"F-box/LRR-repeat protein 3, putative, expressed"	Medtr7g138390.1	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.211353.1.S1_at	A	A1TS	POPTR_0013s14990	POPTR_0013s14990 (11)	scaffold_13:15048718-15048972(-) (11)	NA	P20144	Wound-induced protein 1	AT5G01740.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os05g27580.1	"wound-induced protein WI12, putative"	Medtr5g082480.1	Wound-induced WI12 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211354.1.S1_at	A	A1TS	POPTR_0013s15010	POPTR_0013s15010 (11)	scaffold_13:15069915-15071070(+) (11)	NA	NA	NA	AT2G30300.1	Major facilitator superfamily protein 	LOC_Os05g39800.1	"NFD4, putative, expressed"	Medtr5g026470.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211355.1.S1_s_at	A	A1TS	POPTR_0013s15020	POPTR_0013s15020 (11)	scaffold_13:15084158-15084529(+) (11)	NA	NA	NA	AT2G40435.1	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g47960.1	"basic helix-loop-helix domain containing protein, expressed"	Medtr5g091250.1	"transcription regulator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211356.1.S1_at	A	A1TS	POPTR_0013s15050	POPTR_0013s15050 (11)	scaffold_13:15106677-15107308(+) (11)	NA	P22195	Cationic peroxidase 1	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os04g55740.1	"peroxidase precursor, putative, expressed"	Medtr7g077890.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.211357.1.S1_at	A	A2TS	POPTR_0013s15060	POPTR_1462s00200 (11)//POPTR_0013s15060 (11)	scaffold_13:15111526-15112045(-) (11)//scaffold_1462:4685-5204(-) (11)	NA	NA	NA	AT5G58340.2	myb-like HTH transcriptional regulator family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211358.1.S1_at	A	A1TS	POPTR_0013s15070	POPTR_0013s15070 (11)	scaffold_13:15125691-15125852(+) (11)	NA	P35559	Insulin-degrading enzyme	AT1G06900.1	Insulinase (Peptidase family M16) family protein 	LOC_Os03g21810.1	"insulin-degrading enzyme, putative, expressed"	Medtr5g102730.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.211359.1.S1_at	A	A1TS	POPTR_0013s15100	POPTR_0013s15100 (10)	scaffold_13:15153937-15155151(+) (10)	NA	NA	NA	AT3G51620.2	PAP/OAS1 substrate-binding domain superfamily 	LOC_Os12g02260.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.211359.1.S1_s_at	A	A1TS	POPTR_0013s15100	POPTR_0013s15100 (11)	scaffold_13:15155253-15155423(+) (11)	NA	NA	NA	AT3G51620.2	PAP/OAS1 substrate-binding domain superfamily 	LOC_Os12g02260.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.211359.1.S1_x_at	A	A1TS	POPTR_0013s15100	POPTR_0013s15100 (10)	scaffold_13:15153879-15155376(+) (10)	NA	NA	NA	AT3G51620.2	PAP/OAS1 substrate-binding domain superfamily 	LOC_Os12g02260.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.211360.1.S1_at	A	A1TS	POPTR_0013s15100	POPTR_0013s15100 (11)	scaffold_13:15157067-15157537(+) (11)	NA	NA	NA	AT3G51620.2	PAP/OAS1 substrate-binding domain superfamily 	LOC_Os12g02260.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.211361.1.S1_at	A	A1TS	POPTR_0013s15140	POPTR_0013s15140 (11)	scaffold_13:15179347-15179945(-) (11)	NA	NA	NA	AT2G45260.1	Plant protein of unknown function (DUF641) 	LOC_Os10g23220.2	"GIL1, putative, expressed"	Medtr5g083010.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211362.1.S1_at	A	A1TS	POPTR_0013s15150	POPTR_0013s15150 (11)	scaffold_13:15190219-15190384(+) (11)	NA	Q1PEY6	EPIDERMAL PATTERNING FACTOR-like protein 6	AT2G30370.1	allergen-related 	LOC_Os01g60900.1	expressed protein	Medtr5g082990.1	"allergen-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211363.1.S1_at	A	A1TS	POPTR_0013s15170	POPTR_0013s15170 (10)	scaffold_13:15201571-15203291(+) (10)	NA	NA	NA	AT5G58370.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g60180.1	"GTPase of unknown function domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211364.1.S1_at	A	A1TS	POPTR_0013s15190	POPTR_0013s15190 (11)	scaffold_13:15208154-15209812(+) (11)	NA	Q8BX32	Structure-specific endonuclease subunit SLX1	AT2G30350.2	"Excinuclease ABC, C subunit, N-terminal "	LOC_Os07g12710.1	"GIY-YIG catalytic domain containing protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004518|nuclease activity	GO:0005622|intracellular
PtpAffx.211365.1.S1_at	A	A1TS	POPTR_0013s15210	POPTR_0013s15210 (11)	scaffold_13:15230234-15230785(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g091410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211366.1.S1_at	A	A1TS	POPTR_0013s15220	POPTR_0013s15220 (11)	scaffold_13:15240979-15241629(+) (11)	NA	Q8L5T5	LOB domain-containing protein 15	AT2G40470.1	LOB domain-containing protein 15 	LOC_Os01g60960.1	"DUF260 domain containing protein, putative, expressed"	Medtr3g145030.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211367.1.S1_at	A	A1TS	POPTR_0013s15270	POPTR_0013s15270 (11)	scaffold_13:15293433-15294119(+) (11)	NA	P22195	Cationic peroxidase 1	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os03g22020.1	"peroxidase precursor, putative, expressed"	Medtr5g082700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.211368.1.S1_s_at	A	A1TS	POPTR_0013s15330	POPTR_0013s15330 (11)	scaffold_13:15352599-15354038(-) (11)	NA	Q6Z3U3	B3 domain-containing protein Os07g0679700	AT2G30470.1	high-level expression of sugar-inducible gene 2 	LOC_Os07g48200.1	"B3 DNA binding domain containing protein, putative, expressed"	Medtr4g036540.1	"Transcriptional factor B3; Zinc finger, CW-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.211369.1.S1_at	A	A1TS	POPTR_0013s15280	POPTR_0013s15280 (9)	scaffold_13:15297863-15298435(-) (11)	NA	Q6S4P4	Transcription factor RF2b	AT2G40620.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g21800.2	"bZIP transcription factor family protein, putative, expressed"	Medtr5g083200.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.211370.1.S1_at	A	A1TS	POPTR_0013s15300	POPTR_0013s15300 (11)	scaffold_13:15305515-15306422(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g74620.1	conserved hypothetical protein	Medtr5g083220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211372.1.S1_at	A	A1TS	POPTR_0013s15345	POPTR_0013s15345 (11)	scaffold_13:15363747-15364678(+) (11)	NA	NA	NA	AT5G05240.1	Uncharacterised conserved protein (UCP030365) 	LOC_Os02g03940.1	expressed protein	Medtr1g008510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211373.1.S1_at	A	A1TS	POPTR_0013s15350	POPTR_0013s15350 (11)	scaffold_13:15365067-15366504(+) (11)	NA	Q9FPR6	Two-component response regulator ARR17	AT3G56380.1	response regulator 17 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g039500.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.211374.1.S1_at	A	A1TS	POPTR_0013s15370	POPTR_0013s15370 (11)	scaffold_13:15374117-15374627(-) (11)	NA	NA	NA	AT2G30480.3	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 189 Blast hits to 180 proteins in 63 species: Archae - 0; Bacteria - 43; Metazoa - 86; Fungi - 6; Plants - 19; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211375.1.S1_at	A	A1TS	POPTR_0013s15390	POPTR_0013s15390 (11)	scaffold_13:15396151-15396307(+) (11)	NA	Q6BY27	ATP-dependent RNA helicase DBP2	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os01g10050.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.211375.1.S1_s_at	A	A1TS	POPTR_0013s15390	POPTR_0013s15390 (11)	scaffold_13:15394639-15395694(+) (11)	NA	Q6BY27	ATP-dependent RNA helicase DBP2	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os01g10050.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.211376.1.S1_at	A	A1TS	POPTR_0013s15400	POPTR_0013s15400 (11)	scaffold_13:15398625-15398793(-) (11)	NA	NA	NA	AT5G58320.2	Kinase interacting (KIP1-like) family protein 	LOC_Os01g07370.2	"KIP1, putative, expressed"	Medtr5g083340.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211376.1.S1_x_at	A	A1TS	POPTR_0013s15400	POPTR_0013s15400 (11)	scaffold_13:15398627-15398978(-) (11)	NA	NA	NA	AT5G58320.2	Kinase interacting (KIP1-like) family protein 	LOC_Os01g07370.2	"KIP1, putative, expressed"	Medtr5g083340.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211377.1.S1_at	A	A1TS	POPTR_0013s15420	POPTR_0013s15420 (11)	scaffold_13:15407094-15407810(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g083350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211378.1.S1_x_at	A	A1TS	POPTR_0013s15480	POPTR_0013s15480 (10)	scaffold_13:15435335-15435915(-) (11)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g60330.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g083650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211379.1.S1_at	A	A1TS	POPTR_0013s15510	POPTR_0013s15510 (11)	scaffold_13:15457381-15457550(+) (11)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.2	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211380.1.S1_at	A	A1TS	POPTR_0013s15520	POPTR_0013s15520 (11)	scaffold_13:15477151-15477187(+) (11)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT1G06840.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr3g083770.1	Protein kinase; Adipokinetic hormone 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211380.1.S1_s_at	A	A2TS	POPTR_0013s15520	POPTR_0013s15520 (11)//POPTR_0013s15550 (10)	scaffold_13:15476375-15477162(+) (11)//scaffold_13:15506224-15507022(+) (10)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT1G06840.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr3g083770.1	Protein kinase; Adipokinetic hormone 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211382.1.S1_at	A	A2MS	POPTR_0013s15520	POPTR_0013s15520 (11)//POPTR_0013s15550 (11)	scaffold_13:15475531-15475857(+) (11)//scaffold_13:15505378-15505704(+) (11)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT1G06840.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr3g083770.1	Protein kinase; Adipokinetic hormone 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211382.1.S1_x_at	A	A2MS	POPTR_0013s15520	POPTR_0013s15520 (11)//POPTR_0013s15550 (11)	scaffold_13:15475531-15475857(+) (11)//scaffold_13:15505378-15505704(+) (11)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT1G06840.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr3g083770.1	Protein kinase; Adipokinetic hormone 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211383.1.S1_at	A	A1TS	POPTR_0013s15550	POPTR_0013s15550 (11)	scaffold_13:15507011-15507145(+) (11)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT1G06840.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr3g083770.1	Protein kinase; Adipokinetic hormone 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211386.1.S1_at	A	A1TS	POPTR_0013s15610	POPTR_0013s15610 (11)	scaffold_13:15538808-15540951(-) (11)	NA	NA	NA	AT5G01970.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). 	LOC_Os05g25070.1	expressed protein	Medtr3g083960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211387.1.S1_at	A	A1TS	POPTR_0013s15630	POPTR_0013s15630 (11)	scaffold_13:15554438-15554891(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211389.1.S1_at	A	A1TS	POPTR_0013s15670	POPTR_0013s15670 (11)	scaffold_13:15590567-15591241(+) (11)	NA	Q05047	Secologanin synthase	AT5G24910.1	"cytochrome P450, family 714, subfamily A, polypeptide 1 "	LOC_Os12g02640.1	"cytochrome P450 72A1, putative, expressed"	Medtr8g008330.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.21139.1.S1_at	A	A1TS	POPTR_0019s11050	POPTR_0019s11050 (11)	scaffold_19:12464275-12464683(-) (11)	POPTR_0019s11060 (7)	P02519	17.3 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211390.1.S1_at	A	A1TS	POPTR_0013s15680	POPTR_0013s15680 (11)	scaffold_13:15592000-15593039(+) (11)	NA	Q9SUR3	Reticulon-like protein B1	AT4G23630.1	VIRB2-interacting protein 1 	LOC_Os01g12650.1	"reticulon domain containing protein, putative, expressed"	Medtr1g126140.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.211391.1.S1_at	A	A1TS	POPTR_0013s15710	POPTR_0013s15710 (11)	scaffold_13:15607206-15607948(+) (11)	NA	Q14191	Werner syndrome ATP-dependent helicase	AT1G31360.1	RECQ helicase L2 	LOC_Os07g48360.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr2g006260.1	ATP-requiring DNA helicase RecQ; HRDC-like; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003676|nucleic acid binding||GO:0043140|ATP-dependent 3'-5' DNA helicase activity||GO:0005524|ATP binding	GO:0005622|intracellular
PtpAffx.211392.1.S1_at	A	A1TS	POPTR_0013s15720	POPTR_0013s15720 (11)	scaffold_13:15608765-15610728(-) (11)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT1G09575.1	Protein of unknown function (DUF607) 	LOC_Os12g02880.1	"E2F-related protein, putative, expressed"	Medtr5g083910.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211394.1.S1_at	A	A1TS	POPTR_0013s15760	POPTR_0013s15760 (11)	scaffold_13:15656060-15657180(+) (11)	NA	O23051	Ent-kaurenoic acid oxidase 1	AT1G05160.1	"cytochrome P450, family 88, subfamily A, polypeptide 3 "	LOC_Os06g02019.1	"cytochrome P450, putative, expressed"	Medtr5g014420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.211395.1.S1_at	A	A1TS	POPTR_0014s01120	POPTR_0014s01120 (11)	scaffold_14:1042611-1042978(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g005880.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211396.1.S1_at	A	A1MS	POPTR_0014s01100	POPTR_0014s01100 (9)	scaffold_14:1027097-1028567(+) (10)	NA	Q08A71	Probable protein arginine N-methyltransferase 6	AT3G20020.1	protein arginine methyltransferase 6 	LOC_Os10g34740.1	"methyltransferase, putative, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211396.1.S1_s_at	A	A1TS	POPTR_0014s01100	POPTR_0014s01100 (11)	scaffold_14:329267-329386(-) (10)//scaffold_14:1028564-1029252(+) (11)	NA	Q08A71	Probable protein arginine N-methyltransferase 6	AT3G20020.1	protein arginine methyltransferase 6 	LOC_Os10g34740.1	"methyltransferase, putative, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211398.1.S1_at	A	A1TS	POPTR_0014s01020	POPTR_0014s01020 (11)	scaffold_14:965593-967724(-) (11)	NA	NA	NA	NA	NA	LOC_Os05g25060.1	"PPR repeat domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211399.1.S1_at	A	A1TS	POPTR_0014s01010	POPTR_0014s01010 (11)	scaffold_14:961261-963931(+) (11)	NA	NA	NA	AT5G67580.2	Homeodomain-like/winged-helix DNA-binding family protein 	LOC_Os01g40670.1	"single myb histone, putative, expressed"	Medtr5g015490.1	"Linker histone, N-terminal; Homeodomain-related; "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.21140.1.S1_at	A	A1TS	POPTR_0002s10340	POPTR_0002s10340 (9)	scaffold_2:7441340-7441500(-) (9)	NA	Q8N5D0	WD and tetratricopeptide repeats protein 1	AT5G10940.2	transducin family protein / WD-40 repeat family protein 	LOC_Os03g08830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g148940.1	WD40-like; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211400.1.S1_at	A	A1TS	POPTR_0014s01000	POPTR_0014s01000 (10)	scaffold_14:956109-956967(+) (10)	NA	P59099	Amino-acid acetyltransferase	AT4G37670.2	N-acetyl-l-glutamate synthase 2 	LOC_Os03g31690.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g015470.1	Amino-acid N-acetyltransferase (ArgA) 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.211401.1.S1_at	A	A1TS	POPTR_0014s00990	POPTR_0014s00990 (11)	scaffold_14:947820-948195(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211402.1.S1_x_at	A	A1TS	POPTR_0014s00950	POPTR_0014s00950 (11)	scaffold_14:881778-882004(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211405.1.S1_at	A	A1TS	POPTR_0014s00960	POPTR_0014s00960 (11)	scaffold_14:910544-910729(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211405.1.S1_x_at	A	A1TS	POPTR_0014s00960	POPTR_0014s00960 (11)	scaffold_14:910544-911047(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211406.1.S1_s_at	A	A1MS	POPTR_0014s00920	POPTR_0014s00920 (9)	scaffold_14:834650-835013(+) (11)	NA	NA	NA	AT5G67620.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: microtubule; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g10320.1	expressed protein	Medtr8g101740.1	"T10O24.15, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211407.1.S1_at	A	A1TS	POPTR_0014s00910	POPTR_0014s00910 (11)	scaffold_14:825753-825999(-) (11)	NA	P42751	Cyclin-D1-1	AT1G70210.1	CYCLIN D1;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr8g073680.1	Cyclin-like; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211408.1.S1_at	A	A1TS	POPTR_0014s00870	POPTR_0014s00870 (10)	scaffold_14:796761-797131(-) (10)	NA	NA	NA	AT2G22880.1	VQ motif-containing protein 	NA	NA	Medtr8g101870.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211409.1.S1_at	A	A1TS	POPTR_0014s00850	POPTR_0014s00850 (11)	scaffold_14:785551-785593(-) (11)	NA	NA	NA	AT3G49800.1	BSD domain-containing protein 	LOC_Os05g43520.2	"BSD, putative, expressed"	Medtr5g015300.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211410.1.S1_at	A	A1TS	POPTR_0014s00840	POPTR_0014s00840 (11)	scaffold_14:784025-784861(+) (11)	NA	NA	NA	AT5G65890.1	ACT domain repeat 1 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr5g015290.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.211411.1.S1_at	A	A1MS	POPTR_0014s00830	POPTR_0014s00830 (11)	scaffold_14:774974-775563(-) (11)	NA	Q9SY57	Protein PHLOEM PROTEIN 2-LIKE A10	AT1G10150.1	Carbohydrate-binding protein 	LOC_Os03g56000.1	"PHLOEM 2-LIKE A10, putative, expressed"	Medtr5g015270.1	"Protein PHLOEM PROTEIN 2-LIKE A10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211412.1.S1_at	A	A1TS	POPTR_0014s00800	POPTR_0014s00800 (11)	scaffold_14:757435-757669(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211413.1.S1_at	A	A1TS	POPTR_0014s00760	POPTR_0014s00760 (11)	scaffold_14:726540-726974(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211413.1.S1_x_at	A	A1TS	POPTR_0014s00760	POPTR_0014s00760 (11)	scaffold_14:726484-726974(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211414.1.S1_at	A	A1MS	POPTR_0014s00730	POPTR_0014s00730 (9)	scaffold_14:701516-702286(-) (9)	POPTR_0014s00930 (7)//POPTR_0003s01120 (6)	NA	NA	AT5G67610.1	Uncharacterized conserved protein (DUF2215) 	LOC_Os03g31570.1	"proline-rich family protein, putative, expressed"	Medtr5g015430.1	"protein F1K23.6 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211415.1.S1_x_at	A	A1TS	POPTR_0014s00720	POPTR_0014s00720 (11)	scaffold_14:698877-699224(+) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039340.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211416.1.S1_at	A	A1TS	POPTR_0014s01260	POPTR_0014s01260 (11)	scaffold_14:1232338-1233522(+) (11)	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g56050.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.211417.1.S1_at	A	A1TS	POPTR_0014s01280	POPTR_0014s01280 (11)	scaffold_14:1247936-1248450(-) (11)	NA	Q12296	Protein MAM3	AT2G14520.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g47120.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211418.1.S1_at	A	A1TS	POPTR_0014s01290	POPTR_0014s01290 (11)	scaffold_14:1253694-1254215(-) (11)	NA	Q9M2Y7	Pentatricopeptide repeat-containing protein At3g49710	AT3G49710.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g01610.2	"pentatricopeptide, putative, expressed"	Medtr8g077070.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211419.1.S1_at	A	A1TS	POPTR_0014s01300	POPTR_0014s01300 (11)	scaffold_14:1278033-1278547(+) (11)	NA	P37821	1-aminocyclopropane-1-carboxylate synthase	AT4G37770.1	1-amino-cyclopropane-1-carboxylate synthase 8 	LOC_Os03g51740.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g015160.1	Aminotransferases class-I pyridoxal-phosphate-binding site; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.211420.1.S1_at	A	A1TS	POPTR_0014s01310	POPTR_0014s01310 (11)	scaffold_14:1289608-1290221(-) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT1G58470.1	RNA-binding protein 1 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr2g030270.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.211421.1.S1_at	A	A1TS	POPTR_0014s01330	POPTR_0014s01330 (11)	scaffold_14:1317430-1317932(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211422.1.S1_at	A	A1TS	POPTR_0014s01340	POPTR_0014s01340 (10)	scaffold_14:1321718-1322124(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g102000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211423.1.S1_at	A	A1TS	POPTR_0014s01380	POPTR_0014s01380 (11)	scaffold_14:1342107-1343376(-) (11)	NA	Q6RT24	Centromere-associated protein E	AT1G59540.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g35090.1	"kinesin motor domain containing protein, putative, expressed"	Medtr4g096670.1	"Kinesin, motor region; Zinc finger, RING-type "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.211424.1.S1_at	A	A1TS	POPTR_0014s01390	POPTR_0014s01390 (11)	scaffold_14:1354563-1354962(-) (11)	NA	NA	NA	AT1G59530.1	basic leucine-zipper 4 	LOC_Os08g26880.1	"bZIP transcription factor domain containing protein, expressed"	Medtr8g101980.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.211426.1.S1_at	A	A1TS	POPTR_0014s01440	POPTR_0014s01440 (9)	scaffold_14:1387048-1387471(-) (11)	NA	Q9SY57	Protein PHLOEM PROTEIN 2-LIKE A10	AT1G10150.1	Carbohydrate-binding protein 	LOC_Os03g56000.1	"PHLOEM 2-LIKE A10, putative, expressed"	Medtr5g015270.1	"Protein PHLOEM PROTEIN 2-LIKE A10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211427.1.S1_at	A	A1TS	POPTR_0014s01450	POPTR_0014s01450 (11)	scaffold_14:1392358-1394067(-) (11)	NA	NA	NA	AT1G10720.1	BSD domain-containing protein 	LOC_Os01g56100.1	"BSD domain containing protein, expressed"	Medtr5g015300.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211428.1.S1_at	A	A1TS	POPTR_0014s01460	POPTR_0014s01460 (11)	scaffold_14:1400037-1400620(-) (11)	NA	Q9FHN9	U-box domain-containing protein 31	AT5G65920.1	ARM repeat superfamily protein 	LOC_Os03g13010.1	"U-box domain containing protein, expressed"	Medtr5g015370.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.211428.1.S1_x_at	A	A1TS	POPTR_0014s01460	POPTR_0014s01460 (11)	scaffold_14:1400037-1400620(-) (11)	NA	Q9FHN9	U-box domain-containing protein 31	AT5G65920.1	ARM repeat superfamily protein 	LOC_Os03g13010.1	"U-box domain containing protein, expressed"	Medtr5g015370.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.211429.1.S1_at	A	A1TS	POPTR_0014s01500	POPTR_0014s01500 (11)	scaffold_14:1421012-1424514(-) (11)	NA	Q9SY55	"Calcium-transporting ATPase 3, endoplasmic reticulum-type"	AT1G10130.1	endoplasmic reticulum-type calcium-transporting ATPase 3 	LOC_Os03g52090.1	"calcium-transporting ATPase 3, endoplasmic reticulum-type, putative"	Medtr8g029470.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.211429.1.S1_s_at	A	A1TS	POPTR_0014s01500	POPTR_0014s01500 (11)	scaffold_14:1423199-1424530(-) (11)	NA	Q9SY55	"Calcium-transporting ATPase 3, endoplasmic reticulum-type"	AT1G10130.1	endoplasmic reticulum-type calcium-transporting ATPase 3 	LOC_Os03g52090.1	"calcium-transporting ATPase 3, endoplasmic reticulum-type, putative"	Medtr8g029470.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.211430.1.S1_at	A	A1TS	POPTR_0014s01540	POPTR_0014s01540 (11)	scaffold_14:1465817-1467135(-) (11)	NA	O04472	Putative nucleobase-ascorbate transporter 10	AT1G65550.1	Xanthine/uracil permease family protein 	LOC_Os08g32500.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr5g022030.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.211432.1.S1_at	A	A1TS	POPTR_0014s01560	POPTR_0014s01560 (11)	scaffold_14:1479213-1479784(+) (11)	NA	NA	NA	AT1G27461.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g39700.1	expressed protein	Medtr1g023000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211433.1.S1_at	A	A1TS	POPTR_0014s01570	POPTR_0014s01570 (11)	scaffold_14:1486434-1487234(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211434.1.S1_at	A	A1TS	POPTR_0014s01580	POPTR_0014s01580 (11)	scaffold_14:1493136-1493692(+) (11)	NA	O54922	Exocyst complex component 7	AT4G31540.1	exocyst subunit exo70 family protein G1 	LOC_Os08g40840.1	"exo70 exocyst complex subunit, putative"	Medtr1g022990.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.211436.1.S1_s_at	A	A1TS	POPTR_0014s01640	POPTR_0014s01640 (11)	scaffold_14:1529327-1530510(+) (11)	NA	Q5BIM8	DNA excision repair protein ERCC-8	AT1G27840.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g20430.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211437.1.S1_at	A	A1TS	POPTR_0014s01670	POPTR_0014s01670 (11)	scaffold_14:1547665-1549006(+) (11)	NA	O22193	U-box domain-containing protein 4	AT3G01400.1	ARM repeat superfamily protein 	LOC_Os03g32100.1	"spotted leaf 11, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211437.1.S1_s_at	A	A1TS	POPTR_0014s01670	POPTR_0014s01670 (11)	scaffold_14:1547587-1548950(+) (11)	NA	O22193	U-box domain-containing protein 4	AT3G01400.1	ARM repeat superfamily protein 	LOC_Os03g32100.1	"spotted leaf 11, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211438.1.S1_at	A	A1TS	POPTR_0014s01700	POPTR_0014s01700 (11)	scaffold_14:1586017-1586629(-) (11)	NA	Q10QA2	Cyclin-D5-3	AT4G37630.2	cyclin d5;1 	LOC_Os03g10650.1	"cyclin, putative, expressed"	Medtr5g015730.1	"Cyclin, N-terminal; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211439.1.S1_at	A	A1TS	POPTR_0014s01730	POPTR_0014s01730 (11)	scaffold_14:1619761-1620487(-) (11)	NA	Q84WK0	Transcription factor bHLH85	AT4G33880.1	ROOT HAIR DEFECTIVE 6-LIKE 2 	LOC_Os03g42100.1	helix-loop-helix DNA-binding domain containing protein	Medtr1g023470.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.211440.1.S1_at	A	A1TS	POPTR_0014s01780	POPTR_0014s01780 (10)	scaffold_14:1663429-1663614(-) (11)	NA	NA	NA	AT1G49890.1	Family of unknown function (DUF566)  	LOC_Os03g10820.1	expressed protein	Medtr1g023430.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211440.1.S1_s_at	A	A1TS	POPTR_0014s01780	POPTR_0014s01780 (11)	scaffold_14:1663477-1663992(-) (11)	NA	NA	NA	AT1G49890.1	Family of unknown function (DUF566)  	LOC_Os03g10820.1	expressed protein	Medtr1g023430.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211441.1.S1_at	A	A1TS	POPTR_0014s01790	POPTR_0014s01790 (11)	scaffold_14:1671382-1672424(-) (11)	NA	NA	NA	AT5G01075.1	Glycosyl hydrolase family 35 protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211445.1.S1_s_at	A	A1TS	POPTR_0014s06120	POPTR_0014s06120 (11)	scaffold_14:4606046-4606707(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211447.1.S1_s_at	A	A2TS	POPTR_0014s06060	POPTR_0014s06060 (11)//POPTR_0014s06130 (9)	scaffold_14:4529690-4530164(+) (11)//scaffold_14:4615515-4615989(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211448.1.S1_at	A	A1TS	POPTR_0014s06080	POPTR_0014s06080 (11)	scaffold_14:4564252-4564884(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211449.1.S1_at	A	A1TS	POPTR_0014s06090	POPTR_0014s06090 (11)	scaffold_14:4570046-4570220(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211449.1.S1_x_at	A	A1TS	POPTR_0014s06090	POPTR_0014s06090 (11)	scaffold_14:4570047-4570240(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211450.1.S1_at	A	A1TS	POPTR_0444s00210	POPTR_0444s00210 (11)	scaffold_444:5062-12450(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211451.1.S1_s_at	A	A3TS	POPTR_0014s06040	POPTR_0014s06040 (11)//POPTR_0444s00200 (11)//POPTR_0014s06070 (11)	scaffold_14:4515877-4516033(+) (11)//scaffold_14:4536622-4536778(+) (11)//scaffold_444:8443-8599(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211452.1.S1_at	A	A1TS	POPTR_0014s06140	POPTR_0014s06140 (11)	scaffold_14:4628442-4632238(-) (11)	NA	Q8NDF8	PAP-associated domain-containing protein 5	AT4G00060.1	Nucleotidyltransferase family protein 	LOC_Os06g45800.1	"PAP/25A associated domain containing protein, putative, expressed"	NA	NA	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.211453.1.S1_at	A	A1TS	POPTR_0014s06150	POPTR_0014s06150 (11)	scaffold_14:4656143-4656707(-) (11)	NA	Q42430	Zinc finger protein 1	AT3G60580.1	C2H2-like zinc finger protein 	LOC_Os10g40660.1	"ZOS10-07 - C2H2 zinc finger protein, expressed"	Medtr8g105670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.211454.1.S1_at	A	A1TS	POPTR_0014s06160	POPTR_0014s06160 (11)	scaffold_14:4668919-4669445(-) (11)	NA	Q42430	Zinc finger protein 1	AT1G02040.1	C2H2-type zinc finger family protein 	LOC_Os04g46670.1	"ZOS4-09 - C2H2 zinc finger protein, expressed"	Medtr4g036160.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.211456.1.S1_at	A	A1TS	POPTR_0014s06200	POPTR_0014s06200 (11)	scaffold_14:4720919-4721077(+) (11)	NA	NA	NA	AT3G60680.1	Plant protein of unknown function (DUF641) 	LOC_Os10g36400.1	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211456.1.S1_x_at	A	A1TS	POPTR_0014s06200	POPTR_0014s06200 (11)	scaffold_14:4720919-4721174(+) (11)	NA	NA	NA	AT3G60680.1	Plant protein of unknown function (DUF641) 	LOC_Os10g36400.1	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211457.1.S1_at	A	A1MS	POPTR_0014s06270	POPTR_0014s06270 (9)	scaffold_14:4781330-4781833(+) (9)	NA	Q84R10	Probable pectinesterase/pectinesterase inhibitor 36	AT3G60730.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211458.1.S1_s_at	A	A1TS	POPTR_0014s06340	POPTR_0014s06340 (11)	scaffold_14:4830460-4830814(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.211459.1.S1_at	A	A1TS	POPTR_0014s06350	POPTR_0014s06350 (11)	scaffold_14:4838862-4839169(+) (11)//scaffold_441:12955-13226(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.211460.1.S1_at	A	A1TS	POPTR_0014s06360	POPTR_0014s06360 (11)	scaffold_14:4842835-4844066(+) (11)	NA	Q8GXF0	DNA repair protein RAD51 homolog 3	AT2G45280.2	RAS associated with diabetes protein 51C 	LOC_Os01g39630.1	"DNA repair protein Rad51, putative, expressed"	Medtr8g116460.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211461.1.S1_at	A	A1TA	POPTR_0014s06380	POPTR_0014s06380 (11)	scaffold_14:4852721-4853020(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211461.1.S1_x_at	A	A1TA	POPTR_0014s06380	POPTR_0014s06380 (11)	scaffold_14:4852683-4853020(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211462.1.S1_at	A	A1TS	POPTR_0014s06410	POPTR_0014s06410 (11)	scaffold_14:4868431-4869104(-) (11)	NA	NA	NA	AT2G45320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 45 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g37430.2	expressed protein	Medtr4g069860.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211463.1.S1_at	A	A1TS	POPTR_0014s06440	POPTR_0014s06440 (11)	scaffold_14:4888959-4889471(-) (11)	NA	O22137	"Pentatricopeptide repeat-containing protein At2g45350, chloroplastic"	AT2G45350.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os09g15800.1	"tetratricopeptide-like helical, putative"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211464.1.S1_at	A	A1TS	POPTR_0014s06460	POPTR_0014s06460 (11)	scaffold_14:4904291-4904877(-) (11)	NA	NA	NA	AT5G62280.1	Protein of unknown function (DUF1442) 	NA	NA	Medtr4g025110.1	Protein of unknown function DUF1442 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211465.1.S1_at	A	A1TS	POPTR_0014s06470	POPTR_0014s06470 (11)	scaffold_14:4907749-4909684(-) (11)	NA	NA	NA	AT2G45380.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1); Has 171 Blast hits to 170 proteins in 31 species: Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). "	LOC_Os06g04390.1	expressed protein	Medtr4g025050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211466.1.S1_at	A	A1TS	POPTR_0014s06480	POPTR_0014s06480 (11)	scaffold_14:4912244-4914869(-) (11)	NA	Q8VYP5	Probable S-acyltransferase At3g60800	AT3G60800.1	DHHC-type zinc finger family protein 	LOC_Os03g58960.1	"DHHC zinc finger domain containing protein, expressed"	Medtr4g024940.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.211467.1.S1_at	A	A1TS	POPTR_0014s06490	POPTR_0014s06490 (11)	scaffold_14:4930725-4932244(+) (11)	NA	Q9C5P7	Protein transport Sec1a	AT1G02010.1	secretory 1A 	LOC_Os02g25580.1	"Sec1 family transport protein, putative, expressed"	Medtr4g024800.1	Sec1-like protein 	GO:0006904|vesicle docking during exocytosis	NA	NA
PtpAffx.211468.1.S1_at	A	A1TS	POPTR_0014s06510	POPTR_0014s06510 (11)	scaffold_14:4941102-4942112(-) (11)	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT4G12110.1	sterol-4alpha-methyl oxidase 1-1 	LOC_Os10g39810.1	"fatty acid hydroxylase, putative, expressed"	Medtr8g106630.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.211469.1.S1_at	A	A1TS	POPTR_0014s06520	POPTR_0014s06520 (11)	scaffold_14:4946495-4949270(-) (11)	NA	P57108	Glutathione S-transferase zeta class	AT2G02390.1	glutathione S-transferase zeta 1 	LOC_Os02g35590.2	"glutathione S-transferase, putative, expressed"	Medtr7g071180.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.211470.1.S1_at	A	A1TS	POPTR_0014s06530	POPTR_0014s06530 (11)	scaffold_14:4950886-4952159(-) (11)	NA	Q9FQ09	ATP-dependent DNA helicase 2 subunit KU80	AT1G48050.1	Ku80 family protein 	LOC_Os03g63920.1	"KAP-2, putative, expressed"	Medtr4g024770.1	Ku 	GO:0006303|double-strand break repair via nonhomologous end joining||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004003|ATP-dependent DNA helicase activity	GO:0005634|nucleus
PtpAffx.211471.1.S1_at	A	A1TS	POPTR_0014s06560	POPTR_0014s06560 (11)	scaffold_14:4982988-4984328(-) (11)	NA	Q9LZY0	65-kDa microtubule-associated protein 4	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211472.1.S1_at	A	A1TS	POPTR_0014s06570	POPTR_0014s06570 (11)	scaffold_14:4995009-4995046(+) (11)	NA	NA	NA	AT3G60850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g14290.1	expressed protein	AC233684_2.1	hypothetical protein AC233684.2 2311-2939 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211473.1.S1_at	A	A1TS	POPTR_0014s06640	POPTR_0014s06640 (11)	scaffold_14:5038575-5038983(+) (11)	NA	Q9FYK2	Probable calcium-binding protein CML25	AT1G24620.1	EF hand calcium-binding protein family 	LOC_Os01g72100.1	"OsCML10 - Calmodulin-related calcium sensor protein, expressed"	AC233676_4.1	Calcium-binding EF-hand AC233676.2 19416-20012 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211474.1.S1_at	A	A1TS	POPTR_0014s06650	POPTR_0014s06650 (11)	scaffold_14:5049136-5049549(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT2G45430.1	AT-hook motif nuclear-localized protein 22 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	Medtr5g098890.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211475.1.S1_at	A	A1TS	POPTR_0014s06710	POPTR_0014s06710 (11)	scaffold_14:5085137-5085590(-) (11)	NA	NA	NA	AT2G45460.2	SMAD/FHA domain-containing protein  	LOC_Os03g03560.1	"FHA domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211476.1.S1_at	A	A1TS	POPTR_0014s06720	POPTR_0014s06720 (11)	scaffold_14:5091117-5091917(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211477.1.S1_s_at	A	A1TS	POPTR_0014s06760	POPTR_0014s06760 (11)	scaffold_14:5114730-5115033(-) (11)	NA	Q6AZT2	Spastin	AT2G45500.1	AAA-type ATPase family protein 	LOC_Os06g03940.1	"spastin, putative, expressed"	Medtr4g069940.1	"AAA ATPase, central region; MIT "	NA	GO:0005524|ATP binding	NA
PtpAffx.211478.1.S1_at	A	A1TS	POPTR_0014s06770	POPTR_0014s06770 (11)	scaffold_14:5118342-5118701(+) (11)	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os06g03930.1	"cytochrome P450 86A1, putative, expressed"	AC233070_16.1	Cytochrome P450 AC233070.4 76058-73526 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.211480.1.S1_at	A	A1TS	POPTR_0014s06830	POPTR_0014s06830 (11)	scaffold_14:5144744-5145303(-) (11)	NA	NA	NA	AT2G45520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 260 Blast hits to 238 proteins in 75 species: Archae - 0; Bacteria - 6; Metazoa - 94; Fungi - 40; Plants - 38; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). 	LOC_Os06g03920.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211481.1.S1_at	A	A1TS	POPTR_0014s06850	POPTR_0014s06850 (11)	scaffold_14:5148048-5149313(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.2	WD-40 repeat family protein / beige-related 	LOC_Os02g44380.2	"WD domain containing protein, putative, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211482.1.S1_at	A	A1TS	POPTR_0014s06850	POPTR_0014s06850 (11)	scaffold_14:5152035-5155496(-) (11)	POPTR_0002s15100 (7)	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.2	WD-40 repeat family protein / beige-related 	LOC_Os02g44380.2	"WD domain containing protein, putative, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211483.1.S1_at	A	A1MS	POPTR_0014s06850	POPTR_0014s06850 (9)	scaffold_14:5159076-5160873(-) (9)	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.2	WD-40 repeat family protein / beige-related 	LOC_Os02g44380.2	"WD domain containing protein, putative, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211484.1.S1_at	A	A1TS	POPTR_0014s06850	POPTR_0014s06850 (11)	scaffold_14:5164016-5164534(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.2	WD-40 repeat family protein / beige-related 	LOC_Os02g44380.2	"WD domain containing protein, putative, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211485.1.S1_at	A	A1TS	POPTR_0014s06880	POPTR_0014s06880 (11)	scaffold_14:5192889-5193373(+) (11)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT2G45590.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	Medtr8g150930.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211486.1.S1_at	A	A1TS	POPTR_0014s06940	POPTR_0014s06940 (11)	scaffold_14:5225064-5225706(+) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT2G45630.2	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01650.1	erythronate-4-phosphate dehydrogenase domain containing protein	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.211487.1.S1_s_at	A	A2TS	POPTR_0002s15260	POPTR_0014s06960 (11)//POPTR_0002s15260 (11)	scaffold_14:5240469-5241135(+) (11)//scaffold_2:11399230-11399885(+) (11)	NA	Q39110	Gibberellin 20 oxidase 1	AT4G25420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g63970.1	"gibberellin 20 oxidase 1, putative, expressed"	Medtr1g129980.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.211487.1.S1_x_at	A	A1TS	POPTR_0014s06960	POPTR_0014s06960 (11)	scaffold_14:5240615-5241248(+) (11)	NA	Q39110	Gibberellin 20 oxidase 1	AT4G25420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g63970.1	"gibberellin 20 oxidase 1, putative, expressed"	Medtr1g129980.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.211489.1.S1_at	A	A1TS	POPTR_0014s06990	POPTR_0014s06990 (11)	scaffold_14:5255166-5257332(-) (11)	NA	O64644	Histone deacetylase complex subunit SAP18	AT2G45640.1	SIN3 associated polypeptide P18 	LOC_Os02g02960.4	"histone deacetylase complex subunit SAP18, putative, expressed"	AC233100_3.1	Sin3 associated polypeptide p18 AC233100.6 16242-12510 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211490.1.S1_at	A	A1TS	POPTR_0014s07000	POPTR_0014s07000 (9)	scaffold_14:5271887-5273575(+) (10)	NA	P29386	Agamous-like MADS-box protein AGL6	AT2G45650.1	AGAMOUS-like 6 	LOC_Os02g45770.1	"OsMADS6 - MADS-box family gene with MIKCc type-box, expressed"	Medtr7g083430.1	"Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.211491.1.S1_at	A	A1TS	POPTR_0014s07040	POPTR_0014s07040 (11)	scaffold_14:5316596-5317313(-) (11)	NA	Q8VYD9	"CRS2-associated factor 1, mitochondrial"	AT4G31010.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os08g07790.1	"CRS2-associated factor 2, mitochondrial precursor, putative, expressed"	Medtr7g083490.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.211492.1.S1_s_at	A	A1TS	POPTR_0014s07070	POPTR_0014s07070 (11)	scaffold_14:5343653-5344173(+) (11)	NA	P93733	Phospholipase D beta 1	AT2G42010.1	phospholipase D beta 1 	LOC_Os10g38060.2	"phospholipase D, putative, expressed"	Medtr7g083520.1	"C2; Phospholipase D, plant "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.211493.1.S1_at	A	A1TS	POPTR_0014s07080	POPTR_0014s07080 (11)	scaffold_14:5345004-5345946(-) (11)	NA	NA	NA	AT4G00231.1	ARM repeat superfamily protein 	LOC_Os03g02720.1	expressed protein	Medtr7g083540.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211494.1.S1_at	A	A1TS	POPTR_0014s07110	POPTR_0014s07110 (11)	scaffold_14:5359090-5360573(-) (11)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT3G61180.1	RING/U-box superfamily protein 	LOC_Os02g45240.1	"zinc finger family protein, putative, expressed"	Medtr7g083610.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211496.1.S1_at	A	A1TS	POPTR_0014s07150	POPTR_0014s07150 (11)	scaffold_14:5408163-5409117(-) (11)	NA	Q93W95	Probable methyltransferase PMT13	AT4G00740.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48140.1	"methyltransferase, putative, expressed"	Medtr7g083760.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.211497.1.S1_at	A	A1TS	POPTR_0014s07160	POPTR_0014s07160 (11)	scaffold_14:5414685-5415367(-) (11)	NA	P45432	COP9 signalosome complex subunit 1	AT3G61140.1	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os03g02540.1	"proteasome subunit, putative, expressed"	Medtr7g083770.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211498.1.S1_at	A	A1TS	POPTR_0014s07180	POPTR_0014s07180 (11)	scaffold_14:5429409-5429551(-) (11)	NA	Q9ZPH9	Probable methyltransferase PMT15	AT4G00750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.211498.1.S1_s_at	A	A1TS	POPTR_0014s07180	POPTR_0014s07180 (11)	scaffold_14:5428493-5429598(-) (11)	NA	Q9ZPH9	Probable methyltransferase PMT15	AT4G00750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.211500.1.S1_s_at	A	A1TS	POPTR_0014s07220	POPTR_0014s07220 (11)	scaffold_14:5460073-5460382(-) (11)//scaffold_14:5460609-5460920(-) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT1G33060.1	NAC 014 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211501.1.S1_s_at	A	A1TS	POPTR_0014s07210	POPTR_0014s07210 (11)	scaffold_14:5457198-5457564(-) (11)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211504.1.S1_at	A	A1TS	POPTR_0014s07220	POPTR_0014s07220 (11)	scaffold_14:5461862-5462640(-) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT1G33060.1	NAC 014 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211504.1.S1_s_at	A	A1TS	POPTR_0014s07220	POPTR_0014s07220 (11)	scaffold_14:5449280-5449882(+) (11)//scaffold_14:5462018-5462625(-) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT1G33060.1	NAC 014 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211505.1.S1_at	A	A1TS	POPTR_0014s07230	POPTR_0014s07230 (11)	scaffold_14:5467523-5468711(+) (11)	NA	Q8LG03	F-box protein At4g00755	AT4G00755.2	F-box family protein 	LOC_Os03g02560.1	"cyclin-like F-box, putative, expressed"	Medtr7g083800.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211506.1.S1_s_at	A	A1TS	POPTR_0014s07280	POPTR_0014s07280 (11)	scaffold_14:5497483-5497863(-) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os07g10410.1	AP2 domain containing protein	Medtr6g013450.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.211507.1.S1_at	A	A1MS	POPTR_0014s07290	POPTR_0014s07290 (9)	scaffold_14:5502367-5504180(-) (10)	NA	Q9SN28	RING-H2 finger protein ATL7	AT4G10150.1	RING/U-box superfamily protein 	LOC_Os02g45390.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211508.1.S1_at	A	A1TS	POPTR_0014s07300	POPTR_0014s07300 (11)	scaffold_14:5511890-5512353(+) (11)	NA	NA	NA	AT1G01840.1	unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g083890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211509.1.S1_at	A	A1TS	POPTR_0014s07310	POPTR_0014s07310 (11)	scaffold_14:5515105-5515991(-) (11)	NA	Q6ME80	Ribosomal RNA small subunit methyltransferase A	AT1G01860.1	Ribosomal RNA adenine dimethylase family protein 	LOC_Os02g03050.1	"dimethyladenosine transferase, putative, expressed"	Medtr7g083900.1	Ribosomal RNA adenine methylase transferase 	GO:0044260|cellular macromolecule metabolic process||GO:0000154|rRNA modification	"GO:0000179|""rRNA (adenine-N6,N6-)-dimethyltransferase activity"""	NA
PtpAffx.21151.2.A1_a_at	A	A1TS	POPTR_0013s02820	POPTR_0013s02820 (11)	scaffold_13:1710804-1711531(-) (11)	NA	NA	NA	AT5G27370.1	Protein of unknown function (DUF679) 	LOC_Os01g29240.1	expressed protein	Medtr2g025940.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211510.1.S1_at	A	A1TS	POPTR_0014s07320	POPTR_0014s07320 (11)	scaffold_14:5519084-5519718(-) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	LOC_Os01g67770.1	"two-component response regulator, putative, expressed"	Medtr3g102990.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.211511.1.S1_at	A	A1TS	POPTR_0014s07330	POPTR_0014s07330 (11)	scaffold_14:5526907-5527645(-) (11)	NA	Q9LPD2	Flap endonuclease GEN-like 1	AT1G01880.1	5'-3' exonuclease family protein 	LOC_Os09g35000.1	"flap endonuclease, putative, expressed"	Medtr7g083910.1	"Helix-hairpin-helix motif, class 2 "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0004518|nuclease activity	NA
PtpAffx.211512.1.S1_at	A	A1TS	POPTR_0014s07340	POPTR_0014s07340 (11)	scaffold_14:5533867-5534648(+) (11)	NA	NA	NA	AT4G00770.1	unknown protein; Has 127 Blast hits to 120 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 8; Plants - 62; Viruses - 3; Other Eukaryotes - 46 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211513.1.S1_at	A	A1TS	POPTR_0014s07350	POPTR_0014s07350 (11)	scaffold_14:5543327-5543700(+) (11)	NA	Q5R831	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT1G12600.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os03g02670.2	"transporter family protein, putative, expressed"	Medtr7g083930.2	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211514.1.S1_at	A	A1TS	POPTR_0014s07360	POPTR_0014s07360 (11)	scaffold_14:5547386-5548037(+) (11)	NA	NA	NA	AT2G01770.1	vacuolar iron transporter 1 	LOC_Os04g38940.1	"integral membrane protein, putative, expressed"	Medtr7g083940.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211515.1.S1_at	A	A1TS	POPTR_0014s07370	POPTR_0014s07370 (11)	scaffold_14:5548388-5549937(-) (11)	NA	Q9XI84	"Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT1G01920.1	SET domain-containing protein 	LOC_Os06g03676.1	"CAMK_CAMK_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr7g084290.1	Nuclear protein SET; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211516.1.S1_at	A	A1TS	POPTR_0014s07430	POPTR_0014s07430 (11)	scaffold_14:5594913-5595980(+) (11)	NA	B0JYZ2	Peroxisomal membrane protein PEX16	AT2G45690.1	shrunken seed protein (SSE1) 	LOC_Os02g03070.1	"SSE1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211517.1.S1_at	A	A1TS	POPTR_0014s07440	POPTR_0014s07440 (11)	scaffold_14:5596821-5597470(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211518.1.S1_at	A	A1TS	POPTR_0014s07480	POPTR_0014s07480 (11)	scaffold_14:5628126-5630393(-) (11)	NA	O67066	Cell division protein ftsY homolog	AT2G45770.1	"signal recognition particle receptor protein, chloroplast (FTSY) "	LOC_Os01g72800.1	"signal recognition particle receptor, putative, expressed"	Medtr8g034280.1	Cell division transporter substrate-binding protein FtsY 	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0005515|protein binding	NA
PtpAffx.211519.1.S1_at	A	A1TS	POPTR_0014s07510	POPTR_0014s07510 (11)	scaffold_14:5644306-5644898(-) (11)	NA	P29620	Cyclin-dependent kinase D-1	AT1G73690.1	cyclin-dependent kinase D1;1 	LOC_Os05g32600.1	"cyclin-dependent kinase D-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211520.1.S1_at	A	A1TS	POPTR_0014s07520	POPTR_0014s07520 (11)	scaffold_14:5652283-5653044(-) (11)	NA	Q9S7G7	Myb-related protein 3R-1	AT4G32730.2	Homeodomain-like protein 	LOC_Os12g13570.1	"MYB family transcription factor, putative, expressed"	AC225518_14.1	Homeodomain-like; AC225518.12 45180-39703 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211522.1.S1_at	A	A1TS	POPTR_0014s07660	POPTR_0014s07660 (11)	scaffold_14:5731129-5732125(-) (11)	NA	O65272	"K(+) efflux antiporter 2, chloroplastic"	AT4G00630.1	K+ efflux antiporter 2 	LOC_Os04g58620.1	"potasium efflux antiporter protein, putative, expressed"	Medtr7g084490.1	Sodium/hydrogen exchanger 	GO:0006813|potassium ion transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.211522.1.S1_s_at	A	A1TS	POPTR_0014s07660	POPTR_0014s07660 (11)	scaffold_14:5731153-5732297(-) (11)	POPTR_0002s15860 (6)	O65272	"K(+) efflux antiporter 2, chloroplastic"	AT4G00630.1	K+ efflux antiporter 2 	LOC_Os04g58620.1	"potasium efflux antiporter protein, putative, expressed"	Medtr7g084490.1	Sodium/hydrogen exchanger 	GO:0006813|potassium ion transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.211523.1.S1_at	A	A1TS	POPTR_0014s07660	POPTR_0014s07660 (10)	scaffold_14:5739614-5740148(-) (10)	NA	O65272	"K(+) efflux antiporter 2, chloroplastic"	AT4G00630.1	K+ efflux antiporter 2 	LOC_Os04g58620.1	"potasium efflux antiporter protein, putative, expressed"	Medtr7g084490.1	Sodium/hydrogen exchanger 	GO:0006813|potassium ion transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.211524.1.S1_at	A	A1TS	POPTR_0014s07680	POPTR_0014s07680 (11)	scaffold_14:5754340-5754647(+) (11)	NA	Q9LD43	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic"	AT2G38040.2	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211525.1.S1_at	A	A1TS	POPTR_0014s07720	POPTR_0014s07720 (11)	scaffold_14:5788459-5789229(+) (11)	NA	Q9V3R6	tRNA-specific adenosine deaminase 1	AT1G01760.1	adenosine deaminases;RNA binding;RNA binding;adenosine deaminases 	LOC_Os04g58690.1	"tRNA-specific adenosine deaminase 1, putative, expressed"	Medtr6g031090.1	Adenosine deaminase/editase 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004000|adenosine deaminase activity||GO:0003723|RNA binding	NA
PtpAffx.211527.1.S1_at	A	A1TS	POPTR_0014s07750	POPTR_0014s07750 (11)	scaffold_14:5808162-5808204(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211527.1.S1_s_at	A	A1TS	POPTR_0014s07750	POPTR_0014s07750 (11)	scaffold_14:5808127-5808513(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211528.1.S1_at	A	A1TS	POPTR_0014s07760	POPTR_0014s07760 (11)	scaffold_14:5814939-5815100(+) (11)	NA	Q6H5X0	Putative ripening-related protein 2	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	Medtr7g011840.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211529.1.S1_at	A	A1TS	POPTR_0014s07770	POPTR_0014s07770 (11)	scaffold_14:5814864-5817743(+) (11)	NA	Q6H5X0	Putative ripening-related protein 2	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	Medtr7g011840.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211530.1.S1_at	A	A1TS	POPTR_0014s07780	POPTR_0014s07780 (11)	scaffold_14:5818453-5818981(+) (11)	NA	Q6H5X0	Putative ripening-related protein 2	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	Medtr7g084920.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211531.1.S1_at	A	A1TS	POPTR_0014s07810	POPTR_0014s07810 (11)	scaffold_14:5835495-5836439(+) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT4G00710.1	BR-signaling kinase 3 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211532.1.S1_at	A	A1MS	POPTR_0014s07820	POPTR_0014s07820 (11)	scaffold_14:5837682-5838208(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT4G34131.1	UDP-glucosyl transferase 73B3 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211533.1.S1_at	A	A1MS	POPTR_0014s07830	POPTR_0014s07830 (11)	scaffold_14:5840785-5841948(-) (11)	NA	NA	NA	AT1G01730.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g085210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211534.1.S1_at	A	A1TS	POPTR_0014s07840	POPTR_0014s07840 (11)	scaffold_14:5844942-5845098(-) (11)	NA	Q6H5X0	Putative ripening-related protein 2	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	Medtr7g011830.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211534.1.S1_x_at	A	A1TS	POPTR_0014s07840	POPTR_0014s07840 (11)	scaffold_14:5844906-5845089(-) (11)	NA	Q6H5X0	Putative ripening-related protein 2	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	Medtr7g011830.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211535.1.S1_at	A	A1TS	POPTR_0014s07880	POPTR_0014s07880 (11)	scaffold_14:5861525-5862933(+) (11)	NA	NA	NA	AT4G00525.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g084440.1	"T1N6.11, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211536.1.S1_at	A	A1TS	POPTR_0014s07890	POPTR_0014s07890 (11)	scaffold_14:5863642-5864172(-) (11)	NA	Q9M2C9	F-box/kelch-repeat protein SKIP4	AT3G61350.1	SKP1 interacting partner 4 	LOC_Os02g02350.3	"OsFBK2 - F-box domain and kelch repeat containing protein, expressed"	Medtr8g119860.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211537.1.S1_at	A	A1TS	POPTR_0014s07920	POPTR_0014s07920 (11)	scaffold_14:5883216-5883605(-) (11)	NA	Q54X41	SOSS complex subunit B homolog	AT5G63690.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os07g37710.1	"oligonucleotide/oligosaccharide-binding fold containing 2B, putative"	Medtr3g016790.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211538.1.S1_at	A	A1MS	POPTR_0014s07970	POPTR_0014s07970 (10)	scaffold_14:5921846-5922311(-) (11)	NA	NA	NA	AT4G23340.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	NA	NA	Medtr7g087320.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211540.1.S1_at	A	A1TS	POPTR_0014s07990	POPTR_0014s07990 (11)	scaffold_14:5930517-5931318(+) (11)	NA	Q9LQ89	Rop guanine nucleotide exchange factor 2	AT4G00460.2	RHO guanyl-nucleotide exchange factor 3 	LOC_Os10g40270.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g087330.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.211541.1.S1_at	A	A1TS	POPTR_0014s08000	POPTR_0014s08000 (11)	scaffold_14:5931568-5932108(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211542.1.S1_at	A	A1TS	POPTR_0014s08020	POPTR_0014s08020 (11)	scaffold_14:5941439-5941796(-) (11)	NA	Q54U49	Putative mediator of RNA polymerase II transcription subunit 12	AT4G00450.1	RNA polymerase II transcription mediators 	LOC_Os07g45400.1	expressed protein	Medtr7g087340.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.211543.1.S1_at	A	A1TS	POPTR_0014s08080	POPTR_0014s08080 (11)	scaffold_14:6004908-6006082(+) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os09g39620.1	"protein kinase family protein, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211544.1.S1_at	A	A1TS	POPTR_0014s08090	POPTR_0014s08090 (11)	scaffold_14:6007076-6007319(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g06760.3	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211545.1.S1_at	A	A1TS	POPTR_0014s08100	POPTR_0014s08100 (11)	scaffold_14:6009446-6009930(+) (11)	NA	NA	NA	AT4G01590.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211546.1.S1_at	A	A1TS	POPTR_0014s08120	POPTR_0014s08120 (11)	scaffold_14:6025492-6026479(-) (11)	NA	Q8LF97	SKP1-like protein 21	AT3G61415.1	SKP1-like 21 	LOC_Os03g01660.1	"SKP1, putative, expressed"	Medtr8g031960.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.211547.1.S1_at	A	A1TS	POPTR_0014s08160	POPTR_0014s08160 (11)	scaffold_14:6056612-6056915(-) (11)	NA	O23066	Cytochrome P450 86A2	AT2G45970.1	"cytochrome P450, family 86, subfamily A, polypeptide 8 "	LOC_Os02g44654.2	"cytochrome P450, putative, expressed"	Medtr8g031910.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.211548.1.S1_at	A	A1TS	POPTR_0014s08170	POPTR_0014s08170 (11)	scaffold_14:6064617-6065782(-) (11)	NA	O43913	Origin recognition complex subunit 5	AT4G29910.1	origin recognition complex protein 5 	LOC_Os03g55200.1	"ORC5 - Putative origin recognition complex subunit 5, expressed"	Medtr7g087520.1	"ATORC5/ORC5 ; pr, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211550.1.S1_at	A	A1TS	POPTR_0014s08200	POPTR_0014s08200 (11)	scaffold_14:6085382-6085853(-) (11)	NA	NA	NA	AT2G46000.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g05450.1	expressed protein	Medtr7g087570.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211551.1.S1_at	A	A1TS	POPTR_0014s08220	POPTR_0014s08220 (11)	scaffold_14:6097886-6099417(+) (11)	NA	Q94AH9	rRNA 2'-O-methyltransferase fibrillarin 2	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211552.1.S1_at	A	A1TS	POPTR_0014s08230	POPTR_0014s08230 (10)	scaffold_14:6108277-6109034(+) (11)	NA	Q6EVK6	ATP-dependent helicase BRM	AT2G46020.2	"transcription regulatory protein SNF2, putative "	LOC_Os02g02290.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g087810.1	"SNF2-related; Bromodomain; Helicase, C-terminal; ; "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0005634|nucleus
PtpAffx.211553.1.S1_x_at	A	A1TS	POPTR_0014s08250	POPTR_0014s08250 (11)	scaffold_14:6130346-6130901(-) (11)	NA	NA	NA	AT2G46040.1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein 	LOC_Os04g08410.1	"ELM2 domain containing protein, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211556.1.S1_at	A	A1TS	POPTR_0014s08280	POPTR_0014s08280 (11)	scaffold_14:6156629-6157153(-) (11)	NA	Q39203	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2	AT4G00340.1	receptor-like protein kinase 4 	LOC_Os07g36780.1	"S-domain receptor-like protein kinase, putative, expressed"	Medtr8g031820.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; N/apple PAN 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211557.1.S1_at	A	A1TS	POPTR_0014s08300	POPTR_0014s08300 (11)	scaffold_14:6171270-6171813(+) (11)	NA	O82363	"Pentatricopeptide repeat-containing protein At2g46050, mitochondrial"	AT2G46050.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g15570.1	"pentatricopeptide, putative, expressed"	AC235567_11.1	Pentatricopeptide repeat AC235567.1 44989-43022 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211558.1.S1_at	A	A1TS	POPTR_0014s08330	POPTR_0014s08330 (11)	scaffold_14:6188191-6189186(+) (11)	NA	Q9SF29	Syntaxin-71	AT3G09740.1	syntaxin of plants 71 	LOC_Os05g48020.1	"SNARE domain containing protein, putative, expressed"	Medtr1g078960.1	Syntaxin/epimorphin family 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211559.1.S1_at	A	A1TS	POPTR_0014s08340	POPTR_0014s08340 (11)	scaffold_14:6196101-6196588(-) (11)	NA	NA	NA	AT4G00310.2	Putative membrane lipoprotein 	NA	NA	Medtr3g019620.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211560.1.S1_at	A	A1TS	POPTR_0014s08370	POPTR_0014s08370 (11)	scaffold_14:6224862-6225168(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211561.1.S1_at	A	A1TS	POPTR_0014s08390	POPTR_0014s08390 (11)	scaffold_14:6245987-6246653(-) (11)	NA	Q9XYS3	Superoxide-generating NADPH oxidase heavy chain subunit A	AT1G01580.1	ferric reduction oxidase 2 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.211562.1.S1_at	A	A1TS	POPTR_0014s08430	POPTR_0014s08430 (11)	scaffold_14:6265869-6268030(-) (11)	NA	NA	NA	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g10230.1	"glucosyltransferase, putative, expressed"	Medtr2g008380.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211563.1.S1_at	A	A1TS	POPTR_0014s08450	POPTR_0014s08450 (11)	scaffold_14:6279336-6280274(-) (11)	NA	Q39024	Mitogen-activated protein kinase 4	AT4G01370.1	MAP kinase 4 	LOC_Os10g38950.1	"CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g088400.1	Serine/threonine protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211564.1.S1_x_at	A	A1TS	POPTR_0014s08550	POPTR_0014s08550 (11)	scaffold_14:6353924-6355370(+) (11)	NA	NA	NA	AT1G01490.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g38870.1	"heavy metal-associated domain containing protein, expressed"	AC235567_30.1	Heavy metal transport/detoxification protein AC235567.1 97384-100523 F EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.211565.1.S1_s_at	A	A1TS	POPTR_0014s08560	POPTR_0014s08560 (11)	scaffold_14:6365508-6366815(-) (11)	NA	NA	NA	AT4G01270.1	RING/U-box superfamily protein 	LOC_Os08g05560.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_86.1	"Zinc finger, RING-type AC235567.1 321373-315992 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211566.1.S1_at	A	A1TS	POPTR_0014s08570	POPTR_0014s08570 (11)	scaffold_14:6373074-6373476(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211568.1.S1_at	A	A1TS	POPTR_0014s08611	POPTR_0014s08611 (10)	scaffold_14:6400895-6401461(-) (11)	NA	Q9M316	"Pentatricopeptide repeat-containing protein At3g61520, mitochondrial"	AT3G61520.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g13950.1	"pentatricopeptide, putative, expressed"	Medtr8g112650.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211569.1.S1_at	A	A1TS	POPTR_0014s08620	POPTR_0014s08620 (11)	scaffold_14:6404849-6407260(-) (11)	NA	B0TC10	3-methyl-2-oxobutanoate hydroxymethyltransferase	AT2G46110.1	ketopantoate hydroxymethyltransferase 1 	LOC_Os01g12560.1	"3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed"	AC235567_90.1	Ketopantoate hydroxymethyltransferase AC235567.1 345051-342096 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0015940|pantothenate biosynthetic process	GO:0003864|3-methyl-2-oxobutanoate hydroxymethyltransferase activity	NA
PtpAffx.211570.1.S1_at	A	A1TS	POPTR_0014s08640	POPTR_0014s08640 (9)	scaffold_14:6418497-6420076(+) (9)	NA	Q8GY11	Probable WRKY transcription factor 43	AT2G46130.1	WRKY DNA-binding protein 43 	LOC_Os01g53260.1	"OsWRKY23 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088920.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.211570.1.S1_x_at	A	A1TS	POPTR_0014s08640	POPTR_0014s08640 (11)	scaffold_14:6418390-6420171(+) (11)	NA	Q8GY11	Probable WRKY transcription factor 43	AT2G46130.1	WRKY DNA-binding protein 43 	LOC_Os01g53260.1	"OsWRKY23 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088920.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.211571.1.S1_at	A	A1TS	POPTR_0014s08660	POPTR_0014s08660 (10)	scaffold_14:6428923-6429358(+) (11)	NA	NA	NA	AT2G46150.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211572.1.S1_at	A	A1TS	POPTR_0014s08670	POPTR_0014s08670 (11)	scaffold_14:6436455-6436989(+) (11)	NA	Q9M313	RING-H2 finger protein ATL68	AT3G61550.1	RING/U-box superfamily protein 	LOC_Os01g53500.1	"RING-H2 finger protein ATL2M, putative, expressed"	Medtr7g089020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211573.1.S1_at	A	A1MS	POPTR_0014s08680	POPTR_0014s08680 (11)	scaffold_14:6438682-6439224(+) (11)	NA	NA	NA	AT4G01240.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g27980.1	"methyltransferase domain containing protein, expressed"	Medtr5g085490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211574.1.S1_at	A	A1TS	POPTR_0014s08710	POPTR_0014s08710 (11)	scaffold_14:6463879-6465397(-) (11)	NA	NA	NA	AT2G46200.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g12670.5	expressed protein	Medtr4g092600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211575.1.S1_at	A	A1TS	POPTR_0014s08720	POPTR_0014s08720 (11)	scaffold_14:6476423-6476958(-) (11)	NA	NA	NA	AT5G52900.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g125930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211577.1.S1_at	A	A1TS	POPTR_0014s08730	POPTR_0014s08730 (11)	scaffold_14:6480426-6480981(-) (11)	NA	P51614	Acidic endochitinase	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr5g046400.1	"Glycoside hydrolase, family 18 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.211578.1.S1_at	A	A1TS	POPTR_0014s08740	POPTR_0014s08740 (11)	scaffold_14:6482877-6483465(+) (11)	NA	P51614	Acidic endochitinase	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr5g046400.1	"Glycoside hydrolase, family 18 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.211579.1.S1_at	A	A1TS	POPTR_0014s08770	POPTR_0014s08770 (11)	scaffold_14:6502813-6503981(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211581.1.S1_at	A	A1TS	POPTR_0014s08810	POPTR_0014s08810 (11)	scaffold_14:6519834-6520764(+) (11)	NA	Q54RP0	UDP-galactose:fucoside alpha-3-galactosyltransferase	AT4G01220.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os05g32120.1	"alpha 1,3-xylosyltransferase, putative, expressed"	AC235671_3.1	Reticulon AC235671.2 18499-13273 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211581.1.S1_x_at	A	A1TS	POPTR_0014s08810	POPTR_0014s08810 (11)	scaffold_14:6519397-6520764(+) (11)	NA	Q54RP0	UDP-galactose:fucoside alpha-3-galactosyltransferase	AT4G01220.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os05g32120.1	"alpha 1,3-xylosyltransferase, putative, expressed"	AC235671_3.1	Reticulon AC235671.2 18499-13273 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211582.1.S1_at	A	A1TS	POPTR_0014s08820	POPTR_0014s08820 (11)	scaffold_14:6530828-6533001(+) (11)	NA	NA	NA	AT4G01210.1	glycosyl transferase family 1 protein 	LOC_Os01g43380.1	"glycosyltransferase family protein 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211583.1.S1_at	A	A1TS	POPTR_0014s08860	POPTR_0014s08860 (11)	scaffold_14:6542838-6543227(-) (11)	NA	P29060	Acidic endochitinase	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr5g046400.1	"Glycoside hydrolase, family 18 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.211584.1.S1_at	A	A1TS	POPTR_0014s08870	POPTR_0014s08870 (11)	scaffold_14:6545655-6545979(-) (11)	NA	P29061	Basic endochitinase	AT5G24090.1	chitinase A 	LOC_Os01g64100.1	"glycosyl hydrolase, putative, expressed"	AC146568_9.1	"Glycoside hydrolase, chitinase active site AC146568.11 45116-44051 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211585.1.S1_at	A	A1TS	POPTR_0014s08880	POPTR_0014s08880 (11)	scaffold_14:6548070-6552204(-) (11)	NA	O49354	"Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial"	AT2G30920.1	coenzyme Q 3 	LOC_Os06g05900.1	"methyltransferase, putative, expressed"	Medtr5g099200.1	Ubiquinone biosynthesis O-methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.211586.1.S1_at	A	A1TS	POPTR_0014s08900	POPTR_0014s08900 (11)	scaffold_14:6571853-6574031(+) (11)	NA	Q9M149	Putative phosphatidylinositol-4-phosphate 5-kinase 11	AT4G01190.1	phosphatidylinositol phosphate kinase 10 	LOC_Os02g57660.2	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g144350.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.211587.1.S1_at	A	A1TS	POPTR_0014s08910	POPTR_0014s08910 (11)	scaffold_14:6575061-6576190(+) (11)	NA	Q9LMN1	Phosphatidylinositol-4-phosphate 5-kinase 10	AT1G01460.1	"Phosphatidylinositol-4-phosphate 5-kinase, core "	LOC_Os12g04700.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g144350.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211588.1.S1_at	A	A1TS	POPTR_0014s08920	POPTR_0014s08920 (11)	scaffold_14:6585095-6585677(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT5G41620.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g15980.1	expressed protein	Medtr5g009870.1	"Uncharacterized protein At5g41620, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211589.1.S1_at	A	A1TS	POPTR_0014s08930	POPTR_0014s08930 (11)	scaffold_14:6586569-6586723(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g04660.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211590.1.S1_at	A	A1MS	POPTR_0014s08950	POPTR_0014s08950 (11)	scaffold_14:6620176-6620447(+) (11)	NA	P56331	Eukaryotic translation initiation factor 1A	AT2G04520.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os06g23440.1	"eukaryotic translation initiation factor 1A, putative, expressed"	AC233577_18.1	Eukaryotic initiation factor 1A (eIF-1A) AC233577.5 84946-84143 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.211591.1.S1_at	A	A1TS	POPTR_0014s08970	POPTR_0014s08970 (11)	scaffold_14:6626540-6627024(+) (11)	NA	NA	NA	AT4G01140.1	Protein of unknown function (DUF1191) 	LOC_Os12g02550.1	expressed protein	Medtr7g080660.1	Protein of unknown function DUF1191 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211593.1.S1_s_at	A	A1TS	POPTR_0014s09010	POPTR_0014s09010 (11)	scaffold_14:6664981-6665195(+) (11)	NA	NA	NA	AT2G46300.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g39290.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr7g143600.1	Harpin-induced 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211594.1.S1_at	A	A1TS	POPTR_0014s09020	POPTR_0014s09020 (11)	scaffold_14:6671274-6671771(+) (11)	NA	O82339	Ethylene-responsive transcription factor CRF5	AT2G46310.1	cytokinin response factor 5 	LOC_Os01g46870.1	"AP2 domain containing protein, expressed"	Medtr3g124710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.211595.1.S1_at	A	A1TS	POPTR_0014s09030	POPTR_0014s09030 (11)	scaffold_14:6678881-6679846(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211596.1.S1_at	A	A1TS	POPTR_0014s09060	POPTR_0014s09060 (11)	scaffold_14:6686287-6688024(-) (11)	NA	P38557	Tubulin gamma-1 chain	AT3G61650.1	gamma-tubulin 	LOC_Os05g06450.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g143680.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.211597.1.S1_at	A	A1TS	POPTR_0014s09070	POPTR_0014s09070 (11)	scaffold_14:6693424-6693565(-) (11)	NA	NA	NA	AT5G41761.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g33200.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211598.1.S1_at	A	A1TS	POPTR_0014s09090	POPTR_0014s09090 (11)	scaffold_14:6707068-6707850(+) (11)	NA	P25848	Light-sensor Protein kinase	AT1G64300.2	Protein kinase family protein 	LOC_Os01g43350.1	"protein kinase family protein, putative, expressed"	Medtr5g009670.1	Protein kinase-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211599.1.S1_at	A	A1TS	POPTR_0014s09130	POPTR_0014s09130 (10)	scaffold_14:6763990-6764288(+) (11)	NA	NA	NA	AT3G61660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46375.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211600.1.S1_at	A	A1TS	POPTR_0014s09160	POPTR_0014s09160 (11)	scaffold_14:6791116-6791901(+) (11)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g43280.1	"hydroquinone glucosyltransferase, putative, expressed"	Medtr7g040180.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211602.1.S1_at	A	A1TS	POPTR_0014s09270	POPTR_0014s09270 (11)	scaffold_14:6878828-6879370(+) (11)	NA	Q9SV26	"Pentatricopeptide repeat-containing protein At4g01030, mitochondrial"	AT4G01030.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os05g50950.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	AC233680_25.1	Pentatricopeptide repeat AC233680.1 106255-104220 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211603.1.S1_at	A	A1TS	POPTR_0014s09270	POPTR_0014s09270 (11)	scaffold_14:6880402-6881000(+) (11)	NA	Q9SV26	"Pentatricopeptide repeat-containing protein At4g01030, mitochondrial"	AT4G01030.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os05g50950.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	AC233680_25.1	Pentatricopeptide repeat AC233680.1 106255-104220 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211604.1.S1_at	A	A1TS	POPTR_0014s09290	POPTR_0014s09290 (11)	scaffold_14:6902653-6903479(+) (11)	NA	NA	NA	AT3G61680.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g43140.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.211605.1.S1_at	A	A1TS	POPTR_0014s09320	POPTR_0014s09320 (9)	scaffold_14:6913090-6914089(+) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.211606.1.S1_at	A	A1TS	POPTR_0014s09330	POPTR_0014s09330 (11)	scaffold_14:6929012-6929297(-) (11)	NA	Q9FFQ1	DEAD-box ATP-dependent RNA helicase 31	AT5G63630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g43120.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.211606.1.S1_s_at	A	A1TS	POPTR_0014s09330	POPTR_0014s09330 (11)	scaffold_14:6929315-6929588(-) (11)	NA	Q9FFQ1	DEAD-box ATP-dependent RNA helicase 31	AT5G63630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g43120.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.211607.1.S1_at	A	A1TS	POPTR_0014s09340	POPTR_0014s09340 (11)	scaffold_14:6947655-6947874(+) (11)	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211608.1.S1_at	A	A1TS	POPTR_0014s09380	POPTR_0014s09380 (11)	scaffold_14:6964452-6965596(-) (11)	NA	P0CH01	Putative RING-H2 finger protein ATL21A	AT2G46495.1	RING/U-box superfamily protein 	LOC_Os08g37760.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235758_12.1	"Zinc finger, RING-type AC235758.1 57299-60764 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211609.1.S1_at	A	A1TS	POPTR_0014s09390	POPTR_0014s09390 (11)	scaffold_14:6966619-6967119(-) (11)	NA	Q9M365	Probable F-box protein At3g61730	AT5G36000.1	BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g11990.1	expressed protein	AC235758_10.1	Cyclin-like F-box AC235758.1 51077-54013 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211610.1.S1_at	A	A1TS	POPTR_0014s09390	POPTR_0014s09390 (10)	scaffold_14:6968116-6969693(-) (10)	NA	Q9M365	Probable F-box protein At3g61730	AT5G36000.1	BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g11990.1	expressed protein	AC235758_10.1	Cyclin-like F-box AC235758.1 51077-54013 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211611.1.S1_at	A	A1TS	POPTR_0014s09410	POPTR_0014s09410 (10)	scaffold_14:6999062-7001068(+) (10)	POPTR_0002s17200 (8)	O15818	Protein KIAA0664 homolog	AT1G01320.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g23990.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	AC235758_23.1	Tetratricopeptide-like helical; AC235758.1 151415-160426 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211612.1.S1_at	A	A1TS	POPTR_0014s09410	POPTR_0014s09410 (10)	scaffold_14:7004356-7005700(+) (10)	NA	O15818	Protein KIAA0664 homolog	AT1G01320.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g23990.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	AC235758_23.1	Tetratricopeptide-like helical; AC235758.1 151415-160426 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211613.1.S1_at	A	A1TS	POPTR_0014s09440	POPTR_0014s09440 (11)	scaffold_14:7012785-7013634(-) (11)	NA	Q93ZR6	O-acyltransferase WSD1	AT5G53390.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os05g48260.1	"wax synthase, putative, expressed"	Medtr1g009270.2	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211615.1.S1_at	A	A1TS	POPTR_0014s09450	POPTR_0014s09450 (11)	scaffold_14:7022220-7022685(+) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT2G46500.2	phosphoinositide 4-kinase gamma 4 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	AC235758_32.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin AC235758.1 205204-208422 E EGN_Mt090430 200"	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.211616.1.S1_at	A	A1TS	POPTR_0014s09460	POPTR_0014s09460 (11)	scaffold_14:7027097-7027842(-) (11)	NA	NA	NA	AT3G61780.1	embryo defective 1703 	NA	NA	AC235758_33.1	EMB1703 AC235758.1 217382-211662 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211617.1.S1_at	A	A1TS	POPTR_0014s09480	POPTR_0014s09480 (11)	scaffold_14:7039705-7039980(-) (11)	NA	Q2YD98	Uncharacterized protein KIAA1530	AT3G61800.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR018610), ENTH/VHS (InterPro:IPR008942); Has 308 Blast hits to 279 proteins in 95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi - 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink). "	LOC_Os02g19170.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211618.1.S1_at	A	A1TS	POPTR_0014s09520	POPTR_0014s09520 (11)	scaffold_14:7068302-7068666(-) (11)	NA	Q9LNJ5	Transcription factor bHLH13	AT1G01260.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g13460.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.211618.1.S1_x_at	A	A1TS	POPTR_0014s09520	POPTR_0014s09520 (11)	scaffold_14:7068306-7068666(-) (11)	NA	Q9LNJ5	Transcription factor bHLH13	AT1G01260.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g13460.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.211619.1.S1_at	A	A1TS	POPTR_0014s09530	POPTR_0014s09530 (11)	scaffold_14:7086895-7087985(+) (11)	NA	NA	NA	NA	NA	NA	NA	AC235567_47.1	"HMG-I and HMG-Y, DNA-binding, putative AC235567.1 162957-161375 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211620.1.S1_at	A	A1TS	POPTR_0014s09550	POPTR_0014s09550 (10)	scaffold_14:7109251-7109849(+) (11)	NA	Q9ZPY7	Exportin-2	AT2G46520.1	"cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative "	LOC_Os01g13430.1	"importin-alpha re-exporter, putative, expressed"	Medtr6g062000.1	Armadillo-like helical 	GO:0008283|cell proliferation||GO:0006886|intracellular protein transport	GO:0008262|importin-alpha export receptor activity	GO:0005737|cytoplasm||GO:0005634|nucleus
PtpAffx.211623.1.S1_at	A	A1TS	POPTR_0014s09640	POPTR_0014s09640 (11)	scaffold_14:7195502-7195984(+) (11)	NA	Q43385	Dof zinc finger protein DOF3.7	AT3G61850.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os04g47990.2	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.211624.1.S1_at	A	A1TS	POPTR_0014s09660	POPTR_0014s09660 (11)	scaffold_14:7215520-7215981(+) (11)	NA	Q84TG3	E3 ubiquitin-protein ligase PUB23	AT2G35930.1	plant U-box 23 	LOC_Os04g58920.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.211625.1.S1_at	A	A1TS	POPTR_0014s09690	POPTR_0014s09690 (11)	scaffold_14:7227021-7227890(-) (11)	NA	Q8N0W3	L-fucose kinase	AT1G01220.1	L-fucokinase/GDP-L-fucose pyrophosphorylase 	LOC_Os03g02410.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr7g145710.1	Sugar transporter superfamily; L-fucokinase 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.211626.1.S1_at	A	A1TS	POPTR_0014s09690	POPTR_0014s09690 (10)	scaffold_14:7232796-7233446(-) (11)	NA	Q8N0W3	L-fucose kinase	AT1G01220.1	L-fucokinase/GDP-L-fucose pyrophosphorylase 	LOC_Os03g02410.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr7g145710.1	Sugar transporter superfamily; L-fucokinase 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.211627.1.S1_at	A	A1TS	POPTR_0014s09700	POPTR_0014s09700 (11)	scaffold_14:7237455-7238105(+) (11)	NA	Q6EU49	Probable serine/threonine-protein kinase WNK4	AT3G18750.3	with no lysine (K) kinase 6 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr3g109240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211628.1.S1_at	A	A1TS	POPTR_0014s09710	POPTR_0014s09710 (11)	scaffold_14:7241720-7242252(+) (11)	NA	Q9T096	Protein yippee-like At4g27745	AT4G27745.1	Yippee family putative zinc-binding protein 	LOC_Os11g35020.2	"yippee zinc-binding protein, putative, expressed"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211629.1.S1_at	A	A1TS	POPTR_0014s09730	POPTR_0014s09730 (11)	scaffold_14:7246863-7247591(-) (11)	NA	P92964	Arginine/serine-rich-splicing factor RSP31	AT3G61860.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g02870.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g029490.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.211630.1.S1_at	A	A1TS	POPTR_0014s09750	POPTR_0014s09750 (11)	scaffold_14:7268869-7269039(-) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.211631.1.S1_at	A	A1TS	POPTR_0014s09750	POPTR_0014s09750 (10)	scaffold_14:7270459-7271508(-) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.211633.1.S1_at	A	A1TS	POPTR_0014s09820	POPTR_0014s09820 (11)	scaffold_14:7321263-7321783(+) (11)	NA	NA	NA	AT2G46640.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	NA	NA	Medtr8g029430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211635.1.S1_at	A	A1TS	POPTR_0014s09850	POPTR_0014s09850 (11)	scaffold_14:7374107-7374342(-) (11)	NA	NA	NA	AT4G22290.1	Ubiquitin-specific protease family C19-related protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211636.1.S1_at	A	A1TS	POPTR_0014s09900	POPTR_0014s09900 (11)	scaffold_14:7424427-7424484(+) (11)	NA	P33079	Auxin-induced protein 10A5	AT2G46690.1	SAUR-like auxin-responsive protein family  	LOC_Os10g36703.1	"CPuORF40 - conserved peptide uORF-containing transcript, expressed"	Medtr7g145860.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211636.1.S1_s_at	A	A1TS	POPTR_0014s09900	POPTR_0014s09900 (11)	scaffold_14:7424655-7424991(+) (11)	NA	P33079	Auxin-induced protein 10A5	AT2G46690.1	SAUR-like auxin-responsive protein family  	LOC_Os10g36703.1	"CPuORF40 - conserved peptide uORF-containing transcript, expressed"	Medtr7g145860.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211637.1.S1_at	A	A1TS	POPTR_0014s09910	POPTR_0014s09910 (11)	scaffold_14:7428717-7429160(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211639.1.S1_at	A	A1TS	POPTR_0014s09960	POPTR_0014s09960 (11)	scaffold_14:7473586-7474221(-) (11)	NA	NA	NA	AT1G01180.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g34320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211640.1.S1_at	A	A1TS	POPTR_0014s09980	POPTR_0014s09980 (11)	scaffold_14:7484854-7486006(+) (11)	NA	Q5M757	Probable S-acyltransferase At4g00840	AT4G00840.1	DHHC-type zinc finger family protein 	LOC_Os07g28460.1	"transposon protein, putative, unclassified, expressed"	Medtr4g024940.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.211641.1.S1_at	A	A1TS	POPTR_0014s09990	POPTR_0014s09990 (11)	scaffold_14:7487586-7487846(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211643.1.S1_at	A	A1TS	POPTR_0014s10020	POPTR_0014s10020 (11)	scaffold_14:7505677-7506793(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211644.1.S1_at	A	A1TS	POPTR_0014s10050	POPTR_0014s10050 (11)	scaffold_14:7520642-7521830(-) (11)	NA	O04905	Uridylate kinase	AT5G26667.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53790.1	"adenylate kinase, putative, expressed"	Medtr8g009290.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0019205|""nucleobase, nucleoside, nucleotide kinase activity""||GO:0005524|ATP binding"	NA
PtpAffx.211645.1.S1_at	A	A1TS	POPTR_0014s10060	POPTR_0014s10060 (11)	scaffold_14:7536347-7536902(-) (11)	NA	Q84WP6	NAC domain-containing protein 43	AT2G46770.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g02300.1	"no apical meristem protein, putative, expressed"	Medtr4g041220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211646.1.S1_at	A	A1TS	POPTR_0014s10070	POPTR_0014s10070 (11)	scaffold_14:7554275-7554833(-) (11)	NA	NA	NA	AT3G61920.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64700.1); Has 77 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr8g018700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211648.1.S1_at	A	A1TS	POPTR_0014s10090	POPTR_0014s10090 (11)	scaffold_14:7575279-7575587(+) (11)	NA	Q76LC6	RNA-binding protein 24	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	CU179634_3.1	RNA-binding region RNP-1 (RNA recognition motif) CU179634.6 7913-3383 H EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.211648.1.S1_x_at	A	A1TS	POPTR_0014s10090	POPTR_0014s10090 (11)	scaffold_14:7575279-7575620(+) (11)	NA	Q76LC6	RNA-binding protein 24	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	CU179634_3.1	RNA-binding region RNP-1 (RNA recognition motif) CU179634.6 7913-3383 H EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.211649.1.S1_at	A	A1MS	POPTR_0014s10110	POPTR_0014s10110 (10)	scaffold_14:7581859-7582512(+) (10)	NA	Q9SYK1	Pentatricopeptide repeat-containing protein At1g05600	AT1G05600.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr5g049980.1	Intermediate filament protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211650.1.S1_at	A	A1TS	POPTR_0014s10115	POPTR_0014s10115 (11)	scaffold_14:7585867-7586184(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211651.1.S1_at	A	A1TS	POPTR_0014s10130	POPTR_0014s10130 (11)	scaffold_14:7600854-7601274(+) (11)	NA	Q0P5W1	Vacuolar protein sorting-associated protein 8 homolog	AT4G00800.1	transducin family protein / WD-40 repeat family protein 	LOC_Os02g03220.1	"protein binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211652.1.S1_at	A	A1TS	POPTR_0014s10150	POPTR_0014s10150 (11)	scaffold_14:7610740-7611263(-) (11)	NA	Q8LDU5	"Pentatricopeptide repeat-containing protein At4g01400, mitochondrial"	AT4G01400.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink). 	LOC_Os09g36230.1	PPR repeat containing protein	Medtr7g146110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211653.1.S1_at	A	A1TS	POPTR_0014s10210	POPTR_0014s10210 (11)	scaffold_14:7657356-7658801(-) (11)	NA	Q8W013	Caffeic acid 3-O-methyltransferase	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr7g146180.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.211654.1.S1_at	A	A1TS	POPTR_0014s10230	POPTR_0014s10230 (11)	scaffold_14:7676460-7678401(-) (11)	NA	Q9ZWQ9	Flavonol synthase/flavanone 3-hydroxylase	AT4G10490.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.211655.1.S1_at	A	A1TS	POPTR_0014s10230	POPTR_0014s10230 (11)	scaffold_14:7678698-7679188(-) (11)	NA	Q9ZWQ9	Flavonol synthase/flavanone 3-hydroxylase	AT4G10490.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.211656.1.S1_at	A	A1TS	POPTR_0014s10270	POPTR_0014s10270 (11)	scaffold_14:7690726-7691439(-) (11)	NA	P87248	Serine/threonine-protein kinase ATG1	AT3G61960.1	Protein kinase superfamily protein 	LOC_Os03g02980.2	"CAMK_CAMK_like_ULKh_APGy.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g144060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211657.1.S1_at	A	A1TS	POPTR_0014s10290	POPTR_0014s10290 (11)	scaffold_14:7726070-7726240(+) (11)	NA	O82799	B3 domain-containing transcription factor NGA1	AT2G46870.1	AP2/B3-like transcriptional factor family protein 	LOC_Os03g02900.1	"B3 DNA binding domain containing protein, expressed"	AC233685_81.1	Transcriptional factor B3 AC233685.2 344120-341990 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.211657.1.S1_s_at	A	A2TS	POPTR_0002s18260	POPTR_0002s18260 (11)//POPTR_0014s10290 (11)	scaffold_14:7725926-7726201(+) (11)//scaffold_2:14240834-14241109(+) (11)	NA	O82799	B3 domain-containing transcription factor NGA1	AT2G46870.1	AP2/B3-like transcriptional factor family protein 	LOC_Os03g02900.1	"B3 DNA binding domain containing protein, expressed"	AC233685_81.1	Transcriptional factor B3 AC233685.2 344120-341990 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.211658.1.S1_s_at	A	A1TS	POPTR_0014s10310	POPTR_0014s10310 (11)	scaffold_14:7741007-7741548(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211659.1.S1_s_at	A	A1TS	POPTR_0014s10320	POPTR_0014s10320 (11)	scaffold_14:7745371-7745981(-) (11)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.21166.1.S1_at	A	A1TS	POPTR_0014s06300	POPTR_0014s06300 (11)	scaffold_14:4800175-4800639(-) (11)	NA	P17407	21 kDa protein	AT4G00080.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.211660.1.S1_s_at	A	A3TS	POPTR_0014s10330	POPTR_0014s10360 (9)//POPTR_0014s10350 (9)//POPTR_0014s10330 (9)	scaffold_14:7750848-7751288(-) (10)//scaffold_14:7756252-7756692(-) (10)//scaffold_14:7761412-7761852(-) (10)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.3	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211661.1.S1_at	A	A1TS	POPTR_0014s10380	POPTR_0014s10380 (10)	scaffold_14:7773113-7773819(-) (10)	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT5G54130.2	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC233657_18.1	Calcium-binding EF-hand; Endonuclease/exonuclease/phosphatase AC233657.1 101749-97143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211662.1.S1_at	A	A1TS	POPTR_0014s10490	POPTR_0014s10490 (11)	scaffold_14:7823324-7824251(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211663.1.S1_at	A	A1TS	POPTR_0014s10510	POPTR_0014s10510 (11)	scaffold_14:7832968-7833504(+) (11)	NA	Q9BQ70	Transcription factor 25	AT2G46900.1	"CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink). "	LOC_Os09g33970.1	expressed protein	AC233662_22.1	Protein of unknown function DUF654 AC233662.1 96596-103118 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211664.1.S1_at	A	A1MS	POPTR_0014s10550	POPTR_0014s10550 (11)	scaffold_14:7865669-7867189(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211665.1.S1_at	A	A1TS	POPTR_0014s10570	POPTR_0014s10570 (11)	scaffold_14:7879419-7879592(-) (11)	NA	Q8L5J1	"Mannan endo-1,4-beta-mannosidase 4"	AT1G02310.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr1g103540.1	"Mannan endo-1,4-beta-mannosidase 4 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211666.1.S1_at	A	A1TS	POPTR_0014s10590	POPTR_0014s10590 (11)	scaffold_14:7886581-7887376(-) (11)	NA	NA	NA	AT5G03050.1	unknown protein; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g01840.1	"knotted 1-binding protein 36, putative"	Medtr1g103500.1	"knotted 1-binding protein 36, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211667.1.S1_at	A	A1TS	POPTR_0014s10610	POPTR_0014s10610 (11)	scaffold_14:7896086-7898762(-) (11)	NA	Q8RWN7	Protein phosphatase 2C 32	AT2G46920.2	Protein phosphatase 2C family protein 	LOC_Os03g25600.2	"protein phosphatase 2C, putative, expressed"	Medtr8g102940.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211669.1.S1_at	A	A1TS	POPTR_0014s10660	POPTR_0014s10660 (11)	scaffold_14:7930705-7931522(-) (11)	NA	NA	NA	AT2G46940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits to 141 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g18220.1	expressed protein	Medtr7g134270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211669.1.S1_x_at	A	A1TS	POPTR_0014s10660	POPTR_0014s10660 (11)	scaffold_14:7930705-7931522(-) (11)	NA	NA	NA	AT2G46940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits to 141 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g18220.1	expressed protein	Medtr7g134270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211670.1.S1_at	A	A1TS	POPTR_0014s10690	POPTR_0014s10690 (11)	scaffold_14:7980299-7981515(-) (11)	NA	NA	NA	AT2G46950.1	"cytochrome P450, family 709, subfamily B, polypeptide 2 "	LOC_Os03g25500.1	"cytochrome P450 72A1, putative, expressed"	Medtr8g045120.2	"E-class P450, group I "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211671.1.S1_at	A	A1TS	POPTR_0014s10700	POPTR_0014s10700 (9)	scaffold_14:7986569-7987081(-) (9)	NA	Q8L5W8	Transcription factor PIL1	AT2G46970.1	phytochrome interacting factor 3-like 1 	LOC_Os01g18290.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g103000.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.211672.1.S1_at	A	A1TS	POPTR_0014s10710	POPTR_0014s10710 (11)	scaffold_14:7994696-7996859(-) (11)	NA	NA	NA	AT2G46980.2	unknown protein; Has 3995 Blast hits to 3325 proteins in 374 species: Archae - 19; Bacteria - 205; Metazoa - 2201; Fungi - 364; Plants - 149; Viruses - 22; Other Eukaryotes - 1035 (source: NCBI BLink). 	LOC_Os10g26560.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211673.1.S1_s_at	A	A1TS	POPTR_0014s10720	POPTR_0014s10720 (11)	scaffold_14:8005639-8007173(+) (11)	NA	P55826	"Protoporphyrinogen oxidase, chloroplastic"	AT4G01690.1	Flavin containing amine oxidoreductase family 	LOC_Os01g18320.1	"protoporphyrinogen oxidase, chloroplast precursor, putative, expressed"	Medtr8g142180.1	Protoporphyrinogen oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.211674.1.S1_at	A	A1TS	POPTR_0014s10770	POPTR_0014s10770 (9)	scaffold_14:8051014-8051261(-) (9)	NA	A7PZL3	Probable polygalacturonase	AT3G62110.1	Pectin lyase-like superfamily protein 	LOC_Os03g61800.2	"polygalacturonase, putative, expressed"	Medtr7g134110.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.211674.1.S1_s_at	A	A1TS	POPTR_0014s10770	POPTR_0014s10770 (11)	scaffold_14:8051075-8051232(-) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G62110.1	Pectin lyase-like superfamily protein 	LOC_Os03g61800.2	"polygalacturonase, putative, expressed"	Medtr7g134110.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.211675.1.S1_at	A	A1TS	POPTR_0014s10790	POPTR_0014s10790 (11)	scaffold_14:8064327-8065645(-) (11)	NA	Q9SYI0	"Protein translocase subunit secA, chloroplastic"	AT4G01800.1	Albino or Glassy Yellow 1 	LOC_Os01g21820.1	"preprotein translocase subunit secA, chloroplast precursor, putative, expressed"	Medtr1g105810.1	SecA protein 	GO:0017038|protein import	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.211676.1.S1_at	A	A1TS	POPTR_0014s10800	POPTR_0014s10800 (11)	scaffold_14:8078152-8079744(-) (11)	NA	O60155	Putative prolyl-tRNA synthetase C19C7.06	AT3G62120.2	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os12g25710.3	"bifunctional aminoacyl-tRNA synthetase, putative, expressed"	Medtr7g134100.1	"Prolyl-tRNA synthetase, bacterial "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.211677.1.S1_at	A	A2TS	POPTR_0014s10810	POPTR_0014s10810 (11)//POPTR_0005s12960 (10)	scaffold_14:8085835-8085956(+) (11)//scaffold_5:9805991-9806112(-) (10)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT2G33580.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g018990.1	"Peptidoglycan-binding LysM; Tyrosine protein kinase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211677.1.S1_x_at	A	A2TS	POPTR_0014s10810	POPTR_0014s10810 (11)//POPTR_0005s12960 (10)	scaffold_14:8085836-8085979(+) (11)//scaffold_5:9805968-9806111(-) (10)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT2G33580.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g018990.1	"Peptidoglycan-binding LysM; Tyrosine protein kinase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211678.1.S1_s_at	A	A1TS	POPTR_0014s10860	POPTR_0014s10860 (11)	scaffold_14:8104784-8105193(-) (11)	NA	O80725	ABC transporter B family member 4	AT2G47000.1	ATP binding cassette subfamily B4 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.211679.1.S1_s_at	A	A2TS	POPTR_0010s04600	POPTR_0010s04600 (11)//POPTR_0228s00220 (11)	scaffold_10:5722432-5722602(+) (11)//scaffold_228:26039-26209(+) (11)//scaffold_3:12877189-12877352(+) (10)	POPTR_0003s12220 (6)	NA	NA	AT1G67900.3	Phototropic-responsive NPH3 family protein 	LOC_Os06g08550.1	"BTBN14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr5g034190.1	NPH3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211680.1.S1_at	A	A1TS	POPTR_0014s10870	POPTR_0014s10870 (11)	scaffold_14:8118292-8119003(-) (11)	NA	Q9FWX7	ABC transporter B family member 11	AT1G02520.1	P-glycoprotein 11 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.211681.1.S1_at	A	A1TS	POPTR_0014s10900	POPTR_0014s10900 (11)	scaffold_14:8138123-8140034(+) (11)	NA	Q9S6Z8	"Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic"	AT4G01840.1	Ca2+ activated outward rectifying K+ channel 5 	LOC_Os09g12790.1	"potassium channel protein, putative, expressed"	Medtr7g134030.1	Ion transport 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211681.1.S1_s_at	A	A2TS	POPTR_0002s18870	POPTR_0014s10900 (11)//POPTR_0002s18870 (11)	scaffold_14:8138084-8140063(+) (11)//scaffold_2:14785522-14787153(+) (11)	NA	Q9S6Z8	"Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic"	AT4G01840.1	Ca2+ activated outward rectifying K+ channel 5 	LOC_Os09g12790.1	"potassium channel protein, putative, expressed"	Medtr7g134030.1	Ion transport 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211682.1.S1_at	A	A1TS	POPTR_0014s10910	POPTR_0014s10910 (11)	scaffold_14:8144134-8144497(+) (11)	NA	NA	NA	AT1G49920.1	MuDR family transposase 	LOC_Os06g42640.3	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.211683.1.S1_x_at	A	A1MS	POPTR_0014s10920	POPTR_0014s10920 (11)	scaffold_14:8149200-8149378(-) (11)	NA	NA	NA	AT1G75250.2	RAD-like 6 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr1g105920.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211684.1.S1_at	A	A1TS	POPTR_0014s10930	POPTR_0014s10930 (11)	scaffold_14:8152097-8153216(-) (11)	NA	Q2RWE1	Peptide chain release factor 1	AT2G47020.1	Peptide chain release factor 1 	LOC_Os05g19630.2	"peptide chain release factor protein, putative, expressed"	Medtr7g133970.1	Peptide chain release factor 1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
PtpAffx.211685.1.S1_at	A	A1TS	POPTR_0014s10960	POPTR_0014s10960 (11)	scaffold_14:8181873-8182190(+) (11)	NA	Q9S7P5	Squamosa promoter-binding-like protein 12	AT3G60030.1	squamosa promoter-binding protein-like 12 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.211686.1.S1_at	A	A1TS	POPTR_0014s10970	POPTR_0014s10970 (11)	scaffold_14:8187623-8188082(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT5G33340.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g37550.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr5g088240.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211687.1.S1_at	A	A1TS	POPTR_0014s10990	POPTR_0014s10990 (11)	scaffold_14:8194604-8195179(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211689.1.S1_at	A	A1TS	POPTR_0014s11030	POPTR_0014s11030 (11)	scaffold_14:8226161-8226305(+) (11)	NA	Q8LC45	Probable xyloglucan endotransglucosylase/hydrolase protein 33	AT1G10550.1	xyloglucan:xyloglucosyl transferase 33 	LOC_Os10g02770.1	"glycosyl hydrolases family 16, putative, expressed"	CU633465_9.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal CU633465.7 82577-85450 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.21169.1.S1_at	A	A1TS	POPTR_0011s14280	POPTR_0011s14280 (11)	scaffold_11:16740871-16741287(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g068530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211690.1.S1_at	A	A1MS	POPTR_0014s11100	POPTR_0014s11100 (11)	scaffold_14:8265129-8265456(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211691.1.S1_at	A	A1TS	POPTR_0014s11110	POPTR_0014s11110 (11)	scaffold_14:8270977-8271780(+) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT4G01890.1	Pectin lyase-like superfamily protein 	LOC_Os01g19170.1	"polygalacturonase, putative, expressed"	Medtr7g133530.1	"Ribosome-binding factor A; Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.211692.1.S1_at	A	A1TS	POPTR_0014s11130	POPTR_0014s11130 (11)	scaffold_14:8288809-8289440(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211693.1.S1_at	A	A1TS	POPTR_0014s11140	POPTR_0014s11140 (9)	scaffold_14:8289569-8293254(-) (10)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211695.1.S1_at	A	A1TS	POPTR_0014s11160	POPTR_0014s11160 (11)	scaffold_14:8309858-8310707(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211696.1.S1_at	A	A1TS	POPTR_0014s11170	POPTR_0014s11170 (11)	scaffold_14:8311344-8311643(-) (11)	NA	NA	NA	AT4G01897.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); Has 763 Blast hits to 763 proteins in 180 species: Archae - 0; Bacteria - 351; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). 	NA	NA	Medtr7g133460.1	Protein of unknown function DUF952 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211698.1.S1_at	A	A1TS	POPTR_0014s11190	POPTR_0014s11190 (11)	scaffold_14:8323758-8324261(+) (11)	NA	Q680H3	Pentatricopeptide repeat-containing protein At2g25580	AT2G25580.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g53610.1	"selenium-binding protein, related, putative, expressed"	Medtr5g045520.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211699.1.S1_at	A	A1TS	POPTR_0014s11220	POPTR_0014s11220 (11)	scaffold_14:8336653-8337908(+) (11)	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os05g06700.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
PtpAffx.211699.1.S1_x_at	A	A1TS	POPTR_0014s11220	POPTR_0014s11220 (11)	scaffold_14:8336660-8337908(+) (11)	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os05g06700.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
PtpAffx.211700.1.S1_at	A	A1TS	POPTR_0746s00210	POPTR_0746s00210 (11)	scaffold_14:8363169-8363210(-) (11)//scaffold_746:3420-3461(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211700.1.S1_s_at	A	A1TS	POPTR_0746s00210	POPTR_0746s00210 (11)	scaffold_14:8362877-8363183(-) (11)//scaffold_746:3128-3434(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211701.1.S1_at	A	A1TS	POPTR_0014s11250	POPTR_0014s11250 (11)	scaffold_14:8368762-8371539(-) (11)	NA	Q9XHM5	Gibberellin 2-beta-dioxygenase 2	AT1G02400.1	gibberellin 2-oxidase 6 	LOC_Os01g55240.1	"gibberellin 2-beta-dioxygenase, putative, expressed"	Medtr1g106260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.211702.1.S1_at	A	A1TS	POPTR_0014s11310	POPTR_0014s11310 (11)	scaffold_14:8412125-8413269(+) (11)	NA	NA	NA	AT1G26540.1	Agenet domain-containing protein 	LOC_Os11g19730.1	expressed protein	Medtr2g037560.1	SH3; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.211703.1.S1_at	A	A1TS	POPTR_0014s11310	POPTR_0014s11310 (11)	scaffold_14:8418072-8418529(+) (11)	NA	NA	NA	AT1G26540.1	Agenet domain-containing protein 	LOC_Os11g19730.1	expressed protein	Medtr2g037560.1	SH3; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.211704.1.S1_at	A	A1TS	POPTR_0014s11330	POPTR_0014s11330 (10)	scaffold_14:8430084-8430529(-) (11)	NA	NA	NA	AT1G02380.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g106390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211706.1.S1_at	A	A1TS	POPTR_0014s11340	POPTR_0014s11340 (11)	scaffold_14:8436798-8437951(-) (11)	NA	NA	NA	AT3G62330.1	Zinc knuckle (CCHC-type) family protein 	LOC_Os01g14920.1	"zinc knuckle family protein, putative, expressed"	Medtr7g133280.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.211707.1.S1_at	A	A1TS	POPTR_0014s11360	POPTR_0014s11360 (11)	scaffold_14:8456450-8456488(-) (11)	NA	O22901	Transcription factor bHLH151	AT2G47270.1	sequence-specific DNA binding transcription factors;transcription regulators 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211707.1.S1_s_at	A	A1TS	POPTR_0014s11360	POPTR_0014s11360 (11)	scaffold_14:8456247-8456447(-) (11)	NA	O22901	Transcription factor bHLH151	AT2G47270.1	sequence-specific DNA binding transcription factors;transcription regulators 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211708.1.S1_at	A	A1TS	POPTR_0014s11370	POPTR_0014s11370 (11)	scaffold_14:8465687-8466190(-) (11)	NA	Q93XK2	Stachyose synthase	AT4G01970.1	stachyose synthase 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr4g136550.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211709.1.S1_at	A	A1TS	POPTR_0014s11400	POPTR_0014s11400 (10)	scaffold_14:8488175-8488331(+) (10)	NA	NA	NA	AT2G47300.2	ribonuclease Ps 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211709.1.S1_x_at	A	A1TS	POPTR_0014s11400	POPTR_0014s11400 (11)	scaffold_14:8488175-8488331(+) (11)	NA	NA	NA	AT2G47300.2	ribonuclease Ps 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211710.1.S1_at	A	A1TS	POPTR_0014s11420	POPTR_0014s11420 (11)	scaffold_14:8491022-8491361(-) (11)	NA	Q9FZ24	"Pentatricopeptide repeat-containing protein At1g02370, mitochondrial"	AT1G02370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g25410.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g106520.1	Asparaginase/glutaminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211711.1.S1_at	A	A1TS	POPTR_0014s11430	POPTR_0014s11430 (11)	scaffold_14:8499976-8501832(+) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT4G02010.1	Protein kinase superfamily protein 	LOC_Os01g14932.1	"NAK-like ser/thr protein kinase, putative, expressed"	Medtr7g133110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211711.1.S1_s_at	A	A1TS	POPTR_0014s11430	POPTR_0014s11430 (11)	scaffold_14:8500376-8501783(+) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT4G02010.1	Protein kinase superfamily protein 	LOC_Os01g14932.1	"NAK-like ser/thr protein kinase, putative, expressed"	Medtr7g133110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211712.1.S1_at	A	A1TS	POPTR_0014s11440	POPTR_0014s11440 (11)	scaffold_14:8506228-8506549(+) (11)	NA	NA	NA	AT1G02550.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os11g45220.1	"IWS1 homolog A, putative, expressed"	Medtr1g106560.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.211714.1.S1_at	A	A1TS	POPTR_0014s11460	POPTR_0014s11460 (11)	scaffold_14:8511666-8512029(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211715.1.S1_at	A	A1TS	POPTR_0014s11470	POPTR_0014s11470 (11)	scaffold_14:8518200-8519198(+) (11)	NA	NA	NA	AT2G47350.1	HIT zinc finger ;PAPA-1-like conserved region 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211717.1.S1_at	A	A1TS	POPTR_0014s11510	POPTR_0014s11510 (11)	scaffold_14:8544536-8544859(+) (11)	NA	Q8GXW1	DELLA protein RGL2	AT3G03450.1	RGA-like 2 	LOC_Os11g31100.1	"gibberellin response modulator protein, putative"	Medtr2g038340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211718.1.S1_at	A	A1TS	POPTR_0014s11530	POPTR_0014s11530 (10)	scaffold_14:8555985-8556453(-) (10)	NA	NA	NA	AT3G62390.1	TRICHOME BIREFRINGENCE-LIKE 6 	LOC_Os03g19470.1	"proteins of unknown function domain containing protein, expressed"	Medtr7g133010.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211719.1.S1_s_at	A	A1TS	POPTR_0014s11570	POPTR_0014s11570 (11)	scaffold_14:8571642-8572368(-) (11)	NA	Q8VZF3	"Probable glutamyl endopeptidase, chloroplastic"	AT2G47390.1	Prolyl oligopeptidase family protein 	LOC_Os03g19410.1	"OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g132980.1	"Peptidase S9, prolyl oligopeptidase active site region "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.211720.1.S1_at	A	A1TS	POPTR_0014s11600	POPTR_0014s11600 (10)	scaffold_14:8597693-8598559(+) (10)	NA	Q8MSY4	Protein fat-free homolog	AT4G02030.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os03g52770.1	expressed protein	Medtr1g106780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211721.1.S1_at	A	A1TS	POPTR_0014s11620	POPTR_0014s11620 (10)	scaffold_14:8617332-8618484(+) (11)	NA	Q8WWQ0	PH-interacting protein	AT2G47410.2	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g106820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211722.1.S1_at	A	A1MS	POPTR_0014s11620	POPTR_0014s11620 (11)	scaffold_14:8619736-8620117(+) (11)	NA	Q8WWQ0	PH-interacting protein	AT2G47410.2	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g106820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211723.1.S1_at	A	A1MS	POPTR_0014s11620	POPTR_0014s11620 (10)	scaffold_14:8621960-8622285(+) (10)	NA	Q8WWQ0	PH-interacting protein	AT2G47410.2	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g106820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211724.1.S1_s_at	A	A1TS	POPTR_0014s11650	POPTR_0014s11650 (11)	scaffold_14:8636957-8637202(+) (11)	POPTR_0014s11660 (6)	Q9LZP3	"Pentatricopeptide repeat-containing protein At3g62470, mitochondrial"	AT3G62470.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g28720.1	"PPR repeat containing protein, expressed"	Medtr1g137270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211725.1.S1_s_at	A	A2TS	POPTR_0008s19530	POPTR_0008s19530 (11)//POPTR_0014s11660 (11)	scaffold_14:8638229-8639127(+) (11)//scaffold_8:13458775-13459677(+) (11)	NA	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.1	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.211727.1.S1_at	A	A1TS	POPTR_0014s11690	POPTR_0014s11690 (11)	scaffold_14:8670161-8671757(+) (11)	NA	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.1	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.211728.1.S1_at	A	A2TS	POPTR_0014s11720	POPTR_0852s00200 (11)//POPTR_0014s11720 (11)	scaffold_14:8687707-8688289(-) (11)//scaffold_852:2492-3074(+) (11)	NA	NA	NA	AT4G02090.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 132 Blast hits to 132 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g19260.1	expressed protein	Medtr1g106960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211729.1.S1_at	A	A1TS	POPTR_0014s11750	POPTR_0014s11750 (11)	scaffold_14:8722317-8722736(-) (11)	NA	O04251	BRCT domain-containing protein At4g02110	AT4G02110.1	transcription coactivators 	LOC_Os03g19190.1	"TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed"	Medtr1g107030.1	"BRCT; Zinc finger, FYVE/PHD-type "	NA	NA	GO:0005622|intracellular
PtpAffx.211730.1.S1_at	A	A1TS	POPTR_0014s11820	POPTR_0014s11820 (11)	scaffold_14:8763053-8763458(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211731.1.S1_at	A	A1TS	POPTR_0014s11830	POPTR_0014s11830 (11)	scaffold_14:8773478-8773686(+) (11)	NA	Q54V77	CTP synthase	AT4G02120.1	CTP synthase family protein 	LOC_Os12g36950.1	"CTP synthase, putative, expressed"	Medtr1g107220.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.211732.1.S1_at	A	A1TS	POPTR_0014s11860	POPTR_0014s11860 (11)	scaffold_14:8782210-8782665(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g132720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211733.1.S1_at	A	A1TS	POPTR_0014s11880	POPTR_0014s11880 (11)	scaffold_14:8792134-8792623(-) (11)	NA	Q39265	Zinc finger protein 6	AT1G67030.1	zinc finger protein 6 	LOC_Os06g10470.1	ZOS6-02 - C2H2 zinc finger protein	Medtr2g038950.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.211734.1.S1_at	A	A1TS	POPTR_0014s11890	POPTR_0014s11890 (11)	scaffold_14:8807784-8810127(-) (11)	NA	Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G47900.1	Protein of unknown function (DUF1624) 	LOC_Os05g06360.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr1g107540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211735.1.S1_at	A	A1TS	POPTR_0014s11900	POPTR_0014s11900 (10)	scaffold_14:8818355-8818910(+) (11)	NA	Q9STW8	Endoglucanase 21	AT4G24260.1	glycosyl hydrolase 9A3 	LOC_Os03g21210.1	"endoglucanase, putative, expressed"	Medtr2g034060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211736.1.S1_at	A	A1TS	POPTR_0014s11910	POPTR_0014s11910 (11)	scaffold_14:8821915-8822278(-) (11)	NA	Q16773	Kynurenine--oxoglutarate transaminase 1	AT1G77670.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os10g34350.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g107550.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.211738.1.S1_at	A	A1TS	POPTR_0014s11940	POPTR_0014s11940 (11)	scaffold_14:8838154-8838623(+) (11)	NA	Q9FJ10	GATA transcription factor 16	AT5G49300.1	GATA transcription factor 16 	LOC_Os03g61570.2	expressed protein	Medtr7g138200.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.211739.1.S1_at	A	A1MS	POPTR_0014s11960	POPTR_0014s11960 (9)	scaffold_14:8842546-8843032(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211740.1.S1_at	A	A1TS	POPTR_0014s12000	POPTR_0014s12000 (11)	scaffold_14:8882236-8882734(-) (11)	NA	Q9SRW9	Cellulose synthase-like protein D5	AT1G02730.1	cellulose synthase-like D5 	LOC_Os12g36890.1	"CSLD4 - cellulose synthase-like family D, expressed"	Medtr7g132520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.211740.1.S1_s_at	A	A2TS	POPTR_0002s20130	POPTR_0014s12000 (11)//POPTR_0002s20130 (11)	scaffold_14:8882206-8882709(-) (11)//scaffold_2:16081357-16081860(-) (11)	NA	Q9SRW9	Cellulose synthase-like protein D5	AT1G02730.1	cellulose synthase-like D5 	LOC_Os12g36890.1	"CSLD4 - cellulose synthase-like family D, expressed"	Medtr7g132520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.211741.1.S1_at	A	A1TS	POPTR_0014s12010	POPTR_0014s12010 (11)	scaffold_14:8887985-8888626(-) (11)	NA	NA	NA	AT4G20300.1	Protein of unknown function (DUF1639) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211742.1.S1_at	A	A1TS	POPTR_0014s12020	POPTR_0014s12020 (11)	scaffold_14:8895291-8895606(+) (11)	NA	Q8GZ17	COBRA-like protein 7	AT4G16120.1	COBRA-like protein-7 precursor 	LOC_Os03g18910.1	"COBRA-like protein 7 precursor, putative, expressed"	Medtr5g005810.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211743.1.S1_at	A	A1TS	POPTR_0014s12030	POPTR_0014s12030 (11)	scaffold_14:8898098-8898608(-) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	LOC_Os03g12350.4	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211746.1.S1_at	A	A1TS	POPTR_0014s12065	POPTR_0014s12065 (11)	scaffold_14:8929244-8929522(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211747.1.S1_at	A	A1MS	POPTR_0014s12070	POPTR_0014s12070 (11)	scaffold_14:8929732-8930129(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211748.1.S1_s_at	A	A3TS	POPTR_0014s12100	POPTR_0014s12120 (11)//POPTR_0014s12100 (11)//POPTR_0014s12130 (11)	scaffold_14:8950889-8951059(+) (11)//scaffold_14:8956268-8960936(+) (11)//scaffold_14:8960914-8968131(+) (11)	NA	NA	NA	AT2G47540.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr1g107960.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211748.1.S1_x_at	A	A1TS	POPTR_0014s12100	POPTR_0014s12100 (11)	scaffold_14:8950877-8951341(+) (11)//scaffold_14:8951048-8968400(+) (9)	POPTR_0014s12120 (7)//POPTR_0014s12130 (6)	NA	NA	AT2G47540.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr1g107960.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211749.1.S1_s_at	A	A4TS	POPTR_0014s12100	POPTR_0014s12120 (11)//POPTR_0014s12110 (11)//POPTR_0014s12100 (11)//POPTR_0014s12130 (11)	scaffold_14:8951373-8951864(+) (11)//scaffold_14:8956630-8957120(+) (11)//scaffold_14:8961288-8961778(+) (11)//scaffold_14:8968486-8968976(+) (11)	NA	NA	NA	AT2G47540.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr1g107960.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211751.1.S1_s_at	A	A1TS	POPTR_0014s12140	POPTR_0014s12140 (11)	scaffold_14:8972031-8972613(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211752.1.S1_at	A	A1TS	POPTR_0014s12170	POPTR_0014s12170 (11)	scaffold_14:8997344-8997500(-) (11)	NA	O81416	Endoglucanase 17	AT4G02290.1	glycosyl hydrolase 9B13 	LOC_Os01g21070.1	"endoglucanase, putative, expressed"	Medtr1g108080.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.211752.1.S1_x_at	A	A1TS	POPTR_0014s12170	POPTR_0014s12170 (11)	scaffold_14:8997344-8997716(-) (11)	NA	O81416	Endoglucanase 17	AT4G02290.1	glycosyl hydrolase 9B13 	LOC_Os01g21070.1	"endoglucanase, putative, expressed"	Medtr1g108080.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.211754.1.S1_at	A	A1TS	POPTR_0014s12220	POPTR_0014s12220 (11)	scaffold_14:9032941-9033102(+) (11)	NA	Q9LXX6	Probable exocyst complex component 6	AT4G02350.1	exocyst complex component sec15B 	LOC_Os01g24950.2	"exocyst complex component 6, putative, expressed"	Medtr1g107350.1	Exocyst complex subunit Sec15-like 	GO:0006904|vesicle docking during exocytosis	NA	GO:0000145|exocyst
PtpAffx.211755.1.S1_at	A	A1TS	POPTR_0014s12230	POPTR_0014s12230 (11)	scaffold_14:9037485-9037942(+) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT4G02370.1	"Protein of unknown function, DUF538 "	LOC_Os05g29900.1	expressed protein	Medtr1g108140.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211756.1.S1_at	A	A1TS	POPTR_0014s12290	POPTR_0014s12290 (11)	scaffold_14:9071612-9073947(+) (11)	NA	Q11207	Poly [ADP-ribose] polymerase 2	AT4G02390.1	poly(ADP-ribose) polymerase 	LOC_Os01g24940.1	"poly synthetase 2-A, putative, expressed"	Medtr1g108250.1	DNA-binding SAP; NAD+ ADP-ribosyltransferase 	GO:0044260|cellular macromolecule metabolic process||GO:0006471|protein amino acid ADP-ribosylation	GO:0003676|nucleic acid binding||GO:0003950|NAD+ ADP-ribosyltransferase activity	NA
PtpAffx.211757.1.S1_at	A	A1TS	POPTR_0014s12300	POPTR_0014s12300 (11)	scaffold_14:9087531-9088665(+) (11)	NA	P87137	Uncharacterized protein C57A7.06	AT4G02400.1	U3 ribonucleoprotein (Utp) family protein 	LOC_Os03g22320.1	"utp14 protein, putative, expressed"	Medtr8g068330.1	Utp14 protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.211758.1.S1_at	A	A1TS	POPTR_0014s12310	POPTR_0014s12310 (11)	scaffold_14:9096021-9097887(+) (11)	NA	Q9M350	Gamma-tubulin complex component 4 homolog	AT3G53760.1	GAMMA-TUBULIN COMPLEX PROTEIN 4 	LOC_Os05g06260.1	"Spc97 / Spc98 family protein, putative, expressed"	Medtr1g108310.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
PtpAffx.211759.1.S1_x_at	A	A1TS	POPTR_0014s12380	POPTR_0014s12380 (11)	scaffold_14:9135124-9135614(-) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.211760.1.S1_s_at	A	A1TS	POPTR_0014s12390	POPTR_0014s12390 (11)	scaffold_14:9153178-9153637(-) (11)	NA	P17407	21 kDa protein	AT3G62820.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr8g068290.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.211761.1.S1_at	A	A1TS	POPTR_0014s12480	POPTR_0014s12480 (11)	scaffold_14:9193046-9193377(+) (11)	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211762.1.S1_at	A	A1TS	POPTR_0014s12500	POPTR_0014s12500 (11)	scaffold_14:9202393-9203441(-) (11)	NA	Q7DM58	ABC transporter C family member 4	AT2G47800.1	multidrug resistance-associated protein 4 	LOC_Os01g25386.1	"multidrug resistance-associated protein, putative, expressed"	Medtr1g108540.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.211763.1.S1_at	A	A1TS	POPTR_1432s00200	POPTR_1432s00200 (9)	scaffold_14:9267695-9269020(-) (11)//scaffold_1432:2515-3868(-) (11)	POPTR_0014s12570 (8)	Q9SW70	Stress-related protein	AT2G47780.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr2g015120.1	Rubber elongation factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211764.1.S1_at	A	A1TS	POPTR_0014s12600	POPTR_0014s12600 (11)	scaffold_14:9276576-9277077(-) (11)	NA	NA	NA	AT2G47770.1	TSPO(outer membrane tryptophan-rich sensory protein)-related 	LOC_Os05g05930.1	"peripheral-type benzodiazepine receptor, putative, expressed"	Medtr7g130420.1	TspO/MBR-related protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.211765.1.S1_at	A	A1MS	POPTR_0014s12640	POPTR_0014s12640 (10)	scaffold_14:9297612-9299242(-) (10)	NA	NA	NA	AT1G02910.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g25600.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g130350.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211766.1.S1_at	A	A1TS	POPTR_0014s12650	POPTR_0014s12650 (11)	scaffold_14:9303955-9304462(-) (11)	NA	NA	NA	AT5G27690.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os05g05820.1	"pro-resilin precursor, putative, expressed"	Medtr8g138820.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.211768.1.S1_at	A	A1TS	POPTR_0014s12710	POPTR_0014s12710 (11)	scaffold_14:9351031-9351289(-) (11)	NA	O82248	Nuclear transcription factor Y subunit B-5	AT2G47810.1	"nuclear factor Y, subunit B5 "	LOC_Os01g70890.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g139040.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.211769.1.S1_at	A	A1TS	POPTR_0014s12720	POPTR_0014s12720 (11)	scaffold_14:9363125-9363664(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT3G50700.1	indeterminate(ID)-domain 2 	LOC_Os02g31890.1	ZOS2-08 - C2H2 zinc finger protein	Medtr7g130150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.211770.1.S1_at	A	A1TS	POPTR_0014s12740	POPTR_0014s12740 (11)	scaffold_14:9388730-9389007(-) (11)	POPTR_0002s21000 (6)	NA	NA	AT3G62900.1	CW-type Zinc Finger 	LOC_Os07g47360.3	"CW-type Zinc Finger, putative, expressed"	Medtr7g130050.1	"Zinc finger, CW-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.211771.1.S1_at	A	A1TS	POPTR_0014s12750	POPTR_0014s12750 (11)	scaffold_14:9402001-9403076(-) (11)	NA	Q54CS8	Peroxisomal biogenesis factor 6	AT1G03000.1	peroxin 6 	LOC_Os04g52690.3	"AAA family ATPase, putative, expressed"	Medtr7g106320.1	"AAA ATPase, central region; L-lactate dehydrogenase "	NA	GO:0005524|ATP binding	NA
PtpAffx.211772.1.S1_at	A	A1TS	POPTR_0014s12760	POPTR_0014s12760 (9)	scaffold_14:9413510-9414178(+) (10)	NA	NA	NA	AT1G74680.1	Exostosin family protein 	LOC_Os08g34020.1	"exostosin family domain containing protein, expressed"	Medtr7g103930.1	Exostosin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211774.1.S1_at	A	A1TS	POPTR_0014s12860	POPTR_0014s12860 (11)	scaffold_14:9476031-9476538(-) (11)	NA	Q7ZV00	OTU domain-containing protein 6B	AT3G62940.3	Cysteine proteinases superfamily protein 	LOC_Os04g52850.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr7g129940.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211776.1.S1_at	A	A1TS	POPTR_0014s12950	POPTR_0014s12950 (10)	scaffold_14:9546686-9547463(+) (11)	NA	NA	NA	AT1G03470.2	Kinase interacting (KIP1-like) family protein 	LOC_Os07g47090.2	"KIP1, putative, expressed"	Medtr7g129820.1	KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211777.1.S1_at	A	A1TS	POPTR_0014s12970	POPTR_0014s12970 (11)	scaffold_14:9552059-9552863(-) (11)	NA	O82261	"Protease Do-like 2, chloroplastic"	AT2G47940.1	DEGP protease 2 	LOC_Os05g05480.1	"OsDegp6 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.211778.1.S1_at	A	A1TS	POPTR_0014s12980	POPTR_0014s12980 (11)	scaffold_14:9565350-9567113(+) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os01g70270.4	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.211779.1.S1_at	A	A1TS	POPTR_0014s13020	POPTR_0014s13020 (11)	scaffold_14:9588384-9588519(+) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.21178.1.S1_at	A	A1TS	POPTR_0001s13640	POPTR_0001s13640 (9)	scaffold_1:10704892-10705438(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211780.1.S1_s_at	A	A1TS	POPTR_0014s13050	POPTR_0014s13050 (11)	scaffold_14:9596974-9597287(+) (11)	NA	NA	NA	AT4G03130.1	BRCT domain-containing DNA repair protein 	LOC_Os05g05440.1	expressed protein	Medtr2g025520.1	BRCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211781.1.S1_s_at	A	A1TS	POPTR_0014s13060	POPTR_0014s13060 (11)	scaffold_14:9599927-9602143(+) (11)	NA	B0G143	Mitochondrial substrate carrier family protein ucpB	AT4G03115.1	Mitochondrial substrate carrier family protein 	LOC_Os12g34870.2	"mitochondrial carrier protein, putative, expressed"	Medtr1g112070.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211782.1.S1_at	A	A1TS	POPTR_0014s13040	POPTR_0014s13040 (11)	scaffold_14:9594193-9594426(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211784.1.S1_at	A	A1TS	POPTR_0014s13060	POPTR_0014s13060 (11)	scaffold_14:9602374-9603962(+) (11)	NA	B0G143	Mitochondrial substrate carrier family protein ucpB	AT4G03115.1	Mitochondrial substrate carrier family protein 	LOC_Os12g34870.2	"mitochondrial carrier protein, putative, expressed"	Medtr1g112070.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211785.1.S1_at	A	A1TS	POPTR_0014s13070	POPTR_0014s13070 (11)	scaffold_14:9613747-9614437(+) (11)	NA	A0JM51	CUGBP Elav-like family member 5	AT4G03110.1	RNA-binding protein-defense related 1 	LOC_Os01g71200.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g136920.1	RNA-binding region RNP-1 (RNA recognition motif); WW/Rsp5/WWP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.211786.1.S1_at	A	A1TS	POPTR_0014s13080	POPTR_0014s13080 (11)	scaffold_14:9622937-9623242(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211787.1.S1_s_at	A	A1TS	POPTR_0014s13090	POPTR_0014s13090 (11)	scaffold_14:9627760-9627970(-) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT4G03100.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g34840.1	"rhoGAP domain containing protein, expressed"	AC235488_25.1	PAK-box/P21-Rho-binding; RhoGAP AC235488.1 117094-119868 F EGN_Mt090430 200	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.211788.1.S1_at	A	A1TS	POPTR_0014s13130	POPTR_0014s13130 (11)	scaffold_14:9649739-9650201(-) (11)	NA	Q5F3D7	U3 small nucleolar RNA-associated protein 15 homolog	AT2G47990.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g12320.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g111180.1	"U3 small nucleolar RNA-associated protein 15 homolog, related "	GO:0006364|rRNA processing||GO:0044260|cellular macromolecule metabolic process	NA	GO:0005730|nucleolus
PtpAffx.211788.1.S1_x_at	A	A1TS	POPTR_0014s13130	POPTR_0014s13130 (11)	scaffold_14:9649739-9650111(-) (11)	NA	Q5F3D7	U3 small nucleolar RNA-associated protein 15 homolog	AT2G47990.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g12320.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g111180.1	"U3 small nucleolar RNA-associated protein 15 homolog, related "	GO:0006364|rRNA processing||GO:0044260|cellular macromolecule metabolic process	NA	GO:0005730|nucleolus
PtpAffx.211789.1.S1_at	A	A1TS	POPTR_0014s13140	POPTR_0014s13140 (11)	scaffold_14:9665796-9666690(+) (11)	NA	NA	NA	AT4G03090.1	sequence-specific DNA binding;sequence-specific DNA binding transcription factors 	LOC_Os05g09630.1	"homeobox domain containing protein, expressed"	Medtr2g114320.1	Homeobox 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21179.1.S1_a_at	A	A1TS	POPTR_0013s12750	POPTR_0013s12750 (11)	scaffold_13:13429754-13429928(-) (11)	NA	O25225	GTP-binding protein TypA/BipA homolog	AT2G31060.2	elongation factor family protein 	LOC_Os01g54910.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.21179.1.S1_at	A	A1TS	POPTR_0013s12750	POPTR_0013s12750 (11)	scaffold_13:13428354-13430519(-) (11)	NA	O25225	GTP-binding protein TypA/BipA homolog	AT2G31060.2	elongation factor family protein 	LOC_Os01g54910.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.21179.2.A1_at	A	A1MS	POPTR_0013s12750	POPTR_0013s12750 (11)	scaffold_13:13429629-13430185(-) (11)	NA	O25225	GTP-binding protein TypA/BipA homolog	AT2G31060.2	elongation factor family protein 	LOC_Os01g54910.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.211790.1.S1_at	A	A1TS	POPTR_0014s13180	POPTR_0014s13180 (11)	scaffold_14:9712666-9714133(+) (11)	NA	O24467	LEC14B homolog	AT4G03020.2	transducin family protein / WD-40 repeat family protein 	LOC_Os05g33710.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g111040.1	"LEC14B homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211792.1.S1_at	A	A1TS	POPTR_0014s13210	POPTR_0014s13210 (11)	scaffold_14:9736521-9736758(-) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G35960.1	Protein kinase family protein 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr2g025900.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211795.1.S1_at	A	A1TS	POPTR_0014s13250	POPTR_0014s13250 (11)	scaffold_14:9767879-9768935(-) (11)	NA	B4GDM7	Probable cytosolic iron-sulfur protein assembly protein Ciao1	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211796.1.S1_at	A	A1TS	POPTR_0014s13260	POPTR_0014s13260 (11)	scaffold_14:9769404-9769975(-) (11)	NA	Q60EY1	Probable indole-3-acetic acid-amido synthetase GH3.6	AT1G23160.1	Auxin-responsive GH3 family protein 	LOC_Os05g05180.2	"OsGH3.6 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr2g096120.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211797.1.S1_s_at	A	A1TS	POPTR_0014s13270	POPTR_0014s13270 (11)	scaffold_14:9776287-9777014(-) (11)	NA	NA	NA	AT2G48030.1	DNAse I-like superfamily protein 	LOC_Os07g45100.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr2g025950.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211798.1.S1_at	A	A1TS	POPTR_0014s13330	POPTR_0014s13330 (11)	scaffold_14:9802902-9803531(-) (11)	NA	Q54S52	Transmembrane protein DDB_G0282801	AT2G48060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os01g29230.1	expressed protein	Medtr1g111510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211799.1.S1_at	A	A1TS	POPTR_0014s13330	POPTR_0014s13330 (10)	scaffold_14:9807723-9808984(-) (11)	NA	Q54S52	Transmembrane protein DDB_G0282801	AT2G48060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os01g29230.1	expressed protein	Medtr1g111510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2118.1.A1_a_at	A	A1TS	POPTR_0002s15080	POPTR_0002s15080 (11)	scaffold_2:11182575-11182703(-) (11)	NA	Q9H8Y5	Ankyrin repeat and zinc finger domain-containing protein 1	AT1G01930.1	zinc finger protein-related 	LOC_Os04g48520.1	"ZOS4-12 - C2H2 zinc finger protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2118.1.A1_at	A	A1TS	POPTR_0002s15080	POPTR_0002s15080 (10)	scaffold_2:11182471-11183079(-) (10)	NA	Q9H8Y5	Ankyrin repeat and zinc finger domain-containing protein 1	AT1G01930.1	zinc finger protein-related 	LOC_Os04g48520.1	"ZOS4-12 - C2H2 zinc finger protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21180.1.S1_s_at	A	A2TS	POPTR_0001s17480	POPTR_0003s05810 (11)//POPTR_0001s17480 (11)	scaffold_1:14268307-14268397(-) (11)//scaffold_3:7192866-7192956(+) (11)	NA	NA	NA	AT1G80280.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g45960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr2g123630.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211801.1.S1_at	A	A1TS	POPTR_0014s13360	POPTR_0014s13360 (10)	scaffold_14:9828983-9829457(-) (10)	NA	NA	NA	AT4G02990.1	Mitochondrial transcription termination factor family protein 	LOC_Os05g33500.1	"mTERF domain containing protein, expressed"	Medtr5g077520.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211802.1.S1_at	A	A1TS	POPTR_0014s13380	POPTR_0014s13380 (11)	scaffold_14:9842154-9842474(-) (11)	NA	NA	NA	AT1G03360.1	ribosomal RNA processing 4 	LOC_Os04g43922.1	"exosome complex exonuclease rrp4, putative, expressed"	Medtr2g110760.1	"Exosome complex exonuclease RRP4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211803.1.S1_at	A	A1TS	POPTR_0014s13400	POPTR_0014s13400 (11)	scaffold_14:9861870-9862391(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211804.1.S1_at	A	A1TS	POPTR_0014s13410	POPTR_0014s13410 (11)	scaffold_14:9869262-9870613(-) (11)	NA	Q6NTT6	Mitochondrial ubiquitin ligase activator of nfkb 1	AT1G63900.1	E3 Ubiquitin ligase family protein 	LOC_Os07g45350.2	"zinc finger, RING-type, putative, expressed"	Medtr1g111550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211804.1.S1_s_at	A	A1TS	POPTR_0014s13410	POPTR_0014s13410 (11)	scaffold_14:9867885-9870590(-) (10)	NA	Q6NTT6	Mitochondrial ubiquitin ligase activator of nfkb 1	AT1G63900.1	E3 Ubiquitin ligase family protein 	LOC_Os07g45350.2	"zinc finger, RING-type, putative, expressed"	Medtr1g111550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211805.1.S1_at	A	A1TS	POPTR_0014s13440	POPTR_0014s13440 (11)	scaffold_14:9907225-9907741(+) (11)	NA	NA	NA	AT2G48110.1	reduced epidermal fluorescence 4 	LOC_Os07g11000.1	"structural constituent of ribosome, putative, expressed"	Medtr2g026520.1	"REF4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211806.1.S1_at	A	A1TS	POPTR_0014s13450	POPTR_0014s13450 (11)	scaffold_14:9909569-9910723(+) (11)	NA	NA	NA	AT2G48120.1	pale cress protein (PAC) 	LOC_Os05g32680.1	"PAC, putative, expressed"	Medtr1g086780.1	"PAC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211807.1.S1_at	A	A1TS	POPTR_0014s13470	POPTR_0014s13470 (11)	scaffold_14:9916098-9916679(+) (11)	POPTR_0014s13480 (7)	NA	NA	AT2G48160.1	Tudor/PWWP/MBT domain-containing protein 	LOC_Os07g46180.1	"PWWP domain containing protein, expressed"	Medtr1g086720.1	PWWP; Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211808.1.S1_at	A	A1TS	POPTR_0014s13500	POPTR_0014s13500 (11)	scaffold_14:9941813-9941965(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211808.1.S1_s_at	A	A1TS	POPTR_0014s13500	POPTR_0014s13500 (11)	scaffold_14:9941913-9942050(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211809.1.S1_at	A	A1MS	POPTR_0014s13530	POPTR_0014s13530 (11)	scaffold_14:9954762-9955156(+) (11)	NA	NA	NA	AT3G63095.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g46210.1	"LTPL2 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	AC233676_41.1	hypothetical protein AC233676.2 159341-159811 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211810.1.S1_at	A	A1TS	POPTR_0014s13570	POPTR_0014s13570 (11)	scaffold_14:9975192-9976581(-) (11)	NA	Q38961	DNA cross-link repair protein SNM1	AT3G26680.3	DNA repair metallo-beta-lactamase family protein 	LOC_Os04g32930.1	"DNA cross-link repair 1A protein, putative, expressed"	Medtr7g099460.1	DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211811.1.S1_at	A	A1TS	POPTR_0014s13580	POPTR_0014s13580 (11)	scaffold_14:9984560-9984629(+) (11)	NA	NA	NA	AT3G26670.3	Protein of unknown function (DUF803) 	LOC_Os02g31874.1	"DUF803 domain containing, putative, expressed"	Medtr3g105270.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211812.1.S1_at	A	A1TS	POPTR_0014s13710	POPTR_0014s13710 (11)	scaffold_14:10049965-10050048(+) (11)	NA	Q9NR19	"Acetyl-coenzyme A synthetase, cytoplasmic"	AT5G36880.2	acetyl-CoA synthetase 	LOC_Os02g32490.1	"AMP-binding enzyme, putative, expressed"	Medtr7g099650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.211814.1.S1_at	A	A1TS	POPTR_0014s13730	POPTR_0014s13730 (11)	scaffold_14:10059197-10063639(-) (11)	NA	Q9USZ2	Uncharacterized protein C11G11.07	AT1G12930.1	ARM repeat superfamily protein 	LOC_Os11g34120.1	"exportin 1, putative"	Medtr7g099720.1	Exportin-1/Importin-beta-like 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.211815.1.S1_at	A	A1MS	POPTR_0014s13770	POPTR_0014s13770 (11)	scaffold_14:10085464-10085604(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211816.1.S1_at	A	A1TS	POPTR_0014s13780	POPTR_0014s13780 (11)	scaffold_14:10087362-10088161(-) (11)	NA	Q94J16	Heat stress transcription factor A-4b	AT4G18880.1	heat shock transcription factor  A4A 	LOC_Os01g54550.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g135910.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.211816.1.S1_s_at	A	A1TS	POPTR_0014s13780	POPTR_0014s13780 (11)	scaffold_14:10087091-10087364(-) (11)	NA	Q94J16	Heat stress transcription factor A-4b	AT4G18880.1	heat shock transcription factor  A4A 	LOC_Os01g54550.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g135910.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.211817.1.S1_at	A	A1TS	POPTR_0014s13800	POPTR_0014s13800 (11)	scaffold_14:10096993-10097475(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g061560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211818.1.S1_at	A	A1TS	POPTR_0014s13860	POPTR_0014s13860 (11)	scaffold_14:10136378-10136765(-) (11)	NA	Q8L4B0	Probable galacturonosyltransferase 15	AT3G58790.1	galacturonosyltransferase 15 	LOC_Os12g38930.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g096780.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.211820.1.S1_at	A	A1TS	POPTR_0014s13960	POPTR_0014s13960 (11)	scaffold_14:10227276-10227951(+) (11)	NA	NA	NA	AT2G42700.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os11g06810.1	expressed protein	Medtr4g109990.1	Sec1-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211821.1.S1_at	A	A1TS	POPTR_0014s14040	POPTR_0014s14040 (11)	scaffold_14:10277575-10281171(-) (11)	NA	Q54PM7	N-acetyl-D-glucosamine kinase	AT1G30540.1	Actin-like ATPase superfamily protein 	LOC_Os07g05380.1	"ATPase BadF/BadG/BcrA/BcrD type, putative, expressed"	Medtr5g097220.1	"ATPase, BadF/BadG/BcrA/BcrD type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211822.1.S1_at	A	A1MA	POPTR_0014s14060	POPTR_0014s14060 (9)	scaffold_14:10297892-10298051(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211823.1.S1_at	A	A1TS	POPTR_0014s14080	POPTR_0014s14080 (11)	scaffold_14:10303698-10305743(-) (11)	NA	Q8GZB6	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4"	AT5G13960.1	SU(VAR)3-9 homolog 4 	LOC_Os01g70220.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr7g097120.1	SET-related region; Histone H3-K9 methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211824.1.S1_at	A	A1TS	POPTR_0014s14090	POPTR_0014s14090 (9)	scaffold_14:10310825-10313372(-) (9)	NA	Q8GZB6	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4"	AT5G13960.1	SU(VAR)3-9 homolog 4 	LOC_Os01g70220.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr7g097130.1	SRA-YDG; Pre-SET 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.211825.1.S1_at	A	A1TS	POPTR_0014s14100	POPTR_0014s14100 (11)	scaffold_14:10323053-10323790(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211826.1.S1_at	A	A1TS	POPTR_0014s14120	POPTR_0014s14120 (11)	scaffold_14:10338064-10338228(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211828.1.S1_at	A	A1TS	POPTR_0014s14140	POPTR_0014s14140 (11)	scaffold_14:10354116-10355563(+) (11)	NA	NA	NA	AT3G19340.1	Protein of unknown function (DUF3754) 	LOC_Os12g29550.1	expressed protein	Medtr7g097260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211829.1.S1_at	A	A1TS	POPTR_0014s14150	POPTR_0014s14150 (11)	scaffold_14:10357141-10357631(-) (11)	NA	Q9S7I6	LRR receptor-like serine/threonine-protein kinase RPK2	AT3G02130.1	receptor-like protein kinase 2 	LOC_Os07g41140.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g097270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211830.1.S1_at	A	A1TS	POPTR_0014s14180	POPTR_0014s14180 (11)	scaffold_14:10381271-10381742(+) (11)	NA	Q9LD18	Potassium transporter 4	AT3G02050.1	K+ uptake transporter 3 	LOC_Os01g70940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.211831.1.S1_at	A	A1TS	POPTR_0014s14190	POPTR_0014s14190 (11)	scaffold_14:10389144-10391394(+) (11)	NA	Q55750	Transcription-repair-coupling factor	AT3G02060.2	"DEAD/DEAH box helicase, putative "	LOC_Os11g32880.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g099370.1	"Haem peroxidase, plant/fungal/bacterial; ATP-requiring DNA helicase RecQ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003700|transcription factor activity||GO:0003684|damaged DNA binding	NA
PtpAffx.211832.1.S1_at	A	A1TS	POPTR_0014s14240	POPTR_0014s14240 (9)	scaffold_14:10424488-10427911(+) (11)	NA	NA	NA	AT1G08660.1	MALE GAMETOPHYTE DEFECTIVE 2 	LOC_Os11g36420.1	"sialyltransferase family domain containing protein, expressed"	Medtr7g097000.1	"Glycosyl transferase, family 29 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211833.1.S1_at	A	A1TS	POPTR_0014s14250	POPTR_0014s14250 (11)	scaffold_14:10429101-10429469(+) (11)	NA	NA	NA	AT3G26740.1	CCR-like 	NA	NA	Medtr7g096990.1	Light regulated Lir1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211835.1.S1_at	A	A1TS	POPTR_0014s14350	POPTR_0014s14350 (11)	scaffold_14:10513504-10513581(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT1G05840.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g27360.1	"aspartic proteinase-like protein 2 precursor, putative, expressed"	Medtr7g021310.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211835.1.S1_s_at	A	A1TS	POPTR_0014s14350	POPTR_0014s14350 (11)	scaffold_14:10513586-10517628(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT1G05840.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g27360.1	"aspartic proteinase-like protein 2 precursor, putative, expressed"	Medtr7g021310.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211836.1.S1_at	A	A1TS	POPTR_0014s14360	POPTR_0014s14360 (11)	scaffold_14:10519902-10521588(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211837.1.S1_at	A	A1TS	POPTR_0014s14390	POPTR_0014s14390 (11)	scaffold_14:10552082-10552511(+) (11)	NA	Q9FFD0	Putative auxin efflux carrier component 8	AT5G16530.1	Auxin efflux carrier family protein 	LOC_Os01g69070.1	"auxin efflux carrier component, putative, expressed"	Medtr7g089430.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.211838.1.S1_at	A	A1TS	POPTR_0014s14440	POPTR_0014s14440 (11)	scaffold_14:10580601-10581042(-) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT3G28040.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os01g72700.1	expressed protein	Medtr7g022110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211840.1.S1_s_at	A	A1TS	POPTR_0014s14480	POPTR_0014s14480 (11)	scaffold_14:10609996-10610547(-) (11)	NA	NA	NA	AT1G10800.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	NA	NA	Medtr7g021900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211842.1.S1_at	A	A1TS	POPTR_0014s14500	POPTR_0014s14500 (11)	scaffold_14:10620183-10620567(-) (11)//scaffold_1820:4534-4918(-) (11)	NA	Q7XJ98	Xyloglucan galactosyltransferase KATAMARI1	AT4G13990.1	Exostosin family protein 	LOC_Os03g05110.1	"xyloglucan galactosyltransferase KATAMARI1, putative, expressed"	Medtr3g104740.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.211843.1.S1_at	A	A1TS	POPTR_0014s14510	POPTR_0014s14510 (11)	scaffold_14:10626314-10626653(+) (11)	NA	Q6ZY51	"Phosphoglucan, water dikinase, chloroplastic"	AT5G26570.1	"catalytics;carbohydrate kinases;phosphoglucan, water dikinases "	LOC_Os12g20150.1	"phosphoglucan, water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation||GO:0005975|carbohydrate metabolic process	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.211844.1.S1_at	A	A1TS	POPTR_0014s14510	POPTR_0014s14510 (9)	scaffold_14:10631930-10633289(+) (10)	NA	Q6ZY51	"Phosphoglucan, water dikinase, chloroplastic"	AT5G26570.1	"catalytics;carbohydrate kinases;phosphoglucan, water dikinases "	LOC_Os12g20150.1	"phosphoglucan, water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation||GO:0005975|carbohydrate metabolic process	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.211845.1.S1_at	A	A1TS	POPTR_0014s14520	POPTR_0014s14520 (11)	scaffold_14:10639036-10640967(-) (11)	NA	NA	NA	AT4G24290.1	MAC/Perforin domain-containing protein 	LOC_Os02g27480.4	"membrane attack complex component/perforin/complement C9, putative, expressed"	Medtr4g147340.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211847.1.S1_at	A	A1TS	POPTR_0014s14560	POPTR_0014s14560 (11)	scaffold_14:10657716-10658284(-) (11)	NA	NA	NA	AT4G29400.1	Protein of unknown function (DUF3531) 	LOC_Os01g37820.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr8g050210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211848.1.S1_at	A	A1TS	POPTR_0014s14570	POPTR_0014s14570 (11)	scaffold_14:10661088-10661660(-) (11)	NA	Q9LN59	Putative wall-associated receptor kinase-like 11	AT1G19390.1	Wall-associated kinase family protein 	LOC_Os10g10130.5	"OsWAK112d - OsWAK receptor-like protein kinase, expressed"	AC147501_3.1	Tyrosine protein kinase AC147501.9 8841-5950 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211849.1.S1_at	A	A1TS	POPTR_0014s14590	POPTR_0014s14590 (11)	scaffold_14:10673506-10674426(-) (11)	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os01g52780.1	"HVA22, putative, expressed"	Medtr5g099090.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211850.1.S1_at	A	A1TS	POPTR_0014s14650	POPTR_0014s14650 (11)	scaffold_14:10716657-10716703(+) (11)	NA	Q9SRT2	Transcription factor bHLH62	AT3G07340.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr8g012630.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.211850.1.S1_s_at	A	A1TS	POPTR_0014s14650	POPTR_0014s14650 (11)	scaffold_14:10716636-10717301(+) (11)	NA	Q9SRT2	Transcription factor bHLH62	AT3G07340.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr8g012630.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.211851.1.S1_at	A	A1TS	POPTR_0014s14660	POPTR_0014s14660 (11)	scaffold_14:10723071-10724522(-) (11)	NA	Q9GYZ0	Kinesin-like protein KIF15	AT3G23670.1	"phragmoplast-associated kinesin-related protein, putative "	LOC_Os02g28850.1	"Kinesin motor domain domain containing protein, expressed"	Medtr3g104360.1	"Kinesin, motor region; Kinesin-related "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.211852.1.S1_at	A	A1MS	POPTR_0009s07260	POPTR_0009s07260 (10)	scaffold_13:13501858-13502337(+) (9)//scaffold_14:10735574-10736053(-) (10)//scaffold_16:13968977-13969457(+) (10)//scaffold_4:7919146-7919616(+) (9)//scaffold_9:6829802-6830282(-) (10)	NA	NA	NA	AT2G26810.3	Putative methyltransferase family protein 	LOC_Os07g44730.2	expressed protein	Medtr1g019870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211853.1.S1_at	A	A1TS	POPTR_0014s14680	POPTR_0014s14680 (11)	scaffold_14:10757055-10757442(+) (11)	NA	Q8L5T9	Cysteine proteinase inhibitor 2	AT2G31980.1	PHYTOCYSTATIN 2 	LOC_Os04g28250.1	"cysteine proteinase inhibitor precursor, putative, expressed"	Medtr3g104370.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.211856.1.S1_at	A	A1TS	POPTR_0014s14860	POPTR_0014s14860 (11)	scaffold_14:10896806-10897394(-) (11)	NA	Q9SIN9	"Phospholipase A1-Ialpha2, chloroplastic"	AT2G31690.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os11g19340.1	"lipase, putative, expressed"	Medtr7g005980.1	"Peptidase S26A, signal peptidase I; Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.211857.1.S1_at	A	A1TS	POPTR_0014s14880	POPTR_0014s14880 (11)	scaffold_14:10923701-10924928(-) (11)	NA	NA	NA	AT1G05790.1	lipase class 3 family protein 	LOC_Os01g67420.1	"lipase, putative, expressed"	Medtr1g147130.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211859.1.S1_at	A	A1TS	POPTR_0014s14930	POPTR_0014s14930 (11)	scaffold_14:10998030-10998820(+) (11)	NA	Q67YI9	Clathrin interactor EPSIN 2	AT2G43160.1	ENTH/VHS family protein 	LOC_Os02g56270.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211861.1.S1_at	A	A1TS	POPTR_0014s14950	POPTR_0014s14950 (11)	scaffold_14:11027197-11027618(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g24390.1	zinc knuckle family protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.211862.1.S1_at	A	A1TS	POPTR_0014s14980	POPTR_0014s14980 (11)	scaffold_14:11034841-11038570(+) (11)	NA	Q0WMN5	Uncharacterized protein At3g49135	AT3G59300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g67370.1	expressed protein	Medtr5g097250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211863.1.S1_at	A	A1TS	POPTR_0014s14990	POPTR_0014s14990 (11)	scaffold_14:11042029-11043964(-) (11)	NA	Q5T1Q4	Solute carrier family 35 member F1	AT3G59340.1	Eukaryotic protein of unknown function (DUF914) 	LOC_Os05g23440.2	"solute carrier family 35 member F1, putative, expressed"	Medtr7g005790.1	"Protein of unknown function DUF914, eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.211864.1.S1_at	A	A1TS	POPTR_0014s15020	POPTR_0014s15020 (11)	scaffold_14:11123043-11124282(-) (11)	NA	P87027	Septum-promoting GTP-binding protein 1	AT3G21700.3	Ras-related small GTP-binding family protein 	LOC_Os07g33850.2	"ras-related protein, putative, expressed"	Medtr4g062100.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.211865.1.S1_at	A	A1TS	POPTR_0014s15150	POPTR_0014s15150 (11)	scaffold_14:11258514-11258948(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g104010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211866.1.S1_at	A	A1TS	POPTR_0014s15160	POPTR_0014s15160 (11)	scaffold_14:11260905-11261290(+) (11)	NA	NA	NA	AT4G38390.1	root hair specific 17 	LOC_Os04g47520.3	"growth regulator related protein, putative, expressed"	Medtr5g106640.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211867.1.S1_at	A	A1TS	POPTR_0014s15170	POPTR_0014s15170 (11)	scaffold_14:11270925-11271182(-) (11)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.211868.1.S1_at	A	A1TS	POPTR_0014s15190	POPTR_0014s15190 (11)	scaffold_14:11291148-11291966(+) (11)	NA	Q9FLM3	Probable S-acyltransferase At5g41060	AT5G41060.1	DHHC-type zinc finger family protein 	LOC_Os08g42620.2	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr1g124850.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.211869.1.S1_at	A	A1TS	POPTR_0014s15270	POPTR_0014s15270 (11)	scaffold_14:11339951-11341134(+) (11)	NA	P79051	ATP-dependent helicase rhp16	AT1G05120.1	Helicase protein with RING/U-box domain 	LOC_Os07g32730.1	"DNA repair protein rhp16, putative, expressed"	Medtr4g064720.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.21187.1.A1_at	A	A1TS	POPTR_0014s17910	POPTR_0014s17910 (9)	scaffold_14:14447714-14448678(-) (9)	NA	NA	NA	AT1G45150.1	unknown protein; Has 219 Blast hits to 202 proteins in 78 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). 	LOC_Os07g39300.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211871.1.S1_at	A	A1TS	POPTR_0014s15310	POPTR_0014s15310 (11)	scaffold_14:11379395-11379531(-) (11)	NA	Q54R82	Mitogen-activated protein kinase kinase kinase A	AT1G05100.1	mitogen-activated protein kinase kinase kinase 18 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr2g104400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211871.1.S1_s_at	A	A1TS	POPTR_0014s15310	POPTR_0014s15310 (11)	scaffold_14:11379558-11379907(-) (11)	NA	Q54R82	Mitogen-activated protein kinase kinase kinase A	AT1G05100.1	mitogen-activated protein kinase kinase kinase 18 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr2g104400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211873.1.S1_at	A	A1TS	POPTR_0014s15350	POPTR_0014s15350 (10)	scaffold_14:11431237-11432742(+) (10)	NA	Q7XUU0	Putative cellulose synthase-like protein H3	AT2G32540.1	cellulose synthase-like B4 	LOC_Os10g20090.1	"CSLH1 - cellulose synthase-like family H, expressed"	Medtr2g104470.1	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211874.1.S1_at	A	A1MS	POPTR_0014s15360	POPTR_0014s15360 (9)	scaffold_14:11441739-11444445(+) (11)	NA	Q5PQL2	Cell differentiation protein RCD1 homolog	AT5G12980.1	"Cell differentiation, Rcd1-like protein "	LOC_Os03g57130.1	expressed protein	Medtr7g018250.1	"Cell differentiation proteins, Rcd1-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211875.1.S1_at	A	A1TS	POPTR_0014s15410	POPTR_0014s15410 (11)	scaffold_14:11476900-11476935(-) (11)	NA	O13067	Condensin complex subunit 2	AT2G32590.1	LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). 	LOC_Os01g34870.1	expressed protein	Medtr2g104510.1	Barren 	GO:0007067|mitosis	NA	GO:0005634|nucleus
PtpAffx.211875.1.S1_s_at	A	A1TS	POPTR_0014s15410	POPTR_0014s15410 (11)	scaffold_14:11474162-11478366(-) (11)	NA	O13067	Condensin complex subunit 2	AT2G32590.1	LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). 	LOC_Os01g34870.1	expressed protein	Medtr2g104510.1	Barren 	GO:0007067|mitosis	NA	GO:0005634|nucleus
PtpAffx.211876.1.S1_at	A	A1TS	POPTR_0014s15420	POPTR_0014s15420 (11)	scaffold_14:11486403-11486481(-) (11)	NA	O32107	Uncharacterized membrane protein yuiD	AT3G21610.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os01g67560.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211877.1.S1_at	A	A1TS	POPTR_0014s15430	POPTR_0014s15430 (11)	scaffold_14:11488512-11489235(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT3G21620.1	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.211877.1.S1_s_at	A	A1TS	POPTR_0014s15430	POPTR_0014s15430 (11)	scaffold_14:11488424-11488620(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT3G21620.1	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.211877.1.S1_x_at	A	A1TS	POPTR_0014s15430	POPTR_0014s15430 (11)	scaffold_14:11488405-11489235(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT3G21620.1	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.211878.1.S1_at	A	A1TS	POPTR_0014s15440	POPTR_0014s15440 (11)	scaffold_14:11502301-11502647(+) (11)	NA	Q339N5	Cellulose synthase-like protein H1	AT2G32530.1	cellulose synthase-like B3 	LOC_Os10g20090.3	"CSLH1 - cellulose synthase-like family H, expressed"	Medtr3g013090.4	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211879.1.S1_at	A	A1TS	POPTR_0014s15450	POPTR_0014s15450 (11)	scaffold_14:11506215-11506622(-) (11)	NA	Q55BK0	Ubiquitin fusion degradation protein 1 homolog	AT4G15420.1	Ubiquitin fusion degradation UFD1 family protein 	LOC_Os01g35040.1	"ZOS1-09 - C2H2 zinc finger protein, expressed"	Medtr5g093620.1	"Ubiquitin fusion degradation protein UFD1; Zinc finger, C2H2-type; Peptidase, archaeal and bacterial C-terminal "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.211882.1.S1_at	A	A1TS	POPTR_0014s15600	POPTR_0014s15600 (11)	scaffold_14:11628522-11629085(+) (11)	NA	NA	NA	AT2G05755.1	Nodulin MtN21 /EamA-like transporter family protein 	NA	NA	Medtr3g110060.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.211883.1.S1_at	A	A1TS	POPTR_0014s15610	POPTR_0014s15610 (11)	scaffold_14:11635208-11636514(+) (11)	NA	Q9SHZ3	Nucleobase-ascorbate transporter 1	AT2G05760.1	Xanthine/uracil permease family protein 	LOC_Os09g15170.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr3g109940.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.211884.1.S1_at	A	A1TS	POPTR_0014s15640	POPTR_0014s15640 (10)	scaffold_14:11661545-11662903(+) (10)	NA	NA	NA	AT2G32970.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. 	LOC_Os02g53210.4	expressed protein	Medtr3g109930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211886.1.S1_at	A	A1TS	POPTR_0014s15670	POPTR_0014s15670 (11)	scaffold_14:11685759-11686420(+) (11)	NA	Q9ZVN6	Clathrin coat assembly protein AP180	AT1G05020.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr3g109770.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.211887.1.S1_s_at	A	A1TS	POPTR_0014s15680	POPTR_0014s15680 (11)	scaffold_14:11697811-11698893(-) (11)	NA	NA	NA	AT2G05810.2	ARM repeat superfamily protein 	LOC_Os09g05030.2	"armadillo/beta-catenin-like repeat family protein, expressed"	Medtr4g124890.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211888.1.S1_at	A	A1TS	POPTR_0014s15690	POPTR_0014s15690 (11)	scaffold_14:11712004-11714136(+) (11)	NA	NA	NA	AT2G31340.1	embryo defective 1381 	LOC_Os09g12500.2	"EMB1381, putative, expressed"	Medtr3g109700.1	"EMB1381, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211890.1.S1_at	A	A1TS	POPTR_0014s15760	POPTR_0014s15760 (11)	scaffold_14:11823521-11824162(+) (11)	NA	Q6YSJ5	Protein argonaute 16	AT2G32940.1	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr3g105930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211892.1.S1_at	A	A1TS	POPTR_0014s15850	POPTR_0014s15850 (11)	scaffold_14:11942371-11942849(+) (11)	NA	B6IST7	Lipid-A-disaccharide synthase	AT2G04560.1	"transferases, transferring glycosyl groups "	LOC_Os01g54900.1	"lipid-A-disaccharide synthase family protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0009245|lipid A biosynthetic process	GO:0008915|lipid-A-disaccharide synthase activity	NA
PtpAffx.211893.1.S1_at	A	A1TS	POPTR_0014s15880	POPTR_0014s15880 (11)	scaffold_14:11965069-11966222(-) (11)	NA	Q8L633	"Ribonuclease Z, chloroplastic"	AT2G04530.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os09g30466.1	"nuclear ribonuclease Z, putative, expressed"	Medtr5g092020.1	"Nuclear ribonuclease Z, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211894.1.S1_at	A	A1TS	POPTR_0014s15920	POPTR_0014s15920 (11)	scaffold_14:12003334-12003784(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G35670.1	IQ-domain 33 	LOC_Os06g40850.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr5g092000.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211896.1.S1_s_at	A	A2TS	POPTR_1178s00200	POPTR_1178s00200 (11)//POPTR_0014s15965 (9)	scaffold_1178:1898-2273(+) (11)//scaffold_14:12041261-12041636(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211898.1.S1_at	A	A1TS	POPTR_0014s15980	POPTR_0014s15980 (11)	scaffold_14:12061449-12061990(-) (11)	NA	NA	NA	AT2G04850.1	Auxin-responsive family protein 	LOC_Os03g09850.1	"auxin-responsive protein-related, putative, expressed"	Medtr5g105320.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211899.1.S1_at	A	A1TS	POPTR_0014s16020	POPTR_0014s16020 (11)	scaffold_14:12091522-12095173(-) (11)	NA	Q9FGK3	Putative MO25-like protein At5g47540	AT5G47540.1	Mo25 family protein 	LOC_Os07g39630.1	"calcium-binding protein, putative, expressed"	Medtr2g030130.1	Mo25-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211900.1.S1_at	A	A1TS	POPTR_0014s16050	POPTR_0014s16050 (11)	scaffold_14:12122499-12122996(-) (11)	NA	NA	NA	AT5G35732.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g064950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211901.1.S1_at	A	A1TS	POPTR_0014s16110	POPTR_0014s16110 (11)	scaffold_14:12184757-12185791(-) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os02g48730.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr3g106340.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
PtpAffx.211902.1.S1_at	A	A1TS	POPTR_0014s16120	POPTR_0014s16120 (11)	scaffold_14:12202652-12204205(+) (11)	NA	Q9FKI0	Fimbrin-like protein 2	AT5G35700.1	fimbrin-like protein 2 	LOC_Os02g48740.1	"fimbrin-like protein 2, putative, expressed"	Medtr5g105790.1	"Actin-binding, actinin-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211903.1.S1_s_at	A	A1TS	POPTR_0014s16130	POPTR_0014s16130 (11)	scaffold_14:12205008-12205866(-) (11)	NA	Q5XIU1	Ankyrin repeat and BTB/POZ domain-containing protein 1	AT2G04740.1	ankyrin repeat family protein 	LOC_Os06g21330.1	"ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed"	Medtr3g106440.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.211904.1.S1_at	A	A1TS	POPTR_0014s16140	POPTR_0014s16140 (11)	scaffold_14:12212731-12213933(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g008730.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211905.1.S1_at	A	A1TS	POPTR_0014s16160	POPTR_0014s16160 (11)	scaffold_14:12248901-12249368(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g143100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211907.1.S1_at	A	A1TS	POPTR_0014s16180	POPTR_0014s16180 (9)	scaffold_14:12293517-12294174(+) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os07g32412.2	"transposon protein, putative, unclassified, expressed"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211908.1.S1_at	A	A1TS	POPTR_0014s16190	POPTR_0014s16190 (11)	scaffold_14:12296959-12297678(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT5G48130.1	Phototropic-responsive NPH3 family protein 	LOC_Os07g39530.1	"BTBN16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr7g080500.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.211909.1.S1_at	A	A1TS	POPTR_0014s16210	POPTR_0014s16210 (11)	scaffold_14:12305234-12305508(-) (11)	NA	O70279	Protein DGCR14	AT3G07790.1	DGCR14-related 	LOC_Os06g30710.3	"DGCR14, putative, expressed"	Medtr5g105210.1	"Protein DGCR14 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211911.1.S1_s_at	A	A1TS	POPTR_0014s16230	POPTR_0014s16230 (11)	scaffold_14:12317301-12317609(-) (11)	NA	Q9LDL7	Scarecrow-like transcription factor PAT1	AT5G48150.2	GRAS family transcription factor 	LOC_Os07g39470.1	"gibberellin response modulator protein, putative, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211912.1.S1_at	A	A1TS	POPTR_0014s16260	POPTR_0014s16260 (11)	scaffold_14:12334181-12334897(-) (11)	NA	Q9C5U2	Histidine kinase 2	AT5G35750.1	histidine kinase 2 	LOC_Os10g21810.1	"histidine kinase, putative, expressed"	Medtr5g105120.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.211913.1.S1_at	A	A1TS	POPTR_0014s16280	POPTR_0014s16280 (11)	scaffold_14:12368433-12369435(-) (11)	NA	P36183	Endoplasmin homolog	AT3G07770.1	HEAT SHOCK PROTEIN 89.1 	LOC_Os12g32986.1	"heat shock protein, putative, expressed"	Medtr5g105030.2	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.211913.1.S1_s_at	A	A1TS	POPTR_0014s16280	POPTR_0014s16280 (11)	scaffold_14:12368482-12369537(-) (11)	NA	P36183	Endoplasmin homolog	AT3G07770.1	HEAT SHOCK PROTEIN 89.1 	LOC_Os12g32986.1	"heat shock protein, putative, expressed"	Medtr5g105030.2	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.211914.1.S1_at	A	A1TS	POPTR_0014s16280	POPTR_0014s16280 (10)	scaffold_14:12372470-12373260(-) (11)	NA	P36183	Endoplasmin homolog	AT3G07770.1	HEAT SHOCK PROTEIN 89.1 	LOC_Os12g32986.1	"heat shock protein, putative, expressed"	Medtr5g105030.2	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.211915.1.S1_at	A	A1MS	POPTR_0014s16310	POPTR_0014s16310 (11)	scaffold_14:12412293-12412454(-) (11)	NA	NA	NA	AT2G05120.2	"Nucleoporin, Nup133/Nup155-like "	LOC_Os03g12450.1	"nucleoporin, putative, expressed"	Medtr5g104960.1	Nup133 nucleoporin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211916.1.S1_s_at	A	A1TS	POPTR_0014s16330	POPTR_0014s16330 (11)	scaffold_14:12432328-12433001(-) (11)	NA	Q54YP4	Vacuolar protein sorting-associated protein 11 homolog	AT2G05170.1	vacuolar protein sorting 11 	LOC_Os04g31390.1	"vacuolar protein sorting-associated protein 11, putative, expressed"	Medtr1g024450.1	"Zinc finger, RING-type "	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	NA
PtpAffx.211917.1.S1_at	A	A1TS	POPTR_0014s16350	POPTR_0014s16350 (11)	scaffold_14:12463113-12463255(-) (11)	NA	B1HUD0	Chaperone protein dnaJ	AT2G05230.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os02g30620.3	"dnaJ domain containing protein, expressed"	Medtr5g104830.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.211918.1.S1_at	A	A1TS	POPTR_0014s16360	POPTR_0014s16360 (11)	scaffold_14:12474377-12474803(-) (11)	NA	Q9LUB6	F-box protein SNE	AT5G48170.1	F-box family protein 	LOC_Os03g10040.1	"OsFBX77 - F-box domain containing protein, expressed"	Medtr5g104810.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211919.1.S1_at	A	A1TS	POPTR_0014s16390	POPTR_0014s16390 (11)	scaffold_14:12495867-12496353(+) (11)	NA	Q9SZ10	"Pentatricopeptide repeat-containing protein At4g26680, mitochondrial"	AT4G26680.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g21920.1	"PPR repeat containing protein, expressed"	Medtr7g107370.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211920.1.S1_at	A	A1TS	POPTR_0014s16440	POPTR_0014s16440 (11)	scaffold_14:12510461-12510997(-) (11)	NA	Q9FKH1	Transcriptional regulator STERILE APETALA	AT5G35770.1	Transducin/WD40 repeat-like superfamily protein 	NA	NA	Medtr5g104710.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211921.1.S1_at	A	A1TS	POPTR_0014s16450	POPTR_0014s16450 (11)	scaffold_14:12517393-12517643(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211922.1.S1_at	A	A1TS	POPTR_0014s16460	POPTR_0014s16460 (11)	scaffold_14:12534386-12534921(+) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G41040.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr3g150860.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.211923.1.S1_at	A	A1TS	POPTR_0014s16470	POPTR_0014s16470 (11)	scaffold_14:12537863-12538048(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211924.1.S1_at	A	A1TS	POPTR_0014s16480	POPTR_0014s16480 (11)	scaffold_14:12541153-12541926(-) (11)	NA	Q43727	"Glucose-6-phosphate 1-dehydrogenase 1, chloroplastic"	AT5G35790.1	glucose-6-phosphate dehydrogenase 1 	LOC_Os03g29950.1	"glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed"	Medtr7g022440.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
PtpAffx.211926.1.S1_at	A	A1TS	POPTR_0014s16500	POPTR_0014s16500 (11)	scaffold_14:12574766-12575300(-) (11)	NA	Q9LKR4	Putative protein FAR1-RELATED SEQUENCE 10	AT5G28530.1	FAR1-related sequence 10 	LOC_Os04g36590.1	"transposon protein, putative, unclassified, expressed"	Medtr5g080530.1	"RNA-directed DNA polymerase (Reverse transcriptase); FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.211927.1.S1_at	A	A1TS	POPTR_0014s16510	POPTR_0014s16510 (11)	scaffold_14:12583173-12584040(-) (11)	NA	Q9SK08	LOB domain-containing protein 11	AT2G28500.1	LOB domain-containing protein 11 	LOC_Os03g17810.1	"DUF260 domain containing protein, putative, expressed"	Medtr2g111250.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211928.1.S1_at	A	A1TS	POPTR_0014s16570	POPTR_0014s16570 (11)	scaffold_14:12646746-12647284(+) (11)	NA	NA	NA	AT2G04480.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35870.1); Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g106110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211929.1.S1_at	A	A1TS	POPTR_0014s16600	POPTR_0014s16600 (10)	scaffold_14:12692104-12692529(+) (11)	NA	P05499	ATP synthase subunit a	ATMG00410.1	ATPase subunit 6-1 	LOC_Os01g58010.1	"ATP synthase, A subunit family protein, putative"	NA	NA	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0045263|""proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.211929.1.S1_s_at	A	A1TS	POPTR_0014s16600	POPTR_0014s16600 (11)	scaffold_14:12692231-12692558(+) (11)	NA	P05499	ATP synthase subunit a	ATMG00410.1	ATPase subunit 6-1 	LOC_Os01g58010.1	"ATP synthase, A subunit family protein, putative"	NA	NA	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0045263|""proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.211930.1.S1_at	A	A1TS	POPTR_0014s16610	POPTR_0014s16610 (11)	scaffold_14:12699296-12699869(+) (11)	NA	Q9SU13	Fasciclin-like arabinogalactan protein 2	AT4G12730.1	FASCICLIN-like arabinogalactan 2 	LOC_Os08g23180.1	"fasciclin-like arabinogalactan protein 8 precursor, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211931.1.S1_at	A	A1TS	POPTR_0014s16620	POPTR_0014s16620 (10)	scaffold_14:12712829-12713462(+) (11)	NA	Q9SBK6	Jasmonate O-methyltransferase	AT5G66430.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g48770.1	"SAM dependent carboxyl methyltransferase, putative, expressed"	Medtr3g162650.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.211932.1.S1_at	A	A1TS	POPTR_0014s16640	POPTR_0014s16640 (11)	scaffold_14:12733520-12734376(-) (11)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g141000.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.211933.1.S1_at	A	A1MS	POPTR_0014s16650	POPTR_0014s16650 (11)	scaffold_14:12744958-12745117(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211934.1.S1_at	A	A1TS	POPTR_0014s16650	POPTR_0014s16650 (11)	scaffold_14:12745688-12745840(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211936.1.S1_at	A	A1TS	POPTR_0014s16750	POPTR_0014s16750 (11)	scaffold_14:12832864-12833987(-) (11)	NA	Q9SJD4	Long chain acyl-CoA synthetase 8	AT2G04350.2	AMP-dependent synthetase and ligase family protein 	LOC_Os05g25310.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g106650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.211936.1.S1_x_at	A	A1TS	POPTR_0014s16750	POPTR_0014s16750 (10)	scaffold_14:12832836-12833987(-) (10)	NA	Q9SJD4	Long chain acyl-CoA synthetase 8	AT2G04350.2	AMP-dependent synthetase and ligase family protein 	LOC_Os05g25310.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g106650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.211937.1.S1_at	A	A1TS	POPTR_0014s16790	POPTR_0014s16790 (11)	scaffold_14:12860177-12860637(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g081850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211938.1.S1_at	A	A1TS	POPTR_0014s16800	POPTR_0014s16800 (11)	scaffold_14:12867800-12867843(+) (11)	NA	Q8GWV5	U-box domain-containing protein 3	AT4G12710.1	ARM repeat superfamily protein 	LOC_Os01g02200.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g077930.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211938.1.S1_s_at	A	A1TS	POPTR_0014s16800	POPTR_0014s16800 (11)	scaffold_14:12867645-12868121(+) (11)	NA	Q8GWV5	U-box domain-containing protein 3	AT4G12710.1	ARM repeat superfamily protein 	LOC_Os01g02200.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g077930.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211939.1.S1_at	A	A1TS	POPTR_0014s16810	POPTR_0014s16810 (11)	scaffold_14:12874479-12874522(+) (11)	NA	NA	NA	AT2G04280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os10g31810.1	expressed protein	Medtr5g077980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211939.1.S1_s_at	A	A1TS	POPTR_0014s16810	POPTR_0014s16810 (11)	scaffold_14:12873946-12874474(+) (11)	NA	NA	NA	AT2G04280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os10g31810.1	expressed protein	Medtr5g077980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211940.1.S1_at	A	A1TS	POPTR_0014s16820	POPTR_0014s16820 (11)	scaffold_14:12875949-12878521(-) (11)	NA	P44443	Ribonuclease E	AT2G04270.5	RNAse E/G-like 	LOC_Os08g23430.1	"starch binding domain containing protein, putative, expressed"	Medtr5g078000.1	"Haem peroxidase, plant/fungal/bacterial; Glycoside hydrolase, starch-binding; Ribonuclease E and G; "	GO:0005975|carbohydrate metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.211941.1.S1_at	A	A1TS	POPTR_0014s16890	POPTR_0014s16890 (11)	scaffold_14:13021513-13022125(-) (11)	NA	Q8GUM4	Uncharacterized membrane protein At3g27390	AT4G12680.1	unknown protein; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g19630.2	"steroid nuclear receptor, ligand-binding, putative, expressed"	Medtr3g106920.1	"Steroid nuclear receptor, ligand-binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211942.1.S1_at	A	A1TS	POPTR_0014s16900	POPTR_0014s16900 (11)	scaffold_14:13030595-13031163(+) (11)	NA	Q9SSE8	Probable glycosyltransferase At3g07620	AT3G07620.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr3g109550.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.211944.1.S1_at	A	A1TS	POPTR_0014s16910	POPTR_0014s16910 (11)	scaffold_14:13042201-13042983(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211945.1.S1_at	A	A1TS	POPTR_0014s16920	POPTR_0014s16920 (11)	scaffold_14:13049545-13050089(+) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G03795.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr1g073800.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.211946.1.S1_s_at	A	A1TS	POPTR_0014s16950	POPTR_0014s16950 (11)	scaffold_14:13080864-13081736(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211947.1.S1_s_at	A	A1TS	POPTR_0014s16980	POPTR_0014s16980 (11)	scaffold_14:13118839-13119867(-) (11)	NA	Q6F4F5	Cytochrome P450 724B1	AT3G50660.1	Cytochrome P450 superfamily protein 	LOC_Os04g39430.1	"cytochrome P450, putative, expressed"	Medtr7g032660.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.211948.1.S1_at	A	A1TS	POPTR_0014s17040	POPTR_0014s17040 (11)	scaffold_14:13220995-13222551(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT4G13640.1	Homeodomain-like superfamily protein 	LOC_Os09g12750.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211950.1.S1_at	A	A1TS	POPTR_0014s17080	POPTR_0014s17080 (11)	scaffold_14:13254709-13255339(+) (11)	NA	Q15034	Probable E3 ubiquitin-protein ligase HERC3	AT5G48330.2	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os02g10380.1	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr5g020520.1	"Probable E3 ubiquitin-protein ligase HERC2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211951.1.S1_at	A	A1TS	POPTR_0014s17110	POPTR_0014s17110 (11)	scaffold_14:13262192-13263921(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211952.1.S1_at	A	A1TS	POPTR_0014s17120	POPTR_0014s17120 (11)	scaffold_14:13266581-13267534(-) (11)	NA	Q99P21	A/G-specific adenine DNA glycosylase	AT4G12740.1	HhH-GPD base excision DNA repair family protein 	LOC_Os12g10850.1	"hhH-GPD superfamily base excision DNA repair protein, putative"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0003677|DNA binding||GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	GO:0005622|intracellular
PtpAffx.211954.1.S1_at	A	A1MS	POPTR_0014s17150	POPTR_0014s17150 (9)	scaffold_14:13303358-13304156(+) (9)	NA	NA	NA	AT4G12760.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g34480.1	expressed protein	Medtr3g163640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211955.1.S1_at	A	A1TS	POPTR_0014s17140	POPTR_0014s17140 (11)	scaffold_14:13292459-13293356(-) (11)	NA	NA	NA	AT4G12750.1	Homeodomain-like transcriptional regulator 	LOC_Os01g48180.1	"DDT domain containing protein, putative, expressed"	Medtr4g161050.1	DDT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211956.1.S1_at	A	A1TS	POPTR_0014s17150	POPTR_0014s17150 (11)	scaffold_14:13302799-13305213(+) (11)	NA	NA	NA	AT4G12760.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g34480.1	expressed protein	Medtr3g163640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211957.1.S1_at	A	A1TS	POPTR_0014s17160	POPTR_0014s17160 (11)	scaffold_14:13306391-13308810(-) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT4G12770.2	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g36180.1	"auxilin, putative, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211958.1.S1_at	A	A1TS	POPTR_0014s17240	POPTR_0014s17240 (10)	scaffold_14:13375777-13376125(+) (11)	NA	Q9STN5	"Uncharacterized protein At4g08330, chloroplastic"	AT4G08330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g39060.1	expressed protein	Medtr3g100830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211959.1.S1_at	A	A1TS	POPTR_0014s17240	POPTR_0014s17240 (11)	scaffold_14:13376505-13377036(+) (11)	NA	Q9STN5	"Uncharacterized protein At4g08330, chloroplastic"	AT4G08330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g39060.1	expressed protein	Medtr3g100830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211960.1.S1_at	A	A1TS	POPTR_0014s17270	POPTR_0014s17270 (11)	scaffold_14:13395491-13396410(+) (11)	NA	NA	NA	AT5G48340.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g67170.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211961.1.S1_at	A	A1TS	POPTR_0014s17290	POPTR_0014s17290 (11)	scaffold_14:13424312-13424686(+) (11)	NA	NA	NA	AT5G12230.1	MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g41962.4	"nucleolar protein NOP5, putative, expressed"	AC233651_17.1	"TRAF3-interacting protein 1, related AC233651.1 53447-51580 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211963.1.S1_at	A	A1TS	POPTR_0014s17310	POPTR_0014s17310 (11)	scaffold_14:13444622-13444857(+) (11)	NA	Q9SE97	Formin-like protein 1	AT3G25500.1	formin homology 1 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr7g092450.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211963.1.S1_x_at	A	A1TS	POPTR_0014s17310	POPTR_0014s17310 (11)	scaffold_14:13444622-13445097(+) (11)	NA	Q9SE97	Formin-like protein 1	AT3G25500.1	formin homology 1 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr7g092450.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211965.1.S1_at	A	A1TS	POPTR_0014s17340	POPTR_0014s17340 (11)	scaffold_14:13482560-13483124(+) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G43840.2	UDP-glycosyltransferase 74 F1 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g092470.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211966.1.S1_at	A	A1TS	POPTR_0014s17370	POPTR_0014s17370 (11)	scaffold_14:13516893-13517263(+) (11)	NA	NA	NA	AT5G48390.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g66690.1	"ZIP4/SPO22, putative, expressed"	Medtr7g092410.1	"ZIP4/SPO22, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211967.1.S1_at	A	A1TS	POPTR_0014s17380	POPTR_0014s17380 (11)	scaffold_14:13518608-13520227(+) (11)	NA	Q9H0Y0	Ubiquitin-like-conjugating enzyme ATG10	AT3G07525.2	autophagocytosis-associated family protein 	LOC_Os12g32210.1	"autophagy-related protein 10, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211968.1.S1_at	A	A1TS	POPTR_0014s17420	POPTR_0014s17420 (9)	scaffold_14:13547900-13549389(-) (11)	NA	NA	NA	AT4G12840.1	Protein of unknown function (DUF707) 	LOC_Os01g69050.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g005180.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211969.1.S1_at	A	A1TS	POPTR_0014s17450	POPTR_0014s17450 (11)	scaffold_14:13634971-13635489(-) (11)	POPTR_0001s12170 (7)	NA	NA	AT3G47630.2	CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	AC235671_16.2	Mitochondrial matrix Mmp37 AC235671.2 66695-71943 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211971.1.S1_at	A	A1TS	POPTR_0014s17520	POPTR_0014s17520 (11)	scaffold_14:13758456-13759195(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211972.1.S1_at	A	A1TS	POPTR_0014s17530	POPTR_0014s17530 (11)	scaffold_14:13763056-13763880(-) (11)	NA	Q67XL4	"Uncharacterized CRM domain-containing protein At3g25440, chloroplastic"	AT3G25440.1	RNA-binding CRS1 / YhbY (CRM) domain protein 	LOC_Os04g41550.1	"CRS1/YhbY domain containing protein, putative, expressed"	Medtr1g068790.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.211973.1.S1_at	A	A1TS	POPTR_0014s17620	POPTR_0014s17620 (11)	scaffold_14:13882729-13883473(-) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211974.1.S1_at	A	A1TS	POPTR_0014s17630	POPTR_0014s17630 (11)	scaffold_14:13901139-13901616(-) (11)	NA	Q39266	Zinc finger protein 7	AT1G24625.1	zinc finger protein 7 	NA	NA	Medtr3g087170.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211975.1.S1_at	A	A1TS	POPTR_0014s17640	POPTR_0014s17640 (9)	scaffold_14:13911767-13912018(-) (11)	NA	Q6C8M8	Sterol 3-beta-glucosyltransferase	AT3G07020.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g04254.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr4g023830.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.211976.1.S1_at	A	A1TS	POPTR_0014s17680	POPTR_0014s17680 (11)	scaffold_14:13947674-13948714(+) (11)	NA	Q54BN3	Probable replication factor C subunit 3	AT5G27740.1	ATPase family associated with various cellular activities (AAA)  	LOC_Os10g42400.1	expressed protein	Medtr3g163740.1	"DNA polymerase III clamp loader subunit, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211977.1.S1_at	A	A1TS	POPTR_0014s17690	POPTR_0014s17690 (11)	scaffold_14:13949488-13950305(-) (11)	NA	NA	NA	AT5G50740.3	Heavy metal transport/detoxification superfamily protein  	LOC_Os02g30650.1	"heavy metal-associated domain containing protein, expressed"	AC225519_21.1	Heavy metal transport/detoxification protein AC225519.5 92933-94445 H EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.211979.1.S1_at	A	A1TS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13976223-13976351(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.211981.1.S1_at	A	A1TS	POPTR_0014s17740	POPTR_0014s17740 (11)	scaffold_14:14006502-14008418(-) (11)	NA	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT5G46570.1	BR-signaling kinase 2 	LOC_Os10g42110.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.211983.1.S1_at	A	A1TS	POPTR_0014s17810	POPTR_0014s17810 (11)	scaffold_14:14180691-14181889(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211984.1.S1_at	A	A1TS	POPTR_0014s17820	POPTR_0014s17820 (11)	scaffold_14:14188151-14188396(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211985.1.S1_at	A	A1TS	POPTR_0014s17830	POPTR_0014s17830 (11)	scaffold_14:14190284-14190791(-) (11)	NA	Q9M1C7	ABC transporter C family member 9	AT3G60160.1	multidrug resistance-associated protein 9 	LOC_Os04g49900.1	"ABC transporter family protein, putative, expressed"	Medtr5g034390.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.211986.1.S1_at	A	A1TS	POPTR_0014s17840	POPTR_0014s17840 (11)	scaffold_14:14218069-14218976(-) (11)	NA	Q8QHA5	DNA2-like helicase	AT1G08840.1	"DNA replication helicase, putative "	LOC_Os04g49860.1	"DNA2 - Putative DNA replication helicase 2 protein, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004003|ATP-dependent DNA helicase activity	NA
PtpAffx.211987.1.S1_at	A	A1MS	POPTR_0014s17840	POPTR_0014s17840 (10)	scaffold_14:14228698-14229054(-) (10)	NA	Q8QHA5	DNA2-like helicase	AT1G08840.1	"DNA replication helicase, putative "	LOC_Os04g49860.1	"DNA2 - Putative DNA replication helicase 2 protein, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004003|ATP-dependent DNA helicase activity	NA
PtpAffx.211988.1.S1_at	A	A1TS	POPTR_0014s17860	POPTR_0014s17860 (11)	scaffold_14:14361934-14363692(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211991.1.S1_at	A	A1TS	POPTR_0014s17950	POPTR_0014s17950 (11)	scaffold_14:14539045-14540701(+) (11)	NA	NA	NA	AT3G56870.1	unknown protein; Has 204 Blast hits to 201 proteins in 58 species: Archae - 0; Bacteria - 10; Metazoa - 72; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). 	LOC_Os03g39740.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211992.1.S1_at	A	A1TS	POPTR_0014s17960	POPTR_0014s17960 (9)	scaffold_14:14541656-14541849(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211993.1.S1_at	A	A1TS	POPTR_0014s17980	POPTR_0014s17980 (11)	scaffold_14:14569426-14570006(+) (11)	NA	NA	NA	AT1G75160.1	Protein of unknown function (DUF620) 	LOC_Os01g55795.1	expressed protein	Medtr5g019760.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211994.1.S1_at	A	A1TS	POPTR_0014s18000	POPTR_0014s18000 (10)	scaffold_14:14594768-14595631(-) (11)	NA	NA	NA	AT5G42950.1	GYF domain-containing protein 	LOC_Os07g04530.1	"GYF domain containing protein, putative, expressed"	Medtr7g017760.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211997.1.S1_s_at	A	A2TS	POPTR_0005s16475	POPTR_0011s05750 (11)//POPTR_0005s16475 (11)	scaffold_11:5743319-5743424(-) (11)//scaffold_14:14718583-14718688(-) (11)//scaffold_5:13266947-13267052(-) (11)	NA	NA	NA	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	AC235754_9.1	Protein kinase AC235754.1 32277-34503 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211999.1.S1_at	A	A1TS	POPTR_0014s19110	POPTR_0014s19110 (11)	scaffold_14:16987705-16988435(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2120.1.S1_at	A	A3TS	POPTR_0019s13990	POPTR_0019s13990 (11)//POPTR_1008s00230 (10)//POPTR_0019s13980 (10)	scaffold_1008:2573-7172(-) (11)//scaffold_1008:6959-7285(-) (9)//scaffold_19:14775922-14784575(-) (11)//scaffold_19:14779912-14786787(-) (11)//scaffold_19:14784303-14786834(-) (10)	POPTR_0019s13960 (6)//POPTR_0019s13940 (6)	NA	NA	AT4G10265.1	Wound-responsive family protein 	LOC_Os04g54240.1	"wound induced protein, putative, expressed"	Medtr2g095480.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2120.2.S1_a_at	A	A1TS	POPTR_0019s14010	POPTR_0019s14010 (11)	scaffold_19:14788582-14795430(-) (11)//scaffold_19:14795225-14798208(-) (11)	POPTR_0019s14000 (8)	NA	NA	AT4G10265.1	Wound-responsive family protein 	LOC_Os04g54240.1	"wound induced protein, putative, expressed"	Medtr2g095480.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2120.3.S1_at	A	A1MS	POPTR_0019s14020	POPTR_0019s14020 (9)	scaffold_19:14788473-14797726(-) (10)	POPTR_0019s14030 (6)	NA	NA	AT4G10265.1	Wound-responsive family protein 	LOC_Os04g54240.1	"wound induced protein, putative, expressed"	Medtr2g095480.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212001.1.S1_s_at	A	A1TS	POPTR_0014s19310	POPTR_0014s19310 (11)	scaffold_14:16828270-16828682(+) (11)//scaffold_14:17204432-17204844(+) (11)//scaffold_14:17325727-17326139(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212002.1.S1_at	A	A1TS	POPTR_0014s19050	POPTR_0014s19050 (11)	scaffold_14:16771489-16772394(-) (11)	NA	P97929	Breast cancer type 2 susceptibility protein homolog	AT5G01630.1	BRCA2-like B 	LOC_Os01g07110.1	"BRCA2 repeat family protein, expressed"	Medtr3g106000.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212003.1.S1_at	A	A1TS	POPTR_0014s19040	POPTR_0014s19040 (11)	scaffold_14:16749560-16750841(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212004.1.S1_at	A	A1TS	POPTR_0014s19030	POPTR_0014s19030 (9)	scaffold_14:16747903-16748444(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212005.1.S1_at	A	A1TS	POPTR_0014s19020	POPTR_0014s19020 (9)	scaffold_14:16727082-16727547(+) (10)	NA	Q6ZRS2	Helicase SRCAP	AT3G24870.1	"Helicase/SANT-associated, DNA binding protein "	LOC_Os08g08000.1	"DNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212006.1.S1_at	A	A1MS	POPTR_0014s19010	POPTR_0014s19010 (10)	scaffold_14:16719311-16720430(+) (10)	NA	Q6NLW5	Protein XRI1	AT5G48720.2	x-ray induced transcript 1 	LOC_Os01g68930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212007.1.S1_at	A	A1TS	POPTR_0014s19000	POPTR_0014s19000 (11)	scaffold_14:16667860-16668067(+) (11)	NA	NA	NA	AT1G74260.1	purine biosynthesis 4 	NA	NA	Medtr3g104150.1	"AIR synthase related protein, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212008.1.S1_at	A	A1TS	POPTR_0014s18980	POPTR_0014s18980 (10)	scaffold_14:16639730-16641046(-) (11)	NA	Q969N2	GPI transamidase component PIG-T	AT3G07140.1	GPI transamidase component Gpi16 subunit family protein 	LOC_Os11g28980.1	"GPI transamidase component Gpi16 subunit family protein, putative, expressed"	NA	NA	NA	NA	GO:0042765|GPI-anchor transamidase complex||GO:0071212|subsynaptic reticulum
PtpAffx.212009.1.S1_at	A	A2TS	POPTR_0014s18950	POPTR_0014s18950 (11)//POPTR_0014s18970 (11)	scaffold_14:16560615-16560774(-) (11)//scaffold_14:16588152-16588311(+) (11)	NA	Q9SRT3	Probable xyloglucan glycosyltransferase 6	AT3G07330.1	Cellulose-synthase-like C6 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr8g012660.1	"Glycosyl transferase, family 2; Inorganic pyrophosphatase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212010.1.S1_s_at	A	A1TS	POPTR_0014s18950	POPTR_0014s18950 (10)	scaffold_14:16557469-16557892(-) (11)	NA	Q9SRT3	Probable xyloglucan glycosyltransferase 6	AT3G07330.1	Cellulose-synthase-like C6 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr8g012660.1	"Glycosyl transferase, family 2; Inorganic pyrophosphatase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212012.1.S1_at	A	A1TS	POPTR_0014s18910	POPTR_0014s18910 (11)	scaffold_14:16514874-16515234(-) (11)	NA	Q9FI80	Pentatricopeptide repeat-containing protein At5g48910	AT5G48910.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g60690.1	"pentatricopeptide, putative, expressed"	Medtr6g069810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212013.1.S1_at	A	A1TS	POPTR_0014s18825	POPTR_0014s18825 (11)	scaffold_14:16332307-16332506(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212015.1.S1_at	A	A1TS	POPTR_0014s18810	POPTR_0014s18810 (11)	scaffold_14:16252694-16255959(+) (11)	NA	NA	NA	AT5G44010.1	unknown protein; Has 28 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g56950.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212016.1.S1_at	A	A1TS	POPTR_0014s18780	POPTR_0014s18780 (11)	scaffold_14:16235631-16236991(+) (11)	NA	Q9FNC7	Histone-lysine N-methyltransferase SUVR2	AT5G43990.4	SET-domain containing protein lysine methyltransferase family protein 	LOC_Os02g40770.2	"SET domain containing protein, expressed"	Medtr7g116840.1	Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.212019.1.S1_at	A	A1TS	POPTR_0014s18750	POPTR_0014s18750 (10)	scaffold_14:16148824-16150237(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212020.1.S1_at	A	A1TS	POPTR_0014s18740	POPTR_0014s18740 (11)	scaffold_14:16117219-16118116(-) (11)	NA	Q86UA1	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212021.1.S1_at	A	A1TS	POPTR_0014s18720	POPTR_0014s18720 (11)	scaffold_14:16103264-16103450(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g116900.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212022.1.S1_at	A	A1TS	POPTR_0014s18710	POPTR_0014s18710 (11)	scaffold_14:16088528-16089058(-) (11)	NA	NA	NA	AT5G43950.1	Plant protein of unknown function (DUF946) 	LOC_Os03g04930.1	expressed protein	Medtr4g106920.1	"Protein of unknown function DUF946, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212023.1.S1_at	A	A1TS	POPTR_0014s18700	POPTR_0014s18700 (11)	scaffold_14:16087345-16087632(-) (11)	NA	NA	NA	AT2G20390.1	unknown protein; Has 50 Blast hits to 50 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g116910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212024.1.S1_at	A	A1TS	POPTR_0014s18690	POPTR_0014s18690 (10)	scaffold_14:16084335-16084917(+) (11)	NA	O65351	Subtilisin-like protease	AT1G04110.1	Subtilase family protein 	LOC_Os03g04950.1	"OsSub26 - Putative Subtilisin homologue, expressed"	Medtr7g117060.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212027.1.S1_at	A	A1TS	POPTR_0014s18650	POPTR_0014s18650 (11)	scaffold_14:15987657-15987967(-) (11)	NA	O04161	Ammonium transporter 1 member 2	AT4G13510.1	ammonium transporter 1;1 	LOC_Os02g40730.1	"ammonium transporter protein, putative, expressed"	Medtr1g065600.1	Rh-like protein/ammonium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212028.1.S1_at	A	A1TS	POPTR_0014s18640	POPTR_0014s18640 (11)	scaffold_14:15986667-15986895(+) (11)	NA	P54144	Ammonium transporter 1 member 1	AT4G13510.1	ammonium transporter 1;1 	LOC_Os04g43070.1	"ammonium transporter protein, putative, expressed"	Medtr7g117370.1	Rh-like protein/ammonium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212029.1.S1_at	A	A1TS	POPTR_0014s18540	POPTR_0014s18540 (11)	scaffold_14:15853949-15854513(+) (11)	NA	NA	NA	AT4G28760.2	Protein of unknown function (DUF3741) 	LOC_Os03g04990.1	expressed protein	Medtr7g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212030.1.S1_at	A	A1TS	POPTR_0014s18520	POPTR_0014s18520 (11)	scaffold_14:15762949-15763723(+) (11)	NA	NA	NA	AT2G20210.1	RNI-like superfamily protein 	LOC_Os12g12740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr7g117920.1	"leucine-rich repeat family protein, related "	NA	GO:0005515|protein binding	NA
PtpAffx.212031.1.S1_at	A	A1TS	POPTR_0014s18500	POPTR_0014s18500 (11)	scaffold_14:15712559-15712961(-) (11)	NA	Q94465	GTP cyclohydrolase 1	AT3G07270.1	GTP cyclohydrolase I 	LOC_Os04g56710.1	"GTP cyclohydrolase I 1, putative, expressed"	Medtr7g062120.1	GTP cyclohydrolase I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212032.1.S1_at	A	A1TS	POPTR_0014s18480	POPTR_0014s18480 (11)	scaffold_14:15701608-15702313(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.212033.1.S1_at	A	A1TS	POPTR_0014s18470	POPTR_0014s18470 (11)	scaffold_14:15698565-15699314(-) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT4G14300.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os10g33230.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g105300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.212034.1.S1_at	A	A1TS	POPTR_0014s18460	POPTR_0014s18460 (11)	scaffold_14:15689827-15690315(+) (11)	NA	NA	NA	AT1G10180.1	BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1); Has 132 Blast hits to 132 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os07g38060.1	expressed protein	Medtr4g114640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212035.1.S1_s_at	A	A1TS	POPTR_0014s18450	POPTR_0014s18450 (11)	scaffold_14:15664919-15666630(-) (11)	NA	Q4VCM1	Phospholipid--sterol O-acyltransferase	AT1G04010.1	phospholipid sterol acyl transferase 1 	LOC_Os02g56910.1	"lecithine cholesterol acyltransferase, putative"	Medtr7g116490.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
PtpAffx.212037.1.S1_at	A	A1TS	POPTR_0014s18440	POPTR_0014s18440 (11)	scaffold_14:15632915-15634486(-) (11)	NA	NA	NA	AT4G28590.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). 	LOC_Os01g61320.2	"thioredoxin, putative, expressed"	Medtr4g134500.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212038.1.S1_s_at	A	A1TS	POPTR_0014s18430	POPTR_0014s18430 (11)	scaffold_14:15595754-15596662(-) (11)	NA	O82662	"Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial"	AT2G20420.1	ATP citrate lyase (ACL) family protein 	LOC_Os02g40830.1	"succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.212039.1.S1_at	A	A1TA	POPTR_0014s18430	POPTR_0014s18430 (9)	scaffold_14:15595355-15595547(+) (11)	NA	O82662	"Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial"	AT2G20420.1	ATP citrate lyase (ACL) family protein 	LOC_Os02g40830.1	"succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.212040.1.S1_at	A	A1TS	POPTR_0014s18420	POPTR_0014s18420 (11)	scaffold_14:15562244-15562519(-) (11)	NA	Q2TSC7	Glutathione gamma-glutamylcysteinyltransferase 1	AT5G44070.1	phytochelatin synthase 1 (PCS1) 	LOC_Os06g01260.1	"glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed"	NA	NA	GO:0010038|response to metal ion||GO:0046938|phytochelatin biosynthetic process	GO:0046872|metal ion binding||GO:0016756|glutathione gamma-glutamylcysteinyltransferase activity	NA
PtpAffx.212041.1.S1_at	A	A1TS	POPTR_0014s18410	POPTR_0014s18410 (11)	scaffold_14:15506125-15506459(-) (11)	NA	Q2QKL5	Glutathione gamma-glutamylcysteinyltransferase 3	AT5G44070.1	phytochelatin synthase 1 (PCS1) 	LOC_Os06g01260.1	"glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed"	NA	NA	GO:0010038|response to metal ion||GO:0046938|phytochelatin biosynthetic process	GO:0046872|metal ion binding||GO:0016756|glutathione gamma-glutamylcysteinyltransferase activity	NA
PtpAffx.212042.1.S1_at	A	A1TS	POPTR_0014s18390	POPTR_0014s18390 (11)	scaffold_14:15490482-15491060(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212043.1.S1_at	A	A1TS	POPTR_0014s18370	POPTR_0014s18370 (11)	scaffold_14:15472140-15473644(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212044.1.S1_at	A	A1TS	POPTR_0014s18350	POPTR_0014s18350 (11)	scaffold_14:15445695-15446210(-) (11)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
PtpAffx.212046.1.S1_at	A	A1TS	POPTR_0014s18340	POPTR_0014s18340 (11)	scaffold_14:15414633-15415751(+) (11)	NA	Q54XC1	Cytosolic purine 5'-nucleotidase	AT1G75210.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os03g56310.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr5g089940.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212046.1.S1_s_at	A	A1TS	POPTR_0014s18340	POPTR_0014s18340 (11)	scaffold_14:15412969-15415651(+) (11)	NA	Q54XC1	Cytosolic purine 5'-nucleotidase	AT1G75210.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os03g56310.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr5g089940.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212047.1.S1_at	A	A2TS	POPTR_0002s20830	POPTR_0002s20830 (11)//POPTR_0161s00200 (9)	scaffold_161:2116-2210(+) (9)//scaffold_2:17068649-17068743(-) (11)	NA	NA	NA	AT5G27690.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os05g05820.1	"pro-resilin precursor, putative, expressed"	Medtr8g138820.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.212047.1.S1_s_at	A	A1TS	POPTR_0002s20830	POPTR_0002s20830 (11)	scaffold_161:2354-2658(+) (9)//scaffold_2:17068198-17068505(-) (11)	POPTR_0161s00200 (8)	NA	NA	AT5G27690.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os05g05820.1	"pro-resilin precursor, putative, expressed"	Medtr8g138820.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.212048.1.S1_at	A	A1TS	POPTR_0002s20840	POPTR_0002s20840 (11)	scaffold_2:17095147-17095603(+) (11)	NA	Q9SJG6	"Pentatricopeptide repeat-containing protein At2g42920, chloroplastic"	AT2G42920.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os01g55960.1	"pentatricopeptide, putative"	Medtr7g130260.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212049.1.S1_x_at	A	A1TS	POPTR_0002s20850	POPTR_0002s20850 (11)	scaffold_2:17097839-17097999(-) (11)	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr1g130090.1	Chloroplast Ycf2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21205.2.A1_a_at	A	A1TS	POPTR_0001s06910	POPTR_0001s06910 (11)	scaffold_1:5285291-5285813(+) (11)	NA	NA	NA	AT5G06980.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12320.1). 	NA	NA	Medtr8g044020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21205.4.S1_a_at	A	A1TS	POPTR_0004s01490	POPTR_0004s01490 (10)	scaffold_4:850754-851320(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212051.1.S1_at	A	A1TS	POPTR_0002s20870	POPTR_0002s20870 (11)	scaffold_2:17102438-17103431(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212052.1.S1_at	A	A1TS	POPTR_0483s00210	POPTR_0483s00210 (11)	scaffold_483:5580-6654(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212053.1.S1_at	A	A1TS	POPTR_0002s20920	POPTR_0002s20920 (11)	scaffold_2:17150577-17151215(-) (11)	NA	NA	NA	AT1G02960.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 100 Blast hits to 99 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 26; Fungi - 13; Plants - 29; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). 	LOC_Os02g48116.1	expressed protein	Medtr3g106950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212053.1.S1_s_at	A	A1TS	POPTR_0002s20920	POPTR_0002s20920 (11)	scaffold_2:17150024-17151120(-) (11)	NA	NA	NA	AT1G02960.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 100 Blast hits to 99 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 26; Fungi - 13; Plants - 29; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). 	LOC_Os02g48116.1	expressed protein	Medtr3g106950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212055.1.S1_at	A	A1TS	POPTR_0002s20990	POPTR_0002s20990 (11)	scaffold_2:17265876-17266183(-) (11)	POPTR_0014s12730 (6)	Q38796	Homeobox protein LUMINIDEPENDENS	AT4G02560.2	Homeodomain-like superfamily protein 	LOC_Os01g70810.1	"homeobox domain containing protein, expressed"	Medtr7g130110.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212056.1.S1_x_at	A	A2TS	POPTR_0020s00560	POPTR_0020s00560 (11)//POPTR_0638s00200 (9)	scaffold_20:905963-906509(+) (11)//scaffold_638:1226-1626(-) (9)	NA	NA	NA	AT1G65470.1	chromatin assembly factor-1 (FASCIATA1) (FAS1) 	LOC_Os01g67100.1	expressed protein	Medtr7g090120.1	FAS1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212057.1.S1_at	A	A1TS	POPTR_0638s00200	POPTR_0638s00200 (9)	scaffold_20:904890-905764(+) (9)//scaffold_638:1826-2741(-) (9)	POPTR_0020s00560 (8)	NA	NA	AT1G65470.1	chromatin assembly factor-1 (FASCIATA1) (FAS1) 	LOC_Os01g67100.1	expressed protein	Medtr7g090130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212058.1.S1_s_at	A	A1TS	POPTR_0007s15050	POPTR_0007s15050 (11)	scaffold_20:854601-854653(-) (11)//scaffold_7:14698110-14698162(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G32910.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g51980.1	"transferase family domain containing protein, expressed"	Medtr5g097970.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.212059.1.S1_at	A	A1TS	POPTR_0020s00530	POPTR_0020s00530 (11)	scaffold_20:836128-837453(-) (11)	NA	Q94AA9	"Xylogalacturonan beta-1,3-xylosyltransferase"	AT1G74680.1	Exostosin family protein 	LOC_Os08g34020.1	"exostosin family domain containing protein, expressed"	Medtr7g103930.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.212060.1.S1_at	A	A1TS	POPTR_0020s00520	POPTR_0020s00520 (11)	scaffold_20:813176-813922(+) (11)	NA	Q8TB22	Spermatogenesis-associated protein 20	AT4G03200.1	catalytics 	LOC_Os01g70950.1	"spermatogenesis-associated protein 20 precursor, putative, expressed"	Medtr7g130030.1	"Glycoside transferase, six-hairpin; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212061.1.S1_at	A	A2TS	POPTR_0020s00490	POPTR_0020s00490 (11)//POPTR_0020s00500 (11)	scaffold_20:753904-754523(-) (11)//scaffold_20:761179-761799(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212062.1.S1_at	A	A1TS	POPTR_0020s00480	POPTR_0020s00480 (11)	scaffold_20:747945-748883(-) (11)	POPTR_0002s22910 (8)	NA	NA	AT2G48060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os01g29230.1	expressed protein	Medtr7g139740.1	"Fibronectin, type III-like fold, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212065.1.S1_at	A	A1TS	POPTR_0020s00390	POPTR_0020s00390 (11)	scaffold_20:601752-602534(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212067.1.S1_at	A	A1TS	POPTR_0020s00350	POPTR_0020s00350 (11)	scaffold_20:400289-401169(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212068.1.S1_at	A	A1TS	POPTR_0020s00300	POPTR_0020s00300 (11)	scaffold_20:346096-348053(-) (11)	NA	NA	NA	AT4G03180.1	CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink). 	LOC_Os12g35270.1	expressed protein	Medtr7g129860.1	rRNA processing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212069.1.S1_a_at	A	A1TS	POPTR_0020s00290	POPTR_0020s00290 (11)	scaffold_20:342139-342176(+) (11)//scaffold_20:342566-342603(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212069.1.S1_at	A	A1TS	POPTR_0020s00290	POPTR_0020s00290 (11)	scaffold_20:341694-342560(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212070.1.S1_at	A	A1TS	POPTR_0020s00270	POPTR_0020s00270 (11)	scaffold_20:268280-269244(-) (11)	NA	NA	NA	AT2G47920.1	Kinase interacting (KIP1-like) family protein 	LOC_Os07g47090.2	"KIP1, putative, expressed"	Medtr7g129820.1	KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212071.1.S1_at	A	A1TS	POPTR_0020s00240	POPTR_0020s00240 (11)	scaffold_20:213424-214895(-) (11)	NA	Q9FVQ0	Flavin-containing monooxygenase YUCCA10	AT1G48910.1	Flavin-containing monooxygenase family protein 	LOC_Os12g08780.1	"flavin monooxygenase, putative, expressed"	Medtr5g034600.1	"Monooxygenase, FAD-binding; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212072.1.S1_at	A	A1TS	POPTR_0020s00210	POPTR_0020s00210 (11)	scaffold_20:150114-151701(-) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os11g32110.4	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.212073.1.S1_at	A	A1TS	POPTR_0020s00200	POPTR_0020s00200 (11)	scaffold_20:142884-143211(-) (11)	NA	Q2R3F5	Auxin response factor 23	AT5G62000.4	auxin response factor 2 	LOC_Os11g32110.3	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212074.1.S1_s_at	A	A1TS	POPTR_0019s01150	POPTR_0019s01150 (11)	scaffold_19:875127-876847(+) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT1G21980.1	phosphatidylinositol-4-phosphate 5-kinase 1 	LOC_Os03g49800.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr5g064960.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.212076.1.S1_at	A	A1TS	POPTR_0019s01140	POPTR_0019s01140 (11)	scaffold_19:867133-868519(+) (11)	NA	Q8L751	Oxysterol-binding protein-related protein 1C	AT4G08180.1	OSBP(oxysterol binding protein)-related protein 1C 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.212077.1.S1_at	A	A1TS	POPTR_0019s01110	POPTR_0019s01110 (11)	scaffold_19:846676-847157(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212078.1.S1_s_at	A	A1TS	POPTR_0019s01090	POPTR_0019s01090 (11)	scaffold_19:825500-826255(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212080.1.S1_at	A	A1TS	POPTR_0019s01040	POPTR_0019s01040 (11)	scaffold_19:794164-795292(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212081.1.S1_at	A	A1TS	POPTR_0019s01010	POPTR_0019s01010 (9)	scaffold_19:776747-777130(+) (9)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	AC225526_21.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; NB-ARC AC225526.7 82606-71468 E EGN_Mt090430 200"	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.212082.1.S1_at	A	A1TS	POPTR_0019s01000	POPTR_0019s01000 (10)	scaffold_19:764839-765975(-) (10)	NA	Q9NRL2	Bromodomain adjacent to zinc finger domain protein 1A	AT5G08630.1	DDT domain-containing protein 	LOC_Os02g35100.2	"DDT domain containing protein, putative, expressed"	Medtr4g144400.1	DDT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212083.1.S1_at	A	A1TS	POPTR_0019s00980	POPTR_0019s00980 (11)	scaffold_19:740995-741570(-) (11)	NA	NA	NA	AT5G14930.2	senescence-associated gene 101 	LOC_Os11g09010.3	"lipase, putative, expressed"	Medtr6g008690.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.212084.1.S1_at	A	A1TS	POPTR_0019s00970	POPTR_0019s00970 (11)	scaffold_19:738984-739423(+) (11)	NA	O65351	Subtilisin-like protease	AT1G04110.1	Subtilase family protein 	LOC_Os03g02750.1	"OsSub25 - Putative Subtilisin homologue, expressed"	Medtr5g011380.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.212085.1.S1_at	A	A1TS	POPTR_0019s00960	POPTR_0019s00960 (11)	scaffold_19:733475-734006(+) (11)	NA	NA	NA	AT5G14930.2	senescence-associated gene 101 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr6g008690.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.212086.1.S1_at	A	A1TS	POPTR_0019s00900	POPTR_0019s00900 (11)	scaffold_19:673888-683957(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g10550.1	"NBS-LRR disease resistance protein, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	NA	GO:0005515|protein binding	NA
PtpAffx.212087.1.S1_at	A	A1TS	POPTR_0021s01060	POPTR_0021s01060 (10)	scaffold_21:627661-633051(+) (10)	POPTR_0019s00200 (6)	Q9FE20	Serine/threonine-protein kinase PBS1	AT3G20530.1	Protein kinase superfamily protein 	LOC_Os02g30900.1	"protein kinase domain containing protein, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212088.1.S1_at	A	A1TS	POPTR_0019s00240	POPTR_0019s00240 (11)	scaffold_19:44689-45633(+) (11)	NA	P34881	DNA (cytosine-5)-methyltransferase 1	AT5G49160.1	methyltransferase 1 	LOC_Os03g58400.1	"C-5 cytosine-specific DNA methylase, putative, expressed"	Medtr6g071440.1	Bromo adjacent region; C-5 cytosine-specific DNA methylase 	GO:0006306|DNA methylation||GO:0044260|cellular macromolecule metabolic process||GO:0044281|small molecule metabolic process	GO:0003677|DNA binding	NA
PtpAffx.212088.1.S1_s_at	A	A2TS	POPTR_0004s14140	POPTR_0019s00240 (11)//POPTR_0004s14140 (11)	scaffold_19:44651-45653(+) (11)//scaffold_4:14641112-14642184(+) (11)	NA	P34881	DNA (cytosine-5)-methyltransferase 1	AT5G49160.1	methyltransferase 1 	LOC_Os03g58400.1	"C-5 cytosine-specific DNA methylase, putative, expressed"	Medtr6g071440.1	Bromo adjacent region; C-5 cytosine-specific DNA methylase 	GO:0006306|DNA methylation||GO:0044260|cellular macromolecule metabolic process||GO:0044281|small molecule metabolic process	GO:0003677|DNA binding	NA
PtpAffx.212089.1.S1_at	A	A1TS	POPTR_0019s00270	POPTR_0019s00270 (11)	scaffold_19:69367-69982(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212091.1.S1_at	A	A1TS	POPTR_0019s00300	POPTR_0019s00300 (11)	scaffold_19:92453-92922(-) (11)	NA	A5YVF1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	LOC_Os12g09580.1	"leafbladeless1, putative, expressed"	Medtr3g151680.1	"Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212092.1.S1_at	A	A1TS	POPTR_0019s00310	POPTR_0019s00310 (11)	scaffold_19:96598-97197(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212092.1.S1_x_at	A	A1TS	POPTR_0019s00310	POPTR_0019s00310 (11)	scaffold_19:96598-97197(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212094.1.S1_at	A	A1TS	POPTR_0031s00500	POPTR_0031s00500 (11)	scaffold_31:349409-350461(+) (11)	NA	NA	NA	AT4G15093.1	catalytic LigB subunit of aromatic ring-opening dioxygenase family 	LOC_Os01g65680.1	"4,5-DOPA dioxygenase extradiol, putative, expressed"	Medtr7g035130.1	"Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212095.1.S1_s_at	A	A2TS	POPTR_0019s00390	POPTR_0019s00390 (11)//POPTR_0031s00490 (11)	scaffold_19:169794-169876(-) (11)//scaffold_31:343346-343428(+) (11)	POPTR_0661s00220 (8)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.212096.1.S1_at	A	A1TS	POPTR_0031s00470	POPTR_0031s00470 (11)	scaffold_31:333234-333707(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g36920.1	"disease resistance protein, putative, expressed"	Medtr3g039930.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.212097.1.S1_at	A	A1TS	POPTR_0019s00420	POPTR_0019s00420 (10)	scaffold_19:211978-212450(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212098.1.S1_at	A	A1TS	POPTR_0031s00300	POPTR_0031s00300 (11)	scaffold_19:224000-224421(+) (10)//scaffold_31:131694-132133(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212100.1.S1_s_at	A	A4TS	POPTR_0019s00490	POPTR_0031s00280 (11)//POPTR_0031s00240 (11)//POPTR_0019s00490 (11)//POPTR_0019s00440 (9)	scaffold_19:232235-232811(-) (9)//scaffold_19:282192-282772(-) (11)//scaffold_31:48531-49111(+) (11)//scaffold_31:122694-123274(+) (11)	NA	NA	NA	AT5G08450.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). 	LOC_Os07g29450.1	expressed protein	Medtr7g035190.1	Histone deacetylation protein Rxt3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212101.1.S1_at	A	A1TS	POPTR_0019s00500	POPTR_0019s00500 (11)	scaffold_19:295944-297434(+) (11)	NA	NA	NA	AT5G08450.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). 	LOC_Os07g29450.1	expressed protein	Medtr7g035190.1	Histone deacetylation protein Rxt3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212104.1.S1_at	A	A1TS	POPTR_0019s00600	POPTR_0019s00600 (11)	scaffold_19:375934-376908(+) (11)	NA	NA	NA	AT5G23520.1	smr (Small MutS Related) domain-containing protein 	LOC_Os04g36058.2	"DUF1771 domain containing protein, putative, expressed"	Medtr7g092810.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212105.1.S1_at	A	A1TS	POPTR_0019s00610	POPTR_0019s00610 (11)	scaffold_19:378644-381242(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212106.1.S1_at	A	A1TS	POPTR_0019s00630	POPTR_0019s00630 (11)	scaffold_19:386801-388206(-) (11)	NA	P28583	Calcium-dependent protein kinase SK5	AT1G35670.1	calcium-dependent protein kinase 2 	LOC_Os11g07040.1	"CAMK_CAMK_like.43 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g144630.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212107.1.S1_at	A	A1TS	POPTR_0019s00640	POPTR_0019s00640 (11)	scaffold_19:403277-403846(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os05g15230.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212108.1.S1_at	A	A1TS	POPTR_0019s00680	POPTR_0019s00680 (11)	scaffold_19:429761-430563(-) (11)	NA	Q9FGN8	Protein DYAD	AT5G23610.1	BEST Arabidopsis thaliana protein match is: SWITCH1 (TAIR:AT5G51330.1); Has 170 Blast hits to 162 proteins in 36 species: Archae - 3; Bacteria - 6; Metazoa - 6; Fungi - 4; Plants - 117; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). 	LOC_Os03g44760.1	"SWI1, putative, expressed"	AC235756_28.1	"SWI1, related AC235756.1 180586-176312 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212111.1.S1_at	A	A1TS	POPTR_0019s00730	POPTR_0019s00730 (11)	scaffold_19:489318-490164(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212112.1.S1_at	A	A1MS	POPTR_0019s00740	POPTR_0019s00740 (9)	scaffold_19:493945-494467(+) (9)	NA	NA	NA	AT1G47570.1	RING/U-box superfamily protein 	LOC_Os11g07450.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g144600.1	"Zinc finger, RING-type; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212112.1.S1_x_at	A	A1MS	POPTR_0019s00740	POPTR_0019s00740 (10)	scaffold_19:492548-494467(+) (10)	NA	NA	NA	AT1G47570.1	RING/U-box superfamily protein 	LOC_Os11g07450.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g144600.1	"Zinc finger, RING-type; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212114.1.S1_at	A	A1TS	POPTR_0895s00200	POPTR_0895s00200 (9)	scaffold_19:522377-522866(-) (11)//scaffold_895:1713-2092(-) (9)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212115.1.S1_at	A	A1TS	POPTR_0019s00790	POPTR_0019s00790 (11)	scaffold_19:534096-534397(+) (11)	NA	Q7XQP4	Serine/threonine-protein kinase SAPK7	AT1G10940.1	Protein kinase superfamily protein 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g144500.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212115.1.S1_x_at	A	A1TS	POPTR_0019s00790	POPTR_0019s00790 (11)	scaffold_19:534096-534397(+) (11)	NA	Q7XQP4	Serine/threonine-protein kinase SAPK7	AT1G10940.1	Protein kinase superfamily protein 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g144500.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212117.1.S1_s_at	A	A2TS	POPTR_0019s00890	POPTR_0019s00890 (11)//POPTR_0019s00850 (10)	scaffold_19:578013-578248(-) (10)//scaffold_19:661065-661300(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.1	expressed protein	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.212118.1.S1_at	A	A1TS	POPTR_0078s00210	POPTR_0078s00210 (11)	scaffold_19:3123284-3123320(-) (9)//scaffold_78:31556-31682(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr5g017690.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.212119.1.S1_at	A	A1TS	POPTR_0078s00250	POPTR_0078s00250 (11)	scaffold_78:67804-68159(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212120.1.S1_at	A	A3TS	POPTR_0004s02650	POPTR_0078s00240 (11)//POPTR_0078s00230 (11)//POPTR_0004s02650 (11)	scaffold_4:1769701-1770049(-) (11)//scaffold_78:38197-38545(-) (11)//scaffold_78:47445-47793(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212121.1.S1_at	A	A1TS	POPTR_0078s00260	POPTR_0078s00260 (11)	scaffold_78:81315-82601(-) (11)	POPTR_0019s03100 (8)	Q3YJS9	Patatin-3-Kuras 1	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212122.1.S1_at	A	A1TS	POPTR_0019s03090	POPTR_0019s03090 (11)	scaffold_19:3106378-3107291(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.212123.1.S1_s_at	A	A2TS	POPTR_0019s02060	POPTR_0019s03050 (9)//POPTR_0019s02060 (9)	scaffold_19:1923367-1923586(-) (9)//scaffold_19:3080564-3080783(+) (9)	POPTR_0190s00220 (6)	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.212125.1.S1_at	A	A1TS	POPTR_0019s03130	POPTR_0019s03130 (10)	scaffold_19:3144832-3145407(-) (10)	NA	Q6NRM6	DNA replication licensing factor MCM9	AT2G14050.1	minichromosome maintenance 9 	LOC_Os06g11500.1	"MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed"	Medtr2g009230.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.212126.1.S1_at	A	A1TS	POPTR_0019s03140	POPTR_0019s03140 (9)	scaffold_19:3155413-3156380(+) (9)	NA	Q8VYZ2	Purple acid phosphatase 8	AT2G01890.1	purple acid phosphatase 8 	LOC_Os11g34710.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr4g154540.1	Metallophosphoesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212127.1.S1_s_at	A	A3TS	POPTR_0019s03160	POPTR_0019s03160 (11)//POPTR_0102s00210 (11)//POPTR_0102s00240 (11)	scaffold_102:10784-11376(-) (11)//scaffold_102:47824-48416(-) (11)//scaffold_19:3169788-3170380(+) (11)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.212129.1.S1_at	A	A1TS	POPTR_0019s03160	POPTR_0019s03160 (11)	scaffold_19:3170471-3170509(+) (11)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.212130.1.S1_at	A	A1TS	POPTR_0012s00520	POPTR_0012s00520 (11)	scaffold_11:2056033-2056356(+) (9)//scaffold_12:221359-221681(+) (11)//scaffold_12:227957-228279(+) (9)//scaffold_78:43395-43717(-) (9)//scaffold_9:6510148-6510470(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212130.1.S1_x_at	A	A1TS	POPTR_0012s00520	POPTR_0012s00520 (11)	scaffold_12:221359-221681(+) (11)//scaffold_12:227957-228279(+) (9)//scaffold_78:43395-43717(-) (9)//scaffold_9:6510148-6510470(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212131.1.S1_at	A	A1TS	POPTR_0019s03200	POPTR_0019s03200 (10)	scaffold_19:3218703-3218990(-) (10)//scaffold_19:3261034-3261140(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212131.1.S1_x_at	A	A1TS	POPTR_0019s03200	POPTR_0019s03200 (9)	scaffold_19:3218703-3222045(-) (10)//scaffold_19:3261034-3261349(-) (9)	POPTR_0019s03210 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212132.1.S1_s_at	A	A2TS	POPTR_0019s03230	POPTR_0019s03260 (11)//POPTR_0019s03230 (11)	scaffold_19:3237005-3237331(+) (11)//scaffold_19:3276832-3277158(+) (11)	NA	Q9FKD0	Probable S-adenosylmethionine-dependent methyltransferase At5g37970	AT1G68040.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g56950.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.212134.1.S1_at	A	A1TS	POPTR_0019s03360	POPTR_0019s03360 (11)	scaffold_19:3423239-3424397(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212135.1.S1_at	A	A1TS	POPTR_0019s03380	POPTR_0019s03380 (11)	scaffold_19:3445547-3446391(-) (11)	NA	P09520	Movement protein	NA	NA	NA	NA	Medtr6g083560.1	Tobamoviral movement protein; Ribosomal protein L9 N-terminal-like 	GO:0006810|transport	GO:0003676|nucleic acid binding	NA
PtpAffx.212136.1.S1_at	A	A1TS	POPTR_0019s03390	POPTR_0019s03390 (11)	scaffold_19:3453242-3453645(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212137.1.S1_at	A	A1TS	POPTR_0019s03420	POPTR_0019s03420 (11)	scaffold_19:3473695-3473829(-) (11)//scaffold_19:3478028-3478156(-) (9)//scaffold_19:3527671-3527802(-) (10)//scaffold_784:212-4430(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212137.1.S1_s_at	A	A1TS	POPTR_0019s03420	POPTR_0019s03420 (11)	scaffold_19:3473545-3473709(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212138.1.S1_at	A	A1TS	POPTR_0019s03440	POPTR_0019s03440 (11)	scaffold_19:3509404-3509899(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016234|inclusion body
PtpAffx.212140.1.S1_at	A	A1TS	POPTR_0019s03480	POPTR_0019s03480 (11)	scaffold_19:3561941-3562209(-) (11)	NA	Q9C6P3	Calcium-dependent protein kinase 33	AT3G04530.1	phosphoenolpyruvate carboxylase kinase 2 	LOC_Os02g56310.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g093530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212141.1.S1_at	A	A1TS	POPTR_0019s03520	POPTR_0019s03520 (9)	scaffold_19:3604638-3606235(+) (10)	NA	P92948	Cell division cycle 5-like protein	AT1G09770.1	cell division cycle 5 	LOC_Os04g28090.1	"MYB family transcription factor, putative, expressed"	Medtr5g010630.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212142.1.S1_at	A	A1TS	POPTR_0019s03590	POPTR_0019s03590 (11)	scaffold_19:3683675-3686353(-) (11)	NA	Q5ZMR9	Exportin-4	AT3G04490.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38092.1); Has 75 Blast hits to 64 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). 	LOC_Os10g33710.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212143.1.S1_at	A	A1TS	POPTR_0019s03610	POPTR_0019s03610 (11)	scaffold_19:3703942-3704383(+) (11)	NA	Q9FRS4	Pentatricopeptide repeat-containing protein At1g08610	AT1G08610.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g33700.2	"PPR repeat containing protein, expressed"	Medtr1g093600.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212145.1.S1_at	A	A1TS	POPTR_0019s03690	POPTR_0019s03690 (11)	scaffold_19:3769636-3770282(+) (11)	NA	NA	NA	AT2G21840.1	Cysteine/Histidine-rich C1 domain family protein 	NA	NA	NA	NA	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.212146.1.S1_at	A	A2TS	POPTR_0019s03730	POPTR_0019s03730 (11)//POPTR_0019s03740 (11)	scaffold_19:3829249-3829482(-) (11)//scaffold_19:3835979-3836212(-) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.212147.1.S1_at	A	A1TS	POPTR_0019s03780	POPTR_0019s03780 (11)	scaffold_19:3867450-3867997(+) (11)	NA	NA	NA	AT3G04360.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g57000.1	"C2 domain containing protein, putative, expressed"	Medtr1g093800.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212148.1.S1_at	A	A1TS	POPTR_0019s03800	POPTR_0019s03800 (11)	scaffold_19:3871132-3872051(-) (11)	NA	Q61687	Transcriptional regulator ATRX	AT1G08600.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os10g31970.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr1g093850.1	"SNF2-related; Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.212148.1.S1_x_at	A	A1TS	POPTR_0019s03800	POPTR_0019s03800 (11)	scaffold_19:3871191-3872046(-) (11)	NA	Q61687	Transcriptional regulator ATRX	AT1G08600.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os10g31970.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr1g093850.1	"SNF2-related; Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.212149.1.S1_at	A	A1TS	POPTR_0019s03810	POPTR_0019s03810 (11)	scaffold_19:3875384-3876460(-) (11)	NA	Q61687	Transcriptional regulator ATRX	AT1G08600.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os10g31970.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr1g093880.1	SNF2-related 	NA	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.212150.1.S1_at	A	A1TS	POPTR_0019s03820	POPTR_0019s03820 (11)	scaffold_19:3888950-3891106(+) (11)	NA	NA	NA	AT3G04340.1	FtsH extracellular protease family 	NA	NA	Medtr1g094060.1	Peptidase M41; Caspase Recruitment; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212151.1.S1_at	A	A1TS	POPTR_0019s03830	POPTR_0019s03830 (11)	scaffold_19:3891794-3892477(-) (11)	NA	Q9FRS6	Leucine-rich repeat receptor-like protein kinase PXL1	AT1G08590.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os02g02140.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr1g094070.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.212152.1.S1_s_at	A	A1TS	POPTR_0019s03860	POPTR_0019s03860 (10)	scaffold_19:3908698-3909384(+) (10)//scaffold_19:3913935-3914506(-) (9)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212155.1.S1_s_at	A	A1TS	POPTR_0019s03870	POPTR_0019s03870 (11)	scaffold_19:3922466-3922912(+) (11)	NA	Q9FNG3	Uncharacterized protein At5g06450	AT3G11770.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g47100.1	"3-5 exonuclease domain-containing protein, putative, expressed"	Medtr2g085350.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212156.1.S1_at	A	A1TS	POPTR_0019s03870	POPTR_0019s03870 (11)	scaffold_19:3922981-3924401(+) (11)	NA	Q9FNG3	Uncharacterized protein At5g06450	AT3G11770.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g47100.1	"3-5 exonuclease domain-containing protein, putative, expressed"	Medtr2g085350.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212157.1.S1_at	A	A1TS	POPTR_0019s04000	POPTR_0019s04000 (10)	scaffold_19:4115651-4116392(-) (11)	NA	NA	NA	AT3G04310.1	unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g065580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212158.1.S1_s_at	A	A1TS	POPTR_0019s04000	POPTR_0019s04000 (11)	scaffold_19:4118599-4118756(-) (11)	NA	NA	NA	AT3G04310.1	unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g065580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212159.1.S1_at	A	A1TS	POPTR_0019s04020	POPTR_0019s04020 (11)	scaffold_19:4122489-4123071(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212160.1.S1_at	A	A1TS	POPTR_0019s04040	POPTR_0019s04040 (11)	scaffold_19:4134699-4136099(-) (11)	NA	NA	NA	AT5G37360.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g57030.1	expressed protein	Medtr1g093310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212161.1.S1_at	A	A1TS	POPTR_0019s04050	POPTR_0019s04050 (10)	scaffold_19:4144037-4144537(+) (11)	NA	Q54ML6	Probable ran guanine nucleotide release factor	AT1G69680.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os04g38610.2	"RAN guanine nucleotide release factor, putative, expressed"	Medtr5g040620.1	Ran-interacting Mog1 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212162.1.S1_at	A	A1TS	POPTR_0019s04060	POPTR_0019s04060 (10)	scaffold_19:4146852-4147511(+) (11)	NA	Q5KTS5	Glucose and ribitol dehydrogenase	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr8g146300.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212164.1.S1_at	A	A1TS	POPTR_0019s04090	POPTR_0019s04090 (11)	scaffold_19:4175230-4176256(-) (11)	NA	Q92616	Translational activator GCN1	AT1G64790.1	ILITYHIA 	LOC_Os03g51140.1	"HEAT repeat family protein, putative, expressed"	Medtr7g143040.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212165.1.S1_at	A	A1TS	POPTR_0019s04090	POPTR_0019s04090 (11)	scaffold_19:4187168-4187325(-) (11)	NA	Q92616	Translational activator GCN1	AT1G64790.1	ILITYHIA 	LOC_Os03g51140.1	"HEAT repeat family protein, putative, expressed"	Medtr7g143040.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212166.1.S1_at	A	A1TS	POPTR_0019s04120	POPTR_0019s04120 (10)	scaffold_19:4224337-4224576(+) (11)	NA	Q06RD5	Photosystem II CP43 chlorophyll apoprotein	ATCG00280.1	photosystem II reaction center protein C 	LOC_Os04g16874.1	"photosystem II 44 kDa reaction center protein, putative, expressed"	Medtr8g015970.1	Photosynthetic reaction centre protein; Photosystem antenna protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212166.1.S1_x_at	A	A1MS	POPTR_0019s04120	POPTR_0019s04120 (11)	scaffold_19:4224337-4224576(+) (11)	NA	Q06RD5	Photosystem II CP43 chlorophyll apoprotein	ATCG00280.1	photosystem II reaction center protein C 	LOC_Os04g16874.1	"photosystem II 44 kDa reaction center protein, putative, expressed"	Medtr8g015970.1	Photosynthetic reaction centre protein; Photosystem antenna protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212167.1.S1_at	A	A1TS	POPTR_0019s04180	POPTR_0019s04180 (10)	scaffold_19:4276181-4277160(+) (10)	NA	NA	NA	AT3G04260.1	plastid transcriptionally active 3 	LOC_Os10g32540.1	"SAP domain containing protein, expressed"	Medtr1g093130.1	Ribosomal protein L14b/L23e; DNA-binding SAP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.212168.1.S1_at	A	A1TS	POPTR_0019s04190	POPTR_0019s04190 (11)	scaffold_19:4288130-4289901(+) (11)	NA	Q5S2C3	Protein PIR	AT5G18410.1	transcription activators 	LOC_Os03g05020.1	"PIR, putative, expressed"	Medtr7g143230.1	Cytoplasmic fragile X mental retardation protein interacting protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212169.1.S1_at	A	A1TS	POPTR_0019s04200	POPTR_0019s04200 (11)	scaffold_19:4296875-4298535(+) (11)	NA	Q5S2C3	Protein PIR	AT5G18410.3	transcription activators 	LOC_Os03g05020.1	"PIR, putative, expressed"	Medtr7g143220.1	Cytoplasmic fragile X mental retardation protein interacting protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212170.1.S1_at	A	A1TS	POPTR_0019s04220	POPTR_0019s04220 (11)	scaffold_19:4320713-4321598(+) (11)	NA	Q9LVP0	Probable leucine-rich repeat receptor-like protein kinase At5g63930	AT5G63930.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g42700.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.212171.1.S1_at	A	A1TS	POPTR_0019s04240	POPTR_0019s04240 (11)	scaffold_19:4344482-4344931(+) (11)	NA	Q94JX6	"Pentatricopeptide repeat-containing protein At5g18390, mitochondrial"	AT5G18390.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os08g41380.1	"pentatricopeptide, putative, expressed"	Medtr6g089550.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212172.1.S1_at	A	A1TS	POPTR_0019s04250	POPTR_0019s04250 (11)	scaffold_19:4347838-4347874(-) (11)	NA	Q9SFF9	Germin-like protein subfamily 1 member 7	AT3G05950.1	RmlC-like cupins superfamily protein 	LOC_Os08g08960.1	"Cupin domain containing protein, expressed"	Medtr6g005250.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.212174.1.S1_at	A	A1TS	POPTR_0019s04335	POPTR_0019s04335 (11)	scaffold_19:4433106-4433318(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212175.1.S1_at	A	A1TS	POPTR_0019s07170	POPTR_0019s07170 (11)	scaffold_19:7914272-7915320(+) (11)	NA	Q2KJJ5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.21218.1.S1_at	A	A1TS	POPTR_0003s03060	POPTR_0003s03060 (11)	scaffold_3:3412498-3413273(+) (11)	POPTR_0001s20760 (6)	Q9SCW1	Beta-galactosidase 1	AT3G13750.1	beta galactosidase 1 	LOC_Os01g39830.1	"beta-galactosidase, putative, expressed"	Medtr2g121320.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.212181.1.S1_at	A	A1TS	POPTR_0019s07200	POPTR_0019s07200 (11)	scaffold_19:8052413-8053005(-) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT5G16730.1	Plant protein of unknown function (DUF827) 	LOC_Os05g02820.1	"protein transport protein-related, putative, expressed"	Medtr4g107430.1	"protein transport protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212184.1.S1_at	A	A1TS	POPTR_0019s07270	POPTR_0019s07270 (11)	scaffold_19:8249604-8250005(+) (11)	NA	P59278	Uncharacterized protein At1g51745	AT3G03140.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os02g47170.1	expressed protein	Medtr4g106850.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212185.1.S1_at	A	A1TS	POPTR_0019s07300	POPTR_0019s07300 (11)	scaffold_19:8278032-8278607(-) (11)	NA	NA	NA	AT5G17210.1	Protein of unknown function (DUF1218) 	LOC_Os06g02440.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212186.1.S1_x_at	A	A4MS	POPTR_0001s44830	POPTR_0019s11750 (9)//POPTR_0005s01140 (9)//POPTR_0001s44830 (9)//POPTR_0004s15690 (9)	scaffold_1:45221844-45222177(+) (9)//scaffold_19:12978586-12978919(-) (9)//scaffold_4:16271875-16272208(+) (9)//scaffold_5:703393-713469(-) (9)	POPTR_0036s00205 (7)//POPTR_0005s28430 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212188.1.S1_at	A	A1TS	POPTR_0019s07510	POPTR_0019s07510 (11)	scaffold_19:8543704-8544542(+) (11)	NA	NA	NA	AT3G10940.1	dual specificity protein phosphatase (DsPTP1) family protein 	LOC_Os12g02120.2	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.212188.1.S1_s_at	A	A1TS	POPTR_0019s07510	POPTR_0019s07510 (11)	scaffold_19:8543588-8544416(+) (11)	NA	NA	NA	AT3G10940.1	dual specificity protein phosphatase (DsPTP1) family protein 	LOC_Os12g02120.2	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.212189.1.S1_s_at	A	A1TS	POPTR_0019s07530	POPTR_0019s07530 (11)	scaffold_19:8559413-8559761(-) (11)	NA	Q7X996	CBL-interacting protein kinase 2	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212190.1.S1_at	A	A1TS	POPTR_0019s07560	POPTR_0019s07560 (9)	scaffold_19:8622042-8622757(-) (9)	NA	NA	NA	AT5G05330.1	HMG-box (high mobility group) DNA-binding family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212191.1.S1_at	A	A1TS	POPTR_0019s07570	POPTR_0019s07570 (10)	scaffold_19:8625908-8628148(-) (11)	NA	NA	NA	AT2G40480.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr5g091420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212192.1.S1_at	A	A2TS	POPTR_0019s07590	POPTR_0019s07590 (10)//POPTR_0194s00200 (9)	scaffold_19:8669192-8669640(+) (10)//scaffold_194:52837-53285(-) (9)	NA	O04647	Pentatricopeptide repeat-containing protein At5g27270	AT5G27270.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g02120.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g089510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212193.1.S1_at	A	A1TS	POPTR_0019s07610	POPTR_0019s07610 (11)	scaffold_19:8693161-8693496(-) (11)	NA	NA	NA	AT5G16920.1	Fasciclin-like arabinogalactan family protein 	LOC_Os12g13160.1	conserved hypothetical protein	Medtr5g105080.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212194.1.S1_at	A	A2MS	POPTR_0019s07705	POPTR_0019s07705 (10)//POPTR_0019s07700 (9)	scaffold_19:8834330-8839176(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212195.1.S1_at	A	A1TS	POPTR_0019s07720	POPTR_0019s07720 (11)	scaffold_19:8854363-8855985(+) (11)	NA	NA	NA	AT5G16810.1	Protein kinase superfamily protein 	LOC_Os02g46750.2	expressed protein	Medtr5g006320.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212196.1.S1_at	A	A1TS	POPTR_0019s07760	POPTR_0019s07760 (11)	scaffold_19:8899800-8900240(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT5G16770.2	myb domain protein 9 	LOC_Os06g11780.1	"MYB family transcription factor, putative"	Medtr5g007480.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212197.1.S1_at	A	A1TS	POPTR_0019s07770	POPTR_0019s07770 (9)	scaffold_19:8907388-8908048(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212200.1.S1_s_at	A	A1TS	POPTR_0019s04530	POPTR_0019s04530 (11)	scaffold_19:4711869-4711903(+) (11)	NA	NA	NA	AT2G38430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g30140.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212200.1.S1_x_at	A	A1TS	POPTR_0019s04530	POPTR_0019s04530 (10)	scaffold_19:4711434-4711935(+) (10)	NA	NA	NA	AT2G38430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g30140.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212201.1.S1_x_at	A	A1TS	POPTR_0198s00210	POPTR_0198s00210 (11)	scaffold_198:13398-14505(+) (11)	NA	NA	NA	AT2G38430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212202.1.S1_at	A	A2TS	POPTR_0019s04600	POPTR_0019s04600 (9)//POPTR_0198s00230 (9)	scaffold_19:4793672-4794540(-) (10)//scaffold_198:54696-55560(-) (10)	NA	Q9LZM4	Wall-associated receptor kinase-like 20	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g26140.1	"cysteine-rich receptor-like protein kinase 4 precursor, putative"	Medtr7g143320.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212203.1.S1_at	A	A1MS	POPTR_0019s04610	POPTR_0019s04610 (11)	scaffold_19:4802559-4802870(+) (11)	NA	Q9SM43	"Violaxanthin de-epoxidase, chloroplastic"	AT1G08550.2	non-photochemical quenching 1 	LOC_Os04g31040.3	"violaxanthin de-epoxidase, putative, expressed"	Medtr7g143290.1	Lipocalin-related protein and Bos/Can/Equ allergen; Calycin 	GO:0055114|oxidation reduction	GO:0046422|violaxanthin de-epoxidase activity	GO:0009507|chloroplast
PtpAffx.212204.1.S1_at	A	A1TS	POPTR_0019s04680	POPTR_0019s04680 (11)	scaffold_19:4857998-4858217(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212205.1.S1_at	A	A1TS	POPTR_0019s04710	POPTR_0019s04710 (11)	scaffold_19:4923013-4923478(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G18270.2	Arabidopsis NAC domain containing protein 87 	LOC_Os03g21030.1	"no apical meristem protein, putative, expressed"	Medtr7g100140.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.212206.1.S1_at	A	A1MS	POPTR_0019s04720	POPTR_0019s04720 (10)	scaffold_19:4942270-4944713(+) (10)	NA	Q4G055	RNA-binding protein 40	AT1G09230.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g21020.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g100170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.212207.1.S1_at	A	A1TS	POPTR_0019s04740	POPTR_0019s04740 (11)	scaffold_19:4952057-4952987(-) (11)	NA	NA	NA	AT2G33260.1	Tryptophan/tyrosine permease 	LOC_Os07g12330.1	"tryptophan/tyrosine permease family protein, putative, expressed"	Medtr6g030620.1	Aromatic amino acid permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212208.1.S1_at	A	A1TS	POPTR_0019s04770	POPTR_0019s04770 (11)	scaffold_19:4971808-4972694(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212209.1.S1_s_at	A	A1TS	POPTR_0019s04820	POPTR_0019s04820 (11)	scaffold_19:5043835-5044226(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT3G04030.3	Homeodomain-like superfamily protein 	LOC_Os03g20900.1	"Myb transcription factor, putative, expressed"	Medtr2g107820.1	"Peptidase M22, glycoprotease; Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212210.1.S1_s_at	A	A1TS	POPTR_0019s04860	POPTR_0019s04860 (9)	scaffold_19:5104095-5104547(-) (9)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr7g100310.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.212211.1.S1_at	A	A1TS	POPTR_0019s04870	POPTR_0019s04870 (11)	scaffold_19:5110059-5110621(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212212.1.S1_at	A	A1TS	POPTR_0019s04880	POPTR_0019s04880 (11)	scaffold_19:5118241-5119119(-) (11)	NA	NA	NA	AT2G23840.1	HNH endonuclease 	LOC_Os07g07480.1	"HNH endonuclease domain-containing protein, putative, expressed"	Medtr7g100320.1	HNH nuclease 	NA	GO:0004519|endonuclease activity||GO:0003676|nucleic acid binding	NA
PtpAffx.212213.1.S1_s_at	A	A1TS	POPTR_0019s04890	POPTR_0019s04890 (11)	scaffold_19:5122101-5123916(-) (11)	NA	P26357	TATA-box-binding protein	AT1G55520.2	TATA binding protein 2 	LOC_Os12g39070.1	"TATA-binding protein, putative, expressed"	Medtr8g136970.1	TATA-box binding 	"GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003702|RNA polymerase II transcription factor activity	NA
PtpAffx.212213.1.S1_x_at	A	A1TS	POPTR_0019s04890	POPTR_0019s04890 (11)	scaffold_19:5121953-5123915(-) (11)	NA	P26357	TATA-box-binding protein	AT1G55520.2	TATA binding protein 2 	LOC_Os12g39070.1	"TATA-binding protein, putative, expressed"	Medtr8g136970.1	TATA-box binding 	"GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003702|RNA polymerase II transcription factor activity	NA
PtpAffx.212214.1.S1_at	A	A1TS	POPTR_0019s04910	POPTR_0019s04910 (11)	scaffold_19:5137597-5137797(+) (11)	NA	Q08632	Short-chain type dehydrogenase/reductase	AT3G03980.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g31780.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	AC233662_57.1	Short-chain dehydrogenase/reductase SDR AC233662.1 262132-261094 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.212215.1.S1_at	A	A1TS	POPTR_0019s04880	POPTR_0019s04880 (11)	scaffold_19:5120911-5120950(-) (11)	NA	NA	NA	AT2G23840.1	HNH endonuclease 	LOC_Os07g07480.1	"HNH endonuclease domain-containing protein, putative, expressed"	Medtr7g100320.1	HNH nuclease 	NA	GO:0004519|endonuclease activity||GO:0003676|nucleic acid binding	NA
PtpAffx.212215.1.S1_s_at	A	A1TS	POPTR_0019s04880	POPTR_0019s04880 (11)	scaffold_19:5120743-5120862(-) (11)	NA	NA	NA	AT2G23840.1	HNH endonuclease 	LOC_Os07g07480.1	"HNH endonuclease domain-containing protein, putative, expressed"	Medtr7g100320.1	HNH nuclease 	NA	GO:0004519|endonuclease activity||GO:0003676|nucleic acid binding	NA
PtpAffx.212216.1.S1_s_at	A	A1TS	POPTR_0019s04950	POPTR_0019s04950 (11)	scaffold_19:5159197-5160190(+) (11)	NA	NA	NA	AT1G54385.2	ARM repeat superfamily protein 	LOC_Os11g37100.1	expressed protein	Medtr6g030700.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212217.1.S1_at	A	A1TS	POPTR_0019s04950	POPTR_0019s04950 (9)	scaffold_19:5160285-5160557(+) (9)	NA	NA	NA	AT1G54385.2	ARM repeat superfamily protein 	LOC_Os11g37100.1	expressed protein	Medtr6g030700.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212218.1.S1_at	A	A1TS	POPTR_0019s04960	POPTR_0019s04960 (9)	scaffold_19:5161684-5162184(-) (11)	NA	NA	NA	AT1G55370.2	NDH-dependent cyclic electron flow 5 	LOC_Os03g53710.1	"aldose 1-epimerase, putative, expressed"	Medtr6g030670.1	Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212219.1.S1_at	A	A1TS	POPTR_0019s04990	POPTR_0019s04990 (11)	scaffold_19:5193316-5193860(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g53670.1	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212220.1.S1_at	A	A1TS	POPTR_0019s05030	POPTR_0019s05030 (11)	scaffold_19:5263411-5264144(+) (11)	NA	NA	NA	AT4G20970.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01870.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr4g108270.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.212222.1.S1_at	A	A1TS	POPTR_0019s05050	POPTR_0019s05050 (11)	scaffold_19:5270326-5270552(-) (11)	NA	Q43314	Glutamate dehydrogenase 1	AT5G18170.1	glutamate dehydrogenase 1 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.212223.1.S1_at	A	A1TS	POPTR_0019s05070	POPTR_0019s05070 (11)	scaffold_19:5308584-5309119(-) (11)	NA	Q8CXD3	Chaperone protein dnaJ	AT5G18140.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g12236.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g126720.1	Chaperone DnaJ 	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.212225.1.S1_at	A	A1TS	POPTR_0019s05160	POPTR_0019s05160 (11)	scaffold_19:5383994-5385223(+) (11)	NA	O22349	Tubulin alpha-3 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.212226.1.S1_at	A	A1TS	POPTR_0019s05170	POPTR_0019s05170 (11)	scaffold_19:5387334-5387873(-) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os07g10410.1	AP2 domain containing protein	Medtr7g102550.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.212227.1.S1_at	A	A1TS	POPTR_0019s05180	POPTR_0019s05180 (11)	scaffold_19:5400679-5402024(-) (11)	NA	NA	NA	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.1	"HEAT repeat family protein, putative, expressed"	Medtr7g102560.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212228.1.S1_at	A	A1TS	POPTR_0019s05220	POPTR_0019s05220 (11)	scaffold_19:5487722-5488413(+) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr7g102590.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.212229.1.S1_at	A	A1TS	POPTR_0019s05310	POPTR_0019s05310 (11)	scaffold_19:5620592-5621181(-) (11)	NA	Q38834	Disease resistance RPP13-like protein 4	AT5G45500.2	RNI-like superfamily protein 	LOC_Os01g58520.1	"disease resistance protein, putative, expressed"	Medtr3g041030.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.212230.1.S1_at	A	A1TS	POPTR_0019s05320	POPTR_0019s05320 (11)	scaffold_19:5631391-5631923(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g029960.1	"Putative disease resistance protein At3g14460, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212231.1.S1_at	A	A1MS	POPTR_0019s05330	POPTR_0019s05330 (11)	scaffold_19:5633060-5633640(+) (11)	NA	P50134	Ornithine decarboxylase	NA	NA	LOC_Os09g37120.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr3g157420.1	Orn/DAP/Arg decarboxylase 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212233.1.S1_at	A	A1TS	POPTR_0019s05370	POPTR_0019s05370 (11)	scaffold_19:5716231-5716815(-) (11)	NA	P80728	Mavicyanin	AT3G17675.1	Cupredoxin superfamily protein 	LOC_Os07g07170.1	"plastocyanin-like domain containing protein, putative"	Medtr7g102960.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.212234.1.S1_at	A	A1MS	POPTR_0019s05380	POPTR_0019s05380 (11)	scaffold_19:5724280-5724760(-) (11)	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.212235.1.S1_at	A	A1TS	POPTR_0019s05420	POPTR_0019s05420 (11)	scaffold_19:5745233-5752933(-) (11)	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g110860.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.212235.1.S1_x_at	A	A1TS	POPTR_0019s05420	POPTR_0019s05420 (11)	scaffold_19:5745233-5752933(-) (11)	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g110860.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.212239.1.S1_at	A	A1TS	POPTR_0019s05520	POPTR_0019s05520 (9)	scaffold_19:5888031-5889750(+) (10)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT3G03770.2	Leucine-rich repeat protein kinase family protein 	LOC_Os07g07230.2	"protein kinase, putative, expressed"	Medtr7g103210.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.212240.1.S1_at	A	A1TS	POPTR_0019s05530	POPTR_0019s05530 (11)	scaffold_19:5891352-5892509(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212241.1.S1_at	A	A1TS	POPTR_0019s05550	POPTR_0019s05550 (11)	scaffold_19:5929089-5932792(+) (11)	NA	NA	NA	AT1G28760.1	Uncharacterized conserved protein (DUF2215) 	LOC_Os03g45180.1	expressed protein	Medtr7g103260.1	"protein F1K23.6 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212242.1.S1_at	A	A1TS	POPTR_0019s05610	POPTR_0019s05610 (11)	scaffold_19:5964978-5968445(+) (11)	NA	B3TP03	Low affinity cationic amino acid transporter 2	AT3G03720.2	cationic amino acid transporter 4 	LOC_Os12g42850.1	"amino acid permease, putative, expressed"	Medtr7g103300.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.212243.1.S1_at	A	A1TS	POPTR_0019s05630	POPTR_0019s05630 (11)	scaffold_19:5992029-5992259(-) (11)	NA	Q5EA98	Microfibrillar-associated protein 1	AT5G17900.1	microfibrillar-associated protein-related 	LOC_Os02g17870.1	"microfibrillar-associated protein 1, putative, expressed"	Medtr4g132710.1	"Micro-fibrillar-associated 1, C-terminal "	NA	NA	GO:0005576|extracellular region
PtpAffx.212244.1.S1_at	A	A1TS	POPTR_0019s05650	POPTR_0019s05650 (11)	scaffold_19:6008985-6010648(-) (11)	NA	Q6MDI2	Polyribonucleotide nucleotidyltransferase	AT3G03710.1	"polyribonucleotide nucleotidyltransferase, putative "	LOC_Os07g07310.1	"polynucleotide phosphorylase, putative, expressed"	Medtr7g103420.1	Polyribonucleotide nucleotidyltransferase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.212245.1.S1_at	A	A1MS	POPTR_0019s05650	POPTR_0019s05650 (9)	scaffold_19:6011118-6011690(-) (9)	NA	Q6MDI2	Polyribonucleotide nucleotidyltransferase	AT3G03710.1	"polyribonucleotide nucleotidyltransferase, putative "	LOC_Os07g07310.1	"polynucleotide phosphorylase, putative, expressed"	Medtr7g103420.1	Polyribonucleotide nucleotidyltransferase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.212246.1.S1_at	A	A1TS	POPTR_0019s05680	POPTR_0019s05680 (11)	scaffold_19:6048001-6048682(-) (11)	NA	Q9SYG9	Cation/calcium exchanger 4	AT1G54115.1	cation calcium exchanger 4 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr7g103490.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.212247.1.S1_at	A	A1TS	POPTR_0019s05700	POPTR_0019s05700 (11)	scaffold_19:6056599-6057273(-) (11)	NA	Q4WYG7	Protein pns1	AT3G04440.1	Plasma-membrane choline transporter family protein 	LOC_Os07g46240.1	"choline transporter-related, putative, expressed"	Medtr7g103510.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212249.1.S1_at	A	A1TS	POPTR_0019s05720	POPTR_0019s05720 (9)	scaffold_19:6076196-6077176(+) (9)	NA	Q8LFV3	Dof zinc finger protein DOF3.3	AT3G47500.1	cycling DOF factor 3 	LOC_Os01g15900.1	expressed protein	Medtr7g103580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.212250.1.S1_at	A	A1TS	POPTR_0019s05730	POPTR_0019s05730 (11)	scaffold_19:6117848-6119399(+) (11)	NA	Q6X7J3	WUSCHEL-related homeobox 11	AT3G03660.1	WUSCHEL related homeobox 11 	LOC_Os07g48560.1	"homeobox domain containing protein, expressed"	Medtr7g103730.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.212251.1.S1_at	A	A1TS	POPTR_0019s05740	POPTR_0019s05740 (11)	scaffold_19:6138220-6138897(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G69560.1	myb domain protein 105 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr7g103750.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212252.1.S1_at	A	A1TS	POPTR_0019s05760	POPTR_0019s05760 (11)	scaffold_19:6174683-6174917(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212253.1.S1_at	A	A1TS	POPTR_0019s05780	POPTR_0019s05780 (10)	scaffold_19:6189349-6189527(-) (11)	NA	NA	NA	AT2G33580.1	Protein kinase superfamily protein 	NA	NA	Medtr7g089090.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212254.1.S1_at	A	A1TS	POPTR_0019s05790	POPTR_0019s05790 (11)	scaffold_19:6195752-6196057(+) (11)	NA	Q59MG1	Diphthamide biosynthesis protein 1	AT5G62030.1	diphthamide synthesis DPH2 family protein 	LOC_Os02g57050.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr5g008080.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212254.1.S1_s_at	A	A1TS	POPTR_0019s05790	POPTR_0019s05790 (11)	scaffold_19:6196056-6196440(+) (11)	NA	Q59MG1	Diphthamide biosynthesis protein 1	AT5G62030.1	diphthamide synthesis DPH2 family protein 	LOC_Os02g57050.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr5g008080.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212255.1.S1_at	A	A1TS	POPTR_0019s05820	POPTR_0019s05820 (11)	scaffold_19:6234004-6238025(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212256.1.S1_at	A	A1TS	POPTR_0019s05850	POPTR_0019s05850 (11)	scaffold_19:6271836-6272178(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212259.1.S1_x_at	A	A1TS	POPTR_0019s05920	POPTR_0019s05920 (11)	scaffold_19:6341729-6342170(+) (11)	NA	NA	NA	AT3G47680.1	DNA binding 	LOC_Os12g12690.1	"transposon protein, putative, Pong sub-class, expressed"	Medtr4g114770.1	"Homeodomain-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212261.1.S1_at	A	A1TS	POPTR_0019s06000	POPTR_0019s06000 (11)	scaffold_19:6447164-6447680(+) (11)	NA	Q9LER0	"Pentatricopeptide repeat-containing protein At5g14770, mitochondrial"	AT5G14770.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g57800.1	"PPR repeat containing protein, expressed"	AC233659_7.1	Pentatricopeptide repeat AC233659.1 31198-26001 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212262.1.S1_at	A	A1TS	POPTR_0019s06010	POPTR_0019s06010 (11)	scaffold_19:6470555-6471067(+) (11)	NA	Q5ZII9	Tuftelin-interacting protein 11	AT1G17070.1	GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain 	LOC_Os12g42140.1	"G-patch domain containing protein, putative, expressed"	Medtr7g076410.1	D111/G-patch 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.212263.1.S1_at	A	A1TS	POPTR_0019s06030	POPTR_0019s06030 (9)	scaffold_19:6485902-6486964(-) (9)	NA	Q9P6P3	Serine/threonine-protein kinase ppk15	AT5G35980.1	yeast YAK1-related gene 1 	LOC_Os02g47410.1	"protein kinase, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212264.1.S1_s_at	A	A1TS	POPTR_0019s06050	POPTR_0019s06050 (11)	scaffold_19:6533725-6534129(-) (11)//scaffold_905:8305-8709(+) (11)	NA	NA	NA	AT5G17590.1	Putative membrane lipoprotein 	NA	NA	Medtr8g011470.1	prothymosin alpha-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212265.1.S1_at	A	A1TS	POPTR_0019s06060	POPTR_0019s06060 (10)	scaffold_19:6539043-6542666(-) (10)	NA	Q4L235	Acyl-CoA synthetase family member 4	AT5G35930.1	AMP-dependent synthetase and ligase family protein 	LOC_Os06g02160.4	"AMP-binding enzyme family protein, expressed"	Medtr8g150990.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like; Quinonprotein alcohol dehydrogenase-like 	GO:0008152|metabolic process	GO:0048037|cofactor binding||GO:0003824|catalytic activity	NA
PtpAffx.212266.1.S1_at	A	A1TS	POPTR_0019s06070	POPTR_0019s06070 (11)	scaffold_19:6574124-6574649(-) (11)	NA	Q9SRQ8	RING-H2 finger protein ATL51	AT3G03550.1	RING/U-box superfamily protein 	LOC_Os04g50100.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g029880.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212267.1.S1_at	A	A1TS	POPTR_0019s06080	POPTR_0019s06080 (11)	scaffold_19:6589706-6590217(-) (11)	NA	Q8GX29	F-box/kelch-repeat protein SKIP25	AT1G31350.1	KAR-UP F-box 1 	LOC_Os06g49750.1	"kelch motif family protein, expressed"	Medtr5g026710.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212268.1.S1_at	A	A1TS	POPTR_0019s06130	POPTR_0019s06130 (11)	scaffold_19:6683759-6684386(-) (11)	NA	NA	NA	AT5G17910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1). 	LOC_Os01g59670.1	expressed protein	Medtr7g104360.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212269.1.S1_at	A	A2TS	POPTR_0019s06150	POPTR_0019s06150 (11)//POPTR_0003s00520 (9)	scaffold_19:6716611-6718103(-) (11)//scaffold_3:319737-319937(+) (9)	NA	Q8W3M6	Ubiquitin-like domain-containing CTD phosphatase	AT4G06599.1	ubiquitin family protein 	LOC_Os01g65450.1	"ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed"	Medtr4g137220.1	Ubiquitin; NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212269.1.S1_x_at	A	A1TS	POPTR_0019s06150	POPTR_0019s06150 (11)	scaffold_19:6716611-6718182(-) (11)	POPTR_0003s00520 (6)	Q8W3M6	Ubiquitin-like domain-containing CTD phosphatase	AT4G06599.1	ubiquitin family protein 	LOC_Os01g65450.1	"ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed"	Medtr4g137220.1	Ubiquitin; NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212270.1.S1_at	A	A1MA	POPTR_0019s06160	POPTR_0019s06160 (9)	scaffold_19:6726161-6726249(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212272.1.S1_at	A	A1TS	POPTR_0019s06180	POPTR_0019s06180 (11)	scaffold_19:6737096-6738000(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g33220.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.212274.1.S1_s_at	A	A2TS	POPTR_0019s07850	POPTR_0019s07850 (11)//POPTR_0019s07870 (11)	scaffold_19:9077220-9078923(+) (11)//scaffold_19:9090110-9092197(-) (11)	NA	O04300	"Alpha-1,4-glucan-protein synthase [UDP-forming]"	AT5G16510.2	"Alpha-1,4-glucan-protein synthase family protein "	LOC_Os04g56520.2	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr7g089260.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
PtpAffx.212275.1.S1_at	A	A1TS	POPTR_0019s07880	POPTR_0019s07880 (11)	scaffold_19:9122631-9123044(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os08g16460.1	"NBS-LRR disease resistance protein, putative"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.212276.1.S1_at	A	A1TS	POPTR_0019s07940	POPTR_0019s07940 (11)	scaffold_19:9224970-9227017(+) (11)	NA	NA	NA	AT5G36100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65090.3); Has 57 Blast hits to 49 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g32200.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212277.1.S1_at	A	A1TS	POPTR_0019s07960	POPTR_0019s07960 (11)	scaffold_19:9261681-9263054(+) (11)	NA	Q9NRP7	Serine/threonine-protein kinase 36	AT1G50240.2	Protein kinase family protein with ARM repeat domain 	LOC_Os12g24550.1	expressed protein	Medtr2g025470.1	Protein kinase; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212278.1.S1_at	A	A1MS	POPTR_0019s07970	POPTR_0019s07970 (9)	scaffold_19:9271506-9272941(+) (10)	NA	NA	NA	AT1G50240.2	Protein kinase family protein with ARM repeat domain 	LOC_Os12g24550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212281.1.S1_at	A	A1TS	POPTR_0019s08070	POPTR_0019s08070 (11)	scaffold_19:9443259-9444693(+) (11)	NA	NA	NA	AT3G02790.1	zinc finger (C2H2 type) family protein 	LOC_Os06g49490.1	"ZOS6-10 - C2H2 zinc finger protein, expressed"	Medtr7g089600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212283.1.S1_at	A	A1MS	POPTR_0019s08110	POPTR_0019s08110 (9)	scaffold_19:9529076-9529154(+) (9)	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.212283.1.S1_x_at	A	A1MS	POPTR_0019s08110	POPTR_0019s08110 (10)	scaffold_19:9529076-9529577(+) (10)	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.212284.1.S1_at	A	A1TS	POPTR_0019s08120	POPTR_0019s08120 (11)	scaffold_19:9547410-9548782(+) (11)	NA	Q55158	Riboflavin biosynthesis protein ribD	AT3G47390.2	cytidine/deoxycytidylate deaminase family protein 	LOC_Os02g27340.1	"riboflavin biosynthesis protein ribD, putative, expressed"	Medtr7g089780.1	"CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal; Conserved hypothetical protein CHP02464 "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008703|5-amino-6-(5-phosphoribosylamino)uracil reductase activity||GO:0008270|zinc ion binding||GO:0016787|hydrolase activity	NA
PtpAffx.212285.1.S1_at	A	A1TS	POPTR_0019s08160	POPTR_0019s08160 (11)	scaffold_19:9608034-9609183(-) (11)	NA	P37890	Serine carboxypeptidase 1	AT4G12910.1	serine carboxypeptidase-like 20 	LOC_Os12g15470.2	"OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr7g089840.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.212286.1.S1_at	A	A1TS	POPTR_0019s08230	POPTR_0019s08230 (11)	scaffold_19:9701210-9701847(+) (11)	NA	B0KWH8	THO complex subunit 2	AT1G24706.1	THO2 	LOC_Os01g68810.1	expressed protein	Medtr4g156300.1	"F5A9.21, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212287.1.S1_at	A	A1TS	POPTR_0019s08250	POPTR_0019s08250 (11)	scaffold_19:9728134-9728725(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT1G05840.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g27360.1	"aspartic proteinase-like protein 2 precursor, putative, expressed"	Medtr7g021310.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212288.1.S1_at	A	A1TS	POPTR_0019s08250	POPTR_0019s08250 (9)	scaffold_19:9728834-9729000(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT1G05840.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g27360.1	"aspartic proteinase-like protein 2 precursor, putative, expressed"	Medtr7g021310.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212289.1.S1_at	A	A1TS	POPTR_0019s08260	POPTR_0019s08260 (11)	scaffold_19:9738029-9739242(-) (11)	NA	Q9CYI4	Putative RNA-binding protein Luc7-like 1	AT3G03340.1	LUC7 related protein 	LOC_Os03g62640.4	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212290.1.S1_at	A	A1TS	POPTR_0019s08340	POPTR_0019s08340 (11)	scaffold_19:9848039-9848455(-) (11)	NA	Q8VZR7	Probable peptide/nitrate transporter At2g40460	AT2G40460.1	Major facilitator superfamily protein 	LOC_Os10g33210.1	"peptide transporter PTR3-A, putative, expressed"	Medtr3g097370.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.212291.1.S1_at	A	A1TS	POPTR_0019s08370	POPTR_0019s08370 (11)	scaffold_19:9910995-9912932(-) (11)	NA	NA	NA	AT3G56250.1	unknown protein; Has 109 Blast hits to 83 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 18; Fungi - 20; Plants - 21; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212292.1.S1_at	A	A1TS	POPTR_0019s08380	POPTR_0019s08380 (11)	scaffold_19:9919923-9920405(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g02040.1	"hypoxia-responsive family protein, putative, expressed"	Medtr3g097310.1	"hypoxia-responsive family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212293.1.S1_at	A	A1TS	POPTR_0019s08390	POPTR_0019s08390 (11)	scaffold_19:9920668-9920874(-) (11)//scaffold_539:518-685(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212294.1.S1_at	A	A1TS	POPTR_0019s08400	POPTR_0019s08400 (10)	scaffold_19:9927006-9927158(-) (10)	NA	Q5ZJV4	UPF0557 protein C10orf119 homolog	AT2G40550.1	E2F target gene 1 	LOC_Os01g07260.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212295.1.S1_at	A	A1TS	POPTR_0019s08440	POPTR_0019s08440 (11)	scaffold_19:9980884-9981749(-) (11)	NA	Q5ZJV4	UPF0557 protein C10orf119 homolog	AT2G40550.1	E2F target gene 1 	LOC_Os01g07260.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212295.1.S1_s_at	A	A2TS	POPTR_0019s08400	POPTR_0019s08400 (11)//POPTR_0019s08440 (11)	scaffold_19:9927506-9928136(-) (11)//scaffold_19:9981420-9982050(-) (11)	NA	Q5ZJV4	UPF0557 protein C10orf119 homolog	AT2G40550.1	E2F target gene 1 	LOC_Os01g07260.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212296.1.S1_at	A	A1MS	POPTR_0019s08470	POPTR_0019s08470 (11)	scaffold_19:10004319-10005374(-) (11)	NA	NA	NA	AT3G56320.1	PAP/OAS1 substrate-binding domain superfamily 	LOC_Os03g21850.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212297.1.S1_at	A	A1TS	POPTR_0019s08590	POPTR_0019s08590 (9)	scaffold_19:10103292-10105493(-) (10)	NA	Q6S4P4	Transcription factor RF2b	AT2G40620.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g21800.2	"bZIP transcription factor family protein, putative, expressed"	Medtr5g083200.1	Basic leucine zipper 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212299.1.S1_at	A	A1TS	POPTR_0019s08620	POPTR_0019s08620 (11)	scaffold_19:10152110-10152733(+) (11)	NA	Q6WG30	Taxadiene 5-alpha hydroxylase	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33440.1	"cytochrome P450, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.212301.1.S1_at	A	A1TS	POPTR_0019s08660	POPTR_0019s08660 (11)	scaffold_19:10189366-10189632(+) (11)	NA	NA	NA	AT3G51580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). 	NA	NA	Medtr7g080400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212302.1.S1_x_at	A	A1TS	POPTR_0019s08670	POPTR_0019s08670 (11)	scaffold_19:10199743-10200321(-) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT3G56370.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g080410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.212303.1.S1_at	A	A1TS	POPTR_0019s08690	POPTR_0019s08690 (11)	scaffold_19:10224466-10225208(+) (11)	NA	Q9FPR6	Two-component response regulator ARR17	AT3G56380.1	response regulator 17 	LOC_Os12g04500.1	response regulator receiver domain containing protein	Medtr5g037580.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.212304.1.S1_at	A	A1TS	POPTR_0019s08720	POPTR_0019s08720 (11)	scaffold_19:10239442-10241506(-) (11)	NA	Q55GS2	Probable inactive serine/threonine-protein kinase scy1	AT2G40730.1	Protein kinase family protein with ARM repeat domain 	LOC_Os01g60440.1	"HEAT repeat family protein, putative, expressed"	AC235754_13.1	Armadillo-like helical AC235754.1 40000-47052 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212305.1.S1_at	A	A1TS	POPTR_0019s08730	POPTR_0019s08730 (11)	scaffold_19:10262780-10263341(+) (11)	NA	Q9SHB5	WRKY transcription factor 55	AT2G40740.1	WRKY DNA-binding protein 55 	LOC_Os05g25700.1	OsWRKY75 - Superfamily of TFs having WRKY and zinc finger domains	Medtr5g076570.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.212307.1.S1_s_at	A	A6TS	POPTR_0019s08790	POPTR_0019s08840 (11)//POPTR_0019s08910 (11)//POPTR_0019s08790 (11)//POPTR_2347s00200 (11)//POPTR_0019s08820 (11)//POPTR_1470s00200 (11)	scaffold_1470:4064-4100(-) (11)//scaffold_19:10343974-10344010(-) (11)//scaffold_19:10366228-10366264(-) (11)//scaffold_19:10384090-10384126(-) (11)//scaffold_19:10479700-10479736(-) (11)//scaffold_2347:2753-2789(+) (11)	NA	Q149N8	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076790.1	"Helicase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212309.1.S1_s_at	A	A3TS	POPTR_0019s08840	POPTR_2192s00200 (11)//POPTR_0019s08840 (11)//POPTR_0019s08790 (10)	scaffold_1470:3383-3458(-) (10)//scaffold_19:10343293-10343368(-) (10)//scaffold_19:10365493-10365568(-) (11)//scaffold_19:10383355-10383430(-) (11)//scaffold_2192:1718-1793(-) (11)	POPTR_0019s08910 (7)//POPTR_0780s00210 (6)	Q7TPQ3	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076790.1	"Helicase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212311.1.S1_at	A	A1TS	POPTR_0019s09795	POPTR_0019s09795 (11)	scaffold_19:11403610-11403674(+) (11)	NA	NA	NA	AT4G19470.1	Leucine-rich repeat (LRR) family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212312.1.S1_at	A	A1MS	POPTR_0019s09810	POPTR_0019s09810 (11)	scaffold_19:11413619-11414222(+) (11)	NA	Q6YM50	"Mannan endo-1,4-beta-mannosidase 5"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr4g118250.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212313.1.S1_at	A	A1TS	POPTR_0019s09830	POPTR_0019s09830 (11)	scaffold_19:11422488-11422821(+) (11)	NA	Q7XJ98	Xyloglucan galactosyltransferase KATAMARI1	AT1G68470.1	Exostosin family protein 	LOC_Os03g05070.1	"exostosin family domain containing protein, expressed"	Medtr5g068080.1	Exostosin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212313.1.S1_s_at	A	A3TS	POPTR_0001s39070	POPTR_0001s39100 (11)//POPTR_0019s09830 (11)//POPTR_0001s39070 (11)	scaffold_1:38311223-38311552(-) (11)//scaffold_1:38331722-38332051(-) (11)//scaffold_19:11422398-11422727(+) (11)	NA	Q8H038	Xyloglucan galactosyltransferase KATAMARI1 homolog	AT1G68470.1	Exostosin family protein 	LOC_Os03g05110.1	"xyloglucan galactosyltransferase KATAMARI1, putative, expressed"	Medtr7g117070.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.212315.1.S1_at	A	A1MS	POPTR_0019s09870	POPTR_0019s09870 (10)	scaffold_19:11464450-11464843(+) (9)//scaffold_19:11491391-11491818(+) (10)	NA	Q9FH83	Probable WRKY transcription factor 52	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.212316.1.S1_at	A	A1TS	POPTR_0019s09890	POPTR_0019s09890 (11)	scaffold_19:11505053-11505215(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212318.1.S1_at	A	A1TS	POPTR_0019s09960	POPTR_0019s09960 (9)	scaffold_19:11604300-11604476(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212319.1.S1_at	A	A1TS	POPTR_0019s09980	POPTR_0019s09980 (11)	scaffold_19:11622027-11622706(+) (11)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.212320.1.S1_at	A	A1TS	POPTR_0019s10010	POPTR_0019s10010 (11)	scaffold_19:11632666-11635991(-) (11)	NA	P93422	Histidyl-tRNA synthetase	AT3G02760.1	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os05g05840.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr5g099140.1	"tRNA synthetase, class II (G, H, P and S) "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.212321.1.S1_at	A	A1TS	POPTR_0019s10150	POPTR_0019s10150 (11)	scaffold_19:11722244-11722478(-) (11)	NA	Q5U378	Tubulin-specific chaperone E	AT1G71440.1	tubulin folding cofactor E / Pfifferling (PFI) 	LOC_Os05g01500.1	"tubulin-specific chaperone E, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.212322.1.S1_at	A	A1TS	POPTR_0019s10200	POPTR_0019s10200 (11)	scaffold_19:11766662-11767517(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G71530.1	Protein kinase superfamily protein 	LOC_Os08g02050.1	"protein kinase family protein, putative, expressed"	Medtr5g008910.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212323.1.S1_at	A	A1TS	POPTR_0019s10210	POPTR_0019s10210 (11)	scaffold_19:11776047-11778029(+) (11)	NA	A4IGM4	Hydroxysteroid 11-beta-dehydrogenase 1-like protein	AT4G10020.1	hydroxysteroid dehydrogenase 5 	LOC_Os03g62590.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.212324.1.S1_at	A	A2TS	POPTR_0019s10225	POPTR_0019s10260 (11)//POPTR_0019s10225 (11)	scaffold_19:11800818-11801021(-) (11)//scaffold_19:11835331-11835534(-) (11)	NA	A2YGR5	Squamosa promoter-binding-like protein 12	NA	NA	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212325.1.S1_s_at	A	A2TS	POPTR_0019s10290	POPTR_0019s10300 (9)//POPTR_0019s10290 (9)	scaffold_19:11869814-11870834(+) (9)//scaffold_19:11887668-11888691(+) (9)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.212328.1.S1_at	A	A1TS	POPTR_0019s10360	POPTR_0019s10360 (11)	scaffold_19:11921450-11922392(-) (11)	NA	Q2TAP9	Abhydrolase domain-containing protein 11	AT4G10030.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g66240.1	"mitochondrion protein, putative, expressed"	Medtr5g008770.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212333.1.S1_at	A	A1TS	POPTR_0019s10410	POPTR_0019s10410 (10)	scaffold_19:11982373-11982950(+) (10)	NA	Q9C9I3	"Pentatricopeptide repeat-containing protein At1g71460, chloroplastic"	AT1G71460.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os12g10184.1	"pentatricopeptide, putative, expressed"	Medtr4g022170.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212334.1.S1_at	A	A1TS	POPTR_0019s10420	POPTR_0019s10420 (11)	scaffold_19:11997183-11997405(+) (11)	NA	Q9C9I2	Ethylene-responsive transcription factor ERF021	AT1G71450.1	Integrase-type DNA-binding superfamily protein 	LOC_Os11g13840.1	"AP2 domain containing protein, expressed"	Medtr5g008620.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.212335.1.S1_at	A	A1TS	POPTR_0019s10440	POPTR_0019s10440 (11)	scaffold_19:12020272-12021231(+) (11)	NA	NA	NA	AT1G24160.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70100.3). 	LOC_Os02g35230.1	expressed protein	Medtr5g037670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212336.1.S1_at	A	A1TS	POPTR_0019s10440	POPTR_0019s10440 (11)	scaffold_19:12022608-12024334(+) (11)	NA	NA	NA	AT1G24160.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70100.3). 	LOC_Os02g35230.1	expressed protein	Medtr5g037670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212338.1.S1_at	A	A1TS	POPTR_0019s10460	POPTR_0019s10460 (11)	scaffold_19:12030070-12030601(-) (11)	NA	Q0WVK7	"Pentatricopeptide repeat-containing protein At1g05665, mitochondrial"	AT1G05670.2	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os03g02762.1	"PPR repeat domain containing protein, putative, expressed"	AC233657_42.1	hypothetical protein AC233657.1 211242-209896 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212339.1.S1_at	A	A1TS	POPTR_0019s10465	POPTR_0019s10465 (10)	scaffold_19:12032407-12032565(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212340.1.S1_at	A	A1MS	POPTR_0019s10480	POPTR_0019s10480 (11)	scaffold_19:12039820-12040224(-) (11)	NA	Q9H974	Queuine tRNA-ribosyltransferase subunit QTRTD1	NA	NA	LOC_Os10g05220.2	"queuine tRNA-ribosyltransferase, putative, expressed"	Medtr4g032270.1	"Queuine/other tRNA-ribosyltransferase; Cytochrome b/b6, N-terminal "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044260|cellular macromolecule metabolic process||GO:0008616|queuosine biosynthetic process	GO:0008479|queuine tRNA-ribosyltransferase activity	NA
PtpAffx.212341.1.S1_at	A	A1TS	POPTR_0019s10480	POPTR_0019s10480 (10)	scaffold_19:12041077-12044634(-) (11)	NA	Q9H974	Queuine tRNA-ribosyltransferase subunit QTRTD1	NA	NA	LOC_Os10g05220.2	"queuine tRNA-ribosyltransferase, putative, expressed"	Medtr4g032270.1	"Queuine/other tRNA-ribosyltransferase; Cytochrome b/b6, N-terminal "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044260|cellular macromolecule metabolic process||GO:0008616|queuosine biosynthetic process	GO:0008479|queuine tRNA-ribosyltransferase activity	NA
PtpAffx.212342.1.S1_at	A	A1TS	POPTR_0019s10510	POPTR_0019s10510 (11)	scaffold_19:12061910-12062472(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212343.1.S1_at	A	A1TS	POPTR_0019s10520	POPTR_0019s10520 (11)	scaffold_19:12070266-12070858(-) (11)	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT1G71691.2	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os05g34700.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g013140.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.212344.1.S1_at	A	A1MS	POPTR_0019s10530	POPTR_0019s10530 (9)	scaffold_19:12077868-12078296(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212345.1.S1_s_at	A	A1TS	POPTR_0019s10540	POPTR_0019s10540 (11)	scaffold_19:12079577-12082707(-) (11)	NA	Q38841	Agamous-like MADS-box protein AGL12	AT1G71692.1	AGAMOUS-like 12 	LOC_Os12g10520.1	"OsMADS33 - MADS-box family gene with MIKCc type-box, expressed"	Medtr7g014840.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.212347.1.S1_at	A	A1TS	POPTR_0019s10620	POPTR_0019s10620 (11)	scaffold_19:12151951-12153010(-) (11)	NA	B0S733	Regulator of nonsense transcripts 3A	AT1G33980.1	Smg-4/UPF3 family protein 	LOC_Os04g35920.2	"nonsense-mediated decay UPF3, putative, expressed"	Medtr3g013020.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212348.1.S1_at	A	A1TS	POPTR_0019s10630	POPTR_0019s10630 (11)	scaffold_19:12159609-12159700(-) (11)	NA	Q5R830	Xylulose kinase	AT5G49650.1	xylulose kinase-2 	LOC_Os07g44660.1	"FGGY family of carbohydrate kinases, putative, expressed"	Medtr3g127920.2	"Carbohydrate kinase, FGGY "	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.212348.1.S1_s_at	A	A1TS	POPTR_0019s10630	POPTR_0019s10630 (11)	scaffold_19:12159695-12160744(-) (11)	NA	Q5R830	Xylulose kinase	AT5G49650.1	xylulose kinase-2 	LOC_Os07g44660.1	"FGGY family of carbohydrate kinases, putative, expressed"	Medtr3g127920.2	"Carbohydrate kinase, FGGY "	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.212349.1.S1_x_at	A	A1TS	POPTR_0019s10640	POPTR_0019s10640 (11)	scaffold_19:12166365-12167991(-) (11)	NA	Q641I1	Protein FAM135B	AT1G58350.2	Putative serine esterase  family protein 	LOC_Os12g06800.1	"serine esterase family protein, putative, expressed"	Medtr3g127940.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212350.1.S1_at	A	A1TS	POPTR_0019s10660	POPTR_0019s10660 (9)	scaffold_19:12179334-12180148(+) (10)	NA	Q08080	"Stromal 70 kDa heat shock-related protein, chloroplastic (Fragment)"	AT4G24280.1	chloroplast heat shock protein 70-1 	LOC_Os12g14070.1	"DnaK family protein, putative, expressed"	Medtr2g005480.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212351.1.S1_at	A	A1TS	POPTR_0019s10680	POPTR_0019s10680 (11)	scaffold_19:12187221-12188087(-) (11)	NA	Q15GI4	Eugenol synthase 1	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009470.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.212351.1.S1_s_at	A	A1TS	POPTR_0019s10680	POPTR_0019s10680 (11)	scaffold_19:12188098-12190162(-) (11)//scaffold_621:21-2077(-) (10)	NA	Q15GI4	Eugenol synthase 1	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009470.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.212352.1.S1_at	A	A1TS	POPTR_0019s10710	POPTR_0019s10710 (11)	scaffold_19:12204446-12204952(-) (11)	NA	Q9FIJ6	Serine/threonine-protein kinase-like protein CCR4	AT5G47850.1	CRINKLY4 related 4 	LOC_Os04g35890.1	"TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr4g041620.1	Tyrosine protein kinase; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212353.1.S1_at	A	A1TS	POPTR_0019s10740	POPTR_0019s10740 (10)	scaffold_19:12258003-12262471(-) (10)	NA	Q9JK91	DNA mismatch repair protein Mlh1	AT4G09140.1	MUTL-homologue 1 	LOC_Os01g72880.1	"DNA mismatch repair protein Mlh1, putative, expressed"	Medtr3g013270.1	DNA mismatch repair protein; ; ; 	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.212354.1.S1_at	A	A1TS	POPTR_0019s10770	POPTR_0019s10770 (11)	scaffold_19:12278701-12279857(+) (11)	NA	NA	NA	AT1G35340.1	ATP-dependent protease La (LON) domain protein 	LOC_Os11g11210.1	"OsClp12 - Putative Clp protease homologue, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212355.1.S1_at	A	A1TS	POPTR_0019s10820	POPTR_0019s10820 (10)	scaffold_19:12324576-12325292(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212356.1.S1_at	A	A2TS	POPTR_0019s10870	POPTR_0019s10870 (11)//POPTR_1576s00200 (11)	scaffold_1576:4191-4677(-) (11)//scaffold_19:12355232-12362058(-) (11)	POPTR_0019s10860 (8)	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65100.1	"peptide transporter, putative, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.212357.1.S1_at	A	A1TS	POPTR_0019s10900	POPTR_0019s10900 (11)	scaffold_19:12381989-12382171(+) (11)	NA	Q9C8P8	Transcription factor bHLH80	AT1G35460.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g147140.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212358.1.S1_at	A	A1TS	POPTR_0019s10920	POPTR_0019s10920 (11)	scaffold_19:12397081-12397220(-) (11)	NA	Q5VV42	CDK5 regulatory subunit-associated protein 1-like 1	AT1G72090.1	Methylthiotransferase 	LOC_Os04g35480.1	"CDK5RAP1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212359.1.S1_at	A	A1TS	POPTR_0019s10920	POPTR_0019s10920 (11)	scaffold_19:12397670-12399782(-) (11)	NA	Q5VV42	CDK5 regulatory subunit-associated protein 1-like 1	AT1G72090.1	Methylthiotransferase 	LOC_Os04g35480.1	"CDK5RAP1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212360.1.S1_at	A	A1TS	POPTR_0019s10930	POPTR_0019s10930 (11)	scaffold_19:12401182-12401465(-) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT1G22620.1	Phosphoinositide phosphatase family protein 	LOC_Os08g01750.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212362.1.S1_at	A	A1TS	POPTR_0019s10990	POPTR_0019s10990 (11)	scaffold_19:12429990-12430117(+) (11)	NA	Q9SZH0	V-type proton ATPase subunit G3	AT4G25950.1	vacuolar ATP synthase G3 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
PtpAffx.212362.1.S1_x_at	A	A1TS	POPTR_0019s10990	POPTR_0019s10990 (11)	scaffold_19:12429747-12430115(+) (11)	NA	Q9SZH0	V-type proton ATPase subunit G3	AT4G25950.1	vacuolar ATP synthase G3 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
PtpAffx.212363.1.S1_s_at	A	A1TS	POPTR_0019s11020	POPTR_0019s11020 (11)	scaffold_19:12440289-12441668(-) (11)	POPTR_0603s00210 (8)	Q8W486	DUF246 domain-containing protein At1g04910	AT1G35510.1	O-fucosyltransferase family protein 	LOC_Os12g07540.1	"growth regulator related protein, putative, expressed"	Medtr1g034900.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212365.1.S1_at	A	A1TS	POPTR_0019s11040	POPTR_0019s11040 (11)	scaffold_19:12459352-12460040(+) (11)	NA	Q8VHT8	Transcription factor IIIA	AT1G72050.2	transcription factor IIIA 	LOC_Os02g02424.1	"ZOS2-02 - C2H2 zinc finger protein, expressed"	Medtr3g005750.1	"Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.212367.1.S1_at	A	A1TS	POPTR_0019s11080	POPTR_0019s11080 (11)	scaffold_19:12474718-12474860(+) (11)	NA	NA	NA	AT1G14060.1	GCK domain-containing protein 	LOC_Os07g06460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212369.1.S1_at	A	A1TS	POPTR_0019s11090	POPTR_0019s11090 (11)	scaffold_19:12483717-12484058(+) (11)	NA	Q9S9K9	Transcription factor MYB3	AT1G22640.1	myb domain protein 3 	LOC_Os11g07890.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212370.1.S1_at	A	A1TS	POPTR_0019s11100	POPTR_0019s11100 (11)	scaffold_19:12499147-12500780(+) (11)	NA	Q9J579	Probable deoxycytidine kinase FPV151	AT1G72040.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g65350.1	"deoxynucleoside kinase family, putative, expressed"	Medtr3g012840.1	Deoxynucleoside kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0005524|ATP binding||GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.212372.1.S1_at	A	A1TS	POPTR_0019s11150	POPTR_0019s11150 (10)	scaffold_19:12526668-12526701(-) (10)	NA	NA	NA	AT4G09510.1	cytosolic invertase 2 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212373.1.S1_at	A	A1TS	POPTR_0019s11160	POPTR_0019s11160 (11)	scaffold_19:12549244-12549378(-) (11)	NA	P33083	Auxin-induced protein 6B	AT4G09530.1	SAUR-like auxin-responsive protein family  	LOC_Os02g05050.1	OsSAUR4 - Auxin-responsive SAUR gene family member	Medtr3g163140.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212373.1.S1_x_at	A	A1TS	POPTR_0019s11160	POPTR_0019s11160 (11)	scaffold_19:12549244-12549421(-) (11)	NA	P33083	Auxin-induced protein 6B	AT4G09530.1	SAUR-like auxin-responsive protein family  	LOC_Os02g05050.1	OsSAUR4 - Auxin-responsive SAUR gene family member	Medtr3g163140.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212374.1.S1_at	A	A1TS	POPTR_0019s11180	POPTR_0019s11180 (11)	scaffold_19:12564925-12565756(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g120710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212376.1.S1_at	A	A1TS	POPTR_0019s11250	POPTR_0019s11250 (11)	scaffold_19:12598748-12599342(-) (11)	NA	NA	NA	AT1G22680.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71970.1); Has 44 Blast hits to 44 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212377.1.S1_at	A	A1TS	POPTR_0019s11270	POPTR_0019s11270 (11)	scaffold_19:12620082-12620531(+) (11)	NA	Q84TH5	ABC transporter G family member 25	AT1G71960.1	ATP-binding casette family G25 	LOC_Os11g07600.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.212377.1.S1_s_at	A	A1TS	POPTR_0019s11270	POPTR_0019s11270 (11)	scaffold_19:12620339-12620482(+) (11)	NA	Q84TH5	ABC transporter G family member 25	AT1G71960.1	ATP-binding casette family G25 	LOC_Os11g07600.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.212377.1.S1_x_at	A	A1TS	POPTR_0019s11270	POPTR_0019s11270 (11)	scaffold_19:12620082-12620563(+) (11)	NA	Q84TH5	ABC transporter G family member 25	AT1G71960.1	ATP-binding casette family G25 	LOC_Os11g07600.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.212378.1.S1_at	A	A1TS	POPTR_0019s11280	POPTR_0019s11280 (11)	scaffold_19:12626780-12627745(+) (11)	NA	Q6GQV7	Erythroid differentiation-related factor 1	AT1G35660.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 309 Blast hits to 256 proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). 	LOC_Os01g65320.1	expressed protein	Medtr1g068580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212379.1.S1_at	A	A1TS	POPTR_0019s11290	POPTR_0019s11290 (11)	scaffold_19:12630729-12632253(-) (11)	NA	Q38869	Calcium-dependent protein kinase 4	AT4G09570.1	calcium-dependent protein kinase 4 	LOC_Os11g07040.1	"CAMK_CAMK_like.43 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g151880.1	Protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212381.1.S1_at	A	A1MS	POPTR_0019s11330	POPTR_0019s11330 (10)	scaffold_19:12651916-12652348(-) (10)	NA	Q9FWX2	NAC domain-containing protein 7	AT1G71930.1	vascular related NAC-domain protein 7 	LOC_Os03g03540.1	"no apical meristem protein, putative, expressed"	Medtr5g021640.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.212382.1.S1_at	A	A1TS	POPTR_0019s11340	POPTR_0019s11340 (11)	scaffold_19:12664052-12664139(-) (11)	NA	Q4V893	Uncharacterized protein KIAA1704 homolog	AT1G65280.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g33800.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g104870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.212383.1.S1_at	A	A1TS	POPTR_0019s11370	POPTR_0019s11370 (11)	scaffold_19:12688227-12688685(-) (11)	NA	NA	NA	AT4G09620.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g62240.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212384.1.S1_at	A	A1TA	POPTR_0019s11390	POPTR_0019s11390 (11)	scaffold_19:12699975-12700015(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212384.1.S1_s_at	A	A2TS	POPTR_0013s11800	POPTR_0019s11380 (11)//POPTR_0013s11800 (11)	scaffold_13:12449566-12450822(+) (11)//scaffold_19:12698539-12699637(+) (11)	NA	NA	NA	AT1G34550.1	Protein of unknown function (DUF616) 	LOC_Os11g09170.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	AC146568_8.1	Protein of unknown function DUF616 AC146568.11 42302-43568 E EGN_Mt090430 200	NA	GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.212386.1.S1_at	A	A1TS	POPTR_0019s11410	POPTR_0019s11410 (11)	scaffold_19:12704138-12704419(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212387.1.S1_s_at	A	A1TS	POPTR_0019s11420	POPTR_0019s11420 (11)	scaffold_19:12710928-12711344(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212388.1.S1_at	A	A1TS	POPTR_0019s11440	POPTR_0019s11440 (11)	scaffold_19:12713727-12715422(-) (11)	NA	Q5R7Q3	Magnesium transporter NIPA2	AT1G71900.1	Protein of unknown function (DUF803) 	LOC_Os01g65986.1	"DUF803 domain containing, putative, expressed"	Medtr2g005850.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212389.1.S1_at	A	A1TS	POPTR_0019s11450	POPTR_0019s11450 (11)	scaffold_19:12720115-12720556(-) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT1G34420.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os12g08180.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g094070.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.212390.1.S1_at	A	A1TS	POPTR_0019s11480	POPTR_0019s11480 (11)	scaffold_19:12751934-12752805(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212391.1.S1_at	A	A1MS	POPTR_0019s11500	POPTR_0019s11500 (9)	scaffold_19:12760255-12761571(+) (9)	NA	O78458	Uncharacterized protein ycf37	AT1G22700.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g32300.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212392.1.S1_at	A	A1TS	POPTR_0019s11550	POPTR_0019s11550 (11)	scaffold_19:12820172-12822627(-) (11)	NA	NA	NA	AT1G34340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g35730.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g122290.1	"AB-hydrolase YheT, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212393.1.S1_at	A	A1TS	POPTR_0019s11570	POPTR_0019s11570 (11)	scaffold_19:12842774-12843927(-) (11)	NA	NA	NA	AT1G34320.1	Protein of unknown function (DUF668) 	LOC_Os01g65330.1	expressed protein	Medtr4g144270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212393.1.S1_s_at	A	A2TS	POPTR_0013s11960	POPTR_0019s11570 (11)//POPTR_0013s11960 (11)	scaffold_13:12610475-12611536(-) (11)//scaffold_19:12842867-12843950(-) (11)	NA	NA	NA	AT1G34320.1	Protein of unknown function (DUF668) 	LOC_Os01g65330.1	expressed protein	Medtr4g144270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212394.1.S1_at	A	A1TS	POPTR_0019s11570	POPTR_0019s11570 (11)	scaffold_19:12850557-12850870(-) (11)	NA	NA	NA	AT1G34320.1	Protein of unknown function (DUF668) 	LOC_Os01g65330.1	expressed protein	Medtr4g144270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212396.1.S1_at	A	A1TS	POPTR_0019s11600	POPTR_0019s11600 (11)	scaffold_19:12864804-12866126(-) (11)	NA	A4IIS8	Multidrug and toxin extrusion protein 1	AT1G71870.1	MATE efflux family protein 	LOC_Os03g62270.1	"MATE efflux family protein, putative, expressed"	Medtr5g010990.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.212397.1.S1_at	A	A1TS	POPTR_0019s11640	POPTR_0019s11640 (11)	scaffold_19:12899536-12900039(-) (11)	NA	NA	NA	AT5G54990.1	RING/U-box superfamily protein 	LOC_Os11g05200.1	"zinc finger, C3HC4 type domain containing protein"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212399.1.S1_at	A	A1TS	POPTR_0019s11680	POPTR_0019s11680 (11)	scaffold_19:12921257-12921458(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g65992.1	expressed protein	Medtr2g018110.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212401.1.S1_at	A	A1TS	POPTR_0019s11720	POPTR_0019s11720 (11)	scaffold_19:12958972-12959380(+) (11)	NA	P32980	"ATP synthase delta chain, chloroplastic"	AT4G09650.1	ATP synthase delta-subunit gene 	LOC_Os02g51470.3	"ATP synthase F1, delta subunit family protein, putative, expressed"	Medtr8g109030.1	"H+-transporting two-sector ATPase, delta (OSCP) subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)""||GO:0005886|plasma membrane"
PtpAffx.212402.1.S1_at	A	A1TS	POPTR_0019s11730	POPTR_0019s11730 (11)	scaffold_19:12963278-12963967(+) (11)	NA	Q54I39	IST1-like protein	AT1G34220.2	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os01g49350.1	"DUF292 domain containing protein, expressed"	Medtr8g088790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212403.1.S1_s_at	A	A1TS	POPTR_0019s11740	POPTR_0019s11740 (11)	scaffold_19:12966487-12966987(-) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT1G71830.1	somatic embryogenesis receptor-like kinase 1 	LOC_Os08g07760.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g008520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.212404.1.S1_at	A	A1TS	POPTR_0019s11770	POPTR_0019s11770 (11)	scaffold_19:12994230-12994773(+) (11)	POPTR_0001s07390 (6)	Q9FF80	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1"	AT5G04940.2	SU(VAR)3-9 homolog 1 	LOC_Os05g41172.2	"histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed"	Medtr7g105180.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212405.1.S1_at	A	A1TS	POPTR_0019s11780	POPTR_0019s11780 (11)	scaffold_19:12995448-12995948(-) (11)	NA	Q3E703	Ethylene-responsive transcription factor ERF088	AT1G12890.1	Integrase-type DNA-binding superfamily protein 	LOC_Os08g07700.1	"AP2 domain containing protein, expressed"	Medtr8g139310.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.212408.1.S1_at	A	A1TS	POPTR_0019s11880	POPTR_0019s11880 (11)	scaffold_19:13105337-13106938(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212409.1.S1_at	A	A1TS	POPTR_0019s11890	POPTR_0019s11890 (11)	scaffold_19:13118216-13118859(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212410.1.S1_at	A	A1TS	POPTR_0019s11900	POPTR_0019s11900 (11)	scaffold_19:13122565-13122803(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212411.1.S1_at	A	A1TS	POPTR_0019s11910	POPTR_0019s11910 (11)	scaffold_19:13130775-13132319(-) (11)	NA	Q05758	"Ketol-acid reductoisomerase, chloroplastic"	AT3G58610.3	ketol-acid reductoisomerase 	LOC_Os05g49800.1	"ketol-acid reductoisomerase, chloroplast precursor, putative, expressed"	Medtr4g109610.1	Acetohydroxy acid isomeroreductase; ; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0055114|oxidation reduction	GO:0004455|ketol-acid reductoisomerase activity	NA
PtpAffx.212412.1.S1_at	A	A1MS	POPTR_0019s11930	POPTR_0019s11930 (9)	scaffold_19:13137907-13138423(-) (11)	NA	Q9MAH4	ABC transporter G family member 10	AT1G53270.1	ABC-2 type transporter family protein 	LOC_Os01g42900.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr1g126360.1	AAA ATPase 	NA	NA	GO:0016020|membrane
PtpAffx.212413.1.S1_at	A	A1TS	POPTR_0019s11960	POPTR_0019s11960 (11)	scaffold_19:13156522-13158769(+) (11)	NA	NA	NA	AT2G31130.1	unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). 	NA	NA	Medtr4g109560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212414.1.S1_at	A	A1TS	POPTR_0019s11970	POPTR_0019s11970 (11)	scaffold_19:13159589-13160261(-) (11)	NA	NA	NA	AT5G06700.1	Plant protein of unknown function (DUF828) 	LOC_Os01g42810.1	"leaf senescence related protein, putative, expressed"	Medtr7g112170.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212415.1.S1_at	A	A1TS	POPTR_0019s12030	POPTR_0019s12030 (11)	scaffold_19:13190613-13191184(-) (11)	NA	P43935	Uncharacterized protein HI_0077	AT1G06240.1	Protein of unknown function DUF455 	LOC_Os01g11590.2	"uncharacterized protein HI0077, putative, expressed"	Medtr3g124330.1	Protein of unknown function DUF455 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212416.1.S1_at	A	A1TS	POPTR_0019s12060	POPTR_0019s12060 (11)	scaffold_19:13204725-13204849(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212416.1.S1_x_at	A	A1TS	POPTR_0019s12060	POPTR_0019s12060 (11)	scaffold_19:13204725-13204970(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212417.1.S1_at	A	A1TS	POPTR_0019s12080	POPTR_0019s12080 (11)	scaffold_19:13229349-13229855(-) (11)	NA	Q0WN01	Pentatricopeptide repeat-containing protein At3g58590	AT3G58590.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g55070.1	"pentatricopeptide, putative, expressed"	Medtr7g037660.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212418.1.S1_at	A	A1TS	POPTR_0019s12090	POPTR_0019s12090 (11)	scaffold_19:13233430-13233644(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212419.1.S1_at	A	A1TS	POPTR_0019s12120	POPTR_0019s12120 (11)	scaffold_19:13261248-13261470(+) (11)	NA	Q9SLC3	E3 ubiquitin-protein ligase ATL41	AT2G42360.1	RING/U-box superfamily protein 	LOC_Os01g55110.1	"RING-H2 finger protein, putative, expressed"	Medtr2g132500.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212420.1.S1_s_at	A	A1TS	POPTR_0019s12150	POPTR_0019s12150 (11)	scaffold_19:13281142-13281613(+) (11)	NA	NA	NA	AT3G58110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1); Has 2534 Blast hits to 1905 proteins in 233 species: Archae - 11; Bacteria - 102; Metazoa - 890; Fungi - 241; Plants - 124; Viruses - 59; Other Eukaryotes - 1107 (source: NCBI BLink). 	LOC_Os06g34710.1	expressed protein	AC233675_21.1	hypothetical protein AC233675.1 101243-98727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212421.1.S1_at	A	A1MS	POPTR_0019s12160	POPTR_0019s12160 (11)	scaffold_19:13290550-13291223(+) (11)	NA	Q9LFN5	Glutamate receptor 2.5	AT2G24710.1	glutamate receptor 2.3 	LOC_Os06g06130.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.212422.1.S1_x_at	A	A1TS	POPTR_0019s12190	POPTR_0019s12190 (11)	scaffold_19:13310144-13311385(-) (11)	NA	P14314	Glucosidase 2 subunit beta	AT2G42390.1	"protein kinase C substrate, heavy chain-related "	LOC_Os01g16970.1	"glucosidase II beta subunit-like domain containing protein, expressed"	AC233675_14.1	"Glucosidase 2 subunit beta precursor, related AC233675.1 72073-74269 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212423.1.S1_at	A	A1TS	POPTR_0019s12200	POPTR_0019s12200 (11)	scaffold_19:13315932-13316578(-) (11)	NA	Q9LNB9	LOB domain-containing protein 2	AT1G06280.1	LOB domain-containing protein 2 	LOC_Os12g01550.1	"DUF260 domain containing protein, putative, expressed"	AC233675_12.1	Protein of unknown function DUF260 AC233675.1 64659-68186 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212424.1.S1_at	A	A1MS	POPTR_0019s12250	POPTR_0019s12250 (11)	scaffold_19:13343939-13344497(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G54060.1	UDP-glucose:flavonoid 3-o-glucosyltransferase 	LOC_Os11g27370.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g109040.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212425.1.S1_at	A	A1TS	POPTR_0019s12260	POPTR_0019s12260 (11)	scaffold_19:13345450-13346286(-) (11)	NA	NA	NA	AT1G28520.2	vascular plant one zinc finger protein 	LOC_Os01g54930.1	"one zinc finger protein, putative, expressed"	Medtr4g109030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212426.1.S1_at	A	A1TS	POPTR_0019s12270	POPTR_0019s12270 (11)	scaffold_19:13352064-13352424(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212427.1.S1_at	A	A1TS	POPTR_0019s12860	POPTR_0019s12860 (11)	scaffold_19:13869392-13870335(+) (11)	NA	Q9FZB8	Probable LRR receptor-like serine/threonine-protein kinase At1g51810	AT4G29990.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44930.1	"receptor-like protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.212428.1.S1_at	A	A1TS	POPTR_0144s00210	POPTR_0144s00210 (11)	scaffold_144:17270-18746(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212429.1.S1_at	A	A1TS	POPTR_0019s12470	POPTR_0019s12470 (11)	scaffold_19:13518489-13519565(+) (11)	NA	B3GS44	GPI-anchored protein LORELEI	AT5G56170.1	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 	LOC_Os02g48980.1	"GPI-anchored protein, putative, expressed"	Medtr3g016820.1	"GPI-anchored protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212430.1.S1_at	A	A1TS	POPTR_0019s12500	POPTR_0019s12500 (10)	scaffold_19:13546824-13549818(+) (11)	NA	NA	NA	AT5G62460.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g66970.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g044040.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212431.1.S1_at	A	A2TS	POPTR_0019s12510	POPTR_0019s12510 (11)//POPTR_0019s12520 (10)	scaffold_19:13552482-13553681(-) (11)//scaffold_19:13560097-13561296(-) (10)	NA	NA	NA	AT5G60030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr1g020400.1	"AGAP002737-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212432.1.S1_at	A	A1TS	POPTR_0491s00210	POPTR_0491s00210 (9)	scaffold_491:13807-14880(-) (9)	NA	NA	NA	AT3G59670.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37440.2); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	NA	NA	Medtr4g128490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212433.1.S1_at	A	A1TS	POPTR_0019s12540	POPTR_0019s12540 (11)	scaffold_19:13580151-13580306(-) (11)	NA	A8YXY3	15 kDa selenoprotein	AT1G05720.1	selenoprotein family protein 	LOC_Os01g66960.1	"selenoprotein precursor, putative, expressed"	Medtr4g128540.1	"15 kDa selenoprotein precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212434.1.S1_at	A	A1TS	POPTR_0019s12560	POPTR_0019s12560 (11)	scaffold_19:13606597-13606775(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212436.1.S1_x_at	A	A2TS	POPTR_0019s12590	POPTR_1292s00200 (10)//POPTR_0019s12590 (10)	scaffold_1292:3201-3390(+) (10)//scaffold_19:13624313-13624502(-) (10)	NA	NA	NA	AT3G59770.2	sacI homology domain-containing protein / WW domain-containing protein 	NA	NA	Medtr4g128320.1	"WW/Rsp5/WWP; Synaptojanin, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.212437.1.S1_at	A	A1TS	POPTR_0019s12600	POPTR_0019s12600 (11)	scaffold_19:13626892-13629254(+) (11)	NA	NA	NA	AT3G59780.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g67120.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g105210.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212437.1.S1_s_at	A	A3TS	POPTR_0019s12600	POPTR_0019s12790 (11)//POPTR_0019s12600 (11)//POPTR_0019s12940 (11)	scaffold_19:13627247-13628093(+) (11)//scaffold_19:13743285-13744125(-) (11)//scaffold_19:13979581-13980421(-) (11)	NA	NA	NA	AT3G59780.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g67120.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g105210.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212438.1.S1_s_at	A	A3TS	POPTR_0013s12270	POPTR_0019s12650 (11)//POPTR_2085s00200 (11)//POPTR_0013s12270 (11)	scaffold_13:12868278-12868312(-) (11)//scaffold_19:13636300-13636334(+) (11)//scaffold_19:13644016-13644050(+) (11)//scaffold_19:13652008-13652042(+) (11)//scaffold_2085:1769-1803(-) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr2g030170.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212440.1.S1_s_at	A	A1TS	POPTR_0019s12680	POPTR_0019s12680 (11)	scaffold_19:13657584-13658151(-) (11)	NA	Q96DI7	U5 small nuclear ribonucleoprotein 40 kDa protein	AT2G43770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g44370.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g103120.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212441.1.S1_at	A	A1TS	POPTR_0019s12690	POPTR_0019s12690 (11)	scaffold_19:13667447-13668950(+) (11)	NA	Q5H8A6	Ion channel CASTOR	AT5G49960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g62650.1	"ion channel DMI1-like, chloroplast precursor, putative, expressed"	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212442.1.S1_at	A	A3TS	POPTR_0019s12580	POPTR_0019s12580 (11)//POPTR_0019s12820 (11)//POPTR_0019s12870 (11)	scaffold_19:13622358-13622451(-) (11)//scaffold_19:13668767-13668860(+) (11)//scaffold_19:13755371-13755464(+) (11)//scaffold_19:13940883-13940976(+) (11)	NA	Q5H8A6	Ion channel CASTOR	AT5G49960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g62650.1	"ion channel DMI1-like, chloroplast precursor, putative, expressed"	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212443.1.S1_at	A	A1TS	POPTR_0019s12880	POPTR_0019s12880 (11)	scaffold_19:13940001-13944312(+) (11)	NA	NA	NA	AT4G34620.1	small subunit ribosomal protein 16 	LOC_Os08g40610.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.212443.1.S1_x_at	A	A1TS	POPTR_0019s12880	POPTR_0019s12880 (11)	scaffold_19:13940001-13944347(+) (11)	NA	NA	NA	AT4G34620.1	small subunit ribosomal protein 16 	LOC_Os08g40610.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.212444.1.S1_s_at	A	A1TS	POPTR_0019s12900	POPTR_0019s12900 (11)	scaffold_19:13680293-13680414(+) (11)//scaffold_19:13947655-13947776(+) (11)	NA	C0QKU4	30S ribosomal protein S16	AT4G34620.1	small subunit ribosomal protein 16 	LOC_Os08g40610.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.212447.1.S1_at	A	A1TS	POPTR_0019s12930	POPTR_0019s12930 (11)	scaffold_19:13973474-13973896(+) (11)	NA	Q40392	TMV resistance protein N	AT4G11170.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os08g05800.1	"retrotransposon protein, putative, unclassified"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.212448.1.S1_at	A	A1TS	POPTR_0019s15430	POPTR_0019s15430 (11)	scaffold_19:15995730-15996080(+) (11)	NA	Q9SZH0	V-type proton ATPase subunit G3	AT4G25950.1	vacuolar ATP synthase G3 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
PtpAffx.212449.1.S1_at	A	A1TS	POPTR_0019s15420	POPTR_0019s15420 (11)	scaffold_19:15974473-15974785(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g42630.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr3g059210.1	Ribonuclease H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212450.1.S1_at	A	A1TS	POPTR_0019s15410	POPTR_0019s15410 (9)	scaffold_19:15953776-15955874(+) (11)	NA	Q9FPR6	Two-component response regulator ARR17	AT3G56380.1	response regulator 17 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g124910.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.212451.1.S1_at	A	A1TS	POPTR_0019s15390	POPTR_0019s15390 (11)	scaffold_19:15902341-15902458(-) (11)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT1G09575.1	Protein of unknown function (DUF607) 	LOC_Os12g02880.1	"E2F-related protein, putative, expressed"	Medtr5g083910.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212452.1.S1_at	A	A1TS	POPTR_0019s15380	POPTR_0019s15380 (11)	scaffold_19:15895345-15895765(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212453.1.S1_at	A	A1TS	POPTR_0019s15360	POPTR_0019s15360 (11)	scaffold_19:15887794-15888498(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212454.1.S1_at	A	A1MS	POPTR_0019s15325	POPTR_0019s15325 (11)	scaffold_19:15856399-15856948(-) (11)	NA	O42904	Pre-mRNA-processing factor 31	AT1G60170.1	pre-mRNA processing ribonucleoprotein binding region-containing protein 	LOC_Os04g46890.3	"pre-mRNA-processing factor 31, putative, expressed"	Medtr7g037700.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212455.1.S1_at	A	A1TS	POPTR_0019s15310	POPTR_0019s15310 (11)	scaffold_19:15852617-15853205(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212456.1.S1_at	A	A1TS	POPTR_0019s15290	POPTR_0019s15290 (11)	scaffold_19:15826828-15829028(-) (11)	NA	NA	NA	AT2G30530.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 5513 Blast hits to 872 proteins in 154 species: Archae - 0; Bacteria - 30; Metazoa - 615; Fungi - 144; Plants - 149; Viruses - 12; Other Eukaryotes - 4563 (source: NCBI BLink). 	LOC_Os05g25070.1	expressed protein	Medtr3g083960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212457.1.S1_at	A	A1TS	POPTR_0019s15280	POPTR_0019s15280 (10)	scaffold_19:15822112-15823512(+) (10)	NA	Q96EX2	RING finger and transmembrane domain-containing protein 2	AT5G01960.1	RING/U-box superfamily protein 	LOC_Os01g07390.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr7g080680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212458.1.S1_at	A	A1TS	POPTR_0019s15240	POPTR_0019s15240 (11)	scaffold_19:15804278-15805141(+) (11)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT1G06840.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr3g083770.1	Protein kinase; Adipokinetic hormone 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.212459.1.S1_at	A	A1TS	POPTR_0019s15230	POPTR_0019s15230 (11)	scaffold_19:15788213-15789080(-) (11)	NA	NA	NA	AT1G17455.2	ELF4-like 4 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr8g024260.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212460.1.S1_at	A	A1TS	POPTR_0019s15160	POPTR_0019s15160 (11)	scaffold_19:15732557-15732887(-) (11)	NA	NA	NA	AT2G30500.2	Kinase interacting (KIP1-like) family protein 	LOC_Os01g07370.2	"KIP1, putative, expressed"	Medtr5g083340.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212462.1.S1_at	A	A1TS	POPTR_0019s15120	POPTR_0019s15120 (11)	scaffold_19:15719777-15720194(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212463.1.S1_at	A	A1TS	POPTR_0019s15080	POPTR_0019s15080 (11)	scaffold_19:15689431-15689847(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212464.1.S1_at	A	A1MS	POPTR_0019s15070	POPTR_0019s15070 (11)	scaffold_19:15678550-15679107(-) (11)	NA	Q5CCK4	B3 domain-containing transcription repressor VAL2	AT4G32010.1	HSI2-like 1 	LOC_Os07g48200.1	"B3 DNA binding domain containing protein, putative, expressed"	Medtr4g036540.1	"Transcriptional factor B3; Zinc finger, CW-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.212465.1.S1_at	A	A1TS	POPTR_0019s15060	POPTR_0019s15060 (11)	scaffold_19:15674757-15675868(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g74620.1	conserved hypothetical protein	Medtr5g083220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212466.1.S1_at	A	A1TS	POPTR_0019s15030	POPTR_0019s15030 (11)	scaffold_19:15655588-15656733(-) (11)	NA	Q60848	Lymphocyte-specific helicase	AT5G66750.1	chromatin remodeling 1 	LOC_Os09g27060.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g019900.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.212467.1.S1_x_at	A	A2TS	POPTR_0019s15020	POPTR_0019s15020 (11)//POPTR_0003s09510 (10)	scaffold_19:15649459-15650256(+) (11)//scaffold_3:10802445-10803029(+) (10)	NA	NA	NA	AT1G44790.1	ChaC-like family protein 	NA	NA	Medtr1g037330.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212469.1.S1_at	A	A1TS	POPTR_0019s14990	POPTR_0019s14990 (11)	scaffold_19:15612790-15613333(-) (11)	POPTR_0019s15000 (8)	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.212470.1.S1_at	A	A1TS	POPTR_0019s14970	POPTR_0019s14970 (11)	scaffold_19:15601354-15601498(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212471.1.S1_at	A	A1TS	POPTR_0019s14930	POPTR_0019s14930 (11)	scaffold_19:15569978-15571457(-) (11)	NA	NA	NA	AT3G51620.2	PAP/OAS1 substrate-binding domain superfamily 	LOC_Os12g02260.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.212472.1.S1_at	A	A1TS	POPTR_0019s14920	POPTR_0019s14920 (10)	scaffold_19:15567872-15568119(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212473.1.S1_at	A	A1TS	POPTR_0019s14890	POPTR_0019s14890 (9)	scaffold_19:15538658-15538900(-) (10)	NA	NA	NA	AT2G30395.1	ovate family protein 17 	LOC_Os07g48140.1	"ATOFP17/OFP17, putative"	Medtr5g083020.1	"ATOFP17/OFP17, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212475.1.S1_at	A	A1TS	POPTR_0019s14870	POPTR_0019s14870 (11)	scaffold_19:15523203-15523366(-) (11)	NA	Q1PEY6	EPIDERMAL PATTERNING FACTOR-like protein 6	AT2G30370.2	allergen-related 	LOC_Os01g60900.1	expressed protein	Medtr5g082990.1	"allergen-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212476.1.S1_at	A	A1TS	POPTR_0019s14850	POPTR_0019s14850 (11)	scaffold_19:15503805-15505426(-) (11)	NA	Q5FPX9	Probable GTP-binding protein engB	AT5G58370.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g60180.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr3g132650.1	Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.212478.1.S1_at	A	A1TS	POPTR_0019s14830	POPTR_0019s14830 (10)	scaffold_19:15494889-15496758(-) (11)	NA	Q5PQP5	Structure-specific endonuclease subunit SLX1	AT2G30350.2	"Excinuclease ABC, C subunit, N-terminal "	LOC_Os07g12710.1	"GIY-YIG catalytic domain containing protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004518|nuclease activity	GO:0005622|intracellular
PtpAffx.212479.1.S1_at	A	A1TS	POPTR_0019s14810	POPTR_0019s14810 (10)	scaffold_19:15486084-15486424(+) (10)	NA	Q9C562	CBL-interacting serine/threonine-protein kinase 10	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g145620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212480.1.S1_at	A	A1TS	POPTR_0019s14800	POPTR_0019s14800 (11)	scaffold_19:15469456-15470160(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g091410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212481.1.S1_at	A	A1TS	POPTR_0019s14790	POPTR_0019s14790 (11)	scaffold_19:15461100-15461627(-) (11)	NA	Q8L5T5	LOB domain-containing protein 15	AT2G40470.1	LOB domain-containing protein 15 	LOC_Os01g60960.1	"DUF260 domain containing protein, putative, expressed"	Medtr3g145030.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212482.1.S1_s_at	A	A1TS	POPTR_0019s14740	POPTR_0019s14740 (11)	scaffold_19:15420942-15422168(+) (11)	NA	NA	NA	AT2G40435.1	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g27090.1	"basic helix-loop-helix domain containing protein, expressed"	Medtr5g091250.1	"transcription regulator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212483.1.S1_at	A	A1TS	POPTR_0019s14730	POPTR_0019s14730 (11)	scaffold_19:15406067-15406836(+) (11)	NA	NA	NA	AT2G30300.1	Major facilitator superfamily protein 	LOC_Os05g39800.1	"NFD4, putative, expressed"	Medtr5g026470.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212484.1.S1_at	A	A1TS	POPTR_0019s14720	POPTR_0019s14720 (11)	scaffold_19:15396612-15397449(-) (11)	NA	NA	NA	AT2G30280.1	RNA-directed DNA methylation 4 	LOC_Os11g01880.1	expressed protein	Medtr8g073710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212485.1.S1_s_at	A	A1TS	POPTR_0019s14700	POPTR_0019s14700 (11)	scaffold_19:15387553-15388053(-) (11)	NA	Q8LL69	3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase	AT2G25150.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g06180.1	"transferase family protein, putative, expressed"	Medtr4g073210.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.212486.1.S1_at	A	A1TS	POPTR_0019s14690	POPTR_0019s14690 (11)	scaffold_19:15384105-15385996(-) (11)	NA	Q8GWL2	Protein LURP-one-related 7	AT2G30270.1	Protein of unknown function (DUF567) 	LOC_Os05g27340.1	expressed protein	Medtr5g082550.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212487.1.S1_at	A	A1TS	POPTR_0019s14680	POPTR_0019s14680 (11)	scaffold_19:15381330-15381741(-) (11)	NA	Q6A009	RING finger protein 160	AT5G58410.1	HEAT/U-box domain-containing protein 	LOC_Os01g74610.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g082490.1	"Zinc finger, RING-type; Calcium-binding EF-hand; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212488.1.S1_at	A	A1TS	POPTR_0019s14680	POPTR_0019s14680 (11)	scaffold_19:15372553-15372604(-) (11)	NA	Q6A009	RING finger protein 160	AT5G58410.1	HEAT/U-box domain-containing protein 	LOC_Os01g74610.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g082490.1	"Zinc finger, RING-type; Calcium-binding EF-hand; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212488.1.S1_s_at	A	A1TS	POPTR_0019s14680	POPTR_0019s14680 (11)	scaffold_19:15372173-15372565(-) (11)	NA	Q6A009	RING finger protein 160	AT5G58410.1	HEAT/U-box domain-containing protein 	LOC_Os01g74610.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g082490.1	"Zinc finger, RING-type; Calcium-binding EF-hand; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212489.1.S1_at	A	A1TS	POPTR_0019s14670	POPTR_0019s14670 (11)	scaffold_19:15365957-15366200(-) (11)	NA	P20144	Wound-induced protein 1	AT3G10985.1	senescence associated gene 20 	LOC_Os05g27580.1	"wound-induced protein WI12, putative"	Medtr5g082480.1	Wound-induced WI12 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212491.1.S1_at	A	A1TS	POPTR_0019s14650	POPTR_0019s14650 (11)	scaffold_19:15356816-15357388(-) (11)	NA	P50160	Sex determination protein tasselseed-2	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g18740.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.212492.1.S1_at	A	A1TS	POPTR_0019s14640	POPTR_0019s14640 (11)	scaffold_19:15355006-15355404(+) (11)	NA	P22195	Cationic peroxidase 1	AT4G36430.1	Peroxidase superfamily protein 	LOC_Os01g10850.1	"peroxidase precursor, putative, expressed"	Medtr5g082780.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212493.1.S1_at	A	A1TS	POPTR_0019s14630	POPTR_0019s14630 (11)	scaffold_19:15352778-15353091(-) (11)	NA	Q38834	Disease resistance RPP13-like protein 4	AT3G50950.1	HOPZ-ACTIVATED RESISTANCE 1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212494.1.S1_at	A	A1TS	POPTR_0019s14610	POPTR_0019s14610 (11)	scaffold_19:15344893-15345443(+) (11)	NA	Q9FL53	Fasciclin-like arabinogalactan protein 21	AT5G06920.1	FASCICLIN-like arabinogalactan protein 21 precursor 	NA	NA	Medtr2g103270.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212495.1.S1_at	A	A1TS	POPTR_0019s14580	POPTR_0019s14580 (11)	scaffold_19:15319647-15320838(-) (11)	NA	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212495.1.S1_x_at	A	A1TS	POPTR_0019s14580	POPTR_0019s14580 (11)	scaffold_19:15319652-15320838(-) (11)	NA	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212496.1.S1_at	A	A1TS	POPTR_0019s14560	POPTR_0019s14560 (11)	scaffold_19:15314499-15314590(-) (11)	NA	Q42064	60S ribosomal protein L8-3	AT4G36130.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr7g084800.1	Elongation factor P-like protein YeiP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212496.1.S1_s_at	A	A1TS	POPTR_0019s14560	POPTR_0019s14560 (11)	scaffold_19:15314244-15314470(-) (11)	NA	Q42064	60S ribosomal protein L8-3	AT4G36130.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr7g084800.1	Elongation factor P-like protein YeiP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212497.1.S1_at	A	A1TS	POPTR_0019s14480	POPTR_0019s14480 (11)	scaffold_19:15260247-15260676(+) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr5g082360.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.212498.1.S1_at	A	A1TS	POPTR_0019s14470	POPTR_0019s14470 (11)	scaffold_19:15251884-15252396(+) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr3g033740.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.212499.1.S1_at	A	A1MS	POPTR_0019s14465	POPTR_0019s14465 (9)	scaffold_19:15247396-15247920(+) (11)	NA	NA	NA	AT5G01710.1	methyltransferases 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212500.1.S1_at	A	A1TS	POPTR_0019s14450	POPTR_0019s14450 (11)	scaffold_19:15228893-15229449(+) (11)	NA	Q8RWU5	F-box/LRR-repeat protein 3	AT5G01720.1	RNI-like superfamily protein 	LOC_Os11g01780.1	"F-box/LRR-repeat protein 3, putative, expressed"	Medtr7g138390.1	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.212501.1.S1_at	A	A1TA	POPTR_0019s14261	POPTR_0019s14261 (9)	scaffold_19:15005860-15006079(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212503.1.S1_at	A	A1TS	POPTR_0019s14160	POPTR_0019s14160 (11)	scaffold_19:14920750-14922129(+) (11)	NA	NA	NA	AT2G01260.1	Protein of unknown function (DUF789) 	LOC_Os04g57870.1	expressed protein	Medtr6g089670.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212504.1.S1_at	A	A1TS	POPTR_0019s14150	POPTR_0019s14150 (11)	scaffold_19:14914503-14915284(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212505.1.S1_at	A	A1TS	POPTR_0019s14130	POPTR_0019s14130 (11)	scaffold_19:14884935-14885614(-) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT5G16770.2	myb domain protein 9 	LOC_Os10g33810.1	"myb-related protein Myb4, putative, expressed"	Medtr2g103070.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212506.1.S1_at	A	A1TS	POPTR_0019s14110	POPTR_0019s14110 (11)	scaffold_19:14870870-14871745(+) (11)	NA	Q9ZR04	Putative cyclin-D6-1	AT4G03270.1	Cyclin D6;1 	LOC_Os07g37010.1	"cyclin, putative, expressed"	Medtr2g103030.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212508.1.S1_at	A	A1TS	POPTR_0019s14090	POPTR_0019s14090 (11)	scaffold_19:14846067-14846902(-) (11)	NA	A1L272	Equilibrative nucleoside transporter 4	AT4G05120.1	Major facilitator superfamily protein 	LOC_Os07g37100.2	"nucleoside transporter, putative, expressed"	Medtr2g103000.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
PtpAffx.212510.1.S1_s_at	A	A1TS	POPTR_0019s14060	POPTR_0019s14060 (11)	scaffold_19:14817492-14821872(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT1G03940.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g57480.1	"transferase family protein, putative, expressed"	Medtr2g102840.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.212512.1.S1_s_at	A	A1TS	POPTR_0019s13850	POPTR_0019s13850 (11)	scaffold_19:14707820-14708331(-) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03450.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr4g079350.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212513.1.S1_at	A	A1TS	POPTR_0019s13850	POPTR_0019s13850 (11)	scaffold_19:14706524-14706878(-) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03450.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr4g079350.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212514.1.S1_s_at	A	A3TS	POPTR_0019s13740	POPTR_0019s13740 (11)//POPTR_0063s00270 (11)//POPTR_0019s13840 (11)	scaffold_19:14601640-14602212(-) (11)//scaffold_19:14687030-14687599(-) (11)//scaffold_63:71569-72141(-) (11)	NA	NA	NA	AT1G06330.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g55320.1	heavy metal-associated domain containing protein	Medtr3g101130.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.212516.1.S1_at	A	A1TS	POPTR_0015s00240	POPTR_0015s00240 (11)	scaffold_15:108745-109119(-) (11)	NA	NA	NA	AT4G27870.1	Vacuolar iron transporter (VIT) family protein 	LOC_Os06g01440.1	"integral membrane protein, putative, expressed"	Medtr5g077300.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212517.1.S1_at	A	A1TS	POPTR_0015s00250	POPTR_0015s00250 (11)	scaffold_15:123898-124405(+) (11)	NA	Q9LJX0	ABC transporter B family member 19	AT3G28860.1	ATP binding cassette subfamily B19 	LOC_Os08g05690.1	"ABC transporter, ATP-binding protein, putative"	Medtr3g121950.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.212518.1.S1_at	A	A1TS	POPTR_0015s00260	POPTR_0015s00260 (11)	scaffold_15:124590-126592(-) (11)	NA	NA	NA	AT5G24680.1	"Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 "	LOC_Os02g01710.4	"peptidase family C78 domain containing protein, expressed"	Medtr5g077410.1	Protein of unknown function DUF1671 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212519.1.S1_at	A	A1TS	POPTR_0015s00300	POPTR_0015s00300 (10)	scaffold_15:144617-146611(+) (10)	NA	Q9FLU1	DNA-binding protein BIN4	AT5G24630.5	double-stranded DNA binding 	LOC_Os02g05440.1	expressed protein	Medtr3g122060.1	"BIN4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212524.1.S1_s_at	A	A1TS	POPTR_0015s00400	POPTR_0015s00400 (11)	scaffold_15:229125-229638(-) (11)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212525.1.S1_at	A	A1TS	POPTR_0015s00410	POPTR_0015s00410 (9)	scaffold_15:230997-231148(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g03870.1	"OsFBX353 - F-box domain containing protein, expressed"	Medtr8g018890.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212527.1.S1_at	A	A1TS	POPTR_0015s00450	POPTR_0015s00450 (11)	scaffold_15:251993-252589(+) (11)	NA	NA	NA	AT5G53730.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os12g06260.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr3g122630.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.212528.1.S1_s_at	A	A1TS	POPTR_0015s00460	POPTR_0015s00460 (11)	scaffold_15:255678-256154(-) (11)	NA	NA	NA	AT5G24460.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os06g49780.1	expressed protein	Medtr3g122610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212531.1.S1_at	A	A1TS	POPTR_0015s00520	POPTR_0015s00520 (11)	scaffold_15:309476-310042(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT1G71930.1	vascular related NAC-domain protein 7 	LOC_Os09g32040.1	"no apical meristem protein, putative, expressed"	Medtr7g143100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.212532.1.S1_at	A	A1TS	POPTR_0015s00530	POPTR_0015s00530 (10)	scaffold_15:335047-339581(+) (10)	NA	Q9NW08	DNA-directed RNA polymerase III subunit RPC2	AT5G45140.1	nuclear RNA polymerase C2 	LOC_Os03g28960.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr1g028340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.212533.1.S1_at	A	A1TS	POPTR_0015s00600	POPTR_0015s00600 (11)	scaffold_15:359967-360337(-) (11)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212534.1.S1_at	A	A1TS	POPTR_0015s00610	POPTR_0015s00610 (11)	scaffold_15:367825-368924(-) (11)	NA	NA	NA	AT4G27590.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g49260.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g077820.1	"copper-binding protein-related, putative "	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.212535.1.S1_at	A	A1TS	POPTR_0015s00620	POPTR_0015s00620 (11)	scaffold_15:373614-374796(-) (11)	NA	NA	NA	AT5G24580.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g64340.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g122410.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.212536.1.S1_at	A	A1TS	POPTR_0015s00650	POPTR_0015s00650 (11)	scaffold_15:386810-387923(-) (11)	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT5G54130.2	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr3g122310.1	Endonuclease/exonuclease/phosphatase; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212537.1.S1_at	A	A1TS	POPTR_0015s00660	POPTR_0015s00660 (11)	scaffold_15:394134-394390(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212538.1.S1_at	A	A1TS	POPTR_0015s00680	POPTR_0015s00680 (11)	scaffold_15:402785-403364(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G55830.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g17490.1	expressed protein	Medtr5g077440.1	Protein kinase; Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.212539.1.S1_at	A	A1TS	POPTR_0015s00720	POPTR_0015s00720 (10)	scaffold_15:422427-422818(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr3g122790.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212540.1.S1_at	A	A1MS	POPTR_0015s00740	POPTR_0015s00740 (10)	scaffold_15:430070-430702(+) (10)	NA	NA	NA	AT5G24500.1	unknown protein; Has 133 Blast hits to 129 proteins in 40 species: Archae - 2; Bacteria - 0; Metazoa - 60; Fungi - 5; Plants - 29; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). 	NA	NA	Medtr3g122760.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212541.1.S1_at	A	A1TS	POPTR_0015s00760	POPTR_0015s00760 (11)	scaffold_15:440606-440665(+) (11)	NA	NA	NA	AT3G49400.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g50690.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g105710.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212541.1.S1_x_at	A	A1TS	POPTR_0015s00760	POPTR_0015s00760 (11)	scaffold_15:440420-440660(+) (11)	NA	NA	NA	AT3G49400.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g50690.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g105710.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212542.1.S1_at	A	A1MS	POPTR_0015s00790	POPTR_0015s00790 (9)	scaffold_15:454687-455061(-) (11)	NA	Q5ZJX4	RNA-binding protein 38	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122940.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.212543.1.S1_at	A	A1TS	POPTR_0015s00820	POPTR_0015s00820 (11)	scaffold_15:467171-467985(-) (11)	NA	P30222	"Small heat shock protein, chloroplastic"	AT4G27670.1	heat shock protein 21 	LOC_Os03g14180.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr3g122960.2	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212544.1.S1_at	A	A1MS	POPTR_0015s00830	POPTR_0015s00830 (11)	scaffold_15:473271-473330(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G00820.1	IQ-domain 17 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr1g122110.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212544.1.S1_s_at	A	A1TS	POPTR_0015s00830	POPTR_0015s00830 (11)	scaffold_15:472665-473068(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G00820.1	IQ-domain 17 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr1g122110.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212545.1.S1_at	A	A1TS	POPTR_0015s00840	POPTR_0015s00840 (11)	scaffold_15:490224-491181(+) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.212546.1.S1_at	A	A1TS	POPTR_0015s00870	POPTR_0015s00870 (9)	scaffold_15:507063-508408(-) (10)	NA	Q9FGR0	Cleavage and polyadenylation specificity factor subunit 1	AT5G51660.1	cleavage and polyadenylation specificity factor 160 	LOC_Os04g18010.1	"cleavage and polyadenylation specificity factor subunit 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212547.1.S1_x_at	A	A1MS	POPTR_0015s00870	POPTR_0015s00870 (9)	scaffold_15:508849-509008(-) (11)	NA	Q9FGR0	Cleavage and polyadenylation specificity factor subunit 1	AT5G51660.1	cleavage and polyadenylation specificity factor 160 	LOC_Os04g18010.1	"cleavage and polyadenylation specificity factor subunit 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212548.1.S1_at	A	A1TS	POPTR_0015s00910	POPTR_0015s00910 (11)	scaffold_15:518190-518827(-) (11)	NA	NA	NA	AT5G53620.3	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). 	LOC_Os08g43060.3	expressed protein	Medtr3g123170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212549.1.S1_at	A	A1TS	POPTR_0015s00930	POPTR_0015s00930 (11)	scaffold_15:547438-548546(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT5G53580.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g37330.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.212552.1.S1_at	A	A1TS	POPTR_0015s01030	POPTR_0015s01030 (11)	scaffold_15:598130-599446(+) (11)	NA	Q9JK81	"UPF0160 protein MYG1, mitochondrial"	AT5G41970.1	Metal-dependent protein hydrolase 	LOC_Os02g46150.1	"GAMM1 protein-like, putative, expressed"	Medtr3g123380.1	Metal-dependent protein hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212553.1.S1_at	A	A1TS	POPTR_0015s01060	POPTR_0015s01060 (11)	scaffold_15:618924-619510(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g27370.1	expressed protein	Medtr2g008270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212554.1.S1_at	A	A1TS	POPTR_0015s01070	POPTR_0015s01070 (11)	scaffold_15:633214-633358(+) (11)	NA	Q9ZWC5	Scarecrow-like protein 18	AT1G55580.1	GRAS family transcription factor 	LOC_Os02g10360.1	"MONOCULM 1, putative"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212554.1.S1_x_at	A	A1TS	POPTR_0015s01070	POPTR_0015s01070 (11)	scaffold_15:632910-633423(+) (11)	NA	Q9ZWC5	Scarecrow-like protein 18	AT1G55580.1	GRAS family transcription factor 	LOC_Os02g10360.1	"MONOCULM 1, putative"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212555.1.S1_at	A	A1TS	POPTR_0015s01080	POPTR_0015s01080 (10)	scaffold_15:636996-637322(-) (10)	NA	Q69NG5	"Probable 6-phosphogluconolactonase 4, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212556.1.S1_at	A	A1TS	POPTR_0015s01090	POPTR_0015s01090 (11)	scaffold_15:638085-638582(-) (11)	NA	Q5TYW4	Neuroblastoma-amplified sequence	AT5G24350.1	CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g13150.1	expressed protein	Medtr3g123460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212557.1.S1_at	A	A1TS	POPTR_0015s01100	POPTR_0015s01100 (9)	scaffold_15:661456-662021(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212558.1.S1_at	A	A1TS	POPTR_0015s01110	POPTR_0015s01110 (11)	scaffold_15:680709-684372(+) (11)	NA	Q7YR39	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	AT1G32490.1	RNA helicase family protein 	LOC_Os08g24760.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.212560.1.S1_at	A	A1TS	POPTR_0015s01180	POPTR_0015s01180 (11)	scaffold_15:736463-737895(-) (11)	NA	Q8N9H8	Probable exonuclease mut-7 homolog	AT5G24340.1	3'-5' exonuclease domain-containing protein 	LOC_Os07g26930.2	expressed protein	Medtr1g008750.1	"Polynucleotidyl transferase, Ribonuclease H fold "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.212561.1.S1_at	A	A1TS	POPTR_0015s01190	POPTR_0015s01190 (11)	scaffold_15:746841-748498(+) (11)	NA	Q9FNE9	Histone-lysine N-methyltransferase ATXR6	AT5G24330.1	ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 	LOC_Os02g03030.1	"ATXR, putative"	Medtr1g008770.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212562.1.S1_at	A	A1TS	POPTR_0015s01200	POPTR_0015s01200 (11)	scaffold_15:764905-765299(+) (11)	NA	Q6LA54	Uncharacterized WD repeat-containing protein C3H5.08c	AT5G24320.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g02440.2	"WD repeat-containing protein 44, putative, expressed"	Medtr1g008870.1	"WD-40 repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212563.1.S1_at	A	A1TS	POPTR_0015s01220	POPTR_0015s01220 (11)	scaffold_15:771066-771501(+) (11)	NA	P81760	"Thylakoid lumenal 17.4 kDa protein, chloroplastic"	AT5G53490.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35810.1	"thylakoid lumenal protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212565.1.S1_at	A	A1TS	POPTR_0015s01250	POPTR_0015s01250 (10)	scaffold_15:789476-789932(+) (10)	NA	Q9STP8	Acyl-CoA-binding domain-containing protein 2	AT4G27780.1	acyl-CoA binding protein 2 	LOC_Os04g58550.1	"acyl-CoA-binding domain-containing protein 6, putative, expressed"	Medtr5g046490.1	Ankyrin 	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.212567.1.S1_at	A	A1TS	POPTR_0015s01260	POPTR_0015s01260 (11)	scaffold_15:792777-793188(+) (11)	NA	B5X186	Calumenin-A	AT4G27790.1	Calcium-binding EF hand family protein 	LOC_Os04g58480.1	"EF hand family protein, putative, expressed"	Medtr8g024400.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212567.1.S1_s_at	A	A1TS	POPTR_0015s01260	POPTR_0015s01260 (11)	scaffold_15:793178-794394(+) (11)	NA	B5X186	Calumenin-A	AT4G27790.1	Calcium-binding EF hand family protein 	LOC_Os04g58480.1	"EF hand family protein, putative, expressed"	Medtr8g024400.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212569.1.S1_at	A	A1MS	POPTR_0015s01330	POPTR_0015s01330 (10)	scaffold_15:826547-827527(+) (10)	NA	NA	NA	AT5G26760.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g04370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212570.1.S1_at	A	A1TS	POPTR_0015s01330	POPTR_0015s01330 (11)	scaffold_15:828823-830535(+) (11)	NA	NA	NA	AT5G26760.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g04370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212571.1.S1_at	A	A1MS	POPTR_0015s01340	POPTR_0015s01340 (11)	scaffold_15:831468-831945(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27570.1	"OsFBA3 - F-box and FBA domain containing protein, expressed"	Medtr2g029990.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212572.1.S1_at	A	A1TS	POPTR_0015s01360	POPTR_0015s01360 (11)	scaffold_15:841426-843302(-) (11)	NA	Q9ZR09	Putative F-box/FBD/LRR-repeat protein At4g03220	AT4G03220.1	Protein with RNI-like/FBD-like domains 	LOC_Os10g03870.1	"OsFBX353 - F-box domain containing protein, expressed"	Medtr8g018890.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212573.1.S1_at	A	A1TS	POPTR_0015s01380	POPTR_0015s01380 (11)	scaffold_15:852608-854457(+) (11)	NA	NA	NA	AT5G53050.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g46460.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g008980.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212574.1.S1_at	A	A1TS	POPTR_0015s01400	POPTR_0015s01400 (11)	scaffold_15:862617-862771(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212575.1.S1_at	A	A1TS	POPTR_0015s01410	POPTR_0015s01410 (11)	scaffold_15:864318-865014(+) (11)	NA	Q9LVU8	Protein RKD4	AT5G53040.1	RWP-RK domain-containing protein 	LOC_Os01g37100.1	"RWP-RK domain-containing protein, putative, expressed"	Medtr3g123690.1	Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212576.1.S1_at	A	A1TS	POPTR_0015s01420	POPTR_0015s01420 (11)	scaffold_15:867645-868578(-) (11)	NA	NA	NA	AT4G27810.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53030.1); Has 73 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g009040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212578.1.S1_at	A	A1TS	POPTR_0015s01460	POPTR_0015s01460 (11)	scaffold_15:893824-894154(-) (11)	NA	Q84WF5	Probable VAMP-like protein At1g33475	AT5G52990.1	SNARE-like superfamily protein 	LOC_Os08g44430.2	"vesicle-associated membrane protein 727, putative, expressed"	Medtr3g123790.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212579.1.S1_at	A	A1TS	POPTR_0015s01470	POPTR_0015s01470 (11)	scaffold_15:901341-901804(-) (11)	NA	Q9FNF2	"Soluble starch synthase, chloroplastic/amyloplastic"	AT5G24300.2	"Glycogen/starch synthases, ADP-glucose type "	LOC_Os06g06560.1	"starch synthase, putative, expressed"	Medtr3g123800.1	"Glycosyl transferase, group 1; N-6 Adenine-specific DNA methylase "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.212579.1.S1_s_at	A	A1TS	POPTR_0015s01470	POPTR_0015s01470 (11)	scaffold_15:899383-901991(-) (11)	NA	Q9FNF2	"Soluble starch synthase, chloroplastic/amyloplastic"	AT5G24300.2	"Glycogen/starch synthases, ADP-glucose type "	LOC_Os06g06560.1	"starch synthase, putative, expressed"	Medtr3g123800.1	"Glycosyl transferase, group 1; N-6 Adenine-specific DNA methylase "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.212580.1.S1_at	A	A1TS	POPTR_0015s01490	POPTR_0015s01490 (11)	scaffold_15:923930-925609(+) (11)	NA	NA	NA	AT3G49250.1	defective in meristem silencing 3 	LOC_Os01g13404.1	"ATP binding protein, putative, expressed"	Medtr3g123840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212581.1.S1_at	A	A1TS	POPTR_0015s01510	POPTR_0015s01510 (10)	scaffold_15:935189-936311(+) (10)	NA	Q7LBC6	Lysine-specific demethylase 3B	AT4G00990.1	Transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os03g31594.1	"jmjC domain containing protein, expressed"	Medtr1g009190.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, RING-type; Transcription factor jumonji, jmjC; "	NA	GO:0003677|DNA binding	NA
PtpAffx.212582.1.S1_at	A	A1TS	POPTR_0015s01510	POPTR_0015s01510 (11)	scaffold_15:940958-942432(+) (11)	NA	Q7LBC6	Lysine-specific demethylase 3B	AT4G00990.1	Transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os03g31594.1	"jmjC domain containing protein, expressed"	Medtr1g009190.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, RING-type; Transcription factor jumonji, jmjC; "	NA	GO:0003677|DNA binding	NA
PtpAffx.212583.1.S1_at	A	A1TS	POPTR_0015s01570	POPTR_0015s01570 (9)	scaffold_15:986722-988300(+) (11)	NA	Q8BVG4	Dipeptidyl peptidase 9	AT5G24260.1	prolyl oligopeptidase family protein 	LOC_Os02g18850.1	"OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr3g124020.2	"Peptidase S9, prolyl oligopeptidase active site region; Peptidase S9B, dipeptidylpeptidase IV N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	GO:0016020|membrane
PtpAffx.212584.1.S1_at	A	A1TS	POPTR_0015s01580	POPTR_0015s01580 (11)	scaffold_15:994317-994910(+) (11)	NA	Q9C9Y4	F-box protein At3g08750	AT4G10190.1	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212585.1.S1_at	A	A1TS	POPTR_0015s01600	POPTR_0015s01600 (11)	scaffold_15:1000698-1001184(+) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT5G24240.1	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr3g124030.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.212586.1.S1_at	A	A1MS	POPTR_0015s01640	POPTR_0015s01640 (11)	scaffold_15:1035766-1036424(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212588.1.S1_at	A	A1TS	POPTR_0015s01660	POPTR_0015s01660 (11)	scaffold_15:1068762-1069192(+) (11)//scaffold_15:1099324-1099414(-) (10)	NA	Q9LRX6	Putative B3 domain-containing protein At3g24850	AT3G24850.1	Domain of unknown function (DUF313)  	NA	NA	Medtr5g100180.1	Protein of unknown function DUF313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212588.1.S1_s_at	A	A2TS	POPTR_0015s01660	POPTR_0015s01710 (11)//POPTR_0015s01660 (11)	scaffold_15:1068839-1069104(+) (11)//scaffold_15:1099412-1099677(-) (11)	NA	Q9LRX6	Putative B3 domain-containing protein At3g24850	AT3G24850.1	Domain of unknown function (DUF313)  	NA	NA	Medtr5g100180.1	Protein of unknown function DUF313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212589.1.S1_at	A	A1TS	POPTR_0015s01680	POPTR_0015s01680 (11)	scaffold_15:1081508-1082296(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212590.1.S1_at	A	A1TS	POPTR_0015s01690	POPTR_0015s01690 (11)	scaffold_15:1088615-1089932(+) (11)	NA	NA	NA	AT3G61700.2	Plant protein 1589 of unknown function 	LOC_Os05g12170.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212591.1.S1_at	A	A1TS	POPTR_0015s01700	POPTR_0015s01700 (11)	scaffold_15:1090200-1092498(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212592.1.S1_at	A	A1TS	POPTR_0015s01710	POPTR_0015s01710 (11)	scaffold_15:1069214-1069386(+) (10)//scaffold_15:1099134-1099302(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212593.1.S1_x_at	A	A3TS	POPTR_0015s01730	POPTR_0015s01740 (10)//POPTR_0015s01750 (10)//POPTR_0015s01730 (10)	scaffold_15:1120759-1120915(+) (11)//scaffold_15:1136457-1136613(+) (11)//scaffold_15:1153425-1153581(+) (10)	NA	Q9FNZ2	Zinc finger CCCH domain-containing protein 48	AT4G25440.1	zinc finger WD40 repeat protein 1 	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212594.1.S1_x_at	A	A2TS	POPTR_0248s00220	POPTR_0248s00220 (11)//POPTR_0015s01780 (10)	scaffold_15:1164592-1174339(+) (11)//scaffold_248:27468-32006(-) (11)//scaffold_248:31985-41125(-) (11)	POPTR_0015s01770 (7)//POPTR_0015s01760 (7)	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212595.1.S1_at	A	A1TS	POPTR_0248s00200	POPTR_0248s00200 (11)	scaffold_248:39451-39604(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212595.1.S1_x_at	A	A1TS	POPTR_0248s00200	POPTR_0248s00200 (11)	scaffold_248:39394-39604(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212597.1.S1_at	A	A1TS	POPTR_0015s01780	POPTR_0015s01780 (11)	scaffold_15:1165261-1175124(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212598.1.S1_x_at	A	A1TS	POPTR_0015s01790	POPTR_0015s01790 (11)	scaffold_15:1164597-1181558(+) (11)	POPTR_0248s00220 (6)	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212599.1.S1_at	A	A1TS	POPTR_0015s01800	POPTR_0015s01800 (11)	scaffold_15:1182576-1182752(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212599.1.S1_x_at	A	A1TS	POPTR_0015s01800	POPTR_0015s01800 (11)	scaffold_15:1182576-1182811(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212601.1.S1_at	A	A1TS	POPTR_0015s01810	POPTR_0015s01810 (11)	scaffold_15:1207788-1208094(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212602.1.S1_at	A	A1TS	POPTR_0015s01820	POPTR_0015s01820 (11)	scaffold_15:1224584-1224861(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212603.1.S1_at	A	A1TS	POPTR_0015s01830	POPTR_0015s01830 (11)	scaffold_15:1235698-1235886(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212603.1.S1_x_at	A	A1TS	POPTR_0015s01830	POPTR_0015s01830 (11)	scaffold_15:1235611-1235958(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212604.1.S1_x_at	A	A1TS	POPTR_0015s01840	POPTR_0015s01840 (11)	scaffold_15:1247469-1247827(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212606.1.S1_s_at	A	A1TS	POPTR_0492s00200	POPTR_0492s00200 (11)	scaffold_15:1275596-1275647(+) (11)//scaffold_492:3163-3214(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212608.1.S1_at	A	A1TS	POPTR_0015s01880	POPTR_0015s01880 (11)	scaffold_15:1294953-1296768(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212609.1.S1_at	A	A1TS	POPTR_0015s01900	POPTR_0015s01900 (11)	scaffold_15:1306089-1306140(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212609.1.S1_x_at	A	A1TS	POPTR_0015s01900	POPTR_0015s01900 (11)	scaffold_15:1305767-1306140(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212610.1.S1_at	A	A1TS	POPTR_0015s01920	POPTR_0015s01920 (11)	scaffold_15:1323243-1325208(-) (11)	NA	Q12874	Splicing factor 3A subunit 3	AT5G06160.1	splicing factor-related 	LOC_Os03g50850.1	"ZOS3-17 - C2H2 zinc finger protein, expressed"	Medtr3g124240.1	"Zinc finger, C2H2-type matrin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212612.1.S1_at	A	A1TS	POPTR_0015s01960	POPTR_0015s01960 (11)	scaffold_15:1369987-1370671(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212613.1.S1_at	A	A1TS	POPTR_0015s01980	POPTR_0015s01980 (11)	scaffold_15:1374005-1376564(+) (11)	NA	P0CH01	Putative RING-H2 finger protein ATL21A	AT5G53110.1	RING/U-box superfamily protein 	LOC_Os12g04130.1	OsFBO23 - F-box and other domain containing protein	Medtr3g124280.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212615.1.S1_at	A	A1TS	POPTR_0015s02020	POPTR_0015s02020 (9)	scaffold_15:1397746-1398328(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr6g043710.1	"membrane located receptor-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212616.1.S1_s_at	A	A1MS	POPTR_0015s02050	POPTR_0015s02050 (11)	scaffold_15:1404359-1404769(-) (11)	NA	Q9FID6	Probable receptor-like protein kinase At5g39020	AT5G39020.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g02460.1	"receptor kinase LRK10, putative"	Medtr1g034830.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212617.1.S1_at	A	A1MS	POPTR_0015s02060	POPTR_0015s02060 (10)	scaffold_15:1407516-1408178(+) (10)	NA	Q5G1T1	"Pentatricopeptide repeat-containing protein At3g49170, chloroplastic"	AT3G49170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g12130.1	"EMB2261, putative, expressed"	Medtr4g032250.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212618.1.S1_at	A	A1TS	POPTR_0015s02060	POPTR_0015s02060 (11)	scaffold_15:1410832-1411168(+) (11)	NA	Q5G1T1	"Pentatricopeptide repeat-containing protein At3g49170, chloroplastic"	AT3G49170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g12130.1	"EMB2261, putative, expressed"	Medtr4g032250.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212619.1.S1_at	A	A1TS	POPTR_0015s00200	POPTR_0015s00200 (11)	scaffold_15:4187-4287(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50160.1	Plant protein of unknown function (DUF247) 	LOC_Os08g02820.1	plant protein of unknown function domain containing protein	Medtr8g045180.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212619.1.S1_s_at	A	A2TS	POPTR_0015s00200	POPTR_0015s02080 (11)//POPTR_0015s00200 (11)	scaffold_15:4041-4521(+) (11)//scaffold_15:1419183-1419666(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50160.1	Plant protein of unknown function (DUF247) 	LOC_Os08g02820.1	plant protein of unknown function domain containing protein	Medtr8g045180.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212620.1.S1_at	A	A1TS	POPTR_0015s02110	POPTR_0015s02110 (11)	scaffold_15:1449802-1450551(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212622.1.S1_at	A	A1TS	POPTR_0015s02120	POPTR_0015s02120 (11)	scaffold_15:1458870-1459152(-) (11)	NA	NA	NA	AT3G61700.2	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212623.1.S1_at	A	A1TS	POPTR_0015s02160	POPTR_0015s02160 (11)	scaffold_15:1478098-1479422(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212624.1.S1_at	A	A1TS	POPTR_0015s02170	POPTR_0015s02170 (11)	scaffold_15:1483474-1484008(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G61430.1	NAC domain containing protein 100 	LOC_Os04g38720.1	"no apical meristem protein, putative, expressed"	Medtr6g013180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.212625.1.S1_at	A	A1TS	POPTR_0015s02190	POPTR_0015s02190 (11)	scaffold_15:1517310-1518488(+) (11)	NA	O50401	Trehalose-phosphate phosphatase	AT1G35910.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os02g51680.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr3g124490.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.212626.1.S1_at	A	A1MS	POPTR_0015s02200	POPTR_0015s02200 (9)	scaffold_15:1532131-1532262(-) (9)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.212628.1.S1_at	A	A1TS	POPTR_0015s02230	POPTR_0015s02230 (11)	scaffold_15:1571921-1571957(-) (11)	NA	Q9FGM0	"ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial"	AT5G53170.1	FTSH protease 11 	LOC_Os01g43150.1	"OsFtsH9  FtsH protease, homologue of AtFtsH11, expressed"	Medtr3g139890.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.212628.1.S1_s_at	A	A2TS	POPTR_0012s01540	POPTR_0012s01540 (11)//POPTR_0015s02230 (11)	scaffold_12:1162388-1162520(+) (11)//scaffold_15:1571855-1571987(-) (11)	NA	Q9FGM0	"ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial"	AT5G53170.1	FTSH protease 11 	LOC_Os01g43150.1	"OsFtsH9  FtsH protease, homologue of AtFtsH11, expressed"	Medtr3g139890.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.212629.1.S1_at	A	A1TS	POPTR_0015s02260	POPTR_0015s02260 (11)	scaffold_15:1592369-1592542(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212630.1.S1_s_at	A	A2TS	POPTR_0015s02270	POPTR_1647s00200 (11)//POPTR_0015s02270 (11)	scaffold_15:1600301-1600422(+) (11)//scaffold_15:6463374-6463495(-) (11)//scaffold_1647:3638-3756(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212632.1.S1_at	A	A1TS	POPTR_0015s06190	POPTR_0015s06190 (11)	scaffold_15:6486119-6486309(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212633.1.S1_s_at	A	A2TS	POPTR_0015s02280	POPTR_0015s02280 (11)//POPTR_0015s06180 (11)	scaffold_15:1602541-1603456(-) (11)//scaffold_15:6470276-6471190(+) (11)	NA	NA	NA	AT5G24130.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g15740.1	expressed protein	Medtr3g124560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212636.1.S1_s_at	A	A1TS	POPTR_0015s06200	POPTR_0015s06200 (11)	scaffold_15:6508514-6509111(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212638.1.S1_at	A	A1TS	POPTR_0015s03060	POPTR_0015s03060 (11)	scaffold_15:2573235-2574761(-) (11)	NA	Q557M8	General transcription factor IIE subunit 1	AT1G03280.1	"Transcription factor TFIIE, alpha subunit "	LOC_Os08g25460.1	"transcription initiation factor, putative, expressed"	Medtr8g092930.1	"Transcription factor TFIIE, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	NA
PtpAffx.212639.1.S1_at	A	A1TS	POPTR_0015s03120	POPTR_0015s03120 (11)	scaffold_15:2653066-2653361(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212640.1.S1_s_at	A	A2TS	POPTR_0012s05660	POPTR_0015s03140 (11)//POPTR_0012s05660 (11)	scaffold_12:5400818-5400911(-) (11)//scaffold_15:2687938-2688031(-) (11)	NA	A1YKT1	Transcription factor TCP18	AT3G18550.2	TCP family transcription factor  	LOC_Os03g49880.1	"TCP family transcription factor, putative, expressed"	AC233675_3.1	TCP transcription factor AC233675.1 11574-12645 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212641.1.S1_at	A	A1TS	POPTR_0015s03150	POPTR_0015s03150 (11)	scaffold_15:2699651-2700015(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212642.1.S1_at	A	A1TS	POPTR_0015s03370	POPTR_0015s03370 (11)	scaffold_15:2878812-2879009(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212642.1.S1_x_at	A	A1TS	POPTR_0015s03370	POPTR_0015s03370 (11)	scaffold_15:2878812-2879009(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212643.1.S1_at	A	A1TS	POPTR_0015s03375	POPTR_0015s03375 (11)	scaffold_15:2879341-2879805(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212645.1.S1_at	A	A1TS	POPTR_0015s03400	POPTR_0015s03400 (11)	scaffold_15:2930467-2931026(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g026580.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212646.1.S1_at	A	A1TS	POPTR_0015s03410	POPTR_0015s03410 (11)	scaffold_15:2940730-2941321(-) (11)	NA	NA	NA	AT5G39380.1	Plant calmodulin-binding protein-related 	LOC_Os03g11290.1	expressed protein	Medtr6g013960.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212647.1.S1_at	A	A1TS	POPTR_0015s03460	POPTR_0015s03460 (11)	scaffold_15:3011166-3012276(-) (11)	NA	NA	NA	AT5G07890.3	myosin heavy chain-related 	LOC_Os07g40770.1	"myosin heavy chain-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212648.1.S1_at	A	A1TS	POPTR_0015s03460	POPTR_0015s03460 (10)	scaffold_15:3014622-3014864(-) (11)	NA	NA	NA	AT5G07890.3	myosin heavy chain-related 	LOC_Os07g40770.1	"myosin heavy chain-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212649.1.S1_at	A	A1TS	POPTR_0015s03480	POPTR_0015s03480 (11)	scaffold_15:3037849-3039187(+) (11)	NA	Q9ZPQ3	D-aminoacyl-tRNA deacylase	AT2G03800.1	D-aminoacyl-tRNA deacylases 	LOC_Os08g25140.1	"ethanol tolerance protein GEKO1, putative, expressed"	Medtr8g077420.1	Protein of unknown function DUF516 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212650.1.S1_at	A	A1TS	POPTR_0015s03490	POPTR_0015s03490 (11)	scaffold_15:3054121-3055127(+) (11)	NA	NA	NA	AT5G60880.1	breaking of asymmetry in the stomatal lineage 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212651.1.S1_at	A	A1TS	POPTR_0015s03510	POPTR_0015s03510 (10)	scaffold_15:3075262-3076569(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g049800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212652.1.S1_x_at	A	A1TS	POPTR_0015s03530	POPTR_0015s03530 (11)	scaffold_15:3170234-3172618(-) (11)	NA	Q9SHY8	Pre-mRNA-splicing factor SLU7-A	AT1G65660.1	Pre-mRNA splicing Prp18-interacting factor 	LOC_Os08g03390.1	"pre-mRNA-splicing factor SLU7, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.212653.1.S1_at	A	A1TS	POPTR_0015s03550	POPTR_0015s03550 (10)	scaffold_15:3247696-3249688(-) (11)	NA	Q9LEZ3	Transcription factor BIM1	AT5G08130.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.212654.1.S1_at	A	A1TS	POPTR_0015s03560	POPTR_0015s03560 (11)	scaffold_15:3301697-3301903(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G08139.1	RING/U-box superfamily protein 	LOC_Os12g02620.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC146721_14.1	"Zinc finger, RING-type AC146721.7 82004-80669 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212657.1.S1_at	A	A1TS	POPTR_0015s03580	POPTR_0015s03580 (10)	scaffold_15:3325173-3325430(+) (11)	NA	NA	NA	AT5G60830.1	basic leucine-zipper 70 	LOC_Os02g49560.1	"bZIP transcription factor domain containing protein, expressed"	AC146721_11.1	"bZIP transcription factor, bZIP_1 AC146721.7 56450-55611 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.212658.1.S1_at	A	A1TS	POPTR_0015s03610	POPTR_0015s03610 (11)	scaffold_15:3394789-3395370(-) (11)	NA	Q0WN60	Pentatricopeptide repeat-containing protein At1g18485	AT1G18485.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g39410.1	"pentatricopeptide, putative, expressed"	Medtr2g074200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212659.1.S1_at	A	A1MS	POPTR_0015s03620	POPTR_0015s03620 (11)	scaffold_15:3409255-3409400(-) (11)	NA	P73689	Protease 4	AT1G73990.1	signal peptide peptidase 	LOC_Os02g49570.1	"OsProtIV1 - Putative Protease IV homologue; Domain 2 is a SPH, expressed"	Medtr2g074180.1	"Peptidase S49, SppA "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.212660.1.S1_at	A	A1MS	POPTR_0015s03640	POPTR_0015s03640 (10)	scaffold_15:3430606-3432245(+) (11)	NA	O81635	Kinesin-4	AT1G63640.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os01g54080.1	"kinesin motor protein-related, putative, expressed"	Medtr4g158250.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.212662.1.S1_at	A	A1TS	POPTR_0015s03650	POPTR_0015s03650 (11)	scaffold_15:3442127-3443259(-) (11)//scaffold_407:4839-5966(-) (9)	POPTR_0407s00200 (6)	Q6L4L4	E3 SUMO-protein ligase SIZ1	AT5G60410.5	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr2g110860.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.212664.1.S1_at	A	A1TS	POPTR_0015s03690	POPTR_0015s03690 (11)	scaffold_15:3512482-3513172(-) (11)	NA	NA	NA	AT1G73850.1	Protein of unknown function (DUF1666) 	LOC_Os01g03870.1	expressed protein	Medtr6g028420.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212664.1.S1_x_at	A	A1TS	POPTR_0015s03690	POPTR_0015s03690 (11)	scaffold_15:3512455-3513172(-) (11)	NA	NA	NA	AT1G73850.1	Protein of unknown function (DUF1666) 	LOC_Os01g03870.1	expressed protein	Medtr6g028420.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212665.1.S1_at	A	A1TS	POPTR_0015s03700	POPTR_0015s03700 (11)	scaffold_15:3533239-3534762(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT3G18400.1	NAC domain containing protein 58 	LOC_Os03g42630.1	"No apical meristem protein, putative, expressed"	Medtr6g028410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.212665.1.S1_x_at	A	A1TS	POPTR_0015s03700	POPTR_0015s03700 (11)	scaffold_15:3533239-3534762(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT3G18400.1	NAC domain containing protein 58 	LOC_Os03g42630.1	"No apical meristem protein, putative, expressed"	Medtr6g028410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.212666.1.S1_at	A	A1TS	POPTR_0015s03730	POPTR_0015s03730 (11)	scaffold_15:3561444-3562007(+) (11)	NA	NA	NA	AT3G18360.1	VQ motif-containing protein 	NA	NA	Medtr6g028170.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212667.1.S1_at	A	A1TS	POPTR_0015s03740	POPTR_0015s03740 (11)	scaffold_15:3563617-3564226(-) (11)	NA	NA	NA	AT1G48840.1	Plant protein of unknown function (DUF639) 	LOC_Os10g03830.1	expressed protein	Medtr6g028160.2	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212668.1.S1_at	A	A1TS	POPTR_0015s03750	POPTR_0015s03750 (11)	scaffold_15:3575391-3576135(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212670.1.S1_at	A	A1TS	POPTR_0015s03780	POPTR_0015s03780 (11)	scaffold_15:3674530-3674948(+) (11)	NA	Q9ZNS1	40S ribosomal protein S7	AT1G48830.2	Ribosomal protein S7e family protein 	LOC_Os03g18580.1	"40S ribosomal protein S7, putative"	Medtr6g022820.1	Ribosomal protein S7E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.212671.1.S1_at	A	A1TS	POPTR_0015s03820	POPTR_0015s03820 (11)	scaffold_15:3701184-3701688(+) (11)	NA	NA	NA	AT1G48780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18300.1); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	NA	NA	Medtr4g158110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212672.1.S1_at	A	A1TS	POPTR_0015s03830	POPTR_0015s03830 (11)	scaffold_15:3724395-3724970(+) (11)	NA	Q9C744	AP-3 complex subunit delta	AT1G48760.3	delta-adaptin 	LOC_Os01g32880.1	"AP-3 complex subunit delta, putative, expressed"	Medtr4g158040.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.212673.1.S1_at	A	A1TS	POPTR_0015s03840	POPTR_0015s03840 (11)	scaffold_15:3754562-3755137(+) (11)	NA	NA	NA	AT5G16170.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g52120.1	"DNA binding protein, putative, expressed"	Medtr1g140570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.212675.1.S1_at	A	A1TS	POPTR_0015s03860	POPTR_0015s03860 (11)	scaffold_15:3786384-3786568(+) (11)	NA	NA	NA	AT1G73805.1	Calmodulin binding protein-like 	LOC_Os01g04280.1	"calmodulin binding protein, putative, expressed"	Medtr4g157950.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212675.1.S1_s_at	A	A1TS	POPTR_0015s03860	POPTR_0015s03860 (11)	scaffold_15:3784467-3784764(+) (11)	NA	NA	NA	AT1G73805.1	Calmodulin binding protein-like 	LOC_Os01g04280.1	"calmodulin binding protein, putative, expressed"	Medtr4g157950.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212676.1.S1_s_at	A	A2TS	POPTR_0160s00210	POPTR_0160s00210 (11)//POPTR_0015s03870 (9)	scaffold_15:3790329-3790681(+) (9)//scaffold_160:19654-20009(-) (11)//scaffold_160:39382-39735(+) (9)	POPTR_0160s00260 (7)	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.2	Protein kinase superfamily protein 	NA	NA	Medtr4g157930.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212677.1.S1_at	A	A1TS	POPTR_0015s03880	POPTR_0015s03880 (10)	scaffold_15:3796958-3797311(-) (10)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.2	Protein kinase superfamily protein 	LOC_Os01g04409.1	"OsWAK1 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.2	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212678.1.S1_at	A	A1TS	POPTR_0160s00250	POPTR_0160s00250 (11)	scaffold_160:36926-37269(-) (11)	NA	Q5BQ05	Uncharacterized protein At1g18380	AT5G38260.1	Protein kinase superfamily protein 	NA	NA	Medtr4g157930.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212678.1.S1_s_at	A	A4TS	POPTR_0160s00220	POPTR_0160s00250 (11)//POPTR_0160s00220 (11)//POPTR_0373s00210 (11)//POPTR_0015s03890 (9)	scaffold_15:3802288-3802768(-) (11)//scaffold_160:22239-22724(+) (11)//scaffold_160:36862-37335(-) (11)//scaffold_373:11699-12184(-) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT5G38260.1	Protein kinase superfamily protein 	NA	NA	Medtr4g157930.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212679.1.S1_at	A	A3TS	POPTR_0015s03870	POPTR_0160s00210 (9)//POPTR_0015s03870 (9)//POPTR_0160s00260 (9)	scaffold_15:3790800-3790839(+) (9)//scaffold_160:19496-19535(-) (9)//scaffold_160:39854-39893(+) (9)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66910.1	Protein kinase superfamily protein 	LOC_Os01g04460.1	"Ser/Thr protein kinase, putative"	Medtr6g027800.1	Neurohypophysial hormone; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212681.1.S1_s_at	A	A2TS	POPTR_0015s03880	POPTR_0373s00210 (11)//POPTR_0015s03880 (11)	scaffold_15:3794813-3794992(-) (11)//scaffold_160:30223-30402(-) (11)//scaffold_160:48288-48467(-) (11)//scaffold_373:8684-8863(-) (11)	POPTR_0160s00240 (7)	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.2	Protein kinase superfamily protein 	LOC_Os01g04409.1	"OsWAK1 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.2	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212682.1.S1_at	A	A1TS	POPTR_0015s03900	POPTR_0015s03900 (11)	scaffold_15:3827763-3828374(+) (11)	NA	Q54NP8	Kinesin-related protein 4	AT1G18370.1	ATP binding microtubule motor family protein 	LOC_Os01g33040.1	"kinesin motor domain containing protein, expressed"	Medtr8g133190.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.212682.1.S1_x_at	A	A1TS	POPTR_0015s03900	POPTR_0015s03900 (11)	scaffold_15:3827747-3828374(+) (11)	NA	Q54NP8	Kinesin-related protein 4	AT1G18370.1	ATP binding microtubule motor family protein 	LOC_Os01g33040.1	"kinesin motor domain containing protein, expressed"	Medtr8g133190.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.212684.1.S1_at	A	A1MS	POPTR_0015s03970	POPTR_0015s03970 (11)	scaffold_15:3882515-3883067(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT1G73760.1	RING/U-box superfamily protein 	LOC_Os01g49770.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g096250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212686.1.S1_at	A	A2TS	POPTR_0015s04000	POPTR_0015s04030 (10)//POPTR_0015s04000 (10)	scaffold_15:3895692-3895974(+) (10)//scaffold_15:3935718-3936000(+) (10)	NA	Q40392	TMV resistance protein N	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.212688.1.S1_s_at	A	A2TS	POPTR_0015s04000	POPTR_0015s04030 (11)//POPTR_0015s04000 (11)	scaffold_15:3895097-3895409(+) (11)//scaffold_15:3935123-3935435(+) (11)	NA	Q40392	TMV resistance protein N	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.212690.1.S1_at	A	A1TS	POPTR_0015s04110	POPTR_0015s04110 (11)	scaffold_15:4119023-4121139(-) (11)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT3G18210.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.2	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.212690.1.S1_s_at	A	A2TS	POPTR_0012s04870	POPTR_0012s04870 (11)//POPTR_0015s04110 (11)	scaffold_12:4285139-4286317(+) (11)//scaffold_15:4119947-4121199(-) (11)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT3G18210.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.212691.1.S1_at	A	A1TS	POPTR_0015s04130	POPTR_0015s04130 (11)	scaffold_15:4148486-4149405(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G18200.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os01g02870.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr6g086240.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.212692.1.S1_at	A	A1TS	POPTR_0015s04140	POPTR_0015s04140 (11)	scaffold_15:4164918-4165277(+) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212693.1.S1_at	A	A1TS	POPTR_0015s04150	POPTR_0015s04150 (11)	scaffold_15:4181133-4181557(-) (11)	NA	Q9NB32	T-complex protein 1 subunit delta	AT3G18190.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os02g22780.1	"T-complex protein, putative, expressed"	Medtr4g156440.1	"Haem peroxidase, plant/fungal/bacterial; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.212694.1.S1_at	A	A1TS	POPTR_0015s04180	POPTR_0015s04180 (11)	scaffold_15:4223551-4224066(-) (11)	NA	NA	NA	AT3G18180.1	Glycosyltransferase family 61 protein 	LOC_Os02g04250.1	"glycosyltransferase, putative, expressed"	Medtr4g155630.4	Protein of unknown function DUF563 	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.212696.1.S1_at	A	A1TS	POPTR_0015s04260	POPTR_0015s04260 (11)	scaffold_15:4313563-4315880(-) (11)	NA	Q54NA6	Myb-like protein L	AT3G18100.1	myb domain protein 4r1 	LOC_Os07g04700.1	"MYB family transcription factor, putative, expressed"	AC233685_2.1	Homeodomain-related; AC233685.2 1460-8854 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212697.1.S1_at	A	A1MS	POPTR_0015s04270	POPTR_0015s04270 (11)	scaffold_15:4331518-4332569(+) (11)	NA	Q8L6Z7	Exonuclease 1	AT1G18090.1	5'-3' exonuclease family protein 	LOC_Os01g56940.1	"flap endonuclease, putative, expressed"	Medtr4g136470.1	"Helix-hairpin-helix motif, class 2 "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0004518|nuclease activity	NA
PtpAffx.212699.1.S1_at	A	A1TS	POPTR_0015s04300	POPTR_0015s04300 (11)	scaffold_15:4362541-4363724(-) (11)	NA	Q9S9K9	Transcription factor MYB3	AT1G22640.1	myb domain protein 3 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212704.1.S1_at	A	A1TS	POPTR_0015s04480	POPTR_0015s04480 (11)	scaffold_15:4618982-4619381(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212704.1.S1_x_at	A	A1TS	POPTR_0015s04480	POPTR_0015s04480 (11)	scaffold_15:4618982-4619380(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212705.1.S1_at	A	A1TS	POPTR_0015s04490	POPTR_0015s04490 (11)	scaffold_15:4620111-4620679(-) (11)	NA	Q9LSK8	Pentatricopeptide repeat-containing protein At3g18020	AT3G18020.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g47720.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g076510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212706.1.S1_at	A	A1TS	POPTR_0015s04520	POPTR_0015s04520 (11)	scaffold_15:4659015-4659058(-) (11)	NA	Q6X7K0	WUSCHEL-related homeobox 1	AT3G18010.1	WUSCHEL related homeobox 1 	LOC_Os05g02730.1	"homeobox domain containing protein, expressed"	Medtr4g154980.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.212706.1.S1_x_at	A	A1TS	POPTR_0015s04520	POPTR_0015s04520 (11)	scaffold_15:4658954-4659058(-) (11)	NA	Q6X7K0	WUSCHEL-related homeobox 1	AT3G18010.1	WUSCHEL related homeobox 1 	LOC_Os05g02730.1	"homeobox domain containing protein, expressed"	Medtr4g154980.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.212708.1.S1_s_at	A	A1TS	POPTR_0005s17830	POPTR_0005s17830 (11)	scaffold_15:4718988-4719026(+) (11)//scaffold_5:15579547-15579585(+) (11)//scaffold_6:11658846-11658997(-) (11)	NA	Q0VQ52	Malate dehydrogenase	AT5G56720.1	Lactate/malate dehydrogenase family protein 	LOC_Os04g46560.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr8g005780.1	"Malate dehydrogenase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212710.1.S1_s_at	A	A1TS	POPTR_0015s04580	POPTR_0015s04580 (11)	scaffold_15:4786452-4788837(-) (11)	NA	Q5X4H5	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT3G17970.1	translocon at the outer membrane of chloroplasts 64-III 	LOC_Os03g50010.1	"toc64, putative, expressed"	Medtr4g154900.1	Amidase; 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.212712.1.S1_at	A	A1TS	POPTR_0015s04630	POPTR_0015s04630 (11)	scaffold_15:4823457-4827056(+) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT1G48570.1	zinc finger (Ran-binding) family protein 	LOC_Os03g50120.1	"zinc finger family protein, putative, expressed"	Medtr6g083530.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.212713.1.S1_at	A	A1TS	POPTR_0015s04640	POPTR_0015s04640 (11)	scaffold_15:4847167-4849161(-) (11)	NA	Q5TEA6	Protein sel-1 homolog 2	AT1G18260.1	HCP-like superfamily protein 	LOC_Os03g15350.1	"Sel1 repeat domain containing protein, putative, expressed"	Medtr4g154740.1	Sel1-like repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212714.1.S1_s_at	A	A1TS	POPTR_0015s04650	POPTR_0015s04650 (11)	scaffold_15:4865905-4867696(+) (11)	NA	P80461	"Glutathione reductase, chloroplastic (Fragment)"	AT3G54660.1	glutathione reductase 	LOC_Os03g06740.1	"glutathione reductase, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
PtpAffx.212715.1.S1_at	A	A1TS	POPTR_0015s04660	POPTR_0015s04660 (11)	scaffold_15:4882618-4883261(+) (11)	NA	P92976	Strictosidine synthase 3	AT1G74000.1	strictosidine synthase 3 	LOC_Os08g07810.1	"strictosidine synthase, putative"	Medtr8g115480.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.212716.1.S1_at	A	A1TS	POPTR_0015s04690	POPTR_0015s04690 (11)	scaffold_15:4921685-4922071(+) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g21940.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212717.1.S1_at	A	A1MS	POPTR_0015s04720	POPTR_0015s04720 (11)	scaffold_15:4940013-4940244(-) (11)	NA	Q46888	Uncharacterized oxidoreductase ygbJ	AT1G18270.2	ketose-bisphosphate aldolase class-II family protein 	LOC_Os06g14740.1	"NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed"	Medtr6g083360.1	"Ketose-bisphosphate aldolase, class-II; 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal-like; ; "	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0008270|zinc ion binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity||GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.212719.1.S1_at	A	A1TS	POPTR_0015s04830	POPTR_0015s04830 (10)	scaffold_15:5025483-5025732(+) (11)	NA	Q6P4K6	Serine/threonine-protein kinase 11-interacting protein	AT1G48540.1	Outer arm dynein light chain 1 protein 	LOC_Os03g12160.1	"leucine-rich repeat family protein, putative, expressed"	Medtr4g154700.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.212720.1.S1_at	A	A1TS	POPTR_0015s04830	POPTR_0015s04830 (9)	scaffold_15:5025901-5026033(+) (11)	NA	Q6P4K6	Serine/threonine-protein kinase 11-interacting protein	AT1G48540.1	Outer arm dynein light chain 1 protein 	LOC_Os03g12160.1	"leucine-rich repeat family protein, putative, expressed"	Medtr4g154700.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.212721.1.S1_at	A	A1TS	POPTR_0015s04830	POPTR_0015s04830 (11)	scaffold_15:5028998-5030319(+) (11)	NA	Q6P4K6	Serine/threonine-protein kinase 11-interacting protein	AT1G48540.1	Outer arm dynein light chain 1 protein 	LOC_Os03g12160.1	"leucine-rich repeat family protein, putative, expressed"	Medtr4g154700.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.212722.1.S1_at	A	A1TS	POPTR_0015s04860	POPTR_0015s04860 (11)	scaffold_15:5077250-5077756(+) (11)	NA	Q9ZUT0	ABC transporter G family member 2	AT2G37360.1	ABC-2 type transporter family protein 	LOC_Os09g23640.1	ABC-2 type transporter domain containing protein	Medtr5g032390.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.212723.1.S1_at	A	A1TS	POPTR_0015s04900	POPTR_0015s04900 (11)	scaffold_15:5135338-5136258(+) (11)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT3G17850.1	Protein kinase superfamily protein 	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212724.1.S1_at	A	A1TS	POPTR_0015s04950	POPTR_0015s04950 (11)	scaffold_15:5169240-5172976(-) (11)	NA	B8HLD2	Chaperone protein dnaJ	AT3G17830.1	Molecular chaperone Hsp40/DnaJ family protein 	LOC_Os02g56040.1	"chaperone protein dnaJ, putative, expressed"	Medtr2g126720.1	Chaperone DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.212725.1.S1_at	A	A1TS	POPTR_0015s04960	POPTR_0015s04960 (11)	scaffold_15:5179749-5180200(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g07100.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g024440.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.212726.1.S1_at	A	A1MS	POPTR_0015s04990	POPTR_0015s04990 (11)	scaffold_15:5223498-5223721(+) (11)	NA	A8MQA3	Pentatricopeptide repeat-containing protein At4g21065	AT4G21065.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g05560.1	conserved hypothetical protein	Medtr3g012790.1	"pentatricopeptide, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212726.1.S1_s_at	A	A1TS	POPTR_0015s04990	POPTR_0015s04990 (11)	scaffold_15:5223227-5223594(+) (11)	NA	A8MQA3	Pentatricopeptide repeat-containing protein At4g21065	AT4G21065.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g05560.1	conserved hypothetical protein	Medtr3g012790.1	"pentatricopeptide, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212727.1.S1_at	A	A1TS	POPTR_0015s07670	POPTR_0015s07670 (11)	scaffold_15:8966416-8966864(+) (11)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g61740.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr6g025640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.212729.1.S1_at	A	A1TS	POPTR_0015s07690	POPTR_0015s07690 (11)	scaffold_15:8992086-8993057(+) (11)	NA	B0JL93	Trigger factor	AT5G55220.1	trigger factor type chaperone family protein 	LOC_Os06g20320.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g101240.1	"Bacterial trigger factor, C-terminal "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process||GO:0015031|protein transport	NA	NA
PtpAffx.212730.1.S1_at	A	A1TS	POPTR_0015s07730	POPTR_0015s07730 (11)	scaffold_15:9015343-9018191(-) (11)	NA	Q9D832	DnaJ homolog subfamily B member 4	AT3G47940.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	AC235756_5.1	Heat shock protein DnaJ AC235756.1 49207-45302 F EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.212733.1.S1_at	A	A1MS	POPTR_0015s07770	POPTR_0015s07770 (11)	scaffold_15:9065141-9065239(+) (11)	NA	Q8BL06	Inactive ubiquitin carboxyl-terminal hydrolase 54	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.212734.1.S1_s_at	A	A1TS	POPTR_0015s07770	POPTR_0015s07770 (11)	scaffold_15:9070438-9072213(+) (11)	NA	Q8BL06	Inactive ubiquitin carboxyl-terminal hydrolase 54	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.212736.1.S1_s_at	A	A2TS	POPTR_0012s07420	POPTR_0015s07860 (11)//POPTR_0012s07420 (11)	scaffold_12:8346177-8347596(+) (11)//scaffold_15:9143529-9145191(+) (11)	NA	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os07g09580.1	"aminoacyl-tRNA synthetase, putative, expressed"	AC233677_23.1	"aminoacyl-tRNA synthetase, putative AC233677.2 135287-140524 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212737.1.S1_at	A	A1TS	POPTR_0015s07870	POPTR_0015s07870 (11)	scaffold_15:9149320-9149874(-) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	AC233677_25.1	AAA-protein subdomain AC233677.2 145026-143479 E EGN_Mt090430 200	NA	GO:0005524|ATP binding	NA
PtpAffx.212738.1.S1_at	A	A1TS	POPTR_0015s07890	POPTR_0015s07890 (11)	scaffold_15:9162083-9162433(-) (11)	NA	Q9LV16	"Probable beta-1,3-galactosyltransferase 19"	AT5G62620.1	Galactosyltransferase family protein 	LOC_Os03g58920.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g038320.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.212739.1.S1_at	A	A1TS	POPTR_0015s07900	POPTR_0015s07900 (11)	scaffold_15:9183151-9184390(+) (11)	NA	Q8LPH6	Transcription factor MYB86	AT3G28470.1	Duplicated homeodomain-like superfamily protein 	LOC_Os03g18480.1	"MYB family transcription factor, putative, expressed"	Medtr6g010080.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212739.1.S1_x_at	A	A1TS	POPTR_0015s07900	POPTR_0015s07900 (11)	scaffold_15:9183151-9184390(+) (11)	NA	Q8LPH6	Transcription factor MYB86	AT3G28470.1	Duplicated homeodomain-like superfamily protein 	LOC_Os03g18480.1	"MYB family transcription factor, putative, expressed"	Medtr6g010080.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212740.1.S1_at	A	A1TS	POPTR_0015s07910	POPTR_0015s07910 (11)	scaffold_15:9189643-9190077(+) (11)	NA	O02414	"Dynein light chain LC6, flagellar outer arm"	AT5G20110.1	Dynein light chain type 1 family protein 	LOC_Os01g37490.1	"dynein light chain type 1 domain containing protein, expressed"	AC233677_8.1	"Dynein light chain, type 1 AC233677.2 49859-51597 E EGN_Mt090430 200"	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.212741.1.S1_at	A	A1TS	POPTR_0015s07970	POPTR_0015s07970 (11)	scaffold_15:9245223-9245808(-) (11)	NA	NA	NA	AT1G74830.1	"Protein of unknown function, DUF593 "	LOC_Os10g27480.1	expressed protein	AC233677_15.1	Protein of unknown function DUF593 AC233677.2 93257-91501 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212743.1.S1_at	A	A1TS	POPTR_0015s07980	POPTR_0015s07980 (10)	scaffold_15:9273046-9274082(+) (11)	NA	Q6P2B1	Transportin-3	AT5G62600.1	ARM repeat superfamily protein 	LOC_Os10g33770.1	importin-beta N-terminal domain containing protein	AC233677_6.1	Exportin-1/Importin-beta-like AC233677.2 40883-35967 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.212744.1.S1_at	A	A1TS	POPTR_0015s07980	POPTR_0015s07980 (11)	scaffold_15:9277938-9279161(+) (11)	NA	Q6P2B1	Transportin-3	AT5G62600.1	ARM repeat superfamily protein 	LOC_Os10g33770.1	importin-beta N-terminal domain containing protein	AC233677_6.1	Exportin-1/Importin-beta-like AC233677.2 40883-35967 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.212745.1.S1_s_at	A	A1TS	POPTR_0015s07990	POPTR_0015s07990 (11)	scaffold_15:9281813-9282876(+) (11)	NA	NA	NA	AT3G08730.1	protein-serine kinase 1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212746.1.S1_at	A	A1TS	POPTR_0015s07990	POPTR_0015s07990 (11)	scaffold_15:9282191-9282762(+) (11)	NA	NA	NA	AT3G08730.1	protein-serine kinase 1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212747.1.S1_at	A	A1TS	POPTR_0015s08000	POPTR_0015s08000 (11)	scaffold_15:9286928-9287344(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212749.1.S1_at	A	A1TS	POPTR_0015s08090	POPTR_0015s08090 (11)	scaffold_15:9371250-9371971(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212751.1.S1_at	A	A1TS	POPTR_0015s08120	POPTR_0015s08120 (11)	scaffold_15:9387756-9388290(-) (11)	NA	O04532	Formin-like protein 8	AT1G70140.1	formin 8 	LOC_Os02g50570.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g037650.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212752.1.S1_at	A	A1TS	POPTR_0015s08140	POPTR_0015s08140 (11)	scaffold_15:9407412-9407846(+) (11)	NA	NA	NA	AT3G48120.1	unknown protein; Has 22990 Blast hits to 12942 proteins in 666 species: Archae - 8; Bacteria - 739; Metazoa - 13803; Fungi - 2465; Plants - 1363; Viruses - 116; Other Eukaryotes - 4496 (source: NCBI BLink). 	LOC_Os01g49340.1	"arginine/serine-rich coiled-coil protein 1, putative, expressed"	Medtr8g124960.1	"FRAY subfamily protein kinase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212753.1.S1_at	A	A1TS	POPTR_0015s08150	POPTR_0015s08150 (11)	scaffold_15:9415213-9415767(+) (11)	NA	Q9S7R4	"Pentatricopeptide repeat-containing protein At1g74900, mitochondrial"	AT1G74900.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g45590.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g111500.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212757.1.S1_at	A	A1TS	POPTR_0015s08250	POPTR_0015s08250 (11)	scaffold_15:9524719-9525256(+) (11)	NA	Q9FJP6	U-box domain-containing protein 38	AT5G65200.1	plant U-box 38 	LOC_Os06g13080.1	"spotted leaf 11, putative, expressed"	Medtr6g008870.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.212758.1.S1_at	A	A1TS	POPTR_0015s08260	POPTR_0015s08260 (11)	scaffold_15:9528063-9531354(+) (11)	NA	Q9SJQ6	Protein ROS1	AT3G47830.1	DNA glycosylase superfamily protein 	LOC_Os06g13070.1	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	Medtr8g125200.1	HhH-GPD 	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
PtpAffx.212759.1.S1_at	A	A1TS	POPTR_0015s08300	POPTR_0015s08300 (11)	scaffold_15:9557184-9557750(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212760.1.S1_at	A	A1TS	POPTR_0015s08320	POPTR_0015s08320 (10)	scaffold_15:9585166-9585199(+) (10)	NA	NA	NA	AT5G62570.2	Calmodulin binding protein-like 	LOC_Os03g32160.1	"calmodulin binding protein, putative, expressed"	Medtr8g125240.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212760.1.S1_s_at	A	A1TS	POPTR_0015s08320	POPTR_0015s08320 (11)	scaffold_15:9584549-9585141(+) (11)	NA	NA	NA	AT5G62570.2	Calmodulin binding protein-like 	LOC_Os03g32160.1	"calmodulin binding protein, putative, expressed"	Medtr8g125240.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212762.1.S1_at	A	A1TS	POPTR_0015s08400	POPTR_0015s08400 (11)	scaffold_15:9667299-9667387(+) (11)	POPTR_0015s08410 (7)//POPTR_0012s07900 (7)//POPTR_0012s07910 (6)	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50850.1	"BAH domain containing protein, putative, expressed"	Medtr4g149410.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.212763.1.S1_x_at	A	A1TS	POPTR_0015s08410	POPTR_0015s08410 (11)	scaffold_15:9688109-9688312(+) (11)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50840.2	"BAH domain containing protein, putative, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.212765.1.S1_at	A	A1TS	POPTR_0015s08480	POPTR_0015s08480 (11)	scaffold_15:9747027-9747971(+) (11)	NA	O48788	Probable inactive receptor kinase At2g26730	AT2G26730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g20970.1	"receptor kinase, putative"	Medtr1g140560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.212766.1.S1_at	A	A1TS	POPTR_0015s08500	POPTR_0015s08500 (11)	scaffold_15:9764109-9764656(+) (11)	NA	Q7XM31	Probable RNA-dependent RNA polymerase 2	AT4G11130.1	RNA-dependent RNA polymerase 2 	LOC_Os04g39160.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125360.1	RNA-binding region RNP-1 (RNA recognition motif); RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212767.1.S1_at	A	A1TS	POPTR_0015s08530	POPTR_0015s08530 (11)	scaffold_15:9790955-9791394(-) (11)	NA	Q9LRA7	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9"	AT1G23870.1	trehalose-phosphatase/synthase 9 	LOC_Os08g31980.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g110050.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.212768.1.S1_at	A	A1TS	POPTR_0015s08560	POPTR_0015s08560 (11)	scaffold_15:9861005-9862359(+) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT5G62850.1	Nodulin MtN3 family protein 	LOC_Os01g42090.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g109190.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212769.1.S1_at	A	A1TS	POPTR_0015s08580	POPTR_0015s08580 (11)	scaffold_15:9873013-9873233(-) (11)	NA	NA	NA	AT4G20970.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01870.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g017430.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.212770.1.S1_at	A	A1TS	POPTR_0015s08620	POPTR_0015s08620 (11)	scaffold_15:9935563-9937457(+) (11)	NA	Q93YW0	"Protein EXECUTER 1, chloroplastic"	AT1G27510.1	Protein of unknown function (DUF3506) 	LOC_Os01g01790.1	expressed protein	Medtr3g113590.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212771.1.S1_at	A	A1TS	POPTR_0015s08680	POPTR_0015s08680 (11)	scaffold_15:9986477-9986769(+) (11)	NA	Q9SEI0	Transcription factor WER	AT5G14750.1	myb domain protein 66 	LOC_Os09g36730.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212771.1.S1_x_at	A	A1TS	POPTR_0015s08680	POPTR_0015s08680 (11)	scaffold_15:9986511-9987213(+) (11)	NA	Q9SEI0	Transcription factor WER	AT5G14750.1	myb domain protein 66 	LOC_Os09g36730.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212772.1.S1_at	A	A1TS	POPTR_0015s08690	POPTR_0015s08690 (11)	scaffold_15:9990381-9990957(-) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT1G48120.1	hydrolases;protein serine/threonine phosphatases 	LOC_Os08g13970.1	"transposon protein, putative, unclassified"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212773.1.S1_at	A	A1TS	POPTR_0015s08695	POPTR_0015s08695 (11)	scaffold_15:10013521-10013710(+) (11)	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g29960.1	"retrotransposon protein, putative, unclassified"	Medtr8g044140.1	"Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212774.1.S1_at	A	A1TS	POPTR_0015s08700	POPTR_0015s08700 (11)	scaffold_15:10020723-10021310(+) (11)	NA	Q9SEI0	Transcription factor WER	AT5G14750.1	myb domain protein 66 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212775.1.S1_at	A	A1TS	POPTR_0015s08730	POPTR_0015s08730 (10)	scaffold_15:10061817-10064026(+) (10)	NA	NA	NA	AT5G62810.1	peroxin 14 	LOC_Os01g01720.2	"pex14, putative, expressed"	Medtr8g125610.1	Peroxisomal membrane anchor protein (Pex14p) 	NA	NA	GO:0005777|peroxisome||GO:0016020|membrane
PtpAffx.212776.1.S1_at	A	A1TS	POPTR_0015s08760	POPTR_0015s08760 (11)	scaffold_15:10093163-10093858(-) (11)	NA	NA	NA	AT5G62520.1	similar to RCD one 5 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr3g113780.1	"PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212777.1.S1_at	A	A1TS	POPTR_0015s08770	POPTR_0015s08770 (11)	scaffold_15:10101083-10101991(-) (11)	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT3G48190.1	ataxia-telangiectasia mutated 	LOC_Os01g01689.3	"phosphatidylinositol 3- and 4-kinase family protein, expressed"	Medtr3g113790.1	"PIK-related kinase, FATC; "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.212778.1.S1_at	A	A1TS	POPTR_0015s08780	POPTR_0015s08780 (11)	scaffold_15:10110273-10111639(-) (11)	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT3G48190.1	ataxia-telangiectasia mutated 	LOC_Os01g01689.1	"phosphatidylinositol 3- and 4-kinase family protein, expressed"	Medtr3g113790.1	"PIK-related kinase, FATC; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212779.1.S1_at	A	A1TS	POPTR_0015s08870	POPTR_0015s08870 (11)	scaffold_15:10243996-10245004(+) (11)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212779.1.S1_s_at	A	A1TS	POPTR_0015s08870	POPTR_0015s08870 (11)	scaffold_15:10244444-10245185(+) (11)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212780.1.S1_at	A	A1TS	POPTR_0015s08880	POPTR_0015s08880 (11)	scaffold_15:10251718-10252466(+) (11)	NA	Q9S7L2	Transcription factor MYB98	AT4G18770.1	myb domain protein 98 	LOC_Os06g06740.1	"MYB family transcription factor, putative, expressed"	Medtr3g114110.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212781.1.S1_at	A	A1TS	POPTR_0015s08890	POPTR_0015s08890 (9)	scaffold_15:10254062-10254554(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.212782.1.S1_at	A	A1TS	POPTR_0015s08930	POPTR_0015s08930 (10)	scaffold_15:10281269-10282963(+) (10)	NA	NA	NA	AT5G62960.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g03790.1	expressed protein	Medtr3g114140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212783.1.S1_at	A	A1TS	POPTR_0015s08940	POPTR_0015s08940 (11)	scaffold_15:10287908-10289216(-) (11)	NA	Q08AW4	Pleckstrin homology domain-containing family M member 3	AT3G48195.1	Phox (PX) domain-containing protein 	LOC_Os01g36870.1	"phox domain-containing protein, putative, expressed"	Medtr3g114150.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.212783.1.S1_x_at	A	A1TS	POPTR_0015s08940	POPTR_0015s08940 (11)	scaffold_15:10287845-10289216(-) (11)	NA	Q08AW4	Pleckstrin homology domain-containing family M member 3	AT3G48195.1	Phox (PX) domain-containing protein 	LOC_Os01g36870.1	"phox domain-containing protein, putative, expressed"	Medtr3g114150.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.212784.1.S1_at	A	A1TS	POPTR_0015s08950	POPTR_0015s08950 (11)	scaffold_15:10304383-10304807(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212785.1.S1_at	A	A1TS	POPTR_0015s08960	POPTR_0015s08960 (11)	scaffold_15:10311800-10311860(+) (11)	NA	O00566	U3 small nucleolar ribonucleoprotein protein MPP10	AT5G66540.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os11g04200.1	"M phase phosphoprotein 10, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212785.1.S1_x_at	A	A1TS	POPTR_0015s08960	POPTR_0015s08960 (11)	scaffold_15:10310883-10311860(+) (11)	NA	O00566	U3 small nucleolar ribonucleoprotein protein MPP10	AT5G66540.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os11g04200.1	"M phase phosphoprotein 10, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212787.1.S1_at	A	A1TS	POPTR_0015s09020	POPTR_0015s09020 (11)	scaffold_15:10343733-10344010(-) (11)	NA	NA	NA	AT3G48200.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os05g51620.1	expressed protein	Medtr3g114250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212787.1.S1_s_at	A	A1TS	POPTR_0015s09020	POPTR_0015s09020 (11)	scaffold_15:10344047-10345184(-) (11)	NA	NA	NA	AT3G48200.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os05g51620.1	expressed protein	Medtr3g114250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212788.1.S1_at	A	A1TS	POPTR_0015s09060	POPTR_0015s09060 (11)	scaffold_15:10382794-10383352(+) (11)	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.1	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os06g36770.1	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212789.1.S1_at	A	A1TS	POPTR_0015s09070	POPTR_0015s09070 (11)	scaffold_15:10393726-10394084(+) (11)	NA	Q14149	MORC family CW-type zinc finger protein 3	AT1G19100.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os01g36840.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	NA	GO:0005524|ATP binding	NA
PtpAffx.212789.1.S1_s_at	A	A1TS	POPTR_0015s09070	POPTR_0015s09070 (11)	scaffold_15:10394091-10394863(+) (10)	NA	Q14149	MORC family CW-type zinc finger protein 3	AT1G19100.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os01g36840.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	NA	GO:0005524|ATP binding	NA
PtpAffx.212790.1.S1_at	A	A1TS	POPTR_0015s09090	POPTR_0015s09090 (11)	scaffold_15:10410271-10414385(+) (11)	NA	P47140	Altered inheritance rate of mitochondria protein 25	AT2G04940.1	scramblase-related 	LOC_Os04g51080.1	"scramblase, putative, expressed"	Medtr4g106810.1	Scramblase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212791.1.S1_at	A	A1TS	POPTR_0015s09140	POPTR_0015s09140 (11)	scaffold_15:10448052-10449209(+) (11)	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT4G19180.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os10g21000.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g025310.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.212792.1.S1_at	A	A1TS	POPTR_0015s09180	POPTR_0015s09180 (11)	scaffold_15:10461126-10461793(-) (11)	NA	Q6GQ69	FAS-associated factor 2-B	AT4G10790.1	UBX domain-containing protein 	LOC_Os09g30411.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212793.1.S1_at	A	A1TS	POPTR_0015s09200	POPTR_0015s09200 (11)	scaffold_15:10471800-10473343(-) (11)	NA	Q08BY5	JmjC domain-containing protein 4	AT5G63080.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g36630.1	"jmjC domain-containing protein 4, putative, expressed"	Medtr3g114430.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212794.1.S1_at	A	A1TS	POPTR_0015s09230	POPTR_0015s09230 (11)	scaffold_15:10484868-10485442(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212795.1.S1_at	A	A1TS	POPTR_0015s09250	POPTR_0015s09250 (11)	scaffold_15:10500253-10500492(+) (11)	NA	NA	NA	AT3G48210.1	"CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os05g02000.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212795.1.S1_s_at	A	A1TS	POPTR_0015s09250	POPTR_0015s09250 (11)	scaffold_15:10498186-10500261(+) (11)	NA	NA	NA	AT3G48210.1	"CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os05g02000.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212796.1.S1_at	A	A1TS	POPTR_0015s09260	POPTR_0015s09260 (11)	scaffold_15:10502678-10503751(-) (11)	NA	P59837	Retinol dehydrogenase 12	AT5G50130.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g03830.1	"retinol dehydrogenase, putative, expressed"	Medtr3g114440.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.212797.1.S1_at	A	A1TS	POPTR_0015s09280	POPTR_0015s09280 (11)	scaffold_15:10513150-10513822(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212798.1.S1_s_at	A	A1TS	POPTR_0015s09300	POPTR_0015s09300 (11)	scaffold_15:10535212-10535977(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212799.1.S1_at	A	A1TS	POPTR_0015s09330	POPTR_0015s09330 (11)	scaffold_15:10551062-10551567(+) (11)	NA	Q8VWN6	Galactinol--sucrose galactosyltransferase	AT5G40390.1	Raffinose synthase family protein 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr3g114540.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2128.1.A1_x_at	A	A1TS	POPTR_0018s11660	POPTR_0018s11660 (11)	scaffold_18:12301972-12302158(-) (11)	NA	Q9AXJ4	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
PtpAffx.212801.1.S1_at	A	A1TS	POPTR_0015s09360	POPTR_0015s09360 (11)	scaffold_15:10577771-10578053(-) (11)	NA	Q9SS98	Oleosin 5	AT3G01570.1	Oleosin family protein 	LOC_Os03g49190.1	"oleosin, putative, expressed"	Medtr6g005060.1	Oleosin 	NA	NA	GO:0043231|intracellular membrane-bounded organelle||GO:0016021|integral to membrane||GO:0012511|monolayer-surrounded lipid storage body
PtpAffx.212804.1.S1_at	A	A1TS	POPTR_0015s09390	POPTR_0015s09390 (10)	scaffold_15:10617409-10617947(-) (11)	NA	Q9C7V5	Putative pentatricopeptide repeat-containing protein At1g64310	AT1G64310.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g36540.1	"pentatricopeptide, putative"	Medtr3g114590.1	Ribosomal protein L11; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212805.1.S1_at	A	A1TS	POPTR_0015s09440	POPTR_0015s09440 (11)	scaffold_15:10659381-10659924(-) (11)	NA	NA	NA	AT3G26600.1	armadillo repeat only 4 	LOC_Os09g36550.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g034510.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212806.1.S1_at	A	A1TS	POPTR_0015s09450	POPTR_0015s09450 (11)	scaffold_15:10663960-10665087(-) (11)	NA	Q07123	Copper methylamine oxidase	AT2G42490.1	Copper amine oxidase family protein 	LOC_Os04g40040.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr3g114690.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.212806.1.S1_x_at	A	A1TS	POPTR_0015s09450	POPTR_0015s09450 (11)	scaffold_15:10663499-10665087(-) (11)	NA	Q07123	Copper methylamine oxidase	AT2G42490.1	Copper amine oxidase family protein 	LOC_Os04g40040.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr3g114690.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.212807.1.S1_at	A	A1TS	POPTR_0015s09460	POPTR_0015s09460 (11)	scaffold_15:10684748-10684791(-) (11)	NA	Q5N7W4	DEAD-box ATP-dependent RNA helicase 30	AT5G63120.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g68320.2	"DEAD-box ATP-dependent RNA helicase 30, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.212807.1.S1_x_at	A	A1TS	POPTR_0015s09460	POPTR_0015s09460 (11)	scaffold_15:10684739-10684836(-) (11)	NA	Q5N7W4	DEAD-box ATP-dependent RNA helicase 30	AT5G63120.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g68320.2	"DEAD-box ATP-dependent RNA helicase 30, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.212808.1.S1_at	A	A1TS	POPTR_0015s09520	POPTR_0015s09520 (11)	scaffold_15:10728058-10728362(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212809.1.S1_at	A	A1TS	POPTR_0015s09540	POPTR_0015s09540 (11)	scaffold_15:10738436-10738958(+) (11)	NA	O61967	Protein lap1	AT3G11330.1	plant intracellular ras group-related LRR 9 	LOC_Os04g40080.1	"leucine rich repeat containing protein, expressed"	Medtr3g114800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.212809.1.S1_s_at	A	A1TS	POPTR_0015s09540	POPTR_0015s09540 (11)	scaffold_15:10738475-10738975(+) (11)	NA	O61967	Protein lap1	AT3G11330.1	plant intracellular ras group-related LRR 9 	LOC_Os04g40080.1	"leucine rich repeat containing protein, expressed"	Medtr3g114800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.212810.1.S1_at	A	A1TS	POPTR_0015s09590	POPTR_0015s09590 (11)	scaffold_15:10763198-10764497(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g68130.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212811.1.S1_at	A	A1TS	POPTR_0015s09600	POPTR_0015s09600 (11)	scaffold_15:10765567-10766080(-) (11)	NA	NA	NA	AT4G12690.2	Plant protein of unknown function (DUF868) 	LOC_Os01g68140.1	expressed protein	Medtr3g115140.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212812.1.S1_at	A	A1TS	POPTR_0015s09610	POPTR_0015s09610 (10)	scaffold_15:10782661-10783165(+) (10)	NA	Q65X23	Probable serine/threonine-protein kinase WNK2	AT3G48260.1	with no lysine (K) kinase 3 	LOC_Os05g01780.1	"STE_PAK_Ste20++TranslationKinase_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g115110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212814.1.S1_at	A	A1TS	POPTR_0015s09640	POPTR_0015s09640 (11)	scaffold_15:10815969-10816559(+) (11)	NA	Q9STK5	"Pentatricopeptide repeat-containing protein At3g48250, chloroplastic"	AT3G48250.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g73950.2	"PPR repeat containing protein, expressed"	Medtr5g099370.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212814.1.S1_s_at	A	A1TS	POPTR_0015s09640	POPTR_0015s09640 (11)	scaffold_15:10816018-10816495(+) (11)	NA	Q9STK5	"Pentatricopeptide repeat-containing protein At3g48250, chloroplastic"	AT3G48250.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g73950.2	"PPR repeat containing protein, expressed"	Medtr5g099370.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212815.1.S1_at	A	A1TS	POPTR_0015s09680	POPTR_0015s09680 (11)	scaffold_15:10831812-10832376(-) (11)	NA	A7YY53	Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase	AT4G24730.3	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os07g48840.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr3g115170.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.212816.1.S1_s_at	A	A1TS	POPTR_0015s09690	POPTR_0015s09690 (11)	scaffold_15:10835703-10836763(-) (11)	NA	Q84W65	"SufE-like protein, chloroplastic"	AT5G50210.1	quinolinate synthase 	LOC_Os12g19304.2	"Fe-S metabolism associated domain containing protein, expressed"	Medtr3g102410.1	Fe-S metabolism associated SufE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212817.1.S1_at	A	A1TS	POPTR_0015s09700	POPTR_0015s09700 (11)	scaffold_15:10850843-10851356(+) (11)	NA	Q9FZB1	Probable LRR receptor-like serine/threonine-protein kinase At1g51880	AT2G33580.1	Protein kinase superfamily protein 	LOC_Os02g09960.1	"LYK8, putative, expressed"	AC233683_19.1	Peptidoglycan-binding LysM; Protein kinase-like AC233683.2 109087-110898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212818.1.S1_at	A	A1TS	POPTR_0015s09710	POPTR_0015s09710 (11)	scaffold_15:10855922-10856990(+) (11)	NA	Q43714	(+)-delta-cadinene synthase isozyme A	AT5G23960.2	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.212818.1.S1_s_at	A	A2TS	POPTR_0015s05270	POPTR_0015s09710 (11)//POPTR_0015s05270 (11)	scaffold_15:5643151-5643916(+) (11)//scaffold_15:10856064-10856880(+) (11)	NA	Q43714	(+)-delta-cadinene synthase isozyme A	AT5G23960.2	terpene synthase 21 	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.212819.1.S1_at	A	A1TS	POPTR_0015s09720	POPTR_0015s09720 (11)	scaffold_15:10861019-10861603(-) (11)	NA	P24465	Cytochrome P450 71A1	AT3G48280.1	"cytochrome P450, family 71, subfamily A, polypeptide 25 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.212820.1.S1_at	A	A1TS	POPTR_0015s09750	POPTR_0015s09750 (11)	scaffold_15:10881015-10881223(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212821.1.S1_at	A	A1TS	POPTR_0015s09770	POPTR_0015s09770 (11)	scaffold_15:10898065-10898592(-) (11)	NA	NA	NA	AT4G24750.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os02g38240.1	"rhodanese family protein, putative, expressed"	AC235756_2.1	Rhodanese-like AC235756.1 14706-16792 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212822.1.S1_at	A	A1TS	POPTR_0015s09790	POPTR_0015s09790 (11)	scaffold_15:10909676-10910021(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g032690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212823.1.S1_at	A	A1TS	POPTR_0015s09840	POPTR_0015s09840 (11)	scaffold_15:10935875-10936395(-) (11)	NA	Q9FMY1	Cytochrome P450 86B1	AT2G23180.1	"cytochrome P450, family 96, subfamily A, polypeptide 1 "	LOC_Os01g08810.1	"cytochrome P450, putative, expressed"	Medtr4g137010.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.212825.1.S1_at	A	A1TS	POPTR_0015s09940	POPTR_0015s09940 (11)	scaffold_15:11013967-11015299(+) (11)	NA	Q9SSE8	Probable glycosyltransferase At3g07620	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr5g032910.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.212826.1.S1_at	A	A1TS	POPTR_0015s09950	POPTR_0015s09950 (11)	scaffold_15:11024858-11026034(+) (11)	NA	P09122	DNA polymerase III subunit gamma/tau	AT4G24790.2	AAA-type ATPase family protein 	LOC_Os12g19180.1	"ATP binding protein, putative, expressed"	Medtr8g110070.1	"AAA ATPase; DNA polymerase III clamp loader subunit, C-terminal "	NA	GO:0005524|ATP binding	NA
PtpAffx.212828.1.S1_at	A	A1TS	POPTR_0015s10000	POPTR_0015s10000 (11)	scaffold_15:11059321-11060395(+) (11)	NA	Q9LW07	Probable polygalacturonase At3g15720	AT5G39910.1	Pectin lyase-like superfamily protein 	LOC_Os01g19170.1	"polygalacturonase, putative, expressed"	Medtr4g114520.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.212829.1.S1_at	A	A1TS	POPTR_0015s10020	POPTR_0015s10020 (10)	scaffold_15:11067254-11067783(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr4g129520.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212830.1.S1_at	A	A1TS	POPTR_0015s10030	POPTR_0015s10030 (11)	scaffold_15:11071031-11074067(+) (11)	NA	P51173	DNA-(apurinic or apyrimidinic site) lyase	AT3G48425.1	DNAse I-like superfamily protein 	LOC_Os12g18200.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC235753_14.2	N-6 Adenine-specific DNA methylase; Exodeoxyribonuclease III xth AC235753.1 83675-77442 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212831.1.S1_at	A	A1TS	POPTR_0015s10040	POPTR_0015s10040 (9)	scaffold_15:11085698-11086243(+) (11)	POPTR_0012s09390 (7)	Q3UXZ9	Lysine-specific demethylase 5A	AT3G48430.1	relative of early flowering 6 	LOC_Os01g67970.1	"ZOS1-20 - C2H2 zinc finger protein, expressed"	AC235753_2.1	"Transcription factor jumonji, jmjC; Zinc finger, C2H2-type; ; AC235753.1 4557-10832 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.212832.1.S1_s_at	A	A1TS	POPTR_0015s10040	POPTR_0015s10040 (11)	scaffold_15:11094054-11094553(+) (11)	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT3G48430.1	relative of early flowering 6 	LOC_Os01g67970.1	"ZOS1-20 - C2H2 zinc finger protein, expressed"	AC235753_2.1	"Transcription factor jumonji, jmjC; Zinc finger, C2H2-type; ; AC235753.1 4557-10832 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.212833.1.S1_at	A	A2TS	POPTR_0015s10120	POPTR_0015s10120 (11)//POPTR_0015s10090 (9)	scaffold_15:11141259-11153735(-) (11)//scaffold_15:11152266-11154337(-) (9)	NA	Q9SJM0	Callose synthase 10	AT2G36850.1	glucan synthase-like 8 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr1g146740.1	"Callose synthase catalytic subunit, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212835.1.S1_at	A	A1TS	POPTR_0015s10150	POPTR_0015s10150 (11)	scaffold_15:11168996-11170095(-) (11)	NA	NA	NA	AT1G24440.1	RING/U-box superfamily protein 	LOC_Os07g17400.2	"zinc finger, RING-type, putative, expressed"	Medtr3g102930.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212836.1.S1_at	A	A1TS	POPTR_0015s10160	POPTR_0015s10160 (11)	scaffold_15:11173435-11173948(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212837.1.S1_at	A	A1TS	POPTR_0015s10170	POPTR_0015s10170 (11)	scaffold_15:11176449-11176901(-) (11)	NA	Q84MA8	Adenine/guanine permease AZG2	AT5G50300.1	Xanthine/uracil permease family protein 	LOC_Os11g24060.1	"permease domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212838.1.S1_at	A	A1TS	POPTR_0015s10180	POPTR_0015s10180 (11)	scaffold_15:11184798-11185767(-) (11)	NA	Q921I2	Kelch domain-containing protein 4	AT5G50310.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g40740.1	"kelch repeat protein, putative, expressed"	Medtr2g025020.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212839.1.S1_at	A	A1TS	POPTR_0015s10200	POPTR_0015s10200 (11)	scaffold_15:11204051-11205361(+) (11)	NA	NA	NA	AT5G63280.1	C2H2-like zinc finger protein 	LOC_Os12g13130.4	"ZOS12-03 - C2H2 zinc finger protein, expressed"	Medtr8g109960.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212840.1.S1_at	A	A1MS	POPTR_0015s10210	POPTR_0015s10210 (11)	scaffold_15:11207029-11207629(-) (11)	NA	P73245	Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917	AT5G63290.1	Radical SAM superfamily protein 	LOC_Os12g17070.2	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.212841.1.S1_at	A	A1TS	POPTR_0015s10220	POPTR_0015s10220 (11)	scaffold_15:11208917-11210096(-) (11)	NA	Q93ZR1	Elongator complex protein 3	AT5G50320.1	radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein 	LOC_Os04g40840.1	"elongator complex protein 3, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.212842.1.S1_at	A	A1TS	POPTR_0015s10230	POPTR_0015s10230 (11)	scaffold_15:11220964-11221382(+) (11)	NA	O74113	Cell division control protein 45 homolog	AT3G25100.1	cell division cycle 45 	LOC_Os11g03430.1	"CDC45B - Putative DNA replication initiation protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006270|DNA replication initiation	NA	NA
PtpAffx.212843.1.S1_at	A	A1TS	POPTR_0015s10240	POPTR_0015s10240 (10)	scaffold_15:11225403-11227468(+) (11)	NA	Q9DC40	Telomere length regulation protein TEL2 homolog	AT3G48470.1	embryo defective 2423 	LOC_Os02g38680.1	"EMB2423, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212844.1.S1_at	A	A1TS	POPTR_0015s10250	POPTR_0015s10250 (11)	scaffold_15:11232739-11233446(-) (11)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT3G48480.1	Cysteine proteinases superfamily protein 	LOC_Os11g10780.1	expressed protein	Medtr3g149330.2	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212845.1.S1_at	A	A1TS	POPTR_0015s10290	POPTR_0015s10290 (11)	scaffold_15:11251555-11251903(+) (11)	NA	Q86TW2	Uncharacterized aarF domain-containing protein kinase 1	AT5G50330.1	Protein kinase superfamily protein 	LOC_Os01g67720.1	"ABC1 family domain containing protein, putative, expressed"	Medtr8g109830.1	"Protein kinase; Cytochrome c, monohaem "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212846.1.S1_at	A	A1TS	POPTR_0015s10310	POPTR_0015s10310 (11)	scaffold_15:11260424-11260918(-) (11)	NA	Q9C8Y3	DELLA protein RGL1	AT1G66350.1	RGA-like 1 	LOC_Os01g67650.1	"gibberellin response modulator protein, putative"	Medtr8g109760.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212847.1.S1_at	A	A1TS	POPTR_0015s10310	POPTR_0015s10310 (11)	scaffold_15:11261367-11261768(-) (11)	NA	Q9C8Y3	DELLA protein RGL1	AT1G66350.1	RGA-like 1 	LOC_Os01g67650.1	"gibberellin response modulator protein, putative"	Medtr8g109760.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212848.1.S1_at	A	A1TS	POPTR_0015s10320	POPTR_0015s10320 (11)	scaffold_15:11270852-11271278(-) (11)	NA	NA	NA	AT5G50335.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212849.1.S1_at	A	A1TS	POPTR_0015s10340	POPTR_0015s10340 (11)	scaffold_15:11300584-11301208(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g40740.1	expressed protein	Medtr8g047880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212850.1.S1_at	A	A1TS	POPTR_0015s10350	POPTR_0015s10350 (11)	scaffold_15:11310433-11311453(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.2	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212851.1.S1_at	A	A1TS	POPTR_0015s10370	POPTR_0015s10370 (11)	scaffold_15:11320300-11321058(-) (11)	NA	NA	NA	AT3G01770.1	bromodomain and extraterminal domain protein 10 	LOC_Os08g03360.1	"ATBET9, putative, expressed"	Medtr2g021880.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212853.1.S1_at	A	A1TS	POPTR_0015s10410	POPTR_0015s10410 (11)	scaffold_15:11355654-11356151(+) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212855.1.S1_at	A	A1TS	POPTR_0015s10440	POPTR_0015s10440 (11)	scaffold_15:11379996-11382303(+) (11)	NA	Q58D06	WD repeat-containing protein 74	AT1G29320.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g32350.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212856.1.S1_at	A	A1TS	POPTR_0015s10450	POPTR_0015s10450 (11)	scaffold_15:11383843-11384610(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212857.1.S1_at	A	A1TS	POPTR_0015s10470	POPTR_0015s10470 (11)	scaffold_15:11387647-11388450(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G63390.1	O-fucosyltransferase family protein 	LOC_Os12g08820.2	"growth regulator related protein, putative, expressed"	Medtr3g031560.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212858.1.S1_s_at	A	A1TS	POPTR_0015s10500	POPTR_0015s10500 (11)	scaffold_15:11403332-11404547(-) (11)	NA	O94514	Nucleolar protein 56	AT1G56110.1	homolog of nucleolar protein NOP56 	LOC_Os03g22880.1	"nucleolar protein 5A, putative, expressed"	Medtr8g109560.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOP5, N-terminal; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212858.1.S1_x_at	A	A1TS	POPTR_0015s10500	POPTR_0015s10500 (11)	scaffold_15:11403396-11404626(-) (11)	NA	O94514	Nucleolar protein 56	AT1G56110.1	homolog of nucleolar protein NOP56 	LOC_Os03g22880.1	"nucleolar protein 5A, putative, expressed"	Medtr8g109560.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOP5, N-terminal; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212859.1.S1_at	A	A1TS	POPTR_0015s10510	POPTR_0015s10510 (10)	scaffold_15:11410555-11412106(+) (11)	NA	Q08B22	Asparagine-linked glycosylation protein 11 homolog	AT2G40190.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os12g39340.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC235758_13.1	"Glycosyl transferase, group 1 AC235758.1 63451-61484 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212860.1.S1_s_at	A	A1TS	POPTR_0015s10520	POPTR_0015s10520 (11)	scaffold_15:11421009-11422279(+) (11)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT5G14210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g20360.2	expressed protein	Medtr3g117370.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.212861.1.S1_at	A	A1TS	POPTR_0015s10540	POPTR_0015s10540 (11)	scaffold_15:11429031-11430314(-) (11)	NA	Q3SZD4	WD repeat-containing protein 18	AT3G49180.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g22534.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g109510.1	transducin family protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212862.1.S1_at	A	A1TS	POPTR_0015s10550	POPTR_0015s10550 (9)	scaffold_15:11443650-11443718(-) (9)	NA	A2YBX5	Protein kinase G11A	AT2G26700.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g07940.1	"AGC_PVPK_like_kin82y.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g119560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212862.1.S1_s_at	A	A1TS	POPTR_0015s10550	POPTR_0015s10550 (11)	scaffold_15:11443137-11443647(-) (11)	NA	A2YBX5	Protein kinase G11A	AT2G26700.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g07940.1	"AGC_PVPK_like_kin82y.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g119560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.212863.1.S1_at	A	A1TS	POPTR_0015s10570	POPTR_0015s10570 (10)	scaffold_15:11458666-11458902(+) (11)	NA	P54122	Ribonuclease J	AT5G63420.1	RNA-metabolising metallo-beta-lactamase family protein 	LOC_Os02g33610.1	"metallo-beta-lactamase, putative, expressed"	Medtr3g117450.1	"Myb, DNA-binding; Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212864.1.S1_at	A	A1TS	POPTR_0015s10570	POPTR_0015s10570 (11)	scaffold_15:11465015-11465295(+) (11)	NA	P54122	Ribonuclease J	AT5G63420.1	RNA-metabolising metallo-beta-lactamase family protein 	LOC_Os02g33610.1	"metallo-beta-lactamase, putative, expressed"	Medtr3g117450.1	"Myb, DNA-binding; Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212866.1.S1_at	A	A1TS	POPTR_0015s10600	POPTR_0015s10600 (11)	scaffold_15:11472950-11474315(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212867.1.S1_at	A	A1MS	POPTR_0015s10620	POPTR_0015s10620 (10)	scaffold_15:11490996-11491871(-) (11)	NA	Q9QYY8	Spastin	AT4G02480.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g117540.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.212868.1.S1_a_at	A	A1MS	POPTR_0015s10620	POPTR_0015s10620 (11)	scaffold_15:11493286-11493348(-) (11)//scaffold_15:11493355-11493417(-) (11)	NA	Q9QYY8	Spastin	AT4G02480.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g117540.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.212868.1.S1_at	A	A1MS	POPTR_0015s10620	POPTR_0015s10620 (10)	scaffold_15:11493241-11493989(-) (10)	NA	Q9QYY8	Spastin	AT4G02480.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g117540.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.212869.1.S1_at	A	A1TS	POPTR_0015s10660	POPTR_0015s10660 (11)	scaffold_15:11527180-11527592(+) (11)	NA	Q9FMT4	SWI/SNF complex component SNF12 homolog	AT5G14170.1	SWIB/MDM2 domain superfamily protein 	LOC_Os04g31320.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr8g109310.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212870.1.S1_at	A	A1TS	POPTR_0015s10730	POPTR_0015s10730 (11)	scaffold_15:11565276-11566007(-) (11)	NA	Q9XE58	Scarecrow-like protein 14	AT1G07530.1	SCARECROW-like 14 	LOC_Os04g50060.2	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g083840.1	Site-specific DNA-methyltransferase (cytosine-N4-specific); GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212871.1.S1_at	A	A1TS	POPTR_0015s10770	POPTR_0015s10770 (11)	scaffold_15:11588550-11590074(+) (11)	NA	Q8L9A0	"50S ribosomal protein L21, mitochondrial"	AT4G30930.1	Ribosomal protein L21 	LOC_Os05g48410.1	"50S ribosomal protein L21, chloroplast precursor, putative, expressed"	AC235094_7.1	Ribosomal protein L21 AC235094.1 33114-37272 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.212872.1.S1_s_at	A	A1TS	POPTR_0015s10790	POPTR_0015s10790 (11)	scaffold_15:11595691-11596431(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os08g41880.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g109230.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.212873.1.S1_at	A	A1TS	POPTR_0015s10810	POPTR_0015s10810 (11)	scaffold_15:11607353-11608317(-) (11)	NA	Q9BRS2	Serine/threonine-protein kinase RIO1	AT5G37350.1	Serine/threonine-protein kinase Rio1 	LOC_Os07g06820.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr7g107800.1	"Tyrosine protein kinase, active site "	NA	GO:0003824|catalytic activity||GO:0005524|ATP binding	NA
PtpAffx.212874.1.S1_at	A	A1TS	POPTR_0015s10820	POPTR_0015s10820 (11)	scaffold_15:11617561-11617826(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.212875.1.S1_at	A	A1TS	POPTR_0015s10870	POPTR_0015s10870 (11)	scaffold_15:11649387-11650863(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212876.1.S1_at	A	A1TS	POPTR_0015s10880	POPTR_0015s10880 (11)	scaffold_15:11653944-11654730(+) (11)	NA	NA	NA	AT4G24900.1	unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os09g32940.1	expressed protein	Medtr3g150550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212877.1.S1_at	A	A1TS	POPTR_0015s10890	POPTR_0015s10890 (11)	scaffold_15:11656133-11656438(-) (11)	NA	NA	NA	AT4G24910.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g103910.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212878.1.S1_at	A	A1TS	POPTR_0015s10900	POPTR_0015s10900 (11)	scaffold_15:11663104-11663624(+) (11)	NA	NA	NA	AT4G37100.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os11g29630.1	expressed protein	Medtr3g150560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212879.1.S1_at	A	A1TS	POPTR_0015s10910	POPTR_0015s10910 (11)	scaffold_15:11664115-11664810(-) (11)	NA	P09342	"Acetolactate synthase 1, chloroplastic"	AT3G48560.1	chlorsulfuron/imidazolinone resistant 1 	LOC_Os02g30630.2	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr2g014800.1	"Thiamine pyrophosphate enzyme, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212880.1.S1_at	A	A1TS	POPTR_0015s10950	POPTR_0015s10950 (11)	scaffold_15:11688898-11689337(-) (11)	NA	Q7ZXQ8	DnaJ homolog subfamily B member 14	AT5G53150.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os04g31940.1	"dnaJ domain containing protein, expressed"	Medtr3g124470.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.212881.1.S1_at	A	A1TS	POPTR_0015s10960	POPTR_0015s10960 (10)	scaffold_15:11695947-11696725(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr3g150640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212881.1.S1_x_at	A	A1TS	POPTR_0015s10960	POPTR_0015s10960 (10)	scaffold_15:11695947-11696571(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr3g150640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212882.1.S1_s_at	A	A1TS	POPTR_0015s10970	POPTR_0015s10970 (11)	scaffold_15:11697471-11698666(+) (11)	NA	NA	NA	AT5G63480.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g31910.1	expressed protein	Medtr3g150660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212883.1.S1_at	A	A1TS	POPTR_0015s10990	POPTR_0015s10990 (11)	scaffold_15:11704353-11705761(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212884.1.S1_at	A	A1TS	POPTR_0015s11010	POPTR_0015s11010 (11)	scaffold_15:11717611-11717815(+) (11)	NA	NA	NA	AT3G27030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g30360.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212885.1.S1_at	A	A1TS	POPTR_0015s11050	POPTR_0015s11050 (11)	scaffold_15:11736503-11736766(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212886.1.S1_at	A	A1TS	POPTR_0015s11090	POPTR_0015s11090 (11)	scaffold_15:11759389-11760073(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212887.1.S1_at	A	A1TS	POPTR_0015s11120	POPTR_0015s11120 (9)	scaffold_15:11783952-11784500(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212888.1.S1_at	A	A1TS	POPTR_0015s11150	POPTR_0015s11150 (11)	scaffold_15:11792220-11792791(-) (11)	NA	NA	NA	AT5G13090.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g29810.1	conserved hypothetical protein	Medtr2g029450.1	"protein F12F1.11 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212889.1.S1_at	A	A1TS	POPTR_0015s11160	POPTR_0015s11160 (11)	scaffold_15:11805547-11806592(+) (11)	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os02g30650.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150810.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.212889.1.S1_x_at	A	A1TS	POPTR_0015s11160	POPTR_0015s11160 (11)	scaffold_15:11805547-11806654(+) (11)	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os02g30650.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150810.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.212890.1.S1_at	A	A1TS	POPTR_0015s11180	POPTR_0015s11180 (10)	scaffold_15:11827669-11828829(+) (10)	NA	Q9FED2	HVA22-like protein e	AT5G50720.1	HVA22 homologue E 	LOC_Os11g30500.1	"HVA22, putative, expressed"	Medtr3g150830.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212891.1.S1_at	A	A1TS	POPTR_0015s11220	POPTR_0015s11220 (11)	scaffold_15:11848121-11849176(+) (11)	NA	NA	NA	AT5G50700.1	hydroxysteroid dehydrogenase 1 	LOC_Os04g32070.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212892.1.S1_at	A	A1TS	POPTR_0015s11230	POPTR_0015s11230 (11)	scaffold_15:11850231-11852076(-) (11)	NA	A4IF98	RecQ-mediated genome instability protein 1	AT5G63540.1	Domain of unknown function (DUF1767) 	LOC_Os04g32090.1	expressed protein	Medtr1g083690.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212893.1.S1_at	A	A1TS	POPTR_0015s11250	POPTR_0015s11250 (11)	scaffold_15:11863768-11864883(-) (11)	NA	Q8W475	SWI/SNF complex subunit SWI3A	AT2G47620.1	SWITCH/sucrose nonfermenting 3A 	LOC_Os04g40420.1	"SWIRM domain containing protein, expressed"	Medtr3g150840.1	SWIRM; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212894.1.S1_at	A	A1TS	POPTR_0015s11260	POPTR_0015s11260 (11)	scaffold_15:11869060-11869566(+) (11)	NA	Q7M443	Chitinase 2	NA	NA	LOC_Os10g28050.1	"chitinase 2, putative, expressed"	Medtr6g089840.1	"Glycoside hydrolase, chitinase active site; Ribosomal protein S2 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.212895.1.S1_at	A	A1TS	POPTR_0015s11270	POPTR_0015s11270 (11)	scaffold_15:11871557-11872061(+) (11)	NA	Q7M443	Chitinase 2	NA	NA	LOC_Os10g28050.1	"chitinase 2, putative, expressed"	Medtr6g089840.1	"Glycoside hydrolase, chitinase active site; Ribosomal protein S2 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.212897.1.S1_at	A	A1MS	POPTR_0015s11300	POPTR_0015s11300 (9)	scaffold_15:11897597-11898855(+) (11)	NA	Q8BMD7	MORC family CW-type zinc finger protein 4	AT5G50780.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os02g27000.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212897.1.S1_s_at	A	A1TS	POPTR_0015s11300	POPTR_0015s11300 (11)	scaffold_15:11898691-11900073(+) (11)	NA	Q8BMD7	MORC family CW-type zinc finger protein 4	AT5G50780.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os02g27000.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212898.1.S1_at	A	A1TS	POPTR_0015s11310	POPTR_0015s11310 (11)	scaffold_15:11908569-11908870(+) (11)	NA	NA	NA	AT1G32583.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g28750.1	"TPD1, putative, expressed"	Medtr3g150890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212899.1.S1_at	A	A1TS	POPTR_0015s11340	POPTR_0015s11340 (11)	scaffold_15:11927951-11929808(+) (11)	NA	Q0E0Y3	RNA pseudourine synthase 7	AT5G51140.1	Pseudouridine synthase family protein 	LOC_Os02g30840.1	"RNA pseudouridine synthase, putative, expressed"	Medtr3g150910.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.212900.1.S1_at	A	A1TS	POPTR_0015s11350	POPTR_0015s11350 (11)	scaffold_15:11935094-11935950(+) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT5G50790.1	Nodulin MtN3 family protein 	LOC_Os11g31190.1	"nodulin MtN3 family protein, putative, expressed"	Medtr5g076470.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212901.1.S1_at	A	A1TS	POPTR_0015s11360	POPTR_0015s11360 (11)	scaffold_15:11947374-11948287(+) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT5G50790.1	Nodulin MtN3 family protein 	LOC_Os11g31190.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g150920.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212902.1.S1_at	A	A1TS	POPTR_0015s11380	POPTR_0015s11380 (11)	scaffold_15:11963756-11964363(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT5G23660.1	homolog of Medicago truncatula MTN3 	LOC_Os11g31190.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g150940.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212903.1.S1_at	A	A1TS	POPTR_0015s11390	POPTR_0015s11390 (11)	scaffold_15:11970510-11970653(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212905.1.S1_at	A	A2TS	POPTR_0015s11420	POPTR_0015s11420 (11)//POPTR_0101s00200 (9)	scaffold_101:25-652(+) (9)//scaffold_15:11986721-11987676(+) (11)	NA	O49255	NAC domain-containing protein 29	AT5G13180.1	NAC domain containing protein 83 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.212905.1.S1_s_at	A	A2TS	POPTR_0012s10530	POPTR_0012s10530 (11)//POPTR_0015s11420 (11)	scaffold_12:11276968-11277332(+) (11)//scaffold_15:11986788-11987141(+) (11)	NA	O49255	NAC domain-containing protein 29	AT5G13180.1	NAC domain containing protein 83 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.212906.1.S1_s_at	A	A4TS	POPTR_0015s11430	POPTR_0101s00260 (11)//POPTR_0015s11440 (11)//POPTR_0015s11430 (11)//POPTR_0101s00210 (11)	scaffold_101:9059-9187(-) (11)//scaffold_101:43415-43543(-) (11)//scaffold_15:11995337-11995465(-) (11)//scaffold_15:12010090-12010218(-) (11)	NA	NA	NA	AT3G48770.1	DNA binding;ATP binding 	LOC_Os11g31480.1	"ATP binding protein, putative, expressed"	Medtr8g011570.1	"Proteinase inhibitor I3, Kunitz legume; ATP-binding region, ATPase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212907.1.S1_at	A	A1TS	POPTR_0101s00240	POPTR_0101s00240 (11)	scaffold_101:27969-28032(-) (11)	NA	NA	NA	AT3G48770.1	DNA binding;ATP binding 	LOC_Os11g31500.1	"ATP binding protein, putative"	AC233682_17.1	"ATP-binding region, ATPase-like AC233682.2 53559-59969 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212911.1.S1_s_at	A	A4TS	POPTR_0015s11440	POPTR_0015s11440 (11)//POPTR_0101s00270 (11)//POPTR_0015s11430 (10)//POPTR_0101s00220 (10)	scaffold_101:18926-19154(-) (10)//scaffold_101:56951-57179(-) (11)//scaffold_15:11996347-11996575(-) (10)//scaffold_15:12011109-12011337(-) (11)	NA	NA	NA	AT3G48770.1	DNA binding;ATP binding 	LOC_Os11g31480.1	"ATP binding protein, putative, expressed"	Medtr8g011570.1	"Proteinase inhibitor I3, Kunitz legume; ATP-binding region, ATPase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212912.1.S1_at	A	A1TS	POPTR_0015s11470	POPTR_0015s11470 (11)	scaffold_15:12052306-12053389(+) (11)	NA	Q5BIM2	Uncharacterized protein KIAA1539 homolog	AT3G26890.5	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g33520.1	expressed protein	Medtr7g094450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212912.1.S1_s_at	A	A1TS	POPTR_0015s11470	POPTR_0015s11470 (11)	scaffold_15:12052296-12053428(+) (11)	NA	Q5BIM2	Uncharacterized protein KIAA1539 homolog	AT3G26890.5	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g33520.1	expressed protein	Medtr7g094450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212913.1.S1_s_at	A	A1TS	POPTR_0015s11475	POPTR_0015s11475 (11)	scaffold_15:12059821-12060294(+) (11)	NA	B9IFI5	UPF0497 membrane protein 1	AT4G25040.1	Uncharacterised protein family (UPF0497) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212914.1.S1_at	A	A1TS	POPTR_0015s11490	POPTR_0015s11490 (11)	scaffold_15:12066427-12066933(-) (11)	NA	NA	NA	AT5G50900.1	ARM repeat superfamily protein 	LOC_Os10g37850.4	"armadillo, putative, expressed"	Medtr3g151140.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212914.1.S1_x_at	A	A1TS	POPTR_0015s11490	POPTR_0015s11490 (11)	scaffold_15:12066427-12066933(-) (11)	NA	NA	NA	AT5G50900.1	ARM repeat superfamily protein 	LOC_Os10g37850.4	"armadillo, putative, expressed"	Medtr3g151140.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212915.1.S1_at	A	A1TS	POPTR_0015s11510	POPTR_0015s11510 (11)	scaffold_15:12089736-12090063(-) (11)	NA	P29136	Metalloendoproteinase 1	AT1G24140.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g037460.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.212916.1.S1_at	A	A1TS	POPTR_0015s11520	POPTR_0015s11520 (11)	scaffold_15:12094088-12094665(-) (11)	NA	NA	NA	AT3G48800.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os03g63320.1	"SAM domain containing protein, putative, expressed"	Medtr4g152000.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212917.1.S1_at	A	A1TS	POPTR_0015s11530	POPTR_0015s11530 (11)	scaffold_15:12097400-12098716(-) (11)	NA	Q11204	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2"	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.212918.1.S1_s_at	A	A3TS	POPTR_0015s11540	POPTR_0015s11540 (11)//POPTR_2184s00010 (11)//POPTR_0010s23600 (10)	scaffold_15:12115490-12115627(-) (11)	NA	Q8GTR4	"Pullulanase 1, chloroplastic"	AT5G04360.1	limit dextrinase 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212919.1.S1_at	A	A1TS	POPTR_0015s11550	POPTR_0015s11550 (11)	scaffold_15:12117593-12118533(-) (11)	NA	Q93W88	Transcription factor bHLH137	AT5G50915.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g33580.2	"BEE 1, putative, expressed"	Medtr4g152040.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.212919.1.S1_s_at	A	A1TS	POPTR_0015s11550	POPTR_0015s11550 (11)	scaffold_15:12117262-12117577(-) (11)	NA	Q93W88	Transcription factor bHLH137	AT5G50915.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g33580.2	"BEE 1, putative, expressed"	Medtr4g152040.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.212920.1.S1_at	A	A1TS	POPTR_0015s11560	POPTR_0015s11560 (11)	scaffold_15:12138295-12140738(+) (11)	NA	P0ABF1	Poly(A) polymerase	AT5G23690.1	Polynucleotide adenylyltransferase family protein 	LOC_Os04g32490.2	"tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed"	Medtr4g152060.1	Polynucleotide adenylyltransferase region 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0016779|nucleotidyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.212921.1.S1_s_at	A	A1TS	POPTR_0015s11590	POPTR_0015s11590 (10)	scaffold_15:12154284-12157178(+) (10)	NA	NA	NA	AT3G48860.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212922.1.S1_at	A	A1TS	POPTR_0015s11610	POPTR_0015s11610 (10)	scaffold_15:12163981-12165339(+) (10)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.212923.1.S1_at	A	A1TS	POPTR_0015s11630	POPTR_0015s11630 (11)	scaffold_15:12187014-12188183(+) (11)	NA	Q9D7X3	Dual specificity protein phosphatase 3	AT5G23720.3	dual specificity protein phosphatase family protein 	LOC_Os01g20940.1	"PHS1, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.212924.1.S1_at	A	A1TS	POPTR_0015s11680	POPTR_0015s11680 (11)	scaffold_15:12242944-12244832(-) (11)	NA	Q9FIT8	ADP-ribosylation factor GTPase-activating protein AGD1	AT5G61980.1	ARF-GAP domain 1 	LOC_Os09g33600.1	"ARF GTPase-activating domain-containing protein, putative, expressed"	Medtr7g020730.1	Arf GTPase activating protein; BAR; Pleckstrin homology-type 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.212926.1.S1_at	A	A1TS	POPTR_0015s11710	POPTR_0015s11710 (11)	scaffold_15:12263258-12264800(-) (11)	NA	NA	NA	AT2G33550.1	Homeodomain-like superfamily protein 	LOC_Os01g70230.1	"transcription factor, putative"	Medtr4g152290.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212927.1.S1_at	A	A1TS	POPTR_0015s11720	POPTR_0015s11720 (11)	scaffold_15:12268287-12269897(+) (11)	NA	NA	NA	AT5G50930.1	Histone superfamily protein 	LOC_Os04g32600.1	expressed protein	Medtr3g151230.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212928.1.S1_at	A	A1TS	POPTR_0015s11740	POPTR_0015s11740 (11)	scaffold_15:12292090-12293363(-) (11)	NA	NA	NA	AT4G23490.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr7g088020.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212929.1.S1_at	A	A1TS	POPTR_0015s11760	POPTR_0015s11760 (11)	scaffold_15:12304333-12305269(+) (11)	NA	NA	NA	AT5G50970.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g63470.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g151320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212930.1.S1_s_at	A	A1TS	POPTR_0015s11770	POPTR_0015s11770 (11)	scaffold_15:12315816-12316270(+) (11)	NA	Q941L3	Protein BONZAI 1	AT5G61910.4	DCD (Development and Cell Death) domain protein 	LOC_Os02g32160.1	"copine, putative, expressed"	Medtr7g139920.1	"C2; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212931.1.S1_at	A	A1MS	POPTR_0015s11810	POPTR_0015s11810 (11)	scaffold_15:12336669-12336821(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212932.1.S1_at	A	A1TS	POPTR_0015s11820	POPTR_0015s11820 (11)	scaffold_15:12337441-12337854(-) (11)	NA	O04064	Floricaula/leafy homolog	AT5G61850.1	floral meristem identity control protein LEAFY (LFY) 	LOC_Os04g51000.1	"transcription factor FL, putative, expressed"	Medtr3g151360.1	Floricaula/leafy protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.212933.1.S1_at	A	A1TS	POPTR_0015s11830	POPTR_0015s11830 (11)	scaffold_15:12349917-12351248(+) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT1G27060.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os01g56990.1	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr5g039260.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212934.1.S1_at	A	A1TS	POPTR_0015s11860	POPTR_0015s11860 (11)	scaffold_15:12376077-12376634(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212935.1.S1_at	A	A1TS	POPTR_0015s11870	POPTR_0015s11870 (11)	scaffold_15:12386069-12388577(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212936.1.S1_at	A	A1TS	POPTR_0015s12030	POPTR_0015s12030 (11)	scaffold_15:12469129-12469420(+) (11)	NA	Q8BMD8	Calcium-binding mitochondrial carrier protein SCaMC-1	AT5G51050.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40200.2	"calcium-binding mitochondrial carrier CBG00135, putative, expressed"	Medtr3g151470.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212937.1.S1_at	A	A1TS	POPTR_0015s12050	POPTR_0015s12050 (10)	scaffold_15:12473323-12473932(+) (11)	NA	Q9FLS9	Pentatricopeptide repeat-containing protein At5g61800	AT5G61800.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g32870.1	"pentatricopeptide repeat-containing protein, putative"	Medtr3g012790.1	"pentatricopeptide, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212938.1.S1_at	A	A1TS	POPTR_0015s12110	POPTR_0015s12110 (11)	scaffold_15:12516147-12516487(+) (11)	NA	Q9FLT3	Germin-like protein subfamily 3 member 4	AT5G61750.1	RmlC-like cupins superfamily protein 	LOC_Os11g33110.1	"Cupin domain containing protein, expressed"	Medtr3g143310.1	Cupin region 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.212939.1.S1_at	A	A1TS	POPTR_0015s12120	POPTR_0015s12120 (11)	scaffold_15:12520963-12522721(+) (11)	NA	NA	NA	AT5G07380.2	unknown protein; Has 84 Blast hits to 81 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os01g01400.1	expressed protein	Medtr4g144730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212940.1.S1_at	A	A1TS	POPTR_0015s12140	POPTR_0015s12140 (9)	scaffold_15:12537028-12538199(+) (9)	NA	NA	NA	AT5G07400.1	forkhead-associated domain-containing protein / FHA domain-containing protein 	LOC_Os04g33050.1	"HIRAN domain containing protein, putative, expressed"	Medtr4g144690.1	Forkhead-associated; Tyrosyl-DNA phosphodiesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212941.1.S1_s_at	A	A1TS	POPTR_0015s12160	POPTR_0015s12160 (11)	scaffold_15:12549760-12550335(+) (11)	NA	Q9FDW0	Protein FRIGIDA	AT4G00650.1	FRIGIDA-like protein 	LOC_Os03g63440.1	"frigida, putative, expressed"	Medtr3g151640.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212942.1.S1_at	A	A1TS	POPTR_0015s12170	POPTR_0015s12170 (11)	scaffold_15:12555700-12556145(+) (11)	NA	Q9FMR0	Peroxidase 60	AT5G22410.1	root hair specific 18 	LOC_Os10g41720.1	"peroxidase precursor, putative, expressed"	Medtr7g103630.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.212943.1.S1_at	A	A1TS	POPTR_0015s12180	POPTR_0015s12180 (10)	scaffold_15:12558816-12559433(+) (10)	NA	Q54MZ3	Anaphase-promoting complex subunit cdc20	AT5G27570.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g51110.1	"WD repeat-containing protein, putative, expressed"	Medtr2g071390.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212945.1.S1_at	A	A1TS	POPTR_0015s12210	POPTR_0015s12210 (11)	scaffold_15:12568624-12569448(+) (11)	NA	Q3E6Y3	Uncharacterized protein At1g28695	AT1G28710.3	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os03g52160.1	"regulatory protein, putative, expressed"	Medtr1g064780.1	"Uncharacterized protein At4g15970, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212946.1.S1_at	A	A1TS	POPTR_0015s12280	POPTR_0015s12280 (11)	scaffold_15:12608186-12608741(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT4G10720.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr3g019830.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212947.1.S1_at	A	A1TS	POPTR_0015s12300	POPTR_0015s12300 (11)	scaffold_15:12610025-12610577(+) (11)	NA	NA	NA	AT5G51160.1	Ankyrin repeat family protein 	NA	NA	Medtr7g104280.1	"Ankyrin, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212948.1.S1_at	A	A1TS	POPTR_0015s12340	POPTR_0015s12340 (10)	scaffold_15:12628544-12628585(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212949.1.S1_s_at	A	A1TS	POPTR_0015s12350	POPTR_0015s12350 (11)	scaffold_15:12631434-12631954(-) (11)	NA	O82175	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5"	AT2G35160.1	SU(VAR)3-9 homolog 5 	LOC_Os09g19830.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr5g013560.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212951.1.S1_at	A	A1TS	POPTR_0015s12360	POPTR_0015s12360 (11)	scaffold_15:12638574-12639957(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212952.1.S1_at	A	A1TS	POPTR_0015s12400	POPTR_0015s12400 (10)	scaffold_15:12658524-12659821(-) (10)	NA	B9NAN0	"Arginine biosynthesis bifunctional protein ArgJ, chloroplastic"	AT2G37500.1	arginine biosynthesis protein ArgJ family 	LOC_Os03g17120.2	"arginine biosynthesis bifunctional protein argJ 1, putative, expressed"	AC233662_37.1	Arginine biosynthesis protein ArgJ AC233662.1 191889-184516 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212953.1.S1_at	A	A1TS	POPTR_0015s12450	POPTR_0015s12450 (10)	scaffold_15:12694919-12695303(-) (10)	NA	Q7YR39	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	AT1G32490.2	RNA helicase family protein 	LOC_Os08g24760.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr5g083120.1	"Helicase, C-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212954.1.S1_at	A	A1TS	POPTR_0015s12480	POPTR_0015s12480 (11)	scaffold_15:12714643-12715224(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT5G45120.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g43550.1	Eukaryotic aspartyl protease domain containing protein	Medtr8g105840.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212956.1.S1_at	A	A1TS	POPTR_0015s12550	POPTR_0015s12550 (11)	scaffold_15:12774899-12776790(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212957.1.S1_x_at	A	A2TS	POPTR_0015s12560	POPTR_0015s12560 (11)//POPTR_0296s00200 (11)	scaffold_15:12783693-12784069(-) (11)//scaffold_296:2797-3173(-) (11)	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr2g055510.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212958.1.S1_at	A	A1TS	POPTR_0096s00250	POPTR_0096s00250 (11)	scaffold_96:67060-67172(-) (11)	NA	Q7XBQ9	Disease resistance protein RGA2	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.212964.1.S1_s_at	A	A3TS	POPTR_0015s11910	POPTR_0015s15890 (11)//POPTR_0015s11910 (11)//POPTR_0015s12630 (11)	scaffold_15:12410539-12410616(+) (11)//scaffold_15:12880195-12880272(-) (11)//scaffold_15:15066463-15066540(+) (11)//scaffold_88:72877-72954(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212965.1.S1_x_at	A	A4TS	POPTR_0015s15870	POPTR_0015s15920 (11)//POPTR_0015s15870 (11)//POPTR_0015s11860 (10)//POPTR_0015s11900 (10)	scaffold_15:12375652-12375690(+) (10)//scaffold_15:12398352-12398390(+) (10)//scaffold_15:15046194-15046232(+) (11)//scaffold_15:15090692-15090730(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212967.1.S1_x_at	A	A1TS	POPTR_0015s15875	POPTR_0015s15875 (11)	scaffold_15:15062745-15062841(+) (11)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os10g39570.1	conserved hypothetical protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212970.1.S1_s_at	A	A5TS	POPTR_0012s11900	POPTR_0015s15800 (11)//POPTR_0012s11900 (11)//POPTR_0015s12580 (11)//POPTR_0015s15840 (11)//POPTR_0015s12670 (9)	scaffold_12:12253718-12254482(-) (11)//scaffold_15:12798706-12799337(+) (11)//scaffold_15:12907925-12907959(+) (9)//scaffold_15:15009724-15010465(+) (11)//scaffold_15:15023631-15024264(-) (11)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.212971.1.S1_at	A	A1TS	POPTR_0015s15790	POPTR_0015s15790 (11)	scaffold_15:14995483-14995685(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g07190.1	expressed protein	Medtr2g034510.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212971.1.S1_s_at	A	A1TS	POPTR_0015s15790	POPTR_0015s15790 (11)	scaffold_15:14995503-14995824(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g07190.1	expressed protein	Medtr2g034510.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212971.1.S1_x_at	A	A1TS	POPTR_0015s15790	POPTR_0015s15790 (11)	scaffold_15:14994917-14995700(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g07190.1	expressed protein	Medtr2g034510.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212972.1.S1_at	A	A1TS	POPTR_0015s15780	POPTR_0015s15780 (11)	scaffold_15:14990560-14990994(+) (11)	NA	Q7XTS4	Protein argonaute 2	AT1G31280.1	Argonaute family protein 	LOC_Os04g52540.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g034460.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212973.1.S1_at	A	A1TS	POPTR_0015s15770	POPTR_0015s15770 (11)	scaffold_15:14972021-14972485(-) (11)	NA	NA	NA	AT3G05320.1	O-fucosyltransferase family protein 	LOC_Os02g07200.3	"protein-O-fucosyltransferase 1, putative, expressed"	Medtr4g114850.1	"protein-O-fucosyltransferase 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212974.1.S1_s_at	A	A2TS	POPTR_0015s15730	POPTR_0015s15750 (11)//POPTR_0015s15730 (11)	scaffold_15:14954171-14954612(+) (11)//scaffold_15:14962776-14963218(+) (11)	NA	Q8W245	Probable zinc transporter 10	AT1G31260.1	zinc transporter 10 precursor 	LOC_Os03g46470.1	"metal cation transporter, putative, expressed"	Medtr4g114830.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.212975.1.S1_s_at	A	A2MS	POPTR_0015s15740	POPTR_0015s15760 (11)//POPTR_0015s15740 (11)	scaffold_15:14960082-14960511(+) (11)//scaffold_15:14965971-14966400(+) (11)	NA	NA	NA	AT4G19670.2	RING/U-box superfamily protein 	LOC_Os12g43560.1	"zinc finger, putative, expressed"	Medtr2g034440.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212976.1.S1_at	A	A1TS	POPTR_0015s15730	POPTR_0015s15730 (11)	scaffold_15:14952530-14952574(+) (11)	NA	Q8W245	Probable zinc transporter 10	AT1G31260.1	zinc transporter 10 precursor 	LOC_Os03g46470.1	"metal cation transporter, putative, expressed"	Medtr4g114830.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.212978.1.S1_at	A	A1TS	POPTR_0015s15710	POPTR_0015s15710 (11)	scaffold_15:14919428-14919950(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028020.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212979.1.S1_at	A	A1TS	POPTR_0015s15710	POPTR_0015s15710 (11)	scaffold_15:14917079-14918184(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028020.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212980.1.S1_at	A	A1TS	POPTR_0015s15700	POPTR_0015s15700 (11)	scaffold_15:14914634-14915050(-) (11)	NA	NA	NA	AT1G31240.1	Bromodomain transcription factor 	LOC_Os02g47160.1	"OsWAK17 - OsWAK short gene, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212982.1.S1_at	A	A1TS	POPTR_0015s15680	POPTR_0015s15680 (10)	scaffold_15:14906502-14906682(+) (11)	NA	NA	NA	AT4G19830.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os02g07220.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212984.1.S1_at	A	A1TS	POPTR_0015s15590	POPTR_0015s15590 (11)	scaffold_15:14845987-14846060(+) (11)//scaffold_15:14878570-14878643(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212984.1.S1_x_at	A	A1TS	POPTR_0015s15590	POPTR_0015s15590 (11)	scaffold_15:14845803-14846060(+) (11)//scaffold_15:14878570-14878822(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212986.1.S1_at	A	A1TS	POPTR_0015s15570	POPTR_0015s15570 (11)	scaffold_15:14811454-14813520(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g021630.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212988.1.S1_at	A	A1TS	POPTR_0015s15550	POPTR_0015s15550 (11)	scaffold_15:14797705-14798072(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212989.1.S1_at	A	A1TS	POPTR_0015s15540	POPTR_0015s15540 (11)	scaffold_15:14791250-14791656(-) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT5G04690.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212991.1.S1_at	A	A1TS	POPTR_0015s15530	POPTR_0015s15530 (9)	scaffold_15:14783436-14783808(+) (9)	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	NA	NA	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212995.1.S1_at	A	A1MS	POPTR_0015s15490	POPTR_0015s15490 (11)	scaffold_15:14741640-14741958(-) (11)	NA	O81865	Protein PHLOEM PROTEIN 2-LIKE A1	AT4G19840.1	phloem protein 2-A1 	LOC_Os01g06500.1	"PHLOEM 2-LIKE A5, putative, expressed"	Medtr4g114610.1	"F-box protein PP2-B10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212996.1.S1_s_at	A	A3TS	POPTR_0015s15460	POPTR_1072s00210 (11)//POPTR_0015s15470 (11)//POPTR_0015s15460 (11)	scaffold_1072:4150-4736(+) (11)//scaffold_15:14723493-14724086(-) (11)//scaffold_15:14733490-14734051(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212997.1.S1_at	A	A2TS	POPTR_0015s15480	POPTR_1072s00200 (10)//POPTR_0015s15480 (10)	scaffold_1072:1259-1575(-) (11)//scaffold_15:14736608-14736924(+) (11)	NA	Q94F00	"Phosphatase IMPL1, chloroplastic"	AT1G31190.1	myo-inositol monophosphatase like 1 	LOC_Os02g07350.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.212998.1.S1_s_at	A	A1TS	POPTR_0015s15430	POPTR_0015s15430 (11)	scaffold_15:14714553-14715310(+) (11)	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.212999.1.S1_s_at	A	A1MS	POPTR_0015s15400	POPTR_0015s15400 (10)	scaffold_15:14699433-14700211(-) (11)	NA	O48651	Squalene monooxygenase	AT4G37760.1	squalene epoxidase 3 	LOC_Os03g12910.2	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2130.1.A1_at	A	A1TS	POPTR_0008s07380	POPTR_0008s07380 (11)	scaffold_8:4527675-4528322(-) (11)	NA	Q9FLB5	Laccase-12	AT5G05390.1	laccase 12 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr3g097050.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.213000.1.S1_at	A	A1TS	POPTR_0015s15360	POPTR_0015s15360 (11)	scaffold_15:14669575-14669877(+) (11)	NA	P0C8Q3	Pentatricopeptide repeat-containing protein At4g19895	AT4G19890.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os11g39360.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	AC233656_8.1	"Glycoside hydrolase, family 63 AC233656.1 29981-26418 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213001.1.S1_at	A	A1TS	POPTR_0015s15350	POPTR_0015s15350 (11)	scaffold_15:14661419-14661976(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g020460.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.213002.1.S1_at	A	A1TS	POPTR_0015s15320	POPTR_0015s15320 (11)	scaffold_15:14643962-14646500(+) (11)	NA	P0C8Q4	Uncharacterized protein At4g19900	AT4G19900.1	"alpha 1,4-glycosyltransferase family protein "	LOC_Os07g37990.1	"glycosyltransferase sugar-binding region containing DXD motif, putative, expressed"	Medtr4g114510.1	"Glycosyltransferase sugar-binding region containing DXD motif; Alpha 1,4-glycosyltransferase conserved region "	NA	GO:0008378|galactosyltransferase activity	GO:0005795|Golgi stack
PtpAffx.213004.1.S1_at	A	A1TS	POPTR_0015s15310	POPTR_0015s15310 (11)	scaffold_15:14634928-14635197(+) (11)	NA	P37707	B2 protein	AT2G35140.3	DCD (Development and Cell Death) domain protein 	LOC_Os09g39020.1	"N-rich protein, putative, expressed"	AC233682_26.1	Kelch related AC233682.2 99226-97580 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213005.1.S1_at	A	A1TS	POPTR_0015s15280	POPTR_0015s15280 (9)	scaffold_15:14617235-14617719(+) (9)	NA	Q2MY58	Patatin group A-3	AT3G54950.1	patatin-like protein 6 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g121000.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.213006.1.S1_s_at	A	A4TS	POPTR_0015s15130	POPTR_0015s15130 (11)//POPTR_0015s15190 (11)//POPTR_0015s15270 (11)//POPTR_0015s15160 (9)	scaffold_15:14498084-14498630(-) (11)//scaffold_15:14526447-14527083(-) (9)//scaffold_15:14541594-14542140(-) (11)//scaffold_15:14601357-14601903(-) (11)	POPTR_0113s00270 (7)	P08824	RuBisCO large subunit-binding protein subunit alpha (Fragment)	AT5G18820.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g64210.1	"T-complex protein, putative, expressed"	Medtr4g114440.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.213008.1.S1_at	A	A1TS	POPTR_0015s15030	POPTR_0015s15030 (11)	scaffold_15:14394702-14395339(+) (11)	NA	Q5S2C4	Protein NAP1	AT2G35110.2	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213009.1.S1_at	A	A1TS	POPTR_0015s15025	POPTR_0015s15025 (9)	scaffold_15:14391378-14391602(+) (9)//scaffold_668:9884-10109(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213010.1.S1_at	A	A1TS	POPTR_0015s15000	POPTR_0015s15000 (11)	scaffold_15:14375402-14375710(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os08g31000.1	expressed protein	Medtr5g098460.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213012.1.S1_at	A	A1TS	POPTR_0015s14980	POPTR_0015s14980 (11)	scaffold_15:14363231-14363681(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g139430.1	Mevalonate kinase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213013.1.S1_at	A	A1TS	POPTR_0015s14970	POPTR_0015s14970 (11)	scaffold_15:14361096-14361986(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213014.1.S1_at	A	A1TS	POPTR_0015s14950	POPTR_0015s14950 (11)	scaffold_15:14342463-14343648(-) (11)	NA	Q9ATE5	MADS-box protein FBP24	AT5G23260.2	K-box region and MADS-box transcription factor family protein  	LOC_Os02g07430.2	"OsMADS29 - MADS-box family gene with MIKCc type-box, expressed"	Medtr1g046070.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.213017.1.S1_at	A	A1TS	POPTR_0015s14840	POPTR_0015s14840 (11)	scaffold_15:14303341-14303912(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213018.1.S1_at	A	A1TS	POPTR_0015s14830	POPTR_0015s14830 (11)	scaffold_15:14295746-14295984(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.213019.1.S1_at	A	A1TS	POPTR_0015s14770	POPTR_0015s14770 (10)	scaffold_15:14249220-14250008(+) (10)	NA	Q9FWX2	NAC domain-containing protein 7	AT1G12260.1	NAC 007 	LOC_Os02g42970.1	"NAC domain containing protein, putative"	Medtr8g106290.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.213020.1.S1_at	A	A1TS	POPTR_0015s14760	POPTR_0015s14760 (11)	scaffold_15:14233187-14233779(+) (11)	NA	O22149	Probable pectinesterase/pectinesterase inhibitor 17	AT2G45220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr3g040380.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.213021.1.S1_at	A	A1TS	POPTR_0015s14750	POPTR_0015s14750 (11)	scaffold_15:14229652-14229842(+) (11)	NA	Q6DIP3	RING finger protein 126	AT1G68180.1	RING/U-box superfamily protein 	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g007460.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213022.1.S1_at	A	A1TS	POPTR_0015s14710	POPTR_0015s14710 (11)	scaffold_15:14207087-14207832(-) (11)	NA	Q9CAC1	Endoglucanase 8	AT1G70710.1	glycosyl hydrolase 9B1 	LOC_Os06g14540.1	"endoglucanase, putative, expressed"	Medtr4g157670.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.213023.1.S1_at	A	A1TS	POPTR_0015s14630	POPTR_0015s14630 (11)	scaffold_15:14162217-14162508(+) (11)	NA	Q9SB36	"Pentatricopeptide repeat-containing protein At4g25270, chloroplastic"	AT4G25270.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g63560.1	"pentatricopeptide, putative, expressed"	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213024.1.S1_at	A	A1MS	POPTR_0015s14620	POPTR_0015s14620 (11)	scaffold_15:14153603-14154160(+) (11)	NA	P17407	21 kDa protein	AT4G25250.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010170.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.213025.1.S1_at	A	A1TS	POPTR_0015s14590	POPTR_0015s14590 (11)	scaffold_15:14127628-14130520(+) (11)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT5G62310.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213027.1.S1_at	A	A1TS	POPTR_0015s14480	POPTR_0015s14480 (10)	scaffold_15:14051950-14052387(-) (10)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT5G51560.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.213028.1.S1_at	A	A1TS	POPTR_0015s14470	POPTR_0015s14470 (11)	scaffold_15:14049876-14050435(-) (11)	NA	Q42560	Aconitate hydratase 1	AT4G35830.2	aconitase 1 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr5g022930.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213029.1.S1_at	A	A1TS	POPTR_0015s14460	POPTR_0015s14460 (11)	scaffold_15:14048307-14048715(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213031.1.S1_s_at	A	A1TS	POPTR_0015s14410	POPTR_0015s14410 (11)	scaffold_15:14020469-14021031(+) (11)	NA	NA	NA	AT1G12380.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os02g25230.1	expressed protein	Medtr6g069780.1	"F5O11.10, putative "	NA	GO:0003677|DNA binding	NA
PtpAffx.213032.1.S1_s_at	A	A2TS	POPTR_0012s14340	POPTR_0012s14340 (11)//POPTR_0015s14350 (11)	scaffold_12:14273002-14273311(+) (11)//scaffold_15:13991209-13991536(+) (11)	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213032.1.S1_x_at	A	A1TS	POPTR_0015s14350	POPTR_0015s14350 (9)	scaffold_15:13991177-13992366(+) (11)	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213034.1.S1_at	A	A1TS	POPTR_0015s14280	POPTR_0015s14280 (11)	scaffold_15:13955289-13955698(+) (11)	NA	Q8GYY0	Probable aminotransferase ACS12	AT5G51690.1	1-amino-cyclopropane-1-carboxylate synthase 12 	LOC_Os06g03990.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g011530.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.213035.1.S1_at	A	A1TS	POPTR_0015s14270	POPTR_0015s14270 (11)	scaffold_15:13950480-13951149(+) (11)	NA	C0LGW6	LRR receptor-like serine/threonine-protein kinase ERL1	AT5G62230.1	ERECTA-like 1 	LOC_Os06g03970.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr1g019670.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213036.1.S1_at	A	A1TS	POPTR_0015s14170	POPTR_0015s14170 (11)	scaffold_15:13876722-13877328(+) (11)	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os06g03930.1	"cytochrome P450 86A1, putative, expressed"	Medtr8g151050.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213037.1.S1_at	A	A1MS	POPTR_0015s14160	POPTR_0015s14160 (9)	scaffold_15:13874162-13874886(+) (10)	NA	NA	NA	AT5G51740.1	Peptidase family M48 family protein 	LOC_Os02g50230.1	"peptidase, putative, expressed"	Medtr6g067190.1	"Peptidase M48, Ste24p "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213039.1.S1_at	A	A1TS	POPTR_0015s14140	POPTR_0015s14140 (11)	scaffold_15:13862801-13863370(+) (11)	NA	Q8GW72	Alpha-L-fucosidase 1	AT2G28100.1	alpha-L-fucosidase 1 	LOC_Os09g34920.1	"glycosyl hydrolase family 29, putative, expressed"	Medtr1g130150.1	"Glycoside hydrolase, family 29 (alpha-L-fucosidase) "	GO:0005975|carbohydrate metabolic process||GO:0007155|cell adhesion	GO:0004560|alpha-L-fucosidase activity	NA
PtpAffx.213041.1.S1_at	A	A1TS	POPTR_0015s14080	POPTR_0015s14080 (11)	scaffold_15:13816538-13816614(-) (11)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT4G25390.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	Medtr8g150930.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213041.1.S1_x_at	A	A1TS	POPTR_0015s14080	POPTR_0015s14080 (11)	scaffold_15:13816444-13816907(-) (11)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT4G25390.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	Medtr8g150930.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213042.1.S1_at	A	A1TS	POPTR_0015s14070	POPTR_0015s14070 (11)	scaffold_15:13808832-13809144(-) (11)	NA	Q9STJ6	Transcription factor bHLH126	AT4G25410.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr1g130320.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.213042.1.S1_s_at	A	A1TS	POPTR_0015s14070	POPTR_0015s14070 (11)	scaffold_15:13809166-13809658(-) (11)	NA	Q9STJ6	Transcription factor bHLH126	AT4G25410.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr1g130320.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.213044.1.S1_at	A	A1TS	POPTR_0015s14050	POPTR_0015s14050 (11)	scaffold_15:13797135-13798091(-) (11)	NA	Q9FLI0	Transcription factor bHLH120	AT5G51790.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr1g130330.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.213045.1.S1_at	A	A1TS	POPTR_0015s14010	POPTR_0015s14010 (10)	scaffold_15:13757637-13760330(-) (11)	NA	Q7XUN2	MADS-box transcription factor 17	AT5G15800.1	K-box region and MADS-box transcription factor family protein  	LOC_Os04g49150.1	"OsMADS17 - MADS-box family gene with MIKCc type-box, expressed"	Medtr1g129880.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.213046.1.S1_at	A	A1TS	POPTR_0015s13950	POPTR_0015s13950 (11)	scaffold_15:13706118-13706684(-) (11)	NA	NA	NA	AT5G62170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 381 Blast hits to 359 proteins in 81 species: Archae - 0; Bacteria - 16; Metazoa - 101; Fungi - 21; Plants - 99; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink). 	NA	NA	Medtr1g129820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213048.1.S1_at	A	A1TS	POPTR_0015s13900	POPTR_0015s13900 (11)	scaffold_15:13652761-13653251(+) (11)	NA	Q8K0H1	Multidrug and toxin extrusion protein 1	AT4G23030.1	MATE efflux family protein 	LOC_Os02g45380.1	"MATE domain containing protein, expressed"	Medtr1g129410.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.213049.1.S1_at	A	A1TS	POPTR_0015s13890	POPTR_0015s13890 (11)	scaffold_15:13640327-13640767(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213050.1.S1_at	A	A1TS	POPTR_0015s13880	POPTR_0015s13880 (11)	scaffold_15:13634011-13634590(+) (11)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213051.1.S1_x_at	A	A1TS	POPTR_0015s13870	POPTR_0015s13870 (9)	scaffold_15:13627008-13627834(+) (11)	NA	P59468	LOB domain-containing protein 24	AT3G26660.1	LOB domain-containing protein 24 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g100360.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213052.1.S1_at	A	A1TS	POPTR_0015s13860	POPTR_0015s13860 (11)	scaffold_15:13624934-13625691(+) (11)	NA	Q9LYP5	Putative two-component response regulator ARR21	AT5G07210.1	response regulator 21 	LOC_Os03g12350.4	"two-component response regulator, putative, expressed"	Medtr7g027130.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.213054.1.S1_at	A	A1TS	POPTR_0015s13800	POPTR_0015s13800 (11)	scaffold_15:13582281-13583674(-) (11)	NA	Q8LPQ6	ABC transporter B family member 28	AT4G25450.1	non-intrinsic ABC protein 8 	LOC_Os07g28090.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC229695_27.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 AC229695.5 132649-127780 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.213055.1.S1_at	A	A1TS	POPTR_0015s13800	POPTR_0015s13800 (11)	scaffold_15:13580222-13582030(-) (11)	NA	Q8LPQ6	ABC transporter B family member 28	AT4G25450.1	non-intrinsic ABC protein 8 	LOC_Os07g28090.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC229695_27.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 AC229695.5 132649-127780 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.213057.1.S1_at	A	A1TS	POPTR_0015s13750	POPTR_0015s13750 (11)	scaffold_15:13555893-13556822(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213058.1.S1_at	A	A1TS	POPTR_0015s13740	POPTR_0015s13740 (11)	scaffold_15:13555088-13555760(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213059.1.S1_at	A	A1TS	POPTR_0015s13730	POPTR_0015s13730 (11)	scaffold_15:13548920-13549186(-) (11)	NA	NA	NA	AT4G25433.1	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g02685.1	"lysM domain containing protein, putative, expressed"	Medtr1g129580.1	Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.213060.1.S1_at	A	A1TS	POPTR_0015s13690	POPTR_0015s13690 (11)	scaffold_15:13528908-13529370(-) (11)	NA	Q8LGM7	Molybdenum cofactor sulfurase	AT5G51920.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g43180.1	expressed protein	Medtr1g129690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213061.1.S1_at	A	A1TS	POPTR_0015s13680	POPTR_0015s13680 (11)	scaffold_15:13525092-13525652(+) (11)	NA	Q9SZK1	Pentatricopeptide repeat-containing protein At4g38010	AT4G38010.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os04g41120.1	"pentatricopeptide, putative, expressed"	Medtr4g021980.1	Site-specific DNA-methyltransferase (cytosine-N4-specific) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213062.1.S1_at	A	A1TS	POPTR_0015s13660	POPTR_0015s13660 (11)	scaffold_15:13518269-13518708(-) (11)	NA	Q9LT89	Transcription factor TCP19	AT5G51910.2	TCP family transcription factor  	LOC_Os08g43160.1	"TCP family transcription factor, putative, expressed"	Medtr1g129720.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213062.1.S1_x_at	A	A1TS	POPTR_0015s13660	POPTR_0015s13660 (11)	scaffold_15:13518273-13518882(-) (11)	NA	Q9LT89	Transcription factor TCP19	AT5G51910.2	TCP family transcription factor  	LOC_Os08g43160.1	"TCP family transcription factor, putative, expressed"	Medtr1g129720.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213063.1.S1_at	A	A1TS	POPTR_0015s13650	POPTR_0015s13650 (11)	scaffold_15:13512893-13513506(-) (11)	NA	Q9LT91	Peroxidase 66	AT5G51890.1	Peroxidase superfamily protein 	LOC_Os02g58720.2	"peroxidase precursor, putative, expressed"	Medtr1g129740.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.213065.1.S1_at	A	A1TS	POPTR_0015s13580	POPTR_0015s13580 (11)	scaffold_15:13464352-13465242(-) (11)	NA	O80844	Probable methyltransferase PMT16	AT2G45750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.213066.1.S1_at	A	A1TS	POPTR_0015s13560	POPTR_0015s13560 (10)	scaffold_15:13457443-13457964(-) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G38180.1	FAR1-related sequence 5 	LOC_Os07g42400.2	"transposon protein, putative, unclassified, expressed"	Medtr1g129290.1	"Zinc finger, PMZ-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213067.1.S1_at	A	A1TS	POPTR_0015s13550	POPTR_0015s13550 (11)	scaffold_15:13444423-13455467(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G03620.1	MATE efflux family protein 	LOC_Os11g03240.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.213067.1.S1_s_at	A	A2TS	POPTR_0015s13540	POPTR_0015s13550 (11)//POPTR_0015s13540 (11)	scaffold_15:13443231-13444401(+) (11)//scaffold_15:13454119-13455326(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G03620.1	MATE efflux family protein 	LOC_Os11g03240.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.213068.1.S1_at	A	A1TS	POPTR_0015s13540	POPTR_0015s13540 (11)	scaffold_15:13443060-13443492(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G03620.1	MATE efflux family protein 	LOC_Os11g03240.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.213069.1.S1_at	A	A1TS	POPTR_0015s13530	POPTR_0015s13530 (10)	scaffold_15:13433614-13434067(-) (10)	NA	NA	NA	AT3G13760.1	Cysteine/Histidine-rich C1 domain family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213070.1.S1_s_at	A	A1TS	POPTR_0015s13470	POPTR_0015s13470 (11)	scaffold_15:13406008-13407842(-) (11)	NA	NA	NA	AT5G52230.2	methyl-CPG-binding domain protein 13 	LOC_Os04g19684.1	"methyl-CpG binding domain containing protein, expressed"	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213071.1.S1_at	A	A1TA	POPTR_0015s13470	POPTR_0015s13470 (10)	scaffold_15:13404314-13405125(+) (10)	NA	NA	NA	AT5G52230.2	methyl-CPG-binding domain protein 13 	LOC_Os04g19684.1	"methyl-CpG binding domain containing protein, expressed"	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213072.1.S1_at	A	A1MS	POPTR_0015s13420	POPTR_0015s13420 (11)	scaffold_15:13391871-13392451(+) (11)	NA	O04220	Chalcone synthase	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213073.1.S1_at	A	A1TS	POPTR_0015s13390	POPTR_0015s13390 (11)	scaffold_15:13376709-13377053(-) (11)	NA	Q9SCW4	Heat stress transcription factor B-2a	AT5G62020.1	heat shock transcription factor  B2A 	LOC_Os08g43334.2	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g010870.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.213074.1.S1_at	A	A1TS	POPTR_0015s13380	POPTR_0015s13380 (11)	scaffold_15:13373262-13373543(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G07280.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os01g68870.2	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213076.1.S1_at	A	A1TS	POPTR_0015s13350	POPTR_0015s13350 (11)	scaffold_15:13342790-13343284(+) (11)	NA	NA	NA	AT4G33495.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os01g43040.1	"amino acid transporter, putative, expressed"	Medtr7g105350.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213077.1.S1_at	A	A1TS	POPTR_0015s13340	POPTR_0015s13340 (11)	scaffold_15:13338730-13338766(+) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr1g129250.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.213077.1.S1_s_at	A	A1TS	POPTR_0015s13340	POPTR_0015s13340 (11)	scaffold_15:13338853-13339358(+) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr1g129250.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.213078.1.S1_at	A	A1TS	POPTR_0015s13310	POPTR_0015s13310 (11)	scaffold_15:13319507-13319962(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g129270.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213078.1.S1_x_at	A	A1TS	POPTR_0015s13310	POPTR_0015s13310 (11)	scaffold_15:13319494-13320115(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g129270.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213079.1.S1_at	A	A1TS	POPTR_0015s13295	POPTR_0015s13295 (11)	scaffold_15:13308822-13310624(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213080.1.S1_at	A	A1TS	POPTR_0015s13250	POPTR_0015s13250 (11)	scaffold_15:13291700-13292827(+) (11)	NA	Q9M2Z3	Flap endonuclease GEN-like 2	AT3G48900.2	single-stranded DNA endonuclease family protein 	LOC_Os08g01130.1	"flap endonuclease, putative, expressed"	Medtr6g059430.1	"Chromo; Helix-hairpin-helix motif, class 2 "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0004518|nuclease activity	NA
PtpAffx.213081.1.S1_at	A	A1TS	POPTR_0015s13240	POPTR_0015s13240 (11)	scaffold_15:13283320-13284114(+) (11)	NA	O65607	DNA mismatch repair protein Msh3	AT4G25540.1	homolog of DNA mismatch repair protein MSH3 	LOC_Os04g58630.2	"DNA mismatch repair protein MSH3, putative, expressed"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.213082.1.S1_at	A	A1TS	POPTR_0015s13230	POPTR_0015s13230 (11)	scaffold_15:13276292-13277027(+) (11)	NA	Q4R6Y6	snRNA-activating protein complex subunit 3	AT1G28560.2	snRNA activating complex family protein 	LOC_Os01g68440.1	expressed protein	Medtr1g042860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213083.1.S1_s_at	A	A1TS	POPTR_0015s13220	POPTR_0015s13220 (11)	scaffold_15:13270952-13271674(-) (11)	NA	Q9MA15	"Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic"	AT1G79600.1	Protein kinase superfamily protein 	LOC_Os05g25840.3	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213084.1.S1_at	A	A1TS	POPTR_0015s13210	POPTR_0015s13210 (10)	scaffold_15:13265889-13266434(-) (11)	NA	P43254	E3 ubiquitin-protein ligase COP1	AT5G23730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g02380.1	"suppressor of phythchrome A, putative"	Medtr5g092630.1	"Zinc finger, RING-type; WD40-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213085.1.S1_at	A	A1TS	POPTR_0015s13190	POPTR_0015s13190 (11)	scaffold_15:13245654-13246614(-) (11)	NA	Q9M0K4	Transcription factor LAF1	AT5G52260.1	myb domain protein 19 	LOC_Os04g45020.1	"MYB family transcription factor, putative, expressed"	Medtr6g059750.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213086.1.S1_at	A	A1TS	POPTR_0015s13140	POPTR_0015s13140 (10)	scaffold_15:13218063-13218951(-) (11)	NA	NA	NA	AT5G52280.1	Myosin heavy chain-related protein 	LOC_Os10g36060.1	"protein transport protein-related, putative, expressed"	Medtr5g010660.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.213087.1.S1_at	A	A1TS	POPTR_0015s13140	POPTR_0015s13140 (11)	scaffold_15:13215632-13215771(-) (11)	NA	NA	NA	AT5G52280.1	Myosin heavy chain-related protein 	LOC_Os10g36060.1	"protein transport protein-related, putative, expressed"	Medtr5g010660.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.213088.1.S1_at	A	A1TS	POPTR_0015s13140	POPTR_0015s13140 (11)	scaffold_15:13215198-13215419(-) (11)	NA	NA	NA	AT5G52280.1	Myosin heavy chain-related protein 	LOC_Os10g36060.1	"protein transport protein-related, putative, expressed"	Medtr5g010660.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.213091.1.S1_at	A	A1TS	POPTR_0015s13120	POPTR_0015s13120 (11)	scaffold_15:13207167-13207691(-) (11)	NA	Q9M1D8	Pentatricopeptide repeat-containing protein At3g60050	AT3G60050.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g36190.1	"PPR repeat domain containing protein, putative, expressed"	AC235674_18.1	Pentatricopeptide repeat AC235674.1 92108-90603 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213092.1.S1_at	A	A1TS	POPTR_0015s13100	POPTR_0015s13100 (11)	scaffold_15:13198373-13199147(+) (11)	NA	NA	NA	AT3G48970.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g06080.1	"heavy metal-associated domain containing protein, expressed"	Medtr4g098440.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.213093.1.S1_x_at	A	A1TS	POPTR_0015s13060	POPTR_0015s13060 (10)	scaffold_15:13181695-13181958(+) (11)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.213094.1.S1_s_at	A	A1TS	POPTR_0015s13040	POPTR_0015s13040 (10)	scaffold_15:13157252-13159235(-) (10)	NA	Q7ZUX1	DNA-directed RNA polymerase III subunit RPC3	AT3G49000.1	RNA polymerase III subunit RPC82 family protein 	LOC_Os01g48720.1	"RNA polymerase III subunit RPC82 family protein, putative, expressed"	Medtr1g127070.2	RNA polymerase III subunit RPC82 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.213095.1.S1_at	A	A1TS	POPTR_0015s13020	POPTR_0015s13020 (11)	scaffold_15:13142057-13143604(-) (11)	NA	Q05047	Secologanin synthase	AT5G52400.1	"cytochrome P450, family 715, subfamily A, polypeptide 1 "	LOC_Os02g57810.1	"cytochrome P450, putative"	Medtr1g127040.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.213096.1.S1_at	A	A1TS	POPTR_0015s13010	POPTR_0015s13010 (11)	scaffold_15:13132238-13141731(+) (11)	NA	NA	NA	AT4G20850.1	tripeptidyl peptidase ii 	NA	NA	Medtr1g127030.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213097.1.S1_at	A	A1TS	POPTR_0015s12970	POPTR_0015s12970 (11)	scaffold_15:13105125-13105928(-) (11)	NA	NA	NA	AT5G23890.1	"LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os03g64400.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr5g069510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213097.1.S1_s_at	A	A2TS	POPTR_0015s12970	POPTR_0015s12970 (11)//POPTR_0012s13070 (9)	scaffold_12:13367179-13367763(-) (9)//scaffold_15:13105341-13105963(-) (11)	NA	NA	NA	AT5G23890.1	"LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os03g64400.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr5g069510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213098.1.S1_at	A	A1TS	POPTR_0015s12940	POPTR_0015s12940 (11)	scaffold_15:13090695-13091841(-) (11)	NA	Q3V300	Kinesin-like protein KIF22	AT5G23910.1	ATP binding microtubule motor family protein 	LOC_Os04g30720.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g068180.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003677|DNA binding||GO:0003777|microtubule motor activity||GO:0005524|ATP binding	GO:0005622|intracellular
PtpAffx.213099.1.S1_at	A	A1TS	POPTR_0015s12920	POPTR_0015s12920 (11)	scaffold_15:13088671-13089535(+) (11)	NA	Q5XVA8	Uncharacterized protein At3g49055	AT3G49055.1	unknown protein; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24560.1); Has 52205 Blast hits to 29376 proteins in 1994 species: Archae - 873; Bacteria - 6150; Metazoa - 27099; Fungi - 3784; Plants - 3062; Viruses - 130; Other Eukaryotes - 11107 (source: NCBI BLink). 	LOC_Os08g44550.1	expressed protein	Medtr1g126850.1	"Uncharacterized protein At3g49055, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213100.1.S1_at	A	A1TS	POPTR_0015s12890	POPTR_0015s12890 (11)	scaffold_15:13074563-13075562(+) (11)	NA	Q8LF97	SKP1-like protein 21	AT3G61415.1	SKP1-like 21 	LOC_Os03g01660.1	"SKP1, putative, expressed"	Medtr7g087490.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.213102.1.S1_at	A	A1TS	POPTR_0015s12870	POPTR_0015s12870 (11)	scaffold_15:13063271-13064152(+) (11)	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G63700.1	Protein kinase superfamily protein 	LOC_Os04g47240.3	"STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g126720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213102.1.S1_s_at	A	A2TS	POPTR_0012s12950	POPTR_0015s12870 (11)//POPTR_0012s12950 (11)	scaffold_12:13298179-13299814(+) (11)//scaffold_15:13062591-13064179(+) (11)	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G63700.1	Protein kinase superfamily protein 	LOC_Os02g44642.1	"STE_MEKK_ste11_MAP3K.10 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g126720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213103.1.S1_at	A	A1TS	POPTR_0015s12860	POPTR_0015s12860 (11)	scaffold_15:13050897-13051884(+) (11)	NA	NA	NA	AT1G02260.1	Divalent ion symporter 	LOC_Os03g05390.6	"Citrate transporter protein, putative, expressed"	Medtr8g039530.1	Citrate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213104.1.S1_at	A	A1MS	POPTR_0015s12850	POPTR_0015s12850 (11)	scaffold_15:13047522-13047918(+) (11)	NA	Q54GU0	Putative transporter arsB	AT1G02260.1	Divalent ion symporter 	LOC_Os03g05390.6	"Citrate transporter protein, putative, expressed"	Medtr8g039530.1	Citrate transporter 	GO:0015746|citrate transport	GO:0015137|citrate transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.213105.1.S1_at	A	A1MS	POPTR_0015s12840	POPTR_0015s12840 (9)	scaffold_15:13043651-13044154(+) (9)	NA	Q42538	Serine acetyltransferase 5	AT5G56760.1	serine acetyltransferase 1;1 	LOC_Os05g45710.1	"serine acetyltransferase protein, putative, expressed"	Medtr4g125940.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
PtpAffx.213106.1.S1_at	A	A1TS	POPTR_0015s12820	POPTR_0015s12820 (11)	scaffold_15:13033637-13034163(+) (11)	NA	Q94AI4	Methyltransferase-like protein 1	AT4G09980.1	Methyltransferase MT-A70 family protein 	LOC_Os10g31030.1	"EMB1691, putative, expressed"	Medtr1g126680.1	N-6 Adenine-specific DNA methylase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008168|methyltransferase activity	NA
PtpAffx.213107.1.S1_at	A	A1TS	POPTR_0015s12800	POPTR_0015s12800 (11)	scaffold_15:13016421-13016622(+) (11)	NA	Q9SMU4	UPF0496 protein At3g49070	AT3G49070.1	Protein of unknown function (DUF677) 	LOC_Os03g05440.1	"DUF677 domain containing protein, putative, expressed"	Medtr1g126660.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213109.1.S1_at	A	A1TS	POPTR_0015s12750	POPTR_0015s12750 (11)	scaffold_15:12979608-12980421(+) (11)	NA	NA	NA	AT1G58110.2	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os12g09250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213111.1.S1_at	A	A1TS	POPTR_0015s12730	POPTR_0015s12730 (11)	scaffold_15:12956350-12958590(+) (11)	NA	NA	NA	AT3G02690.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g35140.1	"integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213111.1.S1_s_at	A	A1TS	POPTR_0015s12730	POPTR_0015s12730 (11)	scaffold_15:12956240-12956363(+) (11)	NA	NA	NA	AT3G02690.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g35140.1	"integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213111.1.S1_x_at	A	A1TS	POPTR_0015s12730	POPTR_0015s12730 (11)	scaffold_15:12956278-12958590(+) (11)	NA	NA	NA	AT3G02690.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g35140.1	"integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213112.1.S1_at	A	A1TS	POPTR_0015s12710	POPTR_0015s12710 (9)	scaffold_15:12942571-12945966(+) (11)	NA	Q5RCV3	Nibrin	AT3G02680.1	nijmegen breakage syndrome 1 	LOC_Os10g34580.2	"FHA domain containing protein, putative, expressed"	Medtr5g084040.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213113.1.S1_at	A	A1TS	POPTR_0016s00670	POPTR_0016s00670 (11)	scaffold_16:230391-230767(-) (11)	NA	NA	NA	AT5G47740.2	Adenine nucleotide alpha hydrolases-like superfamily protein 	NA	NA	AC233669_2.1	hypothetical protein AC233669.2 8999-10267 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213114.1.S1_at	A	A1TS	POPTR_0016s00690	POPTR_0016s00690 (11)	scaffold_16:239701-240058(-) (11)	NA	NA	NA	AT1G12150.1	Plant protein of unknown function (DUF827) 	LOC_Os12g17310.1	"prefoldin, putative, expressed"	Medtr2g032780.1	"Protein of unknown function DUF827, plant "	GO:0016032|viral reproduction	NA	NA
PtpAffx.213116.1.S1_at	A	A1TS	POPTR_0016s00730	POPTR_0016s00730 (11)	scaffold_16:268030-269135(+) (11)	NA	O14214	tRNA (guanine-N(1)-)-methyltransferase	AT5G47680.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g49360.1	"RNA methyltransferase domain-containing protein 2, putative, expressed"	Medtr2g032680.1	tRNA (guanine-N1-)-methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213116.1.S1_x_at	A	A1TS	POPTR_0016s00730	POPTR_0016s00730 (11)	scaffold_16:267822-269135(+) (11)	NA	O14214	tRNA (guanine-N(1)-)-methyltransferase	AT5G47680.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g49360.1	"RNA methyltransferase domain-containing protein 2, putative, expressed"	Medtr2g032680.1	tRNA (guanine-N1-)-methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213117.1.S1_at	A	A1TS	POPTR_0016s00740	POPTR_0016s00740 (11)	scaffold_16:270780-272242(-) (11)	NA	Q84W66	Nuclear transcription factor Y subunit B-6	AT5G47670.1	"nuclear factor Y, subunit B6 "	LOC_Os02g49370.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr1g046630.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.213118.1.S1_at	A	A1MS	POPTR_0016s00750	POPTR_0016s00750 (11)	scaffold_16:276513-276900(+) (11)	NA	O65567	"Pentatricopeptide repeat-containing protein At4g30825, chloroplastic"	AT4G30825.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g25550.1	"pentatricopeptide, putative, expressed"	Medtr2g073980.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213119.1.S1_at	A	A1TS	POPTR_0016s00760	POPTR_0016s00760 (11)	scaffold_16:279493-279947(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT5G47660.1	Homeodomain-like superfamily protein 	LOC_Os02g43300.1	expressed protein	Medtr1g125280.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213120.1.S1_at	A	A2TS	POPTR_0016s00840	POPTR_0016s00840 (11)//POPTR_2131s00200 (9)	scaffold_16:314365-316201(-) (11)//scaffold_2131:2604-3420(-) (9)	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g14870.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150810.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.213121.1.S1_at	A	A1TS	POPTR_0016s00890	POPTR_0016s00890 (11)	scaffold_16:342232-342830(-) (11)	NA	Q8LBL1	Calcium-activated outward-rectifying potassium channel 1	AT5G55630.2	Outward rectifying potassium channel protein 	LOC_Os03g54100.2	"potassium channel protein, putative, expressed"	Medtr8g148620.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213122.1.S1_at	A	A1TS	POPTR_0016s00900	POPTR_0016s00900 (11)	scaffold_16:346244-346887(+) (11)	NA	Q9LKR4	Putative protein FAR1-RELATED SEQUENCE 10	AT5G28530.1	FAR1-related sequence 10 	LOC_Os04g36590.1	"transposon protein, putative, unclassified, expressed"	Medtr2g005160.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.213123.1.S1_at	A	A1TS	POPTR_0016s00910	POPTR_0016s00910 (11)	scaffold_16:351075-351545(-) (11)	NA	NA	NA	AT3G13130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213124.1.S1_at	A	A1TS	POPTR_0016s00930	POPTR_0016s00930 (11)	scaffold_16:359099-360147(+) (11)	NA	NA	NA	AT5G55600.3	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os07g41640.1	"agenet domain-containing protein, putative, expressed"	Medtr2g030390.1	Bromo adjacent region; Xylose isomerase; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
PtpAffx.213125.1.S1_at	A	A1TS	POPTR_0016s00950	POPTR_0016s00950 (11)	scaffold_16:368594-369273(+) (11)	NA	O81974	Cytochrome P450 71D8	AT4G13310.2	"cytochrome P450, family 71, subfamily A, polypeptide 20 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr5g018940.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213126.1.S1_at	A	A1TS	POPTR_0016s00960	POPTR_0016s00960 (11)	scaffold_16:379449-381118(+) (11)	NA	NA	NA	AT4G17240.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). 	LOC_Os05g46920.1	expressed protein	Medtr2g030560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213127.1.S1_at	A	A2TS	POPTR_0016s01000	POPTR_0777s00210 (11)//POPTR_0016s01000 (11)	scaffold_16:394803-395659(-) (11)//scaffold_777:8531-9412(-) (11)	NA	Q9H6Q4	Cytosolic Fe-S cluster assembly factor NARFL	AT4G16440.1	ferredoxin hydrogenases 	LOC_Os03g53750.1	"nuclear prelamin A recognition factor, putative, expressed"	Medtr3g162950.1	Iron hydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213129.1.S1_at	A	A1TS	POPTR_0016s01040	POPTR_0016s01040 (11)	scaffold_16:411073-411258(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g105080.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213130.1.S1_at	A	A1TS	POPTR_0016s01050	POPTR_0016s01050 (10)	scaffold_16:412189-413278(+) (10)	NA	Q9LIK7	"Putative calcium-transporting ATPase 13, plasma membrane-type"	AT3G22910.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g015270.1	"ATPase, E1-E2 type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213131.1.S1_at	A	A1TS	POPTR_0016s01060	POPTR_0016s01060 (11)	scaffold_16:414392-414737(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g030510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213133.1.S1_at	A	A1TS	POPTR_0016s01080	POPTR_0016s01080 (11)	scaffold_16:428603-428875(-) (11)	NA	Q9LF79	"Calcium-transporting ATPase 8, plasma membrane-type"	AT5G57110.2	"autoinhibited Ca2+ -ATPase, isoform 8 "	LOC_Os08g40530.2	"calcium-transporting ATPase 9, plasma membrane-type, putative, expressed"	Medtr8g015270.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.213133.1.S1_x_at	A	A1TS	POPTR_0016s01080	POPTR_0016s01080 (11)	scaffold_16:428603-429157(-) (11)	NA	Q9LF79	"Calcium-transporting ATPase 8, plasma membrane-type"	AT5G57110.2	"autoinhibited Ca2+ -ATPase, isoform 8 "	LOC_Os08g40530.2	"calcium-transporting ATPase 9, plasma membrane-type, putative, expressed"	Medtr8g015270.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.213134.1.S1_at	A	A1TS	POPTR_0016s01090	POPTR_0016s01090 (10)	scaffold_16:436930-437126(-) (10)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.213134.1.S1_x_at	A	A1TS	POPTR_0016s01090	POPTR_0016s01090 (10)	scaffold_16:436930-437196(-) (10)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.213135.1.S1_at	A	A1TS	POPTR_0016s01110	POPTR_0016s01110 (11)	scaffold_16:456353-456790(+) (11)	NA	Q9LDL7	Scarecrow-like transcription factor PAT1	AT4G17230.1	SCARECROW-like 13 	LOC_Os10g22430.1	"gibberellin response modulator protein, putative, expressed"	Medtr8g148340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213136.1.S1_at	A	A1TS	POPTR_0016s01180	POPTR_0016s01180 (11)	scaffold_16:485905-488810(+) (11)	NA	O23492	Inositol transporter 4	AT4G16480.1	inositol transporter 4 	LOC_Os04g43210.3	"transporter family protein, putative, expressed"	Medtr2g030250.1	General substrate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213137.1.S1_at	A	A1TS	POPTR_0016s01190	POPTR_0016s01190 (11)	scaffold_16:493058-493740(+) (11)	NA	O23492	Inositol transporter 4	AT4G16480.1	inositol transporter 4 	LOC_Os04g43210.3	"transporter family protein, putative, expressed"	Medtr2g030250.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.213138.1.S1_at	A	A1TS	POPTR_0016s01200	POPTR_0016s01200 (11)	scaffold_16:496430-497077(-) (11)	NA	O22193	U-box domain-containing protein 4	AT4G16490.1	ARM repeat superfamily protein 	LOC_Os07g39590.1	"spotted leaf 11, putative, expressed"	Medtr2g030200.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213139.1.S1_s_at	A	A2TS	POPTR_0001s42130	POPTR_0001s42130 (11)//POPTR_0016s01260 (11)	scaffold_1:41888841-41889459(+) (11)//scaffold_16:532807-533429(-) (11)//scaffold_1811:435-1056(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21314.1.A1_at	A	A1TS	POPTR_0001s32070	POPTR_0001s32070 (10)	scaffold_1:30497961-30498177(+) (10)	NA	NA	NA	AT3G55570.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g12190.1	expressed protein	Medtr5g088030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213140.1.S1_at	A	A1MS	POPTR_0016s01290	POPTR_0016s01290 (11)	scaffold_16:564751-565445(+) (11)	POPTR_1063s00210 (6)	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT1G17230.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g05740.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213141.1.S1_s_at	A	A2TS	POPTR_0001s43770	POPTR_0004s17210 (11)//POPTR_0001s43770 (11)	scaffold_1:44096756-44097035(+) (11)//scaffold_16:535627-535906(-) (11)//scaffold_18:2892172-2892449(+) (10)//scaffold_4:17527487-17527766(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213142.1.S1_at	A	A1TS	POPTR_0016s01270	POPTR_0016s01270 (11)	scaffold_16:540847-541796(+) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213143.1.S1_at	A	A2TS	POPTR_0067s00290	POPTR_0067s00290 (11)//POPTR_0067s00300 (11)	scaffold_1184:2552-2772(+) (9)//scaffold_67:80338-80817(-) (11)//scaffold_67:89413-89892(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213144.1.S1_at	A	A2TS	POPTR_0067s00310	POPTR_0067s00310 (11)//POPTR_0067s00260 (10)	scaffold_67:50904-50945(-) (10)//scaffold_67:91091-91154(-) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213144.1.S1_x_at	A	A1TS	POPTR_0067s00310	POPTR_0067s00310 (11)	scaffold_67:91073-91254(-) (11)	POPTR_0067s00260 (7)	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213145.1.S1_at	A	A1MS	POPTR_0016s01340	POPTR_0016s01340 (11)	scaffold_16:591623-592468(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213146.1.S1_at	A	A1TS	POPTR_0016s01340	POPTR_0016s01340 (9)	scaffold_16:590274-591273(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213147.1.S1_at	A	A1TS	POPTR_0016s01370	POPTR_0016s01370 (10)	scaffold_16:612466-613551(-) (10)	NA	NA	NA	AT1G29730.1	Leucine-rich repeat transmembrane protein kinase 	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.213148.1.S1_at	A	A1TS	POPTR_0016s01390	POPTR_0016s01390 (11)	scaffold_16:631803-632786(+) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr2g033620.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213149.1.S1_x_at	A	A1TS	POPTR_0016s01400	POPTR_0016s01400 (9)	scaffold_16:635111-635647(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213150.1.S1_at	A	A1TS	POPTR_0016s01410	POPTR_0016s01410 (11)	scaffold_16:639613-640129(+) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27570.1	"OsFBA3 - F-box and FBA domain containing protein, expressed"	Medtr2g029930.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213151.1.S1_at	A	A1TS	POPTR_0016s01420	POPTR_0016s01420 (11)	scaffold_16:641698-642217(-) (11)	NA	Q6Z8C8	Cyclin-dependent kinase F-4	AT4G19110.2	Protein kinase superfamily protein 	LOC_Os06g02550.2	"CPuORF21 - conserved peptide uORF-containing transcript, expressed"	Medtr5g027190.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213152.1.S1_at	A	A1TS	POPTR_0016s01430	POPTR_0016s01430 (10)	scaffold_16:647227-647326(+) (10)	NA	Q9SU29	E3 ubiquitin-protein ligase UPL5	AT4G12570.1	ubiquitin protein ligase 5 	LOC_Os09g31090.2	"HECT-domain domain containing protein, expressed"	Medtr8g147800.1	HECT; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.213152.1.S1_x_at	A	A1TS	POPTR_0016s01430	POPTR_0016s01430 (10)	scaffold_16:647208-647352(+) (10)	NA	Q9SU29	E3 ubiquitin-protein ligase UPL5	AT4G12570.1	ubiquitin protein ligase 5 	LOC_Os09g31090.2	"HECT-domain domain containing protein, expressed"	Medtr8g147800.1	HECT; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.213153.1.S1_at	A	A1TS	POPTR_0016s01480	POPTR_0016s01480 (11)	scaffold_16:672138-674135(+) (11)	NA	NA	NA	AT4G22370.1	unknown protein; Has 12 Blast hits to 12 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g029820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213155.1.S1_at	A	A1MS	POPTR_0016s01540	POPTR_0016s01540 (10)	scaffold_16:701217-701566(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213156.1.S1_at	A	A1TS	POPTR_0016s01550	POPTR_0016s01550 (11)	scaffold_16:705173-706988(+) (11)	NA	Q8GY84	DEAD-box ATP-dependent RNA helicase 10	AT5G60990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g46610.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC146793_9.1	"Helicase, C-terminal; ; AC146793.7 47553-38999 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.213158.1.S1_at	A	A1TS	POPTR_0016s01650	POPTR_0016s01650 (11)	scaffold_16:750962-752163(-) (11)	NA	Q0DCM5	"Mannan endo-1,4-beta-mannosidase 6"	AT2G20680.1	Glycosyl hydrolase superfamily protein 	LOC_Os06g20620.1	"OsMan07 - Endo-Beta-Mannanase, expressed"	Medtr4g107960.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213160.1.S1_at	A	A1TS	POPTR_0016s01690	POPTR_0016s01690 (11)	scaffold_16:765800-766626(-) (11)	NA	Q9T076	Early nodulin-like protein 2	AT3G27200.1	Cupredoxin superfamily protein 	LOC_Os02g48820.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr2g029640.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.213161.1.S1_at	A	A1TS	POPTR_0016s01700	POPTR_0016s01700 (11)	scaffold_16:769907-770414(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213162.1.S1_at	A	A1TS	POPTR_0016s01710	POPTR_0016s01710 (11)	scaffold_16:772082-772316(-) (11)	NA	O81148	Proteasome subunit alpha type-4	AT3G22110.1	20S proteasome alpha subunit C1 	LOC_Os06g07140.1	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.213162.1.S1_x_at	A	A1TS	POPTR_0016s01710	POPTR_0016s01710 (11)	scaffold_16:772082-772337(-) (11)	NA	O81148	Proteasome subunit alpha type-4	AT3G22110.1	20S proteasome alpha subunit C1 	LOC_Os06g07140.1	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.213163.1.S1_a_at	A	A1TA	POPTR_0016s01720	POPTR_0016s01720 (11)	scaffold_16:778067-778109(+) (11)//scaffold_16:778127-778214(+) (11)//scaffold_16:778193-778271(+) (11)//scaffold_16:778250-778328(+) (11)//scaffold_16:778307-778400(+) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g52250.1	"LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213163.1.S1_x_at	A	A1TA	POPTR_0016s01720	POPTR_0016s01720 (9)	scaffold_16:777989-779222(+) (9)	NA	P14009	14 kDa proline-rich protein DC2.15	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g52250.1	"LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213164.1.S1_at	A	A1TS	POPTR_0016s01730	POPTR_0016s01730 (11)	scaffold_16:788813-789767(-) (11)	NA	Q9M1H3	ABC transporter F family member 4	AT3G54540.1	general control non-repressible 4 	LOC_Os03g32630.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g089230.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213166.1.S1_at	A	A1TS	POPTR_0016s01910	POPTR_0016s01910 (11)	scaffold_16:875884-876747(-) (11)	NA	NA	NA	AT3G02960.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g32030.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150810.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.213167.1.S1_at	A	A1TS	POPTR_0016s01920	POPTR_0016s01920 (11)	scaffold_16:878081-879548(-) (11)	NA	O23038	Probable pectinesterase 8	AT1G05310.1	Pectin lyase-like superfamily protein 	LOC_Os08g10604.1	"pectinesterase, putative, expressed"	Medtr7g111450.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.213168.1.S1_at	A	A1TS	POPTR_0016s01930	POPTR_0016s01930 (11)	scaffold_16:882206-883333(+) (11)	NA	P0C043	Putative pentatricopeptide repeat-containing protein At4g17915	AT5G46680.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os02g55020.1	"uncharacterized PPR-repeat protein, putative, expressed"	Medtr7g025500.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213169.1.S1_at	A	A1TS	POPTR_0016s01950	POPTR_0016s01950 (11)	scaffold_16:894958-895843(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os02g51930.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213172.1.S1_at	A	A1TS	POPTR_0016s01970	POPTR_0016s01970 (11)	scaffold_16:904980-905980(-) (11)	NA	Q9SWG3	Protein FAR-RED IMPAIRED RESPONSE 1	AT4G15090.1	FRS (FAR1 Related Sequences) transcription factor family 	NA	NA	Medtr3g098370.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213173.1.S1_at	A	A1TS	POPTR_0016s02010	POPTR_0016s02010 (11)	scaffold_16:935962-936450(+) (11)	NA	Q9SJR0	Ethylene-responsive transcription factor ERF024	AT2G36450.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g46400.1	"AP2 domain containing protein, expressed"	Medtr5g012990.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.213174.1.S1_at	A	A1TS	POPTR_0016s02020	POPTR_0016s02020 (11)	scaffold_16:954112-954585(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
PtpAffx.213174.1.S1_x_at	A	A1TS	POPTR_0016s02020	POPTR_0016s02020 (11)	scaffold_16:954112-954690(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
PtpAffx.213175.1.S1_at	A	A1TS	POPTR_0016s02030	POPTR_0016s02030 (11)	scaffold_16:966473-966940(-) (11)	NA	Q9FHZ1	Scarecrow-like protein 23	AT5G41920.1	GRAS family transcription factor 	LOC_Os07g38030.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g103580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213176.1.S1_at	A	A1TS	POPTR_0016s02060	POPTR_0016s02060 (11)	scaffold_16:982540-984126(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213177.1.S1_at	A	A1TS	POPTR_0016s02070	POPTR_0016s02070 (11)	scaffold_16:990768-990956(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G22250.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g44354.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g106600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213177.1.S1_s_at	A	A1TS	POPTR_0016s02070	POPTR_0016s02070 (11)	scaffold_16:990489-990839(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G22250.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g44354.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g106600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213178.1.S1_at	A	A1TS	POPTR_0016s02120	POPTR_0016s02120 (11)	scaffold_16:1020159-1020509(-) (11)	NA	Q9SUN3	Probable UDP-arabinose 4-epimerase 3	AT4G20460.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g03570.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr4g137730.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.213179.1.S1_a_at	A	A3TS	POPTR_0016s02150	POPTR_0016s02150 (11)//POPTR_0098s00240 (11)//POPTR_0098s00270 (9)	scaffold_16:1040294-1040371(+) (11)//scaffold_98:16265-16342(+) (11)//scaffold_98:31310-31387(+) (9)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr6g014590.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213179.1.S1_at	A	A1TS	POPTR_0098s00240	POPTR_0098s00240 (11)	scaffold_98:17401-17782(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213180.1.S1_s_at	A	A3TS	POPTR_0016s02160	POPTR_0016s02160 (11)//POPTR_0098s00280 (11)//POPTR_0098s00210 (11)	scaffold_16:1043977-1044464(-) (11)//scaffold_98:3354-3841(-) (11)//scaffold_98:39371-39858(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213181.1.S1_at	A	A1TS	POPTR_0098s00300	POPTR_0098s00300 (9)	scaffold_98:48152-48487(-) (9)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213185.1.S1_at	A	A1MS	POPTR_0016s02290	POPTR_0016s02290 (9)	scaffold_16:1113328-1114343(+) (9)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213187.1.S1_at	A	A1TS	POPTR_0016s02340	POPTR_0016s02340 (11)	scaffold_16:1152175-1153001(-) (11)	NA	Q0D8N0	DEAD-box ATP-dependent RNA helicase 53	AT3G22310.1	putative mitochondrial RNA helicase 1 	LOC_Os07g05050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g097200.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.213188.1.S1_at	A	A1TS	POPTR_0016s02380	POPTR_0016s02380 (11)	scaffold_16:1173298-1173947(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g009920.3	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213190.1.S1_at	A	A1TS	POPTR_0016s02410	POPTR_0016s02410 (11)	scaffold_16:1189175-1190001(+) (11)	NA	Q3MG79	Putative ribosome biogenesis GTPase RsgA	AT1G67440.1	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os04g31270.1	"EMB1688, putative, expressed"	Medtr3g103630.1	GTPase EngC 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.213191.1.S1_at	A	A1TS	POPTR_0016s02420	POPTR_0016s02420 (11)	scaffold_16:1192252-1192774(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213192.1.S1_at	A	A1TS	POPTR_0016s02460	POPTR_0016s02460 (11)	scaffold_16:1211116-1212649(+) (11)	NA	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os05g41070.1	"bZIP transcription factor, putative, expressed"	Medtr7g104860.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.213193.1.S1_at	A	A1TS	POPTR_0016s02470	POPTR_0016s02470 (11)	scaffold_16:1214482-1214770(-) (11)	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213194.1.S1_at	A	A1TS	POPTR_0016s02500	POPTR_0016s02500 (11)	scaffold_16:1235404-1236472(+) (11)	NA	Q94BZ1	Protein ZINC INDUCED FACILITATOR-LIKE 1	AT5G13750.1	zinc induced facilitator-like 1 	LOC_Os11g04020.1	"major facilitator superfamily antiporter, putative, expressed"	Medtr8g073830.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213195.1.S1_at	A	A1TS	POPTR_0016s02520	POPTR_0016s02520 (11)	scaffold_16:1244382-1244973(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g20350.1	conserved hypothetical protein	Medtr7g104760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213195.1.S1_x_at	A	A1TS	POPTR_0016s02520	POPTR_0016s02520 (11)	scaffold_16:1244382-1245006(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g20350.1	conserved hypothetical protein	Medtr7g104760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213196.1.S1_at	A	A1TS	POPTR_0016s02580	POPTR_0016s02580 (11)	scaffold_16:1270559-1272369(-) (11)	NA	Q9M1K5	Probable S-acyltransferase At3g56930	AT3G56930.1	DHHC-type zinc finger family protein 	LOC_Os12g03730.1	"zinc finger DHHC domain-containing protein, putative"	Medtr7g105150.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.213197.1.S1_at	A	A1TS	POPTR_0016s02590	POPTR_0016s02590 (11)	scaffold_16:1277614-1278358(-) (11)	NA	Q5PNZ1	Probable S-acyltransferase At5g05070	AT5G05070.1	DHHC-type zinc finger family protein 	LOC_Os12g03730.1	"zinc finger DHHC domain-containing protein, putative"	Medtr7g105170.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.213200.1.S1_at	A	A1TS	POPTR_0016s02650	POPTR_0016s02650 (11)	scaffold_16:1310878-1311088(+) (11)	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr2g030470.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213202.1.S1_at	A	A1TS	POPTR_0016s02670	POPTR_0016s02670 (11)	scaffold_16:1326804-1327055(+) (11)	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213203.1.S1_at	A	A1TS	POPTR_0016s02700	POPTR_0016s02700 (11)	scaffold_16:1341314-1341405(+) (11)	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213205.1.S1_at	A	A1MS	POPTR_0016s02770	POPTR_0016s02770 (11)	scaffold_16:1375024-1375331(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os03g52310.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.213206.1.S1_at	A	A1TS	POPTR_0016s02780	POPTR_0016s02780 (11)	scaffold_16:1378369-1378949(-) (11)	NA	Q84WP6	NAC domain-containing protein 43	AT3G17730.1	NAC domain containing protein 57 	LOC_Os09g38010.2	"no apical meristem protein, putative, expressed"	Medtr7g143100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.213207.1.S1_at	A	A1TS	POPTR_0016s02800	POPTR_0016s02800 (11)	scaffold_16:1389942-1390366(+) (11)	NA	Q39262	Zinc finger protein 3	AT5G10970.1	C2H2 and C2HC zinc fingers superfamily protein 	NA	NA	Medtr3g138050.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.213208.1.S1_at	A	A1TS	POPTR_0016s02810	POPTR_0016s02810 (11)	scaffold_16:1399123-1400295(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213209.1.S1_at	A	A1TS	POPTR_0016s02820	POPTR_0016s02820 (11)	scaffold_16:1401200-1401636(-) (11)	NA	Q9LSX9	SKP1-like protein 9	AT3G21850.1	SKP1-like 9 	LOC_Os09g36830.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr2g077590.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.213211.1.S1_at	A	A1TS	POPTR_0016s02840	POPTR_0016s02840 (11)	scaffold_16:1406322-1406840(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213212.1.S1_at	A	A1TS	POPTR_0016s02860	POPTR_0016s02860 (11)	scaffold_1517:1598-1861(-) (9)//scaffold_16:1411517-1412109(+) (11)//scaffold_172:35827-36172(-) (10)//scaffold_7:4951703-4952048(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213213.1.S1_at	A	A1TS	POPTR_0016s02900	POPTR_0016s02900 (11)	scaffold_16:1450559-1450940(+) (11)	NA	Q62383	Transcription elongation factor SPT6	AT1G65440.2	global transcription factor group B1 	LOC_Os05g41510.1	"SH2 motif, putative, expressed"	Medtr7g105590.1	"Alcohol dehydrogenase, zinc-containing; RNA binding S1; Resolvase, RNase H-like fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213214.1.S1_at	A	A1TS	POPTR_0016s02920	POPTR_0016s02920 (11)	scaffold_16:1459109-1459583(-) (11)	NA	NA	NA	AT2G41020.1	WW domain-containing protein 	LOC_Os01g68760.1	"WW domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213215.1.S1_at	A	A1TS	POPTR_0016s02930	POPTR_0016s02930 (11)	scaffold_16:1462300-1462777(-) (11)	NA	Q9LXY5	Pentatricopeptide repeat-containing protein At3g56550	AT3G56550.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g05560.1	conserved hypothetical protein	Medtr2g074200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213216.1.S1_at	A	A1MS	POPTR_0016s02960	POPTR_0016s02960 (11)	scaffold_16:1493410-1493901(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47580.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g49920.1	"protein kinase, putative, expressed"	AC159090_19.1	Tyrosine protein kinase AC159090.17 97367-93437 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213217.1.S1_at	A	A1TS	POPTR_0016s02980	POPTR_0016s02980 (9)	scaffold_16:1501878-1502316(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g49920.1	"protein kinase, putative, expressed"	AC159090_19.1	Tyrosine protein kinase AC159090.17 97367-93437 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213218.1.S1_at	A	A1TS	POPTR_0016s03010	POPTR_0016s03010 (11)	scaffold_16:1513313-1513744(-) (11)	NA	NA	NA	AT5G45790.2	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os02g26550.3	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr7g105350.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213219.1.S1_at	A	A1TS	POPTR_0016s03030	POPTR_0016s03030 (10)	scaffold_16:1526436-1527012(+) (10)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	NA	NA	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	"GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides""||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding"	NA
PtpAffx.213220.1.S1_at	A	A1TS	POPTR_0016s03040	POPTR_0016s03040 (11)	scaffold_16:1529886-1530419(+) (11)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	NA	NA	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	"GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides""||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding"	NA
PtpAffx.213221.1.S1_at	A	A1TS	POPTR_0016s03050	POPTR_0016s03050 (11)	scaffold_16:1531480-1532256(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213222.1.S1_at	A	A1TS	POPTR_0016s03060	POPTR_0016s03060 (11)	scaffold_16:1532361-1533966(-) (11)	NA	Q940A2	Protein kinase and PP2C-like domain-containing protein	AT2G40860.1	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein 	LOC_Os01g36080.2	"protein phosphatase 2C containing protein, expressed"	Medtr1g068720.1	Tyrosine protein kinase; Protein phosphatase 2C-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213224.1.S1_at	A	A1TS	POPTR_0016s03140	POPTR_0016s03140 (11)	scaffold_16:1587648-1588127(-) (11)	NA	Q08891	Fatty acyl-CoA reductase 2	AT3G11980.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os03g07140.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213225.1.S1_s_at	A	A1TS	POPTR_0016s03170	POPTR_0016s03170 (11)	scaffold_16:1609784-1610741(-) (11)	NA	O22207	Ubiquitin carboxyl-terminal hydrolase 5	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.213226.1.S1_at	A	A1TS	POPTR_0016s03180	POPTR_0016s03180 (11)	scaffold_16:1618268-1618838(-) (11)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	LOC_Os05g33960.1	"peptide transporter PTR2, putative, expressed"	Medtr7g105690.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.213227.1.S1_at	A	A1TS	POPTR_0016s03190	POPTR_0016s03190 (11)	scaffold_16:1631637-1632121(-) (11)	NA	Q9LXX6	Probable exocyst complex component 6	AT3G56640.1	exocyst complex component sec15A 	LOC_Os03g06760.2	"exocyst complex component 6, putative, expressed"	Medtr1g107350.1	Exocyst complex subunit Sec15-like 	GO:0006904|vesicle docking during exocytosis	NA	GO:0000145|exocyst
PtpAffx.213228.1.S1_s_at	A	A2TS	POPTR_0016s03260	POPTR_0016s03260 (11)//POPTR_0016s03210 (10)	scaffold_16:1638054-1638356(+) (10)//scaffold_16:1668947-1669249(-) (11)	NA	Q148K0	Transcription elongation factor A protein 2	AT2G38560.1	transcript elongation factor IIS 	LOC_Os03g60130.2	"transcription elongation factor protein, putative, expressed"	Medtr3g136140.1	"Transcription elongation factor S-II, central region; SPOC "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.213229.1.S1_at	A	A1TS	POPTR_0016s03270	POPTR_0016s03270 (11)	scaffold_16:1673300-1673978(-) (11)	NA	Q6R8G7	Phosphate transporter PHO1 homolog 3	AT1G14040.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.213233.1.S1_at	A	A1TS	POPTR_0311s00200	POPTR_0311s00200 (11)	scaffold_311:33630-33819(-) (11)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0008270|zinc ion binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.213233.1.S1_x_at	A	A1TS	POPTR_0311s00200	POPTR_0311s00200 (11)	scaffold_311:33630-33939(-) (11)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0008270|zinc ion binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.213234.1.S1_at	A	A1MS	POPTR_0016s03390	POPTR_0016s03390 (10)	scaffold_16:1756542-1757014(+) (11)//scaffold_16:2771805-2772278(-) (11)	POPTR_0016s04660 (7)	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.213236.1.S1_s_at	A	A1TS	POPTR_0016s03330	POPTR_0016s03330 (11)	scaffold_16:1728842-1729311(-) (11)//scaffold_3103:40-511(-) (11)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.213240.1.S1_at	A	A1MS	POPTR_0016s03340	POPTR_0016s03340 (9)	scaffold_16:1734968-1735700(-) (9)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.213240.1.S1_s_at	A	A2TS	POPTR_0016s03340	POPTR_0016s03340 (11)//POPTR_0311s00200 (11)	scaffold_16:1734989-1735718(-) (11)//scaffold_311:34420-35151(-) (11)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.213241.1.S1_at	A	A1TS	POPTR_0016s03350	POPTR_0016s03350 (11)	scaffold_16:1737234-1737557(-) (11)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0008270|zinc ion binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.213241.1.S1_s_at	A	A1TS	POPTR_0016s03350	POPTR_0016s03350 (11)	scaffold_16:1732861-1737755(-) (11)	POPTR_0311s00210 (7)	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0008270|zinc ion binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.213242.1.S1_at	A	A1TS	POPTR_0016s03350	POPTR_0016s03350 (11)	scaffold_16:1739696-1740005(-) (11)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0008270|zinc ion binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.213243.1.S1_at	A	A1TS	POPTR_0016s03380	POPTR_0016s03380 (11)	scaffold_16:1750778-1751158(+) (11)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213244.1.S1_at	A	A1TS	POPTR_0016s04650	POPTR_0016s04650 (11)	scaffold_16:1759464-1759668(+) (10)//scaffold_16:2769117-2769323(-) (11)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os04g32540.1	"OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213245.1.S1_at	A	A1TS	POPTR_0016s03420	POPTR_0016s03420 (11)	scaffold_16:1796254-1796953(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213246.1.S1_at	A	A1TS	POPTR_0016s03430	POPTR_0016s03430 (11)	scaffold_16:1801369-1802706(-) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os01g16350.2	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr7g106380.1	Pyruvate carboxyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213247.1.S1_s_at	A	A1TS	POPTR_0016s03470	POPTR_0016s03470 (11)	scaffold_16:1853228-1854096(+) (11)	NA	Q10KY3	Calcium/calmodulin-dependent serine/threonine-protein kinase 1	AT2G41140.1	CDPK-related kinase 1 	LOC_Os07g44710.1	"CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr7g106490.1	Protein kinase; EF-Hand type 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213248.1.S1_at	A	A1TS	POPTR_0016s03510	POPTR_0016s03510 (11)	scaffold_16:1877101-1878692(-) (11)	NA	Q6NLB1	F-box protein At2g26850	AT2G26850.1	F-box family protein 	LOC_Os01g17390.1	"OsFBX5 - F-box domain containing protein, expressed"	Medtr5g096190.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213249.1.S1_at	A	A1TS	POPTR_0016s03530	POPTR_0016s03530 (10)	scaffold_16:1892078-1892728(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g068400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213250.1.S1_at	A	A1TS	POPTR_0016s03550	POPTR_0016s03550 (11)	scaffold_16:1903207-1903556(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213251.1.S1_at	A	A1TS	POPTR_0016s03610	POPTR_0016s03610 (9)	scaffold_16:1954470-1958163(-) (11)	NA	Q9LHK1	"Nudix hydrolase 16, mitochondrial"	AT3G12600.2	nudix hydrolase homolog 16 	LOC_Os03g59580.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g043270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.213252.1.S1_at	A	A1TS	POPTR_0016s03620	POPTR_0016s03620 (11)	scaffold_16:1963161-1964083(+) (11)	NA	Q9M1K2	Phosphatidylinositol-4-phosphate 5-kinase 4	AT3G56960.1	phosphatidyl inositol monophosphate 5 kinase 4 	LOC_Os07g46490.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr1g068490.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.213253.1.S1_at	A	A1TS	POPTR_0016s03630	POPTR_0016s03630 (11)	scaffold_16:1984700-1985856(+) (11)	NA	Q9ZNZ7	"Ferredoxin-dependent glutamate synthase 1, chloroplastic"	AT5G04140.1	glutamate synthase 1 	LOC_Os07g46460.1	"ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0015930|glutamate synthase activity	NA
PtpAffx.213253.1.S1_x_at	A	A1TS	POPTR_0016s03630	POPTR_0016s03630 (11)	scaffold_16:1984700-1985856(+) (11)	NA	Q9ZNZ7	"Ferredoxin-dependent glutamate synthase 1, chloroplastic"	AT5G04140.1	glutamate synthase 1 	LOC_Os07g46460.1	"ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0015930|glutamate synthase activity	NA
PtpAffx.213254.1.S1_at	A	A1TS	POPTR_0016s03720	POPTR_0016s03720 (11)	scaffold_16:2070940-2071178(-) (11)	NA	P92976	Strictosidine synthase 3	AT2G41290.1	strictosidine synthase-like 2 	LOC_Os12g04424.1	"strictosidine synthase, putative, expressed"	Medtr7g107350.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.213255.1.S1_s_at	A	A1TS	POPTR_0016s03750	POPTR_0016s03750 (11)	scaffold_16:2102907-2103639(+) (11)	NA	O80366	Two-component response regulator ARR9	AT3G57040.1	response regulator 9 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g039500.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.213257.1.S1_at	A	A1TS	POPTR_0016s03790	POPTR_0016s03790 (11)	scaffold_16:2128280-2128818(+) (11)	NA	O64766	"Pentatricopeptide repeat-containing protein At2g35030, mitochondrial"	AT2G35030.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g24530.1	"pentatricopeptide, putative, expressed"	Medtr1g046540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213258.1.S1_at	A	A1TS	POPTR_0016s03850	POPTR_0016s03850 (11)	scaffold_16:2149644-2150187(+) (11)	NA	Q6A4L0	Solute carrier family 22 member 13	AT1G16390.1	organic cation/carnitine transporter 3 	LOC_Os07g37510.1	"organic cation transporter-related, putative"	Medtr8g042900.1	Major facilitator superfamily MFS_1 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.213259.1.S1_at	A	A2TS	POPTR_0016s03880	POPTR_0016s03890 (11)//POPTR_0016s03880 (11)	scaffold_16:2163408-2163969(+) (11)//scaffold_16:2169726-2170287(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os05g15230.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213260.1.S1_at	A	A1TS	POPTR_0016s03895	POPTR_0016s03895 (11)	scaffold_16:2174106-2174390(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g02820.1	plant protein of unknown function domain containing protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213261.1.S1_at	A	A1TS	POPTR_0016s03930	POPTR_0016s03930 (11)	scaffold_1242:2026-2380(+) (11)//scaffold_16:2196580-2196934(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213262.1.S1_s_at	A	A1TS	POPTR_0016s03900	POPTR_0016s03900 (11)	scaffold_16:2179043-2179351(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213263.1.S1_x_at	A	A1TS	POPTR_0016s03950	POPTR_0016s03950 (11)	scaffold_16:2179650-2185975(+) (11)//scaffold_16:2215223-2215816(+) (11)	POPTR_0016s03910 (8)	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38190.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067490.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213265.1.S1_at	A	A1TS	POPTR_0856s00200	POPTR_0856s00200 (11)	scaffold_856:176-690(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G47250.3	Plant protein of unknown function (DUF247) 	LOC_Os11g33430.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093520.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213266.1.S1_at	A	A1TS	POPTR_1686s00200	POPTR_1686s00200 (11)	scaffold_1686:2529-2988(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38190.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213267.1.S1_at	A	A1TS	POPTR_2419s00200	POPTR_2419s00200 (10)	scaffold_2419:1423-1872(-) (10)	POPTR_0016s03970 (7)	Q9SD53	UPF0481 protein At3g47200	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os05g15230.1	"plant protein of unknown function domain containing protein, expressed"	Medtr8g040220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213268.1.S1_s_at	A	A1TS	POPTR_0016s03980	POPTR_0016s03980 (11)	scaffold_16:2227251-2227611(-) (11)	NA	Q43415	"Lycopene beta cyclase, chloroplastic/chromoplastic"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr7g107170.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.213268.1.S1_x_at	A	A1TS	POPTR_0016s03980	POPTR_0016s03980 (11)	scaffold_16:2227253-2227825(-) (11)	NA	Q43415	"Lycopene beta cyclase, chloroplastic/chromoplastic"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr7g107170.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.213271.1.S1_at	A	A1TS	POPTR_0016s04050	POPTR_0016s04050 (11)	scaffold_16:2310282-2310509(-) (11)	NA	Q9LZA6	Triacylglycerol lipase SDP1	AT5G04040.1	Patatin-like phospholipase family protein 	LOC_Os01g55650.1	"phospholipase, patatin family, putative, expressed"	Medtr7g107500.1	Patatin; ARF/SAR superfamily 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.213272.1.S1_at	A	A1TS	POPTR_0016s04060	POPTR_0016s04060 (9)	scaffold_16:2320572-2321098(+) (9)	NA	NA	NA	AT5G04020.1	calmodulin binding 	LOC_Os01g72190.1	expressed protein	Medtr7g107540.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213273.1.S1_at	A	A1TS	POPTR_0016s04070	POPTR_0016s04070 (11)	scaffold_16:2323624-2324360(-) (11)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.213274.1.S1_at	A	A1TS	POPTR_0016s04090	POPTR_0016s04090 (11)	scaffold_16:2329040-2330398(-) (11)	NA	O14357	N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein gpi1	AT3G57170.1	N-acetylglucosaminyl transferase component family protein / Gpi1 family protein 	LOC_Os05g22370.2	"N-acetylglucosaminyl transferase component, putative, expressed"	Medtr7g107670.1	N-acetylglucosaminyl transferase component 	GO:0006506|GPI anchor biosynthetic process	GO:0017176|phosphatidylinositol N-acetylglucosaminyltransferase activity	GO:0016021|integral to membrane
PtpAffx.213275.1.S1_at	A	A1TS	POPTR_0016s04120	POPTR_0016s04120 (10)	scaffold_16:2341204-2342965(-) (10)	NA	NA	NA	AT3G57180.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g30380.1	"GTP binding protein, putative, expressed"	Medtr7g107700.1	"GTP-binding protein, HSR1-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213276.1.S1_at	A	A1MS	POPTR_0016s04130	POPTR_0016s04130 (11)	scaffold_16:2343881-2344055(+) (11)	NA	Q05932	"Folylpolyglutamate synthase, mitochondrial"	AT3G10160.1	DHFS-FPGS homolog C 	LOC_Os03g02030.1	"folylpolyglutamate synthase, mitochondrial precursor, putative, expressed"	Medtr5g088540.1	Folylpolyglutamate synthetase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213278.1.S1_at	A	A1TS	POPTR_0016s04170	POPTR_0016s04170 (10)	scaffold_16:2380525-2381141(-) (11)	NA	O22212	U4/U6 small nuclear ribonucleoprotein PRP4-like protein	AT2G41500.1	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related 	LOC_Os03g23909.1	"vegetative incompatibility protein HET-E-1, putative"	Medtr5g022590.1	Splicing factor motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213279.1.S1_at	A	A1TS	POPTR_0016s04170	POPTR_0016s04170 (11)	scaffold_16:2382314-2382525(-) (11)	NA	O22212	U4/U6 small nuclear ribonucleoprotein PRP4-like protein	AT2G41500.1	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related 	LOC_Os03g23909.1	"vegetative incompatibility protein HET-E-1, putative"	Medtr5g022590.1	Splicing factor motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213280.1.S1_at	A	A1TS	POPTR_0016s04190	POPTR_0016s04190 (11)	scaffold_16:2395945-2396531(+) (11)	NA	Q9SR79	Probable inactive purple acid phosphatase 16	AT3G10150.1	purple acid phosphatase 16 	LOC_Os01g71420.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.213281.1.S1_at	A	A1TS	POPTR_0016s04195	POPTR_0016s04195 (11)	scaffold_16:2400945-2401114(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213282.1.S1_at	A	A1TS	POPTR_0016s04200	POPTR_0016s04200 (10)	scaffold_16:2404301-2405385(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT5G03960.1	IQ-domain 12 	LOC_Os03g23960.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr4g118520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213283.1.S1_at	A	A1MS	POPTR_0016s04210	POPTR_0016s04210 (11)	scaffold_16:2406572-2408122(-) (11)	NA	P36401	"Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q'"	AT3G57240.1	"beta-1,3-glucanase 3 "	LOC_Os05g31140.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g038550.2	"Glycoside hydrolase, family 17; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.213284.1.S1_at	A	A1TS	POPTR_0016s04220	POPTR_0016s04220 (11)	scaffold_16:2416819-2417322(+) (11)	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213285.1.S1_at	A	A1TS	POPTR_0016s04250	POPTR_0016s04250 (11)	scaffold_16:2441570-2444066(-) (11)	NA	Q96K37	Solute carrier family 35 member E1	AT5G04160.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr5g088980.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213286.1.S1_at	A	A1TS	POPTR_0016s04260	POPTR_0016s04260 (11)	scaffold_16:2453311-2453758(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g108250.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006353|transcription termination	GO:0003715|transcription termination factor activity	NA
PtpAffx.213287.1.S1_at	A	A1TS	POPTR_0016s04280	POPTR_0016s04280 (11)	scaffold_16:2462165-2463208(-) (11)	NA	Q8RXS6	DNA helicase INO80 complex homolog 1	AT3G57300.1	INO80 ortholog 	LOC_Os03g22900.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.213288.1.S1_s_at	A	A1TS	POPTR_0016s04300	POPTR_0016s04300 (11)	scaffold_16:2486664-2487429(-) (11)	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT4G20990.1	alpha carbonic anhydrase 4 	LOC_Os08g36630.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213289.1.S1_at	A	A1TS	POPTR_0016s04320	POPTR_0016s04320 (11)	scaffold_16:2497813-2500634(-) (11)	NA	Q5R8D8	DnaJ homolog subfamily C member 7	AT2G41520.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.213290.1.S1_at	A	A1TS	POPTR_0016s04340	POPTR_0016s04340 (11)	scaffold_16:2511328-2512048(-) (11)	NA	O22213	Cytokinin dehydrogenase 1	AT2G41510.1	cytokinin oxidase/dehydrogenase 1 	LOC_Os05g31040.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr4g118430.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
PtpAffx.213291.1.S1_at	A	A1TS	POPTR_0016s04370	POPTR_0016s04370 (11)	scaffold_16:2555473-2555945(+) (11)	NA	NA	NA	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g49480.1	"legume lectins beta domain containing protein, putative"	Medtr5g024990.1	Concanavalin A-like lectin/glucanase; Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213292.1.S1_at	A	A1TS	POPTR_0016s04760	POPTR_0016s04760 (9)	scaffold_16:2845740-2853764(-) (10)//scaffold_16:2853743-2861878(-) (9)	POPTR_0016s04380 (7)//POPTR_0016s04780 (6)	NA	NA	AT5G22355.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g42070.1	"DC1 domain-containing protein, putative, expressed"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.213293.1.S1_at	A	A1TS	POPTR_0016s04410	POPTR_0016s04410 (11)	scaffold_16:2596986-2599543(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os02g48210.1	"lectin-like protein kinase, putative, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213294.1.S1_at	A	A1TS	POPTR_0016s04420	POPTR_0016s04420 (11)	scaffold_16:2600765-2601871(-) (11)	NA	Q7YR70	Angio-associated migratory cell protein	AT1G71840.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g48090.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g089240.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213295.1.S1_at	A	A1TS	POPTR_0016s04440	POPTR_0016s04440 (11)	scaffold_16:2607812-2608932(-) (11)	NA	P93740	"Nudix hydrolase 23, chloroplastic"	AT2G42070.1	nudix hydrolase homolog 23 	LOC_Os09g38040.1	"hydrolase, NUDIX family protein, expressed"	Medtr7g111980.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.213297.1.S1_at	A	A1TS	POPTR_0016s04510	POPTR_0016s04510 (11)	scaffold_16:2646259-2648296(-) (11)	NA	O48520	DNA polymerase delta small subunit	AT2G42120.2	DNA polymerase delta small subunit 	LOC_Os03g03650.1	"POLD2 - Putative DNA polymerase delta complex subunit, expressed"	Medtr7g111910.1	DNA polymerase epsilon subunit B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.213298.1.S1_at	A	A1TS	POPTR_0016s04540	POPTR_0016s04540 (11)	scaffold_16:2671655-2671966(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213299.1.S1_at	A	A1TS	POPTR_0016s04790	POPTR_0016s04790 (11)	scaffold_16:2874086-2874645(+) (11)	NA	NA	NA	AT1G20970.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os08g40250.1	expressed protein	Medtr1g039770.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213300.1.S1_at	A	A1TS	POPTR_0016s04800	POPTR_0016s04800 (10)	scaffold_16:2877059-2878289(-) (11)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.1	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213302.1.S1_at	A	A1TS	POPTR_0016s04890	POPTR_0016s04890 (11)	scaffold_16:2949903-2950434(+) (11)	NA	Q700W2	Squamosa promoter-binding-like protein 9	AT2G42200.1	squamosa promoter binding protein-like 9 	LOC_Os09g31438.1	"OsSPL17 - SBP-box gene family member, expressed"	Medtr7g111590.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213303.1.S1_at	A	A1TS	POPTR_0016s04910	POPTR_0016s04910 (11)	scaffold_16:2958002-2959188(+) (11)	NA	Q9FG24	Protein STRUBBELIG-RECEPTOR FAMILY 2	AT5G06820.1	STRUBBELIG-receptor family 2 	LOC_Os03g08550.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr7g111570.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213304.1.S1_at	A	A1TS	POPTR_0016s04930	POPTR_0016s04930 (11)	scaffold_16:2966819-2968205(+) (11)	NA	A4IGM4	Hydroxysteroid 11-beta-dehydrogenase 1-like protein	AT5G50690.1	hydroxysteroid dehydrogenase 7 	LOC_Os04g32070.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.213305.1.S1_at	A	A1TS	POPTR_0016s04940	POPTR_0016s04940 (10)	scaffold_16:2974818-2975930(+) (10)	NA	A4IGM4	Hydroxysteroid 11-beta-dehydrogenase 1-like protein	AT5G50700.1	hydroxysteroid dehydrogenase 1 	LOC_Os12g27830.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.213306.1.S1_at	A	A1TS	POPTR_0016s04970	POPTR_0016s04970 (11)	scaffold_16:3023075-3025644(+) (11)	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT5G06839.3	bZIP transcription factor family protein 	LOC_Os09g31390.1	"transcription factor, putative, expressed"	Medtr7g111420.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.213307.1.S1_at	A	A1TS	POPTR_0016s04980	POPTR_0016s04980 (11)	scaffold_16:3030716-3031253(-) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT5G06850.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os06g41090.1	"anthranilate phosphoribosyltransferase, putative, expressed"	AC149807_12.1	C2 AC149807.14 75595-79594 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213308.1.S1_at	A	A1MS	POPTR_0016s05000	POPTR_0016s05000 (11)	scaffold_16:3044803-3045301(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT4G14480.1	Protein kinase superfamily protein 	LOC_Os03g47470.1	"STE_PAK_Ste20_STLK.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr2g121220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213309.1.S1_at	A	A1TS	POPTR_0016s05010	POPTR_0016s05010 (11)	scaffold_16:3050966-3051521(+) (11)	NA	Q05091	Polygalacturonase inhibitor	AT5G06860.1	polygalacturonase inhibiting protein 1 	LOC_Os05g01444.1	"polygalacturonase inhibitor precursor, putative, expressed"	Medtr7g111410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.213311.1.S1_at	A	A1TS	POPTR_0016s05050	POPTR_0016s05050 (11)	scaffold_16:3065027-3065418(-) (11)	NA	Q42798	Cytochrome P450 93A1	AT5G06900.1	"cytochrome P450, family 93, subfamily D, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr3g021620.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213312.1.S1_at	A	A1TS	POPTR_0016s05060	POPTR_0016s05060 (11)	scaffold_16:3066014-3066529(-) (11)	NA	Q42798	Cytochrome P450 93A1	AT5G06905.1	"cytochrome P450, family 712, subfamily A, polypeptide 2 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g111280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.213313.1.S1_at	A	A1TS	POPTR_0016s05080	POPTR_0016s05080 (11)	scaffold_16:3076235-3081242(-) (11)	NA	P25766	Ras-related protein RGP1	AT3G12160.1	RAB GTPase homolog A4D 	LOC_Os09g10940.1	"ras-related protein, putative, expressed"	Medtr3g101960.1	Ras GTPase; 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.213315.1.S1_at	A	A1TS	POPTR_0016s05140	POPTR_0016s05140 (11)	scaffold_16:3108827-3111076(+) (11)	NA	Q9C7D7	Protein cornichon homolog 1	AT3G12180.1	Cornichon family protein 	LOC_Os12g32180.1	"cornichon protein, putative, expressed"	Medtr7g111190.1	Cornichon 	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	GO:0016020|membrane
PtpAffx.213316.1.S1_at	A	A1MS	POPTR_0016s05160	POPTR_0016s05160 (9)	scaffold_16:3138009-3138145(+) (9)	NA	Q3EAI1	Transcription factor bHLH60	AT3G57800.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os06g41060.1	"helix-loop-helix DNA-binding, putative, expressed"	Medtr1g071420.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213317.1.S1_at	A	A1MS	POPTR_0006s05600	POPTR_0006s05600 (9)	scaffold_6:3943828-3944030(-) (9)	NA	Q3EAI1	Transcription factor bHLH60	AT3G57800.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g32510.4	"BHLH transcription factor, putative, expressed"	Medtr1g071420.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.213318.1.S1_at	A	A1TS	POPTR_0016s05180	POPTR_0016s05180 (11)	scaffold_16:3147649-3148129(+) (11)	NA	Q9LIC3	"Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial"	AT3G13770.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g41040.1	"pentatricopeptide, putative, expressed"	Medtr1g071450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213319.1.S1_at	A	A1TA	POPTR_0016s05240	POPTR_0016s05240 (11)	scaffold_16:3194443-3194948(-) (11)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os12g41180.1	"LSTK-1-like kinase, putative, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213320.1.S1_at	A	A1TS	POPTR_0016s05300	POPTR_0016s05300 (11)	scaffold_16:3232542-3233103(+) (11)	NA	Q42798	Cytochrome P450 93A1	AT2G42250.1	"cytochrome P450, family 712, subfamily A, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g111280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.213321.1.S1_s_at	A	A1TS	POPTR_0016s05310	POPTR_0016s05310 (11)	scaffold_16:3250489-3252060(-) (11)	NA	Q8VWG3	Protein TRANSPARENT TESTA 1	AT3G57670.1	C2H2-type zinc finger family protein 	LOC_Os06g40960.1	"ZOS6-05 - C2H2 zinc finger protein, expressed"	Medtr7g110960.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.213323.1.S1_at	A	A1TS	POPTR_0016s05350	POPTR_0016s05350 (10)	scaffold_16:3301184-3302386(+) (10)	NA	P38935	DNA-binding protein SMUBP-2	AT2G03270.1	"DNA-binding protein, putative "	LOC_Os03g38990.1	"DNA-binding protein, putative, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213324.1.S1_at	A	A1TS	POPTR_0016s05360	POPTR_0016s05360 (11)	scaffold_16:3303636-3304211(-) (11)	NA	Q9SVX5	Dehydration-responsive element-binding protein 2F	AT3G57600.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g07830.1	AP2 domain containing protein	Medtr7g110870.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.213325.1.S1_at	A	A1TS	POPTR_0016s05370	POPTR_0016s05370 (11)	scaffold_16:3309840-3310856(-) (11)	NA	NA	NA	AT1G68030.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os11g29240.1	expressed protein	Medtr2g005730.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213326.1.S1_at	A	A1TS	POPTR_0016s05400	POPTR_0016s05400 (11)	scaffold_16:3336270-3338130(+) (11)	NA	P28303	DNA-damage-inducible protein F	AT1G51340.2	MATE efflux family protein 	LOC_Os10g13940.1	"MATE efflux protein, putative, expressed"	Medtr2g117440.1	Ribosomal protein S2; Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.213327.1.S1_s_at	A	A1TS	POPTR_0016s05410	POPTR_0016s05410 (11)	scaffold_16:3343849-3343962(-) (11)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.1	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.21333.1.S1_at	A	A1TS	POPTR_0014s03830	POPTR_0014s03830 (11)	scaffold_14:3060884-3061423(+) (11)	NA	NA	NA	AT1G48460.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g50830.1	expressed protein	Medtr3g114280.1	"T1N15.7, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213330.1.S1_at	A	A1TS	POPTR_0016s05500	POPTR_0016s05500 (11)	scaffold_16:3437797-3438143(+) (11)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213331.1.S1_at	A	A1TS	POPTR_0016s05520	POPTR_0016s05520 (11)	scaffold_16:3457773-3458040(+) (11)	NA	Q941L0	Cellulose synthase A catalytic subunit 3 [UDP-forming]	AT5G05170.1	Cellulose synthase family protein 	LOC_Os07g10770.1	"CESA8 - cellulose synthase, expressed"	Medtr3g029130.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.213333.1.S1_x_at	A	A1TS	POPTR_0016s05570	POPTR_0016s05570 (11)	scaffold_16:3501850-3502717(-) (11)	NA	Q9LVP0	Probable leucine-rich repeat receptor-like protein kinase At5g63930	AT2G41820.1	Leucine-rich repeat protein kinase family protein 	LOC_Os07g10630.1	expressed protein	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213334.1.S1_at	A	A1TS	POPTR_0016s05580	POPTR_0016s05580 (11)	scaffold_16:3518744-3519172(-) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT1G61110.1	NAC domain containing protein 25 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr2g110730.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.213335.1.S1_at	A	A1TS	POPTR_0016s05590	POPTR_0016s05590 (11)	scaffold_16:3524983-3526414(+) (11)	NA	Q96B26	Exosome complex exonuclease RRP43	AT1G60080.1	3'-5'-exoribonuclease family protein 	LOC_Os11g20689.1	"exosome complex exonuclease, putative, expressed"	Medtr1g008100.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.213339.1.S1_at	A	A1TS	POPTR_0016s05690	POPTR_0016s05690 (11)	scaffold_16:3624514-3625354(-) (11)	NA	Q8RWI9	ABC transporter G family member 15	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os05g13520.1	"white-brown complex homolog protein 12, putative, expressed"	Medtr4g104580.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.213340.1.S1_at	A	A1TS	POPTR_0016s05710	POPTR_0016s05710 (11)	scaffold_16:3647635-3648406(-) (11)	NA	Q8RWI9	ABC transporter G family member 15	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os05g13520.1	"white-brown complex homolog protein 12, putative, expressed"	Medtr4g104440.1	ABC transporter related 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.213341.1.S1_at	A	A1TS	POPTR_0016s05720	POPTR_0016s05720 (11)	scaffold_16:3661337-3661531(-) (11)	NA	NA	NA	AT2G41660.1	"Protein of unknown function, DUF617 "	LOC_Os02g47980.1	"DUF617 domain containing protein, expressed"	Medtr8g115750.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213342.1.S1_at	A	A1TS	POPTR_0016s05810	POPTR_0016s05810 (11)	scaffold_16:3736137-3737444(-) (11)	NA	Q8RY99	"DNA repair protein recA homolog 2, mitochondrial"	AT3G10140.1	RECA homolog 3 	LOC_Os01g71690.2	"recA protein, expressed"	Medtr7g108080.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213343.1.S1_at	A	A1TS	POPTR_0016s05830	POPTR_0016s05830 (11)	scaffold_16:3748997-3749462(+) (11)	NA	NA	NA	AT2G27660.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g41930.1	"DC1 domain-containing protein, putative"	Medtr7g112030.1	C1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213344.1.S1_at	A	A1TS	POPTR_0016s05840	POPTR_0016s05840 (11)	scaffold_16:3762319-3762763(+) (11)	NA	NA	NA	AT2G42040.1	CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g53360.1	expressed protein	Medtr7g112050.1	WRC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213345.1.S1_at	A	A1TS	POPTR_0016s05940	POPTR_0016s05940 (11)	scaffold_16:3892972-3893249(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g112080.1	WRC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213348.1.S1_at	A	A1MS	POPTR_0016s06010	POPTR_0016s06010 (11)	scaffold_16:3928955-3929127(+) (11)	NA	Q55DB6	Activator of 90 kDa heat shock protein ATPase homolog	AT3G12050.1	Aha1 domain-containing protein 	LOC_Os08g36150.1	"activator of 90 kDa heat shock protein ATPase homolog, putative, expressed"	Medtr7g112200.1	"Activator of Hsp90 ATPase, N-terminal "	GO:0006950|response to stress	GO:0051087|chaperone binding||GO:0001671|ATPase activator activity	GO:0005737|cytoplasm
PtpAffx.213349.1.S1_at	A	A1TS	POPTR_0016s06020	POPTR_0016s06020 (11)	scaffold_16:3953345-3953469(+) (11)	NA	NA	NA	AT3G58050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41; Bacteria - 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses - 46; Other Eukaryotes - 4915 (source: NCBI BLink). 	LOC_Os10g01610.1	expressed protein	Medtr7g112300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213349.1.S1_s_at	A	A1TS	POPTR_0016s06020	POPTR_0016s06020 (11)	scaffold_16:3952916-3953310(+) (11)	NA	NA	NA	AT3G58050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41; Bacteria - 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses - 46; Other Eukaryotes - 4915 (source: NCBI BLink). 	LOC_Os10g01610.1	expressed protein	Medtr7g112300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213350.1.S1_s_at	A	A1TS	POPTR_0016s06050	POPTR_0016s06050 (10)	scaffold_16:3993330-3993615(-) (10)	NA	Q96DM3	Uncharacterized protein C18orf8	AT3G12010.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os10g26140.3	"CPuORF15 - conserved peptide uORF-containing transcript, expressed"	Medtr7g112420.1	Colon cancer-associated Mic1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213353.1.S1_at	A	A1TS	POPTR_0016s06150	POPTR_0016s06150 (11)	scaffold_16:4087737-4089933(-) (11)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr8g067950.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.213354.1.S1_at	A	A1TS	POPTR_0016s06160	POPTR_0016s06160 (11)	scaffold_16:4099897-4100400(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213356.1.S1_at	A	A1TS	POPTR_0016s06210	POPTR_0016s06210 (11)	scaffold_16:4162879-4163442(-) (11)	NA	Q08891	Fatty acyl-CoA reductase 2	AT3G11980.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os03g07140.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213357.1.S1_at	A	A1TS	POPTR_0016s06240	POPTR_0016s06240 (11)	scaffold_16:4183171-4183603(-) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT1G55310.2	SC35-like splicing factor 33 	LOC_Os03g25770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213357.1.S1_x_at	A	A1TS	POPTR_0016s06240	POPTR_0016s06240 (11)	scaffold_16:4183153-4183662(-) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT1G55310.2	SC35-like splicing factor 33 	LOC_Os03g25770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213358.1.S1_at	A	A1TS	POPTR_0016s06250	POPTR_0016s06250 (11)	scaffold_16:4201168-4202641(+) (11)	NA	O74835	rRNA biogenesis protein rrp5	AT3G11964.1	RNA binding;RNA binding 	LOC_Os07g10350.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g092300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.213359.1.S1_at	A	A1TS	POPTR_0016s06250	POPTR_0016s06250 (11)	scaffold_16:4204575-4205070(+) (11)	NA	O74835	rRNA biogenesis protein rrp5	AT3G11964.1	RNA binding;RNA binding 	LOC_Os07g10350.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g092300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.213360.1.S1_at	A	A1TS	POPTR_0016s06290	POPTR_0016s06290 (11)	scaffold_16:4228958-4229959(+) (11)	NA	NA	NA	AT3G58480.1	calmodulin-binding family protein 	LOC_Os10g27170.1	"calmodulin-binding protein, putative, expressed"	Medtr4g134270.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213361.1.S1_at	A	A1TS	POPTR_0016s06320	POPTR_0016s06320 (11)	scaffold_16:4245635-4246207(+) (11)	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35760.2	"pentatricopeptide, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213362.1.S1_at	A	A1TS	POPTR_0016s06330	POPTR_0016s06330 (11)	scaffold_16:4251664-4252141(+) (11)	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213363.1.S1_at	A	A1TS	POPTR_0016s06340	POPTR_0016s06340 (11)	scaffold_16:4254473-4254687(-) (11)	NA	O49160	Eukaryotic translation initiation factor 3 subunit C	AT3G56150.2	eukaryotic translation initiation factor 3C 	LOC_Os02g03080.1	"eukaryotic translation initiation factor 3 subunit C, putative, expressed"	Medtr7g143620.1	"Proteasome component region PCI; Eukaryotic translation initiation factor 3 subunit 8, C-terminal; Eukaryotic translation initiation factor 3 subunit 8, N-terminal; Winged helix repressor DNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	GO:0005852|eukaryotic translation initiation factor 3 complex
PtpAffx.213363.1.S1_s_at	A	A1TS	POPTR_0016s06340	POPTR_0016s06340 (11)	scaffold_16:4254591-4254994(-) (11)	NA	O49160	Eukaryotic translation initiation factor 3 subunit C	AT3G56150.2	eukaryotic translation initiation factor 3C 	LOC_Os02g03080.1	"eukaryotic translation initiation factor 3 subunit C, putative, expressed"	Medtr7g143620.1	"Proteasome component region PCI; Eukaryotic translation initiation factor 3 subunit 8, C-terminal; Eukaryotic translation initiation factor 3 subunit 8, N-terminal; Winged helix repressor DNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	GO:0005852|eukaryotic translation initiation factor 3 complex
PtpAffx.213364.1.S1_at	A	A1TS	POPTR_0016s06370	POPTR_0016s06370 (11)	scaffold_16:4270606-4271580(-) (11)	NA	Q54VZ8	Exocyst complex component 8	AT1G10385.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os07g10110.1	expressed protein	Medtr4g023160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213365.1.S1_at	A	A1TS	POPTR_0016s06380	POPTR_0016s06380 (11)	scaffold_16:4278977-4279660(+) (11)	NA	NA	NA	AT3G43590.1	zinc knuckle (CCHC-type) family protein 	LOC_Os11g36480.2	"zinc knuckle domain containing protein, expressed"	Medtr5g093940.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.213366.1.S1_at	A	A1TS	POPTR_0016s06390	POPTR_0016s06390 (11)	scaffold_16:4291355-4291841(+) (11)	NA	O80437	Glycerol-3-phosphate acyltransferase 6	AT2G38110.1	glycerol-3-phosphate acyltransferase 6 	LOC_Os03g52570.1	"glycerol-3-phosphate acyltransferase, putative"	Medtr1g059560.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.213367.1.S1_at	A	A1TS	POPTR_0016s06440	POPTR_0016s06440 (11)	scaffold_16:4331926-4333071(-) (11)	NA	Q4V8B1	Proton-coupled amino acid transporter 3	AT3G11900.1	aromatic and neutral transporter 1 	LOC_Os07g12770.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g125640.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213369.1.S1_at	A	A1TS	POPTR_0016s06480	POPTR_0016s06480 (11)	scaffold_16:4353161-4353433(+) (11)	NA	Q94AX4	"D-lactate dehydrogenase [cytochrome], mitochondrial"	AT5G06580.1	FAD-linked oxidases family protein 	LOC_Os07g06890.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.213369.1.S1_s_at	A	A1TS	POPTR_0016s06480	POPTR_0016s06480 (11)	scaffold_16:4352531-4354590(+) (11)	NA	Q94AX4	"D-lactate dehydrogenase [cytochrome], mitochondrial"	AT5G06580.1	FAD-linked oxidases family protein 	LOC_Os07g06890.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.213370.1.S1_at	A	A1MS	POPTR_0016s06480	POPTR_0016s06480 (11)	scaffold_16:4352242-4352296(+) (11)	NA	Q94AX4	"D-lactate dehydrogenase [cytochrome], mitochondrial"	AT5G06580.1	FAD-linked oxidases family protein 	LOC_Os07g06890.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.213370.1.S1_s_at	A	A1TS	POPTR_0016s06480	POPTR_0016s06480 (11)	scaffold_16:4349702-4352188(+) (11)	NA	Q94AX4	"D-lactate dehydrogenase [cytochrome], mitochondrial"	AT5G06580.1	FAD-linked oxidases family protein 	LOC_Os07g06890.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.213372.1.S1_at	A	A1TS	POPTR_0016s06520	POPTR_0016s06520 (9)	scaffold_16:4375686-4376078(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213374.1.S1_at	A	A1TS	POPTR_0016s06560	POPTR_0016s06560 (11)	scaffold_16:4402051-4402640(+) (11)	NA	Q9FG16	Pentatricopeptide repeat-containing protein At5g06540	AT5G06540.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g08120.1	"pentatricopeptide, putative, expressed"	Medtr3g069190.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213375.1.S1_at	A	A1TS	POPTR_0016s06590	POPTR_0016s06590 (11)	scaffold_16:4417556-4419575(+) (11)	NA	Q9ZV15	Calcium-dependent protein kinase 20	AT2G38910.1	calcium-dependent protein kinase 20 	LOC_Os03g57450.1	"CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213376.1.S1_at	A	A1TS	POPTR_0016s06630	POPTR_0016s06630 (11)	scaffold_16:4434968-4436417(-) (11)	NA	Q8S4R4	"Carotenoid isomerase, chloroplastic"	AT1G06820.1	carotenoid isomerase 	LOC_Os11g36440.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213377.1.S1_at	A	A1TS	POPTR_0016s06640	POPTR_0016s06640 (11)	scaffold_16:4448386-4449495(+) (11)	NA	Q5IH14	Sucrose-phosphatase 1	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os02g05030.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.213377.1.S1_s_at	A	A1TS	POPTR_0016s06640	POPTR_0016s06640 (11)	scaffold_16:4448292-4451427(+) (11)	NA	Q5IH14	Sucrose-phosphatase 1	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os02g05030.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.213378.1.S1_at	A	A1TS	POPTR_0016s06660	POPTR_0016s06660 (11)	scaffold_16:4467059-4467394(+) (11)	NA	NA	NA	AT3G11690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g42650.1	"pollen preferential protein, putative, expressed"	Medtr2g104580.1	"pollen preferential protein^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213379.1.S1_at	A	A1TS	POPTR_0016s06700	POPTR_0016s06700 (11)	scaffold_16:4523428-4524766(-) (11)	NA	Q38870	Calcium-dependent protein kinase 2	AT3G10660.1	calmodulin-domain protein kinase cdpk isoform 2 	LOC_Os03g57450.1	"CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213380.1.S1_at	A	A1TS	POPTR_0016s06720	POPTR_0016s06720 (11)	scaffold_16:4537824-4538148(+) (11)	NA	NA	NA	AT4G29035.1	Plant self-incompatibility protein S1 family 	NA	NA	Medtr4g144120.1	Plant self-incompatibility S1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213381.1.S1_at	A	A1TS	POPTR_0016s06730	POPTR_0016s06730 (9)	scaffold_16:4541481-4542035(-) (9)	NA	NA	NA	AT5G06440.3	BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). 	LOC_Os11g36070.3	expressed protein	AC233682_33.1	"Myosin head, motor region; WGR; Glycosyl hydrolases 38, C-terminal AC233682.2 126964-129412 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213382.1.S1_at	A	A1TS	POPTR_0016s06770	POPTR_0016s06770 (11)	scaffold_16:4579435-4579963(-) (11)	NA	Q93Y01	Ubiquitin carboxyl-terminal hydrolase 9	AT4G10590.1	ubiquitin-specific protease 10 	LOC_Os07g06610.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr2g104700.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.213383.1.S1_at	A	A1TS	POPTR_0016s06780	POPTR_0016s06780 (11)	scaffold_16:4584493-4584833(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213384.1.S1_at	A	A1TS	POPTR_0016s06790	POPTR_0016s06790 (11)	scaffold_16:4596192-4596754(+) (11)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213385.1.S1_at	A	A1TS	POPTR_0016s06820	POPTR_0016s06820 (11)	scaffold_16:4611933-4612137(-) (11)	NA	Q8RX29	RING-H2 finger protein ATL70	AT2G35910.1	RING/U-box superfamily protein 	LOC_Os07g06560.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g149630.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213386.1.S1_at	A	A1TS	POPTR_0016s06850	POPTR_0016s06850 (10)	scaffold_16:4631303-4631848(-) (10)	NA	Q9FJK3	Agamous-like MADS-box protein AGL80	AT5G48670.1	AGAMOUS-like 80 	LOC_Os01g18440.1	OsMADS89 - MADS-box family gene with M-gamma type-box	Medtr3g087250.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.213387.1.S1_at	A	A1TS	POPTR_0016s06860	POPTR_0016s06860 (10)	scaffold_16:4655917-4656870(+) (11)	NA	Q9M9X4	Nuclear transcription factor Y subunit A-2	AT3G05690.1	"nuclear factor Y, subunit A2 "	LOC_Os12g42400.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr1g149800.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.213388.1.S1_at	A	A1TS	POPTR_0016s06860	POPTR_0016s06860 (11)	scaffold_16:4658847-4659752(+) (11)	NA	Q9M9X4	Nuclear transcription factor Y subunit A-2	AT3G05690.1	"nuclear factor Y, subunit A2 "	LOC_Os12g42400.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr1g149800.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.213389.1.S1_s_at	A	A1TS	POPTR_0016s06870	POPTR_0016s06870 (11)	scaffold_16:4662051-4662628(+) (11)	NA	P19684	"33 kDa ribonucleoprotein, chloroplastic"	AT3G52380.1	chloroplast RNA-binding protein 33 	LOC_Os07g06450.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g149790.1	RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding EF-hand 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213390.1.S1_at	A	A1TS	POPTR_0016s06890	POPTR_0016s06890 (11)	scaffold_16:4665186-4665923(-) (11)	NA	Q640V9	Putative deoxyribonuclease TATDN1	AT3G52390.1	TatD related DNase 	LOC_Os07g06440.1	"deoxyribonuclease tatD, putative, expressed"	NA	NA	NA	"GO:0016888|""endodeoxyribonuclease activity, producing 5'-phosphomonoesters"""	NA
PtpAffx.213391.1.S1_at	A	A1TS	POPTR_0016s06900	POPTR_0016s06900 (11)	scaffold_16:4679715-4680205(-) (11)	NA	Q8GX46	Transcription factor bHLH91	AT2G31210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g51070.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	AC235671_17.1	Helix-loop-helix DNA-binding AC235671.2 74985-73151 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.213392.1.S1_at	A	A1TS	POPTR_0016s06910	POPTR_0016s06910 (11)	scaffold_16:4692801-4693791(-) (11)	NA	Q9ZSD4	Syntaxin-121	AT3G11820.1	syntaxin of plants 121 	LOC_Os06g39050.1	"syntaxin, putative, expressed"	Medtr1g149850.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.213393.1.S1_at	A	A1TS	POPTR_0016s06930	POPTR_0016s06930 (10)	scaffold_16:4709967-4710857(-) (10)	NA	Q9Y2L5	Trafficking protein particle complex subunit 8	AT5G16280.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g57300.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213394.1.S1_at	A	A1TS	POPTR_0016s06930	POPTR_0016s06930 (11)	scaffold_16:4715176-4715868(-) (11)	NA	Q9Y2L5	Trafficking protein particle complex subunit 8	AT5G16280.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g57300.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213395.1.S1_at	A	A1TS	POPTR_0016s06970	POPTR_0016s06970 (10)	scaffold_16:4762811-4763533(+) (11)	NA	NA	NA	AT3G05680.1	embryo defective 2016 	LOC_Os03g35340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213396.1.S1_at	A	A1TS	POPTR_0016s06970	POPTR_0016s06970 (11)	scaffold_16:4771082-4772000(+) (11)	NA	NA	NA	AT3G05680.1	embryo defective 2016 	LOC_Os03g35340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213397.1.S1_at	A	A1TS	POPTR_0016s07000	POPTR_0016s07000 (11)	scaffold_16:4787106-4787795(+) (11)	NA	Q9SVC5	Dof zinc finger protein DOF3.5	AT3G52440.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os05g36900.1	"dof zinc finger domain containing protein, putative"	Medtr3g125030.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.213398.1.S1_at	A	A1TS	POPTR_0016s07010	POPTR_0016s07010 (11)	scaffold_16:4802577-4802851(-) (11)	NA	Q9SVC6	E3 ubiquitin-protein ligase PUB22	AT3G52450.1	plant U-box 22 	LOC_Os04g58920.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.213399.1.S1_at	A	A1TS	POPTR_0016s07020	POPTR_0016s07020 (11)	scaffold_16:4809079-4809647(-) (11)	NA	Q9SF15	E3 ubiquitin-protein ligase PUB24	AT3G11840.1	plant U-box 24 	LOC_Os04g58920.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.2134.1.A1_at	A	A1TS	POPTR_0009s03290	POPTR_0009s03290 (11)	scaffold_9:3966588-3967484(+) (11)	NA	NA	NA	AT5G59830.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr4g078970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2134.2.A1_s_at	A	A2TS	POPTR_0001s24280	POPTR_0009s03290 (11)//POPTR_0001s24280 (11)	scaffold_1:23616254-23617072(+) (11)//scaffold_9:3966392-3967209(+) (11)	NA	NA	NA	AT5G59830.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr4g078970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213400.1.S1_at	A	A2TS	POPTR_0010s01250	POPTR_0010s01250 (11)//POPTR_0016s07050 (11)	scaffold_10:1145426-1145773(-) (11)//scaffold_11:6426487-6426834(+) (9)//scaffold_16:4865434-4865781(-) (11)	POPTR_0011s06250 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213401.1.S1_at	A	A1TS	POPTR_0016s07060	POPTR_0016s07060 (11)	scaffold_16:4886641-4887262(+) (11)	NA	NA	NA	AT5G53620.3	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). 	LOC_Os08g43060.3	expressed protein	Medtr3g123170.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213401.1.S1_x_at	A	A1TS	POPTR_0016s07060	POPTR_0016s07060 (11)	scaffold_16:4886641-4887262(+) (11)	NA	NA	NA	AT5G53620.3	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). 	LOC_Os08g43060.3	expressed protein	Medtr3g123170.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213402.1.S1_at	A	A1TS	POPTR_0016s07070	POPTR_0016s07070 (11)	scaffold_16:4899301-4900139(+) (11)	NA	Q9SRM9	Aluminum-activated malate transporter 8	AT3G11680.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105110.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213403.1.S1_at	A	A1TS	POPTR_0016s07100	POPTR_0016s07100 (11)	scaffold_16:4949050-4949894(+) (11)	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.2	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213403.1.S1_s_at	A	A1TS	POPTR_0016s07100	POPTR_0016s07100 (11)	scaffold_16:4949882-4950064(+) (11)	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.2	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213404.1.S1_at	A	A1TS	POPTR_0016s07120	POPTR_0016s07120 (11)	scaffold_16:4968421-4968858(+) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT2G01820.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g58910.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr2g105170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213405.1.S1_at	A	A1TS	POPTR_0016s07170	POPTR_0016s07170 (11)	scaffold_16:5002979-5003690(+) (11)	NA	O54922	Exocyst complex component 7	AT5G52340.1	exocyst subunit exo70 family protein A2 	LOC_Os11g05880.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr1g112310.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.213406.1.S1_at	A	A1TS	POPTR_0016s07180	POPTR_0016s07180 (11)	scaffold_16:5007082-5007637(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213407.1.S1_at	A	A1TS	POPTR_0016s07190	POPTR_0016s07190 (11)	scaffold_16:5008635-5009150(+) (11)	NA	NA	NA	AT3G52460.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213408.1.S1_at	A	A1TS	POPTR_0016s07200	POPTR_0016s07200 (10)	scaffold_16:5012006-5012714(+) (10)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g26200.1	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213409.1.S1_at	A	A1TS	POPTR_0016s07220	POPTR_0016s07220 (11)	scaffold_16:5025991-5026432(+) (11)	NA	NA	NA	AT3G11660.1	NDR1/HIN1-like 1 	LOC_Os11g05860.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g107350.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.213409.1.S1_s_at	A	A1TS	POPTR_0016s07220	POPTR_0016s07220 (11)	scaffold_16:5026108-5026501(+) (11)	NA	NA	NA	AT3G11660.1	NDR1/HIN1-like 1 	LOC_Os11g05860.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g107350.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.213410.1.S1_at	A	A1TS	POPTR_0016s07240	POPTR_0016s07240 (11)	scaffold_16:5043557-5043670(-) (11)	NA	NA	NA	AT3G52480.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213411.1.S1_at	A	A1TS	POPTR_0016s07250	POPTR_0016s07250 (11)	scaffold_16:5090752-5091144(-) (11)	NA	P42730	Heat shock protein 101	AT3G52490.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g33980.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr1g112350.1	"Immunoglobulin/major histocompatibility complex; Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213413.1.S1_at	A	A1TS	POPTR_0016s07290	POPTR_0016s07290 (11)	scaffold_16:5179373-5179464(+) (11)	NA	NA	NA	AT2G36000.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g24590.1	"mTERF domain containing protein, expressed"	AC233682_44.1	Mitochodrial transcription termination factor-related AC233682.2 160878-163584 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213413.1.S1_s_at	A	A1TS	POPTR_0016s07290	POPTR_0016s07290 (11)	scaffold_16:5178873-5179101(+) (11)	NA	NA	NA	AT2G36000.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g24590.1	"mTERF domain containing protein, expressed"	AC233682_44.1	Mitochodrial transcription termination factor-related AC233682.2 160878-163584 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213414.1.S1_at	A	A1TS	POPTR_0016s07310	POPTR_0016s07310 (11)	scaffold_16:5190209-5191685(+) (11)	NA	Q16254	Transcription factor E2F4	AT2G36010.3	E2F transcription factor 3 	LOC_Os12g06200.2	"E2F family transcription factor protein, putative, expressed"	AC146557_13.1	Winged helix repressor DNA-binding AC146557.33 75654-81329 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
PtpAffx.213416.1.S1_at	A	A1TS	POPTR_0016s07320	POPTR_0016s07320 (10)	scaffold_16:5199328-5200159(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213417.1.S1_at	A	A1TS	POPTR_0016s07330	POPTR_0016s07330 (11)	scaffold_16:5201680-5201975(+) (11)	NA	NA	NA	AT5G06280.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	AC146630_3.1	hypothetical protein AC146630.25 11101-11562 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213418.1.S1_at	A	A1TS	POPTR_0016s07340	POPTR_0016s07340 (11)	scaffold_16:5203497-5204625(-) (11)	NA	Q8GXE9	HVA22-like protein j	AT2G36020.1	HVA22-like protein J 	LOC_Os02g02920.1	"HVA22, putative, expressed"	Medtr3g156300.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213420.1.S1_a_at	A	A1TS	POPTR_0016s07360	POPTR_0016s07360 (11)	scaffold_16:5225701-5225824(+) (11)//scaffold_16:5225939-5226062(+) (11)	NA	NA	NA	AT3G52525.1	ovate family protein 6 	LOC_Os01g64430.1	"DUF623 domain containing protein, expressed"	AC146630_7.1	Uncharacterized plant-specific domain AC146630.25 27427-28667 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213420.1.S1_at	A	A1TS	POPTR_0016s07360	POPTR_0016s07360 (11)	scaffold_16:5225439-5225878(+) (11)	NA	NA	NA	AT3G52525.1	ovate family protein 6 	LOC_Os01g64430.1	"DUF623 domain containing protein, expressed"	AC146630_7.1	Uncharacterized plant-specific domain AC146630.25 27427-28667 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213422.1.S1_at	A	A1TS	POPTR_0016s07380	POPTR_0016s07380 (11)	scaffold_16:5247594-5247983(-) (11)	NA	NA	NA	AT5G04820.1	ovate family protein 13 	LOC_Os01g64410.1	"ATOFP18/OFP18, putative, expressed"	AC146630_8.1	Uncharacterized plant-specific domain AC146630.25 44746-43647 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213423.1.S1_at	A	A1TS	POPTR_0016s07390	POPTR_0016s07390 (11)	scaffold_16:5254238-5254761(-) (11)	NA	Q9FMS6	Probable CCR4-associated factor 1 homolog 11	AT5G22250.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	AC146630_12.1	"Polynucleotidyl transferase, Ribonuclease H fold AC146630.25 68628-67340 F EGN_Mt090430 200"	NA	NA	GO:0005634|nucleus
PtpAffx.213423.1.S1_s_at	A	A1TS	POPTR_0016s07390	POPTR_0016s07390 (11)	scaffold_16:5254183-5254565(-) (11)	POPTR_0006s22200 (6)	Q9FMS6	Probable CCR4-associated factor 1 homolog 11	AT5G22250.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	AC146630_12.1	"Polynucleotidyl transferase, Ribonuclease H fold AC146630.25 68628-67340 F EGN_Mt090430 200"	NA	NA	GO:0005634|nucleus
PtpAffx.213424.1.S1_at	A	A1TS	POPTR_0016s07410	POPTR_0016s07410 (11)	scaffold_16:5266774-5267015(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213425.1.S1_at	A	A1TS	POPTR_0016s07420	POPTR_0016s07420 (11)	scaffold_16:5268508-5269333(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g33320.3	"RNA recognition motif containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213427.1.S1_at	A	A1TS	POPTR_0016s07460	POPTR_0016s07460 (11)	scaffold_16:5345293-5345627(+) (11)	NA	Q9LZ17	40S ribosomal protein S17-4	AT5G04800.4	Ribosomal S17 family protein 	LOC_Os03g01900.1	"40S ribosomal protein S17, putative, expressed"	AC146550_9.1	Ribosomal protein S17e AC146550.40 33438-32707 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.213428.1.S1_at	A	A1TS	POPTR_0016s07470	POPTR_0016s07470 (11)	scaffold_16:5353787-5354314(-) (11)	NA	Q7FAE1	Momilactone A synthase	AT1G52340.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g59610.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.213429.1.S1_at	A	A1TS	POPTR_0016s07490	POPTR_0016s07490 (11)	scaffold_16:5364639-5365225(-) (11)	NA	Q7FAE1	Momilactone A synthase	AT4G03140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10000.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.213430.1.S1_at	A	A1TS	POPTR_0016s07530	POPTR_0016s07530 (10)	scaffold_16:5401457-5402716(+) (11)	NA	NA	NA	AT5G65760.1	Serine carboxypeptidase S28 family protein 	LOC_Os01g56150.1	"OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213431.1.S1_x_at	A	A1TS	POPTR_0016s07540	POPTR_0016s07540 (10)	scaffold_16:5434550-5434876(+) (11)	NA	Q9FNI3	B3 domain-containing protein At5g06250	AT5G06250.2	AP2/B3-like transcriptional factor family protein 	LOC_Os11g05740.1	"B3 DNA binding domain containing protein, expressed"	AC233685_81.1	Transcriptional factor B3 AC233685.2 344120-341990 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.213432.1.S1_at	A	A1TS	POPTR_0016s07580	POPTR_0016s07580 (11)	scaffold_16:5448272-5448986(-) (11)	NA	NA	NA	AT3G11560.4	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213432.1.S1_x_at	A	A1TS	POPTR_0016s07580	POPTR_0016s07580 (11)	scaffold_16:5447563-5448977(-) (11)	NA	NA	NA	AT3G11560.4	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213433.1.S1_at	A	A1TS	POPTR_0016s07590	POPTR_0016s07590 (11)	scaffold_16:5459770-5460015(+) (11)	NA	Q8S9M4	Pentatricopeptide repeat-containing protein At2g41080	AT2G41080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g60200.1	"pentatricopeptide, putative, expressed"	Medtr4g129600.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213434.1.S1_at	A	A1MS	POPTR_0016s07590	POPTR_0016s07590 (9)	scaffold_16:5460955-5461774(+) (9)	NA	Q8S9M4	Pentatricopeptide repeat-containing protein At2g41080	AT2G41080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g60200.1	"pentatricopeptide, putative, expressed"	Medtr4g129600.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213436.1.S1_at	A	A1TS	POPTR_0016s07610	POPTR_0016s07610 (11)	scaffold_16:5469045-5469768(-) (11)	NA	B9IIR4	UPF0497 membrane protein 4	AT3G11550.1	Uncharacterised protein family (UPF0497) 	LOC_Os06g12500.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213437.1.S1_at	A	A1TS	POPTR_0016s07620	POPTR_0016s07620 (11)	scaffold_16:5473953-5474751(-) (11)	NA	B9IIR5	UPF0497 membrane protein 9	AT2G36100.1	Uncharacterised protein family (UPF0497) 	LOC_Os06g12500.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.213438.1.S1_at	A	A1TS	POPTR_0016s07650	POPTR_0016s07650 (11)	scaffold_16:5484090-5486272(-) (11)	NA	O82039	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	AT3G11540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44510.1	"UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213439.1.S1_at	A	A1TS	POPTR_0016s07660	POPTR_0016s07660 (11)	scaffold_16:5505769-5506354(+) (11)	NA	Q9LPV9	WD repeat-containing protein LWD1	AT1G12910.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g32430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g099620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213440.1.S1_at	A	A1TS	POPTR_0016s07680	POPTR_0016s07680 (11)	scaffold_16:5518504-5519736(-) (11)	NA	Q9FMR3	NAC domain-containing protein 90	AT5G22380.1	NAC domain containing protein 90 	LOC_Os11g05614.1	"no apical meristem protein, putative, expressed"	Medtr2g107600.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.213441.1.S1_s_at	A	A1TS	POPTR_0016s07710	POPTR_0016s07710 (11)	scaffold_16:5561046-5561602(-) (11)	NA	NA	NA	AT3G15040.1	"Protein of unknown function, DUF584 "	LOC_Os01g64300.1	"DUF584 domain containing protein, putative, expressed"	Medtr2g107620.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213442.1.S1_s_at	A	A1TS	POPTR_0016s07750	POPTR_0016s07750 (11)	scaffold_16:5591020-5591202(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213443.1.S1_at	A	A1TS	POPTR_0016s07830	POPTR_0016s07830 (11)	scaffold_16:5646560-5646890(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213444.1.S1_at	A	A1TS	POPTR_0016s07840	POPTR_0016s07840 (11)	scaffold_16:5662668-5663213(-) (11)	NA	Q9SUH6	Pentatricopeptide repeat-containing protein At4g30700	AT4G30700.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g14130.3	"pentatricopeptide, putative, expressed"	Medtr2g122730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213445.1.S1_at	A	A1TS	POPTR_0016s07860	POPTR_0016s07860 (11)	scaffold_16:5700985-5701043(+) (11)	NA	NA	NA	AT3G52610.1	unknown protein; Has 68 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g64256.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr7g127740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213445.1.S1_s_at	A	A1TS	POPTR_0016s07860	POPTR_0016s07860 (11)	scaffold_16:5697138-5700814(+) (11)	NA	NA	NA	AT3G52610.1	unknown protein; Has 68 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g64256.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr7g127740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213446.1.S1_at	A	A1TS	POPTR_0016s07920	POPTR_0016s07920 (11)	scaffold_16:5746880-5748849(+) (11)	NA	P39144	4'-phosphopantetheinyl transferase	AT3G11470.1	4'-phosphopantetheinyl transferase superfamily 	LOC_Os08g14490.1	"dehydrogenase-phosphopantetheinyltransferase, putative, expressed"	Medtr4g144650.1	4-phosphopantetheinyl transferase 	GO:0009059|macromolecule biosynthetic process	GO:0008897|holo-[acyl-carrier-protein] synthase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.213446.1.S1_s_at	A	A1TS	POPTR_0016s07920	POPTR_0016s07920 (11)	scaffold_16:5746955-5749030(+) (11)	NA	P39144	4'-phosphopantetheinyl transferase	AT3G11470.1	4'-phosphopantetheinyl transferase superfamily 	LOC_Os08g14490.1	"dehydrogenase-phosphopantetheinyltransferase, putative, expressed"	Medtr4g144650.1	4-phosphopantetheinyl transferase 	GO:0009059|macromolecule biosynthetic process	GO:0008897|holo-[acyl-carrier-protein] synthase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.213447.1.S1_at	A	A1TS	POPTR_0016s07930	POPTR_0016s07930 (11)	scaffold_16:5756934-5757265(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213448.1.S1_at	A	A1TS	POPTR_0016s07960	POPTR_0016s07960 (11)	scaffold_16:5768208-5768416(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213449.1.S1_at	A	A1TS	POPTR_0016s08010	POPTR_0016s08010 (11)	scaffold_16:5812016-5812565(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT3G52660.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g127590.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213450.1.S1_at	A	A1TS	POPTR_0016s08030	POPTR_0016s08030 (11)	scaffold_16:5835032-5835363(-) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G03870.1	Glutaredoxin family protein 	LOC_Os04g33680.1	"glutaredoxin, putative, expressed"	Medtr7g127470.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.213451.1.S1_at	A	A1TS	POPTR_0016s08040	POPTR_0016s08040 (11)	scaffold_16:5856828-5857318(+) (11)	NA	NA	NA	AT3G52710.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g127500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213452.1.S1_at	A	A1TS	POPTR_0016s08050	POPTR_0016s08050 (11)	scaffold_16:5859315-5860351(-) (11)	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT3G52720.1	alpha carbonic anhydrase 1 	LOC_Os02g33030.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213455.1.S1_at	A	A1TS	POPTR_0016s08090	POPTR_0016s08090 (11)	scaffold_16:5930177-5930486(+) (11)	NA	NA	NA	AT2G37400.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213456.1.S1_at	A	A1TS	POPTR_0016s08100	POPTR_0016s08100 (11)	scaffold_16:5945352-5945714(+) (11)	NA	NA	NA	AT3G53540.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). 	LOC_Os03g17210.2	expressed protein	Medtr7g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213457.1.S1_at	A	A1TS	POPTR_0016s08110	POPTR_0016s08110 (11)	scaffold_16:5962476-5962983(+) (11)	NA	NA	NA	AT1G49330.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os05g47620.1	conserved hypothetical protein	Medtr7g117230.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213459.1.S1_at	A	A1TS	POPTR_0016s08160	POPTR_0016s08160 (11)	scaffold_16:6021894-6022489(-) (11)	NA	NA	NA	AT2G39370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os01g61980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213460.1.S1_at	A	A1TS	POPTR_0016s08170	POPTR_0016s08170 (11)	scaffold_16:6025162-6026150(-) (11)	NA	NA	NA	AT2G37370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g06980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213461.1.S1_at	A	A1TS	POPTR_0016s08190	POPTR_0016s08190 (11)	scaffold_16:6041492-6042078(-) (11)	NA	Q92539	Phosphatidate phosphatase LPIN2	AT3G09560.3	Lipin family protein 	LOC_Os05g38710.1	"lipin, N-terminal conserved region family protein, expressed"	Medtr7g120540.1	"Lipin, N-terminal conserved region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213462.1.S1_at	A	A1TS	POPTR_0016s08200	POPTR_0016s08200 (11)	scaffold_16:6048406-6048682(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213464.1.S1_at	A	A1TS	POPTR_0016s08260	POPTR_0016s08260 (11)	scaffold_16:6090680-6091314(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213465.1.S1_at	A	A1TS	POPTR_0016s08280	POPTR_0016s08280 (11)	scaffold_16:6097871-6098299(+) (11)	NA	Q05968	Pathogenesis-related protein 1	AT3G09590.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os05g51680.2	"SCP-like extracellular protein, expressed"	Medtr8g128380.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213466.1.S1_at	A	A1TS	POPTR_0016s08290	POPTR_0016s08290 (10)	scaffold_16:6099770-6099803(-) (10)	NA	Q9ZUT3	Protein ALUMINUM SENSITIVE 3	AT2G37330.1	aluminum sensitive 3 	LOC_Os05g02750.1	"ABC transporter, membrane-spanning/permease subunit, putative, expressed"	AC235022_6.1	Conserved hypothetical protein 245 AC235022.1 27547-25968 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213466.1.S1_x_at	A	A1TS	POPTR_0016s08290	POPTR_0016s08290 (11)	scaffold_16:6099550-6100330(-) (11)	NA	Q9ZUT3	Protein ALUMINUM SENSITIVE 3	AT2G37330.1	aluminum sensitive 3 	LOC_Os05g02750.1	"ABC transporter, membrane-spanning/permease subunit, putative, expressed"	AC235022_6.1	Conserved hypothetical protein 245 AC235022.1 27547-25968 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213467.1.S1_at	A	A1TS	POPTR_0016s08300	POPTR_0016s08300 (11)	scaffold_16:6121270-6121802(-) (11)	NA	Q9ZUT4	Pentatricopeptide repeat-containing protein At2g37320	AT2G37320.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g13990.1	"pentatricopeptide, putative, expressed"	Medtr7g093710.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213468.1.S1_at	A	A1TS	POPTR_0016s08320	POPTR_0016s08320 (11)	scaffold_16:6139889-6141027(+) (11)	NA	O23826	125 kDa kinesin-related protein	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.213469.1.S1_at	A	A1TS	POPTR_0016s08350	POPTR_0016s08350 (9)	scaffold_16:6149559-6149944(+) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G02750.1	RING/U-box superfamily protein 	LOC_Os05g33830.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g080710.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213470.1.S1_at	A	A1TS	POPTR_0016s08360	POPTR_0016s08360 (11)	scaffold_16:6166311-6166884(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g17500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213471.1.S1_at	A	A1MS	POPTR_0016s08390	POPTR_0016s08390 (10)	scaffold_16:6191651-6192183(+) (10)	NA	NA	NA	AT5G60335.1	Thioesterase superfamily protein 	NA	NA	Medtr5g095000.1	MaoC-like dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213473.1.S1_at	A	A1TS	POPTR_0016s08450	POPTR_0016s08450 (11)	scaffold_16:6262296-6262775(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213476.1.S1_at	A	A1TS	POPTR_0016s08530	POPTR_0016s08530 (11)	scaffold_16:6341093-6341926(+) (11)	NA	P47927	Floral homeotic protein APETALA 2	AT2G28550.3	related to AP2.7 	LOC_Os07g13170.2	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.213477.1.S1_at	A	A1TS	POPTR_0016s08540	POPTR_0016s08540 (10)	scaffold_16:6345975-6346507(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213478.1.S1_at	A	A1TS	POPTR_0016s08560	POPTR_0016s08560 (11)	scaffold_16:6366659-6366940(-) (11)	NA	O95628	CCR4-NOT transcription complex subunit 4	AT3G45630.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g01190.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g080070.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213478.1.S1_s_at	A	A2TS	POPTR_0006s13450	POPTR_0006s13450 (11)//POPTR_0016s08560 (11)	scaffold_16:6365817-6366600(-) (11)//scaffold_6:10665323-10666110(+) (11)	NA	Q8BT14	CCR4-NOT transcription complex subunit 4	AT5G60170.2	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g01190.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g080070.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213479.1.S1_s_at	A	A1TS	POPTR_0016s08590	POPTR_0016s08590 (11)	scaffold_16:6414163-6414339(+) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT2G37050.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	Medtr7g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213480.1.S1_at	A	A1TS	POPTR_0016s08620	POPTR_0016s08620 (11)	scaffold_16:6426043-6426836(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213481.1.S1_at	A	A1TS	POPTR_0016s08640	POPTR_0016s08640 (11)	scaffold_16:6455287-6456571(+) (11)	NA	Q9LYZ7	E3 ubiquitin-protein ligase UPL4	AT5G02880.1	ubiquitin-protein ligase 4 	LOC_Os05g03100.1	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.213482.1.S1_at	A	A1TS	POPTR_0016s08650	POPTR_0016s08650 (11)	scaffold_16:6460750-6461187(+) (11)	NA	Q9SF38	"Pentatricopeptide repeat-containing protein At3g09650, chloroplastic"	AT3G09650.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g01210.1	"HCF152, putative, expressed"	Medtr2g056710.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213483.1.S1_at	A	A1MS	POPTR_0016s08660	POPTR_0016s08660 (10)	scaffold_16:6466717-6467480(-) (10)	NA	Q9UJA3	DNA replication licensing factor MCM8	AT3G09660.1	minichromosome maintenance 8 	LOC_Os05g38850.1	MCM8 - Putative minichromosome maintenance MCM family subunit 8	Medtr7g120880.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213484.1.S1_s_at	A	A1MS	POPTR_0016s08670	POPTR_0016s08670 (11)	scaffold_16:6470963-6471483(+) (11)	NA	NA	NA	AT3G09670.2	Tudor/PWWP/MBT superfamily protein 	LOC_Os11g19810.2	"PWWP domain containing protein, expressed"	Medtr1g086970.1	PWWP; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213485.1.S1_at	A	A1MS	POPTR_0016s08680	POPTR_0016s08680 (10)	scaffold_16:6482477-6483511(+) (11)	NA	NA	NA	AT3G53320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37070.1); Has 11044 Blast hits to 5993 proteins in 551 species: Archae - 8; Bacteria - 1486; Metazoa - 4078; Fungi - 1814; Plants - 348; Viruses - 112; Other Eukaryotes - 3198 (source: NCBI BLink). 	LOC_Os05g03060.1	expressed protein	Medtr7g120900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213486.1.S1_at	A	A1TS	POPTR_0016s08700	POPTR_0016s08700 (11)	scaffold_16:6489344-6489849(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g120900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213487.1.S1_at	A	A1TS	POPTR_0016s08730	POPTR_0016s08730 (11)	scaffold_16:6526225-6526572(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213488.1.S1_at	A	A1TS	POPTR_0016s08740	POPTR_0016s08740 (11)	scaffold_16:6537500-6538025(+) (11)	NA	Q9FZD4	Putative pentatricopeptide repeat-containing protein At1g26500	AT1G26500.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g40820.1	"PPR repeat domain containing protein, putative"	Medtr5g046930.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213489.1.S1_s_at	A	A1TS	POPTR_0016s08750	POPTR_0016s08750 (11)	scaffold_16:6544148-6544813(+) (11)	NA	NA	NA	AT5G02970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g17900.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr7g120960.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213490.1.S1_at	A	A1TS	POPTR_0016s08850	POPTR_0016s08850 (11)	scaffold_16:6669566-6670103(+) (11)	NA	NA	NA	AT4G34950.1	Major facilitator superfamily protein 	NA	NA	Medtr5g022310.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213491.1.S1_at	A	A1TS	POPTR_0016s08900	POPTR_0016s08900 (11)	scaffold_16:6693470-6694127(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g26970.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213492.1.S1_at	A	A1TS	POPTR_0016s08910	POPTR_0016s08910 (9)	scaffold_16:6701392-6701693(+) (11)	NA	NA	NA	AT1G56700.2	"Peptidase C15, pyroglutamyl peptidase I-like "	LOC_Os03g25270.4	"pyrrolidone-carboxylate peptidase, putative, expressed"	Medtr1g102840.2	"Peptidase C15, pyroglutamyl peptidase I "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213493.1.S1_at	A	A1TS	POPTR_0016s08920	POPTR_0016s08920 (11)	scaffold_16:6704813-6705286(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT3G53380.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g17490.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213494.1.S1_at	A	A1TS	POPTR_0016s08940	POPTR_0016s08940 (11)	scaffold_16:6731479-6732454(+) (11)	NA	Q94KB7	MLO-like protein 6	AT1G61560.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr2g110820.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.213495.1.S1_at	A	A1TS	POPTR_0016s08970	POPTR_0016s08970 (11)	scaffold_16:6752656-6753334(-) (11)	NA	O49255	NAC domain-containing protein 29	AT1G61110.1	NAC domain containing protein 25 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g121260.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.213497.1.S1_at	A	A1TS	POPTR_0016s08980	POPTR_0016s08980 (11)	scaffold_16:6799664-6800225(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213499.1.S1_at	A	A1TS	POPTR_0016s09041	POPTR_0016s09041 (11)	scaffold_16:6902538-6903038(+) (11)	NA	NA	NA	AT3G53400.1	BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 47 (TAIR:AT5G03190.1); Has 285 Blast hits to 285 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr7g121400.1	"CPuORF47, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213500.1.S1_at	A	A1TS	POPTR_0016s09060	POPTR_0016s09060 (11)	scaffold_16:6924760-6924864(-) (11)	NA	Q9S7D9	Serine/threonine-protein kinase-like protein CCR1	AT3G09780.1	CRINKLY4 related 1 	LOC_Os03g43670.1	"TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr2g118340.1	Protein kinase; TNFR/CD27/30/40/95 cysteine-rich region; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004872|receptor activity||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213500.1.S1_s_at	A	A1TS	POPTR_0016s09060	POPTR_0016s09060 (11)	scaffold_16:6924293-6924704(-) (11)	NA	Q9S7D9	Serine/threonine-protein kinase-like protein CCR1	AT3G09780.1	CRINKLY4 related 1 	LOC_Os03g43670.1	"TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr2g118340.1	Protein kinase; TNFR/CD27/30/40/95 cysteine-rich region; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004872|receptor activity||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213501.1.S1_at	A	A1MS	POPTR_0016s09080	POPTR_0016s09080 (11)	scaffold_16:6979428-6979563(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213504.1.S1_at	A	A1TS	POPTR_0016s09150	POPTR_0016s09150 (11)	scaffold_16:7100462-7100876(-) (11)	NA	Q653H7	Auxin response factor 18	AT4G30080.1	auxin response factor 16 	LOC_Os06g47150.3	"auxin response factor 18, putative, expressed"	Medtr2g110140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213504.1.S1_s_at	A	A1TS	POPTR_0016s09150	POPTR_0016s09150 (11)	scaffold_16:7100518-7101171(-) (11)	NA	Q653H7	Auxin response factor 18	AT4G30080.1	auxin response factor 16 	LOC_Os06g47150.3	"auxin response factor 18, putative, expressed"	Medtr2g110140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213505.1.S1_at	A	A1TS	POPTR_0016s09170	POPTR_0016s09170 (11)	scaffold_16:7122027-7123009(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT5G03250.1	Phototropic-responsive NPH3 family protein 	LOC_Os01g57230.1	"BTBN1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g022270.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.213506.1.S1_at	A	A1TS	POPTR_0016s09190	POPTR_0016s09190 (11)	scaffold_16:7180541-7181549(-) (11)	NA	Q9ZUU4	"Ribonucleoprotein At2g37220, chloroplastic"	AT2G37220.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g43810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g076830.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213507.1.S1_at	A	A1TS	POPTR_0016s09220	POPTR_0016s09220 (11)	scaffold_16:7202661-7202829(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213508.1.S1_at	A	A1TS	POPTR_0016s09250	POPTR_0016s09250 (11)	scaffold_16:7237476-7237835(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213509.1.S1_at	A	A1TS	POPTR_0016s09260	POPTR_0016s09260 (11)	scaffold_16:7241855-7242198(+) (11)	NA	NA	NA	AT2G37035.1	unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os10g33820.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213510.1.S1_at	A	A1TS	POPTR_0016s09270	POPTR_0016s09270 (11)	scaffold_16:7247581-7247760(-) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT2G37030.1	SAUR-like auxin-responsive protein family  	LOC_Os04g43740.1	"OsSAUR18 - Auxin-responsive SAUR gene family member, expressed"	Medtr1g076620.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213511.1.S1_at	A	A1TS	POPTR_0016s09290	POPTR_0016s09290 (11)	scaffold_16:7297498-7297874(-) (11)	NA	Q8LJT8	TSL-kinase interacting protein 1	AT2G36960.3	TSL-kinase interacting protein 1 	LOC_Os03g13790.2	"myb/SANT domain protein, putative, expressed"	Medtr4g141280.1	"myb/SANT domain protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213512.1.S1_at	A	A1TS	POPTR_0016s09300	POPTR_0016s09300 (11)	scaffold_16:7311235-7313510(-) (11)	NA	Q31P73	Phosphoglycerate kinase	AT1G56190.2	Phosphoglycerate kinase family protein 	LOC_Os10g30550.1	"tRNA methyltransferase, putative, expressed"	Medtr2g077510.1	Phosphoglycerate kinase; ; 	GO:0044260|cellular macromolecule metabolic process||GO:0006400|tRNA modification	GO:0008176|tRNA (guanine-N7-)-methyltransferase activity	NA
PtpAffx.213513.1.S1_at	A	A1TS	POPTR_0016s09310	POPTR_0016s09310 (11)	scaffold_16:7321662-7322439(+) (11)	NA	NA	NA	AT5G03345.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g37880.1	expressed protein	Medtr7g123870.1	"AAA ATPase VAT, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213514.1.S1_at	A	A1TS	POPTR_0016s09320	POPTR_0016s09320 (11)	scaffold_16:7323933-7324096(-) (11)	NA	Q7ZYA2	Transcription initiation factor TFIID subunit 8	AT4G34340.1	TBP-associated factor 8 	LOC_Os12g38620.3	"bromodomain associated family protein, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213515.1.S1_at	A	A1TS	POPTR_0016s09340	POPTR_0016s09340 (11)	scaffold_16:7343436-7343704(-) (11)	NA	NA	NA	AT1G70280.2	NHL domain-containing protein 	LOC_Os02g49770.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213516.1.S1_at	A	A1TS	POPTR_0016s09360	POPTR_0016s09360 (11)	scaffold_16:7350591-7350767(-) (11)	NA	NA	NA	AT3G09870.1	SAUR-like auxin-responsive protein family  	LOC_Os02g05050.1	OsSAUR4 - Auxin-responsive SAUR gene family member	AC235487_13.1	Auxin responsive SAUR protein AC235487.1 70356-69961 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213517.1.S1_at	A	A1TS	POPTR_0016s09570	POPTR_0016s09570 (11)	scaffold_16:7486453-7487026(+) (11)	NA	Q38834	Disease resistance RPP13-like protein 4	AT3G50950.1	HOPZ-ACTIVATED RESISTANCE 1 	LOC_Os09g11020.1	"NBS-LRR disease resistance protein, putative"	Medtr3g043920.1	"Peptidase aspartic, active site; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.213520.1.S1_at	A	A1TS	POPTR_0016s09600	POPTR_0016s09600 (10)	scaffold_16:7537513-7537970(-) (10)//scaffold_840:1752-2210(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213520.1.S1_x_at	A	A1TS	POPTR_0016s09600	POPTR_0016s09600 (11)	scaffold_16:7537513-7537961(-) (11)//scaffold_840:1752-2201(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213522.1.S1_at	A	A1TS	POPTR_0016s09630	POPTR_0016s09630 (11)	scaffold_16:7683358-7683772(-) (11)	NA	NA	NA	AT5G03380.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g05750.1	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr7g123850.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.213524.1.S1_at	A	A1TS	POPTR_0016s09690	POPTR_0016s09690 (11)	scaffold_16:7788951-7789970(-) (11)	NA	Q9M0X9	4-coumarate--CoA ligase-like 7	AT4G05160.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g05780.1	"4-coumarate--CoA ligase-like 7, putative, expressed"	AC235487_7.2	AMP-dependent synthetase and ligase AC235487.1 32119-34637 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213526.1.S1_at	A	A1TS	POPTR_0016s11080	POPTR_0016s11080 (11)	scaffold_16:9654364-9654772(-) (11)	NA	NA	NA	AT5G02390.1	Protein of unknown function (DUF3741) 	LOC_Os12g38260.1	expressed protein	Medtr7g087380.1	"{, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213527.1.S1_at	A	A4TS	POPTR_0001s43910	POPTR_0007s08660 (11)//POPTR_0016s11070 (11)//POPTR_0007s08670 (11)//POPTR_0001s43910 (11)	scaffold_1:44300761-44300801(+) (11)//scaffold_16:9631612-9631652(+) (11)//scaffold_7:7554165-7554205(-) (11)//scaffold_7:7571603-7571643(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213529.1.S1_at	A	A1TS	POPTR_0016s11040	POPTR_0016s11040 (11)	scaffold_16:9491669-9494817(-) (11)	NA	P0AC75	3-deoxy-D-manno-octulosonic-acid transferase	AT5G03770.1	KDO transferase A 	LOC_Os01g63840.1	"3-deoxy-D-manno-octulosonic-acid transferase, putative, expressed"	Medtr1g073570.1	"Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal "	GO:0005975|carbohydrate metabolic process	GO:0016740|transferase activity||GO:0005529|sugar binding	NA
PtpAffx.213532.1.S1_at	A	A1TS	POPTR_0016s11000	POPTR_0016s11000 (11)	scaffold_16:9420285-9420830(+) (11)	NA	Q9FFN1	Pentatricopeptide repeat-containing protein At5g03800	AT5G03800.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g07620.1	"pentatricopeptide, putative, expressed"	Medtr4g032250.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213533.1.S1_at	A	A1TS	POPTR_0016s10980	POPTR_0016s10980 (11)	scaffold_16:9412877-9413394(-) (11)	NA	Q9SCQ2	E3 ubiquitin-protein ligase UPL7	AT3G53090.2	ubiquitin-protein ligase 7 	LOC_Os03g47949.1	"HECT-domain domain containing protein, expressed"	Medtr2g037340.1	IQ calmodulin-binding region; HECT 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.213534.1.S1_at	A	A1TS	POPTR_0016s10920	POPTR_0016s10920 (11)	scaffold_16:9301879-9302258(-) (11)	NA	NA	NA	AT1G32700.1	PLATZ transcription factor family protein 	LOC_Os02g46610.1	"zinc-binding protein, putative, expressed"	Medtr1g074250.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.213534.1.S1_x_at	A	A1TS	POPTR_0016s10920	POPTR_0016s10920 (11)	scaffold_16:9301821-9302733(-) (11)	NA	NA	NA	AT1G32700.1	PLATZ transcription factor family protein 	LOC_Os02g46610.1	"zinc-binding protein, putative, expressed"	Medtr1g074250.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.213535.1.S1_at	A	A1MS	POPTR_0016s10910	POPTR_0016s10910 (11)	scaffold_16:9298841-9298964(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213535.1.S1_x_at	A	A1MS	POPTR_0016s10910	POPTR_0016s10910 (11)	scaffold_16:9298839-9299002(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213536.1.S1_at	A	A1TS	POPTR_0016s10870	POPTR_0016s10870 (11)	scaffold_16:9235217-9235874(-) (11)	NA	Q6YYW5	Expansin-A32	AT2G39700.1	expansin A4 	LOC_Os08g44790.1	"expansin precursor, putative, expressed"	Medtr8g133530.1	"Major pollen allergen Lol pI; Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213536.1.S1_s_at	A	A2TS	POPTR_0016s10730	POPTR_0016s10730 (11)//POPTR_0016s10870 (11)	scaffold_16:9021725-9022330(+) (11)//scaffold_16:9235174-9235802(-) (11)	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os08g44790.1	"expansin precursor, putative, expressed"	Medtr8g133530.1	"Major pollen allergen Lol pI; Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213538.1.S1_at	A	A2TS	POPTR_0001s00210	POPTR_0016s10760 (11)//POPTR_0001s00210 (11)	scaffold_1:22222-22339(+) (11)//scaffold_16:9093026-9093143(+) (11)	NA	O04376	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	AT3G09880.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g47790.3	"transposon protein, putative, unclassified, expressed"	Medtr3g110300.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.213538.1.S1_x_at	A	A2TS	POPTR_0001s00210	POPTR_0016s10760 (10)//POPTR_0001s00210 (10)	scaffold_1:20094-22339(+) (10)//scaffold_16:9090881-9093143(+) (10)	NA	O04376	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	AT3G09880.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g47790.3	"transposon protein, putative, unclassified, expressed"	Medtr3g110300.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.213539.1.S1_at	A	A1TS	POPTR_0016s10730	POPTR_0016s10730 (11)	scaffold_16:9021653-9022287(+) (11)	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os08g44790.1	"expansin precursor, putative, expressed"	Medtr8g133530.1	"Major pollen allergen Lol pI; Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213540.1.S1_at	A	A1MS	POPTR_0016s10720	POPTR_0016s10720 (10)	scaffold_16:9016698-9017380(-) (10)	NA	NA	NA	AT2G22400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g29630.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr3g101990.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213541.1.S1_at	A	A1TS	POPTR_0016s10700	POPTR_0016s10700 (11)	scaffold_16:8999643-9000589(+) (11)	NA	NA	NA	AT5G03420.1	5'-AMP-activated protein kinase-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213544.1.S1_at	A	A1TS	POPTR_0016s10670	POPTR_0016s10670 (11)	scaffold_16:8947597-8947696(-) (11)	NA	Q03943	"Membrane-associated 30 kDa protein, chloroplastic"	AT1G65260.1	plastid transcriptionally active 4 	LOC_Os01g67000.1	"membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed"	Medtr4g092710.2	PspA/IM30 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213545.1.S1_at	A	A1TS	POPTR_0016s10640	POPTR_0016s10640 (11)	scaffold_16:8945654-8945872(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213546.1.S1_s_at	A	A1TS	POPTR_0016s10630	POPTR_0016s10630 (11)	scaffold_16:8933075-8933327(+) (11)	NA	Q9SR32	UPF0161 protein At3g09310	AT3G09310.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF37 (InterPro:IPR002696); Has 5781 Blast hits to 5781 proteins in 1903 species: Archae - 0; Bacteria - 3956; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 3; Other Eukaryotes - 1778 (source: NCBI BLink). 	LOC_Os02g15970.3	"alpha-hemolysin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213547.1.S1_at	A	A1TS	POPTR_0016s10610	POPTR_0016s10610 (11)	scaffold_16:8906206-8907247(+) (11)	NA	Q9FHR7	Probable WRKY transcription factor 49	AT5G43290.1	WRKY DNA-binding protein 49 	LOC_Os05g50610.2	OsWRKY8v2 - Superfamily of TFs having WRKY and zinc finger domains	Medtr5g046700.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.213549.1.S1_at	A	A1TS	POPTR_0016s10600	POPTR_0016s10600 (11)	scaffold_16:8892682-8892720(-) (11)	NA	NA	NA	AT5G02220.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g087490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213549.1.S1_s_at	A	A1TS	POPTR_0016s10600	POPTR_0016s10600 (11)	scaffold_16:8892573-8892746(-) (11)	NA	NA	NA	AT5G02220.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g087490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213550.1.S1_at	A	A1TS	POPTR_0016s10570	POPTR_0016s10570 (11)	scaffold_16:8880250-8881707(+) (11)	NA	P47082	Vacuolar amino acid transporter 1	AT5G02180.1	Transmembrane amino acid transporter family protein 	LOC_Os02g01100.3	"transmembrane amino acid transporter protein, putative, expressed"	Medtr1g120430.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213551.1.S1_at	A	A1TS	POPTR_0016s10560	POPTR_0016s10560 (11)	scaffold_16:8868342-8868522(-) (11)	NA	Q9ZNS1	40S ribosomal protein S7	AT3G02560.2	Ribosomal protein S7e family protein 	LOC_Os05g27940.1	"40S ribosomal protein S7, putative, expressed"	Medtr6g022820.1	Ribosomal protein S7E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.213551.1.S1_x_at	A	A1TS	POPTR_0016s10560	POPTR_0016s10560 (11)	scaffold_16:8868275-8868522(-) (11)	NA	Q9ZNS1	40S ribosomal protein S7	AT3G02560.2	Ribosomal protein S7e family protein 	LOC_Os05g27940.1	"40S ribosomal protein S7, putative, expressed"	Medtr6g022820.1	Ribosomal protein S7E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.213552.1.S1_at	A	A1TS	POPTR_0016s10550	POPTR_0016s10550 (11)	scaffold_16:8858689-8859350(-) (11)	NA	Q5AYT7	Hsp70 nucleotide exchange factor fes1	AT3G09350.1	Fes1A 	LOC_Os03g60780.1	"armadillo/beta-catenin-like repeat containing protein, expressed"	Medtr4g019550.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213552.1.S1_s_at	A	A1TS	POPTR_0016s10550	POPTR_0016s10550 (11)	scaffold_16:8858475-8859646(-) (11)	NA	Q5AYT7	Hsp70 nucleotide exchange factor fes1	AT3G09350.1	Fes1A 	LOC_Os03g60780.1	"armadillo/beta-catenin-like repeat containing protein, expressed"	Medtr4g019550.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213553.1.S1_at	A	A1MS	POPTR_0016s10520	POPTR_0016s10520 (11)	scaffold_16:8831279-8831813(+) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT2G37710.1	receptor lectin kinase 	LOC_Os03g56180.1	"legume lectins beta domain containing protein, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.213554.1.S1_at	A	A1TS	POPTR_0016s10500	POPTR_0016s10500 (11)	scaffold_16:8811617-8812565(+) (11)	NA	Q7X9A0	"Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic"	AT2G39730.1	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.213555.1.S1_s_at	A	A1TS	POPTR_0016s10490	POPTR_0016s10490 (11)	scaffold_16:8779834-8780991(+) (11)	NA	NA	NA	AT2G37730.1	Protein of unknown function (DUF604) 	LOC_Os03g16334.1	"fringe-related protein, putative, expressed"	Medtr4g079780.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213557.1.S1_at	A	A1TS	POPTR_0016s10480	POPTR_0016s10480 (11)	scaffold_16:8751425-8751865(+) (11)	NA	Q38895	Transcriptional regulator SUPERMAN	AT3G53820.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os07g01180.1	"ZOS7-01 - C2H2 zinc finger protein, expressed"	Medtr4g084500.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.213558.1.S1_at	A	A1TS	POPTR_0016s10460	POPTR_0016s10460 (11)	scaffold_16:8711030-8711505(+) (11)	NA	Q9LHS9	Probable transcriptional regulator RABBIT EARS	AT2G37740.1	zinc-finger protein 10 	LOC_Os05g20930.1	"ZOS5-07 - C2H2 zinc finger protein, expressed"	Medtr4g018860.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.213561.1.S1_at	A	A1TS	POPTR_0016s10440	POPTR_0016s10440 (11)	scaffold_16:8676503-8678465(-) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT3G53830.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os01g62810.1	"regulator of chromosome condensation, putative, expressed"	Medtr3g092040.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213562.1.S1_at	A	A1TS	POPTR_0016s10430	POPTR_0016s10430 (11)	scaffold_16:8675348-8676211(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g06330.1	"CPuORF6 - conserved peptide uORF-containing transcript, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213564.1.S1_at	A	A1TS	POPTR_0016s10370	POPTR_0016s10370 (11)	scaffold_16:8619801-8620291(-) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os01g62870.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.213565.1.S1_at	A	A1TS	POPTR_0016s10360	POPTR_0016s10360 (11)	scaffold_16:8600847-8601401(+) (11)	NA	Q8GWC3	PRA1 family protein A2	AT5G05987.1	prenylated RAB acceptor 1.A2 	LOC_Os05g38160.1	"prenylated rab acceptor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213566.1.S1_at	A	A1TS	POPTR_0016s10270	POPTR_0016s10270 (11)	scaffold_16:8470838-8471271(-) (11)	NA	Q3E8X3	Probable peptide/nitrate transporter At5g28470	AT5G28470.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113050.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.213567.1.S1_at	A	A1TS	POPTR_0016s10260	POPTR_0016s10260 (11)	scaffold_16:8456967-8457138(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213570.1.S1_at	A	A1TS	POPTR_0016s10210	POPTR_0016s10210 (11)	scaffold_16:8359064-8359479(-) (11)	NA	NA	NA	AT3G09280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213571.1.S1_at	A	A1TS	POPTR_0016s10160	POPTR_0016s10160 (11)	scaffold_16:8318447-8318731(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213572.1.S1_at	A	A1TS	POPTR_0016s10130	POPTR_0016s10130 (11)	scaffold_16:8307179-8307813(+) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G02010.1	RHO guanyl-nucleotide exchange factor 7 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.213573.1.S1_at	A	A1TS	POPTR_0016s10100	POPTR_0016s10100 (11)	scaffold_16:8247927-8249714(+) (11)	NA	Q9ZUI6	AP-1 complex subunit gamma-2	AT1G60070.1	"Adaptor protein complex AP-1, gamma subunit "	LOC_Os06g07090.2	"AP-1 complex subunit gamma-1, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.213574.1.S1_at	A	A1TS	POPTR_0016s10060	POPTR_0016s10060 (11)	scaffold_16:8188790-8188916(-) (11)	NA	NA	NA	AT3G54000.1	CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr7g071270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213574.1.S1_s_at	A	A1TS	POPTR_0016s10060	POPTR_0016s10060 (11)	scaffold_16:8188918-8189391(-) (11)	NA	NA	NA	AT3G54000.1	CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr7g071270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213575.1.S1_at	A	A2TS	POPTR_0016s10010	POPTR_0016s10010 (11)//POPTR_0016s10020 (11)	scaffold_16:8138989-8139332(+) (11)//scaffold_16:8149765-8150108(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22380.1	UDP-glucosyl transferase 85A3 	LOC_Os07g30330.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g033170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213576.1.S1_at	A	A1TS	POPTR_0016s10000	POPTR_0016s10000 (11)	scaffold_16:8127543-8128133(-) (11)	NA	NA	NA	AT5G01030.2	Protein of unknown function (DUF3527) 	LOC_Os03g16070.3	expressed protein	Medtr2g117390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213577.1.S1_at	A	A1TS	POPTR_0016s09970	POPTR_0016s09970 (11)	scaffold_16:8095923-8096952(-) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT3G54030.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213578.1.S1_s_at	A	A1TS	POPTR_0016s09960	POPTR_0016s09960 (11)	scaffold_16:8092797-8095032(+) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g63150.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213583.1.S1_at	A	A1TS	POPTR_0016s11550	POPTR_0016s11550 (9)	scaffold_16:10780908-10782650(-) (11)	NA	O81223	Calcineurin B-like protein 4	AT5G24270.2	Calcium-binding EF-hand family protein 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr3g124000.2	EF-Hand type 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.213584.1.S1_at	A	A1MS	POPTR_0016s11550	POPTR_0016s11550 (9)	scaffold_16:10783074-10783953(-) (9)	NA	O81223	Calcineurin B-like protein 4	AT5G24270.2	Calcium-binding EF-hand family protein 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr3g124000.2	EF-Hand type 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.213585.1.S1_at	A	A1TS	POPTR_0016s11560	POPTR_0016s11560 (11)	scaffold_16:10793878-10794249(+) (11)	NA	P24923	Cell division control protein 2 homolog 1 (Fragment)	AT3G48750.1	cell division control 2 	LOC_Os03g01850.1	"cyclin-dependent kinase A-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213586.1.S1_at	A	A1TS	POPTR_0091s00240	POPTR_0091s00240 (11)	scaffold_91:18941-19942(-) (11)	NA	P93101	Cell division control protein 2 homolog	AT3G48750.1	cell division control 2 	LOC_Os03g02680.1	"cyclin-dependent kinase A-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213587.1.S1_at	A	A2TS	POPTR_0016s11570	POPTR_0016s11570 (11)//POPTR_0091s00230 (11)	scaffold_16:10796000-10796292(-) (11)//scaffold_91:16907-17199(+) (11)	NA	Q9FM89	F-box/FBD/LRR-repeat protein At5g56420	AT5G56420.2	F-box/RNI-like/FBD-like domains-containing protein 	LOC_Os07g06500.1	"OsFBL34 - F-box domain and LRR containing protein, expressed"	Medtr7g143210.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213588.1.S1_at	A	A1TS	POPTR_0016s11580	POPTR_0016s11580 (11)	scaffold_16:10807963-10809057(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g03060.1	"cyclin-dependent kinase A-2, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213590.1.S1_at	A	A1TS	POPTR_0016s11621	POPTR_0016s11621 (11)	scaffold_16:10844575-10845333(+) (11)	NA	P25851	"Fructose-1,6-bisphosphatase, chloroplastic"	AT3G54050.2	high cyclic electron flow 1 	LOC_Os03g16050.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.213591.1.S1_at	A	A1TS	POPTR_0016s11630	POPTR_0016s11630 (11)	scaffold_16:10845850-10846410(-) (11)	NA	NA	NA	AT2G37960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g01008.1	expressed protein	Medtr4g015560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213592.1.S1_at	A	A1TS	POPTR_0016s11690	POPTR_0016s11690 (11)	scaffold_16:10884465-10885047(+) (11)	NA	Q42896	Fructokinase-2	AT3G54090.1	fructokinase-like 1 	LOC_Os01g63220.3	"kinase, pfkB family, putative, expressed"	Medtr5g047610.1	PfkB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213593.1.S1_at	A	A1TS	POPTR_0016s11700	POPTR_0016s11700 (11)	scaffold_16:10889534-10890195(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G54100.1	O-fucosyltransferase family protein 	LOC_Os01g63230.1	"growth regulator related protein, putative, expressed"	Medtr4g015740.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213594.1.S1_at	A	A1TS	POPTR_0016s11700	POPTR_0016s11700 (11)	scaffold_16:10892170-10892512(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G54100.1	O-fucosyltransferase family protein 	LOC_Os01g63230.1	"growth regulator related protein, putative, expressed"	Medtr4g015740.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213595.1.S1_at	A	A1TS	POPTR_0016s11710	POPTR_0016s11710 (11)	scaffold_16:10899202-10900154(-) (11)	NA	NA	NA	AT2G38000.1	chaperone protein dnaJ-related 	LOC_Os05g25210.1	expressed protein	Medtr2g085150.1	"Uncharacterized protein C3orf32, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213596.1.S1_at	A	A1TS	POPTR_0016s11720	POPTR_0016s11720 (11)	scaffold_16:10903318-10903667(+) (11)	NA	NA	NA	AT5G04610.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g40890.1	"spermidine synthase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213597.1.S1_at	A	A1TS	POPTR_0016s11745	POPTR_0016s11745 (11)	scaffold_16:10928746-10930105(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213599.1.S1_at	A	A1TS	POPTR_0016s11780	POPTR_0016s11780 (11)	scaffold_16:10942947-10944235(-) (11)	NA	NA	NA	AT2G38025.1	Cysteine proteinases superfamily protein 	LOC_Os03g15930.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr4g012170.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213600.1.S1_at	A	A1TS	POPTR_0016s11800	POPTR_0016s11800 (11)	scaffold_16:10961208-10961423(-) (11)	NA	Q38944	Probable steroid reductase DET2	AT2G38050.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os01g63260.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr4g097340.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.213601.1.S1_at	A	A1TS	POPTR_0016s11810	POPTR_0016s11810 (10)	scaffold_16:10977053-10977358(+) (11)	NA	O55236	mRNA-capping enzyme	AT3G09100.2	mRNA capping enzyme family protein 	LOC_Os12g09120.1	"mRNA-capping enzyme, putative, expressed"	Medtr4g012250.1	"Dual specificity protein phosphatase; mRNA capping enzyme; Nucleic acid-binding, OB-fold, subgroup "	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0004484|mRNA guanylyltransferase activity||GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.213602.1.S1_at	A	A1TS	POPTR_0016s11820	POPTR_0016s11820 (11)	scaffold_16:11006638-11006960(+) (11)	NA	NA	NA	AT3G09090.1	defective in exine formation protein (DEX1) 	LOC_Os03g61050.1	"FG-GAP repeat-containing protein, putative, expressed"	Medtr4g012280.1	"DEX1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213603.1.S1_at	A	A1TS	POPTR_0016s11870	POPTR_0016s11870 (9)	scaffold_16:11031103-11031905(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213604.1.S1_at	A	A1TS	POPTR_0016s11890	POPTR_0016s11890 (11)	scaffold_16:11057052-11057363(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213606.1.S1_at	A	A1TS	POPTR_0016s11910	POPTR_0016s11910 (11)	scaffold_16:11101586-11102176(+) (11)	NA	Q9SS81	Pentatricopeptide repeat-containing protein At3g09060	AT3G09060.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g63400.2	"PPR repeat containing protein, expressed"	Medtr8g112280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213607.1.S1_at	A	A1TS	POPTR_0016s11940	POPTR_0016s11940 (11)	scaffold_16:11115411-11115805(-) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.213608.1.S1_at	A	A1TS	POPTR_0016s11970	POPTR_0016s11970 (11)	scaffold_16:11146581-11147530(+) (11)	NA	Q9FJD6	Putative respiratory burst oxidase homolog protein H	AT5G60010.1	ferric reductase-like transmembrane component family protein 	LOC_Os05g38980.1	"respiratory burst oxidase, putative, expressed"	Medtr7g067680.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.21361.1.S1_at	A	A1TS	POPTR_0001s24300	POPTR_0001s24300 (11)	scaffold_1:23629327-23631368(+) (11)	NA	Q5RF83	Cold-inducible RNA-binding protein	AT3G46020.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g31810.2	"RNA recognition motif containing protein, putative, expressed"	Medtr2g114550.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213610.1.S1_at	A	A1TS	POPTR_0016s12000	POPTR_0016s12000 (11)	scaffold_16:11219989-11220164(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213611.1.S1_at	A	A1TS	POPTR_0016s12040	POPTR_0016s12040 (10)	scaffold_16:11289837-11290180(-) (10)	NA	NA	NA	AT3G09030.1	BTB/POZ domain-containing protein 	LOC_Os03g15800.1	"B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed"	Medtr7g104990.1	K+ channel tetramerisation 	GO:0006813|potassium ion transport	GO:0005249|voltage-gated potassium channel activity	GO:0008076|voltage-gated potassium channel complex
PtpAffx.213615.1.S1_at	A	A1TS	POPTR_0016s12120	POPTR_0016s12120 (11)	scaffold_16:11436548-11436706(-) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT1G74720.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os01g40480.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr8g112880.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213615.1.S1_s_at	A	A1TS	POPTR_0016s12120	POPTR_0016s12120 (11)	scaffold_16:11436173-11436557(-) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT1G74720.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os01g40480.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr8g112880.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213617.1.S1_at	A	A1TS	POPTR_0016s12180	POPTR_0016s12180 (11)	scaffold_16:11518414-11518958(+) (11)	NA	NA	NA	AT5G01260.2	Carbohydrate-binding-like fold 	LOC_Os05g37450.1	"starch binding domain containing protein, putative, expressed"	Medtr4g012900.1	"Glycoside hydrolase, starch-binding; "	GO:0005975|carbohydrate metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.213619.1.S1_at	A	A1TS	POPTR_0016s12210	POPTR_0016s12210 (9)	scaffold_16:11550607-11550686(+) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213619.1.S1_s_at	A	A1TS	POPTR_0016s12210	POPTR_0016s12210 (11)	scaffold_16:11548558-11550097(+) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213620.1.S1_at	A	A1TS	POPTR_0016s12230	POPTR_0016s12230 (11)	scaffold_16:11571806-11572593(-) (11)	NA	NA	NA	AT2G40070.1	BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g04880.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g025430.1	"En/Spm-like transposon protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213621.1.S1_at	A	A1TS	POPTR_0016s12240	POPTR_0016s12240 (11)	scaffold_16:11598181-11599919(-) (11)	NA	Q9C777	Protein yippee-like At3g11230	AT3G11230.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr5g089880.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213622.1.S1_at	A	A1TS	POPTR_0016s12270	POPTR_0016s12270 (10)	scaffold_16:11612045-11613267(-) (10)	NA	NA	NA	AT5G01520.1	RING/U-box superfamily protein 	LOC_Os07g46700.3	"zinc finger, RING-type, putative, expressed"	Medtr4g013020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213623.1.S1_at	A	A1TS	POPTR_0016s12310	POPTR_0016s12310 (11)	scaffold_16:11657519-11657606(+) (11)	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g166250.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.213624.1.S1_at	A	A1TS	POPTR_0016s12350	POPTR_0016s12350 (11)	scaffold_16:11675032-11675240(-) (11)	NA	Q9M028	LIMR family protein At5g01460	AT5G01460.1	LMBR1-like membrane protein 	LOC_Os06g03760.2	"LMBR1 integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213625.1.S1_at	A	A1TS	POPTR_0016s12360	POPTR_0016s12360 (11)	scaffold_16:11706675-11706908(+) (11)	NA	NA	NA	AT5G01450.1	RING/U-box superfamily protein 	LOC_Os05g44550.1	"zinc finger family protein, putative"	Medtr1g023680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213626.1.S1_at	A	A1TS	POPTR_0016s12380	POPTR_0016s12380 (11)	scaffold_16:11722382-11722692(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213627.1.S1_s_at	A	A1TS	POPTR_0016s12430	POPTR_0016s12430 (11)	scaffold_16:11788995-11789483(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os08g25820.2	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g104840.1	"Peptidase M22, glycoprotease; Homeodomain-related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213628.1.S1_s_at	A	A1TS	POPTR_0016s12470	POPTR_0016s12470 (11)	scaffold_16:11908781-11908977(+) (11)	NA	Q9SDW0	Trihelix transcription factor GT-3a	AT5G01380.1	Homeodomain-like superfamily protein 	LOC_Os04g51320.1	"transcription factor TF2, putative, expressed"	Medtr5g026680.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213629.1.S1_at	A	A1TS	POPTR_0016s12510	POPTR_0016s12510 (11)	scaffold_16:11956869-11957521(-) (11)	NA	NA	NA	AT5G05570.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g49300.1	expressed protein	Medtr5g090270.1	Synaptobrevin; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213630.1.S1_at	A	A1TS	POPTR_0016s12520	POPTR_0016s12520 (11)	scaffold_16:11958792-11959560(-) (11)	NA	Q9WU70	Syntaxin-binding protein 5	AT5G05570.2	transducin family protein / WD-40 repeat family protein 	LOC_Os07g49300.1	expressed protein	Medtr5g090270.1	Synaptobrevin; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213630.1.S1_s_at	A	A1TS	POPTR_0016s12520	POPTR_0016s12520 (11)	scaffold_16:11958301-11959411(-) (11)	NA	Q9WU70	Syntaxin-binding protein 5	AT5G05570.2	transducin family protein / WD-40 repeat family protein 	LOC_Os07g49300.1	expressed protein	Medtr5g090270.1	Synaptobrevin; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213631.1.S1_at	A	A1TS	POPTR_0016s12530	POPTR_0016s12530 (11)	scaffold_16:11969357-11969535(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213632.1.S1_at	A	A1TS	POPTR_0016s12550	POPTR_0016s12550 (11)	scaffold_16:11983696-11983861(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213633.1.S1_at	A	A1TS	POPTR_0016s12570	POPTR_0016s12570 (11)	scaffold_16:11985751-11987335(-) (11)	NA	Q6GM29	Phosphatidylinositide phosphatase SAC1	AT3G51830.1	SAC domain-containing protein 8 	LOC_Os03g18080.2	"SacI homology domain containing protein, expressed"	Medtr5g023860.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213634.1.S1_at	A	A1TS	POPTR_0016s12640	POPTR_0016s12640 (11)	scaffold_16:12022750-12023168(-) (11)	POPTR_0016s12650 (7)	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os06g30810.1	OsMADS75 - MADS-box family gene with M-alpha type-box	Medtr2g130230.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.213636.1.S1_at	A	A1TS	POPTR_0016s12710	POPTR_0016s12710 (11)	scaffold_16:12085955-12086445(+) (11)	NA	O49343	Pentatricopeptide repeat-containing protein At2g30780	AT2G30780.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g33760.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g083850.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213637.1.S1_at	A	A1TS	POPTR_0016s12750	POPTR_0016s12750 (11)	scaffold_16:12126633-12128654(+) (11)	NA	Q80TN4	DnaJ homolog subfamily C member 16	AT3G08970.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os03g18200.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g075620.1	"Heat shock protein DnaJ, N-terminal; Thioredoxin-like fold "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.213638.1.S1_at	A	A1TS	POPTR_0016s12770	POPTR_0016s12770 (11)	scaffold_16:12147333-12148324(-) (11)	NA	Q9M041	Transcription factor bHLH140	AT5G01310.1	APRATAXIN-like 	LOC_Os03g18210.1	"basic helix-loop-helix, putative, expressed"	Medtr1g031010.1	Appr-1-p processing; Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213639.1.S1_at	A	A1TS	POPTR_0016s12780	POPTR_0016s12780 (11)	scaffold_16:12152249-12152555(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213640.1.S1_x_at	A	A1TS	POPTR_0016s12795	POPTR_0016s12795 (11)	scaffold_16:12156299-12156474(+) (11)	NA	NA	NA	AT2G40730.1	Protein kinase family protein with ARM repeat domain 	LOC_Os01g60440.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213642.1.S1_at	A	A1TS	POPTR_0016s12810	POPTR_0016s12810 (11)	scaffold_16:12182581-12182780(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os04g40440.1	expressed protein	Medtr3g167060.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.213643.1.S1_at	A	A1TS	POPTR_0016s12820	POPTR_0016s12820 (11)	scaffold_16:12186529-12187011(+) (11)	NA	Q07423	Hexose carrier protein HEX6	AT5G61520.1	Major facilitator superfamily protein 	LOC_Os10g41190.1	"transporter family protein, putative, expressed"	Medtr3g009530.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.213644.1.S1_at	A	A1TS	POPTR_0016s12860	POPTR_0016s12860 (11)	scaffold_16:12214902-12215312(+) (11)	NA	O26373	UPF0098 protein MTH_273	AT5G01300.1	PEBP (phosphatidylethanolamine-binding protein) family protein 	LOC_Os05g39250.1	"phosphatidylethanolamine-binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213645.1.S1_at	A	A1TS	POPTR_0016s12870	POPTR_0016s12870 (11)	scaffold_16:12225355-12225647(+) (11)	NA	Q08C72	Pre-mRNA-splicing factor CWC22 homolog	AT1G80930.1	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os12g15420.1	"nucampholin, putative, expressed"	Medtr7g112210.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.213645.1.S1_s_at	A	A1TS	POPTR_0016s12870	POPTR_0016s12870 (11)	scaffold_16:12224660-12225354(+) (11)	NA	Q08C72	Pre-mRNA-splicing factor CWC22 homolog	AT1G80930.1	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os12g15420.1	"nucampholin, putative, expressed"	Medtr7g112210.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.213646.1.S1_at	A	A1TS	POPTR_0016s12890	POPTR_0016s12890 (11)	scaffold_16:12232100-12232254(-) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	NA	NA	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213647.1.S1_at	A	A1TS	POPTR_0016s12910	POPTR_0016s12910 (11)	scaffold_16:12246594-12250382(-) (11)	NA	Q8GYB1	"Nudix hydrolase 15, mitochondrial"	AT1G28960.2	nudix hydrolase homolog 15 	LOC_Os08g28860.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr2g018810.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.213648.1.S1_at	A	A1TS	POPTR_0016s12930	POPTR_0016s12930 (11)	scaffold_16:12260098-12262431(+) (11)	NA	NA	NA	AT3G58120.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g55150.1	"bZIP transcription factor domain containing protein, expressed"	AC233675_20.1	Basic leucine zipper AC233675.1 92514-95337 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.213649.1.S1_at	A	A1TS	POPTR_0016s12940	POPTR_0016s12940 (10)	scaffold_16:12264327-12264827(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G38300.1	myb-like HTH transcriptional regulator family protein 	LOC_Os12g01490.1	"MYB family transcription factor, putative, expressed"	Medtr7g075810.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213650.1.S1_at	A	A2TS	POPTR_0016s12970	POPTR_0016s13000 (11)//POPTR_0016s12970 (11)	scaffold_16:12293221-12294731(+) (11)//scaffold_16:12339451-12340961(+) (11)	NA	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os01g61240.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative"	Medtr4g012080.1	Gamma interferon inducible lysosomal thiol reductase GILT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213651.1.S1_s_at	A	A4TS	POPTR_0012s10920	POPTR_0016s13020 (11)//POPTR_0016s12980 (11)//POPTR_0012s10920 (11)//POPTR_0012s10950 (11)	scaffold_12:11587836-11588323(-) (11)//scaffold_12:11599688-11600163(+) (11)//scaffold_16:12311157-12311638(+) (11)//scaffold_16:12347065-12347546(+) (11)	NA	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os03g18454.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed"	Medtr3g034400.1	Gamma interferon inducible lysosomal thiol reductase GILT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213652.1.S1_at	A	A2TS	POPTR_0016s12990	POPTR_0016s13050 (11)//POPTR_0016s12990 (11)	scaffold_16:12317088-12317617(-) (11)//scaffold_16:12351545-12352074(-) (11)	NA	Q5NE24	Nodulation-signaling pathway 2 protein	AT3G03450.1	RGA-like 2 	LOC_Os11g31100.1	"gibberellin response modulator protein, putative"	Medtr7g075860.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213653.1.S1_at	A	A1TS	POPTR_0016s13060	POPTR_0016s13060 (11)	scaffold_16:12361829-12362063(+) (11)	POPTR_0016s13120 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213655.1.S1_at	A	A1TS	POPTR_0016s13070	POPTR_0016s13070 (11)	scaffold_16:12366067-12366924(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT3G08870.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os10g38960.1	"lectin-like receptor kinase, putative"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.213656.1.S1_s_at	A	A1MS	POPTR_0016s13090	POPTR_0016s13090 (11)	scaffold_16:12383149-12385857(+) (11)	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213657.1.S1_at	A	A1MS	POPTR_0016s13120	POPTR_0016s13120 (10)	scaffold_16:12391163-12391333(+) (10)	POPTR_0437s00210 (7)	NA	NA	AT2G01570.1	GRAS family transcription factor family protein 	NA	NA	Medtr7g075860.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213659.1.S1_at	A	A1TS	POPTR_0016s13170	POPTR_0016s13170 (11)	scaffold_16:12420643-12421188(-) (11)	NA	NA	NA	AT3G51760.2	Protein of unknown function (DUF688) 	NA	NA	Medtr7g075850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21366.1.A1_s_at	A	A1TS	POPTR_0014s06540	POPTR_0014s06540 (11)	scaffold_14:4958553-4959239(-) (11)	NA	O82531	Proteasome subunit beta type-1	AT3G60820.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os09g32800.1	"peptidase, T1 family, putative, expressed"	Medtr2g117530.1	"20S proteasome, A and B subunits "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.21366.2.A1_at	A	A1MS	POPTR_0014s06540	POPTR_0014s06540 (11)	scaffold_14:4959077-4959202(-) (11)	NA	O82531	Proteasome subunit beta type-1	AT3G60820.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os09g32800.1	"peptidase, T1 family, putative, expressed"	Medtr2g117530.1	"20S proteasome, A and B subunits "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.213660.1.S1_at	A	A1TS	POPTR_0016s13180	POPTR_0016s13180 (11)	scaffold_16:12422009-12422566(-) (11)	NA	O65020	Ethylene-overproduction protein 1	AT3G51770.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os03g18360.1	"BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr4g012110.1	"Ethylene-overproduction protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213661.1.S1_at	A	A1TS	POPTR_0016s13180	POPTR_0016s13180 (11)	scaffold_16:12426548-12427099(-) (11)	NA	O65020	Ethylene-overproduction protein 1	AT3G51770.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os03g18360.1	"BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr4g012110.1	"Ethylene-overproduction protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213662.1.S1_at	A	A1TS	POPTR_0016s13190	POPTR_0016s13190 (11)	scaffold_16:12440714-12442060(+) (11)	NA	NA	NA	AT5G01590.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr4g012040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213663.1.S1_at	A	A1TS	POPTR_0016s13200	POPTR_0016s13200 (11)	scaffold_16:12445360-12445640(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213664.1.S1_at	A	A1TS	POPTR_0016s13350	POPTR_0016s13350 (11)	scaffold_16:12539965-12540911(-) (11)	NA	Q9LN63	Protein BRASSINAZOLE-RESISTANT 2	AT1G19350.3	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os01g08180.1	"BRASSINAZOLE-RESISTANT 2, putative"	Medtr5g026370.3	"Glycoside hydrolase, family 14; BZR1, transcriptional repressor; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213665.1.S1_at	A	A1TS	POPTR_0016s13360	POPTR_0016s13360 (11)	scaffold_16:12544123-12544921(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213666.1.S1_at	A	A1TS	POPTR_0016s13370	POPTR_0016s13370 (11)	scaffold_16:12572380-12574349(+) (11)	NA	NA	NA	AT2G38330.1	MATE efflux family protein 	LOC_Os12g01580.1	"MATE efflux protein, putative, expressed"	Medtr5g106650.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.213667.1.S1_at	A	A1TS	POPTR_0016s13380	POPTR_0016s13380 (11)	scaffold_16:12575908-12576448(-) (11)	NA	Q0JQF7	Dehydration-responsive element-binding protein 2A	AT2G38340.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g07120.1	"AP2 domain containing protein, expressed"	Medtr7g076360.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.213668.1.S1_at	A	A1TS	POPTR_0016s13400	POPTR_0016s13400 (11)	scaffold_16:12584228-12584666(-) (11)	NA	Q9SCT4	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2	AT3G51740.1	inflorescence meristem receptor-like kinase 2 	LOC_Os03g18630.1	"receptor-like kinase RHG1, putative, expressed"	Medtr4g011440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213670.1.S1_at	A	A1TS	POPTR_0016s13420	POPTR_0016s13420 (11)	scaffold_16:12591540-12591879(-) (11)	NA	P81748	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os12g01680.1	"macrophage migration inhibitory factor, putative"	Medtr8g129760.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213670.1.S1_s_at	A	A1TS	POPTR_0016s13420	POPTR_0016s13420 (11)	scaffold_16:12591569-12592286(-) (11)	NA	P81748	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os12g01680.1	"macrophage migration inhibitory factor, putative"	Medtr8g129760.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213672.1.S1_at	A	A1TS	POPTR_0016s13460	POPTR_0016s13460 (11)	scaffold_16:12622043-12622346(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os12g11930.1	"disease resistance protein SlVe2 precursor, putative, expressed"	Medtr5g093720.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.213672.1.S1_x_at	A	A1TS	POPTR_0016s13460	POPTR_0016s13460 (11)	scaffold_16:12622043-12622346(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os12g11930.1	"disease resistance protein SlVe2 precursor, putative, expressed"	Medtr5g093720.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.213674.1.S1_at	A	A2TS	POPTR_0016s13470	POPTR_0016s13470 (11)//POPTR_0016s13480 (11)	scaffold_16:12657525-12657813(-) (11)//scaffold_16:12667413-12667701(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os01g06520.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr7g008840.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.213674.1.S1_x_at	A	A2TS	POPTR_0016s13470	POPTR_0016s13470 (11)//POPTR_0016s13480 (11)	scaffold_16:12657312-12657813(-) (11)//scaffold_16:12667200-12667701(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os01g06520.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr7g008840.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.213676.1.S1_at	A	A1TS	POPTR_0064s00270	POPTR_0064s00270 (11)	scaffold_64:67300-67606(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os01g06520.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr7g008990.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.213677.1.S1_at	A	A1TS	POPTR_0064s00240	POPTR_0064s00240 (10)	scaffold_64:45874-46249(+) (10)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os01g06520.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr7g008990.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.213679.1.S1_s_at	A	A1TS	POPTR_0064s00220	POPTR_0064s00220 (11)	scaffold_64:23594-23745(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os12g11930.1	"disease resistance protein SlVe2 precursor, putative, expressed"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.213682.1.S1_at	A	A1TS	POPTR_0016s13480	POPTR_0016s13480 (11)	scaffold_16:12668970-12669501(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os01g06900.1	"verticillium wilt disease resistance protein Ve2, putative, expressed"	Medtr7g008900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.213683.1.S1_at	A	A1TS	POPTR_0016s13520	POPTR_0016s13520 (11)	scaffold_16:12702085-12702439(+) (11)	NA	Q68F70	Integrator complex subunit 4	AT3G08800.1	ARM repeat superfamily protein 	LOC_Os03g17340.1	expressed protein	Medtr7g076400.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213684.1.S1_at	A	A1TS	POPTR_0016s13530	POPTR_0016s13530 (11)	scaffold_16:12705512-12707160(-) (11)	NA	O94889	Kelch-like protein 18	AT5G01660.1	"CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). "	LOC_Os01g07140.2	"kelch repeat-containing protein, putative, expressed"	Medtr7g076440.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213685.1.S1_at	A	A1TS	POPTR_0016s13540	POPTR_0016s13540 (11)	scaffold_16:12725859-12726858(+) (11)	NA	Q9SCU1	Patellin-6	AT3G51670.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os05g27820.1	"patellin protein, putative, expressed"	Medtr7g076560.1	"Patellin-5, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213685.1.S1_s_at	A	A1TS	POPTR_0016s13540	POPTR_0016s13540 (11)	scaffold_16:12725890-12726892(+) (11)	NA	Q9SCU1	Patellin-6	AT3G51670.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os05g27820.1	"patellin protein, putative, expressed"	Medtr7g076560.1	"Patellin-5, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213686.1.S1_at	A	A1TS	POPTR_0016s13560	POPTR_0016s13560 (11)	scaffold_16:12734944-12735780(-) (11)	NA	Q6NKS1	Probable protein phosphatase 2C 65	AT5G01700.2	Protein phosphatase 2C family protein 	LOC_Os12g01770.1	"protein phosphatase 2c, putative, expressed"	Medtr7g076600.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213688.1.S1_at	A	A1TS	POPTR_0016s13590	POPTR_0016s13590 (11)	scaffold_16:12762135-12762267(+) (11)	NA	Q8LE26	UPF0497 membrane protein At2g38480	AT2G38480.1	Uncharacterised protein family (UPF0497) 	LOC_Os05g27790.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g076970.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.213688.1.S1_s_at	A	A1TS	POPTR_0016s13590	POPTR_0016s13590 (11)	scaffold_16:12761704-12762113(+) (11)	NA	Q8LE26	UPF0497 membrane protein At2g38480	AT2G38480.1	Uncharacterised protein family (UPF0497) 	LOC_Os05g27790.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g076970.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.213689.1.S1_at	A	A1TS	POPTR_0016s13600	POPTR_0016s13600 (11)	scaffold_16:12762699-12763374(-) (11)	NA	Q8S8P5	Probable WRKY transcription factor 33	AT2G38470.1	WRKY DNA-binding protein 33 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g076980.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.213690.1.S1_at	A	A1TS	POPTR_0016s13620	POPTR_0016s13620 (10)	scaffold_16:12783249-12784248(-) (10)	NA	Q923U9	Solute carrier family 40 member 1	AT5G03570.2	iron regulated 2 	LOC_Os06g36450.1	"ferroportin1 domain containing protein, expressed"	NA	NA	GO:0006826|iron ion transport	GO:0005381|iron ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.213691.1.S1_at	A	A1TS	POPTR_0016s13620	POPTR_0016s13620 (10)	scaffold_16:12785956-12786410(-) (10)	NA	Q923U9	Solute carrier family 40 member 1	AT5G03570.2	iron regulated 2 	LOC_Os06g36450.1	"ferroportin1 domain containing protein, expressed"	NA	NA	GO:0006826|iron ion transport	GO:0005381|iron ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.213692.1.S1_at	A	A2TS	POPTR_0016s13630	POPTR_0016s13630 (11)//POPTR_0386s00200 (11)	scaffold_16:12790735-12790808(-) (11)//scaffold_386:16380-16453(+) (11)	NA	Q9I9R3	Solute carrier family 40 member 1	AT5G03570.2	iron regulated 2 	LOC_Os06g36450.1	"ferroportin1 domain containing protein, expressed"	NA	NA	GO:0006826|iron ion transport	GO:0005381|iron ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.213692.1.S1_s_at	A	A2TS	POPTR_0016s13630	POPTR_0016s13630 (11)//POPTR_0386s00200 (11)	scaffold_16:12790638-12790745(-) (11)//scaffold_386:16443-16550(+) (11)	NA	Q9I9R3	Solute carrier family 40 member 1	AT5G03570.2	iron regulated 2 	LOC_Os06g36450.1	"ferroportin1 domain containing protein, expressed"	NA	NA	GO:0006826|iron ion transport	GO:0005381|iron ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.213693.1.S1_at	A	A2MS	POPTR_0016s13630	POPTR_0016s13630 (11)//POPTR_0386s00200 (11)	scaffold_16:12786755-12791804(-) (11)//scaffold_386:15384-15569(+) (11)	NA	Q9I9R3	Solute carrier family 40 member 1	AT5G03570.2	iron regulated 2 	LOC_Os06g36450.1	"ferroportin1 domain containing protein, expressed"	NA	NA	GO:0006826|iron ion transport	GO:0005381|iron ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.213694.1.S1_at	A	A1TS	POPTR_0016s13660	POPTR_0016s13660 (11)	scaffold_16:12816640-12817180(-) (11)	NA	Q9SR82	Putative pentatricopeptide repeat-containing protein At3g08820	AT3G08820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g01850.1	"pentatricopeptide, putative, expressed"	Medtr2g110280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213695.1.S1_at	A	A1TS	POPTR_0016s13680	POPTR_0016s13680 (11)	scaffold_16:12857198-12857707(+) (11)	NA	P50160	Sex determination protein tasselseed-2	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g18740.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.213696.1.S1_at	A	A1TS	POPTR_0016s13690	POPTR_0016s13690 (11)	scaffold_16:12866152-12866674(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g17960.2	expressed protein	Medtr4g080950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213697.1.S1_at	A	A1TS	POPTR_0016s13710	POPTR_0016s13710 (11)	scaffold_16:12870008-12870503(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g077220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213698.1.S1_at	A	A1TS	POPTR_0016s13720	POPTR_0016s13720 (11)	scaffold_16:12878926-12879344(+) (11)	NA	P20144	Wound-induced protein 1	AT5G01740.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os05g27590.1	"wound-induced protein WI12, putative, expressed"	Medtr3g033850.1	Wound-induced WI12 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213699.1.S1_at	A	A1TS	POPTR_0016s13730	POPTR_0016s13730 (11)	scaffold_16:12885711-12886134(+) (11)	NA	P20144	Wound-induced protein 1	AT5G01740.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os05g27590.1	"wound-induced protein WI12, putative, expressed"	Medtr3g033850.1	Wound-induced WI12 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2137.1.A1_at	A	A1TS	POPTR_0013s02860	POPTR_0013s02860 (11)	scaffold_13:1733329-1733837(+) (11)	NA	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	AC235094_22.2	Ribosomal protein L13e AC235094.1 123915-120635 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.2137.2.A1_s_at	A	A1TS	POPTR_0003s10180	POPTR_0003s10180 (11)	scaffold_3:11273251-11273861(-) (11)	NA	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	AC235094_22.2	Ribosomal protein L13e AC235094.1 123915-120635 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.213700.1.S1_at	A	A1TS	POPTR_0016s13740	POPTR_0016s13740 (11)	scaffold_16:12888114-12888621(-) (11)	NA	NA	NA	AT3G10980.1	PLAC8 family protein 	LOC_Os05g39730.1	"SAG20, putative, expressed"	Medtr5g091160.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213701.1.S1_at	A	A1TS	POPTR_0016s13750	POPTR_0016s13750 (11)	scaffold_16:12892553-12893006(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.213702.1.S1_at	A	A1TS	POPTR_0016s13770	POPTR_0016s13770 (11)	scaffold_16:12901477-12903027(+) (11)	NA	P37287	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A	AT3G45100.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g16960.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC235487_3.1	"Glycosyl transferase, group 1; Haem peroxidase, plant/fungal/bacterial AC235487.1 8195-11450 E EGN_Mt090430 200"	GO:0006506|GPI anchor biosynthetic process	NA	NA
PtpAffx.213703.1.S1_s_at	A	A4TS	POPTR_0013s11790	POPTR_0778s00210 (11)//POPTR_0016s13800 (11)//POPTR_0013s11790 (11)//POPTR_0778s00200 (10)	scaffold_13:12441667-12441999(-) (11)//scaffold_16:12952138-12952494(+) (11)//scaffold_778:1874-8372(-) (11)//scaffold_778:8040-8361(-) (10)	NA	Q2V2S1	Putative defensin-like protein 20	AT5G52605.1	Defensin-like (DEFL) family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213705.1.S1_at	A	A1TS	POPTR_0016s13950	POPTR_0016s13950 (11)	scaffold_16:13171851-13174550(-) (11)	NA	Q8K4Q0	Regulatory-associated protein of mTOR	AT3G08850.1	"HEAT repeat ;WD domain, G-beta repeat protein protein "	LOC_Os12g01922.1	"WD domain and HEAT domain containing protein, putative, expressed"	Medtr7g077750.1	WD40-like; Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213706.1.S1_at	A	A1TS	POPTR_0016s13980	POPTR_0016s13980 (11)	scaffold_16:13214379-13215660(-) (11)	NA	P0CAT7	Alpha-ketoglutarate-dependent dioxygenase AlkB homolog	AT3G14160.1	2-oxoglutarate-dependent dioxygenase family protein 	LOC_Os03g60190.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr4g031500.1	"Alpha-ketoglutarate-dependent dioxygenase alkB, related "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.213707.1.S1_at	A	A1TS	POPTR_0016s14000	POPTR_0016s14000 (10)	scaffold_16:13219324-13219862(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213708.1.S1_at	A	A1TS	POPTR_0016s14010	POPTR_0016s14010 (11)	scaffold_16:13223280-13223849(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT3G51710.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os01g61020.1	"curculin-like lectin family protein, putative"	Medtr7g077850.1	Curculin-like (mannose-binding) lectin; N/apple PAN 	NA	GO:0005529|sugar binding	NA
PtpAffx.213709.1.S1_at	A	A1TS	POPTR_0016s14040	POPTR_0016s14040 (11)	scaffold_16:13289364-13289626(+) (11)	NA	P22195	Cationic peroxidase 1	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os04g55740.1	"peroxidase precursor, putative, expressed"	Medtr5g082780.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.213710.1.S1_at	A	A1TS	POPTR_0016s14050	POPTR_0016s14050 (11)	scaffold_16:13300845-13301459(+) (11)	NA	P22195	Cationic peroxidase 1	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os07g48030.1	"peroxidase precursor, putative, expressed"	Medtr5g082780.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.213711.1.S1_at	A	A1MS	POPTR_0016s14060	POPTR_0016s14060 (9)	scaffold_16:13306185-13307394(+) (10)	NA	P46643	"Aspartate aminotransferase, mitochondrial"	AT2G30970.2	aspartate aminotransferase 1 	LOC_Os06g35540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.213712.1.S1_at	A	A1TS	POPTR_0016s14070	POPTR_0016s14070 (11)	scaffold_16:13309293-13309872(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g07240.1	expressed protein	Medtr5g091410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213713.1.S1_at	A	A1TS	POPTR_0016s14120	POPTR_0016s14120 (11)	scaffold_16:13343625-13344760(-) (11)	NA	NA	NA	AT3G51650.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51640.1); Has 27645 Blast hits to 15097 proteins in 1246 species: Archae - 44; Bacteria - 3367; Metazoa - 10036; Fungi - 2690; Plants - 1205; Viruses - 196; Other Eukaryotes - 10107 (source: NCBI BLink). 	LOC_Os12g02130.1	expressed protein	Medtr7g077900.1	"Zinc finger, Sec23/Sec24-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213714.1.S1_at	A	A1TS	POPTR_0016s14120	POPTR_0016s14120 (11)	scaffold_16:13346446-13347543(-) (11)	NA	NA	NA	AT3G51650.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51640.1); Has 27645 Blast hits to 15097 proteins in 1246 species: Archae - 44; Bacteria - 3367; Metazoa - 10036; Fungi - 2690; Plants - 1205; Viruses - 196; Other Eukaryotes - 10107 (source: NCBI BLink). 	LOC_Os12g02130.1	expressed protein	Medtr7g077900.1	"Zinc finger, Sec23/Sec24-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213715.1.S1_at	A	A1TS	POPTR_0016s14130	POPTR_0016s14130 (11)	scaffold_16:13360793-13361260(+) (11)	NA	Q9SRK7	Adenine/guanine permease AZG1	AT3G10960.1	AZA-guanine resistant1 	LOC_Os05g26840.1	"permease domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213716.1.S1_at	A	A1TS	POPTR_0016s14150	POPTR_0016s14150 (11)	scaffold_16:13395604-13396175(+) (11)	NA	Q9LZW3	U-box domain-containing protein 16	AT5G01830.1	ARM repeat superfamily protein 	LOC_Os05g39930.1	"spotted leaf 11, putative, expressed"	Medtr2g021720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.213717.1.S1_at	A	A1TS	POPTR_0016s14180	POPTR_0016s14180 (11)	scaffold_16:13418205-13418423(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213718.1.S1_at	A	A1TS	POPTR_0016s14190	POPTR_0016s14190 (11)	scaffold_16:13419273-13419995(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213719.1.S1_at	A	A1TS	POPTR_0016s14210	POPTR_0016s14210 (9)	scaffold_16:13442328-13442764(-) (9)	NA	Q9SCU5	Probable serine/threonine-protein kinase WNK5	AT3G51630.2	with no lysine (K) kinase 5 	LOC_Os11g02305.1	expressed protein	Medtr5g083060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213721.1.S1_at	A	A1TS	POPTR_0016s14230	POPTR_0016s14230 (11)	scaffold_16:13475588-13475957(+) (11)	NA	Q3V050	Multidrug and toxin extrusion protein 2	AT2G38510.1	MATE efflux family protein 	LOC_Os02g45380.1	"MATE domain containing protein, expressed"	Medtr4g036740.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.213722.1.S1_at	A	A1TS	POPTR_0016s14260	POPTR_0016s14260 (11)	scaffold_16:13504464-13505207(-) (11)	NA	O22874	Expansin-A8	AT2G40610.1	expansin A8 	LOC_Os01g60770.1	"expansin precursor, putative, expressed"	Medtr5g083140.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213725.1.S1_at	A	A2TS	POPTR_0007s12740	POPTR_0610s00200 (10)//POPTR_0007s12740 (10)	scaffold_610:792-940(-) (10)//scaffold_7:12988781-12988929(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213726.1.S1_at	A	A1MS	POPTR_0016s14340	POPTR_0016s14340 (11)	scaffold_16:13587105-13587296(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT3G08760.1	Protein kinase superfamily protein 	LOC_Os01g60700.1	"serine/threonine-protein kinase NAK, putative, expressed"	Medtr7g080340.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213727.1.S1_at	A	A1TS	POPTR_0016s14370	POPTR_0016s14370 (11)	scaffold_16:13607743-13607798(-) (11)	NA	Q3ECK2	"Pentatricopeptide repeat-containing protein At1g62680, mitochondrial"	AT1G62680.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g21780.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr7g080380.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213727.1.S1_s_at	A	A1TS	POPTR_0016s14370	POPTR_0016s14370 (11)	scaffold_16:13607811-13608313(-) (11)	NA	Q3ECK2	"Pentatricopeptide repeat-containing protein At1g62680, mitochondrial"	AT1G62680.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g21780.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr7g080380.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213728.1.S1_at	A	A1TS	POPTR_0016s14380	POPTR_0016s14380 (11)	scaffold_16:13611661-13611882(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g036560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213729.1.S1_at	A	A1MS	POPTR_0016s14390	POPTR_0016s14390 (10)	scaffold_16:13614131-13614788(+) (11)	NA	NA	NA	AT3G51580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). 	NA	NA	Medtr7g080400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213730.1.S1_at	A	A1TS	POPTR_0016s14410	POPTR_0016s14410 (11)	scaffold_16:13621297-13621431(-) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT5G01890.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g080410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213731.1.S1_s_at	A	A2TS	POPTR_0016s14450	POPTR_0016s14450 (11)//POPTR_1723s00200 (9)	scaffold_16:13643712-13653036(-) (11)//scaffold_1723:4054-4203(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213732.1.S1_at	A	A1TS	POPTR_0016s14470	POPTR_0016s14470 (11)	scaffold_16:13664382-13664426(-) (11)	NA	Q96K49	Transmembrane protein 87B	AT1G61670.1	Lung seven transmembrane receptor family protein 	LOC_Os03g21690.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr5g076540.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.213732.1.S1_x_at	A	A1TS	POPTR_0016s14470	POPTR_0016s14470 (11)	scaffold_16:13664382-13665332(-) (11)	NA	Q96K49	Transmembrane protein 87B	AT1G61670.1	Lung seven transmembrane receptor family protein 	LOC_Os03g21690.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr5g076540.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.213733.1.S1_at	A	A1TS	POPTR_0016s14500	POPTR_0016s14500 (11)	scaffold_16:13698096-13698586(-) (11)	NA	P98204	Phospholipid-transporting ATPase 1	AT5G04930.1	aminophospholipid ATPase 1 	LOC_Os03g21680.4	"phospholipid-transporting ATPase, putative, expressed"	Medtr3g008480.2	"ATPase, E1-E2 type "	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.213735.1.S1_at	A	A1TS	POPTR_0016s14515	POPTR_0016s14515 (11)	scaffold_16:13721819-13723231(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G71400.1	receptor like protein 12 	LOC_Os06g04840.2	"leucine rich repeat protein, putative, expressed"	Medtr5g021600.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.213736.1.S1_at	A	A1TS	POPTR_0016s14540	POPTR_0016s14540 (11)	scaffold_16:13739561-13740375(+) (11)	NA	Q9LZV4	"Serine/threonine-protein kinase STN8, chloroplastic"	AT5G01920.1	Protein kinase superfamily protein 	LOC_Os05g40180.1	"serine/threonine-protein kinase stt7, chloroplast precursor, putative, expressed"	Medtr8g005520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213737.1.S1_at	A	A1TS	POPTR_0016s14550	POPTR_0016s14550 (11)	scaffold_16:13742106-13742494(-) (11)	NA	Q9LZV3	"Mannan endo-1,4-beta-mannosidase 6"	AT5G01930.1	Glycosyl hydrolase superfamily protein 	LOC_Os05g25480.1	"OsMan06 - Endo-Beta-Mannanase, expressed"	Medtr8g005200.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213738.1.S1_at	A	A1TS	POPTR_0016s14590	POPTR_0016s14590 (11)	scaffold_16:13775266-13776073(+) (11)	NA	NA	NA	AT2G38580.1	Mitochondrial ATP synthase D chain-related protein 	LOC_Os03g21520.2	expressed protein	Medtr8g116190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213739.1.S1_at	A	A1TS	POPTR_0016s14680	POPTR_0016s14680 (11)	scaffold_16:13839392-13839582(+) (11)	NA	Q7X9V3	Acetyltransferase NSI	AT1G32070.3	nuclear shuttle interacting 	LOC_Os05g40260.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g080510.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.213740.1.S1_at	A	A2TS	POPTR_0016s14690	POPTR_0016s14690 (11)//POPTR_0344s00200 (11)	scaffold_16:13851516-13853136(+) (11)//scaffold_344:1924-3544(-) (11)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT1G06840.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr7g080530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213741.1.S1_at	A	A1TS	POPTR_0016s14700	POPTR_0016s14700 (11)	scaffold_16:13866270-13867885(+) (11)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT5G01950.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr3g083770.1	Protein kinase; Adipokinetic hormone 	NA	GO:0005515|protein binding	NA
PtpAffx.213742.1.S1_at	A	A1TS	POPTR_0016s14710	POPTR_0016s14710 (11)	scaffold_16:13874561-13874837(+) (11)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT5G01950.1	Leucine-rich repeat protein kinase family protein 	LOC_Os05g40270.7	expressed protein	Medtr7g080530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213744.1.S1_at	A	A1TS	POPTR_0016s14740	POPTR_0016s14740 (11)	scaffold_16:13899689-13900130(+) (11)	NA	Q9C9Z1	Putative zinc transporter At3g08650	AT3G08650.2	ZIP metal ion transporter family 	LOC_Os05g25194.2	"metal cation transporter, putative, expressed"	Medtr7g080580.1	Zinc/iron permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213745.1.S1_at	A	A1TS	POPTR_0016s14790	POPTR_0016s14790 (11)	scaffold_16:13923495-13923928(-) (11)	NA	NA	NA	AT3G08600.1	Protein of unknown function (DUF1191) 	LOC_Os12g02550.1	expressed protein	Medtr7g080660.1	Protein of unknown function DUF1191 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213746.1.S1_at	A	A1TS	POPTR_0016s14810	POPTR_0016s14810 (11)	scaffold_16:13940009-13941113(-) (11)	NA	NA	NA	AT5G01970.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). 	LOC_Os05g25070.1	expressed protein	Medtr7g080690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213747.1.S1_at	A	A1TS	POPTR_0016s14820	POPTR_0016s14820 (11)	scaffold_16:13944169-13944668(-) (11)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT5G55040.2	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr8g005100.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213748.1.S1_at	A	A1TS	POPTR_0016s14860	POPTR_0016s14860 (11)	scaffold_16:13974468-13975473(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g080750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213749.1.S1_at	A	A1TS	POPTR_0016s14910	POPTR_0016s14910 (11)	scaffold_16:13999906-14000252(+) (11)	NA	NA	NA	AT3G23590.1	REF4-related 1 	LOC_Os07g48350.1	"structural constituent of ribosome, putative, expressed"	Medtr7g080810.1	"REF4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213752.1.S1_at	A	A1TS	POPTR_0016s15070	POPTR_0016s15070 (11)	scaffold_16:14106773-14107752(-) (11)	NA	Q9ZVI7	Probable galacturonosyltransferase 7	AT2G38650.2	galacturonosyltransferase 7 	LOC_Os03g21250.1	"glycosyl transferase, family 8, putative, expressed"	Medtr7g081100.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.213753.1.S1_at	A	A1TS	POPTR_0016s15080	POPTR_0016s15080 (11)	scaffold_16:14118078-14118264(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21230.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213753.1.S1_s_at	A	A1TS	POPTR_0016s15080	POPTR_0016s15080 (11)	scaffold_16:14117797-14118055(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21230.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213754.1.S1_at	A	A1TS	POPTR_0016s15100	POPTR_0016s15100 (11)	scaffold_16:14132442-14134243(-) (11)	NA	Q84K11	Serine/threonine-protein phosphatase 5	AT1G33400.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g36250.1	"tetratricopeptide repeat, putative, expressed"	Medtr3g121930.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213757.1.S1_at	A	A1TS	POPTR_0017s04310	POPTR_0017s04310 (11)	scaffold_17:3337856-3339068(+) (11)	NA	Q93ZR6	O-acyltransferase WSD1	AT3G49190.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os01g48874.1	"wax synthase, putative, expressed"	Medtr7g009360.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213757.1.S1_s_at	A	A2TS	POPTR_0013s08300	POPTR_0017s04310 (11)//POPTR_0013s08300 (11)	scaffold_13:7369954-7370635(+) (11)//scaffold_17:3337699-3339042(+) (11)	NA	Q93ZR6	O-acyltransferase WSD1	AT3G49190.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os01g48874.1	"wax synthase, putative, expressed"	Medtr7g009360.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213758.1.S1_at	A	A1TS	POPTR_0017s04300	POPTR_0017s04300 (11)	scaffold_17:3325577-3327259(-) (11)	NA	Q93ZR6	O-acyltransferase WSD1	AT5G53390.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os01g48874.1	"wax synthase, putative, expressed"	Medtr7g009360.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213759.1.S1_at	A	A2TS	POPTR_0017s04270	POPTR_0660s00200 (9)//POPTR_0017s04270 (9)	scaffold_17:3298339-3298706(+) (9)//scaffold_660:2354-2721(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213760.1.S1_s_at	A	A1TS	POPTR_0017s04260	POPTR_0017s04260 (11)	scaffold_17:3282421-3282721(-) (11)	NA	Q8S0F0	Formin-like protein 1	AT3G25500.1	formin homology 1 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr4g128070.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213761.1.S1_s_at	A	A1TS	POPTR_0017s04250	POPTR_0017s04250 (11)	scaffold_17:3280192-3281391(+) (11)	NA	Q9R0X4	"Acyl-coenzyme A thioesterase 9, mitochondrial"	AT2G30720.1	Thioesterase/thiol ester dehydrase-isomerase superfamily protein 	LOC_Os09g34190.1	"acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed"	Medtr4g128060.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213763.1.S1_at	A	A1MS	POPTR_0017s04190	POPTR_0017s04190 (9)	scaffold_17:3216633-3217737(+) (9)	NA	Q9FID6	Probable receptor-like protein kinase At5g39020	AT4G18250.1	"receptor serine/threonine kinase, putative "	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr1g034870.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213765.1.S1_at	A	A1TS	POPTR_0247s00230	POPTR_0247s00230 (10)	scaffold_247:41189-41674(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02430.1	"TAK14, putative, expressed"	Medtr1g034760.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213766.1.S1_s_at	A	A2TS	POPTR_0017s04060	POPTR_0017s04060 (11)//POPTR_1315s00200 (9)	scaffold_1315:3106-3875(+) (9)//scaffold_17:3051852-3053082(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT2G31800.1	Integrin-linked protein kinase family 	LOC_Os01g66860.3	"serine/threonine protein kinase, putative, expressed"	Medtr4g137160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213767.1.S1_s_at	A	A2TS	POPTR_0017s03640	POPTR_0017s03640 (11)//POPTR_0017s04040 (11)	scaffold_17:2701983-2702488(+) (11)//scaffold_17:3038093-3038601(-) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213768.1.S1_s_at	A	A1TS	POPTR_0017s04000	POPTR_0017s04000 (11)	scaffold_17:3011838-3012943(+) (11)	NA	Q9Y5Q8	General transcription factor 3C polypeptide 5	AT3G49410.1	"Transcription factor IIIC, subunit 5 "	LOC_Os01g34430.1	expressed protein	Medtr7g065320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213769.1.S1_at	A	A1MS	POPTR_0017s03970	POPTR_0017s03970 (11)	scaffold_17:2997785-2998418(-) (11)	NA	O80560	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 12"	AT1G05630.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213770.1.S1_at	A	A1TS	POPTR_0017s03970	POPTR_0017s03970 (9)	scaffold_17:2996553-2997162(-) (11)	NA	O80560	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 12"	AT1G05630.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213771.1.S1_at	A	A1TS	POPTR_0017s06960	POPTR_0017s06960 (11)	scaffold_17:5419325-5419856(-) (11)	NA	Q84MA3	"Pentatricopeptide repeat-containing protein At4g32430, mitochondrial"	AT4G32430.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g47370.1	"pentatricopeptide, putative, expressed"	AC233070_28.1	Pentatricopeptide repeat AC233070.4 117139-119514 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213772.1.S1_at	A	A1TS	POPTR_0017s06970	POPTR_0017s06970 (10)	scaffold_17:5423996-5425155(-) (10)	NA	Q8GXL7	GATA transcription factor 24	AT3G21175.2	ZIM-like 1 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr4g121420.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.213773.1.S1_at	A	A1TS	POPTR_0017s06980	POPTR_0017s06980 (11)	scaffold_17:5435331-5435668(-) (11)	NA	Q9LRH6	GATA transcription factor 25	AT4G24470.3	GATA-type zinc finger protein with TIFY domain 	LOC_Os02g05510.3	"GATA transcription factor 25, putative, expressed"	Medtr4g121420.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.213774.1.S1_at	A	A1TS	POPTR_0017s07020	POPTR_0017s07020 (11)	scaffold_17:5466593-5467091(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213775.1.S1_at	A	A1TS	POPTR_0017s07030	POPTR_0017s07030 (11)	scaffold_17:5469288-5469731(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G49690.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr2g008380.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213776.1.S1_at	A	A1TS	POPTR_0017s07040	POPTR_0017s07040 (11)	scaffold_17:5472031-5472379(-) (11)	NA	P22418	"Fructose-1,6-bisphosphatase, chloroplastic"	AT5G64380.1	Inositol monophosphatase family protein 	LOC_Os06g45370.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr4g121210.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.213777.1.S1_at	A	A1TS	POPTR_0017s07050	POPTR_0017s07050 (10)	scaffold_17:5479425-5479949(+) (11)	NA	Q55Z49	Probable kinetochore protein NUF2	AT1G61000.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinetochore protein Nuf2 (InterPro:IPR005549); Has 50972 Blast hits to 29793 proteins in 2070 species: Archae - 902; Bacteria - 7404; Metazoa - 23628; Fungi - 4156; Plants - 2312; Viruses - 158; Other Eukaryotes - 12412 (source: NCBI BLink). 	LOC_Os03g38010.1	"nuf2 family protein, expressed"	Medtr4g064820.1	Nuf2 	GO:0007067|mitosis	NA	"GO:0000775|""chromosome, centromeric region"""
PtpAffx.213778.1.S1_at	A	A1TS	POPTR_0017s07080	POPTR_0017s07080 (9)	scaffold_17:5499143-5499511(-) (9)	NA	NA	NA	AT1G29510.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37350.1	"OsSAUR40 - Auxin-responsive SAUR gene family member, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213779.1.S1_at	A	A1TS	POPTR_0017s07110	POPTR_0017s07110 (11)	scaffold_17:5516372-5516749(+) (11)	NA	NA	NA	AT1G29500.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37440.1	OsSAUR49 - Auxin-responsive SAUR gene family member	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213780.1.S1_s_at	A	A2TS	POPTR_0017s07120	POPTR_0289s00220 (11)//POPTR_0017s07120 (11)	scaffold_17:5517503-5517919(+) (11)//scaffold_289:9704-10120(-) (11)	NA	NA	NA	AT1G29420.1	SAUR-like auxin-responsive protein family  	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213785.1.S1_s_at	A	A1MS	POPTR_0017s07190	POPTR_0017s07190 (10)	scaffold_17:5577743-5578751(-) (10)	NA	P60028	Rab GDP dissociation inhibitor alpha	AT5G09550.1	GDP dissociation inhibitor family protein / Rab GTPase activator family protein 	LOC_Os03g16900.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g121110.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213787.1.S1_s_at	A	A1TS	POPTR_0017s07210	POPTR_0017s07210 (10)	scaffold_17:5608348-5609287(-) (10)	NA	NA	NA	AT5G64360.4	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g31940.1	"dnaJ domain containing protein, expressed"	Medtr4g121050.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.213788.1.S1_s_at	A	A1TS	POPTR_0017s07240	POPTR_0017s07240 (9)	scaffold_17:5626106-5626416(+) (11)	NA	NA	NA	AT5G09530.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213789.1.S1_s_at	A	A1MS	POPTR_0017s07240	POPTR_0017s07240 (11)	scaffold_17:5626965-5627215(+) (11)	NA	NA	NA	AT5G09530.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213791.1.S1_at	A	A1TS	POPTR_0017s07290	POPTR_0017s07290 (11)	scaffold_17:5651394-5651439(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213791.1.S1_x_at	A	A1TS	POPTR_0017s07290	POPTR_0017s07290 (11)	scaffold_17:5651269-5651436(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213794.1.S1_at	A	A1TS	POPTR_0017s07390	POPTR_0017s07390 (11)	scaffold_17:5752922-5753217(-) (11)	NA	NA	NA	AT4G14000.1	Putative methyltransferase family protein 	LOC_Os09g19570.1	"AGAP009532-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213794.1.S1_s_at	A	A2TS	POPTR_0017s07390	POPTR_0017s07390 (11)//POPTR_0017s07420 (11)	scaffold_17:5654508-5654644(-) (10)//scaffold_17:5681877-5682033(-) (10)//scaffold_17:5737674-5737847(-) (11)//scaffold_17:5752723-5752896(-) (11)//scaffold_17:5770747-5770920(-) (11)//scaffold_17:7272295-7272468(+) (11)//scaffold_17:7292108-7292281(+) (9)//scaffold_225:16462-16635(-) (11)	NA	NA	NA	AT4G14000.1	Putative methyltransferase family protein 	LOC_Os09g19570.1	"AGAP009532-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213795.1.S1_at	A	A1TS	POPTR_0017s07330	POPTR_0017s07330 (11)	scaffold_17:5684289-5684539(-) (11)	NA	NA	NA	AT4G13990.1	Exostosin family protein 	NA	NA	Medtr3g104740.1	Exostosin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213797.1.S1_at	A	A1TS	POPTR_0017s07350	POPTR_0017s07350 (11)	scaffold_17:5703573-5703638(-) (11)	POPTR_0328s00200 (8)//POPTR_0001s05330 (8)	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os08g39850.1	"lipoxygenase, chloroplast precursor, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.213798.1.S1_at	A	A2TS	POPTR_0017s07360	POPTR_0017s10850 (11)//POPTR_0017s07360 (11)	scaffold_17:5726273-5726664(+) (11)//scaffold_17:10391081-10391472(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT2G36670.2	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.2	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr7g124500.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213800.1.S1_at	A	A1TS	POPTR_0017s07460	POPTR_0017s07460 (11)	scaffold_17:5801241-5801905(+) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os12g21850.1	"OsMADS73 - MADS-box family gene with M-alpha type-box, expressed"	Medtr8g047650.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.213801.1.S1_at	A	A1TS	POPTR_0017s07480	POPTR_0017s07480 (10)	scaffold_17:5806646-5807199(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213803.1.S1_at	A	A1TS	POPTR_0017s07500	POPTR_0017s07500 (11)	scaffold_17:5834346-5834812(-) (11)	NA	NA	NA	AT1G58120.1	BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g42834.1	"retrotransposon protein, putative, unclassified"	Medtr4g120990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213805.1.S1_at	A	A1TS	POPTR_0017s07550	POPTR_0017s07550 (11)	scaffold_17:5876862-5877036(-) (11)	NA	Q14FC5	DNA-directed RNA polymerase subunit alpha	ATCG00740.1	RNA polymerase subunit alpha 	LOC_Os06g39700.1	"DNA-directed RNA polymerase subunit alpha, putative"	Medtr4g042510.1	"RNA polymerase, RBP11-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213806.1.S1_at	A	A1TS	POPTR_0017s07560	POPTR_0017s07560 (10)	scaffold_17:5888248-5889188(-) (10)	NA	NA	NA	AT4G33600.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33590.1); Has 131 Blast hits to 131 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 12; Fungi - 24; Plants - 58; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). "	LOC_Os09g29160.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213807.1.S1_at	A	A1TS	POPTR_0017s07580	POPTR_0017s07580 (11)	scaffold_17:5898868-5899282(-) (11)	NA	Q94B59	"Pentatricopeptide repeat-containing protein At5g09450, mitochondrial"	AT5G09450.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g37720.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213808.1.S1_at	A	A1TS	POPTR_0017s07610	POPTR_0017s07610 (10)	scaffold_17:5917547-5918204(-) (10)	NA	Q9FZ95	Purine permease 3	AT1G28220.1	purine permease 3 	LOC_Os09g29239.1	"purine permease, putative, expressed"	Medtr3g150070.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213810.1.S1_at	A	A1TS	POPTR_0017s07660	POPTR_0017s07660 (11)	scaffold_17:5951839-5952040(+) (11)	NA	NA	NA	AT1G24420.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g10420.1	"transferase family domain containing protein, expressed"	Medtr3g103100.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213811.1.S1_at	A	A1TS	POPTR_0017s07660	POPTR_0017s07660 (9)	scaffold_17:5952253-5952525(+) (9)	NA	NA	NA	AT1G24420.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g10420.1	"transferase family domain containing protein, expressed"	Medtr3g103100.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213812.1.S1_at	A	A1TS	POPTR_0017s07680	POPTR_0017s07680 (11)	scaffold_17:5961405-5961974(-) (11)	NA	P0CE10	"Putative uncharacterized protein At4g01020, chloroplastic"	AT5G10370.1	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related 	LOC_Os07g42900.1	"helicase domain-containing protein, putative, expressed"	Medtr3g102250.1	"von Willebrand factor, type C; Helicase, C-terminal; Zinc finger, RING-type; Zinc finger, C6HC-type; Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.213814.1.S1_at	A	A1TS	POPTR_0017s07710	POPTR_0017s07710 (11)	scaffold_17:5990414-5991428(-) (11)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os08g37605.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr4g120840.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
PtpAffx.213815.1.S1_at	A	A1TS	POPTR_0017s07740	POPTR_0017s07740 (11)	scaffold_17:6019028-6020503(+) (11)	NA	Q8LPB4	Phytosulfokine receptor 1	AT2G02220.1	phytosulfokin receptor 1 	LOC_Os04g57630.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr4g137750.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.213816.1.S1_at	A	A1TS	POPTR_0017s07750	POPTR_0017s07750 (11)	scaffold_17:6027703-6028288(+) (11)	NA	Q9ZVR7	Phytosulfokine receptor 1	AT2G02220.1	phytosulfokin receptor 1 	LOC_Os02g41890.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr7g080410.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.213817.1.S1_at	A	A1TS	POPTR_0017s07790	POPTR_0017s07790 (11)	scaffold_17:6054860-6055399(+) (11)	NA	Q8RXN0	ABC transporter G family member 11	AT1G17840.1	white-brown complex homolog protein 11 	LOC_Os09g29660.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g120680.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.213818.1.S1_at	A	A1TS	POPTR_0017s07830	POPTR_0017s07830 (11)	scaffold_17:6127833-6128162(-) (11)	NA	NA	NA	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213819.1.S1_at	A	A1TS	POPTR_0017s07840	POPTR_0017s07840 (11)	scaffold_17:6133210-6136213(-) (11)	NA	P38025	"Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic"	AT3G21110.2	purin 7 	LOC_Os09g29190.1	"phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed"	Medtr5g074460.1	SAICAR synthetase 	GO:0044281|small molecule metabolic process||GO:0006164|purine nucleotide biosynthetic process	GO:0004639|phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	NA
PtpAffx.213820.1.S1_at	A	A1TS	POPTR_0017s07875	POPTR_0017s07875 (11)	scaffold_17:6191227-6191484(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G78270.1	UDP-glucosyl transferase 85A4 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213820.1.S1_s_at	A	A3TS	POPTR_0017s07875	POPTR_0017s07875 (11)//POPTR_0017s07930 (11)//POPTR_0017s07910 (10)	scaffold_17:6191252-6191445(+) (11)//scaffold_17:6270182-6270375(+) (11)//scaffold_17:6302244-6302437(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G78270.1	UDP-glucosyl transferase 85A4 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213822.1.S1_at	A	A1TS	POPTR_0017s07970	POPTR_0017s07970 (10)	scaffold_17:6363614-6364185(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213822.1.S1_s_at	A	A1TS	POPTR_0017s07970	POPTR_0017s07970 (11)	scaffold_17:6363319-6363615(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213823.1.S1_at	A	A1TS	POPTR_0017s07980	POPTR_0017s07980 (11)	scaffold_17:6391419-6392291(+) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr4g120610.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.213825.1.S1_at	A	A1TS	POPTR_0017s07990	POPTR_0017s07990 (11)	scaffold_17:6399069-6399242(+) (11)	NA	NA	NA	AT3G06500.1	Plant neutral invertase family protein 	LOC_Os01g22900.3	"neutral/alkaline invertase, putative, expressed"	Medtr1g102720.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213826.1.S1_at	A	A1TS	POPTR_0017s08000	POPTR_0017s08000 (11)	scaffold_17:6413882-6414989(+) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27170.1	"ICE-like protease p20 domain containing protein, putative, expressed"	Medtr4g120610.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.213827.1.S1_at	A	A1TS	POPTR_0017s08010	POPTR_0017s08010 (9)	scaffold_17:6422275-6423032(+) (9)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr4g120610.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.213828.1.S1_at	A	A1TS	POPTR_0017s08020	POPTR_0017s08020 (11)	scaffold_17:6440352-6441231(+) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr2g009030.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.213829.1.S1_at	A	A1MS	POPTR_0017s08040	POPTR_0017s08040 (10)	scaffold_17:6446934-6447876(-) (10)	NA	NA	NA	AT5G09430.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g42994.1	"hydrolase, putative, expressed"	Medtr3g101880.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213830.1.S1_at	A	A1TS	POPTR_0017s08050	POPTR_0017s08050 (11)	scaffold_17:6457050-6457482(+) (11)	NA	Q3EC97	F-box/LRR-repeat protein 14	AT1G80570.1	RNI-like superfamily protein 	LOC_Os04g30210.1	"OsFBL15 - F-box domain and LRR containing protein, expressed"	Medtr2g026110.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213831.1.S1_at	A	A1TS	POPTR_0017s08090	POPTR_0017s08090 (11)	scaffold_17:6489360-6489917(+) (11)	NA	Q9M8M5	Ethylene-responsive transcription factor ERF084	AT1G80580.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32790.1	"AP2 domain containing protein, expressed"	Medtr4g006420.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.213832.1.S1_at	A	A1TS	POPTR_0017s08100	POPTR_0017s08100 (11)	scaffold_17:6502264-6503563(-) (11)	NA	Q84WJ2	Probable DNA primase large subunit	AT1G67320.2	"DNA primase, large subunit family "	LOC_Os07g22400.2	"POLA3 - Putative DNA polymerase alpha complex subunit, expressed"	Medtr4g147290.1	"Eukaryotic-type DNA primase, large subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213833.1.S1_at	A	A1TS	POPTR_0017s08150	POPTR_0017s08150 (11)	scaffold_17:6598898-6598937(+) (11)	NA	Q99460	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213834.1.S1_at	A	A1TS	POPTR_0017s08160	POPTR_0017s08160 (11)	scaffold_17:6604191-6604745(+) (11)	NA	Q56YJ8	Transcription factor FAMA	AT3G24140.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g50900.1	"helix-loop-helix DNA-binding protein, putative"	Medtr3g150170.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.213835.1.S1_at	A	A1TS	POPTR_0017s08180	POPTR_0017s08180 (11)	scaffold_17:6634069-6634901(+) (11)	NA	Q4PSN0	Probable pectinesterase 29	AT3G24130.1	Pectin lyase-like superfamily protein 	LOC_Os01g19440.1	"pectinesterase, putative"	Medtr6g036510.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.213836.1.S1_at	A	A1TS	POPTR_0017s08200	POPTR_0017s08200 (11)	scaffold_17:6657714-6658525(+) (11)	NA	Q9LRN6	Probable calcium-binding protein CML22	AT3G24110.1	Calcium-binding EF-hand family protein 	LOC_Os06g40720.1	"EF hand family protein, putative, expressed"	Medtr8g083980.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213837.1.S1_at	A	A1TS	POPTR_0017s08220	POPTR_0017s08220 (10)	scaffold_17:6676147-6676666(+) (10)	NA	NA	NA	AT4G13630.2	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213838.1.S1_at	A	A1TS	POPTR_0017s08220	POPTR_0017s08220 (9)	scaffold_17:6679038-6679632(+) (11)	NA	NA	NA	AT4G13630.2	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213840.1.S1_at	A	A1TS	POPTR_0017s08240	POPTR_0017s08240 (11)	scaffold_17:6693447-6693967(+) (11)	NA	P62840	Ubiquitin-conjugating enzyme E2 D2	AT5G56150.2	ubiquitin-conjugating enzyme 30 	LOC_Os04g57220.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.213841.1.S1_at	A	A1TS	POPTR_0017s08250	POPTR_0017s08250 (11)	scaffold_17:6723255-6723294(-) (11)	NA	Q9SVQ0	Ethylene-responsive transcription factor ERF062	AT4G13620.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr1g111860.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.213842.1.S1_at	A	A1TS	POPTR_0017s08270	POPTR_0017s08270 (11)	scaffold_17:6745591-6746974(+) (11)	NA	Q8W4N3	Ubiquitin carboxyl-terminal hydrolase 2	AT1G04860.1	ubiquitin-specific protease 2 	LOC_Os09g32740.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr3g105630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.213843.1.S1_at	A	A1TS	POPTR_0017s08300	POPTR_0017s08300 (11)	scaffold_17:6757648-6759671(-) (11)	NA	Q9SFU3	Purple acid phosphatase 15	AT3G07130.1	purple acid phosphatase 15 	LOC_Os03g63074.2	"Ser/Thr protein phosphatase family protein, expressed"	Medtr3g105420.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.213844.1.S1_at	A	A1TS	POPTR_0017s08310	POPTR_0017s08310 (11)	scaffold_17:6767761-6769058(-) (11)	NA	Q9SFU3	Purple acid phosphatase 15	AT3G07130.1	purple acid phosphatase 15 	LOC_Os03g63074.2	"Ser/Thr protein phosphatase family protein, expressed"	Medtr3g105420.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.213845.1.S1_at	A	A1TS	POPTR_0011s10550	POPTR_0011s10550 (11)	scaffold_11:13041742-13042280(+) (11)	NA	Q9SRH9	Paired amphipathic helix protein Sin3-like 1	AT1G59890.3	SIN3-like 5 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr6g009610.1	"Paired amphipathic helix protein Sin3, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.213847.1.S1_at	A	A2TS	POPTR_0011s10580	POPTR_0017s08330 (11)//POPTR_0011s10580 (11)	scaffold_11:13068358-13068895(+) (11)//scaffold_17:6824204-6824741(+) (11)	NA	Q9SRR1	F-box/LRR-repeat protein 12	AT3G07550.2	RNI-like superfamily protein 	LOC_Os11g16280.1	"F-box domain containing protein, expressed"	Medtr7g138390.2	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.213849.1.S1_at	A	A1TS	POPTR_0017s08340	POPTR_0017s08340 (10)	scaffold_17:6858200-6858653(+) (10)	NA	Q9LFQ3	Paired amphipathic helix protein Sin3-like 2	AT5G15020.2	SIN3-like 2 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr6g009610.1	"Paired amphipathic helix protein Sin3, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.213850.1.S1_at	A	A1TS	POPTR_0017s08350	POPTR_0017s08350 (11)	scaffold_17:6862492-6865568(+) (11)	NA	Q86AS0	Probable helicase DDB_G0274399	AT4G15570.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr5g069050.1	"DEAD-like helicase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213851.1.S1_at	A	A1TS	POPTR_0017s08360	POPTR_0017s08360 (11)	scaffold_17:6875387-6876528(+) (11)	NA	Q86AS0	Probable helicase DDB_G0274399	AT4G15570.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr5g069050.1	"DEAD-like helicase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213853.1.S1_at	A	A1TS	POPTR_0017s10450	POPTR_0017s10450 (11)	scaffold_17:9797384-9799428(-) (11)	NA	C1A3Z5	50S ribosomal protein L13	AT3G01790.2	Ribosomal protein L13 family protein 	LOC_Os08g06474.1	"ribosomal protein L13, putative"	Medtr3g106560.1	Ribosomal protein L13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.213854.1.S1_s_at	A	A1TS	POPTR_0017s10460	POPTR_0017s10460 (11)	scaffold_17:9855129-9855316(+) (11)	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT1G71691.2	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g61200.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g105080.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.213855.1.S1_at	A	A1TS	POPTR_0017s10460	POPTR_0017s10460 (11)	scaffold_17:9856166-9856823(+) (11)	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT1G71691.2	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g61200.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g105080.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.213856.1.S1_at	A	A1TS	POPTR_0017s10550	POPTR_0017s10550 (11)	scaffold_17:9994223-9994649(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213857.1.S1_at	A	A1TS	POPTR_0017s10570	POPTR_0017s10570 (11)	scaffold_17:10005990-10006703(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213860.1.S1_at	A	A1TS	POPTR_0017s10610	POPTR_0017s10610 (11)	scaffold_17:10068980-10069208(-) (11)	NA	NA	NA	AT5G40460.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g005180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213861.1.S1_at	A	A1TS	POPTR_0017s10620	POPTR_0017s10620 (11)	scaffold_17:10102982-10105403(-) (11)	NA	Q9LU89	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g62730.3	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.213862.1.S1_at	A	A1TS	POPTR_0017s10660	POPTR_0017s10660 (11)	scaffold_17:10128204-10133270(-) (11)	NA	P57758	Cystinosin homolog	AT5G40670.1	PQ-loop repeat family protein / transmembrane family protein 	LOC_Os12g18110.2	"PQ loop repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213863.1.S1_at	A	A1TS	POPTR_0017s10670	POPTR_0017s10670 (11)	scaffold_17:10134483-10135750(-) (11)	NA	Q9ATY5	DNA repair protein UVH3	AT3G28030.1	5'-3' exonuclease family protein 	LOC_Os03g10780.1	"flap endonuclease, putative, expressed"	Medtr6g059430.1	"Chromo; Helix-hairpin-helix motif, class 2 "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0004518|nuclease activity	NA
PtpAffx.213864.1.S1_at	A	A1TS	POPTR_0017s10680	POPTR_0017s10680 (11)	scaffold_17:10167033-10168360(+) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os05g38230.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.213865.1.S1_at	A	A1TS	POPTR_0017s10690	POPTR_0017s10690 (11)	scaffold_17:10172308-10173794(+) (11)	NA	Q969N2	GPI transamidase component PIG-T	AT3G07140.1	GPI transamidase component Gpi16 subunit family protein 	LOC_Os11g28980.1	"GPI transamidase component Gpi16 subunit family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213866.1.S1_at	A	A1TS	POPTR_0017s10700	POPTR_0017s10700 (11)	scaffold_17:10179579-10180172(-) (11)	NA	Q9SNB7	Pentatricopeptide repeat-containing protein At3g46610	AT3G46610.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os12g18640.1	"pentatricopeptide, putative, expressed"	Medtr5g102690.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213868.1.S1_at	A	A1TS	POPTR_0017s10740	POPTR_0017s10740 (11)	scaffold_17:10255440-10256580(+) (11)	NA	Q9LTY6	Uridine kinase-like protein 5	AT3G27440.1	uridine kinase-like 5 	LOC_Os11g16370.1	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr5g104300.1	Phosphoribulokinase/uridine kinase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213869.1.S1_at	A	A1TS	POPTR_0017s10760	POPTR_0017s10760 (11)	scaffold_17:10285179-10287325(-) (11)	NA	Q9LYJ9	DEAD-box ATP-dependent RNA helicase 46	AT5G14610.2	DEAD box RNA helicase family protein 	LOC_Os01g07740.3	"DEAD-box ATP-dependent RNA helicase 14, putative, expressed"	Medtr6g005450.1	"WW/Rsp5/WWP; Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213870.1.S1_at	A	A1TS	POPTR_0017s10780	POPTR_0017s10780 (11)	scaffold_17:10301699-10305044(+) (11)	NA	P81391	Myb-related protein 305	AT3G27810.1	myb domain protein 21 	LOC_Os03g20090.1	"MYB family transcription factor, putative, expressed"	Medtr1g140720.1	Phosphoglycerate/bisphosphoglycerate mutase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213871.1.S1_at	A	A1TS	POPTR_0017s10790	POPTR_0017s10790 (11)	scaffold_17:10325832-10326381(-) (11)	NA	Q9FND8	Pentatricopeptide repeat-containing protein At5g40400	AT5G40400.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g36610.1	conserved hypothetical protein	Medtr6g005010.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213873.1.S1_at	A	A1TS	POPTR_0017s10830	POPTR_0017s10830 (11)	scaffold_17:10369132-10369739(-) (11)	NA	Q9LVX1	Zinc finger CCCH domain-containing protein 41	AT3G27700.2	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os04g32340.1	"RNA-binding motif protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.213874.1.S1_s_at	A	A1TS	POPTR_0017s10860	POPTR_0017s10860 (11)	scaffold_17:10397396-10397797(-) (11)	NA	Q9FL07	RING-H2 finger protein ATL46	AT5G40250.1	RING/U-box superfamily protein 	LOC_Os02g50930.1	"RING-H2 finger protein, putative, expressed"	Medtr5g035920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213876.1.S1_at	A	A1TS	POPTR_0017s10890	POPTR_0017s10890 (11)	scaffold_17:10456368-10456857(-) (11)	NA	Q9VMJ7	Lysine-specific demethylase lid	AT3G01460.1	methyl-CPG-binding domain 9 	LOC_Os02g09920.1	"PHD-finger domain containing protein, putative, expressed"	AC233671_6.1	Bromodomain AC233671.1 18499-21056 H EGN_Mt090430 200	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213877.1.S1_at	A	A1TS	POPTR_0017s10890	POPTR_0017s10890 (11)	scaffold_17:10458674-10458984(-) (11)	NA	Q9VMJ7	Lysine-specific demethylase lid	AT3G01460.1	methyl-CPG-binding domain 9 	LOC_Os02g09920.1	"PHD-finger domain containing protein, putative, expressed"	AC233671_6.1	Bromodomain AC233671.1 18499-21056 H EGN_Mt090430 200	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213878.1.S1_at	A	A1TS	POPTR_0017s10890	POPTR_0017s10890 (11)	scaffold_17:10463694-10463902(-) (11)	NA	Q9VMJ7	Lysine-specific demethylase lid	AT3G01460.1	methyl-CPG-binding domain 9 	LOC_Os02g09920.1	"PHD-finger domain containing protein, putative, expressed"	AC233671_6.1	Bromodomain AC233671.1 18499-21056 H EGN_Mt090430 200	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213879.1.S1_at	A	A1TS	POPTR_0017s10890	POPTR_0017s10890 (11)	scaffold_17:10468842-10469207(-) (11)	NA	Q9VMJ7	Lysine-specific demethylase lid	AT3G01460.1	methyl-CPG-binding domain 9 	LOC_Os02g09920.1	"PHD-finger domain containing protein, putative, expressed"	AC233671_6.1	Bromodomain AC233671.1 18499-21056 H EGN_Mt090430 200	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213880.1.S1_at	A	A1TS	POPTR_0017s10930	POPTR_0017s10930 (10)	scaffold_17:10517552-10517585(-) (10)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G01490.1	Protein kinase superfamily protein 	LOC_Os05g50190.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213880.1.S1_s_at	A	A1TS	POPTR_0017s10930	POPTR_0017s10930 (11)	scaffold_17:10517628-10519002(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G01490.1	Protein kinase superfamily protein 	LOC_Os05g50190.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213881.1.S1_at	A	A1TS	POPTR_0017s10980	POPTR_0017s10980 (11)	scaffold_17:10567429-10568327(-) (11)	NA	Q9GZR2	RNA exonuclease 4	AT3G27970.1	Exonuclease family protein 	LOC_Os02g47920.1	ZOS2-16 - C2H2 zinc finger protein	Medtr2g121500.1	"Zinc finger, C2H2-type; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213882.1.S1_at	A	A1TS	POPTR_0017s10990	POPTR_0017s10990 (11)	scaffold_17:10627727-10628289(+) (11)	NA	Q9FL17	U-box domain-containing protein 40	AT5G40140.1	RING/U-box superfamily protein with ARM repeat domain 	LOC_Os06g13080.1	"spotted leaf 11, putative, expressed"	Medtr6g008870.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.213884.1.S1_at	A	A1TS	POPTR_0017s11000	POPTR_0017s11000 (11)	scaffold_17:10651209-10651768(-) (11)	NA	NA	NA	AT3G28150.1	TRICHOME BIREFRINGENCE-LIKE 22 	LOC_Os04g39130.1	conserved hypothetical protein	Medtr5g036410.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213885.1.S1_at	A	A1TS	POPTR_0017s11020	POPTR_0017s11020 (11)	scaffold_17:10678242-10678749(+) (11)	NA	P27046	Alpha-mannosidase 2	AT5G14950.1	golgi alpha-mannosidase II 	LOC_Os06g13650.2	"alpha-mannosidase 2, putative, expressed"	Medtr6g009490.1	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0044262|cellular carbohydrate metabolic process||GO:0006013|mannose metabolic process||GO:0044281|small molecule metabolic process	GO:0008270|zinc ion binding||GO:0004559|alpha-mannosidase activity	NA
PtpAffx.213886.1.S1_at	A	A1TS	POPTR_0017s11060	POPTR_0017s11060 (11)	scaffold_17:10721046-10722145(-) (11)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT2G37440.1	DNAse I-like superfamily protein 	LOC_Os07g07950.2	"type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed"	Medtr6g009930.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213887.1.S1_at	A	A1TS	POPTR_0017s11070	POPTR_0017s11070 (10)	scaffold_17:10732393-10732935(+) (10)	POPTR_2047s00200 (6)	NA	NA	AT1G74860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits to 193 proteins in 61 species: Archae - 0; Bacteria - 9; Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other Eukaryotes - 49 (source: NCBI BLink). 	LOC_Os02g37020.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213888.1.S1_at	A	A1TS	POPTR_0017s11080	POPTR_0017s11080 (11)	scaffold_17:10738068-10738582(+) (11)	NA	O04567	Probable inactive receptor kinase At1g27190	AT3G28450.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g41030.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr6g010010.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.213892.1.S1_at	A	A1TS	POPTR_0017s11170	POPTR_0017s11170 (11)	scaffold_17:10830578-10831551(-) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT3G28480.1	Oxoglutarate/iron-dependent oxygenase 	LOC_Os03g58890.2	"oxidoreductase, putative, expressed"	Medtr6g010100.1	Metridin-like ShK toxin; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.213894.1.S1_at	A	A1TS	POPTR_0017s11180	POPTR_0017s11180 (11)	scaffold_17:10841749-10842263(-) (11)	NA	A2YBX5	Protein kinase G11A	AT5G40030.1	Protein kinase superfamily protein 	LOC_Os09g08420.1	"AGC_PVPK_like_kin82y.15 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213897.1.S1_at	A	A1TS	POPTR_0017s11210	POPTR_0017s11210 (11)	scaffold_17:10926082-10926669(-) (11)	NA	Q9FLD8	"Pentatricopeptide repeat-containing protein At5g39980, chloroplastic"	AT5G39980.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g61630.1	expressed protein	Medtr3g105550.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213898.1.S1_at	A	A1TS	POPTR_0017s11220	POPTR_0017s11220 (11)	scaffold_17:10929157-10930039(-) (11)	NA	Q9SSG3	HIPL1 protein	AT5G39970.1	catalytics 	LOC_Os03g48540.1	expressed protein	AC233677_10.1	"Soluble quinoprotein glucose dehydrogenase; TolB, C-terminal AC233677.2 54718-59391 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213899.1.S1_s_at	A	A1MS	POPTR_0017s11230	POPTR_0017s11230 (10)	scaffold_17:10938575-10939081(+) (10)	NA	NA	NA	AT3G28630.1	Protein of unknown function (DUF569) 	LOC_Os03g58740.1	expressed protein	Medtr5g038610.1	Cytosolic fatty-acid binding; Actin-crosslinking proteins 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2139.1.A1_at	A	A1TS	POPTR_0015s08240	POPTR_0015s08240 (11)	scaffold_15:9505400-9505962(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21390.1.S1_at	A	A1TS	POPTR_0006s05850	POPTR_0006s05850 (11)	scaffold_6:4116237-4116949(+) (11)	NA	Q9FG23	CDK5RAP3-like protein	AT5G06830.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 365 Blast hits to 359 proteins in 109 species: Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 	LOC_Os06g21560.1	"CDK5RAP3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213900.1.S1_s_at	A	A1TS	POPTR_0017s11230	POPTR_0017s11230 (11)	scaffold_17:10941153-10941587(+) (11)	NA	NA	NA	AT3G28630.1	Protein of unknown function (DUF569) 	LOC_Os03g58740.1	expressed protein	Medtr5g038610.1	Cytosolic fatty-acid binding; Actin-crosslinking proteins 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213901.1.S1_s_at	A	A3TS	POPTR_0017s11240	POPTR_0017s11270 (11)//POPTR_0017s11250 (11)//POPTR_0017s11240 (11)	scaffold_17:10954709-10955297(+) (11)//scaffold_17:10968801-10969389(+) (11)//scaffold_17:11004303-11004891(+) (11)	NA	Q9C952	Cleavage and polyadenylation specificity factor subunit 3-I	AT1G61010.3	cleavage and polyadenylation specificity factor 73-I 	LOC_Os03g63590.1	"metallo-beta-lactamase, putative, expressed"	Medtr2g006480.1	Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213902.1.S1_at	A	A1TS	POPTR_0017s11280	POPTR_0017s11280 (11)	scaffold_17:11035891-11036278(+) (11)	NA	A7Z050	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1	AT5G15070.1	Phosphoglycerate mutase-like family protein 	LOC_Os03g48300.1	"histidine acid phosphatase, putative, expressed"	Medtr7g008460.1	Histidine acid phosphatase; Ferritin/ribonucleotide reductase-like 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.213902.1.S1_s_at	A	A1TS	POPTR_0017s11280	POPTR_0017s11280 (11)	scaffold_17:11034345-11036393(+) (11)	NA	A7Z050	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1	AT5G15070.1	Phosphoglycerate mutase-like family protein 	LOC_Os03g48300.1	"histidine acid phosphatase, putative, expressed"	Medtr7g008460.1	Histidine acid phosphatase; Ferritin/ribonucleotide reductase-like 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.213903.1.S1_at	A	A1TS	POPTR_0017s11300	POPTR_0017s11300 (10)	scaffold_17:11065903-11066897(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213905.1.S1_at	A	A1MS	POPTR_0017s11370	POPTR_0017s11370 (10)	scaffold_17:11130715-11131837(+) (11)//scaffold_17:11139825-11139891(+) (9)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213906.1.S1_x_at	A	A2TS	POPTR_0017s11370	POPTR_0017s11370 (11)//POPTR_0017s11390 (11)	scaffold_17:11131473-11131736(+) (11)//scaffold_17:11139527-11139790(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213907.1.S1_s_at	A	A1TS	POPTR_0017s11370	POPTR_0017s11370 (11)	scaffold_17:11133228-11133355(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213909.1.S1_at	A	A1TS	POPTR_0017s11440	POPTR_0017s11440 (10)	scaffold_17:11191747-11192866(-) (11)	NA	Q9LFP6	Putative auxin efflux carrier component 5	AT5G15100.1	Auxin efflux carrier family protein 	LOC_Os01g51780.1	"auxin efflux carrier component, putative, expressed"	Medtr7g008720.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.213910.1.S1_at	A	A1TS	POPTR_0017s11450	POPTR_0017s11450 (11)	scaffold_17:11198009-11198752(+) (11)	NA	P15722	Probable pectate lyase P59	AT5G15110.1	Pectate lyase family protein 	LOC_Os06g38510.2	"pectate lyase precursor, putative, expressed"	Medtr8g112850.1	"Pectate lyase, N-terminal; Virulence factor, pectin lyase fold "	NA	GO:0030570|pectate lyase activity	NA
PtpAffx.213911.1.S1_at	A	A1TS	POPTR_0017s11460	POPTR_0017s11460 (11)	scaffold_17:11203165-11204495(-) (11)	NA	O04235	FACT complex subunit SSRP1	AT3G28730.1	high mobility group 	LOC_Os01g08970.1	"SSRP1-like FACT complex subunit, putative, expressed"	Medtr5g089980.1	HMG1/2 (high mobility group) box; Structure-specific recognition protein 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213912.1.S1_at	A	A1TS	POPTR_0017s11470	POPTR_0017s11470 (9)	scaffold_17:11218182-11219306(+) (10)	NA	Q6X5Y6	Ethylene-responsive transcription factor WRI1	AT3G54320.3	Integrase-type DNA-binding superfamily protein 	LOC_Os06g05340.1	AP2 domain containing protein	Medtr7g008760.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.213913.1.S1_at	A	A1TS	POPTR_0017s11490	POPTR_0017s11490 (11)	scaffold_17:11230244-11230697(-) (11)	NA	Q42510	Pattern formation protein EMB30	AT1G13980.2	sec7 domain-containing protein 	LOC_Os02g22090.1	"pattern formation protein EMB30, putative, expressed"	Medtr5g087940.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.213914.1.S1_at	A	A1TS	POPTR_0017s11500	POPTR_0017s11500 (11)	scaffold_17:11242435-11242888(-) (11)	NA	Q42510	Pattern formation protein EMB30	AT1G13980.2	sec7 domain-containing protein 	LOC_Os03g46330.1	"pattern formation protein EMB30, putative, expressed"	Medtr5g087940.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.213915.1.S1_at	A	A1TS	POPTR_0017s11510	POPTR_0017s11510 (11)	scaffold_17:11255584-11256113(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213915.1.S1_s_at	A	A1TS	POPTR_0017s11510	POPTR_0017s11510 (11)	scaffold_17:11256117-11256522(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213916.1.S1_at	A	A1TS	POPTR_0017s11550	POPTR_0017s11550 (11)	scaffold_17:11290084-11291163(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213917.1.S1_at	A	A1TS	POPTR_0017s11570	POPTR_0017s11570 (11)	scaffold_17:11364773-11365310(+) (11)	NA	Q9LXG8	Probable WRKY transcription factor 72	AT5G15130.1	WRKY DNA-binding protein 72 	LOC_Os06g05380.1	"OsWRKY73 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g009100.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.213918.1.S1_at	A	A1TS	POPTR_0017s11600	POPTR_0017s11600 (11)	scaffold_17:11396906-11398531(+) (11)	NA	Q8N442	GTP-binding protein GUF1 homolog	AT5G39900.1	Small GTP-binding protein 	LOC_Os06g05250.2	"GTP-binding protein GUF1, putative, expressed"	Medtr7g009110.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.213920.1.S1_at	A	A1TS	POPTR_0017s11610	POPTR_0017s11610 (10)	scaffold_17:11405757-11406016(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g009210.1	"Quinonprotein alcohol dehydrogenase-like, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213921.1.S1_at	A	A1TS	POPTR_0017s11620	POPTR_0017s11620 (11)	scaffold_17:11411668-11412178(+) (11)	NA	Q5EA79	Aldose 1-epimerase	AT5G15140.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g38530.1	"aldose 1-epimerase, putative, expressed"	Medtr7g009340.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.213922.1.S1_at	A	A1TS	POPTR_0011s03170	POPTR_0011s03170 (9)	scaffold_1:15153090-15153302(-) (11)//scaffold_1:41272543-41272755(+) (11)//scaffold_11:3229831-3230043(+) (9)//scaffold_17:11426903-11427115(-) (11)//scaffold_22:220148-220354(-) (10)//scaffold_3:3000697-3000903(+) (10)//scaffold_4:4955768-4955980(-) (11)//scaffold_8:16062625-16062831(-) (10)	NA	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213923.1.S1_s_at	A	A2MS	POPTR_0004s06250	POPTR_0004s06250 (11)//POPTR_0008s21970 (11)	scaffold_1:15138966-15139293(-) (11)//scaffold_1:40396894-40397221(-) (11)//scaffold_1:41276884-41277210(+) (9)//scaffold_1:43966618-43966651(+) (10)//scaffold_1094:4514-4841(-) (11)//scaffold_17:11432147-11432474(-) (11)//scaffold_22:215717-216043(-) (11)//scaffold_4:4951314-4951641(-) (11)//scaffold_4:18875088-18875415(+) (11)//scaffold_7:7356795-7357122(+) (11)//scaffold_8:16058186-16058508(-) (11)//scaffold_8:16326413-16326740(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.213924.1.S1_at	A	A1TS	POPTR_0017s11680	POPTR_0017s11680 (11)	scaffold_17:11458334-11459247(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213925.1.S1_at	A	A1TS	POPTR_0017s11720	POPTR_0017s11720 (11)	scaffold_17:11475338-11475810(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213926.1.S1_at	A	A1TS	POPTR_0017s11750	POPTR_0017s11750 (11)	scaffold_17:11531938-11532502(+) (11)	NA	Q9LJX0	ABC transporter B family member 19	AT3G28860.1	ATP binding cassette subfamily B19 	LOC_Os04g38570.1	"multidrug resistance protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.213927.1.S1_at	A	A1TS	POPTR_0017s11810	POPTR_0017s11810 (11)	scaffold_17:11696350-11696880(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213929.1.S1_at	A	A1TS	POPTR_0017s11830	POPTR_0017s11830 (11)	scaffold_17:11728510-11728901(+) (11)	NA	Q9FIW5	Putative NAC domain-containing protein 94	AT5G39820.1	NAC domain containing protein 94 	LOC_Os08g33910.1	"no apical meristem protein, putative, expressed"	Medtr5g043830.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.213930.1.S1_at	A	A1TS	POPTR_0017s11840	POPTR_0017s11840 (11)	scaffold_17:11730135-11730466(-) (11)	NA	O04904	"Dihydroorotase, mitochondrial"	AT4G22930.1	pyrimidin 4 	LOC_Os01g54370.1	"dihydropyrimidinase, putative, expressed"	Medtr4g108290.1	Amidohydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213931.1.S1_at	A	A1MS	POPTR_0017s11860	POPTR_0017s11860 (11)	scaffold_17:11744848-11745459(-) (11)	NA	NA	NA	AT5G39785.1	Protein of unknown function (DUF1666) 	LOC_Os09g24700.1	expressed protein	Medtr7g009560.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213932.1.S1_at	A	A1TS	POPTR_0017s11880	POPTR_0017s11880 (11)	scaffold_17:11819555-11819873(+) (11)	NA	P81392	Myb-related protein 306	AT3G47600.1	myb domain protein 94 	LOC_Os08g33940.1	"MYB family transcription factor, putative, expressed"	Medtr6g012780.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213934.1.S1_at	A	A1TS	POPTR_0017s11910	POPTR_0017s11910 (11)	scaffold_17:11899494-11900326(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213935.1.S1_at	A	A1TS	POPTR_0017s11920	POPTR_0017s11920 (11)	scaffold_17:11938818-11938980(-) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT5G15210.1	homeobox protein 30 	LOC_Os09g24820.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr7g009640.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213936.1.S1_at	A	A1TS	POPTR_0017s11930	POPTR_0017s11930 (11)	scaffold_17:11968035-11968184(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213937.1.S1_at	A	A1TS	POPTR_0017s11950	POPTR_0017s11950 (11)	scaffold_17:12047637-12048761(+) (11)	NA	Q9FJL0	Structural maintenance of chromosomes protein 4	AT5G48600.2	structural maintenance of chromosome 3 	LOC_Os05g41750.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	Medtr8g087350.1	Prefoldin; SMCs flexible hinge 	GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0005694|chromosome
PtpAffx.213938.1.S1_at	A	A1TS	POPTR_0017s11960	POPTR_0017s11960 (11)	scaffold_17:12049522-12052285(-) (11)	NA	Q6Z2T3	Aquaporin NIP2-1	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g51110.1	"aquaporin protein, putative, expressed"	Medtr7g009920.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.213939.1.S1_at	A	A1TS	POPTR_0017s11970	POPTR_0017s11970 (11)	scaffold_17:12114406-12114749(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213940.1.S1_at	A	A1TS	POPTR_0017s12010	POPTR_0017s12010 (10)	scaffold_17:12150750-12151335(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213941.1.S1_at	A	A1TS	POPTR_0017s12020	POPTR_0017s12020 (11)	scaffold_17:12159008-12159554(-) (11)	NA	Q9ZQA1	Pentatricopeptide repeat-containing protein At2g36730	AT2G36730.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os09g24640.1	"pentatricopeptide, putative, expressed"	Medtr5g046740.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213942.1.S1_at	A	A1TS	POPTR_0017s12030	POPTR_0017s12030 (11)	scaffold_17:12165164-12165997(-) (11)	NA	Q1PDW5	"ATP-dependent zinc metalloprotease FTSH 6, chloroplastic"	AT5G15250.1	FTSH protease 6 	LOC_Os06g12370.1	"OsFtsH6  FtsH protease, homologue of AtFtsH6, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.213943.1.S1_at	A	A1TS	POPTR_0017s12110	POPTR_0017s12110 (9)	scaffold_17:12264233-12264826(-) (11)	NA	Q9FK93	Pentatricopeptide repeat-containing protein At5g39680	AT5G39680.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g49740.1	"EMB2744, putative, expressed"	Medtr7g010260.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213944.1.S1_at	A	A1TS	POPTR_0017s12120	POPTR_0017s12120 (11)	scaffold_17:12295255-12295691(+) (11)	NA	Q9LHD1	ABC transporter B family member 15	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.213945.1.S1_s_at	A	A1TS	POPTR_0017s12130	POPTR_0017s12130 (11)	scaffold_17:12299479-12300544(+) (11)	NA	NA	NA	AT3G29010.1	Biotin/lipoate A/B protein ligase family 	LOC_Os08g33810.1	"lipoate protein ligase, putative, expressed"	Medtr7g010280.1	Biotin/lipoate A/B protein ligase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0003824|catalytic activity	NA
PtpAffx.213946.1.S1_at	A	A1TS	POPTR_0017s12140	POPTR_0017s12140 (11)	scaffold_17:12302548-12302995(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G69560.1	myb domain protein 105 	LOC_Os08g33800.1	"MYB family transcription factor, putative"	Medtr4g111830.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213947.1.S1_at	A	A1TS	POPTR_0017s12160	POPTR_0017s12160 (9)	scaffold_17:12327538-12328882(-) (9)	NA	Q9MAC5	Polypyrimidine tract-binding protein homolog 1	AT3G01150.1	polypyrimidine tract-binding protein 1 	LOC_Os08g33830.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr3g124540.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213948.1.S1_at	A	A1TS	POPTR_0017s12170	POPTR_0017s12170 (11)	scaffold_17:12350190-12350676(+) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.213949.1.S1_at	A	A1TS	POPTR_0017s12180	POPTR_0017s12180 (11)	scaffold_17:12365437-12366462(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21395.1.S1_at	A	A1TS	POPTR_0004s09730	POPTR_0004s09730 (10)	scaffold_4:8250845-8252629(+) (10)	NA	Q9FKN4	"Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic"	AT5G38290.2	Peptidyl-tRNA hydrolase family protein 	LOC_Os03g22610.2	"peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed"	Medtr7g093400.1	Peptidyl-tRNA hydrolase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004045|aminoacyl-tRNA hydrolase activity	NA
PtpAffx.213950.1.S1_at	A	A1TS	POPTR_0017s12190	POPTR_0017s12190 (11)	scaffold_17:12375297-12375807(+) (11)	NA	Q9LXF4	Pentatricopeptide repeat-containing protein At5g15280	AT5G15280.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g07220.1	"PPR repeat domain containing protein, putative"	Medtr4g089510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213951.1.S1_at	A	A1TS	POPTR_0017s12200	POPTR_0017s12200 (11)	scaffold_17:12369048-12378668(-) (11)	NA	Q9LXF2	Pentatricopeptide repeat-containing protein At5g15300	AT5G15300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g07234.1	"pentatricopeptide, putative"	Medtr7g010380.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213952.1.S1_at	A	A1TS	POPTR_0017s12210	POPTR_0017s12210 (11)	scaffold_17:12392236-12392919(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G61430.1	NAC domain containing protein 100 	LOC_Os04g38720.1	"no apical meristem protein, putative, expressed"	Medtr6g013180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.213953.1.S1_at	A	A1TS	POPTR_0017s12240	POPTR_0017s12240 (11)	scaffold_17:12476253-12476360(+) (11)	NA	P55217	"Cystathionine gamma-synthase, chloroplastic"	AT3G01120.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g25940.4	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.213954.1.S1_at	A	A1TS	POPTR_0017s12260	POPTR_0017s12260 (11)	scaffold_17:12482902-12483341(-) (11)	NA	Q9LJW0	Phosphate transporter PHO1 homolog 9	AT3G29060.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	GO:0001539|ciliary or flagellar motility	GO:0005198|structural molecule activity||GO:0003774|motor activity	GO:0016021|integral to membrane||GO:0009288|bacterial-type flagellum||GO:0043232|intracellular non-membrane-bounded organelle
PtpAffx.213955.1.S1_s_at	A	A1TS	POPTR_0017s12280	POPTR_0017s12280 (11)	scaffold_17:12494591-12494964(+) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g07330.1	"pentatricopeptide, putative, expressed"	Medtr3g110100.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213957.1.S1_s_at	A	A2TS	POPTR_0017s12285	POPTR_0017s12285 (11)//POPTR_0305s00200 (11)	scaffold_17:12499399-12506291(-) (11)//scaffold_305:4084-5135(-) (11)//scaffold_305:10658-12705(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213960.1.S1_at	A	A1TS	POPTR_0017s12350	POPTR_0017s12350 (11)	scaffold_17:12533794-12534350(-) (11)	NA	Q9LXE8	"Pentatricopeptide repeat-containing protein At5g15340, mitochondrial"	AT5G15340.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g08120.1	"pentatricopeptide, putative, expressed"	Medtr6g013350.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213961.1.S1_s_at	A	A1TS	POPTR_0017s12370	POPTR_0017s12370 (11)	scaffold_17:12546091-12546666(+) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os12g39330.1	"AP2 domain containing protein, expressed"	Medtr6g013450.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.213962.1.S1_x_at	A	A1TS	POPTR_0017s12380	POPTR_0017s12380 (11)	scaffold_17:12549432-12550208(-) (11)	NA	Q38997	SNF1-related protein kinase catalytic subunit alpha KIN10	AT3G01090.2	SNF1 kinase homolog 10 	LOC_Os05g45420.3	"CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g092160.1	"Ubiquitin-associated; Tyrosine protein kinase; Kinase-associated, C-terminal; "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213963.1.S1_at	A	A1TS	POPTR_0017s12400	POPTR_0017s12400 (11)	scaffold_17:12579336-12580018(-) (11)	NA	B9RW00	UPF0497 membrane protein 9	AT1G03700.1	Uncharacterised protein family (UPF0497) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213964.1.S1_at	A	A1TS	POPTR_0017s12410	POPTR_0017s12410 (11)	scaffold_17:12586160-12587294(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT5G39420.1	CDC2C 	LOC_Os07g40550.2	"IBS1, putative, expressed"	Medtr7g011090.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213965.1.S1_at	A	A1TS	POPTR_0017s12430	POPTR_0017s12430 (11)	scaffold_17:12591314-12591348(-) (11)	NA	Q9ZQ70	Probable WRKY transcription factor 3	AT2G03340.1	WRKY DNA-binding protein 3 	LOC_Os12g32250.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr7g011100.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.213965.1.S1_s_at	A	A1TS	POPTR_0017s12430	POPTR_0017s12430 (11)	scaffold_17:12593499-12593571(-) (11)	NA	Q9ZQ70	Probable WRKY transcription factor 3	AT2G03340.1	WRKY DNA-binding protein 3 	LOC_Os12g32250.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr7g011100.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.213965.1.S1_x_at	A	A1TS	POPTR_0017s12430	POPTR_0017s12430 (11)	scaffold_17:12591064-12593562(-) (11)	NA	Q9ZQ70	Probable WRKY transcription factor 3	AT2G03340.1	WRKY DNA-binding protein 3 	LOC_Os12g32250.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr7g011100.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.213966.1.S1_at	A	A1TS	POPTR_0017s12440	POPTR_0017s12440 (11)	scaffold_17:12616881-12618658(-) (11)	NA	NA	NA	AT3G29185.2	Domain of unknown function (DUF3598) 	LOC_Os03g55164.1	OsWRKY4 - Superfamily of TFs having WRKY and zinc finger domains	Medtr6g013610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213967.1.S1_at	A	A1TS	POPTR_0017s12480	POPTR_0017s12480 (11)	scaffold_17:12657972-12658387(+) (11)	NA	NA	NA	AT1G69360.1	Plant protein of unknown function (DUF863) 	LOC_Os03g55130.2	expressed protein	Medtr5g046300.1	"Protein of unknown function DUF863, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213968.1.S1_at	A	A1TS	POPTR_0017s12490	POPTR_0017s12490 (11)	scaffold_17:12659751-12659999(-) (11)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os06g18670.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr6g025520.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213968.1.S1_x_at	A	A1TS	POPTR_0017s12490	POPTR_0017s12490 (11)	scaffold_17:12659751-12659999(-) (11)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os06g18670.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr6g025520.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213969.1.S1_at	A	A2TS	POPTR_0017s12500	POPTR_0017s12500 (11)//POPTR_0017s12510 (11)	scaffold_17:12669192-12669329(-) (11)//scaffold_17:12674280-12674417(-) (11)	NA	Q70EK8	Inactive ubiquitin carboxyl-terminal hydrolase 53	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213969.1.S1_s_at	A	A1TS	POPTR_0017s12500	POPTR_0017s12500 (11)	scaffold_17:12668135-12669037(-) (11)	NA	Q70EK8	Inactive ubiquitin carboxyl-terminal hydrolase 53	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213970.1.S1_at	A	A1MS	POPTR_0017s12510	POPTR_0017s12510 (11)	scaffold_17:12675704-12676580(-) (11)	NA	Q8BL06	Inactive ubiquitin carboxyl-terminal hydrolase 54	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213971.1.S1_s_at	A	A1TS	POPTR_0017s12520	POPTR_0017s12520 (11)	scaffold_17:12680269-12681459(-) (11)	NA	A8JBB2	Pescadillo homolog	AT5G14520.1	pescadillo-related 	LOC_Os03g49210.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr7g118450.2	"BRCT; Pescadillo, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213972.1.S1_at	A	A1TS	POPTR_0017s12540	POPTR_0017s12540 (11)	scaffold_17:12710818-12712422(-) (11)	NA	Q8T9S7	"Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN"	AT5G39400.1	Calcium/lipid-binding (CaLB) phosphatase 	LOC_Os12g21890.1	"PTEN, putative, expressed"	Medtr7g011710.1	"Tyrosine specific protein phosphatase and dual specificity protein phosphatase; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213974.1.S1_at	A	A1TS	POPTR_0017s12570	POPTR_0017s12570 (11)	scaffold_17:12789649-12790356(+) (11)	NA	O65718	Cyclic nucleotide-gated ion channel 2	AT5G15410.2	Cyclic nucleotide-regulated ion channel family protein 	LOC_Os03g55100.1	"cyclic nucleotide-gated ion channel 2, putative, expressed"	Medtr7g011470.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213975.1.S1_at	A	A1TS	POPTR_0017s12600	POPTR_0017s12600 (11)	scaffold_17:12811081-12811208(+) (11)	NA	NA	NA	AT5G39380.1	Plant calmodulin-binding protein-related 	LOC_Os03g11290.1	expressed protein	Medtr6g013960.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213976.1.S1_at	A	A1TS	POPTR_0017s12620	POPTR_0017s12620 (11)	scaffold_17:12825517-12825998(+) (11)	NA	Q84J46	Pentatricopeptide repeat-containing protein At3g29290	AT3G29290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g11310.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015660.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213977.1.S1_at	A	A1TS	POPTR_0017s12660	POPTR_0017s12660 (11)	scaffold_17:12870969-12871069(-) (11)	NA	Q9FLZ9	Pentatricopeptide repeat-containing protein At5g39350	AT5G39350.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g60200.1	"pentatricopeptide, putative, expressed"	Medtr4g089900.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213977.1.S1_x_at	A	A1TS	POPTR_0017s12660	POPTR_0017s12660 (11)	scaffold_17:12870904-12871069(-) (11)	NA	Q9FLZ9	Pentatricopeptide repeat-containing protein At5g39350	AT5G39350.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g60200.1	"pentatricopeptide, putative, expressed"	Medtr4g089900.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213978.1.S1_at	A	A1TS	POPTR_0017s12670	POPTR_0017s12670 (11)	scaffold_17:12876547-12877181(+) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G38180.1	FAR1-related sequence 5 	LOC_Os12g12380.3	"transposon protein, putative, unclassified, expressed"	CU179634_13.1	"FAR1; Zinc finger, PMZ-type CU179634.6 56083-52389 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213979.1.S1_at	A	A1TS	POPTR_0017s12690	POPTR_0017s12690 (11)	scaffold_17:12886715-12887645(-) (11)	NA	NA	NA	AT5G46070.1	Guanylate-binding family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213980.1.S1_at	A	A1MS	POPTR_0017s12700	POPTR_0017s12700 (11)	scaffold_17:12889904-12890426(+) (11)	NA	NA	NA	AT3G49645.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g16140.1	"FAD binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213981.1.S1_at	A	A1TS	POPTR_0017s12710	POPTR_0017s12710 (11)	scaffold_17:12894476-12894917(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G02100.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os10g18510.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g012450.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213982.1.S1_at	A	A1TS	POPTR_0017s12740	POPTR_0017s12740 (11)	scaffold_17:12912558-12913134(-) (11)	NA	NA	NA	AT5G67450.1	zinc-finger protein 1 	NA	NA	Medtr5g046750.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.213983.1.S1_at	A	A1TS	POPTR_0017s12750	POPTR_0017s12750 (11)	scaffold_17:12918315-12918776(-) (11)	NA	NA	NA	AT1G26580.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g31230.2	"MYB family transcription factor, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213984.1.S1_at	A	A1TS	POPTR_0017s12770	POPTR_0017s12770 (11)	scaffold_17:12939962-12941012(+) (11)	NA	NA	NA	AT5G15510.2	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g11400.1	"targeting protein-related, putative, expressed"	Medtr6g015060.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213985.1.S1_at	A	A1TS	POPTR_0017s12790	POPTR_0017s12790 (9)	scaffold_17:12962425-12963464(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g10290.1	OsFBX191 - F-box domain containing protein	Medtr7g143210.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213986.1.S1_s_at	A	A1TS	POPTR_0017s12810	POPTR_0017s12810 (11)	scaffold_17:12993312-12994194(+) (11)	NA	Q9LLC1	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic"	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	AC231342_10.1	Biotin-binding site AC231342.3 52802-49143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213987.1.S1_at	A	A1TS	POPTR_0017s12820	POPTR_0017s12820 (11)	scaffold_17:12995290-12996113(-) (11)	NA	Q6KCD5	Nipped-B-like protein	AT5G15540.1	PHD finger family protein 	LOC_Os07g01940.1	"sister chromatid cohesion 2, putative, expressed"	AC231342_23.1	"Zinc finger, FYVE/PHD-type AC231342.3 105368-115322 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213988.1.S1_at	A	A1TS	POPTR_0017s12830	POPTR_0017s12830 (11)	scaffold_17:13016638-13017130(+) (11)	NA	Q9FL79	Expansin-A23	AT5G39280.1	expansin A23 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr7g012340.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213989.1.S1_at	A	A1TS	POPTR_0017s12850	POPTR_0017s12850 (11)	scaffold_17:13030815-13031120(-) (11)	NA	NA	NA	AT5G39240.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	AC231342_34.1	Basic helix-loop-helix dimerisation region bHLH AC231342.3 142448-141677 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213990.1.S1_at	A	A1TS	POPTR_0017s12860	POPTR_0017s12860 (11)	scaffold_17:13042633-13043635(-) (11)	NA	Q9SS44	Transcription initiation factor IIB-2	AT3G10330.1	Cyclin-like family protein 	LOC_Os09g36440.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g108460.1	Cyclin-like; ; 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0008270|zinc ion binding||GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.213991.1.S1_at	A	A1TS	POPTR_0017s12870	POPTR_0017s12870 (11)	scaffold_17:13046102-13049196(-) (11)	NA	Q0D9J1	Alpha-amylase isozyme 2A	AT1G69830.1	alpha-amylase-like 3 	LOC_Os01g51754.1	"alpha-amylase precursor, putative, expressed"	Medtr7g012510.1	"Alpha amylase, catalytic region; Alpha-amylase beta-sheet, C-terminal "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
PtpAffx.213992.1.S1_at	A	A1TS	POPTR_0017s12880	POPTR_0017s12880 (11)	scaffold_17:13058920-13059890(-) (11)	NA	A8IR43	Ribosome biogenesis protein WDR12 homolog	AT5G15550.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g40930.1	"WD repeat-containing protein 12, putative, expressed"	Medtr7g117600.1	WD40-like; NLE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213993.1.S1_at	A	A1TS	POPTR_0017s12900	POPTR_0017s12900 (11)	scaffold_17:13078019-13078329(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213994.1.S1_at	A	A1TS	POPTR_0017s12910	POPTR_0017s12910 (9)	scaffold_17:13094922-13095902(+) (9)	NA	Q9LIA4	Protein RIK	AT3G29390.1	RS2-interacting KH protein 	LOC_Os03g11520.2	expressed protein	NA	NA	NA	GO:0003723|RNA binding	NA
PtpAffx.213996.1.S1_at	A	A1TS	POPTR_0017s12930	POPTR_0017s12930 (11)	scaffold_17:13102321-13102609(-) (11)	NA	NA	NA	AT3G29400.1	exocyst subunit exo70 family protein E1 	LOC_Os01g55799.3	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr3g036640.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.213997.1.S1_at	A	A1TS	POPTR_0005s13360	POPTR_0005s13360 (10)	scaffold_5:10517070-10517596(+) (10)	POPTR_0017s12940 (6)	NA	NA	AT3G29400.1	exocyst subunit exo70 family protein E1 	LOC_Os01g55799.3	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr3g036640.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.213999.1.S1_at	A	A1TS	POPTR_0017s12980	POPTR_0017s12980 (11)	scaffold_17:13155017-13155580(+) (11)	NA	NA	NA	AT5G39200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39140.1); Has 65 Blast hits to 65 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g20270.1	expressed protein	AC231342_20.1	hypothetical protein AC231342.3 98308-97023 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214000.1.S1_at	A	A1TS	POPTR_0017s13000	POPTR_0017s13000 (9)	scaffold_17:13168676-13169485(-) (10)	NA	Q9LMX5	Ninja-family protein AFP2	AT1G13740.1	ABI five binding protein 2 	LOC_Os03g11550.2	"protein of unknown function DUF1675 domain containing protein, expressed"	Medtr5g048030.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214001.1.S1_at	A	A1TS	POPTR_0017s13050	POPTR_0017s13050 (11)	scaffold_17:13208348-13209219(+) (11)	NA	Q9S7W5	Transcription factor TCP13	AT3G02150.2	plastid transcription factor 1 	LOC_Os01g55750.3	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214003.1.S1_at	A	A1TS	POPTR_0017s13070	POPTR_0017s13070 (11)	scaffold_17:13222161-13222448(-) (11)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214004.1.S1_at	A	A1TS	POPTR_0017s13080	POPTR_0017s13080 (11)	scaffold_17:13255102-13256591(+) (11)	NA	Q9FVW3	Probable esterase At1g33990	AT3G29770.1	methyl esterase 11 	LOC_Os07g41230.1	"esterase, putative, expressed"	Medtr3g012890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214005.1.S1_at	A	A1TS	POPTR_0017s13100	POPTR_0017s13100 (11)	scaffold_17:13268716-13268902(+) (11)	NA	Q54KZ8	Eukaryotic translation initiation factor 3 subunit M	AT5G15610.1	Proteasome component (PCI) domain protein 	LOC_Os04g01290.1	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214007.1.S1_s_at	A	A1TS	POPTR_0125s00220	POPTR_0125s00220 (11)	scaffold_125:44108-44243(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214008.1.S1_at	A	A1MS	POPTR_0018s04270	POPTR_0018s04270 (9)	scaffold_18:3603794-3604285(-) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214010.1.S1_at	A	A1TS	POPTR_0018s04230	POPTR_0018s04230 (11)	scaffold_18:3553828-3554338(-) (11)	NA	NA	NA	AT3G53440.2	Homeodomain-like superfamily protein 	NA	NA	Medtr5g032270.1	"IMP dehydrogenase/GMP reductase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214011.1.S1_s_at	A	A2TS	POPTR_0001s04090	POPTR_0018s04220 (11)//POPTR_0001s04090 (11)	scaffold_1:3222229-3222665(+) (11)//scaffold_18:3551514-3551950(+) (11)	NA	Q2T9S3	DNA-directed RNA polymerase III subunit RPC6	AT5G23710.1	DNA binding;DNA-directed RNA polymerases 	LOC_Os06g40110.1	"RNA polymerase Rpc34 subunit family protein, expressed"	Medtr7g020650.1	Copper fist DNA-binding; RNA polymerase Rpc34 subunit 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.214012.1.S1_at	A	A1MS	POPTR_0018s04210	POPTR_0018s04210 (11)	scaffold_18:3550143-3550588(+) (11)	NA	P74003	Protein methyltransferase hemK homolog	AT5G64150.1	RNA methyltransferase family protein 	LOC_Os12g41830.1	"Methyltransferase small domain containing protein, expressed"	AC235488_33.1	Modification methylase HemK; Methyltransferase small AC235488.1 154102-150229 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214013.1.S1_at	A	A1TS	POPTR_0018s04200	POPTR_0018s04200 (11)	scaffold_18:3544105-3544666(-) (11)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT4G31140.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os08g12800.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.214014.1.S1_at	A	A1TS	POPTR_0018s04190	POPTR_0018s04190 (9)	scaffold_18:3537480-3538081(+) (11)	NA	Q8N8Q3	Putative endonuclease FLJ39025	AT4G31150.1	endonuclease V family protein 	LOC_Os06g45330.1	"endonuclease V, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004519|endonuclease activity	NA
PtpAffx.214015.1.S1_at	A	A1MS	POPTR_0018s04170	POPTR_0018s04170 (10)	scaffold_18:3529802-3530546(+) (11)	NA	Q3E6S8	Putative protease Do-like 14	AT5G27660.1	Trypsin family protein with PDZ domain 	LOC_Os01g17070.2	"OsDegp1 - Putative Deg protease homologue, expressed"	Medtr5g073180.1	"PDZ/DHR/GLGF; Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214016.1.S1_at	A	A2TS	POPTR_0018s04160	POPTR_0018s04160 (11)//POPTR_0394s00210 (11)	scaffold_18:3524535-3525511(+) (11)//scaffold_394:3674-4654(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g26550.1	"protease Do-like 14, putative, expressed"	Medtr5g073180.1	"PDZ/DHR/GLGF; Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214017.1.S1_at	A	A2TS	POPTR_0018s04150	POPTR_0018s04150 (11)//POPTR_0394s00220 (9)	scaffold_18:3522394-3522823(-) (11)//scaffold_394:6033-6470(+) (10)	NA	Q3E6S8	Putative protease Do-like 14	AT5G27660.1	Trypsin family protein with PDZ domain 	LOC_Os09g26550.1	"protease Do-like 14, putative, expressed"	Medtr5g073180.1	"PDZ/DHR/GLGF; Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214020.1.S1_at	A	A1TS	POPTR_0018s07180	POPTR_0018s07180 (11)	scaffold_18:7357502-7357895(-) (11)	NA	NA	NA	AT3G13980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). 	LOC_Os03g07920.1	expressed protein	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214021.1.S1_at	A	A1TS	POPTR_0018s07230	POPTR_0018s07230 (11)	scaffold_18:7424045-7431106(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214022.1.S1_at	A	A1TS	POPTR_0018s07240	POPTR_0018s07240 (10)	scaffold_18:7445378-7446104(-) (10)	NA	NA	NA	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214024.1.S1_at	A	A1TS	POPTR_0018s07270	POPTR_0018s07270 (11)	scaffold_18:7470756-7472516(-) (11)	NA	P0CE10	"Putative uncharacterized protein At4g01020, chloroplastic"	AT3G53690.1	RING/U-box superfamily protein 	LOC_Os09g25190.1	"protein binding protein, putative, expressed"	Medtr8g026380.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.214025.1.S1_at	A	A1TS	POPTR_0018s07280	POPTR_0018s07280 (11)	scaffold_18:7474120-7474698(-) (11)	NA	NA	NA	AT3G53690.1	RING/U-box superfamily protein 	LOC_Os08g35060.1	"protein binding protein, putative, expressed"	Medtr8g026380.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.214026.1.S1_at	A	A1TS	POPTR_0018s07300	POPTR_0018s07300 (11)	scaffold_18:7480068-7480325(-) (11)	NA	Q9Z1M8	Protein Red	AT2G26460.1	RED family protein 	LOC_Os11g04950.1	"splicing factor, putative, expressed"	NA	NA	NA	NA	GO:0005634|nucleus
PtpAffx.214027.1.S1_at	A	A1TS	POPTR_0018s07310	POPTR_0018s07310 (10)	scaffold_18:7504874-7505226(+) (10)	NA	Q9SSA7	GDSL esterase/lipase 5	AT1G53920.1	GDSL-motif lipase 5 	LOC_Os02g18870.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031200.1	"Lipolytic enzyme, G-D-S-L; Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214028.1.S1_at	A	A1TS	POPTR_0018s07330	POPTR_0018s07330 (11)	scaffold_18:7512102-7512541(+) (11)	NA	Q9LJP1	GDSL esterase/lipase 4	AT3G14225.1	GDSL-motif lipase 4 	LOC_Os09g04710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.214029.1.S1_at	A	A1TS	POPTR_0018s07340	POPTR_0018s07340 (11)	scaffold_18:7523135-7523328(+) (11)	NA	Q9LJP1	GDSL esterase/lipase 4	AT3G14225.1	GDSL-motif lipase 4 	LOC_Os09g04710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.214029.1.S1_s_at	A	A2TS	POPTR_0018s07330	POPTR_0018s07340 (11)//POPTR_0018s07330 (11)	scaffold_18:7511858-7512323(+) (11)//scaffold_18:7522891-7523356(+) (11)	NA	Q9LJP1	GDSL esterase/lipase 4	AT3G14225.1	GDSL-motif lipase 4 	LOC_Os09g04710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.214031.1.S1_at	A	A1TA	POPTR_0018s07420	POPTR_0018s07420 (10)	scaffold_18:7720937-7721147(+) (10)	NA	Q8RYC8	Auxin response factor 19	AT1G19220.1	auxin response factor 19 	LOC_Os06g09660.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.214032.1.S1_at	A	A1TS	POPTR_0018s07420	POPTR_0018s07420 (11)	scaffold_18:7721527-7722077(-) (11)	NA	Q8RYC8	Auxin response factor 19	AT1G19220.1	auxin response factor 19 	LOC_Os06g09660.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.214034.1.S1_at	A	A1TS	POPTR_0018s07470	POPTR_0018s07470 (11)	scaffold_18:7773308-7773944(-) (11)	NA	Q9SCV5	Beta-galactosidase 7	AT5G20710.1	beta-galactosidase 7 	LOC_Os01g34920.1	"beta-galactosidase precursor, putative, expressed"	Medtr5g023990.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.214035.1.S1_at	A	A1TS	POPTR_0018s07490	POPTR_0018s07490 (11)	scaffold_18:7811653-7812348(+) (11)	NA	Q9NVA4	Transmembrane protein 184C	AT1G23070.1	Protein of unknown function (DUF300) 	LOC_Os03g29340.1	"domain of unknown function domain containing protein, expressed"	Medtr2g049720.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214036.1.S1_at	A	A1TS	POPTR_0018s07500	POPTR_0018s07500 (11)	scaffold_18:7813476-7814042(-) (11)	NA	Q54DU5	von Willebrand factor A domain-containing protein DDB_G0292028	AT1G19110.1	inter-alpha-trypsin inhibitor heavy chain-related 	LOC_Os07g42280.1	"von Willebrand factor type A domain containing protein, expressed"	Medtr2g049710.1	"von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214037.1.S1_at	A	A1TS	POPTR_0018s07510	POPTR_0018s07510 (11)	scaffold_18:7830267-7832359(+) (11)	NA	NA	NA	AT5G20635.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink). "	LOC_Os09g26999.1	"keratin-associated protein 5-4, putative, expressed"	Medtr2g049340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214039.1.S1_at	A	A1TS	POPTR_0018s07590	POPTR_0018s07590 (11)	scaffold_18:8035042-8035343(-) (11)	NA	Q5R7W3	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	AT4G33060.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g40050.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.214040.1.S1_at	A	A1TS	POPTR_0018s07600	POPTR_0018s07600 (11)	scaffold_18:8072261-8072778(+) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT5G26150.1	protein kinase family protein 	LOC_Os02g12660.1	"protein kinase domain containing protein, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214041.1.S1_at	A	A1TS	POPTR_0018s07610	POPTR_0018s07610 (10)	scaffold_18:8144568-8145759(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214045.1.S1_at	A	A1TS	POPTR_0018s07690	POPTR_0018s07690 (11)	scaffold_18:8385262-8386279(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214046.1.S1_at	A	A1TS	POPTR_0018s07720	POPTR_0018s07720 (11)	scaffold_18:8421224-8421491(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214048.1.S1_at	A	A1TS	POPTR_0018s07730	POPTR_0018s07730 (11)	scaffold_18:8433538-8434513(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214049.1.S1_at	A	A1MS	POPTR_0018s07740	POPTR_0018s07740 (11)	scaffold_18:8445026-8445450(-) (11)	NA	NA	NA	AT2G26200.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	Medtr1g019870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214050.1.S1_at	A	A1TS	POPTR_0018s04570	POPTR_0018s04570 (11)	scaffold_18:3858805-3859318(-) (11)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214052.1.S1_at	A	A1TS	POPTR_0018s04610	POPTR_0018s04610 (11)	scaffold_18:3876989-3877758(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214053.1.S1_at	A	A1TS	POPTR_0018s04630	POPTR_0018s04630 (11)	scaffold_18:3896040-3896631(-) (11)	NA	NA	NA	AT3G20430.1	"CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os01g37842.1	expressed protein	Medtr8g138000.1	"RNA polymerase, alpha subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214054.1.S1_at	A	A1TS	POPTR_0018s04640	POPTR_0018s04640 (11)	scaffold_18:3911015-3911478(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214056.1.S1_at	A	A1TS	POPTR_0018s04730	POPTR_0018s04730 (11)	scaffold_18:4090094-4090378(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214057.1.S1_at	A	A1TS	POPTR_0018s04750	POPTR_0018s04750 (11)	scaffold_18:4098828-4099367(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214058.1.S1_at	A	A1TS	POPTR_0018s04780	POPTR_0018s04780 (11)	scaffold_18:4141578-4141922(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214059.1.S1_s_at	A	A1TS	POPTR_0018s04820	POPTR_0018s04820 (11)	scaffold_18:4193065-4193255(-) (11)	NA	Q42980	Oleosin 16 kDa	AT2G25890.1	Oleosin family protein 	LOC_Os04g46200.1	"oleosin, putative, expressed"	Medtr3g133000.1	Oleosin 	NA	NA	GO:0043231|intracellular membrane-bounded organelle||GO:0016021|integral to membrane||GO:0012511|monolayer-surrounded lipid storage body
PtpAffx.214060.1.S1_at	A	A1TS	POPTR_0018s04850	POPTR_0018s04850 (11)	scaffold_18:4230396-4231603(-) (11)	NA	Q5XD45	Putative hydrolase M6_Spy0533	AT2G25870.1	haloacid dehalogenase-like hydrolase family protein 	LOC_Os01g53720.2	expressed protein	Medtr1g008360.1	"Protein of unknown function UPF0054; HAD-superfamily hydrolase subfamily IIB; Zinc finger, C2H2-type "	GO:0008152|metabolic process	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.214062.1.S1_at	A	A1TS	POPTR_0018s04890	POPTR_0018s04890 (11)	scaffold_18:4306571-4306683(-) (11)	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os02g13520.1	"OsIAA7 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g016050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.214062.1.S1_x_at	A	A1TS	POPTR_0018s04890	POPTR_0018s04890 (9)	scaffold_18:4306294-4306683(-) (10)	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os02g13520.1	"OsIAA7 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g016050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.214065.1.S1_at	A	A1TS	POPTR_0018s05040	POPTR_0018s05040 (11)	scaffold_18:4460465-4461130(-) (11)	NA	NA	NA	AT1G23550.1	similar to RCD one 2 	LOC_Os03g12820.2	"ATP8, putative, expressed"	Medtr4g136750.1	"PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214066.1.S1_s_at	A	A1TS	POPTR_0018s05080	POPTR_0018s05080 (11)	scaffold_18:4508588-4509505(-) (11)	NA	P48731	Homeobox protein ATH1	AT4G32980.1	homeobox gene 1 	LOC_Os02g13310.1	"homeobox domain containing protein, expressed"	Medtr1g020740.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214067.1.S1_at	A	A1TS	POPTR_0018s05080	POPTR_0018s05080 (11)	scaffold_18:4510071-4510630(-) (11)	NA	P48731	Homeobox protein ATH1	AT4G32980.1	homeobox gene 1 	LOC_Os02g13310.1	"homeobox domain containing protein, expressed"	Medtr1g020740.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214068.1.S1_at	A	A1TS	POPTR_0018s05090	POPTR_0018s05090 (11)	scaffold_18:4539152-4539673(-) (11)	NA	O80992	Abscisic acid receptor PYL2	AT2G26040.1	PYR1-like 2 	LOC_Os02g13330.1	"bet v I allergen family protein, putative"	Medtr1g020630.1	Bet v I allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214069.1.S1_at	A	A1TS	POPTR_0018s05100	POPTR_0018s05100 (11)	scaffold_18:4568329-4569352(-) (11)	NA	B5X0N6	K(+) efflux antiporter 6	AT5G11800.1	K+ efflux antiporter 6 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr4g160810.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.214069.1.S1_s_at	A	A2TS	POPTR_0006s24650	POPTR_0018s05100 (11)//POPTR_0006s24650 (11)	scaffold_18:4568033-4570337(-) (11)//scaffold_6:23235200-23237430(+) (11)	NA	B5X0N6	K(+) efflux antiporter 6	AT5G11800.1	K+ efflux antiporter 6 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr4g160810.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.214072.1.S1_at	A	A1TS	POPTR_0018s05170	POPTR_0018s05170 (11)	scaffold_18:4677651-4679002(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214073.1.S1_at	A	A1TS	POPTR_0018s05180	POPTR_0018s05180 (11)	scaffold_18:4680251-4680504(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214074.1.S1_at	A	A1TS	POPTR_0018s05190	POPTR_0018s05190 (10)	scaffold_18:4687055-4687108(+) (10)	NA	O04089	"Zinc transporter 4, chloroplastic"	AT1G10970.1	zinc transporter 4 precursor 	LOC_Os06g37010.2	"metal cation transporter, putative, expressed"	Medtr3g139990.1	"Cytochrome c oxidase, subunit I; Zinc/iron permease "	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.214077.1.S1_at	A	A1TS	POPTR_0018s05240	POPTR_0018s05240 (11)	scaffold_18:4756180-4756808(+) (11)	NA	Q9LRW1	LOB domain-containing protein 22	AT3G13850.1	LOB domain-containing protein 22 	LOC_Os01g60960.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g018690.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214078.1.S1_at	A	A1TS	POPTR_0018s05250	POPTR_0018s05250 (11)	scaffold_18:4759251-4759458(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214080.1.S1_at	A	A1TS	POPTR_0018s05270	POPTR_0018s05270 (11)	scaffold_18:4788538-4789089(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214081.1.S1_at	A	A1TS	POPTR_0018s05290	POPTR_0018s05290 (11)	scaffold_18:4808288-4808793(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214082.1.S1_at	A	A1MS	POPTR_0018s05310	POPTR_0018s05310 (11)	scaffold_18:4829487-4830039(-) (11)	NA	Q6YYC0	Zinc finger CCCH domain-containing protein 55	AT3G26850.2	histone-lysine N-methyltransferases 	LOC_Os03g11580.1	expressed protein	Medtr2g071300.1	"Zinc finger, CCCH-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214083.1.S1_at	A	A1TS	POPTR_0018s05310	POPTR_0018s05310 (11)	scaffold_18:4832751-4832870(-) (11)	NA	Q6YYC0	Zinc finger CCCH domain-containing protein 55	AT3G26850.2	histone-lysine N-methyltransferases 	LOC_Os03g11580.1	expressed protein	Medtr2g071300.1	"Zinc finger, CCCH-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214085.1.S1_at	A	A1TS	POPTR_0018s05330	POPTR_0018s05330 (11)	scaffold_18:4852581-4853127(-) (11)	NA	NA	NA	AT1G74120.1	Mitochondrial transcription termination factor family protein 	LOC_Os12g30610.1	expressed protein	Medtr2g071270.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214086.1.S1_at	A	A1TS	POPTR_0018s05340	POPTR_0018s05340 (11)	scaffold_18:4863077-4863960(+) (11)	NA	NA	NA	AT5G07950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g11450.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214086.1.S1_s_at	A	A1TS	POPTR_0018s05340	POPTR_0018s05340 (11)	scaffold_18:4863112-4865258(+) (11)	NA	NA	NA	AT5G07950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g11450.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214087.1.S1_at	A	A1TS	POPTR_0018s05380	POPTR_0018s05380 (11)	scaffold_18:4923747-4924219(+) (11)	NA	Q7Y201	Probable pectinesterase/pectinesterase inhibitor 13	AT2G26450.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os09g26360.1	"pectinesterase, putative, expressed"	Medtr8g133300.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.214089.1.S1_at	A	A1TS	POPTR_0018s05430	POPTR_0018s05430 (11)	scaffold_18:4991935-4993010(-) (11)	NA	Q55E68	Cleavage and polyadenylation specificity factor subunit 5	AT4G29820.1	homolog of CFIM-25 	LOC_Os08g30820.1	"cleavage and polyadenylation specificity factor subunit 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21409.1.S1_at	A	A1MS	POPTR_0002s10710	POPTR_0002s10710 (9)	scaffold_2:7791446-7791643(+) (9)	NA	Q9FE59	Sucrose transport protein SUC4	AT1G09960.1	sucrose transporter 4 	LOC_Os02g58080.1	"transporter, major facilitator family, putative, expressed"	Medtr5g076420.1	"Sucrose/H+ symporter, plant; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21409.1.S1_s_at	A	A1TS	POPTR_0002s10710	POPTR_0002s10710 (11)	scaffold_2:7791093-7791390(+) (11)	NA	Q9FE59	Sucrose transport protein SUC4	AT1G09960.1	sucrose transporter 4 	LOC_Os02g58080.1	"transporter, major facilitator family, putative, expressed"	Medtr5g076420.1	"Sucrose/H+ symporter, plant; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214090.1.S1_at	A	A1TS	POPTR_0018s05450	POPTR_0018s05450 (9)	scaffold_18:5003510-5003706(+) (11)	NA	NA	NA	NA	NA	NA	NA	AC231342_9.1	"Ankyrin, related AC231342.3 30422-31765 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214091.1.S1_at	A	A1TS	POPTR_0018s05480	POPTR_0018s05480 (11)	scaffold_18:5056150-5056683(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.214092.1.S1_at	A	A1TS	POPTR_0018s05490	POPTR_0018s05490 (11)	scaffold_18:5058745-5059718(-) (11)	NA	NA	NA	AT4G12070.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g48640.1	expressed protein	Medtr3g139500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214093.1.S1_s_at	A	A3TS	POPTR_0018s05520	POPTR_0018s05520 (11)//POPTR_0310s00200 (11)//POPTR_0018s05540 (11)	scaffold_18:5128707-5128756(+) (11)//scaffold_18:5194343-5194392(+) (11)//scaffold_310:6262-6311(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os02g01380.1	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214094.1.S1_s_at	A	A3TS	POPTR_0018s05540	POPTR_0018s05540 (11)//POPTR_0018s05520 (10)//POPTR_0310s00200 (10)	scaffold_18:5128775-5128999(+) (10)//scaffold_18:5194411-5194741(+) (11)//scaffold_310:6019-6243(-) (10)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os02g01380.1	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214097.1.S1_at	A	A2TS	POPTR_0002s17705	POPTR_0002s17705 (11)//POPTR_0721s00200 (11)	scaffold_2:13536437-13536769(+) (11)//scaffold_721:4535-4867(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214099.1.S1_at	A	A1TS	POPTR_0018s08450	POPTR_0018s08450 (11)	scaffold_18:9382832-9384945(-) (11)	NA	NA	NA	AT2G26310.1	Chalcone-flavanone isomerase family protein 	LOC_Os02g53810.1	expressed protein	Medtr1g019800.1	hypothetical protein 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
PtpAffx.214100.1.S1_at	A	A1TS	POPTR_0018s08440	POPTR_0018s08440 (11)	scaffold_18:9379945-9380105(-) (11)	NA	Q6K7G9	Endoglucanase 8	AT3G43860.1	glycosyl hydrolase 9A4 	LOC_Os02g53820.2	"endoglucanase, putative, expressed"	Medtr3g139180.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214101.1.S1_at	A	A1TS	POPTR_0018s08430	POPTR_0018s08430 (11)	scaffold_18:9375373-9378402(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214102.1.S1_at	A	A1TS	POPTR_0018s08400	POPTR_0018s08400 (11)	scaffold_18:9348219-9348840(-) (11)	NA	Q944S9	MADS-box transcription factor 16	AT1G18750.1	AGAMOUS-like 65 	LOC_Os11g43740.1	"OsMADS68 - MADS-box family gene with MIKC* type-box, expressed"	Medtr5g044830.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.214103.1.S1_at	A	A1MS	POPTR_0018s08390	POPTR_0018s08390 (11)	scaffold_18:9341746-9342667(+) (11)	NA	Q42371	LRR receptor-like serine/threonine-protein kinase ERECTA	AT2G26330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os06g10230.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr1g019670.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214104.1.S1_x_at	A	A1TS	POPTR_0018s08370	POPTR_0018s08370 (11)	scaffold_18:9311148-9311300(-) (11)	NA	Q86UW6	NEDD4-binding protein 2	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.4	"smr domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214107.1.S1_at	A	A1MS	POPTR_0018s08350	POPTR_0018s08350 (10)	scaffold_18:9302410-9302813(+) (11)	NA	A4GYP9	DNA-directed RNA polymerase subunit beta'	ATCG00180.1	DNA-directed RNA polymerase family protein 	LOC_Os02g24614.1	"DNA-directed RNA polymerase subunit beta, putative"	Medtr3g083900.1	"RNA polymerase Rpb1, domain 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214108.1.S1_at	A	A1MS	POPTR_0018s08340	POPTR_0018s08340 (9)	scaffold_18:9287868-9289166(-) (9)	NA	Q5N870	Endoribonuclease Dicer homolog 3a	AT3G43920.2	dicer-like 3 	LOC_Os10g34430.1	"Dicer, putative, expressed"	Medtr3g139020.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.214109.1.S1_at	A	A1TS	POPTR_0018s08310	POPTR_0018s08310 (11)	scaffold_18:9205211-9205960(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214111.1.S1_at	A	A1TS	POPTR_0018s08270	POPTR_0018s08270 (10)	scaffold_18:9167839-9168471(+) (11)	NA	Q9LU15	Histidine-containing phosphotransfer protein 4	AT3G16360.2	HPT phosphotransmitter 4 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g122150.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.214112.1.S1_at	A	A1TS	POPTR_0018s08230	POPTR_0018s08230 (11)	scaffold_18:9058159-9058657(-) (11)	NA	P40234	Casein kinase I homolog 2	AT2G25760.1	Protein kinase family protein 	LOC_Os01g54100.1	"CK1_CaseinKinase_1a.2 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g008170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214113.1.S1_at	A	A1TS	POPTR_0018s08200	POPTR_0018s08200 (11)	scaffold_18:9033819-9034348(-) (11)	NA	P59082	Lachrymatory-factor synthase	AT2G25770.2	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os01g52570.1	"lachrymatory factor synthase, putative, expressed"	Medtr3g130360.1	"Lachrymatory-factor synthase precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214114.1.S1_at	A	A1MS	POPTR_0018s08185	POPTR_0018s08185 (11)	scaffold_18:9021411-9021705(-) (11)	NA	NA	NA	AT4G32870.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	NA	NA	Medtr3g130360.1	"Lachrymatory-factor synthase precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214115.1.S1_at	A	A1TS	POPTR_0018s08170	POPTR_0018s08170 (11)	scaffold_18:9000128-9001569(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214116.1.S1_at	A	A1TS	POPTR_0018s08160	POPTR_0018s08160 (11)	scaffold_18:8996818-8997247(-) (11)	NA	NA	NA	AT5G25840.1	Protein of unknown function (DUF1677) 	LOC_Os06g36040.1	expressed protein	Medtr8g015470.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214117.1.S1_at	A	A1TS	POPTR_0018s08150	POPTR_0018s08150 (9)	scaffold_18:8972283-8972852(-) (11)	NA	O82318	Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790	AT2G25790.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g04190.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr3g130450.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.214118.1.S1_s_at	A	A2TS	POPTR_0018s02650	POPTR_0018s02650 (11)//POPTR_0018s08140 (11)	scaffold_18:2386990-2387264(-) (11)//scaffold_18:2389072-2389346(-) (11)//scaffold_18:4623974-4624248(+) (9)//scaffold_18:8952287-8952561(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214119.1.S1_at	A	A1TS	POPTR_0018s08080	POPTR_0018s08080 (11)	scaffold_18:8853063-8853262(-) (11)//scaffold_6:8036646-8036841(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214120.1.S1_at	A	A1TS	POPTR_0018s08030	POPTR_0018s08030 (10)	scaffold_18:8809785-8810285(+) (10)	NA	NA	NA	AT2G25800.1	Protein of unknown function (DUF810) 	LOC_Os09g17760.1	expressed protein	Medtr3g130600.1	Munc13 homology 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214121.1.S1_at	A	A1TS	POPTR_0018s08010	POPTR_0018s08010 (11)	scaffold_18:8788055-8789530(+) (11)	NA	Q8VY26	"Carotenoid cleavage dioxygenase 8, chloroplastic"	AT4G32810.1	carotenoid cleavage dioxygenase 8 	LOC_Os01g54270.1	"transposon protein, putative, unclassified"	Medtr3g130620.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214126.1.S1_at	A	A1TS	POPTR_0018s00300	POPTR_0018s00300 (11)	scaffold_18:213855-215457(+) (11)	NA	Q9NQT4	Exosome complex exonuclease RRP46	AT3G46210.6	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os03g63720.1	"exosome complex exonuclease, putative, expressed"	Medtr7g084770.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.214127.1.S1_s_at	A	A3TS	POPTR_0018s00310	POPTR_0018s00310 (11)//POPTR_0209s00200 (11)//POPTR_0209s00220 (10)	scaffold_18:233433-233813(+) (11)//scaffold_209:654-1038(+) (11)//scaffold_209:25732-26115(+) (10)	NA	Q84KG5	"Carotenoid 9,10(9',10')-cleavage dioxygenase"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os09g15240.1	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21413.1.S1_at	A	A1TS	POPTR_0006s16030	POPTR_0006s16030 (11)	scaffold_6:13855878-13856409(+) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT3G24420.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g10620.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g023380.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21413.1.S1_s_at	A	A1TS	POPTR_0006s16030	POPTR_0006s16030 (11)	scaffold_6:13855973-13856206(+) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT3G24420.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g10620.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g023380.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214131.1.S1_s_at	A	A1TS	POPTR_0209s00230	POPTR_0209s00230 (9)	scaffold_18:238151-238846(+) (9)//scaffold_209:29845-30540(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g15240.1	"carotenoid cleavage dioxygenase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214132.1.S1_at	A	A1MS	POPTR_0018s00350	POPTR_0018s00350 (11)	scaffold_18:266964-267760(+) (11)	NA	Q94IR2	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os08g28240.1	"carotenoid cleavage dioxygenase, putative"	Medtr5g025270.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214134.1.S1_at	A	A1TS	POPTR_0018s00390	POPTR_0018s00390 (11)	scaffold_18:284844-285351(-) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT1G10340.1	Ankyrin repeat family protein 	LOC_Os09g34280.4	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g122370.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214135.1.S1_at	A	A1TS	POPTR_0018s00410	POPTR_0018s00410 (11)	scaffold_18:314693-314966(-) (11)	NA	NA	NA	AT3G22810.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os01g13070.1	expressed protein	AC225517_20.1	Pleckstrin homology-type AC225517.6 91599-94192 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214137.1.S1_at	A	A1TS	POPTR_0018s00510	POPTR_0018s00510 (11)	scaffold_18:448611-449558(-) (11)	NA	Q94FY7	"Tocopherol cyclase, chloroplastic"	AT4G32770.1	"tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) "	LOC_Os02g17650.1	"tocopherol cyclase, chloroplast precursor, putative, expressed"	AC225517_3.1	"Tocopherol cyclase, chloroplast precursor, putative AC225517.6 12507-17093 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214138.1.S1_at	A	A1TS	POPTR_0018s00520	POPTR_0018s00520 (11)	scaffold_18:455693-456255(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT1G08070.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g14130.3	"pentatricopeptide, putative, expressed"	Medtr8g119600.1	Pancreatic ribonuclease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214139.1.S1_at	A	A1TS	POPTR_0018s00540	POPTR_0018s00540 (10)	scaffold_18:467944-469404(-) (10)	NA	NA	NA	AT1G27600.2	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os04g01280.1	"glycosyltransferase family 43 protein, putative, expressed"	AC225517_25.1	"Glycosyl transferase, family 43 AC225517.6 110047-106863 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214140.1.S1_at	A	A1MS	POPTR_0018s00550	POPTR_0018s00550 (11)	scaffold_18:478377-478574(+) (11)	NA	Q5ZL00	Uncharacterized protein KIAA0090 homolog	AT5G11560.1	catalytics 	LOC_Os05g14170.1	expressed protein	AC225517_26.1	Quinonprotein alcohol dehydrogenase-like AC225517.6 112314-118182 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214141.1.S1_at	A	A1TS	POPTR_0018s00560	POPTR_0018s00560 (11)	scaffold_18:484715-485149(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214142.1.S1_at	A	A1TS	POPTR_0018s00570	POPTR_0018s00570 (11)	scaffold_18:495563-496001(+) (11)	NA	Q8HXW0	L-gulonolactone oxidase	AT5G11540.1	"D-arabinono-1,4-lactone oxidase family protein "	LOC_Os01g49360.1	"FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed"	Medtr5g005730.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.214143.1.S1_at	A	A1TS	POPTR_0018s00600	POPTR_0018s00600 (11)	scaffold_18:530292-531837(+) (11)	NA	Q571G4	Protein lin-54 homolog	AT4G29000.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os01g55580.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	AC225507_24.1	"Tesmin/TSO1-like, CXC AC225507.11 107125-103243 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214144.1.S1_at	A	A1TS	POPTR_0018s00620	POPTR_0018s00620 (10)	scaffold_18:555198-556924(-) (10)	NA	Q5SRX1	TOM1-like protein 2	AT4G32760.1	ENTH/VHS/GAT family protein 	LOC_Os02g17350.2	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.214145.1.S1_at	A	A1TS	POPTR_0018s00640	POPTR_0018s00640 (11)	scaffold_18:568281-568440(+) (11)	NA	Q94KR7	"Translation initiation factor IF-1, chloroplastic"	AT4G11175.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os05g22716.1	"translation initiation factor IF-1, chloroplast, putative"	Medtr8g070990.1	"S1, IF1 type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.214145.1.S1_x_at	A	A1TS	POPTR_0018s00640	POPTR_0018s00640 (11)	scaffold_18:568281-568464(+) (11)	NA	Q94KR7	"Translation initiation factor IF-1, chloroplastic"	AT4G11175.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os05g22716.1	"translation initiation factor IF-1, chloroplast, putative"	Medtr8g070990.1	"S1, IF1 type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.214146.1.S1_s_at	A	A2TS	POPTR_0018s00650	POPTR_0018s00650 (11)//POPTR_0018s00911 (10)	scaffold_18:572316-572906(+) (11)//scaffold_18:847747-848337(-) (10)	NA	O64773	Probable CCR4-associated factor 1 homolog 5	AT1G61470.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.214147.1.S1_at	A	A1TS	POPTR_0018s00660	POPTR_0018s00660 (11)	scaffold_18:579021-579428(+) (11)	NA	NA	NA	AT4G32750.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g17250.1	expressed protein	AC225507_2.1	hypothetical protein AC225507.11 13063-9895 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214148.1.S1_at	A	A1TS	POPTR_0018s00680	POPTR_0018s00680 (11)	scaffold_18:587202-587687(+) (11)	NA	NA	NA	AT2G20740.1	Tetraspanin family protein 	LOC_Os04g58330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214149.1.S1_at	A	A1TS	POPTR_0018s00760	POPTR_0018s00760 (11)	scaffold_18:654713-654777(-) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.214151.1.S1_at	A	A1TS	POPTR_0018s00790	POPTR_0018s00790 (11)	scaffold_18:694929-696331(+) (11)	NA	NA	NA	AT5G25752.1	rhomboid-like protein 11 	LOC_Os05g13370.1	"OsRhmbd12 - Putative Rhomboid homologue, expressed"	Medtr1g009400.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.214153.1.S1_at	A	A1TS	POPTR_0018s00840	POPTR_0018s00840 (11)	scaffold_18:758343-760488(-) (11)	NA	Q8VZ59	Flavin-containing monooxygenase YUCCA6	AT5G25620.1	Flavin-binding monooxygenase family protein 	LOC_Os01g53200.1	"flavin monooxygenase, putative, expressed"	Medtr1g009490.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214154.1.S1_at	A	A1TS	POPTR_0018s00860	POPTR_0018s00860 (11)	scaffold_18:786121-787641(-) (11)	NA	Q8TDG4	Helicase POLQ-like	AT4G32700.2	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding 	LOC_Os12g19370.1	"DNA polymerase I family protein, expressed"	Medtr1g009720.1	DNA-directed DNA polymerase; ATP-requiring DNA helicase RecQ; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity||GO:0005524|ATP binding	NA
PtpAffx.214155.1.S1_at	A	A1TS	POPTR_0018s00860	POPTR_0018s00860 (9)	scaffold_18:793518-794505(-) (11)	NA	Q8TDG4	Helicase POLQ-like	AT4G32700.2	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding 	LOC_Os12g19370.1	"DNA polymerase I family protein, expressed"	Medtr1g009720.1	DNA-directed DNA polymerase; ATP-requiring DNA helicase RecQ; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity||GO:0005524|ATP binding	NA
PtpAffx.214156.1.S1_at	A	A1TS	POPTR_0018s00860	POPTR_0018s00860 (10)	scaffold_18:796067-796612(-) (10)	NA	Q8TDG4	Helicase POLQ-like	AT4G32700.2	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding 	LOC_Os12g19370.1	"DNA polymerase I family protein, expressed"	Medtr1g009720.1	DNA-directed DNA polymerase; ATP-requiring DNA helicase RecQ; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity||GO:0005524|ATP binding	NA
PtpAffx.214157.1.S1_s_at	A	A1TS	POPTR_0018s00890	POPTR_0018s00890 (11)	scaffold_18:836633-836891(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214158.1.S1_at	A	A1TS	POPTR_0018s00900	POPTR_0018s00900 (11)	scaffold_18:842271-842581(+) (11)	NA	NA	NA	AT4G32690.1	hemoglobin 3 	LOC_Os06g39140.1	"hemoglobin-like protein HbO, putative, expressed"	Medtr1g009840.1	Globin-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214159.1.S1_at	A	A1MS	POPTR_0018s00911	POPTR_0018s00911 (11)	scaffold_18:847543-847727(-) (11)	POPTR_0018s00650 (7)	Q9SHJ0	Probable CCR4-associated factor 1 homolog 1	AT1G06450.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.214160.1.S1_at	A	A1MS	POPTR_0018s00915	POPTR_0018s00915 (11)	scaffold_18:850758-851288(-) (11)	NA	P0C898	Putative pentatricopeptide repeat-containing protein At3g15130	AT3G15130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g58980.1	"pentatricopeptide, putative"	Medtr2g110310.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214161.1.S1_at	A	A1TS	POPTR_0018s00920	POPTR_0018s00920 (11)	scaffold_18:853053-853588(+) (11)	NA	Q9SIL5	Pentatricopeptide repeat-containing protein At2g20540	AT2G20540.1	mitochondrial editing factor  21 	LOC_Os05g36350.1	"pentatricopeptide, putative, expressed"	Medtr3g132780.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214163.1.S1_at	A	A1TS	POPTR_0018s00950	POPTR_0018s00950 (11)	scaffold_18:866247-867258(+) (11)	NA	NA	NA	AT2G25730.1	unknown protein; Has 157 Blast hits to 144 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os01g40990.3	expressed protein	Medtr3g135820.1	Tetratricopeptide TPR2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214164.1.S1_at	A	A1TS	POPTR_0018s00990	POPTR_0018s00990 (9)	scaffold_18:910471-911188(-) (9)	NA	O82380	"Pentatricopeptide repeat-containing protein At2g29760, chloroplastic"	AT2G29760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g55840.1	"pentatricopeptide, putative, expressed"	Medtr7g110740.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214165.1.S1_at	A	A1TS	POPTR_0018s01010	POPTR_0018s01010 (11)	scaffold_18:921268-921612(+) (11)	NA	Q9LHF1	Leucine-rich repeat extensin-like protein 4	AT3G24480.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g41120.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr6g102080.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.214166.1.S1_at	A	A1TS	POPTR_0018s01020	POPTR_0018s01020 (11)	scaffold_18:932039-932595(-) (11)	NA	Q8RXE7	Probable ADP-ribosylation factor GTPase-activating protein AGD14	AT4G32630.1	ArfGap/RecO-like zinc finger domain-containing protein 	LOC_Os02g11820.1	"GTPase-activating protein, putative, expressed"	Medtr6g102260.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	GO:0005622|intracellular
PtpAffx.214167.1.S1_at	A	A1TS	POPTR_0018s01030	POPTR_0018s01030 (11)	scaffold_18:942633-942974(-) (11)	NA	NA	NA	AT4G32620.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os01g08430.1	expressed protein	Medtr1g117100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214168.1.S1_at	A	A1TS	POPTR_0018s01040	POPTR_0018s01040 (11)	scaffold_18:959361-960608(+) (11)	NA	NA	NA	AT2G25670.2	BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink). 	LOC_Os01g08410.1	"early fruit mRNA, putative, expressed"	Medtr3g136050.1	"M355, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214169.1.S1_at	A	A1TS	POPTR_0018s01050	POPTR_0018s01050 (11)	scaffold_18:970094-973890(+) (11)	NA	NA	NA	AT2G25660.1	embryo defective 2410 	LOC_Os01g08420.1	"EMB2410, putative, expressed"	Medtr3g136060.1	"EMB2410, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21417.1.S1_at	A	A2TS	POPTR_0008s00390	POPTR_0010s26110 (11)//POPTR_0008s00390 (11)	scaffold_10:21457562-21460148(-) (11)//scaffold_8:142689-145120(+) (11)	NA	Q8LSN3	Phytochrome-associated serine/threonine protein phosphatase	AT1G50370.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g49690.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g047030.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.214170.1.S1_at	A	A1TS	POPTR_0018s01050	POPTR_0018s01050 (11)	scaffold_18:976649-977442(+) (11)	NA	NA	NA	AT2G25660.1	embryo defective 2410 	LOC_Os01g08420.1	"EMB2410, putative, expressed"	Medtr3g136060.1	"EMB2410, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214171.1.S1_at	A	A1TS	POPTR_0018s01050	POPTR_0018s01050 (11)	scaffold_18:980995-981214(+) (11)	NA	NA	NA	AT2G25660.1	embryo defective 2410 	LOC_Os01g08420.1	"EMB2410, putative, expressed"	Medtr3g136060.1	"EMB2410, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214172.1.S1_at	A	A1TS	POPTR_0018s01050	POPTR_0018s01050 (10)	scaffold_18:981565-983013(+) (10)	NA	NA	NA	AT2G25660.1	embryo defective 2410 	LOC_Os01g08420.1	"EMB2410, putative, expressed"	Medtr3g136060.1	"EMB2410, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214173.1.S1_at	A	A1TS	POPTR_0018s01070	POPTR_0018s01070 (10)	scaffold_18:993634-993941(+) (10)	NA	Q5R8J8	DnaJ homolog subfamily B member 4	AT5G25530.1	DNAJ heat shock family protein 	LOC_Os08g06460.1	"dnaJ domain containing protein, expressed"	Medtr3g136130.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.214174.1.S1_at	A	A1TS	POPTR_0018s01080	POPTR_0018s01080 (11)	scaffold_18:997110-997510(-) (11)	NA	Q92576	PHD finger protein 3	AT5G25520.2	SPOC domain / Transcription elongation factor S-II protein 	LOC_Os02g11780.1	"transcription factor S-II, central domain containing protein, expressed"	Medtr3g136140.1	"Transcription elongation factor S-II, central region; SPOC "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
PtpAffx.214175.1.S1_at	A	A1TS	POPTR_0018s01140	POPTR_0018s01140 (11)	scaffold_18:1032031-1033653(-) (11)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.214175.1.S1_x_at	A	A1TS	POPTR_0018s01140	POPTR_0018s01140 (11)	scaffold_18:1032031-1033653(-) (11)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.214176.1.S1_at	A	A1MS	POPTR_0018s01150	POPTR_0018s01150 (11)	scaffold_18:1060356-1060724(+) (11)	NA	Q9LFM6	"Pentatricopeptide repeat-containing protein At5g11310, mitochondrial"	AT5G11310.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g32170.1	"pentatricopeptide, putative, expressed"	Medtr1g013010.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214177.1.S1_at	A	A1TS	POPTR_0018s01160	POPTR_0018s01160 (11)	scaffold_18:1072355-1074712(+) (11)	NA	Q84MB2	Protein TIFY 8	AT4G32570.1	TIFY domain protein 8 	NA	NA	Medtr3g136210.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214178.1.S1_at	A	A1TS	POPTR_0018s01170	POPTR_0018s01170 (11)	scaffold_18:1086330-1087432(+) (11)	NA	Q39103	Gibberellin 3-beta-dioxygenase 1	AT1G15550.1	gibberellin 3-oxidase 1 	LOC_Os01g08220.1	"gibberellin 3-beta-dioxygenase 2-2, putative, expressed"	Medtr1g013080.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.214179.1.S1_at	A	A1TS	POPTR_0018s01190	POPTR_0018s01190 (11)	scaffold_18:1100969-1103465(-) (11)	NA	Q39111	Gibberellin 20 oxidase 2	AT1G52820.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr1g013100.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.214180.1.S1_at	A	A1TS	POPTR_0018s01210	POPTR_0018s01210 (11)	scaffold_18:1141298-1142468(-) (11)	NA	Q9LFM5	Flavin-containing monooxygenase YUCCA4	AT5G11320.1	Flavin-binding monooxygenase family protein 	LOC_Os01g53200.1	"flavin monooxygenase, putative, expressed"	Medtr1g013140.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214181.1.S1_at	A	A1TS	POPTR_0018s01220	POPTR_0018s01220 (11)	scaffold_18:1194217-1194528(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214182.1.S1_at	A	A1TS	POPTR_0018s01250	POPTR_0018s01250 (11)	scaffold_18:1228187-1228586(-) (11)	NA	NA	NA	AT4G29250.1	HXXXD-type acyl-transferase family protein 	LOC_Os03g53360.1	"transferase family protein, putative, expressed"	Medtr1g013170.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214183.1.S1_at	A	A1TS	POPTR_0018s01350	POPTR_0018s01350 (11)	scaffold_18:1313649-1314862(+) (11)	NA	Q9XI23	Boron transporter 4	AT1G15460.1	HCO3- transporter family 	LOC_Os01g08020.1	"boron transporter protein, putative, expressed"	Medtr3g136480.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214184.1.S1_at	A	A1TS	POPTR_0018s01360	POPTR_0018s01360 (11)	scaffold_18:1317982-1318776(-) (11)	NA	Q38998	Potassium channel AKT1	AT2G26650.1	K+ transporter 1 	LOC_Os01g45990.1	"potassium channel AKT1, putative, expressed"	Medtr8g119290.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.214185.1.S1_at	A	A1TS	POPTR_0018s01430	POPTR_0018s01430 (11)	scaffold_18:1365108-1366057(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214186.1.S1_at	A	A1TS	POPTR_0018s01440	POPTR_0018s01440 (11)	scaffold_18:1368887-1369204(-) (11)	NA	NA	NA	AT4G32440.3	Plant Tudor-like RNA-binding protein 	LOC_Os02g11000.2	"agenet domain containing protein, putative, expressed"	Medtr8g119470.1	ENT; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.214187.1.S1_at	A	A1TS	POPTR_0018s01460	POPTR_0018s01460 (10)	scaffold_18:1384837-1385890(+) (11)	NA	P0C1I7	Peptidyl-prolyl cis-trans isomerase cyp5	AT4G32420.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os02g10970.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr1g013450.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.214188.1.S1_at	A	A1TS	POPTR_0018s01480	POPTR_0018s01480 (11)	scaffold_18:1408060-1408977(-) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os12g41230.3	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr1g013510.1	"Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214189.1.S1_at	A	A1TS	POPTR_0018s01520	POPTR_0018s01520 (11)	scaffold_18:1440729-1441022(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21419.1.S1_at	A	A1TS	POPTR_0001s37770	POPTR_0001s37770 (11)	scaffold_1:36848597-36848917(-) (11)	NA	Q8VZK9	Cellulose synthase-like protein E1	AT1G55850.1	cellulose synthase like E1 	LOC_Os09g30130.1	"CSLE6 - cellulose synthase-like family E, expressed"	Medtr3g079580.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.214190.1.S1_at	A	A1TS	POPTR_0018s01530	POPTR_0018s01530 (11)	scaffold_18:1447137-1447487(+) (11)	NA	O24646	Transcription factor HY5	AT5G11260.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os02g10860.1	bZIP transcription factor domain containing protein	AC146793_14.1	"bZIP transcription factor, bZIP_1 AC146793.7 78592-81181 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.214191.1.S1_at	A	A1TS	POPTR_0018s01560	POPTR_0018s01560 (10)	scaffold_18:1466262-1466351(-) (10)	NA	P29518	"Protein brittle-1, chloroplastic/amyloplastic"	AT4G32400.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40050.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g136730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214192.1.S1_at	A	A1MS	POPTR_0018s01580	POPTR_0018s01580 (10)	scaffold_18:1482921-1483405(+) (10)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g60690.1	"pentatricopeptide, putative, expressed"	Medtr1g013720.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214193.1.S1_at	A	A1TS	POPTR_0018s01590	POPTR_0018s01590 (11)	scaffold_18:1489276-1489535(-) (11)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT4G32390.1	Nucleotide-sugar transporter family protein 	LOC_Os05g41480.2	"domain of unknown function, DUF250 domain containing protein, expressed"	Medtr3g136750.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214193.1.S1_x_at	A	A1TS	POPTR_0018s01590	POPTR_0018s01590 (11)	scaffold_18:1489018-1489535(-) (11)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT4G32390.1	Nucleotide-sugar transporter family protein 	LOC_Os05g41480.2	"domain of unknown function, DUF250 domain containing protein, expressed"	Medtr3g136750.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214194.1.S1_at	A	A1TS	POPTR_0018s01610	POPTR_0018s01610 (11)	scaffold_18:1503699-1504703(-) (11)	NA	Q9LW07	Probable polygalacturonase At3g15720	AT5G27530.1	Pectin lyase-like superfamily protein 	LOC_Os05g46510.1	"polygalacturonase, putative, expressed"	Medtr3g104790.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.214195.1.S1_at	A	A1TS	POPTR_0018s01650	POPTR_0018s01650 (11)	scaffold_18:1520852-1521208(-) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT1G68620.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g06830.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g013750.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.214196.1.S1_at	A	A1TS	POPTR_0018s01690	POPTR_0018s01690 (9)	scaffold_18:1549801-1550337(+) (11)	NA	P55939	Phospholipase D alpha 2	AT3G15730.1	phospholipase D alpha 1 	LOC_Os01g07760.2	"phospholipase D, putative, expressed"	Medtr2g126370.1	"C2; Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214197.1.S1_at	A	A1TS	POPTR_0018s01730	POPTR_0018s01730 (11)	scaffold_18:1574893-1574968(-) (11)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214197.1.S1_x_at	A	A1TS	POPTR_0018s01730	POPTR_0018s01730 (11)	scaffold_18:1574893-1575177(-) (11)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214198.1.S1_at	A	A1TS	POPTR_0018s01780	POPTR_0018s01780 (11)	scaffold_18:1626131-1628663(-) (11)	NA	NA	NA	AT3G19720.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g07880.1	"dynamin family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214199.1.S1_at	A	A1TS	POPTR_0018s01800	POPTR_0018s01800 (11)	scaffold_18:1641802-1642714(-) (11)	NA	C0LGH2	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	AT1G56130.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os08g10300.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr5g099260.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.214200.1.S1_at	A	A1TS	POPTR_0018s01820	POPTR_0018s01820 (11)	scaffold_18:1659711-1661756(+) (11)	NA	Q15B89	UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (Fragment)	AT4G32272.1	Nucleotide/sugar transporter family protein 	LOC_Os02g40030.1	"transporter family protein, putative, expressed"	Medtr1g014080.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214201.1.S1_at	A	A1TS	POPTR_0018s01850	POPTR_0018s01850 (11)	scaffold_18:1675011-1675466(-) (11)	NA	NA	NA	AT4G32190.1	Myosin heavy chain-related protein 	NA	NA	Medtr1g013980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214203.1.S1_at	A	A1TS	POPTR_0018s01910	POPTR_0018s01910 (11)	scaffold_18:1735486-1735955(-) (11)	NA	Q9SSQ4	Protein FAR1-RELATED SEQUENCE 6	AT1G52520.1	FAR1-related sequence 6 	NA	NA	Medtr2g034270.1	"FAR1; Heavy metal transport/detoxification protein; Zinc finger, SWIM-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214204.1.S1_at	A	A1TS	POPTR_0018s01920	POPTR_0018s01920 (10)	scaffold_18:1743969-1745019(+) (10)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT2G25320.1	TRAF-like family protein 	LOC_Os02g39990.1	expressed protein	Medtr3g137580.1	MATH 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.214205.1.S1_at	A	A1TS	POPTR_0018s01920	POPTR_0018s01920 (11)	scaffold_18:1754739-1755487(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT2G25320.1	TRAF-like family protein 	LOC_Os02g39990.1	expressed protein	Medtr3g137580.1	MATH 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.214206.1.S1_at	A	A1TS	POPTR_0018s01930	POPTR_0018s01930 (11)	scaffold_18:1757146-1757574(-) (11)	NA	Q3E7Q9	Probable glycosyltransferase At5g25310	AT5G25310.1	Exostosin family protein 	LOC_Os04g01930.1	"exostosin family protein, putative"	Medtr3g137610.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.214207.1.S1_at	A	A1TS	POPTR_0018s01940	POPTR_0018s01940 (11)	scaffold_18:1760404-1760906(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214208.1.S1_at	A	A1TS	POPTR_0018s01950	POPTR_0018s01950 (11)	scaffold_18:1765398-1765958(-) (11)	NA	Q9LFP3	Probable glycosyltransferase At5g11130	AT5G11130.1	Exostosin family protein 	LOC_Os02g39960.1	"exostosin family protein, putative"	Medtr8g121610.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.214209.1.S1_at	A	A1TS	POPTR_0018s01970	POPTR_0018s01970 (11)	scaffold_18:1784263-1785224(+) (11)	NA	Q5M7N9	Extended synaptotagmin-3	AT5G11100.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os04g55220.1	"C2 domain containing protein, expressed"	Medtr8g121700.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21421.1.S1_at	A	A1TS	POPTR_0001s21640	POPTR_0001s21640 (11)	scaffold_1:20171856-20172343(+) (11)	NA	NA	NA	AT1G11400.3	partner of Y14-MAGO 	LOC_Os03g15560.1	"wibg, putative, expressed"	Medtr2g007870.1	"Exon junction complex, Pym "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214210.1.S1_at	A	A1TS	POPTR_0018s01980	POPTR_0018s01980 (11)	scaffold_18:1786246-1786899(-) (11)	NA	NA	NA	AT2G28690.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.2	expressed protein	Medtr4g079030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214211.1.S1_at	A	A1TS	POPTR_0018s01990	POPTR_0018s01990 (11)	scaffold_18:1788961-1790872(-) (11)	NA	Q949Y3	Bifunctional purple acid phosphatase 26	AT5G34850.1	purple acid phosphatase 26 	LOC_Os06g43640.2	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.214212.1.S1_at	A	A1TS	POPTR_0018s02030	POPTR_0018s02030 (11)	scaffold_18:1818326-1819430(-) (11)	NA	Q96GN5	Cell division cycle-associated 7-like protein	AT1G67780.1	Zinc-finger domain of monoamine-oxidase A repressor R1 protein 	LOC_Os05g23530.4	expressed protein	Medtr4g128660.1	protein binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214213.1.S1_at	A	A1TS	POPTR_0018s02040	POPTR_0018s02040 (11)	scaffold_18:1827968-1828958(+) (11)	NA	B3E1P0	Cysteinyl-tRNA synthetase	AT2G31170.1	"Cysteinyl-tRNA synthetase, class Ia family protein "	LOC_Os09g38420.1	"cysteinyl-tRNA synthetase, putative, expressed"	Medtr3g137730.1	Rossmann-like alpha/beta/alpha sandwich fold 	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006423|cysteinyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0004817|cysteine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.214214.1.S1_at	A	A1TS	POPTR_0018s02050	POPTR_0018s02050 (11)	scaffold_18:1829481-1830214(-) (11)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.2	glucuronidase 3 	LOC_Os06g08090.2	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.214215.1.S1_at	A	A1TS	POPTR_0018s02060	POPTR_0018s02060 (9)	scaffold_18:1834755-1835784(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214216.1.S1_at	A	A1TS	POPTR_0018s02090	POPTR_0018s02090 (11)	scaffold_18:1869145-1869862(+) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr2g126840.3	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214217.1.S1_at	A	A1TS	POPTR_0018s02110	POPTR_0018s02110 (11)	scaffold_18:1875952-1876790(-) (11)	NA	NA	NA	AT2G20142.1	Toll-Interleukin-Resistance (TIR) domain family protein 	NA	NA	Medtr3g106980.1	"heavy-metal-associated domain-containing protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214218.1.S1_at	A	A1TS	POPTR_0018s02120	POPTR_0018s02120 (11)	scaffold_18:1882998-1883458(-) (11)	NA	Q32PZ3	Protein unc-45 homolog A	AT2G25290.3	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein 	LOC_Os09g38390.1	"octicosapeptide/Phox/Bem1p, putative, expressed"	Medtr8g147450.1	Octicosapeptide/Phox/Bem1p; Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214219.1.S1_at	A	A1TS	POPTR_0018s02130	POPTR_0018s02130 (11)	scaffold_18:1889374-1891567(-) (11)	NA	Q6P6Q9	"Calcium uptake protein 1, mitochondrial"	AT4G32060.1	calcium-binding EF hand family protein 	LOC_Os02g39950.1	"EF hand family protein, putative, expressed"	Medtr3g137740.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214221.1.S1_at	A	A1TS	POPTR_0018s02200	POPTR_0018s02200 (11)	scaffold_18:1943546-1945463(-) (11)	NA	Q640K1	Neurochondrin	AT4G32050.1	neurochondrin family protein 	LOC_Os02g55530.1	"neurochondrin family protein, putative, expressed"	Medtr3g137890.1	Neurochondrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214222.1.S1_at	A	A1TS	POPTR_0018s02220	POPTR_0018s02220 (11)	scaffold_18:1980316-1980351(-) (11)	NA	Q3U0M1	Trafficking protein particle complex subunit 9	AT5G11040.1	TRS120 	LOC_Os04g42370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214222.1.S1_s_at	A	A1TS	POPTR_0018s02220	POPTR_0018s02220 (11)	scaffold_18:1979923-1980124(-) (11)	NA	Q3U0M1	Trafficking protein particle complex subunit 9	AT5G11040.1	TRS120 	LOC_Os04g42370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214223.1.S1_at	A	A1TS	POPTR_0018s02220	POPTR_0018s02220 (10)	scaffold_18:1981332-1981902(-) (11)	NA	Q3U0M1	Trafficking protein particle complex subunit 9	AT5G11040.1	TRS120 	LOC_Os04g42370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214224.1.S1_at	A	A1TS	POPTR_0018s02220	POPTR_0018s02220 (11)	scaffold_18:1983212-1983477(-) (11)	NA	Q3U0M1	Trafficking protein particle complex subunit 9	AT5G11040.1	TRS120 	LOC_Os04g42370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214224.1.S1_x_at	A	A1TS	POPTR_0018s02220	POPTR_0018s02220 (11)	scaffold_18:1983201-1983473(-) (11)	NA	Q3U0M1	Trafficking protein particle complex subunit 9	AT5G11040.1	TRS120 	LOC_Os04g42370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214225.1.S1_at	A	A1TS	POPTR_0018s02220	POPTR_0018s02220 (11)	scaffold_18:1985514-1985849(-) (11)	NA	Q3U0M1	Trafficking protein particle complex subunit 9	AT5G11040.1	TRS120 	LOC_Os04g42370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214226.1.S1_at	A	A1TS	POPTR_0018s02270	POPTR_0018s02270 (11)	scaffold_18:2016196-2017611(-) (11)	NA	NA	NA	AT2G18950.1	homogentisate phytyltransferase 1 	LOC_Os06g44840.1	"prenyltransferase, putative, expressed"	Medtr8g129290.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.214227.1.S1_at	A	A1TS	POPTR_0018s02290	POPTR_0018s02290 (11)	scaffold_18:2044288-2044597(+) (11)	NA	NA	NA	AT5G11000.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr3g138030.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214228.1.S1_at	A	A1TS	POPTR_0018s02310	POPTR_0018s02310 (11)	scaffold_18:2063972-2064294(+) (11)	NA	Q8W487	"Uncharacterized protein At2g39795, mitochondrial"	AT4G31930.1	Mitochondrial glycoprotein family protein 	LOC_Os09g38500.2	"mitochondrial glycoprotein, putative, expressed"	Medtr4g022510.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
PtpAffx.214228.1.S1_s_at	A	A1TS	POPTR_0018s02310	POPTR_0018s02310 (11)	scaffold_18:2062900-2063896(+) (11)	NA	Q8W487	"Uncharacterized protein At2g39795, mitochondrial"	AT4G31930.1	Mitochondrial glycoprotein family protein 	LOC_Os09g38500.2	"mitochondrial glycoprotein, putative, expressed"	Medtr4g022510.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
PtpAffx.214230.1.S1_at	A	A1MS	POPTR_0018s02340	POPTR_0018s02340 (11)	scaffold_18:2089261-2089708(-) (11)	NA	NA	NA	AT4G31910.1	HXXXD-type acyl-transferase family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214231.1.S1_s_at	A	A1TS	POPTR_0018s02350	POPTR_0018s02350 (11)	scaffold_18:2095098-2096549(-) (11)	NA	Q9S775	CHD3-type chromatin-remodeling factor PICKLE	AT2G25170.1	chromatin remodeling factor CHD3 (PICKLE) 	LOC_Os06g08480.1	"CHD3-type chromatin-remodeling factor PICKLE, putative, expressed"	Medtr3g138080.1	"Helicase, C-terminal; Homeodomain-like; Protein of unknown function DUF1087 "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.214232.1.S1_s_at	A	A1TS	POPTR_0018s02360	POPTR_0018s02360 (11)	scaffold_18:2118959-2119040(-) (11)	NA	Q9VGY6	DOMON domain-containing protein CG14681	AT5G54830.1	DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein 	LOC_Os09g38520.1	"DOMON domain containing protein, expressed"	AC233651_15.1	DOMON; Cytochrome b561 / ferric reductase transmembrane AC233651.1 46198-48399 H EGN_Mt090430 200	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006548|histidine catabolic process	GO:0004500|dopamine beta-monooxygenase activity	NA
PtpAffx.214233.1.S1_at	A	A1TS	POPTR_0018s02380	POPTR_0018s02380 (11)	scaffold_18:2139318-2139848(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214234.1.S1_at	A	A1TA	POPTR_0018s02420	POPTR_0018s02420 (10)	scaffold_18:2197493-2197985(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214235.1.S1_s_at	A	A2TS	POPTR_0018s02440	POPTR_0018s02450 (11)//POPTR_0018s02440 (11)	scaffold_18:2206779-2207341(+) (11)//scaffold_18:2223050-2223624(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g36090.1	"receptor kinase, putative, expressed"	Medtr8g078000.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.214237.1.S1_at	A	A1TS	POPTR_0018s02480	POPTR_0018s02480 (11)	scaffold_18:2284642-2285277(+) (11)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os09g25060.1	"OsWRKY76 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g016710.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.214238.1.S1_at	A	A1MS	POPTR_0018s02490	POPTR_0018s02490 (9)	scaffold_18:2288034-2289142(-) (9)	NA	Q6ZCX3	Formin-like protein 6	AT2G25050.1	Actin-binding FH2 (Formin Homology) protein 	LOC_Os02g55170.1	"formin-like protein 13, putative"	Medtr1g016730.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214239.1.S1_at	A	A1MS	POPTR_0018s02490	POPTR_0018s02490 (11)	scaffold_18:2293757-2294397(-) (11)	NA	Q6ZCX3	Formin-like protein 6	AT2G25050.1	Actin-binding FH2 (Formin Homology) protein 	LOC_Os02g55170.1	"formin-like protein 13, putative"	Medtr1g016730.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214240.1.S1_at	A	A1TS	POPTR_0018s02500	POPTR_0018s02500 (11)	scaffold_18:2302622-2303092(-) (11)	NA	Q75HC2	Protein argonaute 7	AT1G69440.1	Argonaute family protein 	LOC_Os03g33650.1	"AGO7, putative, expressed"	Medtr5g045600.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214241.1.S1_at	A	A1TS	POPTR_0018s02510	POPTR_0018s02510 (11)	scaffold_18:2307053-2307987(+) (11)	NA	NA	NA	AT4G31805.1	WRKY family transcription factor 	LOC_Os06g43990.1	expressed protein	Medtr3g138280.1	"Glycoside hydrolase, family 22 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214242.1.S1_at	A	A1TS	POPTR_0018s02530	POPTR_0018s02530 (11)	scaffold_18:2314200-2315007(+) (11)//scaffold_833:2002-6710(+) (9)	POPTR_0833s00010 (8)	NA	NA	AT3G23780.2	nuclear RNA polymerase D2A 	NA	NA	Medtr3g138340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214243.1.S1_at	A	A1TS	POPTR_0018s02550	POPTR_0018s02550 (11)	scaffold_18:2327109-2328106(+) (11)	NA	P59583	Probable WRKY transcription factor 32	AT4G30935.1	WRKY DNA-binding protein 32 	LOC_Os08g17400.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr8g145380.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.214244.1.S1_s_at	A	A1TS	POPTR_0018s02580	POPTR_0018s02580 (9)	scaffold_18:2339388-2339722(-) (11)	NA	Q54K50	Phospholipase D Y	NA	NA	LOC_Os06g44060.2	"phospholipase D. Active site motif family protein, expressed"	Medtr3g138360.1	Phospholipase D/Transphosphatidylase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.214245.1.S1_a_at	A	A1TS	POPTR_0018s02630	POPTR_0018s02630 (11)	scaffold_18:2379268-2379329(+) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT2G25060.1	early nodulin-like protein 14 	LOC_Os02g06670.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g138410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.214247.1.S1_at	A	A1TS	POPTR_0018s02660	POPTR_0018s02660 (9)	scaffold_18:2393573-2394056(-) (11)	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.214248.1.S1_at	A	A1TS	POPTR_0018s02690	POPTR_0018s02690 (11)	scaffold_18:2416881-2417434(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214250.1.S1_at	A	A1TS	POPTR_0018s02720	POPTR_0018s02720 (11)	scaffold_18:2432389-2432997(+) (11)	NA	NA	NA	AT5G10820.1	Major facilitator superfamily protein 	LOC_Os09g25560.1	"BT1 family protein, putative, expressed"	Medtr1g017050.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214251.1.S1_at	A	A1TS	POPTR_0018s02740	POPTR_0018s02740 (10)	scaffold_18:2444859-2445925(+) (10)	NA	Q5R7X2	U2-associated protein SR140	AT5G25060.1	RNA recognition motif (RRM)-containing protein 	LOC_Os02g08360.1	"RNA recognition motif, putative, expressed"	Medtr8g083970.1	"SWAP/Surp; DNA-binding SAP; Regulation of nuclear pre-mRNA protein; ENTH/VHS; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.214252.1.S1_at	A	A1TS	POPTR_0018s02750	POPTR_0018s02750 (11)	scaffold_18:2447417-2448038(-) (11)	NA	NA	NA	AT5G25050.1	Major facilitator superfamily protein 	LOC_Os06g08750.1	"integral membrane transporter family protein, putative, expressed"	Medtr1g017050.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214253.1.S1_at	A	A1TS	POPTR_0018s02790	POPTR_0018s02790 (11)	scaffold_18:2468794-2469788(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214255.1.S1_at	A	A1TS	POPTR_0018s02840	POPTR_0018s02840 (11)	scaffold_18:2503301-2503695(+) (11)	NA	Q6K687	Zinc finger CCCH domain-containing protein 18	AT2G24830.1	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein 	LOC_Os02g55000.1	"zinc finger CCCH-type with G patch domain-containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.214256.1.S1_at	A	A1MS	POPTR_0018s02860	POPTR_0018s02860 (10)	scaffold_18:2518608-2519129(+) (10)	NA	Q9ZVR5	Putative F-box protein PP2-B2	AT2G02250.1	phloem protein 2-B2 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr1g092930.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214257.1.S1_at	A	A1TS	POPTR_0018s02870	POPTR_0018s02870 (10)	scaffold_18:2520751-2521590(+) (11)	NA	Q3E6P4	F-box protein At2g02240	AT2G02240.1	F-box family protein 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr1g092880.1	"Cyclin-like F-box; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214258.1.S1_at	A	A1TS	POPTR_0018s02880	POPTR_0018s02880 (10)	scaffold_18:2527282-2528368(+) (10)	NA	Q3E6P4	F-box protein At2g02240	AT2G02240.1	F-box family protein 	LOC_Os02g56840.1	"OsFBX70 - F-box domain containing protein, expressed"	Medtr1g092880.1	"Cyclin-like F-box; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214259.1.S1_at	A	A1TS	POPTR_0018s02920	POPTR_0018s02920 (11)	scaffold_18:2542036-2542962(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214260.1.S1_at	A	A1TS	POPTR_0018s02930	POPTR_0018s02930 (11)	scaffold_18:2543424-2545373(-) (11)	NA	Q94K01	Lariat debranching enzyme	AT4G31770.1	debranching enzyme 1 	LOC_Os03g51540.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr3g138550.1	"Metallophosphoesterase; Lariat debranching enzyme, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.214261.1.S1_s_at	A	A1TS	POPTR_0018s02970	POPTR_0018s02970 (11)	scaffold_18:2565014-2565191(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214263.1.S1_at	A	A1TS	POPTR_0018s03040	POPTR_0018s03040 (11)	scaffold_18:2715678-2716679(+) (11)	NA	Q8L828	Coatomer subunit beta'-3	AT3G15980.5	"Coatomer, beta' subunit "	LOC_Os06g05180.1	"coatomer subunit beta, putative, expressed"	AC234703_16.1	WD40 repeat AC234703.1 99404-102475 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214264.1.S1_at	A	A1TS	POPTR_0018s03050	POPTR_0018s03050 (11)	scaffold_18:2725718-2725989(-) (11)	NA	NA	NA	AT5G10750.1	Protein of unknown function (DUF1336) 	LOC_Os06g48320.1	"EDR2, putative, expressed"	Medtr3g138580.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214265.1.S1_at	A	A1TS	POPTR_0018s03130	POPTR_0018s03130 (11)	scaffold_18:2776366-2776863(-) (11)	NA	NA	NA	AT5G57685.1	glutamine dumper 3 	LOC_Os08g34700.1	"GDU1, putative, expressed"	Medtr3g138690.1	GDU1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214266.1.S1_s_at	A	A4TS	POPTR_0003s02290	POPTR_0005s01340 (11)//POPTR_0018s03140 (11)//POPTR_0005s01120 (11)//POPTR_0003s02290 (11)	scaffold_18:2794456-2794645(-) (11)//scaffold_3:2372380-2372569(-) (11)//scaffold_5:458139-458328(-) (11)//scaffold_5:647788-647967(-) (11)//scaffold_5:689937-690126(-) (11)//scaffold_5:739879-740067(-) (11)//scaffold_5:893625-893814(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028060.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.214267.1.S1_at	A	A1TS	POPTR_0018s03170	POPTR_0018s03170 (11)	scaffold_18:2809290-2809958(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.214268.1.S1_at	A	A1MS	POPTR_0018s03180	POPTR_0018s03180 (9)	scaffold_18:2812483-2813291(+) (10)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g26160.1	"glutamate receptor, putative, expressed"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214269.1.S1_s_at	A	A3TS	POPTR_0017s09380	POPTR_0018s03190 (9)//POPTR_0017s09380 (9)//POPTR_1366s00200 (9)	scaffold_1366:656-1319(+) (11)//scaffold_17:7993124-7993172(+) (9)//scaffold_18:2820265-2820928(+) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.214270.1.S1_s_at	A	A3TS	POPTR_0018s00230	POPTR_0018s00230 (11)//POPTR_0018s03210 (11)//POPTR_0017s09420 (9)	scaffold_17:8020763-8020983(+) (11)//scaffold_18:30786-31006(+) (11)//scaffold_18:2835447-2835667(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.214273.1.S1_s_at	A	A2TS	POPTR_0017s09280	POPTR_0017s09390 (10)//POPTR_0017s09280 (10)	scaffold_17:7918809-7918853(+) (10)//scaffold_17:8009006-8009050(+) (10)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.214274.1.S1_at	A	A1TS	POPTR_0017s09290	POPTR_0017s09290 (11)	scaffold_17:7921556-7921904(+) (11)//scaffold_17:8011785-8012131(+) (11)	NA	O81776	Glutamate receptor 2.4	AT4G31710.1	glutamate receptor 2.4 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214275.1.S1_at	A	A2TS	POPTR_0017s09300	POPTR_0017s09300 (11)//POPTR_0017s09400 (9)	scaffold_17:7922029-7922604(+) (11)//scaffold_17:8012256-8012835(+) (11)	NA	O04660	Glutamate receptor 2.1	AT5G27100.1	glutamate receptor 2.1 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214278.1.S1_at	A	A1TS	POPTR_0017s09430	POPTR_0017s09430 (9)	scaffold_17:8031692-8031817(+) (9)//scaffold_18:2881784-2881918(+) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.214279.1.S1_x_at	A	A1TS	POPTR_0018s03300	POPTR_0018s03300 (11)	scaffold_18:2919770-2920701(+) (11)	NA	Q9SHV1	Glutamate receptor 2.2	AT5G11180.1	glutamate receptor 2.6 	LOC_Os09g26160.1	"glutamate receptor, putative, expressed"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0003676|nucleic acid binding||GO:0004970|ionotropic glutamate receptor activity||GO:0008270|zinc ion binding||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.214280.1.S1_at	A	A1TS	POPTR_0018s03310	POPTR_0018s03310 (11)	scaffold_18:2927200-2927838(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.214281.1.S1_at	A	A1TS	POPTR_0018s03320	POPTR_0018s03320 (11)	scaffold_18:2928689-2929627(-) (11)	NA	Q3S4A7	Histidine kinase 5	AT5G10720.1	histidine kinase 5 	LOC_Os06g44410.1	"histidine kinase, putative, expressed"	Medtr1g016180.1	Response regulator receiver; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.214282.1.S1_at	A	A1TS	POPTR_0018s03330	POPTR_0018s03330 (11)	scaffold_18:2945432-2945760(+) (11)	NA	Q7XI08	Probable E3 ubiquitin-protein ligase XBOS34	AT3G23280.1	XB3 ortholog 5 in Arabidopsis thaliana 	LOC_Os07g26490.1	"ankyrin repeat domain containing protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.214283.1.S1_at	A	A1TS	POPTR_0018s03350	POPTR_0018s03350 (11)	scaffold_18:2954928-2957638(+) (11)	NA	Q9SJA1	Ubiquitin carboxyl-terminal hydrolase 19	AT2G24640.1	ubiquitin-specific protease 19 	LOC_Os06g44380.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.214284.1.S1_at	A	A1TS	POPTR_0018s03370	POPTR_0018s03370 (11)	scaffold_18:2977496-2977908(+) (11)	NA	Q9SB75	Probable xyloglucan glycosyltransferase 5	AT4G31590.1	Cellulose-synthase-like C5 	LOC_Os08g15420.1	"CSLC3 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214285.1.S1_at	A	A1TS	POPTR_0018s03390	POPTR_0018s03390 (11)	scaffold_18:2991553-2992488(-) (11)	NA	P84104	Serine/arginine-rich splicing factor 3	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.8	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.214286.1.S1_s_at	A	A1TS	POPTR_0018s03400	POPTR_0018s03400 (11)	scaffold_18:2996941-2997232(-) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os06g39070.1	"UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214287.1.S1_at	A	A1TS	POPTR_0018s03410	POPTR_0018s03410 (11)	scaffold_18:3004097-3004695(-) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os06g39070.1	"UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214288.1.S1_at	A	A1TS	POPTR_0018s03420	POPTR_0018s03420 (11)	scaffold_18:3007056-3007523(+) (11)	NA	Q9LH76	Probable rhamnose biosynthetic enzyme 3	AT3G14790.1	rhamnose biosynthesis 3 	LOC_Os03g17000.3	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214289.1.S1_at	A	A1TS	POPTR_0018s03440	POPTR_0018s03440 (11)	scaffold_18:3015392-3015448(-) (11)	NA	NA	NA	AT4G31570.1	CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). 	LOC_Os02g05490.1	expressed protein	Medtr1g010620.1	Prefoldin 	GO:0016032|viral reproduction	NA	NA
PtpAffx.214290.1.S1_at	A	A1TS	POPTR_0018s03460	POPTR_0018s03460 (11)	scaffold_18:3041532-3042129(+) (11)	NA	O54922	Exocyst complex component 7	AT4G31540.1	exocyst subunit exo70 family protein G1 	LOC_Os02g05620.1	"ATEXO70G1, putative, expressed"	Medtr1g010470.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.214291.1.S1_at	A	A1TS	POPTR_0018s03470	POPTR_0018s03470 (11)	scaffold_18:3046071-3046408(+) (11)	NA	NA	NA	AT1G13480.1	Protein of unknown function (DUF1262) 	LOC_Os08g31880.1	conserved hypothetical protein	Medtr5g036800.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214292.1.S1_at	A	A1TS	POPTR_0018s03490	POPTR_0018s03490 (11)	scaffold_18:3060166-3060890(-) (11)	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.214293.1.S1_at	A	A1TS	POPTR_0018s03510	POPTR_0018s03510 (11)	scaffold_18:3066717-3067292(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214295.1.S1_at	A	A1TS	POPTR_0018s03540	POPTR_0018s03540 (11)	scaffold_18:3077762-3077799(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214295.1.S1_x_at	A	A1TS	POPTR_0018s03540	POPTR_0018s03540 (11)	scaffold_18:3068095-3077799(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214296.1.S1_x_at	A	A2TS	POPTR_0018s03550	POPTR_0642s00210 (11)//POPTR_0018s03550 (11)	scaffold_18:3084172-3084336(-) (11)//scaffold_642:930-4420(-) (11)	NA	NA	NA	AT1G61566.1	ralf-like 9 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214297.1.S1_at	A	A1TS	POPTR_0018s03580	POPTR_0018s03580 (11)	scaffold_18:3097163-3098257(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214298.1.S1_at	A	A1TS	POPTR_0018s03600	POPTR_0018s03600 (11)	scaffold_18:3106953-3107333(-) (11)	NA	P35792	Pathogenesis-related protein PRB1-2	AT4G31470.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr8g128380.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214299.1.S1_at	A	A1TS	POPTR_0018s03630	POPTR_0018s03630 (11)	scaffold_18:3114373-3115821(-) (11)	NA	NA	NA	AT2G24490.2	replicon protein A2 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214300.1.S1_at	A	A1TS	POPTR_0018s03640	POPTR_0018s03640 (10)	scaffold_18:3116541-3117529(+) (10)	NA	Q8RWG1	"Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic"	AT4G31390.2	Protein kinase superfamily protein 	LOC_Os11g11000.3	"ELMO/CED-12 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214301.1.S1_at	A	A1TS	POPTR_0018s03650	POPTR_0018s03650 (11)	scaffold_18:3121534-3123091(+) (11)	NA	Q9Y450	HBS1-like protein	AT5G10630.2	Translation elongation factor EF1A/initiation factor IF2gamma family protein 	LOC_Os01g02720.2	"elongation factor Tu, putative, expressed"	Medtr4g136490.2	"Zinc finger, RanBP2-type; Translation factor; EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal "	NA	GO:0008270|zinc ion binding||GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0005622|intracellular
PtpAffx.214304.1.S1_at	A	A1TS	POPTR_0018s06360	POPTR_0018s06360 (10)	scaffold_18:6173621-6173908(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214305.1.S1_at	A	A1TS	POPTR_0018s06350	POPTR_0018s06350 (11)	scaffold_18:6154786-6155478(-) (11)	NA	Q5ZMS6	Tudor domain-containing protein 3	AT5G19950.2	Domain of unknown function (DUF1767) 	LOC_Os01g08280.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214306.1.S1_at	A	A1TS	POPTR_0018s06350	POPTR_0018s06350 (11)	scaffold_18:6151978-6152739(-) (11)	NA	Q5ZMS6	Tudor domain-containing protein 3	AT5G19950.2	Domain of unknown function (DUF1767) 	LOC_Os01g08280.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214307.1.S1_at	A	A1TS	POPTR_0018s06310	POPTR_0018s06310 (9)	scaffold_18:6115877-6116442(-) (9)	NA	NA	NA	AT1G34070.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g40250.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.214309.1.S1_at	A	A1TS	POPTR_0018s06280	POPTR_0018s06280 (11)	scaffold_18:6024027-6024605(+) (11)	NA	O75165	DnaJ homolog subfamily C member 13	AT2G26890.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g42439.1	"heat shock protein DnaJ, putative, expressed"	Medtr8g118640.1	"GRV2 ; binding, putative "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.214310.1.S1_at	A	A1TS	POPTR_0018s06250	POPTR_0018s06250 (11)	scaffold_18:5979058-5979656(+) (11)//scaffold_18:13004656-13005095(+) (9)	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT3G24330.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g36940.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr6g030630.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.214311.1.S1_at	A	A1MS	POPTR_0018s12500	POPTR_0018s12500 (9)	scaffold_18:12995118-12995443(+) (9)	POPTR_0018s06240 (8)	Q8TFG7	tRNA (guanine-N(1)-)-methyltransferase	AT3G56120.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g39370.1	"tRNA methyltransferase, putative"	Medtr2g095630.1	Protein of unknown function Met10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214312.1.S1_at	A	A1TS	POPTR_0018s06220	POPTR_0018s06220 (9)	scaffold_18:5942829-5946726(+) (10)	NA	NA	NA	AT4G13400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g48230.1	expressed protein	Medtr1g083900.1	hypothetical protein 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.214314.1.S1_s_at	A	A1TS	POPTR_0018s06170	POPTR_0018s06170 (11)	scaffold_18:5826278-5826781(-) (11)	NA	Q8RXE7	Probable ADP-ribosylation factor GTPase-activating protein AGD14	AT4G13350.2	NSP (nuclear shuttle protein)-interacting GTPase 	LOC_Os02g11820.2	"GTPase-activating protein, putative, expressed"	Medtr4g158580.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	GO:0005622|intracellular
PtpAffx.214315.1.S1_at	A	A1TS	POPTR_0018s06160	POPTR_0018s06160 (11)	scaffold_18:5809787-5811999(+) (11)	NA	Q54UF8	Probable serine incorporator	AT3G24460.1	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os04g42720.1	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr4g158590.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.214316.1.S1_at	A	A1TS	POPTR_0018s06150	POPTR_0018s06150 (10)	scaffold_18:5788462-5788884(+) (11)	NA	Q9T0K5	Leucine-rich repeat extensin-like protein 3	AT4G13340.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g41120.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr6g102080.1	Leucine-rich repeat 	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall||GO:0005515|protein binding	NA
PtpAffx.214317.1.S1_at	A	A1TS	POPTR_0018s06140	POPTR_0018s06140 (11)	scaffold_18:5776737-5777190(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214318.1.S1_at	A	A1TS	POPTR_0018s06110	POPTR_0018s06110 (11)	scaffold_18:5760578-5761129(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214319.1.S1_at	A	A1TS	POPTR_0018s06100	POPTR_0018s06100 (11)	scaffold_18:5759684-5760272(+) (11)	NA	Q42510	Pattern formation protein EMB30	AT5G19610.1	GNOM-like 2 	LOC_Os02g22090.1	"pattern formation protein EMB30, putative, expressed"	Medtr6g101970.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.214320.1.S1_at	A	A1TS	POPTR_0018s06070	POPTR_0018s06070 (11)	scaffold_18:5740286-5740989(-) (11)	NA	NA	NA	AT5G03190.2	conserved peptide upstream open reading frame 47 	NA	NA	Medtr7g121400.1	"CPuORF47, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214321.1.S1_at	A	A1TS	POPTR_0018s06045	POPTR_0018s06045 (11)	scaffold_18:5683666-5684306(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214322.1.S1_at	A	A1MS	POPTR_0018s06030	POPTR_0018s06030 (11)	scaffold_18:5560393-5577325(+) (9)//scaffold_18:5611319-5611553(+) (11)//scaffold_18:5631320-5631539(+) (10)//scaffold_18:5646202-5646432(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214325.1.S1_at	A	A1MS	POPTR_0018s05960	POPTR_0018s05960 (10)	scaffold_18:5590226-5590267(+) (10)	POPTR_0018s05910 (7)	NA	NA	AT3G22440.1	FRIGIDA-like protein 	LOC_Os01g08580.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214327.1.S1_s_at	A	A6TS	POPTR_0018s05925	POPTR_0018s06010 (11)//POPTR_0018s05940 (11)//POPTR_0018s05925 (11)//POPTR_0018s05990 (11)//POPTR_0018s06020 (11)//POPTR_0018s06000 (9)	scaffold_18:5558269-5558458(-) (11)//scaffold_18:5575132-5575321(-) (11)//scaffold_18:5608869-5609058(-) (11)//scaffold_18:5620500-5620689(-) (11)//scaffold_18:5629814-5630003(-) (11)//scaffold_18:5643691-5643880(-) (11)	NA	NA	NA	AT1G03670.1	ankyrin repeat family protein 	LOC_Os05g35310.1	"ankyrin repeat family protein, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214328.1.S1_at	A	A1MS	POPTR_0018s05910	POPTR_0018s05910 (9)	scaffold_18:5537976-5538538(+) (9)	NA	NA	NA	AT3G22440.1	FRIGIDA-like protein 	LOC_Os07g07680.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214329.1.S1_at	A	A1TS	POPTR_0018s05870	POPTR_0018s05870 (11)	scaffold_18:5509186-5510167(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214330.1.S1_at	A	A1TS	POPTR_0018s05840	POPTR_0018s05840 (11)	scaffold_18:5468159-5468661(+) (11)	NA	NA	NA	AT3G29300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; Has 451 Blast hits to 349 proteins in 91 species: Archae - 0; Bacteria - 85; Metazoa - 81; Fungi - 88; Plants - 18; Viruses - 1; Other Eukaryotes - 178 (source: NCBI BLink). 	NA	NA	AC235754_10.1	hypothetical protein AC235754.1 36951-34786 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214331.1.S1_at	A	A1TS	POPTR_0018s05830	POPTR_0018s05830 (11)	scaffold_18:5463775-5465536(+) (11)	NA	NA	NA	AT4G32350.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os06g47250.1	"DUF292 domain containing protein, expressed"	Medtr4g158790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214332.1.S1_at	A	A1TS	POPTR_0018s05790	POPTR_0018s05790 (11)	scaffold_18:5424588-5424633(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g026150.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214332.1.S1_x_at	A	A1TS	POPTR_0018s05790	POPTR_0018s05790 (11)	scaffold_18:5424448-5424633(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g026150.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214333.1.S1_at	A	A1TS	POPTR_0018s05770	POPTR_0018s05770 (11)	scaffold_18:5354844-5355447(-) (11)	NA	Q9LV52	Heat stress transcription factor C-1	AT3G24520.1	heat shock transcription factor  C1 	LOC_Os01g43590.2	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.214335.1.S1_at	A	A1TS	POPTR_0018s08740	POPTR_0018s08740 (11)	scaffold_18:9677902-9678480(-) (11)	NA	NA	NA	AT5G19650.1	ovate family protein 8 	LOC_Os01g12690.1	"plant-specific domain TIGR01568 family protein, expressed"	Medtr4g158820.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214338.1.S1_at	A	A1TS	POPTR_0018s08810	POPTR_0018s08810 (11)	scaffold_18:9733055-9733794(-) (11)	NA	Q9WTZ3	Membrane-bound transcription factor site-1 protease	AT5G19660.1	SITE-1 protease 	LOC_Os06g06810.1	"OsSub49 - Putative Subtilisin homologue, expressed"	Medtr6g099740.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.214339.1.S1_at	A	A1MS	POPTR_0018s08820	POPTR_0018s08820 (9)	scaffold_18:9747296-9748037(+) (9)	NA	B3CLY6	tRNA(Ile)-lysidine synthase	AT3G24560.2	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g16670.1	"ATP-binding domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214340.1.S1_at	A	A1TS	POPTR_0018s08890	POPTR_0018s08890 (11)	scaffold_18:9800654-9801069(-) (11)	NA	NA	NA	AT3G24630.1	unknown protein; Has 5348 Blast hits to 3182 proteins in 353 species: Archae - 0; Bacteria - 481; Metazoa - 1959; Fungi - 405; Plants - 180; Viruses - 10; Other Eukaryotes - 2313 (source: NCBI BLink). 	LOC_Os01g12840.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214341.1.S1_at	A	A1TS	POPTR_0018s08900	POPTR_0018s08900 (11)	scaffold_18:9816701-9816970(+) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT3G24620.1	RHO guanyl-nucleotide exchange factor 8 	LOC_Os05g48640.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr6g099460.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.214342.1.S1_at	A	A1TS	POPTR_0018s08900	POPTR_0018s08900 (11)	scaffold_18:9818499-9819035(+) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT3G24620.1	RHO guanyl-nucleotide exchange factor 8 	LOC_Os05g48640.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr6g099460.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.214343.1.S1_at	A	A1TS	POPTR_0018s08960	POPTR_0018s08960 (10)	scaffold_18:9862882-9866528(-) (10)	NA	Q95QD7	Protein lin-54	AT4G29000.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os01g55580.2	"tesmin/TSO1-like CXC domain containing protein, expressed"	AC225507_24.1	"Tesmin/TSO1-like, CXC AC225507.11 107125-103243 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214344.1.S1_at	A	A1TS	POPTR_0018s08990	POPTR_0018s08990 (11)	scaffold_18:9887157-9888147(+) (11)	NA	Q9FYG3	Probable plastidic glucose transporter 2	AT1G67300.1	Major facilitator superfamily protein 	LOC_Os02g17500.3	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.214348.1.S1_at	A	A1TS	POPTR_0018s09040	POPTR_0018s09040 (11)	scaffold_18:9921346-9922998(-) (11)	NA	Q8GUG9	U-box domain-containing protein 11	AT3G06880.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g12930.1	"U-box domain containing protein, expressed"	Medtr1g112060.1	U box; Armadillo-like helical; 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.214349.1.S1_at	A	A1TS	POPTR_0018s09050	POPTR_0018s09050 (11)	scaffold_18:9928244-9928797(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g12930.1	"U-box domain containing protein, expressed"	Medtr1g112050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214350.1.S1_at	A	A1TS	POPTR_0018s09090	POPTR_0018s09090 (11)	scaffold_18:9992698-9993028(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214350.1.S1_s_at	A	A1TS	POPTR_0018s09090	POPTR_0018s09090 (11)	scaffold_18:9992758-9993096(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214351.1.S1_at	A	A1TS	POPTR_0018s09100	POPTR_0018s09100 (11)	scaffold_18:10008504-10009721(+) (11)	NA	NA	NA	AT2G20080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr4g159450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214352.1.S1_at	A	A1TS	POPTR_0018s09110	POPTR_0018s09110 (11)	scaffold_18:10021426-10021987(+) (11)	NA	NA	NA	AT5G19580.1	glyoxal oxidase-related protein 	LOC_Os01g48540.1	"glyoxal oxidase-related, putative, expressed"	Medtr4g159430.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214353.1.S1_at	A	A1TS	POPTR_0018s09150	POPTR_0018s09150 (11)	scaffold_18:10041569-10042070(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214354.1.S1_at	A	A1TS	POPTR_0018s09160	POPTR_0018s09160 (10)	scaffold_18:10046348-10048064(-) (10)	NA	Q9U2R0	Probable methyltransferase Y17G7B.18	AT5G51130.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g42760.1	"methyltransferase domain containing protein, expressed"	Medtr4g159370.1	Bicoid-interacting 3 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.214355.1.S1_at	A	A1TS	POPTR_0018s09190	POPTR_0018s09190 (11)	scaffold_18:10070409-10071132(+) (11)	NA	Q9SL76	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein	AT2G20050.1	protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases 	LOC_Os02g17970.1	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g140110.1	Protein phosphatase 2C; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214356.1.S1_at	A	A1TS	POPTR_0018s09230	POPTR_0018s09230 (11)	scaffold_18:10098389-10099158(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214357.1.S1_at	A	A1TS	POPTR_0018s09250	POPTR_0018s09250 (10)	scaffold_18:10106457-10106900(+) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G19670.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	Medtr4g159530.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.214358.1.S1_at	A	A1TS	POPTR_0018s09260	POPTR_0018s09260 (11)	scaffold_18:10114596-10114925(+) (11)	NA	NA	NA	AT2G44970.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g48416.2	"lipase-related, putative, expressed"	Medtr8g006030.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214359.1.S1_at	A	A1TS	POPTR_0018s09280	POPTR_0018s09280 (11)	scaffold_18:10160422-10160972(-) (11)	NA	Q9SY02	Pentatricopeptide repeat-containing protein At4g02750	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01610.2	"pentatricopeptide, putative, expressed"	Medtr8g077070.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214360.1.S1_at	A	A1TS	POPTR_0018s09310	POPTR_0018s09310 (11)	scaffold_18:10187598-10188115(+) (11)	NA	Q5R7R9	SNW domain-containing protein 1	AT1G77180.2	chromatin protein family 	LOC_Os02g52250.1	"SKIP/SNW domain containing protein, expressed"	Medtr2g129890.1	SKIP/SNW 	"GO:0044260|cellular macromolecule metabolic process||GO:0000398|""nuclear mRNA splicing, via spliceosome"""	GO:0005515|protein binding	GO:0005681|spliceosomal complex
PtpAffx.214361.1.S1_x_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (11)	scaffold_18:10254088-10254277(+) (11)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214362.1.S1_at	A	A1TS	POPTR_0018s09410	POPTR_0018s09410 (11)	scaffold_18:10296828-10297735(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214363.1.S1_at	A	A1TS	POPTR_0018s09430	POPTR_0018s09430 (11)	scaffold_18:10324763-10327583(-) (11)	NA	Q10181	Uncharacterized protein C3F10.06c	AT2G40570.1	initiator tRNA phosphoribosyl transferase family protein 	LOC_Os06g36170.1	"initiator tRNA phosphoribosyl transferase family protein, putative, expressed"	Medtr4g159810.1	Initiator tRNA phosphoribosyl transferase 	NA	"GO:0016763|""transferase activity, transferring pentosyl groups"""	NA
PtpAffx.214365.1.S1_at	A	A1TS	POPTR_0018s09470	POPTR_0018s09470 (11)	scaffold_18:10349482-10350416(-) (11)	NA	NA	NA	AT2G19880.2	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os01g67870.1	expressed protein	Medtr4g159860.1	"ceramide glucosyltransferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214368.1.S1_at	A	A1TS	POPTR_0018s09530	POPTR_0018s09530 (11)	scaffold_18:10450589-10451188(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214370.1.S1_at	A	A1TS	POPTR_0018s09600	POPTR_0018s09600 (11)	scaffold_18:10564702-10565012(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214372.1.S1_at	A	A1TS	POPTR_0018s09720	POPTR_0018s09720 (11)	scaffold_18:10729844-10730313(-) (11)	NA	NA	NA	AT5G57340.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g041600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214373.1.S1_at	A	A1TS	POPTR_0018s09740	POPTR_0018s09740 (11)	scaffold_18:10774920-10775366(+) (11)	NA	Q9SUM5	Uncharacterized protein At4g30180	AT2G18969.1	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr2g041580.1	"transcription regulator, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214374.1.S1_at	A	A1TS	POPTR_0018s09840	POPTR_0018s09840 (11)	scaffold_18:10906144-10906561(+) (11)	NA	Q6DFC6	WD repeat-containing protein 75	AT2G18900.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g41620.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g129270.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214374.1.S1_s_at	A	A1TS	POPTR_0018s09840	POPTR_0018s09840 (11)	scaffold_18:10905987-10906366(+) (11)	NA	Q6DFC6	WD repeat-containing protein 75	AT2G18900.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g41620.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g129270.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214375.1.S1_at	A	A1MS	POPTR_0018s09870	POPTR_0018s09870 (11)	scaffold_18:10930655-10931053(+) (11)	NA	NA	NA	AT5G57370.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g26349.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g129240.1	"U4/U6.U5 tri-snRNP-associated protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214377.1.S1_s_at	A	A1TS	POPTR_0006s18330	POPTR_0006s18330 (11)	scaffold_6:16697794-16698559(+) (11)	POPTR_0018s09900 (7)	Q6PQQ3	AP2-like ethylene-responsive transcription factor AIL5	AT5G57390.1	AINTEGUMENTA-like 5 	LOC_Os04g55970.2	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g129150.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.214378.1.S1_at	A	A1TS	POPTR_0018s09940	POPTR_0018s09940 (11)	scaffold_18:11006522-11007024(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g129110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214379.1.S1_at	A	A1TS	POPTR_0018s09950	POPTR_0018s09950 (11)	scaffold_18:11009357-11009776(-) (11)	NA	NA	NA	AT4G25850.2	OSBP(oxysterol binding protein)-related protein 4B 	NA	NA	Medtr8g129110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214381.1.S1_at	A	A1TS	POPTR_0018s10010	POPTR_0018s10010 (11)	scaffold_18:11060518-11061061(-) (11)	NA	Q0WQW5	"Pentatricopeptide repeat-containing protein At1g59720, mitochondrial"	AT1G59720.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g09370.1	"pentatricopeptide, putative, expressed"	Medtr5g047050.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214382.1.S1_at	A	A1TS	POPTR_0018s10030	POPTR_0018s10030 (11)	scaffold_18:11072804-11073293(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g109440.1	"Actin-binding, actinin-type; Cyclin-like F-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214383.1.S1_at	A	A1TS	POPTR_0018s10060	POPTR_0018s10060 (11)	scaffold_18:11084837-11085319(-) (11)	NA	NA	NA	AT4G30230.1	unknown protein; Has 42 Blast hits to 42 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g128920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214384.1.S1_at	A	A1TS	POPTR_0018s10090	POPTR_0018s10090 (11)	scaffold_18:11093556-11094045(+) (11)	NA	Q9FKM5	DNA repair protein XRCC3 homolog	AT5G57450.2	homolog of X-ray repair cross complementing 3 (XRCC3) 	LOC_Os02g35450.1	"DNA repair protein Rad51, putative"	Medtr4g025950.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214385.1.S1_at	A	A1TS	POPTR_0018s10110	POPTR_0018s10110 (11)	scaffold_18:11099259-11099833(-) (11)	NA	NA	NA	AT4G30240.1	Syntaxin/t-SNARE family protein 	LOC_Os08g14640.1	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr8g128850.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.214386.1.S1_at	A	A1TS	POPTR_0018s10190	POPTR_0018s10190 (11)	scaffold_18:11160426-11160916(-) (11)	NA	NA	NA	AT5G57500.1	Galactosyltransferase family protein 	LOC_Os02g54370.1	"hypro1, putative, expressed"	Medtr8g128750.1	"Glycosyl transferase, family 31 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214387.1.S1_at	A	A1TS	POPTR_0018s10200	POPTR_0018s10200 (11)	scaffold_18:11173030-11173398(-) (11)	NA	NA	NA	AT5G57510.1	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g128630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214388.1.S1_at	A	A1TS	POPTR_0018s10230	POPTR_0018s10230 (11)	scaffold_18:11199507-11199904(+) (11)	NA	Q39261	Zinc finger protein 2	AT5G57520.1	zinc finger protein 2 	LOC_Os08g44190.1	"ZOS8-13 - C2H2 zinc finger protein, expressed"	Medtr8g128720.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.214388.1.S1_x_at	A	A1TS	POPTR_0018s10230	POPTR_0018s10230 (11)	scaffold_18:11199509-11199904(+) (11)	NA	Q39261	Zinc finger protein 2	AT5G57520.1	zinc finger protein 2 	LOC_Os08g44190.1	"ZOS8-13 - C2H2 zinc finger protein, expressed"	Medtr8g128720.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.214389.1.S1_at	A	A1TS	POPTR_0018s10240	POPTR_0018s10240 (11)	scaffold_18:11215502-11216111(+) (11)	NA	O65351	Subtilisin-like protease	AT3G14240.1	Subtilase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.214390.1.S1_at	A	A1TS	POPTR_0018s10250	POPTR_0018s10250 (11)	scaffold_18:11217510-11217778(-) (11)	NA	Q8L8U9	UPF0497 membrane protein At4g25830	AT4G25830.1	Uncharacterised protein family (UPF0497) 	LOC_Os02g08110.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g128600.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214391.1.S1_at	A	A1TS	POPTR_0018s10260	POPTR_0018s10260 (11)	scaffold_18:11219432-11220110(-) (11)	NA	Q5K4H9	UPF0497 membrane protein xl3	NA	NA	NA	NA	Medtr8g128600.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214393.1.S1_at	A	A1TS	POPTR_0018s10280	POPTR_0018s10280 (11)	scaffold_18:11228121-11229004(-) (11)	NA	O49397	Two-component response regulator ARR10	AT4G31920.1	response regulator 10 	LOC_Os06g08440.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.214394.1.S1_at	A	A1TS	POPTR_0018s10290	POPTR_0018s10290 (11)	scaffold_18:11233759-11234530(-) (11)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.214395.1.S1_at	A	A1TS	POPTR_0018s10300	POPTR_0018s10300 (11)	scaffold_18:11240834-11241317(-) (11)	NA	Q38857	Xyloglucan endotransglucosylase/hydrolase protein 22	AT5G57560.1	Xyloglucan endotransglucosylase/hydrolase family protein 	LOC_Os06g48180.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.214396.1.S1_at	A	A1TS	POPTR_0018s10310	POPTR_0018s10310 (11)	scaffold_18:11245487-11246471(-) (11)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr4g143390.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.214397.1.S1_at	A	A1TS	POPTR_0018s10340	POPTR_0018s10340 (11)	scaffold_18:11263801-11264190(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.1	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214397.1.S1_x_at	A	A1TS	POPTR_0018s10340	POPTR_0018s10340 (11)	scaffold_18:11263801-11264190(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.1	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214398.1.S1_at	A	A1TS	POPTR_0018s10350	POPTR_0018s10350 (11)	scaffold_18:11278090-11278553(-) (11)	NA	NA	NA	AT5G57590.1	adenosylmethionine-8-amino-7-oxononanoate transaminases 	LOC_Os08g14770.1	"aminotransferase, putative, expressed"	Medtr8g128530.1	Aminotransferase class-III 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214399.1.S1_at	A	A1TS	POPTR_0018s10360	POPTR_0018s10360 (11)	scaffold_18:11281216-11283555(-) (11)	NA	NA	NA	AT5G57590.1	adenosylmethionine-8-amino-7-oxononanoate transaminases 	LOC_Os08g14770.1	"aminotransferase, putative, expressed"	Medtr8g128530.1	Aminotransferase class-III 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214400.1.S1_at	A	A1TS	POPTR_0018s10370	POPTR_0018s10370 (11)	scaffold_18:11291730-11292884(+) (11)	NA	A2AJL3	FGGY carbohydrate kinase domain-containing protein	AT4G30310.2	FGGY family of carbohydrate kinase 	LOC_Os02g08130.3	"FGGY family of carbohydrate kinases, putative, expressed"	Medtr8g128490.1	"Carbohydrate kinase, FGGY "	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.214401.1.S1_at	A	A1TS	POPTR_0018s10370	POPTR_0018s10370 (11)	scaffold_18:11293088-11295679(+) (11)	NA	A2AJL3	FGGY carbohydrate kinase domain-containing protein	AT4G30310.2	FGGY family of carbohydrate kinase 	LOC_Os02g08130.3	"FGGY family of carbohydrate kinases, putative, expressed"	Medtr8g128490.1	"Carbohydrate kinase, FGGY "	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.214402.1.S1_s_at	A	A2TS	POPTR_0006s18610	POPTR_0018s10380 (11)//POPTR_0006s18610 (11)	scaffold_18:11309695-11309932(+) (11)//scaffold_6:17172235-17172472(+) (11)	NA	Q55A09	Probable serine/threonine-protein kinase DDB_G0272254	AT5G57610.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os02g54510.3	"protein kinase domain containing protein, expressed"	Medtr8g128470.1	Octicosapeptide/Phox/Bem1p; Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214403.1.S1_at	A	A1TS	POPTR_0018s10390	POPTR_0018s10390 (11)	scaffold_18:11333616-11333654(+) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G57620.1	myb domain protein 36 	LOC_Os08g15020.1	"MYB family transcription factor, putative, expressed"	Medtr8g128450.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214403.1.S1_x_at	A	A1TS	POPTR_0018s10390	POPTR_0018s10390 (11)	scaffold_18:11333321-11333897(+) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G57620.1	myb domain protein 36 	LOC_Os08g15020.1	"MYB family transcription factor, putative, expressed"	Medtr8g128450.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214404.1.S1_at	A	A1TS	POPTR_0018s10410	POPTR_0018s10410 (11)	scaffold_18:11348215-11348590(+) (11)	NA	Q40374	Pathogenesis-related protein PR-1	AT4G30320.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os02g54540.1	SCP-like extracellular protein	Medtr8g128380.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214406.1.S1_at	A	A1TS	POPTR_0018s10440	POPTR_0018s10440 (9)	scaffold_18:11365699-11367074(+) (10)	NA	P53118	Putative lipase ROG1	AT4G25770.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g34750.1	"serine esterase family protein, putative, expressed"	Medtr8g128330.2	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214408.1.S1_at	A	A1TS	POPTR_0018s10520	POPTR_0018s10520 (11)	scaffold_18:11441829-11442657(-) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G57670.2	Protein kinase superfamily protein 	LOC_Os08g15060.1	"ATP binding protein, putative, expressed"	Medtr8g128150.1	Tyrosine protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214409.1.S1_at	A	A1TS	POPTR_0678s00220	POPTR_0678s00220 (11)	scaffold_678:10375-10413(-) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g26160.1	"glutamate receptor, putative, expressed"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.214410.1.S1_s_at	A	A2TS	POPTR_0018s10560	POPTR_0018s10560 (11)//POPTR_0678s00210 (11)	scaffold_18:11461679-11462035(-) (11)//scaffold_678:8351-8707(+) (11)	NA	NA	NA	AT1G23710.1	Protein of unknown function (DUF1645) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214411.1.S1_at	A	A2MS	POPTR_0018s10550	POPTR_0678s00200 (11)//POPTR_0018s10550 (11)	scaffold_18:11455831-11456142(+) (11)//scaffold_678:2605-2916(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.214412.1.S1_at	A	A1TS	POPTR_0018s10550	POPTR_0018s10550 (11)	scaffold_18:11459964-11460002(+) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.214412.1.S1_s_at	A	A2TS	POPTR_0018s10550	POPTR_0018s10550 (11)//POPTR_0678s00220 (11)	scaffold_18:11459867-11460153(+) (11)//scaffold_678:10224-10510(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.214413.1.S1_at	A	A1TS	POPTR_0018s10560	POPTR_0018s10560 (11)	scaffold_18:11461514-11462081(-) (11)	NA	NA	NA	AT1G23710.1	Protein of unknown function (DUF1645) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214414.1.S1_s_at	A	A1TS	POPTR_0018s10580	POPTR_0018s10580 (11)	scaffold_18:11478141-11478394(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214416.1.S1_at	A	A1TS	POPTR_0018s10640	POPTR_0018s10640 (11)	scaffold_18:11532474-11533213(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214417.1.S1_at	A	A1TS	POPTR_0018s10680	POPTR_0018s10680 (11)	scaffold_18:11565487-11566782(-) (11)	NA	Q9ZV48	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11"	AT2G18700.1	trehalose phosphatase/synthase 11 	LOC_Os02g54820.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr8g127910.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.214418.1.S1_at	A	A1TS	POPTR_0018s10690	POPTR_0018s10690 (11)	scaffold_18:11582635-11583361(-) (11)	NA	NA	NA	AT1G64830.1	Eukaryotic aspartyl protease family protein 	NA	NA	Medtr5g008230.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214419.1.S1_at	A	A1TS	POPTR_0018s10700	POPTR_0018s10700 (10)	scaffold_18:11589860-11590264(-) (10)	NA	NA	NA	AT4G16850.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr8g127860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214421.1.S1_at	A	A1TS	POPTR_0018s10740	POPTR_0018s10740 (11)	scaffold_18:11615398-11615956(+) (11)	NA	Q9FFB8	Cation/H(+) antiporter 3	AT5G22900.1	cation/H+ exchanger 3 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr3g105350.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.214422.1.S1_at	A	A1TS	POPTR_0018s10760	POPTR_0018s10760 (11)	scaffold_18:11644764-11645300(+) (11)	NA	Q940Q4	RING-H2 finger protein ATL13	AT4G30400.1	RING/U-box superfamily protein 	LOC_Os08g34550.1	"RING-H2 finger protein, putative, expressed"	Medtr8g127740.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214423.1.S1_at	A	A1TS	POPTR_0018s10770	POPTR_0018s10770 (11)	scaffold_18:11649413-11649916(-) (11)	NA	Q9FYC1	Cation/H(+) antiporter 4	AT3G44900.1	cation/H+ exchanger 4 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr7g043370.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.214424.1.S1_at	A	A1TS	POPTR_0018s10780	POPTR_0018s10780 (11)	scaffold_18:11656682-11658324(+) (11)	NA	Q1LZA0	GPI mannosyltransferase 3	AT5G14850.1	Alg9-like mannosyltransferase family 	LOC_Os01g39810.2	"Alg9-like mannosyltransferase protein, putative, expressed"	Medtr8g127680.1	Alg9-like mannosyltransferase 	GO:0006506|GPI anchor biosynthetic process	"GO:0016757|""transferase activity, transferring glycosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.214426.1.S1_at	A	A1TS	POPTR_0018s10810	POPTR_0018s10810 (11)	scaffold_18:11675538-11675881(-) (11)	NA	NA	NA	AT4G30410.1	sequence-specific DNA binding transcription factors 	LOC_Os06g44320.1	expressed protein	Medtr8g127630.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214426.1.S1_x_at	A	A1TS	POPTR_0018s10810	POPTR_0018s10810 (11)	scaffold_18:11675545-11676001(-) (11)	NA	NA	NA	AT4G30410.1	sequence-specific DNA binding transcription factors 	LOC_Os06g44320.1	expressed protein	Medtr8g127630.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214428.1.S1_at	A	A1TS	POPTR_0018s10840	POPTR_0018s10840 (11)	scaffold_18:11728967-11729773(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT4G30420.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os09g25810.2	"nodulin, putative, expressed"	Medtr8g005860.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.214429.1.S1_at	A	A1TS	POPTR_0018s10850	POPTR_0018s10850 (11)	scaffold_18:11735041-11735747(+) (11)	NA	NA	NA	AT4G30420.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os09g25810.2	"nodulin, putative, expressed"	Medtr8g006150.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214430.1.S1_at	A	A1TS	POPTR_0018s10860	POPTR_0018s10860 (11)	scaffold_18:11736478-11737401(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g077940.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214431.1.S1_at	A	A1TS	POPTR_0018s10870	POPTR_0018s10870 (11)	scaffold_18:11738594-11739315(-) (11)	NA	P47082	Vacuolar amino acid transporter 1	AT3G28960.1	Transmembrane amino acid transporter family protein 	LOC_Os04g38680.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g010050.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214432.1.S1_at	A	A1TS	POPTR_0018s10900	POPTR_0018s10900 (11)	scaffold_18:11757310-11758303(+) (11)	NA	NA	NA	AT5G57810.1	tetraspanin15 	LOC_Os09g25760.1	"tetraspanin family protein, putative, expressed"	Medtr8g078110.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.214433.1.S1_at	A	A1TS	POPTR_0018s10910	POPTR_0018s10910 (11)	scaffold_18:11759296-11759708(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214435.1.S1_at	A	A1MS	POPTR_0018s10960	POPTR_0018s10960 (11)	scaffold_18:11796205-11796500(-) (11)	NA	Q75K12	5'-nucleotidase domain-containing protein DDB_G0275467	AT2G23890.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os09g25640.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr5g089940.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214436.1.S1_at	A	A1TS	POPTR_0018s10980	POPTR_0018s10980 (11)	scaffold_18:11803451-11804633(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214437.1.S1_at	A	A1TS	POPTR_0018s11020	POPTR_0018s11020 (11)	scaffold_18:11829228-11832460(-) (11)	NA	Q5QA94	Autophagy-related protein 18	AT4G30510.1	homolog of yeast autophagy 18 (ATG18) B 	LOC_Os02g54910.1	"atATG18b, putative, expressed"	Medtr8g144620.1	"AtATG18b, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214438.1.S1_at	A	A1TS	POPTR_0018s11030	POPTR_0018s11030 (11)	scaffold_18:11837610-11838596(-) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT2G23950.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g34380.1	"receptor-like kinase, putative, expressed"	Medtr8g144660.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.214439.1.S1_at	A	A1TS	POPTR_0018s11040	POPTR_0018s11040 (11)	scaffold_18:11857730-11858318(+) (11)	NA	O24575	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os04g42090.5	"CPuORF7 - conserved peptide uORF-containing transcript, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.214440.1.S1_at	A	A1TS	POPTR_0018s11090	POPTR_0018s11090 (11)	scaffold_18:11891052-11891720(+) (11)	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os02g08270.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214441.1.S1_at	A	A1TS	POPTR_0018s11100	POPTR_0018s11100 (11)	scaffold_18:11899221-11903184(-) (11)	NA	Q949T8	Histone-lysine N-methyltransferase ASHR3	AT4G30860.1	SET domain group 4 	LOC_Os02g39800.1	SET domain containing protein	Medtr6g070840.1	Nuclear protein SET; SET-related region; AWS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214442.1.S1_at	A	A1TS	POPTR_0018s11110	POPTR_0018s11110 (11)	scaffold_18:11914608-11915855(-) (11)	NA	Q94AN4	AP2-like ethylene-responsive transcription factor At1g16060	AT1G16060.1	ARIA-interacting double AP2 domain protein 	LOC_Os09g25600.1	"AP2 domain containing protein, expressed"	Medtr8g144720.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.214443.1.S1_at	A	A1TS	POPTR_0018s11150	POPTR_0018s11150 (11)	scaffold_18:11934738-11935289(-) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214444.1.S1_at	A	A1TS	POPTR_0018s11150	POPTR_0018s11150 (9)	scaffold_18:11941229-11941688(-) (9)	NA	B0W2S0	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214445.1.S1_at	A	A1MS	POPTR_0018s11150	POPTR_0018s11150 (11)	scaffold_18:11943324-11943903(-) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214446.1.S1_at	A	A1TS	POPTR_0018s11150	POPTR_0018s11150 (10)	scaffold_18:11944363-11945025(-) (10)	NA	B0W2S0	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214447.1.S1_at	A	A1TS	POPTR_0018s11160	POPTR_0018s11160 (11)	scaffold_18:11949835-11950512(-) (11)	NA	NA	NA	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.3	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214448.1.S1_at	A	A1TS	POPTR_0018s11190	POPTR_0018s11190 (11)	scaffold_18:11978602-11979026(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g093190.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214449.1.S1_at	A	A1TS	POPTR_0018s11200	POPTR_0018s11200 (11)	scaffold_18:11993425-11993724(-) (11)	NA	NA	NA	AT4G30790.1	"INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink). "	LOC_Os02g08350.1	expressed protein	Medtr8g144870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214450.1.S1_at	A	A1TS	POPTR_0018s11220	POPTR_0018s11220 (11)	scaffold_18:12017124-12019725(+) (11)	NA	P51949	CDK-activating kinase assembly factor MAT1	AT4G30820.3	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related 	LOC_Os06g07480.1	"CDK-activating kinase assembly factor MAT1 family protein, expressed"	Medtr6g006440.1	Cdk-activating kinase assembly factor (MAT1) 	GO:0007049|cell cycle	NA	GO:0005634|nucleus
PtpAffx.214450.1.S1_x_at	A	A1TS	POPTR_0018s11220	POPTR_0018s11220 (11)	scaffold_18:12017124-12020003(+) (11)	NA	P51949	CDK-activating kinase assembly factor MAT1	AT4G30820.3	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related 	LOC_Os06g07480.1	"CDK-activating kinase assembly factor MAT1 family protein, expressed"	Medtr6g006440.1	Cdk-activating kinase assembly factor (MAT1) 	GO:0007049|cell cycle	NA	GO:0005634|nucleus
PtpAffx.214451.1.S1_at	A	A1TS	POPTR_0018s11230	POPTR_0018s11230 (11)	scaffold_18:12023714-12026614(-) (11)	NA	O24600	"DNA-directed RNA polymerase 3, chloroplastic"	AT2G24120.1	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.214452.1.S1_at	A	A1TS	POPTR_0018s11240	POPTR_0018s11240 (11)	scaffold_18:12044195-12044920(+) (11)	NA	Q9ZUI0	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os06g08710.1	"receptor-like protein kinase precursor, putative"	Medtr8g144900.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.214453.1.S1_at	A	A1TS	POPTR_0018s11250	POPTR_0018s11250 (9)	scaffold_18:12053396-12053512(-) (9)	NA	NA	NA	AT5G57830.1	"Protein of unknown function, DUF593 "	LOC_Os08g34340.1	"DUF593 domain containing protein, expressed"	Medtr8g144910.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214453.1.S1_s_at	A	A1TS	POPTR_0018s11250	POPTR_0018s11250 (11)	scaffold_18:12052624-12053119(-) (11)	NA	NA	NA	AT5G57830.1	"Protein of unknown function, DUF593 "	LOC_Os08g34340.1	"DUF593 domain containing protein, expressed"	Medtr8g144910.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214454.1.S1_at	A	A1TS	POPTR_0018s11270	POPTR_0018s11270 (11)	scaffold_18:12068606-12069853(+) (11)	NA	Q05627	Uncharacterized protein Cbei_0202	AT4G30720.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os05g34040.1	"monooxygenase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.214455.1.S1_at	A	A1TS	POPTR_0018s11280	POPTR_0018s11280 (11)	scaffold_18:12086753-12087102(+) (11)	NA	NA	NA	AT4G30710.1	Family of unknown function (DUF566)  	LOC_Os09g25500.1	expressed protein	Medtr8g144970.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214455.1.S1_s_at	A	A1TS	POPTR_0018s11280	POPTR_0018s11280 (11)	scaffold_18:12087094-12087236(+) (11)	NA	NA	NA	AT4G30710.1	Family of unknown function (DUF566)  	LOC_Os09g25500.1	expressed protein	Medtr8g144970.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214458.1.S1_s_at	A	A1TS	POPTR_0018s11380	POPTR_0018s11380 (11)	scaffold_18:12152266-12152843(+) (11)	POPTR_0018s11370 (7)	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.214461.1.S1_at	A	A1TS	POPTR_0018s11450	POPTR_0018s11450 (11)	scaffold_18:12180416-12180724(+) (11)	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.214463.1.S1_at	A	A1MS	POPTR_0018s11570	POPTR_0018s11570 (11)	scaffold_18:12250836-12251333(+) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT2G23945.1	Eukaryotic aspartyl protease family protein 	LOC_Os09g27910.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g030330.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214464.1.S1_at	A	A1TS	POPTR_0018s11650	POPTR_0018s11650 (11)	scaffold_18:12299191-12300496(+) (11)//scaffold_804:7562-8867(+) (10)	POPTR_0804s00200 (6)	Q9ZUH3	Probable purine permease 5	AT2G24220.2	purine permease 5 	LOC_Os09g38510.1	"purine permease, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214465.1.S1_s_at	A	A1TS	POPTR_0018s11680	POPTR_0018s11680 (11)	scaffold_18:12327460-12328339(-) (11)	NA	Q9FPS4	Ubiquitin carboxyl-terminal hydrolase 23	AT5G57990.1	ubiquitin-specific protease 23 	LOC_Os06g08530.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g145470.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.214466.1.S1_s_at	A	A1TS	POPTR_0018s11700	POPTR_0018s11700 (11)	scaffold_18:12351802-12352180(+) (11)	NA	NA	NA	AT2G24240.1	BTB/POZ domain with WD40/YVTN repeat-like protein 	LOC_Os04g42310.1	"B4-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed"	Medtr8g145520.1	K+ channel tetramerisation 	GO:0006813|potassium ion transport	GO:0005249|voltage-gated potassium channel activity	GO:0008076|voltage-gated potassium channel complex
PtpAffx.214467.1.S1_at	A	A1TS	POPTR_0018s11720	POPTR_0018s11720 (11)	scaffold_18:12365966-12367801(+) (11)	NA	NA	NA	AT5G46220.1	Protein of unknown function (DUF616) 	LOC_Os01g11220.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g024680.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214468.1.S1_at	A	A1TS	POPTR_0018s11730	POPTR_0018s11730 (11)	scaffold_18:12374485-12375059(+) (11)	NA	Q9LIG2	Receptor-like protein kinase At3g21340	AT3G21340.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g39180.1	"nodulation receptor kinase precursor, putative"	Medtr7g143320.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214469.1.S1_at	A	A1TS	POPTR_0018s11740	POPTR_0018s11740 (11)	scaffold_18:12381470-12382060(+) (11)	NA	Q6ZCX3	Formin-like protein 6	AT5G58160.1	actin binding 	LOC_Os08g17820.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g145580.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214471.1.S1_s_at	A	A1TS	POPTR_0018s11760	POPTR_0018s11760 (11)	scaffold_18:12409445-12409780(+) (11)	NA	Q00IB6	RNA polymerase II C-terminal domain phosphatase-like 4	AT5G58003.1	C-terminal domain phosphatase-like 4 	LOC_Os05g32430.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g055870.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.214472.1.S1_s_at	A	A1TS	POPTR_0018s11760	POPTR_0018s11760 (11)	scaffold_18:12410566-12410625(+) (11)	NA	Q00IB6	RNA polymerase II C-terminal domain phosphatase-like 4	AT5G58003.1	C-terminal domain phosphatase-like 4 	LOC_Os05g32430.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g055870.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.214473.1.S1_at	A	A1TS	POPTR_0018s11780	POPTR_0018s11780 (11)	scaffold_18:12439913-12440409(-) (11)	NA	Q9C688	AP2/ERF and B3 domain-containing transcription factor At1g51120	AT1G51120.1	AP2/B3 transcription factor family protein 	LOC_Os01g49830.1	"B3 DNA binding domain containing protein, expressed"	Medtr1g147280.1	Pathogenesis-related transcriptional factor and ERF; Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.214474.1.S1_at	A	A1TS	POPTR_0018s11790	POPTR_0018s11790 (10)	scaffold_18:12458703-12459468(+) (11)	NA	NA	NA	AT5G58005.2	"Cytochrome c oxidase, subunit Vib family protein "	LOC_Os08g34270.2	expressed protein	Medtr8g145690.1	hypothetical protein 	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
PtpAffx.214474.1.S1_s_at	A	A1TS	POPTR_0018s11790	POPTR_0018s11790 (11)	scaffold_18:12458933-12459430(+) (11)	NA	NA	NA	AT5G58005.2	"Cytochrome c oxidase, subunit Vib family protein "	LOC_Os08g34270.2	expressed protein	Medtr8g145690.1	hypothetical protein 	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
PtpAffx.214475.1.S1_at	A	A1TS	POPTR_0018s11810	POPTR_0018s11810 (11)	scaffold_18:12477717-12479750(-) (11)	NA	Q04264	Sister chromatid cohesion protein PDS5	AT4G31880.2	LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). 	LOC_Os02g39920.1	"AT hook motif family protein, expressed"	Medtr1g017070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214476.1.S1_at	A	A1TS	POPTR_0018s11830	POPTR_0018s11830 (11)	scaffold_18:12494662-12495242(+) (11)	NA	A5GFW7	UPF0549 protein C20orf43 homolog	AT5G58020.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os06g08490.1	"X0001, putative, expressed"	Medtr8g145760.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214477.1.S1_at	A	A1TS	POPTR_0018s11840	POPTR_0018s11840 (11)	scaffold_18:12498834-12499388(-) (11)	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT2G19070.1	spermidine hydroxycinnamoyl transferase 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	Medtr8g129460.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.214478.1.S1_at	A	A1TS	POPTR_0018s11860	POPTR_0018s11860 (10)	scaffold_18:12523158-12523934(+) (10)	NA	NA	NA	AT5G58040.1	homolog of yeast FIP1 [V] 	LOC_Os03g51520.2	"fip1 motif family protein, expressed"	Medtr8g137570.1	Fip1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214479.1.S1_at	A	A1TS	POPTR_0018s11870	POPTR_0018s11870 (11)	scaffold_18:12527494-12527842(+) (11)	NA	Q9C8T1	ABC transporter I family member 1	AT1G63270.1	non-intrinsic ABC protein 10 	LOC_Os04g53550.1	"ABC transporter, ATP-binding protein, putative"	Medtr8g145960.1	ABC transporter related 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.214480.1.S1_at	A	A1TS	POPTR_0018s11880	POPTR_0018s11880 (11)	scaffold_18:12530585-12534140(+) (11)	NA	NA	NA	AT4G30993.2	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os06g08470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214481.1.S1_at	A	A1TS	POPTR_0018s11890	POPTR_0018s11890 (11)	scaffold_18:12552335-12553025(-) (11)	NA	Q9FJ62	Probable glycerophosphoryl diester phosphodiesterase 1	AT5G58050.1	SHV3-like 4 	LOC_Os02g09450.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr8g146010.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.214482.1.S1_at	A	A1TS	POPTR_0018s11950	POPTR_0018s11950 (11)	scaffold_18:12587673-12588182(+) (11)	NA	NA	NA	AT2G24300.2	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214485.1.S1_s_at	A	A2TS	POPTR_0018s12000	POPTR_0018s12000 (11)//POPTR_0018s12010 (10)	scaffold_18:12633786-12634137(+) (11)//scaffold_18:12637164-12637527(+) (10)	NA	Q6RY07	Acidic mammalian chitinase	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain 	LOC_Os11g27400.1	"glycosyl hydrolase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.214486.1.S1_at	A	A1TS	POPTR_0018s12020	POPTR_0018s12020 (10)	scaffold_18:12641582-12641999(-) (10)	NA	Q92564	DCN1-like protein 4	AT1G15860.2	Domain of unknown function (DUF298) 	LOC_Os08g34070.1	"DCN1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214487.1.S1_at	A	A1TS	POPTR_0018s12040	POPTR_0018s12040 (11)	scaffold_18:12654716-12655327(+) (11)	NA	Q9M2A0	"ATPase 8, plasma membrane-type"	AT3G42640.1	H(+)-ATPase 8 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.214488.1.S1_at	A	A1TS	POPTR_0018s12050	POPTR_0018s12050 (11)	scaffold_18:12658400-12660085(+) (11)	NA	Q4KLQ5	WD repeat-containing protein 76	AT1G80710.1	DROUGHT SENSITIVE 1 	LOC_Os08g18150.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g078770.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214489.1.S1_at	A	A1TS	POPTR_0018s12060	POPTR_0018s12060 (11)	scaffold_18:12660759-12661820(-) (11)	NA	NA	NA	AT2G22650.1	FAD-dependent oxidoreductase family protein 	LOC_Os06g08300.2	"FAD dependent oxidoreductase domain containing protein, expressed"	NA	NA	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.214490.1.S1_at	A	A1TS	POPTR_0018s12070	POPTR_0018s12070 (11)	scaffold_18:12665496-12665943(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214491.1.S1_at	A	A1TS	POPTR_0018s12080	POPTR_0018s12080 (11)	scaffold_18:12669623-12669895(-) (11)	POPTR_0006s20300 (6)	P55862	DNA replication licensing factor mcm5-A	AT2G07690.1	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os02g55410.1	"MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed"	Medtr4g165910.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.214492.1.S1_at	A	A1TS	POPTR_0018s12080	POPTR_0018s12080 (11)	scaffold_18:12672477-12672679(-) (11)	NA	P55862	DNA replication licensing factor mcm5-A	AT2G07690.1	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os02g55410.1	"MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed"	Medtr4g165910.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.214493.1.S1_at	A	A1TS	POPTR_0018s12090	POPTR_0018s12090 (11)	scaffold_18:12675695-12676266(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g32025.1	"uroporphyrinogen-III synthase, putative"	NA	NA	GO:0033014|tetrapyrrole biosynthetic process	GO:0004852|uroporphyrinogen-III synthase activity	NA
PtpAffx.214494.1.S1_s_at	A	A1TS	POPTR_0018s12100	POPTR_0018s12100 (11)	scaffold_18:12676983-12677366(-) (11)	NA	Q9FII5	Leucine-rich repeat receptor-like protein kinase TDR	AT5G51350.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os08g05290.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr2g034580.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.214495.1.S1_at	A	A1TS	POPTR_0018s12140	POPTR_0018s12140 (11)	scaffold_18:12715377-12716804(-) (11)	NA	Q9FIJ7	"Probable adenylate kinase 2, chloroplastic"	AT5G35170.1	adenylate kinase family protein 	LOC_Os08g19140.1	"adenylate kinase family protein, putative, expressed"	Medtr4g041640.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214496.1.S1_at	A	A1TS	POPTR_0018s12150	POPTR_0018s12150 (11)	scaffold_18:12725093-12725658(-) (11)	NA	Q92544	Transmembrane 9 superfamily member 4	AT5G35160.2	Endomembrane protein 70 protein family 	LOC_Os02g55440.2	"transmembrane 9 superfamily member, putative, expressed"	Medtr3g107100.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.214497.1.S1_at	A	A1TS	POPTR_0018s12180	POPTR_0018s12180 (11)	scaffold_18:12743537-12743699(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g122770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214498.1.S1_at	A	A1TS	POPTR_0018s12190	POPTR_0018s12190 (11)	scaffold_18:12745931-12747022(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214499.1.S1_s_at	A	A2TS	POPTR_0006s20460	POPTR_0006s20460 (11)//POPTR_0018s12220 (11)	scaffold_18:12764923-12765087(-) (11)//scaffold_6:19470739-19470903(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G46920.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os06g08280.1	"protein kinase domain containing protein, expressed"	Medtr8g122640.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214499.1.S1_x_at	A	A1TS	POPTR_0018s12220	POPTR_0018s12220 (11)	scaffold_18:12764936-12765126(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G46920.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os06g08280.1	"protein kinase domain containing protein, expressed"	Medtr8g122640.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214500.1.S1_at	A	A1TS	POPTR_0018s12230	POPTR_0018s12230 (11)	scaffold_18:12778163-12778579(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214501.1.S1_at	A	A1TS	POPTR_0018s12290	POPTR_0018s12290 (11)	scaffold_18:12809336-12810219(+) (11)	NA	Q7SY29	Sugar phosphate exchanger 2	AT2G13100.1	Major facilitator superfamily protein 	LOC_Os04g46880.2	"transporter, major facilitator family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214502.1.S1_at	A	A1TS	POPTR_0018s12310	POPTR_0018s12310 (11)	scaffold_18:12818909-12819318(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214506.1.S1_at	A	A1TS	POPTR_0018s12350	POPTR_0018s12350 (10)	scaffold_18:12853453-12853924(-) (10)	NA	NA	NA	AT2G47910.1	chlororespiratory reduction 6 	LOC_Os08g07060.1	"CRR6, putative, expressed"	Medtr8g122450.1	"CRR6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214507.1.S1_at	A	A1TS	POPTR_0018s12380	POPTR_0018s12380 (11)	scaffold_18:12872155-12872426(+) (11)	NA	NA	NA	AT2G12646.1	PLATZ transcription factor family protein 	LOC_Os02g09070.1	"zinc-binding protein, putative, expressed"	Medtr8g122390.1	Protein of unknown function DUF597 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214507.1.S1_s_at	A	A2TS	POPTR_0006s05950	POPTR_0018s12380 (11)//POPTR_0006s05950 (11)	scaffold_18:12872120-12872960(+) (11)//scaffold_6:4201820-4202566(+) (11)	NA	NA	NA	AT2G12646.1	PLATZ transcription factor family protein 	LOC_Os02g09070.1	"zinc-binding protein, putative, expressed"	Medtr8g122390.1	Protein of unknown function DUF597 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214507.1.S1_x_at	A	A1TS	POPTR_0018s12380	POPTR_0018s12380 (11)	scaffold_18:12872155-12873126(+) (11)	NA	NA	NA	AT2G12646.1	PLATZ transcription factor family protein 	LOC_Os02g09070.1	"zinc-binding protein, putative, expressed"	Medtr8g122390.1	Protein of unknown function DUF597 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214508.1.S1_x_at	A	A1TS	POPTR_0018s12420	POPTR_0018s12420 (9)	scaffold_18:12910278-12910588(+) (9)	NA	Q96FX7	tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A	AT5G14600.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g25360.1	"tRNA methyltransferase complex GCD14 subunit, putative, expressed"	Medtr2g018150.1	tRNA methyltransferase complex GCD14 subunit 	GO:0044281|small molecule metabolic process||GO:0030488|tRNA methylation||GO:0044260|cellular macromolecule metabolic process	GO:0016429|tRNA (adenine-N1-)-methyltransferase activity	NA
PtpAffx.214510.1.S1_at	A	A1TS	POPTR_0025s00200	POPTR_0025s00200 (11)	scaffold_25:3269-3309(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT1G74170.1	receptor like protein 13 	LOC_Os04g48760.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.214511.1.S1_at	A	A1TS	POPTR_0025s00330	POPTR_0025s00330 (11)	scaffold_25:109439-109877(+) (11)	NA	A8WQT4	"Calcium uptake protein 1 homolog, mitochondrial"	AT4G32060.1	calcium-binding EF hand family protein 	LOC_Os04g42430.2	"EF hand family protein, putative, expressed"	Medtr3g137740.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214512.1.S1_at	A	A1TS	POPTR_0018s12480	POPTR_0018s12480 (11)	scaffold_18:12952587-12954191(-) (11)	POPTR_0025s00360 (7)	Q13438	Protein OS-9	AT5G35080.1	"INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g43710.1	"glucosidase II beta subunit-like domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214513.1.S1_at	A	A2TS	POPTR_0025s00370	POPTR_0025s00370 (11)//POPTR_0018s12490 (10)	scaffold_18:12963887-12964217(+) (10)//scaffold_25:134692-135022(+) (11)	NA	Q91Z38	Tetratricopeptide repeat protein 1	AT2G25290.3	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein 	LOC_Os09g38390.1	"octicosapeptide/Phox/Bem1p, putative, expressed"	Medtr8g147450.1	Octicosapeptide/Phox/Bem1p; Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214514.1.S1_x_at	A	A1TS	POPTR_0018s12450	POPTR_0018s12450 (11)	scaffold_18:12924618-12924775(+) (11)	NA	NA	NA	AT5G49290.1	receptor like protein 56 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.214516.1.S1_s_at	A	A2TS	POPTR_0025s00210	POPTR_0025s00210 (11)//POPTR_0025s00280 (11)	scaffold_25:7360-7647(-) (11)//scaffold_25:69516-69803(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214517.1.S1_at	A	A1TS	POPTR_0018s12470	POPTR_0018s12470 (11)	scaffold_18:12941280-12942454(+) (11)	NA	NA	NA	AT2G36670.2	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.2	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr7g124500.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214518.1.S1_at	A	A1TS	POPTR_0025s00290	POPTR_0025s00290 (11)	scaffold_25:81745-84807(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.214519.1.S1_at	A	A1TS	POPTR_0204s00250	POPTR_0204s00250 (11)	scaffold_204:26550-27091(-) (11)	NA	NA	NA	AT5G49290.1	receptor like protein 56 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.214520.1.S1_at	A	A1TS	POPTR_0204s00240	POPTR_0204s00240 (11)	scaffold_204:18845-19313(-) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT1G07390.2	receptor like protein 1 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_74.1	Leucine-rich repeat AC233100.6 329525-327081 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.214521.1.S1_at	A	A1TS	POPTR_0204s00230	POPTR_0204s00230 (11)	scaffold_204:9302-15856(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g42430.2	"EF hand family protein, putative, expressed"	Medtr3g137740.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214522.1.S1_at	A	A1TS	POPTR_0204s00220	POPTR_0204s00220 (11)	scaffold_204:12031-12268(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214523.1.S1_at	A	A1TS	POPTR_0204s00210	POPTR_0204s00210 (11)	scaffold_204:6938-7470(-) (11)	NA	NA	NA	AT1G58190.1	receptor like protein 9 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.214524.1.S1_at	A	A1TS	POPTR_0018s12440	POPTR_0018s12440 (9)	scaffold_18:12912645-12913877(+) (10)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G07390.1	receptor like protein 1 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.214525.1.S1_s_at	A	A2TS	POPTR_0018s12490	POPTR_0018s12490 (11)//POPTR_0025s00370 (11)	scaffold_18:12963034-12963302(+) (11)//scaffold_25:133692-133960(+) (11)	NA	Q91Z38	Tetratricopeptide repeat protein 1	AT5G20360.1	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein 	LOC_Os09g38390.1	"octicosapeptide/Phox/Bem1p, putative, expressed"	Medtr8g147450.1	Octicosapeptide/Phox/Bem1p; Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214526.1.S1_at	A	A1TS	POPTR_0025s00380	POPTR_0025s00380 (11)	scaffold_25:138892-139088(-) (11)	NA	NA	NA	AT1G15740.1	Leucine-rich repeat family protein 	LOC_Os04g42470.1	"regulatory subunit, putative, expressed"	Medtr8g122250.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214527.1.S1_at	A	A1MS	POPTR_0025s00390	POPTR_0025s00390 (11)	scaffold_25:149086-149125(-) (11)	POPTR_0006s06050 (8)	Q52T38	S-acyltransferase TIP1	AT5G20350.1	Ankyrin repeat family protein with DHHC zinc finger domain 	LOC_Os06g43680.1	"palmitoyltransferase TIP1, putative, expressed"	Medtr8g122240.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.214527.1.S1_s_at	A	A1TS	POPTR_0025s00390	POPTR_0025s00390 (11)	scaffold_25:149123-150042(-) (11)	NA	Q52T38	S-acyltransferase TIP1	AT5G20350.1	Ankyrin repeat family protein with DHHC zinc finger domain 	LOC_Os06g43680.1	"palmitoyltransferase TIP1, putative, expressed"	Medtr8g122240.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.214528.1.S1_at	A	A1TS	POPTR_0025s00410	POPTR_0025s00410 (11)	scaffold_25:164875-165126(+) (11)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.2	glucuronidase 3 	LOC_Os06g08090.2	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.214528.1.S1_x_at	A	A1TS	POPTR_0025s00410	POPTR_0025s00410 (11)	scaffold_25:164878-165270(+) (11)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.2	glucuronidase 3 	LOC_Os06g08090.2	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.214529.1.S1_at	A	A1TS	POPTR_0025s00420	POPTR_0025s00420 (11)	scaffold_25:167132-168372(-) (11)	NA	Q3E9A0	"Probable anion transporter 6, chloroplastic"	AT5G20380.1	phosphate transporter 4;5 	LOC_Os09g38410.1	"sialin, putative, expressed"	Medtr8g122090.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214529.1.S1_x_at	A	A1TS	POPTR_0025s00420	POPTR_0025s00420 (11)	scaffold_25:167132-168372(-) (11)	NA	Q3E9A0	"Probable anion transporter 6, chloroplastic"	AT5G20380.1	phosphate transporter 4;5 	LOC_Os09g38410.1	"sialin, putative, expressed"	Medtr8g122090.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21453.1.S1_s_at	A	A1TS	POPTR_0005s22810	POPTR_0005s22810 (11)	scaffold_5:21698991-21699671(-) (11)	NA	Q9H6S0	Probable ATP-dependent RNA helicase YTHDC2	AT2G30800.1	helicase in vascular tissue and tapetum 	LOC_Os01g56190.1	"HVT1, putative, expressed"	Medtr5g097550.1	"Single-stranded nucleic acid binding R3H; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.214530.1.S1_at	A	A1TS	POPTR_0025s00430	POPTR_0025s00430 (11)	scaffold_25:178770-181465(+) (11)	NA	Q39224	Protein SRG1	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08060.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.214530.1.S1_x_at	A	A1TS	POPTR_0025s00430	POPTR_0025s00430 (11)	scaffold_25:178345-181465(+) (11)	NA	Q39224	Protein SRG1	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08060.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.214531.1.S1_at	A	A1TS	POPTR_0025s00440	POPTR_0025s00440 (11)	scaffold_25:184552-185230(+) (11)	NA	Q39224	Protein SRG1	AT5G54000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g17940.6	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.214532.1.S1_at	A	A1TS	POPTR_0025s00450	POPTR_0025s00450 (11)	scaffold_25:193057-194461(+) (11)	NA	Q54PL2	Integrator complex subunit 7 homolog	AT4G20060.1	ARM repeat superfamily protein 	LOC_Os01g09305.1	"EMB1895, putative"	Medtr4g108030.1	"Start codon is not identified Stop codon is not identified, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214533.1.S1_at	A	A1MS	POPTR_0025s00460	POPTR_0025s00460 (10)	scaffold_25:196337-196806(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214534.1.S1_at	A	A2TS	POPTR_0025s00470	POPTR_1107s00200 (11)//POPTR_0025s00470 (11)	scaffold_1107:2592-3006(+) (11)//scaffold_25:199954-200368(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214535.1.S1_s_at	A	A1TS	POPTR_0025s00530	POPTR_0025s00530 (11)	scaffold_25:238203-238553(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214538.1.S1_s_at	A	A1TS	POPTR_0025s00540	POPTR_0025s00540 (11)	scaffold_25:241777-242205(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214539.1.S1_a_at	A	A1TS	POPTR_0947s00200	POPTR_0947s00200 (11)	scaffold_947:1201-1561(-) (11)//scaffold_947:1323-1693(-) (11)//scaffold_947:1443-1813(-) (11)//scaffold_947:1563-1933(-) (11)//scaffold_947:1683-2053(-) (11)//scaffold_947:1803-2173(-) (11)//scaffold_947:1923-2281(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214539.1.S1_at	A	A1TS	POPTR_0947s00200	POPTR_0947s00200 (10)	scaffold_947:1323-2662(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214540.1.S1_at	A	A1TS	POPTR_0025s00560	POPTR_0025s00560 (11)	scaffold_25:250642-250726(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.214541.1.S1_at	A	A1TS	POPTR_0025s00580	POPTR_0025s00580 (11)	scaffold_25:275131-275715(-) (11)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os10g01550.2	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.214542.1.S1_at	A	A1TS	POPTR_0025s00600	POPTR_0025s00600 (11)	scaffold_25:292541-293742(+) (11)	NA	Q9JM76	Actin-related protein 2/3 complex subunit 3	AT1G60430.2	actin-related protein C3 	LOC_Os02g14000.2	"actin-related protein 2/3 complex subunit 3, putative, expressed"	Medtr8g121950.1	"ARP2/3 complex, 21 kDa p21-Arc subunit "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.214543.1.S1_at	A	A1TS	POPTR_0025s00620	POPTR_0025s00620 (11)	scaffold_25:307329-307566(+) (11)	NA	Q6S5G3	"Translocase of chloroplast 90, chloroplastic"	AT5G20300.2	Avirulence induced gene (AIG1) family protein 	LOC_Os12g09570.2	"GTP binding protein, putative, expressed"	Medtr8g121750.1	"GTP-binding protein, HSR1-related; Chloroplast protein import component Toc86/159 "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.214543.1.S1_x_at	A	A1TS	POPTR_0025s00620	POPTR_0025s00620 (11)	scaffold_25:307168-307566(+) (11)	NA	Q6S5G3	"Translocase of chloroplast 90, chloroplastic"	AT5G20300.2	Avirulence induced gene (AIG1) family protein 	LOC_Os12g09570.2	"GTP binding protein, putative, expressed"	Medtr8g121750.1	"GTP-binding protein, HSR1-related; Chloroplast protein import component Toc86/159 "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.214544.1.S1_at	A	A1TS	POPTR_0025s00630	POPTR_0025s00630 (11)	scaffold_25:308806-309460(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g55920.1	expressed protein	Medtr8g121730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214545.1.S1_at	A	A1TS	POPTR_0025s00650	POPTR_0025s00650 (11)	scaffold_25:328884-329438(+) (11)	NA	Q39262	Zinc finger protein 3	AT5G25160.1	zinc finger protein 3 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	AC225611_12.1	"Zinc finger, C2H2-type AC225611.10 76760-75060 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.214546.1.S1_at	A	A1TS	POPTR_0025s00660	POPTR_0025s00660 (11)	scaffold_25:333486-334059(+) (11)	NA	Q39262	Zinc finger protein 3	AT5G10970.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr5g008340.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.214547.1.S1_at	A	A1TS	POPTR_0025s00680	POPTR_0025s00680 (11)	scaffold_25:358189-358590(+) (11)	NA	P60300	Putative chloride channel-like protein CLC-g	AT5G33280.1	Voltage-gated chloride channel family protein 	LOC_Os04g55210.1	"chloride channel protein, putative, expressed"	Medtr8g121690.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.214548.1.S1_at	A	A1TS	POPTR_0025s00690	POPTR_0025s00690 (10)	scaffold_25:362042-362269(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214550.1.S1_at	A	A1TS	POPTR_0025s00720	POPTR_0025s00720 (11)	scaffold_25:377068-377640(-) (11)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	LOC_Os12g40080.1	B3 DNA binding domain containing protein	Medtr7g047480.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.214551.1.S1_at	A	A1TS	POPTR_0025s00730	POPTR_0025s00730 (11)	scaffold_25:379339-379380(-) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT2G11520.1	calmodulin-binding receptor-like cytoplasmic kinase 3 	LOC_Os09g03620.1	"wall-associated receptor kinase-like 20 precursor, putative, expressed"	Medtr8g121680.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214551.1.S1_s_at	A	A1TS	POPTR_0025s00730	POPTR_0025s00730 (11)	scaffold_25:379249-381120(-) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT2G11520.1	calmodulin-binding receptor-like cytoplasmic kinase 3 	LOC_Os09g03620.1	"wall-associated receptor kinase-like 20 precursor, putative, expressed"	Medtr8g121680.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214552.1.S1_at	A	A1TS	POPTR_0025s00750	POPTR_0025s00750 (11)	scaffold_25:409700-410049(+) (11)	NA	Q3EAR7	Probable glycosyltransferase At3g42180	AT3G42180.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr8g121620.1	Exostosin-like 	NA	NA	GO:0016021|integral to membrane
PtpAffx.214553.1.S1_at	A	A1TS	POPTR_0025s00750	POPTR_0025s00750 (11)	scaffold_25:412214-412769(+) (11)	NA	Q3EAR7	Probable glycosyltransferase At3g42180	AT3G42180.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr8g121620.1	Exostosin-like 	NA	NA	GO:0016021|integral to membrane
PtpAffx.214554.1.S1_at	A	A1TS	POPTR_0025s00760	POPTR_0025s00760 (10)	scaffold_25:415540-416130(+) (11)	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT5G20260.1	Exostosin family protein 	LOC_Os02g39960.1	"exostosin family protein, putative"	Medtr8g121610.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.214555.1.S1_at	A	A1TS	POPTR_0025s00760	POPTR_0025s00760 (11)	scaffold_25:417609-418153(+) (11)	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT5G20260.1	Exostosin family protein 	LOC_Os02g39960.1	"exostosin family protein, putative"	Medtr8g121610.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.214557.1.S1_at	A	A1TS	POPTR_0018s12590	POPTR_0018s12590 (11)	scaffold_18:13139365-13139924(+) (11)	NA	NA	NA	AT2G10950.1	BSD domain-containing protein 	LOC_Os05g43520.2	"BSD, putative, expressed"	Medtr8g121460.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214558.1.S1_at	A	A1TS	POPTR_0018s12600	POPTR_0018s12600 (11)	scaffold_18:13141288-13141814(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g55190.1	"SPOC domain containing protein, putative, expressed"	Medtr2g074250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214559.1.S1_at	A	A1TS	POPTR_0018s12605	POPTR_0018s12605 (11)	scaffold_18:13149227-13149432(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214560.1.S1_at	A	A1TS	POPTR_0018s12620	POPTR_0018s12620 (11)	scaffold_18:13153324-13154597(-) (11)	NA	Q9LFP1	Vesicle-associated membrane protein 713	AT5G11150.1	vesicle-associated membrane protein 713 	LOC_Os06g07780.1	"vesicle-associated membrane protein, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.214561.1.S1_at	A	A1MS	POPTR_0018s12640	POPTR_0018s12640 (9)	scaffold_18:13165259-13165751(-) (11)	NA	Q6NU53	CCR4-NOT transcription complex subunit 10-B	AT5G35430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g03600.1	"immunoglobulin/major histocompatibility complex, putative, expressed"	Medtr8g121410.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214562.1.S1_at	A	A1TS	POPTR_0018s12660	POPTR_0018s12660 (11)	scaffold_18:13176807-13177360(-) (11)	NA	Q6PR54	Telomere-associated protein RIF1	NA	NA	LOC_Os06g07620.1	expressed protein	Medtr8g121400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214563.1.S1_at	A	A1TS	POPTR_0018s12670	POPTR_0018s12670 (10)	scaffold_18:13192520-13192772(+) (10)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214564.1.S1_at	A	A1TA	POPTR_0018s12700	POPTR_0018s12700 (11)	scaffold_18:13217889-13218460(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214566.1.S1_at	A	A1TS	POPTR_0018s12750	POPTR_0018s12750 (11)	scaffold_18:13269322-13272910(-) (11)	NA	Q18779	UDP-sugar transporter sqv-7	AT4G32272.1	Nucleotide/sugar transporter family protein 	LOC_Os02g40030.1	"transporter family protein, putative, expressed"	Medtr1g014080.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.214567.1.S1_at	A	A1TS	POPTR_0018s12790	POPTR_0018s12790 (11)	scaffold_18:13312624-13313085(+) (11)	NA	Q38830	Auxin-responsive protein IAA12	AT1G04550.2	AUX/IAA transcriptional regulator family protein 	LOC_Os02g57250.1	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr3g137460.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.214567.1.S1_s_at	A	A1TS	POPTR_0018s12790	POPTR_0018s12790 (11)	scaffold_18:13312203-13312401(+) (11)	NA	Q38830	Auxin-responsive protein IAA12	AT1G04550.2	AUX/IAA transcriptional regulator family protein 	LOC_Os02g57250.1	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr3g137460.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.214568.1.S1_at	A	A1TS	POPTR_0018s12830	POPTR_0018s12830 (11)	scaffold_18:13352609-13352844(+) (11)	NA	Q8S9J8	Probable clathrin assembly protein At4g32285	AT4G32285.2	ENTH/ANTH/VHS superfamily protein 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr8g121020.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.214569.1.S1_at	A	A1TS	POPTR_0018s12850	POPTR_0018s12850 (11)	scaffold_18:13362381-13363954(-) (11)	NA	Q8K1X1	WD repeat-containing protein 11	AT3G33530.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g04440.2	"transducin family protein, putative, expressed"	Medtr8g120970.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214571.1.S1_at	A	A1TS	POPTR_0018s12880	POPTR_0018s12880 (11)	scaffold_18:13382930-13383499(+) (11)	NA	NA	NA	AT3G24150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214572.1.S1_at	A	A1TS	POPTR_0018s12940	POPTR_0018s12940 (11)	scaffold_18:13411903-13412651(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214573.1.S1_at	A	A2TS	POPTR_0018s13110	POPTR_0018s13110 (11)//POPTR_1923s00200 (11)	scaffold_18:13553742-13554478(-) (11)//scaffold_1923:3225-4089(-) (11)	NA	Q41142	Phospholipase D alpha 1	AT1G52570.1	phospholipase D alpha 2 	LOC_Os01g07760.2	"phospholipase D, putative, expressed"	Medtr2g126370.1	"C2; Peptidase, cysteine peptidase active site "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.214574.1.S1_at	A	A1TS	POPTR_0018s13120	POPTR_0018s13120 (11)	scaffold_18:13559508-13560851(-) (11)	NA	Q9NVG8	TBC1 domain family member 13	AT4G13730.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g68010.1	"TBC domain containing protein, expressed"	Medtr8g120430.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.214575.1.S1_at	A	A1TS	POPTR_0018s13130	POPTR_0018s13130 (11)	scaffold_18:13575791-13576392(+) (11)	NA	Q9XI33	Ethylene-responsive transcription factor WIN1	AT1G15360.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g10760.1	"AP2 domain containing protein, expressed"	Medtr8g120410.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.214577.1.S1_at	A	A1TS	POPTR_0018s13180	POPTR_0018s13180 (11)	scaffold_18:13606937-13607414(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214578.1.S1_at	A	A1TS	POPTR_0018s13210	POPTR_0018s13210 (11)	scaffold_18:13614275-13614479(-) (11)	NA	Q84TI7	Sodium transporter HKT1	AT4G10310.1	high-affinity K+ transporter 1 	LOC_Os02g07830.1	"OsHKT1;3 - Na+ transporter, expressed"	Medtr6g092400.1	Cation transporter 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	NA
PtpAffx.214579.1.S1_at	A	A1TS	POPTR_0018s13220	POPTR_0018s13220 (11)	scaffold_18:13623272-13624803(-) (11)	NA	NA	NA	AT3G10700.1	galacturonic acid kinase 	NA	NA	Medtr4g160950.2	Mevalonate and galactokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214580.1.S1_at	A	A1TS	POPTR_0018s13270	POPTR_0018s13270 (11)	scaffold_18:13653391-13653981(-) (11)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os02g41910.1	"OsFBO12 - F-box and other domain containing protein, expressed"	Medtr3g006070.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214582.1.S1_at	A	A1TS	POPTR_0018s13300	POPTR_0018s13300 (11)	scaffold_18:13678314-13679414(-) (11)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os04g46350.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g015030.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.214583.1.S1_at	A	A1TS	POPTR_0018s13310	POPTR_0018s13310 (11)	scaffold_18:13683779-13684298(-) (11)	NA	P82789	Defensin-like protein 181	AT5G38330.1	low-molecular-weight cysteine-rich 80 	NA	NA	Medtr2g042000.1	"Putative low-molecular-weight cysteine-rich protein LCR19 precursor, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214584.1.S1_at	A	A1TS	POPTR_0018s13320	POPTR_0018s13320 (11)	scaffold_18:13685691-13686278(-) (11)	NA	B3NU20	Lysine-specific demethylase NO66	NA	NA	LOC_Os04g56405.1	expressed protein	Medtr8g130390.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214585.1.S1_at	A	A1TS	POPTR_0018s13350	POPTR_0018s13350 (10)	scaffold_18:13699456-13700290(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214587.1.S1_at	A	A1TS	POPTR_0018s13370	POPTR_0018s13370 (11)	scaffold_18:13709002-13710003(+) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os06g51170.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr5g106730.2	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214588.1.S1_at	A	A1TS	POPTR_0018s13400	POPTR_0018s13400 (11)	scaffold_18:13726516-13727205(+) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214589.1.S1_at	A	A1TS	POPTR_0018s13410	POPTR_0018s13410 (11)	scaffold_18:13732470-13732861(+) (11)//scaffold_18:13799851-13800241(+) (9)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g130360.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0003676|nucleic acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0008270|zinc ion binding	NA
PtpAffx.214591.1.S1_s_at	A	A2TS	POPTR_0018s13520	POPTR_0018s13520 (11)//POPTR_0018s13440 (9)	scaffold_18:13762934-13768107(+) (10)//scaffold_18:13837974-13838153(+) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os06g51170.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214595.1.S1_s_at	A	A3TS	POPTR_0018s13420	POPTR_0018s13420 (11)//POPTR_0018s13450 (11)//POPTR_0018s13490 (9)	scaffold_18:13738251-13738741(-) (11)//scaffold_18:13775485-13775972(-) (11)//scaffold_18:13808056-13808534(-) (10)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.214596.1.S1_at	A	A1TS	POPTR_0018s13510	POPTR_0018s13510 (11)	scaffold_18:13829265-13829522(+) (11)	NA	P43293	Probable serine/threonine-protein kinase NAK	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os06g51170.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214597.1.S1_at	A	A1TS	POPTR_0018s13520	POPTR_0018s13520 (10)	scaffold_18:13838908-13839702(+) (10)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os06g51170.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214598.1.S1_at	A	A1MS	POPTR_0018s13560	POPTR_0018s13560 (10)	scaffold_18:13850362-13850901(-) (10)	NA	P43293	Probable serine/threonine-protein kinase NAK	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214599.1.S1_at	A	A1TS	POPTR_0018s13610	POPTR_0018s13610 (11)	scaffold_18:13883944-13885253(+) (11)	NA	Q9LU77	Auxin efflux carrier component 2	AT5G57090.1	Auxin efflux carrier family protein 	LOC_Os06g44970.1	"auxin efflux carrier component, putative, expressed"	Medtr8g130020.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.2146.1.A1_at	A	A1TS	POPTR_0018s03980	POPTR_0018s03980 (10)	scaffold_18:3416632-3418078(+) (10)	NA	C4LB24	Galactokinase	AT4G16130.1	arabinose kinase 	LOC_Os02g04840.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr1g010200.1	"Glycoside hydrolase, family 10; Galactokinase, glycosyltransferase N-terminal; "	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.214600.1.S1_at	A	A1TS	POPTR_0018s13640	POPTR_0018s13640 (11)	scaffold_18:13899924-13900512(-) (11)	NA	O61967	Protein lap1	AT2G19330.1	plant intracellular ras group-related LRR 6 	LOC_Os04g51580.2	"leucine rich repeat containing protein, expressed"	Medtr8g130010.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.214601.1.S1_at	A	A2TS	POPTR_0018s13680	POPTR_0018s13680 (10)//POPTR_0513s00210 (10)	scaffold_18:13971869-13972331(+) (11)//scaffold_513:8980-9409(+) (10)	NA	Q42191	Mitochondrial inner membrane protein OXA1	AT5G62050.1	homolog of yeast oxidase assembly 1 (OXA1) 	LOC_Os10g37690.1	"inner membrane protein, putative, expressed"	AC233677_14.1	60 kDa inner membrane insertion protein AC233677.2 80748-73714 E EGN_Mt090430 200	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.214602.1.S1_at	A	A1TS	POPTR_0018s13690	POPTR_0018s13690 (11)	scaffold_18:13978295-13980046(-) (11)	NA	Q14978	Nucleolar and coiled-body phosphoprotein 1	AT5G57120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink). "	LOC_Os12g41930.1	"SRP40, C-terminal domain containing protein, expressed"	Medtr8g129970.1	"Lissencephaly type-1-like homology motif; SRP40, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214603.1.S1_at	A	A1TS	POPTR_0018s13710	POPTR_0018s13710 (11)	scaffold_18:13989846-13989997(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214604.1.S1_at	A	A1TS	POPTR_0018s13720	POPTR_0018s13720 (11)	scaffold_18:13990490-13990981(-) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214605.1.S1_at	A	A1TS	POPTR_0018s13750	POPTR_0018s13750 (11)	scaffold_18:14013052-14013554(+) (11)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.214606.1.S1_at	A	A1TS	POPTR_0018s13760	POPTR_0018s13760 (11)	scaffold_18:14022330-14023384(+) (11)	NA	Q54GS1	Protein CLEC16A homolog	AT3G28430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155); Has 243 Blast hits to 233 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 	LOC_Os04g23210.1	expressed protein	Medtr8g129920.1	"Protein CLEC16A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214608.1.S1_at	A	A1TS	POPTR_0018s13780	POPTR_0018s13780 (11)	scaffold_18:14055269-14055528(+) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT3G23750.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr3g104610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.214609.1.S1_at	A	A1TS	POPTR_0018s13790	POPTR_0018s13790 (11)	scaffold_18:14057503-14059856(-) (11)	NA	Q9C512	"Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1"	AT1G51590.1	alpha-mannosidase 1 	LOC_Os04g51690.1	"glycosyl hydrolase family 47 domain contain protein, expressed"	Medtr2g024730.1	"Glycoside hydrolase, family 47 "	NA	"GO:0004571|""mannosyl-oligosaccharide 1,2-alpha-mannosidase activity""||GO:0005509|calcium ion binding"	GO:0016020|membrane
PtpAffx.21461.1.S1_at	A	A1TS	POPTR_0008s11550	POPTR_0008s11550 (10)	scaffold_8:7346663-7347184(+) (10)	NA	Q6NQK2	NAC domain-containing protein 8	AT1G25580.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g15690.1	"no apical meristem protein, putative, expressed"	Medtr5g069400.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.214610.1.S1_at	A	A1TS	POPTR_0018s13800	POPTR_0018s13800 (11)	scaffold_18:14064489-14065304(-) (11)	NA	NA	NA	AT4G26020.1	unknown protein; Has 17652 Blast hits to 12460 proteins in 982 species: Archae - 248; Bacteria - 2077; Metazoa - 7446; Fungi - 1455; Plants - 656; Viruses - 34; Other Eukaryotes - 5736 (source: NCBI BLink). 	LOC_Os02g05520.1	expressed protein	Medtr2g042820.1	"4/1 protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214611.1.S1_at	A	A1TS	POPTR_0018s13810	POPTR_0018s13810 (11)	scaffold_18:14075339-14075983(+) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.214614.1.S1_at	A	A1TA	POPTR_0018s13860	POPTR_0018s13860 (11)	scaffold_18:14148987-14149141(-) (11)	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23550.1	"basic helix-loop-helix family protein, putative, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.214615.1.S1_s_at	A	A1TS	POPTR_0018s13870	POPTR_0018s13870 (11)	scaffold_18:14161979-14162537(-) (11)	NA	Q9LL84	DNA ligase 4	AT5G57160.1	DNA ligase IV 	LOC_Os04g51700.1	"DNA ligase I, ATP-dependent family protein, expressed"	Medtr2g042770.1	"ATP-dependent DNA ligase; BRCT; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003910|DNA ligase (ATP) activity||GO:0005524|ATP binding	GO:0005622|intracellular
PtpAffx.214616.1.S1_at	A	A1TS	POPTR_0018s13900	POPTR_0018s13900 (9)	scaffold_18:14190895-14192000(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214617.1.S1_at	A	A1TS	POPTR_0018s13910	POPTR_0018s13910 (11)	scaffold_18:14200579-14203266(+) (11)	NA	NA	NA	AT2G19260.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g34720.2	"PHD-finger domain containing protein, putative, expressed"	Medtr3g149370.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214618.1.S1_at	A	A1TS	POPTR_0018s13920	POPTR_0018s13920 (11)	scaffold_18:14204549-14205403(-) (11)	NA	P48785	Pathogenesis-related homeodomain protein	AT4G29940.1	pathogenesis related homeodomain protein  A 	LOC_Os02g05450.1	"Homeobox domain containing protein, expressed"	Medtr2g042720.1	"Homeobox; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.214619.1.S1_s_at	A	A1TS	POPTR_0018s13970	POPTR_0018s13970 (11)	scaffold_18:14237082-14238278(+) (11)	NA	Q9LVD8	Putative clathrin assembly protein At5g57200	AT5G57200.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr2g042690.1	"Carbamoyl-phosphate synthase L chain, ATP-binding; ENTH/VHS; ANTH; "	NA	GO:0005543|phospholipid binding	NA
PtpAffx.214620.1.S1_at	A	A1MS	POPTR_0018s14010	POPTR_0018s14010 (10)	scaffold_18:14261719-14262320(-) (10)	NA	Q9LUL5	Pentatricopeptide repeat-containing protein At3g14330	AT3G14330.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g30710.1	"pentatricopeptide, putative, expressed"	Medtr8g029460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214621.1.S1_at	A	A1TS	POPTR_0018s14060	POPTR_0018s14060 (11)	scaffold_18:14311113-14311741(+) (11)	NA	Q9LVD3	"Pentatricopeptide repeat-containing protein At5g57250, mitochondrial"	AT5G57250.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g15840.1	PPR repeat containing protein	Medtr2g042470.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214622.1.S1_at	A	A1TS	POPTR_0018s14080	POPTR_0018s14080 (11)	scaffold_18:14340847-14341666(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214623.1.S1_at	A	A1TS	POPTR_0018s14090	POPTR_0018s14090 (10)	scaffold_18:14345286-14346072(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214625.1.S1_at	A	A1TS	POPTR_0018s14120	POPTR_0018s14120 (11)	scaffold_18:14389465-14389835(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214626.1.S1_at	A	A1MS	POPTR_0018s14130	POPTR_0018s14130 (10)	scaffold_18:14390489-14392075(-) (10)	POPTR_0516s00220 (7)	NA	NA	AT2G19080.1	metaxin-related 	LOC_Os06g07160.1	expressed protein	Medtr2g041740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214629.1.S1_s_at	A	A1TS	POPTR_0015s05760	POPTR_0015s05760 (11)	scaffold_15:6116334-6116814(-) (11)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g49830.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.214630.1.S1_s_at	A	A2TS	POPTR_0004s24140	POPTR_0004s24140 (11)//POPTR_0004s24145 (11)	scaffold_4:22873794-22874623(-) (11)//scaffold_4:22882178-22883003(-) (11)	NA	Q8VZU9	Derlin-1	AT4G29330.1	DERLIN-1 	LOC_Os05g09550.1	"Der1-like family domain containing protein, expressed"	Medtr4g160130.1	Der1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214644.1.S1_at	A	A1TS	POPTR_0016s01230	POPTR_0016s01230 (10)	scaffold_16:523632-524093(+) (11)	NA	P54928	Inositol monophosphatase 3	AT3G02870.1	Inositol monophosphatase family protein 	LOC_Os03g39000.2	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.214645.1.S1_s_at	A	A1TS	POPTR_0011s09450	POPTR_0011s09450 (11)	scaffold_11:11712801-11714342(+) (11)	POPTR_0001s36900 (6)	Q6H6V4	Auxin response factor 6	AT1G30330.1	auxin response factor 6 	LOC_Os02g06910.1	"auxin response factor 6, putative, expressed"	Medtr2g022250.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.214646.1.S1_s_at	A	A1TS	POPTR_0046s00340	POPTR_0046s00340 (11)	scaffold_46:145130-145219(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G28890.2	receptor like protein 43 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094030.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.214652.1.S1_s_at	A	A4TS	POPTR_0003s18400	POPTR_0097s00290 (11)//POPTR_0003s18410 (11)//POPTR_0003s18400 (11)//POPTR_0075s00210 (11)	scaffold_3:17493222-17493535(+) (11)//scaffold_3:17499326-17499642(+) (11)//scaffold_75:47121-47437(+) (11)//scaffold_97:61753-62066(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os02g56420.1	"OsWAK23 - OsWAK short gene, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214653.1.S1_s_at	A	A1TS	POPTR_0015s03850	POPTR_0015s03850 (11)	scaffold_15:3760934-3761510(+) (11)	NA	NA	NA	AT1G68390.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g52120.1	"DNA binding protein, putative, expressed"	Medtr5g068010.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.214655.1.S1_s_at	A	A2TS	POPTR_0008s18610	POPTR_0008s18610 (11)//POPTR_0008s18660 (11)	scaffold_8:12547263-12547421(+) (11)//scaffold_8:12628285-12628443(+) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT2G25470.1	receptor like protein 21 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	AC235756_17.1	"Leucine-rich repeat, typical subtype AC235756.1 127596-123999 E EGN_Mt090430 200"	NA	GO:0005515|protein binding	NA
PtpAffx.214658.1.S1_s_at	A	A1TS	POPTR_0016s05690	POPTR_0016s05690 (11)	scaffold_16:3628169-3628380(-) (11)	NA	Q8RWI9	ABC transporter G family member 15	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os05g13520.1	"white-brown complex homolog protein 12, putative, expressed"	Medtr4g104580.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.214661.1.S1_at	A	A2TS	POPTR_0001s42860	POPTR_0001s42860 (10)//POPTR_0001s42850 (9)	scaffold_1:42882016-42882470(-) (10)//scaffold_1:42910878-42911435(-) (10)	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os04g40440.1	expressed protein	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.214669.1.S1_at	A	A1TS	POPTR_0077s00240	POPTR_0077s00240 (11)	scaffold_77:74994-75434(-) (11)	NA	Q40392	TMV resistance protein N	AT4G19510.1	Disease resistance protein (TIR-NBS-LRR class) 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr8g021220.1	TIR; Disease resistance protein; Ribosomal protein S19e 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.214670.1.S1_s_at	A	A4TS	POPTR_0001s39390	POPTR_0001s39390 (11)//POPTR_0084s00240 (11)//POPTR_0001s39420 (11)//POPTR_0001s39450 (11)	scaffold_1:38554854-38555061(+) (11)//scaffold_1:38594792-38595005(+) (11)//scaffold_1:38626712-38626925(+) (11)//scaffold_84:45788-46001(+) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.214672.1.S1_at	A	A1MS	POPTR_0003s04350	POPTR_0003s04350 (11)	scaffold_3:5070083-5070150(+) (11)	NA	O59797	Putative nucleosome assembly protein C364.06	AT2G19480.3	nucleosome assembly protein 1;2 	LOC_Os05g46230.1	"NAP domain containing protein, putative, expressed"	Medtr2g046220.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.214673.1.S1_at	A	A1TS	POPTR_0008s08930	POPTR_0008s08930 (11)	scaffold_8:5546249-5546794(-) (11)	NA	NA	NA	AT1G26761.1	Arabinanase/levansucrase/invertase 	LOC_Os08g33650.2	"SET domain-containing protein, putative, expressed"	Medtr5g045190.1	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214674.1.S1_s_at	A	A1TS	POPTR_0016s02700	POPTR_0016s02700 (11)	scaffold_16:1341088-1341201(+) (11)	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214675.1.S1_a_at	A	A1TS	POPTR_0001s46420	POPTR_0001s46420 (11)	scaffold_1:46814603-46814804(-) (11)	NA	Q9SA76	"Pentatricopeptide repeat-containing protein At1g30610, chloroplastic"	AT1G30610.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os01g48380.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g101620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214675.1.S1_at	A	A1TS	POPTR_0001s46420	POPTR_0001s46420 (11)	scaffold_1:46814265-46814772(-) (11)	NA	Q9SA76	"Pentatricopeptide repeat-containing protein At1g30610, chloroplastic"	AT1G30610.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os01g48380.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g101620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214676.1.S1_at	A	A1TS	POPTR_0035s00390	POPTR_0035s00390 (11)	scaffold_17:13975586-13975656(+) (11)//scaffold_35:224453-224523(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214676.1.S1_x_at	A	A1TS	POPTR_0035s00390	POPTR_0035s00390 (11)	scaffold_35:224402-224523(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214679.1.S1_at	A	A2TS	POPTR_0015s00220	POPTR_0015s00220 (10)//POPTR_0015s02000 (10)	scaffold_15:51609-52419(+) (11)//scaffold_15:1389016-1389826(-) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.1	Protein kinase superfamily protein 	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr1g034440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214681.1.S1_s_at	A	A1TS	POPTR_0001s46040	POPTR_0001s46040 (10)	scaffold_1:46533598-46534041(+) (10)	NA	NA	NA	AT1G20925.1	Auxin efflux carrier family protein 	LOC_Os09g31478.2	"auxin efflux carrier component, putative, expressed"	Medtr8g087050.1	Auxin Efflux Carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214683.1.S1_s_at	A	A1TS	POPTR_0712s00200	POPTR_0712s00200 (11)	scaffold_712:2467-3040(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214689.1.S1_at	A	A2TS	POPTR_0004s08280	POPTR_0004s08290 (11)//POPTR_0004s08280 (11)	scaffold_4:6817091-6817189(-) (11)//scaffold_4:6824659-6824757(+) (11)	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.214689.1.S1_s_at	A	A2TS	POPTR_0004s08280	POPTR_0004s08290 (11)//POPTR_0004s08280 (11)	scaffold_4:6816781-6817089(-) (11)//scaffold_4:6824759-6825067(+) (11)	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.214692.1.S1_at	A	A1TS	POPTR_0017s11110	POPTR_0017s11110 (11)	scaffold_17:10779900-10780132(-) (11)	NA	NA	NA	AT3G28460.1	methyltransferases 	NA	NA	Medtr6g010050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214700.1.S1_at	A	A1TS	POPTR_0014s06100	POPTR_0014s06100 (11)	scaffold_14:4584706-4585219(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214701.1.S1_s_at	A	A4MS	POPTR_0014s06050	POPTR_0014s06050 (11)//POPTR_0014s06115 (11)//POPTR_0014s06120 (11)//POPTR_0014s06090 (9)	scaffold_14:4523893-4524010(+) (11)//scaffold_14:4570047-4570164(+) (9)//scaffold_14:4584556-4594427(+) (11)//scaffold_14:4606084-4606200(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214703.1.S1_s_at	A	A1TS	POPTR_0004s20630	POPTR_0004s20630 (11)	scaffold_4:20099988-20100459(-) (11)	NA	Q18411	Nucleoside-triphosphatase ntp-1	AT2G02970.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os08g33850.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g044090.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.214705.1.S1_s_at	A	A5TS	POPTR_0006s18830	POPTR_0006s18880 (11)//POPTR_0006s18830 (11)//POPTR_0089s00200 (11)//POPTR_0637s00200 (11)//POPTR_0496s00200 (10)	scaffold_496:9050-9518(-) (10)//scaffold_6:17535837-17536305(+) (11)//scaffold_6:17623886-17624354(+) (11)//scaffold_637:9401-9869(+) (11)//scaffold_89:23227-23695(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.214707.1.S1_at	A	A2MS	POPTR_0185s00210	POPTR_0185s00210 (10)//POPTR_0005s06300 (9)	scaffold_185:28128-29463(-) (10)//scaffold_5:4148721-4149857(-) (9)	POPTR_0185s00200 (6)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr3g005310.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.214708.1.S1_at	A	A2TS	POPTR_0185s00210	POPTR_0185s00210 (11)//POPTR_0005s06300 (10)	scaffold_185:1720-2088(-) (10)//scaffold_185:21170-21538(-) (11)//scaffold_5:4142761-4143129(-) (10)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr3g005310.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.214709.1.S1_at	A	A1TS	POPTR_0185s00200	POPTR_0185s00200 (11)	scaffold_185:12452-12494(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.214710.1.S1_s_at	A	A1TS	POPTR_0019s09760	POPTR_0019s09760 (11)	scaffold_19:11360714-11361080(+) (11)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.214711.1.S1_s_at	A	A1TS	POPTR_0008s20050	POPTR_0008s20050 (11)	scaffold_8:13865111-13865240(+) (11)//scaffold_8:13865243-13865372(+) (11)//scaffold_8:13865415-13865537(+) (11)//scaffold_8:13865547-13865662(+) (10)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.214712.1.S1_at	A	A1TS	POPTR_0004s07550	POPTR_0004s07550 (11)	scaffold_4:6205235-6206601(+) (11)	NA	NA	NA	AT5G02520.1	CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). 	LOC_Os01g34610.1	expressed protein	Medtr5g040960.1	SANT associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214715.1.S1_s_at	A	A1TS	POPTR_0030s00360	POPTR_0030s00360 (11)	scaffold_30:133067-133524(-) (11)	NA	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os03g53650.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.214717.1.S1_s_at	A	A3TS	POPTR_0015s03880	POPTR_0160s00240 (11)//POPTR_0373s00210 (11)//POPTR_0015s03880 (11)	scaffold_15:3795872-3795967(-) (11)//scaffold_160:32259-32354(-) (11)//scaffold_373:9743-9838(-) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.2	Protein kinase superfamily protein 	LOC_Os01g04409.1	"OsWAK1 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.2	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214724.1.S1_s_at	A	A1TS	POPTR_0019s08160	POPTR_0019s08160 (11)	scaffold_19:9606967-9608031(-) (11)	NA	P37890	Serine carboxypeptidase 1	AT4G12910.1	serine carboxypeptidase-like 20 	LOC_Os12g15470.2	"OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr7g089840.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.214727.1.S1_at	A	A1TS	POPTR_0003s05920	POPTR_0003s05920 (10)	scaffold_3:7291209-7291486(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.214729.1.S1_at	A	A1TS	POPTR_0017s06300	POPTR_0017s06300 (11)	scaffold_17:4836650-4836962(+) (11)	NA	O22727	Probable disease resistance protein At1g61190	AT1G61190.1	LRR and NB-ARC domains-containing disease resistance protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214730.1.S1_at	A	A1TS	POPTR_0017s06290	POPTR_0017s06290 (11)	scaffold_17:4827590-4836480(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214731.1.S1_x_at	A	A1TS	POPTR_0018s04320	POPTR_0018s04320 (11)	scaffold_18:3646915-3646953(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214736.1.S1_s_at	A	A1TS	POPTR_0019s04820	POPTR_0019s04820 (11)	scaffold_19:5042870-5043704(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT3G04030.3	Homeodomain-like superfamily protein 	LOC_Os03g20900.1	"Myb transcription factor, putative, expressed"	Medtr2g107820.1	"Peptidase M22, glycoprotease; Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214737.1.S1_at	A	A1TS	POPTR_0411s00200	POPTR_0411s00200 (11)	scaffold_411:294-841(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214738.1.S1_s_at	A	A1TS	POPTR_0411s00210	POPTR_0411s00210 (10)	scaffold_411:6702-6876(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214739.1.S1_at	A	A1TS	POPTR_0012s05120	POPTR_0012s05120 (11)	scaffold_12:4607668-4607741(+) (11)//scaffold_2046:595-655(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214740.1.S1_s_at	A	A2TS	POPTR_0004s15900	POPTR_0004s15900 (11)//POPTR_0004s15960 (9)	scaffold_4:16411677-16411890(+) (11)//scaffold_4:16445441-16445654(+) (9)	NA	Q8VZ80	Polyol transporter 5	AT3G18830.1	polyol/monosaccharide transporter 5 	LOC_Os07g39350.1	"transporter family protein, putative, expressed"	Medtr3g159730.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.214741.1.S1_s_at	A	A1TS	POPTR_0015s04000	POPTR_0015s04000 (11)	scaffold_15:3899379-3899532(+) (11)//scaffold_15:3938629-3938782(+) (11)	NA	Q40392	TMV resistance protein N	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.214745.1.S1_at	A	A1TS	POPTR_0027s00390	POPTR_0027s00390 (11)	scaffold_27:191512-191839(+) (11)	POPTR_0003s02260 (8)	NA	NA	AT2G26590.3	regulatory particle non-ATPase 13 	LOC_Os05g51640.2	"adhesion regulating molecule family, putative, expressed"	Medtr4g161200.1	Adhesion regulating molecule 	NA	NA	GO:0005737|cytoplasm||GO:0005634|nucleus
PtpAffx.214746.1.S1_s_at	A	A1MS	POPTR_0003s15190	POPTR_0003s15190 (11)	scaffold_3:15045006-15051673(-) (11)	POPTR_0003s15180 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214748.1.S1_x_at	A	A1TS	POPTR_0018s14180	POPTR_0018s14180 (11)	scaffold_18:14472845-14473692(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os01g41770.1	"leucine rich repeat protein, putative, expressed"	Medtr3g166620.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.214762.1.S1_s_at	A	A1TS	POPTR_0001s09220	POPTR_0001s09220 (11)	scaffold_1:7067465-7067689(+) (11)	NA	Q9SH30	Putative copper-transporting ATPase 3	AT1G63440.1	heavy metal atpase 5 	LOC_Os04g46940.1	"copper-transporting ATPase 3, putative, expressed"	Medtr5g010540.1	"ATPase, E1-E2 type; Heavy metal transport/detoxification protein "	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.214763.1.S1_at	A	A1TS	POPTR_0012s10960	POPTR_0012s10960 (11)	scaffold_12:11603899-11603987(+) (11)	NA	NA	NA	AT4G23490.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr5g010170.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214763.1.S1_s_at	A	A1TS	POPTR_0012s10960	POPTR_0012s10960 (11)	scaffold_12:11603977-11604370(+) (11)	NA	NA	NA	AT4G23490.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr5g010170.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214767.1.S1_at	A	A1MS	POPTR_0006s28600	POPTR_0006s28600 (10)	scaffold_6:26249170-26249361(-) (10)	NA	Q9SJA4	Probable cyclic nucleotide-gated ion channel 14	AT2G24610.1	cyclic nucleotide-gated channel 14 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214767.1.S1_x_at	A	A1MS	POPTR_0006s28600	POPTR_0006s28600 (11)	scaffold_6:26249170-26249441(-) (11)	NA	Q9SJA4	Probable cyclic nucleotide-gated ion channel 14	AT2G24610.1	cyclic nucleotide-gated channel 14 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214769.1.S1_at	A	A2TS	POPTR_0013s09940	POPTR_0013s09940 (11)//POPTR_0013s10990 (11)	scaffold_13:9919718-9920108(+) (11)//scaffold_13:11669388-11669779(-) (11)	NA	Q94K73	"Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial"	AT3G58140.1	phenylalanyl-tRNA synthetase class IIc family protein 	LOC_Os12g34860.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr7g094230.1	"Phenylalanyl-tRNA synthetase, mitochondrial; Ribosomal protein L20; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0008033|tRNA processing||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.214769.1.S1_s_at	A	A2TS	POPTR_0013s09940	POPTR_0013s09940 (11)//POPTR_0013s10990 (11)	scaffold_13:9919108-9919903(+) (11)//scaffold_13:11669595-11670391(-) (11)	NA	Q94K73	"Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial"	AT3G58140.1	phenylalanyl-tRNA synthetase class IIc family protein 	LOC_Os12g34860.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr7g094230.1	"Phenylalanyl-tRNA synthetase, mitochondrial; Ribosomal protein L20; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0008033|tRNA processing||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.214772.1.S1_at	A	A1TS	POPTR_0017s13310	POPTR_0017s13310 (10)	scaffold_17:13469948-13470645(+) (10)	NA	Q94KT8	Protein COBRA	AT5G60920.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os05g32110.1	"COBRA, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214773.1.S1_at	A	A1TS	POPTR_0019s12990	POPTR_0019s12990 (11)	scaffold_19:13676634-13677007(+) (9)//scaffold_19:14003955-14004328(+) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g35254.1	"transposon protein, putative, CACTA, En/Spm sub-class"	Medtr2g121090.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.214780.1.S1_at	A	A1TS	POPTR_0009s16600	POPTR_0009s16600 (10)	scaffold_9:12583794-12585186(-) (10)	NA	NA	NA	AT5G22450.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73620.1	expressed protein	Medtr4g070070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214782.1.S1_s_at	A	A2TS	POPTR_0017s03655	POPTR_0017s03655 (11)//POPTR_0017s03790 (11)	scaffold_17:2713088-2713658(+) (11)//scaffold_17:2804102-2804669(+) (11)	POPTR_0017s00220 (6)	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214783.1.S1_s_at	A	A1TS	POPTR_0017s03660	POPTR_0017s03660 (11)	scaffold_17:2715014-2715136(+) (11)//scaffold_17:2805964-2806086(+) (11)	POPTR_0017s03800 (6)	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.214786.1.S1_s_at	A	A1TS	POPTR_0019s06220	POPTR_0019s06220 (11)	scaffold_19:6729499-6729802(-) (9)//scaffold_19:6833586-6833888(+) (11)	POPTR_0019s06170 (8)//POPTR_0019s06190 (7)	P59287	"Casbene synthase, chloroplastic"	AT5G23960.1	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.214790.1.S1_s_at	A	A1TS	POPTR_0011s17050	POPTR_0011s17050 (11)	scaffold_11:18693997-18694035(+) (11)	NA	Q9FF99	Probable amino acid permease 7	AT5G23810.1	amino acid permease 7 	LOC_Os04g39489.1	"amino acid transporter, putative, expressed"	CU013523_1.1	"Amino acid transporter, transmembrane CU013523.3 15682-12598 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214793.1.S1_at	A	A1MS	POPTR_0012s10110	POPTR_0012s10110 (11)	scaffold_12:10949230-10949419(-) (11)	NA	P95245	Phospholipase C 3	AT3G48610.1	non-specific phospholipase C6 	LOC_Os01g72520.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.214794.1.S1_x_at	A	A1MS	POPTR_0012s10090	POPTR_0012s10090 (9)	scaffold_12:10943639-10944297(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214795.1.S1_at	A	A1MS	POPTR_0110s00200	POPTR_0110s00200 (11)	scaffold_110:6836-7063(-) (11)	POPTR_0006s16280 (8)	Q8VXZ0	"Nudix hydrolase 20, chloroplastic"	AT5G19460.1	nudix hydrolase homolog 20 	LOC_Os09g15340.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.214797.1.S1_at	A	A1MS	POPTR_0006s05160	POPTR_0006s05160 (11)	scaffold_6:3609251-3609352(-) (11)	NA	P72749	GTP-binding protein TypA/BipA homolog	AT5G13650.1	elongation factor family protein 	LOC_Os02g18450.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.214797.1.S1_s_at	A	A1TS	POPTR_0006s05160	POPTR_0006s05160 (11)	scaffold_6:3609379-3610492(-) (11)	NA	P72749	GTP-binding protein TypA/BipA homolog	AT5G13650.1	elongation factor family protein 	LOC_Os02g18450.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.214799.1.S1_s_at	A	A1TS	POPTR_0229s00240	POPTR_0229s00240 (11)	scaffold_229:19443-19701(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G71140.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.214800.1.S1_at	A	A2MS	POPTR_0229s00240	POPTR_0793s00200 (11)//POPTR_0229s00240 (11)	scaffold_229:19212-19256(+) (11)//scaffold_793:7566-7610(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G71140.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.214803.1.S1_s_at	A	A1TS	POPTR_0001s40630	POPTR_0001s40630 (11)	scaffold_1:40190030-40190410(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214804.1.S1_at	A	A1TS	POPTR_0001s40650	POPTR_0001s40650 (11)	scaffold_1:40226220-40226638(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214805.1.S1_at	A	A1TS	POPTR_0001s40680	POPTR_0001s40680 (11)	scaffold_1:40267935-40268316(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G53950.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g23650.1	"no apical meristem protein, putative, expressed"	Medtr1g009870.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.214805.1.S1_x_at	A	A1TS	POPTR_0001s40680	POPTR_0001s40680 (11)	scaffold_1:40267882-40268316(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G53950.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g23650.1	"no apical meristem protein, putative, expressed"	Medtr1g009870.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.214806.1.S1_at	A	A1TS	POPTR_0001s40690	POPTR_0001s40690 (11)	scaffold_1:40288086-40288250(+) (11)	NA	Q16401	26S proteasome non-ATPase regulatory subunit 5	AT3G15180.1	ARM repeat superfamily protein 	LOC_Os05g48340.1	"proteasome-related, putative, expressed"	Medtr8g071250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214807.1.S1_at	A	A1TS	POPTR_0001s40720	POPTR_0001s40720 (11)	scaffold_1:40305283-40306408(+) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214808.1.S1_at	A	A1TS	POPTR_0001s40740	POPTR_0001s40740 (11)	scaffold_1:40317310-40317982(-) (11)	NA	NA	NA	AT5G53930.1	unknown protein; LOCATED IN: chloroplast; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214809.1.S1_at	A	A1TS	POPTR_0001s40760	POPTR_0001s40760 (11)	scaffold_1:40340387-40340860(-) (11)	NA	Q9ZR14	Putative B3 domain-containing protein At4g03170	AT4G03170.1	AP2/B3-like transcriptional factor family protein 	NA	NA	Medtr3g005470.1	"DNA binding, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.214810.1.S1_at	A	A1TS	POPTR_0001s40780	POPTR_0001s40780 (11)	scaffold_1:40366498-40366984(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g021790.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214811.1.S1_at	A	A1TS	POPTR_0001s40790	POPTR_0001s40790 (11)	scaffold_1:40376350-40376659(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g20650.2	"OsFBX323 - F-box domain containing protein, expressed"	Medtr8g112910.3	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214812.1.S1_at	A	A1TS	POPTR_0001s40800	POPTR_0001s40800 (11)	scaffold_1:40403936-40405519(-) (11)	NA	O61122	Serine/threonine-protein kinase svkA	AT3G15220.1	Protein kinase superfamily protein 	LOC_Os07g32400.1	"STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214813.1.S1_at	A	A1TS	POPTR_0001s40830	POPTR_0001s40830 (10)	scaffold_1:40439283-40439789(+) (10)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT5G53900.2	Serine/threonine-protein kinase WNK (With No Lysine)-related 	LOC_Os11g25920.1	"transcription factor-related, putative, expressed"	Medtr1g023870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214814.1.S1_at	A	A1TS	POPTR_0001s40880	POPTR_0001s40880 (9)	scaffold_1:40469898-40470396(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214814.1.S1_s_at	A	A1TS	POPTR_0001s40880	POPTR_0001s40880 (11)	scaffold_1:40470064-40470507(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214815.1.S1_at	A	A1TS	POPTR_0001s40900	POPTR_0001s40900 (11)	scaffold_1:40474858-40475420(-) (11)	NA	Q9FN37	Phytosulfokine receptor 2	AT5G53890.1	phytosylfokine-alpha receptor 2 	LOC_Os07g01710.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.214818.1.S1_s_at	A	A2TS	POPTR_0001s41000	POPTR_0001s41000 (11)//POPTR_0013s03600 (11)	scaffold_1:40621348-40621422(+) (11)//scaffold_13:2288353-2288427(-) (11)	NA	NA	NA	AT1G53130.1	Stigma-specific Stig1 family protein 	NA	NA	Medtr2g100500.1	Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214820.1.S1_at	A	A1TS	POPTR_0001s41035	POPTR_0001s41035 (11)	scaffold_1:40683443-40683669(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214821.1.S1_at	A	A1TS	POPTR_0001s41050	POPTR_0001s41050 (11)	scaffold_1:40721628-40723021(+) (11)	NA	NA	NA	AT1G53040.2	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g100710.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214822.1.S1_at	A	A1TS	POPTR_0001s41060	POPTR_0001s41060 (11)	scaffold_1:40725557-40725951(+) (11)	NA	NA	NA	AT1G53035.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214823.1.S1_at	A	A1TS	POPTR_0001s41100	POPTR_0001s41100 (11)	scaffold_1:40758655-40759606(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214824.1.S1_at	A	A1TS	POPTR_0001s41110	POPTR_0001s41110 (11)	scaffold_1:40768323-40768849(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os01g06920.1	"resistance protein SlVe1 precursor, putative, expressed"	Medtr7g008860.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.214825.1.S1_at	A	A1TS	POPTR_0001s41120	POPTR_0001s41120 (11)	scaffold_1:40774679-40775087(-) (11)	NA	P93823	RING-H2 finger protein ATL1	AT1G04360.1	RING/U-box superfamily protein 	LOC_Os09g37050.1	"RING-H2 finger protein ATL2B, putative, expressed"	Medtr8g078100.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214825.1.S1_s_at	A	A1TS	POPTR_0001s41120	POPTR_0001s41120 (11)	scaffold_1:40774764-40775109(-) (11)	NA	P93823	RING-H2 finger protein ATL1	AT1G04360.1	RING/U-box superfamily protein 	LOC_Os09g37050.1	"RING-H2 finger protein ATL2B, putative, expressed"	Medtr8g078100.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214826.1.S1_at	A	A1TS	POPTR_0001s41130	POPTR_0001s41130 (11)	scaffold_1:40776873-40777393(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214827.1.S1_at	A	A1TS	POPTR_0001s41140	POPTR_0001s41140 (11)	scaffold_1:40782129-40783532(+) (11)	NA	Q68ED3	PAP-associated domain-containing protein 5	AT5G53770.1	Nucleotidyltransferase family protein 	LOC_Os01g48210.1	"PAP/25A associated domain containing protein, putative, expressed"	NA	NA	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.214829.1.S1_at	A	A1TS	POPTR_0001s41210	POPTR_0001s41210 (11)	scaffold_1:40849859-40850025(+) (11)	NA	Q9LDJ3	Expansin-A12	AT3G15370.1	expansin 12 	LOC_Os03g06020.1	"expansin precursor, putative, expressed"	Medtr5g083140.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214831.1.S1_at	A	A1TS	POPTR_0001s41220	POPTR_0001s41220 (11)	scaffold_1:40856412-40858077(-) (11)	NA	NA	NA	AT3G15390.1	silencing defective 5 	LOC_Os02g42670.1	"DUF1771 domain containing protein, putative, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214832.1.S1_at	A	A1TS	POPTR_0001s41270	POPTR_0001s41270 (11)	scaffold_1:40886864-40887170(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214833.1.S1_at	A	A1TS	POPTR_0001s41310	POPTR_0001s41310 (10)	scaffold_1:40924563-40925390(-) (10)	NA	NA	NA	AT3G15420.1	"Transcription factor TFIIIC, tau55-related protein "	LOC_Os04g44770.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214834.1.S1_at	A	A1TS	POPTR_0001s41360	POPTR_0001s41360 (11)	scaffold_1:40993570-40994600(+) (11)	NA	Q9JJK2	LanC-like protein 2	AT1G52920.1	G protein coupled receptor 	LOC_Os10g35480.2	"lanC-like protein 2, putative, expressed"	Medtr3g102050.1	Lanthionine synthetase C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214835.1.S1_s_at	A	A1TS	POPTR_0001s41420	POPTR_0001s41420 (11)	scaffold_1:41027857-41027910(-) (11)	NA	NA	NA	AT4G27430.2	COP1-interacting protein 7 	LOC_Os03g64320.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214835.1.S1_x_at	A	A1TS	POPTR_0001s41420	POPTR_0001s41420 (11)	scaffold_1:41027842-41028308(-) (11)	NA	NA	NA	AT4G27430.2	COP1-interacting protein 7 	LOC_Os03g64320.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214836.1.S1_at	A	A1TS	POPTR_0001s41440	POPTR_0001s41440 (11)	scaffold_1:41064017-41064423(-) (11)	NA	Q7XSK0	Beta-glucosidase 18	AT4G21760.1	beta-glucosidase 47 	LOC_Os04g43410.1	"Os4bglu18 - monolignol beta-glucoside homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.214837.1.S1_at	A	A1TS	POPTR_0001s41450	POPTR_0001s41450 (11)	scaffold_1:41075478-41075935(+) (11)	NA	Q9SZR9	ABC transporter G family member 9	AT4G27420.1	ABC-2 type transporter family protein 	LOC_Os08g07010.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.214838.1.S1_at	A	A1TS	POPTR_0001s41480	POPTR_0001s41480 (11)	scaffold_1:41115980-41116325(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214839.1.S1_at	A	A1TS	POPTR_0001s41500	POPTR_0001s41500 (11)	scaffold_1:41124623-41124798(+) (11)	NA	NA	NA	AT3G15518.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214840.1.S1_s_at	A	A1TS	POPTR_0004s11210	POPTR_0004s11210 (11)	scaffold_4:9830161-9830334(-) (11)	NA	Q9LFV3	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730	AT5G15730.2	Protein kinase superfamily protein 	LOC_Os06g17285.2	"protein kinase, putative, expressed"	Medtr2g096390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214846.1.S1_x_at	A	A1TS	POPTR_0013s10740	POPTR_0013s10740 (11)	scaffold_13:11065091-11065695(-) (11)	POPTR_0035s00335 (6)	Q40392	TMV resistance protein N	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.214851.1.S1_at	A	A1TS	POPTR_0001s33450	POPTR_0001s33450 (11)	scaffold_1:31651585-31652097(-) (11)	NA	Q9FMU2	Pentatricopeptide repeat-containing protein At5g14080	AT5G14080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g56960.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g007390.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214853.1.S1_at	A	A2TS	POPTR_0016s04750	POPTR_0016s04750 (11)//POPTR_0016s04350 (10)	scaffold_16:2542620-2542761(+) (10)//scaffold_16:2838049-2838190(-) (11)	NA	NA	NA	AT2G44370.1	Cysteine/Histidine-rich C1 domain family protein 	NA	NA	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214855.1.S1_x_at	A	A1MS	POPTR_0003s04940	POPTR_0003s04940 (9)	scaffold_3:6034394-6034975(-) (10)	NA	Q9D8Z1	Activating signal cointegrator 1 complex subunit 1	AT3G16230.3	Predicted eukaryotic LigT 	LOC_Os01g13100.1	"KH domain containing protein, putative, expressed"	Medtr2g122410.1	Appr>p cyclic nucleotide phosphodiesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214856.1.S1_s_at	A	A2TS	POPTR_0004s17710	POPTR_0004s17710 (11)//POPTR_0320s00210 (11)	scaffold_320:10793-11156(-) (11)//scaffold_4:17796371-17796734(+) (11)	NA	Q9URY4	Putative amidase C869.01	AT4G34880.1	Amidase family protein 	LOC_Os04g10530.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.214857.1.S1_at	A	A1TS	POPTR_0008s03340	POPTR_0008s03340 (11)	scaffold_8:1774646-1774695(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g42520.1	"receptor kinase, putative"	Medtr8g078000.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214859.1.S1_a_at	A	A1TS	POPTR_0524s00210	POPTR_0524s00210 (9)	scaffold_524:8806-9136(+) (9)//scaffold_524:8858-9531(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21486.1.S1_x_at	A	A1TS	POPTR_0002s09480	POPTR_0002s09480 (10)	scaffold_2:6770313-6770805(+) (10)	NA	Q8H1E4	Ethylene-responsive transcription factor RAP2-4	AT1G78080.1	related to AP2 4 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	CU651566_18.1	Pathogenesis-related transcriptional factor and ERF CU651566.9 95071-96871 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.21486.2.S1_a_at	A	A1TS	POPTR_0002s09480	POPTR_0002s09480 (11)	scaffold_2:6770167-6770805(+) (11)	NA	Q8H1E4	Ethylene-responsive transcription factor RAP2-4	AT1G78080.1	related to AP2 4 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	CU651566_18.1	Pathogenesis-related transcriptional factor and ERF CU651566.9 95071-96871 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.214860.1.S1_s_at	A	A1TS	POPTR_0006s07370	POPTR_0006s07370 (11)	scaffold_6:5310434-5310883(-) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.214863.1.S1_x_at	A	A1TS	POPTR_0005s10870	POPTR_0005s10870 (11)	scaffold_5:7824013-7824196(-) (11)	NA	NA	NA	AT5G10490.3	MSCS-like 2 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214864.1.S1_x_at	A	A1TS	POPTR_0019s05400	POPTR_0019s05400 (9)	scaffold_19:5745056-5745215(-) (11)	POPTR_0019s05420 (7)	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os10g33970.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g110890.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.214866.1.S1_at	A	A1TS	POPTR_1479s00200	POPTR_1479s00200 (11)	scaffold_1479:939-1461(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214869.1.S1_s_at	A	A2TS	POPTR_0016s04840	POPTR_0016s04840 (11)//POPTR_0453s00230 (11)	scaffold_16:2918621-2919230(+) (11)//scaffold_453:17905-18705(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT5G06800.1	myb-like HTH transcriptional regulator family protein 	LOC_Os04g56990.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g111700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214874.1.S1_at	A	A1TS	POPTR_0009s15410	POPTR_0009s15410 (11)	scaffold_9:11925373-11928538(-) (11)	NA	O49675	"Probable carotenoid cleavage dioxygenase 4, chloroplastic"	AT4G19170.1	nine-cis-epoxycarotenoid dioxygenase 4 	LOC_Os02g47510.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025270.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214875.1.S1_at	A	A1TS	POPTR_0009s15420	POPTR_0009s15420 (11)	scaffold_9:11931238-11931871(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214884.1.S1_s_at	A	A1TS	POPTR_0229s00240	POPTR_0229s00240 (11)	scaffold_229:17224-17292(+) (11)//scaffold_793:5756-5824(+) (11)	POPTR_0004s09390 (8)//POPTR_0229s00260 (8)	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G71140.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.214885.1.S1_s_at	A	A3TS	POPTR_0004s09390	POPTR_0004s09390 (11)//POPTR_0229s00260 (11)//POPTR_0229s00240 (9)	scaffold_229:18815-18866(+) (9)//scaffold_229:29402-29557(+) (11)//scaffold_4:7922501-7922656(+) (11)//scaffold_793:7169-7220(+) (9)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G71140.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.214885.1.S1_x_at	A	A1MS	POPTR_0793s00200	POPTR_0793s00200 (10)	scaffold_229:29356-29556(+) (9)//scaffold_4:7922455-7922655(+) (9)//scaffold_793:7019-7792(+) (10)	POPTR_0004s09390 (8)//POPTR_0229s00260 (8)//POPTR_0229s00240 (8)	Q9LYT3	Protein TRANSPARENT TESTA 12	AT2G04100.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr7g094030.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.214889.1.S1_at	A	A1TS	POPTR_0004s08260	POPTR_0004s08260 (11)	scaffold_4:6799280-6799737(+) (11)	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.214897.1.S1_at	A	A1TS	POPTR_0013s03100	POPTR_0013s03100 (9)	scaffold_13:1887098-1897222(-) (10)	NA	C0LGD6	Probable LRR receptor-like serine/threonine-protein kinase At1g05700	AT1G05700.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44990.1	"light repressible receptor protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.214898.1.S1_x_at	A	A3TS	POPTR_0001s03240	POPTR_0001s03240 (11)//POPTR_0001s07650 (11)//POPTR_0001s07630 (11)	scaffold_1:2663546-2663827(-) (11)//scaffold_1:5768525-5768806(-) (11)//scaffold_1:5791573-5791854(-) (11)	NA	Q8RY17	Wall-associated receptor kinase-like 22	AT1G79670.2	Wall-associated kinase family protein 	LOC_Os02g42150.1	"OsWAK14 - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214899.1.S1_s_at	A	A4TS	POPTR_0001s03240	POPTR_0001s03240 (11)//POPTR_0001s07650 (11)//POPTR_1464s00200 (11)//POPTR_0001s07630 (11)	scaffold_1:2663025-2663119(-) (11)//scaffold_1:5768004-5768098(-) (11)//scaffold_1:5791052-5791146(-) (11)//scaffold_1464:5268-5362(-) (11)	NA	Q8RY17	Wall-associated receptor kinase-like 22	AT1G79670.2	Wall-associated kinase family protein 	LOC_Os02g42150.1	"OsWAK14 - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.21490.1.S1_at	A	A1MS	POPTR_0009s03360	POPTR_0009s03360 (11)	scaffold_9:4001904-4001948(+) (11)	NA	P82381	Proteinase inhibitor	AT5G43580.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr1g090000.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.214908.1.S1_s_at	A	A1TS	POPTR_0006s19490	POPTR_0006s19490 (11)	scaffold_6:18520744-18521212(-) (11)	NA	O24600	"DNA-directed RNA polymerase 3, chloroplastic"	AT2G24120.1	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.214909.1.S1_s_at	A	A1TS	POPTR_0013s03340	POPTR_0013s03340 (11)	scaffold_13:2048170-2049731(-) (11)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214910.1.S1_at	A	A1TS	POPTR_0013s03340	POPTR_0013s03340 (11)	scaffold_13:2054530-2054743(-) (11)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214913.1.S1_at	A	A1TS	POPTR_1606s00200	POPTR_1606s00200 (11)	scaffold_1606:1470-1821(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214914.1.S1_x_at	A	A2TS	POPTR_0013s03910	POPTR_0013s03910 (11)//POPTR_0014s00510 (9)	scaffold_13:2559238-2559373(+) (11)//scaffold_14:438551-438686(-) (9)	POPTR_0014s00710 (6)//POPTR_0014s01120 (6)	Q7XA39	Putative disease resistance protein RGA4	AT5G43470.2	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g021520.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.214916.1.S1_at	A	A1TS	POPTR_0019s13690	POPTR_0019s13690 (11)	scaffold_19:14555741-14556205(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03500.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr4g079350.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214920.1.S1_s_at	A	A1TS	POPTR_0005s04360	POPTR_0005s04360 (11)	scaffold_19:13996375-13996427(-) (11)//scaffold_5:2931086-2931138(+) (11)//scaffold_5:2932854-2932906(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.214922.1.S1_at	A	A1TS	POPTR_0001s13840	POPTR_0001s13840 (11)	scaffold_1:10910445-10910790(+) (11)	NA	NA	NA	NA	NA	LOC_Os11g29630.1	expressed protein	Medtr3g150560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214922.1.S1_s_at	A	A1TS	POPTR_0001s13840	POPTR_0001s13840 (11)	scaffold_1:10910583-10910886(+) (11)	NA	NA	NA	NA	NA	LOC_Os11g29630.1	expressed protein	Medtr3g150560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214925.1.S1_at	A	A1TS	POPTR_0017s12500	POPTR_0017s12500 (11)	scaffold_17:12671282-12671423(-) (11)	NA	Q70EK8	Inactive ubiquitin carboxyl-terminal hydrolase 53	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214926.1.S1_at	A	A1TS	POPTR_0017s12510	POPTR_0017s12510 (11)	scaffold_17:12672849-12673345(-) (11)	NA	Q8BL06	Inactive ubiquitin carboxyl-terminal hydrolase 54	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214930.1.S1_s_at	A	A1TS	POPTR_0015s06510	POPTR_0015s06510 (11)	scaffold_15:7417521-7418182(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214932.1.S1_s_at	A	A4TS	POPTR_0017s06080	POPTR_0017s06080 (11)//POPTR_0017s06120 (11)//POPTR_0017s06100 (11)//POPTR_0322s00200 (11)	scaffold_17:4716184-4716523(+) (11)//scaffold_17:4730638-4730977(+) (11)//scaffold_17:4739891-4740230(+) (11)//scaffold_322:13653-13992(-) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34230.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr5g036700.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214937.1.S1_at	A	A1TS	POPTR_2736s00200	POPTR_2736s00200 (11)	scaffold_2736:814-1362(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214939.1.S1_s_at	A	A2MS	POPTR_0005s26940	POPTR_0005s26940 (11)//POPTR_1035s00200 (9)	scaffold_1035:6632-7048(+) (9)//scaffold_5:24781960-24782543(-) (11)	NA	Q8VXV7	Lysine-specific histone demethylase 1 homolog 1	AT1G62830.1	LSD1-like 1 	LOC_Os02g51880.1	"amine oxidase, putative, expressed"	Medtr3g076130.1	Amine oxidase; SWIRM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214947.1.S1_x_at	A	A4TS	POPTR_0014s00470	POPTR_0014s00470 (11)//POPTR_0014s01150 (11)//POPTR_0014s00510 (9)//POPTR_0014s00500 (9)	scaffold_14:378581-378753(+) (11)//scaffold_14:408052-408139(+) (9)//scaffold_14:438519-438606(-) (9)//scaffold_14:543743-543915(+) (10)//scaffold_14:1092868-1093040(-) (11)	POPTR_0014s01140 (7)//POPTR_0014s00430 (7)	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.214948.1.S1_at	A	A1MS	POPTR_0015s05060	POPTR_0015s05060 (9)	scaffold_15:5390429-5390627(-) (9)	NA	Q9LD37	"Probable cyclic nucleotide-gated ion channel 20, chloroplastic"	AT3G17700.1	cyclic nucleotide-binding transporter 1 	LOC_Os02g53340.2	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr6g074020.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.214948.1.S1_s_at	A	A2TS	POPTR_0015s05060	POPTR_0015s05060 (11)//POPTR_0015s05090 (11)	scaffold_15:5390624-5390997(-) (11)//scaffold_15:5420123-5420496(-) (11)	NA	Q9LD37	"Probable cyclic nucleotide-gated ion channel 20, chloroplastic"	AT3G17700.1	cyclic nucleotide-binding transporter 1 	LOC_Os02g53340.2	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr6g074020.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.214952.1.S1_s_at	A	A1TS	POPTR_0014s17150	POPTR_0014s17150 (11)	scaffold_14:13301802-13302340(+) (11)	NA	NA	NA	AT4G12760.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g34480.1	expressed protein	Medtr3g163640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214953.1.S1_s_at	A	A1TS	POPTR_0004s06260	POPTR_0004s06260 (11)	scaffold_4:4957167-4957915(-) (11)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214961.1.S1_s_at	A	A2TS	POPTR_0001s01660	POPTR_0001s01660 (11)//POPTR_0137s00220 (11)	scaffold_1:1235261-1235534(-) (11)//scaffold_137:31047-31320(-) (11)	POPTR_0001s01700 (7)	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028050.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.214965.1.S1_s_at	A	A1TS	POPTR_0013s07020	POPTR_0013s07020 (11)	scaffold_13:5716946-5717265(-) (11)//scaffold_93:94-413(-) (11)	NA	Q9LYG9	Uncharacterized protein At5g12080	AT5G12080.3	mechanosensitive channel of small conductance-like 10 	LOC_Os06g10410.1	"uncharacterized mscS family protein, putative, expressed"	Medtr3g139330.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214967.1.S1_s_at	A	A2TS	POPTR_0006s12000	POPTR_0212s00200 (11)//POPTR_0006s12000 (11)	scaffold_212:7709-8293(-) (11)//scaffold_6:9172585-9173169(+) (11)	NA	Q9LZM4	Wall-associated receptor kinase-like 20	AT5G02070.1	Protein kinase family protein 	LOC_Os05g25390.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr3g092070.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214968.1.S1_s_at	A	A1TS	POPTR_0001s12700	POPTR_0001s12700 (11)	scaffold_1:9843390-9843955(-) (11)	NA	P55861	DNA replication licensing factor mcm2	AT1G44900.1	minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os11g29380.1	"MCM2 - Putative minichromosome maintenance MCM complex subunit 2, expressed"	Medtr8g137330.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0016887|ATPase activity	NA
PtpAffx.214969.1.S1_at	A	A1TS	POPTR_1416s00210	POPTR_1416s00210 (11)	scaffold_1416:2027-2193(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214970.1.S1_a_at	A	A1MS	POPTR_0005s20820	POPTR_0005s20820 (11)	scaffold_5:19963527-19963603(-) (11)//scaffold_5:19963628-19963704(-) (11)	NA	O49289	Putative DEAD-box ATP-dependent RNA helicase 29	AT1G77030.1	"hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases "	LOC_Os08g32090.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr4g109140.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.214973.1.S1_at	A	A1TS	POPTR_0006s25980	POPTR_0006s25980 (10)	scaffold_6:24275242-24276007(+) (11)	POPTR_0018s00820 (6)	O81004	GTP-binding protein At2g22870	AT5G11480.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g53150.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr3g132650.1	Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.214976.1.S1_at	A	A1TS	POPTR_0007s11240	POPTR_0007s11240 (11)	scaffold_7:11544454-11545118(+) (11)	NA	NA	NA	AT3G50610.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g27680.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214976.1.S1_x_at	A	A1TS	POPTR_0007s11240	POPTR_0007s11240 (10)	scaffold_7:11544454-11545118(+) (11)	NA	NA	NA	AT3G50610.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g27680.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214977.1.S1_at	A	A1TS	POPTR_0003s06470	POPTR_0003s06470 (11)	scaffold_3:7956172-7956333(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g26940.1	"cytochrome P450, putative, expressed"	Medtr8g025110.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214986.1.S1_at	A	A1TS	POPTR_0005s02190	POPTR_0005s02190 (11)	scaffold_5:1449164-1449540(+) (11)	NA	O80494	F-box protein PP2-B15	AT1G09155.1	phloem protein 2-B15 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr7g138350.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214987.1.S1_s_at	A	A1TS	POPTR_0005s02200	POPTR_0005s02200 (11)	scaffold_5:1450967-1451175(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g138360.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214988.1.S1_s_at	A	A1TS	POPTR_0005s02210	POPTR_0005s02210 (11)	scaffold_5:1453032-1453468(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.214989.1.S1_s_at	A	A1TS	POPTR_0005s02220	POPTR_0005s02220 (11)	scaffold_5:1454563-1456994(+) (11)//scaffold_5:1456561-1461587(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.214991.1.S1_s_at	A	A1TS	POPTR_0004s23940	POPTR_0004s23940 (11)	scaffold_4:22559988-22560724(-) (11)	NA	P09122	DNA polymerase III subunit gamma/tau	AT2G02480.1	AAA-type ATPase family protein 	LOC_Os12g10670.1	"AAA-type ATPase family protein, putative, expressed"	Medtr2g021690.1	"AAA ATPase; DNA polymerase III clamp loader subunit, C-terminal "	NA	GO:0005524|ATP binding	NA
PtpAffx.214993.1.S1_s_at	A	A1TS	POPTR_0019s09390	POPTR_0019s09390 (11)	scaffold_19:10936304-10936560(-) (11)	NA	NA	NA	AT1G17680.2	tetratricopeptide repeat (TPR)-containing protein 	NA	NA	Medtr4g109240.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214997.1.S1_at	A	A1TS	POPTR_0006s08930	POPTR_0006s08930 (11)	scaffold_18:3991078-3998860(+) (11)//scaffold_6:6592360-6592434(+) (11)//scaffold_8:17228274-17228348(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214998.1.S1_at	A	A3TS	POPTR_0001s44830	POPTR_0019s11750 (11)//POPTR_0001s44830 (11)//POPTR_0005s28430 (11)	scaffold_1:45221732-45222068(+) (11)//scaffold_19:12978697-12979031(-) (11)//scaffold_4:16271763-16272099(+) (9)//scaffold_5:25763680-25764026(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215.1.A1_at	A	A1TS	POPTR_0015s06040	POPTR_0015s06040 (9)	scaffold_15:6341074-6341260(+) (9)	NA	Q9SUQ3	Probable inactive receptor kinase At4g23740	AT4G23740.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g12390.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g124770.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215000.1.S1_at	A	A1TS	POPTR_0006s02700	POPTR_0006s02700 (10)	scaffold_6:1719668-1719976(-) (11)	NA	A7SMW7	"L-2-hydroxyglutarate dehydrogenase, mitochondrial"	AT3G56840.1	FAD-dependent oxidoreductase family protein 	LOC_Os01g59490.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr6g017840.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.215000.1.S1_s_at	A	A1TS	POPTR_0006s02700	POPTR_0006s02700 (11)	scaffold_6:1719679-1719817(-) (11)	NA	A7SMW7	"L-2-hydroxyglutarate dehydrogenase, mitochondrial"	AT3G56840.1	FAD-dependent oxidoreductase family protein 	LOC_Os01g59490.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr6g017840.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.215001.1.S1_at	A	A1TS	POPTR_0002s23220	POPTR_0002s23220 (11)	scaffold_2:20669628-20670576(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215001.1.S1_s_at	A	A1TS	POPTR_0002s23220	POPTR_0002s23220 (11)	scaffold_2:20669359-20669633(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215006.1.S1_at	A	A1TS	POPTR_0004s02810	POPTR_0004s02810 (9)	scaffold_4:1859081-1859116(+) (9)	NA	Q9LPZ3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410	AT1G11410.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124500.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215006.1.S1_s_at	A	A1TS	POPTR_0004s02810	POPTR_0004s02810 (11)	scaffold_4:1858616-1859048(+) (11)	NA	Q9LPZ3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410	AT1G11410.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124500.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215008.1.S1_at	A	A1TS	POPTR_0010s01820	POPTR_0010s01820 (11)	scaffold_10:2001271-2001417(+) (11)	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.215010.1.S1_s_at	A	A3TS	POPTR_0001s07740	POPTR_0001s32310 (11)//POPTR_0001s07740 (11)//POPTR_2568s00200 (10)	scaffold_1:5862421-5862594(-) (11)//scaffold_1:24585539-24585712(-) (11)//scaffold_1:30695916-30696089(-) (11)//scaffold_10:3956484-3956530(+) (9)//scaffold_13:7272827-7273000(+) (11)//scaffold_2:4957759-4957932(-) (11)//scaffold_2568:2429-2602(-) (11)	POPTR_0001s21465 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215011.1.S1_s_at	A	A1TS	POPTR_0001s03140	POPTR_0001s03140 (11)	scaffold_1:2480645-2480992(+) (11)	NA	NA	NA	AT5G47020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g10380.1	"glycine-rich protein, putative, expressed"	Medtr5g014010.1	"glycine-rich protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215013.1.S1_x_at	A	A1MS	POPTR_0007s15270	POPTR_0007s15270 (9)	scaffold_7:14863129-14864073(-) (9)	NA	Q8L4M1	WD repeat-containing protein DWA1	AT2G19430.1	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 	LOC_Os09g19900.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC233845_6.1	WD40-like AC233845.2 14214-12180 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215014.1.S1_at	A	A1TS	POPTR_0091s00260	POPTR_0091s00260 (11)	scaffold_16:10716219-10716614(-) (11)//scaffold_91:43442-43839(+) (11)	NA	O81223	Calcineurin B-like protein 4	AT5G24270.2	Calcium-binding EF-hand family protein 	LOC_Os12g06510.1	"calcineurin B, putative, expressed"	Medtr3g124000.2	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215015.1.S1_at	A	A1TS	POPTR_0009s08630	POPTR_0009s08630 (9)	scaffold_9:7837135-7838129(-) (10)	NA	Q9M439	"Branched-chain-amino-acid aminotransferase 2, chloroplastic"	AT1G10070.2	branched-chain amino acid transaminase 2 	LOC_Os03g01600.1	"aminotransferase domain containing protein, putative, expressed"	Medtr5g015110.1	Branched-chain amino acid aminotransferase II 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.215018.1.S1_at	A	A1MS	POPTR_0006s13500	POPTR_0006s13500 (11)	scaffold_6:10713199-10713292(-) (11)	NA	Q8GYL7	"Pentatricopeptide repeat-containing protein At5g02830, chloroplastic"	AT5G02830.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g17634.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g120750.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215018.1.S1_s_at	A	A1TS	POPTR_0006s13500	POPTR_0006s13500 (11)	scaffold_6:10713171-10714052(-) (11)	NA	Q8GYL7	"Pentatricopeptide repeat-containing protein At5g02830, chloroplastic"	AT5G02830.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g17634.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g120750.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215019.1.S1_s_at	A	A1TS	POPTR_0006s13500	POPTR_0006s13500 (11)	scaffold_6:10716930-10718137(-) (11)	NA	Q8GYL7	"Pentatricopeptide repeat-containing protein At5g02830, chloroplastic"	AT5G02830.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g17634.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g120750.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215021.1.S1_at	A	A1TS	POPTR_0301s00200	POPTR_0301s00200 (11)	scaffold_301:17347-17746(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215022.1.S1_at	A	A1TS	POPTR_0004s01160	POPTR_0004s01160 (10)	scaffold_4:631899-632063(-) (10)	NA	Q9SLF3	"Translocase of chloroplast 132, chloroplastic"	AT2G16640.1	multimeric translocon complex in the outer envelope membrane 132 	LOC_Os10g40110.1	"GTP binding protein, putative, expressed"	Medtr2g130100.1	AIG1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215022.1.S1_x_at	A	A1TS	POPTR_0004s01160	POPTR_0004s01160 (10)	scaffold_4:631892-632063(-) (10)	NA	Q9SLF3	"Translocase of chloroplast 132, chloroplastic"	AT2G16640.1	multimeric translocon complex in the outer envelope membrane 132 	LOC_Os10g40110.1	"GTP binding protein, putative, expressed"	Medtr2g130100.1	AIG1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215024.1.S1_s_at	A	A1TS	POPTR_0014s06940	POPTR_0014s06940 (11)	scaffold_14:5226104-5226223(+) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT2G45630.2	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01650.1	erythronate-4-phosphate dehydrogenase domain containing protein	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.215025.1.S1_at	A	A1MS	POPTR_0014s06940	POPTR_0014s06940 (11)	scaffold_14:5226057-5226338(+) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT2G45630.2	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01650.1	erythronate-4-phosphate dehydrogenase domain containing protein	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.215025.1.S1_x_at	A	A1MS	POPTR_0014s06940	POPTR_0014s06940 (11)	scaffold_14:5226048-5226338(+) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT2G45630.2	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01650.1	erythronate-4-phosphate dehydrogenase domain containing protein	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.215026.1.S1_s_at	A	A1TS	POPTR_0003s22320	POPTR_0003s22320 (11)	scaffold_3:20145775-20146166(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010560.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215035.1.S1_at	A	A1TS	POPTR_0015s04000	POPTR_0015s04000 (11)	scaffold_15:3901406-3901471(+) (11)	NA	Q40392	TMV resistance protein N	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.215035.1.S1_s_at	A	A2TS	POPTR_0015s04000	POPTR_0015s04030 (11)//POPTR_0015s04000 (11)	scaffold_15:3900857-3901106(+) (11)//scaffold_15:3940088-3940337(+) (11)	NA	Q40392	TMV resistance protein N	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.215036.1.S1_s_at	A	A1TS	POPTR_0006s01570	POPTR_0006s01570 (11)	scaffold_6:954583-954741(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g030120.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.215038.1.S1_at	A	A1TS	POPTR_0014s05500	POPTR_0014s05500 (9)	scaffold_14:4117313-4117790(+) (9)	NA	Q8LBQ7	Ethylene-responsive transcription factor ERF034	AT2G44940.1	Integrase-type DNA-binding superfamily protein 	LOC_Os10g41130.1	"AP2 domain containing protein, expressed"	Medtr7g040320.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.215046.1.S1_at	A	A2TS	POPTR_0006s07890	POPTR_0006s07890 (11)//POPTR_0006s07870 (10)	scaffold_6:5752210-5753118(-) (10)//scaffold_6:5766730-5767713(-) (11)	NA	P38605	Cycloartenol synthase	AT2G07050.1	cycloartenol synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr5g008860.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.215047.1.S1_s_at	A	A3TS	POPTR_0010s08240	POPTR_0010s08240 (11)//POPTR_0010s08250 (11)//POPTR_0010s08270 (11)	scaffold_10:9183437-9183922(-) (11)//scaffold_10:9196241-9196726(-) (11)//scaffold_10:9225093-9225578(-) (11)	NA	Q96303	Inorganic phosphate transporter 1-4	AT2G38940.1	phosphate transporter 1;4 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.215051.1.S1_at	A	A1TS	POPTR_0002s23520	POPTR_0002s23520 (11)	scaffold_2:21041969-21052725(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g27060.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215053.1.S1_at	A	A1TS	POPTR_0019s02970	POPTR_0019s02970 (10)	scaffold_19:2913508-2913777(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.215054.1.S1_at	A	A1TS	POPTR_0019s02960	POPTR_0019s02960 (11)	scaffold_19:2875666-2876238(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215055.1.S1_at	A	A1MS	POPTR_0019s02940	POPTR_0019s02940 (9)	scaffold_19:2862173-2862642(+) (11)	NA	NA	NA	AT5G17880.1	disease resistance protein (TIR-NBS-LRR class) 	NA	NA	Medtr7g088000.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.215056.1.S1_at	A	A1TS	POPTR_0019s02930	POPTR_0019s02930 (11)	scaffold_19:2860452-2860643(-) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT1G21980.1	phosphatidylinositol-4-phosphate 5-kinase 1 	LOC_Os03g49800.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr5g064960.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215057.1.S1_s_at	A	A1TS	POPTR_0019s01240	POPTR_0019s01240 (11)	scaffold_19:997226-997488(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215058.1.S1_at	A	A1TS	POPTR_0019s02900	POPTR_0019s02900 (11)	scaffold_19:2822530-2822897(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.215058.1.S1_x_at	A	A1TS	POPTR_0019s02900	POPTR_0019s02900 (11)	scaffold_19:2822491-2822897(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.215059.1.S1_at	A	A1TS	POPTR_0019s02890	POPTR_0019s02890 (11)	scaffold_19:2816821-2817166(+) (11)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g41370.1	Leucine Rich Repeat family protein	Medtr8g012180.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.215060.1.S1_at	A	A1TS	POPTR_0019s01280	POPTR_0019s01280 (11)	scaffold_19:1095663-1096137(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215063.1.S1_at	A	A1MS	POPTR_0019s01300	POPTR_0019s01300 (11)	scaffold_121:58795-58856(-) (11)//scaffold_19:1134841-1134902(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215063.1.S1_s_at	A	A1MS	POPTR_0019s01300	POPTR_0019s01300 (11)	scaffold_121:58873-59373(-) (11)//scaffold_19:1134324-1134824(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215064.1.S1_at	A	A1TS	POPTR_0019s01330	POPTR_0019s01330 (11)	scaffold_19:1172403-1173052(+) (11)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	NA	NA	Medtr8g065790.1	Terpenoid synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215064.1.S1_s_at	A	A1TS	POPTR_0019s01330	POPTR_0019s01330 (11)	scaffold_19:1173088-1173320(+) (11)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	NA	NA	Medtr8g065790.1	Terpenoid synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215066.1.S1_at	A	A1TS	POPTR_0019s01490	POPTR_0019s01490 (11)	scaffold_19:1304919-1305964(+) (11)	NA	Q8BX09	Retinoblastoma-binding protein 5	AT3G21060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g10990.1	"retinoblastoma-binding protein-like, putative, expressed"	Medtr8g044790.1	C-type lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215067.1.S1_at	A	A1TS	POPTR_0019s01510	POPTR_0019s01510 (11)	scaffold_19:1322343-1324308(-) (11)	NA	Q5R7Q3	Magnesium transporter NIPA2	AT2G21120.1	Protein of unknown function (DUF803) 	LOC_Os01g65310.1	"DUF803 domain containing, putative, expressed"	Medtr4g144260.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.215068.1.S1_at	A	A1TS	POPTR_0019s01530	POPTR_0019s01530 (11)	scaffold_19:1347101-1348216(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215069.1.S1_at	A	A1TS	POPTR_0019s01540	POPTR_0019s01540 (11)	scaffold_19:1348527-1349081(-) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.215070.1.S1_at	A	A1TS	POPTR_0019s01550	POPTR_0019s01550 (9)	scaffold_182:10285-11096(-) (9)//scaffold_19:1371703-1373930(+) (10)	POPTR_0182s00210 (8)	NA	NA	AT1G34320.1	Protein of unknown function (DUF668) 	LOC_Os01g65330.1	expressed protein	Medtr4g144270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215071.1.S1_at	A	A2TS	POPTR_0019s01560	POPTR_0019s01560 (9)//POPTR_0182s00240 (9)	scaffold_182:33663-33881(-) (10)//scaffold_19:1380971-1381189(+) (10)	POPTR_0019s01570 (8)//POPTR_0182s00220 (6)	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os09g13820.1	"pollen signalling protein with adenylyl cyclase activity, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.215073.1.S1_at	A	A1TS	POPTR_0019s01620	POPTR_0019s01620 (11)	scaffold_19:1435436-1435896(-) (11)	NA	Q5Q0H2	Fasciclin-like arabinogalactan protein 19	AT1G15190.1	Fasciclin-like arabinogalactan family protein 	NA	NA	Medtr2g008020.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215074.1.S1_at	A	A2TS	POPTR_0019s01630	POPTR_0019s01630 (11)//POPTR_0879s00200 (11)	scaffold_19:1438359-1438445(-) (11)//scaffold_879:1552-1638(+) (11)	NA	Q39962	Citrate-binding protein	NA	NA	LOC_Os12g07310.1	"citrate-binding protein precursor, putative, expressed"	Medtr3g144330.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215074.1.S1_s_at	A	A2TS	POPTR_0019s01630	POPTR_0019s01630 (11)//POPTR_0879s00200 (11)	scaffold_19:1438095-1438348(-) (11)//scaffold_879:1649-1902(+) (11)	NA	Q39962	Citrate-binding protein	NA	NA	LOC_Os12g07310.1	"citrate-binding protein precursor, putative, expressed"	Medtr3g144330.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215075.1.S1_at	A	A1TS	POPTR_0019s01660	POPTR_0019s01660 (11)	scaffold_19:1460894-1461579(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g099670.1	TIR; NB-ARC; AAA ATPase 	NA	GO:0003677|DNA binding	NA
PtpAffx.215077.1.S1_s_at	A	A2TS	POPTR_0019s01680	POPTR_0019s01690 (11)//POPTR_0019s01680 (11)	scaffold_19:1477287-1477860(-) (11)//scaffold_19:1487401-1487974(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140360.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.215081.1.S1_s_at	A	A2TS	POPTR_0019s01840	POPTR_0019s01850 (11)//POPTR_0019s01840 (11)	scaffold_19:1591893-1592678(+) (11)//scaffold_19:1607825-1608615(+) (11)	NA	P09800	Legumin B	AT5G44120.3	RmlC-like cupins superfamily protein 	LOC_Os01g55690.1	"glutelin, putative, expressed"	Medtr1g086770.1	11-S plant seed storage protein 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.215082.1.S1_at	A	A1TS	POPTR_0019s01850	POPTR_0019s01850 (11)	scaffold_19:1592787-1592836(+) (11)//scaffold_19:1608724-1608773(+) (11)	NA	P09800	Legumin B	AT5G44120.3	RmlC-like cupins superfamily protein 	LOC_Os01g55690.1	"glutelin, putative, expressed"	Medtr1g086770.1	11-S plant seed storage protein 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.215084.1.S1_at	A	A1TS	POPTR_0019s01900	POPTR_0019s01900 (9)	scaffold_19:1684528-1684687(+) (9)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215084.1.S1_x_at	A	A1TS	POPTR_0019s01900	POPTR_0019s01900 (9)	scaffold_19:1684528-1684758(+) (9)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215088.1.S1_at	A	A1TS	POPTR_0018s04800	POPTR_0018s04800 (11)	scaffold_18:4182153-4182736(-) (11)	NA	O88480	Calcineurin-binding protein cabin-1	AT4G32820.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g48100.1	expressed protein	Medtr3g128160.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215090.1.S1_s_at	A	A2TS	POPTR_0004s15900	POPTR_0004s15900 (11)//POPTR_0004s15960 (11)	scaffold_4:16411278-16411358(+) (11)//scaffold_4:16445042-16445122(+) (11)	NA	Q8VZ80	Polyol transporter 5	AT3G18830.1	polyol/monosaccharide transporter 5 	LOC_Os07g39350.1	"transporter family protein, putative, expressed"	Medtr3g159730.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.215092.1.S1_x_at	A	A2TS	POPTR_0007s05945	POPTR_0177s00210 (9)//POPTR_0007s05945 (9)	scaffold_177:40334-49393(+) (11)//scaffold_7:4081166-4081790(+) (9)//scaffold_7:4100906-4111140(+) (10)//scaffold_7:4110940-4115927(+) (10)	POPTR_0007s05960 (8)//POPTR_0007s05920 (6)//POPTR_0177s00200 (6)	Q42602	Cytochrome P450 89A2	AT1G64950.1	"cytochrome P450, family 89, subfamily A, polypeptide 5 "	LOC_Os10g37050.1	"transposon protein, putative, unclassified, expressed"	Medtr2g010350.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.215093.1.S1_at	A	A1TS	POPTR_0001s47790	POPTR_0001s47790 (11)	scaffold_1:42518923-42519076(-) (9)//scaffold_1:48087573-48087719(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215097.1.S1_s_at	A	A1TS	POPTR_0001s21940	POPTR_0001s21940 (11)	scaffold_1:20519218-20519564(+) (11)	NA	NA	NA	AT1G22030.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g01400.1	expressed protein	Medtr4g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215098.1.S1_s_at	A	A1TS	POPTR_0005s03470	POPTR_0005s03470 (11)	scaffold_5:2320771-2320811(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05960.1	"receptor kinase, putative, expressed"	Medtr6g038640.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215099.1.S1_at	A	A1MS	POPTR_0022s00840	POPTR_0022s00840 (10)	scaffold_22:436476-437131(+) (10)	NA	Q9C5E7	"Pumilio homolog 6, chloroplastic"	AT4G25880.1	pumilio 6 	LOC_Os08g40830.2	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.215100.1.S1_x_at	A	A5TS	POPTR_0001s44830	POPTR_0019s11750 (11)//POPTR_0005s01140 (11)//POPTR_0001s44830 (11)//POPTR_0005s28430 (11)//POPTR_0004s15690 (10)	scaffold_1:45221844-45221964(+) (11)//scaffold_19:12978799-12978919(-) (11)//scaffold_36:85877-85972(-) (9)//scaffold_4:16271875-16271995(+) (10)//scaffold_5:703338-703428(-) (9)//scaffold_5:713530-713650(-) (11)//scaffold_5:25763792-25763912(+) (11)//scaffold_8:12404775-12404870(+) (9)	POPTR_0019s13780 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215106.1.S1_at	A	A1TS	POPTR_0003s09140	POPTR_0003s09140 (11)	scaffold_3:10449238-10449799(-) (11)	NA	Q9M8T3	Putative gamma-glutamylcyclotransferase At3g02910	AT5G46720.1	AIG2-like (avirulence induced gene) family protein 	LOC_Os03g63700.1	"AIG2-like family domain containing protein, expressed"	Medtr5g030080.1	Protein of unknown function UPF0131 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215107.1.S1_at	A	A1TS	POPTR_0003s09130	POPTR_0003s09130 (11)	scaffold_3:10444854-10445480(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215108.1.S1_at	A	A1TS	POPTR_0003s09120	POPTR_0003s09120 (11)	scaffold_3:10443494-10444130(+) (11)	NA	Q9FIQ1	Ubiquitin carboxyl-terminal hydrolase 21	AT5G46740.1	ubiquitin-specific protease 21 	LOC_Os06g08530.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr5g030130.2	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.215109.1.S1_at	A	A1TS	POPTR_0003s09080	POPTR_0003s09080 (11)	scaffold_3:10405018-10405348(-) (11)	NA	NA	NA	AT2G35215.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21511.1.A1_at	A	A1TS	POPTR_0014s01270	POPTR_0014s01270 (11)	scaffold_14:1243047-1243527(+) (11)	NA	C0LGI5	Probable LRR receptor-like serine/threonine-protein kinase At1g69990	AT3G49750.1	receptor like protein 44 	LOC_Os09g04490.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr5g015180.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.215110.1.S1_at	A	A1TS	POPTR_0003s09060	POPTR_0003s09060 (11)	scaffold_3:10391440-10391990(-) (11)	NA	NA	NA	AT1G32610.2	hydroxyproline-rich glycoprotein family protein 	LOC_Os10g42650.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215111.1.S1_at	A	A1TS	POPTR_0003s09050	POPTR_0003s09050 (11)	scaffold_3:10368345-10368930(+) (11)	NA	O49686	Abscisic acid receptor PYR1	AT4G17870.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os10g42280.1	"cyclase/dehydrase family protein, putative, expressed"	Medtr1g020630.1	Bet v I allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215112.1.S1_at	A	A1TS	POPTR_0003s09010	POPTR_0003s09010 (11)	scaffold_3:10333305-10333769(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT4G17800.1	Predicted AT-hook DNA-binding family protein 	LOC_Os04g50030.1	"DNA binding protein, putative, expressed"	Medtr7g092530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215113.1.S1_at	A	A1TS	POPTR_0003s09000	POPTR_0003s09000 (11)	scaffold_3:10301256-10301815(-) (11)	NA	Q9LHS9	Probable transcriptional regulator RABBIT EARS	AT4G17810.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os07g01180.1	"ZOS7-01 - C2H2 zinc finger protein, expressed"	Medtr5g014570.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.215114.1.S1_at	A	A1TS	POPTR_0003s08970	POPTR_0003s08970 (11)	scaffold_3:10248229-10249537(-) (11)	NA	NA	NA	AT3G02890.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os11g18770.2	"PHD-finger family protein, expressed"	Medtr5g007340.1	"Zinc finger, FYVE/PHD-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215115.1.S1_at	A	A1TS	POPTR_0003s08830	POPTR_0003s08830 (11)	scaffold_3:10180777-10181618(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT4G17980.1	NAC domain containing protein 71 	LOC_Os10g42130.1	"no apical meristem protein, putative, expressed"	Medtr8g102910.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.215115.1.S1_s_at	A	A2TS	POPTR_0001s02710	POPTR_0003s08830 (11)//POPTR_0001s02710 (11)	scaffold_1:2138390-2139336(-) (11)//scaffold_3:10180740-10181708(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT4G17980.1	NAC domain containing protein 71 	LOC_Os10g42130.1	"no apical meristem protein, putative, expressed"	Medtr5g014470.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.215115.1.S1_x_at	A	A1TS	POPTR_0003s08830	POPTR_0003s08830 (11)	scaffold_3:10180777-10181900(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT4G17980.1	NAC domain containing protein 71 	LOC_Os10g42130.1	"no apical meristem protein, putative, expressed"	Medtr8g102910.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.215116.1.S1_at	A	A1TS	POPTR_0003s08800	POPTR_0003s08800 (11)	scaffold_3:10165027-10165477(-) (11)	NA	Q9LS25	"Pentatricopeptide repeat-containing protein At5g46580, chloroplastic"	AT5G46580.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os03g63910.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g102950.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215118.1.S1_at	A	A1MS	POPTR_0003s08750	POPTR_0003s08750 (10)	scaffold_3:10134214-10135505(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215119.1.S1_at	A	A1TS	POPTR_0003s08730	POPTR_0003s08730 (11)	scaffold_3:10129795-10130044(-) (11)	NA	NA	NA	AT5G26900.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os09g06680.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g068620.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215120.1.S1_s_at	A	A1TS	POPTR_0003s08710	POPTR_0003s08710 (11)	scaffold_3:10103111-10103514(-) (11)	NA	Q9LQL2	Nitrate transporter 1.5	AT1G32450.1	nitrate transporter 1.5 	LOC_Os02g48570.1	"peptide transporter PTR2, putative, expressed"	Medtr8g103070.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.215121.1.S1_at	A	A1TS	POPTR_0003s08690	POPTR_0003s08690 (11)	scaffold_3:10085474-10085991(-) (11)	NA	Q9C866	Pentatricopeptide repeat-containing protein At1g31430	AT1G31430.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os06g39650.1	"pentatricopeptide, putative, expressed"	Medtr4g025960.1	N-6 Adenine-specific DNA methylase; Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215122.1.S1_at	A	A1TS	POPTR_0003s08680	POPTR_0003s08680 (11)	scaffold_3:10079362-10079780(-) (11)	NA	NA	NA	AT3G57990.1	unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). 	LOC_Os09g31458.1	expressed protein	Medtr5g014330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215122.1.S1_x_at	A	A1TS	POPTR_0003s08680	POPTR_0003s08680 (11)	scaffold_3:10079325-10079780(-) (11)	NA	NA	NA	AT3G57990.1	unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). 	LOC_Os09g31458.1	expressed protein	Medtr5g014330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215124.1.S1_at	A	A1TS	POPTR_0003s08660	POPTR_0003s08660 (9)	scaffold_3:10058846-10060279(+) (9)	NA	Q9FUR2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 2"	AT4G18010.2	myo-inositol polyphosphate 5-phosphatase 2 	LOC_Os01g51890.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr5g014290.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215126.1.S1_s_at	A	A1TS	POPTR_0003s08640	POPTR_0003s08640 (11)	scaffold_3:10041499-10042038(-) (11)	NA	Q67A25	S-norcoclaurine synthase	NA	NA	LOC_Os04g50700.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr4g107690.1	Bet v I allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215127.1.S1_at	A	A1TS	POPTR_0003s08630	POPTR_0003s08630 (11)	scaffold_3:10038453-10038967(+) (11)	NA	NA	NA	AT3G52460.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215128.1.S1_at	A	A1TS	POPTR_0003s08620	POPTR_0003s08620 (11)	scaffold_3:10035083-10035672(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT5G33340.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g37550.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr5g088240.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215129.1.S1_at	A	A1TS	POPTR_0003s08600	POPTR_0003s08600 (11)	scaffold_3:10011078-10012453(+) (11)	NA	Q6LA43	Two-component response regulator-like APRR2	AT4G18020.6	CheY-like two-component responsive regulator family protein 	LOC_Os01g13740.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr5g014220.2	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215130.1.S1_at	A	A1TS	POPTR_0003s08560	POPTR_0003s08560 (11)	scaffold_3:9945561-9946108(-) (11)	NA	P0C7R0	"Pentatricopeptide repeat-containing protein At1g32415, mitochondrial"	AT1G32415.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os12g19260.1	"tetratricopeptide-like helical, putative, expressed"	Medtr5g014130.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215132.1.S1_at	A	A1TS	POPTR_0003s08540	POPTR_0003s08540 (11)	scaffold_3:9928849-9929342(-) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT1G08070.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g24240.1	"pentatricopeptide, putative, expressed"	Medtr8g077580.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215133.1.S1_at	A	A1TS	POPTR_0003s08530	POPTR_0003s08530 (11)	scaffold_3:9925149-9926259(+) (11)	NA	Q850K7	Expansin-like B1	AT4G17030.1	expansin-like B1 	LOC_Os07g31390.1	"beta-expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215134.1.S1_at	A	A1TS	POPTR_0003s08510	POPTR_0003s08510 (11)	scaffold_3:9918388-9918938(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215136.1.S1_at	A	A1TS	POPTR_0003s08400	POPTR_0003s08400 (11)	scaffold_3:9815242-9815668(-) (11)	NA	NA	NA	AT1G32730.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF702 (InterPro:IPR007818); Has 120 Blast hits to 118 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 63; Fungi - 4; Plants - 33; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os08g03550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215137.1.S1_at	A	A1TS	POPTR_0003s08390	POPTR_0003s08390 (11)	scaffold_3:9792028-9792094(-) (11)	NA	NA	NA	AT1G32740.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os02g46220.1	expressed protein	Medtr5g013870.1	"F6N18.12, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215138.1.S1_at	A	A1TS	POPTR_0003s08380	POPTR_0003s08380 (9)	scaffold_3:9760033-9760337(-) (9)	NA	NA	NA	AT4G17670.1	Protein of unknown function (DUF581) 	LOC_Os04g49660.1	"DUF581 domain containing protein, expressed"	Medtr5g013920.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215138.1.S1_x_at	A	A1TS	POPTR_0003s08380	POPTR_0003s08380 (10)	scaffold_3:9759951-9760498(-) (10)	NA	NA	NA	AT4G17670.1	Protein of unknown function (DUF581) 	LOC_Os04g49660.1	"DUF581 domain containing protein, expressed"	Medtr5g013920.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215139.1.S1_at	A	A1TS	POPTR_0003s08290	POPTR_0003s08290 (11)	scaffold_3:9689614-9690105(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21514.1.S1_at	A	A1TS	POPTR_0007s10710	POPTR_0007s10710 (11)	scaffold_7:10753474-10753688(-) (11)	NA	NA	NA	AT5G67210.1	Protein of unknown function (DUF579) 	LOC_Os06g47310.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr4g130370.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21514.2.S1_s_at	A	A2TS	POPTR_0005s18480	POPTR_0007s10710 (11)//POPTR_0005s18480 (11)	scaffold_5:16719067-16719375(+) (11)//scaffold_7:10753774-10754082(-) (11)	NA	NA	NA	AT5G67210.1	Protein of unknown function (DUF579) 	LOC_Os06g47310.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr4g130370.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215140.1.S1_at	A	A1MS	POPTR_0003s08280	POPTR_0003s08280 (10)	scaffold_3:9687390-9688531(-) (10)	NA	Q9SJQ6	Protein ROS1	AT2G36490.1	demeter-like 1 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr2g008980.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215141.1.S1_at	A	A1TS	POPTR_0003s08280	POPTR_0003s08280 (11)	scaffold_3:9686491-9687023(-) (11)	NA	Q9SJQ6	Protein ROS1	AT2G36490.1	demeter-like 1 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr2g008980.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215141.1.S1_s_at	A	A2TS	POPTR_0003s08280	POPTR_0003s08280 (11)//POPTR_0003s03210 (10)	scaffold_3:3629630-3630257(-) (11)//scaffold_3:9686434-9687044(-) (11)	NA	Q9SJQ6	Protein ROS1	AT2G36490.1	demeter-like 1 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr2g008980.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215142.1.S1_at	A	A1TS	POPTR_0003s08280	POPTR_0003s08280 (10)	scaffold_3:9685249-9685950(-) (10)	NA	Q9SJQ6	Protein ROS1	AT2G36490.1	demeter-like 1 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr2g008980.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215143.1.S1_at	A	A1TS	POPTR_0003s08270	POPTR_0003s08270 (11)	scaffold_3:9683273-9683723(+) (11)	NA	B3H672	Pentatricopeptide repeat-containing protein At4g17616	AT4G17616.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g31310.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g074690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215144.1.S1_at	A	A1TS	POPTR_0003s08230	POPTR_0003s08230 (11)	scaffold_3:9639757-9640183(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215145.1.S1_x_at	A	A1TS	POPTR_0003s08220	POPTR_0003s08220 (11)	scaffold_3:9631513-9631771(-) (11)	NA	NA	NA	AT4G17070.1	peptidyl-prolyl cis-trans isomerases 	LOC_Os03g01090.1	"peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed"	Medtr5g013700.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.215146.1.S1_at	A	A1TS	POPTR_0003s08200	POPTR_0003s08200 (11)	scaffold_3:9617339-9617594(+) (11)	NA	P30825	High affinity cationic amino acid transporter 1	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os04g45950.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.215147.1.S1_at	A	A1TS	POPTR_0003s08160	POPTR_0003s08160 (11)	scaffold_3:9579713-9580853(+) (11)	NA	Q9FIY7	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3	AT5G43530.1	Helicase protein with RING/U-box domain 	LOC_Os04g09800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0008270|zinc ion binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.215148.1.S1_at	A	A1TS	POPTR_0003s08130	POPTR_0003s08130 (11)	scaffold_3:9560586-9561166(+) (11)	NA	O82175	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5"	AT2G35160.1	SU(VAR)3-9 homolog 5 	LOC_Os09g19830.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr5g013560.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.215149.1.S1_at	A	A1TS	POPTR_0003s08100	POPTR_0003s08100 (11)	scaffold_3:9545417-9546330(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215150.1.S1_at	A	A1TS	POPTR_0003s08060	POPTR_0003s08060 (11)	scaffold_3:9513553-9513646(+) (11)	NA	P50582	Cell cycle serine/threonine-protein kinase hsk1	AT4G16970.1	Protein kinase superfamily protein 	LOC_Os10g41390.1	"protein kinase domain containing protein, expressed"	Medtr5g008910.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215154.1.S1_at	A	A5TS	POPTR_0019s03900	POPTR_0019s03910 (11)//POPTR_0019s03900 (11)//POPTR_0019s03890 (10)//POPTR_0019s03920 (10)//POPTR_0019s03940 (9)	scaffold_19:3945037-3945527(+) (10)//scaffold_19:3977500-3977983(+) (11)//scaffold_19:3985406-3985856(+) (11)//scaffold_19:3999136-3999627(+) (10)//scaffold_19:4017472-4017941(+) (10)	NA	Q9FYZ9	Benzoate carboxyl methyltransferase	AT3G11480.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50610.1	"SAM dependent carboxyl methyltransferase, putative, expressed"	Medtr5g020860.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.215156.1.S1_at	A	A1TS	POPTR_0013s04710	POPTR_0013s04710 (11)	scaffold_13:3246726-3247157(-) (11)	NA	O04161	Ammonium transporter 1 member 2	AT1G64780.1	ammonium transporter 1;2 	LOC_Os04g43070.1	"ammonium transporter protein, putative, expressed"	Medtr1g065600.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.215158.1.S1_at	A	A1TS	POPTR_0017s03180	POPTR_0017s03180 (11)	scaffold_17:2297820-2298115(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215159.1.S1_s_at	A	A1TS	POPTR_0014s03140	POPTR_0014s03140 (11)	scaffold_14:2538969-2539097(-) (11)	NA	NA	NA	AT5G44250.1	"Protein of unknown function DUF829, transmembrane 53 "	LOC_Os11g40070.1	expressed protein	Medtr3g148000.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21516.1.S1_at	A	A1TS	POPTR_0007s08000	POPTR_0007s08000 (11)	scaffold_7:6485720-6486679(+) (11)	NA	O34614	Putative rRNA methylase ytqB	AT1G16445.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g43582.1	"tRNA methyltran, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215160.1.S1_at	A	A1TS	POPTR_2911s00200	POPTR_2911s00200 (11)	scaffold_2911:789-1423(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215161.1.S1_s_at	A	A1TS	POPTR_0163s00240	POPTR_0163s00240 (11)	scaffold_163:33986-34228(+) (11)	NA	O15084	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	AT1G03670.1	ankyrin repeat family protein 	LOC_Os05g35310.1	"ankyrin repeat family protein, putative"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215163.1.S1_at	A	A1TS	POPTR_0018s04300	POPTR_0018s04300 (11)	scaffold_18:3636112-3636676(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g36920.1	"disease resistance protein, putative, expressed"	Medtr3g043920.1	"Peptidase aspartic, active site; NB-ARC "	NA	GO:0005515|protein binding	NA
PtpAffx.215166.1.S1_at	A	A1TS	POPTR_0010s08160	POPTR_0010s08160 (11)	scaffold_10:9110903-9110989(-) (11)	NA	Q4FE47	Putative E3 ubiquitin-protein ligase XBAT35	AT3G23280.2	XB3 ortholog 5 in Arabidopsis thaliana 	LOC_Os07g26490.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g090650.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215166.1.S1_s_at	A	A1TS	POPTR_0010s08160	POPTR_0010s08160 (11)	scaffold_10:9110981-9111429(-) (11)	NA	Q4FE47	Putative E3 ubiquitin-protein ligase XBAT35	AT3G23280.2	XB3 ortholog 5 in Arabidopsis thaliana 	LOC_Os07g26490.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g090650.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215168.1.S1_at	A	A1TS	POPTR_0025s00320	POPTR_0025s00320 (11)	scaffold_25:105148-105312(+) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166710.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.215168.1.S1_x_at	A	A1TS	POPTR_0025s00320	POPTR_0025s00320 (11)	scaffold_25:104766-105335(+) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166710.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.215169.1.S1_s_at	A	A2TS	POPTR_0001s31040	POPTR_0001s31040 (11)//POPTR_0001s31120 (11)	scaffold_1:29432000-29432095(-) (11)//scaffold_1:29477298-29477393(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT4G34131.1	UDP-glucosyl transferase 73B3 	LOC_Os01g45140.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215175.1.S1_at	A	A1TS	POPTR_0015s02330	POPTR_0015s02330 (11)	scaffold_15:1708239-1708591(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215179.1.S1_at	A	A1TS	POPTR_0015s02620	POPTR_0015s02620 (11)	scaffold_15:2009357-2009835(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215182.1.S1_s_at	A	A2TS	POPTR_0001s20310	POPTR_0001s20310 (11)//POPTR_0003s04340 (11)	scaffold_1:17989008-17989632(-) (11)//scaffold_3:5058118-5058746(+) (11)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT1G17640.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g12850.1	"RNA recognition motif containing protein, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.215183.1.S1_at	A	A1TS	POPTR_0001s20110	POPTR_0001s20110 (11)	scaffold_1:17766006-17766521(+) (11)	NA	Q9LRW1	LOB domain-containing protein 22	AT3G13850.1	LOB domain-containing protein 22 	LOC_Os08g31080.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g018690.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215184.1.S1_at	A	A1TS	POPTR_0001s20040	POPTR_0001s20040 (11)	scaffold_1:17692106-17692634(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215186.1.S1_at	A	A2TS	POPTR_0001s19990	POPTR_0001s19990 (11)//POPTR_0001s19940 (10)	scaffold_1:17496744-17497043(+) (10)//scaffold_1:17622745-17624289(-) (11)	NA	Q8KGF9	Uncharacterized RNA methyltransferase CT0009	AT3G21300.1	RNA methyltransferase family protein 	LOC_Os01g09750.2	"RNA methyltransferase protein, putative, expressed"	Medtr2g121790.1	23S rRNA methyltransferase/RumA; Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215188.1.S1_at	A	A1TS	POPTR_0001s19980	POPTR_0001s19980 (11)	scaffold_1:17601616-17602531(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215189.1.S1_at	A	A1TS	POPTR_0001s19970	POPTR_0001s19970 (11)	scaffold_1:17541045-17541318(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215194.1.S1_at	A	A1MS	POPTR_0010s20830	POPTR_0010s20830 (11)	scaffold_10:18271928-18272391(+) (11)	NA	NA	NA	AT3G55550.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os12g38610.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215195.1.S1_s_at	A	A1TS	POPTR_0028s00410	POPTR_0028s00410 (11)	scaffold_28:198076-198777(+) (11)	NA	P0CC93	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr1g108390.1	NADH/Ubiquinone/plastoquinone (complex I) 	GO:0042773|ATP synthesis coupled electron transport	GO:0008137|NADH dehydrogenase (ubiquinone) activity	NA
PtpAffx.215196.1.S1_at	A	A1MS	POPTR_0004s06420	POPTR_0004s06420 (9)	scaffold_4:5170098-5170508(+) (9)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr4g165410.1	"LRR receptor-like serine/threonine-protein kinase FLS2 precursor, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215197.1.S1_at	A	A1TS	POPTR_0009s10170	POPTR_0009s10170 (11)	scaffold_9:8806421-8806673(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215198.1.S1_s_at	A	A1TS	POPTR_0482s00195	POPTR_0482s00195 (11)	scaffold_482:10084-10620(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215199.1.S1_s_at	A	A2MS	POPTR_0007s07590	POPTR_0482s00200 (11)//POPTR_0007s07590 (11)	scaffold_482:12446-12614(+) (11)//scaffold_7:5959054-5959222(+) (11)	NA	P31414	Pyrophosphate-energized vacuolar membrane proton pump 1	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2152.1.S1_at	A	A1TS	POPTR_0001s03810	POPTR_0001s03810 (11)	scaffold_1:3092104-3093534(-) (11)	NA	NA	NA	AT3G13410.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os11g03380.1	expressed protein	Medtr4g104410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2152.1.S1_s_at	A	A1TS	POPTR_0001s03810	POPTR_0001s03810 (11)	scaffold_1:3091982-3093488(-) (11)	NA	NA	NA	AT3G13410.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os11g03380.1	expressed protein	Medtr4g104410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2152.2.S1_a_at	A	A1TS	POPTR_0001s03810	POPTR_0001s03810 (11)	scaffold_1:3094269-3095944(-) (11)	NA	NA	NA	AT3G13410.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os11g03380.1	expressed protein	Medtr4g104410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215201.1.S1_at	A	A1TS	POPTR_0010s24350	POPTR_0010s24350 (11)	scaffold_10:20607098-20607271(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.215201.1.S1_x_at	A	A1TS	POPTR_0010s24350	POPTR_0010s24350 (11)	scaffold_10:20607087-20607292(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.215202.1.S1_at	A	A1TS	POPTR_0010s24320	POPTR_0010s24320 (11)	scaffold_10:20594083-20594303(+) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.215202.1.S1_s_at	A	A1TS	POPTR_0010s24320	POPTR_0010s24320 (11)	scaffold_10:20594432-20595408(+) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.215204.1.S1_at	A	A1MS	POPTR_0004s15980	POPTR_0004s15980 (9)	scaffold_4:16463444-16464219(-) (9)	NA	Q9SXA1	Phosphatidylinositol 4-kinase alpha	AT1G49340.1	Phosphatidylinositol 3- and 4-kinase family protein 	LOC_Os03g50320.1	"phosphatidylinositol 4-kinase PI4K, putative, expressed"	Medtr3g159720.1	Ribosomal protein L2; Protein kinase-like; ; 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0004428|inositol or phosphatidylinositol kinase activity"	NA
PtpAffx.215207.1.S1_s_at	A	A2TS	POPTR_0017s06230	POPTR_0017s06230 (11)//POPTR_0017s09550 (10)	scaffold_17:4807687-4809852(-) (11)//scaffold_17:8164125-8166224(+) (10)	NA	NA	NA	AT2G31600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g23840.1	expressed protein	Medtr7g099740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215209.1.S1_at	A	A1TS	POPTR_0013s05310	POPTR_0013s05310 (10)	scaffold_13:3781655-3781760(-) (10)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215209.1.S1_s_at	A	A1TS	POPTR_0013s05310	POPTR_0013s05310 (11)	scaffold_13:3781761-3782188(-) (11)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215215.1.S1_at	A	A2MS	POPTR_0045s00220	POPTR_0045s00220 (9)//POPTR_0045s00270 (9)	scaffold_45:39754-40113(-) (9)//scaffold_45:139617-139976(-) (9)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT4G03480.1	Ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215216.1.S1_at	A	A1TS	POPTR_0045s00260	POPTR_0045s00260 (11)	scaffold_45:29397-29881(+) (10)//scaffold_45:131855-132383(+) (11)	NA	NA	NA	AT5G51160.1	Ankyrin repeat family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215217.1.S1_at	A	A2TS	POPTR_0045s00250	POPTR_0045s00250 (11)//POPTR_0045s00200 (9)	scaffold_45:25534-25786(+) (11)//scaffold_45:128033-128285(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G14500.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g020870.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215220.1.S1_at	A	A1TS	POPTR_0063s00240	POPTR_0063s00240 (11)	scaffold_19:14562328-14563075(-) (10)//scaffold_63:47460-48150(-) (11)	POPTR_0019s13700 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215221.1.S1_at	A	A1TS	POPTR_0019s13690	POPTR_0019s13690 (10)	scaffold_19:14558205-14558324(+) (10)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03500.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr4g079350.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215223.1.S1_s_at	A	A2TS	POPTR_0045s00200	POPTR_0045s00250 (11)//POPTR_0045s00200 (11)	scaffold_45:25206-25516(+) (11)//scaffold_45:127705-128015(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT1G14500.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr8g087750.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215225.1.S1_at	A	A1TS	POPTR_0019s13790	POPTR_0019s13790 (11)	scaffold_19:14645842-14646391(-) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03500.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215227.1.S1_at	A	A1MS	POPTR_0019s13770	POPTR_0019s13770 (11)	scaffold_19:14632579-14633425(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03480.1	Ankyrin repeat family protein 	LOC_Os05g35310.1	"ankyrin repeat family protein, putative"	Medtr2g037360.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215227.1.S1_x_at	A	A1MS	POPTR_0019s13770	POPTR_0019s13770 (11)	scaffold_19:14632579-14633425(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03480.1	Ankyrin repeat family protein 	LOC_Os05g35310.1	"ankyrin repeat family protein, putative"	Medtr2g037360.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215230.1.S1_at	A	A1TS	POPTR_0063s00230	POPTR_0063s00230 (11)	scaffold_63:46457-46715(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT5G02620.1	ankyrin-like1 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr4g079350.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215230.1.S1_x_at	A	A1TS	POPTR_0063s00230	POPTR_0063s00230 (11)	scaffold_63:46457-46715(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT5G02620.1	ankyrin-like1 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr4g079350.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215233.1.S1_at	A	A1TS	POPTR_0019s13660	POPTR_0019s13660 (11)	scaffold_19:14528109-14528388(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215233.1.S1_x_at	A	A1TS	POPTR_0019s13660	POPTR_0019s13660 (11)	scaffold_19:14527927-14528387(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215234.1.S1_s_at	A	A2TS	POPTR_0019s13660	POPTR_0063s00220 (11)//POPTR_0019s13660 (11)	scaffold_19:14527942-14528192(-) (11)//scaffold_19:14528137-14528363(-) (11)//scaffold_19:14528311-14528348(-) (9)//scaffold_63:29361-29416(-) (11)//scaffold_63:29532-29587(-) (11)//scaffold_63:29703-29758(-) (11)//scaffold_63:29874-29929(-) (11)//scaffold_63:30045-30100(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215235.1.S1_at	A	A1TS	POPTR_0019s13600	POPTR_0019s13600 (11)	scaffold_19:14485172-14486231(-) (11)	NA	NA	NA	AT2G20815.2	Family of unknown function (DUF566)  	NA	NA	Medtr8g102680.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215236.1.S1_at	A	A1TS	POPTR_0019s13580	POPTR_0019s13580 (10)	scaffold_19:14479887-14480311(+) (11)	NA	NA	NA	NA	NA	NA	NA	AC229695_9.1	hypothetical protein AC229695.5 37404-34347 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215237.1.S1_at	A	A1TS	POPTR_0019s13540	POPTR_0019s13540 (11)	scaffold_19:14441042-14441541(+) (11)	NA	Q96HR8	H/ACA ribonucleoprotein complex non-core subunit NAF1	AT1G03530.1	nuclear assembly factor 1 	LOC_Os05g42300.1	"NAF1 domain containing protein, expressed"	AC229695_14.1	NAF1 AC229695.5 66875-62871 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0019843|rRNA binding	GO:0005732|small nucleolar ribonucleoprotein complex
PtpAffx.21524.1.S1_at	A	A2TS	POPTR_0007s02730	POPTR_0421s00200 (11)//POPTR_0007s02730 (11)	scaffold_421:1681-1953(-) (11)//scaffold_7:1591568-1591840(-) (11)	NA	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os07g35260.2	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr2g103510.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21524.1.S1_s_at	A	A5TS	POPTR_0007s02720	POPTR_1698s00200 (11)//POPTR_0007s02720 (11)//POPTR_0421s00200 (11)//POPTR_0007s02730 (11)//POPTR_0421s00220 (10)	scaffold_1698:247-634(-) (11)//scaffold_421:1525-1912(-) (11)//scaffold_421:16331-16718(+) (11)//scaffold_7:1584733-1585120(+) (11)//scaffold_7:1591412-1591799(-) (11)	NA	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os07g35260.2	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr2g103510.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215240.1.S1_at	A	A1MS	POPTR_0019s13470	POPTR_0019s13470 (10)	scaffold_19:14388742-14389203(+) (10)	NA	NA	NA	NA	NA	LOC_Os02g56160.1	"kelch repeat protein, putative"	Medtr2g014450.1	Kelch repeat type 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215241.1.S1_at	A	A1TS	POPTR_0019s13450	POPTR_0019s13450 (11)	scaffold_19:14370354-14371789(+) (11)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT4G03400.1	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr2g096120.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215242.1.S1_at	A	A1TS	POPTR_0019s13440	POPTR_0019s13440 (11)	scaffold_19:14360611-14361024(+) (11)	NA	Q9LR67	"Pentatricopeptide repeat-containing protein At1g03560, mitochondrial"	AT1G03560.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g30930.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr5g102690.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215243.1.S1_at	A	A1TS	POPTR_0019s13430	POPTR_0019s13430 (11)	scaffold_19:14352515-14354566(-) (11)	NA	Q754F0	Protein SYM1	AT4G03410.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os03g38730.1	"peroxisomal membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.215244.1.S1_at	A	A1TS	POPTR_0019s13390	POPTR_0019s13390 (11)	scaffold_19:14299233-14299637(+) (11)	NA	Q8S8I4	Protein EPIDERMAL PATTERNING FACTOR 1	AT2G20875.1	epidermal patterning factor 1 	LOC_Os04g54490.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215245.1.S1_at	A	A1TS	POPTR_0019s13380	POPTR_0019s13380 (11)	scaffold_19:14290795-14292327(-) (11)	NA	B9N2B0	"Lipoyl synthase 2, chloroplastic"	AT5G08415.1	Radical SAM superfamily protein 	LOC_Os05g43576.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.215245.1.S1_x_at	A	A1TS	POPTR_0019s13380	POPTR_0019s13380 (11)	scaffold_19:14290795-14292327(-) (11)	NA	B9N2B0	"Lipoyl synthase 2, chloroplastic"	AT5G08415.1	Radical SAM superfamily protein 	LOC_Os05g43576.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.215246.1.S1_at	A	A1TS	POPTR_0019s13360	POPTR_0019s13360 (11)	scaffold_19:14285879-14286409(-) (11)	NA	NA	NA	AT1G65690.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os08g23460.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g094840.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.215247.1.S1_at	A	A1TS	POPTR_0019s13350	POPTR_0019s13350 (11)	scaffold_19:14281440-14281729(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215248.1.S1_at	A	A1TS	POPTR_0019s13340	POPTR_0019s13340 (10)	scaffold_19:14276837-14277523(-) (11)	NA	NA	NA	AT2G14830.1	Regulator of Vps4 activity in the MVB pathway protein 	NA	NA	Medtr4g047240.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215250.1.S1_at	A	A1TS	POPTR_0019s13310	POPTR_0019s13310 (10)	scaffold_19:14249670-14250257(+) (10)	NA	NA	NA	AT2G20760.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215251.1.S1_at	A	A1TS	POPTR_0019s13280	POPTR_0019s13280 (11)	scaffold_19:14225224-14225745(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03460.1	Ankyrin repeat family protein 	LOC_Os05g35310.1	"ankyrin repeat family protein, putative"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215252.1.S1_at	A	A1TS	POPTR_0019s13270	POPTR_0019s13270 (11)	scaffold_19:14212771-14213557(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215253.1.S1_at	A	A2TS	POPTR_0019s13260	POPTR_0019s13260 (11)//POPTR_0163s00250 (11)	scaffold_163:46450-46665(+) (11)//scaffold_19:14208758-14208973(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G03670.1	ankyrin repeat family protein 	LOC_Os05g35310.1	"ankyrin repeat family protein, putative"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215254.1.S1_at	A	A1TS	POPTR_0019s13250	POPTR_0019s13250 (11)	scaffold_19:14195688-14198271(-) (11)	NA	NA	NA	AT2G20725.1	CAAX amino terminal protease family protein 	LOC_Os08g33900.1	"CAAX amino terminal protease family protein, putative"	Medtr1g125900.3	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.215255.1.S1_at	A	A1TS	POPTR_0019s13240	POPTR_0019s13240 (10)	scaffold_19:14187121-14188155(-) (10)	NA	NA	NA	AT4G28260.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 50 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g35710.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215256.1.S1_at	A	A2TS	POPTR_0019s13200	POPTR_0019s13200 (11)//POPTR_0575s00210 (9)	scaffold_19:14155789-14156213(+) (11)//scaffold_575:8197-8624(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215257.1.S1_at	A	A1TS	POPTR_0019s13180	POPTR_0019s13180 (10)	scaffold_19:14142186-14142775(+) (11)	NA	Q9Y7P0	Riboflavin synthase alpha chain	AT2G20690.1	lumazine-binding family protein 	LOC_Os12g35580.1	"riboflavin synthase alpha chain, putative, expressed"	Medtr4g078830.1	Lumazine-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215258.1.S1_at	A	A1MS	POPTR_0019s13165	POPTR_0019s13165 (11)	scaffold_19:14131813-14132123(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g084940.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215259.1.S1_at	A	A1TS	POPTR_0019s13160	POPTR_0019s13160 (11)	scaffold_19:14130489-14131004(-) (11)	NA	Q6H5X0	Putative ripening-related protein 2	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	Medtr7g011830.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215261.1.S1_at	A	A1MS	POPTR_0019s13130	POPTR_0019s13130 (11)	scaffold_19:14117642-14118190(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G24590.2	TCV-interacting protein 	LOC_Os09g38000.1	"no apical meristem protein, putative"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.215262.1.S1_s_at	A	A2TS	POPTR_0019s13070	POPTR_0019s13090 (11)//POPTR_0019s13070 (11)	scaffold_19:14076836-14077658(-) (11)//scaffold_19:14084270-14091967(-) (11)	POPTR_0019s13080 (8)	NA	NA	AT4G20970.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01870.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr4g108270.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.215264.1.S1_s_at	A	A1TS	POPTR_0019s13060	POPTR_0019s13060 (11)	scaffold_19:14066154-14066637(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215265.1.S1_s_at	A	A1TS	POPTR_0019s13060	POPTR_0019s13060 (11)	scaffold_19:14066829-14067283(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215266.1.S1_at	A	A1TS	POPTR_0019s13050	POPTR_0019s13050 (11)	scaffold_19:14058840-14060791(+) (11)	NA	NA	NA	AT5G10460.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g42950.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr4g128280.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.215267.1.S1_s_at	A	A1TS	POPTR_0019s13010	POPTR_0019s13010 (11)	scaffold_19:14017776-14017979(+) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os05g23990.1	"rp3 protein, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215268.1.S1_s_at	A	A1TS	POPTR_0019s13010	POPTR_0019s13010 (11)	scaffold_19:14016033-14016567(+) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os05g23990.1	"rp3 protein, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215269.1.S1_s_at	A	A2TS	POPTR_0019s12800	POPTR_0019s12950 (11)//POPTR_0019s12800 (11)	scaffold_19:13749921-13750194(+) (11)//scaffold_19:13986152-13986425(+) (11)	NA	NA	NA	AT3G59770.2	sacI homology domain-containing protein / WW domain-containing protein 	NA	NA	Medtr4g128320.1	"WW/Rsp5/WWP; Synaptojanin, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.215274.1.S1_at	A	A1TS	POPTR_0019s12740	POPTR_0019s12740 (11)	scaffold_19:13694751-13695180(+) (11)	NA	NA	NA	AT5G56940.1	Ribosomal protein S16 family protein 	LOC_Os08g40610.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.215275.1.S1_at	A	A1TS	POPTR_0089s00200	POPTR_0089s00200 (9)	scaffold_89:23202-26028(+) (9)	POPTR_0496s00200 (7)	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.215279.1.S1_s_at	A	A2TS	POPTR_0016s12640	POPTR_0016s12650 (11)//POPTR_0016s12640 (11)	scaffold_16:12022956-12023117(-) (11)//scaffold_16:12031933-12032094(-) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os06g30810.1	OsMADS75 - MADS-box family gene with M-alpha type-box	Medtr2g130230.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.215289.1.S1_s_at	A	A1TS	POPTR_0007s10345	POPTR_0007s10345 (11)	scaffold_7:10218467-10218642(+) (11)	NA	Q6Q9I2	MADS-box transcription factor 15	AT1G77980.1	AGAMOUS-like 66 	LOC_Os06g11970.1	"OsMADS63 - MADS-box family gene with MIKC* type-box, expressed"	AC232874_24.1	"Transcription factor, MADS-box AC232874.1 73354-75197 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.21529.1.S1_s_at	A	A1TS	POPTR_0002s04680	POPTR_0002s04680 (11)	scaffold_2:2922979-2924582(-) (11)	POPTR_0005s23880 (8)	Q96PP9	Guanylate-binding protein 4	AT2G38840.1	Guanylate-binding family protein 	LOC_Os03g58240.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.215295.1.S1_at	A	A1TS	POPTR_0006s18480	POPTR_0006s18480 (9)	scaffold_6:16919355-16919817(-) (10)	NA	NA	NA	AT5G57500.1	Galactosyltransferase family protein 	LOC_Os02g54370.1	"hypro1, putative, expressed"	Medtr8g128750.1	"Glycosyl transferase, family 31 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215296.1.S1_at	A	A1TS	POPTR_0006s18420	POPTR_0006s18420 (11)	scaffold_6:16849775-16850148(-) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G57480.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g26260.1	"AAA-type ATPase family protein, putative, expressed"	Medtr8g128800.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.215297.1.S1_at	A	A1TS	POPTR_0006s18410	POPTR_0006s18410 (11)	scaffold_6:16820230-16821055(-) (11)	NA	Q5ZK17	SET domain-containing protein 6	AT2G18850.1	SET domain-containing protein 	LOC_Os08g14660.1	"SET domain containing protein, expressed"	Medtr8g128830.1	"Putative methyltransferase, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215298.1.S1_at	A	A1TS	POPTR_0006s18400	POPTR_0006s18400 (11)	scaffold_6:16810977-16811413(-) (11)	NA	NA	NA	AT4G30240.1	Syntaxin/t-SNARE family protein 	LOC_Os08g14640.1	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr8g128850.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.215299.1.S1_at	A	A1TS	POPTR_0006s18390	POPTR_0006s18390 (11)	scaffold_6:16785232-16785520(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2153.1.A1_at	A	A1TS	POPTR_0008s02940	POPTR_0008s02940 (9)	scaffold_8:1528236-1528530(+) (9)	NA	NA	NA	AT5G04480.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os10g39900.1	"glycosyltransferase family protein 1, putative, expressed"	NA	NA	GO:0009058|biosynthetic process	NA	NA
PtpAffx.2153.2.A1_at	A	A1TS	POPTR_0010s23830	POPTR_0010s23830 (10)	scaffold_10:20298395-20298854(-) (10)	NA	NA	NA	AT5G04480.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os10g39900.1	"glycosyltransferase family protein 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215300.1.S1_at	A	A1TS	POPTR_0006s18380	POPTR_0006s18380 (11)	scaffold_6:16782762-16783338(-) (11)	NA	NA	NA	AT4G30230.1	unknown protein; Has 42 Blast hits to 42 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g128920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215302.1.S1_at	A	A1TS	POPTR_0006s18300	POPTR_0006s18300 (11)	scaffold_6:16646588-16647158(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215304.1.S1_at	A	A1TS	POPTR_0006s18290	POPTR_0006s18290 (11)	scaffold_6:16640967-16641384(+) (11)	NA	NA	NA	AT4G25850.2	OSBP(oxysterol binding protein)-related protein 4B 	NA	NA	Medtr8g129110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215306.1.S1_s_at	A	A2TS	POPTR_0006s18250	POPTR_0006s18250 (11)//POPTR_0065s00240 (10)	scaffold_395:14373-14625(-) (11)//scaffold_49:156807-157059(-) (11)//scaffold_6:16547803-16548055(+) (11)//scaffold_65:66827-67074(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215308.1.S1_s_at	A	A2TS	POPTR_0001s39360	POPTR_0001s39360 (11)//POPTR_0001s39400 (11)	scaffold_1:38511922-38513255(-) (11)//scaffold_1:38524890-38526165(-) (11)//scaffold_1:38562227-38563728(-) (11)//scaffold_1:38654337-38655625(+) (11)	POPTR_0001s39320 (8)	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215309.1.S1_at	A	A1MS	POPTR_0006s18030	POPTR_0006s18030 (10)	scaffold_6:16392912-16393295(-) (10)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT2G18890.2	Protein kinase superfamily protein 	LOC_Os04g56060.1	"protein kinase domain containing protein, expressed"	Medtr8g129250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215310.1.S1_at	A	A1TS	POPTR_0006s17970	POPTR_0006s17970 (11)	scaffold_6:16278699-16279692(-) (11)	NA	Q9ZPI1	Lysyl-tRNA synthetase	AT3G11710.1	lysyl-tRNA synthetase 1 	LOC_Os03g38980.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr2g041510.2	"Aspartyl-tRNA synthetase, class IIb; nucleic acid binding, OB-fold, tRNA/helicase-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.215311.1.S1_at	A	A1TS	POPTR_0006s17920	POPTR_0006s17920 (11)	scaffold_6:16181579-16182000(-) (11)	NA	NA	NA	AT5G57340.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr2g041600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215312.1.S1_at	A	A1TS	POPTR_0006s17880	POPTR_0006s17880 (11)	scaffold_6:16101194-16101663(+) (11)	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT2G19070.1	spermidine hydroxycinnamoyl transferase 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	Medtr8g129460.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.215313.1.S1_at	A	A1TS	POPTR_0006s17870	POPTR_0006s17870 (11)	scaffold_6:16084777-16087244(+) (11)	NA	Q9C5E7	"Pumilio homolog 6, chloroplastic"	AT4G25880.2	pumilio 6 	LOC_Os08g40830.3	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.215314.1.S1_at	A	A1TS	POPTR_0006s17860	POPTR_0006s17860 (11)	scaffold_6:16080327-16081567(+) (11)	NA	Q9C5E7	"Pumilio homolog 6, chloroplastic"	AT4G25880.1	pumilio 6 	LOC_Os08g40830.3	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.215315.1.S1_at	A	A1TS	POPTR_0006s17830	POPTR_0006s17830 (11)	scaffold_6:16043083-16043985(-) (11)	NA	NA	NA	AT2G19880.2	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os01g67870.1	expressed protein	Medtr4g159860.1	"ceramide glucosyltransferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215317.1.S1_at	A	A1TS	POPTR_0006s17820	POPTR_0006s17820 (11)	scaffold_6:16027370-16027891(-) (11)	NA	NA	NA	AT4G15450.1	Senescence/dehydration-associated protein-related 	LOC_Os01g52480.1	"senescence-associated protein, putative, expressed"	Medtr4g159850.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215318.1.S1_s_at	A	A1TS	POPTR_0015s12340	POPTR_0015s12340 (11)	scaffold_15:12627890-12628111(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215321.1.S1_s_at	A	A1TS	POPTR_0001s04900	POPTR_0001s04900 (11)	scaffold_1:3756584-3757280(+) (11)	NA	Q8LAP6	"Probable plastid-lipid-associated protein 12, chloroplastic"	AT1G51110.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os07g28790.1	"PAP fibrillin family domain containing protein, expressed"	Medtr1g146620.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.215334.1.S1_at	A	A1TS	POPTR_0016s12560	POPTR_0016s12560 (10)	scaffold_16:11984737-11984913(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215335.1.S1_at	A	A1TS	POPTR_0004s20870	POPTR_0004s20870 (11)	scaffold_4:20245238-20245555(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039190.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215335.1.S1_x_at	A	A1TS	POPTR_0004s20870	POPTR_0004s20870 (11)	scaffold_4:20245326-20245555(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039190.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215338.1.S1_at	A	A1TS	POPTR_0091s00200	POPTR_0091s00200 (11)	scaffold_91:4913-5347(-) (11)	NA	NA	NA	AT2G45320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 45 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g37430.2	expressed protein	Medtr4g160680.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215338.1.S1_s_at	A	A2TS	POPTR_0014s06410	POPTR_0014s06410 (11)//POPTR_0091s00200 (10)	scaffold_14:4868056-4869504(-) (11)//scaffold_91:4146-5357(-) (11)	NA	NA	NA	AT2G45320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 45 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g37430.2	expressed protein	Medtr4g069860.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21534.1.S1_at	A	A1TS	POPTR_0008s07530	POPTR_0008s07530 (11)	scaffold_8:4610485-4610690(-) (11)	NA	Q9SPE6	Alpha-soluble NSF attachment protein 2	AT3G56190.1	alpha-soluble NSF attachment protein 2 	LOC_Os08g18110.1	"alpha-soluble NSF attachment protein, putative, expressed"	Medtr3g097220.1	Tetratricopeptide-like helical 	GO:0006886|intracellular protein transport	NA	GO:0005783|endoplasmic reticulum||GO:0005794|Golgi apparatus
PtpAffx.21534.2.S1_at	A	A1TS	POPTR_0010s18920	POPTR_0010s18920 (10)	scaffold_10:17013272-17013687(+) (10)	NA	P93798	Alpha-soluble NSF attachment protein	AT3G56190.1	alpha-soluble NSF attachment protein 2 	LOC_Os08g18110.1	"alpha-soluble NSF attachment protein, putative, expressed"	Medtr3g097220.1	Tetratricopeptide-like helical 	GO:0006886|intracellular protein transport	NA	GO:0005783|endoplasmic reticulum||GO:0005794|Golgi apparatus
PtpAffx.215341.1.S1_at	A	A1TS	POPTR_0015s05770	POPTR_0015s05770 (11)	scaffold_15:6123739-6124197(-) (11)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g46290.1	"lipase, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.215343.1.S1_at	A	A1TS	POPTR_0015s05750	POPTR_0015s05750 (10)	scaffold_15:6098737-6099335(-) (11)	NA	NA	NA	AT5G52900.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g125930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215344.1.S1_at	A	A1TS	POPTR_0015s05730	POPTR_0015s05730 (11)	scaffold_15:6083460-6084379(+) (11)	NA	NA	NA	AT5G24030.1	SLAC1 homologue 3 	LOC_Os01g43460.2	"C4-dicarboxylate transporter/malic acid transport protein, expressed"	Medtr6g043970.1	C4-dicarboxylate transporter/malic acid transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215345.1.S1_at	A	A1TS	POPTR_0015s05720	POPTR_0015s05720 (11)	scaffold_15:6058301-6059762(-) (11)	NA	Q6AZT2	Spastin	AT5G52882.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g12660.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g009960.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.215346.1.S1_at	A	A1TS	POPTR_0015s05690	POPTR_0015s05690 (10)	scaffold_15:6041161-6041740(-) (11)	NA	NA	NA	AT5G52870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g12640.2	expressed protein	Medtr1g126380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215348.1.S1_at	A	A2TS	POPTR_0012s03300	POPTR_0015s05630 (11)//POPTR_0012s03300 (11)	scaffold_12:2620524-2620737(+) (11)//scaffold_15:5972315-5972528(-) (11)	NA	NA	NA	AT3G19180.1	paralog of ARC6 	LOC_Os04g57920.1	"OsFBX154 - F-box domain containing protein, expressed"	Medtr6g089760.1	"ARC6H, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215348.1.S1_s_at	A	A2TS	POPTR_0012s03300	POPTR_0012s03300 (11)//POPTR_0015s05630 (9)	scaffold_12:2620791-2621950(+) (11)//scaffold_15:5971159-5972261(-) (9)	NA	NA	NA	AT3G19180.1	paralog of ARC6 	LOC_Os04g57920.1	"OsFBX154 - F-box domain containing protein, expressed"	Medtr6g089760.1	"ARC6H, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215349.1.S1_at	A	A1MS	POPTR_0012s03310	POPTR_0012s03310 (9)	scaffold_12:2630079-2630162(+) (9)	NA	Q8LAD2	"Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial"	AT5G23250.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.215351.1.S1_at	A	A1TS	POPTR_0015s05590	POPTR_0015s05590 (11)	scaffold_15:5936918-5937041(+) (11)	NA	Q9FGY4	F-box protein At5g49610	AT5G49610.1	F-box family protein 	LOC_Os07g35050.1	"OsFBX237 - F-box domain containing protein, expressed"	Medtr2g037610.2	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215352.1.S1_s_at	A	A1TS	POPTR_0015s05570	POPTR_0015s05570 (11)	scaffold_15:5912095-5912205(-) (11)	NA	NA	NA	AT1G11220.1	Protein of unknown function (DUF761) 	LOC_Os07g37620.1	"fiber expressed protein, putative, expressed"	Medtr2g095300.1	"Protein of unknown function DUF761, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215353.1.S1_at	A	A1TS	POPTR_0015s05565	POPTR_0015s05565 (11)	scaffold_15:5905504-5906077(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215354.1.S1_at	A	A1TS	POPTR_0015s05560	POPTR_0015s05560 (11)	scaffold_15:5896910-5900787(-) (11)	NA	Q91WL8	WW domain-containing oxidoreductase	AT4G27760.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g02470.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g090260.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.215355.1.S1_at	A	A1TS	POPTR_0015s05540	POPTR_0015s05540 (11)	scaffold_15:5870016-5870579(-) (11)	NA	O24301	Sucrose synthase 2	AT1G73370.1	sucrose synthase 6 	LOC_Os04g24430.1	"sucrose synthase, putative, expressed"	Medtr5g084740.1	Sucrose synthase; N-6 Adenine-specific DNA methylase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.215358.1.S1_at	A	A1TS	POPTR_0015s05510	POPTR_0015s05510 (11)	scaffold_15:5840296-5840561(-) (11)	NA	Q9WTW5	Solute carrier family 22 member 3	AT1G73220.1	organic cation/carnitine transporter1 	LOC_Os07g37510.1	"organic cation transporter-related, putative"	Medtr4g031840.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215359.1.S1_at	A	A1TS	POPTR_0015s05490	POPTR_0015s05490 (11)	scaffold_15:5831019-5832833(+) (11)	NA	Q9Z7H1	UPF0176 protein CPn_0734/CP_0012/CPj0734/CpB0762	AT1G17850.2	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os03g64350.1	"rhodanese-like domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215360.1.S1_at	A	A1TS	POPTR_0015s05480	POPTR_0015s05480 (11)	scaffold_15:5821848-5823071(+) (11)	NA	NA	NA	AT3G17670.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os04g57780.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g019290.1	Tetratricopeptide-like helical; Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215361.1.S1_at	A	A1TS	POPTR_0015s05460	POPTR_0015s05460 (11)	scaffold_15:5808264-5808659(+) (11)	NA	NA	NA	AT1G48405.1	Kinase interacting (KIP1-like) family protein 	LOC_Os03g01980.1	"KIP1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215362.1.S1_at	A	A1TS	POPTR_0015s05450	POPTR_0015s05450 (11)	scaffold_15:5801065-5803822(-) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT3G17730.1	NAC domain containing protein 57 	LOC_Os09g38000.1	"no apical meristem protein, putative"	Medtr3g086750.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.215363.1.S1_at	A	A1TS	POPTR_0015s05440	POPTR_0015s05440 (11)	scaffold_15:5795632-5795911(+) (11)	NA	NA	NA	AT1G53345.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in 75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37 (source: NCBI BLink). "	LOC_Os02g45950.1	expressed protein	Medtr4g121710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215365.1.S1_at	A	A1TS	POPTR_0015s05430	POPTR_0015s05430 (11)	scaffold_15:5786317-5786586(+) (11)	NA	P92973	Protein CCA1	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215366.1.S1_at	A	A1TS	POPTR_0015s05420	POPTR_0015s05420 (11)	scaffold_15:5776272-5776737(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215368.1.S1_at	A	A1TS	POPTR_0015s05380	POPTR_0015s05380 (11)	scaffold_15:5739112-5739627(+) (11)	NA	Q5PNY6	U-box domain-containing protein 21	AT5G37490.1	ARM repeat superfamily protein 	LOC_Os03g13740.1	"immediate-early fungal elicitor protein CMPG1, putative, expressed"	Medtr6g080480.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.215369.1.S1_at	A	A1TS	POPTR_0015s05370	POPTR_0015s05370 (11)	scaffold_15:5736318-5736389(+) (11)	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr6g080390.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.215369.1.S1_x_at	A	A1TS	POPTR_0015s05370	POPTR_0015s05370 (11)	scaffold_15:5736184-5736499(+) (11)	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr6g080390.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.215371.1.S1_at	A	A1TS	POPTR_0015s05340	POPTR_0015s05340 (11)	scaffold_15:5677640-5679353(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT5G16560.1	Homeodomain-like superfamily protein 	LOC_Os09g23200.1	"KANADI1, putative"	Medtr3g087010.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215372.1.S1_at	A	A1TS	POPTR_0015s05330	POPTR_0015s05330 (11)	scaffold_15:5674378-5674691(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215373.1.S1_s_at	A	A1TS	POPTR_0015s05320	POPTR_0015s05320 (11)	scaffold_15:5668764-5668879(-) (11)	NA	NA	NA	AT4G14819.1	Protein of unknown function (DUF1677) 	LOC_Os03g46300.1	conserved hypothetical protein	Medtr5g006550.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215374.1.S1_at	A	A1TS	POPTR_0015s05270	POPTR_0015s05270 (11)	scaffold_15:5643004-5644027(+) (11)	NA	Q43714	(+)-delta-cadinene synthase isozyme A	AT5G23960.2	terpene synthase 21 	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.215377.1.S1_at	A	A1TS	POPTR_0015s05220	POPTR_0015s05220 (11)	scaffold_15:5591461-5591825(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G69600.1	zinc finger homeodomain  1 	LOC_Os05g50310.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr6g077190.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215379.1.S1_at	A	A1TS	POPTR_0015s05190	POPTR_0015s05190 (11)	scaffold_15:5556669-5557211(+) (11)	NA	NA	NA	AT2G01930.2	basic pentacysteine1 	LOC_Os10g02584.3	"GAGA-binding protein, putative, expressed"	Medtr4g151960.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215380.1.S1_at	A	A1TS	POPTR_0015s05160	POPTR_0015s05160 (11)	scaffold_15:5498357-5499946(+) (11)	NA	Q9H7Z3	UPF0614 protein C14orf102	AT3G17740.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). 	LOC_Os02g53270.1	expressed protein	Medtr3g166340.1	Protein of unknown function DUF1740 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215381.1.S1_s_at	A	A1TS	POPTR_0015s05140	POPTR_0015s05140 (11)	scaffold_15:5484634-5485130(+) (11)	NA	Q09690	Dual specificity protein kinase pom1	AT1G73460.1	Protein kinase superfamily protein 	LOC_Os03g51020.1	expressed protein	Medtr6g078370.1	"protein kinase family protein, related "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215382.1.S1_x_at	A	A1TS	POPTR_0015s05130	POPTR_0015s05130 (11)	scaffold_15:5443167-5443661(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os03g51110.1	"MYB family transcription factor, putative, expressed"	Medtr6g078130.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215383.1.S1_at	A	A1TS	POPTR_0015s05110	POPTR_0015s05110 (11)	scaffold_15:5430697-5431100(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g154480.1	Pyridoxal phosphate-dependent deaminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215384.1.S1_at	A	A1MS	POPTR_0015s05090	POPTR_0015s05090 (11)	scaffold_15:5419812-5420126(-) (11)	NA	Q9LD37	"Probable cyclic nucleotide-gated ion channel 20, chloroplastic"	AT3G17700.1	cyclic nucleotide-binding transporter 1 	LOC_Os02g53340.2	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr6g074020.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.215385.1.S1_at	A	A1TS	POPTR_0015s05050	POPTR_0015s05050 (11)	scaffold_15:5350726-5351030(+) (11)	NA	Q9FX31	Homeobox-leucine zipper protein HDG11	AT1G73360.1	homeodomain GLABROUS 11 	LOC_Os06g10600.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.215386.1.S1_at	A	A1TS	POPTR_0015s05040	POPTR_0015s05040 (11)	scaffold_15:5292368-5292832(+) (11)	NA	O22881	Potassium transporter 2	AT2G40540.2	potassium transporter 2 	LOC_Os02g49760.2	"potassium transporter, putative, expressed"	Medtr4g154610.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.215387.1.S1_at	A	A1TS	POPTR_0015s05030	POPTR_0015s05030 (11)	scaffold_15:5264767-5265111(+) (11)	NA	Q9SY59	NF-X1-type zinc finger protein NFXL1	AT1G10170.1	NF-X-like 1 	LOC_Os06g14190.1	"NF-X1-type zinc finger protein, putative, expressed"	Medtr6g080720.1	"Zinc finger, NF-X1-type; Zinc finger, RING-type; Zinc finger, PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.215388.1.S1_at	A	A1TS	POPTR_0015s04990	POPTR_0015s04990 (10)	scaffold_15:5223651-5224674(+) (10)	NA	A8MQA3	Pentatricopeptide repeat-containing protein At4g21065	AT4G21065.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g05560.1	conserved hypothetical protein	Medtr3g012790.1	"pentatricopeptide, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215390.1.S1_x_at	A	A1TS	POPTR_0012s00250	POPTR_0012s00250 (10)	scaffold_12:33387-33783(-) (10)	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os01g06760.1	"verticillium wilt disease resistance protein Ve2, putative"	Medtr3g030930.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.215391.1.S1_at	A	A1TA	POPTR_0015s02010	POPTR_0015s02010 (11)	scaffold_15:1392270-1392789(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr1g034440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215394.1.S1_s_at	A	A2TA	POPTR_0019s13660	POPTR_0063s00220 (11)//POPTR_0019s13660 (11)	scaffold_19:14527957-14528090(+) (11)//scaffold_63:29281-29467(+) (11)//scaffold_63:29455-29638(+) (11)//scaffold_63:29626-29809(+) (11)//scaffold_63:29797-29980(+) (11)//scaffold_63:29968-30151(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215403.1.S1_at	A	A1TS	POPTR_0016s05900	POPTR_0016s05900 (9)	scaffold_16:3852857-3853302(+) (9)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G38180.1	FAR1-related sequence 5 	LOC_Os06g07010.1	"transposon protein, putative, unclassified, expressed"	Medtr5g106890.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.215405.1.S1_at	A	A1TS	POPTR_0007s01050	POPTR_0007s01050 (10)	scaffold_7:576866-577969(-) (11)	NA	NA	NA	AT1G03780.2	targeting protein for XKLP2 	LOC_Os07g32390.1	"targeting protein-related, putative, expressed"	Medtr4g108340.1	"targeting protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215408.1.S1_s_at	A	A1TS	POPTR_0008s23160	POPTR_0008s23160 (11)	scaffold_8:18419805-18419869(+) (11)	NA	Q9SSD1	Protein TOO MANY MOUTHS	AT2G42800.1	receptor like protein 29 	LOC_Os05g45430.1	"TOO MANY MOUTHS precursor, putative, expressed"	Medtr2g024410.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.215410.1.S1_s_at	A	A1TS	POPTR_0004s10970	POPTR_0004s10970 (11)	scaffold_4:9539399-9539542(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215412.1.S1_at	A	A1MS	POPTR_0011s03270	POPTR_0011s03270 (9)	scaffold_11:3409722-3410189(+) (9)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os07g35290.1	"TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr1g025630.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215413.1.S1_x_at	A	A1TS	POPTR_0117s00220	POPTR_0117s00220 (10)	scaffold_117:45996-46209(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g42930.1	"disease resistance protein RGA1, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.215414.1.S1_s_at	A	A2TS	POPTR_0004s11050	POPTR_0017s14590 (11)//POPTR_0004s11050 (11)	scaffold_17:14585518-14586639(-) (11)//scaffold_4:9667202-9668319(-) (11)	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.2	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr7g015500.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.215415.1.S1_at	A	A2TS	POPTR_0017s13770	POPTR_0017s14590 (11)//POPTR_0017s13770 (11)	scaffold_17:13943078-13943122(+) (11)//scaffold_17:14586757-14586801(-) (11)	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.215417.1.S1_at	A	A1TS	POPTR_0017s14560	POPTR_0017s14560 (11)	scaffold_17:14560532-14560937(-) (11)	NA	O94915	Protein furry homolog-like	AT5G15680.1	ARM repeat superfamily protein 	LOC_Os02g58410.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215418.1.S1_at	A	A1TS	POPTR_0017s14540	POPTR_0017s14540 (11)	scaffold_17:14558907-14559290(+) (11)	NA	Q54Y67	Probable biogenesis of lysosome-related organelles complex 1 subunit 2	AT5G49550.1	"CONTAINS InterPro DOMAIN/s: Biogenesis of lysosome-related organelles complex-1, subunit 2 (InterPro:IPR019269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g09780.1	"phytoene dehydrogenase-like, putative, expressed"	Medtr3g040970.1	"phytoene dehydrogenase-like, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215419.1.S1_at	A	A1MS	POPTR_0017s14520	POPTR_0017s14520 (11)	scaffold_17:14540441-14540897(-) (11)	NA	Q8L7E5	WPP domain-interacting tail-anchored protein 1	AT5G11390.1	WPP domain-interacting protein 1 	LOC_Os05g15140.1	expressed protein	Medtr7g015720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215420.1.S1_at	A	A1TS	POPTR_0017s14510	POPTR_0017s14510 (11)	scaffold_17:14536422-14536984(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215421.1.S1_at	A	A1TS	POPTR_0017s14490	POPTR_0017s14490 (11)	scaffold_17:14516704-14517194(-) (11)	NA	NA	NA	AT3G30530.1	basic leucine-zipper 42 	LOC_Os02g49560.1	"bZIP transcription factor domain containing protein, expressed"	AC146721_11.1	"bZIP transcription factor, bZIP_1 AC146721.7 56450-55611 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.215422.1.S1_at	A	A1TS	POPTR_0017s14460	POPTR_0017s14460 (11)	scaffold_17:14502145-14502424(+) (11)	NA	NA	NA	AT5G38790.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215423.1.S1_at	A	A1TS	POPTR_0017s14450	POPTR_0017s14450 (11)	scaffold_17:14497250-14497507(+) (11)	NA	NA	NA	AT2G24762.1	glutamine dumper 4 	NA	NA	Medtr8g128110.1	"ATGDU4 {Arabidopsis, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215424.1.S1_at	A	A1TS	POPTR_0017s14380	POPTR_0017s14380 (11)	scaffold_17:14451508-14451724(-) (11)	NA	NA	NA	AT1G33390.1	RNA helicase family protein 	LOC_Os02g50370.1	"helicase domain-containing protein, putative, expressed"	Medtr8g138550.1	"Sec1-like protein; Helicase, C-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215425.1.S1_at	A	A1TS	POPTR_0017s14370	POPTR_0017s14370 (11)	scaffold_17:14450914-14451208(-) (11)	NA	NA	NA	AT1G33390.1	RNA helicase family protein 	LOC_Os02g50370.1	"helicase domain-containing protein, putative, expressed"	Medtr4g024790.1	"Helicase, C-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215426.1.S1_at	A	A1TS	POPTR_0017s14350	POPTR_0017s14350 (11)	scaffold_17:14432190-14432602(+) (11)	NA	Q9M891	"Pentatricopeptide repeat-containing protein At3g02490, mitochondrial"	AT3G02490.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g73950.2	"PPR repeat containing protein, expressed"	Medtr5g099370.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215427.1.S1_at	A	A1TS	POPTR_0017s14340	POPTR_0017s14340 (10)	scaffold_17:14425173-14425600(-) (10)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.215428.1.S1_at	A	A1TS	POPTR_0017s14300	POPTR_0017s14300 (11)	scaffold_17:14409845-14410348(+) (11)	NA	Q9FKR3	Pentatricopeptide repeat-containing protein At5g38730	AT5G38730.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g58139.2	"OsSigP1 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed"	Medtr8g042960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215429.1.S1_at	A	A1TS	POPTR_0017s14290	POPTR_0017s14290 (11)	scaffold_17:14404893-14406179(-) (11)	NA	NA	NA	AT5G38720.1	unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). 	LOC_Os02g49620.1	expressed protein	Medtr4g134160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215429.1.S1_x_at	A	A1TS	POPTR_0017s14290	POPTR_0017s14290 (11)	scaffold_17:14404268-14406179(-) (11)	NA	NA	NA	AT5G38720.1	unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). 	LOC_Os02g49620.1	expressed protein	Medtr4g134160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215430.1.S1_at	A	A1TS	POPTR_0017s14210	POPTR_0017s14210 (11)	scaffold_17:14352174-14354565(-) (11)	NA	NA	NA	AT1G67170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). 	LOC_Os02g09890.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g121450.1	"Protein kinase PKN/PRK1, effector, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215431.1.S1_s_at	A	A2TS	POPTR_0017s14190	POPTR_0017s14190 (11)//POPTR_0017s14200 (11)	scaffold_17:14337542-14337678(+) (11)//scaffold_17:14343381-14343517(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g005490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215432.1.S1_at	A	A1TS	POPTR_0017s14170	POPTR_0017s14170 (11)	scaffold_17:14329992-14330162(-) (11)	NA	NA	NA	AT5G15900.1	TRICHOME BIREFRINGENCE-LIKE 19 	LOC_Os06g16240.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215432.1.S1_x_at	A	A1TS	POPTR_0017s14170	POPTR_0017s14170 (11)	scaffold_17:14329992-14330162(-) (11)	NA	NA	NA	AT5G15900.1	TRICHOME BIREFRINGENCE-LIKE 19 	LOC_Os06g16240.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215433.1.S1_at	A	A1TS	POPTR_0017s14140	POPTR_0017s14140 (11)	scaffold_17:14310940-14310986(-) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT5G38560.1	Protein kinase superfamily protein 	LOC_Os01g02040.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g093550.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215433.1.S1_s_at	A	A2TS	POPTR_0004s10490	POPTR_0004s10490 (11)//POPTR_0017s14140 (11)	scaffold_17:14310927-14311112(-) (11)//scaffold_4:9023696-9023881(-) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT5G38560.1	Protein kinase superfamily protein 	LOC_Os01g53640.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g035520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215434.1.S1_at	A	A1TS	POPTR_0017s14130	POPTR_0017s14130 (11)	scaffold_17:14302834-14303164(-) (11)	NA	P51110	Dihydroflavonol-4-reductase	AT5G14700.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g50250.1	"cinnamoyl-CoA reductase-related, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215434.1.S1_s_at	A	A1TS	POPTR_0017s14130	POPTR_0017s14130 (11)	scaffold_17:14302821-14303338(-) (11)	NA	P51110	Dihydroflavonol-4-reductase	AT5G14700.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g50250.1	"cinnamoyl-CoA reductase-related, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215435.1.S1_at	A	A1TS	POPTR_0017s14070	POPTR_0017s14070 (11)	scaffold_17:14223607-14224214(-) (11)	NA	NA	NA	AT1G80360.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g08270.1	"aminotransferase, classes I and II, domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215436.1.S1_at	A	A1TS	POPTR_0017s14060	POPTR_0017s14060 (11)	scaffold_17:14216994-14217844(-) (11)	NA	Q6DD45	Zinc finger CCHC domain-containing protein 8	AT5G38600.1	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein 	LOC_Os06g30020.1	"PSP domain containing protein, expressed"	AC233657_33.1	"Zinc finger, CCHC-type; PSP, proline-rich AC233657.1 169292-178036 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.215437.1.S1_at	A	A1TS	POPTR_0017s14050	POPTR_0017s14050 (11)	scaffold_17:14210118-14210574(+) (11)	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT1G67230.1	little nuclei1 	LOC_Os02g48010.1	"nuclear matrix constituent protein 1-like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215438.1.S1_at	A	A1TS	POPTR_0017s14020	POPTR_0017s14020 (11)	scaffold_17:14186627-14187119(-) (11)	NA	Q9FGW0	Putative fasciclin-like arabinogalactan protein 20	AT5G40940.1	putative fasciclin-like arabinogalactan protein 20 	NA	NA	Medtr1g137380.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215439.1.S1_at	A	A1TS	POPTR_0017s14000	POPTR_0017s14000 (11)	scaffold_17:14179097-14180133(+) (11)	NA	Q63186	Translation initiation factor eIF-2B subunit delta	AT5G38640.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g44310.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.215440.1.S1_at	A	A1TS	POPTR_0017s13980	POPTR_0017s13980 (11)	scaffold_17:14152162-14152341(+) (11)	NA	Q9SBV9	Transcription factor CYCLOIDEA (Fragment)	AT1G67260.1	TCP family transcription factor  	LOC_Os03g49880.1	"TCP family transcription factor, putative, expressed"	AC233675_3.1	TCP transcription factor AC233675.1 11574-12645 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215442.1.S1_at	A	A1TS	POPTR_0017s13960	POPTR_0017s13960 (10)	scaffold_17:14118238-14119989(-) (10)	NA	NA	NA	AT1G18700.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os07g43870.3	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.215443.1.S1_at	A	A1TS	POPTR_0017s13920	POPTR_0017s13920 (11)	scaffold_17:14099099-14102238(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g49930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215445.1.S1_at	A	A1TS	POPTR_0017s13870	POPTR_0017s13870 (11)	scaffold_17:14066526-14067600(-) (11)	NA	P54493	Rhomboid protease gluP	AT5G38510.2	Rhomboid-related intramembrane serine protease family protein 	LOC_Os02g22100.1	"OsRhmbd6 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.215446.1.S1_at	A	A1TS	POPTR_0017s13860	POPTR_0017s13860 (11)	scaffold_17:14063558-14064536(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215447.1.S1_at	A	A1TS	POPTR_0017s13850	POPTR_0017s13850 (11)	scaffold_17:14060757-14063367(+) (11)	NA	Q6PAV2	Probable E3 ubiquitin-protein ligase HERC4	AT5G16040.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os08g33390.1	"Regulator of chromosome condensation domain containing protein, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215448.1.S1_at	A	A1TS	POPTR_0017s13810	POPTR_0017s13810 (9)	scaffold_17:14039432-14039644(+) (9)//scaffold_571:12591-12805(-) (11)	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215449.1.S1_at	A	A1TS	POPTR_0005s15750	POPTR_0005s15750 (11)	scaffold_5:12350356-12350937(+) (11)	NA	Q54I39	IST1-like protein	AT1G13340.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os03g50210.1	"DUF292 domain containing protein, expressed"	Medtr1g140920.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215450.1.S1_at	A	A1TS	POPTR_0005s15720	POPTR_0005s15720 (11)	scaffold_5:12331738-12332181(-) (11)	NA	Q9FF17	"Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase"	AT5G38460.2	"ALG6, ALG8 glycosyltransferase family "	LOC_Os07g07010.1	"glucosyltransferase, putative, expressed"	Medtr5g085330.1	"ALG6, ALG8 glycosyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.215452.1.S1_at	A	A1TA	POPTR_0005s15700	POPTR_0005s15700 (11)	scaffold_5:12297017-12297605(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215453.1.S1_at	A	A1TS	POPTR_0005s15690	POPTR_0005s15690 (11)	scaffold_5:12294185-12294887(+) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os10g35220.1	"KH domain containing protein, putative, expressed"	Medtr6g013130.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.215454.1.S1_at	A	A1TS	POPTR_0005s15670	POPTR_0005s15670 (11)	scaffold_5:12285524-12285816(+) (11)	NA	Q9M886	LOB domain-containing protein 41	AT3G02550.1	LOB domain-containing protein 41 	LOC_Os01g32770.1	"DUF260 domain containing protein, putative, expressed"	Medtr6g020260.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215454.1.S1_s_at	A	A1TS	POPTR_0005s15670	POPTR_0005s15670 (11)	scaffold_5:12284872-12285525(+) (11)	NA	Q9M886	LOB domain-containing protein 41	AT3G02550.1	LOB domain-containing protein 41 	LOC_Os01g32770.1	"DUF260 domain containing protein, putative, expressed"	Medtr6g020260.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215455.1.S1_at	A	A1TS	POPTR_0005s15630	POPTR_0005s15630 (11)	scaffold_5:12234579-12236633(-) (11)	NA	NA	NA	AT1G67080.1	abscisic acid (aba)-deficient 4 	LOC_Os01g03750.1	expressed protein	Medtr6g017810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215456.1.S1_at	A	A1TS	POPTR_0005s15620	POPTR_0005s15620 (11)	scaffold_5:12234191-12234371(+) (11)	NA	Q6MAQ1	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215457.1.S1_at	A	A1TS	POPTR_0005s15600	POPTR_0005s15600 (9)	scaffold_5:12226351-12227692(+) (10)	NA	NA	NA	AT5G38380.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os07g18250.2	expressed protein	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.215458.1.S1_at	A	A1TS	POPTR_0005s15590	POPTR_0005s15590 (11)	scaffold_5:12216964-12218648(+) (11)	NA	A4D998	Transcription factor bHLH75	AT1G25330.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr6g028080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.215459.1.S1_at	A	A1TS	POPTR_0005s15560	POPTR_0005s15560 (11)	scaffold_5:12206524-12208020(+) (11)	POPTR_0004s09820 (6)	Q3SZI0	Mannose-6-phosphate isomerase	AT3G02570.1	"Mannose-6-phosphate isomerase, type I "	LOC_Os01g03710.1	"mannose-6-phosphate isomerase, putative, expressed"	AC233656_29.1	"Mannose-6-phosphate isomerase, type I AC233656.1 117027-112130 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	GO:0004476|mannose-6-phosphate isomerase activity||GO:0008270|zinc ion binding	NA
PtpAffx.21546.1.S1_at	A	A1TS	POPTR_0001s47280	POPTR_0001s47280 (11)	scaffold_1:47534053-47534451(+) (11)	NA	O65351	Subtilisin-like protease	AT5G59810.1	Subtilase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.215461.1.S1_at	A	A1TS	POPTR_0005s15540	POPTR_0005s15540 (11)	scaffold_5:12186417-12186929(-) (11)	NA	NA	NA	AT1G67050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). 	NA	NA	Medtr7g093370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215462.1.S1_at	A	A1MS	POPTR_0005s15530	POPTR_0005s15530 (11)	scaffold_5:12182489-12183606(-) (11)	NA	NA	NA	AT1G67050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215463.1.S1_at	A	A1TS	POPTR_0005s15500	POPTR_0005s15500 (11)	scaffold_5:12148040-12149003(-) (11)	NA	NA	NA	AT1G67040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g19080.2	expressed protein	Medtr7g093380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215464.1.S1_at	A	A1TS	POPTR_0005s15490	POPTR_0005s15490 (11)	scaffold_5:12145320-12145812(-) (11)	NA	NA	NA	AT1G67040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04160.1	expressed protein	Medtr7g093380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215465.1.S1_s_at	A	A1TS	POPTR_0005s15480	POPTR_0005s15480 (11)	scaffold_5:12143650-12144105(+) (11)	NA	NA	NA	AT5G38300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67035.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g093390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215466.1.S1_at	A	A1TS	POPTR_0005s15470	POPTR_0005s15470 (11)	scaffold_5:12138437-12139016(+) (11)	NA	NA	NA	AT2G27770.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr7g126660.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215467.1.S1_at	A	A1TS	POPTR_0005s15420	POPTR_0005s15420 (11)	scaffold_5:12099173-12100602(-) (11)	NA	Q9LF10	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT5G16180.1	ortholog of maize chloroplast splicing factor CRS1 	LOC_Os08g27150.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr2g121940.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.215468.1.S1_at	A	A1TS	POPTR_0016s14440	POPTR_0016s14440 (11)	scaffold_16:13648308-13648415(+) (11)	POPTR_0016s14460 (8)	P24465	Cytochrome P450 71A1	AT3G48320.1	"cytochrome P450, family 71, subfamily A, polypeptide 21 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.215475.1.S1_at	A	A2MS	POPTR_0001s27270	POPTR_0001s27290 (10)//POPTR_0001s27270 (10)	scaffold_1:26170186-26170246(+) (10)//scaffold_1:26185193-26185253(+) (10)	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215475.1.S1_x_at	A	A2MS	POPTR_0001s27270	POPTR_0001s27290 (10)//POPTR_0001s27270 (10)	scaffold_1:26169893-26170246(+) (10)//scaffold_1:26184900-26185253(+) (10)	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215477.1.S1_s_at	A	A1TS	POPTR_0011s02080	POPTR_0011s02080 (11)	scaffold_11:1736491-1744034(-) (11)	POPTR_0011s03660 (8)	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.215479.1.S1_at	A	A1TS	POPTR_0002s21570	POPTR_0002s21570 (11)	scaffold_2:18101394-18101696(-) (11)	NA	NA	NA	AT4G22140.1	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os09g21770.1	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.215479.1.S1_x_at	A	A1TS	POPTR_0002s21570	POPTR_0002s21570 (11)	scaffold_2:18101394-18101859(-) (11)	NA	NA	NA	AT4G22140.1	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os09g21770.1	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.215481.1.S1_x_at	A	A4TS	POPTR_0001s42470	POPTR_0001s42470 (11)//POPTR_0001s47820 (11)//POPTR_0049s00260 (11)//POPTR_0001s42520 (11)	scaffold_1:42445924-42446364(+) (11)//scaffold_1:42501082-42501522(+) (11)//scaffold_1:48183491-48183934(+) (11)//scaffold_49:167058-167498(+) (11)	POPTR_0001s42395 (6)//POPTR_0001s42410 (6)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215482.1.S1_at	A	A1TS	POPTR_0011s04840	POPTR_0011s04840 (10)	scaffold_11:4821502-4821751(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215483.1.S1_at	A	A2TS	POPTR_0011s04820	POPTR_0011s04820 (11)//POPTR_0412s00200 (10)	scaffold_11:4803775-4804299(+) (11)//scaffold_412:1414-1938(-) (11)	NA	Q9FZ80	Sulfotransferase 17	AT1G18590.1	sulfotransferase 17 	LOC_Os06g42120.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.215485.1.S1_at	A	A1TS	POPTR_0011s04900	POPTR_0011s04900 (11)	scaffold_11:4853299-4855040(-) (11)	NA	NA	NA	AT1G11060.1	WAPL (Wings apart-like protein regulation of heterochromatin) protein 	LOC_Os10g35380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215485.1.S1_x_at	A	A1TS	POPTR_0011s04900	POPTR_0011s04900 (11)	scaffold_11:4853299-4855040(-) (11)	NA	NA	NA	AT1G11060.1	WAPL (Wings apart-like protein regulation of heterochromatin) protein 	LOC_Os10g35380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215486.1.S1_at	A	A1TS	POPTR_0011s04910	POPTR_0011s04910 (11)	scaffold_11:4866626-4867674(+) (11)	NA	Q5YDB6	RNA polymerase II C-terminal domain phosphatase-like 1	AT4G21670.1	C-terminal domain phosphatase-like 1 	LOC_Os02g42600.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g024780.1	NLI interacting factor 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.215487.1.S1_at	A	A1MS	POPTR_0011s04910	POPTR_0011s04910 (10)	scaffold_11:4871899-4872776(+) (11)	NA	Q5YDB6	RNA polymerase II C-terminal domain phosphatase-like 1	AT4G21670.1	C-terminal domain phosphatase-like 1 	LOC_Os02g42600.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g024780.1	NLI interacting factor 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.215488.1.S1_at	A	A1TS	POPTR_0011s04940	POPTR_0011s04940 (11)	scaffold_11:4904838-4905854(+) (11)	NA	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215489.1.S1_at	A	A1MS	POPTR_0011s04940	POPTR_0011s04940 (10)	scaffold_11:4907473-4908215(+) (10)	NA	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215490.1.S1_at	A	A1MS	POPTR_0011s04950	POPTR_0011s04950 (11)	scaffold_11:4911145-4913440(+) (11)	NA	Q95QQ2	UPF0533 protein C56C10.7	AT2G47960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378); Has 285 Blast hits to 284 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 68; Plants - 32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). 	LOC_Os10g35570.1	expressed protein	AC233659_17.1	"UPF0533 protein, related AC233659.1 71731-77893 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215491.1.S1_at	A	A1TS	POPTR_0011s05020	POPTR_0011s05020 (11)	scaffold_11:4976070-4977070(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g51500.1	expressed protein	Medtr8g119530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215492.1.S1_at	A	A2TS	POPTR_0011s05030	POPTR_0011s05030 (11)//POPTR_0004s04140 (10)	scaffold_11:4988385-4989214(+) (11)//scaffold_4:2976971-2978042(+) (9)	NA	NA	NA	AT3G47160.1	RING/U-box superfamily protein 	LOC_Os07g46700.3	"zinc finger, RING-type, putative, expressed"	AC233659_30.2	"Zinc finger, RING-type AC233659.1 131567-127095 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215492.1.S1_s_at	A	A1TS	POPTR_0011s05030	POPTR_0011s05030 (11)	scaffold_11:4989210-4989394(+) (11)	NA	NA	NA	AT3G47160.1	RING/U-box superfamily protein 	LOC_Os07g46700.3	"zinc finger, RING-type, putative, expressed"	AC233659_30.2	"Zinc finger, RING-type AC233659.1 131567-127095 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215492.1.S1_x_at	A	A1TS	POPTR_0011s05030	POPTR_0011s05030 (11)	scaffold_11:4988000-4989365(+) (11)	NA	NA	NA	AT3G47160.1	RING/U-box superfamily protein 	LOC_Os07g46700.3	"zinc finger, RING-type, putative, expressed"	AC233659_30.2	"Zinc finger, RING-type AC233659.1 131567-127095 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215493.1.S1_at	A	A1TS	POPTR_0011s05040	POPTR_0011s05040 (11)	scaffold_11:4998755-4998945(+) (11)	NA	Q3ZBY7	Sphingolipid delta(4)-desaturase DES1	AT4G04930.1	fatty acid desaturase family protein 	LOC_Os02g42660.1	"sphingolipid delta desaturase, putative, expressed"	Medtr2g014760.1	Fatty acid desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	GO:0016021|integral to membrane
PtpAffx.215493.1.S1_s_at	A	A1TS	POPTR_0011s05040	POPTR_0011s05040 (11)	scaffold_11:4998635-4999003(+) (11)	NA	Q3ZBY7	Sphingolipid delta(4)-desaturase DES1	AT4G04930.1	fatty acid desaturase family protein 	LOC_Os02g42660.1	"sphingolipid delta desaturase, putative, expressed"	Medtr2g014760.1	Fatty acid desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	GO:0016021|integral to membrane
PtpAffx.215494.1.S1_at	A	A1TS	POPTR_0011s05070	POPTR_0011s05070 (11)	scaffold_11:5005793-5006225(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215495.1.S1_at	A	A1TS	POPTR_0011s05080	POPTR_0011s05080 (11)	scaffold_11:5008162-5009136(+) (11)	NA	NA	NA	AT1G65070.2	"DNA mismatch repair protein MutS, type 2 "	LOC_Os04g58410.1	"smr domain containing protein, expressed"	AC233659_24.1	MutS 2 protein AC233659.1 104034-100163 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215496.1.S1_at	A	A1TS	POPTR_0011s05090	POPTR_0011s05090 (11)	scaffold_11:5009885-5010332(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g58410.1	"smr domain containing protein, expressed"	AC233659_24.1	MutS 2 protein AC233659.1 104034-100163 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215497.1.S1_at	A	A1TS	POPTR_0011s05100	POPTR_0011s05100 (11)	scaffold_11:5019801-5022307(+) (11)	NA	NA	NA	AT3G15390.1	silencing defective 5 	LOC_Os02g42670.1	"DUF1771 domain containing protein, putative, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215497.1.S1_s_at	A	A1TS	POPTR_0011s05100	POPTR_0011s05100 (11)	scaffold_11:5019771-5021819(+) (11)	NA	NA	NA	AT3G15390.1	silencing defective 5 	LOC_Os02g42670.1	"DUF1771 domain containing protein, putative, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215498.1.S1_at	A	A1TS	POPTR_0011s05130	POPTR_0011s05130 (10)	scaffold_11:5033095-5034436(-) (10)	NA	Q6VBB2	Heat stress transcription factor A-2b	AT5G16820.2	heat shock factor 3 	LOC_Os07g08140.1	"heat stress transcription factor, putative, expressed"	AC233659_20.1	"Heat shock factor (HSF)-type, DNA-binding AC233659.1 90576-91538 H EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.215499.1.S1_at	A	A1TS	POPTR_0011s05140	POPTR_0011s05140 (11)	scaffold_11:5042058-5042183(+) (11)	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215499.1.S1_s_at	A	A1TS	POPTR_0011s05140	POPTR_0011s05140 (11)	scaffold_11:5041623-5042050(+) (11)	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215501.1.S1_at	A	A1TS	POPTR_0011s05160	POPTR_0011s05160 (11)	scaffold_11:5059995-5062139(+) (11)	NA	NA	NA	AT2G33793.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g62160.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215502.1.S1_at	A	A1TS	POPTR_0011s05170	POPTR_0011s05170 (11)	scaffold_11:5067349-5067803(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT3G57880.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr7g111440.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215503.1.S1_at	A	A1TS	POPTR_0011s05180	POPTR_0011s05180 (11)	scaffold_11:5071403-5072024(+) (11)	NA	B9RZ92	UPF0497 membrane protein 1	AT1G03700.1	Uncharacterised protein family (UPF0497) 	LOC_Os05g15630.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g094340.2	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215504.1.S1_at	A	A1TS	POPTR_0011s05190	POPTR_0011s05190 (11)	scaffold_11:5078762-5079928(+) (11)	NA	NA	NA	AT5G22620.2	phosphoglycerate/bisphosphoglycerate mutase family protein 	LOC_Os01g13570.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g073280.1	Phosphoglycerate/bisphosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215505.1.S1_at	A	A1TS	POPTR_0011s05200	POPTR_0011s05200 (11)	scaffold_11:5086536-5086737(+) (11)	NA	P93011	Pentatricopeptide repeat-containing protein At2g33760	AT2G33760.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g08140.1	"pentatricopeptide, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215506.1.S1_at	A	A1TS	POPTR_0011s05260	POPTR_0011s05260 (11)	scaffold_11:5149165-5149396(+) (11)	NA	Q9M0Y8	Vesicle-fusing ATPase	AT4G04910.1	AAA-type ATPase family protein 	LOC_Os05g44310.1	"vesicle-fusing ATPase, putative, expressed"	AC233659_3.1	AAA ATPase AC233659.1 11110-14927 E EGN_Mt090430 200	NA	GO:0005524|ATP binding	NA
PtpAffx.215507.1.S1_at	A	A1TS	POPTR_0011s05280	POPTR_0011s05280 (11)	scaffold_11:5154424-5154658(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215508.1.S1_s_at	A	A2TS	POPTR_0011s05290	POPTR_0011s05290 (11)//POPTR_0011s05300 (11)	scaffold_11:5170812-5171412(+) (11)//scaffold_11:5179473-5180064(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT4G04960.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr2g017340.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215509.1.S1_at	A	A1TS	POPTR_0011s05320	POPTR_0011s05320 (11)	scaffold_11:5232617-5233006(+) (11)	NA	Q9FLI1	Transcription factor bHLH36	AT4G20970.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01870.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g017430.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.215510.1.S1_at	A	A1TS	POPTR_0011s05350	POPTR_0011s05350 (11)	scaffold_11:5279516-5280036(+) (11)	NA	NA	NA	AT1G28280.2	VQ motif-containing protein 	LOC_Os01g54400.1	"VQ domain containing protein, putative, expressed"	Medtr2g017460.1	DNA-binding WRKY; VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215511.1.S1_at	A	A1TS	POPTR_0011s05360	POPTR_0011s05360 (11)	scaffold_11:5297939-5298506(+) (11)	NA	Q86US8	Telomerase-binding protein EST1A	AT1G28260.2	Telomerase activating protein Est1 	LOC_Os08g21350.3	"cig3, putative, expressed"	Medtr2g017490.1	"cig3, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215512.1.S1_at	A	A1TS	POPTR_0011s05380	POPTR_0011s05380 (11)	scaffold_11:5308164-5308530(-) (11)	NA	Q1PFR7	B3 domain-containing transcription factor LEC2	AT1G28300.1	AP2/B3-like transcriptional factor family protein 	LOC_Os04g58010.1	B3 DNA binding domain containing protein	Medtr7g096720.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.215512.1.S1_x_at	A	A1TS	POPTR_0011s05380	POPTR_0011s05380 (11)	scaffold_11:5308140-5308921(-) (11)	NA	Q1PFR7	B3 domain-containing transcription factor LEC2	AT1G28300.1	AP2/B3-like transcriptional factor family protein 	LOC_Os04g58010.1	B3 DNA binding domain containing protein	Medtr7g096720.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.215513.1.S1_at	A	A1TS	POPTR_0011s05410	POPTR_0011s05410 (11)	scaffold_11:5328128-5328250(+) (11)	NA	Q8LDR0	Dof zinc finger protein DOF5.4	AT5G60850.1	OBF binding protein 4 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g017570.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.215513.1.S1_x_at	A	A1TS	POPTR_0011s05410	POPTR_0011s05410 (11)	scaffold_11:5328128-5328322(+) (11)	NA	Q8LDR0	Dof zinc finger protein DOF5.4	AT5G60850.1	OBF binding protein 4 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g017570.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.215514.1.S1_at	A	A1MS	POPTR_0011s05420	POPTR_0011s05420 (11)	scaffold_11:5352180-5352658(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.215515.1.S1_at	A	A1MS	POPTR_0011s05440	POPTR_0011s05440 (10)	scaffold_11:5373099-5373823(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215516.1.S1_at	A	A1TS	POPTR_0011s05450	POPTR_0011s05450 (11)	scaffold_11:5400268-5400419(-) (11)	NA	Q9FZA4	Dof zinc finger protein DOF1.4	AT1G28310.2	Dof-type zinc finger DNA-binding family protein 	LOC_Os07g32510.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g017650.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.215517.1.S1_at	A	A1TS	POPTR_0011s05460	POPTR_0011s05460 (10)	scaffold_11:5408880-5409194(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215519.1.S1_at	A	A1TS	POPTR_0011s05500	POPTR_0011s05500 (11)	scaffold_11:5456050-5456932(-) (11)	NA	Q54FE6	Mitochondrial substrate carrier family protein S	AT2G33820.1	Mitochondrial substrate carrier family protein 	LOC_Os11g23170.3	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215520.1.S1_at	A	A1TS	POPTR_0011s05510	POPTR_0011s05510 (11)	scaffold_11:5469254-5471269(-) (11)	NA	Q2T9J0	Peroxisomal leader peptide-processing protease	AT1G28320.1	protease-related 	LOC_Os05g41810.1	"OsDegp8 - Putative Deg protease homologue, expressed"	Medtr2g017690.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215521.1.S1_at	A	A1TS	POPTR_0011s05540	POPTR_0011s05540 (11)	scaffold_11:5493504-5493969(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215522.1.S1_at	A	A1TS	POPTR_0011s05550	POPTR_0011s05550 (11)	scaffold_11:5496569-5497238(-) (11)	NA	Q84VG7	Zinc finger CCCH domain-containing protein 27	AT2G33835.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os03g11580.1	expressed protein	Medtr2g017760.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.215524.1.S1_at	A	A1TS	POPTR_0011s05560	POPTR_0011s05560 (9)	scaffold_11:5523611-5524113(+) (9)	NA	C0LGD9	Probable LRR receptor-like serine/threonine-protein kinase At1g07560	AT1G28340.1	receptor like protein 4 	LOC_Os07g31840.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g017800.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.215527.1.S1_at	A	A2TS	POPTR_0584s00210	POPTR_0584s00210 (11)//POPTR_0011s05650 (10)	scaffold_11:5626515-5627337(+) (10)//scaffold_584:1141-1984(-) (11)	NA	Q80Y75	DnaJ homolog subfamily B member 13	AT2G20560.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	Medtr4g108870.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.215528.1.S1_at	A	A1TS	POPTR_0011s05660	POPTR_0011s05660 (11)	scaffold_11:5629408-5630722(-) (11)	NA	NA	NA	AT1G28420.1	homeobox-1 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr2g018010.1	DDT; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.215528.1.S1_s_at	A	A1TS	POPTR_0011s05660	POPTR_0011s05660 (11)	scaffold_11:5629510-5630528(-) (11)	NA	NA	NA	AT1G28420.1	homeobox-1 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr2g018010.1	DDT; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.215529.1.S1_at	A	A1TS	POPTR_0011s05690	POPTR_0011s05690 (11)	scaffold_11:5652757-5654294(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215530.1.S1_at	A	A1TS	POPTR_0011s05700	POPTR_0011s05700 (11)	scaffold_11:5661242-5661736(-) (11)	NA	NA	NA	AT4G18425.1	Protein of unknown function (DUF679) 	LOC_Os05g48840.1	expressed protein	Medtr2g018110.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215532.1.S1_at	A	A2TS	POPTR_0011s05720	POPTR_1147s00010 (11)//POPTR_0011s05720 (11)	scaffold_11:5697954-5699368(-) (11)//scaffold_1147:2188-6372(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215533.1.S1_at	A	A1TS	POPTR_0011s05730	POPTR_0011s05730 (11)	scaffold_11:5705847-5706347(+) (11)	NA	Q8LPB4	Phytosulfokine receptor 1	AT5G46080.1	Protein kinase superfamily protein 	LOC_Os02g05940.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr2g018170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215534.1.S1_at	A	A1TS	POPTR_0011s05750	POPTR_0011s05750 (11)	scaffold_11:5743940-5744023(-) (11)	NA	P32456	Interferon-induced guanylate-binding protein 2	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	GO:0006955|immune response	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.215534.1.S1_s_at	A	A1TS	POPTR_0011s05750	POPTR_0011s05750 (11)	scaffold_11:5743778-5743874(-) (11)	NA	P32456	Interferon-induced guanylate-binding protein 2	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	GO:0006955|immune response	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.215535.1.S1_s_at	A	A1TS	POPTR_0011s01090	POPTR_0011s01090 (11)	scaffold_11:601458-601802(+) (11)	NA	NA	NA	AT3G54070.1	Ankyrin repeat family protein 	NA	NA	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215542.1.S1_x_at	A	A1TS	POPTR_0004s09960	POPTR_0004s09960 (11)	scaffold_4:8511160-8511309(-) (11)	NA	Q9FF17	"Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase"	AT5G38460.2	"ALG6, ALG8 glycosyltransferase family "	LOC_Os07g07010.1	"glucosyltransferase, putative, expressed"	Medtr5g085330.1	"ALG6, ALG8 glycosyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.215546.1.S1_at	A	A1MS	POPTR_0015s12200	POPTR_0015s12200 (11)	scaffold_15:12566195-12566450(-) (11)	NA	B0JQV0	Putative pterin-4-alpha-carbinolamine dehydratase	AT5G51110.1	Transcriptional coactivator/pterin dehydratase 	LOC_Os01g47420.1	"pterin-4-alpha-carbinolamine dehydratase, putative, expressed"	Medtr5g019890.1	Transcriptional coactivator/pterin dehydratase 	GO:0006729|tetrahydrobiopterin biosynthetic process	GO:0008124|4-alpha-hydroxytetrahydrobiopterin dehydratase activity	NA
PtpAffx.215555.1.S1_at	A	A1TS	POPTR_0004s15910	POPTR_0004s15910 (11)	scaffold_4:16414545-16415229(+) (11)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215559.1.S1_at	A	A1TS	POPTR_0019s09750	POPTR_0019s09750 (9)	scaffold_19:11353111-11353826(+) (11)	NA	Q6YM50	"Mannan endo-1,4-beta-mannosidase 5"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.2	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr4g118250.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215562.1.S1_x_at	A	A1TS	POPTR_0019s09670	POPTR_0019s09670 (11)	scaffold_19:11271130-11271467(-) (11)	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.215563.1.S1_at	A	A1TS	POPTR_0019s09660	POPTR_0019s09660 (11)	scaffold_19:11268899-11269491(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215564.1.S1_at	A	A1TS	POPTR_0019s09560	POPTR_0019s09560 (9)	scaffold_19:11163747-11164172(+) (9)	NA	NA	NA	AT1G71350.1	eukaryotic translation initiation factor SUI1 family protein 	LOC_Os02g35160.1	"ligatin, putative, expressed"	Medtr4g031820.1	Translation initiation factor SUI1; PUA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215565.1.S1_at	A	A1TS	POPTR_0019s09550	POPTR_0019s09550 (11)	scaffold_19:11159765-11160581(+) (11)	NA	Q9FVV1	GDSL esterase/lipase At1g71250	AT1G71250.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os05g34700.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g041380.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.215566.1.S1_s_at	A	A2TS	POPTR_0019s09530	POPTR_0019s09530 (11)//POPTR_0409s00200 (11)	scaffold_19:11118803-11118994(-) (11)//scaffold_409:7371-7562(+) (11)	NA	Q39127	Ethylene-responsive transcription factor TINY	AT5G25810.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g46400.1	"AP2 domain containing protein, expressed"	Medtr4g041370.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.215567.1.S1_at	A	A1TS	POPTR_0519s00210	POPTR_0519s00210 (11)	scaffold_519:8172-8341(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215568.1.S1_at	A	A1TS	POPTR_0019s09430	POPTR_0019s09430 (11)	scaffold_1543:4081-4762(+) (10)//scaffold_19:10972323-10973004(-) (11)	NA	NA	NA	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein 	NA	NA	Medtr4g041260.1	"Protein of unknown function UPF0054; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215569.1.S1_at	A	A1MS	POPTR_0019s09420	POPTR_0019s09420 (10)	scaffold_19:10968783-10971082(+) (10)	NA	O74396	Vacuolar protein sorting-associated protein 9a	AT3G19770.1	Vacuolar sorting protein 9 (VPS9) domain 	LOC_Os03g15650.1	"vacuolar sorting protein, putative, expressed"	Medtr3g010530.1	Vacuolar sorting protein 9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215570.1.S1_at	A	A1TS	POPTR_0019s09410	POPTR_0019s09410 (11)	scaffold_19:10964496-10964927(+) (11)	NA	P37707	B2 protein	AT3G27090.1	DCD (Development and Cell Death) domain protein 	LOC_Os05g41930.3	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215571.1.S1_at	A	A1TS	POPTR_0019s09400	POPTR_0019s09400 (11)	scaffold_19:10949977-10950390(-) (11)	NA	Q9SV87	Protein BEARSKIN1	AT4G10350.1	NAC domain containing protein 70 	LOC_Os02g15340.1	"no apical meristem protein, putative, expressed"	Medtr4g041220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.215572.1.S1_at	A	A1MS	POPTR_0019s09390	POPTR_0019s09390 (11)	scaffold_19:10936570-10936619(-) (11)	NA	NA	NA	AT1G17680.2	tetratricopeptide repeat (TPR)-containing protein 	NA	NA	Medtr4g109240.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215573.1.S1_at	A	A1TS	POPTR_0019s09380	POPTR_0019s09380 (11)	scaffold_19:10935421-10935742(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g065470.1	"KID-containing protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215574.1.S1_at	A	A1TS	POPTR_0019s09360	POPTR_0019s09360 (11)	scaffold_19:10924172-10924903(-) (11)	NA	NA	NA	AT3G10840.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g02589.3	"hydrolase, alpha/beta fold family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215575.1.S1_at	A	A1TS	POPTR_0019s09350	POPTR_0019s09350 (11)	scaffold_19:10922966-10923490(+) (11)	NA	NA	NA	AT2G40815.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	NA	NA	Medtr5g077910.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215576.1.S1_at	A	A1TS	POPTR_0019s09340	POPTR_0019s09340 (11)	scaffold_19:10920187-10921940(+) (11)	NA	Q5KQI6	Probable acetyltransferase NSI	AT4G19985.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os05g44020.4	"acetyltransferase, GNAT family, putative, expressed"	Medtr3g121800.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.215577.1.S1_at	A	A1TS	POPTR_0019s09330	POPTR_0019s09330 (11)	scaffold_19:10912202-10914145(-) (11)	NA	Q84TG1	DEAD-box ATP-dependent RNA helicase 57	AT3G09720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g45360.1	"DEAD/DEAH box helicase domain containing protein, expressed"	Medtr7g121020.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.215579.1.S1_at	A	A1TS	POPTR_0019s09260	POPTR_0019s09260 (11)	scaffold_19:10835442-10835638(+) (11)	NA	Q05047	Secologanin synthase	AT5G24910.1	"cytochrome P450, family 714, subfamily A, polypeptide 1 "	LOC_Os12g02640.1	"cytochrome P450 72A1, putative, expressed"	Medtr3g121810.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.215579.1.S1_s_at	A	A1TS	POPTR_0019s09260	POPTR_0019s09260 (11)	scaffold_19:10835327-10835958(+) (11)	NA	Q05047	Secologanin synthase	AT5G24910.1	"cytochrome P450, family 714, subfamily A, polypeptide 1 "	LOC_Os12g02640.1	"cytochrome P450 72A1, putative, expressed"	Medtr3g121810.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.215580.1.S1_at	A	A1TS	POPTR_0019s09250	POPTR_0019s09250 (11)	scaffold_19:10810398-10811011(-) (11)	NA	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215581.1.S1_at	A	A1TS	POPTR_0019s09240	POPTR_0019s09240 (10)	scaffold_19:10804390-10805949(-) (11)	NA	NA	NA	AT3G14172.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g21270.1	expressed protein	Medtr3g121880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215582.1.S1_at	A	A1MS	POPTR_0019s09240	POPTR_0019s09240 (9)	scaffold_19:10800665-10801034(-) (9)	NA	NA	NA	AT3G14172.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g21270.1	expressed protein	Medtr3g121880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215583.1.S1_at	A	A1TS	POPTR_0019s09230	POPTR_0019s09230 (11)	scaffold_19:10792462-10792741(-) (11)	NA	O05235	Uncharacterized hydrolase yugF	AT5G38520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g34630.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g035000.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215584.1.S1_at	A	A1TS	POPTR_0019s09220	POPTR_0019s09220 (11)	scaffold_19:10786479-10787629(-) (11)	NA	Q89AC4	Peptide chain release factor 2	AT1G33330.1	Class I peptide chain release factor 	LOC_Os01g66379.1	expressed protein	Medtr6g070820.1	Class I peptide chain release factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	GO:0003747|translation release factor activity	NA
PtpAffx.215585.1.S1_at	A	A1TS	POPTR_0019s09200	POPTR_0019s09200 (11)	scaffold_19:10770521-10772050(+) (11)	NA	O82616	Putative fructokinase-5	AT4G10260.1	pfkB-like carbohydrate kinase family protein 	LOC_Os08g02120.1	"kinase, pfkB family, putative, expressed"	Medtr7g034930.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215586.1.S1_at	A	A1TS	POPTR_0019s09180	POPTR_0019s09180 (11)	scaffold_19:10724118-10724541(+) (11)	NA	P30986	Reticuline oxidase	AT5G44400.1	FAD-binding Berberine family protein 	LOC_Os08g06190.1	"berberine and berberine like domain containing protein, expressed"	Medtr7g034840.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.215587.1.S1_at	A	A1TS	POPTR_0019s09130	POPTR_0019s09130 (11)	scaffold_19:10690554-10691095(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g065520.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.215588.1.S1_at	A	A1TS	POPTR_0019s09120	POPTR_0019s09120 (11)	scaffold_19:10683928-10684461(-) (11)	NA	Q9C6J3	Putative F-box protein At1g50870	AT1G50870.1	F-box and associated interaction domains-containing protein 	LOC_Os02g35560.1	"OsFBX53 - F-box domain containing protein, expressed"	Medtr3g040820.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215589.1.S1_at	A	A1TS	POPTR_0019s09110	POPTR_0019s09110 (11)	scaffold_19:10680082-10683300(+) (11)	NA	Q68F45	WD repeat domain phosphoinositide-interacting protein 3	AT2G40810.2	homolog of yeast autophagy 18C 	LOC_Os01g07400.2	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215590.1.S1_at	A	A1MS	POPTR_0019s09050	POPTR_0019s09050 (10)	scaffold_19:10627559-10628648(+) (10)	NA	NA	NA	AT3G20260.1	Protein of unknown function (DUF1666) 	LOC_Os08g40820.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215591.1.S1_at	A	A1TS	POPTR_0019s09000	POPTR_0019s09000 (11)	scaffold_19:10600397-10601275(-) (11)	NA	P85801	Thioredoxin H-type	AT3G08710.2	thioredoxin H-type 9 	LOC_Os01g07376.1	"thioredoxin, putative, expressed"	Medtr8g116230.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.215592.1.S1_at	A	A1TS	POPTR_0019s08990	POPTR_0019s08990 (11)	scaffold_19:10596087-10596518(-) (11)	NA	O48639	Probable inorganic phosphate transporter 1-3	AT5G43360.1	phosphate transporter 1;3 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr5g076920.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.215594.1.S1_at	A	A1TS	POPTR_0019s08970	POPTR_0019s08970 (11)	scaffold_19:10556113-10556533(+) (11)	NA	NA	NA	AT5G58320.2	Kinase interacting (KIP1-like) family protein 	LOC_Os05g07680.2	"KIP1, putative, expressed"	Medtr5g083340.1	Prefoldin; KIP1-like 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.215595.1.S1_at	A	A1TS	POPTR_0019s08960	POPTR_0019s08960 (9)	scaffold_19:10524159-10524686(-) (11)	NA	Q9FHK4	Uncharacterized protein At5g05190	AT5G05190.1	Protein of unknown function (DUF3133) 	LOC_Os02g26560.1	expressed protein	Medtr5g076870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215596.1.S1_at	A	A1TS	POPTR_0019s08940	POPTR_0019s08940 (11)	scaffold_19:10505914-10506542(+) (11)	NA	Q3THJ3	Probable RNA-binding protein EIF1AD	AT2G40780.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os03g02310.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.215597.1.S1_at	A	A1TS	POPTR_0019s08910	POPTR_0019s08910 (10)	scaffold_19:10483015-10484370(-) (11)	NA	Q149N8	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076800.1	"SNF2-related; Zinc finger, RING-type; Claudin tight junction protein; Zinc finger, FYVE/PHD-type; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.215599.1.S1_at	A	A1TS	POPTR_0019s08910	POPTR_0019s08910 (11)	scaffold_19:10480158-10480998(-) (11)	NA	Q149N8	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076800.1	"SNF2-related; Zinc finger, RING-type; Claudin tight junction protein; Zinc finger, FYVE/PHD-type; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.215599.1.S1_s_at	A	A5TS	POPTR_0019s08790	POPTR_0019s08910 (11)//POPTR_0019s08790 (11)//POPTR_0019s08840 (11)//POPTR_0019s08820 (11)//POPTR_1470s00200 (11)	scaffold_1470:4316-4499(-) (11)//scaffold_19:10344235-10344418(-) (11)//scaffold_19:10366490-10366673(-) (11)//scaffold_19:10384352-10384535(-) (11)//scaffold_19:10479964-10480147(-) (11)	NA	Q149N8	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076790.1	"Helicase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215600.1.S1_at	A	A1TS	POPTR_0019s08880	POPTR_0019s08880 (11)	scaffold_19:10447557-10447661(-) (11)	NA	NA	NA	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	NA	NA	Medtr5g076800.1	"SNF2-related; Zinc finger, RING-type; Claudin tight junction protein; Zinc finger, FYVE/PHD-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215600.1.S1_x_at	A	A1TS	POPTR_0019s08880	POPTR_0019s08880 (11)	scaffold_19:10447557-10448009(-) (11)	NA	NA	NA	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	NA	NA	Medtr5g076800.1	"SNF2-related; Zinc finger, RING-type; Claudin tight junction protein; Zinc finger, FYVE/PHD-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215601.1.S1_s_at	A	A1TS	POPTR_0009s09080	POPTR_0009s09080 (11)	scaffold_9:8151584-8151757(-) (11)	NA	Q0H904	"Endo-1,4-beta-xylanase C"	AT4G33860.1	Glycosyl hydrolase family 10 protein 	LOC_Os03g10478.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr7g025710.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.215605.1.S1_s_at	A	A1TS	POPTR_2033s00200	POPTR_2033s00200 (11)	scaffold_2033:1463-1681(-) (11)	NA	Q6DBM8	Metal tolerance protein B	AT2G29410.1	metal tolerance protein B1 	LOC_Os05g03780.1	"cation efflux family protein, putative, expressed"	Medtr2g041270.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.215609.1.S1_s_at	A	A1TS	POPTR_0001s15870	POPTR_0001s15870 (11)	scaffold_1:12715076-12715444(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT4G16563.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g45270.1	"aspartyl protease family protein, putative, expressed"	Medtr8g105840.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215610.1.S1_at	A	A1MS	POPTR_0001s15880	POPTR_0001s15880 (11)	scaffold_1:12723301-12723943(+) (11)	NA	Q10137	Sec14 cytosolic factor	AT5G47510.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os07g27310.1	"CRAL/TRIO domain containing protein, expressed"	Medtr5g012540.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215614.1.S1_s_at	A	A1TS	POPTR_0008s13760	POPTR_0008s13760 (11)	scaffold_8:9067240-9067540(-) (11)	NA	Q95204	Cytochrome b561	AT1G14730.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os10g02920.1	"cytochrome b561, putative, expressed"	AC235674_2.2	Cytochrome b561 / ferric reductase transmembrane AC235674.1 14925-10160 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.215618.1.S1_s_at	A	A1TS	POPTR_0475s00220	POPTR_0475s00220 (11)	scaffold_475:15365-15782(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074430.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.215619.1.S1_s_at	A	A3TS	POPTR_0008s02330	POPTR_1332s00200 (11)//POPTR_0008s02340 (11)//POPTR_0008s02330 (11)	scaffold_1332:3594-3641(+) (11)//scaffold_8:1113995-1114042(-) (11)//scaffold_8:1117040-1117087(+) (11)	NA	Q02200	Lignin-forming anionic peroxidase	AT1G14550.1	Peroxidase superfamily protein 	LOC_Os03g32050.1	"peroxidase precursor, putative, expressed"	Medtr4g114950.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.215620.1.S1_s_at	A	A1TS	POPTR_0018s04260	POPTR_0018s04260 (11)	scaffold_18:3602807-3602975(+) (11)	NA	Q9S9M2	Wall-associated receptor kinase-like 4	AT1G16150.1	wall associated kinase-like 4 	LOC_Os10g10130.3	"OsWAK112d - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215625.1.S1_at	A	A1TS	POPTR_0019s03020	POPTR_0019s03020 (11)	scaffold_19:3000917-3001369(+) (11)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g41370.1	Leucine Rich Repeat family protein	Medtr8g087940.1	TIR; NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.215631.1.S1_s_at	A	A1TS	POPTR_0014s04290	POPTR_0014s04290 (11)	scaffold_14:3356695-3357162(+) (11)	NA	O64792	Phosphatidylinositol N-acetylglucosaminyltransferase subunit P	AT2G39445.1	"Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit "	LOC_Os03g43900.1	"phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215639.1.S1_at	A	A1TS	POPTR_0049s00230	POPTR_0049s00230 (11)	scaffold_49:92722-92901(+) (11)	POPTR_0001s43690 (6)	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215639.1.S1_x_at	A	A1TS	POPTR_0049s00230	POPTR_0049s00230 (11)	scaffold_49:92722-93103(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215643.1.S1_s_at	A	A2TS	POPTR_0019s09800	POPTR_0019s09870 (11)//POPTR_0019s09800 (11)	scaffold_19:11406495-11406693(+) (11)//scaffold_19:11488524-11488729(+) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215648.1.S1_at	A	A1TS	POPTR_0001s08160	POPTR_0001s08160 (11)	scaffold_1:6219364-6219802(-) (11)	NA	Q8K0H1	Multidrug and toxin extrusion protein 1	AT4G22790.1	MATE efflux family protein 	LOC_Os03g64150.1	"MATE efflux family protein, putative, expressed"	Medtr5g011710.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.215649.1.S1_at	A	A1TS	POPTR_0001s08130	POPTR_0001s08130 (11)	scaffold_1:6189442-6189664(-) (11)	NA	NA	NA	AT1G12420.1	ACT domain repeat 8 	LOC_Os08g02500.1	"ACT domain containing protein, putative"	Medtr8g106560.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.215650.1.S1_at	A	A1TS	POPTR_0001s08070	POPTR_0001s08070 (11)	scaffold_1:6141935-6142960(+) (11)	NA	Q56XJ7	Uncharacterized protein At4g22760	AT4G22758.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27830.1). 	LOC_Os02g25080.1	expressed protein	Medtr5g011930.1	"pentatricopeptide, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215651.1.S1_at	A	A1MS	POPTR_0001s08060	POPTR_0001s08060 (11)	scaffold_1:6139067-6139548(+) (11)	NA	P0C8Q5	Pentatricopeptide repeat-containing protein At4g22765	AT4G22760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g06490.2	"pentatricopeptide, putative, expressed"	Medtr8g139400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215652.1.S1_at	A	A1TS	POPTR_0001s08040	POPTR_0001s08040 (9)	scaffold_1:6108213-6108503(-) (11)	NA	NA	NA	AT1G62870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 351 Blast hits to 343 proteins in 42 species: Archae - 2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os04g19140.1	expressed protein	Medtr8g106660.1	"F5O11.10, putative "	NA	GO:0003677|DNA binding	NA
PtpAffx.215653.1.S1_at	A	A1TS	POPTR_0001s08030	POPTR_0001s08030 (11)	scaffold_1:6083360-6084520(-) (11)	NA	P34205	Deoxyribodipyrimidine photo-lyase	AT1G12370.2	photolyase 1 	LOC_Os10g08580.1	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g011940.1	"DNA photolyase, FAD-binding "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.215654.1.S1_at	A	A1TA	POPTR_0001s08030	POPTR_0001s08030 (9)	scaffold_1:6081755-6082383(+) (10)	NA	P34205	Deoxyribodipyrimidine photo-lyase	AT1G12370.2	photolyase 1 	LOC_Os10g08580.1	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g011940.1	"DNA photolyase, FAD-binding "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.215655.1.S1_at	A	A1TS	POPTR_0001s08010	POPTR_0001s08010 (11)	scaffold_1:6067130-6067682(+) (11)	NA	NA	NA	AT1G12330.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g14500.1	expressed protein	Medtr4g156150.1	"Peptidase M14, carboxypeptidase A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215656.1.S1_at	A	A1TS	POPTR_0001s08000	POPTR_0001s08000 (11)	scaffold_1:6053808-6054109(-) (11)	NA	Q8VYP5	Probable S-acyltransferase At3g60800	AT3G60800.1	DHHC-type zinc finger family protein 	LOC_Os03g58960.1	"DHHC zinc finger domain containing protein, expressed"	Medtr4g024940.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.215657.1.S1_at	A	A1TS	POPTR_0001s07930	POPTR_0001s07930 (11)	scaffold_1:6014807-6015626(+) (11)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT4G22730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215658.1.S1_at	A	A1TS	POPTR_0001s07860	POPTR_0001s07860 (11)	scaffold_1:5952963-5953297(+) (11)	NA	Q42798	Cytochrome P450 93A1	AT4G12300.1	"cytochrome P450, family 706, subfamily A, polypeptide 4 "	LOC_Os01g50490.1	"cytochrome P450, putative, expressed"	Medtr3g169570.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.215659.1.S1_at	A	A1TS	POPTR_0001s07770	POPTR_0001s07770 (11)	scaffold_1:5871870-5872603(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215660.1.S1_s_at	A	A1TS	POPTR_0001s07750	POPTR_0001s07750 (11)	scaffold_1:5870234-5871070(+) (11)	NA	Q43468	Heat shock protein STI	AT4G12400.2	"stress-inducible protein, putative "	LOC_Os02g43020.1	"heat shock protein STI, putative, expressed"	Medtr5g012180.1	Heat shock chaperonin-binding; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215662.1.S1_at	A	A1TS	POPTR_0001s07730	POPTR_0001s07730 (11)	scaffold_1:5850597-5851062(-) (11)	NA	A7YVD7	"UPF0551 protein C8orf38 homolog, mitochondrial"	AT1G62730.1	Terpenoid synthases superfamily protein 	LOC_Os06g01470.1	"AGAP000326-PA, putative, expressed"	Medtr5g012220.1	"UPF0551 protein C8orf38 homolog, related "	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.215663.1.S1_at	A	A1TS	POPTR_0001s00220	POPTR_0001s00220 (11)	scaffold_1:75384-75876(+) (11)	NA	Q9FWX2	NAC domain-containing protein 7	AT1G12260.1	NAC 007 	LOC_Os02g42970.1	"NAC domain containing protein, putative"	Medtr8g106290.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.215664.1.S1_at	A	A1TS	POPTR_0001s00270	POPTR_0001s00270 (11)	scaffold_1:137092-138392(-) (11)	NA	O50401	Trehalose-phosphate phosphatase	AT4G12430.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g40550.2	"CPuORF23 - conserved peptide uORF-containing transcript, expressed"	Medtr8g106220.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.215665.1.S1_at	A	A1TS	POPTR_0001s00290	POPTR_0001s00290 (11)	scaffold_1:163853-164621(-) (11)	NA	NA	NA	AT4G22600.1	unknown protein; Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g44250.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215666.1.S1_at	A	A1TS	POPTR_0001s00320	POPTR_0001s00320 (11)	scaffold_1:190038-190622(-) (11)	NA	Q9SXD5	Flavin-containing monooxygenase FMO GS-OX-like 3	AT1G62620.1	Flavin-binding monooxygenase family protein 	LOC_Os10g40570.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr5g012290.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215667.1.S1_x_at	A	A1TS	POPTR_0001s00350	POPTR_0001s00350 (11)	scaffold_1:227654-228231(+) (11)	NA	Q9SV15	Probable WRKY transcription factor 11	AT4G31550.1	WRKY DNA-binding protein 11 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr1g010400.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.215669.1.S1_at	A	A1TS	POPTR_0001s00460	POPTR_0001s00460 (11)	scaffold_1:356158-357572(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215670.1.S1_at	A	A1TS	POPTR_0001s00480	POPTR_0001s00480 (11)	scaffold_1:388075-388285(+) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44370.1	"scarecrow, putative, expressed"	Medtr4g029280.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215670.1.S1_s_at	A	A2TS	POPTR_0001s00480	POPTR_0001s00480 (11)//POPTR_0003s11020 (11)	scaffold_1:388092-388367(+) (11)//scaffold_3:11863105-11863380(-) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44370.1	"scarecrow, putative, expressed"	Medtr4g029280.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215670.1.S1_x_at	A	A1TS	POPTR_0001s00480	POPTR_0001s00480 (11)	scaffold_1:388048-388449(+) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44370.1	"scarecrow, putative, expressed"	Medtr4g029280.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215671.1.S1_at	A	A1TS	POPTR_0001s00490	POPTR_0001s00490 (11)	scaffold_1:396664-397886(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215672.1.S1_at	A	A1TS	POPTR_0001s00510	POPTR_0001s00510 (11)	scaffold_1:401285-401936(-) (11)	NA	NA	NA	AT5G47580.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr8g105910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215673.1.S1_at	A	A1TS	POPTR_0001s00520	POPTR_0001s00520 (11)	scaffold_1:404183-404446(-) (11)	NA	NA	NA	AT5G47580.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr8g105910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215674.1.S1_at	A	A1TS	POPTR_0001s00540	POPTR_0001s00540 (11)	scaffold_1:422696-423098(+) (11)	NA	NA	NA	AT4G19980.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215675.1.S1_at	A	A1TS	POPTR_0001s00550	POPTR_0001s00550 (11)	scaffold_1:424344-424444(-) (11)	NA	Q8TDI0	Chromodomain-helicase-DNA-binding protein 5	AT5G44800.1	chromatin remodeling 4 	LOC_Os07g31450.1	"CHR4/MI-2-LIKE, putative, expressed"	Medtr4g165650.1	"SNF2-related; Chromo; Helicase, C-terminal; Zinc finger, FYVE/PHD-type; ; ; "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.215675.1.S1_s_at	A	A1TS	POPTR_0001s00550	POPTR_0001s00550 (11)	scaffold_1:424476-424885(-) (11)	NA	Q8TDI0	Chromodomain-helicase-DNA-binding protein 5	AT5G44800.1	chromatin remodeling 4 	LOC_Os07g31450.1	"CHR4/MI-2-LIKE, putative, expressed"	Medtr4g165650.1	"SNF2-related; Chromo; Helicase, C-terminal; Zinc finger, FYVE/PHD-type; ; ; "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.215676.1.S1_at	A	A1TS	POPTR_0001s00560	POPTR_0001s00560 (11)	scaffold_1:446683-446915(+) (11)	POPTR_0003s10940 (7)	A7J1T2	Mitogen-activated protein kinase kinase kinase 13-A	AT2G35050.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os07g25680.1	"protein kinase domain containing protein, expressed"	Medtr1g111680.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215677.1.S1_at	A	A1TS	POPTR_0001s00600	POPTR_0001s00600 (11)	scaffold_1:512652-514402(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215678.1.S1_s_at	A	A1TS	POPTR_0001s00630	POPTR_0001s00630 (11)	scaffold_1:541275-541736(-) (11)	NA	Q58CV5	Sugar phosphate exchanger 2	AT3G47420.1	phosphate starvation-induced gene 3 	LOC_Os04g46880.2	"transporter, major facilitator family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215679.1.S1_s_at	A	A1TS	POPTR_0001s00640	POPTR_0001s00640 (11)	scaffold_1:556681-557023(+) (11)	NA	Q5R8W6	Luc7-like protein 3	AT5G51410.3	LUC7 N_terminus domain-containing protein 	LOC_Os07g27300.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215687.1.S1_s_at	A	A2TS	POPTR_0010s11560	POPTR_0010s11560 (11)//POPTR_0303s00220 (11)	scaffold_10:11775686-11775911(-) (11)//scaffold_303:15978-16203(+) (11)	NA	Q0DXS3	Probable RNA-dependent RNA polymerase 1	AT1G14790.1	RNA-dependent RNA polymerase 1 	LOC_Os02g50330.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125360.1	RNA-binding region RNP-1 (RNA recognition motif); RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215688.1.S1_at	A	A2MS	POPTR_0005s10250	POPTR_0365s00200 (10)//POPTR_0005s10250 (10)	scaffold_365:3525-3924(+) (10)//scaffold_5:7338611-7339017(-) (10)	NA	O31826	Putative acyl-CoA synthetase yngI	AT2G17650.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr8g088410.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.215689.1.S1_at	A	A1MS	POPTR_0011s00940	POPTR_0011s00940 (11)	scaffold_11:486563-486668(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G05660.1	receptor like protein 33 	LOC_Os12g11930.1	"disease resistance protein SlVe2 precursor, putative, expressed"	Medtr5g048840.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.215689.1.S1_s_at	A	A1TS	POPTR_0011s00920	POPTR_0011s00920 (9)	scaffold_11:477968-487215(+) (11)//scaffold_11:485873-487175(+) (9)	POPTR_0011s00940 (8)	Q9C9H7	Receptor-like protein 12	AT3G11080.1	receptor like protein 35 	LOC_Os04g40440.1	expressed protein	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.215690.1.S1_at	A	A1TS	POPTR_0011s00930	POPTR_0011s00930 (11)	scaffold_11:474083-474231(+) (11)//scaffold_11:481581-481729(+) (11)	NA	NA	NA	AT5G25910.1	receptor like protein 52 	LOC_Os01g06876.1	"Cf-2, putative, expressed"	Medtr4g015480.1	"verticillium wilt disease resistance protein Ve2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215690.1.S1_x_at	A	A1TS	POPTR_0011s00930	POPTR_0011s00930 (11)	scaffold_11:474083-474230(+) (11)//scaffold_11:478957-481728(+) (11)	NA	NA	NA	AT5G25910.1	receptor like protein 52 	LOC_Os01g06876.1	"Cf-2, putative, expressed"	Medtr4g015480.1	"verticillium wilt disease resistance protein Ve2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215693.1.S1_at	A	A1TS	POPTR_0005s09870	POPTR_0005s09870 (11)	scaffold_5:6959793-6959864(+) (11)	NA	O22397	Potassium transporter 1	AT2G30070.1	potassium transporter 1 	LOC_Os06g45940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.215698.1.S1_x_at	A	A2TS	POPTR_0017s01550	POPTR_0017s01550 (10)//POPTR_0017s01600 (9)	scaffold_17:1062525-1062669(+) (10)//scaffold_17:1133759-1133834(+) (9)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr7g088340.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215700.1.S1_at	A	A1TS	POPTR_0005s26790	POPTR_0005s26790 (11)	scaffold_5:24668550-24669055(+) (11)	NA	Q9SYM1	Uncharacterized mscS family protein At1g78610	AT1G53470.1	mechanosensitive channel of small conductance-like 4 	LOC_Os02g44770.1	"uncharacterized mscS family protein, putative, expressed"	Medtr1g143150.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.215700.1.S1_s_at	A	A1TS	POPTR_0005s26790	POPTR_0005s26790 (11)	scaffold_5:24669062-24669527(+) (11)	NA	Q9SYM1	Uncharacterized mscS family protein At1g78610	AT1G53470.1	mechanosensitive channel of small conductance-like 4 	LOC_Os02g44770.1	"uncharacterized mscS family protein, putative, expressed"	Medtr1g143150.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.215702.1.S1_at	A	A1TS	POPTR_0009s15460	POPTR_0009s15460 (10)	scaffold_9:11952467-11952875(+) (10)	NA	Q8C0D5	Elongation factor Tu GTP-binding domain-containing protein 1	AT3G22980.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os03g44780.1	"elongation factor Tu family protein, putative, expressed"	Medtr8g139230.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.215706.1.S1_at	A	A2TS	POPTR_0067s00210	POPTR_0067s00210 (11)//POPTR_0016s01290 (9)	scaffold_16:560231-560336(+) (11)//scaffold_16:600596-600982(-) (11)//scaffold_67:16101-16209(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os04g52640.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr5g091330.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.215706.1.S1_s_at	A	A1TS	POPTR_0067s00250	POPTR_0067s00250 (11)	scaffold_67:39855-39984(-) (11)	POPTR_0016s01360 (8)	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	AT1G56140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os05g17604.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr2g090790.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.215706.1.S1_x_at	A	A1TS	POPTR_0067s00210	POPTR_0067s00210 (9)	scaffold_16:600255-600978(-) (10)//scaffold_67:15290-16207(-) (9)	POPTR_0016s01290 (6)	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os04g52640.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr5g091330.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.215709.1.S1_s_at	A	A1TS	POPTR_0018s14550	POPTR_0018s14550 (11)	scaffold_18:14706926-14707299(+) (11)	NA	NA	NA	AT1G04645.1	Plant self-incompatibility protein S1 family 	NA	NA	Medtr8g094010.1	Plant self-incompatibility S1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215711.1.S1_at	A	A1MS	POPTR_0017s02340	POPTR_0017s02340 (9)	scaffold_17:1721251-1721600(-) (9)	NA	Q43644	"NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial"	AT5G37510.1	"NADH-ubiquinone dehydrogenase, mitochondrial, putative "	LOC_Os03g50540.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr3g087270.1	Ferredoxin 	GO:0055114|oxidation reduction	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity"	NA
PtpAffx.215712.1.S1_s_at	A	A1TS	POPTR_0005s01920	POPTR_0005s01920 (11)	scaffold_5:1251754-1251949(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215713.1.S1_s_at	A	A1TS	POPTR_0005s01910	POPTR_0005s01910 (11)	scaffold_5:1250105-1250576(+) (11)	NA	NA	NA	AT1G56320.1	BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT5G49350.2); Has 60 Blast hits to 60 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g14990.1	"GCRP6 - Glycine and cysteine rich family protein precursor, putative, expressed"	Medtr1g100410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215714.1.S1_at	A	A1MS	POPTR_0005s01900	POPTR_0005s01900 (11)	scaffold_5:1242249-1245938(+) (11)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g15010.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.215715.1.S1_at	A	A1TS	POPTR_0001s23470	POPTR_0001s23470 (11)	scaffold_1:22890522-22891192(-) (11)	NA	Q9M1D0	Beta-glucosidase 16	AT3G60130.1	beta glucosidase 16 	LOC_Os04g39840.2	"Os4bglu10 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215716.1.S1_s_at	A	A1TS	POPTR_0679s00200	POPTR_0679s00200 (11)	scaffold_679:895-942(-) (11)	NA	Q93YW8	GDSL esterase/lipase At4g18970	AT4G18970.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g52770.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136390.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215723.1.S1_s_at	A	A1TS	POPTR_0014s14190	POPTR_0014s14190 (11)	scaffold_14:10382987-10383520(+) (11)	NA	Q55750	Transcription-repair-coupling factor	AT3G02060.2	"DEAD/DEAH box helicase, putative "	LOC_Os11g32880.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g099370.1	"Haem peroxidase, plant/fungal/bacterial; ATP-requiring DNA helicase RecQ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003700|transcription factor activity||GO:0003684|damaged DNA binding	NA
PtpAffx.215724.1.S1_x_at	A	A2TS	POPTR_0019s11750	POPTR_0036s00205 (9)//POPTR_0019s11750 (9)	scaffold_19:12978544-12978917(-) (9)//scaffold_36:85622-85995(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215730.1.S1_at	A	A1TS	POPTR_0015s07610	POPTR_0015s07610 (11)	scaffold_15:8887133-8887399(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215731.1.S1_at	A	A1TS	POPTR_0015s07600	POPTR_0015s07600 (11)	scaffold_15:8882314-8883279(+) (11)	NA	NA	NA	AT2G27140.1	HSP20-like chaperones superfamily protein 	LOC_Os05g51440.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr8g112860.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215732.1.S1_at	A	A1TS	POPTR_0015s07590	POPTR_0015s07590 (11)	scaffold_15:8871532-8872594(-) (11)	NA	P40973	Pectate lyase	AT5G15110.1	Pectate lyase family protein 	LOC_Os06g38510.2	"pectate lyase precursor, putative, expressed"	Medtr8g112850.1	"Pectate lyase, N-terminal; Virulence factor, pectin lyase fold "	NA	GO:0030570|pectate lyase activity	NA
PtpAffx.215733.1.S1_at	A	A1TS	POPTR_0015s07550	POPTR_0015s07550 (11)	scaffold_15:8839491-8840128(+) (11)	NA	Q40255	Probable aldehyde dehydrogenase	AT5G62530.1	aldehyde dehydrogenase 12A1 	LOC_Os05g45960.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g112760.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215734.1.S1_at	A	A1TS	POPTR_0015s07540	POPTR_0015s07540 (11)	scaffold_15:8826193-8826835(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215735.1.S1_at	A	A1TS	POPTR_0015s07530	POPTR_0015s07530 (11)	scaffold_15:8822187-8822579(-) (11)	NA	Q9LXG8	Probable WRKY transcription factor 72	AT5G15130.1	WRKY DNA-binding protein 72 	LOC_Os06g05380.1	"OsWRKY73 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr8g112750.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.215736.1.S1_at	A	A1TS	POPTR_0015s07510	POPTR_0015s07510 (10)	scaffold_15:8803341-8804068(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215737.1.S1_at	A	A1TS	POPTR_0015s07480	POPTR_0015s07480 (11)	scaffold_15:8757216-8758193(+) (11)	NA	Q84K47	ABC transporter A family member 2	AT3G47730.1	ATP-binding cassette A2 	LOC_Os08g30740.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g149810.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.215738.1.S1_at	A	A1TS	POPTR_0015s07450	POPTR_0015s07450 (11)	scaffold_15:8656993-8657574(-) (11)	NA	Q9CA63	F-box/kelch-repeat protein At1g74510	AT1G74510.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g51350.1	"OsFBK10 - F-box domain and kelch repeat containing protein, expressed"	Medtr5g040360.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215739.1.S1_at	A	A1TS	POPTR_0015s07440	POPTR_0015s07440 (11)	scaffold_15:8643372-8643905(-) (11)	NA	Q6NUQ1	RAD50-interacting protein 1	AT3G47700.1	RINT-1 / TIP-1 family 	LOC_Os02g51330.1	"MAG2, putative, expressed"	Medtr7g065190.1	Lipocalin; RINT-1/TIP-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215741.1.S1_at	A	A1TS	POPTR_0015s07390	POPTR_0015s07390 (11)	scaffold_15:8574593-8575191(+) (11)	NA	Q8GXS8	Protein PHYTOCHROME KINASE SUBSTRATE 3	AT1G18810.1	phytochrome kinase substrate-related 	NA	NA	Medtr5g043770.1	"Putative phytochrome kinase substrate 1, identical, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215742.1.S1_at	A	A1TS	POPTR_0015s07370	POPTR_0015s07370 (11)	scaffold_15:8535938-8536249(-) (11)	NA	Q9D853	Methyltransferase-like protein 10	AT1G66680.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g03090.1	"methyltransferase, putative, expressed"	Medtr7g094110.1	Methyltransferase type 12 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.215744.1.S1_at	A	A1TS	POPTR_0015s07310	POPTR_0015s07310 (11)	scaffold_15:8458019-8458495(+) (11)	NA	Q9LKL2	Two-component response regulator-like APRR1	AT5G61380.1	CCT motif -containing response regulator protein 	LOC_Os02g40510.1	"response regulator receiver domain containing protein, expressed"	Medtr4g079920.1	Response regulator receiver; CCT 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.215745.1.S1_at	A	A1TS	POPTR_0015s07280	POPTR_0015s07280 (11)	scaffold_15:8422717-8423279(+) (11)	NA	Q9FLJ8	Probable receptor-like protein kinase At5g61350	AT5G61350.1	Protein kinase superfamily protein 	LOC_Os03g55210.1	"TKL_IRAK_CrRLK1L-1.1 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g040400.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215746.1.S1_at	A	A1TS	POPTR_0015s07270	POPTR_0015s07270 (11)	scaffold_15:8416565-8417067(+) (11)	NA	C0LGJ1	Probable LRR receptor-like serine/threonine-protein kinase At1g74360	AT1G74360.1	Leucine-rich repeat protein kinase family protein 	LOC_Os07g40630.1	"BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215747.1.S1_at	A	A1TS	POPTR_0015s07260	POPTR_0015s07260 (11)	scaffold_15:8401955-8402473(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g17310.1	"prefoldin, putative, expressed"	Medtr3g147820.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215748.1.S1_at	A	A1TS	POPTR_0015s07250	POPTR_0015s07250 (11)	scaffold_15:8378708-8380077(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G18670.1	Protein kinase superfamily protein 	LOC_Os07g40550.2	"IBS1, putative, expressed"	Medtr7g011090.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215749.1.S1_at	A	A1MS	POPTR_0015s07240	POPTR_0015s07240 (11)	scaffold_15:8368624-8368949(-) (11)	NA	Q04716	"Ribosomal protein S3, mitochondrial"	ATMG00090.1	structural constituent of ribosome;protein binding 	NA	NA	Medtr1g005830.1	"Ribosomal protein S3, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215750.1.S1_at	A	A1TS	POPTR_0015s07220	POPTR_0015s07220 (11)	scaffold_15:8360532-8361115(-) (11)	POPTR_0012s06980 (7)	Q9FLQ7	Formin-like protein 20	AT5G07740.1	actin binding 	LOC_Os07g40520.1	"formin-like protein 20, putative"	Medtr1g016730.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215752.1.S1_at	A	A1TS	POPTR_0015s07160	POPTR_0015s07160 (11)	scaffold_15:8317972-8318794(+) (11)	NA	NA	NA	AT5G17390.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os12g31710.1	"universal stress protein domain containing protein, putative, expressed"	Medtr5g049170.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.215753.1.S1_at	A	A1TS	POPTR_0015s07150	POPTR_0015s07150 (11)	scaffold_15:8307786-8308322(+) (11)	NA	P20075	Embryonic protein DC-8	AT2G36640.1	embryonic cell protein 63 	LOC_Os03g20680.1	"late embryogenesis abundant protein 1, putative, expressed"	Medtr1g073780.1	Late embryogenesis abundant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215754.1.S1_at	A	A1TS	POPTR_0015s07140	POPTR_0015s07140 (11)	scaffold_15:8276793-8277364(-) (11)	NA	Q94JW8	Squamosa promoter-binding-like protein 6	AT1G69170.1	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os02g04680.2	"OsSPL3 - SBP-box gene family member, expressed"	Medtr5g048960.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.215755.1.S1_at	A	A1TS	POPTR_0015s07120	POPTR_0015s07120 (11)	scaffold_15:8234889-8235982(-) (11)	NA	Q9LFW3	COBRA-like protein 4	AT5G15630.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os03g30250.1	"COBRA-like protein precursor, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215756.1.S1_s_at	A	A1TS	POPTR_0015s07090	POPTR_0015s07090 (11)	scaffold_1398:439-1035(+) (11)//scaffold_15:8206420-8206963(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215757.1.S1_s_at	A	A3TS	POPTR_0015s07050	POPTR_0015s07070 (11)//POPTR_0015s07080 (11)//POPTR_0015s07050 (11)	scaffold_15:8141693-8141888(-) (11)//scaffold_15:8172212-8172414(-) (11)//scaffold_15:8199395-8199590(-) (11)	NA	Q0WML0	ABC transporter B family member 27	AT5G39040.1	transporter associated with antigen processing protein 2 	LOC_Os03g54790.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g034450.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.215762.1.S1_at	A	A1TS	POPTR_0015s07040	POPTR_0015s07040 (11)	scaffold_15:8126040-8127096(-) (11)	NA	P87061	Tip elongation aberrant protein 1	AT1G18610.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215764.1.S1_at	A	A1TS	POPTR_0004s16680	POPTR_0004s16680 (11)	scaffold_2704:331-417(-) (10)//scaffold_4:17077298-17077475(+) (11)	NA	NA	NA	AT2G21440.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g58720.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g093820.1	RNA-binding region RNP-1 (RNA recognition motif) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215764.1.S1_s_at	A	A1TS	POPTR_0004s16680	POPTR_0004s16680 (11)	scaffold_4:17077014-17077292(+) (11)	NA	NA	NA	AT2G21440.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g58720.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g093820.1	RNA-binding region RNP-1 (RNA recognition motif) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215767.1.S1_at	A	A1TS	POPTR_0009s00260	POPTR_0009s00260 (11)	scaffold_9:75482-78528(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215768.1.S1_at	A	A1MS	POPTR_0010s23930	POPTR_0010s23930 (11)	scaffold_10:20372252-20372639(+) (11)	NA	Q5HZ60	mRNA cap guanine-N7 methyltransferase 2	AT3G52210.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g54000.1	"mRNA cap guanine-N7 methyltransferase 2, putative, expressed"	Medtr3g124320.1	Methyltransferase type 12 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.215776.1.S1_at	A	A1TS	POPTR_0013s10850	POPTR_0013s10850 (11)	scaffold_13:11178434-11178689(-) (11)//scaffold_13:11284728-11284983(-) (11)//scaffold_13:11525103-11525358(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215777.1.S1_at	A	A1MS	POPTR_1325s00010	POPTR_1325s00010 (10)	scaffold_1325:787-1414(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215779.1.S1_at	A	A1TS	POPTR_0013s11160	POPTR_0013s11160 (11)	scaffold_13:11836888-11837353(-) (11)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65110.1	"POT family protein, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.215782.1.S1_at	A	A1TS	POPTR_0004s15550	POPTR_0004s15550 (11)	scaffold_4:16161712-16162168(-) (11)	NA	Q61FW2	F-box/WD repeat-containing protein sel-10	AT3G18950.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52870.1	"WD-40 repeat family protein, putative, expressed"	Medtr4g093020.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215783.1.S1_at	A	A1MS	POPTR_0004s15490	POPTR_0004s15490 (10)	scaffold_4:16132361-16133112(+) (10)	NA	Q8BKX6	Serine/threonine-protein kinase SMG1	AT1G50030.2	target of rapamycin 	LOC_Os03g52794.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g093180.1	hypothetical protein 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.215784.1.S1_at	A	A1TS	POPTR_0004s15490	POPTR_0004s15490 (11)	scaffold_4:16124798-16125132(+) (11)	NA	Q8BKX6	Serine/threonine-protein kinase SMG1	AT1G50030.2	target of rapamycin 	LOC_Os03g52794.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g093180.1	hypothetical protein 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.215785.1.S1_at	A	A1TS	POPTR_0004s15480	POPTR_0004s15480 (11)	scaffold_4:16107514-16108077(-) (11)	NA	Q9ZQF1	"Pentatricopeptide repeat-containing protein At2g15630, mitochondrial"	AT2G15630.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g40130.1	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g092860.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215786.1.S1_at	A	A1MS	POPTR_0004s15450	POPTR_0004s15450 (11)	scaffold_4:16077095-16077493(-) (11)	NA	NA	NA	AT1G49470.1	Family of unknown function (DUF716)  	LOC_Os08g36040.1	"plant viral response family protein, putative, expressed"	Medtr4g092830.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215787.1.S1_at	A	A1TS	POPTR_0004s15430	POPTR_0004s15430 (11)	scaffold_4:16068289-16069023(+) (11)	NA	Q9XIB5	B3 domain-containing protein REM19	AT1G49480.1	related to vernalization1 1 	LOC_Os12g40070.1	B3 DNA binding domain containing protein	Medtr4g092810.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.215788.1.S1_at	A	A1TS	POPTR_0004s15420	POPTR_0004s15420 (11)	scaffold_4:16064527-16065110(+) (11)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	NA	NA	Medtr4g092810.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.215789.1.S1_at	A	A1TS	POPTR_0004s15410	POPTR_0004s15410 (11)	scaffold_4:16052165-16053113(+) (11)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	LOC_Os11g09160.1	"B3 DNA binding domain containing protein, expressed"	Medtr4g092810.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.215790.1.S1_at	A	A1TS	POPTR_0004s15390	POPTR_0004s15390 (11)	scaffold_4:16031858-16032678(-) (11)	NA	NA	NA	AT3G11800.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 74 Blast hits to 73 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g57320.1	"expp1 protein precursor, putative, expressed"	Medtr4g092780.1	"expp1 protein precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215791.1.S1_at	A	A1TS	POPTR_0004s15370	POPTR_0004s15370 (11)	scaffold_4:16023751-16026532(+) (11)	NA	NA	NA	AT2G15900.1	"Phox-associated domain;Phox-like;Sorting nexin, C-terminal "	LOC_Os11g06040.1	"PX domain containing protein, putative, expressed"	Medtr4g128670.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.215792.1.S1_at	A	A1TS	POPTR_0004s15360	POPTR_0004s15360 (10)	scaffold_4:16006274-16006394(-) (10)	NA	Q9XIL9	Pollen-specific leucine-rich repeat extensin-like protein 3	AT2G15880.1	Leucine-rich repeat (LRR) family protein 	LOC_Os12g35710.1	"uncharacterized protein At4g06744 precursor, putative, expressed"	Medtr3g148740.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.215792.1.S1_s_at	A	A2TS	POPTR_0004s15360	POPTR_0009s11130 (11)//POPTR_0004s15360 (11)	scaffold_4:16006185-16006443(-) (11)//scaffold_9:9347680-9347938(-) (11)	NA	Q9XIL9	Pollen-specific leucine-rich repeat extensin-like protein 3	AT2G15880.1	Leucine-rich repeat (LRR) family protein 	LOC_Os12g35710.1	"uncharacterized protein At4g06744 precursor, putative, expressed"	Medtr3g148740.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.215794.1.S1_at	A	A1TS	POPTR_0004s15340	POPTR_0004s15340 (11)	scaffold_4:15988154-15988757(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215795.1.S1_at	A	A1TS	POPTR_0004s15310	POPTR_0004s15310 (11)	scaffold_4:15964764-15964978(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215796.1.S1_at	A	A1TS	POPTR_0004s15300	POPTR_0004s15300 (11)	scaffold_4:15950362-15951591(-) (11)	NA	Q9GYZ0	Kinesin-like protein KIF15	AT3G19050.1	phragmoplast orienting kinesin 2 	LOC_Os12g39980.1	"kinesin motor domain containing protein, putative, expressed"	Medtr4g128980.1	"Kinesin, motor region; Kinesin-related "	GO:0007018|microtubule-based movement||GO:0016032|viral reproduction	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.215797.1.S1_at	A	A1TS	POPTR_0004s15290	POPTR_0004s15290 (11)	scaffold_4:15946466-15947879(-) (11)	NA	Q93Z70	"Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic"	AT2G19940.2	"oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding "	LOC_Os03g42110.1	"semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed"	Medtr1g013810.1	"Aspartate-semialdehyde dehydrogenase, microbial; Semialdehyde dehydrogenase, NAD - binding "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016620|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0046983|protein dimerization activity"	GO:0005737|cytoplasm
PtpAffx.215799.1.S1_at	A	A1MS	POPTR_0004s15263	POPTR_0004s15263 (11)	scaffold_4:15907082-15907642(-) (11)	NA	Q9XIL5	Pentatricopeptide repeat-containing protein At2g15820	AT2G15820.1	endonucleases 	LOC_Os02g47360.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g032010.1	LAGLIDADG DNA endonuclease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215800.1.S1_at	A	A1TS	POPTR_0004s15210	POPTR_0004s15210 (11)	scaffold_4:15863917-15865165(-) (11)	NA	Q05CL8	La-related protein 7	AT3G19090.1	RNA-binding protein 	LOC_Os07g01260.1	"la domain containing protein, expressed"	Medtr4g128970.1	"RNA-binding protein Lupus La; Ataxin-2, C-terminal; Winged helix repressor DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215801.1.S1_at	A	A1TS	POPTR_0004s15190	POPTR_0004s15190 (11)	scaffold_4:15845055-15845864(-) (11)	NA	Q42578	Peroxidase 53	AT5G06720.1	peroxidase 2 	LOC_Os03g32050.1	"peroxidase precursor, putative, expressed"	Medtr5g017870.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215802.1.S1_s_at	A	A1TS	POPTR_0004s15180	POPTR_0004s15180 (11)	scaffold_4:15832661-15833066(-) (11)	NA	NA	NA	AT2G26520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g129070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215803.1.S1_at	A	A1TS	POPTR_0004s15140	POPTR_0004s15140 (11)	scaffold_4:15804188-15804576(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215804.1.S1_at	A	A1TS	POPTR_0004s15130	POPTR_0004s15130 (11)	scaffold_4:15798983-15800788(+) (11)	NA	Q8CBG9	RING finger protein 170	AT4G33940.1	RING/U-box superfamily protein 	LOC_Os03g62250.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g013260.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215807.1.S1_at	A	A1TS	POPTR_0004s15090	POPTR_0004s15090 (11)	scaffold_4:15759351-15759624(+) (11)	NA	NA	NA	AT2G15760.1	Protein of unknown function (DUF1645) 	LOC_Os11g44920.1	expressed protein	Medtr4g129240.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215808.1.S1_s_at	A	A1TS	POPTR_0004s15050	POPTR_0004s15050 (11)	scaffold_4:15717427-15717788(-) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT2G03550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g11130.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.215809.1.S1_at	A	A1TS	POPTR_0004s15050	POPTR_0004s15050 (11)	scaffold_4:15711447-15717417(-) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT2G03550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g11130.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.215810.1.S1_at	A	A1TS	POPTR_0004s15030	POPTR_0004s15030 (9)	scaffold_4:15695099-15695627(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215811.1.S1_at	A	A1TS	POPTR_0004s14950	POPTR_0004s14950 (11)	scaffold_4:15606216-15606653(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215812.1.S1_at	A	A1TS	POPTR_0004s14940	POPTR_0004s14940 (11)	scaffold_4:15581678-15582762(-) (11)	NA	Q94CL9	Cyclin-dependent kinase inhibitor 7	AT1G49620.1	Cyclin-dependent kinase inhibitor family protein 	NA	NA	Medtr5g017600.1	Cyclin-dependent kinase inhibitor 	GO:0007050|cell cycle arrest	GO:0004861|cyclin-dependent protein kinase inhibitor activity	GO:0005634|nucleus
PtpAffx.215813.1.S1_at	A	A1TS	POPTR_0004s14910	POPTR_0004s14910 (11)	scaffold_4:15567653-15568568(-) (11)	NA	Q1G3M3	B3 domain-containing protein At3g19184	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os06g09420.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.215814.1.S1_at	A	A1TS	POPTR_0004s14890	POPTR_0004s14890 (11)	scaffold_4:15551999-15552135(-) (11)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215814.1.S1_x_at	A	A1TS	POPTR_0004s14890	POPTR_0004s14890 (11)	scaffold_4:15551984-15552152(-) (11)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215815.1.S1_at	A	A1TS	POPTR_0004s14890	POPTR_0004s14890 (11)	scaffold_4:15546076-15546664(-) (11)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215816.1.S1_at	A	A1MS	POPTR_0004s14870	POPTR_0004s14870 (10)	scaffold_4:15536028-15537189(+) (11)	NA	B4KHL5	DNA repair and recombination protein RAD54-like	AT3G19210.1	homolog of RAD54 	LOC_Os02g52510.1	"SNF2 family N-terminal domain containing protein, expressed"	AC151525_20.1	"SNF2-related; Helicase, C-terminal; AC151525.18 88003-95580 H EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.215817.1.S1_at	A	A2TS	POPTR_0004s14840	POPTR_0270s00200 (10)//POPTR_0004s14840 (10)	scaffold_270:2722-3113(-) (10)//scaffold_4:15506566-15506957(+) (10)	NA	Q9SZ06	Ethylene-responsive transcription factor ERF109	AT4G34410.1	redox responsive transcription factor 1 	LOC_Os08g36920.1	"AP2 domain containing protein, expressed"	Medtr4g129680.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.215818.1.S1_x_at	A	A1TS	POPTR_0004s14830	POPTR_0004s14830 (11)	scaffold_4:15490853-15492743(+) (11)	NA	Q9LJK3	LAG1 longevity assurance homolog 2	AT3G19260.1	LAG1 homologue 2 	LOC_Os03g15750.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.215819.1.S1_at	A	A1TS	POPTR_0004s14820	POPTR_0004s14820 (11)	scaffold_4:15482618-15482772(+) (11)	NA	Q9LJK2	Abscisic acid 8'-hydroxylase 4	AT3G19270.1	"cytochrome P450, family 707, subfamily A, polypeptide 4 "	LOC_Os09g28390.1	"cytochrome P450, putative, expressed"	Medtr4g129760.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.215821.1.S1_at	A	A1TS	POPTR_0004s14800	POPTR_0004s14800 (11)	scaffold_4:15437902-15438767(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g129860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215822.1.S1_at	A	A1TS	POPTR_0004s14790	POPTR_0004s14790 (11)	scaffold_4:15425064-15426951(-) (11)	NA	Q9M7Q2	ABSCISIC ACID-INSENSITIVE 5-like protein 7	AT3G19290.1	ABRE binding factor 4 	LOC_Os09g28310.1	"bZIP transcription factor, putative, expressed"	Medtr4g129920.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.215822.1.S1_s_at	A	A1TS	POPTR_0004s14790	POPTR_0004s14790 (11)	scaffold_4:15425782-15427022(-) (11)	NA	Q9M7Q2	ABSCISIC ACID-INSENSITIVE 5-like protein 7	AT3G19290.1	ABRE binding factor 4 	LOC_Os09g28310.1	"bZIP transcription factor, putative, expressed"	Medtr4g129920.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.215824.1.S1_at	A	A1TS	POPTR_0004s14760	POPTR_0004s14760 (11)	scaffold_4:15412703-15413236(+) (11)	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT1G49730.1	Protein kinase superfamily protein 	LOC_Os04g59320.1	"protein kinase domain containing protein, expressed"	Medtr4g130010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215825.1.S1_at	A	A1TS	POPTR_0004s14760	POPTR_0004s14760 (11)	scaffold_4:15408966-15410043(+) (11)	POPTR_0009s10330 (6)	Q9FX99	Probable receptor-like protein kinase At1g49730	AT1G49730.1	Protein kinase superfamily protein 	LOC_Os04g59320.1	"protein kinase domain containing protein, expressed"	Medtr4g130010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215826.1.S1_at	A	A1TS	POPTR_0004s14760	POPTR_0004s14760 (11)	scaffold_4:15407808-15408715(+) (11)	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT1G49730.1	Protein kinase superfamily protein 	LOC_Os04g59320.1	"protein kinase domain containing protein, expressed"	Medtr4g130010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215830.1.S1_s_at	A	A3TS	POPTR_0001s42840	POPTR_0001s42840 (11)//POPTR_0001s42870 (11)//POPTR_0001s42880 (11)	scaffold_1:42863624-42863982(-) (11)//scaffold_1:42929835-42930193(-) (11)//scaffold_1:42953579-42953937(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os01g04070.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr5g094230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.215848.1.S1_at	A	A2TS	POPTR_0455s00210	POPTR_0455s00210 (11)//POPTR_0010s16340 (10)	scaffold_10:15308163-15308460(+) (10)//scaffold_455:10432-10847(-) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.215850.1.S1_at	A	A1TS	POPTR_0017s07780	POPTR_0017s07780 (11)	scaffold_17:6050621-6050770(+) (11)	NA	NA	NA	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os09g29660.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g120740.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215850.1.S1_x_at	A	A1TS	POPTR_0017s07780	POPTR_0017s07780 (11)	scaffold_17:6050606-6050770(+) (11)	NA	NA	NA	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os09g29660.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g120740.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215851.1.S1_at	A	A1MS	POPTR_0019s14220	POPTR_0019s14220 (9)	scaffold_19:14973378-14973585(+) (9)	POPTR_0019s14240 (6)	Q9ZR08	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	AT4G03230.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g103220.1	"ATP-dependent helicase, DEAD-box; Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.215859.1.S1_s_at	A	A1TS	POPTR_0005s00280	POPTR_0005s00280 (11)	scaffold_5:44269-44470(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215860.1.S1_at	A	A1TS	POPTR_0005s00210	POPTR_0005s00210 (11)	scaffold_5:9107-9286(-) (11)	NA	Q8L7S8	"DEAD-box ATP-dependent RNA helicase 3, chloroplastic"	AT5G26742.2	DEAD box RNA helicase (RH3) 	LOC_Os03g61220.1	"DEAD-box ATP-dependent RNA helicase 3, putative, expressed"	Medtr7g134530.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.215861.1.S1_at	A	A1TS	POPTR_0005s00210	POPTR_0005s00210 (11)	scaffold_5:9306-10264(-) (11)	NA	Q8L7S8	"DEAD-box ATP-dependent RNA helicase 3, chloroplastic"	AT5G26742.2	DEAD box RNA helicase (RH3) 	LOC_Os03g61220.1	"DEAD-box ATP-dependent RNA helicase 3, putative, expressed"	Medtr7g134530.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.215862.1.S1_at	A	A1TS	POPTR_0005s00220	POPTR_0005s00220 (9)	scaffold_5:14409-14594(+) (11)	NA	Q8BG09	Transmembrane protein 184B	AT3G05940.1	Protein of unknown function (DUF300) 	LOC_Os03g61210.1	"domain of unknown function domain containing protein, expressed"	Medtr7g134570.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215864.1.S1_at	A	A1TS	POPTR_0005s00290	POPTR_0005s00290 (11)	scaffold_5:50851-51512(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215865.1.S1_s_at	A	A1TS	POPTR_0005s00300	POPTR_0005s00300 (11)	scaffold_5:65960-67513(+) (11)	NA	O13775	"Probable glutamyl-tRNA synthetase, cytoplasmic"	AT5G26710.1	"Glutamyl/glutaminyl-tRNA synthetase, class Ic "	LOC_Os01g16520.1	"glutamyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr1g103230.1	"Glutamyl-tRNA synthetase, class Ic; Glutaminyl-tRNA synthetase; Glutathione S-transferase, C-terminal-like "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.215866.1.S1_at	A	A1TS	POPTR_0005s00320	POPTR_0005s00320 (11)	scaffold_5:75036-75587(+) (11)	NA	Q93VV5	Probable peptide/nitrate transporter At1g59740	AT1G59740.1	Major facilitator superfamily protein 	LOC_Os01g54515.1	"peptide transporter PTR2, putative, expressed"	Medtr7g134690.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.215868.1.S1_at	A	A1TS	POPTR_0005s00360	POPTR_0005s00360 (11)	scaffold_5:108392-109557(-) (11)	NA	O80536	Transcription factor PIF3	AT1G09530.2	phytochrome interacting factor 3 	LOC_Os01g18290.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g103000.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.215869.1.S1_at	A	A1TS	POPTR_0005s00420	POPTR_0005s00420 (11)	scaffold_5:134908-135341(+) (11)	NA	Q9FJK3	Agamous-like MADS-box protein AGL80	AT5G48670.1	AGAMOUS-like 80 	LOC_Os01g18440.1	OsMADS89 - MADS-box family gene with M-gamma type-box	Medtr3g087250.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.215870.1.S1_s_at	A	A1TS	POPTR_0005s00440	POPTR_0005s00440 (11)	scaffold_5:146650-147129(-) (11)//scaffold_5:149506-149985(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215871.1.S1_at	A	A1TS	POPTR_0005s00500	POPTR_0005s00500 (11)	scaffold_5:181953-182520(+) (11)	NA	Q9FMF6	"Pentatricopeptide repeat-containing protein At5g64320, mitochondrial"	AT5G64320.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g58120.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g097270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215872.1.S1_at	A	A1TS	POPTR_0005s00520	POPTR_0005s00520 (11)	scaffold_5:186204-186473(-) (11)	NA	Q9SJG2	Probable receptor-like protein kinase At2g42960	AT1G56720.3	Protein kinase superfamily protein 	LOC_Os01g21960.1	"serine/threonine-protein kinase, putative, expressed"	AC235094_15.1	"Serine/threonine protein kinase, active site AC235094.1 73772-69130 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.215873.1.S1_at	A	A1TS	POPTR_0005s00540	POPTR_0005s00540 (11)	scaffold_5:211274-212762(+) (11)	NA	Q9Z0R0	Serine/threonine-protein kinase haspin	AT1G09450.1	Protein kinase superfamily protein 	LOC_Os07g44360.1	"serine/threonine-protein kinase Haspin, putative, expressed"	AC235094_20.1	Protein kinase-like AC235094.1 109355-115235 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215874.1.S1_at	A	A1TS	POPTR_0005s00560	POPTR_0005s00560 (11)	scaffold_5:219132-220265(-) (11)	NA	NA	NA	AT5G26770.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g04530.1	"IF, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215875.1.S1_at	A	A1TS	POPTR_0005s00630	POPTR_0005s00630 (11)	scaffold_5:265673-265875(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215876.1.S1_at	A	A1TS	POPTR_0505s00210	POPTR_0505s00210 (10)	scaffold_5:279290-279993(-) (9)//scaffold_505:5796-6416(-) (11)	POPTR_0005s00660 (8)	Q76PD2	LIM domain and RING finger protein C1223.01	AT3G62240.1	RING/U-box superfamily protein 	LOC_Os05g19970.1	"ZOS5-06 - C2H2 zinc finger protein, expressed"	Medtr7g133640.1	"Zinc finger, RING-type; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215877.1.S1_at	A	A1TS	POPTR_0005s00680	POPTR_0005s00680 (11)	scaffold_5:292017-292642(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215878.1.S1_at	A	A1TS	POPTR_0005s00690	POPTR_0005s00690 (11)	scaffold_5:301056-301541(+) (11)	NA	O82491	FACT complex subunit SPT16	AT4G10710.1	global transcription factor C 	LOC_Os04g25550.1	"FACT complex subunit SPT16, putative, expressed"	Medtr3g086680.1	Peptidase M24; 	GO:0009987|cellular process	NA	NA
PtpAffx.215878.1.S1_s_at	A	A2TS	POPTR_0005s00690	POPTR_0005s00690 (11)//POPTR_0013s00590 (11)	scaffold_13:285137-285343(+) (11)//scaffold_5:301096-301302(+) (11)	NA	O82491	FACT complex subunit SPT16	AT4G10710.1	global transcription factor C 	LOC_Os04g25550.1	"FACT complex subunit SPT16, putative, expressed"	Medtr3g086680.1	Peptidase M24; 	GO:0009987|cellular process	NA	NA
PtpAffx.215879.1.S1_at	A	A1TS	POPTR_0005s00700	POPTR_0005s00700 (9)	scaffold_5:304904-305288(-) (11)	NA	Q8H6B1	FACT complex subunit SPT16	AT4G10710.1	global transcription factor C 	LOC_Os04g25550.1	"FACT complex subunit SPT16, putative, expressed"	Medtr3g086680.1	Peptidase M24; 	GO:0009987|cellular process	NA	NA
PtpAffx.215880.1.S1_at	A	A1TS	POPTR_0005s00720	POPTR_0005s00720 (11)	scaffold_5:324996-325468(+) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G56710.1	Pectin lyase-like superfamily protein 	LOC_Os05g20020.1	"polygalacturonase, putative, expressed"	Medtr1g106120.1	"Ribosome-binding factor A; Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.215881.1.S1_at	A	A1TS	POPTR_0005s00725	POPTR_0005s00725 (11)	scaffold_5:326920-327125(+) (11)	NA	O78328	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT3G21500.1	1-deoxy-D-xylulose 5-phosphate synthase 1 	LOC_Os05g33840.1	"transketolase, putative, expressed"	Medtr8g079280.1	"Transketolase, C-terminal-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215882.1.S1_at	A	A1TS	POPTR_0005s00730	POPTR_0005s00730 (11)	scaffold_5:329948-330508(+) (11)	NA	P0C899	Putative pentatricopeptide repeat-containing protein At3g49140	AT3G49142.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g13830.1	"pentatricopeptide, putative, expressed"	Medtr8g073570.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215883.1.S1_at	A	A1TS	POPTR_0005s00760	POPTR_0005s00760 (11)	scaffold_5:343209-343423(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215884.1.S1_at	A	A1TS	POPTR_0005s00780	POPTR_0005s00780 (11)	scaffold_5:360207-360276(+) (11)	POPTR_0005s00760 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215884.1.S1_x_at	A	A1TS	POPTR_0005s00780	POPTR_0005s00780 (11)	scaffold_5:343302-343854(+) (9)//scaffold_5:359690-360276(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215885.1.S1_at	A	A1TS	POPTR_0005s00820	POPTR_0005s00820 (10)	scaffold_5:379194-379963(+) (10)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G09380.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os01g19290.1	"integral membrane protein DUF6 containing protein, expressed"	Medtr1g037370.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.215886.1.S1_at	A	A1TS	POPTR_0005s00860	POPTR_0005s00860 (11)	scaffold_5:395370-396721(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215887.1.S1_at	A	A1TS	POPTR_0005s00890	POPTR_0005s00890 (11)	scaffold_5:423205-423692(+) (11)	NA	NA	NA	AT1G09360.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	NA	NA	Medtr2g037780.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.215888.1.S1_at	A	A1TS	POPTR_0005s01330	POPTR_0005s01330 (11)	scaffold_5:880996-881613(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215888.1.S1_x_at	A	A1TS	POPTR_0005s01330	POPTR_0005s01330 (11)	scaffold_5:880913-881628(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215889.1.S1_s_at	A	A2TS	POPTR_0005s01050	POPTR_0005s01050 (11)//POPTR_0005s01060 (11)	scaffold_5:555755-555801(-) (11)//scaffold_5:567516-567562(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os09g13410.1	"plant protein of unknown function domain containing protein, expressed"	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215889.1.S1_x_at	A	A1TS	POPTR_0005s01050	POPTR_0005s01050 (11)	scaffold_5:555527-555897(-) (11)	POPTR_0005s01060 (7)	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os09g13410.1	"plant protein of unknown function domain containing protein, expressed"	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215890.1.S1_s_at	A	A1TS	POPTR_0005s01260	POPTR_0005s01260 (11)	scaffold_5:797421-797478(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215890.1.S1_x_at	A	A1TS	POPTR_0005s01260	POPTR_0005s01260 (11)	scaffold_5:797312-797622(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215894.1.S1_s_at	A	A3TS	POPTR_0005s01210	POPTR_0005s01210 (11)//POPTR_0005s01280 (11)//POPTR_0005s01350 (11)	scaffold_5:549086-549237(+) (9)//scaffold_5:766364-766515(+) (11)//scaffold_5:817656-817807(+) (11)//scaffold_5:899890-900041(+) (11)//scaffold_81:38767-38918(-) (11)	NA	Q9LFQ3	Paired amphipathic helix protein Sin3-like 2	AT5G15020.2	SIN3-like 2 	LOC_Os05g01020.2	"transcriptional repressor, putative, expressed"	Medtr6g009630.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.215895.1.S1_s_at	A	A8TS	POPTR_0003s02290	POPTR_0005s01340 (11)//POPTR_0018s03140 (11)//POPTR_0005s01120 (11)//POPTR_0003s02290 (11)//POPTR_0005s00990 (11)//POPTR_0005s01220 (11)//POPTR_0005s01190 (11)//POPTR_0005s01020 (11)	scaffold_18:2795402-2795687(-) (11)//scaffold_3:2373324-2373609(-) (11)//scaffold_5:476542-476827(-) (11)//scaffold_5:542477-542762(-) (11)//scaffold_5:648775-649060(-) (11)//scaffold_5:690883-691168(-) (11)//scaffold_5:760017-760302(-) (11)//scaffold_5:770438-770714(-) (11)//scaffold_5:894571-894856(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028060.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215898.1.S1_at	A	A1TS	POPTR_0005s01360	POPTR_0005s01360 (11)	scaffold_5:909144-909545(+) (11)	NA	NA	NA	AT1G08060.2	ATP-dependent helicase family protein 	LOC_Os06g01320.1	"chromo domain containing protein, expressed"	fpc265_22.1	"Helicase, C-terminal fpc265 101840-115910 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215899.1.S1_s_at	A	A1MS	POPTR_0005s01390	POPTR_0005s01390 (11)	scaffold_5:923964-924367(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os06g47800.1	"disease resistance protein RGA3, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215900.1.S1_at	A	A1TS	POPTR_0005s01390	POPTR_0005s01390 (11)	scaffold_5:924539-924875(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os06g47800.1	"disease resistance protein RGA3, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215902.1.S1_at	A	A1TS	POPTR_0005s01420	POPTR_0005s01420 (11)	scaffold_5:934824-935805(+) (11)	NA	Q5R478	AP-3 complex subunit mu-1	AT1G56590.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os05g31780.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g034870.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.215903.1.S1_at	A	A1TS	POPTR_0005s01440	POPTR_0005s01440 (11)	scaffold_5:947965-948375(+) (11)	NA	Q9FXA9	Putative pentatricopeptide repeat-containing protein At1g56570	AT1G56570.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g19380.1	"pentatricopeptide, putative"	Medtr1g102670.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215904.1.S1_at	A	A1TS	POPTR_0005s01450	POPTR_0005s01450 (11)	scaffold_5:950483-951011(-) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT1G08070.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g19980.2	"tetratricopeptide-like helical, putative, expressed"	Medtr3g069190.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215905.1.S1_at	A	A1MA	POPTR_0005s01460	POPTR_0005s01460 (11)	scaffold_5:954866-955424(-) (11)	NA	NA	NA	AT1G09320.1	agenet domain-containing protein 	LOC_Os05g04180.1	"agenet domain containing protein, putative, expressed"	Medtr2g037560.1	SH3; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.215906.1.S1_at	A	A1TS	POPTR_0005s01480	POPTR_0005s01480 (10)	scaffold_5:968680-969801(-) (11)	NA	Q5T7W7	Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2	AT1G09280.1	"CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). "	LOC_Os12g37630.1	"domain of unknown function family protein, expressed"	Medtr5g076610.1	Rhodanese-like; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215908.1.S1_x_at	A	A1TS	POPTR_2334s00200	POPTR_2334s00200 (11)	scaffold_2334:630-875(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028010.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.215909.1.S1_at	A	A1TS	POPTR_0005s01500	POPTR_0005s01500 (10)	scaffold_5:986073-986517(-) (10)	POPTR_0005s01230 (6)	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.215911.1.S1_at	A	A2TS	POPTR_0005s01520	POPTR_0081s00230 (11)//POPTR_0005s01520 (11)	scaffold_5:999789-1000014(-) (11)//scaffold_81:35871-36096(+) (11)	NA	P33190	Ubiquitin-60S ribosomal protein L40	AT5G37640.1	ubiquitin 9 	LOC_Os06g44080.1	"ubiquitin family protein, putative, expressed"	Medtr1g079000.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215912.1.S1_s_at	A	A1TS	POPTR_0005s01560	POPTR_0005s01560 (11)	scaffold_5:1028093-1028434(-) (11)	NA	Q9FI80	Pentatricopeptide repeat-containing protein At5g48910	AT5G48910.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g44299.1	"pentatricopeptide, putative"	Medtr8g119600.1	Pancreatic ribonuclease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215913.1.S1_at	A	A1TS	POPTR_0005s01560	POPTR_0005s01560 (11)	scaffold_5:1027584-1027761(-) (11)	NA	Q9FI80	Pentatricopeptide repeat-containing protein At5g48910	AT5G48910.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g44299.1	"pentatricopeptide, putative"	Medtr8g119600.1	Pancreatic ribonuclease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215914.1.S1_at	A	A1TS	POPTR_0005s01570	POPTR_0005s01570 (11)	scaffold_5:1031001-1031298(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215915.1.S1_at	A	A1TS	POPTR_0005s01580	POPTR_0005s01580 (11)	scaffold_5:1035923-1036219(+) (11)	NA	Q3E9D3	Probable pectinesterase 55	AT5G18990.1	Pectin lyase-like superfamily protein 	LOC_Os01g19440.1	"pectinesterase, putative"	AC146557_2.1	Pectinesterase AC146557.33 4034-7009 H EGN_Mt090430 200	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.215916.1.S1_at	A	A1TS	POPTR_0005s01590	POPTR_0005s01590 (11)	scaffold_5:1041549-1042899(+) (11)	NA	Q9I9R3	Solute carrier family 40 member 1	AT5G26820.1	iron-regulated protein 3 	LOC_Os12g37530.1	expressed protein	NA	NA	GO:0006826|iron ion transport	GO:0005381|iron ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.215917.1.S1_at	A	A1TS	POPTR_0056s00210	POPTR_0056s00210 (11)	scaffold_56:7434-7835(-) (11)	NA	NA	NA	AT2G25470.1	receptor like protein 21 	NA	NA	Medtr3g166640.1	"Leucine-rich repeat, typical subtype "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215918.1.S1_x_at	A	A1TS	POPTR_0005s01650	POPTR_0005s01650 (10)	scaffold_5:1104413-1104723(-) (11)	POPTR_0056s00250 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215926.1.S1_at	A	A1MS	POPTR_0014s16730	POPTR_0014s16730 (10)	scaffold_14:12818029-12818084(-) (10)	NA	Q9SJD4	Long chain acyl-CoA synthetase 8	AT2G04350.2	AMP-dependent synthetase and ligase family protein 	LOC_Os05g25310.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g106650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.215931.1.S1_at	A	A1MS	POPTR_0001s36140	POPTR_0001s36140 (11)	scaffold_1:34638337-34638388(-) (11)	NA	NA	NA	AT5G40740.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g22370.1	expressed protein	Medtr6g092630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215931.1.S1_s_at	A	A1TS	POPTR_0001s36140	POPTR_0001s36140 (11)	scaffold_1:34638722-34639080(-) (11)	NA	NA	NA	AT5G40740.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g22370.1	expressed protein	Medtr6g092630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215932.1.S1_s_at	A	A1TS	POPTR_0011s10370	POPTR_0011s10370 (11)	scaffold_11:12793164-12793214(-) (11)	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215934.1.S1_s_at	A	A1TS	POPTR_0013s11290	POPTR_0013s11290 (11)	scaffold_13:11954557-11955131(-) (11)	NA	Q9ZVX1	Probable ubiquitin-conjugating enzyme E2 23	AT2G16920.1	ubiquitin-conjugating enzyme 23 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr2g100190.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.215935.1.S1_s_at	A	A1TS	POPTR_0016s03270	POPTR_0016s03270 (11)	scaffold_16:1675360-1676260(-) (11)	NA	Q6R8G7	Phosphate transporter PHO1 homolog 3	AT1G14040.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.215939.1.S1_s_at	A	A1TS	POPTR_0008s22820	POPTR_0008s22820 (11)	scaffold_8:17611101-17611417(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G54010.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g26950.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g109090.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215941.1.S1_at	A	A1TS	POPTR_0008s22800	POPTR_0008s22800 (11)	scaffold_8:17577303-17577561(-) (11)	NA	Q80Z37	E3 ubiquitin-protein ligase Topors	AT2G39100.1	RING/U-box superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215943.1.S1_at	A	A1TS	POPTR_0008s22750	POPTR_0008s22750 (11)	scaffold_8:17521052-17521214(-) (11)	NA	Q6J9Q2	Ethylene-responsive transcription factor ERF086	AT5G18560.1	Integrase-type DNA-binding superfamily protein 	LOC_Os07g47330.1	"AP2 domain containing protein, expressed"	Medtr8g139310.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.215944.1.S1_at	A	A1TS	POPTR_0008s22730	POPTR_0008s22730 (11)	scaffold_8:17514490-17517838(+) (11)	NA	Q6NPN3	Zinc finger CCCH domain-containing protein 58	AT5G18550.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g15460.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr2g024920.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.215946.1.S1_at	A	A1TS	POPTR_0008s22720	POPTR_0008s22720 (11)	scaffold_8:17502677-17502984(+) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.2	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215948.1.S1_s_at	A	A2TS	POPTR_0008s21190	POPTR_0008s22710 (11)//POPTR_0008s21190 (11)	scaffold_8:15400903-15401292(-) (11)//scaffold_8:17452377-17452766(+) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215949.1.S1_at	A	A1MS	POPTR_0008s21190	POPTR_0008s21190 (11)	scaffold_8:15400038-15400088(-) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215951.1.S1_at	A	A1TS	POPTR_0008s22700	POPTR_0008s22700 (11)	scaffold_8:17403259-17404073(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215952.1.S1_at	A	A1MS	POPTR_0816s00210	POPTR_0816s00210 (11)	scaffold_816:7242-7971(-) (11)	NA	O23470	GDSL esterase/lipase At4g16230	AT4G16230.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g19670.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g137420.1	hypothetical protein 	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.215953.1.S1_at	A	A1MS	POPTR_0008s22680	POPTR_0008s22680 (9)	scaffold_8:17363307-17363671(-) (9)	NA	O23470	GDSL esterase/lipase At4g16230	AT2G23540.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g19670.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g137420.1	hypothetical protein 	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.215954.1.S1_at	A	A1MS	POPTR_0008s22660	POPTR_0008s22660 (10)	scaffold_8:17331714-17333165(+) (10)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr8g139200.1	DIRP; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215955.1.S1_at	A	A1TS	POPTR_0008s22640	POPTR_0008s22640 (11)	scaffold_8:17304830-17307283(+) (11)	NA	Q8T277	5'-AMP-activated protein kinase subunit gamma	AT1G09020.1	homolog of yeast sucrose nonfermenting 4 	LOC_Os03g63940.1	"CBS domain containing membrane protein, putative, expressed"	Medtr8g139190.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215956.1.S1_at	A	A1TS	POPTR_0008s22620	POPTR_0008s22620 (11)	scaffold_8:17291573-17292160(+) (11)	NA	Q8VYH0	Pentatricopeptide repeat-containing protein At4g15720	AT4G15720.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g06650.1	"tetratricopeptide-like helical, putative, expressed"	Medtr8g139170.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215958.1.S1_at	A	A1MS	POPTR_0008s22600	POPTR_0008s22600 (10)	scaffold_8:17220169-17220858(-) (10)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT3G21420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g70930.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr5g067720.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215959.1.S1_at	A	A1TS	POPTR_0008s22530	POPTR_0008s22530 (11)	scaffold_8:17127488-17128496(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215960.1.S1_at	A	A1TS	POPTR_0008s22520	POPTR_0008s22520 (11)	scaffold_8:17103962-17104337(+) (11)	NA	O82248	Nuclear transcription factor Y subunit B-5	AT2G47810.1	"nuclear factor Y, subunit B5 "	LOC_Os01g70890.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g139040.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.215961.1.S1_at	A	A1TS	POPTR_0034s00200	POPTR_0034s00200 (11)	scaffold_34:86401-86876(+) (11)	NA	NA	NA	AT2G47820.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1). 	LOC_Os07g38080.2	"homeodomain-like, putative, expressed"	Medtr7g130200.1	"F7G19.9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215962.1.S1_at	A	A1TS	POPTR_0034s00230	POPTR_0034s00230 (10)	scaffold_34:125789-126312(+) (11)	NA	NA	NA	AT5G27650.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g05660.1	"PWWP domain containing protein, expressed"	Medtr7g138980.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215963.1.S1_s_at	A	A1TS	POPTR_0034s00240	POPTR_0034s00240 (11)	scaffold_34:134040-134347(+) (11)	NA	NA	NA	AT3G16510.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g27190.1	"C2 domain containing protein, putative, expressed"	Medtr8g138850.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215965.1.S1_at	A	A1TS	POPTR_0034s00260	POPTR_0034s00260 (10)	scaffold_34:145749-146227(+) (11)	NA	A4QND5	60S ribosome subunit biogenesis protein NIP7 homolog	AT4G15770.1	RNA binding 	LOC_Os07g47420.1	"60S ribosome subunit biogenesis protein NIP7, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215966.1.S1_at	A	A1TS	POPTR_0034s00320	POPTR_0034s00320 (11)	scaffold_34:201508-201930(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215967.1.S1_s_at	A	A1TS	POPTR_0005s23390	POPTR_0005s23390 (11)	scaffold_5:22170185-22170784(+) (11)	NA	Q9SPL5	Vicilin-like antimicrobial peptides 2-1	AT3G22640.1	cupin family protein 	LOC_Os03g46100.1	"cupin domain containing protein, expressed"	Medtr1g084050.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.215970.1.S1_at	A	A1TS	POPTR_0008s13800	POPTR_0008s13800 (11)	scaffold_8:9097243-9097478(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT4G35420.1	dihydroflavonol 4-reductase-like1 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr2g122390.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.215970.1.S1_s_at	A	A1TS	POPTR_0008s13800	POPTR_0008s13800 (11)	scaffold_8:9096718-9097580(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT4G35420.1	dihydroflavonol 4-reductase-like1 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr2g122390.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.215976.1.S1_at	A	A1TS	POPTR_0014s18950	POPTR_0014s18950 (11)	scaffold_14:16557899-16557977(-) (11)	NA	Q9SRT3	Probable xyloglucan glycosyltransferase 6	AT3G07330.1	Cellulose-synthase-like C6 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr8g012660.1	"Glycosyl transferase, family 2; Inorganic pyrophosphatase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215979.1.S1_at	A	A1TS	POPTR_0002s17770	POPTR_0002s17770 (10)	scaffold_2:13620286-13620636(-) (11)	NA	NA	NA	AT5G65960.1	GTP binding 	LOC_Os04g49530.1	expressed protein	Medtr8g087580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215980.1.S1_at	A	A1TS	POPTR_0397s00210	POPTR_0397s00210 (11)	scaffold_397:9413-10085(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215981.1.S1_at	A	A1TS	POPTR_0028s00410	POPTR_0028s00410 (11)	scaffold_28:198019-198144(+) (11)	NA	P0CC93	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr1g108390.1	NADH/Ubiquinone/plastoquinone (complex I) 	GO:0042773|ATP synthesis coupled electron transport	GO:0008137|NADH dehydrogenase (ubiquinone) activity	NA
PtpAffx.215987.1.S1_s_at	A	A2TS	POPTR_0005s02930	POPTR_0005s02930 (11)//POPTR_0005s02890 (9)	scaffold_5:1870035-1870390(-) (9)//scaffold_5:1895778-1896153(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215988.1.S1_at	A	A1MS	POPTR_0005s02870	POPTR_0005s02870 (11)	scaffold_5:1867170-1867205(-) (11)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr1g099580.1	DIRP; Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215989.1.S1_at	A	A1TS	POPTR_0005s02870	POPTR_0005s02870 (11)	scaffold_5:1856939-1858066(-) (11)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr1g099580.1	DIRP; Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215990.1.S1_at	A	A1TS	POPTR_0005s02840	POPTR_0005s02840 (11)	scaffold_5:1835600-1837003(+) (11)	NA	NA	NA	AT3G62900.1	CW-type Zinc Finger 	LOC_Os03g22580.2	"CW-type Zinc Finger, putative, expressed"	Medtr7g130060.1	hypothetical protein 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.215991.1.S1_at	A	A1TS	POPTR_0005s02830	POPTR_0005s02830 (9)	scaffold_5:1823228-1823578(+) (11)	NA	O80795	Probable inactive receptor-like protein kinase At1g65250	AT3G52530.1	Protein kinase superfamily protein 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215994.1.S1_at	A	A1TS	POPTR_0005s02750	POPTR_0005s02750 (11)	scaffold_5:1764833-1765079(+) (11)	NA	O04027	Nuclear transcription factor Y subunit B-4	AT1G09030.1	"nuclear factor Y, subunit B4 "	LOC_Os01g70890.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr1g099630.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.215995.1.S1_at	A	A1TS	POPTR_0005s02740	POPTR_0005s02740 (10)	scaffold_5:1751238-1751705(-) (10)	NA	NA	NA	AT1G09040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09050.1); Has 614 Blast hits to 567 proteins in 104 species: Archae - 2; Bacteria - 12; Metazoa - 344; Fungi - 31; Plants - 81; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). 	LOC_Os07g38080.2	"homeodomain-like, putative, expressed"	Medtr7g139010.1	"Homeodomain-like, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215996.1.S1_s_at	A	A1TS	POPTR_0005s02690	POPTR_0005s02690 (11)	scaffold_5:1712698-1713001(-) (11)	NA	NA	NA	AT5G27650.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g05660.1	"PWWP domain containing protein, expressed"	Medtr7g138980.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215997.1.S1_s_at	A	A1TS	POPTR_0005s02680	POPTR_0005s02680 (11)	scaffold_5:1709566-1709938(-) (11)	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr8g138850.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215998.1.S1_at	A	A1TS	POPTR_0005s02650	POPTR_0005s02650 (11)	scaffold_5:1699116-1700074(+) (11)	NA	Q9FT69	ATP-dependent DNA helicase Q-like SIM	AT5G27680.1	RECQ helicase SIM 	LOC_Os05g05810.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g099760.1	"Helicase, C-terminal "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.215999.1.S1_at	A	A1TS	POPTR_0005s02640	POPTR_0005s02640 (11)	scaffold_5:1687784-1688252(+) (11)	NA	Q9MA60	Formin-like protein 11	AT3G05470.1	Actin-binding FH2 (formin homology 2) family protein 	LOC_Os08g33430.1	"formin, putative, expressed"	Medtr1g099780.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216000.1.S1_at	A	A1TS	POPTR_0005s02630	POPTR_0005s02630 (11)	scaffold_5:1671923-1672591(-) (11)	NA	Q948T9	Respiratory burst oxidase homolog protein B	AT1G09090.2	respiratory burst oxidase homolog B 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr7g138940.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.216001.1.S1_at	A	A1TS	POPTR_0005s02600	POPTR_0005s02600 (11)	scaffold_5:1656827-1657907(-) (11)	NA	NA	NA	AT3G05480.1	cell cycle checkpoint control protein family 	NA	NA	Medtr7g138910.1	Rad9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216002.1.S1_at	A	A1TS	POPTR_0005s02560	POPTR_0005s02560 (11)	scaffold_5:1637173-1639308(-) (11)	NA	NA	NA	AT5G27710.1	unknown protein; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os07g47570.1	expressed protein	Medtr7g138470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216003.1.S1_at	A	A1TS	POPTR_0005s02550	POPTR_0005s02550 (11)	scaffold_5:1631102-1632068(-) (11)	NA	Q6IV77	Tafazzin	AT3G05510.1	Phospholipid/glycerol acyltransferase family protein 	LOC_Os01g70570.1	"acyltransferase, putative, expressed"	Medtr7g138490.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.216004.1.S1_at	A	A1TS	POPTR_0005s02540	POPTR_0005s02540 (11)	scaffold_5:1626111-1629065(-) (11)	NA	O82631	F-actin-capping protein subunit alpha	AT3G05520.1	Subunits of heterodimeric actin filament capping protein Capz superfamily 	LOC_Os07g23200.1	"F-actin-capping protein subunit alpha, putative, expressed"	Medtr7g138500.1	"F-actin capping protein, alpha subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216005.1.S1_at	A	A2TS	POPTR_0005s02500	POPTR_0005s02500 (11)//POPTR_0005s02510 (11)	scaffold_5:1591324-1602070(-) (11)//scaffold_5:1595008-1609030(-) (11)	POPTR_0005s02490 (8)	Q9LZB2	GDSL esterase/lipase At5g03980	AT5G03980.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g31940.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019010.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.216006.1.S1_at	A	A1TS	POPTR_0005s02480	POPTR_0005s02480 (11)	scaffold_5:1591226-1591853(-) (11)	NA	Q9LZB2	GDSL esterase/lipase At5g03980	AT5G03980.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g31940.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019010.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.216007.1.S1_at	A	A1TS	POPTR_0005s02420	POPTR_0005s02420 (11)	scaffold_5:1559060-1559794(-) (11)	NA	Q9LZB2	GDSL esterase/lipase At5g03980	AT5G03980.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g31940.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019010.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.216008.1.S1_at	A	A1TS	POPTR_0005s02370	POPTR_0005s02370 (11)	scaffold_5:1532029-1533831(+) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT3G16690.1	Nodulin MtN3 family protein 	LOC_Os03g22200.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g150940.2	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216009.1.S1_at	A	A1TS	POPTR_0005s02310	POPTR_0005s02310 (11)	scaffold_5:1504701-1505735(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.216010.1.S1_s_at	A	A3TS	POPTR_0005s02290	POPTR_0005s02290 (11)//POPTR_0005s02300 (11)//POPTR_0005s02280 (10)	scaffold_5:1491362-1495781(-) (11)//scaffold_5:1495271-1503603(-) (11)//scaffold_5:1503093-1503681(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.216013.1.S1_at	A	A1TS	POPTR_0005s02260	POPTR_0005s02260 (11)	scaffold_5:1481644-1482180(+) (11)	NA	Q8GX86	Probable pectinesterase/pectinesterase inhibitor 21	AT3G05610.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os03g18860.1	"pectinesterase, putative, expressed"	Medtr7g138410.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.216014.1.S1_at	A	A1TS	POPTR_0005s02250	POPTR_0005s02250 (11)	scaffold_5:1477869-1478415(+) (11)	NA	Q8RXK7	Probable pectinesterase/pectinesterase inhibitor 41	AT4G02330.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g20980.1	"pectinesterase, putative, expressed"	Medtr1g108220.1	Pectinesterase; Plant invertase/pectin methylesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.216015.1.S1_at	A	A1TS	POPTR_0005s02230	POPTR_0005s02230 (11)	scaffold_5:1470791-1471858(+) (11)	NA	Q8RWU5	F-box/LRR-repeat protein 3	AT5G27920.1	F-box family protein 	LOC_Os12g36670.1	"F-box/LRR-repeat protein 3, putative, expressed"	Medtr7g138390.1	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.216021.1.S1_s_at	A	A1TS	POPTR_0005s02190	POPTR_0005s02190 (11)	scaffold_5:1449551-1449866(+) (11)	NA	O80494	F-box protein PP2-B15	AT1G09155.1	phloem protein 2-B15 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr7g138350.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216022.1.S1_x_at	A	A1TS	POPTR_0005s02190	POPTR_0005s02190 (11)	scaffold_5:1448765-1448976(+) (11)	NA	O80494	F-box protein PP2-B15	AT1G09155.1	phloem protein 2-B15 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr7g138350.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216023.1.S1_at	A	A1TS	POPTR_0005s02150	POPTR_0005s02150 (9)	scaffold_5:1409731-1411019(-) (11)	NA	Q4FK66	Pre-mRNA-splicing factor 38A	AT2G40650.1	PRP38 family protein 	LOC_Os09g01630.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr1g100230.1	PRP38 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216024.1.S1_at	A	A1TS	POPTR_0005s02140	POPTR_0005s02140 (11)	scaffold_5:1406133-1406653(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216025.1.S1_at	A	A1TS	POPTR_0005s02120	POPTR_0005s02120 (11)	scaffold_5:1391938-1392430(-) (11)	NA	Q9LZM4	Wall-associated receptor kinase-like 20	AT5G02070.1	Protein kinase family protein 	LOC_Os05g25390.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr7g138230.1	"Putative wall-associated receptor kinase-like 20 precursor, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216026.1.S1_at	A	A1TS	POPTR_0005s02060	POPTR_0005s02060 (11)	scaffold_5:1336572-1336616(+) (11)	NA	Q6GHH1	DNA polymerase III polC-type	AT5G26940.4	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os03g18940.1	"exonuclease, putative, expressed"	Medtr7g138210.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216027.1.S1_at	A	A1TS	POPTR_0005s02000	POPTR_0005s02000 (11)	scaffold_5:1299499-1300809(-) (11)	NA	Q9ZN70	Exopolyphosphatase	AT1G09195.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Ppx/GppA phosphatase (InterPro:IPR003695). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216028.1.S1_at	A	A1TS	POPTR_0005s01990	POPTR_0005s01990 (11)	scaffold_5:1291368-1292334(-) (11)	NA	Q8N9H8	Probable exonuclease mut-7 homolog	AT1G56310.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os05g28860.1	"3'-5' exonuclease, putative, expressed"	Medtr1g100330.1	"Polynucleotidyl transferase, Ribonuclease H fold "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.216029.1.S1_s_at	A	A1TS	POPTR_0005s01980	POPTR_0005s01980 (11)	scaffold_5:1288889-1289125(-) (11)	NA	NA	NA	AT3G05725.1	Protein of unknown function (DUF3511) 	NA	NA	Medtr1g107520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216031.1.S1_at	A	A1TS	POPTR_0005s01960	POPTR_0005s01960 (11)	scaffold_5:1276117-1276660(-) (11)	NA	NA	NA	AT5G26910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1); Has 1322 Blast hits to 684 proteins in 162 species: Archae - 4; Bacteria - 497; Metazoa - 157; Fungi - 101; Plants - 155; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink). 	LOC_Os03g19080.3	expressed protein	Medtr2g038920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216032.1.S1_at	A	A1TS	POPTR_0005s01950	POPTR_0005s01950 (11)	scaffold_5:1267810-1268391(-) (11)	NA	NA	NA	AT3G62630.1	Protein of unknown function (DUF1645) 	LOC_Os03g19090.1	expressed protein	Medtr1g100380.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216033.1.S1_at	A	A1TS	POPTR_0005s01940	POPTR_0005s01940 (11)	scaffold_5:1260827-1261062(+) (11)	NA	Q9LRZ0	Topless-related protein 2	AT3G16830.1	TOPLESS-related 2 	LOC_Os01g15020.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr7g138250.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216034.1.S1_at	A	A1TS	POPTR_0005s01930	POPTR_0005s01930 (11)	scaffold_5:1255545-1258235(-) (11)	NA	O80488	Pentatricopeptide repeat-containing protein At1g09190	AT1G09190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g36350.1	"pentatricopeptide, putative, expressed"	Medtr1g100400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216037.1.S1_at	A	A1TS	POPTR_0005s01860	POPTR_0005s01860 (10)	scaffold_5:1233802-1234543(-) (10)	NA	Q8LGG8	Universal stress protein A-like protein	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.216038.1.S1_at	A	A1TS	POPTR_0005s01800	POPTR_0005s01800 (10)	scaffold_5:1212204-1212784(+) (11)	NA	O64477	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	AT2G19130.1	S-locus lectin protein kinase family protein 	LOC_Os01g66610.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g103080.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.216040.1.S1_s_at	A	A2TS	POPTR_0005s01770	POPTR_0005s01770 (11)//POPTR_0107s00210 (11)	scaffold_107:6711-7475(+) (11)//scaffold_5:1192441-1193212(+) (11)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os09g04160.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216041.1.S1_at	A	A1TS	POPTR_0005s01710	POPTR_0005s01710 (11)	scaffold_5:1139021-1140647(+) (11)	NA	Q9H6T3	RNA polymerase II-associated protein 3	AT1G56440.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g03910.1	"RNA polymerase II-associated protein 3, putative, expressed"	Medtr4g154900.1	Amidase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216041.1.S1_x_at	A	A1TS	POPTR_0005s01710	POPTR_0005s01710 (11)	scaffold_5:1139021-1141328(+) (11)	NA	Q9H6T3	RNA polymerase II-associated protein 3	AT1G56440.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g03910.1	"RNA polymerase II-associated protein 3, putative, expressed"	Medtr4g154900.1	Amidase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216042.1.S1_at	A	A1TS	POPTR_0005s01690	POPTR_0005s01690 (11)	scaffold_5:1129948-1130242(+) (11)	NA	NA	NA	AT1G74180.1	receptor like protein 14 	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.216043.1.S1_s_at	A	A2TS	POPTR_0005s01660	POPTR_0005s01660 (11)//POPTR_0056s00260 (11)	scaffold_5:1110873-1111680(+) (11)//scaffold_56:88805-89609(+) (11)	NA	P24397	Hyoscyamine 6-dioxygenase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os07g07410.2	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.216044.1.S1_at	A	A2TS	POPTR_0005s01660	POPTR_0005s01660 (11)//POPTR_0056s00260 (11)	scaffold_5:1111819-1112286(+) (11)//scaffold_56:89748-90213(+) (11)	NA	P24397	Hyoscyamine 6-dioxygenase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os07g07410.2	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.216045.1.S1_at	A	A1TS	POPTR_0056s00250	POPTR_0056s00250 (11)	scaffold_56:82076-82615(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216045.1.S1_x_at	A	A1TS	POPTR_0056s00250	POPTR_0056s00250 (11)	scaffold_56:82076-82615(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216049.1.S1_at	A	A1TS	POPTR_0473s00210	POPTR_0473s00210 (11)	scaffold_473:7288-7484(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216055.1.S1_at	A	A2TS	POPTR_0006s28390	POPTR_0006s28390 (11)//POPTR_0157s00220 (9)	scaffold_157:14325-14422(-) (9)//scaffold_6:26086732-26086829(+) (11)//scaffold_6:26102892-26102989(+) (9)//scaffold_6:26119258-26119355(+) (9)//scaffold_6:26131932-26138692(+) (11)//scaffold_6:26158188-26158285(+) (10)//scaffold_6:26186465-26186562(+) (9)	NA	O04660	Glutamate receptor 2.1	AT5G27100.1	glutamate receptor 2.1 	NA	NA	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216055.1.S1_x_at	A	A1TS	POPTR_0006s28390	POPTR_0006s28390 (11)	scaffold_6:26086542-26086828(+) (11)//scaffold_6:26131742-26138675(+) (11)//scaffold_6:26158188-26158284(+) (9)	POPTR_0157s00220 (6)	O04660	Glutamate receptor 2.1	AT5G27100.1	glutamate receptor 2.1 	NA	NA	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216062.1.S1_at	A	A1TS	POPTR_0014s00740	POPTR_0014s00740 (11)	scaffold_14:702917-703163(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216063.1.S1_s_at	A	A2TS	POPTR_0016s03330	POPTR_0311s00195 (11)//POPTR_0016s03330 (11)	scaffold_16:1730734-1731261(-) (11)//scaffold_311:29874-30401(-) (11)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.216068.1.S1_s_at	A	A1TS	POPTR_0001s43700	POPTR_0001s43700 (11)	scaffold_1:44007343-44007850(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.216079.1.S1_at	A	A1TS	POPTR_0001s42170	POPTR_0001s42170 (10)	scaffold_1:41922509-41925412(+) (10)	NA	NA	NA	AT2G36740.1	sequence-specific DNA binding transcription factors;DNA binding;DNA binding 	LOC_Os08g09320.1	"YL1 nuclear protein C-terminal domain containing protein, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.216082.1.S1_s_at	A	A2TS	POPTR_0001s42120	POPTR_0016s01265 (11)//POPTR_0001s42120 (11)	scaffold_1:41887820-41887869(+) (11)//scaffold_16:534554-534603(-) (11)	NA	NA	NA	AT5G21990.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g06710.1	"tetratricopeptide repeat, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216085.1.S1_at	A	A1TS	POPTR_0001s42000	POPTR_0001s42000 (10)	scaffold_1:41753317-41753618(+) (10)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011200.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216086.1.S1_at	A	A1TS	POPTR_0001s41950	POPTR_0001s41950 (11)	scaffold_1:41717110-41717892(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g095640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216088.1.S1_at	A	A1TS	POPTR_0001s41940	POPTR_0001s41940 (11)	scaffold_1:41692974-41694210(+) (11)	NA	NA	NA	AT5G08240.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23160.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216089.1.S1_at	A	A1TS	POPTR_0001s41920	POPTR_0001s41920 (11)	scaffold_1:41668575-41669153(+) (11)	NA	O49608	Transcription factor MYB32	AT4G21440.1	MYB-like 102 	LOC_Os07g37210.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216091.1.S1_at	A	A1TS	POPTR_0001s41860	POPTR_0001s41860 (11)	scaffold_1:41583788-41583986(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216092.1.S1_at	A	A1TS	POPTR_0001s41850	POPTR_0001s41850 (9)	scaffold_1:41574283-41574439(+) (11)	NA	NA	NA	AT5G54240.1	Protein of unknown function (DUF1223) 	LOC_Os07g37310.1	"uncharacterized secreted protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216093.1.S1_at	A	A1TS	POPTR_0001s41820	POPTR_0001s41820 (11)	scaffold_1:41541639-41542771(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216094.1.S1_at	A	A2TS	POPTR_2170s00200	POPTR_2170s00200 (11)//POPTR_0001s41810 (10)	scaffold_1:41510325-41510712(+) (10)//scaffold_2170:607-994(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216094.1.S1_s_at	A	A2TS	POPTR_0001s41810	POPTR_2170s00200 (11)//POPTR_0001s41810 (11)	scaffold_1:41510287-41510649(+) (11)//scaffold_2170:670-1032(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216095.1.S1_at	A	A1TS	POPTR_0001s41800	POPTR_0001s41800 (11)	scaffold_1:41494219-41496162(-) (11)	NA	Q9XGM2	Double-strand break repair protein MRE11	AT5G54260.1	DNA repair and meiosis protein (Mre11) 	LOC_Os04g54340.1	"double-strand break repair protein MRE11, putative, expressed"	Medtr2g095420.1	DNA repair exonuclease 	GO:0006302|double-strand break repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030145|manganese ion binding||GO:0004519|endonuclease activity	GO:0005634|nucleus
PtpAffx.216096.1.S1_a_at	A	A1TS	POPTR_0001s41790	POPTR_0001s41790 (11)	scaffold_1:41492065-41492163(+) (11)//scaffold_1:41492260-41492358(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216096.1.S1_at	A	A1TS	POPTR_0001s41790	POPTR_0001s41790 (11)	scaffold_1:41491647-41492110(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216097.1.S1_at	A	A1TS	POPTR_0001s41770	POPTR_0001s41770 (11)	scaffold_1:41483481-41484660(+) (11)	NA	P54697	Myosin-J heavy chain	AT5G54280.2	myosin 2 	LOC_Os07g37560.1	"myosin-Vb, putative, expressed"	Medtr2g095370.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.216098.1.S1_at	A	A1MS	POPTR_0001s41770	POPTR_0001s41770 (11)	scaffold_1:41472611-41473067(+) (11)	NA	P54697	Myosin-J heavy chain	AT5G54280.2	myosin 2 	LOC_Os07g37560.1	"myosin-Vb, putative, expressed"	Medtr2g095370.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.216098.1.S1_s_at	A	A1TS	POPTR_0001s41770	POPTR_0001s41770 (11)	scaffold_1:41472643-41472829(+) (11)	NA	P54697	Myosin-J heavy chain	AT5G54280.2	myosin 2 	LOC_Os07g37560.1	"myosin-Vb, putative, expressed"	Medtr2g095370.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.216099.1.S1_at	A	A1TS	POPTR_0001s41670	POPTR_0001s41670 (11)	scaffold_1:41373323-41373803(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003677|DNA binding	NA
PtpAffx.216100.1.S1_at	A	A1TS	POPTR_0001s41660	POPTR_0001s41660 (11)	scaffold_1:41368594-41369943(+) (11)	NA	NA	NA	AT4G27390.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g42280.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216101.1.S1_at	A	A1TS	POPTR_0001s41650	POPTR_0001s41650 (11)	scaffold_1:41360478-41361836(+) (11)	NA	Q54WM0	Transmembrane protein 184 homolog DDB_G0279555	AT4G21570.1	Protein of unknown function (DUF300) 	LOC_Os07g32230.1	"domain of unknown function domain containing protein, expressed"	Medtr2g014110.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216102.1.S1_at	A	A1TS	POPTR_0001s41640	POPTR_0001s41640 (10)	scaffold_1:41354999-41355550(-) (11)	NA	NA	NA	AT5G54370.1	Late embryogenesis abundant (LEA) protein-related 	LOC_Os11g05360.1	"RCLEA9 - Root cap and Late embryogenesis related family protein precursor, putative"	Medtr4g081510.1	Root cap 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216103.1.S1_at	A	A1TS	POPTR_0001s41630	POPTR_0001s41630 (11)	scaffold_1:41353945-41354468(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g50710.1	"pathogenesis-related Bet v I family protein, putative"	Medtr3g076170.1	Bet v I allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216104.1.S1_at	A	A1TS	POPTR_0001s41620	POPTR_0001s41620 (11)	scaffold_1:41348340-41348513(+) (11)	NA	Q9LK35	Receptor-like protein kinase THESEUS 1	AT5G54380.1	protein kinase family protein 	LOC_Os03g55210.1	"TKL_IRAK_CrRLK1L-1.1 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g040400.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216104.1.S1_s_at	A	A2TS	POPTR_0001s41620	POPTR_0011s12550 (11)//POPTR_0001s41620 (11)	scaffold_1:41348420-41348871(+) (11)//scaffold_11:15291521-15291972(+) (11)	NA	Q9LK35	Receptor-like protein kinase THESEUS 1	AT5G54380.1	protein kinase family protein 	LOC_Os03g55210.1	"TKL_IRAK_CrRLK1L-1.1 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g040400.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216106.1.S1_at	A	A1TS	POPTR_0007s03050	POPTR_0007s03050 (11)	scaffold_7:1762845-1763514(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216108.1.S1_s_at	A	A1TS	POPTR_0046s00280	POPTR_0046s00280 (11)	scaffold_12:2533722-2533771(+) (9)//scaffold_46:41024-41079(+) (11)//scaffold_46:95106-95161(+) (11)	NA	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216108.1.S1_x_at	A	A1TS	POPTR_0046s00280	POPTR_0046s00280 (11)	scaffold_46:91526-95160(+) (11)	NA	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216110.1.S1_at	A	A1TS	POPTR_0564s00200	POPTR_0564s00200 (11)	scaffold_564:1864-2301(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216111.1.S1_s_at	A	A3TS	POPTR_0006s18640	POPTR_0006s18660 (11)//POPTR_0006s18640 (11)//POPTR_0006s18680 (11)	scaffold_6:17208245-17208676(-) (11)//scaffold_6:17228699-17229132(-) (11)//scaffold_6:17247117-17247549(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216112.1.S1_at	A	A1TS	POPTR_0001s23890	POPTR_0001s23890 (11)	scaffold_1:23267591-23267984(-) (11)	NA	Q9LKF9	Cleavage and polyadenylation specificity factor subunit 2	AT5G23880.1	cleavage and polyadenylation specificity factor 100 	LOC_Os09g39590.1	"metallo-beta-lactamase, putative, expressed"	Medtr1g068100.1	Beta-lactamase-like; TAP42-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216112.1.S1_s_at	A	A1TS	POPTR_0001s23890	POPTR_0001s23890 (11)	scaffold_1:23267613-23267847(-) (11)	NA	Q9LKF9	Cleavage and polyadenylation specificity factor subunit 2	AT5G23880.1	cleavage and polyadenylation specificity factor 100 	LOC_Os09g39590.1	"metallo-beta-lactamase, putative, expressed"	Medtr1g068100.1	Beta-lactamase-like; TAP42-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216120.1.S1_s_at	A	A1TS	POPTR_0005s16660	POPTR_0005s16660 (11)	scaffold_5:13666170-13666510(-) (11)	NA	Q9SGZ5	Probable beta-D-xylosidase 7	AT1G78060.1	Glycosyl hydrolase family protein 	LOC_Os02g51620.1	"glycosyl hydrolase family 3 protein, putative, expressed"	CU651566_9.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal CU651566.9 51724-46198 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.216125.1.S1_at	A	A1TS	POPTR_0004s14420	POPTR_0004s14420 (11)	scaffold_4:14920578-14920759(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216126.1.S1_s_at	A	A1TS	POPTR_0004s14440	POPTR_0004s14440 (11)	scaffold_4:14949524-14949723(-) (11)	NA	Q9FGN8	Protein DYAD	AT5G23610.2	INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SWITCH1 (TAIR:AT5G51330.1); Has 173 Blast hits to 168 proteins in 34 species: Archae - 3; Bacteria - 10; Metazoa - 6; Fungi - 2; Plants - 115; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). 	LOC_Os03g44760.1	"SWI1, putative, expressed"	AC235756_28.1	"SWI1, related AC235756.1 180586-176312 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216128.1.S1_at	A	A1TS	POPTR_0004s14480	POPTR_0004s14480 (11)	scaffold_4:15042841-15043582(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216129.1.S1_s_at	A	A1TS	POPTR_0004s14470	POPTR_0004s14470 (11)	scaffold_4:15041651-15042087(+) (11)	NA	NA	NA	AT2G40980.1	Protein kinase superfamily protein 	LOC_Os02g29890.1	expressed protein	Medtr7g104330.1	"Tyrosine protein kinase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216130.1.S1_s_at	A	A1TS	POPTR_0004s14480	POPTR_0004s14480 (11)	scaffold_4:15043853-15044073(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216131.1.S1_at	A	A1TS	POPTR_0004s14490	POPTR_0004s14490 (11)	scaffold_4:15055789-15056922(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216132.1.S1_at	A	A1TS	POPTR_0004s14540	POPTR_0004s14540 (11)	scaffold_4:15144198-15146161(+) (11)	NA	Q7XQP4	Serine/threonine-protein kinase SAPK7	AT1G10940.1	Protein kinase superfamily protein 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g144500.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216133.1.S1_at	A	A1TS	POPTR_0004s14570	POPTR_0004s14570 (11)	scaffold_4:15162841-15163114(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216134.1.S1_at	A	A1TS	POPTR_0004s14600	POPTR_0004s14600 (11)	scaffold_4:15217517-15217915(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216135.1.S1_at	A	A1TS	POPTR_0004s14610	POPTR_0004s14610 (11)	scaffold_4:15220354-15221021(-) (11)	NA	Q54ST3	DDT domain-containing protein DDB_G0282237	AT5G08630.1	DDT domain-containing protein 	LOC_Os02g35100.2	"DDT domain containing protein, putative, expressed"	Medtr4g144400.1	DDT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216136.1.S1_at	A	A1TS	POPTR_0004s14640	POPTR_0004s14640 (11)	scaffold_4:15227328-15227451(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216136.1.S1_x_at	A	A1TS	POPTR_0004s14640	POPTR_0004s14640 (11)	scaffold_4:15227261-15227427(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216137.1.S1_at	A	A1TS	POPTR_0004s14660	POPTR_0004s14660 (11)	scaffold_4:15247174-15247619(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os09g28180.1	"D-mannose binding lectin family protein, expressed"	Medtr3g097890.1	Protein kinase; Curculin-like (mannose-binding) lectin; N/apple PAN 	NA	GO:0005529|sugar binding	NA
PtpAffx.216139.1.S1_at	A	A1TS	POPTR_0004s14700	POPTR_0004s14700 (11)	scaffold_4:15341600-15343157(+) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT1G21980.1	phosphatidylinositol-4-phosphate 5-kinase 1 	LOC_Os03g49800.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr5g064960.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.216140.1.S1_at	A	A1TS	POPTR_0004s14710	POPTR_0004s14710 (9)	scaffold_4:15364517-15364736(+) (9)	NA	NA	NA	NA	NA	LOC_Os03g49630.2	expressed protein	Medtr4g144340.1	Calponin-like actin-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216142.1.S1_at	A	A1TS	POPTR_0014s00270	POPTR_0014s00270 (11)	scaffold_14:90048-90147(-) (11)	NA	Q66JA8	Enhancer of polycomb homolog 2	AT1G79020.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os09g11270.1	"enhancer of polycomb, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216142.1.S1_s_at	A	A1TS	POPTR_0014s00270	POPTR_0014s00270 (11)	scaffold_14:90135-90802(-) (11)	NA	Q66JA8	Enhancer of polycomb homolog 2	AT1G79020.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os09g11270.1	"enhancer of polycomb, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216144.1.S1_at	A	A1TS	POPTR_0014s00300	POPTR_0014s00300 (9)	scaffold_14:116112-121827(+) (11)	NA	NA	NA	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os04g51970.2	"synaptic vesicle 2-related protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216145.1.S1_at	A	A1TS	POPTR_0014s00340	POPTR_0014s00340 (11)	scaffold_14:145359-146020(+) (11)	NA	Q6R2K1	Protein STRUBBELIG-RECEPTOR FAMILY 5	AT1G78980.1	STRUBBELIG-receptor family 5 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g163300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.216146.1.S1_s_at	A	A2TS	POPTR_0014s00380	POPTR_0014s00380 (11)//POPTR_0014s01200 (11)	scaffold_14:200928-201345(+) (11)//scaffold_14:384065-384482(+) (11)//scaffold_14:1175670-1176087(-) (11)	POPTR_0014s00480 (7)	Q9LPT1	Probably inactive leucine-rich repeat receptor-like protein kinase At1g50610	AT3G20190.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g45240.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g010280.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.216147.1.S1_s_at	A	A4TS	POPTR_0007s15230	POPTR_0007s15230 (11)//POPTR_0014s00490 (11)//POPTR_0014s01190 (10)//POPTR_0014s00650 (9)	scaffold_14:212379-212782(+) (11)//scaffold_14:390822-391224(+) (11)//scaffold_14:516415-516817(+) (11)//scaffold_14:604352-604751(+) (11)//scaffold_14:1166840-1167243(-) (11)//scaffold_7:14846284-14846687(+) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT1G16760.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os06g09230.2	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216149.1.S1_at	A	A1TS	POPTR_0014s00410	POPTR_0014s00410 (11)	scaffold_14:222565-223088(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216150.1.S1_at	A	A1TS	POPTR_0014s00610	POPTR_0014s00610 (11)	scaffold_14:556426-557059(+) (11)	NA	NA	NA	AT1G16770.1	unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g04780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216159.1.S1_s_at	A	A2TS	POPTR_0010s17980	POPTR_0010s17980 (11)//POPTR_0010s18000 (10)	scaffold_10:16391284-16391591(+) (11)//scaffold_10:16403486-16403793(+) (10)	NA	Q0WU02	Metal tolerance protein 10	AT1G16310.1	Cation efflux family protein 	LOC_Os01g03914.2	"cation efflux family protein, putative, expressed"	Medtr3g110280.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.216160.1.S1_s_at	A	A2TS	POPTR_0010s17990	POPTR_0010s17990 (11)//POPTR_0010s17970 (10)	scaffold_10:16384971-16385184(+) (10)//scaffold_10:16396304-16396720(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216168.1.S1_s_at	A	A1TS	POPTR_0014s11510	POPTR_0014s11510 (11)	scaffold_14:8544079-8544321(+) (11)	NA	Q8GXW1	DELLA protein RGL2	AT3G03450.1	RGA-like 2 	LOC_Os11g31100.1	"gibberellin response modulator protein, putative"	Medtr2g038340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216169.1.S1_s_at	A	A1TS	POPTR_0015s01430	POPTR_0015s01430 (11)	scaffold_15:873556-873949(-) (11)	NA	NA	NA	AT5G53020.1	Ribonuclease P protein subunit P38-related 	LOC_Os01g36970.1	expressed protein	Medtr3g123740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216175.1.S1_at	A	A1TS	POPTR_0018s03820	POPTR_0018s03820 (10)	scaffold_18:3269353-3269963(-) (10)	NA	NA	NA	AT4G16130.1	arabinose kinase 	LOC_Os02g04840.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr1g010200.1	"Glycoside hydrolase, family 10; Galactokinase, glycosyltransferase N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216180.1.S1_s_at	A	A1TS	POPTR_0004s24020	POPTR_0004s24020 (11)	scaffold_4:22684233-22684667(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.216188.1.S1_s_at	A	A1TS	POPTR_0011s10980	POPTR_0011s10980 (11)	scaffold_11:13680576-13680899(-) (11)	NA	Q9MAG8	Putative pentatricopeptide repeat-containing protein At1g53330	AT1G53330.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g11700.1	PPR repeat containing protein	Medtr8g068510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216189.1.S1_s_at	A	A2TS	POPTR_0016s00840	POPTR_0016s00840 (11)//POPTR_2131s00200 (11)	scaffold_16:314419-314517(-) (11)//scaffold_2131:2658-2756(-) (11)	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g14870.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150810.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.216190.1.S1_at	A	A1TS	POPTR_0016s00630	POPTR_0016s00630 (11)	scaffold_16:208904-209148(-) (11)	NA	Q9FG72	Oligopeptide transporter 1	AT5G55930.1	oligopeptide transporter 1 	LOC_Os08g38400.1	"oligopeptide transporter, putative, expressed"	Medtr7g110900.1	Ribosomal protein S2; Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216191.1.S1_at	A	A2TS	POPTR_0016s00620	POPTR_0016s00640 (11)//POPTR_0016s00620 (11)	scaffold_16:207948-208327(-) (11)//scaffold_16:213193-213575(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216192.1.S1_at	A	A1TS	POPTR_0016s00610	POPTR_0016s00610 (11)	scaffold_16:206841-207147(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216193.1.S1_at	A	A1TS	POPTR_0016s00600	POPTR_0016s00600 (11)	scaffold_16:206078-206579(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216194.1.S1_at	A	A1TS	POPTR_0016s00560	POPTR_0016s00560 (10)	scaffold_16:195708-196045(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216195.1.S1_at	A	A1TS	POPTR_0016s00550	POPTR_0016s00550 (11)	scaffold_16:187416-187787(-) (11)	NA	Q9ZVT9	C2 and GRAM domain-containing protein At1g03375	AT1G03370.1	C2 calcium/lipid-binding and GRAM domain containing protein 	LOC_Os06g19400.1	"GRAM and C2 domains containing protein, putative, expressed"	Medtr2g032960.1	C2; GRAM; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216196.1.S1_at	A	A1TS	POPTR_0016s00500	POPTR_0016s00500 (11)	scaffold_16:158986-159804(-) (11)	NA	Q9LPL3	Putative flavin-containing monooxygenase YUCCA11	AT1G21430.1	Flavin-binding monooxygenase family protein 	LOC_Os11g10170.1	"flavin monooxygenase, putative"	Medtr5g034600.1	"Monooxygenase, FAD-binding; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216197.1.S1_at	A	A1TS	POPTR_0016s00480	POPTR_0016s00480 (11)	scaffold_16:154325-154822(-) (11)	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55800.1	Domain of unknown function (DUF2431) 	LOC_Os09g30210.1	expressed protein	Medtr2g033120.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216198.1.S1_at	A	A1TS	POPTR_0016s00440	POPTR_0016s00440 (11)	scaffold_16:126047-126373(+) (11)	NA	NA	NA	AT4G05030.1	Copper transport protein family 	LOC_Os02g37280.1	"heavy metal transport/detoxification protein, putative"	Medtr2g033170.1	Heavy metal transport/detoxification protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216199.1.S1_at	A	A1TS	POPTR_0016s00410	POPTR_0016s00410 (11)	scaffold_16:105589-105967(-) (11)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os04g40520.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216202.1.S1_at	A	A1TS	POPTR_0016s00340	POPTR_0016s00340 (11)	scaffold_16:66823-67242(-) (11)	NA	Q9XIR4	"APO protein 1, chloroplastic"	AT1G64810.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os04g52520.1	"APO, putative, expressed"	Medtr6g070370.1	"Protein of unknown function DUF794, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216203.1.S1_at	A	A1TS	POPTR_0016s00300	POPTR_0016s00300 (9)	scaffold_16:42344-43227(+) (9)	NA	NA	NA	AT4G17150.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g40730.1	"protein with a conserved N-terminal region, putative, expressed"	Medtr2g033450.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216203.1.S1_s_at	A	A2TS	POPTR_0006s00280	POPTR_0016s00300 (11)//POPTR_0006s00280 (11)	scaffold_16:42120-43541(+) (11)//scaffold_6:57160-58483(+) (11)	NA	P54567	Uncharacterized protein yqkD	AT4G17150.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g40730.1	"protein with a conserved N-terminal region, putative, expressed"	Medtr2g033450.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216204.1.S1_at	A	A1TS	POPTR_0016s00290	POPTR_0016s00290 (11)	scaffold_16:36563-38444(+) (11)	NA	NA	NA	AT3G52155.1	Phosphoglycerate mutase family protein 	LOC_Os09g11510.1	"phosphoglycerate mutase, putative, expressed"	Medtr2g033540.1	Phosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216206.1.S1_at	A	A1TS	POPTR_0014s18310	POPTR_0014s18310 (11)	scaffold_14:15333937-15336375(-) (11)	NA	Q8BKN5	Gamma-tubulin complex component 5	AT1G80260.1	Spc97 / Spc98 family of spindle pole body (SBP) component 	LOC_Os12g41290.1	"Spc97 / Spc98 family protein, putative, expressed"	Medtr3g148350.1	Spc97/Spc98 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216207.1.S1_at	A	A1TS	POPTR_0014s18300	POPTR_0014s18300 (11)	scaffold_14:15297894-15298318(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216210.1.S1_at	A	A1TS	POPTR_0014s18220	POPTR_0014s18220 (11)	scaffold_14:15049783-15050791(+) (11)	NA	O49354	"Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial"	AT2G30920.1	coenzyme Q 3 	LOC_Os06g05900.1	"methyltransferase, putative, expressed"	Medtr5g099200.2	Ubiquinone biosynthesis O-methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216213.1.S1_s_at	A	A1TS	POPTR_0009s00200	POPTR_0009s00200 (11)	scaffold_10:4668209-4668323(-) (11)//scaffold_10:4668245-4668700(-) (11)//scaffold_10:4668317-4668736(-) (11)//scaffold_10:4668353-4677303(-) (10)//scaffold_9:58627-58794(+) (11)//scaffold_9:58699-58830(+) (11)//scaffold_9:58787-58907(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216214.1.S1_at	A	A1TS	POPTR_0014s18160	POPTR_0014s18160 (11)	scaffold_14:14868209-14868441(+) (11)	NA	P32518	Deoxyuridine 5'-triphosphate nucleotidohydrolase	AT3G46940.1	DUTP-PYROPHOSPHATASE-LIKE 1 	LOC_Os03g46640.1	"deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216217.1.S1_at	A	A1TS	POPTR_0001s32340	POPTR_0001s32340 (9)	scaffold_1:30711958-30712240(+) (10)	NA	NA	NA	AT4G20330.1	"Transcription initiation factor TFIIE, beta subunit "	LOC_Os10g25770.2	"transcription initiation factor IIE subunit beta, putative, expressed"	Medtr5g010780.2	"transcription initiation factor-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216225.1.S1_at	A	A1TS	POPTR_0006s16040	POPTR_0006s16040 (11)	scaffold_6:13854462-13854724(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21623.2.A1_a_at	A	A1TS	POPTR_0001s07280	POPTR_0001s07280 (11)	scaffold_1:5485808-5486051(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21623.2.A1_at	A	A1TS	POPTR_0001s07280	POPTR_0001s07280 (11)	scaffold_1:5484950-5486070(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216233.1.S1_x_at	A	A1TS	POPTR_0012s03215	POPTR_0012s03215 (11)	scaffold_11:8728533-8728762(-) (10)//scaffold_11:8803004-8803233(-) (10)//scaffold_11:8932184-8932370(-) (9)//scaffold_12:2545644-2546529(-) (11)//scaffold_1443:3112-3950(-) (10)//scaffold_262:24974-25323(-) (11)//scaffold_39:14223-15110(-) (11)//scaffold_39:83912-85950(-) (9)//scaffold_46:114680-114905(-) (10)//scaffold_726:4961-5189(+) (9)	NA	NA	NA	AT5G24490.1	"30S ribosomal protein, putative "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216235.1.S1_at	A	A1TS	POPTR_0009s10230	POPTR_0009s10230 (11)	scaffold_9:8841404-8841540(-) (11)	NA	Q6ZQ89	E3 ubiquitin-protein ligase MARCH6	AT4G34100.2	RING/U-box superfamily protein 	LOC_Os06g43210.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130230.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216235.1.S1_s_at	A	A1TS	POPTR_0009s10230	POPTR_0009s10230 (11)	scaffold_9:8841310-8842331(-) (11)	NA	Q6ZQ89	E3 ubiquitin-protein ligase MARCH6	AT4G34100.2	RING/U-box superfamily protein 	LOC_Os06g43210.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130230.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216240.1.S1_at	A	A2TS	POPTR_0001s13990	POPTR_0456s00200 (11)//POPTR_0001s13990 (11)	scaffold_1:11022277-11022723(+) (11)//scaffold_456:461-907(-) (11)	NA	O65012	Cytochrome P450 78A4	AT1G74110.1	"cytochrome P450, family 78, subfamily A, polypeptide 10 "	LOC_Os11g29720.1	"cytochrome P450, putative, expressed"	Medtr5g047920.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.216240.1.S1_s_at	A	A3TS	POPTR_0001s13990	POPTR_0456s00200 (11)//POPTR_0001s13990 (11)//POPTR_0003s17200 (11)	scaffold_1:11022209-11022333(+) (11)//scaffold_3:16644497-16644621(+) (11)//scaffold_456:851-975(-) (11)	NA	O65012	Cytochrome P450 78A4	AT1G74110.1	"cytochrome P450, family 78, subfamily A, polypeptide 10 "	LOC_Os11g29720.1	"cytochrome P450, putative, expressed"	Medtr5g047920.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.216240.1.S1_x_at	A	A2TS	POPTR_0001s13990	POPTR_0456s00200 (11)//POPTR_0001s13990 (11)	scaffold_1:11022144-11022720(+) (11)//scaffold_456:464-1040(-) (11)	NA	O65012	Cytochrome P450 78A4	AT1G74110.1	"cytochrome P450, family 78, subfamily A, polypeptide 10 "	LOC_Os11g29720.1	"cytochrome P450, putative, expressed"	Medtr5g047920.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.216245.1.S1_at	A	A1TS	POPTR_0017s09950	POPTR_0017s09950 (11)	scaffold_17:8729705-8730710(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216249.1.S1_at	A	A1TS	POPTR_0004s08540	POPTR_0004s08540 (11)	scaffold_4:7111354-7111916(-) (11)	NA	Q9JJW6	RNA and export factor-binding protein 2	AT5G37720.2	ALWAYS EARLY 4 	LOC_Os08g33120.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g087650.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.216251.1.S1_s_at	A	A1TS	POPTR_0001s06460	POPTR_0001s06460 (11)	scaffold_1:4976676-4977087(+) (11)	NA	NA	NA	AT2G40030.1	nuclear RNA polymerase D1B 	LOC_Os02g05880.1	"RNA polymerase Rpb1, domain 2 family protein, expressed"	Medtr8g042720.1	"Cell surface antigen; DNA-directed RNA polymerase, subunit A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216256.1.S1_s_at	A	A2TS	POPTR_0002s18370	POPTR_0002s18370 (11)//POPTR_0002s18390 (10)	scaffold_2:14331460-14331829(-) (11)//scaffold_2:14341158-14341527(-) (10)	NA	Q8VZE4	Pentatricopeptide repeat-containing protein At4g01570	AT4G01570.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g50500.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015060.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216257.1.S1_s_at	A	A2TS	POPTR_0002s18370	POPTR_0002s18370 (11)//POPTR_0002s18390 (11)	scaffold_2:14330504-14330886(-) (11)//scaffold_2:14340202-14340584(-) (11)	NA	Q8VZE4	Pentatricopeptide repeat-containing protein At4g01570	AT4G01570.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g50500.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015060.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216261.1.S1_at	A	A1TS	POPTR_0019s13780	POPTR_0019s13780 (11)	scaffold_19:14641977-14642366(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216262.1.S1_at	A	A4MS	POPTR_0019s03060	POPTR_0123s00200 (9)//POPTR_2061s00200 (9)//POPTR_0019s03060 (9)//POPTR_0019s03070 (9)	scaffold_123:951-983(+) (9)//scaffold_19:3083566-3083598(-) (9)//scaffold_19:3090723-3090755(+) (9)//scaffold_2061:558-590(-) (9)	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.216262.1.S1_s_at	A	A2TS	POPTR_2061s00200	POPTR_2061s00200 (11)//POPTR_0123s00200 (9)	scaffold_123:750-872(+) (9)//scaffold_19:3083677-3083799(-) (9)//scaffold_2061:669-791(-) (11)	POPTR_0019s03060 (7)//POPTR_0019s03070 (7)	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.216266.1.S1_s_at	A	A1TS	POPTR_0003s09320	POPTR_0003s09320 (11)	scaffold_3:10623050-10623191(-) (11)	NA	Q8LPK2	ABC transporter B family member 2	AT4G25960.1	P-glycoprotein 2 	LOC_Os02g46680.1	"multidrug resistance protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.216267.1.S1_s_at	A	A1TS	POPTR_0015s06650	POPTR_0015s06650 (11)	scaffold_15:7613554-7614533(-) (11)	NA	Q8ZKF6	Acetyl-coenzyme A synthetase	AT5G23050.1	acyl-activating enzyme 17 	LOC_Os09g21230.1	"AMP-binding enzyme, putative, expressed"	Medtr4g134030.1	"AMP-dependent synthetase and ligase; Legume lectin, alpha "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.216268.1.S1_at	A	A1MS	POPTR_0001s36190	POPTR_0001s36190 (11)	scaffold_1:34702704-34702775(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g016860.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.216268.1.S1_s_at	A	A1TS	POPTR_0001s36190	POPTR_0001s36190 (11)	scaffold_1:34702578-34702691(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g016860.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.216269.1.S1_at	A	A1TS	POPTR_1110s00200	POPTR_1110s00200 (11)	scaffold_1110:572-1238(+) (11)//scaffold_19:4484476-4485148(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216271.1.S1_at	A	A1MA	POPTR_0012s00260	POPTR_0012s00260 (11)	scaffold_12:41998-42303(+) (11)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216271.1.S1_s_at	A	A1MA	POPTR_0012s00260	POPTR_0012s00260 (11)	scaffold_12:41980-42279(+) (11)//scaffold_5:11413646-11413945(-) (11)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216278.1.S1_s_at	A	A2TS	POPTR_0011s00210	POPTR_0011s00210 (11)//POPTR_0011s01400 (11)	scaffold_11:30008-30095(+) (11)//scaffold_11:977809-977896(+) (11)//scaffold_11:987104-987191(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.21628.1.S1_at	A	A1TS	POPTR_0010s14580	POPTR_0010s14580 (11)	scaffold_10:14141187-14141583(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216280.1.S1_s_at	A	A1TS	POPTR_0004s07520	POPTR_0004s07520 (11)	scaffold_4:6192874-6193054(+) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr7g108380.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216281.1.S1_at	A	A2TS	POPTR_0004s07510	POPTR_0004s07510 (11)//POPTR_0004s07580 (9)	scaffold_4:6184385-6185320(-) (11)//scaffold_4:6228885-6229865(-) (9)	POPTR_0004s07590 (7)	Q00416	Helicase SEN1	AT1G65780.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g49270.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216285.1.S1_s_at	A	A1TS	POPTR_0014s03140	POPTR_0014s03140 (11)	scaffold_14:2540014-2541094(-) (11)	NA	NA	NA	AT5G44250.1	"Protein of unknown function DUF829, transmembrane 53 "	LOC_Os11g40070.1	expressed protein	Medtr3g148000.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216286.1.S1_s_at	A	A2TS	POPTR_0014s03130	POPTR_0014s03130 (11)//POPTR_0014s03120 (9)	scaffold_14:2527986-2533752(-) (11)//scaffold_14:2533628-2534359(-) (9)	NA	Q9FMZ4	B3 domain-containing protein At5g42700	AT5G42700.1	AP2/B3-like transcriptional factor family protein 	LOC_Os06g09420.1	"B3 DNA binding domain containing protein, expressed"	Medtr3g147970.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.216287.1.S1_s_at	A	A1TS	POPTR_0007s13090	POPTR_0007s13090 (11)	scaffold_7:13260439-13261134(+) (11)	NA	P40938	Replication factor C subunit 3	AT5G27740.1	ATPase family associated with various cellular activities (AAA)  	LOC_Os02g47605.1	expressed protein	Medtr5g020710.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.216288.1.S1_at	A	A1TS	POPTR_0011s17260	POPTR_0011s17260 (11)	scaffold_11:18852055-18852412(+) (11)	NA	Q9ZWC6	F-box protein At-B	AT1G55590.1	RNI-like superfamily protein 	LOC_Os08g39060.1	"F-box protein At-B, putative, expressed"	Medtr1g143330.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216289.1.S1_at	A	A1TS	POPTR_0011s17220	POPTR_0011s17220 (11)	scaffold_11:18812916-18815269(-) (11)	NA	P0CB21	Uncharacterized protein At4g26450	AT4G26450.1	unknown protein; Has 614 Blast hits to 492 proteins in 137 species: Archae - 0; Bacteria - 94; Metazoa - 255; Fungi - 76; Plants - 69; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216290.1.S1_at	A	A1TS	POPTR_0011s17190	POPTR_0011s17190 (11)	scaffold_11:18768213-18768741(+) (11)	NA	NA	NA	AT2G28200.1	C2H2-type zinc finger family protein 	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.216291.1.S1_at	A	A1TS	POPTR_0011s17160	POPTR_0011s17160 (11)	scaffold_11:18757545-18758024(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr3g016950.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216291.1.S1_s_at	A	A2TS	POPTR_0001s47580	POPTR_0011s17160 (11)//POPTR_0001s47580 (11)	scaffold_1:47716246-47716721(+) (11)//scaffold_11:18757528-18758002(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr3g016950.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216292.1.S1_at	A	A1TS	POPTR_0011s17130	POPTR_0011s17130 (11)	scaffold_11:18740678-18741509(+) (11)	NA	Q10137	Sec14 cytosolic factor	AT1G55690.3	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os08g25310.1	"phosphatidylinositol transfer, putative, expressed"	Medtr3g016810.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216293.1.S1_at	A	A1TS	POPTR_0011s17070	POPTR_0011s17070 (11)	scaffold_11:18696745-18699335(-) (11)	NA	Q5SSW2	Proteasome activator complex subunit 4	AT3G13330.1	proteasome activating protein 200 	LOC_Os06g19730.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216294.1.S1_at	A	A1TS	POPTR_0011s17060	POPTR_0011s17060 (11)	scaffold_11:18695192-18695684(+) (11)	NA	O49608	Transcription factor MYB32	AT5G56110.1	myb domain protein 103 	LOC_Os04g39470.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216295.1.S1_s_at	A	A1TS	POPTR_0011s17050	POPTR_0011s17050 (11)	scaffold_11:18693451-18693811(+) (11)	NA	Q9FF99	Probable amino acid permease 7	AT5G23810.1	amino acid permease 7 	LOC_Os04g39489.1	"amino acid transporter, putative, expressed"	CU013523_1.1	"Amino acid transporter, transmembrane CU013523.3 15682-12598 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216297.1.S1_at	A	A1TS	POPTR_0011s17030	POPTR_0011s17030 (11)	scaffold_11:18686109-18686693(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216298.1.S1_at	A	A1TS	POPTR_0011s17020	POPTR_0011s17020 (11)	scaffold_11:18683218-18683861(+) (11)	NA	Q38967	Amino acid permease 2	AT5G09220.1	amino acid permease 2 	LOC_Os04g39489.1	"amino acid transporter, putative, expressed"	CU013523_1.1	"Amino acid transporter, transmembrane CU013523.3 15682-12598 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216299.1.S1_at	A	A1TS	POPTR_0011s16980	POPTR_0011s16980 (9)	scaffold_11:18665867-18667704(+) (11)	NA	Q9FF99	Probable amino acid permease 7	AT5G23810.2	amino acid permease 7 	LOC_Os02g49060.1	"amino acid transporter, putative, expressed"	Medtr5g104470.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216301.1.S1_at	A	A1TS	POPTR_0011s16940	POPTR_0011s16940 (11)	scaffold_11:18652024-18652069(+) (11)	NA	Q84VX0	Probable galactinol--sucrose galactosyltransferase 1	AT1G55740.1	seed imbibition 1 	LOC_Os08g38710.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216301.1.S1_s_at	A	A1TS	POPTR_0011s16940	POPTR_0011s16940 (11)	scaffold_11:18651521-18652003(+) (11)	NA	Q84VX0	Probable galactinol--sucrose galactosyltransferase 1	AT1G55740.1	seed imbibition 1 	LOC_Os08g38710.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216302.1.S1_at	A	A1TS	POPTR_0221s00200	POPTR_0221s00200 (11)	scaffold_221:6450-6742(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216303.1.S1_s_at	A	A2TS	POPTR_0011s16860	POPTR_0221s00210 (11)//POPTR_0011s16860 (11)	scaffold_11:18600780-18601338(-) (11)//scaffold_221:12530-13088(+) (11)	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g56330.1	"TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216305.1.S1_at	A	A2TS	POPTR_0011s16850	POPTR_0011s16850 (11)//POPTR_0221s00220 (11)	scaffold_11:18596368-18596681(+) (11)//scaffold_221:23854-24167(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os06g06380.1	"NBS-LRR type disease resistance protein, putative, expressed"	Medtr3g015730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216306.1.S1_at	A	A1TS	POPTR_0011s16840	POPTR_0011s16840 (11)	scaffold_11:18585975-18587252(+) (11)	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30210.1	expressed protein	Medtr3g080330.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216307.1.S1_at	A	A1TS	POPTR_0011s16820	POPTR_0011s16820 (11)	scaffold_11:18582390-18582907(+) (11)	NA	Q84W65	"SufE-like protein, chloroplastic"	AT4G26500.1	chloroplast sulfur E 	LOC_Os09g09790.1	"Fe-S metabolism associated domain containing protein, expressed"	AC233100_36.1	BolA-like protein; Fe-S metabolism associated SufE AC233100.6 121683-123592 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216307.1.S1_x_at	A	A1TS	POPTR_0011s16820	POPTR_0011s16820 (11)	scaffold_11:18582324-18582907(+) (11)	NA	Q84W65	"SufE-like protein, chloroplastic"	AT4G26500.1	chloroplast sulfur E 	LOC_Os09g09790.1	"Fe-S metabolism associated domain containing protein, expressed"	AC233100_36.1	BolA-like protein; Fe-S metabolism associated SufE AC233100.6 121683-123592 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216308.1.S1_at	A	A1TS	POPTR_0011s16800	POPTR_0011s16800 (11)	scaffold_11:18577759-18578395(+) (11)	NA	O81635	Kinesin-4	AT3G44730.1	kinesin-like protein 1 	LOC_Os12g36100.1	"kinesin-4, putative, expressed"	Medtr3g080190.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.216309.1.S1_at	A	A1TS	POPTR_0011s16760	POPTR_0011s16760 (11)	scaffold_11:18529731-18530436(-) (11)	NA	C0LGR3	Probable LRR receptor-like serine/threonine-protein kinase At4g26540	AT5G56040.2	Leucine-rich receptor-like protein kinase family protein 	LOC_Os08g38560.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g080170.1	"Protein kinase; Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.216310.1.S1_at	A	A1TS	POPTR_0011s16730	POPTR_0011s16730 (11)	scaffold_11:18510186-18511385(+) (11)	NA	Q5BQN5	WPP domain-associated protein (Fragment)	AT2G34730.1	myosin heavy chain-related 	LOC_Os09g04810.1	"myosin heavy chain-related, putative, expressed"	Medtr2g129750.1	"WPP domain associated protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216312.1.S1_at	A	A1TS	POPTR_0011s16700	POPTR_0011s16700 (11)	scaffold_11:18484881-18485829(+) (11)	NA	Q4R4Z9	"Acyl-CoA synthetase family member 2, mitochondrial"	AT1G30520.1	acyl-activating enzyme 14 	LOC_Os08g03630.1	"acyl-activating enzyme 14, putative, expressed"	Medtr2g129710.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.216313.1.S1_at	A	A1TS	POPTR_0011s16660	POPTR_0011s16660 (11)	scaffold_11:18456279-18457199(-) (11)	NA	C0LGQ9	Probable LRR receptor-like serine/threonine-protein kinase At4g20940	AT4G20940.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g05190.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g129810.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.216314.1.S1_at	A	A1MS	POPTR_0011s16650	POPTR_0011s16650 (11)	scaffold_11:18448281-18449351(-) (11)	NA	Q32PY6	UPF0486 protein C1orf59 homolog	AT4G20910.2	double-stranded RNA binding protein-related / DsRBD protein-related 	LOC_Os07g06970.1	"HEN1, putative, expressed"	NA	NA	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.216315.1.S1_at	A	A1TS	POPTR_0011s16640	POPTR_0011s16640 (11)	scaffold_11:18444330-18445602(-) (11)	NA	NA	NA	AT4G20900.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g43040.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g129970.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216316.1.S1_at	A	A1TS	POPTR_0011s16500	POPTR_0011s16500 (11)	scaffold_11:18384671-18385244(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216317.1.S1_at	A	A1TS	POPTR_0011s16490	POPTR_0011s16490 (11)	scaffold_11:18383170-18383662(+) (11)	NA	Q6K5Q0	Putative germin-like protein 2-1	AT5G39190.1	germin-like protein 2 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr6g005300.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.216318.1.S1_at	A	A1MS	POPTR_0011s16480	POPTR_0011s16480 (11)	scaffold_11:18379136-18379342(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G11080.1	receptor like protein 35 	LOC_Os02g06210.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr7g008990.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.216319.1.S1_at	A	A1TS	POPTR_0011s16480	POPTR_0011s16480 (11)	scaffold_11:18378515-18378928(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G11080.1	receptor like protein 35 	LOC_Os02g06210.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr7g008990.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.216320.1.S1_at	A	A1TS	POPTR_0011s16450	POPTR_0011s16450 (11)	scaffold_11:18359431-18359813(-) (11)	NA	NA	NA	AT2G34780.2	maternal effect embryo arrest 22 	LOC_Os01g56290.1	expressed protein	AC147501_20.1	hypothetical protein AC147501.9 80184-71093 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.216321.1.S1_at	A	A1TS	POPTR_0011s16430	POPTR_0011s16430 (11)	scaffold_11:18356190-18356658(+) (11)	NA	NA	NA	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35560.1	"reticuline oxidase-like protein precursor, putative, expressed"	AC147501_16.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 52339-53928 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216322.1.S1_s_at	A	A2TS	POPTR_0019s04250	POPTR_0019s04250 (11)//POPTR_0019s04320 (11)	scaffold_19:4347768-4348060(-) (11)//scaffold_19:4410842-4411134(-) (11)	NA	Q9SFF9	Germin-like protein subfamily 1 member 7	AT3G05950.1	RmlC-like cupins superfamily protein 	LOC_Os08g08960.1	"Cupin domain containing protein, expressed"	Medtr6g005250.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.216323.1.S1_at	A	A1TS	POPTR_0011s16360	POPTR_0011s16360 (11)	scaffold_11:18297309-18297649(+) (11)	NA	P30986	Reticuline oxidase	AT5G44400.1	FAD-binding Berberine family protein 	LOC_Os06g35590.1	"reticuline oxidase-like protein precursor, putative, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216325.1.S1_s_at	A	A1TS	POPTR_0019s11290	POPTR_0019s11290 (11)	scaffold_19:12629438-12630439(-) (11)	NA	Q38869	Calcium-dependent protein kinase 4	AT4G09570.1	calcium-dependent protein kinase 4 	LOC_Os11g07040.1	"CAMK_CAMK_like.43 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g151880.1	Protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216332.1.S1_s_at	A	A1TS	POPTR_0012s08620	POPTR_0012s08620 (11)	scaffold_12:9726391-9726634(-) (11)	NA	NA	NA	AT3G26600.1	armadillo repeat only 4 	NA	NA	Medtr5g034510.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216333.1.S1_at	A	A1TS	POPTR_0015s12010	POPTR_0015s12010 (11)	scaffold_15:12454393-12454837(+) (11)	POPTR_0015s12020 (8)	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129900.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216341.1.S1_s_at	A	A2TS	POPTR_0009s11510	POPTR_0580s00200 (11)//POPTR_0009s11510 (11)	scaffold_580:4272-4704(-) (11)//scaffold_9:9545682-9546036(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os01g06520.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr5g093760.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.216342.1.S1_at	A	A1TS	POPTR_0013s09540	POPTR_0013s09540 (11)	scaffold_13:9302340-9302785(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216343.1.S1_at	A	A1TS	POPTR_0013s08950	POPTR_0013s08950 (11)	scaffold_13:8448492-8448528(-) (11)	NA	O31826	Putative acyl-CoA synthetase yngI	AT5G16340.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084090.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.216343.1.S1_x_at	A	A1TS	POPTR_0013s08950	POPTR_0013s08950 (11)	scaffold_13:8448419-8448672(-) (11)	NA	O31826	Putative acyl-CoA synthetase yngI	AT5G16340.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084090.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.216344.1.S1_at	A	A1MS	POPTR_0005s01610	POPTR_0005s01610 (10)	scaffold_5:1056423-1057128(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74170.1	receptor like protein 13 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.216344.1.S1_x_at	A	A1MS	POPTR_0005s01610	POPTR_0005s01610 (10)	scaffold_5:1056423-1057127(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74170.1	receptor like protein 13 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.216348.1.S1_at	A	A1TS	POPTR_0006s29400	POPTR_0006s29400 (11)	scaffold_6:26771324-26774425(-) (11)	NA	Q1RIM1	DNA topoisomerase 1	AT4G31210.1	"DNA topoisomerase, type IA, core "	LOC_Os06g16980.2	"DNA topoisomerase I family protein, expressed"	Medtr1g010510.1	"DNA topoisomerase I, ATP-binding; TOPRIM; ; "	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003916|DNA topoisomerase activity	GO:0005694|chromosome
PtpAffx.216350.1.S1_at	A	A1TS	POPTR_0001s27080	POPTR_0001s27080 (11)	scaffold_1:26026330-26026527(+) (11)	NA	NA	NA	AT3G57450.1	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g52410.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216352.1.S1_at	A	A1TS	POPTR_0005s23700	POPTR_0005s23700 (11)	scaffold_5:22447048-22447218(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216355.1.S1_at	A	A1MS	POPTR_0018s01880	POPTR_0018s01880 (10)	scaffold_18:1695793-1696575(-) (10)	NA	NA	NA	AT4G32160.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr3g137530.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.216355.1.S1_s_at	A	A1TS	POPTR_0018s01880	POPTR_0018s01880 (11)	scaffold_18:1695996-1696407(-) (11)	NA	NA	NA	AT4G32160.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr3g137530.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.216356.1.S1_s_at	A	A2TS	POPTR_0004s23380	POPTR_0004s23380 (11)//POPTR_0952s00200 (11)	scaffold_4:22127555-22128305(+) (11)//scaffold_952:6300-7066(-) (11)	NA	P0C8Z7	GDSL esterase/lipase At1g28640	AT1G28640.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os11g31940.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019090.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.216357.1.S1_s_at	A	A2TS	POPTR_0004s23380	POPTR_0004s23380 (11)//POPTR_0952s00200 (11)	scaffold_4:22126246-22126798(+) (11)//scaffold_952:4-8159(-) (11)	NA	P0C8Z7	GDSL esterase/lipase At1g28640	AT1G28640.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os11g31940.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019090.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.216358.1.S1_s_at	A	A1TS	POPTR_0004s23390	POPTR_0004s23390 (11)	scaffold_4:22130652-22130903(-) (11)	NA	P52420	"Phosphoribosylamine--glycine ligase, chloroplastic"	AT1G09830.1	Glycinamide ribonucleotide (GAR) synthetase 	LOC_Os08g09210.2	"phosphoribosylamine--glycine ligase, putative, expressed"	Medtr5g025340.1	Phosphoribosylglycinamide synthetase; ; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009113|purine base biosynthetic process	GO:0004637|phosphoribosylamine-glycine ligase activity	NA
PtpAffx.216359.1.S1_at	A	A1TS	POPTR_0013s13650	POPTR_0013s13650 (11)	scaffold_13:14076156-14076678(-) (11)	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35750.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216360.1.S1_at	A	A1TS	POPTR_0013s13640	POPTR_0013s13640 (10)	scaffold_13:14071298-14071948(+) (10)	NA	NA	NA	AT4G14480.1	Protein kinase superfamily protein 	LOC_Os03g47470.1	"STE_PAK_Ste20_STLK.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr2g121220.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216361.1.S1_at	A	A1TS	POPTR_0013s13630	POPTR_0013s13630 (11)	scaffold_13:14069235-14069874(-) (11)	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr1g106520.1	Asparaginase/glutaminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216362.1.S1_at	A	A1TS	POPTR_0013s13620	POPTR_0013s13620 (11)	scaffold_13:14065399-14065967(-) (11)	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35760.2	"pentatricopeptide, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216363.1.S1_at	A	A1TS	POPTR_0013s13610	POPTR_0013s13610 (11)	scaffold_13:14062218-14062816(-) (11)	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216364.1.S1_at	A	A1TS	POPTR_0013s13600	POPTR_0013s13600 (11)	scaffold_13:14057420-14058531(-) (11)	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35760.2	"pentatricopeptide, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216365.1.S1_at	A	A1TS	POPTR_0013s13590	POPTR_0013s13590 (11)	scaffold_13:14055226-14055972(-) (11)	NA	Q43492	Serpin-Z7	AT1G47710.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41419.1	"serpin domain containing protein, putative, expressed"	Medtr7g047230.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216367.1.S1_at	A	A1TS	POPTR_0013s13550	POPTR_0013s13550 (11)	scaffold_13:13995138-13996163(-) (11)	NA	B3GS44	GPI-anchored protein LORELEI	AT5G56170.1	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 	LOC_Os02g48980.1	"GPI-anchored protein, putative, expressed"	Medtr3g016820.1	"GPI-anchored protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216368.1.S1_at	A	A1TS	POPTR_0013s13470	POPTR_0013s13470 (11)	scaffold_13:13929497-13932373(-) (11)	NA	Q94KI8	Two pore calcium channel protein 1	AT4G03560.1	two-pore  channel 1 	LOC_Os01g48680.2	"two pore calcium channel protein 1, putative, expressed"	NA	NA	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.216369.1.S1_at	A	A1TS	POPTR_0013s13450	POPTR_0013s13450 (11)	scaffold_13:13926937-13927074(-) (11)	NA	A2WW87	Transcription factor GAMYB	AT4G26930.1	myb domain protein 97 	LOC_Os01g59660.4	"MYB family transcription factor, putative, expressed"	Medtr3g068970.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216371.1.S1_at	A	A1TS	POPTR_0013s13410	POPTR_0013s13410 (11)	scaffold_13:13896004-13896549(+) (11)	NA	NA	NA	AT1G10880.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	NA	NA	Medtr8g146890.1	"proton pump interactor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216372.1.S1_at	A	A1TS	POPTR_0013s13380	POPTR_0013s13380 (11)	scaffold_13:13874853-13875044(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216373.1.S1_at	A	A1TS	POPTR_0013s13370	POPTR_0013s13370 (11)	scaffold_13:13872864-13873262(+) (11)	NA	NA	NA	AT1G53035.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216374.1.S1_at	A	A1MS	POPTR_0013s13330	POPTR_0013s13330 (10)	scaffold_13:13838645-13839203(+) (10)	NA	Q9FIB2	Putative pentatricopeptide repeat-containing protein At5g09950	AT5G09950.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g40720.1	"pentatricopeptide, putative"	Medtr8g118960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216375.1.S1_s_at	A	A2TS	POPTR_0013s13270	POPTR_0013s13310 (11)//POPTR_0013s13270 (11)	scaffold_13:13803692-13804056(-) (11)//scaffold_13:13824876-13825240(-) (11)	POPTR_0013s13330 (7)	Q9FIB2	Putative pentatricopeptide repeat-containing protein At5g09950	AT5G09950.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g40720.1	"pentatricopeptide, putative"	Medtr8g118960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216376.1.S1_at	A	A1TS	POPTR_0013s13250	POPTR_0013s13250 (11)	scaffold_13:13786230-13786281(-) (11)	NA	Q9Y5Q9	General transcription factor 3C polypeptide 3	AT1G17680.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os11g16540.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr4g101240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216377.1.S1_at	A	A1TS	POPTR_0013s13210	POPTR_0013s13210 (11)	scaffold_13:13771952-13772024(+) (11)	NA	Q7Z9H9	Uncharacterized protein C1093.03	AT3G59770.1	sacI homology domain-containing protein / WW domain-containing protein 	LOC_Os01g25330.3	"SAC9, putative, expressed"	Medtr4g128320.1	"WW/Rsp5/WWP; Synaptojanin, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.216378.1.S1_at	A	A1TS	POPTR_0013s13210	POPTR_0013s13210 (10)	scaffold_13:13762886-13765003(+) (11)	NA	Q7Z9H9	Uncharacterized protein C1093.03	AT3G59770.1	sacI homology domain-containing protein / WW domain-containing protein 	LOC_Os01g25330.3	"SAC9, putative, expressed"	Medtr4g128320.1	"WW/Rsp5/WWP; Synaptojanin, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.216379.1.S1_at	A	A1TS	POPTR_0013s13210	POPTR_0013s13210 (11)	scaffold_13:13759847-13760214(+) (11)	NA	Q7Z9H9	Uncharacterized protein C1093.03	AT3G59770.1	sacI homology domain-containing protein / WW domain-containing protein 	LOC_Os01g25330.3	"SAC9, putative, expressed"	Medtr4g128320.1	"WW/Rsp5/WWP; Synaptojanin, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.21638.2.A1_at	A	A1MS	POPTR_0005s19160	POPTR_0005s19160 (10)	scaffold_5:17772738-17773252(+) (10)	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G38100.1	unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g11400.1	expressed protein	Medtr5g033900.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216380.1.S1_at	A	A1MS	POPTR_0013s13200	POPTR_0013s13200 (9)	scaffold_13:13753409-13753824(-) (9)	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT3G59780.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g67120.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g105210.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216380.1.S1_s_at	A	A1MS	POPTR_0013s13200	POPTR_0013s13200 (11)	scaffold_13:13753425-13753923(-) (11)	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT3G59780.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g67120.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g105210.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216381.1.S1_at	A	A1TS	POPTR_0013s13200	POPTR_0013s13200 (11)	scaffold_13:13746251-13746320(-) (11)	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT3G59780.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g67120.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g105210.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216382.1.S1_at	A	A1TS	POPTR_0013s13180	POPTR_0013s13180 (11)	scaffold_13:13738493-13740262(+) (11)	NA	Q5H8A6	Ion channel CASTOR	AT5G49960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g62650.1	"ion channel DMI1-like, chloroplast precursor, putative, expressed"	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216384.1.S1_at	A	A1TS	POPTR_0013s13140	POPTR_0013s13140 (11)	scaffold_13:13706358-13708406(-) (11)	NA	A4UHT7	Salutaridine reductase	AT3G59710.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g39490.1	"carbonyl reductase 3, putative, expressed"	Medtr1g034550.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.216385.1.S1_at	A	A1TS	POPTR_0013s13130	POPTR_0013s13130 (11)	scaffold_13:13702702-13703390(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216387.1.S1_s_at	A	A1TS	POPTR_0013s13070	POPTR_0013s13070 (11)	scaffold_13:13633268-13635230(-) (11)	NA	Q9FGS8	C2 and GRAM domain-containing protein At5g50170	AT3G59660.1	C2 domain-containing protein / GRAM domain-containing protein 	LOC_Os09g34130.1	"GRAM domain containing protein, expressed"	Medtr4g128530.1	C2; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216388.1.S1_at	A	A1TS	POPTR_0013s13040	POPTR_0013s13040 (11)	scaffold_13:13604667-13605680(-) (11)	NA	NA	NA	AT5G60030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr1g020400.1	"AGAP002737-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216388.1.S1_s_at	A	A1TS	POPTR_0013s13040	POPTR_0013s13040 (11)	scaffold_13:13604510-13604672(-) (11)	NA	NA	NA	AT5G60030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr1g020400.1	"AGAP002737-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216388.1.S1_x_at	A	A1TS	POPTR_0013s13040	POPTR_0013s13040 (11)	scaffold_13:13604538-13605680(-) (11)	NA	NA	NA	AT5G60030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr1g020400.1	"AGAP002737-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216389.1.S1_at	A	A1TS	POPTR_0013s13020	POPTR_0013s13020 (11)	scaffold_13:13589930-13590231(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21639.1.S1_at	A	A1TS	POPTR_0018s01590	POPTR_0018s01590 (10)	scaffold_18:1488636-1488851(-) (10)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT4G32390.1	Nucleotide-sugar transporter family protein 	LOC_Os05g41480.2	"domain of unknown function, DUF250 domain containing protein, expressed"	Medtr3g136750.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216390.1.S1_at	A	A1TS	POPTR_0013s13010	POPTR_0013s13010 (11)	scaffold_13:13588124-13588298(+) (11)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os02g11020.1	"cytochrome P450 72A1, putative, expressed"	Medtr1g127040.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216393.1.S1_at	A	A1TS	POPTR_0013s12930	POPTR_0013s12930 (11)	scaffold_13:13536875-13537001(-) (11)	NA	Q04957	DNA polymerase I	AT3G52050.4	5'-3' exonuclease family protein 	LOC_Os03g12610.1	"DNA polymerase I, putative, expressed"	Medtr4g128630.1	5-3 exonuclease 	NA	GO:0008409|5'-3' exonuclease activity||GO:0003677|DNA binding	NA
PtpAffx.216394.1.S1_at	A	A1TS	POPTR_0013s12920	POPTR_0013s12920 (9)	scaffold_13:13530317-13532303(+) (10)	NA	NA	NA	NA	NA	LOC_Os01g66980.1	expressed protein	Medtr4g092770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216395.1.S1_at	A	A1TS	POPTR_0013s12860	POPTR_0013s12860 (11)	scaffold_13:13487083-13488523(-) (11)	NA	Q9CAU1	Serine carboxypeptidase-like 3	AT1G73280.1	serine carboxypeptidase-like 3 	LOC_Os10g01110.1	"OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g022160.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.216395.1.S1_x_at	A	A1TS	POPTR_0013s12860	POPTR_0013s12860 (11)	scaffold_13:13487083-13488523(-) (11)	NA	Q9CAU1	Serine carboxypeptidase-like 3	AT1G73280.1	serine carboxypeptidase-like 3 	LOC_Os10g01110.1	"OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g022160.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.216396.1.S1_at	A	A1TS	POPTR_0013s12840	POPTR_0013s12840 (11)	scaffold_13:13479064-13480462(-) (11)	NA	Q9C7D6	Serine carboxypeptidase-like 17	AT3G12203.1	serine carboxypeptidase-like 17 	LOC_Os10g01110.1	"OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g022190.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.216397.1.S1_at	A	A1TS	POPTR_0013s12830	POPTR_0013s12830 (11)	scaffold_13:13477686-13477790(+) (11)	NA	Q6TKS7	Interferon-induced GTP-binding protein Mx	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.216397.1.S1_s_at	A	A1TS	POPTR_0013s12830	POPTR_0013s12830 (11)	scaffold_13:13477672-13478264(+) (11)	NA	Q6TKS7	Interferon-induced GTP-binding protein Mx	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.216398.1.S1_at	A	A1TS	POPTR_0013s12820	POPTR_0013s12820 (11)	scaffold_13:13472872-13473397(-) (11)	NA	Q9LFN8	Glutamate receptor 2.6	AT5G11180.1	glutamate receptor 2.6 	LOC_Os09g25980.1	"glutamate receptor 2.6 precursor, putative"	Medtr2g018680.1	Ionotropic glutamate receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216399.1.S1_at	A	A1TS	POPTR_0013s12810	POPTR_0013s12810 (10)	scaffold_13:13469267-13470178(+) (10)	NA	Q6S4P4	Transcription factor RF2b	AT3G58120.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g55150.1	"bZIP transcription factor domain containing protein, expressed"	AC233675_20.1	Basic leucine zipper AC233675.1 92514-95337 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.216400.1.S1_at	A	A1TS	POPTR_0013s12790	POPTR_0013s12790 (11)	scaffold_13:13458249-13458818(+) (11)	NA	Q9LNC0	Pentatricopeptide repeat-containing protein At1g06270	AT1G06270.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os08g21561.1	"PPR repeat domain containing protein, putative"	Medtr2g132420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216401.1.S1_at	A	A1TS	POPTR_0013s12780	POPTR_0013s12780 (11)	scaffold_13:13449569-13451291(+) (11)	NA	O08795	Glucosidase 2 subunit beta	AT2G42390.1	"protein kinase C substrate, heavy chain-related "	LOC_Os01g16970.2	"glucosidase II beta subunit-like domain containing protein, expressed"	AC233675_14.1	"Glucosidase 2 subunit beta precursor, related AC233675.1 72073-74269 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216402.1.S1_at	A	A1TS	POPTR_0013s12770	POPTR_0013s12770 (10)	scaffold_13:13446731-13447277(+) (10)	NA	Q9LNB9	LOB domain-containing protein 2	AT1G06280.1	LOB domain-containing protein 2 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr4g109260.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216403.1.S1_at	A	A1TS	POPTR_0013s12760	POPTR_0013s12760 (11)	scaffold_13:13439696-13439948(-) (11)	NA	Q40220	Rac-like GTP-binding protein RAC2	AT5G45970.1	RAC-like 2 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr2g132410.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.216404.1.S1_s_at	A	A1TS	POPTR_0013s12750	POPTR_0013s12750 (11)	scaffold_13:13437884-13438378(-) (11)	NA	O25225	GTP-binding protein TypA/BipA homolog	AT2G31060.2	elongation factor family protein 	LOC_Os01g54910.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.216405.1.S1_at	A	A1TS	POPTR_0013s12720	POPTR_0013s12720 (11)	scaffold_13:13401058-13401359(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216406.1.S1_at	A	A1TS	POPTR_0013s12710	POPTR_0013s12710 (11)	scaffold_13:13398350-13398945(-) (11)	NA	Q9FLT4	ABC transporter A family member 10	AT5G61740.1	ABC2 homolog 14 	LOC_Os02g11960.1	"ABC transporter, ATP-binding protein, putative"	Medtr8g112400.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.216407.1.S1_at	A	A1TS	POPTR_0013s12700	POPTR_0013s12700 (11)	scaffold_13:13396885-13397179(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g109040.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216408.1.S1_at	A	A1TS	POPTR_0013s12690	POPTR_0013s12690 (11)	scaffold_13:13394116-13394968(+) (11)	NA	NA	NA	AT1G28520.2	vascular plant one zinc finger protein 	LOC_Os01g54930.1	"one zinc finger protein, putative, expressed"	Medtr4g109030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216409.1.S1_at	A	A1TS	POPTR_0013s12680	POPTR_0013s12680 (11)	scaffold_13:13384373-13385965(+) (11)	NA	Q9P7W0	OPA3-like protein	AT1G28510.1	Optic atrophy 3 protein (OPA3) 	LOC_Os02g20844.1	expressed protein	Medtr2g018330.1	Optic atrophy 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216411.1.S1_at	A	A1TS	POPTR_0191s00220	POPTR_0191s00220 (9)	scaffold_191:26904-27118(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216411.1.S1_x_at	A	A1TS	POPTR_0191s00220	POPTR_0191s00220 (9)	scaffold_191:26904-27661(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216413.1.S1_at	A	A1TS	POPTR_0019s09800	POPTR_0019s09800 (11)	scaffold_19:11406043-11406202(+) (11)//scaffold_19:11459488-11459630(+) (10)//scaffold_19:11488089-11488230(+) (10)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216414.1.S1_s_at	A	A1TS	POPTR_0019s09795	POPTR_0019s09795 (11)	scaffold_19:11402969-11403582(+) (11)//scaffold_19:11483734-11484347(+) (9)	POPTR_0019s09860 (6)	NA	NA	AT4G19470.1	Leucine-rich repeat (LRR) family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21642.3.S1_a_at	A	A4TS	POPTR_0019s01210	POPTR_0019s01210 (11)//POPTR_0019s03040 (11)//POPTR_0019s02950 (11)//POPTR_0019s01190 (10)	scaffold_19:915601-915709(-) (10)//scaffold_19:957402-957510(-) (11)//scaffold_19:2873611-2873719(+) (11)//scaffold_19:3032525-3032633(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.216421.1.S1_s_at	A	A1TS	POPTR_0005s14180	POPTR_0005s14180 (11)	scaffold_5:11288733-11288927(+) (11)	NA	O60188	U3 small nucleolar RNA-associated protein 6	AT4G28200.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). "	LOC_Os02g01350.1	expressed protein	Medtr8g147010.1	Ribosomal protein L29 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216435.1.S1_at	A	A1TS	POPTR_0393s00210	POPTR_0393s00210 (11)	scaffold_393:12466-12985(+) (11)	NA	Q83A83	Cystathionine beta-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.216441.1.S1_x_at	A	A1TS	POPTR_0008s18540	POPTR_0008s18540 (11)	scaffold_8:12505809-12505903(-) (11)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	NA	NA	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216452.1.S1_at	A	A1TS	POPTR_0014s18860	POPTR_0014s18860 (11)	scaffold_14:16358152-16358664(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216465.1.S1_s_at	A	A1TS	POPTR_0017s01960	POPTR_0017s01960 (11)	scaffold_17:1435796-1435940(-) (11)	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216470.1.S1_at	A	A1TS	POPTR_0016s03070	POPTR_0016s03070 (11)	scaffold_16:1540101-1540483(+) (11)	NA	Q0JNR2	Cysteine proteinase inhibitor 12	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.216470.1.S1_s_at	A	A1TS	POPTR_0016s03070	POPTR_0016s03070 (11)	scaffold_16:1540472-1540698(+) (11)	NA	Q0JNR2	Cysteine proteinase inhibitor 12	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.216471.1.S1_s_at	A	A1TS	POPTR_0016s03060	POPTR_0016s03060 (11)	scaffold_16:1534924-1536589(-) (11)	NA	Q940A2	Protein kinase and PP2C-like domain-containing protein	AT2G40860.1	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein 	LOC_Os01g36080.2	"protein phosphatase 2C containing protein, expressed"	Medtr1g068720.1	Tyrosine protein kinase; Protein phosphatase 2C-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216474.1.S1_at	A	A1MS	POPTR_0006s04070	POPTR_0006s04070 (9)	scaffold_6:2747565-2747983(+) (9)	POPTR_0006s04090 (6)	P0C897	Putative UPF0481 protein At3g02645	AT3G50160.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216474.1.S1_s_at	A	A2MS	POPTR_0006s04070	POPTR_0006s04090 (11)//POPTR_0006s04070 (11)	scaffold_6:2747408-2747881(+) (11)//scaffold_6:2757806-2758279(+) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G50160.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216483.1.S1_x_at	A	A2TS	POPTR_0011s01670	POPTR_0011s01670 (10)//POPTR_0011s01815 (9)	scaffold_11:1207029-1207106(+) (10)//scaffold_11:1246683-1246760(+) (10)//scaffold_11:1277914-1277991(+) (10)//scaffold_11:1320118-1320194(+) (9)//scaffold_11:1359322-1359399(+) (10)//scaffold_11:1423477-1423538(+) (9)//scaffold_18:2569803-2570020(-) (11)//scaffold_21:34779-34856(+) (10)//scaffold_266:22692-22769(+) (10)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr5g043910.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.216486.1.S1_x_at	A	A1TS	POPTR_0011s07850	POPTR_0011s07850 (11)	scaffold_11:8748943-8748987(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os12g12120.1	"verticillium wilt disease resistance protein precursor, putative, expressed"	Medtr5g072640.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.216490.1.S1_at	A	A1TS	POPTR_0018s07150	POPTR_0018s07150 (11)	scaffold_18:7337919-7338203(+) (11)	NA	Q6NY74	Replication protein A 70 kDa DNA-binding subunit	AT2G06510.1	replication protein A 1A 	LOC_Os02g53680.1	"RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr3g061820.1	"Replication factor-A protein 1, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.216491.1.S1_at	A	A1TS	POPTR_0018s07130	POPTR_0018s07130 (9)	scaffold_18:7318124-7319814(+) (10)	NA	NA	NA	AT5G35560.1	DENN (AEX-3) domain-containing protein 	LOC_Os02g53700.6	"DENN domain containing protein, expressed"	Medtr7g117470.1	DENN; uDENN 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216492.1.S1_at	A	A1TS	POPTR_0018s07100	POPTR_0018s07100 (11)	scaffold_18:7305557-7305755(+) (11)	NA	NA	NA	AT2G06010.1	OBP3-responsive gene 4 	LOC_Os04g36850.1	"ORG4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216492.1.S1_x_at	A	A1TS	POPTR_0018s07100	POPTR_0018s07100 (11)	scaffold_18:7304124-7305796(+) (11)	NA	NA	NA	AT2G06010.1	OBP3-responsive gene 4 	LOC_Os04g36850.1	"ORG4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216494.1.S1_at	A	A1MS	POPTR_0018s06990	POPTR_0018s06990 (10)	scaffold_18:7114343-7115089(+) (11)	NA	NA	NA	AT5G20120.1	unknown protein; Has 54 Blast hits to 54 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr8g119850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216495.1.S1_at	A	A1TS	POPTR_0018s06960	POPTR_0018s06960 (11)	scaffold_18:7067887-7068284(+) (11)	NA	Q9STR4	1-aminocyclopropane-1-carboxylate synthase 7	AT4G26200.1	1-amino-cyclopropane-1-carboxylate synthase 7 	LOC_Os05g10780.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr6g093330.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.216496.1.S1_at	A	A1TS	POPTR_0018s06910	POPTR_0018s06910 (11)	scaffold_18:7007907-7008412(+) (11)	NA	Q9SVP7	Pentatricopeptide repeat-containing protein At4g13650	AT4G13650.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g41650.1	"pentatricopeptide, putative, expressed"	Medtr8g118960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216498.1.S1_at	A	A1TS	POPTR_0018s06880	POPTR_0018s06880 (11)	scaffold_18:6952802-6957523(-) (11)	NA	Q9ZUP2	"DNA repair protein recA homolog 3, mitochondrial"	AT2G19490.1	recA DNA recombination family protein 	LOC_Os01g67510.1	"recA protein, putative, expressed"	Medtr2g046210.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216501.1.S1_at	A	A1TS	POPTR_0018s06760	POPTR_0018s06760 (11)	scaffold_18:6795465-6797870(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216502.1.S1_at	A	A1TS	POPTR_0018s06740	POPTR_0018s06740 (10)	scaffold_18:6776974-6778214(-) (10)	NA	Q8L7W2	Nudix hydrolase 8	AT5G47240.1	nudix hydrolase homolog 8 	LOC_Os04g46280.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g105240.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.216505.1.S1_at	A	A1TS	POPTR_0214s00220	POPTR_0214s00220 (11)	scaffold_214:33277-33497(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216507.1.S1_at	A	A1TS	POPTR_0019s04360	POPTR_0019s04360 (11)	scaffold_19:4466720-4467722(+) (11)	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216514.1.S1_at	A	A1MS	POPTR_0011s09540	POPTR_0011s09540 (10)	scaffold_11:11856546-11856672(-) (10)	NA	P38838	DNA damage response protein WSS1	AT1G55915.1	zinc ion binding 	LOC_Os06g09170.2	"zinc ion binding protein, putative, expressed"	Medtr4g028570.1	PUG 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.216514.1.S1_s_at	A	A1TS	POPTR_0011s09540	POPTR_0011s09540 (11)	scaffold_11:11856198-11856368(-) (11)	NA	P38838	DNA damage response protein WSS1	AT1G55915.1	zinc ion binding 	LOC_Os06g09170.2	"zinc ion binding protein, putative, expressed"	Medtr4g028570.1	PUG 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.216519.1.S1_s_at	A	A1TS	POPTR_0007s02230	POPTR_0007s02230 (9)	scaffold_7:1333678-1333815(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66980.1	suppressor of npr1-1 constitutive 4 	LOC_Os01g02360.1	"resistance-related receptor-like kinase, putative, expressed"	Medtr1g034780.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216520.1.S1_at	A	A1TS	POPTR_0007s02220	POPTR_0007s02220 (11)	scaffold_7:1331365-1331970(-) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	LOC_Os01g02400.1	"protein kinase domain containing protein, expressed"	Medtr1g034890.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216520.1.S1_x_at	A	A1TS	POPTR_0007s02220	POPTR_0007s02220 (11)	scaffold_7:1331365-1331970(-) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	LOC_Os01g02400.1	"protein kinase domain containing protein, expressed"	Medtr1g034890.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216521.1.S1_s_at	A	A1TS	POPTR_0007s02230	POPTR_0007s02230 (11)	scaffold_7:1333272-1333528(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66980.1	suppressor of npr1-1 constitutive 4 	LOC_Os01g02360.1	"resistance-related receptor-like kinase, putative, expressed"	Medtr1g034780.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216525.1.S1_at	A	A1TS	POPTR_0001s40250	POPTR_0001s40250 (11)	scaffold_1:39621753-39621843(+) (11)	NA	Q02909	"Phosphoenolpyruvate carboxylase, housekeeping isozyme"	AT3G14940.1	phosphoenolpyruvate carboxylase 3 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.216526.1.S1_at	A	A1TS	POPTR_0001s40260	POPTR_0001s40260 (11)	scaffold_1:39625239-39626422(+) (11)	NA	NA	NA	AT1G16900.1	Alg9-like mannosyltransferase family 	LOC_Os01g11070.1	"Alg9-like mannosyltransferase protein, putative, expressed"	Medtr2g092360.1	Alg9-like mannosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216527.1.S1_at	A	A1TS	POPTR_0001s40280	POPTR_0001s40280 (10)	scaffold_1:39641551-39642333(-) (10)	NA	Q7ZV60	Mitochondrial chaperone BCS1	AT3G50940.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr2g092750.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216528.1.S1_at	A	A1TS	POPTR_0001s40310	POPTR_0001s40310 (11)	scaffold_1:39671103-39671145(-) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT1G53300.1	tetratricopetide-repeat thioredoxin-like 1 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.216528.1.S1_x_at	A	A1TS	POPTR_0001s40310	POPTR_0001s40310 (11)	scaffold_1:39670413-39671145(-) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT1G53300.1	tetratricopetide-repeat thioredoxin-like 1 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.216529.1.S1_at	A	A1TS	POPTR_0001s40310	POPTR_0001s40310 (11)	scaffold_1:39673006-39673439(-) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT1G53300.1	tetratricopetide-repeat thioredoxin-like 1 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.216530.1.S1_at	A	A1MS	POPTR_0001s40350	POPTR_0001s40350 (10)	scaffold_1:39750744-39751658(+) (10)	NA	Q9DBE8	"Alpha-1,3-mannosyltransferase ALG2"	AT1G78800.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g49960.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr1g132850.1	"Glycosyl transferase, group 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216531.1.S1_at	A	A1TS	POPTR_0001s40360	POPTR_0001s40360 (11)	scaffold_1:39763598-39764167(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g135600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216532.1.S1_s_at	A	A1TS	POPTR_0001s40370	POPTR_0001s40370 (11)	scaffold_1:39783633-39785830(+) (11)	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT1G16670.1	Protein kinase superfamily protein 	LOC_Os02g06930.2	"protein kinase, putative, expressed"	Medtr2g077080.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216534.1.S1_at	A	A1TS	POPTR_0001s40380	POPTR_0001s40380 (11)	scaffold_1:39793538-39794129(-) (11)	NA	Q9MAH4	ABC transporter G family member 10	AT1G53270.1	ABC-2 type transporter family protein 	LOC_Os01g42900.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr8g122660.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.216535.1.S1_at	A	A1TS	POPTR_0001s40410	POPTR_0001s40410 (11)	scaffold_1:39808573-39809551(-) (11)	NA	NA	NA	AT1G53250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53800.1); Has 11909 Blast hits to 7704 proteins in 757 species: Archae - 51; Bacteria - 1338; Metazoa - 4550; Fungi - 987; Plants - 464; Viruses - 24; Other Eukaryotes - 4495 (source: NCBI BLink). 	LOC_Os10g12354.1	"endonuclease, putative, expressed"	NA	NA	NA	GO:0004519|endonuclease activity	NA
PtpAffx.216536.1.S1_at	A	A1TS	POPTR_0001s40420	POPTR_0001s40420 (11)	scaffold_1:39847118-39847496(+) (11)	NA	Q9LRR7	"9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic"	AT3G14440.1	nine-cis-epoxycarotenoid dioxygenase 3 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216537.1.S1_at	A	A1TS	POPTR_0001s40430	POPTR_0001s40430 (11)	scaffold_1:39878280-39878750(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216538.1.S1_at	A	A1TS	POPTR_0001s40470	POPTR_0001s40470 (11)	scaffold_1:39915057-39916277(-) (11)	NA	Q5R7A2	Chitobiosyldiphosphodolichol beta-mannosyltransferase	AT1G16570.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g08300.2	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr2g088500.1	"Glycosyl transferase, group 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216539.1.S1_at	A	A1TS	POPTR_0001s40490	POPTR_0001s40490 (10)	scaffold_1:39936034-39936918(+) (10)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT3G14410.1	Nucleotide/sugar transporter family protein 	LOC_Os08g04110.1	"transporter, putative, expressed"	Medtr7g133820.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216540.1.S1_at	A	A1TS	POPTR_0001s40500	POPTR_0001s40500 (11)	scaffold_1:39942688-39943952(+) (11)	NA	Q9FPS2	Ubiquitin carboxyl-terminal hydrolase 25	AT3G14400.1	ubiquitin-specific protease 25 	LOC_Os05g43480.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.216541.1.S1_at	A	A1TS	POPTR_0001s40520	POPTR_0001s40520 (11)	scaffold_1:39968744-39968956(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216547.1.S1_at	A	A1TS	POPTR_0014s00410	POPTR_0014s00410 (11)	scaffold_14:221783-221985(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216559.1.S1_at	A	A1TS	POPTR_0162s00310	POPTR_0162s00310 (10)	scaffold_162:48654-49006(-) (11)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216559.1.S1_s_at	A	A1TS	POPTR_0162s00310	POPTR_0162s00310 (11)	scaffold_162:48563-48661(-) (11)//scaffold_8:798111-798209(+) (11)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216560.1.S1_s_at	A	A1TS	POPTR_0008s01580	POPTR_0008s01580 (11)	scaffold_8:777401-777562(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216564.1.S1_s_at	A	A1TS	POPTR_0008s18370	POPTR_0008s18370 (11)	scaffold_8:12336754-12337353(+) (11)	NA	Q9FMY1	Cytochrome P450 86B1	AT1G24540.1	"cytochrome P450, family 86, subfamily C, polypeptide 1 "	LOC_Os02g38290.2	"cytochrome P450, putative, expressed"	Medtr4g101000.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.216566.1.S1_at	A	A1MS	POPTR_0006s28700	POPTR_0006s28700 (11)	scaffold_6:26309840-26309998(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216566.1.S1_x_at	A	A1MS	POPTR_0006s28700	POPTR_0006s28700 (11)	scaffold_6:26309643-26310050(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216568.1.S1_s_at	A	A2TS	POPTR_0006s28730	POPTR_0006s28740 (11)//POPTR_0006s28730 (11)	scaffold_6:26328250-26328560(-) (11)//scaffold_6:26337279-26337589(-) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os06g39070.1	"UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216570.1.S1_at	A	A1TS	POPTR_0006s28750	POPTR_0006s28750 (11)	scaffold_6:26350791-26351433(+) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G78570.1	rhamnose biosynthesis 1 	LOC_Os03g17000.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.216571.1.S1_at	A	A1TS	POPTR_0006s28770	POPTR_0006s28770 (11)	scaffold_6:26365202-26365672(+) (11)	NA	O54922	Exocyst complex component 7	AT4G31540.1	exocyst subunit exo70 family protein G1 	LOC_Os02g05620.1	"ATEXO70G1, putative, expressed"	Medtr1g010470.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.216571.1.S1_x_at	A	A1TS	POPTR_0006s28770	POPTR_0006s28770 (11)	scaffold_6:26365085-26365672(+) (11)	NA	O54922	Exocyst complex component 7	AT4G31540.1	exocyst subunit exo70 family protein G1 	LOC_Os02g05620.1	"ATEXO70G1, putative, expressed"	Medtr1g010470.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.216572.1.S1_at	A	A1TS	POPTR_0006s28800	POPTR_0006s28800 (11)	scaffold_6:26398616-26399493(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr3g005310.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216573.1.S1_at	A	A2TS	POPTR_0006s28830	POPTR_0006s28870 (11)//POPTR_0006s28830 (11)	scaffold_6:26412740-26413052(+) (11)//scaffold_6:26431520-26431832(+) (11)	NA	NA	NA	AT5G57510.1	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g128630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216575.1.S1_at	A	A1TS	POPTR_0006s28940	POPTR_0006s28940 (11)	scaffold_6:26458245-26458686(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g028420.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.216576.1.S1_at	A	A1TS	POPTR_0006s28950	POPTR_0006s28950 (11)	scaffold_6:26460872-26461287(-) (11)	NA	NA	NA	AT5G24880.1	BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g133310.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216577.1.S1_at	A	A1TS	POPTR_0006s28960	POPTR_0006s28960 (11)	scaffold_6:26471040-26472410(+) (11)	NA	Q6ZSG1	RING finger protein 165	AT5G24870.2	RING/U-box superfamily protein 	LOC_Os06g48040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g133350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216578.1.S1_at	A	A1TS	POPTR_0006s28970	POPTR_0006s28970 (11)	scaffold_6:26476358-26477213(-) (11)	NA	NA	NA	AT2G24530.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g56300.1	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216581.1.S1_at	A	A1TS	POPTR_0006s29040	POPTR_0006s29040 (11)	scaffold_6:26524175-26525273(-) (11)	NA	Q9Y450	HBS1-like protein	AT5G10630.2	Translation elongation factor EF1A/initiation factor IF2gamma family protein 	LOC_Os01g02720.2	"elongation factor Tu, putative, expressed"	Medtr4g136490.2	"Zinc finger, RanBP2-type; Translation factor; EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal "	NA	GO:0008270|zinc ion binding||GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0005622|intracellular
PtpAffx.216584.1.S1_at	A	A1TS	POPTR_0006s29090	POPTR_0006s29090 (11)	scaffold_6:26576282-26577041(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216585.1.S1_at	A	A1TS	POPTR_0006s29110	POPTR_0006s29110 (11)	scaffold_6:26588706-26589177(+) (11)	NA	Q9ZQ23	Fasciclin-like arabinogalactan protein 3	AT2G24450.1	FASCICLIN-like arabinogalactan protein 3 precursor 	LOC_Os02g26320.1	"fasciclin-like arabinogalactan precursor protein, putative, expressed"	AC233655_31.1	Beta-Ig-H3/fasciclin AC233655.2 194118-193165 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216586.1.S1_at	A	A1TS	POPTR_0006s29140	POPTR_0006s29140 (11)	scaffold_6:26600749-26601084(-) (11)	NA	Q9SVG9	Calcium-binding protein CML42	AT4G20780.1	calmodulin like 42 	LOC_Os03g21380.2	"OsCML27 - Calmodulin-related calcium sensor protein, expressed"	Medtr3g132850.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216587.1.S1_at	A	A1TS	POPTR_0006s29160	POPTR_0006s29160 (11)	scaffold_6:26620206-26620508(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216588.1.S1_at	A	A1TS	POPTR_0006s29180	POPTR_0006s29180 (11)	scaffold_6:26634016-26635312(-) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT2G24430.2	NAC domain containing protein 38 	LOC_Os09g32260.2	"no apical meristem protein, putative, expressed"	Medtr1g009870.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.216589.1.S1_at	A	A1TS	POPTR_0006s29230	POPTR_0006s29230 (11)	scaffold_6:26666449-26667837(-) (11)	NA	Q84KJ5	"Cryptochrome DASH, chloroplastic/mitochondrial"	AT5G24850.1	cryptochrome 3 	LOC_Os06g45100.1	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr3g133560.1	"DNA photolyase, FAD- binding N-terminal "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.216590.1.S1_at	A	A1TS	POPTR_0006s29240	POPTR_0006s29240 (11)	scaffold_6:26672695-26673078(-) (11)	NA	Q9FHN9	U-box domain-containing protein 31	AT5G65920.1	ARM repeat superfamily protein 	LOC_Os03g13010.1	"U-box domain containing protein, expressed"	Medtr5g015370.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.216592.1.S1_at	A	A1TS	POPTR_0006s29280	POPTR_0006s29280 (11)	scaffold_6:26705697-26706123(+) (11)	NA	P33082	Auxin-induced protein X15	AT2G24400.1	SAUR-like auxin-responsive protein family  	LOC_Os04g51890.1	"OsSAUR20 - Auxin-responsive SAUR gene family member, expressed"	Medtr1g010150.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216593.1.S1_at	A	A1TA	POPTR_0006s29290	POPTR_0006s29290 (9)	scaffold_6:26711387-26711962(+) (11)	NA	NA	NA	AT2G24395.1	chaperone protein dnaJ-related 	LOC_Os08g40919.2	expressed protein	Medtr3g133030.1	"chaperone protein dnaJ-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216594.1.S1_at	A	A1TS	POPTR_0006s29350	POPTR_0006s29350 (11)	scaffold_6:26743944-26744680(-) (11)	NA	NA	NA	AT2G21080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT3G20300.1); Has 141 Blast hits to 141 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os08g41000.1	"extracellular ligand-gated ion channel, putative, expressed"	Medtr1g010240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216595.1.S1_at	A	A1TS	POPTR_0006s29360	POPTR_0006s29360 (11)	scaffold_6:26749662-26749948(+) (11)	NA	C0LGR9	Probable LRR receptor-like serine/threonine-protein kinase At4g31250	AT4G31250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g45240.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g010280.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.216596.1.S1_at	A	A1TS	POPTR_0006s29370	POPTR_0006s29370 (11)	scaffold_6:26753011-26753456(+) (11)	NA	Q8VZQ0	Probable nucleoredoxin 3	AT4G31240.2	protein kinase C-like zinc finger protein 	LOC_Os04g51920.1	"protein disulfide isomerase, putative, expressed"	Medtr3g133070.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin domain 2; C1-like; Thioredoxin fold "	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.216597.1.S1_at	A	A1TS	POPTR_0006s29380	POPTR_0006s29380 (11)	scaffold_6:26757973-26758417(+) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT2G24370.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os06g09230.2	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216598.1.S1_s_at	A	A1TS	POPTR_0006s29460	POPTR_0006s29460 (11)	scaffold_6:26805036-26805322(-) (11)	NA	Q9M086	DDB1- and CUL4-associated factor homolog 1	AT4G31160.1	DDB1-CUL4 associated factor 1 	LOC_Os04g59460.1	expressed protein	Medtr3g135700.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216599.1.S1_at	A	A1TS	POPTR_0006s29500	POPTR_0006s29500 (11)	scaffold_6:26845502-26845968(-) (11)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT4G31140.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g04670.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.216600.1.S1_s_at	A	A1TS	POPTR_0006s29510	POPTR_0006s29510 (11)	scaffold_6:26852458-26852954(-) (11)	NA	NA	NA	AT3G53440.2	Homeodomain-like superfamily protein 	NA	NA	Medtr5g032270.1	"IMP dehydrogenase/GMP reductase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216601.1.S1_s_at	A	A1TS	POPTR_0006s29470	POPTR_0006s29470 (11)	scaffold_6:26826697-26826912(-) (11)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT4G31140.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g04670.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216603.1.S1_at	A	A1TS	POPTR_1981s00200	POPTR_1981s00200 (11)	scaffold_12:2884937-2885688(+) (11)//scaffold_1981:760-1514(+) (11)	POPTR_0012s03665 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216610.1.S1_s_at	A	A4TS	POPTR_0008s23060	POPTR_0008s23060 (11)//POPTR_0008s23070 (11)//POPTR_0008s23080 (11)//POPTR_0741s00200 (10)	scaffold_1538:3091-3293(-) (11)//scaffold_741:11036-11240(+) (11)//scaffold_8:18280044-18280248(-) (11)//scaffold_8:18288632-18288836(-) (11)//scaffold_8:18301531-18301735(-) (11)//scaffold_8:18314300-18314504(-) (11)	POPTR_0008s23050 (8)	O50001	Major allergen Pru ar 1	AT1G24020.2	MLP-like protein 423 	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.216616.1.S1_at	A	A1MS	POPTR_0004s05470	POPTR_0004s05470 (11)	scaffold_4:4223928-4224108(-) (11)	NA	Q94CD5	Ubiquitin-like modifier-activating enzyme atg7	AT5G45900.1	ThiF family protein 	LOC_Os01g42850.2	"ThiF family domain containing protein, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	NA
PtpAffx.216616.1.S1_s_at	A	A1TS	POPTR_0004s05470	POPTR_0004s05470 (11)	scaffold_4:4223957-4224064(-) (11)	NA	Q94CD5	Ubiquitin-like modifier-activating enzyme atg7	AT5G45900.1	ThiF family protein 	LOC_Os01g42850.2	"ThiF family domain containing protein, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	NA
PtpAffx.216617.1.S1_at	A	A1TS	POPTR_0012s10080	POPTR_0012s10080 (11)	scaffold_12:10933671-10933814(-) (11)	NA	NA	NA	AT5G14120.1	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216618.1.S1_s_at	A	A1TS	POPTR_0012s10060	POPTR_0012s10060 (11)	scaffold_12:10922867-10923441(-) (11)	NA	Q9QYI4	DnaJ homolog subfamily B member 12	AT5G53150.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os04g31940.1	"dnaJ domain containing protein, expressed"	Medtr3g124470.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.216621.1.S1_at	A	A1TS	POPTR_0001s23400	POPTR_0001s23400 (11)	scaffold_1:22749480-22751719(+) (11)	NA	C1DKY7	Siroheme synthase	AT5G40850.1	urophorphyrin methylase 1 	LOC_Os01g44050.1	"siroheme synthase, putative, expressed"	Medtr3g031440.1	Uroporphiryn-III C-methyltransferase; 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.216622.1.S1_at	A	A2TS	POPTR_0001s23480	POPTR_1045s00200 (11)//POPTR_0001s23480 (11)	scaffold_1:22892235-22892650(-) (11)//scaffold_1045:419-834(+) (11)	NA	P26205	Cyanogenic beta-glucosidase (Fragment)	AT5G44640.1	beta glucosidase 13 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216624.1.S1_at	A	A1TS	POPTR_0001s23500	POPTR_0001s23500 (11)	scaffold_1:22904677-22904902(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216625.1.S1_at	A	A1TS	POPTR_0001s23510	POPTR_0001s23510 (10)	scaffold_1:22906036-22906234(-) (10)	NA	Q5RF97	Box C/D snoRNA protein 1	AT1G04945.2	HIT-type Zinc finger family protein 	LOC_Os01g73150.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216626.1.S1_at	A	A1TS	POPTR_0001s23520	POPTR_0001s23520 (10)	scaffold_1:22912756-22913086(+) (11)	NA	Q86HW6	Probable serine/threonine-protein kinase DDB_G0276461	AT2G32850.2	Protein kinase superfamily protein 	LOC_Os02g37880.3	"cyclin G-associated kinase, putative, expressed"	Medtr8g115300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216627.1.S1_at	A	A1TS	POPTR_0001s23560	POPTR_0001s23560 (11)	scaffold_1:22959932-22960648(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT5G06800.2	myb-like HTH transcriptional regulator family protein 	LOC_Os04g56990.2	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g111700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216628.1.S1_at	A	A1TS	POPTR_0001s23570	POPTR_0001s23570 (11)	scaffold_1:22971102-22971461(+) (11)	NA	NA	NA	AT5G06800.1	myb-like HTH transcriptional regulator family protein 	LOC_Os04g56990.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g111700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216629.1.S1_at	A	A1TS	POPTR_0001s23580	POPTR_0001s23580 (11)	scaffold_1:22976965-22977152(-) (11)	NA	Q39224	Protein SRG1	AT3G21420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os10g40880.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr5g067830.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.216631.1.S1_at	A	A1TS	POPTR_0001s23590	POPTR_0001s23590 (10)	scaffold_1:22990404-22990760(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216632.1.S1_at	A	A1TS	POPTR_0001s23600	POPTR_0001s23600 (11)	scaffold_1:22991901-22992061(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216633.1.S1_x_at	A	A1TS	POPTR_0001s23610	POPTR_0001s23610 (11)	scaffold_1:22995447-22996471(+) (11)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.2	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216634.1.S1_at	A	A1TS	POPTR_0001s23620	POPTR_0001s23620 (10)	scaffold_1:23008480-23009650(+) (10)	NA	O81360	"Zeaxanthin epoxidase, chloroplastic"	AT5G67030.1	zeaxanthin epoxidase (ZEP) (ABA1) 	LOC_Os04g37619.1	"zeaxanthin epoxidase, chloroplast precursor, putative, expressed"	Medtr4g024040.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216637.1.S1_at	A	A1TS	POPTR_0001s23640	POPTR_0001s23640 (11)	scaffold_1:23028970-23029426(-) (11)	NA	NA	NA	AT2G44430.1	DNA-binding bromodomain-containing protein 	LOC_Os08g39980.1	"DNA-binding bromodomain-containing protein, putative, expressed"	Medtr2g071440.1	Myb transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216638.1.S1_at	A	A1TS	POPTR_0001s23650	POPTR_0001s23650 (10)	scaffold_1:23034887-23036439(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216639.1.S1_at	A	A1TS	POPTR_0001s23700	POPTR_0001s23700 (11)	scaffold_1:23096421-23096949(+) (11)	NA	NA	NA	AT2G28270.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g41930.1	"DC1 domain-containing protein, putative"	Medtr7g112030.1	C1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216640.1.S1_at	A	A1TS	POPTR_0001s23740	POPTR_0001s23740 (11)	scaffold_1:23128471-23128900(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216641.1.S1_at	A	A1TS	POPTR_0001s23750	POPTR_0001s23750 (11)	scaffold_1:23130930-23131163(+) (11)	NA	Q84TK1	Transcription factor bHLH10	AT2G31220.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	AC235671_17.1	Helix-loop-helix DNA-binding AC235671.2 74985-73151 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216643.1.S1_at	A	A1TS	POPTR_0001s23770	POPTR_0001s23770 (11)	scaffold_1:23169369-23169960(+) (11)	NA	Q8GX29	F-box/kelch-repeat protein SKIP25	AT1G31350.1	KAR-UP F-box 1 	LOC_Os06g49750.1	"kelch motif family protein, expressed"	Medtr5g026710.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216646.1.S1_at	A	A1TS	POPTR_0001s23830	POPTR_0001s23830 (11)	scaffold_1:23219131-23219549(-) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT4G25835.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g27340.1	"ATPase, putative"	Medtr8g128800.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.216647.1.S1_at	A	A1TS	POPTR_0001s23860	POPTR_0001s23860 (11)	scaffold_1:23242297-23243969(+) (11)	NA	Q6NUT3	Uncharacterized MFS-type transporter C19orf28	AT2G44280.2	Major facilitator superfamily protein 	LOC_Os07g39010.1	"lactose permease-related, putative, expressed"	Medtr2g080160.1	"C19orf28 protein, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216648.1.S1_at	A	A1TS	POPTR_0001s23880	POPTR_0001s23880 (11)	scaffold_1:23253674-23255111(-) (11)	NA	NA	NA	AT1G05577.1	Domain of unknown function (DUF966) 	LOC_Os01g57020.1	expressed protein	Medtr2g080190.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216649.1.S1_s_at	A	A2TS	POPTR_0001s23910	POPTR_0001s23930 (11)//POPTR_0001s23910 (11)	scaffold_1:23296104-23296699(+) (11)//scaffold_1:23317644-23318239(+) (11)	NA	P43077	Beta-hexosaminidase	AT1G05590.1	beta-hexosaminidase 2 	LOC_Os07g38790.1	"beta-hexosaminidase precursor, putative, expressed"	Medtr2g080430.1	"Glycoside hydrolase, family 20; ; "	GO:0005975|carbohydrate metabolic process	GO:0004563|beta-N-acetylhexosaminidase activity	NA
PtpAffx.216651.1.S1_at	A	A1TS	POPTR_0001s23930	POPTR_0001s23930 (11)	scaffold_1:23317900-23318334(+) (11)	POPTR_0001s23910 (7)	P43077	Beta-hexosaminidase	AT1G05590.1	beta-hexosaminidase 2 	LOC_Os07g38790.1	"beta-hexosaminidase precursor, putative, expressed"	Medtr2g080430.1	"Glycoside hydrolase, family 20; ; "	GO:0005975|carbohydrate metabolic process	GO:0004563|beta-N-acetylhexosaminidase activity	NA
PtpAffx.216652.1.S1_at	A	A1TS	POPTR_0001s23960	POPTR_0001s23960 (10)	scaffold_1:23341102-23342009(+) (11)	NA	P54697	Myosin-J heavy chain	AT2G31900.1	myosin-like protein XIF 	LOC_Os03g53660.1	"Myosin head domain containing protein, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.216653.1.S1_at	A	A1TS	POPTR_0001s23960	POPTR_0001s23960 (10)	scaffold_1:23342222-23342590(+) (10)	POPTR_0009s03030 (6)	P54697	Myosin-J heavy chain	AT2G31900.1	myosin-like protein XIF 	LOC_Os03g53660.1	"Myosin head domain containing protein, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.216654.1.S1_at	A	A1TS	POPTR_0001s23960	POPTR_0001s23960 (11)	scaffold_1:23342865-23344044(+) (11)	NA	P54697	Myosin-J heavy chain	AT2G31900.1	myosin-like protein XIF 	LOC_Os03g53660.1	"Myosin head domain containing protein, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.216655.1.S1_at	A	A1TS	POPTR_0001s23960	POPTR_0001s23960 (10)	scaffold_1:23347416-23348127(+) (11)	NA	P54697	Myosin-J heavy chain	AT2G31900.1	myosin-like protein XIF 	LOC_Os03g53660.1	"Myosin head domain containing protein, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.216656.1.S1_x_at	A	A1TS	POPTR_0001s23960	POPTR_0001s23960 (11)	scaffold_1:23349170-23349292(+) (11)	NA	P54697	Myosin-J heavy chain	AT2G31900.1	myosin-like protein XIF 	LOC_Os03g53660.1	"Myosin head domain containing protein, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.216657.1.S1_at	A	A1MS	POPTR_0001s23960	POPTR_0001s23960 (11)	scaffold_1:23351577-23351611(+) (11)	NA	P54697	Myosin-J heavy chain	AT2G31900.1	myosin-like protein XIF 	LOC_Os03g53660.1	"Myosin head domain containing protein, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.216658.1.S1_at	A	A1TS	POPTR_0001s23970	POPTR_0001s23970 (11)	scaffold_1:23354255-23354650(-) (11)	NA	P0C872	JmjC domain-containing protein 7	AT3G45880.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os09g31050.1	"cytosolic phospholipase A2 beta, putative, expressed"	Medtr5g025210.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216659.1.S1_at	A	A1TS	POPTR_0001s24010	POPTR_0001s24010 (11)	scaffold_1:23396172-23398009(-) (11)	NA	NA	NA	AT5G59990.1	CCT motif family protein 	LOC_Os01g61900.1	"CCT motif family protein, expressed"	Medtr2g114040.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216673.1.S1_at	A	A1TS	POPTR_0145s00210	POPTR_0145s00210 (11)	scaffold_145:19651-20061(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216673.1.S1_s_at	A	A1TS	POPTR_0145s00210	POPTR_0145s00210 (11)	scaffold_145:19758-20023(+) (11)//scaffold_145:38215-38454(+) (9)//scaffold_19:13023724-13023989(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216674.1.S1_at	A	A1TS	POPTR_0016s03240	POPTR_0016s03240 (11)	scaffold_16:1658349-1658625(-) (11)	NA	Q940D0	Two-component response regulator ARR1	AT3G10760.1	Homeodomain-like superfamily protein 	LOC_Os05g34110.1	"homeodomain-related, putative, expressed"	Medtr7g105990.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216674.1.S1_x_at	A	A1TS	POPTR_0016s03240	POPTR_0016s03240 (11)	scaffold_16:1658108-1658625(-) (11)	NA	Q940D0	Two-component response regulator ARR1	AT3G10760.1	Homeodomain-like superfamily protein 	LOC_Os05g34110.1	"homeodomain-related, putative, expressed"	Medtr7g105990.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216677.1.S1_at	A	A1TS	POPTR_0001s23000	POPTR_0001s23000 (11)	scaffold_1:22038247-22044439(+) (11)	NA	Q9ZVE0	Oligoribonuclease	AT2G26970.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g26660.2	"exonuclease, putative, expressed"	Medtr5g095430.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216677.1.S1_s_at	A	A1TS	POPTR_0001s23000	POPTR_0001s23000 (11)	scaffold_1:22038566-22043830(+) (11)	NA	Q9ZVE0	Oligoribonuclease	AT2G26970.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g26660.2	"exonuclease, putative, expressed"	Medtr5g095430.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216678.1.S1_at	A	A1TS	POPTR_0001s23010	POPTR_0001s23010 (11)	scaffold_1:22050467-22052810(-) (11)	NA	NA	NA	AT4G15010.2	Mitochondrial substrate carrier family protein 	LOC_Os04g44540.2	"mitochondrial carrier protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216683.1.S1_s_at	A	A5TS	POPTR_0013s06000	POPTR_0013s06000 (11)//POPTR_0013s06030 (11)//POPTR_1158s00200 (11)//POPTR_0013s06020 (11)//POPTR_0013s06010 (11)	scaffold_1158:3418-3565(+) (11)//scaffold_13:4407797-4407944(+) (11)//scaffold_13:4438745-4438892(+) (11)//scaffold_13:4443060-4443207(+) (11)//scaffold_13:4447372-4447519(+) (11)	NA	Q9FIC8	Germin-like protein subfamily 1 member 16	AT5G39130.1	RmlC-like cupins superfamily protein 	LOC_Os12g05860.1	"Cupin domain containing protein, expressed"	Medtr1g093090.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.216685.1.S1_s_at	A	A2TS	POPTR_0001s01660	POPTR_0001s01660 (11)//POPTR_0001s03730 (10)	scaffold_1:1232754-1233254(-) (11)//scaffold_1:2993074-2993574(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028050.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216687.1.S1_s_at	A	A1TS	POPTR_0001s01720	POPTR_0001s01720 (11)	scaffold_1:1249805-1259326(-) (11)	NA	NA	NA	AT5G45610.1	protein dimerizations 	NA	NA	Medtr5g028070.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216688.1.S1_at	A	A1TS	POPTR_0011s03120	POPTR_0011s03120 (11)	scaffold_11:3186950-3187393(+) (11)	NA	NA	NA	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216691.1.S1_at	A	A1TS	POPTR_0012s08030	POPTR_0012s08030 (11)	scaffold_12:9042366-9042873(+) (11)	NA	O80742	U-box domain-containing protein 19	AT1G60190.1	ARM repeat superfamily protein 	LOC_Os08g32060.1	"spotted leaf 11, putative, expressed"	Medtr8g125550.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.216698.1.S1_at	A	A1TS	POPTR_0001s39455	POPTR_0001s39455 (11)	scaffold_1:38640588-38641669(+) (11)	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.216704.1.S1_s_at	A	A1TS	POPTR_0003s00800	POPTR_0003s00800 (10)	scaffold_3:613372-613591(+) (10)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G14440.2	homeobox protein 31 	LOC_Os11g13930.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g020380.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Zinc finger, C2H2-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216705.1.S1_x_at	A	A2TS	POPTR_0003s00820	POPTR_0003s00830 (11)//POPTR_0003s00820 (11)	scaffold_3:658873-659477(-) (11)//scaffold_3:670690-671294(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216706.1.S1_at	A	A1TS	POPTR_0003s00860	POPTR_0003s00860 (11)	scaffold_3:700285-700825(-) (11)	NA	Q93VV5	Probable peptide/nitrate transporter At1g59740	AT1G59740.1	Major facilitator superfamily protein 	LOC_Os04g36040.1	"peptide transporter PTR2, putative, expressed"	Medtr2g005060.1	"TGF-beta receptor, type I/II extracellular region; ABC transporter related "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.216706.1.S1_x_at	A	A1TS	POPTR_0003s00860	POPTR_0003s00860 (11)	scaffold_3:700289-700825(-) (11)	NA	Q93VV5	Probable peptide/nitrate transporter At1g59740	AT1G59740.1	Major facilitator superfamily protein 	LOC_Os04g36040.1	"peptide transporter PTR2, putative, expressed"	Medtr2g005060.1	"TGF-beta receptor, type I/II extracellular region; ABC transporter related "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.216707.1.S1_at	A	A1TS	POPTR_0003s00880	POPTR_0003s00880 (11)	scaffold_3:715330-717187(-) (11)	NA	Q9Y6D9	Mitotic spindle assembly checkpoint protein MAD1	AT5G49880.1	mitotic checkpoint family protein 	LOC_Os01g65580.3	"mitotic checkpoint family protein, putative, expressed"	NA	NA	GO:0016032|viral reproduction	NA	NA
PtpAffx.216708.1.S1_at	A	A1TS	POPTR_0003s00910	POPTR_0003s00910 (11)	scaffold_3:736651-737814(+) (11)	NA	NA	NA	AT4G24265.1	unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216709.1.S1_at	A	A1TS	POPTR_0003s00920	POPTR_0003s00920 (11)	scaffold_3:739074-739541(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216711.1.S1_at	A	A1TS	POPTR_0003s00940	POPTR_0003s00940 (11)	scaffold_3:750604-751279(-) (11)	NA	Q96282	Chloride channel protein CLC-c	AT5G49890.1	chloride channel C 	LOC_Os04g36560.2	"chloride channel protein, putative, expressed"	Medtr2g005270.1	"CBS; Cl- channel, voltage gated; Twin-arginine translocation pathway signal "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.216712.1.S1_at	A	A1TS	POPTR_0003s00960	POPTR_0003s00960 (11)	scaffold_3:760994-761515(+) (11)	NA	NA	NA	AT1G10280.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os08g01890.1	"DNA binding protein, putative, expressed"	Medtr2g005200.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.216713.1.S1_at	A	A1TS	POPTR_0003s00970	POPTR_0003s00970 (9)	scaffold_3:766138-767716(+) (10)	NA	Q94KB9	MLO-like protein 3	AT3G45290.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr3g160040.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.216714.1.S1_at	A	A1TS	POPTR_0003s01000	POPTR_0003s01000 (9)	scaffold_3:796305-799767(+) (10)	NA	NA	NA	AT1G10280.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g52120.1	"DNA binding protein, putative, expressed"	Medtr2g005200.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.216715.1.S1_a_at	A	A1TS	POPTR_0022s00240	POPTR_0022s00240 (11)	scaffold_22:23558-23644(-) (11)//scaffold_22:23753-23869(-) (11)	NA	Q9SY69	Pentatricopeptide repeat-containing protein At1g10270	AT1G10270.1	glutamine-rich protein 23 	LOC_Os05g30240.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g159710.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216717.1.S1_s_at	A	A1TS	POPTR_0022s00260	POPTR_0022s00260 (11)	scaffold_22:39180-39504(+) (11)	NA	Q9SY66	Protein FAR1-RELATED SEQUENCE 11	AT1G10240.1	FAR1-related sequence 11 	LOC_Os04g36590.1	"transposon protein, putative, unclassified, expressed"	Medtr2g005160.1	"FAR1; Zinc finger, SWIM-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216718.1.S1_x_at	A	A1TS	POPTR_0022s00280	POPTR_0022s00280 (11)	scaffold_22:41110-41891(-) (11)	NA	Q5M868	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.216719.1.S1_at	A	A1TS	POPTR_0022s00310	POPTR_0022s00310 (10)	scaffold_22:63836-64975(+) (10)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G09600.1	Protein kinase superfamily protein 	LOC_Os01g10430.2	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216720.1.S1_s_at	A	A2TS	POPTR_0022s00360	POPTR_0022s00360 (11)//POPTR_0022s00400 (11)	scaffold_22:84871-85245(-) (11)//scaffold_22:117252-117626(-) (11)	NA	Q8LAH7	12-oxophytodienoate reductase 1	AT1G76680.1	12-oxophytodienoate reductase 1 	LOC_Os06g11240.1	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006880.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.216722.1.S1_at	A	A1TS	POPTR_0022s00430	POPTR_0022s00430 (11)	scaffold_22:143090-143364(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216724.1.S1_at	A	A1TS	POPTR_0022s00460	POPTR_0022s00460 (10)	scaffold_22:163801-165362(+) (11)	NA	B0S733	Regulator of nonsense transcripts 3A	AT1G33980.1	Smg-4/UPF3 family protein 	LOC_Os04g35920.2	"nonsense-mediated decay UPF3, putative, expressed"	Medtr2g005430.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216725.1.S1_at	A	A1TS	POPTR_0022s00460	POPTR_0022s00460 (9)	scaffold_22:166698-168262(+) (11)	NA	B0S733	Regulator of nonsense transcripts 3A	AT1G33980.1	Smg-4/UPF3 family protein 	LOC_Os04g35920.2	"nonsense-mediated decay UPF3, putative, expressed"	Medtr2g005430.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216726.1.S1_at	A	A1TS	POPTR_0022s00520	POPTR_0022s00520 (11)	scaffold_22:204422-206724(+) (11)	NA	NA	NA	AT5G49920.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os05g35260.1	"PB1 domain containing protein, expressed"	Medtr2g005490.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216728.1.S1_at	A	A1TS	POPTR_0022s00580	POPTR_0022s00580 (11)	scaffold_22:247311-247812(-) (11)	NA	Q9LUS3	Pentatricopeptide repeat-containing protein At3g16610	AT3G16610.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os01g74600.1	"vegetative storage protein, putative, expressed"	Medtr4g154400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216729.1.S1_s_at	A	A4TS	POPTR_0022s00600	POPTR_0022s00640 (11)//POPTR_0436s00200 (11)//POPTR_0022s00600 (11)//POPTR_0022s00660 (11)	scaffold_22:260837-261169(+) (11)//scaffold_22:296219-296551(+) (11)//scaffold_22:307223-307555(+) (11)//scaffold_436:1558-1890(+) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.216730.1.S1_at	A	A1TS	POPTR_0022s00610	POPTR_0022s00610 (11)	scaffold_22:263574-263880(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216731.1.S1_at	A	A1TS	POPTR_0022s00640	POPTR_0022s00640 (11)	scaffold_22:296591-296636(+) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.216732.1.S1_s_at	A	A1TS	POPTR_0003s14480	POPTR_0003s14480 (11)	scaffold_1:2036581-2036916(+) (11)//scaffold_22:299684-300020(-) (11)//scaffold_3:14563926-14564262(+) (11)	POPTR_0022s00650 (8)//POPTR_0001s02540 (7)//POPTR_0001s11170 (7)	Q7XJU0	Uncharacterized basic helix-loop-helix protein At1g64625	AT2G27230.2	transcription factor-related 	LOC_Os02g45170.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216734.1.S1_at	A	A1TS	POPTR_0022s00710	POPTR_0022s00710 (11)	scaffold_22:339283-340808(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT1G78560.1	Sodium Bile acid symporter family 	LOC_Os12g07270.1	"bile acid sodium symporter family protein, putative, expressed"	Medtr8g118790.2	Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.216735.1.S1_at	A	A1TS	POPTR_0022s00740	POPTR_0022s00740 (11)	scaffold_22:352839-353386(-) (11)	NA	Q8S8P6	Pentatricopeptide repeat-containing protein At2g32630	AT2G32630.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g47470.1	"pentatricopeptide, putative"	Medtr1g065910.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216737.1.S1_at	A	A1TS	POPTR_0022s00760	POPTR_0022s00760 (11)	scaffold_22:363052-363184(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216739.1.S1_at	A	A1MS	POPTR_0460s00200	POPTR_0460s00200 (11)	scaffold_460:11902-12156(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216743.1.S1_s_at	A	A2TS	POPTR_0004s07840	POPTR_0004s07880 (11)//POPTR_0004s07840 (11)	scaffold_4:6421947-6422268(-) (11)//scaffold_4:6442461-6442782(+) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr5g084780.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216750.1.S1_s_at	A	A1TS	POPTR_0011s02820	POPTR_0011s02820 (11)	scaffold_11:2780560-2780647(+) (11)	NA	NA	NA	AT1G29790.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g42770.1	"a_IG002N01.7, putative"	Medtr5g085490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216751.1.S1_s_at	A	A6TS	POPTR_0001s36390	POPTR_0001s37380 (11)//POPTR_0001s36440 (11)//POPTR_0001s36390 (11)//POPTR_1030s00200 (11)//POPTR_0001s36410 (11)//POPTR_0001s37370 (10)	scaffold_1:34955828-34955980(-) (11)//scaffold_1:34981051-34981203(-) (11)//scaffold_1:35036632-35036784(-) (11)//scaffold_1:36364879-36365031(-) (11)//scaffold_1:36374270-36374422(-) (11)//scaffold_1030:249-401(-) (11)	POPTR_0001s37410 (8)	O48923	Cytochrome P450 71D10	AT3G26280.1	"cytochrome P450, family 71, subfamily B, polypeptide 4 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr5g102030.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216753.1.S1_at	A	A1TS	POPTR_0001s10910	POPTR_0001s10910 (11)	scaffold_1:8474806-8475142(+) (11)	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.2	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216753.1.S1_s_at	A	A1TS	POPTR_0001s10910	POPTR_0001s10910 (11)	scaffold_1:8474658-8474994(+) (11)	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.2	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216755.1.S1_s_at	A	A1TS	POPTR_0003s01280	POPTR_0003s01280 (11)	scaffold_3:1136780-1137016(-) (11)	NA	Q6P5E4	UDP-glucose:glycoprotein glucosyltransferase 1	AT1G71220.2	"UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups "	LOC_Os02g44510.1	"UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed"	Medtr2g007060.1	UDP-glucose:Glycoprotein Glucosyltransferase 	GO:0006486|protein amino acid glycosylation	GO:0003980|UDP-glucose:glycoprotein glucosyltransferase activity	NA
PtpAffx.216757.1.S1_at	A	A1MS	POPTR_0013s12210	POPTR_0013s12210 (10)	scaffold_13:12846520-12846939(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216760.1.S1_s_at	A	A1TS	POPTR_0009s12520	POPTR_0009s12520 (11)	scaffold_9:10211746-10212036(+) (11)	NA	P39211	Xylulose kinase	AT2G21370.1	xylulose kinase-1 	LOC_Os07g22650.1	expressed protein	Medtr4g096720.1	"Carbohydrate kinase, FGGY "	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.216763.1.S1_at	A	A1TS	POPTR_0002s13370	POPTR_0002s13370 (11)	scaffold_2:9918760-9919803(+) (11)	POPTR_1075s00010 (7)	Q5EAF2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 11"	AT1G47510.1	inositol polyphosphate 5-phosphatase 11 	LOC_Os03g42810.2	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr1g025830.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216766.1.S1_at	A	A1MS	POPTR_0011s01805	POPTR_0011s01805 (9)	scaffold_11:1409742-1410600(+) (9)//scaffold_11:1435270-1436217(+) (9)//scaffold_11:1600917-1601782(+) (9)	NA	Q9FH83	Probable WRKY transcription factor 52	AT5G45260.1	Disease resistance protein (TIR-NBS-LRR class) 	NA	NA	Medtr4g012470.1	TIR; NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216767.1.S1_at	A	A1TS	POPTR_0257s00210	POPTR_0257s00210 (10)	scaffold_257:14212-14249(+) (10)	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216767.1.S1_x_at	A	A1TS	POPTR_0257s00210	POPTR_0257s00210 (10)	scaffold_257:14172-14248(+) (10)	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216769.1.S1_at	A	A1TS	POPTR_0002s21570	POPTR_0002s21570 (11)	scaffold_2:18098295-18098440(-) (11)	NA	NA	NA	AT4G22140.1	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os09g21770.1	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.216774.1.S1_s_at	A	A2TS	POPTR_0006s05490	POPTR_0006s05490 (11)//POPTR_0016s05250 (10)	scaffold_16:3195931-3196070(-) (10)//scaffold_6:3879863-3880002(+) (11)	NA	NA	NA	AT2G41905.1	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216775.1.S1_at	A	A1TS	POPTR_0006s05540	POPTR_0006s05540 (11)	scaffold_6:3917632-3918104(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216776.1.S1_at	A	A1TS	POPTR_0006s05580	POPTR_0006s05580 (11)	scaffold_6:3938156-3938806(-) (11)	NA	Q9LIC3	"Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial"	AT3G13770.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g41040.1	"pentatricopeptide, putative, expressed"	Medtr1g071450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216777.1.S1_at	A	A1TS	POPTR_0006s05590	POPTR_0006s05590 (11)	scaffold_6:3940377-3940728(-) (11)	NA	NA	NA	AT3G57790.1	Pectin lyase-like superfamily protein 	LOC_Os09g31270.1	"polygalacturonase, putative, expressed"	Medtr7g111130.1	"polygalacturonase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216778.1.S1_at	A	A1TS	POPTR_0006s05600	POPTR_0006s05600 (11)	scaffold_6:3943286-3944892(-) (11)	NA	Q3EAI1	Transcription factor bHLH60	AT3G57800.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g32510.4	"BHLH transcription factor, putative, expressed"	Medtr1g071420.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.216780.1.S1_at	A	A1TS	POPTR_0006s05650	POPTR_0006s05650 (11)	scaffold_6:4001412-4001748(+) (11)	NA	P25766	Ras-related protein RGP1	AT3G12160.1	RAB GTPase homolog A4D 	LOC_Os09g10940.1	"ras-related protein, putative, expressed"	Medtr3g101960.1	Ras GTPase; 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.216781.1.S1_at	A	A1TS	POPTR_0006s05700	POPTR_0006s05700 (11)	scaffold_6:4022485-4023070(+) (11)	NA	Q42798	Cytochrome P450 93A1	AT5G06905.1	"cytochrome P450, family 712, subfamily A, polypeptide 2 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g111280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.216782.1.S1_at	A	A1TS	POPTR_0006s05710	POPTR_0006s05710 (11)	scaffold_6:4029882-4030400(+) (11)	NA	Q42798	Cytochrome P450 93A1	AT5G06900.1	"cytochrome P450, family 93, subfamily D, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr3g021620.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.216783.1.S1_at	A	A1TS	POPTR_0006s05720	POPTR_0006s05720 (11)	scaffold_6:4033373-4034010(+) (11)	NA	Q42798	Cytochrome P450 93A1	AT5G06900.1	"cytochrome P450, family 93, subfamily D, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g111290.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216784.1.S1_at	A	A1TS	POPTR_0006s05740	POPTR_0006s05740 (11)	scaffold_6:4039549-4040056(-) (11)	NA	Q05091	Polygalacturonase inhibitor	AT5G06860.1	polygalacturonase inhibiting protein 1 	LOC_Os05g01380.1	"polygalacturonase inhibitor precursor, putative, expressed"	Medtr7g111410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.216785.1.S1_at	A	A1TS	POPTR_0006s05760	POPTR_0006s05760 (11)	scaffold_6:4050131-4050728(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT5G06850.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os06g41090.1	"anthranilate phosphoribosyltransferase, putative, expressed"	AC149807_12.1	C2 AC149807.14 75595-79594 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216786.1.S1_at	A	A1TS	POPTR_0006s05770	POPTR_0006s05770 (11)	scaffold_6:4057920-4060686(-) (11)	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT5G06839.3	bZIP transcription factor family protein 	LOC_Os09g31390.1	"transcription factor, putative, expressed"	Medtr7g111420.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.216788.1.S1_at	A	A1TS	POPTR_0006s05870	POPTR_0006s05870 (9)	scaffold_6:4133531-4134797(-) (9)	NA	P46379	Large proline-rich protein BAT3	AT5G25270.1	Ubiquitin-like superfamily protein 	LOC_Os08g19830.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216789.1.S1_at	A	A1TS	POPTR_0006s05890	POPTR_0006s05890 (11)	scaffold_6:4151520-4152027(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g122460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216790.1.S1_s_at	A	A1TS	POPTR_0006s05900	POPTR_0006s05900 (11)	scaffold_6:4156583-4157670(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216791.1.S1_at	A	A1TS	POPTR_0006s05950	POPTR_0006s05950 (11)	scaffold_6:4201858-4202818(+) (11)	NA	NA	NA	AT2G12646.1	PLATZ transcription factor family protein 	LOC_Os02g09070.1	"zinc-binding protein, putative, expressed"	Medtr8g122390.1	Protein of unknown function DUF597 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216792.1.S1_at	A	A1TS	POPTR_0006s06010	POPTR_0006s06010 (11)	scaffold_6:4272436-4273842(-) (11)	NA	NA	NA	AT2G12462.1	BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g55120.1	"jp18, putative, expressed"	Medtr8g122290.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216793.1.S1_at	A	A1TS	POPTR_0006s06030	POPTR_0006s06030 (11)	scaffold_6:4285002-4287099(-) (11)	NA	Q3MHX6	Protein OS-9	AT5G35080.1	"INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g43710.1	"glucosidase II beta subunit-like domain containing protein, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.216795.1.S1_at	A	A1TS	POPTR_0006s06110	POPTR_0006s06110 (11)	scaffold_6:4340601-4343215(-) (11)	NA	Q3E9A0	"Probable anion transporter 6, chloroplastic"	AT5G20380.1	phosphate transporter 4;5 	LOC_Os09g38410.1	"sialin, putative, expressed"	Medtr8g122090.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216796.1.S1_at	A	A1TS	POPTR_0006s06120	POPTR_0006s06120 (9)	scaffold_6:4350696-4352501(+) (9)	NA	NA	NA	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g21550.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr8g122060.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216797.1.S1_at	A	A1TS	POPTR_0006s06130	POPTR_0006s06130 (11)	scaffold_6:4356443-4357171(+) (11)	NA	Q39224	Protein SRG1	AT5G20400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08023.1	"flavonol synthase/flavanone 3-hydroxylase, putative"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.216798.1.S1_at	A	A1TS	POPTR_0006s06140	POPTR_0006s06140 (11)	scaffold_6:4361377-4361859(-) (11)	NA	Q944B6	"Arogenate dehydrogenase 1, chloroplastic"	AT5G34930.1	arogenate dehydrogenase 	LOC_Os06g49505.1	"arogenate dehydrogenase 1, chloroplast precursor, putative, expressed"	Medtr8g122040.1	"Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216799.1.S1_at	A	A1TS	POPTR_0006s06150	POPTR_0006s06150 (9)	scaffold_6:4367623-4368448(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G54070.1	Ankyrin repeat family protein 	LOC_Os01g61990.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr3g076350.1	"ankyrin repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216800.1.S1_at	A	A1TS	POPTR_0006s06150	POPTR_0006s06150 (9)	scaffold_6:4369559-4369933(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G54070.1	Ankyrin repeat family protein 	LOC_Os01g61990.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr3g076350.1	"ankyrin repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216801.1.S1_at	A	A1TS	POPTR_0006s06200	POPTR_0006s06200 (9)	scaffold_6:4410832-4411423(-) (9)	NA	NA	NA	AT1G49920.1	MuDR family transposase 	LOC_Os10g01550.2	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.216802.1.S1_at	A	A1TS	POPTR_0006s06230	POPTR_0006s06230 (11)	scaffold_6:4435740-4436017(+) (11)	NA	Q6S5G3	"Translocase of chloroplast 90, chloroplastic"	AT5G20300.2	Avirulence induced gene (AIG1) family protein 	LOC_Os12g09570.2	"GTP binding protein, putative, expressed"	Medtr8g121750.1	"GTP-binding protein, HSR1-related; Chloroplast protein import component Toc86/159 "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.216803.1.S1_at	A	A1MS	POPTR_0006s06260	POPTR_0006s06260 (11)	scaffold_6:4453902-4454493(+) (11)	NA	Q39262	Zinc finger protein 3	AT5G01860.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr5g008370.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.216804.1.S1_at	A	A1TS	POPTR_0006s06280	POPTR_0006s06280 (11)	scaffold_6:4477848-4478140(+) (11)	NA	P60300	Putative chloride channel-like protein CLC-g	AT5G33280.1	Voltage-gated chloride channel family protein 	LOC_Os04g55210.1	"chloride channel protein, putative, expressed"	Medtr8g121690.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.216805.1.S1_at	A	A1TS	POPTR_0006s06285	POPTR_0006s06285 (10)	scaffold_6:4481013-4481292(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216806.1.S1_at	A	A1TS	POPTR_1496s00200	POPTR_1496s00200 (10)	scaffold_1496:876-1124(+) (11)	NA	Q94AA9	"Xylogalacturonan beta-1,3-xylosyltransferase"	AT5G33290.1	xylogalacturonan deficient 1 	NA	NA	Medtr8g121620.1	Exostosin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216807.1.S1_at	A	A1TS	POPTR_0006s06330	POPTR_0006s06330 (11)	scaffold_6:4518106-4518701(+) (11)	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT5G20260.1	Exostosin family protein 	LOC_Os02g39960.1	"exostosin family protein, putative"	Medtr8g121620.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.216808.1.S1_at	A	A1TS	POPTR_0006s06340	POPTR_0006s06340 (11)	scaffold_6:4523939-4524498(+) (11)	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT5G20260.1	Exostosin family protein 	LOC_Os02g39960.1	"exostosin family protein, putative"	Medtr8g121610.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.21681.1.S1_at	A	A1TS	POPTR_0006s14940	POPTR_0006s14940 (10)	scaffold_6:12420531-12421117(+) (10)	NA	NA	NA	AT1G72740.2	Homeodomain-like/winged-helix DNA-binding family protein 	LOC_Os01g51154.1	"single myb histone, putative, expressed"	Medtr8g021370.2	"Linker histone, N-terminal; Homeodomain-related "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.216810.1.S1_at	A	A1MS	POPTR_0003s07420	POPTR_0003s07420 (11)	scaffold_3:8986131-8986280(-) (11)	NA	Q39079	Chaperone protein dnaJ 13	AT2G35720.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g36370.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g012600.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.216810.1.S1_s_at	A	A2TS	POPTR_0001s15840	POPTR_0001s15840 (11)//POPTR_0003s07420 (11)	scaffold_1:12675344-12675425(+) (11)//scaffold_3:8986154-8986235(-) (11)	NA	Q39079	Chaperone protein dnaJ 13	AT2G35720.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g36370.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g012600.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.216810.1.S1_x_at	A	A1MS	POPTR_0003s07420	POPTR_0003s07420 (11)	scaffold_3:8986131-8986280(-) (11)	NA	Q39079	Chaperone protein dnaJ 13	AT2G35720.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g36370.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g012600.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.216812.1.S1_at	A	A1TS	POPTR_0019s12570	POPTR_0019s12570 (11)	scaffold_19:13616633-13617064(-) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.216816.1.S1_at	A	A1TS	POPTR_0004s22940	POPTR_0004s22940 (11)	scaffold_4:21768457-21768657(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.216816.1.S1_x_at	A	A1TS	POPTR_0004s22940	POPTR_0004s22940 (11)	scaffold_4:21768465-21768676(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.216818.1.S1_at	A	A1TS	POPTR_0323s00220	POPTR_0323s00220 (11)	scaffold_323:12889-13810(+) (11)	POPTR_0001s32710 (8)	NA	NA	NA	NA	NA	NA	Medtr3g040820.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21682.1.S1_at	A	A1TS	POPTR_0018s06940	POPTR_0018s06940 (11)	scaffold_18:7044085-7045372(-) (11)	NA	Q9SU94	Probable protein arginine N-methyltransferase 1.1	AT4G29510.1	arginine methyltransferase 11 	LOC_Os09g19560.1	"methyltransferase, putative, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.216820.1.S1_at	A	A1TS	POPTR_0001s34250	POPTR_0001s34250 (11)	scaffold_1:32404507-32405021(+) (11)//scaffold_53:94985-95499(-) (9)	POPTR_0053s00236 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216821.1.S1_s_at	A	A7TS	POPTR_0001s23050	POPTR_0001s23070 (11)//POPTR_0004s19050 (11)//POPTR_0019s02590 (11)//POPTR_0001s23050 (11)//POPTR_0004s10900 (11)//POPTR_0004s18990 (11)//POPTR_0001s23080 (10)	scaffold_1:22134277-22134473(-) (11)//scaffold_1:22174110-22174306(-) (11)//scaffold_1:22207447-22207643(-) (10)//scaffold_19:2348952-2349148(-) (11)//scaffold_4:9477534-9477730(+) (11)//scaffold_4:18851012-18851208(+) (11)//scaffold_4:18949029-18949225(+) (11)	NA	Q7XKV4	Beta-glucosidase 12	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39864.4	"Os4bglu11 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.216824.1.S1_at	A	A1MS	POPTR_0005s09190	POPTR_0005s09190 (11)	scaffold_5:6426535-6426569(-) (11)	NA	P22302	"Superoxide dismutase [Fe], chloroplastic (Fragment)"	AT5G23310.1	Fe superoxide dismutase 3 	LOC_Os06g05110.1	"superoxide dismutase, chloroplast, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
PtpAffx.216824.1.S1_s_at	A	A1TS	POPTR_0005s09190	POPTR_0005s09190 (10)	scaffold_5:6426637-6426805(-) (10)	NA	P22302	"Superoxide dismutase [Fe], chloroplastic (Fragment)"	AT5G23310.1	Fe superoxide dismutase 3 	LOC_Os06g05110.1	"superoxide dismutase, chloroplast, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
PtpAffx.216824.1.S1_x_at	A	A1MS	POPTR_0005s09190	POPTR_0005s09190 (10)	scaffold_5:6426530-6426836(-) (11)	NA	P22302	"Superoxide dismutase [Fe], chloroplastic (Fragment)"	AT5G23310.1	Fe superoxide dismutase 3 	LOC_Os06g05110.1	"superoxide dismutase, chloroplast, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
PtpAffx.216829.1.S1_at	A	A1TS	POPTR_0145s00220	POPTR_0145s00220 (11)	scaffold_145:38085-38153(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216829.1.S1_x_at	A	A1TS	POPTR_0145s00220	POPTR_0145s00220 (11)	scaffold_145:38014-38153(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216832.1.S1_s_at	A	A7TS	POPTR_0019s02060	POPTR_0019s02200 (11)//POPTR_0019s02060 (11)//POPTR_0190s00200 (11)//POPTR_0019s03080 (11)//POPTR_0019s02160 (10)//POPTR_0019s02180 (9)//POPTR_0190s00220 (9)	scaffold_19:1924166-1924343(-) (11)//scaffold_19:1994360-1994493(-) (10)//scaffold_19:2032388-2032565(-) (9)//scaffold_19:2047297-2047448(-) (9)//scaffold_19:2061738-2061915(-) (11)//scaffold_19:3079718-3079989(+) (10)//scaffold_19:3097511-3097688(-) (11)//scaffold_190:10055-10232(-) (11)//scaffold_190:30819-30996(-) (9)	NA	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.216833.1.S1_s_at	A	A1TS	POPTR_0011s08630	POPTR_0011s08630 (11)	scaffold_11:10435595-10435973(-) (9)//scaffold_11:10487928-10488306(-) (11)	POPTR_0011s08620 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216835.1.S1_at	A	A1TS	POPTR_0011s08570	POPTR_0011s08570 (11)	scaffold_11:10218176-10219032(-) (11)	NA	NA	NA	AT5G55570.1	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216835.1.S1_s_at	A	A2TS	POPTR_0011s08570	POPTR_0011s08590 (11)//POPTR_0011s08570 (11)	scaffold_11:10219038-10219262(-) (11)//scaffold_11:10304731-10304955(-) (11)	NA	NA	NA	AT5G55570.1	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216837.1.S1_at	A	A1TS	POPTR_0011s08580	POPTR_0011s08580 (10)	scaffold_11:10239705-10240980(-) (10)	NA	NA	NA	AT5G55580.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g39430.1	"mTERF family protein, expressed"	Medtr5g102090.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216844.1.S1_at	A	A1TS	POPTR_0466s00210	POPTR_0466s00210 (11)	scaffold_466:10647-10770(+) (11)	NA	Q02200	Lignin-forming anionic peroxidase	AT1G14550.1	Peroxidase superfamily protein 	LOC_Os03g32050.1	"peroxidase precursor, putative, expressed"	Medtr4g114950.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.216845.1.S1_at	A	A1TS	POPTR_0003s18380	POPTR_0003s18380 (11)	scaffold_3:17475634-17475724(-) (11)//scaffold_3:17509049-17509139(-) (11)	NA	Q8L831	Nudix hydrolase 3	AT1G79690.1	nudix hydrolase homolog 3 	LOC_Os02g55030.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.216845.1.S1_x_at	A	A1TS	POPTR_0003s18380	POPTR_0003s18380 (11)	scaffold_3:17475634-17475927(-) (11)//scaffold_3:17509049-17509342(-) (11)	NA	Q8L831	Nudix hydrolase 3	AT1G79690.1	nudix hydrolase homolog 3 	LOC_Os02g55030.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.216859.1.S1_at	A	A1TS	POPTR_0018s05780	POPTR_0018s05780 (11)	scaffold_18:5378424-5378786(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216861.1.S1_at	A	A1TS	POPTR_0011s13680	POPTR_0011s13680 (11)	scaffold_11:16380336-16380556(+) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28390.1	P-glycoprotein 18 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216861.1.S1_x_at	A	A1TS	POPTR_0011s13680	POPTR_0011s13680 (11)	scaffold_11:16380336-16380556(+) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28390.1	P-glycoprotein 18 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216862.1.S1_at	A	A1TS	POPTR_0011s13690	POPTR_0011s13690 (10)	scaffold_11:16384721-16384754(+) (10)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os04g40570.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216862.1.S1_s_at	A	A1TS	POPTR_0011s13690	POPTR_0011s13690 (11)	scaffold_11:16384375-16384735(+) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os04g40570.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216865.1.S1_at	A	A1MS	POPTR_0018s11950	POPTR_0018s11950 (11)	scaffold_18:12586184-12586255(+) (11)	POPTR_0006s20210 (6)	NA	NA	AT2G24300.2	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216865.1.S1_s_at	A	A2TS	POPTR_0006s20210	POPTR_0018s11950 (11)//POPTR_0006s20210 (11)	scaffold_18:12585455-12585868(+) (11)//scaffold_6:19259493-19259906(+) (11)	NA	NA	NA	AT2G24300.2	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216866.1.S1_at	A	A1MS	POPTR_0007s02490	POPTR_0007s02490 (9)	scaffold_7:1475571-1476064(+) (9)	NA	Q9SRV7	Putative syntaxin-131	AT3G03800.1	syntaxin of plants 131 	LOC_Os06g07200.1	"syntaxin, putative, expressed"	Medtr2g103770.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
PtpAffx.216874.1.S1_s_at	A	A1TS	POPTR_0004s23790	POPTR_0004s23790 (11)	scaffold_4:22419815-22420262(+) (11)	NA	Q93VV5	Probable peptide/nitrate transporter At1g59740	AT1G59740.1	Major facilitator superfamily protein 	LOC_Os11g12740.1	"peptide transporter PTR2, putative, expressed"	Medtr2g005060.1	"TGF-beta receptor, type I/II extracellular region; ABC transporter related "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.216876.1.S1_x_at	A	A1TS	POPTR_0002s00920	POPTR_0002s00920 (9)	scaffold_2:436815-437421(-) (11)	POPTR_1233s00200 (7)	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os11g36090.1	"receptor kinase, putative, expressed"	Medtr7g009400.1	"Tyrosine protein kinase, active site "	NA	GO:0005515|protein binding	NA
PtpAffx.216890.1.S1_at	A	A1TS	POPTR_0030s00570	POPTR_0030s00570 (11)	scaffold_30:304302-304694(+) (11)	POPTR_0030s00550 (6)	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.216893.1.S1_s_at	A	A1TS	POPTR_0008s18530	POPTR_0008s18530 (9)	scaffold_8:12505250-12505282(-) (9)	NA	O64474	Putative cadmium/zinc-transporting ATPase 2	AT2G19110.1	heavy metal atpase 4 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr2g041260.1	Cof protein; Heavy metal translocating P-type ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216896.1.S1_at	A	A1TS	POPTR_0017s13290	POPTR_0017s13290 (11)	scaffold_17:13451517-13452873(-) (11)	NA	Q8BGF9	Solute carrier family 25 member 44	AT5G15640.1	Mitochondrial substrate carrier family protein 	LOC_Os03g54760.1	"mitochondrial carrier protein, putative, expressed"	Medtr2g036920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216896.1.S1_s_at	A	A2TS	POPTR_0004s11600	POPTR_0017s13290 (11)//POPTR_0004s11600 (11)	scaffold_17:13451542-13453650(-) (11)//scaffold_4:10378001-10380043(-) (11)	NA	Q8BGF9	Solute carrier family 25 member 44	AT5G15640.1	Mitochondrial substrate carrier family protein 	LOC_Os03g54760.1	"mitochondrial carrier protein, putative, expressed"	Medtr2g036920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216899.1.S1_s_at	A	A2TS	POPTR_0017s13300	POPTR_0017s13300 (11)//POPTR_0017s13310 (9)	scaffold_17:13463951-13464695(+) (11)//scaffold_17:13470674-13471286(+) (9)	NA	Q94KT8	Protein COBRA	AT5G60920.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os07g41310.1	"COBRA, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2169.1.S1_s_at	A	A1TS	POPTR_0011s07110	POPTR_0011s07110 (11)	scaffold_11:7847436-7847920(-) (11)	NA	NA	NA	AT2G34200.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g53130.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g134950.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216900.1.S1_s_at	A	A1TS	POPTR_0017s13320	POPTR_0017s13320 (11)	scaffold_17:13481315-13481460(+) (11)	NA	NA	NA	AT3G29970.1	B12D protein 	LOC_Os07g41340.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216901.1.S1_at	A	A1TS	POPTR_0017s13330	POPTR_0017s13330 (10)	scaffold_17:13486639-13486785(+) (10)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT1G13680.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os03g30130.3	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216901.1.S1_x_at	A	A1TS	POPTR_0017s13330	POPTR_0017s13330 (10)	scaffold_17:13486296-13486785(+) (10)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT1G13680.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os03g30130.3	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216902.1.S1_at	A	A1TS	POPTR_0017s13370	POPTR_0017s13370 (11)	scaffold_17:13554251-13554894(+) (11)	NA	Q9LX82	Transcription factor MYB48	AT3G30210.1	myb domain protein 121 	LOC_Os02g40530.1	"MYB family transcription factor, putative, expressed"	Medtr1g065650.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216902.1.S1_x_at	A	A1TS	POPTR_0017s13370	POPTR_0017s13370 (11)	scaffold_17:13554251-13554894(+) (11)	NA	Q9LX82	Transcription factor MYB48	AT3G30210.1	myb domain protein 121 	LOC_Os02g40530.1	"MYB family transcription factor, putative, expressed"	Medtr1g065650.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216903.1.S1_at	A	A1TS	POPTR_0017s13450	POPTR_0017s13450 (11)	scaffold_17:13610472-13611204(-) (11)	NA	O82200	Inositol oxygenase 2	AT2G19800.1	myo-inositol oxygenase 2 	LOC_Os06g36560.1	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
PtpAffx.216904.1.S1_at	A	A1TS	POPTR_0017s13460	POPTR_0017s13460 (11)	scaffold_17:13619957-13622680(+) (11)	NA	NA	NA	AT5G38880.1	unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - 6; Bacteria - 80; Metazoa - 195; Fungi - 44; Plants - 59; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). 	LOC_Os09g21780.1	expressed protein	Medtr7g015050.1	"IMP dehydrogenase/GMP reductase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216904.1.S1_s_at	A	A2TS	POPTR_0004s11320	POPTR_0017s13460 (11)//POPTR_0004s11320 (11)	scaffold_17:13619941-13624788(+) (11)//scaffold_4:9917324-9921124(-) (11)	NA	NA	NA	AT5G38880.1	unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - 6; Bacteria - 80; Metazoa - 195; Fungi - 44; Plants - 59; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). 	LOC_Os09g21780.1	expressed protein	Medtr7g015050.1	"IMP dehydrogenase/GMP reductase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216905.1.S1_at	A	A1TS	POPTR_0017s13490	POPTR_0017s13490 (11)	scaffold_17:13633696-13633953(+) (11)	NA	NA	NA	AT5G15780.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr7g015090.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216905.1.S1_x_at	A	A1TS	POPTR_0017s13490	POPTR_0017s13490 (11)	scaffold_17:13633664-13633953(+) (11)	NA	NA	NA	AT5G15780.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr7g015090.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216907.1.S1_at	A	A1TS	POPTR_0017s13500	POPTR_0017s13500 (11)	scaffold_17:13635593-13636357(+) (11)	NA	Q9SIR9	Serpin-Z10	AT2G25240.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41419.1	"serpin domain containing protein, putative, expressed"	Medtr7g047230.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216908.1.S1_at	A	A1TS	POPTR_0017s13520	POPTR_0017s13520 (11)	scaffold_17:13644997-13645550(+) (11)	NA	Q9S7T8	Serpin-ZX	AT1G47710.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41438.1	"serpin domain containing protein, putative, expressed"	Medtr3g020290.1	"Proteinase inhibitor I4, serpin "	NA	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.216909.1.S1_at	A	A1TS	POPTR_0017s13550	POPTR_0017s13550 (11)	scaffold_17:13674555-13675067(+) (11)	NA	Q5T4S7	E3 ubiquitin-protein ligase UBR4	AT3G02260.1	auxin transport protein (BIG) 	LOC_Os09g07300.1	"BIG, putative, expressed"	Medtr7g015210.1	"Zinc finger, ZZ-type; Zinc finger, C2H2-type "	NA	GO:0004842|ubiquitin-protein ligase activity||GO:0008270|zinc ion binding	NA
PtpAffx.216910.1.S1_x_at	A	A1TS	POPTR_0017s13570	POPTR_0017s13570 (11)	scaffold_17:13691772-13692587(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216911.1.S1_at	A	A1TS	POPTR_0017s13580	POPTR_0017s13580 (11)	scaffold_17:13704921-13705443(+) (11)	NA	Q9LFV3	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730	AT5G15730.2	Protein kinase superfamily protein 	LOC_Os06g17285.2	"protein kinase, putative, expressed"	Medtr2g096390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216912.1.S1_at	A	A1TS	POPTR_0017s13590	POPTR_0017s13590 (11)	scaffold_17:13708370-13708795(-) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT2G03890.1	phosphoinositide 4-kinase gamma 7 	LOC_Os06g17290.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr7g015410.1	"Phosphatidylinositol 3- and 4-kinase, catalytic, identical "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.216913.1.S1_at	A	A1TS	POPTR_0017s13620	POPTR_0017s13620 (11)	scaffold_17:13729226-13729752(-) (11)	NA	Q0WW21	Anthocyanin 5-O-glucosyltransferase	AT4G14090.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216914.1.S1_at	A	A1TS	POPTR_0017s13640	POPTR_0017s13640 (11)	scaffold_17:13737538-13737578(-) (11)	NA	Q9SN86	"Malate dehydrogenase, chloroplastic"	AT3G47520.1	malate dehydrogenase 	LOC_Os08g33720.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.216915.1.S1_at	A	A1TS	POPTR_0017s13660	POPTR_0017s13660 (11)	scaffold_17:13757069-13758045(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216916.1.S1_at	A	A1TS	POPTR_0017s13670	POPTR_0017s13670 (11)	scaffold_17:13767803-13767878(-) (11)	NA	Q9LFV5	F-box/kelch-repeat protein At5g15710	AT5G15710.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g57290.1	"OsFBX153 - F-box domain containing protein, expressed"	Medtr7g015440.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216916.1.S1_x_at	A	A1TS	POPTR_0017s13670	POPTR_0017s13670 (11)	scaffold_17:13767521-13768091(-) (11)	NA	Q9LFV5	F-box/kelch-repeat protein At5g15710	AT5G15710.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g57290.1	"OsFBX153 - F-box domain containing protein, expressed"	Medtr7g015440.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216917.1.S1_at	A	A1TS	POPTR_0017s13680	POPTR_0017s13680 (11)	scaffold_17:13770794-13771379(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216918.1.S1_at	A	A1TS	POPTR_0017s13690	POPTR_0017s13690 (11)	scaffold_17:13781622-13783723(+) (11)	NA	Q7ZVZ7	Abhydrolase domain-containing protein FAM108C1	AT3G30380.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g42730.1	"OsPOP14 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216919.1.S1_at	A	A1TS	POPTR_0017s13720	POPTR_0017s13720 (11)	scaffold_17:13795330-13795884(+) (11)	NA	NA	NA	AT3G13430.3	RING/U-box superfamily protein 	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g036850.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216921.1.S1_at	A	A1TS	POPTR_0001s23340	POPTR_0001s23340 (11)	scaffold_1:22637509-22637708(+) (9)//scaffold_1:22679126-22679342(+) (11)	POPTR_0001s23320 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216923.1.S1_s_at	A	A2TS	POPTR_0016s03890	POPTR_0016s03890 (11)//POPTR_0016s03880 (10)	scaffold_16:2162729-2169566(+) (11)//scaffold_16:2169047-2169549(+) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os05g15230.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216924.1.S1_s_at	A	A2TS	POPTR_0101s00220	POPTR_0101s00220 (11)//POPTR_0101s00270 (10)	scaffold_101:17650-18132(-) (11)//scaffold_101:55675-56157(-) (10)	NA	NA	NA	AT3G48770.1	DNA binding;ATP binding 	LOC_Os11g31500.1	"ATP binding protein, putative"	AC233682_17.1	"ATP-binding region, ATPase-like AC233682.2 53559-59969 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216926.1.S1_at	A	A1TS	POPTR_0012s11980	POPTR_0012s11980 (11)	scaffold_12:12332427-12332600(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216927.1.S1_at	A	A1MS	POPTR_0009s11210	POPTR_0009s11210 (11)	scaffold_9:9388876-9388911(-) (11)	NA	NA	NA	AT1G49470.1	Family of unknown function (DUF716)  	LOC_Os08g36040.1	"plant viral response family protein, putative, expressed"	Medtr4g092830.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216928.1.S1_s_at	A	A1TS	POPTR_0016s02661	POPTR_0016s02661 (11)	scaffold_16:1312205-1312550(+) (11)	POPTR_0016s02730 (6)	Q0JC27	Protein NLP2	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216929.1.S1_at	A	A1TS	POPTR_0178s00230	POPTR_0178s00230 (11)	scaffold_178:30686-30840(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g020460.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216929.1.S1_x_at	A	A1TS	POPTR_0178s00230	POPTR_0178s00230 (11)	scaffold_178:30270-30850(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g020460.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216934.1.S1_s_at	A	A1TS	POPTR_0010s25630	POPTR_0010s25630 (11)	scaffold_10:21220364-21220774(-) (11)	NA	Q54VZ8	Exocyst complex component 8	AT5G49830.1	exocyst complex component 84B 	LOC_Os07g10110.1	expressed protein	Medtr4g023160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216942.1.S1_s_at	A	A2TS	POPTR_0003s20530	POPTR_0003s22390 (11)//POPTR_0003s20530 (11)	scaffold_3:19019160-19019213(-) (11)//scaffold_3:20204490-20204543(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216943.1.S1_at	A	A1TS	POPTR_0007s08890	POPTR_0007s08890 (11)	scaffold_7:7916845-7917078(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216944.1.S1_at	A	A1TS	POPTR_0007s08880	POPTR_0007s08880 (11)	scaffold_7:7903848-7904677(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216947.1.S1_at	A	A1TS	POPTR_0007s08920	POPTR_0007s08920 (11)	scaffold_7:8097844-8098296(-) (11)	NA	NA	NA	AT4G35700.1	zinc finger (C2H2 type) family protein 	LOC_Os02g19180.1	ZOS2-06 - C2H2 zinc finger protein	Medtr5g023800.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.216948.1.S1_at	A	A1TS	POPTR_0007s08930	POPTR_0007s08930 (11)	scaffold_7:8113641-8115105(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216950.1.S1_at	A	A1TS	POPTR_0007s08940	POPTR_0007s08940 (11)	scaffold_7:8146298-8146621(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216951.1.S1_at	A	A1TS	POPTR_0007s08950	POPTR_0007s08950 (11)	scaffold_7:8183250-8183766(+) (11)	NA	NA	NA	AT5G05800.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g10550.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr5g022470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216957.1.S1_s_at	A	A1TS	POPTR_0006s19140	POPTR_0006s19140 (11)	scaffold_6:18077097-18077619(-) (11)	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os09g25850.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.216959.1.S1_at	A	A1TS	POPTR_0006s29070	POPTR_0006s29070 (11)	scaffold_6:26551083-26551450(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31550.1	"disease resistance protein RGA4, putative"	Medtr3g019390.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216959.1.S1_x_at	A	A1TS	POPTR_0006s29070	POPTR_0006s29070 (11)	scaffold_6:26551101-26551450(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31550.1	"disease resistance protein RGA4, putative"	Medtr3g019390.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216961.1.S1_s_at	A	A1TS	POPTR_0110s00200	POPTR_0110s00200 (11)	scaffold_110:7499-8074(-) (11)	NA	Q8VXZ0	"Nudix hydrolase 20, chloroplastic"	AT5G19460.1	nudix hydrolase homolog 20 	LOC_Os09g15340.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.216962.1.S1_at	A	A1TS	POPTR_0008s00880	POPTR_0008s00880 (11)	scaffold_8:417637-417711(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216963.1.S1_at	A	A1MS	POPTR_0001s25460	POPTR_0001s25460 (9)	scaffold_1:24575171-24575657(+) (9)	NA	Q304B9	Neutral ceramidase	AT1G07380.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216965.1.S1_at	A	A1TS	POPTR_0007s02650	POPTR_0007s02650 (9)	scaffold_7:1553225-1553420(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216968.1.S1_at	A	A1TS	POPTR_0001s12600	POPTR_0001s12600 (11)	scaffold_1:9759094-9759275(+) (11)	NA	Q9ZUM9	Histone-lysine N-methyltransferase ASHR2	AT2G19640.2	ASH1-related protein 2 	LOC_Os08g10470.2	"histone-lysine N-methyltransferase ASHR2, putative, expressed"	Medtr5g027240.1	"Nuclear protein SET; Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.216970.1.S1_at	A	A4TS	POPTR_0017s13240	POPTR_0017s13240 (10)//POPTR_0017s13270 (9)//POPTR_0017s13150 (9)//POPTR_0017s13190 (9)	scaffold_17:13303333-13303739(+) (9)//scaffold_17:13361899-13362305(+) (9)//scaffold_17:13425454-13425994(+) (10)//scaffold_17:13441767-13442307(+) (9)	NA	Q9FID8	Putative receptor-like protein kinase At5g39000	AT5G39000.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g56330.1	"TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.216971.1.S1_at	A	A1TS	POPTR_0001s36660	POPTR_0001s36660 (11)	scaffold_1:35353458-35353659(+) (11)	NA	NA	NA	AT1G50720.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216972.1.S1_at	A	A1TS	POPTR_0006s16140	POPTR_0006s16140 (11)	scaffold_6:14024809-14024896(+) (11)	NA	NA	NA	AT5G19650.1	ovate family protein 8 	LOC_Os01g12690.1	"plant-specific domain TIGR01568 family protein, expressed"	Medtr4g158820.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216973.1.S1_at	A	A1TS	POPTR_0006s16130	POPTR_0006s16130 (11)	scaffold_6:14008587-14009119(+) (11)	NA	Q8VZ80	Polyol transporter 5	AT3G18830.1	polyol/monosaccharide transporter 5 	LOC_Os07g39350.1	"transporter family protein, putative, expressed"	Medtr4g158850.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.216975.1.S1_at	A	A1TS	POPTR_0006s16120	POPTR_0006s16120 (11)	scaffold_6:13991776-13993097(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216976.1.S1_at	A	A2TS	POPTR_0130s00210	POPTR_0130s00210 (11)//POPTR_0006s16110 (10)	scaffold_130:21795-22043(-) (11)//scaffold_6:13990935-13991183(+) (10)	NA	O22025	Protein cfxQ homolog	AT3G24530.1	AAA-type ATPase family protein / ankyrin repeat family protein 	LOC_Os02g16660.1	"cbxX, chromosomal, putative, expressed"	Medtr5g026960.1	Ankyrin 	NA	GO:0005524|ATP binding	NA
PtpAffx.216976.1.S1_x_at	A	A1TS	POPTR_0130s00210	POPTR_0130s00210 (11)	scaffold_130:21527-22043(-) (11)//scaffold_6:13990935-13991450(+) (10)	POPTR_0006s16110 (7)	O22025	Protein cfxQ homolog	AT3G24530.1	AAA-type ATPase family protein / ankyrin repeat family protein 	LOC_Os02g16660.1	"cbxX, chromosomal, putative, expressed"	Medtr5g026960.1	Ankyrin 	NA	GO:0005524|ATP binding	NA
PtpAffx.216977.1.S1_at	A	A1TS	POPTR_0006s16070	POPTR_0006s16070 (11)	scaffold_6:13914275-13914820(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G03390.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr3g150860.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.216979.1.S1_at	A	A1TS	POPTR_0006s16240	POPTR_0006s16240 (11)	scaffold_6:14167431-14168024(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216983.1.S1_at	A	A1TS	POPTR_0006s16310	POPTR_0006s16310 (11)	scaffold_6:14223526-14225436(-) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os06g06780.1	"harpin-induced protein, putative, expressed"	Medtr2g122860.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.216984.1.S1_at	A	A1TS	POPTR_0006s16330	POPTR_0006s16330 (11)	scaffold_6:14244479-14244864(-) (11)	NA	Q66GI4	"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial"	AT2G32230.1	proteinaceous RNase P 1 	LOC_Os02g17360.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g159290.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216985.1.S1_at	A	A1TS	POPTR_0006s16340	POPTR_0006s16340 (11)	scaffold_6:14262391-14265488(-) (11)	NA	Q95QD7	Protein lin-54	AT4G29000.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os01g55580.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	AC225507_24.1	"Tesmin/TSO1-like, CXC AC225507.11 107125-103243 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216986.1.S1_at	A	A1TS	POPTR_0006s16390	POPTR_0006s16390 (11)	scaffold_6:14331922-14332473(-) (11)	NA	NA	NA	AT5G19580.1	glyoxal oxidase-related protein 	LOC_Os01g48540.1	"glyoxal oxidase-related, putative, expressed"	Medtr4g159430.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216987.1.S1_at	A	A1TS	POPTR_0006s16400	POPTR_0006s16400 (11)	scaffold_6:14336134-14336976(+) (11)//scaffold_6:14640542-14640951(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216988.1.S1_at	A	A1MS	POPTR_0006s16700	POPTR_0006s16700 (11)	scaffold_6:14619514-14620143(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216989.1.S1_at	A	A1TS	POPTR_0006s16680	POPTR_0006s16680 (11)	scaffold_6:14610903-14612293(+) (11)	NA	NA	NA	AT2G20080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g48570.1	expressed protein	Medtr4g159450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216990.1.S1_at	A	A1TS	POPTR_0006s16670	POPTR_0006s16670 (11)	scaffold_6:14559884-14562221(+) (11)	NA	Q9NRN9	Methyltransferase-like protein 5	AT4G28830.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06730.1	"methyltransferase-like protein 5, putative, expressed"	Medtr1g039970.1	N-6 Adenine-specific DNA methylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216995.1.S1_at	A	A2TS	POPTR_0001s43650	POPTR_0049s00210 (9)//POPTR_0001s43650 (9)	scaffold_1:43878618-43878742(-) (9)//scaffold_49:55302-55426(+) (9)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_3.1	NB-ARC; AAA ATPase AC225526.7 19758-13755 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216995.1.S1_x_at	A	A2TS	POPTR_0001s43650	POPTR_0001s43650 (10)//POPTR_0049s00210 (9)	scaffold_1:43878312-43878770(-) (10)//scaffold_49:55274-55445(+) (9)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_3.1	NB-ARC; AAA ATPase AC225526.7 19758-13755 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216996.1.S1_at	A	A2TS	POPTR_0017s00610	POPTR_0017s00610 (9)//POPTR_0017s04370 (9)	scaffold_17:333779-333934(-) (11)//scaffold_17:3378265-3378420(+) (11)	NA	P84786	Ribosome-inactivating protein charybdin	NA	NA	LOC_Os01g06740.1	"ribosome inactivating protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0017148|negative regulation of translation	GO:0030598|rRNA N-glycosylase activity	NA
PtpAffx.217.1.A1_at	A	A1TS	POPTR_0015s04170	POPTR_0015s04170 (11)	scaffold_15:4209339-4209829(-) (11)	NA	NA	NA	AT3G18170.1	Glycosyltransferase family 61 protein 	LOC_Os02g04250.1	"glycosyltransferase, putative, expressed"	Medtr4g155630.2	Protein of unknown function DUF563 	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.2170.2.S1_s_at	A	A1TS	POPTR_0004s01510	POPTR_0004s01510 (11)	scaffold_4:866483-867065(+) (11)	NA	Q9SB81	Peroxidase 42	AT4G21960.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr8g146760.2	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.217000.1.S1_s_at	A	A2TS	POPTR_0001s39320	POPTR_0001s39320 (11)//POPTR_0001s39360 (11)	scaffold_1:38511257-38511701(-) (11)//scaffold_1:38524225-38524669(-) (11)//scaffold_1:38655846-38656288(+) (11)	NA	C0LGG7	Probable LRR receptor-like serine/threonine-protein kinase At1g53420	AT1G53420.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217003.1.S1_at	A	A1TS	POPTR_0013s09580	POPTR_0013s09580 (11)	scaffold_13:9363171-9363581(+) (11)	NA	Q9C501	Pentatricopeptide repeat-containing protein At1g33350	AT1G33350.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g40750.1	"pentatricopeptide domain containing protein, putative"	Medtr6g070460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217006.1.S1_at	A	A1TS	POPTR_0067s00260	POPTR_0067s00260 (9)	scaffold_67:53529-54247(-) (11)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217010.1.S1_s_at	A	A1TS	POPTR_0031s00400	POPTR_0031s00400 (11)	scaffold_31:213611-213915(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g038790.1	"Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217015.1.S1_x_at	A	A1TS	POPTR_0679s00200	POPTR_0679s00200 (10)	scaffold_679:902-1477(-) (10)	NA	Q93YW8	GDSL esterase/lipase At4g18970	AT4G18970.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g52770.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136390.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217017.1.S1_at	A	A1MS	POPTR_0001s23210	POPTR_0001s23210 (11)	scaffold_1:22492342-22492730(-) (11)	NA	P44747	Tyrosine-specific transport protein 2	AT5G19500.1	Tryptophan/tyrosine permease 	LOC_Os07g46780.1	"tyrosine-specific transport protein, putative, expressed"	Medtr5g095820.1	Aromatic amino acid permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217017.1.S1_s_at	A	A1TS	POPTR_0001s23210	POPTR_0001s23210 (11)	scaffold_1:22492364-22492713(-) (11)	NA	P44747	Tyrosine-specific transport protein 2	AT5G19500.1	Tryptophan/tyrosine permease 	LOC_Os07g46780.1	"tyrosine-specific transport protein, putative, expressed"	Medtr5g095820.1	Aromatic amino acid permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217023.1.S1_at	A	A2TS	POPTR_0098s00230	POPTR_0098s00230 (11)//POPTR_0016s02130 (9)	scaffold_16:1031290-1031422(+) (9)//scaffold_98:12042-12182(+) (11)	NA	NA	NA	AT3G22270.1	Topoisomerase II-associated protein PAT1 	LOC_Os01g56300.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217024.1.S1_at	A	A1TS	POPTR_0001s16820	POPTR_0001s16820 (10)	scaffold_1:13623375-13623846(-) (10)	NA	Q9CRT8	Exportin-T	AT1G72560.3	ARM repeat superfamily protein 	LOC_Os07g42180.1	"exportin 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217025.1.S1_at	A	A1TS	POPTR_0001s16810	POPTR_0001s16810 (11)	scaffold_1:13613375-13614114(-) (11)	NA	Q9CAH1	Putative receptor-like protein kinase At1g72540	AT2G05940.1	Protein kinase superfamily protein 	LOC_Os03g08170.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr8g025080.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217028.1.S1_at	A	A1TS	POPTR_0001s16770	POPTR_0001s16770 (11)	scaffold_1:13543625-13544063(+) (11)	NA	NA	NA	AT1G54120.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g025160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217029.1.S1_at	A	A1TS	POPTR_0001s16720	POPTR_0001s16720 (11)	scaffold_1:13508624-13510771(+) (11)	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr3g016410.1	Stem cell self-renewal protein Piwi 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217030.1.S1_at	A	A1TS	POPTR_0001s16690	POPTR_0001s16690 (11)	scaffold_1:13463539-13463940(-) (11)	NA	NA	NA	AT1G72490.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os07g42290.1	expressed protein	Medtr8g025330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217031.1.S1_at	A	A1TS	POPTR_0001s16670	POPTR_0001s16670 (11)	scaffold_1:13448641-13450013(-) (11)	NA	Q28EW0	Transmembrane protein 87A	AT1G72480.1	Lung seven transmembrane receptor family protein 	LOC_Os09g26830.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr2g007860.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.217033.1.S1_at	A	A1TS	POPTR_0001s16650	POPTR_0001s16650 (11)	scaffold_1:13437209-13437629(+) (11)	NA	Q3E991	Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690	AT3G42880.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g09860.1	expressed protein	Medtr8g132720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217034.1.S1_s_at	A	A1TS	POPTR_0001s16610	POPTR_0001s16610 (11)	scaffold_1:13381523-13384119(-) (11)	NA	P57740	Nuclear pore complex protein Nup107	AT3G14120.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 271 Blast hits to 268 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 69; Plants - 52; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os11g42420.2	"nuclear pore protein 84/107 containing protein, expressed"	Medtr8g025580.1	Nuclear pore protein 84/107 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217035.1.S1_at	A	A1TS	POPTR_0001s16600	POPTR_0001s16600 (11)	scaffold_1:13371796-13372046(-) (11)	NA	NA	NA	AT1G72390.1	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). 	LOC_Os10g25200.1	expressed protein	Medtr8g025570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217035.1.S1_s_at	A	A1TS	POPTR_0001s16600	POPTR_0001s16600 (11)	scaffold_1:13371691-13372158(-) (11)	NA	NA	NA	AT1G72390.1	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). 	LOC_Os10g25200.1	expressed protein	Medtr8g025570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217035.1.S1_x_at	A	A1TS	POPTR_0001s16600	POPTR_0001s16600 (11)	scaffold_1:13371796-13372287(-) (11)	NA	NA	NA	AT1G72390.1	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). 	LOC_Os10g25200.1	expressed protein	Medtr8g025570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217036.1.S1_at	A	A1TS	POPTR_0001s16580	POPTR_0001s16580 (11)	scaffold_1:13345085-13345926(-) (11)	NA	NA	NA	AT3G54620.1	basic leucine zipper 25 	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.217038.1.S1_at	A	A1TS	POPTR_0001s16560	POPTR_0001s16560 (11)	scaffold_1:13332154-13332780(+) (11)	NA	Q9LJX0	ABC transporter B family member 19	AT3G28860.1	ATP binding cassette subfamily B19 	LOC_Os03g08380.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g025810.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.217039.1.S1_at	A	A1MS	POPTR_0001s16540	POPTR_0001s16540 (11)	scaffold_1:13316729-13316881(+) (11)	NA	NA	NA	AT1G17360.1	BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 9949 Blast hits to 7480 proteins in 576 species: Archae - 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants - 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI BLink). 	LOC_Os07g42410.1	expressed protein	Medtr8g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217039.1.S1_x_at	A	A1MS	POPTR_0001s16540	POPTR_0001s16540 (10)	scaffold_1:13316729-13316909(+) (11)	NA	NA	NA	AT1G17360.1	BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 9949 Blast hits to 7480 proteins in 576 species: Archae - 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants - 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI BLink). 	LOC_Os07g42410.1	expressed protein	Medtr8g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21704.1.S1_at	A	A1TS	POPTR_0001s27120	POPTR_0001s27120 (11)	scaffold_1:26068418-26068774(+) (11)	POPTR_0009s06380 (6)	P30182	DNA topoisomerase 2	AT3G23890.2	topoisomerase II 	LOC_Os02g47150.1	"DNA topoisomerase 2, putative, expressed"	Medtr3g030000.1	DNA gyrase B; ; ; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0005524|ATP binding	GO:0005694|chromosome
PtpAffx.217040.1.S1_at	A	A1TS	POPTR_0001s16530	POPTR_0001s16530 (9)	scaffold_1:13312883-13313375(+) (11)	NA	NA	NA	AT3G14172.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g42410.1	expressed protein	Medtr8g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217041.1.S1_at	A	A1TS	POPTR_0001s16500	POPTR_0001s16500 (11)	scaffold_1:13294137-13296982(+) (11)	NA	B1LCI2	Chaperone protein dnaJ	AT3G14200.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g54130.2	"heat shock protein DnaJ, putative, expressed"	Medtr8g025850.2	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.217042.1.S1_at	A	A1TS	POPTR_0001s16490	POPTR_0001s16490 (11)	scaffold_1:13290244-13291046(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g24280.1	"transposon protein, putative, unclassified"	Medtr1g105680.1	"transposase related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217044.1.S1_at	A	A1TS	POPTR_0001s16480	POPTR_0001s16480 (11)	scaffold_1:13269303-13270431(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217045.1.S1_at	A	A1TS	POPTR_0001s16470	POPTR_0001s16470 (11)	scaffold_1:13254076-13254418(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217046.1.S1_at	A	A1TS	POPTR_0001s16460	POPTR_0001s16460 (11)	scaffold_1:13242043-13242625(+) (11)	NA	NA	NA	AT1G72430.1	SAUR-like auxin-responsive protein family  	LOC_Os08g35110.1	"OsSAUR33 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g025960.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217046.1.S1_x_at	A	A1TS	POPTR_0001s16460	POPTR_0001s16460 (11)	scaffold_1:13242043-13242625(+) (11)	NA	NA	NA	AT1G72430.1	SAUR-like auxin-responsive protein family  	LOC_Os08g35110.1	"OsSAUR33 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g025960.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217047.1.S1_at	A	A1TS	POPTR_0001s16420	POPTR_0001s16420 (10)	scaffold_1:13222881-13223747(+) (10)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217048.1.S1_at	A	A1TS	POPTR_0001s16410	POPTR_0001s16410 (11)	scaffold_1:13195403-13196835(+) (11)	NA	NA	NA	AT2G01080.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os09g26480.1	conserved hypothetical protein	Medtr2g007950.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.217049.1.S1_at	A	A1TS	POPTR_0001s16380	POPTR_0001s16380 (11)	scaffold_1:13163164-13163362(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217050.1.S1_at	A	A1TS	POPTR_0001s16360	POPTR_0001s16360 (11)	scaffold_1:13150328-13150600(+) (11)	NA	Q54I81	Translation initiation factor eIF-2B subunit alpha	AT1G53900.1	Eukaryotic translation initiation factor 2B (eIF-2B) family protein 	LOC_Os12g31380.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr8g026500.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.217050.1.S1_s_at	A	A1TS	POPTR_0001s16360	POPTR_0001s16360 (11)	scaffold_1:13150214-13150724(+) (11)	NA	Q54I81	Translation initiation factor eIF-2B subunit alpha	AT1G53900.1	Eukaryotic translation initiation factor 2B (eIF-2B) family protein 	LOC_Os12g31380.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr8g026500.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.217052.1.S1_at	A	A1TS	POPTR_0001s16320	POPTR_0001s16320 (11)	scaffold_1:13126525-13128154(-) (11)	NA	NA	NA	AT1G53860.1	Remorin family protein 	LOC_Os11g40210.1	"remorin C-terminal domain containing protein, putative, expressed"	Medtr8g026600.1	remorin family protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217053.1.S1_at	A	A1TS	POPTR_0001s16300	POPTR_0001s16300 (11)	scaffold_1:13102602-13102770(+) (11)	NA	P52894	Alanine aminotransferase 2	AT1G72330.1	alanine aminotransferase 2 	LOC_Os07g42600.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr8g026620.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.217054.1.S1_at	A	A1MS	POPTR_0001s30630	POPTR_0001s30630 (11)	scaffold_1:29118363-29118567(-) (11)	NA	Q8L7W8	Alpha-L-fucosidase 2	AT4G34260.1	"1,2-alpha-L-fucosidases "	LOC_Os03g17110.1	"transposon protein, putative, CACTA, En/Spm sub-class"	Medtr8g129740.1	"Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217055.1.S1_at	A	A1MS	POPTR_0010s25130	POPTR_0010s25130 (11)	scaffold_10:20964784-20965650(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.1	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.217059.1.S1_at	A	A1MS	POPTR_0013s06570	POPTR_0013s06570 (11)	scaffold_13:5225502-5225945(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g083180.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21706.1.S1_at	A	A1TS	POPTR_0010s24670	POPTR_0010s24670 (11)	scaffold_10:20756456-20757954(+) (11)	NA	NA	NA	AT5G04750.1	"F1F0-ATPase inhibitor protein, putative "	LOC_Os02g33070.1	expressed protein	AC233577_44.1	hypothetical protein AC233577.5 201575-203831 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217060.1.S1_at	A	A1TS	POPTR_0008s16960	POPTR_0008s16960 (11)	scaffold_8:11401949-11402148(+) (11)	NA	NA	NA	AT3G07300.2	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os10g25320.3	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217060.1.S1_x_at	A	A1TS	POPTR_0008s16960	POPTR_0008s16960 (11)	scaffold_8:11401864-11402205(+) (11)	NA	NA	NA	AT3G07300.2	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os10g25320.3	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217062.1.S1_at	A	A1TS	POPTR_0001s43600	POPTR_0001s43600 (9)	scaffold_1:43803850-43803965(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr3g083420.1	hypothetical protein 	NA	GO:0005515|protein binding	NA
PtpAffx.217062.1.S1_x_at	A	A1TS	POPTR_0001s43600	POPTR_0001s43600 (9)	scaffold_1:43803633-43804014(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr3g083420.1	hypothetical protein 	NA	GO:0005515|protein binding	NA
PtpAffx.217063.1.S1_s_at	A	A2TS	POPTR_0011s07870	POPTR_0012s03180 (11)//POPTR_0011s07870 (11)	scaffold_11:8765616-8765786(-) (11)//scaffold_12:2524446-2524616(-) (11)	POPTR_0011s07830 (8)	Q2EF88	Metal-nicotianamine transporter YSL3	AT5G53550.2	YELLOW STRIPE like 3 	LOC_Os04g45860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g123340.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217069.1.S1_at	A	A1TS	POPTR_0026s00260	POPTR_0026s00260 (11)	scaffold_26:335057-335240(+) (11)	NA	O22775	Putative glycosyltransferase 2	AT4G02500.1	UDP-xylosyltransferase 2 	LOC_Os03g18820.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
PtpAffx.217078.1.S1_s_at	A	A1TS	POPTR_0026s00200	POPTR_0026s00200 (11)	scaffold_26:48875-49455(-) (11)	NA	Q9LUS8	Probable protein phosphatase 2C 40	AT3G16560.1	Protein phosphatase 2C family protein 	LOC_Os04g33080.3	"protein phosphatase 2C, putative, expressed"	Medtr8g138810.1	Site-specific DNA-methyltransferase (cytosine-N4-specific); Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217079.1.S1_at	A	A1TS	POPTR_0006s16920	POPTR_0006s16920 (11)	scaffold_6:14776394-14784875(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217083.1.S1_s_at	A	A2TS	POPTR_0001s27290	POPTR_0001s27290 (11)//POPTR_0001s27270 (9)	scaffold_1:26165109-26165333(+) (9)//scaffold_1:26180115-26180406(+) (11)	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217091.1.S1_at	A	A1TS	POPTR_0016s03960	POPTR_0016s03960 (11)	scaffold_16:2218409-2218703(+) (11)	NA	NA	NA	AT3G50170.1	Plant protein of unknown function (DUF247) 	LOC_Os11g17720.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093520.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217091.1.S1_s_at	A	A3TS	POPTR_0016s03920	POPTR_1686s00200 (11)//POPTR_0016s03920 (11)//POPTR_0016s03960 (11)	scaffold_16:2188439-2188691(+) (11)//scaffold_16:2218296-2218548(+) (11)//scaffold_1686:3370-3622(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38380.1	plant protein of unknown function domain containing protein	Medtr7g067490.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217095.1.S1_s_at	A	A4TS	POPTR_0008s21190	POPTR_0008s22710 (11)//POPTR_0008s21190 (11)//POPTR_0008s22720 (11)//POPTR_0008s21210 (11)	scaffold_8:15401466-15401678(-) (11)//scaffold_8:15413151-15413363(-) (11)//scaffold_8:17451991-17452203(+) (11)//scaffold_8:17501979-17502191(+) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217096.1.S1_at	A	A1MS	POPTR_0008s21210	POPTR_0008s21210 (11)	scaffold_8:15408669-15408965(-) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21710.1.S1_s_at	A	A1TS	POPTR_0013s00700	POPTR_0013s00700 (11)	scaffold_13:344456-344609(+) (11)	NA	O48920	ADP-ribosylation factor	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.21710.1.S1_x_at	A	A1TS	POPTR_0013s00700	POPTR_0013s00700 (11)	scaffold_13:337866-344538(+) (11)	NA	O48920	ADP-ribosylation factor	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.21710.3.A1_a_at	A	A1TS	POPTR_0005s00920	POPTR_0005s00920 (11)	scaffold_5:435974-436116(-) (11)	NA	P51823	ADP-ribosylation factor 2	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os05g41060.1	"ADP-ribosylation factor, putative, expressed"	Medtr1g106180.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.21710.3.A1_at	A	A1TS	POPTR_0005s00920	POPTR_0005s00920 (10)	scaffold_5:435895-436138(-) (10)	NA	P51823	ADP-ribosylation factor 2	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os05g41060.1	"ADP-ribosylation factor, putative, expressed"	Medtr1g106180.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.21710.5.S1_at	A	A1TS	POPTR_0013s00690	POPTR_0013s00690 (11)	scaffold_13:340316-340644(+) (11)	NA	O48920	ADP-ribosylation factor	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.217102.1.S1_s_at	A	A1TS	POPTR_0008s15130	POPTR_0008s15130 (11)	scaffold_8:10120189-10120607(-) (11)	NA	Q43077	Primary amine oxidase	AT1G31690.1	Copper amine oxidase family protein 	LOC_Os06g23114.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr1g132560.1	Copper amine oxidase; ; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.217106.1.S1_x_at	A	A1TS	POPTR_0016s11390	POPTR_0016s11390 (11)	scaffold_16:10196151-10196476(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217107.1.S1_at	A	A1TS	POPTR_0016s11365	POPTR_0016s11365 (11)	scaffold_16:10175532-10177789(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217108.1.S1_at	A	A1TS	POPTR_0016s11360	POPTR_0016s11360 (11)	scaffold_16:10158929-10160747(-) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G03330.2	Cysteine proteinases superfamily protein 	LOC_Os03g64219.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217109.1.S1_at	A	A1TS	POPTR_0016s11350	POPTR_0016s11350 (11)	scaffold_16:10157257-10157788(+) (11)	NA	O23875	Transcription factor PCF1	AT3G47620.1	"TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 "	LOC_Os04g11830.1	"TCP family transcription factor, putative, expressed"	Medtr1g076470.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217112.1.S1_at	A	A1TS	POPTR_0016s11330	POPTR_0016s11330 (10)	scaffold_16:10096104-10096484(-) (10)	NA	NA	NA	NA	NA	LOC_Os06g25820.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.217114.1.S1_at	A	A1TS	POPTR_0016s11310	POPTR_0016s11310 (11)	scaffold_16:10008393-10009395(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217117.1.S1_at	A	A2TS	POPTR_0004s02820	POPTR_0004s02820 (10)//POPTR_0004s02790 (9)	scaffold_4:1848023-1848099(+) (9)//scaffold_4:1865169-1865245(+) (10)	POPTR_0972s00200 (7)	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217117.1.S1_s_at	A	A2TS	POPTR_0004s02820	POPTR_0972s00200 (11)//POPTR_0004s02820 (11)	scaffold_4:1865280-1865591(+) (11)//scaffold_972:2855-3166(-) (11)	POPTR_0004s02790 (8)	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.21712.1.A1_at	A	A1TS	POPTR_0016s06090	POPTR_0016s06090 (11)	scaffold_16:4053222-4053431(-) (11)	POPTR_0016s06080 (7)	P13240	Disease resistance response protein 206	AT1G58170.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	Medtr7g076490.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217121.1.S1_at	A	A1TS	POPTR_0015s12150	POPTR_0015s12150 (10)	scaffold_15:12543631-12544555(+) (10)	NA	P42762	"ERD1 protein, chloroplastic"	AT5G51070.1	Clp ATPase 	LOC_Os02g32520.1	"ERD1 protein, chloroplast precursor, putative, expressed"	Medtr3g151610.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217122.1.S1_at	A	A1TS	POPTR_0002s02790	POPTR_0002s02790 (10)	scaffold_2:1652579-1653269(+) (9)//scaffold_2:1694281-1694955(+) (11)	POPTR_0002s02730 (8)//POPTR_0002s02800 (8)//POPTR_0002s02740 (8)	O65782	Cytochrome P450 83B1	AT4G31500.1	"cytochrome P450, family 83, subfamily B, polypeptide 1 "	LOC_Os03g63310.1	"cytochrome P450 71E1, putative, expressed"	Medtr1g028100.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.217123.1.S1_s_at	A	A1TS	POPTR_0008s00440	POPTR_0008s00440 (11)	scaffold_8:171647-172688(+) (11)	NA	NA	NA	AT1G78915.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g18720.1	"tetratricopeptide repeat containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217126.1.S1_at	A	A1TS	POPTR_0004s04850	POPTR_0004s04850 (11)	scaffold_4:3605234-3605360(+) (11)	NA	O64773	Probable CCR4-associated factor 1 homolog 5	AT1G61470.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os09g24990.2	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.217126.1.S1_s_at	A	A1TS	POPTR_0004s04850	POPTR_0004s04850 (11)	scaffold_4:3605040-3605230(+) (11)	NA	O64773	Probable CCR4-associated factor 1 homolog 5	AT1G61470.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os09g24990.2	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.217129.1.S1_s_at	A	A1TS	POPTR_0004s17700	POPTR_0004s17700 (11)	scaffold_320:16003-16215(-) (11)//scaffold_4:17788810-17789022(+) (11)	NA	NA	NA	AT4G34880.1	Amidase family protein 	LOC_Os06g16030.1	"amidase family protein, putative, expressed"	Medtr4g147350.1	Amidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217134.1.S1_s_at	A	A3TS	POPTR_0017s01780	POPTR_0017s01780 (11)//POPTR_0017s01820 (10)//POPTR_0017s01790 (10)	scaffold_17:1297515-1297831(-) (11)//scaffold_17:1309550-1309879(-) (11)//scaffold_17:1326021-1335281(-) (11)//scaffold_17:1334952-1335155(-) (10)	NA	Q54GU0	Putative transporter arsB	AT1G02260.1	Divalent ion symporter 	LOC_Os10g39980.1	expressed protein	Medtr8g039530.1	Citrate transporter 	GO:0015746|citrate transport	GO:0015137|citrate transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.217135.1.S1_s_at	A	A1TS	POPTR_0017s01800	POPTR_0017s01800 (11)	scaffold_17:1324000-1324038(-) (11)	NA	NA	NA	AT1G02260.1	Divalent ion symporter 	LOC_Os03g05390.6	"Citrate transporter protein, putative, expressed"	Medtr8g039530.1	Citrate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217137.1.S1_s_at	A	A1TS	POPTR_0013s11260	POPTR_0013s11260 (11)	scaffold_13:11931639-11931819(-) (11)	NA	Q9LEQ3	Putative cyclic nucleotide-gated ion channel 18	AT5G14870.1	cyclic nucleotide-gated channel 18 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.217139.1.S1_at	A	A1TS	POPTR_0689s00200	POPTR_0689s00200 (10)	scaffold_689:1261-1817(+) (10)	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr7g099470.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217140.1.S1_x_at	A	A1MS	POPTR_0002s26300	POPTR_0002s26300 (9)	scaffold_2:23275255-23275882(+) (9)//scaffold_2:23292698-23293325(-) (9)	NA	P34795	"Glucose-6-phosphate isomerase, cytosolic"	AT5G42740.1	Sugar isomerase (SIS) family protein 	LOC_Os06g14510.3	"glucose-6-phosphate isomerase, putative, expressed"	Medtr6g009990.1	Phosphoglucose isomerase (PGI) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217141.1.S1_s_at	A	A1TS	POPTR_0307s00200	POPTR_0307s00200 (10)	scaffold_307:3597-3630(+) (10)	NA	Q94C27	F-box protein At1g70590	AT1G70590.1	F-box family protein 	LOC_Os04g40030.1	"OsFBO17 - F-box and other domain containing protein, expressed"	Medtr5g034530.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217141.1.S1_x_at	A	A1TS	POPTR_0307s00200	POPTR_0307s00200 (11)	scaffold_307:3597-4076(+) (11)	NA	Q94C27	F-box protein At1g70590	AT1G70590.1	F-box family protein 	LOC_Os04g40030.1	"OsFBO17 - F-box and other domain containing protein, expressed"	Medtr5g034530.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217143.1.S1_s_at	A	A1TS	POPTR_0016s03330	POPTR_0016s03330 (11)	scaffold_16:1728878-1729137(-) (11)//scaffold_3103:76-335(-) (11)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.217146.1.S1_x_at	A	A1TS	POPTR_0015s00355	POPTR_0015s00355 (11)	scaffold_15:190686-191100(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217162.1.S1_at	A	A1MS	POPTR_2221s00200	POPTR_2221s00200 (11)	scaffold_2221:2681-3076(-) (11)	NA	NA	NA	AT1G58190.2	receptor like protein 9 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC233100_77.1	Leucine-rich repeat AC233100.6 337700-336910 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217164.1.S1_at	A	A1TS	POPTR_0032s00230	POPTR_0032s00230 (11)	scaffold_32:169432-169843(-) (11)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT1G52080.1	actin binding protein family 	LOC_Os05g09380.3	"AR791, putative, expressed"	Medtr2g121920.1	AR791; actin binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217167.1.S1_at	A	A1TS	POPTR_0032s00195	POPTR_0032s00195 (11)	scaffold_32:547-788(+) (11)//scaffold_6:14865614-14865855(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217170.1.S1_at	A	A1TS	POPTR_0006s16980	POPTR_0006s16980 (11)	scaffold_6:15033067-15034284(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217182.1.S1_at	A	A1TS	POPTR_0014s18240	POPTR_0014s18240 (11)	scaffold_14:15114319-15114540(+) (11)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr3g159470.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217185.1.S1_at	A	A1TS	POPTR_0912s00200	POPTR_0912s00200 (11)	scaffold_912:7717-8255(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217186.1.S1_s_at	A	A2TS	POPTR_0001s07340	POPTR_0001s07340 (11)//POPTR_0003s18880 (11)	scaffold_1:5522128-5522454(+) (11)//scaffold_3:17794046-17794359(-) (11)	NA	Q5ZLT0	Exportin-7	AT5G06120.2	ARM repeat superfamily protein 	LOC_Os03g42050.1	"exportin-7-A, putative, expressed"	Medtr3g163590.1	"Exportin-7-B, related "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.217188.1.S1_at	A	A1TS	POPTR_0018s01410	POPTR_0018s01410 (11)	scaffold_18:1354578-1354912(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217191.1.S1_at	A	A1TS	POPTR_0004s22390	POPTR_0004s22390 (11)	scaffold_4:21314032-21315629(+) (11)	NA	Q9ZUU9	ABC transporter G family member 3	AT2G28070.1	ABC-2 type transporter family protein 	LOC_Os03g64200.1	"ABC-2 type transporter, putative, expressed"	AC235487_18.1	ABC transporter related AC235487.1 100187-95222 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.217192.1.S1_at	A	A1TS	POPTR_0004s22400	POPTR_0004s22400 (11)	scaffold_4:21317522-21318058(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT2G36970.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os10g30560.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g111140.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217193.1.S1_at	A	A1TS	POPTR_0004s22430	POPTR_0004s22430 (11)	scaffold_4:21335344-21335451(+) (11)	NA	NA	NA	AT3G45020.1	Ribosomal L18p/L5e family protein 	LOC_Os09g37740.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr7g096680.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217193.1.S1_s_at	A	A1TS	POPTR_0004s22430	POPTR_0004s22430 (11)	scaffold_4:21335077-21335317(+) (11)	NA	NA	NA	AT3G45020.1	Ribosomal L18p/L5e family protein 	LOC_Os09g37740.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr7g096680.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217194.1.S1_at	A	A1TS	POPTR_0004s22440	POPTR_0004s22440 (11)	scaffold_4:21342114-21343284(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217195.1.S1_s_at	A	A1TS	POPTR_0004s22450	POPTR_0004s22450 (11)	scaffold_4:21344041-21344890(-) (11)	NA	NA	NA	AT5G60800.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g05750.1	"heavy-metal-associated domain-containing protein, putative, expressed"	AC235487_8.1	Heavy metal transport/detoxification protein AC235487.1 51831-53181 H EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.217196.1.S1_at	A	A1TS	POPTR_0004s22460	POPTR_0004s22460 (11)	scaffold_4:21351790-21352219(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217197.1.S1_at	A	A1TS	POPTR_0004s22510	POPTR_0004s22510 (11)	scaffold_4:21386094-21386672(+) (11)	NA	NA	NA	AT2G28105.1	"CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os10g39830.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217198.1.S1_at	A	A1TS	POPTR_0004s22530	POPTR_0004s22530 (11)	scaffold_4:21393891-21396731(-) (11)	NA	Q9FFB3	Vacuolar protein sorting-associated protein 24 homolog 1	AT5G22950.1	SNF7 family protein 	LOC_Os03g01810.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	GO:0015031|protein transport	NA	NA
PtpAffx.217199.1.S1_at	A	A1MS	POPTR_0004s22580	POPTR_0004s22580 (11)	scaffold_4:21460440-21460869(+) (11)	NA	NA	NA	AT2G28150.1	Domain of unknown function (DUF966) 	LOC_Os03g48600.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g076240.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217200.1.S1_at	A	A1TS	POPTR_0004s22590	POPTR_0004s22590 (11)	scaffold_4:21464143-21465618(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217201.1.S1_at	A	A1TS	POPTR_0004s22600	POPTR_0004s22600 (11)	scaffold_4:21469037-21469744(-) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.217202.1.S1_at	A	A1MS	POPTR_0004s22610	POPTR_0004s22610 (10)	scaffold_4:21481166-21481795(-) (10)	NA	Q8VE18	Protein SMG8	NA	NA	LOC_Os02g57780.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217203.1.S1_at	A	A1TS	POPTR_0004s22640	POPTR_0004s22640 (11)	scaffold_11:811692-811865(-) (11)//scaffold_4:21494496-21494669(-) (11)	NA	Q7PC88	ABC transporter G family member 31	AT2G29940.1	pleiotropic drug resistance 3 	LOC_Os06g36090.2	"ABC-2 type transporter, putative, expressed"	Medtr5g078790.1	AAA ATPase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217203.1.S1_x_at	A	A1TS	POPTR_0004s22640	POPTR_0004s22640 (11)	scaffold_11:811709-811865(-) (11)//scaffold_4:21494513-21494669(-) (11)	NA	Q7PC88	ABC transporter G family member 31	AT2G29940.1	pleiotropic drug resistance 3 	LOC_Os06g36090.2	"ABC-2 type transporter, putative, expressed"	Medtr5g078790.1	AAA ATPase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217205.1.S1_at	A	A1TS	POPTR_0004s22720	POPTR_0004s22720 (11)	scaffold_4:21561916-21564580(-) (11)	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G27980.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g01170.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217206.1.S1_at	A	A1TS	POPTR_0004s22730	POPTR_0004s22730 (9)	scaffold_4:21590910-21592287(+) (9)	NA	NA	NA	AT2G27950.1	Ring/U-Box superfamily protein 	LOC_Os09g39690.1	"protein binding protein, putative, expressed"	AC235664_10.1	"Zinc finger, RING-type AC235664.1 36110-32388 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217208.1.S1_at	A	A1TS	POPTR_0004s22750	POPTR_0004s22750 (11)	scaffold_4:21614880-21615364(-) (11)	NA	Q9SJZ3	"Pentatricopeptide repeat-containing protein At2g22410, mitochondrial"	AT2G22410.1	SLOW GROWTH 1 	LOC_Os12g13110.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217209.1.S1_at	A	A1TS	POPTR_0004s22760	POPTR_0004s22760 (11)	scaffold_4:21622036-21622690(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217210.1.S1_at	A	A2TS	POPTR_0004s22790	POPTR_0004s22790 (11)//POPTR_0004s22770 (10)	scaffold_4:21643518-21645350(-) (10)//scaffold_4:21657933-21661575(-) (11)	NA	Q7XQP4	Serine/threonine-protein kinase SAPK7	AT1G60940.2	SNF1-related protein kinase 2.10 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217210.1.S1_x_at	A	A2TS	POPTR_0004s22790	POPTR_0004s22790 (11)//POPTR_0004s22770 (10)	scaffold_4:21643518-21645350(-) (10)//scaffold_4:21657933-21661575(-) (11)	NA	Q7XQP4	Serine/threonine-protein kinase SAPK7	AT1G60940.2	SNF1-related protein kinase 2.10 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217211.1.S1_at	A	A1TS	POPTR_0004s22800	POPTR_0004s22800 (11)	scaffold_4:21675154-21675266(+) (11)	NA	Q9HD45	Transmembrane 9 superfamily member 3	AT1G10950.1	transmembrane nine 1 	LOC_Os11g07910.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr4g137290.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.217211.1.S1_s_at	A	A1TS	POPTR_0004s22800	POPTR_0004s22800 (11)	scaffold_4:21674856-21675225(+) (11)	NA	Q9HD45	Transmembrane 9 superfamily member 3	AT1G10950.1	transmembrane nine 1 	LOC_Os11g07910.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr4g137290.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.217212.1.S1_at	A	A1TS	POPTR_0004s22820	POPTR_0004s22820 (11)	scaffold_4:21679436-21681422(-) (11)	NA	O23693	MLO-like protein 4	AT1G11000.1	Seven transmembrane MLO family protein 	LOC_Os11g07912.1	"MLO domain containing protein, putative, expressed"	Medtr5g022330.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.217213.1.S1_at	A	A1MS	POPTR_0004s22850	POPTR_0004s22850 (11)	scaffold_4:21695591-21703295(+) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT4G20020.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os11g11020.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g006280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217213.1.S1_s_at	A	A1MS	POPTR_0004s22850	POPTR_0004s22850 (11)	scaffold_4:21695190-21703255(+) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT4G20020.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os11g11020.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g006280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217214.1.S1_s_at	A	A1TS	POPTR_0004s22860	POPTR_0004s22860 (11)	scaffold_4:21706229-21706822(+) (11)	NA	Q9T053	Phospholipase D gamma 1	AT4G11850.1	phospholipase D gamma 1 	LOC_Os03g62410.2	"phospholipase D, putative, expressed"	Medtr4g137270.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217215.1.S1_at	A	A1MS	POPTR_0004s22845	POPTR_0004s22845 (9)	scaffold_4:21696419-21697769(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217216.1.S1_s_at	A	A1TS	POPTR_0004s22830	POPTR_0004s22830 (11)	scaffold_4:21694681-21694907(+) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT4G20020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast hits to 16023 proteins in 1033 species: Archae - 4; Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants - 3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI BLink). 	LOC_Os11g11020.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g006280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217218.1.S1_at	A	A1TS	POPTR_0004s22880	POPTR_0004s22880 (11)	scaffold_4:21723963-21723997(+) (11)	NA	Q8W3M7	Uncharacterized membrane protein At4g06598	AT1G58110.2	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os12g09250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.217218.1.S1_s_at	A	A1TS	POPTR_0004s22880	POPTR_0004s22880 (11)	scaffold_4:21723576-21723887(+) (11)	NA	Q8W3M7	Uncharacterized membrane protein At4g06598	AT1G58110.2	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os12g09250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.217218.1.S1_x_at	A	A1TS	POPTR_0004s22880	POPTR_0004s22880 (11)	scaffold_4:21723529-21723997(+) (11)	NA	Q8W3M7	Uncharacterized membrane protein At4g06598	AT1G58110.2	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os12g09250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.217219.1.S1_at	A	A1TS	POPTR_0004s22890	POPTR_0004s22890 (11)	scaffold_4:21727383-21728402(-) (11)	NA	O04500	COBRA-like protein 6	AT1G09790.1	COBRA-like protein 6 precursor 	LOC_Os07g41310.1	"COBRA, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217220.1.S1_s_at	A	A2TS	POPTR_0004s22950	POPTR_0004s22950 (11)//POPTR_1461s00200 (11)	scaffold_1461:3358-3503(-) (11)//scaffold_4:21780980-21781125(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.217220.1.S1_x_at	A	A1TS	POPTR_1461s00200	POPTR_1461s00200 (11)	scaffold_1461:3244-3620(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.217222.1.S1_at	A	A1TS	POPTR_0004s22970	POPTR_0004s22970 (11)	scaffold_4:21808648-21808824(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217229.1.S1_at	A	A1TS	POPTR_0005s01060	POPTR_0005s01060 (11)	scaffold_5:567704-567941(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38190.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217229.1.S1_x_at	A	A1TS	POPTR_0005s01060	POPTR_0005s01060 (11)	scaffold_5:567640-568033(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38190.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217231.1.S1_at	A	A1MS	POPTR_0008s16330	POPTR_0008s16330 (11)	scaffold_8:10943273-10943323(-) (11)	NA	Q86134	Nucleoprotein	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217231.1.S1_s_at	A	A1TS	POPTR_0008s16330	POPTR_0008s16330 (11)	scaffold_8:10943364-10943872(-) (11)	NA	Q86134	Nucleoprotein	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217232.1.S1_at	A	A1TS	POPTR_0006s17780	POPTR_0006s17780 (11)	scaffold_6:15956757-15958361(+) (11)	NA	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217232.1.S1_x_at	A	A1TS	POPTR_0006s17780	POPTR_0006s17780 (11)	scaffold_6:15956805-15958361(+) (11)	NA	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217233.1.S1_at	A	A2TS	POPTR_0019s03470	POPTR_1376s00200 (11)//POPTR_0019s03470 (11)	scaffold_1376:2319-2421(-) (11)//scaffold_19:3544011-3544113(+) (11)	NA	P48489	Serine/threonine-protein phosphatase PP1	AT2G39840.1	type one serine/threonine protein phosphatase 4 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.217233.1.S1_x_at	A	A2TS	POPTR_0019s03470	POPTR_1376s00200 (10)//POPTR_0019s03470 (10)	scaffold_1376:2306-2421(-) (10)//scaffold_19:3544011-3544126(+) (10)	NA	P48489	Serine/threonine-protein phosphatase PP1	AT2G39840.1	type one serine/threonine protein phosphatase 4 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.217235.1.S1_at	A	A1TS	POPTR_0018s14940	POPTR_0018s14940 (11)	scaffold_18:14939054-14939888(-) (11)	NA	Q6ZPJ0	Testis-expressed sequence 2 protein	AT1G17820.1	Putative integral membrane protein conserved region (DUF2404) 	LOC_Os02g58110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217235.1.S1_x_at	A	A1TS	POPTR_0018s14940	POPTR_0018s14940 (11)	scaffold_18:14938884-14939915(-) (11)	NA	Q6ZPJ0	Testis-expressed sequence 2 protein	AT1G17820.1	Putative integral membrane protein conserved region (DUF2404) 	LOC_Os02g58110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217236.1.S1_at	A	A1TS	POPTR_0018s14930	POPTR_0018s14930 (11)	scaffold_18:14936330-14936866(+) (11)	NA	Q9LTV8	Pentatricopeptide repeat-containing protein At3g12770	AT3G12770.1	mitochondrial editing factor  22 	LOC_Os06g08660.1	"pentatricopeptide, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217237.1.S1_at	A	A1TS	POPTR_0018s14920	POPTR_0018s14920 (11)	scaffold_18:14932871-14934093(+) (11)	NA	Q42656	Alpha-galactosidase	AT5G08370.1	alpha-galactosidase 2 	LOC_Os10g35110.2	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217238.1.S1_s_at	A	A1TS	POPTR_0018s14910	POPTR_0018s14910 (11)	scaffold_18:14924388-14924742(+) (11)	NA	P26587	Aquaporin TIP3-1	AT1G73190.1	Aquaporin-like superfamily protein 	LOC_Os10g35050.1	"aquaporin protein, putative, expressed"	Medtr6g083850.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.217239.1.S1_at	A	A1TS	POPTR_0018s14890	POPTR_0018s14890 (11)	scaffold_18:14913817-14914544(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217240.1.S1_at	A	A1TS	POPTR_0018s14880	POPTR_0018s14880 (10)	scaffold_18:14907160-14908634(+) (11)	NA	NA	NA	AT5G58210.4	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g42550.1	expressed protein	Medtr6g083870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217241.1.S1_at	A	A1TS	POPTR_0018s14870	POPTR_0018s14870 (11)	scaffold_18:14905165-14905430(-) (11)	NA	Q93ZD7	Magnesium transporter MRS2-4	AT3G58970.1	magnesium transporter 6 	LOC_Os10g39790.2	"CorA-like magnesium transporter protein, putative, expressed"	Medtr4g137240.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217242.1.S1_at	A	A1TS	POPTR_0018s14860	POPTR_0018s14860 (11)	scaffold_18:14902777-14903546(+) (11)	NA	Q2XWK0	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os09g38690.1	"transporter family protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217244.1.S1_at	A	A1TS	POPTR_0018s14830	POPTR_0018s14830 (11)	scaffold_18:14884892-14886569(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT3G13040.2	myb-like HTH transcriptional regulator family protein 	LOC_Os06g49040.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g104840.1	"Peptidase M22, glycoprotease; Homeodomain-related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217245.1.S1_at	A	A1TS	POPTR_0018s14820	POPTR_0018s14820 (11)	scaffold_18:14883567-14883701(+) (11)	NA	NA	NA	AT5G58130.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g04560.1	"marker Xucw84, putative, expressed"	Medtr2g055570.1	"Pyridoxal-dependent decarboxylase; Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217245.1.S1_s_at	A	A1TS	POPTR_0018s14820	POPTR_0018s14820 (11)	scaffold_18:14883319-14883561(+) (11)	NA	NA	NA	AT5G58130.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g04560.1	"marker Xucw84, putative, expressed"	Medtr2g055570.1	"Pyridoxal-dependent decarboxylase; Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217246.1.S1_at	A	A1TS	POPTR_0018s14810	POPTR_0018s14810 (11)	scaffold_18:14880601-14881194(-) (11)	NA	Q9FWS3	Zinc finger CCCH domain-containing protein 16	AT1G75340.2	Zinc finger C-x8-C-x5-C-x3-H type family protein 	NA	NA	Medtr4g107870.1	"Zinc finger, CCCH-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217247.1.S1_at	A	A1TS	POPTR_0018s14800	POPTR_0018s14800 (11)	scaffold_18:14879093-14879896(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217248.1.S1_at	A	A1TS	POPTR_0018s14790	POPTR_0018s14790 (10)	scaffold_18:14868993-14870048(-) (11)	NA	O48809	Leucine-rich repeat extensin-like protein 2	AT1G62440.1	leucine-rich repeat/extensin 2 	LOC_Os02g04540.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g158630.1	"leucine-rich repeat family protein, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.217249.1.S1_at	A	A1TS	POPTR_0018s14780	POPTR_0018s14780 (10)	scaffold_18:14861286-14861329(-) (10)	NA	Q9T091	Vacuolar protein sorting-associated protein 26	AT4G27690.1	vacuolar protein sorting 26B 	LOC_Os11g41130.1	"vacuolar protein sorting-associated protein 26, putative, expressed"	NA	NA	GO:0007034|vacuolar transport	NA	GO:0030904|retromer complex
PtpAffx.217250.1.S1_at	A	A1TS	POPTR_0018s14770	POPTR_0018s14770 (11)	scaffold_18:14856931-14858740(+) (11)	NA	Q0JAA0	Probable protein phosphatase 2C 44	AT4G28400.1	Protein phosphatase 2C family protein 	LOC_Os04g52000.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217251.1.S1_at	A	A1TS	POPTR_0018s14760	POPTR_0018s14760 (11)	scaffold_18:14847447-14848396(-) (11)	NA	P30638	Putative transporter ZK637.1	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os09g38690.1	"transporter family protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.217252.1.S1_at	A	A1TS	POPTR_0018s14750	POPTR_0018s14750 (11)	scaffold_18:14843004-14845025(+) (11)	NA	NA	NA	AT5G58100.1	unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g26984.1	expressed protein	Medtr5g019420.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217253.1.S1_at	A	A1TS	POPTR_0018s14710	POPTR_0018s14710 (11)	scaffold_18:14820764-14821180(-) (11)	NA	NA	NA	AT1G06330.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g55320.1	heavy metal-associated domain containing protein	Medtr7g094270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.217254.1.S1_at	A	A1TS	POPTR_0018s14690	POPTR_0018s14690 (11)	scaffold_18:14812818-14814416(-) (11)	NA	A6MVV9	Chloroplast envelope membrane protein	AT4G31040.1	CemA-like proton extrusion protein-related 	LOC_Os08g12780.4	"chloroplast envelope membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.217255.1.S1_at	A	A1TS	POPTR_0018s14680	POPTR_0018s14680 (11)	scaffold_18:14805822-14806247(-) (11)	NA	Q5Z818	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.217256.1.S1_at	A	A1TS	POPTR_0018s14670	POPTR_0018s14670 (11)	scaffold_18:14797951-14798744(-) (11)	NA	Q9BYJ9	YTH domain family protein 1	AT5G58190.1	evolutionarily conserved C-terminal region 10 	LOC_Os08g44200.1	"ECT5, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217256.1.S1_x_at	A	A1TS	POPTR_0018s14670	POPTR_0018s14670 (11)	scaffold_18:14797951-14800011(-) (11)	NA	Q9BYJ9	YTH domain family protein 1	AT5G58190.1	evolutionarily conserved C-terminal region 10 	LOC_Os08g44200.1	"ECT5, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217257.1.S1_at	A	A1TS	POPTR_0018s14660	POPTR_0018s14660 (11)	scaffold_18:14785017-14785866(-) (11)	NA	Q9LK64	ABC transporter C family member 3	AT3G13080.1	multidrug resistance-associated protein 3 	LOC_Os01g67580.1	"multidrug resistance-associated protein, putative, expressed"	Medtr5g034390.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.217258.1.S1_at	A	A1TS	POPTR_0018s14650	POPTR_0018s14650 (11)	scaffold_18:14781195-14781990(-) (11)	NA	Q7FB56	Putative ABC transporter C family member 15	AT3G13080.1	multidrug resistance-associated protein 3 	LOC_Os01g67580.1	"multidrug resistance-associated protein, putative, expressed"	Medtr5g102340.1	Cyclic peptide transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217259.1.S1_at	A	A1TS	POPTR_0018s14640	POPTR_0018s14640 (11)	scaffold_18:14778910-14779967(+) (11)	NA	Q6MAS9	Glycogen synthase	AT4G18240.1	starch synthase 4 	LOC_Os01g52250.4	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.217260.1.S1_at	A	A1MS	POPTR_0018s14630	POPTR_0018s14630 (11)	scaffold_18:14765263-14766719(-) (11)	NA	NA	NA	AT2G07360.1	SH3 domain-containing protein 	LOC_Os03g15900.2	"SH3 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217260.1.S1_s_at	A	A1TS	POPTR_0018s14630	POPTR_0018s14630 (9)	scaffold_18:14765422-14766679(-) (11)	NA	NA	NA	AT2G07360.1	SH3 domain-containing protein 	LOC_Os03g15900.2	"SH3 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217261.1.S1_at	A	A1TS	POPTR_0018s14580	POPTR_0018s14580 (10)	scaffold_18:14726445-14726754(+) (10)	NA	NA	NA	AT2G07170.1	ARM repeat superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217262.1.S1_at	A	A1TS	POPTR_0018s14570	POPTR_0018s14570 (11)	scaffold_18:14724213-14724833(+) (11)	NA	NA	NA	AT1G01490.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g56570.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g020880.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.217264.1.S1_at	A	A1TS	POPTR_0018s14540	POPTR_0018s14540 (11)	scaffold_18:14704783-14705217(+) (11)	NA	NA	NA	AT1G04645.1	Plant self-incompatibility protein S1 family 	NA	NA	AC233657_27.1	Plant self-incompatibility S1 AC233657.1 148095-148529 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217265.1.S1_at	A	A1TS	POPTR_0018s14520	POPTR_0018s14520 (10)	scaffold_18:14698992-14699564(+) (10)	POPTR_0126s00210 (7)	Q8VYA3	Wall-associated receptor kinase-like 10	AT1G79680.1	WALL ASSOCIATED KINASE (WAK)-LIKE 10 	LOC_Os05g04460.1	OsWAK56 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217266.1.S1_s_at	A	A1TS	POPTR_0018s14500	POPTR_0018s14500 (11)	scaffold_18:14685328-14686984(-) (11)	NA	Q9C9L5	Wall-associated receptor kinase-like 9	AT1G69730.1	Wall-associated kinase family protein 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	AC147501_3.1	Tyrosine protein kinase AC147501.9 8841-5950 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217268.1.S1_at	A	A1TS	POPTR_0126s00200	POPTR_0126s00200 (9)	scaffold_126:3868-4207(-) (11)	NA	Q8VYA3	Wall-associated receptor kinase-like 10	AT1G79680.1	WALL ASSOCIATED KINASE (WAK)-LIKE 10 	LOC_Os04g51050.1	"OsWAK53b - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217269.1.S1_s_at	A	A1TS	POPTR_0018s14460	POPTR_0018s14460 (11)	scaffold_18:14651828-14654355(+) (11)	POPTR_0006s07850 (7)	O14053	Uncharacterized WD repeat-containing protein C1672.07	AT4G04940.1	transducin family protein / WD-40 repeat family protein 	LOC_Os06g43690.1	"WD repeat-containing protein, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.217271.1.S1_at	A	A1TS	POPTR_0018s14470	POPTR_0018s14470 (11)	scaffold_18:14657702-14658126(-) (11)	NA	NA	NA	AT5G12060.1	Plant self-incompatibility protein S1 family 	NA	NA	Medtr8g094010.1	Plant self-incompatibility S1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217272.1.S1_at	A	A1MS	POPTR_0018s14460	POPTR_0018s14460 (9)	scaffold_18:14656152-14656878(+) (9)	NA	O14053	Uncharacterized WD repeat-containing protein C1672.07	AT4G04940.1	transducin family protein / WD-40 repeat family protein 	LOC_Os06g43690.1	"WD repeat-containing protein, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.217273.1.S1_s_at	A	A1TS	POPTR_0012s10980	POPTR_0012s10980 (11)	scaffold_12:11612337-11612371(+) (11)//scaffold_13:13809806-13809840(+) (11)//scaffold_15:6527548-6527582(-) (11)//scaffold_18:14479368-14479402(-) (11)//scaffold_18:14628262-14628296(+) (11)//scaffold_8:12501191-12501225(-) (11)	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217275.1.S1_at	A	A1TS	POPTR_0018s14420	POPTR_0018s14420 (10)	scaffold_18:14624573-14626620(+) (10)	NA	NA	NA	AT2G19080.1	metaxin-related 	LOC_Os06g07160.1	expressed protein	Medtr8g129480.1	"glutathione S-transferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217277.1.S1_at	A	A1TS	POPTR_0018s14390	POPTR_0018s14390 (11)	scaffold_18:14609710-14609940(-) (11)	NA	C0LGU0	Probable LRR receptor-like serine/threonine-protein kinase RLK	AT5G35390.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g45240.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr4g161170.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217277.1.S1_s_at	A	A1TS	POPTR_0018s14390	POPTR_0018s14390 (11)	scaffold_18:14609934-14610236(-) (11)	NA	C0LGU0	Probable LRR receptor-like serine/threonine-protein kinase RLK	AT5G35390.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g45240.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr4g161170.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217279.1.S1_at	A	A1TS	POPTR_0018s14360	POPTR_0018s14360 (11)	scaffold_18:14596279-14596806(+) (11)	NA	Q9M2A1	Pentatricopeptide repeat-containing protein At3g42630	AT3G42630.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os08g40870.1	"pentatricopeptide repeat protein, putative, expressed"	Medtr5g076940.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217280.1.S1_at	A	A2TS	POPTR_0018s14350	POPTR_0018s14350 (11)//POPTR_0269s00220 (10)	scaffold_18:14581872-14583965(-) (11)//scaffold_269:12625-14719(-) (10)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.217281.1.S1_at	A	A1MS	POPTR_0269s00210	POPTR_0269s00210 (9)	scaffold_269:7154-7695(+) (9)	POPTR_0018s14240 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217282.1.S1_s_at	A	A2TS	POPTR_0018s14250	POPTR_0018s14250 (11)//POPTR_0269s00200 (10)	scaffold_18:14498082-14499741(-) (11)//scaffold_269:3604-5974(+) (10)	NA	B9N843	"Biotin carboxylase 2, chloroplastic"	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.217283.1.S1_s_at	A	A1TS	POPTR_0018s14310	POPTR_0018s14310 (11)	scaffold_18:14553190-14554285(-) (11)	NA	C4LB24	Galactokinase	AT4G16130.1	arabinose kinase 	LOC_Os02g04840.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr1g010200.1	"Glycoside hydrolase, family 10; Galactokinase, glycosyltransferase N-terminal; "	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.217284.1.S1_at	A	A1TS	POPTR_0018s14320	POPTR_0018s14320 (11)	scaffold_18:14562915-14563404(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217285.1.S1_at	A	A1TS	POPTR_0018s14330	POPTR_0018s14330 (11)	scaffold_18:14568712-14568898(+) (11)	NA	Q9K9K5	Arginine decarboxylase	NA	NA	LOC_Os03g63074.3	"Ser/Thr protein phosphatase family protein, expressed"	Medtr4g092740.1	Lysine decarboxylase; 	NA	GO:0003824|catalytic activity	NA
PtpAffx.217286.1.S1_at	A	A1TS	POPTR_0018s14340	POPTR_0018s14340 (11)	scaffold_18:14570855-14572631(-) (11)	NA	NA	NA	AT5G35330.3	methyl-CPG-binding domain protein 02 	LOC_Os09g32090.1	"methyl-binding domain protein MBD, putative, expressed"	Medtr1g111540.1	"Thymidine kinase; Methyl-CpG binding; Zinc finger, CW-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.217288.1.S1_x_at	A	A1TS	POPTR_0018s14190	POPTR_0018s14190 (11)	scaffold_18:14478056-14478247(-) (11)	POPTR_0008s18690 (8)//POPTR_0516s00230 (7)//POPTR_0008s18520 (6)	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24890.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217294.1.S1_at	A	A1TS	POPTR_0004s18650	POPTR_0004s18650 (11)	scaffold_4:18463125-18463623(-) (11)	NA	Q93WU2	Eugenol O-methyltransferase	NA	NA	NA	NA	Medtr5g082580.1	"O-methyltransferase, family 2; Dimerisation "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2173.1.S1_at	A	A1TS	POPTR_0003s21470	POPTR_0003s21470 (11)	scaffold_3:19628055-19628602(+) (11)	NA	P13240	Disease resistance response protein 206	AT1G55210.2	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os12g07580.1	"dirigent, putative, expressed"	Medtr7g076490.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217305.1.S1_at	A	A1TS	POPTR_0009s07970	POPTR_0009s07970 (10)	scaffold_9:7378452-7378887(-) (11)	NA	Q54I36	Dual specificity protein kinase pyk3	AT5G58520.1	Protein kinase superfamily protein 	LOC_Os03g18430.1	"protein kinase, putative, expressed"	Medtr5g080770.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217306.1.S1_s_at	A	A1TS	POPTR_0004s11370	POPTR_0004s11370 (11)	scaffold_4:9996685-9997104(+) (11)	NA	NA	NA	AT3G02300.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os03g40260.1	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr7g014860.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217307.1.S1_at	A	A1TS	POPTR_0004s11350	POPTR_0004s11350 (11)	scaffold_4:9950057-9950817(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217308.1.S1_at	A	A1TS	POPTR_0004s11320	POPTR_0004s11320 (11)	scaffold_4:9919081-9920074(-) (11)	NA	NA	NA	AT5G38880.1	unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - 6; Bacteria - 80; Metazoa - 195; Fungi - 44; Plants - 59; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). 	LOC_Os09g21780.1	expressed protein	Medtr7g015050.1	"IMP dehydrogenase/GMP reductase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217310.1.S1_at	A	A1TS	POPTR_0004s11290	POPTR_0004s11290 (11)	scaffold_4:9899170-9900034(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217312.1.S1_at	A	A1TS	POPTR_0004s11240	POPTR_0004s11240 (11)	scaffold_4:9869709-9869773(+) (11)	NA	Q86KZ2	General transcription factor IIH subunit 2	AT1G05055.1	general transcription factor II H2 	LOC_Os04g42990.1	"suppressor of stem-loop protein 1, putative, expressed"	Medtr7g106470.1	"von Willebrand factor, type A; Zinc finger, C2H2-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.217313.1.S1_at	A	A1TS	POPTR_0004s11220	POPTR_0004s11220 (11)	scaffold_4:9842334-9842982(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217314.1.S1_at	A	A1TS	POPTR_0004s11210	POPTR_0004s11210 (11)	scaffold_4:9830650-9830692(-) (11)	NA	Q9LFV3	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730	AT5G15730.2	Protein kinase superfamily protein 	LOC_Os06g17285.2	"protein kinase, putative, expressed"	Medtr2g096390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217315.1.S1_at	A	A1TS	POPTR_0004s11200	POPTR_0004s11200 (11)	scaffold_4:9798804-9799365(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G30300.1	O-fucosyltransferase family protein 	LOC_Os05g04190.2	"growth regulator related protein, putative, expressed"	Medtr7g015370.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217316.1.S1_at	A	A1TS	POPTR_0004s11150	POPTR_0004s11150 (11)	scaffold_4:9748148-9749214(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217317.1.S1_at	A	A1TS	POPTR_0004s11140	POPTR_0004s11140 (10)	scaffold_4:9738739-9739898(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217318.1.S1_at	A	A1TS	POPTR_0004s11130	POPTR_0004s11130 (9)	scaffold_4:9736871-9737438(+) (11)	NA	Q9LFV5	F-box/kelch-repeat protein At5g15710	AT5G15710.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g57290.1	"OsFBX153 - F-box domain containing protein, expressed"	Medtr7g015440.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217319.1.S1_at	A	A1TS	POPTR_0004s11120	POPTR_0004s11120 (11)	scaffold_4:9725749-9727827(-) (11)	NA	Q7ZVZ7	Abhydrolase domain-containing protein FAM108C1	AT3G30380.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g42730.1	"OsPOP14 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217320.1.S1_at	A	A1TS	POPTR_0004s11100	POPTR_0004s11100 (10)	scaffold_4:9691307-9691422(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT2G37710.1	receptor lectin kinase 	LOC_Os03g15250.1	"lectin-like receptor kinase, putative"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217321.1.S1_at	A	A1TS	POPTR_0004s11070	POPTR_0004s11070 (11)	scaffold_4:9683166-9683672(-) (11)	NA	NA	NA	AT2G40830.3	RING-H2 finger C1A 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217322.1.S1_at	A	A1TS	POPTR_0004s11050	POPTR_0004s11050 (10)	scaffold_4:9666363-9666729(-) (10)	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.2	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr7g015500.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.217323.1.S1_at	A	A1TS	POPTR_0004s11040	POPTR_0004s11040 (11)	scaffold_4:9664007-9664132(+) (11)	NA	Q9BWU0	Kanadaptin	AT5G38840.1	SMAD/FHA domain-containing protein  	LOC_Os06g16430.1	"FHA domain containing protein, putative, expressed"	Medtr7g015550.1	"forkhead-associated domain-containing protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217323.1.S1_s_at	A	A1TS	POPTR_0004s11040	POPTR_0004s11040 (11)	scaffold_4:9663750-9663997(+) (11)	NA	Q9BWU0	Kanadaptin	AT5G38840.1	SMAD/FHA domain-containing protein  	LOC_Os06g16430.1	"FHA domain containing protein, putative, expressed"	Medtr7g015550.1	"forkhead-associated domain-containing protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217324.1.S1_at	A	A1TS	POPTR_0004s11030	POPTR_0004s11030 (11)	scaffold_4:9640810-9641250(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217324.1.S1_x_at	A	A1TS	POPTR_0004s11030	POPTR_0004s11030 (11)	scaffold_4:9640810-9641250(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217326.1.S1_x_at	A	A1TS	POPTR_0062s00210	POPTR_0062s00210 (11)	scaffold_62:26041-26266(+) (11)	NA	NA	NA	AT4G03965.1	RING/U-box superfamily protein 	NA	NA	Medtr8g147420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217327.1.S1_s_at	A	A3TS	POPTR_0004s10920	POPTR_0004s19020 (11)//POPTR_0004s10920 (11)//POPTR_0004s18920 (11)	scaffold_4:9495703-9495927(+) (11)//scaffold_4:18682857-18683081(+) (11)//scaffold_4:18881795-18882019(+) (11)	POPTR_0004s18940 (8)	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g28300.1	"transferase family protein, putative"	Medtr7g073580.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217334.1.S1_at	A	A1TS	POPTR_0004s07500	POPTR_0004s07500 (11)	scaffold_4:6181516-6181677(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217334.1.S1_s_at	A	A1TS	POPTR_0004s07550	POPTR_0004s07550 (11)	scaffold_4:6181674-6182186(+) (11)//scaffold_4:6204181-6204685(+) (11)	NA	NA	NA	AT5G02520.1	CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). 	LOC_Os01g34610.1	expressed protein	Medtr5g040960.1	SANT associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217335.1.S1_s_at	A	A1TS	POPTR_0006s18855	POPTR_0006s18855 (9)	scaffold_6:17592798-17592899(-) (9)	NA	NA	NA	AT5G57690.1	diacylglycerol kinase 4 	LOC_Os08g15090.1	"diacylglycerol kinase catalytic domain family protein, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217337.1.S1_at	A	A1TS	POPTR_0007s08080	POPTR_0007s08080 (9)	scaffold_7:6576700-6577077(-) (9)	NA	Q9SMZ2	Pentatricopeptide repeat-containing protein At4g33170	AT1G16480.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os11g45410.1	conserved hypothetical protein	Medtr3g028620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217339.1.S1_s_at	A	A1TS	POPTR_0007s11810	POPTR_0007s11810 (11)	scaffold_7:12188292-12188513(-) (11)	NA	O80470	GDSL esterase/lipase At2g23540	AT2G23540.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g47210.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g137420.1	hypothetical protein 	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.217341.1.S1_at	A	A1MS	POPTR_0007s11800	POPTR_0007s11800 (11)	scaffold_7:12185810-12185971(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217345.1.S1_s_at	A	A3TS	POPTR_0004s00940	POPTR_0004s00940 (11)//POPTR_0004s00980 (11)//POPTR_0004s01010 (11)	scaffold_4:453946-454448(-) (11)//scaffold_4:474503-475005(-) (11)//scaffold_4:494375-494877(-) (11)	NA	O65451	Probable F-box protein At4g22030	AT4G22030.1	F-box family protein with a domain of unknown function (DUF295) 	LOC_Os02g13220.1	"F-box family protein, putative, expressed"	Medtr8g147080.1	F-box family protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217347.1.S1_at	A	A1TS	POPTR_0004s00920	POPTR_0004s00920 (11)	scaffold_4:440148-440556(+) (11)	NA	NA	NA	AT1G62280.1	SLAC1 homologue 1 	LOC_Os01g14520.1	"C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed"	Medtr8g147090.1	C4-dicarboxylate transporter/malic acid transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217348.1.S1_at	A	A1TS	POPTR_0004s00910	POPTR_0004s00910 (11)	scaffold_4:436139-436644(+) (11)	NA	Q54R82	Mitogen-activated protein kinase kinase kinase A	AT5G55090.1	mitogen-activated protein kinase kinase kinase 15 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g064870.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217349.1.S1_at	A	A1TS	POPTR_0004s00890	POPTR_0004s00890 (11)	scaffold_4:418510-418706(+) (11)	NA	Q9C519	WRKY transcription factor 6	AT1G62300.1	WRKY family transcription factor 	LOC_Os01g14440.1	"OsWRKY1v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr8g147130.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.217349.1.S1_x_at	A	A1TS	POPTR_0004s00890	POPTR_0004s00890 (11)	scaffold_4:418515-418884(+) (11)	NA	Q9C519	WRKY transcription factor 6	AT1G62300.1	WRKY family transcription factor 	LOC_Os01g14440.1	"OsWRKY1v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr8g147130.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.21735.3.A1_at	A	A1TA	POPTR_0004s10410	POPTR_0004s10410 (9)	scaffold_4:8952579-8952990(+) (10)	NA	Q6DD45	Zinc finger CCHC domain-containing protein 8	AT5G38600.1	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein 	LOC_Os06g30020.1	"PSP domain containing protein, expressed"	AC233657_33.1	"Zinc finger, CCHC-type; PSP, proline-rich AC233657.1 169292-178036 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.217351.1.S1_at	A	A1TS	POPTR_0004s00870	POPTR_0004s00870 (11)	scaffold_4:394441-395374(+) (11)	NA	O65456	Probable pectate lyase 16	AT4G22080.1	root hair specific 14 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g147150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217352.1.S1_at	A	A1TS	POPTR_0004s00860	POPTR_0004s00860 (11)	scaffold_4:392304-392592(+) (11)	NA	NA	NA	AT1G11925.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217353.1.S1_s_at	A	A1TS	POPTR_0004s00850	POPTR_0004s00850 (11)	scaffold_4:388719-388934(+) (11)	NA	NA	NA	AT1G11925.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217354.1.S1_at	A	A1TS	POPTR_0004s00840	POPTR_0004s00840 (11)	scaffold_4:385538-385673(+) (11)	NA	NA	NA	AT1G11925.1	Stigma-specific Stig1 family protein 	LOC_Os05g18860.1	"STIGL2 - Stigma-specific Stig1 family protein precursor, putative"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217355.1.S1_at	A	A1TS	POPTR_0004s00830	POPTR_0004s00830 (11)	scaffold_4:378705-379120(+) (11)	NA	NA	NA	AT1G11925.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217356.1.S1_at	A	A1TS	POPTR_0004s00820	POPTR_0004s00820 (11)	scaffold_4:375500-375854(+) (11)	NA	NA	NA	AT1G11925.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217357.1.S1_at	A	A1TS	POPTR_0004s00810	POPTR_0004s00810 (11)	scaffold_4:368382-369190(-) (11)	NA	NA	NA	AT5G35735.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr5g100950.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217358.1.S1_at	A	A1TS	POPTR_0004s00780	POPTR_0004s00780 (10)	scaffold_4:357642-358401(-) (10)	NA	Q9LSP0	Peroxidase 29	AT3G17070.1	Peroxidase family protein 	LOC_Os05g14260.1	"peroxidase precursor, putative"	Medtr8g147160.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.21736.1.S1_at	A	A1TS	POPTR_0002s16400	POPTR_0002s16400 (11)	scaffold_2:12265991-12266908(-) (11)	NA	Q40353	Mitogen-activated protein kinase homolog MMK2	AT4G01370.1	MAP kinase 4 	LOC_Os10g38950.1	"CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235567_72.1	"Serine/threonine protein kinase, active site AC235567.1 262008-267145 F EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.21736.2.S1_s_at	A	A1TS	POPTR_0014s08450	POPTR_0014s08450 (11)	scaffold_14:6283410-6284311(-) (11)	NA	Q39024	Mitogen-activated protein kinase 4	AT4G01370.1	MAP kinase 4 	LOC_Os10g38950.1	"CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g088400.1	Serine/threonine protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217360.1.S1_at	A	A1TS	POPTR_0004s00760	POPTR_0004s00760 (11)	scaffold_4:336404-337913(+) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT4G22120.6	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.217361.1.S1_at	A	A1MS	POPTR_0004s00740	POPTR_0004s00740 (9)	scaffold_4:316097-316745(+) (10)	NA	Q9XI96	Proline-rich receptor-like protein kinase PERK7	AT3G21630.1	chitin elicitor receptor kinase 1 	LOC_Os08g42580.1	"protein kinase domain containing protein, expressed"	Medtr3g110330.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217362.1.S1_at	A	A1TS	POPTR_0004s00730	POPTR_0004s00730 (11)	scaffold_4:311412-312149(+) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217363.1.S1_at	A	A1TS	POPTR_0004s00720	POPTR_0004s00720 (11)	scaffold_4:303832-306613(+) (11)	NA	P12617	"Malonyl-CoA decarboxylase, mitochondrial"	AT4G04320.1	malonyl-CoA decarboxylase family protein 	LOC_Os09g23070.1	"malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0050080|malonyl-CoA decarboxylase activity	NA
PtpAffx.217365.1.S1_at	A	A1TS	POPTR_0004s00690	POPTR_0004s00690 (11)	scaffold_4:278941-281786(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G62330.1	O-fucosyltransferase family protein 	LOC_Os06g35410.1	"growth regulator related protein, putative, expressed"	Medtr8g147250.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217366.1.S1_at	A	A1MS	POPTR_0004s00680	POPTR_0004s00680 (9)	scaffold_4:273659-274688(+) (9)	NA	NA	NA	AT1G62340.1	PA-domain containing subtilase family protein 	LOC_Os01g56320.1	"OsSub4 - Putative Subtilisin homologue, expressed"	Medtr8g147280.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217367.1.S1_at	A	A1TS	POPTR_0004s00630	POPTR_0004s00630 (11)	scaffold_4:244834-245767(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217368.1.S1_at	A	A1TS	POPTR_0004s00610	POPTR_0004s00610 (11)	scaffold_4:234464-235329(+) (11)	NA	O22299	Homeobox protein knotted-1-like LET6	AT1G62360.1	KNOX/ELK homeobox transcription factor 	NA	NA	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.217369.1.S1_at	A	A1TS	POPTR_0004s00570	POPTR_0004s00570 (11)	scaffold_4:218609-220210(+) (11)	NA	O28972	Cell division cycle protein 48 homolog AF_1297	AT4G04180.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g50680.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.217370.1.S1_at	A	A1TS	POPTR_0004s00540	POPTR_0004s00540 (11)	scaffold_4:194692-195095(-) (11)	NA	NA	NA	AT4G18830.1	ovate family protein 5 	LOC_Os04g37510.1	DUF623 domain containing protein	Medtr8g147400.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217371.1.S1_at	A	A1TS	POPTR_0004s00530	POPTR_0004s00530 (11)	scaffold_4:192856-193131(+) (11)	NA	NA	NA	AT3G54070.1	Ankyrin repeat family protein 	NA	NA	Medtr5g028530.1	"ankyrin repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217374.1.S1_at	A	A1TS	POPTR_0004s00520	POPTR_0004s00520 (11)	scaffold_4:181442-181877(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217375.1.S1_at	A	A1TS	POPTR_0004s00510	POPTR_0004s00510 (11)	scaffold_4:177036-177360(+) (11)	NA	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr2g025590.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217376.1.S1_at	A	A1MS	POPTR_0004s00470	POPTR_0004s00470 (9)	scaffold_4:166142-166431(-) (9)	NA	NA	NA	AT4G03965.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g147420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217377.1.S1_at	A	A1TS	POPTR_0004s00410	POPTR_0004s00410 (11)	scaffold_4:126604-127132(-) (11)	NA	Q8GYN5	RPM1-interacting protein 4	AT3G25070.1	RPM1 interacting protein 4 	LOC_Os03g63140.2	"nitrate-induced NOI protein, expressed"	Medtr2g029230.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217378.1.S1_at	A	A1TS	POPTR_0004s00400	POPTR_0004s00400 (9)	scaffold_4:124369-124933(-) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os12g21850.1	"OsMADS73 - MADS-box family gene with M-alpha type-box, expressed"	Medtr3g109260.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.217379.1.S1_at	A	A1TS	POPTR_0004s00370	POPTR_0004s00370 (11)	scaffold_4:117338-118482(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT4G22290.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217381.1.S1_at	A	A1TS	POPTR_0004s00350	POPTR_0004s00350 (11)	scaffold_4:99128-99525(+) (11)	NA	NA	NA	AT1G12020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os11g29810.1	conserved hypothetical protein	Medtr2g029450.1	"protein F12F1.11 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217382.1.S1_at	A	A1TS	POPTR_0004s00280	POPTR_0004s00280 (11)	scaffold_4:71076-71168(+) (11)	NA	O04928	Phosphatidate cytidylyltransferase	AT4G22340.3	cytidinediphosphate diacylglycerol synthase 2 	LOC_Os01g55360.3	"phosphatidate cytidylyltransferase, putative, expressed"	Medtr2g029610.1	Phosphatidate cytidylyltransferase 	NA	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	GO:0016020|membrane
PtpAffx.217382.1.S1_s_at	A	A1TS	POPTR_0004s00280	POPTR_0004s00280 (11)	scaffold_4:69934-71077(+) (11)	NA	O04928	Phosphatidate cytidylyltransferase	AT4G22340.3	cytidinediphosphate diacylglycerol synthase 2 	LOC_Os01g55360.3	"phosphatidate cytidylyltransferase, putative, expressed"	Medtr2g029610.1	Phosphatidate cytidylyltransferase 	NA	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	GO:0016020|membrane
PtpAffx.217383.1.S1_at	A	A1TS	POPTR_0004s00270	POPTR_0004s00270 (11)	scaffold_4:59127-59507(-) (11)	NA	Q6XAT2	LRR receptor-like serine/threonine-protein kinase ERL2	AT3G17640.1	Leucine-rich repeat (LRR) family protein 	LOC_Os06g28480.1	"polygalacturonase inhibitor 1 precursor, putative, expressed"	Medtr3g107120.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.217384.1.S1_at	A	A1TS	POPTR_0004s00260	POPTR_0004s00260 (11)	scaffold_4:44367-44968(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27570.1	"OsFBA3 - F-box and FBA domain containing protein, expressed"	Medtr5g021800.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217385.1.S1_at	A	A1TS	POPTR_0004s00250	POPTR_0004s00250 (10)	scaffold_4:40127-40382(+) (10)	NA	Q8VDR9	Dedicator of cytokinesis protein 6	AT4G16340.1	guanyl-nucleotide exchange factors;GTPase binding;GTP binding 	LOC_Os03g21080.1	"guanine nucleotide exchange factor, putative, expressed"	Medtr8g065690.1	Dedicator of cytokinesis 	NA	GO:0005085|guanyl-nucleotide exchange factor activity||GO:0051020|GTPase binding||GO:0005525|GTP binding	NA
PtpAffx.217387.1.S1_at	A	A1TS	POPTR_0004s00240	POPTR_0004s00240 (11)	scaffold_4:32740-33407(-) (11)	NA	Q9VR91	Probable E3 ubiquitin-protein ligase HERC2	AT5G60870.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os09g38755.1	"E3 ubiquitin-protein ligase HERC2, putative, expressed"	Medtr7g047420.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217390.1.S1_at	A	A1TS	POPTR_0004s20430	POPTR_0004s20430 (10)	scaffold_4:20003127-20003439(-) (10)	NA	Q39238	Serine/threonine-protein kinase TOUSLED	AT5G20930.1	Protein kinase superfamily protein 	LOC_Os03g53880.1	"serine/threonine-protein kinase TOUSLED, putative, expressed"	Medtr5g094260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217390.1.S1_x_at	A	A1TS	POPTR_0004s20430	POPTR_0004s20430 (10)	scaffold_4:20003127-20003844(-) (10)	NA	Q39238	Serine/threonine-protein kinase TOUSLED	AT5G20930.1	Protein kinase superfamily protein 	LOC_Os03g53880.1	"serine/threonine-protein kinase TOUSLED, putative, expressed"	Medtr5g094260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217391.1.S1_s_at	A	A1TS	POPTR_0004s20420	POPTR_0004s20420 (11)	scaffold_4:19998465-19998795(-) (11)	NA	NA	NA	AT1G06340.1	Plant Tudor-like protein 	NA	NA	Medtr5g096340.1	Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.217396.1.S1_at	A	A1TS	POPTR_0001s36150	POPTR_0001s36150 (10)	scaffold_1:34653557-34653955(+) (10)	NA	NA	NA	AT3G27310.1	plant UBX domain-containing protein 1 	LOC_Os04g40870.1	"alveolar soft part sarcoma chromosome region, candidate 1, putative, expressed"	Medtr6g024990.1	UBX 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217397.1.S1_at	A	A1TS	POPTR_0007s02980	POPTR_0007s02980 (11)	scaffold_7:1743977-1744610(+) (11)	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr5g032910.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.217398.1.S1_at	A	A1MS	POPTR_0014s00610	POPTR_0014s00610 (11)	scaffold_14:556957-557058(+) (11)	NA	NA	NA	AT1G16770.1	unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g04780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217398.1.S1_x_at	A	A1MS	POPTR_0014s00610	POPTR_0014s00610 (10)	scaffold_14:556961-557358(+) (11)	NA	NA	NA	AT1G16770.1	unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g04780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217400.1.S1_at	A	A1TS	POPTR_0010s05040	POPTR_0010s05040 (11)	scaffold_10:3264899-3265175(+) (11)//scaffold_10:6392421-6392697(+) (11)	NA	NA	NA	AT5G18860.1	inosine-uridine preferring nucleoside hydrolase family protein 	LOC_Os05g33630.2	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr2g025820.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217403.1.S1_at	A	A1TS	POPTR_0002s18220	POPTR_0002s18220 (10)	scaffold_2:14156067-14156277(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217409.1.S1_at	A	A1TS	POPTR_0001s13000	POPTR_0001s13000 (11)	scaffold_1:10094965-10095166(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217410.1.S1_x_at	A	A1MS	POPTR_0004s12780	POPTR_0004s12780 (11)	scaffold_4:12058785-12059007(+) (11)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217412.1.S1_at	A	A1TS	POPTR_0004s12820	POPTR_0004s12820 (11)	scaffold_4:12083103-12083571(+) (11)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217412.1.S1_x_at	A	A1TS	POPTR_0004s12820	POPTR_0004s12820 (11)	scaffold_4:12083103-12083571(+) (11)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217414.1.S1_at	A	A1MS	POPTR_0004s12840	POPTR_0004s12840 (9)	scaffold_4:12204936-12209138(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217415.1.S1_at	A	A1TS	POPTR_0004s12850	POPTR_0004s12850 (11)	scaffold_4:12210538-12210962(-) (11)	NA	Q9ZVH0	Protein FEZ	AT1G26870.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g33910.1	"no apical meristem protein, putative, expressed"	Medtr5g043830.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.217416.1.S1_s_at	A	A2TS	POPTR_0004s12850	POPTR_0017s11830 (9)//POPTR_0004s12850 (9)	scaffold_17:11727694-11727808(+) (9)//scaffold_4:12211567-12211681(-) (9)	NA	Q9ZVH0	Protein FEZ	AT1G26870.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g33910.1	"no apical meristem protein, putative, expressed"	Medtr5g043830.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.217419.1.S1_at	A	A1MS	POPTR_0052s00200	POPTR_0052s00200 (11)	scaffold_52:43936-44118(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g35210.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.217431.1.S1_at	A	A1TS	POPTR_0017s04680	POPTR_0017s04680 (11)	scaffold_17:3577567-3579769(+) (11)	NA	Q9LRR5	Putative disease resistance protein At3g14460	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os02g02660.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g103510.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.217431.1.S1_s_at	A	A2TS	POPTR_0017s04680	POPTR_0017s04680 (11)//POPTR_0017s04700 (11)	scaffold_17:3577625-3578122(+) (11)//scaffold_17:3605249-3605746(+) (11)	NA	Q9LRR5	Putative disease resistance protein At3g14460	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os02g02660.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g103510.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.217434.1.S1_s_at	A	A2TS	POPTR_0001s30240	POPTR_0857s00210 (11)//POPTR_0001s30240 (11)	scaffold_1:28755900-28756784(+) (11)//scaffold_857:5639-6524(-) (11)	NA	Q9SQK3	"Ankyrin repeat domain-containing protein EMB506, chloroplastic"	AT5G40160.1	Ankyrin repeat family protein 	LOC_Os06g13000.1	"ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed"	Medtr2g055950.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217435.1.S1_s_at	A	A1TS	POPTR_0008s15390	POPTR_0008s15390 (11)	scaffold_665:6721-6906(+) (11)//scaffold_8:10250770-10250955(-) (11)	NA	NA	NA	AT3G22530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g07670.1	expressed protein	Medtr5g006510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217436.1.S1_s_at	A	A1TS	POPTR_0006s16340	POPTR_0006s16340 (11)	scaffold_6:14265481-14266177(-) (11)	NA	Q95QD7	Protein lin-54	AT4G29000.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os01g55580.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	AC225507_24.1	"Tesmin/TSO1-like, CXC AC225507.11 107125-103243 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217443.1.S1_at	A	A1TS	POPTR_0001s43770	POPTR_0001s43770 (11)	scaffold_1:44096538-44096952(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217445.1.S1_at	A	A1TS	POPTR_0013s03780	POPTR_0013s03780 (9)	scaffold_13:2438187-2438244(+) (9)//scaffold_13:4379460-4379517(+) (9)	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.217445.1.S1_s_at	A	A2TS	POPTR_0013s03780	POPTR_0013s03780 (11)//POPTR_0013s05980 (11)	scaffold_13:2438250-2438381(+) (11)//scaffold_13:4379523-4379654(+) (11)	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.217445.1.S1_x_at	A	A1TS	POPTR_0013s03780	POPTR_0013s03780 (9)	scaffold_13:2438187-2438477(+) (9)//scaffold_13:4379460-4379750(+) (9)	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.217446.1.S1_at	A	A2TA	POPTR_0011s10640	POPTR_0019s09680 (10)//POPTR_0011s10640 (10)	scaffold_11:13166854-13169933(+) (9)//scaffold_11:13182942-13183565(+) (10)//scaffold_19:11296926-11297549(+) (10)	POPTR_0011s10610 (6)	Q9C9H7	Receptor-like protein 12	AT1G71400.1	receptor like protein 12 	LOC_Os12g12010.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g072640.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.217449.1.S1_s_at	A	A3TS	POPTR_0011s10610	POPTR_0011s10610 (11)//POPTR_0011s10640 (11)//POPTR_0011s10651 (9)	scaffold_11:13135153-13135556(-) (11)//scaffold_11:13184321-13184721(-) (11)//scaffold_11:13197923-13198323(-) (11)//scaffold_81:10276-10679(-) (11)//scaffold_81:88300-88700(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr4g033130.1	"Cf-2.3, related "	NA	GO:0005515|protein binding	NA
PtpAffx.217450.1.S1_at	A	A1TS	POPTR_0081s00200	POPTR_0081s00200 (10)	scaffold_81:935-1643(-) (10)	NA	Q9NPC3	E3 ubiquitin-protein ligase CCNB1IP1	AT1G53490.1	RING/U-box superfamily protein 	LOC_Os02g13810.1	"DNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217451.1.S1_at	A	A1TS	POPTR_0011s10590	POPTR_0011s10590 (11)	scaffold_11:13124793-13125722(+) (11)	NA	Q500Y9	NADH kinase	AT1G78590.1	NAD(H) kinase 3 	LOC_Os09g17680.1	"NAD kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217452.1.S1_s_at	A	A1TS	POPTR_0011s10510	POPTR_0011s10510 (9)	scaffold_11:13002910-13003470(+) (11)	NA	Q9LJF8	F-box/LRR-repeat protein At3g26922	AT3G26922.1	F-box/RNI-like superfamily protein 	LOC_Os06g36220.1	"OsFBX198 - F-box domain containing protein, expressed"	Medtr8g018890.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217454.1.S1_at	A	A1TS	POPTR_0011s10460	POPTR_0011s10460 (11)	scaffold_11:12905167-12905931(+) (11)	NA	NA	NA	AT3G14760.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	AC147714_2.1	hypothetical protein AC147714.8 42643-40456 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217456.1.S1_s_at	A	A3TS	POPTR_0011s10430	POPTR_0011s10430 (11)//POPTR_0141s00210 (11)//POPTR_0011s10420 (10)	scaffold_11:12867842-12868513(+) (10)//scaffold_11:12881461-12882132(+) (11)//scaffold_141:46573-47244(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05870.1	"receptor kinase, putative, expressed"	Medtr5g019030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217457.1.S1_s_at	A	A2TS	POPTR_0011s10430	POPTR_0011s10430 (11)//POPTR_0141s00210 (11)	scaffold_11:12879251-12879404(+) (11)//scaffold_141:44363-44516(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05870.1	"receptor kinase, putative, expressed"	Medtr5g019030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217460.1.S1_at	A	A1TS	POPTR_0011s10400	POPTR_0011s10400 (11)	scaffold_11:12840473-12840626(-) (11)	NA	NA	NA	AT1G17030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19030.1	expressed protein	Medtr1g105900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217460.1.S1_x_at	A	A1TS	POPTR_0011s10400	POPTR_0011s10400 (11)	scaffold_11:12840473-12840626(-) (11)	NA	NA	NA	AT1G17030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19030.1	expressed protein	Medtr1g105900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217463.1.S1_at	A	A1TS	POPTR_0011s10360	POPTR_0011s10360 (11)	scaffold_11:12781990-12783803(-) (11)	NA	NA	NA	AT1G78540.1	SH2 domain protein B 	LOC_Os10g41770.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217465.1.S1_s_at	A	A1TS	POPTR_0011s10330	POPTR_0011s10330 (11)	scaffold_11:12770342-12770432(+) (11)	NA	Q3Y4F4	Chalcone--flavonone isomerase	AT1G53520.1	Chalcone-flavanone isomerase family protein 	LOC_Os02g21520.1	"chalcone isomerase 3, putative, expressed"	Medtr1g146220.1	Chalcone-flavanone isomerase 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
PtpAffx.217466.1.S1_at	A	A1TS	POPTR_0011s10310	POPTR_0011s10310 (10)	scaffold_11:12744995-12745733(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217467.1.S1_at	A	A2TS	POPTR_0011s10250	POPTR_0011s10250 (11)//POPTR_0019s09690 (10)	scaffold_11:12706035-12706213(-) (11)//scaffold_19:11303734-11303838(-) (10)	NA	NA	NA	AT1G22882.1	Galactose-binding protein 	LOC_Os01g65520.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr4g032100.2	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217471.1.S1_at	A	A2MS	POPTR_0011s10200	POPTR_0011s10200 (11)//POPTR_0011s10130 (9)	scaffold_11:12642728-12643025(-) (9)//scaffold_11:12664424-12664721(-) (11)//scaffold_11:12681300-12681597(-) (11)//scaffold_836:430-499(+) (9)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT1G78520.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os01g14140.1	"X8 domain containing protein, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217472.1.S1_at	A	A1TS	POPTR_0011s10190	POPTR_0011s10190 (9)	scaffold_11:12679103-12679862(-) (11)	NA	P72580	Prenyl transferase	AT1G78510.2	solanesyl diphosphate synthase 1 	LOC_Os05g50550.1	"polyprenyl synthetase, putative, expressed"	NA	NA	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.217473.1.S1_s_at	A	A7TS	POPTR_0005s13320	POPTR_0005s13330 (11)//POPTR_0005s18760 (11)//POPTR_0005s18380 (11)//POPTR_0005s13320 (11)//POPTR_0005s13340 (11)//POPTR_0005s18710 (11)//POPTR_0005s18750 (11)	scaffold_5:10480033-10480085(-) (11)//scaffold_5:10492620-10492672(-) (11)//scaffold_5:10498603-10498655(-) (11)//scaffold_5:16536391-16536443(+) (11)//scaffold_5:16946793-16946845(-) (11)//scaffold_5:17041905-17041957(+) (11)//scaffold_5:17047641-17047693(+) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217476.1.S1_s_at	A	A6TS	POPTR_0007s05920	POPTR_0007s05940 (11)//POPTR_0177s00220 (11)//POPTR_0177s00210 (11)//POPTR_0007s05960 (11)//POPTR_0007s05920 (11)//POPTR_0007s05945 (11)	scaffold_177:47855-48042(+) (11)//scaffold_177:83060-83247(+) (11)//scaffold_7:4080252-4080439(+) (11)//scaffold_7:4099983-4100170(+) (11)//scaffold_7:4109980-4110167(+) (11)//scaffold_7:4114804-4114991(+) (11)	NA	Q42602	Cytochrome P450 89A2	AT1G64940.1	"cytochrome P450, family 87, subfamily A, polypeptide 6 "	LOC_Os10g36980.1	"transposon protein, putative, unclassified, expressed"	Medtr2g010350.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.217495.1.S1_s_at	A	A1TS	POPTR_0005s01580	POPTR_0005s01580 (11)	scaffold_5:1035160-1035863(+) (11)	NA	Q3E9D3	Probable pectinesterase 55	AT5G18990.1	Pectin lyase-like superfamily protein 	LOC_Os01g19440.1	"pectinesterase, putative"	AC146557_2.1	Pectinesterase AC146557.33 4034-7009 H EGN_Mt090430 200	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.217501.1.S1_at	A	A1MS	POPTR_0013s11120	POPTR_0013s11120 (11)	scaffold_13:11814374-11814778(-) (11)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65110.1	"POT family protein, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.217501.1.S1_s_at	A	A1TS	POPTR_0013s11120	POPTR_0013s11120 (11)	scaffold_13:11814396-11814802(-) (11)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65110.1	"POT family protein, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.217506.1.S1_at	A	A1MA	POPTR_0008s21690	POPTR_0008s21690 (11)	scaffold_8:15856665-15856985(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g009150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217506.1.S1_s_at	A	A1MA	POPTR_0008s21690	POPTR_0008s21690 (11)	scaffold_8:15856558-15856796(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g009150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217507.1.S1_at	A	A1TA	POPTR_0008s21690	POPTR_0008s21690 (9)	scaffold_8:15857545-15857650(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g009150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217511.1.S1_at	A	A1TS	POPTR_0008s21780	POPTR_0008s21780 (9)	scaffold_8:15968621-15969662(-) (9)	NA	NA	NA	AT4G02940.1	"oxidoreductase, 2OG-Fe(II) oxygenase family protein "	LOC_Os05g33310.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217512.1.S1_at	A	A1TS	POPTR_0008s21815	POPTR_0008s21815 (11)	scaffold_8:16077427-16078124(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217512.1.S1_x_at	A	A1TS	POPTR_0008s21815	POPTR_0008s21815 (11)	scaffold_8:16077248-16078124(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217520.1.S1_at	A	A1TS	POPTR_0017s13820	POPTR_0017s13820 (11)	scaffold_17:14042660-14043447(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g126590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217521.1.S1_at	A	A1TS	POPTR_0016s07170	POPTR_0016s07170 (11)	scaffold_16:4998360-4998451(+) (11)	NA	O54922	Exocyst complex component 7	AT5G52340.1	exocyst subunit exo70 family protein A2 	LOC_Os11g05880.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr1g112310.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.217521.1.S1_x_at	A	A1TS	POPTR_0016s07170	POPTR_0016s07170 (11)	scaffold_16:4998360-4998598(+) (11)	NA	O54922	Exocyst complex component 7	AT5G52340.1	exocyst subunit exo70 family protein A2 	LOC_Os11g05880.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr1g112310.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.217522.1.S1_at	A	A1TS	POPTR_0018s14750	POPTR_0018s14750 (10)	scaffold_18:14833538-14833890(+) (10)	NA	NA	NA	AT5G58100.1	unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g26984.1	expressed protein	Medtr5g019420.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217525.1.S1_s_at	A	A1TS	POPTR_0016s02130	POPTR_0016s02130 (10)	scaffold_16:1030866-1031462(+) (10)//scaffold_98:11614-12214(+) (11)	POPTR_0098s00230 (8)	NA	NA	AT3G22270.1	Topoisomerase II-associated protein PAT1 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217526.1.S1_x_at	A	A2TS	POPTR_0019s11750	POPTR_0036s00205 (11)//POPTR_0019s11750 (11)	scaffold_19:12978544-12978917(-) (11)//scaffold_36:85622-85995(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217529.1.S1_s_at	A	A3TS	POPTR_0004s09390	POPTR_0004s09390 (11)//POPTR_0229s00260 (11)//POPTR_0229s00240 (10)	scaffold_229:17922-18266(+) (10)//scaffold_229:28612-28956(+) (11)//scaffold_4:7921712-7922056(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G71140.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.217530.1.S1_at	A	A1TS	POPTR_0017s00490	POPTR_0017s00490 (11)	scaffold_17:181455-182400(-) (11)	NA	Q05047	Secologanin synthase	AT1G17060.1	cytochrome p450 72c1 	LOC_Os01g43760.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217532.1.S1_at	A	A1MS	POPTR_0017s00440	POPTR_0017s00440 (11)	scaffold_17:149243-149773(+) (11)	NA	A8MQA3	Pentatricopeptide repeat-containing protein At4g21065	AT4G21065.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g05560.1	conserved hypothetical protein	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217533.1.S1_at	A	A1TS	POPTR_0017s00430	POPTR_0017s00430 (11)	scaffold_17:141674-142747(+) (11)	NA	Q54T05	Serine/threonine-protein kinase rio2	AT3G51270.1	protein serine/threonine kinases;ATP binding;catalytics 	LOC_Os01g66520.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr4g165610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217535.1.S1_at	A	A1TS	POPTR_0017s00390	POPTR_0017s00390 (11)	scaffold_17:119842-120205(+) (11)	NA	NA	NA	AT2G44060.2	"Late embryogenesis abundant protein, group 2 "	LOC_Os07g17120.1	"late embryogenesis abundant protein, putative, expressed"	Medtr5g095950.2	"late embryogenesis-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217536.1.S1_at	A	A1TS	POPTR_0017s00370	POPTR_0017s00370 (11)	scaffold_17:114734-115938(+) (11)	NA	P55228	"Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic"	AT1G05610.1	ADP-glucose pyrophosphorylase small subunit 2 	LOC_Os09g12660.2	"glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed"	Medtr5g104670.1	Nucleotidyl transferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.217537.1.S1_at	A	A1TS	POPTR_0017s00340	POPTR_0017s00340 (10)	scaffold_17:94368-96417(-) (10)	NA	Q9SKB3	Poly(ADP-ribose) glycohydrolase 1	AT2G31870.2	Poly (ADP-ribose) glycohydrolase (PARG) 	LOC_Os03g62680.1	hypothetical protein	Medtr3g028610.1	Poly glycohydrolase 	GO:0005975|carbohydrate metabolic process	GO:0004649|poly(ADP-ribose) glycohydrolase activity	NA
PtpAffx.217538.1.S1_at	A	A1TS	POPTR_0017s00320	POPTR_0017s00320 (11)	scaffold_17:87614-88119(+) (11)	NA	NA	NA	AT2G43990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 1419 Blast hits to 494 proteins in 144 species: Archae - 0; Bacteria - 300; Metazoa - 246; Fungi - 102; Plants - 31; Viruses - 2; Other Eukaryotes - 738 (source: NCBI BLink). 	LOC_Os11g14240.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217539.1.S1_at	A	A1TS	POPTR_0017s00290	POPTR_0017s00290 (11)	scaffold_17:70352-70632(-) (11)	NA	A4GYP8	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	NA	NA	Medtr7g143380.1	"DNA-directed RNA polymerase subunit beta'', putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217540.1.S1_s_at	A	A1TS	POPTR_0017s00280	POPTR_0017s00280 (10)	scaffold_17:69021-69328(+) (10)	POPTR_0017s00680 (8)	Q39172	Probable NADP-dependent oxidoreductase P1	AT5G16970.1	alkenal reductase 	LOC_Os12g12580.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.217542.1.S1_s_at	A	A4TS	POPTR_0017s00270	POPTR_0017s00301 (11)//POPTR_0017s00270 (11)//POPTR_0017s00660 (11)//POPTR_0017s00650 (9)	scaffold_17:58441-58645(-) (11)//scaffold_17:75808-76012(-) (11)//scaffold_17:378062-381826(+) (11)//scaffold_17:381836-382001(+) (9)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217543.1.S1_s_at	A	A3TS	POPTR_0017s03630	POPTR_0017s03630 (11)//POPTR_0017s00700 (10)//POPTR_0017s00230 (10)	scaffold_17:36886-36928(-) (10)//scaffold_17:414752-414794(+) (10)//scaffold_17:2692389-2692433(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.217544.1.S1_at	A	A1TS	POPTR_0017s03640	POPTR_0017s03640 (11)	scaffold_17:2702004-2702319(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217546.1.S1_s_at	A	A5TS	POPTR_0017s00200	POPTR_1276s00200 (11)//POPTR_0017s00200 (11)//POPTR_0017s03710 (11)//POPTR_1157s00200 (11)//POPTR_0017s00230 (10)	scaffold_1157:2863-3303(+) (11)//scaffold_1276:608-1048(-) (11)//scaffold_17:4205-4645(-) (11)//scaffold_17:35737-36184(-) (11)//scaffold_17:2747839-2748279(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217548.1.S1_s_at	A	A4TS	POPTR_0017s00720	POPTR_0017s03820 (11)//POPTR_0017s00720 (11)//POPTR_0017s03660 (11)//POPTR_0017s00750 (9)	scaffold_17:427816-428335(+) (11)//scaffold_17:473522-476087(+) (11)//scaffold_17:2716643-2717162(+) (11)//scaffold_17:2823354-2823873(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr4g122180.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217552.1.S1_at	A	A1TS	POPTR_0017s03700	POPTR_0017s03700 (11)	scaffold_17:2744359-2744592(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr4g122150.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217552.1.S1_x_at	A	A1TS	POPTR_0017s03700	POPTR_0017s03700 (11)	scaffold_17:2744352-2744592(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr4g122150.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217554.1.S1_at	A	A1TS	POPTR_0017s00710	POPTR_0017s00710 (11)	scaffold_17:423853-424014(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217558.1.S1_at	A	A1TS	POPTR_0017s00730	POPTR_0017s00730 (11)	scaffold_17:457924-461776(+) (11)	POPTR_0017s03800 (6)	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217558.1.S1_s_at	A	A2TS	POPTR_0017s00240	POPTR_0017s00240 (11)//POPTR_0017s03800 (10)	scaffold_17:39957-40381(-) (11)//scaffold_17:2807548-2807641(+) (10)	POPTR_0017s00730 (7)	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217559.1.S1_at	A	A1TS	POPTR_0017s03810	POPTR_0017s03810 (11)	scaffold_17:2814405-2814596(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217559.1.S1_x_at	A	A1TS	POPTR_0017s03810	POPTR_0017s03810 (11)	scaffold_17:2814163-2814596(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217562.1.S1_s_at	A	A1TS	POPTR_0017s03900	POPTR_0017s03900 (11)	scaffold_17:2902013-2902460(+) (11)	NA	Q5RC80	RNA-binding protein 39	AT5G09880.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217567.1.S1_at	A	A1TS	POPTR_0003s19100	POPTR_0003s19100 (11)	scaffold_3:17919168-17919342(+) (11)	NA	NA	NA	AT1G76750.1	Protein of unknown function (DUF1278) 	LOC_Os11g06730.1	"ECAGL2 - ECA1 gametogenesis related family protein precursor, expressed"	Medtr3g064370.1	Protein of unknown function DUF1278 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217567.1.S1_x_at	A	A1TS	POPTR_0003s19100	POPTR_0003s19100 (11)	scaffold_3:17919137-17919342(+) (11)	NA	NA	NA	AT1G76750.1	Protein of unknown function (DUF1278) 	LOC_Os11g06730.1	"ECAGL2 - ECA1 gametogenesis related family protein precursor, expressed"	Medtr3g064370.1	Protein of unknown function DUF1278 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217568.1.S1_at	A	A1TS	POPTR_0003s19090	POPTR_0003s19090 (11)	scaffold_3:17916846-17917429(-) (11)	NA	O23659	B3 domain-containing protein At2g33720	AT2G33720.1	AP2/B3-like transcriptional factor family protein 	NA	NA	Medtr2g073930.1	transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.217570.1.S1_at	A	A1MS	POPTR_0002s01420	POPTR_0002s01420 (11)	scaffold_14:5715849-5716016(+) (11)//scaffold_2:746375-746542(+) (11)	NA	Q84P21	4-coumarate--CoA ligase-like 5	AT1G20510.1	OPC-8:0 CoA ligase1 	LOC_Os03g04000.1	"AMP-binding domain containing protein, expressed"	Medtr8g043300.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.217571.1.S1_at	A	A1TS	POPTR_0014s07620	POPTR_0014s07620 (11)	scaffold_14:5716900-5717731(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217577.1.S1_at	A	A3TS	POPTR_0006s18880	POPTR_0006s18880 (9)//POPTR_0089s00200 (9)//POPTR_0637s00200 (9)	scaffold_6:17537087-17537796(+) (10)//scaffold_6:17625138-17625847(+) (11)//scaffold_637:10653-11362(+) (11)//scaffold_89:24475-25195(+) (11)	POPTR_0006s18830 (8)//POPTR_0496s00200 (6)	Q9SHV1	Glutamate receptor 2.2	AT2G24720.1	glutamate receptor 2.2 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.217578.1.S1_at	A	A1TS	POPTR_0006s18780	POPTR_0006s18780 (11)	scaffold_6:17412852-17413738(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT1G52540.1	Protein kinase superfamily protein 	LOC_Os06g44430.1	"protein kinase, putative"	Medtr2g126640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217579.1.S1_at	A	A1MS	POPTR_0006s18770	POPTR_0006s18770 (11)	scaffold_6:17402396-17403255(-) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G57670.2	Protein kinase superfamily protein 	LOC_Os08g15060.1	"ATP binding protein, putative, expressed"	Medtr8g128150.1	Tyrosine protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217581.1.S1_at	A	A1TS	POPTR_0006s18710	POPTR_0006s18710 (9)	scaffold_6:17266292-17267408(-) (9)	NA	Q94CG0	CBL-interacting serine/threonine-protein kinase 21	AT5G57630.1	CBL-interacting protein kinase 21 	LOC_Os03g03510.1	"CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g128300.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217581.1.S1_s_at	A	A1TS	POPTR_0006s18710	POPTR_0006s18710 (11)	scaffold_6:17266449-17267164(-) (11)	NA	Q94CG0	CBL-interacting serine/threonine-protein kinase 21	AT5G57630.1	CBL-interacting protein kinase 21 	LOC_Os03g03510.1	"CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g128300.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217582.1.S1_at	A	A1TS	POPTR_0006s18700	POPTR_0006s18700 (11)	scaffold_6:17260716-17261092(+) (11)	NA	Q40374	Pathogenesis-related protein PR-1	AT4G30320.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os02g54540.1	SCP-like extracellular protein	Medtr8g128380.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217584.1.S1_at	A	A1TS	POPTR_0006s18630	POPTR_0006s18630 (11)	scaffold_6:17199405-17199886(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G52450.1	MATE efflux family protein 	LOC_Os06g29844.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.217585.1.S1_at	A	A1TS	POPTR_0006s18620	POPTR_0006s18620 (11)	scaffold_6:17190130-17190422(+) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G57620.1	myb domain protein 36 	LOC_Os08g15020.1	"MYB family transcription factor, putative, expressed"	Medtr8g128450.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217585.1.S1_x_at	A	A1TS	POPTR_0006s18620	POPTR_0006s18620 (11)	scaffold_6:17190130-17190679(+) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G57620.1	myb domain protein 36 	LOC_Os08g15020.1	"MYB family transcription factor, putative, expressed"	Medtr8g128450.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217588.1.S1_at	A	A1TS	POPTR_0006s18590	POPTR_0006s18590 (9)	scaffold_6:17132825-17134576(-) (11)	NA	P22805	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	AT5G57590.1	adenosylmethionine-8-amino-7-oxononanoate transaminases 	LOC_Os08g14770.1	"aminotransferase, putative, expressed"	Medtr8g128540.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.217589.1.S1_at	A	A1TS	POPTR_0006s18590	POPTR_0006s18590 (11)	scaffold_6:17123330-17125956(-) (11)	NA	P22805	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	AT5G57590.1	adenosylmethionine-8-amino-7-oxononanoate transaminases 	LOC_Os08g14770.1	"aminotransferase, putative, expressed"	Medtr8g128540.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.217591.1.S1_at	A	A1TS	POPTR_0006s18570	POPTR_0006s18570 (11)	scaffold_6:17104780-17105219(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217592.1.S1_at	A	A2TS	POPTR_0006s18550	POPTR_0006s18550 (11)//POPTR_0006s18560 (11)	scaffold_6:17076836-17077519(-) (11)//scaffold_6:17094922-17095605(-) (11)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.217594.1.S1_at	A	A1MS	POPTR_0157s00230	POPTR_0157s00230 (9)	scaffold_157:18571-19389(-) (9)	NA	NA	NA	AT5G10730.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g35039.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138720.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217596.1.S1_x_at	A	A1TS	POPTR_1269s00200	POPTR_1269s00200 (11)	scaffold_1269:3976-4457(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217608.1.S1_s_at	A	A1TS	POPTR_0019s11410	POPTR_0019s11410 (11)	scaffold_19:12703906-12704079(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217609.1.S1_s_at	A	A1TS	POPTR_0019s11400	POPTR_0019s11400 (11)	scaffold_19:12702816-12702978(+) (11)	NA	Q43046	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os04g09654.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.217610.1.S1_s_at	A	A1TS	POPTR_0012s11390	POPTR_0012s11390 (11)	scaffold_12:11851240-11851455(-) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr2g009030.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.217617.1.S1_x_at	A	A1TS	POPTR_0024s00735	POPTR_0024s00735 (11)	scaffold_24:586683-586867(+) (11)	POPTR_0032s00210 (8)//POPTR_0009s00550 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217618.1.S1_s_at	A	A2TS	POPTR_0024s00730	POPTR_0024s00730 (11)//POPTR_0028s00200 (11)	scaffold_24:557906-558338(+) (11)//scaffold_28:61935-62367(+) (11)	NA	Q9LHF1	Leucine-rich repeat extensin-like protein 4	AT3G24480.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g41120.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr6g102080.1	Leucine-rich repeat 	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall||GO:0005515|protein binding	NA
PtpAffx.217619.1.S1_at	A	A1MS	POPTR_0002s03520	POPTR_0002s03520 (10)	scaffold_2:2184566-2184906(-) (10)	NA	NA	NA	AT1G75310.1	auxin-like 1 protein 	LOC_Os01g44310.2	"dnaJ domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21762.1.S1_at	A	A1TS	POPTR_0014s04370	POPTR_0014s04370 (10)	scaffold_14:3416926-3417601(+) (10)	NA	NA	NA	AT2G44640.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3769 (InterPro:IPR022244); BEST Arabidopsis thaliana protein match is: pigment defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	LOC_Os01g14820.1	expressed protein	Medtr8g009100.1	"PDE320, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217620.1.S1_at	A	A1TS	POPTR_0019s01060	POPTR_0019s01060 (11)	scaffold_19:811580-812022(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217620.1.S1_x_at	A	A1TS	POPTR_0019s01060	POPTR_0019s01060 (11)	scaffold_19:799016-812018(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217621.1.S1_at	A	A1TS	POPTR_0017s10070	POPTR_0017s10070 (11)	scaffold_17:9060133-9060647(-) (11)	NA	NA	NA	AT4G14605.1	Mitochondrial transcription termination factor family protein 	LOC_Os02g39040.1	"mTERF domain containing protein, expressed"	Medtr2g038720.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217622.1.S1_s_at	A	A1TS	POPTR_0011s03340	POPTR_0011s03340 (11)	scaffold_11:3483676-3483994(-) (11)	NA	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os03g16950.1	"cysteine-rich repeat secretory protein 55 precursor, putative, expressed"	Medtr2g010780.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217626.1.S1_at	A	A1TS	POPTR_0010s08050	POPTR_0010s08050 (9)	scaffold_10:9005080-9005112(-) (9)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os10g04720.1	"TKL_IRAK_DUF26-la.5 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235005_21.1	Tyrosine protein kinase AC235005.1 68612-71230 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217626.1.S1_s_at	A	A1TS	POPTR_0010s08050	POPTR_0010s08050 (11)	scaffold_10:9005103-9006433(-) (11)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os10g04720.1	"TKL_IRAK_DUF26-la.5 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235005_21.1	Tyrosine protein kinase AC235005.1 68612-71230 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217629.1.S1_at	A	A1MS	POPTR_0019s13690	POPTR_0019s13690 (11)	scaffold_19:14557038-14557843(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03500.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr4g079350.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217629.1.S1_x_at	A	A1MS	POPTR_0019s13690	POPTR_0019s13690 (11)	scaffold_19:14556968-14558108(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03500.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr4g079350.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217630.1.S1_at	A	A1TS	POPTR_0001s22970	POPTR_0001s22970 (11)	scaffold_1:22018717-22019082(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217630.1.S1_x_at	A	A1TS	POPTR_0001s22970	POPTR_0001s22970 (11)	scaffold_1:22018717-22019345(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217633.1.S1_s_at	A	A1TS	POPTR_0017s10180	POPTR_0017s10180 (11)	scaffold_17:9435467-9435846(-) (11)	NA	Q91WC0	SET domain-containing protein 3	AT5G14260.2	Rubisco methyltransferase family protein 	LOC_Os12g13460.1	"SET domain-containing protein, putative, expressed"	Medtr6g025190.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217634.1.S1_at	A	A1TS	POPTR_0017s10170	POPTR_0017s10170 (11)	scaffold_17:9429789-9431488(+) (11)	NA	Q9LK31	Kelch repeat-containing protein At3g27220	AT1G51540.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os08g03420.1	"kelch repeat protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217635.1.S1_at	A	A1TS	POPTR_0017s10150	POPTR_0017s10150 (11)	scaffold_17:9379684-9379901(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217637.1.S1_at	A	A1MS	POPTR_0017s10120	POPTR_0017s10120 (9)	scaffold_17:9344005-9345745(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217639.1.S1_at	A	A1TS	POPTR_0017s10090	POPTR_0017s10090 (11)	scaffold_17:9186059-9187262(+) (11)	NA	Q9FQ20	Sister chromatid cohesion 1 protein 2	AT5G40840.1	Rad21/Rec8-like family protein 	LOC_Os01g67250.2	"Rad21 / Rec8 like protein, putative, expressed"	Medtr8g142230.1	"Rad21/Rec8 like protein, C-terminal; Rad21/Rec8 like protein, N-terminal "	NA	NA	GO:0000228|nuclear chromosome
PtpAffx.217639.1.S1_s_at	A	A1TS	POPTR_0017s10090	POPTR_0017s10090 (11)	scaffold_17:9187300-9187681(+) (11)	NA	Q9FQ20	Sister chromatid cohesion 1 protein 2	AT5G40840.1	Rad21/Rec8-like family protein 	LOC_Os01g67250.2	"Rad21 / Rec8 like protein, putative, expressed"	Medtr8g142230.1	"Rad21/Rec8 like protein, C-terminal; Rad21/Rec8 like protein, N-terminal "	NA	NA	GO:0000228|nuclear chromosome
PtpAffx.217640.1.S1_at	A	A1TS	POPTR_0017s10080	POPTR_0017s10080 (11)	scaffold_17:9138537-9140894(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217641.1.S1_at	A	A1TS	POPTR_0017s10060	POPTR_0017s10060 (11)	scaffold_17:9038898-9039251(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217643.1.S1_s_at	A	A2TS	POPTR_0019s03090	POPTR_0019s03090 (11)//POPTR_0078s00250 (11)	scaffold_19:3105474-3105516(+) (11)//scaffold_19:3111338-3111380(+) (11)//scaffold_78:68370-68412(-) (11)//scaffold_78:68606-68648(-) (11)//scaffold_78:68842-68884(-) (11)//scaffold_78:74005-74047(-) (11)//scaffold_78:74241-74283(-) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.217648.1.S1_at	A	A1TA	POPTR_0016s01300	POPTR_0016s01300 (10)	scaffold_14:456916-456999(-) (10)//scaffold_14:465517-465600(-) (10)//scaffold_16:573122-573205(+) (10)//scaffold_193:19234-19317(-) (10)//scaffold_193:25742-25825(-) (10)//scaffold_3:4197247-4197330(+) (10)//scaffold_5:497265-497348(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217650.1.S1_at	A	A1TS	POPTR_0002s26640	POPTR_0002s26640 (11)	scaffold_2:23529348-23529383(+) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.217658.1.S1_at	A	A1TS	POPTR_0012s02060	POPTR_0012s02060 (11)	scaffold_12:1643781-1649237(-) (10)//scaffold_12:1677752-1678210(-) (11)	POPTR_0012s02050 (8)	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.217658.1.S1_x_at	A	A2TS	POPTR_0012s02060	POPTR_0012s02060 (11)//POPTR_0012s02050 (9)	scaffold_12:1643781-1649237(-) (10)//scaffold_12:1677752-1678210(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.217662.1.S1_at	A	A1TS	POPTR_0010s21920	POPTR_0010s21920 (11)	scaffold_10:19027203-19027678(+) (11)	NA	Q9UPT5	Exocyst complex component 7	AT2G39380.1	exocyst subunit exo70 family protein H2 	LOC_Os01g69230.1	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr2g114210.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.217662.1.S1_s_at	A	A1TS	POPTR_0010s21920	POPTR_0010s21920 (11)	scaffold_10:19027336-19027575(+) (11)	NA	Q9UPT5	Exocyst complex component 7	AT2G39380.1	exocyst subunit exo70 family protein H2 	LOC_Os01g69230.1	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr2g114210.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.217668.1.S1_s_at	A	A1TS	POPTR_0005s05010	POPTR_0005s05010 (11)	scaffold_5:3342065-3342641(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21767.1.S1_at	A	A1TS	POPTR_0011s17120	POPTR_0011s17120 (11)	scaffold_11:18729626-18729821(+) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os04g57220.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.21767.1.S1_s_at	A	A1TS	POPTR_0011s17120	POPTR_0011s17120 (11)	scaffold_11:18728619-18728664(+) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os04g57220.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.21767.3.A1_at	A	A1TS	POPTR_0006s00980	POPTR_0006s00980 (11)	scaffold_6:550173-550938(-) (11)	NA	NA	NA	AT4G15140.1	unknown protein; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g107150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217672.1.S1_at	A	A1TS	POPTR_0011s12130	POPTR_0011s12130 (11)	scaffold_11:14910903-14911052(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217674.1.S1_at	A	A1TS	POPTR_0012s06820	POPTR_0012s06820 (11)	scaffold_12:7276507-7276993(+) (11)	NA	NA	NA	AT5G07980.1	dentin sialophosphoprotein-related 	LOC_Os03g11460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217678.1.S1_s_at	A	A1MS	POPTR_0007s06280	POPTR_0007s06280 (9)	scaffold_7:4436415-4437835(-) (11)//scaffold_7:4437822-4437909(-) (9)	POPTR_0007s06320 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217685.1.S1_at	A	A1TA	POPTR_0015s15220	POPTR_0015s15220 (9)	scaffold_15:14494404-14494567(-) (9)//scaffold_15:14560824-14560987(-) (11)	POPTR_0015s15120 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217693.1.S1_s_at	A	A1TS	POPTR_0004s13360	POPTR_0004s13360 (11)	scaffold_4:13066419-13066678(-) (11)	NA	A8C750	Thyroid adenoma-associated protein homolog	AT3G55160.1	"unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). "	LOC_Os08g07290.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217695.1.S1_s_at	A	A1MS	POPTR_0017s07610	POPTR_0017s07610 (11)	scaffold_17:5917629-5917990(-) (11)	NA	Q9FZ95	Purine permease 3	AT1G28220.1	purine permease 3 	LOC_Os09g29239.1	"purine permease, putative, expressed"	Medtr3g150070.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217696.1.S1_s_at	A	A1TS	POPTR_0007s07710	POPTR_0007s07710 (11)	scaffold_7:6105184-6105292(-) (11)	NA	P54168	Uncharacterized protein ypgQ	AT1G17330.1	Metal-dependent phosphohydrolase 	LOC_Os10g34470.1	"HD domain containing protein 2, putative, expressed"	Medtr4g024680.1	"Metal-dependent phosphohydrolase, HD region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217699.1.S1_at	A	A1TS	POPTR_0024s00710	POPTR_0024s00710 (11)	scaffold_24:470267-470776(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217704.1.S1_at	A	A1TS	POPTR_0028s00400	POPTR_0028s00400 (11)	scaffold_28:187156-187469(+) (11)	NA	Q0ZIV6	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr5g062700.1	"hypothetical chloroplast RF2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217708.1.S1_at	A	A1TS	POPTR_0840s00200	POPTR_0840s00200 (11)	scaffold_16:7537610-7537946(+) (10)//scaffold_840:1849-2186(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217711.1.S1_at	A	A1MS	POPTR_0001s42070	POPTR_0001s42070 (10)	scaffold_1:41838324-41838536(-) (10)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr6g013320.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217711.1.S1_s_at	A	A1TS	POPTR_0001s42070	POPTR_0001s42070 (11)	scaffold_1:41839075-41839480(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr6g013320.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217715.1.S1_at	A	A1TS	POPTR_0005s19540	POPTR_0005s19540 (11)	scaffold_5:18394054-18394303(+) (11)	NA	NA	NA	AT1G58250.2	Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain 	LOC_Os03g47760.1	"SAB, putative, expressed"	Medtr3g149930.1	"SAB, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217718.1.S1_x_at	A	A8MS	POPTR_0011s03200	POPTR_0011s06540 (11)//POPTR_0011s03200 (11)//POPTR_0011s06220 (10)//POPTR_0011s08025 (10)//POPTR_0011s06475 (10)//POPTR_0011s06340 (9)//POPTR_0011s06490 (9)//POPTR_0011s06260 (9)	scaffold_11:3324525-3324792(-) (11)//scaffold_11:6334262-6334500(-) (10)//scaffold_11:6449559-6449797(-) (9)//scaffold_11:6555862-6556100(-) (9)//scaffold_11:6703574-6703807(-) (9)//scaffold_11:6910557-6910795(-) (10)//scaffold_11:6961762-6962000(-) (9)//scaffold_11:7005910-7006177(-) (11)//scaffold_11:7134368-7134606(-) (9)//scaffold_11:9074688-9074965(+) (10)	POPTR_0011s06120 (8)//POPTR_0011s06595 (8)//POPTR_0011s06460 (7)//POPTR_0011s06580 (6)	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.21773.1.S1_s_at	A	A1TS	POPTR_0010s03300	POPTR_0010s03300 (11)	scaffold_10:4051791-4052396(-) (11)	NA	Q5R4M2	Serine/threonine-protein kinase ULK4	AT5G18700.1	Protein kinase family protein with ARM repeat domain 	LOC_Os01g15480.1	"EMB3013, putative, expressed"	Medtr2g025470.1	Protein kinase; Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217730.1.S1_at	A	A1TS	POPTR_0001s39620	POPTR_0001s39620 (11)	scaffold_1:38839238-38839459(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217731.1.S1_at	A	A1TS	POPTR_0001s39560	POPTR_0001s39560 (11)	scaffold_1:38775683-38776506(+) (11)	NA	Q9EQ28	DNA polymerase delta subunit 3	AT1G78650.1	DNA-directed DNA polymerases 	LOC_Os01g10690.1	"POLD3 - Putative DNA polymerase delta complex subunit, expressed"	Medtr2g091630.1	"POLD3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217731.1.S1_x_at	A	A1TS	POPTR_0001s39560	POPTR_0001s39560 (11)	scaffold_1:38775641-38776571(+) (11)	NA	Q9EQ28	DNA polymerase delta subunit 3	AT1G78650.1	DNA-directed DNA polymerases 	LOC_Os01g10690.1	"POLD3 - Putative DNA polymerase delta complex subunit, expressed"	Medtr2g091630.1	"POLD3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217732.1.S1_at	A	A1TS	POPTR_0001s39550	POPTR_0001s39550 (11)	scaffold_1:38768849-38769448(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217739.1.S1_at	A	A1TS	POPTR_0084s00230	POPTR_0084s00230 (11)	scaffold_84:20203-21508(+) (11)	POPTR_0001s39380 (8)	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217740.1.S1_at	A	A1TS	POPTR_0001s39440	POPTR_0001s39440 (11)	scaffold_1:38615698-38616549(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g034580.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217741.1.S1_at	A	A1MS	POPTR_0014s11770	POPTR_0014s11770 (10)	scaffold_14:8738423-8738606(-) (10)	NA	Q6TUG0	DnaJ homolog subfamily B member 11	AT3G62600.1	DNAJ heat shock family protein 	LOC_Os05g06440.1	"dnaJ homolog subfamily B member 11 precursor, putative, expressed"	Medtr7g132750.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.217750.1.S1_at	A	A1TS	POPTR_2584s00200	POPTR_2584s00200 (11)	scaffold_2584:1879-2410(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217751.1.S1_s_at	A	A1TS	POPTR_0014s10810	POPTR_0014s10810 (11)	scaffold_14:8085501-8085756(+) (11)	POPTR_0005s12960 (6)	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT2G33580.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g018990.1	"Peptidoglycan-binding LysM; Tyrosine protein kinase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217752.1.S1_at	A	A1MS	POPTR_0011s06550	POPTR_0011s06550 (11)	scaffold_11:7041931-7042001(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217752.1.S1_x_at	A	A1MS	POPTR_0011s06550	POPTR_0011s06550 (11)	scaffold_11:7041931-7042301(-) (11)	POPTR_0011s03210 (6)	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217753.1.S1_s_at	A	A1TS	POPTR_0001s45600	POPTR_0001s45600 (11)	scaffold_1:46109120-46109613(-) (11)	NA	Q9ZWQ9	Flavonol synthase/flavanone 3-hydroxylase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.217755.1.S1_at	A	A1TS	POPTR_0002s21240	POPTR_0002s21240 (11)	scaffold_2:17555816-17556741(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217756.1.S1_at	A	A1TS	POPTR_0002s21260	POPTR_0002s21260 (11)	scaffold_2:17597939-17599038(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217757.1.S1_at	A	A1TS	POPTR_0002s21270	POPTR_0002s21270 (11)	scaffold_2:17630062-17631278(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217758.1.S1_s_at	A	A1MS	POPTR_1288s00200	POPTR_1288s00200 (11)	scaffold_1288:1714-1870(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217759.1.S1_x_at	A	A1TS	POPTR_0002s22910	POPTR_0002s22910 (9)	scaffold_2:20009325-20009972(-) (9)	NA	NA	NA	AT2G48060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os01g29230.1	expressed protein	Medtr1g111530.1	"Fibronectin, type III-like fold, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217760.1.S1_x_at	A	A1TS	POPTR_0010s03950	POPTR_0010s03950 (11)	scaffold_10:4668618-4668790(+) (11)//scaffold_11:12726153-12726289(+) (11)//scaffold_12:6056799-6056971(+) (11)//scaffold_13:8164807-8164943(+) (11)//scaffold_13:9828321-9834805(+) (11)//scaffold_136:51271-51443(-) (11)//scaffold_14:14891315-14891487(+) (11)//scaffold_14:17559028-17559164(+) (11)//scaffold_14:17569164-17569336(+) (11)//scaffold_15:2348368-2348504(+) (10)//scaffold_15:2357518-2357654(+) (10)//scaffold_15:7452658-7452794(-) (11)//scaffold_19:7824422-7824594(+) (11)//scaffold_19:7829742-7829896(+) (10)//scaffold_19:9135108-9135244(+) (11)//scaffold_2:17408300-17408580(+) (11)//scaffold_2:17539203-17539339(+) (11)//scaffold_2:17578666-17578766(-) (11)//scaffold_2:19973281-19973417(+) (11)//scaffold_2:19981488-19981624(+) (11)//scaffold_2166:404-612(-) (11)//scaffold_24:314740-314858(+) (10)//scaffold_2481:550-686(+) (11)//scaffold_534:8932-9086(-) (11)//scaffold_544:7724-7896(-) (11)//scaffold_544:13536-13708(-) (11)//scaffold_6:14742338-14742474(-) (11)//scaffold_6:20827959-20828131(-) (11)//scaffold_7:8193388-8193488(-) (11)//scaffold_7:8337649-8337749(-) (11)//scaffold_8:14462965-14463137(-) (11)//scaffold_8:16186048-16186220(+) (11)//scaffold_9:157388-157524(+) (11)//scaffold_9:371547-374748(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.217762.1.S1_at	A	A1MS	POPTR_0007s05950	POPTR_0007s05950 (11)	scaffold_7:4112364-4112488(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217764.1.S1_at	A	A1MS	POPTR_0001s07580	POPTR_0001s07580 (11)	scaffold_1:5738820-5738892(+) (11)	NA	Q9FMS6	Probable CCR4-associated factor 1 homolog 11	AT5G22250.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os04g58810.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr4g149570.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.217769.1.S1_at	A	A1TS	POPTR_0001s29520	POPTR_0001s29520 (11)	scaffold_1:28169314-28169701(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217775.1.S1_a_at	A	A1TS	POPTR_0006s19930	POPTR_0006s19930 (11)	scaffold_6:18958397-18958432(+) (11)	NA	Q6ZCX3	Formin-like protein 6	AT5G58160.1	actin binding 	LOC_Os02g55170.1	"formin-like protein 13, putative"	Medtr8g145580.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217775.1.S1_at	A	A1TS	POPTR_0006s19930	POPTR_0006s19930 (11)	scaffold_6:18958394-18959003(+) (11)	NA	Q6ZCX3	Formin-like protein 6	AT5G58160.1	actin binding 	LOC_Os02g55170.1	"formin-like protein 13, putative"	Medtr8g145580.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217779.1.S1_s_at	A	A1TS	POPTR_0008s22680	POPTR_0008s22680 (11)	scaffold_8:17362927-17363319(-) (11)	NA	O23470	GDSL esterase/lipase At4g16230	AT2G23540.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g19670.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g137420.1	hypothetical protein 	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.217782.1.S1_at	A	A2TS	POPTR_0019s04400	POPTR_0019s04400 (11)//POPTR_0019s04410 (11)	scaffold_19:4573908-4574093(+) (11)//scaffold_19:4584829-4585014(+) (11)	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217782.1.S1_x_at	A	A2TS	POPTR_0019s04400	POPTR_0019s04400 (11)//POPTR_0019s04410 (11)	scaffold_19:4573724-4574093(+) (11)//scaffold_19:4584645-4585014(+) (11)	POPTR_0019s04390 (6)	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217785.1.S1_at	A	A1TS	POPTR_0019s04480	POPTR_0019s04480 (9)	scaffold_19:4636987-4637331(-) (11)	NA	Q6K5P8	Putative germin-like protein 2-3	AT5G39150.1	RmlC-like cupins superfamily protein 	LOC_Os02g29020.1	Cupin domain containing protein	Medtr6g005280.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.217786.1.S1_at	A	A1TS	POPTR_0019s04490	POPTR_0019s04490 (11)	scaffold_19:4657847-4659237(+) (11)	NA	NA	NA	AT3G04160.1	unknown protein; Has 1711 Blast hits to 1353 proteins in 195 species: Archae - 0; Bacteria - 64; Metazoa - 693; Fungi - 201; Plants - 207; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink). 	LOC_Os04g28170.2	expressed protein	Medtr1g093080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217787.1.S1_at	A	A1TS	POPTR_0019s04500	POPTR_0019s04500 (11)	scaffold_19:4673477-4673868(+) (11)	NA	Q9SRT0	U-box domain-containing protein 9	AT3G07360.1	plant U-box 9 	LOC_Os02g28720.1	"spotted leaf 11, putative, expressed"	Medtr7g143240.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.217788.1.S1_at	A	A1TS	POPTR_0019s04510	POPTR_0019s04510 (11)	scaffold_19:4679203-4679868(-) (11)	NA	NA	NA	AT5G18310.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g143270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217789.1.S1_at	A	A1TS	POPTR_0019s04520	POPTR_0019s04520 (11)	scaffold_19:4697640-4698607(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217790.1.S1_at	A	A1TS	POPTR_0019s04570	POPTR_0019s04570 (11)	scaffold_19:4768483-4768925(+) (11)	NA	NA	NA	AT2G38430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g30140.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217790.1.S1_x_at	A	A1TS	POPTR_0019s04570	POPTR_0019s04570 (11)	scaffold_19:4767839-4768925(+) (11)	NA	NA	NA	AT2G38430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g30140.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217791.1.S1_x_at	A	A1TS	POPTR_0014s00960	POPTR_0014s00960 (11)	scaffold_14:914394-914480(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.217792.1.S1_s_at	A	A1TS	POPTR_0008s19090	POPTR_0008s19090 (11)	scaffold_8:13056855-13058122(-) (11)	NA	Q54RP0	UDP-galactose:fucoside alpha-3-galactosyltransferase	AT1G70630.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os05g43810.1	conserved hypothetical protein	Medtr8g081860.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217795.1.S1_at	A	A1TS	POPTR_0014s00470	POPTR_0014s00470 (11)	scaffold_14:381011-381236(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.217795.1.S1_x_at	A	A1TS	POPTR_0014s00470	POPTR_0014s00470 (11)	scaffold_14:380952-381393(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.217796.1.S1_s_at	A	A2TS	POPTR_0014s00380	POPTR_0014s00480 (11)//POPTR_0014s00380 (11)	scaffold_14:200211-200833(+) (11)//scaffold_14:383348-383970(+) (11)	POPTR_0014s01200 (7)	Q9LPT1	Probably inactive leucine-rich repeat receptor-like protein kinase At1g50610	AT3G20190.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g45240.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g010280.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217800.1.S1_x_at	A	A1TS	POPTR_0014s01140	POPTR_0014s01140 (11)	scaffold_14:1076791-1077200(+) (11)	POPTR_0014s01150 (6)//POPTR_0014s00470 (6)//POPTR_0014s00430 (6)	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g005880.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.217801.1.S1_at	A	A1TS	POPTR_0014s01150	POPTR_0014s01150 (11)	scaffold_14:648650-648780(+) (9)//scaffold_14:1089715-1089867(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g024300.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.217804.1.S1_at	A	A1TS	POPTR_0014s01170	POPTR_0014s01170 (11)	scaffold_14:1115055-1115457(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.217805.1.S1_at	A	A1TS	POPTR_0014s00200	POPTR_0014s00200 (11)	scaffold_14:1338-1708(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g039930.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.217806.1.S1_s_at	A	A1TS	POPTR_0014s01170	POPTR_0014s01170 (11)	scaffold_14:1116273-1116320(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.217812.1.S1_s_at	A	A1TS	POPTR_0647s00220	POPTR_0647s00220 (11)	scaffold_647:8909-9317(+) (11)	NA	Q9SHJ8	3-hydroxyisobutyryl-CoA hydrolase-like protein 5	AT1G06550.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217815.1.S1_s_at	A	A1TS	POPTR_0012s10230	POPTR_0012s10230 (11)	scaffold_12:11055468-11055524(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217816.1.S1_at	A	A1MS	POPTR_0016s04940	POPTR_0016s04940 (9)	scaffold_16:2975131-2975717(+) (9)	NA	A4IGM4	Hydroxysteroid 11-beta-dehydrogenase 1-like protein	AT5G50700.1	hydroxysteroid dehydrogenase 1 	LOC_Os12g27830.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.217816.1.S1_s_at	A	A1TS	POPTR_0016s04940	POPTR_0016s04940 (11)	scaffold_16:2975376-2975691(+) (11)	NA	A4IGM4	Hydroxysteroid 11-beta-dehydrogenase 1-like protein	AT5G50700.1	hydroxysteroid dehydrogenase 1 	LOC_Os12g27830.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.217819.1.S1_s_at	A	A1TS	POPTR_0002s25570	POPTR_0002s25570 (11)	scaffold_2:22655068-22655308(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT1G04150.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os02g57090.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217822.1.S1_at	A	A1TS	POPTR_0008s20200	POPTR_0008s20200 (11)	scaffold_8:13995101-13995671(+) (11)	NA	NA	NA	AT5G18860.1	inosine-uridine preferring nucleoside hydrolase family protein 	LOC_Os05g33644.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr8g139860.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217826.1.S1_at	A	A1TS	POPTR_0014s03210	POPTR_0014s03210 (11)	scaffold_14:2564588-2564724(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT1G49660.1	carboxyesterase 5 	LOC_Os09g28740.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217828.1.S1_at	A	A1TS	POPTR_0007s09280	POPTR_0007s09280 (11)	scaffold_7:8646742-8646854(-) (11)	NA	Q49L08	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	NA	NA	Medtr4g042160.1	"RNA polymerase Rpb1, domain 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217831.1.S1_at	A	A1TS	POPTR_0007s09240	POPTR_0007s09240 (11)	scaffold_7:8561350-8568009(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217832.1.S1_at	A	A1TS	POPTR_0007s09210	POPTR_0007s09210 (11)	scaffold_7:8515714-8516073(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217834.1.S1_at	A	A1MS	POPTR_0007s09160	POPTR_0007s09160 (11)	scaffold_7:8381586-8382579(+) (11)	NA	Q54C24	Vacuolar sorting protein 35	AT1G75850.1	VPS35 homolog B 	LOC_Os03g58700.1	"vacuolar protein sorting-associated protein 35, putative, expressed"	Medtr1g031540.1	Vacuolar protein sorting-associated protein 35 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217843.1.S1_at	A	A1TS	POPTR_0005s15400	POPTR_0005s15400 (9)	scaffold_5:12087410-12088005(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217844.1.S1_s_at	A	A2TS	POPTR_0005s15260	POPTR_0005s15380 (11)//POPTR_0005s15260 (11)	scaffold_5:12012892-12013402(+) (11)//scaffold_5:12083265-12083808(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38260.1	Protein kinase superfamily protein 	LOC_Os01g49560.1	expressed protein	Medtr7g093700.1	"receptor serine/threonine kinase PR5K, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217848.1.S1_at	A	A1MS	POPTR_0004s17050	POPTR_0004s17050 (11)	scaffold_4:17410113-17410147(-) (11)	POPTR_0009s12810 (6)	Q9SI62	Probable polyprenol reductase 2	AT2G16530.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os04g48750.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr4g097490.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.217848.1.S1_s_at	A	A1TS	POPTR_0004s17050	POPTR_0004s17050 (11)	scaffold_4:17410183-17410347(-) (11)	NA	Q9SI62	Probable polyprenol reductase 2	AT2G16530.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os04g48750.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr4g097490.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.217852.1.S1_at	A	A1TS	POPTR_2158s00210	POPTR_2158s00210 (11)	scaffold_2158:1302-1450(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217853.1.S1_s_at	A	A2TS	POPTR_0019s03030	POPTR_0019s03030 (10)//POPTR_0017s03180 (9)	scaffold_1:8574602-8574649(-) (9)//scaffold_17:2298327-2298751(+) (9)//scaffold_19:3006588-3007020(+) (10)//scaffold_2158:1539-1586(-) (9)//scaffold_6:19594538-19594585(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217858.1.S1_at	A	A2MS	POPTR_0001s06600	POPTR_1602s00200 (11)//POPTR_0001s06600 (11)	scaffold_1:5073480-5073519(+) (11)//scaffold_1602:4922-4961(+) (11)	NA	Q9FSB8	Chalcone synthase 2	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	GO:0009058|biosynthetic process	GO:0008415|acyltransferase activity	NA
PtpAffx.217858.1.S1_s_at	A	A2TS	POPTR_0001s06600	POPTR_0001s06600 (11)//POPTR_1602s00200 (10)	scaffold_1:5073352-5073474(+) (11)//scaffold_1602:4794-4916(+) (10)	NA	Q9FSB8	Chalcone synthase 2	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	GO:0009058|biosynthetic process	GO:0008415|acyltransferase activity	NA
PtpAffx.21786.1.S1_at	A	A1TS	POPTR_0007s13340	POPTR_0007s13340 (11)	scaffold_7:13462380-13463341(+) (11)	NA	O14530	Thioredoxin domain-containing protein 9	AT5G66410.1	phosducin-like protein 3 homolog 	LOC_Os05g16630.1	"thioredoxin domain-containing protein 9, putative, expressed"	Medtr8g092810.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217860.1.S1_s_at	A	A2TS	POPTR_0002s12790	POPTR_0515s00220 (11)//POPTR_0002s12790 (11)	scaffold_2:9532687-9533325(+) (11)//scaffold_515:3739-4376(-) (11)	NA	P17859	Alpha-amylase	AT4G25000.1	alpha-amylase-like 	LOC_Os08g36910.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
PtpAffx.217861.1.S1_at	A	A1TS	POPTR_0001s39910	POPTR_0001s39910 (11)	scaffold_1:39135406-39135546(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217862.1.S1_at	A	A1TS	POPTR_0001s39930	POPTR_0001s39930 (11)	scaffold_1:39182206-39182837(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217863.1.S1_at	A	A1TS	POPTR_0001s39960	POPTR_0001s39960 (11)	scaffold_1:39237066-39238052(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217864.1.S1_at	A	A1TS	POPTR_0001s39980	POPTR_0001s39980 (11)	scaffold_1:39310857-39311196(+) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g092470.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217865.1.S1_at	A	A1TS	POPTR_0001s39990	POPTR_0001s39990 (10)	scaffold_1:39322465-39325952(+) (10)	NA	B3DNN5	Anaphase-promoting complex subunit 6	AT1G78770.1	anaphase promoting complex 6 	LOC_Os03g13370.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g068500.1	"Cell division cycle protein 16 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217866.1.S1_s_at	A	A2TS	POPTR_0001s39990	POPTR_0001s40010 (11)//POPTR_0001s39990 (11)	scaffold_1:39319382-39319851(+) (11)//scaffold_1:39329972-39330441(+) (11)	NA	B3DNN5	Anaphase-promoting complex subunit 6	AT1G78770.1	anaphase promoting complex 6 	LOC_Os03g13370.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g068500.1	"Cell division cycle protein 16 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217867.1.S1_at	A	A1MS	POPTR_0001s40040	POPTR_0001s40040 (9)	scaffold_1:39348344-39349197(-) (9)	NA	P16273	Pathogen-related protein	AT1G78780.2	pathogenesis-related family protein 	LOC_Os01g53090.1	"pathogen-related protein, putative, expressed"	Medtr8g068150.1	"Pathogen-related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217868.1.S1_at	A	A1TS	POPTR_0001s40050	POPTR_0001s40050 (11)	scaffold_1:39361389-39362001(-) (11)	NA	O94738	"Alpha-1,3-mannosyltransferase ALG2"	AT1G78800.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g49960.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr1g132850.1	"Glycosyl transferase, group 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217869.1.S1_at	A	A1TS	POPTR_0001s40060	POPTR_0001s40060 (11)	scaffold_1:39379382-39380107(+) (11)	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT3G14880.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g48650.1	"transcription factor HBP-1b, putative, expressed"	Medtr2g091920.1	"tumor-related protein-like, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217870.1.S1_at	A	A1MS	POPTR_0001s40070	POPTR_0001s40070 (9)	scaffold_1:39384875-39385357(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217871.1.S1_at	A	A1TS	POPTR_0001s40110	POPTR_0001s40110 (11)	scaffold_1:39417069-39417650(-) (11)	NA	NA	NA	AT3G14900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17135 Blast hits to 10204 proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other Eukaryotes - 5958 (source: NCBI BLink). 	LOC_Os04g42030.1	expressed protein	Medtr5g087990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217872.1.S1_at	A	A1MS	POPTR_0001s40140	POPTR_0001s40140 (9)	scaffold_1:39452747-39453243(-) (11)	NA	NA	NA	AT1G78815.1	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g092170.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217873.1.S1_s_at	A	A1TS	POPTR_0010s11480	POPTR_0010s11480 (11)	scaffold_10:11727852-11727996(+) (11)	NA	P47818	Protein CCC1	AT2G01770.1	vacuolar iron transporter 1 	LOC_Os09g23300.1	"integral membrane protein, putative, expressed"	Medtr4g156680.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217875.1.S1_x_at	A	A2MS	POPTR_0017s00250	POPTR_0017s00250 (11)//POPTR_0017s00710 (10)	scaffold_17:41881-42130(-) (11)//scaffold_17:423628-423877(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217876.1.S1_at	A	A2TS	POPTR_0017s00240	POPTR_0017s00240 (11)//POPTR_0017s03800 (9)	scaffold_17:40332-40533(-) (11)//scaffold_17:2807065-2807204(+) (9)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217879.1.S1_s_at	A	A2TS	POPTR_0017s09260	POPTR_0017s09260 (11)//POPTR_0379s00230 (11)	scaffold_17:7883154-7883641(+) (11)//scaffold_379:12646-14389(-) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35370.1	"TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217880.1.S1_at	A	A1MS	POPTR_0002s22260	POPTR_0002s22260 (11)	scaffold_2:18956832-18957379(-) (11)	NA	Q6KHF9	Chaperone protein dnaJ	AT2G05230.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os02g30620.3	"dnaJ domain containing protein, expressed"	Medtr5g104830.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.217883.1.S1_s_at	A	A1TS	POPTR_0012s01500	POPTR_0012s01500 (11)	scaffold_12:1106172-1109232(+) (11)//scaffold_12:1123052-1123230(+) (11)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217885.1.S1_s_at	A	A1TS	POPTR_0003s14990	POPTR_0003s14990 (11)	scaffold_3:14893815-14894372(+) (11)	NA	P0C8S1	Probable disease resistance RPP8-like protein 2	AT1G53350.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os07g08890.1	"disease resistance protein RPM1, putative, expressed"	Medtr5g020990.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.217886.1.S1_at	A	A2MS	POPTR_0001s12780	POPTR_0001s12780 (11)//POPTR_0327s00210 (11)	scaffold_1:9894008-9894046(-) (11)//scaffold_327:6331-6369(+) (11)	NA	Q9M7K4	Potassium transporter 5	AT4G13420.1	high affinity K+ transporter 5 	LOC_Os01g70490.1	"potassium transporter, putative, expressed"	Medtr4g136710.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.217886.1.S1_s_at	A	A2TS	POPTR_0001s12780	POPTR_0001s12780 (11)//POPTR_0327s00210 (11)	scaffold_1:9894060-9894554(-) (11)//scaffold_327:5825-6317(+) (11)	NA	Q9M7K4	Potassium transporter 5	AT4G13420.1	high affinity K+ transporter 5 	LOC_Os01g70490.1	"potassium transporter, putative, expressed"	Medtr4g136710.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.217887.1.S1_s_at	A	A1TS	POPTR_0017s08070	POPTR_0017s08070 (11)	scaffold_17:6469145-6469462(+) (11)	NA	Q8LBB2	SNF1-related protein kinase regulatory subunit gamma 1	AT1G69800.1	Cystathionine beta-synthase (CBS) protein 	LOC_Os01g40420.1	"CBS domain containing membrane protein, putative, expressed"	Medtr5g039610.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217889.1.S1_at	A	A1TS	POPTR_0012s00240	POPTR_0012s00240 (10)	scaffold_12:24842-25319(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G71400.1	receptor like protein 12 	LOC_Os12g12010.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.217890.1.S1_at	A	A1TS	POPTR_0002s14670	POPTR_0002s14670 (11)	scaffold_2:10910846-10911372(-) (11)	NA	NA	NA	AT3G60740.1	ARM repeat superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217895.1.S1_at	A	A1TS	POPTR_2033s00200	POPTR_2033s00200 (11)	scaffold_2033:1871-2014(-) (11)	NA	Q6DBM8	Metal tolerance protein B	AT2G29410.1	metal tolerance protein B1 	LOC_Os05g03780.1	"cation efflux family protein, putative, expressed"	Medtr2g041270.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.2179.1.S1_at	A	A1TS	POPTR_0007s04780	POPTR_0007s04780 (11)	scaffold_7:2989367-2989897(+) (11)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g66120.1	"No apical meristem protein, putative, expressed"	Medtr3g142630.2	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.2179.2.S1_at	A	A1TS	POPTR_0005s07060	POPTR_0005s07060 (11)	scaffold_5:4731713-4732258(+) (11)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g66120.1	"No apical meristem protein, putative, expressed"	Medtr3g142630.2	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.217901.1.S1_at	A	A3TS	POPTR_0011s11420	POPTR_0011s11420 (11)//POPTR_0256s00210 (11)//POPTR_0011s11440 (10)	scaffold_11:14184773-14184901(+) (11)//scaffold_11:14209184-14209312(+) (10)//scaffold_256:40481-40609(-) (11)	NA	P49332	Probable glutathione S-transferase parC	AT1G17180.1	glutathione S-transferase TAU 25 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217901.1.S1_x_at	A	A3TS	POPTR_0256s00210	POPTR_0256s00210 (11)//POPTR_0011s11420 (10)//POPTR_0011s11440 (9)	scaffold_11:14184773-14184939(+) (10)//scaffold_11:14209184-14209350(+) (9)//scaffold_256:40443-40609(-) (11)	NA	P49332	Probable glutathione S-transferase parC	AT1G17180.1	glutathione S-transferase TAU 25 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217905.1.S1_x_at	A	A1TS	POPTR_0016s08410	POPTR_0016s08410 (11)	scaffold_16:6227758-6228080(-) (11)	NA	NA	NA	AT1G22460.1	O-fucosyltransferase family protein 	LOC_Os06g11600.3	"growth regulator related protein, putative, expressed"	Medtr3g150330.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217909.1.S1_at	A	A1TS	POPTR_0001s29810	POPTR_0001s29810 (10)	scaffold_1:28423203-28423671(-) (10)	POPTR_0001s29910 (7)//POPTR_0001s29870 (7)//POPTR_0001s29840 (7)//POPTR_0001s29900 (6)	Q9C7Z9	Serine carboxypeptidase-like 18	AT1G73300.1	serine carboxypeptidase-like 2 	LOC_Os10g01110.1	"OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g022160.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.217912.1.S1_at	A	A1MS	POPTR_0014s15110	POPTR_0014s15110 (11)	scaffold_14:11222452-11222578(-) (11)	POPTR_0014s15080 (7)//POPTR_0014s15050 (7)	Q8H1Z0	Protein WAX2	AT1G02205.2	Fatty acid hydroxylase superfamily 	LOC_Os10g33250.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.217912.1.S1_x_at	A	A1MS	POPTR_0014s15110	POPTR_0014s15110 (11)	scaffold_14:11222452-11222612(-) (11)	POPTR_0014s15080 (8)//POPTR_0014s15050 (8)	Q8H1Z0	Protein WAX2	AT1G02205.2	Fatty acid hydroxylase superfamily 	LOC_Os10g33250.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.217914.1.S1_at	A	A1TS	POPTR_0004s12060	POPTR_0004s12060 (10)	scaffold_4:10972557-10973790(+) (10)	NA	Q9LF41	Probable ubiquitin conjugation factor E4	AT5G15400.1	U-box domain-containing protein 	LOC_Os03g31400.1	"U-box domain-containing protein, putative, expressed"	Medtr6g013860.1	U box 	GO:0016567|protein ubiquitination||GO:0006511|ubiquitin-dependent protein catabolic process	GO:0034450|ubiquitin-ubiquitin ligase activity||GO:0005515|protein binding	GO:0000151|ubiquitin ligase complex
PtpAffx.217917.1.S1_at	A	A1TS	POPTR_0017s03310	POPTR_0017s03310 (11)	scaffold_17:2399976-2400572(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217918.1.S1_at	A	A4TS	POPTR_0017s00820	POPTR_0017s03320 (11)//POPTR_0017s00820 (11)//POPTR_0017s00830 (9)//POPTR_0017s03330 (9)	scaffold_17:615348-620272(+) (11)//scaffold_17:619749-628973(+) (11)//scaffold_17:622041-628937(+) (9)//scaffold_17:2389459-2393201(-) (11)//scaffold_17:2411572-2412095(-) (11)//scaffold_17:2416548-2417035(-) (9)	POPTR_0017s00810 (7)	Q9SHY2	Probable metal-nicotianamine transporter YSL7	AT1G65730.1	YELLOW STRIPE like 7 	LOC_Os04g44320.1	"transposon protein, putative, unclassified, expressed"	Medtr6g089710.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217918.1.S1_s_at	A	A2TS	POPTR_0017s00820	POPTR_0017s03320 (11)//POPTR_0017s00820 (11)	scaffold_17:615291-619741(+) (11)//scaffold_17:619692-628442(+) (11)//scaffold_17:2389935-2393242(-) (11)//scaffold_17:2411657-2412152(-) (11)	NA	Q9SHY2	Probable metal-nicotianamine transporter YSL7	AT1G65730.1	YELLOW STRIPE like 7 	LOC_Os04g44320.1	"transposon protein, putative, unclassified, expressed"	Medtr6g089710.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217918.1.S1_x_at	A	A2TS	POPTR_0017s03320	POPTR_0017s03320 (11)//POPTR_0017s00820 (10)	scaffold_17:615290-620265(+) (10)//scaffold_17:619691-628966(+) (10)//scaffold_17:2389466-2390040(-) (10)//scaffold_17:2411579-2412171(-) (11)	POPTR_0017s00830 (8)//POPTR_0017s03330 (8)//POPTR_0017s00810 (7)//POPTR_0017s03290 (6)	Q9SHY2	Probable metal-nicotianamine transporter YSL7	AT1G65730.1	YELLOW STRIPE like 7 	LOC_Os04g44320.1	"transposon protein, putative, unclassified, expressed"	Medtr6g089710.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217919.1.S1_s_at	A	A2TS	POPTR_0004s05340	POPTR_0017s00790 (11)//POPTR_0004s05340 (11)	scaffold_17:578610-579709(-) (11)//scaffold_4:4077310-4078409(+) (11)	NA	P17783	"Malate dehydrogenase, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.217923.1.S1_at	A	A1TS	POPTR_0017s03400	POPTR_0017s03400 (10)	scaffold_17:2495147-2495724(+) (11)	NA	P84527	Kiwellin	AT5G23350.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	AC235487_37.1	Rare lipoprotein A AC235487.1 151082-151744 E EGN_Mt090430 200	GO:0006952|defense response	GO:0008191|metalloendopeptidase inhibitor activity	NA
PtpAffx.217924.1.S1_at	A	A1TS	POPTR_0017s03440	POPTR_0017s03440 (11)	scaffold_17:2513582-2514167(-) (11)	NA	Q9SR01	"Pentatricopeptide repeat-containing protein At3g04750, mitochondrial"	AT3G04750.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g26070.1	"pentatricopeptide, putative, expressed"	Medtr3g132780.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217925.1.S1_at	A	A1TS	POPTR_0017s03460	POPTR_0017s03460 (11)	scaffold_17:2519892-2521709(+) (11)	NA	Q8WXB1	Protein FAM119A	AT1G73320.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g01180.1	expressed protein	Medtr6g083940.1	"Protein FAM119A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217926.1.S1_at	A	A1TS	POPTR_0017s03470	POPTR_0017s03470 (11)	scaffold_17:2523045-2523431(+) (11)	NA	NA	NA	AT1G54540.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os04g58090.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g084030.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.217927.1.S1_at	A	A1TS	POPTR_0017s03510	POPTR_0017s03510 (11)	scaffold_17:2549097-2549992(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217928.1.S1_at	A	A1TS	POPTR_0017s03520	POPTR_0017s03520 (11)	scaffold_17:2557375-2558435(+) (11)	NA	Q50EK6	Abietadienol/abietadienal oxidase	AT1G73340.1	Cytochrome P450 superfamily protein 	LOC_Os11g04710.1	"cytochrome P450, putative, expressed"	Medtr6g083890.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.217929.1.S1_at	A	A1TS	POPTR_0017s03530	POPTR_0017s03530 (11)	scaffold_17:2565351-2565745(+) (11)	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os10g35040.1	"receptor kinase like protein, putative"	Medtr6g083860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217930.1.S1_at	A	A1TS	POPTR_0017s03540	POPTR_0017s03540 (11)	scaffold_17:2567621-2568237(+) (11)	NA	O22588	Probable aquaporin TIP3-2	AT1G17810.1	beta-tonoplast intrinsic protein 	LOC_Os10g35050.1	"aquaporin protein, putative, expressed"	Medtr6g083850.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.217931.1.S1_at	A	A1TS	POPTR_0017s03560	POPTR_0017s03560 (11)	scaffold_17:2578206-2578785(-) (11)	NA	Q6ZPJ0	Testis-expressed sequence 2 protein	AT1G17820.1	Putative integral membrane protein conserved region (DUF2404) 	LOC_Os02g58110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217931.1.S1_s_at	A	A1TS	POPTR_0017s03560	POPTR_0017s03560 (11)	scaffold_17:2578581-2578804(-) (11)	NA	Q6ZPJ0	Testis-expressed sequence 2 protein	AT1G17820.1	Putative integral membrane protein conserved region (DUF2404) 	LOC_Os02g58110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217932.1.S1_s_at	A	A1TS	POPTR_0017s03570	POPTR_0017s03570 (11)	scaffold_17:2588920-2589137(-) (11)	NA	NA	NA	AT1G18340.1	basal transcription factor complex subunit-related 	LOC_Os02g03340.5	"RNA polymerase II transcription factor B subunit 4, putative, expressed"	Medtr3g097520.1	Transcription factor Tfb4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217933.1.S1_at	A	A1TS	POPTR_0017s03580	POPTR_0017s03580 (9)	scaffold_17:2598520-2599687(-) (10)	NA	NA	NA	AT1G73210.2	Protein of unknown function (DUF789) 	LOC_Os10g35150.1	expressed protein	Medtr8g096450.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217936.1.S1_at	A	A1TS	POPTR_0014s02490	POPTR_0014s02490 (11)	scaffold_14:2074924-2075591(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT4G34135.1	UDP-glucosyltransferase 73B2 	LOC_Os01g08110.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217937.1.S1_s_at	A	A1TS	POPTR_0014s02510	POPTR_0014s02510 (11)	scaffold_14:2084498-2084698(-) (11)	NA	NA	NA	AT4G06536.1	SPla/RYanodine receptor (SPRY) domain-containing protein 	LOC_Os02g40110.1	expressed protein	Medtr3g147400.1	SPla/RYanodine receptor SPRY 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217948.1.S1_at	A	A2TS	POPTR_0001s14660	POPTR_0001s14660 (11)//POPTR_0001s14650 (10)	scaffold_1:11510254-11511169(-) (10)//scaffold_1:11549398-11550315(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.217949.1.S1_x_at	A	A1TS	POPTR_0005s03260	POPTR_0005s03260 (11)	scaffold_5:2138668-2138915(-) (11)//scaffold_5:2138956-2139059(-) (11)//scaffold_5:2139172-2139275(-) (11)//scaffold_5:2139316-2139419(-) (11)//scaffold_5:2139388-2139779(-) (9)	NA	Q40392	TMV resistance protein N	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.217950.1.S1_s_at	A	A3TS	POPTR_0005s03270	POPTR_0005s03270 (11)//POPTR_0005s03470 (11)//POPTR_0005s03430 (9)	scaffold_5:2147439-2147662(-) (11)//scaffold_5:2245324-2245532(-) (9)//scaffold_5:2318058-2318281(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g40890.1	expressed protein	Medtr8g078000.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217953.1.S1_at	A	A1TS	POPTR_0019s02620	POPTR_0019s02620 (11)	scaffold_19:2428867-2429384(+) (11)	NA	Q6NQG7	RING-H2 finger protein ATL78	AT1G49230.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr3g144110.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217954.1.S1_x_at	A	A1TS	POPTR_0019s02640	POPTR_0019s02640 (11)	scaffold_19:2453269-2453421(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217955.1.S1_at	A	A1TS	POPTR_0019s02650	POPTR_0019s02650 (11)	scaffold_19:2458456-2458961(+) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76880.1	Duplicated homeodomain-like superfamily protein 	LOC_Os03g02240.1	"AT-GTL1, putative, expressed"	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217969.1.S1_at	A	A3TS	POPTR_0016s10350	POPTR_0016s10350 (11)//POPTR_0016s10340 (10)//POPTR_0016s10310 (9)	scaffold_16:8542482-8543022(-) (9)//scaffold_16:8579455-8579989(-) (10)//scaffold_16:8590012-8590546(-) (11)	POPTR_0016s10330 (8)	P17801	Putative receptor protein kinase ZmPK1	AT1G34300.1	lectin protein kinase family protein 	LOC_Os01g47840.1	"S-locus-like receptor protein kinase, putative, expressed"	Medtr7g064600.1	Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217970.1.S1_at	A	A1TS	POPTR_0017s10400	POPTR_0017s10400 (11)	scaffold_17:9627127-9627430(+) (11)	POPTR_0008s22940 (7)	Q6NLE0	F-box protein At5g41720	AT1G64295.1	F-box associated ubiquitination effector family protein 	LOC_Os08g43530.1	OsFBX306 - F-box domain containing protein	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217971.1.S1_x_at	A	A1MS	POPTR_0013s15090	POPTR_0013s15090 (11)	scaffold_13:15138322-15138951(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT1G06890.2	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os01g07310.1	"transporter-related, putative, expressed"	Medtr2g110080.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.217979.1.S1_s_at	A	A1TS	POPTR_0012s06380	POPTR_0012s06380 (11)	scaffold_12:6734352-6734703(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217981.1.S1_at	A	A1TS	POPTR_0012s06390	POPTR_0012s06390 (11)	scaffold_12:6753401-6753550(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217982.1.S1_s_at	A	A1TS	POPTR_0462s00200	POPTR_0462s00200 (11)	scaffold_462:4476-4702(+) (11)	NA	O65351	Subtilisin-like protease	AT3G14067.1	Subtilase family protein 	LOC_Os02g53860.1	"OsSub22 - Putative Subtilisin homologue, expressed"	Medtr8g025260.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217984.1.S1_at	A	A1TS	POPTR_0017s09380	POPTR_0017s09380 (11)	scaffold_17:7993760-7993892(+) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.217986.1.S1_s_at	A	A5TS	POPTR_0011s01000	POPTR_0011s01060 (11)//POPTR_0011s01000 (11)//POPTR_0062s00230 (11)//POPTR_0011s01190 (11)//POPTR_0011s01270 (11)	scaffold_11:524426-524462(+) (11)//scaffold_11:534512-534548(+) (11)//scaffold_11:557086-557122(+) (11)//scaffold_11:714115-714151(+) (11)//scaffold_11:778212-778248(+) (11)//scaffold_62:55789-55825(-) (11)	NA	NA	NA	AT3G54070.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217986.1.S1_x_at	A	A1TS	POPTR_0062s00230	POPTR_0062s00230 (11)	scaffold_62:55697-56276(-) (11)	POPTR_0011s01000 (8)//POPTR_0011s01270 (8)//POPTR_0011s01060 (6)	NA	NA	AT3G54070.1	Ankyrin repeat family protein 	NA	NA	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218.1.S1_at	A	A1TS	POPTR_0006s23570	POPTR_0006s23570 (11)	scaffold_6:22281461-22281788(+) (11)	NA	NA	NA	AT1G72510.2	Protein of unknown function (DUF1677) 	LOC_Os06g09900.1	expressed protein	Medtr8g025320.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218009.1.S1_s_at	A	A1TS	POPTR_0005s02810	POPTR_0005s02810 (11)	scaffold_5:1806129-1806239(+) (11)	NA	O24645	Anthranilate N-benzoyltransferase protein 1	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.218010.1.S1_s_at	A	A2TS	POPTR_0005s02810	POPTR_0005s02820 (11)//POPTR_0005s02810 (11)	scaffold_5:1805761-1806120(+) (11)//scaffold_5:1812814-1813173(+) (11)	NA	O24645	Anthranilate N-benzoyltransferase protein 1	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.218013.1.S1_at	A	A2MS	POPTR_0010s02050	POPTR_0044s00290 (11)//POPTR_0010s02050 (11)	scaffold_10:2365569-2365845(-) (11)//scaffold_44:191664-191940(-) (11)	NA	NA	NA	AT5G18750.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os06g34440.1	"dnaJ domain containing protein, expressed"	Medtr2g025500.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.218014.1.S1_at	A	A1TS	POPTR_0011s05750	POPTR_0011s05750 (11)	scaffold_11:5736192-5736787(-) (11)	NA	P32456	Interferon-induced guanylate-binding protein 2	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	GO:0006955|immune response	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.218015.1.S1_at	A	A1TS	POPTR_0011s05760	POPTR_0011s05760 (11)	scaffold_11:5756279-5757414(-) (11)	NA	O49255	NAC domain-containing protein 29	AT3G15510.1	NAC domain containing protein  2 	LOC_Os11g03300.1	"NAC domain transcription factor, putative, expressed"	Medtr2g110730.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.218016.1.S1_at	A	A2TS	POPTR_0011s05790	POPTR_0011s05790 (11)//POPTR_0011s05820 (11)	scaffold_11:5814829-5815471(-) (11)//scaffold_11:5835077-5835726(-) (11)	NA	O80961	MLO-like protein 12	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr4g108950.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.218016.1.S1_x_at	A	A2TS	POPTR_0011s05790	POPTR_0011s05790 (11)//POPTR_0011s05820 (11)	scaffold_11:5814419-5815471(-) (11)//scaffold_11:5834667-5835726(-) (11)	NA	O80961	MLO-like protein 12	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr4g108950.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.218017.1.S1_at	A	A1TS	POPTR_0011s05810	POPTR_0011s05810 (11)	scaffold_11:5822284-5822483(-) (11)	NA	Q8S985	Auxin response factor 15	AT2G33860.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os05g48870.1	"auxin response factor 15, putative, expressed"	Medtr2g018270.1	Transcriptional factor B3; Auxin response factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218017.1.S1_x_at	A	A1TS	POPTR_0011s05810	POPTR_0011s05810 (11)	scaffold_11:5822172-5822483(-) (11)	POPTR_0011s05830 (7)	Q8S985	Auxin response factor 15	AT2G33860.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os05g48870.1	"auxin response factor 15, putative, expressed"	Medtr2g018270.1	Transcriptional factor B3; Auxin response factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218018.1.S1_at	A	A1TS	POPTR_0011s05850	POPTR_0011s05850 (11)	scaffold_11:5890791-5891516(-) (11)	NA	O22308	Isoflavone-7-O-methyltransferase 6	AT4G35160.1	O-methyltransferase family protein 	LOC_Os05g43930.1	"O-methyltransferase, putative, expressed"	Medtr5g082590.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.218018.1.S1_s_at	A	A2TS	POPTR_0004s04980	POPTR_0004s04980 (11)//POPTR_0011s05850 (11)	scaffold_11:5890930-5891420(-) (11)//scaffold_4:3749240-3749744(-) (11)	NA	O22309	Isoflavone-7-O-methyltransferase 9	AT4G35160.1	O-methyltransferase family protein 	LOC_Os12g25450.1	"O-methyltransferase, putative, expressed"	Medtr5g082590.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.218019.1.S1_at	A	A1TS	POPTR_0011s05860	POPTR_0011s05860 (11)	scaffold_11:5894155-5894867(-) (11)	NA	O22309	Isoflavone-7-O-methyltransferase 9	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr7g035040.1	"O-methyltransferase, family 2; Dimerisation "	GO:0008152|metabolic process	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.218020.1.S1_s_at	A	A1TS	POPTR_0011s05890	POPTR_0011s05890 (11)	scaffold_11:5929336-5929547(+) (11)	NA	NA	NA	AT1G28520.2	vascular plant one zinc finger protein 	LOC_Os01g54930.1	"one zinc finger protein, putative, expressed"	Medtr4g109030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218021.1.S1_at	A	A1TS	POPTR_0011s05910	POPTR_0011s05910 (11)	scaffold_11:5954516-5955094(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G54010.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g26950.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr2g018360.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218023.1.S1_at	A	A1TS	POPTR_0011s05920	POPTR_0011s05920 (9)	scaffold_11:5959934-5960437(-) (11)	NA	NA	NA	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	NA	NA	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	NA	GO:0005515|protein binding	NA
PtpAffx.218025.1.S1_at	A	A1TS	POPTR_0011s06000	POPTR_0011s06000 (9)	scaffold_11:6020750-6021133(+) (9)	NA	Q9LNB9	LOB domain-containing protein 2	AT1G06280.1	LOB domain-containing protein 2 	NA	NA	Medtr4g109260.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218026.1.S1_at	A	A1TS	POPTR_0011s06020	POPTR_0011s06020 (11)	scaffold_11:6036302-6036625(-) (11)	NA	O49515	Ethylene-responsive transcription factor ERF091	AT4G18450.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g49010.1	"AP2 domain containing protein, expressed"	Medtr2g018540.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.218027.1.S1_at	A	A1TS	POPTR_0011s06030	POPTR_0011s06030 (11)	scaffold_11:6050259-6050734(+) (11)	NA	Q9FJ40	GDSL esterase/lipase At5g45960	AT5G45960.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g018560.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.218028.1.S1_s_at	A	A1TS	POPTR_0011s06040	POPTR_0011s06040 (11)	scaffold_11:6061115-6061478(+) (11)	NA	Q9FJ40	GDSL esterase/lipase At5g45960	AT5G45960.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g018560.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.218028.1.S1_x_at	A	A1TS	POPTR_0011s06040	POPTR_0011s06040 (11)	scaffold_11:6061112-6061578(+) (11)	NA	Q9FJ40	GDSL esterase/lipase At5g45960	AT5G45960.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g018560.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.218029.1.S1_at	A	A1TS	POPTR_0011s06060	POPTR_0011s06060 (11)	scaffold_11:6069159-6071311(+) (11)	NA	NA	NA	AT4G18470.1	negative regulator of systemic acquired resistance (SNI1) 	LOC_Os02g20870.2	"SNI1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218031.1.S1_at	A	A1TS	POPTR_0011s07810	POPTR_0011s07810 (9)	scaffold_11:8706661-8708525(-) (9)	NA	Q5ZMW3	Apoptosis inhibitor 5	AT2G34040.1	Apoptosis inhibitory protein 5 (API5) 	LOC_Os02g20930.1	"apoptosis inhibitor 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218039.1.S1_s_at	A	A1TS	POPTR_0016s10540	POPTR_0016s10540 (11)	scaffold_16:8845317-8845648(+) (11)	NA	Q9CPY6	Uncharacterized protein C17orf39 homolog	AT2G37680.1	CONTAINS InterPro DOMAIN/s: Vacuolar import/degradation protein Vid24 (InterPro:IPR018618); Has 318 Blast hits to 317 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 184; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g47550.2	expressed protein	Medtr4g018080.1	"Uncharacterized protein C17orf39, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218042.1.S1_at	A	A1MS	POPTR_0009s01380	POPTR_0009s01380 (11)	scaffold_9:1631545-1631856(-) (11)	NA	Q9ZUU9	ABC transporter G family member 3	AT2G28070.1	ABC-2 type transporter family protein 	LOC_Os03g64200.1	"ABC-2 type transporter, putative, expressed"	AC235487_18.1	ABC transporter related AC235487.1 100187-95222 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.218043.1.S1_at	A	A1MS	POPTR_0008s21030	POPTR_0008s21030 (9)	scaffold_8:15090386-15090443(+) (9)	NA	Q8RWY3	Putative chromatin-remodeling complex ATPase chain	AT3G06400.2	chromatin-remodeling protein 11 	LOC_Os01g27040.1	"chromatin-remodeling complex ATPase chain, putative, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	GO:0043044|ATP-dependent chromatin remodeling	GO:0031491|nucleosome binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0016585|chromatin remodeling complex
PtpAffx.218043.1.S1_s_at	A	A2TS	POPTR_0008s21030	POPTR_0008s21030 (11)//POPTR_0010s02180 (11)	scaffold_10:2488394-2489092(+) (11)//scaffold_8:15089579-15090276(+) (10)	NA	Q8RWY3	Putative chromatin-remodeling complex ATPase chain	AT3G06400.2	chromatin-remodeling protein 11 	LOC_Os01g27040.1	"chromatin-remodeling complex ATPase chain, putative, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	GO:0043044|ATP-dependent chromatin remodeling	GO:0031491|nucleosome binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0016585|chromatin remodeling complex
PtpAffx.218047.1.S1_at	A	A1TS	POPTR_0011s08290	POPTR_0011s08290 (11)	scaffold_11:9418860-9419298(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218049.1.S1_at	A	A1TS	POPTR_0011s08320	POPTR_0011s08320 (11)	scaffold_11:9577883-9578420(+) (11)	NA	Q8L868	"Glucan endo-1,3-beta-glucosidase 11"	AT4G18340.1	Glycosyl hydrolase superfamily protein 	LOC_Os06g34020.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g024570.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.218051.1.S1_s_at	A	A1TS	POPTR_0013s12470	POPTR_0013s12470 (11)	scaffold_13:13131615-13131983(-) (11)	NA	Q923G2	"DNA-directed RNA polymerases I, II, and III subunit RPABC3"	AT3G59600.1	RNA polymerase Rpb8 	LOC_Os06g48230.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed"	Medtr8g147760.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
PtpAffx.218058.1.S1_at	A	A1TS	POPTR_0017s03300	POPTR_0017s03300 (11)	scaffold_17:2396896-2397172(-) (11)	NA	C0LGT6	LRR receptor-like serine/threonine-protein kinase EFR	AT5G20480.1	EF-TU receptor 	LOC_Os02g12450.1	"receptor-like protein kinase 2 precursor, putative"	Medtr5g019030.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.218060.1.S1_x_at	A	A1TS	POPTR_0008s18480	POPTR_0008s18480 (10)	scaffold_8:12465421-12465781(-) (11)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218061.1.S1_s_at	A	A1TS	POPTR_0017s09060	POPTR_0017s09060 (11)	scaffold_17:7738838-7739183(-) (11)//scaffold_172:1985-2330(+) (11)//scaffold_18:1693055-1693400(+) (10)//scaffold_5:12916630-12916975(-) (11)	POPTR_0172s00195 (7)//POPTR_0005s16210 (7)	Q39008	Mitogen-activated protein kinase kinase kinase 1	AT4G08480.1	mitogen-activated protein kinase kinase kinase 9 	LOC_Os03g49640.2	"STE_MEKK_ste11_MAP3K.14 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g098410.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218062.1.S1_s_at	A	A2TS	POPTR_0219s00200	POPTR_0219s00200 (11)//POPTR_0219s00220 (9)	scaffold_219:2449-2820(-) (11)//scaffold_219:13761-27077(-) (10)//scaffold_219:21877-27138(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.218071.1.S1_at	A	A2TS	POPTR_0012s00845	POPTR_0039s00305 (11)//POPTR_0012s00845 (11)	scaffold_12:507911-507997(+) (11)//scaffold_39:110299-110385(-) (11)//scaffold_46:51960-52046(-) (11)	NA	NA	NA	AT3G11080.1	receptor like protein 35 	NA	NA	Medtr5g072640.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218071.1.S1_x_at	A	A2TS	POPTR_0012s00845	POPTR_0039s00305 (11)//POPTR_0012s00845 (11)	scaffold_12:507911-508005(+) (11)//scaffold_39:110291-110385(-) (11)//scaffold_46:51952-52046(-) (11)	NA	NA	NA	AT3G11080.1	receptor like protein 35 	NA	NA	Medtr5g072640.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218072.1.S1_s_at	A	A1TS	POPTR_0046s00370	POPTR_0046s00370 (11)	scaffold_12:506031-506069(-) (11)//scaffold_12:509704-509742(-) (11)//scaffold_12:2556367-2556405(+) (11)//scaffold_2073:61-99(-) (11)//scaffold_39:112018-112056(+) (10)//scaffold_46:9524-9562(+) (11)//scaffold_46:157688-157726(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218080.1.S1_at	A	A1TS	POPTR_1386s00200	POPTR_1386s00200 (11)	scaffold_1386:3754-5582(-) (11)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218081.1.S1_at	A	A1TS	POPTR_0015s02850	POPTR_0015s02850 (11)	scaffold_15:2463918-2466866(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218085.1.S1_at	A	A1TS	POPTR_0009s00220	POPTR_0009s00220 (10)	scaffold_9:69352-69795(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218086.1.S1_at	A	A1TS	POPTR_0009s00230	POPTR_0009s00230 (11)	scaffold_9:70057-70345(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218087.1.S1_at	A	A1TS	POPTR_0009s00240	POPTR_0009s00240 (11)	scaffold_9:71136-72324(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218087.1.S1_x_at	A	A1TS	POPTR_0009s00240	POPTR_0009s00240 (11)	scaffold_9:71061-72324(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218088.1.S1_at	A	A1TS	POPTR_0829s00200	POPTR_0829s00200 (11)	scaffold_829:567-992(-) (11)	NA	Q5JK32	Potassium transporter 5	AT4G13420.1	high affinity K+ transporter 5 	LOC_Os01g70490.1	"potassium transporter, putative, expressed"	Medtr8g025740.1	K+ potassium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218091.1.S1_at	A	A1TS	POPTR_0011s04630	POPTR_0011s04630 (11)	scaffold_11:4581476-4581663(-) (11)	NA	Q99685	Monoglyceride lipase	AT1G11090.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g37840.1	"lipase, putative, expressed"	Medtr1g108370.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218098.1.S1_s_at	A	A1TS	POPTR_0017s06970	POPTR_0017s06970 (11)	scaffold_17:5425639-5425919(-) (11)	NA	Q8GXL7	GATA transcription factor 24	AT3G21175.2	ZIM-like 1 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr4g121420.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.218098.1.S1_x_at	A	A1MS	POPTR_0017s06970	POPTR_0017s06970 (9)	scaffold_17:5425535-5425859(-) (11)	NA	Q8GXL7	GATA transcription factor 24	AT3G21175.2	ZIM-like 1 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr4g121420.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.218099.1.S1_at	A	A3MS	POPTR_0001s27260	POPTR_0001s27290 (11)//POPTR_0001s27270 (11)//POPTR_0001s27260 (11)	scaffold_1:26154644-26154682(+) (11)//scaffold_1:26172322-26172360(+) (11)//scaffold_1:26187660-26187698(+) (11)	NA	O65572	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218103.1.S1_s_at	A	A1TS	POPTR_0003s11080	POPTR_0003s11080 (11)	scaffold_3:11941465-11941891(+) (11)	NA	Q05085	Nitrate transporter 1.1	AT1G12110.1	nitrate transporter 1.1 	LOC_Os08g05910.1	"peptide transporter PTR2, putative, expressed"	Medtr5g012420.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.218104.1.S1_at	A	A1TS	POPTR_0004s20600	POPTR_0004s20600 (11)	scaffold_4:20076429-20076478(-) (11)//scaffold_4:20089815-20089859(-) (10)	NA	P80313	T-complex protein 1 subunit eta	AT3G11830.2	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g47320.1	"T-complex protein, putative, expressed"	Medtr5g094680.1	"GroEL-like chaperone, ATPase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218104.1.S1_x_at	A	A1TS	POPTR_0004s20600	POPTR_0004s20600 (11)	scaffold_4:20076238-20077448(-) (11)//scaffold_4:20089619-20090819(-) (10)	NA	P80313	T-complex protein 1 subunit eta	AT3G11830.2	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g47320.1	"T-complex protein, putative, expressed"	Medtr5g094680.1	"GroEL-like chaperone, ATPase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218105.1.S1_s_at	A	A2TS	POPTR_0004s20610	POPTR_0004s20610 (11)//POPTR_0004s20590 (10)	scaffold_4:20071170-20071640(-) (10)//scaffold_4:20082740-20083219(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218106.1.S1_at	A	A1TS	POPTR_0004s20590	POPTR_0004s20590 (11)	scaffold_4:20067697-20067749(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039420.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218106.1.S1_s_at	A	A1TS	POPTR_0004s20590	POPTR_0004s20590 (11)	scaffold_4:20067773-20068205(-) (11)//scaffold_4:20079342-20079774(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039420.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.21811.1.S1_at	A	A1TS	POPTR_0016s14250	POPTR_0016s14250 (11)	scaffold_16:13500105-13501320(+) (11)	NA	NA	NA	AT1G29690.1	MAC/Perforin domain-containing protein 	LOC_Os01g54510.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr4g036780.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218115.1.S1_s_at	A	A1TS	POPTR_0001s29280	POPTR_0001s29280 (11)	scaffold_1:28022708-28023313(+) (11)	NA	NA	NA	AT5G64470.2	Plant protein of unknown function (DUF828) 	LOC_Os02g02580.1	expressed protein	Medtr4g121840.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21812.1.S1_s_at	A	A1TS	POPTR_0005s08190	POPTR_0005s08190 (11)	scaffold_5:5635871-5636328(-) (11)	POPTR_0007s06010 (8)	NA	NA	AT2G22125.1	binding 	LOC_Os11g08090.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218120.1.S1_at	A	A1TS	POPTR_0011s01956	POPTR_0011s01956 (11)	scaffold_11:1607478-1607727(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g024390.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.218122.1.S1_s_at	A	A2TS	POPTR_0001s01660	POPTR_0001s01660 (11)//POPTR_0001s01700 (11)	scaffold_1:1234335-1234371(-) (11)//scaffold_1:1253812-1253848(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028050.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218129.1.S1_at	A	A1TS	POPTR_0015s02636	POPTR_0015s02636 (11)	scaffold_15:2251328-2252671(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218134.1.S1_at	A	A1TS	POPTR_0015s02840	POPTR_0015s02840 (11)	scaffold_15:2436343-2436577(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218139.1.S1_at	A	A2TS	POPTR_0013s12510	POPTR_0013s12510 (11)//POPTR_0151s00220 (10)	scaffold_13:13169509-13169930(-) (11)//scaffold_151:36898-37324(+) (11)	NA	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g19420.1	"O-methyltransferase, putative, expressed"	Medtr5g082640.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.218141.1.S1_at	A	A1TS	POPTR_0006s07390	POPTR_0006s07390 (11)	scaffold_6:5327793-5328181(-) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009880.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.218141.1.S1_x_at	A	A1TS	POPTR_0006s07390	POPTR_0006s07390 (10)	scaffold_6:5327793-5328178(-) (10)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009880.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.218149.1.S1_s_at	A	A1TS	POPTR_0010s01360	POPTR_0010s01360 (10)	scaffold_10:1238967-1239523(+) (10)//scaffold_10:1471561-1472117(+) (11)	NA	Q00917	Sucrose synthase 2	AT5G49190.1	sucrose synthase 2 	LOC_Os03g22120.1	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	GO:0009058|biosynthetic process	NA	NA
PtpAffx.218155.1.S1_s_at	A	A1TS	POPTR_0005s26670	POPTR_0005s26670 (11)	scaffold_5:24593143-24593703(-) (11)	NA	Q9LN22	"Pentatricopeptide repeat-containing protein At1g20300, mitochondrial"	AT1G20300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os09g37070.1	"pentatricopeptide, putative, expressed"	Medtr3g157290.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218156.1.S1_at	A	A1TS	POPTR_0018s03730	POPTR_0018s03730 (11)	scaffold_18:3173263-3173853(+) (11)	NA	NA	NA	AT2G24530.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g56300.1	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218157.1.S1_at	A	A1TS	POPTR_0018s03740	POPTR_0018s03740 (11)	scaffold_18:3187165-3187220(-) (11)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT5G24870.2	RING/U-box superfamily protein 	LOC_Os06g48040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g133350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218158.1.S1_at	A	A1TS	POPTR_0018s03750	POPTR_0018s03750 (11)	scaffold_18:3200329-3200900(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218159.1.S1_at	A	A1TS	POPTR_0018s03760	POPTR_0018s03760 (11)	scaffold_18:3213945-3214246(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218160.1.S1_at	A	A1TS	POPTR_0018s03790	POPTR_0018s03790 (10)	scaffold_18:3258079-3258678(+) (10)	NA	Q9ZQ23	Fasciclin-like arabinogalactan protein 3	AT2G24450.1	FASCICLIN-like arabinogalactan protein 3 precursor 	LOC_Os02g26320.1	"fasciclin-like arabinogalactan precursor protein, putative, expressed"	AC233655_31.1	Beta-Ig-H3/fasciclin AC233655.2 194118-193165 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218161.1.S1_at	A	A1TS	POPTR_0018s03800	POPTR_0018s03800 (11)	scaffold_18:3259310-3261381(-) (11)	NA	NA	NA	AT4G31360.1	selenium binding 	LOC_Os11g47770.1	"selT/selW/selH selenoprotein domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218162.1.S1_at	A	A1TS	POPTR_0018s04330	POPTR_0018s04330 (9)	scaffold_18:3652751-3652998(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218162.1.S1_x_at	A	A1TS	POPTR_0018s04330	POPTR_0018s04330 (9)	scaffold_18:3652751-3653277(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218163.1.S1_at	A	A1TS	POPTR_0018s03840	POPTR_0018s03840 (10)	scaffold_18:3278008-3280398(-) (11)	POPTR_0018s03810 (7)	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g040530.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218164.1.S1_x_at	A	A1TS	POPTR_0018s04330	POPTR_0018s04330 (11)	scaffold_18:3655116-3655572(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218165.1.S1_at	A	A1TS	POPTR_0018s04350	POPTR_0018s04350 (11)	scaffold_18:3291417-3291990(+) (10)//scaffold_18:3664070-3664643(+) (11)	POPTR_0018s03860 (8)	Q8L6Y3	Pentatricopeptide repeat-containing protein At5g24830	AT5G24830.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g05920.1	"Rf1, mitochondrial precursor, putative, expressed"	Medtr8g086350.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218166.1.S1_at	A	A1TS	POPTR_0018s03910	POPTR_0018s03910 (11)	scaffold_18:3332240-3334845(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT2G24430.2	NAC domain containing protein 38 	LOC_Os09g32260.2	"no apical meristem protein, putative, expressed"	Medtr1g009870.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.218167.1.S1_at	A	A1TS	POPTR_0018s03920	POPTR_0018s03920 (11)	scaffold_18:3337911-3338156(-) (11)	NA	NA	NA	AT4G31340.1	myosin heavy chain-related 	LOC_Os08g40790.1	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218168.1.S1_at	A	A1TS	POPTR_0018s03940	POPTR_0018s03940 (11)	scaffold_18:3372641-3373134(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039930.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218168.1.S1_x_at	A	A1TS	POPTR_0018s03940	POPTR_0018s03940 (11)	scaffold_18:3372641-3373134(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039930.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218169.1.S1_at	A	A1TS	POPTR_0018s03960	POPTR_0018s03960 (11)	scaffold_18:3393272-3393576(+) (11)	NA	Q9SY75	Putative pentatricopeptide repeat-containing protein At1g10330	AT1G10330.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g18950.1	"pentatricopeptide, putative, expressed"	Medtr4g108510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218170.1.S1_at	A	A1TS	POPTR_0018s03970	POPTR_0018s03970 (11)	scaffold_18:3398213-3398797(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218171.1.S1_at	A	A1TS	POPTR_0018s04010	POPTR_0018s04010 (11)	scaffold_18:3433622-3434678(+) (11)	NA	NA	NA	AT4G31270.1	sequence-specific DNA binding transcription factors 	LOC_Os02g07800.1	"transcription factor, putative, expressed"	Medtr1g010230.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218172.1.S1_at	A	A1TS	POPTR_0018s04020	POPTR_0018s04020 (11)	scaffold_18:3436058-3436618(-) (11)	NA	NA	NA	AT2G21080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT3G20300.1); Has 141 Blast hits to 141 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os08g41000.1	"extracellular ligand-gated ion channel, putative, expressed"	Medtr1g010240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218173.1.S1_at	A	A1TS	POPTR_0018s04030	POPTR_0018s04030 (11)	scaffold_18:3443027-3443561(+) (11)	NA	C0LGR9	Probable LRR receptor-like serine/threonine-protein kinase At4g31250	AT4G31250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g40990.1	"receptor-like protein kinase 1, putative, expressed"	Medtr1g010280.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218174.1.S1_at	A	A1MS	POPTR_0018s04040	POPTR_0018s04040 (11)	scaffold_18:3468123-3468661(+) (11)	NA	Q8VZQ0	Probable nucleoredoxin 3	AT4G31240.2	protein kinase C-like zinc finger protein 	LOC_Os04g51920.2	"protein disulfide isomerase, putative, expressed"	Medtr3g133070.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin domain 2; C1-like; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218175.1.S1_at	A	A1MS	POPTR_0018s04050	POPTR_0018s04050 (11)	scaffold_18:3472174-3472667(+) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT2G24370.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os06g09230.2	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218175.1.S1_x_at	A	A1MS	POPTR_0018s04050	POPTR_0018s04050 (11)	scaffold_18:3472093-3472667(+) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT2G24370.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os06g09230.2	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218176.1.S1_at	A	A1TS	POPTR_0018s04050	POPTR_0018s04050 (10)	scaffold_18:3473077-3473667(+) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT2G24370.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os06g09230.2	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218178.1.S1_at	A	A1TS	POPTR_0018s04070	POPTR_0018s04070 (11)	scaffold_18:3481584-3481948(-) (11)	NA	NA	NA	AT4G31210.1	"DNA topoisomerase, type IA, core "	LOC_Os06g16980.2	"DNA topoisomerase I family protein, expressed"	Medtr1g010540.1	"DNA topoisomerase 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218180.1.S1_at	A	A1TS	POPTR_0018s04140	POPTR_0018s04140 (10)	scaffold_18:3511032-3513952(+) (10)	NA	Q3E6S8	Putative protease Do-like 14	AT5G27660.1	Trypsin family protein with PDZ domain 	LOC_Os09g26550.1	"protease Do-like 14, putative, expressed"	Medtr5g073180.1	"PDZ/DHR/GLGF; Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218181.1.S1_at	A	A1MS	POPTR_0394s00220	POPTR_0394s00220 (11)	scaffold_18:3519993-3521194(-) (9)//scaffold_394:7675-8880(+) (11)	NA	Q3E6S8	Putative protease Do-like 14	AT5G27660.1	Trypsin family protein with PDZ domain 	LOC_Os01g17070.2	"OsDegp1 - Putative Deg protease homologue, expressed"	Medtr5g073040.1	"PDZ/DHR/GLGF; Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21819.2.A1_s_at	A	A1TS	POPTR_0013s12400	POPTR_0013s12400 (11)	scaffold_13:13038920-13038956(+) (11)	NA	NA	NA	AT3G58110.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1). 	LOC_Os06g34710.1	expressed protein	AC233675_21.1	hypothetical protein AC233675.1 101243-98727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21819.3.S1_a_at	A	A1TS	POPTR_0001s36870	POPTR_0001s36870 (11)	scaffold_1:35627825-35627970(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G30360.1	Early-responsive to dehydration stress protein (ERD4) 	LOC_Os07g05570.1	"ERD4 protein, putative, expressed"	Medtr2g022330.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.21819.4.S1_at	A	A1TS	POPTR_0001s36870	POPTR_0001s36870 (11)	scaffold_1:35625679-35626110(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G30360.1	Early-responsive to dehydration stress protein (ERD4) 	LOC_Os07g05570.1	"ERD4 protein, putative, expressed"	Medtr2g022330.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.21819.6.A1_at	A	A1TS	POPTR_0013s12400	POPTR_0013s12400 (10)	scaffold_13:13039467-13039625(+) (11)	NA	NA	NA	AT3G58110.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1). 	LOC_Os06g34710.1	expressed protein	AC233675_21.1	hypothetical protein AC233675.1 101243-98727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218190.1.S1_at	A	A1TS	POPTR_0001s31060	POPTR_0001s31060 (9)	scaffold_1:29445116-29449660(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT4G34135.1	UDP-glucosyltransferase 73B2 	LOC_Os05g08480.1	"cytokinin-O-glucosyltransferase 1, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218193.1.S1_s_at	A	A1TS	POPTR_0002s24930	POPTR_0002s24930 (11)	scaffold_2:22134222-22135206(-) (11)	NA	Q06915	"Probable glucan endo-1,3-beta-glucosidase A6"	AT3G07320.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os09g32550.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g012760.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.218194.1.S1_s_at	A	A7TS	POPTR_0007s06260	POPTR_0007s06390 (11)//POPTR_0007s06400 (11)//POPTR_0007s06410 (11)//POPTR_0007s06370 (11)//POPTR_0007s06360 (11)//POPTR_0007s06260 (11)//POPTR_0007s06380 (9)	scaffold_7:4416059-4416225(+) (11)//scaffold_7:4453276-4453443(+) (11)//scaffold_7:4559735-4559901(+) (11)//scaffold_7:4571387-4571553(+) (11)//scaffold_7:4625880-4625990(+) (9)//scaffold_7:4701618-4701784(+) (11)//scaffold_7:4721992-4722158(+) (11)//scaffold_7:4739944-4740110(+) (11)	NA	P24465	Cytochrome P450 71A1	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os09g26970.1	"retrotransposon protein, putative, unclassified"	Medtr2g078060.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.2182.1.S1_a_at	A	A1TS	POPTR_0010s02070	POPTR_0010s02070 (11)	scaffold_10:2387845-2388229(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.218205.1.S1_s_at	A	A6TS	POPTR_0003s02290	POPTR_0005s01340 (11)//POPTR_0018s03140 (11)//POPTR_0005s01160 (11)//POPTR_0005s01120 (11)//POPTR_0005s00960 (11)//POPTR_0003s02290 (11)	scaffold_18:2794227-2794269(-) (11)//scaffold_3:2372154-2372196(-) (11)//scaffold_5:457910-457952(-) (11)//scaffold_5:647560-647602(-) (11)//scaffold_5:689708-689750(-) (11)//scaffold_5:739650-739692(-) (11)//scaffold_5:893396-893438(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028060.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218211.1.S1_at	A	A1TS	POPTR_0012s14900	POPTR_0012s14900 (11)	scaffold_12:14610607-14611118(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218212.1.S1_at	A	A1TS	POPTR_0012s12980	POPTR_0012s12980 (11)	scaffold_12:13310193-13310272(-) (11)	NA	Q9NZC7	WW domain-containing oxidoreductase	AT4G23430.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218212.1.S1_s_at	A	A1TS	POPTR_0012s12980	POPTR_0012s12980 (11)	scaffold_12:13306303-13310617(-) (11)	NA	Q9NZC7	WW domain-containing oxidoreductase	AT4G23430.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218216.1.S1_at	A	A1MS	POPTR_0001s25900	POPTR_0001s25900 (9)	scaffold_1:24983982-24984287(+) (9)	NA	Q29AU6	O-glucosyltransferase rumi	AT1G07220.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os05g05690.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218216.1.S1_x_at	A	A1MS	POPTR_0001s25900	POPTR_0001s25900 (9)	scaffold_1:24983784-24984287(+) (9)	NA	Q29AU6	O-glucosyltransferase rumi	AT1G07220.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os05g05690.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218220.1.S1_x_at	A	A1TS	POPTR_0036s00210	POPTR_0036s00210 (11)	scaffold_36:92668-92946(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218223.1.S1_at	A	A1TS	POPTR_0001s39320	POPTR_0001s39320 (9)	scaffold_1:38511210-38511625(-) (9)	POPTR_0001s39360 (8)	C0LGG7	Probable LRR receptor-like serine/threonine-protein kinase At1g53420	AT1G53420.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218224.1.S1_x_at	A	A1TS	POPTR_0019s06750	POPTR_0019s06750 (11)	scaffold_19:7324150-7324370(-) (11)//scaffold_19:7604256-7604430(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218225.1.S1_at	A	A1TS	POPTR_0019s06950	POPTR_0019s06950 (11)	scaffold_19:7579834-7580490(+) (11)	NA	NA	NA	AT3G03130.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17160.1); Has 7130 Blast hits to 3690 proteins in 504 species: Archae - 22; Bacteria - 2666; Metazoa - 1654; Fungi - 721; Plants - 246; Viruses - 56; Other Eukaryotes - 1765 (source: NCBI BLink). 	LOC_Os04g50960.1	expressed protein	Medtr4g106890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218228.1.S1_at	A	A1TS	POPTR_0019s06330	POPTR_0019s06330 (11)	scaffold_19:7030511-7031500(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218228.1.S1_s_at	A	A1TS	POPTR_0019s06330	POPTR_0019s06330 (11)	scaffold_19:7030326-7031321(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218230.1.S1_s_at	A	A1TS	POPTR_0002s17600	POPTR_0002s17600 (11)	scaffold_2:13420072-13420236(-) (11)	NA	NA	NA	AT3G61870.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). "	LOC_Os02g03010.1	expressed protein	Medtr7g145810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218236.1.S1_at	A	A1MS	POPTR_0011s01160	POPTR_0011s01160 (11)	scaffold_11:684041-684332(+) (11)	POPTR_0011s01110 (8)	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	LOC_Os03g61660.1	"retrotransposon protein, putative, unclassified"	Medtr5g092800.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218236.1.S1_x_at	A	A1MS	POPTR_0011s01160	POPTR_0011s01160 (11)	scaffold_11:684041-684714(+) (11)	POPTR_0011s01110 (8)	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	LOC_Os03g61660.1	"retrotransposon protein, putative, unclassified"	Medtr5g092800.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218237.1.S1_at	A	A1TS	POPTR_0019s00920	POPTR_0019s00920 (11)	scaffold_19:699280-699445(-) (11)	NA	Q40392	TMV resistance protein N	AT5G11250.1	Disease resistance protein (TIR-NBS-LRR class) 	NA	NA	Medtr7g088460.1	TIR; Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.218243.1.S1_at	A	A1TS	POPTR_0016s13860	POPTR_0016s13860 (11)	scaffold_16:13040976-13041490(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218244.1.S1_at	A	A2TS	POPTR_0009s00330	POPTR_0009s00330 (11)//POPTR_0009s00350 (9)	scaffold_9:108511-109023(+) (9)//scaffold_9:174675-175187(+) (11)//scaffold_9:190763-191274(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218246.1.S1_at	A	A1TS	POPTR_0014s19540	POPTR_0014s19540 (11)	scaffold_14:17383657-17383960(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218247.1.S1_s_at	A	A1TS	POPTR_0014s19520	POPTR_0014s19520 (11)	scaffold_14:17344392-17344896(+) (11)	NA	Q6NLE0	F-box protein At5g41720	AT1G64295.1	F-box associated ubiquitination effector family protein 	LOC_Os08g43530.1	OsFBX306 - F-box domain containing protein	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218253.1.S1_at	A	A1TS	POPTR_0012s05380	POPTR_0012s05380 (11)	scaffold_12:5032183-5032421(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218254.1.S1_x_at	A	A1MS	POPTR_0009s16820	POPTR_0009s16820 (9)	scaffold_9:12689726-12690030(+) (9)	POPTR_0009s16790 (6)	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218256.1.S1_at	A	A1TS	POPTR_0001s23630	POPTR_0001s23630 (11)	scaffold_1:23018099-23018573(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218266.1.S1_s_at	A	A2TS	POPTR_0001s28240	POPTR_0009s07430 (11)//POPTR_0001s28240 (11)	scaffold_1:27005069-27005141(-) (11)//scaffold_9:6931755-6931827(-) (11)	NA	NA	NA	AT5G13500.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g32060.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21827.1.A1_at	A	A1TS	POPTR_0004s21690	POPTR_0004s21690 (11)	scaffold_4:20736056-20736525(-) (11)	NA	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os10g39440.1	"transporter family protein, putative, expressed"	Medtr3g164110.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.218276.1.S1_at	A	A1TS	POPTR_0015s02290	POPTR_0015s02290 (11)	scaffold_15:1617923-1618290(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g40920.1	"pentatricopeptide, putative, expressed"	Medtr4g128730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218277.1.S1_at	A	A1TS	POPTR_0015s02300	POPTR_0015s02300 (9)	scaffold_15:1620647-1621619(-) (10)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT5G53190.1	Nodulin MtN3 family protein 	LOC_Os01g12130.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g124590.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218279.1.S1_at	A	A1TS	POPTR_0015s02320	POPTR_0015s02320 (11)	scaffold_15:1641148-1642016(-) (11)	NA	NA	NA	AT5G24120.1	sigma factor E 	LOC_Os05g50930.2	"RNA polymerase sigma factor, putative, expressed"	Medtr3g124610.1	Sigma-70 region 2; Winged helix repressor DNA-binding; ; 	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.218280.1.S1_at	A	A1TS	POPTR_0015s06170	POPTR_0015s06170 (9)	scaffold_15:6449131-6449565(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218281.1.S1_at	A	A1TS	POPTR_0015s06160	POPTR_0015s06160 (10)	scaffold_15:6441297-6442828(+) (10)	NA	Q700C7	Transcription factor SPEECHLESS	AT5G53210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os06g33450.2	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr3g124650.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.218282.1.S1_at	A	A1TS	POPTR_0015s06150	POPTR_0015s06150 (11)	scaffold_15:6423038-6424748(+) (11)	NA	Q05865	Folylpolyglutamate synthase	AT5G41480.1	Folylpolyglutamate synthetase family protein 	LOC_Os12g42870.1	"Mur ligase family protein, putative, expressed"	Medtr7g121200.1	Folylpolyglutamate synthetase 	GO:0009058|biosynthetic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.218283.1.S1_at	A	A1TS	POPTR_0015s06140	POPTR_0015s06140 (11)	scaffold_15:6411990-6412849(-) (11)	NA	NA	NA	AT5G53220.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g12180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218284.1.S1_at	A	A1TS	POPTR_0015s06130	POPTR_0015s06130 (11)	scaffold_15:6409196-6409677(-) (11)	NA	Q9FK16	Arabinogalactan peptide 22	AT5G53250.1	arabinogalactan protein 22 	NA	NA	Medtr3g124660.1	Protein of unknown function DUF1070 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218285.1.S1_at	A	A1TS	POPTR_0015s06110	POPTR_0015s06110 (11)	scaffold_15:6395773-6396234(+) (11)	NA	Q94DB8	Inorganic phosphate transporter 1-11	AT5G43360.1	phosphate transporter 1;3 	LOC_Os01g46860.1	"inorganic phosphate transporter, putative"	Medtr5g076920.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.218286.1.S1_at	A	A1TS	POPTR_0015s06090	POPTR_0015s06090 (11)	scaffold_15:6386772-6389682(-) (11)	NA	Q10137	Sec14 cytosolic factor	AT1G14820.3	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g70210.1	"CRAL/TRIO domain containing protein, expressed"	Medtr3g151400.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218287.1.S1_at	A	A1TS	POPTR_0015s06080	POPTR_0015s06080 (11)	scaffold_15:6382302-6383108(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218288.1.S1_at	A	A1TS	POPTR_0015s06070	POPTR_0015s06070 (11)	scaffold_15:6369214-6369803(+) (11)	NA	Q9SUE3	Ethylene-responsive transcription factor CRF4	AT4G27950.1	cytokinin response factor 4 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr3g124710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.218289.1.S1_at	A	A1TS	POPTR_0015s06050	POPTR_0015s06050 (11)	scaffold_15:6343284-6344992(-) (11)	NA	P34109	Myosin ID heavy chain	AT5G53310.1	myosin heavy chain-related 	LOC_Os01g43360.1	"myosin-Ie, putative, expressed"	Medtr3g124750.1	Myosin tail 2 	NA	GO:0003774|motor activity	GO:0016459|myosin complex
PtpAffx.218290.1.S1_s_at	A	A1TS	POPTR_0015s06040	POPTR_0015s06040 (11)	scaffold_15:6340462-6341040(+) (11)	NA	Q9SUQ3	Probable inactive receptor kinase At4g23740	AT4G23740.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g12390.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g124770.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218291.1.S1_at	A	A1TS	POPTR_0015s06020	POPTR_0015s06020 (11)	scaffold_15:6323822-6326842(+) (11)	NA	Q94F27	"Probable beta-1,3-galactosyltransferase 11"	AT5G53340.1	Galactosyltransferase family protein 	LOC_Os08g29710.1	"galactosyltransferase family protein, putative, expressed"	Medtr5g009800.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.218294.1.S1_at	A	A1TS	POPTR_0015s05970	POPTR_0015s05970 (11)	scaffold_15:6269571-6271018(-) (11)	NA	Q9UNS1	Protein timeless homolog	AT5G52910.1	timeless family protein 	LOC_Os05g11980.1	"timeless protein, expressed"	Medtr1g125810.1	Timeless protein; Timeless C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218295.1.S1_at	A	A1TS	POPTR_0015s05940	POPTR_0015s05940 (11)	scaffold_15:6255701-6256161(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os02g17400.1	"leucine rich repeat protein, putative"	Medtr5g093230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.218295.1.S1_x_at	A	A1TS	POPTR_0015s05940	POPTR_0015s05940 (11)	scaffold_15:6255701-6256161(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os02g17400.1	"leucine rich repeat protein, putative"	Medtr5g093230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.218296.1.S1_at	A	A1TS	POPTR_0015s05910	POPTR_0015s05910 (11)	scaffold_15:6224400-6224983(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218297.1.S1_s_at	A	A4TS	POPTR_0015s05870	POPTR_0015s05920 (9)//POPTR_0015s05940 (9)//POPTR_0015s05890 (9)//POPTR_0015s05870 (9)	scaffold_15:6197774-6197806(-) (9)//scaffold_15:6218509-6218541(-) (9)//scaffold_15:6232760-6232792(-) (9)//scaffold_15:6256663-6256695(-) (9)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os01g41750.1	expressed protein	Medtr5g093230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.21830.1.A1_at	A	A2TS	POPTR_0004s13310	POPTR_0004s13310 (11)//POPTR_0023s00200 (10)	scaffold_23:8397-9317(-) (11)//scaffold_4:12871056-12871976(+) (11)	NA	Q9LVQ0	Pectinesterase 31	AT3G29090.1	pectin methylesterase 31 	LOC_Os10g26680.1	"pectinesterase, putative, expressed"	Medtr7g010850.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.218300.1.S1_at	A	A1TS	POPTR_0001s32840	POPTR_0001s32840 (11)	scaffold_1:31132484-31132683(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218308.1.S1_at	A	A1TS	POPTR_0535s00200	POPTR_0535s00200 (11)	scaffold_535:3784-3908(-) (11)	NA	NA	NA	AT4G36760.1	aminopeptidase P1 	LOC_Os06g45360.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g019520.1	Creatinase; Peptidase M24 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218310.1.S1_s_at	A	A1TS	POPTR_0007s12410	POPTR_0007s12410 (11)	scaffold_535:10401-10558(+) (11)//scaffold_7:12727005-12727162(+) (11)	POPTR_0535s00230 (7)	Q40287	Anthocyanidin 3-O-glucosyltransferase 5	AT3G50740.1	UDP-glucosyl transferase 72E1 	LOC_Os01g43280.1	"hydroquinone glucosyltransferase, putative, expressed"	Medtr5g019500.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218312.1.S1_at	A	A1TS	POPTR_0001s27740	POPTR_0001s27740 (11)	scaffold_1:26593596-26594119(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g29700.1	"retrotransposon protein, putative, unclassified"	Medtr5g048830.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218316.1.S1_at	A	A1TS	POPTR_0016s03900	POPTR_0016s03900 (11)	scaffold_16:2179790-2180206(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218317.1.S1_s_at	A	A6TS	POPTR_0005s13330	POPTR_0005s13330 (11)//POPTR_0005s18760 (11)//POPTR_0005s18380 (11)//POPTR_0005s13340 (11)//POPTR_0005s18710 (11)//POPTR_0005s18750 (11)	scaffold_5:10491760-10491875(-) (11)//scaffold_5:10497743-10497858(-) (11)//scaffold_5:16537188-16537303(+) (11)//scaffold_5:16945890-16946005(-) (11)//scaffold_5:17042702-17042817(+) (11)//scaffold_5:17048438-17048553(+) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218323.1.S1_s_at	A	A2TS	POPTR_0012s07300	POPTR_0012s07300 (11)//POPTR_0012s07310 (10)	scaffold_12:8169635-8170606(-) (11)//scaffold_12:8195832-8197003(-) (10)	NA	Q9AXH9	Ent-kaurenoic acid oxidase 1	AT1G05160.1	"cytochrome P450, family 88, subfamily A, polypeptide 3 "	LOC_Os10g23180.1	"cytochrome P450, putative, expressed"	Medtr5g014420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.218325.1.S1_s_at	A	A2MS	POPTR_0013s10770	POPTR_0013s10770 (11)//POPTR_0043s00220 (11)	scaffold_13:11083392-11083760(-) (11)//scaffold_43:32234-32602(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT1G34190.1	NAC domain containing protein 17 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr5g084760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.218332.1.S1_s_at	A	A2TS	POPTR_0005s03940	POPTR_0005s03940 (11)//POPTR_0005s03950 (11)	scaffold_5:2607741-2608213(-) (11)//scaffold_5:2631725-2632197(+) (11)	NA	P93149	Licodione synthase	AT5G06900.1	"cytochrome P450, family 93, subfamily D, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g018110.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.218334.1.S1_at	A	A1TS	POPTR_0018s11690	POPTR_0018s11690 (9)	scaffold_18:6362652-6362822(-) (11)//scaffold_18:12339022-12339192(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218335.1.S1_at	A	A1TS	POPTR_0004s22540	POPTR_0004s22540 (10)	scaffold_1:17363094-17363349(-) (9)//scaffold_4:21407665-21407921(+) (10)	NA	NA	NA	AT2G28120.1	Major facilitator superfamily protein 	LOC_Os03g58580.1	"nodulin, putative, expressed"	AC233660_5.1	Nodulin-like; Major facilitator superfamily MFS_1 AC233660.2 23536-25326 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218341.1.S1_at	A	A1MS	POPTR_0001s21270	POPTR_0001s21270 (10)	scaffold_1:19663997-19664069(+) (10)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.3	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.2	"ATPase, E1-E2 type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218341.1.S1_s_at	A	A1TS	POPTR_0001s21270	POPTR_0001s21270 (11)	scaffold_1:19664480-19664612(+) (11)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.3	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.2	"ATPase, E1-E2 type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218343.1.S1_at	A	A1TS	POPTR_0017s10030	POPTR_0017s10030 (11)	scaffold_17:8863930-8864324(-) (11)	NA	O54922	Exocyst complex component 7	AT5G13990.1	exocyst subunit exo70 family protein C2 	LOC_Os11g06700.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr7g027250.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.218344.1.S1_s_at	A	A1TS	POPTR_0002s24180	POPTR_0002s24180 (11)	scaffold_2:21611931-21612308(+) (11)	NA	NA	NA	AT5G48850.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g43040.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g064920.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218345.1.S1_at	A	A1TS	POPTR_0007s02830	POPTR_0007s02830 (11)	scaffold_7:1641773-1641973(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.218349.1.S1_at	A	A1MS	POPTR_0002s05030	POPTR_0002s05030 (11)	scaffold_2:3242167-3242651(+) (11)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.1	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.218349.1.S1_x_at	A	A1MS	POPTR_0002s05030	POPTR_0002s05030 (9)	scaffold_2:3242167-3242651(+) (9)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.1	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.218352.1.S1_at	A	A1TS	POPTR_0492s00210	POPTR_0492s00210 (10)	scaffold_492:5902-6425(-) (10)	NA	NA	NA	AT5G53450.2	OBP3-responsive gene 1 	LOC_Os01g46720.1	expressed protein	Medtr3g124180.1	"Proteinase inhibitor I4, serpin; Protein kinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218354.1.S1_x_at	A	A2TS	POPTR_0001s47815	POPTR_0001s47815 (11)//POPTR_0001s42440 (9)	scaffold_1:42417188-42417706(+) (9)//scaffold_1:48160425-48160931(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218355.1.S1_at	A	A1MS	POPTR_0030s00300	POPTR_0030s00300 (10)	scaffold_30:86036-86211(-) (10)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218355.1.S1_s_at	A	A1TS	POPTR_0030s00300	POPTR_0030s00300 (11)	scaffold_30:86243-86729(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218363.1.S1_at	A	A1TS	POPTR_0012s11840	POPTR_0012s11840 (11)	scaffold_12:12209644-12210470(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os10g22890.1	"receptor-like kinase, putative, expressed"	Medtr5g026130.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.218364.1.S1_at	A	A1TS	POPTR_0012s11860	POPTR_0012s11860 (11)	scaffold_12:12221298-12221790(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G45120.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g43550.1	Eukaryotic aspartyl protease domain containing protein	Medtr8g105840.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218365.1.S1_s_at	A	A1TS	POPTR_0012s11890	POPTR_0012s11890 (11)	scaffold_12:12249643-12249905(+) (11)	NA	NA	NA	AT4G19650.1	Mitochondrial transcription termination factor family protein 	LOC_Os08g40630.2	"mTERF domain containing protein, expressed"	Medtr5g092160.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218367.1.S1_at	A	A1TS	POPTR_0012s11910	POPTR_0012s11910 (11)	scaffold_12:12268241-12269041(+) (11)	NA	NA	NA	AT3G06880.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g07190.1	expressed protein	Medtr2g034510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218368.1.S1_at	A	A1TS	POPTR_0012s11920	POPTR_0012s11920 (11)	scaffold_12:12272399-12272723(-) (11)	NA	Q7XTS4	Protein argonaute 2	AT1G31280.1	Argonaute family protein 	LOC_Os04g52540.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g034460.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218369.1.S1_at	A	A1MS	POPTR_0012s11930	POPTR_0012s11930 (11)	scaffold_12:12288945-12289412(+) (11)	NA	NA	NA	AT3G05320.1	O-fucosyltransferase family protein 	LOC_Os02g07200.3	"protein-O-fucosyltransferase 1, putative, expressed"	Medtr4g114850.1	"protein-O-fucosyltransferase 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218370.1.S1_at	A	A1TS	POPTR_0012s11940	POPTR_0012s11940 (11)	scaffold_12:12290084-12290747(-) (11)	NA	NA	NA	AT3G54230.1	suppressor of abi3-5 	LOC_Os02g07070.2	"RNA recognition motif family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.218371.1.S1_at	A	A1TS	POPTR_0012s11960	POPTR_0012s11960 (11)	scaffold_12:12298991-12299418(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218373.1.S1_s_at	A	A1TS	POPTR_0012s11990	POPTR_0012s11990 (11)	scaffold_12:12336640-12337126(+) (11)	NA	NA	NA	AT1G31240.1	Bromodomain transcription factor 	LOC_Os02g47160.1	"OsWAK17 - OsWAK short gene, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218374.1.S1_at	A	A1TS	POPTR_0012s12010	POPTR_0012s12010 (11)	scaffold_12:12348178-12349019(+) (11)	NA	Q9LW07	Probable polygalacturonase At3g15720	AT5G17200.1	Pectin lyase-like superfamily protein 	LOC_Os01g07790.1	"polygalacturonase, putative"	Medtr3g104790.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.218375.1.S1_x_at	A	A1TS	POPTR_0012s12130	POPTR_0012s12130 (9)	scaffold_12:12400806-12401003(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218377.1.S1_at	A	A1TS	POPTR_0012s12170	POPTR_0012s12170 (11)	scaffold_12:12435065-12435212(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218377.1.S1_s_at	A	A1TS	POPTR_0012s12170	POPTR_0012s12170 (11)	scaffold_12:12435203-12435464(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218378.1.S1_at	A	A1TS	POPTR_0012s12180	POPTR_0012s12180 (9)	scaffold_12:12436698-12437149(-) (11)	NA	O48651	Squalene monooxygenase	AT4G37760.1	squalene epoxidase 3 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.218388.1.S1_s_at	A	A2TA	POPTR_0019s13660	POPTR_0063s00220 (11)//POPTR_0019s13660 (11)	scaffold_19:14527955-14528097(+) (11)//scaffold_19:14528150-14528268(+) (10)//scaffold_63:29283-29467(+) (11)//scaffold_63:29457-29638(+) (11)//scaffold_63:29628-29809(+) (11)//scaffold_63:29799-29980(+) (11)//scaffold_63:29970-30151(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218389.1.S1_s_at	A	A4TS	POPTR_0004s10920	POPTR_0004s19020 (11)//POPTR_0004s10920 (11)//POPTR_0004s18920 (11)//POPTR_0004s18940 (11)	scaffold_4:9495468-9495674(+) (11)//scaffold_4:18682622-18682828(+) (11)//scaffold_4:18721211-18721417(+) (11)//scaffold_4:18881560-18881766(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g28300.1	"transferase family protein, putative"	Medtr7g073580.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218396.1.S1_s_at	A	A3TS	POPTR_0011s10430	POPTR_0011s10430 (11)//POPTR_0141s00210 (11)//POPTR_0011s10420 (10)	scaffold_11:12865482-12865599(+) (10)//scaffold_11:12879101-12879220(+) (11)//scaffold_141:44213-44332(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05870.1	"receptor kinase, putative, expressed"	Medtr5g019030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218397.1.S1_s_at	A	A2TS	POPTR_0001s07620	POPTR_0001s07620 (11)//POPTR_1809s00200 (11)	scaffold_1:5764269-5764644(-) (11)//scaffold_1809:1674-2049(+) (11)	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT1G16130.1	wall associated kinase-like 2 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.218398.1.S1_x_at	A	A1TS	POPTR_0123s00230	POPTR_0123s00230 (11)	scaffold_123:23177-23473(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.218399.1.S1_s_at	A	A1TS	POPTR_0019s02170	POPTR_0019s02170 (11)	scaffold_19:2017349-2017697(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218400.1.S1_at	A	A2TS	POPTR_0019s02210	POPTR_0019s02210 (11)//POPTR_0190s00210 (10)	scaffold_19:2066920-2067480(+) (11)//scaffold_190:21112-21670(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G23530.1	carboxyesterase 18 	LOC_Os07g44890.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr6g071230.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.218401.1.S1_at	A	A1TS	POPTR_0019s02280	POPTR_0019s02280 (11)	scaffold_19:2112331-2113953(-) (11)	NA	P54697	Myosin-J heavy chain	AT1G54560.1	Myosin family protein with Dil domain 	LOC_Os06g29350.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.218403.1.S1_s_at	A	A5TS	POPTR_0019s02340	POPTR_0019s02370 (11)//POPTR_0019s02350 (11)//POPTR_1174s00200 (11)//POPTR_0019s02420 (11)//POPTR_0019s02340 (11)	scaffold_1174:859-3891(+) (11)//scaffold_1174:3786-4075(+) (9)//scaffold_19:2185861-2186150(-) (11)//scaffold_19:2187464-2187753(-) (11)//scaffold_19:2201543-2201835(-) (11)//scaffold_19:2207400-2217693(-) (11)	POPTR_0019s02330 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218406.1.S1_at	A	A1TS	POPTR_0019s02440	POPTR_0019s02440 (10)	scaffold_19:2231013-2231519(-) (11)	NA	NA	NA	AT1G08800.2	"Protein of unknown function, DUF593 "	LOC_Os01g56790.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218407.1.S1_s_at	A	A1TS	POPTR_0019s02460	POPTR_0019s02460 (9)	scaffold_19:2251848-2252177(+) (11)	NA	Q9C7U5	"Glucan endo-1,3-beta-glucosidase 2"	AT4G05430.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os01g53750.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g137950.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218408.1.S1_s_at	A	A2TS	POPTR_0019s02480	POPTR_0319s00210 (10)//POPTR_0019s02480 (10)	scaffold_19:2265799-2266365(-) (10)//scaffold_319:5814-6380(-) (10)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os08g13870.1	"S-locus lectin protein kinase family protein, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218409.1.S1_at	A	A2MS	POPTR_0019s02490	POPTR_0019s02490 (10)//POPTR_0019s02520 (10)	scaffold_19:2272652-2272860(-) (10)//scaffold_19:2287316-2287524(-) (10)	NA	Q5ZJH6	Serine/threonine-protein kinase ULK3	AT1G49180.2	protein kinase family protein 	LOC_Os04g58990.1	"CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g144060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218409.1.S1_s_at	A	A2TS	POPTR_0019s02490	POPTR_0019s02490 (11)//POPTR_0019s02520 (11)	scaffold_19:2272667-2272881(-) (11)//scaffold_19:2287331-2287545(-) (11)	NA	Q5ZJH6	Serine/threonine-protein kinase ULK3	AT1G49180.2	protein kinase family protein 	LOC_Os04g58990.1	"CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g144060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218413.1.S1_at	A	A1TS	POPTR_0019s02550	POPTR_0019s02550 (11)	scaffold_19:2322979-2324003(+) (11)	NA	NA	NA	AT5G56530.2	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr5g086290.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218414.1.S1_at	A	A1TS	POPTR_0019s02560	POPTR_0019s02560 (11)	scaffold_19:2328427-2328777(-) (11)	NA	P29421	Alpha-amylase/subtilisin inhibitor	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.218415.1.S1_at	A	A1TS	POPTR_0019s02570	POPTR_0019s02570 (11)	scaffold_19:2331012-2331483(+) (11)	NA	P13087	Miraculin	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.218417.1.S1_x_at	A	A1TS	POPTR_0013s12530	POPTR_0013s12530 (9)	scaffold_13:13188650-13188974(-) (10)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os02g27070.2	"PPR repeat domain containing protein, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218421.1.S1_x_at	A	A1TS	POPTR_0001s42390	POPTR_0001s42390 (11)	scaffold_1:42258703-42258777(+) (11)	POPTR_0049s00230 (6)//POPTR_0001s45070 (6)//POPTR_0001s47800 (6)	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218422.1.S1_at	A	A1TS	POPTR_0016s12830	POPTR_0016s12830 (11)	scaffold_16:12195290-12195743(-) (11)	NA	Q9M041	Transcription factor bHLH140	AT5G01310.1	APRATAXIN-like 	LOC_Os01g61480.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g075730.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.218436.1.S1_at	A	A1MS	POPTR_0005s01630	POPTR_0005s01630 (9)	scaffold_5:1084004-1085059(+) (9)	NA	Q9C9H7	Receptor-like protein 12	AT1G58190.1	receptor like protein 9 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.218436.1.S1_x_at	A	A1MS	POPTR_0005s01630	POPTR_0005s01630 (10)	scaffold_5:1084004-1085106(+) (10)	NA	Q9C9H7	Receptor-like protein 12	AT1G58190.1	receptor like protein 9 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.218437.1.S1_at	A	A1TS	POPTR_0001s43140	POPTR_0001s43140 (11)	scaffold_1:43191936-43193443(-) (11)	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT4G20400.1	JUMONJI 14 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	AC225479_20.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; FY-rich, C-terminal; Zinc finger, C5HC2-type AC225479.3 88241-93710 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.218438.1.S1_at	A	A1TS	POPTR_0001s43130	POPTR_0001s43130 (11)	scaffold_1:43188838-43189404(+) (11)	NA	NA	NA	AT1G30800.1	Fasciclin-like arabinogalactan family protein 	NA	NA	AC225479_21.1	Beta-Ig-H3/fasciclin AC225479.3 95792-95115 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218439.1.S1_at	A	A1MS	POPTR_0001s43100	POPTR_0001s43100 (9)	scaffold_1:43175376-43175812(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218440.1.S1_at	A	A1TS	POPTR_0001s43070	POPTR_0001s43070 (11)	scaffold_1:43152045-43152609(-) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g137740.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.218441.1.S1_at	A	A1TS	POPTR_0001s43050	POPTR_0001s43050 (10)	scaffold_1:43119581-43120314(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218442.1.S1_at	A	A1TS	POPTR_0001s43040	POPTR_0001s43040 (11)	scaffold_1:43110626-43110881(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218442.1.S1_x_at	A	A1TS	POPTR_0001s43040	POPTR_0001s43040 (11)	scaffold_1:43110629-43110952(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218445.1.S1_at	A	A1TS	POPTR_0001s43010	POPTR_0001s43010 (11)	scaffold_1:43057900-43058428(+) (11)	NA	NA	NA	AT1G79120.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os03g46460.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr3g138900.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218446.1.S1_at	A	A1TS	POPTR_0001s42960	POPTR_0001s42960 (11)	scaffold_1:43039684-43039814(+) (11)	NA	NA	NA	AT1G56000.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g57070.2	"amine oxidase-related, putative, expressed"	Medtr2g077110.1	Amine oxidase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.218446.1.S1_s_at	A	A1TS	POPTR_0001s42960	POPTR_0001s42960 (11)	scaffold_1:43038940-43041677(+) (11)	NA	NA	NA	AT1G56000.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g57070.2	"amine oxidase-related, putative, expressed"	Medtr2g077110.1	Amine oxidase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.218447.1.S1_at	A	A1TS	POPTR_0001s42950	POPTR_0001s42950 (11)	scaffold_1:43031259-43031987(-) (11)	NA	C0LGH2	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	AT1G16670.1	Protein kinase superfamily protein 	LOC_Os02g06930.2	"protein kinase, putative, expressed"	Medtr2g077070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218448.1.S1_at	A	A1TS	POPTR_0001s42930	POPTR_0001s42930 (11)	scaffold_1:43008088-43008898(-) (11)	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30200.1	"ATP binding protein, putative, expressed"	Medtr5g101150.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218450.1.S1_at	A	A1TS	POPTR_0022s00630	POPTR_0022s00630 (11)	scaffold_22:292115-292655(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218450.1.S1_s_at	A	A1TS	POPTR_0022s00630	POPTR_0022s00630 (11)	scaffold_22:291935-292549(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218451.1.S1_s_at	A	A1MS	POPTR_0013s03520	POPTR_0013s03520 (11)	scaffold_13:2196702-2197049(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g02990.1	"leucine-rich repeat receptor-like protein kinase 1, putative"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218452.1.S1_at	A	A1MS	POPTR_0013s03520	POPTR_0013s03520 (11)	scaffold_13:2196448-2196695(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g02990.1	"leucine-rich repeat receptor-like protein kinase 1, putative"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218452.1.S1_s_at	A	A1TS	POPTR_0013s03520	POPTR_0013s03520 (11)	scaffold_13:2196501-2196673(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g02990.1	"leucine-rich repeat receptor-like protein kinase 1, putative"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218454.1.S1_s_at	A	A1TS	POPTR_0021s00520	POPTR_0021s00520 (11)	scaffold_21:228551-228586(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.218457.1.S1_s_at	A	A4TS	POPTR_0008s02330	POPTR_1332s00200 (11)//POPTR_0008s02340 (11)//POPTR_0008s02330 (11)//POPTR_0008s02345 (9)	scaffold_1332:4032-4245(+) (11)//scaffold_8:1113392-1113605(-) (11)//scaffold_8:1121777-1121811(-) (9)//scaffold_8:1117482-1117695(+) (11)//scaffold_8:1150077-1150111(-) (9)	NA	Q02200	Lignin-forming anionic peroxidase	AT1G14550.1	Peroxidase superfamily protein 	LOC_Os03g32050.1	"peroxidase precursor, putative, expressed"	Medtr4g114950.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.218458.1.S1_at	A	A1MS	POPTR_0005s17810	POPTR_0005s17810 (11)	scaffold_5:15562549-15562708(+) (11)	NA	NA	NA	AT3G04460.1	peroxin-12 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218466.1.S1_at	A	A2TS	POPTR_0012s06230	POPTR_0012s06230 (10)//POPTR_0012s06260 (10)	scaffold_12:6324965-6326304(+) (11)//scaffold_12:6471969-6473959(-) (10)	NA	O13983	Putative ATP-dependent helicase hrq1	AT5G08110.1	nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases 	LOC_Os07g41564.1	"DEAD/DEAH box helicase domain protein, putative"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.218467.1.S1_s_at	A	A1TS	POPTR_0012s06240	POPTR_0012s06240 (11)	scaffold_12:6348524-6348737(-) (11)//scaffold_6:19631390-19631603(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218468.1.S1_at	A	A1MS	POPTR_0012s06200	POPTR_0012s06200 (10)	scaffold_12:6227774-6228382(-) (10)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218476.1.S1_at	A	A1TS	POPTR_0009s11200	POPTR_0009s11200 (9)	scaffold_9:9379102-9387141(+) (11)//scaffold_9:9386805-9387058(+) (9)	POPTR_0009s11180 (7)	O81972	Cytochrome P450 82A2	AT4G31970.1	"cytochrome P450, family 82, subfamily C, polypeptide 2 "	LOC_Os09g26970.1	"retrotransposon protein, putative, unclassified"	Medtr6g036420.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218477.1.S1_at	A	A2MS	POPTR_0039s00290	POPTR_0726s00210 (11)//POPTR_0039s00290 (11)	scaffold_39:84929-85200(-) (11)//scaffold_726:5710-5981(+) (11)	NA	P19954	"30S ribosomal protein 1, chloroplastic"	AT5G24490.1	"30S ribosomal protein, putative "	LOC_Os03g63950.2	"plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed"	Medtr3g122720.1	Sigma 54 modulation protein/ribosomal protein S30EA 	GO:0044238|primary metabolic process	GO:0005488|binding	NA
PtpAffx.218477.1.S1_x_at	A	A2MS	POPTR_0039s00290	POPTR_0726s00210 (11)//POPTR_0039s00290 (11)	scaffold_39:84929-85200(-) (11)//scaffold_726:5710-5981(+) (11)	POPTR_0046s00300 (6)	P19954	"30S ribosomal protein 1, chloroplastic"	AT5G24490.1	"30S ribosomal protein, putative "	LOC_Os03g63950.2	"plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed"	Medtr3g122720.1	Sigma 54 modulation protein/ribosomal protein S30EA 	GO:0044238|primary metabolic process	GO:0005488|binding	NA
PtpAffx.218481.1.S1_at	A	A1MS	POPTR_0011s15130	POPTR_0011s15130 (11)	scaffold_11:17288781-17293304(+) (11)	NA	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.218483.1.S1_at	A	A2TS	POPTR_1263s00210	POPTR_1263s00210 (11)//POPTR_0005s14770 (9)	scaffold_1263:4299-4469(-) (11)//scaffold_5:11721266-11721436(+) (11)	NA	Q9LS10	Probable S-adenosylmethionine-dependent methyltransferase At5g38100	AT3G44840.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g57050.1	"jasmonate O-methyltransferase, putative"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.218484.1.S1_s_at	A	A1TS	POPTR_0005s14760	POPTR_0005s14760 (11)	scaffold_5:11718410-11720109(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G18950.1	Integrin-linked protein kinase family 	LOC_Os01g54480.1	"serine/threonine protein kinase, putative, expressed"	Medtr5g099160.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218490.1.S1_at	A	A1TS	POPTR_0001s34490	POPTR_0001s34490 (11)	scaffold_1:32606387-32606834(-) (11)	NA	NA	NA	AT1G29790.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g42770.1	"a_IG002N01.7, putative"	Medtr5g085490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218491.1.S1_at	A	A1TS	POPTR_0001s34400	POPTR_0001s34400 (11)	scaffold_1:32551813-32552038(+) (11)	NA	NA	NA	AT1G76750.1	Protein of unknown function (DUF1278) 	LOC_Os11g06730.1	"ECAGL2 - ECA1 gametogenesis related family protein precursor, expressed"	Medtr3g064370.1	Protein of unknown function DUF1278 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218492.1.S1_at	A	A1TS	POPTR_0001s34390	POPTR_0001s34390 (11)	scaffold_1:32545372-32545459(+) (11)	NA	NA	NA	AT5G46410.2	SCP1-like small phosphatase 4 	NA	NA	Medtr2g056340.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218492.1.S1_s_at	A	A1TS	POPTR_0001s34390	POPTR_0001s34390 (11)	scaffold_1:32544351-32545420(+) (11)	NA	NA	NA	AT5G46410.2	SCP1-like small phosphatase 4 	NA	NA	Medtr2g056340.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218493.1.S1_at	A	A1TS	POPTR_0001s34290	POPTR_0001s34290 (10)	scaffold_1:32464565-32464693(-) (11)	NA	NA	NA	AT4G18060.1	SH3 domain-containing protein 	LOC_Os07g32460.1	"src homology-3 domain protein 3, putative, expressed"	Medtr4g136530.1	SH3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218493.1.S1_x_at	A	A1TS	POPTR_0001s34290	POPTR_0001s34290 (9)	scaffold_1:32464553-32466688(-) (11)	NA	NA	NA	AT4G18060.1	SH3 domain-containing protein 	LOC_Os07g32460.1	"src homology-3 domain protein 3, putative, expressed"	Medtr4g136530.1	SH3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218495.1.S1_at	A	A1TS	POPTR_0001s34350	POPTR_0001s34350 (9)	scaffold_1:32504705-32505356(+) (11)	NA	Q94KD8	Probable beta-D-xylosidase 2	AT1G02640.1	beta-xylosidase 2 	LOC_Os01g19220.1	"beta-D-xylosidase, putative, expressed"	Medtr1g106980.1	"Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.218497.1.S1_s_at	A	A1TS	POPTR_0001s34330	POPTR_0001s34330 (11)	scaffold_1:32486753-32486955(+) (11)	NA	Q9FHF9	"Pentatricopeptide repeat-containing protein At5g46460, mitochondrial"	AT5G46460.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g05720.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	Medtr4g136780.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218498.1.S1_at	A	A1TS	POPTR_0001s34340	POPTR_0001s34340 (9)	scaffold_1:32490673-32491650(+) (10)	NA	Q9LJN4	Probable beta-D-xylosidase 5	AT3G19620.1	Glycosyl hydrolase family protein 	LOC_Os01g19220.1	"beta-D-xylosidase, putative, expressed"	Medtr2g008400.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.218500.1.S1_at	A	A1TS	POPTR_0001s34280	POPTR_0001s34280 (11)	scaffold_1:32456709-32457245(+) (11)	NA	Q9M0M2	ABC transporter B family member 9	AT4G18050.1	P-glycoprotein  9 	LOC_Os01g50160.1	"MDR-like ABC transporter, putative, expressed"	Medtr2g021930.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.218505.1.S1_x_at	A	A1TS	POPTR_0007s00760	POPTR_0007s00760 (11)	scaffold_7:373859-381989(-) (11)	POPTR_0007s00740 (7)	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g137110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218513.1.S1_s_at	A	A2TS	POPTR_0001s22070	POPTR_0001s22070 (11)//POPTR_0001s22060 (9)	scaffold_1:20658630-20658803(+) (9)//scaffold_1:20689010-20689201(+) (11)	NA	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.2	Serine carboxypeptidase S28 family protein 	LOC_Os11g05760.1	"OsProCP5 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.218515.1.S1_s_at	A	A1TS	POPTR_0001s23010	POPTR_0001s23010 (11)	scaffold_1:22053580-22053680(-) (11)	NA	NA	NA	AT4G15010.2	Mitochondrial substrate carrier family protein 	LOC_Os04g44540.2	"mitochondrial carrier protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218518.1.S1_at	A	A1MS	POPTR_0008s11840	POPTR_0008s11840 (11)	scaffold_8:7584709-7584822(-) (11)	NA	Q84L30	Putative DNA repair protein RAD23-4	AT5G38470.1	Rad23 UV excision repair protein family 	LOC_Os09g24200.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.218527.1.S1_at	A	A1TS	POPTR_0007s10430	POPTR_0007s10430 (11)	scaffold_7:10377893-10378428(-) (11)	NA	Q9MB73	Limonoid UDP-glucosyltransferase	AT2G23260.1	UDP-glucosyl transferase 84B1 	LOC_Os02g09510.1	"limonoid UDP-glucosyltransferase, putative, expressed"	Medtr5g016420.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218528.1.S1_at	A	A1TS	POPTR_0007s10410	POPTR_0007s10410 (11)	scaffold_7:10349489-10350047(+) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.21853.1.S1_a_at	A	A1TS	POPTR_0006s11770	POPTR_0006s11770 (11)	scaffold_6:8958898-8959092(+) (11)	NA	Q6V9I6	Histone deacetylase HDT1	AT5G03740.1	histone deacetylase 2C 	LOC_Os05g51830.1	"ZOS5-12 - C2H2 zinc finger protein, expressed"	Medtr4g073420.1	"Histone deacetylase HDT1, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.218530.1.S1_at	A	A1TS	POPTR_0007s10400	POPTR_0007s10400 (10)	scaffold_7:10320017-10320559(+) (11)	NA	Q9FG65	Cytochrome P450 81D1	AT4G37360.1	"cytochrome P450, family 81, subfamily D, polypeptide 2 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016390.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218531.1.S1_at	A	A1TS	POPTR_0007s10380	POPTR_0007s10380 (11)	scaffold_7:10301050-10301342(-) (11)	NA	Q8BHJ5	F-box-like/WD repeat-containing protein TBL1XR1	AT5G67320.1	WD-40 repeat family protein 	LOC_Os07g22220.1	"F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218532.1.S1_s_at	A	A1TS	POPTR_0007s10350	POPTR_0007s10350 (11)	scaffold_7:10233079-10233586(-) (11)	NA	O82333	Probable indole-3-acetic acid-amido synthetase GH3.1	AT2G14960.1	Auxin-responsive GH3 family protein 	LOC_Os07g40290.1	"OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218534.1.S1_at	A	A1TS	POPTR_0007s10340	POPTR_0007s10340 (10)	scaffold_7:10197535-10198993(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218535.1.S1_at	A	A1TS	POPTR_0007s10320	POPTR_0007s10320 (11)	scaffold_7:10147541-10148851(-) (11)	NA	Q9SNV9	Metal transporter Nramp3	AT2G23150.1	natural resistance-associated macrophage protein 3 	LOC_Os12g39180.1	"natural resistance-associated macrophage protein, putative, expressed"	Medtr5g016260.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.218536.1.S1_at	A	A1TS	POPTR_0007s10310	POPTR_0007s10310 (11)	scaffold_7:10135616-10135702(-) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os07g40270.1	"frigida, putative, expressed"	Medtr8g099150.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218536.1.S1_s_at	A	A1TS	POPTR_0007s10310	POPTR_0007s10310 (11)	scaffold_7:10135771-10136214(-) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os07g40270.1	"frigida, putative, expressed"	Medtr8g099150.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218537.1.S1_at	A	A1MS	POPTR_0007s10300	POPTR_0007s10300 (10)	scaffold_7:10131818-10132032(-) (10)	NA	NA	NA	NA	NA	LOC_Os07g09300.1	"retrotransposon protein, putative, unclassified"	Medtr8g074770.1	"Protein of unknown function DUF889, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218538.1.S1_at	A	A1TS	POPTR_0007s10250	POPTR_0007s10250 (11)	scaffold_7:10096506-10096677(+) (11)	NA	Q948Z4	Snakin-1	AT2G14900.1	Gibberellin-regulated family protein 	LOC_Os03g55290.1	"GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	AC232874_8.1	Gibberellin regulated protein AC232874.1 30298-31672 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218539.1.S1_at	A	A1TS	POPTR_0007s10240	POPTR_0007s10240 (11)	scaffold_7:10091220-10092909(+) (11)	NA	NA	NA	AT4G34280.1	transducin family protein / WD-40 repeat family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218548.1.S1_s_at	A	A6TS	POPTR_0006s28400	POPTR_0006s28470 (11)//POPTR_0157s00210 (11)//POPTR_0006s28400 (11)//POPTR_0006s28440 (10)//POPTR_0006s28420 (9)//POPTR_0006s28490 (9)	scaffold_157:10760-11249(-) (11)//scaffold_6:26091160-26091651(+) (11)//scaffold_6:26105534-26106025(+) (9)//scaffold_6:26123135-26123555(+) (10)//scaffold_6:26141789-26142279(+) (11)//scaffold_6:26165889-26166284(+) (9)	POPTR_0006s28520 (7)	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g26000.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.218549.1.S1_at	A	A2TS	POPTR_0012s10850	POPTR_0012s11130 (11)//POPTR_0012s10850 (11)	scaffold_12:11546863-11547455(+) (11)//scaffold_12:11705638-11706230(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218550.1.S1_s_at	A	A1TS	POPTR_0003s12510	POPTR_0003s12510 (11)	scaffold_3:13065157-13065286(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g36200.1	"heavy metal-associated domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218551.1.S1_at	A	A1TS	POPTR_0006s27660	POPTR_0006s27660 (11)	scaffold_6:25510474-25510553(-) (11)	NA	NA	NA	AT5G17980.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218551.1.S1_x_at	A	A1MS	POPTR_0006s27660	POPTR_0006s27660 (11)	scaffold_6:25510408-25510593(-) (11)	NA	NA	NA	AT5G17980.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218560.1.S1_s_at	A	A1TS	POPTR_0005s13290	POPTR_0005s13290 (11)	scaffold_5:10302049-10302288(+) (11)	NA	Q3E6Q1	Pentatricopeptide repeat-containing protein At1g11290	AT1G11290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g29230.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	Medtr5g076070.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218561.1.S1_at	A	A1TS	POPTR_0005s13310	POPTR_0005s13310 (10)	scaffold_5:10380858-10382531(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218576.1.S1_s_at	A	A1TS	POPTR_0010s17310	POPTR_0010s17310 (11)	scaffold_10:15956117-15956315(+) (11)	NA	Q6R8G7	Phosphate transporter PHO1 homolog 3	AT1G14040.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218577.1.S1_at	A	A1TS	POPTR_0012s05220	POPTR_0012s05220 (11)	scaffold_12:4807430-4807470(+) (11)	NA	NA	NA	AT1G48840.1	Plant protein of unknown function (DUF639) 	LOC_Os10g03830.1	expressed protein	Medtr6g028160.2	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218577.1.S1_s_at	A	A2TS	POPTR_0012s05220	POPTR_0012s05220 (11)//POPTR_0015s03740 (11)	scaffold_12:4807352-4807405(+) (11)//scaffold_15:3568200-3568253(-) (11)	NA	NA	NA	AT1G48840.1	Plant protein of unknown function (DUF639) 	LOC_Os10g03830.1	expressed protein	Medtr6g028160.2	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218582.1.S1_x_at	A	A2TS	POPTR_0005s03020	POPTR_0005s03020 (11)//POPTR_0005s03120 (10)	scaffold_5:1981642-1982067(-) (11)//scaffold_5:2056932-2057354(-) (10)	POPTR_0005s03150 (8)	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218583.1.S1_s_at	A	A1TS	POPTR_0008s21815	POPTR_0008s21815 (11)	scaffold_10:4487993-4488094(-) (11)//scaffold_10:4775498-4775599(+) (11)//scaffold_10:5427711-5427812(-) (11)//scaffold_11:3260671-3260772(+) (11)//scaffold_11:10498928-10499029(+) (10)//scaffold_11:10551982-10552083(+) (11)//scaffold_119:11321-11422(+) (11)//scaffold_12:6351912-6352013(+) (11)//scaffold_12:6544648-6544749(+) (11)//scaffold_12:12854464-12854565(-) (11)//scaffold_15:1687162-1687263(+) (10)//scaffold_15:1713753-1713854(+) (11)//scaffold_16:10311718-10311819(-) (11)//scaffold_17:6312490-6312553(-) (10)//scaffold_17:9299030-9299131(-) (11)//scaffold_18:8183724-8183787(-) (10)//scaffold_19:8223702-8223803(-) (11)//scaffold_23:608433-608534(-) (11)//scaffold_24:577120-577221(-) (11)//scaffold_405:41478-41541(+) (9)//scaffold_5:9892288-9892389(+) (11)//scaffold_5:10123754-10123817(-) (10)//scaffold_5:10342304-10342405(-) (11)//scaffold_52:68967-69068(-) (11)//scaffold_52:88243-88344(-) (11)//scaffold_52:114475-114576(+) (10)//scaffold_54:9489-9590(+) (11)//scaffold_55:13532-13633(+) (10)//scaffold_72:84775-84876(+) (11)//scaffold_8:15662840-15662941(-) (11)//scaffold_8:15668796-15668897(+) (11)//scaffold_8:16077115-16077216(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218584.1.S1_at	A	A1TS	POPTR_0018s07780	POPTR_0018s07780 (11)	scaffold_18:8532954-8533532(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218590.1.S1_at	A	A1TS	POPTR_0018s00320	POPTR_0018s00320 (9)	scaffold_18:239230-239504(+) (9)	NA	Q94IR2	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	NA	NA	LOC_Os09g15240.1	"carotenoid cleavage dioxygenase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218594.1.S1_s_at	A	A1TS	POPTR_0001s08240	POPTR_0001s08240 (11)	scaffold_1:6289094-6289156(-) (11)	NA	NA	NA	AT4G22840.1	Sodium Bile acid symporter family 	LOC_Os09g34900.1	"bile acid sodium symporter family protein, putative, expressed"	Medtr5g011580.1	Bile acid:sodium symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218602.1.S1_x_at	A	A2TS	POPTR_0001s07630	POPTR_0001s07630 (11)//POPTR_0001s07650 (9)	scaffold_1:5768529-5768814(-) (11)//scaffold_1:5791577-5791862(-) (9)	POPTR_0001s03240 (7)	Q7X8C5	Wall-associated receptor kinase-like 2	AT1G16130.1	wall associated kinase-like 2 	LOC_Os04g51050.1	"OsWAK53b - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218604.1.S1_at	A	A1TS	POPTR_0001s03380	POPTR_0001s03380 (11)	scaffold_1:2757951-2758575(+) (11)	NA	NA	NA	AT3G50310.1	mitogen-activated protein kinase kinase kinase 20 	LOC_Os02g44642.1	"STE_MEKK_ste11_MAP3K.10 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017110.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218605.1.S1_at	A	A1TS	POPTR_0001s03400	POPTR_0001s03400 (11)	scaffold_1:2768645-2769147(+) (11)	NA	Q9ZUI0	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os09g25540.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr8g144900.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218606.1.S1_at	A	A1TS	POPTR_0001s03450	POPTR_0001s03450 (11)	scaffold_1:2792183-2792347(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218607.1.S1_at	A	A1TS	POPTR_0001s03460	POPTR_0001s03460 (11)	scaffold_1:2799764-2801476(+) (11)	NA	Q9SZ53	Probable protein phosphatase 2C 60	AT4G31860.1	Protein phosphatase 2C family protein 	LOC_Os06g44210.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218608.1.S1_at	A	A1TS	POPTR_0001s03480	POPTR_0001s03480 (11)	scaffold_1:2810871-2811939(+) (11)	NA	Q9SAH0	Magnesium transporter MRS2-10	AT1G80900.1	magnesium transporter 1 	LOC_Os06g44150.1	"CorA-like magnesium transporter protein, putative, expressed"	AC233655_15.1	"Mg2+ transporter protein, CorA-like AC233655.2 106201-110644 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218609.1.S1_at	A	A1TS	POPTR_0001s03490	POPTR_0001s03490 (11)	scaffold_1:2816392-2816474(-) (11)	NA	NA	NA	AT1G16000.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g36930.1	expressed protein	Medtr4g021670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218610.1.S1_at	A	A1TS	POPTR_0001s03510	POPTR_0001s03510 (11)	scaffold_1:2822746-2823144(+) (11)	NA	Q9SAH2	"Pentatricopeptide repeat-containing protein At1g80880, mitochondrial"	AT1G80880.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g17080.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g099950.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218611.1.S1_at	A	A1TS	POPTR_0001s03540	POPTR_0001s03540 (11)	scaffold_1:2838336-2838860(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os02g17400.1	"leucine rich repeat protein, putative"	Medtr4g137570.1	"HcrVf3 protein, related "	NA	GO:0005515|protein binding	NA
PtpAffx.218612.1.S1_at	A	A1TS	POPTR_0001s03570	POPTR_0001s03570 (11)	scaffold_1:2858198-2858783(-) (11)	NA	NA	NA	AT4G37580.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g55530.1	"HLS, putative, expressed"	Medtr4g022010.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.218614.1.S1_at	A	A1TS	POPTR_0001s03610	POPTR_0001s03610 (11)	scaffold_1:2874239-2875220(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218616.1.S1_s_at	A	A1TS	POPTR_0001s03650	POPTR_0001s03650 (11)	scaffold_1:2914133-2915830(+) (11)	NA	Q9S9N8	Metal transporter Nramp6	AT1G15960.1	NRAMP metal ion transporter 6 	LOC_Os06g46310.2	"metal transporter Nramp6, putative, expressed"	Medtr3g100650.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.218618.1.S1_at	A	A1TS	POPTR_0001s14990	POPTR_0001s14990 (11)	scaffold_1:11823292-11823467(+) (11)	NA	P51104	Dihydroflavonol-4-reductase	AT1G15950.1	cinnamoyl coa reductase 1 	LOC_Os09g25150.2	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218629.1.S1_at	A	A1TS	POPTR_0002s22530	POPTR_0002s22530 (11)	scaffold_2:19284432-19284932(-) (11)	NA	Q8L735	"Isoamylase 2, chloroplastic"	AT1G03310.1	debranching enzyme 1 	LOC_Os05g32710.1	"Alpha amylase, catalytic domain containing protein, expressed"	Medtr4g160980.1	"Alpha amylase, catalytic region; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.218637.1.S1_s_at	A	A1TS	POPTR_0015s08695	POPTR_0015s08695 (11)	scaffold_15:10012959-10013518(+) (11)	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g29960.1	"retrotransposon protein, putative, unclassified"	Medtr8g044140.1	"Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218640.1.S1_at	A	A1TS	POPTR_0013s03420	POPTR_0013s03420 (11)	scaffold_13:2112350-2113518(-) (11)	NA	NA	NA	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	NA	NA	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218641.1.S1_s_at	A	A1MS	POPTR_0013s03410	POPTR_0013s03410 (11)	scaffold_13:2107402-2108711(-) (11)	POPTR_0013s03580 (6)	NA	NA	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os12g41230.3	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218651.1.S1_at	A	A1MS	POPTR_0016s03080	POPTR_0016s03080 (9)	scaffold_16:1541865-1542423(-) (9)	NA	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.218652.1.S1_at	A	A4TS	POPTR_0005s13340	POPTR_0005s18760 (11)//POPTR_0005s13340 (11)//POPTR_0005s18380 (9)//POPTR_0005s18750 (9)	scaffold_5:10492713-10492859(-) (11)//scaffold_5:10498696-10498842(-) (11)//scaffold_5:16536207-16536329(+) (9)//scaffold_5:17041743-17047483(+) (11)//scaffold_5:17047479-17047600(+) (9)	POPTR_0005s13320 (8)//POPTR_0005s18710 (8)	O22187	Probable receptor-like protein kinase At2g23200	AT2G23200.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218652.1.S1_x_at	A	A2TS	POPTR_0005s13340	POPTR_0005s18760 (11)//POPTR_0005s13340 (11)	scaffold_5:10492713-10493067(-) (11)//scaffold_5:10498696-10499050(-) (11)//scaffold_5:17041743-17047483(+) (11)	POPTR_0005s18380 (8)//POPTR_0005s18750 (8)//POPTR_0005s13320 (7)//POPTR_0005s18710 (7)	O22187	Probable receptor-like protein kinase At2g23200	AT2G23200.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218655.1.S1_at	A	A1TS	POPTR_0008s22090	POPTR_0008s22090 (11)	scaffold_8:16471695-16472186(-) (11)	NA	NA	NA	AT5G49030.3	"tRNA synthetase class I (I, L, M and V) family protein "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218656.1.S1_s_at	A	A1TS	POPTR_0008s22090	POPTR_0008s22090 (11)	scaffold_8:16471545-16471694(-) (11)	NA	NA	NA	AT5G49030.3	"tRNA synthetase class I (I, L, M and V) family protein "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218657.1.S1_at	A	A1TS	POPTR_0169s00200	POPTR_0169s00200 (11)	scaffold_169:26860-28795(-) (10)//scaffold_8:16482851-16491108(-) (10)	NA	B8HMX3	Isoleucyl-tRNA synthetase	AT5G49030.3	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os02g53770.1	"tRNA synthetase class I, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218658.1.S1_at	A	A1TS	POPTR_0008s22120	POPTR_0008s22120 (11)	scaffold_8:16505249-16507352(-) (11)	NA	Q8YXY3	Isoleucyl-tRNA synthetase	AT5G49030.3	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os02g53770.1	"tRNA synthetase class I, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218659.1.S1_at	A	A1TS	POPTR_0008s22130	POPTR_0008s22130 (11)	scaffold_8:16517650-16518182(-) (11)	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.21866.1.S1_s_at	A	A1TS	POPTR_0003s17160	POPTR_0003s17160 (11)	scaffold_3:16600876-16601351(-) (11)	NA	Q9FYF7	REF/SRPP-like protein At1g67360	AT1G67360.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr3g103750.2	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21866.2.S1_s_at	A	A1TS	POPTR_0003s17160	POPTR_0003s17160 (11)	scaffold_3:16601113-16601645(-) (11)	NA	Q9FYF7	REF/SRPP-like protein At1g67360	AT1G67360.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr3g103750.2	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218660.1.S1_at	A	A1TS	POPTR_0008s22140	POPTR_0008s22140 (11)	scaffold_8:16526873-16527342(-) (11)	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.218662.1.S1_s_at	A	A3TS	POPTR_0008s22180	POPTR_0829s00200 (11)//POPTR_0082s00200 (11)//POPTR_0008s22180 (11)	scaffold_8:16596297-16596338(+) (11)//scaffold_8:16597124-16597165(-) (11)//scaffold_82:36926-36967(+) (11)//scaffold_829:875-916(-) (11)	NA	Q6H4M2	Potassium transporter 19	AT2G35060.2	K+ uptake permease 11 	LOC_Os02g31910.2	"potassium transporter, putative, expressed"	Medtr8g025510.1	Immunoglobulin/major histocompatibility complex; K+ potassium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218663.1.S1_at	A	A1TS	POPTR_0008s22180	POPTR_0008s22180 (10)	scaffold_8:16597044-16597214(-) (10)	NA	Q6H4M2	Potassium transporter 19	AT2G35060.2	K+ uptake permease 11 	LOC_Os02g31910.2	"potassium transporter, putative, expressed"	Medtr8g025510.1	Immunoglobulin/major histocompatibility complex; K+ potassium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218664.1.S1_at	A	A1TS	POPTR_0082s00220	POPTR_0082s00220 (11)	scaffold_82:58051-58189(+) (11)	NA	NA	NA	AT4G15840.1	BTB/POZ domain-containing protein 	LOC_Os01g70670.2	"BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr8g138670.1	BTB/POZ; TatD-related deoxyribonuclease; MATH; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218665.1.S1_at	A	A2TS	POPTR_0008s22250	POPTR_0008s22250 (10)//POPTR_0082s00230 (10)	scaffold_8:16653217-16654750(+) (10)//scaffold_82:64113-65684(+) (10)	POPTR_0010s01730 (8)	Q94F30	Ubiquitin-like-specific protease ESD4	AT4G15880.1	Cysteine proteinases superfamily protein 	LOC_Os01g25370.1	"SUMO protease, putative, expressed"	Medtr8g138660.1	"Intermediate filament protein; Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.218667.1.S1_at	A	A1TS	POPTR_0008s22280	POPTR_0008s22280 (11)	scaffold_8:16681274-16681722(-) (11)	NA	NA	NA	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218668.1.S1_at	A	A1TS	POPTR_0008s22290	POPTR_0008s22290 (11)	scaffold_8:16685936-16687123(+) (11)	NA	NA	NA	AT2G47710.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os12g36640.2	"universal stress protein domain containing protein, putative, expressed"	Medtr1g108490.2	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
PtpAffx.218669.1.S1_at	A	A1TS	POPTR_0008s22320	POPTR_0008s22320 (11)	scaffold_8:16716457-16717273(+) (11)	NA	NA	NA	AT4G15890.1	binding 	LOC_Os12g36170.1	"HEAT repeat family protein, putative, expressed"	Medtr7g134010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218670.1.S1_at	A	A1TS	POPTR_0008s22330	POPTR_0008s22330 (11)	scaffold_8:16724421-16725005(-) (11)	NA	NA	NA	AT3G06890.1	unknown protein; Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g138610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218671.1.S1_at	A	A1TS	POPTR_0008s22340	POPTR_0008s22340 (11)	scaffold_8:16729212-16729627(-) (11)	NA	NA	NA	AT1G11925.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218686.1.S1_s_at	A	A1TS	POPTR_0131s00220	POPTR_0131s00220 (11)	scaffold_131:19582-19706(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G23550.1	MATE efflux family protein 	LOC_Os07g31884.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.218689.1.S1_s_at	A	A2TS	POPTR_0008s19560	POPTR_0010s04910 (11)//POPTR_0008s19560 (11)	scaffold_10:6113996-6114331(-) (11)//scaffold_8:13486325-13486660(+) (11)	NA	Q9XIE6	Phospholipid-transporting ATPase 3	AT1G59820.1	aminophospholipid ATPase 3 	LOC_Os10g27220.1	"phospholipid-transporting ATPase 3, putative, expressed"	Medtr5g038220.1	"ATPase, E1-E2 type "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.218690.1.S1_s_at	A	A1TS	POPTR_0006s17820	POPTR_0006s17820 (11)	scaffold_6:16026565-16027352(-) (11)	NA	NA	NA	AT4G15450.1	Senescence/dehydration-associated protein-related 	LOC_Os01g52480.1	"senescence-associated protein, putative, expressed"	Medtr4g159850.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218693.1.S1_at	A	A1TS	POPTR_0006s17790	POPTR_0006s17790 (11)	scaffold_6:15969161-15969393(-) (11)	NA	NA	NA	AT3G46620.1	zinc finger (C3HC4-type RING finger) family protein 	NA	NA	Medtr4g092190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218694.1.S1_s_at	A	A2TS	POPTR_0006s17780	POPTR_0006s17780 (11)//POPTR_0007s06560 (9)	scaffold_6:15950921-15951463(+) (11)//scaffold_7:4957306-4957807(+) (9)	NA	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218695.1.S1_at	A	A1TS	POPTR_0006s17770	POPTR_0006s17770 (11)	scaffold_6:15930666-15934407(+) (11)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218696.1.S1_at	A	A1TS	POPTR_0006s17760	POPTR_0006s17760 (11)	scaffold_6:15926214-15926424(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218698.1.S1_at	A	A1TS	POPTR_0006s17740	POPTR_0006s17740 (11)	scaffold_6:15915014-15915580(+) (11)	NA	Q3ECB8	Pentatricopeptide repeat-containing protein At1g77170	AT1G77170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g42610.1	"pentatricopeptide, putative, expressed"	Medtr4g159620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218699.1.S1_a_at	A	A1TS	POPTR_0006s17680	POPTR_0006s17680 (11)	scaffold_6:15817793-15817949(+) (11)//scaffold_6:15817870-15817953(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218700.1.S1_at	A	A1TS	POPTR_0006s17670	POPTR_0006s17670 (11)	scaffold_6:15782966-15783256(+) (11)	NA	Q9M080	Ethylene-responsive transcription factor ERF043	AT4G32800.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43970.1	"AP2 domain containing protein, expressed"	Medtr4g159580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.218700.1.S1_s_at	A	A2TS	POPTR_0006s17670	POPTR_0018s09270 (11)//POPTR_0006s17670 (11)	scaffold_18:10135207-10135436(+) (11)//scaffold_6:15783112-15783341(+) (11)	NA	Q9M080	Ethylene-responsive transcription factor ERF043	AT4G32800.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43970.1	"AP2 domain containing protein, expressed"	Medtr4g159580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.218700.1.S1_x_at	A	A1TS	POPTR_0006s17670	POPTR_0006s17670 (11)	scaffold_6:15782966-15783256(+) (11)	NA	Q9M080	Ethylene-responsive transcription factor ERF043	AT4G32800.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43970.1	"AP2 domain containing protein, expressed"	Medtr4g159580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.218702.1.S1_s_at	A	A2TS	POPTR_0017s05130	POPTR_0017s05130 (11)//POPTR_0017s05160 (9)	scaffold_17:3944267-3944863(-) (11)//scaffold_17:3953077-3953668(+) (9)	NA	NA	NA	AT2G43490.6	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g01010.2	"TBC domain containing protein, expressed"	Medtr5g074600.1	RabGAP/TBC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218705.1.S1_at	A	A1TS	POPTR_0010s10100	POPTR_0010s10100 (9)	scaffold_10:10676203-10676422(-) (9)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT4G27570.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g26950.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g109090.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218714.1.S1_at	A	A1TS	POPTR_0907s00020	POPTR_0907s00020 (11)	scaffold_43:139613-140307(+) (10)//scaffold_907:6380-7073(+) (11)	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218714.1.S1_s_at	A	A3TS	POPTR_0017s14590	POPTR_0907s00020 (11)//POPTR_0017s14590 (11)//POPTR_0035s00330 (10)	scaffold_117:49371-49560(+) (9)//scaffold_17:14593797-14593989(-) (11)//scaffold_35:185708-185900(-) (10)//scaffold_35:210693-210885(-) (11)//scaffold_43:139937-140128(+) (11)//scaffold_907:6702-6894(+) (11)	NA	Q8L6J3	"DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial"	AT5G15700.1	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.218719.1.S1_s_at	A	A4MS	POPTR_0017s14590	POPTR_0117s00200 (11)//POPTR_0043s00260 (11)//POPTR_0017s14590 (11)//POPTR_0017s13770 (10)	scaffold_117:407-544(+) (11)//scaffold_117:21586-21723(+) (11)//scaffold_117:29249-29386(+) (11)//scaffold_117:52984-53121(+) (11)//scaffold_17:13939234-13939371(+) (10)//scaffold_17:13967696-13967818(+) (10)//scaffold_17:14590525-14590662(-) (11)//scaffold_35:87202-87339(-) (11)//scaffold_43:98880-99017(+) (11)	NA	Q8L6J3	"DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial"	AT5G15700.1	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.218720.1.S1_x_at	A	A1MS	POPTR_0043s00260	POPTR_0043s00260 (11)	scaffold_43:95637-95814(+) (11)	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.2	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077250.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218721.1.S1_at	A	A1TS	POPTR_0043s00210	POPTR_0043s00210 (11)	scaffold_43:10123-10557(+) (11)	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.2	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077250.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218723.1.S1_at	A	A1MS	POPTR_0043s00220	POPTR_0043s00220 (11)	scaffold_43:32334-32369(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT1G34190.1	NAC domain containing protein 17 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr5g084760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.218726.1.S1_x_at	A	A1TS	POPTR_0035s00410	POPTR_0035s00410 (11)	scaffold_35:244960-247995(-) (11)	POPTR_0017s14590 (8)//POPTR_0017s13770 (8)//POPTR_0117s00200 (7)	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.2	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077250.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218738.1.S1_at	A	A1MS	POPTR_0009s05940	POPTR_0009s05940 (11)	scaffold_9:5897209-5897406(+) (11)	NA	Q54FB7	Xanthine dehydrogenase	AT4G34890.1	xanthine dehydrogenase 1 	LOC_Os03g31550.1	"aldehyde oxidase, putative, expressed"	Medtr2g117560.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0051536|iron-sulfur cluster binding||GO:0046872|metal ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.218738.1.S1_x_at	A	A1MS	POPTR_0009s05940	POPTR_0009s05940 (11)	scaffold_9:5897209-5897406(+) (11)	NA	Q54FB7	Xanthine dehydrogenase	AT4G34890.1	xanthine dehydrogenase 1 	LOC_Os03g31550.1	"aldehyde oxidase, putative, expressed"	Medtr2g117560.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0051536|iron-sulfur cluster binding||GO:0046872|metal ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.21874.1.S1_a_at	A	A1TS	POPTR_0003s12590	POPTR_0003s12590 (11)	scaffold_3:13117094-13117396(-) (11)	NA	Q2NL00	Glutathione S-transferase theta-1	AT5G41210.1	glutathione S-transferase THETA 1 	LOC_Os11g37730.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr4g149550.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21874.2.S1_at	A	A1TS	POPTR_0003s12590	POPTR_0003s12590 (11)	scaffold_3:13116916-13118284(-) (11)	NA	Q2NL00	Glutathione S-transferase theta-1	AT5G41210.1	glutathione S-transferase THETA 1 	LOC_Os11g37730.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr4g149550.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218743.1.S1_at	A	A1MS	POPTR_0002s01170	POPTR_0002s01170 (11)	scaffold_2:615854-616058(+) (11)	NA	C5D6U5	2-succinylbenzoate--CoA ligase	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008840.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.218743.1.S1_x_at	A	A1TS	POPTR_0002s01170	POPTR_0002s01170 (9)	scaffold_2:615854-616058(+) (11)	NA	C5D6U5	2-succinylbenzoate--CoA ligase	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008840.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.218748.1.S1_s_at	A	A1TS	POPTR_0019s09480	POPTR_0019s09480 (11)	scaffold_19:11019174-11019540(-) (11)	POPTR_0022s00905 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218750.1.S1_at	A	A1MS	POPTR_0019s01200	POPTR_0019s01200 (11)	scaffold_19:913450-920259(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.218751.1.S1_at	A	A1MS	POPTR_0010s03980	POPTR_0010s03980 (9)	scaffold_10:4772171-4772245(+) (9)	NA	Q8WTR2	Dual specificity protein phosphatase 19	AT3G23610.2	dual specificity protein phosphatase 1 	LOC_Os01g29469.1	"dual specificity protein phosphatase, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.218751.1.S1_s_at	A	A1TS	POPTR_0010s03980	POPTR_0010s03980 (11)	scaffold_10:4772385-4773125(+) (11)	NA	Q8WTR2	Dual specificity protein phosphatase 19	AT3G23610.2	dual specificity protein phosphatase 1 	LOC_Os01g29469.1	"dual specificity protein phosphatase, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.218754.1.S1_at	A	A1TS	POPTR_0005s15950	POPTR_0005s15950 (9)	scaffold_5:12607757-12607847(-) (9)	POPTR_0001s02000 (7)	Q8IYB7	DIS3-like exonuclease 2	AT1G77680.1	Ribonuclease II/R family protein 	LOC_Os02g51780.1	"ribonuclease protein, putative, expressed"	Medtr5g065170.1	Ribonuclease II 	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.218763.1.S1_at	A	A1MS	POPTR_0027s00480	POPTR_0027s00480 (11)	scaffold_27:360326-360377(+) (11)//scaffold_3:2311950-2312001(-) (11)//scaffold_3:5009116-5009167(+) (10)	POPTR_0008s18700 (6)//POPTR_0008s18480 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218765.1.S1_at	A	A1TS	POPTR_0001s46040	POPTR_0001s46040 (11)	scaffold_1:46533735-46533959(+) (11)	NA	NA	NA	AT1G20925.1	Auxin efflux carrier family protein 	LOC_Os09g31478.2	"auxin efflux carrier component, putative, expressed"	Medtr8g087050.1	Auxin Efflux Carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218767.1.S1_s_at	A	A1TS	POPTR_0012s13130	POPTR_0012s13130 (11)	scaffold_12:13404125-13404667(-) (11)	NA	Q05047	Secologanin synthase	AT5G52400.1	"cytochrome P450, family 715, subfamily A, polypeptide 1 "	LOC_Os02g57810.1	"cytochrome P450, putative"	Medtr1g127040.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.218769.1.S1_s_at	A	A1TS	POPTR_0010s06240	POPTR_0010s06240 (11)	scaffold_10:7656761-7656934(-) (11)	NA	Q3SXM5	Inactive hydroxysteroid dehydrogenase-like protein 1	AT1G24470.1	beta-ketoacyl reductase 2 	LOC_Os04g40730.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g102850.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.218770.1.S1_at	A	A1TS	POPTR_0001s43140	POPTR_0001s43140 (9)	scaffold_1:43192813-43192989(-) (9)	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT4G20400.1	JUMONJI 14 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	AC225479_20.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; FY-rich, C-terminal; Zinc finger, C5HC2-type AC225479.3 88241-93710 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.218771.1.S1_s_at	A	A2TS	POPTR_0001s43140	POPTR_0001s43140 (11)//POPTR_0011s15840 (11)	scaffold_1:43194809-43195697(-) (11)//scaffold_11:17887386-17888276(+) (11)	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT4G20400.1	JUMONJI 14 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	AC225479_20.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; FY-rich, C-terminal; Zinc finger, C5HC2-type AC225479.3 88241-93710 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.218772.1.S1_at	A	A1TS	POPTR_0014s19290	POPTR_0014s19290 (11)	scaffold_14:17192290-17193045(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218777.1.S1_s_at	A	A2TS	POPTR_0007s14130	POPTR_0007s14130 (11)//POPTR_0005s11680 (10)	scaffold_5:8506035-8506206(-) (10)//scaffold_7:14021843-14022044(+) (11)	NA	Q8LL11	Protein WUSCHEL	AT2G17950.1	Homeodomain-like superfamily protein 	LOC_Os04g56780.1	"homeobox domain containing protein, expressed"	Medtr5g021830.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.218781.1.S1_s_at	A	A1TS	POPTR_0008s16460	POPTR_0008s16460 (11)	scaffold_8:11038034-11038359(-) (11)	NA	NA	NA	AT3G23160.1	Protein of unknown function (DUF668) 	LOC_Os04g08764.1	"avr9/Cf-9 rapidly elicited protein 137, putative, expressed"	Medtr3g124300.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218785.1.S1_x_at	A	A1TS	POPTR_0015s01760	POPTR_0015s01760 (11)	scaffold_15:1164540-1164696(+) (11)	POPTR_0015s01770 (8)//POPTR_0248s00220 (8)//POPTR_0015s01780 (7)	NA	NA	AT4G25440.1	zinc finger WD40 repeat protein 1 	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.218788.1.S1_at	A	A1TS	POPTR_0018s06440	POPTR_0018s06440 (11)	scaffold_18:6358612-6359165(-) (11)	NA	NA	NA	AT5G19970.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g45900.1	"OsFBX20 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218789.1.S1_at	A	A1TS	POPTR_0018s06510	POPTR_0018s06510 (11)	scaffold_18:6414663-6415111(-) (11)	NA	Q38998	Potassium channel AKT1	AT2G26650.1	K+ transporter 1 	LOC_Os01g45990.1	"potassium channel AKT1, putative, expressed"	Medtr8g119290.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.218790.1.S1_at	A	A1TS	POPTR_0018s06530	POPTR_0018s06530 (11)	scaffold_18:6475611-6476450(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218791.1.S1_at	A	A1TS	POPTR_0018s06540	POPTR_0018s06540 (11)	scaffold_18:6477733-6479168(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218793.1.S1_s_at	A	A2TS	POPTR_0001s21380	POPTR_0001s21380 (11)//POPTR_0016s08420 (10)	scaffold_1:19811475-19811800(+) (11)//scaffold_16:6230845-6231170(+) (11)	NA	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr2g008450.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.218796.1.S1_x_at	A	A1MS	POPTR_0039s00380	POPTR_0039s00380 (11)	scaffold_39:211059-211106(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os12g12010.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.218802.1.S1_at	A	A1TS	POPTR_0200s00210	POPTR_0200s00210 (11)	scaffold_17:8324039-8324569(-) (9)//scaffold_200:13368-13891(-) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g39930.1	"receptor-like protein kinase, putative"	Medtr8g011850.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	NA	GO:0005529|sugar binding	NA
PtpAffx.218813.1.S1_at	A	A1TS	POPTR_0001s42610	POPTR_0001s42610 (10)	scaffold_1:42652301-42652346(-) (10)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr3g076270.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.218814.1.S1_at	A	A1TS	POPTR_0001s42590	POPTR_0001s42590 (11)	scaffold_1:42637181-42637561(-) (11)	NA	Q42484	Disease resistance protein RPS2	AT4G26090.1	NB-ARC domain-containing disease resistance protein 	NA	NA	Medtr1g062450.1	NB-ARC; AAA ATPase 	NA	GO:0005515|protein binding	NA
PtpAffx.218815.1.S1_at	A	A1TS	POPTR_0001s42570	POPTR_0001s42570 (11)	scaffold_1:42598955-42599450(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218817.1.S1_x_at	A	A1MS	POPTR_0001s42540	POPTR_0001s42540 (11)	scaffold_1:42556327-42556757(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.218818.1.S1_at	A	A1MS	POPTR_0001s42540	POPTR_0001s42540 (11)	scaffold_1:42555620-42555780(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.218818.1.S1_x_at	A	A1MS	POPTR_0001s42540	POPTR_0001s42540 (11)	scaffold_1:42555620-42555888(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.218819.1.S1_at	A	A1TS	POPTR_0013s06590	POPTR_0013s06590 (11)	scaffold_1:44093008-44093241(-) (9)//scaffold_13:5227848-5228344(+) (11)	POPTR_0001s43760 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218820.1.S1_at	A	A1TS	POPTR_0013s06600	POPTR_0013s06600 (11)	scaffold_13:5232097-5232629(+) (11)	POPTR_0001s42450 (6)	NA	NA	AT4G02260.3	RELA/SPOT homolog 1 	LOC_Os03g22160.1	"relA-SpoT like protein RSH1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218820.1.S1_x_at	A	A1TS	POPTR_0013s06600	POPTR_0013s06600 (11)	scaffold_13:5232075-5232629(+) (11)	NA	NA	NA	AT4G02260.3	RELA/SPOT homolog 1 	LOC_Os03g22160.1	"relA-SpoT like protein RSH1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218822.1.S1_at	A	A1TS	POPTR_0001s43825	POPTR_0001s43825 (11)	scaffold_1:44189300-44189934(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218822.1.S1_x_at	A	A1TS	POPTR_0001s43825	POPTR_0001s43825 (11)	scaffold_1:44189300-44189947(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218823.1.S1_x_at	A	A1TS	POPTR_0001s43660	POPTR_0001s43660 (10)	scaffold_1:43917804-43918065(-) (10)//scaffold_1:44187154-44187415(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218825.1.S1_x_at	A	A1MS	POPTR_0001s43800	POPTR_0001s43800 (11)	scaffold_1:44149026-44149598(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218826.1.S1_x_at	A	A1MS	POPTR_0001s43710	POPTR_0001s43710 (10)	scaffold_1:44017742-44018595(-) (10)	NA	Q42484	Disease resistance protein RPS2	AT4G26090.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218828.1.S1_at	A	A1TS	POPTR_0001s43790	POPTR_0001s43790 (11)	scaffold_1:44130163-44130199(-) (11)	NA	Q9FG90	Probable disease resistance protein At5g43740	AT5G43740.2	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr3g076270.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218829.1.S1_s_at	A	A3TS	POPTR_0001s42620	POPTR_0001s42620 (11)//POPTR_0013s06600 (11)//POPTR_0001s43780 (11)	scaffold_1:42661125-42661220(-) (11)//scaffold_1:43915719-43915812(-) (9)//scaffold_1:44088929-44089025(-) (11)//scaffold_1:44124817-44124912(-) (11)//scaffold_1:48064170-48064265(+) (11)//scaffold_1:48107953-48108031(+) (11)//scaffold_1:48230920-48230953(+) (9)//scaffold_1:48353249-48353348(+) (11)//scaffold_13:5232061-5232156(+) (11)	POPTR_0001s42450 (8)	NA	NA	AT4G02260.3	RELA/SPOT homolog 1 	LOC_Os03g22160.1	"relA-SpoT like protein RSH1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218832.1.S1_s_at	A	A2TS	POPTR_0163s00200	POPTR_0163s00200 (11)//POPTR_0019s13230 (10)	scaffold_163:162-457(-) (11)//scaffold_19:14181414-14181709(-) (11)	NA	C0LGT6	LRR receptor-like serine/threonine-protein kinase EFR	AT5G20480.1	EF-TU receptor 	LOC_Os11g07230.3	"receptor kinase, putative, expressed"	Medtr5g019030.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.218833.1.S1_s_at	A	A1TS	POPTR_0019s13220	POPTR_0019s13220 (11)	scaffold_19:14178998-14179181(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12440.1	"receptor kinase, putative, expressed"	Medtr6g038640.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218834.1.S1_s_at	A	A1MS	POPTR_0003s22260	POPTR_0003s22260 (11)	scaffold_3:20103281-20103509(-) (11)	NA	NA	NA	AT5G12930.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g31350.1	expressed protein	Medtr2g117870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218836.1.S1_s_at	A	A1TS	POPTR_0005s18160	POPTR_0005s18160 (11)	scaffold_5:16265415-16265988(-) (11)	NA	O81360	"Zeaxanthin epoxidase, chloroplastic"	AT5G67030.1	zeaxanthin epoxidase (ZEP) (ABA1) 	LOC_Os04g37619.1	"zeaxanthin epoxidase, chloroplast precursor, putative, expressed"	CU571152_22.1	Forkhead-associated CU571152.5 100554-94827 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218840.1.S1_s_at	A	A1TS	POPTR_0009s17070	POPTR_0009s17070 (11)	scaffold_9:12852114-12852282(+) (11)	NA	Q9FEA2	"Glutamyl-tRNA synthetase, chloroplastic/mitochondrial"	AT5G64050.1	glutamate tRNA synthetase 	LOC_Os02g02860.1	"glutamyl-tRNA synthetase, putative, expressed"	Medtr1g103230.1	"Glutamyl-tRNA synthetase, class Ic; Glutaminyl-tRNA synthetase; Glutathione S-transferase, C-terminal-like "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.218847.1.S1_at	A	A1TS	POPTR_0011s06380	POPTR_0011s06380 (9)	scaffold_11:6643596-6643699(-) (9)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.218847.1.S1_x_at	A	A1TS	POPTR_0011s06380	POPTR_0011s06380 (9)	scaffold_11:6643590-6643699(-) (9)//scaffold_11:6828113-6829106(-) (9)//scaffold_11:7011198-7012191(-) (9)//scaffold_11:7293250-7294229(-) (9)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.218850.1.S1_at	A	A1TS	POPTR_0011s06180	POPTR_0011s06180 (9)	scaffold_11:6269279-6270210(-) (9)	NA	Q9M0G7	Leucine-rich repeat receptor-like protein kinase PXL2	AT1G29730.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os11g40810.1	"receptor kinase, putative, expressed"	Medtr2g090600.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.218850.1.S1_x_at	A	A1TS	POPTR_0011s06180	POPTR_0011s06180 (9)	scaffold_11:6269279-6270210(-) (9)	NA	Q9M0G7	Leucine-rich repeat receptor-like protein kinase PXL2	AT1G29730.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os11g40810.1	"receptor kinase, putative, expressed"	Medtr2g090600.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.218851.1.S1_at	A	A1TS	POPTR_0011s06170	POPTR_0011s06170 (11)	scaffold_11:6259289-6260008(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218854.1.S1_s_at	A	A1TS	POPTR_0006s25230	POPTR_0006s25230 (11)	scaffold_11:6674905-6675035(+) (11)//scaffold_6:23642431-23642561(-) (11)	NA	O80592	Amino acid permease 8	AT1G10010.1	amino acid permease 8 	LOC_Os06g36180.1	"amino acid transporter, putative, expressed"	Medtr3g127950.1	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218860.1.S1_at	A	A1TS	POPTR_0013s07350	POPTR_0013s07350 (11)	scaffold_13:6136386-6136925(+) (11)	NA	Q493J1	30S ribosomal protein S5	AT1G64880.1	Ribosomal protein S5 family protein 	LOC_Os02g01230.2	"ribosomal protein, putative, expressed"	Medtr4g142760.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.218871.1.S1_s_at	A	A1TS	POPTR_0001s42440	POPTR_0001s42440 (11)	scaffold_1:42419947-42420697(+) (11)//scaffold_1:48162239-48162989(+) (9)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218872.1.S1_at	A	A1TS	POPTR_0001s42440	POPTR_0001s42440 (10)	scaffold_1:42420806-42421346(+) (11)//scaffold_1:48163098-48163638(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218873.1.S1_s_at	A	A2TS	POPTR_0001s42440	POPTR_0001s47815 (11)//POPTR_0001s42440 (11)	scaffold_1:42417012-42417082(+) (11)//scaffold_1:48160249-48160319(+) (11)	POPTR_0001s47840 (7)//POPTR_0001s42410 (7)//POPTR_0001s43820 (6)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218874.1.S1_at	A	A1TS	POPTR_0001s42430	POPTR_0001s42430 (11)	scaffold_1:42407372-42408504(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218876.1.S1_x_at	A	A1TS	POPTR_0001s42400	POPTR_0001s42400 (11)	scaffold_1:42363092-42363453(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g076270.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.218877.1.S1_s_at	A	A3TS	POPTR_0001s42395	POPTR_0001s45070 (11)//POPTR_0001s42395 (11)//POPTR_0001s47800 (11)	scaffold_1:42359847-42359884(+) (11)//scaffold_1:45379999-45380036(-) (11)//scaffold_1:48142366-48142403(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.218878.1.S1_x_at	A	A1TS	POPTR_0001s42390	POPTR_0001s42390 (11)	scaffold_1:42261593-42262242(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.21888.1.A1_a_at	A	A1TS	POPTR_0013s11970	POPTR_0013s11970 (11)	scaffold_13:12629030-12629593(-) (11)	NA	A1L1L3	Tyrosine-protein phosphatase non-receptor type 20	AT1G71860.3	protein tyrosine phosphatase 1 	LOC_Os12g07590.2	"Protein-tyrosine phosphatase domain containing protein, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0004725|protein tyrosine phosphatase activity	NA
PtpAffx.218880.1.S1_x_at	A	A1MS	POPTR_0001s42380	POPTR_0001s42380 (11)	scaffold_1:42181745-42182185(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218881.1.S1_at	A	A1MS	POPTR_0001s42380	POPTR_0001s42380 (11)	scaffold_1:42180619-42180729(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218892.1.S1_s_at	A	A1TS	POPTR_0004s19570	POPTR_0004s19570 (11)	scaffold_4:19373266-19373688(+) (11)	NA	Q652L2	Protein HIRA	AT3G44530.2	homolog of histone chaperone HIRA 	LOC_Os09g39420.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC235092_11.1	TUP1-like enhancer of split AC235092.1 68028-61680 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.218895.1.S1_s_at	A	A1TS	POPTR_0011s01250	POPTR_0011s01250 (11)	scaffold_11:712931-713295(+) (9)//scaffold_11:758727-759115(+) (11)//scaffold_11:771023-771411(+) (11)	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	NA	NA	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21890.1.A1_at	A	A1TS	POPTR_0017s01140	POPTR_0017s01140 (11)	scaffold_17:823309-824376(+) (11)	NA	Q54IF9	Myb-like protein G	AT5G52660.1	Homeodomain-like superfamily protein 	LOC_Os06g45840.1	"MYB transcription factor, putative, expressed"	AC235567_21.1	Homeodomain-related AC235567.1 79376-72886 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218901.1.S1_s_at	A	A1TS	POPTR_0010s04020	POPTR_0010s04020 (11)	scaffold_10:4835164-4836016(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218906.1.S1_x_at	A	A1MA	POPTR_0074s00240	POPTR_0074s00240 (9)	scaffold_3:1064763-1083241(+) (11)//scaffold_74:40667-40875(-) (9)//scaffold_74:68002-68207(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218910.1.S1_at	A	A1TS	POPTR_0726s00200	POPTR_0726s00200 (9)	scaffold_726:2346-2378(+) (9)	NA	Q9ZUI0	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os06g38650.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr4g084300.1	hypothetical protein 	NA	GO:0005515|protein binding	NA
PtpAffx.218910.1.S1_x_at	A	A1TS	POPTR_0726s00200	POPTR_0726s00200 (10)	scaffold_726:2251-2378(+) (10)	NA	Q9ZUI0	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os06g38650.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr4g084300.1	hypothetical protein 	NA	GO:0005515|protein binding	NA
PtpAffx.218912.1.S1_at	A	A1TS	POPTR_0011s06100	POPTR_0011s06100 (9)	scaffold_11:6133022-6133294(-) (10)//scaffold_11:7043254-7043526(-) (10)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G29720.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.218915.1.S1_s_at	A	A2TS	POPTR_0004s20600	POPTR_0004s20600 (11)//POPTR_0004s20620 (11)	scaffold_4:20077423-20078028(-) (11)//scaffold_4:20090794-20091400(-) (11)	POPTR_0009s15910 (6)	P80313	T-complex protein 1 subunit eta	AT3G11830.2	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g47320.1	"T-complex protein, putative, expressed"	Medtr5g094680.1	"GroEL-like chaperone, ATPase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218920.1.S1_s_at	A	A2TS	POPTR_0003s19650	POPTR_0003s19660 (10)//POPTR_0003s19650 (10)	scaffold_3:18325726-18336053(+) (11)//scaffold_3:18335818-18346347(+) (10)	POPTR_0003s19680 (8)	Q9LK64	ABC transporter C family member 3	AT3G13080.4	multidrug resistance-associated protein 3 	LOC_Os01g07870.1	"ABC transporter family protein, putative, expressed"	Medtr5g034390.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.218922.1.S1_at	A	A1TS	POPTR_0001s05750	POPTR_0001s05750 (11)	scaffold_1:4493381-4494833(+) (11)	NA	NA	NA	AT2G16770.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os06g50310.1	"E2F-related protein, putative, expressed"	Medtr4g098490.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.218922.1.S1_s_at	A	A1TS	POPTR_0001s05750	POPTR_0001s05750 (11)	scaffold_1:4493208-4493531(+) (11)	NA	NA	NA	AT2G16770.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os06g50310.1	"E2F-related protein, putative, expressed"	Medtr4g098490.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.218923.1.S1_at	A	A1TS	POPTR_0001s05770	POPTR_0001s05770 (11)	scaffold_1:4526123-4526623(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT2G03200.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g34920.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr8g039820.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218924.1.S1_at	A	A1TS	POPTR_0001s05790	POPTR_0001s05790 (11)	scaffold_1:4532523-4532993(-) (11)	NA	O22218	"Calcium-transporting ATPase 4, plasma membrane-type"	AT2G41560.1	"autoinhibited Ca(2+)-ATPase, isoform 4 "	LOC_Os12g04220.1	"calcium-transporting ATPase, plasma membrane-type, putative"	Medtr4g118290.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.218925.1.S1_at	A	A1TS	POPTR_0001s05830	POPTR_0001s05830 (11)	scaffold_1:4562572-4563165(-) (11)	NA	Q9LY71	Cytokinin dehydrogenase 6	AT3G63440.1	cytokinin oxidase/dehydrogenase 6 	LOC_Os05g31040.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr4g118430.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
PtpAffx.218926.1.S1_at	A	A1TS	POPTR_0001s05840	POPTR_0001s05840 (11)	scaffold_1:4576897-4577397(-) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT5G13460.1	IQ-domain 11 	LOC_Os03g23960.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr4g118520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218927.1.S1_at	A	A1TS	POPTR_0001s05850	POPTR_0001s05850 (11)	scaffold_1:4585821-4586344(+) (11)	NA	NA	NA	AT3G51940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03990.1); Has 215 Blast hits to 164 proteins in 38 species: Archae - 0; Bacteria - 35; Metazoa - 16; Fungi - 18; Plants - 121; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 	LOC_Os11g04510.1	expressed protein	Medtr3g026470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218929.1.S1_at	A	A1MS	POPTR_0001s05890	POPTR_0001s05890 (11)	scaffold_1:4622747-4622980(+) (11)//scaffold_1:4649363-4649600(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218931.1.S1_s_at	A	A2TS	POPTR_0001s05900	POPTR_0001s05900 (11)//POPTR_0001s05930 (11)	scaffold_1:4626585-4626861(+) (11)//scaffold_1:4653282-4653558(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218932.1.S1_at	A	A2TS	POPTR_0001s05915	POPTR_0001s05915 (11)//POPTR_0001s05940 (10)	scaffold_1:4632665-4633039(+) (11)//scaffold_1:4658348-4658722(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218938.1.S1_s_at	A	A1TS	POPTR_0018s01780	POPTR_0018s01780 (11)	scaffold_18:1627946-1628603(-) (11)	NA	NA	NA	AT3G19720.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g07880.1	"dynamin family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218943.1.S1_at	A	A1TS	POPTR_0002s16120	POPTR_0002s16120 (11)	scaffold_2:12019365-12019840(-) (11)	POPTR_0014s08020 (6)	NA	NA	AT4G00450.1	RNA polymerase II transcription mediators 	LOC_Os07g45400.1	expressed protein	Medtr7g087340.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218944.1.S1_s_at	A	A4TS	POPTR_0003s01880	POPTR_0003s01950 (11)//POPTR_0003s01940 (11)//POPTR_0003s01920 (11)//POPTR_0003s01880 (11)	scaffold_3:1755344-1755586(-) (11)//scaffold_3:1800809-1801051(-) (11)//scaffold_3:1817887-1818129(-) (11)//scaffold_3:1837933-1838175(-) (11)	NA	Q4U4N4	Interferon-induced GTP-binding protein Mx2	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.218945.1.S1_at	A	A4TA	POPTR_0003s01950	POPTR_0003s01950 (10)//POPTR_0003s01940 (9)//POPTR_0003s01920 (9)//POPTR_0003s01880 (9)	scaffold_3:1754255-1755342(+) (9)//scaffold_3:1799720-1800807(+) (9)//scaffold_3:1816798-1817885(+) (9)//scaffold_3:1836844-1837931(+) (10)	NA	Q4U4N4	Interferon-induced GTP-binding protein Mx2	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.218949.1.S1_x_at	A	A1TS	POPTR_0003s02030	POPTR_0003s02030 (11)	scaffold_3:1967135-1968376(-) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT2G25470.1	receptor like protein 21 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.218950.1.S1_at	A	A1TS	POPTR_0002s22970	POPTR_0002s22970 (11)	scaffold_2:20236714-20237533(+) (11)	NA	Q8K370	Acyl-CoA dehydrogenase family member 10	AT3G06810.1	acyl-CoA dehydrogenase-related 	LOC_Os07g47820.1	"acyl-CoA dehydrogenase family member 10, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218957.1.S1_s_at	A	A1TS	POPTR_0016s04730	POPTR_0016s04730 (11)	scaffold_16:2820136-2820282(-) (11)	NA	NA	NA	AT2G44380.1	Cysteine/Histidine-rich C1 domain family protein 	NA	NA	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.218958.1.S1_x_at	A	A1TS	POPTR_0017s09440	POPTR_0017s09440 (11)	scaffold_17:8051429-8051926(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218959.1.S1_at	A	A1TS	POPTR_0017s09450	POPTR_0017s09450 (11)	scaffold_17:8068677-8069450(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21896.1.A1_at	A	A1TS	POPTR_0010s07570	POPTR_0010s07570 (10)	scaffold_10:8598447-8598883(-) (10)	NA	Q38831	Auxin-responsive protein IAA13	AT2G33310.3	auxin-induced protein 13 	LOC_Os02g57250.1	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr4g159330.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.21896.2.S1_at	A	A1TS	POPTR_0008s17220	POPTR_0008s17220 (11)	scaffold_8:11568660-11568813(+) (11)	NA	Q38831	Auxin-responsive protein IAA13	AT2G33310.3	auxin-induced protein 13 	LOC_Os02g57250.2	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr4g159330.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.21896.2.S1_s_at	A	A2TS	POPTR_0008s17220	POPTR_0008s17220 (11)//POPTR_0010s07570 (11)	scaffold_10:8600302-8601134(-) (11)//scaffold_8:11568946-11569791(+) (11)	NA	Q38831	Auxin-responsive protein IAA13	AT2G33310.3	auxin-induced protein 13 	LOC_Os02g57250.2	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr4g159330.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.218962.1.S1_x_at	A	A4TS	POPTR_0017s05040	POPTR_0017s05040 (11)//POPTR_0047s00255 (9)//POPTR_0017s05120 (9)//POPTR_0017s09490 (9)	scaffold_17:3886458-3886649(-) (11)//scaffold_17:3941332-3941466(-) (9)//scaffold_17:8110465-8110599(+) (9)//scaffold_47:121766-121900(+) (9)	POPTR_0017s05060 (8)	Q0JC27	Protein NLP2	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218965.1.S1_s_at	A	A3TS	POPTR_0017s05100	POPTR_0017s09500 (11)//POPTR_0047s00270 (11)//POPTR_0017s05100 (11)	scaffold_17:3929403-3929593(-) (11)//scaffold_17:8117408-8117598(-) (11)//scaffold_47:127167-127357(-) (11)	NA	O22864	Protein NLP8	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.218966.1.S1_at	A	A1TS	POPTR_0047s00200	POPTR_0047s00200 (11)	scaffold_47:11193-11309(-) (11)	NA	Q0JC27	Protein NLP2	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218966.1.S1_s_at	A	A3TS	POPTR_0017s04990	POPTR_0047s00200 (11)//POPTR_0017s04990 (11)//POPTR_0017s09460 (11)	scaffold_17:3843929-3844183(-) (11)//scaffold_17:8074573-8074827(-) (11)//scaffold_47:11501-11755(-) (11)	NA	Q6EI05	DELLA protein GAIP-B	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0003677|DNA binding	NA
PtpAffx.218967.1.S1_s_at	A	A2TS	POPTR_0017s05000	POPTR_0047s00210 (11)//POPTR_0017s05000 (11)	scaffold_17:3860281-3861235(-) (11)//scaffold_47:29132-30152(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218969.1.S1_s_at	A	A2TS	POPTR_0047s00220	POPTR_0047s00220 (11)//POPTR_0047s00270 (11)	scaffold_17:3882373-3882459(-) (11)//scaffold_17:3901961-3902047(-) (10)//scaffold_17:3930506-3930592(-) (11)//scaffold_47:32540-32626(-) (11)//scaffold_47:128270-128356(-) (11)	NA	O22864	Protein NLP8	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0003677|DNA binding	NA
PtpAffx.21897.1.S1_a_at	A	A1TS	POPTR_0001s41230	POPTR_0001s41230 (11)	scaffold_1:40870571-40872226(+) (11)	NA	NA	NA	AT3G15395.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g10370.1	"hrpN-interacting protein from Malus, putative"	Medtr8g047560.1	"HrpN-interacting protein from Malus, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218970.1.S1_at	A	A1TS	POPTR_0047s00230	POPTR_0047s00230 (11)	scaffold_47:31117-36176(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218971.1.S1_at	A	A1TS	POPTR_0047s00240	POPTR_0047s00240 (11)	scaffold_47:57542-57765(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g50624.2	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.218979.1.S1_at	A	A3MS	POPTR_0003s18440	POPTR_0003s18440 (11)//POPTR_0003s18480 (9)//POPTR_0075s00200 (9)	scaffold_3:17519056-17519245(+) (11)//scaffold_3:17544967-17545009(+) (9)//scaffold_75:28864-28906(+) (9)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.218979.1.S1_x_at	A	A1MS	POPTR_0003s18440	POPTR_0003s18440 (11)	scaffold_3:17518461-17519245(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.218982.1.S1_at	A	A2TS	POPTR_0012s15130	POPTR_0012s15130 (11)//POPTR_0012s12260 (9)	scaffold_12:12497232-12497744(+) (9)//scaffold_12:14743373-14751928(-) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218983.1.S1_at	A	A1TS	POPTR_0012s15140	POPTR_0012s15140 (11)	scaffold_12:14767858-14768983(-) (11)	NA	NA	NA	AT5G12260.1	BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g18060.1	"sugar transporter superfamily, putative, expressed"	Medtr8g026520.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218983.1.S1_s_at	A	A2TS	POPTR_0009s07130	POPTR_0009s07130 (11)//POPTR_0012s15140 (11)	scaffold_12:14768122-14768299(-) (11)//scaffold_9:6745764-6745941(+) (11)	NA	NA	NA	AT5G12260.1	BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g18060.1	"sugar transporter superfamily, putative, expressed"	Medtr8g026520.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218983.1.S1_x_at	A	A1TS	POPTR_0012s15140	POPTR_0012s15140 (11)	scaffold_12:14767858-14768982(-) (11)	NA	NA	NA	AT5G12260.1	BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g18060.1	"sugar transporter superfamily, putative, expressed"	Medtr8g026520.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218984.1.S1_x_at	A	A1MS	POPTR_0012s15160	POPTR_0012s15160 (11)	scaffold_12:14774300-14774801(-) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g45180.1	"NBS-LRR disease resistance protein, putative"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218985.1.S1_x_at	A	A3TS	POPTR_0012s12350	POPTR_0012s12350 (11)//POPTR_0012s15160 (11)//POPTR_0012s14990 (11)	scaffold_12:12572453-12572498(+) (11)//scaffold_12:14667430-14667475(-) (11)//scaffold_12:14778799-14778844(-) (11)	POPTR_0012s15020 (7)	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218986.1.S1_x_at	A	A1TS	POPTR_0012s15110	POPTR_0012s15110 (10)	scaffold_12:12504012-12504090(+) (9)//scaffold_12:12518019-12518180(-) (11)//scaffold_12:14745231-14745330(-) (10)	POPTR_0012s12280 (8)	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g041090.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218992.1.S1_s_at	A	A1TS	POPTR_0012s12280	POPTR_0012s12280 (10)	scaffold_12:12504237-12504803(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218993.1.S1_at	A	A1TS	POPTR_0012s12270	POPTR_0012s12270 (11)	scaffold_12:12501544-12502125(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g020460.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.218995.1.S1_at	A	A1TS	POPTR_0012s12250	POPTR_0012s12250 (10)	scaffold_12:12492880-12493218(+) (10)	NA	NA	NA	AT2G35150.1	EXORDIUM like 1 	LOC_Os07g31430.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218996.1.S1_s_at	A	A1MS	POPTR_0012s12190	POPTR_0012s12190 (9)	scaffold_12:12440523-12440573(-) (9)//scaffold_12:12450207-12450272(+) (11)//scaffold_12:14848447-14848512(-) (11)	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.2	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219.1.S1_at	A	A1TS	POPTR_0009s06720	POPTR_0009s06720 (11)	scaffold_9:6441869-6442357(-) (11)	NA	P82658	"Thylakoid lumenal 19 kDa protein, chloroplastic"	AT3G63540.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os08g39430.1	"thylakoid lumenal 19 kDa protein, chloroplast precursor, putative"	Medtr3g030290.1	"Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219004.1.S1_s_at	A	A1TS	POPTR_0008s12540	POPTR_0008s12540 (11)	scaffold_8:8115842-8116061(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G15170.1	MATE efflux family protein 	LOC_Os05g48040.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.219005.1.S1_s_at	A	A2TS	POPTR_0019s13250	POPTR_0163s00230 (11)//POPTR_0019s13250 (11)	scaffold_163:28142-28327(-) (11)//scaffold_19:14195504-14195689(-) (11)	NA	NA	NA	AT2G20725.1	CAAX amino terminal protease family protein 	LOC_Os08g33900.1	"CAAX amino terminal protease family protein, putative"	Medtr1g125900.3	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.219006.1.S1_at	A	A1TS	POPTR_0013s03370	POPTR_0013s03370 (9)	scaffold_13:2084397-2084604(-) (9)	NA	O74343	Putative pseudouridine synthase C1A4.09	AT3G04820.1	Pseudouridine synthase family protein 	LOC_Os01g56620.1	"pseudouridylate synthase, putative, expressed"	Medtr7g140700.1	"RNA binding ^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21901.2.A1_a_at	A	A1TS	POPTR_0011s10330	POPTR_0011s10330 (10)	scaffold_11:12773383-12773828(+) (10)	NA	Q3Y4F4	Chalcone--flavonone isomerase	AT1G53520.1	Chalcone-flavanone isomerase family protein 	LOC_Os02g21520.1	"chalcone isomerase 3, putative, expressed"	Medtr1g146220.1	Chalcone-flavanone isomerase 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
PtpAffx.219012.1.S1_s_at	A	A1TS	POPTR_0019s14700	POPTR_0019s14700 (11)	scaffold_19:15388702-15388986(-) (11)	NA	Q8LL69	3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase	AT2G25150.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g06180.1	"transferase family protein, putative, expressed"	Medtr4g073210.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.219022.1.S1_at	A	A1TS	POPTR_0016s11450	POPTR_0016s11450 (11)	scaffold_16:10419184-10419458(-) (11)	NA	A4GYS4	Apocytochrome f	ATCG00540.1	photosynthetic electron transfer A 	LOC_Os10g21290.1	"apocytochrome f precursor, putative"	Medtr5g065380.1	Cytochrome f; GRAS transcription factor 	GO:0015979|photosynthesis	GO:0020037|heme binding||GO:0009055|electron carrier activity	GO:0031361|integral to thylakoid membrane
PtpAffx.219033.1.S1_x_at	A	A1TS	POPTR_0005s04530	POPTR_0005s04530 (11)	scaffold_5:3033116-3033543(-) (11)	NA	NA	NA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07360.2	"frigida, putative, expressed"	Medtr2g132640.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219034.1.S1_at	A	A2MS	POPTR_0008s08020	POPTR_0008s08020 (11)//POPTR_1829s00200 (11)	scaffold_1829:815-862(-) (11)//scaffold_8:4950962-4951009(-) (11)	NA	Q54XB0	Putative mediator of RNA polymerase II transcription subunit 22	AT1G07950.1	Surfeit locus protein 5 subunit 22 of Mediator complex 	LOC_Os08g37480.2	"mediator of RNA polymerase II transcription subunit 22, putative, expressed"	Medtr2g080730.1	Surfeit locus 5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.219034.1.S1_s_at	A	A2TS	POPTR_0008s08020	POPTR_0008s08020 (11)//POPTR_1829s00200 (11)	scaffold_1829:853-1381(-) (11)//scaffold_8:4951000-4951526(-) (11)	NA	Q54XB0	Putative mediator of RNA polymerase II transcription subunit 22	AT1G07950.1	Surfeit locus protein 5 subunit 22 of Mediator complex 	LOC_Os08g37480.2	"mediator of RNA polymerase II transcription subunit 22, putative, expressed"	Medtr2g080730.1	Surfeit locus 5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.219045.1.S1_at	A	A2MS	POPTR_0008s22050	POPTR_0008s22050 (11)//POPTR_0008s22260 (10)	scaffold_8:16389284-16389758(+) (11)//scaffold_8:16662349-16662821(-) (10)	NA	Q6S004	Kinesin-related protein 6	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g06280.1	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr8g138640.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.219045.1.S1_s_at	A	A2TS	POPTR_0008s22050	POPTR_0008s22050 (11)//POPTR_0008s22260 (11)	scaffold_8:16389197-16389533(+) (11)//scaffold_8:16662572-16662908(-) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g06280.1	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr8g138640.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.219046.1.S1_at	A	A1TS	POPTR_0008s22020	POPTR_0008s22020 (10)	scaffold_8:16366715-16366824(+) (10)	NA	O81974	Cytochrome P450 71D8	AT3G48290.2	"cytochrome P450, family 71, subfamily A, polypeptide 24 "	LOC_Os06g43350.1	"cytochrome P450, putative, expressed"	Medtr5g102030.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219046.1.S1_s_at	A	A3TS	POPTR_0008s22020	POPTR_0008s22020 (11)//POPTR_0008s21820 (10)//POPTR_0008s22030 (10)	scaffold_8:16141716-16142074(-) (11)//scaffold_8:16366691-16367158(+) (11)//scaffold_8:16366800-16371640(+) (11)	NA	O81974	Cytochrome P450 71D8	AT3G48290.2	"cytochrome P450, family 71, subfamily A, polypeptide 24 "	LOC_Os06g43350.1	"cytochrome P450, putative, expressed"	Medtr5g102030.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219049.1.S1_at	A	A2TS	POPTR_0008s21806	POPTR_0008s21806 (9)//POPTR_0008s21970 (9)	scaffold_7:7358322-7358891(+) (10)//scaffold_8:16056436-16057002(-) (9)//scaffold_8:16327946-16328515(+) (11)	POPTR_0017s11630 (6)	NA	NA	NA	NA	LOC_Os11g33938.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219050.1.S1_at	A	A1MS	POPTR_0008s21970	POPTR_0008s21970 (11)	scaffold_1:15138746-15148401(-) (10)//scaffold_1:42565237-42565342(-) (11)//scaffold_17:11431849-11431954(-) (11)//scaffold_3:8250445-8250550(+) (11)//scaffold_4:18875608-18875755(+) (10)//scaffold_8:16057904-16058009(-) (11)//scaffold_8:16326933-16327038(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g42170.1	zinc knuckle family protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.219050.1.S1_x_at	A	A1MS	POPTR_0008s21970	POPTR_0008s21970 (11)	scaffold_1:42565237-42565342(-) (9)//scaffold_17:11431849-11432099(-) (10)//scaffold_3:8250445-8250550(+) (9)//scaffold_4:18875463-18875755(+) (11)//scaffold_8:16057904-16058044(-) (10)//scaffold_8:16326788-16327038(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g42170.1	zinc knuckle family protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.219058.1.S1_at	A	A1TS	POPTR_0018s08720	POPTR_0018s08720 (10)	scaffold_18:9606411-9606674(+) (11)	NA	P32518	Deoxyuridine 5'-triphosphate nucleotidohydrolase	AT3G46940.1	DUTP-PYROPHOSPHATASE-LIKE 1 	LOC_Os03g46640.1	"deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219059.1.S1_x_at	A	A1MS	POPTR_0259s00210	POPTR_0259s00210 (11)	scaffold_259:9213-9388(+) (11)	POPTR_0010s17740 (7)	NA	NA	AT3G19830.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g58230.2	"C2 domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219060.1.S1_at	A	A1TS	POPTR_0259s00200	POPTR_0259s00200 (11)	scaffold_259:8160-8606(+) (11)	NA	NA	NA	AT5G42710.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g56430.1	expressed protein	Medtr4g154410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219060.1.S1_s_at	A	A1TS	POPTR_0259s00200	POPTR_0259s00200 (11)	scaffold_259:8028-8565(+) (11)	NA	NA	NA	AT5G42710.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g56430.1	expressed protein	Medtr4g154410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219061.1.S1_s_at	A	A2TS	POPTR_0017s05070	POPTR_0017s05140 (11)//POPTR_0017s05070 (11)	scaffold_17:3915475-3915762(+) (11)//scaffold_17:3945864-3946151(-) (11)//scaffold_48:10014-10301(-) (10)	NA	Q9M1B0	Protein NLP9	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.219062.1.S1_at	A	A1TS	POPTR_0014s11610	POPTR_0014s11610 (11)	scaffold_14:8607033-8607877(+) (11)	NA	P43299	Protein PROLIFERA	AT4G02060.2	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os12g37400.1	"MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed"	Medtr7g132920.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.219063.1.S1_at	A	A1TS	POPTR_0037s00200	POPTR_0037s00200 (11)	scaffold_37:138602-138890(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219067.1.S1_at	A	A1MS	POPTR_0007s01230	POPTR_0007s01230 (11)	scaffold_7:673585-673632(-) (11)	NA	Q6LA43	Two-component response regulator-like APRR2	AT2G20570.1	GBF's pro-rich region-interacting factor 1 	LOC_Os06g24070.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr4g108850.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219067.1.S1_s_at	A	A1TS	POPTR_0007s01230	POPTR_0007s01230 (11)	scaffold_7:674303-674513(-) (11)	NA	Q6LA43	Two-component response regulator-like APRR2	AT2G20570.1	GBF's pro-rich region-interacting factor 1 	LOC_Os06g24070.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr4g108850.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219068.1.S1_at	A	A1TS	POPTR_0005s28420	POPTR_0005s28420 (10)	scaffold_5:25754983-25755597(-) (11)	NA	NA	NA	AT4G24530.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr3g149400.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219070.1.S1_at	A	A1TS	POPTR_0005s28380	POPTR_0005s28380 (11)	scaffold_5:25705117-25705880(-) (11)	NA	Q91784	Chromosome-associated kinesin KIF4	AT5G60930.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr5g075270.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.219071.1.S1_at	A	A1TS	POPTR_0005s28370	POPTR_0005s28370 (11)	scaffold_5:25666830-25667046(-) (11)	NA	Q06RD1	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g21250.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219074.1.S1_at	A	A1TS	POPTR_0005s13060	POPTR_0005s13060 (11)	scaffold_5:9992476-9992800(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219078.1.S1_at	A	A1TS	POPTR_0012s11620	POPTR_0012s11620 (11)	scaffold_12:11976301-11976541(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219080.1.S1_at	A	A1TS	POPTR_0012s11560	POPTR_0012s11560 (9)	scaffold_12:11936795-11939334(+) (11)	NA	P64319	ATP-dependent DNA helicase pcrA	AT4G25120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g30980.1	"uvrD/REP helicase family protein, putative, expressed"	Medtr1g087020.1	UvrD/REP helicase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004003|ATP-dependent DNA helicase activity	NA
PtpAffx.219081.1.S1_at	A	A1TS	POPTR_0012s11540	POPTR_0012s11540 (11)	scaffold_12:11919297-11923739(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT4G10720.2	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr8g087750.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219081.1.S1_x_at	A	A1TS	POPTR_0012s11540	POPTR_0012s11540 (11)	scaffold_12:11919255-11923734(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT4G10720.2	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr8g087750.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219082.1.S1_at	A	A1TS	POPTR_0012s11530	POPTR_0012s11530 (11)	scaffold_12:11920662-11921160(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT5G51160.1	Ankyrin repeat family protein 	LOC_Os09g34280.4	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g020870.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219083.1.S1_at	A	A1TS	POPTR_0012s11520	POPTR_0012s11520 (11)	scaffold_12:11917366-11917623(+) (11)	NA	Q6GQ39	Transmembrane protein 135	AT5G51150.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os07g31260.1	expressed protein	Medtr1g087060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219084.1.S1_at	A	A1TS	POPTR_0012s11490	POPTR_0012s11490 (11)	scaffold_12:11899423-11901194(+) (11)	NA	Q8VYB1	Mediator of RNA polymerase II transcription subunit 31	AT5G19910.1	SOH1 family protein 	LOC_Os07g07020.2	"mediator of RNA polymerase II transcription subunit 31, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.219085.1.S1_at	A	A1TS	POPTR_0012s11470	POPTR_0012s11470 (11)	scaffold_12:11889488-11890000(-) (11)	NA	Q6WG30	Taxadiene 5-alpha hydroxylase	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33440.1	"cytochrome P450, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.219087.1.S1_at	A	A2TS	POPTR_0012s11430	POPTR_1330s00210 (11)//POPTR_0012s11430 (11)	scaffold_12:11869926-11870602(+) (11)//scaffold_1330:4778-5454(-) (11)	NA	Q3E6Y3	Uncharacterized protein At1g28695	AT1G28710.3	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os03g52160.1	"regulatory protein, putative, expressed"	Medtr1g064780.1	"Uncharacterized protein At4g15970, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219088.1.S1_s_at	A	A1TS	POPTR_0012s11420	POPTR_0012s11420 (11)	scaffold_12:11862254-11862840(-) (11)//scaffold_12:11877042-11877628(-) (11)	POPTR_0012s11440 (8)	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr2g009030.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.21909.1.S1_at	A	A2TS	POPTR_0006s14860	POPTR_0006s14860 (11)//POPTR_0018s04920 (11)	scaffold_18:4366789-4367137(+) (11)//scaffold_6:12301693-12302049(-) (11)	NA	NA	NA	AT2G19390.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29790.1); Has 203 Blast hits to 188 proteins in 60 species: Archae - 0; Bacteria - 11; Metazoa - 24; Fungi - 34; Plants - 93; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). 	LOC_Os05g28300.1	expressed protein	AC233845_7.1	hypothetical protein AC233845.2 14295-19483 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219093.1.S1_at	A	A1TS	POPTR_0097s00210	POPTR_0097s00210 (11)	scaffold_97:7210-7711(+) (11)	NA	NA	NA	AT3G10480.2	NAC domain containing protein 50 	LOC_Os08g44820.3	"no apical meristem protein, putative, expressed"	Medtr1g065520.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.219094.1.S1_at	A	A2TS	POPTR_0008s01620	POPTR_0008s01620 (11)//POPTR_0162s00260 (10)	scaffold_162:36842-36985(-) (10)//scaffold_8:773592-773727(+) (9)//scaffold_8:788949-789104(+) (11)	NA	NA	NA	AT4G32605.1	Mitochondrial glycoprotein family protein 	LOC_Os01g56460.1	"mitochondrial glycoprotein, putative, expressed"	Medtr5g100350.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
PtpAffx.219097.1.S1_x_at	A	A1MS	POPTR_0014s05480	POPTR_0014s05480 (9)	scaffold_14:4100083-4100470(-) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21910.1.S1_at	A	A1TS	POPTR_0009s16150	POPTR_0009s16150 (11)	scaffold_9:12348588-12349686(+) (11)	NA	Q9ZE28	Uncharacterized protein RP120	AT5G22350.1	Protein of unknown function (DUF1022) 	LOC_Os02g33230.1	"nucleoside-diphosphate-sugar epimerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219105.1.S1_s_at	A	A1TS	POPTR_0003s17430	POPTR_0003s17430 (11)	scaffold_3:16768373-16768422(-) (11)	NA	Q9LHP4	Receptor-like protein kinase 2	AT3G24240.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g04330.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr5g048490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219106.1.S1_at	A	A1MS	POPTR_0022s00740	POPTR_0022s00740 (11)	scaffold_22:353921-354310(-) (11)	NA	Q8S8P6	Pentatricopeptide repeat-containing protein At2g32630	AT2G32630.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g47470.1	"pentatricopeptide, putative"	Medtr1g065910.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219108.1.S1_at	A	A1TS	POPTR_0003s01120	POPTR_0003s01120 (11)	scaffold_3:980775-982913(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219117.1.S1_x_at	A	A1TS	POPTR_0005s01080	POPTR_0005s01080 (11)	scaffold_5:653583-653753(-) (11)	POPTR_0005s01190 (6)	Q9SX38	Putative disease resistance protein At1g50180	AT1G50180.1	NB-ARC domain-containing disease resistance protein 	LOC_Os03g30910.1	"disease resistance protein RPM1, putative, expressed"	Medtr5g028020.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219130.1.S1_at	A	A1TS	POPTR_0011s10130	POPTR_0011s10130 (10)	scaffold_11:12642624-12643369(-) (10)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT1G78520.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os01g14140.1	"X8 domain containing protein, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219131.1.S1_at	A	A1MS	POPTR_0011s10150	POPTR_0011s10150 (11)	scaffold_11:12654682-12654979(+) (11)//scaffold_11:12671842-12671874(+) (9)	NA	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43700.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.219133.1.S1_at	A	A1MS	POPTR_0480s00210	POPTR_0480s00210 (9)	scaffold_11:12672777-12672929(+) (10)//scaffold_480:14501-14653(+) (11)	POPTR_0011s10300 (8)//POPTR_0011s10150 (8)//POPTR_0011s10120 (7)//POPTR_0011s10180 (7)//POPTR_0011s10260 (6)	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43700.2	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219134.1.S1_s_at	A	A1TS	POPTR_0006s07370	POPTR_0006s07370 (11)	scaffold_6:5311436-5312122(-) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.219135.1.S1_at	A	A1TS	POPTR_0006s07370	POPTR_0006s07370 (11)	scaffold_6:5312704-5313387(-) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.219141.1.S1_s_at	A	A1TS	POPTR_0019s04335	POPTR_0019s04335 (11)	scaffold_19:4433084-4433581(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219142.1.S1_at	A	A1MS	POPTR_0131s00230	POPTR_0131s00230 (11)	scaffold_131:54183-54281(-) (11)	POPTR_0011s11840 (8)	Q05047	Secologanin synthase	AT3G14620.1	"cytochrome P450, family 72, subfamily A, polypeptide 8 "	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.219142.1.S1_x_at	A	A2MS	POPTR_0131s00230	POPTR_0131s00230 (11)//POPTR_0011s11840 (9)	scaffold_11:14631803-14632146(-) (9)//scaffold_131:54185-54527(-) (11)	NA	Q05047	Secologanin synthase	AT3G14620.1	"cytochrome P450, family 72, subfamily A, polypeptide 8 "	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.219157.1.S1_at	A	A1TS	POPTR_0013s12570	POPTR_0013s12570 (11)	scaffold_13:13224873-13225457(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219165.1.S1_x_at	A	A1TS	POPTR_0003s19930	POPTR_0003s19930 (11)	scaffold_3:18574485-18574676(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219168.1.S1_at	A	A1MS	POPTR_0025s00310	POPTR_0025s00310 (11)	scaffold_25:99738-100011(+) (11)	NA	NA	NA	AT1G74190.1	receptor like protein 15 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC235756_10.1	Leucine-rich repeat AC235756.1 88514-87135 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.219169.1.S1_at	A	A1TS	POPTR_0019s02160	POPTR_0019s02160 (11)	scaffold_19:1992089-1992328(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219169.1.S1_x_at	A	A1TS	POPTR_0019s02160	POPTR_0019s02160 (11)	scaffold_19:1992089-1992650(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219171.1.S1_at	A	A2TS	POPTR_0019s02090	POPTR_0019s02090 (11)//POPTR_0287s00210 (9)	scaffold_19:1945209-1945989(-) (11)//scaffold_287:16117-16891(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219172.1.S1_at	A	A1TS	POPTR_0019s02070	POPTR_0019s02070 (11)	scaffold_19:1931249-1931472(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.219172.1.S1_x_at	A	A1TS	POPTR_0019s02070	POPTR_0019s02070 (11)	scaffold_19:1931249-1931472(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.219173.1.S1_at	A	A1TS	POPTR_0019s02030	POPTR_0019s02030 (11)	scaffold_19:1889673-1890792(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219174.1.S1_at	A	A1TS	POPTR_0019s02020	POPTR_0019s02020 (11)	scaffold_19:1888793-1888841(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219176.1.S1_at	A	A1TS	POPTR_0007s03320	POPTR_0007s03320 (11)	scaffold_7:1927059-1927642(-) (11)	NA	NA	NA	AT5G64360.4	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g27460.3	"heat shock protein DnaJ, putative, expressed"	Medtr5g075120.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.219179.1.S1_s_at	A	A1TS	POPTR_0015s02060	POPTR_0015s02060 (10)	scaffold_15:1411159-1411422(+) (10)	NA	Q5G1T1	"Pentatricopeptide repeat-containing protein At3g49170, chloroplastic"	AT3G49170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g12130.1	"EMB2261, putative, expressed"	Medtr4g032250.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219180.1.S1_at	A	A1TS	POPTR_0011s08330	POPTR_0011s08330 (11)	scaffold_11:9620352-9622115(-) (11)	NA	P0C8Y0	Camelliol C synthase	AT1G78955.1	camelliol C synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.219187.1.S1_at	A	A1TS	POPTR_0035s00210	POPTR_0035s00210 (11)	scaffold_35:67976-68083(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	NA	NA	Medtr3g109810.1	Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219189.1.S1_at	A	A1MA	POPTR_0035s00210	POPTR_0035s00210 (11)	scaffold_35:71183-71514(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	NA	NA	Medtr3g109810.1	Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219196.1.S1_s_at	A	A5TS	POPTR_0013s08830	POPTR_0013s10710 (11)//POPTR_0013s08830 (11)//POPTR_0013s10730 (11)//POPTR_0013s08880 (11)//POPTR_0013s10640 (11)	scaffold_13:8255358-8257158(-) (11)//scaffold_13:8365935-8366420(-) (11)//scaffold_13:10992358-10992843(-) (11)//scaffold_13:11042888-11043373(-) (11)//scaffold_13:11059083-11059568(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g05800.1	"retrotransposon protein, putative, unclassified"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.219197.1.S1_at	A	A1MS	POPTR_0006s10640	POPTR_0006s10640 (11)	scaffold_6:7968904-7969082(-) (11)	NA	Q9SR82	Putative pentatricopeptide repeat-containing protein At3g08820	AT3G08820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g01836.1	"pentatricopeptide, putative, expressed"	Medtr2g110280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219197.1.S1_s_at	A	A1TS	POPTR_0006s10640	POPTR_0006s10640 (11)	scaffold_6:7968654-7969199(-) (11)	NA	Q9SR82	Putative pentatricopeptide repeat-containing protein At3g08820	AT3G08820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g01836.1	"pentatricopeptide, putative, expressed"	Medtr2g110280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219198.1.S1_at	A	A1TS	POPTR_0006s04480	POPTR_0006s04480 (9)	scaffold_6:3053485-3053749(+) (9)	NA	Q9C9H7	Receptor-like protein 12	AT3G28890.2	receptor like protein 43 	LOC_Os01g06836.1	"disease resistance protein SlVe2 precursor, putative"	Medtr5g094280.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.219201.1.S1_at	A	A2MS	POPTR_0008s01590	POPTR_0008s01590 (10)//POPTR_0162s00290 (10)	scaffold_162:44442-45325(+) (10)//scaffold_8:780787-781676(-) (10)	NA	Q969T7	Cytosolic 5'-nucleotidase III-like protein	AT2G38680.1	5'-nucleotidases;magnesium ion binding 	LOC_Os03g44660.1	"cytosolic 5-nucleotidase III, putative, expressed"	Medtr1g112120.1	HAD-superfamily subfamily IE hydrolase 	NA	GO:0008253|5'-nucleotidase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
PtpAffx.219205.1.S1_at	A	A1TS	POPTR_0011s01360	POPTR_0011s01360 (11)	scaffold_11:937052-937318(-) (11)	NA	NA	NA	AT1G11925.1	Stigma-specific Stig1 family protein 	LOC_Os01g14540.1	"STIGL1 - Stigma-specific Stig1 family protein precursor, expressed"	Medtr2g121900.1	TNFR/CD27/30/40/95 cysteine-rich region; Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219206.1.S1_at	A	A1TS	POPTR_0011s01345	POPTR_0011s01345 (11)	scaffold_11:912774-915430(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219208.1.S1_x_at	A	A1TS	POPTR_0011s01340	POPTR_0011s01340 (11)	scaffold_11:899515-899610(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g14220.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219211.1.S1_at	A	A1TS	POPTR_0011s01290	POPTR_0011s01290 (10)	scaffold_11:817785-819620(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219212.1.S1_x_at	A	A1TS	POPTR_0069s00220	POPTR_0069s00220 (11)	scaffold_69:51332-51804(+) (11)	POPTR_0011s01350 (8)	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.219215.1.S1_at	A	A1TS	POPTR_0012s11740	POPTR_0012s11740 (11)	scaffold_12:12058479-12068105(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219216.1.S1_at	A	A1MA	POPTR_0011s17290	POPTR_0011s17290 (9)	scaffold_11:18883172-18883325(-) (9)//scaffold_12:12067343-12067496(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219216.1.S1_s_at	A	A1TS	POPTR_0012s11740	POPTR_0012s11740 (11)	scaffold_12:12058388-12067567(-) (11)//scaffold_12:12067604-12068179(-) (10)	POPTR_0012s11730 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219217.1.S1_at	A	A1TS	POPTR_0012s11710	POPTR_0012s11710 (11)	scaffold_12:12039480-12039886(+) (11)//scaffold_19:4007397-4014328(-) (10)	POPTR_0019s03930 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219218.1.S1_s_at	A	A1TS	POPTR_0009s02330	POPTR_0009s02330 (11)	scaffold_9:3068911-3077835(-) (11)	NA	Q6ZQ58	La-related protein 1	AT5G21160.1	LA RNA-binding protein 	LOC_Os01g16110.2	"la domain containing protein, putative, expressed"	Medtr5g095250.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219219.1.S1_at	A	A1TS	POPTR_0014s00940	POPTR_0014s00940 (11)	scaffold_14:847097-847834(-) (11)	NA	P23799	Putative adenylate cyclase regulatory protein	AT3G44480.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr3g005680.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.21922.1.A1_at	A	A1TS	POPTR_0004s14680	POPTR_0004s14680 (11)	scaffold_339:955-2131(+) (10)//scaffold_4:15279316-15280422(+) (10)//scaffold_4:15298916-15300378(+) (11)	POPTR_0339s00200 (8)//POPTR_0004s14670 (7)	Q9ZWQ9	Flavonol synthase/flavanone 3-hydroxylase	AT5G08640.2	flavonol synthase 1 	LOC_Os02g52840.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g097910.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.219228.1.S1_at	A	A1TS	POPTR_0002s18880	POPTR_0002s18880 (11)	scaffold_2:14794240-14794703(+) (11)	NA	NA	NA	AT2G47010.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19000.1	expressed protein	Medtr1g105900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219237.1.S1_at	A	A1MS	POPTR_0004s03470	POPTR_0004s03470 (10)	scaffold_4:2397064-2397457(-) (11)	POPTR_0249s00200 (7)	Q42093	ABC transporter C family member 2	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.219238.1.S1_at	A	A1TS	POPTR_0018s12000	POPTR_0018s12000 (11)	scaffold_18:12633573-12633668(+) (11)	NA	Q6RY07	Acidic mammalian chitinase	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain 	LOC_Os11g27400.1	"glycosyl hydrolase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.219239.1.S1_at	A	A1TS	POPTR_0019s12750	POPTR_0019s12750 (9)	scaffold_19:13711599-13712106(+) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.219241.1.S1_at	A	A1TS	POPTR_0009s00250	POPTR_0009s00250 (11)	scaffold_9:73054-73198(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219241.1.S1_x_at	A	A1TS	POPTR_0009s00250	POPTR_0009s00250 (11)	scaffold_9:73054-73214(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219242.1.S1_s_at	A	A1TS	POPTR_0008s22130	POPTR_0008s22130 (11)	scaffold_8:16518406-16518760(-) (11)	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.219247.1.S1_at	A	A1TS	POPTR_0001s45140	POPTR_0001s45140 (11)	scaffold_1:45537254-45537815(+) (11)	POPTR_0065s00210 (6)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219247.1.S1_x_at	A	A1TS	POPTR_0001s45140	POPTR_0001s45140 (11)	scaffold_1:45537254-45537805(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219248.1.S1_x_at	A	A2TS	POPTR_0001s45140	POPTR_0065s00210 (11)//POPTR_0001s45140 (11)	scaffold_1:45535395-45535592(+) (11)//scaffold_65:8962-13328(+) (11)	POPTR_0001s43450 (7)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219251.1.S1_at	A	A1TS	POPTR_0001s43510	POPTR_0001s43510 (11)	scaffold_1:43666383-43666719(-) (11)	NA	Q9FLB4	Putative disease resistance protein At5g05400	AT5G05400.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os09g14010.1	"disease resistance protein RPS2, putative"	Medtr7g105090.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.219262.1.S1_at	A	A2TS	POPTR_0013s03760	POPTR_0013s05960 (11)//POPTR_0013s03760 (11)	scaffold_13:2419562-2419896(-) (11)//scaffold_13:4363398-4363732(-) (11)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.219264.1.S1_at	A	A1TS	POPTR_0004s01150	POPTR_0004s01150 (11)	scaffold_4:616364-616823(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.219265.1.S1_at	A	A1TS	POPTR_0004s01130	POPTR_0004s01130 (10)	scaffold_4:568956-569723(-) (11)	NA	NA	NA	AT1G11800.1	endonuclease/exonuclease/phosphatase family protein 	LOC_Os12g22620.1	"endonuclease/Exonuclease/phosphatase family protein, expressed"	Medtr8g146980.1	"Zinc finger, RanBP2-type; Endonuclease/exonuclease/phosphatase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219266.1.S1_s_at	A	A1TS	POPTR_0004s01100	POPTR_0004s01100 (11)	scaffold_4:547552-548488(-) (11)//scaffold_4:2096411-2096709(+) (10)	NA	A7YWI9	Tyrosyl-DNA phosphodiesterase 2	AT1G11800.1	endonuclease/exonuclease/phosphatase family protein 	LOC_Os12g22620.1	"endonuclease/Exonuclease/phosphatase family protein, expressed"	Medtr8g146980.1	"Zinc finger, RanBP2-type; Endonuclease/exonuclease/phosphatase "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.219267.1.S1_at	A	A1TS	POPTR_0004s03120	POPTR_0004s03120 (11)	scaffold_4:2102671-2102894(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219269.1.S1_at	A	A1TS	POPTR_0004s01100	POPTR_0004s01100 (11)	scaffold_4:547326-547537(-) (11)	NA	A7YWI9	Tyrosyl-DNA phosphodiesterase 2	AT1G11800.1	endonuclease/exonuclease/phosphatase family protein 	LOC_Os12g22620.1	"endonuclease/Exonuclease/phosphatase family protein, expressed"	Medtr8g146980.1	"Zinc finger, RanBP2-type; Endonuclease/exonuclease/phosphatase "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.219270.1.S1_at	A	A1TS	POPTR_0004s01090	POPTR_0004s01090 (10)	scaffold_4:545326-546834(+) (10)	NA	NA	NA	AT1G09890.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr5g075720.1	Galactose-binding like; Rhamnogalacturonate lyase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219271.1.S1_at	A	A1TS	POPTR_0004s01080	POPTR_0004s01080 (11)	scaffold_4:542641-543051(-) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os12g21850.1	"OsMADS73 - MADS-box family gene with M-alpha type-box, expressed"	Medtr2g130230.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.219272.1.S1_at	A	A1TS	POPTR_0004s01060	POPTR_0004s01060 (9)	scaffold_4:531103-531533(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G02060.1	Homeodomain-like superfamily protein 	LOC_Os03g03760.1	"MYB family transcription factor, putative, expressed"	Medtr7g075810.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219274.1.S1_at	A	A1TS	POPTR_0004s01050	POPTR_0004s01050 (11)	scaffold_4:519465-520058(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219275.1.S1_at	A	A1TS	POPTR_0004s01040	POPTR_0004s01040 (11)	scaffold_4:514273-514420(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219278.1.S1_at	A	A1TS	POPTR_1215s00200	POPTR_1215s00200 (11)	scaffold_1215:1724-1979(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G36430.1	Plant protein of unknown function (DUF247) 	LOC_Os11g33430.1	"plant protein of unknown function domain containing protein, expressed"	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219278.1.S1_x_at	A	A1TS	POPTR_1215s00200	POPTR_1215s00200 (11)	scaffold_1215:1724-1992(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G36430.1	Plant protein of unknown function (DUF247) 	LOC_Os11g33430.1	"plant protein of unknown function domain containing protein, expressed"	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219279.1.S1_at	A	A1MS	POPTR_0011s07880	POPTR_0011s07880 (10)	scaffold_11:8783441-8783538(-) (10)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os12g12010.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094030.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.219279.1.S1_x_at	A	A1MS	POPTR_0011s07880	POPTR_0011s07880 (10)	scaffold_11:8783407-8783947(-) (10)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os12g12010.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094030.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.21928.1.S1_at	A	A1TS	POPTR_0008s06590	POPTR_0008s06590 (11)	scaffold_8:3932261-3932752(+) (11)	NA	Q9Y169	Exostosin-2	AT3G55830.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g49150.1	"exostosin, putative, expressed"	Medtr5g089480.1	"EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.219282.1.S1_at	A	A1TS	POPTR_0010s21930	POPTR_0010s21930 (11)	scaffold_10:19033683-19034168(+) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.219282.1.S1_s_at	A	A1TS	POPTR_0010s21930	POPTR_0010s21930 (11)	scaffold_10:19034293-19034846(+) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.219286.1.S1_s_at	A	A1TS	POPTR_0013s13810	POPTR_0013s13810 (11)	scaffold_13:14181687-14181872(-) (11)	NA	Q38944	Probable steroid reductase DET2	AT2G38050.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os01g63260.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr6g041190.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.219292.1.S1_at	A	A1TS	POPTR_0260s00200	POPTR_0260s00200 (10)	scaffold_260:10927-11113(+) (11)	NA	Q04050	NADH-ubiquinone oxidoreductase chain 4	ATMG00580.1	NADH dehydrogenase subunit 4 	NA	NA	Medtr1g005090.1	NADH/Ubiquinone/plastoquinone (complex I) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219293.1.S1_s_at	A	A1TS	POPTR_0003s01245	POPTR_0003s01245 (11)	scaffold_3:1049431-1054324(+) (11)//scaffold_3:1054291-1054329(+) (10)//scaffold_3:1074606-1074644(+) (11)//scaffold_3:1083485-1083523(+) (11)//scaffold_3:1093949-1093987(+) (11)//scaffold_74:25641-25679(-) (11)//scaffold_74:40454-40492(-) (11)//scaffold_74:67793-67831(-) (11)	NA	Q9SZT8	"Pentatricopeptide repeat-containing protein At4g37380, chloroplastic"	AT4G37380.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g13110.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219295.1.S1_s_at	A	A1TS	POPTR_0017s10710	POPTR_0017s10710 (11)	scaffold_17:10204063-10204677(+) (11)	NA	P52425	Glycerol-3-phosphate dehydrogenase [NAD+]	AT5G40610.1	NAD-dependent glycerol-3-phosphate dehydrogenase family protein 	LOC_Os01g74000.1	"glycerol-3-phosphate dehydrogenase, putative, expressed"	Medtr6g022550.1	NAD-dependent glycerol-3-phosphate dehydrogenase 	GO:0044282|small molecule catabolic process||GO:0046168|glycerol-3-phosphate catabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	"GO:0051287|NAD or NADH binding||GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"""	GO:0005737|cytoplasm
PtpAffx.219296.1.S1_at	A	A1TS	POPTR_0005s02910	POPTR_0005s02910 (11)	scaffold_5:1890855-1891733(+) (11)	NA	NA	NA	AT1G09020.1	homolog of yeast sucrose nonfermenting 4 	LOC_Os03g63940.1	"CBS domain containing membrane protein, putative, expressed"	Medtr8g139190.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219298.1.S1_s_at	A	A5TS	POPTR_0005s02900	POPTR_0005s02960 (11)//POPTR_0005s02990 (11)//POPTR_0005s02940 (11)//POPTR_0005s02950 (11)//POPTR_0005s02900 (11)	scaffold_5:1884674-1885056(+) (11)//scaffold_5:1910969-1911351(+) (11)//scaffold_5:1928797-1929179(+) (11)//scaffold_5:1940017-1940399(+) (11)//scaffold_5:1959864-1960246(+) (11)	NA	P37122	Cytochrome P450 76A2	AT3G52970.1	"cytochrome P450, family 76, subfamily G, polypeptide 1 "	LOC_Os10g08540.1	"cytochrome P450, putative, expressed"	Medtr1g147240.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.219299.1.S1_at	A	A1TS	POPTR_0005s03000	POPTR_0005s03000 (11)	scaffold_5:1969410-1969709(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219300.1.S1_x_at	A	A1TS	POPTR_0005s03020	POPTR_0005s03020 (11)	scaffold_5:1978033-1978722(-) (11)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219303.1.S1_at	A	A1TS	POPTR_0005s03050	POPTR_0005s03050 (11)	scaffold_5:1994018-1994346(-) (11)	NA	NA	NA	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	NA	NA	Medtr1g099520.1	"Kinesin, motor region "	NA	GO:0005515|protein binding	NA
PtpAffx.219304.1.S1_s_at	A	A4TS	POPTR_0005s03060	POPTR_0005s03430 (10)//POPTR_0005s03060 (10)//POPTR_0005s03130 (10)//POPTR_0005s03470 (10)	scaffold_5:1997622-1997699(-) (10)//scaffold_5:1998388-1998465(-) (10)//scaffold_5:2061197-2061274(-) (10)//scaffold_5:2246004-2246081(-) (10)//scaffold_5:2318753-2318830(-) (10)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12440.1	"receptor kinase, putative, expressed"	Medtr6g038640.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.219306.1.S1_s_at	A	A4TS	POPTR_0005s03060	POPTR_0005s03430 (11)//POPTR_0005s03060 (11)//POPTR_0005s03130 (11)//POPTR_0005s03470 (11)	scaffold_5:1997424-1997468(-) (11)//scaffold_5:1998199-1998238(-) (9)//scaffold_5:2061002-2061046(-) (11)//scaffold_5:2245809-2245853(-) (11)//scaffold_5:2318558-2318602(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12440.1	"receptor kinase, putative, expressed"	Medtr6g038640.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.219307.1.S1_at	A	A1TS	POPTR_0005s03070	POPTR_0005s03070 (9)	scaffold_5:2000901-2001017(-) (9)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.219312.1.S1_at	A	A1TS	POPTR_0127s00201	POPTR_0127s00201 (11)	scaffold_127:13176-17667(-) (11)	NA	Q9XFB0	Putative axial regulator YABBY 2	AT1G08465.1	Plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr2g104680.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219313.1.S1_at	A	A1TS	POPTR_0009s00535	POPTR_0009s00535 (11)	scaffold_9:411471-412582(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219315.1.S1_at	A	A1TS	POPTR_1651s00200	POPTR_1651s00200 (10)	scaffold_1651:1587-1621(-) (10)//scaffold_7:2283290-2283323(-) (9)	NA	NA	NA	NA	NA	LOC_Os12g08850.1	expressed protein	Medtr4g142640.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219317.1.S1_at	A	A1TS	POPTR_0019s07840	POPTR_0019s07840 (11)	scaffold_19:9068580-9069375(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT3G07070.1	Protein kinase superfamily protein 	LOC_Os05g30870.2	"protein kinase domain containing protein, expressed"	Medtr7g143330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219318.1.S1_at	A	A1TS	POPTR_0019s07840	POPTR_0019s07840 (11)	scaffold_19:9067719-9068267(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT3G07070.1	Protein kinase superfamily protein 	LOC_Os05g30870.2	"protein kinase domain containing protein, expressed"	Medtr7g143330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219319.1.S1_at	A	A1TS	POPTR_0019s07830	POPTR_0019s07830 (11)	scaffold_19:9059587-9061313(+) (11)	NA	Q9DBY1	E3 ubiquitin-protein ligase synoviolin	AT3G16090.1	RING/U-box superfamily protein 	LOC_Os06g19680.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g007790.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219319.1.S1_s_at	A	A2TS	POPTR_0013s09710	POPTR_0013s09710 (11)//POPTR_0019s07830 (11)	scaffold_13:9652088-9652429(-) (11)//scaffold_19:9059515-9059859(+) (11)	NA	Q9DBY1	E3 ubiquitin-protein ligase synoviolin	AT3G16090.1	RING/U-box superfamily protein 	LOC_Os06g19680.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g007790.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219321.1.S1_s_at	A	A4TS	POPTR_0018s00450	POPTR_0018s00460 (11)//POPTR_0018s00450 (11)//POPTR_0018s00480 (11)//POPTR_0018s00470 (11)	scaffold_18:372097-372526(+) (11)//scaffold_18:390895-391324(+) (11)//scaffold_18:411864-412293(+) (11)//scaffold_18:431090-431519(+) (11)	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr2g122680.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.219326.1.S1_s_at	A	A1TS	POPTR_0012s13420	POPTR_0012s13420 (11)	scaffold_12:13583762-13584225(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G07280.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os01g68870.2	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219330.1.S1_at	A	A3MS	POPTR_0011s06200	POPTR_0011s06360 (9)//POPTR_0011s06290 (9)//POPTR_0011s06200 (9)	scaffold_11:6285281-6287236(-) (9)//scaffold_11:6475572-6479605(-) (9)//scaffold_11:6579675-6581612(-) (9)	POPTR_0122s00210 (7)//POPTR_0011s06240 (6)	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os05g17050.1	"transposon protein, putative, CACTA, En/Spm sub-class"	Medtr4g136230.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219331.1.S1_s_at	A	A11TS	POPTR_0011s03200	POPTR_0011s06540 (9)//POPTR_0011s06450 (9)//POPTR_0011s06500 (9)//POPTR_0011s06380 (9)//POPTR_0011s06140 (9)//POPTR_0011s06690 (9)//POPTR_0011s06270 (9)//POPTR_0011s06350 (9)//POPTR_0011s06230 (9)//POPTR_0011s06470 (9)//POPTR_0011s03200 (9)	scaffold_11:3330902-3330938(-) (9)//scaffold_11:6223790-6223826(-) (9)//scaffold_11:6359650-6359686(-) (9)//scaffold_11:6464953-6464989(-) (9)//scaffold_11:6568944-6568980(-) (9)//scaffold_11:6643710-6643746(-) (9)//scaffold_11:6829176-6829212(-) (9)//scaffold_11:6871582-6871618(-) (9)//scaffold_11:6973473-6973509(-) (9)//scaffold_11:7012260-7012296(-) (9)//scaffold_11:7120076-7120112(-) (9)//scaffold_11:7175085-7175121(-) (9)//scaffold_11:7179968-7180004(-) (9)//scaffold_11:7294299-7294335(-) (9)	POPTR_0122s00200 (6)	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219332.1.S1_x_at	A	A1TS	POPTR_0011s06260	POPTR_0011s06260 (11)	scaffold_11:6447917-6448188(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219336.1.S1_at	A	A1TS	POPTR_0018s12550	POPTR_0018s12550 (11)	scaffold_18:13116281-13118384(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219343.1.S1_at	A	A1TS	POPTR_0010s21530	POPTR_0010s21530 (11)	scaffold_10:18773990-18774495(+) (11)	NA	NA	NA	AT2G39580.1	CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os12g37890.1	expressed protein	Medtr7g025350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219344.1.S1_at	A	A1TS	POPTR_0010s21520	POPTR_0010s21520 (11)	scaffold_10:18764038-18764357(-) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT3G29635.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g28300.1	"transferase family protein, putative"	Medtr7g073580.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.219345.1.S1_at	A	A1TS	POPTR_0010s21200	POPTR_0010s21200 (11)	scaffold_10:18573778-18574241(-) (11)	NA	Q8K339	DNA/RNA-binding protein KIN17	AT1G55460.1	"DNA/RNA-binding protein Kin17, conserved region "	LOC_Os03g37330.1	"KIN, antigenic determinant of recA protein, putative, expressed"	Medtr5g099450.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219345.1.S1_s_at	A	A1TS	POPTR_0010s21200	POPTR_0010s21200 (11)	scaffold_10:18573827-18574133(-) (11)	NA	Q8K339	DNA/RNA-binding protein KIN17	AT1G55460.1	"DNA/RNA-binding protein Kin17, conserved region "	LOC_Os03g37330.1	"KIN, antigenic determinant of recA protein, putative, expressed"	Medtr5g099450.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219346.1.S1_at	A	A1TS	POPTR_0010s21250	POPTR_0010s21250 (11)	scaffold_10:18609785-18609912(+) (11)	NA	O65719	Heat shock cognate 70 kDa protein 3	AT3G09440.2	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os03g60620.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219346.1.S1_s_at	A	A1TS	POPTR_0010s21250	POPTR_0010s21250 (11)	scaffold_10:18609468-18609722(+) (11)	NA	O65719	Heat shock cognate 70 kDa protein 3	AT3G09440.2	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os03g60620.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219348.1.S1_at	A	A1TS	POPTR_0010s21290	POPTR_0010s21290 (11)	scaffold_10:18634902-18635631(-) (11)	NA	NA	NA	AT3G04020.1	unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g16870.2	expressed protein	Medtr7g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219348.1.S1_x_at	A	A1TS	POPTR_0010s21290	POPTR_0010s21290 (11)	scaffold_10:18634673-18635631(-) (11)	NA	NA	NA	AT3G04020.1	unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g16870.2	expressed protein	Medtr7g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219353.1.S1_at	A	A1MS	POPTR_0010s21250	POPTR_0010s21250 (10)	scaffold_10:18609314-18609835(+) (10)	NA	O65719	Heat shock cognate 70 kDa protein 3	AT3G09440.2	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os03g60620.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219359.1.S1_at	A	A1TS	POPTR_0011s06470	POPTR_0011s06470 (11)	scaffold_11:6871491-6872075(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.219359.1.S1_x_at	A	A1TS	POPTR_0011s06470	POPTR_0011s06470 (11)	scaffold_11:6871466-6872075(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.219360.1.S1_a_at	A	A1TS	POPTR_0011s06390	POPTR_0011s06390 (11)	scaffold_11:6645963-6646004(+) (11)//scaffold_11:6645999-6646040(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219360.1.S1_at	A	A1TS	POPTR_0011s06390	POPTR_0011s06390 (11)	scaffold_11:6645280-6645973(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21937.1.A1_at	A	A1TS	POPTR_0005s20300	POPTR_0005s20300 (11)	scaffold_5:19350722-19351095(+) (11)	NA	Q9XI07	SWI/SNF complex subunit SWI3C	AT1G21700.1	SWITCH/sucrose nonfermenting 3C 	LOC_Os11g08080.1	"SWIRM domain containing protein, expressed"	Medtr3g100590.1	SWIRM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219372.1.S1_at	A	A1TS	POPTR_0003s15120	POPTR_0003s15120 (11)	scaffold_3:14992091-14992196(+) (11)	NA	Q9C8Z4	Uncharacterized protein At3g06530	AT3G06530.2	ARM repeat superfamily protein 	LOC_Os04g46310.1	"HEAT repeat family protein, putative, expressed"	Medtr5g099720.1	"BP28, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219373.1.S1_at	A	A1TA	POPTR_0003s15140	POPTR_0003s15140 (10)	scaffold_3:15002742-15003096(-) (11)	NA	Q38890	Endoglucanase 25	AT5G49720.1	glycosyl hydrolase 9A1 	LOC_Os03g21210.1	"endoglucanase, putative, expressed"	Medtr2g034060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.219374.1.S1_at	A	A1TS	POPTR_0745s00200	POPTR_0745s00200 (11)	scaffold_3:15015057-15015776(-) (10)//scaffold_745:381-1164(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219377.1.S1_s_at	A	A3TS	POPTR_0003s22150	POPTR_0003s22150 (11)//POPTR_0003s22200 (11)//POPTR_0108s00250 (11)	scaffold_108:41313-41735(+) (11)//scaffold_3:20059627-20060049(-) (11)//scaffold_3:20078193-20078615(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219380.1.S1_x_at	A	A1TS	POPTR_0017s01620	POPTR_0017s01620 (11)	scaffold_17:1156015-1156466(+) (11)	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219388.1.S1_at	A	A1TS	POPTR_0004s01230	POPTR_0004s01230 (10)	scaffold_4:674412-675119(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219399.1.S1_at	A	A1TS	POPTR_0008s18290	POPTR_0008s18290 (11)	scaffold_8:12247549-12247627(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219399.1.S1_s_at	A	A1TS	POPTR_0008s18290	POPTR_0008s18290 (11)	scaffold_8:12247621-12247938(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219401.1.S1_at	A	A1TS	POPTR_0005s01300	POPTR_0005s01300 (11)	scaffold_5:845018-845652(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT5G62230.2	ERECTA-like 1 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr3g166710.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.219402.1.S1_x_at	A	A1TS	POPTR_0005s00960	POPTR_0005s00960 (11)	scaffold_5:458104-458608(-) (11)	POPTR_0005s01160 (8)//POPTR_0005s01120 (6)	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028010.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.219403.1.S1_at	A	A1TS	POPTR_0005s00950	POPTR_0005s00950 (11)	scaffold_5:452051-452086(-) (11)	POPTR_0005s01310 (8)//POPTR_0005s01000 (7)//POPTR_0005s01230 (7)	Q42371	LRR receptor-like serine/threonine-protein kinase ERECTA	AT1G74170.1	receptor like protein 13 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166620.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.219403.1.S1_s_at	A	A9TS	POPTR_0005s00950	POPTR_0005s01640 (11)//POPTR_0056s00220 (11)//POPTR_0005s01610 (11)//POPTR_0005s01310 (11)//POPTR_0005s01500 (11)//POPTR_0047s00250 (11)//POPTR_0005s00950 (11)//POPTR_0005s01000 (11)//POPTR_0005s01230 (11)	scaffold_1122:1415-1699(+) (9)//scaffold_47:79565-79852(-) (11)//scaffold_5:451919-452203(-) (11)//scaffold_5:524521-524805(-) (11)//scaffold_5:773732-774016(-) (11)//scaffold_5:858334-858618(-) (11)//scaffold_5:986750-987034(-) (11)//scaffold_5:1058508-1058792(+) (11)//scaffold_5:1093425-1093709(+) (11)//scaffold_56:14117-14401(+) (11)	NA	Q42371	LRR receptor-like serine/threonine-protein kinase ERECTA	AT1G74170.1	receptor like protein 13 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166620.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.219404.1.S1_at	A	A1MS	POPTR_0005s00940	POPTR_0005s00940 (9)	scaffold_5:447966-448579(-) (9)	NA	Q9C9H7	Receptor-like protein 12	AT1G58190.2	receptor like protein 9 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.219405.1.S1_at	A	A1TS	POPTR_0005s00930	POPTR_0005s00930 (11)	scaffold_5:440245-440281(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219405.1.S1_s_at	A	A2TS	POPTR_0005s00930	POPTR_0005s01330 (11)//POPTR_0005s00930 (11)	scaffold_5:440019-440147(-) (11)//scaffold_5:881333-881458(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219405.1.S1_x_at	A	A1TS	POPTR_0005s00930	POPTR_0005s00930 (11)	scaffold_5:440037-440311(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219412.1.S1_at	A	A1TS	POPTR_0019s04800	POPTR_0019s04800 (11)	scaffold_19:5013142-5013362(-) (11)	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT5G56350.1	Pyruvate kinase family protein 	LOC_Os01g16960.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.219412.1.S1_s_at	A	A2TS	POPTR_0013s05690	POPTR_0019s04800 (11)//POPTR_0013s05690 (11)	scaffold_13:4104032-4104492(+) (11)//scaffold_19:5012668-5013195(-) (11)	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT5G56350.1	Pyruvate kinase family protein 	LOC_Os01g16960.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.219412.1.S1_x_at	A	A1TS	POPTR_0019s04800	POPTR_0019s04800 (11)	scaffold_19:5013142-5013458(-) (11)	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT5G56350.1	Pyruvate kinase family protein 	LOC_Os01g16960.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.219419.1.S1_s_at	A	A1TS	POPTR_0006s26140	POPTR_0006s26140 (11)	scaffold_242:22771-22926(+) (11)//scaffold_6:24424902-24425057(+) (11)	POPTR_0242s00230 (7)	P92960	Potassium channel KAT3	AT4G32650.3	potassium channel in Arabidopsis thaliana 3 	LOC_Os01g52070.1	"potassium channel AKT1, putative, expressed"	Medtr3g135850.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.219421.1.S1_at	A	A2TS	POPTR_0006s17640	POPTR_0006s17640 (11)//POPTR_0024s00235 (10)	scaffold_24:56497-56825(-) (10)//scaffold_6:15714281-15714609(+) (11)//scaffold_6:15721334-15721662(+) (9)	POPTR_0006s17650 (6)	NA	NA	NA	NA	NA	NA	Medtr4g159560.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219422.1.S1_at	A	A1TS	POPTR_0006s17660	POPTR_0006s17660 (11)	scaffold_6:15735948-15736393(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g06710.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219423.1.S1_at	A	A1TS	POPTR_0024s00230	POPTR_0024s00230 (11)	scaffold_24:37502-37901(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g105410.1	Retrotransposon gag protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219425.1.S1_at	A	A1TS	POPTR_0024s00200	POPTR_0024s00200 (11)	scaffold_24:11630-11989(-) (11)	NA	NA	NA	NA	NA	LOC_Os05g13730.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219443.1.S1_at	A	A1TS	POPTR_0014s00440	POPTR_0014s00440 (9)	scaffold_14:321855-323335(-) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g019390.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219444.1.S1_at	A	A1TS	POPTR_0014s00450	POPTR_0014s00450 (11)	scaffold_14:367232-367802(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219444.1.S1_x_at	A	A1TS	POPTR_0014s00450	POPTR_0014s00450 (11)	scaffold_14:367232-367802(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219445.1.S1_s_at	A	A2TS	POPTR_0014s00460	POPTR_0014s00460 (11)//POPTR_0014s01160 (11)	scaffold_14:371589-371779(+) (11)//scaffold_14:1111598-1111791(-) (11)	NA	NA	NA	AT1G16770.1	unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g04780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219446.1.S1_at	A	A2TS	POPTR_0014s00470	POPTR_0014s00470 (11)//POPTR_0014s01120 (10)	scaffold_14:377782-378043(+) (11)//scaffold_14:543255-543516(+) (10)//scaffold_14:1046306-1046567(-) (10)//scaffold_14:1149337-1149598(-) (10)	POPTR_0014s01170 (8)	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219446.1.S1_x_at	A	A2TS	POPTR_0014s00470	POPTR_0014s00470 (10)//POPTR_0014s01120 (9)	scaffold_14:377740-378057(+) (11)//scaffold_14:543238-543530(+) (9)//scaffold_14:1046292-1046584(-) (9)//scaffold_14:1149323-1149615(-) (9)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219447.1.S1_s_at	A	A1TS	POPTR_0005s07680	POPTR_0005s07680 (11)	scaffold_5:5261494-5262480(-) (11)	NA	O80501	Ras-related protein RABH1B	AT5G10260.1	RAB GTPase homolog H1E 	LOC_Os07g31370.1	"ras-related protein, putative, expressed"	Medtr5g014080.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.21945.1.A1_at	A	A1TS	POPTR_0002s23080	POPTR_0002s23080 (11)	scaffold_2:20449652-20450750(-) (11)	NA	Q94C37	Homeobox-leucine zipper protein HDG2	AT1G05230.4	homeodomain GLABROUS 2 	LOC_Os04g53540.3	"homeobox and START domains containing protein, putative, expressed"	Medtr2g103900.2	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.219450.1.S1_at	A	A1TS	POPTR_0009s15580	POPTR_0009s15580 (11)	scaffold_9:12011229-12011267(+) (11)	NA	Q7G192	Aldehyde oxidase 2	AT3G43600.1	aldehyde oxidase 2 	LOC_Os07g18120.1	"aldehyde oxidase, putative, expressed"	Medtr5g094490.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0051536|iron-sulfur cluster binding||GO:0046872|metal ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.219450.1.S1_s_at	A	A1TS	POPTR_0009s15580	POPTR_0009s15580 (11)	scaffold_9:11999993-12003036(+) (11)//scaffold_9:12011258-12012805(+) (11)	POPTR_0009s15560 (8)	Q7G192	Aldehyde oxidase 2	AT3G43600.1	aldehyde oxidase 2 	LOC_Os07g18120.1	"aldehyde oxidase, putative, expressed"	Medtr5g094490.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0051536|iron-sulfur cluster binding||GO:0046872|metal ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.219456.1.S1_at	A	A1MS	POPTR_0014s10320	POPTR_0014s10320 (9)	scaffold_14:7747546-7747597(-) (9)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.219456.1.S1_s_at	A	A1TS	POPTR_0014s10320	POPTR_0014s10320 (11)	scaffold_14:7747766-7748133(-) (11)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.21946.1.A1_a_at	A	A1TS	POPTR_0002s05620	POPTR_0002s05620 (11)	scaffold_2:3685161-3685280(-) (11)	NA	Q9LYT1	Polyamine oxidase 3	AT3G59050.1	polyamine oxidase 3 	LOC_Os04g53190.2	"CPuORF12 - conserved peptide uORF-containing transcript, expressed"	Medtr5g097430.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.219460.1.S1_at	A	A1MS	POPTR_0010s16440	POPTR_0010s16440 (11)	scaffold_10:15407807-15407927(+) (11)	NA	O48845	Probable cytochrome b5 isoform 2	AT1G26340.1	cytochrome B5 isoform A 	LOC_Os05g01820.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr5g048270.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.219460.1.S1_x_at	A	A1MS	POPTR_0010s16440	POPTR_0010s16440 (11)	scaffold_10:15407727-15407927(+) (11)	NA	O48845	Probable cytochrome b5 isoform 2	AT1G26340.1	cytochrome B5 isoform A 	LOC_Os05g01820.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr5g048270.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.219464.1.S1_at	A	A1TS	POPTR_0001s43470	POPTR_0001s43470 (10)	scaffold_1:43555551-43555892(+) (10)	NA	Q42484	Disease resistance protein RPS2	AT4G26090.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219466.1.S1_x_at	A	A1TS	POPTR_0001s43450	POPTR_0001s43450 (11)	scaffold_1:43532367-43532651(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219467.1.S1_at	A	A1TS	POPTR_0001s43460	POPTR_0001s43460 (10)	scaffold_1:43535923-43536511(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	NA	GO:0005515|protein binding	NA
PtpAffx.219469.1.S1_s_at	A	A1TS	POPTR_0016s04020	POPTR_0016s04020 (9)	scaffold_16:2279577-2280391(-) (11)	NA	Q84TJ0	Probable methyltransferase PMT6	AT3G10200.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g31480.2	"methyltransferase, putative, expressed"	Medtr1g090480.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219471.1.S1_s_at	A	A2TS	POPTR_0003s02140	POPTR_0003s02140 (11)//POPTR_0003s02320 (11)	scaffold_3:2255521-2255649(+) (11)//scaffold_3:2399117-2399245(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219474.1.S1_at	A	A1TS	POPTR_0008s15790	POPTR_0008s15790 (11)	scaffold_8:10517917-10518080(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219482.1.S1_at	A	A1TS	POPTR_0010s08190	POPTR_0010s08190 (11)	scaffold_10:9129559-9130245(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219483.1.S1_at	A	A1TS	POPTR_0010s08220	POPTR_0010s08220 (11)	scaffold_10:9154840-9155521(+) (11)	NA	Q9C6P3	Calcium-dependent protein kinase 33	AT1G08650.1	phosphoenolpyruvate carboxylase kinase 1 	LOC_Os02g56310.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g093530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219484.1.S1_s_at	A	A3TS	POPTR_0010s08240	POPTR_0010s08240 (11)//POPTR_0010s08270 (11)//POPTR_0010s08250 (11)	scaffold_10:9182790-9183182(-) (11)//scaffold_10:9195594-9195986(-) (11)//scaffold_10:9224446-9224838(-) (11)	NA	Q96303	Inorganic phosphate transporter 1-4	AT2G38940.1	phosphate transporter 1;4 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.219485.1.S1_s_at	A	A1TS	POPTR_0010s08250	POPTR_0010s08250 (11)	scaffold_10:9182479-9182741(-) (11)//scaffold_10:9195283-9195545(-) (11)	NA	Q96303	Inorganic phosphate transporter 1-4	AT2G38940.1	phosphate transporter 1;4 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.219498.1.S1_s_at	A	A4TS	POPTR_0001s39390	POPTR_0001s39420 (11)//POPTR_0001s39450 (11)//POPTR_0001s39390 (11)//POPTR_0084s00240 (11)	scaffold_1:38555653-38556338(+) (11)//scaffold_1:38595596-38596281(+) (11)//scaffold_1:38627516-38628201(+) (11)//scaffold_84:46593-47278(+) (11)	POPTR_0001s39490 (8)	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219500.1.S1_at	A	A1TS	POPTR_0001s39430	POPTR_0001s39430 (10)	scaffold_1:38599159-38599479(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219501.1.S1_at	A	A5TS	POPTR_0001s39390	POPTR_0001s39420 (11)//POPTR_0001s39390 (11)//POPTR_0084s00240 (11)//POPTR_0001s39490 (10)//POPTR_0001s39450 (10)	scaffold_1:38557114-38557739(+) (11)//scaffold_1:38597092-38597745(+) (11)//scaffold_1:38629016-38629651(+) (10)//scaffold_1:38686304-38686948(+) (10)//scaffold_84:48084-48712(+) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219504.1.S1_at	A	A1TS	POPTR_0001s39360	POPTR_0001s39360 (11)	scaffold_1:38523250-38523391(-) (11)	POPTR_0001s39320 (8)//POPTR_0084s00200 (8)	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219505.1.S1_at	A	A1TS	POPTR_0001s39330	POPTR_0001s39330 (11)	scaffold_1:38518365-38518698(+) (11)//scaffold_18:4566976-4567312(-) (11)	POPTR_0018s05100 (7)	Q9ZUN3	K(+) efflux antiporter 4	AT2G19600.1	K+ efflux antiporter 4 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr1g020600.1	Sodium/hydrogen exchanger 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219510.1.S1_at	A	A1TS	POPTR_0005s25750	POPTR_0005s25750 (11)	scaffold_5:23954044-23954154(+) (11)	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219510.1.S1_s_at	A	A1TS	POPTR_0005s25750	POPTR_0005s25750 (11)	scaffold_5:23953598-23954042(+) (11)	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219511.1.S1_at	A	A1TS	POPTR_0017s13040	POPTR_0017s13040 (11)	scaffold_17:13197402-13197858(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39080.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g57480.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.219523.1.S1_at	A	A1TS	POPTR_0012s06290	POPTR_0012s06290 (11)	scaffold_12:6576376-6576595(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219536.1.S1_s_at	A	A3TS	POPTR_0017s13130	POPTR_0017s13130 (11)//POPTR_0125s00210 (11)//POPTR_0017s13170 (11)	scaffold_125:36442-36753(-) (11)//scaffold_17:13290068-13290379(+) (11)//scaffold_17:13350855-13351168(+) (11)//scaffold_554:3-267(-) (10)	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os03g21540.1	"TKL_IRAK_CrRLK1L-1.8 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219538.1.S1_at	A	A1TS	POPTR_0017s13160	POPTR_0017s13160 (11)	scaffold_17:13344483-13344737(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g21540.1	"TKL_IRAK_CrRLK1L-1.8 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr5g049220.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219539.1.S1_at	A	A1MS	POPTR_0017s13080	POPTR_0017s13080 (9)	scaffold_17:13253402-13254439(+) (9)	NA	Q9FVW3	Probable esterase At1g33990	AT3G29770.1	methyl esterase 11 	LOC_Os07g41230.1	"esterase, putative, expressed"	Medtr3g012890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219544.1.S1_s_at	A	A2TS	POPTR_0001s03690	POPTR_0001s03690 (11)//POPTR_0137s00230 (10)	scaffold_1:2971082-2971585(-) (11)//scaffold_137:46476-46979(-) (11)	POPTR_0137s00210 (8)	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028050.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219549.1.S1_at	A	A1MS	POPTR_0009s12050	POPTR_0009s12050 (10)	scaffold_9:9903977-9904011(-) (10)	NA	Q9ZPV9	Syntaxin-112	AT2G18260.1	syntaxin of plants 112 	LOC_Os03g52650.1	"syntaxin-related protein, putative, expressed"	Medtr5g020560.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
PtpAffx.219552.1.S1_at	A	A1TS	POPTR_0004s12730	POPTR_0004s12730 (10)	scaffold_4:11992064-11992578(+) (11)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219552.1.S1_x_at	A	A1TS	POPTR_0004s12730	POPTR_0004s12730 (10)	scaffold_4:11992064-11992578(+) (11)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219562.1.S1_s_at	A	A1TS	POPTR_0019s02150	POPTR_0019s02150 (11)	scaffold_19:1984780-1985203(-) (11)	POPTR_0060s00250 (6)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.219563.1.S1_x_at	A	A1TS	POPTR_0048s00275	POPTR_0048s00275 (11)	scaffold_17:4295107-4295269(+) (10)//scaffold_48:162726-162889(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g148000.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219564.1.S1_s_at	A	A1TS	POPTR_0017s05410	POPTR_0017s05410 (11)	scaffold_17:4289800-4289960(+) (11)	NA	NA	NA	AT2G15490.1	UDP-glycosyltransferase 73B4 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21957.1.A1_at	A	A1TS	POPTR_0014s03910	POPTR_0014s03910 (11)	scaffold_14:3120282-3120961(-) (11)	NA	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570	AT1G13570.1	F-box/RNI-like superfamily protein 	LOC_Os02g33400.1	"OsFBL9 - F-box domain and LRR containing protein, expressed"	Medtr1g025860.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219576.1.S1_at	A	A1TS	POPTR_0019s02190	POPTR_0019s02190 (11)	scaffold_19:2046376-2046777(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.219586.1.S1_s_at	A	A1TS	POPTR_0008s18700	POPTR_0008s18700 (11)	scaffold_8:12689972-12690028(-) (11)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.219589.1.S1_at	A	A1TS	POPTR_0008s18690	POPTR_0008s18690 (11)	scaffold_8:12684716-12685352(-) (11)	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219590.1.S1_s_at	A	A1TS	POPTR_0008s18630	POPTR_0008s18630 (11)	scaffold_8:12558362-12558861(+) (11)	POPTR_0008s18670 (8)	NA	NA	AT1G58190.1	receptor like protein 9 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC235756_10.1	Leucine-rich repeat AC235756.1 88514-87135 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219592.1.S1_at	A	A1TS	POPTR_0008s18620	POPTR_0008s18620 (9)	scaffold_8:12556194-12557676(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219594.1.S1_at	A	A1TS	POPTR_0008s18650	POPTR_0008s18650 (11)	scaffold_8:12400076-12400457(-) (9)//scaffold_8:12594180-12599181(-) (11)//scaffold_8:12715961-12716342(-) (9)	NA	Q2MY58	Patatin group A-3	AT4G37070.1	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr5g017680.1	"Patatin; Serine/threonine protein kinase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219602.1.S1_s_at	A	A1TS	POPTR_0672s00200	POPTR_0672s00200 (11)	scaffold_672:3779-4032(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12440.1	"receptor kinase, putative, expressed"	Medtr3g093270.1	Protein kinase; ; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219626.1.S1_at	A	A1TS	POPTR_0003s20150	POPTR_0003s20150 (11)	scaffold_3:18726406-18726639(+) (11)	NA	P90648	Myosin heavy chain kinase B	AT3G51930.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g71780.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g071030.1	Myristoyl-CoA:protein N-myristoyltransferase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219631.1.S1_at	A	A1TS	POPTR_0008s16290	POPTR_0008s16290 (11)	scaffold_8:10920442-10920497(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219631.1.S1_x_at	A	A1TS	POPTR_0008s16290	POPTR_0008s16290 (11)	scaffold_8:10920305-10920497(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219632.1.S1_at	A	A1TS	POPTR_0008s16280	POPTR_0008s16280 (11)	scaffold_8:10914141-10914379(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219638.1.S1_at	A	A1TS	POPTR_0006s15640	POPTR_0006s15640 (11)	scaffold_6:13091236-13091771(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219639.1.S1_at	A	A1TS	POPTR_0006s15660	POPTR_0006s15660 (11)	scaffold_6:13122887-13123051(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219640.1.S1_at	A	A1TS	POPTR_0006s15670	POPTR_0006s15670 (11)	scaffold_6:13139994-13141586(-) (11)	NA	Q84WU9	Zinc finger CCCH domain-containing protein 64	AT5G56900.2	CwfJ-like family protein / zinc finger (CCCH-type) family protein 	LOC_Os09g19940.1	"cwfJ-like family protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.219644.1.S1_at	A	A1TS	POPTR_0003s01080	POPTR_0003s01080 (11)	scaffold_3:948036-948131(-) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT4G20020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast hits to 16023 proteins in 1033 species: Archae - 4; Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants - 3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI BLink). 	LOC_Os11g11020.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g006280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21966.1.A1_at	A	A1TS	POPTR_0006s01490	POPTR_0006s01490 (11)	scaffold_6:897766-898175(+) (11)	NA	Q8LG88	Tonoplast dicarboxylate transporter	AT5G47560.1	tonoplast dicarboxylate transporter 	LOC_Os09g31130.1	"citrate transporter, putative, expressed"	Medtr8g147910.1	Sodium/sulphate symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219664.1.S1_s_at	A	A1TS	POPTR_1161s00200	POPTR_1161s00200 (11)	scaffold_1161:1405-2149(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219673.1.S1_at	A	A1TS	POPTR_0019s04460	POPTR_0019s04460 (10)	scaffold_19:4611136-4611605(+) (11)	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219684.1.S1_at	A	A1TS	POPTR_0006s14640	POPTR_0006s14640 (11)	scaffold_6:11990996-11991916(-) (11)	NA	Q9LYG9	Uncharacterized protein At5g12080	AT5G12080.3	mechanosensitive channel of small conductance-like 10 	LOC_Os06g10410.1	"uncharacterized mscS family protein, putative, expressed"	Medtr3g139330.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.219685.1.S1_at	A	A1MS	POPTR_0006s14620	POPTR_0006s14620 (11)	scaffold_6:11988914-11989306(+) (11)	NA	Q6NY74	Replication protein A 70 kDa DNA-binding subunit	AT2G06510.2	replication protein A 1A 	LOC_Os02g53680.1	"RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr3g061820.1	"Replication factor-A protein 1, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219686.1.S1_at	A	A1TS	POPTR_0006s14600	POPTR_0006s14600 (11)	scaffold_6:11924765-11925419(-) (11)	NA	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43774.1	"cytochrome P450 72A1, putative, expressed"	Medtr8g045120.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219687.1.S1_at	A	A2TS	POPTR_0006s14590	POPTR_0006s14590 (11)//POPTR_0005s12820 (10)	scaffold_5:9641874-9643080(-) (10)//scaffold_6:11922837-11924358(+) (11)	NA	NA	NA	AT5G09380.1	RNA polymerase III RPC4 	LOC_Os04g32350.1	"RNA polymerase III RPC4 domain containing protein, expressed"	Medtr1g093720.1	RNA polymerase III RPC4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006383|transcription from RNA polymerase III promoter	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005666|DNA-directed RNA polymerase III complex
PtpAffx.219688.1.S1_at	A	A1TS	POPTR_0006s14570	POPTR_0006s14570 (11)	scaffold_6:11900620-11900880(-) (11)	NA	Q6PD62	RNA polymerase-associated protein CTR9 homolog	AT2G06210.1	binding 	LOC_Os07g29360.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219689.1.S1_at	A	A1TS	POPTR_0006s14550	POPTR_0006s14550 (11)	scaffold_6:11883892-11884043(+) (11)	NA	Q6NXD8	DENN domain-containing protein 5B	AT5G35560.1	DENN (AEX-3) domain-containing protein 	LOC_Os02g53700.7	"DENN domain containing protein, expressed"	Medtr7g117470.1	DENN; uDENN 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219689.1.S1_s_at	A	A1TS	POPTR_0006s14550	POPTR_0006s14550 (11)	scaffold_6:11881854-11883899(+) (11)	NA	Q6NXD8	DENN domain-containing protein 5B	AT5G35560.1	DENN (AEX-3) domain-containing protein 	LOC_Os02g53700.7	"DENN domain containing protein, expressed"	Medtr7g117470.1	DENN; uDENN 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21969.1.S1_at	A	A1TS	POPTR_0010s08910	POPTR_0010s08910 (9)	scaffold_10:9705613-9706337(-) (9)	NA	Q75LD5	Probable ion channel CASTOR	AT5G43745.1	Protein of unknown function (DUF1012) 	LOC_Os03g06720.1	expressed protein	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219691.1.S1_at	A	A1TS	POPTR_0006s14450	POPTR_0006s14450 (11)	scaffold_6:11806218-11809082(-) (11)	NA	NA	NA	AT2G06040.1	"CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). "	LOC_Os08g35700.1	"Leucine Rich Repeat family protein, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.219693.1.S1_at	A	A1TS	POPTR_0006s14420	POPTR_0006s14420 (11)	scaffold_6:11771752-11772966(-) (11)	NA	Q3UDE2	Tubulin--tyrosine ligase-like protein 12	AT1G77550.1	tubulin-tyrosine ligases;tubulin-tyrosine ligases 	LOC_Os03g08140.1	"tubulin--tyrosine ligase-like protein 12, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0005515|protein binding||GO:0004835|tubulin-tyrosine ligase activity	NA
PtpAffx.219696.1.S1_at	A	A1TS	POPTR_0006s14340	POPTR_0006s14340 (11)	scaffold_6:11664645-11664679(-) (11)	NA	O65351	Subtilisin-like protease	AT2G05920.1	Subtilase family protein 	LOC_Os09g26920.1	"OsSub57 - Putative Subtilisin homologue, expressed"	Medtr2g049250.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.219697.1.S1_s_at	A	A1TS	POPTR_0006s14330	POPTR_0006s14330 (11)	scaffold_6:11661314-11662687(+) (11)	NA	NA	NA	AT5G20635.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink). "	LOC_Os09g26999.1	"keratin-associated protein 5-4, putative, expressed"	Medtr8g132500.1	TNFR/CD27/30/40/95 cysteine-rich region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219698.1.S1_at	A	A1TS	POPTR_0006s14320	POPTR_0006s14320 (11)	scaffold_6:11643913-11645294(-) (11)	NA	Q9ZUF7	Protein LURP-one-related 6	AT2G05910.1	Protein of unknown function (DUF567) 	LOC_Os04g36830.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g049390.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219699.1.S1_at	A	A1TS	POPTR_0006s14315	POPTR_0006s14315 (11)	scaffold_6:11634858-11635446(+) (11)	NA	Q9Y7K2	Phosphatidylinositol 3-kinase tor2	AT1G50030.2	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2197.1.A1_s_at	A	A2TS	POPTR_0012s03450	POPTR_0015s05500 (11)//POPTR_0012s03450 (11)	scaffold_12:2732622-2732658(+) (11)//scaffold_15:5835886-5835922(-) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g38260.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.2197.2.A1_s_at	A	A1TS	POPTR_0004s07620	POPTR_0004s07620 (11)	scaffold_4:6255596-6256363(+) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g21940.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.2197.3.S1_a_at	A	A1TS	POPTR_0015s05500	POPTR_0015s05500 (11)	scaffold_15:5835005-5835173(-) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g21940.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.2197.6.A1_at	A	A1MS	POPTR_0004s07620	POPTR_0004s07620 (11)	scaffold_4:6255824-6256187(+) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g21940.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.219700.1.S1_at	A	A1TS	POPTR_0006s14290	POPTR_0006s14290 (9)	scaffold_6:11610413-11611222(-) (9)	NA	NA	NA	NA	NA	LOC_Os07g42250.1	"strictosidine synthase, putative, expressed"	Medtr2g049560.1	"Strictosidine synthase; TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219701.1.S1_at	A	A1TS	POPTR_0006s14250	POPTR_0006s14250 (11)	scaffold_6:11579411-11579956(-) (11)	NA	NA	NA	AT5G20680.3	TRICHOME BIREFRINGENCE-LIKE 16 	LOC_Os11g13800.1	expressed protein	Medtr8g132670.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219703.1.S1_at	A	A1TS	POPTR_0006s14240	POPTR_0006s14240 (11)	scaffold_6:11545315-11545975(-) (11)	NA	NA	NA	AT1G72490.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os09g26840.1	expressed protein	Medtr2g049790.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219704.1.S1_at	A	A1TS	POPTR_0006s14210	POPTR_0006s14210 (11)	scaffold_6:11519936-11520680(+) (11)	NA	P30167	Actin-58	AT5G09810.1	actin 7 	LOC_Os01g73310.1	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.219705.1.S1_at	A	A1TS	POPTR_0006s14190	POPTR_0006s14190 (11)	scaffold_6:11511153-11511657(+) (11)	NA	Q3E991	Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690	AT3G42880.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g09860.1	expressed protein	Medtr8g132720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219706.1.S1_at	A	A1TS	POPTR_0006s14130	POPTR_0006s14130 (11)	scaffold_6:11428794-11429470(-) (11)	NA	P49676	Beta-galactosidase	AT5G20710.1	beta-galactosidase 7 	LOC_Os01g34920.1	"beta-galactosidase precursor, putative, expressed"	Medtr5g023990.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.219707.1.S1_at	A	A1TS	POPTR_0006s14090	POPTR_0006s14090 (11)	scaffold_6:11399326-11399687(+) (11)	NA	Q84QC2	Ethylene-responsive transcription factor ERF017	AT1G19210.1	Integrase-type DNA-binding superfamily protein 	LOC_Os08g35240.1	AP2 domain containing protein	Medtr2g050000.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.219708.1.S1_at	A	A1TS	POPTR_0006s14070	POPTR_0006s14070 (11)	scaffold_6:11366919-11367479(+) (11)	NA	P93022	Auxin response factor 7	AT5G20730.2	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os06g09660.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.219710.1.S1_at	A	A1TS	POPTR_0006s14050	POPTR_0006s14050 (11)	scaffold_6:11306281-11306699(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219713.1.S1_at	A	A1TS	POPTR_0006s13990	POPTR_0006s13990 (11)	scaffold_6:11228053-11228588(-) (11)	NA	Q9LMA1	Probable flavin-containing monooxygenase 1	AT1G19250.1	flavin-dependent monooxygenase 1 	LOC_Os03g08410.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr8g132980.1	"Amine oxidase; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219714.1.S1_at	A	A1TS	POPTR_0006s13950	POPTR_0006s13950 (11)	scaffold_6:11206497-11207526(+) (11)	NA	O81211	Respiratory burst oxidase homolog protein E	AT1G19230.1	Riboflavin synthase-like superfamily protein 	LOC_Os08g35210.1	"ferric reductase, putative, expressed"	Medtr1g099800.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.219715.1.S1_at	A	A1TS	POPTR_0006s13950	POPTR_0006s13950 (11)	scaffold_6:11202252-11202801(+) (11)	NA	O81211	Respiratory burst oxidase homolog protein E	AT1G19230.1	Riboflavin synthase-like superfamily protein 	LOC_Os08g35210.1	"ferric reductase, putative, expressed"	Medtr1g099800.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.219716.1.S1_at	A	A1TS	POPTR_0006s13930	POPTR_0006s13930 (11)	scaffold_6:11166452-11167458(-) (11)	NA	Q84WM7	Pectinesterase PPME1	AT1G69940.1	Pectin lyase-like superfamily protein 	LOC_Os12g37660.1	"pectinesterase, putative, expressed"	Medtr8g133070.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.219717.1.S1_at	A	A1TS	POPTR_0006s13920	POPTR_0006s13920 (11)	scaffold_6:11151049-11151404(+) (11)	NA	NA	NA	AT5G20820.1	SAUR-like auxin-responsive protein family  	LOC_Os08g35110.1	"OsSAUR33 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g133100.1	"auxin-responsive protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219718.1.S1_at	A	A1TS	POPTR_0006s13910	POPTR_0006s13910 (11)	scaffold_6:11094105-11095289(-) (11)	NA	Q40863	Embryogenesis-associated protein EMB8	AT2G03140.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g26570.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr8g133150.1	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.219719.1.S1_at	A	A1TS	POPTR_0006s13890	POPTR_0006s13890 (11)	scaffold_6:11062063-11062747(-) (11)	NA	Q54NP8	Kinesin-related protein 4	AT3G43210.1	ATP binding microtubule motor family protein 	LOC_Os01g33040.1	"kinesin motor domain containing protein, expressed"	Medtr8g133190.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.219720.1.S1_at	A	A1TS	POPTR_0006s13860	POPTR_0006s13860 (10)	scaffold_6:11045116-11046277(+) (10)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G43220.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.1	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219720.1.S1_x_at	A	A1TS	POPTR_0006s13860	POPTR_0006s13860 (10)	scaffold_6:11045116-11046277(+) (10)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G43220.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.1	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219721.1.S1_at	A	A1TS	POPTR_0006s13740	POPTR_0006s13740 (11)	scaffold_6:10961866-10962456(+) (11)	NA	Q3E989	Probable pectinesterase/pectinesterase inhibitor 54	AT5G20860.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr7g046950.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.219722.1.S1_at	A	A1TS	POPTR_0006s13740	POPTR_0006s13740 (10)	scaffold_6:10959667-10959851(+) (11)	NA	Q3E989	Probable pectinesterase/pectinesterase inhibitor 54	AT5G20860.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr7g046950.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.219723.1.S1_at	A	A1TS	POPTR_0006s13720	POPTR_0006s13720 (10)	scaffold_6:10955014-10957328(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219724.1.S1_at	A	A1TS	POPTR_0006s13710	POPTR_0006s13710 (11)	scaffold_6:10933683-10934208(+) (11)	NA	Q8GT41	Putative invertase inhibitor	AT5G64620.1	cell wall / vacuolar inhibitor of fructosidase 2 	LOC_Os04g49730.1	"invertase/pectin methylesterase inhibitor family protein, putative"	Medtr8g009110.1	"Putative invertase inhibitor precursor, "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.219725.1.S1_at	A	A1TS	POPTR_0006s13700	POPTR_0006s13700 (11)	scaffold_6:10927644-10928180(+) (11)	NA	Q43111	Pectinesterase 3	AT1G53840.1	pectin methylesterase 1 	LOC_Os04g38560.1	"pectinesterase, putative, expressed"	Medtr8g026630.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.219726.1.S1_at	A	A1TS	POPTR_0006s13690	POPTR_0006s13690 (11)	scaffold_6:10920623-10921078(+) (11)	NA	Q7Y201	Probable pectinesterase/pectinesterase inhibitor 13	AT2G26450.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os09g26360.1	"pectinesterase, putative, expressed"	Medtr8g133300.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.219727.1.S1_at	A	A1TS	POPTR_0006s13680	POPTR_0006s13680 (11)	scaffold_6:10911381-10911842(+) (11)	NA	O48711	Probable pectinesterase/pectinesterase inhibitor 12	AT2G26440.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os06g09340.1	"pectinesterase, putative, expressed"	Medtr2g052270.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.219729.1.S1_s_at	A	A2TS	POPTR_0006s13640	POPTR_0006s13650 (11)//POPTR_0006s13640 (11)	scaffold_6:10856408-10856761(-) (11)//scaffold_6:10870798-10871151(-) (11)	NA	Q9SMZ4	Alpha-aminoadipic semialdehyde synthase	AT4G33150.2	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme 	LOC_Os02g54254.1	"saccharopine dehydrogenase, putative, expressed"	Medtr8g133370.1	"NAD(P) transhydrogenase, alpha subunit; Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme conserved region "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.21973.1.A1_at	A	A2TS	POPTR_0007s06180	POPTR_0007s06180 (11)//POPTR_0007s06710 (9)	scaffold_7:4352730-4353148(+) (11)//scaffold_7:5088262-5088684(-) (9)	NA	Q39237	Transcription factor TGA1	AT5G65210.5	bZIP transcription factor family protein 	LOC_Os04g54474.3	"transcription factor, putative, expressed"	Medtr3g100900.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.219730.1.S1_at	A	A1TS	POPTR_0006s13660	POPTR_0006s13660 (11)	scaffold_6:10883738-10883866(+) (11)//scaffold_874:1843-1971(+) (11)	NA	Q9LSM5	Protein SGT1 homolog At5g65490	AT5G65490.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g34740.1	"SGT1 protein, putative, expressed"	AC233845_5.1	SGT1 AC233845.2 7966-12121 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219731.1.S1_at	A	A1TS	POPTR_0006s13610	POPTR_0006s13610 (11)	scaffold_6:10815270-10815909(-) (11)	NA	P86397	"Hydroxyacyl-thioester dehydratase type 2, mitochondrial"	AT5G60335.1	Thioesterase superfamily protein 	LOC_Os05g09370.3	"kinase, pfkB family, putative, expressed"	Medtr5g095000.1	MaoC-like dehydratase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.219732.1.S1_at	A	A1TS	POPTR_0006s13600	POPTR_0006s13600 (10)	scaffold_6:10813284-10814223(+) (10)	NA	NA	NA	AT1G07910.2	RNAligase 	LOC_Os07g09400.1	"RNA ligase isoform 1, putative, expressed"	Medtr4g080530.1	"ATRNL/RNL, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219733.1.S1_at	A	A1MS	POPTR_0006s13590	POPTR_0006s13590 (10)	scaffold_6:10805888-10806451(+) (11)	NA	Q14FG5	DNA-directed RNA polymerase subunit beta	ATCG00190.1	RNA polymerase subunit beta 	LOC_Os04g16820.1	"DNA-directed RNA polymerase subunit beta, putative, expressed"	Medtr1g071250.1	"Photosystem antenna protein-like; RNA polymerase Rpb2, domain 6; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219735.1.S1_at	A	A1TS	POPTR_0006s13570	POPTR_0006s13570 (11)	scaffold_6:10787141-10789442(-) (11)	NA	Q3UYK3	TBC1 domain family member 9	AT2G37290.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g61860.1	"TBC domain containing protein, expressed"	Medtr1g146610.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.219736.1.S1_at	A	A1TS	POPTR_0006s13560	POPTR_0006s13560 (11)	scaffold_6:10785066-10785451(+) (11)	NA	Q9LQQ8	Probable serine/threonine-protein kinase RLCKVII	AT5G02800.1	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g120700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219737.1.S1_s_at	A	A1TS	POPTR_0006s13530	POPTR_0006s13530 (11)	scaffold_6:10749374-10749652(+) (11)	NA	Q54IF9	Myb-like protein G	AT3G09600.1	Homeodomain-like superfamily protein 	LOC_Os02g45670.1	"myb-like DNA-binding domain containing protein, expressed"	AC235567_21.1	Homeodomain-related AC235567.1 79376-72886 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219739.1.S1_at	A	A1TS	POPTR_0006s13500	POPTR_0006s13500 (11)	scaffold_6:10713201-10714517(-) (11)	NA	Q8GYL7	"Pentatricopeptide repeat-containing protein At5g02830, chloroplastic"	AT5G02830.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g17634.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g120750.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219740.1.S1_at	A	A1TS	POPTR_0006s13460	POPTR_0006s13460 (11)	scaffold_6:10684788-10684861(-) (11)	NA	P47927	Floral homeotic protein APETALA 2	AT2G28550.3	related to AP2.7 	LOC_Os07g13170.2	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.219740.1.S1_s_at	A	A1TS	POPTR_0006s13460	POPTR_0006s13460 (11)	scaffold_6:10684848-10685166(-) (11)	NA	P47927	Floral homeotic protein APETALA 2	AT2G28550.3	related to AP2.7 	LOC_Os07g13170.2	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.219741.1.S1_at	A	A1TS	POPTR_0006s13460	POPTR_0006s13460 (11)	scaffold_6:10683459-10684284(-) (11)	NA	P47927	Floral homeotic protein APETALA 2	AT2G28550.3	related to AP2.7 	LOC_Os07g13170.2	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.219742.1.S1_at	A	A1TS	POPTR_0006s13450	POPTR_0006s13450 (11)	scaffold_6:10664983-10665050(+) (11)	NA	Q8BT14	CCR4-NOT transcription complex subunit 4	AT5G60170.2	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g01190.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g080070.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.219743.1.S1_at	A	A1TS	POPTR_0006s13430	POPTR_0006s13430 (11)	scaffold_6:10633389-10633785(-) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT2G37050.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	Medtr7g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219744.1.S1_at	A	A1TS	POPTR_0006s13420	POPTR_0006s13420 (11)	scaffold_6:10624701-10624802(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219744.1.S1_x_at	A	A1TS	POPTR_0006s13420	POPTR_0006s13420 (11)	scaffold_6:10624701-10624810(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219745.1.S1_at	A	A1TS	POPTR_0006s13400	POPTR_0006s13400 (11)	scaffold_6:10611643-10613149(+) (11)	NA	Q9CWV1	DNA replication licensing factor MCM8	AT3G09660.1	minichromosome maintenance 8 	LOC_Os05g38850.1	MCM8 - Putative minichromosome maintenance MCM family subunit 8	Medtr7g120880.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0016887|ATPase activity	NA
PtpAffx.219746.1.S1_at	A	A1TS	POPTR_0006s13390	POPTR_0006s13390 (11)	scaffold_6:10601820-10602263(-) (11)	NA	NA	NA	AT3G09670.2	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g38810.1	"PWWP domain containing protein, expressed"	Medtr2g126820.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219747.1.S1_at	A	A1TS	POPTR_0006s13380	POPTR_0006s13380 (11)	scaffold_6:10591392-10591891(-) (11)	NA	NA	NA	AT3G53320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37070.1); Has 11044 Blast hits to 5993 proteins in 551 species: Archae - 8; Bacteria - 1486; Metazoa - 4078; Fungi - 1814; Plants - 348; Viruses - 112; Other Eukaryotes - 3198 (source: NCBI BLink). 	LOC_Os05g03060.1	expressed protein	Medtr7g120900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219748.1.S1_at	A	A1TS	POPTR_0006s13350	POPTR_0006s13350 (11)	scaffold_6:10553618-10554426(-) (11)	NA	NA	NA	AT5G02970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g17900.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr7g120960.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219748.1.S1_x_at	A	A1TS	POPTR_0006s13350	POPTR_0006s13350 (11)	scaffold_6:10553618-10554417(-) (11)	NA	NA	NA	AT5G02970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g17900.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr7g120960.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219749.1.S1_at	A	A1TS	POPTR_0006s13300	POPTR_0006s13300 (10)	scaffold_6:10527462-10528613(+) (11)	NA	Q9FYP9	Importin subunit alpha-2	AT5G03070.1	importin alpha isoform 9 	LOC_Os01g06470.1	expressed protein	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219750.1.S1_at	A	A1TS	POPTR_0006s13300	POPTR_0006s13300 (10)	scaffold_6:10525752-10526376(+) (11)	NA	Q9FYP9	Importin subunit alpha-2	AT5G03070.1	importin alpha isoform 9 	LOC_Os01g06470.1	expressed protein	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219751.1.S1_at	A	A1TS	POPTR_0006s13210	POPTR_0006s13210 (10)	scaffold_6:10457181-10457398(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219752.1.S1_at	A	A1TS	POPTR_0006s13170	POPTR_0006s13170 (11)	scaffold_6:10390083-10391222(+) (11)	NA	Q94KB9	MLO-like protein 3	AT3G45290.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr2g110820.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.219753.1.S1_at	A	A1TS	POPTR_0006s13140	POPTR_0006s13140 (9)	scaffold_6:10371919-10372627(+) (11)	NA	O49255	NAC domain-containing protein 29	AT1G61110.1	NAC domain containing protein 25 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g121260.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.219754.1.S1_at	A	A1TS	POPTR_0006s13100	POPTR_0006s13100 (11)	scaffold_6:10320584-10321886(+) (11)	NA	NA	NA	AT3G09760.1	RING/U-box superfamily protein 	LOC_Os06g46366.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr4g081620.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219755.1.S1_at	A	A1MS	POPTR_0006s13030	POPTR_0006s13030 (10)	scaffold_6:10256821-10257375(+) (10)	NA	Q9S7D9	Serine/threonine-protein kinase-like protein CCR1	AT3G09780.1	CRINKLY4 related 1 	LOC_Os09g19700.1	"protein kinase domain containing protein, expressed"	Medtr4g041620.1	Tyrosine protein kinase; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219756.1.S1_x_at	A	A1TS	POPTR_0006s13020	POPTR_0006s13020 (11)	scaffold_6:10252184-10252329(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219757.1.S1_at	A	A1MS	POPTR_0006s12950	POPTR_0006s12950 (11)	scaffold_6:10209827-10209862(+) (11)	NA	Q6NPF8	UPF0497 membrane protein At2g37200	AT2G37200.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g10870.1	"membrane associated DUF588 domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219757.1.S1_s_at	A	A1TS	POPTR_0006s12950	POPTR_0006s12950 (11)	scaffold_6:10209848-10209993(+) (11)	NA	Q6NPF8	UPF0497 membrane protein At2g37200	AT2G37200.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g10870.1	"membrane associated DUF588 domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219759.1.S1_at	A	A1TS	POPTR_0006s12940	POPTR_0006s12940 (11)	scaffold_6:10204706-10204988(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219763.1.S1_x_at	A	A1TS	POPTR_0006s12880	POPTR_0006s12880 (10)	scaffold_6:10045752-10045976(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219764.1.S1_at	A	A1TS	POPTR_0006s12850	POPTR_0006s12850 (11)	scaffold_6:10014749-10015084(-) (11)	NA	NA	NA	AT2G37035.1	unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os10g33820.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219765.1.S1_at	A	A1TS	POPTR_0006s12840	POPTR_0006s12840 (11)	scaffold_6:9996752-9996888(+) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT2G37030.1	SAUR-like auxin-responsive protein family  	LOC_Os04g43740.1	"OsSAUR18 - Auxin-responsive SAUR gene family member, expressed"	Medtr1g076620.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219766.1.S1_at	A	A1TS	POPTR_0006s12830	POPTR_0006s12830 (11)	scaffold_6:9988894-9989821(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219767.1.S1_at	A	A1TS	POPTR_0006s12800	POPTR_0006s12800 (11)	scaffold_6:9973810-9974623(+) (11)	NA	Q9SJK6	Putative white-brown complex homolog protein 30	AT2G37010.1	non-intrinsic ABC protein 12 	LOC_Os11g22350.1	"white-brown complex homolog protein, putative, expressed"	Medtr1g120480.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.219768.1.S1_at	A	A1TS	POPTR_0006s12790	POPTR_0006s12790 (11)	scaffold_6:9953635-9954037(-) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT3G09830.2	Protein kinase superfamily protein 	LOC_Os02g57420.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr1g076510.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219769.1.S1_at	A	A1TS	POPTR_0006s12770	POPTR_0006s12770 (11)	scaffold_6:9934728-9935159(+) (11)	NA	O23875	Transcription factor PCF1	AT3G47620.1	"TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 "	LOC_Os04g44440.1	"TCP family transcription factor, putative, expressed"	Medtr1g076470.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219770.1.S1_at	A	A1TS	POPTR_0006s12750	POPTR_0006s12750 (11)	scaffold_6:9918087-9918228(-) (11)	NA	NA	NA	AT2G36985.1	DVL family protein 	NA	NA	Medtr1g076400.1	DVL 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219771.1.S1_at	A	A1TS	POPTR_0006s12730	POPTR_0006s12730 (11)	scaffold_6:9881317-9882093(+) (11)	NA	Q8LJT8	TSL-kinase interacting protein 1	AT2G36960.2	TSL-kinase interacting protein 1 	LOC_Os03g13790.2	"myb/SANT domain protein, putative, expressed"	Medtr4g141280.1	"myb/SANT domain protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219772.1.S1_at	A	A1TS	POPTR_0006s12700	POPTR_0006s12700 (11)	scaffold_6:9858104-9858498(+) (11)	NA	Q7ZYA2	Transcription initiation factor TFIID subunit 8	AT4G34340.1	TBP-associated factor 8 	LOC_Os12g38620.3	"bromodomain associated family protein, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219772.1.S1_x_at	A	A1TS	POPTR_0006s12700	POPTR_0006s12700 (11)	scaffold_6:9858104-9858583(+) (11)	NA	Q7ZYA2	Transcription initiation factor TFIID subunit 8	AT4G34340.1	TBP-associated factor 8 	LOC_Os12g38620.3	"bromodomain associated family protein, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219773.1.S1_at	A	A1TS	POPTR_0006s12690	POPTR_0006s12690 (11)	scaffold_6:9850642-9850726(+) (11)	NA	NA	NA	AT3G09870.1	SAUR-like auxin-responsive protein family  	NA	NA	AC235487_13.1	Auxin responsive SAUR protein AC235487.1 70356-69961 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219773.1.S1_x_at	A	A1TS	POPTR_0006s12690	POPTR_0006s12690 (11)	scaffold_6:9850642-9850782(+) (11)	NA	NA	NA	AT3G09870.1	SAUR-like auxin-responsive protein family  	NA	NA	AC235487_13.1	Auxin responsive SAUR protein AC235487.1 70356-69961 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219774.1.S1_at	A	A1TS	POPTR_0006s12670	POPTR_0006s12670 (11)	scaffold_6:9824851-9825493(+) (11)	NA	Q9LSL9	Pentatricopeptide repeat-containing protein At5g65560	AT5G65560.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g47570.1	"PPR repeat containing protein, expressed"	Medtr5g033110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219775.1.S1_x_at	A	A1TS	POPTR_0006s12660	POPTR_0006s12660 (11)	scaffold_6:9800823-9801223(+) (11)	NA	NA	NA	AT5G03380.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g05750.1	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr7g123850.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.219776.1.S1_at	A	A1TS	POPTR_0006s12650	POPTR_0006s12650 (11)	scaffold_6:9794396-9794576(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219777.1.S1_s_at	A	A1TS	POPTR_0006s12640	POPTR_0006s12640 (11)	scaffold_6:9786522-9788225(-) (11)	NA	Q9HLX5	Histidyl-tRNA synthetase	AT3G46100.1	Histidyl-tRNA synthetase 1 	LOC_Os02g51830.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr7g123930.1	Histidyl-tRNA synthetase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.219778.1.S1_at	A	A1MS	POPTR_0006s12630	POPTR_0006s12630 (10)	scaffold_6:9784851-9785759(+) (10)	NA	Q6UDF0	Mannan synthase 1	AT5G03760.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os02g09930.1	"CSLA1 - cellulose synthase-like family A; mannan synthase, expressed"	Medtr4g073490.3	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219779.1.S1_at	A	A1TS	POPTR_0006s12580	POPTR_0006s12580 (11)	scaffold_6:9725404-9726320(+) (11)	NA	NA	NA	AT2G43630.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os02g39340.1	"glycine-rich protein, putative, expressed"	Medtr6g013280.1	glycine-rich protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219780.1.S1_at	A	A1TS	POPTR_0006s12570	POPTR_0006s12570 (11)	scaffold_6:9718192-9718372(-) (11)	NA	A4QN59	Diphthamide biosynthesis protein 2	AT3G59630.1	diphthamide synthesis DPH2 family protein 	LOC_Os11g16430.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr1g009470.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219782.1.S1_at	A	A1TS	POPTR_0006s12490	POPTR_0006s12490 (10)	scaffold_6:9653988-9655204(+) (10)	NA	O28033	Protein AF_2251	AT5G03430.1	phosphoadenosine phosphosulfate (PAPS) reductase family protein 	LOC_Os01g15490.1	"phosphoadenosine phosphosulfate, putative, expressed"	NA	NA	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	GO:0016740|transferase activity	NA
PtpAffx.219783.1.S1_at	A	A1TS	POPTR_0006s12440	POPTR_0006s12440 (10)	scaffold_6:9594308-9595375(+) (10)	NA	Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G27730.1	Protein of unknown function (DUF1624) 	LOC_Os01g70550.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr7g124030.1	"Heparan-alpha-glucosaminide N-acetyltransferase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219784.1.S1_at	A	A1TS	POPTR_0006s12430	POPTR_0006s12430 (11)	scaffold_6:9579226-9579713(-) (11)	NA	NA	NA	AT2G39210.1	Major facilitator superfamily protein 	LOC_Os03g58580.1	"nodulin, putative, expressed"	AC233660_5.1	Nodulin-like; Major facilitator superfamily MFS_1 AC233660.2 23536-25326 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219785.1.S1_at	A	A1TS	POPTR_0006s12400	POPTR_0006s12400 (11)	scaffold_6:9563439-9563886(-) (11)	NA	Q4JL76	Myb-related protein MYBAS2	AT3G53200.1	myb domain protein 27 	LOC_Os12g37970.1	"MYB family transcription factor, putative, expressed"	Medtr2g114450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219787.1.S1_s_at	A	A1TS	POPTR_0006s12290	POPTR_0006s12290 (11)	scaffold_6:9438009-9438676(-) (11)	NA	Q9UNX4	WD repeat-containing protein 3	AT3G21540.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g05720.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.219788.1.S1_at	A	A1TS	POPTR_0006s12270	POPTR_0006s12270 (11)	scaffold_6:9411594-9414217(-) (11)	NA	Q54F23	HEAT repeat-containing protein 7A homolog	AT2G36810.1	ARM repeat superfamily protein 	NA	NA	Medtr7g124100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219789.1.S1_at	A	A1TS	POPTR_0006s12260	POPTR_0006s12260 (11)	scaffold_6:9408002-9409152(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219790.1.S1_at	A	A1TS	POPTR_0006s12240	POPTR_0006s12240 (11)	scaffold_6:9385934-9386914(-) (11)	NA	Q54F23	HEAT repeat-containing protein 7A homolog	AT2G36810.1	ARM repeat superfamily protein 	LOC_Os03g05330.1	"HEAT repeat family protein, putative, expressed"	Medtr7g124130.1	"Oxidoreductase, molybdopterin binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219791.1.S1_at	A	A1TS	POPTR_0006s12220	POPTR_0006s12220 (11)	scaffold_6:9359590-9359902(-) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT3G53150.1	UDP-glucosyl transferase 73D1 	LOC_Os01g08110.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr5g048550.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219792.1.S1_at	A	A1TS	POPTR_0006s12170	POPTR_0006s12170 (11)	scaffold_6:9321068-9321862(-) (11)	NA	Q9ZQA3	Probable pectinesterase 15	AT2G36710.1	Pectin lyase-like superfamily protein 	LOC_Os09g39760.1	"pectinesterase, putative, expressed"	Medtr7g124370.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.219794.1.S1_at	A	A1TS	POPTR_0006s12130	POPTR_0006s12130 (10)	scaffold_6:9293967-9294178(+) (11)	NA	NA	NA	AT5G51200.1	Protein of unknown function (DUF3414) 	LOC_Os02g10790.1	expressed protein	Medtr7g118310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219795.1.S1_at	A	A1TS	POPTR_0006s12120	POPTR_0006s12120 (11)	scaffold_6:9278914-9281367(+) (11)	NA	Q92621	Nuclear pore complex protein Nup205	AT5G51200.1	Protein of unknown function (DUF3414) 	LOC_Os02g10790.1	expressed protein	Medtr7g118310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219796.1.S1_at	A	A1TS	POPTR_0006s12120	POPTR_0006s12120 (10)	scaffold_6:9270348-9272491(+) (11)	NA	Q92621	Nuclear pore complex protein Nup205	AT5G51200.1	Protein of unknown function (DUF3414) 	LOC_Os02g10790.1	expressed protein	Medtr7g118310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219797.1.S1_at	A	A1TS	POPTR_0006s12090	POPTR_0006s12090 (11)	scaffold_6:9235570-9237069(-) (11)	NA	Q67Y83	Serine carboxypeptidase-like 51	AT2G27920.1	serine carboxypeptidase-like 51 	LOC_Os03g27480.1	"OsSCP14 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g113720.2	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.219798.1.S1_at	A	A1TS	POPTR_0006s12070	POPTR_0006s12070 (11)	scaffold_6:9224195-9224882(+) (11)	NA	NA	NA	AT3G09925.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g39890.1	"POEI31 - Pollen Ole e I allergen and extensin family protein precursor, putative, expressed"	Medtr7g124480.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219799.1.S1_at	A	A1TS	POPTR_0006s12020	POPTR_0006s12020 (11)	scaffold_6:9187191-9187653(-) (11)	NA	Q9CS00	Uncharacterized protein C19orf29 homolog	AT1G03910.1	"EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). "	LOC_Os03g58590.1	expressed protein	Medtr7g124550.1	"Uncharacterized protein C19orf29 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219800.1.S1_at	A	A1TS	POPTR_0006s12010	POPTR_0006s12010 (11)	scaffold_6:9184477-9185538(+) (11)	NA	Q9SJK3	Argonaute-like protein At2g27880	AT2G27880.1	Argonaute family protein 	LOC_Os03g58600.1	"PAZ domain containing protein, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219801.1.S1_at	A	A1TS	POPTR_0006s12000	POPTR_0006s12000 (11)	scaffold_6:9173235-9173437(+) (11)	NA	Q9LZM4	Wall-associated receptor kinase-like 20	AT5G02070.1	Protein kinase family protein 	LOC_Os05g25390.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr3g092070.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219802.1.S1_at	A	A1TS	POPTR_0006s11970	POPTR_0006s11970 (11)	scaffold_6:9142017-9143051(-) (11)	NA	Q9LZC5	GDSL esterase/lipase At5g03820	AT5G03820.1	GDSL-like Lipase/Acylhydrolase family protein 	LOC_Os06g05550.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g121910.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.219803.1.S1_at	A	A1TS	POPTR_0006s11960	POPTR_0006s11960 (11)	scaffold_6:9140833-9140994(-) (11)	NA	P42813	Ribonuclease 1	AT2G02990.1	ribonuclease 1 	LOC_Os08g33710.1	"ribonuclease T2 family domain containing protein, expressed"	Medtr5g044290.1	Ribonuclease T2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219804.1.S1_at	A	A1TS	POPTR_0006s11950	POPTR_0006s11950 (11)	scaffold_6:9136008-9136537(+) (11)	NA	Q9SA65	Putative clathrin assembly protein At1g03050	AT1G03050.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g35160.1	"clathrin assembly protein, putative, expressed"	Medtr2g008320.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.219805.1.S1_at	A	A1MS	POPTR_0006s11930	POPTR_0006s11930 (9)	scaffold_6:9125517-9126516(-) (10)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G03795.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr1g073800.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.219807.1.S1_at	A	A1TS	POPTR_0006s11900	POPTR_0006s11900 (11)	scaffold_6:9105476-9105735(+) (11)	NA	Q9UPE1	Serine/threonine-protein kinase SRPK3	AT3G53030.1	ser/arg-rich protein kinase 4 	LOC_Os03g53720.1	"SRPK4, putative, expressed"	Medtr1g073750.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219808.1.S1_at	A	A1TS	POPTR_0006s11890	POPTR_0006s11890 (11)	scaffold_6:9096339-9096544(+) (11)	NA	Q9LZR0	Putative homeobox-leucine zipper protein ATHB-51	AT5G03790.1	homeobox 51 	LOC_Os02g49700.1	"homeobox associated leucine zipper, putative, expressed"	Medtr1g073710.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.219809.1.S1_s_at	A	A1TS	POPTR_0006s11870	POPTR_0006s11870 (10)	scaffold_6:9058048-9058449(-) (10)	NA	NA	NA	AT1G21200.1	sequence-specific DNA binding transcription factors 	LOC_Os11g06410.3	"homeodomain, putative, expressed"	Medtr1g073690.1	"Homeodomain-like, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219810.1.S1_at	A	A1TS	POPTR_0006s11820	POPTR_0006s11820 (11)	scaffold_6:9018822-9019117(+) (11)	NA	NA	NA	AT3G23160.1	Protein of unknown function (DUF668) 	LOC_Os03g64130.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr1g073550.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219810.1.S1_s_at	A	A1TS	POPTR_0006s11820	POPTR_0006s11820 (11)	scaffold_6:9018926-9019387(+) (11)	NA	NA	NA	AT3G23160.1	Protein of unknown function (DUF668) 	LOC_Os03g64130.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr1g073550.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219812.1.S1_at	A	A1TS	POPTR_0006s11720	POPTR_0006s11720 (11)	scaffold_6:8928007-8928725(-) (11)	NA	Q9SJQ6	Protein ROS1	AT2G36490.1	demeter-like 1 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	NA
PtpAffx.219813.1.S1_at	A	A1TS	POPTR_0006s11720	POPTR_0006s11720 (11)	scaffold_6:8924639-8926640(-) (11)	NA	Q9SJQ6	Protein ROS1	AT2G36490.1	demeter-like 1 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	NA
PtpAffx.219814.1.S1_at	A	A1TS	POPTR_0006s11710	POPTR_0006s11710 (11)	scaffold_6:8910836-8912253(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G03730.1	Protein kinase superfamily protein 	LOC_Os09g39320.1	"CTR1-like protein kinase, putative, expressed"	Medtr1g068560.1	"Serine/threonine-protein kinase CTR1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219815.1.S1_at	A	A2TS	POPTR_0006s11680	POPTR_0006s11680 (11)//POPTR_0946s00200 (9)	scaffold_6:8895874-8897068(-) (11)//scaffold_946:7743-8096(-) (9)	NA	Q8GYY1	Heat stress transcription factor A-3	AT5G03720.1	heat shock transcription factor A3 	LOC_Os02g32590.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.219816.1.S1_at	A	A1TS	POPTR_0006s11670	POPTR_0006s11670 (11)	scaffold_6:8889836-8889970(-) (11)//scaffold_946:151-285(-) (11)	NA	NA	NA	AT2G36485.1	ENTH/VHS family protein 	LOC_Os09g39270.1	"ZOS9-20 - C2H2 zinc finger protein, expressed"	Medtr7g126610.1	"Regulation of nuclear pre-mRNA protein; Zinc finger, C2H2-type; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219816.1.S1_s_at	A	A1TS	POPTR_0006s11670	POPTR_0006s11670 (11)	scaffold_6:8889609-8889823(-) (11)	NA	NA	NA	AT2G36485.1	ENTH/VHS family protein 	LOC_Os09g39270.1	"ZOS9-20 - C2H2 zinc finger protein, expressed"	Medtr7g126610.1	"Regulation of nuclear pre-mRNA protein; Zinc finger, C2H2-type; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219817.1.S1_at	A	A1MS	POPTR_0006s11600	POPTR_0006s11600 (11)	scaffold_6:8811103-8811285(+) (11)	NA	Q08047	"1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic"	AT2G36390.1	starch branching enzyme 2.1 	LOC_Os04g33460.1	"1,4-alpha-glucan-branching enzyme 2, chloroplast precursor, putative, expressed"	Medtr7g126860.1	"Glycoside hydrolase, family 13, N-terminal; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.219818.1.S1_at	A	A1TS	POPTR_0006s11560	POPTR_0006s11560 (9)	scaffold_6:8763197-8765373(-) (9)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219819.1.S1_at	A	A1TS	POPTR_0006s11530	POPTR_0006s11530 (11)	scaffold_6:8734737-8735381(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21230.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219820.1.S1_at	A	A1TS	POPTR_0006s11520	POPTR_0006s11520 (11)	scaffold_6:8721112-8722083(-) (11)	NA	Q9ZVI7	Probable galacturonosyltransferase 7	AT2G38650.2	galacturonosyltransferase 7 	LOC_Os03g21250.1	"glycosyl transferase, family 8, putative, expressed"	Medtr7g081100.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.219821.1.S1_at	A	A1TS	POPTR_0006s11480	POPTR_0006s11480 (11)	scaffold_6:8689533-8689963(+) (11)	NA	NA	NA	AT5G01010.3	EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 76 Blast hits to 76 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219822.1.S1_at	A	A1TS	POPTR_0006s11440	POPTR_0006s11440 (11)	scaffold_6:8664853-8665480(+) (11)	NA	NA	NA	AT5G01015.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65295.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g27540.2	"CRP7 - Cysteine-rich family protein precursor, expressed"	Medtr7g089520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219822.1.S1_s_at	A	A1TS	POPTR_0006s11440	POPTR_0006s11440 (11)	scaffold_6:8664948-8665445(+) (11)	NA	NA	NA	AT5G01015.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65295.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g27540.2	"CRP7 - Cysteine-rich family protein precursor, expressed"	Medtr7g089520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219823.1.S1_at	A	A1TS	POPTR_0006s11370	POPTR_0006s11370 (11)	scaffold_6:8614317-8615777(+) (11)	NA	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219824.1.S1_s_at	A	A1TS	POPTR_0006s11360	POPTR_0006s11360 (11)	scaffold_6:8608972-8609783(-) (11)	NA	NA	NA	AT5G05320.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g05880.1	"monooxygenase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219826.1.S1_at	A	A1TS	POPTR_0006s11340	POPTR_0006s11340 (11)	scaffold_6:8599575-8600126(-) (11)	NA	NA	NA	AT3G05975.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os12g02700.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr7g080790.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.219827.1.S1_at	A	A1TS	POPTR_0006s11310	POPTR_0006s11310 (11)	scaffold_6:8584269-8585440(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g080750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219829.1.S1_at	A	A1TS	POPTR_0006s11290	POPTR_0006s11290 (11)	scaffold_6:8572914-8575012(-) (11)	NA	O14197	Uncharacterized transporter C5D6.04	AT5G01990.1	Auxin efflux carrier family protein 	LOC_Os01g60230.4	"auxin efflux carrier component, putative, expressed"	Medtr7g080730.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.219830.1.S1_at	A	A1TS	POPTR_0006s11270	POPTR_0006s11270 (11)	scaffold_6:8553938-8554504(-) (11)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT5G55040.2	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr8g005100.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219831.1.S1_at	A	A1TS	POPTR_0006s11260	POPTR_0006s11260 (11)	scaffold_6:8549948-8551069(-) (11)	NA	NA	NA	AT5G01970.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). 	LOC_Os05g25070.1	expressed protein	Medtr7g080690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219833.1.S1_at	A	A1TS	POPTR_0006s11240	POPTR_0006s11240 (11)	scaffold_6:8529647-8530221(-) (11)	NA	NA	NA	AT3G08600.1	Protein of unknown function (DUF1191) 	LOC_Os12g02550.1	expressed protein	Medtr7g080660.1	Protein of unknown function DUF1191 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219834.1.S1_s_at	A	A1TS	POPTR_0006s11190	POPTR_0006s11190 (11)	scaffold_6:8507883-8508211(+) (11)	NA	Q9C9Z1	Putative zinc transporter At3g08650	AT3G08650.2	ZIP metal ion transporter family 	LOC_Os05g25194.2	"metal cation transporter, putative, expressed"	Medtr7g080580.1	Zinc/iron permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219836.1.S1_at	A	A1MS	POPTR_0006s11150	POPTR_0006s11150 (10)	NA	NA	P27061	Acid phosphatase 1	AT2G38600.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os03g21480.1	"HAD superfamily phosphatase, putative, expressed"	Medtr8g005380.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.219845.1.S1_at	A	A1TS	POPTR_0008s18450	POPTR_0008s18450 (11)	scaffold_8:12416323-12416801(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g07160.1	expressed protein	Medtr8g129480.1	"glutathione S-transferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219845.1.S1_x_at	A	A1TS	POPTR_0008s18450	POPTR_0008s18450 (11)	scaffold_8:12416323-12416801(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g07160.1	expressed protein	Medtr8g129480.1	"glutathione S-transferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219849.1.S1_at	A	A1TS	POPTR_0011s02120	POPTR_0011s02120 (11)	scaffold_11:1735981-1736135(-) (10)//scaffold_11:1760764-1760918(-) (10)//scaffold_11:1788989-1789143(-) (11)//scaffold_11:1812814-1812963(-) (9)//scaffold_11:1833002-1833156(-) (9)//scaffold_11:3709672-3709826(-) (10)	POPTR_0011s02090 (7)//POPTR_0011s03660 (7)//POPTR_0011s02070 (7)//POPTR_0011s03620 (7)//POPTR_0011s02060 (6)//POPTR_0011s02180 (6)//POPTR_0011s02160 (6)	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT4G21380.1	receptor kinase 3 	LOC_Os04g54070.1	"receptor-like kinase, putative"	Medtr4g124500.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219849.1.S1_x_at	A	A1TS	POPTR_0011s02120	POPTR_0011s02120 (11)	scaffold_11:1735982-1736135(-) (9)//scaffold_11:1788990-1789234(-) (11)//scaffold_11:3709673-3709917(-) (9)	POPTR_0011s02070 (7)//POPTR_0011s03620 (7)//POPTR_0011s02090 (6)//POPTR_0011s02160 (6)	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT4G21380.1	receptor kinase 3 	LOC_Os04g54070.1	"receptor-like kinase, putative"	Medtr4g124500.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219850.1.S1_x_at	A	A1TS	POPTR_0011s02090	POPTR_0011s02090 (9)	scaffold_11:1762087-1766454(-) (11)	NA	Q9LPZ3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410	AT1G11410.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124540.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219855.1.S1_s_at	A	A2TS	POPTR_0036s00230	POPTR_0036s00230 (11)//POPTR_0010s01220 (9)	scaffold_10:1031470-1031723(-) (11)//scaffold_36:124122-124377(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219873.1.S1_at	A	A1TS	POPTR_0005s15280	POPTR_0005s15280 (11)	scaffold_5:12027704-12028112(+) (11)	NA	NA	NA	AT1G66890.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g093680.1	50S ribosomal protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219874.1.S1_at	A	A1TS	POPTR_0005s15300	POPTR_0005s15300 (11)	scaffold_5:12043153-12043728(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38260.1	Protein kinase superfamily protein 	LOC_Os01g49600.1	expressed protein	Medtr7g093700.1	"receptor serine/threonine kinase PR5K, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219875.1.S1_at	A	A1TS	POPTR_0005s15380	POPTR_0005s15380 (11)	scaffold_5:12083345-12083391(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	NA	NA	Medtr7g093700.1	"receptor serine/threonine kinase PR5K, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219876.1.S1_s_at	A	A1TS	POPTR_0005s15420	POPTR_0005s15420 (11)	scaffold_5:12099504-12100401(-) (11)	NA	Q9LF10	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT5G16180.1	ortholog of maize chloroplast splicing factor CRS1 	LOC_Os08g27150.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr2g121940.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.219881.1.S1_at	A	A1MS	POPTR_0554s00210	POPTR_0554s00210 (11)	scaffold_554:9172-9457(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21989.1.A1_a_at	A	A1TS	POPTR_0014s05650	POPTR_0014s05650 (11)	scaffold_14:4202621-4203344(-) (11)	NA	Q5XF59	"3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial"	AT3G60510.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os10g40540.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.219895.1.S1_s_at	A	A1TS	POPTR_0017s01630	POPTR_0017s01630 (11)	scaffold_17:1168953-1168990(+) (11)	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219902.1.S1_at	A	A1TS	POPTR_0017s09985	POPTR_0017s09985 (10)	scaffold_17:8803116-8805807(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219908.1.S1_s_at	A	A2TS	POPTR_0012s11900	POPTR_0012s11900 (11)//POPTR_0015s15800 (11)	scaffold_12:12255936-12256003(-) (11)//scaffold_15:15008192-15008259(+) (11)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.219934.1.S1_at	A	A1TS	POPTR_0001s45940	POPTR_0001s45940 (9)	scaffold_1:46446044-46446147(+) (9)//scaffold_725:6884-6987(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39080.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.219937.1.S1_at	A	A1TS	POPTR_0081s00240	POPTR_0081s00240 (10)	scaffold_81:85578-85934(-) (10)	NA	Q9C9H7	Receptor-like protein 12	AT2G15080.2	receptor like protein 19 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.219938.1.S1_at	A	A1TS	POPTR_0081s00250	POPTR_0081s00250 (11)	scaffold_81:93121-93488(+) (11)	NA	Q500Y9	NADH kinase	AT1G78590.1	NAD(H) kinase 3 	LOC_Os09g17680.1	"NAD kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219954.1.S1_s_at	A	A3TS	POPTR_0004s10150	POPTR_0004s10910 (11)//POPTR_0004s10150 (11)//POPTR_0004s10160 (11)	scaffold_4:8709906-8710463(+) (11)//scaffold_4:8723520-8724077(+) (11)//scaffold_4:9486971-9487525(-) (11)	NA	P23586	Sugar transport protein 1	AT1G11260.1	sugar transporter 1 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr5g044750.1	Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.219956.1.S1_at	A	A1TS	POPTR_0001s16240	POPTR_0001s16240 (11)	scaffold_1:13049445-13049842(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219957.1.S1_at	A	A1TS	POPTR_0001s16200	POPTR_0001s16200 (11)	scaffold_1:13017708-13018252(-) (11)	NA	NA	NA	AT1G53800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins in 242 species: Archae - 2; Bacteria - 216; Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other Eukaryotes - 493 (source: NCBI BLink). 	LOC_Os10g12354.1	"endonuclease, putative, expressed"	NA	NA	NA	GO:0004519|endonuclease activity	NA
PtpAffx.219958.1.S1_at	A	A1TS	POPTR_0001s16190	POPTR_0001s16190 (11)	scaffold_1:13011373-13012359(-) (11)	NA	NA	NA	AT1G53760.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786); Has 171 Blast hits to 171 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 127; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). "	LOC_Os02g05870.1	expressed protein	Medtr8g026990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219959.1.S1_at	A	A1TS	POPTR_0001s16160	POPTR_0001s16160 (11)	scaffold_1:12973170-12974138(-) (11)	NA	O59952	Lipase	AT3G14360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr5g017200.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.219960.1.S1_at	A	A1TS	POPTR_0001s16110	POPTR_0001s16110 (11)	scaffold_1:12934475-12934556(+) (11)	NA	Q9C7S5	Tyrosine-sulfated glycopeptide receptor 1	AT1G72300.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os02g05930.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219961.1.S1_at	A	A1TS	POPTR_0001s16100	POPTR_0001s16100 (11)	scaffold_1:12906290-12906730(-) (11)	NA	Q39090	Protein UNUSUAL FLORAL ORGANS	AT1G30950.1	F-box family protein 	LOC_Os06g45460.1	OsFBX202 - F-box domain containing protein	AC235671_9.1	Cyclin-like F-box AC235671.2 40453-36545 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219962.1.S1_at	A	A1TS	POPTR_0001s16070	POPTR_0001s16070 (11)	scaffold_1:12876636-12876768(-) (11)	NA	Q54M40	Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C	AT2G34980.1	phosphatidylinositolglycan synthase family protein 	LOC_Os02g40870.2	"phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative, expressed"	Medtr3g113640.1	Phosphatidylinositol N-acetylglucosaminyltransferase 	GO:0006506|GPI anchor biosynthetic process	GO:0017176|phosphatidylinositol N-acetylglucosaminyltransferase activity	GO:0016021|integral to membrane
PtpAffx.219962.1.S1_s_at	A	A2TS	POPTR_0001s16070	POPTR_0001s16070 (11)//POPTR_0003s07190 (11)	scaffold_1:12876765-12876972(-) (11)//scaffold_3:8783807-8784014(+) (11)	NA	Q54M40	Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C	AT2G34980.1	phosphatidylinositolglycan synthase family protein 	LOC_Os02g40870.2	"phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative, expressed"	Medtr3g113640.1	Phosphatidylinositol N-acetylglucosaminyltransferase 	GO:0006506|GPI anchor biosynthetic process	GO:0017176|phosphatidylinositol N-acetylglucosaminyltransferase activity	GO:0016021|integral to membrane
PtpAffx.219963.1.S1_at	A	A1TS	POPTR_0001s16060	POPTR_0001s16060 (11)	scaffold_1:12874141-12875634(+) (11)	NA	NA	NA	AT1G05780.1	Vacuolar ATPase assembly integral membrane protein VMA21-like domain 	LOC_Os04g52300.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219964.1.S1_at	A	A1TS	POPTR_0001s15980	POPTR_0001s15980 (11)	scaffold_1:12800786-12801774(-) (11)	NA	O64765	Probable UDP-N-acetylglucosamine pyrophosphorylase	AT1G31070.2	N-acetylglucosamine-1-phosphate uridylyltransferase 1 	LOC_Os04g52370.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.219964.1.S1_s_at	A	A1TS	POPTR_0001s15980	POPTR_0001s15980 (11)	scaffold_1:12800726-12802045(-) (11)	NA	O64765	Probable UDP-N-acetylglucosamine pyrophosphorylase	AT1G31070.2	N-acetylglucosamine-1-phosphate uridylyltransferase 1 	LOC_Os04g52370.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.219965.1.S1_at	A	A1TS	POPTR_0001s15940	POPTR_0001s15940 (11)	scaffold_1:12785584-12790342(-) (11)	NA	Q9Y5K3	Choline-phosphate cytidylyltransferase B	AT2G32260.1	phosphorylcholine cytidylyltransferase 	LOC_Os02g07720.2	"cytidylyltransferase domain containing protein, expressed"	Medtr4g089770.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.219965.1.S1_s_at	A	A2TS	POPTR_0001s15940	POPTR_0003s07260 (11)//POPTR_0001s15940 (11)	scaffold_1:12785600-12790324(-) (11)//scaffold_3:8838877-8842958(+) (11)	NA	Q9Y5K3	Choline-phosphate cytidylyltransferase B	AT2G32260.1	phosphorylcholine cytidylyltransferase 	LOC_Os02g07720.2	"cytidylyltransferase domain containing protein, expressed"	Medtr4g089770.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.219966.1.S1_at	A	A1TS	POPTR_0001s15930	POPTR_0001s15930 (11)	scaffold_1:12783636-12783736(+) (11)	NA	Q9FLC6	RING-H2 finger protein ATL73	AT5G05280.1	RING/U-box superfamily protein 	LOC_Os06g45580.1	"RING-H2 finger protein, putative, expressed"	Medtr4g089780.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219966.1.S1_s_at	A	A1TS	POPTR_0001s15930	POPTR_0001s15930 (11)	scaffold_1:12783722-12783972(+) (11)	NA	Q9FLC6	RING-H2 finger protein ATL73	AT5G05280.1	RING/U-box superfamily protein 	LOC_Os06g45580.1	"RING-H2 finger protein, putative, expressed"	Medtr4g089780.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219968.1.S1_at	A	A1TS	POPTR_0001s15890	POPTR_0001s15890 (11)	scaffold_1:12729432-12729914(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g089730.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219969.1.S1_at	A	A1TS	POPTR_0001s15880	POPTR_0001s15880 (11)	scaffold_1:12724149-12726214(+) (11)	NA	Q10137	Sec14 cytosolic factor	AT5G47510.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os07g27310.1	"CRAL/TRIO domain containing protein, expressed"	Medtr5g012540.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219971.1.S1_at	A	A1TS	POPTR_0001s15860	POPTR_0001s15860 (10)	scaffold_1:12700079-12701455(-) (10)	NA	Q944R7	Protein arginine N-methyltransferase 7	AT4G16570.1	protein arginine methyltransferase 7 	LOC_Os06g01640.1	"arginine N-methyltransferase 7, putative, expressed"	Medtr8g105830.1	"Probable protein arginine N-methyltransferase 7, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219972.1.S1_at	A	A1TS	POPTR_0001s15800	POPTR_0001s15800 (11)	scaffold_1:12638547-12639503(+) (11)	NA	Q75N33	Protein transport protein Sec16B	AT5G47490.1	RGPR-related 	LOC_Os02g01490.1	expressed protein	Medtr8g105690.1	N-6 Adenine-specific DNA methylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219973.1.S1_at	A	A1TS	POPTR_0001s15770	POPTR_0001s15770 (9)	scaffold_1:12595814-12596150(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219974.1.S1_at	A	A2TS	POPTR_0001s15760	POPTR_0547s00200 (11)//POPTR_0001s15760 (11)	scaffold_1:12584955-12585396(+) (11)//scaffold_547:6509-6950(+) (11)	NA	P29136	Metalloendoproteinase 1	AT4G16640.1	Matrixin family protein 	LOC_Os10g40830.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g012770.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.219975.1.S1_at	A	A1TS	POPTR_0001s15750	POPTR_0001s15750 (9)	scaffold_1:12561919-12563168(-) (9)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT4G16650.1	O-fucosyltransferase family protein 	LOC_Os04g46570.1	"growth regulator related protein, putative, expressed"	Medtr8g105620.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219976.1.S1_at	A	A1TS	POPTR_0001s15720	POPTR_0001s15720 (11)	scaffold_1:12540876-12541700(+) (11)	NA	NA	NA	AT5G47380.1	"Protein of unknown function, DUF547 "	LOC_Os10g41040.2	"ternary complex factor MIP1, putative, expressed"	Medtr5g012850.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219978.1.S1_at	A	A2TS	POPTR_0001s15680	POPTR_0001s15680 (10)//POPTR_0384s00200 (9)	scaffold_1:12504452-12508071(-) (11)//scaffold_384:14233-15401(-) (10)	NA	Q5XF59	"3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial"	AT3G60510.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os10g40540.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219979.1.S1_at	A	A1TS	POPTR_0001s15600	POPTR_0001s15600 (11)	scaffold_1:12452198-12454269(-) (11)	NA	O15457	MutS protein homolog 4	AT4G17380.1	MUTS-like protein 4 	LOC_Os07g30240.1	mutS family domain IV containing protein	Medtr5g012980.1	MutS 1 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219980.1.S1_at	A	A1TS	POPTR_0001s15580	POPTR_0001s15580 (11)	scaffold_1:12439775-12440634(+) (11)	NA	P97868	E3 ubiquitin-protein ligase RBBP6	AT5G47430.1	"DWNN domain, a CCHC-type zinc finger "	LOC_Os03g45730.1	"DNA-binding protein-like, putative, expressed"	Medtr8g105530.1	"DNA-binding protein-like, putative "	NA	GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.219981.1.S1_at	A	A1TS	POPTR_0001s15560	POPTR_0001s15560 (11)	scaffold_1:12416408-12416742(+) (11)	NA	NA	NA	AT5G47400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os10g41120.1	expressed protein	Medtr8g105470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219982.1.S1_s_at	A	A2TS	POPTR_0001s15550	POPTR_0001s15550 (11)//POPTR_0003s07700 (11)	scaffold_1:12390588-12390789(+) (11)//scaffold_3:9215900-9216101(+) (11)	NA	Q8LBQ7	Ethylene-responsive transcription factor ERF034	AT2G44940.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43940.1	"AP2 domain containing protein, expressed"	Medtr5g012990.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.219983.1.S1_at	A	A1TS	POPTR_0001s15540	POPTR_0001s15540 (11)	scaffold_1:12380932-12381595(+) (11)	NA	NA	NA	AT5G13620.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os10g10320.1	conserved hypothetical protein	Medtr7g135720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219985.1.S1_at	A	A1TS	POPTR_0001s15520	POPTR_0001s15520 (9)	scaffold_1:12351562-12351893(+) (10)	NA	NA	NA	AT4G17430.1	O-fucosyltransferase family protein 	LOC_Os10g41180.1	expressed protein	Medtr4g157630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219986.1.S1_at	A	A1TS	POPTR_0001s15510	POPTR_0001s15510 (11)	scaffold_1:12349484-12349534(+) (11)	NA	Q869R9	Myb-like protein J	AT5G47390.1	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.219987.1.S1_at	A	A1TS	POPTR_0001s15480	POPTR_0001s15480 (11)	scaffold_1:12296929-12297367(+) (11)	NA	NA	NA	AT4G16790.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os04g46330.1	expressed protein	Medtr8g105280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219988.1.S1_at	A	A1TS	POPTR_0001s15470	POPTR_0001s15470 (11)	scaffold_1:12289436-12289927(-) (11)	NA	Q9LVS3	Pentatricopeptide repeat-containing protein At5g47360	AT5G47360.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g12430.1	"PPR repeat containing protein, putative, expressed"	Medtr4g018840.1	Immunoglobulin/major histocompatibility complex 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219989.1.S1_at	A	A1TS	POPTR_0001s15350	POPTR_0001s15350 (11)	scaffold_1:12175192-12175596(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219990.1.S1_at	A	A1TS	POPTR_0001s15340	POPTR_0001s15340 (10)	scaffold_1:12172117-12173800(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219991.1.S1_at	A	A1TS	POPTR_0001s15310	POPTR_0001s15310 (11)	scaffold_1:12148759-12150077(-) (11)	NA	NA	NA	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os07g07690.2	"PHD-finger domain containing protein, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219992.1.S1_at	A	A1TS	POPTR_0001s15300	POPTR_0001s15300 (11)	scaffold_1:12132125-12132520(-) (11)	NA	O23522	"Phospholipase A1-Ibeta2, chloroplastic"	AT4G16820.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g43700.1	"triacylglycerol lipase like protein, putative, expressed"	Medtr5g013340.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.219993.1.S1_at	A	A1TS	POPTR_0001s15285	POPTR_0001s15285 (10)	scaffold_1:12115453-12116508(-) (11)	NA	Q9M4P3	"Pentatricopeptide repeat-containing protein At4g16835, mitochondrial"	AT4G16835.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g05750.1	"pentatricopeptide, putative, expressed"	Medtr1g046540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219995.1.S1_at	A	A1TS	POPTR_0001s15240	POPTR_0001s15240 (11)	scaffold_1:12075033-12075416(+) (11)	NA	Q9WU81	Sugar phosphate exchanger 2	AT4G17550.1	Major facilitator superfamily protein 	LOC_Os04g46880.2	"transporter, major facilitator family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219996.1.S1_at	A	A1TS	POPTR_0001s15210	POPTR_0001s15210 (9)	scaffold_1:12056422-12056887(-) (9)	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	LOC_Os10g40140.1	"MSP domain containing protein, expressed"	Medtr5g013430.1	Major sperm protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219997.1.S1_at	A	A1TS	POPTR_0001s15190	POPTR_0001s15190 (11)	scaffold_1:12036544-12037855(-) (11)	NA	O00311	Cell division cycle 7-related protein kinase	AT4G16970.1	Protein kinase superfamily protein 	LOC_Os10g41390.1	"protein kinase domain containing protein, expressed"	Medtr5g008910.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.219998.1.S1_at	A	A1TS	POPTR_0001s15160	POPTR_0001s15160 (11)	scaffold_1:11997973-11998456(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219999.1.S1_at	A	A1TS	POPTR_0001s15130	POPTR_0001s15130 (11)	scaffold_1:11978312-11979468(+) (11)	NA	Q38946	Glutamate dehydrogenase 2	AT5G07440.3	glutamate dehydrogenase 2 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22.2.S1_a_at	A	A2TS	POPTR_0001s06000	POPTR_0001s06000 (11)//POPTR_0003s20170 (11)	scaffold_1:4698587-4699970(-) (11)//scaffold_3:18739492-18740995(+) (11)	NA	NA	NA	AT3G08550.1	elongation defective 1 protein / ELD1 protein 	LOC_Os01g13200.1	"abscisic acid insensitive 8, putative, expressed"	Medtr3g026170.1	"ABI8/ELD1/KOB1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22.2.S1_at	A	A1TS	POPTR_0003s20170	POPTR_0003s20170 (9)	scaffold_3:18739424-18741012(+) (9)	NA	NA	NA	AT3G08550.1	elongation defective 1 protein / ELD1 protein 	LOC_Os01g13200.1	"abscisic acid insensitive 8, putative, expressed"	Medtr3g026170.1	"ABI8/ELD1/KOB1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220000.1.S1_at	A	A1TS	POPTR_0001s15120	POPTR_0001s15120 (11)	scaffold_1:11974625-11975162(+) (11)	NA	O65351	Subtilisin-like protease	AT2G19170.1	subtilisin-like serine protease 3 	LOC_Os04g45960.1	"OsSub42 - Putative Subtilisin homologue, expressed"	Medtr8g129630.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	GO:0005618|cell wall||GO:0016020|membrane
PtpAffx.220001.1.S1_at	A	A1TS	POPTR_0001s15110	POPTR_0001s15110 (10)	scaffold_1:11949230-11950280(+) (11)	NA	Q13395	Probable methyltransferase TARBP1	AT4G17610.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os03g01110.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.220002.1.S1_at	A	A1TS	POPTR_0001s15100	POPTR_0001s15100 (11)	scaffold_1:11944950-11945825(+) (11)	NA	NA	NA	AT4G17610.1	tRNA/rRNA methyltransferase (SpoU) family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220003.1.S1_at	A	A2TS	POPTR_0001s15080	POPTR_0001s15080 (11)//POPTR_0003s03160 (11)	scaffold_1:11911197-11911608(-) (11)//scaffold_3:3576340-3576751(+) (11)	NA	B5D5N9	Low affinity cationic amino acid transporter 2	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os04g45950.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.220004.1.S1_at	A	A1TS	POPTR_0001s15070	POPTR_0001s15070 (11)	scaffold_1:11902791-11902961(+) (11)//scaffold_1:11905816-11905986(+) (11)	NA	NA	NA	AT2G44730.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os10g41460.1	"transcription factor like protein, putative, expressed"	Medtr7g092760.1	MADF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220004.1.S1_x_at	A	A1TS	POPTR_0001s15070	POPTR_0001s15070 (11)	scaffold_1:11902492-11902961(+) (11)//scaffold_1:11905517-11905986(+) (11)	NA	NA	NA	AT2G44730.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os10g41460.1	"transcription factor like protein, putative, expressed"	Medtr7g092760.1	MADF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220006.1.S1_at	A	A1TS	POPTR_0003s03190	POPTR_0003s03190 (11)	scaffold_3:3622899-3623272(+) (11)	NA	Q9LTB8	Calcineurin B-like protein 9	AT5G47100.1	calcineurin B-like protein 9 	LOC_Os10g41510.1	"calcineurin B, putative, expressed"	Medtr5g013720.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220007.1.S1_at	A	A1MS	POPTR_0003s03200	POPTR_0003s03200 (9)	scaffold_3:3624737-3625614(+) (9)	NA	B3H672	Pentatricopeptide repeat-containing protein At4g17616	AT4G17616.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g31310.1	"PPR repeat domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220008.1.S1_at	A	A1MS	POPTR_0003s03210	POPTR_0003s03210 (10)	scaffold_3:3627226-3628624(-) (10)	NA	Q8LK56	Transcriptional activator DEMETER	AT5G04560.2	HhH-GPD base excision DNA repair family protein 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220009.1.S1_at	A	A1MS	POPTR_0003s03210	POPTR_0003s03210 (9)	scaffold_3:3629652-3630222(-) (10)	NA	Q8LK56	Transcriptional activator DEMETER	AT5G04560.2	HhH-GPD base excision DNA repair family protein 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220010.1.S1_at	A	A1TS	POPTR_0003s03210	POPTR_0003s03210 (11)	scaffold_3:3630460-3631041(-) (11)	NA	Q8LK56	Transcriptional activator DEMETER	AT5G04560.2	HhH-GPD base excision DNA repair family protein 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220011.1.S1_at	A	A1TS	POPTR_0003s03230	POPTR_0003s03230 (11)	scaffold_3:3650986-3652321(+) (11)	NA	NA	NA	AT5G47090.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g04780.1	"coiled-coil domain-containing protein 97, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220011.1.S1_s_at	A	A1TS	POPTR_0003s03230	POPTR_0003s03230 (11)	scaffold_3:3650672-3652280(+) (11)	NA	NA	NA	AT5G47090.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g04780.1	"coiled-coil domain-containing protein 97, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220012.1.S1_at	A	A1TS	POPTR_0003s03240	POPTR_0003s03240 (11)	scaffold_3:3653271-3654042(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220014.1.S1_at	A	A1TS	POPTR_0003s03260	POPTR_0003s03260 (11)	scaffold_3:3666279-3666888(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220015.1.S1_s_at	A	A1TS	POPTR_0003s03270	POPTR_0003s03270 (11)	scaffold_3:3672925-3673176(+) (11)	NA	Q9SLG9	Phosphatidylinositol-4-phosphate 5-kinase 5	AT4G17080.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os10g41534.3	"ICE-like protease p20 domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220016.1.S1_s_at	A	A1TS	POPTR_0003s03300	POPTR_0003s03300 (11)	scaffold_3:3689159-3690818(+) (11)	NA	Q944A9	Novel plant SNARE 11	AT2G35190.1	novel plant snare 11 	LOC_Os06g50120.1	"novel plant SNARE 11, putative, expressed"	Medtr8g134080.1	Target SNARE coiled-coil region; Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220017.1.S1_s_at	A	A1TS	POPTR_0003s03310	POPTR_0003s03310 (11)	scaffold_3:3704409-3705358(+) (11)	NA	Q9LTC0	Probable receptor-like protein kinase At5g47070	AT5G47070.1	Protein kinase superfamily protein 	LOC_Os09g36320.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g013780.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.220018.1.S1_at	A	A1TS	POPTR_0003s03360	POPTR_0003s03360 (11)	scaffold_3:3733522-3734159(-) (11)	NA	NA	NA	AT4G17140.3	pleckstrin homology (PH) domain-containing protein 	LOC_Os02g27110.1	expressed protein	Medtr5g013980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220019.1.S1_at	A	A1TS	POPTR_0003s03360	POPTR_0003s03360 (9)	scaffold_3:3755741-3756745(-) (10)	NA	NA	NA	AT4G17140.3	pleckstrin homology (PH) domain-containing protein 	LOC_Os02g27110.1	expressed protein	Medtr5g013980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220020.1.S1_at	A	A1TS	POPTR_0001s03140	POPTR_0001s03140 (11)	scaffold_1:2489019-2490213(+) (11)	POPTR_0003s08440 (8)	NA	NA	AT5G47020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g10380.1	"glycine-rich protein, putative, expressed"	Medtr5g014010.1	"glycine-rich protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220022.1.S1_at	A	A1TS	POPTR_0001s03120	POPTR_0001s03120 (11)	scaffold_1:2459110-2459164(-) (11)	NA	Q8WXB1	Protein FAM119A	AT1G73320.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g55250.1	expressed protein	Medtr6g083940.1	"Protein FAM119A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220022.1.S1_s_at	A	A1TS	POPTR_0001s03120	POPTR_0001s03120 (11)	scaffold_1:2459158-2459699(-) (11)	NA	Q8WXB1	Protein FAM119A	AT1G73320.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g55250.1	expressed protein	Medtr6g083940.1	"Protein FAM119A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220023.1.S1_at	A	A1MS	POPTR_0001s03100	POPTR_0001s03100 (11)	scaffold_1:2436233-2436621(+) (11)	NA	Q84Y18	CAX-interacting protein 4	AT2G28910.1	CAX interacting protein 4 	LOC_Os09g01640.1	"CAX-interacting protein 4, putative, expressed"	Medtr1g064960.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.220024.1.S1_at	A	A1TS	POPTR_0001s03080	POPTR_0001s03080 (11)	scaffold_1:2422034-2422536(-) (11)	NA	P38456	Uncharacterized mitochondrial protein ymf11	AT5G46920.1	"Intron maturase, type II family protein "	LOC_Os10g41790.2	"type II intron maturase protein, putative, expressed"	Medtr2g007990.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	GO:0044260|cellular macromolecule metabolic process||GO:0008380|RNA splicing	NA	NA
PtpAffx.220025.1.S1_at	A	A1TS	POPTR_0001s03070	POPTR_0001s03070 (11)	scaffold_1:2420326-2421165(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220027.1.S1_at	A	A1TS	POPTR_0001s03030	POPTR_0001s03030 (11)	scaffold_1:2389243-2389899(+) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g41930.2	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.220028.1.S1_s_at	A	A1TS	POPTR_0001s03010	POPTR_0001s03010 (11)	scaffold_1:2377783-2378995(-) (11)	NA	Q850K7	Expansin-like B1	AT4G17030.1	expansin-like B1 	LOC_Os07g31390.1	"beta-expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220029.1.S1_at	A	A1MS	POPTR_0001s03000	POPTR_0001s03000 (9)	scaffold_1:2373285-2375368(+) (9)	NA	NA	NA	AT1G31870.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os08g08080.1	"BUD13, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220030.1.S1_at	A	A1TS	POPTR_0001s02940	POPTR_0001s02940 (9)	scaffold_1:2330633-2332600(-) (11)	NA	NA	NA	AT5G46560.1	CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os03g01016.2	expressed protein	Medtr5g014190.1	hypothetical protein 	NA	NA	GO:0005639|integral to nuclear inner membrane
PtpAffx.220031.1.S1_at	A	A1TS	POPTR_0001s02930	POPTR_0001s02930 (11)	scaffold_1:2319829-2321435(-) (11)	NA	Q94EJ6	Probable methyltransferase PMT14	AT4G18030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.220032.1.S1_at	A	A1TS	POPTR_0001s02890	POPTR_0001s02890 (9)	scaffold_1:2285706-2286438(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr3g086670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220033.1.S1_at	A	A1TS	POPTR_0001s02880	POPTR_0001s02880 (11)	scaffold_1:2272269-2274211(-) (11)	NA	Q9FUR2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 2"	AT4G18010.2	myo-inositol polyphosphate 5-phosphatase 2 	LOC_Os01g51890.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr5g014290.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220034.1.S1_at	A	A1TS	POPTR_0001s02870	POPTR_0001s02870 (11)	scaffold_1:2269220-2269851(-) (11)	NA	Q9SLH7	Peroxidase 20	AT2G35380.1	Peroxidase superfamily protein 	LOC_Os01g15830.1	"peroxidase precursor, putative, expressed"	Medtr5g014310.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.220035.1.S1_at	A	A1TS	POPTR_0001s02830	POPTR_0001s02830 (11)	scaffold_1:2246513-2247071(+) (11)	NA	NA	NA	AT3G57990.1	unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). 	LOC_Os09g31458.1	expressed protein	Medtr5g014330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220036.1.S1_at	A	A1TS	POPTR_0001s02810	POPTR_0001s02810 (11)	scaffold_1:2227371-2227892(+) (11)	NA	Q9LQL2	Nitrate transporter 1.5	AT1G32450.1	nitrate transporter 1.5 	LOC_Os02g48570.1	"peptide transporter PTR2, putative, expressed"	Medtr8g103070.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.220037.1.S1_at	A	A1TS	POPTR_0001s02780	POPTR_0001s02780 (11)	scaffold_1:2187035-2187213(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220039.1.S1_at	A	A1TS	POPTR_0001s02740	POPTR_0001s02740 (11)	scaffold_1:2162110-2162941(+) (11)	NA	Q9LS25	"Pentatricopeptide repeat-containing protein At5g46580, chloroplastic"	AT5G46580.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os03g63910.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g102950.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220040.1.S1_at	A	A1TS	POPTR_0001s02710	POPTR_0001s02710 (11)	scaffold_1:2138480-2139292(-) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT4G17980.1	NAC domain containing protein 71 	LOC_Os10g42130.1	"no apical meristem protein, putative, expressed"	Medtr5g014470.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.220041.1.S1_at	A	A1TS	POPTR_0001s02700	POPTR_0001s02700 (11)	scaffold_1:2127315-2127594(+) (11)	NA	O49696	Aluminum-activated malate transporter 12	AT4G17970.1	"aluminum-activated, malate transporter 12 "	LOC_Os10g42180.1	"aluminum-activated malate transporter, putative, expressed"	Medtr5g014490.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220042.1.S1_at	A	A1TS	POPTR_0001s02670	POPTR_0001s02670 (11)	scaffold_1:2111143-2111824(-) (11)	NA	Q8AVI4	Leucine-rich repeat protein SHOC-2	AT4G35470.1	plant intracellular ras group-related LRR 4 	LOC_Os10g42190.2	"leucine rich repeat containing protein, expressed"	Medtr8g102800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.220043.1.S1_at	A	A1TS	POPTR_0001s02660	POPTR_0001s02660 (11)	scaffold_1:2106585-2107350(-) (11)	NA	O00167	Eyes absent homolog 2	AT2G35320.1	EYES ABSENT homolog 	LOC_Os06g02028.1	"eyes absent homolog 4, putative, expressed"	Medtr8g102790.1	EYA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220045.1.S1_at	A	A1TS	POPTR_0001s02550	POPTR_0001s02550 (11)	scaffold_1:2038530-2039049(-) (11)	NA	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os10g39440.2	"transporter family protein, putative, expressed"	Medtr3g159920.1	Major facilitator superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220047.1.S1_at	A	A1TS	POPTR_0001s02530	POPTR_0001s02530 (11)	scaffold_1:2028359-2028914(+) (11)	NA	Q9LHS9	Probable transcriptional regulator RABBIT EARS	AT4G17810.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g20930.1	"ZOS5-07 - C2H2 zinc finger protein, expressed"	Medtr5g014570.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.220048.1.S1_at	A	A1TS	POPTR_0001s02520	POPTR_0001s02520 (11)	scaffold_1:1975264-1975712(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT4G17800.1	Predicted AT-hook DNA-binding family protein 	LOC_Os04g50030.1	"DNA binding protein, putative, expressed"	Medtr7g092530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220050.1.S1_at	A	A1TS	POPTR_0001s02480	POPTR_0001s02480 (11)	scaffold_1:1925517-1926303(+) (11)	NA	NA	NA	AT2G35230.1	VQ motif-containing protein 	NA	NA	Medtr8g078580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220052.1.S1_at	A	A1TS	POPTR_0001s02460	POPTR_0001s02460 (11)	scaffold_1:1908404-1908721(+) (11)	NA	NA	NA	AT2G35215.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g078550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220053.1.S1_at	A	A1TS	POPTR_0001s02440	POPTR_0001s02440 (11)	scaffold_1:1892626-1893360(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220054.1.S1_at	A	A1TS	POPTR_0001s02420	POPTR_0001s02420 (11)	scaffold_1:1868686-1869223(-) (11)	NA	Q9FIQ1	Ubiquitin carboxyl-terminal hydrolase 21	AT5G46740.1	ubiquitin-specific protease 21 	LOC_Os06g08530.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr5g030130.2	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.220055.1.S1_at	A	A1TS	POPTR_0001s02410	POPTR_0001s02410 (11)	scaffold_1:1866852-1867704(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220058.1.S1_at	A	A1TS	POPTR_0001s02360	POPTR_0001s02360 (11)	scaffold_1:1781474-1781614(-) (11)	NA	Q7XLY8	E3 ubiquitin-protein ligase Os04g0590900	AT3G03550.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g029880.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220058.1.S1_x_at	A	A1TS	POPTR_0001s02360	POPTR_0001s02360 (11)	scaffold_1:1781474-1781614(-) (11)	NA	Q7XLY8	E3 ubiquitin-protein ligase Os04g0590900	AT3G03550.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g029880.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220059.1.S1_at	A	A1TS	POPTR_0001s02340	POPTR_0001s02340 (10)	scaffold_1:1767100-1767690(+) (11)	NA	O49691	RING-H2 finger protein ATL29	AT4G17920.1	RING/U-box superfamily protein 	LOC_Os09g29310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g084870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220060.1.S1_s_at	A	A1TS	POPTR_0001s02330	POPTR_0001s02330 (11)	scaffold_1:1764568-1764782(+) (11)	NA	Q84UQ3	Zinc finger CCCH domain-containing protein 56	AT1G32360.1	Zinc finger (CCCH-type) family protein 	LOC_Os08g06330.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g078060.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.220061.1.S1_at	A	A1TS	POPTR_0001s02280	POPTR_0001s02280 (11)	scaffold_1:1729598-1730395(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220062.1.S1_at	A	A1TS	POPTR_0001s02250	POPTR_0001s02250 (11)	scaffold_1:1707836-1708098(-) (11)	NA	Q84Y01	Inositol-tetrakisphosphate 1-kinase 1	AT5G16760.1	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os10g42550.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.220063.1.S1_at	A	A1TS	POPTR_0001s02240	POPTR_0001s02240 (11)	scaffold_1:1698033-1698722(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT5G16770.2	myb domain protein 9 	LOC_Os08g37970.1	"MYB family transcription factor, putative, expressed"	Medtr5g029730.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220064.1.S1_at	A	A1TS	POPTR_0001s02220	POPTR_0001s02220 (11)	scaffold_1:1678378-1678838(+) (11)	NA	Q8LPK2	ABC transporter B family member 2	AT4G25960.1	P-glycoprotein 2 	LOC_Os02g46680.1	"multidrug resistance protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.220065.1.S1_s_at	A	A1TS	POPTR_0001s02200	POPTR_0001s02200 (11)	scaffold_1:1661876-1662360(+) (11)	NA	Q8LPK2	ABC transporter B family member 2	AT4G25960.1	P-glycoprotein 2 	LOC_Os02g46680.1	"multidrug resistance protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.220066.1.S1_at	A	A1TS	POPTR_0001s02190	POPTR_0001s02190 (11)	scaffold_1:1639438-1639927(+) (11)	NA	O23617	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5"	AT4G17770.1	trehalose phosphatase/synthase 5 	LOC_Os09g23350.1	"trehalose synthase, putative, expressed"	Medtr4g156760.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.220067.1.S1_at	A	A1TS	POPTR_0001s02180	POPTR_0001s02180 (11)	scaffold_1:1617165-1619541(-) (11)	NA	Q9JI90	E3 ubiquitin-protein ligase RNF14	AT1G32340.1	NDR1/HIN1-like 8 	LOC_Os04g50720.1	"ara54-like RING finger protein, putative, expressed"	Medtr5g029610.1	"Ubiquitin-conjugating enzyme, E2; Zinc finger, RING-type; Zinc finger, C6HC-type; RWD "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.220068.1.S1_at	A	A1TS	POPTR_0001s02170	POPTR_0001s02170 (11)	scaffold_1:1605959-1606527(-) (11)	NA	Q9LFC5	Pentatricopeptide repeat-containing protein At5g01110	AT5G01110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g42354.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g029600.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220069.1.S1_at	A	A1TS	POPTR_0001s02160	POPTR_0001s02160 (11)	scaffold_1:1599876-1600435(-) (11)	NA	Q9SSR4	Pentatricopeptide repeat-containing protein At1g52620	AT1G52620.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g04295.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr2g126170.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220070.1.S1_at	A	A1TS	POPTR_0001s02130	POPTR_0001s02130 (11)	scaffold_1:1584123-1584720(-) (11)	NA	Q8RXG3	Mitogen-activated protein kinase kinase 5	AT1G32320.1	MAP kinase kinase 10 	LOC_Os03g12390.1	"STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g080600.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.220071.1.S1_at	A	A1MS	POPTR_0001s02120	POPTR_0001s02120 (10)	scaffold_1:1580834-1580937(+) (10)	NA	NA	NA	AT1G32310.1	unknown protein; Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g029560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220072.1.S1_at	A	A1TS	POPTR_0001s02030	POPTR_0001s02030 (11)	scaffold_1:1525956-1526659(-) (11)	NA	Q9FJS2	Homeobox-leucine zipper protein HDG5	AT5G46880.1	homeobox-7 	LOC_Os10g42490.2	"homeobox and START domains containing protein, putative, expressed"	Medtr5g029220.1	Lipid-binding START 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.220073.1.S1_at	A	A1TS	POPTR_0001s02020	POPTR_0001s02020 (11)	scaffold_1:1495658-1495846(-) (11)	NA	Q80Y84	Lysine-specific demethylase 5B	AT5G46910.1	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os10g42690.1	"jmjC domain containing protein, expressed"	Medtr5g029270.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN "	NA	NA	GO:0005634|nucleus
PtpAffx.220074.1.S1_at	A	A1TS	POPTR_0001s02010	POPTR_0001s02010 (11)	scaffold_1:1478615-1482229(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G32240.1	Homeodomain-like superfamily protein 	LOC_Os08g06370.1	"MYB family transcription factor, putative, expressed"	Medtr5g029360.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220075.1.S1_at	A	A1TS	POPTR_0001s01940	POPTR_0001s01940 (11)	scaffold_1:1425458-1426203(+) (11)	NA	NA	NA	AT3G12890.1	activator of spomin::LUC2 	LOC_Os03g04620.1	"CCT motif family protein, expressed"	Medtr2g087960.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220076.1.S1_at	A	A1TS	POPTR_0001s01920	POPTR_0001s01920 (11)	scaffold_1:1384891-1389467(-) (11)	NA	Q7ZVZ7	Abhydrolase domain-containing protein FAM108C1	AT1G32190.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g06420.2	"abhydrolase domain-containing protein FAM108C1, putative, expressed"	Medtr5g029090.1	"Abhydrolase domain-containing protein FAM108C1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220077.1.S1_at	A	A1MA	POPTR_0001s01890	POPTR_0001s01890 (9)	scaffold_1:1383385-1383717(-) (9)	NA	P37707	B2 protein	AT5G61910.3	DCD (Development and Cell Death) domain protein 	LOC_Os02g51140.1	"N-rich protein, putative, expressed"	Medtr3g151330.1	Kelch related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220078.1.S1_at	A	A1TS	POPTR_0001s01890	POPTR_0001s01890 (11)	scaffold_1:1379709-1380892(+) (11)	NA	P37707	B2 protein	AT5G61910.3	DCD (Development and Cell Death) domain protein 	LOC_Os02g51140.1	"N-rich protein, putative, expressed"	Medtr3g151330.1	Kelch related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220079.1.S1_at	A	A1TS	POPTR_0001s01880	POPTR_0001s01880 (11)	scaffold_1:1362078-1362578(-) (11)	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.220080.1.S1_s_at	A	A1TS	POPTR_0001s01800	POPTR_0001s01800 (11)	scaffold_1:1311270-1311798(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220081.1.S1_at	A	A1TS	POPTR_0001s01780	POPTR_0001s01780 (11)	scaffold_1:1302130-1302683(+) (11)	NA	Q9C6T2	Pentatricopeptide repeat-containing protein At1g31920	AT1G31920.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g46980.1	"pentatricopeptide, putative, expressed"	Medtr5g028120.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220082.1.S1_at	A	A1TS	POPTR_0001s01750	POPTR_0001s01750 (11)	scaffold_1:1280167-1280548(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220083.1.S1_s_at	A	A1TS	POPTR_0001s01730	POPTR_0001s01730 (11)	scaffold_1:1265444-1266152(-) (11)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011210.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.220084.1.S1_at	A	A1TS	POPTR_0001s01720	POPTR_0001s01720 (11)	scaffold_1:1260924-1261013(-) (11)	NA	NA	NA	AT5G45610.1	protein dimerizations 	NA	NA	Medtr5g028070.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220084.1.S1_s_at	A	A1TS	POPTR_0001s01720	POPTR_0001s01720 (11)	scaffold_1:1261175-1262660(-) (11)	NA	NA	NA	AT5G45610.1	protein dimerizations 	NA	NA	Medtr5g028070.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220086.1.S1_at	A	A1TS	POPTR_0001s01690	POPTR_0001s01690 (9)	scaffold_1:1231235-1231554(-) (10)//scaffold_1:1250709-1251022(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220089.1.S1_s_at	A	A1TS	POPTR_0001s03710	POPTR_0001s03710 (11)	scaffold_1:2981647-2982078(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os07g40810.1	"NBS-LRR type disease resistance protein, putative"	Medtr5g028060.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.220090.1.S1_at	A	A1TS	POPTR_0001s03700	POPTR_0001s03700 (11)	scaffold_1:2974166-2975077(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220093.1.S1_at	A	A1TS	POPTR_0001s01650	POPTR_0001s01650 (11)	scaffold_1:1230539-1231018(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220094.1.S1_at	A	A1TS	POPTR_0001s01620	POPTR_0001s01620 (11)	scaffold_1:1213837-1214199(+) (11)	NA	NA	NA	AT2G35550.1	basic pentacysteine 7 	LOC_Os10g02584.3	"GAGA-binding protein, putative, expressed"	Medtr4g151960.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220095.1.S1_at	A	A1TS	POPTR_0001s01610	POPTR_0001s01610 (9)	scaffold_1:1207357-1207882(+) (9)	NA	Q03516	Uncharacterized protein RSN1	AT1G32090.1	early-responsive to dehydration stress protein (ERD4) 	LOC_Os10g42820.1	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g027680.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.220095.1.S1_x_at	A	A1TS	POPTR_0001s01610	POPTR_0001s01610 (11)	scaffold_1:1207302-1208008(+) (11)	NA	Q03516	Uncharacterized protein RSN1	AT1G32090.1	early-responsive to dehydration stress protein (ERD4) 	LOC_Os10g42820.1	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g027680.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.220096.1.S1_at	A	A1TS	POPTR_0001s01600	POPTR_0001s01600 (11)	scaffold_1:1192857-1193451(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g02370.1	expressed protein	Medtr5g027630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220097.1.S1_at	A	A1TS	POPTR_0001s01590	POPTR_0001s01590 (11)	scaffold_1:1184429-1186791(-) (11)	NA	NA	NA	AT5G45590.1	Ribosomal protein L35 	LOC_Os10g42860.1	"ribosomal protein L35, putative, expressed"	Medtr5g027640.1	Ribosomal protein L35 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.220098.1.S1_at	A	A1TS	POPTR_0001s01580	POPTR_0001s01580 (11)	scaffold_1:1171805-1175823(-) (11)	NA	Q8IUF1	COBW domain-containing protein 2	AT1G80480.1	plastid transcriptionally active 17 	LOC_Os04g51100.1	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220099.1.S1_at	A	A1TS	POPTR_0001s01540	POPTR_0001s01540 (11)	scaffold_1:1151356-1152242(-) (11)	NA	P52581	Isoflavone reductase homolog	AT1G32100.1	pinoresinol reductase 1 	LOC_Os12g16220.2	"nmrA-like family domain containing protein, expressed"	Medtr5g027470.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.220100.1.S1_at	A	A1TS	POPTR_0001s01520	POPTR_0001s01520 (11)	scaffold_1:1145018-1145330(-) (11)	NA	Q9ZQ95	Flavonol-3-O-glycoside-7-O-glucosyltransferase 1	AT2G15490.1	UDP-glycosyltransferase 73B4 	LOC_Os01g08100.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr5g027420.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220101.1.S1_at	A	A1TS	POPTR_0001s01510	POPTR_0001s01510 (11)	scaffold_1:1139660-1140205(+) (11)	NA	NA	NA	AT4G19040.1	ENHANCED DISEASE RESISTANCE 2 	LOC_Os10g31770.1	"START domain containing protein, expressed"	Medtr5g027400.2	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220101.1.S1_x_at	A	A1TS	POPTR_0001s01510	POPTR_0001s01510 (11)	scaffold_1:1138347-1140205(+) (11)	NA	NA	NA	AT4G19040.1	ENHANCED DISEASE RESISTANCE 2 	LOC_Os10g31770.1	"START domain containing protein, expressed"	Medtr5g027400.2	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220102.1.S1_at	A	A1TS	POPTR_0001s01480	POPTR_0001s01480 (11)	scaffold_1:1098473-1100457(-) (11)	NA	NA	NA	AT4G37740.1	growth-regulating factor 2 	LOC_Os02g47280.2	"growth-regulating factor, putative, expressed"	Medtr5g027250.1	QLQ 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.220102.1.S1_s_at	A	A1TS	POPTR_0001s01480	POPTR_0001s01480 (11)	scaffold_1:1100303-1101678(-) (11)	POPTR_0003s10000 (6)	NA	NA	AT4G37740.1	growth-regulating factor 2 	LOC_Os02g47280.2	"growth-regulating factor, putative, expressed"	Medtr5g027250.1	QLQ 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.220103.1.S1_at	A	A1TS	POPTR_0001s01470	POPTR_0001s01470 (11)	scaffold_1:1096876-1097325(+) (11)	NA	Q5ZIN1	Nuclear migration protein nudC	AT4G27890.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220105.1.S1_at	A	A1TS	POPTR_0001s01450	POPTR_0001s01450 (11)	scaffold_1:1088906-1089183(-) (11)	NA	Q39255	SKP1-like protein 1A	AT1G75950.1	S phase kinase-associated protein 1 	LOC_Os09g36830.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr7g021210.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.220106.1.S1_at	A	A1TS	POPTR_0001s01440	POPTR_0001s01440 (10)	scaffold_1:1083783-1085358(-) (10)	NA	NA	NA	NA	NA	LOC_Os08g08230.1	"kinesin-like protein, identical, putative, expressed"	Medtr5g026950.1	"Kinesin-like protein, identical, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220107.1.S1_at	A	A1TS	POPTR_0001s01430	POPTR_0001s01430 (11)	scaffold_1:1080373-1080656(-) (11)	NA	NA	NA	AT3G01430.1	BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g50940.1	"NHL repeat-containing protein, putative, expressed"	AC233671_7.1	"NHL repeat-containing protein, related AC233671.1 28492-28962 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220108.1.S1_at	A	A1TS	POPTR_0001s01410	POPTR_0001s01410 (10)	scaffold_1:1049625-1050533(-) (10)	NA	Q17TI5	Protein BREVIS RADIX	AT1G31880.1	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220109.1.S1_at	A	A1TS	POPTR_0001s01390	POPTR_0001s01390 (11)	scaffold_1:1040319-1041566(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220110.1.S1_at	A	A1TS	POPTR_0001s01360	POPTR_0001s01360 (11)	scaffold_1:997182-997543(+) (11)	NA	Q5ZJJ2	Replication protein A 70 kDa DNA-binding subunit	AT5G45400.1	Replication factor-A protein 1-related 	LOC_Os05g02040.1	"RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.220111.1.S1_at	A	A1TS	POPTR_0001s01250	POPTR_0001s01250 (11)	scaffold_1:965918-966472(+) (11)	NA	Q9M2C8	Pentatricopeptide repeat-containing protein At3g61360	AT3G61360.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g47950.1	"tetratricopeptide-like helical, putative, expressed"	Medtr7g009050.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220112.1.S1_s_at	A	A5TS	POPTR_0001s01240	POPTR_0004s06890 (11)//POPTR_0016s09710 (11)//POPTR_0011s08310 (11)//POPTR_0013s04100 (11)//POPTR_0001s01240 (11)	scaffold_1:963063-963324(+) (11)//scaffold_11:9574966-9575227(+) (11)//scaffold_13:2724077-2724338(-) (11)//scaffold_16:7844415-7844676(+) (11)//scaffold_4:5624816-5625077(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220113.1.S1_at	A	A1TS	POPTR_0001s01210	POPTR_0001s01210 (11)	scaffold_1:941644-942123(-) (11)	NA	O80450	Trihelix transcription factor GT-3b	AT2G38250.1	Homeodomain-like superfamily protein 	LOC_Os04g51320.1	"transcription factor TF2, putative, expressed"	Medtr5g026680.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220114.1.S1_x_at	A	A1TS	POPTR_0001s01180	POPTR_0001s01180 (11)	scaffold_1:928464-929030(-) (11)	NA	Q9C801	Protein MOS2	AT1G33520.1	D111/G-patch domain-containing protein 	LOC_Os03g14860.1	"G-patch domain containing protein, expressed"	Medtr1g046100.1	D111/G-patch; KOW 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.220115.1.S1_at	A	A1TS	POPTR_0001s01170	POPTR_0001s01170 (11)	scaffold_1:915385-915547(-) (11)	NA	Q9F234	Alpha-glucosidase 2	AT3G23640.2	heteroglycan glucosidase 1 	LOC_Os07g23880.1	"glycosyl hydrolase, family 31, putative, expressed"	Medtr5g026760.1	"Vitamin K-dependent carboxylation/gamma-carboxyglutamic region; Glycoside hydrolase, family 31 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.220116.1.S1_at	A	A1TS	POPTR_0001s01160	POPTR_0001s01160 (11)	scaffold_1:897062-898327(-) (11)	NA	Q9SU30	F-box protein CPR30	AT1G64930.1	"cytochrome P450, family 87, subfamily A, polypeptide 7 "	LOC_Os01g24810.1	"cytochrome P450, putative"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220117.1.S1_at	A	A1TS	POPTR_0001s01150	POPTR_0001s01150 (11)	scaffold_1:895921-896563(+) (11)	NA	NA	NA	AT4G28050.1	tetraspanin7 	LOC_Os08g34460.1	"tetraspanin family protein, putative, expressed"	Medtr8g115550.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.220118.1.S1_at	A	A1TS	POPTR_0001s01140	POPTR_0001s01140 (11)	scaffold_1:892791-893517(-) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g021800.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220119.1.S1_at	A	A1TS	POPTR_0001s01090	POPTR_0001s01090 (11)	scaffold_1:855903-857699(-) (11)	NA	Q9ZPR1	Cell division control protein 48 homolog B	AT2G03670.1	cell division cycle 48B 	LOC_Os04g42110.1	"cell division control protein 48 homolog B, putative, expressed"	Medtr7g105950.2	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.220120.1.S1_at	A	A1TS	POPTR_0001s01070	POPTR_0001s01070 (11)	scaffold_1:845411-846184(-) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT1G61590.1	Protein kinase superfamily protein 	LOC_Os03g24930.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g026500.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.220121.1.S1_at	A	A1TS	POPTR_0001s01060	POPTR_0001s01060 (11)	scaffold_1:835839-836247(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os04g40440.1	expressed protein	Medtr3g167060.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.220122.1.S1_at	A	A1TS	POPTR_0001s01050	POPTR_0001s01050 (11)	scaffold_1:833059-833657(-) (11)	NA	D1BZ82	D-inositol-3-phosphate glycosyltransferase	AT4G19460.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g46430.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr8g086410.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.220123.1.S1_at	A	A1TS	POPTR_0001s01040	POPTR_0001s01040 (11)	scaffold_1:831942-832630(+) (11)	NA	NA	NA	AT5G45275.1	Major facilitator superfamily protein 	LOC_Os11g01590.1	"nodulin, putative, expressed"	Medtr5g026470.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220124.1.S1_at	A	A1TS	POPTR_0001s01020	POPTR_0001s01020 (11)	scaffold_1:807911-808216(+) (11)	NA	O24645	Anthranilate N-benzoyltransferase protein 1	AT1G31490.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g15709.1	"transferase family protein, putative"	Medtr5g026450.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.220126.1.S1_at	A	A1TS	POPTR_0001s01010	POPTR_0001s01010 (11)	scaffold_1:801208-802416(+) (11)	NA	NA	NA	AT4G27870.1	Vacuolar iron transporter (VIT) family protein 	LOC_Os06g01440.1	"integral membrane protein, putative, expressed"	Medtr5g077300.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220127.1.S1_at	A	A1TS	POPTR_0001s01000	POPTR_0001s01000 (11)	scaffold_1:796534-797298(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220128.1.S1_at	A	A1TS	POPTR_0001s00970	POPTR_0001s00970 (11)	scaffold_1:778732-779283(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140400.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.220129.1.S1_at	A	A1TS	POPTR_0001s00960	POPTR_0001s00960 (11)	scaffold_1:777814-778314(-) (11)	NA	P83326	Pectinesterase inhibitor	AT4G02250.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	NA	NA	Medtr4g096470.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.220130.1.S1_at	A	A1TS	POPTR_0001s00950	POPTR_0001s00950 (11)	scaffold_1:769172-769731(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140360.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.220131.1.S1_at	A	A1TS	POPTR_0001s00930	POPTR_0001s00930 (11)	scaffold_1:753737-754002(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220132.1.S1_at	A	A1TS	POPTR_0001s00920	POPTR_0001s00920 (10)	scaffold_1:748464-749030(+) (11)	NA	Q06003	Protein goliath	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os05g32350.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g026380.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220133.1.S1_at	A	A1TS	POPTR_0001s00900	POPTR_0001s00900 (11)	scaffold_1:740368-740588(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220134.1.S1_at	A	A1TS	POPTR_0001s00890	POPTR_0001s00890 (11)	scaffold_1:735946-736312(-) (11)	NA	Q9FGN8	Protein DYAD	AT5G51330.1	SWITCH1 	LOC_Os03g44760.1	"SWI1, putative, expressed"	AC235756_28.1	"SWI1, related AC235756.1 180586-176312 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220134.1.S1_x_at	A	A1TS	POPTR_0001s00890	POPTR_0001s00890 (11)	scaffold_1:735952-736312(-) (11)	NA	Q9FGN8	Protein DYAD	AT5G51330.1	SWITCH1 	LOC_Os03g44760.1	"SWI1, putative, expressed"	AC235756_28.1	"SWI1, related AC235756.1 180586-176312 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220135.1.S1_at	A	A1TS	POPTR_0001s00880	POPTR_0001s00880 (11)	scaffold_1:728675-730836(+) (11)	NA	Q0A5W2	8-amino-7-oxononanoate synthase	AT5G04620.2	biotin F 	LOC_Os01g53450.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr3g009380.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.220136.1.S1_s_at	A	A1TS	POPTR_0001s00870	POPTR_0001s00870 (11)	scaffold_1:720475-720825(-) (11)	NA	Q9C971	Gibberellin 3-beta-dioxygenase 4	AT5G51310.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os10g37899.1	"transposon protein, putative, unclassified, expressed"	Medtr7g087320.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220137.1.S1_at	A	A1TS	POPTR_0001s00830	POPTR_0001s00830 (11)	scaffold_1:683873-685975(-) (11)	NA	Q54IV7	Protein RFT1 homolog	AT5G07630.1	lipid transporters 	LOC_Os07g30250.1	"RFT1, putative, expressed"	NA	NA	GO:0006869|lipid transport||GO:0010876|lipid localization	GO:0005319|lipid transporter activity	GO:0016021|integral to membrane
PtpAffx.220138.1.S1_at	A	A1TS	POPTR_0001s00830	POPTR_0001s00830 (11)	scaffold_1:682506-682696(-) (11)	NA	Q54IV7	Protein RFT1 homolog	AT5G07630.1	lipid transporters 	LOC_Os07g30250.1	"RFT1, putative, expressed"	NA	NA	GO:0006869|lipid transport||GO:0010876|lipid localization	GO:0005319|lipid transporter activity	GO:0016021|integral to membrane
PtpAffx.220139.1.S1_at	A	A1TS	POPTR_0001s00810	POPTR_0001s00810 (11)	scaffold_1:662057-663452(+) (11)	NA	NA	NA	AT4G25190.1	Family of unknown function (DUF566)  	LOC_Os09g25500.1	expressed protein	Medtr8g144970.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220140.1.S1_at	A	A1TS	POPTR_0001s00800	POPTR_0001s00800 (11)	scaffold_1:657001-657757(+) (11)	NA	Q42430	Zinc finger protein 1	AT1G02030.1	C2H2-like zinc finger protein 	LOC_Os10g40660.1	"ZOS10-07 - C2H2 zinc finger protein, expressed"	Medtr8g105670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.220141.1.S1_at	A	A1TS	POPTR_0001s00770	POPTR_0001s00770 (11)	scaffold_1:629910-630471(+) (11)	NA	P42654	14-3-3-like protein B	AT2G42590.3	general regulatory factor 9 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr4g134620.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.220143.1.S1_at	A	A1MS	POPTR_0001s00760	POPTR_0001s00760 (9)	scaffold_1:620506-621995(-) (9)	NA	NA	NA	AT1G76520.2	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	Medtr8g087050.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.220144.1.S1_at	A	A1TS	POPTR_0001s00750	POPTR_0001s00750 (11)	scaffold_1:618202-619613(+) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT5G62420.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os03g13390.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g097770.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.220146.1.S1_at	A	A1TS	POPTR_0001s00710	POPTR_0001s00710 (10)	scaffold_1:589338-590334(+) (11)	NA	Q9C5Y4	Structural maintenance of chromosomes protein 2-1	AT5G62410.1	structural maintenance of chromosomes 2 	LOC_Os01g67740.1	"chromosome segregation protein, putative, expressed"	Medtr8g087350.1	Prefoldin; SMCs flexible hinge 	GO:0016032|viral reproduction||GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0005694|chromosome
PtpAffx.220147.1.S1_at	A	A1TS	POPTR_0001s00700	POPTR_0001s00700 (10)	scaffold_1:579038-579461(+) (11)	NA	Q66GP9	Nitric oxide synthase 1	AT3G47450.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g01440.1	"nitric oxide synthase 1, putative, expressed"	Medtr2g071140.1	"Nitric oxide synthase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220148.1.S1_at	A	A1TS	POPTR_0001s00690	POPTR_0001s00690 (11)	scaffold_1:572129-572773(+) (11)	NA	Q9STX9	Probable aquaporin TIP5-1	AT3G47440.1	tonoplast intrinsic protein 5;1 	LOC_Os04g46490.1	"aquaporin protein, putative, expressed"	Medtr2g071110.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.220149.1.S1_at	A	A1TS	POPTR_0001s00680	POPTR_0001s00680 (11)	scaffold_1:568355-569556(+) (11)	NA	Q86A88	"Dynein light chain, cytoplasmic"	AT5G20110.1	Dynein light chain type 1 family protein 	LOC_Os04g38880.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr8g119810.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.220150.1.S1_at	A	A1TS	POPTR_0001s00670	POPTR_0001s00670 (11)	scaffold_1:567572-567775(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220152.1.S1_at	A	A2TS	POPTR_0001s00630	POPTR_0001s00630 (11)//POPTR_0003s10870 (11)	scaffold_1:541749-542078(-) (11)//scaffold_3:11727644-11727998(+) (10)	NA	Q58CV5	Sugar phosphate exchanger 2	AT3G47420.1	phosphate starvation-induced gene 3 	LOC_Os04g46880.2	"transporter, major facilitator family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220166.1.S1_at	A	A1MS	POPTR_0012s11900	POPTR_0012s11900 (10)	scaffold_12:12255733-12255802(-) (10)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.220167.1.S1_s_at	A	A1TS	POPTR_0012s11890	POPTR_0012s11890 (11)	scaffold_12:12249232-12249464(+) (11)	NA	NA	NA	AT4G19650.1	Mitochondrial transcription termination factor family protein 	LOC_Os08g40630.2	"mTERF domain containing protein, expressed"	Medtr5g092160.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220180.1.S1_at	A	A2TS	POPTR_0017s01660	POPTR_0096s00220 (11)//POPTR_0017s01660 (11)	scaffold_17:1185710-1186228(-) (11)//scaffold_96:40374-40892(+) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.220187.1.S1_at	A	A1TS	POPTR_0107s00270	POPTR_0107s00270 (9)	scaffold_107:48172-48542(+) (9)	NA	O64477	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	AT2G19130.1	S-locus lectin protein kinase family protein 	LOC_Os01g66610.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g103080.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.220194.1.S1_s_at	A	A3TS	POPTR_0003s05310	POPTR_0003s05310 (11)//POPTR_0109s00230 (11)//POPTR_0003s05340 (10)	scaffold_109:16163-16562(-) (11)//scaffold_109:48268-48664(-) (11)//scaffold_3:6552634-6553027(+) (11)//scaffold_3:6603554-6603953(+) (10)	NA	Q54I39	IST1-like protein	AT1G79910.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os02g06430.1	"DUF292 domain containing protein, expressed"	Medtr4g158790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220195.1.S1_s_at	A	A2TS	POPTR_0109s00230	POPTR_0109s00230 (11)//POPTR_0003s05310 (9)	scaffold_109:51300-51589(-) (11)//scaffold_3:6549667-6549956(+) (11)	NA	Q54I39	IST1-like protein	AT1G79910.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os02g06430.1	"DUF292 domain containing protein, expressed"	Medtr4g158790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220200.1.S1_at	A	A1MS	POPTR_0014s18950	POPTR_0014s18950 (10)	scaffold_14:16561618-16561689(-) (10)	NA	Q9SRT3	Probable xyloglucan glycosyltransferase 6	AT3G07330.1	Cellulose-synthase-like C6 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr8g012660.1	"Glycosyl transferase, family 2; Inorganic pyrophosphatase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220204.1.S1_s_at	A	A1TS	POPTR_0010s05920	POPTR_0010s05920 (11)	scaffold_10:7347184-7347773(-) (11)	NA	NA	NA	AT1G24560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species: Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source: NCBI BLink). 	LOC_Os09g39200.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220211.1.S1_s_at	A	A2TS	POPTR_0005s04960	POPTR_0005s04960 (11)//POPTR_0005s04990 (11)	scaffold_5:3315080-3316299(-) (11)//scaffold_5:3328011-3329246(-) (11)	NA	O81155	"Cysteine synthase, chloroplastic/chromoplastic"	AT3G04940.1	cysteine synthase D1 	LOC_Os01g74650.3	"cysteine synthase, mitochondrial precursor, putative, expressed"	Medtr1g096600.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.220213.1.S1_s_at	A	A1TS	POPTR_0011s08580	POPTR_0011s08580 (11)	scaffold_11:10240291-10240444(-) (11)//scaffold_11:10316232-10316385(-) (11)	NA	NA	NA	AT5G55580.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g39430.1	"mTERF family protein, expressed"	Medtr5g102090.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220221.1.S1_at	A	A1TS	POPTR_0304s00200	POPTR_0304s00200 (11)	scaffold_304:10517-10658(-) (11)//scaffold_5:7681182-7681323(-) (11)	NA	Q7XA86	Probable S-acyltransferase At3g51390	AT3G51390.1	DHHC-type zinc finger family protein 	LOC_Os12g29560.1	"DHHC zinc finger domain containing protein, expressed"	Medtr5g023180.1	"Zinc finger, DHHC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220226.1.S1_at	A	A1TS	POPTR_0003s19890	POPTR_0003s19890 (11)	scaffold_178:889-1512(+) (10)//scaffold_3:18484094-18484662(-) (9)//scaffold_3:18516307-18516927(-) (11)//scaffold_3:18579963-18580526(-) (10)	POPTR_0003s19940 (7)//POPTR_0178s00200 (7)//POPTR_0001s06240 (6)//POPTR_0003s19860 (6)	NA	NA	AT3G54500.4	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.2). 	LOC_Os01g31360.6	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220237.1.S1_at	A	A1TS	POPTR_0001s47750	POPTR_0001s47750 (11)	scaffold_1:47954937-47955214(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220238.1.S1_at	A	A1TS	POPTR_0001s47770	POPTR_0001s47770 (11)	scaffold_1:47989266-47989641(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220248.1.S1_s_at	A	A1TS	POPTR_0001s42410	POPTR_0001s42410 (11)	scaffold_1:42376321-42376873(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220251.1.S1_at	A	A1TS	POPTR_0005s03130	POPTR_0005s03130 (11)	scaffold_5:2062245-2063050(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05960.1	"receptor kinase, putative, expressed"	Medtr3g123020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.220252.1.S1_at	A	A1TS	POPTR_0005s03140	POPTR_0005s03140 (11)	scaffold_5:2066057-2066339(-) (11)	NA	NA	NA	AT2G14080.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.220252.1.S1_x_at	A	A1TS	POPTR_0005s03140	POPTR_0005s03140 (11)	scaffold_5:2066054-2066378(-) (11)	NA	NA	NA	AT2G14080.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.220254.1.S1_at	A	A1MS	POPTR_0005s03520	POPTR_0005s03520 (11)	scaffold_5:2365903-2366543(-) (11)	NA	Q6NYY9	Transmembrane protein 49	AT4G14950.1	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220254.1.S1_s_at	A	A1TS	POPTR_0005s03520	POPTR_0005s03520 (11)	scaffold_5:2366102-2366182(-) (11)	NA	Q6NYY9	Transmembrane protein 49	AT4G14950.1	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220256.1.S1_s_at	A	A1TS	POPTR_0008s18350	POPTR_0008s18350 (11)	scaffold_8:12319847-12320278(-) (11)	NA	P25803	Vignain	AT5G50260.1	Cysteine proteinases superfamily protein 	LOC_Os11g14900.5	"thiol protease SEN102 precursor, putative, expressed"	AC235753_6.1	"Peptidase C1A, papain; AC235753.1 34826-37135 E EGN_Mt090430 200"	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.220264.1.S1_at	A	A1TS	POPTR_0004s11000	POPTR_0004s11000 (11)	scaffold_4:9594515-9594961(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220265.1.S1_at	A	A1TS	POPTR_0004s10990	POPTR_0004s10990 (11)	scaffold_4:9563133-9563661(-) (11)	NA	NA	NA	AT3G30530.1	basic leucine-zipper 42 	LOC_Os02g49560.1	"bZIP transcription factor domain containing protein, expressed"	AC146721_11.1	"bZIP transcription factor, bZIP_1 AC146721.7 56450-55611 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.220275.1.S1_at	A	A1TS	POPTR_0001s26370	POPTR_0001s26370 (11)	scaffold_1:25408481-25408984(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220276.1.S1_s_at	A	A3TS	POPTR_0015s06350	POPTR_0015s06390 (11)//POPTR_0015s06350 (11)//POPTR_0015s06380 (11)	scaffold_15:7045507-7046099(-) (11)//scaffold_15:7088161-7088753(-) (11)//scaffold_15:7096262-7096854(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220277.1.S1_s_at	A	A2TS	POPTR_0015s06360	POPTR_0015s06360 (11)//POPTR_0015s06400 (11)	scaffold_15:7047555-7048382(+) (11)//scaffold_15:7098310-7099137(+) (11)	NA	NA	NA	AT1G73890.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g07100.1	"LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g105470.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220286.1.S1_at	A	A1TS	POPTR_0005s04410	POPTR_0005s04410 (11)	scaffold_5:2961570-2961788(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220287.1.S1_s_at	A	A1TS	POPTR_0005s04380	POPTR_0005s04380 (11)	scaffold_5:2897860-2897897(+) (10)//scaffold_5:2954927-2954964(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220289.1.S1_at	A	A1TS	POPTR_0005s04360	POPTR_0005s04360 (11)	scaffold_5:2933944-2933981(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220289.1.S1_x_at	A	A1TS	POPTR_0005s04360	POPTR_0005s04360 (10)	scaffold_5:2933864-2934416(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220290.1.S1_s_at	A	A3TS	POPTR_0005s04350	POPTR_0005s04350 (11)//POPTR_0008s15300 (11)//POPTR_0019s12970 (11)	scaffold_19:13990344-13990645(+) (11)//scaffold_5:2920817-2921127(-) (11)//scaffold_8:10208348-10208649(+) (11)	NA	NA	NA	AT3G22450.1	Ribosomal L18p/L5e family protein 	LOC_Os10g34320.1	"ribosomal L18p/L5e family protein, expressed"	Medtr5g006380.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220291.1.S1_at	A	A2TS	POPTR_0005s04330	POPTR_0019s12980 (11)//POPTR_0005s04330 (11)	scaffold_19:13993043-13993233(-) (11)//scaffold_5:2906559-2906749(+) (11)	POPTR_0005s04390 (8)	NA	NA	NA	NA	NA	NA	Medtr1g043270.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220293.1.S1_s_at	A	A1MS	POPTR_0005s04360	POPTR_0005s04360 (11)	scaffold_5:2934363-2934417(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220295.1.S1_s_at	A	A1TS	POPTR_0001s01600	POPTR_0001s01600 (11)	scaffold_1:1193766-1194286(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g02370.1	expressed protein	Medtr5g027630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2203.2.A1_at	A	A1TS	POPTR_0009s04500	POPTR_0009s04500 (11)	scaffold_9:4841763-4842266(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.2203.3.S1_at	A	A1TS	POPTR_0006s09610	POPTR_0006s09610 (11)	scaffold_6:7058781-7059320(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.220309.1.S1_at	A	A1TS	POPTR_0014s00520	POPTR_0014s00520 (11)	scaffold_14:445534-445652(+) (11)	NA	NA	NA	AT1G16770.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 103 Blast hits to 103 proteins in 50 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 65; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g04780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220310.1.S1_at	A	A1TS	POPTR_0014s00530	POPTR_0014s00530 (11)	scaffold_14:464902-465108(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220310.1.S1_x_at	A	A1TS	POPTR_0014s00530	POPTR_0014s00530 (11)	scaffold_14:464902-465182(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220311.1.S1_at	A	A1TS	POPTR_0014s00536	POPTR_0014s00536 (11)	scaffold_14:486685-487213(+) (11)	NA	Q7XBQ9	Disease resistance protein RGA2	NA	NA	LOC_Os05g23990.1	"rp3 protein, putative, expressed"	Medtr5g079290.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.220314.1.S1_at	A	A1TS	POPTR_0014s00560	POPTR_0014s00560 (10)	scaffold_14:512970-513969(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220316.1.S1_at	A	A1TS	POPTR_0014s00590	POPTR_0014s00590 (10)	scaffold_14:519397-520105(+) (11)	NA	NA	NA	AT1G16770.1	unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g04780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220343.1.S1_at	A	A1TS	POPTR_0003s20630	POPTR_0003s20630 (11)	scaffold_3:19100849-19101114(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220343.1.S1_x_at	A	A1TS	POPTR_0003s20630	POPTR_0003s20630 (11)	scaffold_3:19100678-19101252(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220344.1.S1_at	A	A1MS	POPTR_0003s20610	POPTR_0003s20610 (11)	scaffold_3:19093411-19093623(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220344.1.S1_x_at	A	A1MS	POPTR_0003s20610	POPTR_0003s20610 (11)	scaffold_3:19093411-19093623(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220347.1.S1_x_at	A	A1TS	POPTR_0003s20530	POPTR_0003s20530 (11)	scaffold_3:19019182-19019736(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220348.1.S1_at	A	A1TS	POPTR_0003s20520	POPTR_0003s20520 (11)	scaffold_3:19008575-19008926(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT5G11290.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010560.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220355.1.S1_at	A	A1MS	POPTR_0006s13650	POPTR_0006s13650 (10)	scaffold_6:10867462-10867632(-) (10)	POPTR_0006s13640 (8)	Q9SMZ4	Alpha-aminoadipic semialdehyde synthase	AT4G33150.2	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme 	LOC_Os02g54254.1	"saccharopine dehydrogenase, putative, expressed"	Medtr8g133370.1	"NAD(P) transhydrogenase, alpha subunit; Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme conserved region "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.220355.1.S1_s_at	A	A2TS	POPTR_0006s13640	POPTR_0006s13650 (11)//POPTR_0006s13640 (11)	scaffold_6:10852332-10852450(-) (11)//scaffold_6:10867482-10867600(-) (11)	NA	Q9SMZ4	Alpha-aminoadipic semialdehyde synthase	AT4G33150.2	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme 	LOC_Os02g54254.1	"saccharopine dehydrogenase, putative, expressed"	Medtr8g133370.1	"NAD(P) transhydrogenase, alpha subunit; Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme conserved region "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.220355.1.S1_x_at	A	A2MS	POPTR_0006s13650	POPTR_0006s13650 (10)//POPTR_0006s13640 (9)	scaffold_6:10852312-10852478(-) (9)//scaffold_6:10867462-10867631(-) (10)	NA	Q9SMZ4	Alpha-aminoadipic semialdehyde synthase	AT4G33150.2	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme 	LOC_Os02g54254.1	"saccharopine dehydrogenase, putative, expressed"	Medtr8g133370.1	"NAD(P) transhydrogenase, alpha subunit; Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme conserved region "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.220364.1.S1_at	A	A1TS	POPTR_0003s02160	POPTR_0003s02160 (10)	scaffold_3:2276007-2276669(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220364.1.S1_x_at	A	A1TS	POPTR_0003s02160	POPTR_0003s02160 (10)	scaffold_3:2276007-2276669(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220365.1.S1_at	A	A1TS	POPTR_0027s00390	POPTR_0027s00390 (11)	scaffold_27:189829-190704(+) (11)	NA	NA	NA	AT2G26590.3	regulatory particle non-ATPase 13 	LOC_Os05g51640.2	"adhesion regulating molecule family, putative, expressed"	Medtr4g161200.1	Adhesion regulating molecule 	NA	NA	GO:0005737|cytoplasm||GO:0005634|nucleus
PtpAffx.220394.1.S1_at	A	A1TS	POPTR_0125s00200	POPTR_0125s00200 (11)	scaffold_125:26607-27097(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220397.1.S1_at	A	A1TS	POPTR_0015s09010	POPTR_0015s09010 (11)	scaffold_15:10338379-10339285(-) (11)	NA	NA	NA	AT3G48200.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os05g51620.2	expressed protein	Medtr3g114240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220415.1.S1_s_at	A	A1TS	POPTR_0004s12000	POPTR_0004s12000 (11)	scaffold_4:10904095-10904691(-) (11)	NA	Q9ZQ70	Probable WRKY transcription factor 3	AT2G03340.1	WRKY DNA-binding protein 3 	LOC_Os03g33012.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr7g011100.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.220420.1.S1_at	A	A1TS	POPTR_0003s02060	POPTR_0003s02060 (11)	scaffold_3:2056480-2057981(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220421.1.S1_x_at	A	A1TS	POPTR_0003s02080	POPTR_0003s02080 (11)	scaffold_3:2069588-2071109(-) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	AC233100_74.1	Leucine-rich repeat AC233100.6 329525-327081 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.220424.1.S1_s_at	A	A3TS	POPTR_0017s03290	POPTR_0017s03320 (11)//POPTR_0017s03290 (11)//POPTR_0017s00820 (10)	scaffold_17:615154-619306(+) (10)//scaffold_17:2393826-2394397(-) (11)//scaffold_17:2412265-2412832(-) (11)	NA	Q9LUN2	Probable metal-nicotianamine transporter YSL5	AT3G17650.1	YELLOW STRIPE like 5 	LOC_Os02g42220.1	"transposon protein, putative, unclassified, expressed"	Medtr6g089710.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220426.1.S1_s_at	A	A1TS	POPTR_0002s22540	POPTR_0002s22540 (11)	scaffold_2:19288943-19289393(+) (11)	NA	NA	NA	AT3G63090.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os01g18880.2	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	AC233676_39.1	"Protein of unknown function DUF860, plant AC233676.2 156194-157369 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220427.1.S1_at	A	A1TS	POPTR_0002s22570	POPTR_0002s22570 (11)	scaffold_2:19344692-19345992(+) (11)	NA	NA	NA	AT3G26670.3	Protein of unknown function (DUF803) 	LOC_Os02g31874.1	"DUF803 domain containing, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220468.1.S1_s_at	A	A1TS	POPTR_0039s00300	POPTR_0039s00300 (11)	scaffold_12:2550969-2551322(-) (10)//scaffold_39:18982-19334(-) (11)//scaffold_39:96539-96891(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G71400.1	receptor like protein 12 	LOC_Os12g10930.1	"NL0E, putative"	Medtr5g103960.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.220469.1.S1_x_at	A	A1TS	POPTR_0039s00330	POPTR_0039s00330 (10)	scaffold_39:133233-133772(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os12g10870.1	"verticillium wilt disease resistance protein, putative"	Medtr5g103960.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.220470.1.S1_x_at	A	A2MS	POPTR_0039s00360	POPTR_0046s00290 (11)//POPTR_0039s00360 (11)	scaffold_39:182537-182641(-) (11)//scaffold_46:96449-96553(-) (11)	POPTR_0039s00350 (6)//POPTR_0046s00235 (6)	Q9C9H7	Receptor-like protein 12	AT3G11080.1	receptor like protein 35 	LOC_Os12g11370.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr4g062050.1	hypothetical protein 	NA	GO:0005515|protein binding	NA
PtpAffx.220498.1.S1_at	A	A1TS	POPTR_0008s22070	POPTR_0008s22070 (11)	scaffold_8:16403815-16407759(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22051.1.S1_at	A	A1TS	POPTR_0015s01620	POPTR_0015s01620 (11)	scaffold_15:1023977-1024487(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr5g105060.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220516.1.S1_s_at	A	A6TS	POPTR_0001s29810	POPTR_0001s29870 (11)//POPTR_0001s29900 (11)//POPTR_0001s29880 (11)//POPTR_0001s29810 (11)//POPTR_0001s29840 (11)//POPTR_0001s29910 (10)	scaffold_1:28423666-28423969(-) (11)//scaffold_1:28434911-28435227(-) (11)//scaffold_1:28459231-28459534(-) (11)//scaffold_1:28469311-28469614(-) (11)//scaffold_1:28489252-28489555(-) (11)//scaffold_1:28498808-28499111(+) (10)	NA	Q9C7Z9	Serine carboxypeptidase-like 18	AT1G73300.1	serine carboxypeptidase-like 2 	LOC_Os10g01110.1	"OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g022160.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.220521.1.S1_s_at	A	A1TS	POPTR_0005s14860	POPTR_0005s14860 (11)	scaffold_5:11772553-11773464(+) (11)	NA	NA	NA	AT2G01275.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g03100.2	"protein binding protein, putative, expressed"	Medtr1g137400.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220523.1.S1_at	A	A1TS	POPTR_0005s14890	POPTR_0005s14890 (10)	scaffold_5:11779474-11779991(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g094120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220534.1.S1_at	A	A1TA	POPTR_0012s12140	POPTR_0012s12140 (11)	scaffold_12:12419512-12419568(-) (11)//scaffold_12:14875647-14875703(+) (11)//scaffold_1940:1010-1066(+) (11)//scaffold_2835:1301-1357(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220537.1.S1_at	A	A1TS	POPTR_0019s05300	POPTR_0019s05300 (11)	scaffold_19:5595426-5595862(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os09g14010.1	"disease resistance protein RPS2, putative"	AC225526_21.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; NB-ARC AC225526.7 82606-71468 E EGN_Mt090430 200"	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220538.1.S1_at	A	A1TS	POPTR_0019s05290	POPTR_0019s05290 (11)	scaffold_19:5559322-5559785(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43050.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220539.1.S1_at	A	A1TS	POPTR_0019s05260	POPTR_0019s05260 (11)	scaffold_19:5536744-5537257(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220545.1.S1_at	A	A1MS	POPTR_0016s10900	POPTR_0016s10900 (11)	scaffold_16:9264795-9265416(+) (11)	NA	NA	NA	AT2G36720.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g01170.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220554.1.S1_at	A	A1TS	POPTR_0006s08915	POPTR_0006s08915 (11)	scaffold_6:6585636-6586810(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	NA
PtpAffx.220599.1.S1_at	A	A1TS	POPTR_0018s04330	POPTR_0018s04330 (11)	scaffold_18:3654373-3654609(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220599.1.S1_x_at	A	A1TS	POPTR_0018s04330	POPTR_0018s04330 (11)	scaffold_18:3654373-3654669(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220600.1.S1_at	A	A1TS	POPTR_0018s04330	POPTR_0018s04330 (11)	scaffold_18:3654812-3654942(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220600.1.S1_x_at	A	A1TS	POPTR_0018s04330	POPTR_0018s04330 (11)	scaffold_18:3654797-3654974(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.22061.1.A1_at	A	A1TS	POPTR_0001s00260	POPTR_0001s00260 (11)	scaffold_1:127972-129592(-) (11)	NA	B0UV30	Transaldolase	AT1G12230.1	Aldolase superfamily protein 	LOC_Os08g05830.1	"transaldolase, putative, expressed"	Medtr8g106240.1	Transaldolase 	GO:0005975|carbohydrate metabolic process	NA	NA
PtpAffx.220614.1.S1_s_at	A	A1TS	POPTR_0013s06590	POPTR_0013s06590 (11)	scaffold_13:5228398-5228986(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220615.1.S1_s_at	A	A1TS	POPTR_0015s07970	POPTR_0015s07970 (11)	scaffold_15:9246149-9246700(-) (11)	NA	NA	NA	AT1G74830.1	"Protein of unknown function, DUF593 "	LOC_Os10g27480.1	expressed protein	AC233677_15.1	Protein of unknown function DUF593 AC233677.2 93257-91501 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220630.1.S1_x_at	A	A1TS	POPTR_0057s00200	POPTR_0057s00200 (11)	scaffold_57:6301-6560(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220673.1.S1_at	A	A1TS	POPTR_0017s01130	POPTR_0017s01130 (11)	scaffold_17:804452-804653(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220703.1.S1_at	A	A1MS	POPTR_0034s00250	POPTR_0034s00250 (9)	scaffold_34:136575-137290(+) (10)	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g123950.1	Retrotransposon gag protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220707.1.S1_at	A	A1TS	POPTR_0001s01670	POPTR_0001s01670 (9)	scaffold_1:1237393-1242523(-) (9)//scaffold_1631:2226-2315(+) (9)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os07g40810.1	"NBS-LRR type disease resistance protein, putative"	Medtr5g028060.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220713.1.S1_s_at	A	A1TS	POPTR_0006s14670	POPTR_0006s14670 (11)	scaffold_1:16740352-16740692(-) (11)//scaffold_6:12035097-12035433(+) (11)//scaffold_6:24034172-24034586(-) (11)	POPTR_0006s25660 (7)//POPTR_0001s19240 (7)	Q9LU14	GDSL esterase/lipase APG	AT3G16370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os06g05550.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g121910.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.220718.1.S1_x_at	A	A1TS	POPTR_0019s12810	POPTR_0019s12810 (11)	scaffold_19:13753215-13753354(-) (11)	NA	NA	NA	AT1G53130.1	Stigma-specific Stig1 family protein 	NA	NA	Medtr2g100490.1	Stigma-specific protein Stig1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220724.1.S1_at	A	A1TS	POPTR_0006s18310	POPTR_0006s18310 (11)	scaffold_6:16669183-16669698(+) (11)	POPTR_1043s00200 (8)	Q6NLE0	F-box protein At5g41720	AT1G64290.1	F-box protein-related 	LOC_Os08g43530.1	OsFBX306 - F-box domain containing protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220724.1.S1_x_at	A	A2TS	POPTR_0006s18310	POPTR_0006s18310 (11)//POPTR_1043s00200 (9)	scaffold_1043:3740-4327(-) (9)//scaffold_6:16669110-16669697(+) (11)	NA	Q6NLE0	F-box protein At5g41720	AT1G64290.1	F-box protein-related 	LOC_Os08g43530.1	OsFBX306 - F-box domain containing protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220732.1.S1_at	A	A2TS	POPTR_0031s00350	POPTR_0031s00350 (11)//POPTR_0019s00410 (9)	scaffold_19:202579-203074(-) (9)//scaffold_31:174963-175524(+) (11)	NA	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	AC225526_3.1	NB-ARC; AAA ATPase AC225526.7 19758-13755 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220738.1.S1_x_at	A	A1TS	POPTR_0005s03490	POPTR_0005s03490 (11)	scaffold_5:2347501-2347988(-) (11)	POPTR_0005s03200 (6)//POPTR_0005s03360 (6)	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220739.1.S1_x_at	A	A1TS	POPTR_0005s03480	POPTR_0005s03480 (10)	scaffold_5:2339069-2339839(-) (11)	NA	Q9BVG8	Kinesin-like protein KIFC3	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.220741.1.S1_at	A	A1TS	POPTR_0005s03400	POPTR_0005s03400 (11)	scaffold_5:2227428-2228083(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.220741.1.S1_x_at	A	A1TS	POPTR_0005s03400	POPTR_0005s03400 (11)	scaffold_5:2227428-2228083(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.220742.1.S1_s_at	A	A1TS	POPTR_0005s03010	POPTR_0005s03010 (11)	scaffold_5:1972356-1972392(-) (11)//scaffold_5:2076386-2076422(-) (11)//scaffold_5:2136032-2136068(-) (11)//scaffold_5:2339432-2339468(-) (11)	NA	O81635	Kinesin-4	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.220743.1.S1_at	A	A2TS	POPTR_0001s42520	POPTR_0001s42520 (11)//POPTR_0001s43690 (9)	scaffold_1:42503157-42503548(+) (11)//scaffold_1:43975742-43976133(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220743.1.S1_x_at	A	A1TS	POPTR_0001s42520	POPTR_0001s42520 (10)	scaffold_1:42503081-42503548(+) (10)//scaffold_1:43975647-43976133(-) (10)	POPTR_0001s43690 (7)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220765.1.S1_s_at	A	A1TS	POPTR_0018s10670	POPTR_0018s10670 (11)	scaffold_18:11554841-11555311(-) (11)	NA	Q8L7Z0	Probable cyclic nucleotide-gated ion channel 17	AT4G30360.1	cyclic nucleotide-gated channel 17 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.220766.1.S1_at	A	A1MS	POPTR_0004s05300	POPTR_0004s05300 (11)	scaffold_4:4055483-4055643(-) (11)	NA	Q6NMR9	GDSL esterase/lipase At5g45920	AT5G45920.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os01g11570.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g018940.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.220769.1.S1_at	A	A1TS	POPTR_0015s06260	POPTR_0015s06260 (9)	scaffold_15:6697175-6697509(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220773.1.S1_s_at	A	A1TS	POPTR_0008s17210	POPTR_0008s17210 (11)	scaffold_8:11559842-11560112(+) (11)	NA	NA	NA	AT2G33320.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g57000.1	"C2 domain containing protein, putative, expressed"	Medtr1g065790.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220774.1.S1_at	A	A2TS	POPTR_0010s09930	POPTR_0010s09930 (11)//POPTR_0569s00200 (11)	scaffold_10:10524976-10525074(-) (11)//scaffold_2351:208-306(+) (11)//scaffold_569:566-664(-) (11)	NA	Q43077	Primary amine oxidase	AT1G31710.1	Copper amine oxidase family protein 	LOC_Os06g23140.1	"copper methylamine oxidase precursor, putative"	Medtr1g132560.1	Copper amine oxidase; ; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.220774.1.S1_s_at	A	A2TS	POPTR_0010s09930	POPTR_0010s09930 (11)//POPTR_0569s00200 (11)	scaffold_10:10525067-10525224(-) (11)//scaffold_2351:58-215(+) (11)//scaffold_569:657-814(-) (11)	NA	Q43077	Primary amine oxidase	AT1G31710.1	Copper amine oxidase family protein 	LOC_Os06g23140.1	"copper methylamine oxidase precursor, putative"	Medtr1g132560.1	Copper amine oxidase; ; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.220776.1.S1_at	A	A1TS	POPTR_0231s00220	POPTR_0231s00220 (11)	scaffold_231:10683-11448(+) (11)	NA	Q23892	Lysosomal beta glucosidase	AT5G04885.1	Glycosyl hydrolase family protein 	LOC_Os03g53800.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.220777.1.S1_s_at	A	A1TS	POPTR_0007s06280	POPTR_0007s06280 (11)	scaffold_7:4436281-4436569(-) (11)	POPTR_0007s06320 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220778.1.S1_x_at	A	A1TS	POPTR_0007s06290	POPTR_0007s06290 (11)	scaffold_7:4444058-4446120(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220779.1.S1_s_at	A	A2TS	POPTR_0007s06250	POPTR_0007s06250 (11)//POPTR_0007s06290 (11)	scaffold_7:4403370-4403445(-) (11)//scaffold_7:4444082-4444157(-) (11)//scaffold_7:4480080-4480155(-) (11)	NA	O00410	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220781.1.S1_at	A	A1TS	POPTR_0007s06350	POPTR_0007s06350 (11)	scaffold_7:4546997-4547142(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g43430.1	"cytochrome P450, putative, expressed"	Medtr4g140680.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220782.1.S1_s_at	A	A1TS	POPTR_0017s06240	POPTR_0017s06240 (11)	scaffold_17:4816847-4817016(+) (11)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os10g01750.1	"retrotransposon protein, putative, unclassified"	Medtr3g076270.1	NB-ARC 	GO:0006915|apoptosis	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.220787.1.S1_s_at	A	A2TS	POPTR_0001s34580	POPTR_0001s34580 (11)//POPTR_0095s00220 (11)	scaffold_1:32787753-32788302(+) (11)//scaffold_95:49575-50106(+) (11)	NA	Q6MAS9	Glycogen synthase	AT4G18240.1	starch synthase 4 	LOC_Os05g45720.1	"starch synthase, putative, expressed"	Medtr3g123800.1	"Glycosyl transferase, group 1; N-6 Adenine-specific DNA methylase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220788.1.S1_s_at	A	A2TS	POPTR_0008s18460	POPTR_0008s18460 (11)//POPTR_0008s18550 (11)	scaffold_8:12432237-12432281(+) (11)//scaffold_8:12521562-12521606(+) (11)	NA	NA	NA	AT1G58190.2	receptor like protein 9 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC235756_10.1	Leucine-rich repeat AC235756.1 88514-87135 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.220788.1.S1_x_at	A	A1MS	POPTR_0008s18460	POPTR_0008s18460 (11)	scaffold_8:12432240-12432389(+) (11)	NA	NA	NA	AT1G58190.2	receptor like protein 9 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC235756_10.1	Leucine-rich repeat AC235756.1 88514-87135 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.220790.1.S1_s_at	A	A1TS	POPTR_0015s05870	POPTR_0015s05870 (11)	scaffold_15:6197969-6198238(-) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os01g41750.1	expressed protein	Medtr5g093230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.220791.1.S1_at	A	A1TS	POPTR_0010s01260	POPTR_0010s01260 (11)	scaffold_10:1197997-1198126(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220793.1.S1_x_at	A	A1TS	POPTR_0006s15010	POPTR_0006s15010 (11)	scaffold_6:12484880-12485117(-) (11)	NA	NA	NA	AT3G47680.1	DNA binding 	LOC_Os10g27370.1	"transposon protein, putative, Pong sub-class, expressed"	Medtr7g104980.1	Histidine triad (HIT) protein; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220794.1.S1_at	A	A1TS	POPTR_0004s17675	POPTR_0004s17675 (9)	scaffold_4:17778570-17778827(+) (9)	NA	NA	NA	AT4G34880.1	Amidase family protein 	LOC_Os10g06710.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220798.1.S1_x_at	A	A1TS	POPTR_0016s01265	POPTR_0016s01265 (10)	scaffold_16:534546-534883(-) (10)	NA	NA	NA	AT5G21990.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g06710.1	"tetratricopeptide repeat, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220799.1.S1_at	A	A1TS	POPTR_0228s00210	POPTR_0228s00210 (11)	scaffold_228:21075-21458(+) (11)	NA	Q9M1Q9	ABC transporter B family member 21	AT3G62150.1	P-glycoprotein 21 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.220799.1.S1_s_at	A	A2TS	POPTR_0228s00210	POPTR_0228s00210 (11)//POPTR_0014s10870 (10)	scaffold_14:8119538-8120219(-) (11)//scaffold_228:20379-21060(+) (11)	NA	Q9M1Q9	ABC transporter B family member 21	AT3G62150.1	P-glycoprotein 21 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.220800.1.S1_x_at	A	A1TS	POPTR_0011s01350	POPTR_0011s01350 (11)	scaffold_11:918988-919410(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr7g105900.1	TIR; NB-ARC; AAA ATPase 	NA	GO:0005515|protein binding	NA
PtpAffx.220812.1.S1_s_at	A	A2TS	POPTR_0017s05520	POPTR_0017s05520 (11)//POPTR_0017s05540 (11)	scaffold_17:4366053-4366440(+) (9)//scaffold_17:4370134-4370671(-) (11)//scaffold_17:4378166-4378703(-) (11)	NA	P09524	Transactivator/viroplasmin protein	NA	NA	NA	NA	Medtr2g011090.1	Ribosomal protein L9 N-terminal-like 	NA	NA	GO:0016234|inclusion body
PtpAffx.220813.1.S1_s_at	A	A1MS	POPTR_0011s16720	POPTR_0011s16720 (11)	scaffold_11:18496846-18497322(-) (11)	NA	Q99685	Monoglyceride lipase	AT5G14980.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g21560.1	"esterase/lipase/thioesterase family protein, putative, expressed"	Medtr1g120940.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220814.1.S1_at	A	A1TS	POPTR_0010s24350	POPTR_0010s24350 (11)	scaffold_10:20605776-20606424(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.220815.1.S1_at	A	A1TS	POPTR_0004s02150	POPTR_0004s02150 (11)	scaffold_4:1334327-1334722(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220819.1.S1_x_at	A	A1TS	POPTR_0011s06350	POPTR_0011s06350 (11)	scaffold_11:6568103-6569472(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr5g091330.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.220821.1.S1_s_at	A	A8TS	POPTR_0001s03190	POPTR_0316s00220 (11)//POPTR_0001s07540 (11)//POPTR_0001s03210 (11)//POPTR_0001s03190 (11)//POPTR_0001s03230 (11)//POPTR_1809s00200 (11)//POPTR_0001s07550 (10)//POPTR_0001s07620 (9)	scaffold_1:2576829-2577225(-) (11)//scaffold_1:2633620-2634016(-) (11)//scaffold_1:2657119-2657515(-) (11)//scaffold_1:5660266-5660662(-) (11)//scaffold_1:5674085-5674398(-) (10)//scaffold_1:5761606-5761919(-) (9)//scaffold_1809:3399-3795(+) (11)//scaffold_2450:2445-2757(+) (10)//scaffold_316:8288-8684(-) (11)	POPTR_2450s00200 (8)	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os02g02120.1	OsWAK11 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.220824.1.S1_s_at	A	A1TS	POPTR_0006s20750	POPTR_0006s20750 (11)	scaffold_6:19732797-19732930(-) (11)	NA	NA	NA	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g17490.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220828.1.S1_s_at	A	A1TS	POPTR_0007s10600	POPTR_0007s10600 (11)	scaffold_7:10632761-10633118(+) (11)	NA	A3KPE8	Small RNA degrading nuclease 1	AT5G67240.2	small RNA degrading nuclease 3 	LOC_Os04g55700.1	"exonuclease, putative, expressed"	Medtr1g027960.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220829.1.S1_at	A	A1MS	POPTR_1133s00200	POPTR_1133s00200 (11)	scaffold_1133:5078-5660(-) (11)	NA	O65012	Cytochrome P450 78A4	AT1G74110.1	"cytochrome P450, family 78, subfamily A, polypeptide 10 "	LOC_Os07g41240.1	"cytochrome P450, putative, expressed"	Medtr5g047920.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22083.1.S1_at	A	A1TA	POPTR_0016s04960	POPTR_0016s04960 (11)	scaffold_16:2995262-2995545(-) (11)	POPTR_0006s05780 (6)	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT3G57880.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr7g111440.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220830.1.S1_x_at	A	A1TS	POPTR_0017s09330	POPTR_0017s09330 (10)	scaffold_17:7957476-7957867(+) (10)	POPTR_0018s03190 (7)	O81776	Glutamate receptor 2.4	AT4G31710.1	glutamate receptor 2.4 	LOC_Os09g25980.1	"glutamate receptor 2.6 precursor, putative"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220832.1.S1_at	A	A1MA	POPTR_0001s19520	POPTR_0001s19520 (9)	NA	NA	NA	NA	AT1G73020.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF590 (InterPro:IPR007632). 	LOC_Os01g51040.1	"transmembrane protein 16K, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220836.1.S1_at	A	A2TS	POPTR_0017s09410	POPTR_0017s09410 (11)//POPTR_0018s03240 (11)	scaffold_17:7924754-7925060(+) (11)//scaffold_17:8015001-8015307(+) (11)//scaffold_18:2862158-2862464(+) (11)	POPTR_0017s09310 (8)	O04660	Glutamate receptor 2.1	AT5G27100.1	glutamate receptor 2.1 	NA	NA	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220836.1.S1_x_at	A	A2TS	POPTR_0017s09410	POPTR_0017s09410 (11)//POPTR_0018s03240 (11)	scaffold_17:7924754-7925060(+) (11)//scaffold_17:8015001-8015307(+) (11)//scaffold_18:2862158-2862464(+) (11)	POPTR_0017s09310 (8)	O04660	Glutamate receptor 2.1	AT5G27100.1	glutamate receptor 2.1 	NA	NA	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220838.1.S1_s_at	A	A1TS	POPTR_0017s03560	POPTR_0017s03560 (11)	scaffold_17:2584342-2585433(-) (11)	NA	Q6ZPJ0	Testis-expressed sequence 2 protein	AT1G17820.1	Putative integral membrane protein conserved region (DUF2404) 	LOC_Os02g58110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220843.1.S1_x_at	A	A1TS	POPTR_0046s00220	POPTR_0046s00220 (11)	scaffold_46:28926-29333(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G11080.1	receptor like protein 35 	LOC_Os12g11510.1	"hcr2-0B, putative"	Medtr5g102380.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.220844.1.S1_at	A	A1TS	POPTR_0046s00230	POPTR_0046s00230 (11)	scaffold_46:40047-41827(+) (11)	NA	Q505J9	ATPase family AAA domain-containing protein 1	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.220845.1.S1_at	A	A1TS	POPTR_0046s00235	POPTR_0046s00235 (11)	scaffold_46:42572-42772(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g084300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220846.1.S1_s_at	A	A1TS	POPTR_0012s00800	POPTR_0012s00800 (11)	scaffold_12:468077-468330(+) (11)//scaffold_46:57619-57872(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os12g12010.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g093720.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.220847.1.S1_at	A	A1TS	POPTR_0046s00270	POPTR_0046s00270 (11)	scaffold_46:60191-60860(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220853.1.S1_at	A	A1TS	POPTR_0013s09730	POPTR_0013s09730 (11)	scaffold_13:9695731-9696342(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220861.1.S1_x_at	A	A1TS	POPTR_0020s00380	POPTR_0020s00380 (9)	scaffold_10:3585518-3585616(-) (9)//scaffold_19:13898820-13898918(-) (9)//scaffold_2:20541322-20541420(+) (9)//scaffold_20:525740-525838(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220874.1.S1_s_at	A	A1TS	POPTR_0001s06850	POPTR_0001s06850 (10)	scaffold_1:5236702-5237345(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220876.1.S1_at	A	A1TS	POPTR_0001s04290	POPTR_0001s04290 (11)	scaffold_1:3394661-3395259(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.220882.1.S1_at	A	A2MS	POPTR_0013s09320	POPTR_0013s09320 (11)//POPTR_1298s00200 (11)	scaffold_1298:7246-7366(-) (11)//scaffold_13:8985721-8985841(-) (11)	POPTR_0013s09330 (8)	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220883.1.S1_at	A	A2TS	POPTR_1392s00200	POPTR_1392s00200 (11)//POPTR_0016s02210 (10)	scaffold_1392:715-871(+) (11)//scaffold_16:1067091-1067136(+) (10)	NA	Q80UY1	UPF0586 protein C9orf41 homolog	AT2G32170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g43560.1	"AGAP007115-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220884.1.S1_at	A	A3TS	POPTR_0011s06880	POPTR_0011s06880 (11)//POPTR_0005s22230 (10)//POPTR_0005s22240 (9)	scaffold_11:7584132-7584846(+) (11)//scaffold_5:21211742-21219190(-) (11)	NA	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.220885.1.S1_s_at	A	A1TS	POPTR_0013s12950	POPTR_0013s12950 (11)	scaffold_13:13560138-13561785(+) (11)	NA	Q6AXX4	Something about silencing protein 10	AT2G43650.1	Sas10/U3 ribonucleoprotein (Utp) family protein 	LOC_Os01g01510.1	"sas10/Utp3 family protein, expressed"	Medtr4g128610.1	Sas10/Utp3 	GO:0016458|gene silencing	NA	GO:0005634|nucleus
PtpAffx.220899.1.S1_at	A	A1TS	POPTR_0019s13520	POPTR_0019s13520 (10)	scaffold_19:14425322-14425740(-) (10)	NA	Q9LN59	Putative wall-associated receptor kinase-like 11	AT1G19390.1	Wall-associated kinase family protein 	LOC_Os12g42060.2	"OsWAK128b - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220902.1.S1_s_at	A	A2TS	POPTR_0012s10920	POPTR_0012s10950 (11)//POPTR_0012s10920 (11)	scaffold_12:11587091-11587222(-) (11)//scaffold_12:11600775-11600906(+) (11)	POPTR_0016s12980 (7)	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os03g18454.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed"	Medtr3g034400.1	Gamma interferon inducible lysosomal thiol reductase GILT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220903.1.S1_s_at	A	A1TS	POPTR_0012s10960	POPTR_0012s10960 (11)	scaffold_12:11604506-11605120(+) (11)	NA	NA	NA	AT4G23490.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr5g010170.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220905.1.S1_s_at	A	A1TS	POPTR_0097s00240	POPTR_0097s00240 (11)	scaffold_6:1861836-1862156(+) (11)//scaffold_97:17002-17322(-) (11)	POPTR_0006s02940 (8)	P85200	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.220906.1.S1_at	A	A1TS	POPTR_0097s00260	POPTR_0097s00260 (11)	scaffold_97:24870-25138(+) (11)	NA	NA	NA	AT3G10480.2	NAC domain containing protein 50 	LOC_Os08g44820.1	"no apical meristem protein, putative, expressed"	Medtr1g065520.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.220907.1.S1_at	A	A1TS	POPTR_0097s00270	POPTR_0097s00270 (11)	scaffold_97:33353-33519(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220907.1.S1_x_at	A	A1TS	POPTR_0097s00270	POPTR_0097s00270 (11)	scaffold_97:33353-33525(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220908.1.S1_at	A	A1TS	POPTR_0097s00280	POPTR_0097s00280 (11)	scaffold_97:38862-39380(+) (11)	NA	NA	NA	AT2G24430.2	NAC domain containing protein 38 	NA	NA	Medtr1g065520.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.220910.1.S1_s_at	A	A2TS	POPTR_0006s02910	POPTR_0302s00220 (11)//POPTR_0006s02910 (11)	scaffold_302:7891-7965(-) (11)//scaffold_6:1847711-1847785(-) (11)//scaffold_97:13479-13547(+) (10)	NA	Q9FIW5	Putative NAC domain-containing protein 94	AT3G10480.2	NAC domain containing protein 50 	LOC_Os09g32040.1	"no apical meristem protein, putative, expressed"	Medtr1g065520.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.220911.1.S1_at	A	A1TS	POPTR_0004s03510	POPTR_0004s03510 (11)	scaffold_4:2428377-2429025(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g35470.1	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220914.1.S1_at	A	A1MS	POPTR_0013s12680	POPTR_0013s12680 (9)	scaffold_13:13386665-13386740(+) (9)	NA	Q9P7W0	OPA3-like protein	AT1G28510.1	Optic atrophy 3 protein (OPA3) 	LOC_Os02g20844.1	expressed protein	Medtr2g018330.1	Optic atrophy 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220917.1.S1_x_at	A	A1TS	POPTR_0012s12310	POPTR_0012s12310 (11)	scaffold_12:12525260-12525734(+) (11)//scaffold_12:14720714-14733177(-) (9)	POPTR_0012s12350 (8)//POPTR_0012s15000 (8)//POPTR_0012s15030 (7)//POPTR_0012s15090 (6)	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220918.1.S1_at	A	A1TS	POPTR_0012s14970	POPTR_0012s14970 (10)	scaffold_12:12541380-12542236(+) (9)//scaffold_12:14654874-14655730(-) (10)	POPTR_0012s12330 (8)	O82178	Pentatricopeptide repeat-containing protein At2g35130	AT2G35130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g07360.1	"pentatricopeptide containing protein, putative, expressed"	Medtr2g041460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220919.1.S1_at	A	A1TS	POPTR_0012s15030	POPTR_0012s15030 (11)	scaffold_12:14699788-14700284(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220919.1.S1_x_at	A	A1TS	POPTR_0012s15030	POPTR_0012s15030 (11)	scaffold_12:14699788-14700284(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220921.1.S1_s_at	A	A1TS	POPTR_0005s01800	POPTR_0005s01800 (10)	scaffold_5:1211477-1211776(+) (11)	POPTR_0107s00270 (6)//POPTR_0107s00240 (6)	O64477	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	AT2G19130.1	S-locus lectin protein kinase family protein 	LOC_Os01g66610.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g103080.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.220923.1.S1_at	A	A1TS	POPTR_0012s01470	POPTR_0012s01470 (11)	scaffold_12:1065252-1065514(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220924.1.S1_at	A	A1TS	POPTR_0012s01450	POPTR_0012s01450 (11)	scaffold_12:1062810-1064082(-) (11)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220924.1.S1_x_at	A	A1TS	POPTR_0012s01450	POPTR_0012s01450 (11)	scaffold_12:1062810-1064082(-) (11)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220925.1.S1_at	A	A1TS	POPTR_0471s00200	POPTR_0471s00200 (11)	scaffold_471:2953-3143(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220926.1.S1_at	A	A1TS	POPTR_0012s01440	POPTR_0012s01440 (11)	scaffold_12:1041193-1041582(+) (11)	NA	NA	NA	AT5G24130.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g15740.1	expressed protein	Medtr3g124560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220927.1.S1_x_at	A	A1TS	POPTR_0001s43550	POPTR_0001s43550 (9)	scaffold_1:43732648-43732956(+) (9)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr7g105090.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220929.1.S1_at	A	A1TS	POPTR_0001s43550	POPTR_0001s43550 (11)	scaffold_1:43727024-43730940(+) (11)	POPTR_0001s43545 (8)	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr7g105090.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220930.1.S1_at	A	A1MS	POPTR_0005s05300	POPTR_0005s05300 (9)	scaffold_5:3506722-3506865(+) (9)	NA	Q08647	Multisubstrate pseudouridine synthase 7	AT3G04820.1	Pseudouridine synthase family protein 	LOC_Os01g56620.1	"pseudouridylate synthase, putative, expressed"	Medtr7g140700.1	"RNA binding ^, related "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.220930.1.S1_s_at	A	A1TS	POPTR_0005s05300	POPTR_0005s05300 (11)	scaffold_5:3506142-3506806(+) (11)	NA	Q08647	Multisubstrate pseudouridine synthase 7	AT3G04820.1	Pseudouridine synthase family protein 	LOC_Os01g56620.1	"pseudouridylate synthase, putative, expressed"	Medtr7g140700.1	"RNA binding ^, related "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.220931.1.S1_x_at	A	A1TS	POPTR_0011s06570	POPTR_0011s06570 (10)	scaffold_11:7068418-7069582(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G29720.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr4g136230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.220935.1.S1_at	A	A1TS	POPTR_0013s12000	POPTR_0013s12000 (11)	scaffold_13:12680542-12680980(-) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr2g103160.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.220936.1.S1_at	A	A1TS	POPTR_0002s15190	POPTR_0002s15190 (11)	scaffold_2:11348922-11349882(+) (11)	NA	Q7ZWU7	Extended synaptotagmin-2-B	AT3G61050.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os07g22640.1	"lipid binding protein, putative, expressed"	Medtr7g083350.1	C2; Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220937.1.S1_s_at	A	A1TS	POPTR_0003s01245	POPTR_0003s01245 (11)	scaffold_3:1049579-1049720(+) (11)//scaffold_3:1054423-1054564(+) (11)//scaffold_3:1065158-1074895(+) (11)//scaffold_3:1094098-1094239(+) (11)	NA	Q9SZT8	"Pentatricopeptide repeat-containing protein At4g37380, chloroplastic"	AT4G37380.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g13110.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220939.1.S1_s_at	A	A1TS	POPTR_0007s07590	POPTR_0007s07590 (10)	scaffold_482:11960-12216(+) (11)//scaffold_7:5958568-5958824(+) (11)	POPTR_0482s00200 (6)	P31414	Pyrophosphate-energized vacuolar membrane proton pump 1	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220940.1.S1_s_at	A	A2TS	POPTR_0017s06710	POPTR_0017s06710 (11)//POPTR_0017s06800 (11)	scaffold_17:5129049-5129360(-) (11)//scaffold_17:5188706-5189017(+) (11)	POPTR_0017s06810 (7)	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os12g21850.1	"OsMADS73 - MADS-box family gene with M-alpha type-box, expressed"	AC233655_14.1	"Transcription factor, MADS-box; AAA-protein subdomain AC233655.2 100109-101295 H EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.220942.1.S1_at	A	A1TS	POPTR_0172s00220	POPTR_0172s00220 (11)	scaffold_172:25859-26311(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os11g33394.2	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010460.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220943.1.S1_at	A	A1TS	POPTR_0172s00210	POPTR_0172s00210 (11)	scaffold_172:10688-20594(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220944.1.S1_at	A	A1TS	POPTR_0006s29550	POPTR_0006s29550 (11)	scaffold_6:26886764-26887068(+) (11)	NA	Q9ZQ34	Uncharacterized protein At2g24330	AT4G31080.1	Protein of unknown function (DUF2296) 	LOC_Os02g41990.2	expressed protein	Medtr3g133570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220944.1.S1_s_at	A	A1TS	POPTR_0006s29550	POPTR_0006s29550 (11)	scaffold_6:26884550-26886762(+) (11)	NA	Q9ZQ34	Uncharacterized protein At2g24330	AT4G31080.1	Protein of unknown function (DUF2296) 	LOC_Os02g41990.2	expressed protein	Medtr3g133570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220945.1.S1_s_at	A	A6TS	POPTR_0005s04290	POPTR_0005s04430 (11)//POPTR_0005s04380 (11)//POPTR_0369s00230 (11)//POPTR_0005s04290 (11)//POPTR_0005s04360 (11)//POPTR_0005s04320 (11)	scaffold_369:17953-18345(+) (11)//scaffold_5:2876562-2876953(+) (11)//scaffold_5:2892258-2892650(+) (11)//scaffold_5:2929578-2929970(+) (11)//scaffold_5:2951963-2952355(+) (11)//scaffold_5:2972437-2972829(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220946.1.S1_at	A	A1MS	POPTR_0002s13230	POPTR_0002s13230 (9)	scaffold_2:9857646-9857802(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220947.1.S1_x_at	A	A4TS	POPTR_0046s00220	POPTR_0046s00220 (11)//POPTR_0046s00360 (11)//POPTR_0012s00500 (9)//POPTR_0012s00560 (9)	scaffold_11:8942968-8943065(-) (11)//scaffold_1137:6331-6401(-) (9)//scaffold_12:179604-179674(-) (9)//scaffold_12:191476-191546(-) (9)//scaffold_12:233323-233393(-) (9)//scaffold_12:271733-271803(-) (9)//scaffold_12:284694-284764(-) (9)//scaffold_46:29021-29118(-) (11)//scaffold_46:154285-154382(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G11080.1	receptor like protein 35 	LOC_Os12g11510.1	"hcr2-0B, putative"	Medtr5g102380.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.220948.1.S1_at	A	A1TS	POPTR_0046s00370	POPTR_0046s00370 (11)	scaffold_11:8918276-8918726(+) (9)//scaffold_12:509514-509953(-) (9)//scaffold_46:157477-157951(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220950.1.S1_at	A	A1TS	POPTR_0012s03240	POPTR_0012s03240 (11)	scaffold_12:2562251-2562468(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220950.1.S1_x_at	A	A1TS	POPTR_0012s03240	POPTR_0012s03240 (11)	scaffold_12:2562251-2562468(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220951.1.S1_at	A	A1TS	POPTR_0012s03250	POPTR_0012s03250 (11)	scaffold_12:2565718-2566218(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220955.1.S1_at	A	A1TS	POPTR_0012s03280	POPTR_0012s03280 (11)	scaffold_12:2582152-2582526(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G28890.2	receptor like protein 43 	LOC_Os12g10930.1	"NL0E, putative"	Medtr5g093760.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.220955.1.S1_x_at	A	A1TS	POPTR_0012s03280	POPTR_0012s03280 (10)	scaffold_12:2582133-2582685(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G28890.2	receptor like protein 43 	LOC_Os12g10930.1	"NL0E, putative"	Medtr5g093760.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.220956.1.S1_at	A	A3TS	POPTR_0007s04510	POPTR_0007s04510 (11)//POPTR_0007s04520 (10)//POPTR_0007s04500 (9)	scaffold_7:2789779-2790610(+) (9)//scaffold_7:2800761-2801593(+) (11)//scaffold_7:2810383-2811194(+) (10)	NA	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr8g109220.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.22096.1.S1_at	A	A1TS	POPTR_0012s13080	POPTR_0012s13080 (10)	scaffold_12:13378394-13378691(-) (10)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.22096.2.A1_a_at	A	A2TS	POPTR_0012s13080	POPTR_0015s12980 (11)//POPTR_0012s13080 (11)	scaffold_12:13378569-13378771(-) (11)//scaffold_15:13116807-13117009(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.22096.2.A1_at	A	A1TS	POPTR_0015s12980	POPTR_0015s12980 (10)	scaffold_15:13116613-13117025(-) (10)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.220960.1.S1_s_at	A	A1TS	POPTR_0010s13050	POPTR_0010s13050 (11)	scaffold_10:12947258-12947956(+) (11)	NA	Q9ZDC7	Putative glutamine amidotransferase-like protein RP404	AT5G38200.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os01g04620.3	"transposon protein, putative, unclassified, expressed"	Medtr7g093720.1	Peptidase C26 	GO:0006541|glutamine metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.220961.1.S1_at	A	A1TS	POPTR_0009s00360	POPTR_0009s00360 (11)	scaffold_9:172439-172656(-) (9)//scaffold_9:193352-193568(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220962.1.S1_at	A	A1TS	POPTR_0183s00250	POPTR_0183s00250 (11)	scaffold_183:26279-26559(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220963.1.S1_at	A	A1TS	POPTR_0183s00230	POPTR_0183s00230 (11)	scaffold_183:22611-23474(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220965.1.S1_x_at	A	A1TS	POPTR_0183s00210	POPTR_0183s00210 (11)	scaffold_183:18608-18925(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.220969.1.S1_x_at	A	A1TS	POPTR_0002s12280	POPTR_0002s12280 (11)	scaffold_2:9101448-9110923(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g009400.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.220970.1.S1_x_at	A	A2TS	POPTR_0002s12270	POPTR_0002s12270 (10)//POPTR_0002s12280 (9)	scaffold_2:9101306-9101636(+) (11)//scaffold_2:9110612-9110942(+) (9)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g009350.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.220974.1.S1_at	A	A1TS	POPTR_0009s08955	POPTR_0009s08955 (10)	scaffold_9:8053450-8054379(+) (10)	NA	Q8RUW5	Serine carboxypeptidase-like 8	AT2G22990.1	sinapoylglucose 1 	LOC_Os11g27329.4	"OsSCP62 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr3g149280.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220976.1.S1_at	A	A2TS	POPTR_0001s39380	POPTR_0084s00230 (11)//POPTR_0001s39380 (11)	scaffold_1:38544733-38545299(+) (11)//scaffold_84:24511-25077(+) (11)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.220976.1.S1_x_at	A	A2TS	POPTR_0001s39380	POPTR_0084s00230 (11)//POPTR_0001s39380 (11)	scaffold_1:38544733-38545678(+) (11)//scaffold_84:24511-25455(+) (11)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.220977.1.S1_s_at	A	A2TS	POPTR_0019s02060	POPTR_0019s03050 (9)//POPTR_0019s02060 (9)	scaffold_19:1922521-1922553(-) (9)//scaffold_19:3081599-3081631(+) (9)	NA	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.220978.1.S1_s_at	A	A3TS	POPTR_0012s03790	POPTR_0012s03790 (11)//POPTR_1106s00200 (11)//POPTR_0019s14580 (11)	scaffold_11:1281078-1281155(+) (11)//scaffold_1106:5678-5755(+) (11)//scaffold_12:3024137-3024214(+) (11)//scaffold_19:15319740-15319817(-) (11)	NA	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0004371|glycerone kinase activity	NA
PtpAffx.220979.1.S1_at	A	A1TS	POPTR_0266s00010	POPTR_0266s00010 (11)	scaffold_266:22921-23413(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr6g008750.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.220979.1.S1_x_at	A	A1TS	POPTR_0266s00010	POPTR_0266s00010 (11)	scaffold_266:22921-23440(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr6g008750.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.220980.1.S1_s_at	A	A2TS	POPTR_0014s03750	POPTR_0014s03750 (11)//POPTR_0014s03770 (10)	scaffold_14:2988724-2989080(+) (11)//scaffold_14:3004920-3011553(+) (10)	POPTR_0014s03760 (8)	O49859	Cytochrome P450 82A4	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr6g009230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.220981.1.S1_at	A	A1TS	POPTR_0014s05970	POPTR_0014s05970 (11)	scaffold_14:4473785-4474044(+) (11)	NA	Q0WVE9	Probable plastidic glucose transporter 1	AT1G05030.1	Major facilitator superfamily protein 	LOC_Os09g23110.1	"transporter family protein, putative, expressed"	Medtr3g110090.1	Sugar transporter; Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.220986.1.S1_at	A	A2TS	POPTR_0004s04780	POPTR_0004s04780 (11)//POPTR_0335s00200 (11)	scaffold_335:16399-17007(+) (11)//scaffold_4:3545147-3545724(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g017900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220988.1.S1_at	A	A1TS	POPTR_0001s15370	POPTR_0001s15370 (11)	scaffold_1:12187899-12190035(+) (11)	NA	Q94JU3	COP9 signalosome complex subunit 7	AT1G02090.1	Proteasome component (PCI) domain protein 	LOC_Os07g30840.2	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22099.2.A1_s_at	A	A1TS	POPTR_0010s07560	POPTR_0010s07560 (11)	scaffold_10:8595318-8596277(+) (11)	NA	Q94AR8	3-isopropylmalate dehydratase	AT4G13430.1	isopropyl malate isomerase large subunit 1 	LOC_Os02g03260.1	"3-isopropylmalate dehydratase large subunit 2, putative, expressed"	Medtr1g065760.1	Cis-homoaconitase; ; ; 	GO:0008152|metabolic process	NA	NA
PtpAffx.220991.1.S1_at	A	A1TS	POPTR_0019s01380	POPTR_0019s01380 (11)	scaffold_19:1203967-1204098(+) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220993.1.S1_at	A	A1TS	POPTR_0121s00240	POPTR_0121s00240 (11)	scaffold_121:46600-47182(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220994.1.S1_at	A	A1TS	POPTR_0001s31620	POPTR_0001s31620 (10)	scaffold_1:29996020-29998152(-) (10)	NA	Q9C7N5	GDSL esterase/lipase At1g29660	AT1G29660.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220996.1.S1_s_at	A	A1TS	POPTR_0012s13390	POPTR_0012s13390 (11)	scaffold_12:13559727-13561330(+) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr1g129250.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.220998.1.S1_at	A	A1TS	POPTR_0012s13430	POPTR_0012s13430 (11)	scaffold_12:13585565-13586038(-) (11)	NA	Q9SCW4	Heat stress transcription factor B-2a	AT5G62020.1	heat shock transcription factor  B2A 	LOC_Os08g43334.2	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g010870.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.220998.1.S1_x_at	A	A1TS	POPTR_0012s13430	POPTR_0012s13430 (11)	scaffold_12:13585565-13585951(-) (11)	NA	Q9SCW4	Heat stress transcription factor B-2a	AT5G62020.1	heat shock transcription factor  B2A 	LOC_Os08g43334.2	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g010870.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.2210.1.A1_at	A	A1TS	POPTR_0001s18850	POPTR_0001s18850 (11)	scaffold_1:16026518-16026965(-) (11)	NA	B9GGL4	UPF0497 membrane protein 13	AT3G16300.1	Uncharacterised protein family (UPF0497) 	LOC_Os01g52610.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g015360.1	Plant integral membrane protein 	NA	NA	GO:0016020|membrane
PtpAffx.22100.1.S1_at	A	A1TS	POPTR_0030s00490	POPTR_0030s00490 (11)	scaffold_30:213758-214073(-) (11)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221001.1.S1_x_at	A	A1TS	POPTR_0006s06460	POPTR_0006s06460 (9)	scaffold_6:4613342-4613944(+) (11)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221003.1.S1_at	A	A1MS	POPTR_0006s03190	POPTR_0006s03190 (11)	scaffold_6:2007840-2008224(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.221005.1.S1_x_at	A	A2TS	POPTR_0008s14255	POPTR_0008s14255 (11)//POPTR_0211s00200 (10)	scaffold_211:3813-4002(+) (10)//scaffold_8:9439104-9439293(-) (11)	NA	NA	NA	AT3G18420.1	Protein prenylyltransferase superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221006.1.S1_x_at	A	A2TS	POPTR_0234s00215	POPTR_0234s00215 (11)//POPTR_0017s05230 (10)	scaffold_17:4050360-4050557(-) (10)//scaffold_234:11108-11305(+) (11)	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221007.1.S1_at	A	A1TS	POPTR_0006s29560	POPTR_0006s29560 (11)	scaffold_6:26887528-26888067(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221010.1.S1_s_at	A	A2TS	POPTR_0005s09050	POPTR_0005s09050 (11)//POPTR_0005s09060 (11)	scaffold_5:6352545-6352670(-) (11)//scaffold_5:6361797-6361922(-) (11)	NA	Q9FMW4	Putative GEM-like protein 8	AT5G23370.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os02g42440.1	"GEM, putative, expressed"	Medtr1g143990.1	Isopenicillin N synthetase; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221011.1.S1_s_at	A	A1TS	POPTR_0010s12440	POPTR_0010s12440 (11)	scaffold_10:12478914-12479169(-) (11)	NA	P07788	Spore coat protein A	AT1G23010.1	Cupredoxin superfamily protein 	LOC_Os01g03530.2	"multicopper oxidase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221012.1.S1_at	A	A1TS	POPTR_0008s22860	POPTR_0008s22860 (11)	scaffold_8:17743179-17752329(+) (11)//scaffold_8:17752181-17752700(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221013.1.S1_s_at	A	A1TS	POPTR_0014s05440	POPTR_0014s05440 (11)	scaffold_14:4079889-4081321(-) (11)	NA	NA	NA	AT1G64870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45200.1); Has 99 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g41160.1	expressed protein	Medtr7g135640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221014.1.S1_at	A	A1TS	POPTR_0027s00290	POPTR_0027s00290 (11)	scaffold_27:93047-93386(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221015.1.S1_x_at	A	A1MS	POPTR_0027s00300	POPTR_0027s00300 (10)	scaffold_27:96114-96565(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT2G25470.1	receptor like protein 21 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.221017.1.S1_at	A	A1TS	POPTR_0019s03250	POPTR_0019s03250 (11)	scaffold_19:3269141-3269866(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221018.1.S1_s_at	A	A1TS	POPTR_0001s02940	POPTR_0001s02940 (11)	scaffold_1:2332669-2333965(-) (11)	NA	NA	NA	AT5G46560.1	CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os03g01016.2	expressed protein	Medtr5g014190.1	hypothetical protein 	NA	NA	GO:0005639|integral to nuclear inner membrane
PtpAffx.221019.1.S1_at	A	A1TS	POPTR_0001s02980	POPTR_0001s02980 (9)	scaffold_1:2362150-2363137(+) (10)	NA	P57750	Phosphoacetylglucosamine mutase	AT5G18070.1	phosphoglucosamine mutase-related 	LOC_Os07g09720.1	"phosphoacetylglucosamine mutase, putative, expressed"	Medtr5g014150.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.221021.1.S1_s_at	A	A2TS	POPTR_0017s05730	POPTR_0017s05730 (11)//POPTR_0017s05710 (10)	scaffold_17:4470954-4471520(+) (10)//scaffold_17:4484253-4484819(+) (11)	NA	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT3G59510.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g43250.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr2g118400.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.221022.1.S1_s_at	A	A1TS	POPTR_0015s00830	POPTR_0015s00830 (11)	scaffold_15:473746-474205(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G00820.1	IQ-domain 17 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr1g122110.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221024.1.S1_at	A	A1TS	POPTR_0015s00750	POPTR_0015s00750 (11)	scaffold_15:435714-436036(+) (11)	NA	NA	NA	AT5G54180.1	plastid transcriptionally active 15 	LOC_Os02g39040.1	"mTERF domain containing protein, expressed"	Medtr3g122740.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221026.1.S1_at	A	A2TS	POPTR_0014s05990	POPTR_0176s00200 (9)//POPTR_0014s05990 (9)	scaffold_14:4486883-4487380(-) (9)//scaffold_176:2612-3109(-) (9)	NA	NA	NA	AT3G60590.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g45200.2	"DNA binding protein, putative, expressed"	Medtr4g028670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221027.1.S1_at	A	A1TS	POPTR_0014s05970	POPTR_0014s05970 (11)	scaffold_14:4476296-4478137(+) (11)	NA	Q0WVE9	Probable plastidic glucose transporter 1	AT1G05030.1	Major facilitator superfamily protein 	LOC_Os09g23110.1	"transporter family protein, putative, expressed"	Medtr3g110090.1	Sugar transporter; Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.221028.1.S1_at	A	A1TS	POPTR_0014s05960	POPTR_0014s05960 (11)	scaffold_14:4469226-4472573(+) (11)	NA	NA	NA	AT1G73440.1	calmodulin-related 	LOC_Os04g45180.1	"EF hand family protein, expressed"	Medtr4g029260.1	Ubiquitin interacting motif; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221029.1.S1_at	A	A1TS	POPTR_0014s05930	POPTR_0014s05930 (11)	scaffold_14:4439193-4439691(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g029400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221030.1.S1_at	A	A1MS	POPTR_0014s05970	POPTR_0014s05970 (11)	scaffold_14:4478085-4478706(+) (11)	NA	Q0WVE9	Probable plastidic glucose transporter 1	AT1G05030.1	Major facilitator superfamily protein 	LOC_Os09g23110.1	"transporter family protein, putative, expressed"	Medtr3g110090.1	Sugar transporter; Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.221030.1.S1_s_at	A	A1TS	POPTR_0014s05970	POPTR_0014s05970 (11)	scaffold_14:4478136-4478660(+) (11)	NA	Q0WVE9	Probable plastidic glucose transporter 1	AT1G05030.1	Major facilitator superfamily protein 	LOC_Os09g23110.1	"transporter family protein, putative, expressed"	Medtr3g110090.1	Sugar transporter; Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.221031.1.S1_at	A	A1TS	POPTR_0014s06000	POPTR_0014s06000 (11)	scaffold_14:4496314-4496782(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221032.1.S1_a_at	A	A2TS	POPTR_0176s00210	POPTR_1353s00210 (9)//POPTR_0176s00210 (9)	scaffold_1353:4929-4961(-) (9)//scaffold_1353:5037-5069(-) (9)//scaffold_176:21712-21744(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221034.1.S1_at	A	A1TS	POPTR_0014s06050	POPTR_0014s06050 (11)	scaffold_14:4524395-4524435(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221034.1.S1_x_at	A	A1TS	POPTR_0014s06050	POPTR_0014s06050 (11)	scaffold_14:4523863-4524435(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221036.1.S1_at	A	A1TS	POPTR_0014s06070	POPTR_0014s06070 (11)	scaffold_14:4536400-4537037(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221037.1.S1_s_at	A	A1TS	POPTR_0014s06090	POPTR_0014s06090 (11)	scaffold_14:4570550-4570585(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221038.1.S1_at	A	A1TS	POPTR_0014s05840	POPTR_0014s05840 (11)	scaffold_14:4373411-4374118(-) (11)	NA	NA	NA	AT3G60670.1	PLATZ transcription factor family protein 	LOC_Os02g09070.1	"zinc-binding protein, putative, expressed"	Medtr8g122390.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.221039.1.S1_at	A	A1TS	POPTR_0014s05820	POPTR_0014s05820 (11)	scaffold_14:4361612-4362483(-) (11)	NA	Q8VYT5	F-box protein At5g07670	AT5G07670.1	RNI-like superfamily protein 	LOC_Os02g44104.1	"F-box family protein, putative, expressed"	Medtr2g026110.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221040.1.S1_at	A	A1TS	POPTR_0014s05800	POPTR_0014s05800 (11)	scaffold_14:4352533-4353478(-) (11)	NA	NA	NA	AT2G41870.1	Remorin family protein 	LOC_Os07g38170.1	"remorin, putative, expressed"	Medtr7g110620.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221041.1.S1_at	A	A1MS	POPTR_0014s05790	POPTR_0014s05790 (11)	scaffold_14:4340665-4340796(+) (11)	NA	A5YKK6	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.1	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221041.1.S1_x_at	A	A1MS	POPTR_0014s05790	POPTR_0014s05790 (11)	scaffold_14:4340665-4340826(+) (11)	NA	A5YKK6	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.1	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221042.1.S1_at	A	A1TS	POPTR_0014s05760	POPTR_0014s05760 (11)	scaffold_14:4311185-4311334(+) (11)	NA	O49741	GATA transcription factor 2	AT2G45050.1	GATA transcription factor 2 	LOC_Os10g40810.1	"GATA zinc finger domain containing protein, expressed"	Medtr3g130480.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.221043.1.S1_at	A	A1TS	POPTR_0014s05720	POPTR_0014s05720 (11)	scaffold_14:4265170-4265691(+) (11)	NA	P29136	Metalloendoproteinase 1	AT2G45040.1	Matrixin family protein 	LOC_Os10g40830.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr8g005690.1	Peptidoglycan binding-like 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.221044.1.S1_at	A	A1TS	POPTR_0014s05710	POPTR_0014s05710 (11)	scaffold_14:4261623-4262094(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G54070.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221044.1.S1_s_at	A	A1TS	POPTR_0014s05710	POPTR_0014s05710 (11)	scaffold_14:4256224-4261768(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G54070.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221045.1.S1_at	A	A3TS	POPTR_0014s05710	POPTR_0014s05710 (11)//POPTR_1049s00210 (11)//POPTR_0014s05700 (9)	scaffold_1049:61-7131(+) (11)//scaffold_14:4252043-4259486(+) (11)//scaffold_14:4254141-4259452(+) (9)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G54070.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221046.1.S1_at	A	A1TS	POPTR_0014s05690	POPTR_0014s05690 (11)	scaffold_14:4237926-4238314(-) (11)	NA	Q7XT42	Squamosa promoter-binding-like protein 7	AT1G27370.4	squamosa promoter binding protein-like 10 	LOC_Os04g46580.1	"OsSPL7 - SBP-box gene family member, expressed"	Medtr7g041150.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.221047.1.S1_at	A	A1TS	POPTR_0014s05680	POPTR_0014s05680 (11)	scaffold_14:4222952-4223134(+) (11)	NA	Q8GXL3	Squamosa promoter-binding-like protein 8	AT1G02065.1	squamosa promoter binding protein-like 8 	LOC_Os06g44860.1	"OsSPL10 - SBP-box gene family member, expressed"	Medtr8g005760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.221048.1.S1_at	A	A1MS	POPTR_0014s05660	POPTR_0014s05660 (10)	scaffold_14:4209256-4210391(+) (10)	NA	O48905	"Malate dehydrogenase, cytoplasmic"	AT5G43330.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr1g042850.1	"Malate dehydrogenase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221049.1.S1_at	A	A1TS	POPTR_0014s05620	POPTR_0014s05620 (11)	scaffold_14:4186964-4187788(+) (11)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	NA	NA	Medtr7g047480.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.221050.1.S1_x_at	A	A1TA	POPTR_0014s05600	POPTR_0014s05600 (11)	scaffold_14:4177987-4178058(+) (11)//scaffold_14:4178107-4178142(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221051.1.S1_at	A	A1TS	POPTR_0014s05590	POPTR_0014s05590 (11)	scaffold_14:4175553-4176591(+) (11)	NA	Q7XJM2	"Carotenoid cleavage dioxygenase 7, chloroplastic"	AT2G44990.1	carotenoid cleavage dioxygenase 7 	LOC_Os04g46470.1	"carotenoid cleavage dioxygenase 7, chloroplast precursor, putative, expressed"	Medtr7g040830.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221052.1.S1_at	A	A1TS	POPTR_0014s05590	POPTR_0014s05590 (10)	scaffold_14:4172317-4172906(+) (11)	NA	Q7XJM2	"Carotenoid cleavage dioxygenase 7, chloroplastic"	AT2G44990.1	carotenoid cleavage dioxygenase 7 	LOC_Os04g46470.1	"carotenoid cleavage dioxygenase 7, chloroplast precursor, putative, expressed"	Medtr7g040830.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221053.1.S1_at	A	A1TS	POPTR_0014s05570	POPTR_0014s05570 (10)	scaffold_14:4163373-4165183(-) (11)	NA	Q9CXF7	Chromodomain-helicase-DNA-binding protein 1-like	AT2G44980.2	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os03g01200.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g040740.1	"SNF2-related; Helicase, C-terminal "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.221054.1.S1_at	A	A1TS	POPTR_0014s05570	POPTR_0014s05570 (11)	scaffold_14:4158764-4161440(-) (11)	NA	Q9CXF7	Chromodomain-helicase-DNA-binding protein 1-like	AT2G44980.2	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os03g01200.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g040740.1	"SNF2-related; Helicase, C-terminal "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.221055.1.S1_at	A	A1TS	POPTR_0014s05540	POPTR_0014s05540 (11)	scaffold_14:4147875-4148191(-) (11)//scaffold_646:83-399(+) (11)	NA	Q43163	Chalcone synthase 1B	AT1G02050.1	Chalcone and stilbene synthase family protein 	LOC_Os10g34360.1	"stilbene synthase, putative, expressed"	Medtr4g108490.1	"Chalcone and stilbene synthases, C-terminal "	GO:0009058|biosynthetic process	GO:0008415|acyltransferase activity	NA
PtpAffx.221056.1.S1_at	A	A1MS	POPTR_0014s05510	POPTR_0014s05510 (11)	scaffold_14:4129659-4131752(-) (11)	NA	Q8RXD6	E3 ubiquitin-protein ligase BRE1-like 1	AT2G44950.1	histone mono-ubiquitination 1 	LOC_Os04g46450.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g040330.1	"Zinc finger, DksA/TraR C4-type; Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221056.1.S1_x_at	A	A1MS	POPTR_0014s05510	POPTR_0014s05510 (11)	scaffold_14:4129659-4131767(-) (11)	NA	Q8RXD6	E3 ubiquitin-protein ligase BRE1-like 1	AT2G44950.1	histone mono-ubiquitination 1 	LOC_Os04g46450.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g040330.1	"Zinc finger, DksA/TraR C4-type; Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221057.1.S1_s_at	A	A1TS	POPTR_0014s05500	POPTR_0014s05500 (11)	scaffold_14:4117323-4117576(+) (11)	NA	Q8LBQ7	Ethylene-responsive transcription factor ERF034	AT2G44940.1	Integrase-type DNA-binding superfamily protein 	LOC_Os10g41130.1	"AP2 domain containing protein, expressed"	Medtr7g040320.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.221058.1.S1_at	A	A2MS	POPTR_0014s05490	POPTR_0014s05490 (10)//POPTR_0014s05470 (9)	scaffold_14:4096388-4096662(+) (9)//scaffold_14:4108176-4108450(+) (10)	NA	Q03363	DnaJ protein homolog 1 (Fragment)	AT5G22060.1	DNAJ homologue 2 	LOC_Os02g43930.1	"chaperone protein dnaJ, putative, expressed"	Medtr8g006170.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.221059.1.S1_s_at	A	A1TS	POPTR_0014s05470	POPTR_0014s05470 (11)	scaffold_14:4096683-4096935(+) (11)	NA	P42825	Chaperone protein dnaJ 2	AT5G22060.1	DNAJ homologue 2 	LOC_Os04g46390.2	"chaperone protein dnaJ, putative, expressed"	Medtr8g006170.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	NA
PtpAffx.221061.1.S1_at	A	A2TS	POPTR_0014s05370	POPTR_0014s05370 (9)//POPTR_0014s05420 (9)	scaffold_14:4034875-4035702(+) (9)//scaffold_14:4064918-4065747(+) (9)	NA	Q0JIC2	Transcription factor GAMYB	AT3G60460.1	myb-like HTH transcriptional regulator family protein 	LOC_Os04g46384.1	"MYB family transcription factor, putative"	Medtr8g006230.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221062.1.S1_at	A	A1TS	POPTR_0014s05410	POPTR_0014s05410 (10)	scaffold_14:4062590-4063049(+) (11)	POPTR_0014s05360 (7)	NA	NA	AT4G13970.1	zinc ion binding 	LOC_Os07g12520.1	"zinc ion binding protein, putative, expressed"	Medtr4g110340.1	"zinc ion binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221063.1.S1_at	A	A2TS	POPTR_0014s05360	POPTR_0014s05360 (10)//POPTR_0014s05410 (10)	scaffold_14:4029288-4030005(+) (10)//scaffold_14:4059316-4060033(+) (10)	NA	NA	NA	AT4G13970.1	zinc ion binding 	LOC_Os07g12520.1	"zinc ion binding protein, putative, expressed"	Medtr4g110340.1	"zinc ion binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221064.1.S1_at	A	A1TS	POPTR_0014s05310	POPTR_0014s05310 (11)	scaffold_14:4014507-4014925(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os05g15230.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g009850.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221065.1.S1_at	A	A1TS	POPTR_0014s05300	POPTR_0014s05300 (11)	scaffold_14:4006798-4007214(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221066.1.S1_at	A	A1TS	POPTR_0014s05250	POPTR_0014s05250 (11)	scaffold_14:3979732-3980231(+) (11)	NA	Q9LY41	E3 ubiquitin-protein ligase ATL4	AT3G60220.1	TOXICOS EN LEVADURA 4 	LOC_Os02g46340.1	"RING-H2 finger protein ATL3J, putative, expressed"	Medtr8g008990.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221068.1.S1_at	A	A1TS	POPTR_0014s05210	POPTR_0014s05210 (11)	scaffold_14:3963156-3965576(+) (11)	NA	O80505	"Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase"	AT2G44660.1	"ALG6, ALG8 glycosyltransferase family "	LOC_Os02g46320.1	"glucosyltransferase, putative, expressed"	Medtr5g085330.1	"ALG6, ALG8 glycosyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.221069.1.S1_at	A	A1TS	POPTR_0014s05170	POPTR_0014s05170 (11)	scaffold_14:3942792-3943384(-) (11)	NA	Q9LFC5	Pentatricopeptide repeat-containing protein At5g01110	AT5G01110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g20510.1	"auxin efflux carrier, putative"	Medtr4g155160.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221071.1.S1_at	A	A1TS	POPTR_0014s05150	POPTR_0014s05150 (11)	scaffold_14:3920437-3921656(-) (11)	NA	Q76E23	Eukaryotic translation initiation factor 4G	AT3G60240.2	eukaryotic translation initiation factor 4G 	LOC_Os07g36940.2	"eukaryotic translation initiation factor 4G, putative, expressed"	Medtr8g008440.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.221072.1.S1_at	A	A1TS	POPTR_0014s05120	POPTR_0014s05120 (11)	scaffold_14:3904273-3904765(+) (11)	NA	NA	NA	AT4G17080.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os10g41534.3	"ICE-like protease p20 domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221072.1.S1_x_at	A	A1TS	POPTR_0014s05120	POPTR_0014s05120 (11)	scaffold_14:3904044-3904765(+) (11)	NA	NA	NA	AT4G17080.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os10g41534.3	"ICE-like protease p20 domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221073.1.S1_at	A	A1TS	POPTR_0014s05090	POPTR_0014s05090 (11)	scaffold_14:3882014-3882650(-) (11)	NA	Q05047	Secologanin synthase	AT5G24910.1	"cytochrome P450, family 714, subfamily A, polypeptide 1 "	LOC_Os12g02640.1	"cytochrome P450 72A1, putative, expressed"	Medtr4g009130.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221074.1.S1_at	A	A1TS	POPTR_0014s05040	POPTR_0014s05040 (11)	scaffold_14:3863017-3864251(-) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.221075.1.S1_at	A	A1TS	POPTR_0014s05040	POPTR_0014s05040 (11)	scaffold_14:3862269-3862692(-) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.221076.1.S1_at	A	A1TS	POPTR_0014s05020	POPTR_0014s05020 (11)	scaffold_14:3854563-3856107(-) (11)	NA	NA	NA	AT4G17070.1	peptidyl-prolyl cis-trans isomerases 	LOC_Os03g01090.1	"peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed"	Medtr5g013700.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.221077.1.S1_at	A	A1TS	POPTR_0014s05010	POPTR_0014s05010 (11)	scaffold_14:3849752-3850346(+) (11)	NA	NA	NA	AT2G44730.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os10g41460.1	"transcription factor like protein, putative, expressed"	Medtr7g092760.1	MADF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221077.1.S1_x_at	A	A1TS	POPTR_0014s05010	POPTR_0014s05010 (11)	scaffold_14:3849817-3850345(+) (11)	NA	NA	NA	AT2G44730.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os10g41460.1	"transcription factor like protein, putative, expressed"	Medtr7g092760.1	MADF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221078.1.S1_at	A	A1TS	POPTR_0014s04990	POPTR_0014s04990 (11)	scaffold_14:3835061-3837131(-) (11)	NA	NA	NA	AT5G51160.1	Ankyrin repeat family protein 	LOC_Os06g19370.1	"cadmium tolerance factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221079.1.S1_at	A	A1TS	POPTR_0014s05000	POPTR_0014s05000 (11)	scaffold_14:3839553-3840027(-) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT5G51160.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr8g043220.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221080.1.S1_s_at	A	A1TS	POPTR_0014s04990	POPTR_0014s04990 (11)	scaffold_14:3829392-3835663(-) (11)	NA	NA	NA	AT5G51160.1	Ankyrin repeat family protein 	LOC_Os06g19370.1	"cadmium tolerance factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221081.1.S1_at	A	A1TS	POPTR_0014s04970	POPTR_0014s04970 (11)	scaffold_14:3827268-3827744(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g19110.1	"cadmium tolerance factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221082.1.S1_at	A	A1TS	POPTR_0014s04960	POPTR_0014s04960 (11)	scaffold_14:3825359-3825571(-) (11)	NA	NA	NA	AT5G51160.1	Ankyrin repeat family protein 	LOC_Os06g19110.1	"cadmium tolerance factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221082.1.S1_s_at	A	A1TS	POPTR_0014s04960	POPTR_0014s04960 (10)	scaffold_14:3825522-3825840(-) (11)	NA	NA	NA	AT5G51160.1	Ankyrin repeat family protein 	LOC_Os06g19110.1	"cadmium tolerance factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221084.1.S1_at	A	A1TS	POPTR_0014s04920	POPTR_0014s04920 (11)	scaffold_14:3810531-3810827(+) (11)	NA	Q8LPS6	Pentatricopeptide repeat-containing protein At1g02150	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g46010.1	"PPR repeat domain containing protein, putative, expressed"	AC202489_31.1	Pentatricopeptide repeat AC202489.10 131297-133733 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221084.1.S1_x_at	A	A1TS	POPTR_0014s04920	POPTR_0014s04920 (11)	scaffold_14:3810324-3810825(+) (11)	NA	Q8LPS6	Pentatricopeptide repeat-containing protein At1g02150	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g46010.1	"PPR repeat domain containing protein, putative, expressed"	AC202489_31.1	Pentatricopeptide repeat AC202489.10 131297-133733 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221085.1.S1_at	A	A1TS	POPTR_0014s04910	POPTR_0014s04910 (11)	scaffold_14:3786895-3787363(-) (11)	NA	Q29KH2	DNA repair and recombination protein RAD54-like	AT1G05490.1	chromatin remodeling 31 	LOC_Os05g32610.1	"required to maintain repression 1, putative, expressed"	Medtr3g097020.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.221086.1.S1_at	A	A1TS	POPTR_0014s04890	POPTR_0014s04890 (11)	scaffold_14:3784428-3784536(+) (11)	NA	Q93WY4	Probable WRKY transcription factor 12	AT2G44745.1	WRKY family transcription factor 	LOC_Os04g46060.1	OsWRKY36 - Superfamily of TFs having WRKY and zinc finger domains	AC202489_11.1	DNA-binding WRKY AC202489.10 68133-74292 E EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.221087.1.S1_at	A	A1TS	POPTR_0014s04840	POPTR_0014s04840 (11)	scaffold_14:3740389-3741218(+) (11)	NA	Q9LXE5	DNA (cytosine-5)-methyltransferase DRM1	AT5G15380.1	domains rearranged methylase 1 	LOC_Os03g02010.3	"DNA methyltransferase protein, putative, expressed"	Medtr6g005480.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221088.1.S1_at	A	A1MS	POPTR_0014s04810	POPTR_0014s04810 (10)	scaffold_14:3714193-3714880(+) (10)	NA	Q8L785	"Glycyl-tRNA synthetase 2, chloroplastic/mitochondrial"	AT3G48110.1	glycine-tRNA ligases 	LOC_Os06g01400.1	"glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006426|glycyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004820|glycine-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.221089.1.S1_at	A	A1TS	POPTR_0014s04810	POPTR_0014s04810 (11)	scaffold_14:3711256-3711515(+) (11)	NA	Q8L785	"Glycyl-tRNA synthetase 2, chloroplastic/mitochondrial"	AT3G48110.1	glycine-tRNA ligases 	LOC_Os06g01400.1	"glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006426|glycyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004820|glycine-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.221090.1.S1_at	A	A1TS	POPTR_0014s04800	POPTR_0014s04800 (11)	scaffold_14:3707160-3708664(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.221091.1.S1_at	A	A1TS	POPTR_0014s04770	POPTR_0014s04770 (11)	scaffold_14:3675679-3677513(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221092.1.S1_at	A	A1TS	POPTR_0014s04750	POPTR_0014s04750 (11)	scaffold_14:3666963-3667391(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.221093.1.S1_at	A	A1TS	POPTR_0014s04740	POPTR_0014s04740 (9)	scaffold_14:3662483-3664841(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221094.1.S1_at	A	A1TS	POPTR_1759s00200	POPTR_1759s00200 (11)	scaffold_1759:2845-3142(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221096.1.S1_at	A	A1MS	POPTR_0014s04690	POPTR_0014s04690 (9)	scaffold_14:3594317-3594646(+) (9)	NA	NA	NA	AT1G02120.1	GRAM domain family protein 	LOC_Os07g30940.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221097.1.S1_at	A	A1TS	POPTR_0014s04680	POPTR_0014s04680 (10)	scaffold_14:3577496-3577974(-) (10)	NA	Q0DCT8	Protein kinase G11A	AT2G44830.1	Protein kinase superfamily protein 	LOC_Os04g46180.2	"AGC_PVPK_like_kin82y.11 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221098.1.S1_at	A	A1TS	POPTR_0014s04660	POPTR_0014s04660 (9)	scaffold_14:3558273-3560737(+) (11)	NA	Q8BYR1	Leucine carboxyl methyltransferase 2	AT1G02100.1	Leucine carboxyl methyltransferase 	LOC_Os06g04820.1	"leucine carboxyl methyltransferase 1, putative, expressed"	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.221099.1.S1_at	A	A1MS	POPTR_0014s04645	POPTR_0014s04645 (11)	scaffold_14:3544681-3545211(-) (11)	NA	O80397	Mitogen-activated protein kinase kinase 4	AT1G51660.1	mitogen-activated protein kinase kinase 4 	LOC_Os06g09180.1	"OsMKK5 - putative MAPKK based on amino acid sequence homology, expressed"	Medtr4g023250.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2211.1.S1_at	A	A1TS	POPTR_0001s02960	POPTR_0001s02960 (11)	scaffold_1:2345956-2346325(-) (11)	NA	NA	NA	AT3G59840.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 72 Blast hits to 72 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g42110.1	"allyl alcohol dehydrogenase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221100.1.S1_at	A	A1TS	POPTR_0014s04640	POPTR_0014s04640 (11)	scaffold_14:3541053-3541563(+) (11)	NA	Q8L9K1	Ethylene-responsive transcription factor 13	AT2G44840.1	ethylene-responsive element binding factor 13 	LOC_Os04g46220.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr8g105160.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.221101.1.S1_at	A	A1TS	POPTR_0014s04630	POPTR_0014s04630 (11)	scaffold_14:3536221-3536717(+) (11)	NA	Q8L9K1	Ethylene-responsive transcription factor 13	AT2G44840.1	ethylene-responsive element binding factor 13 	LOC_Os02g43790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr8g105160.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.221102.1.S1_at	A	A1TS	POPTR_0014s04620	POPTR_0014s04620 (11)	scaffold_14:3531139-3531554(+) (11)	NA	Q8L9K1	Ethylene-responsive transcription factor 13	AT2G44840.1	ethylene-responsive element binding factor 13 	LOC_Os04g46220.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr8g105160.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.221104.1.S1_at	A	A1TS	POPTR_0014s04590	POPTR_0014s04590 (11)	scaffold_14:3522265-3522518(-) (11)	NA	P10973	Non-specific lipid-transfer protein A	AT4G33355.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os08g03690.1	"LTPL24 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036840.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221105.1.S1_at	A	A1TS	POPTR_0014s04580	POPTR_0014s04580 (9)	scaffold_14:3520583-3520993(-) (11)	NA	NA	NA	AT2G44850.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881); Has 106 Blast hits to 106 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os02g43810.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221106.1.S1_at	A	A1TS	POPTR_0014s04570	POPTR_0014s04570 (11)	scaffold_14:3511603-3512626(-) (11)	NA	Q9LY32	"ATPase 7, plasma membrane-type"	AT3G60330.2	H(+)-ATPase 7 	LOC_Os12g44150.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.221107.1.S1_at	A	A1MS	POPTR_0014s04560	POPTR_0014s04560 (11)	scaffold_14:3508340-3508899(-) (11)	NA	Q1PEU4	Pentatricopeptide repeat-containing protein At2g44880	AT2G44880.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os03g60690.1	"pentatricopeptide, putative, expressed"	Medtr7g005540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221108.1.S1_at	A	A1TS	POPTR_0014s04550	POPTR_0014s04550 (11)	scaffold_14:3505030-3505755(-) (11)	NA	NA	NA	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g01150.1	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221110.1.S1_at	A	A1TS	POPTR_0014s04520	POPTR_0014s04520 (11)	scaffold_14:3489240-3489633(+) (11)	NA	Q54NC5	Probable small nuclear ribonucleoprotein Sm D2	AT3G62840.2	Small nuclear ribonucleoprotein family protein 	LOC_Os05g24970.1	"LSM domain containing protein, expressed"	Medtr4g156540.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221111.1.S1_at	A	A1TS	POPTR_0014s04480	POPTR_0014s04480 (11)	scaffold_14:3478039-3478565(+) (11)	NA	NA	NA	AT3G60380.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink). 	LOC_Os04g46330.1	expressed protein	Medtr8g105280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221112.1.S1_at	A	A1TS	POPTR_0014s04460	POPTR_0014s04460 (11)	scaffold_14:3467097-3467882(+) (11)	NA	P46602	Homeobox-leucine zipper protein HAT3	AT3G60390.1	homeobox-leucine zipper protein 3 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.221112.1.S1_s_at	A	A1TS	POPTR_0014s04460	POPTR_0014s04460 (11)	scaffold_14:3466722-3466956(+) (11)	NA	P46602	Homeobox-leucine zipper protein HAT3	AT3G60390.1	homeobox-leucine zipper protein 3 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.221113.1.S1_at	A	A1TS	POPTR_0014s04440	POPTR_0014s04440 (11)	scaffold_14:3445088-3446654(-) (11)	NA	NA	NA	AT3G60400.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g22670.1	"mTERF domain containing protein, expressed"	Medtr7g090250.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221114.1.S1_x_at	A	A1TS	POPTR_0014s04430	POPTR_0014s04430 (11)	scaffold_14:3435148-3436180(-) (11)	NA	NA	NA	AT3G60410.3	Protein of unknown function (DUF1639) 	LOC_Os05g47810.1	expressed protein	Medtr8g105330.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221115.1.S1_at	A	A1TS	POPTR_0014s04420	POPTR_0014s04420 (11)	scaffold_14:3430697-3431126(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g105330.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221116.1.S1_at	A	A1MS	POPTR_0014s04410	POPTR_0014s04410 (10)	scaffold_14:3427890-3428302(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221117.1.S1_at	A	A1TS	POPTR_0014s04390	POPTR_0014s04390 (10)	scaffold_14:3423628-3424258(+) (11)	NA	O64890	Endoglucanase 13	AT2G44550.1	glycosyl hydrolase 9B10 	LOC_Os01g12030.1	"endoglucanase precursor, putative, expressed"	Medtr5g093090.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.221118.1.S1_at	A	A1TS	POPTR_0014s04300	POPTR_0014s04300 (11)	scaffold_14:3359143-3359881(+) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g41930.2	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.221120.1.S1_at	A	A1MS	POPTR_0014s04250	POPTR_0014s04250 (11)	scaffold_14:3334787-3334993(-) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.221121.1.S1_at	A	A1MS	POPTR_0014s04240	POPTR_0014s04240 (11)	scaffold_14:3331042-3331230(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g116990.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221122.1.S1_at	A	A1TS	POPTR_0014s04200	POPTR_0014s04200 (11)	scaffold_14:3310236-3311154(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221123.1.S1_at	A	A1TS	POPTR_0014s04180	POPTR_0014s04180 (11)	scaffold_14:3302821-3304494(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221124.1.S1_at	A	A1TS	POPTR_0014s04160	POPTR_0014s04160 (11)	scaffold_14:3294016-3294148(-) (11)	NA	Q9FZF1	Peroxisomal membrane protein 11A	AT1G47750.1	peroxin 11A 	LOC_Os03g19010.1	"peroxisomal biogenesis factor 11, putative, expressed"	NA	NA	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
PtpAffx.221124.1.S1_s_at	A	A1TS	POPTR_0014s04160	POPTR_0014s04160 (11)	scaffold_14:3293807-3293940(-) (11)	NA	Q9FZF1	Peroxisomal membrane protein 11A	AT1G47750.1	peroxin 11A 	LOC_Os03g19010.1	"peroxisomal biogenesis factor 11, putative, expressed"	NA	NA	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
PtpAffx.221125.1.S1_at	A	A1TS	POPTR_0014s04140	POPTR_0014s04140 (9)	scaffold_14:3289962-3290304(+) (9)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008720.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221127.1.S1_at	A	A1MS	POPTR_0014s04100	POPTR_0014s04100 (11)	scaffold_14:3267384-3267519(+) (11)	NA	Q9ZU75	Probable NEDD8-conjugating enzyme Ubc12-like	AT2G18600.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os08g28680.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221129.1.S1_at	A	A1TS	POPTR_0014s04060	POPTR_0014s04060 (11)	scaffold_14:3225862-3226443(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221130.1.S1_at	A	A1TS	POPTR_0014s04000	POPTR_0014s04000 (11)	scaffold_14:3182248-3182652(+) (11)	NA	NA	NA	AT4G36830.1	GNS1/SUR4 membrane protein family 	LOC_Os12g43890.1	"GNS1/SUR4 membrane family protein, putative, expressed"	Medtr5g019270.1	GNS1/SUR4 membrane protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.221131.1.S1_at	A	A1TS	POPTR_0014s03970	POPTR_0014s03970 (11)	scaffold_14:3155790-3156268(+) (11)	NA	Q9LN69	Putative pentatricopeptide repeat-containing protein At1g19290	AT1G19290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g19390.1	"PPR repeat containing protein, expressed"	Medtr2g056710.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221132.1.S1_at	A	A1TS	POPTR_0014s03950	POPTR_0014s03950 (11)	scaffold_14:3144104-3144572(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221133.1.S1_at	A	A1TS	POPTR_0014s03940	POPTR_0014s03940 (11)	scaffold_14:3139663-3140151(-) (11)	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os06g41980.1	"LYK8, putative, expressed"	Medtr5g019000.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221134.1.S1_at	A	A1TS	POPTR_0014s03930	POPTR_0014s03930 (11)	scaffold_14:3137815-3138912(+) (11)	NA	P0C7Q8	Protein DA1	AT1G19270.1	DA1 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.221135.1.S1_at	A	A1TS	POPTR_0014s03920	POPTR_0014s03920 (11)	scaffold_14:3128906-3130499(+) (11)	NA	Q5EAF2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 11"	AT1G47510.1	inositol polyphosphate 5-phosphatase 11 	LOC_Os03g42810.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr1g025830.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221136.1.S1_at	A	A1TS	POPTR_0014s03890	POPTR_0014s03890 (11)	scaffold_14:3111357-3112411(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221137.1.S1_at	A	A1TS	POPTR_0014s03860	POPTR_0014s03860 (11)	scaffold_14:3085062-3086244(-) (11)	POPTR_0002s13280 (6)	Q9SX85	Exocyst complex component SEC3A	AT1G47550.1	exocyst complex component sec3A 	LOC_Os03g42750.1	"roothairless 1, putative, expressed"	Medtr1g025760.1	"Strong similarity to F16N3.18 from, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221138.1.S1_at	A	A1TS	POPTR_0014s03850	POPTR_0014s03850 (11)	scaffold_14:3074007-3075786(+) (11)	NA	NA	NA	AT4G19390.1	Uncharacterised protein family (UPF0114) 	LOC_Os03g52910.1	"uncharacterized UPF0114 domain containing protein, expressed"	Medtr4g115960.1	Uncharacterized protein UPF0114 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221139.1.S1_at	A	A1TS	POPTR_0014s03810	POPTR_0014s03810 (11)	scaffold_14:3046179-3046670(+) (11)	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221140.1.S1_at	A	A1TS	POPTR_0014s03800	POPTR_0014s03800 (11)	scaffold_14:3036073-3036355(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221141.1.S1_at	A	A1TS	POPTR_0014s03790	POPTR_0014s03790 (10)	scaffold_14:3027646-3028087(-) (11)	NA	P90648	Myosin heavy chain kinase B	AT2G26490.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52870.1	"WD-40 repeat family protein, putative, expressed"	Medtr1g025560.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221142.1.S1_at	A	A1TS	POPTR_0014s03780	POPTR_0014s03780 (11)	scaffold_14:3025126-3026148(+) (11)	NA	Q9LK03	Proline-rich receptor-like protein kinase PERK2	AT3G13690.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	Medtr1g025550.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221145.1.S1_at	A	A1TS	POPTR_0014s03740	POPTR_0014s03740 (11)	scaffold_14:2978828-2979404(+) (11)	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr6g036420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.221146.1.S1_s_at	A	A3TS	POPTR_0014s03690	POPTR_0014s03700 (11)//POPTR_0014s03730 (11)//POPTR_0014s03690 (11)	scaffold_14:2942411-2942774(+) (11)//scaffold_14:2953870-2954233(+) (11)//scaffold_14:2969612-2969975(+) (11)	NA	O49858	Cytochrome P450 82A3	AT4G31950.1	"cytochrome P450, family 82, subfamily C, polypeptide 3 "	LOC_Os09g26940.1	"cytochrome P450, putative, expressed"	Medtr6g036230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.221147.1.S1_at	A	A1TS	POPTR_0014s03660	POPTR_0014s03660 (11)	scaffold_14:2920758-2921310(+) (11)	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26940.1	"cytochrome P450, putative, expressed"	Medtr6g036230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.221148.1.S1_at	A	A1TS	POPTR_0014s03650	POPTR_0014s03650 (11)	scaffold_14:2911649-2914085(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT5G42630.1	Homeodomain-like superfamily protein 	LOC_Os03g55760.1	"MYB family transcription factor, putative, expressed"	Medtr1g025490.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221149.1.S1_at	A	A1TS	POPTR_0014s03620	POPTR_0014s03620 (11)	scaffold_14:2894260-2895486(+) (11)	NA	Q8RYD1	B3 domain-containing protein REM16	AT4G33280.1	AP2/B3-like transcriptional factor family protein 	LOC_Os12g40120.1	"B3 DNA binding domain containing protein, expressed"	Medtr1g025470.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.221150.1.S1_at	A	A1TS	POPTR_0014s03610	POPTR_0014s03610 (11)	scaffold_14:2890012-2890905(+) (11)	NA	Q2R9D2	B3 domain-containing protein Os11g0197600	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	LOC_Os11g09160.1	"B3 DNA binding domain containing protein, expressed"	Medtr1g025230.1	"Transcriptional factor B3; TonB box, N-terminal "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.221151.1.S1_at	A	A1TS	POPTR_0014s03600	POPTR_0014s03600 (10)	scaffold_14:2878317-2879218(-) (10)	NA	Q9XIL9	Pollen-specific leucine-rich repeat extensin-like protein 3	AT2G15880.1	Leucine-rich repeat (LRR) family protein 	LOC_Os12g35710.1	"uncharacterized protein At4g06744 precursor, putative, expressed"	Medtr3g148740.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.221153.1.S1_at	A	A1TS	POPTR_0014s03560	POPTR_0014s03560 (11)	scaffold_14:2842039-2842572(-) (11)	NA	NA	NA	AT1G47310.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g56180.1	expressed protein	Medtr1g025140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221154.1.S1_at	A	A1TS	POPTR_0014s03550	POPTR_0014s03550 (11)	scaffold_14:2839669-2840142(+) (11)	NA	Q8H157	Nitrate transporter 1.2	AT1G69850.1	nitrate transporter 1:2 	LOC_Os01g54515.1	"peptide transporter PTR2, putative, expressed"	Medtr3g148710.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.221155.1.S1_at	A	A1TS	POPTR_0014s03540	POPTR_0014s03540 (11)	scaffold_14:2831361-2831811(-) (11)	NA	Q75H81	Serpin-ZXA	AT1G47710.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41419.1	"serpin domain containing protein, putative, expressed"	Medtr3g148650.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221156.1.S1_at	A	A1TS	POPTR_0014s03490	POPTR_0014s03490 (11)	scaffold_14:2804671-2805767(+) (11)	NA	Q9SX99	"Protein OSB1, mitochondrial"	AT1G47720.1	Primosome PriB/single-strand DNA-binding 	LOC_Os01g72049.1	"retrotransposon, putative, centromere-specific, expressed"	Medtr1g025070.1	Single-strand binding protein/Primosomal replication protein n 	NA	GO:0003697|single-stranded DNA binding	NA
PtpAffx.221157.1.S1_at	A	A1TS	POPTR_0014s03480	POPTR_0014s03480 (11)	scaffold_14:2793991-2795717(-) (11)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT5G66850.1	mitogen-activated protein kinase kinase kinase 5 	LOC_Os03g55560.2	"STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g148390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221158.1.S1_at	A	A1TS	POPTR_0014s03470	POPTR_0014s03470 (11)	scaffold_14:2788750-2789068(-) (11)	NA	NA	NA	AT2G26520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g148340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221159.1.S1_at	A	A1TS	POPTR_0014s03450	POPTR_0014s03450 (11)	scaffold_14:2781835-2782003(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221160.1.S1_at	A	A1TS	POPTR_0014s03400	POPTR_0014s03400 (11)	scaffold_14:2731149-2734052(+) (11)	NA	O48721	"Uroporphyrinogen-III synthase, chloroplastic"	AT2G26540.1	uroporphyrinogen-III synthase family protein 	LOC_Os03g08730.1	"uroporphyrinogen III synthase, putative, expressed"	Medtr3g148200.1	Uroporphyrinogen III synthase HEM4 	GO:0033014|tetrapyrrole biosynthetic process	GO:0004852|uroporphyrinogen-III synthase activity	NA
PtpAffx.221161.1.S1_at	A	A1TS	POPTR_0014s03370	POPTR_0014s03370 (11)	scaffold_14:2704532-2706542(-) (11)	NA	NA	NA	AT4G11800.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os07g01540.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	AC235663_25.1	"protein serine/threonine phosphatase, putative AC235663.1 114531-114698 E EGN_Mt090430 200"	NA	GO:0016787|hydrolase activity	NA
PtpAffx.221162.1.S1_at	A	A1TS	POPTR_0014s03360	POPTR_0014s03360 (11)	scaffold_14:2698733-2699189(+) (11)	NA	NA	NA	AT2G15730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr3g148170.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221163.1.S1_at	A	A1TS	POPTR_0014s03340	POPTR_0014s03340 (11)	scaffold_14:2688787-2689225(+) (11)	NA	Q2TBM9	Protein SERAC1	AT4G34310.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g08700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221164.1.S1_at	A	A1TS	POPTR_0014s03340	POPTR_0014s03340 (11)	scaffold_14:2684997-2685650(+) (11)	NA	Q2TBM9	Protein SERAC1	AT4G34310.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g08700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221165.1.S1_at	A	A1TS	POPTR_0014s03310	POPTR_0014s03310 (11)	scaffold_14:2658038-2658774(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221167.1.S1_at	A	A1TS	POPTR_0014s03170	POPTR_0014s03170 (11)	scaffold_14:2555341-2555774(+) (11)	NA	Q91ZF0	DnaJ homolog subfamily C member 24	AT4G10130.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os09g28590.2	"AGAP010609-PA, putative, expressed"	Medtr4g101390.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.221169.1.S1_at	A	A1TS	POPTR_0014s03120	POPTR_0014s03120 (10)	scaffold_14:2527758-2528197(-) (10)//scaffold_14:2533401-2533485(-) (9)	NA	Q9FMZ4	B3 domain-containing protein At5g42700	AT5G42700.1	AP2/B3-like transcriptional factor family protein 	LOC_Os06g09420.1	"B3 DNA binding domain containing protein, expressed"	Medtr3g147970.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.221171.1.S1_at	A	A1TS	POPTR_0014s03100	POPTR_0014s03100 (9)	scaffold_14:2512535-2512801(-) (9)	NA	NA	NA	AT5G42750.1	BRI1 kinase inhibitor 1 	LOC_Os09g28550.1	hypothetical protein	Medtr1g024750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221172.1.S1_at	A	A1TS	POPTR_0014s03090	POPTR_0014s03090 (11)	scaffold_14:2498057-2499077(-) (11)	NA	Q92539	Phosphatidate phosphatase LPIN2	AT5G42870.1	phosphatidic acid phosphohydrolase 2 	LOC_Os11g40080.1	"lipin, N-terminal conserved region family protein, expressed"	Medtr1g024730.1	"Lipin, N-terminal conserved region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221173.1.S1_at	A	A1TS	POPTR_0014s03050	POPTR_0014s03050 (10)	scaffold_14:2484649-2484814(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221175.1.S1_at	A	A1MS	POPTR_0014s03030	POPTR_0014s03030 (11)	scaffold_14:2475033-2475297(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221176.1.S1_at	A	A1TS	POPTR_0014s03030	POPTR_0014s03030 (11)	scaffold_14:2474604-2474850(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221177.1.S1_at	A	A1MS	POPTR_0014s03030	POPTR_0014s03030 (11)	scaffold_14:2474053-2474417(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221178.1.S1_at	A	A1TS	POPTR_0014s03000	POPTR_0014s03000 (10)	scaffold_14:2461205-2461704(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221179.1.S1_at	A	A1TS	POPTR_0014s02950	POPTR_0014s02950 (11)	scaffold_14:2426562-2426666(+) (11)	NA	P40781	Protein CYPRO4	AT4G33400.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g54780.1	"CYPRO4, putative, expressed"	Medtr3g147800.1	AMP-dependent synthetase and ligase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221179.1.S1_s_at	A	A1TS	POPTR_0014s02950	POPTR_0014s02950 (11)	scaffold_14:2426342-2426620(+) (11)	NA	P40781	Protein CYPRO4	AT4G33400.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g54780.1	"CYPRO4, putative, expressed"	Medtr3g147800.1	AMP-dependent synthetase and ligase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221180.1.S1_at	A	A1TS	POPTR_0014s02890	POPTR_0014s02890 (11)	scaffold_14:2380983-2381105(+) (11)	NA	Q9NBK5	Serine/threonine-protein kinase tricorner	AT5G09890.1	Protein kinase family protein 	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g024310.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221181.1.S1_at	A	A1TS	POPTR_0014s02880	POPTR_0014s02880 (11)	scaffold_14:2371613-2372202(+) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os06g06130.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.221182.1.S1_at	A	A1TS	POPTR_0014s02870	POPTR_0014s02870 (10)	scaffold_14:2366820-2367116(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221183.1.S1_at	A	A1TS	POPTR_0014s02860	POPTR_0014s02860 (11)	scaffold_14:2363514-2364098(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221184.1.S1_at	A	A1TS	POPTR_0014s02840	POPTR_0014s02840 (11)	scaffold_14:2358612-2359214(+) (11)	NA	Q9LFN5	Glutamate receptor 2.5	AT2G29120.1	glutamate receptor 2.7 	LOC_Os06g06130.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.221185.1.S1_at	A	A1TS	POPTR_0014s02830	POPTR_0014s02830 (11)	scaffold_14:2350672-2351017(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221186.1.S1_at	A	A1TS	POPTR_0014s02790	POPTR_0014s02790 (10)	scaffold_14:2321414-2322704(-) (10)	NA	P85107	Trimethylguanosine synthase	AT1G45231.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g27930.1	"RNA cap guanine-N2 methyltransferase domain containing protein, expressed"	Medtr1g024270.1	WW/Rsp5/WWP 	GO:0009452|RNA capping||GO:0044281|small molecule metabolic process||GO:0044260|cellular macromolecule metabolic process||GO:0001510|RNA methylation	GO:0008168|methyltransferase activity	NA
PtpAffx.221187.1.S1_at	A	A1TS	POPTR_0014s02730	POPTR_0014s02730 (11)	scaffold_14:2274083-2274482(+) (11)//scaffold_14:2291860-2292259(+) (9)//scaffold_14:2300192-2300591(+) (9)	NA	NA	NA	AT5G42930.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr5g017200.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.221188.1.S1_at	A	A1TS	POPTR_0014s02720	POPTR_0014s02720 (11)	scaffold_14:2260576-2261113(+) (11)	NA	Q9FHA7	Transcription factor HEC1	AT5G67060.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g36740.1	"bHelix-loop-helix transcription factor, putative"	Medtr3g147680.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.221189.1.S1_at	A	A1TS	POPTR_0014s02670	POPTR_0014s02670 (11)	scaffold_14:2218753-2219004(-) (11)	NA	NA	NA	AT5G67070.1	ralf-like 34 	NA	NA	Medtr5g017130.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221190.1.S1_at	A	A1TS	POPTR_0014s02640	POPTR_0014s02640 (11)	scaffold_14:2195758-2196248(-) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os04g35140.1	"OsSub41 - Putative Subtilisin homologue, expressed"	Medtr7g089060.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.221191.1.S1_at	A	A1TS	POPTR_0014s02610	POPTR_0014s02610 (11)	scaffold_14:2172253-2173163(+) (11)	NA	Q3EDL4	Probable serine/threonine-protein kinase At1g01540	AT4G02630.1	Protein kinase superfamily protein 	LOC_Os05g36050.1	"serine/threonine-protein kinase, putative, expressed"	Medtr5g017030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221192.1.S1_at	A	A1TS	POPTR_0014s02600	POPTR_0014s02600 (11)	scaffold_14:2165917-2167771(+) (11)	NA	Q9FXA3	Transcription factor bHLH95	AT1G49770.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g35010.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr4g130160.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.221194.1.S1_at	A	A1TS	POPTR_0014s02570	POPTR_0014s02570 (11)	scaffold_14:2145000-2145321(+) (11)	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G42830.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g01350.1	"transferase family protein, putative, expressed"	Medtr3g147460.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.221194.1.S1_x_at	A	A1TS	POPTR_0014s02570	POPTR_0014s02570 (11)	scaffold_14:2145000-2145315(+) (11)	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G42830.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g01350.1	"transferase family protein, putative, expressed"	Medtr3g147460.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.221195.1.S1_at	A	A1TS	POPTR_0014s02520	POPTR_0014s02520 (11)	scaffold_14:2090744-2091070(+) (11)	NA	NA	NA	AT5G52010.1	C2H2-like zinc finger protein 	LOC_Os06g07020.1	"ZOS6-01 - C2H2 zinc finger protein, expressed"	Medtr1g019990.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.221196.1.S1_at	A	A1TS	POPTR_0014s02510	POPTR_0014s02510 (11)	scaffold_14:2085079-2085632(-) (11)	NA	NA	NA	AT4G06536.1	SPla/RYanodine receptor (SPRY) domain-containing protein 	LOC_Os02g40110.1	expressed protein	Medtr3g147400.1	SPla/RYanodine receptor SPRY 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221198.1.S1_at	A	A1TS	POPTR_0014s02440	POPTR_0014s02440 (11)	scaffold_14:2048275-2048484(+) (11)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G43020.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.221199.1.S1_at	A	A1TS	POPTR_0014s02430	POPTR_0014s02430 (11)	scaffold_14:2034193-2034697(+) (11)	NA	Q8W3M4	Uncharacterized protein At4g06744	AT4G06744.1	Leucine-rich repeat (LRR) family protein 	LOC_Os04g57430.1	"uncharacterized protein At4g06744 precursor, putative"	Medtr1g023960.1	"Uncharacterized protein At4g06744 precursor, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.2212.1.A1_at	A	A2TS	POPTR_0019s03730	POPTR_0019s03730 (10)//POPTR_0019s03740 (10)	scaffold_19:3830325-3830358(-) (10)//scaffold_19:3837055-3837088(-) (10)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.2212.1.A1_s_at	A	A2TS	POPTR_0019s03730	POPTR_0019s03730 (11)//POPTR_0019s03740 (11)	scaffold_19:3829946-3830307(-) (11)//scaffold_19:3836676-3837037(-) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.221200.1.S1_at	A	A1TS	POPTR_0014s02400	POPTR_0014s02400 (11)	scaffold_14:2004463-2005301(+) (11)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT1G60060.1	Serine/threonine-protein kinase WNK (With No Lysine)-related 	LOC_Os06g12740.1	expressed protein	Medtr1g023870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221202.1.S1_at	A	A1TA	POPTR_0014s02340	POPTR_0014s02340 (11)	scaffold_14:1980815-1980981(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221203.1.S1_at	A	A1MS	POPTR_0014s02280	POPTR_0014s02280 (11)	scaffold_14:1936802-1937769(+) (11)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os03g64030.1	"receptor protein kinase, putative, expressed"	Medtr1g023770.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221204.1.S1_at	A	A1TS	POPTR_0014s02250	POPTR_0014s02250 (11)	scaffold_14:1909365-1912312(+) (11)	NA	Q6BT38	Chromatin modification-related protein EAF3	AT4G37280.1	MRG family protein 	LOC_Os11g34300.2	"chromatin modification-related protein EAF3, putative, expressed"	NA	NA	NA	NA	GO:0005634|nucleus
PtpAffx.221205.1.S1_at	A	A1TS	POPTR_0014s02240	POPTR_0014s02240 (11)	scaffold_14:1904615-1904863(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221206.1.S1_at	A	A1TS	POPTR_0014s02230	POPTR_0014s02230 (11)	scaffold_14:1902416-1902676(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221207.1.S1_at	A	A1TS	POPTR_0014s02190	POPTR_0014s02190 (11)	scaffold_14:1876118-1876645(+) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37360.1	"cytochrome P450, family 81, subfamily D, polypeptide 2 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.221208.1.S1_at	A	A1TS	POPTR_0014s02140	POPTR_0014s02140 (11)	scaffold_14:1847141-1847836(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221209.1.S1_at	A	A1TS	POPTR_0014s02130	POPTR_0014s02130 (11)	scaffold_14:1844090-1844464(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221212.1.S1_at	A	A1TS	POPTR_0014s02100	POPTR_0014s02100 (11)	scaffold_14:1829244-1829693(-) (11)	NA	NA	NA	AT2G38185.2	RING/U-box superfamily protein 	LOC_Os06g14200.1	"zinc finger, C3HC4 type domain containing protein"	Medtr1g023680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221213.1.S1_at	A	A1TS	POPTR_0014s02090	POPTR_0014s02090 (11)	scaffold_14:1826997-1827317(-) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37340.1	"cytochrome P450, family 81, subfamily D, polypeptide 3 "	LOC_Os02g30100.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221214.1.S1_s_at	A	A1TS	POPTR_0014s02100	POPTR_0014s02100 (11)	scaffold_14:1828937-1829256(-) (11)	NA	NA	NA	AT2G38185.2	RING/U-box superfamily protein 	LOC_Os06g14200.1	"zinc finger, C3HC4 type domain containing protein"	Medtr1g023680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221215.1.S1_at	A	A1MS	POPTR_0014s02090	POPTR_0014s02090 (11)	scaffold_14:1827564-1827629(-) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37340.1	"cytochrome P450, family 81, subfamily D, polypeptide 3 "	LOC_Os02g30100.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221215.1.S1_s_at	A	A1TS	POPTR_0014s02090	POPTR_0014s02090 (11)	scaffold_14:1827619-1827758(-) (11)	POPTR_0002s12230 (6)	P93147	Isoflavone 2'-hydroxylase	AT4G37340.1	"cytochrome P450, family 81, subfamily D, polypeptide 3 "	LOC_Os02g30100.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221216.1.S1_at	A	A1TS	POPTR_0014s02050	POPTR_0014s02050 (11)	scaffold_14:1797945-1800653(-) (11)	NA	Q9LVC3	Pumilio homolog 12	AT5G56510.1	pumilio 12 	LOC_Os11g37090.1	"pumilio-family RNA binding repeat domain containing protein, expressed"	AC235748_25.1	Pumilio/Puf RNA-binding AC235748.1 92544-87886 E EGN_Mt090430 200	NA	GO:0003723|RNA binding	NA
PtpAffx.221217.1.S1_at	A	A1TS	POPTR_0014s02040	POPTR_0014s02040 (11)	scaffold_14:1789119-1791682(-) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G43100.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g40260.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr5g016240.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221218.1.S1_at	A	A1TS	POPTR_0014s02020	POPTR_0014s02020 (11)	scaffold_14:1780522-1780725(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221220.1.S1_at	A	A1TS	POPTR_0014s01990	POPTR_0014s01990 (11)	scaffold_14:1766938-1768103(-) (11)	NA	NA	NA	AT5G43120.1	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein 	NA	NA	AC232874_13.1	Tetratricopeptide-like helical AC232874.1 44658-42406 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221223.1.S1_at	A	A1MS	POPTR_0014s01830	POPTR_0014s01830 (10)	scaffold_14:1689641-1690539(-) (10)	NA	NA	NA	AT5G43130.1	TBP-associated factor 4 	LOC_Os03g32590.1	"transcription initiation factor, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006352|transcription initiation||GO:0006461|protein complex assembly	GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
PtpAffx.221228.1.S1_s_at	A	A1TS	POPTR_0003s00530	POPTR_0003s00530 (11)	scaffold_22:569237-569461(-) (11)//scaffold_3:411764-411988(-) (11)//scaffold_3:510212-510436(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.221230.1.S1_at	A	A1TS	POPTR_0001s01790	POPTR_0001s01790 (11)	scaffold_1:1307893-1309388(-) (11)	NA	Q9UT88	Probable phosphomevalonate kinase	AT1G31910.1	GHMP kinase family protein 	LOC_Os03g14830.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr3g124290.1	Phosphomevalonate kinase Erg8; GHMP kinase; ; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.221232.1.S1_at	A	A1TS	POPTR_0021s00530	POPTR_0021s00530 (11)	scaffold_21:238206-239161(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.221240.1.S1_x_at	A	A1MS	POPTR_2452s00010	POPTR_2452s00010 (11)	scaffold_2452:2275-2602(+) (11)//scaffold_37:26318-26646(-) (11)	POPTR_0017s10116 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221246.1.S1_s_at	A	A1TS	POPTR_0005s01580	POPTR_0005s01580 (11)	scaffold_5:1034341-1036278(+) (11)	NA	Q3E9D3	Probable pectinesterase 55	AT5G18990.1	Pectin lyase-like superfamily protein 	LOC_Os01g19440.1	"pectinesterase, putative"	AC146557_2.1	Pectinesterase AC146557.33 4034-7009 H EGN_Mt090430 200	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.221247.1.S1_s_at	A	A2TS	POPTR_0008s19130	POPTR_0008s19130 (11)//POPTR_0307s00210 (11)	scaffold_307:10619-10761(-) (11)//scaffold_8:13107462-13107604(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G26590.1	MATE efflux family protein 	LOC_Os08g43654.1	"MATE efflux family protein, putative, expressed"	Medtr5g034470.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.221248.1.S1_at	A	A1TS	POPTR_0598s00200	POPTR_0598s00200 (10)	scaffold_598:10503-11475(+) (10)	POPTR_0012s08590 (6)	NA	NA	AT4G24810.3	Protein kinase superfamily protein 	LOC_Os01g67720.1	"ABC1 family domain containing protein, putative, expressed"	Medtr8g109920.1	"Cytochrome c, monohaem; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22125.1.A1_a_at	A	A1TS	POPTR_0001s13280	POPTR_0001s13280 (9)	scaffold_1:10364659-10366252(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221250.1.S1_s_at	A	A3TS	POPTR_0013s03100	POPTR_0013s03120 (11)//POPTR_0013s03100 (11)//POPTR_1333s00200 (11)	scaffold_13:1889006-1889431(-) (11)//scaffold_13:1899596-1900021(-) (11)//scaffold_1333:4767-5196(+) (11)	NA	C0LGD6	Probable LRR receptor-like serine/threonine-protein kinase At1g05700	AT1G05700.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44990.1	"light repressible receptor protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.221251.1.S1_at	A	A1TS	POPTR_0015s15460	POPTR_0015s15460 (11)	scaffold_15:14723519-14723557(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221253.1.S1_at	A	A1TS	POPTR_0015s15400	POPTR_0015s15400 (9)	scaffold_15:14700101-14700152(-) (11)	NA	O48651	Squalene monooxygenase	AT4G37760.1	squalene epoxidase 3 	LOC_Os03g12910.2	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221254.1.S1_s_at	A	A2TS	POPTR_0018s14500	POPTR_0018s14500 (11)//POPTR_0126s00200 (10)	scaffold_126:1467-1883(-) (10)//scaffold_18:14684489-14684922(-) (11)	POPTR_0126s00230 (8)	Q9C9L5	Wall-associated receptor kinase-like 9	AT1G69730.1	Wall-associated kinase family protein 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	AC147501_3.1	Tyrosine protein kinase AC147501.9 8841-5950 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221256.1.S1_at	A	A1TS	POPTR_0007s03470	POPTR_0007s03470 (9)	scaffold_7:1975885-1975917(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221258.1.S1_s_at	A	A2TS	POPTR_0006s01480	POPTR_0006s01480 (11)//POPTR_0006s01460 (10)	scaffold_6:871267-871878(-) (10)//scaffold_6:884745-885356(-) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221259.1.S1_at	A	A1TS	POPTR_0013s12470	POPTR_0013s12470 (11)	scaffold_13:13131976-13134127(-) (11)	NA	Q923G2	"DNA-directed RNA polymerases I, II, and III subunit RPABC3"	AT3G59600.1	RNA polymerase Rpb8 	LOC_Os06g48230.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed"	Medtr8g147760.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
PtpAffx.221261.1.S1_s_at	A	A3TS	POPTR_0013s12420	POPTR_0013s12830 (11)//POPTR_0013s12430 (11)//POPTR_0013s12420 (11)	scaffold_13:13089250-13089643(-) (11)//scaffold_13:13103575-13103968(-) (11)//scaffold_13:13476698-13477091(+) (11)	NA	Q6TN15	Interferon-induced GTP-binding protein Mx	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.221264.1.S1_s_at	A	A1TS	POPTR_0013s12400	POPTR_0013s12400 (11)	scaffold_13:13038982-13039307(+) (11)	NA	NA	NA	AT3G58110.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1). 	LOC_Os06g34710.1	expressed protein	AC233675_21.1	hypothetical protein AC233675.1 101243-98727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221265.1.S1_at	A	A1TS	POPTR_0013s12350	POPTR_0013s12350 (11)	scaffold_13:12974299-12974671(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221266.1.S1_at	A	A1TS	POPTR_0013s12340	POPTR_0013s12340 (11)	scaffold_13:12951536-12951752(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221267.1.S1_at	A	A1TS	POPTR_0013s12330	POPTR_0013s12330 (11)	scaffold_13:12948965-12950676(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221268.1.S1_at	A	A1TS	POPTR_0013s12300	POPTR_0013s12300 (11)	scaffold_13:12894393-12895239(+) (11)	NA	Q39846	Seed biotin-containing protein SBP65	AT2G42560.1	late embryogenesis abundant domain-containing protein / LEA domain-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221271.1.S1_at	A	A1TS	POPTR_0013s12250	POPTR_0013s12250 (11)	scaffold_13:12859863-12860237(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221272.1.S1_at	A	A1TS	POPTR_0013s12230	POPTR_0013s12230 (11)	scaffold_13:12858743-12859421(+) (11)	NA	NA	NA	AT2G31130.1	unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). 	NA	NA	Medtr4g109560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221274.1.S1_at	A	A1TS	POPTR_0013s12200	POPTR_0013s12200 (11)	scaffold_13:12842205-12842836(-) (11)	NA	Q9MAH4	ABC transporter G family member 10	AT1G53270.1	ABC-2 type transporter family protein 	LOC_Os01g42900.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr4g142950.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.221275.1.S1_at	A	A1MS	POPTR_0013s12180	POPTR_0013s12180 (10)	scaffold_13:12822055-12823561(-) (10)	NA	Q05758	"Ketol-acid reductoisomerase, chloroplastic"	AT3G58610.3	ketol-acid reductoisomerase 	LOC_Os01g46380.1	"ketol-acid reductoisomerase, chloroplast precursor, putative, expressed"	Medtr4g109610.1	Acetohydroxy acid isomeroreductase; ; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009082|branched chain family amino acid biosynthetic process	GO:0004455|ketol-acid reductoisomerase activity	NA
PtpAffx.221277.1.S1_at	A	A1TS	POPTR_0013s12150	POPTR_0013s12150 (11)	scaffold_13:12787994-12788033(-) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT1G71830.1	somatic embryogenesis receptor-like kinase 1 	LOC_Os08g07760.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g008520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.221277.1.S1_s_at	A	A1TS	POPTR_0013s12150	POPTR_0013s12150 (11)	scaffold_13:12788042-12788452(-) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT1G71830.1	somatic embryogenesis receptor-like kinase 1 	LOC_Os08g07760.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g008520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.221278.1.S1_at	A	A1TS	POPTR_0013s12100	POPTR_0013s12100 (11)	scaffold_13:12757994-12758583(+) (11)	NA	NA	NA	AT2G44020.1	Mitochondrial transcription termination factor family protein 	LOC_Os02g54200.2	"mitochondrial transcription termination factor family protein, putative, expressed"	Medtr5g077520.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221279.1.S1_at	A	A1TS	POPTR_0013s12090	POPTR_0013s12090 (11)	scaffold_13:12751798-12752426(-) (11)	NA	Q8LC53	Protein EPIDERMAL PATTERNING FACTOR 2	AT1G34245.1	Putative membrane lipoprotein 	LOC_Os04g54490.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221280.1.S1_at	A	A1TS	POPTR_0013s12080	POPTR_0013s12080 (10)	scaffold_13:12746780-12747239(+) (11)	NA	Q652P9	Germin-like protein 9-3	AT3G62020.2	germin-like protein 10 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107640.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.221281.1.S1_at	A	A1TS	POPTR_0013s12060	POPTR_0013s12060 (11)	scaffold_13:12726410-12726869(-) (11)	NA	NA	NA	AT3G02430.1	Protein of unknown function (DUF679) 	LOC_Os01g65992.1	expressed protein	Medtr2g018050.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221282.1.S1_at	A	A1TS	POPTR_0013s12030	POPTR_0013s12030 (11)	scaffold_13:12707545-12708008(-) (11)	NA	Q7T037	E3 ubiquitin-protein ligase RNF12-B	AT4G32600.1	RING/U-box superfamily protein 	LOC_Os12g04460.1	"zinc finger, C3HC4 type domain containing protein"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221283.1.S1_at	A	A1TS	POPTR_0013s11990	POPTR_0013s11990 (11)	scaffold_13:12662480-12663619(-) (11)	NA	A4IIS8	Multidrug and toxin extrusion protein 1	AT1G71870.1	MATE efflux family protein 	LOC_Os03g62270.1	"MATE efflux family protein, putative, expressed"	Medtr5g076410.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.221284.1.S1_at	A	A1TS	POPTR_0013s11980	POPTR_0013s11980 (11)	scaffold_13:12638993-12639370(+) (11)	NA	NA	NA	AT1G71850.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os03g44430.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr4g069870.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221285.1.S1_at	A	A1TS	POPTR_0013s11960	POPTR_0013s11960 (11)	scaffold_13:12610302-12611491(-) (11)	NA	NA	NA	AT1G34320.1	Protein of unknown function (DUF668) 	LOC_Os01g65330.1	expressed protein	Medtr4g144270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221286.1.S1_at	A	A1TS	POPTR_0013s11910	POPTR_0013s11910 (11)	scaffold_13:12533173-12533628(-) (11)	NA	NA	NA	AT1G34355.1	forkhead-associated (FHA) domain-containing protein  	LOC_Os11g07050.1	"FHA domain containing protein, putative, expressed"	Medtr1g122320.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221287.1.S1_at	A	A1TS	POPTR_0013s11880	POPTR_0013s11880 (11)	scaffold_13:12506431-12508004(+) (11)	NA	O67550	5'-3' exonuclease	AT1G34380.2	5'-3' exonuclease family protein 	LOC_Os01g65400.2	"DNA polymerase I, putative, expressed"	NA	NA	NA	GO:0008409|5'-3' exonuclease activity||GO:0003677|DNA binding	NA
PtpAffx.221288.1.S1_s_at	A	A1TS	POPTR_0013s11870	POPTR_0013s11870 (11)	scaffold_13:12494030-12494740(-) (11)	NA	O66119	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AT1G34430.1	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os12g08170.1	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	AC233660_8.1	Biotin/lipoyl attachment; Dihydrolipoamide succinyltransferase AC233660.2 38835-37267 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.221289.1.S1_at	A	A1TS	POPTR_0013s11840	POPTR_0013s11840 (11)	scaffold_13:12472299-12472767(-) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT1G71900.1	Protein of unknown function (DUF803) 	LOC_Os05g35060.1	"DUF803 domain containing, putative, expressed"	Medtr2g005850.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221289.1.S1_s_at	A	A1TS	POPTR_0013s11840	POPTR_0013s11840 (11)	scaffold_13:12473058-12473354(-) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT1G71900.1	Protein of unknown function (DUF803) 	LOC_Os05g35060.1	"DUF803 domain containing, putative, expressed"	Medtr2g005850.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221290.1.S1_at	A	A1TS	POPTR_0013s11830	POPTR_0013s11830 (11)	scaffold_13:12468972-12469490(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221291.1.S1_at	A	A1TS	POPTR_0013s11810	POPTR_0013s11810 (11)	scaffold_13:12454364-12454885(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221292.1.S1_at	A	A1TS	POPTR_0013s11800	POPTR_0013s11800 (11)	scaffold_13:12450605-12451147(+) (11)	NA	NA	NA	AT1G34550.1	Protein of unknown function (DUF616) 	LOC_Os11g09170.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	AC146568_8.1	Protein of unknown function DUF616 AC146568.11 42302-43568 E EGN_Mt090430 200	NA	GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.221294.1.S1_at	A	A1TS	POPTR_0013s11780	POPTR_0013s11780 (11)	scaffold_13:12429218-12430446(-) (11)	NA	NA	NA	AT4G09620.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g62240.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221295.1.S1_at	A	A1MS	POPTR_0013s11750	POPTR_0013s11750 (9)	scaffold_13:12419315-12421277(-) (9)	NA	NA	NA	AT1G65280.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g33800.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221296.1.S1_at	A	A1TS	POPTR_0013s11740	POPTR_0013s11740 (11)	scaffold_13:12403032-12403990(-) (11)	NA	Q9FWX2	NAC domain-containing protein 7	AT1G71930.1	vascular related NAC-domain protein 7 	LOC_Os03g03540.1	"no apical meristem protein, putative, expressed"	Medtr5g021640.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.221300.1.S1_s_at	A	A2TS	POPTR_0013s11690	POPTR_0013s11690 (11)//POPTR_0019s11290 (11)	scaffold_13:12354601-12356368(-) (11)//scaffold_19:12632454-12633483(-) (11)	NA	Q38869	Calcium-dependent protein kinase 4	AT1G35670.1	calcium-dependent protein kinase 2 	LOC_Os12g07230.1	"CAMK_CAMK_like.45 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g144630.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221302.1.S1_at	A	A1TS	POPTR_0013s11660	POPTR_0013s11660 (11)	scaffold_13:12332652-12333240(+) (11)	NA	O94264	Uncharacterized RING finger protein P8B7.15c	AT5G47430.3	"DWNN domain, a CCHC-type zinc finger "	LOC_Os10g29560.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g105530.1	"DNA-binding protein-like, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221303.1.S1_at	A	A1TS	POPTR_0013s11650	POPTR_0013s11650 (11)	scaffold_13:12301565-12302008(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140430.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.221304.1.S1_at	A	A1TS	POPTR_0013s11640	POPTR_0013s11640 (11)	scaffold_13:12295410-12295899(+) (11)	NA	Q84TH5	ABC transporter G family member 25	AT1G71960.1	ATP-binding casette family G25 	LOC_Os11g07600.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	NA	GO:0016020|membrane
PtpAffx.221305.1.S1_at	A	A1TS	POPTR_0013s11620	POPTR_0013s11620 (11)	scaffold_13:12276146-12277533(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221307.1.S1_at	A	A1TS	POPTR_0013s11550	POPTR_0013s11550 (11)	scaffold_13:12189599-12189733(-) (11)	NA	P33082	Auxin-induced protein X15	AT4G09530.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g090130.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221308.1.S1_at	A	A1TS	POPTR_0013s11520	POPTR_0013s11520 (11)	scaffold_13:12133109-12134351(-) (11)	NA	NA	NA	AT4G09510.1	cytosolic invertase 2 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221309.1.S1_at	A	A1TS	POPTR_0013s11490	POPTR_0013s11490 (11)	scaffold_13:12112537-12112860(+) (11)	NA	NA	NA	AT3G21630.1	chitin elicitor receptor kinase 1 	NA	NA	Medtr5g093450.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221310.1.S1_s_at	A	A2TS	POPTR_0015s00350	POPTR_0015s00350 (11)//POPTR_0015s00360 (11)	scaffold_15:170793-170935(+) (11)//scaffold_15:182316-182458(+) (11)//scaffold_15:202310-202452(-) (11)	NA	NA	NA	AT5G24600.1	"Protein of unknown function, DUF599 "	LOC_Os02g19060.1	expressed protein	Medtr5g077330.1	Protein of unknown function DUF599 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221311.1.S1_x_at	A	A2MS	POPTR_0013s11390	POPTR_0013s11390 (10)//POPTR_0013s11450 (10)	scaffold_13:12074099-12074445(-) (10)//scaffold_13:12099916-12100262(-) (10)	NA	Q8BGE5	Fanconi anemia group M protein homolog	AT1G35530.2	DEAD/DEAH box RNA helicase family protein  	LOC_Os11g07870.1	"DEAD/DEAH box helicase domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.221313.1.S1_s_at	A	A1TS	POPTR_0013s11440	POPTR_0013s11440 (11)	scaffold_13:12085565-12093940(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221314.1.S1_x_at	A	A1TS	POPTR_0013s11450	POPTR_0013s11450 (9)	scaffold_13:12099919-12100250(-) (11)	NA	Q8BGE5	Fanconi anemia group M protein homolog	AT1G35530.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os11g07870.1	"DEAD/DEAH box helicase domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.221315.1.S1_at	A	A1TS	POPTR_0013s11390	POPTR_0013s11390 (11)	scaffold_13:12071210-12073119(-) (11)	NA	Q8BGE5	Fanconi anemia group M protein homolog	AT1G35530.2	DEAD/DEAH box RNA helicase family protein  	LOC_Os11g07870.1	"DEAD/DEAH box helicase domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.221316.1.S1_at	A	A1TS	POPTR_0013s11350	POPTR_0013s11350 (11)	scaffold_13:12001177-12001582(+) (11)	NA	NA	NA	AT1G14060.1	GCK domain-containing protein 	LOC_Os07g06460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221317.1.S1_x_at	A	A1TS	POPTR_0013s11310	POPTR_0013s11310 (11)	scaffold_13:11968441-11968764(+) (11)	NA	NA	NA	AT3G20230.1	Ribosomal L18p/L5e family protein 	LOC_Os02g46440.4	expressed protein	Medtr4g033440.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221318.1.S1_at	A	A1TS	POPTR_0013s11300	POPTR_0013s11300 (11)	scaffold_13:11958271-11958713(+) (11)	NA	Q8VHT7	Transcription factor IIIA	AT1G72050.2	transcription factor IIIA 	LOC_Os05g03020.1	"ZOS5-03 - C2H2 zinc finger protein, expressed"	Medtr3g005750.1	"Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.221318.1.S1_x_at	A	A1TS	POPTR_0013s11300	POPTR_0013s11300 (11)	scaffold_13:11958271-11959182(+) (11)	NA	Q8VHT7	Transcription factor IIIA	AT1G72050.2	transcription factor IIIA 	LOC_Os05g03020.1	"ZOS5-03 - C2H2 zinc finger protein, expressed"	Medtr3g005750.1	"Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.221319.1.S1_at	A	A1TS	POPTR_0013s11290	POPTR_0013s11290 (11)	scaffold_13:11954309-11954568(-) (11)	NA	Q9ZVX1	Probable ubiquitin-conjugating enzyme E2 23	AT2G16920.1	ubiquitin-conjugating enzyme 23 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr2g100190.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.22132.1.S1_at	A	A1TS	POPTR_0016s12660	POPTR_0016s12660 (11)	scaffold_16:12033567-12033652(-) (11)	NA	NA	NA	AT5G01360.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18120.1	"proteins of unknown function domain containing protein, expressed"	AC233100_70.1	"Protein of unknown function DUF231, plant AC233100.6 313231-310151 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22132.1.S1_s_at	A	A1TS	POPTR_0016s12660	POPTR_0016s12660 (11)	scaffold_16:12033663-12033898(-) (11)	NA	NA	NA	AT5G01360.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18120.1	"proteins of unknown function domain containing protein, expressed"	AC233100_70.1	"Protein of unknown function DUF231, plant AC233100.6 313231-310151 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221320.1.S1_at	A	A1TS	POPTR_0013s11270	POPTR_0013s11270 (11)	scaffold_13:11937445-11937973(+) (11)	NA	Q9SP55	V-type proton ATPase subunit G	AT4G23710.1	vacuolar ATP synthase subunit G2 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
PtpAffx.221321.1.S1_at	A	A1TS	POPTR_0013s11240	POPTR_0013s11240 (10)	scaffold_13:11915992-11917767(-) (10)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT1G22620.1	Phosphoinositide phosphatase family protein 	LOC_Os08g01750.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221322.1.S1_at	A	A1TS	POPTR_0013s11230	POPTR_0013s11230 (11)	scaffold_13:11901283-11902113(-) (11)	NA	Q6P4Y0	CDK5 regulatory subunit-associated protein 1-like 1	AT1G72090.1	Methylthiotransferase 	LOC_Os04g35480.1	"CDK5RAP1, putative, expressed"	Medtr5g021160.1	Elongator protein 3/MiaB/NifB 	GO:0044260|cellular macromolecule metabolic process||GO:0009451|RNA modification	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0003824|catalytic activity"	NA
PtpAffx.221323.1.S1_at	A	A1TS	POPTR_0013s11210	POPTR_0013s11210 (11)	scaffold_13:11884286-11884727(+) (11)	NA	Q9FJK3	Agamous-like MADS-box protein AGL80	AT1G22590.2	AGAMOUS-like 87 	LOC_Os01g18440.1	OsMADS89 - MADS-box family gene with M-gamma type-box	Medtr3g087250.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.221324.1.S1_at	A	A1TS	POPTR_0013s11200	POPTR_0013s11200 (9)	scaffold_13:11870742-11878327(+) (11)	NA	Q9C8P8	Transcription factor bHLH80	AT1G35460.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g147140.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221326.1.S1_s_at	A	A2TS	POPTR_0013s11180	POPTR_0013s11180 (11)//POPTR_0689s00200 (11)	scaffold_13:11847471-11847663(+) (11)//scaffold_689:592-784(+) (11)	NA	NA	NA	AT3G16510.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr7g099470.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221329.1.S1_s_at	A	A2TS	POPTR_0013s11100	POPTR_0013s11100 (11)//POPTR_0013s11110 (11)	scaffold_13:11782322-11782856(-) (11)//scaffold_13:11795048-11795582(-) (11)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65100.1	"peptide transporter, putative, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.221330.1.S1_at	A	A1TS	POPTR_0013s11080	POPTR_0013s11080 (11)	scaffold_13:11764173-11765280(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.221331.1.S1_at	A	A1TS	POPTR_0013s11000	POPTR_0013s11000 (10)	scaffold_13:11682223-11682849(+) (11)	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.2	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221332.1.S1_at	A	A2TS	POPTR_0013s09945	POPTR_0013s09945 (11)//POPTR_0013s10980 (9)	scaffold_13:9938065-9939184(+) (11)//scaffold_13:11651040-11652153(-) (9)	NA	Q8GX69	Beta-galactosidase 16	AT1G77410.1	beta-galactosidase 16 	LOC_Os05g35360.1	"beta-galactosidase 7 precursor, putative, expressed"	Medtr4g098560.1	"D-galactoside/L-rhamnose binding SUEL lectin; Glycoside hydrolase, family 35 "	NA	GO:0005529|sugar binding	NA
PtpAffx.221333.1.S1_at	A	A2TS	POPTR_0013s09950	POPTR_0013s09950 (11)//POPTR_0013s10970 (11)	scaffold_13:9940609-9941075(-) (11)//scaffold_13:11649008-11649474(+) (11)	NA	Q9ZU27	"Pentatricopeptide repeat-containing protein At1g51965, mitochondrial"	AT1G51965.1	ABA Overly-Sensitive 5 	LOC_Os02g13340.1	expressed protein	Medtr2g130030.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221334.1.S1_at	A	A1TS	POPTR_0013s10010	POPTR_0013s10010 (11)	scaffold_13:9981441-9983177(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221335.1.S1_at	A	A1TS	POPTR_0013s10020	POPTR_0013s10020 (11)	scaffold_13:9984055-9985332(-) (11)	NA	NA	NA	AT1G33980.2	Smg-4/UPF3 family protein 	NA	NA	Medtr3g013020.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221336.1.S1_at	A	A1TS	POPTR_0013s10030	POPTR_0013s10030 (11)	scaffold_13:9987841-9988067(-) (11)	NA	Q641I1	Protein FAM135B	AT1G58350.2	Putative serine esterase  family protein 	LOC_Os12g06800.1	"serine esterase family protein, putative, expressed"	Medtr3g127940.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221338.1.S1_at	A	A1TS	POPTR_0013s10130	POPTR_0013s10130 (11)	scaffold_13:10118477-10118988(-) (11)	NA	Q9FIJ6	Serine/threonine-protein kinase-like protein CCR4	AT5G47850.1	CRINKLY4 related 4 	LOC_Os04g35890.1	"TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr4g041620.1	Tyrosine protein kinase; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221340.1.S1_at	A	A1TS	POPTR_0013s10210	POPTR_0013s10210 (11)	scaffold_13:10226942-10227263(+) (11)	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT1G71691.2	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os08g02094.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g013140.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.221341.1.S1_at	A	A1TS	POPTR_0013s10220	POPTR_0013s10220 (11)	scaffold_13:10229048-10229477(-) (11)	NA	Q8L5Z1	GDSL esterase/lipase At1g33811	AT1G33811.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g52770.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g013150.1	"GDSL-lipase 1, putative "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.221342.1.S1_at	A	A1TS	POPTR_0013s10260	POPTR_0013s10260 (11)	scaffold_13:10268280-10271824(-) (11)	NA	NA	NA	AT4G10000.2	Thioredoxin family protein 	LOC_Os08g44400.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr3g013180.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.221343.1.S1_at	A	A1TS	POPTR_0013s10310	POPTR_0013s10310 (9)	scaffold_13:10335044-10335804(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT2G04050.1	MATE efflux family protein 	LOC_Os05g48040.1	"MATE efflux family protein, putative, expressed"	Medtr7g094030.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221344.1.S1_at	A	A1TS	POPTR_0013s10320	POPTR_0013s10320 (11)	scaffold_13:10340371-10340847(-) (11)	NA	NA	NA	AT3G26050.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os01g66200.1	expressed protein	Medtr5g037670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221345.1.S1_at	A	A1TS	POPTR_0013s10340	POPTR_0013s10340 (11)	scaffold_13:10385207-10385540(-) (11)	NA	Q9C9I2	Ethylene-responsive transcription factor ERF021	AT1G71450.1	Integrase-type DNA-binding superfamily protein 	LOC_Os11g13840.1	"AP2 domain containing protein, expressed"	Medtr5g008620.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.221346.1.S1_at	A	A1TS	POPTR_0013s10390	POPTR_0013s10390 (10)	scaffold_13:10605993-10606899(+) (10)	NA	NA	NA	AT1G71480.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os09g09320.2	"nuclear transport factor, putative, expressed"	Medtr5g010150.1	hypothetical protein 	GO:0006810|transport	NA	GO:0005622|intracellular
PtpAffx.221347.1.S1_at	A	A1TS	POPTR_0013s10430	POPTR_0013s10430 (11)	scaffold_13:10727817-10729434(-) (11)	NA	A4IGM4	Hydroxysteroid 11-beta-dehydrogenase 1-like protein	AT4G10020.1	hydroxysteroid dehydrogenase 5 	LOC_Os03g62590.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.221348.1.S1_at	A	A1TS	POPTR_0013s10440	POPTR_0013s10440 (11)	scaffold_13:10740388-10741037(+) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G71530.1	Protein kinase superfamily protein 	LOC_Os08g02050.1	"protein kinase family protein, putative, expressed"	Medtr5g008910.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221349.1.S1_at	A	A1TS	POPTR_0013s10480	POPTR_0013s10480 (10)	scaffold_13:10766824-10767089(-) (10)	NA	Q3U0V1	Far upstream element-binding protein 2	AT4G10070.1	KH domain-containing protein 	LOC_Os08g01930.1	"KH domain-containing protein, putative, expressed"	Medtr5g008480.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.221350.1.S1_at	A	A1MS	POPTR_0013s10480	POPTR_0013s10480 (11)	scaffold_13:10769646-10771408(-) (11)	NA	Q3U0V1	Far upstream element-binding protein 2	AT4G10070.1	KH domain-containing protein 	LOC_Os08g01930.1	"KH domain-containing protein, putative, expressed"	Medtr5g008480.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.221353.1.S1_at	A	A1TS	POPTR_0013s10540	POPTR_0013s10540 (11)	scaffold_13:10883922-10884408(+) (11)	NA	Q8RX37	Probable protein phosphatase 2C 2	AT1G07160.1	Protein phosphatase 2C family protein 	LOC_Os12g09640.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221354.1.S1_at	A	A1TS	POPTR_0013s10600	POPTR_0013s10600 (11)	scaffold_13:10948746-10949124(+) (11)	NA	Q9C9H9	Pentatricopeptide repeat-containing protein At1g71420	AT1G71420.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g41040.1	"pentatricopeptide, putative, expressed"	Medtr5g008330.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221355.1.S1_at	A	A1TS	POPTR_0013s10610	POPTR_0013s10610 (11)	scaffold_13:10972790-10973076(+) (11)	NA	Q8CFE4	SCY1-like protein 2	AT1G22870.1	Protein kinase family protein with ARM repeat domain 	LOC_Os01g42950.1	"protein kinase family protein, putative, expressed"	Medtr4g032040.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221358.1.S1_at	A	A1MS	POPTR_0013s10650	POPTR_0013s10650 (11)	scaffold_13:10998737-10999431(-) (11)	NA	O48540	"Mannan endo-1,4-beta-mannosidase 1"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr4g118250.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221359.1.S1_s_at	A	A1TS	POPTR_0017s02610	POPTR_0017s02610 (11)	scaffold_17:1883894-1884034(+) (11)	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os05g49790.1	"DUF538 domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221360.1.S1_x_at	A	A1TS	POPTR_0278s00220	POPTR_0278s00220 (11)	scaffold_1:15003492-15003595(+) (11)//scaffold_278:35472-35575(-) (11)	NA	NA	NA	AT3G47680.1	DNA binding 	LOC_Os12g07180.1	"transposon protein, putative, Pong sub-class, expressed"	Medtr2g071730.1	Lipocalin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221361.1.S1_s_at	A	A1TS	POPTR_0017s02670	POPTR_0017s02670 (11)	scaffold_17:1910361-1917182(-) (11)	NA	Q9SYF5	GDSL esterase/lipase 3	AT1G53990.1	GDSL-motif lipase 3 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.221362.1.S1_at	A	A1TS	POPTR_0007s02710	POPTR_0007s02710 (9)	scaffold_7:1577526-1577875(+) (10)	NA	O65468	Cysteine-rich receptor-like protein kinase 8	AT4G23160.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 8 	LOC_Os07g35260.2	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235005_21.1	Tyrosine protein kinase AC235005.1 68612-71230 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221371.1.S1_x_at	A	A1TS	POPTR_0019s12730	POPTR_0019s12730 (10)	scaffold_19:13693075-13693672(+) (10)	NA	Q40392	TMV resistance protein N	AT4G16860.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.221373.1.S1_at	A	A1TS	POPTR_0009s12350	POPTR_0009s12350 (11)	scaffold_9:10085036-10086189(+) (11)	NA	A4IHD2	Helicase ARIP4	AT2G16390.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os07g25390.1	"DRD1, putative, expressed"	Medtr7g027270.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.221374.1.S1_at	A	A1TS	POPTR_0098s00330	POPTR_0098s00330 (11)	scaffold_98:65305-65565(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221374.1.S1_s_at	A	A4TS	POPTR_0098s00240	POPTR_0098s00240 (11)//POPTR_0098s00330 (11)//POPTR_0016s02150 (10)//POPTR_0098s00270 (9)	scaffold_16:1040025-1040294(+) (11)//scaffold_98:15996-16265(+) (11)//scaffold_98:31067-31310(+) (9)//scaffold_98:65557-65830(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221375.1.S1_at	A	A1TS	POPTR_0098s00250	POPTR_0098s00250 (11)	scaffold_98:23185-23698(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221384.1.S1_s_at	A	A2TS	POPTR_0011s13660	POPTR_0011s13660 (10)//POPTR_0011s13670 (9)	scaffold_11:16356626-16356982(-) (11)//scaffold_11:16363683-16363970(-) (9)//scaffold_11:16386066-16386422(-) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G03670.1	ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221385.1.S1_at	A	A1TS	POPTR_0011s13760	POPTR_0011s13760 (11)	scaffold_11:16420546-16421593(-) (11)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT4G21200.1	gibberellin 2-oxidase 8 	LOC_Os04g44150.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr7g047260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.221387.1.S1_at	A	A1TS	POPTR_1546s00200	POPTR_1546s00200 (11)	scaffold_1546:777-1198(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221388.1.S1_at	A	A1TS	POPTR_0023s00660	POPTR_0023s00660 (11)	scaffold_23:640763-641287(-) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT2G19400.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g046770.1	"Serine/threonine protein kinase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221389.1.S1_s_at	A	A3TS	POPTR_0006s12030	POPTR_0017s07360 (11)//POPTR_0006s12030 (11)//POPTR_0017s10850 (11)	scaffold_17:5725346-5725443(+) (11)//scaffold_17:10390154-10390251(+) (11)//scaffold_6:9202161-9202258(-) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT2G36670.2	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221390.1.S1_x_at	A	A2MS	POPTR_0011s06120	POPTR_0011s06120 (11)//POPTR_0011s06460 (9)	scaffold_11:6178160-6178329(-) (11)//scaffold_11:6847809-6847972(-) (9)	POPTR_0011s06220 (7)//POPTR_0011s06580 (7)//POPTR_0011s06340 (6)//POPTR_0011s06490 (6)	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221391.1.S1_s_at	A	A2TS	POPTR_0001s44760	POPTR_0171s00210 (11)//POPTR_0001s44760 (11)	scaffold_1:45171512-45171629(-) (11)//scaffold_171:6452-6569(-) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os03g36760.2	expressed protein	Medtr3g067690.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221394.1.S1_at	A	A1TA	POPTR_0017s07410	POPTR_0017s07410 (10)	scaffold_17:5758614-5758792(-) (10)//scaffold_17:5786245-5786423(-) (11)//scaffold_2000:1658-1836(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g073470.1	"Uncharacterized 24.1 kDa protein in LEF4-P33 intergenic region, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221395.1.S1_at	A	A1TS	POPTR_0017s07420	POPTR_0017s07420 (11)	scaffold_17:5770946-5771031(-) (11)	NA	NA	NA	AT4G14000.1	Putative methyltransferase family protein 	LOC_Os09g19570.1	"AGAP009532-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221396.1.S1_s_at	A	A2TS	POPTR_0004s16180	POPTR_0004s16190 (11)//POPTR_0004s16180 (11)	scaffold_4:16615765-16616228(-) (11)//scaffold_4:16621154-16621625(-) (11)	NA	O64600	F-box protein At1g70360	AT1G70360.1	F-box family protein 	LOC_Os03g12940.1	"OsFBO13 - F-box and other domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221397.1.S1_at	A	A1TS	POPTR_0018s14560	POPTR_0018s14560 (9)	scaffold_18:14712211-14712404(+) (10)	NA	P38605	Cycloartenol synthase	AT2G07050.1	cycloartenol synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr5g008860.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.221398.1.S1_s_at	A	A1TS	POPTR_0017s05800	POPTR_0017s05800 (11)	scaffold_17:4526636-4526964(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221407.1.S1_at	A	A1MS	POPTR_0002s08820	POPTR_0002s08820 (11)	scaffold_2:6200603-6200817(+) (11)	NA	O94235	Serine/threonine-protein kinase mph1	AT1G77720.1	putative protein kinase 1 	LOC_Os03g49750.1	"protein kinase family protein, putative, expressed"	Medtr3g098080.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221410.1.S1_s_at	A	A1TS	POPTR_0012s14170	POPTR_0012s14170 (11)	scaffold_12:14155598-14156223(-) (11)	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os06g03930.1	"cytochrome P450 86A1, putative, expressed"	AC233070_8.1	Cytochrome P450 AC233070.4 41303-37114 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.221413.1.S1_s_at	A	A1TS	POPTR_0004s20660	POPTR_0004s20660 (11)	scaffold_4:20111110-20111657(-) (11)	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os01g16020.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221415.1.S1_s_at	A	A2TS	POPTR_0008s18530	POPTR_0008s18530 (11)//POPTR_0018s14140 (11)	scaffold_18:14398348-14398549(-) (11)//scaffold_8:12504836-12505037(-) (11)	NA	O64474	Putative cadmium/zinc-transporting ATPase 2	AT2G19110.1	heavy metal atpase 4 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr2g041260.1	Cof protein; Heavy metal translocating P-type ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221420.1.S1_at	A	A1TS	POPTR_0003s00500	POPTR_0003s00500 (11)	scaffold_3:304125-304280(-) (11)	NA	P60621	Cytochrome c oxidase subunit 1	ATMG01360.1	cytochrome  oxidase 	LOC_Os12g33946.1	"cytochrome c oxidase subunit 1, putative"	Medtr1g006730.1	"Cytochrome c oxidase, subunit I "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221420.1.S1_x_at	A	A1TS	POPTR_0003s00500	POPTR_0003s00500 (11)	scaffold_3:304125-304353(-) (11)	NA	P60621	Cytochrome c oxidase subunit 1	ATMG01360.1	cytochrome  oxidase 	LOC_Os12g33946.1	"cytochrome c oxidase subunit 1, putative"	Medtr1g006730.1	"Cytochrome c oxidase, subunit I "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221422.1.S1_x_at	A	A1TS	POPTR_0008s23070	POPTR_0008s23070 (10)	scaffold_8:18301133-18301317(-) (11)	POPTR_0008s23060 (6)	O50001	Major allergen Pru ar 1	AT1G24020.2	MLP-like protein 423 	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.221425.1.S1_at	A	A1TS	POPTR_0017s00560	POPTR_0017s00560 (11)	scaffold_17:247869-248696(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221425.1.S1_x_at	A	A1TS	POPTR_0017s00560	POPTR_0017s00560 (11)	scaffold_17:247869-248695(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221435.1.S1_at	A	A1TS	POPTR_0007s04500	POPTR_0007s04500 (11)	scaffold_7:2792202-2792741(+) (11)	NA	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.221435.1.S1_s_at	A	A2TS	POPTR_0007s04500	POPTR_0007s04510 (11)//POPTR_0007s04500 (11)	scaffold_7:2792173-2792595(+) (11)//scaffold_7:2803178-2803597(+) (11)//scaffold_7:2812797-2813215(+) (9)	POPTR_0007s04520 (8)	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.221436.1.S1_at	A	A1TS	POPTR_0007s04550	POPTR_0007s04550 (11)	scaffold_7:2824657-2825053(+) (11)	NA	Q55EX9	Putative methyltransferase DDB_G0268948	AT4G22530.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g40660.1	"methyltransferase, putative, expressed"	Medtr7g107220.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.221437.1.S1_s_at	A	A2TS	POPTR_0007s04570	POPTR_0007s04570 (11)//POPTR_0007s04560 (10)	scaffold_7:2828433-2836116(+) (11)//scaffold_7:2835893-2836187(+) (10)	NA	P57681	Probable prenylcysteine oxidase	AT5G63910.1	farnesylcysteine lyase 	LOC_Os04g59630.1	"prenylcysteine oxidase 1 precursor, putative, expressed"	Medtr3g142890.1	Prenylcysteine lyase 	GO:0030328|prenylcysteine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	"GO:0016670|""oxidoreductase activity, acting on sulfur group of donors, oxygen as acceptor"""	NA
PtpAffx.221438.1.S1_s_at	A	A1MS	POPTR_0007s04580	POPTR_0007s04580 (11)	scaffold_7:2842207-2842299(-) (11)	NA	Q9FY89	Vacuolar protein sorting-associated protein 20 homolog 2	AT5G09260.1	vacuolar protein sorting-associated protein 20.2 	LOC_Os02g38300.1	"SNF7 domain containing protein, putative, expressed"	Medtr3g142880.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.221439.1.S1_at	A	A1TS	POPTR_0006s16170	POPTR_0006s16170 (11)	scaffold_6:14094613-14094876(-) (11)	NA	NA	NA	AT5G19610.1	GNOM-like 2 	LOC_Os03g46330.1	"pattern formation protein EMB30, putative, expressed"	Medtr6g101970.1	SEC7-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221441.1.S1_s_at	A	A1TS	POPTR_0003s02310	POPTR_0003s02310 (11)	scaffold_3:2384265-2384690(+) (11)	NA	NA	NA	AT3G22380.2	time for coffee 	NA	NA	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221443.1.S1_at	A	A1TS	POPTR_0017s10970	POPTR_0017s10970 (11)	scaffold_17:10552016-10552281(+) (11)	NA	Q04903	Protein farnesyltransferase subunit beta	AT5G40280.1	Prenyltransferase family protein 	LOC_Os01g53600.1	"farnesyltransferase subunit beta, putative, expressed"	Medtr4g133540.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.221454.1.S1_s_at	A	A2TS	POPTR_0019s01820	POPTR_0019s01820 (11)//POPTR_0019s01830 (11)	scaffold_19:1573253-1573835(-) (11)//scaffold_19:1583884-1584465(-) (11)	NA	P09800	Legumin B	AT5G44120.3	RmlC-like cupins superfamily protein 	LOC_Os01g55690.1	"glutelin, putative, expressed"	Medtr1g086770.2	Cupin region 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.221457.1.S1_at	A	A1TS	POPTR_0014s01520	POPTR_0014s01520 (11)	scaffold_14:1447634-1447870(+) (11)	NA	Q8R2N2	Cirhin	AT4G07410.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g52470.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g015510.1	"Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221459.1.S1_s_at	A	A1TS	POPTR_0016s11940	POPTR_0016s11940 (11)	scaffold_16:11115214-11115381(-) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.221461.1.S1_at	A	A1TS	POPTR_0002s24630	POPTR_0002s24630 (9)	scaffold_2:21950028-21950584(-) (11)	NA	Q6PD26	GPI transamidase component PIG-S	AT3G07180.1	GPI transamidase component PIG-S-related 	LOC_Os01g67960.1	"GPI transamidase component PIG-S-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221464.1.S1_at	A	A1TS	POPTR_0012s01890	POPTR_0012s01890 (9)	scaffold_12:1475940-1476359(-) (10)	NA	Q91DM0	Genome polyprotein	NA	NA	LOC_Os08g18210.1	"retrotransposon protein, putative, unclassified"	AC234026_1.1	RNA-directed DNA polymerase (Reverse transcriptase) AC234026.1 2154-4412 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006278|RNA-dependent DNA replication	GO:0003964|RNA-directed DNA polymerase activity||GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.221465.1.S1_at	A	A1TS	POPTR_0012s01890	POPTR_0012s01890 (9)	scaffold_12:1475653-1475702(-) (9)	NA	Q91DM0	Genome polyprotein	NA	NA	LOC_Os08g18210.1	"retrotransposon protein, putative, unclassified"	AC234026_1.1	RNA-directed DNA polymerase (Reverse transcriptase) AC234026.1 2154-4412 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006278|RNA-dependent DNA replication	GO:0003964|RNA-directed DNA polymerase activity||GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.221465.1.S1_x_at	A	A1TS	POPTR_0012s01890	POPTR_0012s01890 (9)	scaffold_12:1475563-1475740(-) (9)	NA	Q91DM0	Genome polyprotein	NA	NA	LOC_Os08g18210.1	"retrotransposon protein, putative, unclassified"	AC234026_1.1	RNA-directed DNA polymerase (Reverse transcriptase) AC234026.1 2154-4412 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006278|RNA-dependent DNA replication	GO:0003964|RNA-directed DNA polymerase activity||GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.221466.1.S1_at	A	A1TS	POPTR_0130s00220	POPTR_0130s00220 (11)	scaffold_130:40862-41116(+) (11)	NA	Q9LK09	Syntaxin-32	AT3G24350.1	syntaxin of plants  32 	LOC_Os01g08400.1	"syntaxin, putative, expressed"	Medtr3g136000.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.221467.1.S1_at	A	A1TS	POPTR_0130s00200	POPTR_0130s00200 (11)	scaffold_130:8704-8878(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g158850.1	General substrate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221469.1.S1_s_at	A	A1TS	POPTR_0018s11450	POPTR_0018s11450 (11)	scaffold_18:12177126-12177351(+) (11)	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.221470.1.S1_at	A	A1MS	POPTR_0014s05850	POPTR_0014s05850 (9)	scaffold_14:4383547-4384231(+) (9)	NA	Q84WW5	Vesicle-associated protein 1-3	AT4G00170.1	Plant VAMP (vesicle-associated membrane protein) family protein 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr5g012520.1	Major sperm protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221471.1.S1_s_at	A	A1MS	POPTR_0005s03280	POPTR_0005s03280 (9)	scaffold_5:2148992-2149278(-) (11)	NA	Q9SSL9	Leucine-rich repeat receptor-like protein kinase PEPR1	AT1G73080.1	PEP1 receptor 1 	LOC_Os05g07820.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative"	Medtr3g123040.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.221474.1.S1_at	A	A1TS	POPTR_0003s02220	POPTR_0003s02220 (9)	scaffold_3:2320028-2328039(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221477.1.S1_at	A	A1TS	POPTR_0003s02310	POPTR_0003s02310 (9)	scaffold_3:2384767-2384889(+) (9)	NA	NA	NA	AT3G22380.2	time for coffee 	NA	NA	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221478.1.S1_a_at	A	A1TS	POPTR_0003s02320	POPTR_0003s02320 (9)	scaffold_3:2401535-2401567(+) (9)//scaffold_3:2401569-2401601(+) (9)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221479.1.S1_s_at	A	A1TS	POPTR_0003s02350	POPTR_0003s02350 (11)	scaffold_3:2415474-2415657(-) (11)	NA	NA	NA	AT1G15760.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g55120.1	"jp18, putative, expressed"	Medtr2g126910.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22148.1.S1_at	A	A1TS	POPTR_0001s37040	POPTR_0001s37040 (11)	scaffold_1:35857980-35858746(-) (11)	NA	P30181	DNA topoisomerase 1	AT5G55310.1	DNA topoisomerase 1 beta 	LOC_Os08g05840.1	"DNA topoisomerase 1, putative, expressed"	Medtr3g156670.1	Eukaryotic-like DNA topoisomerase I; ; ; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0003917|DNA topoisomerase type I activity	GO:0005694|chromosome
PtpAffx.221480.1.S1_at	A	A1TS	POPTR_0003s02360	POPTR_0003s02360 (11)	scaffold_3:2427845-2428575(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221485.1.S1_at	A	A1TS	POPTR_0003s02420	POPTR_0003s02420 (11)	scaffold_3:2512602-2516515(+) (11)	NA	Q8IUF1	COBW domain-containing protein 2	AT1G80480.1	plastid transcriptionally active 17 	LOC_Os02g55630.1	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221488.1.S1_x_at	A	A1TS	POPTR_0003s02460	POPTR_0003s02460 (11)	scaffold_3:2555255-2555326(+) (11)	NA	D4N502	Codeine O-demethylase	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08032.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr8g088440.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.221489.1.S1_at	A	A1MS	POPTR_0003s02480	POPTR_0003s02480 (11)	scaffold_3:2565339-2565969(+) (11)	NA	Q8S340	Purple acid phosphatase 22	AT3G52820.1	purple acid phosphatase 22 	LOC_Os04g33530.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g127120.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.221491.1.S1_at	A	A1TS	POPTR_0003s02480	POPTR_0003s02480 (11)	scaffold_3:2566843-2567744(+) (11)	NA	Q8S340	Purple acid phosphatase 22	AT3G52820.1	purple acid phosphatase 22 	LOC_Os04g33530.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g127120.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.221492.1.S1_at	A	A1TS	POPTR_0003s02510	POPTR_0003s02510 (11)	scaffold_3:2594786-2597709(+) (11)	NA	Q5T1Q4	Solute carrier family 35 member F1	AT3G59310.1	Eukaryotic protein of unknown function (DUF914) 	LOC_Os05g37200.1	"solute carrier family 35 member F2, putative, expressed"	Medtr7g127060.1	"Protein of unknown function DUF914, eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.221493.1.S1_at	A	A1TS	POPTR_0003s02530	POPTR_0003s02530 (11)	scaffold_3:2611570-2612164(-) (11)	NA	NA	NA	AT1G15290.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221494.1.S1_at	A	A1TS	POPTR_0003s02540	POPTR_0003s02540 (11)	scaffold_3:2643981-2646594(+) (11)	NA	A5UUN1	Formamidopyrimidine-DNA glycosylase	AT1G52500.2	MUTM homolog-1 	LOC_Os08g21330.1	"formamidopyrimidine-DNA glycosylase, putative, expressed"	Medtr2g126800.1	"Formamidopyrimidine-DNA glycolase; Formamidopyrimidine-DNA glycosylase, catalytic "	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0016799|""hydrolase activity, hydrolyzing N-glycosyl compounds""||GO:0003906|DNA-(apurinic or apyrimidinic site) lyase activity||GO:0003684|damaged DNA binding||GO:0008270|zinc ion binding"	NA
PtpAffx.221495.1.S1_at	A	A1TS	POPTR_0003s02580	POPTR_0003s02580 (11)	scaffold_3:2670835-2671545(+) (11)	NA	Q9SSQ4	Protein FAR1-RELATED SEQUENCE 6	AT1G52520.1	FAR1-related sequence 6 	LOC_Os03g62660.2	"transposon protein, putative, unclassified, expressed"	Medtr2g034270.1	"FAR1; Heavy metal transport/detoxification protein; Zinc finger, SWIM-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221496.1.S1_at	A	A1TS	POPTR_0003s02590	POPTR_0003s02590 (11)	scaffold_3:2682702-2683033(-) (11)	NA	Q9LSB8	Putative pentatricopeptide repeat-containing protein At3g15930	AT3G15930.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g08120.1	"pentatricopeptide, putative, expressed"	Medtr4g005700.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221497.1.S1_at	A	A1TS	POPTR_0003s02620	POPTR_0003s02620 (11)	scaffold_3:2714446-2715720(-) (11)	NA	B7KEJ8	Chaperone protein dnaJ	AT1G80030.2	Molecular chaperone Hsp40/DnaJ family protein 	LOC_Os02g56040.1	"chaperone protein dnaJ, putative, expressed"	Medtr2g126720.1	Chaperone DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.221498.1.S1_s_at	A	A1MS	POPTR_0003s02650	POPTR_0003s02650 (10)	scaffold_3:2742762-2743186(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT1G52540.1	Protein kinase superfamily protein 	LOC_Os02g09359.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g126640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221499.1.S1_at	A	A1TS	POPTR_0003s02670	POPTR_0003s02670 (11)	scaffold_3:2766307-2769112(+) (11)	NA	NA	NA	AT3G15820.1	phosphatidic acid phosphatase-related / PAP2-related 	LOC_Os06g40500.1	expressed protein	Medtr4g005630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221500.1.S1_at	A	A1TS	POPTR_0003s02690	POPTR_0003s02690 (9)	scaffold_3:2778954-2779949(+) (9)	NA	Q9SSC9	Histidine-containing phosphotransfer protein 6	AT1G80100.1	histidine phosphotransfer protein 6 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g126560.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.221501.1.S1_at	A	A1MS	POPTR_0003s02720	POPTR_0003s02720 (10)	scaffold_3:2797911-2798080(-) (10)	NA	NA	NA	AT3G15790.1	methyl-CPG-binding domain 11 	LOC_Os12g42550.1	"methyl-CpG binding domain containing protein, putative, expressed"	Medtr8g120840.1	Methyl-CpG binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221503.1.S1_at	A	A1TS	POPTR_0003s02750	POPTR_0003s02750 (11)	scaffold_3:2835711-2836325(+) (11)	NA	Q9XI33	Ethylene-responsive transcription factor WIN1	AT1G15360.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g10760.1	"AP2 domain containing protein, expressed"	Medtr2g126330.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.221504.1.S1_at	A	A1TS	POPTR_0003s02820	POPTR_0003s02820 (9)	scaffold_3:2928496-2930285(+) (9)	NA	Q86K80	UPF0420 protein	AT3G45890.1	"Protein of unknown function, DUF647 "	LOC_Os04g22360.1	"DUF647 domain containing protein, putative, expressed"	Medtr5g025140.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221505.1.S1_at	A	A1TS	POPTR_0003s02880	POPTR_0003s02880 (11)	scaffold_3:3011388-3012406(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221506.1.S1_at	A	A1TS	POPTR_0003s02890	POPTR_0003s02890 (11)	scaffold_3:3024110-3024334(-) (11)	NA	O82155	Dof zinc finger protein DOF1.7	AT1G51700.1	DOF zinc finger protein 1 	LOC_Os01g09720.1	"dof zinc finger domain containing protein, putative"	AC235757_43.1	"Zinc finger, Dof-type AC235757.1 157398-155752 E EGN_Mt090430 200"	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.221507.1.S1_s_at	A	A2TS	POPTR_0001s20400	POPTR_0003s02900 (11)//POPTR_0001s20400 (11)	scaffold_1:18342595-18344257(-) (11)//scaffold_3:3061324-3063092(-) (11)	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.2	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os02g13110.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221507.1.S1_x_at	A	A1TS	POPTR_0003s02900	POPTR_0003s02900 (11)	scaffold_3:3060708-3063087(-) (11)	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.1	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os02g13110.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221508.1.S1_at	A	A1TS	POPTR_0003s02950	POPTR_0003s02950 (11)	scaffold_3:3139651-3140214(-) (11)	NA	Q8LGU1	ABC transporter C family member 8	AT3G21250.2	multidrug resistance-associated protein 6 	LOC_Os05g10730.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235757_52.1	"Cyclic peptide transporter; HAD-superfamily subfamily IB hydrolase, hypothetical 1 AC235757.1 217448-224457 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.221511.1.S1_at	A	A1TS	POPTR_0003s02990	POPTR_0003s02990 (11)	scaffold_3:3253524-3254025(+) (11)	NA	Q9C888	Phospholipase D epsilon	AT1G55180.1	phospholipase D alpha 4 	LOC_Os09g25390.1	"phospholipase D, putative, expressed"	Medtr2g121470.1	"Phospholipase D, plant "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.221512.1.S1_at	A	A1TS	POPTR_0003s03010	POPTR_0003s03010 (11)	scaffold_3:3265727-3265819(-) (11)	NA	NA	NA	AT1G55170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). 	LOC_Os12g09089.2	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g121450.1	"Protein kinase PKN/PRK1, effector, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221513.1.S1_at	A	A1TS	POPTR_0003s03020	POPTR_0003s03020 (11)	scaffold_3:3279856-3280173(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221514.1.S1_x_at	A	A1TS	POPTR_0010s03950	POPTR_0010s03950 (11)	scaffold_10:4668618-4668790(+) (11)//scaffold_11:12726153-12726289(+) (11)//scaffold_12:6056799-6056971(+) (11)//scaffold_13:8164590-8164943(+) (11)//scaffold_13:9828289-9834805(+) (11)//scaffold_136:51271-51443(-) (11)//scaffold_14:14890666-14891487(+) (11)//scaffold_14:17559028-17568757(+) (11)//scaffold_14:17568983-17569336(+) (11)//scaffold_15:2347935-2348504(+) (10)//scaffold_15:2348043-2357654(+) (10)//scaffold_15:7452658-7453011(-) (11)//scaffold_19:7824205-7824594(+) (11)//scaffold_19:7824493-7829896(+) (10)//scaffold_19:9134855-9135244(+) (11)//scaffold_2:17408119-17408580(+) (11)//scaffold_2:17538842-17539339(+) (11)//scaffold_2:17578666-17578983(-) (11)//scaffold_2:19973064-19973417(+) (11)//scaffold_2:19981488-19981624(+) (10)//scaffold_2166:404-612(-) (11)//scaffold_24:314469-314858(+) (10)//scaffold_2481:441-686(+) (11)//scaffold_534:8932-9431(-) (11)//scaffold_544:7724-7896(-) (11)//scaffold_544:13536-13708(-) (11)//scaffold_6:14742338-14742474(-) (10)//scaffold_6:20827959-20828131(-) (11)//scaffold_7:8193388-8193686(-) (11)//scaffold_7:8337649-8337858(-) (11)//scaffold_8:14462965-14463137(-) (11)//scaffold_8:16185831-16186220(+) (11)//scaffold_9:157135-157524(+) (11)//scaffold_9:371547-374748(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.221516.1.S1_at	A	A1TS	POPTR_0003s03040	POPTR_0003s03040 (11)	scaffold_3:3366193-3366376(-) (11)	NA	Q5QMN3	DEAD-box ATP-dependent RNA helicase 20	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os01g10050.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.221517.1.S1_at	A	A1TS	POPTR_0003s03070	POPTR_0003s03070 (9)	scaffold_3:3434998-3435723(+) (10)	NA	NA	NA	AT1G17665.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to 146 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221518.1.S1_at	A	A1TS	POPTR_0003s03080	POPTR_0003s03080 (11)	scaffold_3:3437674-3438913(+) (11)	NA	NA	NA	AT1G17665.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to 146 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). 	LOC_Os01g10080.2	expressed protein	Medtr2g121310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221519.1.S1_at	A	A1TS	POPTR_0003s03100	POPTR_0003s03100 (11)	scaffold_3:3452362-3452651(-) (11)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22152.1.S1_at	A	A1TS	POPTR_0015s11990	POPTR_0015s11990 (11)	scaffold_15:12442102-12442935(+) (11)	NA	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129920.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221521.1.S1_at	A	A1TS	POPTR_0003s03130	POPTR_0003s03130 (11)	scaffold_3:3510493-3510977(+) (11)	NA	Q9S746	Protein HOTHEAD	AT1G72970.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os09g19930.1	"HOTHEAD precursor, putative, expressed"	Medtr2g121260.1	ABC transporter related; GMC oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.221522.1.S1_x_at	A	A1TS	POPTR_0003s04570	POPTR_0003s04570 (11)	scaffold_3:5287432-5287935(+) (11)	POPTR_0011s02270 (7)	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221525.1.S1_at	A	A1TS	POPTR_0003s04520	POPTR_0003s04520 (11)	scaffold_3:5234220-5234735(+) (11)	NA	Q9LRW1	LOB domain-containing protein 22	AT3G13850.1	LOB domain-containing protein 22 	LOC_Os08g31080.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g018690.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221526.1.S1_at	A	A1TS	POPTR_0003s04500	POPTR_0003s04500 (10)	scaffold_3:5220716-5220758(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221526.1.S1_x_at	A	A1TS	POPTR_0003s04500	POPTR_0003s04500 (9)	scaffold_3:5220717-5220881(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221527.1.S1_s_at	A	A2TS	POPTR_0003s04430	POPTR_0003s04430 (11)//POPTR_0003s04360 (10)	scaffold_3:5079749-5080356(-) (10)//scaffold_3:5133501-5134108(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221528.1.S1_s_at	A	A3TS	POPTR_0003s04350	POPTR_0003s04390 (10)//POPTR_0003s04350 (10)//POPTR_0003s04420 (9)	scaffold_3:5070188-5070748(+) (10)//scaffold_3:5097823-5098383(+) (10)//scaffold_3:5123188-5123748(+) (9)	NA	O59797	Putative nucleosome assembly protein C364.06	AT2G19480.3	nucleosome assembly protein 1;2 	LOC_Os05g46230.1	"NAP domain containing protein, putative, expressed"	Medtr2g046220.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.221529.1.S1_at	A	A2TS	POPTR_0003s04360	POPTR_0003s04360 (11)//POPTR_0003s04430 (11)	scaffold_3:5079828-5080097(-) (11)//scaffold_3:5133580-5133849(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221533.1.S1_s_at	A	A1TS	POPTR_0003s04300	POPTR_0003s04300 (11)	scaffold_3:5010141-5010732(+) (11)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.221536.1.S1_at	A	A1TS	POPTR_0003s04290	POPTR_0003s04290 (11)	scaffold_3:5005313-5005972(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G07390.1	receptor like protein 1 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.221537.1.S1_x_at	A	A1TS	POPTR_0003s04280	POPTR_0003s04280 (11)	scaffold_3:4996740-4998537(+) (11)	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221541.1.S1_at	A	A1TS	POPTR_0019s02820	POPTR_0019s02820 (9)	scaffold_19:2656471-2656503(+) (9)	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221541.1.S1_x_at	A	A1TS	POPTR_0019s02820	POPTR_0019s02820 (11)	scaffold_19:2656471-2656887(+) (11)	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221543.1.S1_at	A	A1TS	POPTR_0003s04220	POPTR_0003s04220 (11)	scaffold_3:4928717-4929688(-) (11)	NA	C4B8C4	EPIDERMAL PATTERNING FACTOR-like protein 3	AT3G13898.1	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). 	LOC_Os02g51950.1	expressed protein	Medtr8g020990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221544.1.S1_at	A	A2TS	POPTR_0003s04210	POPTR_2058s00010 (11)//POPTR_0003s04210 (11)	scaffold_2058:370-2569(-) (11)//scaffold_3:4927486-4927943(+) (11)	NA	NA	NA	AT1G14560.1	Mitochondrial substrate carrier family protein 	NA	NA	Medtr3g139730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221545.1.S1_at	A	A1TS	POPTR_0003s04180	POPTR_0003s04180 (11)	scaffold_3:4887270-4887593(-) (11)	NA	Q9SGG3	Putative phospholipid-transporting ATPase 5	AT1G72700.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g36990.1	"phospholipid-transporting ATPase 4, putative, expressed"	Medtr2g120840.1	"ATPase, E1-E2 type "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.221546.1.S1_at	A	A1TS	POPTR_0017s02100	POPTR_0017s02100 (9)	scaffold_17:1524362-1526019(+) (11)	NA	NA	NA	AT3G03190.1	glutathione S-transferase F11 	NA	NA	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221547.1.S1_at	A	A1TS	POPTR_0017s02090	POPTR_0017s02090 (11)	scaffold_17:1521427-1522488(+) (11)	NA	Q96324	Glutathione S-transferase	AT5G17220.1	glutathione S-transferase phi 12 	LOC_Os03g04260.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221548.1.S1_a_at	A	A1TS	POPTR_0017s02070	POPTR_0017s02070 (11)	scaffold_17:1506448-1506483(-) (11)//scaffold_17:1506481-1506516(-) (11)	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os11g38920.2	"HVA22, putative, expressed"	Medtr4g121400.1	"TB2/DP1 and HVA22 related protein; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221548.1.S1_at	A	A1TS	POPTR_0017s02070	POPTR_0017s02070 (11)	scaffold_17:1506280-1507245(-) (11)	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os11g38920.2	"HVA22, putative, expressed"	Medtr4g121400.1	"TB2/DP1 and HVA22 related protein; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221549.1.S1_at	A	A1TS	POPTR_0017s02060	POPTR_0017s02060 (10)	scaffold_17:1497604-1498383(-) (11)	NA	O24301	Sucrose synthase 2	AT5G37180.1	sucrose synthase 5 	LOC_Os04g24430.1	"sucrose synthase, putative, expressed"	Medtr5g084740.1	Sucrose synthase; N-6 Adenine-specific DNA methylase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.221550.1.S1_at	A	A1TS	POPTR_0017s02050	POPTR_0017s02050 (11)	scaffold_17:1496670-1496778(+) (11)	NA	Q8H1U4	Anaphase-promoting complex subunit 5	AT1G06590.1	unknown protein; Has 380 Blast hits to 268 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 73; Plants - 49; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). 	NA	NA	Medtr5g098240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221550.1.S1_x_at	A	A1TS	POPTR_0017s02050	POPTR_0017s02050 (11)	scaffold_17:1496472-1496773(+) (11)	NA	Q8H1U4	Anaphase-promoting complex subunit 5	AT1G06590.1	unknown protein; Has 380 Blast hits to 268 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 73; Plants - 49; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). 	NA	NA	Medtr5g098240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221551.1.S1_at	A	A1TS	POPTR_0017s02040	POPTR_0017s02040 (11)	scaffold_17:1492009-1492651(-) (11)	NA	Q8L8W0	ALA-interacting subunit 5	AT1G79450.1	ALA-interacting subunit 5 	LOC_Os03g02830.1	"cell cycle control protein, putative, expressed"	Medtr7g102850.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.221552.1.S1_at	A	A1TS	POPTR_0017s02030	POPTR_0017s02030 (11)	scaffold_17:1490321-1491575(+) (11)	NA	NA	NA	AT1G65900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 306 Blast hits to 306 proteins in 119 species: Archae - 19; Bacteria - 238; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os03g02820.1	expressed protein	Medtr3g086760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221553.1.S1_at	A	A1TS	POPTR_0017s02020	POPTR_0017s02020 (11)	scaffold_17:1482588-1482943(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT1G65910.1	NAC domain containing protein 28 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr3g086750.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.221554.1.S1_at	A	A1TS	POPTR_0017s01980	POPTR_0017s01980 (11)	scaffold_17:1448716-1449186(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221556.1.S1_at	A	A1TS	POPTR_0017s01950	POPTR_0017s01950 (11)	scaffold_17:1429924-1430480(-) (11)	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	AC233100_46.1	NB-ARC AC233100.6 148316-150448 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.221558.1.S1_at	A	A1TS	POPTR_0017s01940	POPTR_0017s01940 (11)	scaffold_17:1398031-1404574(+) (11)//scaffold_17:1417608-1417653(+) (11)//scaffold_17:1425125-1425170(+) (11)	NA	Q9FJR0	Regulator of nonsense transcripts 1 homolog	AT1G65780.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g49310.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221558.1.S1_x_at	A	A1TS	POPTR_0017s01940	POPTR_0017s01940 (11)	scaffold_17:1397430-1404574(+) (11)//scaffold_17:1417002-1417653(+) (11)//scaffold_17:1424519-1425170(+) (11)	NA	Q9FJR0	Regulator of nonsense transcripts 1 homolog	AT1G65780.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g49310.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221559.1.S1_at	A	A2TS	POPTR_0017s01930	POPTR_0017s01930 (11)//POPTR_0017s01910 (9)	scaffold_17:1404692-1405295(+) (9)//scaffold_17:1417771-1418374(+) (11)//scaffold_17:1425288-1425891(+) (10)	NA	Q00416	Helicase SEN1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g49340.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084200.1	"tRNA-splicing endonuclease positive effector-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22156.1.A1_a_at	A	A1TS	POPTR_0004s04220	POPTR_0004s04220 (11)	scaffold_4:3037177-3037624(+) (11)	NA	Q9ZPH2	Monothiol glutaredoxin-S17	AT4G04950.1	thioredoxin family protein 	LOC_Os10g35720.1	"OsGrx_S17 - glutaredoxin subgroup II, expressed"	AC233659_21.1	Glutaredoxin-related protein; Thioredoxin-like fold AC233659.1 95734-92338 F EGN_Mt090430 200	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.22156.3.A1_a_at	A	A2TS	POPTR_0008s04580	POPTR_0010s22270 (11)//POPTR_0008s04580 (11)	scaffold_10:19231939-19232235(-) (11)//scaffold_8:2613878-2614171(+) (11)	NA	Q2YDD1	FGFR1 oncogene partner	AT3G55005.1	tonneau 1b (TON1b) 	LOC_Os11g01170.1	"tonneau 1b, putative, expressed"	Medtr1g146540.1	Lissencephaly type-1-like homology motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22156.3.A1_at	A	A1TS	POPTR_0008s04580	POPTR_0008s04580 (11)	scaffold_8:2613852-2615057(+) (11)	NA	Q2YDD1	FGFR1 oncogene partner	AT3G55005.1	tonneau 1b (TON1b) 	LOC_Os11g01170.1	"tonneau 1b, putative, expressed"	Medtr1g146540.1	Lissencephaly type-1-like homology motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221560.1.S1_at	A	A1TS	POPTR_0017s01930	POPTR_0017s01930 (10)	scaffold_17:1416500-1417002(+) (10)	POPTR_0017s01940 (8)//POPTR_0017s01910 (8)//POPTR_0017s01900 (7)	Q00416	Helicase SEN1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g49340.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084200.1	"tRNA-splicing endonuclease positive effector-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221563.1.S1_at	A	A1TS	POPTR_0017s01870	POPTR_0017s01870 (11)	scaffold_17:1364623-1365336(-) (11)	NA	Q9FGV1	Auxin response factor 8	AT5G37020.1	auxin response factor 8 	LOC_Os04g57610.1	"auxin response factor, putative, expressed"	Medtr5g084140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.221564.1.S1_at	A	A1TS	POPTR_0017s01850	POPTR_0017s01850 (9)	scaffold_17:1357343-1357902(-) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g58330.1	expressed protein	Medtr3g069190.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221565.1.S1_at	A	A2TS	POPTR_0017s01830	POPTR_0017s01830 (10)//POPTR_0017s01840 (9)	scaffold_17:1342324-1343681(-) (11)//scaffold_17:1351382-1352709(+) (10)	NA	Q9FNE1	Cysteine-rich receptor-like protein kinase 42	AT5G40380.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 42 	LOC_Os11g28104.1	"TKL_IRAK_DUF26-lf.4 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr3g086260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221566.1.S1_at	A	A1TS	POPTR_0017s01825	POPTR_0017s01825 (11)	scaffold_17:1339900-1340031(+) (11)	NA	Q9FIF7	"Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic"	AT5G59200.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g44299.1	"pentatricopeptide, putative"	Medtr8g029460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221566.1.S1_x_at	A	A1TS	POPTR_0017s01825	POPTR_0017s01825 (10)	scaffold_17:1339885-1340031(+) (11)	NA	Q9FIF7	"Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic"	AT5G59200.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g44299.1	"pentatricopeptide, putative"	Medtr8g029460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221567.1.S1_at	A	A1TS	POPTR_0017s01820	POPTR_0017s01820 (11)	scaffold_17:1335397-1335789(-) (11)	NA	Q54GU0	Putative transporter arsB	AT1G02260.1	Divalent ion symporter 	LOC_Os03g05390.6	"Citrate transporter protein, putative, expressed"	Medtr8g039530.1	Citrate transporter 	GO:0015746|citrate transport	GO:0015137|citrate transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.221570.1.S1_at	A	A1MS	POPTR_0017s01790	POPTR_0017s01790 (10)	scaffold_17:1309650-1310223(-) (10)	NA	Q54GU0	Putative transporter arsB	AT1G02260.1	Divalent ion symporter 	LOC_Os03g05390.13	"Citrate transporter protein, putative, expressed"	Medtr8g039530.1	Citrate transporter 	GO:0015746|citrate transport	GO:0015137|citrate transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.221570.1.S1_x_at	A	A1MS	POPTR_0017s01790	POPTR_0017s01790 (10)	scaffold_17:1309650-1310223(-) (10)	NA	Q54GU0	Putative transporter arsB	AT1G02260.1	Divalent ion symporter 	LOC_Os03g05390.13	"Citrate transporter protein, putative, expressed"	Medtr8g039530.1	Citrate transporter 	GO:0015746|citrate transport	GO:0015137|citrate transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.221571.1.S1_at	A	A1TS	POPTR_0017s01750	POPTR_0017s01750 (11)	scaffold_17:1272988-1274782(-) (11)	NA	NA	NA	AT3G57360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os09g32700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221572.1.S1_at	A	A1TS	POPTR_0017s01720	POPTR_0017s01720 (11)	scaffold_17:1241286-1242837(-) (11)	NA	B3QYP1	Prolyl-tRNA synthetase	AT5G52520.1	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os07g07060.1	"prolyl-tRNA synthetase, putative, expressed"	Medtr3g148790.1	"tRNA synthetase, class II (G, H, P and S) "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.221573.1.S1_at	A	A1TS	POPTR_0017s01710	POPTR_0017s01710 (11)	scaffold_17:1230272-1230442(-) (11)	NA	NA	NA	AT5G52530.3	dentin sialophosphoprotein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221573.1.S1_x_at	A	A1TS	POPTR_0017s01710	POPTR_0017s01710 (11)	scaffold_17:1229918-1230442(-) (11)	NA	NA	NA	AT5G52530.3	dentin sialophosphoprotein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221574.1.S1_at	A	A1TS	POPTR_0017s01700	POPTR_0017s01700 (11)	scaffold_17:1226241-1226464(+) (11)	NA	Q86GL4	Superoxide-generating NADPH oxidase heavy chain subunit B	AT1G01580.1	ferric reduction oxidase 2 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.221575.1.S1_at	A	A1TS	POPTR_0017s01690	POPTR_0017s01690 (11)	scaffold_17:1222774-1223380(+) (11)	NA	Q54F44	Superoxide-generating NADPH oxidase heavy chain subunit C	AT5G23980.1	ferric reduction oxidase 4 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.221576.1.S1_at	A	A1TA	POPTR_0017s01680	POPTR_0017s01680 (11)	scaffold_17:1217985-1218130(-) (11)	NA	O31634	Uncharacterized membrane protein yjcL	AT5G24000.1	Protein of unknown function (DUF819) 	LOC_Os06g01790.1	expressed protein	Medtr1g126520.1	Protein of unknown function DUF819 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221578.1.S1_at	A	A1TS	POPTR_0017s01640	POPTR_0017s01640 (11)	scaffold_17:1175483-1175520(+) (11)//scaffold_96:55280-55317(-) (11)	NA	NA	NA	AT4G25670.2	"unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2). "	LOC_Os06g01770.2	expressed protein	Medtr1g126490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221579.1.S1_x_at	A	A1TS	POPTR_0017s01630	POPTR_0017s01630 (11)	scaffold_17:1170209-1170247(+) (11)	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221582.1.S1_at	A	A1TS	POPTR_0017s01580	POPTR_0017s01580 (9)	scaffold_17:1092836-1093284(+) (11)	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221583.1.S1_at	A	A1TS	POPTR_0017s01610	POPTR_0017s01610 (10)	scaffold_17:1147968-1148196(+) (10)	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.221585.1.S1_at	A	A1TS	POPTR_0017s01500	POPTR_0017s01500 (11)	scaffold_17:1032333-1032723(-) (11)	NA	Q80SY5	Pre-mRNA-splicing factor 38B	AT5G37370.1	PRP38 family protein 	LOC_Os05g08600.2	"splicing factor, putative, expressed"	Medtr5g085030.1	PRP38 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221585.1.S1_s_at	A	A1TS	POPTR_0017s01500	POPTR_0017s01500 (11)	scaffold_17:1032709-1032829(-) (11)	POPTR_0004s07420 (8)	Q80SY5	Pre-mRNA-splicing factor 38B	AT5G37370.1	PRP38 family protein 	LOC_Os05g08600.2	"splicing factor, putative, expressed"	Medtr5g085030.1	PRP38 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221586.1.S1_s_at	A	A1TS	POPTR_0017s01470	POPTR_0017s01470 (11)	scaffold_17:1011474-1012986(-) (11)	NA	NA	NA	AT3G03270.2	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g53320.1	"universal stress protein domain containing protein, putative, expressed"	Medtr5g084990.2	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.221587.1.S1_at	A	A1TS	POPTR_0017s01460	POPTR_0017s01460 (11)	scaffold_17:1009504-1009857(-) (11)	NA	NA	NA	AT4G24975.1	Plant self-incompatibility protein S1 family 	NA	NA	Medtr1g108100.1	Plant self-incompatibility S1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221588.1.S1_at	A	A1MS	POPTR_0017s01450	POPTR_0017s01450 (11)	scaffold_17:1008730-1008939(+) (11)	NA	Q42472	Glutamate decarboxylase 2	AT1G65960.2	glutamate decarboxylase 2 	LOC_Os03g51080.1	"glutamate decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221589.1.S1_at	A	A1TS	POPTR_0017s01420	POPTR_0017s01420 (11)	scaffold_17:995000-995588(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os08g42930.1	"disease resistance protein RGA1, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221589.1.S1_x_at	A	A1TS	POPTR_0017s01420	POPTR_0017s01420 (11)	scaffold_17:995071-995588(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os08g42930.1	"disease resistance protein RGA1, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221590.1.S1_at	A	A1MS	POPTR_0017s01410	POPTR_0017s01410 (11)	scaffold_17:992674-992987(+) (11)	NA	P50218	Isocitrate dehydrogenase [NADP]	AT1G65930.1	cytosolic NADP+-dependent isocitrate dehydrogenase 	LOC_Os01g46610.1	"dehydrogenase, putative, expressed"	Medtr5g084930.1	"Isocitrate dehydrogenase NADP-dependent, plant "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.221591.1.S1_at	A	A1TS	POPTR_0017s01400	POPTR_0017s01400 (10)	scaffold_17:974213-974718(-) (10)	NA	Q9FX31	Homeobox-leucine zipper protein HDG11	AT1G73360.1	homeodomain GLABROUS 11 	LOC_Os06g10600.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.221592.1.S1_at	A	A1TS	POPTR_0017s01280	POPTR_0017s01280 (10)	scaffold_17:891070-891718(-) (10)//scaffold_17:892534-893116(-) (9)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g25740.1	"powdery mildew resistance protein PM3F, putative, expressed"	Medtr3g005920.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.221593.1.S1_at	A	A1MS	POPTR_0017s01290	POPTR_0017s01290 (11)	scaffold_17:897359-897865(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221594.1.S1_at	A	A1TS	POPTR_0017s01280	POPTR_0017s01280 (11)	scaffold_17:891659-893664(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g25740.1	"powdery mildew resistance protein PM3F, putative, expressed"	Medtr3g005920.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.221594.1.S1_s_at	A	A1TS	POPTR_0017s01280	POPTR_0017s01280 (11)	scaffold_17:891641-891902(-) (11)//scaffold_17:893105-893366(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g25740.1	"powdery mildew resistance protein PM3F, putative, expressed"	Medtr3g005920.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.221595.1.S1_at	A	A1TS	POPTR_0017s01270	POPTR_0017s01270 (10)	scaffold_17:890687-890982(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221596.1.S1_at	A	A1TS	POPTR_0017s01250	POPTR_0017s01250 (11)	scaffold_17:874181-876315(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018210.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.221597.1.S1_s_at	A	A1TS	POPTR_0017s01230	POPTR_0017s01230 (9)	scaffold_17:863154-863926(-) (9)	NA	NA	NA	AT4G02270.1	root hair specific 13 	NA	NA	Medtr1g107970.1	Cell surface antigen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221598.1.S1_at	A	A1TS	POPTR_0017s01220	POPTR_0017s01220 (11)	scaffold_17:858524-858948(-) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G48950.1	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr1g126440.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.221599.1.S1_at	A	A1TS	POPTR_0017s01210	POPTR_0017s01210 (11)	scaffold_17:857023-857396(+) (11)	NA	Q3EDL4	Probable serine/threonine-protein kinase At1g01540	AT1G01540.2	Protein kinase superfamily protein 	LOC_Os03g03410.1	"serine/threonine-protein kinase, putative, expressed"	Medtr7g088440.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221599.1.S1_s_at	A	A1TS	POPTR_0017s01210	POPTR_0017s01210 (11)	scaffold_17:856563-857434(+) (11)	NA	Q3EDL4	Probable serine/threonine-protein kinase At1g01540	AT1G01540.2	Protein kinase superfamily protein 	LOC_Os03g03410.1	"serine/threonine-protein kinase, putative, expressed"	Medtr7g088440.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.2216.1.S1_at	A	A1TS	POPTR_0004s03090	POPTR_0004s03090 (10)	scaffold_4:2072216-2072777(+) (10)	NA	NA	NA	AT4G21310.1	Protein of unknown function (DUF1218) 	LOC_Os07g36110.2	expressed protein	Medtr2g103410.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2216.2.S1_at	A	A1TS	POPTR_0011s03410	POPTR_0011s03410 (11)	scaffold_11:3525271-3525809(-) (11)	NA	NA	NA	AT4G21310.1	Protein of unknown function (DUF1218) 	LOC_Os07g36110.2	expressed protein	Medtr2g103410.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221600.1.S1_at	A	A1TS	POPTR_0017s01190	POPTR_0017s01190 (11)	scaffold_14:682156-682674(-) (10)//scaffold_14:852882-853400(+) (10)//scaffold_17:844166-844687(-) (11)	NA	Q9LZ15	Putative F-box/LRR-repeat protein At5g02700	AT5G02700.1	F-box/RNI-like superfamily protein 	NA	NA	Medtr6g006290.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221601.1.S1_at	A	A1TS	POPTR_0017s01180	POPTR_0017s01180 (11)	scaffold_17:840867-841746(-) (11)	NA	Q9LSJ3	Putative F-box/LRR-repeat protein At3g28410	AT3G28410.1	F-box/RNI-like superfamily protein 	NA	NA	Medtr8g021310.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221604.1.S1_at	A	A1TS	POPTR_0017s01070	POPTR_0017s01070 (11)	scaffold_17:779156-779342(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221604.1.S1_x_at	A	A1TS	POPTR_0017s01070	POPTR_0017s01070 (11)	scaffold_17:779156-779342(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221605.1.S1_at	A	A1TS	POPTR_0017s01060	POPTR_0017s01060 (10)	scaffold_17:777170-778463(+) (10)	NA	Q12296	Protein MAM3	AT5G52790.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g03430.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221606.1.S1_at	A	A1TS	POPTR_0017s01050	POPTR_0017s01050 (9)	scaffold_17:767817-769073(-) (10)	NA	Q32PL8	Coiled-coil domain-containing protein 111 homolog	AT5G52800.3	DNA primases 	LOC_Os07g28470.2	"coiled-coil domain-containing protein 111, putative, expressed"	Medtr6g062610.1	"DNA primase, small subunit; Herpesviridae UL52/UL70 DNA primase "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003896|DNA primase activity	NA
PtpAffx.221607.1.S1_at	A	A1TS	POPTR_0017s01040	POPTR_0017s01040 (11)	scaffold_17:764996-765545(+) (11)	NA	Q84K34	E3 ubiquitin-protein ligase SINA-like 10	AT5G37930.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os01g03290.1	seven in absentia protein family domain containing protein	AC235662_15.1	TRAF-like AC235662.1 70113-67206 E EGN_Mt090430 200	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.221608.1.S1_at	A	A2TS	POPTR_0017s01030	POPTR_0017s01030 (11)//POPTR_0988s00205 (10)	scaffold_17:758298-758626(+) (11)//scaffold_988:8065-8373(-) (10)	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221609.1.S1_s_at	A	A2TS	POPTR_0017s01010	POPTR_0017s01010 (11)//POPTR_0017s01020 (11)	scaffold_17:748246-748627(-) (11)//scaffold_17:753914-754295(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221611.1.S1_at	A	A1MS	POPTR_0017s01000	POPTR_0017s01000 (9)	scaffold_17:743196-743567(+) (9)	NA	Q0WMN5	Uncharacterized protein At3g49135	AT5G24060.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g34130.1	expressed protein	Medtr6g062650.1	"binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221612.1.S1_at	A	A1TS	POPTR_0017s00990	POPTR_0017s00990 (11)	scaffold_17:736096-737509(-) (11)	NA	Q8LG95	Pentatricopeptide repeat-containing protein At4g21190	AT4G21190.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g55290.2	"PPR repeat domain containing protein, putative, expressed"	Medtr5g012280.1	"pentatricopeptide repeat-containing protein {Ara, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221613.1.S1_at	A	A1TS	POPTR_0017s00980	POPTR_0017s00980 (11)	scaffold_17:734792-734905(+) (11)	NA	Q8VHE0	Translocation protein SEC63 homolog	AT1G79940.3	DnaJ / Sec63 Brl domains-containing protein 	LOC_Os04g24180.2	"heat shock protein binding protein, putative, expressed"	Medtr2g052130.1	"Heat shock protein DnaJ, N-terminal; Sec63 "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.221613.1.S1_s_at	A	A1TS	POPTR_0017s00980	POPTR_0017s00980 (11)	scaffold_17:734331-734856(+) (11)	NA	Q8VHE0	Translocation protein SEC63 homolog	AT1G79940.3	DnaJ / Sec63 Brl domains-containing protein 	LOC_Os04g24180.2	"heat shock protein binding protein, putative, expressed"	Medtr2g052130.1	"Heat shock protein DnaJ, N-terminal; Sec63 "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.221614.1.S1_at	A	A1TS	POPTR_0017s00960	POPTR_0017s00960 (11)	scaffold_17:706248-706920(-) (11)	NA	Q9FLX8	Probable WRKY transcription factor 27	AT5G52830.1	WRKY DNA-binding protein 27 	LOC_Os02g16540.1	"OsWRKY39v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g126350.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.221615.1.S1_at	A	A1TS	POPTR_0017s00940	POPTR_0017s00940 (11)	scaffold_17:692555-692789(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221616.1.S1_at	A	A1TS	POPTR_0017s00930	POPTR_0017s00930 (11)	scaffold_17:674183-674444(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221616.1.S1_s_at	A	A3TS	POPTR_0017s00900	POPTR_0017s00900 (11)//POPTR_0017s00940 (11)//POPTR_0017s00930 (11)	scaffold_17:663629-663903(+) (11)//scaffold_17:674350-674627(+) (11)//scaffold_17:692860-693134(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221617.1.S1_at	A	A1TS	POPTR_0017s00920	POPTR_0017s00920 (11)	scaffold_17:671820-672439(-) (11)	NA	Q0JC27	Protein NLP2	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os11g16290.2	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221617.1.S1_s_at	A	A2TS	POPTR_0017s00920	POPTR_0017s00920 (11)//POPTR_0017s00890 (10)	scaffold_17:659342-659845(-) (11)//scaffold_17:671840-672336(-) (11)	NA	Q0JC27	Protein NLP2	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os11g16290.2	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221618.1.S1_at	A	A1TS	POPTR_0017s00910	POPTR_0017s00910 (11)	scaffold_17:669795-670154(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221619.1.S1_at	A	A1TS	POPTR_0017s00900	POPTR_0017s00900 (11)	scaffold_17:663340-663558(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221620.1.S1_at	A	A1MS	POPTR_0017s00890	POPTR_0017s00890 (9)	scaffold_17:658716-659820(-) (9)	NA	Q9M1B0	Protein NLP9	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os10g08970.1	"transposon protein, putative, unclassified"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0003677|DNA binding	NA
PtpAffx.221621.1.S1_at	A	A1TS	POPTR_0017s00880	POPTR_0017s00880 (11)	scaffold_17:656873-657208(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g50640.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.221625.1.S1_s_at	A	A3TS	POPTR_0019s09590	POPTR_0019s09590 (11)//POPTR_0019s09610 (11)//POPTR_0019s09600 (11)	scaffold_19:11191308-11191826(+) (11)//scaffold_19:11196335-11196853(+) (11)//scaffold_19:11204502-11205020(+) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT5G16340.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084090.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.221626.1.S1_x_at	A	A1MS	POPTR_0039s00320	POPTR_0039s00320 (11)	scaffold_39:117114-117345(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g093760.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.221634.1.S1_at	A	A2TS	POPTR_0019s04590	POPTR_0019s04590 (11)//POPTR_0198s00220 (11)	scaffold_19:4779232-4779938(-) (11)//scaffold_198:41658-42361(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT2G39060.1	Nodulin MtN3 family protein 	LOC_Os02g30910.1	"nodulin MtN3 family protein, putative, expressed"	Medtr5g099910.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221635.1.S1_s_at	A	A1TS	POPTR_0012s11440	POPTR_0012s11440 (11)	scaffold_12:11878204-11879007(-) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr2g009030.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.221637.1.S1_at	A	A1TS	POPTR_0656s00195	POPTR_0656s00195 (11)	scaffold_17:12122788-12122885(+) (9)//scaffold_656:7646-7926(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221637.1.S1_s_at	A	A1TS	POPTR_0656s00195	POPTR_0656s00195 (11)	scaffold_17:12122689-12123182(+) (9)//scaffold_19:969469-970060(+) (10)//scaffold_656:7730-8223(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221640.1.S1_at	A	A1TS	POPTR_0009s00450	POPTR_0009s00450 (11)	scaffold_9:280442-282471(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221641.1.S1_at	A	A1MS	POPTR_0004s04910	POPTR_0004s04910 (11)	scaffold_4:3679365-3679770(-) (11)	NA	Q5R9T9	Guanylate-binding protein 6	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	GO:0006955|immune response	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.221642.1.S1_at	A	A1MA	POPTR_0012s11880	POPTR_0012s11880 (11)	scaffold_12:12238482-12238633(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221643.1.S1_at	A	A1TS	POPTR_0242s00210	POPTR_0242s00210 (11)	scaffold_242:10254-11388(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221644.1.S1_at	A	A1TS	POPTR_0242s00200	POPTR_0242s00200 (11)	scaffold_242:1953-2494(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221648.1.S1_at	A	A1TS	POPTR_0008s00950	POPTR_0008s00950 (11)	scaffold_8:448611-448839(+) (11)	NA	Q54VZ8	Exocyst complex component 8	AT5G49830.1	exocyst complex component 84B 	LOC_Os07g10110.1	expressed protein	Medtr4g023160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221648.1.S1_x_at	A	A1TS	POPTR_0008s00950	POPTR_0008s00950 (11)	scaffold_8:448518-448839(+) (11)	NA	Q54VZ8	Exocyst complex component 8	AT5G49830.1	exocyst complex component 84B 	LOC_Os07g10110.1	expressed protein	Medtr4g023160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221649.1.S1_at	A	A1TS	POPTR_0017s08980	POPTR_0017s08980 (11)	scaffold_17:7634032-7634319(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221650.1.S1_at	A	A1TS	POPTR_0013s11940	POPTR_0013s11940 (11)	scaffold_13:12567957-12569170(-) (11)	NA	Q40863	Embryogenesis-associated protein EMB8	AT1G34340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g65070.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g122270.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221653.1.S1_at	A	A1MS	POPTR_0003s01850	POPTR_0003s01850 (11)	scaffold_3:1712378-1712448(-) (11)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.2	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.1	"ATPase, E1-E2 type "	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.221653.1.S1_s_at	A	A1MS	POPTR_0003s01850	POPTR_0003s01850 (10)	scaffold_3:1712441-1713652(-) (10)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.2	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.1	"ATPase, E1-E2 type "	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.221654.1.S1_s_at	A	A2TS	POPTR_0004s01900	POPTR_0004s01900 (11)//POPTR_0004s01910 (11)	scaffold_4:1169611-1170574(-) (11)//scaffold_4:1180003-1180967(-) (11)	NA	O80690	Beta-glucosidase 46	AT1G61820.1	beta glucosidase 46 	LOC_Os04g43410.1	"Os4bglu18 - monolignol beta-glucoside homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.221656.1.S1_at	A	A1TA	POPTR_0015s04760	POPTR_0015s04760 (10)	scaffold_15:4968150-4968717(-) (11)	NA	Q6DR24	Uncharacterized protein At3g17950	AT3G17950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g14530.1	expressed protein	Medtr6g083290.1	"Uncharacterized protein At3g17950, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221657.1.S1_at	A	A1TS	POPTR_0005s28390	POPTR_0005s28390 (11)	scaffold_5:25723211-25723505(-) (11)	NA	Q69V23	Probable cellulose synthase A catalytic subunit 3 [UDP-forming]	AT2G25540.1	cellulose synthase 10 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr3g009020.1	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221657.1.S1_x_at	A	A1TS	POPTR_0005s28390	POPTR_0005s28390 (11)	scaffold_5:25723265-25723516(-) (11)	NA	Q69V23	Probable cellulose synthase A catalytic subunit 3 [UDP-forming]	AT2G25540.1	cellulose synthase 10 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr3g009020.1	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221668.1.S1_at	A	A1TS	POPTR_0005s13380	POPTR_0005s13380 (10)	scaffold_5:10537924-10538113(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221669.1.S1_s_at	A	A2TS	POPTR_0005s13010	POPTR_0005s13010 (11)//POPTR_0005s13370 (11)	scaffold_5:9839502-9839540(+) (11)//scaffold_5:10531687-10531725(+) (11)//scaffold_5:10563193-10563231(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221670.1.S1_at	A	A1MS	POPTR_0014s00370	POPTR_0014s00370 (11)	scaffold_14:193257-193297(+) (11)	NA	P0C8Y0	Camelliol C synthase	AT1G78955.1	camelliol C synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.221671.1.S1_at	A	A1TS	POPTR_0633s00210	POPTR_0633s00210 (11)	scaffold_13:2380621-2381121(+) (11)//scaffold_633:11586-11995(+) (11)	NA	NA	NA	AT4G29250.1	HXXXD-type acyl-transferase family protein 	LOC_Os03g53360.1	"transferase family protein, putative, expressed"	Medtr7g140830.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221672.1.S1_at	A	A1TS	POPTR_0011s16620	POPTR_0011s16620 (11)	scaffold_11:18435872-18436035(+) (11)	NA	Q6K5Q0	Putative germin-like protein 2-1	AT5G39160.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr6g005250.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.221674.1.S1_s_at	A	A2TS	POPTR_0005s13340	POPTR_0005s13340 (11)//POPTR_0005s18750 (11)	scaffold_5:10497989-10498024(-) (11)//scaffold_5:17042536-17042571(+) (11)	NA	O22187	Probable receptor-like protein kinase At2g23200	AT2G23200.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221677.1.S1_x_at	A	A1TS	POPTR_0001s09020	POPTR_0001s09020 (9)	scaffold_1:6893969-6894281(+) (9)	NA	Q10PV9	DEAD-box ATP-dependent RNA helicase 47B	AT1G12770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g12000.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.221678.1.S1_at	A	A1TS	POPTR_0017s09500	POPTR_0017s09500 (11)	scaffold_17:8117310-8117467(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g14940.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.221679.1.S1_s_at	A	A1TS	POPTR_0002s14290	POPTR_0002s14290 (11)	scaffold_2:10572453-10572904(+) (11)	NA	Q08062	"Malate dehydrogenase, cytoplasmic"	AT1G04410.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr1g042850.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.221682.1.S1_at	A	A1TS	POPTR_0011s08010	POPTR_0011s08010 (11)	scaffold_11:9034180-9034786(+) (11)	POPTR_0011s08000 (7)	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os08g10330.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr2g090600.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.221682.1.S1_x_at	A	A1TS	POPTR_0011s08010	POPTR_0011s08010 (11)	scaffold_11:9034182-9036055(+) (11)	POPTR_0011s06420 (6)//POPTR_0011s08000 (6)	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os08g10330.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr2g090600.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.221683.1.S1_x_at	A	A1TS	POPTR_0003s00830	POPTR_0003s00830 (11)	scaffold_3:670590-671295(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221684.1.S1_at	A	A1TS	POPTR_0015s07130	POPTR_0015s07130 (10)	scaffold_1490:430-819(-) (11)//scaffold_15:8261764-8262153(+) (11)	POPTR_1490s00200 (8)	O04300	"Alpha-1,4-glucan-protein synthase [UDP-forming]"	AT3G08900.1	reversibly glycosylated polypeptide 3 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
PtpAffx.221687.1.S1_s_at	A	A1MS	POPTR_0016s06560	POPTR_0016s06560 (11)	scaffold_16:4400883-4401398(+) (11)	NA	Q9FG16	Pentatricopeptide repeat-containing protein At5g06540	AT5G06540.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g08120.1	"pentatricopeptide, putative, expressed"	Medtr3g069190.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221688.1.S1_at	A	A1TS	POPTR_0003s10760	POPTR_0003s10760 (11)	scaffold_3:11654703-11655439(+) (11)	NA	NA	NA	AT1G76520.2	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	Medtr5g024900.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.221688.1.S1_s_at	A	A1TS	POPTR_0003s10760	POPTR_0003s10760 (11)	scaffold_3:11654958-11655985(+) (11)	NA	NA	NA	AT1G76520.2	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	Medtr5g024900.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.221689.1.S1_at	A	A1TS	POPTR_0007s07390	POPTR_0007s07390 (11)	scaffold_7:5726364-5726969(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221690.1.S1_x_at	A	A1TS	POPTR_0007s07380	POPTR_0007s07380 (11)	scaffold_7:5725346-5725618(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221693.1.S1_at	A	A1TS	POPTR_0001s05130	POPTR_0001s05130 (9)	scaffold_1:3945520-3945553(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221693.1.S1_x_at	A	A1TS	POPTR_0001s05130	POPTR_0001s05130 (10)	scaffold_1:3945521-3945670(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221694.1.S1_at	A	A1MS	POPTR_0003s18410	POPTR_0003s18410 (9)	scaffold_3:17499691-17500222(+) (9)	NA	Q9LMT9	Putative wall-associated receptor kinase-like 13	AT1G17910.1	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_3.1	Tyrosine protein kinase AC147501.9 8841-5950 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221695.1.S1_s_at	A	A1TS	POPTR_0002s03510	POPTR_0002s03510 (11)	scaffold_2:2177792-2178154(+) (11)	NA	Q43814	"Ornithine carbamoyltransferase, chloroplastic"	AT1G75330.1	ornithine carbamoyltransferase 	LOC_Os02g47590.1	"ornithine carbamoyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221697.1.S1_at	A	A1TS	POPTR_0088s00230	POPTR_0088s00230 (11)	scaffold_88:47627-48565(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221698.1.S1_x_at	A	A1TS	POPTR_0088s00200	POPTR_0088s00200 (9)	scaffold_15:12822364-12822920(-) (11)//scaffold_88:5622-6097(+) (9)	POPTR_0015s12600 (8)	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221699.1.S1_at	A	A1TS	POPTR_0001s30910	POPTR_0001s30910 (11)	scaffold_1:29326232-29326523(+) (11)	NA	Q2N5X0	Kynurenine formamidase	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221700.1.S1_at	A	A1TS	POPTR_0002s00910	POPTR_0002s00910 (11)	scaffold_2:423689-424235(-) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os12g17900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.221701.1.S1_x_at	A	A1TS	POPTR_1233s00200	POPTR_1233s00200 (10)	scaffold_1233:2256-2430(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.2	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g42700.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g009400.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.221704.1.S1_s_at	A	A1TS	POPTR_0010s19500	POPTR_0010s19500 (11)	scaffold_10:17383187-17384389(+) (11)	NA	Q9Y2K9	Syntaxin-binding protein 5-like	AT5G05570.2	transducin family protein / WD-40 repeat family protein 	LOC_Os07g49300.1	expressed protein	Medtr5g090270.1	Synaptobrevin; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221709.1.S1_at	A	A1TS	POPTR_0019s14950	POPTR_0019s14950 (11)	scaffold_19:15588822-15589245(+) (11)	NA	P22195	Cationic peroxidase 1	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os01g10850.1	"peroxidase precursor, putative, expressed"	Medtr5g082700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221712.1.S1_at	A	A1MS	POPTR_0002s00670	POPTR_0002s00670 (9)	scaffold_2:297344-297955(-) (9)	NA	Q4R7R1	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0006694|steroid biosynthetic process||GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity	NA
PtpAffx.221714.1.S1_s_at	A	A2TS	POPTR_0014s18950	POPTR_0014s18950 (11)//POPTR_0014s18970 (11)	scaffold_14:16559338-16559742(-) (11)//scaffold_14:16589185-16589589(+) (11)	POPTR_0002s24980 (7)	Q9SRT3	Probable xyloglucan glycosyltransferase 6	AT3G07330.1	Cellulose-synthase-like C6 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr8g012660.1	"Glycosyl transferase, family 2; Inorganic pyrophosphatase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221716.1.S1_at	A	A1MS	POPTR_0112s00230	POPTR_0112s00230 (11)	scaffold_112:43420-44227(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.221717.1.S1_at	A	A1TS	POPTR_0112s00230	POPTR_0112s00230 (11)	scaffold_112:45470-45535(+) (11)//scaffold_3:17520493-17520553(+) (10)//scaffold_3:17546305-17546365(+) (10)//scaffold_75:30202-30262(+) (10)//scaffold_75:79963-80023(+) (10)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.221725.1.S1_at	A	A1TS	POPTR_0010s03000	POPTR_0010s03000 (11)	scaffold_10:3507015-3507575(+) (11)	POPTR_0008s20380 (6)	Q9M8J3	Protein FAR1-RELATED SEQUENCE 7	AT3G06250.1	FAR1-related sequence 7 	LOC_Os12g12380.3	"transposon protein, putative, unclassified, expressed"	Medtr2g026200.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.221726.1.S1_s_at	A	A1TS	POPTR_0016s03140	POPTR_0016s03140 (11)	scaffold_16:1587689-1588610(-) (11)	NA	Q08891	Fatty acyl-CoA reductase 2	AT3G11980.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os03g07140.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221727.1.S1_at	A	A2TS	POPTR_0019s03070	POPTR_2061s00200 (11)//POPTR_0019s03070 (11)	scaffold_19:3089473-3089886(+) (11)//scaffold_2061:2716-3131(-) (11)	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.221728.1.S1_at	A	A1TS	POPTR_0524s00200	POPTR_0524s00200 (10)	scaffold_4:623431-626476(+) (11)//scaffold_524:2176-2364(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221731.1.S1_s_at	A	A1TS	POPTR_0015s12650	POPTR_0015s12650 (11)	scaffold_15:12887006-12887139(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221732.1.S1_at	A	A1TS	POPTR_0007s07330	POPTR_0007s07330 (9)	scaffold_7:5685529-5685627(+) (9)	NA	Q9FJR1	Peroxidase 65	AT5G47000.1	Peroxidase superfamily protein 	LOC_Os02g50770.1	"peroxidase precursor, putative, expressed"	Medtr6g008740.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.221733.1.S1_s_at	A	A1TS	POPTR_0003s08400	POPTR_0003s08400 (11)	scaffold_3:9820501-9820541(-) (11)	NA	NA	NA	AT1G32730.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF702 (InterPro:IPR007818); Has 120 Blast hits to 118 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 63; Fungi - 4; Plants - 33; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os08g03550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221736.1.S1_at	A	A2TS	POPTR_0001s39050	POPTR_0001s39080 (11)//POPTR_0001s39050 (11)	scaffold_1:38287286-38287739(-) (11)//scaffold_1:38314845-38315268(-) (11)	NA	NA	NA	AT1G17030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19000.1	expressed protein	AC235677_33.1	hypothetical protein AC235677.1 140826-144182 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221737.1.S1_s_at	A	A2TS	POPTR_0004s07560	POPTR_0004s07560 (11)//POPTR_0004s07570 (10)	scaffold_4:6209802-6210438(-) (11)//scaffold_4:6222993-6223628(-) (10)	NA	Q00416	Helicase SEN1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g51090.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr3g086370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221743.1.S1_s_at	A	A1TS	POPTR_0002s23820	POPTR_0002s23820 (11)	scaffold_2:21301422-21301963(-) (11)	NA	Q9S7F4	Putative pentatricopeptide repeat-containing protein At2g01510	AT3G02010.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g01115.1	"pentatricopeptide, putative"	Medtr7g096950.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221745.1.S1_s_at	A	A1TS	POPTR_0002s23840	POPTR_0002s23840 (11)	scaffold_2:21311520-21313150(-) (11)	NA	Q55750	Transcription-repair-coupling factor	AT3G02060.2	"DEAD/DEAH box helicase, putative "	LOC_Os11g32880.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g099370.1	"Haem peroxidase, plant/fungal/bacterial; ATP-requiring DNA helicase RecQ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003700|transcription factor activity||GO:0003684|damaged DNA binding	NA
PtpAffx.221755.1.S1_at	A	A1TS	POPTR_0008s11400	POPTR_0008s11400 (11)	scaffold_8:7242317-7242398(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221755.1.S1_x_at	A	A1TS	POPTR_0008s11400	POPTR_0008s11400 (11)	scaffold_8:7242277-7242398(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221756.1.S1_at	A	A1TS	POPTR_0419s00210	POPTR_0419s00210 (10)	scaffold_1:38704222-38704309(-) (11)//scaffold_419:16306-16384(-) (10)	NA	NA	NA	AT3G14830.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g091120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221757.1.S1_at	A	A1TS	POPTR_0001s39500	POPTR_0001s39500 (11)	scaffold_1:38697940-38698965(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g136210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221759.1.S1_at	A	A1MS	POPTR_1031s00210	POPTR_1031s00210 (10)	scaffold_1031:4843-5745(+) (10)	POPTR_0005s10380 (7)	Q8S2T1	Dehydrodolichyl diphosphate synthase 6	AT2G17570.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os06g07120.1	"dehydrodolichyl diphosphate synthase, putative, expressed"	Medtr8g087990.1	Di-trans-poly-cis-decaprenylcistransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22176.1.A1_a_at	A	A1MS	POPTR_0004s22980	POPTR_0004s22980 (11)	scaffold_4:21811030-21811232(-) (11)//scaffold_433:330-532(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.22176.1.A1_at	A	A1MS	POPTR_0004s22980	POPTR_0004s22980 (11)	scaffold_4:21810838-21811244(-) (11)//scaffold_433:318-724(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.221760.1.S1_at	A	A1TS	POPTR_1735s00200	POPTR_1735s00200 (11)	scaffold_1735:2861-3545(+) (11)	NA	NA	NA	AT5G22140.2	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os02g05680.1	"apoptosis-inducing factor 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221761.1.S1_at	A	A3TS	POPTR_0012s01980	POPTR_0146s00220 (11)//POPTR_0012s01980 (11)//POPTR_0012s01920 (9)	scaffold_12:1508203-1510429(-) (9)//scaffold_12:1595923-1598321(-) (11)//scaffold_146:11462-13464(+) (11)	NA	Q8VD57	Vesicle transport protein SFT2B	AT5G24170.1	Got1/Sft2-like vescicle transport protein family 	LOC_Os01g11980.1	"SFT2, putative, expressed"	Medtr6g070860.1	SFT2-like 	GO:0016192|vesicle-mediated transport	NA	NA
PtpAffx.221762.1.S1_at	A	A1MS	POPTR_0146s00200	POPTR_0146s00200 (11)	scaffold_146:5368-5454(-) (11)	POPTR_0012s02000 (8)	Q12874	Splicing factor 3A subunit 3	AT5G06160.1	splicing factor-related 	LOC_Os03g50850.1	"ZOS3-17 - C2H2 zinc finger protein, expressed"	Medtr3g124240.1	"Zinc finger, C2H2-type matrin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221762.1.S1_s_at	A	A2TS	POPTR_0012s02000	POPTR_0012s02000 (11)//POPTR_0146s00200 (11)	scaffold_12:1603065-1603924(+) (11)//scaffold_146:5442-6300(-) (11)	NA	Q12874	Splicing factor 3A subunit 3	AT5G06160.1	splicing factor-related 	LOC_Os03g50850.1	"ZOS3-17 - C2H2 zinc finger protein, expressed"	Medtr3g124240.1	"Zinc finger, C2H2-type matrin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221763.1.S1_at	A	A1TS	POPTR_0012s02020	POPTR_0012s02020 (11)	scaffold_12:1627877-1628960(+) (11)	NA	NA	NA	AT5G53450.1	OBP3-responsive gene 1 	LOC_Os01g46720.1	expressed protein	Medtr3g124180.1	"Proteinase inhibitor I4, serpin; Protein kinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221766.1.S1_at	A	A1MS	POPTR_0006s29480	POPTR_0006s29480 (9)	scaffold_6:26835480-26837284(+) (9)	POPTR_0006s29530 (6)	Q8GWT4	Protein arginine N-methyltransferase 5	AT4G31120.2	SHK1 binding protein 1 	LOC_Os02g04660.1	"arginine N-methyltransferase 5, putative, expressed"	Medtr3g133650.1	Skb1 methyltransferase 	NA	GO:0008168|methyltransferase activity	GO:0005737|cytoplasm
PtpAffx.221767.1.S1_at	A	A1TS	POPTR_0006s29470	POPTR_0006s29470 (11)	scaffold_6:26826684-26827316(-) (11)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT4G31140.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g04670.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221767.1.S1_x_at	A	A1TS	POPTR_0006s29470	POPTR_0006s29470 (11)	scaffold_6:26826684-26827316(-) (11)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT4G31140.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g04670.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221769.1.S1_at	A	A1TS	POPTR_0008s01420	POPTR_0008s01420 (11)	scaffold_8:687633-687841(-) (11)	NA	NA	NA	AT3G47580.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05960.1	"receptor kinase, putative, expressed"	Medtr5g089820.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22177.2.A1_at	A	A1TS	POPTR_0013s13870	POPTR_0013s13870 (11)	scaffold_13:14208314-14208819(-) (11)	NA	P34913	Epoxide hydrolase 2	AT4G02340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22177.3.A1_a_at	A	A1TS	POPTR_0013s13870	POPTR_0013s13870 (11)	scaffold_13:14208987-14209340(-) (11)//scaffold_481:14989-15342(-) (11)	NA	P34913	Epoxide hydrolase 2	AT4G02340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221770.1.S1_at	A	A1MS	POPTR_0016s09910	POPTR_0016s09910 (11)	scaffold_16:7993954-7994085(-) (11)	NA	P74741	Bifunctional purine biosynthesis protein purH	AT2G35040.1	AICARFT/IMPCHase bienzyme family protein 	LOC_Os08g10570.2	"bifunctional purine biosynthesis protein purH, putative, expressed"	Medtr5g103430.1	AICARFT/IMPCHase bienzyme; MGS-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221771.1.S1_x_at	A	A1MA	POPTR_0016s09920	POPTR_0016s09920 (11)	scaffold_16:8001536-8001954(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221772.1.S1_x_at	A	A2MS	POPTR_0017s09130	POPTR_0017s09130 (11)//POPTR_0017s09110 (10)	scaffold_17:7783002-7783138(+) (10)//scaffold_17:7801843-7801979(+) (11)	NA	Q9LPZ9	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13	AT1G11350.1	S-domain-1 13 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr5g005700.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221773.1.S1_s_at	A	A1TS	POPTR_0003s01280	POPTR_0003s01280 (11)	scaffold_3:1154734-1155667(-) (11)	NA	Q6P5E4	UDP-glucose:glycoprotein glucosyltransferase 1	AT1G71220.2	"UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups "	LOC_Os02g44510.1	"UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed"	Medtr2g007060.1	UDP-glucose:Glycoprotein Glucosyltransferase 	GO:0006486|protein amino acid glycosylation	GO:0003980|UDP-glucose:glycoprotein glucosyltransferase activity	NA
PtpAffx.221774.1.S1_at	A	A1TS	POPTR_0017s13750	POPTR_0017s13750 (11)	scaffold_17:13915368-13916484(+) (11)//scaffold_43:74469-75560(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221775.1.S1_x_at	A	A2TS	POPTR_0017s13770	POPTR_0017s13770 (11)//POPTR_0035s00410 (10)	scaffold_17:13935859-13936309(+) (11)//scaffold_35:248104-248554(-) (11)	POPTR_0017s14590 (7)	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.221776.1.S1_s_at	A	A1TS	POPTR_0002s08510	POPTR_0002s08510 (11)	scaffold_2:5952284-5952864(-) (11)	NA	Q4QY64	ATPase family AAA domain-containing protein 5	AT1G77620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g15580.1	"AT hook motif family protein, expressed"	Medtr1g037360.1	"nucleoside-triphosphatase/ nucleotide binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221779.1.S1_s_at	A	A2TS	POPTR_0002s04670	POPTR_0005s23890 (11)//POPTR_0002s04670 (11)	scaffold_2:2913001-2913118(-) (11)//scaffold_5:22603192-22603309(+) (11)	NA	Q9AR19	Histone acetyltransferase GCN5	AT3G54610.1	histone acetyltransferase of the GNAT family 1 	LOC_Os10g28040.1	"histone acetyltransferase GCN5, putative, expressed"	Medtr8g074500.1	GCN5-related N-acetyltransferase; Bromodomain 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.221780.1.S1_s_at	A	A1TS	POPTR_0002s04670	POPTR_0002s04670 (11)	scaffold_2:2915089-2915349(-) (11)	NA	Q9AR19	Histone acetyltransferase GCN5	AT3G54610.1	histone acetyltransferase of the GNAT family 1 	LOC_Os10g28040.1	"histone acetyltransferase GCN5, putative, expressed"	Medtr8g074500.1	GCN5-related N-acetyltransferase; Bromodomain 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.221782.1.S1_at	A	A1TS	POPTR_0008s16050	POPTR_0008s16050 (11)	scaffold_8:10703935-10706747(+) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g45750.1	"protein kinase domain containing protein, expressed"	Medtr5g045500.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221782.1.S1_s_at	A	A1TS	POPTR_0008s16050	POPTR_0008s16050 (11)	scaffold_8:10704009-10707135(+) (11)	POPTR_0008s16040 (8)	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g45750.1	"protein kinase domain containing protein, expressed"	Medtr5g045500.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221784.1.S1_at	A	A1TS	POPTR_0001s07020	POPTR_0001s07020 (10)	scaffold_1:5358579-5359076(+) (11)	NA	Q0JNR2	Cysteine proteinase inhibitor 12	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.221787.1.S1_at	A	A1TS	POPTR_0001s18530	POPTR_0001s18530 (11)	scaffold_1:15587392-15588351(+) (11)//scaffold_1:44099547-44099771(+) (10)//scaffold_13:5263528-5263752(-) (10)	POPTR_0013s06630 (8)	NA	NA	AT2G35040.1	AICARFT/IMPCHase bienzyme family protein 	LOC_Os08g10570.1	"bifunctional purine biosynthesis protein purH, putative, expressed"	Medtr5g103430.1	AICARFT/IMPCHase bienzyme; MGS-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221791.1.S1_at	A	A1TS	POPTR_0013s11370	POPTR_0013s11370 (11)	scaffold_13:12047030-12047174(+) (11)	NA	P48769	Deoxycytidine kinase	AT1G72040.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g65350.1	"deoxynucleoside kinase family, putative, expressed"	Medtr3g012840.1	Deoxynucleoside kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0005524|ATP binding||GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.221791.1.S1_s_at	A	A2TS	POPTR_0013s11370	POPTR_0013s11370 (11)//POPTR_0019s11100 (11)	scaffold_13:12046517-12047124(+) (11)//scaffold_19:12498449-12499081(+) (11)	NA	P48769	Deoxycytidine kinase	AT1G72040.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g65350.1	"deoxynucleoside kinase family, putative, expressed"	Medtr3g012840.1	Deoxynucleoside kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0005524|ATP binding||GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.221792.1.S1_at	A	A1TS	POPTR_0001s43360	POPTR_0001s43360 (10)	scaffold_1:43399732-43400352(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221793.1.S1_s_at	A	A1TS	POPTR_0014s14390	POPTR_0014s14390 (11)	scaffold_14:10550760-10552057(+) (11)	NA	Q9FFD0	Putative auxin efflux carrier component 8	AT5G16530.1	Auxin efflux carrier family protein 	LOC_Os01g69070.1	"auxin efflux carrier component, putative, expressed"	Medtr7g089430.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.221794.1.S1_at	A	A1TS	POPTR_0163s00220	POPTR_0163s00220 (11)	scaffold_163:25806-26252(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03500.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221798.1.S1_at	A	A1TS	POPTR_0008s15500	POPTR_0008s15500 (11)	scaffold_8:10299479-10300312(+) (11)	NA	NA	NA	AT3G22620.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g57980.1	"LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g007080.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221799.1.S1_at	A	A1TS	POPTR_0008s15490	POPTR_0008s15490 (11)	scaffold_8:10296139-10297147(-) (11)	NA	Q9ZQI8	Non-specific lipid-transfer protein-like protein At2g13820	AT3G22600.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g07870.1	"LTPL77 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr5g007090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221800.1.S1_at	A	A1TS	POPTR_0008s15480	POPTR_0008s15480 (11)	scaffold_8:10293073-10293898(+) (11)	NA	Q5ZLM0	Parafibromin	AT3G22590.1	PLANT HOMOLOGOUS TO PARAFIBROMIN 	LOC_Os03g46190.2	"parafibromin, putative, expressed"	Medtr5g007100.1	"RNA pol II accessory factor, Cdc73 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221801.1.S1_at	A	A1TS	POPTR_0008s15470	POPTR_0008s15470 (11)	scaffold_8:10292121-10292308(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221805.1.S1_s_at	A	A1TS	POPTR_0017s08250	POPTR_0017s08250 (11)	scaffold_17:6722831-6723220(-) (11)	NA	Q9SVQ0	Ethylene-responsive transcription factor ERF062	AT4G13620.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr1g111860.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.221807.1.S1_s_at	A	A3TS	POPTR_0014s13220	POPTR_1388s00200 (11)//POPTR_1388s00210 (11)//POPTR_0014s13220 (11)	scaffold_1388:3-155(+) (11)//scaffold_1388:266-4172(+) (11)//scaffold_14:9752196-9752348(+) (11)	NA	P93050	Probable LRR receptor-like serine/threonine-protein kinase RKF3	AT2G48010.1	receptor-like kinase in in flowers 3 	LOC_Os01g28730.1	"protein kinase domain containing protein, expressed"	Medtr2g006980.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221808.1.S1_s_at	A	A2TS	POPTR_0014s13220	POPTR_1388s00210 (11)//POPTR_0014s13220 (11)	scaffold_1388:2678-3021(+) (11)//scaffold_14:9750743-9751086(+) (11)	NA	P93050	Probable LRR receptor-like serine/threonine-protein kinase RKF3	AT2G48010.1	receptor-like kinase in in flowers 3 	LOC_Os01g28730.1	"protein kinase domain containing protein, expressed"	Medtr2g006980.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221810.1.S1_at	A	A1TS	POPTR_0016s11530	POPTR_0016s11530 (11)	scaffold_16:10745210-10745425(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221810.1.S1_x_at	A	A1TS	POPTR_0016s11530	POPTR_0016s11530 (11)	scaffold_16:10745212-10745696(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221811.1.S1_at	A	A1TS	POPTR_0016s09940	POPTR_0016s09940 (11)	scaffold_16:8028632-8029181(-) (11)	NA	NA	NA	AT3G15940.2	UDP-Glycosyltransferase superfamily protein 	NA	NA	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221811.1.S1_x_at	A	A1TS	POPTR_0016s09940	POPTR_0016s09940 (11)	scaffold_16:8028466-8029181(-) (11)	NA	NA	NA	AT3G15940.2	UDP-Glycosyltransferase superfamily protein 	NA	NA	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221813.1.S1_at	A	A3TS	POPTR_0019s03890	POPTR_0019s03890 (10)//POPTR_0019s03920 (10)//POPTR_0019s03940 (9)	scaffold_19:3945664-3945878(+) (11)//scaffold_19:3978120-3978334(+) (9)//scaffold_19:3999764-3999978(+) (11)//scaffold_19:4018078-4018292(+) (9)	POPTR_0019s03900 (8)	Q9FYZ9	Benzoate carboxyl methyltransferase	AT5G04370.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g13350.1	"SAM dependent carboxyl methyltransferase, putative, expressed"	Medtr8g092820.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.221815.1.S1_at	A	A1TS	POPTR_0003s12950	POPTR_0003s12950 (10)	scaffold_3:13369024-13369373(-) (10)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT5G52430.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g57610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221816.1.S1_s_at	A	A2TS	POPTR_0101s00210	POPTR_0101s00260 (11)//POPTR_0101s00210 (11)	scaffold_101:10144-10387(-) (11)//scaffold_101:44503-44746(-) (11)	NA	NA	NA	AT3G48770.1	DNA binding;ATP binding 	LOC_Os11g31500.1	"ATP binding protein, putative"	Medtr8g011570.1	"Proteinase inhibitor I3, Kunitz legume; ATP-binding region, ATPase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221824.1.S1_at	A	A2TS	POPTR_0060s00230	POPTR_0060s00230 (11)//POPTR_0019s02175 (10)	scaffold_19:2019719-2023621(-) (10)//scaffold_60:26468-27296(-) (11)//scaffold_60:29768-30028(-) (9)//scaffold_60:64998-65257(-) (9)//scaffold_60:101652-101912(-) (9)	POPTR_0060s00270 (6)//POPTR_0019s02140 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221825.1.S1_at	A	A1TS	POPTR_0097s00250	POPTR_0097s00250 (11)	scaffold_97:21276-21715(-) (11)	NA	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.2	AAA ATPase; 26S proteasome subunit P45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221828.1.S1_at	A	A1MS	POPTR_0004s15000	POPTR_0004s15000 (10)	scaffold_4:15660914-15661051(-) (10)	NA	NA	NA	AT1G49660.1	carboxyesterase 5 	LOC_Os08g37060.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221829.1.S1_at	A	A2TS	POPTR_0017s11380	POPTR_0017s11380 (11)//POPTR_0017s11400 (10)	scaffold_17:11136379-11136712(-) (11)//scaffold_17:11152544-11152877(-) (10)	POPTR_0891s00200 (8)//POPTR_1312s00200 (6)	Q9ZQ99	Cytokinin-O-glucosyltransferase 1	AT5G12890.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g42690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g094730.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221830.1.S1_at	A	A1TS	POPTR_0003s02930	POPTR_0003s02930 (11)	scaffold_3:3089343-3089869(+) (11)	NA	NA	NA	AT5G48050.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.221831.1.S1_at	A	A1TS	POPTR_0060s00220	POPTR_0060s00220 (11)	scaffold_60:24100-24411(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221831.1.S1_x_at	A	A1TS	POPTR_0060s00220	POPTR_0060s00220 (11)	scaffold_60:24100-24411(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221833.1.S1_at	A	A1TS	POPTR_0025s00430	POPTR_0025s00430 (11)	scaffold_25:179778-179855(+) (11)	NA	Q39224	Protein SRG1	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08060.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.221833.1.S1_x_at	A	A1TS	POPTR_0025s00430	POPTR_0025s00430 (11)	scaffold_25:179184-179855(+) (11)	NA	Q39224	Protein SRG1	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08060.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.221834.1.S1_at	A	A1MS	POPTR_0015s15660	POPTR_0015s15660 (9)	scaffold_15:14894083-14894828(+) (9)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221839.1.S1_at	A	A1TS	POPTR_0021s01080	POPTR_0021s01080 (11)	scaffold_21:650452-651285(-) (11)	NA	Q8K1N1	Calcium-independent phospholipase A2-gamma	AT1G61850.2	phospholipases;galactolipases 	LOC_Os07g33670.1	"patatin-like phospholipase family protein, expressed"	Medtr8g146470.1	Patatin 	GO:0006629|lipid metabolic process	GO:0005515|protein binding	NA
PtpAffx.221840.1.S1_at	A	A1TS	POPTR_0005s14330	POPTR_0005s14330 (11)	scaffold_5:11400947-11401221(-) (11)	NA	O04867	Glutamine synthetase	AT1G66200.3	glutamine synthase clone F11 	LOC_Os03g12290.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221840.1.S1_x_at	A	A1TS	POPTR_0005s14330	POPTR_0005s14330 (11)	scaffold_5:11400947-11401221(-) (11)	NA	O04867	Glutamine synthetase	AT1G66200.3	glutamine synthase clone F11 	LOC_Os03g12290.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221841.1.S1_at	A	A1TS	POPTR_0014s00710	POPTR_0014s00710 (11)	scaffold_14:669576-669772(+) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g005680.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221841.1.S1_x_at	A	A1TS	POPTR_0014s00710	POPTR_0014s00710 (11)	scaffold_14:669407-669772(+) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g005680.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221842.1.S1_at	A	A1TS	POPTR_0014s00690	POPTR_0014s00690 (11)	scaffold_14:648950-649777(+) (11)	NA	NA	NA	AT2G30590.1	WRKY DNA-binding protein 21 	NA	NA	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.221843.1.S1_at	A	A1TS	POPTR_0014s00680	POPTR_0014s00680 (11)	scaffold_14:646184-646533(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221843.1.S1_x_at	A	A1TS	POPTR_0014s00680	POPTR_0014s00680 (11)	scaffold_14:646184-646532(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221849.1.S1_at	A	A1TS	POPTR_0006s16620	POPTR_0006s16620 (10)	scaffold_6:14496999-14497159(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221856.1.S1_s_at	A	A3TS	POPTR_0061s00216	POPTR_0061s00216 (11)//POPTR_0061s00220 (11)//POPTR_0012s01870 (10)	scaffold_12:1420677-1420872(-) (10)//scaffold_61:92938-93133(+) (11)//scaffold_61:99281-99476(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221857.1.S1_at	A	A2TS	POPTR_0012s01870	POPTR_0061s00220 (11)//POPTR_0012s01870 (11)	scaffold_12:1419557-1420076(-) (11)//scaffold_61:100077-100596(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221858.1.S1_at	A	A1TS	POPTR_0031s00245	POPTR_0031s00245 (11)	scaffold_31:54977-55849(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221858.1.S1_x_at	A	A1TS	POPTR_0031s00245	POPTR_0031s00245 (11)	scaffold_31:54977-55849(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221859.1.S1_at	A	A2TS	POPTR_0001s42520	POPTR_0001s42520 (11)//POPTR_0001s43630 (10)	scaffold_1:42506262-42506404(+) (11)//scaffold_1:43850330-43850365(-) (10)//scaffold_49:94179-94213(+) (9)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221859.1.S1_x_at	A	A1TS	POPTR_0001s42520	POPTR_0001s42520 (9)	scaffold_1:42504942-42506404(+) (11)//scaffold_1:43849809-43850365(-) (10)//scaffold_49:94183-94733(+) (9)	POPTR_0001s43630 (7)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.22186.1.A1_at	A	A1TS	POPTR_0005s11520	POPTR_0005s11520 (11)	scaffold_5:8357531-8357957(-) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr8g089870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.221860.1.S1_s_at	A	A1TS	POPTR_0008s20970	POPTR_0008s20970 (11)	scaffold_8:15015822-15016188(-) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.221861.1.S1_at	A	A1TS	POPTR_0001s43540	POPTR_0001s43540 (11)	scaffold_1:43701121-43701895(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221864.1.S1_at	A	A1TS	POPTR_0016s12140	POPTR_0016s12140 (11)	scaffold_16:11446864-11447356(-) (11)	NA	Q67BJ4	Lactosylceramide 4-alpha-galactosyltransferase	AT3G09020.1	"alpha 1,4-glycosyltransferase family protein "	LOC_Os04g44740.1	"glycosyltransferase sugar-binding region containing DXD motif, putative, expressed"	Medtr3g024730.1	"Glycosyltransferase sugar-binding region containing DXD motif; Alpha 1,4-glycosyltransferase conserved region "	NA	GO:0008378|galactosyltransferase activity	GO:0005795|Golgi stack
PtpAffx.221867.1.S1_s_at	A	A1TS	POPTR_0012s01440	POPTR_0012s01440 (11)	scaffold_12:1041659-1042262(+) (11)	POPTR_0012s01490 (7)	NA	NA	AT5G24130.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g15740.1	expressed protein	Medtr3g124560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221869.1.S1_s_at	A	A3TS	POPTR_0002s23880	POPTR_0002s23880 (11)//POPTR_0011s01900 (11)//POPTR_0014s14110 (11)	scaffold_1:35069946-35069980(+) (11)//scaffold_11:888972-889005(+) (10)//scaffold_11:1216138-1216172(-) (11)//scaffold_11:1261451-1261485(-) (10)//scaffold_11:1330203-1330236(-) (10)//scaffold_11:1399664-1399698(-) (11)//scaffold_11:1470101-1470135(-) (11)//scaffold_11:1491533-1491567(-) (11)//scaffold_14:10333779-10333812(+) (10)//scaffold_18:2593752-2593786(+) (11)//scaffold_2:21350621-21350654(-) (10)//scaffold_605:10109-10142(-) (10)	NA	NA	NA	AT5G13950.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os07g27760.1	expressed protein	Medtr7g097240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221869.1.S1_x_at	A	A1TS	POPTR_0011s01900	POPTR_0011s01900 (10)	scaffold_1:35069912-35070000(+) (10)//scaffold_11:1216118-1216206(-) (10)//scaffold_11:1330183-1330617(-) (10)//scaffold_11:1470081-1470169(-) (10)//scaffold_18:2593718-2593806(+) (10)//scaffold_605:10089-10177(-) (9)	NA	NA	NA	AT5G13950.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1). 	NA	NA	Medtr7g097240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221871.1.S1_x_at	A	A1TS	POPTR_0011s01650	POPTR_0011s01650 (11)	scaffold_11:1152104-1152166(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g14220.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.221872.1.S1_s_at	A	A1TS	POPTR_0012s08610	POPTR_0012s08610 (9)	scaffold_12:9720445-9720934(-) (11)	NA	NA	NA	AT3G26600.1	armadillo repeat only 4 	LOC_Os08g43500.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g034510.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221878.1.S1_at	A	A1MS	POPTR_0008s22260	POPTR_0008s22260 (11)	scaffold_8:16667859-16668091(-) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g06280.2	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr8g138640.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.22188.1.S1_at	A	A1TS	POPTR_0009s08620	POPTR_0009s08620 (10)	scaffold_9:7827705-7828579(-) (10)	NA	Q9LPM9	Branched-chain-amino-acid aminotransferase 6	AT1G50110.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os03g12890.2	"aminotransferase domain containing protein, putative, expressed"	Medtr4g122070.1	Branched-chain amino acid aminotransferase II 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.221880.1.S1_at	A	A1TS	POPTR_0008s22240	POPTR_0008s22240 (11)	scaffold_8:16645323-16645366(+) (11)	NA	NA	NA	AT4G15840.1	BTB/POZ domain-containing protein 	LOC_Os01g70670.2	"BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr8g138670.1	BTB/POZ; TatD-related deoxyribonuclease; MATH; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221880.1.S1_x_at	A	A1TS	POPTR_0008s22240	POPTR_0008s22240 (11)	scaffold_8:16645179-16645422(+) (11)	NA	NA	NA	AT4G15840.1	BTB/POZ domain-containing protein 	LOC_Os01g70670.2	"BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr8g138670.1	BTB/POZ; TatD-related deoxyribonuclease; MATH; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221882.1.S1_at	A	A1MS	POPTR_0004s19360	POPTR_0004s19360 (10)	scaffold_3:17070471-17070953(+) (10)//scaffold_4:19222010-19222499(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221889.1.S1_s_at	A	A1TS	POPTR_0003s12520	POPTR_0003s12520 (11)	scaffold_3:13073681-13074110(+) (11)	NA	Q9SH27	Protein LURP-one-related 4	AT1G63410.1	Protein of unknown function (DUF567) 	LOC_Os07g47540.1	"DUF567 domain containing protein, putative, expressed"	Medtr4g149680.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22189.1.S1_at	A	A1TS	POPTR_0015s14540	POPTR_0015s14540 (11)	scaffold_15:14094908-14096451(-) (11)	NA	NA	NA	AT5G51545.1	low psii accumulation2 	LOC_Os02g03250.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221890.1.S1_at	A	A1TS	POPTR_0016s05730	POPTR_0016s05730 (11)	scaffold_16:3671474-3671688(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221891.1.S1_at	A	A1TS	POPTR_0011s12780	POPTR_0011s12780 (11)	scaffold_11:15469421-15469461(+) (11)	NA	Q8TFG7	tRNA (guanine-N(1)-)-methyltransferase	AT4G27340.1	Met-10+ like family protein 	LOC_Os01g29409.1	"tRNA methyltransferase, putative, expressed"	Medtr2g095630.1	Protein of unknown function Met10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221891.1.S1_s_at	A	A1TS	POPTR_0011s12780	POPTR_0011s12780 (11)	scaffold_11:15469337-15469435(+) (11)	NA	Q8TFG7	tRNA (guanine-N(1)-)-methyltransferase	AT4G27340.1	Met-10+ like family protein 	LOC_Os01g29409.1	"tRNA methyltransferase, putative, expressed"	Medtr2g095630.1	Protein of unknown function Met10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221891.1.S1_x_at	A	A1TS	POPTR_0011s12780	POPTR_0011s12780 (11)	scaffold_11:15469371-15469482(+) (11)	NA	Q8TFG7	tRNA (guanine-N(1)-)-methyltransferase	AT4G27340.1	Met-10+ like family protein 	LOC_Os01g29409.1	"tRNA methyltransferase, putative, expressed"	Medtr2g095630.1	Protein of unknown function Met10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221892.1.S1_at	A	A1MS	POPTR_0011s12780	POPTR_0011s12780 (11)	scaffold_11:15468619-15468661(+) (11)	NA	Q8TFG7	tRNA (guanine-N(1)-)-methyltransferase	AT4G27340.1	Met-10+ like family protein 	LOC_Os01g29409.1	"tRNA methyltransferase, putative, expressed"	Medtr2g095630.1	Protein of unknown function Met10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221892.1.S1_x_at	A	A1MS	POPTR_0011s12780	POPTR_0011s12780 (10)	scaffold_11:15468070-15468661(+) (11)	NA	Q8TFG7	tRNA (guanine-N(1)-)-methyltransferase	AT4G27340.1	Met-10+ like family protein 	LOC_Os01g29409.1	"tRNA methyltransferase, putative, expressed"	Medtr2g095630.1	Protein of unknown function Met10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221893.1.S1_at	A	A1TS	POPTR_0006s22300	POPTR_0006s22300 (11)	scaffold_6:21318759-21318964(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221898.1.S1_s_at	A	A2TS	POPTR_0019s10390	POPTR_0019s10390 (11)//POPTR_0019s10400 (11)	scaffold_19:11946990-11947706(-) (11)//scaffold_19:11955793-11956504(-) (11)	NA	Q9LXN3	Probable fatty acyl-CoA reductase 4	AT3G44540.1	fatty acid reductase 4 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221901.1.S1_at	A	A1TS	POPTR_0014s07520	POPTR_0014s07520 (10)	scaffold_14:5651064-5651572(-) (10)	NA	Q9S7G7	Myb-related protein 3R-1	AT4G32730.2	Homeodomain-like protein 	LOC_Os12g13570.1	"MYB family transcription factor, putative, expressed"	AC225518_14.1	Homeodomain-like; AC225518.12 45180-39703 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221905.1.S1_s_at	A	A2TS	POPTR_0126s00220	POPTR_0126s00220 (11)//POPTR_0018s14530 (9)	scaffold_126:10372-10597(+) (11)//scaffold_18:14701603-14701832(+) (11)	NA	NA	NA	AT1G04645.1	Plant self-incompatibility protein S1 family 	NA	NA	Medtr8g094010.1	Plant self-incompatibility S1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221910.1.S1_at	A	A1TS	POPTR_0006s13110	POPTR_0006s13110 (9)	scaffold_6:10325583-10326388(-) (11)	NA	Q2UM42	Probable catabolite repression protein creC	AT3G53390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g07450.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g121380.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221912.1.S1_at	A	A1MS	POPTR_0031s00460	POPTR_0031s00460 (9)	scaffold_31:298775-310024(+) (9)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221916.1.S1_s_at	A	A1TS	POPTR_0015s14630	POPTR_0015s14630 (11)	scaffold_15:14162537-14162739(+) (11)	NA	Q9SB36	"Pentatricopeptide repeat-containing protein At4g25270, chloroplastic"	AT4G25270.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g63560.1	"pentatricopeptide, putative, expressed"	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221922.1.S1_at	A	A1TS	POPTR_0002s19570	POPTR_0002s19570 (11)	scaffold_2:15534826-15535127(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221924.1.S1_at	A	A1TS	POPTR_0014s06280	POPTR_0014s06280 (11)	scaffold_14:4784158-4784734(+) (11)	NA	Q9SLN5	Methionine aminopeptidase 1A	AT2G45240.1	methionine aminopeptidase 1A 	LOC_Os10g36470.2	"peptidase, M24 family protein, putative, expressed"	Medtr5g017630.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	GO:0008270|zinc ion binding	NA
PtpAffx.221925.1.S1_at	A	A1TS	POPTR_0009s00500	POPTR_0009s00500 (11)	scaffold_9:353199-353576(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221931.1.S1_at	A	A1TS	POPTR_0002s01940	POPTR_0002s01940 (11)	scaffold_2:1038058-1038760(+) (11)	NA	Q06364	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G75990.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os08g43640.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.221936.1.S1_at	A	A1TS	POPTR_0005s10670	POPTR_0005s10670 (11)	scaffold_5:7673631-7674093(+) (11)	NA	NA	NA	AT4G35720.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os11g06110.1	"carrier, putative, expressed"	Medtr8g088780.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221937.1.S1_at	A	A1TS	POPTR_0005s10710	POPTR_0005s10710 (11)	scaffold_5:7690501-7691411(+) (11)	NA	Q9FIA1	GDSL esterase/lipase At5g55050	AT5G55050.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g088830.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.221938.1.S1_at	A	A1TS	POPTR_0005s10720	POPTR_0005s10720 (10)	scaffold_5:7694596-7695074(+) (10)	NA	Q9SHX9	Putative F-box protein At1g65770	AT1G65770.1	ascorbic acid mannose pathway regulator 1 	NA	NA	Medtr8g088900.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221939.1.S1_at	A	A1TS	POPTR_0005s10730	POPTR_0005s10730 (11)	scaffold_5:7704585-7704860(+) (11)	NA	Q9SHX9	Putative F-box protein At1g65770	AT1G65770.1	ascorbic acid mannose pathway regulator 1 	LOC_Os11g39609.1	OsFBDUF64 - F-box and DUF domain containing protein	Medtr8g088880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22194.1.A1_at	A	A1TS	POPTR_0013s06500	POPTR_0013s06500 (11)	scaffold_13:5107674-5108031(+) (11)	NA	Q55CU8	Random slug protein 5	AT1G22180.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g51610.2	"CRAL/TRIO domain containing protein, expressed"	Medtr7g104350.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221940.1.S1_at	A	A1TS	POPTR_0005s10800	POPTR_0005s10800 (11)	scaffold_5:7747022-7748392(+) (11)	NA	NA	NA	AT5G66050.1	Wound-responsive family protein 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.221941.1.S1_at	A	A1TS	POPTR_0005s10860	POPTR_0005s10860 (11)	scaffold_5:7814302-7816211(+) (11)	NA	NA	NA	AT4G35760.1	NAD(P)H dehydrogenase (quinone)s 	LOC_Os03g03949.2	"electron carrier/ protein disulfide oxidoreductase, putative, expressed"	Medtr5g023150.1	Thioredoxin-like fold; Vitamin K epoxide reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221943.1.S1_x_at	A	A1TS	POPTR_0005s10880	POPTR_0005s10880 (9)	scaffold_5:7846348-7846524(-) (11)	NA	NA	NA	AT5G10490.2	MSCS-like 2 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221944.1.S1_at	A	A1TS	POPTR_0005s10890	POPTR_0005s10890 (11)	scaffold_5:7822706-7847013(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g047460.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221944.1.S1_x_at	A	A1TS	POPTR_0005s10890	POPTR_0005s10890 (11)	scaffold_5:7822706-7847017(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g047460.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221945.1.S1_x_at	A	A1TS	POPTR_0005s10900	POPTR_0005s10900 (11)	scaffold_5:7846438-7848562(-) (11)	NA	NA	NA	AT5G10490.3	MSCS-like 2 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221946.1.S1_at	A	A1TS	POPTR_0005s10930	POPTR_0005s10930 (11)	scaffold_5:7862404-7862523(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g032050.1	"Uncharacterized protein At1g76070, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221946.1.S1_s_at	A	A1TS	POPTR_0005s10930	POPTR_0005s10930 (11)	scaffold_5:7862558-7862981(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g032050.1	"Uncharacterized protein At1g76070, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221947.1.S1_at	A	A1TS	POPTR_0005s10970	POPTR_0005s10970 (11)	scaffold_5:7881473-7883585(+) (11)	NA	NA	NA	AT2G17710.1	unknown protein; Has 39 Blast hits to 39 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g47310.1	expressed protein	Medtr5g022960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221949.1.S1_at	A	A1TS	POPTR_0005s11010	POPTR_0005s11010 (11)	scaffold_5:7947560-7948463(+) (11)	NA	Q9LK35	Receptor-like protein kinase THESEUS 1	AT5G54380.1	protein kinase family protein 	LOC_Os06g03610.1	"TKL_IRAK_CrRLK1L-1.13 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g089150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221950.1.S1_at	A	A1TS	POPTR_0005s11040	POPTR_0005s11040 (11)	scaffold_5:7988442-7988947(+) (11)	NA	Q3TWI9	Transmembrane protein 63B	AT4G35870.1	early-responsive to dehydration stress protein (ERD4) 	LOC_Os03g04450.1	expressed protein	Medtr8g089170.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.221951.1.S1_at	A	A1TS	POPTR_0005s11060	POPTR_0005s11060 (11)	scaffold_5:8012468-8013200(-) (11)	NA	O74828	Pre-rRNA-processing protein esf1	AT3G01160.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink). "	NA	NA	Medtr4g165780.1	"ESF1 homolog, related "	NA	NA	GO:0005634|nucleus
PtpAffx.221952.1.S1_s_at	A	A1TS	POPTR_0005s11080	POPTR_0005s11080 (11)	scaffold_5:8028719-8030068(-) (11)	NA	Q6DJF8	UPF0563 protein C17orf95 homolog	AT1G63855.3	Putative methyltransferase family protein 	LOC_Os02g02800.1	"AGAP001222-PA, putative, expressed"	Medtr5g022840.1	"UPF0563 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221953.1.S1_at	A	A1TS	POPTR_0005s11100	POPTR_0005s11100 (11)	scaffold_5:8042864-8043055(-) (11)	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.221953.1.S1_s_at	A	A1TS	POPTR_0005s11100	POPTR_0005s11100 (11)	scaffold_5:8042926-8043251(-) (11)	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.221954.1.S1_at	A	A1TS	POPTR_0005s11110	POPTR_0005s11110 (11)	scaffold_5:8046007-8046752(-) (11)	NA	Q9ZVX8	Probable aquaporin PIP2-8	AT2G16850.1	plasma membrane intrinsic protein 2;8 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.221955.1.S1_at	A	A1TS	POPTR_0005s11140	POPTR_0005s11140 (11)	scaffold_5:8085588-8085978(+) (11)	NA	Q84JK2	Protein FD	AT4G35900.1	Basic-leucine zipper (bZIP) transcription factor family protein 	NA	NA	Medtr5g022730.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.221956.1.S1_at	A	A1TS	POPTR_0005s11170	POPTR_0005s11170 (11)	scaffold_5:8109289-8109811(+) (11)	NA	Q0WVU0	Pentatricopeptide repeat-containing protein At3g51320	AT3G51320.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g01635.1	expressed protein	Medtr5g022670.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221957.1.S1_at	A	A1TS	POPTR_0005s11240	POPTR_0005s11240 (11)	scaffold_5:8145161-8145550(-) (11)	NA	Q9SI03	Metal tolerance protein 12	AT2G04620.1	Cation efflux family protein 	LOC_Os08g32650.1	"cation efflux family protein, putative, expressed"	Medtr7g111990.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.221958.1.S1_at	A	A1TS	POPTR_0005s11250	POPTR_0005s11250 (11)	scaffold_5:8152291-8152903(+) (11)	NA	NA	NA	AT5G66110.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g17100.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g022520.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.221959.1.S1_at	A	A1TS	POPTR_0005s11280	POPTR_0005s11280 (9)	scaffold_5:8171206-8172278(+) (9)	NA	Q9EQH3	Vacuolar protein sorting-associated protein 35	AT2G17790.1	VPS35 homolog A 	LOC_Os03g58700.1	"vacuolar protein sorting-associated protein 35, putative, expressed"	Medtr5g022510.1	Vacuolar protein sorting-associated protein 35 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221961.1.S1_at	A	A1TS	POPTR_0005s11310	POPTR_0005s11310 (11)	scaffold_5:8194406-8195700(+) (11)	NA	Q9MBA3	Cell cycle checkpoint protein RAD17	AT5G66130.1	RADIATION SENSITIVE 17 	LOC_Os03g13850.1	"cell cycle checkpoint protein RAD17, putative, expressed"	Medtr8g089430.1	Checkpoint protein Rad24 	GO:0007049|cell cycle||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	NA	GO:0005634|nucleus
PtpAffx.221962.1.S1_at	A	A1TS	POPTR_0005s11350	POPTR_0005s11350 (11)	scaffold_5:8212348-8213446(+) (11)	NA	O23693	MLO-like protein 4	AT1G11000.1	Seven transmembrane MLO family protein 	LOC_Os11g07912.1	"MLO domain containing protein, putative, expressed"	Medtr5g022330.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.221963.1.S1_at	A	A1TS	POPTR_0005s11370	POPTR_0005s11370 (11)	scaffold_5:8218979-8221550(+) (11)	NA	NA	NA	AT2G17840.1	Senescence/dehydration-associated protein-related 	LOC_Os06g50330.1	"senescence-associated protein, putative, expressed"	Medtr5g022360.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221963.1.S1_s_at	A	A1TS	POPTR_0005s11370	POPTR_0005s11370 (11)	scaffold_5:8218865-8221265(+) (11)	NA	NA	NA	AT2G17840.1	Senescence/dehydration-associated protein-related 	LOC_Os06g50330.1	"senescence-associated protein, putative, expressed"	Medtr5g022360.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221964.1.S1_at	A	A1TS	POPTR_0005s11390	POPTR_0005s11390 (11)	scaffold_5:8238598-8239316(-) (11)	NA	Q9LPL3	Putative flavin-containing monooxygenase YUCCA11	AT1G21430.1	Flavin-binding monooxygenase family protein 	LOC_Os12g08780.1	"flavin monooxygenase, putative, expressed"	Medtr5g034600.1	"Monooxygenase, FAD-binding; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221965.1.S1_at	A	A1TS	POPTR_0005s11420	POPTR_0005s11420 (11)	scaffold_5:8254613-8255218(+) (11)	NA	NA	NA	AT3G51280.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g36740.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g089440.1	"male sterility MS5, putative  putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221966.1.S1_at	A	A1TS	POPTR_0005s11450	POPTR_0005s11450 (11)	scaffold_5:8275125-8275714(+) (11)	NA	NA	NA	AT4G34950.1	Major facilitator superfamily protein 	LOC_Os09g36600.1	"nodulin, putative, expressed"	Medtr5g022310.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221967.1.S1_at	A	A1TS	POPTR_0005s11540	POPTR_0005s11540 (11)	scaffold_5:8369345-8370326(-) (11)	NA	Q9UBZ4	DNA-(apurinic or apyrimidinic site) lyase 2	AT4G36050.2	endonuclease/exonuclease/phosphatase family protein 	LOC_Os09g36530.2	"endonuclease/exonuclease/phosphatase family protein, putative, expressed"	Medtr8g089910.1	"Exodeoxyribonuclease III xth; Zinc finger, GRF-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221968.1.S1_at	A	A1TS	POPTR_0005s11550	POPTR_0005s11550 (11)	scaffold_5:8379061-8379775(+) (11)	NA	Q9LT23	Transcription factor bHLH121	AT3G19860.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g23823.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr4g111220.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.221969.1.S1_at	A	A1TS	POPTR_0005s11650	POPTR_0005s11650 (11)	scaffold_5:8465726-8466726(+) (11)	NA	NA	NA	AT2G17940.1	Plant protein of unknown function (DUF827) 	LOC_Os04g02650.1	expressed protein	Medtr5g021880.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22197.1.S1_at	A	A1TS	POPTR_0002s00210	POPTR_0002s00210 (11)	scaffold_2:9595-11668(-) (11)	NA	Q76P23	Mitochondrial substrate carrier family protein Q	AT2G39970.1	Mitochondrial substrate carrier family protein 	LOC_Os09g33470.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g089250.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221970.1.S1_at	A	A1TS	POPTR_0005s11690	POPTR_0005s11690 (11)	scaffold_5:8518530-8518986(-) (11)	NA	Q3TSG4	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.221971.1.S1_at	A	A1TS	POPTR_0005s11730	POPTR_0005s11730 (11)	scaffold_5:8543468-8544017(+) (11)	NA	NA	NA	AT2G18193.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr2g092810.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221972.1.S1_at	A	A1TS	POPTR_0005s11750	POPTR_0005s11750 (11)	scaffold_5:8553277-8554127(-) (11)	NA	Q69SG5	Endoglucanase 24	AT1G19940.1	glycosyl hydrolase 9B5 	LOC_Os09g36350.1	"endoglucanase, putative, expressed"	Medtr3g156150.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.221973.1.S1_at	A	A1TS	POPTR_0005s11790	POPTR_0005s11790 (11)	scaffold_5:8580075-8580643(-) (11)	NA	Q93ZN9	"LL-diaminopimelate aminotransferase, chloroplastic"	AT2G13810.1	AGD2-like defense response protein 1 	LOC_Os03g18810.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr2g008560.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.221974.1.S1_at	A	A1TS	POPTR_0005s11820	POPTR_0005s11820 (10)	scaffold_5:8596658-8597224(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G36430.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221975.1.S1_at	A	A1TS	POPTR_0005s11840	POPTR_0005s11840 (11)	scaffold_5:8607058-8608774(-) (11)	NA	NA	NA	AT5G66290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g51700.1	expressed protein	Medtr5g021690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221976.1.S1_at	A	A1MS	POPTR_0005s11865	POPTR_0005s11865 (9)	scaffold_5:8624049-8624283(+) (9)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221977.1.S1_at	A	A1TS	POPTR_0005s11890	POPTR_0005s11890 (11)	scaffold_5:8676181-8676356(+) (11)	NA	NA	NA	AT1G15380.2	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr5g021550.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221977.1.S1_s_at	A	A1TS	POPTR_0005s11890	POPTR_0005s11890 (11)	scaffold_5:8676081-8676485(+) (11)	NA	NA	NA	AT1G15380.2	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr5g021550.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221978.1.S1_at	A	A1TS	POPTR_0005s11920	POPTR_0005s11920 (10)	scaffold_5:8704803-8705523(+) (10)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr5g021420.1	"SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.221979.1.S1_at	A	A1TS	POPTR_0005s11990	POPTR_0005s11990 (11)	scaffold_5:8765513-8767210(-) (11)	NA	Q99L90	Microspherule protein 1	AT3G54350.3	Forkhead-associated (FHA) domain-containing protein  	LOC_Os03g58640.1	"FHA domain containing protein, putative, expressed"	Medtr8g090550.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221980.1.S1_at	A	A1TS	POPTR_0005s12010	POPTR_0005s12010 (11)	scaffold_5:8782251-8783050(-) (11)	NA	Q9SD39	Probable methyltransferase PMT27	AT3G51070.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g49860.1	"methyltransferase, putative, expressed"	Medtr5g021010.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.221981.1.S1_at	A	A1TS	POPTR_0005s12020	POPTR_0005s12020 (11)	scaffold_5:8800238-8801186(-) (11)	NA	NA	NA	AT3G51060.1	Lateral root primordium (LRP) protein-related 	LOC_Os09g36160.1	"LRP1, putative, expressed"	Medtr5g021040.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221982.1.S1_at	A	A1TS	POPTR_0005s12040	POPTR_0005s12040 (11)	scaffold_5:8832294-8834526(-) (11)	NA	Q14149	MORC family CW-type zinc finger protein 3	AT4G36280.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os10g10190.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	NA	GO:0005524|ATP binding	NA
PtpAffx.221983.1.S1_at	A	A1TS	POPTR_0005s12120	POPTR_0005s12120 (11)	scaffold_5:8890040-8890618(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT1G43910.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.221984.1.S1_s_at	A	A1TS	POPTR_0005s12130	POPTR_0005s12130 (11)	scaffold_5:8897843-8898071(-) (11)	NA	P24068	Ocs element-binding factor 1	AT1G75390.1	basic leucine-zipper 44 	LOC_Os08g26880.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.221985.1.S1_at	A	A1TS	POPTR_0005s12180	POPTR_0005s12180 (11)	scaffold_5:8940924-8941651(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221986.1.S1_at	A	A1TS	POPTR_0005s12220	POPTR_0005s12220 (11)	scaffold_5:8978638-8979593(-) (11)	NA	NA	NA	AT3G05220.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g56570.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g020880.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.221987.1.S1_at	A	A1TS	POPTR_0005s12230	POPTR_0005s12230 (11)	scaffold_5:8988990-8989472(-) (11)	NA	NA	NA	AT5G66440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g162630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221988.1.S1_at	A	A1TS	POPTR_0005s12330	POPTR_0005s12330 (11)	scaffold_5:9099010-9099497(+) (11)	NA	Q9ZPV9	Syntaxin-112	AT2G18260.1	syntaxin of plants 112 	LOC_Os03g52650.1	"syntaxin-related protein, putative, expressed"	Medtr5g020560.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
PtpAffx.221989.1.S1_at	A	A1TS	POPTR_0005s12350	POPTR_0005s12350 (11)	scaffold_5:9116464-9118421(-) (11)	NA	Q9ZPW2	Anaphase-promoting complex subunit 10	AT2G18290.1	anaphase promoting complex 10 	LOC_Os05g50360.1	"anaphase-promoting complex subunit 10, putative, expressed"	NA	NA	GO:0030071|regulation of mitotic metaphase/anaphase transition	GO:0005515|protein binding	GO:0005680|anaphase-promoting complex
PtpAffx.221990.1.S1_at	A	A1TS	POPTR_0005s12370	POPTR_0005s12370 (11)	scaffold_5:9129904-9131030(-) (11)	NA	Q9ZPW3	Transcription factor bHLH64	AT2G18300.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g32510.1	"BHLH transcription factor, putative, expressed"	Medtr3g162340.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.221993.1.S1_at	A	A1TS	POPTR_0005s12630	POPTR_0005s12630 (11)	scaffold_5:9408974-9409642(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221994.1.S1_at	A	A1TS	POPTR_0005s12640	POPTR_0005s12640 (11)	scaffold_5:9409810-9410591(-) (11)	NA	NA	NA	AT4G36650.2	plant-specific TFIIB-related protein 	NA	NA	Medtr5g019800.1	Cyclin-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221995.1.S1_at	A	A1MS	POPTR_0005s12740	POPTR_0005s12740 (9)	scaffold_5:9499518-9499801(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221996.1.S1_at	A	A1TS	POPTR_0005s12760	POPTR_0005s12760 (11)	scaffold_5:9523416-9525307(-) (11)	NA	Q9ZU70	Homeobox-leucine zipper protein ATHB-21	AT2G18550.1	homeobox protein 21 	LOC_Os07g39320.1	"homeobox domain containing protein, expressed"	Medtr5g019570.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.221997.1.S1_at	A	A1TS	POPTR_0005s12780	POPTR_0005s12780 (11)	scaffold_5:9589042-9590214(+) (11)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	NA	NA	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221999.1.S1_at	A	A1MS	POPTR_0005s12810	POPTR_0005s12810 (9)	scaffold_5:9637890-9638384(+) (10)	NA	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43710.1	"cytochrome P450 72A1, putative, expressed"	Medtr8g045120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.221999.1.S1_s_at	A	A2TS	POPTR_0005s12810	POPTR_0006s14600 (11)//POPTR_0005s12810 (11)	scaffold_5:9637832-9638351(+) (11)//scaffold_6:11924959-11925478(-) (11)	NA	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43710.1	"cytochrome P450 72A1, putative, expressed"	Medtr8g045120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.222.1.S1_at	A	A1TS	POPTR_0011s05630	POPTR_0011s05630 (11)	scaffold_11:5599231-5600259(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g017900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22200.1.S1_a_at	A	A2TS	POPTR_0006s24000	POPTR_0018s05460 (11)//POPTR_0006s24000 (11)	scaffold_18:5034678-5034839(+) (11)//scaffold_6:22704399-22704560(-) (11)	NA	Q96H78	Solute carrier family 25 member 44	AT1G72820.1	Mitochondrial substrate carrier family protein 	LOC_Os03g07890.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g139520.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22200.2.S1_at	A	A1TS	POPTR_0006s24000	POPTR_0006s24000 (11)	scaffold_6:22704004-22704531(-) (11)	NA	Q96H78	Solute carrier family 25 member 44	AT1G72820.1	Mitochondrial substrate carrier family protein 	LOC_Os03g07890.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g139520.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22200.3.S1_a_at	A	A1TS	POPTR_0018s05460	POPTR_0018s05460 (11)	scaffold_18:5035001-5035232(+) (11)	NA	Q96H78	Solute carrier family 25 member 44	AT1G72820.1	Mitochondrial substrate carrier family protein 	LOC_Os03g07890.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g139520.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222000.1.S1_at	A	A1TS	POPTR_0005s12830	POPTR_0005s12830 (11)	scaffold_5:9645957-9646921(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222001.1.S1_at	A	A1TS	POPTR_0005s12860	POPTR_0005s12860 (11)	scaffold_5:9669349-9669694(+) (11)	NA	Q94ID7	"Geranylgeranyl pyrophosphate synthase, chloroplastic"	AT4G36810.1	geranylgeranyl pyrophosphate synthase 1 	LOC_Os07g39270.2	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.222002.1.S1_at	A	A1TS	POPTR_0005s12880	POPTR_0005s12880 (11)	scaffold_5:9688586-9688739(+) (11)	NA	Q9ZU29	Pentatricopeptide repeat-containing protein At2g01390	AT2G01390.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g21470.2	"pentatricopeptide, putative, expressed"	Medtr4g154950.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222003.1.S1_at	A	A1TS	POPTR_0005s12940	POPTR_0005s12940 (11)	scaffold_5:9801760-9802358(+) (11)	NA	O49564	Cysteine-rich receptor-like protein kinase 27	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g09960.1	"LYK8, putative, expressed"	Medtr5g019000.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222004.1.S1_at	A	A1TS	POPTR_0005s12980	POPTR_0005s12980 (11)	scaffold_5:9812129-9812663(+) (11)	NA	B3H4P1	Pentatricopeptide repeat-containing protein At5g66631	AT5G66631.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g07340.1	"pentatricopeptide, putative, expressed"	Medtr5g018980.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222005.1.S1_s_at	A	A2TS	POPTR_0005s13050	POPTR_0005s13050 (11)//POPTR_0005s13580 (11)	scaffold_5:9909639-9910288(+) (11)//scaffold_5:10643645-10644303(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222016.1.S1_at	A	A1TS	POPTR_0031s00430	POPTR_0031s00430 (11)	scaffold_31:261502-261663(+) (11)	NA	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.222016.1.S1_s_at	A	A1TS	POPTR_0031s00430	POPTR_0031s00430 (11)	scaffold_31:261749-261933(+) (11)//scaffold_31:288848-288988(+) (10)//scaffold_31:359915-360099(+) (11)	POPTR_0031s00361 (8)	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.222017.1.S1_at	A	A1TS	POPTR_0031s00361	POPTR_0031s00361 (10)	scaffold_31:196106-196666(+) (10)//scaffold_31:309170-309204(+) (10)//scaffold_31:359739-360248(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr3g076270.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.222018.1.S1_at	A	A4TS	POPTR_0001s18600	POPTR_0001s18600 (11)//POPTR_1957s00200 (11)//POPTR_0010s24180 (10)//POPTR_0938s00200 (9)	scaffold_1:15654614-15655055(-) (11)//scaffold_10:20511719-20512196(+) (10)//scaffold_1957:555-1030(+) (11)//scaffold_938:5708-6182(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222019.1.S1_at	A	A1TS	POPTR_0011s05000	POPTR_0011s05000 (10)	scaffold_11:4962063-4962723(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222026.1.S1_at	A	A2TS	POPTR_1020s00210	POPTR_1020s00210 (11)//POPTR_0001s04740 (10)	scaffold_1:3663247-3663624(-) (10)//scaffold_1020:823-5007(+) (11)	POPTR_1020s00200 (6)	Q10PP8	Metal tolerance protein 4	AT3G58060.1	Cation efflux family protein 	LOC_Os03g12530.1	"cation efflux family protein, putative, expressed"	Medtr3g083790.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.222027.1.S1_at	A	A1TS	POPTR_0001s04750	POPTR_0001s04750 (10)	scaffold_1:3664648-3665679(-) (10)	NA	Q10PP8	Metal tolerance protein 4	AT3G58060.1	Cation efflux family protein 	LOC_Os03g12530.1	"cation efflux family protein, putative, expressed"	Medtr3g083790.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.222037.1.S1_s_at	A	A2TS	POPTR_0001s07580	POPTR_0001s07580 (11)//POPTR_0001s07680 (10)	scaffold_1:5738199-5738577(+) (11)//scaffold_1:5810321-5810809(+) (10)	NA	Q9FMS6	Probable CCR4-associated factor 1 homolog 11	AT5G22250.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os04g58810.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr4g149570.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.222040.1.S1_x_at	A	A1MS	POPTR_0012s01950	POPTR_0012s01950 (9)	scaffold_12:1559306-1559901(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.222042.1.S1_at	A	A1TS	POPTR_0146s00250	POPTR_0146s00250 (11)	scaffold_146:42545-42850(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222043.1.S1_at	A	A1TS	POPTR_0146s00240	POPTR_0146s00240 (11)	scaffold_146:38717-39308(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222044.1.S1_at	A	A1TS	POPTR_0146s00230	POPTR_0146s00230 (11)	scaffold_146:34056-35705(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.222045.1.S1_at	A	A1TS	POPTR_0005s26680	POPTR_0005s26680 (9)	scaffold_5:24595418-24596006(-) (11)	NA	Q9LN22	"Pentatricopeptide repeat-containing protein At1g20300, mitochondrial"	AT1G20300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os09g37070.1	"pentatricopeptide, putative, expressed"	Medtr3g157290.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222046.1.S1_s_at	A	A1TS	POPTR_0008s08390	POPTR_0008s08390 (11)	scaffold_8:5205278-5205364(+) (11)	NA	Q652P9	Germin-like protein 9-3	AT1G02335.1	germin-like protein subfamily 2 member 2 precursor 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107640.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.222048.1.S1_at	A	A1TS	POPTR_0010s06890	POPTR_0010s06890 (11)	scaffold_10:8131723-8133216(+) (11)	NA	Q80UM7	Mannosyl-oligosaccharide glucosidase	AT1G67490.1	glucosidase 1 	LOC_Os01g69210.1	"mannosyl-oligosaccharide glucosidase, putative, expressed"	AC233656_18.1	"Glycoside hydrolase, family 63 AC233656.1 66442-60977 H EGN_Mt090430 200"	GO:0009311|oligosaccharide metabolic process	GO:0004573|mannosyl-oligosaccharide glucosidase activity	NA
PtpAffx.222049.1.S1_s_at	A	A1TS	POPTR_0002s00970	POPTR_0002s00970 (11)	scaffold_2:472972-474318(+) (11)	NA	Q3YK19	Fanconi anemia group J protein homolog	AT1G20720.1	RAD3-like DNA-binding helicase protein 	LOC_Os09g37920.1	"helicase, putative, expressed"	AC234703_2.1	"Xeroderma pigmentosum group D protein; ATP-dependent helicase, DEAH-box; ; AC234703.1 26378-15197 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004003|ATP-dependent DNA helicase activity	NA
PtpAffx.222051.1.S1_x_at	A	A1TS	POPTR_0018s14150	POPTR_0018s14150 (10)	scaffold_18:14414694-14414909(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT1G58190.2	receptor like protein 9 	LOC_Os06g04830.1	"leucine rich repeat protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.222053.1.S1_at	A	A1TS	POPTR_0006s21530	POPTR_0006s21530 (11)	scaffold_6:20575402-20576112(-) (11)	NA	NA	NA	AT5G06440.3	BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). 	LOC_Os11g36070.3	expressed protein	AC233682_33.1	"Myosin head, motor region; WGR; Glycosyl hydrolases 38, C-terminal AC233682.2 126964-129412 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222064.1.S1_s_at	A	A1TS	POPTR_1305s00200	POPTR_1305s00200 (9)	scaffold_13:14082483-14083642(-) (9)//scaffold_1305:4869-5844(+) (10)	POPTR_0013s13660 (6)	C0LGT6	LRR receptor-like serine/threonine-protein kinase EFR	AT5G20480.1	EF-TU receptor 	LOC_Os11g07120.2	"receptor kinase-like protein, identical, putative, expressed"	Medtr5g019030.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.222068.1.S1_at	A	A1TS	POPTR_0034s00220	POPTR_0034s00220 (11)	scaffold_34:110870-111524(-) (11)	NA	Q5IS35	Mitochondrial thiamine pyrophosphate carrier	AT5G48970.1	Mitochondrial substrate carrier family protein 	LOC_Os01g70800.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g138870.1	Mitochondrial carrier protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222068.1.S1_x_at	A	A1TS	POPTR_0034s00220	POPTR_0034s00220 (11)	scaffold_34:110849-111566(-) (11)	NA	Q5IS35	Mitochondrial thiamine pyrophosphate carrier	AT5G48970.1	Mitochondrial substrate carrier family protein 	LOC_Os01g70800.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g138870.1	Mitochondrial carrier protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222072.1.S1_s_at	A	A1TS	POPTR_0015s01340	POPTR_0015s01340 (11)	scaffold_15:831839-832348(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27570.1	"OsFBA3 - F-box and FBA domain containing protein, expressed"	Medtr2g029990.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222074.1.S1_at	A	A1TS	POPTR_0005s26680	POPTR_0005s26680 (11)	scaffold_5:24594691-24595047(-) (11)	NA	Q9LN22	"Pentatricopeptide repeat-containing protein At1g20300, mitochondrial"	AT1G20300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os09g37070.1	"pentatricopeptide, putative, expressed"	Medtr3g157290.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222075.1.S1_at	A	A1TS	POPTR_0005s26670	POPTR_0005s26670 (11)	scaffold_5:24592776-24593117(-) (11)	NA	Q9LN22	"Pentatricopeptide repeat-containing protein At1g20300, mitochondrial"	AT1G20300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os09g37070.1	"pentatricopeptide, putative, expressed"	Medtr3g157290.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222079.1.S1_s_at	A	A1MS	POPTR_0010s05880	POPTR_0010s05880 (11)	scaffold_10:7329750-7330245(+) (11)	NA	Q9SAD9	"Pentatricopeptide repeat-containing protein At1g13040, mitochondrial"	AT1G13040.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g48850.2	"PPR repeat containing protein, expressed"	Medtr8g112280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222082.1.S1_at	A	A1TS	POPTR_0173s00200	POPTR_0173s00200 (11)	scaffold_173:1487-1945(-) (11)	NA	NA	NA	AT5G49290.1	receptor like protein 56 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC235756_10.1	Leucine-rich repeat AC235756.1 88514-87135 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.222082.1.S1_x_at	A	A1TS	POPTR_0173s00200	POPTR_0173s00200 (11)	scaffold_173:1487-2052(-) (11)	NA	NA	NA	AT5G49290.1	receptor like protein 56 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC235756_10.1	Leucine-rich repeat AC235756.1 88514-87135 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.222083.1.S1_s_at	A	A2TS	POPTR_0025s00230	POPTR_0025s00230 (11)//POPTR_0025s00330 (10)	scaffold_25:13139-13500(+) (11)//scaffold_25:109881-110241(+) (10)	NA	NA	NA	AT4G32060.1	calcium-binding EF hand family protein 	LOC_Os04g42430.2	"EF hand family protein, putative, expressed"	Medtr8g122270.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222084.1.S1_at	A	A1TS	POPTR_0025s00220	POPTR_0025s00220 (11)	scaffold_25:10573-10870(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222086.1.S1_x_at	A	A1TS	POPTR_0204s00240	POPTR_0204s00240 (9)	scaffold_204:19886-20028(-) (9)	POPTR_0025s00320 (8)	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT1G07390.2	receptor like protein 1 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_74.1	Leucine-rich repeat AC233100.6 329525-327081 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.222087.1.S1_at	A	A1TS	POPTR_0001s36630	POPTR_0001s36630 (11)	scaffold_1:35313695-35314112(+) (11)	NA	Q5E9R3	EH domain-containing protein 1	AT3G20290.2	EPS15 homology domain 1 	LOC_Os06g47330.1	"dynamin family protein, putative, expressed"	Medtr5g101130.1	EPS15 homology (EH); Dynamin 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.222095.1.S1_s_at	A	A1TS	POPTR_0019s05180	POPTR_0019s05180 (11)	scaffold_19:5400034-5400687(-) (11)	NA	NA	NA	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.1	"HEAT repeat family protein, putative, expressed"	Medtr7g102560.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222098.1.S1_s_at	A	A1TS	POPTR_0006s21920	POPTR_0006s21920 (11)	scaffold_6:20888539-20889095(-) (11)	NA	Q9SF15	E3 ubiquitin-protein ligase PUB24	AT3G11840.1	plant U-box 24 	LOC_Os04g58920.1	"U-box domain-containing protein, putative, expressed"	Medtr2g105010.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.222101.1.S1_at	A	A1TS	POPTR_0797s00220	POPTR_0797s00220 (11)	scaffold_797:825-7513(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os11g34090.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222107.1.S1_at	A	A1TS	POPTR_0018s03810	POPTR_0018s03810 (10)	scaffold_18:3266722-3267021(-) (10)	NA	Q9LRR5	Putative disease resistance protein At3g14460	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g36920.1	"disease resistance protein, putative, expressed"	Medtr3g030870.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.222109.1.S1_s_at	A	A2TS	POPTR_0018s00310	POPTR_0209s00220 (11)//POPTR_0018s00310 (11)	scaffold_18:234113-234488(+) (11)//scaffold_209:26415-26790(+) (11)	NA	Q84KG5	"Carotenoid 9,10(9',10')-cleavage dioxygenase"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os09g15240.1	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222112.1.S1_x_at	A	A1TS	POPTR_0019s03240	POPTR_0019s03240 (9)	scaffold_19:3239164-3239410(-) (11)	POPTR_0011s01790 (8)//POPTR_0046s00320 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222114.1.S1_s_at	A	A1TS	POPTR_0010s16350	POPTR_0010s16350 (11)	scaffold_10:15314908-15315686(-) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.222124.1.S1_s_at	A	A3TS	POPTR_0011s03230	POPTR_0011s03230 (11)//POPTR_0011s03290 (11)//POPTR_0017s09250 (9)	scaffold_11:3386287-3386645(-) (11)//scaffold_11:3442556-3442914(-) (11)//scaffold_17:7876540-7876898(+) (9)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os07g35290.1	"TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222126.1.S1_at	A	A1TS	POPTR_0017s09360	POPTR_0017s09360 (11)	scaffold_17:7973914-7973962(+) (11)	NA	Q8H199	Cysteine-rich receptor-like protein kinase 14	AT4G23220.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 14 	LOC_Os07g35370.1	"TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222126.1.S1_s_at	A	A3TS	POPTR_0011s03220	POPTR_0017s09360 (11)//POPTR_0011s03280 (11)//POPTR_0011s03220 (11)	scaffold_11:3378293-3378495(+) (11)//scaffold_11:3433920-3434122(+) (11)//scaffold_17:7973533-7973735(+) (11)	NA	Q8H199	Cysteine-rich receptor-like protein kinase 14	AT4G23220.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 14 	LOC_Os07g35310.1	"TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222127.1.S1_at	A	A1TS	POPTR_0012s00800	POPTR_0012s00800 (11)	scaffold_12:468763-469301(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os12g12010.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g093720.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.222128.1.S1_at	A	A1TS	POPTR_0011s10740	POPTR_0011s10740 (11)	scaffold_11:13319796-13320884(-) (11)	NA	NA	NA	AT3G14850.2	TRICHOME BIREFRINGENCE-LIKE 41 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g064330.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222129.1.S1_at	A	A1TS	POPTR_0019s02900	POPTR_0019s02900 (11)	scaffold_19:2823310-2823798(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.222132.1.S1_x_at	A	A1TS	POPTR_0017s01600	POPTR_0017s01600 (11)	scaffold_17:1135700-1136075(+) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222135.1.S1_at	A	A1TS	POPTR_0017s01620	POPTR_0017s01620 (11)	scaffold_17:1158084-1158534(+) (11)	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222136.1.S1_s_at	A	A1TS	POPTR_0015s03980	POPTR_0015s03980 (11)	scaffold_15:3887973-3888020(-) (11)	NA	NA	NA	AT1G15060.1	"Uncharacterised conserved protein UCP031088, alpha/beta hydrolase "	LOC_Os01g49760.1	expressed protein	Medtr6g086800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222137.1.S1_at	A	A1MS	POPTR_0004s00950	POPTR_0004s00950 (10)	scaffold_4:460498-460881(-) (10)	NA	Q9ZS51	Peroxisomal membrane protein PMP22	AT4G04470.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os02g13270.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr1g090150.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.222138.1.S1_at	A	A1TS	POPTR_0018s13530	POPTR_0018s13530 (11)	scaffold_18:13840758-13841328(-) (11)	NA	P0C8S1	Probable disease resistance RPP8-like protein 2	AT1G50180.1	NB-ARC domain-containing disease resistance protein 	LOC_Os10g10360.3	"NBS-LRR disease resistance protein, putative, expressed"	Medtr2g043250.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222139.1.S1_s_at	A	A1TS	POPTR_0063s00280	POPTR_0063s00280 (11)	scaffold_63:83287-83578(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03460.1	Ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	AC233676_2.1	Ankyrin AC233676.2 11294-9342 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222141.1.S1_s_at	A	A1TS	POPTR_0015s15250	POPTR_0015s15250 (11)	scaffold_15:14473560-14474092(+) (9)//scaffold_15:14568001-14568656(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222145.1.S1_at	A	A1TS	POPTR_0010s25470	POPTR_0010s25470 (11)	scaffold_10:21143884-21144434(-) (11)	NA	Q3EAQ5	Probable peptide/nitrate transporter At3g43790	AT3G43790.2	zinc induced facilitator-like 2 	LOC_Os12g03899.3	"major facilitator superfamily antiporter, putative, expressed"	Medtr8g073830.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222145.1.S1_s_at	A	A1TS	POPTR_0010s25470	POPTR_0010s25470 (11)	scaffold_10:21143238-21143856(-) (11)	NA	Q3EAQ5	Probable peptide/nitrate transporter At3g43790	AT3G43790.2	zinc induced facilitator-like 2 	LOC_Os12g03899.3	"major facilitator superfamily antiporter, putative, expressed"	Medtr8g073830.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222146.1.S1_at	A	A1TS	POPTR_0387s00230	POPTR_0387s00230 (11)	scaffold_387:15693-15801(-) (11)	NA	Q9SF94	GDSL esterase/lipase At3g09930	AT3G09930.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g48800.3	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222147.1.S1_at	A	A1TS	POPTR_0387s00210	POPTR_0387s00210 (11)	scaffold_387:5278-5861(-) (11)	NA	NA	NA	AT1G13470.1	Protein of unknown function (DUF1262) 	LOC_Os08g31910.1	expressed protein	Medtr5g036770.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222156.1.S1_s_at	A	A1TS	POPTR_0011s01385	POPTR_0011s01385 (11)	scaffold_11:979475-979981(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g024390.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.222159.1.S1_at	A	A1TS	POPTR_0013s10280	POPTR_0013s10280 (11)	scaffold_13:10306590-10306959(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222161.1.S1_s_at	A	A1MS	POPTR_0013s10310	POPTR_0013s10310 (11)	scaffold_13:10333660-10334148(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT2G04050.1	MATE efflux family protein 	LOC_Os05g48040.1	"MATE efflux family protein, putative, expressed"	Medtr7g094030.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222164.1.S1_at	A	A1TS	POPTR_0031s00310	POPTR_0031s00310 (11)	scaffold_31:141273-141764(+) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222166.1.S1_at	A	A1TS	POPTR_0006s02530	POPTR_0006s02530 (9)	scaffold_6:1644732-1645136(+) (11)	NA	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.222169.1.S1_at	A	A1TS	POPTR_0008s00440	POPTR_0008s00440 (11)	scaffold_8:172684-174371(+) (11)	NA	NA	NA	AT1G78915.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g18720.1	"tetratricopeptide repeat containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222175.1.S1_at	A	A1MS	POPTR_0012s09680	POPTR_0012s09680 (9)	scaffold_12:10650823-10650861(+) (9)	NA	Q58D06	WD repeat-containing protein 74	AT1G29320.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g32350.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222176.1.S1_at	A	A1TS	POPTR_0031s00390	POPTR_0031s00390 (11)	scaffold_31:211464-212655(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222178.1.S1_at	A	A1TS	POPTR_0021s00210	POPTR_0021s00210 (11)	scaffold_21:35084-35508(+) (11)	POPTR_0001s36455 (8)	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012320.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222179.1.S1_at	A	A1TS	POPTR_0014s05280	POPTR_0014s05280 (11)	scaffold_14:3995023-3995134(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222179.1.S1_x_at	A	A1TS	POPTR_0014s05280	POPTR_0014s05280 (11)	scaffold_14:3995023-3995152(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222181.1.S1_at	A	A1TS	POPTR_0993s00200	POPTR_0993s00200 (10)	scaffold_993:2345-2793(-) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222182.1.S1_s_at	A	A2TS	POPTR_0001s46660	POPTR_0001s46660 (11)//POPTR_0001s46680 (11)	scaffold_1:47052752-47053133(+) (11)//scaffold_1:47071167-47071548(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30700.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.222184.1.S1_at	A	A1TS	POPTR_0046s00350	POPTR_0046s00350 (11)	scaffold_46:142730-150891(+) (11)	NA	Q9HG03	Peroxisomal biogenesis factor 6	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222186.1.S1_x_at	A	A1TS	POPTR_0039s00350	POPTR_0039s00350 (9)	scaffold_39:162428-162833(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G25440.1	receptor like protein 20 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094030.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.222191.1.S1_s_at	A	A2TS	POPTR_0016s03910	POPTR_0016s03950 (11)//POPTR_0016s03910 (11)	scaffold_16:2184782-2185279(+) (11)//scaffold_16:2214623-2215120(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38190.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067490.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222192.1.S1_at	A	A1TS	POPTR_0006s28900	POPTR_0006s28900 (11)	scaffold_6:26436166-26436764(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222193.1.S1_at	A	A1TS	POPTR_0011s01780	POPTR_0011s01780 (11)	scaffold_11:1402853-1403125(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222193.1.S1_s_at	A	A3TS	POPTR_0011s01690	POPTR_0011s01780 (11)//POPTR_0011s01690 (11)//POPTR_0011s01900 (11)	scaffold_11:888599-888748(+) (10)//scaffold_11:1216396-1216556(-) (11)//scaffold_11:1402820-1402980(-) (11)//scaffold_11:1470359-1470519(-) (11)//scaffold_11:1611735-1611895(-) (11)//scaffold_576:5089-5234(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr7g097240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222194.1.S1_x_at	A	A3TS	POPTR_0011s01790	POPTR_0011s01790 (11)//POPTR_0019s03240 (10)//POPTR_0046s00320 (9)	scaffold_11:1405205-1405447(+) (11)//scaffold_19:3239236-3239410(-) (10)//scaffold_46:138955-139156(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222195.1.S1_x_at	A	A2TS	POPTR_0011s01770	POPTR_0011s01770 (11)//POPTR_0011s01805 (11)	scaffold_11:1353006-1353125(+) (9)//scaffold_11:1394036-1394194(+) (11)//scaffold_11:1408343-1411528(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.222196.1.S1_s_at	A	A2TS	POPTR_0018s02985	POPTR_0576s00200 (11)//POPTR_0018s02985 (11)	scaffold_1:35070455-35070867(-) (11)//scaffold_11:889491-889903(-) (11)//scaffold_11:1192669-1193068(+) (9)//scaffold_11:1395497-1398922(+) (11)//scaffold_11:1546400-1546802(+) (10)//scaffold_18:2595177-2595589(-) (11)//scaffold_576:3042-3454(+) (11)//scaffold_605:151-562(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.222196.1.S1_x_at	A	A1TS	POPTR_0576s00200	POPTR_0576s00200 (11)	scaffold_576:2828-4115(+) (11)	NA	NA	NA	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g012180.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222198.1.S1_at	A	A1TS	POPTR_2208s00200	POPTR_2208s00200 (10)	scaffold_2208:2476-3041(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222199.1.S1_at	A	A1TS	POPTR_0018s14480	POPTR_0018s14480 (11)	scaffold_18:14660449-14668124(-) (11)	NA	Q8SSJ5	Cell division control protein 48	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os03g05730.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_24.1	"AAA ATPase VAT, N-terminal; AAA ATPase AC235487.1 114563-118774 E EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.222199.1.S1_x_at	A	A1TS	POPTR_0018s14480	POPTR_0018s14480 (11)	scaffold_18:14660449-14668124(-) (11)	NA	Q8SSJ5	Cell division control protein 48	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os03g05730.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_24.1	"AAA ATPase VAT, N-terminal; AAA ATPase AC235487.1 114563-118774 E EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.22220.2.A1_s_at	A	A1TS	POPTR_0008s15920	POPTR_0008s15920 (11)	scaffold_8:10622476-10623013(-) (11)	NA	P23525	"37 kDa inner envelope membrane protein, chloroplastic"	AT3G63410.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g08200.1	"methyltransferase domain containing protein, putative, expressed"	Medtr1g083540.1	"37 kDa inner envelope membrane protein, chloroplast precursor, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.222200.1.S1_s_at	A	A4TS	POPTR_0018s05910	POPTR_0018s05960 (11)//POPTR_0018s05930 (11)//POPTR_0018s05910 (11)//POPTR_1811s00200 (11)	scaffold_18:5539276-5539630(+) (11)//scaffold_18:5561953-5562307(+) (11)//scaffold_18:5591281-5591635(+) (11)//scaffold_1811:4192-4546(+) (11)	NA	NA	NA	AT3G22440.1	FRIGIDA-like protein 	LOC_Os07g07680.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222202.1.S1_s_at	A	A1TS	POPTR_0013s13300	POPTR_0013s13300 (11)	scaffold_13:13822049-13823631(-) (11)	NA	Q9Y5Q9	General transcription factor 3C polypeptide 3	AT1G17680.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os11g16540.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr4g101240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222203.1.S1_at	A	A1TS	POPTR_0944s00200	POPTR_0944s00200 (11)	scaffold_944:1442-1647(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222204.1.S1_at	A	A1MS	POPTR_0001s30940	POPTR_0001s30940 (9)	scaffold_1:29363237-29365115(-) (11)	NA	Q8T9S7	"Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN"	AT3G19420.1	PTEN 2 	LOC_Os12g21890.1	"PTEN, putative, expressed"	Medtr5g016480.1	"Dual specificity protein phosphatase; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222205.1.S1_at	A	A3TS	POPTR_0019s08770	POPTR_0019s08770 (11)//POPTR_0019s08810 (11)//POPTR_0019s08830 (11)	scaffold_19:10300193-10300231(-) (11)//scaffold_19:10352641-10352679(-) (11)//scaffold_19:10374976-10375014(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.222205.1.S1_x_at	A	A3TS	POPTR_0019s08770	POPTR_0019s08770 (11)//POPTR_0019s08810 (11)//POPTR_0019s08830 (11)	scaffold_19:10300193-10300311(-) (11)//scaffold_19:10336144-10352673(-) (11)//scaffold_19:10374976-10375094(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.222206.1.S1_at	A	A1TS	POPTR_0019s08850	POPTR_0019s08850 (10)	scaffold_1470:5278-5454(+) (11)//scaffold_19:10328497-10328673(+) (11)//scaffold_19:10345126-10345275(+) (10)//scaffold_19:10385313-10385489(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222207.1.S1_at	A	A2MS	POPTR_0019s08820	POPTR_0019s08820 (9)//POPTR_1470s00200 (9)	scaffold_1470:4229-4674(-) (9)//scaffold_19:10366403-10366847(-) (9)//scaffold_19:10384265-10384710(-) (10)	POPTR_0019s08790 (8)//POPTR_0019s08910 (7)	Q149N8	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076790.1	"Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.222208.1.S1_at	A	A1TS	POPTR_0017s06950	POPTR_0017s06950 (11)	scaffold_17:5339714-5340203(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222210.1.S1_at	A	A1TS	POPTR_0017s06940	POPTR_0017s06940 (11)	scaffold_17:5332146-5332631(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G54010.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g27370.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g109040.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222211.1.S1_at	A	A1TS	POPTR_0017s06900	POPTR_0017s06900 (11)	scaffold_17:5280495-5281047(+) (11)	NA	Q9SN22	Scarecrow-like protein 32	AT3G49950.1	GRAS family transcription factor 	LOC_Os05g42130.1	"MONOCULM 1, putative, expressed"	Medtr2g103380.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222212.1.S1_at	A	A1TS	POPTR_0017s06890	POPTR_0017s06890 (11)	scaffold_17:5260787-5261118(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222213.1.S1_at	A	A1TS	POPTR_0017s06880	POPTR_0017s06880 (11)	scaffold_17:5258770-5259616(+) (11)	NA	NA	NA	AT1G11480.1	eukaryotic translation initiation factor-related 	LOC_Os07g36200.1	"eukaryotic translation initiation factor-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222214.1.S1_at	A	A1TS	POPTR_0017s06860	POPTR_0017s06860 (11)	scaffold_17:5227558-5227994(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.222215.1.S1_at	A	A1TS	POPTR_0017s06820	POPTR_0017s06820 (11)	scaffold_17:5202107-5202684(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g103440.1	"Formin-1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222216.1.S1_s_at	A	A3TS	POPTR_0017s06710	POPTR_0017s06810 (11)//POPTR_0017s06710 (11)//POPTR_0017s06800 (11)	scaffold_17:5129346-5129552(-) (11)//scaffold_17:5188514-5188720(+) (11)//scaffold_17:5192134-5192340(+) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os12g21850.1	"OsMADS73 - MADS-box family gene with M-alpha type-box, expressed"	AC233655_14.1	"Transcription factor, MADS-box; AAA-protein subdomain AC233655.2 100109-101295 H EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.22222.1.A1_at	A	A1TS	POPTR_0007s06570	POPTR_0007s06570 (11)	scaffold_7:4978197-4978580(-) (11)	NA	O65012	Cytochrome P450 78A4	AT5G09970.1	"cytochrome P450, family 78, subfamily A, polypeptide 7 "	LOC_Os10g26340.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.22222.2.A1_at	A	A1TA	POPTR_0007s06570	POPTR_0007s06570 (11)	scaffold_7:4979400-4979836(+) (11)	NA	O65012	Cytochrome P450 78A4	AT5G09970.1	"cytochrome P450, family 78, subfamily A, polypeptide 7 "	LOC_Os10g26340.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.222220.1.S1_at	A	A1TS	POPTR_0017s06740	POPTR_0017s06740 (11)	scaffold_17:5149142-5149675(+) (11)	NA	NA	NA	AT4G23240.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 16 	NA	NA	Medtr2g011240.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222222.1.S1_at	A	A1TS	POPTR_0017s06690	POPTR_0017s06690 (11)	scaffold_17:5123367-5124015(+) (11)	NA	NA	NA	AT1G05280.1	Protein of unknown function (DUF604) 	LOC_Os08g04300.1	"fringe-related protein, putative, expressed"	Medtr2g103540.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222223.1.S1_at	A	A1MS	POPTR_0017s06680	POPTR_0017s06680 (9)	scaffold_17:5119013-5119601(+) (9)	NA	NA	NA	AT4G15240.1	Protein of unknown function (DUF604) 	LOC_Os08g04300.1	"fringe-related protein, putative, expressed"	Medtr2g103540.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222224.1.S1_at	A	A1TS	POPTR_0017s06660	POPTR_0017s06660 (9)	scaffold_17:5106052-5107068(+) (9)	NA	Q9LJ44	Zinc finger protein CONSTANS-LIKE 12	AT3G21880.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g19444.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr2g103590.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.222225.1.S1_at	A	A1TS	POPTR_0017s06650	POPTR_0017s06650 (11)	scaffold_17:5093266-5093848(-) (11)	NA	Q11011	Puromycin-sensitive aminopeptidase	AT4G33090.1	aminopeptidase M1 	LOC_Os08g30810.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.222227.1.S1_at	A	A1TS	POPTR_0017s06640	POPTR_0017s06640 (11)	scaffold_17:5079050-5080156(+) (11)	NA	Q869L3	Midasin	AT1G67120.1	ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding 	LOC_Os10g31864.1	conserved hypothetical protein	Medtr8g021940.1	Aldo/keto reductase; AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.222228.1.S1_at	A	A1TS	POPTR_0017s06630	POPTR_0017s06630 (11)	scaffold_17:5035840-5036631(-) (11)	NA	Q55B06	SPX and EXS domain-containing protein 1	AT5G35730.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os12g40340.1	"EXS family protein, putative, expressed"	Medtr7g084230.1	"EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.222228.1.S1_s_at	A	A1TS	POPTR_0017s06630	POPTR_0017s06630 (11)	scaffold_17:5035283-5035468(-) (11)	NA	Q55B06	SPX and EXS domain-containing protein 1	AT5G35730.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os12g40340.1	"EXS family protein, putative, expressed"	Medtr7g084230.1	"EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.222229.1.S1_at	A	A1TS	POPTR_0017s06610	POPTR_0017s06610 (11)	scaffold_17:5014511-5015993(-) (11)	NA	Q5PP37	Histone-lysine N-methyltransferase ATXR2	AT3G21820.1	histone-lysine N-methyltransferase ATXR2 	LOC_Os04g53700.1	"zinc finger protein, putative, expressed"	Medtr2g103680.1	"Histone-lysine N-methyltransferase ATXR2, putative "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.222230.1.S1_at	A	A1TS	POPTR_0017s06600	POPTR_0017s06600 (11)	scaffold_17:5008324-5009098(-) (11)	NA	Q58DF3	TraB domain-containing protein	AT1G05270.1	TraB family protein 	LOC_Os05g42010.1	"TraB family protein, putative, expressed"	Medtr6g059350.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222231.1.S1_at	A	A1MA	POPTR_0017s06600	POPTR_0017s06600 (10)	scaffold_17:5007585-5007938(+) (10)	NA	Q58DF3	TraB domain-containing protein	AT1G05270.1	TraB family protein 	LOC_Os05g42010.1	"TraB family protein, putative, expressed"	Medtr6g059350.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222234.1.S1_at	A	A1TS	POPTR_0017s06530	POPTR_0017s06530 (11)	scaffold_17:4970913-4971469(-) (11)	NA	P0CG70	Polyubiquitin	AT2G32350.1	Ubiquitin-like superfamily protein 	LOC_Os04g53620.2	"ubiquitin family protein, putative, expressed"	Medtr2g103710.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222235.1.S1_at	A	A1TS	POPTR_0017s06490	POPTR_0017s06490 (11)	scaffold_17:4965507-4966016(+) (11)	NA	Q9LSZ0	"APO protein 4, mitochondrial"	AT3G21740.1	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os04g53612.1	"APO, putative, expressed"	Medtr2g103720.1	"Protein of unknown function DUF794, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222236.1.S1_at	A	A1TS	POPTR_0017s06440	POPTR_0017s06440 (11)	scaffold_17:4939739-4940119(+) (11)	NA	Q9FND9	Probable galactinol--sucrose galactosyltransferase 5	AT5G40390.1	Raffinose synthase family protein 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr3g114540.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222238.1.S1_at	A	A1TS	POPTR_0017s06420	POPTR_0017s06420 (9)	scaffold_17:4922974-4924157(+) (9)	NA	Q5G1S8	"Pentatricopeptide repeat-containing protein At3g18110, chloroplastic"	AT3G18110.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g09880.1	"EMB1270, putative, expressed"	Medtr5g008360.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222239.1.S1_at	A	A1TS	POPTR_0017s06400	POPTR_0017s06400 (11)	scaffold_17:4899410-4900418(-) (11)	NA	O42260	Survival of motor neuron protein-interacting protein 1	AT1G54380.1	spliceosome protein-related 	LOC_Os11g18830.1	"survival motor neuron containing protein, expressed"	Medtr1g146850.1	Survival motor neuron interacting protein 1 	GO:0000245|spliceosome assembly||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.222240.1.S1_at	A	A1TS	POPTR_0017s06390	POPTR_0017s06390 (11)	scaffold_17:4897177-4897888(-) (11)	NA	NA	NA	AT1G58210.1	kinase interacting family protein 	LOC_Os04g28040.1	expressed protein	Medtr5g040960.1	SANT associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222243.1.S1_at	A	A1TS	POPTR_0017s06360	POPTR_0017s06360 (11)	scaffold_17:4882571-4882880(+) (11)	NA	A4IHW3	Probable UDP-sugar transporter protein SLC35A4	AT3G59360.2	UDP-galactose transporter 6 	LOC_Os02g39200.1	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr1g146890.1	Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
PtpAffx.222246.1.S1_at	A	A1TS	POPTR_0017s06190	POPTR_0017s06190 (11)	scaffold_17:4795558-4796286(+) (11)	NA	Q4KMD3	U11/U12 small nuclear ribonucleoprotein 35 kDa protein	AT2G43370.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g33870.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g093350.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.222247.1.S1_at	A	A1TS	POPTR_0017s06180	POPTR_0017s06180 (11)	scaffold_17:4789100-4790336(-) (11)	NA	P54967	Biotin synthase	AT2G43360.1	Radical SAM superfamily protein 	LOC_Os08g42730.1	"radical SAM enzyme, putative, expressed"	Medtr4g104400.1	Biotin and thiamin synthesis associated 	GO:0044283|small molecule biosynthetic process||GO:0009102|biotin biosynthetic process||GO:0044281|small molecule metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0004076|biotin synthase activity	NA
PtpAffx.222248.1.S1_at	A	A1TS	POPTR_0017s06170	POPTR_0017s06170 (11)	scaffold_17:4784644-4786145(+) (11)	NA	P41252	"Isoleucyl-tRNA synthetase, cytoplasmic"	AT4G10320.1	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os06g43760.1	"tRNA synthetase class I, putative, expressed"	Medtr4g104390.1	"Aminoacyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.222248.1.S1_s_at	A	A1TS	POPTR_0017s06170	POPTR_0017s06170 (11)	scaffold_17:4784672-4786192(+) (11)	POPTR_0007s02170 (6)	P41252	"Isoleucyl-tRNA synthetase, cytoplasmic"	AT4G10320.1	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os06g43760.1	"tRNA synthetase class I, putative, expressed"	Medtr4g104390.1	"Aminoacyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.222249.1.S1_at	A	A1TS	POPTR_0017s06150	POPTR_0017s06150 (11)	scaffold_17:4767761-4768339(+) (11)	NA	Q9LSL9	Pentatricopeptide repeat-containing protein At5g65560	AT5G65560.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g05920.1	"Rf1, mitochondrial precursor, putative, expressed"	Medtr7g093360.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222251.1.S1_at	A	A1MS	POPTR_0017s06040	POPTR_0017s06040 (9)	scaffold_17:4685583-4685731(+) (9)	NA	Q9SIQ7	Calcium-dependent protein kinase 24	AT2G31500.1	calcium-dependent protein kinase 24 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g031920.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222251.1.S1_x_at	A	A1MS	POPTR_0017s06040	POPTR_0017s06040 (9)	scaffold_17:4685583-4685731(+) (9)	NA	Q9SIQ7	Calcium-dependent protein kinase 24	AT2G31500.1	calcium-dependent protein kinase 24 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g031920.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222253.1.S1_at	A	A1TS	POPTR_0017s06030	POPTR_0017s06030 (11)	scaffold_17:4678502-4679675(-) (11)	NA	O22243	Zinc finger CCCH domain-containing protein 31	AT2G47680.1	zinc finger (CCCH type) helicase family protein 	LOC_Os01g15300.1	"zinc finger helicase family protein, putative, expressed"	Medtr1g108430.1	"Zinc finger, CCCH-type; Beta-lactamase, class A; Helicase, C-terminal; "	NA	GO:0008270|zinc ion binding||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.222254.1.S1_at	A	A1TS	POPTR_0017s06030	POPTR_0017s06030 (11)	scaffold_17:4674927-4675634(-) (11)	NA	O22243	Zinc finger CCCH domain-containing protein 31	AT2G47680.1	zinc finger (CCCH type) helicase family protein 	LOC_Os01g15300.1	"zinc finger helicase family protein, putative, expressed"	Medtr1g108430.1	"Zinc finger, CCCH-type; Beta-lactamase, class A; Helicase, C-terminal; "	NA	GO:0008270|zinc ion binding||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.222255.1.S1_at	A	A1TS	POPTR_0017s06000	POPTR_0017s06000 (11)	scaffold_17:4643550-4643839(-) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT2G33480.1	NAC domain containing protein 41 	LOC_Os06g01480.1	"NAC domain containing protein, putative, expressed"	Medtr5g084760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.222255.1.S1_s_at	A	A2TS	POPTR_0017s05970	POPTR_0017s06000 (11)//POPTR_0017s05970 (11)	scaffold_17:4612644-4613293(+) (11)//scaffold_17:4622159-4622387(+) (9)//scaffold_17:4643379-4644028(-) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g01480.1	"NAC domain containing protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.222256.1.S1_at	A	A1MS	POPTR_0017s05990	POPTR_0017s05990 (10)	scaffold_17:4636156-4636682(-) (11)	NA	Q9ULI0	ATPase family AAA domain-containing protein 2B	AT1G05910.1	cell division cycle protein 48-related / CDC48-related 	LOC_Os09g33980.1	"bromodomain protein 103, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222257.1.S1_s_at	A	A3TS	POPTR_0017s05960	POPTR_0017s05980 (11)//POPTR_0017s05990 (11)//POPTR_0017s05960 (11)	scaffold_17:4603281-4604091(+) (11)//scaffold_17:4619732-4620542(+) (11)//scaffold_17:4636051-4636864(-) (11)	NA	Q9ULI0	ATPase family AAA domain-containing protein 2B	AT1G05910.1	cell division cycle protein 48-related / CDC48-related 	LOC_Os09g33980.1	"bromodomain protein 103, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.222262.1.S1_at	A	A1MS	POPTR_0017s05950	POPTR_0017s05950 (10)	scaffold_17:4593028-4594036(+) (10)	NA	NA	NA	AT1G05960.1	ARM repeat superfamily protein 	LOC_Os01g67290.1	"cyclin-related protein, putative, expressed"	Medtr2g118260.1	"cyclin-related protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222263.1.S1_at	A	A1TS	POPTR_0017s05870	POPTR_0017s05870 (9)	scaffold_17:4561215-4562518(+) (11)	NA	NA	NA	AT3G59430.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222264.1.S1_at	A	A1TS	POPTR_0017s05870	POPTR_0017s05870 (11)	scaffold_17:4559427-4560127(+) (11)	NA	NA	NA	AT3G59430.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222265.1.S1_at	A	A1TS	POPTR_0017s05850	POPTR_0017s05850 (11)	scaffold_17:4546020-4547688(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g118460.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222266.1.S1_at	A	A1TS	POPTR_0017s05840	POPTR_0017s05840 (11)	scaffold_17:4541392-4541771(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g118460.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222267.1.S1_at	A	A1TS	POPTR_0017s05830	POPTR_0017s05830 (11)	scaffold_17:4537462-4537993(-) (11)	NA	Q39008	Mitogen-activated protein kinase kinase kinase 1	AT4G08500.1	MAPK/ERK kinase kinase 1 	LOC_Os03g49640.2	"STE_MEKK_ste11_MAP3K.14 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g098410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222269.1.S1_at	A	A1TS	POPTR_0017s05820	POPTR_0017s05820 (11)	scaffold_17:4531197-4532072(-) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT2G43280.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g50900.1	"transposon protein, putative, unclassified, expressed"	Medtr7g046760.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222270.1.S1_x_at	A	A1TS	POPTR_0017s05800	POPTR_0017s05800 (11)	scaffold_17:4526563-4526965(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222271.1.S1_at	A	A1TS	POPTR_0017s05790	POPTR_0017s05790 (11)	scaffold_17:4521608-4522941(+) (11)	NA	A7SXZ6	Probable O-sialoglycoprotein endopeptidase	AT4G22720.2	Actin-like ATPase superfamily protein 	LOC_Os05g10630.1	"O-sialoglycoprotein endopeptidase, putative, expressed"	Medtr4g025830.1	"Peptidase M22, glycoprotease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.222272.1.S1_at	A	A1TS	POPTR_0017s05750	POPTR_0017s05750 (11)	scaffold_17:4492445-4493577(+) (11)	NA	O48593	"Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial"	AT4G17300.1	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os07g30200.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr8g105750.1	"Aspartyl-tRNA synthetase bacterial/mitochondrial type; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.222274.1.S1_s_at	A	A2TS	POPTR_0017s05730	POPTR_0017s05730 (11)//POPTR_0017s05710 (9)	scaffold_17:4470369-4470786(+) (11)//scaffold_17:4483668-4484085(+) (11)	NA	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT3G59510.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g43250.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr2g118400.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.222276.1.S1_s_at	A	A1TS	POPTR_0017s05660	POPTR_0017s05660 (11)	scaffold_17:4435231-4435740(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g111350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222277.1.S1_at	A	A1TS	POPTR_0017s05630	POPTR_0017s05630 (11)	scaffold_17:4416785-4417323(-) (11)	NA	B5X3B2	Adipocyte plasma membrane-associated protein	AT3G59530.2	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g15710.1	"strictosidine synthase, putative, expressed"	Medtr2g118410.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.222278.1.S1_at	A	A1TS	POPTR_0017s05610	POPTR_0017s05610 (10)	scaffold_17:4401726-4403862(+) (10)	NA	Q04088	Probable transcription factor PosF21	AT1G06070.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os09g34060.1	"transcription factor RF2a, putative, expressed"	Medtr2g118430.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.22228.2.S1_at	A	A1TS	POPTR_0010s11980	POPTR_0010s11980 (11)	scaffold_10:12098475-12098981(-) (11)	NA	Q00423	HMG-Y-related protein A	AT1G14900.1	high mobility group A 	LOC_Os08g33190.1	"linker histone H1 and H5 family protein, expressed"	Medtr5g086060.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.22228.3.S1_s_at	A	A1TS	POPTR_0008s13170	POPTR_0008s13170 (11)	scaffold_8:8615280-8615722(+) (11)	NA	Q00423	HMG-Y-related protein A	AT1G14900.1	high mobility group A 	LOC_Os08g33190.1	"linker histone H1 and H5 family protein, expressed"	Medtr5g086060.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.222280.1.S1_at	A	A1MS	POPTR_2535s00200	POPTR_2535s00200 (9)	scaffold_2535:1452-1530(+) (9)	NA	Q8LPQ9	Flowering time control protein FPA	AT2G43410.4	RNA binding 	LOC_Os09g34070.2	"RNA recognition motif containing protein, expressed"	Medtr4g092490.1	RNA-binding region RNP-1 (RNA recognition motif); SPOC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222280.1.S1_s_at	A	A1TS	POPTR_2535s00200	POPTR_2535s00200 (11)	scaffold_2535:1295-1834(+) (11)	NA	Q8LPQ9	Flowering time control protein FPA	AT2G43410.4	RNA binding 	LOC_Os09g34070.2	"RNA recognition motif containing protein, expressed"	Medtr4g092490.1	RNA-binding region RNP-1 (RNA recognition motif); SPOC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222281.1.S1_at	A	A1TS	POPTR_0017s05500	POPTR_0017s05500 (11)	scaffold_17:4357808-4357935(+) (11)	NA	Q8LDW8	"Probable hydroxyacylglutathione hydrolase 2, chloroplast"	AT1G06130.2	glyoxalase 2-4 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222282.1.S1_at	A	A1TS	POPTR_0017s05470	POPTR_0017s05470 (11)	scaffold_17:4329085-4330264(+) (11)	NA	Q9LTR2	"Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic"	AT3G20320.1	trigalactosyldiacylglycerol2 	LOC_Os01g74280.1	"TGD2, putative, expressed"	Medtr5g095460.1	Mammalian cell entry related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222282.1.S1_x_at	A	A1TS	POPTR_0017s05470	POPTR_0017s05470 (11)	scaffold_17:4329089-4330264(+) (11)	NA	Q9LTR2	"Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic"	AT3G20320.1	trigalactosyldiacylglycerol2 	LOC_Os01g74280.1	"TGD2, putative, expressed"	Medtr5g095460.1	Mammalian cell entry related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222284.1.S1_at	A	A1TS	POPTR_0017s05450	POPTR_0017s05450 (11)	scaffold_17:4310038-4310558(+) (11)	NA	Q9SZF7	Protein SHORT-ROOT	AT4G37650.1	GRAS family transcription factor 	LOC_Os07g39820.1	"SHR, putative, expressed"	Medtr5g015580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222285.1.S1_at	A	A1TS	POPTR_0017s05440	POPTR_0017s05440 (11)	scaffold_17:4300343-4300525(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222286.1.S1_at	A	A1MS	POPTR_0017s05430	POPTR_0017s05430 (11)	scaffold_17:4298097-4298143(+) (11)	NA	NA	NA	AT2G43465.1	RNA-binding ASCH domain protein 	LOC_Os11g16420.1	"protein of unknown function containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222286.1.S1_x_at	A	A1MS	POPTR_0017s05430	POPTR_0017s05430 (11)	scaffold_17:4297348-4298143(+) (11)	NA	NA	NA	AT2G43465.1	RNA-binding ASCH domain protein 	LOC_Os11g16420.1	"protein of unknown function containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222287.1.S1_x_at	A	A1TS	POPTR_0048s00275	POPTR_0048s00275 (11)	scaffold_17:4295107-4295252(+) (11)//scaffold_48:162727-162872(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g148000.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222289.1.S1_at	A	A1TS	POPTR_0017s05390	POPTR_0017s05390 (11)	scaffold_17:4278315-4278826(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222290.1.S1_at	A	A1TS	POPTR_0017s05330	POPTR_0017s05330 (11)	scaffold_17:4198087-4198270(+) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g10420.1	"transferase family domain containing protein, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.222290.1.S1_s_at	A	A2TS	POPTR_0017s04320	POPTR_0017s05330 (11)//POPTR_0017s04320 (11)	scaffold_17:3343797-3343881(+) (11)//scaffold_17:4197869-4197953(+) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g10420.1	"transferase family domain containing protein, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.222291.1.S1_at	A	A1TS	POPTR_0017s05260	POPTR_0017s05260 (11)	scaffold_17:4138450-4139181(+) (11)	POPTR_0017s05340 (7)	NA	NA	AT3G60470.1	Plant protein of unknown function (DUF247) 	NA	NA	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222293.1.S1_x_at	A	A3TS	POPTR_0017s05230	POPTR_0017s05230 (11)//POPTR_0005s17490 (10)//POPTR_0011s01820 (10)	scaffold_11:1436582-1437000(-) (10)//scaffold_17:4050523-4050941(-) (11)//scaffold_5:15026218-15026636(+) (10)	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222295.1.S1_at	A	A1TS	POPTR_0017s05190	POPTR_0017s05190 (11)	scaffold_17:3986592-3987786(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222296.1.S1_at	A	A2TS	POPTR_0017s05180	POPTR_0017s05180 (11)//POPTR_0048s00230 (11)	scaffold_17:3984192-3984976(+) (11)//scaffold_48:48935-49719(+) (11)	NA	NA	NA	AT5G67550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71110.1); Has 161 Blast hits to 154 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g16310.1	expressed protein	Medtr5g015520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222297.1.S1_at	A	A1TS	POPTR_0017s05160	POPTR_0017s05160 (9)	scaffold_17:3957078-3958060(+) (9)	POPTR_0048s00220 (7)	Q2NKQ1	Small G protein signaling modulator 1	AT2G43490.6	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g01010.1	"TBC domain containing protein, expressed"	Medtr2g097180.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.222300.1.S1_at	A	A2MS	POPTR_0017s05070	POPTR_0017s05070 (11)//POPTR_0048s00200 (10)	scaffold_17:3915260-3915303(+) (11)//scaffold_48:1968-2011(+) (10)//scaffold_48:10474-10517(-) (10)	NA	Q9M1B0	Protein NLP9	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.222300.1.S1_x_at	A	A2MS	POPTR_0017s05070	POPTR_0017s05070 (11)//POPTR_0048s00200 (10)	scaffold_17:3914600-3915303(+) (11)//scaffold_48:1310-2011(+) (10)	NA	Q9M1B0	Protein NLP9	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.222301.1.S1_x_at	A	A1TS	POPTR_0047s00300	POPTR_0047s00300 (11)	scaffold_47:144197-144388(-) (11)	POPTR_0017s09490 (7)	O22864	Protein NLP8	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222303.1.S1_s_at	A	A2TS	POPTR_0002s04210	POPTR_0002s04210 (11)//POPTR_0047s00280 (11)	scaffold_2:2633783-2633918(-) (11)//scaffold_47:134794-134929(-) (11)	NA	Q9SLB7	LOB domain-containing protein 16	AT2G42430.1	lateral organ boundaries-domain 16 	LOC_Os08g44940.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222305.1.S1_s_at	A	A2TS	POPTR_0017s05090	POPTR_0047s00260 (11)//POPTR_0017s05090 (11)	scaffold_17:3884446-3884769(-) (9)//scaffold_17:3922934-3926081(-) (11)//scaffold_17:3947956-3948295(-) (9)//scaffold_17:8112295-8112649(-) (10)//scaffold_47:123547-123901(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222307.1.S1_s_at	A	A2TS	POPTR_0017s05010	POPTR_0017s09470 (11)//POPTR_0017s05010 (11)	scaffold_17:3864479-3864732(-) (11)//scaffold_17:8092810-8093063(-) (11)	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr5g101930.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222308.1.S1_s_at	A	A2TS	POPTR_0017s04990	POPTR_0047s00200 (11)//POPTR_0017s04990 (11)	scaffold_17:3846043-3846090(-) (11)//scaffold_47:13780-13827(-) (11)//scaffold_47:75196-75243(-) (11)	NA	Q6EI05	DELLA protein GAIP-B	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0003677|DNA binding	NA
PtpAffx.222310.1.S1_at	A	A1TS	POPTR_0017s04980	POPTR_0017s04980 (11)	scaffold_17:3821477-3821529(-) (11)	NA	O22864	Protein NLP8	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222311.1.S1_at	A	A1TS	POPTR_0017s04960	POPTR_0017s04960 (11)	scaffold_17:3808089-3809640(+) (11)	NA	NA	NA	AT5G40520.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; Has 3696 Blast hits to 2485 proteins in 391 species: Archae - 10; Bacteria - 571; Metazoa - 1013; Fungi - 530; Plants - 217; Viruses - 74; Other Eukaryotes - 1281 (source: NCBI BLink). 	LOC_Os09g01600.4	expressed protein	Medtr4g092620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222312.1.S1_at	A	A1TS	POPTR_0017s04940	POPTR_0017s04940 (11)	scaffold_17:3793268-3793447(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009405|pathogenesis||GO:0051704|multi-organism process	GO:0003674|molecular_function||GO:0008200|ion channel inhibitor activity	GO:0005576|extracellular region
PtpAffx.222313.1.S1_at	A	A1TS	POPTR_0017s04930	POPTR_0017s04930 (11)	scaffold_17:3789247-3790003(+) (11)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT2G30700.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 68 Blast hits to 67 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g38980.1	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222314.1.S1_at	A	A1TS	POPTR_0017s04910	POPTR_0017s04910 (11)	scaffold_17:3776828-3777425(+) (11)	NA	NA	NA	AT4G04885.1	PCF11P-similar protein 4 	LOC_Os08g08830.1	expressed protein	Medtr4g098610.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222315.1.S1_at	A	A1TS	POPTR_0017s04900	POPTR_0017s04900 (11)	scaffold_17:3772950-3773465(+) (11)	NA	O94653	Ribosome biogenesis protein BMS1 homolog	AT1G06720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g21530.1	"AARP2CN domain containing protein, expressed"	Medtr4g092630.2	AARP2CN 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
PtpAffx.222316.1.S1_at	A	A1TS	POPTR_0017s04890	POPTR_0017s04890 (11)	scaffold_17:3759355-3760262(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os03g51110.1	"MYB family transcription factor, putative, expressed"	Medtr6g078130.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222317.1.S1_s_at	A	A1TS	POPTR_0017s04880	POPTR_0017s04880 (11)	scaffold_17:3752729-3754849(+) (11)	NA	O22870	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplastic"	AT2G43560.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g42850.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g092670.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.222318.1.S1_at	A	A1TS	POPTR_0017s04830	POPTR_0017s04830 (11)	scaffold_17:3721938-3722161(-) (11)	NA	Q9H867	Uncharacterized protein C14orf138	AT5G44170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g48950.2	expressed protein	Medtr6g083940.1	"Protein FAM119A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222318.1.S1_s_at	A	A1TS	POPTR_0017s04830	POPTR_0017s04830 (11)	scaffold_17:3722036-3722462(-) (11)	NA	Q9H867	Uncharacterized protein C14orf138	AT5G44170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g48950.2	expressed protein	Medtr6g083940.1	"Protein FAM119A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222319.1.S1_at	A	A1TS	POPTR_0017s04820	POPTR_0017s04820 (10)	scaffold_17:3716983-3717477(+) (11)	NA	Q9FN29	Homeobox-leucine zipper protein ATHB-52	AT5G53980.1	homeobox protein 52 	LOC_Os02g49700.3	"homeobox associated leucine zipper, putative, expressed"	Medtr8g113090.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.222320.1.S1_at	A	A1TS	POPTR_0017s04810	POPTR_0017s04810 (11)	scaffold_17:3706094-3706419(-) (11)	NA	Q9H0R5	Guanylate-binding protein 3	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.222321.1.S1_at	A	A1TS	POPTR_0017s04800	POPTR_0017s04800 (11)	scaffold_17:3704408-3704720(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.222321.1.S1_x_at	A	A1TS	POPTR_0017s04800	POPTR_0017s04800 (11)	scaffold_17:3704370-3704717(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.222322.1.S1_at	A	A1TS	POPTR_0017s04790	POPTR_0017s04790 (11)	scaffold_17:3696674-3696812(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT1G28440.1	HAESA-like 1 	LOC_Os01g13800.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr2g018130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.222322.1.S1_s_at	A	A1TS	POPTR_0017s04790	POPTR_0017s04790 (11)	scaffold_17:3697002-3697255(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT1G28440.1	HAESA-like 1 	LOC_Os01g13800.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr2g018130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.222324.1.S1_at	A	A1TS	POPTR_0017s04770	POPTR_0017s04770 (11)	scaffold_17:3673733-3674211(-) (11)	NA	NA	NA	AT4G18425.1	Protein of unknown function (DUF679) 	LOC_Os05g48840.1	expressed protein	Medtr4g108640.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222325.1.S1_at	A	A1TS	POPTR_0017s04760	POPTR_0017s04760 (11)	scaffold_17:3653152-3653442(-) (11)	NA	NA	NA	AT5G44180.1	Homeodomain-like transcriptional regulator 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr4g108880.1	hypothetical protein 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.222325.1.S1_x_at	A	A1TS	POPTR_0017s04760	POPTR_0017s04760 (11)	scaffold_17:3653152-3653689(-) (11)	NA	NA	NA	AT5G44180.1	Homeodomain-like transcriptional regulator 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr4g108880.1	hypothetical protein 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.222326.1.S1_at	A	A1TS	POPTR_0017s04730	POPTR_0017s04730 (11)	scaffold_17:3641449-3641930(+) (11)	NA	NA	NA	AT2G20562.1	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11600.1	conserved hypothetical protein	Medtr4g109490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222327.1.S1_x_at	A	A1TS	POPTR_0017s04720	POPTR_0017s04720 (11)	scaffold_17:3620806-3622081(-) (11)	NA	Q6LA43	Two-component response regulator-like APRR2	AT2G20570.1	GBF's pro-rich region-interacting factor 1 	LOC_Os06g24070.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr4g108850.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222329.1.S1_at	A	A1MS	POPTR_0017s04630	POPTR_0017s04630 (11)	scaffold_17:3541992-3542311(-) (11)	NA	NA	NA	AT2G20585.3	nuclear fusion defective 6 	NA	NA	Medtr4g108540.1	"NFD6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222330.1.S1_at	A	A1TS	POPTR_0017s04610	POPTR_0017s04610 (11)	scaffold_17:3535248-3536500(+) (11)	NA	Q8LDS3	Reticulon-like protein B18	AT4G28430.1	Reticulon family protein 	LOC_Os02g19990.2	"reticulon domain containing protein, putative, expressed"	Medtr4g108500.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.222331.1.S1_at	A	A1TS	POPTR_0017s04570	POPTR_0017s04570 (9)	scaffold_17:3520537-3520880(+) (9)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.222332.1.S1_s_at	A	A1TS	POPTR_0017s04510	POPTR_0017s04510 (11)	scaffold_17:3470839-3471240(+) (11)	NA	Q9ZWA1	Zinc finger CCCH domain-containing protein 2	AT1G03790.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g09620.2	"zinc finger/CCCH transcription factor, putative, expressed"	Medtr4g108400.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.222334.1.S1_at	A	A1TS	POPTR_0017s04460	POPTR_0017s04460 (11)	scaffold_17:3433180-3433457(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222336.1.S1_s_at	A	A1TS	POPTR_0017s04430	POPTR_0017s04430 (11)	scaffold_17:3413119-3414093(+) (11)	NA	P36096	Transmembrane E3 ubiquitin-protein ligase 1	AT4G28370.1	RING/U-box superfamily protein 	LOC_Os07g31850.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222337.1.S1_at	A	A1TS	POPTR_0017s04420	POPTR_0017s04420 (10)	scaffold_17:3402831-3404516(-) (11)	NA	Q54HG4	RNA polymerase II subunit 5-mediating protein homolog	AT1G03760.1	Prefoldin chaperone subunit family protein 	NA	NA	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.222338.1.S1_at	A	A1TS	POPTR_0017s04400	POPTR_0017s04400 (11)	scaffold_17:3398671-3399983(+) (11)	NA	Q9JIM3	Putative DNA repair and recombination protein RAD26-like	AT1G03750.1	switch 2 	LOC_Os05g15890.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr4g108250.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.222339.1.S1_at	A	A2TS	POPTR_0017s00610	POPTR_0017s00610 (10)//POPTR_0017s04370 (10)	scaffold_17:333950-334196(-) (10)//scaffold_17:3378003-3378249(+) (10)	NA	P84786	Ribosome-inactivating protein charybdin	NA	NA	LOC_Os01g06740.1	"ribosome inactivating protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0017148|negative regulation of translation	GO:0030598|rRNA N-glycosylase activity	NA
PtpAffx.222344.1.S1_at	A	A1MS	POPTR_0017s11260	POPTR_0017s11260 (11)	scaffold_17:10991650-10991759(+) (11)	POPTR_0017s11240 (7)//POPTR_0017s11250 (6)	Q9C952	Cleavage and polyadenylation specificity factor subunit 3-I	AT1G61010.3	cleavage and polyadenylation specificity factor 73-I 	LOC_Os03g63590.1	"metallo-beta-lactamase, putative, expressed"	Medtr2g006480.1	Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222344.1.S1_s_at	A	A2TS	POPTR_0017s11240	POPTR_0017s11250 (11)//POPTR_0017s11240 (11)	scaffold_17:10951276-10951668(+) (11)//scaffold_17:10965193-10965585(+) (11)//scaffold_17:10991272-10991664(+) (11)	POPTR_0017s11260 (7)	Q9C952	Cleavage and polyadenylation specificity factor subunit 3-I	AT1G61010.3	cleavage and polyadenylation specificity factor 73-I 	LOC_Os03g63590.1	"metallo-beta-lactamase, putative, expressed"	Medtr2g006480.1	Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222345.1.S1_at	A	A1TS	POPTR_0019s13130	POPTR_0019s13130 (11)	scaffold_19:14118491-14119170(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G24590.2	TCV-interacting protein 	LOC_Os09g38000.1	"no apical meristem protein, putative"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.222346.1.S1_s_at	A	A1TS	POPTR_0010s02620	POPTR_0010s02620 (9)	scaffold_10:3023312-3023544(+) (10)	NA	O22775	Putative glycosyltransferase 2	AT4G02500.1	UDP-xylosyltransferase 2 	LOC_Os03g18820.2	"glycosyltransferase, putative, expressed"	Medtr7g130450.1	Galactosyl transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222348.1.S1_s_at	A	A1MS	POPTR_0017s06240	POPTR_0017s06240 (11)	scaffold_17:4817580-4817889(+) (11)//scaffold_19:1751593-1751861(-) (10)//scaffold_27:141055-141364(-) (11)//scaffold_427:6878-7149(-) (10)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os10g01750.1	"retrotransposon protein, putative, unclassified"	Medtr3g076270.1	NB-ARC 	GO:0006915|apoptosis	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.222354.1.S1_s_at	A	A1TS	POPTR_1528s00200	POPTR_1528s00200 (11)	scaffold_1528:669-1020(+) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067490.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222358.1.S1_x_at	A	A1TS	POPTR_0016s11400	POPTR_0016s11400 (11)	scaffold_16:10252696-10253275(+) (11)	NA	Q6NLE0	F-box protein At5g41720	AT1G64290.1	F-box protein-related 	LOC_Os08g43530.1	OsFBX306 - F-box domain containing protein	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222359.1.S1_at	A	A1TS	POPTR_0008s18550	POPTR_0008s18550 (9)	scaffold_8:12521649-12521681(+) (9)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT1G74190.1	receptor like protein 15 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.22236.1.S1_s_at	A	A1TS	POPTR_0012s14480	POPTR_0012s14480 (11)	scaffold_12:14346368-14346818(-) (11)	NA	Q9LPC1	UDP-glucuronate 4-epimerase 2	AT1G02000.1	UDP-D-glucuronate 4-epimerase 2 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr4g025510.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.222360.1.S1_x_at	A	A1TS	POPTR_0008s18560	POPTR_0008s18560 (11)	scaffold_8:12527107-12527369(-) (11)	POPTR_0018s14190 (7)//POPTR_0018s14430 (7)	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222363.1.S1_s_at	A	A1TS	POPTR_0005s00830	POPTR_0005s00830 (11)	scaffold_5:383319-384539(+) (11)	NA	C0LGS2	Probable LRR receptor-like serine/threonine-protein kinase At4g36180	AT1G74170.1	receptor like protein 13 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.222364.1.S1_s_at	A	A1TS	POPTR_0002s04850	POPTR_0002s04850 (11)	scaffold_2:3073108-3074004(-) (11)	NA	Q9M1V3	Pentatricopeptide repeat-containing protein At3g63370	AT3G63370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g39410.1	"pentatricopeptide, putative, expressed"	Medtr1g083640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222367.1.S1_at	A	A1TS	POPTR_0019s09850	POPTR_0019s09850 (10)	scaffold_19:11455418-11456069(+) (11)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.222378.1.S1_at	A	A1MS	POPTR_0017s00440	POPTR_0017s00440 (10)	scaffold_17:146814-147530(+) (10)	NA	A8MQA3	Pentatricopeptide repeat-containing protein At4g21065	AT4G21065.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g05560.1	conserved hypothetical protein	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222379.1.S1_x_at	A	A1TS	POPTR_0014s00960	POPTR_0014s00960 (11)	scaffold_14:913403-913744(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222381.1.S1_at	A	A1MS	POPTR_0013s04930	POPTR_0013s04930 (11)	scaffold_13:3444410-3444965(+) (11)	POPTR_0013s04900 (6)	Q9SRT0	U-box domain-containing protein 9	AT3G07360.1	plant U-box 9 	LOC_Os02g28720.1	"spotted leaf 11, putative, expressed"	Medtr7g143240.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.222381.1.S1_x_at	A	A1MS	POPTR_0013s04930	POPTR_0013s04930 (11)	scaffold_13:3444417-3444993(+) (11)	POPTR_0013s04900 (7)	Q9SRT0	U-box domain-containing protein 9	AT3G07360.1	plant U-box 9 	LOC_Os02g28720.1	"spotted leaf 11, putative, expressed"	Medtr7g143240.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.222382.1.S1_at	A	A1MS	POPTR_0006s18890	POPTR_0006s18890 (11)	scaffold_6:17517031-17517124(-) (11)//scaffold_6:17632601-17632694(-) (11)	NA	O08560	Diacylglycerol kinase zeta	AT4G30340.1	diacylglycerol kinase 7 	LOC_Os02g54650.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.222386.1.S1_at	A	A1TS	POPTR_0437s00210	POPTR_0437s00210 (10)	scaffold_437:5401-5990(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g075860.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222386.1.S1_s_at	A	A2TS	POPTR_0016s13120	POPTR_0016s13120 (11)//POPTR_0016s13140 (9)	scaffold_16:12390400-12390901(+) (11)//scaffold_16:12401621-12402122(+) (9)	POPTR_0437s00210 (7)	NA	NA	AT2G01570.1	GRAS family transcription factor family protein 	NA	NA	Medtr7g075860.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222389.1.S1_at	A	A1TS	POPTR_0003s22250	POPTR_0003s22250 (11)	scaffold_3:20092766-20094883(-) (11)	NA	NA	NA	AT4G12070.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g48640.1	expressed protein	Medtr2g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222391.1.S1_at	A	A1TS	POPTR_0003s22220	POPTR_0003s22220 (11)	scaffold_3:19084831-19084998(-) (9)//scaffold_3:20084222-20084389(-) (11)//scaffold_3:20193190-20193338(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222392.1.S1_at	A	A1TS	POPTR_0108s00240	POPTR_0108s00240 (11)	scaffold_108:37134-38844(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g009850.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222402.1.S1_at	A	A1TS	POPTR_0011s02800	POPTR_0011s02800 (11)	scaffold_11:2737051-2737546(-) (11)	POPTR_0015s06460 (8)//POPTR_0007s10800 (7)	NA	NA	NA	NA	LOC_Os01g42170.1	zinc knuckle family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222403.1.S1_at	A	A1MS	POPTR_0015s06450	POPTR_0015s06450 (9)	scaffold_11:2733528-2734458(-) (11)//scaffold_15:7249912-7250841(-) (9)	NA	NA	NA	NA	NA	LOC_Os05g34200.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222408.1.S1_at	A	A1TS	POPTR_0018s00470	POPTR_0018s00470 (11)	scaffold_18:409813-409909(+) (11)//scaffold_18:429051-429139(+) (10)	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr2g122680.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.222408.1.S1_s_at	A	A1TS	POPTR_0018s00470	POPTR_0018s00470 (11)	scaffold_18:369784-370310(+) (11)//scaffold_18:409435-409959(+) (11)//scaffold_18:428673-429201(+) (11)	POPTR_0018s00460 (7)//POPTR_0018s00450 (7)//POPTR_0018s00480 (7)	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr2g122680.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.222409.1.S1_s_at	A	A1TS	POPTR_0004s19600	POPTR_0004s19600 (11)	scaffold_4:19392085-19392926(+) (11)	NA	Q93ZB9	Fatty acyl-CoA reductase 3	AT4G33790.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222412.1.S1_at	A	A1TS	POPTR_0004s19640	POPTR_0004s19640 (11)	scaffold_4:19427041-19427440(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G36430.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222413.1.S1_at	A	A1MA	POPTR_0004s19650	POPTR_0004s19650 (11)	scaffold_4:19431787-19432030(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222414.1.S1_at	A	A1TS	POPTR_0004s19700	POPTR_0004s19700 (10)	scaffold_4:19475486-19476832(-) (10)	NA	Q96BP3	Peptidylprolyl isomerase domain and WD repeat-containing protein 1	AT3G44600.1	cyclophilin71 	LOC_Os08g44330.1	"peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed"	AC233070_2.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type AC233070.4 3910-1563 F EGN_Mt090430 200"	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.222415.1.S1_at	A	A1TS	POPTR_0004s19710	POPTR_0004s19710 (9)	scaffold_4:19480254-19480821(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222416.1.S1_at	A	A1TS	POPTR_0004s19740	POPTR_0004s19740 (11)	scaffold_4:19514639-19515189(+) (11)	NA	Q0DCT8	Protein kinase G11A	AT3G52890.2	KCBP-interacting protein kinase 	LOC_Os12g29580.1	"AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g016740.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222417.1.S1_at	A	A1TS	POPTR_0004s19760	POPTR_0004s19760 (11)	scaffold_4:19518689-19520372(-) (11)	NA	NA	NA	AT5G22510.1	alkaline/neutral invertase 	LOC_Os02g32730.1	"neutral/alkaline invertase, putative, expressed"	Medtr4g141220.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222418.1.S1_at	A	A1MS	POPTR_0004s19820	POPTR_0004s19820 (10)	scaffold_4:19539180-19539763(+) (10)	NA	Q8S9Z5	Dehydration-responsive element-binding protein 1F	AT4G25470.1	C-repeat/DRE binding factor 2 	LOC_Os01g73770.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr1g129500.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.222419.1.S1_at	A	A1TS	POPTR_0004s19850	POPTR_0004s19850 (11)	scaffold_4:19551207-19552080(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222421.1.S1_at	A	A1TS	POPTR_0004s19980	POPTR_0004s19980 (11)	scaffold_4:19643662-19644198(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g073390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222422.1.S1_at	A	A1TS	POPTR_0004s19990	POPTR_0004s19990 (11)	scaffold_4:19655051-19656288(+) (11)	NA	NA	NA	AT5G22640.1	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222424.1.S1_at	A	A1TS	POPTR_0004s20060	POPTR_0004s20060 (11)	scaffold_4:19707698-19708512(-) (11)	NA	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr5g010440.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
PtpAffx.222425.1.S1_at	A	A1TS	POPTR_0004s20080	POPTR_0004s20080 (11)	scaffold_4:19714407-19716401(-) (11)	NA	Q9FNI6	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2	AT5G22750.1	DNA/RNA helicase protein 	LOC_Os02g32570.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0008270|zinc ion binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.222427.1.S1_at	A	A1TS	POPTR_0004s20100	POPTR_0004s20100 (9)	scaffold_4:19745750-19745786(-) (9)	NA	Q8LPK4	AP-2 complex subunit alpha-2	AT5G22780.1	"Adaptor protein complex AP-2, alpha subunit "	LOC_Os03g02150.1	"adapitin protein, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.222427.1.S1_x_at	A	A1TS	POPTR_0004s20100	POPTR_0004s20100 (9)	scaffold_4:19745731-19745984(-) (9)	NA	Q8LPK4	AP-2 complex subunit alpha-2	AT5G22780.1	"Adaptor protein complex AP-2, alpha subunit "	LOC_Os03g02150.1	"adapitin protein, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.222428.1.S1_at	A	A1TS	POPTR_0004s20110	POPTR_0004s20110 (11)	scaffold_4:19761921-19762578(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT3G44820.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	AC157372_1.1	BTB/POZ; NPH3 AC157372.2 9592-12375 E EGN_Mt090430 200	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.222429.1.S1_at	A	A1TS	POPTR_0004s20130	POPTR_0004s20130 (10)	scaffold_4:19788716-19789369(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22243.1.S1_s_at	A	A1TS	POPTR_0006s14140	POPTR_0006s14140 (11)	scaffold_6:11449565-11450073(+) (11)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222430.1.S1_at	A	A1TS	POPTR_0004s20140	POPTR_0004s20140 (11)	scaffold_4:19793096-19793984(+) (11)	NA	Q9FYC7	Putative phospholipid:diacylglycerol acyltransferase 2	AT3G44830.1	Lecithin:cholesterol acyltransferase family protein 	LOC_Os09g27210.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr6g044030.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
PtpAffx.222431.1.S1_at	A	A1TS	POPTR_0004s20160	POPTR_0004s20160 (11)	scaffold_4:19798364-19798882(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222432.1.S1_at	A	A1TS	POPTR_0004s20170	POPTR_0004s20170 (11)	scaffold_4:19799944-19801264(-) (11)	NA	Q9UPE1	Serine/threonine-protein kinase SRPK3	AT3G44850.1	Protein kinase superfamily protein 	LOC_Os03g53720.1	"SRPK4, putative, expressed"	Medtr1g073750.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222433.1.S1_at	A	A1TS	POPTR_0004s20180	POPTR_0004s20180 (11)	scaffold_4:19808866-19808986(-) (11)	NA	NA	NA	AT2G27180.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g104580.1	"pollen preferential protein^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222433.1.S1_x_at	A	A1TS	POPTR_0004s20180	POPTR_0004s20180 (11)	scaffold_4:19808787-19809100(-) (11)	NA	NA	NA	AT2G27180.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g104580.1	"pollen preferential protein^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222434.1.S1_at	A	A1TS	POPTR_0004s20190	POPTR_0004s20190 (11)	scaffold_4:19814556-19815851(-) (11)	NA	Q43207	70 kDa peptidyl-prolyl isomerase	AT5G21990.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g06710.1	"tetratricopeptide repeat, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222435.1.S1_at	A	A1TS	POPTR_0004s20200	POPTR_0004s20200 (9)	scaffold_4:19826255-19826755(-) (11)	NA	O49675	"Probable carotenoid cleavage dioxygenase 4, chloroplastic"	AT4G19170.1	nine-cis-epoxycarotenoid dioxygenase 4 	LOC_Os02g47510.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222436.1.S1_at	A	A1TS	POPTR_0004s20230	POPTR_0004s20230 (11)	scaffold_4:19846114-19846553(-) (11)	NA	NA	NA	AT2G27140.1	HSP20-like chaperones superfamily protein 	LOC_Os03g45340.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr5g094550.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222437.1.S1_s_at	A	A2TS	POPTR_0004s20240	POPTR_0004s20240 (11)//POPTR_0004s20260 (11)	scaffold_4:19847290-19847759(-) (11)//scaffold_4:19857141-19857610(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222439.1.S1_at	A	A1TS	POPTR_0004s20280	POPTR_0004s20280 (11)	scaffold_4:19871522-19872747(+) (11)	NA	Q7G192	Aldehyde oxidase 2	AT3G43600.1	aldehyde oxidase 2 	LOC_Os07g18120.1	"aldehyde oxidase, putative, expressed"	Medtr5g094490.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0051536|iron-sulfur cluster binding||GO:0046872|metal ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.222441.1.S1_x_at	A	A1TS	POPTR_0004s20370	POPTR_0004s20370 (11)	scaffold_4:19951979-19952381(-) (11)	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT1G16130.1	wall associated kinase-like 2 	LOC_Os02g42160.1	OsWAK15 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222443.1.S1_at	A	A1TS	POPTR_0004s20440	POPTR_0004s20440 (11)	scaffold_4:20013258-20013841(+) (11)	NA	Q9XGI7	Nicotianamine synthase	AT5G04950.1	nicotianamine synthase 1 	LOC_Os03g19420.2	"nicotianamine synthase, putative, expressed"	Medtr1g100600.1	Nicotianamine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0030418|nicotianamine biosynthetic process||GO:0044106|cellular amine metabolic process	GO:0030410|nicotianamine synthase activity	NA
PtpAffx.222444.1.S1_at	A	A1TS	POPTR_0004s20460	POPTR_0004s20460 (11)	scaffold_4:20022524-20023439(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222445.1.S1_at	A	A1TS	POPTR_0004s20470	POPTR_0004s20470 (11)	scaffold_4:20034983-20035520(+) (11)	NA	Q9GYZ0	Kinesin-like protein KIF15	AT3G44050.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g53920.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g104560.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.222446.1.S1_at	A	A1TS	POPTR_0004s20480	POPTR_0004s20480 (11)	scaffold_4:20037373-20038373(-) (11)	NA	NA	NA	AT5G12230.1	MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g44010.2	"nucleolar protein NOP5, putative, expressed"	AC233651_17.1	"TRAF3-interacting protein 1, related AC233651.1 53447-51580 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222448.1.S1_at	A	A1TS	POPTR_0004s20510	POPTR_0004s20510 (11)	scaffold_4:20043999-20044865(-) (11)	NA	Q39054	Molybdopterin biosynthesis protein CNX1	AT5G20990.1	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) 	LOC_Os04g56620.2	"molybdopterin biosynthesis protein CNX1, putative, expressed"	Medtr5g094600.1	"Bifunctional molybdenum cofactor molybdenum incorporation/glycine receptor, gephyrin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22245.1.S1_s_at	A	A1TS	POPTR_0004s11200	POPTR_0004s11200 (11)	scaffold_4:9798943-9799235(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G30300.1	O-fucosyltransferase family protein 	LOC_Os05g04190.2	"growth regulator related protein, putative, expressed"	Medtr7g015370.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222450.1.S1_at	A	A1TS	POPTR_0004s20570	POPTR_0004s20570 (11)	scaffold_4:20062616-20063195(+) (11)	NA	Q652P9	Germin-like protein 9-3	AT3G62020.1	germin-like protein 10 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107660.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.222451.1.S1_at	A	A1TS	POPTR_0004s20580	POPTR_0004s20580 (11)	scaffold_4:20064608-20065147(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT4G14480.1	Protein kinase superfamily protein 	LOC_Os03g47470.1	"STE_PAK_Ste20_STLK.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr2g121220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222452.1.S1_at	A	A1MS	POPTR_0004s20610	POPTR_0004s20610 (10)	scaffold_4:20079267-20079825(-) (10)	POPTR_0004s20590 (7)	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222453.1.S1_at	A	A1TS	POPTR_0004s20630	POPTR_0004s20630 (11)	scaffold_4:20093794-20094681(-) (11)	NA	Q18411	Nucleoside-triphosphatase ntp-1	AT2G02970.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os08g33850.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g044090.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.222454.1.S1_at	A	A1TS	POPTR_0004s20650	POPTR_0004s20650 (11)	scaffold_4:20109674-20110064(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222456.1.S1_at	A	A1TS	POPTR_0004s20670	POPTR_0004s20670 (9)	scaffold_4:20117939-20118492(+) (11)	NA	NA	NA	AT5G21050.1	LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64090.1); Has 206 Blast hits to 206 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g51210.1	expressed protein	Medtr5g094760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222457.1.S1_at	A	A1TS	POPTR_0004s20690	POPTR_0004s20690 (11)	scaffold_4:20128399-20128967(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222458.1.S1_at	A	A1TS	POPTR_0004s20690	POPTR_0004s20690 (11)	scaffold_4:20130180-20130742(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222459.1.S1_s_at	A	A1TS	POPTR_0004s20770	POPTR_0004s20770 (11)	scaffold_4:20183919-20184454(-) (11)	NA	Q08BW0	OTU domain-containing protein 5-A	AT2G27350.6	OTU-like cysteine protease family protein 	LOC_Os04g33780.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr2g107500.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222460.1.S1_at	A	A1MS	POPTR_0004s20780	POPTR_0004s20780 (11)	scaffold_4:20190185-20190365(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222461.1.S1_at	A	A1TS	POPTR_0004s20820	POPTR_0004s20820 (10)	scaffold_4:20205965-20206660(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222462.1.S1_at	A	A1TS	POPTR_0004s20840	POPTR_0004s20840 (11)	scaffold_4:20223358-20223852(+) (11)	NA	Q0WR59	Probable inactive receptor kinase At5g10020	AT2G27060.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g20450.1	expressed protein	Medtr5g094860.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.222464.1.S1_at	A	A1TS	POPTR_0004s20880	POPTR_0004s20880 (11)	scaffold_4:20260487-20261079(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.222464.1.S1_x_at	A	A1TS	POPTR_0004s20880	POPTR_0004s20880 (11)	scaffold_4:20260487-20261079(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.222465.1.S1_at	A	A1TS	POPTR_0004s20890	POPTR_0004s20890 (11)	scaffold_4:20267002-20267551(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039490.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222468.1.S1_at	A	A1TS	POPTR_0004s20950	POPTR_0004s20950 (11)	scaffold_4:20301759-20302272(+) (11)	NA	Q9XIN8	F-box protein At2g27310	AT2G27310.1	F-box family protein 	LOC_Os02g33240.1	"OsFBX51 - F-box domain containing protein, expressed"	Medtr2g107460.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222469.1.S1_at	A	A1TS	POPTR_0004s20990	POPTR_0004s20990 (11)	scaffold_4:20323392-20323813(-) (11)	NA	NA	NA	AT4G16295.1	S-protein homologue 1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222470.1.S1_at	A	A1TS	POPTR_0004s21040	POPTR_0004s21040 (11)	scaffold_4:20340831-20341378(+) (11)	NA	Q7FAE1	Momilactone A synthase	AT3G26770.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.222472.1.S1_at	A	A1TS	POPTR_0004s21100	POPTR_0004s21100 (11)	scaffold_4:20376527-20377542(-) (11)	NA	O35261	Transcription factor E2F3	AT5G22220.2	E2F transcription factor 1 	LOC_Os12g06200.1	"E2F family transcription factor protein, putative, expressed"	AC146557_13.1	Winged helix repressor DNA-binding AC146557.33 75654-81329 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
PtpAffx.222473.1.S1_at	A	A1TS	POPTR_0004s21110	POPTR_0004s21110 (10)	scaffold_4:20387535-20388077(-) (11)	NA	Q9LVA2	Pentatricopeptide repeat-containing protein At5g62370	AT5G62370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g02650.1	PPR repeat containing protein	AC233659_7.1	Pentatricopeptide repeat AC233659.1 31198-26001 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222474.1.S1_at	A	A1MS	POPTR_0004s21140	POPTR_0004s21140 (10)	scaffold_4:20395888-20396041(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222474.1.S1_x_at	A	A1MS	POPTR_0004s21140	POPTR_0004s21140 (11)	scaffold_4:20395888-20396553(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222475.1.S1_at	A	A1TS	POPTR_0004s21220	POPTR_0004s21220 (10)	scaffold_4:20444559-20445079(-) (11)	NA	NA	NA	AT2G27470.1	"nuclear factor Y, subunit B11 "	LOC_Os09g39490.1	"histone-like transcription factor and archaeal histone, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222476.1.S1_at	A	A1MS	POPTR_0004s21280	POPTR_0004s21280 (9)	scaffold_4:20473604-20474662(-) (9)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039420.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222478.1.S1_at	A	A1TS	POPTR_0004s21350	POPTR_0004s21350 (11)	scaffold_4:20510039-20510445(+) (11)	NA	Q9ZW88	F-box/LRR-repeat protein At1g67190	AT1G67190.2	F-box/RNI-like superfamily protein 	LOC_Os01g64030.4	"OsFBL5 - F-box domain and LRR containing protein, expressed"	Medtr4g070040.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.222479.1.S1_at	A	A1TS	POPTR_0004s21360	POPTR_0004s21360 (11)	scaffold_4:20517675-20518346(+) (11)	NA	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT1G08320.3	bZIP transcription factor family protein 	LOC_Os01g64020.1	"transcription factor, putative, expressed"	Medtr4g070060.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.222479.1.S1_x_at	A	A1TS	POPTR_0004s21360	POPTR_0004s21360 (11)	scaffold_4:20517675-20518346(+) (11)	NA	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT1G08320.3	bZIP transcription factor family protein 	LOC_Os01g64020.1	"transcription factor, putative, expressed"	Medtr4g070060.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.222480.1.S1_at	A	A1TS	POPTR_0004s21430	POPTR_0004s21430 (11)	scaffold_4:20564463-20565534(-) (11)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.222481.1.S1_at	A	A1TS	POPTR_0004s21435	POPTR_0004s21435 (11)	scaffold_4:20567522-20567759(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222482.1.S1_at	A	A1TS	POPTR_0004s21440	POPTR_0004s21440 (11)	scaffold_4:20570209-20570510(-) (11)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.222483.1.S1_at	A	A1TS	POPTR_0004s21450	POPTR_0004s21450 (11)	scaffold_4:20574482-20575011(-) (11)	NA	Q9SL48	SEC1 family transport protein SLY1	AT2G17980.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os03g42320.1	"Sec1 family transport protein, putative, expressed"	AC233560_16.1	Sec1-like protein AC233560.2 38842-41210 E EGN_Mt090430 200	GO:0006904|vesicle docking during exocytosis	NA	NA
PtpAffx.222484.1.S1_at	A	A1TS	POPTR_0004s21460	POPTR_0004s21460 (11)	scaffold_4:20582996-20583911(-) (11)	NA	Q3TPR7	Transmembrane protein 184C	AT4G38360.2	Protein of unknown function (DUF300) 	LOC_Os06g51100.2	"transmembrane protein, putative, expressed"	Medtr3g164030.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222485.1.S1_at	A	A1TS	POPTR_0004s21490	POPTR_0004s21490 (11)	scaffold_4:20599614-20599915(+) (11)	NA	Q681N2	U-box domain-containing protein 15	AT5G42340.1	Plant U-Box 15 	LOC_Os08g37570.1	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.222486.1.S1_s_at	A	A1TS	POPTR_0004s21500	POPTR_0004s21500 (11)	scaffold_4:20606968-20607935(+) (11)	NA	Q9UMX0	Ubiquilin-1	AT2G17200.1	ubiquitin family protein 	LOC_Os10g39620.2	"ubiquitin family protein, putative, expressed"	Medtr5g023730.1	UV excision repair protein Rad23; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222487.1.S1_at	A	A1TS	POPTR_0004s21520	POPTR_0004s21520 (11)	scaffold_4:20612913-20613457(+) (11)	NA	NA	NA	AT4G35280.1	C2H2-like zinc finger protein 	LOC_Os02g19180.1	ZOS2-06 - C2H2 zinc finger protein	Medtr5g106680.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.222488.1.S1_at	A	A1TS	POPTR_0004s21530	POPTR_0004s21530 (11)	scaffold_4:20616688-20617077(+) (11)	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222489.1.S1_at	A	A1TS	POPTR_0004s21560	POPTR_0004s21560 (11)	scaffold_4:20635091-20635642(-) (11)	NA	Q0WPZ6	Pentatricopeptide repeat-containing protein At2g17140	AT2G17140.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g03930.1	expressed protein	Medtr4g124590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222490.1.S1_at	A	A1TS	POPTR_0004s21570	POPTR_0004s21570 (11)	scaffold_4:20637768-20638114(-) (11)	NA	NA	NA	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.2	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.2	Inorganic H+ pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222491.1.S1_at	A	A1TS	POPTR_0004s21580	POPTR_0004s21580 (11)	scaffold_4:20638161-20638747(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222492.1.S1_s_at	A	A1TS	POPTR_0004s21600	POPTR_0004s21600 (11)	scaffold_4:20642329-20643248(-) (11)	NA	Q0WQD2	Probable galacturonosyltransferase 3	AT4G38270.1	galacturonosyltransferase 3 	LOC_Os10g21890.2	"glycosyl transferase family 8, putative, expressed"	Medtr3g136240.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.222493.1.S1_at	A	A1TS	POPTR_0004s21610	POPTR_0004s21610 (11)	scaffold_4:20648724-20649467(-) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222494.1.S1_at	A	A1TS	POPTR_0004s21640	POPTR_0004s21640 (11)	scaffold_4:20668349-20668598(-) (11)	NA	NA	NA	AT2G23240.2	"Plant EC metallothionein-like protein, family 15 "	NA	NA	Medtr8g012690.1	"Plant EC metallothionein-like protein, family 15; Ribosomal protein S8E "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.222494.1.S1_x_at	A	A1TS	POPTR_0004s21640	POPTR_0004s21640 (11)	scaffold_4:20668303-20668598(-) (11)	NA	NA	NA	AT2G23240.2	"Plant EC metallothionein-like protein, family 15 "	NA	NA	Medtr8g012690.1	"Plant EC metallothionein-like protein, family 15; Ribosomal protein S8E "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.222496.1.S1_at	A	A1TS	POPTR_0004s21660	POPTR_0004s21660 (11)	scaffold_4:20722108-20722520(-) (11)	NA	Q4V8B1	Proton-coupled amino acid transporter 3	AT2G42005.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47780.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g024300.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222497.1.S1_s_at	A	A1TS	POPTR_0004s21700	POPTR_0004s21700 (11)	scaffold_4:20751429-20751807(+) (11)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT2G17270.1	phosphate transporter 3;3 	LOC_Os09g38100.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr5g024710.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222498.1.S1_at	A	A1TS	POPTR_0004s21720	POPTR_0004s21720 (11)	scaffold_4:20760396-20761391(-) (11)	NA	NA	NA	AT4G38225.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g03670.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222499.1.S1_s_at	A	A1TS	POPTR_0004s21730	POPTR_0004s21730 (11)	scaffold_4:20767212-20767745(-) (11)	NA	NA	NA	AT4G35320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g40060.1	expressed protein	Medtr5g106850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2225.1.S1_at	A	A1TS	POPTR_0005s03900	POPTR_0005s03900 (10)	scaffold_5:2583841-2584161(-) (10)	NA	Q8RXX9	E3 ubiquitin-protein ligase ATL6	AT3G05200.1	RING/U-box superfamily protein 	LOC_Os09g29310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222500.1.S1_at	A	A1TS	POPTR_0004s21760	POPTR_0004s21760 (11)	scaffold_4:20782983-20783751(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222501.1.S1_at	A	A1TS	POPTR_0004s21770	POPTR_0004s21770 (11)	scaffold_4:20786897-20787460(+) (11)	NA	Q9FND9	Probable galactinol--sucrose galactosyltransferase 5	AT5G40390.1	Raffinose synthase family protein 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr3g114540.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222502.1.S1_at	A	A1TS	POPTR_0004s21800	POPTR_0004s21800 (11)	scaffold_4:20799273-20800015(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g40120.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222503.1.S1_at	A	A1TS	POPTR_0004s21820	POPTR_0004s21820 (11)	scaffold_4:20818698-20819260(+) (11)	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g106900.1	"Protein of unknown function DUF1981, SEC7 associated "	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.222504.1.S1_s_at	A	A2TS	POPTR_0004s21840	POPTR_0004s21840 (11)//POPTR_1986s00200 (11)	scaffold_1986:316-769(+) (11)//scaffold_4:20838988-20839441(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT4G35390.1	AT-hook protein of GA feedback 1 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	CU179634_7.1	"AGF1 ; transcription facto, putative CU179634.6 27665-28510 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222505.1.S1_at	A	A1MS	POPTR_0004s21850	POPTR_0004s21850 (10)	scaffold_4:20839634-20845207(+) (10)	NA	Q9LPR8	Scarecrow-like protein 3	AT1G50420.1	scarecrow-like 3 	LOC_Os12g04370.1	"GRAS family transcription factor containing protein, expressed"	Medtr5g009100.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222506.1.S1_at	A	A1TS	POPTR_0004s21860	POPTR_0004s21860 (11)	scaffold_4:20850706-20851259(+) (11)	NA	Q9SZL9	Cellulose synthase-like protein D4	AT4G38190.1	cellulose synthase like D4 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr1g047100.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.222507.1.S1_at	A	A1TS	POPTR_0004s21910	POPTR_0004s21910 (11)	scaffold_4:20873845-20874300(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os02g48210.1	"lectin-like protein kinase, putative, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222508.1.S1_at	A	A1TS	POPTR_0004s21940	POPTR_0004s21940 (11)	scaffold_4:20882773-20883712(-) (11)	NA	P93025	Phototropin-2	AT5G58140.1	phototropin 2 	LOC_Os04g23890.3	"AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222508.1.S1_x_at	A	A1TS	POPTR_0004s21940	POPTR_0004s21940 (11)	scaffold_4:20882678-20885269(-) (11)	NA	P93025	Phototropin-2	AT5G58140.1	phototropin 2 	LOC_Os04g23890.3	"AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222509.1.S1_at	A	A1TS	POPTR_0004s21940	POPTR_0004s21940 (11)	scaffold_4:20892464-20895583(-) (11)	NA	P93025	Phototropin-2	AT5G58140.1	phototropin 2 	LOC_Os04g23890.3	"AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222509.1.S1_s_at	A	A2TS	POPTR_0004s21940	POPTR_0004s21940 (11)//POPTR_0009s17180 (11)	scaffold_4:20891800-20894413(-) (11)//scaffold_9:12920418-12923078(-) (11)	NA	P93025	Phototropin-2	AT5G58140.1	phototropin 2 	LOC_Os04g23890.3	"AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222510.1.S1_at	A	A1TS	POPTR_0004s21960	POPTR_0004s21960 (10)	scaffold_4:20905972-20907017(-) (11)	NA	Q8GX93	Chloride channel protein CLC-e	AT4G35440.1	chloride channel E 	LOC_Os01g50860.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr5g106870.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.222512.1.S1_at	A	A1TS	POPTR_0004s21990	POPTR_0004s21990 (11)	scaffold_4:20933176-20933673(-) (11)	NA	Q680Q4	E3 SUMO-protein ligase SIZ1	AT5G60410.5	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr4g080810.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.222513.1.S1_s_at	A	A1TS	POPTR_0004s21990	POPTR_0004s21990 (11)	scaffold_4:20936718-20939178(-) (11)	NA	Q680Q4	E3 SUMO-protein ligase SIZ1	AT5G60410.5	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr4g080810.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.222514.1.S1_at	A	A1TS	POPTR_0004s22080	POPTR_0004s22080 (11)	scaffold_4:21004129-21004543(+) (11)	NA	Q86VX9	Vacuolar fusion protein MON1 homolog A	AT2G28390.1	SAND family protein 	LOC_Os01g74460.2	"vacuolar fusion protein MON1 homolog A, putative, expressed"	Medtr2g110240.1	Yeast 73.5kDa hypothetical-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222515.1.S1_at	A	A1TS	POPTR_0004s22080	POPTR_0004s22080 (11)	scaffold_4:21015363-21015493(+) (11)	NA	Q86VX9	Vacuolar fusion protein MON1 homolog A	AT2G28390.1	SAND family protein 	LOC_Os01g74460.2	"vacuolar fusion protein MON1 homolog A, putative, expressed"	Medtr2g110240.1	Yeast 73.5kDa hypothetical-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222516.1.S1_at	A	A1TS	POPTR_0004s22130	POPTR_0004s22130 (11)	scaffold_4:21072549-21073468(-) (11)	NA	Q653H7	Auxin response factor 18	AT2G28350.1	auxin response factor 10 	LOC_Os06g47150.3	"auxin response factor 18, putative, expressed"	Medtr2g110140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.222517.1.S1_at	A	A1TS	POPTR_0004s22170	POPTR_0004s22170 (11)	scaffold_4:21107498-21108050(-) (11)	NA	NA	NA	AT5G60700.1	glycosyltransferase family protein 2 	LOC_Os02g56260.1	expressed protein	AC233683_2.1	hypothetical protein AC233683.2 9162-5330 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222518.1.S1_at	A	A1TS	POPTR_0004s22220	POPTR_0004s22220 (9)	scaffold_4:21152448-21153607(-) (9)	NA	Q9SL29	Putative cyclic nucleotide-gated ion channel 15	AT2G28260.1	cyclic nucleotide-gated channel 15 	LOC_Os02g41710.1	"cyclic nucleotide-gated ion channel, putative, expressed"	AC233683_6.1	Cyclic nucleotide-binding; Ion transport protein AC233683.2 39853-37118 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222519.1.S1_at	A	A1TS	POPTR_0004s22230	POPTR_0004s22230 (11)	scaffold_4:21157302-21157736(-) (11)	NA	Q9SL29	Putative cyclic nucleotide-gated ion channel 15	AT2G28260.1	cyclic nucleotide-gated channel 15 	NA	NA	Medtr1g076850.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222519.1.S1_x_at	A	A1TS	POPTR_0004s22230	POPTR_0004s22230 (11)	scaffold_4:21157302-21157740(-) (11)	NA	Q9SL29	Putative cyclic nucleotide-gated ion channel 15	AT2G28260.1	cyclic nucleotide-gated channel 15 	NA	NA	Medtr1g076850.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222520.1.S1_s_at	A	A1TS	POPTR_0004s22260	POPTR_0004s22260 (11)	scaffold_4:21169576-21169670(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT2G28250.2	Protein kinase superfamily protein 	LOC_Os02g02040.5	"protein kinase, putative, expressed"	AC233683_8.1	"Serine/threonine protein kinase, active site AC233683.2 51421-47673 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222520.1.S1_x_at	A	A1TS	POPTR_0004s22260	POPTR_0004s22260 (11)	scaffold_4:21169570-21170985(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT2G28250.2	Protein kinase superfamily protein 	LOC_Os02g02040.5	"protein kinase, putative, expressed"	AC233683_8.1	"Serine/threonine protein kinase, active site AC233683.2 51421-47673 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222521.1.S1_at	A	A1MS	POPTR_0004s22270	POPTR_0004s22270 (10)	scaffold_4:21182794-21183036(-) (10)	NA	Q12873	Chromodomain-helicase-DNA-binding protein 3	AT1G08060.2	ATP-dependent helicase family protein 	LOC_Os06g01320.1	"chromo domain containing protein, expressed"	fpc265_22.1	"Helicase, C-terminal fpc265 101840-115910 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222521.1.S1_s_at	A	A1TS	POPTR_0004s22270	POPTR_0004s22270 (11)	scaffold_4:21182898-21183378(-) (11)	NA	Q12873	Chromodomain-helicase-DNA-binding protein 3	AT1G08060.2	ATP-dependent helicase family protein 	LOC_Os06g01320.1	"chromo domain containing protein, expressed"	fpc265_22.1	"Helicase, C-terminal fpc265 101840-115910 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222524.1.S1_at	A	A1TS	POPTR_0004s22300	POPTR_0004s22300 (11)	scaffold_4:21218800-21219505(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222525.1.S1_at	A	A1MS	POPTR_0004s22310	POPTR_0004s22310 (10)	scaffold_4:21228169-21228407(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222526.1.S1_at	A	A1TS	POPTR_0004s22320	POPTR_0004s22320 (11)	scaffold_4:21234203-21234983(-) (11)	NA	Q9SJJ3	BEL1-like homeodomain protein 8	AT2G27990.1	BEL1-like homeodomain 8 	LOC_Os03g52239.1	"homeobox domain containing protein, expressed"	fpc265_20.1	POX; Homeodomain-related fpc265 87448-90403 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.222527.1.S1_at	A	A1TS	POPTR_0004s22330	POPTR_0004s22330 (11)	scaffold_4:21240395-21240789(-) (11)	NA	NA	NA	NA	NA	NA	NA	fpc265_20.1	POX; Homeodomain-related fpc265 87448-90403 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222531.1.S1_at	A	A1TS	POPTR_0014s19770	POPTR_0014s19770 (11)	scaffold_14:17648222-17649488(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g005880.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222532.1.S1_at	A	A1TS	POPTR_0002s00300	POPTR_0002s00300 (11)	scaffold_2:55080-55735(-) (11)	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT2G19440.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os06g39060.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g100300.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222535.1.S1_s_at	A	A1TS	POPTR_0004s01720	POPTR_0004s01720 (11)	scaffold_4:1042386-1042530(-) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.222536.1.S1_at	A	A1TS	POPTR_2497s00220	POPTR_2497s00220 (11)	scaffold_2497:986-1615(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222537.1.S1_at	A	A1TS	POPTR_2497s00210	POPTR_2497s00210 (11)	scaffold_2497:537-722(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222538.1.S1_at	A	A1TS	POPTR_2497s00200	POPTR_2497s00200 (9)	scaffold_2497:92-483(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222540.1.S1_at	A	A1TS	POPTR_0012s10890	POPTR_0012s10890 (11)	scaffold_12:11557952-11559010(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222542.1.S1_at	A	A1MA	POPTR_0002s08050	POPTR_0002s08050 (10)	scaffold_2:5568468-5568779(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222543.1.S1_at	A	A1TS	POPTR_0002s08050	POPTR_0002s08050 (11)	scaffold_2:5568068-5568834(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222544.1.S1_at	A	A1TS	POPTR_0005s03740	POPTR_0005s03740 (11)	scaffold_5:2495059-2495271(-) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.222545.1.S1_s_at	A	A2TS	POPTR_0005s03760	POPTR_0005s03760 (11)//POPTR_0258s00220 (11)	scaffold_258:18904-19381(-) (11)//scaffold_5:2504100-2504577(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr3g015730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222546.1.S1_s_at	A	A3TS	POPTR_0005s03760	POPTR_0005s03760 (11)//POPTR_0258s00200 (11)//POPTR_0258s00220 (10)	scaffold_258:1665-1714(-) (11)//scaffold_258:19827-19876(-) (10)//scaffold_5:2503568-2503617(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr3g015730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222548.1.S1_at	A	A2TS	POPTR_0014s01225	POPTR_0014s01225 (11)//POPTR_0014s00770 (9)	scaffold_14:736014-736062(+) (9)//scaffold_14:1198904-1199081(-) (11)	NA	NA	NA	AT5G23400.1	Leucine-rich repeat (LRR) family protein 	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.222548.1.S1_s_at	A	A2TS	POPTR_0014s00770	POPTR_0014s00955 (11)//POPTR_0014s00770 (11)	scaffold_14:704350-704685(+) (9)//scaffold_14:735859-736194(+) (11)//scaffold_14:897403-897738(-) (11)//scaffold_14:1198772-1199107(-) (11)	POPTR_0014s01225 (8)	NA	NA	AT5G23400.1	Leucine-rich repeat (LRR) family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222550.1.S1_x_at	A	A1MS	POPTR_0001s43740	POPTR_0001s43740 (11)	scaffold_1:44064545-44064931(-) (11)	POPTR_0049s00220 (8)	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_3.1	NB-ARC; AAA ATPase AC225526.7 19758-13755 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222552.1.S1_at	A	A1TS	POPTR_0001s43735	POPTR_0001s43735 (11)	scaffold_1:44063142-44063597(-) (11)	NA	NA	NA	NA	NA	NA	NA	AC202596_16.1	Leucine-rich repeat AC202596.21 101758-89332 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222570.1.S1_at	A	A1TS	POPTR_0019s00370	POPTR_0019s00370 (11)	scaffold_19:143930-144034(-) (11)	NA	Q949R4	"4,5-DOPA dioxygenase extradiol-like protein"	AT4G15093.1	catalytic LigB subunit of aromatic ring-opening dioxygenase family 	LOC_Os01g65680.1	"4,5-DOPA dioxygenase extradiol, putative, expressed"	Medtr7g035130.1	"Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222570.1.S1_x_at	A	A1TS	POPTR_0019s00370	POPTR_0019s00370 (11)	scaffold_19:143804-144034(-) (11)	NA	Q949R4	"4,5-DOPA dioxygenase extradiol-like protein"	AT4G15093.1	catalytic LigB subunit of aromatic ring-opening dioxygenase family 	LOC_Os01g65680.1	"4,5-DOPA dioxygenase extradiol, putative, expressed"	Medtr7g035130.1	"Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222571.1.S1_at	A	A1MS	POPTR_0006s22480	POPTR_0006s22480 (11)	scaffold_6:21489965-21490001(-) (11)	NA	NA	NA	AT3G11560.4	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222571.1.S1_s_at	A	A2TS	POPTR_0006s22480	POPTR_0006s22480 (11)//POPTR_0016s07580 (11)	scaffold_16:5453668-5453857(-) (11)//scaffold_6:21490627-21490816(-) (11)	NA	NA	NA	AT3G11560.4	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222574.1.S1_at	A	A1TS	POPTR_0001s31110	POPTR_0001s31110 (11)	scaffold_1:29466086-29466256(-) (11)	POPTR_0001s31140 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222575.1.S1_at	A	A1TS	POPTR_0001s31100	POPTR_0001s31100 (11)	scaffold_1:29460317-29461132(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g08110.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr4g130280.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222577.1.S1_s_at	A	A1TS	POPTR_0013s06110	POPTR_0013s06110 (11)	scaffold_13:4531156-4532157(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT1G58030.1	cationic amino acid transporter 2 	LOC_Os12g42850.1	"amino acid permease, putative, expressed"	Medtr7g103380.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.222578.1.S1_s_at	A	A1TS	POPTR_0019s09290	POPTR_0019s09290 (11)	scaffold_19:10865217-10865267(-) (11)//scaffold_19:10912801-10912851(-) (11)	NA	Q84TG1	DEAD-box ATP-dependent RNA helicase 57	AT3G09720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g45360.1	"DEAD/DEAH box helicase domain containing protein, expressed"	Medtr7g121020.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.222579.1.S1_at	A	A1TS	POPTR_0010s07810	POPTR_0010s07810 (11)	scaffold_10:8773966-8774088(-) (11)	NA	Q0WR59	Probable inactive receptor kinase At5g10020	AT5G10020.2	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g43350.1	expressed protein	Medtr3g145010.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222580.1.S1_s_at	A	A1TS	POPTR_0010s01490	POPTR_0010s01490 (11)	scaffold_10:1613494-1613725(-) (11)	NA	P11182	"Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial"	AT3G06850.2	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os01g21160.2	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.222583.1.S1_x_at	A	A1TS	POPTR_0011s01400	POPTR_0011s01400 (11)	scaffold_11:978683-988437(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr7g105900.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.222585.1.S1_at	A	A2TS	POPTR_0053s00280	POPTR_0053s00280 (11)//POPTR_0019s02770 (9)	scaffold_19:2585765-2586119(+) (9)//scaffold_53:168542-168907(-) (11)	POPTR_0073s00250 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222592.1.S1_s_at	A	A3TS	POPTR_0019s13260	POPTR_0163s00240 (11)//POPTR_0019s13260 (11)//POPTR_0163s00250 (11)	scaffold_163:32205-32663(+) (11)//scaffold_163:44670-45128(+) (11)//scaffold_19:14206984-14207442(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G03670.1	ankyrin repeat family protein 	LOC_Os05g35310.1	"ankyrin repeat family protein, putative"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222593.1.S1_at	A	A1TS	POPTR_0018s04260	POPTR_0018s04260 (11)	scaffold_18:3601468-3602794(+) (11)	NA	Q9S9M2	Wall-associated receptor kinase-like 4	AT1G16150.1	wall associated kinase-like 4 	LOC_Os10g10130.3	"OsWAK112d - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222596.1.S1_at	A	A2TS	POPTR_0056s00230	POPTR_0056s00230 (11)//POPTR_0005s01640 (10)	scaffold_5:1094113-1094635(+) (10)//scaffold_56:14956-25218(+) (11)	NA	Q6XAT2	LRR receptor-like serine/threonine-protein kinase ERL2	AT3G11080.1	receptor like protein 35 	LOC_Os01g72700.1	expressed protein	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.222596.1.S1_s_at	A	A7TS	POPTR_0005s00950	POPTR_0005s01640 (11)//POPTR_0005s01310 (11)//POPTR_0047s00250 (11)//POPTR_0005s00950 (11)//POPTR_0056s00230 (11)//POPTR_1122s00200 (11)//POPTR_0056s00220 (9)	scaffold_1122:2325-2475(+) (11)//scaffold_47:78780-78930(-) (11)//scaffold_5:451134-451284(-) (11)//scaffold_5:857549-857699(-) (11)//scaffold_5:1094371-1094521(+) (11)//scaffold_56:15024-25043(+) (11)//scaffold_56:24954-25104(+) (9)	POPTR_0005s01500 (7)//POPTR_0005s01000 (7)//POPTR_0005s01230 (7)	Q42371	LRR receptor-like serine/threonine-protein kinase ERECTA	AT1G74170.1	receptor like protein 13 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166620.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.222596.1.S1_x_at	A	A2TS	POPTR_0056s00230	POPTR_0056s00230 (11)//POPTR_0005s01640 (10)	scaffold_5:1094125-1094633(+) (10)//scaffold_56:14941-25216(+) (11)	POPTR_0056s00220 (6)	Q6XAT2	LRR receptor-like serine/threonine-protein kinase ERL2	AT3G11080.1	receptor like protein 35 	LOC_Os01g72700.1	expressed protein	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.222597.1.S1_at	A	A1TS	POPTR_0056s00230	POPTR_0056s00230 (11)	scaffold_56:23533-23640(+) (11)	NA	Q6XAT2	LRR receptor-like serine/threonine-protein kinase ERL2	AT3G11080.1	receptor like protein 35 	LOC_Os01g72700.1	expressed protein	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.222597.1.S1_s_at	A	A2TS	POPTR_0056s00220	POPTR_0056s00220 (10)//POPTR_0056s00230 (10)	scaffold_5:1055961-1056330(+) (10)//scaffold_5:1091852-1092245(+) (11)//scaffold_56:11659-12046(+) (11)//scaffold_56:23372-23756(+) (11)	POPTR_0005s01610 (8)	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74180.1	receptor like protein 14 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.222598.1.S1_at	A	A2TS	POPTR_0056s00220	POPTR_0056s00220 (11)//POPTR_0005s01640 (10)	scaffold_5:1093545-1093939(+) (10)//scaffold_56:14237-14785(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74180.1	receptor like protein 14 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.222603.1.S1_s_at	A	A1TS	POPTR_0008s00430	POPTR_0008s00430 (11)	scaffold_8:161153-165642(+) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g26070.1	"pentatricopeptide, putative, expressed"	Medtr5g020540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222608.1.S1_s_at	A	A1TS	POPTR_0013s14260	POPTR_0013s14260 (11)	scaffold_13:14534880-14535012(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222609.1.S1_at	A	A1TS	POPTR_0013s14250	POPTR_0013s14250 (11)	scaffold_13:14528773-14529207(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222610.1.S1_at	A	A2TS	POPTR_0013s14240	POPTR_0013s14240 (10)//POPTR_0735s00200 (9)	scaffold_13:14518354-14518879(-) (10)//scaffold_735:759-1284(-) (9)	NA	Q9SKT6	Probable galacturonosyltransferase 10	AT2G20810.1	galacturonosyltransferase 10 	LOC_Os04g54360.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g018990.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.222614.1.S1_at	A	A2MS	POPTR_0005s20720	POPTR_0186s00210 (11)//POPTR_0005s20720 (11)	scaffold_186:12172-12301(-) (11)//scaffold_5:19868430-19868559(+) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g37456.2	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr5g074190.1	"Peptidase aspartic, active site; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.222616.1.S1_at	A	A1TS	POPTR_0186s00200	POPTR_0186s00200 (11)	scaffold_186:3140-3671(+) (11)//scaffold_417:8953-9444(-) (9)//scaffold_889:6873-7364(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222617.1.S1_at	A	A1TS	POPTR_0261s00210	POPTR_0261s00210 (11)	scaffold_261:5865-6142(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222618.1.S1_at	A	A1TS	POPTR_0082s00200	POPTR_0082s00200 (11)	scaffold_82:36985-37147(+) (11)	NA	Q6H4M2	Potassium transporter 19	AT4G13420.1	high affinity K+ transporter 5 	LOC_Os02g31910.2	"potassium transporter, putative, expressed"	Medtr8g025740.1	K+ potassium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222619.1.S1_s_at	A	A2TS	POPTR_0013s08370	POPTR_0511s00200 (11)//POPTR_0013s08370 (11)	scaffold_13:7444335-7444801(-) (11)//scaffold_511:10078-10544(+) (11)	NA	NA	NA	AT5G16460.1	Putative adipose-regulatory protein (Seipin) 	LOC_Os12g05330.1	"protein of unknown function containing protein, expressed"	Medtr7g089670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222621.1.S1_x_at	A	A3TS	POPTR_0017s06100	POPTR_0017s06100 (11)//POPTR_0017s06120 (10)//POPTR_0322s00200 (10)	scaffold_17:4729452-4729616(+) (11)//scaffold_17:4738707-4738871(+) (10)//scaffold_322:15014-15178(-) (10)	POPTR_0017s06080 (8)	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g137110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222622.1.S1_s_at	A	A6TS	POPTR_0006s28400	POPTR_0006s28420 (11)//POPTR_0006s28470 (11)//POPTR_0006s28520 (11)//POPTR_0157s00210 (11)//POPTR_0006s28400 (11)//POPTR_0006s28440 (11)	scaffold_157:11642-12116(-) (11)//scaffold_6:26090293-26090767(+) (11)//scaffold_6:26104667-26105141(+) (11)//scaffold_6:26121706-26122669(+) (11)//scaffold_6:26140922-26141396(+) (11)//scaffold_6:26160151-26160625(+) (11)//scaffold_6:26189048-26189522(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g26000.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.222624.1.S1_at	A	A1TS	POPTR_0001s46910	POPTR_0001s46910 (11)	scaffold_1:47259620-47260204(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.222625.1.S1_at	A	A1TS	POPTR_0001s46920	POPTR_0001s46920 (11)	scaffold_1:47279780-47280662(+) (11)	NA	Q9LU15	Histidine-containing phosphotransfer protein 4	AT3G16360.2	HPT phosphotransmitter 4 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g122150.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.222630.1.S1_s_at	A	A2TS	POPTR_0005s03190	POPTR_0005s03190 (11)//POPTR_0005s03200 (9)	scaffold_5:2084533-2084653(-) (11)//scaffold_5:2102937-2103057(-) (11)	NA	Q40392	TMV resistance protein N	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.222630.1.S1_x_at	A	A1TS	POPTR_0005s03190	POPTR_0005s03190 (11)	scaffold_5:2084125-2084653(-) (11)//scaffold_5:2102529-2103057(-) (11)	NA	Q40392	TMV resistance protein N	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.222631.1.S1_x_at	A	A2TS	POPTR_0005s03200	POPTR_0005s03200 (11)//POPTR_0005s03490 (9)	scaffold_5:2103942-2104240(-) (11)//scaffold_5:2347378-2347639(-) (9)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222632.1.S1_s_at	A	A2TS	POPTR_0018s12000	POPTR_0018s12000 (11)//POPTR_0018s12010 (11)	scaffold_18:12633202-12633564(+) (11)//scaffold_18:12636580-12636942(+) (11)	NA	Q6RY07	Acidic mammalian chitinase	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain 	LOC_Os11g27400.1	"glycosyl hydrolase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.222633.1.S1_at	A	A1TS	POPTR_0007s09420	POPTR_0007s09420 (11)	scaffold_7:8828522-8828756(+) (11)	NA	C5D6U5	2-succinylbenzoate--CoA ligase	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008840.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.222633.1.S1_s_at	A	A1TS	POPTR_0007s09420	POPTR_0007s09420 (11)	scaffold_7:8828395-8828952(+) (11)	NA	C5D6U5	2-succinylbenzoate--CoA ligase	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008840.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.222636.1.S1_s_at	A	A2TS	POPTR_0008s19140	POPTR_0307s00200 (11)//POPTR_0008s19140 (11)	scaffold_307:4615-4698(+) (11)//scaffold_8:13114046-13114129(-) (11)	NA	Q94C27	F-box protein At1g70590	AT1G70590.1	F-box family protein 	LOC_Os04g40030.1	"OsFBO17 - F-box and other domain containing protein, expressed"	Medtr5g034530.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22264.1.S1_at	A	A1TS	POPTR_0005s06040	POPTR_0005s06040 (11)	scaffold_5:3969789-3970687(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G09330.4	NAC domain containing protein 82 	LOC_Os05g35170.2	"no apical meristem protein, putative, expressed"	Medtr3g143500.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.222642.1.S1_s_at	A	A1TS	POPTR_0018s02430	POPTR_0018s02430 (11)	scaffold_18:2200997-2202910(-) (11)	POPTR_0006s27930 (8)	Q8C092	Transcription initiation factor TFIID subunit 5	AT5G25150.1	TBP-associated factor 5 	LOC_Os06g44030.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.222645.1.S1_s_at	A	A1TS	POPTR_0017s01340	POPTR_0017s01340 (11)	scaffold_17:932324-932549(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12450.1	"receptor-like protein kinase 2 precursor, putative"	Medtr5g026330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.222646.1.S1_at	A	A1TS	POPTR_0017s01330	POPTR_0017s01330 (11)	scaffold_17:924218-925691(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222647.1.S1_at	A	A1TS	POPTR_1134s00200	POPTR_1134s00200 (11)	scaffold_1134:1033-1085(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222648.1.S1_s_at	A	A1TS	POPTR_0017s01320	POPTR_0017s01320 (10)	scaffold_1134:1511-1699(+) (11)//scaffold_17:919816-920004(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g155760.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222649.1.S1_at	A	A1TS	POPTR_0017s01320	POPTR_0017s01320 (10)	scaffold_17:920137-920490(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g155760.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222655.1.S1_s_at	A	A1TS	POPTR_0017s12260	POPTR_0017s12260 (11)	scaffold_17:12481287-12482768(-) (11)	NA	Q9LJW0	Phosphate transporter PHO1 homolog 9	AT3G29060.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	GO:0001539|ciliary or flagellar motility	GO:0005198|structural molecule activity||GO:0003774|motor activity	GO:0016021|integral to membrane||GO:0009288|bacterial-type flagellum||GO:0043232|intracellular non-membrane-bounded organelle
PtpAffx.222656.1.S1_at	A	A1MS	POPTR_0017s12270	POPTR_0017s12270 (11)	scaffold_17:12490609-12490725(+) (11)	NA	O35587	Transmembrane protein Tmp21	AT1G26690.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.222658.1.S1_at	A	A1TS	POPTR_0305s00200	POPTR_0305s00200 (11)	scaffold_17:12501265-12504831(-) (11)//scaffold_305:3910-4058(-) (11)//scaffold_305:6457-10632(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222663.1.S1_at	A	A1TS	POPTR_0005s06150	POPTR_0005s06150 (11)	scaffold_5:4047155-4047698(-) (11)	NA	Q9M9Q6	Serine carboxypeptidase-like 50	AT1G15000.1	serine carboxypeptidase-like 50 	LOC_Os05g50600.1	"OsSCP31 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr5g104840.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.222664.1.S1_at	A	A1TS	POPTR_0005s06130	POPTR_0005s06130 (11)	scaffold_5:4031138-4031885(-) (11)	NA	P99177	Probable cysteine desulfurase	NA	NA	LOC_Os12g08850.1	expressed protein	Medtr4g142640.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222666.1.S1_at	A	A1TS	POPTR_0005s06110	POPTR_0005s06110 (11)	scaffold_5:4025586-4026120(+) (11)	NA	O19922	ATP-dependent zinc metalloprotease FtsH	AT5G64580.1	AAA-type ATPase family protein 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr3g143610.1	"Flagellar basal body rod protein; AAA ATPase, central region; Peptidase M41, FtsH extracellular "	NA	GO:0005524|ATP binding	NA
PtpAffx.222667.1.S1_at	A	A1TS	POPTR_0005s06110	POPTR_0005s06110 (11)	scaffold_5:4022441-4023098(+) (11)	NA	O19922	ATP-dependent zinc metalloprotease FtsH	AT5G64580.1	AAA-type ATPase family protein 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr3g143610.1	"Flagellar basal body rod protein; AAA ATPase, central region; Peptidase M41, FtsH extracellular "	NA	GO:0005524|ATP binding	NA
PtpAffx.222668.1.S1_at	A	A1TS	POPTR_0005s06100	POPTR_0005s06100 (11)	scaffold_5:4017091-4018288(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G64600.1	O-fucosyltransferase family protein 	LOC_Os12g08820.2	"growth regulator related protein, putative, expressed"	Medtr3g143590.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222669.1.S1_at	A	A2TS	POPTR_0005s06080	POPTR_0005s06080 (11)//POPTR_0231s00240 (9)	scaffold_231:17827-18360(+) (10)//scaffold_5:4001241-4001824(+) (11)	NA	Q7M443	Chitinase 2	NA	NA	LOC_Os10g28050.1	"chitinase 2, putative, expressed"	Medtr6g089840.1	"Glycoside hydrolase, chitinase active site; Ribosomal protein S2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222670.1.S1_at	A	A1MS	POPTR_0231s00230	POPTR_0231s00230 (10)	scaffold_231:14446-14727(+) (11)//scaffold_5:3997550-3997831(+) (9)	NA	Q9S9M1	Wall-associated receptor kinase-like 5	AT1G16160.1	wall associated kinase-like 5 	LOC_Os04g51030.1	"wall-associated kinase 1, putative, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222670.1.S1_x_at	A	A1MS	POPTR_0231s00230	POPTR_0231s00230 (10)	scaffold_231:14369-14727(+) (11)//scaffold_5:3997473-3997831(+) (10)	NA	Q9S9M1	Wall-associated receptor kinase-like 5	AT1G16160.1	wall associated kinase-like 5 	LOC_Os04g51030.1	"wall-associated kinase 1, putative, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222671.1.S1_at	A	A1TS	POPTR_0005s06070	POPTR_0005s06070 (9)	scaffold_5:3996004-3996386(+) (11)	POPTR_0231s00220 (8)	Q56078	Periplasmic beta-glucosidase	AT5G04885.1	Glycosyl hydrolase family protein 	LOC_Os03g53800.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.222672.1.S1_at	A	A1TS	POPTR_0231s00210	POPTR_0231s00210 (11)	scaffold_231:4919-6827(-) (11)	NA	B3H5Q1	Beta-glucosidase 11	AT3G18070.2	beta glucosidase 43 	LOC_Os09g31410.2	"Os9bglu29 - beta-glucosidase homologue, similar to Os4bglu12 exoglucanase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222673.1.S1_at	A	A1TS	POPTR_0005s06040	POPTR_0005s06040 (11)	scaffold_5:3971133-3971480(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G09330.4	NAC domain containing protein 82 	LOC_Os05g35170.2	"no apical meristem protein, putative, expressed"	Medtr3g143500.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.222674.1.S1_at	A	A1TS	POPTR_0005s06030	POPTR_0005s06030 (11)	scaffold_5:3967316-3968097(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g08700.1	expressed protein	Medtr4g142680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222674.1.S1_x_at	A	A1TS	POPTR_0005s06030	POPTR_0005s06030 (11)	scaffold_5:3967316-3968188(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g08700.1	expressed protein	Medtr4g142680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222676.1.S1_at	A	A1TS	POPTR_0005s05970	POPTR_0005s05970 (11)	scaffold_5:3939042-3940397(+) (11)	NA	Q3B724	Callose synthase 5	AT2G13680.1	callose synthase 5 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.222677.1.S1_at	A	A1TS	POPTR_0005s05940	POPTR_0005s05940 (11)	scaffold_5:3899734-3900640(+) (11)	NA	Q8VZJ1	Histone-lysine N-methyltransferase ATXR5	AT5G09790.1	ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 	LOC_Os01g73460.1	"ATXR, putative, expressed"	Medtr3g143770.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222677.1.S1_s_at	A	A2TS	POPTR_0005s05940	POPTR_0005s05940 (11)//POPTR_0007s03790 (11)	scaffold_5:3899720-3900164(+) (11)//scaffold_7:2213469-2213910(+) (11)	NA	Q8VZJ1	Histone-lysine N-methyltransferase ATXR5	AT5G09790.1	ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 	LOC_Os01g73460.1	"ATXR, putative, expressed"	Medtr3g143770.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222678.1.S1_at	A	A1TS	POPTR_0005s05920	POPTR_0005s05920 (11)	scaffold_5:3891695-3892230(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr5g098460.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222679.1.S1_at	A	A1TS	POPTR_0005s05890	POPTR_0005s05890 (11)	scaffold_5:3870819-3871204(+) (11)	NA	Q6LA54	Uncharacterized WD repeat-containing protein C3H5.08c	AT1G48870.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g34080.1	"WD-40 repeat family protein, putative, expressed"	Medtr4g142410.1	WD-40 repeat family protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222680.1.S1_at	A	A1TS	POPTR_0005s05880	POPTR_0005s05880 (11)	scaffold_5:3851091-3851655(+) (11)	NA	Q9LXE3	U-box domain-containing protein 28	AT5G09800.1	ARM repeat superfamily protein 	LOC_Os02g33680.1	"U-box domain containing protein, expressed"	Medtr4g142430.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.222681.1.S1_at	A	A1TS	POPTR_0005s05870	POPTR_0005s05870 (11)	scaffold_5:3834750-3834858(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g143990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222684.1.S1_at	A	A1TS	POPTR_0005s05800	POPTR_0005s05800 (10)	scaffold_5:3794904-3795509(-) (10)	NA	NA	NA	NA	NA	LOC_Os08g43350.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222685.1.S1_at	A	A1TS	POPTR_0005s05795	POPTR_0005s05795 (11)	scaffold_5:3793150-3793474(-) (11)	NA	NA	NA	AT1G01225.1	NC domain-containing protein-related 	LOC_Os08g43350.1	"NC domain-containing protein, putative, expressed"	Medtr3g086190.1	Nitrite and sulfite reductase iron-sulfur/siroheme-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222686.1.S1_at	A	A1TS	POPTR_0005s05790	POPTR_0005s05790 (11)	scaffold_5:3790676-3792552(+) (11)	NA	P57722	Poly(rC)-binding protein 3	AT3G04610.1	RNA-binding KH domain-containing protein 	LOC_Os03g42900.1	"KH domain containing protein, putative, expressed"	Medtr8g129730.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.222687.1.S1_at	A	A1MS	POPTR_0005s05790	POPTR_0005s05790 (11)	scaffold_5:3786196-3786648(+) (11)	NA	P57722	Poly(rC)-binding protein 3	AT3G04610.1	RNA-binding KH domain-containing protein 	LOC_Os03g42900.1	"KH domain containing protein, putative, expressed"	Medtr8g129730.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.222687.1.S1_s_at	A	A1MS	POPTR_0005s05790	POPTR_0005s05790 (11)	scaffold_5:3786137-3786537(+) (11)	NA	P57722	Poly(rC)-binding protein 3	AT3G04610.1	RNA-binding KH domain-containing protein 	LOC_Os03g42900.1	"KH domain containing protein, putative, expressed"	Medtr8g129730.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.222688.1.S1_at	A	A1TS	POPTR_0005s05780	POPTR_0005s05780 (11)	scaffold_5:3780000-3781713(+) (11)	NA	O22969	Uncharacterized protein At2g34160	AT3G04620.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.222689.1.S1_s_at	A	A1TS	POPTR_0005s05760	POPTR_0005s05760 (11)	scaffold_5:3759449-3760748(-) (11)	NA	NA	NA	AT3G04650.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os12g40540.1	"FAD dependent oxidoreductase, putative, expressed"	Medtr2g077110.1	Amine oxidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222690.1.S1_at	A	A1TS	POPTR_0005s05750	POPTR_0005s05750 (11)	scaffold_5:3758313-3758677(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222691.1.S1_at	A	A1TS	POPTR_0005s05680	POPTR_0005s05680 (11)	scaffold_5:3728370-3728868(-) (11)	NA	NA	NA	AT1G08790.1	Protein of unknown function (DUF1685) 	LOC_Os04g21340.1	expressed protein	Medtr5g017390.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222692.1.S1_at	A	A1TS	POPTR_0005s05660	POPTR_0005s05660 (11)	scaffold_5:3723519-3724262(+) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	NA	NA	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr8g088950.1	Rh-like protein/ammonium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222695.1.S1_at	A	A1TS	POPTR_0005s05590	POPTR_0005s05590 (11)	scaffold_5:3693830-3695058(+) (11)	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117530.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222697.1.S1_at	A	A1TS	POPTR_0005s05520	POPTR_0005s05520 (11)	scaffold_5:3651976-3652092(-) (11)	NA	P0CB66	Putative mediator of RNA polymerase II transcription subunit 14	AT3G04740.1	RNA polymerase II transcription mediators 	LOC_Os09g10960.1	"SWP, putative, expressed"	Medtr1g106750.1	"SWP, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.222697.1.S1_x_at	A	A1TS	POPTR_0005s05520	POPTR_0005s05520 (11)	scaffold_5:3651947-3652226(-) (11)	NA	P0CB66	Putative mediator of RNA polymerase II transcription subunit 14	AT3G04740.1	RNA polymerase II transcription mediators 	LOC_Os09g10960.1	"SWP, putative, expressed"	Medtr1g106750.1	"SWP, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.222698.1.S1_at	A	A1TS	POPTR_0005s05510	POPTR_0005s05510 (11)	scaffold_5:3650050-3650613(+) (11)	NA	Q9SR01	"Pentatricopeptide repeat-containing protein At3g04750, mitochondrial"	AT3G04750.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g53170.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222699.1.S1_at	A	A1TS	POPTR_0005s05500	POPTR_0005s05500 (11)	scaffold_5:3643081-3644849(+) (11)	NA	O22768	Transcription factor UNE12	AT4G02590.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g58330.1	"BHLH transcription factor, putative, expressed"	Medtr1g083450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.222699.1.S1_x_at	A	A1TS	POPTR_0005s05500	POPTR_0005s05500 (11)	scaffold_5:3643060-3644849(+) (11)	NA	O22768	Transcription factor UNE12	AT4G02590.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g58330.1	"BHLH transcription factor, putative, expressed"	Medtr1g083450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.222700.1.S1_at	A	A1TS	POPTR_0005s05480	POPTR_0005s05480 (11)	scaffold_5:3625679-3626040(-) (11)	NA	NA	NA	AT4G12540.1	unknown protein; Has 29 Blast hits to 26 proteins in 11 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g45580.1	expressed protein	Medtr8g015990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222701.1.S1_at	A	A1TS	POPTR_0005s05460	POPTR_0005s05460 (11)	scaffold_5:3615549-3616794(+) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117180.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.222702.1.S1_at	A	A1TS	POPTR_0005s05410	POPTR_0005s05410 (10)	scaffold_5:3568065-3568911(-) (10)	NA	P40691	Auxin-induced protein PCNT115	AT1G60680.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g28320.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g140850.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.222703.1.S1_at	A	A1TS	POPTR_0005s05390	POPTR_0005s05390 (9)	scaffold_5:3559748-3560514(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222704.1.S1_at	A	A1TS	POPTR_0005s05330	POPTR_0005s05330 (11)	scaffold_5:3532007-3532588(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT5G28300.1	Duplicated homeodomain-like superfamily protein 	LOC_Os02g43300.1	expressed protein	Medtr1g096240.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222705.1.S1_at	A	A1TS	POPTR_0005s05310	POPTR_0005s05310 (11)	scaffold_5:3513584-3514506(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT4G14750.1	IQ-domain 19 	LOC_Os10g28420.1	"IQ calmodulin-binding motif family protein, putative"	Medtr7g140730.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222706.1.S1_at	A	A1TS	POPTR_0005s05300	POPTR_0005s05300 (11)	scaffold_5:3511333-3512503(+) (11)	NA	Q08647	Multisubstrate pseudouridine synthase 7	AT3G04820.1	Pseudouridine synthase family protein 	LOC_Os01g56620.1	"pseudouridylate synthase, putative, expressed"	Medtr7g140700.1	"RNA binding ^, related "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.222707.1.S1_at	A	A1TS	POPTR_0005s05270	POPTR_0005s05270 (11)	scaffold_5:3487104-3487688(+) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222708.1.S1_at	A	A1TS	POPTR_0005s05240	POPTR_0005s05240 (11)	scaffold_5:3469585-3470997(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222709.1.S1_at	A	A1TS	POPTR_0005s05230	POPTR_0005s05230 (11)	scaffold_5:3459401-3459707(-) (11)	NA	Q9SE20	"Zeta-carotene desaturase, chloroplastic/chromoplastic"	AT3G04870.2	zeta-carotene desaturase 	LOC_Os07g10490.1	"zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed"	Medtr1g096350.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.222710.1.S1_at	A	A1TS	POPTR_0005s05220	POPTR_0005s05220 (11)	scaffold_5:3457472-3457586(+) (11)	NA	Q05212	DNA-damage-repair/toleration protein DRT102	AT3G04880.1	DNA-damage-repair/toleration protein (DRT102) 	LOC_Os01g36090.1	"DNA-damage-repair/toleration protein DRT102, putative, expressed"	Medtr7g140600.1	Ribose/galactose isomerase; Cupin region 	GO:0005975|carbohydrate metabolic process	NA	NA
PtpAffx.222710.1.S1_s_at	A	A1TS	POPTR_0005s05220	POPTR_0005s05220 (11)	scaffold_5:3457205-3457695(+) (11)	NA	Q05212	DNA-damage-repair/toleration protein DRT102	AT3G04880.1	DNA-damage-repair/toleration protein (DRT102) 	LOC_Os01g36090.1	"DNA-damage-repair/toleration protein DRT102, putative, expressed"	Medtr7g140600.1	Ribose/galactose isomerase; Cupin region 	GO:0005975|carbohydrate metabolic process	NA	NA
PtpAffx.222711.1.S1_s_at	A	A1TS	POPTR_0005s05160	POPTR_0005s05160 (11)	scaffold_5:3436352-3436929(+) (11)	NA	NA	NA	AT5G28150.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr3g115140.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222713.1.S1_at	A	A1TS	POPTR_0005s05150	POPTR_0005s05150 (11)	scaffold_5:3432353-3432695(+) (11)	NA	NA	NA	AT1G54530.1	Calcium-binding EF hand family protein 	LOC_Os03g29770.1	"EF hand family protein, expressed"	Medtr1g096330.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222714.1.S1_at	A	A1TS	POPTR_0005s05140	POPTR_0005s05140 (11)	scaffold_5:3418997-3419621(-) (11)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222715.1.S1_s_at	A	A1TS	POPTR_0005s05140	POPTR_0005s05140 (11)	scaffold_5:3418206-3418693(-) (11)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222717.1.S1_at	A	A1TS	POPTR_0005s05050	POPTR_0005s05050 (11)	scaffold_5:3360072-3360637(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222718.1.S1_at	A	A1TS	POPTR_0005s05010	POPTR_0005s05010 (11)	scaffold_5:3342627-3342692(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222721.1.S1_at	A	A1TS	POPTR_0005s04970	POPTR_0005s04970 (11)	scaffold_5:3323270-3323548(-) (11)	NA	NA	NA	AT5G27970.1	ARM repeat superfamily protein 	LOC_Os01g56590.1	"guanine nucleotide exchange family protein, putative, expressed"	Medtr1g096700.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222723.1.S1_at	A	A1TS	POPTR_0005s04930	POPTR_0005s04930 (11)	scaffold_5:3302622-3303046(-) (11)	NA	Q38944	Probable steroid reductase DET2	AT2G38050.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os01g63260.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr6g041190.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.222724.1.S1_at	A	A1TS	POPTR_0005s04920	POPTR_0005s04920 (11)	scaffold_5:3298777-3299279(-) (11)	NA	Q01745	Galactose oxidase	AT3G57620.1	glyoxal oxidase-related protein 	LOC_Os03g15320.1	"glyoxal oxidase-related, putative, expressed"	Medtr7g140410.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222725.1.S1_at	A	A1TS	POPTR_0005s04900	POPTR_0005s04900 (11)	scaffold_5:3266812-3267857(+) (11)	NA	Q8GYD9	Probable RNA helicase SDE3	AT1G05460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g06440.2	"RNA helicase SDE3, putative, expressed"	Medtr5g007020.1	"DEAD-like helicase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222726.1.S1_at	A	A1TS	POPTR_0005s04870	POPTR_0005s04870 (9)	scaffold_5:3253982-3254430(+) (10)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os03g06910.1	PPR repeat containing protein	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222727.1.S1_at	A	A1TS	POPTR_0005s04840	POPTR_0005s04840 (11)	scaffold_5:3240702-3241857(-) (11)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222728.1.S1_at	A	A1TS	POPTR_0005s04820	POPTR_0005s04820 (11)	scaffold_5:3235119-3237704(+) (11)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222729.1.S1_at	A	A1TS	POPTR_0005s04810	POPTR_0005s04810 (11)	scaffold_5:3222662-3225094(+) (11)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222730.1.S1_at	A	A1TS	POPTR_0005s04740	POPTR_0005s04740 (9)	scaffold_5:3180925-3181736(-) (10)	NA	Q9SBK6	Jasmonate O-methyltransferase	AT3G11480.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50610.1	"SAM dependent carboxyl methyltransferase, putative, expressed"	Medtr8g092980.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.222731.1.S1_s_at	A	A1TS	POPTR_0005s04720	POPTR_0005s04720 (11)	scaffold_5:3166407-3167469(-) (11)	NA	NA	NA	AT3G26932.2	dsRNA-binding protein 3 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.222731.1.S1_x_at	A	A1TS	POPTR_0005s04720	POPTR_0005s04720 (10)	scaffold_5:3166276-3167630(-) (10)	NA	NA	NA	AT3G26932.2	dsRNA-binding protein 3 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.222733.1.S1_s_at	A	A1TS	POPTR_0005s04660	POPTR_0005s04660 (10)	scaffold_5:3121317-3121864(-) (11)	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr8g139670.1	Sodium/hydrogen exchanger subfamily 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.222734.1.S1_at	A	A1TS	POPTR_0005s04570	POPTR_0005s04570 (11)	scaffold_5:3065549-3066006(-) (11)	NA	NA	NA	AT5G27220.1	Frigida-like protein 	NA	NA	Medtr2g111580.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222736.1.S1_s_at	A	A1TS	POPTR_0005s04530	POPTR_0005s04530 (11)	scaffold_5:3032390-3032751(-) (11)	NA	NA	NA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07360.2	"frigida, putative, expressed"	Medtr2g132640.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222737.1.S1_at	A	A2TS	POPTR_0005s04540	POPTR_0005s04540 (10)//POPTR_0005s04560 (9)	scaffold_5:3039804-3040187(-) (10)//scaffold_5:3062452-3062835(-) (9)	POPTR_0005s04550 (6)	Q9FDW0	Protein FRIGIDA	AT5G27230.1	Frigida-like protein 	LOC_Os07g40270.1	"frigida, putative, expressed"	Medtr3g128210.1	Prefoldin; Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222738.1.S1_at	A	A1TS	POPTR_0005s04530	POPTR_0005s04530 (10)	scaffold_5:3030455-3031095(-) (10)	NA	NA	NA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07360.2	"frigida, putative, expressed"	Medtr2g132640.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222739.1.S1_s_at	A	A1TS	POPTR_0005s04520	POPTR_0005s04520 (11)	scaffold_5:3024442-3024931(-) (11)	NA	C0LGD6	Probable LRR receptor-like serine/threonine-protein kinase At1g05700	AT1G51790.1	Leucine-rich repeat protein kinase family protein 	LOC_Os05g44970.1	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative"	Medtr8g016230.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.222740.1.S1_at	A	A1TS	POPTR_0005s04510	POPTR_0005s04510 (10)	scaffold_5:3018261-3019091(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222741.1.S1_at	A	A1TS	POPTR_0005s04500	POPTR_0005s04500 (11)	scaffold_5:3013091-3013581(-) (11)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os02g41930.1	OsFBX57 - F-box domain containing protein	Medtr3g044120.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222742.1.S1_at	A	A1TS	POPTR_0005s04480	POPTR_0005s04480 (11)	scaffold_5:3000080-3000855(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os01g27750.1	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	NA	GO:0003855|3-dehydroquinate dehydratase activity	NA
PtpAffx.222743.1.S1_s_at	A	A2TS	POPTR_0005s04460	POPTR_0005s04460 (11)//POPTR_0005s04420 (9)	scaffold_5:2962039-2962588(-) (9)//scaffold_5:2981604-2982214(-) (11)	NA	P37707	B2 protein	AT2G32910.1	DCD (Development and Cell Death) domain protein 	LOC_Os02g51140.1	"N-rich protein, putative, expressed"	Medtr3g151330.1	Kelch related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222745.1.S1_at	A	A2TS	POPTR_0005s04310	POPTR_0005s04310 (11)//POPTR_0019s12960 (9)	scaffold_19:13987723-13988216(-) (9)//scaffold_5:2885968-2886487(+) (11)//scaffold_5:2923551-2924046(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222746.1.S1_s_at	A	A2TS	POPTR_0005s04360	POPTR_0369s00230 (9)//POPTR_0005s04360 (9)	scaffold_369:17614-17656(+) (9)//scaffold_5:2929239-2929281(+) (9)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222746.1.S1_x_at	A	A1TS	POPTR_0369s00230	POPTR_0369s00230 (11)	scaffold_369:17380-17781(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222747.1.S1_at	A	A2TS	POPTR_0369s00220	POPTR_0369s00220 (11)//POPTR_0005s04280 (9)	scaffold_369:11938-13700(+) (11)//scaffold_5:2869768-2871531(+) (10)	NA	Q3EBC2	Probable S-acyltransferase At3g04970	AT3G04970.2	DHHC-type zinc finger family protein 	LOC_Os03g24900.1	"DHHC zinc finger domain containing protein, expressed"	Medtr7g139870.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.222748.1.S1_at	A	A1TS	POPTR_0005s04230	POPTR_0005s04230 (11)	scaffold_5:2843901-2844312(+) (11)	NA	NA	NA	AT5G27330.1	Prefoldin chaperone subunit family protein 	NA	NA	Medtr1g098770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222749.1.S1_at	A	A1TS	POPTR_0005s04210	POPTR_0005s04210 (11)	scaffold_5:2829030-2829501(+) (11)	NA	Q8CCN5	Breast carcinoma-amplified sequence 3 homolog	AT1G54710.1	homolog of yeast autophagy 18 (ATG18) H 	LOC_Os05g33610.1	expressed protein	Medtr1g098850.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222750.1.S1_at	A	A1TS	POPTR_0005s04200	POPTR_0005s04200 (11)	scaffold_5:2818772-2819249(-) (11)	NA	P93050	Probable LRR receptor-like serine/threonine-protein kinase RKF3	AT2G48010.1	receptor-like kinase in in flowers 3 	LOC_Os01g28730.1	"protein kinase domain containing protein, expressed"	Medtr2g006900.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222751.1.S1_at	A	A1TS	POPTR_0005s04180	POPTR_0005s04180 (11)	scaffold_5:2807844-2808848(-) (11)	NA	Q3ECP7	Sugar transporter ERD6-like 5	AT1G54730.2	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr7g139770.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.222752.1.S1_at	A	A1TS	POPTR_0005s04170	POPTR_0005s04170 (9)	scaffold_5:2793631-2794375(-) (11)	NA	Q94CI7	Sugar transporter ERD6-like 17	AT5G27350.1	Major facilitator superfamily protein 	LOC_Os03g24860.1	"transporter family protein, putative, expressed"	Medtr7g139770.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.222753.1.S1_at	A	A2TS	POPTR_0526s00230	POPTR_0526s00230 (11)//POPTR_0005s04130 (10)	scaffold_5:2733523-2733567(+) (10)//scaffold_526:244-288(-) (10)//scaffold_526:11788-11839(-) (11)	NA	Q8W0Z7	Branched-chain-amino-acid aminotransferase-like protein 1	AT5G27410.2	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os03g24460.2	"aminotransferase domain containing protein, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222754.1.S1_at	A	A1TS	POPTR_0005s04120	POPTR_0005s04120 (11)	scaffold_5:2722668-2723345(+) (11)	NA	Q96G04	Protein FAM86A	AT5G27400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g05130.1	"GA20663-PA, putative, expressed"	Medtr7g139610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222756.1.S1_at	A	A1TS	POPTR_0005s04100	POPTR_0005s04100 (11)	scaffold_5:2709874-2710005(-) (11)	NA	Q3ECP6	GDSL esterase/lipase At1g54790	AT1G54790.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os05g33270.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g139630.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.222756.1.S1_x_at	A	A1TS	POPTR_0005s04100	POPTR_0005s04100 (11)	scaffold_5:2709874-2710005(-) (11)	NA	Q3ECP6	GDSL esterase/lipase At1g54790	AT1G54790.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os05g33270.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g139630.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.222758.1.S1_at	A	A1TS	POPTR_0005s04070	POPTR_0005s04070 (11)	scaffold_5:2699185-2699784(-) (11)	NA	Q0WKV3	"Pentatricopeptide repeat-containing protein At1g12300, mitochondrial"	AT1G12300.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g42880.1	"PPR repeat containing protein, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222759.1.S1_at	A	A1TS	POPTR_0005s04060	POPTR_0005s04060 (11)	scaffold_5:2695449-2696007(-) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222762.1.S1_at	A	A1TS	POPTR_0005s04020	POPTR_0005s04020 (11)	scaffold_5:2679533-2679848(+) (11)	NA	Q99288	Putative phosphoglycerate mutase DET1	AT3G05170.1	Phosphoglycerate mutase family protein 	LOC_Os05g04960.1	"phosphoglycerate mutase, putative, expressed"	Medtr1g098920.1	Phosphoglycerate/bisphosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222763.1.S1_at	A	A1TS	POPTR_0005s03990	POPTR_0005s03990 (11)	scaffold_5:2661880-2663466(-) (11)	NA	Q54S52	Transmembrane protein DDB_G0282801	AT2G48060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os01g29230.1	expressed protein	Medtr7g139720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222764.1.S1_at	A	A1TS	POPTR_0005s03990	POPTR_0005s03990 (11)	scaffold_5:2655983-2656329(-) (11)	NA	Q54S52	Transmembrane protein DDB_G0282801	AT2G48060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os01g29230.1	expressed protein	Medtr7g139720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222765.1.S1_at	A	A1TS	POPTR_0005s03990	POPTR_0005s03990 (10)	scaffold_5:2653092-2654077(-) (10)	NA	Q54S52	Transmembrane protein DDB_G0282801	AT2G48060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os01g29230.1	expressed protein	Medtr7g139720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222766.1.S1_at	A	A1TS	POPTR_0005s03980	POPTR_0005s03980 (11)	scaffold_5:2650242-2650745(+) (11)	NA	NA	NA	AT1G54740.1	Protein of unknown function (DUF3049) 	NA	NA	Medtr7g139750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222767.1.S1_at	A	A1TS	POPTR_0005s03960	POPTR_0005s03960 (11)	scaffold_5:2636642-2637452(-) (11)	POPTR_0005s03920 (8)	O04036	Sugar transporter ERD6	AT1G08930.2	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr7g139760.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222767.1.S1_s_at	A	A2TS	POPTR_0005s03920	POPTR_0005s03920 (11)//POPTR_0005s03960 (11)	scaffold_5:2600010-2600722(+) (11)//scaffold_5:2636702-2637411(-) (11)	NA	Q94KE0	Sugar transporter ERD6-like 3	AT1G08920.1	ERD (early response to dehydration) six-like 1 	LOC_Os03g24860.1	"transporter family protein, putative, expressed"	Medtr7g139770.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.222768.1.S1_s_at	A	A2TS	POPTR_0005s03940	POPTR_0005s03940 (11)//POPTR_0005s03950 (11)	scaffold_5:2609558-2609945(-) (11)//scaffold_5:2629997-2630384(+) (11)	NA	P93149	Licodione synthase	AT5G06900.1	"cytochrome P450, family 93, subfamily D, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g018110.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.222771.1.S1_at	A	A1TS	POPTR_0005s03920	POPTR_0005s03920 (11)	scaffold_5:2599377-2600015(+) (11)	NA	Q94KE0	Sugar transporter ERD6-like 3	AT1G08920.1	ERD (early response to dehydration) six-like 1 	LOC_Os03g24860.1	"transporter family protein, putative, expressed"	Medtr7g139770.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.222772.1.S1_at	A	A1TS	POPTR_0005s03910	POPTR_0005s03910 (11)	scaffold_5:2594801-2595023(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222773.1.S1_at	A	A1TS	POPTR_0005s03890	POPTR_0005s03890 (11)	scaffold_5:2578906-2579637(-) (11)	NA	Q9MA98	DNA excision repair protein ERCC-1	AT3G05210.1	"nucleotide repair protein, putative "	LOC_Os10g37490.1	"DNA excision repair protein ERCC-1, putative, expressed"	Medtr1g099210.1	DNA repair protein rad10; RuvA domain 2-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004519|endonuclease activity||GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.222774.1.S1_at	A	A1TS	POPTR_0005s03870	POPTR_0005s03870 (11)	scaffold_5:2570637-2572557(+) (11)	NA	Q5I0K7	UDP-N-acetylglucosamine transferase subunit ALG13 homolog	AT4G16710.2	glycosyltransferase family protein 28 	LOC_Os02g26814.1	"UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed"	Medtr3g142970.1	"Glycosyltransferase 28, C-terminal "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0030246|carbohydrate binding||GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.222775.1.S1_at	A	A1TS	POPTR_0005s03820	POPTR_0005s03820 (11)	scaffold_5:2538845-2539431(+) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT2G15480.2	UDP-glucosyl transferase 73B5 	LOC_Os06g39070.1	"UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222776.1.S1_at	A	A1TS	POPTR_0005s03800	POPTR_0005s03800 (11)	scaffold_5:2537239-2537468(+) (11)	NA	Q9CA54	Pentatricopeptide repeat-containing protein At1g74630	AT1G74630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g05560.1	conserved hypothetical protein	Medtr8g112300.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222777.1.S1_at	A	A1TS	POPTR_0005s03810	POPTR_0005s03810 (11)	scaffold_5:2536084-2536754(-) (11)	NA	NA	NA	AT4G02210.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222778.1.S1_at	A	A1TS	POPTR_0005s03800	POPTR_0005s03800 (11)	scaffold_5:2535342-2535904(+) (11)	NA	Q9CA54	Pentatricopeptide repeat-containing protein At1g74630	AT1G74630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g05560.1	conserved hypothetical protein	Medtr8g112300.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222779.1.S1_at	A	A1TS	POPTR_0005s03780	POPTR_0005s03780 (11)	scaffold_5:2525003-2525483(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os04g46300.1	"disease resistance protein RPM1, putative, expressed"	Medtr3g015730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222780.1.S1_s_at	A	A2TS	POPTR_0005s03770	POPTR_0005s03770 (11)//POPTR_0258s00210 (9)	scaffold_258:13736-14941(+) (9)//scaffold_5:2508439-2509651(-) (11)	NA	Q9NS56	E3 ubiquitin-protein ligase Topors	AT3G05250.1	RING/U-box superfamily protein 	LOC_Os03g59540.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099360.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222781.1.S1_at	A	A1TS	POPTR_0005s03760	POPTR_0005s03760 (11)	scaffold_258:17588-18118(-) (11)//scaffold_5:2505363-2505893(+) (11)	POPTR_0258s00220 (8)	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr3g015730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222782.1.S1_at	A	A1TS	POPTR_0005s03730	POPTR_0005s03730 (11)	scaffold_5:2490168-2490450(-) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT1G54860.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222783.1.S1_s_at	A	A1TS	POPTR_0005s03700	POPTR_0005s03700 (11)	scaffold_5:2476564-2476886(-) (11)	NA	NA	NA	AT1G54920.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os11g05100.1	"nucleolar GTPase, putative, expressed"	Medtr1g099450.2	"nucleolar GTPase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222784.1.S1_at	A	A1TA	POPTR_0005s03660	POPTR_0005s03660 (10)	scaffold_5:2441331-2441969(-) (11)	NA	Q75HV0	Cyclin-P3-1	AT3G05327.1	Cyclin family protein 	LOC_Os05g33040.3	"cyclin, putative, expressed"	AC202489_33.1	Cyclin-like AC202489.10 140272-141893 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222785.1.S1_at	A	A1TS	POPTR_0005s03640	POPTR_0005s03640 (11)	scaffold_5:2424502-2425150(-) (11)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT1G09000.1	NPK1-related protein kinase 1 	LOC_Os09g21510.1	"STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr7g139260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222786.1.S1_at	A	A1TS	POPTR_0005s03630	POPTR_0005s03630 (11)	scaffold_5:2423559-2423886(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222787.1.S1_at	A	A1TS	POPTR_0005s03600	POPTR_0005s03600 (11)	scaffold_5:2414457-2415070(+) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT1G70650.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os07g22024.1	"zinc finger family protein, putative, expressed"	Medtr7g139130.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.222788.1.S1_at	A	A1TS	POPTR_0005s03590	POPTR_0005s03590 (11)	scaffold_5:2409060-2409711(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222789.1.S1_at	A	A1MS	POPTR_0005s03580	POPTR_0005s03580 (10)	scaffold_2581:1789-2295(+) (9)//scaffold_5:2402341-2402841(+) (10)	NA	Q06327	Lipoxygenase 1	AT1G55020.1	lipoxygenase 1 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr7g139190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.222790.1.S1_x_at	A	A1TS	POPTR_0001s24230	POPTR_0001s24230 (10)	scaffold_1:21959461-21959536(-) (10)//scaffold_1:23580133-23580208(-) (10)//scaffold_1152:3404-3598(+) (11)//scaffold_12:1293072-1293266(+) (11)//scaffold_17:1711608-1711683(-) (10)//scaffold_17:7943228-7943422(+) (11)//scaffold_178:22645-22720(-) (10)//scaffold_18:10385039-10385114(+) (10)//scaffold_19:14692201-14692395(+) (11)//scaffold_5:2903898-2904092(+) (11)//scaffold_60:36322-36516(-) (11)//scaffold_739:7736-7930(-) (10)//scaffold_8:426221-426415(+) (11)//scaffold_9:10777944-10778019(-) (10)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os02g37790.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.222791.1.S1_s_at	A	A1TS	POPTR_0005s03540	POPTR_0005s03540 (11)	scaffold_5:2372888-2373065(+) (11)	NA	Q99JR6	Nicotinamide mononucleotide adenylyltransferase 3	AT5G55810.1	nicotinate/nicotinamide mononucleotide adenyltransferase 	LOC_Os02g56980.1	"cytidylyltransferase domain containing protein, expressed"	Medtr5g103570.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.222793.1.S1_at	A	A1TS	POPTR_0005s03170	POPTR_0005s03170 (9)	scaffold_5:2076155-2076251(-) (9)	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT3G12610.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g12400.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g009400.1	"Tyrosine protein kinase, active site "	NA	GO:0005515|protein binding	NA
PtpAffx.222796.1.S1_x_at	A	A1TS	POPTR_0005s03330	POPTR_0005s03330 (9)	scaffold_5:2183248-2183618(-) (9)	POPTR_0005s03020 (6)	Q40392	TMV resistance protein N	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os08g16070.1	NB-ARC domain containing protein	Medtr8g021210.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.222799.1.S1_at	A	A1TS	POPTR_0005s03080	POPTR_0005s03080 (11)	scaffold_5:2007172-2008919(-) (11)	NA	O81635	Kinesin-4	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222800.1.S1_a_at	A	A1MS	POPTR_0005s03490	POPTR_0005s03490 (11)	scaffold_5:2345189-2345522(-) (11)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222801.1.S1_x_at	A	A1MS	POPTR_0005s03230	POPTR_0005s03230 (10)	scaffold_5:2125923-2126600(-) (10)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	NA	GO:0005515|protein binding	NA
PtpAffx.222805.1.S1_at	A	A1TS	POPTR_0004s13110	POPTR_0004s13110 (11)	scaffold_4:12611112-12611361(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222807.1.S1_at	A	A1TS	POPTR_0011s13440	POPTR_0011s13440 (11)	scaffold_11:16173773-16176338(-) (11)//scaffold_206:1026-1399(-) (10)	POPTR_0206s00210 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222809.1.S1_at	A	A1TS	POPTR_0018s08100	POPTR_0018s08100 (11)	scaffold_18:8879024-8879537(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222812.1.S1_s_at	A	A3TS	POPTR_0008s21900	POPTR_0010s02450 (11)//POPTR_0008s22590 (11)//POPTR_0008s21900 (11)	scaffold_10:2838389-2838545(-) (10)//scaffold_8:16231979-16232135(-) (11)//scaffold_8:17210766-17210919(+) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222813.1.S1_at	A	A1TS	POPTR_0002s23020	POPTR_0002s23020 (11)	scaffold_2:20344125-20344162(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222814.1.S1_at	A	A1TS	POPTR_0005s27020	POPTR_0005s27020 (11)	scaffold_5:24839795-24840349(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g090170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222817.1.S1_s_at	A	A1TS	POPTR_0231s00210	POPTR_0231s00210 (11)	scaffold_231:4989-5105(-) (11)	NA	B3H5Q1	Beta-glucosidase 11	AT3G18070.2	beta glucosidase 43 	LOC_Os09g31410.2	"Os9bglu29 - beta-glucosidase homologue, similar to Os4bglu12 exoglucanase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222823.1.S1_at	A	A2TS	POPTR_0004s08410	POPTR_0004s08410 (11)//POPTR_0004s12160 (11)	scaffold_4:6959336-6959808(+) (11)//scaffold_4:11075752-11076224(-) (11)	NA	Q96D46	60S ribosomal export protein NMD3	AT2G03820.1	nonsense-mediated mRNA decay NMD3 family protein 	LOC_Os10g42320.1	"nonsense-mediated mRNA decay protein 3, putative, expressed"	Medtr3g087050.1	NMD3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222833.1.S1_s_at	A	A5TS	POPTR_0017s13770	POPTR_0035s00410 (10)//POPTR_0117s00200 (10)//POPTR_0043s00260 (10)//POPTR_0017s14590 (10)//POPTR_0017s13770 (10)	scaffold_117:1042-1075(+) (10)//scaffold_117:22273-29917(+) (10)//scaffold_117:53675-53708(+) (10)//scaffold_17:13939878-13939911(+) (10)//scaffold_17:13968331-13968364(+) (10)//scaffold_17:14589994-14590027(-) (10)//scaffold_35:245263-245296(-) (10)//scaffold_43:99861-99894(+) (10)	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.222834.1.S1_at	A	A1TS	POPTR_0009s00890	POPTR_0009s00890 (11)	scaffold_9:1048854-1049245(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222835.1.S1_s_at	A	A1TS	POPTR_0009s00900	POPTR_0009s00900 (11)	scaffold_9:1050048-1050170(+) (11)	NA	Q91DM0	Genome polyprotein	AT1G37113.1	unknown protein; LOCATED IN: chloroplast; Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 14; Viruses - 6; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222836.1.S1_s_at	A	A1TS	POPTR_0005s15910	POPTR_0005s15910 (11)	scaffold_5:12579147-12579384(-) (11)	NA	P51075	Chalcone synthase	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	GO:0009058|biosynthetic process	GO:0008415|acyltransferase activity	NA
PtpAffx.222840.1.S1_at	A	A2TS	POPTR_0001s31880	POPTR_0001s31880 (11)//POPTR_0001s31890 (10)	scaffold_1:30257696-30258445(+) (11)//scaffold_1:30284676-30285433(+) (11)	NA	Q8RXN0	ABC transporter G family member 11	AT1G17840.1	white-brown complex homolog protein 11 	LOC_Os09g29660.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g120680.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.222841.1.S1_at	A	A1TS	POPTR_1429s00200	POPTR_1429s00200 (11)	scaffold_1429:42-522(+) (11)	NA	NA	NA	AT1G60600.2	UbiA prenyltransferase family protein 	LOC_Os03g09060.1	"prenyltransferase, putative, expressed"	Medtr4g120820.1	UbiA prenyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222847.1.S1_at	A	A3TS	POPTR_0014s03760	POPTR_0014s03760 (11)//POPTR_0014s03750 (10)//POPTR_0014s03770 (10)	scaffold_14:2986791-2986860(+) (10)//scaffold_14:3002942-3003046(+) (11)//scaffold_14:3009092-3009161(+) (10)	NA	O49859	Cytochrome P450 82A4	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr6g009230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.222847.1.S1_s_at	A	A3TS	POPTR_0014s03750	POPTR_0014s03750 (11)//POPTR_0014s03760 (11)//POPTR_0014s03770 (10)	scaffold_14:2986856-2987188(+) (11)//scaffold_14:3003042-3003374(+) (11)//scaffold_14:3009157-3009489(+) (10)	NA	O49859	Cytochrome P450 82A4	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr6g009230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.222848.1.S1_x_at	A	A2MS	POPTR_0008s00630	POPTR_0008s00630 (11)//POPTR_0008s00590 (10)	scaffold_8:249595-249758(-) (10)//scaffold_8:275322-275548(-) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g134250.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222849.1.S1_at	A	A1TS	POPTR_0012s12970	POPTR_0012s12970 (10)	scaffold_12:13308298-13309213(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222854.1.S1_at	A	A2MS	POPTR_0008s15540	POPTR_0008s15540 (11)//POPTR_0420s00200 (11)	scaffold_420:1023-1059(-) (11)//scaffold_8:10315575-10315611(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222854.1.S1_x_at	A	A2MS	POPTR_0008s15540	POPTR_0008s15540 (11)//POPTR_0420s00200 (11)	scaffold_420:1023-1173(-) (11)//scaffold_8:10315461-10315611(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222856.1.S1_at	A	A1TS	POPTR_0006s03190	POPTR_0006s03190 (9)	scaffold_6:2008774-2008928(-) (9)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.222856.1.S1_s_at	A	A1TS	POPTR_0006s03190	POPTR_0006s03190 (11)	scaffold_6:2008599-2008976(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.222858.1.S1_at	A	A1TS	POPTR_0005s19210	POPTR_0005s19210 (9)	scaffold_5:17866250-17866766(-) (10)	POPTR_0007s09870 (6)	Q9FJX6	Formin-like protein 6	AT5G67470.1	formin homolog 6 	LOC_Os10g20710.1	"formin-like protein 6 precursor, putative, expressed"	Medtr5g015760.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222860.1.S1_s_at	A	A6TS	POPTR_0011s10120	POPTR_0480s00200 (11)//POPTR_0011s10260 (11)//POPTR_0011s10300 (11)//POPTR_0011s10220 (11)//POPTR_0011s10120 (11)//POPTR_0011s10150 (11)	scaffold_11:12625126-12625267(+) (11)//scaffold_11:12645224-12646182(+) (11)//scaffold_11:12654786-12654927(+) (11)//scaffold_11:12671681-12671822(+) (11)//scaffold_11:12683582-12683723(+) (11)//scaffold_11:12718872-12719013(+) (11)//scaffold_11:12738176-12738317(+) (11)//scaffold_480:1152-1293(+) (11)	NA	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43774.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.222862.1.S1_at	A	A1TS	POPTR_0086s00230	POPTR_0086s00230 (10)	scaffold_86:31639-33040(+) (10)	POPTR_0086s00270 (6)	Q9LIG2	Receptor-like protein kinase At3g21340	AT4G29990.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44930.1	"receptor-like protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.222863.1.S1_s_at	A	A1MA	POPTR_0001s30550	POPTR_0001s30550 (11)	scaffold_1:29021858-29022370(+) (11)//scaffold_531:60-8867(+) (11)//scaffold_818:7865-8377(+) (11)	POPTR_0019s09930 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222865.1.S1_s_at	A	A1TS	POPTR_0008s00890	POPTR_0008s00890 (11)	scaffold_8:419140-419563(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222869.1.S1_s_at	A	A1TS	POPTR_0017s04980	POPTR_0017s04980 (11)	scaffold_17:3821669-3822112(-) (11)	NA	O22864	Protein NLP8	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222870.1.S1_s_at	A	A1TS	POPTR_0013s11240	POPTR_0013s11240 (11)	scaffold_13:11924623-11926409(-) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT1G22620.1	Phosphoinositide phosphatase family protein 	LOC_Os08g01750.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222875.1.S1_at	A	A1TS	POPTR_0001s09600	POPTR_0001s09600 (11)	scaffold_1:7309116-7310675(-) (11)	NA	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.222878.1.S1_at	A	A1TS	POPTR_0001s29550	POPTR_0001s29550 (11)	scaffold_1:28196317-28196393(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g136770.1	Pectinesterase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222883.1.S1_at	A	A1TA	POPTR_0004s15340	POPTR_0004s15340 (10)	scaffold_4:15988075-15988693(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222891.1.S1_at	A	A1TS	POPTR_0001s22770	POPTR_0001s22770 (11)	scaffold_1:21655591-21656276(+) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT1G77450.1	NAC domain containing protein 32 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr1g065520.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.222894.1.S1_s_at	A	A1TS	POPTR_0008s01720	POPTR_0008s01720 (11)	scaffold_8:829303-829768(+) (11)	POPTR_1212s00200 (7)	NA	NA	NA	NA	LOC_Os01g65510.1	"OsFBX31 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222895.1.S1_at	A	A1TS	POPTR_0008s01710	POPTR_0008s01710 (11)	scaffold_8:826127-826209(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222895.1.S1_s_at	A	A2TS	POPTR_0008s01710	POPTR_0162s00220 (11)//POPTR_0008s01710 (11)	scaffold_162:1071-9966(-) (11)//scaffold_8:825852-825983(-) (11)	POPTR_0162s00200 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222895.1.S1_x_at	A	A1TS	POPTR_0008s01710	POPTR_0008s01710 (11)	scaffold_8:826038-826333(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222897.1.S1_at	A	A1TS	POPTR_0008s01700	POPTR_0008s01700 (11)	scaffold_8:823914-823955(+) (11)//scaffold_8:849480-849521(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os11g05690.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222898.1.S1_at	A	A1TS	POPTR_0008s01690	POPTR_0008s01690 (9)	scaffold_8:820945-821085(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222898.1.S1_s_at	A	A1TS	POPTR_0008s01790	POPTR_0008s01790 (11)	scaffold_8:820920-821198(-) (11)//scaffold_8:846837-847111(-) (11)	POPTR_0008s01690 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2229.1.S1_at	A	A1TS	POPTR_0002s20880	POPTR_0002s20880 (11)	scaffold_2:17106868-17107317(-) (11)	NA	P46423	Glutathione S-transferase	AT1G02930.2	glutathione S-transferase 6 	LOC_Os01g70770.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2229.2.S1_at	A	A1TS	POPTR_0002s20880	POPTR_0002s20880 (11)	scaffold_2:17108116-17108157(-) (11)	NA	P46423	Glutathione S-transferase	AT1G02930.2	glutathione S-transferase 6 	LOC_Os01g70770.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222903.1.S1_s_at	A	A1TS	POPTR_0012s05490	POPTR_0012s05490 (11)	scaffold_12:5159997-5160294(-) (11)	NA	Q7ZXX2	Kinesin-like protein KIF19	AT1G18550.1	ATP binding microtubule motor family protein 	LOC_Os01g42070.1	"kinesin motor domain containing protein, putative, expressed"	Medtr8g115780.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.222905.1.S1_s_at	A	A6TS	POPTR_0011s06230	POPTR_0011s06540 (11)//POPTR_0011s06450 (11)//POPTR_0011s06590 (11)//POPTR_0011s06690 (11)//POPTR_0011s06270 (11)//POPTR_0011s06230 (11)	scaffold_11:6357855-6357999(-) (11)//scaffold_11:6463033-6463177(-) (11)//scaffold_11:6827266-6827410(-) (11)//scaffold_11:7010362-7010506(-) (11)//scaffold_11:7117973-7118117(-) (11)//scaffold_11:7292414-7292558(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.222911.1.S1_at	A	A1TS	POPTR_0001s37510	POPTR_0001s37510 (11)	scaffold_1:36491968-36492056(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222911.1.S1_s_at	A	A1TS	POPTR_0001s37510	POPTR_0001s37510 (11)	scaffold_1:36492062-36492178(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222913.1.S1_s_at	A	A2TS	POPTR_0019s02540	POPTR_0019s02540 (11)//POPTR_1172s00210 (9)	scaffold_1172:2182-2592(+) (11)//scaffold_19:2316050-2316460(-) (11)	NA	Q5NE24	Nodulation-signaling pathway 2 protein	AT4G08250.1	GRAS family transcription factor 	LOC_Os11g06180.1	"nodulation-signaling pathway 2 protein, putative"	Medtr4g142290.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222915.1.S1_at	A	A1TS	POPTR_0014s04040	POPTR_0014s04040 (10)	scaffold_14:3219702-3219886(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222916.1.S1_at	A	A3MS	POPTR_0003s04350	POPTR_0003s04350 (11)//POPTR_0003s04420 (10)//POPTR_0003s04390 (10)	scaffold_3:5069387-5069757(+) (11)//scaffold_3:5097014-5097384(+) (11)//scaffold_3:5122379-5122749(+) (11)	NA	O59797	Putative nucleosome assembly protein C364.06	AT2G19480.3	nucleosome assembly protein 1;2 	LOC_Os05g46230.1	"NAP domain containing protein, putative, expressed"	Medtr2g046220.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.222928.1.S1_at	A	A1TS	POPTR_0914s00200	POPTR_0914s00200 (9)	scaffold_914:2605-2637(-) (9)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.222929.1.S1_s_at	A	A1TS	POPTR_0012s13200	POPTR_0012s13200 (11)	scaffold_12:13461598-13462365(-) (11)	NA	NA	NA	AT5G52280.1	Myosin heavy chain-related protein 	LOC_Os10g36060.1	"protein transport protein-related, putative, expressed"	Medtr5g010660.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.222933.1.S1_at	A	A1MS	POPTR_0001s07540	POPTR_0001s07540 (11)	scaffold_1:5662635-5662899(-) (11)	POPTR_0001s03190 (6)	Q7X8C5	Wall-associated receptor kinase-like 2	AT1G16130.1	wall associated kinase-like 2 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.222935.1.S1_at	A	A1TS	POPTR_0001s07600	POPTR_0001s07600 (10)	scaffold_1:5744310-5744692(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g130170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.222936.1.S1_at	A	A1TS	POPTR_0011s05470	POPTR_0011s05470 (11)	scaffold_11:5424275-5424497(+) (11)	NA	NA	NA	AT3G57880.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr7g111440.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222936.1.S1_x_at	A	A1TS	POPTR_0011s05470	POPTR_0011s05470 (11)	scaffold_11:5424236-5424541(+) (11)	NA	NA	NA	AT3G57880.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr7g111440.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222938.1.S1_at	A	A1TS	POPTR_0293s00230	POPTR_0293s00230 (11)	scaffold_293:20009-20569(-) (11)	NA	Q9SYF5	GDSL esterase/lipase 3	AT1G53990.1	GDSL-motif lipase 3 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.222942.1.S1_at	A	A1TS	POPTR_0007s04740	POPTR_0007s04740 (11)	scaffold_7:2954282-2955340(-) (11)	NA	Q5N8X6	Beta-galactosidase 3	AT5G63810.1	beta-galactosidase 10 	LOC_Os01g65460.2	"beta-galactosidase precursor, putative, expressed"	Medtr3g142650.1	Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.222947.1.S1_at	A	A1MS	POPTR_0006s18370	POPTR_0006s18370 (10)	scaffold_6:16764669-16765012(+) (10)	NA	NA	NA	AT5G57460.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to 166 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). "	LOC_Os08g14620.1	expressed protein	Medtr8g128860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222949.1.S1_s_at	A	A1TS	POPTR_0018s14520	POPTR_0018s14520 (11)	scaffold_18:14697647-14698177(+) (11)	NA	Q8VYA3	Wall-associated receptor kinase-like 10	AT1G79680.1	WALL ASSOCIATED KINASE (WAK)-LIKE 10 	LOC_Os05g04460.1	OsWAK56 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222950.1.S1_at	A	A2MS	POPTR_0015s15090	POPTR_0015s15090 (10)//POPTR_0015s15040 (9)	scaffold_113:36416-36617(+) (9)//scaffold_15:14405242-14405443(+) (9)//scaffold_15:14458102-14458303(+) (10)//scaffold_15:14547146-14547347(+) (9)//scaffold_15:14587522-14587723(+) (9)	POPTR_0015s15200 (7)	Q5S2C4	Protein NAP1	AT2G35110.1	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222953.1.S1_at	A	A1TS	POPTR_0012s14700	POPTR_0012s14700 (11)	scaffold_12:14490656-14491076(-) (11)	NA	O50401	Trehalose-phosphate phosphatase	AT5G51460.2	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g40550.2	"CPuORF23 - conserved peptide uORF-containing transcript, expressed"	Medtr3g009920.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.222955.1.S1_at	A	A1TS	POPTR_0010s21290	POPTR_0010s21290 (11)	scaffold_10:18632003-18632883(-) (11)	NA	NA	NA	AT3G04020.1	unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g16870.2	expressed protein	Medtr7g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222956.1.S1_at	A	A1TS	POPTR_0011s05290	POPTR_0011s05290 (10)	scaffold_11:5171358-5171392(+) (10)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT4G04960.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr2g017340.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222957.1.S1_at	A	A1TS	POPTR_0011s05300	POPTR_0011s05300 (11)	scaffold_11:5180005-5180039(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT4G04960.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr2g017340.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22296.1.S1_at	A	A1TS	POPTR_0006s28310	POPTR_0006s28310 (11)	scaffold_6:26030907-26031414(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT2G24820.1	translocon at the inner envelope membrane of chloroplasts 55-II 	LOC_Os02g54980.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr3g138540.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.222962.1.S1_at	A	A1TS	POPTR_0035s00290	POPTR_0035s00290 (11)	scaffold_35:146711-148599(-) (11)	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.1	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.2	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077240.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222964.1.S1_at	A	A1TS	POPTR_0001s41330	POPTR_0001s41330 (11)	scaffold_1:40946846-40947633(-) (11)	NA	NA	NA	AT4G27460.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os10g35630.1	"cystathionin beta synthase protein, putative, expressed"	Medtr2g014790.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222964.1.S1_x_at	A	A1TS	POPTR_0001s41330	POPTR_0001s41330 (11)	scaffold_1:40946846-40947633(-) (11)	POPTR_0011s12260 (6)	NA	NA	AT4G27460.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os10g35630.1	"cystathionin beta synthase protein, putative, expressed"	Medtr2g014790.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222966.1.S1_x_at	A	A1TS	POPTR_0008s22830	POPTR_0008s22830 (11)	scaffold_8:17612708-17613175(-) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G18590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os12g35350.2	"kelch repeat protein, putative, expressed"	Medtr8g139440.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222969.1.S1_at	A	A1TS	POPTR_0008s22920	POPTR_0008s22920 (11)	scaffold_8:17991960-17992887(+) (11)	NA	Q8LEB6	Probable receptor-like protein kinase At5g18500	AT5G18500.2	Protein kinase superfamily protein 	LOC_Os01g21960.1	"serine/threonine-protein kinase, putative, expressed"	Medtr8g134140.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222970.1.S1_at	A	A1TS	POPTR_0008s22960	POPTR_0008s22960 (11)	scaffold_8:18100022-18100398(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222971.1.S1_at	A	A1TS	POPTR_0008s22970	POPTR_0008s22970 (11)	scaffold_8:18101607-18102490(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222972.1.S1_at	A	A1TS	POPTR_0008s22980	POPTR_0008s22980 (11)	scaffold_8:18121912-18122373(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222976.1.S1_at	A	A1TS	POPTR_0008s23040	POPTR_0008s23040 (11)	scaffold_8:18247992-18249825(-) (11)	NA	NA	NA	AT4G19040.1	ENHANCED DISEASE RESISTANCE 2 	LOC_Os10g31770.1	"START domain containing protein, expressed"	Medtr5g027400.2	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222980.1.S1_at	A	A1TS	POPTR_0008s23130	POPTR_0008s23130 (11)	scaffold_8:18399293-18400047(+) (11)	NA	P17642	Pathogenesis-related protein STH-2	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.222981.1.S1_at	A	A1TS	POPTR_0008s23140	POPTR_0008s23140 (11)	scaffold_8:18405639-18406231(+) (11)	NA	Q9S7F4	Putative pentatricopeptide repeat-containing protein At2g01510	AT1G23450.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g49185.1	conserved hypothetical protein	Medtr7g121000.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222982.1.S1_at	A	A1TS	POPTR_0008s23150	POPTR_0008s23150 (11)	scaffold_8:18408466-18409179(+) (11)	NA	Q94AJ5	Probable polygalacturonase At1g80170	AT1G23460.1	Pectin lyase-like superfamily protein 	LOC_Os02g03750.1	"polygalacturonase, putative, expressed"	Medtr1g106120.1	"Ribosome-binding factor A; Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.222983.1.S1_at	A	A1TS	POPTR_0008s23160	POPTR_0008s23160 (11)	scaffold_8:18419215-18419375(+) (11)	NA	Q9SSD1	Protein TOO MANY MOUTHS	AT2G42800.1	receptor like protein 29 	LOC_Os05g45430.1	"TOO MANY MOUTHS precursor, putative, expressed"	Medtr2g024410.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.222984.1.S1_s_at	A	A1TS	POPTR_0008s23170	POPTR_0008s23170 (9)	scaffold_8:18429189-18429370(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222985.1.S1_at	A	A1TS	POPTR_0008s23200	POPTR_0008s23200 (11)	scaffold_8:18511328-18512260(+) (11)	NA	Q9LRZ3	Pumilio homolog 24	AT3G16810.1	pumilio 24 	LOC_Os03g61560.1	expressed protein	Medtr1g120450.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.222987.1.S1_at	A	A1TS	POPTR_0008s23280	POPTR_0008s23280 (11)	scaffold_8:18697526-18698002(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222988.1.S1_s_at	A	A4TS	POPTR_0002s22940	POPTR_0002s22940 (11)//POPTR_0008s23290 (11)//POPTR_0008s23310 (11)//POPTR_0059s00200 (9)	scaffold_2:20180575-20180754(-) (11)//scaffold_59:9133-9312(+) (9)//scaffold_8:18753199-18753378(-) (11)//scaffold_8:18783535-18783714(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222989.1.S1_at	A	A1TS	POPTR_0059s00210	POPTR_0059s00210 (11)	scaffold_59:26925-27784(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222991.1.S1_at	A	A1TS	POPTR_0002s22990	POPTR_0002s22990 (11)	scaffold_2:20256550-20258046(+) (11)	NA	Q6IBW4	Condensin-2 complex subunit H2	AT3G16730.1	"CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). "	LOC_Os07g33360.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222991.1.S1_s_at	A	A1TS	POPTR_0002s22990	POPTR_0002s22990 (11)	scaffold_2:20257372-20257874(+) (11)//scaffold_936:196-698(+) (9)	NA	Q6IBW4	Condensin-2 complex subunit H2	AT3G16730.1	"CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). "	LOC_Os07g33360.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222992.1.S1_at	A	A1TS	POPTR_0008s22510	POPTR_0008s22510 (10)	scaffold_8:17055245-17056142(+) (10)	NA	O65351	Subtilisin-like protease	AT3G14067.1	Subtilase family protein 	LOC_Os02g53860.1	"OsSub22 - Putative Subtilisin homologue, expressed"	Medtr8g025260.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222993.1.S1_at	A	A1TS	POPTR_0008s22510	POPTR_0008s22510 (9)	scaffold_8:17054089-17054722(+) (11)	NA	O65351	Subtilisin-like protease	AT3G14067.1	Subtilase family protein 	LOC_Os02g53860.1	"OsSub22 - Putative Subtilisin homologue, expressed"	Medtr8g025260.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222995.1.S1_at	A	A1MS	POPTR_0008s22480	POPTR_0008s22480 (11)	scaffold_8:17011759-17013219(+) (11)	NA	P11182	"Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial"	AT3G06850.2	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os01g21160.2	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.222995.1.S1_x_at	A	A1MS	POPTR_0008s22480	POPTR_0008s22480 (11)	scaffold_8:17011759-17013219(+) (11)	NA	P11182	"Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial"	AT3G06850.2	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os01g21160.2	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.222997.1.S1_at	A	A1MS	POPTR_0008s22445	POPTR_0008s22445 (11)	scaffold_8:16947790-16947980(+) (11)	NA	Q36284	NADH-ubiquinone oxidoreductase chain 5 (Fragment)	ATMG00665.1	NADH dehydrogenase 5B 	NA	NA	Medtr1g006950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22300.1.S1_at	A	A1TS	POPTR_0006s15820	POPTR_0006s15820 (9)	scaffold_6:13459025-13459522(-) (9)	NA	Q9M1S8	Probable glutamate carboxypeptidase 2	AT5G19740.1	Peptidase M28 family protein 	LOC_Os01g54010.1	"peptidase, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.223000.1.S1_at	A	A1TS	POPTR_0008s22360	POPTR_0008s22360 (11)	scaffold_8:16770973-16772041(+) (11)	NA	NA	NA	AT3G06880.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g30010.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g112060.1	U box; Armadillo-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223002.1.S1_at	A	A1TS	POPTR_0056s00270	POPTR_0056s00270 (9)	scaffold_18:13949998-13951481(-) (9)//scaffold_56:110514-112011(+) (9)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.4	"ATPase, E1-E2 type "	GO:0044281|small molecule metabolic process||GO:0006812|cation transport||GO:0006754|ATP biosynthetic process	"GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.223004.1.S1_at	A	A2TS	POPTR_0016s02750	POPTR_0016s02750 (10)//POPTR_0016s02710 (9)	scaffold_16:1321561-1330428(+) (9)//scaffold_16:1343809-1361068(+) (11)//scaffold_16:1352432-1361152(+) (9)	POPTR_0016s02730 (8)//POPTR_1436s00200 (8)//POPTR_0016s02680 (8)	P03010	Putative AC9 transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os04g03000.1	"transposon protein, putative, unclassified"	Medtr8g015840.1	"Zinc finger, BED-type predicted "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223006.1.S1_s_at	A	A2TS	POPTR_0067s00200	POPTR_0067s00230 (11)//POPTR_0067s00200 (11)	scaffold_16:567796-567836(+) (11)//scaffold_67:6593-6633(-) (11)//scaffold_67:33042-33082(-) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223006.1.S1_x_at	A	A1TS	POPTR_0067s00200	POPTR_0067s00200 (11)	scaffold_67:6131-6633(-) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223007.1.S1_at	A	A1MS	POPTR_0013s04720	POPTR_0013s04720 (11)	scaffold_13:3255736-3255829(-) (11)	POPTR_0019s04040 (6)	NA	NA	AT5G37360.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g57030.1	expressed protein	Medtr1g093310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223007.1.S1_x_at	A	A1MS	POPTR_0013s04720	POPTR_0013s04720 (10)	scaffold_13:3255736-3255851(-) (10)	POPTR_0019s04040 (6)	NA	NA	AT5G37360.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g57030.1	expressed protein	Medtr1g093310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223008.1.S1_at	A	A1TS	POPTR_0013s04740	POPTR_0013s04740 (9)	scaffold_13:3266429-3267001(-) (11)	NA	O64793	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520	AT5G18470.1	Curculin-like (mannose-binding) lectin family protein 	LOC_Os01g66640.1	"S-domain receptor-like protein kinase, putative"	Medtr8g053090.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223015.1.S1_x_at	A	A1TS	POPTR_0031s00430	POPTR_0031s00430 (9)	scaffold_31:261265-261483(+) (9)//scaffold_31:308850-309068(+) (9)//scaffold_31:359419-359637(+) (9)	NA	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.223016.1.S1_at	A	A1TS	POPTR_0031s00355	POPTR_0031s00355 (11)	scaffold_31:185946-188880(+) (11)	NA	NA	NA	AT5G08450.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). 	LOC_Os07g29450.1	expressed protein	Medtr6g070970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223025.1.S1_s_at	A	A1TS	POPTR_0017s12820	POPTR_0017s12820 (11)	scaffold_17:13005985-13006569(-) (11)	NA	Q6KCD5	Nipped-B-like protein	AT5G15540.1	PHD finger family protein 	LOC_Os07g01940.1	"sister chromatid cohesion 2, putative, expressed"	AC231342_23.1	"Zinc finger, FYVE/PHD-type AC231342.3 105368-115322 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223038.1.S1_at	A	A1MS	POPTR_0006s26790	POPTR_0006s26790 (11)	scaffold_6:24883940-24884023(+) (11)	NA	NA	NA	AT5G11270.1	overexpressor of cationic peroxidase 3 	LOC_Os06g39906.1	"homeobox domain containing protein, expressed"	Medtr3g136710.1	Calcium-binding EF-hand; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223039.1.S1_at	A	A1TS	POPTR_0031s00210	POPTR_0031s00210 (11)	scaffold_31:19616-19824(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003677|DNA binding	NA
PtpAffx.223039.1.S1_x_at	A	A1TS	POPTR_0031s00210	POPTR_0031s00210 (11)	scaffold_31:19616-19938(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003677|DNA binding	NA
PtpAffx.223040.1.S1_at	A	A1TS	POPTR_0031s00200	POPTR_0031s00200 (10)	scaffold_31:14436-14922(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223040.1.S1_x_at	A	A1TS	POPTR_0031s00200	POPTR_0031s00200 (9)	scaffold_31:14436-14922(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223047.1.S1_x_at	A	A1TS	POPTR_0003s04570	POPTR_0003s04570 (11)	scaffold_1:19585580-19585792(+) (10)//scaffold_13:6589780-6589992(-) (10)//scaffold_3:5287724-5287936(+) (11)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22305.1.S1_at	A	A1TS	POPTR_0016s14510	POPTR_0016s14510 (11)	scaffold_16:13712842-13713353(+) (11)	NA	Q15560	Transcription elongation factor A protein 2	AT2G38560.1	transcript elongation factor IIS 	LOC_Os03g60130.2	"transcription elongation factor protein, putative, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.223050.1.S1_s_at	A	A3TS	POPTR_0013s04970	POPTR_0013s04980 (11)//POPTR_0016s12150 (11)//POPTR_0013s04970 (11)	scaffold_13:3504637-3504854(+) (11)//scaffold_13:3518819-3519036(+) (11)//scaffold_16:11464391-11464608(+) (11)	NA	P54768	Tyrosine/DOPA decarboxylase 1	AT2G20340.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os10g26110.1	"decarboxylase, putative, expressed"	Medtr7g117140.1	Pyridoxal-dependent decarboxylase; ; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.223051.1.S1_s_at	A	A3TS	POPTR_0013s04980	POPTR_0013s04980 (11)//POPTR_0016s12150 (10)//POPTR_0013s04970 (10)	scaffold_13:3505062-3505984(+) (10)//scaffold_13:3519244-3520185(+) (11)//scaffold_16:11464816-11465757(+) (10)	NA	P54769	Tyrosine/DOPA decarboxylase 2	AT2G20340.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os10g26110.1	"decarboxylase, putative, expressed"	Medtr7g117100.1	Pyridoxal-dependent decarboxylase; ; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.223053.1.S1_s_at	A	A1TS	POPTR_0001s36280	POPTR_0001s36280 (11)	scaffold_1:34832785-34833194(+) (11)	NA	Q9LMA1	Probable flavin-containing monooxygenase 1	AT1G19250.1	flavin-dependent monooxygenase 1 	LOC_Os03g08410.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr8g132980.1	"Amine oxidase; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223056.1.S1_at	A	A1MS	POPTR_0006s14430	POPTR_0006s14430 (11)	scaffold_6:11790817-11790871(+) (11)	NA	NA	NA	AT2G06010.1	OBP3-responsive gene 4 	LOC_Os04g36850.1	"ORG4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223058.1.S1_at	A	A1TS	POPTR_0011s15770	POPTR_0011s15770 (11)	scaffold_11:17842784-17843163(-) (11)	NA	O04931	Alpha-glucosidase	AT5G11720.1	Glycosyl hydrolases family 31  protein 	LOC_Os06g46284.2	"glycosyl hydrolase, family 31, putative, expressed"	AC229699_3.1	"Glycoside hydrolase, family 31 AC229699.6 7237-9277 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223058.1.S1_s_at	A	A2TS	POPTR_0011s15750	POPTR_0011s15770 (11)//POPTR_0011s15750 (11)	scaffold_11:17834413-17834674(-) (11)//scaffold_11:17842794-17843061(-) (11)	NA	O04893	Alpha-glucosidase	AT5G11720.1	Glycosyl hydrolases family 31  protein 	LOC_Os06g46284.2	"glycosyl hydrolase, family 31, putative, expressed"	AC229699_4.1	"Glycoside hydrolase, family 31 AC229699.6 9352-14882 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.22306.2.A1_a_at	A	A1TS	POPTR_0001s15230	POPTR_0001s15230 (11)	scaffold_1:12068284-12069796(-) (11)	NA	P82413	"50S ribosomal protein L19, chloroplastic"	AT4G17560.1	Ribosomal protein L19 family protein 	LOC_Os02g43600.1	"50S ribosomal protein L19, chloroplast precursor, putative, expressed"	Medtr5g013420.1	Ribosomal protein L19 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.223060.1.S1_at	A	A1TS	POPTR_0001s28365	POPTR_0001s28365 (11)	scaffold_1:27188223-27188503(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g102750.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.223061.1.S1_at	A	A1TS	POPTR_0856s00210	POPTR_0856s00210 (11)	scaffold_856:10426-10568(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223061.1.S1_s_at	A	A1TS	POPTR_0856s00210	POPTR_0856s00210 (11)	scaffold_856:9938-10263(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223064.1.S1_x_at	A	A2TS	POPTR_0046s00290	POPTR_0046s00290 (11)//POPTR_0046s00235 (9)	scaffold_46:42155-42363(-) (9)//scaffold_46:96348-96822(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os12g12120.1	"verticillium wilt disease resistance protein precursor, putative, expressed"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.223066.1.S1_at	A	A1MS	POPTR_0012s09390	POPTR_0012s09390 (10)	scaffold_12:10430880-10431638(+) (10)	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT3G48430.1	relative of early flowering 6 	LOC_Os12g18150.1	"ZOS12-04 - C2H2 zinc finger protein, expressed"	AC235753_2.1	"Transcription factor jumonji, jmjC; Zinc finger, C2H2-type; ; AC235753.1 4557-10832 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.223067.1.S1_s_at	A	A2TS	POPTR_0004s05340	POPTR_0004s05340 (11)//POPTR_0017s00780 (10)	scaffold_17:564117-564501(-) (11)//scaffold_4:4078840-4079222(+) (11)	NA	P17783	"Malate dehydrogenase, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.223067.1.S1_x_at	A	A1MS	POPTR_0017s00780	POPTR_0017s00780 (9)	scaffold_17:564055-564515(-) (11)	NA	P83373	"Malate dehydrogenase, mitochondrial"	AT3G15020.1	Lactate/malate dehydrogenase family protein 	LOC_Os05g49880.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.223069.1.S1_at	A	A1TS	POPTR_0017s09200	POPTR_0017s09200 (10)	scaffold_17:7846087-7846647(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223072.1.S1_at	A	A1TS	POPTR_0009s10690	POPTR_0009s10690 (11)	scaffold_9:9130628-9131825(+) (11)	NA	NA	NA	AT3G48700.1	carboxyesterase 13 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129340.1	"CXE carboxylesterase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223072.1.S1_x_at	A	A1TS	POPTR_0009s10690	POPTR_0009s10690 (11)	scaffold_9:9130628-9131825(+) (11)	NA	NA	NA	AT3G48700.1	carboxyesterase 13 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129340.1	"CXE carboxylesterase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223073.1.S1_at	A	A1TS	POPTR_0009s10670	POPTR_0009s10670 (11)	scaffold_9:9128315-9128564(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223077.1.S1_at	A	A1MS	POPTR_0014s16730	POPTR_0014s16730 (11)	scaffold_14:12821767-12822354(-) (11)//scaffold_14:12837226-12837813(-) (11)	POPTR_0014s16750 (6)	Q9SJD4	Long chain acyl-CoA synthetase 8	AT2G04350.2	AMP-dependent synthetase and ligase family protein 	LOC_Os05g25310.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g106650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.223080.1.S1_at	A	A1TS	POPTR_0024s00460	POPTR_0024s00460 (11)	scaffold_24:209390-209685(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223082.1.S1_at	A	A1TS	POPTR_0436s00210	POPTR_0436s00210 (11)	scaffold_436:3592-4214(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223085.1.S1_s_at	A	A2TS	POPTR_0008s19130	POPTR_0008s19130 (11)//POPTR_0307s00210 (11)	scaffold_307:5576-6892(-) (11)//scaffold_8:13111276-13112756(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G26590.1	MATE efflux family protein 	LOC_Os08g43654.1	"MATE efflux family protein, putative, expressed"	Medtr5g034470.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.223086.1.S1_at	A	A1TS	POPTR_0002s02760	POPTR_0002s02760 (11)	scaffold_2:1675959-1676168(-) (11)	POPTR_0002s02710 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223088.1.S1_at	A	A1MS	POPTR_0004s13620	POPTR_0004s13620 (11)	scaffold_4:13979271-13979406(-) (11)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr4g142890.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.223089.1.S1_at	A	A1TS	POPTR_0797s00210	POPTR_0797s00210 (11)	scaffold_797:4074-4727(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223090.1.S1_x_at	A	A1TS	POPTR_0017s00660	POPTR_0017s00660 (11)	scaffold_17:382074-382236(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223093.1.S1_at	A	A1TS	POPTR_0017s00301	POPTR_0017s00301 (11)	scaffold_17:75538-75780(-) (11)	POPTR_0017s00650 (7)	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223094.1.S1_s_at	A	A4TS	POPTR_0017s00270	POPTR_0017s00301 (11)//POPTR_0017s00270 (11)//POPTR_0017s00650 (11)//POPTR_0017s00660 (11)	scaffold_17:58792-59121(-) (11)//scaffold_17:76159-76488(-) (11)//scaffold_17:377547-377876(+) (11)//scaffold_17:381321-381650(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223096.1.S1_at	A	A1TS	POPTR_0016s03920	POPTR_0016s03920 (9)	scaffold_16:2188188-2188220(+) (9)//scaffold_16:2218045-2218077(+) (9)//scaffold_1686:3841-3873(-) (9)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38380.1	plant protein of unknown function domain containing protein	Medtr7g067490.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223098.1.S1_at	A	A1TS	POPTR_0014s00955	POPTR_0014s00955 (11)	scaffold_14:897535-897583(-) (11)	NA	NA	NA	AT5G23400.1	Leucine-rich repeat (LRR) family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223099.1.S1_at	A	A1TS	POPTR_0014s03300	POPTR_0014s03300 (11)	scaffold_14:2640728-2648851(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223106.1.S1_at	A	A1TS	POPTR_0003s05340	POPTR_0003s05340 (9)	scaffold_109:16478-16678(-) (11)//scaffold_3:6603438-6603631(+) (9)	NA	NA	NA	AT1G79910.2	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os02g06430.1	"DUF292 domain containing protein, expressed"	Medtr4g158790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223109.1.S1_at	A	A1TS	POPTR_0015s06990	POPTR_0015s06990 (11)	scaffold_15:8052970-8053230(-) (11)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223109.1.S1_s_at	A	A1TS	POPTR_0015s06990	POPTR_0015s06990 (11)	scaffold_15:8053225-8053522(-) (11)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22311.2.S1_a_at	A	A1TS	POPTR_0003s07720	POPTR_0003s07720 (11)	scaffold_3:9235017-9235556(-) (11)	NA	Q869R9	Myb-like protein J	AT5G47390.1	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.223110.1.S1_at	A	A1TS	POPTR_0015s06980	POPTR_0015s06980 (11)	scaffold_15:8032674-8033058(+) (11)	NA	Q9FME3	Transcription factor TCP5	AT5G60970.1	"TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 "	LOC_Os01g55750.3	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223111.1.S1_at	A	A1TS	POPTR_0015s06970	POPTR_0015s06970 (11)	scaffold_15:7973444-7975083(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G60980.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os04g30430.1	"nuclear transport factor 2, putative, expressed"	Medtr7g062040.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.223112.1.S1_at	A	A1TS	POPTR_0015s06910	POPTR_0015s06910 (11)	scaffold_15:7940194-7940766(+) (11)	NA	O54922	Exocyst complex component 7	AT5G61010.2	exocyst subunit exo70 family protein E2 	LOC_Os01g55799.3	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr3g036640.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.223113.1.S1_at	A	A1TS	POPTR_0015s06890	POPTR_0015s06890 (11)	scaffold_15:7921510-7921713(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223114.1.S1_at	A	A1TS	POPTR_0015s06790	POPTR_0015s06790 (11)	scaffold_15:7833277-7834063(+) (11)	NA	NA	NA	AT1G74220.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03630.1); Has 383 Blast hits to 347 proteins in 86 species: Archae - 0; Bacteria - 17; Metazoa - 87; Fungi - 65; Plants - 76; Viruses - 2; Other Eukaryotes - 136 (source: NCBI BLink). "	LOC_Os07g20270.1	expressed protein	Medtr3g036580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223115.1.S1_at	A	A1TS	POPTR_0015s06750	POPTR_0015s06750 (10)	scaffold_15:7761384-7761750(-) (10)	NA	Q5EAE9	RING-H2 finger protein ATL43	AT5G05810.1	RING/U-box superfamily protein 	LOC_Os06g48065.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g149320.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223117.1.S1_at	A	A1TS	POPTR_0015s06740	POPTR_0015s06740 (11)	scaffold_15:7743269-7743821(+) (11)	NA	Q8N3C0	Activating signal cointegrator 1 complex subunit 3	AT5G61140.2	U5 small nuclear ribonucleoprotein helicase 	LOC_Os03g11470.1	"DEAD/DEAH box helicase domain containing protein, expressed"	Medtr3g037000.1	Sec63; ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.223118.1.S1_at	A	A1TS	POPTR_0015s06710	POPTR_0015s06710 (11)	scaffold_15:7710682-7711228(+) (11)	NA	NA	NA	AT5G61140.2	U5 small nuclear ribonucleoprotein helicase 	NA	NA	Medtr3g037000.1	Sec63; ATP-requiring DNA helicase RecQ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223119.1.S1_at	A	A1TS	POPTR_0015s06700	POPTR_0015s06700 (11)	scaffold_15:7683433-7684789(-) (11)	NA	NA	NA	AT5G07980.1	dentin sialophosphoprotein-related 	LOC_Os03g11460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223120.1.S1_at	A	A1TS	POPTR_0015s06670	POPTR_0015s06670 (11)	scaffold_15:7635837-7637514(-) (11)	NA	NA	NA	AT5G07980.1	dentin sialophosphoprotein-related 	LOC_Os03g11460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223121.1.S1_at	A	A1TS	POPTR_0015s06650	POPTR_0015s06650 (11)	scaffold_15:7612236-7612710(-) (11)	NA	Q8ZKF6	Acetyl-coenzyme A synthetase	AT5G23050.1	acyl-activating enzyme 17 	LOC_Os09g21230.1	"AMP-binding enzyme, putative, expressed"	Medtr4g134030.1	"AMP-dependent synthetase and ligase; Legume lectin, alpha "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.223123.1.S1_s_at	A	A1TS	POPTR_0015s06630	POPTR_0015s06630 (11)	scaffold_15:7568388-7569493(+) (11)	NA	NA	NA	AT1G18520.1	tetraspanin11 	LOC_Os08g34460.1	"tetraspanin family protein, putative, expressed"	Medtr8g115550.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.223124.1.S1_at	A	A1TS	POPTR_0015s06610	POPTR_0015s06610 (11)	scaffold_15:7556257-7557058(+) (11)	NA	NA	NA	AT1G18520.1	tetraspanin11 	LOC_Os09g25760.1	"tetraspanin family protein, putative, expressed"	Medtr8g115550.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.223127.1.S1_at	A	A1TS	POPTR_0015s06470	POPTR_0015s06470 (11)	scaffold_15:7280545-7281078(+) (11)	NA	Q9CA27	Ethylene-responsive transcription factor ERF118	AT1G68550.2	Integrase-type DNA-binding superfamily protein 	LOC_Os09g13940.2	"AP2 domain containing protein, expressed"	Medtr5g066580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.223134.1.S1_at	A	A1TS	POPTR_1877s00200	POPTR_1877s00200 (11)	scaffold_15:7033373-7033576(+) (11)//scaffold_1877:950-1153(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223135.1.S1_at	A	A1TS	POPTR_0015s06340	POPTR_0015s06340 (11)	scaffold_15:7002410-7002719(-) (11)	NA	Q9LS46	Aluminum-activated malate transporter 9	AT3G18440.1	aluminum-activated malate transporter 9 	LOC_Os02g49790.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223136.1.S1_at	A	A1TS	POPTR_0015s06330	POPTR_0015s06330 (11)	scaffold_15:6997695-6997897(+) (11)	NA	Q0IU52	Aspartic proteinase Asp1	AT1G49050.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g49800.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr4g143400.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223137.1.S1_at	A	A1MS	POPTR_0015s06280	POPTR_0015s06280 (10)	scaffold_15:6778772-6779754(-) (10)	NA	Q9SX33	Putative phospholipid-transporting ATPase 9	AT1G68710.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g29380.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr8g115700.1	Haloacid dehalogenase-like hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223138.1.S1_at	A	A1TS	POPTR_0015s06270	POPTR_0015s06270 (11)	scaffold_15:6776607-6777081(+) (11)	NA	Q9FZ75	Probable calcium-binding protein CML15	AT1G18530.1	EF hand calcium-binding protein family 	LOC_Os05g50180.1	"OsCML14 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g115680.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223141.1.S1_at	A	A1TS	POPTR_0015s06240	POPTR_0015s06240 (11)	scaffold_15:6614002-6614250(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223142.1.S1_at	A	A1TS	POPTR_0018s14500	POPTR_0018s14500 (11)	scaffold_18:14684179-14684331(-) (11)	POPTR_0126s00200 (6)	Q9C9L5	Wall-associated receptor kinase-like 9	AT1G69730.1	Wall-associated kinase family protein 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	AC147501_3.1	Tyrosine protein kinase AC147501.9 8841-5950 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223144.1.S1_at	A	A1TS	POPTR_0007s01620	POPTR_0007s01620 (11)	scaffold_7:930938-931467(+) (11)	POPTR_0007s01630 (6)	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223147.1.S1_s_at	A	A1TS	POPTR_0001s01670	POPTR_0001s01670 (11)	scaffold_1:1242882-1242985(-) (11)//scaffold_1:2982627-2982730(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os07g40810.1	"NBS-LRR type disease resistance protein, putative"	Medtr5g028060.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223148.1.S1_s_at	A	A1TS	POPTR_0001s31870	POPTR_0001s31870 (11)	scaffold_1:30221520-30222475(+) (11)	NA	Q1DXH0	"Polyadenylate-binding protein, cytoplasmic and nuclear"	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.223149.1.S1_at	A	A1TS	POPTR_0005s04430	POPTR_0005s04430 (9)	scaffold_5:2975354-2975725(+) (9)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223149.1.S1_x_at	A	A1TS	POPTR_0005s04430	POPTR_0005s04430 (10)	scaffold_5:2975354-2975725(+) (10)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223152.1.S1_x_at	A	A1TS	POPTR_0019s08870	POPTR_0019s08870 (10)	scaffold_19:10443980-10444123(-) (10)	NA	Q149N8	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076790.1	"Helicase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223158.1.S1_at	A	A1TS	POPTR_0273s00220	POPTR_0273s00220 (11)	scaffold_273:19818-19995(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223160.1.S1_at	A	A1MS	POPTR_0007s08040	POPTR_0007s08040 (11)	scaffold_7:6541807-6542015(-) (11)	NA	NA	NA	AT1G79220.1	Mitochondrial transcription termination factor family protein 	LOC_Os02g51450.2	"mTERF family protein, expressed"	Medtr8g012590.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223163.1.S1_at	A	A1TS	POPTR_0004s09930	POPTR_0004s09930 (11)	scaffold_4:8461014-8461134(+) (11)	NA	NA	NA	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os10g35220.1	"KH domain containing protein, putative, expressed"	Medtr6g013130.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.223164.1.S1_at	A	A1TS	POPTR_0013s11440	POPTR_0013s11440 (11)	scaffold_13:12093007-12093464(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223165.1.S1_s_at	A	A2TS	POPTR_0013s11390	POPTR_0013s11390 (11)//POPTR_0013s11450 (10)	scaffold_13:12072424-12073910(-) (11)//scaffold_13:12098248-12099728(-) (10)	NA	Q8BGE5	Fanconi anemia group M protein homolog	AT1G35530.2	DEAD/DEAH box RNA helicase family protein  	LOC_Os11g07870.1	"DEAD/DEAH box helicase domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.223166.1.S1_at	A	A1TS	POPTR_0013s11480	POPTR_0013s11480 (11)	scaffold_13:12091627-12091989(-) (9)//scaffold_13:12106510-12106888(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223175.1.S1_at	A	A1TS	POPTR_0016s13010	POPTR_0016s13010 (11)	scaffold_16:12309891-12310187(-) (11)//scaffold_16:12345799-12346095(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223177.1.S1_s_at	A	A1TS	POPTR_0011s05820	POPTR_0011s05820 (11)	scaffold_11:5836925-5837633(-) (11)	POPTR_0011s05790 (6)	O80961	MLO-like protein 12	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr4g108950.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.223178.1.S1_at	A	A1TS	POPTR_0011s05820	POPTR_0011s05820 (11)	scaffold_11:5834117-5834348(-) (11)	POPTR_0011s05790 (6)	O80961	MLO-like protein 12	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr4g108950.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.22318.1.S1_at	A	A1TS	POPTR_0008s04060	POPTR_0008s04060 (11)	scaffold_8:2264138-2264228(-) (11)	NA	P12360	"Chlorophyll a-b binding protein 6A, chloroplastic"	AT3G54890.1	photosystem I light harvesting complex gene 1 	LOC_Os06g21590.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr4g012910.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.223181.1.S1_at	A	A1TS	POPTR_0010s17560	POPTR_0010s17560 (10)	scaffold_10:16102653-16103806(-) (11)	NA	Q8L7F9	"Beta-1,3-galactosyltransferase 15"	AT1G26810.1	galactosyltransferase1 	LOC_Os06g12390.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g044460.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.223189.1.S1_a_at	A	A1MS	POPTR_0013s00300	POPTR_0013s00300 (11)	scaffold_13:83854-84289(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g102990.1	"mucin 2, intestinal/tracheal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223189.1.S1_at	A	A1TS	POPTR_0013s00300	POPTR_0013s00300 (10)	scaffold_13:84251-84675(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g102990.1	"mucin 2, intestinal/tracheal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223189.1.S1_x_at	A	A1MS	POPTR_0013s00300	POPTR_0013s00300 (11)	scaffold_13:83857-84597(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g102990.1	"mucin 2, intestinal/tracheal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223190.1.S1_at	A	A2MS	POPTR_0019s01630	POPTR_0019s01630 (9)//POPTR_0879s00200 (9)	scaffold_19:1439133-1439689(-) (9)//scaffold_879:350-906(+) (9)	NA	Q39962	Citrate-binding protein	NA	NA	LOC_Os12g07310.1	"citrate-binding protein precursor, putative, expressed"	Medtr3g144330.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223191.1.S1_at	A	A1TS	POPTR_0013s02310	POPTR_0013s02310 (10)	scaffold_13:1368589-1375843(+) (10)	NA	Q06327	Lipoxygenase 1	AT1G55020.1	lipoxygenase 1 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr7g139190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.223192.1.S1_at	A	A1TS	POPTR_0001s05580	POPTR_0001s05580 (11)	scaffold_1:4314186-4314245(+) (11)//scaffold_3:18951580-18951629(-) (10)	NA	Q5YGP8	AP2-like ethylene-responsive transcription factor PLT1	AT3G20840.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g42570.1	"AP2/EREBP transcription factor BABY BOOM, putative, expressed"	Medtr4g087240.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.223193.1.S1_at	A	A1TS	POPTR_0365s00220	POPTR_0365s00220 (11)	scaffold_365:9775-14074(-) (11)	NA	NA	NA	AT3G51420.1	strictosidine synthase-like 4 	LOC_Os10g39710.1	"strictosidine synthase, putative, expressed"	Medtr8g088630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223194.1.S1_at	A	A1TS	POPTR_0016s02770	POPTR_0016s02770 (11)	scaffold_16:1372704-1373232(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os03g52310.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.223199.1.S1_s_at	A	A1TS	POPTR_0004s17910	POPTR_0004s17910 (10)	scaffold_4:17950424-17950457(-) (10)	NA	NA	NA	AT4G34950.1	Major facilitator superfamily protein 	LOC_Os09g36600.1	"nodulin, putative, expressed"	Medtr5g022310.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223201.1.S1_at	A	A1TS	POPTR_0001s33950	POPTR_0001s33950 (9)	scaffold_1:32116417-32116743(-) (9)	NA	Q9FKS0	"Uridine kinase-like protein 1, chloroplastic"	AT5G40870.1	uridine kinase/uracil phosphoribosyltransferase 1 	LOC_Os09g32820.1	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223201.1.S1_x_at	A	A1TS	POPTR_0001s33950	POPTR_0001s33950 (9)	scaffold_1:32116417-32116743(-) (9)	NA	Q9FKS0	"Uridine kinase-like protein 1, chloroplastic"	AT5G40870.1	uridine kinase/uracil phosphoribosyltransferase 1 	LOC_Os09g32820.1	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223202.1.S1_s_at	A	A1TS	POPTR_0001s04970	POPTR_0001s04970 (11)	scaffold_1:3817266-3818293(-) (11)	NA	Q9LXT9	Callose synthase 3	AT5G13000.1	glucan synthase-like 12 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.223207.1.S1_s_at	A	A2TS	POPTR_0017s07320	POPTR_0017s07320 (11)//POPTR_0017s07400 (10)	scaffold_17:5651095-5656039(+) (11)//scaffold_17:5673289-5673365(+) (11)//scaffold_17:5749260-5754247(+) (10)//scaffold_17:5754171-5754241(+) (9)//scaffold_17:5781787-5781863(+) (11)	POPTR_0017s07310 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223209.1.S1_s_at	A	A1TS	POPTR_0003s18850	POPTR_0003s18850 (11)	scaffold_3:17763854-17764101(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0043086|negative regulation of catalytic activity	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.223210.1.S1_s_at	A	A1TS	POPTR_0002s22490	POPTR_0002s22490 (11)	scaffold_2:19235266-19235800(+) (11)	NA	Q6FQA0	RNA exonuclease 4	AT3G27970.1	Exonuclease family protein 	LOC_Os02g47920.1	ZOS2-16 - C2H2 zinc finger protein	Medtr2g121500.1	"Zinc finger, C2H2-type; Polynucleotidyl transferase, Ribonuclease H fold "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.223221.1.S1_at	A	A1TS	POPTR_0223s00200	POPTR_0223s00200 (10)	scaffold_223:4532-5422(-) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.223221.1.S1_x_at	A	A1TS	POPTR_0223s00200	POPTR_0223s00200 (11)	scaffold_223:4575-5422(-) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.223222.1.S1_s_at	A	A1TS	POPTR_0009s15920	POPTR_0009s15920 (11)	scaffold_9:12224557-12224791(-) (11)	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT2G02970.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os08g33850.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g044090.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.223222.1.S1_x_at	A	A1TS	POPTR_0009s15920	POPTR_0009s15920 (11)	scaffold_9:12224566-12225081(-) (11)	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT2G02970.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os08g33850.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g044090.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.223223.1.S1_s_at	A	A1TS	POPTR_0018s13480	POPTR_0018s13480 (11)	scaffold_18:13798454-13798872(+) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0003676|nucleic acid binding||GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0008270|zinc ion binding	NA
PtpAffx.223224.1.S1_at	A	A1TS	POPTR_0018s13470	POPTR_0018s13470 (11)	scaffold_18:13791759-13792009(+) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os06g51170.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223229.1.S1_at	A	A1MS	POPTR_0290s00230	POPTR_0290s00230 (11)	scaffold_290:14468-14609(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g128320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223230.1.S1_x_at	A	A1TS	POPTR_0006s25200	POPTR_0006s25200 (11)	scaffold_290:6859-6894(-) (11)//scaffold_6:23624965-23625000(+) (11)	NA	Q54J73	Poly(A) polymerase	AT4G32850.6	nuclear poly(a) polymerase 	LOC_Os06g36360.4	expressed protein	Medtr3g128240.1	"DNA polymerase, beta-like region; Poly(A) polymerase, RNA-binding region; Poly(A) polymerase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.223231.1.S1_at	A	A1TS	POPTR_2671s00200	POPTR_2671s00200 (11)	scaffold_2671:1539-2099(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223232.1.S1_at	A	A1TS	POPTR_0010s06370	POPTR_0010s06370 (11)	scaffold_10:7744962-7745741(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223234.1.S1_at	A	A1TS	POPTR_0004s23010	POPTR_0004s23010 (11)	scaffold_4:21829126-21829432(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.223235.1.S1_at	A	A1TS	POPTR_0004s23060	POPTR_0004s23060 (11)	scaffold_4:21859300-21859843(-) (11)	NA	Q9FMY3	Serine/threonine-protein kinase-like protein At5g23170	AT5G23170.1	Protein kinase superfamily protein 	LOC_Os05g32170.1	"TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr3g148970.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223236.1.S1_at	A	A1TS	POPTR_0004s23070	POPTR_0004s23070 (11)	scaffold_4:21865289-21865844(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr8g139010.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223237.1.S1_at	A	A1TS	POPTR_0004s23080	POPTR_0004s23080 (11)	scaffold_4:21875580-21876026(+) (11)	NA	Q9C518	Transcription factor TCP8	AT1G58100.1	TCP family transcription factor  	LOC_Os12g07480.1	"TCP family transcription factor, putative, expressed"	Medtr2g006520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223238.1.S1_at	A	A1TS	POPTR_0004s23090	POPTR_0004s23090 (10)	scaffold_4:21882530-21883069(+) (11)	NA	NA	NA	AT5G41200.1	AGAMOUS-like 75 	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.223239.1.S1_at	A	A1TS	POPTR_0004s23100	POPTR_0004s23100 (11)	scaffold_4:21883804-21885778(-) (11)	NA	Q54PW9	Protein EI24 homolog	AT4G06676.1	CONTAINS InterPro DOMAIN/s: Etoposide-induced 2.4 (InterPro:IPR009890); Has 264 Blast hits to 262 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 16; Plants - 79; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). 	LOC_Os04g35380.1	expressed protein	Medtr2g005860.1	Etoposide-induced 2.4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223240.1.S1_at	A	A2TS	POPTR_0004s23120	POPTR_0004s23120 (10)//POPTR_0022s00810 (9)	scaffold_4:21898860-21899152(-) (10)	NA	A8ID74	Ribosome biogenesis protein BOP1 homolog	AT2G40360.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g25440.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g005810.1	"Calcium-binding EF-hand; WD40-like; BOP1, N-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0005634|nucleus
PtpAffx.223240.1.S1_s_at	A	A1TS	POPTR_0004s23120	POPTR_0004s23120 (11)	scaffold_4:21898031-21900336(-) (11)	POPTR_0022s00810 (8)	A8ID74	Ribosome biogenesis protein BOP1 homolog	AT2G40360.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g25440.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g005810.1	"Calcium-binding EF-hand; WD40-like; BOP1, N-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0005634|nucleus
PtpAffx.223241.1.S1_at	A	A1TS	POPTR_0004s23150	POPTR_0004s23150 (11)	scaffold_4:21917461-21917791(-) (11)	NA	NA	NA	AT1G58070.1	unknown protein; Has 286 Blast hits to 266 proteins in 81 species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi - 19; Plants - 78; Viruses - 4; Other Eukaryotes - 68 (source: NCBI BLink). 	LOC_Os11g09040.1	expressed protein	Medtr2g005670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223241.1.S1_s_at	A	A1TS	POPTR_0004s23150	POPTR_0004s23150 (11)	scaffold_4:21917204-21917655(-) (11)	NA	NA	NA	AT1G58070.1	unknown protein; Has 286 Blast hits to 266 proteins in 81 species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi - 19; Plants - 78; Viruses - 4; Other Eukaryotes - 68 (source: NCBI BLink). 	LOC_Os11g09040.1	expressed protein	Medtr2g005670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223242.1.S1_at	A	A1TS	POPTR_0004s23160	POPTR_0004s23160 (11)	scaffold_4:21931943-21935881(+) (11)	NA	A3KMI0	ATP-dependent RNA helicase DHX29	AT1G58060.1	RNA helicase family protein 	LOC_Os04g35260.1	"DEAD/DEAH box helicase domain containing protein, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.223245.1.S1_at	A	A1TS	POPTR_0004s23190	POPTR_0004s23190 (11)	scaffold_4:21971283-21971849(+) (11)	NA	NA	NA	AT4G24320.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os03g44430.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr4g069870.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223246.1.S1_at	A	A1TS	POPTR_0004s23230	POPTR_0004s23230 (11)	scaffold_4:22010426-22012024(+) (11)	NA	Q5TJG6	Bromodomain-containing protein 2	AT1G58025.3	DNA-binding bromodomain-containing protein 	LOC_Os06g24870.3	"bromodomain domain containing protein, expressed"	Medtr2g005590.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223247.1.S1_at	A	A1TS	POPTR_0004s23230	POPTR_0004s23230 (11)	scaffold_4:22017200-22018167(+) (11)	NA	Q5TJG6	Bromodomain-containing protein 2	AT1G58025.3	DNA-binding bromodomain-containing protein 	LOC_Os06g24870.3	"bromodomain domain containing protein, expressed"	Medtr2g005590.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223248.1.S1_at	A	A1TS	POPTR_0004s23240	POPTR_0004s23240 (11)	scaffold_4:22022121-22022792(+) (11)	NA	Q07442	Bromodomain-containing factor 2	AT1G58025.3	DNA-binding bromodomain-containing protein 	LOC_Os08g01794.2	"bromodomain domain containing protein, expressed"	Medtr2g005590.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223249.1.S1_s_at	A	A1TS	POPTR_0004s23250	POPTR_0004s23250 (11)	scaffold_4:22031949-22033074(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT1G09810.1	evolutionarily conserved C-terminal region 11 	LOC_Os01g48790.2	"YT521-B-like family domain containing protein, expressed"	Medtr2g005610.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223249.1.S1_x_at	A	A1TS	POPTR_0004s23250	POPTR_0004s23250 (11)	scaffold_4:22031174-22033146(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT1G09810.1	evolutionarily conserved C-terminal region 11 	LOC_Os01g48790.2	"YT521-B-like family domain containing protein, expressed"	Medtr2g005610.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22325.1.A1_at	A	A1TS	POPTR_0005s00340	POPTR_0005s00340 (11)	scaffold_5:95713-96170(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT1G09540.1	myb domain protein 61 	LOC_Os05g04820.1	"MYB family transcription factor, putative, expressed"	Medtr1g103340.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223250.1.S1_at	A	A1TS	POPTR_0004s23280	POPTR_0004s23280 (11)	scaffold_4:22068506-22068727(-) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT3G28740.1	Cytochrome P450 superfamily protein 	LOC_Os03g55260.1	"cytochrome P450, putative, expressed"	Medtr5g016390.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223251.1.S1_at	A	A1TS	POPTR_0004s23320	POPTR_0004s23320 (11)	scaffold_4:22093157-22093821(-) (11)	NA	NA	NA	AT5G49920.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os05g35260.1	"PB1 domain containing protein, expressed"	Medtr2g005490.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223252.1.S1_at	A	A1TS	POPTR_0004s23330	POPTR_0004s23330 (11)	scaffold_4:22101980-22102443(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g005500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223253.1.S1_at	A	A1TS	POPTR_0004s23340	POPTR_0004s23340 (11)	scaffold_4:22107423-22107870(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223254.1.S1_at	A	A1TS	POPTR_0004s23350	POPTR_0004s23350 (11)	scaffold_4:22110030-22110516(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223256.1.S1_at	A	A2TS	POPTR_0004s23380	POPTR_0004s23380 (11)//POPTR_0952s00200 (11)	scaffold_4:22127249-22127555(+) (11)//scaffold_952:7068-7375(-) (11)	NA	P0C8Z7	GDSL esterase/lipase At1g28640	AT1G28640.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os11g31940.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019090.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.223257.1.S1_at	A	A1TS	POPTR_0004s23390	POPTR_0004s23390 (11)	scaffold_4:22131042-22132107(-) (11)	NA	P52420	"Phosphoribosylamine--glycine ligase, chloroplastic"	AT1G09830.1	Glycinamide ribonucleotide (GAR) synthetase 	LOC_Os08g09210.2	"phosphoribosylamine--glycine ligase, putative, expressed"	Medtr5g025340.1	Phosphoribosylglycinamide synthetase; ; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009113|purine base biosynthetic process	GO:0004637|phosphoribosylamine-glycine ligase activity	NA
PtpAffx.223258.1.S1_at	A	A1TS	POPTR_0004s23400	POPTR_0004s23400 (11)	scaffold_4:22140294-22141739(-) (11)	NA	B1KXB5	Putative Holliday junction resolvase	AT1G12244.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os10g40650.1	"holliday junction resolvase, putative, expressed"	Medtr2g076890.1	Holliday junction resolvase YqgF 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity||GO:0000150|recombinase activity	NA
PtpAffx.223259.1.S1_at	A	A1TS	POPTR_0004s23450	POPTR_0004s23450 (11)	scaffold_4:22170050-22171094(-) (11)	NA	B0S733	Regulator of nonsense transcripts 3A	AT1G33980.1	Smg-4/UPF3 family protein 	LOC_Os04g35920.2	"nonsense-mediated decay UPF3, putative, expressed"	Medtr2g005430.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223260.1.S1_at	A	A1TS	POPTR_0004s23530	POPTR_0004s23530 (11)	scaffold_4:22225018-22225241(+) (11)	NA	Q8BMJ2	"Leucyl-tRNA synthetase, cytoplasmic"	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os09g32650.1	"leucyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr7g006010.1	"Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.223261.1.S1_s_at	A	A1TS	POPTR_0004s23550	POPTR_0004s23550 (11)	scaffold_4:22228494-22229297(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G09600.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223262.1.S1_at	A	A1TS	POPTR_0004s23550	POPTR_0004s23550 (11)	scaffold_4:22230095-22231032(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G09600.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223263.1.S1_at	A	A1MS	POPTR_0004s23550	POPTR_0004s23550 (11)	scaffold_4:22233514-22234283(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G09600.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223265.1.S1_at	A	A1TS	POPTR_0004s23600	POPTR_0004s23600 (11)	scaffold_4:22262062-22262553(-) (11)	NA	Q9SY66	Protein FAR1-RELATED SEQUENCE 11	AT1G10240.1	FAR1-related sequence 11 	LOC_Os04g36590.1	"transposon protein, putative, unclassified, expressed"	Medtr2g005160.1	"FAR1; Zinc finger, SWIM-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223266.1.S1_at	A	A1TS	POPTR_0004s23620	POPTR_0004s23620 (11)	scaffold_4:22267363-22267878(-) (11)	NA	Q9SY66	Protein FAR1-RELATED SEQUENCE 11	AT1G10240.1	FAR1-related sequence 11 	LOC_Os04g36590.1	"transposon protein, putative, unclassified, expressed"	Medtr2g005160.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.223267.1.S1_at	A	A1TS	POPTR_0004s23630	POPTR_0004s23630 (11)	scaffold_4:22284335-22285707(+) (11)	NA	NA	NA	AT4G18530.1	Protein of unknown function (DUF707) 	LOC_Os01g69050.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g005170.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223267.1.S1_x_at	A	A1TS	POPTR_0004s23630	POPTR_0004s23630 (11)	scaffold_4:22283161-22285707(+) (11)	NA	NA	NA	AT4G18530.1	Protein of unknown function (DUF707) 	LOC_Os01g69050.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g005170.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223268.1.S1_at	A	A1TS	POPTR_0004s23640	POPTR_0004s23640 (11)	scaffold_4:22289021-22289530(+) (11)	NA	Q9SY69	Pentatricopeptide repeat-containing protein At1g10270	AT1G10270.1	glutamine-rich protein 23 	LOC_Os05g30240.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g159710.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223269.1.S1_at	A	A1TS	POPTR_0004s23650	POPTR_0004s23650 (11)	scaffold_4:22292820-22293046(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223270.1.S1_at	A	A1TS	POPTR_0004s23660	POPTR_0004s23660 (11)	scaffold_4:22294509-22294881(-) (11)	NA	NA	NA	AT1G10280.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os08g01890.1	"DNA binding protein, putative, expressed"	Medtr2g005200.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.223271.1.S1_s_at	A	A1TS	POPTR_0004s23670	POPTR_0004s23670 (11)	scaffold_4:22300733-22300960(+) (11)	NA	Q5XET6	"RNA pseudourine synthase 3, mitochondrial"	AT1G78910.1	Pseudouridine synthase family protein 	LOC_Os08g40860.1	"RNA pseudouridine synthase, putative, expressed"	AC151525_3.1	Pseudouridine synthase AC151525.18 5587-7823 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.223272.1.S1_at	A	A1TS	POPTR_0004s23670	POPTR_0004s23670 (11)	scaffold_4:22303096-22304451(+) (11)	NA	Q5XET6	"RNA pseudourine synthase 3, mitochondrial"	AT1G78910.1	Pseudouridine synthase family protein 	LOC_Os08g40860.1	"RNA pseudouridine synthase, putative, expressed"	AC151525_3.1	Pseudouridine synthase AC151525.18 5587-7823 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.223273.1.S1_at	A	A1TS	POPTR_0004s23680	POPTR_0004s23680 (11)	scaffold_4:22316465-22316740(+) (11)	NA	Q96282	Chloride channel protein CLC-c	AT5G49890.1	chloride channel C 	LOC_Os04g36560.2	"chloride channel protein, putative, expressed"	Medtr2g005270.1	"CBS; Cl- channel, voltage gated; Twin-arginine translocation pathway signal "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.223273.1.S1_x_at	A	A1TS	POPTR_0004s23680	POPTR_0004s23680 (11)	scaffold_4:22316465-22317165(+) (11)	NA	Q96282	Chloride channel protein CLC-c	AT5G49890.1	chloride channel C 	LOC_Os04g36560.2	"chloride channel protein, putative, expressed"	Medtr2g005270.1	"CBS; Cl- channel, voltage gated; Twin-arginine translocation pathway signal "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.223274.1.S1_s_at	A	A1TS	POPTR_0004s23700	POPTR_0004s23700 (11)	scaffold_4:22332126-22333792(-) (11)	NA	NA	NA	AT2G23390.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink). "	LOC_Os04g36062.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223275.1.S1_at	A	A1TS	POPTR_0004s23730	POPTR_0004s23730 (11)	scaffold_4:22353662-22353722(+) (11)	NA	Q9SY74	Zinc finger CCCH domain-containing protein 5	AT1G10320.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os02g35150.1	"splicing factor U2AF, putative, expressed"	Medtr2g005290.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.223275.1.S1_s_at	A	A1TS	POPTR_0004s23730	POPTR_0004s23730 (11)	scaffold_4:22352091-22353674(+) (11)	NA	Q9SY74	Zinc finger CCCH domain-containing protein 5	AT1G10320.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os02g35150.1	"splicing factor U2AF, putative, expressed"	Medtr2g005290.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.223276.1.S1_at	A	A1TS	POPTR_0004s23740	POPTR_0004s23740 (11)	scaffold_4:22356312-22356784(+) (11)	NA	Q9SY74	Zinc finger CCCH domain-containing protein 5	AT1G10320.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os02g35150.1	"splicing factor U2AF, putative, expressed"	Medtr2g005300.1	U2 auxiliary factor small subunit 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223277.1.S1_at	A	A1TS	POPTR_0004s23750	POPTR_0004s23750 (11)	scaffold_4:22371146-22372318(+) (11)	NA	P42285	Superkiller viralicidic activity 2-like 2	AT1G59760.1	"RNA helicase, ATP-dependent, SK12/DOB1 protein "	LOC_Os12g18140.1	"superkiller viralicidic activity 2-like 2, putative, expressed"	Medtr7g092260.1	"DEAD/DEAH box helicase, N-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.223280.1.S1_at	A	A1TS	POPTR_0004s23800	POPTR_0004s23800 (11)	scaffold_4:22431875-22432365(-) (11)	NA	Q8GZA6	Pentatricopeptide repeat-containing protein At1g71210	AT1G71210.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g03530.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g095620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223281.1.S1_at	A	A1TS	POPTR_0004s23810	POPTR_0004s23810 (11)	scaffold_4:22436145-22436219(-) (11)	NA	Q6DEY1	Survival of motor neuron-related-splicing factor 30	AT2G02570.4	nucleic acid binding;RNA binding 	LOC_Os08g01840.1	"nucleic acid binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223283.1.S1_at	A	A1TS	POPTR_0004s23830	POPTR_0004s23830 (11)	scaffold_4:22460061-22461607(-) (11)	NA	B7JW74	ATP-dependent Clp protease ATP-binding subunit ClpX	AT5G49840.1	ATP-dependent Clp protease 	LOC_Os02g35630.1	"AAA family ATPase, putative, expressed"	Medtr6g070390.1	"ClpX, ATPase regulatory subunit "	NA	GO:0005524|ATP binding	NA
PtpAffx.223284.1.S1_at	A	A1TS	POPTR_0004s23860	POPTR_0004s23860 (10)	scaffold_4:22481852-22482516(-) (10)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G14440.2	homeobox protein 31 	LOC_Os11g13930.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr7g035120.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223285.1.S1_at	A	A1TS	POPTR_0004s23920	POPTR_0004s23920 (11)	scaffold_4:22544933-22545852(+) (11)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	LOC_Os11g09160.1	"B3 DNA binding domain containing protein, expressed"	Medtr1g137930.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.223286.1.S1_at	A	A1TS	POPTR_0004s23930	POPTR_0004s23930 (11)	scaffold_4:22551003-22554281(+) (11)	NA	P69834	"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic"	AT2G02500.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os01g66360.1	"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed"	NA	NA	GO:0008299|isoprenoid biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.223287.1.S1_at	A	A1TS	POPTR_0004s23940	POPTR_0004s23940 (11)	scaffold_4:22555171-22557362(-) (11)	NA	P09122	DNA polymerase III subunit gamma/tau	AT2G02480.1	AAA-type ATPase family protein 	LOC_Os12g10670.1	"AAA-type ATPase family protein, putative, expressed"	Medtr2g021690.1	"AAA ATPase; DNA polymerase III clamp loader subunit, C-terminal "	NA	GO:0005524|ATP binding	NA
PtpAffx.223288.1.S1_at	A	A1MS	POPTR_0606s00230	POPTR_0606s00230 (10)	scaffold_606:10827-11444(-) (10)	NA	P0C8Q2	"Pentatricopeptide repeat-containing protein At4g19191, mitochondrial"	AT4G19191.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g05750.1	"pentatricopeptide, putative, expressed"	Medtr7g088050.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223290.1.S1_at	A	A1TS	POPTR_0004s23950	POPTR_0004s23950 (11)	scaffold_4:22584613-22586224(+) (11)	NA	A7HYV8	GTPase Der	AT5G39960.1	GTP binding;GTP binding 	LOC_Os01g12540.1	"GTPase of unknown function domain containing protein, putative, expressed"	NA	NA	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.223291.1.S1_at	A	A1TS	POPTR_0004s23970	POPTR_0004s23970 (11)	scaffold_4:22597293-22597679(-) (11)	NA	Q9FIW5	Putative NAC domain-containing protein 94	AT2G02450.2	NAC domain containing protein 35 	LOC_Os01g66490.1	"no apical meristem protein, putative, expressed"	Medtr5g043830.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.223291.1.S1_x_at	A	A1TS	POPTR_0004s23970	POPTR_0004s23970 (11)	scaffold_4:22597133-22597697(-) (11)	NA	Q9FIW5	Putative NAC domain-containing protein 94	AT2G02450.2	NAC domain containing protein 35 	LOC_Os01g66490.1	"no apical meristem protein, putative, expressed"	Medtr5g043830.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.223294.1.S1_at	A	A1TS	POPTR_0004s23980	POPTR_0004s23980 (11)	scaffold_4:22620269-22620520(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G02400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g74660.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr2g034190.1	NAD-dependent epimerase/dehydratase; Lipocalin 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.223296.1.S1_at	A	A1MS	POPTR_0004s24000	POPTR_0004s24000 (11)	scaffold_4:22637008-22637151(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.2	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223301.1.S1_at	A	A1TS	POPTR_0004s24030	POPTR_0004s24030 (9)	scaffold_4:22736949-22738987(-) (10)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223302.1.S1_s_at	A	A6TS	POPTR_0001s43910	POPTR_0007s08660 (10)//POPTR_0007s08670 (10)//POPTR_0004s24050 (10)//POPTR_0016s11070 (10)//POPTR_0001s43910 (10)//POPTR_0004s24040 (10)	scaffold_1:44300787-44300820(+) (10)//scaffold_12:4307663-4307696(+) (10)//scaffold_16:9631638-9631671(+) (10)//scaffold_1712:3463-3496(+) (10)//scaffold_18:6926631-6926664(+) (10)//scaffold_2:17428865-17428898(-) (10)//scaffold_2043:2817-2850(+) (10)//scaffold_4:22744672-22744705(+) (10)//scaffold_4:22755280-22755313(+) (10)//scaffold_435:14208-14241(+) (10)//scaffold_49:156523-156556(-) (9)//scaffold_5:9645012-9645045(+) (10)//scaffold_6:16548306-16548339(+) (9)//scaffold_7:7554146-7554179(-) (10)//scaffold_7:7571584-7571617(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223303.1.S1_x_at	A	A1TS	POPTR_0004s24050	POPTR_0004s24050 (11)	scaffold_4:22755259-22755812(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223306.1.S1_s_at	A	A5TS	POPTR_0004s24000	POPTR_0004s24020 (11)//POPTR_0004s24060 (11)//POPTR_0004s24000 (11)//POPTR_0018s00260 (11)//POPTR_0004s24010 (11)	scaffold_18:76987-77250(-) (11)//scaffold_4:22640311-22640573(-) (11)//scaffold_4:22659114-22659384(-) (11)//scaffold_4:22686184-22686461(-) (11)//scaffold_4:22800084-22800347(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.2	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223307.1.S1_s_at	A	A1TS	POPTR_0004s24020	POPTR_0004s24020 (9)	scaffold_4:22683779-22684208(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223308.1.S1_at	A	A1TS	POPTR_0004s24080	POPTR_0004s24080 (11)	scaffold_4:22823957-22824997(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21230.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223309.1.S1_at	A	A1TS	POPTR_0004s24100	POPTR_0004s24100 (11)	scaffold_4:22842688-22843255(+) (11)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223310.1.S1_at	A	A1TS	POPTR_0004s24110	POPTR_0004s24110 (10)	scaffold_4:22845238-22845686(-) (10)	NA	P33543	Putative kinase-like protein TMKL1	AT5G07620.1	Protein kinase superfamily protein 	LOC_Os04g46320.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g050080.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223311.1.S1_at	A	A1TS	POPTR_0004s24130	POPTR_0004s24130 (11)	scaffold_4:22859132-22859639(-) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT4G25160.1	U-box domain-containing protein kinase family protein 	LOC_Os06g04880.1	"serine threonine kinase, putative, expressed"	Medtr3g009640.1	Protein kinase; U box 	GO:0006950|response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.223312.1.S1_at	A	A1TS	POPTR_0004s24130	POPTR_0004s24130 (11)	scaffold_4:22863637-22863812(-) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT4G25160.1	U-box domain-containing protein kinase family protein 	LOC_Os06g04880.1	"serine threonine kinase, putative, expressed"	Medtr3g009640.1	Protein kinase; U box 	GO:0006950|response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.223317.1.S1_at	A	A1TS	POPTR_0004s24240	POPTR_0004s24240 (11)	scaffold_4:22952369-22952844(-) (11)	NA	NA	NA	AT5G45310.1	"unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g73110.1	expressed protein	Medtr5g025850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223318.1.S1_at	A	A1TS	POPTR_0004s24250	POPTR_0004s24250 (11)	scaffold_4:22956343-22957937(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223319.1.S1_at	A	A1TS	POPTR_0004s24260	POPTR_0004s24260 (11)	scaffold_4:22961600-22962110(-) (11)	NA	NA	NA	AT5G45320.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os06g49650.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g025810.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.223320.1.S1_at	A	A1TS	POPTR_0004s24280	POPTR_0004s24280 (11)	scaffold_4:22967158-22968896(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223321.1.S1_at	A	A1TS	POPTR_0004s24290	POPTR_0004s24290 (11)	scaffold_4:22972456-22972710(-) (11)	NA	NA	NA	AT2G35612.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr5g025790.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223322.1.S1_at	A	A1TS	POPTR_0004s24300	POPTR_0004s24300 (11)	scaffold_4:22978453-22978877(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223323.1.S1_at	A	A1TS	POPTR_0004s24310	POPTR_0004s24310 (11)	scaffold_4:23007284-23007732(+) (11)	NA	O65709	Long-chain-alcohol oxidase FAO4A	AT4G19380.1	Long-chain fatty alcohol dehydrogenase family protein 	LOC_Os02g40840.1	"alcohol oxidase, putative, expressed"	Medtr8g086690.1	"Glucose-methanol-choline oxidoreductase; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.223324.1.S1_at	A	A1TS	POPTR_0004s24320	POPTR_0004s24320 (11)	scaffold_4:23009599-23010467(+) (11)	NA	NA	NA	AT1G31720.1	Protein of unknown function (DUF1218) 	LOC_Os02g47450.1	expressed protein	Medtr5g025700.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223324.1.S1_s_at	A	A1TS	POPTR_0004s24320	POPTR_0004s24320 (11)	scaffold_4:23009181-23009558(+) (11)	NA	NA	NA	AT1G31720.1	Protein of unknown function (DUF1218) 	LOC_Os02g47450.1	expressed protein	Medtr5g025700.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223325.1.S1_at	A	A1TS	POPTR_0004s24330	POPTR_0004s24330 (11)	scaffold_4:23011576-23012441(-) (11)	NA	Q5R4R4	Protein LSM14 homolog A	AT5G45330.1	decapping 5-like 	LOC_Os01g02090.1	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223326.1.S1_at	A	A1TS	POPTR_0004s24350	POPTR_0004s24350 (11)	scaffold_4:23025106-23026864(+) (11)	NA	NA	NA	AT4G19350.1	embryo defective 3006 	LOC_Os08g06520.2	expressed protein	Medtr8g089330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223327.1.S1_at	A	A1TS	POPTR_0004s24360	POPTR_0004s24360 (11)	scaffold_4:23032339-23033362(-) (11)	NA	Q949P1	Abscisic acid 8'-hydroxylase 1	AT4G19230.1	"cytochrome P450, family 707, subfamily A, polypeptide 1 "	LOC_Os02g47470.1	"cytochrome P450, putative, expressed"	Medtr5g025670.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.223328.1.S1_at	A	A1TS	POPTR_0004s24380	POPTR_0004s24380 (11)	scaffold_4:23069836-23070435(-) (11)	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT1G49730.1	Protein kinase superfamily protein 	LOC_Os04g59320.1	"protein kinase domain containing protein, expressed"	Medtr4g130010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223329.1.S1_at	A	A1TS	POPTR_0004s24390	POPTR_0004s24390 (11)	scaffold_4:23077719-23078042(+) (11)	NA	NA	NA	AT2G35610.1	xyloglucanase 113 	LOC_Os03g38930.1	expressed protein	Medtr8g086800.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223330.1.S1_at	A	A1TS	POPTR_0004s24410	POPTR_0004s24410 (11)	scaffold_4:23085551-23086439(-) (11)	NA	A7SBF0	Integrator complex subunit 9 homolog	AT3G07530.1	CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). 	LOC_Os03g13960.2	expressed protein	Medtr3g020530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223331.1.S1_at	A	A1TS	POPTR_0004s24410	POPTR_0004s24410 (11)	scaffold_4:23090149-23090480(-) (11)	NA	A7SBF0	Integrator complex subunit 9 homolog	AT3G07530.1	CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). 	LOC_Os03g13960.2	expressed protein	Medtr3g020530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223332.1.S1_at	A	A1TS	POPTR_0004s24430	POPTR_0004s24430 (11)	scaffold_4:23099332-23100251(-) (11)	NA	Q9FHK0	F-box protein SKIP31	AT5G45360.1	F-box family protein 	LOC_Os06g49530.1	"OsFBX206 - F-box domain containing protein, expressed"	Medtr5g025590.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223333.1.S1_at	A	A1TS	POPTR_0004s24440	POPTR_0004s24440 (11)	scaffold_4:23108838-23109400(-) (11)	NA	Q8VZ67	Uncharacterized zinc finger CCHC domain-containing protein At4g19190	AT4G19190.1	zinc knuckle (CCHC-type) family protein 	LOC_Os06g49510.1	"zinc knuckle family protein, putative, expressed"	Medtr2g047090.1	"zinc knuckle family protein, putative "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.223334.1.S1_at	A	A1TS	POPTR_0004s24460	POPTR_0004s24460 (11)	scaffold_4:23133659-23134762(+) (11)	NA	Q3SZI7	Conserved oligomeric Golgi complex subunit 6	AT1G31780.1	CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os03g12460.1	"conserved oligomeric complex COG6 family protein, expressed"	Medtr5g025460.1	Conserved oligomeric complex COG6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223335.1.S1_at	A	A1TS	POPTR_0004s24470	POPTR_0004s24470 (11)	scaffold_4:23157237-23157610(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223336.1.S1_at	A	A1TS	POPTR_0004s24480	POPTR_0004s24480 (11)	scaffold_4:23164582-23165117(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223337.1.S1_at	A	A1TS	POPTR_0004s24500	POPTR_0004s24500 (11)	scaffold_4:23181515-23182032(+) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g60690.1	"pentatricopeptide, putative, expressed"	Medtr6g069810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223338.1.S1_at	A	A1TS	POPTR_0004s24510	POPTR_0004s24510 (11)	scaffold_4:23182522-23183782(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT4G19185.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os02g47500.1	"nodulin, putative, expressed"	Medtr8g086840.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.223341.1.S1_s_at	A	A2TS	POPTR_0017s01780	POPTR_0017s01780 (11)//POPTR_0017s01790 (11)	scaffold_17:1298108-1298351(-) (11)//scaffold_17:1310423-1310666(-) (11)	NA	Q54GU0	Putative transporter arsB	AT1G02260.1	Divalent ion symporter 	LOC_Os10g39980.1	expressed protein	Medtr8g039530.1	Citrate transporter 	GO:0015746|citrate transport	GO:0015137|citrate transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.223343.1.S1_x_at	A	A1TS	POPTR_0015s11910	POPTR_0015s11910 (11)	scaffold_15:12410978-12411535(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223348.1.S1_at	A	A1TS	POPTR_0013s11600	POPTR_0013s11600 (11)	scaffold_13:12243519-12244472(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g073480.1	"Uncharacterized 24.1 kDa protein in LEF4-P33 intergenic region, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223352.1.S1_s_at	A	A1TS	POPTR_0005s15880	POPTR_0005s15880 (11)	scaffold_5:12515667-12522317(-) (11)	POPTR_0005s15860 (8)	Q494P0	Probable inorganic phosphate transporter 1-7	AT3G54700.1	phosphate transporter 1;7 	LOC_Os08g45000.1	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.223357.1.S1_at	A	A1TS	POPTR_0013s07860	POPTR_0013s07860 (11)	scaffold_13:6791219-6791417(+) (11)	POPTR_0001s13390 (6)	NA	NA	AT5G41080.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223358.1.S1_at	A	A1TS	POPTR_0013s07930	POPTR_0013s07930 (11)	scaffold_13:6867403-6871018(-) (11)	NA	Q5PQS6	Protein SMG9	NA	NA	LOC_Os06g02430.1	expressed protein	Medtr5g007770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223359.1.S1_at	A	A1TS	POPTR_0013s07980	POPTR_0013s07980 (11)	scaffold_13:6897328-6897687(-) (11)	NA	NA	NA	AT3G03130.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17160.1); Has 7130 Blast hits to 3690 proteins in 504 species: Archae - 22; Bacteria - 2666; Metazoa - 1654; Fungi - 721; Plants - 246; Viruses - 56; Other Eukaryotes - 1765 (source: NCBI BLink). 	LOC_Os02g47130.1	expressed protein	Medtr4g106890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223360.1.S1_at	A	A1TS	POPTR_0013s08000	POPTR_0013s08000 (11)	scaffold_13:6918391-6918945(+) (11)	NA	P59278	Uncharacterized protein At1g51745	AT3G03140.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os02g47170.1	expressed protein	Medtr4g106850.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223361.1.S1_s_at	A	A1TS	POPTR_0013s08030	POPTR_0013s08030 (11)	scaffold_13:6922483-6924933(-) (11)	NA	Q94AI7	Protein TOPLESS	AT1G15750.4	Transducin family protein / WD-40 repeat family protein 	LOC_Os08g06480.1	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr2g126840.2	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223362.1.S1_at	A	A1TS	POPTR_0013s08040	POPTR_0013s08040 (11)	scaffold_13:6947980-6948583(-) (11)	NA	Q8L5T5	LOB domain-containing protein 15	AT2G40470.1	LOB domain-containing protein 15 	LOC_Os01g60960.1	"DUF260 domain containing protein, putative, expressed"	Medtr3g145030.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223363.1.S1_at	A	A2TS	POPTR_0013s08070	POPTR_0013s08070 (11)//POPTR_0785s00200 (11)	scaffold_13:6986979-6987558(-) (11)//scaffold_785:4597-5176(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g07240.1	expressed protein	Medtr5g091410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223364.1.S1_at	A	A1TS	POPTR_0013s08100	POPTR_0013s08100 (11)	scaffold_13:7022236-7022532(+) (11)	NA	Q9SRK7	Adenine/guanine permease AZG1	AT3G10960.1	AZA-guanine resistant1 	LOC_Os05g26840.1	"permease domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223365.1.S1_at	A	A1TS	POPTR_0013s08140	POPTR_0013s08140 (11)	scaffold_13:7126163-7128849(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223366.1.S1_at	A	A1TS	POPTR_0013s08160	POPTR_0013s08160 (10)	scaffold_13:7191748-7192437(+) (10)	NA	NA	NA	AT2G30300.1	Major facilitator superfamily protein 	LOC_Os05g39800.1	"NFD4, putative, expressed"	Medtr5g026470.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223367.1.S1_at	A	A1TS	POPTR_0013s08230	POPTR_0013s08230 (10)	scaffold_13:7256070-7256578(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223369.1.S1_at	A	A1TS	POPTR_0013s08280	POPTR_0013s08280 (11)	scaffold_13:7346214-7346742(+) (11)	NA	B0KWH8	THO complex subunit 2	AT1G24706.1	THO2 	LOC_Os01g68810.1	expressed protein	Medtr4g156300.1	"F5A9.21, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223369.1.S1_x_at	A	A1TS	POPTR_0013s08280	POPTR_0013s08280 (11)	scaffold_13:7346110-7346742(+) (11)	NA	B0KWH8	THO complex subunit 2	AT1G24706.1	THO2 	LOC_Os01g68810.1	expressed protein	Medtr4g156300.1	"F5A9.21, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223370.1.S1_at	A	A1TS	POPTR_0013s08290	POPTR_0013s08290 (11)	scaffold_13:7355614-7356167(+) (11)	NA	P83304	Mannose/glucose-specific lectin (Fragment)	AT1G19715.1	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.3	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223372.1.S1_at	A	A1TS	POPTR_0013s08310	POPTR_0013s08310 (10)	scaffold_13:7373282-7375185(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223373.1.S1_at	A	A1TS	POPTR_0013s08330	POPTR_0013s08330 (10)	scaffold_13:7402815-7403504(-) (10)	NA	Q9M8R7	Probable protein phosphatase 2C 33	AT3G02750.2	Protein phosphatase 2C family protein 	LOC_Os08g39100.1	"protein phosphatase 2C, putative, expressed"	Medtr7g089830.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223374.1.S1_at	A	A1TS	POPTR_0013s08360	POPTR_0013s08360 (11)	scaffold_13:7437281-7437815(-) (11)	NA	NA	NA	AT5G16460.1	Putative adipose-regulatory protein (Seipin) 	LOC_Os12g05330.1	"protein of unknown function containing protein, expressed"	Medtr7g089670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223376.1.S1_at	A	A1TS	POPTR_0013s08380	POPTR_0013s08380 (11)	scaffold_13:7460300-7462372(+) (11)	NA	Q9C5T3	Probable WRKY transcription factor 26	AT5G07100.1	WRKY DNA-binding protein 26 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.223377.1.S1_at	A	A1TS	POPTR_0013s08390	POPTR_0013s08390 (11)	scaffold_13:7523322-7523837(+) (11)	NA	P17801	Putative receptor protein kinase ZmPK1	AT4G00340.1	receptor-like protein kinase 4 	LOC_Os01g48020.1	"S-locus-like receptor protein kinase, putative, expressed"	Medtr3g034050.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223380.1.S1_s_at	A	A1TS	POPTR_0013s08420	POPTR_0013s08420 (11)	scaffold_13:7557840-7558416(-) (11)	NA	NA	NA	AT3G02790.1	zinc finger (C2H2 type) family protein 	LOC_Os06g49490.1	"ZOS6-10 - C2H2 zinc finger protein, expressed"	Medtr7g089600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223382.1.S1_at	A	A1TS	POPTR_0013s08530	POPTR_0013s08530 (11)	scaffold_13:7803149-7803185(+) (11)	NA	O80809	Leucine-rich repeat receptor-like protein CLAVATA2	AT1G65380.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g39100.1	"fasciated ear2, putative, expressed"	Medtr7g089330.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.223383.1.S1_s_at	A	A1TS	POPTR_0013s08560	POPTR_0013s08560 (11)	scaffold_13:7820593-7823557(-) (11)	NA	NA	NA	AT5G16520.1	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g01040.3	expressed protein	Medtr7g089290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223384.1.S1_at	A	A1TS	POPTR_0013s08566	POPTR_0013s08566 (11)	scaffold_13:7871196-7871404(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223385.1.S1_at	A	A1TS	POPTR_0013s08570	POPTR_0013s08570 (11)	scaffold_13:7874235-7874425(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223385.1.S1_x_at	A	A1TS	POPTR_0013s08570	POPTR_0013s08570 (11)	scaffold_13:7874219-7874413(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223386.1.S1_at	A	A1TS	POPTR_0013s08580	POPTR_0013s08580 (11)	scaffold_13:7875119-7876149(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223390.1.S1_at	A	A1TS	POPTR_0011s09420	POPTR_0011s09420 (11)	scaffold_11:11660060-11661468(-) (11)	NA	Q6QNU4	DNA damage-binding protein 1	AT4G05420.1	damaged DNA binding protein 1A 	LOC_Os05g51480.2	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr4g137930.1	"CPSF A subunit, C-terminal; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223390.1.S1_s_at	A	A1TS	POPTR_0011s09420	POPTR_0011s09420 (11)	scaffold_11:11660101-11662622(-) (11)	NA	Q6QNU4	DNA damage-binding protein 1	AT4G05420.1	damaged DNA binding protein 1A 	LOC_Os05g51480.2	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr4g137930.1	"CPSF A subunit, C-terminal; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223391.1.S1_s_at	A	A1TS	POPTR_0011s09410	POPTR_0011s09410 (10)	scaffold_11:11651551-11652296(-) (11)	NA	Q6QNU4	DNA damage-binding protein 1	AT4G05420.2	damaged DNA binding protein 1A 	LOC_Os05g51480.1	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr4g137930.1	"CPSF A subunit, C-terminal; WD40-like "	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.223394.1.S1_at	A	A1MA	POPTR_0004s18120	POPTR_0004s18120 (11)	scaffold_4:18118187-18120836(-) (11)	NA	NA	NA	AT4G35040.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os06g50310.1	"E2F-related protein, putative, expressed"	Medtr4g098490.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.223399.1.S1_at	A	A1TS	POPTR_0004s23270	POPTR_0004s23270 (11)	scaffold_4:22064036-22064512(+) (11)	NA	Q9LU46	DEAD-box ATP-dependent RNA helicase 35	AT5G51280.1	"DEAD-box protein abstrakt, putative "	LOC_Os02g05660.1	"DEAD-box ATP-dependent RNA helicase 35A, putative, expressed"	Medtr1g122060.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0008270|zinc ion binding||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.223400.1.S1_s_at	A	A1TS	POPTR_0004s06050	POPTR_0004s06050 (11)	scaffold_4:4819420-4819916(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os04g23760.1	"lectin protein kinase family protein, putative"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223403.1.S1_at	A	A1MS	POPTR_0017s11250	POPTR_0017s11250 (9)	scaffold_17:10967125-10967390(+) (9)	POPTR_0017s11270 (8)//POPTR_0017s11240 (8)	Q9C952	Cleavage and polyadenylation specificity factor subunit 3-I	AT1G61010.3	cleavage and polyadenylation specificity factor 73-I 	LOC_Os03g63590.1	"metallo-beta-lactamase, putative, expressed"	Medtr2g006480.1	Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223406.1.S1_at	A	A1TS	POPTR_0001s32090	POPTR_0001s32090 (11)	scaffold_1:30513536-30513733(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223406.1.S1_x_at	A	A1TS	POPTR_0001s32090	POPTR_0001s32090 (11)	scaffold_1:30513536-30513733(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223408.1.S1_at	A	A1TS	POPTR_0017s08385	POPTR_0017s08385 (11)	scaffold_17:6913053-6913363(+) (11)	NA	O82380	"Pentatricopeptide repeat-containing protein At2g29760, chloroplastic"	AT2G29760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g53050.1	"tetratricopeptide-like helical, putative, expressed"	Medtr8g079150.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223409.1.S1_at	A	A1TS	POPTR_0017s08390	POPTR_0017s08390 (9)	scaffold_17:6925682-6927217(+) (9)	NA	Q9NVG8	TBC1 domain family member 13	AT4G13730.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g68010.1	"TBC domain containing protein, expressed"	Medtr3g105370.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.223410.1.S1_at	A	A1TS	POPTR_0017s08440	POPTR_0017s08440 (11)	scaffold_17:6967021-6967479(-) (11)	NA	Q9D099	Alkaline ceramidase 3	AT4G22330.1	Alkaline phytoceramidase (aPHC) 	LOC_Os03g49180.1	"alkaline phytoceramidase, putative, expressed"	Medtr2g029600.1	Alkaline phytoceramidase 	GO:0006672|ceramide metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0000139|Golgi membrane||GO:0071212|subsynaptic reticulum
PtpAffx.223411.1.S1_at	A	A1TS	POPTR_0017s08440	POPTR_0017s08440 (11)	scaffold_17:6967817-6968266(-) (11)	NA	Q9D099	Alkaline ceramidase 3	AT4G22330.1	Alkaline phytoceramidase (aPHC) 	LOC_Os03g49180.1	"alkaline phytoceramidase, putative, expressed"	Medtr2g029600.1	Alkaline phytoceramidase 	GO:0006672|ceramide metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0000139|Golgi membrane||GO:0071212|subsynaptic reticulum
PtpAffx.223413.1.S1_at	A	A1TS	POPTR_0017s08480	POPTR_0017s08480 (11)	scaffold_17:7061217-7061802(+) (11)	NA	Q8GXC7	F-box/kelch-repeat protein At3g06240	AT3G06240.1	F-box family protein 	LOC_Os12g06740.2	"OsFBX440 - F-box domain containing protein, expressed"	Medtr4g024270.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223415.1.S1_at	A	A1TS	POPTR_0017s08490	POPTR_0017s08490 (11)	scaffold_17:7065491-7066014(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g143100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.223416.1.S1_at	A	A1TS	POPTR_0017s08500	POPTR_0017s08500 (11)	scaffold_17:7074429-7074876(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g133460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223418.1.S1_at	A	A1TS	POPTR_0017s08550	POPTR_0017s08550 (11)	scaffold_17:7130275-7130955(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g63040.1	expressed protein	Medtr3g105200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223419.1.S1_at	A	A1TS	POPTR_0017s08560	POPTR_0017s08560 (11)	scaffold_17:7142858-7143188(-) (11)	NA	Q8GXC7	F-box/kelch-repeat protein At3g06240	AT3G06240.1	F-box family protein 	LOC_Os06g19670.1	OsFBX196 - F-box domain containing protein	Medtr3g006090.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223421.1.S1_at	A	A1TS	POPTR_0017s08670	POPTR_0017s08670 (11)	scaffold_17:7308409-7308757(-) (11)	NA	NA	NA	AT4G14010.1	ralf-like 32 	NA	NA	Medtr4g132720.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223422.1.S1_at	A	A1TS	POPTR_0017s08750	POPTR_0017s08750 (11)	scaffold_17:7362064-7362499(+) (11)	NA	Q9LW32	"Pentatricopeptide repeat-containing protein At3g26782, mitochondrial"	AT3G26782.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g20420.1	"tetratricopeptide-like helical, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223423.1.S1_at	A	A1TS	POPTR_0017s08760	POPTR_0017s08760 (10)	scaffold_17:7368079-7368292(+) (11)	NA	Q9LW32	"Pentatricopeptide repeat-containing protein At3g26782, mitochondrial"	AT3G26782.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g20420.1	"tetratricopeptide-like helical, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223425.1.S1_at	A	A1TS	POPTR_0017s08770	POPTR_0017s08770 (11)	scaffold_17:7369077-7369611(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223430.1.S1_at	A	A1TS	POPTR_0017s08820	POPTR_0017s08820 (9)	scaffold_17:7407332-7409694(-) (10)	NA	Q9LW31	B3 domain-containing transcription factor FUS3	AT3G26790.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g51610.1	"B3 DNA binding domain containing protein, expressed"	Medtr7g096720.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.223431.1.S1_at	A	A1TS	POPTR_0017s08850	POPTR_0017s08850 (11)	scaffold_17:7475011-7475334(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223433.1.S1_at	A	A1TS	POPTR_0017s08960	POPTR_0017s08960 (10)	scaffold_17:7589894-7590412(-) (10)	NA	NA	NA	AT3G26890.5	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42420.1	expressed protein	Medtr7g094450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223434.1.S1_at	A	A1MS	POPTR_0019s08990	POPTR_0019s08990 (10)	scaffold_17:7596351-7596397(-) (11)//scaffold_19:10596538-10596581(-) (10)	NA	O48639	Probable inorganic phosphate transporter 1-3	AT5G43360.1	phosphate transporter 1;3 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr5g076920.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.223434.1.S1_s_at	A	A1TS	POPTR_0019s08990	POPTR_0019s08990 (11)	scaffold_17:7596387-7596596(-) (11)//scaffold_19:10596574-10596783(-) (11)	NA	O48639	Probable inorganic phosphate transporter 1-3	AT5G43360.1	phosphate transporter 1;3 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr5g076920.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.223436.1.S1_s_at	A	A1TS	POPTR_0017s08990	POPTR_0017s08990 (11)	scaffold_17:7642400-7642944(+) (11)	NA	P0C897	Putative UPF0481 protein At3g02645	AT3G02645.1	Plant protein of unknown function (DUF247) 	LOC_Os06g08120.1	"plant protein of unknown function domain containing protein, expressed"	Medtr4g006270.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223438.1.S1_at	A	A1TS	POPTR_0017s09000	POPTR_0017s09000 (11)	scaffold_17:7659110-7659504(-) (11)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g33510.2	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g094460.2	"Uncharacterized protein At2g33490, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223439.1.S1_at	A	A1TS	POPTR_0017s09020	POPTR_0017s09020 (11)	scaffold_17:7676814-7677852(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223440.1.S1_at	A	A1TS	POPTR_0017s09040	POPTR_0017s09040 (11)	scaffold_17:7693794-7694310(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223441.1.S1_at	A	A1TS	POPTR_0017s09060	POPTR_0017s09060 (11)	scaffold_17:7739169-7739639(-) (11)	POPTR_0172s00195 (8)	Q39008	Mitogen-activated protein kinase kinase kinase 1	AT4G08480.1	mitogen-activated protein kinase kinase kinase 9 	LOC_Os03g49640.2	"STE_MEKK_ste11_MAP3K.14 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g098410.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223442.1.S1_s_at	A	A2TS	POPTR_0001s33280	POPTR_0017s09580 (11)//POPTR_0001s33280 (11)	scaffold_1:31474888-31475372(-) (11)//scaffold_17:8207209-8207696(-) (11)	NA	NA	NA	AT5G41070.1	dsRNA-binding protein 5 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.223443.1.S1_at	A	A1TS	POPTR_0017s09590	POPTR_0017s09590 (11)	scaffold_17:8215288-8215676(-) (11)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os09g33450.2	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.223444.1.S1_at	A	A1TS	POPTR_0017s09620	POPTR_0017s09620 (11)	scaffold_17:8269255-8270102(-) (11)	NA	Q55CU8	Random slug protein 5	AT1G01630.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g63370.1	"CRAL/TRIO domain containing protein, expressed"	Medtr3g151400.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223445.1.S1_at	A	A1TS	POPTR_0017s09630	POPTR_0017s09630 (11)	scaffold_17:8292020-8292286(-) (11)	NA	P38385	Protein transport protein Sec61 subunit gamma	AT5G50460.1	secE/sec61-gamma protein transport protein 	LOC_Os06g44374.1	"protein transport protein SEC61 subunit gamma, putative, expressed"	Medtr5g091490.1	Protein secE/sec61-gamma protein 	GO:0006605|protein targeting	NA	GO:0016020|membrane
PtpAffx.223446.1.S1_at	A	A1TS	POPTR_0017s09650	POPTR_0017s09650 (11)	scaffold_17:8314341-8314921(-) (11)	NA	NA	NA	AT3G01930.1	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223447.1.S1_s_at	A	A1MS	POPTR_0001s26380	POPTR_0001s26380 (11)	scaffold_1:25412405-25412621(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223448.1.S1_at	A	A1TS	POPTR_0017s09710	POPTR_0017s09710 (11)	scaffold_17:8341173-8341352(+) (11)	NA	NA	NA	AT3G48660.1	Protein of unknown function (DUF 3339) 	LOC_Os02g30470.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223450.1.S1_at	A	A1TS	POPTR_0017s09750	POPTR_0017s09750 (11)	scaffold_17:8383788-8385471(-) (11)	NA	Q9FYA2	Probable WRKY transcription factor 75	AT5G13080.1	WRKY DNA-binding protein 75 	LOC_Os11g29870.1	"OsWRKY72 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088920.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.223451.1.S1_at	A	A1TS	POPTR_0017s09780	POPTR_0017s09780 (11)	scaffold_17:8405835-8407947(+) (11)	NA	Q8LEF6	"ABC transporter I family member 11, chloroplastic"	AT5G14100.1	non-intrinsic ABC protein 14 	LOC_Os11g29850.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g018480.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.223454.1.S1_at	A	A1TS	POPTR_0017s09820	POPTR_0017s09820 (11)	scaffold_17:8460401-8461035(+) (11)	NA	Q9LSD5	Transcription factor TCP20	AT3G27010.1	"TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 "	LOC_Os01g69980.1	"TCP family transcription factor, putative, expressed"	Medtr7g018180.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223455.1.S1_at	A	A1TS	POPTR_0017s09830	POPTR_0017s09830 (11)	scaffold_17:8494240-8494381(-) (11)	NA	NA	NA	AT1G27430.1	GYF domain-containing protein 	LOC_Os01g69990.1	"GYF domain containing protein, putative, expressed"	Medtr7g017890.1	"GYF domain-containing protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223456.1.S1_at	A	A1TS	POPTR_0017s09840	POPTR_0017s09840 (11)	scaffold_17:8545548-8546702(+) (11)	NA	Q67ZU1	Triacylglycerol lipase 2	AT5G14180.1	Myzus persicae-induced lipase 1 	LOC_Os08g41780.1	"triacylglycerol lipase precursor, putative, expressed"	Medtr6g025490.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.223458.1.S1_at	A	A1TS	POPTR_0017s09880	POPTR_0017s09880 (11)	scaffold_17:8593248-8594321(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223460.1.S1_at	A	A1TS	POPTR_0017s09900	POPTR_0017s09900 (11)	scaffold_17:8626234-8627063(+) (11)	NA	Q9JIX0	Enhancer of yellow 2 transcription factor homolog	AT3G27100.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 288 Blast hits to 288 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). "	LOC_Os01g69110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223461.1.S1_at	A	A1TS	POPTR_0017s09910	POPTR_0017s09910 (11)	scaffold_17:8632090-8632911(-) (11)	NA	P37707	B2 protein	AT3G27090.1	DCD (Development and Cell Death) domain protein 	LOC_Os05g41930.3	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223466.1.S1_at	A	A1TS	POPTR_0017s09940	POPTR_0017s09940 (11)	scaffold_1006:858-1064(-) (9)//scaffold_17:8704371-8704577(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223466.1.S1_x_at	A	A1TS	POPTR_0017s09940	POPTR_0017s09940 (11)	scaffold_1006:858-1064(-) (9)//scaffold_17:8703358-8704577(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223471.1.S1_s_at	A	A1TS	POPTR_0013s03620	POPTR_0013s03620 (11)	scaffold_13:2306444-2306678(+) (11)	POPTR_0013s03400 (7)	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.223472.1.S1_at	A	A1TS	POPTR_0001s19040	POPTR_0001s19040 (10)	scaffold_1:16352186-16352385(-) (11)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os02g37790.1	"retrotransposon protein, putative, unclassified"	Medtr6g036460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223478.1.S1_s_at	A	A1TS	POPTR_0002s26310	POPTR_0002s26310 (11)	scaffold_2:23305753-23307433(+) (11)	NA	NA	NA	AT5G42950.1	GYF domain-containing protein 	LOC_Os07g04530.1	"GYF domain containing protein, putative, expressed"	Medtr7g017760.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223479.1.S1_s_at	A	A1TS	POPTR_0002s26310	POPTR_0002s26310 (11)	scaffold_2:23309023-23309527(+) (11)	NA	NA	NA	AT5G42950.1	GYF domain-containing protein 	LOC_Os07g04530.1	"GYF domain containing protein, putative, expressed"	Medtr7g017760.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22348.1.S1_at	A	A1TS	POPTR_0002s24100	POPTR_0002s24100 (11)	scaffold_2:21543664-21543781(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.22348.1.S1_s_at	A	A1TS	POPTR_0002s24100	POPTR_0002s24100 (11)	scaffold_2:21543897-21544147(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223484.1.S1_s_at	A	A2TS	POPTR_0003s20060	POPTR_1908s00200 (11)//POPTR_0003s20060 (11)	scaffold_1908:2602-4117(-) (11)//scaffold_3:18663855-18665359(+) (11)	NA	NA	NA	AT1G29050.1	TRICHOME BIREFRINGENCE-LIKE 38 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g021900.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223485.1.S1_s_at	A	A1TS	POPTR_0018s06070	POPTR_0018s06070 (11)	scaffold_18:5740340-5740481(-) (11)	NA	NA	NA	AT5G03190.2	conserved peptide upstream open reading frame 47 	NA	NA	Medtr7g121400.1	"CPuORF47, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223486.1.S1_at	A	A1TS	POPTR_0002s18970	POPTR_0002s18970 (11)	scaffold_2:14859414-14859448(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.223486.1.S1_s_at	A	A2TS	POPTR_0002s18970	POPTR_0002s18970 (11)//POPTR_0014s10960 (11)	scaffold_14:8182219-8182592(+) (11)//scaffold_2:14859397-14860241(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.223487.1.S1_s_at	A	A2TS	POPTR_0008s19530	POPTR_0014s11690 (11)//POPTR_0008s19530 (11)	scaffold_14:8669888-8670126(+) (11)//scaffold_8:13460178-13460413(+) (11)	POPTR_0014s11660 (6)	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.1	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.223488.1.S1_s_at	A	A2TS	POPTR_0008s19540	POPTR_0014s11670 (11)//POPTR_0008s19540 (11)	scaffold_14:8640188-8641234(-) (11)//scaffold_8:13461153-13462206(-) (11)	NA	O22267	Histidine kinase CKI1	AT2G47430.1	Signal transduction histidine kinase 	LOC_Os06g08450.1	"histidine kinase, putative"	Medtr1g106850.1	Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.223489.1.S1_s_at	A	A1TS	POPTR_0014s11690	POPTR_0014s11690 (11)	scaffold_14:8667135-8667262(+) (11)//scaffold_8:13456972-13457069(+) (9)	NA	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.1	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.223490.1.S1_at	A	A1TS	POPTR_0005s25090	POPTR_0005s25090 (11)	scaffold_5:23432759-23433192(+) (11)	NA	Q9SU08	Auxilin-related protein 1	AT1G75310.1	auxin-like 1 protein 	LOC_Os05g50370.1	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223491.1.S1_at	A	A1TS	POPTR_0022s00210	POPTR_0022s00210 (9)	scaffold_22:9825-10291(+) (9)	NA	NA	NA	AT1G10280.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g52120.1	"DNA binding protein, putative, expressed"	Medtr5g007070.1	"Protein of unknown function DUF266, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223495.1.S1_at	A	A1TS	POPTR_0009s00850	POPTR_0009s00850 (11)	scaffold_9:957012-957278(-) (11)	NA	Q5QQ56	Xylosyltransferase 1	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g40060.1	"glycosyltransferase family protein, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.223495.1.S1_s_at	A	A1TS	POPTR_0009s00850	POPTR_0009s00850 (11)	scaffold_9:957031-957314(-) (11)	NA	Q5QQ56	Xylosyltransferase 1	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g40060.1	"glycosyltransferase family protein, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.223496.1.S1_at	A	A1TS	POPTR_0046s00240	POPTR_0046s00240 (10)	scaffold_46:41254-50099(+) (10)	NA	NA	NA	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.2	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223496.1.S1_x_at	A	A1TS	POPTR_0046s00240	POPTR_0046s00240 (11)	scaffold_46:41254-50099(+) (11)	NA	NA	NA	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.2	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223497.1.S1_at	A	A1TS	POPTR_0005s27960	POPTR_0005s27960 (11)	scaffold_5:25385155-25385344(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223498.1.S1_at	A	A1MS	POPTR_0018s01340	POPTR_0018s01340 (10)	scaffold_18:1301660-1301708(+) (10)	NA	O22567	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT5G11380.1	1-deoxy-D-xylulose 5-phosphate synthase 3 	LOC_Os06g05100.2	"transketolase, putative, expressed"	Medtr3g136470.1	"Transketolase, C-terminal "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.223498.1.S1_s_at	A	A2TS	POPTR_0006s26580	POPTR_0018s01340 (11)//POPTR_0006s26580 (11)	scaffold_18:1300799-1301480(+) (11)//scaffold_6:24752556-24753245(+) (11)	NA	Q38854	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT5G11380.1	1-deoxy-D-xylulose 5-phosphate synthase 3 	LOC_Os06g05100.1	"transketolase, putative, expressed"	Medtr3g136470.1	"Transketolase, C-terminal "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.223501.1.S1_s_at	A	A1TS	POPTR_0016s11570	POPTR_0016s11570 (11)	scaffold_16:10796520-10796838(-) (11)//scaffold_91:16330-16679(+) (9)	POPTR_0091s00230 (7)	Q9FM89	F-box/FBD/LRR-repeat protein At5g56420	AT5G56420.2	F-box/RNI-like/FBD-like domains-containing protein 	LOC_Os07g06500.1	"OsFBL34 - F-box domain and LRR containing protein, expressed"	Medtr7g143210.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223503.1.S1_s_at	A	A2TS	POPTR_0006s26140	POPTR_0006s26140 (11)//POPTR_0242s00230 (11)	scaffold_242:23832-24481(+) (11)//scaffold_6:24425964-24426618(+) (11)	NA	P92960	Potassium channel KAT3	AT4G32650.3	potassium channel in Arabidopsis thaliana 3 	LOC_Os01g52070.1	"potassium channel AKT1, putative, expressed"	Medtr3g135850.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.223504.1.S1_s_at	A	A2TS	POPTR_0006s26140	POPTR_0006s26140 (11)//POPTR_0242s00230 (11)	scaffold_242:25301-25502(+) (11)//scaffold_6:24427447-24427648(+) (11)	NA	P92960	Potassium channel KAT3	AT4G32650.3	potassium channel in Arabidopsis thaliana 3 	LOC_Os01g52070.1	"potassium channel AKT1, putative, expressed"	Medtr3g135850.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.223522.1.S1_s_at	A	A1TS	POPTR_0011s03440	POPTR_0011s03440 (10)	scaffold_11:3546840-3547202(+) (10)	NA	Q84LB2	"(E,E)-alpha-farnesene synthase"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr7g010000.1	Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.223523.1.S1_at	A	A2TS	POPTR_0008s01680	POPTR_0008s01680 (11)//POPTR_0162s00210 (11)	scaffold_162:8010-8148(+) (11)//scaffold_8:815184-815322(-) (11)	NA	P19525	"Interferon-induced, double-stranded RNA-activated protein kinase"	AT3G59410.1	protein kinase family protein 	LOC_Os04g41510.1	"serine/threonine-protein kinase GCN2, putative, expressed"	Medtr7g130230.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223523.1.S1_s_at	A	A2TS	POPTR_0008s01680	POPTR_0008s01680 (11)//POPTR_0162s00210 (10)	scaffold_162:7429-7804(+) (10)//scaffold_8:815497-815872(-) (11)	NA	P19525	"Interferon-induced, double-stranded RNA-activated protein kinase"	AT3G59410.1	protein kinase family protein 	LOC_Os04g41510.1	"serine/threonine-protein kinase GCN2, putative, expressed"	Medtr7g130230.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223524.1.S1_at	A	A1TS	POPTR_0162s00210	POPTR_0162s00210 (9)	scaffold_162:7009-7355(+) (11)	NA	Q9LX30	Probable serine/threonine-protein kinase GCN2	AT3G59410.1	protein kinase family protein 	LOC_Os04g41510.1	"serine/threonine-protein kinase GCN2, putative, expressed"	Medtr1g125600.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223524.1.S1_s_at	A	A2TS	POPTR_0008s01680	POPTR_0008s01680 (11)//POPTR_0162s00210 (11)	scaffold_162:6799-7344(+) (11)//scaffold_8:815957-816505(-) (11)	NA	P19525	"Interferon-induced, double-stranded RNA-activated protein kinase"	AT3G59410.1	protein kinase family protein 	LOC_Os04g41510.1	"serine/threonine-protein kinase GCN2, putative, expressed"	Medtr7g130230.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223530.1.S1_at	A	A1TS	POPTR_0017s02140	POPTR_0017s02140 (11)	scaffold_17:1565534-1566135(+) (11)	POPTR_0017s02120 (8)	NA	NA	AT3G54230.2	suppressor of abi3-5 	LOC_Os02g07070.2	"RNA recognition motif family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223530.1.S1_s_at	A	A1TS	POPTR_0017s02140	POPTR_0017s02140 (11)	scaffold_17:1564979-1565547(+) (11)	NA	NA	NA	AT3G54230.2	suppressor of abi3-5 	LOC_Os02g07070.2	"RNA recognition motif family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223531.1.S1_s_at	A	A1TS	POPTR_0019s08160	POPTR_0019s08160 (11)	scaffold_19:9610631-9611446(-) (11)	NA	P37890	Serine carboxypeptidase 1	AT4G12910.1	serine carboxypeptidase-like 20 	LOC_Os12g15470.2	"OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr7g089840.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.223533.1.S1_at	A	A1TS	POPTR_0013s07830	POPTR_0013s07830 (11)	scaffold_13:6720082-6720967(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223535.1.S1_s_at	A	A1TS	POPTR_0016s02265	POPTR_0016s02265 (11)	scaffold_16:1100054-1100725(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.223536.1.S1_at	A	A1MS	POPTR_0019s02680	POPTR_0019s02680 (9)	scaffold_19:2482421-2482482(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223538.1.S1_at	A	A1TS	POPTR_2763s00200	POPTR_2763s00200 (9)	scaffold_2763:373-892(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223541.1.S1_x_at	A	A2MS	POPTR_0008s16930	POPTR_0008s16930 (11)//POPTR_0008s18760 (11)	scaffold_8:11379981-11380156(-) (11)//scaffold_8:12774687-12774862(-) (11)	NA	Q8S403	Phosphate transporter PHO1	AT3G23430.1	phosphate 1 	LOC_Os02g56510.1	"phosphate transporter 1, putative, expressed"	Medtr1g090210.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.223542.1.S1_at	A	A1TS	POPTR_0002s22520	POPTR_0002s22520 (11)	scaffold_11:8648583-8648697(+) (9)//scaffold_2:19263482-19263606(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223542.1.S1_x_at	A	A1TS	POPTR_0002s22520	POPTR_0002s22520 (11)	scaffold_11:8648511-8648697(+) (10)//scaffold_2:19263420-19263606(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223543.1.S1_s_at	A	A1MS	POPTR_0015s15530	POPTR_0015s15530 (10)	scaffold_15:14781216-14782012(+) (10)	POPTR_1013s00010 (6)	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	NA	NA	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223551.1.S1_at	A	A1TS	POPTR_0006s22680	POPTR_0006s22680 (11)	scaffold_6:21621138-21621542(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223552.1.S1_at	A	A1TS	POPTR_0006s22660	POPTR_0006s22660 (9)	scaffold_6:21596511-21596897(+) (9)//scaffold_6:21626391-21629837(+) (11)	POPTR_1895s00200 (8)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.223555.1.S1_a_at	A	A1TS	POPTR_0003s14930	POPTR_0003s14930 (11)	scaffold_3:14851556-14851843(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223556.1.S1_at	A	A1TS	POPTR_0002s01360	POPTR_0002s01360 (11)	scaffold_2:715835-716044(+) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43980.1	"carrier, putative"	Medtr4g096070.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223557.1.S1_x_at	A	A1TS	POPTR_0019s03030	POPTR_0019s03030 (9)	scaffold_1:8574594-8575247(-) (10)//scaffold_19:3006406-3007008(+) (9)//scaffold_6:19593940-19594593(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223558.1.S1_s_at	A	A1TS	POPTR_0001s41110	POPTR_0001s41110 (11)	scaffold_1:40766294-40766837(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os01g06920.1	"resistance protein SlVe1 precursor, putative, expressed"	Medtr7g008860.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.223559.1.S1_at	A	A1MS	POPTR_0011s13100	POPTR_0011s13100 (9)	scaffold_11:15797767-15798284(+) (11)//scaffold_11:15812207-15812661(+) (9)	NA	Q9LDQ3	Putative cysteine-rich receptor-like protein kinase 35	AT4G11530.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 34 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052620.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0005975|carbohydrate metabolic process	"GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.223560.1.S1_s_at	A	A1TS	POPTR_0011s13100	POPTR_0011s13100 (11)	scaffold_11:15797665-15797903(+) (11)//scaffold_11:15812042-15812280(+) (11)	NA	Q9LDQ3	Putative cysteine-rich receptor-like protein kinase 35	AT4G11530.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 34 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052620.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0005975|carbohydrate metabolic process	"GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.223562.1.S1_at	A	A1TS	POPTR_0017s07580	POPTR_0017s07580 (11)	scaffold_17:5899700-5900241(-) (11)	NA	Q94B59	"Pentatricopeptide repeat-containing protein At5g09450, mitochondrial"	AT5G09450.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g37720.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223562.1.S1_s_at	A	A1TS	POPTR_0017s07580	POPTR_0017s07580 (11)	scaffold_17:5899549-5899668(-) (11)	NA	Q94B59	"Pentatricopeptide repeat-containing protein At5g09450, mitochondrial"	AT5G09450.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g37720.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223564.1.S1_x_at	A	A1MS	POPTR_0031s00240	POPTR_0031s00240 (9)	scaffold_31:49842-50303(+) (9)	POPTR_0019s00440 (8)	NA	NA	AT5G08450.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). 	LOC_Os07g29450.1	expressed protein	Medtr7g035190.1	Histone deacetylation protein Rxt3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223568.1.S1_at	A	A1TS	POPTR_0005s26350	POPTR_0005s26350 (9)	scaffold_5:24413612-24413978(-) (9)	NA	Q2HJG5	Vacuolar protein sorting-associated protein 35	AT1G75850.1	VPS35 homolog B 	LOC_Os03g58700.1	"vacuolar protein sorting-associated protein 35, putative, expressed"	Medtr1g031540.1	Vacuolar protein sorting-associated protein 35 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22357.1.S1_s_at	A	A1TS	POPTR_0010s21140	POPTR_0010s21140 (11)	scaffold_10:18548140-18548331(+) (11)	NA	NA	NA	AT3G55420.1	unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g38470.2	expressed protein	Medtr7g027080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223571.1.S1_s_at	A	A1TS	POPTR_0011s05130	POPTR_0011s05130 (11)	scaffold_11:5033318-5034379(-) (11)	NA	Q6VBB2	Heat stress transcription factor A-2b	AT5G16820.2	heat shock factor 3 	LOC_Os07g08140.1	"heat stress transcription factor, putative, expressed"	AC233659_20.1	"Heat shock factor (HSF)-type, DNA-binding AC233659.1 90576-91538 H EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.223572.1.S1_a_at	A	A1TA	POPTR_0001s24270	POPTR_0001s24270 (11)	scaffold_1:23611962-23612133(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223574.1.S1_at	A	A1TS	POPTR_0003s15010	POPTR_0003s15010 (11)	scaffold_3:14908868-14909674(+) (11)	NA	Q8L6Y4	Polycomb group protein EMBRYONIC FLOWER 2	AT5G51230.1	VEFS-Box of polycomb protein 	LOC_Os09g13630.1	"ZOS9-03 - C2H2 zinc finger protein, expressed"	Medtr5g013280.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223577.1.S1_at	A	A1TS	POPTR_0008s02320	POPTR_0008s02320 (11)	scaffold_8:1112152-1112426(+) (11)	NA	NA	NA	AT5G04680.1	Ankyrin repeat family protein 	NA	NA	Medtr5g028300.1	"ankyrin repeat family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223580.1.S1_at	A	A1TS	POPTR_0012s01480	POPTR_0012s01480 (11)	scaffold_12:1109919-1110753(+) (11)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223585.1.S1_s_at	A	A1TS	POPTR_0005s03780	POPTR_0005s03780 (11)	scaffold_5:2524449-2524870(+) (11)	POPTR_0258s00200 (6)	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os04g46300.1	"disease resistance protein RPM1, putative, expressed"	Medtr3g015730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223586.1.S1_at	A	A3TS	POPTR_0012s09160	POPTR_0012s09160 (11)//POPTR_2285s00200 (10)//POPTR_0357s00220 (10)	scaffold_12:10225213-10225561(+) (11)//scaffold_2285:3010-3281(+) (10)//scaffold_357:18534-18805(+) (10)	NA	P24465	Cytochrome P450 71A1	AT3G48280.1	"cytochrome P450, family 71, subfamily A, polypeptide 25 "	LOC_Os12g16720.1	"cytochrome P450 71A1, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.223593.1.S1_at	A	A1TS	POPTR_0015s05210	POPTR_0015s05210 (11)	scaffold_15:5575284-5575601(+) (11)	NA	NA	NA	AT1G14685.1	basic pentacysteine 2 	LOC_Os10g02584.3	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223595.1.S1_s_at	A	A1TS	POPTR_0011s15910	POPTR_0011s15910 (10)	scaffold_11:17924468-17924884(+) (10)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.223599.1.S1_at	A	A1TS	POPTR_0563s00195	POPTR_0563s00195 (11)	scaffold_563:2691-3065(+) (11)	NA	NA	NA	AT4G31140.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g27980.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223604.1.S1_at	A	A1MS	POPTR_0007s09210	POPTR_0007s09210 (11)	scaffold_7:8514767-8514848(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223604.1.S1_s_at	A	A1TS	POPTR_0007s09210	POPTR_0007s09210 (11)	scaffold_7:8514516-8514767(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223607.1.S1_at	A	A1TS	POPTR_0001s26660	POPTR_0001s26660 (11)	scaffold_1:25649738-25650070(-) (11)	NA	NA	NA	AT2G28490.1	RmlC-like cupins superfamily protein 	NA	NA	Medtr2g111160.1	"Cupin, RmlC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223610.1.S1_at	A	A1TS	POPTR_0007s02240	POPTR_0007s02240 (11)	scaffold_7:1338800-1339027(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223613.1.S1_s_at	A	A1MS	POPTR_0015s03790	POPTR_0015s03790 (11)	scaffold_15:3677542-3677699(-) (11)	NA	NA	NA	AT1G67060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). 	LOC_Os02g12870.1	expressed protein	Medtr7g093340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223614.1.S1_at	A	A1TS	POPTR_0011s06640	POPTR_0011s06640 (9)	scaffold_11:6523213-6523296(-) (10)//scaffold_11:7201050-7201873(-) (9)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.223614.1.S1_x_at	A	A1TS	POPTR_0011s06640	POPTR_0011s06640 (9)	scaffold_11:6523213-6523296(-) (9)//scaffold_11:7200833-7201873(-) (9)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.223618.1.S1_s_at	A	A1TS	POPTR_0012s01130	POPTR_0012s01130 (11)	scaffold_12:784024-784327(-) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr2g008380.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223619.1.S1_at	A	A1TS	POPTR_0012s01120	POPTR_0012s01120 (11)	scaffold_12:777021-777558(-) (11)	POPTR_0015s05960 (8)	Q38953	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G26560.1	"ATP-dependent RNA helicase, putative "	LOC_Os02g19860.1	"pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed"	Medtr1g143710.1	"Helicase, C-terminal; ATP-dependent helicase HrpB; Nucleic acid-binding, OB-fold, subgroup; "	NA	GO:0003723|RNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.223621.1.S1_s_at	A	A1TS	POPTR_0007s01640	POPTR_0007s01640 (11)	scaffold_7:939337-939871(+) (11)	NA	NA	NA	AT2G43465.1	RNA-binding ASCH domain protein 	LOC_Os11g16420.1	"protein of unknown function containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223622.1.S1_at	A	A1TS	POPTR_0014s18950	POPTR_0014s18950 (11)	scaffold_14:16561853-16562265(-) (11)	NA	Q9SRT3	Probable xyloglucan glycosyltransferase 6	AT3G07330.1	Cellulose-synthase-like C6 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr8g012660.1	"Glycosyl transferase, family 2; Inorganic pyrophosphatase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223629.1.S1_at	A	A1MS	POPTR_0118s00220	POPTR_0118s00220 (11)	scaffold_118:35182-35334(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223632.1.S1_s_at	A	A2TS	POPTR_0007s13400	POPTR_0007s13400 (11)//POPTR_0337s00210 (11)	scaffold_337:9431-10032(+) (11)//scaffold_7:13506058-13506661(-) (11)	NA	Q2HJ56	Periodic tryptophan protein 1 homolog	AT4G18905.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g69970.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g105580.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223633.1.S1_at	A	A2TS	POPTR_0629s00200	POPTR_0629s00200 (11)//POPTR_0906s00210 (11)	scaffold_1851:3231-3274(-) (11)//scaffold_3:19419532-19419574(+) (10)//scaffold_629:911-954(-) (11)//scaffold_906:4010-4053(+) (11)	POPTR_0003s21150 (6)	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.2	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity"	NA
PtpAffx.223633.1.S1_x_at	A	A2TS	POPTR_0629s00200	POPTR_0629s00200 (11)//POPTR_0906s00210 (10)	scaffold_1851:3115-3291(-) (10)//scaffold_3:19419532-19419690(+) (9)//scaffold_629:795-971(-) (11)//scaffold_906:3993-4169(+) (10)	POPTR_0003s21150 (7)	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.2	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity"	NA
PtpAffx.223634.1.S1_x_at	A	A1TS	POPTR_0062s00260	POPTR_0062s00260 (11)	scaffold_62:105068-105408(+) (11)	POPTR_0011s00980 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223635.1.S1_s_at	A	A2TS	POPTR_0016s03930	POPTR_0016s03930 (11)//POPTR_1242s00200 (11)	scaffold_1242:2199-2492(+) (11)//scaffold_16:2196753-2197046(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223638.1.S1_x_at	A	A1TS	POPTR_0008s12990	POPTR_0008s12990 (11)	scaffold_8:8476749-8477337(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223640.1.S1_s_at	A	A1TS	POPTR_0001s07220	POPTR_0001s07220 (11)	scaffold_1:5462544-5462910(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223642.1.S1_x_at	A	A1TS	POPTR_0005s26060	POPTR_0005s26060 (9)	scaffold_10:1968133-1968431(-) (10)//scaffold_5:24195335-24195639(-) (10)//scaffold_670:10162-10466(+) (11)//scaffold_8:15982790-15983000(+) (9)//scaffold_9:4917666-4917970(-) (10)	NA	NA	NA	AT5G41220.1	glutathione S-transferase THETA 3 	LOC_Os06g42890.1	"DNA binding protein, putative"	Medtr4g114770.1	"Homeodomain-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223647.1.S1_at	A	A1TS	POPTR_0151s00200	POPTR_0151s00200 (11)	scaffold_151:2049-2430(+) (11)	POPTR_0013s14590 (8)	O64477	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	AT2G19130.1	S-locus lectin protein kinase family protein 	LOC_Os07g36780.1	"S-domain receptor-like protein kinase, putative, expressed"	Medtr2g103160.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223648.1.S1_at	A	A1MS	POPTR_0001s20990	POPTR_0001s20990 (9)	scaffold_1:19214493-19215304(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223649.1.S1_at	A	A1MS	POPTR_0001s20970	POPTR_0001s20970 (9)	scaffold_1:19205694-19206525(+) (11)	NA	Q99PV0	Pre-mRNA-processing-splicing factor 8	AT1G80070.1	Pre-mRNA-processing-splicing factor 	LOC_Os06g07080.1	"pre-mRNA-processing-splicing factor 8, putative, expressed"	Medtr2g126650.1	"Mov34/MPN/PAD-1; PRO8NT; PROCN; PRO, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223650.1.S1_at	A	A1TS	POPTR_0001s20960	POPTR_0001s20960 (11)	scaffold_1:19200084-19200983(-) (11)	NA	NA	NA	AT1G15320.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223651.1.S1_at	A	A1TS	POPTR_0001s20950	POPTR_0001s20950 (11)	scaffold_1:19194974-19196283(-) (11)	NA	NA	NA	AT1G80030.2	Molecular chaperone Hsp40/DnaJ family protein 	NA	NA	Medtr2g126720.1	Chaperone DnaJ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223652.1.S1_at	A	A1TS	POPTR_0001s20940	POPTR_0001s20940 (10)	scaffold_1:19192333-19192846(-) (11)	NA	Q9SSD1	Protein TOO MANY MOUTHS	AT1G80080.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g43440.1	"TOO MANY MOUTHS precursor, putative"	Medtr2g126610.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.223653.1.S1_at	A	A1TS	POPTR_0001s20880	POPTR_0001s20880 (11)	scaffold_1:19119041-19119564(+) (11)	NA	Q9SSQ4	Protein FAR1-RELATED SEQUENCE 6	AT1G52520.1	FAR1-related sequence 6 	LOC_Os02g39540.1	"transposon protein, putative, unclassified, expressed"	Medtr2g034270.1	"FAR1; Heavy metal transport/detoxification protein; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.223654.1.S1_at	A	A1TS	POPTR_0001s20840	POPTR_0001s20840 (11)	scaffold_1:19071028-19072392(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g27520.1	"retrotransposon protein, putative, unclassified"	AC135504_4.1	"gag-pol polyprotein, related AC135504.61 17375-18058 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223660.1.S1_at	A	A1TS	POPTR_0001s20700	POPTR_0001s20700 (11)	scaffold_1:18775489-18776234(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223661.1.S1_at	A	A1TS	POPTR_0001s20680	POPTR_0001s20680 (11)	scaffold_1:18755784-18756121(+) (11)	NA	P93422	Histidyl-tRNA synthetase	AT3G02760.1	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os05g05840.1	"tRNA synthetase class II core domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223662.1.S1_at	A	A1TS	POPTR_0001s20670	POPTR_0001s20670 (11)	scaffold_1:18734140-18737051(-) (11)	NA	P28724	NADP-specific glutamate dehydrogenase	AT1G51720.1	Amino acid dehydrogenase family protein 	LOC_Os01g37760.1	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.223663.1.S1_at	A	A1TS	POPTR_0001s20650	POPTR_0001s20650 (11)	scaffold_1:18657872-18658939(-) (11)	NA	P48978	Polygalacturonase	AT1G80140.1	Pectin lyase-like superfamily protein 	LOC_Os05g46510.1	"polygalacturonase, putative, expressed"	Medtr2g071100.1	"Pectolytic enzyme, Pectin lyase fold "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.223664.1.S1_at	A	A1MS	POPTR_0001s20620	POPTR_0001s20620 (9)	scaffold_1:18609068-18609885(-) (10)	NA	NA	NA	AT4G33090.1	aminopeptidase M1 	LOC_Os08g30810.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr8g021840.1	"Peptidase M1, membrane alanine aminopeptidase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223665.1.S1_at	A	A1TS	POPTR_0001s20610	POPTR_0001s20610 (11)	scaffold_1:18605632-18606137(+) (11)	NA	NA	NA	AT1G72790.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g120690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223666.1.S1_at	A	A1TS	POPTR_0001s20600	POPTR_0001s20600 (11)	scaffold_1:18601059-18601410(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223668.1.S1_at	A	A1TS	POPTR_0001s20560	POPTR_0001s20560 (10)	scaffold_1:18546743-18547308(-) (11)	NA	Q8S8S7	U-box domain-containing protein 34	AT5G12000.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os02g12660.1	"protein kinase domain containing protein, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223669.1.S1_at	A	A1TS	POPTR_0001s20400	POPTR_0001s20400 (11)	scaffold_1:18341564-18342035(-) (11)	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.2	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os02g13110.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223670.1.S1_at	A	A1TS	POPTR_0001s20380	POPTR_0001s20380 (9)	scaffold_1:18278892-18279282(-) (10)	NA	NA	NA	AT1G72670.1	IQ-domain 8 	LOC_Os01g09790.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g139750.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223672.1.S1_at	A	A1TS	POPTR_0001s20360	POPTR_0001s20360 (11)	scaffold_1:18164891-18165379(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g45440.1	"retrotransposon protein, putative, unclassified"	Medtr5g048410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223673.1.S1_at	A	A1TS	POPTR_0001s20340	POPTR_0001s20340 (11)	scaffold_1:18106464-18107816(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223675.1.S1_at	A	A1TS	POPTR_0001s20330	POPTR_0001s20330 (11)	scaffold_1:18061448-18062085(+) (11)	NA	NA	NA	AT3G13780.1	SMAD/FHA domain-containing protein  	LOC_Os06g36940.1	expressed protein	Medtr2g120970.1	SMAD/FHA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223676.1.S1_at	A	A1TS	POPTR_0001s20320	POPTR_0001s20320 (11)	scaffold_1:18056057-18058359(-) (11)	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.223677.1.S1_at	A	A1TS	POPTR_0001s20310	POPTR_0001s20310 (9)	scaffold_1:17990846-17991096(-) (11)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT1G17640.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g12850.1	"RNA recognition motif containing protein, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.223682.1.S1_s_at	A	A1TS	POPTR_0004s18540	POPTR_0004s18540 (11)	scaffold_4:18397018-18397263(+) (11)	NA	Q9FKS4	Serine/threonine-protein kinase ATR	AT5G40820.1	Ataxia telangiectasia-mutated and RAD3-related 	LOC_Os06g50910.3	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr1g143100.1	Protein kinase-like; UME 	NA	GO:0004674|protein serine/threonine kinase activity	NA
PtpAffx.223688.1.S1_at	A	A1TS	POPTR_0007s02320	POPTR_0007s02320 (11)	scaffold_7:1370029-1371127(+) (11)	NA	NA	NA	AT5G49150.1	gamete expressed 2 	LOC_Os09g25650.1	"GEX2, putative, expressed"	Medtr5g020060.1	Immunoglobulin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223689.1.S1_at	A	A1TS	POPTR_0007s02300	POPTR_0007s02300 (11)	scaffold_7:1355940-1362274(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g043710.1	"membrane located receptor-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223693.1.S1_at	A	A1TS	POPTR_0007s07560	POPTR_0007s07560 (10)	scaffold_7:5923826-5923894(+) (10)	NA	NA	NA	AT3G19920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits to 217 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g009020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223694.1.S1_at	A	A1TS	POPTR_0007s07570	POPTR_0007s07570 (11)	scaffold_462:3712-4450(+) (9)//scaffold_7:5928099-5928883(+) (11)	NA	NA	NA	AT3G14067.1	Subtilase family protein 	NA	NA	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223696.1.S1_at	A	A1TS	POPTR_0005s03090	POPTR_0005s03090 (11)	scaffold_5:2029145-2029699(-) (11)	NA	NA	NA	AT4G36150.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223696.1.S1_x_at	A	A1TS	POPTR_0005s03090	POPTR_0005s03090 (11)	scaffold_5:2029145-2029699(-) (11)	NA	NA	NA	AT4G36150.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223704.1.S1_at	A	A1TS	POPTR_0016s05610	POPTR_0016s05610 (11)	scaffold_16:3536665-3537436(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223705.1.S1_x_at	A	A1TS	POPTR_0014s10880	POPTR_0014s10880 (9)	scaffold_14:8125057-8125791(-) (9)	NA	Q9FWX7	ABC transporter B family member 11	AT1G02520.1	P-glycoprotein 11 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.223707.1.S1_s_at	A	A1TS	POPTR_0011s02220	POPTR_0011s02220 (11)	scaffold_11:1946537-1946663(+) (11)	NA	Q14FB0	"NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic"	ATCG01010.1	"NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein "	LOC_Os10g21418.1	"NADPH-dependent oxidoreductase, putative"	Medtr4g022870.1	"NADH-ubiquinone oxidoreductase, chain 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223713.1.S1_s_at	A	A3TS	POPTR_0018s13500	POPTR_0018s13510 (11)//POPTR_0018s13500 (11)//POPTR_0018s13460 (10)	scaffold_18:13758605-13760208(+) (11)//scaffold_18:13784513-13784848(+) (10)//scaffold_18:13813307-13813643(+) (11)//scaffold_18:13827719-13828055(+) (11)//scaffold_2193:1103-2815(+) (11)	POPTR_0018s13430 (7)//POPTR_2193s00200 (7)	P46573	"Protein kinase APK1B, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os06g51170.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g130140.2	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223719.1.S1_s_at	A	A4TS	POPTR_0019s13740	POPTR_0063s00270 (11)//POPTR_0019s13740 (11)//POPTR_0019s13840 (11)//POPTR_0045s00240 (10)	scaffold_19:14601750-14601953(-) (11)//scaffold_19:14687140-14687343(-) (11)//scaffold_45:95696-95899(-) (11)//scaffold_63:71679-71882(-) (11)	NA	NA	NA	AT1G06330.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g55320.1	heavy metal-associated domain containing protein	Medtr3g101130.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.223720.1.S1_s_at	A	A1TS	POPTR_0001s15610	POPTR_0001s15610 (11)	scaffold_1:12456710-12456864(-) (11)	NA	O15457	MutS protein homolog 4	AT4G17380.1	MUTS-like protein 4 	LOC_Os07g30240.1	mutS family domain IV containing protein	Medtr5g012980.1	MutS 1 protein 	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.223722.1.S1_x_at	A	A1TS	POPTR_0015s15080	POPTR_0015s15080 (9)	scaffold_15:14452681-14453655(+) (11)	POPTR_0113s00210 (6)	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223727.1.S1_s_at	A	A1TS	POPTR_0009s09750	POPTR_0009s09750 (11)	scaffold_9:8550033-8550277(-) (11)	NA	NA	NA	AT2G15220.1	Plant basic secretory protein (BSP) family protein 	LOC_Os10g34920.1	"secretory protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223733.1.S1_x_at	A	A1TS	POPTR_0028s00410	POPTR_0028s00410 (11)	scaffold_28:198775-198890(+) (11)	NA	P0CC93	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr1g108390.1	NADH/Ubiquinone/plastoquinone (complex I) 	GO:0042773|ATP synthesis coupled electron transport	GO:0008137|NADH dehydrogenase (ubiquinone) activity	NA
PtpAffx.223736.1.S1_s_at	A	A8TS	POPTR_0007s06260	POPTR_0007s06390 (11)//POPTR_0007s06400 (11)//POPTR_0007s06410 (11)//POPTR_0007s06370 (11)//POPTR_0007s06360 (11)//POPTR_0007s06260 (11)//POPTR_0007s06300 (10)//POPTR_2998s00200 (10)	scaffold_2998:1205-1251(+) (10)//scaffold_7:4415895-4416057(+) (11)//scaffold_7:4453116-4453275(+) (11)//scaffold_7:4559571-4559733(+) (11)//scaffold_7:4571223-4571385(+) (11)//scaffold_7:4701454-4701616(+) (11)//scaffold_7:4721828-4721990(+) (11)//scaffold_7:4739780-4739942(+) (11)	NA	P24465	Cytochrome P450 71A1	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os09g26970.1	"retrotransposon protein, putative, unclassified"	Medtr2g078060.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.223737.1.S1_at	A	A1TS	POPTR_0004s04880	POPTR_0004s04880 (11)	scaffold_4:3645482-3645672(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT1G28440.1	HAESA-like 1 	LOC_Os01g13800.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr2g018130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223745.1.S1_at	A	A1TS	POPTR_0008s14220	POPTR_0008s14220 (9)	scaffold_8:9401562-9401837(-) (9)	NA	Q9FYJ6	Transcription factor bHLH111	AT1G31050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g28890.1	"ethylene-responsive protein related, putative, expressed"	Medtr2g011150.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223747.1.S1_at	A	A1TS	POPTR_0016s05920	POPTR_0016s05920 (11)	scaffold_16:3864429-3864700(+) (11)	POPTR_0149s00230 (8)	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G38180.1	FAR1-related sequence 5 	LOC_Os06g07010.1	"transposon protein, putative, unclassified, expressed"	Medtr5g106890.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.223761.1.S1_s_at	A	A1TS	POPTR_0016s01420	POPTR_0016s01420 (11)	scaffold_16:642247-642540(-) (11)	NA	Q6Z8C8	Cyclin-dependent kinase F-4	AT4G19110.2	Protein kinase superfamily protein 	LOC_Os06g02550.2	"CPuORF21 - conserved peptide uORF-containing transcript, expressed"	Medtr5g027190.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223763.1.S1_x_at	A	A1MS	POPTR_0004s12780	POPTR_0004s12780 (10)	scaffold_4:12058805-12059007(+) (10)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223764.1.S1_at	A	A1TS	POPTR_0018s13560	POPTR_0018s13560 (10)	scaffold_18:13848402-13849390(-) (10)	NA	P43293	Probable serine/threonine-protein kinase NAK	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223773.1.S1_at	A	A1TS	POPTR_0018s02980	POPTR_0018s02980 (10)	scaffold_11:1408703-1408855(+) (10)//scaffold_11:1434236-1434388(+) (10)//scaffold_11:1495505-1495792(+) (11)//scaffold_11:1599887-1600039(+) (10)//scaffold_18:2590083-2590370(-) (11)//scaffold_2359:2122-2274(-) (10)//scaffold_576:7690-7978(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223773.1.S1_x_at	A	A1TS	POPTR_0018s02980	POPTR_0018s02980 (10)	scaffold_11:1408703-1408877(+) (10)//scaffold_11:1434236-1434410(+) (10)//scaffold_11:1495505-1495792(+) (11)//scaffold_11:1599887-1600061(+) (10)//scaffold_18:2590083-2590370(-) (11)//scaffold_2359:2100-2274(-) (10)//scaffold_576:7690-7978(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223774.1.S1_at	A	A1TS	POPTR_0004s01360	POPTR_0004s01360 (11)	scaffold_4:751903-752180(+) (11)	NA	NA	NA	AT1G11740.1	ankyrin repeat family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223776.1.S1_at	A	A1TS	POPTR_0009s08680	POPTR_0009s08680 (9)	scaffold_9:7868561-7868811(+) (11)	NA	P11670	Basic form of pathogenesis-related protein 1	AT2G14580.1	basic pathogenesis-related protein 1 	NA	NA	Medtr2g014120.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223777.1.S1_at	A	A1TS	POPTR_0004s18900	POPTR_0004s18900 (9)	scaffold_4:18639555-18639893(+) (11)	NA	P29031	Acidic endochitinase WIN6.2B	AT2G17070.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os03g30470.1	"CHIT4 - Chitinase family protein precursor, expressed"	Medtr4g096120.1	Arabidopsis conserved protein 	NA	GO:0008061|chitin binding	NA
PtpAffx.223778.1.S1_s_at	A	A1TS	POPTR_0004s18910	POPTR_0004s18910 (11)	scaffold_4:18641445-18642146(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223780.1.S1_s_at	A	A1TS	POPTR_0014s18045	POPTR_0014s18045 (11)	scaffold_14:14679802-14680137(-) (11)	NA	P54235	"Glucose-6-phosphate isomerase, cytosolic 1"	NA	NA	NA	NA	Medtr6g009990.1	Phosphoglucose isomerase (PGI) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223781.1.S1_s_at	A	A2TS	POPTR_0019s09800	POPTR_0019s09870 (11)//POPTR_0019s09800 (11)	scaffold_19:11406234-11406302(+) (11)//scaffold_19:11459662-11459730(+) (11)//scaffold_19:11488262-11488330(+) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223784.1.S1_x_at	A	A1MS	POPTR_0001s36460	POPTR_0001s36460 (11)	scaffold_1:35079660-35079921(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	NA	NA	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223787.1.S1_s_at	A	A1TS	POPTR_0017s06040	POPTR_0017s06040 (11)	scaffold_17:4685632-4685674(+) (11)	NA	Q9SIQ7	Calcium-dependent protein kinase 24	AT2G31500.1	calcium-dependent protein kinase 24 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g031920.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223788.1.S1_s_at	A	A2TS	POPTR_0001s46830	POPTR_0001s46830 (11)//POPTR_0001s46840 (11)	scaffold_1:47220697-47220976(+) (11)//scaffold_1:47223769-47224048(+) (11)	NA	Q6K5P8	Putative germin-like protein 2-3	AT5G39190.1	germin-like protein 2 	LOC_Os02g29020.1	Cupin domain containing protein	Medtr6g005250.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.223789.1.S1_s_at	A	A1TS	POPTR_0006s14910	POPTR_0006s14910 (11)	scaffold_6:12402837-12403155(-) (11)	NA	Q42484	Disease resistance protein RPS2	AT4G26090.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223790.1.S1_at	A	A1TS	POPTR_0003s02810	POPTR_0003s02810 (11)	scaffold_3:2921896-2922131(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223790.1.S1_x_at	A	A1TS	POPTR_0003s02810	POPTR_0003s02810 (11)	scaffold_3:2921896-2922131(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223794.1.S1_at	A	A2TS	POPTR_0017s07890	POPTR_0017s07890 (11)//POPTR_0017s07930 (11)	scaffold_17:6238509-6238705(+) (11)//scaffold_17:6302978-6303174(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223799.1.S1_s_at	A	A2TS	POPTR_0011s12950	POPTR_0011s12990 (11)//POPTR_0011s12950 (11)	scaffold_11:15654459-15654825(+) (11)//scaffold_11:15705713-15706079(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020990.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223802.1.S1_at	A	A1TS	POPTR_0017s09920	POPTR_0017s09920 (11)	scaffold_17:8683392-8684605(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223802.1.S1_x_at	A	A1TS	POPTR_0017s09920	POPTR_0017s09920 (11)	scaffold_17:8683168-8684605(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223809.1.S1_s_at	A	A2TS	POPTR_0004s24020	POPTR_0004s24020 (11)//POPTR_0018s00260 (11)	scaffold_18:75695-76078(-) (11)//scaffold_4:22684893-22685279(-) (11)	POPTR_0004s24060 (8)	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223810.1.S1_x_at	A	A2TS	POPTR_0060s00260	POPTR_0060s00290 (11)//POPTR_0060s00260 (11)	scaffold_60:61118-61675(-) (11)//scaffold_60:97104-97667(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223812.1.S1_at	A	A1TS	POPTR_0001s40670	POPTR_0001s40670 (11)	scaffold_1:40254108-40254417(-) (11)	NA	P04694	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os02g20360.2	"tyrosine aminotransferase, putative, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223826.1.S1_at	A	A1TS	POPTR_1687s00200	POPTR_1687s00200 (11)	scaffold_1687:2613-2896(-) (11)//scaffold_9:12806619-12806903(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223831.1.S1_s_at	A	A1TS	POPTR_0017s09930	POPTR_0017s09930 (11)	scaffold_17:8686864-8690215(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223832.1.S1_at	A	A1TS	POPTR_0013s07200	POPTR_0013s07200 (11)	scaffold_13:5901764-5902235(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223834.1.S1_s_at	A	A1TA	POPTR_0035s00280	POPTR_0035s00280 (11)	scaffold_1:45495710-45496077(+) (11)//scaffold_22:589573-589940(-) (11)//scaffold_35:131663-132031(-) (11)//scaffold_35:143833-144201(-) (11)//scaffold_6:815818-816185(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223835.1.S1_s_at	A	A1TS	POPTR_0003s02510	POPTR_0003s02510 (9)	scaffold_3:2595581-2596505(+) (9)	NA	Q5T1Q4	Solute carrier family 35 member F1	AT3G59310.1	Eukaryotic protein of unknown function (DUF914) 	LOC_Os05g37200.1	"solute carrier family 35 member F2, putative, expressed"	Medtr7g127060.1	"Protein of unknown function DUF914, eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.223837.1.S1_at	A	A1TS	POPTR_0580s00210	POPTR_0580s00210 (9)	scaffold_580:8562-12874(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223840.1.S1_at	A	A1TS	POPTR_0012s12400	POPTR_0012s12400 (11)	scaffold_12:12706981-12707073(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223842.1.S1_at	A	A1TS	POPTR_0005s16170	POPTR_0005s16170 (11)	scaffold_5:12832747-12833115(-) (11)//scaffold_805:6609-6755(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223843.1.S1_s_at	A	A2TS	POPTR_0013s12350	POPTR_0636s00200 (11)//POPTR_0013s12350 (11)	scaffold_13:12974257-12974924(-) (11)//scaffold_636:10253-10921(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223846.1.S1_at	A	A1TS	POPTR_0155s00220	POPTR_0155s00220 (11)	scaffold_155:20232-21652(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223848.1.S1_at	A	A1TS	POPTR_0018s06250	POPTR_0018s06250 (11)	scaffold_18:5977953-5978051(+) (11)	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT3G24330.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g36940.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr6g030630.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.223849.1.S1_s_at	A	A2TS	POPTR_0017s03660	POPTR_0017s03800 (11)//POPTR_0017s03660 (11)	scaffold_17:2714567-2714642(+) (11)//scaffold_17:2805517-2805592(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223850.1.S1_at	A	A2TS	POPTR_0019s02400	POPTR_0019s02400 (10)//POPTR_0019s02360 (9)	scaffold_19:2190637-2191545(-) (10)//scaffold_19:2204813-2215044(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223852.1.S1_at	A	A1TS	POPTR_0618s00200	POPTR_0618s00200 (11)	scaffold_618:2060-3622(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223856.1.S1_s_at	A	A1TS	POPTR_0019s07590	POPTR_0019s07590 (11)	scaffold_19:8663640-8663893(+) (11)	NA	O04647	Pentatricopeptide repeat-containing protein At5g27270	AT5G27270.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g02120.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g089510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223857.1.S1_at	A	A1TS	POPTR_0017s04980	POPTR_0017s04980 (11)	scaffold_17:3825908-3826186(-) (11)	NA	O22864	Protein NLP8	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223859.1.S1_at	A	A1TS	POPTR_0025s00260	POPTR_0025s00260 (11)	scaffold_25:38989-40831(+) (11)	NA	NA	NA	AT1G58190.2	receptor like protein 9 	LOC_Os11g07260.1	expressed protein	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.223860.1.S1_at	A	A1TS	POPTR_0180s00200	POPTR_0180s00200 (11)	scaffold_180:27833-27943(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223861.1.S1_at	A	A1TS	POPTR_0013s02140	POPTR_0013s02140 (11)	scaffold_13:1280493-1280839(-) (11)//scaffold_13:1285123-1285469(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223864.1.S1_at	A	A1TS	POPTR_0012s09100	POPTR_0012s09100 (11)	scaffold_12:10173468-10173664(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223864.1.S1_s_at	A	A1TS	POPTR_0012s09100	POPTR_0012s09100 (11)	scaffold_12:10173288-10173612(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223866.1.S1_at	A	A1MA	POPTR_0775s00200	POPTR_0775s00200 (10)	scaffold_775:3866-4419(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223869.1.S1_at	A	A1TS	POPTR_0014s04790	POPTR_0014s04790 (9)	scaffold_14:3687447-3694764(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223870.1.S1_x_at	A	A1MS	POPTR_0555s00200	POPTR_0555s00200 (10)	scaffold_555:4392-4642(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223874.1.S1_at	A	A1TS	POPTR_0183s00260	POPTR_0183s00260 (11)	scaffold_1:28401812-28402315(-) (11)//scaffold_183:30305-30808(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223878.1.S1_at	A	A1TS	POPTR_0019s00920	POPTR_0019s00920 (10)	scaffold_19:697993-698359(-) (10)	NA	Q40392	TMV resistance protein N	AT5G11250.1	Disease resistance protein (TIR-NBS-LRR class) 	NA	NA	Medtr7g088460.1	TIR; Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.223879.1.S1_at	A	A1TS	POPTR_0004s02120	POPTR_0004s02120 (11)	scaffold_4:1320938-1323399(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223882.1.S1_at	A	A1TS	POPTR_0006s02860	POPTR_0006s02860 (11)	scaffold_6:1811625-1813374(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223882.1.S1_x_at	A	A1TS	POPTR_0006s02860	POPTR_0006s02860 (11)	scaffold_6:1811626-1813374(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223885.1.S1_at	A	A1MS	POPTR_0007s07580	POPTR_0007s07580 (9)	scaffold_7:5932820-5933211(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.223887.1.S1_at	A	A1TS	POPTR_0003s18580	POPTR_0003s18580 (11)	scaffold_3:17611416-17612134(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223888.1.S1_at	A	A1TS	POPTR_0005s17930	POPTR_0005s17930 (11)	scaffold_5:15757731-15758813(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223889.1.S1_at	A	A1TS	POPTR_0005s14960	POPTR_0005s14960 (11)	scaffold_5:11801961-11818264(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223890.1.S1_at	A	A1TS	POPTR_0001s21465	POPTR_0001s21465 (11)	scaffold_1:19958188-19958726(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g40450.1	"retrotransposon protein, putative, unclassified"	Medtr8g044140.1	"Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223890.1.S1_x_at	A	A1TS	POPTR_0001s21465	POPTR_0001s21465 (11)	scaffold_1:19958130-19958726(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g40450.1	"retrotransposon protein, putative, unclassified"	Medtr8g044140.1	"Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223891.1.S1_at	A	A4TS	POPTR_0001s44830	POPTR_0001s44830 (11)//POPTR_0004s15690 (11)//POPTR_0019s11750 (11)//POPTR_0005s28430 (11)	scaffold_1:45222298-45222923(+) (11)//scaffold_19:12977840-12978467(-) (11)//scaffold_4:16272329-16272957(+) (11)//scaffold_5:25764256-25764880(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223891.1.S1_x_at	A	A4TS	POPTR_0019s11750	POPTR_0019s11750 (11)//POPTR_0001s44830 (10)//POPTR_0004s15690 (10)//POPTR_0005s28430 (10)	scaffold_1:45222298-45222918(+) (10)//scaffold_19:12977845-12978467(-) (11)//scaffold_4:16272329-16272952(+) (10)//scaffold_5:25764256-25764875(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223894.1.S1_at	A	A1TS	POPTR_0015s07090	POPTR_0015s07090 (9)	scaffold_15:8205614-8206426(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223904.1.S1_at	A	A1TS	POPTR_0004s17600	POPTR_0004s17600 (11)	scaffold_4:17739242-17740211(+) (11)	NA	NA	NA	AT4G38760.1	Protein of unknown function (DUF3414) 	LOC_Os10g06610.1	expressed protein	Medtr4g100780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223905.1.S1_at	A	A1TS	POPTR_0044s00260	POPTR_0044s00260 (11)	scaffold_44:102305-103208(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223909.1.S1_at	A	A1TS	POPTR_0005s00880	POPTR_0005s00880 (11)	scaffold_5:407567-408294(-) (11)	NA	Q9LRR5	Putative disease resistance protein At3g14460	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g021730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223913.1.S1_s_at	A	A1TS	POPTR_0017s09350	POPTR_0017s09350 (11)	scaffold_11:749876-750144(-) (11)//scaffold_17:7963362-7963630(+) (11)//scaffold_4:17523870-17524138(+) (11)//scaffold_8:12836216-12836484(+) (11)	POPTR_0013s08980 (7)	NA	NA	NA	NA	LOC_Os07g13350.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223914.1.S1_s_at	A	A1TS	POPTR_0011s12630	POPTR_0011s12630 (11)	scaffold_11:15326184-15326694(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.223926.1.S1_at	A	A1TS	POPTR_0007s10000	POPTR_0007s10000 (11)	scaffold_7:9588463-9589428(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223928.1.S1_at	A	A1MS	POPTR_0001s06780	POPTR_0001s06780 (10)	scaffold_1:5190559-5196839(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223928.1.S1_s_at	A	A1MS	POPTR_0001s06780	POPTR_0001s06780 (11)	scaffold_1:5196787-5197028(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223929.1.S1_at	A	A1TS	POPTR_0006s16600	POPTR_0006s16600 (10)	scaffold_6:14463603-14464124(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223932.1.S1_s_at	A	A1TS	POPTR_0002s04560	POPTR_0002s04560 (11)	scaffold_2:2842822-2843204(-) (11)	NA	Q941F1	"Phospholipase A1-Igamma1, chloroplastic"	AT1G06800.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g32380.1	"phospholipase, putative, expressed"	Medtr4g104700.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.223934.1.S1_s_at	A	A1TS	POPTR_0010s05665	POPTR_0010s05665 (11)	scaffold_10:7129739-7129957(+) (11)	NA	NA	NA	AT3G21000.1	Gag-Pol-related retrotransposon family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223935.1.S1_at	A	A1MA	POPTR_0002s14690	POPTR_0002s14690 (10)	scaffold_2:10917241-10917448(+) (10)	NA	NA	NA	AT2G45260.1	Plant protein of unknown function (DUF641) 	LOC_Os10g23220.2	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223937.1.S1_at	A	A1TS	POPTR_0025s00520	POPTR_0025s00520 (11)	scaffold_25:235027-235581(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223938.1.S1_at	A	A1TS	POPTR_0010s01970	POPTR_0010s01970 (11)	scaffold_10:2183371-2183715(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223940.1.S1_at	A	A1TS	POPTR_0004s02565	POPTR_0004s02565 (11)	scaffold_4:1705713-1706752(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223947.1.S1_at	A	A1TS	POPTR_0011s16850	POPTR_0011s16850 (11)	scaffold_11:18597043-18598574(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os06g06380.1	"NBS-LRR type disease resistance protein, putative, expressed"	Medtr3g015730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223948.1.S1_at	A	A1TS	POPTR_0979s00200	POPTR_0979s00200 (11)	scaffold_1:4701965-4702025(+) (11)//scaffold_979:6276-6336(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.223948.1.S1_s_at	A	A2TS	POPTR_0979s00200	POPTR_0979s00200 (11)//POPTR_0001s06010 (10)	scaffold_1:4701872-4702233(+) (11)//scaffold_979:6085-6429(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.223949.1.S1_at	A	A1TS	POPTR_0012s02780	POPTR_0012s02780 (11)	scaffold_12:2289524-2289596(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223951.1.S1_at	A	A1TA	POPTR_0003s06380	POPTR_0003s06380 (11)	scaffold_3:7870557-7870905(-) (11)	NA	Q4VYC8	Nodulation-signaling pathway 1 protein	AT3G13840.1	GRAS family transcription factor 	LOC_Os03g29480.1	"nodulation-signaling pathway 1 protein, putative, expressed"	Medtr8g025000.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223953.1.S1_s_at	A	A1TS	POPTR_0010s18330	POPTR_0010s18330 (11)	scaffold_10:16611152-16611432(+) (11)//scaffold_10:16616859-16617139(+) (11)	NA	NA	NA	AT3G06130.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	AC233679_1.1	Heavy metal transport/detoxification protein AC233679.1 2787-4960 E EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.223957.1.S1_at	A	A1TS	POPTR_0107s00270	POPTR_0107s00270 (11)	scaffold_107:42432-49739(+) (11)	NA	O64477	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	AT2G19130.1	S-locus lectin protein kinase family protein 	LOC_Os01g66610.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g103080.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.223961.1.S1_at	A	A2TS	POPTR_0006s20570	POPTR_0006s20570 (11)//POPTR_0001s11060 (10)	scaffold_1:8573404-8574125(-) (10)//scaffold_6:19595062-19595783(+) (11)	POPTR_2158s00200 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223964.1.S1_at	A	A1TS	POPTR_0001s42420	POPTR_0001s42420 (11)	scaffold_1:42405164-42405447(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223966.1.S1_at	A	A1TS	POPTR_0019s13830	POPTR_0019s13830 (11)	scaffold_19:14683604-14684167(+) (11)	NA	NA	NA	AT4G03460.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr3g076350.1	"ankyrin repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223967.1.S1_at	A	A1TS	POPTR_0001s07090	POPTR_0001s07090 (11)	scaffold_1:5395419-5395785(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223969.1.S1_at	A	A1TS	POPTR_0005s15420	POPTR_0005s15420 (9)	scaffold_5:12103258-12103587(-) (10)	NA	Q9LF10	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT5G16180.1	ortholog of maize chloroplast splicing factor CRS1 	LOC_Os08g27150.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr2g121940.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.223970.1.S1_at	A	A1MS	POPTR_0019s07210	POPTR_0019s07210 (9)	scaffold_19:8138633-8139698(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223973.1.S1_at	A	A1TS	POPTR_0001s30700	POPTR_0001s30700 (11)	scaffold_1:29178294-29178621(+) (11)	NA	NA	NA	AT2G15220.1	Plant basic secretory protein (BSP) family protein 	LOC_Os10g34920.1	"secretory protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223979.1.S1_at	A	A1TS	POPTR_0001s46030	POPTR_0001s46030 (11)	scaffold_1:46529483-46529718(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g086950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223979.1.S1_s_at	A	A1TS	POPTR_0001s46030	POPTR_0001s46030 (11)	scaffold_1:46528985-46529479(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g086950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223980.1.S1_at	A	A1TS	POPTR_0009s12350	POPTR_0009s12350 (11)	scaffold_9:10082570-10083769(+) (11)	NA	A4IHD2	Helicase ARIP4	AT2G16390.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os07g25390.1	"DRD1, putative, expressed"	Medtr7g027270.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.223981.1.S1_s_at	A	A3TS	POPTR_0001s29000	POPTR_0001s29090 (11)//POPTR_0001s29000 (11)//POPTR_0001s29050 (11)	scaffold_1:27759485-27759810(-) (11)//scaffold_1:27788075-27788400(-) (11)//scaffold_1:27876693-27877018(-) (11)	POPTR_0001s29080 (8)	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223985.1.S1_at	A	A1TS	POPTR_0008s16210	POPTR_0008s16210 (11)	scaffold_8:10844949-10849649(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g007190.1	"Zinc finger, CCHC-type; Plus-3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223985.1.S1_s_at	A	A2TS	POPTR_0008s16210	POPTR_0008s16240 (11)//POPTR_0008s16210 (11)	scaffold_8:10849642-10849951(-) (11)//scaffold_8:10868182-10868491(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g007190.1	"Zinc finger, CCHC-type; Plus-3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223989.1.S1_at	A	A1MS	POPTR_0001s41010	POPTR_0001s41010 (9)	scaffold_1:40629158-40629253(-) (9)	NA	NA	NA	AT4G27500.1	proton pump interactor 1 	LOC_Os08g30060.2	"proton pump interactor, putative, expressed"	Medtr2g100530.1	"proton pump interactor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223995.1.S1_at	A	A1TS	POPTR_0019s07590	POPTR_0019s07590 (11)	scaffold_19:8667775-8667942(+) (11)	NA	O04647	Pentatricopeptide repeat-containing protein At5g27270	AT5G27270.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g02120.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g089510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224.1.S1_s_at	A	A1TS	POPTR_0021s00760	POPTR_0021s00760 (11)	scaffold_21:428922-429450(-) (11)	NA	NA	NA	AT1G11700.1	"Protein of unknown function, DUF584 "	LOC_Os01g64300.1	"DUF584 domain containing protein, putative, expressed"	Medtr8g146700.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224000.1.S1_at	A	A1TS	POPTR_0006s09370	POPTR_0006s09370 (10)	scaffold_6:6886189-6886547(-) (10)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G02010.1	RHO guanyl-nucleotide exchange factor 7 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.224001.1.S1_s_at	A	A3TS	POPTR_0008s14250	POPTR_0008s14250 (11)//POPTR_0008s14260 (11)//POPTR_0211s00210 (11)	scaffold_211:18204-18689(-) (11)//scaffold_8:9432555-9433040(+) (11)//scaffold_8:9461998-9462483(+) (11)	NA	Q8BV79	TPR and ankyrin repeat-containing protein 1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g51090.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr3g169640.1	"Helicase, superfamily 1, UvrD-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224007.1.S1_at	A	A1TS	POPTR_0001s01310	POPTR_0001s01310 (9)	scaffold_1:982611-983328(+) (9)	NA	NA	NA	NA	NA	LOC_Os06g02520.1	"interacting protein of DMI3, putative, expressed"	Medtr5g027010.1	"interacting protein of DMI3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224009.1.S1_x_at	A	A1TS	POPTR_0016s11393	POPTR_0016s11393 (11)	scaffold_10:4425788-4426259(+) (11)//scaffold_10:4438717-4439188(-) (11)//scaffold_10:4467586-4468057(+) (9)//scaffold_10:4584969-4585440(-) (9)//scaffold_10:4592926-4593397(+) (9)//scaffold_10:4889413-4889884(-) (11)//scaffold_11:10573618-10578952(-) (11)//scaffold_12:13021457-13021928(+) (9)//scaffold_13:11271790-11272261(-) (11)//scaffold_1445:1844-2266(+) (9)//scaffold_15:1845814-1846285(-) (11)//scaffold_15:2051650-2052192(+) (9)//scaffold_15:2093907-2094378(+) (11)//scaffold_15:2300999-2304544(+) (9)//scaffold_16:10220957-10221428(-) (11)//scaffold_17:9229595-9230048(-) (9)//scaffold_17:9470024-9470495(+) (11)//scaffold_24:366768-367239(+) (11)//scaffold_28:37091-37562(+) (11)//scaffold_5:10111531-10112002(+) (9)//scaffold_8:15754746-15755217(+) (11)//scaffold_85:54525-54996(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224010.1.S1_s_at	A	A1TS	POPTR_0008s21000	POPTR_0008s21000 (10)	scaffold_8:15055231-15055452(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224012.1.S1_at	A	A1TS	POPTR_0309s00220	POPTR_0309s00220 (11)	scaffold_309:7596-8036(-) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66940.1	protein kinase-related 	NA	NA	Medtr7g093700.1	"receptor serine/threonine kinase PR5K, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224014.1.S1_s_at	A	A1TS	POPTR_0016s03720	POPTR_0016s03720 (11)	scaffold_16:2071250-2072338(-) (11)	NA	P92976	Strictosidine synthase 3	AT2G41290.1	strictosidine synthase-like 2 	LOC_Os12g04424.1	"strictosidine synthase, putative, expressed"	Medtr7g107350.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.224016.1.S1_s_at	A	A1TS	POPTR_0005s19330	POPTR_0005s19330 (11)	scaffold_5:18071749-18072238(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224019.1.S1_at	A	A1TS	POPTR_0011s13110	POPTR_0011s13110 (10)	scaffold_1:10635501-10635834(-) (10)//scaffold_1:43659240-43659573(+) (10)//scaffold_11:15733478-15733811(+) (10)//scaffold_11:15824089-15824422(+) (10)//scaffold_3:19944062-19944395(-) (11)	NA	Q9LW83	G-type lectin S-receptor-like serine/threonine-protein kinase CES101	AT3G16030.1	lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052620.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22402.1.A1_at	A	A1TS	POPTR_0006s13620	POPTR_0006s13620 (11)	scaffold_6:10819094-10821276(-) (11)	NA	P96554	Uncharacterized membrane protein STKORF319	AT5G12130.1	integral membrane TerC family protein 	LOC_Os05g03000.2	"inner membrane protein alx, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.224020.1.S1_at	A	A1TS	POPTR_0009s11180	POPTR_0009s11180 (11)	scaffold_9:9381863-9382284(+) (11)	NA	NA	NA	AT4G31970.1	"cytochrome P450, family 82, subfamily C, polypeptide 2 "	NA	NA	Medtr6g009150.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224023.1.S1_s_at	A	A1MS	POPTR_0017s14580	POPTR_0017s14580 (11)	scaffold_17:13946996-13947507(-) (11)//scaffold_17:14582857-14583365(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g16430.1	"FHA domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224024.1.S1_at	A	A1TS	POPTR_0005s21120	POPTR_0005s21120 (11)	scaffold_5:20260635-20261202(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224025.1.S1_s_at	A	A1TS	POPTR_0008s21210	POPTR_0008s21210 (11)	scaffold_8:15407936-15408010(-) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224028.1.S1_x_at	A	A1TS	POPTR_0019s01050	POPTR_0019s01050 (11)	scaffold_19:805549-806051(+) (11)	POPTR_0019s01020 (8)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224031.1.S1_at	A	A1MS	POPTR_0001s47840	POPTR_0001s47840 (9)	scaffold_1:48248985-48249749(+) (9)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224033.1.S1_at	A	A1MS	POPTR_0015s15250	POPTR_0015s15250 (10)	scaffold_15:14568248-14568560(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224039.1.S1_at	A	A1TS	POPTR_0009s02800	POPTR_0009s02800 (11)	scaffold_9:3561314-3561772(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224040.1.S1_at	A	A1TS	POPTR_0006s08190	POPTR_0006s08190 (11)	scaffold_6:5960085-5960149(+) (11)	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr7g118180.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224040.1.S1_s_at	A	A1TS	POPTR_0006s08190	POPTR_0006s08190 (11)	scaffold_6:5960043-5960661(+) (11)	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr7g118180.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224041.1.S1_s_at	A	A1TS	POPTR_0002s00970	POPTR_0002s00970 (11)	scaffold_2:476258-477131(+) (11)	NA	Q3YK19	Fanconi anemia group J protein homolog	AT1G20720.1	RAD3-like DNA-binding helicase protein 	LOC_Os09g37920.1	"helicase, putative, expressed"	AC234703_2.1	"Xeroderma pigmentosum group D protein; ATP-dependent helicase, DEAH-box; ; AC234703.1 26378-15197 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004003|ATP-dependent DNA helicase activity	NA
PtpAffx.224042.1.S1_s_at	A	A2TS	POPTR_0019s00900	POPTR_0019s00900 (11)//POPTR_0019s00930 (11)	scaffold_19:687084-687519(-) (11)//scaffold_19:703286-703721(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g10550.1	"NBS-LRR disease resistance protein, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	NA	GO:0005515|protein binding	NA
PtpAffx.224044.1.S1_at	A	A1TS	POPTR_0017s06370	POPTR_0017s06370 (10)	scaffold_17:4889821-4890108(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224044.1.S1_s_at	A	A1TS	POPTR_0017s06370	POPTR_0017s06370 (11)	scaffold_17:4889764-4890280(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224045.1.S1_a_at	A	A1TS	POPTR_0002s18280	POPTR_0002s18280 (11)	scaffold_2:14256837-14256878(-) (11)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g44820.1	"no apical meristem protein, putative, expressed"	AC233657_5.1	No apical meristem (NAM) protein AC233657.1 22252-24463 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.224045.1.S1_at	A	A1TS	POPTR_0002s18280	POPTR_0002s18280 (11)	scaffold_2:14257073-14257340(-) (11)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g44820.1	"no apical meristem protein, putative, expressed"	AC233657_5.1	No apical meristem (NAM) protein AC233657.1 22252-24463 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.224045.1.S1_x_at	A	A1TS	POPTR_0002s18280	POPTR_0002s18280 (11)	scaffold_2:14256685-14257340(-) (11)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g44820.1	"no apical meristem protein, putative, expressed"	AC233657_5.1	No apical meristem (NAM) protein AC233657.1 22252-24463 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.224046.1.S1_at	A	A1TS	POPTR_0005s01040	POPTR_0005s01040 (11)	scaffold_5:552925-553506(+) (11)	NA	NA	NA	NA	NA	NA	NA	fpc265_22.1	"Helicase, C-terminal fpc265 101840-115910 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224047.1.S1_at	A	A1TS	POPTR_0016s11570	POPTR_0016s11570 (11)	scaffold_16:10795560-10795885(-) (11)//scaffold_91:17314-17445(+) (10)	NA	Q9FM89	F-box/FBD/LRR-repeat protein At5g56420	AT5G56420.2	F-box/RNI-like/FBD-like domains-containing protein 	LOC_Os07g06500.1	"OsFBL34 - F-box domain and LRR containing protein, expressed"	Medtr7g143210.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224048.1.S1_s_at	A	A1TS	POPTR_0016s03920	POPTR_0016s03920 (11)	scaffold_16:2188117-2188192(+) (11)//scaffold_16:2217974-2218049(+) (11)//scaffold_1686:3869-3944(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38380.1	plant protein of unknown function domain containing protein	Medtr7g067490.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224050.1.S1_at	A	A1TS	POPTR_0006s13730	POPTR_0006s13730 (11)	scaffold_6:10955931-10956298(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224059.1.S1_s_at	A	A2TS	POPTR_0009s15550	POPTR_0009s15550 (11)//POPTR_0009s15570 (11)	scaffold_9:11997973-11998249(-) (11)//scaffold_9:12009021-12009297(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224061.1.S1_s_at	A	A1TS	POPTR_0016s02265	POPTR_0016s02265 (11)	scaffold_16:1099462-1099808(+) (11)//scaffold_467:17070-17416(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.224062.1.S1_at	A	A1MS	POPTR_0011s01540	POPTR_0011s01540 (11)	scaffold_11:1086668-1086903(+) (11)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT4G22130.1	STRUBBELIG-receptor family 8 	LOC_Os02g09740.1	"STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224066.1.S1_at	A	A1TS	POPTR_0004s22850	POPTR_0004s22850 (11)	scaffold_4:21701109-21701744(+) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT4G20020.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os11g11020.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g006280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224069.1.S1_a_at	A	A1TS	POPTR_0013s03420	POPTR_0013s03420 (11)	scaffold_13:2111513-2111585(-) (11)//scaffold_13:2111941-2112013(-) (11)	POPTR_0013s03570 (8)	NA	NA	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	NA	NA	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224069.1.S1_at	A	A1TS	POPTR_0013s03420	POPTR_0013s03420 (11)	scaffold_13:2111535-2112239(-) (11)	POPTR_0013s03570 (7)	NA	NA	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	NA	NA	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224076.1.S1_s_at	A	A1TS	POPTR_0009s00220	POPTR_0009s00220 (11)	scaffold_1:34267188-34267569(-) (10)//scaffold_9:69381-69777(+) (11)	POPTR_0005s03410 (8)//POPTR_0001s19740 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224077.1.S1_s_at	A	A2TS	POPTR_0004s06825	POPTR_0004s06825 (11)//POPTR_0017s07950 (10)	scaffold_1:5689238-5689435(-) (11)//scaffold_1:14689614-14689811(+) (9)//scaffold_1:16193412-16193609(-) (10)//scaffold_1:19331617-19331814(+) (11)//scaffold_1:37246319-37246516(-) (11)//scaffold_1:41239660-41239857(+) (11)//scaffold_1:44295442-44295639(-) (11)//scaffold_10:1460408-1460605(-) (10)//scaffold_10:9869596-9869793(+) (10)//scaffold_11:591571-591768(+) (10)//scaffold_11:6623311-6623508(+) (11)//scaffold_14:14662948-14663145(+) (11)//scaffold_14:14699810-14700007(-) (11)//scaffold_14:16281036-16281233(-) (11)//scaffold_14:17434631-17434828(-) (11)//scaffold_15:3449946-3450143(+) (11)//scaffold_16:11482216-11482413(-) (11)//scaffold_17:6335729-6335926(+) (10)//scaffold_17:13385362-13385553(+) (10)//scaffold_19:160354-160551(+) (11)//scaffold_19:4874626-4874823(+) (11)//scaffold_19:5020684-5020881(+) (10)//scaffold_19:10309562-10309759(-) (11)//scaffold_3:6584443-6584640(+) (11)//scaffold_3:7780059-7780256(+) (11)//scaffold_316:38547-38744(-) (11)//scaffold_4:5453710-5453907(-) (11)//scaffold_4:8065846-8066043(-) (11)//scaffold_4:16093731-16093928(+) (11)//scaffold_5:24820292-24820489(+) (11)//scaffold_6:1173598-1173795(-) (11)//scaffold_6:8480498-8480695(+) (11)//scaffold_6:14320333-14320530(-) (11)//scaffold_6:15910372-15910569(+) (10)//scaffold_6:24031559-24031756(+) (11)//scaffold_8:16352719-16352916(+) (11)//scaffold_9:3738713-3738910(+) (11)//scaffold_92:3050-3247(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224082.1.S1_x_at	A	A1TS	POPTR_0001s14190	POPTR_0001s14190 (10)	scaffold_1:11148994-11149383(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224087.1.S1_at	A	A2TS	POPTR_0011s01900	POPTR_0011s01900 (11)//POPTR_0011s01690 (10)	scaffold_11:1216381-1216463(-) (10)//scaffold_11:1470344-1470426(-) (11)//scaffold_18:2593461-2593543(+) (10)//scaffold_576:5074-5156(-) (10)	NA	NA	NA	AT5G13950.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1). 	NA	NA	Medtr7g097240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224088.1.S1_s_at	A	A1TS	POPTR_0006s11170	POPTR_0006s11170 (11)	scaffold_1:5689988-5690301(-) (11)//scaffold_1:19330744-19331066(+) (11)//scaffold_1:37247067-37247389(-) (11)//scaffold_1:41238805-41239109(+) (11)//scaffold_1:44296190-44296512(-) (11)//scaffold_10:9868723-9869045(+) (11)//scaffold_11:590716-591020(+) (11)//scaffold_13:6740418-6740731(+) (11)//scaffold_14:16281784-16284148(-) (10)//scaffold_16:11482964-11483268(-) (11)//scaffold_17:13384501-13384805(+) (11)//scaffold_3:7779189-7779511(+) (11)//scaffold_316:39296-39609(-) (9)//scaffold_5:13257935-13258266(-) (10)//scaffold_5:24819422-24819744(+) (11)//scaffold_6:1174347-1174669(-) (11)//scaffold_6:8479624-8479946(+) (11)//scaffold_7:12125817-12126139(-) (11)//scaffold_9:3737857-3738161(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224089.1.S1_at	A	A1TS	POPTR_0007s02670	POPTR_0007s02670 (10)	scaffold_7:1564175-1564208(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224089.1.S1_s_at	A	A1TS	POPTR_0007s02670	POPTR_0007s02670 (11)	scaffold_7:1563719-1563934(+) (11)//scaffold_7:1563850-1564105(+) (11)//scaffold_7:1563934-1564276(+) (11)//scaffold_7:1564030-1564269(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224094.1.S1_at	A	A1TS	POPTR_0019s09870	POPTR_0019s09870 (11)	scaffold_19:11490441-11491002(+) (11)	NA	Q9FH83	Probable WRKY transcription factor 52	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224095.1.S1_at	A	A1TS	POPTR_0123s00220	POPTR_0123s00220 (9)	scaffold_123:10661-11626(-) (9)	NA	O22727	Probable disease resistance protein At1g61190	AT1G61180.2	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os09g10054.1	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224096.1.S1_x_at	A	A2TS	POPTR_0017s13770	POPTR_0017s13770 (11)//POPTR_0035s00410 (10)	scaffold_17:13935859-13936055(+) (11)//scaffold_35:90320-90516(-) (9)//scaffold_35:248358-248554(-) (11)	POPTR_0907s00020 (7)//POPTR_0035s00330 (6)	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.224099.1.S1_at	A	A1MS	POPTR_0014s05890	POPTR_0014s05890 (10)	scaffold_14:4396191-4397041(-) (10)	NA	Q7XAM0	Spindle and kinetochore-associated protein 1 homolog	AT3G60660.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1395 (InterPro:IPR009829); Has 131 Blast hits to 131 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os07g30110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22410.1.S1_at	A	A1TS	POPTR_0017s13440	POPTR_0017s13440 (11)	scaffold_17:13599899-13602272(-) (11)	POPTR_0004s11340 (8)	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G15790.2	RING/U-box superfamily protein 	LOC_Os01g70160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224105.1.S1_s_at	A	A1TS	POPTR_0019s12860	POPTR_0019s12860 (10)	scaffold_19:13870420-13870724(+) (10)	POPTR_0144s00240 (6)//POPTR_0104s00210 (6)//POPTR_0019s12850 (6)	Q9FZB8	Probable LRR receptor-like serine/threonine-protein kinase At1g51810	AT4G29990.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44930.1	"receptor-like protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224107.1.S1_at	A	A2TS	POPTR_0011s08570	POPTR_0011s08590 (11)//POPTR_0011s08570 (11)	scaffold_11:10218984-10219496(-) (11)//scaffold_11:10304677-10305189(-) (11)	NA	NA	NA	AT5G55570.1	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224112.1.S1_at	A	A1TA	POPTR_0010s19030	POPTR_0010s19030 (9)	scaffold_10:17069383-17069568(-) (9)	NA	Q9SIT5	Cation/H(+) antiporter 15	AT2G13620.1	cation/hydrogen exchanger 15 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr3g097130.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.224114.1.S1_at	A	A1TS	POPTR_0011s02110	POPTR_0011s02110 (11)	scaffold_11:1774587-1784223(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224120.1.S1_at	A	A1MS	POPTR_0004s19670	POPTR_0004s19670 (9)	scaffold_4:19460269-19460960(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224123.1.S1_at	A	A1TS	POPTR_0017s12770	POPTR_0017s12770 (11)	scaffold_17:12939087-12939810(+) (11)	NA	NA	NA	AT5G15510.2	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g11400.1	"targeting protein-related, putative, expressed"	Medtr6g015060.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224125.1.S1_s_at	A	A2TS	POPTR_0001s05190	POPTR_0001s05240 (11)//POPTR_0001s05190 (11)	scaffold_1:3981234-3981671(+) (11)//scaffold_1:4013864-4014301(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12600.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011850.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224126.1.S1_s_at	A	A2TS	POPTR_0001s05190	POPTR_0001s05240 (11)//POPTR_0001s05190 (11)	scaffold_1:3982823-3983337(+) (11)//scaffold_1:4015453-4015967(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12600.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011850.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224127.1.S1_s_at	A	A2TS	POPTR_0001s05200	POPTR_0001s05210 (11)//POPTR_0001s05200 (11)	scaffold_1:3990441-3990944(+) (11)//scaffold_1:4001561-4002065(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12580.1	"receptor-like protein kinase, putative"	Medtr8g011860.1	Curculin-like (mannose-binding) lectin 	NA	GO:0005529|sugar binding	NA
PtpAffx.224130.1.S1_at	A	A1TS	POPTR_0001s07380	POPTR_0001s07380 (11)	scaffold_1:5559091-5559351(-) (11)	NA	P52836	Flavonol 3-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os06g42120.1	"sulfotransferase domain containing protein, expressed"	Medtr8g044180.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.224130.1.S1_s_at	A	A1TS	POPTR_0001s07380	POPTR_0001s07380 (11)	scaffold_1:5559457-5559629(-) (11)	NA	P52836	Flavonol 3-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os06g42120.1	"sulfotransferase domain containing protein, expressed"	Medtr8g044180.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.224131.1.S1_at	A	A1TS	POPTR_0001s07370	POPTR_0001s07370 (11)	scaffold_1:5548987-5556159(-) (11)	NA	P52836	Flavonol 3-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr8g043870.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.224132.1.S1_at	A	A1TS	POPTR_0001s07320	POPTR_0001s07320 (10)	scaffold_1:5505298-5506514(+) (10)	POPTR_0003s18910 (8)	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT5G56790.1	Protein kinase superfamily protein 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	AC233661_2.1	Protein kinase-like AC233661.2 12270-6498 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224133.1.S1_at	A	A1TS	POPTR_0001s07040	POPTR_0001s07040 (11)	scaffold_1:5360758-5361398(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224134.1.S1_at	A	A1TS	POPTR_0001s06650	POPTR_0001s06650 (11)	scaffold_1:5089644-5090400(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224135.1.S1_at	A	A1TS	POPTR_0001s06610	POPTR_0001s06610 (11)	scaffold_1:5079542-5080038(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os12g29280.1	"disease resistance protein RGA3, putative, expressed"	Medtr4g012320.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224136.1.S1_at	A	A1TS	POPTR_0001s06610	POPTR_0001s06610 (11)	scaffold_1:5078284-5078694(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os12g29280.1	"disease resistance protein RGA3, putative, expressed"	Medtr4g012320.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224138.1.S1_at	A	A1TS	POPTR_0001s05400	POPTR_0001s05400 (11)	scaffold_1:4162127-4162633(-) (11)	NA	Q9ZQ99	Cytokinin-O-glucosyltransferase 1	AT5G12890.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g42690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr2g117970.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224139.1.S1_at	A	A1TS	POPTR_0001s05260	POPTR_0001s05260 (11)	scaffold_1:4027860-4028835(+) (11)	NA	Q9FGR2	Pentatricopeptide repeat-containing protein At5g59600	AT5G59600.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g36620.1	"pentatricopeptide, putative, expressed"	Medtr4g084310.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22414.1.S1_at	A	A1TS	POPTR_0004s15010	POPTR_0004s15010 (11)	scaffold_4:15676505-15676993(+) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G19190.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.224140.1.S1_at	A	A1TS	POPTR_0001s05250	POPTR_0001s05250 (11)	scaffold_1:4020725-4021245(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12560.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011850.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224144.1.S1_at	A	A1TS	POPTR_0001s05190	POPTR_0001s05190 (11)	scaffold_1:3981144-3981619(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12600.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011850.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224146.1.S1_at	A	A1TS	POPTR_0001s14400	POPTR_0001s14400 (11)	scaffold_1:11294046-11295015(-) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT5G26594.1	response regulator 24 	LOC_Os03g53100.1	"response regulator receiver domain containing protein, expressed"	Medtr7g117350.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224147.1.S1_at	A	A1TS	POPTR_0001s14390	POPTR_0001s14390 (11)	scaffold_1:11290371-11291376(-) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT3G04280.3	response regulator 22 	LOC_Os04g13480.1	"response regulator receiver domain containing protein, expressed"	Medtr7g117970.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224148.1.S1_at	A	A1TS	POPTR_0001s14380	POPTR_0001s14380 (11)	scaffold_1:11287332-11288271(-) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT5G26594.1	response regulator 24 	LOC_Os04g13480.1	"response regulator receiver domain containing protein, expressed"	Medtr7g117350.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224149.1.S1_at	A	A1TS	POPTR_0001s13090	POPTR_0001s13090 (11)	scaffold_1:10176432-10177008(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224150.1.S1_at	A	A1TS	POPTR_0001s12190	POPTR_0001s12190 (11)	scaffold_1:9439873-9440218(-) (11)	NA	O49436	Pentatricopeptide repeat-containing protein At4g20090	AT4G20090.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g30420.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g090110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224152.1.S1_at	A	A1TS	POPTR_0001s10710	POPTR_0001s10710 (11)	scaffold_1:8336435-8336485(+) (11)	NA	Q39828	Dynamin-related protein 5A	AT5G42080.1	dynamin-like protein 	LOC_Os05g48240.1	"dynamin family protein, putative, expressed"	Medtr5g009190.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.224153.1.S1_s_at	A	A2TS	POPTR_0001s09810	POPTR_0001s09810 (11)//POPTR_0003s13190 (11)	scaffold_1:7553997-7554314(-) (11)//scaffold_3:13584591-13584904(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT1G63910.1	myb domain protein 103 	LOC_Os08g05520.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g010100.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224153.1.S1_x_at	A	A1TS	POPTR_0001s09810	POPTR_0001s09810 (11)	scaffold_1:7553308-7554410(-) (11)	POPTR_0003s13190 (6)	Q8LPH6	Transcription factor MYB86	AT1G63910.1	myb domain protein 103 	LOC_Os08g05520.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g010100.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224155.1.S1_at	A	A1TS	POPTR_0001s08320	POPTR_0001s08320 (11)	scaffold_1:6347798-6348256(+) (11)	NA	O64635	Cytochrome P450 76C4	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224157.1.S1_at	A	A1TS	POPTR_0001s17570	POPTR_0001s17570 (11)	scaffold_1:14356697-14357241(+) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr7g117160.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.224158.1.S1_at	A	A1TS	POPTR_0001s17790	POPTR_0001s17790 (11)	scaffold_1:14662802-14662836(-) (11)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os11g43820.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224158.1.S1_s_at	A	A2TS	POPTR_0001s17790	POPTR_0001s17815 (11)//POPTR_0001s17790 (11)	scaffold_1:14662768-14663998(-) (11)//scaffold_1:14716401-14717626(-) (11)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os11g43820.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224159.1.S1_at	A	A1TS	POPTR_0001s17815	POPTR_0001s17815 (11)	scaffold_1:14716347-14716469(-) (11)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os11g43820.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224160.1.S1_at	A	A1TS	POPTR_0001s22170	POPTR_0001s22170 (11)	scaffold_1:20806076-20806415(+) (11)	NA	P13240	Disease resistance response protein 206	AT2G21100.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07770.1	"dirigent, putative, expressed"	Medtr3g138740.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224161.1.S1_at	A	A1MS	POPTR_0001s22050	POPTR_0001s22050 (9)	scaffold_1:20643623-20644689(+) (9)	NA	NA	NA	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os01g56150.1	"OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224162.1.S1_at	A	A1TS	POPTR_0001s21380	POPTR_0001s21380 (11)	scaffold_1:19811817-19813694(+) (11)	NA	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr2g008450.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224163.1.S1_at	A	A1TS	POPTR_0001s18340	POPTR_0001s18340 (11)	scaffold_1:15385179-15385711(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT3G24550.1	proline extensin-like receptor kinase 1 	LOC_Os05g12680.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g159530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224163.1.S1_s_at	A	A1TS	POPTR_0001s18340	POPTR_0001s18340 (11)	scaffold_1:15384935-15385133(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT3G24550.1	proline extensin-like receptor kinase 1 	LOC_Os05g12680.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g159530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224165.1.S1_at	A	A1TS	POPTR_0001s18640	POPTR_0001s18640 (11)	scaffold_1:15693947-15694416(-) (11)	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr2g122680.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.224166.1.S1_at	A	A1TS	POPTR_0001s22470	POPTR_0001s22470 (11)	scaffold_1:21249501-21250321(+) (11)	NA	Q9XIN1	Aluminum-activated malate transporter 7	AT2G27240.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105090.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224167.1.S1_x_at	A	A1TS	POPTR_0001s22490	POPTR_0001s22490 (11)	scaffold_1:21314428-21314706(+) (11)	NA	Q9XIN1	Aluminum-activated malate transporter 7	AT2G27240.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105090.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224168.1.S1_s_at	A	A2TS	POPTR_0001s22500	POPTR_0001s22510 (11)//POPTR_0001s22500 (11)	scaffold_1:21354606-21354878(+) (11)//scaffold_1:21394090-21394362(+) (11)	NA	Q9SJE8	Aluminum-activated malate transporter 2	AT1G08440.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105090.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224169.1.S1_at	A	A1TS	POPTR_0001s22530	POPTR_0001s22530 (11)	scaffold_1:21437327-21437903(-) (11)	NA	Q9MA50	"Pentatricopeptide repeat-containing protein At1g05750, chloroplastic"	AT1G05750.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g53050.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g105210.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22417.1.A1_s_at	A	A1MS	POPTR_0007s15410	POPTR_0007s15410 (11)	scaffold_7:14947852-14948224(-) (11)	NA	Q08A71	Probable protein arginine N-methyltransferase 6	AT3G20020.1	protein arginine methyltransferase 6 	LOC_Os10g34740.1	"methyltransferase, putative, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.22417.2.S1_at	A	A1MS	POPTR_0007s15410	POPTR_0007s15410 (10)	scaffold_7:14947186-14947596(-) (10)	NA	Q08A71	Probable protein arginine N-methyltransferase 6	AT3G20020.1	protein arginine methyltransferase 6 	LOC_Os10g34740.1	"methyltransferase, putative, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.22417.3.A1_s_at	A	A1TS	POPTR_0007s15410	POPTR_0007s15410 (11)	scaffold_7:14948528-14949068(-) (11)	NA	Q08A71	Probable protein arginine N-methyltransferase 6	AT3G20020.1	protein arginine methyltransferase 6 	LOC_Os10g34740.1	"methyltransferase, putative, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.224170.1.S1_at	A	A1TS	POPTR_0001s25090	POPTR_0001s25090 (11)	scaffold_1:24319293-24319850(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT3G53810.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224171.1.S1_s_at	A	A1MS	POPTR_0001s24990	POPTR_0001s24990 (11)	scaffold_1:24236209-24236970(-) (11)	NA	Q9FJD5	Laccase-17	AT5G60020.1	laccase 17 	LOC_Os01g62600.1	"laccase precursor protein, putative"	Medtr4g084160.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224174.1.S1_at	A	A1TS	POPTR_0001s27380	POPTR_0001s27380 (11)	scaffold_1:26275683-26276110(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g28620.1	"retrotransposon protein, putative, unclassified"	Medtr3g015930.1	"Protein of unknown function DUF889, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224175.1.S1_s_at	A	A2TS	POPTR_0001s27430	POPTR_0001s27430 (11)//POPTR_0009s06630 (11)	scaffold_1:26320493-26320643(-) (11)//scaffold_9:6371050-6371200(-) (11)	NA	Q9LXV2	Transcription factor MYB46	AT3G08500.1	myb domain protein 83 	LOC_Os12g33070.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g117450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224177.1.S1_at	A	A1TS	POPTR_0001s28140	POPTR_0001s28140 (11)	scaffold_1:26917100-26917670(+) (11)	NA	P48419	"Flavonoid 3',5'-hydroxylase 2"	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os03g25150.1	"transposon protein, putative, unclassified, expressed"	Medtr3g169570.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224178.1.S1_s_at	A	A1TS	POPTR_0001s35060	POPTR_0001s35060 (11)	scaffold_1:33330645-33331418(-) (11)	NA	Q9FNE1	Cysteine-rich receptor-like protein kinase 42	AT5G40380.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 42 	LOC_Os01g36790.1	"TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g035020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224179.1.S1_at	A	A2TS	POPTR_0001s35310	POPTR_0001s35310 (11)//POPTR_0010s15490 (10)	scaffold_1:33641039-33641256(-) (11)//scaffold_10:14706967-14707177(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224180.1.S1_at	A	A1TS	POPTR_0001s33050	POPTR_0001s33050 (11)	scaffold_1:31284341-31285108(+) (11)	NA	Q9LYV6	GEM-like protein 5	AT5G13200.1	GRAM domain family protein 	LOC_Os12g29400.1	"GRAM domain containing protein, expressed"	Medtr7g096590.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224181.1.S1_x_at	A	A1TS	POPTR_0001s32700	POPTR_0001s32700 (11)	scaffold_1:30986627-30986810(-) (11)	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os01g08610.1	"hAT dimerisation domain-containing protein, putative"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.224182.1.S1_at	A	A1TS	POPTR_0001s32000	POPTR_0001s32000 (11)	scaffold_1:30443101-30443650(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224183.1.S1_at	A	A1TS	POPTR_0001s31590	POPTR_0001s31590 (11)	scaffold_1:29951797-29952582(+) (11)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224184.1.S1_s_at	A	A4TS	POPTR_0001s31550	POPTR_0001s31580 (11)//POPTR_0001s31550 (11)//POPTR_0092s00200 (11)//POPTR_0001s31570 (10)	scaffold_1:29887915-29888501(-) (11)//scaffold_1:29905767-29906353(-) (10)//scaffold_1:29927039-29927624(-) (11)//scaffold_92:11150-11735(-) (11)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25810.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.224185.1.S1_at	A	A1TS	POPTR_0001s31480	POPTR_0001s31480 (10)	scaffold_1:29778185-29778727(+) (10)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr4g118380.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224186.1.S1_at	A	A1TS	POPTR_0001s31480	POPTR_0001s31480 (11)	scaffold_1:29773881-29774379(+) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr4g118380.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224187.1.S1_at	A	A1MS	POPTR_0001s31340	POPTR_0001s31340 (11)	scaffold_1:29676284-29676376(+) (11)	NA	NA	NA	AT2G06541.2	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os08g07950.1	"NB-ARC domain containing protein, expressed"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224188.1.S1_at	A	A1TS	POPTR_0001s31280	POPTR_0001s31280 (11)	scaffold_1:29617337-29618629(+) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.224189.1.S1_at	A	A1TS	POPTR_0001s31040	POPTR_0001s31040 (11)	scaffold_1:29430903-29431050(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT4G34131.1	UDP-glucosyl transferase 73B3 	LOC_Os01g45140.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224195.1.S1_at	A	A1TS	POPTR_0001s38330	POPTR_0001s38330 (11)	scaffold_1:37417128-37417876(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os06g06130.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.224196.1.S1_s_at	A	A4TS	POPTR_0001s38360	POPTR_0001s38400 (11)//POPTR_0001s38360 (11)//POPTR_0001s38380 (11)//POPTR_0001s38370 (10)	scaffold_1:37444726-37445562(-) (11)//scaffold_1:37463774-37464574(-) (10)//scaffold_1:37481322-37482121(-) (11)//scaffold_1:37508407-37509203(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os06g06130.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.224196.1.S1_x_at	A	A1TS	POPTR_0001s38360	POPTR_0001s38360 (11)	scaffold_1:37444525-37445539(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os06g06130.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.224198.1.S1_at	A	A1TS	POPTR_0001s38410	POPTR_0001s38410 (11)	scaffold_1:37514657-37515589(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os06g06130.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.224199.1.S1_at	A	A1TS	POPTR_0001s38690	POPTR_0001s38690 (11)	scaffold_1:37866331-37867085(-) (11)	NA	Q6H9K0	Exopolygalacturonase (Fragment)	AT2G33160.1	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein 	LOC_Os06g35370.1	"polygalacturonase, putative, expressed"	Medtr5g072320.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224200.1.S1_a_at	A	A2TS	POPTR_0001s38870	POPTR_1634s00200 (11)//POPTR_0001s38870 (11)	scaffold_1:38113315-38113359(-) (11)//scaffold_1634:1207-1251(-) (11)//scaffold_1634:1339-1383(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224200.1.S1_at	A	A1TS	POPTR_0001s38870	POPTR_0001s38870 (10)	scaffold_1:38112952-38113432(-) (10)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224201.1.S1_at	A	A1TS	POPTR_0001s42820	POPTR_0001s42820 (10)	scaffold_1:42843427-42843675(-) (10)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224203.1.S1_s_at	A	A10TS	POPTR_0001s42890	POPTR_0001s42890 (11)//POPTR_0001s43160 (11)//POPTR_0001s43190 (11)//POPTR_0080s00210 (11)//POPTR_0080s00240 (11)//POPTR_0001s43180 (11)//POPTR_0001s43270 (11)//POPTR_0001s43250 (11)//POPTR_0080s00220 (11)//POPTR_0001s43260 (11)	scaffold_1:42989912-42990171(+) (11)//scaffold_1:43206968-43214562(+) (11)//scaffold_1:43248502-43248761(+) (11)//scaffold_1:43264052-43264311(+) (11)//scaffold_1:43284534-43284793(-) (11)//scaffold_1:43309803-43310062(+) (11)//scaffold_1:43323655-43323914(+) (11)//scaffold_80:12336-12595(+) (11)//scaffold_80:15718-15977(-) (11)//scaffold_80:70190-70449(-) (11)	POPTR_0080s00250 (6)//POPTR_0080s00230 (6)	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224204.1.S1_at	A	A1TS	POPTR_0001s42890	POPTR_0001s42890 (10)	scaffold_1:42990414-42990870(+) (11)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224206.1.S1_at	A	A1TS	POPTR_0001s43280	POPTR_0001s43280 (11)	scaffold_1:43335262-43336005(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224207.1.S1_x_at	A	A1TS	POPTR_0001s43490	POPTR_0001s43490 (10)	scaffold_1:43615680-43616095(+) (10)	NA	Q42484	Disease resistance protein RPS2	AT4G26090.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224208.1.S1_at	A	A1TS	POPTR_0001s45280	POPTR_0001s45280 (11)	scaffold_1:45803922-45805884(+) (11)	NA	A1L4Y2	Alcohol dehydrogenase-like 3	AT1G32780.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os10g07229.1	"dehydrogenase, putative, expressed"	Medtr3g025530.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224209.1.S1_s_at	A	A2TS	POPTR_0001s46290	POPTR_0001s46290 (11)//POPTR_0001s46310 (10)	scaffold_1:46680903-46681623(+) (11)//scaffold_1:46709197-46709919(+) (10)	NA	Q02200	Lignin-forming anionic peroxidase	AT1G14540.1	Peroxidase superfamily protein 	LOC_Os11g02130.1	"peroxidase precursor, putative, expressed"	Medtr4g114950.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.22421.1.S1_at	A	A1TS	POPTR_0003s15790	POPTR_0003s15790 (11)	scaffold_3:15492055-15492914(+) (11)	NA	Q7XVF9	Probable protein phosphatase 2C 39	AT3G16560.1	Protein phosphatase 2C family protein 	LOC_Os04g33080.3	"protein phosphatase 2C, putative, expressed"	Medtr8g138810.1	Site-specific DNA-methyltransferase (cytosine-N4-specific); Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224210.1.S1_s_at	A	A1TS	POPTR_0001s46360	POPTR_0001s46360 (11)	scaffold_1:46768301-46768757(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G26420.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr4g125010.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224212.1.S1_at	A	A1TS	POPTR_0001s46390	POPTR_0001s46390 (11)	scaffold_1:46784308-46784874(-) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20800.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr4g125010.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224213.1.S1_s_at	A	A3TS	POPTR_0001s46660	POPTR_0001s46660 (11)//POPTR_0001s46680 (11)//POPTR_0001s46670 (11)	scaffold_1:47053549-47054077(+) (11)//scaffold_1:47057249-47057777(+) (11)//scaffold_1:47073887-47074412(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30700.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224214.1.S1_at	A	A1TS	POPTR_0001s46680	POPTR_0001s46680 (11)	scaffold_1:47073925-47074193(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30700.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224216.1.S1_at	A	A1TS	POPTR_0001s46700	POPTR_0001s46700 (11)	scaffold_1:47108378-47108936(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35650.1	"reticuline oxidase-like protein precursor, putative, expressed"	AC147501_16.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 52339-53928 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224217.1.S1_at	A	A1TS	POPTR_0001s46730	POPTR_0001s46730 (11)	scaffold_1:47129445-47130184(+) (11)	NA	Q94AJ5	Probable polygalacturonase At1g80170	AT1G70500.1	Pectin lyase-like superfamily protein 	LOC_Os02g03750.1	"polygalacturonase, putative, expressed"	Medtr2g126040.1	"Pectolytic enzyme, Pectin lyase fold "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224218.1.S1_at	A	A1TS	POPTR_0001s46770	POPTR_0001s46770 (11)	scaffold_1:47186942-47187408(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224219.1.S1_at	A	A1TS	POPTR_0001s46780	POPTR_0001s46780 (11)	scaffold_1:47191015-47192563(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44400.1	FAD-binding Berberine family protein 	LOC_Os06g35650.1	"reticuline oxidase-like protein precursor, putative, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224220.1.S1_at	A	A1TS	POPTR_0001s47290	POPTR_0001s47290 (11)	scaffold_1:47546950-47547412(+) (11)	NA	O65351	Subtilisin-like protease	AT5G59810.1	Subtilase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr8g109190.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.224221.1.S1_at	A	A1TS	POPTR_0001s47300	POPTR_0001s47300 (11)	scaffold_1:47551804-47552269(+) (11)	NA	O65351	Subtilisin-like protease	AT5G59810.1	Subtilase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.224222.1.S1_s_at	A	A1TS	POPTR_0001s47400	POPTR_0001s47400 (11)	scaffold_1:47614041-47614608(-) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30700.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224223.1.S1_at	A	A1TS	POPTR_0002s00370	POPTR_0002s00370 (11)	scaffold_2:100182-100549(+) (11)	NA	Q9LFV3	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730	AT2G33580.1	Protein kinase superfamily protein 	LOC_Os02g09960.1	"LYK8, putative, expressed"	Medtr5g093120.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224224.1.S1_at	A	A1TS	POPTR_0002s01480	POPTR_0002s01480 (11)	scaffold_2:777226-777799(-) (11)	NA	Q9FH04	Alcohol dehydrogenase-like 7	AT5G42250.1	Zinc-binding alcohol dehydrogenase family protein 	LOC_Os07g42924.1	"dehydrogenase, putative, expressed"	Medtr3g111430.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224226.1.S1_at	A	A1TS	POPTR_0002s03960	POPTR_0002s03960 (11)	scaffold_2:2478224-2478732(-) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT2G31180.1	myb domain protein 14 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224227.1.S1_at	A	A1TS	POPTR_0002s04350	POPTR_0002s04350 (11)	scaffold_2:2719377-2719664(+) (11)	NA	P82381	Proteinase inhibitor	AT2G38870.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr1g089920.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.224228.1.S1_at	A	A1TS	POPTR_0002s04780	POPTR_0002s04780 (11)	scaffold_2:3015594-3016506(-) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr7g140920.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.224229.1.S1_at	A	A1TS	POPTR_0002s05340	POPTR_0002s05340 (11)	scaffold_2:3477882-3478239(+) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.224230.1.S1_at	A	A1MS	POPTR_0002s05700	POPTR_0002s05700 (11)	scaffold_2:3748499-3748983(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224231.1.S1_at	A	A1TS	POPTR_0002s07380	POPTR_0002s07380 (11)	scaffold_2:5063277-5063451(+) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT1G43850.2	SEUSS transcriptional co-regulator 	LOC_Os11g10070.1	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224232.1.S1_s_at	A	A3TS	POPTR_0002s07650	POPTR_0002s07670 (11)//POPTR_0002s07660 (11)//POPTR_0002s07650 (11)	scaffold_2:5229917-5230757(-) (11)//scaffold_2:5237494-5238334(-) (11)//scaffold_2:5253455-5254294(-) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224233.1.S1_s_at	A	A1TS	POPTR_0002s07960	POPTR_0002s07960 (11)	scaffold_2:5494542-5494788(-) (11)	NA	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224234.1.S1_at	A	A1TS	POPTR_0002s08690	POPTR_0002s08690 (11)	scaffold_2:6088337-6088790(-) (11)	NA	Q8IYB7	DIS3-like exonuclease 2	AT1G77680.1	Ribonuclease II/R family protein 	LOC_Os02g51780.1	"ribonuclease protein, putative, expressed"	Medtr5g065170.1	Ribonuclease II 	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.224235.1.S1_x_at	A	A1TS	POPTR_0002s09290	POPTR_0002s09290 (9)	scaffold_2:6583963-6584162(+) (11)	NA	Q38836	Agamous-like MADS-box protein AGL11	AT1G22130.1	AGAMOUS-like 104 	LOC_Os06g11970.1	"OsMADS63 - MADS-box family gene with MIKC* type-box, expressed"	AC235748_9.1	"Transcription factor, MADS-box AC235748.1 27637-29898 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.224236.1.S1_at	A	A1TS	POPTR_0002s09620	POPTR_0002s09620 (11)	scaffold_2:6890101-6891540(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g116690.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.224237.1.S1_at	A	A1TS	POPTR_0002s09720	POPTR_0002s09720 (11)	scaffold_2:6956101-6956671(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT1G34670.1	myb domain protein 93 	LOC_Os06g11780.1	"MYB family transcription factor, putative"	Medtr5g029730.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224237.1.S1_x_at	A	A1TS	POPTR_0002s09720	POPTR_0002s09720 (11)	scaffold_2:6956052-6956670(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT1G34670.1	myb domain protein 93 	LOC_Os06g11780.1	"MYB family transcription factor, putative"	Medtr5g029730.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224238.1.S1_at	A	A1TS	POPTR_0002s09890	POPTR_0002s09890 (11)	scaffold_2:7101748-7102542(+) (11)	NA	NA	NA	AT4G08950.1	Phosphate-responsive 1 family protein 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g144900.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224239.1.S1_at	A	A1TS	POPTR_0002s09910	POPTR_0002s09910 (9)	scaffold_2:7106477-7107090(+) (9)	NA	NA	NA	AT5G09440.1	EXORDIUM like 4 	LOC_Os06g11650.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr2g009140.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224242.1.S1_at	A	A1TS	POPTR_0002s15560	POPTR_0002s15560 (11)	scaffold_2:11617363-11618305(+) (11)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os06g01230.1	"no apical meristem protein, putative, expressed"	AC233657_5.1	No apical meristem (NAM) protein AC233657.1 22252-24463 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.224246.1.S1_at	A	A1TS	POPTR_0002s15910	POPTR_0002s15910 (11)	scaffold_2:11858393-11858929(+) (11)	NA	P80074	Myb-related protein Pp1 (Fragment)	AT3G61250.1	myb domain protein 17 	LOC_Os08g33660.1	"MYB family transcription factor, putative, expressed"	Medtr6g031320.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224247.1.S1_at	A	A1TS	POPTR_0002s16270	POPTR_0002s16270 (11)	scaffold_2:12174041-12174099(+) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr1g132770.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.224248.1.S1_s_at	A	A1TS	POPTR_0002s16380	POPTR_0002s16380 (11)	scaffold_2:12251921-12252393(-) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224249.1.S1_at	A	A1TS	POPTR_0002s16500	POPTR_0002s16500 (11)	scaffold_2:12353648-12354184(+) (11)	NA	NA	NA	AT1G01490.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g38870.1	"heavy metal-associated domain containing protein, expressed"	AC235567_30.1	Heavy metal transport/detoxification protein AC235567.1 97384-100523 F EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.224250.1.S1_at	A	A1TS	POPTR_0002s17120	POPTR_0002s17120 (11)	scaffold_2:12916775-12917560(+) (11)	NA	Q9LNJ0	Probable cyclic nucleotide-gated ion channel 10	AT1G01340.2	cyclic nucleotide gated channel 10 	LOC_Os06g33570.1	"cyclic nucleotide-gated ion channel 1, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.224251.1.S1_at	A	A1TS	POPTR_0002s17220	POPTR_0002s17220 (11)	scaffold_2:13000140-13002050(-) (11)	NA	Q84XF3	Dynamin-related protein 1B	AT3G61760.1	DYNAMIN-like 1B 	LOC_Os05g48240.1	"dynamin family protein, putative, expressed"	AC235758_24.1	Dynamin central region; Dynamin; Dynamin GTPase effector AC235758.1 170271-163793 H EGN_Mt090430 200	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.224252.1.S1_at	A	A1TS	POPTR_0002s17460	POPTR_0002s17460 (11)	scaffold_2:13220385-13221246(-) (11)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g65370.1	"MYB family transcription factor, putative"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224255.1.S1_at	A	A1TS	POPTR_0002s20330	POPTR_0002s20330 (11)	scaffold_2:16335763-16335950(-) (11)	NA	P49062	Exopolygalacturonase clone GBGE184	AT1G02790.1	polygalacturonase 4 	LOC_Os06g40880.1	"polygalacturonase, putative, expressed"	Medtr1g108030.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224255.1.S1_s_at	A	A2TS	POPTR_0002s20320	POPTR_0002s20330 (11)//POPTR_0002s20320 (11)	scaffold_2:16319218-16319987(-) (11)//scaffold_2:16335670-16336440(-) (11)	NA	P49062	Exopolygalacturonase clone GBGE184	AT1G02790.1	polygalacturonase 4 	LOC_Os06g40880.1	"polygalacturonase, putative, expressed"	Medtr1g108030.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224256.1.S1_s_at	A	A2TS	POPTR_0002s18820	POPTR_0002s18820 (11)//POPTR_0014s10820 (11)	scaffold_14:8088521-8089538(-) (11)//scaffold_2:14713081-14714063(-) (11)	NA	Q6BQT6	Protein transport protein SEC23	AT4G01810.1	Sec23/Sec24 protein transport family protein 	LOC_Os01g21850.1	"protein transport protein-related, putative, expressed"	Medtr7g134070.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.224257.1.S1_at	A	A1TS	POPTR_0002s21600	POPTR_0002s21600 (11)	scaffold_2:18119461-18119614(-) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G15410.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224258.1.S1_at	A	A1TS	POPTR_0115s00220	POPTR_0115s00220 (11)	scaffold_115:11262-11667(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224259.1.S1_s_at	A	A1TS	POPTR_0017s02200	POPTR_0017s02200 (11)	scaffold_17:1611170-1611599(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224260.1.S1_at	A	A1TS	POPTR_0017s02140	POPTR_0017s02140 (11)	scaffold_17:1566871-1567099(+) (11)	NA	NA	NA	AT3G54230.2	suppressor of abi3-5 	LOC_Os02g07070.2	"RNA recognition motif family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224261.1.S1_at	A	A1TS	POPTR_0017s02200	POPTR_0017s02200 (11)	scaffold_17:1610683-1610996(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224262.1.S1_at	A	A1TS	POPTR_0017s02320	POPTR_0017s02320 (9)	scaffold_154:32172-32759(+) (9)//scaffold_17:1714486-1715072(+) (9)	POPTR_0154s00250 (8)	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr5g028420.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.224263.1.S1_s_at	A	A3TS	POPTR_0017s02540	POPTR_1581s00200 (11)//POPTR_0202s00220 (11)//POPTR_0017s02540 (11)	scaffold_1581:2609-2924(+) (11)//scaffold_17:1832905-1842468(+) (11)//scaffold_202:11532-20674(-) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.224265.1.S1_at	A	A1TS	POPTR_0202s00210	POPTR_0202s00210 (11)	scaffold_202:8555-9435(-) (11)	POPTR_0017s02550 (7)	Q3YJS9	Patatin-3-Kuras 1	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.3	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.224265.1.S1_s_at	A	A2TS	POPTR_0017s02550	POPTR_0202s00210 (11)//POPTR_0017s02550 (11)	scaffold_17:1833589-1848974(+) (11)//scaffold_202:8868-9321(-) (11)	NA	Q2MY51	Patatin group M-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr3g148140.1	Patatin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224266.1.S1_at	A	A1TS	POPTR_0017s02570	POPTR_0017s02570 (10)	scaffold_17:1852776-1853318(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224267.1.S1_at	A	A1TS	POPTR_0017s02580	POPTR_0017s02580 (9)	scaffold_17:1868687-1869166(-) (9)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224268.1.S1_at	A	A1MS	POPTR_0293s00200	POPTR_0293s00200 (11)	scaffold_293:10066-10614(+) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT4G19500.1	nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding 	NA	NA	Medtr4g109890.1	TIR; Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.224269.1.S1_at	A	A1TS	POPTR_0017s02680	POPTR_0017s02680 (9)	scaffold_17:1922623-1923049(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os09g14490.1	"TIR-NBS type disease resistance protein, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.224270.1.S1_s_at	A	A1TS	POPTR_0017s03100	POPTR_0017s03100 (11)	scaffold_17:2235073-2235441(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224271.1.S1_s_at	A	A1TS	POPTR_0005s14320	POPTR_0005s14320 (11)	scaffold_5:11395025-11395202(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224272.1.S1_s_at	A	A2TS	POPTR_0005s14340	POPTR_0005s14340 (11)//POPTR_0017s03120 (11)	scaffold_17:2245762-2246154(-) (11)//scaffold_5:11402292-11402684(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31550.1	"disease resistance protein RGA4, putative"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224274.1.S1_at	A	A1TS	POPTR_0005s14320	POPTR_0005s14320 (10)	scaffold_5:11393530-11394076(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224276.1.S1_at	A	A1TS	POPTR_0005s14450	POPTR_0005s14450 (11)	scaffold_5:11478395-11478462(-) (11)//scaffold_5:11486845-11486910(-) (9)	NA	Q9FNV9	Transcription factor MYB113	AT1G66370.1	myb domain protein 113 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g086820.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224276.1.S1_x_at	A	A1TS	POPTR_0005s14450	POPTR_0005s14450 (11)	scaffold_5:11478368-11478462(-) (11)//scaffold_5:11486766-11486910(-) (10)	NA	Q9FNV9	Transcription factor MYB113	AT1G66370.1	myb domain protein 113 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g086820.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224277.1.S1_x_at	A	A1TS	POPTR_0005s14450	POPTR_0005s14450 (9)	scaffold_5:11478489-11485139(-) (11)	NA	Q9FNV9	Transcription factor MYB113	AT1G66370.1	myb domain protein 113 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g086820.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224279.1.S1_x_at	A	A2TS	POPTR_0005s14470	POPTR_0005s14470 (11)//POPTR_0005s14460 (9)	scaffold_5:11511525-11512013(-) (11)	NA	Q9FNV9	Transcription factor MYB113	AT1G66370.1	myb domain protein 113 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g086820.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224280.1.S1_s_at	A	A1TS	POPTR_0005s14710	POPTR_0005s14710 (9)	scaffold_5:11693158-11693844(+) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31550.1	"disease resistance protein RGA4, putative"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224281.1.S1_s_at	A	A1TS	POPTR_0005s14710	POPTR_0005s14710 (11)	scaffold_5:11691329-11691758(+) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31550.1	"disease resistance protein RGA4, putative"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224283.1.S1_at	A	A1TS	POPTR_0005s14900	POPTR_0005s14900 (11)	scaffold_5:11783774-11784432(-) (11)	NA	Q9FKD0	Probable S-adenosylmethionine-dependent methyltransferase At5g37970	AT5G37970.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g56950.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.224283.1.S1_s_at	A	A3TS	POPTR_0005s14900	POPTR_0005s14900 (11)//POPTR_0005s14940 (11)//POPTR_0005s14920 (10)	scaffold_5:11783969-11784392(-) (11)//scaffold_5:11799940-11809903(-) (11)//scaffold_5:11809673-11810096(-) (10)	NA	Q9FKD0	Probable S-adenosylmethionine-dependent methyltransferase At5g37970	AT5G37970.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g56950.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.224284.1.S1_at	A	A1TS	POPTR_0005s14970	POPTR_0005s14970 (11)	scaffold_5:11811819-11819478(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	NA	NA	LOC_Os02g38386.1	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g012000.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.224285.1.S1_at	A	A1TS	POPTR_0002s25430	POPTR_0002s25430 (11)	scaffold_2:22494906-22495351(-) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT5G26594.1	response regulator 24 	LOC_Os03g53100.1	"response regulator receiver domain containing protein, expressed"	Medtr7g117970.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224286.1.S1_at	A	A1TS	POPTR_0002s25530	POPTR_0002s25530 (10)	scaffold_2:22592295-22593287(+) (11)	NA	Q03662	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os05g34150.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224287.1.S1_at	A	A1TS	POPTR_0002s25590	POPTR_0002s25590 (11)	scaffold_2:22666233-22667760(-) (11)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT2G20300.1	Protein kinase superfamily protein 	LOC_Os02g57080.2	"serine/threonine-protein kinase, putative, expressed"	Medtr7g117650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22429.2.A1_a_at	A	A1TS	POPTR_0006s19820	POPTR_0006s19820 (11)	scaffold_6:18838183-18840427(+) (11)	NA	Q9WTV5	26S proteasome non-ATPase regulatory subunit 9	AT5G57950.1	"26S proteasome regulatory subunit, putative "	LOC_Os09g25310.1	"26S proteasome non-ATPase regulatory subunit 9, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224293.1.S1_at	A	A1TS	POPTR_0003s01970	POPTR_0003s01970 (9)	scaffold_3:1862635-1862667(-) (9)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.224293.1.S1_x_at	A	A1TS	POPTR_0003s01970	POPTR_0003s01970 (11)	scaffold_3:1862440-1862667(-) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.224294.1.S1_at	A	A1TS	POPTR_0027s00490	POPTR_0027s00490 (11)	scaffold_27:379013-379133(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039400.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224295.1.S1_at	A	A1TS	POPTR_0027s00400	POPTR_0027s00400 (11)	scaffold_27:194138-194626(-) (11)	NA	Q9SCT4	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2	AT1G07390.3	receptor like protein 1 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	AC235756_17.1	"Leucine-rich repeat, typical subtype AC235756.1 127596-123999 E EGN_Mt090430 200"	NA	GO:0005515|protein binding	NA
PtpAffx.224298.1.S1_s_at	A	A1TS	POPTR_0003s05650	POPTR_0003s05650 (11)	scaffold_3:7062524-7064379(-) (11)	NA	Q9SEX2	Katanin p60 ATPase-containing subunit	AT1G80350.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g49000.1	"katanin p60 ATPase-containing subunit, putative, expressed"	Medtr4g165730.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.224299.1.S1_at	A	A1MS	POPTR_0003s05260	POPTR_0003s05260 (9)	scaffold_3:6487425-6488334(-) (9)	NA	O81755	Putative Peroxidase 48	AT4G33870.1	Peroxidase superfamily protein 	LOC_Os01g51550.1	peroxidase family protein	Medtr4g009100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.2243.1.S1_a_at	A	A1TS	POPTR_0011s05960	POPTR_0011s05960 (11)	scaffold_11:5989723-5990011(+) (11)	NA	NA	NA	AT5G46020.1	"CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os05g43970.1	"heat- and acid-stable phosphoprotein, putative, expressed"	Medtr2g018420.1	"28 kDa heat- and acid-stable phosphoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2243.3.A1_at	A	A1TS	POPTR_0013s11950	POPTR_0013s11950 (11)	scaffold_1103:5569-5940(-) (9)//scaffold_13:12592604-12592979(-) (11)	NA	Q39231	Sucrose transport protein SUC2	AT1G22710.1	sucrose-proton symporter 2 	LOC_Os02g58080.1	"transporter, major facilitator family, putative, expressed"	Medtr8g146560.1	"General substrate transporter; Sucrose/H+ symporter, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2243.5.S1_at	A	A1MS	POPTR_0011s05960	POPTR_0011s05960 (11)	scaffold_11:5989781-5989879(+) (11)	NA	NA	NA	AT5G46020.1	"CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os05g43970.1	"heat- and acid-stable phosphoprotein, putative, expressed"	Medtr2g018420.1	"28 kDa heat- and acid-stable phosphoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224300.1.S1_at	A	A2TS	POPTR_0003s05220	POPTR_0003s05220 (11)//POPTR_0275s00210 (9)	scaffold_275:15437-16174(+) (9)//scaffold_3:6466479-6467233(+) (11)	NA	Q9C821	Proline-rich receptor-like protein kinase PERK15	AT1G52290.1	Protein kinase superfamily protein 	LOC_Os05g12680.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g159530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224301.1.S1_at	A	A2TS	POPTR_0003s04580	POPTR_0003s04580 (11)//POPTR_0032s00250 (11)	scaffold_3:5379435-5379913(-) (11)//scaffold_32:264175-264666(-) (11)	NA	P80728	Mavicyanin	AT2G31050.1	Cupredoxin superfamily protein 	LOC_Os08g04340.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.224302.1.S1_at	A	A1TS	POPTR_0003s07960	POPTR_0003s07960 (11)	scaffold_3:9449881-9450443(+) (11)	NA	Q9M4P3	"Pentatricopeptide repeat-containing protein At4g16835, mitochondrial"	AT4G16835.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g05750.1	"pentatricopeptide, putative, expressed"	Medtr4g155250.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224303.1.S1_at	A	A1TS	POPTR_0007s09490	POPTR_0007s09490 (11)	scaffold_7:8887393-8887578(-) (11)	NA	O22567	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT4G15560.1	Deoxyxylulose-5-phosphate synthase 	LOC_Os07g09190.1	"transketolase, putative, expressed"	Medtr8g079280.1	"Transketolase, C-terminal-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.224305.1.S1_at	A	A1TS	POPTR_0003s09300	POPTR_0003s09300 (11)	scaffold_3:10606977-10607650(-) (11)	NA	Q8GWP0	Transcription factor MYB39	AT5G16770.2	myb domain protein 9 	LOC_Os06g11780.1	"MYB family transcription factor, putative"	Medtr5g029730.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224306.1.S1_at	A	A1TS	POPTR_0003s09790	POPTR_0003s09790 (11)	scaffold_3:11028439-11028970(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028050.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224307.1.S1_at	A	A1TS	POPTR_0003s10490	POPTR_0003s10490 (11)	scaffold_3:11447658-11448090(+) (11)	NA	Q940A6	"Pentatricopeptide repeat-containing protein At4g19440, chloroplastic"	AT4G19440.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g19310.1	"pentatricopeptide repeat domain containing protein, putative"	Medtr8g086350.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224308.1.S1_at	A	A1TS	POPTR_0003s11810	POPTR_0003s11810 (11)	scaffold_3:12574744-12575210(+) (11)	NA	O23976	7-ethoxycoumarin O-deethylase	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224309.1.S1_at	A	A1TS	POPTR_0003s12010	POPTR_0003s12010 (11)	scaffold_3:12697745-12698306(-) (11)	NA	Q39547	Cucumisin	AT5G59190.1	subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr7g126990.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.22431.2.S1_a_at	A	A1TS	POPTR_0014s16990	POPTR_0014s16990 (11)	scaffold_14:13177032-13177708(-) (11)	NA	Q9M462	"Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic"	AT5G48300.1	ADP glucose pyrophosphorylase  1 	LOC_Os08g25734.1	"glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed"	Medtr3g107090.1	Nucleotidyl transferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.224310.1.S1_at	A	A1TS	POPTR_0003s12910	POPTR_0003s12910 (11)	scaffold_3:13336492-13337801(-) (11)	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G63700.1	Protein kinase superfamily protein 	LOC_Os02g44642.1	"STE_MEKK_ste11_MAP3K.10 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g126720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224311.1.S1_at	A	A1TS	POPTR_0003s13180	POPTR_0003s13180 (9)	scaffold_3:13578578-13579070(+) (11)	NA	P51819	Heat shock protein 83	AT5G52640.1	heat shock protein 90.1 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224312.1.S1_at	A	A1TS	POPTR_0003s13190	POPTR_0003s13190 (11)	scaffold_3:13583880-13584595(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT1G63910.1	myb domain protein 103 	LOC_Os08g05520.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g010100.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224312.1.S1_x_at	A	A1TS	POPTR_0003s13190	POPTR_0003s13190 (11)	scaffold_3:13583880-13584923(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT1G63910.1	myb domain protein 103 	LOC_Os08g05520.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g010100.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224313.1.S1_at	A	A1TS	POPTR_0003s15360	POPTR_0003s15360 (11)	scaffold_3:15160622-15160955(-) (11)	NA	O49436	Pentatricopeptide repeat-containing protein At4g20090	AT4G20090.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g30420.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g090110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224313.1.S1_x_at	A	A1TS	POPTR_0003s15360	POPTR_0003s15360 (11)	scaffold_3:15160622-15160955(-) (11)	NA	O49436	Pentatricopeptide repeat-containing protein At4g20090	AT4G20090.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g30420.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g090110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224314.1.S1_at	A	A1TS	POPTR_0003s16380	POPTR_0003s16380 (11)	scaffold_3:15955324-15955962(+) (11)	NA	Q9LYV6	GEM-like protein 5	AT5G13200.1	GRAM domain family protein 	LOC_Os12g29400.1	"GRAM domain containing protein, expressed"	Medtr7g096590.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224315.1.S1_at	A	A1TS	POPTR_0003s17070	POPTR_0003s17070 (11)	scaffold_3:16547322-16548368(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g073430.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224316.1.S1_s_at	A	A1TS	POPTR_1359s00200	POPTR_1359s00200 (11)	scaffold_1359:973-1416(+) (11)//scaffold_3:16586355-16590806(+) (9)	POPTR_1359s00210 (8)	Q9M8Y4	Two-component response regulator ARR22	AT3G04280.3	response regulator 22 	LOC_Os04g13480.1	"response regulator receiver domain containing protein, expressed"	Medtr7g117350.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224317.1.S1_at	A	A1TS	POPTR_1359s00200	POPTR_1359s00200 (11)	scaffold_1359:1200-1972(+) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT3G04280.3	response regulator 22 	LOC_Os04g13480.1	"response regulator receiver domain containing protein, expressed"	Medtr7g117350.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224318.1.S1_at	A	A1TS	POPTR_0003s17580	POPTR_0003s17580 (11)	scaffold_3:16912801-16913824(-) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT3G04280.3	response regulator 22 	LOC_Os03g53100.1	"response regulator receiver domain containing protein, expressed"	Medtr7g117350.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224319.1.S1_at	A	A1TS	POPTR_0003s17590	POPTR_0003s17590 (11)	scaffold_3:16915285-16916244(-) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT3G04280.3	response regulator 22 	LOC_Os04g13480.1	"response regulator receiver domain containing protein, expressed"	Medtr7g117350.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224320.1.S1_at	A	A2TS	POPTR_0003s17730	POPTR_0003s17730 (11)//POPTR_0003s17740 (11)	scaffold_3:17029880-17030617(-) (11)//scaffold_3:17042436-17043173(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.224321.1.S1_at	A	A1TS	POPTR_0003s18120	POPTR_0003s18120 (11)	scaffold_3:17312962-17313512(-) (11)	NA	Q9S9N5	Putative cyclic nucleotide-gated ion channel 7	AT1G19780.1	cyclic nucleotide gated channel  8 	LOC_Os03g44440.1	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr4g021850.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.224322.1.S1_s_at	A	A1TS	POPTR_0003s18140	POPTR_0003s18140 (11)	scaffold_3:17342944-17343636(+) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os02g11760.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr7g117160.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.224325.1.S1_at	A	A1TS	POPTR_0003s20290	POPTR_0003s20290 (11)	scaffold_3:18807407-18807985(-) (11)	NA	Q9LQQ1	"Pentatricopeptide repeat-containing protein At1g07740, mitochondrial"	AT1G07740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g47510.1	"pentatricopeptide, putative"	Medtr3g149040.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224326.1.S1_at	A	A1TS	POPTR_0003s20090	POPTR_0003s20090 (11)	scaffold_3:18683071-18683656(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g043920.1	"Peptidase aspartic, active site; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224327.1.S1_at	A	A1TS	POPTR_0003s20080	POPTR_0003s20080 (11)	scaffold_3:18675593-18676073(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g029930.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224328.1.S1_at	A	A1TS	POPTR_0003s19980	POPTR_0003s19980 (11)	scaffold_3:18614840-18615419(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039400.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224329.1.S1_at	A	A2TS	POPTR_0003s19950	POPTR_0003s19950 (11)//POPTR_0178s00210 (11)	scaffold_178:4794-5276(-) (11)//scaffold_3:18597335-18597817(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.22433.2.S1_a_at	A	A1TS	POPTR_0003s15380	POPTR_0003s15380 (11)	scaffold_3:15171046-15173316(-) (11)	NA	NA	NA	AT5G44710.1	"CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). "	LOC_Os05g05560.1	expressed protein	Medtr6g031350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224330.1.S1_at	A	A1TS	POPTR_0178s00240	POPTR_0178s00240 (11)	scaffold_178:37755-40432(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224331.1.S1_at	A	A1TS	POPTR_0003s19600	POPTR_0003s19600 (11)	scaffold_3:18282760-18283297(-) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT4G29050.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os03g15250.1	"lectin-like receptor kinase, putative"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224332.1.S1_at	A	A1TS	POPTR_0003s19290	POPTR_0003s19290 (11)	scaffold_3:18072787-18073327(+) (11)	NA	P52839	Flavonol sulfotransferase-like	AT5G07010.1	sulfotransferase 2A 	LOC_Os04g44460.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.224333.1.S1_at	A	A1TS	POPTR_0003s18760	POPTR_0003s18760 (10)	scaffold_3:17717535-17717896(+) (11)	NA	P52837	Flavonol 4'-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os12g04300.1	sulfotransferase domain containing protein	Medtr8g044180.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.224333.1.S1_x_at	A	A1TS	POPTR_0003s18760	POPTR_0003s18760 (9)	scaffold_3:17717413-17717900(+) (11)	NA	P52837	Flavonol 4'-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os12g04300.1	sulfotransferase domain containing protein	Medtr8g044180.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.224335.1.S1_at	A	A1TS	POPTR_0003s18700	POPTR_0003s18700 (9)	scaffold_3:17653017-17683490(+) (11)	NA	A5YVF1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	LOC_Os12g09580.1	"leafbladeless1, putative, expressed"	Medtr3g151680.1	"Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224336.1.S1_s_at	A	A2TS	POPTR_0003s18660	POPTR_0003s18680 (11)//POPTR_0003s18660 (11)	scaffold_3:17660403-17660665(+) (11)//scaffold_3:17671749-17672011(+) (11)	NA	A5YVF1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	LOC_Os12g09580.1	"leafbladeless1, putative, expressed"	Medtr3g151680.1	"Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224337.1.S1_s_at	A	A1TS	POPTR_0003s18670	POPTR_0003s18670 (11)	scaffold_3:17665682-17666552(+) (11)//scaffold_3:17676501-17677363(+) (10)	NA	A5YVF1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	LOC_Os12g09580.1	"leafbladeless1, putative, expressed"	Medtr3g151700.1	"Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224340.1.S1_at	A	A1TS	POPTR_0003s21600	POPTR_0003s21600 (10)	scaffold_3:19702234-19702819(+) (11)	NA	Q9LEH3	Peroxidase 15	AT5G06720.1	peroxidase 2 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	Medtr7g112100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.224341.1.S1_at	A	A2TS	POPTR_0003s21920	POPTR_1037s00210 (11)//POPTR_0003s21920 (11)	scaffold_1037:4728-5034(-) (11)//scaffold_3:19896089-19896395(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g39930.1	"receptor-like protein kinase, putative"	Medtr5g013260.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224342.1.S1_at	A	A1TS	POPTR_0004s01330	POPTR_0004s01330 (9)	scaffold_4:722188-722783(-) (11)	NA	Q9LFF1	"Pentatricopeptide repeat-containing protein At3g53700, chloroplastic"	AT3G53700.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g40020.1	"PPR repeat containing protein, expressed"	AC233662_58.1	Pentatricopeptide repeat AC233662.1 266570-264088 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224346.1.S1_s_at	A	A3TS	POPTR_0004s01450	POPTR_0004s01450 (11)//POPTR_0012s00850 (11)//POPTR_0012s00880 (11)	scaffold_12:539248-539480(+) (11)//scaffold_12:558904-559136(+) (11)//scaffold_4:827344-827576(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os04g23700.1	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224347.1.S1_at	A	A1TS	POPTR_0004s01460	POPTR_0004s01460 (11)	scaffold_4:835460-835989(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02310.1	expressed protein	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224348.1.S1_at	A	A1TS	POPTR_0004s01620	POPTR_0004s01620 (10)	scaffold_4:980341-982712(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G21690.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr5g034470.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.224349.1.S1_s_at	A	A2TS	POPTR_0004s02230	POPTR_0004s02240 (11)//POPTR_0004s02230 (11)	scaffold_4:1396591-1397124(+) (11)//scaffold_4:1407848-1408381(+) (11)	NA	Q43735	Peroxidase 27	AT3G01190.1	Peroxidase superfamily protein 	LOC_Os11g43980.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.224351.1.S1_at	A	A1TS	POPTR_0004s02280	POPTR_0004s02280 (9)	scaffold_4:1425557-1431581(+) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	AC233661_22.1	"Serine/threonine protein kinase, active site AC233661.2 117252-119995 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224352.1.S1_s_at	A	A4TS	POPTR_0004s02330	POPTR_0004s02330 (11)//POPTR_0138s00230 (11)//POPTR_1247s00200 (11)//POPTR_0004s02300 (10)	scaffold_1247:1809-2196(-) (11)//scaffold_138:26937-27324(+) (11)//scaffold_4:1445399-1445756(+) (10)//scaffold_4:1475227-1475614(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os11g45540.1	"TKL_IRAK_DUF26-lh.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224353.1.S1_s_at	A	A4TS	POPTR_0004s02310	POPTR_0138s00230 (11)//POPTR_0004s02310 (11)//POPTR_0004s02340 (11)//POPTR_0314s00200 (11)	scaffold_138:30831-31581(+) (11)//scaffold_314:4958-5697(-) (11)//scaffold_4:1453814-1454554(+) (11)//scaffold_4:1480031-1480785(+) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os10g04720.1	"TKL_IRAK_DUF26-la.5 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224356.1.S1_s_at	A	A2TS	POPTR_0004s02320	POPTR_0004s02320 (11)//POPTR_0004s02350 (10)	scaffold_138:35046-35601(+) (9)//scaffold_4:1461237-1461980(+) (11)//scaffold_4:1484663-1485129(+) (10)	POPTR_0138s00240 (8)	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35290.1	"TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224360.1.S1_x_at	A	A1TS	POPTR_0004s02370	POPTR_0004s02370 (11)	scaffold_4:1498982-1499437(+) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g43560.1	"TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224362.1.S1_s_at	A	A5TS	POPTR_0004s02360	POPTR_0004s02360 (11)//POPTR_0004s02480 (11)//POPTR_0138s00250 (11)//POPTR_0004s02390 (11)//POPTR_0004s02450 (11)	scaffold_138:49117-49397(+) (11)//scaffold_4:1492016-1492296(+) (11)//scaffold_4:1509394-1509674(+) (11)//scaffold_4:1591744-1592024(+) (11)//scaffold_4:1632062-1632342(+) (11)	POPTR_0004s02410 (8)	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os05g41370.1	"TKL_IRAK_DUF26-la.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224368.1.S1_x_at	A	A1TS	POPTR_0004s02490	POPTR_0004s02490 (11)	scaffold_4:1638831-1639167(+) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g43560.1	"TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224369.1.S1_at	A	A1TS	POPTR_0004s02500	POPTR_0004s02500 (10)	scaffold_4:1649653-1650105(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35580.1	"TKL_IRAK_DUF26-lc.20 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22437.1.S1_at	A	A1TS	POPTR_0011s11250	POPTR_0011s11250 (11)	scaffold_11:13975168-13975822(+) (11)	NA	O49813	Olee1-like protein	AT1G29140.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os04g32680.1	"POEI20 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr3g101320.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224370.1.S1_at	A	A1TS	POPTR_0004s02640	POPTR_0004s02640 (11)	scaffold_4:1767402-1768113(+) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224371.1.S1_at	A	A1TS	POPTR_0004s02660	POPTR_0004s02660 (11)	scaffold_4:1775218-1775963(-) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224375.1.S1_s_at	A	A1TS	POPTR_0004s02760	POPTR_0004s02760 (11)	scaffold_4:1837243-1841395(+) (11)	POPTR_0728s00200 (8)	Q9C5S9	Cysteine-rich receptor-like protein kinase 6	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr4g124540.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224376.1.S1_at	A	A1TS	POPTR_0004s02700	POPTR_0004s02700 (11)	scaffold_4:1805997-1806034(+) (11)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os07g36590.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124620.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224376.1.S1_s_at	A	A2TS	POPTR_0004s02690	POPTR_0004s02700 (11)//POPTR_0004s02690 (11)	scaffold_4:1792969-1793285(+) (11)//scaffold_4:1805656-1805972(+) (11)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr4g124620.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224378.1.S1_at	A	A1TS	POPTR_0004s03150	POPTR_0004s03150 (11)	scaffold_4:2125410-2125942(-) (11)	POPTR_0004s03110 (6)	P52839	Flavonol sulfotransferase-like	AT1G13420.1	sulfotransferase 4B 	LOC_Os01g20950.1	"sulfotransferase domain containing protein, expressed"	Medtr3g061400.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.224379.1.S1_s_at	A	A1TS	POPTR_0004s03330	POPTR_0004s03330 (11)	scaffold_4:2279354-2279585(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224380.1.S1_at	A	A1TS	POPTR_0004s03840	POPTR_0004s03840 (11)	scaffold_4:2728789-2729174(-) (11)	NA	Q40392	TMV resistance protein N	AT1G61105.1	Toll-Interleukin-Resistance (TIR) domain family protein 	LOC_Os07g37950.1	expressed protein	Medtr2g014620.1	TIR 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.224381.1.S1_at	A	A1TS	POPTR_0004s06820	POPTR_0004s06820 (11)	scaffold_4:5450307-5450823(-) (11)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224381.1.S1_s_at	A	A5TS	POPTR_0004s06820	POPTR_0004s06840 (11)//POPTR_0004s06981 (11)//POPTR_0004s06930 (11)//POPTR_0004s06920 (11)//POPTR_0004s06820 (11)	scaffold_4:5450503-5450875(-) (11)//scaffold_4:5464091-5464463(-) (11)//scaffold_4:5705145-5705517(+) (11)//scaffold_4:5754292-5754664(-) (11)//scaffold_4:5803642-5804014(-) (11)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224382.1.S1_at	A	A1TS	POPTR_1358s00200	POPTR_1358s00200 (11)	scaffold_1358:1848-2380(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12450.1	"receptor-like protein kinase 2 precursor, putative"	Medtr6g038640.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224383.1.S1_at	A	A1TS	POPTR_0004s06650	POPTR_0004s06650 (11)	scaffold_4:5332893-5332995(-) (11)	NA	Q9FTA0	GEM-like protein 4	AT5G08350.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os02g42440.1	"GEM, putative, expressed"	Medtr1g143990.1	Isopenicillin N synthetase; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224383.1.S1_s_at	A	A1TS	POPTR_0004s06650	POPTR_0004s06650 (11)	scaffold_4:5332995-5333768(-) (11)	NA	Q9FTA0	GEM-like protein 4	AT5G08350.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os02g42440.1	"GEM, putative, expressed"	Medtr1g143990.1	Isopenicillin N synthetase; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224385.1.S1_at	A	A1TS	POPTR_0004s06050	POPTR_0004s06050 (11)	scaffold_4:4820955-4821404(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os04g23760.1	"lectin protein kinase family protein, putative"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224386.1.S1_at	A	A1TS	POPTR_0004s05640	POPTR_0004s05640 (11)	scaffold_4:4405139-4405483(+) (11)	NA	P43297	Cysteine proteinase RD21a	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os05g43230.1	"oryzain alpha chain precursor, putative, expressed"	Medtr1g068320.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224387.1.S1_at	A	A1TS	POPTR_0004s05190	POPTR_0004s05190 (11)	scaffold_4:3938741-3939434(-) (11)	NA	Q9LFN8	Glutamate receptor 2.6	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.224388.1.S1_at	A	A1TS	POPTR_0004s05180	POPTR_0004s05180 (11)	scaffold_4:3923234-3923930(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g26160.1	"glutamate receptor, putative, expressed"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.224389.1.S1_at	A	A1TS	POPTR_0004s05170	POPTR_0004s05170 (11)	scaffold_4:3912951-3913639(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g26160.1	"glutamate receptor, putative, expressed"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.224390.1.S1_s_at	A	A5TS	POPTR_0004s09580	POPTR_0442s00200 (11)//POPTR_0004s09610 (11)//POPTR_0004s09580 (11)//POPTR_0004s09640 (11)//POPTR_0005s15270 (9)	scaffold_4:8119676-8119932(+) (11)//scaffold_4:8136635-8136891(+) (11)//scaffold_4:8156177-8156433(+) (11)//scaffold_442:5577-5833(-) (11)//scaffold_5:12025080-12025283(+) (9)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G66880.1	Protein kinase superfamily protein 	LOC_Os01g49529.1	"OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224391.1.S1_at	A	A1TS	POPTR_0004s09630	POPTR_0004s09630 (11)	scaffold_4:8126377-8126822(+) (9)//scaffold_4:8145896-8146342(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38260.1	Protein kinase superfamily protein 	LOC_Os01g49614.1	"Protein kinase domain containing protein, expressed"	Medtr7g093620.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224392.1.S1_at	A	A1TS	POPTR_0004s08710	POPTR_0004s08710 (11)	scaffold_4:7274471-7274880(+) (11)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224393.1.S1_at	A	A1TS	POPTR_0004s08620	POPTR_0004s08620 (11)	scaffold_4:7163341-7164176(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr6g062690.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224397.1.S1_x_at	A	A1TS	POPTR_0004s07300	POPTR_0004s07300 (11)	scaffold_4:6031182-6031708(+) (11)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G62930.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224398.1.S1_x_at	A	A1TS	POPTR_0004s07290	POPTR_0004s07290 (11)	scaffold_4:6019442-6019800(+) (11)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G62930.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224399.1.S1_at	A	A1TS	POPTR_0004s07190	POPTR_0004s07190 (11)	scaffold_4:5945656-5945760(-) (11)	NA	P51819	Heat shock protein 83	AT5G52640.1	heat shock protein 90.1 	LOC_Os04g01740.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.224399.1.S1_s_at	A	A1TS	POPTR_0004s07190	POPTR_0004s07190 (11)	scaffold_4:5945636-5946206(-) (11)	NA	P51819	Heat shock protein 83	AT5G52640.1	heat shock protein 90.1 	LOC_Os04g01740.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.224400.1.S1_at	A	A1TS	POPTR_0004s07150	POPTR_0004s07150 (11)	scaffold_4:5911562-5912041(-) (11)	NA	NA	NA	AT5G52760.1	Copper transport protein family 	LOC_Os03g03500.1	"heavy metal-associated domain containing protein, expressed"	Medtr6g061870.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.224404.1.S1_at	A	A1TS	POPTR_0004s10490	POPTR_0004s10490 (11)	scaffold_4:9023709-9025350(-) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT5G38560.1	Protein kinase superfamily protein 	LOC_Os01g53640.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g035520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224407.1.S1_at	A	A1TS	POPTR_0004s14330	POPTR_0004s14330 (11)	scaffold_4:14785367-14785913(-) (11)	NA	P38222	Ribosomal N-lysine methyltransferase 3	AT3G56570.1	SET domain-containing protein 	LOC_Os01g65730.1	"SET domain containing protein, expressed"	Medtr7g035140.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224408.1.S1_at	A	A1TS	POPTR_0004s11990	POPTR_0004s11990 (11)	scaffold_4:10888271-10888777(-) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.224409.1.S1_at	A	A1TS	POPTR_0014s18983	POPTR_0014s18983 (10)	scaffold_1034:3866-4252(-) (9)//scaffold_14:16651938-16652321(+) (10)//scaffold_2:16186096-16186482(-) (9)//scaffold_4:4058395-4058784(-) (10)//scaffold_4:11612261-11612672(-) (11)	POPTR_0018s06430 (8)//POPTR_0006s15620 (7)//POPTR_0004s05305 (6)	NA	NA	AT3G17450.1	hAT dimerisation domain-containing protein 	LOC_Os01g28200.1	"transposon protein, putative, unclassified"	Medtr6g014180.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.224410.1.S1_at	A	A1TS	POPTR_0004s16120	POPTR_0004s16120 (11)	scaffold_4:16556414-16556448(-) (11)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr3g159470.2	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.224411.1.S1_at	A	A1TS	POPTR_0004s16290	POPTR_0004s16290 (11)	scaffold_4:16749076-16749117(+) (11)	NA	Q9LN49	3-ketoacyl-CoA synthase 4	AT1G19440.1	3-ketoacyl-CoA synthase 4 	LOC_Os05g49290.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr4g095830.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.224411.1.S1_s_at	A	A3TS	POPTR_0004s16290	POPTR_1902s00200 (11)//POPTR_0009s11940 (11)//POPTR_0004s16290 (11)	scaffold_1902:3523-3722(+) (11)//scaffold_4:16748950-16749149(+) (11)//scaffold_9:9835551-9835750(+) (11)	NA	Q9LN49	3-ketoacyl-CoA synthase 4	AT1G19440.1	3-ketoacyl-CoA synthase 4 	LOC_Os05g49290.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr4g095830.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.224411.1.S1_x_at	A	A1TS	POPTR_0004s16290	POPTR_0004s16290 (11)	scaffold_4:16748798-16749117(+) (11)	NA	Q9LN49	3-ketoacyl-CoA synthase 4	AT1G19440.1	3-ketoacyl-CoA synthase 4 	LOC_Os05g49290.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr4g095830.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.224412.1.S1_at	A	A1TS	POPTR_0004s16370	POPTR_0004s16370 (11)	scaffold_4:16848838-16849487(+) (11)	NA	Q8VZA1	Laccase-11	AT5G03260.1	laccase 11 	LOC_Os01g44330.1	"laccase precursor protein, putative, expressed"	Medtr5g020510.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224413.1.S1_at	A	A1TS	POPTR_0004s16480	POPTR_0004s16480 (9)	scaffold_4:16936614-16937732(+) (9)	NA	NA	NA	AT5G53670.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os10g30990.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224416.1.S1_at	A	A1TS	POPTR_0004s17850	POPTR_0004s17850 (11)	scaffold_4:17894589-17894935(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224418.1.S1_at	A	A1TS	POPTR_0004s19540	POPTR_0004s19540 (11)	scaffold_4:19353321-19353954(+) (11)	NA	O65351	Subtilisin-like protease	AT5G59810.1	Subtilase family protein 	LOC_Os02g53860.1	"OsSub22 - Putative Subtilisin homologue, expressed"	Medtr4g069680.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224419.1.S1_at	A	A1TS	POPTR_0009s17110	POPTR_0009s17110 (11)	scaffold_9:12884492-12886200(+) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G38180.1	FAR1-related sequence 5 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr5g106890.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.224420.1.S1_at	A	A1TS	POPTR_0009s17010	POPTR_0009s17010 (11)	scaffold_9:12827824-12828544(-) (11)	NA	Q6H9K0	Exopolygalacturonase (Fragment)	AT4G18180.1	Pectin lyase-like superfamily protein 	LOC_Os08g23790.1	"polygalacturonase, putative, expressed"	Medtr2g074020.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224421.1.S1_at	A	A1TS	POPTR_0009s16990	POPTR_0009s16990 (9)	scaffold_9:12821821-12822364(+) (11)	NA	O65493	Xylem cysteine proteinase 1	AT4G35350.1	xylem cysteine peptidase 1 	LOC_Os01g73980.1	"xylem cysteine proteinase 2 precursor, putative, expressed"	Medtr3g159890.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224424.1.S1_s_at	A	A2TS	POPTR_0009s15610	POPTR_0009s15650 (11)//POPTR_0009s15610 (11)	scaffold_9:12038925-12039459(-) (11)//scaffold_9:12058188-12058722(-) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os02g02120.1	OsWAK11 - OsWAK receptor-like protein kinase	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224425.1.S1_s_at	A	A3TS	POPTR_0009s15630	POPTR_0009s15900 (11)//POPTR_0009s15630 (11)//POPTR_0009s15690 (11)	scaffold_9:12047100-12047559(-) (11)//scaffold_9:12076103-12076562(-) (11)//scaffold_9:12205764-12206223(-) (11)	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT1G16130.1	wall associated kinase-like 2 	LOC_Os02g42150.1	"OsWAK14 - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224427.1.S1_at	A	A1TS	POPTR_0009s14680	POPTR_0009s14680 (10)	scaffold_9:11444518-11445003(+) (11)	NA	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os01g52750.1	"OsSub3 - Putative Subtilisin homologue, expressed"	Medtr8g086940.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.224428.1.S1_at	A	A1TS	POPTR_0009s14230	POPTR_0009s14230 (10)	scaffold_9:11203200-11203894(+) (10)	NA	Q9SGY7	Putative proline-rich receptor-like protein kinase PERK11	AT1G21590.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os03g62340.1	"protein kinase family protein, putative, expressed"	Medtr3g163400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224429.1.S1_s_at	A	A1TS	POPTR_0009s13610	POPTR_0009s13610 (11)	scaffold_9:10803479-10803844(-) (11)	NA	Q38967	Amino acid permease 2	AT5G09220.1	amino acid permease 2 	LOC_Os02g01210.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224430.1.S1_at	A	A1TS	POPTR_0009s13350	POPTR_0009s13350 (11)	scaffold_9:10646901-10647151(+) (11)	NA	P13240	Disease resistance response protein 206	AT2G21100.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	AC234702_16.1	Plant disease resistance response protein AC234702.1 90900-91694 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224432.1.S1_at	A	A2TS	POPTR_0009s11940	POPTR_1902s00200 (11)//POPTR_0009s11940 (11)	scaffold_1902:3371-3690(+) (11)//scaffold_9:9835399-9835718(+) (11)	NA	Q9LN49	3-ketoacyl-CoA synthase 4	AT1G19440.1	3-ketoacyl-CoA synthase 4 	LOC_Os05g49290.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr4g095830.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.224432.1.S1_x_at	A	A2TS	POPTR_0009s11940	POPTR_1902s00200 (11)//POPTR_0009s11940 (11)	scaffold_1902:3371-3690(+) (11)//scaffold_9:9835399-9835718(+) (11)	NA	Q9LN49	3-ketoacyl-CoA synthase 4	AT1G19440.1	3-ketoacyl-CoA synthase 4 	LOC_Os05g49290.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr4g095830.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.224433.1.S1_at	A	A1TS	POPTR_0009s11810	POPTR_0009s11810 (11)	scaffold_9:9731525-9732535(+) (11)	NA	Q8GX23	Proline-rich receptor-like protein kinase PERK5	AT4G34440.1	Protein kinase superfamily protein 	LOC_Os05g12680.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g093550.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224434.1.S1_at	A	A1MS	POPTR_0009s11220	POPTR_0009s11220 (11)	scaffold_9:9393107-9393610(-) (11)	NA	Q9ZQF1	"Pentatricopeptide repeat-containing protein At2g15630, mitochondrial"	AT2G15630.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g40130.1	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g092860.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224435.1.S1_at	A	A1TS	POPTR_0009s11120	POPTR_0009s11120 (11)	scaffold_9:9343809-9344288(+) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT5G26594.1	response regulator 24 	LOC_Os03g53100.1	"response regulator receiver domain containing protein, expressed"	Medtr7g117970.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224436.1.S1_at	A	A1TS	POPTR_0009s10550	POPTR_0009s10550 (11)	scaffold_9:9030198-9030873(+) (11)	NA	Q8VZA1	Laccase-11	AT5G03260.1	laccase 11 	LOC_Os01g44330.1	"laccase precursor protein, putative, expressed"	Medtr5g020510.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224437.1.S1_at	A	A1TS	POPTR_0009s10340	POPTR_0009s10340 (11)	scaffold_9:8903514-8904093(+) (11)	NA	O65351	Subtilisin-like protease	AT4G34980.1	subtilisin-like serine protease 2 	LOC_Os04g35140.1	"OsSub41 - Putative Subtilisin homologue, expressed"	Medtr7g089060.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.224438.1.S1_at	A	A1TS	POPTR_0009s09510	POPTR_0009s09510 (11)	scaffold_9:8380040-8380564(-) (11)	NA	Q9LYZ9	Pentatricopeptide repeat-containing protein At5g02860	AT5G02860.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g40120.1	"pentatricopeptide, putative, expressed"	Medtr2g041460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224440.1.S1_at	A	A1TS	POPTR_0009s07290	POPTR_0009s07290 (11)	scaffold_9:6845040-6845278(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224443.1.S1_at	A	A1TS	POPTR_0009s04290	POPTR_0009s04290 (11)	scaffold_9:4736473-4737183(+) (11)	NA	Q39547	Cucumisin	AT3G46850.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr8g005510.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.224444.1.S1_s_at	A	A4TS	POPTR_0009s04061	POPTR_0009s04061 (11)//POPTR_0009s04080 (11)//POPTR_0009s04100 (11)//POPTR_0009s04120 (11)	scaffold_9:4607321-4607607(+) (11)//scaffold_9:4621262-4621548(+) (11)//scaffold_9:4631878-4632164(+) (11)//scaffold_9:4650511-4650797(+) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G53810.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44900.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224445.1.S1_s_at	A	A5TS	POPTR_0009s04020	POPTR_0009s04110 (11)//POPTR_0009s04050 (11)//POPTR_0009s04020 (11)//POPTR_0009s04030 (11)//POPTR_0009s04040 (9)	scaffold_9:4583720-4583955(+) (11)//scaffold_9:4593490-4593725(+) (11)//scaffold_9:4598873-4603154(+) (11)//scaffold_9:4602919-4602973(+) (9)//scaffold_9:4638949-4639181(+) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G53810.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224447.1.S1_s_at	A	A4TS	POPTR_0009s04061	POPTR_0009s04061 (11)//POPTR_0009s04080 (11)//POPTR_0009s04100 (11)//POPTR_0009s04120 (11)	scaffold_9:4606863-4607094(+) (11)//scaffold_9:4620804-4621035(+) (11)//scaffold_9:4631420-4631651(+) (11)//scaffold_9:4650053-4650284(+) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G53810.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44900.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224450.1.S1_at	A	A1TS	POPTR_0009s04020	POPTR_0009s04020 (10)	scaffold_9:4583463-4583496(+) (10)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G53810.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224452.1.S1_at	A	A1TS	POPTR_0009s02750	POPTR_0009s02750 (11)	scaffold_9:3514466-3515014(+) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.224453.1.S1_at	A	A1TS	POPTR_0009s02480	POPTR_0009s02480 (11)	scaffold_9:3242717-3243263(-) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT3G29590.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g57480.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224454.1.S1_at	A	A1TS	POPTR_0009s02310	POPTR_0009s02310 (11)	scaffold_9:3052691-3053217(+) (11)	NA	Q9SJE8	Aluminum-activated malate transporter 2	AT1G08440.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105090.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224455.1.S1_at	A	A1TS	POPTR_0009s02300	POPTR_0009s02300 (11)	scaffold_9:3039934-3040634(+) (11)	NA	Q9SJE8	Aluminum-activated malate transporter 2	AT1G08440.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105090.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224456.1.S1_at	A	A1TS	POPTR_0009s01590	POPTR_0009s01590 (11)	scaffold_9:2071008-2071549(+) (11)	NA	Q9SL29	Putative cyclic nucleotide-gated ion channel 15	AT2G28260.1	cyclic nucleotide-gated channel 15 	LOC_Os02g41710.1	"cyclic nucleotide-gated ion channel, putative, expressed"	AC233683_6.1	Cyclic nucleotide-binding; Ion transport protein AC233683.2 39853-37118 E EGN_Mt090430 200	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.224458.1.S1_s_at	A	A1TS	POPTR_0009s00740	POPTR_0009s00740 (11)	scaffold_9:836840-838522(-) (11)	NA	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os06g43930.1	"OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.224461.1.S1_at	A	A1TS	POPTR_0005s06350	POPTR_0005s06350 (11)	scaffold_5:4217957-4218406(+) (11)	NA	Q40392	TMV resistance protein N	AT4G16990.1	"disease resistance protein (TIR-NBS class), putative "	LOC_Os07g37950.1	expressed protein	Medtr2g047020.1	TIR; Heat shock protein Hsp70; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.224462.1.S1_at	A	A1MS	POPTR_0005s06610	POPTR_0005s06610 (9)	scaffold_5:4396052-4396494(-) (9)//scaffold_5:4422374-4422925(-) (10)	NA	Q9FZ80	Sulfotransferase 17	AT2G03770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g30810.1	"sulfotransferase domain containing protein, expressed"	Medtr3g061400.1	Sulfotransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224463.1.S1_at	A	A1TS	POPTR_0005s06810	POPTR_0005s06810 (11)	scaffold_5:4568515-4570198(-) (11)	NA	Q13472	DNA topoisomerase 3-alpha	AT5G63920.1	topoisomerase 3alpha 	LOC_Os03g06900.1	"DNA topoisomerase 3 protein, putative, expressed"	Medtr3g142940.1	DNA topoisomerase I; TOPRIM; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003916|DNA topoisomerase activity||GO:0008270|zinc ion binding	GO:0005694|chromosome
PtpAffx.224464.1.S1_at	A	A1TS	POPTR_0005s07100	POPTR_0005s07100 (11)	scaffold_5:4754771-4755343(+) (11)	NA	NA	NA	AT5G08770.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr3g142610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224465.1.S1_at	A	A1TS	POPTR_0005s08180	POPTR_0005s08180 (11)	scaffold_5:5631716-5632475(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05870.1	"receptor kinase, putative, expressed"	Medtr5g026130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224466.1.S1_at	A	A1TS	POPTR_0005s09040	POPTR_0005s09040 (11)	scaffold_5:6346391-6347165(+) (11)	NA	Q9FTA0	GEM-like protein 4	AT5G08350.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os10g34730.1	"GEM, putative, expressed"	Medtr1g143990.1	Isopenicillin N synthetase; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224467.1.S1_at	A	A1TS	POPTR_0005s09080	POPTR_0005s09080 (11)	scaffold_5:6370674-6371006(+) (11)	NA	O65039	Vignain	AT5G45890.1	senescence-associated gene 12 	LOC_Os04g13090.1	"vignain precursor, putative"	Medtr5g022460.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224468.1.S1_at	A	A1TS	POPTR_0005s09140	POPTR_0005s09140 (10)	scaffold_5:6392701-6393099(-) (10)	NA	O65039	Vignain	AT5G45890.1	senescence-associated gene 12 	LOC_Os04g13090.1	"vignain precursor, putative"	Medtr8g112770.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224470.1.S1_at	A	A1MS	POPTR_0005s09990	POPTR_0005s09990 (10)	scaffold_5:7083927-7084493(+) (10)	NA	Q9CAN0	"Pentatricopeptide repeat-containing protein At1g63130, mitochondrial"	AT1G63130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g05920.1	"Rf1, mitochondrial precursor, putative, expressed"	Medtr6g089560.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224474.1.S1_at	A	A1TS	POPTR_0005s17250	POPTR_0005s17250 (11)	scaffold_5:14484702-14485250(+) (11)	NA	NA	NA	AT5G64260.1	EXORDIUM like 2 	LOC_Os08g37840.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g120640.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224475.1.S1_at	A	A1TS	POPTR_0005s17080	POPTR_0005s17080 (11)	scaffold_5:14183159-14183751(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT1G34670.1	myb domain protein 93 	LOC_Os06g11780.1	"MYB family transcription factor, putative"	Medtr4g107720.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224477.1.S1_at	A	A1MS	POPTR_0005s16500	POPTR_0005s16500 (11)	scaffold_5:13345413-13345555(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.224477.1.S1_x_at	A	A1MS	POPTR_0005s16500	POPTR_0005s16500 (11)	scaffold_5:13345385-13345555(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.224482.1.S1_at	A	A1TS	POPTR_0005s22250	POPTR_0005s22250 (11)	scaffold_5:21228741-21229387(-) (11)	NA	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224484.1.S1_at	A	A1TS	POPTR_0005s22800	POPTR_0005s22800 (11)	scaffold_5:21695219-21695734(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g10550.1	"NBS-LRR disease resistance protein, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224485.1.S1_s_at	A	A2TS	POPTR_0005s22910	POPTR_0005s22910 (11)//POPTR_0005s22900 (9)	scaffold_5:21773120-21782130(-) (11)//scaffold_5:21781349-21782555(-) (10)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G59030.1	MATE efflux family protein 	LOC_Os12g42130.1	"MATE efflux family protein, putative, expressed"	Medtr5g097420.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.224488.1.S1_at	A	A1TS	POPTR_0005s23750	POPTR_0005s23750 (11)	scaffold_5:22504489-22505433(+) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr7g140920.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.224489.1.S1_at	A	A1TS	POPTR_0005s23840	POPTR_0005s23840 (11)	scaffold_5:22576089-22576455(-) (11)	NA	Q5XEP9	3-ketoacyl-CoA synthase 17	AT1G04220.1	3-ketoacyl-CoA synthase 2 	LOC_Os02g11070.1	"3-ketoacyl-CoA synthase, putative, expressed"	AC233668_12.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase AC233668.2 25806-29562 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.224490.1.S1_at	A	A1TS	POPTR_0005s24140	POPTR_0005s24140 (11)	scaffold_5:22774293-22775369(-) (11)	POPTR_0002s04400 (7)	NA	NA	AT2G30630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g43300.2	expressed protein	Medtr1g089770.1	"H1flk, putative "	GO:0001906|cell killing	GO:0005524|ATP binding	NA
PtpAffx.224491.1.S1_at	A	A1TS	POPTR_0005s25440	POPTR_0005s25440 (11)	scaffold_5:23698060-23698425(-) (11)	NA	P43297	Cysteine proteinase RD21a	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os05g43230.1	"oryzain alpha chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224492.1.S1_at	A	A1TS	POPTR_0005s25730	POPTR_0005s25730 (11)	scaffold_5:23931758-23933261(+) (11)	POPTR_0002s02810 (8)	Q52KW8	Protein RCC2 homolog	AT1G19880.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g56720.1	"RCC2, putative, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224493.1.S1_at	A	A1TS	POPTR_0005s25740	POPTR_0005s25740 (10)	scaffold_5:23937186-23937742(-) (10)	NA	O65782	Cytochrome P450 83B1	AT4G31500.1	"cytochrome P450, family 83, subfamily B, polypeptide 1 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr1g028100.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224495.1.S1_at	A	A1TS	POPTR_0005s26250	POPTR_0005s26250 (11)	scaffold_5:24321231-24321675(+) (11)	NA	P50699	Thaumatin-like protein	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224497.1.S1_at	A	A1TS	POPTR_0005s27100	POPTR_0005s27100 (11)	scaffold_5:24898406-24898970(-) (11)	NA	NA	NA	AT1G76250.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 74 Blast hits to 74 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os02g02730.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224498.1.S1_at	A	A1TS	POPTR_0005s27340	POPTR_0005s27340 (11)	scaffold_5:25054355-25055232(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT1G20650.1	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224499.1.S1_at	A	A1TS	POPTR_0006s00370	POPTR_0006s00370 (11)	scaffold_6:153568-154231(-) (11)	NA	O65351	Subtilisin-like protease	AT5G59810.1	Subtilase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.224500.1.S1_at	A	A1TS	POPTR_0006s00880	POPTR_0006s00880 (11)	scaffold_6:484624-485139(-) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21790.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g32010.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g097830.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224501.1.S1_at	A	A1TS	POPTR_0006s00910	POPTR_0006s00910 (11)	scaffold_6:515701-516277(-) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21790.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g32010.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g097770.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224502.1.S1_at	A	A1TS	POPTR_0006s01280	POPTR_0006s01280 (11)	scaffold_6:728217-728728(+) (11)	NA	NA	NA	AT5G45460.1	unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224503.1.S1_at	A	A1TS	POPTR_0006s01380	POPTR_0006s01380 (9)	scaffold_6:798729-799235(-) (9)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224504.1.S1_at	A	A1TS	POPTR_1227s00200	POPTR_1227s00200 (10)	scaffold_1227:2735-3268(-) (11)	NA	NA	NA	AT5G45530.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224505.1.S1_at	A	A1TS	POPTR_0006s01700	POPTR_0006s01700 (11)	scaffold_6:1043942-1044269(+) (11)	NA	Q9FMF6	"Pentatricopeptide repeat-containing protein At5g64320, mitochondrial"	AT5G64320.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g22370.1	"retrotransposon protein, putative, unclassified"	Medtr5g097270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224507.1.S1_at	A	A2TS	POPTR_0006s01920	POPTR_0006s01920 (11)//POPTR_0006s01990 (9)	scaffold_6:1149078-1150085(-) (11)//scaffold_6:1163634-1163892(-) (9)//scaffold_6:1218796-1219053(-) (9)	POPTR_0006s01950 (7)	Q8GWE0	"Pentatricopeptide repeat-containing protein At4g16390, chloroplastic"	AT4G16390.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os03g11670.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr8g148450.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224508.1.S1_at	A	A1TS	POPTR_0006s02140	POPTR_0006s02140 (11)	scaffold_6:1398056-1399345(-) (11)	NA	Q9SWG3	Protein FAR-RED IMPAIRED RESPONSE 1	AT4G15090.1	FRS (FAR1 Related Sequences) transcription factor family 	LOC_Os11g45530.1	"transposon protein, putative, unclassified"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.224509.1.S1_at	A	A1TS	POPTR_0006s02450	POPTR_0006s02450 (11)	scaffold_6:1612596-1613163(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr6g014660.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224512.1.S1_at	A	A1TS	POPTR_0019s05925	POPTR_0019s05925 (10)	scaffold_1:5454769-5454866(+) (11)//scaffold_1:6374744-6374841(+) (10)//scaffold_1:15545415-15545512(-) (11)//scaffold_1:23305644-23305741(+) (10)//scaffold_1:24753253-24753350(-) (10)//scaffold_1:26240315-26240393(-) (9)//scaffold_1:41918241-41918338(-) (10)//scaffold_11:2074001-2074098(+) (11)//scaffold_11:2623829-2623926(-) (9)//scaffold_12:8257629-8257726(+) (11)//scaffold_14:13341660-13341757(+) (9)//scaffold_15:5947707-5947804(+) (9)//scaffold_16:1627306-1627403(-) (9)//scaffold_16:7490152-7490249(+) (11)//scaffold_16:8896249-8896346(-) (10)//scaffold_18:7806773-7806869(-) (9)//scaffold_19:6343637-6343717(-) (10)//scaffold_225:8239-8319(+) (10)//scaffold_278:33645-33742(+) (10)//scaffold_3:218304-218401(-) (11)//scaffold_3:7362104-7362201(-) (11)//scaffold_4:4740418-4740515(-) (11)//scaffold_4:9114571-9114668(+) (11)//scaffold_5:24194263-24194360(+) (11)//scaffold_6:12481520-12481617(+) (11)//scaffold_6:20476649-20476746(-) (11)//scaffold_7:6594835-6594932(+) (11)//scaffold_7:8628251-8628348(+) (11)//scaffold_7:10899372-10899469(-) (10)//scaffold_9:5842563-5842660(+) (10)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os02g26500.1	"retrotransposon protein, putative, unclassified"	Medtr2g071720.1	Protein of unknown function DUF635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224513.1.S1_s_at	A	A1TS	POPTR_0006s20270	POPTR_0006s20270 (11)	scaffold_6:19317209-19317664(+) (11)	NA	Q13231	Chitotriosidase-1	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain 	LOC_Os11g27400.1	"glycosyl hydrolase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.224515.1.S1_at	A	A1TS	POPTR_0006s23240	POPTR_0006s23240 (10)	scaffold_6:22027258-22028071(-) (10)	NA	Q9ZUT4	Pentatricopeptide repeat-containing protein At2g37320	AT2G37320.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os11g17530.2	"pentatricopeptide, putative, expressed"	Medtr7g093710.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224516.1.S1_s_at	A	A1TS	POPTR_0006s23780	POPTR_0006s23780 (11)	scaffold_6:22511169-22511517(+) (11)	NA	Q9S9K9	Transcription factor MYB3	AT1G22640.1	myb domain protein 3 	LOC_Os06g10350.1	"MYB family transcription factor, putative, expressed"	Medtr8g105480.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224517.1.S1_at	A	A1TS	POPTR_0006s25230	POPTR_0006s25230 (11)	scaffold_6:23641262-23641777(-) (11)	NA	O80592	Amino acid permease 8	AT1G10010.1	amino acid permease 8 	LOC_Os06g36180.1	"amino acid transporter, putative, expressed"	Medtr3g127950.1	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224518.1.S1_at	A	A1TS	POPTR_0006s25670	POPTR_0006s25670 (11)	scaffold_6:24056625-24057164(+) (11)	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr1g010210.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.224519.1.S1_at	A	A1MS	POPTR_0006s25890	POPTR_0006s25890 (11)	scaffold_6:24240343-24240881(-) (11)	NA	Q9CAN0	"Pentatricopeptide repeat-containing protein At1g63130, mitochondrial"	AT1G63130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g40020.1	"PPR repeat containing protein, expressed"	Medtr3g080270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224520.1.S1_at	A	A1TS	POPTR_0006s25910	POPTR_0006s25910 (11)	scaffold_6:24248606-24249033(-) (11)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224520.1.S1_x_at	A	A1TS	POPTR_0006s25910	POPTR_0006s25910 (11)	scaffold_6:24248606-24249033(-) (11)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224521.1.S1_at	A	A1TS	POPTR_0006s25940	POPTR_0006s25940 (9)	scaffold_6:24255098-24255948(-) (10)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT3G24550.1	proline extensin-like receptor kinase 1 	LOC_Os05g12680.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g159530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224522.1.S1_at	A	A1TS	POPTR_0006s26390	POPTR_0006s26390 (9)	scaffold_6:24610535-24611210(+) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr7g140920.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.224523.1.S1_at	A	A1TS	POPTR_0006s26460	POPTR_0006s26460 (11)	scaffold_6:24685130-24685673(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr3g136320.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.224524.1.S1_at	A	A1TS	POPTR_0006s26530	POPTR_0006s26530 (11)	scaffold_6:24727523-24728011(+) (11)	NA	O48780	3-ketoacyl-CoA synthase 11	AT2G26640.1	3-ketoacyl-CoA synthase 11 	LOC_Os05g49900.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr8g119040.1	"Ribosomal protein S10; Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.224525.1.S1_at	A	A1TS	POPTR_0006s26580	POPTR_0006s26580 (11)	scaffold_6:24755123-24756418(+) (11)	NA	Q38854	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT5G11380.1	1-deoxy-D-xylulose 5-phosphate synthase 3 	LOC_Os06g05100.1	"transketolase, putative, expressed"	Medtr3g136470.1	"Transketolase, C-terminal "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.224526.1.S1_at	A	A1TS	POPTR_0006s26690	POPTR_0006s26690 (11)	scaffold_6:24823037-24823574(-) (11)	NA	Q9SV46	"Pentatricopeptide repeat-containing protein At3g54980, mitochondrial"	AT3G54980.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g42620.2	"pentatricopeptide containing protein, putative, expressed"	Medtr4g104120.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224527.1.S1_at	A	A1TS	POPTR_0006s26860	POPTR_0006s26860 (11)	scaffold_6:24937274-24937854(+) (11)	NA	A8MQA3	Pentatricopeptide repeat-containing protein At4g21065	AT4G21065.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g60690.1	"pentatricopeptide, putative, expressed"	Medtr1g013720.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224528.1.S1_at	A	A1TS	POPTR_0006s27070	POPTR_0006s27070 (11)	scaffold_6:25083728-25084309(-) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os06g29810.3	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224529.1.S1_at	A	A1TS	POPTR_0006s27520	POPTR_0006s27520 (11)	scaffold_6:25393139-25393588(+) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.22453.1.S1_a_at	A	A2TS	POPTR_0001s35260	POPTR_0001s35260 (11)//POPTR_0017s10820 (10)	scaffold_1:33562832-33564043(+) (11)//scaffold_17:10347213-10348440(-) (10)	NA	Q58E77	WD repeat-containing protein 82-B	AT5G14530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g46570.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086290.1	"WD repeat-containing protein 5, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22453.1.S1_at	A	A1TS	POPTR_0001s35260	POPTR_0001s35260 (11)	scaffold_1:33562801-33564311(+) (11)	NA	Q58E77	WD repeat-containing protein 82-B	AT5G14530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g46570.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086290.1	"WD repeat-containing protein 5, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224530.1.S1_s_at	A	A2TS	POPTR_0006s27520	POPTR_0006s27520 (11)//POPTR_0006s27530 (11)	scaffold_6:25393183-25393462(+) (11)//scaffold_6:25396713-25396992(+) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.224531.1.S1_at	A	A1TS	POPTR_0157s00210	POPTR_0157s00210 (11)	scaffold_157:9356-9507(-) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.224532.1.S1_at	A	A1MS	POPTR_0006s28590	POPTR_0006s28590 (10)	scaffold_6:26246767-26247146(-) (11)	NA	Q9SJA4	Probable cyclic nucleotide-gated ion channel 14	AT2G24610.1	cyclic nucleotide-gated channel 14 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224533.1.S1_at	A	A1TS	POPTR_0006s28610	POPTR_0006s28610 (10)	scaffold_6:26251872-26252379(-) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224534.1.S1_at	A	A1TS	POPTR_0006s28620	POPTR_0006s28620 (11)	scaffold_6:26240266-26255994(-) (11)	NA	Q9SJA4	Probable cyclic nucleotide-gated ion channel 14	AT2G24610.1	cyclic nucleotide-gated channel 14 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224535.1.S1_s_at	A	A1TS	POPTR_0007s00210	POPTR_0007s00210 (11)	scaffold_7:13715-15314(-) (11)	NA	Q945S8	Histone-lysine N-methyltransferase ASHH3	AT2G44150.1	histone-lysine N-methyltransferase ASHH3 	LOC_Os09g13740.1	"SET domain containing protein, expressed"	Medtr6g070840.1	Nuclear protein SET; SET-related region; AWS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224536.1.S1_at	A	A1TS	POPTR_0007s00390	POPTR_0007s00390 (11)	scaffold_7:133914-134555(+) (11)	NA	P48979	Polygalacturonase	AT2G43890.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr2g056320.1	"Regulator of chromosome condensation, RCC1; Parallel beta-helix repeat "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224538.1.S1_at	A	A1TS	POPTR_0007s00520	POPTR_0007s00520 (11)	scaffold_7:211912-212670(+) (11)	NA	P48979	Polygalacturonase	AT2G43870.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr4g114910.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224540.1.S1_s_at	A	A2MS	POPTR_0007s00600	POPTR_0007s00670 (11)//POPTR_0007s00600 (11)	scaffold_7:266789-267196(-) (11)//scaffold_7:334627-335034(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224543.1.S1_at	A	A1TS	POPTR_0007s01210	POPTR_0007s01210 (10)	scaffold_7:657624-658139(+) (10)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224545.1.S1_s_at	A	A3TS	POPTR_0007s02200	POPTR_0007s02290 (11)//POPTR_0007s02200 (11)//POPTR_0007s02250 (11)	scaffold_7:1319538-1319821(-) (11)//scaffold_7:1330540-1330822(-) (11)//scaffold_7:1341333-1341616(-) (11)//scaffold_7:1359475-1359758(-) (11)	POPTR_0007s02220 (8)	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G70250.1	"receptor serine/threonine kinase, putative "	LOC_Os01g02400.1	"protein kinase domain containing protein, expressed"	Medtr1g034890.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224548.1.S1_at	A	A1TS	POPTR_0007s02430	POPTR_0007s02430 (11)	scaffold_7:1435232-1435776(-) (11)	NA	Q9M9X9	"Pentatricopeptide repeat-containing protein At1g06710, mitochondrial"	AT1G06710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g41140.1	"PPR repeat containing protein, expressed"	Medtr5g007390.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224549.1.S1_s_at	A	A3TS	POPTR_0007s02560	POPTR_0007s02560 (11)//POPTR_1693s00200 (11)//POPTR_0007s02570 (10)	scaffold_1693:2265-2668(+) (11)//scaffold_7:1508757-1509160(+) (11)//scaffold_7:1512762-1512975(+) (10)	NA	Q9LXG3	Peroxidase 56	AT5G15180.1	Peroxidase superfamily protein 	LOC_Os11g43980.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.224552.1.S1_at	A	A2TS	POPTR_0007s03670	POPTR_0007s03670 (10)//POPTR_0280s00210 (10)	scaffold_280:10375-10615(+) (10)//scaffold_7:2104509-2104749(+) (10)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os08g13870.1	"S-locus lectin protein kinase family protein, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224553.1.S1_s_at	A	A2TS	POPTR_0007s03670	POPTR_0007s03670 (11)//POPTR_0280s00210 (11)	scaffold_280:9843-10365(+) (11)//scaffold_7:2103977-2104499(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os08g13870.1	"S-locus lectin protein kinase family protein, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224554.1.S1_at	A	A1TS	POPTR_0007s03700	POPTR_0007s03700 (11)	scaffold_7:2118687-2119223(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os03g61310.1	"receptor-like protein kinase, putative, expressed"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224555.1.S1_at	A	A1TS	POPTR_0007s04750	POPTR_0007s04750 (11)	scaffold_7:2966529-2966998(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224556.1.S1_at	A	A1TS	POPTR_0007s04750	POPTR_0007s04750 (11)	scaffold_7:2969018-2969057(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224556.1.S1_s_at	A	A1TS	POPTR_0007s04750	POPTR_0007s04750 (11)	scaffold_7:2967684-2969569(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224557.1.S1_at	A	A1TS	POPTR_0007s05230	POPTR_0007s05230 (11)	scaffold_7:3365914-3366407(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr3g111140.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224559.1.S1_at	A	A1TS	POPTR_0007s05980	POPTR_0007s05980 (11)	scaffold_7:4127404-4128526(-) (11)	NA	Q0D4T4	MADS-box transcription factor 18	AT1G22130.1	AGAMOUS-like 104 	LOC_Os06g11970.1	"OsMADS63 - MADS-box family gene with MIKC* type-box, expressed"	AC235748_9.1	"Transcription factor, MADS-box AC235748.1 27637-29898 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.224561.1.S1_s_at	A	A4TS	POPTR_0007s07170	POPTR_0007s07190 (11)//POPTR_0007s07200 (11)//POPTR_0007s07170 (11)//POPTR_0007s07240 (11)	scaffold_7:5512289-5512788(+) (11)//scaffold_7:5519038-5519537(+) (11)//scaffold_7:5532635-5533134(+) (11)//scaffold_7:5561035-5561534(+) (11)//scaffold_7:5591190-5591688(-) (11)	POPTR_0007s07290 (8)	O65039	Vignain	AT5G45890.1	senescence-associated gene 12 	LOC_Os04g13090.1	"vignain precursor, putative"	Medtr5g022460.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224565.1.S1_at	A	A2TS	POPTR_0007s07360	POPTR_0007s07360 (11)//POPTR_0007s07410 (11)	scaffold_7:5698966-5699767(-) (11)//scaffold_7:5732833-5733634(-) (11)	NA	P59287	"Casbene synthase, chloroplastic"	AT5G23960.2	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.224566.1.S1_at	A	A1TS	POPTR_0007s07420	POPTR_0007s07420 (11)	scaffold_7:5763400-5763988(+) (11)	NA	O81974	Cytochrome P450 71D8	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr3g073770.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224567.1.S1_at	A	A1TS	POPTR_0007s07530	POPTR_0007s07530 (10)	scaffold_7:5889285-5889328(-) (10)	NA	Q9LT15	Sugar transport protein 10	AT3G19940.1	Major facilitator superfamily protein 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr5g089960.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.224567.1.S1_s_at	A	A3TS	POPTR_0007s07540	POPTR_0007s07550 (11)//POPTR_0007s07540 (11)//POPTR_0007s07530 (10)	scaffold_7:5889318-5889987(-) (10)//scaffold_7:5904748-5905391(-) (11)//scaffold_7:5915637-5916280(+) (11)	NA	Q9LT15	Sugar transport protein 10	AT3G19940.1	Major facilitator superfamily protein 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr5g089960.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.224569.1.S1_at	A	A1TS	POPTR_0007s07640	POPTR_0007s07640 (11)	scaffold_7:5998652-5999180(-) (11)	NA	Q9SX48	Sugar transport protein 9	AT1G50310.1	sugar transporter 9 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr5g089960.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.224570.1.S1_at	A	A1TS	POPTR_0007s08110	POPTR_0007s08110 (11)	scaffold_7:6589556-6590098(+) (11)	NA	Q6NQ83	"Pentatricopeptide repeat-containing protein At3g22470, mitochondrial"	AT3G22470.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g05920.1	"Rf1, mitochondrial precursor, putative, expressed"	Medtr6g089560.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224572.1.S1_at	A	A1TS	POPTR_0007s11200	POPTR_0007s11200 (11)	scaffold_7:11479744-11480760(-) (11)	NA	Q2MY58	Patatin group A-3	AT4G37070.2	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 	LOC_Os11g39990.1	"patatin, putative, expressed"	Medtr1g024960.2	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.224573.1.S1_at	A	A1TS	POPTR_0007s11860	POPTR_0007s11860 (11)	scaffold_7:12230606-12231186(-) (11)	NA	Q39786	Polygalacturonase	AT3G07820.1	Pectin lyase-like superfamily protein 	LOC_Os06g40880.1	"polygalacturonase, putative, expressed"	Medtr2g074020.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224574.1.S1_at	A	A1TS	POPTR_0007s12390	POPTR_0007s12390 (11)	scaffold_7:12706874-12707346(+) (11)	NA	Q40287	Anthocyanidin 3-O-glucosyltransferase 5	AT2G18570.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g43280.1	"hydroquinone glucosyltransferase, putative, expressed"	Medtr8g088810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224575.1.S1_at	A	A1TS	POPTR_0007s12400	POPTR_0007s12400 (11)	scaffold_7:12718998-12719466(+) (11)	NA	Q40287	Anthocyanidin 3-O-glucosyltransferase 5	AT3G50740.1	UDP-glucosyl transferase 72E1 	LOC_Os01g43280.1	"hydroquinone glucosyltransferase, putative, expressed"	Medtr5g019500.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224576.1.S1_at	A	A2TS	POPTR_0007s12410	POPTR_0007s12410 (11)//POPTR_0535s00230 (9)	scaffold_535:11466-12039(+) (11)//scaffold_7:12727843-12728416(+) (11)	NA	Q40287	Anthocyanidin 3-O-glucosyltransferase 5	AT3G50740.1	UDP-glucosyl transferase 72E1 	LOC_Os01g43280.1	"hydroquinone glucosyltransferase, putative, expressed"	Medtr5g019500.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224577.1.S1_at	A	A1TS	POPTR_0007s13050	POPTR_0007s13050 (11)	scaffold_7:13238089-13238763(+) (11)	NA	Q8VZA1	Laccase-11	AT5G03260.1	laccase 11 	LOC_Os01g44330.1	"laccase precursor protein, putative, expressed"	Medtr5g020510.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224578.1.S1_at	A	A1TS	POPTR_0007s13220	POPTR_0007s13220 (11)	scaffold_7:13335847-13336331(+) (11)	NA	Q9STS9	Putative pentatricopeptide repeat-containing protein At3g47840	AT3G47840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g50460.1	"pentatricopeptide, putative"	Medtr4g011410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224582.1.S1_at	A	A1MS	POPTR_0007s15190	POPTR_0007s15190 (9)	scaffold_7:14808082-14808843(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224583.1.S1_at	A	A1TS	POPTR_0007s15210	POPTR_0007s15210 (11)	scaffold_7:14836906-14837625(+) (11)	NA	P0C8Y0	Camelliol C synthase	AT1G78955.1	camelliol C synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.224588.1.S1_at	A	A1TS	POPTR_0008s02350	POPTR_0008s02350 (9)	scaffold_8:1128541-1128591(+) (9)//scaffold_8:1142821-1142871(+) (9)	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr5g098460.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224589.1.S1_at	A	A1TS	POPTR_0008s02480	POPTR_0008s02480 (11)	scaffold_8:1217765-1218471(+) (11)	NA	Q2PCF1	Pleiotropic drug resistance protein 2	AT1G66950.1	pleiotropic drug resistance 11 	LOC_Os02g11760.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr7g126900.1	PAK-box/P21-Rho-binding; AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.22459.2.S1_a_at	A	A1TS	POPTR_0015s13260	POPTR_0015s13260 (11)	scaffold_15:13295082-13295439(-) (11)	NA	Q9SN74	Transcription factor bHLH47	AT3G47640.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g43530.2	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g112550.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.224591.1.S1_at	A	A1TS	POPTR_0008s07010	POPTR_0008s07010 (11)	scaffold_8:4241623-4242635(+) (11)	NA	NA	NA	AT2G40160.1	Plant protein of unknown function (DUF828) 	LOC_Os05g28630.1	"leaf senescence related protein, putative, expressed"	Medtr5g090300.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224592.1.S1_at	A	A1TS	POPTR_0008s07020	POPTR_0008s07020 (11)	scaffold_8:4246420-4249584(+) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os01g61460.1	"leaf senescence related protein, putative, expressed"	Medtr3g094070.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224593.1.S1_at	A	A1TS	POPTR_0008s08180	POPTR_0008s08180 (9)	scaffold_8:5092897-5093463(+) (10)	NA	O81974	Cytochrome P450 71D8	AT5G25120.1	"ytochrome p450, family 71, subfamily B, polypeptide 11 "	LOC_Os06g43350.1	"cytochrome P450, putative, expressed"	Medtr5g018940.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224594.1.S1_at	A	A1MS	POPTR_0008s09060	POPTR_0008s09060 (10)	scaffold_8:5614404-5615027(-) (11)	NA	Q9P7S2	Probable 26S proteasome regulatory subunit rpn6	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr1g010040.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224595.1.S1_at	A	A1MS	POPTR_0008s09750	POPTR_0008s09750 (10)	scaffold_8:6027330-6028240(-) (10)	NA	Q94JW8	Squamosa promoter-binding-like protein 6	AT1G69170.1	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os09g32944.1	"OsSPL18 - SBP-box gene family member, expressed"	Medtr5g048960.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.224596.1.S1_at	A	A1TS	POPTR_0008s10270	POPTR_0008s10270 (11)	scaffold_8:6430055-6430770(-) (11)	NA	O23474	Peroxidase 40	AT4G16270.1	Peroxidase superfamily protein 	LOC_Os08g20730.1	"peroxidase precursor, putative, expressed"	Medtr8g136930.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.224597.1.S1_at	A	A1TS	POPTR_0008s10390	POPTR_0008s10390 (11)	scaffold_8:6501373-6503849(-) (11)	NA	Q0V7V2	Probable protein phosphatase 2C 42	AT3G17090.1	Protein phosphatase 2C family protein 	LOC_Os03g61690.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037990.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224599.1.S1_at	A	A2TS	POPTR_0008s11020	POPTR_0008s11020 (11)//POPTR_0243s00200 (10)	scaffold_243:717-1967(-) (10)//scaffold_8:6955664-6956909(+) (11)	NA	Q93ZF5	Phosphate transporter PHO1 homolog 1	AT1G68740.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr1g090210.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.2246.1.S1_at	A	A1TS	POPTR_0006s14170	POPTR_0006s14170 (10)	scaffold_6:11499728-11500236(-) (10)	NA	A7PZL3	Probable polygalacturonase	AT3G42950.1	Pectin lyase-like superfamily protein 	LOC_Os09g26800.1	"polygalacturonase, putative, expressed"	Medtr2g050070.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224600.1.S1_at	A	A1TS	POPTR_0008s12370	POPTR_0008s12370 (11)	scaffold_8:7981569-7981603(-) (11)	NA	NA	NA	AT2G01190.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os01g04650.1	"PB1 domain containing protein, expressed"	Medtr8g096190.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224601.1.S1_at	A	A1TS	POPTR_0008s12510	POPTR_0008s12510 (10)	scaffold_8:8100833-8101597(-) (10)	NA	Q39513	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os01g31760.1	"acyl-ACP thioesterase, putative"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224602.1.S1_at	A	A1TS	POPTR_0008s12750	POPTR_0008s12750 (11)	scaffold_8:8232257-8233211(+) (11)	NA	Q9SZP1	Transcription repressor MYB4	AT4G38620.1	myb domain protein 4 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224603.1.S1_at	A	A1TS	POPTR_0008s13160	POPTR_0008s13160 (11)	scaffold_8:8609096-8610586(+) (11)	NA	O65472	Putative cysteine-rich receptor-like protein kinase 12	AT1G70740.1	Protein kinase superfamily protein 	LOC_Os09g24330.1	"TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr1g035090.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224604.1.S1_at	A	A1TS	POPTR_0008s13560	POPTR_0008s13560 (11)	scaffold_8:8922905-8924347(-) (11)	NA	Q9FKD0	Probable S-adenosylmethionine-dependent methyltransferase At5g37970	AT1G68040.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g57080.1	"jasmonate O-methyltransferase, putative"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.224605.1.S1_at	A	A1TS	POPTR_0008s13570	POPTR_0008s13570 (11)	scaffold_8:8930675-8931279(-) (11)	NA	Q9LS10	Probable S-adenosylmethionine-dependent methyltransferase At5g38100	AT1G68040.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g57080.1	"jasmonate O-methyltransferase, putative"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.224606.1.S1_at	A	A1TS	POPTR_0008s16660	POPTR_0008s16660 (11)	scaffold_8:11206009-11207042(+) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT3G23250.1	myb domain protein 15 	LOC_Os02g41510.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224607.1.S1_s_at	A	A1TS	POPTR_0008s16930	POPTR_0008s16930 (11)	scaffold_8:11372909-11373503(-) (11)	NA	Q8S403	Phosphate transporter PHO1	AT3G23430.1	phosphate 1 	LOC_Os02g56510.1	"phosphate transporter 1, putative, expressed"	Medtr1g090210.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.224609.1.S1_at	A	A1TS	POPTR_0008s18110	POPTR_0008s18110 (11)	scaffold_8:12133940-12134495(+) (11)	NA	P80073	Myb-related protein Pp2	AT5G14340.1	myb domain protein 40 	LOC_Os09g36250.1	"MYB family transcription factor, putative, expressed"	Medtr5g085860.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22461.1.S1_at	A	A1TS	POPTR_0006s24970	POPTR_0006s24970 (11)	scaffold_6:23446775-23447216(-) (11)	NA	NA	NA	AT5G11730.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g52120.1	"DNA binding protein, putative, expressed"	Medtr2g005200.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.224610.1.S1_at	A	A1TS	POPTR_0008s18350	POPTR_0008s18350 (11)	scaffold_8:12318826-12319520(-) (11)	NA	P25803	Vignain	AT5G50260.1	Cysteine proteinases superfamily protein 	LOC_Os11g14900.5	"thiol protease SEN102 precursor, putative, expressed"	AC235753_6.1	"Peptidase C1A, papain; AC235753.1 34826-37135 E EGN_Mt090430 200"	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224611.1.S1_at	A	A1TS	POPTR_0008s18780	POPTR_0008s18780 (11)	scaffold_8:12800757-12800884(-) (11)	NA	O65786	Cytochrome P450 71B4	AT3G26280.1	"cytochrome P450, family 71, subfamily B, polypeptide 4 "	LOC_Os07g19210.1	"cytochrome P450, putative, expressed"	Medtr5g102020.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224611.1.S1_s_at	A	A2TS	POPTR_0008s18780	POPTR_0008s18780 (11)//POPTR_0008s18860 (9)	scaffold_8:12800783-12801347(-) (11)//scaffold_8:12870340-12870903(-) (11)	NA	O65786	Cytochrome P450 71B4	AT3G26280.1	"cytochrome P450, family 71, subfamily B, polypeptide 4 "	LOC_Os07g19210.1	"cytochrome P450, putative, expressed"	Medtr5g102020.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224612.1.S1_at	A	A1TS	POPTR_0008s18860	POPTR_0008s18860 (11)	scaffold_8:12870317-12870441(-) (11)	NA	Q9LTM4	Cytochrome P450 71B19	AT3G26170.1	"cytochrome P450, family 71, subfamily B, polypeptide 19 "	LOC_Os07g19210.1	"cytochrome P450, putative, expressed"	Medtr5g081490.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224613.1.S1_at	A	A1TS	POPTR_0008s19400	POPTR_0008s19400 (11)	scaffold_8:13341073-13341556(-) (11)	NA	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT1G70460.1	root hair specific 10 	LOC_Os06g29080.1	expressed protein	Medtr5g035520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224616.1.S1_at	A	A1TS	POPTR_0008s21040	POPTR_0008s21040 (10)	scaffold_8:15102866-15103271(-) (10)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224617.1.S1_at	A	A1TS	POPTR_0010s04510	POPTR_0010s04510 (11)	scaffold_10:5613319-5613629(-) (11)	NA	Q0WVK7	"Pentatricopeptide repeat-containing protein At1g05665, mitochondrial"	AT1G05670.2	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g32900.1	"PPR repeat containing protein, expressed"	Medtr4g157210.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224618.1.S1_at	A	A1MS	POPTR_0009s00515	POPTR_0009s00515 (9)	scaffold_9:369620-372577(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224619.1.S1_at	A	A1TS	POPTR_0010s00810	POPTR_0010s00810 (11)	scaffold_10:515677-516204(-) (11)	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78850.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23760.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.224620.1.S1_at	A	A1TS	POPTR_0010s01460	POPTR_0010s01460 (11)	scaffold_10:1590637-1590800(+) (11)	NA	P49062	Exopolygalacturonase clone GBGE184	AT1G02790.1	polygalacturonase 4 	LOC_Os06g31270.1	"polygalacturonase, putative"	Medtr1g108030.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224620.1.S1_s_at	A	A2TS	POPTR_0010s00940	POPTR_0010s00940 (11)//POPTR_0010s01460 (11)	scaffold_10:685708-686453(-) (11)//scaffold_10:1589930-1590771(+) (11)	NA	Q6H9K0	Exopolygalacturonase (Fragment)	AT1G02790.1	polygalacturonase 4 	LOC_Os06g31270.1	"polygalacturonase, putative"	Medtr1g108030.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224621.1.S1_at	A	A1TS	POPTR_0010s01470	POPTR_0010s01470 (11)	scaffold_10:1605092-1605853(+) (11)	NA	P49062	Exopolygalacturonase clone GBGE184	AT1G02790.1	polygalacturonase 4 	LOC_Os06g31270.1	"polygalacturonase, putative"	Medtr1g108030.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224622.1.S1_at	A	A1TS	POPTR_0010s01580	POPTR_0010s01580 (11)	scaffold_10:1801174-1801755(+) (11)	NA	NA	NA	AT5G49100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g32550.1	expressed protein	Medtr8g138570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224623.1.S1_s_at	A	A3TS	POPTR_0010s02000	POPTR_0010s02000 (11)//POPTR_0010s02030 (11)//POPTR_0044s00270 (11)	scaffold_10:2232679-2232753(-) (11)//scaffold_10:2308518-2308592(-) (11)//scaffold_44:132947-133021(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011200.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.224624.1.S1_s_at	A	A3TS	POPTR_0010s02000	POPTR_0010s02000 (11)//POPTR_0010s02030 (11)//POPTR_0044s00270 (11)	scaffold_10:2159598-2164605(-) (11)//scaffold_10:2232861-2233079(-) (11)//scaffold_10:2308700-2309013(-) (11)//scaffold_44:133129-133347(-) (11)	POPTR_0010s01930 (6)//POPTR_0010s01950 (6)	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011200.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.224625.1.S1_at	A	A2TS	POPTR_0010s08050	POPTR_0010s08050 (11)//POPTR_0465s00200 (9)	scaffold_10:9004016-9004955(-) (11)//scaffold_465:39-931(+) (10)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os10g04720.1	"TKL_IRAK_DUF26-la.5 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235005_21.1	Tyrosine protein kinase AC235005.1 68612-71230 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224626.1.S1_at	A	A1TS	POPTR_0010s07970	POPTR_0010s07970 (11)	scaffold_10:8959318-8959929(+) (11)	NA	Q8S403	Phosphate transporter PHO1	AT3G23430.1	phosphate 1 	LOC_Os02g56510.1	"phosphate transporter 1, putative, expressed"	Medtr1g090210.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.224627.1.S1_at	A	A1TS	POPTR_0010s07370	POPTR_0010s07370 (11)	scaffold_10:8447768-8448043(+) (11)	NA	NA	NA	AT4G17800.1	Predicted AT-hook DNA-binding family protein 	LOC_Os07g13100.1	"DNA binding protein, putative"	Medtr7g092530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224628.1.S1_at	A	A1TS	POPTR_0010s07140	POPTR_0010s07140 (11)	scaffold_10:8323403-8323437(+) (11)//scaffold_10:8344527-8344561(+) (11)	NA	P46421	Glutathione S-transferase 103-1A	AT2G29450.1	glutathione S-transferase tau  5 	LOC_Os10g38470.1	"glutathione S-transferase, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224628.1.S1_s_at	A	A3TS	POPTR_0010s07110	POPTR_0010s07140 (11)//POPTR_0010s07110 (11)//POPTR_0010s07200 (10)	scaffold_10:8315045-8315237(+) (11)//scaffold_10:8323447-8323639(+) (11)//scaffold_10:8344571-8344763(+) (11)	NA	P46421	Glutathione S-transferase 103-1A	AT2G29450.1	glutathione S-transferase tau  5 	LOC_Os10g38489.1	"glutathione S-transferase GSTU6, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224629.1.S1_s_at	A	A2TS	POPTR_0010s07100	POPTR_0010s07100 (11)//POPTR_0010s07130 (11)	scaffold_10:8313285-8313788(+) (11)//scaffold_10:8321641-8322141(+) (11)	NA	Q03662	Probable glutathione S-transferase	AT3G09270.1	glutathione S-transferase TAU 8 	LOC_Os05g34150.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224631.1.S1_s_at	A	A2MS	POPTR_0010s07100	POPTR_0010s07100 (11)//POPTR_0010s07110 (9)	scaffold_10:8313061-8313131(+) (11)//scaffold_10:8315341-8315379(+) (9)	NA	Q03662	Probable glutathione S-transferase	AT3G09270.1	glutathione S-transferase TAU 8 	LOC_Os05g34150.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224632.1.S1_at	A	A1TS	POPTR_0010s06880	POPTR_0010s06880 (9)	scaffold_10:8124347-8124805(-) (11)	NA	Q8GUQ5	Brassinosteroid LRR receptor kinase	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os01g41770.1	"leucine rich repeat protein, putative, expressed"	Medtr2g021180.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.224633.1.S1_s_at	A	A3TS	POPTR_0010s06640	POPTR_0010s06640 (11)//POPTR_0010s06650 (11)//POPTR_0468s00200 (11)	scaffold_10:7927477-7927763(-) (11)//scaffold_10:7946614-7946900(-) (11)//scaffold_468:3529-3815(+) (11)	NA	Q9FI40	BAHD acyltransferase At5g47980	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g10420.1	"transferase family domain containing protein, expressed"	Medtr5g092230.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.224634.1.S1_s_at	A	A2TS	POPTR_0010s06380	POPTR_0010s06380 (11)//POPTR_0010s06390 (10)	scaffold_10:7749021-7749551(+) (11)//scaffold_10:7781475-7782005(+) (10)	NA	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g70025.1	"transferase family protein, putative"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.224635.1.S1_at	A	A1TS	POPTR_0010s06080	POPTR_0010s06080 (9)	scaffold_10:7513459-7514403(+) (10)	NA	P25803	Vignain	AT5G50260.1	Cysteine proteinases superfamily protein 	LOC_Os08g44270.1	"vignain precursor, putative, expressed"	AC235753_6.1	"Peptidase C1A, papain; AC235753.1 34826-37135 E EGN_Mt090430 200"	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224637.1.S1_at	A	A1TS	POPTR_0010s05110	POPTR_0010s05110 (9)	scaffold_10:6525676-6527285(+) (9)	NA	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT1G70460.1	root hair specific 10 	LOC_Os06g29080.1	expressed protein	Medtr5g035520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224638.1.S1_s_at	A	A1TS	POPTR_0010s08640	POPTR_0010s08640 (11)	scaffold_10:9536726-9537134(+) (11)	NA	P24076	Glu S.griseus protease inhibitor	AT2G38870.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr1g090000.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.224640.1.S1_at	A	A1TS	POPTR_0010s08800	POPTR_0010s08800 (11)	scaffold_10:9628926-9629427(-) (11)	NA	Q9ZUU3	Pentatricopeptide repeat-containing protein At2g37230	AT2G37230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g02020.1	"pentatricopeptide, putative, expressed"	Medtr7g041080.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224642.1.S1_at	A	A1TS	POPTR_0010s09410	POPTR_0010s09410 (11)	scaffold_10:10245071-10245175(+) (11)	NA	Q9LUJ4	"Pentatricopeptide repeat-containing protein At3g22670, mitochondrial"	AT3G22670.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g53490.1	"PPR repeat containing protein, expressed"	Medtr5g006800.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224642.1.S1_s_at	A	A1TS	POPTR_0010s09410	POPTR_0010s09410 (11)	scaffold_10:10245193-10245602(+) (11)	NA	Q9LUJ4	"Pentatricopeptide repeat-containing protein At3g22670, mitochondrial"	AT3G22670.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g53490.1	"PPR repeat containing protein, expressed"	Medtr5g006800.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224644.1.S1_at	A	A1TS	POPTR_0010s10030	POPTR_0010s10030 (10)	scaffold_10:10623417-10624104(-) (11)	NA	Q9SBA7	Sugar transport protein 8	AT5G26250.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.224645.1.S1_at	A	A1TS	POPTR_0010s10940	POPTR_0010s10940 (11)	scaffold_10:11338573-11339145(+) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT2G02080.1	indeterminate(ID)-domain 4 	LOC_Os02g45054.1	"ZOS2-15 - C2H2 zinc finger protein, expressed"	Medtr1g039670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.224646.1.S1_at	A	A1TS	POPTR_0010s11390	POPTR_0010s11390 (11)	scaffold_10:11683666-11684200(+) (11)	NA	P17801	Putative receptor protein kinase ZmPK1	AT1G34300.1	lectin protein kinase family protein 	LOC_Os10g01100.1	"receptor-like protein kinase, putative, expressed"	Medtr3g034170.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224647.1.S1_at	A	A1TS	POPTR_0010s11550	POPTR_0010s11550 (11)	scaffold_10:11768605-11769613(-) (11)	NA	Q9LS10	Probable S-adenosylmethionine-dependent methyltransferase At5g38100	AT1G68040.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50480.1	"SAM dependent carboxyl methyltransferase, putative"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.224649.1.S1_at	A	A1TS	POPTR_0010s11990	POPTR_0010s11990 (11)	scaffold_10:12103258-12104292(-) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT1G70740.1	Protein kinase superfamily protein 	LOC_Os09g24330.1	"TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr1g035090.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224650.1.S1_s_at	A	A1TS	POPTR_0010s12420	POPTR_0010s12420 (11)	scaffold_10:12456925-12457211(-) (11)	NA	Q9SZP1	Transcription repressor MYB4	AT4G38620.1	myb domain protein 4 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224651.1.S1_at	A	A1MS	POPTR_0010s12760	POPTR_0010s12760 (10)	scaffold_10:12720281-12721627(+) (10)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os01g31760.1	"acyl-ACP thioesterase, putative"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224652.1.S1_s_at	A	A1TS	POPTR_0010s12950	POPTR_0010s12950 (11)	scaffold_10:12880888-12881331(+) (11)	NA	NA	NA	AT2G01190.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os01g04650.1	"PB1 domain containing protein, expressed"	Medtr8g096190.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224653.1.S1_s_at	A	A2TS	POPTR_0010s13080	POPTR_0010s13080 (11)//POPTR_0188s00240 (10)	scaffold_10:12979035-12979502(+) (11)//scaffold_188:25906-26565(-) (10)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G25390.1	Protein kinase superfamily protein 	LOC_Os01g04409.1	"OsWAK1 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr1g140420.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224655.1.S1_at	A	A1TS	POPTR_0010s13510	POPTR_0010s13510 (10)	scaffold_10:13331467-13331660(-) (10)	NA	Q9XF43	3-ketoacyl-CoA synthase 6	AT1G68530.1	3-ketoacyl-CoA synthase 6 	LOC_Os03g12030.1	"3-ketoacyl-CoA synthase, putative, expressed"	AC233660_47.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase AC233660.2 190599-188614 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.224655.1.S1_s_at	A	A1TS	POPTR_0010s13510	POPTR_0010s13510 (10)	scaffold_10:13331435-13331970(-) (10)	NA	Q9XF43	3-ketoacyl-CoA synthase 6	AT1G68530.1	3-ketoacyl-CoA synthase 6 	LOC_Os03g12030.1	"3-ketoacyl-CoA synthase, putative, expressed"	AC233660_47.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase AC233660.2 190599-188614 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.224656.1.S1_s_at	A	A1TS	POPTR_0010s14230	POPTR_0010s14230 (11)	scaffold_10:13908820-13910115(+) (11)	NA	Q93ZF5	Phosphate transporter PHO1 homolog 1	AT1G68740.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os06g29790.1	"phosphate transporter 1, putative, expressed"	Medtr1g090210.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.224657.1.S1_at	A	A1TS	POPTR_0010s15090	POPTR_0010s15090 (11)	scaffold_10:14455911-14457987(-) (11)	NA	O22264	Transcription factor MYB12	AT5G49330.1	myb domain protein 111 	LOC_Os01g19970.1	"MYB family transcription factor, putative, expressed"	Medtr2g038900.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224658.1.S1_at	A	A1TS	POPTR_0010s15660	POPTR_0010s15660 (11)	scaffold_10:14802477-14804739(+) (11)	NA	Q0V7V2	Probable protein phosphatase 2C 42	AT3G17090.1	Protein phosphatase 2C family protein 	LOC_Os03g61690.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037990.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224659.1.S1_at	A	A1TS	POPTR_0010s16400	POPTR_0010s16400 (11)	scaffold_10:15380654-15381131(+) (11)	NA	Q94JW8	Squamosa promoter-binding-like protein 6	AT1G69170.1	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr5g048960.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.224660.1.S1_at	A	A1TS	POPTR_0010s17730	POPTR_0010s17730 (11)	scaffold_10:16212491-16213861(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.224661.1.S1_at	A	A2TS	POPTR_0010s18510	POPTR_0010s18510 (11)//POPTR_0010s18500 (9)	scaffold_10:16724476-16731603(+) (11)//scaffold_10:16731092-16731566(+) (9)	NA	P48979	Polygalacturonase	AT1G65570.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr4g114910.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224662.1.S1_at	A	A1TS	POPTR_0010s19460	POPTR_0010s19460 (11)	scaffold_10:17356606-17358040(-) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr3g094070.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224663.1.S1_at	A	A1TS	POPTR_0010s19480	POPTR_0010s19480 (11)	scaffold_10:17365804-17365884(-) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224663.1.S1_s_at	A	A1TS	POPTR_0010s19480	POPTR_0010s19480 (11)	scaffold_10:17365063-17365573(-) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224664.1.S1_at	A	A1TS	POPTR_0010s20390	POPTR_0010s20390 (11)	scaffold_10:18001298-18001989(-) (11)	NA	Q39547	Cucumisin	AT5G59190.1	subtilase family protein 	LOC_Os04g48416.1	"OsSub45 - Putative Subtilisin homologue, expressed"	Medtr7g083510.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.224665.1.S1_at	A	A2TS	POPTR_0010s20420	POPTR_0010s20420 (11)//POPTR_0010s20400 (9)	scaffold_10:18006635-18017148(-) (11)//scaffold_10:18016447-18016479(-) (9)	NA	Q39547	Cucumisin	AT5G59100.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os01g52750.1	"OsSub3 - Putative Subtilisin homologue, expressed"	AC233100_30.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide; Peptidase S8A, bacillopeptidase F AC233100.6 99564-105523 E EGN_Mt090430 200"	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.224666.1.S1_at	A	A1TS	POPTR_0010s20820	POPTR_0010s20820 (11)	scaffold_10:18268673-18269155(+) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G55550.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os12g38610.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224667.1.S1_at	A	A1TS	POPTR_0010s20835	POPTR_0010s20835 (11)	scaffold_10:18279168-18279774(-) (11)	NA	NA	NA	AT4G15020.2	hAT transposon superfamily 	LOC_Os03g60800.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	GO:0003677|DNA binding	NA
PtpAffx.224668.1.S1_at	A	A1TS	POPTR_0010s22820	POPTR_0010s22820 (11)	scaffold_10:19591928-19593036(-) (11)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G16670.1	Protein kinase superfamily protein 	LOC_Os12g41710.1	"Protein kinase domain containing protein, expressed"	Medtr2g077080.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224669.1.S1_at	A	A1TS	POPTR_0010s23490	POPTR_0010s23490 (11)	scaffold_10:20049484-20050275(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g29790.1	"receptor kinase, putative"	Medtr5g026130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.22467.1.S1_at	A	A1TS	POPTR_0014s03370	POPTR_0014s03370 (10)	scaffold_14:2700291-2700823(-) (10)	NA	NA	NA	AT4G11800.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os07g01540.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	AC235663_25.1	"protein serine/threonine phosphatase, putative AC235663.1 114531-114698 E EGN_Mt090430 200"	NA	GO:0016787|hydrolase activity	NA
PtpAffx.224670.1.S1_at	A	A1TS	POPTR_0010s23500	POPTR_0010s23500 (11)	scaffold_10:20056643-20057165(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g36090.1	"receptor kinase, putative, expressed"	Medtr5g026130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224671.1.S1_at	A	A1TS	POPTR_0010s23530	POPTR_0010s23530 (11)	scaffold_10:20078305-20078555(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12400.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g047370.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224673.1.S1_at	A	A1TS	POPTR_0010s23860	POPTR_0010s23860 (11)	scaffold_10:20323860-20324675(+) (11)	NA	Q7TMR0	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os06g43930.1	"OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.224674.1.S1_at	A	A1TS	POPTR_0010s25770	POPTR_0010s25770 (11)	scaffold_10:21285074-21285600(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g38340.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr3g024750.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.224675.1.S1_s_at	A	A1MS	POPTR_0010s25450	POPTR_0010s25450 (11)	scaffold_10:21128771-21129764(-) (11)	NA	P48979	Polygalacturonase	AT2G43870.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr4g114910.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224676.1.S1_at	A	A1TS	POPTR_0021s00880	POPTR_0021s00880 (11)	scaffold_21:534800-537680(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G11670.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr5g034470.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.224677.1.S1_at	A	A1TS	POPTR_0021s00860	POPTR_0021s00860 (11)	scaffold_21:526218-527433(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G21690.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr5g034470.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.224678.1.S1_at	A	A1TS	POPTR_0021s00810	POPTR_0021s00810 (11)	scaffold_21:475114-477433(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G21690.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr5g034470.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.224679.1.S1_at	A	A1TS	POPTR_0021s00700	POPTR_0021s00700 (11)	scaffold_21:380948-381494(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os04g23760.1	"lectin protein kinase family protein, putative"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224680.1.S1_at	A	A1TS	POPTR_0021s00680	POPTR_0021s00680 (11)	scaffold_21:368133-368445(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os04g23700.1	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224682.1.S1_x_at	A	A1TS	POPTR_0011s01400	POPTR_0011s01400 (11)	scaffold_11:977735-987293(+) (11)	POPTR_0011s00210 (7)	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr7g105900.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224685.1.S1_x_at	A	A1MS	POPTR_0011s01840	POPTR_0011s01840 (11)	scaffold_11:1433180-1441714(+) (11)	POPTR_0011s01705 (7)	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g41540.3	"disease resistance RPP8-like protein 3, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.224689.1.S1_at	A	A1TS	POPTR_0011s01050	POPTR_0011s01050 (11)	scaffold_11:553365-553939(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025550.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224689.1.S1_x_at	A	A1TS	POPTR_0011s01050	POPTR_0011s01050 (11)	scaffold_11:553365-553939(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025550.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224690.1.S1_at	A	A1TS	POPTR_0011s01010	POPTR_0011s01010 (11)	scaffold_11:530033-530234(+) (11)	NA	NA	NA	AT4G14390.1	Ankyrin repeat family protein 	NA	NA	Medtr2g025550.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224690.1.S1_x_at	A	A1TS	POPTR_0011s01010	POPTR_0011s01010 (11)	scaffold_11:530033-530405(+) (11)	NA	NA	NA	AT4G14390.1	Ankyrin repeat family protein 	NA	NA	Medtr2g025550.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224692.1.S1_at	A	A1TS	POPTR_0011s00990	POPTR_0011s00990 (11)	scaffold_11:520930-521502(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g021630.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224692.1.S1_x_at	A	A1TS	POPTR_0011s00990	POPTR_0011s00990 (11)	scaffold_11:520930-521502(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g021630.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224693.1.S1_s_at	A	A3TS	POPTR_0011s00280	POPTR_0019s09150 (11)//POPTR_0011s00280 (11)//POPTR_1748s00200 (11)	scaffold_11:75875-76171(-) (11)//scaffold_1748:3370-3666(-) (11)//scaffold_19:10701092-10701388(-) (11)	NA	Q43735	Peroxidase 27	AT3G01190.1	Peroxidase superfamily protein 	LOC_Os11g43980.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.224694.1.S1_at	A	A2TS	POPTR_0017s09080	POPTR_0017s09080 (11)//POPTR_1009s00210 (9)	scaffold_1009:2997-3248(+) (10)//scaffold_17:7761854-7762250(+) (11)	POPTR_0017s09110 (8)	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35260.1	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224695.1.S1_at	A	A1TS	POPTR_0017s09120	POPTR_0017s09120 (11)	scaffold_17:7788787-7789788(+) (11)	POPTR_0017s09080 (8)	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35300.1	"TKL_IRAK_DUF26-lc.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224695.1.S1_s_at	A	A3TS	POPTR_0017s09080	POPTR_0017s09100 (11)//POPTR_0017s09120 (11)//POPTR_0017s09080 (11)	scaffold_17:7759969-7761082(+) (11)//scaffold_17:7778134-7779240(+) (11)//scaffold_17:7788809-7789896(+) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35260.1	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224696.1.S1_s_at	A	A2TS	POPTR_0017s09160	POPTR_0017s09160 (11)//POPTR_0017s09140 (9)	scaffold_17:7805962-7806776(+) (9)//scaffold_17:7821324-7822129(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os05g41370.1	"TKL_IRAK_DUF26-la.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224697.1.S1_at	A	A1TS	POPTR_0017s09180	POPTR_0017s09180 (11)	scaffold_17:7836240-7837047(+) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35310.1	"TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224699.1.S1_at	A	A1TS	POPTR_0017s09260	POPTR_0017s09260 (11)	scaffold_17:7885315-7886163(+) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35370.1	"TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224701.1.S1_s_at	A	A2TS	POPTR_0011s03270	POPTR_0017s09270 (11)//POPTR_0011s03270 (11)	scaffold_11:3411846-3412703(+) (11)//scaffold_17:7903970-7904831(+) (11)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os07g35290.1	"TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr1g025630.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224702.1.S1_s_at	A	A2TS	POPTR_0011s03220	POPTR_0011s03280 (11)//POPTR_0011s03220 (11)	scaffold_11:3380425-3380924(+) (11)//scaffold_11:3436088-3436587(+) (11)	NA	Q8H199	Cysteine-rich receptor-like protein kinase 14	AT4G23220.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 14 	LOC_Os07g35310.1	"TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224704.1.S1_at	A	A2TS	POPTR_0011s03230	POPTR_0011s03230 (11)//POPTR_0011s03290 (11)	scaffold_11:3383940-3384013(-) (11)//scaffold_11:3440213-3440286(-) (11)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os07g35290.1	"TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224706.1.S1_at	A	A1MS	POPTR_0017s09360	POPTR_0017s09360 (11)	scaffold_17:7975808-7976327(+) (11)	NA	Q8H199	Cysteine-rich receptor-like protein kinase 14	AT4G23220.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 14 	LOC_Os07g35370.1	"TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224708.1.S1_x_at	A	A1TS	POPTR_0011s04010	POPTR_0011s04010 (11)	scaffold_11:4073411-4074636(+) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT4G38620.1	myb domain protein 4 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr2g103070.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224709.1.S1_s_at	A	A2TS	POPTR_0011s03930	POPTR_0011s03930 (11)//POPTR_0608s00200 (11)	scaffold_11:3990894-3991594(-) (11)//scaffold_608:413-1118(-) (11)	NA	Q9SXB5	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11305	AT1G11300.1	protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding 	LOC_Os09g37880.1	"serine/threonine-protein kinase receptor precursor, putative"	Medtr8g015070.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224710.1.S1_s_at	A	A2TS	POPTR_0011s03920	POPTR_0011s03920 (11)//POPTR_0011s03910 (9)	scaffold_11:3979596-3985725(-) (11)//scaffold_11:3985337-3986056(-) (9)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.2	S-locus lectin protein kinase family protein 	LOC_Os07g36590.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224711.1.S1_at	A	A1TS	POPTR_0011s03910	POPTR_0011s03910 (11)	scaffold_11:3982604-3982643(-) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224711.1.S1_s_at	A	A1TS	POPTR_0011s03910	POPTR_0011s03910 (11)	scaffold_11:3982057-3982616(-) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224715.1.S1_s_at	A	A1TS	POPTR_0011s03900	POPTR_0011s03900 (11)	scaffold_11:3972274-3972905(-) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36590.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011330.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224716.1.S1_x_at	A	A1TS	POPTR_0011s03880	POPTR_0011s03880 (11)	scaffold_11:3956431-3967076(-) (11)//scaffold_1823:20-450(+) (9)	POPTR_0011s03820 (8)	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224717.1.S1_x_at	A	A1TS	POPTR_0011s03850	POPTR_0011s03850 (9)	scaffold_11:3936487-3936533(-) (9)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224718.1.S1_x_at	A	A1MS	POPTR_0011s03870	POPTR_0011s03870 (10)	scaffold_11:3957031-3957742(-) (10)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011330.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224720.1.S1_s_at	A	A2TS	POPTR_0006s22670	POPTR_0011s03850 (11)//POPTR_0006s22670 (11)	scaffold_11:3899805-3899925(-) (9)//scaffold_11:3934021-3934140(-) (11)//scaffold_6:21613140-21613259(+) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224721.1.S1_s_at	A	A4TS	POPTR_0006s22670	POPTR_0011s03830 (10)//POPTR_0011s03810 (10)//POPTR_0011s03850 (10)//POPTR_0006s22670 (10)	scaffold_11:3866356-3866389(-) (10)//scaffold_11:3900055-3900088(-) (10)//scaffold_11:3934270-3934303(-) (10)//scaffold_6:21612977-21613010(+) (10)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224722.1.S1_at	A	A1TS	POPTR_0011s03790	POPTR_0011s03790 (11)	scaffold_11:3847927-3848635(-) (11)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr4g124620.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224723.1.S1_at	A	A1TS	POPTR_0011s03750	POPTR_0011s03750 (11)	scaffold_11:3821793-3822214(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011200.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224724.1.S1_at	A	A1TS	POPTR_0011s03740	POPTR_0011s03740 (9)	scaffold_11:3819397-3819969(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os04g54110.1	"ARK3, putative"	Medtr2g011200.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.224725.1.S1_at	A	A1TS	POPTR_0011s03740	POPTR_0011s03740 (11)	scaffold_11:3818067-3818675(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os04g54110.1	"ARK3, putative"	Medtr2g011200.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.224726.1.S1_at	A	A1TS	POPTR_0011s03700	POPTR_0011s03700 (11)	scaffold_11:3789284-3789542(-) (11)	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124550.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.224726.1.S1_x_at	A	A1TS	POPTR_0011s03700	POPTR_0011s03700 (11)	scaffold_11:3789284-3789601(-) (11)	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124550.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.22473.1.A1_a_at	A	A1TS	POPTR_0019s09650	POPTR_0019s09650 (11)	scaffold_19:11266471-11266629(-) (11)	NA	NA	NA	AT1G71310.1	cobalt ion binding 	LOC_Os01g65560.1	"snRK1-interacting protein 1, putative, expressed"	Medtr4g041390.1	"SnRK1-interacting protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22473.2.A1_a_at	A	A1TS	POPTR_0019s09650	POPTR_0019s09650 (11)	scaffold_19:11263759-11265935(-) (11)	NA	NA	NA	AT1G71310.1	cobalt ion binding 	LOC_Os01g65560.1	"snRK1-interacting protein 1, putative, expressed"	Medtr4g041390.1	"SnRK1-interacting protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224730.1.S1_x_at	A	A1TS	POPTR_0011s03670	POPTR_0011s03670 (11)	scaffold_11:1801029-1826547(-) (10)//scaffold_11:3763534-3764070(-) (11)	POPTR_0011s02150 (8)	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124540.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	NA	GO:0005529|sugar binding	NA
PtpAffx.224731.1.S1_at	A	A2TS	POPTR_0011s03610	POPTR_0011s03650 (11)//POPTR_0011s03610 (11)	scaffold_11:3706246-3706722(+) (11)//scaffold_11:3746754-3747230(+) (11)	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os04g54070.1	"receptor-like kinase, putative"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224732.1.S1_at	A	A1TS	POPTR_0011s03600	POPTR_0011s03600 (11)	scaffold_11:3668659-3669351(-) (11)	NA	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT4G21380.1	receptor kinase 3 	LOC_Os01g57510.1	"receptor protein kinase, putative, expressed"	Medtr4g124540.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224733.1.S1_at	A	A1TS	POPTR_0011s03590	POPTR_0011s03590 (10)	scaffold_11:3663131-3663616(-) (10)	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os01g57490.1	D-mannose binding lectin family protein	Medtr4g124460.1	"EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	NA	GO:0005529|sugar binding	NA
PtpAffx.224734.1.S1_at	A	A1TS	POPTR_0011s03330	POPTR_0011s03330 (11)	scaffold_11:3473635-3474088(+) (11)	NA	Q9T058	G-type lectin S-receptor-like serine/threonine-protein kinase At4g11900	AT4G11900.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr4g124620.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224735.1.S1_s_at	A	A3TS	POPTR_0011s03230	POPTR_0011s03230 (11)//POPTR_0011s03290 (11)//POPTR_0017s09250 (9)	scaffold_11:3384052-3384753(-) (11)//scaffold_11:3440325-3441026(-) (11)//scaffold_17:7878476-7879177(+) (9)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os07g35290.1	"TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224738.1.S1_s_at	A	A1TS	POPTR_0004s08880	POPTR_0004s08880 (11)	scaffold_1:3705009-3705044(-) (11)//scaffold_1:14726122-14726157(+) (11)//scaffold_1:18589119-18589154(-) (11)//scaffold_1:39354798-39354831(-) (10)//scaffold_1:40319648-40319683(+) (11)//scaffold_1:40333481-40333516(+) (11)//scaffold_10:87747-87782(+) (11)//scaffold_10:4963709-4963744(-) (11)//scaffold_10:14705835-14705870(-) (11)//scaffold_11:2957052-2957087(+) (11)//scaffold_11:4771748-4771783(+) (11)//scaffold_11:7645100-7645135(-) (11)//scaffold_11:13803656-13803691(-) (11)//scaffold_12:2569432-2569467(-) (11)//scaffold_13:9428744-9428779(-) (11)//scaffold_13:10046761-10046796(+) (11)//scaffold_14:4378916-4378951(-) (11)//scaffold_17:8586167-8586202(-) (11)//scaffold_17:12779782-12779817(+) (11)//scaffold_17:13309950-13309985(+) (11)//scaffold_18:5813719-5813754(+) (11)//scaffold_18:7629955-7629990(-) (11)//scaffold_18:9453232-9453267(+) (11)//scaffold_19:8672950-8672985(+) (11)//scaffold_2:5116835-5116870(+) (11)//scaffold_2:17723334-17723369(-) (10)//scaffold_3:6696889-6696924(+) (10)//scaffold_4:7459438-7459473(+) (11)//scaffold_4:8556207-8556242(+) (11)//scaffold_5:4212687-4212722(-) (11)//scaffold_5:18963675-18963710(-) (11)//scaffold_6:10808408-10808443(+) (9)//scaffold_638:4425-4460(+) (10)//scaffold_7:7397848-7397883(-) (11)//scaffold_7:7891254-7891289(-) (11)//scaffold_7:7946267-7946302(+) (11)//scaffold_773:6058-6093(-) (11)//scaffold_8:13691309-13691344(-) (11)//scaffold_8:14262567-14262602(+) (11)	NA	NA	NA	AT4G15020.2	hAT transposon superfamily 	LOC_Os09g32380.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	GO:0003677|DNA binding	NA
PtpAffx.224739.1.S1_at	A	A1TS	POPTR_0011s03070	POPTR_0011s03070 (11)	scaffold_11:3084494-3085143(-) (11)	NA	O65351	Subtilisin-like protease	AT5G45650.1	subtilase family protein 	LOC_Os01g52750.1	"OsSub3 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.224742.1.S1_at	A	A2TS	POPTR_0011s08735	POPTR_0011s08735 (11)//POPTR_0040s00204 (9)	scaffold_11:10830557-10830907(-) (11)//scaffold_40:147734-148084(-) (10)	POPTR_0002s07100 (8)//POPTR_0002s08115 (7)//POPTR_0014s16055 (7)//POPTR_0001s19350 (6)	NA	NA	AT4G15020.2	hAT transposon superfamily 	LOC_Os03g60800.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	GO:0003677|DNA binding	NA
PtpAffx.224743.1.S1_at	A	A4MS	POPTR_0011s06590	POPTR_0011s06590 (11)//POPTR_0122s00200 (10)//POPTR_0011s06540 (9)//POPTR_0011s03200 (9)	scaffold_11:3329583-3329772(-) (9)//scaffold_11:7010993-7011182(-) (9)//scaffold_11:7118345-7118548(-) (11)//scaffold_122:37129-37331(-) (10)	POPTR_0011s06450 (8)//POPTR_0011s06230 (8)//POPTR_0011s06270 (7)//POPTR_0011s06610 (7)//POPTR_0011s06500 (6)//POPTR_0011s06350 (6)	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29730.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g12030.1	"receptor-like protein kinase precursor, putative"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.224744.1.S1_at	A	A2TS	POPTR_0011s06710	POPTR_0011s06710 (11)//POPTR_0122s00210 (11)	scaffold_11:7360157-7360265(-) (11)//scaffold_122:70007-70115(-) (11)	POPTR_0011s06240 (6)	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.1	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr4g136230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224744.1.S1_x_at	A	A2TS	POPTR_0011s06710	POPTR_0011s06710 (11)//POPTR_0122s00210 (11)	scaffold_11:7360157-7360294(-) (11)//scaffold_122:70007-70144(-) (11)	POPTR_0011s06240 (6)	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.1	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr4g136230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224745.1.S1_at	A	A1TS	POPTR_0011s06740	POPTR_0011s06740 (11)	scaffold_11:7396737-7396911(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224745.1.S1_x_at	A	A1TS	POPTR_0011s06740	POPTR_0011s06740 (11)	scaffold_11:7395962-7396911(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224746.1.S1_s_at	A	A1TS	POPTR_0011s07310	POPTR_0011s07310 (11)	scaffold_11:8064775-8065273(-) (11)	NA	P25776	Oryzain alpha chain	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os05g43230.1	"oryzain alpha chain precursor, putative, expressed"	Medtr1g068320.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224747.1.S1_at	A	A1TS	POPTR_0011s07370	POPTR_0011s07370 (11)	scaffold_11:8225206-8225802(-) (11)	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78820.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os02g13965.1	"lectin protein kinase family protein, putative, expressed"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.224748.1.S1_at	A	A1TS	POPTR_0011s07520	POPTR_0011s07520 (11)	scaffold_11:8366111-8366833(+) (11)	NA	O65039	Vignain	AT5G45890.1	senescence-associated gene 12 	LOC_Os04g13090.1	"vignain precursor, putative"	Medtr5g022460.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224749.1.S1_at	A	A1TS	POPTR_0011s07770	POPTR_0011s07770 (11)	scaffold_11:8618551-8618977(+) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g26000.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.224749.1.S1_s_at	A	A5TS	POPTR_0011s07770	POPTR_0011s07800 (11)//POPTR_0022s00920 (11)//POPTR_0011s07780 (11)//POPTR_0011s07770 (11)//POPTR_0011s07760 (9)	scaffold_11:8605412-8605855(+) (9)//scaffold_11:8618770-8619191(+) (11)//scaffold_11:8662530-8662951(+) (11)//scaffold_11:8689334-8689734(+) (11)//scaffold_22:599933-600354(-) (11)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g26000.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.224750.1.S1_s_at	A	A4TS	POPTR_0011s07770	POPTR_0011s07800 (11)//POPTR_0011s07780 (11)//POPTR_0011s07770 (11)//POPTR_0022s00920 (9)	scaffold_11:8616164-8616448(+) (11)//scaffold_11:8659128-8659412(+) (11)//scaffold_11:8687036-8687320(+) (11)//scaffold_22:602439-602723(-) (10)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g26000.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.224753.1.S1_at	A	A1TS	POPTR_0011s10870	POPTR_0011s10870 (11)	scaffold_11:13419002-13421020(-) (11)	NA	Q9FQ08	ATP-dependent DNA helicase 2 subunit KU70	AT1G16970.1	KU70 homolog 	LOC_Os07g08729.1	"ATP-dependent DNA helicase 2 subunit 1, putative, expressed"	Medtr1g147380.1	"Ku70/Ku80, N-terminal alpha/beta "	GO:0006303|double-strand break repair via nonhomologous end joining||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004003|ATP-dependent DNA helicase activity	GO:0005634|nucleus
PtpAffx.224754.1.S1_at	A	A1TS	POPTR_0011s11330	POPTR_0011s11330 (11)	scaffold_11:14055602-14057712(+) (11)	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT1G16670.1	Protein kinase superfamily protein 	LOC_Os02g06930.2	"protein kinase, putative, expressed"	Medtr2g077070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224756.1.S1_s_at	A	A2TS	POPTR_0011s11810	POPTR_0131s00210 (11)//POPTR_0011s11810 (11)	scaffold_11:14608052-14609389(+) (11)//scaffold_131:11869-13226(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G23560.1	MATE efflux family protein 	LOC_Os07g31884.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.224757.1.S1_at	A	A2TS	POPTR_0011s11810	POPTR_0131s00210 (11)//POPTR_0011s11810 (11)	scaffold_11:14608245-14608576(+) (11)//scaffold_131:12062-12393(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G23560.1	MATE efflux family protein 	LOC_Os07g31884.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.224758.1.S1_at	A	A1TS	POPTR_0011s12470	POPTR_0011s12470 (11)	scaffold_11:15205721-15206264(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224760.1.S1_at	A	A1TS	POPTR_0011s12620	POPTR_0011s12620 (10)	scaffold_11:15316545-15316953(-) (10)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224761.1.S1_at	A	A1TS	POPTR_0011s12630	POPTR_0011s12630 (11)	scaffold_11:15323304-15323954(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224762.1.S1_at	A	A2TS	POPTR_0011s12840	POPTR_0011s13040 (11)//POPTR_0011s12840 (11)	scaffold_11:15548039-15548137(+) (11)//scaffold_11:15764662-15764760(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021290.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224763.1.S1_at	A	A2TS	POPTR_0011s12870	POPTR_0011s13060 (11)//POPTR_0011s12870 (11)	scaffold_11:15561246-15562023(+) (11)//scaffold_11:15772526-15773304(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224763.1.S1_x_at	A	A2TS	POPTR_0011s12870	POPTR_0011s13060 (11)//POPTR_0011s12870 (11)	scaffold_11:15561246-15562050(+) (11)//scaffold_11:15772526-15773331(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224764.1.S1_at	A	A1TS	POPTR_0011s12880	POPTR_0011s12880 (11)	scaffold_11:15566760-15567509(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224766.1.S1_at	A	A2TS	POPTR_0118s00210	POPTR_0118s00240 (11)//POPTR_0118s00210 (11)	scaffold_118:3332-3927(-) (11)//scaffold_118:67349-67946(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g095790.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224767.1.S1_at	A	A1TS	POPTR_0011s12950	POPTR_0011s12950 (11)	scaffold_11:15656655-15657187(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020990.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224768.1.S1_at	A	A3TS	POPTR_0011s12980	POPTR_0011s12980 (11)//POPTR_1077s00200 (11)//POPTR_0011s12970 (10)	scaffold_1077:8718-8754(-) (11)//scaffold_11:15668613-15668648(-) (10)//scaffold_11:15700609-15700645(-) (11)	POPTR_0011s13150 (6)	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.224768.1.S1_x_at	A	A4TS	POPTR_0011s12980	POPTR_0011s12980 (11)//POPTR_1077s00200 (11)//POPTR_0011s13150 (9)//POPTR_0011s12970 (9)	scaffold_1077:8718-9121(-) (11)//scaffold_11:15668614-15668930(-) (9)//scaffold_11:15700609-15701012(-) (11)//scaffold_11:15864458-15864859(-) (9)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.224769.1.S1_at	A	A1TS	POPTR_0011s13000	POPTR_0011s13000 (9)	scaffold_11:15708031-15709419(-) (9)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020890.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224769.1.S1_x_at	A	A1TS	POPTR_0011s13000	POPTR_0011s13000 (10)	scaffold_11:15708031-15709419(-) (10)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020890.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224770.1.S1_at	A	A1TS	POPTR_0011s13130	POPTR_0011s13130 (11)	scaffold_11:15838939-15839442(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224771.1.S1_s_at	A	A4TS	POPTR_0011s12970	POPTR_0011s13150 (11)//POPTR_0011s12970 (11)//POPTR_1077s00200 (11)//POPTR_0011s12980 (9)	scaffold_1077:8868-9335(-) (11)//scaffold_11:15668762-15669229(-) (11)//scaffold_11:15700759-15701226(-) (11)//scaffold_11:15864606-15865073(-) (11)	POPTR_0011s13170 (8)	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224772.1.S1_at	A	A1TS	POPTR_0011s13180	POPTR_0011s13180 (10)	scaffold_11:15885413-15885864(-) (10)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224773.1.S1_s_at	A	A2TS	POPTR_0011s13190	POPTR_0011s13220 (11)//POPTR_0011s13190 (11)	scaffold_11:15891719-15892401(-) (11)//scaffold_11:15919920-15920602(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020990.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224775.1.S1_at	A	A1TS	POPTR_0011s13240	POPTR_0011s13240 (11)	scaffold_11:15939580-15939971(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224776.1.S1_at	A	A1TS	POPTR_0011s13260	POPTR_0011s13260 (11)	scaffold_11:15955983-15956771(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020990.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224777.1.S1_at	A	A1TS	POPTR_0011s13300	POPTR_0011s13300 (10)	scaffold_11:16010973-16011443(+) (10)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g111460.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224778.1.S1_x_at	A	A2TS	POPTR_0011s13430	POPTR_0011s13430 (11)//POPTR_0206s00200 (11)	scaffold_11:16175205-16175549(+) (11)//scaffold_206:259-603(+) (11)	NA	O81974	Cytochrome P450 71D8	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os01g27890.1	"cytochrome P450, putative, expressed"	Medtr3g073880.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224780.1.S1_s_at	A	A3TS	POPTR_0011s13430	POPTR_0011s13430 (11)//POPTR_0206s00230 (11)//POPTR_0206s00240 (10)	scaffold_11:16174603-16175097(+) (11)//scaffold_206:32477-32960(+) (11)//scaffold_206:41092-41595(+) (11)	NA	O81974	Cytochrome P450 71D8	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os01g27890.1	"cytochrome P450, putative, expressed"	Medtr3g073880.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224781.1.S1_at	A	A1TS	POPTR_0011s13660	POPTR_0011s13660 (11)	scaffold_11:16357132-16357168(-) (11)//scaffold_11:16391744-16391780(-) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G03670.1	ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224783.1.S1_s_at	A	A3TS	POPTR_0011s13660	POPTR_0011s13710 (11)//POPTR_0011s13670 (11)//POPTR_0011s13660 (11)	scaffold_11:16357574-16358062(-) (11)//scaffold_11:16364631-16365119(-) (11)//scaffold_11:16392186-16392715(-) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G03670.1	ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224784.1.S1_at	A	A1TS	POPTR_0011s14010	POPTR_0011s14010 (11)	scaffold_11:16604232-16604703(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT3G20530.1	Protein kinase superfamily protein 	LOC_Os02g30900.1	"protein kinase domain containing protein, expressed"	Medtr5g099440.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224785.1.S1_at	A	A1TS	POPTR_0011s14420	POPTR_0011s14420 (11)	scaffold_11:16836486-16837159(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g47180.1	"receptor-like protein kinase 2 precursor, putative, expressed"	AC233576_1.1	Protein kinase; AC233576.2 1048-3881 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224786.1.S1_at	A	A1TS	POPTR_0011s14430	POPTR_0011s14430 (10)	scaffold_11:16843664-16843957(+) (10)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g07225.1	conserved hypothetical protein	Medtr5g026330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224787.1.S1_at	A	A1TS	POPTR_0011s14530	POPTR_0011s14530 (11)	scaffold_11:16891158-16892510(-) (11)	NA	C0LGH2	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	AT1G16670.1	Protein kinase superfamily protein 	LOC_Os02g06930.2	"protein kinase, putative, expressed"	Medtr2g077070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224789.1.S1_s_at	A	A2TS	POPTR_0011s15600	POPTR_0011s15610 (11)//POPTR_0011s15600 (11)	scaffold_11:17677640-17678972(-) (11)//scaffold_11:17683851-17685233(-) (11)	NA	A1L4Y2	Alcohol dehydrogenase-like 3	AT1G32780.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os10g07229.1	"dehydrogenase, putative, expressed"	Medtr3g025530.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224790.1.S1_at	A	A1TS	POPTR_0011s15950	POPTR_0011s15950 (11)	scaffold_11:17945508-17946033(-) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20800.1	FAD-binding Berberine family protein 	LOC_Os06g35700.1	"reticuline oxidase-like protein precursor, putative, expressed"	Medtr4g125010.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224791.1.S1_s_at	A	A1TS	POPTR_0011s16120	POPTR_0011s16120 (11)	scaffold_11:18055361-18055638(-) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44440.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224792.1.S1_at	A	A1TS	POPTR_0011s16130	POPTR_0011s16130 (11)	scaffold_11:18063565-18064033(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44440.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224793.1.S1_s_at	A	A1TS	POPTR_0011s16140	POPTR_0011s16140 (11)	scaffold_11:18074936-18075459(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44390.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224794.1.S1_at	A	A1MS	POPTR_0011s16150	POPTR_0011s16150 (10)	scaffold_11:18083195-18084456(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30700.1	FAD-binding Berberine family protein 	LOC_Os06g35650.1	"reticuline oxidase-like protein precursor, putative, expressed"	Medtr4g125070.1	"FAD linked oxidase, N-terminal; TonB box, N-terminal; Berberine/berberine-like "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224795.1.S1_at	A	A1TS	POPTR_0011s16190	POPTR_0011s16190 (11)	scaffold_11:18114525-18115092(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44390.1	FAD-binding Berberine family protein 	LOC_Os06g35650.1	"reticuline oxidase-like protein precursor, putative, expressed"	AC147501_16.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 52339-53928 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224796.1.S1_s_at	A	A3TS	POPTR_0011s16240	POPTR_0011s16250 (11)//POPTR_0011s16240 (11)//POPTR_0634s00200 (11)	scaffold_11:18153849-18154311(+) (11)//scaffold_11:18162499-18162961(+) (11)//scaffold_634:261-723(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30760.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224797.1.S1_at	A	A2TS	POPTR_0012s00940	POPTR_0012s00940 (11)//POPTR_0012s00960 (9)	scaffold_12:606161-606606(+) (11)//scaffold_12:626885-627254(+) (9)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224799.1.S1_at	A	A1TS	POPTR_0012s00280	POPTR_0012s00280 (11)	scaffold_12:59029-59575(-) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224800.1.S1_at	A	A1TS	POPTR_0012s04420	POPTR_0012s04420 (11)	scaffold_12:3639293-3639820(+) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224802.1.S1_at	A	A1TS	POPTR_0012s04850	POPTR_0012s04850 (11)	scaffold_12:4254614-4255657(+) (11)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os01g31760.1	"acyl-ACP thioesterase, putative"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224803.1.S1_at	A	A1TS	POPTR_0012s05080	POPTR_0012s05080 (11)	scaffold_12:4574374-4574971(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g49580.1	"Protein kinase domain containing protein, expressed"	Medtr7g093620.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224804.1.S1_s_at	A	A2TS	POPTR_0012s05190	POPTR_0012s05190 (11)//POPTR_1414s00200 (10)	scaffold_12:4707720-4707908(+) (11)//scaffold_1414:2169-2351(-) (10)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os01g03690.1	"TKL_IRAK_DUF26-lg.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr6g027990.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224807.1.S1_s_at	A	A2TS	POPTR_0012s08600	POPTR_0015s09430 (11)//POPTR_0012s08600 (11)	scaffold_12:9697468-9697898(+) (11)//scaffold_15:10648770-10649197(+) (11)	NA	Q8LPH6	Transcription factor MYB86	AT5G26660.1	myb domain protein 86 	LOC_Os05g04820.1	"MYB family transcription factor, putative, expressed"	Medtr3g114650.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224807.1.S1_x_at	A	A1TS	POPTR_0012s08600	POPTR_0012s08600 (11)	scaffold_12:9697387-9698007(+) (11)	NA	Q8LPH6	Transcription factor MYB86	AT5G26660.1	myb domain protein 86 	LOC_Os05g04820.1	"MYB family transcription factor, putative, expressed"	Medtr3g114650.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224808.1.S1_s_at	A	A2TS	POPTR_0012s08680	POPTR_0012s08680 (11)//POPTR_0015s09490 (11)	scaffold_12:9785792-9786142(-) (11)//scaffold_15:10699205-10699555(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT1G15530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224809.1.S1_at	A	A1TS	POPTR_0012s08940	POPTR_0012s08940 (11)	scaffold_12:10000083-10000628(-) (11)	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr2g122680.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.224810.1.S1_at	A	A1MS	POPTR_0012s09280	POPTR_0012s09280 (11)	scaffold_12:10324736-10325362(+) (11)	NA	O65039	Vignain	NA	NA	NA	NA	AC235753_6.1	"Peptidase C1A, papain; AC235753.1 34826-37135 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224811.1.S1_at	A	A1TS	POPTR_0452s00210	POPTR_0452s00210 (11)	scaffold_452:9782-10035(+) (11)	NA	Q9LU24	Putative F-box protein At3g16210	AT3G16210.1	F-box family protein 	LOC_Os09g30180.2	"OsFBX331 - F-box domain containing protein, expressed"	Medtr5g050030.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224814.1.S1_at	A	A1TS	POPTR_0012s11360	POPTR_0012s11360 (11)	scaffold_12:11836011-11836577(+) (11)	NA	O81767	Pentatricopeptide repeat-containing protein At4g33990	AT4G33990.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g27880.1	"tetratricopeptide-like helical, putative"	Medtr2g122730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224816.1.S1_x_at	A	A1TS	POPTR_0012s12740	POPTR_0012s12740 (11)	scaffold_12:13170281-13170996(-) (11)	NA	Q9LY18	Probable pectinesterase 49	AT5G07420.1	Pectin lyase-like superfamily protein 	LOC_Os08g10604.1	"pectinesterase, putative, expressed"	Medtr8g133070.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224818.1.S1_at	A	A1TS	POPTR_0012s12950	POPTR_0012s12950 (11)	scaffold_12:13300637-13301243(+) (11)	POPTR_0015s12870 (6)	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G63700.1	Protein kinase superfamily protein 	LOC_Os02g44642.1	"STE_MEKK_ste11_MAP3K.10 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g126720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224819.1.S1_at	A	A1TS	POPTR_0012s13030	POPTR_0012s13030 (9)	scaffold_12:13346170-13346490(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT4G20140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os01g41770.1	"leucine rich repeat protein, putative, expressed"	Medtr6g062150.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.224820.1.S1_at	A	A1TS	POPTR_0012s13240	POPTR_0012s13240 (11)	scaffold_12:13481125-13481948(-) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT3G61250.1	myb domain protein 17 	LOC_Os02g42870.1	"MYB family transcription factor, putative, expressed"	Medtr7g084550.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224820.1.S1_s_at	A	A1TS	POPTR_0012s13240	POPTR_0012s13240 (11)	scaffold_12:13480198-13481056(-) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT3G61250.1	myb domain protein 17 	LOC_Os02g42870.1	"MYB family transcription factor, putative, expressed"	Medtr7g084550.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224821.1.S1_at	A	A1TS	POPTR_0012s13540	POPTR_0012s13540 (11)	scaffold_12:13655083-13655935(-) (11)	NA	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.224822.1.S1_at	A	A1MS	POPTR_0012s13720	POPTR_0012s13720 (10)	scaffold_12:13748557-13749101(-) (10)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os12g29280.1	"disease resistance protein RGA3, putative, expressed"	Medtr3g097280.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224823.1.S1_at	A	A1TS	POPTR_0012s14060	POPTR_0012s14060 (11)	scaffold_12:14073083-14073770(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT1G52540.1	Protein kinase superfamily protein 	LOC_Os09g36180.1	glycosyl transferase family 8 protein	Medtr2g126640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224824.1.S1_at	A	A1TS	POPTR_0012s14130	POPTR_0012s14130 (11)	scaffold_12:14127865-14128310(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os04g23760.1	"lectin protein kinase family protein, putative"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224826.1.S1_at	A	A1TS	POPTR_0012s14920	POPTR_0012s14920 (11)	scaffold_12:14627736-14628301(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224827.1.S1_at	A	A1MS	POPTR_0012s14930	POPTR_0012s14930 (9)	scaffold_12:14633793-14634045(-) (9)	NA	P21238	"RuBisCO large subunit-binding protein subunit alpha, chloroplastic"	AT5G18820.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g64210.1	"T-complex protein, putative, expressed"	Medtr4g114440.1	"GroEL-like chaperone, ATPase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224828.1.S1_x_at	A	A1TS	POPTR_0012s15020	POPTR_0012s15020 (11)	scaffold_12:14694534-14695107(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224829.1.S1_at	A	A1TS	POPTR_0013s02120	POPTR_0013s02120 (11)	scaffold_13:1267510-1268348(-) (11)	NA	Q6A333	Protein ALWAYS EARLY 2	AT3G05380.4	DIRP ;Myb-like DNA-binding domain 	LOC_Os03g43800.2	"DIRP family protein, putative, expressed"	Medtr1g099580.1	DIRP; Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22483.1.S1_s_at	A	A1TS	POPTR_0009s14340	POPTR_0009s14340 (11)	scaffold_9:11243100-11243869(+) (11)	NA	B9HQZ6	"Probable alanyl-tRNA synthetase, chloroplastic"	AT5G22800.1	"Alanyl-tRNA synthetase, class IIc "	LOC_Os06g13660.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr3g163940.1	"Alanyl-tRNA synthetase, class IIc "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006419|alanyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004813|alanine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.224830.1.S1_at	A	A1TS	POPTR_0013s02520	POPTR_0013s02520 (11)	scaffold_13:1485737-1493879(+) (11)	NA	Q8LPB4	Phytosulfokine receptor 1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	AC235756_17.1	"Leucine-rich repeat, typical subtype AC235756.1 127596-123999 E EGN_Mt090430 200"	NA	GO:0005515|protein binding	NA
PtpAffx.224832.1.S1_x_at	A	A1TS	POPTR_0013s03490	POPTR_0013s03490 (10)	scaffold_13:2157422-2159566(-) (10)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093150.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224833.1.S1_s_at	A	A2TS	POPTR_0030s00550	POPTR_0030s00570 (11)//POPTR_0030s00550 (11)	scaffold_30:283617-284177(+) (11)//scaffold_30:302199-302759(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g35254.1	"transposon protein, putative, CACTA, En/Spm sub-class"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224835.1.S1_at	A	A1TS	POPTR_0013s03510	POPTR_0013s03510 (11)	scaffold_13:2182873-2183203(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g35254.1	"transposon protein, putative, CACTA, En/Spm sub-class"	Medtr8g043420.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224836.1.S1_at	A	A2TS	POPTR_0013s03780	POPTR_0013s03780 (11)//POPTR_0013s05980 (11)	scaffold_13:2439247-2439942(+) (11)//scaffold_13:4380520-4381215(+) (11)	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.224837.1.S1_x_at	A	A1TS	POPTR_0014s00550	POPTR_0014s00550 (10)	scaffold_14:506243-506599(+) (10)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039420.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224839.1.S1_at	A	A1MS	POPTR_0013s04410	POPTR_0013s04410 (11)	scaffold_13:3022780-3023334(-) (11)	NA	Q9SR00	"Pentatricopeptide repeat-containing protein At3g04760, chloroplastic"	AT3G04760.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os02g35750.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g093590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224840.1.S1_s_at	A	A1TS	POPTR_0013s04990	POPTR_0013s04990 (11)	scaffold_13:3524294-3525307(-) (11)	NA	C0LGV0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g26140.1	"cysteine-rich receptor-like protein kinase 4 precursor, putative"	Medtr7g143320.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224841.1.S1_at	A	A1TS	POPTR_0013s05300	POPTR_0013s05300 (11)	scaffold_13:3763700-3764079(-) (11)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224843.1.S1_at	A	A1TS	POPTR_0013s05640	POPTR_0013s05640 (11)	scaffold_13:4053038-4053545(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12600.1	"receptor-like protein kinase, putative, expressed"	Medtr5g006250.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224844.1.S1_at	A	A1TS	POPTR_0013s05650	POPTR_0013s05650 (11)	scaffold_13:4057618-4058172(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12560.1	"receptor-like protein kinase, putative, expressed"	Medtr5g006250.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224846.1.S1_at	A	A1TS	POPTR_0013s06950	POPTR_0013s06950 (11)	scaffold_13:5647168-5647797(-) (11)	NA	P32110	Probable glutathione S-transferase	AT3G09270.1	glutathione S-transferase TAU 8 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224849.1.S1_s_at	A	A5TS	POPTR_0001s42300	POPTR_0001s43850 (11)//POPTR_0001s42300 (11)//POPTR_0001s43860 (11)//POPTR_0001s44380 (11)//POPTR_0001s42310 (10)	scaffold_1:42044934-42045270(+) (11)//scaffold_1:42064468-42064804(-) (11)//scaffold_1:44221768-44222104(+) (11)//scaffold_1:44234630-44234966(-) (11)//scaffold_1:44319034-44319370(-) (11)//scaffold_1:44807136-44807472(+) (11)	POPTR_0001s43920 (8)	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224850.1.S1_at	A	A6TS	POPTR_0001s44370	POPTR_0001s44370 (11)//POPTR_0016s09365 (11)//POPTR_0001s14655 (10)//POPTR_0016s03650 (10)//POPTR_0007s08310 (9)//POPTR_0003s06180 (9)	scaffold_1:11521684-11521937(-) (10)//scaffold_1:44798929-44799182(-) (11)//scaffold_11:8093763-8094016(-) (9)//scaffold_16:2009512-2009765(-) (10)//scaffold_16:7386894-7387147(-) (11)//scaffold_3:7610041-7610294(+) (9)//scaffold_7:6970031-6970284(+) (9)//scaffold_7:10239928-10240182(+) (9)	POPTR_0003s01520 (7)//POPTR_0001s42900 (7)//POPTR_0010s00872 (6)	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os11g14280.1	"transposon protein, putative, unclassified"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.224852.1.S1_at	A	A5TS	POPTR_0001s44560	POPTR_0001s44560 (11)//POPTR_0006s13090 (9)//POPTR_0004s15890 (9)//POPTR_0007s13470 (9)//POPTR_0004s11480 (9)	scaffold_1:45017793-45017998(+) (11)//scaffold_143:8243-8320(+) (9)//scaffold_16:10192505-10192582(+) (9)//scaffold_19:2090503-2090580(-) (9)//scaffold_4:10204112-10204189(+) (9)//scaffold_4:16408352-16408429(-) (9)//scaffold_6:10297563-10297640(+) (9)//scaffold_7:13542939-13543016(+) (9)//scaffold_8:16627612-16627689(+) (9)	POPTR_0001s18450 (6)	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os11g39940.1	"transposon protein, putative, unclassified"	Medtr3g019170.1	Terpenoid synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224852.1.S1_x_at	A	A4TS	POPTR_0001s44560	POPTR_0001s44560 (11)//POPTR_0006s13090 (9)//POPTR_0007s13470 (9)//POPTR_0004s11480 (9)	scaffold_1:45017793-45017995(+) (11)//scaffold_143:8150-8317(+) (9)//scaffold_16:10192412-10192579(+) (9)//scaffold_19:2090506-2090673(-) (9)//scaffold_4:10204019-10204186(+) (9)//scaffold_4:16408355-16408522(-) (9)//scaffold_5:14988861-14989029(-) (9)//scaffold_6:10297470-10297637(+) (9)//scaffold_7:13542846-13543013(+) (9)//scaffold_8:16627519-16627686(+) (9)	POPTR_0004s15890 (8)//POPTR_0001s18450 (6)	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os11g39940.1	"transposon protein, putative, unclassified"	Medtr3g019170.1	Terpenoid synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224853.1.S1_x_at	A	A1MS	POPTR_0007s08900	POPTR_0007s08900 (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.224855.1.S1_s_at	A	A5TS	POPTR_0013s08850	POPTR_0013s10710 (11)//POPTR_0013s08890 (11)//POPTR_0013s10730 (11)//POPTR_0013s10680 (11)//POPTR_0013s08850 (11)	scaffold_13:8341434-8341706(-) (11)//scaffold_13:8374918-8375190(-) (11)//scaffold_13:11022048-11022320(-) (11)//scaffold_13:11044494-11044766(-) (11)//scaffold_13:11060781-11061053(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os07g37950.1	expressed protein	Medtr4g111180.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224856.1.S1_at	A	A2TS	POPTR_0013s08850	POPTR_0013s10700 (11)//POPTR_0013s08850 (11)	scaffold_13:8337246-8337812(-) (11)//scaffold_13:11037023-11037589(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os07g37950.1	expressed protein	Medtr4g111180.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224857.1.S1_s_at	A	A5TS	POPTR_0013s08930	POPTR_0013s08960 (11)//POPTR_0013s08990 (11)//POPTR_0013s08930 (11)//POPTR_0090s00200 (11)//POPTR_1560s00200 (11)	scaffold_13:8439628-8440133(-) (11)//scaffold_13:8479524-8480029(-) (11)//scaffold_13:8534471-8534976(-) (11)//scaffold_1560:622-1127(+) (11)//scaffold_90:227-732(-) (11)	NA	P17801	Putative receptor protein kinase ZmPK1	AT1G34300.1	lectin protein kinase family protein 	LOC_Os01g47810.1	"S-locus-like receptor protein kinase, putative, expressed"	Medtr3g034050.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224864.1.S1_at	A	A2TS	POPTR_0013s13860	POPTR_0481s00200 (11)//POPTR_0013s13860 (11)	scaffold_13:14203003-14203351(-) (11)//scaffold_481:4171-4519(-) (11)	NA	P34913	Epoxide hydrolase 2	AT4G02340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35540.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224865.1.S1_at	A	A1TS	POPTR_0013s14130	POPTR_0013s14130 (11)	scaffold_13:14451317-14451807(-) (11)	NA	Q9LR69	Pentatricopeptide repeat-containing protein At1g03540	AT1G03540.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os06g40860.1	"pentatricopeptide, putative, expressed"	Medtr2g056180.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224866.1.S1_x_at	A	A1TS	POPTR_0013s14550	POPTR_0013s14550 (9)	scaffold_13:14704090-14704764(-) (10)	NA	P20024	Myb-related protein Zm1	AT3G23250.1	myb domain protein 15 	LOC_Os10g33810.1	"myb-related protein Myb4, putative, expressed"	Medtr2g103070.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224867.1.S1_at	A	A1TS	POPTR_0013s14640	POPTR_0013s14640 (11)	scaffold_13:14796593-14797177(-) (11)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G62930.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224868.1.S1_at	A	A1TS	POPTR_0013s14720	POPTR_0013s14720 (11)	scaffold_13:14853837-14858006(+) (11)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os01g57510.1	"receptor protein kinase, putative, expressed"	Medtr4g124540.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224869.1.S1_at	A	A1TS	POPTR_0013s15240	POPTR_0013s15240 (11)	scaffold_13:15259261-15260679(-) (11)	NA	A7NY33	Peroxidase 4	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os11g02130.1	"peroxidase precursor, putative, expressed"	Medtr5g091290.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.224870.1.S1_at	A	A2TS	POPTR_0361s00200	POPTR_0361s00200 (11)//POPTR_0014s00625 (9)	scaffold_14:580571-581221(+) (10)//scaffold_361:402-1052(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039340.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224871.1.S1_at	A	A1TS	POPTR_0014s06750	POPTR_0014s06750 (11)	scaffold_14:5104644-5105634(+) (11)	NA	NA	NA	AT2G45480.1	growth-regulating factor 9 	LOC_Os02g45570.2	"growth regulating factor protein, putative, expressed"	Medtr7g126820.1	QLQ 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.224872.1.S1_s_at	A	A2TS	POPTR_0014s06770	POPTR_0014s06800 (11)//POPTR_0014s06770 (11)	scaffold_14:5118715-5119137(+) (11)//scaffold_14:5129096-5129518(+) (11)	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os06g03930.1	"cytochrome P450 86A1, putative, expressed"	AC233070_16.1	Cytochrome P450 AC233070.4 76058-73526 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224874.1.S1_at	A	A1TS	POPTR_0014s07050	POPTR_0014s07050 (11)	scaffold_14:5325005-5325451(+) (11)	NA	Q9LLL8	Xylem serine proteinase 1	AT4G00230.1	xylem serine peptidase 1 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	AC233100_30.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide; Peptidase S8A, bacillopeptidase F AC233100.6 99564-105523 E EGN_Mt090430 200"	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.224875.1.S1_at	A	A1TS	POPTR_0014s07700	POPTR_0014s07700 (11)	scaffold_14:5773934-5774827(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT3G61250.1	myb domain protein 17 	LOC_Os02g42870.1	"MYB family transcription factor, putative, expressed"	Medtr6g031320.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224876.1.S1_at	A	A1TS	POPTR_0014s09350	POPTR_0014s09350 (11)	scaffold_14:6953893-6954695(+) (11)	NA	O65717	Cyclic nucleotide-gated ion channel 1	AT5G53130.1	cyclic nucleotide gated channel 1 	LOC_Os06g33570.1	"cyclic nucleotide-gated ion channel 1, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.224877.1.S1_at	A	A1TS	POPTR_0014s09610	POPTR_0014s09610 (11)	scaffold_14:7172609-7173256(+) (11)	NA	Q9ZPY2	Laccase-6	AT2G46570.1	laccase 6 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g078230.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224878.1.S1_at	A	A1TS	POPTR_0014s09630	POPTR_0014s09630 (11)	scaffold_14:7183835-7184407(-) (11)	NA	P81393	Myb-related protein 308	AT2G16720.1	myb domain protein 7 	LOC_Os05g35500.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224879.1.S1_at	A	A1TS	POPTR_0014s10820	POPTR_0014s10820 (11)	scaffold_14:8087727-8087980(-) (11)	NA	A5DA00	Protein transport protein SEC23	AT4G01810.1	Sec23/Sec24 protein transport family protein 	LOC_Os01g21850.1	"protein transport protein-related, putative, expressed"	Medtr7g134070.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.224879.1.S1_x_at	A	A1TS	POPTR_0014s10820	POPTR_0014s10820 (11)	scaffold_14:8087727-8087980(-) (11)	NA	A5DA00	Protein transport protein SEC23	AT4G01810.1	Sec23/Sec24 protein transport family protein 	LOC_Os01g21850.1	"protein transport protein-related, putative, expressed"	Medtr7g134070.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.224880.1.S1_at	A	A1TS	POPTR_0014s10940	POPTR_0014s10940 (11)	scaffold_14:8158530-8158990(+) (11)	NA	NA	NA	AT3G17450.1	hAT dimerisation domain-containing protein 	LOC_Os09g32380.1	"transposon protein, putative, unclassified, expressed"	Medtr2g052950.1	Protein of unknown function DUF659 	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.224882.1.S1_at	A	A1TS	POPTR_0014s11290	POPTR_0014s11290 (11)	scaffold_14:8401453-8401997(-) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os03g06910.1	PPR repeat containing protein	Medtr6g089560.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224883.1.S1_at	A	A1TS	POPTR_0014s11780	POPTR_0014s11780 (11)	scaffold_14:8743343-8745284(+) (11)	NA	P27898	Myb-related protein P	AT5G49330.1	myb domain protein 111 	LOC_Os01g19970.1	"MYB family transcription factor, putative, expressed"	Medtr8g138260.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224884.1.S1_at	A	A1TS	POPTR_0014s12770	POPTR_0014s12770 (11)	scaffold_14:9415109-9415593(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os05g33440.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224885.1.S1_s_at	A	A1TS	POPTR_0014s14110	POPTR_0014s14110 (11)	scaffold_14:10335855-10336322(+) (11)	NA	NA	NA	AT5G13950.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os07g27760.1	expressed protein	Medtr7g097240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224887.1.S1_at	A	A1TS	POPTR_0014s15130	POPTR_0014s15130 (10)	scaffold_14:11239254-11239667(-) (10)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G21690.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr2g103970.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.224889.1.S1_at	A	A1MA	POPTR_0014s15990	POPTR_0014s15990 (10)	scaffold_14:12072013-12072459(-) (11)	NA	A7SLC8	N-acetyltransferase 9-like protein	AT2G04845.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g09860.2	"acetyltransferase, GNAT family, putative, expressed"	Medtr3g106050.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.224890.1.S1_at	A	A1TS	POPTR_0014s16040	POPTR_0014s16040 (9)	scaffold_14:12103987-12104654(+) (9)	NA	P49063	Exopolygalacturonase clone GBGA483	AT3G07850.1	Pectin lyase-like superfamily protein 	LOC_Os08g23790.1	"polygalacturonase, putative, expressed"	Medtr2g074020.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.224891.1.S1_at	A	A1TS	POPTR_0014s16970	POPTR_0014s16970 (11)	scaffold_14:13117312-13118020(+) (11)	NA	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.224892.1.S1_x_at	A	A1TS	POPTR_0014s17470	POPTR_0014s17470 (11)	scaffold_14:13657228-13657574(-) (11)	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os09g14530.1	"hAT dimerisation domain-containing protein, putative"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.224895.1.S1_at	A	A1TS	POPTR_0014s18570	POPTR_0014s18570 (11)	scaffold_14:15901298-15901757(+) (11)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT2G20300.1	Protein kinase superfamily protein 	LOC_Os02g57080.1	"serine/threonine-protein kinase, putative, expressed"	Medtr7g117650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224896.1.S1_at	A	A1TS	POPTR_0014s18490	POPTR_0014s18490 (11)	scaffold_14:15711034-15711891(+) (11)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.2249.1.A1_at	A	A1TS	POPTR_0004s18320	POPTR_0004s18320 (11)	scaffold_4:18251115-18251395(-) (11)	NA	Q14498	RNA-binding protein 39	AT2G16940.2	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.224900.1.S1_at	A	A1TS	POPTR_0019s01120	POPTR_0019s01120 (11)	scaffold_19:851552-851757(+) (11)	NA	O65238	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370	AT5G35370.1	S-locus lectin protein kinase family protein 	LOC_Os09g28180.1	"D-mannose binding lectin family protein, expressed"	Medtr3g097890.1	Protein kinase; Curculin-like (mannose-binding) lectin; N/apple PAN 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224902.1.S1_a_at	A	A1TS	POPTR_0019s01050	POPTR_0019s01050 (11)	scaffold_19:809083-809328(+) (11)	POPTR_0019s01010 (7)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224902.1.S1_x_at	A	A1TS	POPTR_0019s01050	POPTR_0019s01050 (9)	scaffold_19:808586-809490(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224903.1.S1_at	A	A1TS	POPTR_0019s01020	POPTR_0019s01020 (11)	scaffold_19:784731-785170(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224903.1.S1_x_at	A	A1TS	POPTR_0019s01020	POPTR_0019s01020 (11)	scaffold_19:784658-785167(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224904.1.S1_at	A	A1TS	POPTR_0019s00990	POPTR_0019s00990 (11)	scaffold_19:753851-754389(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012320.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224905.1.S1_s_at	A	A1TS	POPTR_0019s00950	POPTR_0019s00950 (11)	scaffold_19:724820-725119(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224909.1.S1_s_at	A	A3TS	POPTR_0019s00880	POPTR_0019s00880 (11)//POPTR_0019s00940 (11)//POPTR_0019s00910 (11)	scaffold_19:630142-630331(-) (11)//scaffold_19:691334-691523(-) (11)//scaffold_19:706965-707154(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.1	expressed protein	Medtr3g109800.1	TIR 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.224911.1.S1_at	A	A1MS	POPTR_0031s00510	POPTR_0031s00510 (11)	scaffold_31:362067-362465(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.224913.1.S1_at	A	A2TS	POPTR_0019s00450	POPTR_0019s00450 (11)//POPTR_1350s00200 (9)	scaffold_1350:5015-5614(-) (9)//scaffold_19:247231-247842(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224914.1.S1_at	A	A1TS	POPTR_0019s00470	POPTR_0019s00470 (9)	scaffold_19:262612-263019(+) (9)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224915.1.S1_at	A	A1TS	POPTR_0031s00230	POPTR_0031s00230 (9)	scaffold_19:309087-310143(+) (9)//scaffold_31:36544-37597(-) (9)	POPTR_0019s00520 (8)	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224916.1.S1_s_at	A	A1TS	POPTR_0019s00510	POPTR_0019s00510 (11)	scaffold_19:305812-306227(+) (11)//scaffold_31:38801-39216(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224917.1.S1_at	A	A1TS	POPTR_0019s00570	POPTR_0019s00570 (11)	scaffold_19:355861-356418(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224918.1.S1_at	A	A1TS	POPTR_0019s00580	POPTR_0019s00580 (11)	scaffold_19:359633-359709(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.224919.1.S1_at	A	A1TS	POPTR_0019s00620	POPTR_0019s00620 (11)	scaffold_19:382186-383363(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224920.1.S1_a_at	A	A1TS	POPTR_0019s00700	POPTR_0019s00700 (9)	scaffold_19:453398-454382(+) (9)//scaffold_19:453671-454655(+) (9)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224920.1.S1_at	A	A1TS	POPTR_0019s00700	POPTR_0019s00700 (10)	scaffold_19:454660-455066(+) (10)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224921.1.S1_at	A	A1TS	POPTR_0019s00705	POPTR_0019s00705 (11)	scaffold_19:460088-461475(+) (11)	NA	NA	NA	NA	NA	NA	NA	AC225526_2.1	hypothetical protein AC225526.7 12513-6299 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.224922.1.S1_at	A	A1TS	POPTR_0019s00720	POPTR_0019s00720 (11)	scaffold_19:484697-485265(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os12g29280.1	"disease resistance protein RGA3, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.224923.1.S1_s_at	A	A2TS	POPTR_0019s00890	POPTR_0019s00890 (11)//POPTR_0019s00850 (10)	scaffold_19:580866-581259(-) (10)//scaffold_19:662054-664231(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.1	expressed protein	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224928.1.S1_at	A	A1TS	POPTR_0019s03080	POPTR_0019s03080 (11)	scaffold_19:3094748-3095266(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224929.1.S1_at	A	A1TS	POPTR_0123s00220	POPTR_0123s00220 (10)	scaffold_123:9602-9950(-) (10)	NA	O22727	Probable disease resistance protein At1g61190	AT1G61180.2	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os09g10054.1	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224930.1.S1_at	A	A1TS	POPTR_0019s03120	POPTR_0019s03120 (11)	scaffold_19:3135377-3136915(-) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.224933.1.S1_at	A	A1TS	POPTR_0019s03490	POPTR_0019s03490 (9)	scaffold_19:3588990-3590186(+) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT3G23250.1	myb domain protein 15 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224935.1.S1_at	A	A1TS	POPTR_0019s03560	POPTR_0019s03560 (11)	scaffold_19:3674075-3674471(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr3g097280.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224936.1.S1_at	A	A1TS	POPTR_0019s03710	POPTR_0019s03710 (11)	scaffold_19:3805524-3806452(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224937.1.S1_at	A	A1TS	POPTR_0019s03770	POPTR_0019s03770 (10)	scaffold_19:3863767-3864301(-) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224943.1.S1_s_at	A	A3TS	POPTR_0019s05190	POPTR_0019s05200 (11)//POPTR_0019s05210 (11)//POPTR_0019s05190 (11)	scaffold_19:5410795-5411881(+) (11)//scaffold_19:5439715-5440814(+) (11)//scaffold_19:5462011-5463100(+) (11)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224946.1.S1_s_at	A	A2TS	POPTR_0019s05380	POPTR_0019s05390 (11)//POPTR_0019s05380 (11)	scaffold_19:5728088-5731029(-) (11)//scaffold_19:5729517-5731719(-) (11)//scaffold_19:5730930-5732771(-) (11)//scaffold_19:5731620-5733463(-) (11)//scaffold_19:5732672-5734526(-) (11)//scaffold_19:5733364-5735217(-) (11)//scaffold_252:176-275(-) (11)	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.224953.1.S1_s_at	A	A11TS	POPTR_0019s08770	POPTR_0019s14310 (10)//POPTR_0019s08780 (10)//POPTR_0019s08860 (10)//POPTR_0019s14340 (10)//POPTR_0019s14400 (10)//POPTR_0019s08770 (10)//POPTR_0019s08810 (10)//POPTR_0019s14380 (10)//POPTR_0019s08830 (10)//POPTR_0019s08890 (10)//POPTR_0780s00200 (10)	scaffold_19:10300417-10300463(-) (10)//scaffold_19:10336339-10336385(-) (10)//scaffold_19:10345691-10352892(-) (10)//scaffold_19:10375200-10375246(-) (10)//scaffold_19:10390383-10390429(-) (10)//scaffold_19:10460305-10460351(-) (10)//scaffold_19:15063461-15063507(-) (10)//scaffold_19:15120372-15120418(-) (10)//scaffold_19:15169285-15169331(-) (10)//scaffold_19:15201947-15201993(-) (10)//scaffold_780:3685-3731(-) (10)	POPTR_0019s08790 (6)	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224953.1.S1_x_at	A	A3MS	POPTR_0019s08780	POPTR_0019s08780 (9)//POPTR_0019s08860 (9)//POPTR_0780s00200 (9)	scaffold_19:10336296-10336797(-) (9)//scaffold_19:10390340-10390918(-) (9)//scaffold_780:3642-4156(-) (9)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224954.1.S1_s_at	A	A3TS	POPTR_0019s08770	POPTR_0019s08770 (11)//POPTR_0019s08830 (11)//POPTR_0019s08860 (9)	scaffold_19:10302208-10302672(-) (11)//scaffold_19:10376991-10377455(-) (11)//scaffold_19:10392242-10392569(-) (9)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224955.1.S1_at	A	A1TS	POPTR_0019s09820	POPTR_0019s09820 (11)	scaffold_19:11420459-11420804(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224956.1.S1_at	A	A1MS	POPTR_0019s09840	POPTR_0019s09840 (11)	scaffold_19:11437225-11437749(+) (11)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224957.1.S1_at	A	A1TS	POPTR_0077s00220	POPTR_0077s00220 (11)	scaffold_77:40769-40931(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g16310.1	"retrotransposon protein, putative, LINE subclass"	Medtr5g074430.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.224959.1.S1_s_at	A	A1TS	POPTR_0014s00360	POPTR_0014s00360 (11)	scaffold_14:184402-184444(+) (11)	NA	P0C8Y0	Camelliol C synthase	AT1G78955.1	camelliol C synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.224960.1.S1_at	A	A1TS	POPTR_0019s10970	POPTR_0019s10970 (11)	scaffold_19:12417399-12420576(-) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33480.1	"cytochrome P450 domain containing protein, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224961.1.S1_at	A	A1TS	POPTR_0019s11620	POPTR_0019s11620 (11)	scaffold_19:12886334-12886778(+) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224961.1.S1_x_at	A	A1TS	POPTR_0019s11620	POPTR_0019s11620 (11)	scaffold_19:12886334-12886865(+) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224962.1.S1_at	A	A1TS	POPTR_0019s11630	POPTR_0019s11630 (11)	scaffold_19:12894664-12895078(-) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224962.1.S1_x_at	A	A1TS	POPTR_0019s11630	POPTR_0019s11630 (11)	scaffold_19:12894530-12895078(-) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224964.1.S1_at	A	A1TS	POPTR_0019s11860	POPTR_0019s11860 (11)	scaffold_19:13090240-13090316(+) (11)	POPTR_0019s11850 (8)	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224967.1.S1_s_at	A	A1TS	POPTR_0019s14570	POPTR_0019s14570 (9)	scaffold_19:15315877-15316180(+) (9)	NA	P29766	60S ribosomal protein L8	AT3G51190.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr7g084800.1	Elongation factor P-like protein YeiP 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.224969.1.S1_at	A	A1TS	POPTR_0019s14380	POPTR_0019s14380 (11)	scaffold_19:15170978-15171069(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224970.1.S1_s_at	A	A1TS	POPTR_0019s14340	POPTR_0019s14340 (11)	scaffold_19:15122434-15122686(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224971.1.S1_at	A	A2TS	POPTR_0019s14310	POPTR_0019s14310 (11)//POPTR_0019s14340 (9)	scaffold_19:15063265-15063316(-) (11)//scaffold_19:15120176-15120212(-) (9)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224972.1.S1_at	A	A1TS	POPTR_0019s14250	POPTR_0019s14250 (11)	scaffold_19:14999402-15000095(+) (11)	NA	Q9ZR08	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	AT4G03230.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g103220.1	"ATP-dependent helicase, DEAD-box; Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224973.1.S1_s_at	A	A3TS	POPTR_0019s14210	POPTR_0019s14230 (11)//POPTR_0019s14240 (11)//POPTR_0019s14210 (11)	scaffold_19:14959728-14960039(+) (11)//scaffold_19:14979778-14980089(+) (11)//scaffold_19:14989574-14989885(+) (11)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g103220.1	"ATP-dependent helicase, DEAD-box; Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224976.1.S1_x_at	A	A1TS	POPTR_0019s14120	POPTR_0019s14120 (11)	scaffold_19:14881499-14882261(-) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT5G16770.2	myb domain protein 9 	LOC_Os10g33810.1	"myb-related protein Myb4, putative, expressed"	Medtr2g103070.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224977.1.S1_at	A	A1TS	POPTR_0019s14070	POPTR_0019s14070 (11)	scaffold_19:14829770-14830518(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT4G21440.1	MYB-like 102 	LOC_Os07g37210.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224978.1.S1_s_at	A	A6TS	POPTR_0004s20340	POPTR_0273s00200 (11)//POPTR_0004s20360 (11)//POPTR_0103s00220 (11)//POPTR_0004s20380 (11)//POPTR_0004s20340 (11)//POPTR_0004s20410 (11)	scaffold_103:66155-66258(-) (11)//scaffold_273:7983-8086(+) (11)//scaffold_4:19901403-19901506(-) (11)//scaffold_4:19928735-19928838(-) (11)//scaffold_4:19955592-19955695(-) (11)//scaffold_4:19990669-19990772(-) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os02g02120.1	OsWAK11 - OsWAK receptor-like protein kinase	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224980.1.S1_at	A	A1TS	POPTR_0015s02030	POPTR_0015s02030 (11)	scaffold_15:1399338-1399946(+) (11)	NA	Q9FID5	Probable receptor-like protein kinase At5g39030	AT5G38260.1	Protein kinase superfamily protein 	LOC_Os01g02790.1	"protein kinase domain containing protein, expressed"	Medtr1g034870.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224981.1.S1_at	A	A1TS	POPTR_0015s02040	POPTR_0015s02040 (11)	scaffold_15:1399435-1403254(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02390.1	"protein kinase domain containing protein, expressed"	Medtr1g034760.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224982.1.S1_a_at	A	A1TS	POPTR_0015s03660	POPTR_0015s03660 (11)	scaffold_15:3451729-3451860(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224983.1.S1_s_at	A	A2TS	POPTR_0015s03870	POPTR_0015s03870 (11)//POPTR_0160s00230 (11)	scaffold_15:3793391-3793953(+) (11)//scaffold_160:28804-29366(+) (11)//scaffold_160:46829-47475(+) (11)	POPTR_0373s00200 (6)//POPTR_0160s00270 (6)	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66910.1	Protein kinase superfamily protein 	LOC_Os01g04460.1	"Ser/Thr protein kinase, putative"	Medtr6g027800.1	Neurohypophysial hormone; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224986.1.S1_at	A	A1TS	POPTR_0015s04100	POPTR_0015s04100 (11)	scaffold_15:4101790-4102478(-) (11)	NA	Q54J73	Poly(A) polymerase	AT1G17980.1	poly(A) polymerase 1 	LOC_Os06g21470.1	expressed protein	Medtr6g086370.1	"DNA polymerase, beta-like region; Poly(A) polymerase, central region; Poly(A) polymerase, C-terminal-like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.224987.1.S1_at	A	A1TS	POPTR_0015s04330	POPTR_0015s04330 (10)	scaffold_15:4435530-4438833(-) (11)	POPTR_0015s04350 (7)//POPTR_0015s04340 (6)	Q9LMS3	Laccase-1	AT1G18140.1	laccase 1 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.224988.1.S1_at	A	A1TS	POPTR_0015s04680	POPTR_0015s04680 (11)	scaffold_15:4906603-4907294(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g29790.1	"receptor kinase, putative"	Medtr8g078000.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.224989.1.S1_at	A	A1TS	POPTR_0015s04820	POPTR_0015s04820 (11)	scaffold_15:5011105-5011596(-) (11)	NA	Q9C6S6	Putative pentatricopeptide repeat-containing protein At1g31840	AT1G31840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g57410.3	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr4g155160.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224991.1.S1_at	A	A1TS	POPTR_0015s09490	POPTR_0015s09490 (11)	scaffold_15:10698989-10699444(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT1G15530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224992.1.S1_at	A	A1TS	POPTR_0015s09760	POPTR_0015s09760 (11)	scaffold_15:10890078-10890638(+) (11)	NA	P24465	Cytochrome P450 71A1	AT1G13080.1	"cytochrome P450, family 71, subfamily B, polypeptide 2 "	LOC_Os12g16720.1	"cytochrome P450 71A1, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224993.1.S1_at	A	A1TS	POPTR_0015s10700	POPTR_0015s10700 (9)	scaffold_15:11556852-11557432(+) (11)	NA	O22307	Cytochrome P450 71D11 (Fragment)	AT5G25120.1	"ytochrome p450, family 71, subfamily B, polypeptide 11 "	LOC_Os02g09220.1	"cytochrome P450, putative, expressed"	Medtr5g102050.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224994.1.S1_at	A	A1TS	POPTR_0015s11670	POPTR_0015s11670 (11)	scaffold_15:12238300-12238802(+) (11)	NA	Q9FIT7	"Pentatricopeptide repeat-containing protein At5g61990, mitochondrial"	AT5G61990.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g20510.1	"auxin efflux carrier, putative"	Medtr4g100840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224996.1.S1_at	A	A1TS	POPTR_0015s11900	POPTR_0015s11900 (11)	scaffold_15:12400235-12400666(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224996.1.S1_x_at	A	A1TS	POPTR_0015s11900	POPTR_0015s11900 (11)	scaffold_15:12400235-12400665(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224997.1.S1_at	A	A1TS	POPTR_0015s11930	POPTR_0015s11930 (11)	scaffold_15:12418237-12418278(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr2g055510.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224997.1.S1_x_at	A	A1TS	POPTR_0015s11930	POPTR_0015s11930 (11)	scaffold_15:12417697-12418297(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr2g055510.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224999.1.S1_at	A	A1TS	POPTR_0015s12220	POPTR_0015s12220 (11)	scaffold_15:12571697-12573480(+) (11)	NA	Q84WM7	Pectinesterase PPME1	AT1G69940.1	Pectin lyase-like superfamily protein 	LOC_Os12g37660.1	"pectinesterase, putative, expressed"	Medtr8g133070.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.225000.1.S1_at	A	A1TS	POPTR_0015s12430	POPTR_0015s12430 (11)	scaffold_15:12680088-12681868(-) (11)	NA	A8QAN4	Protein SEY1	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os01g39310.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225001.1.S1_at	A	A1TS	POPTR_0015s12520	POPTR_0015s12520 (11)	scaffold_15:12762861-12763318(-) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225001.1.S1_x_at	A	A1TS	POPTR_0015s12520	POPTR_0015s12520 (11)	scaffold_15:12762861-12763318(-) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225003.1.S1_s_at	A	A1TS	POPTR_0015s12600	POPTR_0015s12600 (11)	scaffold_15:12821554-12822050(-) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr2g055510.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225005.1.S1_at	A	A1TS	POPTR_0015s14850	POPTR_0015s14850 (11)	scaffold_15:14305712-14306247(-) (11)	NA	Q94FT4	Salutaridinol 7-O-acetyltransferase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.225006.1.S1_at	A	A1TS	POPTR_0015s14800	POPTR_0015s14800 (11)	scaffold_15:14276622-14277120(+) (11)	NA	Q94FT4	Salutaridinol 7-O-acetyltransferase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os09g25460.1	"transferase family protein, putative, expressed"	Medtr5g092230.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.225007.1.S1_at	A	A1TS	POPTR_0015s14040	POPTR_0015s14040 (11)	scaffold_15:13791170-13791788(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT1G52540.1	Protein kinase superfamily protein 	LOC_Os09g36180.1	glycosyl transferase family 8 protein	Medtr2g126640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225008.1.S1_at	A	A1TS	POPTR_0015s13770	POPTR_0015s13770 (11)	scaffold_15:13564000-13564509(+) (11)	NA	Q6L545	Gibberellin receptor GID1	AT5G62180.1	carboxyesterase 20 	LOC_Os08g43430.1	"CXE carboxylesterase, putative, expressed"	Medtr1g130060.1	"Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently Inhibited By Paraoxon, putative "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.225009.1.S1_at	A	A1TS	POPTR_0015s13590	POPTR_0015s13590 (11)	scaffold_15:13473601-13473898(+) (11)	NA	Q9FXW4	Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT3G61040.1	"cytochrome P450, family 76, subfamily C, polypeptide 7 "	LOC_Os10g08540.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225010.1.S1_at	A	A1TS	POPTR_0015s13180	POPTR_0015s13180 (11)	scaffold_15:13237595-13239189(-) (11)	NA	Q8GWP0	Transcription factor MYB39	AT3G61250.1	myb domain protein 17 	LOC_Os02g42870.1	"MYB family transcription factor, putative, expressed"	Medtr7g084550.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225012.1.S1_at	A	A1TS	POPTR_0016s01620	POPTR_0016s01620 (11)	scaffold_16:738067-738162(+) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225014.1.S1_x_at	A	A1TS	POPTR_0016s02260	POPTR_0016s02260 (11)	scaffold_16:1073358-1080428(+) (11)//scaffold_16:1097285-1097831(+) (11)	POPTR_0016s02230 (8)//POPTR_0016s02220 (7)	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22380.1	UDP-glucosyl transferase 85A3 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225015.1.S1_at	A	A1TS	POPTR_0016s02970	POPTR_0016s02970 (11)	scaffold_16:1494962-1495505(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g47240.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	AC233576_1.1	Protein kinase; AC233576.2 1048-3881 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225016.1.S1_s_at	A	A1TS	POPTR_0016s04630	POPTR_0016s04630 (11)	scaffold_16:2717851-2718444(-) (11)	NA	NA	NA	AT5G22355.1	Cysteine/Histidine-rich C1 domain family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225017.1.S1_at	A	A1TS	POPTR_0016s04400	POPTR_0016s04400 (11)	scaffold_16:2550645-2550750(+) (10)//scaffold_16:2585615-2585720(+) (11)	POPTR_0016s04780 (8)//POPTR_0016s04360 (6)	NA	NA	AT5G22355.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g41930.1	"DC1 domain-containing protein, putative"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.225019.1.S1_at	A	A1TS	POPTR_0016s05030	POPTR_0016s05030 (11)	scaffold_16:3056570-3057136(-) (11)	NA	Q42798	Cytochrome P450 93A1	AT5G06900.1	"cytochrome P450, family 93, subfamily D, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g111290.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225020.1.S1_at	A	A1TS	POPTR_0016s05110	POPTR_0016s05110 (11)	scaffold_16:3093859-3094214(-) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr1g132770.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.225021.1.S1_at	A	A1TS	POPTR_0016s05290	POPTR_0016s05290 (11)	scaffold_16:3216313-3216910(+) (11)	NA	Q0WW21	Anthocyanin 5-O-glucosyltransferase	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225021.1.S1_x_at	A	A1TS	POPTR_0016s05290	POPTR_0016s05290 (11)	scaffold_16:3216313-3216910(+) (11)	NA	Q0WW21	Anthocyanin 5-O-glucosyltransferase	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225022.1.S1_at	A	A1TS	POPTR_0016s05390	POPTR_0016s05390 (11)	scaffold_16:3326955-3327552(+) (11)	NA	Q9LTF4	Putative pentatricopeptide repeat-containing protein At5g52630	AT5G52630.1	mitochondrial RNAediting factor 1 	LOC_Os01g46230.1	"tetratricopeptide-like helical, putative"	Medtr7g110740.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225023.1.S1_at	A	A1TS	POPTR_0016s05820	POPTR_0016s05820 (11)	scaffold_16:3741657-3742173(-) (11)	NA	NA	NA	AT5G22355.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g41930.1	"DC1 domain-containing protein, putative"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.225024.1.S1_at	A	A1TS	POPTR_0016s05900	POPTR_0016s05900 (9)	scaffold_16:3852046-3854753(+) (10)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G38180.1	FAR1-related sequence 5 	LOC_Os06g07010.1	"transposon protein, putative, unclassified, expressed"	Medtr5g106890.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.225025.1.S1_at	A	A1TS	POPTR_0016s05960	POPTR_0016s05960 (11)	scaffold_16:3896844-3897961(-) (11)	NA	P93749	Probable protein kinase At2g41970	AT2G41970.1	Protein kinase superfamily protein 	LOC_Os02g35760.2	"STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed"	Medtr7g112280.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225026.1.S1_at	A	A1TS	POPTR_0016s07080	POPTR_0016s07080 (11)	scaffold_16:4928121-4929192(+) (11)	NA	Q9SRM9	Aluminum-activated malate transporter 8	AT3G11680.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105110.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225031.1.S1_at	A	A1TS	POPTR_0016s10510	POPTR_0016s10510 (11)	scaffold_16:8823462-8823724(+) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G55550.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os12g38610.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225032.1.S1_at	A	A2TS	POPTR_0016s11520	POPTR_0016s11520 (11)//POPTR_0091s00270 (11)	scaffold_16:10714755-10714859(+) (11)//scaffold_91:58714-58818(-) (11)	POPTR_0016s11540 (7)	Q9SR40	Laccase-7	AT3G09220.1	laccase 7 	LOC_Os12g15920.1	"laccase precursor protein, putative, expressed"	Medtr5g020510.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225032.1.S1_s_at	A	A3TS	POPTR_0016s11500	POPTR_0016s11520 (11)//POPTR_0091s00270 (11)//POPTR_0016s11500 (11)	scaffold_16:10626786-10627309(+) (11)//scaffold_16:10714309-10714832(+) (11)//scaffold_91:58741-59264(-) (11)	POPTR_0016s11540 (8)	Q9SR40	Laccase-7	AT3G09220.1	laccase 7 	LOC_Os12g15920.1	"laccase precursor protein, putative, expressed"	Medtr5g020510.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225033.1.S1_at	A	A1TS	POPTR_0016s12170	POPTR_0016s12170 (11)	scaffold_16:11509165-11509891(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05960.1	"receptor kinase, putative, expressed"	Medtr3g024750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225034.1.S1_at	A	A1TS	POPTR_0016s12900	POPTR_0016s12900 (10)	scaffold_16:12236041-12236418(-) (10)	NA	Q9M6N7	Ammonium transporter 2	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr7g075790.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.225037.1.S1_at	A	A1TS	POPTR_0016s13330	POPTR_0016s13330 (11)	scaffold_16:12530765-12531735(+) (11)	NA	NA	NA	AT2G38320.1	TRICHOME BIREFRINGENCE-LIKE 34 	LOC_Os03g60300.1	expressed protein	Medtr7g076130.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225038.1.S1_at	A	A1TS	POPTR_0016s13810	POPTR_0016s13810 (11)	scaffold_16:12957673-12958560(+) (11)	NA	Q9LZX1	Protein LURP-one-related 15	AT5G01750.2	Protein of unknown function (DUF567) 	LOC_Os07g12730.1	"DUF567 domain containing protein, putative, expressed"	Medtr7g077600.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225042.1.S1_at	A	A1TS	POPTR_0017s11140	POPTR_0017s11140 (11)	scaffold_17:10798440-10799179(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT3G28470.1	Duplicated homeodomain-like superfamily protein 	LOC_Os03g18480.1	"MYB family transcription factor, putative, expressed"	Medtr6g010080.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225043.1.S1_s_at	A	A2TS	POPTR_0004s08880	POPTR_0008s20505 (10)//POPTR_0004s08880 (10)	scaffold_1:14726652-14726869(+) (11)//scaffold_1:15846497-15846678(-) (10)//scaffold_1:21101110-21101242(-) (9)//scaffold_1:40320157-40320374(+) (11)//scaffold_1:40333999-40334216(+) (11)//scaffold_10:88308-88489(+) (9)//scaffold_11:2957611-2957792(+) (10)//scaffold_11:4772281-4772498(+) (11)//scaffold_11:6678490-6678671(-) (9)//scaffold_11:13802957-13803138(-) (10)//scaffold_12:2568720-2568937(-) (11)//scaffold_13:9428038-9428219(-) (10)//scaffold_15:1969728-1969909(+) (10)//scaffold_17:12780305-12780522(+) (11)//scaffold_17:13310476-13310693(+) (11)//scaffold_18:5814246-5814461(+) (9)//scaffold_18:9453767-9453984(+) (11)//scaffold_19:8673474-8673691(+) (10)//scaffold_2:17722631-17722848(-) (11)//scaffold_3:6697405-6697622(+) (10)//scaffold_4:7459998-7460179(+) (10)//scaffold_4:8559802-8560019(+) (9)//scaffold_5:4211974-4212191(-) (11)//scaffold_5:18202355-18202572(-) (10)//scaffold_5:18962962-18963179(-) (11)//scaffold_638:4955-5172(+) (11)//scaffold_7:7397147-7397328(-) (10)//scaffold_7:7890549-7890730(-) (10)//scaffold_773:5358-5575(-) (11)//scaffold_8:13690625-13690842(-) (10)//scaffold_8:14263073-14263290(+) (10)	POPTR_0004s15266 (7)//POPTR_0015s02590 (7)//POPTR_0014s05845 (6)	NA	NA	AT4G15020.2	hAT transposon superfamily 	LOC_Os09g32380.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	GO:0003677|DNA binding	NA
PtpAffx.225048.1.S1_at	A	A1TS	POPTR_0018s07670	POPTR_0018s07670 (11)	scaffold_18:8317953-8318197(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22505.1.S1_at	A	A1TS	POPTR_0005s06800	POPTR_0005s06800 (9)	scaffold_5:4554559-4555100(-) (9)	NA	Q9ZUE0	Proline-rich receptor-like protein kinase PERK12	AT5G63940.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os12g07990.1	"protein kinase family protein, putative"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225050.1.S1_at	A	A1TS	POPTR_0018s04870	POPTR_0018s04870 (11)	scaffold_18:4245958-4247420(+) (11)	NA	Q54J73	Poly(A) polymerase	AT2G25850.4	poly(A) polymerase 2 	LOC_Os06g36360.3	expressed protein	Medtr3g128240.1	"DNA polymerase, beta-like region; Poly(A) polymerase, RNA-binding region; Poly(A) polymerase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.225052.1.S1_at	A	A1TS	POPTR_0018s08500	POPTR_0018s08500 (11)	scaffold_18:9449707-9450532(+) (11)	NA	Q9SEI0	Transcription factor WER	AT5G14750.1	myb domain protein 66 	LOC_Os06g10350.1	"MYB family transcription factor, putative, expressed"	Medtr8g105480.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225054.1.S1_at	A	A1TS	POPTR_0018s00430	POPTR_0018s00430 (11)	scaffold_18:329833-330412(+) (11)	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr2g122680.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.225055.1.S1_at	A	A1TS	POPTR_0018s00440	POPTR_0018s00440 (11)	scaffold_18:351148-351695(+) (11)	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr2g122630.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.225056.1.S1_at	A	A1TS	POPTR_0018s00490	POPTR_0018s00490 (11)	scaffold_18:441444-441928(+) (11)	NA	Q8LPL2	Probable peptide/nitrate transporter At3g16180	AT3G16180.1	Major facilitator superfamily protein 	LOC_Os11g23890.1	"peptide transporter PTR2, putative"	Medtr2g122630.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.225057.1.S1_at	A	A1TS	POPTR_0018s00500	POPTR_0018s00500 (10)	scaffold_18:445968-446509(+) (11)	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr1g010210.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.225059.1.S1_at	A	A1TS	POPTR_0018s01180	POPTR_0018s01180 (11)	scaffold_18:1092099-1092772(+) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr7g140920.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.225060.1.S1_at	A	A1TS	POPTR_0018s01240	POPTR_0018s01240 (11)	scaffold_18:1203063-1203570(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os02g11760.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr3g136320.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.225061.1.S1_s_at	A	A1TS	POPTR_0018s01340	POPTR_0018s01340 (11)	scaffold_18:1303524-1304236(+) (11)	NA	O22567	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT5G11380.1	1-deoxy-D-xylulose 5-phosphate synthase 3 	LOC_Os06g05100.2	"transketolase, putative, expressed"	Medtr3g136470.1	"Transketolase, C-terminal "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.225062.1.S1_at	A	A1TS	POPTR_0018s01600	POPTR_0018s01600 (11)	scaffold_18:1499735-1500307(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os02g48210.1	"lectin-like protein kinase, putative, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225063.1.S1_at	A	A1TS	POPTR_0018s01750	POPTR_0018s01750 (11)	scaffold_18:1587499-1588078(-) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os06g29810.3	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225063.1.S1_s_at	A	A2TS	POPTR_0006s27070	POPTR_0018s01750 (11)//POPTR_0006s27070 (11)	scaffold_18:1587519-1588038(-) (11)//scaffold_6:25083750-25084269(-) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os06g29810.3	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225064.1.S1_s_at	A	A1TS	POPTR_0018s02450	POPTR_0018s02450 (11)	scaffold_18:2225336-2226051(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12450.1	"receptor-like protein kinase 2 precursor, putative"	Medtr8g078000.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225065.1.S1_at	A	A1TS	POPTR_0018s02600	POPTR_0018s02600 (11)	scaffold_18:2359006-2360148(-) (11)	NA	Q7TMR0	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os06g43930.1	"OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.225069.1.S1_at	A	A1TS	POPTR_0018s03380	POPTR_0018s03380 (11)	scaffold_18:2979120-2979660(-) (11)	NA	Q9SJA4	Probable cyclic nucleotide-gated ion channel 14	AT2G24610.1	cyclic nucleotide-gated channel 14 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.225070.1.S1_at	A	A2TS	POPTR_0018s06270	POPTR_0018s12520 (11)//POPTR_0018s06270 (11)	scaffold_18:6003732-6003842(+) (11)//scaffold_18:13030897-13031007(+) (11)	NA	NA	NA	AT4G13370.1	Plant protein of unknown function (DUF936) 	LOC_Os11g02740.1	expressed protein	Medtr4g092550.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225070.1.S1_s_at	A	A2TS	POPTR_0018s06270	POPTR_0018s12520 (11)//POPTR_0018s06270 (11)	scaffold_18:6003829-6004090(+) (11)//scaffold_18:13030994-13031255(+) (11)	NA	NA	NA	AT4G13370.1	Plant protein of unknown function (DUF936) 	LOC_Os11g02740.1	expressed protein	Medtr4g092550.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225072.1.S1_at	A	A1TS	POPTR_0018s09220	POPTR_0018s09220 (11)	scaffold_18:10096697-10097391(+) (11)	NA	Q8GW61	Sugar transport protein 14	AT1G77210.2	sugar transporter 14 	LOC_Os09g15330.2	"transporter family protein, putative, expressed"	Medtr4g159350.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.225073.1.S1_s_at	A	A3TS	POPTR_0018s09510	POPTR_0018s09510 (11)//POPTR_0018s09540 (11)//POPTR_0018s09520 (10)	scaffold_18:10401958-10402594(+) (11)//scaffold_18:10430173-10430809(+) (11)//scaffold_18:10461515-10462153(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os02g12910.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr3g128260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225074.1.S1_at	A	A1TS	POPTR_0018s09540	POPTR_0018s09540 (11)	scaffold_18:10462207-10462272(+) (11)	POPTR_0018s09510 (7)	Q9SGP2	Receptor-like protein kinase HSL1	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os02g12910.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr3g128260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225075.1.S1_at	A	A1TS	POPTR_0018s09550	POPTR_0018s09550 (11)	scaffold_18:10489735-10490319(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os02g12910.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr6g083910.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225076.1.S1_at	A	A1TS	POPTR_0018s09830	POPTR_0018s09830 (11)	scaffold_18:10890706-10891090(-) (11)	NA	Q9FID5	Probable receptor-like protein kinase At5g39030	AT5G38280.1	PR5-like receptor kinase 	LOC_Os04g56110.1	"protein kinase, putative, expressed"	Medtr2g041340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225077.1.S1_at	A	A1TS	POPTR_0018s09860	POPTR_0018s09860 (11)	scaffold_18:10919192-10920183(-) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT2G18890.1	Protein kinase superfamily protein 	LOC_Os04g56060.1	"protein kinase domain containing protein, expressed"	Medtr8g129250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225078.1.S1_at	A	A1TS	POPTR_0018s10400	POPTR_0018s10400 (11)	scaffold_18:11338789-11339387(-) (11)	NA	A6XNC6	Flavonoid 3-O-glucosyltransferase	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128440.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008152|metabolic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.225079.1.S1_at	A	A1TS	POPTR_0018s10660	POPTR_0018s10660 (11)	scaffold_18:11546165-11546719(-) (11)	NA	Q8L7Z0	Probable cyclic nucleotide-gated ion channel 17	AT4G30360.1	cyclic nucleotide-gated channel 17 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225080.1.S1_s_at	A	A3TS	POPTR_0011s13070	POPTR_0018s11990 (11)//POPTR_0011s13070 (11)//POPTR_0011s13090 (11)	scaffold_11:15786686-15787386(+) (11)//scaffold_11:15804764-15805464(+) (11)//scaffold_18:12626595-12627295(+) (11)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g053110.3	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225081.1.S1_s_at	A	A2TS	POPTR_0011s13080	POPTR_0011s13100 (11)//POPTR_0011s13080 (11)	scaffold_11:15799984-15800672(+) (11)//scaffold_11:15814361-15815067(+) (11)	NA	Q9LDQ3	Putative cysteine-rich receptor-like protein kinase 35	AT4G11530.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 34 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052620.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225082.1.S1_s_at	A	A1TS	POPTR_0018s12130	POPTR_0018s12130 (11)	scaffold_18:12709114-12709746(-) (11)	NA	Q10710	Sugar carrier protein A	AT4G02050.1	sugar transporter protein 7 	LOC_Os09g24924.1	"transporter family protein, putative, expressed"	Medtr8g122780.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.225083.1.S1_at	A	A1TS	POPTR_0018s12440	POPTR_0018s12440 (11)	scaffold_173:13697-13884(-) (11)//scaffold_18:12918204-12918391(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G07390.1	receptor like protein 1 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225084.1.S1_s_at	A	A3TS	POPTR_0025s00300	POPTR_1763s00200 (11)//POPTR_0025s00300 (11)//POPTR_0204s00200 (11)	scaffold_1763:3654-3717(-) (11)//scaffold_204:1460-1523(-) (11)//scaffold_25:89215-89278(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G07390.3	receptor like protein 1 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_74.1	Leucine-rich repeat AC233100.6 329525-327081 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225085.1.S1_s_at	A	A1TS	POPTR_0018s12460	POPTR_0018s12460 (11)	scaffold_18:12932210-12932300(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT1G07390.2	receptor like protein 1 	LOC_Os02g02490.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr3g166710.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225088.1.S1_x_at	A	A1TS	POPTR_0025s00710	POPTR_0025s00710 (9)	scaffold_25:369197-369718(-) (9)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G07390.2	receptor like protein 1 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166620.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225089.1.S1_at	A	A1TS	POPTR_0018s12680	POPTR_0018s12680 (11)	scaffold_18:13194108-13194702(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os03g52310.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.225090.1.S1_at	A	A1TS	POPTR_0018s12690	POPTR_0018s12690 (11)	scaffold_18:13200100-13200626(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os03g52310.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.225091.1.S1_x_at	A	A1TS	POPTR_0018s12780	POPTR_0018s12780 (11)	scaffold_18:13292864-13293511(-) (11)	NA	Q9LTF7	Transcription factor MYB82	AT5G52600.1	myb domain protein 82 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225092.1.S1_at	A	A1TS	POPTR_0018s13150	POPTR_0018s13150 (11)	scaffold_18:13596761-13597359(+) (11)	NA	O80822	Peroxidase 25	AT2G41480.1	Peroxidase superfamily protein 	LOC_Os01g07770.1	"peroxidase precursor, putative"	Medtr8g120300.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.225093.1.S1_at	A	A1TS	POPTR_0018s13280	POPTR_0018s13280 (11)	scaffold_18:13660862-13661635(+) (11)	NA	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	AT1G56140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os04g56360.1	"cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed"	Medtr8g130230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225095.1.S1_at	A	A1TS	POPTR_0018s13390	POPTR_0018s13390 (11)	scaffold_18:13721937-13722653(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225095.1.S1_s_at	A	A2TS	POPTR_0018s13380	POPTR_0018s13380 (11)//POPTR_0018s13390 (11)	scaffold_18:13713360-13714059(+) (11)//scaffold_18:13722191-13722893(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225096.1.S1_at	A	A2TS	POPTR_0018s13420	POPTR_0018s13420 (11)//POPTR_0018s13490 (11)	scaffold_18:13737080-13738228(-) (11)//scaffold_18:13807039-13808033(-) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225096.1.S1_s_at	A	A3TS	POPTR_0018s13420	POPTR_0018s13420 (11)//POPTR_0018s13450 (11)//POPTR_0018s13490 (9)	scaffold_18:13736850-13737851(-) (11)//scaffold_18:13774358-13775185(-) (11)//scaffold_18:13806809-13807668(-) (9)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225097.1.S1_at	A	A1TS	POPTR_0018s13450	POPTR_0018s13450 (11)	scaffold_18:13775010-13775477(-) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225098.1.S1_at	A	A1TS	POPTR_0018s13580	POPTR_0018s13580 (11)	scaffold_18:13852022-13858206(-) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225100.1.S1_x_at	A	A1TS	POPTR_0018s14100	POPTR_0018s14100 (9)	scaffold_18:14375396-14375833(+) (9)	POPTR_0008s18720 (8)	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT1G58190.2	receptor like protein 9 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225101.1.S1_x_at	A	A1TS	POPTR_0018s14150	POPTR_0018s14150 (11)	scaffold_18:14418563-14418763(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT1G58190.2	receptor like protein 9 	LOC_Os06g04830.1	"leucine rich repeat protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225102.1.S1_s_at	A	A1TS	POPTR_0019s09780	POPTR_0019s09780 (11)	scaffold_19:11378938-11379287(+) (11)//scaffold_19:11486565-11486900(+) (11)	POPTR_0019s09870 (8)	Q40392	TMV resistance protein N	AT3G44480.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.1	expressed protein	Medtr5g038670.1	TIR 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.225103.1.S1_at	A	A1TS	POPTR_0003s11400	POPTR_0003s11400 (11)	scaffold_3:12218678-12219098(-) (11)	NA	Q9ZW07	Pumilio homolog 1	AT2G29200.1	pumilio 1 	LOC_Os01g62650.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr4g084270.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.225105.1.S1_s_at	A	A2TS	POPTR_0011s13190	POPTR_0011s13220 (11)//POPTR_0011s13190 (11)	scaffold_11:15894291-15894853(-) (11)//scaffold_11:15922488-15923047(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020990.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225107.1.S1_at	A	A1TS	POPTR_0003s18810	POPTR_0003s18810 (11)	scaffold_3:17736893-17741588(+) (11)	NA	P52836	Flavonol 3-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.225107.1.S1_x_at	A	A1TS	POPTR_0003s18810	POPTR_0003s18810 (11)	scaffold_3:17736722-17741588(+) (11)	NA	P52836	Flavonol 3-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.225108.1.S1_x_at	A	A2TS	POPTR_0004s03580	POPTR_0016s08340 (11)//POPTR_0004s03580 (11)	scaffold_15:13601313-13601502(-) (11)//scaffold_16:6150107-6150296(-) (11)//scaffold_4:2483251-2483440(-) (11)//scaffold_5:24040777-24040966(+) (11)	POPTR_0005s20440 (8)//POPTR_0039s00365 (8)//POPTR_0002s19310 (8)//POPTR_0001s32700 (6)	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os01g08610.1	"hAT dimerisation domain-containing protein, putative"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.225109.1.S1_at	A	A1TS	POPTR_0011s10420	POPTR_0011s10420 (11)	scaffold_11:12866761-12866975(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05870.1	"receptor kinase, putative, expressed"	Medtr5g019030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225109.1.S1_s_at	A	A3TS	POPTR_0011s10420	POPTR_0011s10430 (11)//POPTR_0011s10420 (11)//POPTR_0141s00210 (11)	scaffold_11:12866473-12866874(+) (11)//scaffold_11:12880092-12880493(+) (11)//scaffold_141:45204-45605(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05870.1	"receptor kinase, putative, expressed"	Medtr5g019030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225110.1.S1_x_at	A	A1TS	POPTR_0011s03000	POPTR_0011s03000 (11)	scaffold_11:2963955-2964384(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225111.1.S1_x_at	A	A2TS	POPTR_0004s15890	POPTR_0004s15890 (11)//POPTR_0008s22220 (11)	scaffold_4:16408922-16409009(-) (11)//scaffold_8:16627032-16627119(+) (11)	POPTR_0006s13090 (8)//POPTR_0001s18450 (6)	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os10g02910.1	"transposon protein, putative, unclassified, expressed"	Medtr3g064360.1	"Tam3-like transposon protein; 93317-95488, related "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.225113.1.S1_at	A	A1MS	POPTR_0011s04980	POPTR_0011s04980 (11)	scaffold_11:4944007-4944050(-) (11)	POPTR_0011s04970 (7)	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.225113.1.S1_s_at	A	A2TS	POPTR_0011s04970	POPTR_0011s04980 (11)//POPTR_0011s04970 (11)	scaffold_11:4930348-4930855(-) (11)//scaffold_11:4943360-4943856(-) (11)	NA	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.225114.1.S1_at	A	A1MS	POPTR_0006s28570	POPTR_0006s28570 (11)	scaffold_6:26240728-26240959(-) (11)	NA	Q9SJA4	Probable cyclic nucleotide-gated ion channel 14	AT2G24610.1	cyclic nucleotide-gated channel 14 	LOC_Os06g08850.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225114.1.S1_x_at	A	A1MS	POPTR_0006s28570	POPTR_0006s28570 (11)	scaffold_6:26240649-26240958(-) (11)	NA	Q9SJA4	Probable cyclic nucleotide-gated ion channel 14	AT2G24610.1	cyclic nucleotide-gated channel 14 	LOC_Os06g08850.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225115.1.S1_at	A	A1TS	POPTR_0006s02020	POPTR_0006s02020 (11)	scaffold_6:1235055-1235490(-) (11)	NA	NA	NA	AT4G16380.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr8g148830.1	Heavy metal transport/detoxification protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225115.1.S1_x_at	A	A1TS	POPTR_0006s02020	POPTR_0006s02020 (11)	scaffold_6:1234987-1235490(-) (11)	NA	NA	NA	AT4G16380.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr8g148830.1	Heavy metal transport/detoxification protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225119.1.S1_at	A	A1TS	POPTR_0001s28320	POPTR_0001s28320 (11)	scaffold_1:27118797-27119003(-) (11)	NA	Q9LFC5	Pentatricopeptide repeat-containing protein At5g01110	AT5G01110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06910.1	PPR repeat containing protein	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225122.1.S1_at	A	A1TS	POPTR_0001s41550	POPTR_0001s41550 (11)	scaffold_1:41161581-41162400(-) (11)	NA	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225122.1.S1_s_at	A	A3TS	POPTR_0001s41540	POPTR_0001s41570 (11)//POPTR_0001s41550 (11)//POPTR_0001s41540 (11)	scaffold_1:41147438-41148033(-) (11)//scaffold_1:41161815-41162421(-) (11)//scaffold_1:41242971-41243566(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.225123.1.S1_at	A	A1TS	POPTR_0001s41560	POPTR_0001s41560 (11)	scaffold_1:41202039-41202143(-) (11)	NA	Q940K0	Probable disease resistance protein At1g61180	AT1G61180.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.225123.1.S1_x_at	A	A1TS	POPTR_0001s41560	POPTR_0001s41560 (11)	scaffold_1:41201983-41202468(-) (11)	NA	Q940K0	Probable disease resistance protein At1g61180	AT1G61180.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.225125.1.S1_at	A	A1TS	POPTR_0115s00260	POPTR_0115s00260 (9)	scaffold_115:41207-41732(-) (9)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31530.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225131.1.S1_at	A	A1TS	POPTR_0025s00270	POPTR_0025s00270 (11)	scaffold_25:63314-63845(+) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT1G74190.1	receptor like protein 15 	LOC_Os01g41780.1	expressed protein	AC233100_74.1	Leucine-rich repeat AC233100.6 329525-327081 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225132.1.S1_s_at	A	A4TS	POPTR_0005s03040	POPTR_0005s03330 (11)//POPTR_0005s03040 (11)//POPTR_0005s03291 (11)//POPTR_0005s03160 (11)	scaffold_5:1989945-1989995(-) (11)//scaffold_5:2006094-2006144(-) (11)//scaffold_5:2074426-2074476(-) (11)//scaffold_5:2107865-2107915(-) (11)//scaffold_5:2127373-2127618(-) (10)//scaffold_5:2143630-2143680(-) (11)//scaffold_5:2152393-2152443(-) (11)//scaffold_5:2162710-2162760(-) (11)//scaffold_5:2185282-2185332(-) (11)//scaffold_5:2236704-2236754(-) (11)//scaffold_5:2355004-2355274(-) (11)	NA	Q40392	TMV resistance protein N	AT4G16990.1	"disease resistance protein (TIR-NBS class), putative "	LOC_Os07g37950.1	expressed protein	Medtr5g038750.1	TIR 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.225133.1.S1_at	A	A1TS	POPTR_0001s23440	POPTR_0001s23440 (11)	scaffold_1:22804810-22804869(-) (11)//scaffold_1:22809551-22809605(-) (10)//scaffold_117:22479-22533(+) (10)	NA	A2SY66	Vicianin hydrolase (Fragment)	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39880.1	"Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed"	Medtr3g031570.1	"Glycoside hydrolase, family 1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225134.1.S1_x_at	A	A1TS	POPTR_0010s03950	POPTR_0010s03950 (11)	scaffold_10:4668245-4668790(+) (11)//scaffold_11:12726032-12726289(+) (11)//scaffold_12:6056750-6056971(+) (11)//scaffold_13:8164686-8164943(+) (10)//scaffold_13:9828321-9834805(+) (11)//scaffold_136:51271-51492(-) (11)//scaffold_14:14890798-14891487(+) (11)//scaffold_14:17558989-17559164(+) (10)//scaffold_14:17569125-17569336(+) (10)//scaffold_15:2348103-2348504(+) (10)//scaffold_15:2357469-2357654(+) (10)//scaffold_15:7452658-7452843(-) (11)//scaffold_19:7795081-7795500(-) (9)//scaffold_19:7824301-7824594(+) (11)//scaffold_19:7829742-7838232(+) (10)//scaffold_19:9135059-9135244(+) (11)//scaffold_2:17408251-17408580(+) (11)//scaffold_2:17538902-17539339(+) (11)//scaffold_2:17578666-17578805(-) (10)//scaffold_2:19973160-19973417(+) (11)//scaffold_2:19973232-19981624(+) (11)//scaffold_2166:404-661(-) (11)//scaffold_24:314673-314858(+) (10)//scaffold_2481:501-686(+) (11)//scaffold_534:8932-9153(-) (11)//scaffold_544:7724-13757(-) (11)//scaffold_544:13536-13747(-) (10)//scaffold_6:14742338-14742474(-) (9)//scaffold_6:20827959-20828180(-) (11)//scaffold_7:8193388-8193608(-) (11)//scaffold_7:8337649-8337798(-) (11)//scaffold_8:14462965-14463186(-) (11)//scaffold_8:16185927-16186220(+) (11)//scaffold_9:157388-157524(+) (9)//scaffold_9:371547-374815(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.225137.1.S1_s_at	A	A1TS	POPTR_0019s01120	POPTR_0019s01120 (11)	scaffold_19:851017-851524(+) (11)	NA	O65238	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370	AT5G35370.1	S-locus lectin protein kinase family protein 	LOC_Os09g28180.1	"D-mannose binding lectin family protein, expressed"	Medtr3g097890.1	Protein kinase; Curculin-like (mannose-binding) lectin; N/apple PAN 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225138.1.S1_at	A	A2TS	POPTR_0019s01290	POPTR_0019s01290 (9)//POPTR_0019s03980 (9)	scaffold_19:1120392-1121465(+) (10)//scaffold_19:4086656-4086825(+) (9)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT4G16740.1	terpene synthase 03 	LOC_Os08g07100.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.225139.1.S1_at	A	A1TS	POPTR_0019s01320	POPTR_0019s01320 (11)	scaffold_19:1159089-1159541(-) (11)	NA	P59287	"Casbene synthase, chloroplastic"	AT5G23960.2	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.225139.1.S1_s_at	A	A12TS	POPTR_0019s01320	POPTR_0019s03990 (11)//POPTR_0121s00250 (11)//POPTR_0019s01320 (11)//POPTR_0019s01440 (11)//POPTR_0019s06220 (11)//POPTR_0019s06190 (11)//POPTR_0408s00200 (11)//POPTR_0019s06210 (11)//POPTR_0019s03290 (11)//POPTR_0019s03310 (10)//POPTR_0019s03350 (9)//POPTR_0019s06170 (9)	scaffold_121:49898-50473(+) (11)//scaffold_19:1158416-1158945(-) (11)//scaffold_19:1255580-1256152(-) (11)//scaffold_19:3328813-3329374(+) (11)//scaffold_19:3354775-3355373(+) (11)//scaffold_19:3410786-3411130(-) (9)//scaffold_19:4107068-4107597(-) (11)//scaffold_19:6730800-6731311(-) (11)//scaffold_19:6752258-6752738(-) (11)//scaffold_19:6804840-6805296(+) (11)//scaffold_19:6831655-6832135(+) (11)//scaffold_408:6845-7513(-) (11)	POPTR_0170s00210 (7)	P59287	"Casbene synthase, chloroplastic"	AT5G23960.2	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.225140.1.S1_s_at	A	A3TS	POPTR_0019s01350	POPTR_0019s01350 (11)//POPTR_0019s01470 (11)//POPTR_0019s01410 (11)	scaffold_19:1192683-1192902(+) (11)//scaffold_19:1224893-1225112(+) (11)//scaffold_19:1280009-1280228(+) (11)//scaffold_19:1297058-1297277(+) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.225142.1.S1_s_at	A	A1TS	POPTR_0019s01520	POPTR_0019s01520 (11)	scaffold_19:1340059-1340535(+) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g43040.2	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.225143.1.S1_at	A	A2TS	POPTR_0019s01560	POPTR_0182s00240 (11)//POPTR_0019s01560 (11)	scaffold_182:34371-34752(-) (11)//scaffold_19:1380100-1380481(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os09g13820.1	"pollen signalling protein with adenylyl cyclase activity, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225144.1.S1_s_at	A	A2TS	POPTR_0019s01570	POPTR_0182s00230 (11)//POPTR_0019s01570 (11)	scaffold_182:20367-20415(-) (11)//scaffold_19:1391059-1391107(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225146.1.S1_at	A	A1TS	POPTR_0019s01640	POPTR_0019s01640 (11)	scaffold_19:1446611-1447124(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g35254.1	"transposon protein, putative, CACTA, En/Spm sub-class"	Medtr3g021390.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225147.1.S1_at	A	A1TS	POPTR_0019s01650	POPTR_0019s01650 (11)	scaffold_19:1454474-1455031(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225148.1.S1_at	A	A1TS	POPTR_0019s01670	POPTR_0019s01670 (11)	scaffold_19:1463831-1464391(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225149.1.S1_s_at	A	A2TS	POPTR_0019s01880	POPTR_0019s01880 (11)//POPTR_0019s01930 (10)	scaffold_19:1631580-1632819(+) (11)//scaffold_19:1707873-1709307(+) (10)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225150.1.S1_at	A	A1TS	POPTR_0019s01930	POPTR_0019s01930 (11)	scaffold_19:1709248-1709507(+) (11)	POPTR_0019s01880 (8)	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225153.1.S1_at	A	A1TS	POPTR_0003s08250	POPTR_0003s08250 (11)	scaffold_3:9675859-9676507(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os10g41510.1	"calcineurin B, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225155.1.S1_x_at	A	A1TS	POPTR_0015s02530	POPTR_0015s02530 (11)	scaffold_15:1813584-1813761(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225157.1.S1_at	A	A1TS	POPTR_0010s24330	POPTR_0010s24330 (11)	scaffold_10:20600310-20600658(+) (11)	NA	Q02200	Lignin-forming anionic peroxidase	AT1G14550.1	Peroxidase superfamily protein 	LOC_Os02g14430.1	"peroxidase precursor, putative, expressed"	Medtr4g114950.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.225158.1.S1_s_at	A	A2TS	POPTR_0002s07100	POPTR_0002s07100 (11)//POPTR_0002s08115 (11)	scaffold_1:38296097-38296153(-) (11)//scaffold_15:14103576-14103632(-) (11)//scaffold_2:4829770-4829826(-) (11)//scaffold_2:5607820-5607876(+) (11)	POPTR_0001s19350 (6)	NA	NA	AT4G15020.2	hAT transposon superfamily 	LOC_Os09g32380.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.225159.1.S1_at	A	A1TS	POPTR_0019s13220	POPTR_0019s13220 (10)	scaffold_19:14177066-14177850(-) (10)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12440.1	"receptor kinase, putative, expressed"	Medtr6g038640.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.22516.1.A1_at	A	A1TS	POPTR_0001s03340	POPTR_0001s03340 (11)	scaffold_1:2723577-2723870(-) (11)	NA	NA	NA	AT1G80940.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g55080.1	"snf1-related kinase interactor 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22516.2.S1_a_at	A	A1TS	POPTR_0001s03340	POPTR_0001s03340 (10)	scaffold_1:2726481-2726606(-) (10)	NA	NA	NA	AT1G80940.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g55080.1	"snf1-related kinase interactor 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22516.2.S1_at	A	A1MS	POPTR_0001s03340	POPTR_0001s03340 (10)	scaffold_1:2726290-2726425(-) (10)	NA	NA	NA	AT1G80940.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g55080.1	"snf1-related kinase interactor 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22516.3.A1_at	A	A1TS	POPTR_0001s03330	POPTR_0001s03330 (11)	scaffold_1:2724058-2724604(+) (11)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225160.1.S1_at	A	A1TS	POPTR_0019s13060	POPTR_0019s13060 (11)	scaffold_19:14067477-14067701(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225161.1.S1_at	A	A1TS	POPTR_0019s13030	POPTR_0019s13030 (11)	scaffold_19:14037504-14037860(+) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g05800.1	"retrotransposon protein, putative, unclassified"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225163.1.S1_s_at	A	A10TS	POPTR_0001s14655	POPTR_0001s14655 (11)//POPTR_0010s00872 (11)//POPTR_0007s10360 (11)//POPTR_0010s07220 (11)//POPTR_0001s44370 (11)//POPTR_0003s01520 (11)//POPTR_0015s03155 (11)//POPTR_0001s42900 (11)//POPTR_0016s09365 (11)//POPTR_0006s18585 (10)	scaffold_1:11521476-11521512(-) (11)//scaffold_1:38138934-38138970(+) (11)//scaffold_1:42996608-42996644(+) (11)//scaffold_1:44798721-44798757(-) (11)//scaffold_10:567006-567042(-) (11)//scaffold_10:8354672-8354708(+) (11)//scaffold_11:8093555-8093591(-) (11)//scaffold_15:2716982-2717018(+) (11)//scaffold_15:6505656-6505692(-) (11)//scaffold_16:7386686-7386722(-) (11)//scaffold_3:1378632-1378668(-) (11)//scaffold_4:18303507-18303543(+) (11)//scaffold_5:9715551-9715586(-) (10)//scaffold_5:18183707-18183743(-) (11)//scaffold_6:17112862-17112898(+) (11)//scaffold_7:6975359-6975395(+) (11)//scaffold_7:10240354-10240390(+) (11)	POPTR_0016s03650 (7)	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os11g14270.1	"transposon protein, putative, unclassified"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225165.1.S1_at	A	A1TS	POPTR_0015s05780	POPTR_0015s05780 (11)	scaffold_15:6129343-6129885(+) (11)	NA	Q9FLV4	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080	AT5G24080.1	Protein kinase superfamily protein 	LOC_Os07g36780.1	"S-domain receptor-like protein kinase, putative, expressed"	Medtr1g125840.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225166.1.S1_at	A	A2TS	POPTR_0015s05640	POPTR_0015s05640 (11)//POPTR_0012s03290 (9)	scaffold_12:2609745-2610230(+) (10)//scaffold_15:5980788-5981348(-) (11)	NA	O81974	Cytochrome P450 71D8	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os07g11870.1	"cytochrome P450, putative, expressed"	Medtr3g073830.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225168.1.S1_at	A	A1TS	POPTR_0015s05580	POPTR_0015s05580 (10)	scaffold_15:5927312-5927777(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os01g41770.1	"leucine rich repeat protein, putative, expressed"	Medtr3g034110.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225169.1.S1_at	A	A2TS	POPTR_0018s06950	POPTR_0018s06950 (10)//POPTR_0010s04730 (9)	scaffold_10:5864631-5864860(-) (9)//scaffold_11:12941291-12941520(-) (9)//scaffold_12:3980866-3981095(-) (10)//scaffold_15:5811817-5812046(+) (10)//scaffold_18:7061311-7061540(+) (10)	NA	NA	NA	AT4G15020.2	hAT transposon superfamily 	LOC_Os09g32380.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	GO:0003677|DNA binding	NA
PtpAffx.225170.1.S1_at	A	A1TS	POPTR_0017s09270	POPTR_0017s09270 (11)	scaffold_17:7904905-7904940(+) (11)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os07g35370.1	"TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr1g025630.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225172.1.S1_at	A	A2TS	POPTR_0005s15510	POPTR_0005s15510 (10)//POPTR_0005s15520 (10)	scaffold_5:12168947-12174686(-) (11)//scaffold_5:12174486-12175229(-) (9)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47580.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12400.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g026330.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225173.1.S1_at	A	A1TS	POPTR_0005s15410	POPTR_0005s15410 (11)	scaffold_5:12095519-12096056(+) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38260.1	Protein kinase superfamily protein 	LOC_Os01g49614.1	"Protein kinase domain containing protein, expressed"	Medtr7g093610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225174.1.S1_at	A	A2TS	POPTR_0005s15340	POPTR_0005s15340 (11)//POPTR_0309s00200 (9)	scaffold_309:2089-2507(-) (9)//scaffold_5:12046986-12057659(+) (11)//scaffold_5:12077696-12086468(+) (9)	POPTR_0005s15390 (8)//POPTR_0418s00210 (7)//POPTR_0005s15370 (7)//POPTR_0005s15310 (6)	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g49614.1	"Protein kinase domain containing protein, expressed"	Medtr7g093620.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225175.1.S1_s_at	A	A1TS	POPTR_0008s22430	POPTR_0008s22430 (11)	scaffold_8:16919017-16919476(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g110440.1	TIR; Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225176.1.S1_x_at	A	A1TS	POPTR_0011s02070	POPTR_0011s02070 (11)	scaffold_11:1737158-1737527(-) (11)	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225182.1.S1_s_at	A	A8TS	POPTR_0019s09770	POPTR_0019s09860 (11)//POPTR_0019s09880 (11)//POPTR_0019s09770 (11)//POPTR_0077s00240 (11)//POPTR_0019s09820 (11)//POPTR_0585s00200 (11)//POPTR_0019s09850 (11)//POPTR_0077s00230 (9)	scaffold_19:11371749-11372047(+) (11)//scaffold_19:11410668-11417531(+) (11)//scaffold_19:11417763-11417804(+) (9)//scaffold_19:11452021-11452319(+) (11)//scaffold_19:11480395-11480693(+) (11)//scaffold_19:11499498-11499796(+) (11)//scaffold_585:686-984(-) (11)//scaffold_77:52482-52523(-) (9)//scaffold_77:78071-78369(-) (11)	NA	Q40392	TMV resistance protein N	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os08g16070.1	NB-ARC domain containing protein	Medtr4g118380.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225183.1.S1_at	A	A1TS	POPTR_0019s09760	POPTR_0019s09760 (11)	scaffold_19:11360885-11361572(+) (11)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225184.1.S1_at	A	A1TS	POPTR_1446s00200	POPTR_1446s00200 (11)	scaffold_1446:2126-2484(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g088470.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.225185.1.S1_at	A	A1TS	POPTR_0019s09630	POPTR_0019s09630 (11)	scaffold_19:11229900-11230615(-) (11)	NA	Q40392	TMV resistance protein N	AT5G51630.3	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225186.1.S1_at	A	A1TS	POPTR_0019s09620	POPTR_0019s09620 (11)	scaffold_19:11218667-11219312(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225188.1.S1_at	A	A1TS	POPTR_0019s09570	POPTR_0019s09570 (10)	scaffold_19:11164945-11165537(-) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT5G16370.1	acyl activating enzyme 5 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084090.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.225189.1.S1_s_at	A	A3TS	POPTR_0019s09470	POPTR_0519s00200 (11)//POPTR_0519s00220 (11)//POPTR_0019s09470 (11)	scaffold_19:11011127-11011507(-) (11)//scaffold_19:11023980-11024083(-) (9)//scaffold_519:4479-4897(-) (11)//scaffold_519:12685-13065(-) (11)	NA	Q6H9K0	Exopolygalacturonase (Fragment)	AT3G07820.1	Pectin lyase-like superfamily protein 	LOC_Os02g10300.1	"polygalacturonase, putative, expressed"	Medtr2g074020.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.225196.1.S1_s_at	A	A2TS	POPTR_0011s12840	POPTR_0011s13040 (11)//POPTR_0011s12840 (11)	scaffold_11:15547235-15548023(+) (11)//scaffold_11:15763858-15764646(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021290.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225197.1.S1_s_at	A	A1TS	POPTR_0006s27340	POPTR_0006s27340 (11)	scaffold_6:25276706-25276921(+) (11)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G62930.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225198.1.S1_x_at	A	A1TS	POPTR_0010s03950	POPTR_0010s03950 (10)	scaffold_10:4668618-4668786(+) (10)//scaffold_11:12726105-12726285(+) (11)//scaffold_12:6056808-6056967(+) (9)//scaffold_13:8164816-8164939(+) (9)//scaffold_13:9828326-9834805(+) (10)//scaffold_136:51275-51443(-) (10)//scaffold_14:14891315-14891483(+) (10)//scaffold_14:17559028-17559160(+) (10)//scaffold_14:17569164-17569332(+) (10)//scaffold_15:2348368-2348500(+) (9)//scaffold_15:2357518-2357650(+) (9)//scaffold_15:7452662-7452794(-) (10)//scaffold_19:7795081-7795137(-) (9)//scaffold_19:7824422-7824590(+) (10)//scaffold_19:9135117-9135240(+) (9)//scaffold_2:17408300-17408576(+) (10)//scaffold_2:17539203-17539335(+) (10)//scaffold_2:17578670-17578766(-) (10)//scaffold_2:19973281-19973413(+) (10)//scaffold_2:19981488-19981620(+) (10)//scaffold_2166:408-732(-) (11)//scaffold_2481:559-682(+) (9)//scaffold_534:8936-9095(-) (9)//scaffold_544:7728-7896(-) (10)//scaffold_544:13540-13708(-) (10)//scaffold_6:14742342-14742474(-) (10)//scaffold_6:20827963-20828131(-) (10)//scaffold_7:8337653-8337749(-) (10)//scaffold_8:14462969-14463128(-) (9)//scaffold_8:16186048-16186216(+) (10)//scaffold_9:371547-374757(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.225199.1.S1_s_at	A	A1TS	POPTR_0010s03950	POPTR_0010s03950 (9)	scaffold_10:4668232-4668299(+) (9)//scaffold_10:4668268-4668695(+) (9)//scaffold_10:4668304-4668731(+) (9)//scaffold_9:58620-58713(-) (9)//scaffold_9:58656-58785(-) (9)//scaffold_9:58692-58895(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.225200.1.S1_at	A	A1TS	POPTR_0001s07850	POPTR_0001s07850 (11)	scaffold_1:5948195-5948737(+) (11)	NA	P37120	"Flavonoid 3',5'-hydroxylase"	AT4G12320.1	"cytochrome P450, family 706, subfamily A, polypeptide 6 "	LOC_Os08g43440.1	"cytochrome P450, putative, expressed"	Medtr3g169570.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225202.1.S1_at	A	A1TS	POPTR_0001s00390	POPTR_0001s00390 (11)	scaffold_1:303314-303349(+) (11)	NA	Q940Y1	Oxysterol-binding protein-related protein 2A	AT4G22540.1	OSBP(oxysterol binding protein)-related protein 2A 	LOC_Os08g05870.1	"oxysterol-binding protein-related protein 6, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.225202.1.S1_x_at	A	A1TS	POPTR_0001s00390	POPTR_0001s00390 (11)	scaffold_1:302676-303488(+) (11)	NA	Q940Y1	Oxysterol-binding protein-related protein 2A	AT4G22540.1	OSBP(oxysterol binding protein)-related protein 2A 	LOC_Os08g05870.1	"oxysterol-binding protein-related protein 6, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.225203.1.S1_s_at	A	A1TS	POPTR_0009s01030	POPTR_0009s01030 (11)	scaffold_2:2446952-2447008(+) (10)//scaffold_9:1168509-1168579(+) (11)//scaffold_9:7620278-7620348(-) (11)	NA	A7Y3H6	Protein psbN	ATCG00700.1	photosystem II reaction center protein N 	NA	NA	Medtr2g080790.1	Photosystem II protein PsbN 	GO:0015979|photosynthesis	NA	GO:0009539|photosystem II reaction center
PtpAffx.225204.1.S1_x_at	A	A1TS	POPTR_0015s07020	POPTR_0015s07020 (9)	scaffold_15:8103964-8105064(-) (9)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225207.1.S1_at	A	A1TS	POPTR_0005s00240	POPTR_0005s00240 (11)	scaffold_5:23169-23910(-) (11)	NA	Q8L7S8	"DEAD-box ATP-dependent RNA helicase 3, chloroplastic"	AT5G26742.2	DEAD box RNA helicase (RH3) 	LOC_Os03g61220.1	"DEAD-box ATP-dependent RNA helicase 3, putative, expressed"	Medtr7g134530.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.225208.1.S1_at	A	A1TS	POPTR_0005s00610	POPTR_0005s00610 (11)	scaffold_5:258034-258586(+) (11)	NA	Q40392	TMV resistance protein N	AT1G27170.1	transmembrane receptors;ATP binding 	NA	NA	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.225209.1.S1_at	A	A1TS	POPTR_0005s00800	POPTR_0005s00800 (11)	scaffold_5:365149-365550(-) (11)	NA	Q9FXB9	"Pentatricopeptide repeat-containing protein At1g56690, mitochondrial"	AT1G56690.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g20190.1	"pentatricopeptide, putative, expressed"	Medtr7g080560.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225211.1.S1_at	A	A1TS	POPTR_0005s00830	POPTR_0005s00830 (11)	scaffold_5:386264-386832(+) (11)	NA	C0LGS2	Probable LRR receptor-like serine/threonine-protein kinase At4g36180	AT1G74170.1	receptor like protein 13 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225212.1.S1_at	A	A2TS	POPTR_0005s00880	POPTR_0005s00880 (11)//POPTR_0005s00870 (10)	scaffold_5:397065-397629(-) (10)//scaffold_5:408441-409005(-) (11)	NA	Q9LRR5	Putative disease resistance protein At3g14460	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g021730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225213.1.S1_at	A	A2TS	POPTR_0008s22690	POPTR_0816s00200 (11)//POPTR_0008s22690 (11)	scaffold_8:17373517-17373872(+) (11)//scaffold_816:2417-2772(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os05g33440.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225216.1.S1_at	A	A1TS	POPTR_0005s01750	POPTR_0005s01750 (11)	scaffold_5:1175672-1176209(-) (11)	NA	O04504	Pentatricopeptide repeat-containing protein At1g09820	AT1G09820.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os10g34310.2	"PPR repeat containing protein, expressed"	Medtr8g112650.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225217.1.S1_at	A	A1TS	POPTR_0005s01680	POPTR_0005s01680 (11)	scaffold_5:1127891-1128450(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225218.1.S1_at	A	A1TS	POPTR_0005s01670	POPTR_0005s01670 (10)	scaffold_1:48287577-48289156(-) (9)//scaffold_5:1120983-1122530(+) (10)	POPTR_0001s47860 (6)	C0LGP9	Probable leucine-rich repeat receptor-like protein kinase IMK3	AT2G25470.1	receptor like protein 21 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225219.1.S1_at	A	A1TS	POPTR_1122s00200	POPTR_1122s00200 (11)	scaffold_1122:2582-2797(+) (11)	NA	Q9LHP4	Receptor-like protein kinase 2	AT1G07390.3	receptor like protein 1 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166620.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225220.1.S1_s_at	A	A5TS	POPTR_0013s12270	POPTR_0019s12650 (11)//POPTR_0019s12630 (11)//POPTR_0013s12270 (11)//POPTR_2085s00200 (11)//POPTR_0019s12620 (11)	scaffold_13:12869103-12869224(-) (11)//scaffold_19:13634338-13634459(+) (11)//scaffold_19:13640512-13640633(+) (11)//scaffold_19:13651096-13651217(+) (11)//scaffold_2085:2594-2715(-) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr2g030170.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225221.1.S1_a_at	A	A1TA	POPTR_0252s00210	POPTR_0252s00210 (11)	scaffold_252:12263-12304(-) (11)//scaffold_252:12326-12367(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225222.1.S1_at	A	A1TS	POPTR_0001s43850	POPTR_0001s43850 (11)	scaffold_1:44219476-44219997(+) (11)	POPTR_0001s42300 (8)	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225222.1.S1_x_at	A	A2TS	POPTR_0001s43850	POPTR_0001s43850 (11)//POPTR_0001s42300 (9)	scaffold_1:42042709-42043134(+) (9)//scaffold_1:44219476-44219997(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225223.1.S1_at	A	A1TS	POPTR_0001s42220	POPTR_0001s42220 (11)	scaffold_1:41961022-41961636(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225224.1.S1_at	A	A1TS	POPTR_0001s42210	POPTR_0001s42210 (11)	scaffold_1:41947169-41947858(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225225.1.S1_at	A	A1TS	POPTR_0001s42180	POPTR_0001s42180 (11)	scaffold_1:41928979-41929868(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os04g54070.1	"receptor-like kinase, putative"	Medtr3g020890.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225226.1.S1_s_at	A	A2TS	POPTR_0001s42110	POPTR_0001s42140 (11)//POPTR_0001s42110 (11)	scaffold_1:41867184-41867819(-) (11)//scaffold_1:41897086-41898206(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020990.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225228.1.S1_s_at	A	A1TS	POPTR_0001s42100	POPTR_0001s42100 (11)	scaffold_1:41860385-41860928(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225229.1.S1_s_at	A	A1TS	POPTR_0001s42070	POPTR_0001s42070 (11)	scaffold_1:41836632-41836880(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr6g013320.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225230.1.S1_at	A	A1TS	POPTR_0001s42060	POPTR_0001s42060 (11)	scaffold_1:41828219-41828755(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020890.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225231.1.S1_at	A	A1TS	POPTR_0001s42050	POPTR_0001s42050 (11)	scaffold_1:41826274-41827091(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021290.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225232.1.S1_at	A	A1TS	POPTR_0001s42030	POPTR_0001s42030 (11)	scaffold_1:41774846-41775659(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225233.1.S1_at	A	A1TS	POPTR_0001s42020	POPTR_0001s42020 (11)	scaffold_1:41766865-41767689(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225234.1.S1_at	A	A1TS	POPTR_0001s42010	POPTR_0001s42010 (11)	scaffold_1:41761305-41762052(+) (11)	NA	O81833	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	AT4G27300.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr3g008750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225235.1.S1_at	A	A1TS	POPTR_0001s41990	POPTR_0001s41990 (11)	scaffold_1:41748859-41749230(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os04g54130.1	"TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr2g011230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.225236.1.S1_at	A	A1TS	POPTR_0001s41690	POPTR_0001s41690 (11)	scaffold_1:41395420-41396540(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os12g30760.1	"disease resistance protein, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.225237.1.S1_at	A	A1TS	POPTR_0001s41680	POPTR_0001s41680 (11)	scaffold_1:41389662-41390155(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225238.1.S1_s_at	A	A1MS	POPTR_0011s01160	POPTR_0011s01160 (11)	scaffold_11:682540-682711(+) (11)	NA	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	LOC_Os03g61660.1	"retrotransposon protein, putative, unclassified"	Medtr5g092800.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225241.1.S1_at	A	A2TS	POPTR_0006s07870	POPTR_0006s07890 (10)//POPTR_0006s07870 (10)	scaffold_6:5755868-5762045(-) (11)//scaffold_6:5769674-5771075(-) (11)	NA	P38605	Cycloartenol synthase	AT2G07050.1	cycloartenol synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr5g008860.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.225243.1.S1_s_at	A	A4TS	POPTR_0001s27560	POPTR_0002s16270 (11)//POPTR_0001s27560 (11)//POPTR_0002s15750 (11)//POPTR_0002s15780 (11)	scaffold_1:26451589-26451630(+) (11)//scaffold_2:11753246-11753287(+) (11)//scaffold_2:11766597-11766638(+) (11)//scaffold_2:12173862-12173903(+) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.225246.1.S1_at	A	A2TS	POPTR_0017s09150	POPTR_0017s09150 (10)//POPTR_0017s09070 (9)	scaffold_17:7741661-7742057(+) (9)//scaffold_17:7812979-7813587(+) (10)	POPTR_0379s00200 (8)	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os07g36590.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011310.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225247.1.S1_at	A	A1TS	POPTR_0011s16580	POPTR_0011s16580 (11)	scaffold_11:18426142-18426580(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225249.1.S1_s_at	A	A1TS	POPTR_0011s16570	POPTR_0011s16570 (11)	scaffold_11:18419268-18419815(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225250.1.S1_at	A	A1TS	POPTR_0011s16550	POPTR_0011s16550 (11)	scaffold_11:18406753-18407281(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35700.1	"reticuline oxidase-like protein precursor, putative, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225251.1.S1_at	A	A1TS	POPTR_0011s16440	POPTR_0011s16440 (11)	scaffold_11:18358107-18358642(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44360.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr3g017130.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225252.1.S1_at	A	A1TS	POPTR_0011s16410	POPTR_0011s16410 (11)	scaffold_11:18349117-18349418(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225255.1.S1_at	A	A4TS	POPTR_0001s31550	POPTR_0001s31570 (11)//POPTR_0001s31580 (11)//POPTR_0001s31550 (11)//POPTR_0092s00200 (11)	scaffold_1:29887883-29888319(-) (11)//scaffold_1:29905735-29906171(-) (11)//scaffold_1:29927007-29927442(-) (11)//scaffold_92:11118-11553(-) (11)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25810.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.225257.1.S1_at	A	A1TS	POPTR_0013s13660	POPTR_0013s13660 (10)	scaffold_13:14079525-14080116(-) (10)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g33950.1	conserved hypothetical protein	Medtr5g025900.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225258.1.S1_at	A	A1TS	POPTR_0013s13450	POPTR_0013s13450 (11)	scaffold_13:13926574-13926815(-) (11)	NA	A2WW87	Transcription factor GAMYB	AT4G26930.1	myb domain protein 97 	LOC_Os01g59660.4	"MYB family transcription factor, putative, expressed"	Medtr3g068970.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225259.1.S1_s_at	A	A1TS	POPTR_0013s12980	POPTR_0013s12980 (11)	scaffold_13:13572211-13572445(-) (11)	NA	P25803	Vignain	AT5G45890.1	senescence-associated gene 12 	LOC_Os04g13090.1	"vignain precursor, putative"	Medtr3g059060.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.225260.1.S1_at	A	A1TS	POPTR_0013s12880	POPTR_0013s12880 (11)	scaffold_13:13505677-13506280(-) (11)	NA	P27054	Endochitinase PR4	AT3G54420.1	homolog of carrot EP3-3 chitinase 	LOC_Os04g41680.1	"CHIT3 - Chitinase family protein precursor, expressed"	Medtr2g120640.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.225262.1.S1_s_at	A	A1TS	POPTR_0019s02150	POPTR_0019s02150 (11)	scaffold_19:1984336-1984633(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.225263.1.S1_at	A	A6TS	POPTR_0010s04730	POPTR_0012s04640 (11)//POPTR_0010s04730 (11)//POPTR_0018s06950 (11)//POPTR_0011s10485 (10)//POPTR_0001s21095 (10)//POPTR_0015s05465 (10)	scaffold_1:19442320-19443227(+) (10)//scaffold_10:5862703-5863609(-) (11)//scaffold_11:12939362-12940268(-) (10)//scaffold_12:3978939-3979845(-) (11)//scaffold_15:5813067-5813973(+) (10)//scaffold_18:7062557-7063464(+) (11)	NA	NA	NA	AT4G15020.2	hAT transposon superfamily 	LOC_Os09g32380.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	GO:0003677|DNA binding	NA
PtpAffx.225264.1.S1_at	A	A1TS	POPTR_0018s06850	POPTR_0018s06850 (11)	scaffold_18:6906364-6906637(-) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT5G56890.1	Protein kinase superfamily protein 	LOC_Os01g51290.1	"protein kinase family protein, putative, expressed"	Medtr2g045880.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225268.1.S1_at	A	A1TS	POPTR_0001s40570	POPTR_0001s40570 (11)	scaffold_1:40053489-40053617(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225268.1.S1_s_at	A	A4TS	POPTR_0001s40570	POPTR_0001s40600 (11)//POPTR_0001s40570 (11)//POPTR_0001s40620 (11)//POPTR_0001s40590 (9)	scaffold_1:40053021-40053479(+) (11)//scaffold_1:40138969-40139385(+) (9)//scaffold_1:40145230-40145688(-) (11)//scaffold_1:40187508-40187966(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225270.1.S1_at	A	A1TS	POPTR_0011s06570	POPTR_0011s06570 (11)	scaffold_11:7067689-7067845(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G29720.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr4g136230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225271.1.S1_at	A	A1TS	POPTR_0013s12980	POPTR_0013s12980 (11)	scaffold_13:13572544-13572669(-) (11)	NA	P25803	Vignain	AT5G45890.1	senescence-associated gene 12 	LOC_Os04g13090.1	"vignain precursor, putative"	Medtr3g059060.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.225272.1.S1_x_at	A	A1TS	POPTR_0006s28660	POPTR_0006s28660 (11)	scaffold_6:26285401-26285895(-) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225273.1.S1_at	A	A1TS	POPTR_0006s28780	POPTR_0006s28780 (11)	scaffold_6:26368748-26369361(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g05960.1	"receptor kinase, putative, expressed"	Medtr5g026140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225277.1.S1_at	A	A1TS	POPTR_0006s29150	POPTR_0006s29150 (11)	scaffold_6:26605138-26605590(-) (11)	NA	P73627	Uncharacterized protein sll1770	AT5G24810.1	ABC1 family protein 	LOC_Os06g48770.1	"OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed"	Medtr1g010020.1	"ABC-1; Penicillin-binding protein, transpeptidase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225278.1.S1_at	A	A1TS	POPTR_0006s29210	POPTR_0006s29210 (11)	scaffold_6:26649114-26650424(-) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.225279.1.S1_at	A	A1TS	POPTR_0006s29260	POPTR_0006s29260 (11)	scaffold_6:26685586-26686008(-) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.2	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225280.1.S1_at	A	A1TS	POPTR_0001s23530	POPTR_0001s23530 (11)	scaffold_1:22926160-22926723(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g39930.1	"receptor-like protein kinase, putative"	Medtr5g013190.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225281.1.S1_at	A	A1TS	POPTR_0001s23540	POPTR_0001s23540 (11)	scaffold_1:22947025-22947541(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12560.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011780.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225283.1.S1_s_at	A	A1TS	POPTR_0019s08780	POPTR_0019s08780 (11)	scaffold_19:10338915-10339013(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225284.1.S1_at	A	A1TS	POPTR_1939s00200	POPTR_1939s00200 (11)	scaffold_1939:2948-3177(+) (11)	NA	Q9C9D0	Sulfotransferase 16	AT5G07010.1	sulfotransferase 2A 	LOC_Os04g44460.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.225284.1.S1_s_at	A	A2TS	POPTR_0022s00420	POPTR_1939s00200 (11)//POPTR_0022s00420 (11)	scaffold_1939:2597-3138(+) (11)//scaffold_22:140926-141467(+) (11)	NA	Q9C9D0	Sulfotransferase 16	AT5G07010.1	sulfotransferase 2A 	LOC_Os04g44460.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.225285.1.S1_at	A	A1TS	POPTR_0022s00420	POPTR_0022s00420 (11)	scaffold_22:141193-141494(+) (11)	NA	Q9C9D0	Sulfotransferase 16	AT5G07010.1	sulfotransferase 2A 	LOC_Os04g44460.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.225286.1.S1_x_at	A	A1TS	POPTR_0005s14340	POPTR_0005s14340 (9)	scaffold_5:11403589-11403846(-) (9)	POPTR_0017s03120 (7)	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31550.1	"disease resistance protein RGA4, putative"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225288.1.S1_s_at	A	A2TS	POPTR_0223s00210	POPTR_0223s00210 (11)//POPTR_0223s00200 (10)	scaffold_223:1615-2116(-) (10)//scaffold_223:18834-19351(-) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT2G25470.1	receptor like protein 21 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225289.1.S1_at	A	A1TS	POPTR_0006s06000	POPTR_0006s06000 (11)	scaffold_6:4271034-4271583(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225292.1.S1_x_at	A	A1TS	POPTR_0011s08633	POPTR_0011s08633 (11)	scaffold_11:10504233-10504795(-) (11)	POPTR_0001s19960 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225295.1.S1_at	A	A1TS	POPTR_0006s28900	POPTR_0006s28900 (10)	scaffold_6:26438007-26438436(-) (10)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225295.1.S1_x_at	A	A1TS	POPTR_0006s28900	POPTR_0006s28900 (10)	scaffold_6:26437973-26438436(-) (10)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225296.1.S1_s_at	A	A1TS	POPTR_0004s07300	POPTR_0004s07300 (11)	scaffold_4:6030659-6030975(+) (11)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G62930.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225297.1.S1_x_at	A	A1TS	POPTR_0004s07290	POPTR_0004s07290 (11)	scaffold_4:6019205-6019477(+) (11)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G62930.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225298.1.S1_at	A	A1TS	POPTR_0818s00195	POPTR_0818s00195 (11)	scaffold_818:2331-3188(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT1G34190.1	NAC domain containing protein 17 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr5g084760.1	No apical meristem (NAM) protein 	GO:0007165|signal transduction||GO:0045449|regulation of transcription||GO:0023052|signaling||GO:0045087|innate immune response||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission	GO:0003677|DNA binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.225300.1.S1_at	A	A2TS	POPTR_2153s00200	POPTR_2153s00200 (11)//POPTR_0043s00270 (9)	scaffold_2153:3028-3432(-) (11)//scaffold_43:112255-112656(+) (9)	NA	NA	NA	AT1G65850.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr3g110750.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.225300.1.S1_x_at	A	A1TS	POPTR_2153s00200	POPTR_2153s00200 (10)	scaffold_2153:3028-3591(-) (11)	POPTR_0043s00270 (8)	NA	NA	AT1G65850.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr3g110750.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.225302.1.S1_s_at	A	A1TS	POPTR_0015s05870	POPTR_0015s05870 (11)	scaffold_15:6196142-6196182(-) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os01g41750.1	expressed protein	Medtr5g093230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225303.1.S1_at	A	A1TS	POPTR_2406s00200	POPTR_2406s00200 (9)	scaffold_2406:2263-2387(-) (9)	POPTR_0098s00220 (8)//POPTR_0098s00300 (7)//POPTR_0098s00310 (6)//POPTR_0016s02180 (6)//POPTR_0098s00290 (6)	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225304.1.S1_at	A	A1TS	POPTR_0001s16440	POPTR_0001s16440 (11)	scaffold_1:13235207-13235286(+) (11)	NA	P53569	CCAAT/enhancer-binding protein zeta	AT1G72440.1	CCAAT-binding factor 	LOC_Os09g02810.1	"CCAAT/enhancer-binding protein, putative, expressed"	Medtr8g138880.1	CBF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225305.1.S1_s_at	A	A1TS	POPTR_0001s16390	POPTR_0001s16390 (11)	scaffold_1:13171721-13172161(+) (11)	NA	O65351	Subtilisin-like protease	AT3G14240.1	Subtilase family protein 	LOC_Os08g35090.1	"OsSub56 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.225307.1.S1_at	A	A1TS	POPTR_0016s11396	POPTR_0016s11396 (9)	scaffold_16:10227927-10228461(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225308.1.S1_at	A	A1TS	POPTR_0016s11380	POPTR_0016s11380 (9)	scaffold_143:7677-8149(+) (9)//scaffold_16:10191938-10192411(+) (11)//scaffold_19:2090674-2091147(-) (9)//scaffold_9:7609400-7609874(-) (9)	POPTR_0009s08260 (8)//POPTR_0006s13090 (7)//POPTR_0018s04740 (7)//POPTR_0005s17475 (7)//POPTR_0004s11480 (7)	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os11g39940.1	"transposon protein, putative, unclassified"	Medtr3g064360.1	"Tam3-like transposon protein; 93317-95488, related "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.225308.1.S1_x_at	A	A1MS	POPTR_0016s11380	POPTR_0016s11380 (9)	scaffold_16:10191938-10192504(+) (11)	POPTR_0006s13090 (6)//POPTR_0004s15890 (6)//POPTR_0009s08260 (6)//POPTR_0018s04740 (6)//POPTR_0004s11480 (6)	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os11g39940.1	"transposon protein, putative, unclassified"	Medtr3g064360.1	"Tam3-like transposon protein; 93317-95488, related "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.225309.1.S1_at	A	A1TS	POPTR_0007s02570	POPTR_0007s02570 (11)	scaffold_7:1512513-1512682(+) (11)	NA	Q9LXG3	Peroxidase 56	AT5G15180.1	Peroxidase superfamily protein 	LOC_Os11g43980.1	"peroxidase precursor, putative, expressed"	AC235488_1.1	"Haem peroxidase, plant/fungal/bacterial AC235488.1 90-1843 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.225309.1.S1_s_at	A	A2TS	POPTR_0007s02570	POPTR_1693s00200 (11)//POPTR_0007s02570 (11)	scaffold_1693:1739-1922(+) (11)//scaffold_7:1508291-1511935(+) (11)	NA	Q9LXG3	Peroxidase 56	AT5G15180.1	Peroxidase superfamily protein 	LOC_Os11g43980.1	"peroxidase precursor, putative, expressed"	AC235488_1.1	"Haem peroxidase, plant/fungal/bacterial AC235488.1 90-1843 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.22531.1.A1_at	A	A1TS	POPTR_0014s10030	POPTR_0014s10030 (11)	scaffold_14:7507134-7508481(-) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT4G00830.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os10g06130.2	"RNA recognition motif containing protein, expressed"	Medtr7g145980.1	"Calcium-binding EF-hand; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.225311.1.S1_x_at	A	A1TS	POPTR_0011s06615	POPTR_0011s06615 (9)	scaffold_11:7184289-7184693(+) (10)//scaffold_12:8684968-8685371(-) (11)//scaffold_4:13644612-13645016(+) (11)//scaffold_6:24017838-24018242(+) (11)//scaffold_849:47-81(+) (9)	POPTR_0001s42600 (7)	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os01g08610.1	"hAT dimerisation domain-containing protein, putative"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.225312.1.S1_s_at	A	A1MS	POPTR_0030s00570	POPTR_0030s00570 (11)	scaffold_30:303511-303828(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225313.1.S1_s_at	A	A10TS	POPTR_0004s10890	POPTR_0004s10890 (11)//POPTR_0004s19040 (11)//POPTR_0004s18930 (11)//POPTR_0004s10930 (11)//POPTR_0004s19030 (11)//POPTR_0004s18980 (11)//POPTR_0004s19070 (11)//POPTR_0004s10940 (11)//POPTR_0217s00200 (11)//POPTR_0004s10950 (11)	scaffold_217:28-5778(-) (11)//scaffold_383:10758-10971(-) (11)//scaffold_4:9459039-9459252(-) (11)//scaffold_4:9500700-9507792(-) (11)//scaffold_4:9507579-9510163(-) (11)//scaffold_4:9509950-9512531(-) (11)//scaffold_4:9999402-9999613(-) (9)//scaffold_4:10010419-10010630(-) (9)//scaffold_4:10012896-10013107(-) (9)//scaffold_4:10015373-10015584(-) (9)//scaffold_4:18693734-18693947(-) (11)//scaffold_4:18731319-18735013(-) (11)//scaffold_4:18828158-18828371(-) (11)//scaffold_4:18832538-18832751(-) (11)//scaffold_4:18894827-18895040(-) (11)//scaffold_4:18899683-18899896(-) (11)//scaffold_4:18972862-18973075(-) (11)	POPTR_0383s00200 (7)//POPTR_0004s18950 (7)//POPTR_0004s11380 (6)//POPTR_0004s11390 (6)//POPTR_0004s11400 (6)//POPTR_0004s10960 (6)//POPTR_0004s11410 (6)	NA	NA	AT5G34885.1	Protein of unknown function (DUF784) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225313.1.S1_x_at	A	A1TS	POPTR_0004s19030	POPTR_0004s19030 (11)	scaffold_4:18693618-18693989(-) (9)//scaffold_4:18731203-18735009(-) (9)//scaffold_4:18894711-18895082(-) (11)//scaffold_4:18899567-18903297(-) (10)	POPTR_0004s10890 (8)//POPTR_0004s18950 (7)//POPTR_0004s19040 (7)//POPTR_0004s18930 (7)//POPTR_0383s00200 (6)//POPTR_0383s00210 (6)//POPTR_0217s00200 (6)	NA	NA	AT5G42957.1	Protein of unknown function (DUF784) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225314.1.S1_s_at	A	A3TS	POPTR_0001s29000	POPTR_0001s29080 (11)//POPTR_0001s29090 (11)//POPTR_0001s29000 (11)	scaffold_1:27759242-27759463(-) (11)//scaffold_1:27834365-27834586(-) (11)//scaffold_1:27876450-27876671(-) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225315.1.S1_s_at	A	A3TS	POPTR_0014s05530	POPTR_0646s00220 (11)//POPTR_0014s05530 (11)//POPTR_0646s00200 (11)	scaffold_14:4146538-4146732(-) (11)//scaffold_646:1542-1736(+) (11)//scaffold_646:11671-11865(+) (11)	POPTR_0012s11510 (6)	Q8LEF3	Transcription elongation factor 1 homolog	AT5G46030.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g04160.1	"transcription elongation factor 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225316.1.S1_at	A	A1TS	POPTR_0004s22490	POPTR_0004s22490 (11)	scaffold_4:21373322-21373403(-) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G57620.1	myb domain protein 36 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225317.1.S1_at	A	A1TS	POPTR_0018s14610	POPTR_0018s14610 (11)	scaffold_18:14751656-14752545(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225318.1.S1_s_at	A	A1TS	POPTR_0011s13010	POPTR_0011s13010 (11)	scaffold_11:15715391-15715671(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os12g15550.1	"S-locus-specific glycoprotein S13 precursor, putative, expressed"	Medtr5g076210.1	"EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	NA	GO:0005529|sugar binding	NA
PtpAffx.225319.1.S1_at	A	A1MS	POPTR_0019s09870	POPTR_0019s09870 (9)	scaffold_19:11486976-11487022(+) (9)	POPTR_0019s09780 (8)	Q9FH83	Probable WRKY transcription factor 52	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225320.1.S1_at	A	A1TS	POPTR_0004s11010	POPTR_0004s11010 (11)	scaffold_4:9616275-9616865(+) (11)	NA	Q9FWA6	Pentatricopeptide repeat-containing protein At3g02330	AT3G02330.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g40920.1	"pentatricopeptide, putative, expressed"	Medtr7g015730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225321.1.S1_at	A	A1TS	POPTR_0062s00200	POPTR_0062s00200 (11)	scaffold_62:12583-13328(-) (11)	NA	NA	NA	AT4G14390.1	Ankyrin repeat family protein 	NA	NA	Medtr2g021630.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225323.1.S1_at	A	A3TS	POPTR_0004s00970	POPTR_0004s01020 (11)//POPTR_0004s00970 (11)//POPTR_0004s01000 (11)	scaffold_4:464305-469420(+) (11)//scaffold_4:487744-488284(+) (11)//scaffold_4:506432-506972(+) (11)	NA	O65451	Probable F-box protein At4g22030	AT4G22030.1	F-box family protein with a domain of unknown function (DUF295) 	LOC_Os02g13220.1	"F-box family protein, putative, expressed"	Medtr8g147080.1	F-box family protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225324.1.S1_at	A	A1MS	POPTR_0004s00620	POPTR_0004s00620 (9)	scaffold_4:237909-238036(+) (9)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G22150.1	plant UBX domain-containing protein 3 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225327.1.S1_at	A	A6TS	POPTR_0017s03670	POPTR_0017s03770 (11)//POPTR_0017s03850 (11)//POPTR_0017s03880 (11)//POPTR_0017s03670 (11)//POPTR_0017s00210 (10)//POPTR_0017s03740 (9)	scaffold_17:12228-12842(-) (10)//scaffold_17:2725184-2725845(+) (11)//scaffold_17:2784530-2785198(+) (9)//scaffold_17:2795788-2796466(+) (11)//scaffold_17:2863628-2864340(+) (11)//scaffold_17:2895874-2896541(+) (11)	NA	P48979	Polygalacturonase	AT3G59850.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr4g114910.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.225329.1.S1_at	A	A1MS	POPTR_0011s10500	POPTR_0011s10500 (9)	scaffold_11:12994262-12994722(-) (9)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g14940.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.225330.1.S1_at	A	A1TS	POPTR_0011s10410	POPTR_0011s10410 (11)	scaffold_11:12853841-12854561(-) (11)	POPTR_0141s00200 (6)	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12450.1	"receptor-like protein kinase 2 precursor, putative"	Medtr5g026140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225332.1.S1_x_at	A	A1TS	POPTR_0008s21640	POPTR_0008s21640 (11)	scaffold_8:15779048-15779422(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225333.1.S1_at	A	A1TS	POPTR_0008s21650	POPTR_0008s21650 (11)	scaffold_8:15805678-15805777(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225334.1.S1_at	A	A1TS	POPTR_0017s03920	POPTR_0017s03920 (11)	scaffold_17:2940887-2941653(+) (11)	NA	P48979	Polygalacturonase	AT2G43870.1	Pectin lyase-like superfamily protein 	LOC_Os11g14410.1	"polygalacturonase, putative, expressed"	Medtr4g114910.1	"Glycoside hydrolase, family 28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225335.1.S1_at	A	A1TS	POPTR_0017s03930	POPTR_0017s03930 (11)	scaffold_17:2943446-2944131(+) (11)	NA	P48979	Polygalacturonase	AT1G05660.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr2g056320.1	"Regulator of chromosome condensation, RCC1; Parallel beta-helix repeat "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.225336.1.S1_at	A	A1TS	POPTR_0017s03940	POPTR_0017s03940 (11)	scaffold_17:2955548-2956371(+) (11)	NA	P48979	Polygalacturonase	AT2G43890.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr2g056320.1	"Regulator of chromosome condensation, RCC1; Parallel beta-helix repeat "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.225336.1.S1_s_at	A	A2TS	POPTR_0017s03940	POPTR_0017s03940 (11)//POPTR_0017s03950 (11)	scaffold_17:2955460-2956409(+) (11)//scaffold_17:2976897-2977842(+) (11)	NA	P48979	Polygalacturonase	AT2G43890.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr2g056320.1	"Regulator of chromosome condensation, RCC1; Parallel beta-helix repeat "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.225336.1.S1_x_at	A	A1TS	POPTR_0017s03940	POPTR_0017s03940 (11)	scaffold_17:2955464-2956371(+) (11)	NA	P48979	Polygalacturonase	AT2G43890.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr2g056320.1	"Regulator of chromosome condensation, RCC1; Parallel beta-helix repeat "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.225337.1.S1_x_at	A	A1TS	POPTR_0017s03950	POPTR_0017s03950 (11)	scaffold_17:2976900-2977855(+) (11)	NA	P48979	Polygalacturonase	AT2G43890.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr2g056320.1	"Regulator of chromosome condensation, RCC1; Parallel beta-helix repeat "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.225340.1.S1_at	A	A1TS	POPTR_0019s01080	POPTR_0019s01080 (11)	scaffold_19:821649-821852(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225342.1.S1_s_at	A	A2TS	POPTR_0003s18750	POPTR_0003s18810 (11)//POPTR_0003s18750 (11)	scaffold_3:17709727-17709820(+) (11)//scaffold_3:17741380-17741473(+) (11)	NA	Q9C9D0	Sulfotransferase 16	AT5G07010.1	sulfotransferase 2A 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.225342.1.S1_x_at	A	A1TS	POPTR_0003s18750	POPTR_0003s18750 (11)	scaffold_3:17709728-17709937(+) (11)	NA	Q9C9D0	Sulfotransferase 16	AT5G07010.1	sulfotransferase 2A 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.225343.1.S1_at	A	A1TS	POPTR_0017s10160	POPTR_0017s10160 (11)	scaffold_17:9403167-9403715(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225344.1.S1_at	A	A1TS	POPTR_0017s10130	POPTR_0017s10130 (11)	scaffold_17:9371193-9371711(+) (11)	NA	Q9SU64	Probable cyclic nucleotide-gated ion channel 16	AT3G48010.1	cyclic nucleotide-gated channel 16 	LOC_Os12g06570.1	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.225346.1.S1_at	A	A1TS	POPTR_0009s00200	POPTR_0009s00200 (11)	scaffold_9:59084-60411(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225351.1.S1_at	A	A1TS	POPTR_0001s39480	POPTR_0001s39480 (11)	scaffold_1:38672370-38673126(-) (11)	NA	C0LGE4	Probable LRR receptor-like serine/threonine-protein kinase At1g12460	AT1G47890.1	receptor like protein 7 	LOC_Os01g33090.1	expressed protein	Medtr2g034580.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.225356.1.S1_s_at	A	A1TS	POPTR_0005s10810	POPTR_0005s10810 (11)	scaffold_5:7749835-7751006(-) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr8g088950.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.225358.1.S1_at	A	A1TS	POPTR_0001s40150	POPTR_0001s40150 (11)	scaffold_1:39480152-39481140(+) (11)	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G16905.1	Curculin-like (mannose-binding) lectin family protein 	NA	NA	Medtr2g092250.1	Curculin-like (mannose-binding) lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225360.1.S1_at	A	A1TS	POPTR_0017s00770	POPTR_0017s00770 (11)	scaffold_17:555389-555486(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12450.1	"receptor-like protein kinase 2 precursor, putative"	Medtr5g025900.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225360.1.S1_s_at	A	A3TS	POPTR_0017s00760	POPTR_0017s00760 (11)//POPTR_0017s03350 (11)//POPTR_0017s00770 (11)	scaffold_17:545291-545787(-) (11)//scaffold_17:555375-555871(-) (11)//scaffold_17:2463212-2463708(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12450.1	"receptor-like protein kinase 2 precursor, putative"	Medtr5g026330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225361.1.S1_at	A	A1TS	POPTR_0017s03350	POPTR_0017s03350 (11)	scaffold_17:2463665-2463880(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g29790.1	"receptor kinase, putative"	Medtr5g026330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225362.1.S1_at	A	A1TS	POPTR_0002s21040	POPTR_0002s21040 (11)	scaffold_2:17372048-17372083(+) (11)	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124460.1	"EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.225363.1.S1_at	A	A1TS	POPTR_0011s05750	POPTR_0011s05750 (9)	scaffold_11:5741765-5742716(-) (11)	POPTR_0004s04910 (6)	P32456	Interferon-induced guanylate-binding protein 2	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	GO:0006955|immune response	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.225364.1.S1_at	A	A1TS	POPTR_0011s08310	POPTR_0011s08310 (11)	scaffold_11:9575366-9575461(+) (11)//scaffold_16:7844863-7844916(+) (9)//scaffold_4:5625258-5625311(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225367.1.S1_at	A	A1TS	POPTR_0025s00200	POPTR_0025s00200 (11)	scaffold_25:4065-4243(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT1G74170.1	receptor like protein 13 	LOC_Os04g48760.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.22537.1.A1_at	A	A1TS	POPTR_0006s01100	POPTR_0006s01100 (10)	scaffold_6:621424-621956(+) (10)	NA	Q0DCM5	"Mannan endo-1,4-beta-mannosidase 6"	AT4G28320.1	Glycosyl hydrolase superfamily protein 	LOC_Os06g20620.1	"OsMan07 - Endo-Beta-Mannanase, expressed"	Medtr4g107960.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225371.1.S1_at	A	A1TS	POPTR_0018s03870	POPTR_0018s03870 (11)	scaffold_18:3301474-3302065(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.225371.1.S1_s_at	A	A2TS	POPTR_0018s03870	POPTR_0018s03870 (11)//POPTR_0018s04360 (9)	scaffold_18:3300834-3302116(+) (11)//scaffold_18:3673429-3674314(+) (9)	POPTR_0018s03880 (8)	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.225372.1.S1_at	A	A1TS	POPTR_0018s03880	POPTR_0018s03880 (11)	scaffold_18:3314710-3315267(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.225375.1.S1_at	A	A2TS	POPTR_0007s04520	POPTR_0007s04520 (11)//POPTR_0007s04510 (9)	scaffold_7:2802131-2811903(+) (11)//scaffold_7:2811750-2812328(+) (9)	NA	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.225380.1.S1_at	A	A1TS	POPTR_0016s01380	POPTR_0016s01380 (11)	scaffold_16:617809-618104(+) (11)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225380.1.S1_s_at	A	A1TS	POPTR_0016s01380	POPTR_0016s01380 (11)	scaffold_16:617821-618062(+) (11)	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225381.1.S1_x_at	A	A2TS	POPTR_0011s03870	POPTR_1224s00200 (11)//POPTR_0011s03870 (11)	scaffold_11:3956623-3957041(-) (11)//scaffold_1224:2970-3388(-) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011330.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225384.1.S1_at	A	A1TS	POPTR_0012s11760	POPTR_0012s11760 (11)	scaffold_12:12092793-12094108(-) (11)	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os11g37260.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225388.1.S1_at	A	A1TS	POPTR_0001s05910	POPTR_0001s05910 (9)	scaffold_1:4629796-4629974(-) (9)//scaffold_1:29750934-29751112(+) (9)//scaffold_19:1211733-1211911(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225391.1.S1_s_at	A	A3TS	POPTR_0019s02480	POPTR_0319s00210 (11)//POPTR_0019s02510 (11)//POPTR_0019s02480 (11)	scaffold_19:2264763-2265313(-) (11)//scaffold_19:2280053-2280603(-) (11)//scaffold_319:4723-5328(-) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os08g13870.1	"S-locus lectin protein kinase family protein, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225392.1.S1_at	A	A1TS	POPTR_0001s43200	POPTR_0001s43200 (10)	scaffold_1:43269920-43270455(+) (10)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225394.1.S1_at	A	A1TS	POPTR_0001s43160	POPTR_0001s43160 (11)	scaffold_1:43214781-43214876(+) (11)	POPTR_0080s00240 (8)	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225395.1.S1_s_at	A	A10TS	POPTR_0001s42890	POPTR_0001s42890 (11)//POPTR_0001s43240 (11)//POPTR_0001s43160 (11)//POPTR_0001s43170 (11)//POPTR_0080s00200 (11)//POPTR_0080s00240 (11)//POPTR_0001s43180 (11)//POPTR_0001s43270 (11)//POPTR_0080s00220 (11)//POPTR_0001s43260 (11)	scaffold_1:42992464-42992521(+) (11)//scaffold_1:43216869-43216926(+) (11)//scaffold_1:43227825-43227882(+) (11)//scaffold_1:43251072-43251129(+) (11)//scaffold_1:43283627-43283684(+) (11)//scaffold_1:43312375-43312432(+) (11)//scaffold_1:43326236-43326293(+) (11)//scaffold_80:4991-5048(-) (11)//scaffold_80:13419-13476(-) (11)//scaffold_80:67808-67865(-) (11)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225396.1.S1_at	A	A1TS	POPTR_0001s43120	POPTR_0001s43120 (11)	scaffold_1:43187273-43187677(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225397.1.S1_x_at	A	A1TS	POPTR_0001s43180	POPTR_0001s43180 (11)	scaffold_1:43250413-43250870(+) (11)	POPTR_0001s42890 (7)//POPTR_0001s43270 (7)//POPTR_0001s43260 (7)	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225399.1.S1_x_at	A	A2TS	POPTR_0001s43160	POPTR_0001s43160 (10)//POPTR_0080s00240 (9)	scaffold_1:43210626-43216816(+) (11)//scaffold_80:67918-68492(-) (9)	POPTR_0001s43240 (8)	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225405.1.S1_at	A	A1TS	POPTR_0001s03550	POPTR_0001s03550 (11)	scaffold_1:2846307-2846893(+) (11)	NA	Q9FXH6	Putative cyclic nucleotide-gated ion channel 8	AT1G19780.1	cyclic nucleotide gated channel  8 	LOC_Os04g55080.1	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr4g021850.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.225407.1.S1_at	A	A1TS	POPTR_0004s02510	POPTR_0004s02510 (11)	scaffold_4:1654688-1654876(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35300.1	"TKL_IRAK_DUF26-lc.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225407.1.S1_s_at	A	A2TS	POPTR_0004s02500	POPTR_0004s02510 (11)//POPTR_0004s02500 (11)	scaffold_4:1649375-1649658(+) (11)//scaffold_4:1654418-1654701(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35580.1	"TKL_IRAK_DUF26-lc.20 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225410.1.S1_s_at	A	A1TS	POPTR_0822s00200	POPTR_0822s00200 (11)	scaffold_822:1046-1341(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g35254.1	"transposon protein, putative, CACTA, En/Spm sub-class"	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225412.1.S1_at	A	A1TS	POPTR_0035s00341	POPTR_0035s00341 (11)	scaffold_35:199376-199963(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os05g23250.1	"Leucine Rich Repeat family protein, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225412.1.S1_x_at	A	A1TS	POPTR_0035s00341	POPTR_0035s00341 (11)	scaffold_35:199376-199962(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os05g23250.1	"Leucine Rich Repeat family protein, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225414.1.S1_at	A	A1TS	POPTR_0035s00400	POPTR_0035s00400 (11)	scaffold_35:230194-230967(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225415.1.S1_x_at	A	A1TS	POPTR_0017s14620	POPTR_0017s14620 (11)	scaffold_17:14641815-14642230(-) (11)	NA	Q40392	TMV resistance protein N	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225420.1.S1_x_at	A	A1TS	POPTR_0011s06150	POPTR_0011s06150 (11)	scaffold_11:6230847-6231996(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G29730.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225421.1.S1_at	A	A1TS	POPTR_0001s42370	POPTR_0001s42370 (11)	scaffold_1:42157401-42157728(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g076270.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.225421.1.S1_x_at	A	A1TS	POPTR_0001s42370	POPTR_0001s42370 (11)	scaffold_1:42157401-42157769(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g076270.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.225424.1.S1_s_at	A	A2TS	POPTR_0452s00210	POPTR_0452s00210 (11)//POPTR_0460s00210 (11)	scaffold_452:8941-9191(+) (11)//scaffold_460:15033-15283(+) (11)	NA	Q9LU24	Putative F-box protein At3g16210	AT3G16210.1	F-box family protein 	LOC_Os09g30180.2	"OsFBX331 - F-box domain containing protein, expressed"	Medtr5g050030.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225425.1.S1_s_at	A	A2TS	POPTR_0004s20610	POPTR_0004s20610 (11)//POPTR_0004s20590 (10)	scaffold_4:20069170-20069736(-) (10)//scaffold_4:20080739-20081305(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225427.1.S1_x_at	A	A1TS	POPTR_0015s15100	POPTR_0015s15100 (10)	scaffold_15:14470621-14470826(+) (10)	POPTR_0113s00240 (8)	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225428.1.S1_s_at	A	A1TS	POPTR_0015s15110	POPTR_0015s15110 (11)	scaffold_15:14483333-14483660(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os01g33110.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g009400.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.22543.1.S1_at	A	A2TS	POPTR_0012s12220	POPTR_0012s15190 (11)//POPTR_0012s12220 (11)	scaffold_12:12457458-12459158(-) (11)//scaffold_12:14833854-14835555(+) (11)	POPTR_0015s15420 (7)	Q71N54	Lecithine-cholesterol acyltransferase-like 4	AT4G19860.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os04g52500.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr4g114600.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225430.1.S1_at	A	A1TS	POPTR_0015s15150	POPTR_0015s15150 (11)	scaffold_15:14514706-14514740(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	NA	GO:0005515|protein binding	NA
PtpAffx.225430.1.S1_s_at	A	A5TS	POPTR_0015s15050	POPTR_0015s15150 (11)//POPTR_0015s15050 (11)//POPTR_0015s15100 (11)//POPTR_0015s15210 (11)//POPTR_0113s00240 (9)	scaffold_113:26737-27297(+) (9)//scaffold_15:14416798-14417358(+) (11)//scaffold_15:14469998-14470558(+) (11)//scaffold_15:14514637-14515197(+) (11)//scaffold_15:14556688-14557248(+) (11)	POPTR_0006s27780 (8)	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225432.1.S1_x_at	A	A1TS	POPTR_0008s22040	POPTR_0008s22040 (11)	scaffold_8:16376311-16376650(+) (11)	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.225433.1.S1_at	A	A1TS	POPTR_0008s21950	POPTR_0008s21950 (11)	scaffold_8:16310336-16310917(+) (11)	NA	O48923	Cytochrome P450 71D10	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr3g073880.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225435.1.S1_x_at	A	A1MS	POPTR_0016s11393	POPTR_0016s11393 (10)	scaffold_1:17519166-17519361(-) (9)//scaffold_1:17521451-17521646(-) (9)//scaffold_1:17523751-17523946(-) (9)//scaffold_10:4438458-4438653(-) (11)//scaffold_10:4468121-4468316(+) (9)//scaffold_10:4725714-4725891(-) (9)//scaffold_10:4747127-4747322(-) (10)//scaffold_10:4889154-4889349(-) (10)//scaffold_12:6359864-6360059(+) (11)//scaffold_12:6559680-6559875(+) (11)//scaffold_12:13021992-13022187(+) (11)//scaffold_127:50132-50327(+) (11)//scaffold_13:11530932-11531127(-) (11)//scaffold_14:15251889-15252084(-) (10)//scaffold_15:2015798-2015993(+) (10)//scaffold_15:2094442-2094637(+) (10)//scaffold_15:2141148-2141343(+) (11)//scaffold_15:2183989-2184184(-) (11)//scaffold_15:2196910-2197105(+) (11)//scaffold_15:2242886-2243051(+) (9)//scaffold_15:2301420-2301615(+) (11)//scaffold_15:2305045-2305240(+) (11)//scaffold_16:10040421-10040616(+) (11)//scaffold_16:10076685-10076880(-) (11)//scaffold_16:10220698-10220893(-) (10)//scaffold_16:10306276-10306471(-) (10)//scaffold_17:9393263-9393458(-) (10)//scaffold_17:9470559-9470755(+) (9)//scaffold_18:8394961-8395156(-) (11)//scaffold_19:7945080-7945275(+) (11)//scaffold_19:7971289-7971484(-) (10)//scaffold_19:8110585-8110780(-) (11)//scaffold_20:490634-490829(-) (11)//scaffold_23:411449-411644(+) (9)//scaffold_24:360344-370400(-) (10)//scaffold_24:438669-438846(-) (9)//scaffold_26:20830-21025(-) (9)//scaffold_26:382508-382703(-) (9)//scaffold_28:179436-179631(+) (11)//scaffold_28:236713-236908(+) (9)//scaffold_37:80797-80992(-) (11)//scaffold_4:12364210-12364405(+) (9)//scaffold_4:12585724-12585919(+) (11)//scaffold_41:3859-4054(+) (11)//scaffold_41:13930-14125(+) (11)//scaffold_41:74138-74333(+) (11)//scaffold_41:92169-92364(+) (11)//scaffold_41:111707-111902(-) (11)//scaffold_447:6680-6875(+) (9)//scaffold_5:10084962-10093749(+) (11)//scaffold_5:10226535-10226730(-) (11)//scaffold_5:25658470-25658647(+) (9)//scaffold_54:1712-1907(-) (11)//scaffold_55:64734-64929(-) (11)//scaffold_6:14833086-14833281(+) (9)//scaffold_6:14853073-14853268(-) (9)//scaffold_6:14885105-14885300(-) (11)//scaffold_6:15208916-15209111(+) (9)//scaffold_7:8081707-8081902(+) (10)//scaffold_72:45679-45874(+) (11)//scaffold_8:15755281-15755476(+) (10)//scaffold_8:16099921-16100098(-) (9)//scaffold_9:403791-403986(-) (10)//scaffold_9:477770-477947(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225436.1.S1_s_at	A	A4TS	POPTR_0010s02010	POPTR_0010s02040 (11)//POPTR_0010s02010 (11)//POPTR_0044s00210 (10)//POPTR_0010s02020 (9)	scaffold_10:2239558-2239796(-) (11)//scaffold_10:2264946-2265184(-) (9)//scaffold_10:2316135-2316373(-) (11)//scaffold_44:13280-13517(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021170.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.225438.1.S1_at	A	A1TS	POPTR_0012s11650	POPTR_0012s11650 (11)	scaffold_12:11991007-11991355(-) (11)	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os11g37260.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225440.1.S1_at	A	A1TS	POPTR_0154s00220	POPTR_0154s00220 (11)	scaffold_154:12240-12782(+) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225441.1.S1_at	A	A1TS	POPTR_0005s01070	POPTR_0005s01070 (11)	scaffold_5:629445-629856(-) (11)	POPTR_0005s01630 (6)	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225441.1.S1_x_at	A	A1TS	POPTR_0005s01070	POPTR_0005s01070 (11)	scaffold_5:629445-629896(-) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225442.1.S1_at	A	A1TS	POPTR_0005s01090	POPTR_0005s01090 (11)	scaffold_5:655067-655587(-) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT1G07390.2	receptor like protein 1 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225443.1.S1_s_at	A	A1MA	POPTR_0011s10140	POPTR_0011s10140 (11)	scaffold_1:607306-607751(-) (10)//scaffold_1:48222439-48222883(-) (10)//scaffold_10:1279071-1279516(+) (10)//scaffold_11:12645543-12645988(-) (11)//scaffold_1140:6406-6851(+) (10)//scaffold_254:26353-26798(-) (11)//scaffold_423:6895-7340(-) (11)//scaffold_64:62306-62751(-) (11)//scaffold_71:53887-54332(-) (11)	NA	Q05047	Secologanin synthase	AT3G14680.1	"cytochrome P450, family 72, subfamily A, polypeptide 14 "	LOC_Os01g43710.1	"cytochrome P450 72A1, putative, expressed"	Medtr8g045110.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225446.1.S1_at	A	A1TS	POPTR_0003s19930	POPTR_0003s19930 (11)	scaffold_3:18574713-18575229(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225447.1.S1_x_at	A	A2TS	POPTR_0190s00200	POPTR_0190s00200 (10)//POPTR_0019s02190 (9)	scaffold_19:2045371-2045773(-) (9)//scaffold_190:7479-8766(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.225448.1.S1_s_at	A	A1TS	POPTR_0019s03050	POPTR_0019s03050 (11)	scaffold_19:3081861-3082070(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225449.1.S1_at	A	A1TS	POPTR_0019s02000	POPTR_0019s02000 (11)	scaffold_19:1878381-1878935(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.225451.1.S1_x_at	A	A2TS	POPTR_0035s00230	POPTR_0035s00260 (11)//POPTR_0035s00230 (11)	scaffold_35:69437-74931(-) (11)//scaffold_35:114287-114687(-) (11)	POPTR_0117s00220 (6)	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225452.1.S1_at	A	A1TS	POPTR_0035s00260	POPTR_0035s00260 (11)	scaffold_35:111455-111999(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225453.1.S1_x_at	A	A2TS	POPTR_0035s00335	POPTR_0035s00335 (11)//POPTR_0117s00210 (11)	scaffold_117:13868-14148(+) (11)//scaffold_35:194402-194682(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g25740.1	"powdery mildew resistance protein PM3F, putative, expressed"	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225457.1.S1_x_at	A	A1TS	POPTR_0011s01315	POPTR_0011s01315 (11)	scaffold_11:859596-860071(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os10g21400.1	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.225458.1.S1_at	A	A1MS	POPTR_0012s11750	POPTR_0012s11750 (10)	scaffold_12:12075501-12075973(-) (10)	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os12g41170.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225458.1.S1_x_at	A	A1MS	POPTR_0012s11750	POPTR_0012s11750 (10)	scaffold_12:12075310-12075973(-) (10)	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os12g41170.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225459.1.S1_x_at	A	A1TS	POPTR_1151s00200	POPTR_1151s00200 (9)	scaffold_1151:2319-2456(-) (9)	NA	B6GX67	Protein sey1	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os11g37260.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225461.1.S1_at	A	A1TS	POPTR_0012s11670	POPTR_0012s11670 (9)	scaffold_12:12009642-12010766(-) (10)	NA	A8N5E5	Protein SEY1	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os11g37260.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225463.1.S1_s_at	A	A2TS	POPTR_0017s02320	POPTR_0017s02320 (11)//POPTR_0154s00250 (11)	scaffold_154:31611-32033(+) (11)//scaffold_17:1713925-1714347(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr5g028420.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.225464.1.S1_at	A	A1TS	POPTR_0006s17210	POPTR_0006s17210 (11)	scaffold_6:15227229-15227373(+) (11)	NA	NA	NA	AT5G55690.1	MADS-box transcription factor family protein 	NA	NA	Medtr6g005370.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.225464.1.S1_x_at	A	A1TS	POPTR_0006s17210	POPTR_0006s17210 (11)	scaffold_6:15227191-15227403(+) (11)	NA	NA	NA	AT5G55690.1	MADS-box transcription factor family protein 	NA	NA	Medtr6g005370.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.225469.1.S1_s_at	A	A4TS	POPTR_0005s02940	POPTR_0005s02960 (11)//POPTR_0005s02990 (11)//POPTR_0005s02940 (11)//POPTR_0005s02950 (11)	scaffold_5:1886480-1886854(+) (10)//scaffold_5:1912751-1913126(+) (11)//scaffold_5:1930583-1930958(+) (11)//scaffold_5:1942475-1942850(+) (11)//scaffold_5:1961935-1962310(+) (11)	POPTR_0005s02900 (8)	P37122	Cytochrome P450 76A2	AT3G52970.1	"cytochrome P450, family 76, subfamily G, polypeptide 1 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr1g147240.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225470.1.S1_at	A	A1MS	POPTR_0005s02870	POPTR_0005s02870 (10)	scaffold_5:1865677-1865762(-) (10)//scaffold_5:1917701-1917786(-) (10)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr1g099580.1	DIRP; Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225470.1.S1_s_at	A	A1TS	POPTR_0005s02870	POPTR_0005s02870 (11)	scaffold_5:1865787-1867883(-) (11)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr1g099580.1	DIRP; Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225473.1.S1_at	A	A1TS	POPTR_0005s02990	POPTR_0005s02990 (11)	scaffold_5:1961955-1962534(+) (11)	NA	P37122	Cytochrome P450 76A2	AT3G52970.1	"cytochrome P450, family 76, subfamily G, polypeptide 1 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr1g147240.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225474.1.S1_x_at	A	A4TS	POPTR_0005s03040	POPTR_0005s03450 (11)//POPTR_0005s03040 (11)//POPTR_0005s03330 (9)//POPTR_0005s03150 (9)	scaffold_5:1982564-1987987(-) (11)//scaffold_5:2057798-2073598(-) (11)//scaffold_5:2184031-2184496(-) (10)//scaffold_5:2281341-2286764(-) (11)	POPTR_0005s03260 (6)	Q40392	TMV resistance protein N	AT4G16990.1	"disease resistance protein (TIR-NBS class), putative "	LOC_Os07g37950.1	expressed protein	Medtr5g038750.1	TIR 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.225476.1.S1_at	A	A1TS	POPTR_0119s00200	POPTR_0119s00200 (11)	scaffold_119:1961-2417(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225478.1.S1_at	A	A1MS	POPTR_0011s06130	POPTR_0011s06130 (10)	scaffold_11:6207280-6207438(-) (10)//scaffold_11:6554207-6554364(-) (9)//scaffold_11:6726080-6726238(-) (10)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225478.1.S1_x_at	A	A1MS	POPTR_0011s06130	POPTR_0011s06130 (11)	scaffold_11:6207266-6207690(-) (11)//scaffold_11:6554192-6554364(-) (9)//scaffold_11:6726066-6726490(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225481.1.S1_at	A	A1TS	POPTR_0014s00415	POPTR_0014s00415 (11)	scaffold_14:249001-249036(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr4g066980.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225481.1.S1_x_at	A	A1TS	POPTR_0014s00415	POPTR_0014s00415 (11)	scaffold_14:249001-249309(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr4g066980.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225483.1.S1_at	A	A1TS	POPTR_0672s00200	POPTR_0672s00200 (11)	scaffold_672:2171-2726(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12440.1	"receptor kinase, putative, expressed"	Medtr3g093270.1	Protein kinase; ; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225484.1.S1_at	A	A1TS	POPTR_0004s12740	POPTR_0004s12740 (9)	scaffold_4:11996559-11998103(-) (10)	POPTR_0006s06470 (6)	NA	NA	AT3G53270.5	"Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein "	LOC_Os10g35130.1	expressed protein	Medtr8g121380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225485.1.S1_at	A	A1TS	POPTR_0017s05380	POPTR_0017s05380 (11)	scaffold_17:4268972-4269554(+) (11)	NA	NA	NA	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os11g33430.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010620.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225486.1.S1_at	A	A1TS	POPTR_0048s00270	POPTR_0048s00270 (9)	scaffold_48:154626-154760(+) (9)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225486.1.S1_x_at	A	A1TS	POPTR_0048s00270	POPTR_0048s00270 (9)	scaffold_48:154626-154863(+) (9)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225487.1.S1_at	A	A1MS	POPTR_0048s00260	POPTR_0048s00260 (11)	scaffold_48:134526-134993(+) (11)	POPTR_0017s05250 (7)	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os04g55390.1	plant protein of unknown function domain containing protein	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225493.1.S1_at	A	A1TS	POPTR_0003s04290	POPTR_0003s04290 (11)	scaffold_3:5002145-5002313(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G07390.1	receptor like protein 1 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225493.1.S1_x_at	A	A1TS	POPTR_0003s04290	POPTR_0003s04290 (11)	scaffold_3:5002145-5002401(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G07390.1	receptor like protein 1 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225494.1.S1_at	A	A1TS	POPTR_0006s15650	POPTR_0006s15650 (9)	scaffold_6:13116249-13117491(-) (9)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT5G56890.1	Protein kinase superfamily protein 	LOC_Os01g51290.1	"protein kinase family protein, putative, expressed"	Medtr2g045880.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225496.1.S1_x_at	A	A1TS	POPTR_0011s03820	POPTR_0011s03820 (11)	scaffold_11:3879336-3879759(-) (11)	POPTR_0011s03880 (6)	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.2	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g015050.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225497.1.S1_at	A	A1TS	POPTR_0011s03900	POPTR_0011s03900 (11)	scaffold_11:3972180-3972270(-) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36590.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011330.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225498.1.S1_at	A	A1TS	POPTR_0006s14410	POPTR_0006s14410 (11)	scaffold_6:11767461-11768054(-) (11)	NA	Q9ZUE9	Pentatricopeptide repeat-containing protein At2g06000	AT2G06000.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g36840.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g157210.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225501.1.S1_at	A	A1TS	POPTR_0006s12000	POPTR_0006s12000 (11)	scaffold_6:9173931-9174404(+) (11)	NA	Q9LZM4	Wall-associated receptor kinase-like 20	AT5G02070.1	Protein kinase family protein 	LOC_Os05g25390.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr3g092070.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225505.1.S1_at	A	A1TS	POPTR_0006s11630	POPTR_0006s11630 (11)	scaffold_6:8829787-8830698(-) (11)	NA	NA	NA	AT3G52910.1	growth-regulating factor 4 	LOC_Os04g51190.3	"growth-regulating factor, putative, expressed"	Medtr7g126820.1	QLQ 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.225506.1.S1_at	A	A1TS	POPTR_0006s11540	POPTR_0006s11540 (11)	scaffold_6:8751388-8751916(+) (11)	NA	Q9LLL8	Xylem serine proteinase 1	AT5G03620.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os01g52750.1	"OsSub3 - Putative Subtilisin homologue, expressed"	Medtr7g126990.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.225509.1.S1_at	A	A1TS	POPTR_0013s03520	POPTR_0013s03520 (11)	scaffold_13:2195784-2196506(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g02990.1	"leucine-rich repeat receptor-like protein kinase 1, putative"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.22551.1.S1_s_at	A	A1TS	POPTR_0012s03630	POPTR_0012s03630 (11)	scaffold_12:2848014-2848469(+) (11)	NA	Q10251	Eukaryotic translation initiation factor 5B	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein 	LOC_Os05g51500.1	"eukaryotic translation initiation factor 5B, putative, expressed"	Medtr1g125430.1	Small GTP-binding protein domain; Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.225513.1.S1_s_at	A	A1TS	POPTR_0001s15360	POPTR_0001s15360 (11)	scaffold_1:12183069-12183552(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g39930.1	"receptor-like protein kinase, putative"	Medtr5g013190.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225514.1.S1_x_at	A	A1TS	POPTR_0003s19850	POPTR_0003s19850 (11)	scaffold_3:18477902-18478500(+) (11)	POPTR_0003s19950 (6)	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225515.1.S1_x_at	A	A1TS	POPTR_0003s19910	POPTR_0003s19910 (11)	scaffold_3:18527458-18527756(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225517.1.S1_at	A	A1TS	POPTR_0003s19920	POPTR_0003s19920 (9)	scaffold_3:18542991-18543470(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g041120.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225522.1.S1_at	A	A1TS	POPTR_0014s00550	POPTR_0014s00550 (10)	scaffold_14:509263-509788(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039420.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225524.1.S1_at	A	A1TS	POPTR_0077s00240	POPTR_0077s00240 (9)	scaffold_77:76880-77012(-) (9)	POPTR_0019s09820 (6)	Q40392	TMV resistance protein N	AT4G19510.1	Disease resistance protein (TIR-NBS-LRR class) 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr8g021220.1	TIR; Disease resistance protein; Ribosomal protein S19e 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225524.1.S1_x_at	A	A1TS	POPTR_0077s00240	POPTR_0077s00240 (9)	scaffold_77:76775-77023(-) (9)	POPTR_0019s09820 (6)	Q40392	TMV resistance protein N	AT4G19510.1	Disease resistance protein (TIR-NBS-LRR class) 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr8g021220.1	TIR; Disease resistance protein; Ribosomal protein S19e 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225525.1.S1_at	A	A1MS	POPTR_0003s20600	POPTR_0003s20600 (9)	scaffold_3:19086492-19091625(+) (9)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010620.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225528.1.S1_s_at	A	A5TS	POPTR_0019s01560	POPTR_0182s00240 (11)//POPTR_0019s01560 (11)//POPTR_0019s01570 (11)//POPTR_0182s00220 (11)//POPTR_0182s00200 (10)	scaffold_182:2509-2762(-) (10)//scaffold_182:14448-14747(-) (11)//scaffold_182:33907-34206(-) (11)//scaffold_19:1380646-1380945(+) (11)//scaffold_19:1393985-1394284(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os09g13820.1	"pollen signalling protein with adenylyl cyclase activity, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225531.1.S1_s_at	A	A3TS	POPTR_0005s14910	POPTR_0005s14910 (11)//POPTR_0005s14930 (11)//POPTR_0005s14950 (10)	scaffold_5:11794944-11795425(-) (11)//scaffold_5:11806446-11806927(-) (11)//scaffold_5:11813692-11814173(-) (10)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225534.1.S1_at	A	A1TS	POPTR_0031s00320	POPTR_0031s00320 (11)	scaffold_31:148399-148808(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225535.1.S1_s_at	A	A5TS	POPTR_0031s00350	POPTR_0031s00350 (11)//POPTR_0031s00430 (11)//POPTR_0031s00440 (10)//POPTR_0031s00230 (10)//POPTR_0031s00420 (10)	scaffold_31:40908-41133(-) (10)//scaffold_31:175726-175951(+) (11)//scaffold_31:232885-233110(+) (10)//scaffold_31:262182-262407(+) (11)//scaffold_31:289237-289462(+) (10)	POPTR_0031s00361 (7)	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	AC225526_3.1	NB-ARC; AAA ATPase AC225526.7 19758-13755 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225537.1.S1_at	A	A4TS	POPTR_0005s05840	POPTR_0005s05840 (11)//POPTR_0518s00220 (10)//POPTR_0005s05830 (10)//POPTR_0518s00200 (9)	scaffold_5:3807165-3811472(-) (11)//scaffold_5:3811296-3811553(-) (10)//scaffold_518:3774-13376(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os08g13870.1	"S-locus lectin protein kinase family protein, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225538.1.S1_at	A	A4TS	POPTR_0005s05840	POPTR_0005s05840 (10)//POPTR_0518s00220 (10)//POPTR_0518s00200 (10)//POPTR_0005s05830 (9)	scaffold_5:3809000-3813347(-) (10)//scaffold_5:3813167-3813630(-) (9)//scaffold_518:1688-2151(+) (10)//scaffold_518:11274-11737(+) (10)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os08g13870.1	"S-locus lectin protein kinase family protein, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22554.1.S1_at	A	A1TS	POPTR_0010s07380	POPTR_0010s07380 (11)	scaffold_10:8453011-8453421(+) (11)	NA	NA	NA	AT3G04310.1	unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g48820.1	expressed protein	Medtr1g065580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225542.1.S1_at	A	A1TS	POPTR_0019s09730	POPTR_0019s09730 (11)	scaffold_19:11325141-11325288(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225543.1.S1_s_at	A	A3TS	POPTR_0010s24330	POPTR_0010s24330 (11)//POPTR_0466s00200 (9)//POPTR_0010s24340 (9)	scaffold_10:20600051-20600269(+) (11)//scaffold_10:20603525-20603743(+) (9)//scaffold_466:2385-2603(+) (9)	NA	Q02200	Lignin-forming anionic peroxidase	AT1G14550.1	Peroxidase superfamily protein 	LOC_Os02g14430.1	"peroxidase precursor, putative, expressed"	Medtr4g114950.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.225544.1.S1_s_at	A	A2TS	POPTR_0016s03080	POPTR_0016s03080 (11)//POPTR_0016s03090 (11)	scaffold_16:1541486-1541653(-) (11)//scaffold_16:1546281-1546448(-) (11)	NA	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225544.1.S1_x_at	A	A1TS	POPTR_0016s03080	POPTR_0016s03080 (11)	scaffold_16:1541059-1541642(-) (11)	NA	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225545.1.S1_x_at	A	A2MS	POPTR_0001s21560	POPTR_0001s21560 (11)//POPTR_0002s05305 (11)	scaffold_1:20074416-20074775(+) (11)//scaffold_2:3450095-3450454(-) (11)	NA	NA	NA	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os08g07950.1	"NB-ARC domain containing protein, expressed"	Medtr3g094510.1	"Zinc finger, TTF-type; HAT dimerisation "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22555.1.S1_s_at	A	A1TS	POPTR_0009s04160	POPTR_0009s04160 (11)	scaffold_9:4672951-4673360(+) (11)	NA	Q5ZMJ9	Serine/arginine repetitive matrix protein 1	AT2G29210.1	splicing factor PWI domain-containing protein 	LOC_Os03g16369.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g084280.1	Splicing factor PWI 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	NA
PtpAffx.225552.1.S1_s_at	A	A1TS	POPTR_0006s01480	POPTR_0006s01480 (11)	scaffold_6:883696-884032(-) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225559.1.S1_s_at	A	A7TS	POPTR_0004s20340	POPTR_0273s00200 (11)//POPTR_0004s20360 (11)//POPTR_0103s00220 (11)//POPTR_0004s20380 (11)//POPTR_0004s20340 (11)//POPTR_0004s20410 (11)//POPTR_0004s20400 (9)	scaffold_103:66532-66720(-) (11)//scaffold_273:7521-7709(+) (11)//scaffold_4:19901780-19901968(-) (11)//scaffold_4:19929112-19929300(-) (11)//scaffold_4:19955969-19956157(-) (11)//scaffold_4:19970113-19970301(-) (11)//scaffold_4:19991049-19991237(-) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os02g02120.1	OsWAK11 - OsWAK receptor-like protein kinase	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225559.1.S1_x_at	A	A1TS	POPTR_0004s20360	POPTR_0004s20360 (11)	scaffold_4:19929533-19930747(-) (11)	POPTR_0004s20340 (8)	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os04g51050.1	"OsWAK53b - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225561.1.S1_at	A	A1TS	POPTR_0088s00240	POPTR_0088s00240 (10)	scaffold_88:62827-63355(+) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225564.1.S1_at	A	A1TS	POPTR_0010s07110	POPTR_0010s07110 (9)	scaffold_10:8315267-8315320(+) (11)	NA	P46421	Glutathione S-transferase 103-1A	AT2G29450.1	glutathione S-transferase tau  5 	LOC_Os10g38489.1	"glutathione S-transferase GSTU6, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225565.1.S1_at	A	A3TS	POPTR_0010s07100	POPTR_0010s07190 (11)//POPTR_0010s07100 (11)//POPTR_0010s07130 (11)	scaffold_10:8313812-8313856(+) (11)//scaffold_10:8322165-8322209(+) (11)//scaffold_10:8343158-8343202(+) (11)	NA	Q03662	Probable glutathione S-transferase	AT3G09270.1	glutathione S-transferase TAU 8 	LOC_Os05g34150.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225566.1.S1_at	A	A1TS	POPTR_0016s02630	POPTR_0016s02630 (11)	scaffold_16:1301146-1301700(+) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225569.1.S1_at	A	A1TS	POPTR_0001s15360	POPTR_0001s15360 (11)	scaffold_1:12182172-12182769(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g39930.1	"receptor-like protein kinase, putative"	Medtr5g013190.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225574.1.S1_at	A	A1MS	POPTR_0247s00230	POPTR_0247s00230 (10)	scaffold_247:37402-43449(+) (10)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02430.1	"TAK14, putative, expressed"	Medtr1g034760.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225578.1.S1_at	A	A1TS	POPTR_0014s05320	POPTR_0014s05320 (11)	scaffold_14:4015773-4016220(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G28580.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225579.1.S1_at	A	A1TS	POPTR_0014s04720	POPTR_0014s04720 (11)	scaffold_14:3639578-3640140(-) (11)	NA	Q948R1	"Phospholipase A(1) DAD1, chloroplastic"	AT2G44810.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os11g04940.1	"phospholipase, putative"	Medtr7g093240.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.225580.1.S1_at	A	A1TS	POPTR_0014s04700	POPTR_0014s04700 (11)	scaffold_14:3605513-3605839(-) (11)	NA	Q948R1	"Phospholipase A(1) DAD1, chloroplastic"	AT2G44810.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os11g04940.1	"phospholipase, putative"	Medtr7g093240.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.225581.1.S1_at	A	A1TS	POPTR_0014s04310	POPTR_0014s04310 (9)	scaffold_14:3360750-3361006(-) (9)	NA	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.225582.1.S1_at	A	A1TS	POPTR_0014s04130	POPTR_0014s04130 (11)	scaffold_14:3284383-3284955(+) (11)	NA	Q40287	Anthocyanidin 3-O-glucosyltransferase 5	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr5g019500.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225583.1.S1_s_at	A	A5TS	POPTR_0014s03250	POPTR_0014s03280 (11)//POPTR_0014s03260 (11)//POPTR_0014s03320 (11)//POPTR_0014s03290 (11)//POPTR_0014s03250 (11)	scaffold_14:2588271-2588460(+) (11)//scaffold_14:2592313-2592502(+) (11)//scaffold_14:2611263-2611452(+) (11)//scaffold_14:2640050-2648057(+) (11)//scaffold_14:2647871-2648060(+) (9)//scaffold_14:2665593-2665783(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.225584.1.S1_at	A	A1TS	POPTR_0014s03280	POPTR_0014s03280 (11)	scaffold_14:2588023-2588705(+) (11)//scaffold_14:2611014-2611697(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.225585.1.S1_at	A	A1TS	POPTR_0004s02510	POPTR_0004s02510 (11)	scaffold_4:1651502-1657572(+) (11)	POPTR_0004s02500 (6)	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35300.1	"TKL_IRAK_DUF26-lc.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225586.1.S1_at	A	A2MS	POPTR_0018s03930	POPTR_0018s03930 (11)//POPTR_0018s03950 (11)	scaffold_18:3363672-3363739(+) (11)//scaffold_18:3387306-3387377(+) (11)	NA	P73627	Uncharacterized protein sll1770	AT5G24810.1	ABC1 family protein 	LOC_Os06g48770.1	"OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed"	Medtr1g010020.1	"ABC-1; Penicillin-binding protein, transpeptidase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225586.1.S1_s_at	A	A3TS	POPTR_0018s03930	POPTR_0018s03930 (11)//POPTR_0018s04280 (11)//POPTR_0018s03950 (11)	scaffold_18:3361472-3362940(+) (11)//scaffold_18:3385368-3386574(+) (11)//scaffold_18:3611421-3612861(-) (11)	NA	P73627	Uncharacterized protein sll1770	AT5G24810.1	ABC1 family protein 	LOC_Os06g48770.1	"OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed"	Medtr1g010020.1	"ABC-1; Penicillin-binding protein, transpeptidase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225588.1.S1_at	A	A1TS	POPTR_0010s03740	POPTR_0010s03740 (11)	scaffold_10:4536196-4536597(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225588.1.S1_x_at	A	A1TS	POPTR_0010s03740	POPTR_0010s03740 (11)	scaffold_10:4533876-4536597(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225589.1.S1_s_at	A	A2TS	POPTR_0013s12260	POPTR_0013s12260 (11)//POPTR_0013s12280 (9)	scaffold_13:12862565-12862792(+) (11)//scaffold_13:12870917-12871088(+) (9)	NA	O65039	Vignain	AT5G45890.1	senescence-associated gene 12 	LOC_Os04g13090.1	"vignain precursor, putative"	Medtr3g059060.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.225591.1.S1_at	A	A1TS	POPTR_0013s12010	POPTR_0013s12010 (11)	scaffold_13:12689659-12690109(+) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225592.1.S1_s_at	A	A1TS	POPTR_0013s12000	POPTR_0013s12000 (11)	scaffold_13:12678864-12679074(-) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr2g103160.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225592.1.S1_x_at	A	A1TS	POPTR_0013s12000	POPTR_0013s12000 (10)	scaffold_13:12678741-12679225(-) (10)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr2g103160.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225593.1.S1_s_at	A	A3TS	POPTR_0013s11400	POPTR_0013s11400 (11)//POPTR_0013s11460 (11)//POPTR_0013s11420 (9)	scaffold_13:12076485-12076993(+) (11)//scaffold_13:12088494-12089002(+) (10)//scaffold_13:12102100-12102608(+) (11)	NA	NA	NA	AT5G07610.1	F-box family protein 	LOC_Os01g65510.1	"OsFBX31 - F-box domain containing protein, expressed"	Medtr3g058860.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225594.1.S1_s_at	A	A3TS	POPTR_0013s11420	POPTR_0013s11420 (11)//POPTR_0013s11460 (11)//POPTR_0013s11400 (10)	scaffold_13:12076104-12076183(+) (10)//scaffold_13:12087915-12088193(+) (11)//scaffold_13:12101521-12101799(+) (11)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os05g08460.1	"OsFBX164 - F-box domain containing protein, expressed"	Medtr3g058860.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225595.1.S1_at	A	A1TS	POPTR_0013s11400	POPTR_0013s11400 (9)	scaffold_13:12075839-12075937(+) (9)	NA	NA	NA	AT5G07610.1	F-box family protein 	LOC_Os01g65510.1	"OsFBX31 - F-box domain containing protein, expressed"	Medtr3g058860.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225595.1.S1_s_at	A	A3TS	POPTR_0013s11420	POPTR_0013s11420 (11)//POPTR_0013s11460 (11)//POPTR_0013s11400 (9)	scaffold_13:12076227-12076419(+) (11)//scaffold_13:12088237-12088428(+) (11)//scaffold_13:12101843-12102034(+) (11)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os05g08460.1	"OsFBX164 - F-box domain containing protein, expressed"	Medtr3g058860.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225598.1.S1_at	A	A1TS	POPTR_0013s11090	POPTR_0013s11090 (11)	scaffold_13:11776161-11777122(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225599.1.S1_at	A	A1TS	POPTR_0013s10550	POPTR_0013s10550 (11)	scaffold_13:10892303-10893404(+) (11)	NA	P93422	Histidyl-tRNA synthetase	AT3G02760.1	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os05g05840.1	"tRNA synthetase class II core domain containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	NA
PtpAffx.225606.1.S1_at	A	A1TS	POPTR_0001s24990	POPTR_0001s24990 (9)	scaffold_1:24236617-24236775(-) (11)	NA	Q9FJD5	Laccase-17	AT5G60020.1	laccase 17 	LOC_Os01g62600.1	"laccase precursor protein, putative"	Medtr4g084160.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225607.1.S1_s_at	A	A1TS	POPTR_0011s03330	POPTR_0011s03330 (11)	scaffold_11:3472654-3473295(+) (11)	NA	Q9T058	G-type lectin S-receptor-like serine/threonine-protein kinase At4g11900	AT4G11900.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr4g124620.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225608.1.S1_x_at	A	A1TS	POPTR_0019s00430	POPTR_0019s00430 (11)	scaffold_19:221040-221569(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.225609.1.S1_at	A	A1TS	POPTR_0019s00390	POPTR_0019s00390 (10)	scaffold_19:167777-168127(-) (10)	POPTR_0006s11110 (8)//POPTR_0019s00410 (6)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225609.1.S1_x_at	A	A1TS	POPTR_0019s00390	POPTR_0019s00390 (10)	scaffold_19:167253-168127(-) (10)	POPTR_0006s11110 (7)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225610.1.S1_at	A	A2TS	POPTR_0016s09930	POPTR_0016s09930 (11)//POPTR_0016s11500 (11)	scaffold_16:8012804-8012911(-) (11)//scaffold_16:10627233-10627340(+) (11)	NA	Q9SR40	Laccase-7	AT3G09220.1	laccase 7 	LOC_Os07g01110.1	"laccase precursor protein, putative, expressed"	Medtr3g097050.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225613.1.S1_at	A	A1TS	POPTR_0017s00560	POPTR_0017s00560 (11)	scaffold_17:250521-250723(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225613.1.S1_x_at	A	A1TS	POPTR_0017s00560	POPTR_0017s00560 (11)	scaffold_17:250521-250756(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225614.1.S1_at	A	A1TS	POPTR_0017s00570	POPTR_0017s00570 (11)	scaffold_17:270830-271414(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225616.1.S1_at	A	A1MS	POPTR_0017s08080	POPTR_0017s08080 (11)	scaffold_17:6487520-6487781(+) (11)	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os08g07950.1	"NB-ARC domain containing protein, expressed"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225620.1.S1_at	A	A3TS	POPTR_0200s00200	POPTR_0200s00200 (10)//POPTR_1037s00200 (10)//POPTR_0003s21960 (9)	scaffold_1037:2670-3054(-) (10)//scaffold_200:2810-3194(-) (10)//scaffold_200:9552-28016(-) (9)//scaffold_3:19936565-19936953(+) (11)	POPTR_0200s00220 (6)	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12560.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011850.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225621.1.S1_s_at	A	A4TS	POPTR_0019s09470	POPTR_0519s00220 (11)//POPTR_0019s09490 (11)//POPTR_0019s09470 (11)//POPTR_0519s00200 (9)	scaffold_19:11011782-11012201(-) (11)//scaffold_19:11024635-11025054(-) (11)//scaffold_519:5172-13759(-) (11)//scaffold_519:13340-13562(-) (9)	POPTR_0019s09500 (8)//POPTR_0019s09510 (8)	Q6H9K0	Exopolygalacturonase (Fragment)	AT3G07820.1	Pectin lyase-like superfamily protein 	LOC_Os02g10300.1	"polygalacturonase, putative, expressed"	Medtr2g074020.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.225623.1.S1_at	A	A1TS	POPTR_0003s02250	POPTR_0003s02250 (11)	scaffold_3:2344626-2345026(-) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225624.1.S1_at	A	A1TS	POPTR_0003s02710	POPTR_0003s02710 (11)	scaffold_3:2794697-2795274(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT3G15800.1	Glycosyl hydrolase superfamily protein 	LOC_Os02g10660.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr4g005540.1	"Glycoside hydrolase, family 17; Methyl-CpG binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.225628.1.S1_s_at	A	A2TS	POPTR_0017s01830	POPTR_0017s01840 (11)//POPTR_0017s01830 (11)	scaffold_17:1340495-1341664(-) (11)//scaffold_17:1353369-1354539(+) (11)	NA	Q9FNE1	Cysteine-rich receptor-like protein kinase 42	AT5G40380.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 42 	LOC_Os11g28104.1	"TKL_IRAK_DUF26-lf.4 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr3g086260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225629.1.S1_at	A	A1TS	POPTR_0017s01830	POPTR_0017s01830 (11)	scaffold_17:1340625-1340711(-) (11)	NA	Q9FNE1	Cysteine-rich receptor-like protein kinase 42	AT5G40380.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 42 	LOC_Os11g28104.1	"TKL_IRAK_DUF26-lf.4 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr3g086260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225630.1.S1_at	A	A1TS	POPTR_0017s01340	POPTR_0017s01340 (9)	scaffold_17:931880-932017(+) (9)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12450.1	"receptor-like protein kinase 2 precursor, putative"	Medtr5g026330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225631.1.S1_at	A	A1TS	POPTR_0017s01300	POPTR_0017s01300 (11)	scaffold_17:913060-913609(+) (11)	POPTR_0017s01260 (7)	P0CI03	Putative peptide/nitrate transporter At2g37900	AT2G37900.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225633.1.S1_s_at	A	A4TS	POPTR_0015s12540	POPTR_0088s00250 (11)//POPTR_0015s15890 (11)//POPTR_0015s12540 (11)//POPTR_0015s12630 (11)	scaffold_15:12769414-12769594(-) (11)//scaffold_15:12879123-12879303(-) (11)//scaffold_15:15067964-15068144(+) (11)//scaffold_88:73844-73988(+) (11)	POPTR_0015s11910 (7)	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os04g06810.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225634.1.S1_at	A	A1TS	POPTR_0015s15940	POPTR_0015s15940 (11)	scaffold_15:15114696-15114746(+) (11)	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225634.1.S1_x_at	A	A1TS	POPTR_0015s15940	POPTR_0015s15940 (11)	scaffold_15:15114611-15115009(+) (11)	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225635.1.S1_x_at	A	A1TS	POPTR_0008s20310	POPTR_0008s20310 (10)	scaffold_8:14058418-14058843(+) (10)	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os09g14530.1	"hAT dimerisation domain-containing protein, putative"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.225636.1.S1_at	A	A1TS	POPTR_0006s28470	POPTR_0006s28470 (11)	scaffold_6:26143522-26143696(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.225636.1.S1_s_at	A	A6TS	POPTR_0006s28400	POPTR_0006s28420 (11)//POPTR_0006s28470 (11)//POPTR_0006s28520 (11)//POPTR_0157s00210 (11)//POPTR_0006s28400 (11)//POPTR_0006s28440 (11)	scaffold_157:9397-9607(-) (11)//scaffold_6:26092802-26093009(+) (11)//scaffold_6:26107176-26107383(+) (11)//scaffold_6:26124704-26124911(+) (11)//scaffold_6:26143430-26143637(+) (11)//scaffold_6:26167439-26167646(+) (11)//scaffold_6:26191555-26191762(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g26000.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.225636.1.S1_x_at	A	A1TS	POPTR_0006s28470	POPTR_0006s28470 (11)	scaffold_6:26143522-26143696(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.225643.1.S1_at	A	A1TS	POPTR_0015s12610	POPTR_0015s12610 (11)	scaffold_15:12868488-12868718(-) (11)	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225643.1.S1_x_at	A	A1TS	POPTR_0015s12610	POPTR_0015s12610 (11)	scaffold_15:12868488-12868773(-) (11)	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225648.1.S1_at	A	A1TS	POPTR_0011s10845	POPTR_0011s10845 (11)	scaffold_11:13402689-13407385(-) (11)//scaffold_11:13407328-13407384(-) (9)//scaffold_11:13418562-13418619(-) (10)	NA	Q7F1M0	ATP-dependent DNA helicase 2 subunit KU70	AT1G16970.1	KU70 homolog 	LOC_Os07g08729.1	"ATP-dependent DNA helicase 2 subunit 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225648.1.S1_s_at	A	A3TS	POPTR_0011s10840	POPTR_0011s10840 (11)//POPTR_0011s10870 (11)//POPTR_0011s10845 (11)	scaffold_11:13402807-13403111(-) (11)//scaffold_11:13407446-13407750(-) (11)//scaffold_11:13418680-13418984(-) (11)	NA	Q7F1M0	ATP-dependent DNA helicase 2 subunit KU70	AT1G16970.1	KU70 homolog 	LOC_Os07g08729.1	"ATP-dependent DNA helicase 2 subunit 1, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.225648.1.S1_x_at	A	A1TS	POPTR_0011s10845	POPTR_0011s10845 (11)	scaffold_11:13402689-13407385(-) (11)//scaffold_11:13407328-13407767(-) (10)//scaffold_11:13418562-13419001(-) (11)	NA	Q7F1M0	ATP-dependent DNA helicase 2 subunit KU70	AT1G16970.1	KU70 homolog 	LOC_Os07g08729.1	"ATP-dependent DNA helicase 2 subunit 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225649.1.S1_at	A	A6TS	POPTR_0019s08810	POPTR_0019s08860 (11)//POPTR_2697s00200 (11)//POPTR_0019s08810 (11)//POPTR_0019s08830 (11)//POPTR_0019s14400 (9)//POPTR_0019s14380 (9)	scaffold_19:10354117-10354153(-) (11)//scaffold_19:10376452-10376488(-) (11)//scaffold_19:10391703-10391739(-) (11)//scaffold_19:15170539-15170573(-) (9)//scaffold_19:15203201-15203235(-) (9)//scaffold_2697:2088-2124(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225649.1.S1_s_at	A	A11TS	POPTR_0019s08770	POPTR_0019s14310 (11)//POPTR_0019s08780 (11)//POPTR_0019s08860 (11)//POPTR_0019s14340 (11)//POPTR_2697s00200 (11)//POPTR_0019s14400 (11)//POPTR_0019s08770 (11)//POPTR_0019s08810 (11)//POPTR_0019s08830 (11)//POPTR_0019s14380 (10)//POPTR_0019s08890 (9)	scaffold_19:10301595-10301913(-) (11)//scaffold_19:10337508-10337826(-) (11)//scaffold_19:10351066-10354361(-) (11)//scaffold_19:10376378-10376696(-) (11)//scaffold_19:10391629-10391947(-) (11)//scaffold_19:10461484-10461796(-) (11)//scaffold_19:15064590-15064908(-) (11)//scaffold_19:15121550-15121868(-) (11)//scaffold_19:15170463-15170781(-) (10)//scaffold_19:15203125-15203443(-) (11)//scaffold_2697:1880-2198(+) (11)	POPTR_0019s14360 (8)//POPTR_0780s00200 (8)	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225652.1.S1_at	A	A1TS	POPTR_0011s01300	POPTR_0011s01300 (11)	scaffold_11:826391-826425(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225652.1.S1_x_at	A	A1TS	POPTR_0011s01300	POPTR_0011s01300 (10)	scaffold_11:826387-826495(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225656.1.S1_at	A	A2TS	POPTR_0004s02550	POPTR_0138s00210 (11)//POPTR_0004s02550 (11)	scaffold_138:12698-13516(+) (11)//scaffold_4:1686827-1687642(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35580.1	"TKL_IRAK_DUF26-lc.20 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225657.1.S1_x_at	A	A1TS	POPTR_0010s03950	POPTR_0010s03950 (11)	scaffold_10:4668627-4668681(+) (11)//scaffold_11:12726162-12726216(+) (11)//scaffold_13:9834758-9834812(+) (11)//scaffold_136:51380-51434(-) (11)//scaffold_14:17559037-17559091(+) (11)//scaffold_14:17569173-17569227(+) (11)//scaffold_15:7452731-7452785(-) (11)//scaffold_19:7795074-7795128(-) (11)//scaffold_19:7824431-7824485(+) (11)//scaffold_19:7829753-7829787(+) (10)//scaffold_19:9135117-9135171(+) (11)//scaffold_2:17408309-17408471(+) (11)//scaffold_2:17539212-17539266(+) (11)//scaffold_2:17578703-17578757(-) (11)//scaffold_2:19973290-19973344(+) (11)//scaffold_2:19981497-19981551(+) (11)//scaffold_2166:441-603(-) (11)//scaffold_2166:549-583(-) (10)//scaffold_24:314751-314785(+) (10)//scaffold_534:9041-9095(-) (11)//scaffold_544:7833-7887(-) (11)//scaffold_544:13645-13699(-) (11)//scaffold_6:14742411-14742465(-) (11)//scaffold_6:16329818-16329850(+) (9)//scaffold_6:20828068-20828122(-) (11)//scaffold_7:8193425-8193459(-) (10)//scaffold_7:8337686-8337740(-) (11)//scaffold_8:14463074-14463128(-) (11)//scaffold_8:16186057-16186111(+) (11)//scaffold_9:157417-157451(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.225658.1.S1_s_at	A	A2TS	POPTR_0010s24340	POPTR_0466s00200 (11)//POPTR_0010s24340 (11)	scaffold_10:20603066-20603437(+) (11)//scaffold_466:1926-2297(+) (11)	NA	Q02200	Lignin-forming anionic peroxidase	AT1G14550.1	Peroxidase superfamily protein 	LOC_Os03g32050.1	"peroxidase precursor, putative, expressed"	Medtr4g114950.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.225661.1.S1_at	A	A1TS	POPTR_0005s10810	POPTR_0005s10810 (11)	scaffold_5:7750183-7750452(-) (11)	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr8g088950.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.225663.1.S1_at	A	A1TS	POPTR_0005s10840	POPTR_0005s10840 (11)	scaffold_5:7801668-7801907(-) (11)	NA	NA	NA	AT3G51380.1	IQ-domain 20 	LOC_Os03g04210.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g088940.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225664.1.S1_at	A	A1TS	POPTR_0005s10940	POPTR_0005s10940 (10)	scaffold_5:7866126-7866357(-) (10)	NA	P18616	DNA-directed RNA polymerase II subunit RPB1	AT4G35800.1	RNA polymerase II large subunit 	LOC_Os05g05860.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g023000.1	"Protein kinase; RNA polymerase Rpb1, domain 6 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006366|transcription from RNA polymerase II promoter	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	"GO:0005665|""DNA-directed RNA polymerase II, core complex"""
PtpAffx.225665.1.S1_at	A	A1TS	POPTR_0005s10990	POPTR_0005s10990 (11)	scaffold_5:7904231-7904835(-) (11)	NA	Q42560	Aconitate hydratase 1	AT4G35830.1	aconitase 1 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr5g022930.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.225666.1.S1_at	A	A1TS	POPTR_0005s11050	POPTR_0005s11050 (9)	scaffold_5:8010661-8011693(+) (9)	NA	Q9LX20	Aspartic proteinase-like protein 1	AT2G17760.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g15790.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g089280.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225666.1.S1_s_at	A	A1TS	POPTR_0005s11050	POPTR_0005s11050 (11)	scaffold_5:8010698-8011634(+) (11)	NA	Q9LX20	Aspartic proteinase-like protein 1	AT2G17760.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g15790.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g089280.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225667.1.S1_at	A	A1TS	POPTR_0005s11120	POPTR_0005s11120 (11)	scaffold_5:8062015-8062748(+) (11)	NA	Q6ZQ58	La-related protein 1	AT4G35890.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g64190.1	"la domain containing protein, putative, expressed"	Medtr5g022760.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225667.1.S1_s_at	A	A1TS	POPTR_0005s11120	POPTR_0005s11120 (11)	scaffold_5:8062281-8062718(+) (11)	NA	Q6ZQ58	La-related protein 1	AT4G35890.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g64190.1	"la domain containing protein, putative, expressed"	Medtr5g022760.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225668.1.S1_at	A	A1TS	POPTR_0005s11160	POPTR_0005s11160 (11)	scaffold_5:8097997-8098539(-) (11)	NA	Q9ZUB8	F-box protein SKIP22	AT1G23780.1	F-box family protein 	LOC_Os03g12940.3	"OsFBO13 - F-box and other domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225669.1.S1_at	A	A1TS	POPTR_0005s11340	POPTR_0005s11340 (9)	scaffold_5:8207262-8207646(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225670.1.S1_at	A	A1TS	POPTR_0005s11440	POPTR_0005s11440 (11)	scaffold_5:8269313-8269855(+) (11)	NA	NA	NA	AT3G51290.2	Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) 	LOC_Os09g36760.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g022440.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225671.1.S1_at	A	A1TS	POPTR_0005s11510	POPTR_0005s11510 (11)	scaffold_5:8317432-8317860(-) (11)	NA	NA	NA	AT5G66200.1	armadillo repeat only 2 	LOC_Os09g36550.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g022170.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225672.1.S1_s_at	A	A2TS	POPTR_0005s11640	POPTR_0007s09550 (11)//POPTR_0005s11640 (11)	scaffold_5:8435882-8435971(-) (11)//scaffold_7:9013793-9013882(+) (11)	NA	Q9Y4A5	Transformation/transcription domain-associated protein	AT2G17930.1	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain 	LOC_Os07g45070.1	"FAT domain-containing protein, putative, expressed"	Medtr5g021910.1	"PIK-related kinase, FATC "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.225672.1.S1_x_at	A	A1TS	POPTR_0005s11640	POPTR_0005s11640 (11)	scaffold_5:8434716-8435971(-) (11)	NA	Q9Y4A5	Transformation/transcription domain-associated protein	AT2G17930.1	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain 	LOC_Os07g45070.1	"FAT domain-containing protein, putative, expressed"	Medtr5g021910.1	"PIK-related kinase, FATC "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.225673.1.S1_at	A	A1TS	POPTR_0005s11670	POPTR_0005s11670 (11)	scaffold_5:8490231-8492254(+) (11)	NA	Q58E77	WD repeat-containing protein 82-B	AT5G66240.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g40030.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g138930.1	"Protein will die slowly, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225674.1.S1_at	A	A1TS	POPTR_0005s11700	POPTR_0005s11700 (11)	scaffold_5:8530347-8530875(+) (11)	NA	Q4PSN6	F-box/WD-40 repeat-containing protein 1	AT3G21410.1	F-box and associated interaction domains-containing protein 	LOC_Os09g34200.1	OsFBX338 - F-box domain containing protein	Medtr5g105040.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225675.1.S1_at	A	A1TS	POPTR_0005s11850	POPTR_0005s11850 (11)	scaffold_5:8612354-8612690(+) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	Medtr8g090220.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.225676.1.S1_at	A	A1MS	POPTR_0005s11970	POPTR_0005s11970 (11)	scaffold_5:8757205-8757661(-) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr8g090480.1	"LRR receptor-like serine/threonine-protein kinase FLS2 precursor, related "	NA	GO:0005515|protein binding	NA
PtpAffx.225677.1.S1_at	A	A1MS	POPTR_0005s12000	POPTR_0005s12000 (11)	scaffold_5:8770426-8771542(-) (11)	NA	P23706	Floral homeotic protein DEFICIENS	AT3G54340.1	K-box region and MADS-box transcription factor family protein  	LOC_Os06g49840.2	"OsMADS16 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g021220.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.225678.1.S1_at	A	A1TS	POPTR_0005s12050	POPTR_0005s12050 (11)	scaffold_5:8845893-8846673(+) (11)	NA	Q9S7L2	Transcription factor MYB98	AT4G18770.1	myb domain protein 98 	LOC_Os06g06740.1	"MYB family transcription factor, putative, expressed"	Medtr3g114110.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225679.1.S1_at	A	A1TS	POPTR_0005s12100	POPTR_0005s12100 (11)	scaffold_5:8879633-8880152(+) (11)	NA	Q9FFG8	Pentatricopeptide repeat-containing protein At5g44230	AT5G44230.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g47920.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr4g134470.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22568.1.A1_at	A	A1TS	POPTR_0013s08560	POPTR_0013s08560 (10)	scaffold_13:7820081-7820598(-) (10)	NA	NA	NA	AT5G16520.1	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g01040.3	expressed protein	Medtr7g089290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225680.1.S1_at	A	A1TS	POPTR_0005s12160	POPTR_0005s12160 (10)	scaffold_5:8921224-8922846(-) (10)	NA	Q10137	Sec14 cytosolic factor	AT4G36490.1	SEC14-like 12 	LOC_Os02g04030.2	"phosphatidylinositol transfer, putative, expressed"	Medtr8g092800.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225681.1.S1_at	A	A1TS	POPTR_0005s12170	POPTR_0005s12170 (11)	scaffold_5:8931695-8932209(-) (11)	NA	Q38834	Disease resistance RPP13-like protein 4	AT3G50950.1	HOPZ-ACTIVATED RESISTANCE 1 	LOC_Os11g45060.1	"NB-ARC domain containing protein, expressed"	Medtr3g076800.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225682.1.S1_at	A	A1TS	POPTR_0005s12210	POPTR_0005s12210 (11)	scaffold_5:8959631-8960348(-) (11)	NA	A4FLF6	UPF0261 protein SACE_5696	AT5G66420.2	"LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 1232 Blast hits to 1230 proteins in 311 species: Archae - 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). "	LOC_Os06g27800.1	"tm-1GCR237 protein, putative, expressed"	Medtr8g092870.1	"Glycoside hydrolase, family 5; Carbamoyl-phosphate synthase L chain, ATP-binding; Protein of unknown function UPF0261 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225684.1.S1_s_at	A	A2TS	POPTR_0005s12270	POPTR_0005s12270 (11)//POPTR_0007s13120 (11)	scaffold_5:9051687-9051757(-) (11)//scaffold_7:13287479-13287549(+) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT4G36520.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g44310.2	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225684.1.S1_x_at	A	A1TS	POPTR_0005s12270	POPTR_0005s12270 (11)	scaffold_5:9050659-9051780(-) (11)	POPTR_0007s13120 (6)	Q0WQ57	Auxilin-related protein 2	AT4G36520.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g44310.2	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225685.1.S1_at	A	A1TS	POPTR_0005s12320	POPTR_0005s12320 (11)	scaffold_5:9096518-9097270(+) (11)	NA	Q9ZPV8	Phosphopantetheine adenylyltransferase	AT2G18250.1	4-phosphopantetheine adenylyltransferase 	LOC_Os02g04120.1	"cytidylyltransferase domain containing protein, expressed"	Medtr5g020570.1	Dephospho-CoA kinase; Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.225685.1.S1_s_at	A	A1TS	POPTR_0005s12320	POPTR_0005s12320 (11)	scaffold_5:9095244-9096533(+) (11)	NA	Q9ZPV8	Phosphopantetheine adenylyltransferase	AT2G18250.1	4-phosphopantetheine adenylyltransferase 	LOC_Os02g04120.1	"cytidylyltransferase domain containing protein, expressed"	Medtr5g020570.1	Dephospho-CoA kinase; Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.225686.1.S1_at	A	A1TS	POPTR_0005s12460	POPTR_0005s12460 (11)	scaffold_5:9225546-9226046(-) (11)	NA	Q8VZ37	AP-3 complex subunit sigma	AT3G50860.1	Clathrin adaptor complex small chain family protein 	LOC_Os03g12710.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr8g093300.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.225687.1.S1_at	A	A1TS	POPTR_0005s12530	POPTR_0005s12530 (11)	scaffold_5:9305668-9306604(-) (11)	NA	O82663	"Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial"	AT5G66760.1	succinate dehydrogenase 1-1 	LOC_Os07g04240.1	"succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed"	Medtr5g019940.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.225688.1.S1_at	A	A1TS	POPTR_0005s12590	POPTR_0005s12590 (11)	scaffold_5:9371802-9372763(-) (11)	POPTR_0007s12680 (6)	Q9ZNQ8	Proline-rich receptor-like protein kinase PERK4	AT2G18470.1	roline-rich extensin-like receptor kinase 4 	LOC_Os05g12680.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g093550.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225689.1.S1_s_at	A	A1TS	POPTR_0005s12620	POPTR_0005s12620 (11)	scaffold_5:9390348-9392028(-) (11)	NA	Q9SCQ7	Acidic leucine-rich nuclear phosphoprotein 32-related protein	AT3G50690.1	Leucine-rich repeat (LRR) family protein 	LOC_Os07g41694.1	"acidic leucine-rich nuclear phosphoprotein 32-related protein 1, putative, expressed"	Medtr8g093560.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.225689.1.S1_x_at	A	A1TS	POPTR_0005s12620	POPTR_0005s12620 (11)	scaffold_5:9390338-9392129(-) (11)	NA	Q9SCQ7	Acidic leucine-rich nuclear phosphoprotein 32-related protein	AT3G50690.1	Leucine-rich repeat (LRR) family protein 	LOC_Os07g41694.1	"acidic leucine-rich nuclear phosphoprotein 32-related protein 1, putative, expressed"	Medtr8g093560.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.225690.1.S1_at	A	A1TS	POPTR_0005s12670	POPTR_0005s12670 (11)	scaffold_5:9422029-9422554(+) (11)	NA	NA	NA	AT2G18500.1	ovate family protein 7 	LOC_Os01g12690.1	"plant-specific domain TIGR01568 family protein, expressed"	Medtr4g158820.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225690.1.S1_x_at	A	A1TS	POPTR_0005s12670	POPTR_0005s12670 (11)	scaffold_5:9421968-9422554(+) (11)	NA	NA	NA	AT2G18500.1	ovate family protein 7 	LOC_Os01g12690.1	"plant-specific domain TIGR01568 family protein, expressed"	Medtr4g158820.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225691.1.S1_at	A	A1TS	POPTR_0005s12870	POPTR_0005s12870 (11)	scaffold_5:9675483-9676009(+) (11)	NA	Q56XQ0	UPF0496 protein At2g18630	AT2G18630.1	Protein of unknown function (DUF677) 	LOC_Os03g10240.2	"DUF677 domain containing protein, putative, expressed"	Medtr5g019340.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225692.1.S1_at	A	A1TS	POPTR_0005s12880	POPTR_0005s12880 (11)	scaffold_5:9687324-9687831(+) (11)	NA	Q9ZU29	Pentatricopeptide repeat-containing protein At2g01390	AT2G01390.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g21470.2	"pentatricopeptide, putative, expressed"	Medtr4g154950.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225695.1.S1_at	A	A1TS	POPTR_0031s00420	POPTR_0031s00420 (9)	scaffold_31:234704-235138(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225698.1.S1_x_at	A	A2TS	POPTR_0002s07490	POPTR_0002s07490 (11)//POPTR_0014s05845 (10)	scaffold_1:14726572-14726659(+) (10)//scaffold_1:21101267-21101358(-) (11)//scaffold_1:40320077-40320164(+) (10)//scaffold_1:40333919-40334006(+) (10)//scaffold_11:2957495-2957586(+) (11)//scaffold_11:4772201-4772288(+) (10)//scaffold_12:2568930-2568996(-) (9)//scaffold_13:9428248-9428335(-) (9)//scaffold_14:4378441-4378528(-) (10)//scaffold_15:1969622-1969713(+) (11)//scaffold_1607:2180-2271(+) (11)//scaffold_17:12780246-12780312(+) (9)//scaffold_17:13310396-13310483(+) (10)//scaffold_19:8673415-8673481(+) (9)//scaffold_2:5117264-5117355(+) (11)//scaffold_2:17722841-17722907(-) (9)//scaffold_3:6697325-6697412(+) (10)//scaffold_4:7459882-7459973(+) (11)//scaffold_4:8559743-8559809(+) (9)//scaffold_5:4212184-4212271(-) (10)//scaffold_5:9092620-9092707(-) (10)//scaffold_5:18202565-18202652(-) (10)//scaffold_638:4875-4962(+) (10)//scaffold_7:7397357-7397444(-) (10)//scaffold_773:5568-5655(-) (10)//scaffold_8:14262994-14263080(+) (10)	POPTR_0008s20505 (6)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003677|DNA binding	NA
PtpAffx.225701.1.S1_s_at	A	A2TS	POPTR_0018s06950	POPTR_0018s06950 (11)//POPTR_0010s04730 (10)	scaffold_1:19440819-19441035(+) (11)//scaffold_10:5864893-5865109(-) (10)//scaffold_11:12941553-12941769(-) (11)//scaffold_12:3981128-3981416(-) (11)//scaffold_15:5811568-5811784(+) (11)//scaffold_17:9917682-9917898(-) (11)//scaffold_18:7061062-7061278(+) (11)//scaffold_1824:2556-2772(+) (11)	NA	NA	NA	AT4G15020.2	hAT transposon superfamily 	LOC_Os09g32380.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	GO:0003677|DNA binding	NA
PtpAffx.225702.1.S1_at	A	A1TS	POPTR_0011s03250	POPTR_0011s03250 (11)	scaffold_11:3393685-3393806(-) (11)	NA	Q9LV60	Cysteine-rich repeat secretory protein 55	AT5G48540.1	receptor-like protein kinase-related family protein 	LOC_Os03g16950.1	"cysteine-rich repeat secretory protein 55 precursor, putative, expressed"	Medtr2g010780.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225705.1.S1_s_at	A	A1TS	POPTR_0015s15210	POPTR_0015s15210 (11)	scaffold_15:14555722-14555824(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225705.1.S1_x_at	A	A1MS	POPTR_0015s15210	POPTR_0015s15210 (11)	scaffold_15:14555723-14555993(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225708.1.S1_s_at	A	A2TS	POPTR_0019s03280	POPTR_0077s00220 (11)//POPTR_0019s03280 (11)	scaffold_1:42141251-42141414(-) (11)//scaffold_19:3287145-3287308(-) (11)//scaffold_77:41698-41861(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.225711.1.S1_at	A	A1TS	POPTR_0003s19870	POPTR_0003s19870 (11)	scaffold_3:18504890-18505262(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g021730.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225711.1.S1_x_at	A	A1TS	POPTR_0003s19870	POPTR_0003s19870 (11)	scaffold_3:18504799-18505460(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g021730.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225713.1.S1_s_at	A	A1TS	POPTR_0013s13270	POPTR_0013s13270 (11)	scaffold_13:13803037-13803380(-) (11)	NA	Q9FIB2	Putative pentatricopeptide repeat-containing protein At5g09950	AT5G09950.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g40720.1	"pentatricopeptide, putative"	Medtr8g118960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225715.1.S1_at	A	A2TS	POPTR_0017s06330	POPTR_0017s09520 (11)//POPTR_0017s06330 (11)	scaffold_17:4859182-4859369(+) (11)//scaffold_17:8134395-8134582(-) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02600.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr4g098520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225715.1.S1_s_at	A	A2TS	POPTR_0017s09520	POPTR_0017s09520 (11)//POPTR_0017s06330 (10)	scaffold_17:4858803-4859163(+) (10)//scaffold_17:8134601-8134958(-) (11)	NA	Q9FID6	Probable receptor-like protein kinase At5g39020	AT1G66980.1	suppressor of npr1-1 constitutive 4 	LOC_Os01g02600.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr1g034890.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225716.1.S1_at	A	A1TS	POPTR_0017s06310	POPTR_0017s06310 (11)	scaffold_17:4829032-4838682(-) (11)	NA	Q9FID5	Probable receptor-like protein kinase At5g39030	AT5G38260.1	Protein kinase superfamily protein 	LOC_Os01g02300.1	"receptor kinase ORK10, putative, expressed"	Medtr1g034760.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225717.1.S1_at	A	A1TS	POPTR_0017s06280	POPTR_0017s06280 (11)	scaffold_17:4831982-4832368(+) (11)	NA	Q42484	Disease resistance protein RPS2	AT4G26090.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	NA	GO:0005515|protein binding	NA
PtpAffx.225717.1.S1_s_at	A	A2TS	POPTR_0017s06250	POPTR_0017s06250 (11)//POPTR_0017s06280 (9)	scaffold_17:4822235-4822737(+) (11)//scaffold_17:4832022-4832524(+) (11)	POPTR_0017s09540 (7)	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	Medtr5g072700.1	"Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	NA	GO:0005515|protein binding	NA
PtpAffx.225718.1.S1_at	A	A1TS	POPTR_0017s06250	POPTR_0017s06250 (11)	scaffold_17:4823107-4823623(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	Medtr5g072700.1	"Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	NA	GO:0005515|protein binding	NA
PtpAffx.225719.1.S1_at	A	A1TS	POPTR_0017s06060	POPTR_0017s06060 (11)	scaffold_17:4701274-4701752(+) (11)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G62930.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g40020.1	"PPR repeat containing protein, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225720.1.S1_at	A	A1TS	POPTR_0017s05810	POPTR_0017s05810 (11)	scaffold_17:4528313-4528890(-) (11)	NA	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g43040.2	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.225721.1.S1_at	A	A1TS	POPTR_0017s05350	POPTR_0017s05350 (10)	scaffold_17:4230648-4231123(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225722.1.S1_at	A	A1TS	POPTR_0017s04840	POPTR_0017s04840 (11)	scaffold_17:3726395-3726963(-) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT5G44160.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr1g079070.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.225723.1.S1_at	A	A1TS	POPTR_0017s04700	POPTR_0017s04700 (11)	scaffold_17:3605733-3606375(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225724.1.S1_at	A	A1TS	POPTR_0017s04690	POPTR_0017s04690 (11)	scaffold_17:3588922-3589436(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225724.1.S1_x_at	A	A1TS	POPTR_0017s04690	POPTR_0017s04690 (11)	scaffold_17:3588864-3589436(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225725.1.S1_at	A	A1MS	POPTR_0017s00550	POPTR_0017s00550 (11)	scaffold_17:236281-236694(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g029930.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225725.1.S1_x_at	A	A1MS	POPTR_0017s00550	POPTR_0017s00550 (11)	scaffold_17:236187-236694(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g029930.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225726.1.S1_at	A	A1TS	POPTR_0017s04350	POPTR_0017s04350 (11)	scaffold_17:3369461-3369883(+) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os10g04060.1	"powdery mildew resistance protein PM3b, putative"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225727.1.S1_at	A	A6TS	POPTR_0001s31105	POPTR_0013s01720 (11)//POPTR_0001s31105 (11)//POPTR_0001s40220 (11)//POPTR_0015s13960 (9)//POPTR_0009s01215 (9)//POPTR_0004s13680 (9)	scaffold_1:29463167-29463737(+) (11)//scaffold_1:39589585-39590154(-) (11)//scaffold_13:979579-980148(-) (11)//scaffold_15:13722568-13723137(-) (9)//scaffold_19:2905301-2905496(-) (9)//scaffold_206:18044-18239(+) (9)//scaffold_4:14086154-14086349(+) (9)//scaffold_7:313868-314063(-) (9)//scaffold_9:1417530-1417725(-) (9)//scaffold_9:11508065-11508260(+) (9)	POPTR_0002s22610 (6)//POPTR_0011s13140 (6)	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os11g39940.1	"transposon protein, putative, unclassified"	Medtr3g019170.1	Terpenoid synthase 	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.225727.1.S1_x_at	A	A5TS	POPTR_0001s31105	POPTR_0001s31105 (11)//POPTR_0001s40220 (11)//POPTR_0013s01720 (10)//POPTR_0004s13680 (10)//POPTR_0009s01215 (9)	scaffold_1:29463176-29463737(+) (11)//scaffold_1:39589585-39590145(-) (11)//scaffold_11:15848379-15848806(+) (9)//scaffold_13:979579-980139(-) (11)//scaffold_15:13722568-13723128(-) (9)//scaffold_19:2905301-2905728(-) (10)//scaffold_206:17812-18239(+) (10)//scaffold_4:14085927-14086349(+) (10)//scaffold_7:313868-314295(-) (10)//scaffold_9:1417530-1417725(-) (9)//scaffold_9:11507833-11508260(+) (10)	POPTR_0015s13960 (8)//POPTR_0002s22610 (6)//POPTR_0011s13140 (6)	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os11g39940.1	"transposon protein, putative, unclassified"	Medtr3g019170.1	Terpenoid synthase 	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.225728.1.S1_at	A	A1TS	POPTR_0004s09520	POPTR_0004s09520 (11)	scaffold_4:8058588-8059154(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g51660.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.225730.1.S1_at	A	A1TS	POPTR_0008s18550	POPTR_0008s18550 (9)	scaffold_8:12525421-12525463(+) (9)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT1G74190.1	receptor like protein 15 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225730.1.S1_x_at	A	A1TS	POPTR_0008s18550	POPTR_0008s18550 (9)	scaffold_8:12525421-12525699(+) (9)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT1G74190.1	receptor like protein 15 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225731.1.S1_x_at	A	A1TS	POPTR_0008s18570	POPTR_0008s18570 (9)	scaffold_8:12537762-12538233(+) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT3G53240.1	receptor like protein 45 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225732.1.S1_at	A	A1TS	POPTR_0011s12930	POPTR_0011s12930 (11)	scaffold_11:15633478-15634404(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr6g013320.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225733.1.S1_s_at	A	A2TS	POPTR_0011s12910	POPTR_0011s12920 (11)//POPTR_0011s12910 (11)	scaffold_11:15613176-15613449(+) (11)//scaffold_11:15623828-15624101(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021290.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225734.1.S1_s_at	A	A2TS	POPTR_0012s11460	POPTR_0012s12720 (11)//POPTR_0012s11460 (11)	scaffold_12:11884085-11884456(+) (11)//scaffold_12:13165520-13165891(-) (11)	NA	Q84WM7	Pectinesterase PPME1	AT1G69940.1	Pectin lyase-like superfamily protein 	LOC_Os05g44600.1	"pectinesterase, putative, expressed"	Medtr8g133070.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.225737.1.S1_at	A	A1TS	POPTR_0002s20580	POPTR_0002s20580 (11)	scaffold_2:16669964-16670003(-) (11)	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os01g36064.1	"hAT dimerisation domain-containing protein, putative, expressed"	Medtr3g033680.1	HAT dimerisation 	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.225738.1.S1_at	A	A1TS	POPTR_0011s01170	POPTR_0011s01170 (11)	scaffold_11:700341-701617(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g021630.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225738.1.S1_x_at	A	A1TS	POPTR_0011s01170	POPTR_0011s01170 (11)	scaffold_11:700341-701617(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g021630.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225739.1.S1_at	A	A1TS	POPTR_0004s20290	POPTR_0004s20290 (11)	scaffold_4:19876389-19876983(+) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os04g51050.1	"OsWAK53b - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225740.1.S1_at	A	A1TS	POPTR_0004s20300	POPTR_0004s20300 (11)	scaffold_4:19883689-19884125(-) (11)	POPTR_1539s00200 (6)	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os02g02120.1	OsWAK11 - OsWAK receptor-like protein kinase	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225741.1.S1_at	A	A1TS	POPTR_0004s20310	POPTR_0004s20310 (11)	scaffold_4:19889132-19889456(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225741.1.S1_s_at	A	A1TS	POPTR_0004s20310	POPTR_0004s20310 (11)	scaffold_4:19889342-19889597(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225742.1.S1_s_at	A	A2TS	POPTR_0004s20330	POPTR_0004s20330 (11)//POPTR_0004s20350 (10)	scaffold_4:19893327-19893717(-) (11)//scaffold_4:19918303-19919303(-) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os04g51050.1	"OsWAK53b - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225745.1.S1_at	A	A1TS	POPTR_0004s20350	POPTR_0004s20350 (11)	scaffold_4:19918077-19918160(-) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os09g29560.1	OsWAK83 - OsWAK pseudogene	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225751.1.S1_at	A	A1TS	POPTR_0004s20760	POPTR_0004s20760 (11)	scaffold_4:20180134-20180788(+) (11)	NA	P32110	Probable glutathione S-transferase	AT5G62480.1	glutathione S-transferase tau 9 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr5g043840.1	"Glutathione S-transferase, C-terminal-like; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225752.1.S1_at	A	A1TS	POPTR_0004s20870	POPTR_0004s20870 (11)	scaffold_4:20245720-20246147(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039190.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225753.1.S1_at	A	A1TS	POPTR_0004s21740	POPTR_0004s21740 (11)	scaffold_4:20774023-20774615(+) (11)	NA	O65493	Xylem cysteine proteinase 1	AT4G35350.1	xylem cysteine peptidase 1 	LOC_Os05g01810.1	"xylem cysteine proteinase 2 precursor, putative, expressed"	Medtr3g159890.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.225754.1.S1_at	A	A1TS	POPTR_0004s21780	POPTR_0004s21780 (11)	scaffold_4:20791256-20791826(+) (11)	NA	Q9SI53	"Pentatricopeptide repeat-containing protein At2g03880, mitochondrial"	AT2G03880.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g27790.1	"pentatricopeptide, putative, expressed"	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225756.1.S1_at	A	A3TS	POPTR_0004s18980	POPTR_0004s18980 (11)//POPTR_0004s19070 (11)//POPTR_0004s10930 (9)	scaffold_4:9507559-9507715(-) (9)//scaffold_4:18828138-18832629(-) (11)//scaffold_4:18832518-18832674(-) (9)//scaffold_4:18972842-18972998(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225756.1.S1_x_at	A	A3TS	POPTR_0004s18980	POPTR_0004s18980 (11)//POPTR_0004s19070 (11)//POPTR_0004s10930 (9)	scaffold_4:9500851-9507821(-) (9)//scaffold_4:18828063-18832629(-) (11)//scaffold_4:18832443-18832780(-) (9)//scaffold_4:18972767-18973104(-) (11)	POPTR_0004s10940 (7)//POPTR_0004s10950 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225765.1.S1_s_at	A	A2TS	POPTR_0018s02440	POPTR_0018s02440 (11)//POPTR_0018s02450 (10)	scaffold_18:2208058-2208506(+) (11)//scaffold_18:2224366-2224678(+) (10)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g36090.1	"receptor kinase, putative, expressed"	Medtr8g078000.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.225766.1.S1_at	A	A1TS	POPTR_1134s00210	POPTR_1134s00210 (11)	scaffold_1134:4267-4820(-) (11)	NA	P0CI03	Putative peptide/nitrate transporter At2g37900	AT2G37900.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225767.1.S1_at	A	A4MS	POPTR_0001s42310	POPTR_0001s43920 (9)//POPTR_0001s42310 (9)//POPTR_0001s43860 (9)//POPTR_0001s44380 (9)	scaffold_1:42066186-42066218(-) (9)//scaffold_1:44236658-44236690(-) (9)//scaffold_1:44320975-44321007(-) (9)//scaffold_1:44805392-44805424(+) (9)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.225767.1.S1_s_at	A	A4TS	POPTR_0001s42300	POPTR_0001s43850 (11)//POPTR_0001s42300 (11)//POPTR_0001s42310 (11)//POPTR_0001s44380 (11)	scaffold_1:42042679-42043035(+) (11)//scaffold_1:42066410-42066766(-) (11)//scaffold_1:44219542-44219898(+) (11)//scaffold_1:44321199-44321558(-) (11)//scaffold_1:44804844-44805200(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225767.1.S1_x_at	A	A1MS	POPTR_0001s44380	POPTR_0001s44380 (11)	scaffold_1:44805020-44805424(+) (11)	POPTR_0001s43920 (7)//POPTR_0001s42310 (7)//POPTR_0001s43860 (7)	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225768.1.S1_at	A	A2MS	POPTR_0005s05850	POPTR_0005s05850 (11)//POPTR_0518s00210 (11)	scaffold_5:3818025-3818397(+) (11)//scaffold_518:6517-6890(-) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os08g13420.1	"S-domain receptor-like protein kinase, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225769.1.S1_s_at	A	A4TS	POPTR_0005s05830	POPTR_0005s05840 (11)//POPTR_0518s00220 (11)//POPTR_0005s05830 (11)//POPTR_0518s00200 (11)	scaffold_5:3807497-3807879(-) (11)//scaffold_5:3811628-3812010(-) (11)//scaffold_518:3269-3651(+) (11)//scaffold_518:12867-13249(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os08g13870.1	"S-locus lectin protein kinase family protein, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225773.1.S1_at	A	A1TS	POPTR_0005s04650	POPTR_0005s04650 (11)	scaffold_5:3116984-3117542(-) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os01g57410.3	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225774.1.S1_at	A	A1TS	POPTR_0005s04000	POPTR_0005s04000 (9)	scaffold_5:2670042-2670784(+) (11)	NA	P25317	Probable glutathione S-transferase parA	AT1G78340.1	glutathione S-transferase TAU 22 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225775.1.S1_at	A	A2TS	POPTR_0005s03930	POPTR_0005s03930 (11)//POPTR_0005s03970 (11)	scaffold_5:2602377-2602948(+) (11)//scaffold_5:2642045-2642616(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47090.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g23190.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr4g137750.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225776.1.S1_s_at	A	A1TS	POPTR_0005s03360	POPTR_0005s03360 (11)	scaffold_5:2154588-2155129(-) (10)//scaffold_5:2202381-2202922(-) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g011710.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225779.1.S1_x_at	A	A1TS	POPTR_0005s03120	POPTR_0005s03120 (11)	scaffold_5:2058222-2058256(-) (11)	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225780.1.S1_at	A	A1TS	POPTR_0001s36460	POPTR_0001s36460 (11)	scaffold_1:35079596-35080330(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	NA	NA	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225782.1.S1_at	A	A1TS	POPTR_0011s16540	POPTR_0011s16540 (11)	scaffold_11:18404069-18404548(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225783.1.S1_at	A	A1TS	POPTR_0019s01995	POPTR_0019s01995 (11)	scaffold_19:1842291-1842701(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225790.1.S1_at	A	A1TS	POPTR_0015s05890	POPTR_0015s05890 (11)	scaffold_15:6216619-6217247(-) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os11g35840.1	conserved hypothetical protein	Medtr5g093230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225791.1.S1_at	A	A2TS	POPTR_0015s05880	POPTR_0015s05880 (11)//POPTR_0015s05830 (9)	scaffold_15:6161212-6161579(-) (9)//scaffold_15:6205491-6205858(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os06g04830.1	"leucine rich repeat protein, putative, expressed"	Medtr3g034110.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225795.1.S1_s_at	A	A1TS	POPTR_0162s00220	POPTR_0162s00220 (11)	scaffold_162:731-9785(-) (11)	POPTR_0162s00200 (8)	NA	NA	NA	NA	LOC_Os07g35050.1	"OsFBX237 - F-box domain containing protein, expressed"	Medtr3g058860.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225800.1.S1_x_at	A	A4TS	POPTR_0011s02170	POPTR_0011s02170 (11)//POPTR_0011s03690 (11)//POPTR_0011s03640 (11)//POPTR_0011s03720 (11)	scaffold_11:1814434-1824296(-) (11)//scaffold_11:3741890-3741970(-) (11)//scaffold_11:3786651-3786731(-) (11)//scaffold_11:3804197-3804277(-) (11)	POPTR_0011s02090 (8)//POPTR_0011s03670 (8)//POPTR_0011s02200 (7)//POPTR_0011s02160 (6)	O64774	G-type lectin S-receptor-like serine/threonine-protein kinase At1g61460	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os09g37840.1	"carbohydrate binding protein, putative"	Medtr3g020940.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225801.1.S1_at	A	A1TS	POPTR_0062s00250	POPTR_0062s00250 (11)	scaffold_62:83405-83833(-) (11)	POPTR_0062s00270 (7)	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225802.1.S1_s_at	A	A4TS	POPTR_0015s15150	POPTR_0015s15150 (10)//POPTR_0015s15180 (10)//POPTR_0113s00240 (10)//POPTR_0015s15210 (10)	scaffold_113:25170-25203(+) (10)//scaffold_15:14513214-14513247(+) (10)//scaffold_15:14535282-14535315(+) (10)//scaffold_15:14555122-14555155(+) (10)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	NA	GO:0005515|protein binding	NA
PtpAffx.225804.1.S1_at	A	A1TS	POPTR_0008s22430	POPTR_0008s22430 (10)	scaffold_8:16921312-16921743(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g110440.1	TIR; Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225805.1.S1_s_at	A	A1TS	POPTR_0035s00310	POPTR_0035s00310 (9)	scaffold_35:171646-171710(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225805.1.S1_x_at	A	A1TS	POPTR_0035s00310	POPTR_0035s00310 (10)	scaffold_35:171011-171710(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225809.1.S1_at	A	A1TS	POPTR_0004s02810	POPTR_0004s02810 (11)	scaffold_4:1837063-1837150(+) (9)//scaffold_4:1840596-1840683(+) (9)//scaffold_4:1859074-1860867(+) (11)	NA	Q9LPZ3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410	AT1G11410.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124500.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225810.1.S1_s_at	A	A2TS	POPTR_0011s12480	POPTR_0011s12500 (11)//POPTR_0011s12480 (11)	scaffold_11:15211603-15211941(-) (11)//scaffold_11:15221758-15222096(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr3g076270.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.225811.1.S1_s_at	A	A7TS	POPTR_0015s15050	POPTR_0015s15150 (11)//POPTR_0015s15050 (11)//POPTR_0015s15180 (11)//POPTR_0113s00240 (11)//POPTR_0015s15100 (11)//POPTR_0015s15110 (11)//POPTR_0015s15210 (11)	scaffold_113:27752-27902(+) (11)//scaffold_15:14417813-14417963(+) (11)//scaffold_15:14471013-14471163(+) (11)//scaffold_15:14485178-14485328(+) (11)//scaffold_15:14515652-14515802(+) (11)//scaffold_15:14537431-14537581(+) (11)//scaffold_15:14557703-14557853(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225814.1.S1_at	A	A1TS	POPTR_0019s00540	POPTR_0019s00540 (11)	scaffold_19:326320-326667(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.225814.1.S1_x_at	A	A1TS	POPTR_0019s00540	POPTR_0019s00540 (11)	scaffold_19:326320-326667(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.225816.1.S1_x_at	A	A1TS	POPTR_0031s00200	POPTR_0031s00200 (11)	scaffold_31:8942-9443(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225817.1.S1_at	A	A1TS	POPTR_0013s04990	POPTR_0013s04990 (11)	scaffold_13:3525293-3525400(-) (11)	NA	C0LGV0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g26140.1	"cysteine-rich receptor-like protein kinase 4 precursor, putative"	Medtr7g143320.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225818.1.S1_at	A	A1MS	POPTR_0011s15760	POPTR_0011s15760 (9)	scaffold_11:17840077-17841371(-) (10)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225819.1.S1_at	A	A1TS	POPTR_0060s00275	POPTR_0060s00275 (11)	scaffold_60:77796-78212(-) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	NA	GO:0005515|protein binding	NA
PtpAffx.225821.1.S1_s_at	A	A2TS	POPTR_0012s11650	POPTR_0012s11650 (11)//POPTR_0012s11670 (11)	scaffold_12:11993694-11994421(-) (11)//scaffold_12:12012508-12013248(-) (11)	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os11g37260.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225822.1.S1_x_at	A	A1TS	POPTR_0012s11660	POPTR_0012s11660 (11)	scaffold_12:11999693-12000732(-) (11)	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os12g41170.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225823.1.S1_x_at	A	A1MS	POPTR_0011s03840	POPTR_0011s03840 (11)	scaffold_11:3914355-3914859(-) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.225824.1.S1_s_at	A	A1TS	POPTR_0004s20300	POPTR_0004s20300 (11)	scaffold_4:19884150-19884521(-) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os02g02120.1	OsWAK11 - OsWAK receptor-like protein kinase	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225825.1.S1_x_at	A	A1TS	POPTR_0015s07020	POPTR_0015s07020 (11)	scaffold_15:8103964-8104691(-) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225827.1.S1_at	A	A1TS	POPTR_0015s06210	POPTR_0015s06210 (11)	scaffold_15:6546789-6547205(+) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT1G48940.1	early nodulin-like protein 6 	LOC_Os04g57750.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g116560.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.225828.1.S1_s_at	A	A2TS	POPTR_0001s14610	POPTR_0001s14610 (11)//POPTR_0001s14600 (10)	scaffold_1:11452951-11463222(+) (11)//scaffold_1:11462464-11463666(+) (10)	NA	P0C8Y0	Camelliol C synthase	AT1G78955.1	camelliol C synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.225833.1.S1_x_at	A	A1TS	POPTR_0154s00230	POPTR_0154s00230 (11)	scaffold_154:11449-20318(+) (11)	POPTR_0154s00250 (6)//POPTR_0017s02310 (6)	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225834.1.S1_s_at	A	A1TS	POPTR_0017s04350	POPTR_0017s04350 (11)	scaffold_13:7380485-7380788(+) (10)//scaffold_17:3363319-3363633(+) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os10g04060.1	"powdery mildew resistance protein PM3b, putative"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225835.1.S1_s_at	A	A3TS	POPTR_0007s07360	POPTR_0007s07370 (11)//POPTR_0007s07360 (11)//POPTR_0007s07410 (11)	scaffold_7:5701602-5702209(-) (11)//scaffold_7:5719071-5719679(-) (11)//scaffold_7:5734687-5735295(-) (11)	NA	P59287	"Casbene synthase, chloroplastic"	AT5G23960.2	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.225836.1.S1_x_at	A	A1TS	POPTR_0035s00380	POPTR_0035s00380 (11)	scaffold_35:216449-216658(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os12g03080.1	"rp3 protein, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.22584.1.S1_s_at	A	A1TS	POPTR_0011s09200	POPTR_0011s09200 (11)	scaffold_11:11368127-11368483(-) (11)	NA	Q9FIA1	GDSL esterase/lipase At5g55050	AT5G55050.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g38470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g100470.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.225845.1.S1_s_at	A	A1TS	POPTR_0011s03920	POPTR_0011s03920 (11)	scaffold_11:3986340-3987380(-) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.2	S-locus lectin protein kinase family protein 	LOC_Os07g36590.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225846.1.S1_at	A	A1TS	POPTR_0017s02680	POPTR_0017s02680 (11)	scaffold_17:1923933-1924658(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os09g14490.1	"TIR-NBS type disease resistance protein, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.225847.1.S1_x_at	A	A1MS	POPTR_0080s00240	POPTR_0080s00240 (11)	scaffold_80:68075-68515(-) (11)	POPTR_0001s43160 (8)	Q9LW83	G-type lectin S-receptor-like serine/threonine-protein kinase CES101	AT3G16030.1	lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225850.1.S1_at	A	A2TS	POPTR_0019s01320	POPTR_0019s01320 (9)//POPTR_0408s00200 (9)	scaffold_19:1157756-1158251(-) (9)//scaffold_408:6185-6680(-) (9)	POPTR_0121s00250 (8)//POPTR_0019s03330 (8)//POPTR_0019s01440 (8)//POPTR_0019s03990 (7)	P59287	"Casbene synthase, chloroplastic"	AT5G23960.2	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.225850.1.S1_x_at	A	A1TS	POPTR_0019s01440	POPTR_0019s01440 (9)	scaffold_19:1254882-1255453(-) (9)	POPTR_0019s01320 (8)//POPTR_0121s00250 (7)//POPTR_0019s03330 (7)//POPTR_0408s00200 (7)	P59287	"Casbene synthase, chloroplastic"	AT5G23960.2	terpene synthase 21 	LOC_Os08g04500.2	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.225852.1.S1_at	A	A1TS	POPTR_0001s05190	POPTR_0001s05190 (11)	scaffold_1:3983353-3983400(+) (11)//scaffold_1:4015983-4016030(+) (11)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12600.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011850.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225856.1.S1_at	A	A1TS	POPTR_0672s00200	POPTR_0672s00200 (11)	scaffold_672:3038-3444(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12440.1	"receptor kinase, putative, expressed"	Medtr3g093270.1	Protein kinase; ; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225861.1.S1_at	A	A1TS	POPTR_0001s42030	POPTR_0001s42030 (11)	scaffold_1:41772334-41772542(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225861.1.S1_x_at	A	A1TS	POPTR_0001s42030	POPTR_0001s42030 (11)	scaffold_1:41772334-41772997(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225863.1.S1_x_at	A	A2TS	POPTR_0011s02080	POPTR_0011s02080 (11)//POPTR_0011s02170 (11)	scaffold_11:1744341-1744914(-) (11)//scaffold_11:1823500-1824073(-) (11)	POPTR_0011s03690 (7)	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.225864.1.S1_at	A	A1TS	POPTR_0005s05180	POPTR_0005s05180 (11)	scaffold_5:3444309-3444804(-) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr6g088920.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225866.1.S1_x_at	A	A1TS	POPTR_0019s14310	POPTR_0019s14310 (11)	scaffold_19:15063755-15063989(-) (11)	POPTR_0019s14960 (8)//POPTR_0019s14990 (7)//POPTR_0019s15000 (7)//POPTR_0019s14780 (6)	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225869.1.S1_at	A	A1TS	POPTR_0001s20710	POPTR_0001s20710 (11)	scaffold_1:18820878-18821651(+) (11)	NA	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT3G13690.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	Medtr2g121520.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225869.1.S1_s_at	A	A1TS	POPTR_0001s20710	POPTR_0001s20710 (11)	scaffold_1:18821671-18822461(+) (11)	POPTR_0003s02960 (6)	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT3G13690.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	Medtr2g121520.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225870.1.S1_at	A	A1TS	POPTR_0011s03680	POPTR_0011s03680 (11)	scaffold_11:3770927-3771183(-) (11)	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124460.1	"EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.225872.1.S1_at	A	A1TS	POPTR_0005s14930	POPTR_0005s14930 (10)	scaffold_5:11804261-11805050(-) (10)	POPTR_0005s14950 (7)	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31550.1	"disease resistance protein RGA4, putative"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225873.1.S1_at	A	A1TS	POPTR_0012s01080	POPTR_0012s01080 (11)	scaffold_12:754147-754355(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os02g17400.1	"leucine rich repeat protein, putative"	Medtr4g137570.1	"HcrVf3 protein, related "	NA	GO:0005515|protein binding	NA
PtpAffx.225876.1.S1_s_at	A	A1TS	POPTR_0113s00210	POPTR_0113s00210 (9)	scaffold_113:10453-10485(+) (9)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g116690.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225877.1.S1_s_at	A	A2TS	POPTR_0011s12910	POPTR_0011s12920 (11)//POPTR_0011s12910 (11)	scaffold_11:15612542-15612905(+) (11)//scaffold_11:15623194-15623557(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021290.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225878.1.S1_x_at	A	A3TS	POPTR_0005s03440	POPTR_0005s03440 (10)//POPTR_0005s03330 (9)//POPTR_0005s03150 (9)	scaffold_5:1982988-1983027(-) (10)//scaffold_5:2067944-2067976(-) (9)//scaffold_5:2184462-2184494(-) (9)//scaffold_5:2235687-2235726(-) (11)//scaffold_5:2281765-2281804(-) (10)//scaffold_5:2316458-2316497(-) (11)	NA	Q40392	TMV resistance protein N	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.22588.1.S1_at	A	A1TS	POPTR_0008s02170	POPTR_0008s02170 (11)	scaffold_8:1040591-1041123(+) (11)	NA	Q9SR72	Germin-like protein subfamily 3 member 2	AT3G10080.1	RmlC-like cupins superfamily protein 	LOC_Os02g32980.1	"Cupin domain containing protein, expressed"	Medtr6g005270.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.225881.1.S1_x_at	A	A1TS	POPTR_0019s09860	POPTR_0019s09860 (11)	scaffold_19:11479246-11479533(+) (11)	POPTR_0019s09820 (8)//POPTR_0019s09840 (6)//POPTR_0019s09880 (6)//POPTR_0019s09850 (6)	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225883.1.S1_at	A	A1TS	POPTR_0018s02985	POPTR_0018s02985 (9)	scaffold_11:1329361-1329433(+) (9)//scaffold_11:1589557-1589629(+) (9)//scaffold_18:2594503-2595184(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.225884.1.S1_at	A	A3TS	POPTR_0005s01610	POPTR_0005s01640 (11)//POPTR_0005s01610 (11)//POPTR_0005s01620 (11)	scaffold_5:1060241-1060283(+) (11)//scaffold_5:1067161-1067203(+) (11)//scaffold_5:1088048-1095224(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74170.1	receptor like protein 13 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225884.1.S1_s_at	A	A3TS	POPTR_0005s01620	POPTR_0005s01640 (11)//POPTR_1122s00200 (11)//POPTR_0005s01620 (11)	scaffold_1122:2809-2948(+) (11)//scaffold_5:1059905-1066964(+) (11)//scaffold_5:1094852-1094991(+) (11)	POPTR_0056s00220 (7)	Q9C7S5	Tyrosine-sulfated glycopeptide receptor 1	AT1G74190.1	receptor like protein 15 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225884.1.S1_x_at	A	A3TS	POPTR_0005s01610	POPTR_0005s01640 (11)//POPTR_0005s01610 (11)//POPTR_0005s01620 (11)	scaffold_5:1059879-1060283(+) (11)//scaffold_5:1066799-1067203(+) (11)//scaffold_5:1087872-1095221(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74170.1	receptor like protein 13 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225888.1.S1_x_at	A	A1TS	POPTR_0017s10840	POPTR_0017s10840 (9)	scaffold_1:11808422-11808841(-) (9)//scaffold_11:2607890-2608311(+) (10)//scaffold_17:10383910-10384318(-) (10)//scaffold_19:1815541-1815949(-) (9)//scaffold_2:16670030-16670359(-) (9)//scaffold_20:710725-711126(+) (9)//scaffold_4:20975345-20975766(+) (11)//scaffold_5:5954335-5954743(+) (9)	POPTR_0020s00460 (8)//POPTR_0017s08080 (7)//POPTR_0001s42600 (7)//POPTR_0014s15905 (7)//POPTR_0003s04450 (7)	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os08g07950.1	"NB-ARC domain containing protein, expressed"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225889.1.S1_x_at	A	A1MS	POPTR_0006s19900	POPTR_0006s19900 (11)	scaffold_6:18916710-18917114(-) (11)	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT2G06541.2	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os08g07950.1	"NB-ARC domain containing protein, expressed"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.225890.1.S1_at	A	A1TS	POPTR_0018s14510	POPTR_0018s14510 (11)	scaffold_18:14694088-14694615(+) (11)	NA	Q9C9L5	Wall-associated receptor kinase-like 9	AT1G69730.1	Wall-associated kinase family protein 	LOC_Os02g56370.1	"OsWAK20 - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225895.1.S1_s_at	A	A2TS	POPTR_0007s08675	POPTR_0007s08675 (11)//POPTR_0009s00560 (11)	scaffold_7:7869056-7869091(+) (11)//scaffold_9:529102-529135(-) (11)	POPTR_0007s08900 (8)//POPTR_0010s04033 (8)	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225898.1.S1_s_at	A	A2TS	POPTR_0005s04365	POPTR_0077s00220 (11)//POPTR_0005s04365 (11)	scaffold_1:42140510-42140965(-) (11)//scaffold_25:15434-15594(+) (11)//scaffold_5:2938771-2938931(+) (11)//scaffold_77:41251-41411(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074430.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.225907.1.S1_at	A	A1TS	POPTR_0007s10540	POPTR_0007s10540 (11)	scaffold_7:10559312-10559636(+) (11)	NA	NA	NA	AT3G51700.1	PIF1 helicase 	LOC_Os11g44830.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g077250.1	"Protein of unknown function DUF889, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225907.1.S1_s_at	A	A3TS	POPTR_0007s10540	POPTR_0008s20820 (11)//POPTR_0268s00210 (11)//POPTR_0007s10540 (11)	scaffold_268:8096-8425(-) (11)//scaffold_7:10559405-10559734(+) (11)//scaffold_8:14796971-14797300(-) (11)//scaffold_9:885870-886201(+) (11)	POPTR_0022s00390 (7)//POPTR_0009s00770 (6)	NA	NA	AT3G51700.1	PIF1 helicase 	LOC_Os11g44830.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g077250.1	"Protein of unknown function DUF889, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.226.1.S1_at	A	A1TS	POPTR_0006s08710	POPTR_0006s08710 (11)	scaffold_6:6385173-6386325(-) (11)	NA	O80934	"Uncharacterized protein At2g37660, chloroplastic"	AT2G37660.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g60740.1	expressed protein	AC202568_1.1	NAD-dependent epimerase/dehydratase AC202568.9 6468-9775 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22608.1.A1_at	A	A1TS	POPTR_0008s18400	POPTR_0008s18400 (11)	scaffold_8:12367917-12368467(-) (11)	NA	Q9SS90	E3 ubiquitin-protein ligase RGLG1	AT3G01650.1	RING domain ligase1 	LOC_Os01g68060.1	"copine, putative, expressed"	Medtr3g102530.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22609.2.S1_a_at	A	A1TS	POPTR_0001s14110	POPTR_0001s14110 (11)	scaffold_1:11075373-11076130(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22629.1.A1_s_at	A	A1TS	POPTR_0010s11840	POPTR_0010s11840 (11)	scaffold_10:11977316-11977350(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22629.2.S1_at	A	A1TS	POPTR_0003s10150	POPTR_0003s10150 (11)	scaffold_3:11254119-11254658(-) (11)	NA	Q9C6S7	Probable methyltransferase PMT20	AT1G31850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr5g027150.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.22638.1.S1_at	A	A1TS	POPTR_0013s04080	POPTR_0013s04080 (9)	scaffold_13:2706509-2706888(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22649.2.S1_a_at	A	A1TS	POPTR_0004s21250	POPTR_0004s21250 (11)	scaffold_4:20452450-20452797(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.22649.3.A1_a_at	A	A2TS	POPTR_0004s21250	POPTR_0004s21250 (11)//POPTR_0004s21240 (10)	scaffold_4:20450727-20450870(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.2265.10.A1_a_at	A	A1TS	POPTR_0016s04490	POPTR_0016s04490 (11)	scaffold_16:2644549-2644856(-) (11)	NA	NA	NA	AT2G42110.1	unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g03630.1	expressed protein	Medtr7g111930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2265.9.A1_at	A	A1MS	POPTR_0016s04490	POPTR_0016s04490 (11)	scaffold_16:2644433-2644794(-) (11)	NA	NA	NA	AT2G42110.1	unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g03630.1	expressed protein	Medtr7g111930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22650.1.S1_at	A	A1TS	POPTR_0001s31440	POPTR_0001s31440 (10)	scaffold_1:29735316-29735963(-) (10)	NA	Q39962	Citrate-binding protein	NA	NA	LOC_Os12g07310.1	"citrate-binding protein precursor, putative, expressed"	Medtr3g144330.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22657.1.S1_at	A	A1TS	POPTR_0016s05490	POPTR_0016s05490 (10)	scaffold_16:3413499-3413873(+) (10)	NA	Q6NLQ6	Calcium-dependent protein kinase 32	AT3G57530.1	calcium-dependent protein kinase 32 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22659.1.S1_at	A	A1TS	POPTR_0018s09460	POPTR_0018s09460 (11)	scaffold_18:10347429-10348864(+) (11)	NA	P49098	Cytochrome b5	AT1G60660.1	cytochrome B5-like protein 	LOC_Os08g29669.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr4g023560.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.22660.1.A1_at	A	A1TS	POPTR_0006s26310	POPTR_0006s26310 (10)	scaffold_6:24545974-24546411(-) (10)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT4G32600.1	RING/U-box superfamily protein 	LOC_Os02g54624.1	"zinc finger family protein, putative, expressed"	Medtr1g012860.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22666.1.A1_s_at	A	A1TS	POPTR_0010s09500	POPTR_0010s09500 (11)	scaffold_10:10301276-10301423(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G02100.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g55050.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g012420.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22667.1.A1_at	A	A1TS	POPTR_0004s16690	POPTR_0004s16690 (11)	scaffold_4:17085545-17085696(+) (11)	NA	Q9SCV9	Beta-galactosidase 3	AT4G36360.2	beta-galactosidase 3 	LOC_Os03g06940.1	"beta-galactosidase, putative, expressed"	Medtr5g021090.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.22667.1.A1_s_at	A	A1TS	POPTR_0004s16690	POPTR_0004s16690 (11)	scaffold_4:17084621-17085715(+) (11)	NA	Q9SCV9	Beta-galactosidase 3	AT4G36360.2	beta-galactosidase 3 	LOC_Os03g06940.1	"beta-galactosidase, putative, expressed"	Medtr5g021090.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.22672.1.S1_at	A	A1TS	POPTR_0006s00500	POPTR_0006s00500 (11)	scaffold_6:254612-255101(-) (11)	NA	Q8R3G1	Nuclear inhibitor of protein phosphatase 1	AT5G47790.1	SMAD/FHA domain-containing protein  	LOC_Os08g23680.3	"FHA domain containing protein, putative, expressed"	Medtr2g032980.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22672.2.S1_at	A	A1MS	POPTR_0016s00540	POPTR_0016s00540 (9)	scaffold_16:185062-185408(-) (9)	NA	Q28147	Nuclear inhibitor of protein phosphatase 1	AT5G47790.1	SMAD/FHA domain-containing protein  	LOC_Os08g23680.3	"FHA domain containing protein, putative, expressed"	Medtr2g032980.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22673.1.S1_at	A	A1MS	POPTR_0002s17310	POPTR_0002s17310 (11)	scaffold_2:13061885-13062174(-) (11)	NA	Q9ZPY8	Transcription factor ABA-INDUCIBLE bHLH-TYPE	AT2G46510.1	ABA-inducible BHLH-type transcription factor 	LOC_Os01g13460.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.22673.2.A1_at	A	A1TS	POPTR_0014s09520	POPTR_0014s09520 (11)	scaffold_14:7066832-7067378(-) (11)	NA	Q9LNJ5	Transcription factor bHLH13	AT1G01260.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g13460.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.22678.1.S1_at	A	A1TS	POPTR_0005s21140	POPTR_0005s21140 (11)	scaffold_5:20271947-20272787(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22679.1.A1_at	A	A1TS	POPTR_0001s06880	POPTR_0001s06880 (11)	scaffold_1:5263455-5263976(+) (11)	NA	Q500W7	GPI mannosyltransferase 1	AT5G22130.1	mannosyltransferase family protein 	LOC_Os03g46750.1	"GPI mannosyltransferase 1, putative, expressed"	Medtr8g043980.1	"Mannosyltransferase, DXD "	GO:0006506|GPI anchor biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.22680.1.S1_at	A	A1MS	POPTR_0005s14110	POPTR_0005s14110 (11)	scaffold_5:11185021-11185371(+) (11)	NA	Q08747	Upstream activation factor subunit UAF30	AT1G49520.1	SWIB complex BAF60b domain-containing protein 	LOC_Os08g39310.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g017990.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22682.1.A1_at	A	A1TS	POPTR_0015s10290	POPTR_0015s10290 (11)	scaffold_15:11253334-11253505(+) (11)	NA	Q86TW2	Uncharacterized aarF domain-containing protein kinase 1	AT5G50330.1	Protein kinase superfamily protein 	LOC_Os01g67720.1	"ABC1 family domain containing protein, putative, expressed"	Medtr8g109830.1	"Protein kinase; Cytochrome c, monohaem "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22682.1.A1_s_at	A	A1TS	POPTR_0015s10290	POPTR_0015s10290 (11)	scaffold_15:11251950-11253233(+) (11)	NA	Q86TW2	Uncharacterized aarF domain-containing protein kinase 1	AT5G50330.1	Protein kinase superfamily protein 	LOC_Os01g67720.1	"ABC1 family domain containing protein, putative, expressed"	Medtr8g109830.1	"Protein kinase; Cytochrome c, monohaem "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22685.1.A1_s_at	A	A1TS	POPTR_0006s18580	POPTR_0006s18580 (11)	scaffold_6:17109157-17109582(-) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.2	"OsFBX331 - F-box domain containing protein, expressed"	AC233685_52.1	Cyclin-like F-box; F-box protein interaction domain AC233685.2 233595-232417 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22690.1.S1_at	A	A1TS	POPTR_0006s11930	POPTR_0006s11930 (10)	scaffold_6:9122330-9122848(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G03795.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr1g073800.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.22701.1.S1_at	A	A1MS	POPTR_0009s06350	POPTR_0009s06350 (9)	scaffold_9:6151477-6151898(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22704.1.A1_at	A	A1TS	POPTR_0005s05110	POPTR_0005s05110 (11)	scaffold_5:3400192-3400884(-) (11)	NA	O34598	Guanine deaminase	AT5G28050.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os03g61810.1	"tRNA-specific adenosine deaminase, putative, expressed"	Medtr8g133690.1	"CMP/dCMP deaminase, zinc-binding "	NA	GO:0016787|hydrolase activity||GO:0008270|zinc ion binding	NA
PtpAffx.22704.2.S1_at	A	A1TS	POPTR_0030s00460	POPTR_0030s00460 (10)	scaffold_30:198215-198933(-) (10)	NA	O34598	Guanine deaminase	AT5G28050.2	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os03g61810.1	"tRNA-specific adenosine deaminase, putative, expressed"	Medtr8g133690.1	"CMP/dCMP deaminase, zinc-binding "	NA	GO:0016787|hydrolase activity||GO:0008270|zinc ion binding	NA
PtpAffx.2271.1.S1_s_at	A	A1TA	POPTR_0018s10480	POPTR_0018s10480 (11)	scaffold_18:11386863-11387389(-) (11)//scaffold_18:11392623-11393147(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22714.1.S1_at	A	A1TS	POPTR_0001s31730	POPTR_0001s31730 (10)	scaffold_1:30128810-30128982(+) (10)	NA	Q6BQ20	Autophagy-related protein 13	AT3G18770.1	Autophagy-related protein 13 	LOC_Os11g06320.1	expressed protein	Medtr3g144100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22714.1.S1_s_at	A	A1TS	POPTR_0001s31730	POPTR_0001s31730 (11)	scaffold_1:30128635-30128818(+) (11)	NA	Q6BQ20	Autophagy-related protein 13	AT3G18770.1	Autophagy-related protein 13 	LOC_Os11g06320.1	expressed protein	Medtr3g144100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22716.1.S1_at	A	A1TS	POPTR_0012s10610	POPTR_0012s10610 (11)	scaffold_12:11333905-11334549(+) (11)	NA	B9IFI5	UPF0497 membrane protein 1	AT4G25040.1	Uncharacterised protein family (UPF0497) 	LOC_Os02g12760.1	"integral membrane protein, putative, expressed"	Medtr7g094340.2	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.2272.1.S1_a_at	A	A2TS	POPTR_0010s23100	POPTR_0010s23100 (11)//POPTR_0010s23110 (11)	scaffold_10:19776604-19776665(+) (11)//scaffold_10:19783249-19783310(+) (11)	NA	Q43052	Phenylalanine ammonia-lyase G2B	AT3G53260.1	phenylalanine ammonia-lyase 2 	LOC_Os02g41650.3	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
PtpAffx.2272.4.S1_a_at	A	A1TS	POPTR_0010s23100	POPTR_0010s23100 (11)	scaffold_10:19777009-19777123(+) (11)	POPTR_0010s23110 (8)	Q43052	Phenylalanine ammonia-lyase G2B	AT3G53260.1	phenylalanine ammonia-lyase 2 	LOC_Os02g41650.3	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
PtpAffx.22734.1.S1_s_at	A	A1TS	POPTR_0016s02120	POPTR_0016s02120 (11)	scaffold_16:1021772-1022212(-) (11)	NA	Q9SUN3	Probable UDP-arabinose 4-epimerase 3	AT4G20460.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g03570.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr4g137730.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.22736.1.S1_at	A	A1TS	POPTR_0002s10180	POPTR_0002s10180 (11)	scaffold_2:7305106-7306436(-) (11)	NA	NA	NA	AT4G09060.1	unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1); Has 8168 Blast hits to 6036 proteins in 601 species: Archae - 151; Bacteria - 570; Metazoa - 4684; Fungi - 544; Plants - 345; Viruses - 91; Other Eukaryotes - 1783 (source: NCBI BLink). 	LOC_Os02g58470.1	expressed protein	Medtr5g074000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22736.2.S1_a_at	A	A1TS	POPTR_0002s10180	POPTR_0002s10180 (11)	scaffold_2:7306450-7307576(-) (11)	NA	NA	NA	AT4G09060.1	unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1); Has 8168 Blast hits to 6036 proteins in 601 species: Archae - 151; Bacteria - 570; Metazoa - 4684; Fungi - 544; Plants - 345; Viruses - 91; Other Eukaryotes - 1783 (source: NCBI BLink). 	LOC_Os02g58470.1	expressed protein	Medtr5g074000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2274.2.A1_at	A	A1TA	POPTR_0007s03340	POPTR_0007s03340 (11)	scaffold_7:1939607-1940047(-) (11)	POPTR_0007s03360 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2275.1.S1_s_at	A	A1TS	POPTR_0001s08320	POPTR_0001s08320 (11)	scaffold_1:6347289-6347741(+) (11)	NA	O64635	Cytochrome P450 76C4	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.22761.1.A1_at	A	A1TS	POPTR_0006s14850	POPTR_0006s14850 (10)	scaffold_6:12281826-12283237(+) (10)	NA	Q9S7U9	Mitogen-activated protein kinase kinase 2	AT4G29810.1	MAP kinase kinase 2 	LOC_Os06g05520.1	"OsMKK1 - putative MAPKK based on amino acid sequence homology, expressed"	Medtr6g005140.1	Tyrosine protein kinase; Nuclear transport factor 2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.2279.1.S1_at	A	A1TS	POPTR_0001s26920	POPTR_0001s26920 (11)	scaffold_1:25911157-25911582(+) (11)	NA	Q3UX61	"N-alpha-acetyltransferase 11, NatA catalytic subunit"	AT5G13780.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os04g54330.3	"acetyltransferase, GNAT family, putative, expressed"	Medtr3g040890.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.22805.1.A1_s_at	A	A1TS	POPTR_0011s17270	POPTR_0011s17270 (11)	scaffold_11:18853402-18853603(-) (11)	NA	Q8W206	COP9 signalosome complex subunit 6a	AT5G56280.1	COP9 signalosome subunit 6A 	LOC_Os08g39070.1	"COP9 signalosome complex subunit 6a, putative, expressed"	Medtr5g089320.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2281.1.A1_a_at	A	A1TS	POPTR_0008s14090	POPTR_0008s14090 (11)	scaffold_8:9310238-9310418(+) (11)	NA	Q38884	Eukaryotic translation initiation factor 3 subunit I	AT2G46290.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g21660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g104760.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22811.1.A1_at	A	A1TS	POPTR_0009s02240	POPTR_0009s02240 (11)	scaffold_9:2956047-2956413(-) (11)	NA	NA	NA	AT5G22070.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g44580.3	"DNA binding protein, putative, expressed"	Medtr2g104790.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.22819.1.S1_at	A	A1TS	POPTR_0019s14760	POPTR_0019s14760 (10)	scaffold_19:15436600-15437253(+) (10)	NA	NA	NA	AT1G06950.1	translocon at the inner envelope membrane of chloroplasts 110 	LOC_Os10g35010.1	"ATTIC110/TIC110, putative, expressed"	Medtr5g082650.1	"chloroplast inner envelope protein, 110 kD, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22820.1.A1_at	A	A1TS	POPTR_0008s20930	POPTR_0008s20930 (9)	scaffold_8:14948744-14949211(-) (11)	NA	NA	NA	AT4G15563.1	unknown protein; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g30920.1	"OsFBX167 - F-box domain containing protein, expressed"	Medtr8g139650.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22821.1.S1_at	A	A1TS	POPTR_0005s03660	POPTR_0005s03660 (10)	scaffold_5:2444029-2444331(+) (10)	NA	Q75HV0	Cyclin-P3-1	AT3G05327.1	Cyclin family protein 	LOC_Os05g33040.3	"cyclin, putative, expressed"	AC202489_33.1	Cyclin-like AC202489.10 140272-141893 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22835.1.S1_s_at	A	A1MS	POPTR_0005s03360	POPTR_0005s03360 (11)	scaffold_5:2203994-2204409(-) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g011710.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.2284.1.S1_at	A	A1TS	POPTR_0005s26300	POPTR_0005s26300 (9)	scaffold_5:24366064-24366114(-) (9)	NA	Q9SYQ8	Receptor protein kinase CLAVATA1	AT1G75820.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g56270.2	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr4g096420.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.2284.1.S1_s_at	A	A1TS	POPTR_0005s26300	POPTR_0005s26300 (11)	scaffold_5:24366240-24366889(-) (11)	NA	Q9SYQ8	Receptor protein kinase CLAVATA1	AT1G75820.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g56270.2	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr4g096420.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.22847.2.A1_a_at	A	A1TS	POPTR_0001s15830	POPTR_0001s15830 (11)	scaffold_1:12667999-12668444(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22848.1.S1_at	A	A1TS	POPTR_0004s01860	POPTR_0004s01860 (9)	scaffold_4:1137942-1138200(+) (9)	NA	O48928	Cytochrome P450 77A3	AT1G11600.1	"cytochrome P450, family 77, subfamily B, polypeptide 1 "	LOC_Os06g46680.1	"cytochrome P450, putative, expressed"	Medtr8g146430.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.22849.1.S1_at	A	A1TS	POPTR_0004s04720	POPTR_0004s04720 (11)	scaffold_4:3468189-3468377(-) (11)	NA	Q9LW49	Ethylene-responsive transcription factor 4	AT5G44210.1	erf domain protein 9 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr2g017860.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.22851.1.S1_at	A	A1TS	POPTR_0009s08590	POPTR_0009s08590 (10)	scaffold_9:7811600-7812124(-) (10)	NA	Q12296	Protein MAM3	AT2G14520.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g47120.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2286.3.S1_a_at	A	A1TS	POPTR_0700s00200	POPTR_0700s00200 (11)	scaffold_11:16818716-16822300(-) (9)//scaffold_700:1154-1652(+) (11)	POPTR_0011s14400 (8)	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2286.4.S1_a_at	A	A2TS	POPTR_0011s14400	POPTR_0700s00200 (11)//POPTR_0011s14400 (11)	scaffold_11:16818632-16818675(-) (11)//scaffold_11:16822227-16822270(-) (11)//scaffold_700:1419-1462(+) (11)//scaffold_700:10026-10069(+) (11)//scaffold_878:1997-2040(+) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G17170.1	glutathione S-transferase TAU 24 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22863.2.S1_a_at	A	A1TS	POPTR_0015s08420	POPTR_0015s08420 (11)	scaffold_12:8911343-8914973(-) (9)//scaffold_15:9696511-9699648(-) (11)	NA	Q6Z808	Rac-like GTP-binding protein 3	AT3G48040.1	RHO-related protein from plants 10 	LOC_Os02g50860.1	"ras-related protein, putative, expressed"	Medtr6g099230.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.22863.2.S1_at	A	A1TS	POPTR_0015s08420	POPTR_0015s08420 (9)	scaffold_15:9694903-9699636(-) (9)	NA	Q6Z808	Rac-like GTP-binding protein 3	AT3G48040.1	RHO-related protein from plants 10 	LOC_Os02g50860.1	"ras-related protein, putative, expressed"	Medtr6g099230.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.22864.1.A1_at	A	A1TS	POPTR_0015s13790	POPTR_0015s13790 (11)	scaffold_15:13577355-13577797(+) (11)	NA	A5A7I7	Calcium-dependent protein kinase 4	AT1G12580.1	phosphoenolpyruvate carboxylase-related kinase 1 	LOC_Os06g03682.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g129530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22865.1.S1_at	A	A1TS	POPTR_0016s12140	POPTR_0016s12140 (9)	scaffold_16:11446094-11446629(-) (9)	NA	Q67BJ4	Lactosylceramide 4-alpha-galactosyltransferase	AT3G09020.1	"alpha 1,4-glycosyltransferase family protein "	LOC_Os04g44740.1	"glycosyltransferase sugar-binding region containing DXD motif, putative, expressed"	Medtr3g024730.1	"Glycosyltransferase sugar-binding region containing DXD motif; Alpha 1,4-glycosyltransferase conserved region "	NA	GO:0008378|galactosyltransferase activity	GO:0005795|Golgi stack
PtpAffx.22869.1.S1_at	A	A1TS	POPTR_0005s17100	POPTR_0005s17100 (11)	scaffold_5:14215638-14216619(+) (11)	NA	Q43125	Cryptochrome-1	AT4G08920.1	cryptochrome 1 	LOC_Os04g37920.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g072760.2	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.22869.2.A1_a_at	A	A2TS	POPTR_0002s09730	POPTR_0002s09730 (11)//POPTR_0005s17100 (11)	scaffold_2:6975502-6975796(+) (11)//scaffold_5:14214822-14215116(+) (11)	NA	Q43125	Cryptochrome-1	AT4G08920.1	cryptochrome 1 	LOC_Os04g37920.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g072760.2	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.22869.2.A1_at	A	A1MS	POPTR_0005s17100	POPTR_0005s17100 (11)	scaffold_5:14214844-14215053(+) (11)	NA	Q43125	Cryptochrome-1	AT4G08920.1	cryptochrome 1 	LOC_Os04g37920.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g072760.2	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.22869.3.A1_at	A	A1MS	POPTR_0002s09730	POPTR_0002s09730 (11)	scaffold_2:6975579-6975727(+) (11)	NA	Q43125	Cryptochrome-1	AT4G08920.1	cryptochrome 1 	LOC_Os04g37920.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g072760.2	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.2288.1.S1_at	A	A1TS	POPTR_0001s29350	POPTR_0001s29350 (11)	scaffold_1:28069780-28070082(+) (11)	NA	Q07078	Heat shock protein 81-3	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.2288.1.S1_x_at	A	A1TS	POPTR_0001s29350	POPTR_0001s29350 (11)	scaffold_1:28069665-28070114(+) (11)	NA	Q07078	Heat shock protein 81-3	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.2288.2.A1_s_at	A	A1TS	POPTR_0006s00470	POPTR_0006s00470 (11)	scaffold_6:229683-229999(+) (11)	NA	Q07078	Heat shock protein 81-3	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.2288.3.A1_at	A	A1TS	POPTR_0016s00510	POPTR_0016s00510 (9)	scaffold_16:165867-166129(+) (9)	NA	Q07078	Heat shock protein 81-3	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.22897.1.A1_at	A	A1TS	POPTR_0010s23650	POPTR_0010s23650 (11)	scaffold_10:20176109-20176369(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G04410.1	NAC domain containing protein 2 	LOC_Os05g35170.2	"no apical meristem protein, putative, expressed"	Medtr8g073410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.22899.1.A1_s_at	A	A1TS	POPTR_0001s02390	POPTR_0001s02390 (9)	scaffold_1:1814031-1814187(-) (9)	NA	NA	NA	AT4G17900.1	PLATZ transcription factor family protein 	LOC_Os02g46610.1	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22907.1.A1_at	A	A1TS	POPTR_0009s16910	POPTR_0009s16910 (11)	scaffold_9:12763265-12763641(-) (11)	NA	Q4V8B1	Proton-coupled amino acid transporter 3	AT4G38250.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47780.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g024300.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22915.1.A1_at	A	A1TS	POPTR_0001s25700	POPTR_0001s25700 (11)	scaffold_1:24746759-24747177(+) (11)	NA	NA	NA	AT2G29660.1	zinc finger (C2H2 type) family protein 	LOC_Os03g15790.1	"ZOS3-08 - C2H2 zinc finger protein, expressed"	AC233571_15.1	"Zinc finger, C2H2-type AC233571.2 69860-68176 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.22915.2.S1_at	A	A1TS	POPTR_0009s04850	POPTR_0009s04850 (11)	scaffold_9:5088072-5088493(+) (11)	NA	NA	NA	AT2G29660.1	zinc finger (C2H2 type) family protein 	LOC_Os03g15790.1	"ZOS3-08 - C2H2 zinc finger protein, expressed"	AC233571_15.1	"Zinc finger, C2H2-type AC233571.2 69860-68176 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.22916.1.A1_at	A	A1TS	POPTR_0010s21090	POPTR_0010s21090 (11)	scaffold_10:18502134-18502605(-) (11)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os05g02020.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22923.1.A1_s_at	A	A1TS	POPTR_0008s18070	POPTR_0008s18070 (11)	scaffold_8:12113092-12113369(+) (11)	NA	Q9FI40	BAHD acyltransferase At5g47980	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g10420.1	"transferase family domain containing protein, expressed"	Medtr5g092230.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.22926.1.A1_at	A	A1TS	POPTR_0019s11190	POPTR_0019s11190 (11)	scaffold_19:12571091-12571777(+) (11)	NA	Q94F09	Protein disulfide-isomerase 5-2	AT1G35620.1	PDI-like 5-2 	LOC_Os04g35290.1	"OsPDIL5-2  protein disulfide isomerase PDIL5-2, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.2294.1.S1_at	A	A1TS	POPTR_0002s19960	POPTR_0002s19960 (10)	scaffold_2:15890199-15891618(-) (10)	NA	Q8KPU9	Arginyl-tRNA synthetase	AT4G26300.1	"Arginyl-tRNA synthetase, class Ic "	LOC_Os05g07030.1	"arginyl-tRNA synthetase, putative, expressed"	Medtr3g128230.1	DALR anticodon binding; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006420|arginyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004814|arginine-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.2295.1.A1_at	A	A1TS	POPTR_0007s10170	POPTR_0007s10170 (11)	scaffold_7:9892332-9892743(-) (11)	NA	Q8NBP0	Tetratricopeptide repeat protein 13	AT4G37460.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g02300.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr5g016180.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22955.1.A1_at	A	A1TS	POPTR_0004s00300	POPTR_0004s00300 (11)	scaffold_4:78710-79136(+) (11)	NA	NA	NA	AT1G62420.1	Protein of unknown function (DUF506)  	LOC_Os01g65740.1	plant-specific domain TIGR01615 family protein	Medtr8g147620.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22961.2.S1_a_at	A	A1TS	POPTR_0014s10580	POPTR_0014s10580 (11)	scaffold_14:7880937-7881712(+) (11)	NA	Q9NZ63	Uncharacterized protein C9orf78	AT1G02330.1	CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). 	LOC_Os03g25720.1	"GA20734-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22961.2.S1_at	A	A1TS	POPTR_0014s10580	POPTR_0014s10580 (11)	scaffold_14:7880414-7881660(+) (11)	NA	Q9NZ63	Uncharacterized protein C9orf78	AT1G02330.1	CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). 	LOC_Os03g25720.1	"GA20734-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22961.3.A1_a_at	A	A1TS	POPTR_0014s10580	POPTR_0014s10580 (11)	scaffold_14:7882060-7882683(+) (11)	NA	Q9NZ63	Uncharacterized protein C9orf78	AT1G02330.1	CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). 	LOC_Os03g25720.1	"GA20734-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22977.1.A1_at	A	A1MS	POPTR_0010s16720	POPTR_0010s16720 (11)	scaffold_10:15583255-15583731(-) (11)	NA	NA	NA	AT1G26580.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g31230.2	"MYB family transcription factor, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22982.1.A1_at	A	A1TS	POPTR_0002s11500	POPTR_0002s11500 (9)	scaffold_2:8549238-8549446(-) (9)	NA	Q9JM15	Sodium-coupled neutral amino acid transporter 1	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22996.1.A1_at	A	A1TS	POPTR_0003s04970	POPTR_0003s04970 (11)	scaffold_3:6079760-6080138(+) (11)	NA	NA	NA	AT3G16200.1	unknown protein; Has 97 Blast hits to 97 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). 	LOC_Os01g31220.1	expressed protein	Medtr2g122550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22999.1.A1_at	A	A1TS	POPTR_0007s10490	POPTR_0007s10490 (11)	scaffold_7:10441275-10441821(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr5g016440.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23.1.A1_at	A	A1MS	POPTR_0005s15460	POPTR_0005s15460 (11)	scaffold_5:12133230-12133718(+) (11)	NA	Q39265	Zinc finger protein 6	AT1G67030.1	zinc finger protein 6 	LOC_Os01g32920.1	"ZOS1-08 - C2H2 zinc finger protein, expressed"	Medtr5g067950.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.230.1.S1_at	A	A1TS	POPTR_0005s11550	POPTR_0005s11550 (9)	scaffold_5:8379937-8380449(+) (9)	NA	Q9LT23	Transcription factor bHLH121	AT3G19860.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g23823.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr4g111220.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.23005.1.A1_s_at	A	A1TS	POPTR_0004s04440	POPTR_0004s04440 (11)	scaffold_4:3203931-3206030(+) (11)	NA	P56820	Eukaryotic translation initiation factor 3 subunit D	AT4G20980.4	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 	LOC_Os05g49150.1	"eukaryotic translation initiation factor 3 subunit D, putative, expressed"	Medtr2g017440.1	"Eukaryotic translation initiation factor 3, subunit 7 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.23009.1.A1_s_at	A	A1TS	POPTR_0001s10040	POPTR_0001s10040 (11)	scaffold_1:7770212-7771189(+) (11)	NA	Q9SH59	Reticulon-like protein B3	AT1G64090.1	Reticulan like protein B3 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.23017.1.A1_at	A	A1TS	POPTR_0008s04630	POPTR_0008s04630 (11)	scaffold_8:2653502-2654009(+) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g120700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.23037.1.A1_at	A	A1TS	POPTR_0009s11830	POPTR_0009s11830 (11)	scaffold_9:9741397-9742353(-) (11)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr3g159470.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.23043.1.S1_at	A	A1TS	POPTR_0013s04130	POPTR_0013s04130 (11)	scaffold_13:2758284-2758855(+) (11)	NA	NA	NA	AT3G04590.2	AT hook motif DNA-binding family protein 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr1g093350.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23050.1.A1_at	A	A1TS	POPTR_0008s06270	POPTR_0008s06270 (11)	scaffold_8:3714352-3714706(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os07g30620.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g033170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23053.1.A1_s_at	A	A1TS	POPTR_0008s03880	POPTR_0008s03880 (11)	scaffold_8:2125304-2125854(+) (11)	NA	O82632	GATA transcription factor 9	AT4G32890.1	GATA transcription factor 9 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr1g120760.2	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.23061.1.A1_s_at	A	A1TS	POPTR_0003s08220	POPTR_0003s08220 (11)	scaffold_3:9631628-9631731(-) (11)	NA	NA	NA	AT4G17070.1	peptidyl-prolyl cis-trans isomerases 	LOC_Os03g01090.1	"peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed"	Medtr5g013700.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.23061.2.A1_at	A	A1TS	POPTR_0003s03180	POPTR_0003s03180 (11)	scaffold_3:3597915-3598700(-) (11)	NA	NA	NA	AT4G17070.1	peptidyl-prolyl cis-trans isomerases 	LOC_Os03g01090.1	"peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed"	Medtr5g013700.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.23077.1.S1_at	A	A1TS	POPTR_0005s16690	POPTR_0005s16690 (11)	scaffold_5:13716471-13716794(+) (11)	NA	Q8H1E4	Ethylene-responsive transcription factor RAP2-4	AT1G78080.1	related to AP2 4 	LOC_Os03g09170.1	"ethylene-responsive transcription factor, putative, expressed"	CU651566_18.1	Pathogenesis-related transcriptional factor and ERF CU651566.9 95071-96871 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.23095.1.S1_at	A	A1TS	POPTR_0010s13610	POPTR_0010s13610 (11)	scaffold_10:13419196-13421034(-) (11)	NA	Q84L31	Putative DNA repair protein RAD23-3	AT3G02540.1	Rad23 UV excision repair protein family 	LOC_Os09g24200.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.231.1.S1_at	A	A1TS	POPTR_0014s04120	POPTR_0014s04120 (11)	scaffold_14:3276090-3276517(-) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G75090.1	DNA glycosylase superfamily protein 	LOC_Os06g44050.1	"methyladenine glycosylase, putative, expressed"	Medtr8g145370.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.231.2.S1_a_at	A	A2TS	POPTR_0002s13490	POPTR_0002s13490 (11)//POPTR_0014s04120 (11)	scaffold_14:3276515-3277230(-) (11)//scaffold_2:10014709-10015457(-) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G75090.1	DNA glycosylase superfamily protein 	LOC_Os03g10220.1	"methyladenine glycosylase, putative"	Medtr8g145370.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.2311.1.S1_s_at	A	A1TS	POPTR_0009s07710	POPTR_0009s07710 (11)	scaffold_9:7135082-7135471(-) (11)	NA	P49078	Asparagine synthetase [glutamine-hydrolyzing]	AT3G47340.1	glutamine-dependent asparagine synthase 1 	LOC_Os06g15420.1	"asparagine synthetase, putative, expressed"	Medtr5g079660.1	Asparagine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006529|asparagine biosynthetic process	GO:0004066|asparagine synthase (glutamine-hydrolyzing) activity	NA
PtpAffx.2311.2.A1_at	A	A1TS	POPTR_0001s28500	POPTR_0001s28500 (11)	scaffold_1:27253061-27253267(-) (11)	NA	P49078	Asparagine synthetase [glutamine-hydrolyzing]	AT3G47340.1	glutamine-dependent asparagine synthase 1 	LOC_Os06g15420.1	"asparagine synthetase, putative, expressed"	Medtr5g079660.1	Asparagine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006529|asparagine biosynthetic process	GO:0004066|asparagine synthase (glutamine-hydrolyzing) activity	NA
PtpAffx.2315.1.S1_at	A	A1TS	POPTR_0014s17050	POPTR_0014s17050 (11)	scaffold_14:13223296-13223719(-) (11)	NA	Q4KLL4	Transmembrane 9 superfamily member 4	AT4G12650.1	Endomembrane protein 70 protein family 	LOC_Os08g38820.2	"transmembrane 9 superfamily member, putative, expressed"	Medtr3g107100.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.23158.1.S1_at	A	A1TS	POPTR_0014s08410	POPTR_0014s08410 (11)	scaffold_14:6256967-6257440(-) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT4G00300.2	fringe-related protein 	LOC_Os03g03290.1	"receptor-like protein kinase At3g46290 precursor, putative, expressed"	Medtr7g087930.1	"Probable receptor-like protein kinase At3g46290 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23169.1.A1_at	A	A1TS	POPTR_0001s19100	POPTR_0001s19100 (11)	scaffold_1:16474021-16474575(+) (11)	NA	Q9LIG0	Clavaminate synthase-like protein At3g21360	AT3G21360.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g09430.1	expressed protein	Medtr2g122100.1	Taurine catabolism dioxygenase TauD/TfdA 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.23175.1.S1_at	A	A1TS	POPTR_0014s02410	POPTR_0014s02410 (10)	scaffold_14:2011094-2011399(-) (10)	NA	P43297	Cysteine proteinase RD21a	AT5G43060.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.2318.1.S1_s_at	A	A1TS	POPTR_0009s13530	POPTR_0009s13530 (11)	scaffold_9:10741265-10741678(-) (11)	NA	NA	NA	AT4G34950.1	Major facilitator superfamily protein 	LOC_Os09g36600.1	"nodulin, putative, expressed"	Medtr5g022310.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2320.1.S1_at	A	A1TS	POPTR_0001s11350	POPTR_0001s11350 (10)	scaffold_1:8798684-8799167(+) (10)	NA	P13254	Methionine gamma-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.23209.1.S1_at	A	A1TS	POPTR_0004s00290	POPTR_0004s00290 (10)	scaffold_4:72351-72844(-) (10)	NA	Q9D099	Alkaline ceramidase 3	AT4G22330.1	Alkaline phytoceramidase (aPHC) 	LOC_Os03g49180.1	"alkaline phytoceramidase, putative, expressed"	Medtr2g029600.1	Alkaline phytoceramidase 	GO:0006672|ceramide metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0000139|Golgi membrane||GO:0071212|subsynaptic reticulum
PtpAffx.23262.1.S1_at	A	A1TS	POPTR_0010s06550	POPTR_0010s06550 (11)	scaffold_10:7876800-7877573(-) (11)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23262.2.S1_at	A	A1MS	POPTR_0008s17950	POPTR_0008s17950 (9)	scaffold_8:12047429-12047545(+) (9)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23267.1.A1_at	A	A1TS	POPTR_0019s12530	POPTR_0019s12530 (11)	scaffold_19:13576487-13577176(+) (11)	NA	Q9LT67	Transcription factor bHLH113	AT1G05710.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr4g128550.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23271.1.S1_at	A	A1TS	POPTR_0002s05780	POPTR_0002s05780 (11)	scaffold_2:3791886-3792397(-) (11)	NA	Q9SSU8	"Phytoene synthase, chloroplastic"	AT5G17230.2	PHYTOENE SYNTHASE 	LOC_Os06g51290.3	"phytoene synthase, chloroplast precursor, putative, expressed"	Medtr5g084540.1	Squalene/phytoene synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.23271.2.S1_a_at	A	A2TS	POPTR_0002s05780	POPTR_0005s22740 (11)//POPTR_0002s05780 (11)	scaffold_2:3792418-3792530(-) (11)//scaffold_5:21641518-21641630(+) (11)	NA	Q9SSU8	"Phytoene synthase, chloroplastic"	AT5G17230.2	PHYTOENE SYNTHASE 	LOC_Os06g51290.3	"phytoene synthase, chloroplast precursor, putative, expressed"	Medtr5g084540.1	Squalene/phytoene synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.23271.2.S1_at	A	A1TS	POPTR_0005s22740	POPTR_0005s22740 (11)	scaffold_5:21641295-21641860(+) (11)	NA	Q9SSU8	"Phytoene synthase, chloroplastic"	AT5G17230.2	PHYTOENE SYNTHASE 	LOC_Os06g51290.3	"phytoene synthase, chloroplast precursor, putative, expressed"	Medtr5g084540.1	Squalene/phytoene synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.23271.3.S1_a_at	A	A1TS	POPTR_0002s05780	POPTR_0002s05780 (11)	scaffold_2:3793148-3794837(-) (11)	NA	Q9SSU8	"Phytoene synthase, chloroplastic"	AT5G17230.2	PHYTOENE SYNTHASE 	LOC_Os06g51290.3	"phytoene synthase, chloroplast precursor, putative, expressed"	Medtr5g084540.1	Squalene/phytoene synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.2329.1.S1_at	A	A1TS	POPTR_0006s24220	POPTR_0006s24220 (11)	scaffold_6:22887823-22888278(+) (11)	NA	Q40471	Eukaryotic initiation factor 4A-9	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os06g48750.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.2332.1.S1_at	A	A1TS	POPTR_0005s25120	POPTR_0005s25120 (11)	scaffold_5:23451721-23452258(+) (11)	NA	Q9FJZ3	"Mannan endo-1,4-beta-mannosidase 7"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr5g020810.1	"Glycoside hydrolase, catalytic core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23321.1.S1_a_at	A	A3TS	POPTR_0002s14160	POPTR_0014s05400 (11)//POPTR_0014s05350 (11)//POPTR_0002s14160 (11)	scaffold_14:4023767-4023831(-) (11)//scaffold_14:4053851-4053915(-) (11)//scaffold_2:10499973-10500037(-) (11)	NA	Q5XKA2	"TIM21-like protein, mitochondrial"	AT4G00026.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os03g14890.1	"AGAP008572-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23321.2.S1_a_at	A	A2TS	POPTR_0014s05350	POPTR_0014s05400 (11)//POPTR_0014s05350 (11)	scaffold_14:4023189-4023427(-) (11)//scaffold_14:4053273-4053511(-) (11)	NA	Q5XKA2	"TIM21-like protein, mitochondrial"	AT4G00026.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os03g14890.1	"AGAP008572-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23324.1.S1_at	A	A1TS	POPTR_0001s31680	POPTR_0001s31680 (11)	scaffold_1:30043446-30044358(+) (10)	NA	Q5M755	"Probable plastid-lipid-associated protein 7, chloroplastic"	AT5G09820.2	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g34460.1	"PAP fibrillin family domain containing protein, expressed"	Medtr4g141770.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.23326.1.S1_a_at	A	A1TS	POPTR_0018s11210	POPTR_0018s11210 (11)	scaffold_18:12014735-12015298(+) (11)	NA	Q949Q7	Serine carboxypeptidase-like 29	AT4G30810.1	serine carboxypeptidase-like 29 	LOC_Os06g08720.2	"OsSCP32 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g080830.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.23330.1.S1_at	A	A1TS	POPTR_0001s39130	POPTR_0001s39130 (11)	scaffold_1:38345025-38345648(-) (11)	NA	Q39224	Protein SRG1	AT1G17020.1	senescence-related gene 1 	LOC_Os01g25010.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235677_19.1	2OG-Fe(II) oxygenase AC235677.1 84535-88047 E EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.2334.2.A1_a_at	A	A1TS	POPTR_0018s11060	POPTR_0018s11060 (11)	scaffold_18:11868134-11868677(+) (11)	NA	Q9LMU0	Putative GDP-L-fucose synthase 2	AT1G17890.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g44270.1	"synthase, putative, expressed"	Medtr7g130220.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.23356.1.S1_at	A	A1TS	POPTR_0014s13860	POPTR_0014s13860 (10)	scaffold_14:10134153-10134369(-) (11)	NA	Q8L4B0	Probable galacturonosyltransferase 15	AT3G58790.1	galacturonosyltransferase 15 	LOC_Os12g38930.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g096780.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.23367.1.A1_at	A	A1TS	POPTR_0008s22590	POPTR_0008s22590 (11)	scaffold_8:17216100-17216534(+) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.23373.1.A1_a_at	A	A2TS	POPTR_0005s18300	POPTR_0005s18300 (11)//POPTR_0007s10870 (10)	scaffold_5:16442768-16443623(+) (11)//scaffold_7:11063105-11063651(+) (10)	NA	Q55G10	Nicotinate phosphoribosyltransferase	AT2G23420.1	nicotinate phosphoribosyltransferase 2 	LOC_Os03g62110.2	"nicotinate phosphoribosyltransferase family domain containing protein, expressed"	Medtr5g016960.1	Nicotinate phosphoribosyltransferase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23373.2.A1_a_at	A	A1TS	POPTR_0005s18300	POPTR_0005s18300 (11)	scaffold_5:16438239-16439667(+) (11)	NA	Q55G10	Nicotinate phosphoribosyltransferase	AT2G23420.1	nicotinate phosphoribosyltransferase 2 	LOC_Os03g62110.2	"nicotinate phosphoribosyltransferase family domain containing protein, expressed"	Medtr5g016960.1	Nicotinate phosphoribosyltransferase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23373.3.A1_at	A	A1TS	POPTR_0007s10870	POPTR_0007s10870 (11)	scaffold_7:11062351-11063833(+) (11)	NA	Q55G10	Nicotinate phosphoribosyltransferase	AT2G23420.1	nicotinate phosphoribosyltransferase 2 	LOC_Os03g62110.2	"nicotinate phosphoribosyltransferase family domain containing protein, expressed"	Medtr5g016960.1	Nicotinate phosphoribosyltransferase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2338.1.A1_at	A	A1TS	POPTR_0019s11790	POPTR_0019s11790 (11)	scaffold_19:12998644-12999517(-) (11)	NA	Q54BP6	Exocyst complex component 3	AT1G71820.1	SEC6 	LOC_Os02g51430.1	"SEC6, putative, expressed"	Medtr4g025480.1	Exocyst complex component Sec6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23392.1.S1_at	A	A1TS	POPTR_0009s04630	POPTR_0009s04630 (11)	scaffold_9:4924824-4933104(+) (11)	NA	Q6Z358	Zinc finger CCCH domain-containing protein 49	AT1G07360.1	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os07g18050.1	"RNA-binding motif protein, putative, expressed"	Medtr3g111410.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.23392.2.S1_a_at	A	A2TS	POPTR_0009s04610	POPTR_0009s04630 (11)//POPTR_0009s04610 (11)	scaffold_9:4924171-4924459(+) (11)//scaffold_9:4932239-4932527(+) (11)	NA	Q6Z358	Zinc finger CCCH domain-containing protein 49	AT1G07360.1	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os07g18050.1	"RNA-binding motif protein, putative, expressed"	Medtr3g111410.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.23401.1.S1_at	A	A1TS	POPTR_0010s18530	POPTR_0010s18530 (9)	scaffold_10:16738351-16740199(+) (9)	NA	Q6WAU0	(+)-pulegone reductase	AT1G65560.1	Zinc-binding dehydrogenase family protein 	LOC_Os01g66720.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.23427.1.S1_at	A	A2TS	POPTR_1996s00210	POPTR_1996s00210 (11)//POPTR_0008s17500 (10)	scaffold_1996:2792-2858(-) (11)//scaffold_8:11767460-11767514(-) (10)	NA	Q03662	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os05g34150.1	"glutathione S-transferase, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23427.1.S1_s_at	A	A2TS	POPTR_0008s17500	POPTR_1996s00210 (11)//POPTR_0008s17500 (11)	scaffold_1996:2601-3049(-) (11)//scaffold_8:11767266-11767717(-) (11)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2343.1.A1_at	A	A1TS	POPTR_0003s02970	POPTR_0003s02970 (9)	scaffold_3:3194444-3196420(-) (9)	NA	Q9YGP5	RNA-binding protein with multiple splicing	AT3G13700.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g05800.2	"RNA recognition motif containing protein, putative, expressed"	Medtr5g016600.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.23456.1.S1_at	A	A2TS	POPTR_0005s21080	POPTR_0005s21080 (11)//POPTR_0005s21070 (9)	scaffold_5:20198643-20199217(+) (11)//scaffold_5:20212440-20213013(+) (11)	NA	P16273	Pathogen-related protein	AT1G78780.2	pathogenesis-related family protein 	LOC_Os01g14590.1	"pathogen-related protein, putative, expressed"	Medtr8g068150.1	"Pathogen-related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23461.1.A1_at	A	A1TS	POPTR_0014s18730	POPTR_0014s18730 (10)	scaffold_14:16108458-16108824(-) (10)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.23468.1.S1_at	A	A1TS	POPTR_0005s14550	POPTR_0005s14550 (11)	scaffold_5:11600520-11602255(+) (11)	NA	Q8LE52	"Glutathione S-transferase DHAR3, chloroplastic"	AT5G16710.1	dehydroascorbate reductase 1 	LOC_Os06g12630.2	"glutathione S-transferase, N-terminal domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2347.1.S1_a_at	A	A2TS	POPTR_0008s14550	POPTR_0010s10560 (11)//POPTR_0008s14550 (11)	scaffold_10:11063895-11065959(-) (11)//scaffold_8:9651994-9654549(+) (11)	NA	Q6PBA2	Protein LSM12 homolog A	AT1G24050.1	"RNA-processing, Lsm domain "	LOC_Os02g50830.1	expressed protein	Medtr8g073620.1	"Protein LSM12 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2347.1.S1_at	A	A1TS	POPTR_0010s10560	POPTR_0010s10560 (11)	scaffold_10:11063614-11064131(-) (11)	NA	Q6PBA2	Protein LSM12 homolog A	AT1G24050.1	"RNA-processing, Lsm domain "	LOC_Os02g50830.1	expressed protein	Medtr8g073620.1	"Protein LSM12 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2347.2.S1_at	A	A1TS	POPTR_0008s14550	POPTR_0008s14550 (11)	scaffold_8:9651969-9654814(+) (11)	NA	Q6PBA2	Protein LSM12 homolog A	AT1G24050.1	"RNA-processing, Lsm domain "	LOC_Os02g50830.1	expressed protein	Medtr8g073620.1	"Protein LSM12 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23509.1.S1_a_at	A	A1TS	POPTR_0011s12640	POPTR_0011s12640 (9)	scaffold_11:15329257-15329292(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2352.1.A1_at	A	A1TS	POPTR_0017s14110	POPTR_0017s14110 (11)	scaffold_17:14282531-14283628(-) (11)	NA	Q8K4H1	Probable arylformamidase	AT5G15860.1	prenylcysteine methylesterase 	LOC_Os05g50170.2	"ATPCME, putative, expressed"	AC233657_30.1	"Carboxylesterase, type B AC233657.1 159050-155204 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23528.1.S1_at	A	A1TS	POPTR_0019s08950	POPTR_0019s08950 (11)	scaffold_19:10520123-10522452(+) (11)	NA	Q9ASX5	"Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic"	AT5G05200.1	Protein kinase superfamily protein 	LOC_Os07g12530.1	"ABC1 family domain containing protein, putative, expressed"	Medtr5g076860.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23537.1.S1_at	A	A1TS	POPTR_0006s11400	POPTR_0006s11400 (11)	scaffold_6:8629665-8629886(-) (11)	NA	P35493	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase"	AT3G08590.2	"Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "	LOC_Os01g60190.2	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed"	Medtr7g081000.1	"Alkaline phosphatase; Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "	GO:0044282|small molecule catabolic process||GO:0044275|cellular carbohydrate catabolic process||GO:0006007|glucose catabolic process||GO:0044281|small molecule metabolic process	GO:0004619|phosphoglycerate mutase activity||GO:0030145|manganese ion binding	GO:0005737|cytoplasm
PtpAffx.23537.1.S1_s_at	A	A1TS	POPTR_0006s11400	POPTR_0006s11400 (11)	scaffold_6:8628650-8629711(-) (11)	NA	P35493	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase"	AT3G08590.2	"Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "	LOC_Os01g60190.2	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed"	Medtr7g081000.1	"Alkaline phosphatase; Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "	GO:0044282|small molecule catabolic process||GO:0044275|cellular carbohydrate catabolic process||GO:0006007|glucose catabolic process||GO:0044281|small molecule metabolic process	GO:0004619|phosphoglycerate mutase activity||GO:0030145|manganese ion binding	GO:0005737|cytoplasm
PtpAffx.23537.2.A1_a_at	A	A1TS	POPTR_0013s12900	POPTR_0013s12900 (11)	scaffold_13:13520754-13520832(+) (11)	NA	O49858	Cytochrome P450 82A3	AT3G25180.1	"cytochrome P450, family 82, subfamily G, polypeptide 1 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr6g009230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.23537.2.A1_at	A	A1TS	POPTR_0013s12900	POPTR_0013s12900 (10)	scaffold_13:13520659-13521090(+) (10)	NA	O49858	Cytochrome P450 82A3	AT3G25180.1	"cytochrome P450, family 82, subfamily G, polypeptide 1 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr6g009230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.23537.3.A1_a_at	A	A1TS	POPTR_0013s12900	POPTR_0013s12900 (11)	scaffold_13:13519451-13519516(+) (11)	NA	O49858	Cytochrome P450 82A3	AT3G25180.1	"cytochrome P450, family 82, subfamily G, polypeptide 1 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr6g009230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.23537.3.A1_at	A	A1MS	POPTR_0013s12900	POPTR_0013s12900 (10)	scaffold_13:13519235-13519731(+) (10)	NA	O49858	Cytochrome P450 82A3	AT3G25180.1	"cytochrome P450, family 82, subfamily G, polypeptide 1 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr6g009230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.23558.1.S1_at	A	A2TS	POPTR_0011s15350	POPTR_0011s16710 (10)//POPTR_0011s15350 (10)	scaffold_11:17461438-17462133(+) (10)//scaffold_11:18493902-18494599(+) (10)	NA	Q96330	Flavonol synthase/flavanone 3-hydroxylase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.23562.1.S1_at	A	A1TS	POPTR_0008s08730	POPTR_0008s08730 (10)	scaffold_8:5386377-5386411(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23563.1.S1_at	A	A1TS	POPTR_0002s05980	POPTR_0002s05980 (11)	scaffold_2:3960755-3961312(+) (11)	NA	NA	NA	AT1G06500.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g14420.1	"RWP-RK domain-containing protein, putative, expressed"	Medtr3g061700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2357.1.S1_at	A	A1TS	POPTR_0019s14760	POPTR_0019s14760 (11)	scaffold_19:15435955-15436377(+) (11)	POPTR_0013s15040 (8)	NA	NA	AT1G06950.1	translocon at the inner envelope membrane of chloroplasts 110 	LOC_Os10g35010.1	"ATTIC110/TIC110, putative, expressed"	Medtr5g082650.1	"chloroplast inner envelope protein, 110 kD, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23587.2.A1_a_at	A	A1TS	POPTR_0001s13380	POPTR_0001s13380 (11)	scaffold_1:10464816-10465595(-) (11)	NA	Q53NF7	NAC domain-containing protein 71	AT5G13180.1	NAC domain containing protein 83 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.23593.1.S1_a_at	A	A3TS	POPTR_0016s02190	POPTR_0098s00320 (11)//POPTR_0016s02190 (11)//POPTR_0016s02200 (11)	scaffold_16:1056313-1056350(-) (11)//scaffold_16:1060101-1060138(-) (11)//scaffold_98:55256-55293(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23593.3.A1_at	A	A1TS	POPTR_0016s02200	POPTR_0016s02200 (10)	scaffold_16:1055828-1059595(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22380.1	UDP-glucosyl transferase 85A3 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23594.1.S1_s_at	A	A1TS	POPTR_0001s21800	POPTR_0001s21800 (11)	scaffold_1:20304902-20306177(-) (11)	NA	NA	NA	AT5G24690.1	Protein of unknown function (DUF3411) 	LOC_Os12g18630.1	expressed protein	Medtr2g095320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23595.1.S1_s_at	A	A1TS	POPTR_0013s04470	POPTR_0013s04470 (11)	scaffold_13:3066279-3067102(+) (11)	NA	Q86YJ7	Ankyrin repeat domain-containing protein 13B	AT3G04470.1	Ankyrin repeat family protein 	LOC_Os02g56530.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2360.1.A1_at	A	A1TS	POPTR_0004s16240	POPTR_0004s16240 (11)	scaffold_4:16646943-16647390(+) (11)	NA	Q9T034	Probable phenylalanyl-tRNA synthetase alpha chain	AT4G39280.1	"phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative "	LOC_Os10g26130.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr4g095590.1	"Phenylalanyl-tRNA synthetase, class IIc; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.2360.2.A1_a_at	A	A2TS	POPTR_0004s16240	POPTR_0009s11890 (11)//POPTR_0004s16240 (11)	scaffold_4:16645675-16647049(+) (11)//scaffold_9:9792026-9793380(+) (10)	NA	Q9T034	Probable phenylalanyl-tRNA synthetase alpha chain	AT4G39280.1	"phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative "	LOC_Os10g26130.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr4g095590.1	"Phenylalanyl-tRNA synthetase, class IIc; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.2360.2.A1_at	A	A1TS	POPTR_0009s11890	POPTR_0009s11890 (11)	scaffold_9:9792857-9793550(+) (11)	NA	Q9T034	Probable phenylalanyl-tRNA synthetase alpha chain	AT4G39280.1	"phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative "	LOC_Os10g26130.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr4g095590.1	"Phenylalanyl-tRNA synthetase, class IIc; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.2360.3.S1_a_at	A	A1TS	POPTR_0004s16240	POPTR_0004s16240 (11)	scaffold_4:16642974-16644701(+) (11)	NA	Q9T034	Probable phenylalanyl-tRNA synthetase alpha chain	AT4G39280.1	"phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative "	LOC_Os10g26130.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr4g095590.1	"Phenylalanyl-tRNA synthetase, class IIc; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.2360.3.S1_at	A	A1TS	POPTR_0004s16240	POPTR_0004s16240 (11)	scaffold_4:16639971-16642450(+) (11)	NA	Q9T034	Probable phenylalanyl-tRNA synthetase alpha chain	AT4G39280.1	"phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative "	LOC_Os10g26130.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr4g095590.1	"Phenylalanyl-tRNA synthetase, class IIc; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.23610.1.S1_s_at	A	A2TS	POPTR_0006s04620	POPTR_0006s04620 (11)//POPTR_0016s04310 (11)	scaffold_16:2492659-2493969(+) (11)//scaffold_6:3164300-3165595(+) (11)	NA	A7RWP6	Eukaryotic translation initiation factor 3 subunit E	AT3G57290.1	eukaryotic translation initiation factor 3E 	LOC_Os07g12110.1	"eukaryotic translation initiation factor 3 subunit E, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2363.1.A1_at	A	A1TS	POPTR_0018s03090	POPTR_0018s03090 (11)	scaffold_18:2756173-2756613(+) (11)	NA	Q8RXV3	Probable protein phosphatase 2C 59	AT4G31750.1	HOPW1-1-interacting 2 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr1g016250.2	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2363.2.A1_s_at	A	A1TS	POPTR_0006s28340	POPTR_0006s28340 (11)	scaffold_6:26054197-26054638(+) (11)	NA	Q8RXV3	Probable protein phosphatase 2C 59	AT4G31750.1	HOPW1-1-interacting 2 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2363.3.A1_at	A	A1TS	POPTR_0018s03100	POPTR_0018s03100 (11)	scaffold_18:2756103-2756766(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23657.1.S1_s_at	A	A1TS	POPTR_0002s20340	POPTR_0002s20340 (11)	scaffold_2:16364180-16364924(+) (11)	NA	O24301	Sucrose synthase 2	AT4G02280.1	sucrose synthase 3 	LOC_Os03g22120.1	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.23657.2.S1_at	A	A1MS	POPTR_0002s20340	POPTR_0002s20340 (9)	scaffold_2:16362484-16362765(+) (9)	NA	O24301	Sucrose synthase 2	AT4G02280.1	sucrose synthase 3 	LOC_Os03g22120.1	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.23657.2.S1_s_at	A	A1TS	POPTR_0002s20340	POPTR_0002s20340 (11)	scaffold_2:16362503-16362654(+) (11)	NA	O24301	Sucrose synthase 2	AT4G02280.1	sucrose synthase 3 	LOC_Os03g22120.1	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.23662.1.S1_s_at	A	A1TS	POPTR_0002s00310	POPTR_0002s00310 (11)	scaffold_2:58398-59682(+) (11)	NA	NA	NA	AT5G25070.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g40450.1	"uvrB/uvrC motif family protein, expressed"	AC151525_29.1	hypothetical protein AC151525.18 152102-148754 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.23677.1.A1_at	A	A1TS	POPTR_0004s21620	POPTR_0004s21620 (11)	scaffold_4:20653948-20654442(-) (11)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT1G20670.1	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr3g069040.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23691.1.S1_at	A	A1TS	POPTR_0018s01540	POPTR_0018s01540 (10)	scaffold_18:1459587-1460092(+) (10)	NA	O48946	Cellulose synthase A catalytic subunit 1 [UDP-forming]	AT4G32410.1	cellulose synthase 1 	LOC_Os05g08370.1	"CESA1 - cellulose synthase, expressed"	Medtr3g136720.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.2371.1.A1_at	A	A1MS	POPTR_0003s16690	POPTR_0003s16690 (11)	scaffold_3:16234139-16234647(+) (11)	NA	NA	NA	AT5G13090.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g29810.1	conserved hypothetical protein	Medtr2g029450.1	"protein F12F1.11 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23710.1.S1_at	A	A1TS	POPTR_0010s00490	POPTR_0010s00490 (11)	scaffold_10:244004-244163(-) (11)	NA	Q8RWC9	CBL-interacting serine/threonine-protein kinase 1	AT3G17510.2	CBL-interacting protein kinase 1 	LOC_Os01g18800.1	"CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g052930.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.23712.1.A1_at	A	A1TS	POPTR_0005s06090	POPTR_0005s06090 (9)	scaffold_5:4002166-4002830(-) (9)	NA	Q7XKV4	Beta-glucosidase 12	AT5G24550.1	beta glucosidase 32 	LOC_Os04g39880.1	"Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.23719.1.S1_s_at	A	A1TS	POPTR_0001s30370	POPTR_0001s30370 (11)	scaffold_1:28859007-28859087(-) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT3G43740.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g32580.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g005220.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.23723.1.S1_at	A	A1TS	POPTR_0005s23110	POPTR_0005s23110 (11)	scaffold_5:21938864-21939648(+) (11)	NA	Q9LYA9	"Uncharacterized protein At3g63140, chloroplastic"	AT3G63140.1	chloroplast stem-loop binding protein of  41 kDa 	LOC_Os07g11110.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23723.2.S1_a_at	A	A1TS	POPTR_0002s05390	POPTR_0002s05390 (11)	scaffold_2:3514455-3514553(-) (11)	NA	Q9LYA9	"Uncharacterized protein At3g63140, chloroplastic"	AT3G63140.1	chloroplast stem-loop binding protein of  41 kDa 	LOC_Os07g11110.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23723.2.S1_at	A	A1TS	POPTR_0002s05390	POPTR_0002s05390 (11)	scaffold_2:3513706-3514410(-) (11)	NA	Q9LYA9	"Uncharacterized protein At3g63140, chloroplastic"	AT3G63140.1	chloroplast stem-loop binding protein of  41 kDa 	LOC_Os07g11110.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23723.3.S1_a_at	A	A2TS	POPTR_0002s05390	POPTR_0002s05390 (11)//POPTR_0005s23110 (11)	scaffold_2:3514589-3515166(-) (11)//scaffold_5:21938288-21938815(+) (11)	NA	Q9LYA9	"Uncharacterized protein At3g63140, chloroplastic"	AT3G63140.1	chloroplast stem-loop binding protein of  41 kDa 	LOC_Os07g11110.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23738.1.S1_s_at	A	A1TS	POPTR_0003s07530	POPTR_0003s07530 (11)	scaffold_3:9087176-9087631(-) (11)	NA	NA	NA	AT4G17330.1	G2484-1 protein 	LOC_Os10g41030.2	"agenet domain containing protein, putative, expressed"	Medtr5g012830.1	Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.2374.1.A1_at	A	A1TS	POPTR_0019s02700	POPTR_0019s02700 (11)	scaffold_19:2506743-2507313(+) (11)	POPTR_0019s02720 (6)	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.2374.1.A1_s_at	A	A4TS	POPTR_0019s01900	POPTR_0019s02760 (11)//POPTR_0019s02740 (11)//POPTR_0019s01900 (11)//POPTR_0019s02700 (11)	scaffold_19:1683204-1683385(+) (11)//scaffold_19:2507111-2507292(+) (11)//scaffold_19:2541334-2541515(+) (11)//scaffold_19:2565913-2566094(+) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.23740.1.S1_s_at	A	A1TS	POPTR_0006s23010	POPTR_0006s23010 (11)	scaffold_6:21844136-21844557(+) (11)	NA	NA	NA	AT2G37400.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23742.1.S1_at	A	A1TS	POPTR_0004s01290	POPTR_0004s01290 (11)	scaffold_4:702042-702596(+) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr8g139010.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23746.1.A1_at	A	A1MS	POPTR_0010s06860	POPTR_0010s06860 (11)	scaffold_10:8118077-8118379(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23748.1.S1_at	A	A1TS	POPTR_0017s00480	POPTR_0017s00480 (11)	scaffold_17:180215-180732(+) (11)	NA	Q9M1Y1	F-box/kelch-repeat protein SKIP20	AT3G59940.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os11g14140.1	"OsFBK25 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g134000.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23759.1.S1_s_at	A	A1TS	POPTR_0015s04140	POPTR_0015s04140 (11)	scaffold_15:4160391-4161316(+) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2376.1.S1_at	A	A1TS	POPTR_0014s09490	POPTR_0014s09490 (11)	scaffold_14:7044423-7044924(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G01300.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g41550.1	"aspartic proteinase, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2376.2.A1_s_at	A	A1TS	POPTR_0002s17270	POPTR_0002s17270 (11)	scaffold_2:13034436-13034784(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G01300.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g41550.1	"aspartic proteinase, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23775.1.A1_at	A	A1TS	POPTR_0013s14010	POPTR_0013s14010 (11)	scaffold_13:14318382-14318915(-) (11)	NA	P51094	Anthocyanidin 3-O-glucosyltransferase 2	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128440.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008152|metabolic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.23780.1.S1_at	A	A1TS	POPTR_0013s14300	POPTR_0013s14300 (11)	scaffold_13:14544787-14545070(+) (11)	NA	NA	NA	AT4G28210.1	embryo defective 1923 	NA	NA	AC229695_5.1	"EMB1923, putative AC229695.5 25446-23176 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23797.1.S1_a_at	A	A2TS	POPTR_0001s46810	POPTR_0011s16470 (11)//POPTR_0001s46810 (11)	scaffold_1:47206277-47207504(-) (11)//scaffold_11:18374618-18375371(-) (11)	NA	Q2LAM0	Fatty acid 2-hydroxylase	AT2G34770.1	fatty acid hydroxylase 1 	LOC_Os03g56820.1	"fatty acid hydroxylase, putative, expressed"	AC147501_23.1	Fatty acid hydroxylase AC147501.9 90999-82625 E EGN_Mt090430 200	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.23797.1.S1_at	A	A1TS	POPTR_0011s16470	POPTR_0011s16470 (10)	scaffold_11:18374303-18375057(-) (10)	NA	Q4R4P4	Fatty acid 2-hydroxylase	AT2G34770.1	fatty acid hydroxylase 1 	LOC_Os03g56820.1	"fatty acid hydroxylase, putative, expressed"	AC147501_23.1	Fatty acid hydroxylase AC147501.9 90999-82625 E EGN_Mt090430 200	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.23797.2.S1_at	A	A1TS	POPTR_0001s46810	POPTR_0001s46810 (11)	scaffold_1:47205960-47206702(-) (11)	NA	Q2LAM0	Fatty acid 2-hydroxylase	AT2G34770.1	fatty acid hydroxylase 1 	LOC_Os03g56820.1	"fatty acid hydroxylase, putative, expressed"	AC147501_23.1	Fatty acid hydroxylase AC147501.9 90999-82625 E EGN_Mt090430 200	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.2380.1.S1_at	A	A1TS	POPTR_0018s02250	POPTR_0018s02250 (11)	scaffold_18:2007084-2007941(-) (11)	POPTR_0006s27650 (8)	P46248	"Aspartate aminotransferase, chloroplastic"	AT4G31990.2	aspartate aminotransferase 5 	LOC_Os02g55420.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.23802.1.S1_a_at	A	A1TS	POPTR_0013s04390	POPTR_0013s04390 (11)	scaffold_13:3019228-3019553(+) (11)	NA	Q6AXT7	RNA-binding protein 42	AT3G04500.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g40900.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g093610.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.23802.2.S1_a_at	A	A1TS	POPTR_0013s04390	POPTR_0013s04390 (11)	scaffold_13:3018546-3018611(+) (11)//scaffold_2344:84-149(+) (11)//scaffold_4:10152755-10152791(-) (9)	NA	Q6AXT7	RNA-binding protein 42	AT3G04500.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g40900.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g093610.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.23802.2.S1_at	A	A1TS	POPTR_0019s03570	POPTR_0019s03570 (9)	scaffold_19:3681891-3682173(+) (9)//scaffold_2344:706-1034(+) (9)	NA	Q6AXT7	RNA-binding protein 42	AT3G04500.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g45240.4	"RNA recognition motif containing protein, putative, expressed"	Medtr1g093610.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.23802.3.S1_at	A	A1MS	POPTR_0013s04390	POPTR_0013s04390 (11)	scaffold_13:3018367-3019426(+) (11)	NA	Q6AXT7	RNA-binding protein 42	AT3G04500.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g40900.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g093610.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.23804.1.S1_at	A	A1TS	POPTR_0010s02450	POPTR_0010s02450 (11)	scaffold_10:2840391-2841104(-) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.23804.1.S1_s_at	A	A1TS	POPTR_0010s02450	POPTR_0010s02450 (11)	scaffold_10:2838817-2840305(-) (11)	POPTR_0008s22590 (8)	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.23813.2.S1_a_at	A	A2TS	POPTR_0006s00480	POPTR_0006s00480 (11)//POPTR_0016s00520 (11)	scaffold_16:166886-166922(-) (11)//scaffold_6:231628-231664(-) (11)	NA	Q8LAS7	Calcineurin B-like protein 2	AT5G55990.1	calcineurin B-like protein 2 	LOC_Os03g42840.1	"calcineurin B, putative, expressed"	Medtr5g104010.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23813.2.S1_at	A	A1TS	POPTR_0006s00480	POPTR_0006s00480 (11)	scaffold_6:231048-231404(-) (11)	NA	Q8LAS7	Calcineurin B-like protein 2	AT5G55990.1	calcineurin B-like protein 2 	LOC_Os03g42840.1	"calcineurin B, putative, expressed"	Medtr5g104010.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23813.3.S1_a_at	A	A1TS	POPTR_0016s00520	POPTR_0016s00520 (11)	scaffold_16:166465-167713(-) (11)	NA	Q75LU8	Calcineurin B-like protein 3	AT5G55990.1	calcineurin B-like protein 2 	LOC_Os03g42840.1	"calcineurin B, putative, expressed"	AC233669_19.1	Calcium-binding EF-hand AC233669.2 87020-91830 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23817.1.S1_at	A	A1TS	POPTR_0007s07850	POPTR_0007s07850 (11)	scaffold_7:6280545-6280997(-) (11)	NA	Q8RXF1	Probable splicing factor 3A subunit 1	AT1G14650.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein 	LOC_Os02g14780.2	"splicing factor 3 subunit 1, putative, expressed"	Medtr4g156190.1	SWAP/Surp; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.2382.1.A1_at	A	A1TS	POPTR_0006s04620	POPTR_0006s04620 (11)	scaffold_6:3166788-3168192(+) (11)	NA	A7RWP6	Eukaryotic translation initiation factor 3 subunit E	AT3G57290.1	eukaryotic translation initiation factor 3E 	LOC_Os07g12110.1	"eukaryotic translation initiation factor 3 subunit E, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2382.2.A1_s_at	A	A1TS	POPTR_0016s04310	POPTR_0016s04310 (11)	scaffold_16:2495102-2496044(+) (11)	NA	A7RWP6	Eukaryotic translation initiation factor 3 subunit E	AT3G57290.1	eukaryotic translation initiation factor 3E 	LOC_Os07g12110.1	"eukaryotic translation initiation factor 3 subunit E, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2383.1.A1_s_at	A	A1TS	POPTR_0010s07020	POPTR_0010s07020 (11)	scaffold_10:8265648-8265821(-) (11)	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.2383.2.S1_at	A	A1TS	POPTR_0008s17560	POPTR_0008s17560 (11)	scaffold_8:11830431-11830483(+) (11)	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.2383.3.A1_at	A	A1MS	POPTR_0010s07020	POPTR_0010s07020 (11)	scaffold_10:8266012-8266109(-) (11)	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.23842.1.S1_a_at	A	A1TS	POPTR_0009s01110	POPTR_0009s01110 (11)	scaffold_9:1246047-1246267(+) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G22920.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os03g05270.2	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr4g076230.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.2385.1.A1_at	A	A1TS	POPTR_0006s28720	POPTR_0006s28720 (11)	scaffold_6:26323794-26324023(-) (11)	NA	Q16629	Serine/arginine-rich splicing factor 7	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.7	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.2385.2.A1_a_at	A	A1TS	POPTR_0006s28720	POPTR_0006s28720 (11)	scaffold_6:26324015-26324222(-) (11)	NA	Q16629	Serine/arginine-rich splicing factor 7	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.7	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.2386.1.S1_at	A	A1TS	POPTR_0009s02740	POPTR_0009s02740 (11)	scaffold_9:3487886-3490244(+) (11)	NA	Q06445	Cysteine proteinase inhibitor	AT3G12490.1	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.23870.3.S1_s_at	A	A1TS	POPTR_0004s21970	POPTR_0004s21970 (11)	scaffold_4:20914365-20914831(-) (11)	NA	Q9SAR5	Ankyrin repeat domain-containing protein 2	AT2G17390.1	ankyrin repeat-containing 2B 	LOC_Os09g33810.2	"ankyrin repeat domain containing protein, putative, expressed"	Medtr3g154100.1	"Ankyrin repeat domain-containing protein 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23892.1.S1_at	A	A1TS	POPTR_0003s16160	POPTR_0003s16160 (11)	scaffold_3:15766170-15766611(-) (11)	NA	NA	NA	AT5G13310.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g32580.1	expressed protein	Medtr7g097090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23901.1.A1_at	A	A1MS	POPTR_0005s00550	POPTR_0005s00550 (11)	scaffold_5:217913-218301(+) (11)	NA	O65399	"Glucan endo-1,3-beta-glucosidase 1"	AT2G30933.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os03g61780.2	"glucan endo-1,3-beta-glucosidase-related, putative, expressed"	Medtr1g102900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23914.1.S1_at	A	A1TS	POPTR_0005s12580	POPTR_0005s12580 (11)	scaffold_5:9358472-9358875(-) (11)	NA	Q42404	U1 small nuclear ribonucleoprotein 70 kDa	AT3G50670.1	U1 small nuclear ribonucleoprotein-70K 	LOC_Os10g02630.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g093540.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.2393.1.A1_at	A	A1TS	POPTR_0012s09200	POPTR_0012s09200 (11)	scaffold_12:10258621-10259407(+) (11)	NA	Q04836	"31 kDa ribonucleoprotein, chloroplastic"	AT4G24770.1	31-kDa RNA binding protein 	LOC_Os09g39180.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g076830.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.2393.2.S1_a_at	A	A1TS	POPTR_0015s09810	POPTR_0015s09810 (11)	scaffold_15:10922287-10922732(+) (11)	NA	Q04836	"31 kDa ribonucleoprotein, chloroplastic"	AT4G24770.1	31-kDa RNA binding protein 	LOC_Os09g39180.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g076830.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.2394.1.A1_s_at	A	A2TS	POPTR_0001s45850	POPTR_0001s45850 (11)//POPTR_0011s15070 (11)	scaffold_1:46349800-46350609(+) (11)//scaffold_11:17254120-17254937(-) (11)	NA	Q9C884	Probable methyltransferase PMT18	AT1G33170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g01450.1	"methyltransferase, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.23940.2.S1_a_at	A	A1TS	POPTR_0006s13540	POPTR_0006s13540 (11)	scaffold_6:10758291-10759764(-) (11)	NA	Q9ZUU2	"UPF0308 protein At2g37240, chloroplastic"	AT2G37240.1	Thioredoxin superfamily protein 	LOC_Os03g17600.1	expressed protein	Medtr7g120730.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23940.2.S1_at	A	A1MS	POPTR_0006s13540	POPTR_0006s13540 (10)	scaffold_6:10758148-10760312(-) (10)	NA	Q9ZUU2	"UPF0308 protein At2g37240, chloroplastic"	AT2G37240.1	Thioredoxin superfamily protein 	LOC_Os03g17600.1	expressed protein	Medtr7g120730.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23940.3.S1_a_at	A	A1TS	POPTR_0006s13540	POPTR_0006s13540 (9)	scaffold_6:10760010-10761014(-) (9)	NA	Q9ZUU2	"UPF0308 protein At2g37240, chloroplastic"	AT2G37240.1	Thioredoxin superfamily protein 	LOC_Os03g17600.1	expressed protein	Medtr7g120730.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23942.1.A1_at	A	A1TS	POPTR_0001s44870	POPTR_0001s44870 (11)	scaffold_1:45251273-45251771(+) (11)	NA	A6QLM0	Transmembrane protein 189	AT4G27030.1	fatty acid desaturase A 	LOC_Os08g08850.1	"carotenoid synthesis regulator CarF, putative, expressed"	Medtr3g068270.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2396.1.S1_at	A	A1TS	POPTR_0014s06890	POPTR_0014s06890 (9)	scaffold_14:5202075-5202408(+) (9)	NA	Q6L545	Gibberellin receptor GID1	AT2G45600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g14730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr8g150910.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.240.1.A1_at	A	A1TS	POPTR_0009s00960	POPTR_0009s00960 (11)	scaffold_9:1094018-1094539(-) (11)	NA	NA	NA	AT3G47490.1	HNH endonuclease 	LOC_Os03g07370.1	"HNH endonuclease domain-containing protein, putative, expressed"	NA	NA	NA	GO:0004519|endonuclease activity||GO:0003676|nucleic acid binding	NA
PtpAffx.24003.1.A1_at	A	A1MA	POPTR_0004s21910	POPTR_0004s21910 (11)	scaffold_4:20874902-20875417(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os02g48210.1	"lectin-like protein kinase, putative, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.24009.1.A1_at	A	A1TS	POPTR_0001s16050	POPTR_0001s16050 (9)	scaffold_1:12857648-12862423(+) (10)	NA	O81123	Zinc transporter 1	AT3G12750.1	zinc transporter 1 precursor 	LOC_Os07g12890.2	"metal cation transporter, putative, expressed"	Medtr3g107170.2	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.24010.1.S1_a_at	A	A1TS	POPTR_0007s12010	POPTR_0007s12010 (11)	scaffold_7:12350269-12350396(+) (11)	NA	NA	NA	AT2G23670.1	homolog of Synechocystis YCF37 	NA	NA	Medtr5g018610.1	"YCF37 {Arabidop, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24023.1.A1_at	A	A1TS	POPTR_0010s15510	POPTR_0010s15510 (10)	scaffold_10:14714085-14714410(-) (10)	NA	Q9FNS4	"PsbB mRNA maturation factor Mbb1, chloroplastic"	AT3G17040.1	high chlorophyll fluorescent 107 	LOC_Os03g19560.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g137600.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24024.1.A1_s_at	A	A1TS	POPTR_0002s13040	POPTR_0002s13040 (11)	scaffold_2:9697439-9698118(-) (11)	NA	D0EL35	CST complex subunit CTC1	AT4G09680.1	conserved telomere maintenance component 1 	LOC_Os09g20910.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24025.1.S1_at	A	A1TS	POPTR_0015s01910	POPTR_0015s01910 (9)	scaffold_15:1248970-1258791(-) (9)//scaffold_15:1278149-1278329(-) (9)//scaffold_15:1307919-1308142(-) (9)	NA	NA	NA	AT5G53450.1	OBP3-responsive gene 1 	LOC_Os01g46720.1	expressed protein	Medtr3g124180.1	"Proteinase inhibitor I4, serpin; Protein kinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24048.1.A1_at	A	A1MS	POPTR_0007s04100	POPTR_0007s04100 (10)	scaffold_7:2458454-2459540(-) (10)	NA	NA	NA	AT1G74880.1	NAD(P)H:plastoquinone dehydrogenase complex subunit O 	LOC_Os01g72950.1	expressed protein	Medtr3g143350.1	"NDH-O, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2405.1.S1_at	A	A1TS	POPTR_0005s28090	POPTR_0005s28090 (11)	scaffold_5:25473615-25474399(-) (11)	NA	NA	NA	AT5G42370.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os02g37910.1	expressed protein	Medtr5g093110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24061.1.S1_at	A	A1TS	POPTR_0002s02430	POPTR_0002s02430 (11)	scaffold_2:1371157-1371228(+) (11)	NA	Q93X17	Snakin-2	AT1G75750.2	GAST1 protein homolog 1 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr3g156410.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24069.1.S1_s_at	A	A1TS	POPTR_0001s04350	POPTR_0001s04350 (11)	scaffold_1:3453792-3454003(+) (11)	NA	Q8WXF0	Serine/arginine-rich splicing factor 12	AT3G13570.1	SC35-like splicing factor 30A 	LOC_Os03g25770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.24080.1.A1_s_at	A	A1TS	POPTR_0001s34370	POPTR_0001s34370 (11)	scaffold_1:32521274-32521793(-) (11)	POPTR_0011s02900 (6)	P49211	60S ribosomal protein L32-1	AT4G18100.1	Ribosomal protein L32e 	LOC_Os09g32532.2	"60S ribosomal protein L32, putative, expressed"	Medtr4g134080.1	Ribosomal protein L32e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.24082.1.A1_at	A	A1TS	POPTR_0014s04850	POPTR_0014s04850 (11)	scaffold_14:3744349-3744755(+) (11)	NA	Q41001	Blue copper protein	AT3G60280.1	uclacyanin 3 	LOC_Os02g43660.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr3g150210.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.24082.2.S1_at	A	A1TA	POPTR_0014s04850	POPTR_0014s04850 (10)	scaffold_14:3744311-3744696(-) (10)	NA	Q41001	Blue copper protein	AT3G60280.1	uclacyanin 3 	LOC_Os02g43660.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr3g150210.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.24092.1.S1_at	A	A4TS	POPTR_0019s04330	POPTR_0019s04330 (11)//POPTR_0019s04290 (10)//POPTR_0019s04340 (9)//POPTR_0019s04280 (9)	scaffold_19:4360365-4360837(-) (10)//scaffold_19:4380279-4380725(+) (10)//scaffold_19:4385118-4385590(-) (10)//scaffold_19:4421171-4421641(-) (11)//scaffold_19:4440943-4441537(+) (11)	POPTR_0019s04270 (8)	Q9SFF9	Germin-like protein subfamily 1 member 7	AT3G05950.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr1g093090.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.24095.2.A1_s_at	A	A1TS	POPTR_0007s08400	POPTR_0007s08400 (11)	scaffold_7:7197527-7197610(-) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os02g32030.1	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.2410.2.A1_a_at	A	A1TS	POPTR_0013s11590	POPTR_0013s11590 (10)	scaffold_13:12236459-12237020(-) (10)	NA	Q9H6Y7	E3 ubiquitin-protein ligase RNF167	AT1G71980.1	Protease-associated (PA) RING/U-box zinc finger family protein 	LOC_Os03g07130.4	"RING finger protein 13, putative, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2410.3.S1_at	A	A1TS	POPTR_0019s11200	POPTR_0019s11200 (11)	scaffold_19:12573474-12573827(-) (11)	NA	Q9H6Y7	E3 ubiquitin-protein ligase RNF167	AT1G71980.1	Protease-associated (PA) RING/U-box zinc finger family protein 	LOC_Os03g07130.2	"RING finger protein 13, putative, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24101.1.A1_at	A	A1TS	POPTR_0013s11860	POPTR_0013s11860 (11)	scaffold_13:12489879-12490236(+) (11)	NA	Q9LVP0	Probable leucine-rich repeat receptor-like protein kinase At5g63930	AT1G34420.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os12g08180.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.24103.1.A1_at	A	A1TS	POPTR_0002s24250	POPTR_0002s24250 (11)	scaffold_2:21662863-21663201(+) (11)	NA	A1EC31	CLAVATA3/ESR (CLE)-related protein TDIF	NA	NA	NA	NA	Medtr7g064720.1	"CLAVATA3/ESR-related protein precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24104.1.A1_at	A	A1TS	POPTR_0010s03000	POPTR_0010s03000 (11)	scaffold_10:3508760-3509229(+) (11)	NA	Q9M8J3	Protein FAR1-RELATED SEQUENCE 7	AT3G06250.1	FAR1-related sequence 7 	LOC_Os12g12380.3	"transposon protein, putative, unclassified, expressed"	Medtr2g026200.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.24113.1.A1_at	A	A1TS	POPTR_0016s08150	POPTR_0016s08150 (11)	scaffold_16:6018326-6018822(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24127.1.S1_at	A	A1TS	POPTR_0007s13460	POPTR_0007s13460 (10)	scaffold_7:13537008-13537539(-) (10)	NA	P34913	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g43970.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138740.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24127.2.A1_a_at	A	A1TS	POPTR_0007s13460	POPTR_0007s13460 (11)	scaffold_7:13538000-13538195(-) (11)	NA	P34913	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g43970.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138740.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2413.1.S1_a_at	A	A1TS	POPTR_0003s08550	POPTR_0003s08550 (10)	scaffold_3:9935476-9935788(-) (10)	NA	Q5ZIJ0	BUD13 homolog	AT1G31870.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os08g08080.1	"BUD13, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24133.1.S1_s_at	A	A3TS	POPTR_0002s09530	POPTR_0002s09530 (11)//POPTR_0005s16940 (11)//POPTR_1092s00200 (11)	scaffold_1092:857-894(+) (11)//scaffold_2:6828275-6828312(+) (11)//scaffold_5:13938899-13938936(+) (11)	NA	NA	NA	AT1G78110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). 	LOC_Os02g51720.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2414.1.S1_s_at	A	A1TS	POPTR_0001s45920	POPTR_0001s45920 (11)	scaffold_1:46424526-46424639(+) (11)	NA	Q9SV84	Probable aquaporin NIP5-1	AT4G10380.1	NOD26-like intrinsic protein 5;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.2414.1.S2_s_at	A	A1TS	POPTR_0001s45920	POPTR_0001s45920 (11)	scaffold_1:46427256-46428860(+) (11)	NA	Q9SV84	Probable aquaporin NIP5-1	AT4G10380.1	NOD26-like intrinsic protein 5;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.24142.1.A1_at	A	A1TS	POPTR_0005s22880	POPTR_0005s22880 (11)	scaffold_5:21769786-21769884(+) (11)	NA	Q9SKX5	Probable polyamine oxidase 2	AT2G43020.1	polyamine oxidase 2 	LOC_Os04g53190.2	"CPuORF12 - conserved peptide uORF-containing transcript, expressed"	Medtr5g097430.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.24151.1.A1_at	A	A1TS	POPTR_0007s05560	POPTR_0007s05560 (11)	scaffold_7:3639202-3639767(-) (11)	NA	NA	NA	AT4G39840.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink). 	LOC_Os09g20540.1	conserved hypothetical protein	Medtr3g101480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24152.1.A1_at	A	A1TS	POPTR_0010s10230	POPTR_0010s10230 (11)	scaffold_10:10793510-10795149(-) (11)	NA	Q3E9C3	"DEAD-box ATP-dependent RNA helicase 58, chloroplastic"	AT5G19210.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g73900.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g146310.1	"Beta-lactamase, class A; ATP-requiring DNA helicase RecQ; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.24154.1.A1_at	A	A1TS	POPTR_0014s01720	POPTR_0014s01720 (10)	scaffold_14:1604687-1605051(-) (10)	NA	Q9H1I8	Activating signal cointegrator 1 complex subunit 2	AT1G27752.1	Ubiquitin system component Cue protein 	LOC_Os03g10750.1	"CUE domain containing protein, expressed"	Medtr1g023480.1	"T22C5.20, related "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.24155.1.A1_s_at	A	A1TS	POPTR_0006s22210	POPTR_0006s22210 (11)	scaffold_6:21255198-21255475(-) (11)	NA	Q9SVD7	Ubiquitin-conjugating enzyme E2 variant 1D	AT3G52560.1	ubiquitin E2 variant 1D-4 	LOC_Os09g12570.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g157390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24159.1.A1_at	A	A2TS	POPTR_0015s08720	POPTR_0015s08720 (11)//POPTR_0015s08710 (10)	scaffold_15:10026825-10027547(-) (10)//scaffold_15:10041135-10041857(-) (11)	NA	P42737	"Carbonic anhydrase 2, chloroplastic"	AT5G14740.2	carbonic anhydrase 2 	LOC_Os01g45274.4	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr3g113710.1	"Legume lectin, alpha; Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.24159.1.A1_x_at	A	A2TS	POPTR_0015s08720	POPTR_0015s08720 (11)//POPTR_0015s08710 (10)	scaffold_15:10026825-10027547(-) (10)//scaffold_15:10041135-10041857(-) (11)	NA	P42737	"Carbonic anhydrase 2, chloroplastic"	AT5G14740.2	carbonic anhydrase 2 	LOC_Os01g45274.4	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr3g113710.1	"Legume lectin, alpha; Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.24159.2.A1_at	A	A2TS	POPTR_0015s08710	POPTR_0015s08710 (9)//POPTR_0015s08720 (9)	scaffold_15:10026942-10026988(-) (9)//scaffold_15:10041252-10041298(-) (9)	NA	P42737	"Carbonic anhydrase 2, chloroplastic"	AT5G14740.2	carbonic anhydrase 2 	LOC_Os01g45274.3	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr3g113710.1	"Legume lectin, alpha; Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.24166.1.A1_at	A	A1TS	POPTR_0005s18400	POPTR_0005s18400 (10)	scaffold_5:16582961-16583526(+) (10)	NA	P47927	Floral homeotic protein APETALA 2	AT4G36920.2	Integrase-type DNA-binding superfamily protein 	LOC_Os04g55560.2	"AP2 domain containing protein, expressed"	Medtr5g016710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.24171.1.A1_a_at	A	A3TS	POPTR_0010s03100	POPTR_0010s03100 (11)//POPTR_2237s00200 (9)//POPTR_0008s20620 (9)	scaffold_10:3729299-3733131(-) (11)//scaffold_2237:3113-3297(+) (9)//scaffold_8:14381515-14385561(-) (11)	NA	P0C8Q9	Uncharacterized protein At5g19025	AT3G06180.1	Ribosomal protein L34e superfamily protein 	LOC_Os05g32670.1	"pentatricopeptide repeat-containing protein, putative, expressed"	Medtr2g026810.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24171.2.A1_at	A	A1TS	POPTR_0010s03100	POPTR_0010s03100 (11)	scaffold_10:3729157-3733155(-) (11)	NA	P0C8Q9	Uncharacterized protein At5g19025	AT3G06180.1	Ribosomal protein L34e superfamily protein 	LOC_Os05g32670.1	"pentatricopeptide repeat-containing protein, putative, expressed"	Medtr2g026810.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24172.1.S1_at	A	A1TS	POPTR_0009s15760	POPTR_0009s15760 (11)	scaffold_9:12116799-12118828(+) (11)	NA	NA	NA	AT3G44020.1	thylakoid lumenal P17.1 protein 	LOC_Os01g70460.2	expressed protein	Medtr5g093890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24179.1.S1_at	A	A1TA	POPTR_0004s15640	POPTR_0004s15640 (11)	scaffold_4:16239532-16239731(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24180.2.A1_a_at	A	A1TS	POPTR_0018s03120	POPTR_0018s03120 (11)	scaffold_18:2764463-2767889(-) (11)	NA	Q96361	ADP-ribosylation factor 1	AT2G24765.1	ADP-ribosylation factor 3 	LOC_Os08g15040.1	"ADP-ribosylation factor, putative, expressed"	Medtr8g128220.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.24186.1.S1_at	A	A1TS	POPTR_0006s20250	POPTR_0006s20250 (11)	scaffold_6:19304781-19305357(-) (11)	NA	NA	NA	AT5G58200.2	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os06g08390.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g146220.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.24189.1.A1_a_at	A	A1TS	POPTR_0008s20110	POPTR_0008s20110 (11)	scaffold_8:13910028-13912069(+) (11)	NA	NA	NA	AT5G18800.2	Cox19-like CHCH family protein 	LOC_Os03g18420.1	"CHCH domain containing protein, expressed"	AC233070_20.1	CHCH AC233070.4 91111-95201 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2420.1.S1_at	A	A1TS	POPTR_0007s01450	POPTR_0007s01450 (10)	scaffold_7:819285-819334(+) (10)	NA	Q9STF9	Pentatricopeptide repeat-containing protein At3g46870	AT5G09320.1	Vacuolar sorting protein 9 (VPS9) domain 	LOC_Os07g36450.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g120590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24208.1.S1_at	A	A1TS	POPTR_0011s12530	POPTR_0011s12530 (10)	scaffold_11:15270587-15271862(-) (10)	NA	Q38945	PAP-specific phosphatase HAL2-like	AT5G54390.1	HAL2-like 	LOC_Os02g56170.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.2421.1.S1_a_at	A	A2TS	POPTR_0007s06700	POPTR_0007s06700 (11)//POPTR_0007s06190 (10)	scaffold_5:5788188-5788248(-) (11)//scaffold_7:4354472-4354532(-) (10)//scaffold_7:5086878-5086938(+) (11)	NA	Q940M2	"Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial"	AT4G39660.1	alanine:glyoxylate aminotransferase 2 	LOC_Os03g07570.3	"aminotransferase, putative, expressed"	Medtr4g140630.1	"Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2421.1.S1_at	A	A2TS	POPTR_0007s06190	POPTR_0007s06700 (11)//POPTR_0007s06190 (11)	scaffold_7:4354392-4356174(-) (11)//scaffold_7:5085239-5087018(+) (11)	NA	Q940M2	"Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial"	AT4G39660.1	alanine:glyoxylate aminotransferase 2 	LOC_Os03g07570.4	"aminotransferase, putative, expressed"	Medtr4g140630.1	"Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.24222.1.S1_at	A	A1TS	POPTR_0016s02900	POPTR_0016s02900 (11)	scaffold_16:1451143-1451398(+) (11)	NA	Q62383	Transcription elongation factor SPT6	AT1G65440.2	global transcription factor group B1 	LOC_Os05g41510.1	"SH2 motif, putative, expressed"	Medtr7g105590.1	"Alcohol dehydrogenase, zinc-containing; RNA binding S1; Resolvase, RNase H-like fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24245.1.A1_at	A	A1TS	POPTR_0006s18750	POPTR_0006s18750 (11)	scaffold_6:17322837-17323487(+) (11)	NA	O22567	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT4G15560.1	Deoxyxylulose-5-phosphate synthase 	LOC_Os07g09190.1	"transketolase, putative, expressed"	Medtr8g079280.1	"Transketolase, C-terminal-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.24257.1.A1_at	A	A1TS	POPTR_0006s22080	POPTR_0006s22080 (10)	scaffold_6:21095575-21096099(-) (10)	NA	NA	NA	AT3G52480.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24267.1.S1_s_at	A	A1TS	POPTR_0010s04900	POPTR_0010s04900 (11)	scaffold_10:6105290-6107233(-) (11)	NA	NA	NA	AT1G69970.2	CLAVATA3/ESR-RELATED 26 	NA	NA	Medtr5g038150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2427.1.S1_at	A	A1TS	POPTR_0012s14540	POPTR_0012s14540 (11)	scaffold_12:14399436-14399932(-) (11)	NA	Q50EX6	Protein ODORANT1	AT4G12350.1	myb domain protein 42 	LOC_Os09g36250.1	"MYB family transcription factor, putative, expressed"	Medtr5g085860.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24277.1.A1_at	A	A1TS	POPTR_0010s12950	POPTR_0010s12950 (11)	scaffold_10:12881353-12881616(+) (11)	NA	NA	NA	AT2G01190.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os01g04650.1	"PB1 domain containing protein, expressed"	Medtr8g096190.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24278.1.A1_at	A	A1TS	POPTR_0002s25560	POPTR_0002s25560 (11)	scaffold_2:22629116-22629478(-) (11)	NA	P54697	Myosin-J heavy chain	AT1G04160.1	myosin XI B 	LOC_Os02g34080.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.24284.1.A1_s_at	A	A1TS	POPTR_0010s12580	POPTR_0010s12580 (11)	scaffold_10:12577693-12577755(+) (11)	NA	NA	NA	AT1G71110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits to 169 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g03110.1	expressed protein	Medtr1g137360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24293.1.S1_at	A	A1TS	POPTR_0010s03730	POPTR_0010s03730 (11)	scaffold_10:4529522-4529915(-) (11)	NA	Q8L4B2	Nuclear transcription factor Y subunit C-9	AT1G08970.2	"nuclear factor Y, subunit C9 "	LOC_Os02g07450.2	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr7g139450.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.24293.2.A1_at	A	A1TS	POPTR_0008s20780	POPTR_0008s20780 (11)	scaffold_8:14781230-14781785(+) (11)	NA	Q8L4B2	Nuclear transcription factor Y subunit C-9	AT1G08970.2	"nuclear factor Y, subunit C9 "	LOC_Os02g07450.2	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr7g139450.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.24297.1.S1_at	A	A1TS	POPTR_0009s16480	POPTR_0009s16480 (11)	scaffold_9:12506958-12507485(+) (11)	NA	Q5AQ76	Protein transport protein SEC24	AT2G27460.1	sec23/sec24 transport family protein 	LOC_Os05g37120.1	"sec23/Sec24 zinc finger family protein, expressed"	NA	NA	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.24303.1.S1_a_at	A	A1TS	POPTR_0002s02330	POPTR_0002s02330 (11)	scaffold_2:1319077-1319257(+) (11)	NA	Q6DJ78	BRCA1-A complex subunit BRE	AT5G42470.1	CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g50170.1	"BRE, putative, expressed"	Medtr2g034610.1	Brain and reproductive organ-expressed 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24303.1.S1_at	A	A1TS	POPTR_0002s02330	POPTR_0002s02330 (9)	scaffold_2:1317128-1319319(+) (9)	NA	Q6DJ78	BRCA1-A complex subunit BRE	AT5G42470.1	CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g50170.1	"BRE, putative, expressed"	Medtr2g034610.1	Brain and reproductive organ-expressed 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24304.1.S1_at	A	A1TS	POPTR_0010s02420	POPTR_0010s02420 (11)	scaffold_10:2784160-2784635(-) (11)	NA	Q8T277	5'-AMP-activated protein kinase subunit gamma	AT1G09020.1	homolog of yeast sucrose nonfermenting 4 	LOC_Os03g63940.1	"CBS domain containing membrane protein, putative, expressed"	Medtr8g139190.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24309.1.A1_at	A	A1TS	POPTR_0014s11870	POPTR_0014s11870 (10)	scaffold_14:8785560-8786003(-) (10)	NA	NA	NA	AT2G47480.1	Protein of unknown function (DUF3511) 	LOC_Os05g28840.1	expressed protein	Medtr1g107520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24320.1.A1_a_at	A	A1TS	POPTR_0005s24740	POPTR_0005s24740 (11)	scaffold_5:23188948-23189534(+) (11)	NA	Q9Z826	Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547	AT3G54690.1	Sugar isomerase (SIS) family protein 	LOC_Os02g06360.1	"uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0005529|sugar binding	NA
PtpAffx.24322.1.A1_a_at	A	A2TS	POPTR_0001s28230	POPTR_0009s07420 (11)//POPTR_0001s28230 (11)	scaffold_1:27001621-27002073(+) (11)//scaffold_9:6928313-6928762(+) (11)	NA	P95245	Phospholipase C 3	AT2G26870.1	non-specific phospholipase C2 	LOC_Os01g72520.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.24322.2.S1_a_at	A	A1TS	POPTR_0009s07420	POPTR_0009s07420 (11)	scaffold_9:6928868-6928922(+) (11)	NA	P95245	Phospholipase C 3	AT2G26870.1	non-specific phospholipase C2 	LOC_Os01g72520.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.24322.2.S1_at	A	A1TS	POPTR_0009s07420	POPTR_0009s07420 (10)	scaffold_9:6925538-6925843(+) (10)	NA	P95245	Phospholipase C 3	AT2G26870.1	non-specific phospholipase C2 	LOC_Os01g72520.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.24322.3.A1_at	A	A1TS	POPTR_0001s28230	POPTR_0001s28230 (11)	scaffold_1:27001654-27002220(+) (11)	NA	P95245	Phospholipase C 3	AT2G26870.1	non-specific phospholipase C2 	LOC_Os01g72520.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.24328.1.S1_at	A	A1TS	POPTR_0005s26480	POPTR_0005s26480 (11)	scaffold_5:24481978-24482558(-) (11)	NA	Q84JK2	Protein FD	AT4G35900.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g59760.1	"bZIP transcription factor, putative, expressed"	Medtr5g022730.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.24328.3.A1_a_at	A	A1TS	POPTR_0002s02000	POPTR_0002s02000 (11)	scaffold_2:1063145-1063497(+) (11)	NA	Q84JK2	Protein FD	AT2G17770.1	basic region/leucine zipper motif 27 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24330.1.A1_at	A	A1MS	POPTR_0013s04620	POPTR_0013s04620 (9)	scaffold_13:3173000-3173523(+) (9)	NA	P72991	ATP-dependent zinc metalloprotease FtsH 3	AT3G04340.1	FtsH extracellular protease family 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr1g094060.1	Peptidase M41; Caspase Recruitment; AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.24353.1.A1_a_at	A	A1TS	POPTR_0005s21240	POPTR_0005s21240 (11)	scaffold_5:20368565-20369122(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24359.1.A1_at	A	A1TS	POPTR_0004s05650	POPTR_0004s05650 (11)	scaffold_4:4421314-4421894(+) (11)	NA	NA	NA	AT1G29240.1	Protein of unknown function (DUF688) 	LOC_Os01g55410.1	expressed protein	Medtr4g109840.1	Protein of unknown function DUF688 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24361.1.S1_at	A	A1TS	POPTR_0006s23750	POPTR_0006s23750 (9)	scaffold_6:22454130-22455427(-) (11)	NA	Q9SMY8	F-box/LRR-repeat protein 15	AT4G33210.1	F-box family protein 	LOC_Os10g25680.1	"OsFBL52 - F-box domain and LRR containing protein, expressed"	Medtr1g019570.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.24363.1.S1_at	A	A2TS	POPTR_0650s00210	POPTR_0650s00210 (11)//POPTR_0009s02920 (9)	scaffold_650:9433-9830(-) (11)//scaffold_9:3675169-3675567(-) (9)	NA	NA	NA	AT2G31945.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os09g27410.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24372.1.A1_at	A	A1MS	POPTR_0011s09030	POPTR_0011s09030 (11)	scaffold_11:11094590-11095090(+) (11)	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.24373.1.S1_at	A	A1TS	POPTR_0002s20810	POPTR_0002s20810 (11)	scaffold_161:41483-41672(-) (11)//scaffold_2:17022036-17022225(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24373.1.S1_s_at	A	A1TS	POPTR_0002s20810	POPTR_0002s20810 (11)	scaffold_161:41661-41978(-) (11)//scaffold_2:17021730-17022047(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24378.1.S1_a_at	A	A2TS	POPTR_0002s15400	POPTR_0014s07390 (11)//POPTR_0002s15400 (11)	scaffold_14:5564433-5564778(+) (11)//scaffold_2:11527062-11527404(-) (11)	NA	NA	NA	AT3G52790.1	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g02685.1	"lysM domain containing protein, putative, expressed"	Medtr8g047660.1	Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.24378.1.S1_at	A	A1TS	POPTR_0002s15400	POPTR_0002s15400 (11)	scaffold_2:11526875-11527382(-) (11)	NA	NA	NA	AT3G52790.1	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g02685.1	"lysM domain containing protein, putative, expressed"	Medtr8g047660.1	Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.24378.2.S1_at	A	A1TS	POPTR_0014s07390	POPTR_0014s07390 (11)	scaffold_14:5564456-5564867(+) (11)	NA	NA	NA	AT4G25433.1	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g02685.1	"lysM domain containing protein, putative, expressed"	Medtr8g047660.1	Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.2438.1.S1_at	A	A1TS	POPTR_0004s04100	POPTR_0004s04100 (9)	scaffold_4:2938142-2940792(-) (9)	POPTR_0011s04990 (7)	Q9ZR40	Splicing factor U2af large subunit B	AT1G60900.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.2438.3.S1_at	A	A1TS	POPTR_0004s04100	POPTR_0004s04100 (10)	scaffold_4:2936534-2938107(-) (10)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT1G60900.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.24385.1.A1_at	A	A1TS	POPTR_0005s07410	POPTR_0005s07410 (10)	scaffold_5:5068032-5068751(-) (11)	NA	Q40522	Ras-related protein Rab11D	AT5G65270.1	RAB GTPase homolog A4A 	LOC_Os10g23100.1	"ras-related protein, putative, expressed"	Medtr3g101960.1	Ras GTPase; 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.24387.1.A1_at	A	A1MS	POPTR_0013s13100	POPTR_0013s13100 (9)	scaffold_13:13687345-13687637(+) (9)	NA	P22337	"Acyl-[acyl-carrier-protein] desaturase, chloroplastic"	AT2G43710.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os01g69080.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr5g024070.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0045300|acyl-[acyl-carrier-protein] desaturase activity	NA
PtpAffx.24400.2.A1_at	A	A1TS	POPTR_0001s28680	POPTR_0001s28680 (11)	scaffold_1:27454484-27454898(-) (11)	NA	Q2N2K0	"Probable phytol kinase 3, chloroplastic"	AT5G58560.1	Phosphatidate cytidylyltransferase family protein 	LOC_Os01g61560.1	"phosphatidate cytidylyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24402.1.S1_at	A	A1TS	POPTR_0008s03630	POPTR_0008s03630 (11)	scaffold_8:1978087-1978425(+) (11)	NA	Q9SS47	Pumilio homolog 4	AT3G10360.1	pumilio 4 	LOC_Os02g57390.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr1g120450.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.24402.2.A1_at	A	A1MA	POPTR_0008s03630	POPTR_0008s03630 (9)	scaffold_8:1977590-1978065(-) (9)	NA	Q9SS47	Pumilio homolog 4	AT3G10360.1	pumilio 4 	LOC_Os02g57390.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr1g120450.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.24406.1.A1_a_at	A	A1TS	POPTR_0006s07750	POPTR_0006s07750 (11)	scaffold_6:5664217-5664440(-) (11)	NA	P93395	Proteasome subunit beta type-6	AT4G31300.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os02g53060.1	"peptidase, T1 family, putative, expressed"	Medtr3g132980.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.24406.2.A1_at	A	A1TS	POPTR_0006s07750	POPTR_0006s07750 (11)	scaffold_6:5664244-5664729(-) (11)	NA	P93395	Proteasome subunit beta type-6	AT4G31300.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os02g53060.1	"peptidase, T1 family, putative, expressed"	Medtr3g132980.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.24415.2.S1_a_at	A	A1TS	POPTR_0012s12040	POPTR_0012s12040 (11)	scaffold_12:12356961-12358097(+) (11)	NA	NA	NA	AT1G10180.1	BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1); Has 132 Blast hits to 132 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os07g38060.1	expressed protein	Medtr4g114640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24420.1.A1_a_at	A	A1TS	POPTR_0006s28110	POPTR_0006s28110 (11)	scaffold_6:25921228-25921671(-) (11)	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.24426.1.A1_at	A	A1MS	POPTR_0010s00630	POPTR_0010s00630 (10)	scaffold_10:337374-337787(+) (10)	NA	NA	NA	NA	NA	LOC_Os05g04650.1	expressed protein	Medtr2g052500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24429.1.S1_at	A	A1TS	POPTR_0002s08540	POPTR_0002s08540 (11)	scaffold_2:5968413-5969715(-) (11)	NA	NA	NA	AT1G44770.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits to 81 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g49490.1	expressed protein	Medtr1g037350.1	"Contains weak similarity to tail completion gi|5354213 from coliphage T4 gb|AF158101. ESTs gb|AA650799, gb|AA041054, gb|R29873, gb|AA712908 come from this gene., putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24429.2.S1_a_at	A	A2TS	POPTR_0002s08540	POPTR_0005s15780 (11)//POPTR_0002s08540 (11)	scaffold_2:5970175-5970636(-) (11)//scaffold_5:12381242-12381732(-) (11)	NA	NA	NA	AT1G44770.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits to 81 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g49490.1	expressed protein	Medtr1g037350.1	"Contains weak similarity to tail completion gi|5354213 from coliphage T4 gb|AF158101. ESTs gb|AA650799, gb|AA041054, gb|R29873, gb|AA712908 come from this gene., putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24429.2.S1_at	A	A1TS	POPTR_0002s08540	POPTR_0002s08540 (9)	scaffold_2:5970133-5970759(-) (9)	NA	NA	NA	AT1G44770.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits to 81 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g49490.1	expressed protein	Medtr1g037350.1	"Contains weak similarity to tail completion gi|5354213 from coliphage T4 gb|AF158101. ESTs gb|AA650799, gb|AA041054, gb|R29873, gb|AA712908 come from this gene., putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24431.1.A1_at	A	A2TS	POPTR_0369s00210	POPTR_0369s00210 (11)//POPTR_0005s04260 (10)	scaffold_369:8068-8970(+) (11)//scaffold_5:2865280-2866185(+) (10)	NA	Q9S9K7	Probable histone H2AXb	AT1G54690.1	gamma histone variant H2AX 	LOC_Os12g34510.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr7g130040.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.24438.2.A1_a_at	A	A1TS	POPTR_0014s03010	POPTR_0014s03010 (11)	scaffold_14:2461170-2467037(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24440.1.A1_at	A	A1TS	POPTR_0001s32300	POPTR_0001s32300 (11)	scaffold_1:30686296-30687276(+) (11)	NA	Q9ZTN2	ER lumen protein retaining receptor	AT3G25040.1	endoplasmic reticulum retention defective 2B 	LOC_Os04g30800.2	"ER lumen protein retaining receptor, putative, expressed"	Medtr4g135750.1	ER lumen protein retaining receptor 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
PtpAffx.24443.1.A1_at	A	A1TS	POPTR_0017s07450	POPTR_0017s07450 (11)	scaffold_17:5799460-5799940(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g073480.1	"Uncharacterized 24.1 kDa protein in LEF4-P33 intergenic region, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24456.1.A1_at	A	A1TS	POPTR_0002s00710	POPTR_0002s00710 (11)	scaffold_2:313372-315616(-) (11)	NA	NA	NA	AT5G03780.1	TRF-like 10 	LOC_Os11g06190.1	expressed protein	Medtr3g107080.1	"Zinc finger, FYVE/PHD-type; Homeodomain-related; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24469.1.A1_a_at	A	A2TS	POPTR_0016s02310	POPTR_0016s02310 (10)//POPTR_0006s02470 (9)	scaffold_16:1124669-1124724(+) (10)//scaffold_6:1620078-1620133(+) (9)	NA	Q66KH2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT3G22290.1	Endoplasmic reticulum vesicle transporter protein 	LOC_Os03g57100.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24469.1.A1_at	A	A1TS	POPTR_0016s02310	POPTR_0016s02310 (11)	scaffold_16:1124745-1125322(+) (11)	NA	Q66KH2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT3G22290.1	Endoplasmic reticulum vesicle transporter protein 	LOC_Os03g57100.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24469.2.S1_at	A	A1TS	POPTR_0006s02470	POPTR_0006s02470 (9)	scaffold_6:1620492-1620824(+) (9)	NA	Q66KH2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT3G22290.1	Endoplasmic reticulum vesicle transporter protein 	LOC_Os03g57100.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24469.3.S1_a_at	A	A2TS	POPTR_0006s02470	POPTR_0016s02310 (11)//POPTR_0006s02470 (11)	scaffold_16:1121256-1122266(+) (11)//scaffold_6:1616495-1617569(+) (11)	NA	Q66KH2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT3G22290.1	Endoplasmic reticulum vesicle transporter protein 	LOC_Os03g57100.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24469.3.S1_at	A	A1MS	POPTR_0016s02310	POPTR_0016s02310 (11)	scaffold_16:1121244-1122528(+) (11)	NA	Q66KH2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT3G22290.1	Endoplasmic reticulum vesicle transporter protein 	LOC_Os03g57100.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24476.1.S1_at	A	A1TS	POPTR_0007s09310	POPTR_0007s09310 (11)	scaffold_7:8668665-8669155(-) (11)	NA	Q05753	"Ankyrin repeat domain-containing protein, chloroplastic"	AT5G66055.1	ankyrin repeat protein 	LOC_Os03g04300.2	"ankyrin repeat domain containing protein, expressed"	Medtr5g021980.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24479.1.A1_at	A	A1TS	POPTR_0015s09870	POPTR_0015s09870 (11)	scaffold_15:10962011-10962402(+) (11)	NA	O15736	Protein tipD	AT5G50230.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g53510.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g138930.1	"Protein will die slowly, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24482.2.S1_s_at	A	A2TS	POPTR_0019s13710	POPTR_0063s00250 (11)//POPTR_0019s13710 (11)	scaffold_19:14568031-14568447(+) (11)//scaffold_63:53971-54387(+) (11)	NA	Q12955	Ankyrin-3	AT4G03500.1	Ankyrin repeat family protein 	LOC_Os07g34830.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g092930.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24491.1.S1_at	A	A1TS	POPTR_0010s09110	POPTR_0010s09110 (11)	scaffold_10:9960581-9962462(+) (11)	NA	O23320	Calmodulin-like protein 8	AT4G14640.1	calmodulin 8 	LOC_Os01g17190.1	"OsCam3 - Calmodulin, expressed"	Medtr7g034910.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24491.2.S1_at	A	A1TS	POPTR_0008s15910	POPTR_0008s15910 (11)	scaffold_8:10616828-10618571(-) (11)	NA	Q9LIK5	Calmodulin-like protein 11	AT3G22930.1	calmodulin-like 11 	LOC_Os05g41210.1	"OsCam2 - Calmodulin, expressed"	Medtr7g034910.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24494.1.A1_at	A	A1MS	POPTR_0001s46480	POPTR_0001s46480 (11)	scaffold_1:46848727-46849135(-) (11)	NA	Q99M63	WD40 repeat-containing protein SMU1	AT1G73720.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g21940.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g068820.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24499.1.S1_at	A	A1TS	POPTR_0013s13430	POPTR_0013s13430 (11)	scaffold_13:13907534-13908064(-) (11)	NA	NA	NA	AT4G28310.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g02530.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.245.1.S1_at	A	A2TS	POPTR_0002s24500	POPTR_0002s24520 (11)//POPTR_0002s24500 (11)	scaffold_2:21861681-21863470(-) (11)//scaffold_2:21876656-21878432(-) (11)	NA	A9GP90	Urease accessory protein ureG	AT2G34470.2	urease accessory protein G 	LOC_Os05g49050.1	"CobW/P47K family protein, putative, expressed"	Medtr4g165830.1	"Cobalamin synthesis protein, P47K "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.245.2.S1_a_at	A	A2TS	POPTR_0002s24500	POPTR_0002s24520 (11)//POPTR_0002s24500 (11)	scaffold_2:21863824-21864744(-) (11)//scaffold_2:21878786-21879695(-) (11)	NA	A9GP90	Urease accessory protein ureG	AT2G34470.2	urease accessory protein G 	LOC_Os05g49050.1	"CobW/P47K family protein, putative, expressed"	Medtr4g165830.1	"Cobalamin synthesis protein, P47K "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24503.1.S1_s_at	A	A1TS	POPTR_0010s00730	POPTR_0010s00730 (11)	scaffold_10:434554-434864(+) (11)	NA	Q8GUG7	DEAD-box ATP-dependent RNA helicase 50	AT3G06980.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g01830.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g163690.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.24504.1.A1_at	A	A1MS	POPTR_0010s08690	POPTR_0010s08690 (10)	scaffold_10:9579196-9579421(+) (10)	NA	NA	NA	AT4G14500.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os07g08760.1	"START domain containing protein, putative, expressed"	Medtr5g007180.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24507.1.A1_at	A	A1TS	POPTR_0004s04270	POPTR_0004s04270 (11)	scaffold_4:3061436-3061797(-) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24508.1.S1_a_at	A	A1TS	POPTR_0007s00440	POPTR_0007s00440 (11)	scaffold_7:159575-159907(-) (11)	NA	NA	NA	AT2G43950.1	chloroplast outer envelope protein 37 	LOC_Os02g39600.1	"outer envelope protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24508.2.A1_at	A	A1TS	POPTR_0017s04010	POPTR_0017s04010 (9)	scaffold_17:3015072-3015600(-) (9)	NA	NA	NA	AT2G43950.1	chloroplast outer envelope protein 37 	LOC_Os02g39600.1	"outer envelope protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24512.1.S1_at	A	A1TS	POPTR_0008s15070	POPTR_0008s15070 (10)	scaffold_8:10068622-10069231(-) (10)	NA	Q6NYY9	Transmembrane protein 49	AT4G14950.3	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24513.1.A1_at	A	A1TS	POPTR_0001s35480	POPTR_0001s35480 (11)	scaffold_1:33814508-33814650(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G50180.1	Protein kinase superfamily protein 	LOC_Os02g38080.2	"protein kinase domain containing protein, expressed"	Medtr3g114810.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.24513.2.A1_at	A	A1TS	POPTR_0017s10510	POPTR_0017s10510 (11)	scaffold_17:9964251-9964435(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G50180.1	Protein kinase superfamily protein 	LOC_Os02g38080.2	"protein kinase domain containing protein, expressed"	Medtr3g114810.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.24527.1.A1_at	A	A1TS	POPTR_0010s25990	POPTR_0010s25990 (11)	scaffold_10:21388746-21389974(+) (11)	NA	Q6GQN4	Protein FAM32A-like	AT1G16810.2	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os02g49530.2	"AGAP000425-PA, putative, expressed"	Medtr3g133530.1	"Protein of unknown function DUF1754, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24528.1.A1_at	A	A1MA	POPTR_0004s03850	POPTR_0004s03850 (11)	scaffold_4:2740302-2740863(-) (11)	NA	NA	NA	AT1G61100.1	"disease resistance protein (TIR class), putative "	LOC_Os03g64320.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24529.1.A1_at	A	A1TS	POPTR_0019s12170	POPTR_0019s12170 (10)	scaffold_19:13293635-13295657(-) (10)	NA	Q6S4P4	Transcription factor RF2b	AT3G58120.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g55150.1	"bZIP transcription factor domain containing protein, expressed"	Medtr2g132450.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.24537.1.A1_at	A	A1MS	POPTR_0013s08460	POPTR_0013s08460 (11)	scaffold_13:7626709-7627078(-) (11)	NA	Q6ZIB9	UPF0016 protein 4	AT5G36290.2	Uncharacterized protein family (UPF0016) 	LOC_Os11g28300.2	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr7g089540.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
PtpAffx.24542.1.A1_at	A	A1TS	POPTR_0014s00860	POPTR_0014s00860 (9)	scaffold_14:791159-793498(+) (11)	NA	O81004	GTP-binding protein At2g22870	AT2G22870.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g13000.2	"GTP-binding protein, putative, expressed"	Medtr3g132650.1	Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.24545.1.A1_at	A	A1TS	POPTR_0015s14360	POPTR_0015s14360 (11)	scaffold_15:13997694-13998208(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24548.1.S1_at	A	A1TS	POPTR_0006s22260	POPTR_0006s22260 (11)	scaffold_6:21302721-21306306(+) (11)	NA	Q6DDZ9	TLD domain-containing protein KIAA1609 homolog	AT5G06260.1	TLD-domain containing nucleolar protein 	LOC_Os12g06100.2	"TLD family protein, putative, expressed"	Medtr3g101690.2	TLDc 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24552.1.A1_at	A	A1TS	POPTR_0004s10430	POPTR_0004s10430 (9)	scaffold_4:8985754-8985792(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24552.1.A1_s_at	A	A1TS	POPTR_0004s10430	POPTR_0004s10430 (11)	scaffold_224:2721-2891(+) (11)//scaffold_4:8977992-8985850(-) (11)//scaffold_4:8985680-8986335(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24561.3.A1_a_at	A	A2TS	POPTR_0014s01880	POPTR_0014s01880 (11)//POPTR_0014s17570 (9)	scaffold_14:1714312-1714816(-) (11)//scaffold_14:13812612-13813104(-) (9)	NA	Q8W4C3	Poly(A)-specific ribonuclease PARN-like	AT3G25430.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g34160.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr7g046600.1	Ribonuclease CAF1 	NA	NA	GO:0005634|nucleus
PtpAffx.24562.1.A1_s_at	A	A1TS	POPTR_0003s14450	POPTR_0003s14450 (11)	scaffold_3:14534876-14535057(+) (11)	NA	Q8LAP8	Dof zinc finger protein DOF4.6	AT4G24060.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os04g47990.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.24564.2.A1_a_at	A	A1TS	POPTR_0005s02440	POPTR_0005s02440 (11)	scaffold_5:1567157-1568755(-) (11)	NA	NA	NA	AT5G27760.1	Hypoxia-responsive family protein 	LOC_Os02g37930.1	"hypoxia-responsive family protein, putative, expressed"	Medtr1g099920.1	Hypoxia induced protein conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24581.1.A1_at	A	A1TS	POPTR_0002s05810	POPTR_0002s05810 (11)	scaffold_2:3808421-3809998(-) (11)	NA	NA	NA	AT4G39235.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g51459.1	conserved hypothetical protein	Medtr3g005030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24581.1.A1_s_at	A	A1TS	POPTR_0002s05810	POPTR_0002s05810 (11)	scaffold_2:3807952-3809979(-) (11)	NA	NA	NA	AT4G39235.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g51459.1	conserved hypothetical protein	Medtr3g005030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24584.1.A1_at	A	A1MS	POPTR_0001s12470	POPTR_0001s12470 (11)	scaffold_1:9687288-9687792(+) (11)	NA	Q54V77	CTP synthase	AT1G30820.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr8g084050.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.24588.1.A1_at	A	A1TS	POPTR_0007s03840	POPTR_0007s03840 (11)	scaffold_7:2260784-2261740(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G09330.4	NAC domain containing protein 82 	LOC_Os05g35170.2	"no apical meristem protein, putative, expressed"	Medtr3g143500.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.24588.2.A1_a_at	A	A1TS	POPTR_0007s03840	POPTR_0007s03840 (11)	scaffold_7:2260886-2261854(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G09330.4	NAC domain containing protein 82 	LOC_Os05g35170.2	"no apical meristem protein, putative, expressed"	Medtr3g143500.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.24591.1.A1_at	A	A1TS	POPTR_0012s03020	POPTR_0012s03020 (11)	scaffold_12:2428482-2430036(+) (11)	NA	Q9UHA2	SS18-like protein 2	AT4G00850.1	GRF1-interacting factor 3 	LOC_Os12g31350.1	"SSXT protein, putative, expressed"	Medtr1g094100.1	SSXT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24592.1.A1_at	A	A1TS	POPTR_0007s04305	POPTR_0007s04305 (9)	scaffold_7:2602924-2603433(-) (11)	NA	NA	NA	AT5G64010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g142970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24602.2.S1_a_at	A	A1TS	POPTR_0014s16720	POPTR_0014s16720 (10)	scaffold_14:12793360-12793393(+) (10)	NA	Q43088	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT3G07670.1	Rubisco methyltransferase family protein 	LOC_Os02g49326.1	"SET domain-containing protein, putative, expressed"	Medtr3g106630.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24602.2.S1_at	A	A1TS	POPTR_0014s16720	POPTR_0014s16720 (11)	scaffold_14:12792670-12793018(+) (11)	NA	Q43088	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT3G07670.1	Rubisco methyltransferase family protein 	LOC_Os02g49326.1	"SET domain-containing protein, putative, expressed"	Medtr3g106630.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24602.3.A1_at	A	A1MS	POPTR_0014s16720	POPTR_0014s16720 (10)	scaffold_14:12793750-12793995(+) (10)	NA	Q43088	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT3G07670.1	Rubisco methyltransferase family protein 	LOC_Os02g49326.1	"SET domain-containing protein, putative, expressed"	Medtr3g106630.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24602.4.A1_at	A	A1TS	POPTR_0014s16720	POPTR_0014s16720 (10)	scaffold_14:12793073-12793374(+) (10)	NA	Q43088	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT3G07670.1	Rubisco methyltransferase family protein 	LOC_Os02g49326.1	"SET domain-containing protein, putative, expressed"	Medtr3g106630.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24605.1.S1_a_at	A	A1TS	POPTR_0015s01350	POPTR_0015s01350 (11)	scaffold_15:835179-835991(-) (11)	POPTR_0012s02430 (6)	P58223	KH domain-containing protein At4g18375	AT5G53060.1	RNA-binding KH domain-containing protein 	LOC_Os06g23460.1	"KH domain containing protein, putative, expressed"	Medtr3g123610.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.24613.1.A1_s_at	A	A1TS	POPTR_0013s13250	POPTR_0013s13250 (11)	scaffold_13:13786215-13786687(-) (11)	NA	Q9Y5Q9	General transcription factor 3C polypeptide 3	AT1G17680.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os11g16540.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr4g101240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24616.1.A1_at	A	A1TS	POPTR_0005s12310	POPTR_0005s12310 (11)	scaffold_5:9085884-9086386(+) (11)	NA	NA	NA	AT1G80040.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1). 	LOC_Os09g03090.1	expressed protein	Medtr4g005650.1	Ubiquitin system component Cue; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24618.1.A1_at	A	A1TS	POPTR_0007s04740	POPTR_0007s04740 (11)	scaffold_7:2944538-2945209(-) (11)	NA	Q5N8X6	Beta-galactosidase 3	AT5G63810.1	beta-galactosidase 10 	LOC_Os01g65460.2	"beta-galactosidase precursor, putative, expressed"	Medtr3g142650.1	Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.2463.1.A1_a_at	A	A1TS	POPTR_0004s09150	POPTR_0004s09150 (11)	scaffold_4:7665053-7665352(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G23530.1	carboxyesterase 18 	LOC_Os07g44890.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr6g071230.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.24664.1.A1_at	A	A1TS	POPTR_0015s13070	POPTR_0015s13070 (10)	scaffold_15:13184611-13186153(+) (11)	NA	Q9HFF2	Uncharacterized protein C683.02c	AT5G52380.1	VASCULAR-RELATED NAC-DOMAIN 6 	LOC_Os04g46920.1	"zinc knuckle domain containing protein, expressed"	Medtr1g127130.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.24664.2.A1_at	A	A1TS	POPTR_0012s13145	POPTR_0012s13145 (11)	scaffold_12:13429541-13430838(+) (11)	NA	Q9HFF2	Uncharacterized protein C683.02c	AT5G52380.1	VASCULAR-RELATED NAC-DOMAIN 6 	LOC_Os04g46920.1	"zinc knuckle domain containing protein, expressed"	Medtr1g127130.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.24672.2.A1_a_at	A	A1TS	POPTR_0002s26295	POPTR_0002s26295 (11)	scaffold_2:23266895-23267655(-) (11)	NA	P32518	Deoxyuridine 5'-triphosphate nucleotidohydrolase	AT3G46940.1	DUTP-PYROPHOSPHATASE-LIKE 1 	LOC_Os03g46640.1	"deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed"	NA	NA	GO:0046080|dUTP metabolic process||GO:0044281|small molecule metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.24677.1.A1_at	A	A1MS	POPTR_0001s43620	POPTR_0001s43620 (9)	scaffold_1:43820154-43820401(-) (11)//scaffold_1:45325304-45325551(-) (9)	NA	Q9FFT9	DEAD-box ATP-dependent RNA helicase 32	AT5G54910.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os07g33340.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g099850.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.24689.1.S1_at	A	A1TS	POPTR_0002s06270	POPTR_0002s06270 (11)	scaffold_2:4193815-4195003(+) (11)	NA	O50044	2-dehydro-3-deoxyphosphooctonate aldolase	AT1G79500.4	Aldolase-type TIM barrel family protein 	LOC_Os12g10784.2	"2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed"	Medtr7g092790.1	2-dehydro-3-deoxyphosphooctonate aldolase 	GO:0009058|biosynthetic process	NA	NA
PtpAffx.2469.1.A1_at	A	A1TS	POPTR_0005s07720	POPTR_0005s07720 (11)	scaffold_5:5290766-5291439(+) (11)	NA	Q43011	Asparagine synthetase [glutamine-hydrolyzing]	AT5G10240.1	asparagine synthetase 3 	LOC_Os06g15420.1	"asparagine synthetase, putative, expressed"	Medtr3g101710.1	Asparagine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006529|asparagine biosynthetic process	GO:0004066|asparagine synthase (glutamine-hydrolyzing) activity	NA
PtpAffx.24693.1.S1_at	A	A1TS	POPTR_0002s17100	POPTR_0002s17100 (11)	scaffold_2:12884689-12885235(-) (11)	NA	Q9FFQ1	DEAD-box ATP-dependent RNA helicase 31	AT5G63630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g43120.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.24696.1.A1_at	A	A1TS	POPTR_0005s08660	POPTR_0005s08660 (11)	scaffold_5:6025125-6025733(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24700.1.A1_at	A	A1TS	POPTR_0008s14490	POPTR_0008s14490 (11)	scaffold_8:9624246-9624718(+) (11)	NA	O04630	"Threonyl-tRNA synthetase, mitochondrial"	AT5G26830.1	Threonyl-tRNA synthetase 	LOC_Os08g19850.1	"threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed"	Medtr5g035990.1	"tRNA synthetase, class II (G, H, P and S); Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.24704.1.S1_at	A	A1TS	POPTR_0005s21860	POPTR_0005s21860 (11)	scaffold_5:20916439-20917921(-) (11)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.24709.1.A1_at	A	A1TS	POPTR_0010s16280	POPTR_0010s16280 (11)	scaffold_10:15249447-15249969(+) (11)	NA	Q9GYZ0	Kinesin-like protein KIF15	AT3G17360.1	phragmoplast orienting kinesin 1 	LOC_Os12g39980.1	"kinesin motor domain containing protein, putative, expressed"	Medtr8g134270.1	"Peptidase S26A, signal peptidase I "	GO:0007018|microtubule-based movement||GO:0016032|viral reproduction	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.24713.1.A1_at	A	A1TS	POPTR_0011s09670	POPTR_0011s09670 (11)	scaffold_11:12063254-12063378(-) (11)	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
PtpAffx.24713.1.A1_s_at	A	A2TS	POPTR_0007s09750	POPTR_0011s09670 (11)//POPTR_0007s09750 (11)	scaffold_11:12063437-12064728(-) (11)//scaffold_7:9274552-9275865(-) (11)	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
PtpAffx.24713.2.A1_at	A	A1TS	POPTR_0007s09750	POPTR_0007s09750 (11)	scaffold_7:9274353-9275941(-) (11)	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
PtpAffx.24719.1.A1_at	A	A1TS	POPTR_0014s10090	POPTR_0014s10090 (9)	scaffold_14:7576918-7577418(+) (9)	NA	Q76LC6	RNA-binding protein 24	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	CU179634_3.1	RNA-binding region RNP-1 (RNA recognition motif) CU179634.6 7913-3383 H EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.2472.1.S1_at	A	A1TS	POPTR_0005s23740	POPTR_0005s23740 (11)	scaffold_5:22494828-22496427(-) (11)	NA	P23525	"37 kDa inner envelope membrane protein, chloroplastic"	AT3G63410.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g08200.1	"methyltransferase domain containing protein, putative, expressed"	Medtr1g083540.1	"37 kDa inner envelope membrane protein, chloroplast precursor, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.2472.2.S1_s_at	A	A1TS	POPTR_0002s04790	POPTR_0002s04790 (11)	scaffold_2:3021521-3021600(+) (11)	NA	P23525	"37 kDa inner envelope membrane protein, chloroplastic"	AT3G63410.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g08200.1	"methyltransferase domain containing protein, putative, expressed"	Medtr1g083540.1	"37 kDa inner envelope membrane protein, chloroplast precursor, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.24725.1.A1_s_at	A	A1TS	POPTR_0002s11490	POPTR_0002s11490 (11)	scaffold_2:8533395-8533795(-) (11)	NA	Q9ZQB9	Probable xyloglucan glycosyltransferase 12	AT4G07960.1	Cellulose-synthase-like C12 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24739.1.A1_s_at	A	A1TS	POPTR_0012s05460	POPTR_0012s05460 (11)	scaffold_12:5113726-5115377(-) (11)	NA	Q24K12	G patch domain-containing protein 1	AT5G23080.1	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 	LOC_Os06g29400.1	"surp module family protein, putative, expressed"	Medtr8g115710.1	SWAP/Surp 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.24746.1.A1_at	A	A1TS	POPTR_0018s01900	POPTR_0018s01900 (11)	scaffold_18:1728387-1728725(+) (11)	NA	Q9LFP1	Vesicle-associated membrane protein 713	AT5G11150.1	vesicle-associated membrane protein 713 	LOC_Os06g07780.1	"vesicle-associated membrane protein, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.24751.1.A1_at	A	A1TS	POPTR_0016s12230	POPTR_0016s12230 (11)	scaffold_16:11571401-11571708(-) (11)	NA	NA	NA	AT2G40070.1	BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g04880.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g025430.1	"En/Spm-like transposon protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24755.1.A1_at	A	A1TS	POPTR_0004s17520	POPTR_0004s17520 (11)	scaffold_4:17690992-17691666(-) (11)	NA	NA	NA	AT4G32090.1	"Beta-1,3-N-Acetylglucosaminyltransferase family protein "	LOC_Os02g30780.1	"LGC1, putative, expressed"	Medtr2g080840.1	"Glycosyl transferase, family 31 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24775.1.A1_x_at	A	A1TS	POPTR_0001s24760	POPTR_0001s24760 (11)	scaffold_1:24014937-24015396(-) (11)	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24775.2.A1_s_at	A	A1TS	POPTR_0009s03710	POPTR_0009s03710 (11)	scaffold_9:4301282-4301358(-) (11)	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24775.2.A1_x_at	A	A1TS	POPTR_0009s03710	POPTR_0009s03710 (11)	scaffold_9:4301238-4301790(-) (11)	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24776.2.A1_a_at	A	A1TS	POPTR_0009s03660	POPTR_0009s03660 (10)	scaffold_9:4275466-4275838(+) (10)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.24776.3.S1_at	A	A1TS	POPTR_0001s24720	POPTR_0001s24720 (11)	scaffold_1:23967149-23967595(+) (11)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.2478.2.S1_a_at	A	A1TS	POPTR_0019s10560	POPTR_0019s10560 (11)	scaffold_19:12107770-12108271(+) (11)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.24780.1.S1_at	A	A1TS	POPTR_0016s06710	POPTR_0016s06710 (11)	scaffold_16:4530395-4530860(-) (11)	NA	NA	NA	AT2G35900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g56470.1	"mal d 1-associated protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24782.1.A1_at	A	A1TS	POPTR_0008s03650	POPTR_0008s03650 (11)	scaffold_8:1981010-1981145(-) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G04250.2	Cysteine proteinases superfamily protein 	LOC_Os03g64219.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g120470.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24783.1.A1_at	A	A1MS	POPTR_0009s10760	POPTR_0009s10760 (11)	scaffold_9:9156099-9156591(-) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT1G49660.1	carboxyesterase 5 	LOC_Os09g28620.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.24787.1.S1_a_at	A	A1TS	POPTR_0009s09150	POPTR_0009s09150 (11)	scaffold_9:8187919-8188175(+) (11)	NA	NA	NA	AT1G61730.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os09g27850.1	"transcription regulator, putative, expressed"	Medtr3g093150.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24787.2.S1_a_at	A	A1TS	POPTR_0009s09150	POPTR_0009s09150 (11)	scaffold_9:8186883-8188161(+) (11)	NA	NA	NA	AT1G61730.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os09g27850.1	"transcription regulator, putative, expressed"	Medtr3g093150.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24788.1.A1_at	A	A1MS	POPTR_0017s07870	POPTR_0017s07870 (11)	scaffold_17:6181330-6181802(+) (11)	NA	O05413	Probable nitronate monooxygenase	AT5G64250.2	Aldolase-type TIM barrel family protein 	LOC_Os08g37874.1	"2-nitropropane dioxygenase family, putative, expressed"	Medtr3g092250.1	"Triosephosphate isomerase; 2-nitropropane dioxygenase, NPD "	GO:0055114|oxidation reduction	GO:0018580|2-nitropropane dioxygenase activity	NA
PtpAffx.24794.1.A1_s_at	A	A1TS	POPTR_0002s16450	POPTR_0002s16450 (11)	scaffold_2:12317140-12317283(+) (11)	NA	NA	NA	AT4G01290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1797 Blast hits to 1352 proteins in 216 species: Archae - 0; Bacteria - 202; Metazoa - 850; Fungi - 267; Plants - 109; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink). 	LOC_Os06g01680.3	expressed protein	Medtr7g088510.1	ABC transporter related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24794.2.S1_at	A	A1TS	POPTR_0002s18070	POPTR_0002s18070 (11)	scaffold_2:13939481-13940022(+) (11)	NA	NA	NA	AT4G01410.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os05g30490.1	harpin-induced protein 1 domain containing protein	Medtr7g146140.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.24794.3.A1_at	A	A1TS	POPTR_0014s10170	POPTR_0014s10170 (10)	scaffold_14:7624476-7624584(+) (10)	NA	NA	NA	AT4G01410.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os05g30490.1	harpin-induced protein 1 domain containing protein	Medtr7g146140.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.24797.1.S1_s_at	A	A1TS	POPTR_0006s23250	POPTR_0006s23250 (11)	scaffold_6:22030571-22031032(-) (11)	NA	NA	NA	AT3G58090.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os01g61890.4	"AT hook motif family protein, expressed"	AC235022_9.1	Tudor AC235022.1 50838-49664 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24802.1.A1_at	A	A1TS	POPTR_0019s05580	POPTR_0019s05580 (11)	scaffold_19:5940110-5945555(+) (11)	NA	Q0IHH9	Speckle-type POZ protein B	AT3G03740.1	BTB-POZ and MATH domain 4 	LOC_Os03g57854.1	"MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr5g094610.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.24824.1.A1_at	A	A1TS	POPTR_0008s21080	POPTR_0008s21080 (11)	scaffold_8:15199852-15200955(+) (11)	POPTR_0010s00530 (6)	Q5EBF1	Cytosolic purine 5'-nucleotidase	AT5G48960.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os01g14810.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr8g133970.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24826.1.S1_s_at	A	A1TS	POPTR_0002s05050	POPTR_0002s05050 (11)	scaffold_2:3251906-3252446(-) (11)	NA	NA	NA	AT1G03080.1	kinase interacting (KIP1-like) family protein 	LOC_Os03g43684.1	"KIP1, putative, expressed"	Medtr1g083940.1	KIP1-like 	NA	NA	GO:0016020|membrane
PtpAffx.24831.1.A1_at	A	A1TS	POPTR_0006s03620	POPTR_0006s03620 (11)	scaffold_6:2371694-2371973(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24839.1.A1_at	A	A1TS	POPTR_0016s02110	POPTR_0016s02110 (11)	scaffold_16:1017986-1018477(+) (11)	NA	Q9SY02	Pentatricopeptide repeat-containing protein At4g02750	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g19260.1	"tetratricopeptide-like helical, putative, expressed"	Medtr5g023020.1	Phospholipase D/Transphosphatidylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24842.1.S1_at	A	A1TS	POPTR_0007s06040	POPTR_0007s06040 (11)	scaffold_7:4194144-4194577(+) (11)	NA	Q9UKV3	Apoptotic chromatin condensation inducer in the nucleus	AT4G39680.2	SAP domain-containing protein 	LOC_Os03g26630.2	"SAP domain containing protein, expressed"	Medtr3g101020.1	Borrelia outer surface lipoprotein; DNA-binding SAP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.24858.1.A1_at	A	A1TS	POPTR_0018s09890	POPTR_0018s09890 (10)	scaffold_18:10939615-10941489(-) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os08g12430.1	"VERNALIZATION-INSENSITIVE, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24863.1.A1_at	A	A1TS	POPTR_0018s04000	POPTR_0018s04000 (10)	scaffold_18:3423581-3423751(-) (10)	NA	Q641Z5	Cation transport regulator-like protein 2	AT4G31290.1	ChaC-like family protein 	LOC_Os02g26700.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr3g132970.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24863.1.A1_s_at	A	A1TS	POPTR_0018s04000	POPTR_0018s04000 (11)	scaffold_18:3423394-3423993(-) (11)	NA	Q641Z5	Cation transport regulator-like protein 2	AT4G31290.1	ChaC-like family protein 	LOC_Os02g26700.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr3g132970.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24864.1.A1_at	A	A1MS	POPTR_0003s14890	POPTR_0003s14890 (10)	scaffold_3:14838971-14839427(-) (10)	NA	NA	NA	AT1G80245.3	Spc97 / Spc98 family of spindle pole body (SBP) component 	NA	NA	Medtr8g011930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24871.1.A1_at	A	A1TS	POPTR_0016s00530	POPTR_0016s00530 (11)	scaffold_16:173348-173818(-) (11)	NA	Q9FMF5	Root phototropism protein 3	AT5G47800.1	Phototropic-responsive NPH3 family protein 	LOC_Os09g09370.1	"BTBN18 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	AC233669_17.1	NPH3 AC233669.2 72476-75261 E EGN_Mt090430 200	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.24872.1.A1_at	A	A1TS	POPTR_0001s14360	POPTR_0001s14360 (11)	scaffold_1:11281255-11282967(+) (11)	NA	Q8R1S0	Ubiquinone biosynthesis monooxygenase COQ6	AT3G24200.2	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g62260.1	"FAD binding domain containing protein, expressed"	Medtr2g071190.2	Aromatic-ring hydroxylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24885.1.A1_a_at	A	A1TS	POPTR_0006s06650	POPTR_0006s06650 (11)	scaffold_6:4822940-4823054(-) (11)	NA	Q07488	Blue copper protein	AT5G20230.1	blue-copper-binding protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.24886.1.A1_at	A	A1TS	POPTR_0008s08160	POPTR_0008s08160 (11)	scaffold_8:5085259-5085949(+) (11)	NA	Q9LTW0	ALA-interacting subunit 1	AT3G12740.1	ALA-interacting subunit 1 	LOC_Os06g45430.1	"cell cycle control protein, putative, expressed"	Medtr2g122470.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.2489.1.A1_at	A	A1TS	POPTR_0001s15440	POPTR_0001s15440 (11)	scaffold_1:12278541-12279053(+) (11)	NA	Q20390	Palmitoyl-protein thioesterase 1	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g41340.1	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008474|palmitoyl-(protein) hydrolase activity	NA
PtpAffx.2489.2.S1_at	A	A1TS	POPTR_0003s07790	POPTR_0003s07790 (11)	scaffold_3:9322099-9322802(-) (11)	NA	Q20390	Palmitoyl-protein thioesterase 1	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g01150.1	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008474|palmitoyl-(protein) hydrolase activity	NA
PtpAffx.2489.2.S1_s_at	A	A2TS	POPTR_0001s15440	POPTR_0001s15440 (11)//POPTR_0003s07790 (11)	scaffold_1:12274915-12277477(+) (11)//scaffold_3:9318069-9320378(-) (11)	NA	Q20390	Palmitoyl-protein thioesterase 1	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g41340.1	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008474|palmitoyl-(protein) hydrolase activity	NA
PtpAffx.2489.3.A1_s_at	A	A1TS	POPTR_0003s07790	POPTR_0003s07790 (11)	scaffold_3:9316733-9316960(-) (11)	NA	Q20390	Palmitoyl-protein thioesterase 1	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g01150.1	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008474|palmitoyl-(protein) hydrolase activity	NA
PtpAffx.24891.1.S1_at	A	A1TS	POPTR_0012s11000	POPTR_0012s11000 (11)	scaffold_12:11635668-11636206(+) (11)	NA	Q5S1W2	Protein BONZAI 2	AT5G07300.1	Calcium-dependent phospholipid-binding Copine family protein 	LOC_Os02g32160.1	"copine, putative, expressed"	Medtr7g139920.1	"C2; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24898.1.A1_at	A	A1TS	POPTR_0015s07320	POPTR_0015s07320 (11)	scaffold_15:8490420-8491976(-) (11)	NA	NA	NA	AT5G61390.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os10g26730.1	"exonuclease, putative, expressed"	Medtr4g140330.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.1.S1_x_at	A	A2TS	POPTR_0013s10380	POPTR_0013s10380 (11)//POPTR_0013s10370 (9)	scaffold_13:10512360-10512825(-) (9)//scaffold_13:10553074-10553627(-) (11)	NA	Q07469	Bark storage protein A	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.249.10.S1_x_at	A	A1TS	POPTR_0008s05470	POPTR_0008s05470 (11)	scaffold_8:3164376-3164918(-) (11)	NA	P09189	Heat shock cognate 70 kDa protein	AT5G02500.1	heat shock cognate protein 70-1 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.100.A1_s_at	A	A1TS	POPTR_0005s21740	POPTR_0005s21740 (11)	scaffold_5:20847752-20848013(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.249.100.A1_x_at	A	A1TS	POPTR_0005s21740	POPTR_0005s21740 (11)	scaffold_5:20847588-20847932(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.249.101.A1_s_at	A	A1TS	POPTR_0010s17020	POPTR_0010s17020 (11)	scaffold_10:15776226-15776392(+) (11)	NA	Q9AXJ4	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
PtpAffx.249.101.A1_x_at	A	A1TS	POPTR_0010s17020	POPTR_0010s17020 (11)	scaffold_10:15775587-15776494(+) (11)	NA	Q9AXJ4	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
PtpAffx.249.103.A1_x_at	A	A1TS	POPTR_0002s10130	POPTR_0002s10130 (11)	scaffold_2:7286772-7287273(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.105.A1_at	A	A1TS	POPTR_0008s12550	POPTR_0008s12550 (11)	scaffold_8:8133765-8134117(+) (11)	NA	P17614	"ATP synthase subunit beta, mitochondrial"	AT5G08680.1	ATP synthase alpha/beta family protein 	LOC_Os01g49190.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.249.106.A1_at	A	A1TS	POPTR_0009s05720	POPTR_0009s05720 (11)	scaffold_9:5745478-5745785(+) (11)	NA	P31336	"Photosystem II 5 kDa protein, chloroplastic"	AT1G51400.1	Photosystem II 5 kD protein 	NA	NA	Medtr3g029860.1	"Photosystem II 5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.106.A1_x_at	A	A1TS	POPTR_0009s05720	POPTR_0009s05720 (11)	scaffold_9:5745478-5745888(+) (11)	NA	P31336	"Photosystem II 5 kDa protein, chloroplastic"	AT1G51400.1	Photosystem II 5 kD protein 	NA	NA	Medtr3g029860.1	"Photosystem II 5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.107.A1_x_at	A	A1TS	POPTR_0005s26080	POPTR_0005s26080 (11)	scaffold_5:24200159-24200628(+) (11)	NA	P27495	"Chlorophyll a-b binding protein 40, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.249.108.A1_x_at	A	A1TS	POPTR_0008s03950	POPTR_0008s03950 (11)	scaffold_8:2178691-2180480(+) (11)	NA	P43286	Aquaporin PIP2-1	AT3G53420.2	plasma membrane intrinsic protein 2A 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.249.110.A1_a_at	A	A1TS	POPTR_0003s06930	POPTR_0003s06930 (11)	scaffold_3:8490080-8490159(-) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.249.110.A1_x_at	A	A1TS	POPTR_0003s06930	POPTR_0003s06930 (11)	scaffold_3:8490080-8490190(-) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.249.113.S1_at	A	A1TS	POPTR_0005s02410	POPTR_0005s02410 (11)	scaffold_5:1550956-1552740(-) (11)	NA	NA	NA	AT1G56220.3	Dormancy/auxin associated family protein 	LOC_Os03g22270.1	"auxin-repressed protein, putative, expressed"	Medtr7g138650.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.117.A1_at	A	A1TS	POPTR_0004s22450	POPTR_0004s22450 (11)	scaffold_4:21344091-21344156(-) (11)	NA	NA	NA	AT5G60800.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g05750.1	"heavy-metal-associated domain-containing protein, putative, expressed"	AC235487_8.1	Heavy metal transport/detoxification protein AC235487.1 51831-53181 H EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.249.118.S1_s_at	A	A1TS	POPTR_0001s15850	POPTR_0001s15850 (11)	scaffold_1:12689510-12689660(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT4G12500.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46810.1	"LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106110.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.119.S1_at	A	A1TS	POPTR_0012s00420	POPTR_0012s00420 (10)	scaffold_12:140822-141615(+) (10)	NA	Q9FLU1	DNA-binding protein BIN4	AT5G24630.2	double-stranded DNA binding 	LOC_Os02g05440.1	expressed protein	Medtr3g122060.1	"BIN4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.121.A1_a_at	A	A1TS	POPTR_0002s10130	POPTR_0002s10130 (11)	scaffold_2:7286702-7286797(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.124.A1_x_at	A	A1TS	POPTR_0002s19710	POPTR_0002s19710 (11)	scaffold_2:15653677-15654145(+) (11)	NA	A6Q0K5	Calvin cycle protein CP12	AT3G62410.1	CP12 domain-containing protein 2 	LOC_Os01g19740.1	"calvin cycle protein CP12, putative, expressed"	Medtr1g106710.1	Protein of unknown function CP12 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.127.A1_at	A	A1TS	POPTR_0003s07690	POPTR_0003s07690 (10)	scaffold_3:9211805-9212389(+) (10)	NA	O65202	Peroxisomal acyl-coenzyme A oxidase 1	AT4G16760.1	acyl-CoA oxidase 1 	LOC_Os06g01390.1	"acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed"	Medtr8g105410.1	Acyl-CoA dehydrogenase C-terminal-like; 	GO:0006635|fatty acid beta-oxidation||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity||GO:0003997|acyl-CoA oxidase activity	GO:0005777|peroxisome
PtpAffx.249.130.A1_at	A	A1TS	POPTR_0009s11290	POPTR_0009s11290 (11)	scaffold_9:9440064-9440690(+) (11)	NA	NA	NA	AT3G50830.1	cold-regulated 413-plasma membrane 2 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.134.S1_s_at	A	A1TS	POPTR_0001s23190	POPTR_0001s23190 (11)	scaffold_1:22449809-22450216(-) (11)	NA	Q84WM9	Elongation factor 1-beta 1	AT5G12110.1	"Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6 "	LOC_Os07g46750.1	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.249.137.S1_s_at	A	A1TS	POPTR_0001s44440	POPTR_0001s44440 (9)	scaffold_1:44861053-44861085(+) (9)	NA	Q8H159	Polyubiquitin 10	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.139.S1_a_at	A	A1TS	POPTR_0014s08460	POPTR_0014s08460 (11)	scaffold_14:6288829-6289364(-) (11)	NA	Q9LMM6	"Protein BPS1, chloroplastic"	AT2G46080.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.144.A1_a_at	A	A2TS	POPTR_0008s04560	POPTR_0010s22290 (11)//POPTR_0008s04560 (11)	scaffold_10:19247724-19247959(-) (11)//scaffold_8:2602574-2602809(+) (11)	NA	O80362	"50S ribosomal protein L10, chloroplastic"	AT5G13510.1	Ribosomal protein L10 family protein 	LOC_Os03g17580.1	"ribosomal protein L10, putative, expressed"	Medtr8g146080.1	Ribosomal protein L10 	GO:0042254|ribosome biogenesis	NA	GO:0005622|intracellular
PtpAffx.249.144.A1_at	A	A1TS	POPTR_0010s22290	POPTR_0010s22290 (11)	scaffold_10:19247531-19248005(-) (11)	NA	O80362	"50S ribosomal protein L10, chloroplastic"	AT5G13510.1	Ribosomal protein L10 family protein 	LOC_Os03g17580.1	"ribosomal protein L10, putative, expressed"	Medtr8g146080.1	Ribosomal protein L10 	GO:0042254|ribosome biogenesis	NA	GO:0005622|intracellular
PtpAffx.249.146.A1_a_at	A	A2TS	POPTR_0001s00560	POPTR_0001s00560 (11)//POPTR_0003s10940 (11)	scaffold_1:451925-452618(+) (11)//scaffold_3:11792062-11792750(-) (11)	NA	A7J1T2	Mitogen-activated protein kinase kinase kinase 13-A	AT2G35050.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os07g25680.1	"protein kinase domain containing protein, expressed"	Medtr1g111680.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.148.A1_a_at	A	A1TS	POPTR_0001s23720	POPTR_0001s23720 (11)	scaffold_1:23125255-23125609(+) (11)	NA	NA	NA	AT2G44360.1	unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g38080.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.15.A1_x_at	A	A1TS	POPTR_0004s09910	POPTR_0004s09910 (11)	scaffold_4:8433876-8434633(-) (11)	NA	P24007	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g19381.1	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.1	"Ribulose bisphosphate carboxylase, small chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
PtpAffx.249.152.A1_s_at	A	A3MA	POPTR_0712s00200	POPTR_0712s00200 (11)//POPTR_0003s00830 (10)//POPTR_0003s00820 (10)	scaffold_1110:485-547(-) (11)//scaffold_16:9683868-9683930(+) (11)//scaffold_19:13477739-13477801(-) (11)//scaffold_3:659408-659470(+) (10)//scaffold_3:671225-671287(+) (10)//scaffold_712:3445-3507(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.159.A1_a_at	A	A1MS	POPTR_0004s09910	POPTR_0004s09910 (11)	scaffold_4:8434129-8434234(-) (11)	NA	P24007	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g19381.1	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.1	"Ribulose bisphosphate carboxylase, small chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
PtpAffx.249.160.S1_s_at	A	A1TS	POPTR_0001s23820	POPTR_0001s23820 (11)	scaffold_1:23206903-23206986(-) (11)	NA	NA	NA	AT2G44310.1	Calcium-binding EF-hand family protein 	LOC_Os03g29770.1	"EF hand family protein, expressed"	Medtr7g026040.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.161.A1_a_at	A	A2TA	POPTR_0012s11730	POPTR_0012s11730 (11)//POPTR_0012s11740 (10)	scaffold_12:12058871-12058963(+) (11)//scaffold_12:12068087-12068179(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.164.A1_s_at	A	A1TS	POPTR_0002s05660	POPTR_0002s05660 (11)	scaffold_2:3726107-3726418(+) (11)	NA	Q9SLQ8	"Oxygen-evolving enhancer protein 2, chloroplastic"	AT1G06680.1	photosystem II subunit P-1 	LOC_Os07g04840.1	"PsbP, putative, expressed"	Medtr5g097510.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.249.165.A1_at	A	A1TS	POPTR_0014s08160	POPTR_0014s08160 (11)	scaffold_14:6055822-6056318(-) (11)	NA	O23066	Cytochrome P450 86A2	AT2G45970.1	"cytochrome P450, family 86, subfamily A, polypeptide 8 "	LOC_Os02g44654.2	"cytochrome P450, putative, expressed"	Medtr8g031910.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.249.174.S1_a_at	A	A2TS	POPTR_0013s11720	POPTR_0019s11310 (11)//POPTR_0013s11720 (11)	scaffold_13:12378709-12381847(+) (11)//scaffold_19:12638362-12641136(+) (11)	NA	P51412	"50S ribosomal protein L21, chloroplastic"	AT1G35680.1	Ribosomal protein L21 	LOC_Os02g15900.1	"50S ribosomal protein L21, chloroplast precursor, putative, expressed"	AC235094_7.1	Ribosomal protein L21 AC235094.1 33114-37272 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.249.174.S1_at	A	A1TS	POPTR_0019s11310	POPTR_0019s11310 (11)	scaffold_19:12640297-12641323(+) (11)	NA	P51412	"50S ribosomal protein L21, chloroplastic"	AT1G35680.1	Ribosomal protein L21 	LOC_Os02g15900.1	"50S ribosomal protein L21, chloroplast precursor, putative, expressed"	AC235094_7.1	Ribosomal protein L21 AC235094.1 33114-37272 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.249.179.S1_at	A	A1TS	POPTR_0013s02900	POPTR_0013s02900 (11)	scaffold_13:1751887-1752172(-) (11)	NA	Q9SW09	40S ribosomal protein S10-1	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.1	"Plectin/S10, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.18.A1_x_at	A	A1TS	POPTR_0017s06450	POPTR_0017s06450 (10)	scaffold_17:4942218-4942432(-) (10)	NA	P0CG84	Polyubiquitin (Fragment)	AT4G05320.6	polyubiquitin 10 	LOC_Os05g42424.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.2	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.182.S1_s_at	A	A1TS	POPTR_0017s01860	POPTR_0017s01860 (11)	scaffold_17:1360899-1362767(+) (11)	NA	Q0CGL5	Nascent polypeptide-associated complex subunit beta	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.187.S1_at	A	A1TS	POPTR_0002s06590	POPTR_0002s06590 (9)	scaffold_2:4396997-4397232(-) (9)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.249.19.A1_at	A	A1TS	POPTR_0014s14740	POPTR_0014s14740 (11)	scaffold_14:10824613-10824818(+) (11)	NA	Q8W453	Putative lipid-transfer protein DIR1	AT5G48490.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g18750.1	"LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g045700.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.19.A1_x_at	A	A1TS	POPTR_0014s14740	POPTR_0014s14740 (11)	scaffold_14:10824602-10824817(+) (11)	NA	Q8W453	Putative lipid-transfer protein DIR1	AT5G48490.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g18750.1	"LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g045700.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.190.A1_at	A	A1MS	POPTR_0014s15960	POPTR_0014s15960 (10)	scaffold_14:12030663-12030738(+) (10)	NA	Q07511	"Formate dehydrogenase, mitochondrial"	AT5G14780.1	formate dehydrogenase 	LOC_Os06g29180.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.249.194.S1_at	A	A1TS	POPTR_0001s35660	POPTR_0001s35660 (9)	scaffold_1:34011055-34012050(+) (9)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os12g19030.1	"copine, putative, expressed"	Medtr6g022780.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.195.S1_a_at	A	A3TS	POPTR_0006s22630	POPTR_0018s07520 (10)//POPTR_0006s22640 (10)//POPTR_0006s22630 (10)	scaffold_18:7849453-7849486(-) (10)//scaffold_6:21580018-21580051(-) (10)//scaffold_6:21585745-21585778(-) (10)	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
PtpAffx.249.197.A1_a_at	A	A1TS	POPTR_0010s24480	POPTR_0010s24480 (11)	scaffold_10:20677187-20677921(-) (11)	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT5G04740.1	ACT domain-containing protein 	LOC_Os12g05650.1	"ACT domain containing protein, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.198.S1_s_at	A	A1TS	POPTR_0011s17110	POPTR_0011s17110 (11)	scaffold_11:18725075-18725318(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.199.A1_at	A	A1TS	POPTR_0001s05270	POPTR_0001s05270 (11)	scaffold_1:4036213-4036670(+) (11)	NA	NA	NA	AT3G57930.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g48600.1	expressed protein	Medtr2g118100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.201.S1_at	A	A1TS	POPTR_0018s10940	POPTR_0018s10940 (11)	scaffold_18:11775052-11775595(+) (11)	NA	Q9M0B6	UDP-glucuronate 4-epimerase 1	AT4G30440.1	UDP-D-glucuronate 4-epimerase 1 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr4g025510.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.249.204.S1_s_at	A	A1TS	POPTR_0010s12110	POPTR_0010s12110 (9)	scaffold_10:12191700-12191977(-) (9)	NA	Q9SSK9	MLP-like protein 28	AT1G70830.5	MLP-like protein 28 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g012990.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.249.205.A1_at	A	A1TS	POPTR_0006s14740	POPTR_0006s14740 (11)	scaffold_6:12102666-12103184(+) (11)	NA	Q93ZH2	Nuclear transcription factor Y subunit A-3	AT1G72830.1	"nuclear factor Y, subunit A3 "	LOC_Os03g07880.1	"nuclear transcription factor Y subunit, putative, expressed"	Medtr2g120660.2	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.249.206.A1_at	A	A1MS	POPTR_0003s03440	POPTR_0003s03440 (11)	scaffold_3:3882679-3882771(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.208.S1_at	A	A1MS	POPTR_0016s14990	POPTR_0016s14990 (11)	scaffold_16:14048385-14048833(+) (11)	NA	NA	NA	AT5G01015.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65295.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g02800.2	"CRP11 - Cysteine-rich family protein precursor, expressed"	Medtr7g081040.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.211.A1_at	A	A1TS	POPTR_0018s01840	POPTR_0018s01840 (9)	scaffold_18:1673990-1674427(+) (9)	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT4G32250.3	Protein kinase superfamily protein 	LOC_Os06g43270.1	"protein kinase domain containing protein, expressed"	Medtr1g013990.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.216.S1_at	A	A1TS	POPTR_0001s26040	POPTR_0001s26040 (11)	scaffold_1:25156949-25157388(+) (11)	NA	P49972	Signal recognition particle 54 kDa protein 2	AT1G48900.1	"Signal recognition particle, SRP54 subunit protein "	LOC_Os01g56600.1	"signal recognition particle 54 kDa protein, putative, expressed"	Medtr2g126740.1	"GTP-binding signal recognition particle SRP54, G-domain "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0005515|protein binding||GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
PtpAffx.249.218.S1_a_at	A	A2TS	POPTR_0008s11750	POPTR_0010s13740 (11)//POPTR_0008s11750 (11)	scaffold_10:13495265-13495450(-) (11)//scaffold_8:7524347-7524532(+) (11)	NA	Q9SX22	"30S ribosomal protein 3-1, chloroplastic"	AT1G68590.1	Ribosomal protein PSRP-3/Ycf65 	LOC_Os04g38750.1	"plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed"	Medtr6g094250.1	Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0009536|plastid||GO:0005840|ribosome
PtpAffx.249.218.S1_at	A	A1TS	POPTR_0010s13740	POPTR_0010s13740 (11)	scaffold_10:13495147-13495640(-) (11)	NA	P82412	"30S ribosomal protein 3, chloroplastic"	AT1G68590.1	Ribosomal protein PSRP-3/Ycf65 	LOC_Os04g38750.1	"plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed"	Medtr6g094250.1	Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0009536|plastid||GO:0005840|ribosome
PtpAffx.249.220.S1_at	A	A1TS	POPTR_0007s04980	POPTR_0007s04980 (11)	scaffold_7:3163799-3165507(-) (11)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os08g37605.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr2g009300.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
PtpAffx.249.221.S1_at	A	A1TS	POPTR_0002s02510	POPTR_0002s02510 (11)	scaffold_2:1417289-1417681(-) (11)	NA	Q8LE10	HVA22-like protein i	AT5G42560.1	"Abscisic acid-responsive (TB2/DP1, HVA22) family protein "	LOC_Os02g02920.1	"HVA22, putative, expressed"	Medtr3g156300.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.223.S1_a_at	A	A1TS	POPTR_0013s05490	POPTR_0013s05490 (11)	scaffold_13:3923131-3924485(-) (11)	NA	Q8VZT0	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1	AT3G03920.1	"H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein "	LOC_Os11g37080.1	"h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0019843|rRNA binding	GO:0005732|small nucleolar ribonucleoprotein complex
PtpAffx.249.224.S1_at	A	A1TS	POPTR_0001s10290	POPTR_0001s10290 (11)	scaffold_1:7980062-7980212(+) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.249.225.S1_a_at	A	A1TS	POPTR_0010s21280	POPTR_0010s21280 (11)	scaffold_10:18630185-18630464(+) (11)	NA	P09189	Heat shock cognate 70 kDa protein	AT5G02500.1	heat shock cognate protein 70-1 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.227.A1_a_at	A	A1TS	POPTR_0014s03530	POPTR_0014s03530 (11)	scaffold_14:2827412-2827777(-) (11)	NA	Q9S7T8	Serpin-ZX	AT1G47710.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41438.1	"serpin domain containing protein, putative, expressed"	Medtr3g148650.1	"Proteinase inhibitor I4, serpin "	NA	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.249.23.A1_a_at	A	A1TS	POPTR_0010s01170	POPTR_0010s01170 (11)	scaffold_10:875256-875358(-) (11)//scaffold_10:1298152-1298254(-) (11)//scaffold_2074:3137-3239(-) (11)	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.249.23.A1_x_at	A	A1TS	POPTR_0010s01170	POPTR_0010s01170 (11)	scaffold_10:875260-875777(-) (11)//scaffold_2074:3141-3658(-) (11)	POPTR_2074s00200 (7)	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.249.231.S1_at	A	A1TS	POPTR_0018s04100	POPTR_0018s04100 (11)	scaffold_18:3499287-3499640(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G31170.3	Protein kinase superfamily protein 	LOC_Os04g51950.1	"serine/threonine-protein kinase HT1, putative, expressed"	Medtr3g040790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.232.S1_a_at	A	A1TS	POPTR_0008s06540	POPTR_0008s06540 (11)	scaffold_8:3894154-3895342(-) (11)	NA	O24412	Probable 26S proteasome non-ATPase regulatory subunit 7	AT5G05780.1	RP non-ATPase subunit 8A 	LOC_Os04g56646.1	"MEE34, putative, expressed"	Medtr3g093230.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.235.A1_at	A	A1TS	POPTR_1269s00200	POPTR_1269s00200 (11)	scaffold_1269:4648-4821(+) (11)//scaffold_15:3603792-3603964(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.237.S1_at	A	A2TS	POPTR_0006s10620	POPTR_0006s10620 (11)//POPTR_0006s10630 (9)	scaffold_6:7958936-7959322(+) (11)//scaffold_6:7964964-7965350(+) (11)	NA	NA	NA	AT3G03280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g47960.1	expressed protein	Medtr7g132830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.238.A1_at	A	A1TS	POPTR_0005s11480	POPTR_0005s11480 (11)	scaffold_5:8282318-8282889(-) (11)	NA	P83332	Thaumatin-like protein 1	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.238.A1_s_at	A	A1TS	POPTR_0005s11480	POPTR_0005s11480 (11)	scaffold_5:8282419-8282983(-) (11)	NA	P83332	Thaumatin-like protein 1	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.239.S1_s_at	A	A1TS	POPTR_0004s17610	POPTR_0004s17610 (11)	scaffold_4:17743453-17743498(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.249.240.S1_at	A	A1TS	POPTR_0009s01840	POPTR_0009s01840 (11)	scaffold_9:2328968-2329569(+) (11)	NA	Q54WW7	Probable serine/threonine-protein kinase DDB_G0279405	AT5G60550.1	geminivirus rep interacting kinase 2 	LOC_Os03g50330.1	"CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g110530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.240.S1_s_at	A	A1TS	POPTR_0009s01840	POPTR_0009s01840 (11)	scaffold_9:2329141-2329623(+) (11)	NA	Q54WW7	Probable serine/threonine-protein kinase DDB_G0279405	AT5G60550.1	geminivirus rep interacting kinase 2 	LOC_Os03g50330.1	"CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g110530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.243.S1_a_at	A	A1TS	POPTR_0002s24370	POPTR_0002s24370 (11)	scaffold_2:21757079-21758174(-) (11)	NA	NA	NA	AT3G24820.1	BSD domain-containing protein 	LOC_Os04g56654.1	"BSD domain-containing protein, putative, expressed"	Medtr5g050050.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.244.A1_s_at	A	A1TS	POPTR_0001s17820	POPTR_0001s17820 (11)	scaffold_1:14733293-14733364(-) (11)//scaffold_16:2210178-2210249(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.247.A1_a_at	A	A1TS	POPTR_0010s17020	POPTR_0010s17020 (11)	scaffold_10:15776301-15776427(+) (11)	NA	Q9AXJ4	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
PtpAffx.249.25.A1_s_at	A	A1TS	POPTR_0002s19710	POPTR_0002s19710 (11)	scaffold_2:15653734-15653879(+) (11)	NA	A6Q0K5	Calvin cycle protein CP12	AT3G62410.1	CP12 domain-containing protein 2 	LOC_Os01g19740.1	"calvin cycle protein CP12, putative, expressed"	Medtr1g106710.1	Protein of unknown function CP12 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.250.S1_at	A	A1TS	POPTR_0009s14030	POPTR_0009s14030 (11)	scaffold_9:11081668-11082159(+) (11)	NA	Q8BFY9	Transportin-1	AT2G16950.2	transportin 1 	LOC_Os04g59494.4	"transportin-2, putative, expressed"	Medtr2g006800.1	Armadillo-like helical 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.249.251.S1_a_at	A	A2TA	POPTR_0019s01240	POPTR_0019s01240 (11)//POPTR_0015s06200 (10)	scaffold_15:6508754-6508799(-) (10)//scaffold_19:997568-997613(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.252.A1_at	A	A1TS	POPTR_0013s05490	POPTR_0013s05490 (9)	scaffold_13:3922875-3923398(-) (9)	NA	Q8VZT0	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1	AT3G03920.1	"H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein "	LOC_Os11g37080.1	"h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0019843|rRNA binding	GO:0005732|small nucleolar ribonucleoprotein complex
PtpAffx.249.256.S1_at	A	A1TS	POPTR_0006s29440	POPTR_0006s29440 (11)	scaffold_6:26801098-26801587(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G31170.3	Protein kinase superfamily protein 	LOC_Os04g51950.1	"serine/threonine-protein kinase HT1, putative, expressed"	Medtr3g040790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.26.A1_s_at	A	A1TS	POPTR_0005s21740	POPTR_0005s21740 (11)	scaffold_5:20847464-20847743(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.249.260.A1_a_at	A	A1TS	POPTR_0014s12520	POPTR_0014s12520 (11)	scaffold_14:9222245-9222319(-) (11)	NA	Q43582	Probable U6 snRNA-associated Sm-like protein LSm4	AT5G27720.1	Small nuclear ribonucleoprotein family protein 	LOC_Os01g15310.1	"LSM domain containing protein, expressed"	Medtr7g130480.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.262.A1_a_at	A	A1TS	POPTR_0009s16680	POPTR_0009s16680 (9)	scaffold_9:12625198-12625447(-) (10)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.249.265.S1_at	A	A1MS	POPTR_0012s11290	POPTR_0012s11290 (11)	scaffold_12:11794045-11794159(+) (11)	NA	P29402	Calnexin homolog 1	AT5G61790.1	calnexin 1 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr3g151490.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
PtpAffx.249.269.A1_a_at	A	A1MS	POPTR_0009s03610	POPTR_0009s03610 (11)	scaffold_9:4235608-4235654(+) (11)	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
PtpAffx.249.27.A1_at	A	A1TS	POPTR_0019s14100	POPTR_0019s14100 (11)	scaffold_19:14856865-14858204(-) (11)	NA	P26291	"Cytochrome b6-f complex iron-sulfur subunit, chloroplastic"	AT4G03280.1	photosynthetic electron transfer C 	LOC_Os07g37030.1	"cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed"	Medtr2g103010.1	Rieske [2Fe-2S] region; 	GO:0055114|oxidation reduction	"GO:0009496|plastoquinol-plastocyanin reductase activity||GO:0009055|electron carrier activity||GO:0051537|""2 iron, 2 sulfur cluster binding"""	GO:0042651|thylakoid membrane
PtpAffx.249.270.S1_s_at	A	A4TS	POPTR_0019s00650	POPTR_1776s00200 (11)//POPTR_0019s00660 (11)//POPTR_0019s00670 (11)//POPTR_0019s00650 (11)	scaffold_1776:1906-1940(+) (11)//scaffold_19:412859-412893(+) (11)//scaffold_19:417735-417769(+) (11)//scaffold_19:423019-423053(-) (11)	NA	Q08298	Dehydration-responsive protein RD22	AT5G25610.1	BURP domain-containing protein 	LOC_Os11g06980.1	"BURP domain containing protein, expressed"	Medtr1g009700.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.273.S1_a_at	A	A1TS	POPTR_0008s03170	POPTR_0008s03170 (11)	scaffold_8:1658895-1659033(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT3G10500.1	NAC domain containing protein 53 	LOC_Os08g44820.1	"no apical meristem protein, putative, expressed"	Medtr8g073410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.249.273.S1_at	A	A1TS	POPTR_0008s03170	POPTR_0008s03170 (9)	scaffold_8:1659135-1659446(-) (9)	NA	Q84K00	NAC domain-containing protein 78	AT3G10500.1	NAC domain containing protein 53 	LOC_Os08g44820.1	"no apical meristem protein, putative, expressed"	Medtr8g073410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.249.274.S1_at	A	A1TS	POPTR_0011s14550	POPTR_0011s14550 (11)	scaffold_11:16912002-16912147(+) (11)	NA	Q40519	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
PtpAffx.249.276.S1_a_at	A	A1TS	POPTR_0018s13890	POPTR_0018s13890 (11)	scaffold_18:14186395-14186767(+) (11)	NA	Q9LU68	Protein CHLOROPLAST IMPORT APPARATUS 2	AT5G57180.2	chloroplast import apparatus 2 	LOC_Os02g05470.1	"CCT motif family protein, expressed"	Medtr8g129690.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.278.A1_s_at	A	A1TS	POPTR_0014s15960	POPTR_0014s15960 (11)	scaffold_14:12030642-12030900(+) (11)	NA	Q07511	"Formate dehydrogenase, mitochondrial"	AT5G14780.1	formate dehydrogenase 	LOC_Os06g29180.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.249.28.A1_s_at	A	A1TS	POPTR_0011s13770	POPTR_0011s13770 (10)	scaffold_11:16430814-16430848(+) (10)	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os07g30640.1	"ubiquitin fusion protein, putative, expressed"	Medtr6g067240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.280.S1_a_at	A	A1TS	POPTR_0003s20830	POPTR_0003s20830 (11)	scaffold_3:19227730-19227993(-) (11)	NA	Q6P3A8	"2-oxoisovalerate dehydrogenase subunit beta, mitochondrial"	AT1G55510.1	branched-chain alpha-keto acid decarboxylase E1 beta subunit 	LOC_Os07g07470.1	"transketolase, putative, expressed"	Medtr4g019090.1	"Transketolase, C-terminal-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.249.281.A1_at	A	A1TS	POPTR_0001s15290	POPTR_0001s15290 (11)	scaffold_1:12117232-12117267(-) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.283.S1_at	A	A2TS	POPTR_0001s37380	POPTR_0001s37380 (10)//POPTR_0776s00200 (10)	scaffold_1:35006148-35006588(-) (10)//scaffold_1:35088114-35088554(-) (9)//scaffold_1:36363539-36373127(-) (10)//scaffold_1:36405687-36406187(-) (10)//scaffold_1030:8612-8887(-) (9)//scaffold_776:9387-9884(-) (10)	POPTR_0001s37400 (8)//POPTR_0001s37370 (7)//POPTR_0001s36440 (7)//POPTR_1030s00220 (7)//POPTR_0001s36430 (6)	O48923	Cytochrome P450 71D10	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr5g102030.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.249.287.A1_a_at	A	A1TS	POPTR_0017s04050	POPTR_0017s04050 (11)	scaffold_17:3045171-3045693(+) (11)	NA	P92812	"60S ribosomal protein L2, mitochondrial"	AT2G44065.2	Ribosomal protein L2 family 	LOC_Os08g15262.1	"chloroplast 50S ribosomal protein L2, putative"	Medtr2g018780.1	Ribosomal protein L2 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.249.288.A1_at	A	A1TS	POPTR_0008s02160	POPTR_0008s02160 (11)	scaffold_8:1038185-1038900(+) (11)	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT5G04740.1	ACT domain-containing protein 	LOC_Os12g05650.1	"ACT domain containing protein, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.29.A1_s_at	A	A1TA	POPTR_0008s11320	POPTR_0008s11320 (10)	scaffold_8:7161922-7162508(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.290.S1_at	A	A1TS	POPTR_0013s11720	POPTR_0013s11720 (9)	scaffold_13:12380868-12382017(+) (9)	NA	P51412	"50S ribosomal protein L21, chloroplastic"	AT1G35680.1	Ribosomal protein L21 	LOC_Os02g15900.1	"50S ribosomal protein L21, chloroplast precursor, putative, expressed"	AC235094_7.1	Ribosomal protein L21 AC235094.1 33114-37272 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.249.291.S1_s_at	A	A1TS	POPTR_0008s05830	POPTR_0008s05830 (11)	scaffold_8:3406462-3406506(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT2G39720.1	RING-H2 finger C2A 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.293.A1_at	A	A1TS	POPTR_0012s13490	POPTR_0012s13490 (11)	scaffold_12:13615729-13616111(-) (11)	NA	NA	NA	AT5G52230.2	methyl-CPG-binding domain protein 13 	LOC_Os04g11730.1	methyl-CpG binding domain containing protein	Medtr6g059140.1	Methyl-CpG binding 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.249.299.A1_at	A	A1TS	POPTR_0019s11470	POPTR_0019s11470 (11)	scaffold_19:12730579-12732163(-) (11)	NA	O66119	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AT1G34430.1	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os12g08170.1	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	AC233660_8.1	Biotin/lipoyl attachment; Dihydrolipoamide succinyltransferase AC233660.2 38835-37267 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.249.31.A1_x_at	A	A1TS	POPTR_0009s03610	POPTR_0009s03610 (9)	scaffold_9:4235419-4236169(+) (11)	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
PtpAffx.249.310.S1_at	A	A1TS	POPTR_0003s14180	POPTR_0003s14180 (11)	scaffold_3:14308188-14308845(-) (11)	NA	P37707	B2 protein	AT5G42050.1	DCD (Development and Cell Death) domain protein 	LOC_Os01g36950.2	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.317.S1_at	A	A1TS	POPTR_0001s10880	POPTR_0001s10880 (11)	scaffold_1:8434127-8434465(-) (11)	NA	P37707	B2 protein	AT5G42050.1	DCD (Development and Cell Death) domain protein 	LOC_Os01g36950.2	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.318.A1_a_at	A	A1TS	POPTR_0001s15530	POPTR_0001s15530 (11)	scaffold_1:12374263-12374468(+) (11)	NA	O65202	Peroxisomal acyl-coenzyme A oxidase 1	AT4G16760.1	acyl-CoA oxidase 1 	LOC_Os06g01390.1	"acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed"	Medtr8g105410.1	Acyl-CoA dehydrogenase C-terminal-like; 	GO:0006635|fatty acid beta-oxidation||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity||GO:0003997|acyl-CoA oxidase activity	GO:0005777|peroxisome
PtpAffx.249.318.A1_s_at	A	A1TS	POPTR_0001s15530	POPTR_0001s15530 (11)	scaffold_1:12374191-12374420(+) (11)	NA	O65202	Peroxisomal acyl-coenzyme A oxidase 1	AT4G16760.1	acyl-CoA oxidase 1 	LOC_Os06g01390.1	"acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed"	Medtr8g105410.1	Acyl-CoA dehydrogenase C-terminal-like; 	GO:0006635|fatty acid beta-oxidation||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity||GO:0003997|acyl-CoA oxidase activity	GO:0005777|peroxisome
PtpAffx.249.32.S2_s_at	A	A1TS	POPTR_0001s47420	POPTR_0001s47420 (11)	scaffold_1:47629922-47630566(+) (11)	NA	O75629	Protein CREG1	AT2G04690.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os06g13100.1	"CREG1 precursor, putative, expressed"	Medtr7g029710.1	FMN-binding split barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.320.S1_at	A	A1TS	POPTR_0005s27240	POPTR_0005s27240 (11)	scaffold_5:24972306-24972454(-) (11)	NA	P30924	"1,4-alpha-glucan-branching enzyme"	AT5G03650.1	starch branching enzyme 2.2 	LOC_Os06g51084.1	"1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed"	Medtr7g126840.1	"Alpha amylase, C-terminal all-beta; "	GO:0005975|carbohydrate metabolic process	"GO:0043169|cation binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.249.321.S1_at	A	A1TS	POPTR_0007s04200	POPTR_0007s04200 (10)	scaffold_7:2536079-2537632(+) (10)	NA	P36862	GTP-binding protein yptV3	AT1G43890.3	RAB GTPASE HOMOLOG B18 	LOC_Os10g31830.1	"ras-related protein, putative, expressed"	Medtr3g143270.1	"Ras GTPase; Sigma-54 factor, interaction region; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.249.322.S1_a_at	A	A1TS	POPTR_0008s20460	POPTR_0008s20460 (11)	scaffold_8:14203654-14203879(-) (11)	NA	P08281	"Glutamine synthetase leaf isozyme, chloroplastic"	AT5G35630.3	glutamine synthetase 2 	LOC_Os04g56400.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr2g026390.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
PtpAffx.249.323.S1_at	A	A1TS	POPTR_0009s12590	POPTR_0009s12590 (11)	scaffold_9:10250449-10251941(+) (11)	NA	P53800	Squalene synthase	AT4G34640.1	squalene synthase 1 	LOC_Os03g59040.2	"squalene synthetase, putative, expressed"	Medtr4g097000.1	Terpenoid synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.249.328.S1_at	A	A1TS	POPTR_0004s08590	POPTR_0004s08590 (11)	scaffold_4:7142247-7142532(-) (11)	NA	Q00423	HMG-Y-related protein A	AT1G14900.1	high mobility group A 	LOC_Os08g33190.1	"linker histone H1 and H5 family protein, expressed"	Medtr5g086060.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.249.330.S1_at	A	A1TS	POPTR_0019s04090	POPTR_0019s04090 (11)	scaffold_19:4164408-4164718(-) (11)	NA	Q92616	Translational activator GCN1	AT1G64790.1	ILITYHIA 	LOC_Os03g51140.1	"HEAT repeat family protein, putative, expressed"	Medtr7g143040.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.331.S1_a_at	A	A1TS	POPTR_0001s06360	POPTR_0001s06360 (11)	scaffold_1:4878861-4878914(-) (11)	NA	Q42586	Uridine 5'-monophosphate synthase	AT3G54470.1	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) 	LOC_Os01g72240.1	"uridine 5-monophosphate synthase, putative, expressed"	Medtr8g039740.1	Phosphoribosyltransferase; Orotidine 5-phosphate decarboxylase; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006207|'de novo' pyrimidine base biosynthetic process||GO:0009116|nucleoside metabolic process	GO:0004590|orotidine-5'-phosphate decarboxylase activity	NA
PtpAffx.249.331.S1_at	A	A1TS	POPTR_0001s06360	POPTR_0001s06360 (10)	scaffold_1:4879446-4879572(-) (10)	NA	Q42586	Uridine 5'-monophosphate synthase	AT3G54470.1	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) 	LOC_Os01g72240.1	"uridine 5-monophosphate synthase, putative, expressed"	Medtr8g039740.1	Phosphoribosyltransferase; Orotidine 5-phosphate decarboxylase; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006207|'de novo' pyrimidine base biosynthetic process||GO:0009116|nucleoside metabolic process	GO:0004590|orotidine-5'-phosphate decarboxylase activity	NA
PtpAffx.249.332.S1_at	A	A1TS	POPTR_0019s13400	POPTR_0019s13400 (11)	scaffold_19:14306935-14307470(+) (11)	NA	Q9LEL6	(RS)-norcoclaurine 6-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os12g25450.1	"O-methyltransferase, putative, expressed"	Medtr4g047310.1	"Blue (type 1) copper domain; O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.249.34.S1_a_at	A	A1TS	POPTR_0006s01020	POPTR_0006s01020 (11)	scaffold_6:582827-582863(+) (11)	NA	Q00451	36.4 kDa proline-rich protein	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g07220.1	"LTPL128 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.341.S1_at	A	A1TS	POPTR_0018s04090	POPTR_0018s04090 (11)	scaffold_18:3494319-3494802(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G31170.3	Protein kinase superfamily protein 	LOC_Os08g12750.1	"serine/threonine-protein kinase HT1, putative, expressed"	Medtr3g040790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.343.A1_at	A	A1TS	POPTR_0003s16060	POPTR_0003s16060 (10)	scaffold_3:15670628-15671059(-) (10)	NA	P51132	"Cytochrome b-c1 complex subunit Rieske-2, mitochondrial"	AT5G13430.1	Ubiquinol-cytochrome C reductase iron-sulfur subunit 	LOC_Os02g32120.1	"cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed"	Medtr7g097200.1	Ubiquinol cytochrome reductase transmembrane region; Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0008121|ubiquinol-cytochrome-c reductase activity||GO:0009055|electron carrier activity||GO:0051537|""2 iron, 2 sulfur cluster binding"""	NA
PtpAffx.249.348.S1_at	A	A1TS	POPTR_0004s12470	POPTR_0004s12470 (11)	scaffold_4:11596088-11596336(+) (11)	NA	Q8LGI2	Probable mitochondrial saccharopine dehydrogenase At5g39410	AT5G39410.1	Saccharopine dehydrogenase  	LOC_Os07g40620.1	"saccharopine dehydrogenase, putative, expressed"	Medtr7g011140.1	Saccharopine dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.35.S1_s_at	A	A4TS	POPTR_0018s09650	POPTR_0124s00210 (11)//POPTR_0018s09650 (11)//POPTR_0124s00200 (11)//POPTR_0018s09590 (10)	scaffold_124:4409-4474(+) (11)//scaffold_124:29650-29715(+) (11)//scaffold_18:10555225-10555290(-) (10)//scaffold_18:10599351-10599416(-) (10)//scaffold_18:10616881-10616946(-) (11)	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.249.352.S1_s_at	A	A1TS	POPTR_0006s07490	POPTR_0006s07490 (10)	scaffold_6:5422394-5423055(+) (10)	POPTR_0018s13890 (8)	Q9LU68	Protein CHLOROPLAST IMPORT APPARATUS 2	AT5G57180.2	chloroplast import apparatus 2 	LOC_Os02g05470.1	"CCT motif family protein, expressed"	Medtr8g129690.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.355.A1_at	A	A1TS	POPTR_0013s11870	POPTR_0013s11870 (11)	scaffold_13:12493872-12493963(-) (11)	NA	O66119	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AT1G34430.1	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os12g08170.1	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	AC233660_8.1	Biotin/lipoyl attachment; Dihydrolipoamide succinyltransferase AC233660.2 38835-37267 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.249.359.S1_at	A	A1TS	POPTR_0004s20960	POPTR_0004s20960 (11)	scaffold_4:20305520-20305575(+) (11)	NA	NA	NA	AT1G08380.1	photosystem I subunit O 	LOC_Os04g33830.1	"membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.36.A1_x_at	A	A1TS	POPTR_0017s06450	POPTR_0017s06450 (10)	scaffold_17:4942189-4942350(-) (10)	NA	P0CG84	Polyubiquitin (Fragment)	AT4G05320.6	polyubiquitin 10 	LOC_Os05g42424.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.2	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.361.A1_at	A	A1TS	POPTR_0014s01980	POPTR_0014s01980 (9)	scaffold_14:1763389-1763798(-) (9)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC232874_16.1	"VEP1 ; binding, putative AC232874.1 54537-55990 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.366.S1_at	A	A1TS	POPTR_0009s01780	POPTR_0009s01780 (10)	scaffold_9:2293870-2294395(+) (10)	NA	Q9SCV4	Beta-galactosidase 8	AT2G28470.1	beta-galactosidase 8 	LOC_Os03g15020.1	"beta-galactosidase precursor, putative, expressed"	Medtr4g081500.1	"Rhodopsin-like GPCR superfamily; D-galactoside/L-rhamnose binding SUEL lectin; Glycoside hydrolase, family 35 "	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.249.369.A1_at	A	A2MA	POPTR_0039s00270	POPTR_0039s00270 (10)//POPTR_0039s00280 (10)	scaffold_39:38873-39169(+) (10)//scaffold_39:45762-46059(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.37.S1_x_at	A	A1TS	POPTR_0013s10350	POPTR_0013s10350 (11)	scaffold_13:10470975-10471803(+) (11)	POPTR_0013s10370 (7)//POPTR_0013s10380 (7)	Q09117	Bark storage protein B	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.249.372.S1_at	A	A1TS	POPTR_0001s25620	POPTR_0001s25620 (11)	scaffold_1:24692191-24694569(+) (11)	POPTR_0009s04770 (7)	Q9FIM2	"ATP-dependent zinc metalloprotease FTSH 9, chloroplastic"	AT5G58870.1	FTSH protease 9 	LOC_Os02g43350.1	"OsFtsH7  FtsH protease, homologue of AtFtsH7, expressed"	Medtr5g078300.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.249.373.A1_s_at	A	A1TS	POPTR_0004s10240	POPTR_0004s10240 (11)	scaffold_4:8791998-8792183(-) (11)	NA	Q9LS01	"Allene oxide cyclase 3, chloroplastic"	AT3G25780.1	allene oxide cyclase 3 	LOC_Os03g32314.1	"allene oxide cyclase 4, chloroplast precursor, putative, expressed"	Medtr5g069000.1	Allene oxide cyclase 	NA	GO:0016853|isomerase activity	GO:0009507|chloroplast
PtpAffx.249.375.S1_at	A	A1TS	POPTR_0001s18240	POPTR_0001s18240 (11)	scaffold_1:15305489-15305943(-) (11)	NA	Q9ZNR6	Probable pyridoxal biosynthesis protein PDX1.2	AT3G16050.1	pyridoxine biosynthesis 1.2 	LOC_Os07g01020.1	"SOR/SNZ family protein, putative, expressed"	Medtr2g021510.1	Vitamin B6 biosynthesis protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.38.A1_a_at	A	A1TS	POPTR_0005s10440	POPTR_0005s10440 (11)	scaffold_5:7497250-7498068(+) (11)	NA	P40619	HMG1/2-like protein	AT1G20696.3	high mobility group B3 	LOC_Os09g37910.1	"HMG1/2, putative, expressed"	Medtr5g024160.1	HMG1/2 (high mobility group) box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.249.381.S1_at	A	A1TA	POPTR_0006s02070	POPTR_0006s02070 (11)	scaffold_6:1328251-1328679(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.384.S1_at	A	A1TS	POPTR_0001s36370	POPTR_0001s36370 (11)	scaffold_1:34918562-34920074(+) (11)	NA	Q54GN2	Thymidylate kinase	AT5G59440.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g44630.2	"thymidylate kinase, putative, expressed"	Medtr2g100150.1	Thymidylate kinase 	NA	GO:0005524|ATP binding	NA
PtpAffx.249.39.A1_x_at	A	A1TS	POPTR_0013s10380	POPTR_0013s10380 (10)	scaffold_13:10553074-10553865(-) (10)	POPTR_0013s10350 (6)	Q07469	Bark storage protein A	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.249.391.A1_a_at	A	A1TS	POPTR_0009s10240	POPTR_0009s10240 (11)	scaffold_9:8850004-8850299(+) (11)	NA	Q9SLN1	Filament-like plant protein 7	AT3G19370.3	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.394.A1_at	A	A1TS	POPTR_0798s00200	POPTR_0798s00200 (10)	scaffold_15:4898156-4898505(+) (11)//scaffold_798:2162-2511(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.395.S1_a_at	A	A1TS	POPTR_0017s10800	POPTR_0017s10800 (11)	scaffold_17:10332763-10333383(-) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT5G14680.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g47840.1	"universal stress protein domain containing protein, putative, expressed"	Medtr6g005940.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.249.401.A1_at	A	A1TA	POPTR_0003s06930	POPTR_0003s06930 (9)	scaffold_3:8489976-8490217(+) (9)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.249.404.S1_at	A	A1TS	POPTR_0001s27880	POPTR_0001s27880 (11)	scaffold_1:26740848-26741253(-) (11)	NA	Q6NPN5	F-box/kelch-repeat protein At5g26960	AT5G26960.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os12g04130.1	OsFBO23 - F-box and other domain containing protein	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.409.A1_at	A	A1MS	POPTR_0010s16050	POPTR_0010s16050 (9)	scaffold_10:15106623-15106756(+) (9)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.41.S1_a_at	A	A1TS	POPTR_0010s01590	POPTR_0010s01590 (9)	scaffold_10:1811209-1811242(-) (9)	NA	Q39644	Late embryogenesis abundant protein Lea5	AT4G15910.1	drought-induced 21 	NA	NA	Medtr8g138590.1	Late embryogenesis abundant protein 3 	GO:0006950|response to stress	NA	NA
PtpAffx.249.411.A1_a_at	A	A1TS	POPTR_0005s10440	POPTR_0005s10440 (11)	scaffold_5:7498424-7498467(+) (11)	NA	P40619	HMG1/2-like protein	AT1G20696.3	high mobility group B3 	LOC_Os09g37910.1	"HMG1/2, putative, expressed"	Medtr5g024160.1	HMG1/2 (high mobility group) box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.249.412.A1_at	A	A1TA	POPTR_0006s07680	POPTR_0006s07680 (9)	scaffold_6:5619174-5619284(-) (9)	POPTR_0018s14220 (7)//POPTR_0018s14210 (7)	O50003	60S ribosomal protein L12	AT2G37190.1	Ribosomal protein L11 family protein 	LOC_Os04g50990.1	"L11 domain containing ribosomal protein, putative, expressed"	Medtr4g081720.1	Ribosomal protein L11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.249.417.A1_a_at	A	A1TS	POPTR_0011s14410	POPTR_0011s14410 (11)	scaffold_11:16827794-16828304(-) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.418.A1_a_at	A	A1MA	POPTR_1023s00200	POPTR_1023s00200 (10)	scaffold_1023:6964-6999(-) (10)//scaffold_19:13841508-13841543(-) (10)//scaffold_3:2094946-2094981(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.42.S1_s_at	A	A1TS	POPTR_0009s14850	POPTR_0009s14850 (11)	scaffold_9:11554603-11555200(+) (11)	NA	O24415	60S acidic ribosomal protein P2B	AT3G44590.1	60S acidic ribosomal protein family 	LOC_Os05g37330.1	"60S acidic ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.249.421.A1_a_at	A	A1TS	POPTR_0015s02070	POPTR_0015s02070 (9)	scaffold_15:1414485-1414772(+) (11)	NA	Q65XK7	Probable protein phosphatase 2C 51	AT1G07430.1	highly ABA-induced PP2C gene 2 	LOC_Os05g49730.1	"protein phosphatase 2C, putative, expressed"	Medtr5g009410.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.43.S1_s_at	A	A1TS	POPTR_0004s16260	POPTR_0004s16260 (9)	scaffold_4:16684435-16684467(+) (9)	NA	Q03878	Glycine-rich RNA-binding protein	AT2G21660.2	"cold, circadian rhythm, and rna binding 2 "	LOC_Os12g43600.1	"RNA recognition motif containing protein, expressed"	Medtr4g095740.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.249.437.S1_a_at	A	A2TS	POPTR_0019s14550	POPTR_0664s00210 (11)//POPTR_0019s14550 (11)	scaffold_19:15310926-15311384(+) (11)//scaffold_664:5956-6414(+) (11)	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.249.44.S1_x_at	A	A1TS	POPTR_0006s22630	POPTR_0006s22630 (10)	scaffold_6:21579710-21580051(-) (10)	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
PtpAffx.249.444.S1_at	A	A1TS	POPTR_0010s09080	POPTR_0010s09080 (11)	scaffold_10:9928729-9929263(-) (11)	NA	NA	NA	AT3G22970.1	Protein of unknown function (DUF506)  	LOC_Os03g58230.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr1g083310.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.45.S1_x_at	A	A1TS	POPTR_0019s00770	POPTR_0019s00770 (11)	scaffold_19:510803-511255(-) (11)	NA	Q40901	Defensin-like protein	AT2G02130.1	low-molecular-weight cysteine-rich 68 	LOC_Os03g03810.1	"DEF8 - Defensin and Defensin-like DEFL family, expressed"	Medtr8g090060.1	Knottin 	GO:0006952|defense response	NA	NA
PtpAffx.249.450.S1_a_at	A	A1TS	POPTR_0005s19590	POPTR_0005s19590 (11)	scaffold_5:18472702-18472772(-) (11)	NA	Q9LRH6	GATA transcription factor 25	AT4G24470.2	GATA-type zinc finger protein with TIFY domain 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149710.1	"Zinc finger, GATA-type; ZIM; CCT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.450.S1_at	A	A1TS	POPTR_0005s19590	POPTR_0005s19590 (11)	scaffold_5:18472846-18473065(-) (11)	NA	Q9LRH6	GATA transcription factor 25	AT4G24470.2	GATA-type zinc finger protein with TIFY domain 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149710.1	"Zinc finger, GATA-type; ZIM; CCT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.451.S1_at	A	A1TS	POPTR_0006s27180	POPTR_0006s27180 (11)	scaffold_6:25164651-25164835(+) (11)	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT4G32250.3	Protein kinase superfamily protein 	LOC_Os06g43270.1	"protein kinase domain containing protein, expressed"	Medtr1g013990.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.461.S1_s_at	A	A1TS	POPTR_0001s32800	POPTR_0001s32800 (11)	scaffold_1:31115138-31115466(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.463.A1_a_at	A	A2TS	POPTR_0019s01950	POPTR_0019s01950 (11)//POPTR_0019s02700 (11)	scaffold_19:1726496-1726656(+) (11)//scaffold_19:2503197-2503355(+) (11)	POPTR_0019s02740 (8)	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.249.465.S1_s_at	A	A1TS	POPTR_0008s12580	POPTR_0008s12580 (11)	scaffold_8:8149981-8150472(+) (11)	NA	Q8T7K0	ALG-2 interacting protein X	AT1G15130.1	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os10g35250.1	"vacuolar protein-sorting protein bro1, putative, expressed"	Medtr1g137820.1	"ALG2-interacting protein X, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.466.A1_at	A	A1TS	POPTR_0012s01550	POPTR_0012s01550 (9)	scaffold_12:1171998-1172536(-) (9)	NA	Q9FGM1	Abscisic acid receptor PYL8	AT5G53160.2	regulatory components of ABA receptor 3 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	Medtr3g124520.1	"CAPIP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.467.S1_a_at	A	A1TS	POPTR_0015s08620	POPTR_0015s08620 (11)	scaffold_15:9939114-9939911(+) (11)	NA	Q93YW0	"Protein EXECUTER 1, chloroplastic"	AT1G27510.1	Protein of unknown function (DUF3506) 	LOC_Os01g01790.1	expressed protein	Medtr3g113590.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.468.A1_at	A	A1TS	POPTR_0010s21270	POPTR_0010s21270 (10)	scaffold_10:18618590-18618861(+) (10)	NA	P27322	Heat shock cognate 70 kDa protein 2	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.469.S1_a_at	A	A2TS	POPTR_0004s08590	POPTR_0004s08590 (9)//POPTR_0017s02940 (9)	scaffold_17:2116882-2116914(-) (9)//scaffold_4:7142708-7142740(-) (9)	NA	Q00423	HMG-Y-related protein A	AT1G14900.1	high mobility group A 	LOC_Os08g33190.1	"linker histone H1 and H5 family protein, expressed"	Medtr5g086060.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.249.469.S1_at	A	A1TS	POPTR_0017s02940	POPTR_0017s02940 (9)	scaffold_17:2116743-2117066(-) (9)	NA	Q00423	HMG-Y-related protein A	AT1G14900.1	high mobility group A 	LOC_Os08g33190.1	"linker histone H1 and H5 family protein, expressed"	Medtr3g087730.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.249.47.A1_s_at	A	A1TS	POPTR_0001s09570	POPTR_0001s09570 (11)	scaffold_1:7280980-7281206(+) (11)	NA	P50700	Osmotin-like protein OSM34	AT4G11650.1	osmotin 34 	LOC_Os03g46070.1	"thaumatin, putative, expressed"	Medtr5g010810.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.470.S1_a_at	A	A1TS	POPTR_0019s10470	POPTR_0019s10470 (10)	scaffold_1028:616-4579(+) (10)//scaffold_19:12036109-12037639(+) (10)	POPTR_1028s00200 (8)	P00062	Cytochrome c	AT1G22840.1	CYTOCHROME C-1 	LOC_Os05g34770.1	"cytochrome c, putative, expressed"	Medtr5g008520.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.249.472.S1_s_at	A	A1TS	POPTR_0015s07110	POPTR_0015s07110 (11)	scaffold_15:8231165-8231509(-) (11)	NA	Q9LFW3	COBRA-like protein 4	AT5G15630.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os03g30250.1	"COBRA-like protein precursor, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.473.S1_at	A	A1TS	POPTR_0008s16270	POPTR_0008s16270 (9)	scaffold_8:10894245-10894902(-) (9)	NA	NA	NA	AT3G23090.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.474.S1_at	A	A1TS	POPTR_0007s05810	POPTR_0007s05810 (11)	scaffold_7:3964985-3965319(-) (11)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
PtpAffx.249.475.S1_a_at	A	A1TS	POPTR_0010s21350	POPTR_0010s21350 (11)	scaffold_10:18670153-18670637(-) (11)	NA	P09189	Heat shock cognate 70 kDa protein	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.478.A1_s_at	A	A1TS	POPTR_0006s17940	POPTR_0006s17940 (11)	scaffold_6:16227961-16228151(-) (11)	NA	P17784	Fructose-bisphosphate aldolase cytoplasmic isozyme	AT2G36460.1	Aldolase superfamily protein 	LOC_Os05g33380.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g077730.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.249.479.S1_at	A	A1TS	POPTR_0005s04710	POPTR_0005s04710 (11)	scaffold_5:3159060-3159335(-) (11)	NA	O04658	Probable nucleolar protein 5-1	AT5G27120.1	NOP56-like pre RNA processing ribonucleoprotein 	LOC_Os03g22730.1	"nucleolar protein NOP5-1, putative"	Medtr5g010360.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOP5, N-terminal; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.48.S1_x_at	A	A1TS	POPTR_0010s01590	POPTR_0010s01590 (11)	scaffold_10:1810590-1811258(-) (11)	NA	Q39644	Late embryogenesis abundant protein Lea5	AT4G15910.1	drought-induced 21 	NA	NA	Medtr8g138590.1	Late embryogenesis abundant protein 3 	GO:0006950|response to stress	NA	NA
PtpAffx.249.481.S1_s_at	A	A1TS	POPTR_0009s06690	POPTR_0009s06690 (11)	scaffold_9:6427412-6427698(-) (11)	NA	O22342	"ADP,ATP carrier protein 1, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.482.S1_at	A	A1TS	POPTR_0018s07220	POPTR_0018s07220 (11)	scaffold_18:7410122-7410496(-) (11)	NA	Q93ZH2	Nuclear transcription factor Y subunit A-3	AT1G72830.1	"nuclear factor Y, subunit A3 "	LOC_Os03g07880.1	"nuclear transcription factor Y subunit, putative, expressed"	Medtr2g120660.2	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.249.483.S1_at	A	A1TS	POPTR_0010s00670	POPTR_0010s00670 (11)	scaffold_10:366936-367948(-) (11)	NA	P93045	Chromatin structure-remodeling complex protein BSH	AT3G17590.1	"transcription regulatory protein SNF5, putative (BSH) "	LOC_Os02g49190.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed"	Medtr8g133630.1	SNF5/SMARCB1/INI1 	GO:0006338|chromatin remodeling	NA	GO:0000228|nuclear chromosome
PtpAffx.249.484.S1_at	A	A1TS	POPTR_0016s12030	POPTR_0016s12030 (9)	scaffold_16:11279754-11280478(+) (9)	NA	P49972	Signal recognition particle 54 kDa protein 2	AT1G48900.1	"Signal recognition particle, SRP54 subunit protein "	LOC_Os01g56600.1	"signal recognition particle 54 kDa protein, putative, expressed"	Medtr2g126740.1	"GTP-binding signal recognition particle SRP54, G-domain "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0005515|protein binding||GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
PtpAffx.249.486.S1_s_at	A	A1TS	POPTR_0019s05040	POPTR_0019s05040 (11)	scaffold_19:5267422-5268994(+) (11)	NA	Q8VZT0	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1	AT3G03920.1	"H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein "	LOC_Os11g37080.1	"h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0019843|rRNA binding	GO:0005732|small nucleolar ribonucleoprotein complex
PtpAffx.249.487.S1_at	A	A1TS	POPTR_0009s16240	POPTR_0009s16240 (11)	scaffold_9:12399320-12399881(+) (11)	NA	NA	NA	AT1G08380.1	photosystem I subunit O 	LOC_Os04g33830.1	"membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.490.S1_a_at	A	A2TS	POPTR_0002s07410	POPTR_0002s07410 (11)//POPTR_0005s20910 (11)	scaffold_2:5070525-5070578(-) (11)//scaffold_5:20032547-20032600(+) (11)	NA	Q3SWZ6	Ribosome maturation protein SBDS	AT1G43860.1	sequence-specific DNA binding transcription factors 	LOC_Os08g01620.2	"shwachman-Bodian-Diamond syndrome protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.490.S1_at	A	A1MS	POPTR_0005s20910	POPTR_0005s20910 (11)	scaffold_5:20032437-20032683(+) (11)	NA	Q3SWZ6	Ribosome maturation protein SBDS	AT1G43860.1	sequence-specific DNA binding transcription factors 	LOC_Os08g01620.2	"shwachman-Bodian-Diamond syndrome protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.493.S1_at	A	A1TS	POPTR_0005s18850	POPTR_0005s18850 (11)	scaffold_5:17213895-17214085(-) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT4G37470.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g32270.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g099190.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.495.S1_a_at	A	A1TS	POPTR_0011s17110	POPTR_0011s17110 (11)	scaffold_11:18720362-18723762(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.496.A1_s_at	A	A1TS	POPTR_0002s05660	POPTR_0002s05660 (11)	scaffold_2:3725830-3725886(+) (11)	NA	Q9SLQ8	"Oxygen-evolving enhancer protein 2, chloroplastic"	AT1G06680.1	photosystem II subunit P-1 	LOC_Os07g04840.1	"PsbP, putative, expressed"	Medtr5g097510.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.249.50.S1_x_at	A	A1TS	POPTR_0002s22040	POPTR_0002s22040 (11)	scaffold_2:18727647-18728075(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.503.S1_s_at	A	A1TS	POPTR_0008s12580	POPTR_0008s12580 (11)	scaffold_8:8147036-8149489(+) (11)	NA	Q8T7K0	ALG-2 interacting protein X	AT1G15130.1	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os10g35250.1	"vacuolar protein-sorting protein bro1, putative, expressed"	Medtr1g137820.1	"ALG2-interacting protein X, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.505.S1_at	A	A1TS	POPTR_0002s16410	POPTR_0002s16410 (11)	scaffold_2:12278507-12279671(-) (11)	NA	Q9LMM6	"Protein BPS1, chloroplastic"	AT2G46080.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.51.A1_a_at	A	A1TS	POPTR_0013s01640	POPTR_0013s01640 (11)	scaffold_13:928760-928810(-) (11)	NA	NA	NA	AT1G56220.3	Dormancy/auxin associated family protein 	LOC_Os03g22270.3	"auxin-repressed protein, putative, expressed"	Medtr1g099940.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.51.A2_at	A	A1TS	POPTR_0013s01640	POPTR_0013s01640 (10)	scaffold_13:927678-928145(-) (10)//scaffold_1329:5285-5786(-) (11)	NA	NA	NA	AT1G56220.3	Dormancy/auxin associated family protein 	LOC_Os03g22270.3	"auxin-repressed protein, putative, expressed"	Medtr1g099940.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.511.S1_x_at	A	A1TS	POPTR_0002s22040	POPTR_0002s22040 (11)	scaffold_2:18727000-18727743(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.517.S1_at	A	A1TS	POPTR_0008s05410	POPTR_0008s05410 (9)	scaffold_8:3133727-3134680(+) (9)	NA	P09189	Heat shock cognate 70 kDa protein	AT5G02500.1	heat shock cognate protein 70-1 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g025840.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.52.S1_x_at	A	A1TS	POPTR_0019s14540	POPTR_0019s14540 (9)	scaffold_19:15306466-15306974(+) (9)//scaffold_664:2427-10806(+) (9)	POPTR_0664s00220 (8)	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.249.521.S1_a_at	A	A1TS	POPTR_0011s14630	POPTR_0011s14630 (11)	scaffold_11:16971027-16972199(-) (11)	NA	Q28E41	RNA-binding protein with serine-rich domain 1	AT1G16610.1	arginine/serine-rich 45 	LOC_Os01g72890.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.249.524.S1_a_at	A	A1TS	POPTR_0019s13400	POPTR_0019s13400 (11)	scaffold_19:14306339-14306509(+) (11)	NA	Q9LEL6	(RS)-norcoclaurine 6-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os12g25450.1	"O-methyltransferase, putative, expressed"	Medtr4g047310.1	"Blue (type 1) copper domain; O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.249.525.S1_at	A	A1TS	POPTR_0007s00710	POPTR_0007s00710 (11)	scaffold_7:360877-360995(+) (11)	NA	P92812	"60S ribosomal protein L2, mitochondrial"	AT2G44065.2	Ribosomal protein L2 family 	LOC_Os08g15262.1	"chloroplast 50S ribosomal protein L2, putative"	Medtr2g018780.1	Ribosomal protein L2 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.249.529.A1_at	A	A1TS	POPTR_0008s07830	POPTR_0008s07830 (9)	scaffold_8:4820543-4820972(-) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.249.531.A1_a_at	A	A1TS	POPTR_0001s25620	POPTR_0001s25620 (11)	scaffold_1:24695256-24695744(+) (11)	NA	Q9FIM2	"ATP-dependent zinc metalloprotease FTSH 9, chloroplastic"	AT5G58870.1	FTSH protease 9 	LOC_Os02g43350.1	"OsFtsH7  FtsH protease, homologue of AtFtsH7, expressed"	Medtr5g078300.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.249.532.A1_at	A	A1TS	POPTR_0003s22010	POPTR_0003s22010 (11)	scaffold_3:19962044-19962085(+) (11)	NA	NA	NA	AT3G57930.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g48600.1	expressed protein	Medtr2g118100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.533.S1_a_at	A	A1TS	POPTR_0011s14630	POPTR_0011s14630 (11)	scaffold_11:16972312-16973386(-) (11)	NA	Q28E41	RNA-binding protein with serine-rich domain 1	AT1G16610.1	arginine/serine-rich 45 	LOC_Os01g72890.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.249.536.S1_at	A	A1TA	POPTR_0004s02380	POPTR_0004s02380 (10)	scaffold_4:1504749-1505180(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.540.A1_at	A	A2TA	POPTR_0002s15130	POPTR_0002s15130 (10)//POPTR_0011s00910 (9)	scaffold_11:465209-465463(-) (11)//scaffold_11:471212-471466(-) (11)//scaffold_193:30215-30469(+) (11)//scaffold_2:11260022-11260276(-) (11)//scaffold_2:11267305-11267558(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.542.A1_at	A	A1TA	POPTR_0013s11945	POPTR_0013s11945 (10)	scaffold_13:12590307-12590473(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.557.A1_at	A	A1TA	POPTR_0018s10940	POPTR_0018s10940 (9)	scaffold_18:11774456-11774624(-) (9)	NA	Q9M0B6	UDP-glucuronate 4-epimerase 1	AT4G30440.1	UDP-D-glucuronate 4-epimerase 1 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr4g025510.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.249.561.A1_at	A	A1MS	POPTR_0002s14400	POPTR_0002s14400 (9)	scaffold_2:10672674-10673075(+) (9)	NA	A0JP85	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.1	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.563.A1_at	A	A1MS	POPTR_0001s09070	POPTR_0001s09070 (11)	scaffold_1:6941987-6942085(-) (11)	NA	NA	NA	AT1G63260.2	tetraspanin10 	LOC_Os10g35980.1	"tetraspanin family protein, putative, expressed"	Medtr8g078110.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.249.568.S1_at	A	A1TS	POPTR_0005s18850	POPTR_0005s18850 (9)	scaffold_5:17212679-17212952(-) (9)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT4G37470.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g32270.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g099190.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.570.S1_a_at	A	A1TS	POPTR_0007s05810	POPTR_0007s05810 (11)	scaffold_7:3965306-3965811(-) (11)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
PtpAffx.249.570.S1_at	A	A1MS	POPTR_0007s05810	POPTR_0007s05810 (10)	scaffold_7:3965283-3965739(-) (10)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
PtpAffx.249.572.S1_s_at	A	A1TS	POPTR_0018s02230	POPTR_0018s02230 (11)	scaffold_18:1990818-1990900(-) (11)	NA	NA	NA	AT4G32020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.573.S1_at	A	A1MS	POPTR_0001s27230	POPTR_0001s27230 (9)	scaffold_1:26128755-26129162(+) (9)	NA	NA	NA	AT5G47940.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os07g38160.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.574.S1_at	A	A1TS	POPTR_0001s47490	POPTR_0001s47490 (11)	scaffold_1:47668335-47668795(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.575.A1_at	A	A1TS	POPTR_0012s04590	POPTR_0012s04590 (11)	scaffold_12:3908073-3909248(+) (11)	NA	Q9LV37	Mitogen-activated protein kinase 9	AT3G18040.1	MAP kinase 9 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.577.A1_at	A	A1TA	POPTR_0005s09460	POPTR_0005s09460 (10)	scaffold_5:6593030-6593067(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.581.A1_a_at	A	A1TS	POPTR_0008s02260	POPTR_0008s02260 (11)	scaffold_8:1082653-1083276(-) (11)	NA	Q9DCB4	cAMP-regulated phosphoprotein 21	AT3G56680.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr1g117280.1	Single-stranded nucleic acid binding R3H 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.249.588.A1_at	A	A1TA	POPTR_0011s02770	POPTR_0011s02770 (10)	scaffold_11:2703687-2703842(-) (10)	NA	P27493	"Chlorophyll a-b binding protein 21, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.249.599.A1_s_at	A	A1TS	POPTR_0019s04090	POPTR_0019s04090 (11)	scaffold_19:4164129-4165939(-) (11)	NA	Q92616	Translational activator GCN1	AT1G64790.1	ILITYHIA 	LOC_Os03g51140.1	"HEAT repeat family protein, putative, expressed"	Medtr7g143040.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.6.A1_x_at	A	A1TS	POPTR_0007s02460	POPTR_0007s02460 (10)	scaffold_7:1457960-1458179(-) (10)	NA	Q8H159	Polyubiquitin 10	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.5	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.600.S1_s_at	A	A1TS	POPTR_0001s47360	POPTR_0001s47360 (11)	scaffold_1:47582485-47582994(-) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT3G13310.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	CU013523_26.1	"Heat shock protein DnaJ, N-terminal CU013523.3 104000-104817 E EGN_Mt090430 200"	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.249.606.A1_a_at	A	A1TS	POPTR_0001s09070	POPTR_0001s09070 (11)	scaffold_1:6941782-6942667(-) (11)	NA	NA	NA	AT1G63260.2	tetraspanin10 	LOC_Os10g35980.1	"tetraspanin family protein, putative, expressed"	Medtr8g078110.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.249.607.A1_at	A	A1TS	POPTR_0006s10330	POPTR_0006s10330 (11)	scaffold_6:7742731-7743072(+) (11)	NA	Q8RWG8	Ran-binding protein 1 homolog b	AT2G30060.1	Pleckstrin homology (PH) domain superfamily protein 	LOC_Os05g28290.1	"ranBP1 domain containing protein, expressed"	Medtr6g036210.1	Pleckstrin homology-type 	GO:0046907|intracellular transport	NA	NA
PtpAffx.249.609.S1_s_at	A	A1TS	POPTR_0006s07680	POPTR_0006s07680 (11)	scaffold_6:5619042-5619570(+) (11)	NA	O50003	60S ribosomal protein L12	AT2G37190.1	Ribosomal protein L11 family protein 	LOC_Os04g50990.1	"L11 domain containing ribosomal protein, putative, expressed"	Medtr4g081720.1	Ribosomal protein L11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.249.615.A1_at	A	A1MS	POPTR_0011s17290	POPTR_0011s17290 (11)	scaffold_11:18883955-18884236(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.62.S1_s_at	A	A2TS	POPTR_0006s18230	POPTR_0006s18230 (11)//POPTR_0006s18240 (11)	scaffold_6:16504550-16504784(+) (11)//scaffold_6:16543307-16543541(+) (11)	NA	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.249.62.S1_x_at	A	A2TS	POPTR_0006s18230	POPTR_0006s18230 (11)//POPTR_0006s18240 (11)	scaffold_6:16504200-16504678(+) (11)//scaffold_6:16542957-16543435(+) (11)	NA	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.249.621.A1_at	A	A1TS	POPTR_0017s13120	POPTR_0017s13120 (11)	scaffold_17:13282813-13283134(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.623.A1_a_at	A	A1TS	POPTR_0006s24830	POPTR_0006s24830 (11)	scaffold_6:23355879-23356185(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g49485.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.626.S1_a_at	A	A1TS	POPTR_0011s17110	POPTR_0011s17110 (11)	scaffold_11:18719714-18719750(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.626.S1_at	A	A1MS	POPTR_0011s17110	POPTR_0011s17110 (11)	scaffold_11:18719772-18720002(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.63.A1_a_at	A	A3TA	POPTR_0078s00230	POPTR_0078s00230 (11)//POPTR_0078s00240 (11)//POPTR_0004s02650 (10)	scaffold_4:1769699-1770079(+) (11)//scaffold_78:38195-38575(+) (11)//scaffold_78:47443-47823(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.63.A1_x_at	A	A3TA	POPTR_0078s00230	POPTR_0078s00230 (11)//POPTR_0078s00240 (11)//POPTR_0004s02650 (9)	scaffold_4:1769700-1769958(+) (9)//scaffold_78:38196-38654(+) (11)//scaffold_78:47444-47902(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.632.A1_a_at	A	A3TA	POPTR_0013s05870	POPTR_0013s05870 (11)//POPTR_0013s05890 (11)//POPTR_0013s05880 (9)	scaffold_13:4242892-4242929(+) (11)//scaffold_13:4243021-4243058(+) (11)//scaffold_13:4248504-4248539(+) (9)//scaffold_13:4273646-4273683(+) (11)//scaffold_13:4273763-4273800(+) (11)//scaffold_13:4273868-4273905(+) (11)//scaffold_13:4273991-4274028(+) (11)//scaffold_13:4274108-4274145(+) (11)//scaffold_13:4274225-4274262(+) (11)//scaffold_13:4280811-4280848(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
PtpAffx.249.632.A1_at	A	A1MA	POPTR_0013s05890	POPTR_0013s05890 (11)	scaffold_13:4273644-4274527(+) (11)//scaffold_13:4273761-4281113(+) (9)	POPTR_0013s05900 (8)//POPTR_0013s05880 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
PtpAffx.249.633.A1_x_at	A	A1TS	POPTR_0009s11920	POPTR_0009s11920 (11)	scaffold_9:9815306-9815845(+) (11)	NA	Q03878	Glycine-rich RNA-binding protein	AT2G21660.2	"cold, circadian rhythm, and rna binding 2 "	LOC_Os12g43600.1	"RNA recognition motif containing protein, expressed"	Medtr4g095740.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.249.636.S1_at	A	A1TS	POPTR_0001s17110	POPTR_0001s17110 (11)	scaffold_1:13977919-13978183(+) (11)	NA	Q55DE7	Ataxin-2 homolog	AT3G14010.3	CTC-interacting domain 4 	LOC_Os02g27950.2	"ataxin-2 related protein, putative, expressed"	Medtr2g120650.1	"Ataxin-2, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.639.S1_a_at	A	A1MS	POPTR_0013s05880	POPTR_0013s05880 (11)	scaffold_13:4242507-4248011(-) (11)	POPTR_0013s05900 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
PtpAffx.249.647.S1_at	A	A1TS	POPTR_0019s07580	POPTR_0019s07580 (10)	scaffold_19:8649200-8649706(+) (10)	NA	NA	NA	AT1G08580.1	unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os02g39180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.648.S1_at	A	A1TS	POPTR_0004s16830	POPTR_0004s16830 (10)	scaffold_4:17184973-17187032(+) (10)	NA	P53800	Squalene synthase	AT4G34640.1	squalene synthase 1 	LOC_Os03g59040.2	"squalene synthetase, putative, expressed"	Medtr4g097000.1	Terpenoid synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.249.649.S1_a_at	A	A1TS	POPTR_0003s19830	POPTR_0003s19830 (11)	scaffold_3:18458211-18458427(+) (11)	NA	Q54EY2	Translation initiation factor eIF-2B subunit beta	AT3G07300.2	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os10g25320.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.249.650.S1_at	A	A1TS	POPTR_0001s12860	POPTR_0001s12860 (11)	scaffold_1:9991909-9992003(+) (11)	NA	NA	NA	AT5G13390.1	no exine formation 1 	LOC_Os11g32470.1	"NEF1, putative, expressed"	Medtr7g006260.1	"NEF1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.66.A1_s_at	A	A1TS	POPTR_0015s06860	POPTR_0015s06860 (11)	scaffold_15:7876335-7876539(-) (11)	POPTR_0012s06750 (6)	P26360	"ATP synthase subunit gamma, mitochondrial"	AT2G33040.1	gamma subunit of Mt ATP synthase 	LOC_Os10g17280.1	"ATP synthase gamma chain, putative, expressed"	Medtr3g068860.1	"H+-transporting two-sector ATPase, gamma subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)"""
PtpAffx.249.665.A1_at	A	A1TS	POPTR_0006s29430	POPTR_0006s29430 (11)	scaffold_6:26795635-26796040(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G31170.3	Protein kinase superfamily protein 	LOC_Os08g12750.1	"serine/threonine-protein kinase HT1, putative, expressed"	Medtr3g040790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.667.S1_a_at	A	A1TS	POPTR_0008s11750	POPTR_0008s11750 (11)	scaffold_8:7523928-7524112(+) (11)	NA	Q9SX22	"30S ribosomal protein 3-1, chloroplastic"	AT1G68590.1	Ribosomal protein PSRP-3/Ycf65 	LOC_Os04g38750.1	"plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed"	Medtr6g094250.1	Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0009536|plastid||GO:0005840|ribosome
PtpAffx.249.682.A1_at	A	A1TS	POPTR_0009s05720	POPTR_0009s05720 (11)	scaffold_9:5745847-5746227(+) (11)	NA	P31336	"Photosystem II 5 kDa protein, chloroplastic"	AT1G51400.1	Photosystem II 5 kD protein 	NA	NA	Medtr3g029860.1	"Photosystem II 5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.684.A1_a_at	A	A2TS	POPTR_0019s14100	POPTR_0019s14100 (11)//POPTR_0013s14520 (10)	scaffold_13:14678380-14679182(-) (10)//scaffold_19:14858216-14859009(-) (11)	NA	P26291	"Cytochrome b6-f complex iron-sulfur subunit, chloroplastic"	AT4G03280.1	photosynthetic electron transfer C 	LOC_Os07g37030.1	"cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed"	Medtr2g103010.1	Rieske [2Fe-2S] region; 	GO:0055114|oxidation reduction	"GO:0009496|plastoquinol-plastocyanin reductase activity||GO:0009055|electron carrier activity||GO:0051537|""2 iron, 2 sulfur cluster binding"""	GO:0042651|thylakoid membrane
PtpAffx.249.69.A1_s_at	A	A1TS	POPTR_0001s31790	POPTR_0001s31790 (11)	scaffold_1:30161633-30161894(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.69.A1_x_at	A	A1TS	POPTR_0001s31790	POPTR_0001s31790 (9)	scaffold_1:30161756-30162116(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.693.S1_s_at	A	A1TS	POPTR_0014s17990	POPTR_0014s17990 (11)	scaffold_14:14581481-14581593(+) (11)	NA	NA	NA	AT4G36660.1	Protein of unknown function (DUF1195) 	LOC_Os07g41660.1	expressed protein	Medtr5g019780.1	Protein of unknown function DUF1195 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.695.A1_a_at	A	A1TS	POPTR_0001s24660	POPTR_0001s24660 (11)	scaffold_1:23918944-23919945(+) (11)	NA	O24058	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
PtpAffx.249.699.S1_s_at	A	A1TS	POPTR_0009s06860	POPTR_0009s06860 (11)	scaffold_9:6547412-6547446(+) (11)	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr6g093440.1	Ribosomal protein L31e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.249.7.S1_x_at	A	A2TS	POPTR_0664s00220	POPTR_0664s00220 (10)//POPTR_0019s14540 (9)	scaffold_19:15306485-15306969(+) (9)//scaffold_664:2446-10801(+) (11)	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.249.706.S1_at	A	A1TS	POPTR_0008s06550	POPTR_0008s06550 (11)	scaffold_8:3900518-3901105(-) (11)	NA	O24412	Probable 26S proteasome non-ATPase regulatory subunit 7	AT5G05780.1	RP non-ATPase subunit 8A 	LOC_Os04g56646.1	"MEE34, putative, expressed"	Medtr5g089320.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.708.A1_s_at	A	A1TS	POPTR_0009s15280	POPTR_0009s15280 (11)	scaffold_9:11860622-11860822(-) (11)	NA	A6TF98	Bifunctional polymyxin resistance protein ArnA	AT1G08200.1	UDP-D-apiose/UDP-D-xylose synthase 2 	LOC_Os01g73790.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g137650.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.249.73.A1_at	A	A1TS	POPTR_0017s11940	POPTR_0017s11940 (11)	scaffold_17:12026706-12027630(+) (11)	NA	P46690	Gibberellin-regulated protein 4	AT5G15230.1	GAST1 protein homolog 4 	LOC_Os09g24840.2	"GASR10 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr6g012880.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.73.A1_s_at	A	A1TS	POPTR_0017s11940	POPTR_0017s11940 (11)	scaffold_17:12026527-12027505(+) (11)	NA	P46690	Gibberellin-regulated protein 4	AT5G15230.1	GAST1 protein homolog 4 	LOC_Os09g24840.2	"GASR10 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr6g012880.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.739.A1_at	A	A1TA	POPTR_0010s21280	POPTR_0010s21280 (9)	scaffold_10:18630377-18630532(-) (9)	NA	P09189	Heat shock cognate 70 kDa protein	AT5G02500.1	heat shock cognate protein 70-1 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.74.S1_a_at	A	A1TA	POPTR_0014s19660	POPTR_0014s19660 (10)	scaffold_10:4797218-4797338(-) (11)//scaffold_14:16977553-16977667(-) (9)//scaffold_14:17506799-17506919(+) (10)//scaffold_14:17520804-17520914(+) (10)//scaffold_14:17670839-17679286(+) (11)//scaffold_14:17679205-17679325(+) (10)//scaffold_17:2269493-2269556(+) (9)//scaffold_17:2280083-2280203(+) (11)//scaffold_17:2307998-2308118(+) (11)//scaffold_17:2331356-2331476(+) (11)//scaffold_17:2345567-2345678(+) (10)//scaffold_17:2368257-2368377(+) (11)//scaffold_422:3080-3200(+) (10)//scaffold_8:16193343-16193463(-) (10)//scaffold_9:114560-114674(-) (10)//scaffold_9:241666-241780(-) (10)//scaffold_9:319109-319229(-) (10)//scaffold_9:333194-333314(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.74.S1_x_at	A	A1TA	POPTR_0014s19660	POPTR_0014s19660 (10)	scaffold_10:4797219-4797423(-) (11)//scaffold_14:17520719-17520913(+) (10)//scaffold_14:17670754-17670942(+) (11)//scaffold_14:17679120-17679324(+) (11)//scaffold_17:2269361-2269555(+) (9)//scaffold_17:2279998-2280202(+) (11)//scaffold_17:2307913-2308117(+) (11)//scaffold_17:2331271-2331475(+) (11)//scaffold_17:2345487-2345677(+) (9)//scaffold_17:2358077-2368365(+) (11)//scaffold_422:2995-3199(+) (11)//scaffold_8:16193344-16193548(-) (11)	POPTR_0014s19790 (7)//POPTR_0017s03150 (7)//POPTR_0017s03215 (7)//POPTR_0017s03260 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.744.A1_s_at	A	A1TS	POPTR_0010s24480	POPTR_0010s24480 (11)	scaffold_10:20681588-20681701(-) (11)	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT5G04740.1	ACT domain-containing protein 	LOC_Os12g05650.1	"ACT domain containing protein, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.75.A1_x_at	A	A1TS	POPTR_0005s09450	POPTR_0005s09450 (11)	scaffold_5:6588381-6588461(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.758.S1_at	A	A1TS	POPTR_0014s19660	POPTR_0014s19660 (10)	scaffold_10:4797034-4797217(+) (10)//scaffold_14:16977369-16977552(+) (9)//scaffold_14:17506920-17507102(-) (10)//scaffold_14:17520915-17521097(-) (10)//scaffold_14:17562768-17562950(-) (10)//scaffold_14:17670944-17671126(-) (10)//scaffold_14:17679326-17679508(-) (10)//scaffold_17:2269557-2269739(-) (10)//scaffold_17:2280204-2280386(-) (10)//scaffold_17:2308119-2308301(-) (10)//scaffold_17:2319231-2319413(-) (10)//scaffold_17:2331477-2331659(-) (10)//scaffold_17:2345679-2345860(-) (9)//scaffold_17:2358285-2368402(-) (10)//scaffold_17:2368392-2368560(-) (9)//scaffold_422:3201-3383(-) (10)//scaffold_8:16161588-16161770(+) (10)//scaffold_8:16193160-16193342(+) (10)//scaffold_9:114412-114559(+) (9)//scaffold_9:241518-241665(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.759.A1_at	A	A2MS	POPTR_0006s18230	POPTR_0006s18230 (11)//POPTR_0006s18240 (11)	scaffold_6:16502739-16503170(+) (11)//scaffold_6:16541459-16541890(+) (11)	NA	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.249.76.S1_a_at	A	A1TS	POPTR_0016s01720	POPTR_0016s01720 (11)	scaffold_16:777842-777917(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g52250.1	"LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.772.S1_a_at	A	A1TS	POPTR_0018s02230	POPTR_0018s02230 (11)	scaffold_18:1990544-1990616(-) (11)	NA	NA	NA	AT4G32020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.775.A1_at	A	A2TA	POPTR_0019s14540	POPTR_0664s00220 (10)//POPTR_0019s14540 (10)	scaffold_19:15306358-15306587(-) (10)//scaffold_664:2319-2548(-) (10)//scaffold_664:5898-10419(-) (10)	POPTR_0664s00200 (8)	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.249.78.S1_x_at	A	A1TS	POPTR_0004s17610	POPTR_0004s17610 (11)	scaffold_4:17743689-17744181(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.249.782.S1_a_at	A	A1TS	POPTR_0013s01090	POPTR_0013s01090 (11)	scaffold_13:600095-601064(+) (11)	NA	P93508	Calreticulin	AT1G09210.1	calreticulin 1b 	LOC_Os07g14270.3	"calreticulin precursor protein, putative, expressed"	Medtr1g100460.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
PtpAffx.249.783.S1_at	A	A1MS	POPTR_0012s04090	POPTR_0012s04090 (11)	scaffold_12:3311373-3311807(+) (11)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
PtpAffx.249.791.S1_at	A	A1TA	POPTR_0006s29430	POPTR_0006s29430 (10)	scaffold_6:26793620-26795705(-) (10)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G31170.3	Protein kinase superfamily protein 	LOC_Os08g12750.1	"serine/threonine-protein kinase HT1, putative, expressed"	Medtr3g040790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.81.S1_x_at	A	A1TS	POPTR_0013s00340	POPTR_0013s00340 (10)	scaffold_13:108164-109103(+) (10)	NA	Q9ZNQ7	Hydrophobic protein RCI2A	AT3G05880.1	Low temperature and salt responsive protein family 	LOC_Os05g04700.1	"OsRCI2-6 - Hydrophobic protein LTI6B, expressed"	Medtr7g134790.1	Protein of unknown function UPF0057 	NA	NA	GO:0016021|integral to membrane
PtpAffx.249.821.S1_at	A	A1TS	POPTR_0017s06670	POPTR_0017s06670 (11)	scaffold_17:5113287-5113657(-) (11)	NA	NA	NA	AT4G15248.1	B-box type zinc finger family protein 	LOC_Os08g08120.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g103560.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.249.83.A1_x_at	A	A1TA	POPTR_0018s12270	POPTR_0018s12270 (11)	scaffold_18:12799037-12799453(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.837.A1_at	A	A1TS	POPTR_0027s00240	POPTR_0027s00240 (11)	scaffold_27:44162-44196(-) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.844.S1_at	A	A1TS	POPTR_0015s08620	POPTR_0015s08620 (9)	scaffold_15:9939919-9940032(+) (9)	NA	Q93YW0	"Protein EXECUTER 1, chloroplastic"	AT1G27510.1	Protein of unknown function (DUF3506) 	LOC_Os01g01790.1	expressed protein	Medtr3g113590.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.846.A1_s_at	A	A1TS	POPTR_0016s06030	POPTR_0016s06030 (11)	scaffold_16:3962900-3963068(+) (11)	NA	Q5I0H4	Transmembrane and coiled-coil domains protein 1	AT5G06660.1	"Protein of unknown function DUF106, transmembrane "	LOC_Os03g51160.2	"fb27, putative, expressed"	Medtr7g099900.1	"Transmembrane and coiled-coil domain-containing protein 1 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.849.A1_at	A	A1TS	POPTR_0003s06930	POPTR_0003s06930 (10)	scaffold_3:8489263-8489576(-) (10)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.249.85.A1_s_at	A	A1TS	POPTR_0009s06690	POPTR_0009s06690 (10)	scaffold_9:6425839-6426138(-) (10)	NA	O22342	"ADP,ATP carrier protein 1, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.851.A1_a_at	A	A1TS	POPTR_0001s00285	POPTR_0001s00285 (11)	scaffold_1:155397-155509(+) (11)//scaffold_738:528-618(+) (10)	POPTR_0738s00200 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.859.A1_at	A	A1TS	POPTR_0001s44440	POPTR_0001s44440 (11)	scaffold_1:44861089-44861126(+) (11)	NA	Q8H159	Polyubiquitin 10	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.865.A1_a_at	A	A1TS	POPTR_0010s04840	POPTR_0010s04840 (11)	scaffold_10:6026936-6027095(+) (11)	NA	NA	NA	AT1G27200.1	Domain of unknown function (DUF23) 	LOC_Os08g02850.1	"zinc finger family protein, putative, expressed"	Medtr5g038040.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.865.A1_at	A	A1TS	POPTR_0010s04840	POPTR_0010s04840 (9)	scaffold_10:6026834-6027151(+) (9)	NA	NA	NA	AT1G27200.1	Domain of unknown function (DUF23) 	LOC_Os08g02850.1	"zinc finger family protein, putative, expressed"	Medtr5g038040.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.87.A1_x_at	A	A1TS	POPTR_0001s26720	POPTR_0001s26720 (11)	scaffold_1:25734531-25734848(+) (11)	POPTR_0001s26680 (8)//POPTR_0001s26690 (8)//POPTR_0001s26760 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.249.88.S1_at	A	A3TS	POPTR_0008s21830	POPTR_0008s21830 (11)//POPTR_0017s03170 (11)//POPTR_0014s19780 (11)	scaffold_11:12877325-12877468(+) (9)//scaffold_14:17545236-17545392(+) (11)//scaffold_14:17595372-17595528(+) (11)//scaffold_14:17673864-17674020(+) (11)//scaffold_14:17696962-17697118(-) (11)//scaffold_14:17711920-17712076(-) (11)//scaffold_17:2271771-2271927(+) (11)//scaffold_17:2290510-2290666(+) (11)//scaffold_17:2310346-2310502(+) (11)//scaffold_17:2321450-2321606(+) (11)//scaffold_17:2335360-2335516(+) (11)//scaffold_17:2347899-2348055(+) (11)//scaffold_17:2360467-2360623(+) (11)//scaffold_8:16159399-16159555(-) (11)//scaffold_8:16170429-16170585(-) (11)//scaffold_8:16173089-16173245(-) (11)	POPTR_0014s19755 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.885.S1_at	A	A1MS	POPTR_0001s06360	POPTR_0001s06360 (10)	scaffold_1:4878838-4879360(-) (10)	NA	Q42586	Uridine 5'-monophosphate synthase	AT3G54470.1	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) 	LOC_Os01g72240.1	"uridine 5-monophosphate synthase, putative, expressed"	Medtr8g039740.1	Phosphoribosyltransferase; Orotidine 5-phosphate decarboxylase; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006207|'de novo' pyrimidine base biosynthetic process||GO:0009116|nucleoside metabolic process	GO:0004590|orotidine-5'-phosphate decarboxylase activity	NA
PtpAffx.249.9.A1_at	A	A4TS	POPTR_0010s00955	POPTR_0010s00955 (11)//POPTR_0010s01150 (11)//POPTR_0010s01160 (11)//POPTR_0010s01180 (10)	scaffold_10:771346-775704(-) (11)//scaffold_10:813385-813874(-) (11)//scaffold_10:862461-862950(+) (11)//scaffold_10:884284-884766(-) (10)	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.249.91.A1_at	A	A1TS	POPTR_0005s19580	POPTR_0005s19580 (11)	scaffold_5:18460837-18463372(-) (11)	NA	Q9LRH6	GATA transcription factor 25	AT4G24470.2	GATA-type zinc finger protein with TIFY domain 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149710.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.249.93.S1_at	A	A1TS	POPTR_0001s27480	POPTR_0001s27480 (11)	scaffold_1:26388787-26388825(-) (11)	NA	O22342	"ADP,ATP carrier protein 1, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.93.S1_x_at	A	A1TS	POPTR_0001s27480	POPTR_0001s27480 (11)	scaffold_1:26388095-26388866(-) (11)	NA	O22342	"ADP,ATP carrier protein 1, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.94.S1_s_at	A	A1TS	POPTR_0004s16740	POPTR_0004s16740 (11)	scaffold_4:17115682-17115889(+) (11)	NA	P43295	Probable cysteine proteinase A494	AT2G21430.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.249.95.S1_a_at	A	A1TS	POPTR_0005s25500	POPTR_0005s25500 (11)	scaffold_5:23734535-23735829(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G75500.2	Walls Are Thin 1 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g028570.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.249.96.S1_x_at	A	A1TS	POPTR_0006s01020	POPTR_0006s01020 (11)	scaffold_6:573685-582869(+) (11)	NA	Q00451	36.4 kDa proline-rich protein	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g07220.1	"LTPL128 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.97.A1_x_at	A	A1TS	POPTR_0005s15660	POPTR_0005s15660 (11)	scaffold_5:12263644-12263887(-) (11)	NA	P24007	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g17600.1	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.1	"Ribulose bisphosphate carboxylase, small chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
PtpAffx.249.99.A1_s_at	A	A1TS	POPTR_0014s11000	POPTR_0014s11000 (11)	scaffold_14:8195358-8195704(-) (11)	NA	A9P822	S-adenosylmethionine synthase 1	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.24900.1.A1_at	A	A1TS	POPTR_0015s12240	POPTR_0015s12240 (11)	scaffold_15:12585161-12585554(+) (11)	NA	Q8VYB1	Mediator of RNA polymerase II transcription subunit 31	AT5G19910.1	SOH1 family protein 	LOC_Os07g07020.2	"mediator of RNA polymerase II transcription subunit 31, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.24901.1.A1_at	A	A1TS	POPTR_0019s05130	POPTR_0019s05130 (10)	scaffold_19:5363152-5368145(-) (10)	NA	Q93YX4	5'-adenylylsulfate reductase-like 5	AT3G03860.1	APR-like 5 	LOC_Os03g59170.1	"OsAPRL5  adenosine 5'-phosphosulfate reductase-like OsAPRL5, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24905.1.S1_a_at	A	A1TS	POPTR_0016s00490	POPTR_0016s00490 (11)	scaffold_16:155797-156218(-) (11)	NA	NA	NA	AT4G15950.1	"RNA polymerase II, Rpb4, core protein "	LOC_Os02g49150.3	"RNA polymerase Rpb4, putative, expressed"	Medtr2g033110.1	RNA polymerase Rpb4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.24915.1.A1_a_at	A	A2TS	POPTR_0004s11230	POPTR_0017s13560 (11)//POPTR_0004s11230 (11)	scaffold_17:13680775-13681829(-) (11)//scaffold_4:9859669-9860730(+) (11)	NA	Q921Y2	U3 small nucleolar ribonucleoprotein protein IMP3	AT5G15750.1	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 	LOC_Os04g56670.2	"S4 domain containing protein, putative, expressed"	Medtr4g159820.1	"Ribosomal protein S4, bacterial and organelle form "	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
PtpAffx.24915.1.A1_at	A	A1TS	POPTR_0017s13560	POPTR_0017s13560 (10)	scaffold_17:13680597-13680935(-) (10)	NA	Q921Y2	U3 small nucleolar ribonucleoprotein protein IMP3	AT5G15750.1	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 	LOC_Os04g56670.2	"S4 domain containing protein, putative, expressed"	Medtr4g159820.1	"Ribosomal protein S4, bacterial and organelle form "	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
PtpAffx.24915.2.S1_at	A	A1TS	POPTR_0004s11230	POPTR_0004s11230 (11)	scaffold_4:9860594-9860983(+) (11)	NA	Q921Y2	U3 small nucleolar ribonucleoprotein protein IMP3	AT5G15750.1	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 	LOC_Os04g56670.2	"S4 domain containing protein, putative, expressed"	Medtr4g159820.1	"Ribosomal protein S4, bacterial and organelle form "	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
PtpAffx.24923.1.A1_at	A	A1TS	POPTR_0004s09800	POPTR_0004s09800 (11)	scaffold_4:8321580-8322997(+) (11)	NA	NA	NA	AT1G67060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). 	LOC_Os02g12870.1	expressed protein	Medtr7g093340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24926.1.A1_at	A	A1TS	POPTR_0012s04320	POPTR_0012s04320 (11)	scaffold_12:3536093-3536453(+) (11)	NA	P93008	DEAD-box ATP-dependent RNA helicase 21	AT2G33730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g50090.4	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	AC233669_14.1	"Helicase, C-terminal; ; AC233669.2 54226-56692 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.24928.1.S1_at	A	A1TS	POPTR_0008s03650	POPTR_0008s03650 (11)	scaffold_8:1984202-1984758(-) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G04250.2	Cysteine proteinases superfamily protein 	LOC_Os03g64219.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g120470.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24931.1.S1_at	A	A1MS	POPTR_0006s10710	POPTR_0006s10710 (11)	scaffold_6:8051420-8051842(+) (11)	NA	Q68FJ8	TOM1-like protein 2	AT2G38410.1	ENTH/VHS/GAT family protein 	LOC_Os05g39760.1	"VHS and GAT domain containing protein, expressed"	Medtr7g077730.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.24940.1.A1_at	A	A1TS	POPTR_0016s13670	POPTR_0016s13670 (11)	scaffold_16:12824036-12824575(-) (11)	NA	Q5XPJ9	Protein SCAR2	AT2G38440.1	SCAR homolog 2 	LOC_Os03g60240.1	"SCAR-like protein 1, putative, expressed"	Medtr7g077030.1	Actin-binding WH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24942.1.A1_at	A	A1MS	POPTR_0007s02620	POPTR_0007s02620 (11)	scaffold_7:1538682-1539117(+) (11)	NA	Q6H7U2	Zinc finger CCCH domain-containing protein 13	AT3G21810.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os02g06584.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.24943.1.A1_at	A	A1TS	POPTR_0003s17490	POPTR_0003s17490 (11)	scaffold_3:16828611-16828796(-) (11)	NA	Q9LRM7	"9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic"	AT3G24220.1	nine-cis-epoxycarotenoid dioxygenase 6 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24949.1.A1_at	A	A1MS	POPTR_0009s03260	POPTR_0009s03260 (9)	scaffold_9:3944775-3944937(+) (9)	NA	NA	NA	AT5G59790.1	Domain of unknown function (DUF966) 	LOC_Os01g62200.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g078980.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24963.1.A1_at	A	A1TS	POPTR_0008s17370	POPTR_0008s17370 (11)	scaffold_8:11653196-11653750(-) (11)	NA	NA	NA	AT1G04570.1	Major facilitator superfamily protein 	LOC_Os07g24230.1	"integral membrane transporter family protein, putative, expressed"	Medtr3g009870.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24965.1.S1_s_at	A	A1TS	POPTR_0010s15740	POPTR_0010s15740 (11)	scaffold_10:14862113-14862784(+) (11)	NA	P57741	Probable prefoldin subunit 3	AT5G49510.2	prefoldin 3 	LOC_Os12g37590.1	"prefoldin, putative, expressed"	Medtr2g037940.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.24972.1.A1_s_at	A	A1TS	POPTR_0005s23610	POPTR_0005s23610 (11)	scaffold_5:22334298-22334567(+) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24972.2.S1_at	A	A1TS	POPTR_0002s04910	POPTR_0002s04910 (11)	scaffold_2:3153942-3154111(-) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.24990.1.A1_at	A	A1TS	POPTR_0014s04810	POPTR_0014s04810 (11)	scaffold_14:3726560-3728311(+) (11)	NA	Q8L785	"Glycyl-tRNA synthetase 2, chloroplastic/mitochondrial"	AT3G48110.1	glycine-tRNA ligases 	LOC_Os06g01400.1	"glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006426|glycyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004820|glycine-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.25.1.S1_s_at	A	A1TS	POPTR_0005s25940	POPTR_0005s25940 (11)	scaffold_5:24126923-24127642(-) (11)	NA	Q54UB1	tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6	AT2G45730.1	eukaryotic initiation factor 3 gamma subunit family protein 	LOC_Os04g02150.2	"tRNA methyltransferase, putative, expressed"	Medtr1g030970.1	"Eukaryotic initiation factor 3, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.25004.1.A1_a_at	A	A1TS	POPTR_0004s06350	POPTR_0004s06350 (11)	scaffold_4:5066440-5066916(+) (11)	NA	NA	NA	AT5G46230.1	"Protein of unknown function, DUF538 "	LOC_Os01g11240.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25004.2.A1_at	A	A1TS	POPTR_0010s19550	POPTR_0010s19550 (11)	scaffold_10:17429555-17430213(-) (11)	NA	O81488	PHD finger protein At5g26210	AT5G05610.2	alfin-like 1 	LOC_Os05g07040.1	"PHD finger protein, putative, expressed"	AC235756_22.1	"Zinc finger, FYVE/PHD-type AC235756.1 164740-161152 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25004.4.S1_a_at	A	A2TS	POPTR_0016s14290	POPTR_0016s14290 (11)//POPTR_0016s14300 (10)	scaffold_16:13549221-13549468(+) (11)//scaffold_16:13558792-13559036(-) (10)	NA	Q43019	Non-specific lipid-transfer protein 3	AT5G01870.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os12g02330.2	"LTPL13 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036490.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25004.5.A1_a_at	A	A1TS	POPTR_0010s19550	POPTR_0010s19550 (11)	scaffold_10:17430268-17433459(-) (11)	NA	O81488	PHD finger protein At5g26210	AT5G05610.2	alfin-like 1 	LOC_Os05g07040.1	"PHD finger protein, putative, expressed"	AC235756_22.1	"Zinc finger, FYVE/PHD-type AC235756.1 164740-161152 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25006.1.S1_at	A	A1TS	POPTR_0004s14810	POPTR_0004s14810 (11)	scaffold_4:15445397-15445776(+) (11)	NA	P38500	"Ferredoxin--nitrite reductase, chloroplastic"	AT2G15620.1	nitrite reductase 1 	LOC_Os01g25484.2	"ferredoxin--nitrite reductase, putative, expressed"	Medtr4g129810.1	Ferredoxin-nitrite reductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0051536|iron-sulfur cluster binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.25010.1.A1_at	A	A1TS	POPTR_0463s00200	POPTR_0463s00200 (10)	scaffold_10:12995219-12995765(+) (10)//scaffold_188:6670-13961(-) (11)//scaffold_463:1149-1695(-) (10)	POPTR_0188s00220 (6)//POPTR_0010s13100 (6)	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38280.1	PR5-like receptor kinase 	LOC_Os04g09770.1	"Ser/Thr protein kinase, putative"	Medtr1g140290.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.25011.1.S1_s_at	A	A1TS	POPTR_0015s07890	POPTR_0015s07890 (11)	scaffold_15:9162110-9162465(-) (11)	NA	Q9LV16	"Probable beta-1,3-galactosyltransferase 19"	AT5G62620.1	Galactosyltransferase family protein 	LOC_Os03g58920.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g038320.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.2502.2.S1_s_at	A	A1TS	POPTR_0004s04520	POPTR_0004s04520 (11)	scaffold_4:3270312-3270632(+) (11)	NA	NA	NA	AT1G28250.1	unknown protein; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g20410.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25021.1.S1_at	A	A1TS	POPTR_0010s18590	POPTR_0010s18590 (11)	scaffold_10:16801352-16801612(-) (11)	NA	P62313	U6 snRNA-associated Sm-like protein LSm6	AT2G43810.2	Small nuclear ribonucleoprotein family protein 	LOC_Os02g30624.2	"LSM domain containing protein, expressed"	Medtr4g110140.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25022.2.S1_a_at	A	A1TS	POPTR_0006s08240	POPTR_0006s08240 (11)	scaffold_6:5979986-5981835(-) (11)	NA	NA	NA	AT3G53630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g17140.1	expressed protein	Medtr7g118400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25022.2.S1_at	A	A1TS	POPTR_0006s08240	POPTR_0006s08240 (11)	scaffold_6:5979884-5982035(-) (11)	NA	NA	NA	AT3G53630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g17140.1	expressed protein	Medtr7g118400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25029.1.S1_at	A	A1TS	POPTR_0009s10750	POPTR_0009s10750 (11)	scaffold_9:9154078-9154513(-) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT3G48700.1	carboxyesterase 13 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.25033.1.A1_at	A	A1TS	POPTR_0014s17790	POPTR_0014s17790 (11)	scaffold_14:14125889-14126279(+) (11)	NA	O22466	WD-40 repeat-containing protein MSI1	AT5G58230.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25035.1.A1_at	A	A1TS	POPTR_0001s04990	POPTR_0001s04990 (11)	scaffold_1:3855712-3856198(+) (11)	POPTR_0001s05000 (6)	P48630	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.2504.1.S1_at	A	A1TS	POPTR_0015s10140	POPTR_0015s10140 (11)	scaffold_15:11164991-11165656(+) (11)	NA	Q9STM6	GDSL esterase/lipase At3g48460	AT3G48460.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g62740.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g109970.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.25041.1.S1_at	A	A1TS	POPTR_0006s15760	POPTR_0006s15760 (11)	scaffold_6:13419055-13419733(-) (11)	NA	P27061	Acid phosphatase 1	AT4G29260.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr8g016170.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.25042.1.A1_at	A	A1TS	POPTR_0018s12710	POPTR_0018s12710 (11)	scaffold_18:13220955-13221520(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25043.1.A1_at	A	A1TS	POPTR_0012s09050	POPTR_0012s09050 (11)	scaffold_12:10121810-10122331(+) (11)	NA	NA	NA	AT5G63050.1	embryo defective 2759 	NA	NA	Medtr3g114300.1	EMB2759 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25051.1.A1_at	A	A1TS	POPTR_0012s10830	POPTR_0012s10830 (9)	scaffold_12:11526469-11527766(-) (9)	NA	Q8VHC8	Lysosomal alpha-mannosidase	AT5G13980.2	Glycosyl hydrolase family 38 protein 	LOC_Os11g32260.2	"lysosomal alpha-mannosidase precursor, putative, expressed"	Medtr3g151240.2	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0044262|cellular carbohydrate metabolic process||GO:0006013|mannose metabolic process||GO:0044281|small molecule metabolic process	GO:0008270|zinc ion binding||GO:0004559|alpha-mannosidase activity	NA
PtpAffx.25054.1.A1_at	A	A1TS	POPTR_0018s10880	POPTR_0018s10880 (10)	scaffold_18:11743887-11744008(-) (11)	NA	NA	NA	AT2G23810.1	tetraspanin8 	LOC_Os09g25760.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.25062.1.A1_at	A	A1TS	POPTR_0010s12480	POPTR_0010s12480 (11)	scaffold_10:12510055-12510554(-) (11)	NA	NA	NA	AT1G71050.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os09g20000.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g025130.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.25065.1.A1_at	A	A1TS	POPTR_0018s12260	POPTR_0018s12260 (11)	scaffold_18:12793080-12794596(-) (11)	NA	Q9WTV7	E3 ubiquitin-protein ligase RLIM	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25068.1.A1_at	A	A1TS	POPTR_0005s23970	POPTR_0005s23970 (11)	scaffold_5:22643750-22644476(-) (11)	NA	O24542	Auxin-induced protein 22D	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os12g40900.1	"OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g083410.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.25069.1.A1_at	A	A1TS	POPTR_0006s22130	POPTR_0006s22130 (11)	scaffold_1173:5847-5893(+) (11)//scaffold_6:21195901-21195947(-) (11)	NA	Q9C5R8	"2-Cys peroxiredoxin BAS1-like, chloroplastic"	AT5G06290.1	2-cysteine peroxiredoxin B 	LOC_Os02g33450.2	"peroxiredoxin, putative, expressed"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.25072.1.A1_at	A	A1TS	POPTR_0012s03430	POPTR_0012s03430 (11)	scaffold_12:2716175-2716799(+) (11)	NA	P0C042	Uncharacterized protein At4g15970	AT1G14590.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os04g49590.1	"regulatory protein, putative, expressed"	Medtr6g090280.1	"Uncharacterized protein At4g15970, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25079.2.S1_a_at	A	A1TS	POPTR_0002s25350	POPTR_0002s25350 (11)	scaffold_2:22447205-22447670(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25080.1.A1_s_at	A	A1TS	POPTR_0005s11120	POPTR_0005s11120 (11)	scaffold_5:8055807-8057802(+) (11)	NA	Q6ZQ58	La-related protein 1	AT4G35890.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g64190.1	"la domain containing protein, putative, expressed"	Medtr5g022760.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25085.1.S1_s_at	A	A1TS	POPTR_0012s09730	POPTR_0012s09730 (11)	scaffold_12:10680602-10681626(-) (11)	NA	O94514	Nucleolar protein 56	AT1G56110.1	homolog of nucleolar protein NOP56 	LOC_Os03g22880.1	"nucleolar protein 5A, putative, expressed"	Medtr8g109560.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOP5, N-terminal; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25088.1.S1_at	A	A1TS	POPTR_0015s12760	POPTR_0015s12760 (11)	scaffold_15:12983860-12984195(-) (11)	NA	Q5RCE6	Ribosomal L1 domain-containing protein 1	AT3G58660.1	Ribosomal protein L1p/L10e family 	LOC_Os05g48422.1	"60S ribosomal protein-related, putative, expressed"	Medtr2g076720.1	Ribosomal protein L1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25090.1.S1_at	A	A1MS	POPTR_0004s23810	POPTR_0004s23810 (10)	scaffold_4:22438972-22439284(-) (10)	NA	Q6DEY1	Survival of motor neuron-related-splicing factor 30	AT2G02570.4	nucleic acid binding;RNA binding 	LOC_Os08g01840.1	"nucleic acid binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25097.1.A1_at	A	A1TS	POPTR_0009s12850	POPTR_0009s12850 (11)	scaffold_9:10410219-10410621(-) (11)	NA	P52418	"Amidophosphoribosyltransferase, chloroplastic"	AT4G34740.1	GLN phosphoribosyl pyrophosphate amidotransferase 2 	LOC_Os05g35580.1	"amidophosphoribosyltransferase, chloroplast precursor, putative, expressed"	Medtr4g097540.1	Amidophosphoribosyl transferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.251.1.A1_s_at	A	A1TS	POPTR_0014s15330	POPTR_0014s15330 (11)	scaffold_14:11415742-11415950(-) (11)	NA	Q7DFU6	Putative uncharacterized protein yghX	AT2G32520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g34700.1	"dienelactone hydrolase family protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.2510.3.A1_a_at	A	A1TS	POPTR_0007s10570	POPTR_0007s10570 (9)	scaffold_7:10581793-10583109(-) (9)	NA	Q9FGQ7	Cyclin-D3-2	AT5G67260.1	CYCLIN D3;2 	LOC_Os07g42860.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.25111.1.A1_at	A	A1TS	POPTR_0001s24250	POPTR_0001s24250 (11)	scaffold_1:23601602-23601905(+) (11)	NA	NA	NA	AT2G37430.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g02390.1	"ZOS5-02 - C2H2 zinc finger protein, expressed"	Medtr7g024970.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.25113.1.A1_at	A	A1TS	POPTR_0001s29310	POPTR_0001s29310 (10)	scaffold_1:28032393-28032802(-) (10)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.25116.1.A1_at	A	A1TS	POPTR_0016s11760	POPTR_0016s11760 (10)	scaffold_16:10938608-10939029(-) (10)	NA	Q9M391	Ataxin-3 homolog	AT3G54130.1	Josephin family protein 	LOC_Os01g63250.1	"josephin, putative, expressed"	Medtr4g012130.1	Machado-Joseph disease protein MJD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25119.1.S1_at	A	A1TS	POPTR_0015s04160	POPTR_0015s04160 (11)	scaffold_15:4200648-4201128(+) (11)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT1G48650.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.25124.1.A1_at	A	A1TS	POPTR_0010s21610	POPTR_0010s21610 (11)	scaffold_10:18820170-18820594(+) (11)	NA	Q54JE4	"2-oxoglutarate dehydrogenase, mitochondrial"	AT5G65750.1	"2-oxoglutarate dehydrogenase, E1 component "	LOC_Os07g49520.1	"2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed"	Medtr7g025160.1	"2-oxoglutarate dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.25137.1.A1_at	A	A1TS	POPTR_0002s10050	POPTR_0002s10050 (10)	scaffold_2:7213076-7213428(-) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G22460.1	O-fucosyltransferase family protein 	LOC_Os06g11600.3	"growth regulator related protein, putative, expressed"	Medtr3g150330.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25139.1.A1_at	A	A1MS	POPTR_0006s13120	POPTR_0006s13120 (9)	scaffold_6:10335428-10335485(+) (9)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25139.1.A1_s_at	A	A1MS	POPTR_0006s13120	POPTR_0006s13120 (11)	scaffold_6:10334933-10335376(+) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25142.1.A1_at	A	A1TS	POPTR_0010s20920	POPTR_0010s20920 (11)	scaffold_10:18339413-18339509(-) (11)	NA	Q02790	Peptidyl-prolyl cis-trans isomerase FKBP4	AT3G55520.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os05g38370.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g087660.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.25142.2.A1_at	A	A1TS	POPTR_0008s05810	POPTR_0008s05810 (11)	scaffold_8:3389034-3390520(+) (11)	NA	P27124	Peptidyl-prolyl cis-trans isomerase FKBP4	AT3G55520.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os05g38370.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g087660.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.2515.1.A1_a_at	A	A1TS	POPTR_0019s07830	POPTR_0019s07830 (11)	scaffold_19:9062115-9062897(+) (11)	NA	Q9DBY1	E3 ubiquitin-protein ligase synoviolin	AT3G16090.1	RING/U-box superfamily protein 	LOC_Os06g19680.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g007790.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25152.1.S1_at	A	A1TS	POPTR_0007s02620	POPTR_0007s02620 (9)	scaffold_7:1543222-1544522(+) (9)	NA	Q6H7U2	Zinc finger CCCH domain-containing protein 13	AT3G21810.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os02g06584.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.25159.1.A1_at	A	A1MS	POPTR_0002s10100	POPTR_0002s10100 (10)	scaffold_2:7268628-7268911(+) (10)	NA	Q3UVG3	Protein FAM91A1	AT1G35220.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 313 Blast hits to 185 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). 	LOC_Os01g19760.1	expressed protein	Medtr5g093200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25163.1.A1_a_at	A	A2TS	POPTR_0002s20120	POPTR_0014s11990 (11)//POPTR_0002s20120 (11)	scaffold_14:8878240-8878395(+) (11)//scaffold_2:16069836-16069991(+) (11)	NA	Q8VYF4	Probable galacturonosyltransferase-like 7	AT3G62660.1	galacturonosyltransferase-like 7 	LOC_Os03g18890.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g132630.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.25163.1.A1_at	A	A1TS	POPTR_0014s11990	POPTR_0014s11990 (11)	scaffold_14:8878123-8878540(+) (11)	NA	Q8VYF4	Probable galacturonosyltransferase-like 7	AT3G62660.1	galacturonosyltransferase-like 7 	LOC_Os03g18890.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g132630.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.25163.2.A1_at	A	A1TS	POPTR_0002s20120	POPTR_0002s20120 (11)	scaffold_2:16069694-16070157(+) (11)	NA	Q8VYF4	Probable galacturonosyltransferase-like 7	AT3G62660.1	galacturonosyltransferase-like 7 	LOC_Os03g18890.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g132630.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.25167.1.A1_s_at	A	A1TS	POPTR_0005s16020	POPTR_0005s16020 (11)	scaffold_5:12672427-12672989(-) (11)	NA	Q9FEL6	Auxin transporter-like protein 3	AT1G77690.1	like AUX1 3 	LOC_Os03g14080.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g097960.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25167.2.A1_at	A	A1TS	POPTR_0002s08750	POPTR_0002s08750 (11)	scaffold_2:6142619-6142981(-) (11)	NA	Q9FEL6	Auxin transporter-like protein 3	AT1G77690.1	like AUX1 3 	LOC_Os03g14080.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g097960.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2517.1.A1_s_at	A	A1TS	POPTR_0015s04290	POPTR_0015s04290 (9)	scaffold_15:4343643-4344189(-) (11)	NA	P90587	66 kDa stress protein	AT3G18060.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g03510.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g155430.1	"66 kDa stress protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25173.1.A1_a_at	A	A1TS	POPTR_0006s12150	POPTR_0006s12150 (11)	scaffold_6:9308378-9308894(+) (11)	NA	O48921	"Cytochrome P450 97B2, chloroplastic"	AT3G53130.1	Cytochrome P450 superfamily protein 	LOC_Os10g39930.2	"cytochrome P450 97B2, putative, expressed"	Medtr1g074260.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.25178.1.A1_at	A	A1TA	POPTR_0004s09480	POPTR_0004s09480 (9)	scaffold_4:8005897-8006152(+) (9)	NA	Q9C9N5	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830	AT2G01210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g33090.1	expressed protein	Medtr7g076330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.25179.1.A1_at	A	A1TS	POPTR_0002s03280	POPTR_0002s03280 (11)	scaffold_2:2014790-2015458(+) (11)	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.25179.2.S1_at	A	A1TS	POPTR_0005s25320	POPTR_0005s25320 (11)	scaffold_5:23620615-23620924(-) (11)	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.25183.1.S1_at	A	A1TS	POPTR_0010s24390	POPTR_0010s24390 (11)	scaffold_10:20624634-20626026(-) (11)	NA	Q9LIG6	"NifU-like protein 4, mitochondrial"	AT3G20970.1	NFU domain protein 4 	LOC_Os05g06330.1	"nifU, putative, expressed"	Medtr3g098170.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.25187.1.S1_at	A	A1TS	POPTR_0001s38060	POPTR_0001s38060 (9)	scaffold_1:37103449-37103841(+) (9)	NA	Q8LAS7	Calcineurin B-like protein 2	AT5G55990.1	calcineurin B-like protein 2 	LOC_Os03g42840.1	"calcineurin B, putative, expressed"	Medtr5g104010.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25187.2.S1_at	A	A1TS	POPTR_0011s09720	POPTR_0011s09720 (10)	scaffold_11:12107011-12107074(+) (10)	NA	Q8LEM7	Calcineurin B-like protein 3	AT4G26570.1	calcineurin B-like 3 	LOC_Os03g42840.1	"calcineurin B, putative, expressed"	Medtr5g104010.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25191.1.A1_at	A	A1TS	POPTR_0013s07530	POPTR_0013s07530 (11)	scaffold_13:6345060-6345262(+) (11)	NA	Q0WQG8	GPCR-type G protein 2	AT4G27630.2	GPCR-type G protein 2 	LOC_Os04g51180.1	"GPR89A, putative, expressed"	Medtr5g005620.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.252.1.A1_at	A	A1TS	POPTR_0011s10920	POPTR_0011s10920 (11)	scaffold_11:13488316-13488351(+) (11)	NA	Q54XK2	Protein transport protein Sec61 subunit alpha	AT2G34250.2	SecY protein transport family protein 	LOC_Os03g11440.1	"protein transport protein Sec61 subunit alpha, putative, expressed"	Medtr8g092670.1	SecY protein; ABC transporter related 	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
PtpAffx.25202.1.A1_at	A	A1TS	POPTR_0016s00780	POPTR_0016s00780 (11)	scaffold_16:288487-288989(-) (11)	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os03g29970.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr5g103350.1	"Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone "	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.2522.1.A1_a_at	A	A1TS	POPTR_0004s18880	POPTR_0004s18880 (11)	scaffold_4:18612871-18613308(-) (11)	NA	P16061	Endochitinase WIN8	AT3G12500.1	basic chitinase 	LOC_Os05g33140.1	"CHIT5 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.2522.4.S1_at	A	A1TA	POPTR_0004s18880	POPTR_0004s18880 (11)	scaffold_4:18612890-18613098(+) (11)	NA	P16061	Endochitinase WIN8	AT3G12500.1	basic chitinase 	LOC_Os05g33140.1	"CHIT5 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.25223.1.A1_at	A	A1TS	POPTR_0005s09130	POPTR_0005s09130 (9)	scaffold_5:6390470-6390692(+) (9)	NA	Q6DJC8	Transmembrane protein 53-B	AT3G19970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g51390.2	expressed protein	Medtr5g020580.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25225.1.S1_s_at	A	A2TS	POPTR_0006s11040	POPTR_0006s11040 (11)//POPTR_0016s14550 (11)	scaffold_16:13742286-13742450(-) (11)//scaffold_6:8364027-8364191(-) (11)	NA	Q9LZV3	"Mannan endo-1,4-beta-mannosidase 6"	AT5G01930.1	Glycosyl hydrolase superfamily protein 	LOC_Os05g25480.1	"OsMan06 - Endo-Beta-Mannanase, expressed"	Medtr8g005200.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25229.1.A1_at	A	A1TS	POPTR_0025s00390	POPTR_0025s00390 (11)	scaffold_25:141933-142306(-) (11)	NA	Q52T38	S-acyltransferase TIP1	AT5G20350.1	Ankyrin repeat family protein with DHHC zinc finger domain 	LOC_Os06g43680.1	"palmitoyltransferase TIP1, putative, expressed"	Medtr8g122240.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.25229.2.A1_at	A	A1TS	POPTR_0006s06050	POPTR_0006s06050 (11)	scaffold_6:4303394-4303871(-) (11)	NA	Q52T38	S-acyltransferase TIP1	AT5G20350.1	Ankyrin repeat family protein with DHHC zinc finger domain 	LOC_Os06g43680.1	"palmitoyltransferase TIP1, putative, expressed"	Medtr8g122240.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.25250.1.A1_a_at	A	A1TS	POPTR_0010s14250	POPTR_0010s14250 (11)	scaffold_10:13914561-13914778(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25250.3.S1_s_at	A	A1TS	POPTR_0010s14240	POPTR_0010s14240 (11)	scaffold_10:13912326-13914470(+) (11)	NA	NA	NA	AT1G68730.1	Zim17-type zinc finger protein 	LOC_Os01g42050.1	"DNL zinc finger domain containing protein, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25261.1.A1_at	A	A1TS	POPTR_0015s12270	POPTR_0015s12270 (10)	scaffold_15:12605635-12605973(+) (10)	NA	NA	NA	AT5G51150.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os07g31260.1	expressed protein	Medtr1g087060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25261.2.S1_s_at	A	A1TS	POPTR_0012s11520	POPTR_0012s11520 (11)	scaffold_12:11917185-11917683(+) (11)	NA	Q6GQ39	Transmembrane protein 135	AT5G51150.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os07g31260.1	expressed protein	Medtr1g087060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25276.1.A1_at	A	A1TS	POPTR_0002s23050	POPTR_0002s23050 (10)	scaffold_2:20412232-20412637(+) (10)	NA	Q9SDQ4	Glutamate receptor 3.7	AT2G32400.1	glutamate receptor 5 	LOC_Os06g46670.2	"glutamate receptor, putative, expressed"	Medtr2g103930.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.25279.1.A1_at	A	A1TS	POPTR_0002s17660	POPTR_0002s17660 (11)	scaffold_2:13483051-13483819(-) (11)	NA	P0C8A0	Pentatricopeptide repeat-containing protein At3g49730	AT3G49730.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g51840.1	"PPR repeat containing protein, expressed"	Medtr1g137270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25286.1.S1_at	A	A1TS	POPTR_0001s18330	POPTR_0001s18330 (11)	scaffold_1:15377854-15377897(-) (11)//scaffold_1872:1717-1760(+) (11)	NA	O24461	Ras-related protein Rab7	AT3G16100.1	RAB GTPase homolog G3C 	LOC_Os01g12730.1	"ras-related protein, putative, expressed"	Medtr4g009230.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.25308.1.S1_a_at	A	A1TS	POPTR_0626s00200	POPTR_0626s00200 (11)	scaffold_626:4863-5091(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25308.1.S1_x_at	A	A1TS	POPTR_0626s00200	POPTR_0626s00200 (11)	scaffold_626:4863-5179(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25312.1.A1_at	A	A1TS	POPTR_0006s19620	POPTR_0006s19620 (11)	scaffold_6:18660355-18660838(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2533.1.A1_at	A	A1TS	POPTR_0001s06390	POPTR_0001s06390 (11)	scaffold_1:4894748-4894982(-) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G13810.1	Glutaredoxin family protein 	LOC_Os03g24030.1	"glutaredoxin, putative, expressed"	Medtr3g020120.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.25332.1.S1_at	A	A1TS	POPTR_0030s00440	POPTR_0030s00440 (11)	scaffold_30:185373-186355(+) (11)	NA	Q9M081	Protein transport protein Sec24-like At4g32640	AT4G32640.2	Sec23/Sec24 protein transport family protein 	LOC_Os11g29200.1	"protein transport protein, putative, expressed"	AC235094_10.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region AC235094.1 49157-53293 E EGN_Mt090430 200"	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.25334.1.S1_a_at	A	A1TS	POPTR_0005s17600	POPTR_0005s17600 (11)	scaffold_5:15191712-15191853(+) (11)	NA	Q9SE96	GEM-like protein 1	AT1G28200.1	FH interacting protein 1 	LOC_Os03g08860.1	"GRAM domain containing protein, expressed"	Medtr3g148890.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25334.1.S1_at	A	A1TS	POPTR_0005s17600	POPTR_0005s17600 (11)	scaffold_5:15189982-15191682(+) (11)	POPTR_0002s10320 (8)	Q9SE96	GEM-like protein 1	AT1G28200.1	FH interacting protein 1 	LOC_Os03g08860.1	"GRAM domain containing protein, expressed"	Medtr3g148890.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25334.2.S1_at	A	A1TS	POPTR_0005s17600	POPTR_0005s17600 (10)	scaffold_5:15191730-15191991(+) (10)	NA	Q9SE96	GEM-like protein 1	AT1G28200.1	FH interacting protein 1 	LOC_Os03g08860.1	"GRAM domain containing protein, expressed"	Medtr3g148890.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25342.1.S1_at	A	A1TS	POPTR_0010s12530	POPTR_0010s12530 (11)	scaffold_10:12544138-12545457(+) (11)	NA	Q9ZU35	ABC transporter G family member 7	AT2G01320.1	ABC-2 type transporter family protein 	LOC_Os01g03144.1	"white-brown complex homolog protein 7, putative, expressed"	Medtr1g137310.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.25342.3.S1_s_at	A	A1TS	POPTR_0009s15810	POPTR_0009s15810 (11)	scaffold_9:12157775-12158482(-) (11)	NA	Q39054	Molybdopterin biosynthesis protein CNX1	AT5G20990.1	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) 	LOC_Os04g56620.1	"molybdopterin biosynthesis protein CNX1, putative, expressed"	Medtr5g094600.1	"Bifunctional molybdenum cofactor molybdenum incorporation/glycine receptor, gephyrin "	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.25370.1.A1_at	A	A1TS	POPTR_0017s00380	POPTR_0017s00380 (11)	scaffold_17:118655-119082(+) (11)	NA	NA	NA	AT2G31890.1	RAP 	LOC_Os03g31150.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25374.1.S1_a_at	A	A1TS	POPTR_0001s45370	POPTR_0001s45370 (11)	scaffold_1:45869114-45869662(-) (11)	NA	NA	NA	AT5G42110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25383.2.A1_at	A	A1TS	POPTR_0006s20860	POPTR_0006s20860 (11)	scaffold_6:19889265-19889650(-) (11)	NA	Q9M2P4	E3 ubiquitin-protein ligase SINAT2	AT3G58040.1	seven in absentia of Arabidopsis 2 	LOC_Os05g14860.1	"seven in absentia protein family domain containing protein, expressed"	Medtr7g112270.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.25393.1.S1_at	A	A1TS	POPTR_0003s19560	POPTR_0003s19560 (11)	scaffold_3:18257103-18257789(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g16620.5	expressed protein	Medtr3g006210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.254.1.S1_s_at	A	A1TS	POPTR_0014s11050	POPTR_0014s11050 (11)	scaffold_14:8230586-8230950(-) (11)	NA	NA	NA	AT2G47115.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g46430.2	expressed protein	Medtr1g106050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.254.2.S1_at	A	A1TS	POPTR_0002s19080	POPTR_0002s19080 (11)	scaffold_2:14988420-14988820(-) (11)	NA	NA	NA	AT2G47115.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g46430.2	expressed protein	Medtr1g106050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.254.3.S1_at	A	A1MS	POPTR_0014s11050	POPTR_0014s11050 (11)	scaffold_14:8230799-8230919(-) (11)	NA	NA	NA	AT2G47115.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g46430.2	expressed protein	Medtr1g106050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25404.1.S1_at	A	A1TS	POPTR_0001s42990	POPTR_0001s42990 (9)	scaffold_1:43048696-43049473(-) (9)	NA	Q39199	"DNA repair protein recA homolog 1, chloroplastic"	AT1G79050.1	recA DNA recombination family protein 	LOC_Os03g43850.1	"recA protein, putative, expressed"	Medtr2g046210.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25408.1.S1_s_at	A	A1TS	POPTR_0017s00950	POPTR_0017s00950 (11)	scaffold_17:697660-697815(-) (11)	NA	Q9FLX7	"Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial"	AT5G52840.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os03g19890.1	"NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed"	NA	NA	GO:0022904|respiratory electron transport chain	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH"""	GO:0005743|mitochondrial inner membrane
PtpAffx.2542.1.S1_at	A	A1TS	POPTR_0003s15710	POPTR_0003s15710 (10)	scaffold_3:15447400-15447842(-) (10)	NA	NA	NA	AT5G47870.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g63450.2	"snRK1-interacting protein 1, putative, expressed"	Medtr4g041390.1	"SnRK1-interacting protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2542.2.S1_a_at	A	A2TS	POPTR_0001s12550	POPTR_0001s12550 (11)//POPTR_0003s15710 (11)	scaffold_1:9731348-9733158(-) (11)//scaffold_3:15447966-15451645(-) (11)	NA	NA	NA	AT5G47870.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g63450.2	"snRK1-interacting protein 1, putative, expressed"	Medtr4g041390.1	"SnRK1-interacting protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2542.2.S1_at	A	A1TS	POPTR_0001s12550	POPTR_0001s12550 (11)	scaffold_1:9730926-9732652(-) (11)	NA	NA	NA	AT5G47870.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g63450.2	"snRK1-interacting protein 1, putative, expressed"	Medtr4g041390.1	"SnRK1-interacting protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2543.1.S1_at	A	A1TS	POPTR_0008s15630	POPTR_0008s15630 (11)	scaffold_8:10400631-10403197(+) (11)	NA	Q43468	Heat shock protein STI	AT1G04190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g41190.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr5g012180.1	Heat shock chaperonin-binding; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25432.1.S1_x_at	A	A1TS	POPTR_0008s13040	POPTR_0008s13040 (11)	scaffold_8:8497468-8498288(-) (11)	NA	Q9ZVF3	MLP-like protein 328	AT1G14930.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr1g034930.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.25437.1.S1_at	A	A1MS	POPTR_0014s01240	POPTR_0014s01240 (10)	scaffold_14:1219746-1220938(+) (11)	NA	Q9ZUU2	"UPF0308 protein At2g37240, chloroplastic"	AT5G65840.1	Thioredoxin superfamily protein 	LOC_Os03g51950.1	expressed protein	Medtr8g102020.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25444.1.S1_s_at	A	A3TS	POPTR_0010s07070	POPTR_0010s07070 (11)//POPTR_0010s07170 (11)//POPTR_0010s07090 (10)	scaffold_10:8297280-8297568(-) (11)//scaffold_10:8305556-8305836(-) (10)//scaffold_10:8330878-8331163(+) (11)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os03g39850.1	"glutathione S-transferase, putative, expressed"	Medtr4g081450.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25444.1.S1_x_at	A	A2TS	POPTR_0010s07070	POPTR_0010s07070 (11)//POPTR_0010s07170 (10)	scaffold_10:8297215-8297626(-) (11)//scaffold_10:8330820-8331228(+) (10)	POPTR_0010s07090 (8)	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os03g39850.1	"glutathione S-transferase, putative, expressed"	Medtr4g081450.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25444.2.S1_s_at	A	A1TS	POPTR_0005s17480	POPTR_0005s17480 (11)	scaffold_5:15014850-15015324(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G65380.1	MATE efflux family protein 	LOC_Os03g08900.1	"MATE efflux family protein, putative, expressed"	Medtr3g150090.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.25447.1.S1_at	A	A2TS	POPTR_0010s18550	POPTR_0010s18550 (11)//POPTR_0010s18540 (9)	scaffold_10:16748078-16756094(+) (11)//scaffold_10:16755711-16756267(+) (9)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.2545.2.S1_a_at	A	A1TS	POPTR_0004s20740	POPTR_0004s20740 (11)	scaffold_4:20172640-20172800(+) (11)	NA	O49884	60S ribosomal protein L30	AT1G36240.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25457.1.S1_at	A	A1TS	POPTR_0001s15420	POPTR_0001s15420 (11)	scaffold_1:12262709-12262926(+) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT4G17486.1	PPPDE putative thiol peptidase family protein 	LOC_Os03g01130.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr5g013160.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25457.2.S1_at	A	A1TS	POPTR_0003s07810	POPTR_0003s07810 (11)	scaffold_3:9337770-9339246(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT5G47310.1	PPPDE putative thiol peptidase family protein 	LOC_Os03g01130.2	"ethylene-responsive element-binding protein, putative, expressed"	Medtr5g013150.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25473.1.S1_at	A	A1TS	POPTR_0003s16550	POPTR_0003s16550 (11)	scaffold_3:16135641-16136093(+) (11)	NA	NA	NA	AT5G13140.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os09g32988.1	"POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr7g148430.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2548.2.A1_s_at	A	A1TS	POPTR_0017s10720	POPTR_0017s10720 (11)	scaffold_17:10224316-10224749(-) (11)	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25502.1.A1_at	A	A1TA	POPTR_0006s19120	POPTR_0006s19120 (10)	scaffold_6:18045409-18045810(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2551.1.S1_at	A	A1TS	POPTR_0001s13550	POPTR_0001s13550 (11)	scaffold_1:10615757-10616325(+) (11)	NA	NA	NA	AT1G27990.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 86 Blast hits to 86 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os04g31710.1	expressed protein	AC235665_52.2	hypothetical protein AC235665.2 282555-280724 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25513.1.A1_at	A	A1TS	POPTR_0010s16570	POPTR_0010s16570 (11)	scaffold_10:15495636-15496072(+) (11)	NA	Q9ZPR4	Magnesium transporter MRS2-5	AT2G03620.2	magnesium transporter 3 	LOC_Os06g44150.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr5g048220.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25530.1.S1_at	A	A1MS	POPTR_0010s14060	POPTR_0010s14060 (11)	scaffold_10:13766039-13766552(+) (11)	NA	NA	NA	AT1G49000.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g116380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25544.1.S1_at	A	A1TS	POPTR_0004s04390	POPTR_0004s04390 (11)	scaffold_4:3144603-3145075(-) (11)	NA	NA	NA	AT1G53035.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25548.1.S1_a_at	A	A2TS	POPTR_0003s21620	POPTR_0003s21620 (11)//POPTR_0003s21640 (11)	scaffold_3:19709921-19710206(-) (11)//scaffold_3:19720816-19721098(+) (11)	NA	Q9LEH3	Peroxidase 15	AT5G06720.1	peroxidase 2 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	Medtr7g112100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.25548.1.S1_at	A	A1TS	POPTR_0003s21640	POPTR_0003s21640 (11)	scaffold_3:19720786-19721324(+) (11)	NA	Q9LEH3	Peroxidase 15	AT5G06720.1	peroxidase 2 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	Medtr7g112100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.25548.2.S1_x_at	A	A1TS	POPTR_0003s21620	POPTR_0003s21620 (9)	scaffold_3:19709739-19710238(-) (9)	NA	Q9LEH3	Peroxidase 15	AT5G06720.1	peroxidase 2 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	Medtr7g112100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.25551.1.A1_a_at	A	A1TS	POPTR_0019s11560	POPTR_0019s11560 (11)	scaffold_19:12830257-12830586(-) (11)	NA	Q39231	Sucrose transport protein SUC2	AT1G22710.1	sucrose-proton symporter 2 	LOC_Os12g44380.1	"sucrose transporter, putativ, expressed"	Medtr8g146560.1	"General substrate transporter; Sucrose/H+ symporter, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25553.1.A1_at	A	A1TS	POPTR_0005s25110	POPTR_0005s25110 (11)	scaffold_5:23439814-23440442(-) (11)	NA	P51110	Dihydroflavonol-4-reductase	AT5G42800.1	dihydroflavonol 4-reductase 	LOC_Os01g44260.1	"dihydroflavonol-4-reductase, putative, expressed"	AC235668_6.1	"Dihydroflavonol-4-reductase, putative AC235668.1 19155-23405 E EGN_Mt090430 200"	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.25553.2.S1_at	A	A1MS	POPTR_0005s25100	POPTR_0005s25100 (11)	scaffold_5:23437986-23438404(-) (11)	NA	Q43814	"Ornithine carbamoyltransferase, chloroplastic"	AT1G75330.1	ornithine carbamoyltransferase 	LOC_Os02g47590.1	"ornithine carbamoyltransferase, putative, expressed"	Medtr5g101000.1	Aspartate carbamoyltransferase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016743|carboxyl- or carbamoyltransferase activity	NA
PtpAffx.25555.1.A1_at	A	A1TS	POPTR_0011s15590	POPTR_0011s15590 (11)	scaffold_11:17676860-17677430(+) (11)	NA	NA	NA	AT1G32790.1	CTC-interacting domain 11 	LOC_Os08g02330.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122880.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.25566.1.S1_at	A	A1TS	POPTR_0015s07680	POPTR_0015s07680 (11)	scaffold_15:8981668-8983462(+) (11)	NA	Q3SW78	Protein grpE	AT4G26780.1	Co-chaperone GrpE family protein 	LOC_Os08g25090.1	"co-chaperone GrpE protein, putative, expressed"	Medtr5g101180.1	"GrpE protein, head "	GO:0006457|protein folding||GO:0030150|protein import into mitochondrial matrix||GO:0044260|cellular macromolecule metabolic process	GO:0000774|adenyl-nucleotide exchange factor activity||GO:0051087|chaperone binding||GO:0042803|protein homodimerization activity	GO:0005739|mitochondrion
PtpAffx.25566.2.S1_at	A	A1TS	POPTR_0011s09130	POPTR_0011s09130 (11)	scaffold_11:11290245-11292175(-) (11)	NA	Q6G563	Protein grpE	AT5G55200.1	Co-chaperone GrpE family protein 	LOC_Os08g25090.1	"co-chaperone GrpE protein, putative, expressed"	Medtr5g101180.1	"GrpE protein, head "	GO:0006457|protein folding||GO:0030150|protein import into mitochondrial matrix||GO:0044260|cellular macromolecule metabolic process	GO:0000774|adenyl-nucleotide exchange factor activity||GO:0051087|chaperone binding||GO:0042803|protein homodimerization activity	GO:0005739|mitochondrion
PtpAffx.25566.3.S1_at	A	A1MS	POPTR_0011s09130	POPTR_0011s09130 (9)	scaffold_11:11292533-11293883(-) (10)	NA	Q6G563	Protein grpE	AT5G55200.1	Co-chaperone GrpE family protein 	LOC_Os08g25090.1	"co-chaperone GrpE protein, putative, expressed"	Medtr5g101180.1	"GrpE protein, head "	GO:0006457|protein folding||GO:0030150|protein import into mitochondrial matrix||GO:0044260|cellular macromolecule metabolic process	GO:0000774|adenyl-nucleotide exchange factor activity||GO:0051087|chaperone binding||GO:0042803|protein homodimerization activity	GO:0005739|mitochondrion
PtpAffx.2559.2.A1_a_at	A	A2TS	POPTR_0003s21450	POPTR_0003s21450 (11)//POPTR_0003s21460 (11)	scaffold_3:19614021-19614136(+) (11)//scaffold_3:19618375-19618490(+) (11)	NA	P13240	Disease resistance response protein 206	AT1G58170.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os12g07580.1	"dirigent, putative, expressed"	Medtr7g076490.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2559.2.A1_at	A	A1TS	POPTR_0003s21460	POPTR_0003s21460 (11)	scaffold_3:19618135-19618665(+) (11)	NA	P13240	Disease resistance response protein 206	AT1G55210.2	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os12g07580.1	"dirigent, putative, expressed"	Medtr7g076490.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2559.3.A1_a_at	A	A1TS	POPTR_0003s21450	POPTR_0003s21450 (11)	scaffold_3:19613696-19614346(+) (11)	NA	P13240	Disease resistance response protein 206	AT1G58170.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os12g07580.1	"dirigent, putative, expressed"	Medtr7g076490.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.256.1.S1_at	A	A1TS	POPTR_0008s13780	POPTR_0008s13780 (11)	scaffold_8:9090194-9090446(+) (11)	NA	Q38909	Probable xyloglucan endotransglucosylase/hydrolase protein 28	AT1G14720.1	xyloglucan endotransglucosylase/hydrolase 28 	LOC_Os03g13570.1	"glycosyl hydrolases family 16, putative, expressed"	CU633465_9.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal CU633465.7 82577-85450 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.256.2.S1_at	A	A1TS	POPTR_0005s23020	POPTR_0005s23020 (9)	scaffold_5:21869499-21870054(+) (9)	NA	Q9FT81	Transcription factor TT8	AT4G09820.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os11g15210.1	"anthocyanin regulatory Lc protein, putative"	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.256.3.S1_a_at	A	A2TS	POPTR_0008s13780	POPTR_0008s13780 (11)//POPTR_0010s11280 (11)	scaffold_10:11585014-11585735(-) (11)//scaffold_8:9088415-9089139(+) (11)	NA	Q38909	Probable xyloglucan endotransglucosylase/hydrolase protein 28	AT1G14720.1	xyloglucan endotransglucosylase/hydrolase 28 	LOC_Os03g13570.1	"glycosyl hydrolases family 16, putative, expressed"	CU633465_9.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal CU633465.7 82577-85450 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.256.3.S1_at	A	A1TS	POPTR_0010s11280	POPTR_0010s11280 (11)	scaffold_10:11585722-11586202(-) (11)	NA	Q38909	Probable xyloglucan endotransglucosylase/hydrolase protein 28	AT1G14720.1	xyloglucan endotransglucosylase/hydrolase 28 	LOC_Os03g13570.1	"glycosyl hydrolases family 16, putative, expressed"	CU633465_9.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal CU633465.7 82577-85450 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.256.4.A1_a_at	A	A3TS	POPTR_0016s04860	POPTR_0016s04860 (11)//POPTR_0453s00210 (11)//POPTR_0016s04870 (11)	scaffold_16:2928110-2934326(+) (11)//scaffold_16:2934233-2938987(+) (11)//scaffold_453:3805-4100(-) (11)	NA	NA	NA	AT5G06810.1	Mitochondrial transcription termination factor family protein 	LOC_Os08g40630.2	"mTERF domain containing protein, expressed"	Medtr7g111650.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2562.1.A1_at	A	A1TS	POPTR_0014s15110	POPTR_0014s15110 (9)	scaffold_14:11145929-11146259(-) (9)//scaffold_14:11218075-11218360(-) (10)	NA	Q8H1Z0	Protein WAX2	AT1G02205.2	Fatty acid hydroxylase superfamily 	LOC_Os10g33250.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.2562.2.S1_s_at	A	A1TS	POPTR_0014s17850	POPTR_0014s17850 (11)	scaffold_14:14326440-14327216(+) (11)	NA	Q8H1Z0	Protein WAX2	AT1G02205.3	Fatty acid hydroxylase superfamily 	LOC_Os10g33250.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.25622.1.S1_at	A	A1TS	POPTR_0016s00580	POPTR_0016s00580 (11)	scaffold_16:202558-203438(+) (11)	NA	Q00472	4-nitrophenylphosphatase	AT5G47760.1	2-phosphoglycolate phosphatase 2 	LOC_Os09g08660.1	"4-nitrophenylphosphatase, putative, expressed"	Medtr2g032900.1	"HAD-superfamily hydrolase, subfamily IIA "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.25624.1.A1_s_at	A	A1TS	POPTR_0005s21870	POPTR_0005s21870 (11)	scaffold_5:20920438-20920691(-) (11)	NA	Q9SQI2	Protein GIGANTEA	AT1G22770.1	gigantea protein (GI) 	LOC_Os01g08700.6	"GIGANTEA, putative, expressed"	Medtr1g124650.2	"Protein GIGANTEA, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25624.2.S1_s_at	A	A2TS	POPTR_0002s06490	POPTR_0002s06490 (11)//POPTR_0005s21870 (11)	scaffold_2:4339471-4339535(+) (11)//scaffold_5:20923505-20923569(-) (11)	NA	Q9SQI2	Protein GIGANTEA	AT1G22770.1	gigantea protein (GI) 	LOC_Os01g08700.6	"GIGANTEA, putative, expressed"	Medtr1g124650.2	"Protein GIGANTEA, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25630.1.A1_at	A	A1TS	POPTR_0006s08170	POPTR_0006s08170 (10)	scaffold_6:5934854-5935756(-) (10)	NA	Q93ZD7	Magnesium transporter MRS2-4	AT3G58970.1	magnesium transporter 6 	LOC_Os10g39790.2	"CorA-like magnesium transporter protein, putative, expressed"	Medtr4g137240.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25638.1.S1_a_at	A	A2TS	POPTR_0001s34140	POPTR_0017s09960 (11)//POPTR_0001s34140 (11)	scaffold_1:32272897-32273221(+) (11)//scaffold_17:8754681-8755011(-) (11)	NA	NA	NA	AT4G17310.1	"unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr8g105630.1	"transcription factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25638.1.S1_at	A	A1TS	POPTR_0001s34140	POPTR_0001s34140 (11)	scaffold_1:32272855-32275117(+) (11)	NA	NA	NA	AT4G17310.1	"unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr8g105630.1	"transcription factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25641.1.A1_at	A	A1TS	POPTR_0001s20640	POPTR_0001s20640 (11)	scaffold_1:18642423-18642988(+) (11)	NA	P54697	Myosin-J heavy chain	AT5G20490.1	Myosin family protein with Dil domain 	LOC_Os03g48140.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.25648.2.A1_s_at	A	A1TS	POPTR_0002s20340	POPTR_0002s20340 (11)	scaffold_2:16367900-16369033(+) (11)	NA	O24301	Sucrose synthase 2	AT4G02280.1	sucrose synthase 3 	LOC_Os03g22120.1	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.25650.1.S1_a_at	A	A1TS	POPTR_0009s14090	POPTR_0009s14090 (9)	scaffold_9:11113162-11113230(+) (9)	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16990.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25650.1.S1_at	A	A1MS	POPTR_0009s14090	POPTR_0009s14090 (9)	scaffold_9:11112660-11113358(+) (9)	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16990.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25650.3.S1_a_at	A	A1TS	POPTR_0009s14090	POPTR_0009s14090 (11)	scaffold_9:11110814-11110858(+) (11)	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16990.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25650.3.S1_at	A	A1MS	POPTR_0009s14090	POPTR_0009s14090 (11)	scaffold_9:11110632-11110986(+) (11)	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16990.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25673.1.S1_at	A	A1TS	POPTR_0013s01200	POPTR_0013s01200 (11)	scaffold_13:658083-658478(+) (11)	NA	NA	NA	AT4G25800.2	Calmodulin-binding protein 	LOC_Os02g08120.1	"calmodulin binding protein, putative, expressed"	Medtr4g125280.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2568.1.S1_at	A	A1TS	POPTR_0005s17790	POPTR_0005s17790 (9)	scaffold_5:15540248-15540724(-) (10)	NA	Q54PY7	Probable mitochondrial 2-oxoglutarate/malate carrier protein	AT4G24570.1	dicarboxylate carrier 2 	LOC_Os08g37370.2	"mitochondrial carrier protein, putative, expressed"	Medtr5g033920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25683.1.S1_at	A	A1TS	POPTR_0003s07090	POPTR_0003s07090 (11)	scaffold_3:8689755-8690222(-) (11)	NA	Q9XF63	RING-H2 finger protein ATL3	AT1G72310.1	RING/U-box superfamily protein 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25696.1.S1_at	A	A1TS	POPTR_0024s00450	POPTR_0024s00450 (11)	scaffold_24:208294-208761(+) (11)	NA	Q53HY2	Ninja-family protein mc410	AT4G28910.3	novel interactor of JAZ 	LOC_Os05g48500.3	expressed protein	Medtr6g098770.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25697.1.S1_at	A	A1TS	POPTR_0001s01630	POPTR_0001s01630 (11)	scaffold_1:1215562-1215943(-) (11)	NA	P26302	"Phosphoribulokinase, chloroplastic"	AT1G32060.1	phosphoribulokinase 	LOC_Os02g47020.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr5g027690.1	Phosphoribulokinase/uridine kinase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.2571.1.A1_at	A	A1TS	POPTR_0012s03620	POPTR_0012s03620 (11)	scaffold_12:2844293-2845140(-) (11)	NA	Q9XGX9	Mitochondrial import inner membrane translocase subunit Tim9	AT3G46560.1	Tim10/DDP family zinc finger protein 	LOC_Os12g38310.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr4g019510.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
PtpAffx.25712.1.S1_at	A	A1TS	POPTR_0008s08800	POPTR_0008s08800 (10)	scaffold_8:5464720-5464834(-) (10)	NA	Q562C4	Methyltransferase-like protein 7B	AT1G69523.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51030.1	"methyltransferase domain containing protein, putative, expressed"	Medtr5g044980.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.25712.1.S1_s_at	A	A1TS	POPTR_0008s08800	POPTR_0008s08800 (11)	scaffold_8:5463853-5464647(-) (11)	NA	Q562C4	Methyltransferase-like protein 7B	AT1G69523.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51030.1	"methyltransferase domain containing protein, putative, expressed"	Medtr5g044980.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.258.1.A1_at	A	A1TS	POPTR_0001s34220	POPTR_0001s34220 (11)	scaffold_1:32350856-32351197(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.258.2.S1_at	A	A1TS	POPTR_0017s10140	POPTR_0017s10140 (11)	scaffold_17:9374587-9374717(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.258.2.S1_x_at	A	A1TS	POPTR_0017s10140	POPTR_0017s10140 (11)	scaffold_17:9373568-9374713(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.258.3.A1_a_at	A	A1TS	POPTR_0018s12930	POPTR_0018s12930 (11)	scaffold_18:13408354-13408489(-) (11)	NA	Q07488	Blue copper protein	AT2G32300.1	uclacyanin 1 	LOC_Os08g04340.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.25816.1.S1_at	A	A1TS	POPTR_0004s05750	POPTR_0004s05750 (11)	scaffold_4:4506565-4507200(+) (11)	NA	Q94C70	Nucleobase-ascorbate transporter 2	AT2G34190.1	Xanthine/uracil permease family protein 	LOC_Os01g55500.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr4g134900.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.25818.1.S1_at	A	A1TS	POPTR_0004s04060	POPTR_0004s04060 (11)	scaffold_4:2918672-2919050(+) (11)	NA	A8WX89	UPF0533 protein CBG04321	AT2G47960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378); Has 285 Blast hits to 284 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 68; Plants - 32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). 	LOC_Os10g35570.1	expressed protein	AC233659_17.1	"UPF0533 protein, related AC233659.1 71731-77893 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25830.1.A1_at	A	A1TS	POPTR_0009s03850	POPTR_0009s03850 (11)	scaffold_9:4428285-4428734(+) (11)	NA	Q9XE58	Scarecrow-like protein 14	AT1G07530.1	SCARECROW-like 14 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g084540.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25832.1.S1_at	A	A1TS	POPTR_0006s09390	POPTR_0006s09390 (11)	scaffold_6:6894987-6895234(-) (11)	NA	Q9ZUI6	AP-1 complex subunit gamma-2	AT1G60070.1	"Adaptor protein complex AP-1, gamma subunit "	LOC_Os06g07090.2	"AP-1 complex subunit gamma-1, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.25833.1.A1_at	A	A1TS	POPTR_0002s14730	POPTR_0002s14730 (11)	scaffold_2:10939655-10939944(+) (11)	NA	Q43848	"Transketolase, chloroplastic"	AT2G45290.1	Transketolase 	LOC_Os06g04270.1	"transketolase, chloroplast precursor, putative, expressed"	Medtr2g132820.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.25862.1.S1_at	A	A1TS	POPTR_0005s24540	POPTR_0005s24540 (11)	scaffold_5:23064093-23064367(+) (11)	NA	Q91W34	UPF0420 protein C16orf58 homolog	AT2G31190.2	"Protein of unknown function, DUF647 "	LOC_Os04g43690.1	"DUF647 domain containing protein, putative, expressed"	Medtr4g106950.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25868.1.S1_at	A	A1TS	POPTR_0016s03020	POPTR_0016s03020 (11)	scaffold_16:1522044-1522871(+) (11)	NA	P58742	Aladin	AT3G56900.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g03540.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g105370.1	"Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2587.1.A1_at	A	A1TS	POPTR_0003s11830	POPTR_0003s11830 (11)	scaffold_3:12581192-12581970(-) (11)	NA	O14618	Copper chaperone for superoxide dismutase	AT1G12520.1	copper chaperone for SOD1 	LOC_Os04g48410.1	"copper chaperone for superoxide dismutase, putative, expressed"	Medtr8g106410.1	"Superoxide dismutase, copper/zinc binding; Heavy metal transport/detoxification protein "	GO:0030001|metal ion transport||GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
PtpAffx.25872.1.S1_at	A	A1MS	POPTR_0002s13690	POPTR_0002s13690 (9)	scaffold_2:10153524-10154043(+) (9)	NA	NA	NA	AT1G02180.1	ferredoxin-related 	LOC_Os02g58740.1	expressed protein	Medtr8g009050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2589.1.A1_s_at	A	A1TS	POPTR_0014s02550	POPTR_0014s02550 (11)	scaffold_14:2135980-2136454(+) (11)	NA	P42731	Polyadenylate-binding protein 2	AT4G34110.1	poly(A) binding protein 2 	LOC_Os04g42600.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
PtpAffx.2589.2.S1_at	A	A1TS	POPTR_0002s12570	POPTR_0002s12570 (11)	scaffold_2:9363144-9363647(+) (11)	NA	P42731	Polyadenylate-binding protein 2	AT1G49760.2	poly(A) binding protein 8 	LOC_Os08g22354.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
PtpAffx.25920.1.S1_a_at	A	A2TS	POPTR_0005s10370	POPTR_1031s00220 (11)//POPTR_0005s10370 (11)	scaffold_1031:1529-7382(+) (11)//scaffold_1031:7079-7436(+) (10)//scaffold_5:7441570-7441927(-) (11)	POPTR_1031s00200 (7)	NA	NA	NA	NA	LOC_Os01g65700.1	expressed protein	Medtr8g088180.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25938.1.S1_a_at	A	A1TS	POPTR_0014s12470	POPTR_0014s12470 (11)	scaffold_14:9183053-9183265(-) (11)	NA	NA	NA	AT2G47710.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os12g36640.2	"universal stress protein domain containing protein, putative, expressed"	Medtr1g108490.2	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
PtpAffx.25938.2.S1_a_at	A	A1TS	POPTR_0014s12470	POPTR_0014s12470 (11)	scaffold_14:9183687-9184206(-) (11)	NA	NA	NA	AT2G47710.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os12g36640.2	"universal stress protein domain containing protein, putative, expressed"	Medtr1g108490.2	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
PtpAffx.25940.1.S1_at	A	A1TS	POPTR_0008s20960	POPTR_0008s20960 (11)	scaffold_8:15013385-15014627(+) (11)	NA	B9RT04	UPF0497 membrane protein 12	AT4G15630.1	Uncharacterised protein family (UPF0497) 	LOC_Os01g26120.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g139630.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25940.1.S1_s_at	A	A1TS	POPTR_0008s20960	POPTR_0008s20960 (11)	scaffold_8:15013303-15014597(+) (11)	NA	B9RT04	UPF0497 membrane protein 12	AT4G15630.1	Uncharacterised protein family (UPF0497) 	LOC_Os01g26120.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g139630.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25946.1.S1_at	A	A1TS	POPTR_0002s09760	POPTR_0002s09760 (10)	scaffold_2:7003622-7003789(+) (10)	NA	Q1LZ86	Monoacylglycerol lipase ABHD6	AT1G78210.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g42994.1	"hydrolase, putative, expressed"	Medtr5g072880.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25946.2.A1_at	A	A1TS	POPTR_0012s03930	POPTR_0012s03930 (11)	scaffold_12:3156999-3157522(-) (11)	NA	NA	NA	AT1G48450.1	Protein of unknown function (DUF760) 	LOC_Os03g50870.1	expressed protein	Medtr4g154570.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25959.1.S1_at	A	A1TS	POPTR_0010s09580	POPTR_0010s09580 (11)	scaffold_10:10337793-10338111(+) (11)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25964.1.S1_s_at	A	A1TS	POPTR_0018s11820	POPTR_0018s11820 (11)	scaffold_18:12487063-12487750(-) (11)	NA	P93338	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	AT2G24270.3	aldehyde dehydrogenase 11A3 	LOC_Os08g34210.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g145740.1	"NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.25964.2.S1_at	A	A1MS	POPTR_0018s11820	POPTR_0018s11820 (11)	scaffold_18:12487431-12487572(-) (11)	NA	P93338	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	AT2G24270.3	aldehyde dehydrogenase 11A3 	LOC_Os08g34210.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g145740.1	"NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.25966.1.S1_s_at	A	A2TS	POPTR_0008s14310	POPTR_0010s10860 (11)//POPTR_0008s14310 (11)	scaffold_10:11260967-11261049(-) (11)//scaffold_8:9485997-9486079(+) (11)	NA	Q9C5U3	26S protease regulatory subunit 8 homolog A	AT5G19990.1	regulatory particle triple-A ATPase 6A 	LOC_Os02g11050.1	"26S protease regulatory subunit, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.2597.1.S1_at	A	A1TS	POPTR_0001s19220	POPTR_0001s19220 (11)	scaffold_1:16718101-16718563(+) (11)	NA	Q9LU14	GDSL esterase/lipase APG	AT3G16370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os06g05550.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g016480.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.25978.1.A1_at	A	A1MS	POPTR_0019s05800	POPTR_0019s05800 (9)	scaffold_19:6210267-6212591(-) (10)	NA	Q21CI1	Chaperone protein dnaJ	AT5G16650.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g46640.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g074940.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.25979.1.S1_at	A	A1TS	POPTR_0005s26280	POPTR_0005s26280 (11)	scaffold_5:24352487-24353550(+) (11)	NA	Q9ZRZ8	DEAD-box ATP-dependent RNA helicase 28	AT4G16630.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os12g29660.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g067120.1	"Helicase, C-terminal "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.25979.2.S1_at	A	A1TS	POPTR_0019s11490	POPTR_0019s11490 (11)	scaffold_19:12758079-12759397(+) (11)	NA	Q9JKX4	Protein AATF	AT5G61330.1	rRNA processing protein-related 	LOC_Os01g34200.1	"AATF, putative, expressed"	Medtr5g074020.1	TRAUB 	NA	NA	GO:0005634|nucleus
PtpAffx.25979.3.S1_at	A	A1TA	POPTR_0019s11490	POPTR_0019s11490 (10)	scaffold_19:12755588-12755902(-) (10)	NA	Q9JKX4	Protein AATF	AT5G61330.1	rRNA processing protein-related 	LOC_Os01g34200.1	"AATF, putative, expressed"	Medtr5g074020.1	TRAUB 	NA	NA	GO:0005634|nucleus
PtpAffx.2598.1.S1_at	A	A1TS	POPTR_0002s09570	POPTR_0002s09570 (9)	scaffold_2:6857913-6859388(-) (9)	NA	Q8LBV4	"Uncharacterized methyltransferase At1g78140, chloroplastic"	AT1G78140.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g31750.1	"methyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.25980.1.S1_at	A	A1TS	POPTR_0012s01280	POPTR_0012s01280 (11)	scaffold_12:912999-913514(-) (11)	NA	P52838	Flavonol sulfotransferase-like	AT1G74100.1	sulfotransferase 16 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr8g077540.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.2599.1.S1_at	A	A1TS	POPTR_0010s09480	POPTR_0010s09480 (9)	scaffold_10:10293378-10293854(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.260.1.A1_s_at	A	A1TS	POPTR_0001s46870	POPTR_0001s46870 (11)	scaffold_1:47243319-47243725(+) (11)	NA	P18025	Tubulin beta-1 chain	AT5G62700.1	tubulin beta chain 3 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.26004.1.S1_at	A	A1TS	POPTR_0002s01110	POPTR_0002s01110 (11)	scaffold_2:600593-601006(+) (11)	NA	Q5R7B8	Kelch-like protein 20	AT2G30600.4	BTB/POZ domain-containing protein 	LOC_Os05g27880.2	"BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed"	Medtr5g075660.1	BTB/POZ; Galactose-binding like; ; 	GO:0007155|cell adhesion	GO:0005515|protein binding	NA
PtpAffx.2601.1.S1_at	A	A1TS	POPTR_0014s17700	POPTR_0014s17700 (10)	scaffold_14:13951921-13952438(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009790|embryonic development	NA	NA
PtpAffx.26013.1.S1_at	A	A1TS	POPTR_0014s10480	POPTR_0014s10480 (11)	scaffold_14:7820769-7821218(-) (11)	NA	O74507	Uncharacterized protein C594.04c	AT2G46890.1	Protein of unknown function (DUF1295) 	LOC_Os04g01510.1	"DUF1295 domain containing protein, putative, expressed"	AC233662_23.1	Protein of unknown function DUF1295 AC233662.1 105748-108755 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26053.1.A1_s_at	A	A1TS	POPTR_0001s26000	POPTR_0001s26000 (11)	scaffold_1:25099945-25101113(-) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT1G34470.1	Protein of unknown function (DUF803) 	LOC_Os05g43790.1	"DUF803 domain containing, putative, expressed"	Medtr5g097050.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.26070.1.S1_at	A	A1MS	POPTR_0017s03590	POPTR_0017s03590 (11)	scaffold_17:2608882-2609295(+) (11)	POPTR_0018s14960 (8)	Q8RXN0	ABC transporter G family member 11	AT1G17840.1	white-brown complex homolog protein 11 	LOC_Os10g35180.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g104580.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.26075.1.S1_s_at	A	A1TS	POPTR_0006s10290	POPTR_0006s10290 (11)	scaffold_6:7692110-7692597(-) (11)	NA	O80452	AMP deaminase	AT2G38280.2	"AMP deaminase, putative / myoadenylate deaminase, putative "	LOC_Os07g49270.2	"AMP deaminase, putative, expressed"	AC233100_67.1	AMP deaminase AC233100.6 286316-296871 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
PtpAffx.26085.1.S1_a_at	A	A1TS	POPTR_0013s02220	POPTR_0013s02220 (11)	scaffold_13:1331518-1331899(+) (11)	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.2	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.2609.1.A1_at	A	A1TS	POPTR_0012s06310	POPTR_0012s06310 (11)	scaffold_12:6640452-6642267(-) (11)	POPTR_0014s15180 (6)	P42744	NEDD8-activating enzyme E1 regulatory subunit	AT1G05180.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g60550.3	"ThiF family domain containing protein, putative, expressed"	Medtr4g062400.1	UBA/THIF-type NAD/FAD binding fold 	NA	GO:0003824|catalytic activity	NA
PtpAffx.261.1.S1_at	A	A1TS	POPTR_0006s18760	POPTR_0006s18760 (11)	scaffold_6:17380565-17380879(+) (11)	NA	Q9FHH8	Zinc finger protein CONSTANS-LIKE 5	AT5G57660.1	CONSTANS-like 5 	LOC_Os06g44450.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr8g128200.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.261.2.A1_at	A	A1TS	POPTR_0018s10510	POPTR_0018s10510 (11)	scaffold_18:11432474-11432799(+) (11)	NA	Q9FHH8	Zinc finger protein CONSTANS-LIKE 5	AT5G57660.1	CONSTANS-like 5 	LOC_Os06g44450.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr8g128200.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.26104.2.S1_s_at	A	A1TS	POPTR_0006s17970	POPTR_0006s17970 (11)	scaffold_6:16278848-16279127(-) (11)	NA	Q9ZPI1	Lysyl-tRNA synthetase	AT3G11710.1	lysyl-tRNA synthetase 1 	LOC_Os03g38980.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr2g041510.2	"Aspartyl-tRNA synthetase, class IIb; nucleic acid binding, OB-fold, tRNA/helicase-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.26104.3.S1_a_at	A	A2TS	POPTR_0018s09760	POPTR_0018s09760 (11)//POPTR_0018s09780 (11)	scaffold_18:10819372-10819572(-) (11)//scaffold_18:10845344-10845544(-) (11)	NA	Q9ZPI1	Lysyl-tRNA synthetase	AT3G11710.1	lysyl-tRNA synthetase 1 	LOC_Os03g38980.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr2g041510.2	"Aspartyl-tRNA synthetase, class IIb; nucleic acid binding, OB-fold, tRNA/helicase-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.26104.3.S1_at	A	A1TS	POPTR_0018s09760	POPTR_0018s09760 (11)	scaffold_18:10818667-10819843(-) (11)	POPTR_0018s09780 (8)	Q9ZPI1	Lysyl-tRNA synthetase	AT3G11710.1	lysyl-tRNA synthetase 1 	LOC_Os03g38980.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr2g041510.2	"Aspartyl-tRNA synthetase, class IIb; nucleic acid binding, OB-fold, tRNA/helicase-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.26121.1.S1_at	A	A1TS	POPTR_0005s15270	POPTR_0005s15270 (11)	scaffold_5:12024354-12025041(+) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT5G38210.1	Protein kinase family protein 	LOC_Os01g49529.1	"OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.26153.1.S1_s_at	A	A1TS	POPTR_0013s02980	POPTR_0013s02980 (11)	scaffold_13:1803119-1803232(-) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G27320.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g098780.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.26156.1.A1_at	A	A1TS	POPTR_0005s12550	POPTR_0005s12550 (11)	scaffold_5:9318833-9321885(-) (11)	NA	O64989	Cytochrome P450 90B1	AT3G50660.1	Cytochrome P450 superfamily protein 	LOC_Os03g12660.1	"cytochrome P450, putative, expressed"	Medtr5g019910.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.26161.1.S1_at	A	A1TS	POPTR_0014s02000	POPTR_0014s02000 (9)	scaffold_14:1770408-1770642(-) (9)	NA	NA	NA	AT3G19540.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26161.2.A1_a_at	A	A1TS	POPTR_0014s02000	POPTR_0014s02000 (11)	scaffold_14:1770660-1771107(-) (11)	NA	NA	NA	AT3G19540.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26204.1.S1_at	A	A1TS	POPTR_0018s09420	POPTR_0018s09420 (11)	scaffold_18:10312150-10312828(-) (11)	NA	Q9LHK4	Putative ABC transporter B family member 8	AT3G28345.1	ABC transporter family protein 	LOC_Os01g52550.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.26214.1.A1_a_at	A	A1TS	POPTR_0004s04570	POPTR_0004s04570 (11)	scaffold_4:3306010-3306086(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26214.2.A1_at	A	A1TS	POPTR_0004s04570	POPTR_0004s04570 (9)	scaffold_4:3301790-3306124(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26219.1.S1_a_at	A	A1TS	POPTR_0017s01350	POPTR_0017s01350 (11)	scaffold_17:936416-936491(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26219.1.S1_at	A	A1TS	POPTR_0017s01350	POPTR_0017s01350 (9)	scaffold_17:936488-936756(-) (9)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26219.2.A1_at	A	A1TS	POPTR_0017s01350	POPTR_0017s01350 (10)	scaffold_17:936171-936401(-) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26220.1.A1_at	A	A1TS	POPTR_0011s07810	POPTR_0011s07810 (11)	scaffold_11:8705990-8706502(-) (11)	NA	Q5ZMW3	Apoptosis inhibitor 5	AT2G34040.1	Apoptosis inhibitory protein 5 (API5) 	LOC_Os02g20930.1	"apoptosis inhibitor 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26227.1.S1_s_at	A	A1TS	POPTR_0030s00400	POPTR_0030s00400 (11)	scaffold_30:166432-166898(+) (11)	NA	Q9FQ04	5'-3' exoribonuclease 4	AT1G54490.1	exoribonuclease 4 	LOC_Os03g58060.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr7g140440.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.26228.1.S1_at	A	A1TS	POPTR_0002s04430	POPTR_0002s04430 (10)	scaffold_2:2778074-2778611(+) (10)	NA	Q9FE67	Ethylene-responsive transcription factor 9	AT5G44210.1	erf domain protein 9 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr2g017810.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.26237.1.S1_at	A	A1TS	POPTR_0014s08350	POPTR_0014s08350 (10)	scaffold_14:6213327-6214168(+) (10)	NA	NA	NA	AT4G23470.1	PLAC8 family protein 	LOC_Os03g03180.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26249.1.S1_at	A	A1TS	POPTR_0019s05470	POPTR_0019s05470 (11)	scaffold_19:5831037-5833100(-) (11)//scaffold_502:11916-13963(+) (10)	POPTR_0502s00200 (7)	Q6ID70	Uncharacterized protein At3g03773	AT3G03773.1	HSP20-like chaperones superfamily protein 	LOC_Os03g45270.1	"CS domain containing protein, putative, expressed"	Medtr1g108550.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2625.2.S1_a_at	A	A1TS	POPTR_0007s00550	POPTR_0007s00550 (11)	scaffold_7:221379-221695(+) (11)	NA	Q39172	Probable NADP-dependent oxidoreductase P1	AT1G26320.1	Zinc-binding dehydrogenase family protein 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.2625.3.A1_a_at	A	A3TS	POPTR_0017s03680	POPTR_0017s03860 (11)//POPTR_0017s03680 (11)//POPTR_0017s03890 (10)	scaffold_17:2728658-2729037(+) (11)//scaffold_17:2787948-2788297(+) (10)//scaffold_17:2799240-2799620(+) (11)//scaffold_17:2868187-2868566(+) (11)//scaffold_17:2899849-2900198(+) (10)	POPTR_0017s03780 (6)//POPTR_0017s03750 (6)	Q39172	Probable NADP-dependent oxidoreductase P1	AT5G37980.1	Zinc-binding dehydrogenase family protein 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.26268.1.S1_s_at	A	A1TS	POPTR_0009s16080	POPTR_0009s16080 (11)	scaffold_9:12307692-12308115(-) (11)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20780.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.26270.1.S1_at	A	A1TS	POPTR_0005s07140	POPTR_0005s07140 (9)	scaffold_5:4789451-4791110(-) (9)	NA	Q9MA92	Filament-like plant protein 3	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os07g32340.3	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26280.1.A1_a_at	A	A1TS	POPTR_0001s13890	POPTR_0001s13890 (11)	scaffold_1:10946320-10946576(-) (11)	NA	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.26280.2.A1_at	A	A1MS	POPTR_0001s13890	POPTR_0001s13890 (11)	scaffold_1:10946588-10946773(-) (11)	NA	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.26288.1.S1_at	A	A1TS	POPTR_0009s11620	POPTR_0009s11620 (11)	scaffold_9:9612959-9613377(-) (11)	NA	NA	NA	AT1G19360.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os07g39840.1	expressed protein	Medtr5g025630.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26289.1.A1_at	A	A1TS	POPTR_0001s29210	POPTR_0001s29210 (11)	scaffold_1:27952126-27952662(+) (11)	NA	Q01899	"Heat shock 70 kDa protein, mitochondrial"	AT5G09590.1	mitochondrial HSO70 2 	LOC_Os02g53420.1	"DnaK family protein, putative, expressed"	Medtr2g010100.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26289.2.S1_s_at	A	A1TS	POPTR_0009s08320	POPTR_0009s08320 (11)	scaffold_9:7653498-7653818(+) (11)	NA	Q01899	"Heat shock 70 kDa protein, mitochondrial"	AT5G09590.1	mitochondrial HSO70 2 	LOC_Os02g53420.1	"DnaK family protein, putative, expressed"	Medtr2g010100.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.263.1.S1_at	A	A1TS	POPTR_0003s19570	POPTR_0003s19570 (11)	scaffold_3:18267862-18269104(+) (11)	NA	O34355	Putative amidohydrolase ytcJ	AT3G55850.1	Amidohydrolase family 	LOC_Os01g72350.1	"amidohydrolase, putative, expressed"	Medtr3g006310.1	"Metallo-dependent hydrolase, composite "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26302.1.A1_at	A	A1MA	POPTR_0001s47270	POPTR_0001s47270 (9)	scaffold_1:47524263-47524829(-) (9)	NA	Q6YCH2	TD and POZ domain-containing protein 4	AT1G55760.1	BTB/POZ domain-containing protein 	LOC_Os08g38700.1	"C3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed"	Medtr3g080350.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.26302.2.S1_at	A	A1TS	POPTR_0001s47270	POPTR_0001s47270 (11)	scaffold_1:47524576-47525038(+) (11)	NA	Q6YCH2	TD and POZ domain-containing protein 4	AT1G55760.1	BTB/POZ domain-containing protein 	LOC_Os08g38700.1	"C3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed"	Medtr3g080350.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.2631.1.S1_at	A	A1TS	POPTR_0012s05900	POPTR_0012s05900 (9)	scaffold_12:5790478-5790704(+) (9)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	Medtr1g083510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26316.1.S1_at	A	A1TS	POPTR_0008s14930	POPTR_0008s14930 (9)	scaffold_8:9951040-9951460(+) (9)	NA	P22082	Transcription regulatory protein SNF2	AT3G06010.1	Homeotic gene regulator 	LOC_Os05g05230.1	expressed protein	Medtr1g133020.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.26319.1.S1_at	A	A1TS	POPTR_0002s21310	POPTR_0002s21310 (9)	scaffold_2:17735369-17735779(-) (9)	NA	P73714	Putative zinc metalloprotease slr1821	AT2G32480.1	ARABIDOPSIS SERIN PROTEASE 	LOC_Os03g38230.1	"peptidase M50 family protein, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0005515|protein binding	NA
PtpAffx.26319.2.A1_a_at	A	A2TS	POPTR_0002s21310	POPTR_0002s21310 (11)//POPTR_0014s15230 (10)	scaffold_14:11315246-11315704(-) (11)//scaffold_2:17735409-17735865(-) (11)	NA	P73714	Putative zinc metalloprotease slr1821	AT2G32480.1	ARABIDOPSIS SERIN PROTEASE 	LOC_Os03g38230.1	"peptidase M50 family protein, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0005515|protein binding	NA
PtpAffx.26319.2.A1_at	A	A1TS	POPTR_0014s15230	POPTR_0014s15230 (9)	scaffold_14:11315288-11315766(-) (10)	NA	P73714	Putative zinc metalloprotease slr1821	AT2G32480.1	ARABIDOPSIS SERIN PROTEASE 	LOC_Os03g38230.1	"peptidase M50 family protein, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0005515|protein binding	NA
PtpAffx.26320.1.S1_at	A	A1TS	POPTR_0006s06210	POPTR_0006s06210 (9)	scaffold_6:4422973-4423517(+) (9)	NA	O82730	"Monogalactosyldiacylglycerol synthase 2, chloroplastic"	AT5G20410.1	monogalactosyldiacylglycerol synthase 2 	LOC_Os02g55910.1	"monogalactosyldiacylglycerol synthase, putative, expressed"	Medtr8g121970.1	Monogalactosyldiacylglycerol synthase 	GO:0009247|glycolipid biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.26333.1.A1_at	A	A1TS	POPTR_0018s02070	POPTR_0018s02070 (11)	scaffold_18:1836127-1836639(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26351.1.A1_at	A	A1TS	POPTR_0018s08380	POPTR_0018s08380 (11)	scaffold_18:9336127-9337168(+) (11)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT5G21930.2	P-type ATPase of Arabidopsis 2 	LOC_Os03g08070.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.1	"ATPase, E1-E2 type "	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.26356.1.S1_at	A	A1TS	POPTR_0006s09200	POPTR_0006s09200 (11)	scaffold_6:6783906-6784259(+) (11)	NA	P93394	Uracil phosphoribosyltransferase	AT3G53900.2	uracil phosphoribosyltransferase 	LOC_Os05g38170.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.26369.1.S1_s_at	A	A1TS	POPTR_0009s06530	POPTR_0009s06530 (11)	scaffold_9:6291022-6292753(+) (11)	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26369.3.S1_s_at	A	A1TS	POPTR_0001s27290	POPTR_0001s27290 (9)	scaffold_1:26189822-26190015(+) (11)	POPTR_0001s27270 (6)//POPTR_0001s27260 (6)	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2638.1.S1_at	A	A1TS	POPTR_0009s04350	POPTR_0009s04350 (11)	scaffold_9:4766370-4766874(+) (11)	NA	NA	NA	AT5G59050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g117330.1	"IMP dehydrogenase/GMP reductase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26383.1.S1_s_at	A	A1TS	POPTR_0001s34190	POPTR_0001s34190 (11)	scaffold_1:32315084-32315378(-) (11)	NA	NA	NA	AT3G01780.1	ARM repeat superfamily protein 	LOC_Os02g55010.1	expressed protein	Medtr8g142250.1	Calcium-binding EF-hand; Heme-binding A 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26385.1.S1_at	A	A1TS	POPTR_0017s11060	POPTR_0017s11060 (9)	scaffold_17:10720594-10720959(-) (9)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT2G37440.1	DNAse I-like superfamily protein 	LOC_Os07g07950.2	"type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed"	Medtr6g009930.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26402.1.S1_at	A	A1TS	POPTR_0006s03790	POPTR_0006s03790 (11)	scaffold_6:2542990-2543444(-) (11)	NA	Q9C977	"Pentatricopeptide repeat-containing protein At1g80270, mitochondrial"	AT1G80270.3	PENTATRICOPEPTIDE REPEAT 596 	LOC_Os12g07260.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g106790.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26405.2.A1_at	A	A1TS	POPTR_0002s06880	POPTR_0002s06880 (10)	scaffold_2:4624599-4625118(-) (10)	NA	Q75HX5	Tubby-like F-box protein 8	AT1G43640.1	tubby like protein 5 	LOC_Os05g36190.1	"OsFBT7 - F-box and tubby domain containing protein, expressed"	Medtr1g125200.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26405.3.A1_at	A	A1TS	POPTR_0005s21450	POPTR_0005s21450 (11)	scaffold_5:20573618-20574119(+) (11)	NA	Q75HX5	Tubby-like F-box protein 8	AT1G43640.1	tubby like protein 5 	LOC_Os05g36190.1	"OsFBT7 - F-box and tubby domain containing protein, expressed"	Medtr1g125200.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26414.1.S1_at	A	A1TS	POPTR_0007s13190	POPTR_0007s13190 (11)	scaffold_7:13314678-13315108(-) (11)	NA	Q9FJZ3	"Mannan endo-1,4-beta-mannosidase 7"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr5g020810.1	"Glycoside hydrolase, catalytic core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26414.2.A1_a_at	A	A2TS	POPTR_0005s12250	POPTR_0005s12250 (11)//POPTR_0007s13190 (10)	scaffold_5:9036580-9036640(+) (11)//scaffold_7:13315195-13315255(-) (10)	NA	Q9FJZ3	"Mannan endo-1,4-beta-mannosidase 7"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr5g020810.1	"Glycoside hydrolase, catalytic core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26414.2.A1_at	A	A1TS	POPTR_0005s12250	POPTR_0005s12250 (11)	scaffold_5:9036628-9037129(+) (11)	NA	Q9FJZ3	"Mannan endo-1,4-beta-mannosidase 7"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr5g020810.1	"Glycoside hydrolase, catalytic core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2642.1.S1_at	A	A1TS	POPTR_0015s04890	POPTR_0015s04890 (11)	scaffold_15:5119970-5120457(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g43060.1	expressed protein	Medtr3g109290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26423.1.S1_a_at	A	A1TS	POPTR_0004s19340	POPTR_0004s19340 (11)	scaffold_4:19196901-19197500(-) (11)	POPTR_0009s14480 (7)	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT4G35230.1	BR-signaling kinase 1 	LOC_Os03g04050.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26423.3.S1_a_at	A	A1TS	POPTR_0019s11280	POPTR_0019s11280 (11)	scaffold_19:12622692-12622804(+) (11)	NA	Q6GQV7	Erythroid differentiation-related factor 1	AT1G35660.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 309 Blast hits to 256 proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). 	LOC_Os01g65320.1	expressed protein	Medtr1g068580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26424.2.S1_a_at	A	A1TS	POPTR_0019s11360	POPTR_0019s11360 (11)	scaffold_19:12683709-12684783(+) (11)	NA	Q93X17	Snakin-2	AT1G22690.3	Gibberellin-regulated family protein 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr3g156410.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26440.1.S1_at	A	A1TS	POPTR_0016s08250	POPTR_0016s08250 (10)	scaffold_16:6089867-6090537(+) (10)	POPTR_0005s12535 (7)	Q16629	Serine/arginine-rich splicing factor 7	AT2G37340.1	arginine/serine-rich zinc knuckle-containing protein 33 	LOC_Os03g17710.2	"splicing factor, arginine/serine-rich, putative, expressed"	AC235022_4.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait AC235022.1 16650-20786 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.26440.3.S1_a_at	A	A2TS	POPTR_0006s23170	POPTR_0016s08250 (11)//POPTR_0006s23170 (11)	scaffold_16:6088085-6089006(+) (11)//scaffold_6:22002689-22003647(+) (11)	NA	Q16629	Serine/arginine-rich splicing factor 7	AT3G53500.2	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 	LOC_Os03g17710.2	"splicing factor, arginine/serine-rich, putative, expressed"	AC235022_4.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait AC235022.1 16650-20786 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.26443.2.S1_a_at	A	A1MS	POPTR_0002s25940	POPTR_0002s25940 (11)	scaffold_2:22941556-22941876(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26449.1.S1_at	A	A1TS	POPTR_0011s12170	POPTR_0011s12170 (9)	scaffold_11:14938193-14938627(+) (9)	NA	Q8BY89	Choline transporter-like protein 2	AT3G15380.1	Plasma-membrane choline transporter family protein 	LOC_Os04g58470.1	"choline transporter-related, putative, expressed"	Medtr5g091650.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26454.2.A1_at	A	A1TS	POPTR_0014s02810	POPTR_0014s02810 (10)	scaffold_14:2331412-2333759(-) (10)	NA	Q9M7Q4	ABSCISIC ACID-INSENSITIVE 5-like protein 5	AT1G45249.1	abscisic acid responsive elements-binding factor 2 	LOC_Os09g28310.1	"bZIP transcription factor, putative, expressed"	Medtr3g147720.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.26458.1.A1_at	A	A1TS	POPTR_0009s10350	POPTR_0009s10350 (11)	scaffold_9:8904803-8905266(-) (11)	NA	NA	NA	AT2G15560.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os08g13390.2	expressed protein	Medtr4g130000.1	Protein of unknown function DUF537 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26460.1.A1_at	A	A1MS	POPTR_0013s00470	POPTR_0013s00470 (9)	scaffold_13:194956-195410(-) (9)	NA	NA	NA	AT3G62200.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os07g44320.1	expressed protein	AC235094_25.1	Protein of unknown function DUF537 AC235094.1 130248-133379 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26464.1.A1_at	A	A1TS	POPTR_0005s23640	POPTR_0005s23640 (10)	scaffold_5:22362248-22362760(+) (10)	NA	Q9LUH8	Heat stress transcription factor A-6b	AT3G22830.1	heat shock transcription factor  A6B 	LOC_Os07g08140.1	"heat stress transcription factor, putative, expressed"	Medtr1g083770.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.26467.1.A1_s_at	A	A1TS	POPTR_0003s01670	POPTR_0003s01670 (11)	scaffold_3:1543394-1543860(+) (11)	NA	Q05471	Helicase SWR1	AT3G12810.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os02g46450.2	"helicase conserved C-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.26469.3.A1_a_at	A	A1MS	POPTR_0011s07420	POPTR_0011s07420 (10)	scaffold_11:8276712-8278102(-) (11)	NA	Q08448	Putative lipase YOR059C	AT1G29120.2	Hydrolase-like protein family 	LOC_Os06g06080.1	"serine esterase family protein, putative, expressed"	Medtr4g134610.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26469.4.A1_a_at	A	A1TS	POPTR_0011s07420	POPTR_0011s07420 (11)	scaffold_11:8276202-8276358(-) (11)	NA	Q08448	Putative lipase YOR059C	AT1G29120.2	Hydrolase-like protein family 	LOC_Os06g06080.1	"serine esterase family protein, putative, expressed"	Medtr4g134610.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26476.1.A1_s_at	A	A1TS	POPTR_0008s12680	POPTR_0008s12680 (11)	scaffold_8:8200454-8200929(+) (11)	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.2	expressed protein	Medtr4g156620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26477.1.S1_s_at	A	A1TS	POPTR_0003s13720	POPTR_0003s13720 (9)	scaffold_3:14031071-14031543(+) (11)	NA	NA	NA	AT5G41790.1	COP1-interactive protein 1 	NA	NA	Medtr5g009510.1	hypothetical protein 	GO:0016032|viral reproduction	NA	NA
PtpAffx.26479.1.S1_at	A	A2TS	POPTR_0009s06500	POPTR_0009s06500 (11)//POPTR_0001s27240 (9)	scaffold_1:26132967-26134256(+) (9)//scaffold_9:6260500-6261782(+) (11)	NA	Q8L4Y5	Actin-related protein 7	AT3G60830.1	actin-related protein 7 	LOC_Os03g56970.1	"actin, putative, expressed"	Medtr3g029560.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.26480.2.A1_at	A	A1MS	POPTR_0006s25520	POPTR_0006s25520 (11)	scaffold_6:23920500-23921023(-) (11)	NA	NA	NA	AT5G11600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g51754.1	expressed protein	Medtr1g007400.1	"Contains a weak similarity to Rap8, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26487.1.S1_at	A	A1TS	POPTR_0016s00390	POPTR_0016s00390 (10)	scaffold_16:92476-93472(-) (10)	NA	Q7ZXT3	Enhancer of mRNA-decapping protein 4	AT3G13300.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g033290.1	"Peptidase S26A, signal peptidase I; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26494.1.A1_at	A	A1TS	POPTR_0014s01930	POPTR_0014s01930 (11)	scaffold_14:1743693-1745207(+) (11)	NA	NA	NA	AT1G27700.1	Syntaxin/t-SNARE family protein 	LOC_Os10g20240.1	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr1g023580.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.26497.1.S1_at	A	A1TS	POPTR_0013s10180	POPTR_0013s10180 (11)	scaffold_13:10182784-10183249(+) (11)	NA	Q8GYB8	12-oxophytodienoate reductase 2	AT1G76690.1	12-oxophytodienoate reductase 2 	LOC_Os06g11290.1	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006930.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.265.1.A1_at	A	A1TS	POPTR_0014s10950	POPTR_0014s10950 (11)	scaffold_14:8164823-8164884(-) (11)	NA	Q41328	Pto-interacting protein 1	AT3G62220.1	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.265.2.A1_s_at	A	A1TS	POPTR_0014s10950	POPTR_0014s10950 (11)	scaffold_14:8164994-8166442(-) (11)	NA	Q41328	Pto-interacting protein 1	AT3G62220.1	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.26503.1.S1_at	A	A1TS	POPTR_0008s14900	POPTR_0008s14900 (9)	scaffold_8:9921136-9921415(+) (9)	NA	P46014	Protein phosphatase 2C 70	AT5G19280.1	kinase associated protein phosphatase 	LOC_Os07g11010.1	"protein Kinase-associated protein phosphatase, putative, expressed"	Medtr5g005970.1	Forkhead-associated; Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26512.1.S1_at	A	A1TS	POPTR_0004s11580	POPTR_0004s11580 (11)	scaffold_4:10368390-10368891(+) (11)	NA	Q96MD7	Uncharacterized protein C9orf85	AT3G02220.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2039 (InterPro:IPR019351); Has 215 Blast hits to 215 proteins in 94 species: Archae - 2; Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os01g55730.1	"AGAP003732-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26521.1.S1_at	A	A1MS	POPTR_0003s05490	POPTR_0003s05490 (9)	scaffold_3:6770503-6771048(-) (9)	NA	Q9LW86	Probable sulfate transporter 3.4	AT3G15990.1	sulfate transporter 3;4 	LOC_Os06g05160.1	"sulfate transporter, putative, expressed"	AC234703_12.1	Sulphate anion transporter AC234703.1 74838-69482 E EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.26528.1.S1_s_at	A	A2TS	POPTR_0007s11070	POPTR_0007s11070 (11)//POPTR_0007s11040 (9)	scaffold_7:11315077-11324235(+) (11)//scaffold_7:11317543-11324387(+) (9)	NA	Q9MTQ6	Red chlorophyll catabolite reductase (Fragment)	AT4G37000.1	accelerated cell death 2 (ACD2) 	LOC_Os10g25030.1	"red chlorophyll catabolite reductase, putative, expressed"	Medtr5g103790.2	Red chlorophyll catabolite reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26534.1.S1_at	A	A1TS	POPTR_0008s11830	POPTR_0008s11830 (10)	scaffold_8:7575635-7576139(-) (10)	NA	NA	NA	AT4G39670.1	Glycolipid transfer protein (GLTP) family protein 	LOC_Os03g50280.1	"GLTP domain containing protein, putative, expressed"	Medtr2g130020.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.2654.1.S1_at	A	A1TS	POPTR_0006s05820	POPTR_0006s05820 (10)	scaffold_6:4109339-4109823(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26548.2.A1_a_at	A	A1TS	POPTR_0009s10060	POPTR_0009s10060 (11)	scaffold_9:8749102-8749958(-) (11)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.26548.3.A1_at	A	A1TS	POPTR_0001s30920	POPTR_0001s30920 (10)	scaffold_1:29350603-29352383(-) (10)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.2655.2.S1_at	A	A1TS	POPTR_0002s01840	POPTR_0002s01840 (11)	scaffold_2:981096-981550(-) (11)	NA	Q9XHM1	Eukaryotic translation initiation factor 3 subunit C	AT3G56150.2	eukaryotic translation initiation factor 3C 	LOC_Os02g03080.1	"eukaryotic translation initiation factor 3 subunit C, putative, expressed"	Medtr2g005440.1	"Proteasome component region PCI; Eukaryotic translation initiation factor 3 subunit 8, C-terminal; Eukaryotic translation initiation factor 3 subunit 8, N-terminal; Winged helix repressor DNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	GO:0005852|eukaryotic translation initiation factor 3 complex
PtpAffx.2655.3.S1_a_at	A	A1TS	POPTR_0006s08720	POPTR_0006s08720 (11)	scaffold_6:6391877-6392637(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G02230.2	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g16670.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr4g084040.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.26552.1.S1_a_at	A	A2TS	POPTR_0002s00280	POPTR_0005s28160 (11)//POPTR_0002s00280 (11)	scaffold_2:47167-47346(+) (11)//scaffold_5:25510885-25511064(-) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT1G76670.1	Nucleotide-sugar transporter family protein 	LOC_Os07g39280.1	"transporter-related, putative, expressed"	Medtr4g141240.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26552.1.S1_at	A	A1TS	POPTR_0005s28160	POPTR_0005s28160 (11)	scaffold_5:25510604-25511102(-) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT1G21070.1	Nucleotide-sugar transporter family protein 	LOC_Os07g39280.1	"transporter-related, putative, expressed"	Medtr4g141240.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.26552.2.A1_at	A	A1TS	POPTR_0002s00280	POPTR_0002s00280 (11)	scaffold_2:47074-47544(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT1G76670.1	Nucleotide-sugar transporter family protein 	LOC_Os07g39280.1	"transporter-related, putative, expressed"	Medtr4g141240.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26556.1.S1_at	A	A1TA	POPTR_0013s11900	POPTR_0013s11900 (11)	scaffold_13:12531269-12531776(-) (11)	NA	Q9C8N5	Protein SENSITIVE TO PROTON RHIZOTOXICITY 1	AT1G34370.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g65080.4	"ZOS1-18 - C2H2 zinc finger protein, expressed"	Medtr3g101820.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.26557.1.A1_at	A	A1TS	POPTR_0007s05730	POPTR_0007s05730 (11)	scaffold_7:3851928-3852420(-) (11)	NA	NA	NA	AT4G39790.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g07980.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr4g140290.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26558.2.S1_at	A	A1MS	POPTR_0010s05840	POPTR_0010s05840 (11)	scaffold_10:7298155-7298193(-) (11)	NA	Q42656	Alpha-galactosidase	AT3G26380.1	Melibiase family protein 	LOC_Os01g33420.1	"glycosyl hydrolase family protein 27, putative, expressed"	Medtr3g102420.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26558.3.S1_s_at	A	A1TS	POPTR_0010s05840	POPTR_0010s05840 (11)	scaffold_10:7298837-7299037(-) (11)	NA	Q42656	Alpha-galactosidase	AT3G26380.1	Melibiase family protein 	LOC_Os01g33420.1	"glycosyl hydrolase family protein 27, putative, expressed"	Medtr3g102420.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26559.1.A1_at	A	A1TS	POPTR_0010s16560	POPTR_0010s16560 (11)	scaffold_10:15486234-15486514(-) (11)	NA	NA	NA	AT2G03630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os07g20270.1	expressed protein	Medtr5g048120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2656.1.A1_at	A	A1TS	POPTR_0025s00730	POPTR_0025s00730 (11)	scaffold_25:379146-379216(-) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT2G11520.1	calmodulin-binding receptor-like cytoplasmic kinase 3 	LOC_Os09g03620.1	"wall-associated receptor kinase-like 20 precursor, putative, expressed"	Medtr8g121680.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.26561.1.A1_at	A	A1TS	POPTR_0007s04880	POPTR_0007s04880 (11)	scaffold_7:3074531-3074804(+) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26565.1.A1_at	A	A1TS	POPTR_0014s14620	POPTR_0014s14620 (11)	scaffold_14:10685554-10686011(-) (11)	NA	Q9Z321	DNA topoisomerase 3-beta-1	AT2G32000.1	"DNA topoisomerase, type IA, core "	LOC_Os09g32450.1	"DNA topoisomerase 3 protein, putative, expressed"	Medtr3g104340.1	DNA topoisomerase I; N-6 Adenine-specific DNA methylase; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003916|DNA topoisomerase activity	GO:0005694|chromosome
PtpAffx.26566.1.A1_at	A	A1TA	POPTR_0003s12760	POPTR_0003s12760 (11)	scaffold_3:13242110-13242647(-) (11)	NA	NA	NA	AT4G11450.1	Protein of unknown function (DUF3527) 	LOC_Os10g40324.1	expressed protein	Medtr4g149400.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26568.1.A1_at	A	A1TS	POPTR_0001s11570	POPTR_0001s11570 (11)	scaffold_1:9002363-9002871(+) (11)	NA	A4IG72	Transforming growth factor-beta receptor-associated protein 1 homolog	AT1G22860.1	Vacuolar sorting protein 39 	LOC_Os05g01360.1	expressed protein	Medtr8g093370.1	"EMB2754 ; binding, putative "	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	NA
PtpAffx.26569.1.A1_at	A	A1TS	POPTR_0015s11760	POPTR_0015s11760 (11)	scaffold_15:12300869-12301045(+) (11)	NA	NA	NA	AT5G50970.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g63470.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g151320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26581.1.S1_a_at	A	A1TS	POPTR_0008s06890	POPTR_0008s06890 (11)	scaffold_8:4133421-4133527(-) (11)	POPTR_0010s19570 (8)	Q09690	Dual specificity protein kinase pom1	AT2G40120.1	Protein kinase superfamily protein 	LOC_Os01g61620.1	"protein kinase family protein, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.26581.1.S1_at	A	A1TS	POPTR_0008s06890	POPTR_0008s06890 (11)	scaffold_8:4131884-4133372(-) (11)	NA	Q09690	Dual specificity protein kinase pom1	AT2G40120.1	Protein kinase superfamily protein 	LOC_Os01g61620.1	"protein kinase family protein, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.26581.2.A1_at	A	A1TS	POPTR_0008s06890	POPTR_0008s06890 (11)	scaffold_8:4128173-4129696(-) (11)	NA	Q09690	Dual specificity protein kinase pom1	AT2G40120.1	Protein kinase superfamily protein 	LOC_Os01g61620.1	"protein kinase family protein, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.26581.3.S1_a_at	A	A1TS	POPTR_0008s06890	POPTR_0008s06890 (11)	scaffold_8:4128013-4128255(-) (11)	NA	Q09690	Dual specificity protein kinase pom1	AT2G40120.1	Protein kinase superfamily protein 	LOC_Os01g61620.1	"protein kinase family protein, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.26585.2.A1_at	A	A1TS	POPTR_0016s05210	POPTR_0016s05210 (11)	scaffold_16:3164536-3164814(-) (11)	NA	Q9FL51	Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940	AT5G06940.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g39650.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr7g111090.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.26590.1.A1_at	A	A1TS	POPTR_0001s13240	POPTR_0001s13240 (9)	scaffold_1:10337782-10338164(-) (9)	NA	Q93ZM9	Protein TIFY 9	AT5G13220.1	jasmonate-zim-domain protein 10 	LOC_Os04g32480.1	"zinc-finger protein, putative, expressed"	Medtr5g013680.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26590.3.A1_a_at	A	A1TS	POPTR_0003s16350	POPTR_0003s16350 (11)	scaffold_3:15929122-15929428(-) (11)	NA	Q93ZM9	Protein TIFY 9	AT5G13220.1	jasmonate-zim-domain protein 10 	LOC_Os04g32480.1	"zinc-finger protein, putative, expressed"	Medtr5g013690.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26591.1.A1_s_at	A	A1TS	POPTR_0019s03530	POPTR_0019s03530 (11)	scaffold_19:3616757-3617732(+) (11)	NA	O07051	L-allo-threonine aldolase	AT1G08630.4	threonine aldolase 1 	LOC_Os04g43650.2	"L-allo-threonine aldolase, putative, expressed"	Medtr1g093690.1	"Aromatic amino acid beta-eliminating lyase/threonine aldolase; Polynucleotidyl transferase, Ribonuclease H fold; ; "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity	NA
PtpAffx.26592.1.S1_at	A	A1TS	POPTR_0002s17990	POPTR_0002s17990 (9)	scaffold_2:13893353-13893799(+) (9)	NA	Q9H0Z9	RNA-binding protein 38	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	CU179634_3.1	RNA-binding region RNP-1 (RNA recognition motif) CU179634.6 7913-3383 H EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.26594.1.A1_s_at	A	A1TS	POPTR_0017s11360	POPTR_0017s11360 (11)	scaffold_17:11116591-11117780(+) (11)	NA	Q54N48	Protein CLP1 homolog	AT3G04680.2	CLP-similar protein 3 	LOC_Os02g12570.1	"pre-mRNA cleavage complex II protein Clp1, putative, expressed"	Medtr1g146380.1	Pre-mRNA cleavage complex II Clp1 	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	GO:0005525|GTP binding	NA
PtpAffx.26595.1.A1_at	A	A1TA	POPTR_0005s08640	POPTR_0005s08640 (11)	scaffold_5:6012960-6013458(+) (11)	NA	O65012	Cytochrome P450 78A4	AT5G09970.1	"cytochrome P450, family 78, subfamily A, polypeptide 7 "	LOC_Os10g26340.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.26598.1.A1_at	A	A1MS	POPTR_0014s11750	POPTR_0014s11750 (11)	scaffold_14:8722534-8722728(-) (11)	NA	O04251	BRCT domain-containing protein At4g02110	AT4G02110.1	transcription coactivators 	LOC_Os03g19190.1	"TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed"	Medtr1g107030.1	"BRCT; Zinc finger, FYVE/PHD-type "	NA	NA	GO:0005622|intracellular
PtpAffx.26606.2.S1_a_at	A	A1TS	POPTR_0010s19820	POPTR_0010s19820 (11)	scaffold_10:17619889-17621752(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g089630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26608.1.A1_at	A	A1TS	POPTR_0005s26230	POPTR_0005s26230 (11)	scaffold_5:24299447-24300339(+) (11)	NA	NA	NA	AT4G24175.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g24410.1	"kinesin heavy chain isolog, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26610.1.A1_at	A	A1TS	POPTR_0009s16480	POPTR_0009s16480 (11)	scaffold_9:12507624-12507960(+) (11)	NA	Q5AQ76	Protein transport protein SEC24	AT2G27460.1	sec23/sec24 transport family protein 	LOC_Os05g37120.1	"sec23/Sec24 zinc finger family protein, expressed"	NA	NA	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.26613.1.S1_at	A	A1TS	POPTR_0004s05270	POPTR_0004s05270 (11)	scaffold_4:4001557-4002055(-) (11)	NA	P93162	"Magnesium-chelatase subunit chlI, chloroplastic"	AT5G45930.1	magnesium chelatase i2 	LOC_Os03g36540.1	"magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed"	Medtr2g018830.1	"Magnesium chelatase, ChlI subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2662.1.A1_a_at	A	A2TS	POPTR_0013s07360	POPTR_0013s07360 (11)//POPTR_0019s05990 (11)	scaffold_13:6148250-6148406(+) (11)//scaffold_19:6423345-6423501(-) (11)	NA	NA	NA	AT1G64890.1	Major facilitator superfamily protein 	LOC_Os05g32320.1	"integral membrane transporter family protein, putative, expressed"	Medtr3g009870.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2662.1.A1_at	A	A1TS	POPTR_0013s07360	POPTR_0013s07360 (11)	scaffold_13:6148120-6148642(+) (11)	NA	NA	NA	AT1G64890.1	Major facilitator superfamily protein 	LOC_Os05g32320.1	"integral membrane transporter family protein, putative, expressed"	Medtr3g009870.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2662.2.S1_at	A	A1TS	POPTR_0019s05990	POPTR_0019s05990 (11)	scaffold_19:6423073-6423581(-) (11)	NA	NA	NA	AT1G64890.1	Major facilitator superfamily protein 	LOC_Os05g32320.1	"integral membrane transporter family protein, putative, expressed"	Medtr3g009870.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26621.1.A1_s_at	A	A1TS	POPTR_0001s41420	POPTR_0001s41420 (10)	scaffold_1:41027918-41028115(-) (10)	NA	NA	NA	AT4G27430.2	COP1-interacting protein 7 	LOC_Os03g64320.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26627.1.A1_at	A	A1TS	POPTR_0003s14190	POPTR_0003s14190 (10)	scaffold_3:14318571-14319487(+) (10)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26629.1.S1_at	A	A1TS	POPTR_0017s05490	POPTR_0017s05490 (11)	scaffold_17:4351365-4352321(+) (11)	NA	O04153	Calreticulin-3	AT1G08450.1	calreticulin 3 	LOC_Os05g43170.1	"calreticulin precursor protein, putative, expressed"	Medtr7g089980.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
PtpAffx.26633.1.S1_at	A	A1TS	POPTR_0001s01300	POPTR_0001s01300 (11)	scaffold_1:975952-976589(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26639.2.A1_at	A	A1TS	POPTR_0006s00240	POPTR_0006s00240 (11)	scaffold_6:29479-29660(+) (11)	NA	Q40193	Ras-related protein Rab11C	AT1G07410.1	RAB GTPase homolog A2B 	LOC_Os03g60870.1	"ras-related protein, putative, expressed"	Medtr3g092520.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.2664.1.S1_at	A	A1TS	POPTR_0003s05860	POPTR_0003s05860 (11)	scaffold_3:7235501-7235996(-) (11)	NA	NA	NA	AT1G52720.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g07970.1	expressed protein	Medtr8g119350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26642.1.S1_at	A	A1TS	POPTR_0004s18140	POPTR_0004s18140 (10)	scaffold_4:18130818-18131101(-) (10)	NA	NA	NA	AT4G38580.1	farnesylated protein 6 	LOC_Os04g17100.1	"heavy metal-associated domain containing protein, expressed"	Medtr4g098440.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.26642.2.A1_a_at	A	A1TS	POPTR_0004s18140	POPTR_0004s18140 (11)	scaffold_4:18132022-18132162(-) (11)	NA	NA	NA	AT4G38580.1	farnesylated protein 6 	LOC_Os04g17100.1	"heavy metal-associated domain containing protein, expressed"	Medtr4g098440.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.26642.2.A1_at	A	A1MS	POPTR_0004s18140	POPTR_0004s18140 (11)	scaffold_4:18131597-18132032(-) (11)	NA	NA	NA	AT4G38580.1	farnesylated protein 6 	LOC_Os04g17100.1	"heavy metal-associated domain containing protein, expressed"	Medtr4g098440.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.26643.1.S1_at	A	A1TS	POPTR_0008s09370	POPTR_0008s09370 (11)	scaffold_8:5797526-5799583(-) (11)	NA	Q9BRT8	COBW domain-containing protein 1	AT1G26520.1	Cobalamin biosynthesis CobW-like protein 	LOC_Os07g40790.2	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2665.1.S1_at	A	A1TS	POPTR_0006s04680	POPTR_0006s04680 (11)	scaffold_6:3213699-3214117(-) (11)	POPTR_0006s04580 (8)	Q9ZSK5	Zeatin O-glucosyltransferase	AT2G15490.1	UDP-glycosyltransferase 73B4 	LOC_Os04g46980.1	"cis-zeatin O-glucosyltransferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26657.1.S1_a_at	A	A1TS	POPTR_0008s16490	POPTR_0008s16490 (10)	scaffold_8:11064512-11065454(-) (10)	NA	Q9LSW2	Actin-related protein 9	AT5G43500.2	actin-related protein 9 	LOC_Os04g09860.2	"actin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26660.1.S1_at	A	A1TS	POPTR_0001s16550	POPTR_0001s16550 (11)	scaffold_1:13322730-13325254(+) (11)	NA	NA	NA	AT3G14172.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g42410.1	expressed protein	Medtr8g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26689.1.S1_a_at	A	A1TS	POPTR_0008s06050	POPTR_0008s06050 (11)	scaffold_8:3568025-3568168(+) (11)	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os03g16150.3	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.26689.1.S1_at	A	A1TS	POPTR_0008s06050	POPTR_0008s06050 (11)	scaffold_8:3568217-3568533(+) (11)	POPTR_0008s00720 (8)	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os03g16150.3	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.26698.1.S1_at	A	A1TS	POPTR_0005s26580	POPTR_0005s26580 (11)	scaffold_5:24536089-24537003(-) (11)	NA	NA	NA	AT1G20225.1	Thioredoxin superfamily protein 	LOC_Os09g37020.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26706.1.S1_at	A	A1TS	POPTR_0013s05370	POPTR_0013s05370 (11)	scaffold_13:3840034-3840114(+) (11)	POPTR_0019s05130 (6)	Q93YX4	5'-adenylylsulfate reductase-like 5	AT3G03860.1	APR-like 5 	LOC_Os03g59170.1	"OsAPRL5  adenosine 5'-phosphosulfate reductase-like OsAPRL5, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26721.1.A1_s_at	A	A1TS	POPTR_0005s26140	POPTR_0005s26140 (11)	scaffold_5:24223475-24223642(-) (11)	NA	P18025	Tubulin beta-1 chain	AT1G20010.1	tubulin beta-5 chain 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.26732.1.A1_s_at	A	A1TS	POPTR_0013s06460	POPTR_0013s06460 (11)	scaffold_13:5049801-5050416(+) (11)	NA	Q8RXE7	Probable ADP-ribosylation factor GTPase-activating protein AGD14	AT1G08680.1	ARF GAP-like zinc finger-containing protein ZIGA4 	LOC_Os03g20720.1	"GTPase-activating protein, putative, expressed"	Medtr6g102260.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	GO:0005622|intracellular
PtpAffx.26747.1.A1_at	A	A1TS	POPTR_0001s37970	POPTR_0001s37970 (10)	scaffold_1:37035214-37035751(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT5G55950.1	Nucleotide/sugar transporter family protein 	LOC_Os02g49260.1	"transporter-related, putative, expressed"	Medtr5g103910.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26757.2.A1_a_at	A	A1TS	POPTR_0003s08860	POPTR_0003s08860 (11)	scaffold_3:10190795-10191106(-) (11)	POPTR_0001s02680 (8)	Q8RX22	MND1-interacting protein 1	AT2G35330.1	RING/U-box superfamily protein 	LOC_Os09g20550.1	"zinc finger protein-related, putative, expressed"	Medtr8g102830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2677.3.A1_a_at	A	A1TS	POPTR_0010s11460	POPTR_0010s11460 (10)	scaffold_10:11719201-11719733(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26811.1.S1_at	A	A1TS	POPTR_0018s03060	POPTR_0018s03060 (11)	scaffold_18:2734724-2736808(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26817.1.S1_at	A	A1TS	POPTR_0006s26220	POPTR_0006s26220 (11)	scaffold_6:24487152-24487658(+) (11)	NA	NA	NA	AT2G25680.1	molybdate transporter 1 	LOC_Os08g01120.1	"sulfate transporter, putative, expressed"	Medtr3g135970.1	Sulphate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26823.1.S1_at	A	A1MS	POPTR_0007s12290	POPTR_0007s12290 (11)	scaffold_7:12606893-12607377(+) (11)	NA	NA	NA	AT4G36830.1	GNS1/SUR4 membrane protein family 	LOC_Os12g43890.1	"GNS1/SUR4 membrane family protein, putative, expressed"	Medtr8g093830.1	GNS1/SUR4 membrane protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.26833.1.A1_s_at	A	A1TS	POPTR_0003s15410	POPTR_0003s15410 (11)	scaffold_3:15200652-15202396(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26834.1.S1_at	A	A1TS	POPTR_0002s04620	POPTR_0002s04620 (11)	scaffold_2:2881188-2881654(-) (11)	NA	O22768	Transcription factor UNE12	AT4G02590.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g58330.1	"BHLH transcription factor, putative, expressed"	Medtr1g083450.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.26834.2.S1_at	A	A1TS	POPTR_0005s23930	POPTR_0005s23930 (11)	scaffold_5:22631684-22632179(+) (11)	NA	O22768	Transcription factor UNE12	AT4G02590.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g58330.1	"BHLH transcription factor, putative, expressed"	Medtr1g083450.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.26840.1.S1_at	A	A1TS	POPTR_0013s03700	POPTR_0013s03700 (10)	scaffold_13:2358670-2359180(-) (10)	NA	Q9ZU38	Probable ribose-5-phosphate isomerase	AT3G04790.1	"Ribose 5-phosphate isomerase, type A protein "	LOC_Os07g08030.1	"ribose-5-phosphate isomerase A, putative, expressed"	Medtr7g140770.1	Ribose 5-phosphate isomerase 	"GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0009052|""pentose-phosphate shunt, non-oxidative branch"""	GO:0004751|ribose-5-phosphate isomerase activity	NA
PtpAffx.26858.1.S1_at	A	A1TS	POPTR_0013s00530	POPTR_0013s00530 (11)	scaffold_13:245803-246785(+) (11)	NA	Q9SJG2	Probable receptor-like protein kinase At2g42960	AT1G56720.3	Protein kinase superfamily protein 	LOC_Os01g21960.1	"serine/threonine-protein kinase, putative, expressed"	AC235094_15.1	"Serine/threonine protein kinase, active site AC235094.1 73772-69130 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.26865.1.S1_at	A	A1TS	POPTR_0017s08210	POPTR_0017s08210 (10)	scaffold_17:6659073-6659374(-) (10)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT2G32800.1	protein kinase family protein 	LOC_Os11g25860.1	"protein Kinase, putative, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.26878.1.S1_at	A	A1TS	POPTR_0006s02810	POPTR_0006s02810 (11)	scaffold_6:1772062-1772807(-) (11)	NA	Q945B7	"Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic"	AT3G56940.1	"dicarboxylate diiron protein, putative (Crd1) "	LOC_Os01g17170.1	"magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed"	Medtr7g105140.1	Ferritin/ribonucleotide reductase-like; Ferritin-related 	NA	GO:0046872|metal ion binding	NA
PtpAffx.26881.1.S1_at	A	A1TS	POPTR_0016s11470	POPTR_0016s11470 (11)	scaffold_16:10443742-10444183(+) (11)	NA	Q58EA2	THO complex subunit 4-A	AT5G59950.5	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g17010.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g078540.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.26894.1.S1_s_at	A	A1TS	POPTR_0018s08910	POPTR_0018s08910 (11)	scaffold_18:9823526-9825087(-) (11)	NA	P28734	"Aspartate aminotransferase, cytoplasmic"	AT5G19550.1	aspartate aminotransferase 2 	LOC_Os01g55540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.2690.2.S1_at	A	A1TS	POPTR_0017s08190	POPTR_0017s08190 (11)	scaffold_17:6655269-6655566(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT4G13640.1	Homeodomain-like superfamily protein 	LOC_Os03g20900.1	"Myb transcription factor, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26900.2.S1_at	A	A1TS	POPTR_0016s08590	POPTR_0016s08590 (9)	scaffold_16:6414267-6414477(+) (9)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT2G37050.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	Medtr7g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.26902.1.S1_at	A	A1TS	POPTR_0006s08740	POPTR_0006s08740 (11)	scaffold_6:6438888-6439519(+) (11)	NA	Q9FJD5	Laccase-17	AT5G60020.1	laccase 17 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g067600.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.26930.1.S1_at	A	A1TS	POPTR_0005s02030	POPTR_0005s02030 (11)	scaffold_5:1326272-1326342(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.26930.2.S1_at	A	A2MS	POPTR_0005s02030	POPTR_0013s01220 (11)//POPTR_0005s02030 (11)	scaffold_13:672580-672634(+) (11)//scaffold_5:1325769-1325823(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.26968.2.A1_a_at	A	A1TA	POPTR_0001s35310	POPTR_0001s35310 (11)	scaffold_1:33649618-33650049(+) (11)//scaffold_1:33649897-33650440(+) (11)//scaffold_1:33650176-33650719(+) (11)//scaffold_1:33650455-33650912(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26968.3.S1_a_at	A	A1TS	POPTR_0001s35310	POPTR_0001s35310 (11)	scaffold_1:33649674-33651170(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26968.3.S1_at	A	A1TS	POPTR_0001s35310	POPTR_0001s35310 (11)	scaffold_1:33651237-33651571(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26979.1.A1_at	A	A1TS	POPTR_0016s01450	POPTR_0016s01450 (11)	scaffold_16:656105-656317(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26979.1.A1_s_at	A	A1TS	POPTR_0016s01450	POPTR_0016s01450 (11)	scaffold_16:655882-656265(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26991.1.S1_at	A	A1TS	POPTR_0003s11730	POPTR_0003s11730 (11)	scaffold_3:12523025-12523418(+) (11)	NA	NA	NA	AT1G12450.1	SNARE associated Golgi protein family 	LOC_Os07g28440.1	"SNARE associated Golgi protein, putative, expressed"	Medtr8g106510.1	"F5O11.19, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26991.2.S1_at	A	A1TS	POPTR_0003s11730	POPTR_0003s11730 (11)	scaffold_3:12521415-12521720(+) (11)	NA	NA	NA	AT1G12450.1	SNARE associated Golgi protein family 	LOC_Os07g28440.1	"SNARE associated Golgi protein, putative, expressed"	Medtr8g106510.1	"F5O11.19, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26991.3.S1_a_at	A	A1TS	POPTR_0003s11730	POPTR_0003s11730 (11)	scaffold_3:12521028-12521103(+) (11)	NA	NA	NA	AT1G12450.1	SNARE associated Golgi protein family 	LOC_Os07g28440.1	"SNARE associated Golgi protein, putative, expressed"	Medtr8g106510.1	"F5O11.19, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26991.3.S1_at	A	A1TS	POPTR_0003s11730	POPTR_0003s11730 (11)	scaffold_3:12519665-12520977(+) (11)	NA	NA	NA	AT1G12450.1	SNARE associated Golgi protein family 	LOC_Os07g28440.1	"SNARE associated Golgi protein, putative, expressed"	Medtr8g106510.1	"F5O11.19, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2700.1.A1_at	A	A1TS	POPTR_0006s19520	POPTR_0006s19520 (10)	scaffold_6:18572133-18573209(+) (10)	NA	NA	NA	AT5G57860.2	Ubiquitin-like superfamily protein 	LOC_Os03g24920.1	"ubiquitin family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27012.1.S1_at	A	A1TS	POPTR_0013s15430	POPTR_0013s15430 (11)	scaffold_13:15409747-15411934(-) (11)	NA	P55871	Eukaryotic translation initiation factor 2 subunit beta	AT5G20920.3	eukaryotic translation initiation factor 2 beta subunit 	LOC_Os03g21550.2	"eukaryotic translation initiation factor 2 subunit beta, putative, expressed"	Medtr5g083360.1	Translation initiation factor IF5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.27012.1.S1_s_at	A	A1TS	POPTR_0013s15430	POPTR_0013s15430 (11)	scaffold_13:15409889-15410056(-) (11)	NA	P55871	Eukaryotic translation initiation factor 2 subunit beta	AT5G20920.3	eukaryotic translation initiation factor 2 beta subunit 	LOC_Os03g21550.2	"eukaryotic translation initiation factor 2 subunit beta, putative, expressed"	Medtr5g083360.1	Translation initiation factor IF5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.27012.2.S1_a_at	A	A3TS	POPTR_0013s15430	POPTR_1510s00200 (11)//POPTR_0019s15180 (11)//POPTR_0013s15430 (11)	scaffold_13:15411672-15411984(-) (11)//scaffold_1510:915-1221(+) (11)//scaffold_19:15747502-15747808(-) (11)	NA	P55871	Eukaryotic translation initiation factor 2 subunit beta	AT5G20920.3	eukaryotic translation initiation factor 2 beta subunit 	LOC_Os03g21550.2	"eukaryotic translation initiation factor 2 subunit beta, putative, expressed"	Medtr5g083360.1	Translation initiation factor IF5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.27012.2.S1_at	A	A1TS	POPTR_1510s00200	POPTR_1510s00200 (11)	scaffold_1510:966-2141(+) (11)	NA	P55871	Eukaryotic translation initiation factor 2 subunit beta	AT5G20920.2	eukaryotic translation initiation factor 2 beta subunit 	LOC_Os03g21550.2	"eukaryotic translation initiation factor 2 subunit beta, putative, expressed"	Medtr5g083360.1	Translation initiation factor IF5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.27019.1.S1_at	A	A1TS	POPTR_0004s13500	POPTR_0004s13500 (11)	scaffold_4:13707477-13708954(-) (11)	NA	A7Z050	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1	AT5G15070.1	Phosphoglycerate mutase-like family protein 	LOC_Os03g48300.1	"histidine acid phosphatase, putative, expressed"	Medtr7g008460.1	Histidine acid phosphatase; Ferritin/ribonucleotide reductase-like 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.2703.1.A1_a_at	A	A1TS	POPTR_0011s15730	POPTR_0011s15730 (11)	scaffold_11:17823253-17823824(+) (11)	NA	Q5SPW0	Vacuolar protein sorting-associated protein 54	AT4G19490.2	VPS54 	LOC_Os04g13470.1	expressed protein	NA	NA	"GO:0042147|""retrograde transport, endosome to Golgi"""	GO:0005515|protein binding	NA
PtpAffx.2703.2.A1_at	A	A1TS	POPTR_0011s15730	POPTR_0011s15730 (10)	scaffold_11:17823390-17823732(+) (10)	NA	Q5SPW0	Vacuolar protein sorting-associated protein 54	AT4G19490.2	VPS54 	LOC_Os04g13470.1	expressed protein	NA	NA	"GO:0042147|""retrograde transport, endosome to Golgi"""	GO:0005515|protein binding	NA
PtpAffx.2704.1.S1_at	A	A1TS	POPTR_0008s15370	POPTR_0008s15370 (11)	scaffold_8:10239903-10240075(+) (11)	NA	NA	NA	AT3G22520.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 717 Blast hits to 703 proteins in 179 species: Archae - 14; Bacteria - 134; Metazoa - 141; Fungi - 74; Plants - 209; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). "	LOC_Os03g53590.2	expressed protein	Medtr5g006500.1	"CDPK adapter protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2704.2.S1_a_at	A	A1TS	POPTR_0008s15370	POPTR_0008s15370 (11)	scaffold_8:10238866-10239383(+) (11)	NA	NA	NA	AT3G22520.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 717 Blast hits to 703 proteins in 179 species: Archae - 14; Bacteria - 134; Metazoa - 141; Fungi - 74; Plants - 209; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). "	LOC_Os03g53590.2	expressed protein	Medtr5g006500.1	"CDPK adapter protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2704.3.S1_a_at	A	A1TS	POPTR_0008s15370	POPTR_0008s15370 (11)	scaffold_8:10239489-10239686(+) (11)	NA	NA	NA	AT3G22520.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 717 Blast hits to 703 proteins in 179 species: Archae - 14; Bacteria - 134; Metazoa - 141; Fungi - 74; Plants - 209; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). "	LOC_Os03g53590.2	expressed protein	Medtr5g006500.1	"CDPK adapter protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27058.1.S1_at	A	A1TS	POPTR_0012s08700	POPTR_0012s08700 (11)	scaffold_12:9806176-9808103(-) (11)	NA	NA	NA	AT5G63135.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr3g114780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2708.2.S1_s_at	A	A1TS	POPTR_0002s17400	POPTR_0002s17400 (11)	scaffold_2:13161401-13161854(-) (11)	NA	Q6PNC0	DmX-like protein 1	AT2G46560.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g37120.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27083.1.A1_at	A	A1TS	POPTR_0013s13540	POPTR_0013s13540 (9)	scaffold_13:13992483-13992820(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27083.2.S1_a_at	A	A1TS	POPTR_0013s13540	POPTR_0013s13540 (11)	scaffold_13:13992165-13992434(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2709.1.S1_at	A	A1TS	POPTR_0007s10760	POPTR_0007s10760 (11)	scaffold_7:10813006-10813423(-) (11)	NA	Q58821	Uncharacterized protein MJ1426	AT4G36910.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os08g22149.1	"CBS domain containing membrane protein, putative, expressed"	Medtr5g016660.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2709.2.S1_a_at	A	A2TS	POPTR_0007s10760	POPTR_0007s10760 (11)//POPTR_0005s18410 (9)	scaffold_7:10817238-10817396(-) (11)	NA	Q58821	Uncharacterized protein MJ1426	AT4G36910.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os08g22149.1	"CBS domain containing membrane protein, putative, expressed"	Medtr5g016660.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27090.1.S1_a_at	A	A2TS	POPTR_0005s14280	POPTR_0005s14280 (11)//POPTR_0007s11310 (11)	scaffold_5:11365145-11365233(-) (11)//scaffold_7:11666843-11666931(-) (11)	NA	NA	NA	AT3G50560.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g37130.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr8g097080.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.27090.1.S1_at	A	A1TS	POPTR_0005s14280	POPTR_0005s14280 (11)	scaffold_5:11364770-11365093(-) (11)	NA	NA	NA	AT3G50560.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g37130.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr8g097080.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.27090.2.A1_at	A	A1TS	POPTR_0007s11310	POPTR_0007s11310 (11)	scaffold_7:11666452-11666833(-) (11)	NA	Q5E9H7	Estradiol 17-beta-dehydrogenase 12	AT3G50560.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g37130.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr8g097080.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.27096.1.A1_at	A	A1TS	POPTR_0005s02530	POPTR_0005s02530 (9)	scaffold_5:1619696-1621021(-) (9)	NA	Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G27730.1	Protein of unknown function (DUF1624) 	LOC_Os01g70550.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr7g138520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27098.1.S1_at	A	A1TS	POPTR_0001s24680	POPTR_0001s24680 (10)	scaffold_1:23926749-23927190(-) (10)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT5G24318.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g114760.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.2710.2.A1_at	A	A1TS	POPTR_0001s45320	POPTR_0001s45320 (11)	scaffold_1:45836624-45838260(-) (11)	NA	Q8L868	"Glucan endo-1,3-beta-glucosidase 11"	AT1G32860.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g64170.3	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.2710.3.S1_at	A	A1TS	POPTR_0001s45320	POPTR_0001s45320 (11)	scaffold_1:45838785-45839372(-) (11)	NA	Q8L868	"Glucan endo-1,3-beta-glucosidase 11"	AT1G32860.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g64170.3	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.27102.1.A1_at	A	A1TS	POPTR_0001s30820	POPTR_0001s30820 (11)	scaffold_1:29270906-29271248(+) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.27102.2.S1_at	A	A1TS	POPTR_0009s09950	POPTR_0009s09950 (10)	scaffold_9:8691070-8691578(+) (10)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.27102.2.S1_s_at	A	A2TS	POPTR_0001s30820	POPTR_0009s09950 (11)//POPTR_0001s30820 (11)	scaffold_1:29270796-29271022(+) (11)//scaffold_9:8691106-8691332(+) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.2712.1.S1_at	A	A1TS	POPTR_0009s07990	POPTR_0009s07990 (11)	scaffold_9:7412898-7413418(+) (11)	NA	NA	NA	AT1G07090.1	Protein of unknown function (DUF640) 	LOC_Os05g39500.1	"DUF640 domain containing protein, putative, expressed"	Medtr5g080780.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2715.1.S1_at	A	A1TS	POPTR_0005s09890	POPTR_0005s09890 (10)	scaffold_5:6981712-6982056(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27152.1.S1_s_at	A	A2TS	POPTR_0005s00690	POPTR_0005s00690 (11)//POPTR_0013s00590 (11)	scaffold_13:283963-284222(+) (11)//scaffold_5:299922-300181(+) (11)	NA	O82491	FACT complex subunit SPT16	AT4G10710.1	global transcription factor C 	LOC_Os04g25550.1	"FACT complex subunit SPT16, putative, expressed"	Medtr3g086680.1	Peptidase M24; 	GO:0009987|cellular process	NA	NA
PtpAffx.27171.1.A1_at	A	A1TS	POPTR_0002s13260	POPTR_0002s13260 (11)	scaffold_2:9866280-9866816(-) (11)	NA	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.27193.1.A1_at	A	A1TS	POPTR_0015s02250	POPTR_0015s02250 (11)	scaffold_15:1578552-1579071(-) (11)	NA	Q9FGL9	Polypyrimidine tract-binding protein homolog 2	AT5G53180.1	polypyrimidine tract-binding protein 2 	LOC_Os01g43170.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr3g124540.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.27199.1.A1_at	A	A1TS	POPTR_0006s11210	POPTR_0006s11210 (11)	scaffold_6:8514527-8515776(-) (11)	NA	Q9ZVI3	KH domain-containing protein At2g38610	AT2G38610.2	RNA-binding KH domain-containing protein 	LOC_Os03g60110.1	"KH domain containing protein, putative, expressed"	Medtr7g080640.1	"KH, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27201.1.A1_at	A	A1TS	POPTR_0012s11950	POPTR_0012s11950 (11)	scaffold_12:12291836-12292122(-) (11)	NA	Q9SKC4	Probable E3 ubiquitin-protein ligase ARI10	AT4G19670.2	RING/U-box superfamily protein 	LOC_Os12g43560.1	"zinc finger, putative, expressed"	Medtr2g034440.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.27201.2.A1_at	A	A1TS	POPTR_0012s11950	POPTR_0012s11950 (11)	scaffold_12:12291556-12291733(-) (11)	NA	Q9SKC4	Probable E3 ubiquitin-protein ligase ARI10	AT4G19670.2	RING/U-box superfamily protein 	LOC_Os12g43560.1	"zinc finger, putative, expressed"	Medtr2g034440.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.2721.1.A1_at	A	A1TS	POPTR_0006s18340	POPTR_0006s18340 (11)	scaffold_6:16730625-16730927(+) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os02g05840.1	"VIL2 protein, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27213.1.S1_at	A	A1TS	POPTR_0008s07890	POPTR_0008s07890 (9)	scaffold_8:4851655-4853889(+) (9)	NA	Q54K56	Beta-hexosaminidase subunit B2	AT1G65590.1	beta-hexosaminidase 3 	LOC_Os01g66700.1	"beta-hexosaminidase precursor, putative, expressed"	Medtr2g080430.1	"Glycoside hydrolase, family 20; ; "	GO:0005975|carbohydrate metabolic process	GO:0004563|beta-N-acetylhexosaminidase activity	NA
PtpAffx.27218.1.A1_at	A	A1TS	POPTR_0002s22410	POPTR_0002s22410 (11)	scaffold_2:19108159-19108763(-) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os10g31950.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27220.1.A1_at	A	A1TS	POPTR_0001s33850	POPTR_0001s33850 (11)	scaffold_1:32010666-32011633(+) (11)	NA	Q9S850	Sulfite oxidase	AT3G01910.1	sulfite oxidase 	LOC_Os08g41830.1	"sulfite oxidase, putative, expressed"	Medtr3g098350.1	Mo-co oxidoreductase dimerisation domain 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0030151|molybdenum ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.27233.1.S1_at	A	A1TS	POPTR_0002s07510	POPTR_0002s07510 (11)	scaffold_2:5128661-5130296(+) (11)	NA	P36862	GTP-binding protein yptV3	AT1G43890.3	RAB GTPASE HOMOLOG B18 	LOC_Os03g05280.1	"ras-related protein, putative, expressed"	Medtr3g143270.1	"Ras GTPase; Sigma-54 factor, interaction region; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.27236.1.A1_s_at	A	A1TS	POPTR_0018s03440	POPTR_0018s03440 (11)	scaffold_18:3014835-3015365(-) (11)	NA	NA	NA	AT4G31570.1	CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). 	LOC_Os02g05490.1	expressed protein	Medtr1g010620.1	Prefoldin 	GO:0016032|viral reproduction	NA	NA
PtpAffx.2725.1.A1_at	A	A1TS	POPTR_0012s01140	POPTR_0012s01140 (11)	scaffold_12:797359-798533(+) (11)	NA	Q40546	"Pyruvate kinase isozyme G, chloroplastic"	AT5G52920.1	plastidic pyruvate kinase beta subunit 1 	LOC_Os01g47080.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.27255.1.S1_at	A	A1TS	POPTR_0006s13130	POPTR_0006s13130 (11)	scaffold_6:10342939-10343483(-) (11)	NA	Q700D2	Zinc finger protein JACKDAW	AT5G03150.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr1g079070.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.27255.2.S1_a_at	A	A1TS	POPTR_0006s13130	POPTR_0006s13130 (11)	scaffold_16:6805759-6806367(+) (11)//scaffold_6:10344585-10345204(-) (11)	POPTR_0016s08990 (8)	Q700D2	Zinc finger protein JACKDAW	AT5G03150.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr1g079070.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.27255.2.S1_at	A	A1TS	POPTR_0006s13130	POPTR_0006s13130 (11)	scaffold_6:10344562-10345159(-) (11)	NA	Q700D2	Zinc finger protein JACKDAW	AT5G03150.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr1g079070.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.27268.1.S1_at	A	A1TS	POPTR_0002s12340	POPTR_0002s12340 (10)	scaffold_2:9160329-9160887(+) (10)	NA	P93147	Isoflavone 2'-hydroxylase	AT5G10610.1	"cytochrome P450, family 81, subfamily K, polypeptide 1 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.27269.1.A1_at	A	A1TS	POPTR_0004s22960	POPTR_0004s22960 (11)	scaffold_4:21803714-21803826(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.27285.1.A1_s_at	A	A1TS	POPTR_0001s14730	POPTR_0001s14730 (11)	scaffold_1:11596548-11598125(-) (11)	NA	Q38942	Rae1-like protein At1g80670	AT1G80670.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g07960.2	"mitotic checkpoint protein, putative, expressed"	Medtr2g008550.1	"Peptidase, cysteine peptidase active site; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27313.1.S1_s_at	A	A1TS	POPTR_0014s10610	POPTR_0014s10610 (11)	scaffold_14:7899234-7899338(-) (11)	NA	Q8RWN7	Protein phosphatase 2C 32	AT2G46920.2	Protein phosphatase 2C family protein 	LOC_Os03g25600.2	"protein phosphatase 2C, putative, expressed"	Medtr8g102940.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2733.1.A1_at	A	A1TS	POPTR_0005s08170	POPTR_0005s08170 (11)	scaffold_5:5618990-5619430(-) (11)	NA	Q9LX20	Aspartic proteinase-like protein 1	AT5G10080.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g51540.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr3g101120.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27339.1.S1_a_at	A	A1TS	POPTR_0005s25790	POPTR_0005s25790 (11)	scaffold_5:23972587-23973001(+) (11)	NA	NA	NA	AT3G27230.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g04680.2	expressed protein	Medtr3g094290.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.274.1.S1_a_at	A	A2TS	POPTR_0002s13330	POPTR_0014s03900 (11)//POPTR_0002s13330 (11)	scaffold_14:3117127-3117275(-) (11)//scaffold_2:9905190-9905338(-) (11)	NA	P82278	"30S ribosomal protein S9, chloroplastic (Fragment)"	AT1G74970.1	ribosomal protein S9 	LOC_Os03g55930.1	"ribosomal protein, putative, expressed"	Medtr1g025880.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.274.1.S1_at	A	A1TS	POPTR_0014s03900	POPTR_0014s03900 (11)	scaffold_14:3116971-3117411(-) (11)	NA	Q9XJ27	"30S ribosomal protein S9, chloroplastic"	AT1G74970.1	ribosomal protein S9 	LOC_Os03g55930.1	"ribosomal protein, putative, expressed"	Medtr1g025880.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.27411.1.S1_at	A	A1TS	POPTR_0015s01210	POPTR_0015s01210 (10)	scaffold_15:765921-766382(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2743.1.S1_at	A	A1TS	POPTR_0005s06840	POPTR_0005s06840 (11)	scaffold_5:4602631-4602945(+) (11)	NA	Q59ZU1	Type 1 phosphatases regulator YPI2	AT2G31305.1	inhibitor-3 	LOC_Os05g18774.3	"protein phosphatase 1 regulatory subunit 11, putative, expressed"	Medtr7g100380.1	Protein phosphatase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27440.1.S1_at	A	A1TS	POPTR_0016s05510	POPTR_0016s05510 (9)	scaffold_16:3448948-3449637(+) (9)	NA	P35336	Polygalacturonase	AT2G41850.1	polygalacturonase abscission zone A. thaliana 	LOC_Os07g10680.1	"polygalacturonase, putative"	Medtr2g071100.1	"Pectolytic enzyme, Pectin lyase fold "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.27447.1.A1_at	A	A1TS	POPTR_0011s06800	POPTR_0011s06800 (11)	scaffold_11:7471151-7471724(-) (11)	NA	Q9ZV88	BES1/BZR1 homolog protein 4	AT1G78700.1	BES1/BZR1 homolog 4 	LOC_Os06g35900.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr2g091180.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27452.1.S1_a_at	A	A1TS	POPTR_0014s13350	POPTR_0014s13350 (11)	scaffold_14:9827096-9827723(+) (11)	NA	NA	NA	AT2G48070.2	resistance to phytophthora 1 	LOC_Os05g33520.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27479.1.S1_at	A	A1TS	POPTR_0008s11390	POPTR_0008s11390 (11)	scaffold_8:7241056-7241337(+) (11)	NA	Q8ND56	Protein LSM14 homolog A	AT1G26110.1	decapping 5 	LOC_Os01g02090.1	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27479.2.A1_at	A	A1TS	POPTR_0010s14130	POPTR_0010s14130 (11)	scaffold_10:13819728-13820396(-) (11)	NA	Q8ND56	Protein LSM14 homolog A	AT1G26110.1	decapping 5 	LOC_Os06g30060.2	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2748.1.A1_at	A	A1TS	POPTR_0006s18600	POPTR_0006s18600 (11)	scaffold_6:17148006-17149069(-) (11)	NA	NA	NA	AT1G07210.1	Ribosomal protein S18 	LOC_Os10g35690.1	"ribosomal protein S18 containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.275.1.S1_at	A	A1TS	POPTR_0005s21540	POPTR_0005s21540 (11)	scaffold_5:20672356-20672915(+) (11)	POPTR_0002s06750 (6)	NA	NA	AT1G43580.1	Sphingomyelin synthetase family protein 	LOC_Os04g34620.1	expressed protein	Medtr1g125060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2752.1.S1_at	A	A1TS	POPTR_0001s06220	POPTR_0001s06220 (10)	scaffold_1:4803776-4804270(+) (10)	NA	Q9ZVJ6	Annexin D4	AT2G38750.1	annexin 4 	LOC_Os05g31750.1	"annexin, putative, expressed"	Medtr8g039890.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.2753.1.S1_at	A	A1TS	POPTR_0003s10190	POPTR_0003s10190 (11)	scaffold_3:11281375-11282310(+) (11)	NA	Q39290	"DNA-directed RNA polymerases I, II, and III subunit RPABC5"	AT1G61700.1	RNA polymerases N / 8 kDa subunit 	LOC_Os11g08940.1	"RNA polymerases N 8 kDa subunit, putative"	Medtr5g035350.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006351|""transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.27553.1.S1_at	A	A1TS	POPTR_0017s11730	POPTR_0017s11730 (11)	scaffold_17:11493934-11494722(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2759.3.A1_a_at	A	A1TA	POPTR_0010s11030	POPTR_0010s11030 (10)	scaffold_10:11417712-11418382(+) (10)//scaffold_1646:3293-3963(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27609.1.A1_at	A	A1TS	POPTR_0008s04380	POPTR_0008s04380 (11)	scaffold_8:2459378-2460573(+) (11)	NA	NA	NA	AT5G51960.1	CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g03920.1	expressed protein	Medtr6g084010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27616.1.S1_at	A	A1TS	POPTR_0005s26550	POPTR_0005s26550 (11)	scaffold_5:24517529-24517989(-) (11)	NA	Q9LNU3	Expansin-A11	AT1G20190.1	expansin 11 	LOC_Os04g15840.1	"expansin precursor, putative, expressed"	Medtr4g111750.1	"Major pollen allergen Lol pI; Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27644.1.S1_at	A	A1TS	POPTR_0009s08600	POPTR_0009s08600 (11)	scaffold_9:7821485-7822890(+) (11)	NA	Q9M2Y6	Uncharacterized protein At3g49720	AT3G49720.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g05070.1	expressed protein	Medtr2g010600.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.27652.1.S1_at	A	A1TS	POPTR_0001s15990	POPTR_0001s15990 (11)	scaffold_1:12824742-12825252(-) (11)	NA	O49432	Polygalacturonase QRT3	AT4G20050.2	Pectin lyase-like superfamily protein 	LOC_Os04g52320.1	"QRT3, putative, expressed"	Medtr4g089990.1	Parallel beta-helix repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27674.1.S1_at	A	A1TS	POPTR_0010s22450	POPTR_0010s22450 (11)	scaffold_10:19361484-19363136(-) (11)	NA	NA	NA	AT2G35830.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35810.1). 	LOC_Os01g61670.1	"ureidoglycolate hydrolase, putative, expressed"	Medtr1g121950.1	"Ureidoglycolate hydrolase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27678.1.S1_a_at	A	A1TS	POPTR_0013s15740	POPTR_0013s15740 (11)	scaffold_13:15641502-15641536(+) (11)	NA	Q8K2U2	Probable alpha-ketoglutarate-dependent dioxygenase ABH6	AT4G20350.2	oxidoreductases 	LOC_Os10g28410.1	"GA19388-PA, putative, expressed"	Medtr6g070830.1	"Alkylated DNA repair protein alkB homolog 6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27678.1.S1_s_at	A	A1TS	POPTR_0013s15740	POPTR_0013s15740 (11)	scaffold_13:15641875-15642227(+) (11)	NA	Q8K2U2	Probable alpha-ketoglutarate-dependent dioxygenase ABH6	AT4G20350.2	oxidoreductases 	LOC_Os10g28410.1	"GA19388-PA, putative, expressed"	Medtr6g070830.1	"Alkylated DNA repair protein alkB homolog 6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27678.2.A1_at	A	A1MS	POPTR_0013s15740	POPTR_0013s15740 (11)	scaffold_13:15641712-15641877(+) (11)	NA	Q8K2U2	Probable alpha-ketoglutarate-dependent dioxygenase ABH6	AT4G20350.2	oxidoreductases 	LOC_Os10g28410.1	"GA19388-PA, putative, expressed"	Medtr6g070830.1	"Alkylated DNA repair protein alkB homolog 6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27678.3.A1_at	A	A1MS	POPTR_0013s15740	POPTR_0013s15740 (9)	scaffold_13:15641936-15642257(+) (9)	NA	Q8K2U2	Probable alpha-ketoglutarate-dependent dioxygenase ABH6	AT4G20350.2	oxidoreductases 	LOC_Os10g28410.1	"GA19388-PA, putative, expressed"	Medtr6g070830.1	"Alkylated DNA repair protein alkB homolog 6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2768.1.S1_at	A	A1TS	POPTR_0012s09560	POPTR_0012s09560 (11)	scaffold_12:10540804-10541210(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27692.1.A1_at	A	A1TS	POPTR_0016s01310	POPTR_0016s01310 (11)	scaffold_16:521326-521617(-) (11)//scaffold_16:580789-581070(+) (11)	NA	Q9FGK3	Putative MO25-like protein At5g47540	AT5G47540.1	Mo25 family protein 	LOC_Os07g39630.1	"calcium-binding protein, putative, expressed"	Medtr2g030130.1	Mo25-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27692.3.A1_a_at	A	A1TS	POPTR_0006s01590	POPTR_0006s01590 (11)	scaffold_6:962541-965476(+) (11)	NA	Q9FGK3	Putative MO25-like protein At5g47540	AT5G47540.1	Mo25 family protein 	LOC_Os07g39630.1	"calcium-binding protein, putative, expressed"	Medtr2g030130.1	Mo25-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.277.1.S1_a_at	A	A1TS	POPTR_0015s04870	POPTR_0015s04870 (11)	scaffold_15:5081253-5081496(-) (11)	POPTR_0012s04230 (8)	Q8VWG7	TPR repeat-containing thioredoxin TDX	AT3G17880.2	tetraticopeptide domain-containing thioredoxin 	LOC_Os09g23650.1	"FAM10 family protein, putative, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.277.2.S1_at	A	A1TS	POPTR_0015s04870	POPTR_0015s04870 (10)	scaffold_15:5081054-5081390(-) (10)	NA	Q8VWG7	TPR repeat-containing thioredoxin TDX	AT3G17880.2	tetraticopeptide domain-containing thioredoxin 	LOC_Os09g23650.1	"FAM10 family protein, putative, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.27718.1.S1_s_at	A	A1TS	POPTR_0005s28040	POPTR_0005s28040 (11)	scaffold_5:25439991-25440184(+) (11)	NA	NA	NA	AT1G21000.2	PLATZ transcription factor family protein 	LOC_Os06g41930.2	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.27718.2.S1_at	A	A1TS	POPTR_0005s28040	POPTR_0005s28040 (11)	scaffold_5:25438615-25438697(+) (11)//scaffold_91:15374-15456(-) (11)	NA	NA	NA	AT1G21000.2	PLATZ transcription factor family protein 	LOC_Os06g41930.2	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.27718.3.A1_at	A	A1TS	POPTR_0002s00430	POPTR_0002s00430 (11)	scaffold_2:148314-148853(-) (11)	NA	NA	NA	AT1G21000.2	PLATZ transcription factor family protein 	LOC_Os06g41930.2	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.2772.1.S1_at	A	A1TS	POPTR_0012s05470	POPTR_0012s05470 (11)	scaffold_12:5127631-5127670(+) (11)	NA	P49592	Protein Dr1 homolog	AT5G23090.1	"nuclear factor Y, subunit B13 "	LOC_Os08g29500.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g115740.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.2772.2.S1_at	A	A1MS	POPTR_0015s06290	POPTR_0015s06290 (9)	scaffold_15:6802048-6804339(+) (9)	NA	P49592	Protein Dr1 homolog	AT5G23090.1	"nuclear factor Y, subunit B13 "	LOC_Os08g29500.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g115740.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.2772.3.S1_at	A	A1TS	POPTR_0011s09250	POPTR_0011s09250 (11)	scaffold_11:11448712-11451690(-) (11)	NA	NA	NA	AT2G34680.1	Outer arm dynein light chain 1 protein 	LOC_Os07g05470.1	"AIR9 protein, putative, expressed"	Medtr2g055450.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.27720.1.S1_at	A	A1TS	POPTR_0019s01770	POPTR_0019s01770 (11)	scaffold_19:1535901-1536299(-) (11)	POPTR_0019s01780 (7)	Q9F131	3-hydroxybenzoate 6-hydroxylase 1	AT5G05320.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g05920.1	expressed protein	Medtr5g013370.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27728.2.A1_s_at	A	A1TS	POPTR_0001s16350	POPTR_0001s16350 (11)	scaffold_1:13135122-13135714(-) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT3G14270.1	phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os08g34950.1	"chaperonin Cpn60/TCP-1, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.27740.1.S1_at	A	A1MA	POPTR_0004s02520	POPTR_0004s02520 (9)	scaffold_4:1663003-1664660(-) (9)	POPTR_0004s01260 (7)//POPTR_1704s00210 (6)	Q9LDQ3	Putative cysteine-rich receptor-like protein kinase 35	AT4G11530.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 34 	LOC_Os06g30130.2	"cysteine-rich receptor-like protein kinase 10 precursor, putative, expressed"	AC235009_56.1	Tyrosine protein kinase AC235009.1 241618-238414 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27742.1.S1_x_at	A	A1TS	POPTR_0016s12090	POPTR_0016s12090 (9)	scaffold_16:11352877-11354567(-) (9)	NA	Q8L9T7	Histidine-containing phosphotransfer protein 5	AT1G03430.1	histidine-containing phosphotransfer factor 5 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr1g111080.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.27742.2.S1_at	A	A1TS	POPTR_0006s09930	POPTR_0006s09930 (11)	scaffold_6:7359487-7361483(-) (11)	NA	Q8L9T7	Histidine-containing phosphotransfer protein 5	AT1G03430.1	histidine-containing phosphotransfer factor 5 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr1g111080.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.27742.3.A1_at	A	A1TS	POPTR_0003s02900	POPTR_0003s02900 (11)	scaffold_3:3059985-3060501(-) (11)	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.1	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os02g13110.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27749.1.S1_at	A	A1TS	POPTR_0009s12370	POPTR_0009s12370 (11)	scaffold_9:10110889-10111222(+) (11)	NA	Q9NW13	RNA-binding protein 28	AT2G21440.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g58720.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g093820.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.27757.1.S1_at	A	A1TS	POPTR_0005s03840	POPTR_0005s03840 (10)	scaffold_5:2547902-2548383(-) (10)	NA	NA	NA	AT5G19090.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.2779.3.A1_at	A	A1TS	POPTR_0009s17020	POPTR_0009s17020 (11)	scaffold_9:12830791-12831523(-) (11)	NA	NA	NA	AT2G17350.1	unknown protein; Has 119 Blast hits to 93 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 18; Fungi - 12; Plants - 44; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). 	LOC_Os09g31466.1	expressed protein	Medtr8g073350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.278.1.A1_at	A	A1TS	POPTR_0003s01390	POPTR_0003s01390 (9)	scaffold_3:1221745-1221988(+) (9)	NA	NA	NA	AT5G24690.1	Protein of unknown function (DUF3411) 	LOC_Os12g18630.1	expressed protein	Medtr2g095320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.278.3.S1_s_at	A	A1TS	POPTR_0001s21800	POPTR_0001s21800 (11)	scaffold_1:20301695-20301930(-) (11)	NA	NA	NA	AT5G24690.1	Protein of unknown function (DUF3411) 	LOC_Os12g18630.1	expressed protein	Medtr2g095320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27802.1.S1_at	A	A1MS	POPTR_0009s05620	POPTR_0009s05620 (11)	scaffold_9:5679132-5679619(+) (11)	NA	Q56YN3	NAD(H) kinase 1	AT3G21070.2	NAD kinase 1 	LOC_Os01g72690.1	"NAD kinase, putative, expressed"	Medtr4g104490.1	ATP-NAD/AcoX kinase 	GO:0008152|metabolic process	GO:0003951|NAD+ kinase activity	NA
PtpAffx.27811.1.S1_at	A	A1TS	POPTR_0005s10200	POPTR_0005s10200 (11)	scaffold_5:7291640-7292178(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27835.1.S1_at	A	A1TS	POPTR_0006s09800	POPTR_0006s09800 (11)	scaffold_6:7205443-7205906(-) (11)	NA	NA	NA	AT3G09050.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 120 Blast hits to 120 proteins in 47 species: Archae - 4; Bacteria - 10; Metazoa - 33; Fungi - 2; Plants - 44; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). "	LOC_Os01g63410.1	expressed protein	Medtr4g012360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2784.1.A1_at	A	A1TS	POPTR_0015s09780	POPTR_0015s09780 (10)	scaffold_15:10907261-10907845(+) (10)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os01g68060.1	"copine, putative, expressed"	Medtr6g022780.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27845.1.A1_s_at	A	A1TS	POPTR_0017s06430	POPTR_0017s06430 (11)	scaffold_17:4931926-4932361(+) (11)	NA	NA	NA	AT2G43210.2	Ubiquitin-like superfamily protein 	LOC_Os11g18880.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27853.1.S1_at	A	A1TS	POPTR_0003s15740	POPTR_0003s15740 (11)	scaffold_3:15459844-15462023(+) (11)	NA	Q02370	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	AT5G47890.1	"NADH-ubiquinone oxidoreductase B8 subunit, putative "	LOC_Os04g24520.1	"ribosomal protein L51, putative, expressed"	Medtr2g038400.1	Mitochondrial ribosome 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27868.1.S1_a_at	A	A1MS	POPTR_0008s15840	POPTR_0008s15840 (11)	scaffold_8:10555541-10555588(+) (11)	NA	Q7RZD3	Serine/threonine-protein kinase ste-20	AT1G04210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g53250.1	expressed protein	Medtr2g017390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.27878.2.S1_a_at	A	A2TS	POPTR_0007s01400	POPTR_0007s01400 (11)//POPTR_0017s04860 (11)	scaffold_17:3742100-3742391(-) (11)//scaffold_7:789027-789312(-) (11)	NA	Q9SGP6	Glutaredoxin-C9	AT1G28480.1	Thioredoxin superfamily protein 	LOC_Os01g47760.1	"OsGrx_I1 - glutaredoxin subgroup III, expressed"	Medtr4g108920.1	"Monothiol glutaredoxin-S5, related "	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.27878.3.A1_a_at	A	A1TS	POPTR_0017s04860	POPTR_0017s04860 (11)	scaffold_17:3741993-3742515(-) (11)	NA	Q9SGP6	Glutaredoxin-C9	AT1G28480.1	Thioredoxin superfamily protein 	LOC_Os01g13950.1	"OsGrx_A1 - glutaredoxin subgroup III, expressed"	Medtr4g108920.1	"Monothiol glutaredoxin-S5, related "	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.2788.1.A1_a_at	A	A2TS	POPTR_0004s18340	POPTR_0009s13950 (11)//POPTR_0004s18340 (11)	scaffold_4:18278420-18278454(+) (11)//scaffold_9:11034951-11034985(+) (11)	NA	Q5PNS9	Probable protein phosphatase 2C 64	AT4G38520.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2788.1.A1_at	A	A1TS	POPTR_0009s13950	POPTR_0009s13950 (11)	scaffold_9:11034668-11035029(+) (11)	NA	Q5PNS9	Probable protein phosphatase 2C 64	AT4G38520.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2788.2.S1_a_at	A	A1TS	POPTR_0004s18340	POPTR_0004s18340 (11)	scaffold_4:18277063-18278355(+) (11)	NA	Q5PNS9	Probable protein phosphatase 2C 64	AT4G38520.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2788.3.S1_a_at	A	A1TS	POPTR_0004s18340	POPTR_0004s18340 (11)	scaffold_4:18274023-18274794(+) (11)	NA	Q5PNS9	Probable protein phosphatase 2C 64	AT4G38520.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2788.4.A1_a_at	A	A1TS	POPTR_0004s18340	POPTR_0004s18340 (11)	scaffold_4:18277063-18278418(+) (11)	NA	Q5PNS9	Probable protein phosphatase 2C 64	AT4G38520.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27882.1.S1_at	A	A2TS	POPTR_0004s10810	POPTR_0105s00210 (10)//POPTR_0004s10810 (10)	scaffold_105:20586-20890(+) (10)//scaffold_4:9366822-9367126(+) (10)	NA	NA	NA	AT4G31730.1	glutamine dumper 1 	LOC_Os08g34700.1	"GDU1, putative, expressed"	Medtr3g138690.1	GDU1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27897.1.A1_at	A	A1TS	POPTR_0005s17390	POPTR_0005s17390 (11)	scaffold_5:14730254-14730747(-) (11)	NA	Q940J1	Homeobox-leucine zipper protein ATHB-16	AT4G40060.1	homeobox protein 16 	LOC_Os09g29460.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g110250.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.27905.1.S1_at	A	A1TS	POPTR_0008s04470	POPTR_0008s04470 (11)	scaffold_8:2515803-2516353(-) (11)	NA	Q9M1E2	Nitrate excretion transporter 1	AT3G45650.1	nitrate excretion transporter1 	LOC_Os05g27304.1	"peptide transporter PTR2, putative, expressed"	Medtr2g111450.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.2791.1.A1_at	A	A1TS	POPTR_0013s01230	POPTR_0013s01230 (11)	scaffold_13:677838-678231(+) (11)	NA	P49204	40S ribosomal protein S4-2	AT5G07090.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	GO:0003723|RNA binding	NA
PtpAffx.2791.3.S1_at	A	A1TS	POPTR_0015s05120	POPTR_0015s05120 (10)	scaffold_15:5432613-5432720(-) (10)	NA	P46300	40S ribosomal protein S4	AT5G07090.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	GO:0003723|RNA binding	NA
PtpAffx.27919.2.S1_a_at	A	A1TS	POPTR_0001s07390	POPTR_0001s07390 (11)	scaffold_1:5565575-5565963(+) (11)	POPTR_0003s18740 (6)	Q9C5P4	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3"	AT1G73100.1	SU(VAR)3-9 homolog 3 	LOC_Os11g38900.1	"histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed"	Medtr7g105180.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.2792.1.S1_at	A	A1TS	POPTR_0001s17520	POPTR_0001s17520 (11)	scaffold_1:14311990-14312283(+) (11)	NA	O24381	Plastidic ATP/ADP-transporter	AT1G80300.1	nucleotide transporter 1 	LOC_Os02g11740.1	"plastidic ATP/ADP-transporter, putative, expressed"	Medtr2g123610.1	ADP/ATP carrier protein 	GO:0006810|transport	GO:0005524|ATP binding||GO:0005471|ATP:ADP antiporter activity	GO:0016021|integral to membrane
PtpAffx.27926.1.S1_a_at	A	A1TS	POPTR_0010s10130	POPTR_0010s10130 (11)	scaffold_10:10708423-10708707(+) (11)	NA	Q4WVW4	Vacuolar protein 8	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.27927.1.S1_s_at	A	A1TS	POPTR_0019s14860	POPTR_0019s14860 (11)	scaffold_19:15512719-15513249(-) (11)	NA	O22932	CBL-interacting serine/threonine-protein kinase 11	AT2G30360.1	SOS3-interacting protein 4 	LOC_Os05g43840.1	"CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g082950.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.27960.1.S1_at	A	A1TS	POPTR_0008s13080	POPTR_0008s13080 (11)	scaffold_8:8529589-8530266(+) (11)	NA	NA	NA	AT1G70780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g21925.1	expressed protein	Medtr1g034970.1	"Senescence-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27963.1.S1_at	A	A1TS	POPTR_0012s10180	POPTR_0012s10180 (11)	scaffold_12:11008825-11009151(+) (11)	NA	NA	NA	AT3G48660.1	Protein of unknown function (DUF 3339) 	LOC_Os02g30470.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27985.1.S1_at	A	A1TS	POPTR_0014s08130	POPTR_0014s08130 (11)	scaffold_14:6043900-6045653(+) (11)	NA	Q5XF03	Probable glycerol-3-phosphate acyltransferase 8	AT4G00400.1	glycerol-3-phosphate acyltransferase 8 	LOC_Os01g63580.1	"glycerol-3-phosphate acyltransferase, putative, expressed"	Medtr8g031940.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.28014.1.A1_a_at	A	A1TS	POPTR_0008s01080	POPTR_0008s01080 (11)	scaffold_8:509413-509653(+) (11)	NA	NA	NA	AT1G10865.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 241 Blast hits to 241 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants - 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os09g34310.3	expressed protein	Medtr2g092090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28014.2.A1_at	A	A1MS	POPTR_0008s01080	POPTR_0008s01080 (9)	scaffold_8:509186-509392(+) (9)	NA	NA	NA	AT1G10865.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 241 Blast hits to 241 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants - 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os09g34310.3	expressed protein	Medtr2g092090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28023.1.S1_at	A	A1TS	POPTR_0001s22570	POPTR_0001s22570 (9)	scaffold_1:21481008-21481498(+) (11)	NA	Q0WPH8	Serine/threonine-protein kinase Nek5	AT3G44200.1	"NIMA (never in mitosis, gene A)-related 6 "	LOC_Os01g64490.1	"protein kinase domain containing protein, expressed"	Medtr2g105340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.28027.1.S1_s_at	A	A1TS	POPTR_0014s07130	POPTR_0014s07130 (11)	scaffold_14:5388831-5389876(-) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.28027.2.S1_s_at	A	A1TS	POPTR_0014s07130	POPTR_0014s07130 (11)	scaffold_14:5390282-5391903(-) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.28058.1.S1_at	A	A1MS	POPTR_0001s30470	POPTR_0001s30470 (9)	scaffold_1:28931863-28932328(-) (9)//scaffold_850:14-529(-) (9)	NA	NA	NA	AT3G19540.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28061.1.S1_s_at	A	A1TS	POPTR_0013s06110	POPTR_0013s06110 (11)	scaffold_13:4526422-4526671(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT1G58030.1	cationic amino acid transporter 2 	LOC_Os12g42850.1	"amino acid permease, putative, expressed"	Medtr7g103380.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.28069.1.S1_at	A	A1TS	POPTR_0005s15850	POPTR_0005s15850 (11)	scaffold_5:12484045-12484396(-) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT1G77660.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os09g28060.1	"MORN repeat domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28083.1.S1_at	A	A1TS	POPTR_0011s00650	POPTR_0011s00650 (11)	scaffold_11:326917-327687(+) (11)	NA	P35055	"Coproporphyrinogen-III oxidase, chloroplastic"	AT1G03475.1	Coproporphyrinogen III oxidase 	LOC_Os04g52130.1	"coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed"	Medtr5g106440.1	Coproporphyrinogen III oxidase 	GO:0006779|porphyrin biosynthetic process||GO:0055114|oxidation reduction	GO:0004109|coproporphyrinogen oxidase activity	NA
PtpAffx.28096.1.S1_s_at	A	A1TS	POPTR_0002s03520	POPTR_0002s03520 (11)	scaffold_2:2184655-2184720(-) (11)	NA	NA	NA	AT1G75310.1	auxin-like 1 protein 	LOC_Os01g44310.2	"dnaJ domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28099.1.S1_at	A	A1TS	POPTR_0006s25120	POPTR_0006s25120 (11)	scaffold_6:23573685-23574305(+) (11)	NA	Q53YF3	Signal peptidase complex subunit 3B	AT5G27430.1	Signal peptidase subunit 	LOC_Os09g38370.1	"signal peptidase complex subunit 3, putative, expressed"	Medtr7g139490.1	Signal peptidase 22 kDa subunit 	GO:0044260|cellular macromolecule metabolic process||GO:0006508|proteolysis||GO:0006465|signal peptide processing	GO:0008233|peptidase activity	GO:0005787|signal peptidase complex||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.28100.1.S1_at	A	A1TS	POPTR_0009s03030	POPTR_0009s03030 (11)	scaffold_9:3756522-3757326(+) (11)	NA	P54697	Myosin-J heavy chain	AT2G31900.1	myosin-like protein XIF 	LOC_Os03g53660.1	"Myosin head domain containing protein, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.28101.1.A1_at	A	A1MS	POPTR_0011s09730	POPTR_0011s09730 (10)	scaffold_11:12122993-12123337(+) (10)	NA	NA	NA	AT4G21740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g129680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28103.1.S1_at	A	A1TS	POPTR_0002s03640	POPTR_0002s03640 (11)	scaffold_2:2254257-2255949(+) (11)	NA	NA	NA	AT1G75250.2	RAD-like 6 	LOC_Os01g44390.2	"MYB family transcription factor, putative, expressed"	Medtr3g162290.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28120.1.S1_at	A	A1TS	POPTR_0010s22210	POPTR_0010s22210 (11)	scaffold_10:19199752-19201603(+) (11)	NA	Q6ZT07	TBC1 domain family member 9	AT3G55020.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g61860.1	"TBC domain containing protein, expressed"	Medtr1g146610.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.28128.1.S1_at	A	A1TS	POPTR_0002s09780	POPTR_0002s09780 (11)	scaffold_2:7010433-7011666(-) (11)	NA	Q9SA00	5'-adenylylsulfate reductase-like 4	AT1G34780.1	APR-like 4 	LOC_Os02g51850.1	"OsAPRL3  adenosine 5'-phosphosulfate reductase-like OsAPRL3, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28131.1.A1_s_at	A	A1TS	POPTR_0011s12030	POPTR_0011s12030 (11)	scaffold_11:14809892-14810204(-) (11)	NA	Q9EPI0	Xylosyltransferase 2	AT3G15350.2	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g10440.1	"xylosyltransferase, putative, expressed"	Medtr2g100560.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.28135.1.S1_at	A	A1TS	POPTR_0008s15600	POPTR_0008s15600 (11)	scaffold_8:10379852-10380731(-) (11)	POPTR_0010s09340 (6)	NA	NA	AT3G22790.1	Kinase interacting (KIP1-like) family protein 	LOC_Os10g28610.1	"KIP1, putative, expressed"	Medtr5g006650.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28137.1.S1_at	A	A1TS	POPTR_0004s10650	POPTR_0004s10650 (11)	scaffold_4:9168634-9169857(+) (11)	NA	Q96CN4	EVI5-like protein	AT5G15930.1	plant adhesion molecule 1 	LOC_Os08g31840.3	"TBC domain containing protein, expressed"	Medtr5g105820.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.2814.1.A1_at	A	A1TS	POPTR_0011s03980	POPTR_0011s03980 (11)	scaffold_11:4050686-4051190(+) (11)	NA	Q6NUH3	Nitric oxide synthase-interacting protein	AT1G61620.1	phosphoinositide binding 	LOC_Os03g17170.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2814.2.A1_at	A	A2TS	POPTR_0004s02590	POPTR_1093s00200 (11)//POPTR_0004s02590 (11)	scaffold_1093:830-1206(-) (11)//scaffold_4:1725177-1725554(-) (11)	NA	Q6NUH3	Nitric oxide synthase-interacting protein	AT1G61620.1	phosphoinositide binding 	LOC_Os03g17170.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2819.1.S1_at	A	A1TS	POPTR_0003s09180	POPTR_0003s09180 (9)	scaffold_3:10514214-10515317(-) (10)	NA	NA	NA	AT5G46700.1	Tetraspanin family protein 	LOC_Os03g01012.1	"tetraspanin family protein, putative, expressed"	Medtr8g078110.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.2819.2.S1_at	A	A1TS	POPTR_0001s02380	POPTR_0001s02380 (11)	scaffold_1:1795929-1797197(+) (11)	NA	NA	NA	AT5G46700.1	Tetraspanin family protein 	LOC_Os03g01012.1	"tetraspanin family protein, putative, expressed"	Medtr8g078110.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.282.1.S1_at	A	A1TS	POPTR_0009s14670	POPTR_0009s14670 (11)	scaffold_9:11437870-11438727(+) (11)	NA	P52917	Vacuolar protein sorting-associated protein 4	AT2G27600.1	AAA-type ATPase family protein 	LOC_Os01g04814.1	"vacuolar protein sorting-associating protein 4B, putative, expressed"	Medtr4g069940.1	"AAA ATPase, central region; MIT "	NA	GO:0005524|ATP binding	NA
PtpAffx.282.2.S1_a_at	A	A2TS	POPTR_0004s19530	POPTR_0004s19530 (11)//POPTR_0009s14670 (11)	scaffold_4:19342899-19343604(+) (11)//scaffold_9:11437709-11438409(+) (11)	NA	P52917	Vacuolar protein sorting-associated protein 4	AT2G27600.1	AAA-type ATPase family protein 	LOC_Os01g04814.1	"vacuolar protein sorting-associating protein 4B, putative, expressed"	Medtr4g069940.1	"AAA ATPase, central region; MIT "	NA	GO:0005524|ATP binding	NA
PtpAffx.282.2.S1_at	A	A1TS	POPTR_0004s19530	POPTR_0004s19530 (11)	scaffold_4:19343112-19343892(+) (11)	NA	P52917	Vacuolar protein sorting-associated protein 4	AT2G27600.1	AAA-type ATPase family protein 	LOC_Os01g04814.1	"vacuolar protein sorting-associating protein 4B, putative, expressed"	Medtr4g069940.1	"AAA ATPase, central region; MIT "	NA	GO:0005524|ATP binding	NA
PtpAffx.28224.4.A1_at	A	A1MA	POPTR_0003s07110	POPTR_0003s07110 (11)	scaffold_3:8710729-8711272(-) (11)	NA	NA	NA	AT1G17270.1	O-fucosyltransferase family protein 	LOC_Os07g38490.1	"GDP-fucose protein-O-fucosyltransferase 2, putative, expressed"	Medtr8g026980.1	"GDP-fucose protein-O-fucosyltransferase 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28224.5.S1_a_at	A	A1TS	POPTR_0003s07110	POPTR_0003s07110 (11)	scaffold_3:8714343-8714824(+) (11)	NA	NA	NA	AT1G17270.1	O-fucosyltransferase family protein 	LOC_Os07g38490.1	"GDP-fucose protein-O-fucosyltransferase 2, putative, expressed"	Medtr8g026980.1	"GDP-fucose protein-O-fucosyltransferase 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28227.1.S1_at	A	A1TS	POPTR_0001s47550	POPTR_0001s47550 (11)	scaffold_1:47702193-47702460(+) (11)	NA	B3GS44	GPI-anchored protein LORELEI	AT5G56170.1	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 	LOC_Os02g48980.1	"GPI-anchored protein, putative, expressed"	Medtr3g016820.1	"GPI-anchored protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28229.1.S1_at	A	A1TS	POPTR_0004s06180	POPTR_0004s06180 (9)	scaffold_4:4910690-4911169(+) (9)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.28247.1.A1_at	A	A1TS	POPTR_0003s17520	POPTR_0003s17520 (10)	scaffold_3:16864779-16865299(+) (10)	NA	Q7UJ69	Dihydroxy-acid dehydratase	AT3G23940.1	dehydratase family 	LOC_Os08g44530.1	"dihydroxy-acid dehydratase, putative, expressed"	Medtr2g103180.1	Dihydroxy-acid and 6-phosphogluconate dehydratase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.28269.1.S1_at	A	A1TS	POPTR_0014s02900	POPTR_0014s02900 (11)	scaffold_14:2383973-2384469(+) (11)	NA	NA	NA	AT5G42900.3	cold regulated gene 27 	NA	NA	Medtr1g024320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.283.1.A1_x_at	A	A1TS	POPTR_0006s13900	POPTR_0006s13900 (11)	scaffold_6:11092177-11092915(+) (11)	NA	P13708	Sucrose synthase	AT3G43190.1	sucrose synthase 4 	LOC_Os06g09450.7	"sucrose synthase, putative, expressed"	Medtr8g133160.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.283.10.A1_s_at	A	A1TS	POPTR_0003s15580	POPTR_0003s15580 (11)	scaffold_3:15332535-15332761(+) (11)	NA	Q0JPA6	Salt stress root protein RS1	AT4G20260.3	plasma-membrane associated cation-binding protein 1 	LOC_Os02g18410.1	"salt stress root protein RS1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.283.14.A1_x_at	A	A1TS	POPTR_0006s13900	POPTR_0006s13900 (11)	scaffold_6:11092227-11092915(+) (11)	NA	P13708	Sucrose synthase	AT3G43190.1	sucrose synthase 4 	LOC_Os06g09450.7	"sucrose synthase, putative, expressed"	Medtr8g133160.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.283.15.S1_at	A	A1TS	POPTR_0006s27500	POPTR_0006s27500 (11)	scaffold_6:25386464-25387674(+) (11)	NA	NA	NA	AT5G25265.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g08180.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.283.16.S1_s_at	A	A2TS	POPTR_0006s27500	POPTR_0018s02160 (11)//POPTR_0006s27500 (11)	scaffold_18:1920883-1921496(+) (11)//scaffold_6:25385601-25386235(+) (11)	NA	NA	NA	AT5G25265.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g08180.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.283.20.S1_a_at	A	A2TS	POPTR_0012s02250	POPTR_0012s02250 (11)//POPTR_0015s01530 (11)	scaffold_12:1880094-1881359(-) (11)//scaffold_15:955861-957133(+) (11)	NA	Q9STN8	E3 ubiquitin-protein ligase SINAT4	AT4G27880.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os02g19140.1	"seven in absentia protein family domain containing protein, expressed"	Medtr1g009230.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.283.20.S1_at	A	A1TS	POPTR_0015s01530	POPTR_0015s01530 (11)	scaffold_15:955729-956022(+) (11)	NA	Q9STN8	E3 ubiquitin-protein ligase SINAT4	AT4G27880.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os02g19140.1	"seven in absentia protein family domain containing protein, expressed"	Medtr1g009230.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.283.22.A1_at	A	A1MS	POPTR_0005s07340	POPTR_0005s07340 (11)	scaffold_5:5013204-5013319(+) (11)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.283.5.A1_x_at	A	A1TS	POPTR_0006s13900	POPTR_0006s13900 (9)	scaffold_6:11092331-11092607(+) (9)	NA	P13708	Sucrose synthase	AT3G43190.1	sucrose synthase 4 	LOC_Os06g09450.7	"sucrose synthase, putative, expressed"	Medtr8g133160.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.283.6.S1_a_at	A	A1TS	POPTR_0012s02250	POPTR_0012s02250 (11)	scaffold_12:1878435-1878660(-) (11)	NA	Q9STN8	E3 ubiquitin-protein ligase SINAT4	AT4G27880.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os02g19140.1	"seven in absentia protein family domain containing protein, expressed"	Medtr1g009230.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.28304.1.S1_at	A	A1TS	POPTR_0001s13860	POPTR_0001s13860 (11)	scaffold_1:10925807-10926270(+) (11)	NA	Q9C7F7	Uncharacterized GPI-anchored protein At1g27950	AT1G27950.1	glycosylphosphatidylinositol-anchored lipid protein transfer 1 	LOC_Os08g42040.2	"LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g103940.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28314.1.S1_at	A	A1TS	POPTR_0007s01990	POPTR_0007s01990 (11)	scaffold_7:1134525-1135330(-) (11)	NA	Q9LX30	Probable serine/threonine-protein kinase GCN2	AT3G59410.1	protein kinase family protein 	LOC_Os04g41510.1	"serine/threonine-protein kinase GCN2, putative, expressed"	AC233109_16.1	Protein kinase AC233109.4 62891-57719 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.28315.1.A1_at	A	A1TS	POPTR_0016s07500	POPTR_0016s07500 (11)	scaffold_16:5376849-5381709(+) (11)	NA	Q851L5	IAA-amino acid hydrolase ILR1-like 3	AT3G02875.1	Peptidase M20/M25/M40 family protein 	LOC_Os03g62060.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.2832.1.A1_at	A	A1TS	POPTR_0001s36320	POPTR_0001s36320 (11)	scaffold_1:34866615-34867132(+) (11)	NA	Q6GNY1	E3 ubiquitin-protein ligase mib1	AT3G01750.1	Ankyrin repeat family protein 	LOC_Os05g23320.2	expressed protein	Medtr3g103280.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28339.1.S1_at	A	A1TS	POPTR_0009s13150	POPTR_0009s13150 (10)	scaffold_9:10542314-10543624(-) (10)	NA	Q09473	Putative ER lumen protein retaining receptor C28H8.4	AT2G21190.1	ER lumen protein retaining receptor family protein 	LOC_Os08g43470.1	"ER lumen protein retaining receptor, putative, expressed"	Medtr3g156420.1	ER lumen protein retaining receptor; Orn/DAP/Arg decarboxylase 2 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
PtpAffx.28344.1.S1_at	A	A1TS	POPTR_0001s44680	POPTR_0001s44680 (10)	scaffold_1:45127334-45127657(+) (10)	NA	NA	NA	AT3G47860.1	chloroplastic lipocalin 	LOC_Os04g53490.1	"OsCHL  Chloroplastic lipocalin, expressed"	Medtr5g099410.1	Lipocalin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2836.2.S1_a_at	A	A1TS	POPTR_0015s09150	POPTR_0015s09150 (11)	scaffold_15:10449859-10450037(-) (11)	NA	Q9Y5Z4	Heme-binding protein 2	AT1G17100.1	SOUL heme-binding family protein 	LOC_Os01g13420.1	"SOUL heme-binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28375.1.S1_at	A	A1MS	POPTR_0002s05380	POPTR_0002s05380 (11)	scaffold_2:3512285-3512816(+) (11)	NA	Q9LE82	RAN GTPase-activating protein 1	AT3G63130.2	RAN GTPase activating protein 1 	LOC_Os05g46560.2	"RAN GTPase-activating protein 1, putative, expressed"	Medtr1g086410.1	"Leucine-rich repeat; Leucine-rich repeat, ribonuclease inhibitor subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.28382.1.S1_at	A	A1TS	POPTR_0015s01000	POPTR_0015s01000 (11)	scaffold_15:579786-579900(-) (11)	NA	P40934	Cytochrome b5	AT5G53560.1	cytochrome B5 isoform E 	LOC_Os10g37420.2	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g123330.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.28390.1.S1_s_at	A	A1TS	POPTR_0010s20290	POPTR_0010s20290 (11)	scaffold_10:17939105-17939458(-) (11)	NA	Q9FIA0	Cytokinin-N-glucosyltransferase 2	AT3G55700.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g60960.1	"cytokinin-N-glucosyltransferase 1, putative, expressed"	Medtr3g092660.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28393.1.S1_at	A	A1TS	POPTR_0012s11970	POPTR_0012s11970 (11)	scaffold_12:12310304-12310617(-) (11)	NA	NA	NA	AT5G45100.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os03g46570.1	"protein binding protein, putative, expressed"	Medtr2g034400.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.284.1.A1_at	A	A1TS	POPTR_0002s06230	POPTR_0002s06230 (11)	scaffold_2:4172522-4173048(+) (11)	NA	O94298	Uncharacterized hydroxylase C887.15c	AT1G14290.1	sphingoid base hydroxylase 2 	LOC_Os07g43460.1	"sphingolipid C4-hydroxylase SUR2, putative, expressed"	Medtr5g043740.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.284.2.A1_at	A	A1TS	POPTR_0005s22170	POPTR_0005s22170 (10)	scaffold_5:21118819-21120962(-) (10)	NA	O94298	Uncharacterized hydroxylase C887.15c	AT1G69640.1	sphingoid base hydroxylase 1 	LOC_Os07g43460.1	"sphingolipid C4-hydroxylase SUR2, putative, expressed"	Medtr5g043740.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.28421.1.S1_at	A	A1TS	POPTR_0006s29000	POPTR_0006s29000 (11)	scaffold_6:26504382-26504751(-) (11)	NA	Q8LAZ7	COP9 signalosome complex subunit 5b	AT1G22920.1	COP9 signalosome 5A 	LOC_Os04g56070.1	"COP9 signalosome complex subunit 5b, putative, expressed"	Medtr3g133410.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28422.1.A1_at	A	A1TS	POPTR_0016s04150	POPTR_0016s04150 (11)	scaffold_16:2371448-2372112(+) (11)	NA	P45951	Apurinic endonuclease-redox protein	AT2G41460.1	apurinic endonuclease-redox protein 	LOC_Os01g58680.1	"apurinic endonuclease-redox protein, putative, expressed"	AC235753_14.2	N-6 Adenine-specific DNA methylase; Exodeoxyribonuclease III xth AC235753.1 83675-77442 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.28425.1.S1_a_at	A	A2TS	POPTR_0002s26430	POPTR_0014s17900 (11)//POPTR_0002s26430 (11)	scaffold_14:14436623-14436914(-) (11)//scaffold_2:23415672-23415964(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.28425.1.S1_at	A	A1TS	POPTR_0002s26430	POPTR_0002s26430 (11)	scaffold_2:23415804-23416908(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.28425.2.S1_at	A	A1MS	POPTR_0014s17900	POPTR_0014s17900 (11)	scaffold_14:14436029-14436587(-) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.28432.1.S1_at	A	A1TS	POPTR_0006s17850	POPTR_0006s17850 (11)	scaffold_6:16066297-16067813(+) (11)	NA	Q9SP35	Mitochondrial import inner membrane translocase subunit Tim17	AT2G37410.2	translocase inner membrane subunit 17-2 	LOC_Os07g41330.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.28451.3.S1_s_at	A	A1TS	POPTR_0002s01490	POPTR_0002s01490 (11)	scaffold_2:797293-797428(+) (11)	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G42220.1	Ubiquitin-like superfamily protein 	LOC_Os07g31540.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28451.4.A1_at	A	A1TS	POPTR_0009s08350	POPTR_0009s08350 (10)	scaffold_9:7670217-7670474(-) (10)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT5G10550.1	global transcription factor group E2 	LOC_Os04g53170.1	"bromodomain containing protein, expressed"	Medtr4g121780.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28465.1.A1_at	A	A1TS	POPTR_0004s22900	POPTR_0004s22900 (11)	scaffold_4:21735872-21737625(-) (11)	NA	Q8W3M6	Ubiquitin-like domain-containing CTD phosphatase	AT4G06599.1	ubiquitin family protein 	LOC_Os01g65450.2	"ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed"	Medtr4g137220.1	Ubiquitin; NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2848.1.S1_a_at	A	A2TS	POPTR_0006s09920	POPTR_0016s12070 (9)//POPTR_0006s09920 (9)	scaffold_16:11340351-11340385(-) (9)//scaffold_6:7348539-7348573(-) (9)	NA	Q41870	Aquaporin PIP1-1	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os07g26640.1	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.2848.1.S1_at	A	A1TS	POPTR_0006s09920	POPTR_0006s09920 (11)	scaffold_6:7348041-7348513(-) (11)	NA	Q41870	Aquaporin PIP1-1	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os07g26640.1	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.28480.1.S1_at	A	A1TS	POPTR_0010s17530	POPTR_0010s17530 (9)	scaffold_10:16092782-16093208(+) (9)	NA	Q9S746	Protein HOTHEAD	AT1G14185.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os02g45530.1	"HOTHEAD precursor, putative, expressed"	Medtr5g044590.1	GMC oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.28482.1.S1_s_at	A	A1TS	POPTR_0022s00550	POPTR_0022s00550 (11)	scaffold_22:229811-230003(+) (11)	NA	NA	NA	AT4G24290.2	MAC/Perforin domain-containing protein 	LOC_Os07g07194.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr2g005520.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28488.1.S1_s_at	A	A1TS	POPTR_0014s08310	POPTR_0014s08310 (11)	scaffold_14:6177489-6177564(+) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT4G00330.1	calmodulin-binding receptor-like cytoplasmic kinase 2 	LOC_Os03g05470.1	"tyrosine protein kinase domain containing protein, putative, expressed"	AC235567_9.1	"Serine/threonine protein kinase, active site AC235567.1 39723-36116 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.28498.1.S1_at	A	A1TS	POPTR_0001s12520	POPTR_0001s12520 (11)	scaffold_1:9716177-9716799(+) (11)	NA	NA	NA	AT5G11680.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WW-domain-binding protein (InterPro:IPR018826); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os09g33800.1	"arabinogalactan protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.285.1.S1_at	A	A1TS	POPTR_0002s00490	POPTR_0002s00490 (11)	scaffold_2:194210-195152(+) (11)	NA	Q41140	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha	AT1G20950.1	Phosphofructokinase family protein 	LOC_Os06g22060.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed"	Medtr1g039920.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28501.2.S1_a_at	A	A1TS	POPTR_0019s08420	POPTR_0019s08420 (11)	scaffold_19:9948129-9948912(-) (11)	POPTR_0583s00200 (6)	NA	NA	AT3G56290.1	unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g60830.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28507.1.S1_at	A	A1TS	POPTR_0006s29220	POPTR_0006s29220 (9)	scaffold_6:26665890-26666411(+) (9)	NA	NA	NA	AT2G19260.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g34720.2	"PHD-finger domain containing protein, putative, expressed"	Medtr3g149370.1	"Zinc finger, FYVE/PHD-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.2851.1.A1_at	A	A1TS	POPTR_0007s11440	POPTR_0007s11440 (10)	scaffold_7:11794953-11795402(-) (10)	NA	Q5HC84	50S ribosomal protein L25	AT5G66860.1	"Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain "	LOC_Os03g41612.1	"ribosomal protein L25, putative, expressed"	Medtr8g096920.1	Ribosomal protein L25 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28528.1.S1_a_at	A	A1TS	POPTR_0001s25840	POPTR_0001s25840 (11)	scaffold_1:24917352-24918905(+) (11)	NA	Q5M823	NudC domain-containing protein 2	AT5G58740.1	HSP20-like chaperones superfamily protein 	LOC_Os01g47770.1	"CS domain containing protein, putative, expressed"	Medtr1g009280.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28532.1.S1_at	A	A1TS	POPTR_0010s01570	POPTR_0010s01570 (11)	scaffold_10:1786650-1786799(+) (11)	NA	Q39659	Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a	AT3G06860.1	multifunctional protein 2 	LOC_Os01g24680.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr8g138540.1	3-hydroxyacyl-CoA dehydrogenase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.28535.1.S1_at	A	A1TS	POPTR_0019s11610	POPTR_0019s11610 (9)	scaffold_19:12874007-12874529(-) (9)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr1g125840.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.28560.1.S1_at	A	A1TS	POPTR_0013s00260	POPTR_0013s00260 (11)	scaffold_13:44827-45446(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28572.2.S1_at	A	A1TS	POPTR_0001s03890	POPTR_0001s03890 (11)	scaffold_1:3121905-3122341(-) (11)	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT5G56350.1	Pyruvate kinase family protein 	LOC_Os01g16960.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.28573.1.S1_at	A	A1TS	POPTR_0011s05570	POPTR_0011s05570 (11)	scaffold_11:5533319-5533648(+) (11)	NA	Q94ID6	Ethylene-responsive transcription factor 12	AT1G28360.1	ERF domain protein 12 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr2g017810.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.2859.1.A1_at	A	A1TS	POPTR_0004s20620	POPTR_0004s20620 (11)	scaffold_4:20087567-20088463(-) (11)	NA	Q5ZJK8	T-complex protein 1 subunit eta	AT3G11830.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g47320.1	"T-complex protein, putative, expressed"	Medtr5g094680.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.28591.1.A1_a_at	A	A1TS	POPTR_0019s12050	POPTR_0019s12050 (11)	scaffold_19:13194333-13194442(-) (11)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G06230.3	global transcription factor group E4 	LOC_Os02g15220.2	"bromodomain containing protein, expressed"	Medtr4g109460.1	Bromodomain; Protein of unknown function GLTT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28591.1.A1_at	A	A1TS	POPTR_0019s12050	POPTR_0019s12050 (11)	scaffold_19:13194213-13196775(-) (11)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G06230.3	global transcription factor group E4 	LOC_Os02g15220.2	"bromodomain containing protein, expressed"	Medtr4g109460.1	Bromodomain; Protein of unknown function GLTT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28591.2.A1_a_at	A	A1TS	POPTR_0019s12050	POPTR_0019s12050 (11)	scaffold_19:13198495-13198847(-) (11)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G06230.3	global transcription factor group E4 	LOC_Os02g15220.2	"bromodomain containing protein, expressed"	Medtr4g109460.1	Bromodomain; Protein of unknown function GLTT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28595.2.A1_a_at	A	A1TS	POPTR_0007s13950	POPTR_0007s13950 (11)	scaffold_7:13937564-13939715(+) (11)	NA	NA	NA	AT5G66290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g51700.1	expressed protein	Medtr5g021690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28615.1.S1_at	A	A1TS	POPTR_0002s18020	POPTR_0002s18020 (10)	scaffold_2:13911242-13911629(+) (10)	NA	Q1XDM0	Pyruvate dehydrogenase E1 component subunit alpha	AT1G01090.1	pyruvate dehydrogenase E1 alpha 	LOC_Os04g02900.1	"dehydrogenase E1 component domain containing protein, expressed"	Medtr8g074090.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.28620.1.S1_at	A	A1TS	POPTR_0004s12200	POPTR_0004s12200 (11)	scaffold_4:11183339-11183862(-) (11)	NA	Q9C554	Expansin-A1	AT1G69530.2	expansin A1 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr7g010300.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28625.1.S1_at	A	A1TS	POPTR_0010s09340	POPTR_0010s09340 (11)	scaffold_10:10205236-10205611(+) (11)	NA	NA	NA	AT3G22790.1	Kinase interacting (KIP1-like) family protein 	LOC_Os03g06510.1	"KIP1, putative, expressed"	Medtr5g006650.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2864.1.S1_a_at	A	A2TS	POPTR_0001s14430	POPTR_0003s17620 (11)//POPTR_0001s14430 (11)	scaffold_1:11313037-11313380(-) (11)//scaffold_3:16926271-16926643(-) (11)	NA	Q9MAS5	Putative vesicle-associated membrane protein 726	AT1G04760.1	vesicle-associated membrane protein 726 	LOC_Os07g09600.1	"vesicle-associated membrane protein, putative, expressed"	Medtr4g023810.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.2864.1.S1_at	A	A1TS	POPTR_0001s14430	POPTR_0001s14430 (11)	scaffold_1:11312624-11313005(-) (11)	NA	Q9MAS5	Putative vesicle-associated membrane protein 726	AT1G04760.1	vesicle-associated membrane protein 726 	LOC_Os07g09600.1	"vesicle-associated membrane protein, putative, expressed"	Medtr4g023810.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.2864.2.S1_at	A	A1TS	POPTR_0003s17620	POPTR_0003s17620 (10)	scaffold_3:16926002-16926167(-) (10)	NA	Q9MAS5	Putative vesicle-associated membrane protein 726	AT1G04760.1	vesicle-associated membrane protein 726 	LOC_Os07g09600.1	"vesicle-associated membrane protein, putative, expressed"	Medtr4g023810.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.28667.1.S1_at	A	A1TS	POPTR_0007s10420	POPTR_0007s10420 (11)	scaffold_7:10357452-10358211(-) (11)	NA	NA	NA	AT4G37300.1	maternal effect embryo arrest 59 	LOC_Os05g37830.1	expressed protein	Medtr5g016400.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28677.1.S1_at	A	A1TS	POPTR_0005s25250	POPTR_0005s25250 (11)	scaffold_5:23563753-23563845(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G27620.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g28474.1	"transferase family protein, putative, expressed"	Medtr3g094520.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.28680.1.A1_s_at	A	A1TS	POPTR_0002s11110	POPTR_0002s11110 (11)	scaffold_2:8138858-8139468(+) (11)	NA	Q8GY23	E3 ubiquitin-protein ligase UPL1	AT1G55860.1	ubiquitin-protein ligase 1 	LOC_Os12g24080.1	"HECT-domain domain containing protein, expressed"	Medtr5g075640.1	"HECT; Ubiquitin interacting motif; UBA-like; DUF913, E3 ubiquitin ligase TOM1; "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.28691.1.A1_a_at	A	A1TS	POPTR_0001s24380	POPTR_0001s24380 (11)	scaffold_1:23671884-23672272(-) (11)	NA	Q91XL3	UDP-glucuronic acid decarboxylase 1	AT3G46440.2	UDP-XYL synthase 5 	LOC_Os03g16980.2	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr2g114640.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.28694.1.S1_at	A	A1TS	POPTR_0003s17190	POPTR_0003s17190 (10)	scaffold_3:16628922-16632353(+) (10)	NA	P92792	Mitochondrial import receptor subunit TOM20	AT1G27390.1	translocase outer membrane 20-2 	LOC_Os01g69250.1	"mitochondrial import receptor subunit TOM20, putative, expressed"	Medtr3g103730.1	Plant specific mitochondrial import receptor subunit TOM20 	GO:0061024|membrane organization||GO:0045040|protein import into mitochondrial outer membrane	GO:0005515|protein binding	GO:0005742|mitochondrial outer membrane translocase complex
PtpAffx.28694.2.S1_at	A	A1TS	POPTR_0001s13980	POPTR_0001s13980 (11)	scaffold_1:11008988-11009239(+) (11)//scaffold_456:13377-13628(-) (9)	NA	P92792	Mitochondrial import receptor subunit TOM20	AT1G27390.1	translocase outer membrane 20-2 	LOC_Os01g69250.1	"mitochondrial import receptor subunit TOM20, putative, expressed"	Medtr3g103730.1	Plant specific mitochondrial import receptor subunit TOM20 	GO:0061024|membrane organization||GO:0045040|protein import into mitochondrial outer membrane	GO:0005515|protein binding	GO:0005742|mitochondrial outer membrane translocase complex
PtpAffx.28701.1.S1_at	A	A1TS	POPTR_0006s10050	POPTR_0006s10050 (10)	scaffold_6:7461197-7461451(-) (10)	NA	NA	NA	AT5G01520.1	RING/U-box superfamily protein 	LOC_Os07g46700.3	"zinc finger, RING-type, putative, expressed"	Medtr4g013020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28701.2.S1_s_at	A	A2TS	POPTR_0006s10050	POPTR_0006s10050 (11)//POPTR_0016s12270 (11)	scaffold_16:11613947-11613985(-) (11)//scaffold_6:7462997-7463035(-) (11)	NA	NA	NA	AT5G01520.1	RING/U-box superfamily protein 	LOC_Os07g46700.3	"zinc finger, RING-type, putative, expressed"	Medtr4g013020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28703.1.A1_at	A	A1TS	POPTR_0012s03630	POPTR_0012s03630 (11)	scaffold_12:2846642-2846980(+) (11)	NA	Q10251	Eukaryotic translation initiation factor 5B	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein 	LOC_Os05g51500.1	"eukaryotic translation initiation factor 5B, putative, expressed"	Medtr1g125430.1	Small GTP-binding protein domain; Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.28706.1.S1_at	A	A1TS	POPTR_0001s16230	POPTR_0001s16230 (9)	scaffold_1:13032471-13032822(-) (9)	NA	Q9FK29	Probable ubiquitin-conjugating enzyme E2 33	AT5G50430.2	ubiquitin-conjugating enzyme 33 	LOC_Os06g09330.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g026810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.28711.1.S1_at	A	A1TS	POPTR_0013s12290	POPTR_0013s12290 (11)	scaffold_13:12888915-12890195(+) (11)	NA	NA	NA	AT2G42570.1	TRICHOME BIREFRINGENCE-LIKE 39 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr4g109510.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28713.1.A1_at	A	A1TS	POPTR_0006s01330	POPTR_0006s01330 (9)	scaffold_6:771480-771822(-) (9)	NA	Q9SU29	E3 ubiquitin-protein ligase UPL5	AT4G12570.1	ubiquitin protein ligase 5 	LOC_Os09g31090.2	"HECT-domain domain containing protein, expressed"	Medtr8g147800.1	HECT; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.2874.1.S1_s_at	A	A1TS	POPTR_0014s08450	POPTR_0014s08450 (11)	scaffold_14:6279425-6280244(-) (11)	NA	Q39024	Mitogen-activated protein kinase 4	AT4G01370.1	MAP kinase 4 	LOC_Os10g38950.1	"CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g088400.1	Serine/threonine protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.28757.1.S1_at	A	A1TS	POPTR_0015s04390	POPTR_0015s04390 (11)	scaffold_15:4528316-4528352(+) (11)	NA	NA	NA	AT1G48620.1	high mobility group A5 	LOC_Os05g51850.1	"AT hook-containing DNA-binding protein, putative, expressed"	Medtr4g155220.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.2876.2.S1_a_at	A	A1TS	POPTR_0014s03180	POPTR_0014s03180 (11)	scaffold_14:2556936-2557247(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g024820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28766.1.S1_at	A	A1TS	POPTR_0010s00730	POPTR_0010s00730 (10)	scaffold_10:428718-429009(+) (10)	NA	Q8GUG7	DEAD-box ATP-dependent RNA helicase 50	AT3G06980.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g01830.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g163690.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.2877.1.S1_at	A	A1TS	POPTR_0018s12810	POPTR_0018s12810 (10)	scaffold_18:13341919-13342287(+) (10)	NA	Q27GK7	Topless-related protein 4	AT3G15880.1	WUS-interacting protein 2 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr8g121060.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2877.3.S1_s_at	A	A1TS	POPTR_0006s06570	POPTR_0006s06570 (11)	scaffold_6:4777053-4777722(+) (11)	NA	Q27GK7	Topless-related protein 4	AT3G15880.1	WUS-interacting protein 2 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr8g121060.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28783.1.S1_s_at	A	A1TS	POPTR_0001s20720	POPTR_0001s20720 (11)	scaffold_1:18826440-18827796(-) (11)	NA	Q94IA6	3-epi-6-deoxocathasterone 23-monooxygenase	AT3G13730.1	"cytochrome P450, family 90, subfamily D, polypeptide 1 "	LOC_Os01g10040.1	"cytochrome P450, putative, expressed"	Medtr5g089930.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.28796.1.S1_a_at	A	A1TS	POPTR_0016s13640	POPTR_0016s13640 (11)	scaffold_16:12804910-12805101(-) (11)	NA	NA	NA	AT5G05360.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g27660.1	expressed protein	Medtr7g077160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28796.1.S1_at	A	A1TS	POPTR_0016s13640	POPTR_0016s13640 (11)	scaffold_16:12802938-12805395(-) (11)	NA	NA	NA	AT5G05360.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g27660.1	expressed protein	Medtr7g077160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28796.2.S1_at	A	A1MS	POPTR_0016s13640	POPTR_0016s13640 (10)	scaffold_16:12804172-12804555(-) (10)	NA	NA	NA	AT5G05360.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g27660.1	expressed protein	Medtr7g077160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.288.1.A1_s_at	A	A1TS	POPTR_0016s08520	POPTR_0016s08520 (11)	scaffold_16:6331190-6331964(+) (11)	NA	Q9SF40	60S ribosomal protein L4-1	AT3G09630.1	Ribosomal protein L4/L1 family 	LOC_Os07g08330.1	"ribosomal protein L4, putative, expressed"	Medtr1g065440.1	"Ribosomal protein L4/L1e, archeabacterial like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.28801.1.S1_at	A	A1TS	POPTR_0001s09970	POPTR_0001s09970 (11)	scaffold_1:7719288-7719818(+) (11)	NA	Q948U0	Respiratory burst oxidase homolog protein A	AT1G64060.1	respiratory burst oxidase protein F 	LOC_Os05g45210.3	"respiratory burst oxidase, putative, expressed"	Medtr1g099800.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.28802.1.S1_at	A	A1TS	POPTR_0005s06860	POPTR_0005s06860 (11)	scaffold_5:4608297-4609946(+) (11)	NA	NA	NA	AT5G62950.3	"RNA polymerase II, Rpb4, core protein "	LOC_Os12g30510.1	"DNA-directed RNA polymerase III subunit RPC9, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.28813.1.S1_at	A	A1TS	POPTR_0017s12230	POPTR_0017s12230 (10)	scaffold_17:12434302-12434782(+) (10)	NA	Q8GWP0	Transcription factor MYB39	AT5G15310.1	myb domain protein 16 	LOC_Os08g33660.1	"MYB family transcription factor, putative, expressed"	Medtr6g013190.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28816.2.A1_a_at	A	A1TS	POPTR_0001s34890	POPTR_0001s34890 (11)	scaffold_1:33116993-33119195(+) (11)	NA	NA	NA	AT5G14710.1	CONTAINS InterPro DOMAIN/s: Proteasome assembly chaperone 3 (InterPro:IPR018788); Has 120 Blast hits to 120 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os10g25600.1	expressed protein	Medtr3g100620.1	"Unknown, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28825.1.S1_at	A	A1TS	POPTR_0005s01600	POPTR_0005s01600 (11)	scaffold_5:1051259-1051786(+) (11)	NA	Q5EA50	Rab9 effector protein with kelch motifs	AT1G74150.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28827.1.S1_at	A	A1TS	POPTR_0014s15570	POPTR_0014s15570 (11)	scaffold_14:11592006-11592357(+) (11)	NA	NA	NA	AT5G55140.1	ribosomal protein L30 family protein 	LOC_Os08g01859.1	"ribosomal protein L30 containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.28832.1.S1_at	A	A1MS	POPTR_0016s00680	POPTR_0016s00680 (11)	scaffold_16:238814-239282(+) (11)	NA	Q75DK1	SEC14 cytosolic factor	AT5G47730.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g10650.1	"CRAL/TRIO domain containing protein, expressed"	Medtr2g032790.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28838.1.A1_at	A	A1TS	POPTR_0008s10960	POPTR_0008s10960 (11)	scaffold_8:6900991-6902310(+) (11)	NA	Q9LEY9	H/ACA ribonucleoprotein complex subunit 2-like protein	AT5G08180.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os02g49610.1	"ribosomal protein L7Ae, putative, expressed"	Medtr8g115430.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28847.1.A1_at	A	A1TS	POPTR_0018s03610	POPTR_0018s03610 (11)	scaffold_18:3111367-3111899(+) (11)	NA	P36525	"54S ribosomal protein L24, mitochondrial"	AT4G31460.1	Ribosomal L28 family 	LOC_Os07g36090.3	"ribosomal protein L28 protein, putative, expressed"	Medtr1g008550.1	Ribosomal protein L28 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.2885.1.S1_at	A	A1TS	POPTR_0018s02780	POPTR_0018s02780 (11)	scaffold_18:2462241-2464475(-) (11)	NA	Q6GR43	Transmembrane protein 85	AT5G10780.1	"CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g24580.1	"transmembrane protein 85, putative, expressed"	Medtr1g016570.1	Protein of unknown function DUF1077 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2885.2.S1_at	A	A1TS	POPTR_0006s28210	POPTR_0006s28210 (10)	scaffold_6:25976029-25976172(-) (10)	NA	Q6GR43	Transmembrane protein 85	AT5G10780.1	"CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g24580.1	"transmembrane protein 85, putative, expressed"	Medtr1g016570.1	Protein of unknown function DUF1077 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28853.1.A1_at	A	A1TS	POPTR_0015s09530	POPTR_0015s09530 (11)	scaffold_15:10732513-10734268(+) (11)	NA	Q9UTE6	Protein mak16	AT1G23280.1	MAK16 protein-related 	LOC_Os07g16950.5	"Mak16 protein domain containing protein, expressed"	Medtr2g126220.1	Mak16 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28858.1.S1_s_at	A	A1TS	POPTR_0009s00930	POPTR_0009s00930 (11)	scaffold_9:1069447-1074858(+) (11)	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G27980.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28873.1.S1_at	A	A1MS	POPTR_0009s02410	POPTR_0009s02410 (10)	scaffold_9:3164545-3165058(-) (10)	NA	Q9FMR5	Vesicle-associated membrane protein 714	AT5G22360.1	vesicle-associated membrane protein 714 	LOC_Os10g06540.1	"vesicle-associated membrane protein, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.28876.1.S1_at	A	A1TS	POPTR_0008s11260	POPTR_0008s11260 (11)	scaffold_8:7126165-7126724(+) (11)	NA	P24068	Ocs element-binding factor 1	AT3G30530.1	basic leucine-zipper 42 	LOC_Os02g49560.1	"bZIP transcription factor domain containing protein, expressed"	AC146721_11.1	"bZIP transcription factor, bZIP_1 AC146721.7 56450-55611 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.2889.2.S1_s_at	A	A1TS	POPTR_0019s07790	POPTR_0019s07790 (11)	scaffold_19:8948551-8949763(+) (11)	NA	NA	NA	AT4G17900.1	PLATZ transcription factor family protein 	LOC_Os04g50120.1	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28893.1.A1_at	A	A1TS	POPTR_0001s45690	POPTR_0001s45690 (9)	scaffold_1:46254590-46255041(+) (9)	NA	Q9SV68	"Putative quinone-oxidoreductase homolog, chloroplastic"	AT4G13010.1	"Oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os04g30420.1	"dehydrogenase, putative, expressed"	Medtr4g042660.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.28898.1.S1_a_at	A	A1TS	POPTR_0001s41700	POPTR_0001s41700 (11)	scaffold_1:41404267-41404301(-) (11)	NA	NA	NA	AT3G13677.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g38500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28898.1.S1_at	A	A1TS	POPTR_0001s41700	POPTR_0001s41700 (11)	scaffold_1:41403275-41403320(-) (11)	NA	NA	NA	AT3G13677.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g38500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28898.1.S1_s_at	A	A1TS	POPTR_0001s41700	POPTR_0001s41700 (11)	scaffold_1:41403113-41404281(-) (11)	NA	NA	NA	AT3G13677.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g38500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.289.1.S1_at	A	A1TS	POPTR_0017s14410	POPTR_0017s14410 (9)	scaffold_17:14476688-14477152(+) (11)	NA	Q96502	Zinc finger protein CONSTANS-LIKE 2	AT3G02380.1	CONSTANS-like 2 	LOC_Os06g16370.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr1g016230.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.28909.1.S1_at	A	A1TS	POPTR_0019s09950	POPTR_0019s09950 (11)	scaffold_19:11580136-11581223(-) (11)	NA	Q93ZR6	O-acyltransferase WSD1	AT5G53390.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os05g48260.1	"wax synthase, putative, expressed"	Medtr1g009270.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28910.1.S1_at	A	A1TS	POPTR_0014s03480	POPTR_0014s03480 (10)	scaffold_14:2793254-2793762(-) (10)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT5G66850.1	mitogen-activated protein kinase kinase kinase 5 	LOC_Os03g55560.2	"STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g148390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.28913.1.S1_at	A	A1TS	POPTR_0009s01330	POPTR_0009s01330 (11)	scaffold_9:1600827-1601053(-) (11)	NA	Q58CR4	Dolichol kinase	AT3G45040.1	phosphatidate cytidylyltransferase family protein 	LOC_Os02g05320.1	"phosphatidate cytidylyltransferase family protein, putative, expressed"	AC235487_14.1	Phosphatidate cytidylyltransferase AC235487.1 82252-74788 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28916.1.S1_at	A	A1TS	POPTR_0019s03460	POPTR_0019s03460 (10)	scaffold_19:3531426-3532254(-) (10)	NA	Q9QXN3	Activating signal cointegrator 1	AT2G20410.1	RNA-binding ASCH domain protein 	LOC_Os03g64250.4	expressed protein	Medtr1g093490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2892.2.S1_a_at	A	A2TS	POPTR_0006s18000	POPTR_0006s18000 (10)//POPTR_0018s09810 (10)	scaffold_18:10880975-10881046(+) (10)//scaffold_6:16341874-16341945(+) (10)	NA	Q94BT6	Adagio protein 1	AT5G57360.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os06g47890.2	"OsFBO9 - F-box and other domain containing protein, expressed"	Medtr2g041400.1	"PAS; Speract/scavenger receptor; Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2892.2.S1_at	A	A1TS	POPTR_0018s09810	POPTR_0018s09810 (11)	scaffold_18:10881043-10881451(+) (11)	NA	Q94BT6	Adagio protein 1	AT5G57360.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os06g47890.2	"OsFBO9 - F-box and other domain containing protein, expressed"	Medtr2g041400.1	"PAS; Speract/scavenger receptor; Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2892.3.A1_a_at	A	A1TS	POPTR_0006s18000	POPTR_0006s18000 (11)	scaffold_6:16342057-16342450(+) (11)	NA	Q94BT6	Adagio protein 1	AT5G57360.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os06g47890.2	"OsFBO9 - F-box and other domain containing protein, expressed"	Medtr2g041400.1	"PAS; Speract/scavenger receptor; Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2893.1.S1_at	A	A1TS	POPTR_0009s11250	POPTR_0009s11250 (9)	scaffold_9:9400844-9401134(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr4g093240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28932.1.S1_at	A	A1TS	POPTR_0002s09400	POPTR_0002s09400 (11)	scaffold_2:6691265-6691709(-) (11)	NA	Q55CU8	Random slug protein 5	AT4G08690.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g51610.2	"CRAL/TRIO domain containing protein, expressed"	CU651566_8.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal CU651566.9 36825-34547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28934.1.S1_at	A	A1MS	POPTR_0001s37160	POPTR_0001s37160 (9)	scaffold_1:36022826-36023089(-) (9)	POPTR_0001s37170 (8)	Q9SZ11	Probable glycerophosphoryl diester phosphodiesterase 2	AT4G26690.1	PLC-like phosphodiesterase family protein 	LOC_Os04g39610.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr5g101680.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.28949.1.S1_s_at	A	A1TS	POPTR_0001s20850	POPTR_0001s20850 (11)	scaffold_1:19077216-19078702(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28951.1.S1_at	A	A2TS	POPTR_0006s05920	POPTR_0006s05920 (11)//POPTR_0006s05930 (11)	scaffold_6:4172192-4172517(-) (11)//scaffold_6:4181015-4181340(-) (11)	NA	Q9LMA1	Probable flavin-containing monooxygenase 1	AT1G19250.1	flavin-dependent monooxygenase 1 	LOC_Os09g37620.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr8g132980.1	"Amine oxidase; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28965.1.S1_at	A	A1MS	POPTR_0015s07490	POPTR_0015s07490 (9)	scaffold_15:8764228-8764469(-) (9)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT1G74690.1	IQ-domain 31 	LOC_Os05g45930.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g112590.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28976.1.S1_s_at	A	A1TS	POPTR_0013s15110	POPTR_0013s15110 (11)	scaffold_13:15166791-15167303(+) (11)	NA	Q9LVL5	Probable serine/threonine-protein kinase WNK4	AT5G58350.1	with no lysine (K) kinase 4 	LOC_Os12g02250.1	"STE_PAK_Ste20_Slob_Wnk.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g083060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.2898.1.S1_s_at	A	A1TS	POPTR_0005s10340	POPTR_0005s10340 (11)	scaffold_5:7413473-7414569(+) (11)	NA	P25819	Catalase-2	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
PtpAffx.28982.1.S1_at	A	A1TS	POPTR_0013s07440	POPTR_0013s07440 (11)	scaffold_13:6235258-6235608(-) (11)	NA	Q9ZSK1	"Tocopherol O-methyltransferase, chloroplastic"	AT1G64970.1	gamma-tocopherol methyltransferase 	LOC_Os02g47310.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr3g039530.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.28993.1.S1_s_at	A	A1TS	POPTR_0016s06250	POPTR_0016s06250 (11)	scaffold_16:4199600-4201038(+) (11)	NA	O74835	rRNA biogenesis protein rrp5	AT3G11964.1	RNA binding;RNA binding 	LOC_Os07g10350.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g092300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.29.1.S1_at	A	A1TS	POPTR_0003s09910	POPTR_0003s09910 (11)	scaffold_3:11073603-11075156(+) (11)	NA	NA	NA	AT5G45590.1	Ribosomal protein L35 	LOC_Os10g42860.1	"ribosomal protein L35, putative, expressed"	Medtr5g027640.1	Ribosomal protein L35 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.29000.1.S1_at	A	A1TS	POPTR_0008s08720	POPTR_0008s08720 (10)	scaffold_8:5378473-5378838(-) (10)	NA	Q9SAK5	Myb family transcription factor APL	AT1G69580.2	Homeodomain-like superfamily protein 	LOC_Os03g20900.1	"Myb transcription factor, putative, expressed"	Medtr4g111390.1	"Peptidase M22, glycoprotease; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29009.1.A1_at	A	A1MS	POPTR_0007s11150	POPTR_0007s11150 (11)	scaffold_7:11418642-11419163(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g11030.1	"EF hand family protein, putative, expressed"	Medtr1g024700.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2901.3.S1_at	A	A1TS	POPTR_0002s03130	POPTR_0002s03130 (9)	scaffold_2:1936733-1937038(-) (9)	NA	P36774	Lon protease 2	AT1G75460.1	ATP-dependent protease La (LON) domain protein 	LOC_Os07g32560.1	"ATP-dependent protease, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
PtpAffx.2901.4.S1_a_at	A	A1TS	POPTR_0003s17090	POPTR_0003s17090 (11)	scaffold_3:16560433-16560688(+) (11)	NA	Q9C7F7	Uncharacterized GPI-anchored protein At1g27950	AT1G27950.1	glycosylphosphatidylinositol-anchored lipid protein transfer 1 	LOC_Os08g42040.2	"LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g103940.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29013.1.S1_at	A	A1TS	POPTR_0014s09510	POPTR_0014s09510 (11)	scaffold_14:7059457-7061317(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g104320.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29014.1.A1_s_at	A	A1TS	POPTR_0014s15920	POPTR_0014s15920 (11)	scaffold_14:12003222-12003704(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G35670.1	IQ-domain 33 	LOC_Os06g40850.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr5g092000.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2902.1.S1_at	A	A1TS	POPTR_0002s07020	POPTR_0002s07020 (11)	scaffold_2:4756441-4756813(+) (11)	NA	Q04088	Probable transcription factor PosF21	AT1G43700.1	VIRE2-interacting protein 1 	LOC_Os12g06520.1	"bZIP transcription factor domain containing protein, expressed"	Medtr5g083200.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.29026.1.S1_at	A	A1TS	POPTR_0013s12880	POPTR_0013s12880 (11)	scaffold_13:13505469-13505578(-) (11)	NA	P27054	Endochitinase PR4	AT3G54420.1	homolog of carrot EP3-3 chitinase 	LOC_Os04g41680.1	"CHIT3 - Chitinase family protein precursor, expressed"	Medtr2g120640.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.2903.1.S1_at	A	A1TS	POPTR_0006s28330	POPTR_0006s28330 (11)	scaffold_6:26043149-26043400(+) (11)	NA	Q9C5Z1	Eukaryotic translation initiation factor 3 subunit B	AT5G27640.1	translation initiation factor 3B1 	LOC_Os10g41960.1	"eukaryotic translation initiation factor 3 subunit B, putative, expressed"	Medtr3g138980.1	RNA-binding region RNP-1 (RNA recognition motif); 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.2903.1.S1_s_at	A	A1TS	POPTR_0006s28330	POPTR_0006s28330 (11)	scaffold_6:26043404-26043591(+) (11)	NA	Q9C5Z1	Eukaryotic translation initiation factor 3 subunit B	AT5G27640.1	translation initiation factor 3B1 	LOC_Os10g41960.1	"eukaryotic translation initiation factor 3 subunit B, putative, expressed"	Medtr3g138980.1	RNA-binding region RNP-1 (RNA recognition motif); 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.29030.1.S1_at	A	A1TS	POPTR_0002s02950	POPTR_0002s02950 (10)	scaffold_2:1810205-1810389(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29031.1.A1_at	A	A1TS	POPTR_0011s00870	POPTR_0011s00870 (11)	scaffold_11:443570-444582(-) (11)	NA	Q8GYN5	RPM1-interacting protein 4	AT3G25070.1	RPM1 interacting protein 4 	LOC_Os03g63140.2	"nitrate-induced NOI protein, expressed"	Medtr2g029230.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29035.1.S1_at	A	A1TS	POPTR_0010s20310	POPTR_0010s20310 (11)	scaffold_10:17947737-17948012(-) (11)	NA	NA	NA	AT3G54000.1	CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr5g088680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29045.1.S1_at	A	A1TS	POPTR_0004s24120	POPTR_0004s24120 (9)	scaffold_4:22854223-22855607(-) (9)	NA	P27061	Acid phosphatase 1	AT5G51260.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr8g050090.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.29054.1.A1_at	A	A1TS	POPTR_0015s11500	POPTR_0015s11500 (11)	scaffold_15:12087268-12087605(+) (11)	NA	O15270	Serine palmitoyltransferase 2	AT5G23670.2	long chain base2 	LOC_Os11g31640.1	"serine palmitoyltransferase 2, putative, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.29059.1.A1_at	A	A1TS	POPTR_0007s01440	POPTR_0007s01440 (9)	scaffold_7:815568-815895(-) (9)	NA	NA	NA	AT2G43540.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to 27 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g41800.1	expressed protein	Medtr2g120600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29068.1.S1_at	A	A1TS	POPTR_0013s02790	POPTR_0013s02790 (9)	scaffold_13:1680433-1680971(-) (9)	NA	NA	NA	AT2G32580.1	Protein of unknown function (DUF1068) 	LOC_Os04g42340.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29075.1.S1_s_at	A	A1TS	POPTR_0017s04480	POPTR_0017s04480 (11)	scaffold_17:3451690-3452490(-) (11)	NA	NA	NA	AT1G03780.2	targeting protein for XKLP2 	LOC_Os07g32390.1	"targeting protein-related, putative, expressed"	Medtr4g108340.1	"targeting protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29077.1.A1_s_at	A	A1TS	POPTR_0014s10820	POPTR_0014s10820 (11)	scaffold_14:8087764-8088313(-) (11)	NA	A5DA00	Protein transport protein SEC23	AT4G01810.1	Sec23/Sec24 protein transport family protein 	LOC_Os01g21850.1	"protein transport protein-related, putative, expressed"	Medtr7g134070.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.29085.1.A1_s_at	A	A1TS	POPTR_0019s11670	POPTR_0019s11670 (11)	scaffold_19:12920581-12920617(+) (11)	NA	Q3E7Q9	Probable glycosyltransferase At5g25310	AT1G34270.1	Exostosin family protein 	LOC_Os04g57510.1	"exostosin family domain containing protein, expressed"	Medtr4g107310.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.29090.1.A1_at	A	A1TS	POPTR_0016s07150	POPTR_0016s07150 (10)	scaffold_16:4991981-4992685(+) (11)	NA	Q8CIB9	N-acetyltransferase ESCO2	AT4G31400.1	damaged DNA binding;DNA-directed DNA polymerases 	LOC_Os04g42120.1	"N-acetyltransferase ESCO2, putative, expressed"	Medtr2g123380.1	UMUC-like DNA-repair protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29092.1.A1_at	A	A1TS	POPTR_0015s10850	POPTR_0015s10850 (11)	scaffold_15:11635244-11636611(-) (11)	NA	Q5RC69	Deoxycytidylate deaminase	AT3G48540.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os01g55974.1	"deoxycytidylate deaminase, putative, expressed"	Medtr8g109000.1	"CMP/dCMP deaminase, zinc-binding "	NA	GO:0016787|hydrolase activity||GO:0008270|zinc ion binding	NA
PtpAffx.29093.1.A1_at	A	A1TS	POPTR_0016s00330	POPTR_0016s00330 (11)	scaffold_16:59273-59633(-) (11)	NA	NA	NA	AT3G54780.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os09g12720.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g033390.1	"Zinc finger, RING-type; von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29095.1.A1_at	A	A1TS	POPTR_0010s12430	POPTR_0010s12430 (11)	scaffold_10:12466501-12466895(-) (11)	NA	P08452	Uncharacterized lipoprotein syc1174_c	NA	NA	LOC_Os01g03660.2	"MYB family transcription factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29095.2.S1_at	A	A1MS	POPTR_0010s12430	POPTR_0010s12430 (10)	scaffold_10:12468374-12468535(-) (10)	NA	P08452	Uncharacterized lipoprotein syc1174_c	NA	NA	LOC_Os01g03660.2	"MYB family transcription factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29095.3.A1_a_at	A	A1TS	POPTR_0010s12430	POPTR_0010s12430 (11)	scaffold_10:12466292-12466407(-) (11)	NA	P08452	Uncharacterized lipoprotein syc1174_c	NA	NA	LOC_Os01g03660.2	"MYB family transcription factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29095.3.A1_s_at	A	A1TS	POPTR_0010s12430	POPTR_0010s12430 (11)	scaffold_10:12466931-12467666(-) (11)	NA	P08452	Uncharacterized lipoprotein syc1174_c	NA	NA	LOC_Os01g03660.2	"MYB family transcription factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29098.1.S1_at	A	A1TS	POPTR_0004s22350	POPTR_0004s22350 (11)	scaffold_4:21277982-21278122(+) (11)	NA	Q8T1P1	Uncharacterized protein DDB_G0273453/DDB_G0273565	AT5G60760.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g39870.1	"2-phosphoglycerate kinase-related, putative, expressed"	AC235487_44.1	"2-phosphoglycerate kinase-related, putative AC235487.1 210241-205859 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.291.1.A1_x_at	A	A1TS	POPTR_0006s13310	POPTR_0006s13310 (11)	scaffold_6:10534739-10535237(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.291.11.S1_at	A	A1MS	POPTR_0004s04730	POPTR_0004s04730 (10)	scaffold_4:3492724-3492965(+) (10)	NA	NA	NA	AT1G28380.1	MAC/Perforin domain-containing protein 	LOC_Os05g48360.2	"membrane attack complex component/perforin/complement C9, putative, expressed"	Medtr2g005520.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.291.3.S1_at	A	A1TS	POPTR_0008s04270	POPTR_0008s04270 (11)	scaffold_8:2388002-2388255(-) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.291.7.A1_s_at	A	A1TS	POPTR_0008s04210	POPTR_0008s04210 (11)	scaffold_8:2365295-2365404(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.291.8.S1_s_at	A	A2TS	POPTR_0010s22570	POPTR_0010s22620 (11)//POPTR_0010s22570 (11)	scaffold_10:19440816-19440851(+) (11)//scaffold_10:19455292-19455327(-) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.29105.1.S1_at	A	A1TS	POPTR_0001s29950	POPTR_0001s29950 (11)	scaffold_1:28529607-28530704(-) (11)	NA	NA	NA	AT4G33800.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g005430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29117.1.A1_s_at	A	A1TS	POPTR_0005s26100	POPTR_0005s26100 (11)	scaffold_5:24208128-24209022(+) (11)	NA	NA	NA	AT1G19980.1	cytomatrix protein-related 	LOC_Os04g02680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29119.1.A1_s_at	A	A1TS	POPTR_0015s04900	POPTR_0015s04900 (11)	scaffold_15:5124643-5124879(+) (11)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT3G17850.1	Protein kinase superfamily protein 	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.29119.2.A1_at	A	A1TS	POPTR_0012s04190	POPTR_0012s04190 (10)	scaffold_12:3423902-3424290(-) (11)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT3G17850.1	Protein kinase superfamily protein 	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.29127.1.S1_a_at	A	A1TS	POPTR_0007s10730	POPTR_0007s10730 (11)	scaffold_7:10765667-10765920(-) (11)	NA	O95239	Chromosome-associated kinesin KIF4A	AT5G47820.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g147320.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.29127.1.S1_at	A	A1TS	POPTR_0007s10730	POPTR_0007s10730 (11)	scaffold_7:10765632-10766711(-) (11)	NA	O95239	Chromosome-associated kinesin KIF4A	AT5G47820.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g147320.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.29131.1.S1_a_at	A	A1TS	POPTR_0014s10530	POPTR_0014s10530 (11)	scaffold_14:7841642-7842503(+) (11)	NA	Q9SE96	GEM-like protein 1	AT1G28200.1	FH interacting protein 1 	LOC_Os03g08860.1	"GRAM domain containing protein, expressed"	Medtr2g092150.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29140.1.S1_at	A	A1TS	POPTR_0001s11310	POPTR_0001s11310 (10)	scaffold_1:8754410-8754855(+) (10)	NA	Q6R3L0	Metal-nicotianamine transporter YSL1	AT4G24120.1	YELLOW STRIPE like 1 	LOC_Os04g45860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g123340.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29143.1.S1_at	A	A1MA	POPTR_0001s39560	POPTR_0001s39560 (10)	scaffold_1:38776276-38776748(-) (10)	NA	Q9EQ28	DNA polymerase delta subunit 3	AT1G78650.1	DNA-directed DNA polymerases 	LOC_Os01g10690.1	"POLD3 - Putative DNA polymerase delta complex subunit, expressed"	Medtr2g091630.1	"POLD3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29143.2.A1_s_at	A	A1TS	POPTR_0001s39560	POPTR_0001s39560 (11)	scaffold_1:38775769-38776401(+) (11)	NA	Q9EQ28	DNA polymerase delta subunit 3	AT1G78650.1	DNA-directed DNA polymerases 	LOC_Os01g10690.1	"POLD3 - Putative DNA polymerase delta complex subunit, expressed"	Medtr2g091630.1	"POLD3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29151.1.S1_a_at	A	A1TS	POPTR_0009s10660	POPTR_0009s10660 (11)	scaffold_9:9126794-9127143(+) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT2G03550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.29164.1.S1_at	A	A1TS	POPTR_0017s09010	POPTR_0017s09010 (11)	scaffold_17:7662984-7663274(+) (11)	NA	A4GYP8	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29168.1.S1_s_at	A	A1TS	POPTR_0015s01430	POPTR_0015s01430 (11)	scaffold_15:871728-872280(-) (11)	NA	NA	NA	AT5G53020.1	Ribonuclease P protein subunit P38-related 	LOC_Os01g36970.1	expressed protein	Medtr3g123740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29170.1.S1_at	A	A1TS	POPTR_0006s12920	POPTR_0006s12920 (11)	scaffold_6:10141378-10143563(+) (11)	POPTR_0016s09180 (6)	Q8L8B8	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3	AT2G37210.1	lysine decarboxylase family protein 	LOC_Os02g41770.1	"uncharacterized protein PA4923, putative"	Medtr7g121720.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29180.1.S1_s_at	A	A1TS	POPTR_0001s46690	POPTR_0001s46690 (11)	scaffold_1:47101976-47102248(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G01980.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.29192.1.A1_s_at	A	A1TS	POPTR_0009s15770	POPTR_0009s15770 (11)	scaffold_9:12122016-12122193(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G06570.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g06880.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.29193.1.S1_s_at	A	A1TS	POPTR_0014s16800	POPTR_0014s16800 (11)	scaffold_14:12865461-12866930(+) (11)	NA	Q8GWV5	U-box domain-containing protein 3	AT4G12710.1	ARM repeat superfamily protein 	LOC_Os01g02200.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g077930.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29198.1.S1_at	A	A1TS	POPTR_0007s13440	POPTR_0007s13440 (10)	scaffold_7:13527805-13529750(+) (10)	NA	P53163	"54S ribosomal protein L12, mitochondrial"	AT4G36420.1	Ribosomal protein L12 family protein 	LOC_Os03g52400.1	"ribosomal protein L7/L12 C-terminal domain containing protein, expressed"	Medtr8g092690.1	"Ribosomal protein L7/12, oligomerisation; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.29198.2.S1_a_at	A	A1TS	POPTR_0007s13440	POPTR_0007s13440 (11)	scaffold_7:13527448-13527725(+) (11)	NA	P53163	"54S ribosomal protein L12, mitochondrial"	AT4G36420.1	Ribosomal protein L12 family protein 	LOC_Os03g52400.1	"ribosomal protein L7/L12 C-terminal domain containing protein, expressed"	Medtr8g092690.1	"Ribosomal protein L7/12, oligomerisation; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.29198.2.S1_at	A	A1MS	POPTR_0007s13440	POPTR_0007s13440 (11)	scaffold_7:13527857-13528019(+) (11)	NA	P53163	"54S ribosomal protein L12, mitochondrial"	AT4G36420.1	Ribosomal protein L12 family protein 	LOC_Os03g52400.1	"ribosomal protein L7/L12 C-terminal domain containing protein, expressed"	Medtr8g092690.1	"Ribosomal protein L7/12, oligomerisation; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.29200.1.S1_s_at	A	A1TS	POPTR_0008s08490	POPTR_0008s08490 (11)	scaffold_8:5269742-5270482(+) (11)	NA	Q92804	TATA-binding protein-associated factor 2N	AT1G50300.1	TBP-associated factor 15 	LOC_Os09g12800.1	"zinc finger Ran-binding domain-containing protein 2, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.29222.1.S1_at	A	A1TS	POPTR_0010s16380	POPTR_0010s16380 (11)	scaffold_10:15345658-15348155(-) (11)	NA	Q41276	Floral homeotic protein APETALA 1	AT1G69120.1	K-box region and MADS-box transcription factor family protein  	LOC_Os07g01820.2	"OsMADS15 - MADS-box family gene with MIKCc type-box, expressed"	Medtr8g077590.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.29222.4.S1_a_at	A	A1TS	POPTR_0008s09800	POPTR_0008s09800 (11)	scaffold_8:6076538-6078392(+) (11)	NA	Q41276	Floral homeotic protein APETALA 1	AT1G69120.1	K-box region and MADS-box transcription factor family protein  	LOC_Os03g54160.2	"OsMADS14 - MADS-box family gene with MIKCc type-box, expressed"	Medtr8g077590.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.29242.1.A1_at	A	A1TS	POPTR_0009s02410	POPTR_0009s02410 (11)	scaffold_9:3162844-3164164(-) (11)	NA	Q9FMR5	Vesicle-associated membrane protein 714	AT5G22360.1	vesicle-associated membrane protein 714 	LOC_Os10g06540.1	"vesicle-associated membrane protein, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.29245.1.A1_at	A	A1TS	POPTR_0002s20780	POPTR_0002s20780 (9)	scaffold_2:16876150-16877492(-) (9)	NA	NA	NA	AT1G02910.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g25600.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g130350.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29266.1.S1_at	A	A1TS	POPTR_0010s24420	POPTR_0010s24420 (11)	scaffold_10:20640579-20641607(+) (11)	NA	NA	NA	AT2G36290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g32970.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29266.2.A1_a_at	A	A1TS	POPTR_0008s02230	POPTR_0008s02230 (11)	scaffold_8:1063946-1064391(-) (11)	NA	NA	NA	AT2G36290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g32970.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29280.1.A1_at	A	A1TS	POPTR_0009s04780	POPTR_0009s04780 (11)	scaffold_9:5049794-5050759(+) (11)	NA	Q9KBJ4	Phosphomethylpyrimidine synthase	AT2G29630.3	thiaminC 	LOC_Os03g47610.8	"thiamine biosynthesis protein thiC, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.29280.2.S1_at	A	A1TS	POPTR_0009s04780	POPTR_0009s04780 (10)	scaffold_9:5050809-5050996(+) (11)	NA	Q9KBJ4	Phosphomethylpyrimidine synthase	AT2G29630.3	thiaminC 	LOC_Os03g47610.8	"thiamine biosynthesis protein thiC, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.29280.3.S1_a_at	A	A1TS	POPTR_0009s04780	POPTR_0009s04780 (11)	scaffold_1:24705093-24705237(+) (11)//scaffold_9:5050887-5051030(+) (11)	NA	Q9KBJ4	Phosphomethylpyrimidine synthase	AT2G29630.3	thiaminC 	LOC_Os03g47610.8	"thiamine biosynthesis protein thiC, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.29282.1.A1_a_at	A	A2TS	POPTR_0005s03750	POPTR_0005s03750 (11)//POPTR_0013s02490 (11)	scaffold_13:1472598-1473419(-) (11)//scaffold_5:2497688-2498469(-) (11)	NA	P46086	Mevalonate kinase	AT5G27450.3	mevalonate kinase 	LOC_Os10g18220.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr7g139430.1	Mevalonate kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.29282.1.A1_at	A	A1TS	POPTR_0013s02490	POPTR_0013s02490 (11)	scaffold_13:1472373-1473508(-) (11)	NA	P46086	Mevalonate kinase	AT5G27450.3	mevalonate kinase 	LOC_Os10g18220.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr7g139430.1	Mevalonate kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.29292.1.A1_at	A	A1MS	POPTR_0025s00630	POPTR_0025s00630 (10)	scaffold_25:309741-309892(-) (10)	NA	NA	NA	NA	NA	LOC_Os02g55920.1	expressed protein	Medtr8g121730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29292.1.A1_s_at	A	A1TS	POPTR_0025s00630	POPTR_0025s00630 (11)	scaffold_25:309901-310301(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g55920.1	expressed protein	Medtr8g121730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29298.1.A1_at	A	A1TS	POPTR_0002s23910	POPTR_0002s23910 (11)	scaffold_2:21388693-21389174(-) (11)	NA	NA	NA	AT5G13970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g32580.1	expressed protein	Medtr7g097090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29317.1.A1_at	A	A1TS	POPTR_0001s12800	POPTR_0001s12800 (10)	scaffold_1:9932468-9932747(-) (10)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os12g17880.1	"armadillo/beta-catenin repeat protein-related, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.29323.1.A1_s_at	A	A1TS	POPTR_0008s20730	POPTR_0008s20730 (9)	scaffold_8:14713191-14713287(+) (9)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33400.1	"basic 7S globulin precursor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2933.1.S1_at	A	A1TS	POPTR_0013s02680	POPTR_0013s02680 (10)	scaffold_13:1618121-1618399(+) (10)	NA	Q9C7T4	Transcription factor bHLH96	AT1G72210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g08930.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr1g099080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.29337.1.A1_at	A	A1TS	POPTR_0007s10040	POPTR_0007s10040 (11)	scaffold_7:9725430-9725718(-) (11)	NA	Q43873	Peroxidase 73	AT5G67400.1	root hair specific 19 	LOC_Os07g02440.1	"peroxidase precursor, putative, expressed"	Medtr8g099370.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.29344.1.A1_at	A	A1TS	POPTR_0001s16400	POPTR_0001s16400 (11)	scaffold_1:13188094-13188287(+) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.2	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.2935.1.S1_a_at	A	A1TS	POPTR_0001s20580	POPTR_0001s20580 (11)	scaffold_1:18576645-18577018(-) (11)	NA	O14086	DNA-directed RNA polymerase I subunit rpa49	AT3G13940.1	DNA binding;DNA-directed RNA polymerases 	LOC_Os11g40090.2	"A49-like RNA polymerase I associated factor family protein, expressed"	Medtr2g042600.1	A49-like RNA polymerase I associated factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.2935.2.A1_a_at	A	A1TS	POPTR_0004s02060	POPTR_0004s02060 (11)	scaffold_4:1295714-1295810(-) (11)	NA	O22059	Transcription factor CPC	AT1G01380.1	Homeodomain-like superfamily protein 	LOC_Os01g43180.1	"MYB family transcription factor, putative"	Medtr2g103740.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29354.2.A1_at	A	A1TS	POPTR_0009s08400	POPTR_0009s08400 (11)	scaffold_9:7701758-7702127(-) (11)	NA	Q6GLP4	Protein RMD5 homolog A	AT4G37880.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os06g38940.2	"RMD5 homolog A, putative, expressed"	Medtr2g010250.1	"Zinc finger, RING-type; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29356.1.S1_at	A	A1TS	POPTR_0003s21290	POPTR_0003s21290 (11)	scaffold_3:19511712-19512124(+) (11)	NA	NA	NA	AT1G55280.1	"Lipase/lipooxygenase, PLAT/LH2 family protein "	LOC_Os11g29900.1	expressed protein	Medtr4g133970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29362.2.A1_s_at	A	A1TS	POPTR_0008s06580	POPTR_0008s06580 (11)	scaffold_8:3917379-3917660(-) (11)	NA	Q7XSQ9	Probable aquaporin PIP1-2	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr3g093260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.29379.1.A1_at	A	A1TS	POPTR_0003s08570	POPTR_0003s08570 (11)	scaffold_3:9963458-9963941(+) (11)	NA	NA	NA	AT4G21700.1	Protein of unknown function (DUF2921) 	LOC_Os05g48370.1	expressed protein	Medtr2g017240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29384.1.S1_at	A	A1TS	POPTR_0006s04590	POPTR_0006s04590 (11)	scaffold_6:3140452-3141261(+) (11)	NA	Q8W4L0	Probable calcium-binding protein CML49	AT3G10300.3	Calcium-binding EF-hand family protein 	LOC_Os11g04480.1	"peflin, putative, expressed"	Medtr2g107710.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29384.3.S1_s_at	A	A2TS	POPTR_0006s04590	POPTR_0016s04290 (11)//POPTR_0006s04590 (11)	scaffold_16:2481789-2481893(+) (11)//scaffold_6:3139600-3139704(+) (11)	NA	Q8W4L0	Probable calcium-binding protein CML49	AT3G10300.3	Calcium-binding EF-hand family protein 	LOC_Os11g04480.1	"peflin, putative, expressed"	Medtr2g107710.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29389.1.S1_at	A	A1TS	POPTR_0008s08790	POPTR_0008s08790 (11)	scaffold_8:5445956-5446403(-) (11)	NA	Q9C554	Expansin-A1	AT1G69530.2	expansin A1 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.294.1.S1_s_at	A	A1TS	POPTR_0006s21140	POPTR_0006s21140 (11)	scaffold_6:20233968-20234169(+) (11)	NA	Q9LMR5	F-box/kelch-repeat protein At1g15670	AT1G15670.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os06g39370.1	"OsFBK16 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g134000.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.294.3.S1_s_at	A	A1TS	POPTR_0006s21140	POPTR_0006s21140 (11)	scaffold_6:20234405-20234449(+) (11)	NA	Q9LMR5	F-box/kelch-repeat protein At1g15670	AT1G15670.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os06g39370.1	"OsFBK16 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g134000.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29405.1.S1_at	A	A1MS	POPTR_0001s14130	POPTR_0001s14130 (11)	scaffold_1:11087640-11087992(+) (11)	NA	Q8LAU9	GATA transcription factor 1	AT3G24050.1	GATA transcription factor 1 	LOC_Os02g43150.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g007680.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.29457.1.S1_s_at	A	A1TS	POPTR_0006s26870	POPTR_0006s26870 (11)	scaffold_6:24941329-24941773(-) (11)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT4G32390.1	Nucleotide-sugar transporter family protein 	LOC_Os05g41480.2	"domain of unknown function, DUF250 domain containing protein, expressed"	Medtr3g136750.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2947.1.S1_at	A	A1TS	POPTR_0017s13950	POPTR_0017s13950 (11)	scaffold_17:14112211-14112703(+) (11)	NA	O80931	Transcription factor AS1	AT2G37630.1	myb-like HTH transcriptional regulator family protein 	LOC_Os12g38400.2	"MYB family transcription factor, putative, expressed"	Medtr7g068530.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2947.2.A1_at	A	A1TA	POPTR_0017s13950	POPTR_0017s13950 (11)	scaffold_17:14112473-14112720(-) (11)	NA	O80931	Transcription factor AS1	AT2G37630.1	myb-like HTH transcriptional regulator family protein 	LOC_Os12g38400.2	"MYB family transcription factor, putative, expressed"	Medtr7g068530.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29473.1.S1_at	A	A1TS	POPTR_0002s03110	POPTR_0002s03110 (11)	scaffold_2:1931698-1931760(-) (11)	NA	A7SWD3	UPF0559 protein v1g247787	AT1G06060.1	LisH and RanBPM domains containing protein 	LOC_Os01g56820.1	"AGAP000951-PA, putative, expressed"	Medtr1g024890.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29473.1.S1_s_at	A	A1TS	POPTR_0002s03110	POPTR_0002s03110 (11)	scaffold_2:1930680-1931680(-) (11)	NA	A7SWD3	UPF0559 protein v1g247787	AT1G06060.1	LisH and RanBPM domains containing protein 	LOC_Os01g56820.1	"AGAP000951-PA, putative, expressed"	Medtr1g024890.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2948.2.S1_at	A	A2TS	POPTR_0005s23490	POPTR_0005s23490 (11)//POPTR_0002s05060 (10)	scaffold_2:3276446-3278633(+) (11)//scaffold_5:22222327-22224107(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.29487.1.S1_a_at	A	A2TS	POPTR_0008s06110	POPTR_0008s06110 (11)//POPTR_0010s20510 (11)	scaffold_10:18064848-18065043(+) (11)//scaffold_8:3615868-3616058(-) (11)	NA	P48484	Serine/threonine-protein phosphatase PP1 isozyme 4	AT2G39840.1	type one serine/threonine protein phosphatase 4 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr5g088510.1	Ribosomal protein S16; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.29487.1.S1_at	A	A1TS	POPTR_0008s06110	POPTR_0008s06110 (11)	scaffold_8:3614161-3615822(-) (11)	NA	P48484	Serine/threonine-protein phosphatase PP1 isozyme 4	AT2G39840.1	type one serine/threonine protein phosphatase 4 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr5g088510.1	Ribosomal protein S16; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.29487.2.A1_at	A	A1TS	POPTR_0010s20510	POPTR_0010s20510 (11)	scaffold_10:18065175-18065898(+) (11)	NA	P48484	Serine/threonine-protein phosphatase PP1 isozyme 4	AT2G39840.1	type one serine/threonine protein phosphatase 4 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr5g088510.1	Ribosomal protein S16; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.2951.2.S1_at	A	A1TS	POPTR_0017s01380	POPTR_0017s01380 (11)	scaffold_17:954655-955068(-) (11)	NA	Q6R0H1	Protein LHY	AT5G17300.1	Homeodomain-like superfamily protein 	LOC_Os04g49450.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29518.1.S1_at	A	A1TS	POPTR_0016s08130	POPTR_0016s08130 (11)	scaffold_16:5986149-5986746(-) (11)	NA	Q6DF08	UDP-glucuronic acid decarboxylase 1	AT3G53520.1	UDP-glucuronic acid decarboxylase 1 	LOC_Os05g29990.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.29519.1.S1_at	A	A1TS	POPTR_0008s10930	POPTR_0008s10930 (11)	scaffold_8:6870795-6873859(-) (11)	NA	Q550W1	Uncharacterized CDP-alcohol phosphatidyltransferase class-I family protein 3	AT1G13560.1	aminoalcoholphosphotransferase 1 	LOC_Os02g02750.1	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr3g017160.1	CDP-alcohol phosphatidyltransferase 	GO:0008654|phospholipid biosynthetic process	"GO:0016780|""phosphotransferase activity, for other substituted phosphate groups"""	GO:0016020|membrane
PtpAffx.29534.1.S1_at	A	A1MS	POPTR_0008s02690	POPTR_0008s02690 (11)	scaffold_8:1359213-1359701(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT1G08230.2	Transmembrane amino acid transporter family protein 	LOC_Os01g63854.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29568.1.S1_at	A	A1TS	POPTR_0001s28620	POPTR_0001s28620 (11)	scaffold_1:27386322-27386773(-) (11)	NA	O64738	"Zinc transporter 6, chloroplastic"	AT2G30080.1	ZIP metal ion transporter family 	LOC_Os05g07210.1	"metal cation transporter, putative, expressed"	Medtr5g080290.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.29571.1.S1_at	A	A1TS	POPTR_0010s25120	POPTR_0010s25120 (11)	scaffold_10:20959113-20959712(+) (11)	NA	Q9CAF5	"ABC transporter I family member 6, chloroplastic"	AT3G10670.1	non-intrinsic ABC protein 7 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29592.1.S1_at	A	A1TS	POPTR_0001s42700	POPTR_0001s42700 (10)	scaffold_1:42741561-42742109(+) (10)	NA	Q9C7S7	Endoplasmic oxidoreductin-1	AT1G72280.1	endoplasmic reticulum oxidoreductins 1 	LOC_Os03g52340.1	"endoplasmic oxidoreductin-1 precursor, putative, expressed"	Medtr2g056120.1	Endoplasmic reticulum oxidoreductin 1 	GO:0044260|cellular macromolecule metabolic process||GO:0006467|protein thiol-disulfide exchange||GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0009055|electron carrier activity||GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor""||GO:0005515|protein binding"	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.29594.1.A1_at	A	A1TS	POPTR_0008s12760	POPTR_0008s12760 (11)	scaffold_8:8243419-8243845(+) (11)	NA	Q8GUG9	U-box domain-containing protein 11	AT1G23030.1	ARM repeat superfamily protein 	LOC_Os02g49950.1	"spotted leaf 11, putative, expressed"	Medtr4g130390.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.29594.2.S1_at	A	A1TA	POPTR_0008s12760	POPTR_0008s12760 (10)	scaffold_8:8242728-8243256(-) (10)	POPTR_0010s12410 (6)	Q8GUG9	U-box domain-containing protein 11	AT1G23030.1	ARM repeat superfamily protein 	LOC_Os02g49950.1	"spotted leaf 11, putative, expressed"	Medtr4g130390.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.29625.1.A1_a_at	A	A1TS	POPTR_0006s01070	POPTR_0006s01070 (11)	scaffold_6:604340-605254(-) (11)	NA	Q9SU25	Transcription initiation factor IIF subunit alpha	AT4G12610.2	transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors 	LOC_Os10g10990.3	"transcription initiation factor IIF, alpha subunit domain containing protein, expressed"	Medtr2g029650.1	"Transcription Factor IIF, Rap30/Rap74, interaction "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045941|positive regulation of transcription	GO:0003677|DNA binding||GO:0016563|transcription activator activity	GO:0005634|nucleus
PtpAffx.29625.2.S1_at	A	A1TS	POPTR_0016s01680	POPTR_0016s01680 (11)	scaffold_16:763558-764585(+) (11)	NA	Q9SU25	Transcription initiation factor IIF subunit alpha	AT4G12610.2	transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors 	LOC_Os10g10990.1	"transcription initiation factor IIF, alpha subunit domain containing protein, expressed"	Medtr2g029650.1	"Transcription Factor IIF, Rap30/Rap74, interaction "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045941|positive regulation of transcription	GO:0003677|DNA binding||GO:0016563|transcription activator activity	GO:0005634|nucleus
PtpAffx.29632.1.S1_at	A	A1TS	POPTR_0001s23430	POPTR_0001s23430 (10)	scaffold_1:22789727-22790661(-) (10)	NA	A2SY66	Vicianin hydrolase (Fragment)	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39880.1	"Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed"	Medtr8g146400.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.29653.1.S1_s_at	A	A2TS	POPTR_0004s11760	POPTR_0017s12760 (11)//POPTR_0004s11760 (11)	scaffold_17:12927452-12927843(-) (11)//scaffold_4:10620140-10620531(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT5G15490.1	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25690.1	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.29666.1.S1_a_at	A	A2TS	POPTR_0004s03600	POPTR_0011s04400 (11)//POPTR_0004s03600 (11)	scaffold_11:4389895-4391076(-) (11)//scaffold_4:2499674-2500907(-) (11)	NA	Q5RET6	Transmembrane protein 184C	AT1G11200.1	Protein of unknown function (DUF300) 	LOC_Os07g32230.1	"domain of unknown function domain containing protein, expressed"	Medtr2g014110.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29666.1.S1_at	A	A1TS	POPTR_0004s03600	POPTR_0004s03600 (11)	scaffold_4:2499373-2500943(-) (11)	NA	Q5RET6	Transmembrane protein 184C	AT1G11200.1	Protein of unknown function (DUF300) 	LOC_Os07g32230.1	"domain of unknown function domain containing protein, expressed"	Medtr2g014110.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29666.2.S1_at	A	A1TS	POPTR_0011s04400	POPTR_0011s04400 (11)	scaffold_11:4389623-4391139(-) (11)	NA	Q5RET6	Transmembrane protein 184C	AT4G21570.1	Protein of unknown function (DUF300) 	LOC_Os07g32230.1	"domain of unknown function domain containing protein, expressed"	Medtr2g014110.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29683.1.S1_a_at	A	A1TS	POPTR_0001s25980	POPTR_0001s25980 (11)	scaffold_1:25075528-25076005(-) (11)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os07g49310.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr5g079460.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.297.2.A1_a_at	A	A1TS	POPTR_0018s06800	POPTR_0018s06800 (11)	scaffold_18:6857201-6858156(+) (11)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT5G56590.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os01g53750.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g160090.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.29721.1.S1_at	A	A1TS	POPTR_0016s01220	POPTR_0016s01220 (11)	scaffold_16:515945-516259(-) (11)	NA	P54928	Inositol monophosphatase 3	AT3G02870.1	Inositol monophosphatase family protein 	LOC_Os03g39000.2	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.29724.1.S1_a_at	A	A1TS	POPTR_0009s16760	POPTR_0009s16760 (11)	scaffold_9:12663374-12664639(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g164060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29726.1.A1_s_at	A	A1TS	POPTR_0008s09330	POPTR_0008s09330 (11)	scaffold_8:5770885-5771660(-) (11)	NA	Q9LMG8	Putative SNAP25 homologous protein SNAP30	AT1G13890.1	soluble N-ethylmaleimide-sensitive factor adaptor protein 30 	LOC_Os02g32740.1	"SNARE domain containing protein, putative, expressed"	Medtr5g046670.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29753.1.A1_at	A	A1TS	POPTR_0011s13430	POPTR_0011s13430 (11)	scaffold_11:16172774-16175621(+) (11)//scaffold_11:16188665-16188723(+) (10)//scaffold_206:617-690(+) (11)//scaffold_206:33430-33488(+) (10)	NA	O81974	Cytochrome P450 71D8	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os01g27890.1	"cytochrome P450, putative, expressed"	Medtr3g073880.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.2977.1.S1_at	A	A1TS	POPTR_0010s18400	POPTR_0010s18400 (9)	scaffold_10:16647606-16648552(+) (9)	NA	Q6NLC1	"ABC transporter D family member 2, chloroplastic"	AT1G54350.1	ABC transporter family protein 	LOC_Os01g11946.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr2g080650.1	Peroxysomal long chain fatty acyl transporter 	GO:0006810|transport	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.29775.1.S1_a_at	A	A1TS	POPTR_0012s10630	POPTR_0012s10630 (11)	scaffold_12:11352824-11353648(+) (11)	NA	P97363	Serine palmitoyltransferase 2	AT5G23670.2	long chain base2 	LOC_Os11g31640.1	"serine palmitoyltransferase 2, putative, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.29775.2.S1_a_at	A	A1TS	POPTR_0012s10630	POPTR_0012s10630 (11)	scaffold_12:11353563-11353827(+) (11)	NA	P97363	Serine palmitoyltransferase 2	AT5G23670.2	long chain base2 	LOC_Os11g31640.1	"serine palmitoyltransferase 2, putative, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.29786.1.S1_at	A	A1TS	POPTR_0016s08380	POPTR_0016s08380 (11)	scaffold_16:6181445-6182066(-) (11)	NA	NA	NA	AT5G02770.1	unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). 	LOC_Os03g17490.2	expressed protein	AC235022_12.1	hypothetical protein AC235022.1 78747-76265 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29788.1.S1_at	A	A1TS	POPTR_0001s12920	POPTR_0001s12920 (9)	scaffold_1:10019070-10020170(-) (9)	NA	Q9LYR5	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 7, chloroplastic"	AT5G13410.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g04160.2	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr7g006110.1	hypothetical protein 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.29795.1.S1_at	A	A1TS	POPTR_0004s00800	POPTR_0004s00800 (11)	scaffold_4:363514-364198(-) (11)	NA	Q9Z2Y8	Proline synthase co-transcribed bacterial homolog protein	AT1G11930.2	"Predicted pyridoxal phosphate-dependent enzyme, YBL036C type "	LOC_Os05g05740.1	"proline synthetase co-transcribed bacterial homolog protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29795.1.S1_s_at	A	A1TS	POPTR_0004s00800	POPTR_0004s00800 (11)	scaffold_4:363545-364016(-) (11)	NA	Q9Z2Y8	Proline synthase co-transcribed bacterial homolog protein	AT1G11930.2	"Predicted pyridoxal phosphate-dependent enzyme, YBL036C type "	LOC_Os05g05740.1	"proline synthetase co-transcribed bacterial homolog protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29876.1.S1_at	A	A1TS	POPTR_0006s21450	POPTR_0006s21450 (10)	scaffold_6:20522425-20524944(+) (10)	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.3	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29876.1.S1_s_at	A	A2TS	POPTR_0006s21450	POPTR_0006s21450 (11)//POPTR_0016s06670 (11)	scaffold_16:4482876-4484599(+) (11)//scaffold_6:20523205-20524870(+) (11)	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.3	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29886.1.A1_at	A	A1TS	POPTR_0016s13320	POPTR_0016s13320 (11)	scaffold_16:12516827-12517191(+) (11)	NA	O80920	Abscisic acid receptor PYL4	AT2G38310.1	PYR1-like 4 	LOC_Os03g18600.1	"cyclase/dehydrase family protein, putative, expressed"	Medtr7g076110.1	Bet v I allergen; Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29892.1.S1_s_at	A	A1TS	POPTR_0005s04240	POPTR_0005s04240 (11)	scaffold_5:2847481-2847747(-) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G27320.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g098780.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.299.3.A1_a_at	A	A2TS	POPTR_0789s00200	POPTR_0789s00200 (11)//POPTR_0007s14040 (10)	scaffold_7:13973537-13974652(+) (10)//scaffold_789:2075-3184(-) (11)	POPTR_0789s00210 (8)	Q42064	60S ribosomal protein L8-3	AT4G36130.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr7g084800.1	Elongation factor P-like protein YeiP 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.2990.1.A1_at	A	A1TS	POPTR_0006s27810	POPTR_0006s27810 (11)	scaffold_6:25667617-25667991(-) (11)	NA	Q9S775	CHD3-type chromatin-remodeling factor PICKLE	AT2G25170.1	chromatin remodeling factor CHD3 (PICKLE) 	LOC_Os06g08480.1	"CHD3-type chromatin-remodeling factor PICKLE, putative, expressed"	Medtr3g138080.1	"Helicase, C-terminal; Homeodomain-like; Protein of unknown function DUF1087 "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.2990.2.S1_at	A	A1TS	POPTR_0018s02350	POPTR_0018s02350 (11)	scaffold_18:2094492-2094937(-) (11)	NA	Q9S775	CHD3-type chromatin-remodeling factor PICKLE	AT2G25170.1	chromatin remodeling factor CHD3 (PICKLE) 	LOC_Os06g08480.1	"CHD3-type chromatin-remodeling factor PICKLE, putative, expressed"	Medtr3g138080.1	"Helicase, C-terminal; Homeodomain-like; Protein of unknown function DUF1087 "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.29901.1.S1_at	A	A1TS	POPTR_0010s24550	POPTR_0010s24550 (11)	scaffold_10:20709979-20710420(-) (11)	NA	Q9SZX3	"Argininosuccinate synthase, chloroplastic"	AT4G24830.1	arginosuccinate synthase family 	LOC_Os12g13320.1	"argininosuccinate synthase, chloroplast precursor, putative, expressed"	Medtr8g109450.1	Argininosuccinate synthase 	GO:0044283|small molecule biosynthetic process||GO:0006526|arginine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004055|argininosuccinate synthase activity||GO:0005524|ATP binding	NA
PtpAffx.29903.1.S1_at	A	A1TS	POPTR_0005s10910	POPTR_0005s10910 (11)	scaffold_5:7853940-7854569(+) (11)	NA	NA	NA	AT4G35750.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os04g47330.1	"rho-GTPase-activating protein-related, putative, expressed"	Medtr5g023170.1	"Rho-GTPase-activating protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29912.1.A1_at	A	A1TS	POPTR_0018s08990	POPTR_0018s08990 (11)	scaffold_18:9888396-9888593(+) (11)	NA	Q9FYG3	Probable plastidic glucose transporter 2	AT1G67300.1	Major facilitator superfamily protein 	LOC_Os02g17500.3	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.29932.1.S1_at	A	A1TS	POPTR_0010s22230	POPTR_0010s22230 (11)	scaffold_10:19212434-19212845(-) (11)	NA	A2XFB7	Two-component response regulator-like PRR73	AT5G02810.1	pseudo-response regulator 7 	LOC_Os03g17570.3	"response regulator receiver domain containing protein, expressed"	Medtr4g079920.1	Response regulator receiver; CCT 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.29932.2.S1_s_at	A	A1TS	POPTR_0008s04610	POPTR_0008s04610 (11)	scaffold_8:2637912-2638734(+) (11)	NA	Q10N34	Two-component response regulator-like PRR73	AT5G02810.1	pseudo-response regulator 7 	LOC_Os03g17570.3	"response regulator receiver domain containing protein, expressed"	Medtr4g079920.1	Response regulator receiver; CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29935.1.S1_at	A	A1MS	POPTR_0015s05250	POPTR_0015s05250 (11)	scaffold_15:5615276-5616257(+) (11)	NA	NA	NA	AT1G18335.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g53260.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr6g076470.1	GCN5-related N-acetyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29939.1.A1_at	A	A1MS	POPTR_0002s25490	POPTR_0002s25490 (10)	scaffold_2:22561824-22562336(-) (10)	NA	NA	NA	AT4G28760.2	Protein of unknown function (DUF3741) 	LOC_Os04g42770.5	expressed protein	Medtr7g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29976.1.S1_s_at	A	A1TS	POPTR_0003s20840	POPTR_0003s20840 (11)	scaffold_3:19234466-19235254(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g06240.2	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29976.2.S1_s_at	A	A1TS	POPTR_0001s03940	POPTR_0001s03940 (11)	scaffold_1:3139727-3140325(-) (11)	NA	Q4R5D9	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g06240.2	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29984.1.S1_s_at	A	A1TS	POPTR_0010s05570	POPTR_0010s05570 (11)	scaffold_10:7016681-7017449(-) (11)	NA	Q07123	Copper methylamine oxidase	AT2G42490.1	Copper amine oxidase family protein 	LOC_Os04g40040.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr3g114690.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.29992.1.A1_at	A	A1TS	POPTR_0014s07190	POPTR_0014s07190 (11)	scaffold_14:5441500-5441947(+) (11)	NA	Q9LEX0	F-box protein PP2-A13	AT3G61060.1	phloem protein 2-A13 	LOC_Os04g48270.3	"OsFBX148 - F-box domain containing protein, expressed"	Medtr1g129330.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29996.1.S1_at	A	A1TS	POPTR_0003s08370	POPTR_0003s08370 (11)	scaffold_3:9752818-9754535(-) (11)	NA	Q8JFY9	Poly(U)-specific endoribonuclease-A	AT4G17100.2	EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998). 	LOC_Os04g45910.1	"placental protein 11 precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3000.1.A1_at	A	A1TS	POPTR_0001s15580	POPTR_0001s15580 (11)	scaffold_1:12443288-12443795(+) (11)	NA	P97868	E3 ubiquitin-protein ligase RBBP6	AT5G47430.1	"DWNN domain, a CCHC-type zinc finger "	LOC_Os03g45730.1	"DNA-binding protein-like, putative, expressed"	Medtr8g105530.1	"DNA-binding protein-like, putative "	NA	GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.30001.1.S1_at	A	A1TS	POPTR_0005s27430	POPTR_0005s27430 (11)	scaffold_5:25107156-25107912(+) (11)	NA	Q9HGL2	Uncharacterized calcium-binding protein C800.10c	AT1G21630.2	Calcium-binding EF hand family protein 	LOC_Os03g03830.1	"EF hand family protein, putative, expressed"	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30004.1.S1_at	A	A1TS	POPTR_0004s08840	POPTR_0004s08840 (11)	scaffold_4:7427429-7427746(-) (11)	NA	Q8L7A4	Probable ADP-ribosylation factor GTPase-activating protein AGD11	AT3G17980.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g22130.1	expressed protein	Medtr4g154840.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30016.1.S1_at	A	A1TS	POPTR_0014s13170	POPTR_0014s13170 (11)	scaffold_14:9698160-9698537(+) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT3G63010.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g111060.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.30031.1.S1_at	A	A2TS	POPTR_0016s10390	POPTR_0016s10390 (11)//POPTR_0016s10400 (11)	scaffold_16:8630746-8631517(+) (11)//scaffold_16:8643249-8644020(+) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os05g38230.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.30035.2.A1_s_at	A	A1TS	POPTR_0002s05170	POPTR_0002s05170 (11)	scaffold_2:3351720-3351780(+) (11)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30035.3.A1_at	A	A1MS	POPTR_0002s05170	POPTR_0002s05170 (10)	scaffold_2:3351363-3351564(+) (10)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30053.1.A1_at	A	A1TS	POPTR_0003s14650	POPTR_0003s14650 (11)	scaffold_3:14667641-14669767(+) (11)	NA	Q40863	Embryogenesis-associated protein EMB8	AT3G50790.1	esterase/lipase/thioesterase family protein 	LOC_Os02g43340.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g122270.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30090.1.S1_at	A	A1TS	POPTR_0002s10480	POPTR_0002s10480 (10)	scaffold_2:7563493-7563698(-) (10)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G09750.1	Eukaryotic aspartyl protease family protein 	LOC_Os03g08790.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g149190.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30107.1.S1_at	A	A1TS	POPTR_0019s08030	POPTR_0019s08030 (11)	scaffold_19:9348830-9349261(-) (11)	NA	Q9SWF9	Zinc finger CCCH domain-containing protein ZFN-like	AT3G02830.1	zinc finger protein 1 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g089530.1	"Zinc finger, CCCH-type; Sugar transporter superfamily "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.30128.1.S1_at	A	A1TS	POPTR_0001s02320	POPTR_0001s02320 (11)	scaffold_1:1756442-1756947(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G23910.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g42620.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30130.1.S1_at	A	A1TS	POPTR_0007s14900	POPTR_0007s14900 (11)	scaffold_7:14599533-14600360(+) (11)	NA	A4XP61	Amino-acid acetyltransferase	AT4G37670.2	N-acetyl-l-glutamate synthase 2 	LOC_Os03g31690.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g015470.1	Amino-acid N-acetyltransferase (ArgA) 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.30130.2.A1_s_at	A	A2TS	POPTR_0007s14900	POPTR_0014s01000 (11)//POPTR_0007s14900 (11)	scaffold_14:954669-956741(+) (11)//scaffold_7:14598225-14600140(+) (11)	NA	A4XP61	Amino-acid acetyltransferase	AT4G37670.2	N-acetyl-l-glutamate synthase 2 	LOC_Os03g31690.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g015470.1	Amino-acid N-acetyltransferase (ArgA) 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.3014.2.A1_at	A	A1TS	POPTR_0016s01500	POPTR_0016s01500 (10)	scaffold_16:684988-685311(-) (10)	NA	O74503	Upstream activation factor subunit spp27	AT4G22360.1	SWIB complex BAF60b domain-containing protein 	LOC_Os08g39310.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr3g076380.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30151.2.S1_a_at	A	A1TS	POPTR_0005s25240	POPTR_0005s25240 (11)	scaffold_5:23545265-23545404(-) (11)	NA	Q9SFZ3	Transcription factor bHLH110	AT1G27660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01600.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30166.1.S1_at	A	A1TS	POPTR_0006s03280	POPTR_0006s03280 (11)	scaffold_6:2088316-2089157(+) (11)	NA	Q9LXX5	"PsbP domain-containing protein 6, chloroplastic"	AT3G56650.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os01g59090.1	"thylakoid lumenal 20 kDa protein, putative, expressed"	Medtr7g105810.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30187.1.S1_at	A	A1TS	POPTR_0015s10680	POPTR_0015s10680 (11)	scaffold_15:11541621-11542152(+) (11)	NA	Q8LBB2	SNF1-related protein kinase regulatory subunit gamma 1	AT3G48530.1	SNF1-related protein kinase regulatory subunit gamma 1 	LOC_Os04g31340.1	"CBS domain containing membrane protein, putative, expressed"	Medtr8g109260.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30187.2.S1_at	A	A1TS	POPTR_0012s09900	POPTR_0012s09900 (11)	scaffold_12:10793116-10794002(+) (11)	NA	Q8LBB2	SNF1-related protein kinase regulatory subunit gamma 1	AT3G48530.1	SNF1-related protein kinase regulatory subunit gamma 1 	LOC_Os04g31340.1	"CBS domain containing membrane protein, putative, expressed"	Medtr8g109260.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30207.1.S1_s_at	A	A1TS	POPTR_0004s23520	POPTR_0004s23520 (11)	scaffold_4:22215007-22215056(-) (11)	NA	Q9ZRE2	Ras-related protein RABD1	AT3G11730.1	Ras-related small GTP-binding family protein 	LOC_Os05g01490.1	"ras-related protein, putative"	Medtr2g005330.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.30216.1.S1_at	A	A1TS	POPTR_0013s01160	POPTR_0013s01160 (11)	scaffold_13:625028-625678(-) (11)	NA	Q9CPW7	Zinc finger matrin-type protein 2	AT3G05760.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os03g61640.1	"ZOS3-23 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.3023.1.A1_at	A	A1TS	POPTR_0005s07160	POPTR_0005s07160 (11)	scaffold_5:4817145-4817402(+) (11)	NA	Q9STN5	"Uncharacterized protein At4g08330, chloroplastic"	AT4G08330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g61680.1	expressed protein	Medtr3g100830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3024.1.A1_at	A	A1TS	POPTR_0002s12590	POPTR_0002s12590 (11)	scaffold_2:9382637-9383133(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT5G42940.1	RING/U-box superfamily protein 	LOC_Os04g55510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g024190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30252.1.S1_at	A	A1TS	POPTR_0005s16250	POPTR_0005s16250 (11)	scaffold_5:12956636-12957060(-) (11)	NA	NA	NA	AT1G36980.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os02g35880.1	"salt tolerant protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30252.2.A1_s_at	A	A1TS	POPTR_0002s08980	POPTR_0002s08980 (11)	scaffold_2:6350314-6352324(-) (11)	NA	Q9CXL1	Transmembrane protein 50A	AT1G36980.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os02g35880.1	"salt tolerant protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30264.1.S1_at	A	A1TS	POPTR_0001s32100	POPTR_0001s32100 (11)	scaffold_1:30515434-30515844(-) (11)	NA	NA	NA	AT1G80610.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 73 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	NA	NA	Medtr3g137930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30264.2.S1_at	A	A1TS	POPTR_0001s32100	POPTR_0001s32100 (10)	scaffold_1:30519530-30519820(-) (10)	NA	NA	NA	AT1G80610.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 73 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	NA	NA	Medtr3g137930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30275.1.A1_at	A	A1TS	POPTR_0009s10640	POPTR_0009s10640 (11)	scaffold_9:9101674-9101957(-) (11)	NA	Q94CL9	Cyclin-dependent kinase inhibitor 7	AT1G49620.1	Cyclin-dependent kinase inhibitor family protein 	NA	NA	Medtr5g017600.1	Cyclin-dependent kinase inhibitor 	GO:0007050|cell cycle arrest	GO:0004861|cyclin-dependent protein kinase inhibitor activity	GO:0005634|nucleus
PtpAffx.3029.1.S1_at	A	A1TS	POPTR_0003s13900	POPTR_0003s13900 (11)	scaffold_3:14125879-14126338(-) (11)	NA	Q9FGM1	Abscisic acid receptor PYL8	AT5G53160.2	regulatory components of ABA receptor 3 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30321.1.A1_at	A	A1TS	POPTR_0013s02720	POPTR_0013s02720 (9)	scaffold_13:1642613-1643343(+) (9)	NA	Q61768	Kinesin-1 heavy chain	AT3G63480.2	ATP binding microtubule motor family protein 	LOC_Os08g02380.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30325.2.S1_a_at	A	A1TS	POPTR_0005s10760	POPTR_0005s10760 (11)	scaffold_5:7717907-7718310(-) (11)	NA	Q8GXB1	UPF0548 protein At2g17695	AT2G17695.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960). 	LOC_Os04g02890.2	expressed protein	Medtr8g088930.1	"UPRF0548 protein At2g17695, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3033.1.S1_at	A	A1TS	POPTR_0005s21350	POPTR_0005s21350 (11)	scaffold_5:20445978-20447265(-) (10)	POPTR_0002s06970 (7)	Q9CV28	Protein FAM188A	AT1G43690.1	ubiquitin interaction motif-containing protein 	LOC_Os04g34440.1	"ubiquitin interaction motif-containing protein, putative, expressed"	Medtr1g125350.1	Ubiquitin interacting motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30333.1.A1_at	A	A1TS	POPTR_0001s31810	POPTR_0001s31810 (11)	scaffold_1:30182550-30183207(+) (11)	NA	Q41364	"2-oxoglutarate/malate translocator, chloroplastic"	AT5G64290.1	dicarboxylate transport 2.1 	LOC_Os09g29430.1	"citrate transporter, putative, expressed"	Medtr2g009260.1	Sodium/sulphate symporter 	GO:0006814|sodium ion transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.3034.1.S1_at	A	A1TS	POPTR_0006s03090	POPTR_0006s03090 (11)	scaffold_6:1965969-1966441(+) (11)	NA	NA	NA	AT3G56880.1	VQ motif-containing protein 	LOC_Os01g17050.1	"VQ domain containing protein, putative, expressed"	Medtr7g105490.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30347.1.A1_at	A	A1TS	POPTR_0018s06450	POPTR_0018s06450 (11)	scaffold_18:6371931-6372416(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT1G08070.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g08120.1	"pentatricopeptide, putative, expressed"	Medtr8g119600.1	Pancreatic ribonuclease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30349.1.A1_at	A	A1TS	POPTR_0019s10780	POPTR_0019s10780 (11)	scaffold_19:12281773-12282266(+) (11)	NA	Q96DG6	Carboxymethylenebutenolidase homolog	AT1G35420.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g35470.1	"dienelactone hydrolase family protein, expressed"	Medtr3g012630.2	Dienelactone hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.30354.1.A1_at	A	A1TS	POPTR_0011s14880	POPTR_0011s14880 (10)	scaffold_11:17137596-17137682(+) (10)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G38180.1	FAR1-related sequence 5 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr5g106890.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.30362.1.A1_at	A	A1TS	POPTR_0017s06130	POPTR_0017s06130 (10)	scaffold_17:4762157-4762703(+) (10)	NA	NA	NA	AT1G05870.4	Protein of unknown function (DUF1685) 	LOC_Os11g17930.1	expressed protein	Medtr1g146930.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30365.1.A1_at	A	A1TS	POPTR_0011s07660	POPTR_0011s07660 (11)	scaffold_11:8504428-8505434(+) (11)	NA	Q6NMR9	GDSL esterase/lipase At5g45920	AT5G45920.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os01g11570.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g018940.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.30365.2.A1_at	A	A1TS	POPTR_0004s05300	POPTR_0004s05300 (11)	scaffold_4:4051132-4055209(-) (11)	NA	Q6NMR9	GDSL esterase/lipase At5g45920	AT5G45920.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os01g11570.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g018940.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.30368.1.S1_at	A	A1TS	POPTR_0016s14090	POPTR_0016s14090 (11)	scaffold_16:13327356-13329078(+) (11)	NA	NA	NA	AT3G51730.1	saposin B domain-containing protein 	LOC_Os01g07250.1	"saposin-like type B, region 1 family protein, putative, expressed"	NA	NA	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.30368.2.S1_s_at	A	A1TS	POPTR_0006s10790	POPTR_0006s10790 (11)	scaffold_6:8158113-8160544(+) (11)	NA	NA	NA	AT3G51730.1	saposin B domain-containing protein 	LOC_Os01g07250.1	"saposin-like type B, region 1 family protein, putative, expressed"	NA	NA	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.3037.1.S1_at	A	A1TS	POPTR_0010s23030	POPTR_0010s23030 (11)	scaffold_10:19730304-19731441(-) (11)	NA	Q9GMB0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	AT2G01720.1	Ribophorin I 	LOC_Os05g23600.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed"	Medtr1g120720.1	Ribophorin I 	GO:0006486|protein amino acid glycosylation	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.30375.1.A1_s_at	A	A1TS	POPTR_0011s06910	POPTR_0011s06910 (11)	scaffold_11:7632949-7633389(-) (11)	NA	Q9LMI0	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7"	AT1G06410.1	trehalose-phosphatase/synthase 7 	LOC_Os01g54560.1	"trehalose synthase, putative, expressed"	Medtr4g110050.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.30378.1.A1_s_at	A	A1TS	POPTR_0009s15870	POPTR_0009s15870 (11)	scaffold_9:12177890-12188857(+) (11)	NA	NA	NA	AT2G21530.1	SMAD/FHA domain-containing protein  	LOC_Os12g03070.2	"FHA domain containing protein, putative, expressed"	Medtr3g111120.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3038.1.S1_at	A	A1TS	POPTR_0009s10330	POPTR_0009s10330 (11)	scaffold_9:8900050-8900541(+) (11)	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT3G19300.1	Protein kinase superfamily protein 	LOC_Os04g59320.1	"protein kinase domain containing protein, expressed"	Medtr4g130010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30380.1.S1_at	A	A1MS	POPTR_0013s15290	POPTR_0013s15290 (10)	scaffold_13:15301252-15301753(+) (10)	NA	Q9SG96	RING-H2 finger protein ATL72	AT3G10910.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr7g080330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30391.1.A1_at	A	A1TS	POPTR_0006s28220	POPTR_0006s28220 (11)	scaffold_6:25981066-25981252(-) (11)	NA	Q03730	Uncharacterized vacuolar membrane protein YML018C	AT4G32140.1	EamA-like transporter family 	LOC_Os04g55260.1	"thiamine-repressible mitochondrial transport protein THI74, putative, expressed"	Medtr7g064590.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30399.1.S1_at	A	A1TS	POPTR_0003s14050	POPTR_0003s14050 (11)	scaffold_3:14243421-14244068(+) (11)	NA	Q8LAH8	"Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial"	AT4G23900.1	Nucleoside diphosphate kinase family protein 	LOC_Os05g51700.1	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30441.1.A1_at	A	A1TS	POPTR_0007s06110	POPTR_0007s06110 (10)	scaffold_7:4236733-4237128(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30445.1.A1_at	A	A1TS	POPTR_0008s12890	POPTR_0008s12890 (11)	scaffold_8:8380531-8381107(-) (11)	NA	Q9C9U4	Mitogen-activated protein kinase 15	AT1G73670.1	MAP kinase 15 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30445.2.S1_a_at	A	A2TS	POPTR_0008s12890	POPTR_0010s12240 (10)//POPTR_0008s12890 (10)	scaffold_10:12296210-12296243(+) (10)//scaffold_8:8382226-8382259(-) (10)	NA	Q9C9U4	Mitogen-activated protein kinase 15	AT1G73670.1	MAP kinase 15 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30445.2.S1_at	A	A1TS	POPTR_0010s12240	POPTR_0010s12240 (11)	scaffold_10:12295156-12296198(+) (11)	NA	Q9C9U4	Mitogen-activated protein kinase 15	AT1G73670.1	MAP kinase 15 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30451.1.S1_a_at	A	A1TS	POPTR_0019s11950	POPTR_0019s11950 (11)	scaffold_19:13152027-13152353(+) (11)	NA	Q681Q7	Uncharacterized protein At1g03900	AT3G58600.1	Adaptin ear-binding coat-associated protein 1 NECAP-1 	LOC_Os01g42830.1	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
PtpAffx.30451.2.S1_at	A	A1MS	POPTR_0019s11950	POPTR_0019s11950 (9)	scaffold_19:13152105-13152219(+) (9)	NA	Q681Q7	Uncharacterized protein At1g03900	AT3G58600.1	Adaptin ear-binding coat-associated protein 1 NECAP-1 	LOC_Os01g42830.1	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
PtpAffx.30476.2.A1_s_at	A	A1TS	POPTR_0005s27880	POPTR_0005s27880 (11)	scaffold_5:25352357-25352549(+) (11)	NA	Q8H0U8	DEAD-box ATP-dependent RNA helicase 42	AT1G20920.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g06344.3	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr2g007080.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.30481.1.A1_at	A	A1TS	POPTR_0002s02400	POPTR_0002s02400 (10)	scaffold_2:1357483-1364454(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30483.1.S1_at	A	A1TS	POPTR_0014s12620	POPTR_0014s12620 (11)	scaffold_14:9293745-9293924(+) (11)	NA	NA	NA	AT4G15802.1	heat shock factor binding protein 	NA	NA	Medtr7g130390.1	Heat shock factor binding 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30483.1.S1_s_at	A	A1TS	POPTR_0014s12620	POPTR_0014s12620 (10)	scaffold_14:9292650-9293739(+) (10)	NA	NA	NA	AT4G15802.1	heat shock factor binding protein 	NA	NA	Medtr7g130390.1	Heat shock factor binding 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30489.1.A1_at	A	A1TS	POPTR_0001s12210	POPTR_0001s12210 (11)	scaffold_1:9452027-9452354(-) (11)	NA	NA	NA	AT4G20090.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g43010.2	"transposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30497.1.A1_at	A	A1MA	POPTR_0006s13500	POPTR_0006s13500 (10)	scaffold_6:10713264-10713529(+) (10)	NA	Q8GYL7	"Pentatricopeptide repeat-containing protein At5g02830, chloroplastic"	AT5G02830.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g17634.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g120750.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30508.1.A1_at	A	A1TS	POPTR_0010s04350	POPTR_0010s04350 (10)	scaffold_10:5429811-5430419(+) (10)	NA	Q9LFY2	Homeobox-leucine zipper protein ATHB-54	AT1G27050.1	homeobox protein 54 	LOC_Os01g56969.1	"homeobox-leucine zipper protein ATHB-54, putative, expressed"	Medtr5g039270.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.30516.1.A1_at	A	A1TS	POPTR_0003s06440	POPTR_0003s06440 (11)	scaffold_3:7923214-7923888(+) (11)	NA	O43592	Exportin-T	AT1G72560.3	ARM repeat superfamily protein 	LOC_Os07g42180.1	"exportin 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30517.1.S1_s_at	A	A1TS	POPTR_0019s03540	POPTR_0019s03540 (11)	scaffold_19:3629736-3630264(+) (11)	NA	NA	NA	AT5G28490.1	Protein of unknown function (DUF640) 	LOC_Os06g46030.1	"DUF640 domain containing protein, putative, expressed"	Medtr5g080780.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30519.1.A1_at	A	A1TS	POPTR_0010s23410	POPTR_0010s23410 (11)	scaffold_10:20014746-20014890(-) (11)	NA	NA	NA	AT2G39170.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os08g05630.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30525.1.A1_at	A	A1TS	POPTR_0001s11050	POPTR_0001s11050 (11)	scaffold_1:8566083-8566369(+) (11)	NA	P19813	Trehalase	AT4G24040.1	trehalase 1 	LOC_Os10g37660.1	"trehalase precursor, putative, expressed"	NA	NA	GO:0005991|trehalose metabolic process	"GO:0004555|""alpha,alpha-trehalase activity"""	NA
PtpAffx.30556.2.S1_s_at	A	A1TS	POPTR_0001s47590	POPTR_0001s47590 (11)	scaffold_1:47718711-47718752(+) (11)	NA	Q9S7N7	"Photosystem I reaction center subunit V, chloroplastic"	AT1G55670.1	photosystem I subunit G 	LOC_Os09g30340.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	Medtr3g016960.1	Photosystem I psaG/psaK protein 	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
PtpAffx.30565.1.A1_at	A	A1TS	POPTR_0014s05980	POPTR_0014s05980 (10)	scaffold_14:4479776-4482109(-) (10)	NA	Q9SHC8	Vesicle-associated protein 1-2	AT2G45140.1	plant VAP homolog 12 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr4g028690.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.30567.1.A1_at	A	A1TS	POPTR_0005s23340	POPTR_0005s23340 (11)	scaffold_5:22153474-22154234(-) (11)	POPTR_0002s05140 (6)	Q9ZQI8	Non-specific lipid-transfer protein-like protein At2g13820	AT3G22600.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g07930.1	"LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g007090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30574.1.A1_at	A	A2TS	POPTR_0347s00210	POPTR_0347s00210 (10)//POPTR_0010s11930 (9)	scaffold_10:12058210-12058248(-) (9)//scaffold_347:2731-8443(-) (10)	NA	Q9LQU4	Uncharacterized protein At1g14870	AT5G35525.1	PLAC8 family protein 	LOC_Os02g36950.2	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g129520.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3058.1.A1_a_at	A	A2TS	POPTR_0008s18090	POPTR_0008s18090 (11)//POPTR_0010s06360 (11)	scaffold_10:7739515-7739555(-) (11)//scaffold_8:12122951-12122991(+) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT3G27320.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g67600.1	"CXE carboxylesterase, putative, expressed"	Medtr6g071010.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.3058.1.A1_s_at	A	A1TS	POPTR_0008s18090	POPTR_0008s18090 (11)	scaffold_8:12123292-12123338(+) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT3G27320.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g67600.1	"CXE carboxylesterase, putative, expressed"	Medtr6g071010.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.3058.2.A1_at	A	A1TS	POPTR_0010s06360	POPTR_0010s06360 (10)	scaffold_10:7739075-7739503(-) (10)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT3G27320.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g15400.1	"CXE carboxylesterase, putative, expressed"	Medtr6g071120.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.30582.1.A1_at	A	A1TS	POPTR_0013s05450	POPTR_0013s05450 (11)	scaffold_13:3893446-3894643(-) (11)	NA	Q43295	"Adenylyl-sulfate kinase 1, chloroplastic"	AT3G03900.1	adenosine-5'-phosphosulfate (APS) kinase 3 	LOC_Os07g38560.1	"adenylyl-sulfate kinase, putative, expressed"	Medtr8g101540.1	Adenylylsulfate kinase 	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30585.1.A1_at	A	A1TS	POPTR_0010s21830	POPTR_0010s21830 (10)	scaffold_10:18975517-18976961(+) (10)	NA	NA	NA	AT3G55240.1	Plant protein 1589 of unknown function 	LOC_Os05g38680.1	"plant-specific domain TIGR01589 family protein, expressed"	Medtr7g022750.1	Uncharacterized plant-specific domain 01589 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30602.1.A1_at	A	A1TS	POPTR_0014s03440	POPTR_0014s03440 (11)	scaffold_14:2777116-2777587(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr3g148280.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30610.1.A1_at	A	A1TS	POPTR_0012s13040	POPTR_0012s13040 (11)	scaffold_12:13349402-13349952(-) (11)	NA	P16924	Prolyl 4-hydroxylase subunit alpha-1	AT4G25600.1	Oxoglutarate/iron-dependent oxygenase 	LOC_Os10g27340.2	"oxidoreductase, putative, expressed"	Medtr2g025880.1	Metridin-like ShK toxin; 2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30620.1.A1_at	A	A1TS	POPTR_0003s14420	POPTR_0003s14420 (10)	scaffold_3:14503884-14504367(-) (11)	NA	O22264	Transcription factor MYB12	AT5G49330.1	myb domain protein 111 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30622.1.A1_at	A	A1TS	POPTR_0007s07850	POPTR_0007s07850 (10)	scaffold_7:6279799-6280204(-) (10)	NA	Q8RXF1	Probable splicing factor 3A subunit 1	AT1G14650.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein 	LOC_Os02g14780.2	"splicing factor 3 subunit 1, putative, expressed"	Medtr4g156190.1	SWAP/Surp; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.30638.1.A1_at	A	A1TS	POPTR_0004s17080	POPTR_0004s17080 (11)	scaffold_4:17440281-17440552(+) (11)	NA	Q69IL4	Transcription factor RF2a	AT4G38900.3	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g03550.1	"bZIP family transcription factor, putative, expressed"	Medtr4g097530.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.3064.1.S1_s_at	A	A1TS	POPTR_0005s12850	POPTR_0005s12850 (11)	scaffold_5:9656694-9657800(+) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.3064.2.S1_at	A	A1TS	POPTR_0007s12340	POPTR_0007s12340 (11)	scaffold_7:12665879-12666590(-) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.30658.1.A1_at	A	A1TS	POPTR_0005s27910	POPTR_0005s27910 (11)	scaffold_5:25362484-25363139(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G33600.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g41810.1	"reductase, putative, expressed"	Medtr4g006650.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.30659.1.A1_at	A	A1TS	POPTR_0002s17460	POPTR_0002s17460 (11)	scaffold_2:13219783-13220174(-) (11)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g65370.1	"MYB family transcription factor, putative"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30680.1.A1_at	A	A1TS	POPTR_0010s09300	POPTR_0010s09300 (10)	scaffold_10:10160019-10162046(-) (10)	NA	Q43468	Heat shock protein STI	AT1G04190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g41190.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr5g012180.1	Heat shock chaperonin-binding; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30693.1.A1_at	A	A1TS	POPTR_0005s14640	POPTR_0005s14640 (11)	scaffold_5:11656565-11656880(+) (11)	NA	P47926	Protein RSI-1	AT1G74670.1	Gibberellin-regulated family protein 	LOC_Os05g31280.1	"GASR5 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr5g085950.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3070.1.A1_at	A	A1TS	POPTR_0004s03320	POPTR_0004s03320 (11)	scaffold_4:2270849-2271982(-) (11)	NA	Q9M0Y6	"Putative PAP-specific phosphatase, mitochondrial"	AT4G05090.1	Inositol monophosphatase family protein 	LOC_Os07g37220.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.30703.1.A1_at	A	A1TS	POPTR_0005s09710	POPTR_0005s09710 (11)	scaffold_5:6800752-6801597(-) (11)	NA	P36428	Alanyl-tRNA synthetase	AT1G50200.1	Alanyl-tRNA synthetase 	LOC_Os10g10244.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr4g101440.1	"Alanyl-tRNA synthetase, class IIc "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006419|alanyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004813|alanine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.30717.1.S1_at	A	A1TS	POPTR_0016s09670	POPTR_0016s09670 (10)	scaffold_16:7725389-7725847(+) (10)	NA	B0BLT0	Zinc finger protein 593	AT2G36930.1	zinc finger (C2H2 type) family protein 	LOC_Os08g45040.1	"zinc finger protein 593, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.30719.1.A1_at	A	A1TS	POPTR_0010s00780	POPTR_0010s00780 (11)	scaffold_10:492795-493289(+) (11)	NA	Q9LRZ3	Pumilio homolog 24	AT3G16810.1	pumilio 24 	LOC_Os03g61560.1	expressed protein	NA	NA	NA	GO:0003723|RNA binding	NA
PtpAffx.30722.1.A1_s_at	A	A1TS	POPTR_0008s06460	POPTR_0008s06460 (11)	scaffold_8:3829167-3829349(-) (11)	NA	O04197	Coronatine-insensitive protein 1	AT2G39940.1	RNI-like superfamily protein 	LOC_Os05g37690.1	"OsFBL23 - F-box domain and LRR containing protein, expressed"	Medtr5g089200.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30724.1.S1_at	A	A1TS	POPTR_0004s16140	POPTR_0004s16140 (11)	scaffold_4:16580215-16580953(-) (11)	NA	Q6NKZ9	Probable receptor-like serine/threonine-protein kinase At4g34500	AT4G34500.1	Protein kinase superfamily protein 	LOC_Os03g12680.1	"protein kinase, putative, expressed"	Medtr3g162150.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30740.1.A1_s_at	A	A1MS	POPTR_0010s00350	POPTR_0010s00350 (11)	scaffold_10:142285-142619(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30743.1.A1_a_at	A	A1TS	POPTR_0013s03230	POPTR_0013s03230 (11)	scaffold_13:1975908-1975943(-) (11)//scaffold_13:1978663-1978698(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30743.1.A1_at	A	A1TS	POPTR_0013s03225	POPTR_0013s03225 (10)	scaffold_13:1975767-1975813(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30743.2.A1_at	A	A1TS	POPTR_0010s00300	POPTR_0010s00300 (10)	scaffold_10:96532-97004(-) (10)	NA	Q9FJ17	Protein DEHYDRATION-INDUCED 19 homolog 7	AT5G49230.1	Drought-responsive family protein 	LOC_Os05g28980.1	"drought induced 19 protein, putative, expressed"	Medtr1g100280.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30743.3.S1_s_at	A	A1TS	POPTR_0011s15540	POPTR_0011s15540 (11)	scaffold_11:17638379-17638837(+) (11)	NA	Q43784	"Granule-bound starch synthase 1, chloroplastic/amyloplastic"	AT1G32900.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g22930.3	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.30743.5.A1_at	A	A1TS	POPTR_0013s03230	POPTR_0013s03230 (11)	scaffold_13:1976353-1978660(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30748.1.A1_a_at	A	A2TS	POPTR_0019s05460	POPTR_0019s05460 (11)//POPTR_0013s05910 (9)	scaffold_13:4286999-4287980(-) (9)//scaffold_19:5809401-5810452(-) (11)	NA	Q7L273	BTB/POZ domain-containing protein KCTD9	AT5G55000.2	potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein 	LOC_Os03g06160.1	"BTBP1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with pentapeptide repeats, expressed"	NA	NA	GO:0006813|potassium ion transport	GO:0005249|voltage-gated potassium channel activity	GO:0008076|voltage-gated potassium channel complex
PtpAffx.30758.1.S1_at	A	A1TS	POPTR_0010s23980	POPTR_0010s23980 (11)	scaffold_10:20389596-20390034(-) (11)	NA	A6QLT2	Myotubularin-related protein 2	AT3G10550.1	Myotubularin-like phosphatases II superfamily 	LOC_Os08g44260.1	"inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed"	Medtr1g116840.1	Myotubularin-related 	GO:0016311|dephosphorylation	GO:0016791|phosphatase activity	NA
PtpAffx.30759.1.S1_at	A	A1TS	POPTR_0013s00670	POPTR_0013s00670 (11)	scaffold_13:329099-329560(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3076.1.S1_at	A	A1TS	POPTR_0005s04100	POPTR_0005s04100 (11)	scaffold_5:2707285-2707748(-) (11)	NA	Q3ECP6	GDSL esterase/lipase At1g54790	AT1G54790.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os05g33270.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g139630.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.3076.1.S1_s_at	A	A2TS	POPTR_0005s04100	POPTR_0013s02730 (11)//POPTR_0005s04100 (11)	scaffold_13:1646873-1647391(+) (11)//scaffold_5:2707209-2707732(-) (11)	NA	Q3ECP6	GDSL esterase/lipase At1g54790	AT1G54790.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os05g33270.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g139630.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.30760.1.A1_at	A	A1TS	POPTR_0006s04920	POPTR_0006s04920 (11)	scaffold_6:3438883-3439191(+) (11)	NA	Q24K02	Insulin-degrading enzyme	AT2G41790.1	Insulinase (Peptidase family M16) family protein 	LOC_Os07g38270.1	"insulin-degrading enzyme, putative, expressed"	Medtr5g102730.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.30760.1.A1_s_at	A	A1TS	POPTR_0006s04920	POPTR_0006s04920 (11)	scaffold_6:3438859-3439035(+) (11)	NA	Q24K02	Insulin-degrading enzyme	AT2G41790.1	Insulinase (Peptidase family M16) family protein 	LOC_Os07g38270.1	"insulin-degrading enzyme, putative, expressed"	Medtr5g102730.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.30771.1.A1_at	A	A1TS	POPTR_0004s15090	POPTR_0004s15090 (10)	scaffold_4:15759893-15760168(+) (10)	NA	NA	NA	AT2G15760.1	Protein of unknown function (DUF1645) 	LOC_Os11g44920.1	expressed protein	Medtr4g129240.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30772.1.A1_at	A	A1TS	POPTR_0008s12920	POPTR_0008s12920 (10)	scaffold_8:8417257-8418127(+) (10)	NA	Q54R62	Uridine-cytidine kinase C	AT2G01460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g21110.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30775.1.A1_at	A	A1MS	POPTR_0022s00330	POPTR_0022s00330 (11)	scaffold_22:70636-71069(-) (11)	NA	Q8BMJ2	"Leucyl-tRNA synthetase, cytoplasmic"	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os09g32650.1	"leucyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr7g006010.1	"Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.30792.1.A1_at	A	A1TS	POPTR_0018s01790	POPTR_0018s01790 (10)	scaffold_18:1633467-1633799(-) (10)	NA	Q8LF20	Putative clathrin assembly protein At2g25430	AT2G25430.1	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr3g137180.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.30798.1.A1_at	A	A1TS	POPTR_0008s15310	POPTR_0008s15310 (11)	scaffold_8:10209414-10209962(-) (11)	NA	P00252	Ferredoxin-1	AT4G14890.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os03g45710.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr5g006400.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.308.1.A1_a_at	A	A1TS	POPTR_0014s13660	POPTR_0014s13660 (11)	scaffold_14:10014386-10014619(-) (11)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.308.2.A1_x_at	A	A1TS	POPTR_0014s13660	POPTR_0014s13660 (11)	scaffold_14:10014319-10014851(-) (11)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.308.3.S1_a_at	A	A2TS	POPTR_0008s00580	POPTR_0008s00580 (11)//POPTR_0010s25970 (11)	scaffold_10:21383464-21383967(+) (11)//scaffold_8:239658-240090(-) (11)	NA	Q9LDU6	7-dehydrocholesterol reductase	AT1G50430.1	Ergosterol biosynthesis ERG4/ERG24 family 	LOC_Os02g26650.2	"delta14-sterol reductase, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.308.3.S1_at	A	A1TS	POPTR_0010s25970	POPTR_0010s25970 (11)	scaffold_10:21383239-21384236(+) (11)	NA	Q9LDU6	7-dehydrocholesterol reductase	AT1G50430.1	Ergosterol biosynthesis ERG4/ERG24 family 	LOC_Os02g26650.2	"delta14-sterol reductase, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.308.4.A1_at	A	A1TS	POPTR_0008s00580	POPTR_0008s00580 (11)	scaffold_8:239220-240018(-) (11)	NA	Q9LDU6	7-dehydrocholesterol reductase	AT1G50430.1	Ergosterol biosynthesis ERG4/ERG24 family 	LOC_Os02g26650.2	"delta14-sterol reductase, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.308.5.S1_s_at	A	A2TS	POPTR_0003s06480	POPTR_0003s06480 (11)//POPTR_0003s06510 (11)	scaffold_3:7975920-7976437(-) (11)//scaffold_3:7994920-7995437(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G06900.1	"cytochrome P450, family 93, subfamily D, polypeptide 1 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.308.6.A1_s_at	A	A1TS	POPTR_0014s13660	POPTR_0014s13660 (9)	scaffold_14:10015695-10015727(-) (9)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.30804.1.A1_at	A	A1TS	POPTR_0006s22620	POPTR_0006s22620 (10)	scaffold_6:21578056-21579145(+) (10)	NA	Q13596	Sorting nexin-1	AT5G06140.1	sorting nexin 1 	LOC_Os01g64280.1	"sorting nexin 1, putative, expressed"	Medtr5g081470.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.30807.1.A1_at	A	A1TS	POPTR_0007s03370	POPTR_0007s03370 (10)	scaffold_7:1946049-1946472(+) (10)	NA	NA	NA	AT5G09520.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3081.1.S1_at	A	A1TS	POPTR_0002s13010	POPTR_0002s13010 (11)	scaffold_2:9661629-9662065(-) (11)	NA	P34422	Dipeptidyl peptidase family member 6	AT5G36210.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g11180.1	"OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr3g068350.1	"Peptidase S9, prolyl oligopeptidase active site region "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.30817.1.S1_s_at	A	A1TS	POPTR_0006s13910	POPTR_0006s13910 (11)	scaffold_6:11101103-11102223(-) (11)	NA	Q40863	Embryogenesis-associated protein EMB8	AT2G03140.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g26570.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr8g133150.1	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.30830.2.A1_a_at	A	A1TS	POPTR_0008s07260	POPTR_0008s07260 (11)	scaffold_8:4422689-4423757(-) (11)	NA	Q9Z2L6	Multiple inositol polyphosphate phosphatase 1	AT1G09870.1	histidine acid phosphatase family protein 	LOC_Os03g60370.1	"histidine acid phosphatase, putative, expressed"	Medtr3g094770.1	Histidine acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.30835.1.A1_at	A	A1TS	POPTR_0018s10550	POPTR_0018s10550 (9)	scaffold_18:11460390-11460800(+) (9)//scaffold_678:9577-9987(-) (9)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.30837.1.A1_at	A	A1TA	POPTR_0009s04061	POPTR_0009s04061 (10)	scaffold_9:4592034-4606111(-) (10)	POPTR_0009s04080 (7)	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G53810.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44900.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30839.1.A1_at	A	A1TS	POPTR_0018s13170	POPTR_0018s13170 (11)	scaffold_18:13603845-13604719(+) (10)	POPTR_0006s06910 (6)	NA	NA	AT2G41475.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr2g126300.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3084.1.S1_at	A	A1TS	POPTR_0005s11860	POPTR_0005s11860 (11)	scaffold_5:8620002-8620519(+) (11)	NA	P40267	Histone H1	AT2G18050.1	histone H1-3 	LOC_Os06g04020.1	"histone H1, putative, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.3084.2.A1_a_at	A	A1TS	POPTR_0004s20120	POPTR_0004s20120 (11)	scaffold_4:19772275-19772492(-) (11)	NA	Q6D2F1	Bifunctional polymyxin resistance protein ArnA	AT1G08200.1	UDP-D-apiose/UDP-D-xylose synthase 2 	LOC_Os01g73790.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g137650.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.3084.5.A1_a_at	A	A1TS	POPTR_0004s20120	POPTR_0004s20120 (11)	scaffold_4:19772287-19772492(-) (11)	NA	Q6D2F1	Bifunctional polymyxin resistance protein ArnA	AT1G08200.1	UDP-D-apiose/UDP-D-xylose synthase 2 	LOC_Os01g73790.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g137650.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.30842.1.A1_at	A	A1TS	POPTR_0011s13900	POPTR_0011s13900 (9)	scaffold_11:16513483-16514003(-) (9)	NA	NA	NA	AT3G21710.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g097230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30843.1.A1_s_at	A	A1TS	POPTR_0016s07650	POPTR_0016s07650 (11)	scaffold_16:5483582-5484007(-) (11)	NA	O82039	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	AT3G11540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44510.1	"UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30845.1.A1_at	A	A1TS	POPTR_0002s16310	POPTR_0002s16310 (10)	scaffold_2:12196665-12197067(+) (10)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT4G00330.1	calmodulin-binding receptor-like cytoplasmic kinase 2 	LOC_Os03g05470.1	"tyrosine protein kinase domain containing protein, putative, expressed"	AC235567_9.1	"Serine/threonine protein kinase, active site AC235567.1 39723-36116 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30856.1.A1_at	A	A1TS	POPTR_0012s03860	POPTR_0012s03860 (11)	scaffold_12:3087531-3088074(-) (11)	NA	O35678	Monoglyceride lipase	AT1G73480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g23150.1	"monoglyceride lipase, putative, expressed"	Medtr3g130390.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3086.1.A1_at	A	A1TS	POPTR_0009s04450	POPTR_0009s04450 (11)	scaffold_9:4823685-4823971(-) (11)	NA	Q9ZW33	Mitochondrial import inner membrane translocase subunit Tim10	AT2G29530.2	Tim10/DDP family zinc finger protein 	LOC_Os03g61019.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr2g117410.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
PtpAffx.3087.1.A1_s_at	A	A1TS	POPTR_0001s04970	POPTR_0001s04970 (11)	scaffold_1:3813104-3814318(-) (11)	NA	Q9LXT9	Callose synthase 3	AT5G13000.1	glucan synthase-like 12 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.3087.2.A1_s_at	A	A1TS	POPTR_0003s21690	POPTR_0003s21690 (11)	scaffold_3:19746055-19746147(-) (11)	NA	Q9LXT9	Callose synthase 3	AT5G13000.1	glucan synthase-like 12 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr7g005640.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.30871.1.A1_s_at	A	A1TS	POPTR_0005s21960	POPTR_0005s21960 (10)	scaffold_5:20981157-20982429(-) (10)	NA	A6QP05	Dehydrogenase/reductase SDR family member 12	AT4G09750.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g39040.1	"dehydrogenase/reductase SDR family member 12, putative, expressed"	Medtr6g035840.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.30871.2.A1_s_at	A	A1TS	POPTR_0005s21960	POPTR_0005s21960 (11)	scaffold_5:20983205-20984013(-) (11)	NA	A6QP05	Dehydrogenase/reductase SDR family member 12	AT4G09750.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g39040.1	"dehydrogenase/reductase SDR family member 12, putative, expressed"	Medtr6g035840.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.30872.1.A1_at	A	A1TS	POPTR_0005s15120	POPTR_0005s15120 (11)	scaffold_5:11925498-11925959(+) (11)//scaffold_709:2-463(-) (11)//scaffold_709:6060-6524(-) (9)	POPTR_0709s00200 (8)//POPTR_0709s00210 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30875.1.S1_at	A	A1TS	POPTR_0008s06990	POPTR_0008s06990 (11)	scaffold_8:4233256-4233718(+) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30876.1.A1_at	A	A1TS	POPTR_0006s26710	POPTR_0006s26710 (11)	scaffold_6:24843325-24843830(+) (11)	NA	A2AR02	Peptidyl-prolyl cis-trans isomerase G	AT4G32420.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr1g013450.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.30879.1.A1_s_at	A	A1TS	POPTR_0010s01690	POPTR_0010s01690 (10)	scaffold_10:1873132-1873232(-) (10)	NA	Q6ZQK0	Condensin-2 complex subunit D3	AT4G15890.1	binding 	LOC_Os12g36170.1	"HEAT repeat family protein, putative, expressed"	Medtr7g134000.1	"Condensin-2 complex subunit D3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30880.2.S1_at	A	A1TS	POPTR_0004s20040	POPTR_0004s20040 (11)	scaffold_4:19681616-19681967(-) (11)	NA	Q9FNI7	Glucomannan 4-beta-mannosyltransferase 2	AT5G22740.1	cellulose synthase-like A02 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr4g073490.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30881.1.A1_at	A	A1TS	POPTR_0009s02570	POPTR_0009s02570 (11)	scaffold_9:3355624-3356092(+) (11)	NA	Q8BZ36	RAD50-interacting protein 1	AT1G08400.1	RINT-1 / TIP-1 family 	LOC_Os07g48720.1	"MAG2, putative, expressed"	Medtr7g065190.1	Lipocalin; RINT-1/TIP-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30887.1.A1_at	A	A1TS	POPTR_0006s08170	POPTR_0006s08170 (11)	scaffold_6:5937826-5938088(-) (11)	NA	Q93ZD7	Magnesium transporter MRS2-4	AT3G58970.1	magnesium transporter 6 	LOC_Os10g39790.2	"CorA-like magnesium transporter protein, putative, expressed"	Medtr4g137240.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3089.1.S1_at	A	A1TS	POPTR_0010s11130	POPTR_0010s11130 (11)	scaffold_10:11472359-11473103(-) (11)	NA	Q9LKW9	Sodium/hydrogen exchanger 7	AT2G01980.1	"sodium proton exchanger, putative (NHX7) (SOS1) "	LOC_Os12g44360.2	"sodium/hydrogen exchanger 7, putative, expressed"	Medtr2g043140.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.309.2.S1_a_at	A	A2TS	POPTR_0001s37480	POPTR_0001s37480 (11)//POPTR_0001s37490 (9)	scaffold_1:36454190-36454539(-) (11)//scaffold_1:36461482-36461736(-) (9)	NA	Q94EG9	Zinc transporter 11	AT1G55910.1	zinc transporter 11 precursor 	LOC_Os03g29850.1	"metal cation transporter, putative, expressed"	Medtr2g117090.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.309.5.A1_a_at	A	A2TS	POPTR_0001s37480	POPTR_0001s37490 (11)//POPTR_0001s37480 (11)	scaffold_1:36453014-36453049(-) (11)//scaffold_1:36459300-36459335(-) (11)	NA	Q94EG9	Zinc transporter 11	AT1G55910.1	zinc transporter 11 precursor 	LOC_Os03g29850.1	"metal cation transporter, putative, expressed"	Medtr2g117090.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.309.5.A1_at	A	A1TS	POPTR_0001s37490	POPTR_0001s37490 (11)	scaffold_1:36452990-36459150(-) (11)	NA	Q94EG9	Zinc transporter 11	AT1G55910.1	zinc transporter 11 precursor 	LOC_Os03g29850.1	"metal cation transporter, putative, expressed"	Medtr2g117090.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.30903.1.A1_at	A	A1TS	POPTR_0006s04420	POPTR_0006s04420 (11)	scaffold_6:3010387-3010875(+) (11)	NA	P0CD61	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase	AT3G57220.1	Glycosyl transferase family 4 protein 	LOC_Os07g46640.1	"UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30904.1.A1_at	A	A1TS	POPTR_0016s14530	POPTR_0016s14530 (11)	scaffold_16:13737135-13737683(+) (11)	NA	Q39030	Serine/threonine-protein kinase AtPK2/AtPK19	AT3G08720.2	serine/threonine protein kinase 2 	LOC_Os03g21620.1	"AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30909.1.A1_at	A	A1MS	POPTR_0004s14060	POPTR_0004s14060 (11)	scaffold_4:14531237-14531535(+) (11)	NA	NA	NA	AT4G18400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g39594.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3091.1.A1_at	A	A1TS	POPTR_0015s03100	POPTR_0015s03100 (11)	scaffold_15:2619958-2620484(+) (11)	NA	NA	NA	AT1G73960.1	TBP-associated factor 2 	LOC_Os09g24440.1	expressed protein	Medtr8g119110.1	"TAF2 ; metallopeptidase/ zinc, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30910.1.A1_at	A	A1TS	POPTR_0016s05790	POPTR_0016s05790 (10)	scaffold_16:3722572-3723026(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30911.1.A1_at	A	A1MS	POPTR_0018s08030	POPTR_0018s08030 (11)	scaffold_18:8813149-8813433(+) (11)	NA	NA	NA	AT2G25800.1	Protein of unknown function (DUF810) 	LOC_Os09g17760.1	expressed protein	Medtr3g130600.1	Munc13 homology 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30912.1.A1_at	A	A1MS	POPTR_0003s20070	POPTR_0003s20070 (11)	scaffold_3:18671290-18671519(+) (11)	NA	NA	NA	AT1G29050.1	TRICHOME BIREFRINGENCE-LIKE 38 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g021900.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30919.1.A1_s_at	A	A1TS	POPTR_0006s02790	POPTR_0006s02790 (11)	scaffold_6:1767518-1767814(+) (11)	NA	Q8N1B4	Vacuolar protein sorting-associated protein 52 homolog	AT1G71270.1	Vps52 / Sac2 family  	LOC_Os03g30460.1	"vacuolar protein sorting-associated protein 52, putative, expressed"	Medtr1g093340.1	Vps52/Sac2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30927.1.A1_at	A	A1TS	POPTR_0012s14570	POPTR_0012s14570 (11)	scaffold_12:14420231-14420727(-) (11)	NA	P17407	21 kDa protein	AT4G25250.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010170.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.3093.1.S1_at	A	A1TS	POPTR_0014s15700	POPTR_0014s15700 (11)	scaffold_14:11719577-11719907(+) (11)	NA	NA	NA	AT4G03965.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g147420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30933.1.A1_at	A	A1TS	POPTR_0015s04700	POPTR_0015s04700 (11)	scaffold_15:4923263-4924288(-) (11)	NA	P93008	DEAD-box ATP-dependent RNA helicase 21	AT2G33730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g50090.4	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	AC233669_14.1	"Helicase, C-terminal; ; AC233669.2 54226-56692 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.30938.1.A1_s_at	A	A1TS	POPTR_0007s11030	POPTR_0007s11030 (9)	scaffold_7:11300715-11301023(+) (11)	NA	P22335	Heat shock factor protein HSF24	AT4G36990.1	heat shock factor 4 	LOC_Os09g35790.2	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g017450.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.30939.1.A1_at	A	A1TS	POPTR_0003s12710	POPTR_0003s12710 (11)	scaffold_3:13219911-13220429(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30944.1.A1_at	A	A1TS	POPTR_0007s09480	POPTR_0007s09480 (11)	scaffold_7:8882946-8883470(+) (11)	NA	Q9UTK2	"60S ribosomal protein L19, mitochondrial"	AT4G35490.1	mitochondrial ribosomal protein L11 	LOC_Os10g32870.1	"L11 domain containing ribosomal protein, putative, expressed"	Medtr3g109450.1	Ribosomal protein L11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.30945.1.S1_at	A	A1TS	POPTR_0004s10500	POPTR_0004s10500 (10)	scaffold_4:9037503-9038060(-) (10)	NA	Q9UT45	"Endo-1,3(4)-beta-glucanase 1"	AT5G15870.1	glycosyl hydrolase family 81 protein 	LOC_Os09g21210.1	"beta-glucan-binding protein 4, putative, expressed"	AC233572_8.1	"Glycoside hydrolase, family 81 AC233572.2 39595-41951 E EGN_Mt090430 200"	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	"GO:0033903|""endo-1,3(4)-beta-glucanase activity"""	NA
PtpAffx.30949.1.S1_at	A	A1TS	POPTR_0006s05800	POPTR_0006s05800 (11)	scaffold_6:4101484-4103355(+) (11)	NA	A1L0Z4	TBCC domain-containing protein 1	AT3G57890.1	Tubulin binding cofactor C domain-containing protein 	LOC_Os06g41110.1	"tubulin binding cofactor C, putative, expressed"	Medtr7g111480.1	Tubulin binding cofactor C 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30949.2.A1_a_at	A	A1TS	POPTR_0006s05800	POPTR_0006s05800 (11)	scaffold_6:4103406-4103446(+) (11)	NA	A1L0Z4	TBCC domain-containing protein 1	AT3G57890.1	Tubulin binding cofactor C domain-containing protein 	LOC_Os06g41110.1	"tubulin binding cofactor C, putative, expressed"	Medtr7g111480.1	Tubulin binding cofactor C 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30951.1.A1_at	A	A1TS	POPTR_0004s18570	POPTR_0004s18570 (11)	scaffold_4:18420509-18420705(-) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g092470.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30954.1.S1_at	A	A1TS	POPTR_0012s07970	POPTR_0012s07970 (11)	scaffold_12:8958883-8959359(-) (11)	NA	NA	NA	AT5G14890.1	NHL domain-containing protein 	LOC_Os02g50940.1	"NHL repeat-containing protein, putative, expressed"	Medtr8g125480.1	"IS10 transposase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30956.1.A1_at	A	A1TS	POPTR_0012s14350	POPTR_0012s14350 (11)	scaffold_12:14281415-14281937(+) (11)	NA	NA	NA	AT5G62260.1	AT hook motif DNA-binding family protein 	LOC_Os08g02490.1	"AT hook motif domain containing protein, expressed"	Medtr7g034750.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
PtpAffx.30957.1.A1_at	A	A1TS	POPTR_0011s10150	POPTR_0011s10150 (10)	scaffold_11:12628485-12628610(+) (11)//scaffold_11:12647038-12647174(+) (11)//scaffold_11:12658158-12658273(+) (10)//scaffold_11:12674683-12682096(+) (10)//scaffold_11:12736117-12736242(+) (11)//scaffold_11:12759186-12759311(+) (11)	POPTR_0011s10300 (8)//POPTR_0011s10180 (8)	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43700.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.3096.2.S1_a_at	A	A2TS	POPTR_0006s25080	POPTR_0018s04720 (9)//POPTR_0006s25080 (9)	scaffold_18:4068129-4068161(-) (9)//scaffold_6:23532941-23532973(-) (9)	NA	Q9M0G2	Zinc finger CCCH domain-containing protein 49	AT4G29190.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g09620.2	"zinc finger/CCCH transcription factor, putative, expressed"	Medtr4g160380.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.3096.2.S1_s_at	A	A1TS	POPTR_0018s04720	POPTR_0018s04720 (11)	scaffold_18:4067727-4068251(-) (11)	NA	Q9M0G2	Zinc finger CCCH domain-containing protein 49	AT4G29190.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g09620.2	"zinc finger/CCCH transcription factor, putative, expressed"	Medtr4g160380.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.30967.1.S1_a_at	A	A2TS	POPTR_0001s15820	POPTR_0001s15820 (10)//POPTR_0003s07450 (10)	scaffold_1:12652833-12652908(-) (10)//scaffold_3:9008314-9008389(+) (10)	NA	NA	NA	AT4G16600.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os04g46750.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g105780.1	"Glycosyl transferase, family 8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30967.1.S1_at	A	A1TS	POPTR_0001s15820	POPTR_0001s15820 (11)	scaffold_1:12652499-12652994(-) (11)	NA	NA	NA	AT4G16600.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os04g46750.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g105780.1	"Glycosyl transferase, family 8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30967.2.A1_at	A	A1TS	POPTR_0003s07450	POPTR_0003s07450 (11)	scaffold_3:9008185-9008706(+) (11)	NA	O15488	Glycogenin-2	AT4G16600.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os04g46750.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g105780.1	"Glycosyl transferase, family 8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30967.3.S1_at	A	A1TS	POPTR_0001s15820	POPTR_0001s15820 (11)	scaffold_1:12654280-12656679(-) (11)	NA	NA	NA	AT4G16600.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os04g46750.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g105780.1	"Glycosyl transferase, family 8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30967.4.A1_at	A	A1TA	POPTR_0001s15820	POPTR_0001s15820 (11)	scaffold_1:12653875-12653994(+) (11)	NA	NA	NA	AT4G16600.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os04g46750.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g105780.1	"Glycosyl transferase, family 8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30969.1.S1_at	A	A1TS	POPTR_0005s15020	POPTR_0005s15020 (10)	scaffold_5:11844912-11846592(+) (11)	NA	Q6C253	Mitochondrial inner membrane protease ATP23	AT3G03420.1	Ku70-binding family protein 	LOC_Os12g19090.1	"metalloprotease ATP23, putative, expressed"	Medtr8g025200.1	"Mitochondrial inner membrane protease atp23, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30973.1.S1_at	A	A1MS	POPTR_0015s00620	POPTR_0015s00620 (11)	scaffold_15:374026-374361(-) (11)	NA	NA	NA	AT5G24580.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g64340.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g122410.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.30981.1.A1_at	A	A1TS	POPTR_0004s24130	POPTR_0004s24130 (11)	scaffold_4:22862012-22862223(-) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT4G25160.1	U-box domain-containing protein kinase family protein 	LOC_Os06g04880.1	"serine threonine kinase, putative, expressed"	Medtr3g009640.1	Protein kinase; U box 	GO:0006950|response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.30993.1.A1_a_at	A	A1MA	POPTR_0007s04390	POPTR_0007s04390 (11)	scaffold_7:2722435-2723042(-) (11)//scaffold_7:2722601-2722908(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30998.1.A1_at	A	A1TS	POPTR_0001s15970	POPTR_0001s15970 (10)	scaffold_1:12799258-12799774(+) (10)	NA	A7HHM9	Urease accessory protein ureD	AT2G35035.1	urease accessory protein D 	LOC_Os02g07670.1	"URED, putative, expressed"	NA	NA	GO:0006807|nitrogen compound metabolic process	GO:0016151|nickel ion binding	NA
PtpAffx.30999.1.A1_at	A	A1MS	POPTR_0004s07890	POPTR_0004s07890 (10)	scaffold_4:6447567-6449589(-) (11)	NA	Q54BW6	Tetratricopeptide repeat protein 27 homolog	AT5G17270.1	Protein prenylyltransferase superfamily protein 	LOC_Os07g27180.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g151900.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31.1.S1_at	A	A1TS	POPTR_0012s07390	POPTR_0012s07390 (9)	scaffold_12:8325201-8325821(+) (9)	NA	Q9STS6	LOB domain-containing protein 27	AT3G47870.1	LOB domain-containing protein 27 	LOC_Os08g31080.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3103.1.A1_s_at	A	A1TS	POPTR_0007s01450	POPTR_0007s01450 (11)	scaffold_7:816814-817002(+) (11)	NA	Q9STF9	Pentatricopeptide repeat-containing protein At3g46870	AT5G09320.1	Vacuolar sorting protein 9 (VPS9) domain 	LOC_Os07g36450.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g120590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31038.1.A1_at	A	A1TS	POPTR_0013s08430	POPTR_0013s08430 (11)	scaffold_13:7557062-7565138(-) (11)	NA	Q9ZVN4	Probable tyrosine-protein phosphatase At1g05000	AT3G02800.1	Tyrosine phosphatase family protein 	LOC_Os12g23190.1	"tyrosine phosphatase family protein, putative, expressed"	Medtr7g089590.1	Tyrosine specific protein phosphatase and dual specificity protein phosphatase; Putative tyrosine phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31053.1.A1_at	A	A1TS	POPTR_0007s02520	POPTR_0007s02520 (11)	scaffold_7:1490627-1490825(-) (11)	NA	O48650	Protein translation factor SUI1 homolog	AT4G27130.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.2	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.31053.1.A1_s_at	A	A1TS	POPTR_0007s02520	POPTR_0007s02520 (11)	scaffold_7:1490532-1490776(-) (11)	NA	O48650	Protein translation factor SUI1 homolog	AT4G27130.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.2	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.31053.2.A1_at	A	A1TS	POPTR_0007s02530	POPTR_0007s02530 (9)	scaffold_7:1496381-1496594(-) (9)	NA	O48650	Protein translation factor SUI1 homolog	AT4G27130.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.2	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.31063.1.S1_at	A	A1TS	POPTR_0015s12080	POPTR_0015s12080 (9)	scaffold_15:12495052-12496236(-) (9)	NA	Q863B3	Staphylococcal nuclease domain-containing protein 1	AT5G07350.1	TUDOR-SN protein 1 	LOC_Os02g32350.2	"TUDOR protein with multiple SNc domains, putative, expressed"	Medtr3g151500.1	Tudor; Staphylococcus nuclease subtype 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds""||GO:0003676|nucleic acid binding"	NA
PtpAffx.31067.1.A1_at	A	A1TS	POPTR_0002s07680	POPTR_0002s07680 (11)	scaffold_2:5235070-5258834(-) (11)	NA	NA	NA	AT1G21510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; Has 380 Blast hits to 286 proteins in 63 species: Archae - 0; Bacteria - 6; Metazoa - 254; Fungi - 44; Plants - 13; Viruses - 5; Other Eukaryotes - 58 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31077.1.A1_at	A	A1TS	POPTR_0001s23520	POPTR_0001s23520 (10)	scaffold_1:22911114-22911310(+) (11)	NA	Q86HW6	Probable serine/threonine-protein kinase DDB_G0276461	AT2G32850.2	Protein kinase superfamily protein 	LOC_Os02g37880.3	"cyclin G-associated kinase, putative, expressed"	Medtr8g115300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.31079.1.A1_at	A	A1TS	POPTR_0009s05200	POPTR_0009s05200 (11)	scaffold_9:5346026-5347047(-) (11)	NA	Q6CFJ0	Mitochondria fission 1 protein	AT3G57090.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g31770.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr7g107260.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31085.2.S1_a_at	A	A1TS	POPTR_0001s33380	POPTR_0001s33380 (11)	scaffold_1:31564145-31564730(+) (11)	NA	NA	NA	AT5G41050.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os09g32988.1	"POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr7g148430.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31085.3.A1_s_at	A	A1TS	POPTR_0017s09980	POPTR_0017s09980 (11)	scaffold_17:8801073-8801374(-) (11)	NA	NA	NA	AT5G41050.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os09g32988.1	"POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr7g148430.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31086.1.A1_at	A	A1TS	POPTR_0005s10740	POPTR_0005s10740 (11)	scaffold_5:7707853-7708390(+) (11)	NA	Q3EBZ2	F-box protein SKIP23	AT2G17030.1	F-box family protein with a domain of unknown function (DUF295) 	NA	NA	Medtr8g088880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31091.1.S1_at	A	A1TS	POPTR_0007s08470	POPTR_0007s08470 (11)	scaffold_7:7323174-7323833(+) (11)	NA	Q9Y4C4	Malignant fibrous histiocytoma-amplified sequence 1	AT4G35470.1	plant intracellular ras group-related LRR 4 	LOC_Os08g40090.1	"leucine rich repeat containing protein, expressed"	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.31094.1.A1_s_at	A	A1TS	POPTR_0003s01440	POPTR_0003s01440 (9)	scaffold_3:1333442-1333587(-) (9)	NA	Q8VYI9	Non-specific lipid-transfer protein-like protein At5g64080	AT5G64080.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g09230.1	"LTPL69 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g078840.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3110.2.S1_at	A	A1TS	POPTR_0004s00650	POPTR_0004s00650 (11)	scaffold_4:256906-257804(+) (11)	NA	P46608	Homeobox protein SBH1	AT1G62360.1	KNOX/ELK homeobox transcription factor 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g093180.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.31119.1.A1_at	A	A1TS	POPTR_0002s16140	POPTR_0002s16140 (10)	scaffold_2:12046118-12047548(-) (10)	NA	Q75RY2	Protein PAIR1	AT1G01690.1	putative recombination initiation defects 3 	LOC_Os03g01590.2	"PAIR1, putative, expressed"	Medtr8g032000.1	"Protein PAIR1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31126.1.A1_at	A	A1TS	POPTR_0006s03120	POPTR_0006s03120 (10)	scaffold_6:1984632-1984823(+) (10)	NA	Q94KK7	Syntaxin-52	AT1G79590.2	syntaxin of plants 52 	LOC_Os08g17600.2	"SNARE domain containing protein, putative, expressed"	Medtr3g076210.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31126.2.A1_a_at	A	A1MS	POPTR_0006s03120	POPTR_0006s03120 (9)	scaffold_6:1983835-1984630(+) (11)	NA	Q94KK7	Syntaxin-52	AT1G79590.2	syntaxin of plants 52 	LOC_Os08g17600.2	"SNARE domain containing protein, putative, expressed"	Medtr3g076210.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31135.1.A1_at	A	A1TS	POPTR_0003s16000	POPTR_0003s16000 (11)	scaffold_3:15638110-15639222(+) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G38895.2	RING/U-box superfamily protein 	LOC_Os01g70160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31140.1.A1_at	A	A1TS	POPTR_0001s38680	POPTR_0001s38680 (9)	scaffold_1:37856142-37859191(+) (11)	NA	NA	NA	AT3G14450.1	CTC-interacting domain 9 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31141.1.A1_s_at	A	A1TS	POPTR_0008s11140	POPTR_0008s11140 (11)	scaffold_8:7049602-7050097(+) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT2G03890.1	phosphoinositide 4-kinase gamma 7 	LOC_Os06g17290.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr8g077330.1	"Phosphatidylinositol 3- and 4-kinase, catalytic "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.31146.1.A1_at	A	A1MS	POPTR_0002s00910	POPTR_0002s00910 (11)	scaffold_2:428011-428426(-) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os12g17900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.31149.1.A1_at	A	A1TS	POPTR_0003s16730	POPTR_0003s16730 (11)	scaffold_3:16263358-16263901(+) (11)	NA	Q9Y222	Cyclin-D-binding Myb-like transcription factor 1	AT5G41020.1	myb family transcription factor 	LOC_Os06g19980.1	"MYB family transcription factor, putative, expressed"	Medtr8g093700.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31151.1.A1_at	A	A1TS	POPTR_0014s04500	POPTR_0014s04500 (11)	scaffold_14:3484131-3484612(+) (11)	NA	Q86BN8	Protein-tyrosine phosphatase mitochondrial 1-like protein	AT2G35680.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os10g41240.1	"dual specificity protein phosphatase, putative, expressed"	Medtr8g105260.2	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.31157.1.A1_at	A	A1TS	POPTR_0001s02400	POPTR_0001s02400 (11)	scaffold_1:1837813-1838320(+) (11)	NA	NA	NA	AT1G32690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35200.1); Has 45 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g030040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31161.1.S1_a_at	A	A1TS	POPTR_0007s03200	POPTR_0007s03200 (11)	scaffold_7:1841550-1841827(+) (11)	NA	NA	NA	AT4G33625.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os07g02710.1	expressed protein	Medtr2g009650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31161.2.S1_at	A	A1MS	POPTR_0007s03200	POPTR_0007s03200 (11)	scaffold_7:1841258-1841784(+) (11)	NA	NA	NA	AT4G33625.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os07g02710.1	expressed protein	Medtr2g009650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31165.1.S1_at	A	A1TS	POPTR_0013s15200	POPTR_0013s15200 (11)	scaffold_13:15213080-15213549(-) (11)	NA	Q9C562	CBL-interacting serine/threonine-protein kinase 10	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g145620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.31172.1.A1_at	A	A1TS	POPTR_0012s13860	POPTR_0012s13860 (11)	scaffold_12:13823784-13824147(+) (11)	NA	NA	NA	AT1G06010.1	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g039520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31179.1.A1_at	A	A1TS	POPTR_0009s05060	POPTR_0009s05060 (9)	scaffold_9:5240738-5241179(+) (10)	NA	NA	NA	AT5G58740.1	HSP20-like chaperones superfamily protein 	LOC_Os01g47770.1	"CS domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31190.1.A1_s_at	A	A1TS	POPTR_0009s01810	POPTR_0009s01810 (11)	scaffold_9:2310294-2312368(-) (11)	NA	Q8LAD0	Pyridoxal biosynthesis protein PDX2	AT5G60540.1	pyridoxine biosynthesis 2 	LOC_Os02g03740.1	"pyridoxal biosynthesis protein PDX2, putative, expressed"	Medtr4g013010.1	SNO glutamine amidotransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31194.1.A1_at	A	A1TS	POPTR_0006s26420	POPTR_0006s26420 (11)	scaffold_6:24631225-24631771(-) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT4G32551.1	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 	LOC_Os01g42260.3	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr3g136270.1	"Lissencephaly type-1-like homology motif; Single-stranded DNA-binding protein, SSDP; WD40-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31202.1.S1_at	A	A1TS	POPTR_0018s12200	POPTR_0018s12200 (11)	scaffold_18:12755595-12756100(+) (11)	NA	P48000	Homeobox protein knotted-1-like 3	AT5G25220.2	KNOTTED1-like homeobox gene 3 	LOC_Os08g19650.2	"homeobox protein knotted-1, putative, expressed"	Medtr3g137900.2	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.31202.2.S1_a_at	A	A1TS	POPTR_0018s12200	POPTR_0018s12200 (11)	scaffold_18:12751903-12752217(+) (11)	NA	P48000	Homeobox protein knotted-1-like 3	AT5G25220.2	KNOTTED1-like homeobox gene 3 	LOC_Os08g19650.2	"homeobox protein knotted-1, putative, expressed"	Medtr3g137900.2	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.31202.2.S1_at	A	A1MS	POPTR_0018s12200	POPTR_0018s12200 (11)	scaffold_18:12752060-12752457(+) (11)	NA	P48000	Homeobox protein knotted-1-like 3	AT5G25220.2	KNOTTED1-like homeobox gene 3 	LOC_Os08g19650.2	"homeobox protein knotted-1, putative, expressed"	Medtr3g137900.2	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.31214.1.S1_at	A	A1TS	POPTR_0014s07260	POPTR_0014s07260 (10)	scaffold_14:5482683-5483233(-) (10)	NA	Q8GWV5	U-box domain-containing protein 3	AT2G45720.2	ARM repeat superfamily protein 	LOC_Os10g37850.1	"armadillo, putative, expressed"	Medtr7g083820.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31220.1.A1_at	A	A1TS	POPTR_0004s04180	POPTR_0004s04180 (11)	scaffold_4:2999874-3000325(-) (11)	NA	NA	NA	AT4G21720.1	unknown protein; Has 2692 Blast hits to 975 proteins in 186 species: Archae - 4; Bacteria - 460; Metazoa - 658; Fungi - 93; Plants - 1089; Viruses - 100; Other Eukaryotes - 288 (source: NCBI BLink). 	LOC_Os04g58380.1	expressed protein	AC233659_27.1	hypothetical protein AC233659.1 111385-114233 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31228.1.A1_at	A	A1TS	POPTR_0001s02750	POPTR_0001s02750 (11)	scaffold_1:2165393-2166448(-) (11)	NA	O82302	Protein phosphatase 2C 29	AT2G35350.1	poltergeist like 1 	LOC_Os02g46490.1	"protein phosphatase 2C, putative, expressed"	Medtr8g102940.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31231.1.S1_a_at	A	A1TS	POPTR_0001s15920	POPTR_0001s15920 (11)	scaffold_1:12772546-12772801(-) (11)	NA	NA	NA	AT1G31040.1	PLATZ transcription factor family protein 	LOC_Os06g45540.1	"zinc-binding protein, putative, expressed"	Medtr8g122390.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.31232.1.A1_at	A	A1MS	POPTR_0009s17180	POPTR_0009s17180 (11)	scaffold_9:12910948-12911369(-) (11)	NA	P93025	Phototropin-2	AT5G58140.1	phototropin 2 	LOC_Os04g23890.3	"AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.31240.1.A1_at	A	A1TS	POPTR_0010s04990	POPTR_0010s04990 (10)	scaffold_10:6269246-6269769(-) (10)	NA	Q74E53	Ribosomal RNA large subunit methyltransferase N	AT1G60230.1	Radical SAM superfamily protein 	LOC_Os01g45370.1	"radical SAM enzyme, putative, expressed"	Medtr5g087280.1	Conserved hypothetical protein 48; Radical SAM 	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.31243.1.A1_at	A	A2TS	POPTR_0004s09580	POPTR_0004s09610 (11)//POPTR_0004s09580 (11)	scaffold_4:8120122-8120483(+) (11)//scaffold_4:8137081-8137442(+) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G66880.1	Protein kinase superfamily protein 	LOC_Os01g49529.1	"OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.31246.1.S1_at	A	A1TS	POPTR_0002s03010	POPTR_0002s03010 (10)	scaffold_2:1877716-1878151(+) (10)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT2G21410.1	vacuolar proton ATPase A2 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.3125.1.A1_a_at	A	A1TS	POPTR_0014s13290	POPTR_0014s13290 (11)	scaffold_14:9792172-9792554(+) (11)	NA	Q9AT00	"Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic"	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os03g46740.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.3125.3.A1_a_at	A	A1TS	POPTR_0002s22890	POPTR_0002s22890 (10)	scaffold_2:19941238-19941512(+) (10)	NA	Q9AT00	"Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic"	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os03g46740.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.3125.3.A1_at	A	A1MS	POPTR_0002s22890	POPTR_0002s22890 (9)	scaffold_2:19941112-19941247(+) (9)	NA	Q9AT00	"Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic"	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os03g46740.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.31257.1.A1_at	A	A1TS	POPTR_0008s22470	POPTR_0008s22470 (11)	scaffold_8:16986288-16986994(-) (11)	NA	NA	NA	AT5G49120.1	Protein of unknown function (DUF581) 	LOC_Os02g37970.1	"DUF581 domain containing protein, expressed"	Medtr8g138510.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3126.1.A1_at	A	A1TS	POPTR_0007s05770	POPTR_0007s05770 (9)	scaffold_7:3920640-3921223(+) (9)	NA	Q5B5X8	"Probable glucan 1,3-beta-glucosidase A"	NA	NA	LOC_Os10g22520.1	"cellulase, putative, expressed"	Medtr3g010410.1	"Glycoside hydrolase, family 5; N-6 Adenine-specific DNA methylase; Actin-crosslinking proteins "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.31264.1.S1_a_at	A	A1TS	POPTR_0003s05810	POPTR_0003s05810 (11)	scaffold_3:7196701-7196874(+) (11)	NA	NA	NA	AT1G15490.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g45960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr2g123630.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31264.4.S1_at	A	A1TS	POPTR_0015s02310	POPTR_0015s02310 (11)	scaffold_15:1637786-1637856(+) (11)	NA	Q8GV05	Transcription factor TRY	AT5G53200.1	Homeodomain-like superfamily protein 	LOC_Os01g43180.1	"MYB family transcription factor, putative"	Medtr5g009470.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31265.1.A1_at	A	A1TS	POPTR_0013s04940	POPTR_0013s04940 (11)	scaffold_13:3455669-3456941(-) (11)	NA	NA	NA	AT5G18310.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g143270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31268.1.A1_at	A	A1TS	POPTR_0005s05730	POPTR_0005s05730 (11)	scaffold_5:3751497-3751889(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g080860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31276.1.A1_at	A	A1TS	POPTR_0011s12140	POPTR_0011s12140 (10)	scaffold_11:14917001-14917455(+) (10)	NA	Q8GUK7	E3 ubiquitin-protein ligase RMA3	AT4G27470.1	RING membrane-anchor 3 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31281.1.A1_at	A	A1MS	POPTR_0018s00510	POPTR_0018s00510 (11)	scaffold_18:447600-447984(-) (11)	NA	Q94FY7	"Tocopherol cyclase, chloroplastic"	AT4G32770.1	"tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) "	LOC_Os02g17650.1	"tocopherol cyclase, chloroplast precursor, putative, expressed"	AC225517_3.1	"Tocopherol cyclase, chloroplast precursor, putative AC225517.6 12507-17093 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31285.1.A1_at	A	A1MS	POPTR_0019s14510	POPTR_0019s14510 (9)	scaffold_19:15283362-15283635(+) (9)	NA	O80915	PRA1 family protein B4	AT2G38360.1	prenylated RAB acceptor 1.B4 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31289.1.A1_at	A	A1TS	POPTR_0005s24840	POPTR_0005s24840 (11)	scaffold_5:23269573-23269827(+) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT2G20470.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.3129.1.S1_s_at	A	A1TS	POPTR_0001s40920	POPTR_0001s40920 (11)	scaffold_1:40489266-40489966(+) (11)	NA	Q45223	3-hydroxybutyryl-CoA dehydrogenase	AT3G15290.1	3-hydroxyacyl-CoA dehydrogenase family protein 	LOC_Os01g58380.1	"3-hydroxybutyryl-CoA dehydrogenase, putative, expressed"	Medtr6g093570.1	3-hydroxyacyl-CoA dehydrogenase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.31290.1.A1_at	A	A1TS	POPTR_0001s38140	POPTR_0001s38140 (11)	scaffold_1:37224347-37225048(+) (11)	NA	O80831	Beta-amylase 7	AT2G45880.1	beta-amylase 7 	LOC_Os02g03690.1	"beta-amylase, putative, expressed"	Medtr5g026370.3	"Glycoside hydrolase, family 14; BZR1, transcriptional repressor; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31291.1.A1_at	A	A1TS	POPTR_0016s00770	POPTR_0016s00770 (11)	scaffold_16:285487-285869(+) (11)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.31292.1.S1_a_at	A	A1TS	POPTR_0004s19660	POPTR_0004s19660 (11)	scaffold_4:19433505-19433828(-) (11)	NA	Q07864	DNA polymerase epsilon catalytic subunit A	AT1G08260.1	DNA polymerase epsilon catalytic subunit 	LOC_Os02g30800.1	"POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed"	Medtr4g073050.1	"Aminotransferase, class-II; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003887|DNA-directed DNA polymerase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.31296.1.S1_s_at	A	A1TS	POPTR_0001s22320	POPTR_0001s22320 (11)	scaffold_1:20943270-20943656(+) (11)	NA	Q9SJF0	Serine/threonine-protein phosphatase BSL2	AT1G08420.1	BRI1 suppressor 1 (BSU1)-like 2 	LOC_Os12g42310.1	"serine/threonine-protein phosphatase BSL2, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.31297.1.A1_at	A	A1TS	POPTR_0009s12190	POPTR_0009s12190 (11)	scaffold_9:9975452-9982246(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT3G50930.1	cytochrome BC1 synthesis 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.31300.1.S1_at	A	A1TS	POPTR_0006s22620	POPTR_0006s22620 (11)	scaffold_6:21575316-21577340(+) (11)	NA	Q13596	Sorting nexin-1	AT5G06140.1	sorting nexin 1 	LOC_Os01g64280.1	"sorting nexin 1, putative, expressed"	Medtr5g081470.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.31301.2.A1_a_at	A	A1TS	POPTR_0015s01300	POPTR_0015s01300 (11)	scaffold_15:815904-818775(-) (11)	NA	NA	NA	AT5G24314.1	plastid transcriptionally active7 	LOC_Os01g50930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31307.1.A1_s_at	A	A1TS	POPTR_0008s11580	POPTR_0008s11580 (11)	scaffold_8:7375817-7376046(+) (11)	NA	C0LGL4	Probable LRR receptor-like serine/threonine-protein kinase At2g28960	AT1G25570.1	Di-glucose binding protein with Leucine-rich repeat domain 	LOC_Os01g04720.1	"leucine-rich repeat protein-related, putative, expressed"	Medtr5g069200.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31308.1.A1_at	A	A1TS	POPTR_0006s26130	POPTR_0006s26130 (11)	scaffold_6:24412709-24413334(+) (11)	NA	Q551A3	Leucine-rich repeat-containing protein DDB_G0276689	AT2G25730.2	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. 	LOC_Os01g40990.3	expressed protein	Medtr3g135820.1	Tetratricopeptide TPR2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31312.1.A1_at	A	A1TS	POPTR_0002s22800	POPTR_0002s22800 (11)	scaffold_2:19746806-19747174(+) (11)	NA	NA	NA	AT4G03090.1	sequence-specific DNA binding;sequence-specific DNA binding transcription factors 	LOC_Os05g09630.1	"homeobox domain containing protein, expressed"	Medtr2g114320.1	Homeobox 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31317.1.A1_at	A	A1TS	POPTR_0006s27040	POPTR_0006s27040 (11)	scaffold_6:25062757-25063180(+) (11)	NA	NA	NA	AT4G32340.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr4g005510.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31318.1.A1_at	A	A1TS	POPTR_0010s05670	POPTR_0010s05670 (11)	scaffold_10:7152314-7152816(-) (11)	NA	Q9FYK5	Ethylene-responsive transcription factor ESR2	AT1G24590.1	DORNROSCHEN-like 	LOC_Os02g38090.1	AP2 domain containing protein	Medtr5g034230.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.31319.1.A1_at	A	A1TS	POPTR_0014s09950	POPTR_0014s09950 (10)	scaffold_14:7469521-7469959(+) (11)	NA	O23090	Transcription factor bHLH14	AT4G00870.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.3132.1.A1_at	A	A1TS	POPTR_0008s03710	POPTR_0008s03710 (11)	scaffold_8:2009014-2009453(-) (11)	NA	Q0IH40	DNL-type zinc finger protein	AT3G54826.1	Zim17-type zinc finger protein 	LOC_Os02g57430.1	"DNL zinc finger domain containing protein, putative, expressed"	Medtr1g120530.1	"Zinc finger, Zim17-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31320.1.A1_s_at	A	A1TS	POPTR_0001s38080	POPTR_0001s38080 (11)	scaffold_1:37119882-37120200(+) (11)	NA	Q41014	"Ferredoxin--NADP reductase, root isozyme, chloroplastic"	AT4G05390.1	root FNR 1 	LOC_Os03g57120.1	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr2g129660.1	Oxidoreductase FAD/NAD(P)-binding 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.31329.1.S1_at	A	A1TS	POPTR_0001s25660	POPTR_0001s25660 (11)	scaffold_1:24720900-24721386(+) (11)	NA	NA	NA	AT1G07300.1	josephin protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31331.2.A1_a_at	A	A1TS	POPTR_0003s19710	POPTR_0003s19710 (11)	scaffold_3:18375672-18376230(+) (11)	POPTR_0001s06430 (6)	O80365	Two-component response regulator ARR8	AT2G41310.1	response regulator 3 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g039500.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.31347.1.A1_at	A	A1TS	POPTR_0007s01110	POPTR_0007s01110 (11)	scaffold_7:602408-602598(-) (11)	NA	Q9FE67	Ethylene-responsive transcription factor 9	AT5G44210.1	erf domain protein 9 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.31353.1.A1_s_at	A	A1TS	POPTR_0001s29490	POPTR_0001s29490 (11)	scaffold_1:28155147-28155685(-) (11)	NA	Q12296	Protein MAM3	AT2G14520.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g47120.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31354.1.A1_at	A	A1TS	POPTR_0001s22680	POPTR_0001s22680 (11)	scaffold_1:21564274-21564722(-) (11)	NA	Q40588	L-ascorbate oxidase	AT5G21105.1	Plant L-ascorbate oxidase 	LOC_Os06g37080.1	"L-ascorbate oxidase precursor, putative, expressed"	AC235679_7.1	Cupredoxin AC235679.1 17434-22822 E EGN_Mt090430 200	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.31355.1.A1_at	A	A1TS	POPTR_0015s08980	POPTR_0015s08980 (11)	scaffold_15:10322222-10323827(+) (11)	NA	NA	NA	AT5G50290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 300 Blast hits to 300 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g33860.1	conserved hypothetical protein	Medtr8g134330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31373.1.A1_at	A	A1TS	POPTR_0010s05180	POPTR_0010s05180 (11)	scaffold_10:6626115-6626282(-) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G60590.1	Pectin lyase-like superfamily protein 	LOC_Os01g44970.1	"polygalacturonase, putative, expressed"	Medtr5g035390.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.31375.2.A1_s_at	A	A1TS	POPTR_0002s10190	POPTR_0002s10190 (11)	scaffold_2:7310279-7311163(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g37760.1	expressed protein	Medtr5g074010.2	"plastid-targeted protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31375.2.A1_x_at	A	A1TS	POPTR_0002s10190	POPTR_0002s10190 (11)	scaffold_2:7310281-7311180(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g37760.1	expressed protein	Medtr5g074010.2	"plastid-targeted protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31375.3.A1_a_at	A	A1TS	POPTR_0008s05600	POPTR_0008s05600 (11)	scaffold_8:3250176-3251598(-) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT3G55430.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.31378.1.A1_s_at	A	A1TS	POPTR_0005s17330	POPTR_0005s17330 (11)	scaffold_5:14652032-14653941(+) (11)	NA	O94581	Cytochrome c oxidase subunit 6B	AT1G22450.1	cytochrome C oxidase 6B 	LOC_Os07g42910.1	"cytochrome c oxidase subunit, putative, expressed"	Medtr5g073800.1	"Cytochrome oxidase c, subunit VIb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
PtpAffx.31378.3.S1_at	A	A1TS	POPTR_0007s03580	POPTR_0007s03580 (11)	scaffold_7:2061705-2062131(-) (11)	NA	Q641C9	Cell division cycle protein 123 homolog	AT4G05440.1	temperature sensing protein-related 	NA	NA	Medtr3g016630.1	D123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31378.4.S1_a_at	A	A1TS	POPTR_0007s03580	POPTR_0007s03580 (11)	scaffold_7:2062556-2062833(-) (11)	NA	Q641C9	Cell division cycle protein 123 homolog	AT4G05440.1	temperature sensing protein-related 	NA	NA	Medtr3g016630.1	D123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31378.5.S1_a_at	A	A1TS	POPTR_0002s10020	POPTR_0002s10020 (11)	scaffold_2:7199982-7200932(+) (11)	NA	O94581	Cytochrome c oxidase subunit 6B	AT1G22450.1	cytochrome C oxidase 6B 	LOC_Os07g42910.1	"cytochrome c oxidase subunit, putative, expressed"	Medtr5g073800.1	"Cytochrome oxidase c, subunit VIb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
PtpAffx.31378.5.S1_at	A	A1MS	POPTR_0002s10020	POPTR_0002s10020 (9)	scaffold_2:7201209-7201345(+) (9)	NA	O94581	Cytochrome c oxidase subunit 6B	AT1G22450.1	cytochrome C oxidase 6B 	LOC_Os07g42910.1	"cytochrome c oxidase subunit, putative, expressed"	Medtr5g073800.1	"Cytochrome oxidase c, subunit VIb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
PtpAffx.31381.1.A1_a_at	A	A1TS	POPTR_0008s13300	POPTR_0008s13300 (11)	scaffold_8:8733863-8733955(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31381.1.A1_at	A	A1TS	POPTR_0008s13300	POPTR_0008s13300 (11)	scaffold_8:8732456-8734133(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31381.2.A1_at	A	A1TS	POPTR_0008s13300	POPTR_0008s13300 (10)	scaffold_8:8733631-8733853(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31386.1.A1_at	A	A1TS	POPTR_0010s21850	POPTR_0010s21850 (11)	scaffold_10:18991637-18992015(+) (11)	NA	NA	NA	AT2G39435.1	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related 	LOC_Os03g17840.1	expressed protein	Medtr7g022720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31409.1.A1_a_at	A	A1TS	POPTR_0001s46170	POPTR_0001s46170 (11)	scaffold_1:46624595-46624932(+) (11)	NA	NA	NA	AT1G04390.1	BTB/POZ domain-containing protein 	LOC_Os06g46240.1	"BTB/POZ domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31416.1.A1_at	A	A1TS	POPTR_0001s18990	POPTR_0001s18990 (11)	scaffold_1:16234302-16237072(+) (11)	NA	P40234	Casein kinase I homolog 2	AT2G25760.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g008170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.31420.1.A1_s_at	A	A1TS	POPTR_0004s05330	POPTR_0004s05330 (11)	scaffold_4:4075894-4075938(+) (11)	NA	P51850	Pyruvate decarboxylase isozyme 1	AT5G54960.1	pyruvate decarboxylase-2 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr2g019000.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.31440.1.A1_a_at	A	A1TS	POPTR_0010s21590	POPTR_0010s21590 (11)	scaffold_10:18805779-18805893(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31440.1.A1_at	A	A1TS	POPTR_0010s21590	POPTR_0010s21590 (11)	scaffold_10:18805735-18806032(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31463.1.S1_a_at	A	A2TS	POPTR_0001s47330	POPTR_0011s16890 (11)//POPTR_0001s47330 (11)	scaffold_1:47560083-47561487(-) (11)//scaffold_11:18616524-18617887(-) (10)	NA	A1DCU5	DNA damage-inducible protein 1	AT3G13235.3	ubiquitin family protein 	LOC_Os02g10510.1	"Ubiquitin family domain containing protein, expressed"	Medtr3g080400.1	"Peptidase aspartic, catalytic; UBA-like "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
PtpAffx.31463.1.S1_at	A	A1TS	POPTR_0001s47330	POPTR_0001s47330 (11)	scaffold_1:47559878-47561302(-) (11)	NA	A1DCU5	DNA damage-inducible protein 1	AT3G13235.3	ubiquitin family protein 	LOC_Os02g10510.1	"Ubiquitin family domain containing protein, expressed"	Medtr3g080400.1	"Peptidase aspartic, catalytic; UBA-like "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
PtpAffx.3147.1.A1_at	A	A1TS	POPTR_0005s26000	POPTR_0005s26000 (11)	scaffold_5:24154752-24155241(-) (11)	NA	NA	NA	AT1G75730.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages. 	NA	NA	Medtr3g156340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3147.2.A1_at	A	A1TS	POPTR_0002s02440	POPTR_0002s02440 (9)	scaffold_2:1382556-1383093(+) (9)	NA	NA	NA	AT1G75730.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages. 	NA	NA	Medtr3g156340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31476.1.S1_s_at	A	A1TS	POPTR_0005s11330	POPTR_0005s11330 (11)	scaffold_5:8205890-8206434(+) (11)	NA	P27626	Senescence-associated protein DIN1	AT2G17850.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os02g01220.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr8g089600.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31479.1.S1_a_at	A	A2TS	POPTR_0005s00460	POPTR_0013s00380 (11)//POPTR_0005s00460 (11)	scaffold_13:151497-152091(-) (11)//scaffold_5:158939-159515(-) (11)	NA	P42211	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g04630.6	"retrotransposon protein, putative, SINE subclass, expressed"	Medtr7g134920.2	"Peptidase A1, pepsin "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
PtpAffx.3148.1.S1_at	A	A1TS	POPTR_0001s17300	POPTR_0001s17300 (10)	scaffold_1:14129956-14130909(-) (10)	NA	NA	NA	AT1G52680.1	late embryogenesis abundant protein-related / LEA protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31483.1.A1_at	A	A1MS	POPTR_0016s12210	POPTR_0016s12210 (11)	scaffold_16:11549357-11549708(+) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31484.1.A1_at	A	A1TS	POPTR_0006s22480	POPTR_0006s22480 (11)	scaffold_6:21482480-21482869(-) (11)	NA	NA	NA	AT3G11560.4	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31484.3.A1_at	A	A1TS	POPTR_0016s07580	POPTR_0016s07580 (9)	scaffold_16:5446025-5446406(-) (9)	NA	NA	NA	AT3G11560.4	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31484.4.A1_at	A	A1TA	POPTR_0006s22480	POPTR_0006s22480 (10)	scaffold_6:21482810-21483276(+) (11)	NA	NA	NA	AT3G11560.4	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31489.2.A1_a_at	A	A1TS	POPTR_0009s11450	POPTR_0009s11450 (11)	scaffold_9:9507841-9508364(-) (11)	NA	Q8H124	"Uncharacterized protein At2g34460, chloroplastic"	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g01044.1	"isoflavone reductase, putative, expressed"	Medtr8g121780.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31506.1.S1_at	A	A1MS	POPTR_0014s10640	POPTR_0014s10640 (9)	scaffold_14:7917143-7917911(-) (9)	NA	Q09893	Uncharacterized protein C24B11.05	AT3G62040.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g44060.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr4g084040.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.31508.1.A1_at	A	A1TS	POPTR_0003s15860	POPTR_0003s15860 (11)	scaffold_3:15549817-15550305(-) (11)	NA	NA	NA	AT5G47920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g31350.1	expressed protein	Medtr7g099490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31511.1.A1_at	A	A1TA	POPTR_0018s10100	POPTR_0018s10100 (10)	scaffold_18:11096246-11096469(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31521.1.A1_at	A	A1TS	POPTR_0004s15600	POPTR_0004s15600 (11)	scaffold_4:16208555-16209003(+) (11)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT5G42650.1	allene oxide synthase 	LOC_Os03g55800.1	"cytochrome P450, putative, expressed"	Medtr4g093070.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31538.1.A1_at	A	A1TS	POPTR_0002s00650	POPTR_0002s00650 (10)	scaffold_2:291589-292340(+) (10)	NA	NA	NA	AT2G33620.4	AT hook motif DNA-binding family protein 	LOC_Os08g40150.2	"AT hook motif domain containing protein, expressed"	Medtr5g010440.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
PtpAffx.31540.1.S1_at	A	A1TS	POPTR_0013s05630	POPTR_0013s05630 (11)	scaffold_13:4031106-4031148(-) (11)//scaffold_877:1945-1987(+) (11)	NA	O75175	CCR4-NOT transcription complex subunit 3	AT5G18230.1	transcription regulator NOT2/NOT3/NOT5 family protein 	LOC_Os03g44900.1	"CCR4-NOT transcription factor, putative, expressed"	Medtr7g100260.1	"Not CCR4-Not complex component, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.31540.1.S1_s_at	A	A2TS	POPTR_0013s05630	POPTR_0013s05630 (11)//POPTR_0019s04840 (10)	scaffold_13:4032177-4033220(-) (11)//scaffold_19:5078555-5079579(+) (10)//scaffold_877:47-916(+) (9)	NA	O75175	CCR4-NOT transcription complex subunit 3	AT5G18230.1	transcription regulator NOT2/NOT3/NOT5 family protein 	LOC_Os03g44900.1	"CCR4-NOT transcription factor, putative, expressed"	Medtr7g100260.1	"Not CCR4-Not complex component, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.31547.1.A1_at	A	A1TA	POPTR_0013s02330	POPTR_0013s02330 (11)	scaffold_13:1396800-1397123(-) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT1G55040.1	zinc finger (Ran-binding) family protein 	LOC_Os07g22024.1	"zinc finger family protein, putative, expressed"	Medtr7g139130.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.31549.1.A1_s_at	A	A1TS	POPTR_0018s11750	POPTR_0018s11750 (11)	scaffold_18:12402266-12402488(+) (11)	NA	Q56X72	Reticulon-like protein B21	AT5G58000.1	Reticulon family protein 	LOC_Os08g17870.1	"reticulon domain containing protein, putative, expressed"	Medtr4g108500.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.31551.1.S1_s_at	A	A1TS	POPTR_0002s11680	POPTR_0002s11680 (11)	scaffold_2:8687185-8687630(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31552.1.A1_a_at	A	A1TS	POPTR_0012s10380	POPTR_0012s10380 (9)	scaffold_12:11175142-11175532(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31555.1.A1_at	A	A1TS	POPTR_0013s12070	POPTR_0013s12070 (11)	scaffold_13:12727988-12728416(-) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT1G34260.1	FORMS APLOID AND BINUCLEATE CELLS 1A 	LOC_Os08g01390.1	"phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.31559.1.A1_at	A	A1TS	POPTR_0014s07320	POPTR_0014s07320 (11)	scaffold_14:5518808-5519048(-) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	LOC_Os01g67770.1	"two-component response regulator, putative, expressed"	Medtr3g102990.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.3156.1.A1_s_at	A	A1TS	POPTR_0010s01370	POPTR_0010s01370 (11)	scaffold_10:1478584-1479017(+) (11)	NA	Q8K370	Acyl-CoA dehydrogenase family member 10	AT3G06810.1	acyl-CoA dehydrogenase-related 	LOC_Os07g47820.1	"acyl-CoA dehydrogenase family member 10, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.31570.1.S1_at	A	A1TS	POPTR_0006s21350	POPTR_0006s21350 (10)	scaffold_6:20404434-20406079(+) (10)	NA	NA	NA	AT5G06560.1	"Protein of unknown function, DUF593 "	LOC_Os12g30500.1	"DUF593 domain containing protein, expressed"	Medtr8g144910.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31570.2.A1_at	A	A1TS	POPTR_0016s06530	POPTR_0016s06530 (11)	scaffold_16:4381483-4383057(+) (11)	NA	NA	NA	AT5G06560.1	"Protein of unknown function, DUF593 "	LOC_Os12g30500.1	"DUF593 domain containing protein, expressed"	Medtr8g144910.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31571.1.A1_at	A	A1TS	POPTR_0007s02030	POPTR_0007s02030 (11)	scaffold_7:1185725-1186158(+) (11)	NA	Q9ULI0	ATPase family AAA domain-containing protein 2B	AT1G05910.1	cell division cycle protein 48-related / CDC48-related 	LOC_Os09g33980.1	"bromodomain protein 103, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.31580.1.A1_at	A	A1TS	POPTR_0012s08860	POPTR_0012s08860 (11)	scaffold_12:9924310-9924774(-) (11)	NA	Q65X23	Probable serine/threonine-protein kinase WNK2	AT3G48260.1	with no lysine (K) kinase 3 	LOC_Os05g01780.1	"STE_PAK_Ste20++TranslationKinase_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g115110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.31583.1.A1_at	A	A1TS	POPTR_0018s07480	POPTR_0018s07480 (10)	scaffold_18:7793468-7794015(-) (10)	NA	A7PZL3	Probable polygalacturonase	AT1G19170.1	Pectin lyase-like superfamily protein 	LOC_Os09g26800.1	"polygalacturonase, putative, expressed"	Medtr2g050070.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.31584.1.S1_at	A	A1TS	POPTR_0004s08060	POPTR_0004s08060 (11)	scaffold_4:6583052-6583651(+) (11)	NA	NA	NA	AT5G16550.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g32980.1	expressed protein	Medtr5g099190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31607.1.A1_at	A	A1TA	POPTR_0008s03830	POPTR_0008s03830 (11)	scaffold_8:2079009-2079224(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31610.1.S1_a_at	A	A1TS	POPTR_0011s04510	POPTR_0011s04510 (11)	scaffold_11:4467092-4467352(-) (11)	NA	NA	NA	AT1G61240.4	Protein of unknown function (DUF707) 	LOC_Os07g37760.2	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g013740.2	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31612.1.S1_at	A	A1TS	POPTR_0003s12350	POPTR_0003s12350 (11)	scaffold_3:12955188-12955899(+) (11)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT4G11680.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os02g45240.1	"zinc finger family protein, putative, expressed"	Medtr5g010900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31614.1.A1_at	A	A1TS	POPTR_0006s14680	POPTR_0006s14680 (11)	scaffold_6:12054008-12054233(+) (11)	NA	P48980	Beta-galactosidase	AT3G13750.1	beta galactosidase 1 	LOC_Os01g39830.1	"beta-galactosidase, putative, expressed"	Medtr2g121320.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.31623.1.A1_at	A	A1TS	POPTR_0018s13630	POPTR_0018s13630 (11)	scaffold_18:13897865-13898252(+) (11)	NA	Q7ZWJ3	Oligosaccharyltransferase complex subunit ostc	AT4G29870.1	Oligosaccharyltransferase complex/magnesium transporter family protein 	LOC_Os02g21080.1	"AGAP008475-PA, putative, expressed"	Medtr2g043130.1	"UPF0527 membrane protein B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3163.2.A1_s_at	A	A1TS	POPTR_0010s05730	POPTR_0010s05730 (11)	scaffold_10:7216030-7217594(-) (11)	NA	NA	NA	AT1G67850.2	Protein of unknown function (DUF707) 	LOC_Os01g68260.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31633.1.A1_at	A	A1TS	POPTR_0008s08370	POPTR_0008s08370 (11)	scaffold_8:5198336-5198938(+) (11)	NA	NA	NA	AT1G16290.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). "	LOC_Os02g07480.1	"transglycosylase SLT domain containing protein, expressed"	Medtr2g077950.1	"Contains a PF|01464 Transglycosylase SLT domain., putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31663.1.A1_at	A	A1TS	POPTR_0001s35080	POPTR_0001s35080 (11)	scaffold_1:33364333-33365951(+) (11)	NA	Q40345	"Isocitrate dehydrogenase [NADP], chloroplastic (Fragment)"	AT5G14590.1	Isocitrate/isopropylmalate dehydrogenase family protein 	LOC_Os04g42920.1	"dehydrogenase, putative, expressed"	Medtr6g005410.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.31672.1.S1_s_at	A	A1TS	POPTR_0004s20910	POPTR_0004s20910 (11)	scaffold_4:20272323-20272652(-) (11)	NA	Q6NZ07	Nicalin-1	AT3G44330.1	"INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). "	LOC_Os08g01180.1	"nicalin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31672.2.S1_at	A	A1MS	POPTR_0004s20910	POPTR_0004s20910 (11)	scaffold_4:20272762-20272884(-) (11)	NA	Q6NZ07	Nicalin-1	AT3G44330.1	"INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). "	LOC_Os08g01180.1	"nicalin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31675.1.A1_at	A	A1TA	POPTR_0004s15050	POPTR_0004s15050 (11)	scaffold_4:15716881-15717062(+) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT2G03550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g11130.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.3170.1.A1_at	A	A1TS	POPTR_0014s07540	POPTR_0014s07540 (10)	scaffold_14:5664239-5665537(+) (10)	NA	NA	NA	NA	NA	LOC_Os02g42730.1	expressed protein	Medtr7g084310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3171.1.S1_at	A	A1TS	POPTR_0014s17580	POPTR_0014s17580 (11)	scaffold_14:13817638-13818722(-) (11)	NA	Q8L7B2	Serine carboxypeptidase-like 20	AT4G12910.1	serine carboxypeptidase-like 20 	LOC_Os12g15470.2	"OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr8g011750.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.31726.1.A1_at	A	A1TS	POPTR_0002s26100	POPTR_0002s26100 (11)	scaffold_2:23068277-23069426(-) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT4G28600.1	no pollen germination related 2 	LOC_Os10g33290.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g090090.2	"NPGR2 ; calmodulin binding ta, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31728.2.A1_a_at	A	A1TS	POPTR_0001s41090	POPTR_0001s41090 (11)	scaffold_1:40750199-40750786(+) (11)	NA	Q9LUQ5	Probable ubiquitin-conjugating enzyme E2 25	AT3G15355.1	ubiquitin-conjugating enzyme 25 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.3173.10.S1_a_at	A	A1TS	POPTR_0002s05650	POPTR_0002s05650 (11)	scaffold_2:3717848-3719701(-) (11)	NA	Q9SS37	Reticulon-like protein B8	AT3G10260.3	Reticulon family protein 	LOC_Os03g56900.1	"reticulon domain containing protein, putative, expressed"	Medtr5g097480.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.3173.3.S1_at	A	A1TS	POPTR_0010s20060	POPTR_0010s20060 (10)	scaffold_10:17811155-17811479(-) (10)	NA	O20252	"Sedoheptulose-1,7-bisphosphatase, chloroplastic"	AT3G55800.1	sedoheptulose-bisphosphatase 	LOC_Os04g16680.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr3g093130.1	"Inositol phosphatase/fructose-1,6-bisphosphatase; Glycoside hydrolase, family 5 "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.3173.6.S1_at	A	A1TS	POPTR_0005s22840	POPTR_0005s22840 (11)	scaffold_5:21724118-21725348(+) (11)	NA	Q9SS37	Reticulon-like protein B8	AT3G10260.2	Reticulon family protein 	LOC_Os07g04910.1	"reticulon domain containing protein, putative, expressed"	Medtr5g097480.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.3173.8.S1_s_at	A	A1TS	POPTR_0009s13750	POPTR_0009s13750 (11)	scaffold_9:10905112-10905154(-) (11)	NA	O22468	WD-40 repeat-containing protein MSI2	AT2G16780.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31735.1.S1_at	A	A1TS	POPTR_0009s05730	POPTR_0009s05730 (9)	scaffold_9:5746984-5747352(-) (9)	NA	P72854	Sulfite reductase [ferredoxin]	AT5G04590.1	sulfite reductase 	LOC_Os05g42350.1	"ferredoxin--nitrite reductase, putative, expressed"	Medtr4g129810.1	Ferredoxin-nitrite reductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0051536|iron-sulfur cluster binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.31735.2.S1_at	A	A2TS	POPTR_0001s34270	POPTR_0001s34270 (10)//POPTR_0001s26420 (9)	scaffold_1:25448700-25449084(-) (11)//scaffold_1:32426684-32427031(-) (10)	NA	P72854	Sulfite reductase [ferredoxin]	AT5G04590.1	sulfite reductase 	LOC_Os05g42350.1	"ferredoxin--nitrite reductase, putative, expressed"	Medtr4g129810.1	Ferredoxin-nitrite reductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0051536|iron-sulfur cluster binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.31736.1.S1_s_at	A	A1TS	POPTR_0003s16750	POPTR_0003s16750 (11)	scaffold_3:16280866-16282755(+) (11)	NA	Q9FYA2	Probable WRKY transcription factor 75	AT5G13080.1	WRKY DNA-binding protein 75 	LOC_Os11g29870.1	"OsWRKY72 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088920.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.31750.1.A1_at	A	A1TS	POPTR_0007s14120	POPTR_0007s14120 (9)	scaffold_7:14014377-14014842(+) (9)	NA	Q66JG8	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.31752.1.S1_at	A	A1TS	POPTR_0006s05430	POPTR_0006s05430 (11)	scaffold_6:3844664-3845370(+) (11)	NA	P42784	Carboxyl-terminal-processing protease	AT3G57680.1	Peptidase S41 family protein 	LOC_Os06g21380.1	"OsCttP3 - Putative C-terminal processing peptidase homologue, expressed"	Medtr1g087140.1	"Peptidase S41A, C-terminal protease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0005515|protein binding||GO:0008236|serine-type peptidase activity	NA
PtpAffx.31765.1.S1_at	A	A1TS	POPTR_0003s09760	POPTR_0003s09760 (11)	scaffold_3:10995689-10996563(-) (11)	NA	Q9C551	DEAD-box ATP-dependent RNA helicase 5	AT1G31970.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os07g20580.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g028000.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.3177.1.A1_at	A	A2TS	POPTR_0017s13650	POPTR_0017s13650 (11)//POPTR_1731s00200 (11)	scaffold_17:13749870-13750461(+) (11)//scaffold_1731:459-1053(+) (11)	NA	Q8LFJ9	GDSL esterase/lipase 7	AT5G15720.1	GDSL-motif lipase 7 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g022220.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.31776.1.S1_s_at	A	A1TS	POPTR_0016s01000	POPTR_0016s01000 (11)	scaffold_16:396115-397209(-) (11)	POPTR_0777s00210 (6)	Q9H6Q4	Cytosolic Fe-S cluster assembly factor NARFL	AT4G16440.1	ferredoxin hydrogenases 	LOC_Os03g53750.1	"nuclear prelamin A recognition factor, putative, expressed"	Medtr3g162950.1	Iron hydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31782.2.A1_a_at	A	A1TS	POPTR_0013s01120	POPTR_0013s01120 (11)	scaffold_13:613963-615692(+) (11)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os12g37360.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.31787.1.A1_at	A	A1TS	POPTR_0002s02200	POPTR_0002s02200 (11)	scaffold_2:1220407-1220720(-) (11)	NA	P83332	Thaumatin-like protein 1	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31791.1.S1_s_at	A	A2TS	POPTR_0012s04570	POPTR_0012s04570 (11)//POPTR_0015s04410 (11)	scaffold_12:3861092-3863990(-) (11)//scaffold_15:4568298-4570925(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G73660.1	protein tyrosine kinase family protein 	LOC_Os06g12590.1	"protein kinase, putative, expressed"	Medtr4g155190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.31792.1.S1_at	A	A1TS	POPTR_0004s21550	POPTR_0004s21550 (10)	scaffold_4:20632812-20633357(+) (10)	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.318.1.A1_at	A	A1TS	POPTR_0017s02710	POPTR_0017s02710 (10)	scaffold_17:1944067-1944497(+) (10)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G66180.1	Eukaryotic aspartyl protease family protein 	LOC_Os03g16500.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g087300.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3180.1.S1_s_at	A	A1TS	POPTR_0014s05550	POPTR_0014s05550 (11)	scaffold_14:4150777-4151128(-) (11)	NA	O81908	"Pentatricopeptide repeat-containing protein At1g02060, chloroplastic"	AT1G02060.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g02950.1	"pentatricopeptide, putative, expressed"	Medtr7g041080.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3181.1.S1_at	A	A3TS	POPTR_0003s06700	POPTR_0003s06700 (11)//POPTR_0003s06710 (11)//POPTR_0003s06720 (11)	scaffold_3:8234147-8238146(-) (11)//scaffold_3:8254355-8255178(-) (11)//scaffold_3:8267038-8267860(-) (11)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14130.1	Aldolase-type TIM barrel family protein 	LOC_Os07g42440.3	"hydroxyacid oxidase 1, putative, expressed"	NA	NA	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.31826.1.A1_at	A	A1TS	POPTR_0006s25840	POPTR_0006s25840 (9)	scaffold_6:24187935-24188507(-) (11)	NA	Q9S7G7	Myb-related protein 3R-1	AT4G32730.2	Homeodomain-like protein 	LOC_Os01g12860.1	"MYB family transcription factor, putative, expressed"	AC225518_14.1	Homeodomain-like; AC225518.12 45180-39703 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31831.1.S1_at	A	A1TS	POPTR_0007s13550	POPTR_0007s13550 (11)	scaffold_7:13602495-13604128(-) (11)	NA	Q43636	Thioredoxin H-type	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr1g028610.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.31834.1.A1_at	A	A1TS	POPTR_0015s04810	POPTR_0015s04810 (11)	scaffold_15:5001622-5003017(+) (11)	NA	NA	NA	AT3G17930.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3007 (InterPro:IPR021562); Has 236 Blast hits to 236 proteins in 83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 	LOC_Os01g59080.1	expressed protein	Medtr4g154710.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31842.1.S1_at	A	A1TS	POPTR_0011s12160	POPTR_0011s12160 (11)	scaffold_11:14929466-14930825(+) (11)	NA	NA	NA	AT5G53800.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g44800.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31862.1.S1_at	A	A1TS	POPTR_0002s01130	POPTR_0002s01130 (11)	scaffold_2:607149-608366(+) (11)	NA	O60762	Dolichol-phosphate mannosyltransferase	AT1G20575.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g60939.1	"dolichyl-phosphate beta-glycosyltransferase, putative, expressed"	Medtr2g116710.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3187.1.A1_at	A	A1TS	POPTR_0014s15890	POPTR_0014s15890 (10)	scaffold_14:11968638-11969924(-) (10)	NA	Q8VYC2	Putative BPI/LBP family protein At3g20270	AT1G04970.1	lipid-binding serum glycoprotein family protein 	LOC_Os06g20430.1	"BPI/LBP family protein At3g20270 precursor, putative, expressed"	Medtr5g092010.1	Lipid-binding serum glycoprotein 	NA	GO:0008289|lipid binding	NA
PtpAffx.31883.1.A1_a_at	A	A1TS	POPTR_0013s01700	POPTR_0013s01700 (11)	scaffold_13:965084-965692(+) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT1G09140.1	SERINE-ARGININE PROTEIN 30 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr1g099910.4	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.31909.1.S1_at	A	A1TS	POPTR_0012s07640	POPTR_0012s07640 (11)	scaffold_12:8547455-8551911(-) (11)	NA	NA	NA	AT3G48080.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr3g111260.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.3191.1.S1_at	A	A1TS	POPTR_0002s25920	POPTR_0002s25920 (11)	scaffold_2:22936634-22937040(+) (11)	NA	Q9FNC7	Histone-lysine N-methyltransferase SUVR2	AT5G43990.4	SET-domain containing protein lysine methyltransferase family protein 	LOC_Os02g40770.2	"SET domain containing protein, expressed"	Medtr7g116840.1	Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.31911.1.S1_at	A	A1MS	POPTR_0005s01730	POPTR_0005s01730 (10)	scaffold_5:1157159-1157639(-) (10)	NA	Q9XGI7	Nicotianamine synthase	AT1G09240.1	nicotianamine synthase 3 	LOC_Os07g48980.1	"nicotianamine synthase, putative, expressed"	Medtr1g100600.1	Nicotianamine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0030418|nicotianamine biosynthetic process||GO:0044106|cellular amine metabolic process	GO:0030410|nicotianamine synthase activity	NA
PtpAffx.31916.1.A1_at	A	A1TS	POPTR_0002s10650	POPTR_0002s10650 (11)	scaffold_2:7739175-7739698(+) (11)	NA	NA	NA	AT4G38060.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os08g31940.1	expressed protein	Medtr5g075280.1	Acetate and butyrate kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31936.1.A1_at	A	A1TS	POPTR_0010s19120	POPTR_0010s19120 (11)	scaffold_10:17128456-17128991(+) (11)	NA	Q8S8E3	Abscisic acid receptor PYL6	AT2G40330.1	PYR1-like 6 	LOC_Os03g18600.1	"cyclase/dehydrase family protein, putative, expressed"	Medtr5g090770.1	"Bet v I allergen; Carbohydrate kinase, PfkB; Streptomyces cyclase/dehydrase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3194.1.A1_at	A	A1TS	POPTR_0006s09490	POPTR_0006s09490 (10)	scaffold_6:6976127-6976490(+) (10)	NA	NA	NA	AT2G37940.1	Arabidopsis Inositol phosphorylceramide synthase 2 	LOC_Os05g21180.2	"phosphatidic acid phosphatase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31970.1.S1_at	A	A1TS	POPTR_0004s23250	POPTR_0004s23250 (9)	scaffold_4:22030526-22031171(-) (9)	NA	Q0VCZ3	YTH domain family protein 2	AT1G09810.1	evolutionarily conserved C-terminal region 11 	LOC_Os01g48790.2	"YT521-B-like family domain containing protein, expressed"	Medtr2g005610.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31975.1.S1_at	A	A1TS	POPTR_0006s20860	POPTR_0006s20860 (11)	scaffold_6:19890897-19892213(-) (11)	NA	Q9M2P4	E3 ubiquitin-protein ligase SINAT2	AT3G58040.1	seven in absentia of Arabidopsis 2 	LOC_Os05g14860.1	"seven in absentia protein family domain containing protein, expressed"	Medtr7g112270.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.3198.1.S1_s_at	A	A1TS	POPTR_0003s02400	POPTR_0003s02400 (11)	scaffold_3:2491217-2491613(+) (11)	POPTR_0001s20770 (7)	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31987.1.S1_at	A	A1TS	POPTR_0015s09200	POPTR_0015s09200 (9)	scaffold_15:10471410-10471803(-) (9)	NA	Q08BY5	JmjC domain-containing protein 4	AT5G63080.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g36630.1	"jmjC domain-containing protein 4, putative, expressed"	Medtr3g114430.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3200.1.S1_at	A	A1TS	POPTR_0007s00560	POPTR_0007s00560 (10)	scaffold_7:223762-224271(+) (10)	NA	Q39172	Probable NADP-dependent oxidoreductase P1	AT5G16970.1	alkenal reductase 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.32004.1.A1_at	A	A1TS	POPTR_0006s06040	POPTR_0006s06040 (10)	scaffold_6:4291523-4292014(-) (10)	NA	Q8N1E6	F-box/LRR-repeat protein 14	AT1G15740.1	Leucine-rich repeat family protein 	LOC_Os04g42470.4	"regulatory subunit, putative, expressed"	Medtr8g122250.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.32004.2.S1_a_at	A	A1TS	POPTR_0006s06040	POPTR_0006s06040 (11)	scaffold_6:4293319-4293353(-) (11)	NA	Q8N1E6	F-box/LRR-repeat protein 14	AT1G15740.1	Leucine-rich repeat family protein 	LOC_Os04g42470.4	"regulatory subunit, putative, expressed"	Medtr8g122250.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.32004.2.S1_at	A	A1TS	POPTR_0006s06040	POPTR_0006s06040 (10)	scaffold_6:4293392-4295452(-) (10)	NA	Q8N1E6	F-box/LRR-repeat protein 14	AT1G15740.1	Leucine-rich repeat family protein 	LOC_Os04g42470.4	"regulatory subunit, putative, expressed"	Medtr8g122250.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.32024.1.A1_at	A	A1TS	POPTR_0017s07770	POPTR_0017s07770 (11)	scaffold_17:6038923-6039672(-) (11)	NA	P73962	"Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase"	AT1G60600.2	UbiA prenyltransferase family protein 	LOC_Os03g09060.1	"prenyltransferase, putative, expressed"	Medtr4g120820.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.3203.1.A1_s_at	A	A1TS	POPTR_0005s26260	POPTR_0005s26260 (11)	scaffold_5:24325308-24325638(-) (11)	NA	P35016	Endoplasmin homolog	AT4G24190.1	Chaperone protein htpG family protein 	LOC_Os06g50300.1	"heat shock protein, putative, expressed"	Medtr1g031360.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.3203.2.S1_a_at	A	A1TS	POPTR_0015s11110	POPTR_0015s11110 (11)	scaffold_15:11782040-11782668(+) (11)	NA	Q8VY78	SUMO-activating enzyme subunit 1A	AT4G24940.1	SUMO-activating enzyme 1A 	LOC_Os11g30410.1	"ThiF family domain containing protein, putative, expressed"	Medtr5g080730.1	"Ubiquitin-activating enzyme, E1 "	NA	GO:0003824|catalytic activity	NA
PtpAffx.3203.4.A1_at	A	A1TA	POPTR_0015s11110	POPTR_0015s11110 (11)	scaffold_15:11782673-11782772(-) (11)	NA	Q8VY78	SUMO-activating enzyme subunit 1A	AT4G24940.1	SUMO-activating enzyme 1A 	LOC_Os11g30410.1	"ThiF family domain containing protein, putative, expressed"	Medtr5g080730.1	"Ubiquitin-activating enzyme, E1 "	NA	GO:0003824|catalytic activity	NA
PtpAffx.3203.5.S1_a_at	A	A1TS	POPTR_0005s26260	POPTR_0005s26260 (11)	scaffold_5:24329510-24329685(-) (11)	NA	P35016	Endoplasmin homolog	AT4G24190.1	Chaperone protein htpG family protein 	LOC_Os06g50300.1	"heat shock protein, putative, expressed"	Medtr1g031360.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.3203.5.S1_at	A	A1TS	POPTR_0005s26260	POPTR_0005s26260 (11)	scaffold_5:24329444-24330255(-) (11)	NA	P35016	Endoplasmin homolog	AT4G24190.1	Chaperone protein htpG family protein 	LOC_Os06g50300.1	"heat shock protein, putative, expressed"	Medtr1g031360.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.3203.6.S1_a_at	A	A1TS	POPTR_0015s11110	POPTR_0015s11110 (11)	scaffold_15:11779525-11780456(+) (11)	NA	Q8VY78	SUMO-activating enzyme subunit 1A	AT4G24940.1	SUMO-activating enzyme 1A 	LOC_Os11g30410.1	"ThiF family domain containing protein, putative, expressed"	Medtr5g080730.1	"Ubiquitin-activating enzyme, E1 "	NA	GO:0003824|catalytic activity	NA
PtpAffx.32035.1.S1_at	A	A1TS	POPTR_0005s26240	POPTR_0005s26240 (11)	scaffold_5:24308301-24309405(+) (11)	NA	P83332	Thaumatin-like protein 1	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32068.1.S1_at	A	A1MS	POPTR_0006s11920	POPTR_0006s11920 (11)	scaffold_6:9112615-9112692(-) (11)	NA	NA	NA	AT2G36630.1	Sulfite exporter TauE/SafE family protein 	LOC_Os03g51650.1	"membrane protein, putative, expressed"	Medtr1g073760.1	"membrane protein-like protein, related "	NA	NA	GO:0016021|integral to membrane
PtpAffx.32068.1.S1_s_at	A	A1TS	POPTR_0006s11920	POPTR_0006s11920 (11)	scaffold_6:9112024-9112613(-) (11)	NA	NA	NA	AT2G36630.1	Sulfite exporter TauE/SafE family protein 	LOC_Os03g51650.1	"membrane protein, putative, expressed"	Medtr1g073760.1	"membrane protein-like protein, related "	NA	NA	GO:0016021|integral to membrane
PtpAffx.3207.1.S1_a_at	A	A1TS	POPTR_0001s34480	POPTR_0001s34480 (11)	scaffold_1:32600765-32601235(+) (11)	POPTR_0011s02840 (8)	Q60BH8	Putative pterin-4-alpha-carbinolamine dehydratase	AT1G29810.1	Transcriptional coactivator/pterin dehydratase 	LOC_Os01g47420.1	"pterin-4-alpha-carbinolamine dehydratase, putative, expressed"	Medtr5g019890.1	Transcriptional coactivator/pterin dehydratase 	GO:0006729|tetrahydrobiopterin biosynthetic process	GO:0008124|4-alpha-hydroxytetrahydrobiopterin dehydratase activity	NA
PtpAffx.3207.4.S1_at	A	A1MS	POPTR_0001s34480	POPTR_0001s34480 (10)	scaffold_1:32601226-32601436(+) (10)	NA	Q60BH8	Putative pterin-4-alpha-carbinolamine dehydratase	AT1G29810.1	Transcriptional coactivator/pterin dehydratase 	LOC_Os01g47420.1	"pterin-4-alpha-carbinolamine dehydratase, putative, expressed"	Medtr5g019890.1	Transcriptional coactivator/pterin dehydratase 	GO:0006729|tetrahydrobiopterin biosynthetic process	GO:0008124|4-alpha-hydroxytetrahydrobiopterin dehydratase activity	NA
PtpAffx.3207.5.S1_a_at	A	A2TS	POPTR_0001s34480	POPTR_0001s34480 (11)//POPTR_0011s02840 (9)	scaffold_1:32601961-32602005(+) (11)//scaffold_11:2793067-2793108(-) (9)	NA	Q60BH8	Putative pterin-4-alpha-carbinolamine dehydratase	AT1G29810.1	Transcriptional coactivator/pterin dehydratase 	LOC_Os01g47420.1	"pterin-4-alpha-carbinolamine dehydratase, putative, expressed"	Medtr5g019890.1	Transcriptional coactivator/pterin dehydratase 	GO:0006729|tetrahydrobiopterin biosynthetic process	GO:0008124|4-alpha-hydroxytetrahydrobiopterin dehydratase activity	NA
PtpAffx.3207.5.S1_at	A	A1MS	POPTR_0001s34480	POPTR_0001s34480 (11)	scaffold_1:32601622-32602202(+) (11)	NA	Q60BH8	Putative pterin-4-alpha-carbinolamine dehydratase	AT1G29810.1	Transcriptional coactivator/pterin dehydratase 	LOC_Os01g47420.1	"pterin-4-alpha-carbinolamine dehydratase, putative, expressed"	Medtr5g019890.1	Transcriptional coactivator/pterin dehydratase 	GO:0006729|tetrahydrobiopterin biosynthetic process	GO:0008124|4-alpha-hydroxytetrahydrobiopterin dehydratase activity	NA
PtpAffx.32079.1.A1_at	A	A1MS	POPTR_0008s06490	POPTR_0008s06490 (11)	scaffold_8:3857103-3857545(-) (11)	NA	P58684	Probable signal peptidase complex subunit 2	AT2G39960.1	Microsomal signal peptidase 25 kDa subunit (SPC25) 	LOC_Os02g35720.1	"signal peptidase complex subunit 2, putative, expressed"	Medtr5g089240.1	Microsomal signal peptidase 25 kDa subunit 	GO:0044260|cellular macromolecule metabolic process||GO:0006508|proteolysis||GO:0006465|signal peptide processing	GO:0008233|peptidase activity	GO:0005787|signal peptidase complex||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.32089.1.A1_a_at	A	A1TS	POPTR_0015s13410	POPTR_0015s13410 (11)	scaffold_15:13386803-13387252(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32103.1.S1_a_at	A	A3TS	POPTR_0002s18500	POPTR_0002s18500 (11)//POPTR_0002s18510 (11)//POPTR_0014s10540 (11)	scaffold_14:7847828-7848258(+) (10)//scaffold_2:14398988-14399432(+) (11)//scaffold_2:14404564-14404970(+) (11)	NA	Q5R6D1	Cathepsin B	AT4G01610.2	Cysteine proteinases superfamily protein 	LOC_Os05g24550.6	"Papain family cysteine protease domain containing protein, expressed"	Medtr7g134420.1	"Peptidase C1A, papain; Somatotropin hormone; Peptidase C1, propeptide; "	GO:0019538|protein metabolic process||GO:0050790|regulation of catalytic activity||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.32103.1.S1_at	A	A1TS	POPTR_0002s18510	POPTR_0002s18510 (11)	scaffold_2:14404553-14405483(+) (11)	NA	Q4R5M2	Cathepsin B	AT1G02305.1	Cysteine proteinases superfamily protein 	LOC_Os05g24550.6	"Papain family cysteine protease domain containing protein, expressed"	Medtr7g134420.1	"Peptidase C1A, papain; Somatotropin hormone; Peptidase C1, propeptide; "	GO:0019538|protein metabolic process||GO:0050790|regulation of catalytic activity||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.32103.2.S1_at	A	A1TS	POPTR_0002s18500	POPTR_0002s18500 (11)	scaffold_2:14398908-14399946(+) (11)	NA	Q5R6D1	Cathepsin B	AT4G01610.2	Cysteine proteinases superfamily protein 	LOC_Os05g24550.6	"Papain family cysteine protease domain containing protein, expressed"	Medtr7g134420.1	"Peptidase C1A, papain; Somatotropin hormone; Peptidase C1, propeptide; "	GO:0019538|protein metabolic process||GO:0050790|regulation of catalytic activity||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.32103.3.S1_at	A	A1TS	POPTR_0014s10540	POPTR_0014s10540 (11)	scaffold_14:7848904-7849129(+) (11)	NA	Q5R6D1	Cathepsin B	AT1G02305.1	Cysteine proteinases superfamily protein 	LOC_Os05g24550.6	"Papain family cysteine protease domain containing protein, expressed"	Medtr7g134420.1	"Peptidase C1A, papain; Somatotropin hormone; Peptidase C1, propeptide; "	GO:0019538|protein metabolic process||GO:0050790|regulation of catalytic activity||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.32165.1.S1_s_at	A	A1TS	POPTR_0014s04430	POPTR_0014s04430 (11)	scaffold_14:3435192-3436176(-) (11)	NA	NA	NA	AT3G60410.3	Protein of unknown function (DUF1639) 	LOC_Os05g47810.1	expressed protein	Medtr8g105330.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32214.1.A1_at	A	A1TS	POPTR_0015s11400	POPTR_0015s11400 (11)	scaffold_15:11979940-11979992(+) (11)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os01g70100.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.32228.1.A1_at	A	A1TS	POPTR_0002s15930	POPTR_0002s15930 (11)	scaffold_2:11868593-11868628(+) (11)	NA	Q7ZVE6	KDEL motif-containing protein 1	AT5G23850.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os02g42920.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32228.1.A1_s_at	A	A1TS	POPTR_0002s15930	POPTR_0002s15930 (11)	scaffold_2:11868666-11869047(+) (11)	NA	Q7ZVE6	KDEL motif-containing protein 1	AT5G23850.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os02g42920.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32229.1.S1_at	A	A1TS	POPTR_0014s08630	POPTR_0014s08630 (10)	scaffold_14:6413558-6414149(+) (10)	NA	P46547	Proline iminopeptidase	AT3G61540.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g06820.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g088900.1	"Proline iminopeptidase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3223.1.S1_at	A	A1MS	POPTR_0009s10020	POPTR_0009s10020 (11)	scaffold_9:8724015-8725020(+) (11)	NA	Q2N5X0	Kynurenine formamidase	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32232.1.S1_a_at	A	A2TS	POPTR_0008s15440	POPTR_0008s15440 (11)//POPTR_0010s09580 (11)	scaffold_10:10336546-10336710(+) (11)//scaffold_8:10283179-10283343(-) (11)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.32232.1.S1_at	A	A1TS	POPTR_0008s15440	POPTR_0008s15440 (11)	scaffold_8:10282984-10283529(-) (11)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.32232.2.S1_at	A	A1TS	POPTR_0010s09580	POPTR_0010s09580 (11)	scaffold_10:10336311-10336956(+) (11)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32240.1.S1_at	A	A1TS	POPTR_0003s17340	POPTR_0003s17340 (10)	scaffold_3:16709503-16710015(+) (10)	NA	Q8LAU9	GATA transcription factor 1	AT3G24050.1	GATA transcription factor 1 	LOC_Os02g43150.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g007680.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.32256.1.A1_a_at	A	A1TS	POPTR_0014s13240	POPTR_0014s13240 (11)	scaffold_14:9765515-9765615(+) (11)	NA	P93051	Sugar transporter ERD6-like 7	AT2G48020.1	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr8g139840.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.32260.1.A1_s_at	A	A3TS	POPTR_0011s15490	POPTR_0011s15490 (11)//POPTR_0011s15500 (11)//POPTR_0011s15530 (11)	scaffold_11:17567675-17567967(-) (11)//scaffold_11:17585380-17585672(-) (11)//scaffold_11:17621530-17621822(-) (11)	NA	Q949X0	"Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic"	AT3G15850.1	fatty acid desaturase 5 	NA	NA	Medtr4g005600.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.32266.2.S1_a_at	A	A1TS	POPTR_0015s13640	POPTR_0015s13640 (11)	scaffold_15:13510509-13510837(+) (11)	NA	NA	NA	AT5G52110.2	Protein of unknown function (DUF2930) 	LOC_Os10g37840.7	"CCB2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32281.1.A1_at	A	A1TS	POPTR_0008s17710	POPTR_0008s17710 (9)	scaffold_8:11909397-11909715(+) (9)	NA	O48700	U-box domain-containing protein 6	AT1G24330.1	ARM repeat superfamily protein 	LOC_Os01g67500.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr3g103550.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.32295.1.S1_at	A	A1TS	POPTR_0003s16210	POPTR_0003s16210 (11)	scaffold_3:15811096-15811347(+) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os01g70270.3	"auxin response factor, putative, expressed"	Medtr4g152210.2	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.32295.2.A1_s_at	A	A1TS	POPTR_0003s16210	POPTR_0003s16210 (11)	scaffold_3:15810965-15811541(+) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os01g70270.3	"auxin response factor, putative, expressed"	Medtr4g152210.2	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.32299.1.S1_at	A	A1TS	POPTR_0005s11900	POPTR_0005s11900 (11)	scaffold_5:8679963-8680924(+) (11)	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT2G21320.1	B-box zinc finger family protein 	LOC_Os09g35880.1	"B-box zinc finger family protein, putative, expressed"	Medtr5g021510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.32308.1.S1_at	A	A1TS	POPTR_0003s20040	POPTR_0003s20040 (9)	scaffold_3:18658848-18659189(+) (9)	NA	NA	NA	AT2G38800.1	Plant calmodulin-binding protein-related 	LOC_Os05g31690.1	expressed protein	Medtr3g021660.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32354.1.S1_s_at	A	A1TS	POPTR_0018s09380	POPTR_0018s09380 (11)	scaffold_18:10279125-10279224(+) (11)	NA	P34105	NADP-dependent malic enzyme	AT1G79750.1	NADP-malic enzyme 4 	LOC_Os01g52500.3	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.32354.2.S1_s_at	A	A1TS	POPTR_0018s09380	POPTR_0018s09380 (11)	scaffold_18:10278425-10279380(+) (11)	NA	P34105	NADP-dependent malic enzyme	AT1G79750.1	NADP-malic enzyme 4 	LOC_Os01g52500.3	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.32356.3.S1_at	A	A1TS	POPTR_0006s04670	POPTR_0006s04670 (11)	scaffold_6:3208987-3209471(+) (11)	NA	P52408	"Glucan endo-1,3-beta-glucosidase, basic isoform"	AT3G57240.1	"beta-1,3-glucanase 3 "	LOC_Os01g71340.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g038570.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.32362.1.S1_at	A	A2TS	POPTR_0017s02150	POPTR_0017s02150 (11)//POPTR_0017s02130 (9)	scaffold_17:1554209-1554727(+) (10)//scaffold_17:1575993-1576504(+) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G65890.1	acyl activating enzyme 12 	LOC_Os09g38350.1	"AMP-binding domain containing protein, expressed"	Medtr3g086630.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.32367.2.A1_a_at	A	A1TS	POPTR_0002s13860	POPTR_0002s13860 (11)	scaffold_2:10265236-10265326(-) (11)	NA	Q0DCT8	Protein kinase G11A	AT2G44830.1	Protein kinase superfamily protein 	LOC_Os04g46180.2	"AGC_PVPK_like_kin82y.11 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32367.3.A1_at	A	A1TS	POPTR_0002s13860	POPTR_0002s13860 (11)	scaffold_2:10265208-10265452(-) (11)	NA	Q0DCT8	Protein kinase G11A	AT2G44830.1	Protein kinase superfamily protein 	LOC_Os04g46180.2	"AGC_PVPK_like_kin82y.11 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32368.1.S1_a_at	A	A2TS	POPTR_0008s16980	POPTR_0010s07890 (11)//POPTR_0008s16980 (11)	scaffold_10:8868095-8868261(+) (11)//scaffold_8:11416196-11416362(-) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT1G32580.1	"plastid developmental protein DAG, putative "	LOC_Os06g02600.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32368.1.S1_at	A	A1TS	POPTR_0008s16980	POPTR_0008s16980 (11)	scaffold_2287:1279-1559(-) (11)//scaffold_8:11414160-11414440(-) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT1G32580.1	"plastid developmental protein DAG, putative "	LOC_Os06g02600.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32368.2.A1_at	A	A1TS	POPTR_0010s07890	POPTR_0010s07890 (11)	scaffold_10:8869877-8870405(+) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT1G32580.1	"plastid developmental protein DAG, putative "	LOC_Os06g02600.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32381.1.S1_s_at	A	A1TS	POPTR_0003s05780	POPTR_0003s05780 (11)	scaffold_3:7161703-7163440(-) (11)	NA	Q8R431	Monoglyceride lipase	AT1G52760.1	lysophospholipase 2 	LOC_Os02g11720.1	"lipase, putative, expressed"	Medtr8g129890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32385.1.A1_a_at	A	A1TS	POPTR_0001s28400	POPTR_0001s28400 (9)	scaffold_1:27204447-27204726(-) (11)	NA	Q3EBZ2	F-box protein SKIP23	AT2G17030.1	F-box family protein with a domain of unknown function (DUF295) 	LOC_Os03g58764.1	"OsFBDUF18 - F-box and DUF domain containing protein, expressed"	Medtr8g088880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32386.1.A1_a_at	A	A2TS	POPTR_0012s07870	POPTR_0015s08360 (11)//POPTR_0012s07870 (11)	scaffold_12:8826980-8827628(+) (11)//scaffold_15:9609303-9609969(+) (11)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.32386.3.A1_at	A	A1TS	POPTR_0012s07870	POPTR_0012s07870 (10)	scaffold_12:8827635-8827979(+) (10)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.3239.1.A1_at	A	A1TA	POPTR_0001s34030	POPTR_0001s34030 (9)	scaffold_1:32170012-32170558(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32412.1.S1_a_at	A	A1TS	POPTR_0019s04970	POPTR_0019s04970 (11)	scaffold_19:5163727-5163925(-) (11)	NA	NA	NA	AT1G64770.1	NDH-dependent cyclic electron flow 1 	LOC_Os03g06230.1	"galactose mutarotase-like, putative, expressed"	Medtr7g100440.1	Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32412.1.S1_at	A	A1TS	POPTR_0019s04970	POPTR_0019s04970 (11)	scaffold_19:5163637-5164550(-) (11)	NA	NA	NA	AT1G64770.1	NDH-dependent cyclic electron flow 1 	LOC_Os03g06230.1	"galactose mutarotase-like, putative, expressed"	Medtr7g100440.1	Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32417.1.S1_at	A	A1TS	POPTR_0008s03160	POPTR_0008s03160 (10)	scaffold_8:1656813-1658023(+) (10)	NA	O48902	"Malate dehydrogenase [NADP], chloroplastic"	AT5G58330.2	lactate/malate dehydrogenase family protein 	LOC_Os08g44810.1	"lactate/malate dehydrogenase, putative, expressed"	AC235664_2.3	"Malate dehydrogenase, active site AC235664.1 6223-3733 E EGN_Mt090430 200"	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.32419.1.A1_at	A	A1TS	POPTR_0005s18900	POPTR_0005s18900 (11)	scaffold_5:17318019-17318493(+) (11)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32419.2.S1_at	A	A1TS	POPTR_0005s18900	POPTR_0005s18900 (11)	scaffold_5:17317411-17317503(+) (11)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32419.2.S1_s_at	A	A2TS	POPTR_0005s18900	POPTR_0005s18900 (11)//POPTR_0007s10010 (11)	scaffold_5:17317504-17317628(+) (11)//scaffold_7:9615859-9615983(+) (11)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32431.1.S1_at	A	A1TS	POPTR_0010s18600	POPTR_0010s18600 (11)	scaffold_10:16807168-16809837(-) (11)	NA	Q9FIW4	Beta-glucosidase 42	AT5G36890.1	beta glucosidase 42 	LOC_Os01g67220.2	"Os1bglu4 - beta-glucosidase-like protein without signal sequence, expressed"	Medtr3g040460.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.32440.1.S1_at	A	A1TS	POPTR_0001s08920	POPTR_0001s08920 (9)	scaffold_1:6816703-6816815(-) (9)	NA	Q6GMF8	Rhomboid family member 1	AT1G63120.1	RHOMBOID-like 2 	LOC_Os03g02530.1	"OsRhmbd7 - Putative Rhomboid homologue, expressed"	Medtr1g129260.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.32445.1.S1_at	A	A1TS	POPTR_0017s12750	POPTR_0017s12750 (9)	scaffold_17:12917561-12918043(-) (9)	NA	NA	NA	AT1G26580.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g31230.2	"MYB family transcription factor, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32449.1.A1_a_at	A	A2TS	POPTR_0005s28170	POPTR_0005s28170 (11)//POPTR_0002s00230 (10)	scaffold_2:27141-28344(+) (10)//scaffold_5:25515273-25516717(-) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT1G21080.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os08g41110.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.32449.1.A1_at	A	A1TS	POPTR_0002s00230	POPTR_0002s00230 (11)	scaffold_2:27123-28660(+) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT1G21080.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os08g41110.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.32449.2.S1_at	A	A1TS	POPTR_0005s28170	POPTR_0005s28170 (11)	scaffold_5:25514861-25516521(-) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT1G21080.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os08g41110.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.32453.1.S1_at	A	A1TS	POPTR_0008s18310	POPTR_0008s18310 (11)	scaffold_8:12249210-12249727(-) (11)	NA	Q9SAF1	Actin-related protein 3	AT1G13180.1	Actin-like ATPase superfamily protein 	LOC_Os02g38340.1	"actin, putative, expressed"	Medtr2g008170.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.32468.1.S1_at	A	A1TS	POPTR_0001s09000	POPTR_0001s09000 (11)	scaffold_1:6882262-6882586(+) (11)	NA	P81370	Thaumatin-like protein	AT4G11650.1	osmotin 34 	LOC_Os03g46070.1	"thaumatin, putative, expressed"	Medtr5g010810.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32480.1.S1_at	A	A1TS	POPTR_0003s13820	POPTR_0003s13820 (10)	scaffold_3:14089090-14090880(+) (11)	NA	P51102	Dihydroflavonol-4-reductase	AT5G42800.1	dihydroflavonol 4-reductase 	LOC_Os07g40986.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr2g014920.1	"Leucoanthocyanidin reductase, related "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.32500.2.S1_s_at	A	A2TS	POPTR_0006s02920	POPTR_0302s00230 (11)//POPTR_0006s02920 (11)	scaffold_302:19254-19665(-) (11)//scaffold_6:1857151-1857562(-) (11)	NA	P11891	"50S ribosomal protein 5, chloroplastic"	NA	NA	NA	NA	Medtr7g105340.1	"Plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32547.1.A1_at	A	A1TS	POPTR_0016s14430	POPTR_0016s14430 (11)	scaffold_16:13638680-13639630(-) (11)	NA	P93026	Vacuolar-sorting receptor 1	AT3G52850.1	vacuolar sorting receptor homolog 1 	LOC_Os11g02464.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr8g005600.1	"EGF-like calcium-binding; Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3259.1.A1_at	A	A1TS	POPTR_0002s09220	POPTR_0002s09220 (10)	scaffold_2:6532552-6533028(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32590.1.S1_at	A	A1TS	POPTR_0005s26450	POPTR_0005s26450 (11)	scaffold_5:24468294-24469383(+) (11)	NA	Q39255	SKP1-like protein 1A	AT1G75950.1	S phase kinase-associated protein 1 	LOC_Os11g26910.1	"SKP1-like protein 1B, putative, expressed"	Medtr5g022610.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.32590.2.A1_s_at	A	A1TS	POPTR_0002s02020	POPTR_0002s02020 (10)	scaffold_2:1078687-1078781(-) (10)	NA	Q9FHW7	SKP1-like protein 1B	AT5G42190.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 	LOC_Os11g26910.1	"SKP1-like protein 1B, putative, expressed"	Medtr5g022610.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.32594.1.S1_s_at	A	A1TS	POPTR_0013s02270	POPTR_0013s02270 (11)	scaffold_13:1355029-1356156(-) (11)	NA	Q99KU0	Transmembrane protein 49	AT4G14950.1	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3261.1.S1_s_at	A	A1TS	POPTR_0017s09230	POPTR_0017s09230 (11)	scaffold_17:7859561-7859889(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g43560.1	"TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32620.1.S1_at	A	A1TS	POPTR_0015s09960	POPTR_0015s09960 (9)	scaffold_15:11028238-11028763(+) (10)	NA	Q9STL8	Probable Ufm1-specific protease	AT3G48380.1	"Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 "	LOC_Os12g18760.2	"peptidase family C78 domain containing protein, expressed"	AC235753_17.1	Protein of unknown function DUF1671 AC235753.1 103660-96079 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32628.2.A1_a_at	A	A1TS	POPTR_0015s08470	POPTR_0015s08470 (11)	scaffold_15:9739751-9739950(+) (11)	NA	P42748	Ubiquitin-conjugating enzyme E2 4	AT5G41340.1	ubiquitin conjugating enzyme 4 	LOC_Os10g31000.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g125340.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.32628.2.A1_at	A	A1TS	POPTR_0015s08470	POPTR_0015s08470 (11)	scaffold_15:9739426-9739726(+) (11)	NA	P42748	Ubiquitin-conjugating enzyme E2 4	AT5G41340.1	ubiquitin conjugating enzyme 4 	LOC_Os10g31000.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g125340.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.32628.3.A1_a_at	A	A1TS	POPTR_0015s08470	POPTR_0015s08470 (11)	scaffold_15:9737732-9739004(+) (11)	NA	P42748	Ubiquitin-conjugating enzyme E2 4	AT5G41340.1	ubiquitin conjugating enzyme 4 	LOC_Os10g31000.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g125340.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.32646.3.A1_a_at	A	A1TS	POPTR_0018s13860	POPTR_0018s13860 (9)	scaffold_18:14149824-14153512(+) (9)	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23550.1	"basic helix-loop-helix family protein, putative, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.3266.1.A1_at	A	A1TS	POPTR_0003s07350	POPTR_0003s07350 (11)	scaffold_3:8919875-8920278(-) (11)	NA	P46254	"Heat shock 22 kDa protein, mitochondrial"	NA	NA	NA	NA	Medtr7g124360.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32661.1.S1_a_at	A	A2TS	POPTR_0675s00200	POPTR_1018s00210 (11)//POPTR_0675s00200 (11)	scaffold_1018:5264-5707(-) (11)//scaffold_675:7192-7635(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g48640.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034700.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.32661.2.S1_a_at	A	A2TS	POPTR_0675s00200	POPTR_1018s00210 (11)//POPTR_0675s00200 (11)	scaffold_1018:5274-5707(-) (11)//scaffold_675:7192-7625(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g48640.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034700.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.32666.1.A1_at	A	A1TS	POPTR_0014s07510	POPTR_0014s07510 (11)	scaffold_14:5641487-5642047(-) (11)	NA	P29620	Cyclin-dependent kinase D-1	AT1G73690.1	cyclin-dependent kinase D1;1 	LOC_Os05g32600.1	"cyclin-dependent kinase D-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32669.1.A1_s_at	A	A1TS	POPTR_0001s38450	POPTR_0001s38450 (11)	scaffold_1:37575995-37577160(+) (11)	NA	NA	NA	AT1G53210.1	sodium/calcium exchanger family protein / calcium-binding EF hand family protein 	LOC_Os02g14980.1	"calcium-binding EF hand family protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.32686.1.S1_s_at	A	A1TS	POPTR_0016s12570	POPTR_0016s12570 (11)	scaffold_16:11986537-11987162(-) (11)	NA	Q6GM29	Phosphatidylinositide phosphatase SAC1	AT3G51830.1	SAC domain-containing protein 8 	LOC_Os03g18080.2	"SacI homology domain containing protein, expressed"	Medtr5g023860.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32688.1.S1_at	A	A1TS	POPTR_0005s23210	POPTR_0005s23210 (11)	scaffold_5:22044292-22044641(-) (11)	NA	Q0WRC9	F-box protein SKIP17	AT4G02740.1	F-box/RNI-like superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3272.1.S1_at	A	A1TA	POPTR_0004s02670	POPTR_0004s02670 (11)	scaffold_4:1783346-1783903(+) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.32723.2.S1_s_at	A	A1TS	POPTR_0014s10000	POPTR_0014s10000 (9)	scaffold_14:7497980-7498287(+) (9)	NA	Q9MAM1	CBL-interacting serine/threonine-protein kinase 9	AT1G01140.1	CBL-interacting protein kinase 9 	LOC_Os03g03510.1	"CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g095470.2	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32788.1.S1_at	A	A1TA	POPTR_0017s13030	POPTR_0017s13030 (10)	scaffold_17:13182323-13182851(+) (10)	NA	O94260	Putative G3BP-like protein	AT5G60980.2	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os03g30550.1	"RNA-binding protein-like, putative, expressed"	Medtr7g062040.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.3280.1.S1_at	A	A1TS	POPTR_0009s15140	POPTR_0009s15140 (10)	scaffold_9:11760138-11760541(+) (10)	NA	NA	NA	AT2G27830.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g32580.1	expressed protein	Medtr4g073410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32818.1.S1_at	A	A1TS	POPTR_0001s03500	POPTR_0001s03500 (11)	scaffold_1:2818604-2820428(+) (11)	NA	Q3T0F2	Trafficking protein particle complex subunit 2	AT1G80500.1	SNARE-like superfamily protein 	LOC_Os02g40000.3	"trafficking protein particle complex subunit, putative, expressed"	Medtr3g142500.1	Longin-like 	GO:0006888|ER to Golgi vesicle-mediated transport	NA	GO:0005622|intracellular
PtpAffx.32818.3.A1_a_at	A	A2TS	POPTR_0001s03500	POPTR_0001s03500 (11)//POPTR_0003s18160 (10)	scaffold_1:2817032-2820049(+) (11)//scaffold_3:17348732-17350039(-) (10)	NA	Q3T0F2	Trafficking protein particle complex subunit 2	AT1G80500.1	SNARE-like superfamily protein 	LOC_Os02g40000.3	"trafficking protein particle complex subunit, putative, expressed"	Medtr3g142500.1	Longin-like 	GO:0006888|ER to Golgi vesicle-mediated transport	NA	GO:0005622|intracellular
PtpAffx.32828.1.S1_at	A	A1TS	POPTR_0008s17260	POPTR_0008s17260 (11)	scaffold_8:11595448-11596048(+) (11)	NA	Q8DGC4	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	AT1G48520.1	GLU-ADT subunit B 	LOC_Os11g34210.2	"aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed"	Medtr5g067700.1	"GatB, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.32828.2.S1_at	A	A1MS	POPTR_0008s17260	POPTR_0008s17260 (11)	scaffold_8:11593650-11594655(+) (11)	NA	Q8DGC4	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	AT1G48520.1	GLU-ADT subunit B 	LOC_Os11g34210.2	"aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed"	Medtr5g067700.1	"GatB, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.32840.2.S1_a_at	A	A1TS	POPTR_0002s07640	POPTR_0002s07640 (11)	scaffold_2:5224346-5224508(+) (11)	NA	Q0WT31	Probable methyltransferase PMT25	AT2G34300.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.32840.2.S1_at	A	A1TS	POPTR_0002s07640	POPTR_0002s07640 (11)	scaffold_2:5224383-5224602(+) (11)	NA	Q0WT31	Probable methyltransferase PMT25	AT2G34300.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.32845.1.S1_at	A	A1TS	POPTR_0014s18530	POPTR_0014s18530 (11)	scaffold_14:15798323-15798564(-) (11)	NA	Q9SZD4	26S proteasome regulatory subunit 4 homolog A	AT4G29040.1	regulatory particle AAA-ATPase 2A 	LOC_Os03g18690.1	"26S protease regulatory subunit 4, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.32854.1.A1_at	A	A1TS	POPTR_0003s11940	POPTR_0003s11940 (9)	scaffold_3:12657482-12658429(+) (9)	NA	Q8L3Z8	Protein FIZZY-RELATED 2	AT4G22910.1	FIZZY-related 2 	LOC_Os03g03150.2	"WD repeat-containing protein, putative, expressed"	Medtr5g008110.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32859.1.S1_at	A	A1TS	POPTR_0006s05250	POPTR_0006s05250 (10)	scaffold_6:3721463-3721519(+) (10)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.3	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.3286.1.A1_at	A	A1TS	POPTR_0001s28760	POPTR_0001s28760 (11)	scaffold_1:27532751-27534373(-) (11)	POPTR_0009s07970 (8)	Q55GU0	Probable serine/threonine-protein kinase DDB_G0267514	AT5G58520.1	Protein kinase superfamily protein 	LOC_Os03g18430.1	"protein kinase, putative, expressed"	Medtr5g080770.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32866.1.A1_s_at	A	A1TS	POPTR_0003s08390	POPTR_0003s08390 (11)	scaffold_3:9792196-9792440(-) (11)	NA	NA	NA	AT1G32740.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os02g46220.1	expressed protein	Medtr5g013870.1	"F6N18.12, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3287.1.S1_at	A	A1TA	POPTR_0014s12920	POPTR_0014s12920 (11)	scaffold_14:9517587-9518033(-) (11)	NA	NA	NA	AT4G03180.1	CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink). 	LOC_Os12g35270.1	expressed protein	Medtr7g129860.1	rRNA processing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32872.1.A1_at	A	A1TS	POPTR_0001s34550	POPTR_0001s34550 (9)	scaffold_1:32740618-32741049(+) (9)	NA	O49725	Probable purine permease 10	AT4G18210.1	purine permease 10 	LOC_Os02g46380.1	"purine permease, putative, expressed"	Medtr2g018910.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.32880.1.S1_at	A	A1TS	POPTR_0011s00680	POPTR_0011s00680 (9)	scaffold_11:336095-336486(-) (9)	NA	Q9SAK5	Myb family transcription factor APL	AT1G79430.2	Homeodomain-like superfamily protein 	LOC_Os06g45410.1	"MYB family transcription factor, putative, expressed"	Medtr5g027610.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32882.1.A1_at	A	A1TS	POPTR_0012s08570	POPTR_0012s08570 (11)	scaffold_12:9660868-9662882(-) (11)	NA	Q9FML2	Histone deacetylase 6	AT5G63110.1	histone deacetylase 6 	LOC_Os08g25570.1	"histone deacetylase, putative, expressed"	Medtr3g114600.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32885.1.A1_at	A	A1TS	POPTR_0006s03480	POPTR_0006s03480 (11)	scaffold_6:2251386-2252750(+) (11)	NA	Q8VY01	Serine carboxypeptidase-like 46	AT2G33530.1	serine carboxypeptidase-like 46 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.3289.1.S1_at	A	A1TA	POPTR_0001s33400	POPTR_0001s33400 (11)	scaffold_1:31587933-31588067(-) (11)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3289.1.S1_s_at	A	A1TS	POPTR_0012s10580	POPTR_0012s10580 (11)	scaffold_12:11312308-11312542(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3289.3.S1_at	A	A1TS	POPTR_0001s33400	POPTR_0001s33400 (10)	scaffold_1:31587497-31588218(+) (10)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32898.1.A1_s_at	A	A1TS	POPTR_0006s24840	POPTR_0006s24840 (11)	scaffold_6:23358969-23359511(-) (11)	NA	Q9SZJ5	"Serine hydroxymethyltransferase, mitochondrial"	AT4G32520.2	serine hydroxymethyltransferase 3 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr2g021910.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.32898.2.A1_at	A	A1MS	POPTR_0006s24840	POPTR_0006s24840 (11)	scaffold_6:23359349-23359482(-) (11)	NA	Q9SZJ5	"Serine hydroxymethyltransferase, mitochondrial"	AT4G32520.2	serine hydroxymethyltransferase 3 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr2g021910.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.32901.1.A1_at	A	A1TS	POPTR_0010s00480	POPTR_0010s00480 (11)	scaffold_10:241841-241883(+) (11)	NA	Q931Q4	GTP pyrophosphokinase	AT3G17470.1	Ca2+-activated RelA/spot homolog 	LOC_Os05g06890.1	"relA-SpoT like protein RSH4, putative, expressed"	Medtr8g134050.1	Calcium-binding EF-hand; RelA/SpoT 	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.32901.1.A1_s_at	A	A1TS	POPTR_0010s00480	POPTR_0010s00480 (11)	scaffold_10:241207-241757(+) (11)	NA	Q931Q4	GTP pyrophosphokinase	AT3G17470.1	Ca2+-activated RelA/spot homolog 	LOC_Os05g06890.1	"relA-SpoT like protein RSH4, putative, expressed"	Medtr8g134050.1	Calcium-binding EF-hand; RelA/SpoT 	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.32904.1.A1_at	A	A1TS	POPTR_0001s39060	POPTR_0001s39060 (9)	scaffold_1:38290030-38290246(-) (9)//scaffold_1:38317336-38317590(-) (10)	POPTR_0001s39090 (7)	Q39224	Protein SRG1	AT1G17020.1	senescence-related gene 1 	LOC_Os01g24980.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	AC235677_19.1	2OG-Fe(II) oxygenase AC235677.1 84535-88047 E EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.32905.1.A1_at	A	A1TS	POPTR_0007s11330	POPTR_0007s11330 (11)	scaffold_7:11703870-11705239(-) (11)	NA	B2VH13	Probable phosphoglycerate mutase gpmB	AT3G50520.1	Phosphoglycerate mutase family protein 	LOC_Os08g37140.1	"phosphoglycerate mutase, putative, expressed"	Medtr8g097040.1	Phosphoglycerate/bisphosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32910.1.A1_at	A	A1TS	POPTR_0003s19340	POPTR_0003s19340 (11)	scaffold_3:18096206-18096378(-) (11)	NA	Q96FV9	THO complex subunit 1	AT5G09860.1	nuclear matrix protein-related 	LOC_Os03g01970.1	"THO complex subunit 1, putative, expressed"	Medtr3g005340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32910.2.A1_at	A	A1TS	POPTR_0001s06900	POPTR_0001s06900 (11)	scaffold_1:5276428-5276941(+) (11)	NA	Q96FV9	THO complex subunit 1	AT5G09860.1	nuclear matrix protein-related 	LOC_Os03g01970.1	"THO complex subunit 1, putative, expressed"	Medtr3g005340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32910.3.A1_a_at	A	A1TS	POPTR_0003s19340	POPTR_0003s19340 (11)	scaffold_3:18096371-18097656(-) (11)	NA	Q96FV9	THO complex subunit 1	AT5G09860.1	nuclear matrix protein-related 	LOC_Os03g01970.1	"THO complex subunit 1, putative, expressed"	Medtr3g005340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32924.1.A1_at	A	A1TS	POPTR_0002s26030	POPTR_0002s26030 (11)	scaffold_2:23022865-23023314(+) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT4G14300.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os10g33230.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g105300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.32930.1.A1_at	A	A1TS	POPTR_0010s17530	POPTR_0010s17530 (9)	scaffold_10:16093751-16094020(+) (9)	NA	Q9S746	Protein HOTHEAD	AT1G14185.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os02g45530.1	"HOTHEAD precursor, putative, expressed"	Medtr5g044590.1	GMC oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.32931.1.S1_at	A	A1TS	POPTR_0007s04850	POPTR_0007s04850 (10)	scaffold_7:3036691-3036863(+) (10)	NA	Q8GXR9	"Probable NADH dehydrogenase, chloroplastic/mitochondrial"	AT5G08740.1	NAD(P)H dehydrogenase C1 	LOC_Os06g11140.1	"pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed"	Medtr4g143960.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.32933.1.A1_at	A	A1TS	POPTR_0379s00200	POPTR_0379s00200 (9)	scaffold_379:1329-1799(-) (10)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os10g04720.1	"TKL_IRAK_DUF26-la.5 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.3297.2.S1_a_at	A	A1TS	POPTR_0003s06610	POPTR_0003s06610 (11)	scaffold_3:8132103-8133545(+) (11)	NA	B0USF1	Nucleoside diphosphate kinase	AT1G17410.1	Nucleoside diphosphate kinase family protein 	LOC_Os02g35700.1	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32976.1.A1_at	A	A1TS	POPTR_0015s11450	POPTR_0015s11450 (11)	scaffold_15:12027564-12028078(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT5G50860.1	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr3g151070.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32976.2.A1_at	A	A1MS	POPTR_0012s10570	POPTR_0012s10570 (11)	scaffold_12:11299736-11300150(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT5G50860.1	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr3g151070.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32985.1.S1_at	A	A1TS	POPTR_0014s11500	POPTR_0014s11500 (11)	scaffold_14:8537646-8538083(+) (11)	NA	NA	NA	AT2G47360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02570.1); Has 58 Blast hits to 55 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g133040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32992.1.S1_at	A	A1TS	POPTR_0008s10220	POPTR_0008s10220 (11)	scaffold_8:6401907-6402349(+) (11)	NA	NA	NA	AT3G17130.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	NA	NA	Medtr2g037780.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.32993.1.A1_at	A	A1TS	POPTR_0006s27080	POPTR_0006s27080 (11)	scaffold_6:25097037-25097573(-) (11)	NA	NA	NA	AT4G32295.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3300.1.S1_s_at	A	A1TS	POPTR_0002s10850	POPTR_0002s10850 (11)	scaffold_2:7874641-7875585(-) (11)	NA	Q9T074	Phosphoenolpyruvate carboxykinase [ATP]	AT4G37870.1	phosphoenolpyruvate carboxykinase 1 	LOC_Os03g15050.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	Medtr5g032160.1	Phosphoenolpyruvate carboxykinase (ATP); 	GO:0044283|small molecule biosynthetic process||GO:0006094|gluconeogenesis||GO:0044281|small molecule metabolic process	GO:0004612|phosphoenolpyruvate carboxykinase (ATP) activity||GO:0005524|ATP binding	NA
PtpAffx.33000.1.S1_at	A	A1TS	POPTR_0007s11760	POPTR_0007s11760 (11)	scaffold_7:12150855-12151342(-) (11)	NA	NA	NA	AT4G37130.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g28019.1	"nucleoporin p58/p45, putative, expressed"	Medtr5g018450.1	"nucleoporin-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33010.1.S1_at	A	A2TS	POPTR_0001s11850	POPTR_0001s11850 (11)//POPTR_0003s15110 (11)	scaffold_1:9179990-9180114(-) (11)//scaffold_3:14968450-14968574(-) (11)	NA	Q9P2S5	WD repeat-containing protein 8	AT5G07590.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g41370.1	"WD repeat-containing protein 8, putative, expressed"	Medtr1g112040.1	"Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33015.1.A1_at	A	A1TS	POPTR_0001s21920	POPTR_0001s21920 (9)	scaffold_1:20411778-20412083(-) (9)	NA	Q4ZIN3	Membralin	AT1G60995.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Membralin (InterPro:IPR019144); Has 172 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). 	LOC_Os03g45770.1	expressed protein	Medtr2g006940.1	"S3 self-incompatibility locus-linked pollen 3.15 protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33015.1.A1_s_at	A	A1TS	POPTR_0001s21920	POPTR_0001s21920 (11)	scaffold_1:20411861-20412170(-) (11)	NA	Q4ZIN3	Membralin	AT1G60995.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Membralin (InterPro:IPR019144); Has 172 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). 	LOC_Os03g45770.1	expressed protein	Medtr2g006940.1	"S3 self-incompatibility locus-linked pollen 3.15 protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33018.2.A1_s_at	A	A1TS	POPTR_0013s13200	POPTR_0013s13200 (11)	scaffold_13:13746360-13749341(-) (11)	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT3G59780.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g67120.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g105210.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33019.1.S1_at	A	A1TA	POPTR_0015s06990	POPTR_0015s06990 (11)	scaffold_15:8056256-8056737(+) (11)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33044.1.S1_at	A	A1TS	POPTR_0005s27800	POPTR_0005s27800 (11)	scaffold_5:25289558-25290940(+) (11)	NA	Q9S720	"PsbP domain-containing protein 3, chloroplastic"	AT1G76450.1	Photosystem II reaction center PsbP family protein 	LOC_Os08g40160.1	"thylakoid lumen protein, chloroplast precursor, putative, expressed"	Medtr3g159860.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33059.1.S1_at	A	A1TS	POPTR_0013s00310	POPTR_0013s00310 (11)	scaffold_13:86537-87656(-) (11)	NA	O80536	Transcription factor PIF3	AT1G09530.2	phytochrome interacting factor 3 	LOC_Os01g18290.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g103000.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.33062.1.A1_at	A	A1TS	POPTR_0006s25800	POPTR_0006s25800 (11)	scaffold_6:24169287-24170374(+) (11)	NA	A7SDW5	Eukaryotic translation initiation factor 3 subunit L	AT5G25757.1	RNA polymerase I-associated factor PAF67 	LOC_Os05g13950.1	"eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed"	AC225507_7.1	"Eukaryotic translation initiation factor 3 subunit E-interactingprotein, related AC225507.11 33253-27252 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33063.1.A1_at	A	A1TS	POPTR_0001s42150	POPTR_0001s42150 (10)	scaffold_1:41909830-41910627(-) (11)	NA	Q70DU8	Aldehyde dehydrogenase family 3 member H1	AT1G44170.2	aldehyde dehydrogenase 3H1 	LOC_Os11g08300.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g143820.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.33074.1.S1_at	A	A1TS	POPTR_0003s14460	POPTR_0003s14460 (11)	scaffold_3:14539531-14542437(-) (11)	NA	O42901	Uncharacterized protein C119.09c	AT5G42000.1	ORMDL family protein 	LOC_Os07g26940.1	"ORM1, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.33081.1.S1_at	A	A1TS	POPTR_0004s22030	POPTR_0004s22030 (10)	scaffold_4:20969606-20970059(-) (10)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33101.2.S1_s_at	A	A1TS	POPTR_0009s09040	POPTR_0009s09040 (10)	scaffold_9:8123274-8124391(-) (10)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.3311.1.A1_at	A	A1TS	POPTR_0001s33570	POPTR_0001s33570 (11)	scaffold_1:31788394-31790603(-) (11)	NA	NA	NA	AT5G14105.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g44160.1	expressed protein	Medtr3g008890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3314.1.S1_at	A	A1TS	POPTR_0014s16490	POPTR_0014s16490 (11)	scaffold_14:12561645-12562128(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33154.1.S1_at	A	A1TS	POPTR_0002s08500	POPTR_0002s08500 (10)	scaffold_2:5936574-5937016(-) (10)	NA	NA	NA	AT1G44760.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g65440.1	"universal stress protein domain containing protein, putative, expressed"	Medtr3g097470.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.33212.1.A1_at	A	A1TS	POPTR_0006s21450	POPTR_0006s21450 (11)	scaffold_6:20525718-20526688(+) (11)	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.3	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33221.1.S1_at	A	A1TS	POPTR_0001s25480	POPTR_0001s25480 (10)	scaffold_1:24590848-24591347(+) (10)	NA	Q6ICL7	Solute carrier family 35 member E4	AT3G11320.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr3g092950.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.33221.2.S1_a_at	A	A1TS	POPTR_0001s25480	POPTR_0001s25480 (9)	scaffold_1:24589740-24590718(+) (9)	NA	Q6ICL7	Solute carrier family 35 member E4	AT3G11320.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr3g092950.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.33230.1.S1_a_at	A	A1TS	POPTR_0001s21420	POPTR_0001s21420 (11)	scaffold_1:19853567-19853701(-) (11)	NA	Q94F62	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	AT4G33430.1	BRI1-associated receptor kinase 	LOC_Os08g07760.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g008520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.33230.1.S1_at	A	A1TS	POPTR_0001s21420	POPTR_0001s21420 (11)	scaffold_1:19853506-19854037(-) (11)	NA	Q94F62	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	AT4G33430.1	BRI1-associated receptor kinase 	LOC_Os08g07760.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g008520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.33230.2.S1_at	A	A1TA	POPTR_0004s23520	POPTR_0004s23520 (9)	scaffold_4:22214708-22214828(+) (9)	NA	Q9ZRE2	Ras-related protein RABD1	AT3G11730.1	Ras-related small GTP-binding family protein 	LOC_Os05g01490.1	"ras-related protein, putative"	Medtr2g005330.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.33233.1.A1_a_at	A	A1TS	POPTR_0010s19060	POPTR_0010s19060 (11)	scaffold_10:17084873-17085084(-) (11)	NA	O80915	PRA1 family protein B4	AT2G38360.1	prenylated RAB acceptor 1.B4 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33233.1.A1_at	A	A1TS	POPTR_0010s19060	POPTR_0010s19060 (11)	scaffold_10:17085120-17085334(-) (11)	NA	O80915	PRA1 family protein B4	AT2G38360.1	prenylated RAB acceptor 1.B4 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3327.1.S1_s_at	A	A1TS	POPTR_0004s22080	POPTR_0004s22080 (11)	scaffold_4:21013924-21015299(+) (11)	NA	Q86VX9	Vacuolar fusion protein MON1 homolog A	AT2G28390.1	SAND family protein 	LOC_Os01g74460.2	"vacuolar fusion protein MON1 homolog A, putative, expressed"	Medtr2g110240.1	Yeast 73.5kDa hypothetical-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33293.1.S1_s_at	A	A1TS	POPTR_0001s19390	POPTR_0001s19390 (11)	scaffold_1:17032693-17032772(-) (11)	NA	Q91W34	UPF0420 protein C16orf58 homolog	AT3G45890.1	"Protein of unknown function, DUF647 "	LOC_Os04g22360.1	"DUF647 domain containing protein, putative, expressed"	Medtr5g025140.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33298.1.S1_at	A	A1TS	POPTR_0006s10610	POPTR_0006s10610 (9)	scaffold_6:7947821-7948257(-) (9)	POPTR_0016s13610 (6)	Q8RWU5	F-box/LRR-repeat protein 3	AT5G01720.1	RNI-like superfamily protein 	LOC_Os12g01760.1	"F-box/LRR domain containing protein, putative, expressed"	Medtr7g138390.1	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.33300.1.A1_at	A	A1TS	POPTR_0014s03820	POPTR_0014s03820 (10)	scaffold_14:3051506-3051928(-) (10)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT5G42650.1	allene oxide synthase 	LOC_Os03g55800.1	"cytochrome P450, putative, expressed"	Medtr4g093070.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33308.1.S1_at	A	A1TS	POPTR_0006s25480	POPTR_0006s25480 (9)	scaffold_6:23859590-23860091(+) (9)	NA	O82314	UPF0082 protein At2g25830	AT2G25830.1	YebC-related 	LOC_Os05g44350.1	"conserved uncharacterized protein, putative, expressed"	Medtr3g130610.1	"Integrase, N-terminal zinc-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3332.1.S1_at	A	A1MS	POPTR_0008s17400	POPTR_0008s17400 (9)	scaffold_8:11673869-11674282(+) (9)	NA	P42784	Carboxyl-terminal-processing protease	AT4G17740.1	Peptidase S41 family protein 	LOC_Os02g57060.1	"OsCttP2 - Putative C-terminal processing peptidase homologue, expressed"	Medtr1g087140.1	"Peptidase S41A, C-terminal protease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0005515|protein binding||GO:0008236|serine-type peptidase activity	NA
PtpAffx.33326.1.S1_at	A	A1TS	POPTR_0009s10560	POPTR_0009s10560 (11)	scaffold_9:9035723-9036361(+) (11)	NA	NA	NA	AT4G34419.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19200.1). 	LOC_Os09g28520.1	expressed protein	Medtr4g129510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33328.1.A1_a_at	A	A3MS	POPTR_0004s08270	POPTR_0101s00220 (11)//POPTR_0004s08270 (11)//POPTR_0067s00220 (11)	scaffold_1:29453702-29453749(+) (11)//scaffold_1:48066553-48066600(-) (11)//scaffold_1:48069801-48069848(-) (11)//scaffold_10:9172733-9172780(+) (11)//scaffold_101:19594-19641(-) (11)//scaffold_101:37182-37229(-) (11)//scaffold_1228:3031-3078(-) (11)//scaffold_18:12859017-12859064(+) (11)//scaffold_311:222-269(-) (11)//scaffold_4:6810648-6810695(+) (11)//scaffold_5:2105181-2105228(+) (11)//scaffold_5:11690551-11690598(-) (11)//scaffold_67:26292-26339(-) (11)//scaffold_8:7287089-7287136(+) (11)//scaffold_8:9446688-9446735(-) (11)//scaffold_8:9450074-9450121(-) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.2	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.33340.2.S1_a_at	A	A1TS	POPTR_0016s08070	POPTR_0016s08070 (11)	scaffold_16:5911811-5912655(-) (11)	NA	Q9AT35	60S ribosomal protein L23a	AT3G55280.2	ribosomal protein L23AB 	LOC_Os01g24690.1	"60S ribosomal protein L23A, putative, expressed"	Medtr4g079040.1	"Ribosomal protein L23, N-terminal; Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.33342.1.S1_at	A	A1MS	POPTR_0005s22880	POPTR_0005s22880 (10)	scaffold_5:21767697-21768247(+) (10)	NA	Q9SKX5	Probable polyamine oxidase 2	AT2G43020.1	polyamine oxidase 2 	LOC_Os04g53190.2	"CPuORF12 - conserved peptide uORF-containing transcript, expressed"	Medtr5g097430.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.33365.1.S1_at	A	A1TS	POPTR_0008s22440	POPTR_0008s22440 (11)	scaffold_8:16929906-16930666(+) (11)	NA	NA	NA	AT1G01490.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g03500.1	"heavy metal-associated domain containing protein, expressed"	Medtr7g088800.1	Heavy metal transport/detoxification protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3337.1.S1_a_at	A	A2TS	POPTR_0005s03620	POPTR_0013s02350 (11)//POPTR_0005s03620 (11)	scaffold_13:1408078-1408388(+) (11)//scaffold_17:6501550-6501602(+) (9)//scaffold_5:2421627-2421898(+) (11)	NA	NA	NA	AT3G05330.1	cyclin family 	LOC_Os02g26140.1	"microtubule-binding protein TANGLED1, putative, expressed"	Medtr7g139290.1	"microtubule binding protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33375.3.S1_a_at	A	A1TS	POPTR_0002s01970	POPTR_0002s01970 (11)	scaffold_2:1049584-1050530(+) (11)	NA	Q80ZQ9	UPF0436 protein C9orf6 homolog	AT1G75980.1	Single hybrid motif superfamily protein 	LOC_Os02g02810.1	expressed protein	Medtr3g157040.1	Single hybrid motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33379.1.S1_at	A	A1TS	POPTR_0014s13690	POPTR_0014s13690 (11)	scaffold_14:10033509-10033757(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3338.1.S1_at	A	A1TS	POPTR_0002s08450	POPTR_0002s08450 (11)	scaffold_2:5896177-5897187(-) (11)	POPTR_0005s19990 (6)	Q9CAP8	"Long chain acyl-CoA synthetase 9, chloroplastic"	AT1G77590.1	long chain acyl-CoA synthetase 9 	LOC_Os12g07110.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g100870.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.33391.1.S1_a_at	A	A1TS	POPTR_0006s27330	POPTR_0006s27330 (11)	scaffold_6:25271764-25272082(+) (11)//scaffold_6:25279341-25279640(+) (11)	NA	Q94A05	"Probable beta-1,3-galactosyltransferase 10"	AT4G32120.1	Galactosyltransferase family protein 	LOC_Os06g08005.1	"galactosyltransferase family protein, putative, expressed"	Medtr5g009800.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.33391.2.S1_a_at	A	A1TS	POPTR_0006s27330	POPTR_0006s27330 (11)	scaffold_6:25271764-25272071(+) (11)//scaffold_6:25279341-25279629(+) (11)	NA	Q94A05	"Probable beta-1,3-galactosyltransferase 10"	AT4G32120.1	Galactosyltransferase family protein 	LOC_Os06g08005.1	"galactosyltransferase family protein, putative, expressed"	Medtr5g009800.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.33399.1.S1_at	A	A1TS	POPTR_0006s14990	POPTR_0006s14990 (11)	scaffold_6:12467802-12468372(+) (11)	NA	NA	NA	AT2G19460.1	Protein of unknown function (DUF3511) 	LOC_Os03g19040.1	expressed protein	Medtr8g021330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33400.1.A1_at	A	A1TA	POPTR_0001s15630	POPTR_0001s15630 (11)	scaffold_1:12473289-12473785(+) (11)	NA	NA	NA	AT2G01410.1	NHL domain-containing protein 	LOC_Os01g42140.1	expressed protein	Medtr7g020710.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33411.1.S1_at	A	A1TS	POPTR_0006s05670	POPTR_0006s05670 (11)	scaffold_6:4011153-4011594(+) (11)	NA	Q42798	Cytochrome P450 93A1	AT2G42250.1	"cytochrome P450, family 712, subfamily A, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g111280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.33419.1.S1_at	A	A1TS	POPTR_0009s15530	POPTR_0009s15530 (9)	scaffold_9:11983237-11983734(-) (9)	NA	NA	NA	AT5G20970.1	HSP20-like chaperones superfamily protein 	LOC_Os03g45340.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr5g094550.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3342.1.A1_at	A	A1MS	POPTR_0008s07870	POPTR_0008s07870 (10)	scaffold_8:4838793-4839322(-) (10)	NA	Q84W55	"Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3"	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33439.1.A1_s_at	A	A1TS	POPTR_0005s09850	POPTR_0005s09850 (11)	scaffold_5:6930947-6931346(-) (11)	NA	NA	NA	AT1G79200.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g07420.1	"splicing factor, arginine/serine-rich 12, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3344.2.S1_at	A	A1TS	POPTR_0005s22080	POPTR_0005s22080 (11)	scaffold_5:21079994-21081010(+) (11)	NA	A9PBH9	Anamorsin homolog	AT5G18400.3	"Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis "	LOC_Os04g57810.2	"GA18008-PA, putative, expressed"	Medtr4g101340.1	Protein of unknown function DUF689 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3345.1.S1_at	A	A1TS	POPTR_0003s02700	POPTR_0003s02700 (11)	scaffold_3:2789636-2789951(+) (11)	NA	Q9LVZ8	Protein LURP-one-related 12	AT3G15810.1	Protein of unknown function (DUF567) 	LOC_Os01g56450.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126530.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33481.1.S1_at	A	A1TS	POPTR_0008s08440	POPTR_0008s08440 (11)	scaffold_8:5237218-5237549(+) (11)	NA	P93472	Cell elongation protein diminuto	AT3G19820.3	cell elongation protein / DWARF1 / DIMINUTO (DIM) 	LOC_Os10g25780.1	"FAD-linked oxidoreductase protein, putative, expressed"	NA	NA	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.33509.1.S1_at	A	A1TS	POPTR_0001s12320	POPTR_0001s12320 (11)	scaffold_1:9544300-9545172(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G44680.1	DNA glycosylase superfamily protein 	LOC_Os01g58550.1	"methyladenine glycosylase, putative, expressed"	Medtr2g085500.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.3351.1.S1_at	A	A1TS	POPTR_0007s12820	POPTR_0007s12820 (11)	scaffold_7:13069164-13069692(-) (11)	NA	Q5VZV1	UPF0567 protein C13orf39	AT5G49560.1	Putative methyltransferase family protein 	LOC_Os07g38220.1	expressed protein	Medtr8g093320.1	"UPF0567 protein LOC196541, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33518.1.A1_s_at	A	A1TS	POPTR_0006s12570	POPTR_0006s12570 (11)	scaffold_6:9718951-9720947(-) (11)	NA	A4QN59	Diphthamide biosynthesis protein 2	AT3G59630.1	diphthamide synthesis DPH2 family protein 	LOC_Os11g16430.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr1g009470.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33535.1.A1_at	A	A1TS	POPTR_0005s25480	POPTR_0005s25480 (11)	scaffold_5:23717760-23718346(-) (11)	NA	Q9SDZ9	Purple acid phosphatase 2	AT2G27190.1	purple acid phosphatase 12 	LOC_Os01g56880.1	"purple acid phosphatase precursor, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.33535.2.A1_at	A	A1TS	POPTR_0002s03080	POPTR_0002s03080 (11)	scaffold_2:1919024-1919519(+) (11)	NA	Q9SDZ9	Purple acid phosphatase 2	AT2G16430.2	purple acid phosphatase 10 	LOC_Os01g56880.1	"purple acid phosphatase precursor, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.33535.3.S1_at	A	A1TS	POPTR_0005s25480	POPTR_0005s25480 (9)	scaffold_5:23720443-23721133(-) (9)	NA	Q9SDZ9	Purple acid phosphatase 2	AT2G27190.1	purple acid phosphatase 12 	LOC_Os01g56880.1	"purple acid phosphatase precursor, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.33548.2.A1_at	A	A1TS	POPTR_0014s03110	POPTR_0014s03110 (11)	scaffold_14:2518288-2518792(-) (11)	NA	Q9FX08	Probable protein phosphatase 2C 12	AT1G47380.1	Protein phosphatase 2C family protein 	LOC_Os02g35910.1	"protein phosphotase protein, putative, expressed"	Medtr3g147960.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33549.1.S1_at	A	A1TS	POPTR_0010s16540	POPTR_0010s16540 (10)	scaffold_10:15469509-15469890(+) (10)	NA	O94260	Putative G3BP-like protein	AT1G13730.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os03g30550.1	"RNA-binding protein-like, putative, expressed"	Medtr4g115310.1	RNA-binding region RNP-1 (RNA recognition motif); Nuclear transport factor 2 	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.33551.1.S1_at	A	A1TS	POPTR_0018s09880	POPTR_0018s09880 (11)	scaffold_18:10934063-10934379(-) (11)	NA	P05348	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.2	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os02g05830.2	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr8g129230.2	"Ribulose bisphosphate carboxylase, small chain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33555.2.S1_at	A	A1TS	POPTR_0014s18630	POPTR_0014s18630 (10)	scaffold_14:15976627-15977135(+) (10)	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.33577.1.S1_at	A	A1TS	POPTR_0005s19110	POPTR_0005s19110 (11)	scaffold_5:17722620-17723871(-) (11)	NA	NA	NA	AT2G22570.1	nicotinamidase 1 	LOC_Os02g39400.1	"isochorismatase family protein, putative, expressed"	Medtr4g121200.1	Isochorismatase hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.33579.1.A1_at	A	A2TS	POPTR_0013s03560	POPTR_0013s03560 (11)//POPTR_0013s03430 (10)	scaffold_13:2121985-2122520(+) (10)//scaffold_13:2257921-2258456(-) (11)	NA	O23969	Pollen-specific protein SF21	AT5G56750.1	N-MYC downregulated-like 1 	LOC_Os01g09670.1	"pollen-specific protein SF21, putative, expressed"	Medtr1g096280.1	Ndr 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33582.1.A1_a_at	A	A3TS	POPTR_0001s35590	POPTR_0001s35590 (11)//POPTR_0001s35600 (11)//POPTR_0001s35580 (9)	scaffold_1:33907164-33907222(-) (9)//scaffold_1:33931992-33932275(-) (11)//scaffold_1:33939497-33939780(-) (11)	NA	Q9SV68	"Putative quinone-oxidoreductase homolog, chloroplastic"	AT4G13010.1	"Oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os09g32640.1	"dehydrogenase, putative, expressed"	Medtr7g062180.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.33582.2.A1_at	A	A1TS	POPTR_0001s35590	POPTR_0001s35590 (10)	scaffold_1:33931819-33932181(-) (10)	NA	Q9SV68	"Putative quinone-oxidoreductase homolog, chloroplastic"	AT4G13010.1	"Oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os09g32640.1	"dehydrogenase, putative, expressed"	Medtr7g062180.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.33585.1.A1_at	A	A1TS	POPTR_0010s25270	POPTR_0010s25270 (11)	scaffold_10:21024566-21025123(-) (11)	NA	Q9FF81	Vacuolar protein sorting-associated protein 36	AT5G04920.1	EAP30/Vps36 family protein 	LOC_Os01g59800.1	"EAP30/Vps36 family domain containing protein, expressed"	Medtr8g047910.1	Vacuolar protein sorting 36 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33586.1.S1_at	A	A1MS	POPTR_0005s05470	POPTR_0005s05470 (9)	scaffold_5:3619599-3622615(+) (9)	NA	Q99090	Light-inducible protein CPRF2	AT5G28770.2	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.33603.1.A1_a_at	A	A1TS	POPTR_0005s10320	POPTR_0005s10320 (11)	scaffold_5:7400401-7400591(+) (11)	NA	Q9UMX0	Ubiquilin-1	AT2G17200.1	ubiquitin family protein 	LOC_Os10g39620.2	"ubiquitin family protein, putative, expressed"	Medtr5g023730.1	UV excision repair protein Rad23; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33603.2.A1_at	A	A1MS	POPTR_0005s10320	POPTR_0005s10320 (11)	scaffold_5:7400278-7400763(+) (11)	NA	Q9UMX0	Ubiquilin-1	AT2G17200.1	ubiquitin family protein 	LOC_Os10g39620.2	"ubiquitin family protein, putative, expressed"	Medtr5g023730.1	UV excision repair protein Rad23; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33611.1.A1_at	A	A1TS	POPTR_0006s23340	POPTR_0006s23340 (11)	scaffold_6:22084167-22084521(+) (11)	NA	NA	NA	AT3G13000.2	"Protein of unknown function, DUF547 "	LOC_Os06g49060.1	"ternary complex factor MIP1, putative, expressed"	AC233653_9.1	Protein of unknown function DUF547 AC233653.2 46326-50755 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33656.1.S1_at	A	A2TS	POPTR_0001s41350	POPTR_0001s41350 (11)//POPTR_0011s12280 (9)	scaffold_1:40975643-40978292(-) (11)//scaffold_11:15034287-15036410(-) (9)	NA	Q8UVY2	Ribosome biogenesis protein BRX1 homolog	AT3G15460.1	Ribosomal RNA processing Brix domain protein 	LOC_Os02g37870.1	"Brix domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33672.1.S1_s_at	A	A1TS	POPTR_0002s00570	POPTR_0002s00570 (11)	scaffold_2:240889-241596(-) (11)	NA	P29057	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g094670.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
PtpAffx.33682.1.A1_at	A	A1TS	POPTR_0014s07960	POPTR_0014s07960 (10)	scaffold_14:5916676-5917917(+) (10)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47040.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3369.2.A1_s_at	A	A1TS	POPTR_0011s16260	POPTR_0011s16260 (11)	scaffold_11:18164497-18164888(-) (11)//scaffold_11:18213819-18214210(-) (11)//scaffold_11:18242410-18242801(-) (11)	POPTR_0011s16280 (6)//POPTR_0011s16380 (6)//POPTR_0011s16350 (6)//POPTR_0011s16330 (6)//POPTR_0011s16310 (6)	Q9SVG4	Reticuline oxidase-like protein	AT1G30760.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.33700.1.S1_at	A	A1TS	POPTR_0009s13130	POPTR_0009s13130 (10)	scaffold_9:10539422-10539821(+) (10)	NA	Q9T0I8	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1	AT4G38800.1	methylthioadenosine nucleosidase 1 	LOC_Os06g02220.1	"MTA/SAH nucleosidase, putative, expressed"	Medtr3g163220.2	"Purine and other phosphorylases, family 1 "	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.33703.1.S1_at	A	A2TS	POPTR_0009s04700	POPTR_0009s04700 (11)//POPTR_0001s25560 (9)	scaffold_1:24625887-24626203(-) (9)//scaffold_9:4971151-4971671(-) (11)	NA	NA	NA	AT5G58920.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g26020.1	expressed protein	Medtr5g078220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3372.1.S1_at	A	A1TS	POPTR_0908s00210	POPTR_0908s00210 (9)	scaffold_2:5877797-5879125(+) (9)//scaffold_908:6821-8152(+) (9)	POPTR_0002s08430 (8)	Q7Y1X1	Esterase	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g037600.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.33729.1.A1_at	A	A1TS	POPTR_0010s20030	POPTR_0010s20030 (10)	scaffold_10:17792044-17792526(+) (11)	NA	O04197	Coronatine-insensitive protein 1	AT2G39940.1	RNI-like superfamily protein 	LOC_Os05g37690.1	"OsFBL23 - F-box domain and LRR containing protein, expressed"	Medtr5g089200.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3373.1.A1_at	A	A1TS	POPTR_0014s18450	POPTR_0014s18450 (9)	scaffold_14:15662091-15662494(-) (10)	NA	Q4VCM1	Phospholipid--sterol O-acyltransferase	AT1G04010.1	phospholipid sterol acyl transferase 1 	LOC_Os02g56910.1	"lecithine cholesterol acyltransferase, putative"	Medtr7g116490.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
PtpAffx.33735.1.S1_s_at	A	A1TS	POPTR_0006s27940	POPTR_0006s27940 (11)	scaffold_6:25789716-25790075(+) (11)	NA	Q8W1D5	CBL-interacting serine/threonine-protein kinase 25	AT5G25110.1	CBL-interacting protein kinase 25 	LOC_Os09g25090.1	"CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g016620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.33745.1.S1_at	A	A1TS	POPTR_0017s14050	POPTR_0017s14050 (9)	scaffold_17:14210941-14211355(+) (11)	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT1G67230.1	little nuclei1 	LOC_Os02g48010.1	"nuclear matrix constituent protein 1-like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33750.1.A1_at	A	A1TS	POPTR_0007s14280	POPTR_0007s14280 (11)	scaffold_7:14114066-14114266(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G65470.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr5g033490.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33751.1.S1_at	A	A1TS	POPTR_0003s13230	POPTR_0003s13230 (11)	scaffold_3:13627730-13627882(-) (11)	NA	Q9M4W3	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic"	AT1G63970.1	isoprenoid F 	LOC_Os02g45660.1	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed"	Medtr5g010080.1	MECDP-synthase 	GO:0016114|terpenoid biosynthetic process	"GO:0008685|""2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"""	NA
PtpAffx.33787.1.A1_at	A	A1TS	POPTR_0004s10630	POPTR_0004s10630 (10)	scaffold_4:9158778-9159192(+) (10)	NA	O49858	Cytochrome P450 82A3	AT3G25180.1	"cytochrome P450, family 82, subfamily G, polypeptide 1 "	LOC_Os09g26980.1	"cytochrome P450, putative, expressed"	Medtr6g036420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.33824.1.S1_at	A	A1TS	POPTR_0018s06190	POPTR_0018s06190 (9)	scaffold_18:5901350-5902534(+) (9)	NA	NA	NA	AT3G24450.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g52160.1	"heavy metal-associated domain containing protein, expressed"	Medtr6g102150.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.3384.1.S1_a_at	A	A1TS	POPTR_0010s12020	POPTR_0010s12020 (11)	scaffold_10:12129546-12129940(-) (11)	NA	Q8LBH2	Putative clathrin assembly protein At2g01600	AT2G01600.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr2g042690.1	"Carbamoyl-phosphate synthase L chain, ATP-binding; ENTH/VHS; ANTH; "	NA	GO:0005543|phospholipid binding	NA
PtpAffx.3384.3.S1_a_at	A	A1TS	POPTR_0010s12020	POPTR_0010s12020 (11)	scaffold_10:12129421-12129517(-) (11)	NA	Q8LBH2	Putative clathrin assembly protein At2g01600	AT2G01600.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr2g042690.1	"Carbamoyl-phosphate synthase L chain, ATP-binding; ENTH/VHS; ANTH; "	NA	GO:0005543|phospholipid binding	NA
PtpAffx.3385.1.A1_at	A	A1TS	POPTR_0006s08490	POPTR_0006s08490 (9)	scaffold_6:6186581-6187050(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33895.2.S1_at	A	A1TA	POPTR_0003s19640	POPTR_0003s19640 (10)	scaffold_3:18321355-18321749(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33897.1.S1_at	A	A1TS	POPTR_0003s10510	POPTR_0003s10510 (11)	scaffold_3:11453333-11453869(+) (11)	NA	NA	NA	AT4G19430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g026440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3391.1.S1_at	A	A1MS	POPTR_0017s03050	POPTR_0017s03050 (11)	scaffold_17:2211233-2211747(-) (11)	NA	Q8RY22	Protease Do-like 7	AT3G03380.1	DegP protease 7 	LOC_Os02g48180.1	"OsDegp2 - Putative Deg protease homologue, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.33911.1.A1_at	A	A1TS	POPTR_0003s07490	POPTR_0003s07490 (11)	scaffold_3:9048750-9049302(-) (11)	NA	NA	NA	AT3G60580.1	C2H2-like zinc finger protein 	LOC_Os10g40660.1	"ZOS10-07 - C2H2 zinc finger protein, expressed"	Medtr8g105670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.33915.1.S1_at	A	A1TS	POPTR_0016s10740	POPTR_0016s10740 (11)	scaffold_16:9062514-9062774(+) (11)	NA	Q9SJL9	Probable xyloglucan endotransglucosylase/hydrolase protein 32	AT2G36870.1	xyloglucan endotransglucosylase/hydrolase 32 	LOC_Os07g29750.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr2g113780.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.33919.1.S1_at	A	A1TS	POPTR_0013s03870	POPTR_0013s03870 (11)	scaffold_13:2536740-2537339(+) (11)	NA	O24407	Auxin-responsive protein IAA16	AT3G04730.1	indoleacetic acid-induced protein 16 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.33919.2.A1_s_at	A	A1TS	POPTR_0005s05560	POPTR_0005s05560 (11)	scaffold_5:3682592-3682812(+) (11)	NA	P13089	Auxin-induced protein AUX28	AT3G04730.1	indoleacetic acid-induced protein 16 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.33924.2.S1_a_at	A	A1TS	POPTR_0017s05570	POPTR_0017s05570 (11)	scaffold_17:4393360-4393926(+) (11)	NA	Q9LND7	F-box protein SKIP16	AT1G06110.1	SKP1/ASK-interacting protein 16 	LOC_Os11g16390.1	expressed protein	Medtr4g092470.1	Cyclin-like F-box; ApaG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33939.1.S1_at	A	A1TS	POPTR_0015s08310	POPTR_0015s08310 (11)	scaffold_15:9565025-9565251(-) (11)	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.33939.2.S1_s_at	A	A1TS	POPTR_0012s07830	POPTR_0012s07830 (10)	scaffold_12:8777471-8777612(-) (10)	NA	Q9SIP7	40S ribosomal protein S3-1	AT2G31610.1	Ribosomal protein S3 family protein 	LOC_Os07g41750.1	"40S ribosomal protein S3-1, putative, expressed"	Medtr1g069030.1	Eukaryotic/archaeal ribosomal protein S3 	NA	GO:0003723|RNA binding	NA
PtpAffx.33971.1.S1_at	A	A1TS	POPTR_0007s09840	POPTR_0007s09840 (11)	scaffold_7:9385149-9386765(+) (11)	NA	Q6YXY2	Probable histone acetyltransferase HAC-like 1	AT5G67480.1	BTB and TAZ domain protein 4 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr5g015750.1	"Zinc finger, TAZ-type; BTB/POZ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.3398.2.S1_a_at	A	A1TS	POPTR_0022s00270	POPTR_0022s00270 (11)	scaffold_22:40207-40796(+) (11)	NA	P45743	Isochorismatase	AT5G23230.1	nicotinamidase 2 	LOC_Os04g44420.1	"isochorismatase family protein, putative, expressed"	Medtr1g046030.1	Isochorismatase hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.33993.1.A1_a_at	A	A1TS	POPTR_0006s09440	POPTR_0006s09440 (10)	scaffold_6:6946250-6946539(-) (10)	NA	Q8SAA5	Copper transporter 4	AT2G37925.1	copper transporter 4 	LOC_Os01g56420.1	"ctr copper transporter family protein, putative, expressed"	Medtr4g087380.1	Ctr copper transporter 	GO:0006825|copper ion transport	GO:0005375|copper ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.33998.1.A1_at	A	A1TS	POPTR_0003s10630	POPTR_0003s10630 (9)	scaffold_3:11552741-11553244(+) (9)	NA	NA	NA	AT4G39730.1	"Lipase/lipooxygenase, PLAT/LH2 family protein "	LOC_Os06g11812.1	"wound/stress protein, putative, expressed"	Medtr3g101380.1	"Lipase/lipooxygenase, PLAT/LH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3400.1.S1_a_at	A	A2TS	POPTR_0002s06840	POPTR_0002s06840 (11)//POPTR_0005s21470 (11)	scaffold_2:4589671-4589794(-) (11)//scaffold_5:20615913-20616036(+) (11)	NA	NA	NA	AT1G18740.1	Protein of unknown function (DUF793) 	LOC_Os12g06780.1	expressed protein	Medtr1g125110.1	Protein of unknown function DUF793 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3400.1.S1_at	A	A1TS	POPTR_0002s06840	POPTR_0002s06840 (11)	scaffold_2:4589457-4589935(-) (11)	NA	NA	NA	AT1G18740.1	Protein of unknown function (DUF793) 	LOC_Os12g06780.1	expressed protein	Medtr1g125110.1	Protein of unknown function DUF793 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3400.2.S1_a_at	A	A1TS	POPTR_0005s21470	POPTR_0005s21470 (11)	scaffold_5:20615716-20616087(+) (11)	NA	NA	NA	AT1G18740.1	Protein of unknown function (DUF793) 	LOC_Os12g06780.1	expressed protein	Medtr1g125110.1	Protein of unknown function DUF793 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3400.3.S1_at	A	A1TS	POPTR_0005s21470	POPTR_0005s21470 (11)	scaffold_5:20615849-20617099(+) (11)	NA	NA	NA	AT1G18740.1	Protein of unknown function (DUF793) 	LOC_Os12g06780.1	expressed protein	Medtr1g125110.1	Protein of unknown function DUF793 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3401.1.S1_at	A	A1TS	POPTR_0019s13170	POPTR_0019s13170 (9)	scaffold_19:14133872-14134614(-) (9)	NA	B9N2D0	UPF0497 membrane protein 10	AT1G03700.1	Uncharacterised protein family (UPF0497) 	LOC_Os05g15630.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3402.1.S1_at	A	A1TS	POPTR_0012s06370	POPTR_0012s06370 (11)	scaffold_12:6722433-6722841(-) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.34022.3.S1_a_at	A	A1TS	POPTR_0003s15680	POPTR_0003s15680 (11)	scaffold_3:15436369-15437005(+) (11)	NA	NA	NA	AT5G11680.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WW-domain-binding protein (InterPro:IPR018826); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os09g33800.2	"arabinogalactan protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34027.1.S1_a_at	A	A2TS	POPTR_0013s06940	POPTR_0019s06090 (11)//POPTR_0013s06940 (11)	scaffold_13:5641611-5643132(+) (11)//scaffold_19:6600708-6601970(-) (11)	NA	NA	NA	AT5G17620.1	CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g64920.1	"nuclear matrix protein 1, putative, expressed"	Medtr5g048890.1	Plant nuclear matrix 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34027.2.S1_at	A	A1TS	POPTR_0019s06090	POPTR_0019s06090 (9)	scaffold_19:6600604-6602519(-) (10)	NA	NA	NA	AT5G17620.1	CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g64920.1	"nuclear matrix protein 1, putative, expressed"	Medtr5g048890.1	Plant nuclear matrix 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3403.1.A1_at	A	A1TS	POPTR_0018s06340	POPTR_0018s06340 (11)	scaffold_1476:5014-5438(-) (10)//scaffold_18:6143806-6144281(-) (11)	NA	Q96HH6	Transmembrane protein 19	AT5G19930.2	"Protein of unknown function DUF92, transmembrane "	LOC_Os01g32280.1	"transmembrane protein, putative, expressed"	Medtr8g118660.1	"Protein of unknown function DUF92, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34030.1.S1_at	A	A1TS	POPTR_0001s25600	POPTR_0001s25600 (10)	scaffold_1:24675198-24675950(-) (10)	NA	Q9SBA7	Sugar transport protein 8	AT5G26250.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.3404.1.S1_s_at	A	A1TS	POPTR_0008s16850	POPTR_0008s16850 (11)	scaffold_8:11330612-11331889(+) (11)	NA	Q9QY93	dCTP pyrophosphatase 1	AT3G25400.1	"CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). "	LOC_Os04g43550.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	Medtr7g046000.1	MazG nucleotide pyrophosphohydrolase; Pyrophosphohydrolase MazG RS21-C6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34041.1.A1_at	A	A1TS	POPTR_0013s12390	POPTR_0013s12390 (11)	scaffold_13:13028971-13029245(-) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.3405.3.S1_at	A	A1TS	POPTR_0019s02430	POPTR_0019s02430 (11)	scaffold_19:2221101-2221505(-) (11)	NA	P55195	"Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment)"	AT2G37690.1	"phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative "	LOC_Os01g10280.1	"phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed"	Medtr1g094020.1	"1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; Sugar transporter superfamily; Phosphoribosylaminoimidazole carboxylase, ATPase subunit; "	GO:0006189|'de novo' IMP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004638|phosphoribosylaminoimidazole carboxylase activity	NA
PtpAffx.3405.4.S1_s_at	A	A1TS	POPTR_0013s04070	POPTR_0013s04070 (11)	scaffold_13:2703866-2704053(+) (11)	NA	P55195	"Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment)"	AT2G37690.1	"phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative "	LOC_Os01g10280.1	"phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed"	Medtr1g094020.1	"1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; Sugar transporter superfamily; Phosphoribosylaminoimidazole carboxylase, ATPase subunit; "	GO:0006189|'de novo' IMP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004638|phosphoribosylaminoimidazole carboxylase activity	NA
PtpAffx.34051.1.S1_at	A	A1TS	POPTR_0013s07170	POPTR_0013s07170 (10)	scaffold_13:5886741-5887243(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34076.1.S1_at	A	A1TS	POPTR_0011s02980	POPTR_0011s02980 (11)	scaffold_11:2936808-2937124(-) (11)	NA	P35694	Brassinosteroid-regulated protein BRU1	AT4G14130.1	xyloglucan endotransglucosylase/hydrolase 15 	LOC_Os06g48180.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr3g104520.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.34077.1.A1_at	A	A1TS	POPTR_0010s08860	POPTR_0010s08860 (11)	scaffold_10:9655115-9655661(-) (11)	NA	Q15436	Protein transport protein Sec23A	AT5G43670.1	Sec23/Sec24 protein transport family protein 	LOC_Os03g53140.3	"protein transport protein Sec23B, putative, expressed"	AC235009_42.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich AC235009.1 168398-171685 E EGN_Mt090430 200"	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.341.1.S1_at	A	A1TS	POPTR_0001s02270	POPTR_0001s02270 (11)	scaffold_1:1726026-1726533(-) (11)	NA	Q5M9F1	RNA-binding protein 34	AT5G46840.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g63730.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g029780.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.3410.1.S1_at	A	A1TA	POPTR_0017s11130	POPTR_0017s11130 (11)	scaffold_17:10796212-10796687(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34114.1.S1_at	A	A1TS	POPTR_0001s19990	POPTR_0001s19990 (11)	scaffold_1:17630235-17630311(-) (11)	NA	Q8KGF9	Uncharacterized RNA methyltransferase CT0009	AT3G21300.1	RNA methyltransferase family protein 	LOC_Os01g09750.2	"RNA methyltransferase protein, putative, expressed"	Medtr2g121790.1	23S rRNA methyltransferase/RumA; Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34114.1.S1_s_at	A	A1TS	POPTR_0001s19990	POPTR_0001s19990 (11)	scaffold_1:17628790-17630107(-) (11)	NA	Q8KGF9	Uncharacterized RNA methyltransferase CT0009	AT3G21300.1	RNA methyltransferase family protein 	LOC_Os01g09750.2	"RNA methyltransferase protein, putative, expressed"	Medtr2g121790.1	23S rRNA methyltransferase/RumA; Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3412.1.A1_at	A	A1TS	POPTR_0012s08410	POPTR_0012s08410 (9)	scaffold_12:9498087-9498397(+) (9)	NA	NA	NA	AT5G62960.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g03790.1	expressed protein	Medtr3g114140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34168.1.S1_at	A	A1MS	POPTR_0007s11910	POPTR_0007s11910 (9)	scaffold_7:12264772-12265047(+) (9)	NA	Q86K80	UPF0420 protein	AT2G23470.1	"Protein of unknown function, DUF647 "	LOC_Os01g66350.1	"DUF647 domain containing protein, putative, expressed"	Medtr7g064550.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34170.1.S1_s_at	A	A1TS	POPTR_0001s17970	POPTR_0001s17970 (10)	scaffold_1:14951913-14952231(-) (10)	NA	Q55E69	Protein SYS1 homolog	AT1G79990.1	structural molecules 	LOC_Os01g41040.1	"SCF apoptosis response protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34170.2.S1_at	A	A1TS	POPTR_0003s05480	POPTR_0003s05480 (11)	scaffold_3:6761778-6762176(+) (11)	NA	Q55E69	Protein SYS1 homolog	AT1G79990.1	structural molecules 	LOC_Os01g41040.1	"SCF apoptosis response protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34171.1.S1_at	A	A1TA	POPTR_0006s09340	POPTR_0006s09340 (11)	scaffold_6:6866138-6866380(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34171.2.S1_a_at	A	A1TA	POPTR_0006s09340	POPTR_0006s09340 (11)	scaffold_6:6865676-6866084(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34172.1.S1_s_at	A	A1TS	POPTR_0008s09750	POPTR_0008s09750 (11)	scaffold_8:6028179-6028495(-) (11)	NA	Q94JW8	Squamosa promoter-binding-like protein 6	AT1G69170.1	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os09g32944.1	"OsSPL18 - SBP-box gene family member, expressed"	Medtr5g048960.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.34173.1.S1_at	A	A1TS	POPTR_0011s05270	POPTR_0011s05270 (11)	scaffold_11:5149442-5149965(-) (11)	NA	NA	NA	AT3G15358.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53035.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g017280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34198.1.A1_at	A	A1MA	POPTR_0001s33610	POPTR_0001s33610 (11)	scaffold_1:31842872-31843431(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34198.2.S1_at	A	A1TS	POPTR_0001s33610	POPTR_0001s33610 (11)	scaffold_1:31842719-31843410(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.342.1.S1_s_at	A	A1TS	POPTR_0010s13510	POPTR_0010s13510 (11)	scaffold_10:13332289-13332791(-) (11)	NA	Q9XF43	3-ketoacyl-CoA synthase 6	AT1G68530.1	3-ketoacyl-CoA synthase 6 	LOC_Os03g12030.1	"3-ketoacyl-CoA synthase, putative, expressed"	AC233660_47.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase AC233660.2 190599-188614 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.34207.1.S1_at	A	A1MS	POPTR_0011s09030	POPTR_0011s09030 (10)	scaffold_11:11095173-11095677(+) (10)	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.3421.1.A1_at	A	A1TS	POPTR_0008s06870	POPTR_0008s06870 (10)	scaffold_8:4121566-4121994(-) (10)	NA	Q9D880	Mitochondrial import inner membrane translocase subunit TIM50	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34213.1.S1_at	A	A1TS	POPTR_0013s08130	POPTR_0013s08130 (11)	scaffold_13:7114783-7115255(-) (11)	NA	A7NY33	Peroxidase 4	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os11g02130.1	"peroxidase precursor, putative, expressed"	Medtr5g091290.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.3422.1.S1_at	A	A1TS	POPTR_0002s13650	POPTR_0002s13650 (11)	scaffold_2:10130487-10130990(-) (11)	NA	O80501	Ras-related protein RABH1B	AT2G44610.1	Ras-related small GTP-binding family protein 	LOC_Os07g31370.1	"ras-related protein, putative, expressed"	Medtr5g014080.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.34228.1.S1_at	A	A1TS	POPTR_0010s24930	POPTR_0010s24930 (11)	scaffold_10:20882350-20882643(+) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr4g066990.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.34243.1.A1_at	A	A1TS	POPTR_0007s12570	POPTR_0007s12570 (10)	scaffold_7:12857844-12858331(+) (10)	NA	Q15427	Splicing factor 3B subunit 4	AT2G18510.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os10g31900.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g087340.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.3425.1.S1_at	A	A1TS	POPTR_0009s09890	POPTR_0009s09890 (11)	scaffold_9:8656340-8656862(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr5g016440.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34269.1.S1_at	A	A1TS	POPTR_0012s12870	POPTR_0012s12870 (11)	scaffold_12:13248068-13250451(-) (11)	NA	A9IVX6	30S ribosomal protein S9	AT3G49080.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os07g46440.1	"ribosomal protein, putative, expressed"	Medtr1g025880.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.34279.1.A1_at	A	A1TS	POPTR_0017s12040	POPTR_0017s12040 (11)	scaffold_17:12176355-12176551(-) (11)	NA	Q43847	"Granule-bound starch synthase 2, chloroplastic/amyloplastic"	AT3G01180.1	starch synthase 2 	LOC_Os10g30156.1	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.3428.1.A1_a_at	A	A1TS	POPTR_0010s20070	POPTR_0010s20070 (11)	scaffold_10:17815047-17815617(-) (11)	NA	P44797	Adenylosuccinate lyase	AT1G36280.1	L-Aspartase-like family protein 	LOC_Os03g19930.1	"adenylosuccinate lyase, putative, expressed"	Medtr7g111520.1	Fumarate lyase; Adenylosuccinate lyase 	GO:0044281|small molecule metabolic process||GO:0006188|IMP biosynthetic process	"GO:0004018|""N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"""	NA
PtpAffx.3428.2.A1_at	A	A1MS	POPTR_0010s20070	POPTR_0010s20070 (9)	scaffold_10:17815115-17815285(-) (9)	NA	P44797	Adenylosuccinate lyase	AT1G36280.1	L-Aspartase-like family protein 	LOC_Os03g19930.1	"adenylosuccinate lyase, putative, expressed"	Medtr7g111520.1	Fumarate lyase; Adenylosuccinate lyase 	GO:0044281|small molecule metabolic process||GO:0006188|IMP biosynthetic process	"GO:0004018|""N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"""	NA
PtpAffx.3429.2.S1_at	A	A2TS	POPTR_0008s02400	POPTR_0008s02400 (11)//POPTR_0008s02410 (11)	scaffold_8:1165739-1166261(+) (11)//scaffold_8:1172203-1172725(+) (11)	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	NA	NA	Medtr5g028460.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3429.3.S1_at	A	A1TS	POPTR_0008s02350	POPTR_0008s02350 (11)	scaffold_8:1130679-1130835(+) (11)	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr5g098460.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34296.1.S1_a_at	A	A2TS	POPTR_0001s34780	POPTR_0017s11010 (11)//POPTR_0001s34780 (11)	scaffold_1:33017995-33018332(+) (11)//scaffold_17:10657816-10658144(-) (11)	NA	NA	NA	AT5G40190.1	RNA ligase/cyclic nucleotide phosphodiesterase family protein 	LOC_Os09g20860.1	"calmodulin-binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34296.2.S1_at	A	A1TS	POPTR_0001s34780	POPTR_0001s34780 (11)	scaffold_1:33017897-33018305(+) (11)	NA	NA	NA	AT5G40190.1	RNA ligase/cyclic nucleotide phosphodiesterase family protein 	LOC_Os09g20860.1	"calmodulin-binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.343.1.S1_at	A	A1TS	POPTR_0010s20250	POPTR_0010s20250 (9)	scaffold_10:17921176-17921636(-) (9)	POPTR_0010s20270 (6)	Q9FIA0	Cytokinin-N-glucosyltransferase 2	AT3G11340.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g60960.1	"cytokinin-N-glucosyltransferase 1, putative, expressed"	Medtr3g092670.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3430.2.S1_a_at	A	A1TS	POPTR_0001s14480	POPTR_0001s14480 (11)	scaffold_1:11369462-11369694(+) (11)	NA	Q43621	"Glutathione reductase, cytosolic"	AT3G24170.3	glutathione-disulfide reductase 	LOC_Os02g56850.3	"glutathione reductase, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
PtpAffx.34318.1.S1_at	A	A1TS	POPTR_0003s10170	POPTR_0003s10170 (9)	scaffold_3:11269583-11269930(-) (9)	NA	Q6NY74	Replication protein A 70 kDa DNA-binding subunit	AT5G45400.1	Replication factor-A protein 1-related 	LOC_Os05g02040.1	"RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.34354.1.S1_at	A	A1TS	POPTR_0014s08980	POPTR_0014s08980 (9)	scaffold_14:6627583-6628147(-) (9)	NA	Q9M153	GDSL esterase/lipase At4g01130	AT4G01130.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os06g06520.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143540.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.34358.1.S1_at	A	A1TS	POPTR_0001s25380	POPTR_0001s25380 (11)	scaffold_1:24521164-24522163(+) (11)	NA	Q5XK67	DNA-directed RNA polymerases I and III subunit RPAC2	AT2G29540.2	RNApolymerase 14 kDa subunit 	LOC_Os12g09280.1	"RNA polymerase subunit, putative, expressed"	Medtr3g093910.1	"RNA polymerase, RBP11-like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.34370.1.S1_at	A	A1TS	POPTR_0013s11330	POPTR_0013s11330 (11)	scaffold_13:11983570-11984092(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT4G24660.1	homeobox protein 22 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr7g035120.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34376.2.S1_at	A	A1MS	POPTR_0003s12980	POPTR_0003s12980 (10)	scaffold_3:13399058-13399613(-) (10)	NA	P42749	Ubiquitin-conjugating enzyme E2 5	AT1G63800.1	ubiquitin-conjugating enzyme 5 	LOC_Os10g31000.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g125340.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.34381.1.A1_at	A	A1TS	POPTR_0015s03380	POPTR_0015s03380 (10)	scaffold_15:2891664-2892359(+) (10)	NA	Q8IWF6	Protein FAM116A	AT1G73930.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g15390.1	"GA17271-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34384.1.S1_s_at	A	A1TS	POPTR_0017s06220	POPTR_0017s06220 (11)	scaffold_17:4800375-4800752(+) (11)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr1g087380.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.3439.1.S1_at	A	A1TS	POPTR_0005s05400	POPTR_0005s05400 (9)	scaffold_5:3563879-3564953(-) (9)	NA	P40691	Auxin-induced protein PCNT115	AT1G60710.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g28320.3	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g140850.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.34391.1.S1_at	A	A1TS	POPTR_0003s06020	POPTR_0003s06020 (11)	scaffold_3:7400539-7400743(+) (11)	NA	O14111	C2 domain-containing protein C31G5.15	AT5G57190.1	phosphatidylserine decarboxylase 2 	LOC_Os01g72940.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr2g008340.1	C2; Calcium-binding EF-hand; Phosphatidylserine decarboxylase 	GO:0008654|phospholipid biosynthetic process	GO:0004609|phosphatidylserine decarboxylase activity	NA
PtpAffx.3440.1.S1_at	A	A1TS	POPTR_0019s02610	POPTR_0019s02610 (10)	scaffold_19:2410446-2410977(+) (10)	NA	Q6NQG7	RING-H2 finger protein ATL78	AT1G49230.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr3g144110.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3441.1.S1_at	A	A1TS	POPTR_0005s00300	POPTR_0005s00300 (11)	scaffold_5:67502-67729(+) (11)	NA	O13775	"Probable glutamyl-tRNA synthetase, cytoplasmic"	AT5G26710.1	"Glutamyl/glutaminyl-tRNA synthetase, class Ic "	LOC_Os01g16520.1	"glutamyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr1g103230.1	"Glutamyl-tRNA synthetase, class Ic; Glutaminyl-tRNA synthetase; Glutathione S-transferase, C-terminal-like "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.34417.1.S1_at	A	A1TS	POPTR_0006s20240	POPTR_0006s20240 (11)	scaffold_6:19292272-19292834(-) (11)	NA	Q7ZVZ7	Abhydrolase domain-containing protein FAM108C1	AT4G31020.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g55330.2	"OsPOP6 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3442.1.S1_at	A	A1TS	POPTR_0010s01690	POPTR_0010s01690 (11)	scaffold_10:1879533-1879636(-) (11)	NA	Q6ZQK0	Condensin-2 complex subunit D3	AT4G15890.1	binding 	LOC_Os12g36170.1	"HEAT repeat family protein, putative, expressed"	Medtr7g134000.1	"Condensin-2 complex subunit D3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34427.1.A1_at	A	A1TS	POPTR_0005s09690	POPTR_0005s09690 (11)	scaffold_5:6780494-6781026(+) (11)	NA	NA	NA	AT1G65032.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g46839.1	expressed protein	Medtr4g108170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34428.1.S1_at	A	A1TA	POPTR_0019s00330	POPTR_0019s00330 (9)	scaffold_19:106347-106912(-) (9)	NA	Q9C810	PHD finger protein At1g33420	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g65600.1	"PHD-finger domain containing protein, putative, expressed"	Medtr4g041260.1	"Protein of unknown function UPF0054; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34437.1.S1_at	A	A1TS	POPTR_0003s15870	POPTR_0003s15870 (11)	scaffold_3:15554235-15554638(-) (11)	NA	NA	NA	AT3G16510.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr7g099470.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34437.2.S1_at	A	A1TS	POPTR_0001s12710	POPTR_0001s12710 (11)	scaffold_1:9852324-9852823(-) (11)	NA	NA	NA	AT3G16510.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr7g099470.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34439.1.S1_at	A	A1TS	POPTR_0010s00500	POPTR_0010s00500 (11)	scaffold_10:254614-255054(-) (11)	NA	P13940	Late embryogenesis abundant protein D-29	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3445.1.S1_at	A	A1TS	POPTR_0016s10590	POPTR_0016s10590 (11)	scaffold_16:8888734-8889542(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34474.1.S1_at	A	A1TS	POPTR_0004s06000	POPTR_0004s06000 (11)	scaffold_4:4731601-4732070(+) (11)	NA	Q9LMI0	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7"	AT1G06410.1	trehalose-phosphatase/synthase 7 	LOC_Os01g54560.1	"trehalose synthase, putative, expressed"	Medtr4g110050.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.34478.1.A1_s_at	A	A1TS	POPTR_0003s07230	POPTR_0003s07230 (11)	scaffold_3:8820638-8820954(+) (11)	NA	O64765	Probable UDP-N-acetylglucosamine pyrophosphorylase	AT1G31070.2	N-acetylglucosamine-1-phosphate uridylyltransferase 1 	LOC_Os08g10600.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.34481.1.A1_at	A	A1TS	POPTR_0013s06910	POPTR_0013s06910 (11)	scaffold_13:5607593-5608114(-) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G17630.1	Nucleotide/sugar transporter family protein 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr2g034800.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.34482.1.S1_s_at	A	A1TS	POPTR_0016s06660	POPTR_0016s06660 (9)	scaffold_16:4467393-4467649(+) (11)	NA	NA	NA	AT3G11690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g42650.1	"pollen preferential protein, putative, expressed"	Medtr2g104580.1	"pollen preferential protein^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3449.2.S1_a_at	A	A1TS	POPTR_0019s02520	POPTR_0019s02520 (11)	scaffold_19:2269714-2270164(-) (11)//scaffold_19:2284375-2284825(-) (11)	POPTR_0019s02490 (7)	Q5ZJH6	Serine/threonine-protein kinase ULK3	AT1G49180.2	protein kinase family protein 	LOC_Os04g58990.1	"CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g144060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.345.1.A1_a_at	A	A1TS	POPTR_0001s27020	POPTR_0001s27020 (11)	scaffold_1:25979472-25980637(-) (11)	NA	Q8H159	Polyubiquitin 10	AT4G05320.6	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr4g110760.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34524.3.A1_a_at	A	A1TS	POPTR_0005s19220	POPTR_0005s19220 (11)	scaffold_5:17892521-17893040(-) (11)	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g56050.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.34524.4.A1_at	A	A1TA	POPTR_0002s11550	POPTR_0002s11550 (10)	scaffold_2:8616259-8616705(+) (11)	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g56050.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.34527.2.A1_a_at	A	A1TS	POPTR_0005s07810	POPTR_0005s07810 (11)	scaffold_5:5352259-5352818(-) (11)	NA	NA	NA	AT4G39840.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink). 	LOC_Os09g20540.1	conserved hypothetical protein	Medtr3g101480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34571.2.S1_at	A	A1TS	POPTR_0010s19870	POPTR_0010s19870 (11)	scaffold_10:17658528-17658913(+) (11)	NA	NA	NA	AT2G40000.1	ortholog of sugar beet HS1 PRO-1 2 	LOC_Os01g63690.1	"hs1, putative, expressed"	Medtr3g093280.1	"Hs1pro-1, C-terminal; Hs1pro-1, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34577.1.A1_at	A	A1TS	POPTR_0002s10750	POPTR_0002s10750 (11)	scaffold_2:7802678-7803459(+) (11)	NA	Q9FE59	Sucrose transport protein SUC4	AT1G09960.1	sucrose transporter 4 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3459.2.S1_s_at	A	A1TS	POPTR_0002s12740	POPTR_0002s12740 (11)	scaffold_2:9490366-9490785(+) (11)	NA	Q9NBK5	Serine/threonine-protein kinase tricorner	AT5G09890.1	Protein kinase family protein 	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g024310.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.3459.3.A1_a_at	A	A2MS	POPTR_0002s20650	POPTR_0002s20650 (11)//POPTR_0014s12440 (11)	scaffold_14:9178126-9178223(+) (11)//scaffold_2:16724505-16724602(+) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT1G02840.3	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os05g30140.1	"RNA recognition motif containing protein, expressed"	Medtr8g068270.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.3459.5.A1_at	A	A1MS	POPTR_0014s12440	POPTR_0014s12440 (11)	scaffold_14:9178335-9178588(+) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT1G02840.3	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr8g068270.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.34591.1.S1_s_at	A	A1TS	POPTR_0017s03050	POPTR_0017s03050 (11)	scaffold_17:2202202-2202650(-) (11)	NA	Q8RY22	Protease Do-like 7	AT3G03380.1	DegP protease 7 	LOC_Os02g48180.1	"OsDegp2 - Putative Deg protease homologue, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.3460.1.S1_a_at	A	A1TS	POPTR_0002s25230	POPTR_0002s25230 (11)	scaffold_2:22377538-22377635(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3460.1.S1_x_at	A	A1TS	POPTR_0002s25230	POPTR_0002s25230 (11)	scaffold_2:22377538-22378655(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3461.1.S1_at	A	A1TS	POPTR_0006s03920	POPTR_0006s03920 (11)	scaffold_6:2636890-2638319(-) (11)	NA	Q5HZL9	Haloacid dehalogenase-like hydrolase domain-containing protein 3	AT2G41250.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g46520.1	"rhythmically expressed gene 2 protein, putative, expressed"	Medtr7g107400.1	"HAD-superfamily subfamily IA hydrolase, REG-2-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.3461.2.S1_a_at	A	A2TS	POPTR_0006s03920	POPTR_0006s03920 (11)//POPTR_0016s03710 (11)	scaffold_16:2061910-2062672(-) (10)//scaffold_6:2637693-2638381(-) (11)	NA	Q5HZL9	Haloacid dehalogenase-like hydrolase domain-containing protein 3	AT2G41250.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g46520.1	"rhythmically expressed gene 2 protein, putative, expressed"	Medtr7g107400.1	"HAD-superfamily subfamily IA hydrolase, REG-2-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.3461.2.S1_at	A	A1TS	POPTR_0016s03710	POPTR_0016s03710 (11)	scaffold_16:2061015-2062652(-) (11)	NA	Q5HZL9	Haloacid dehalogenase-like hydrolase domain-containing protein 3	AT2G41250.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g46520.1	"rhythmically expressed gene 2 protein, putative, expressed"	Medtr7g107400.1	"HAD-superfamily subfamily IA hydrolase, REG-2-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.34615.1.S1_at	A	A1TS	POPTR_0011s01630	POPTR_0011s01630 (11)	scaffold_11:1140287-1140860(+) (11)	NA	Q8L8L9	Uncharacterized protein At4g22160	AT4G22160.2	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34615.2.A1_at	A	A1TS	POPTR_0004s00580	POPTR_0004s00580 (11)	scaffold_4:220530-221088(-) (11)	NA	Q8L8L9	Uncharacterized protein At4g22160	AT4G22160.2	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34618.1.S1_at	A	A1TS	POPTR_0003s11540	POPTR_0003s11540 (11)	scaffold_3:12323736-12324482(+) (11)	NA	Q9C5X3	SNARE-interacting protein KEULE	AT1G12360.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os02g25580.1	"Sec1 family transport protein, putative, expressed"	Medtr8g106730.1	Sec1-like protein 	GO:0006904|vesicle docking during exocytosis	NA	NA
PtpAffx.3462.1.A1_a_at	A	A1TS	POPTR_0006s22130	POPTR_0006s22130 (11)	scaffold_6:21192832-21192967(-) (11)	NA	Q9C5R8	"2-Cys peroxiredoxin BAS1-like, chloroplastic"	AT5G06290.1	2-cysteine peroxiredoxin B 	LOC_Os02g33450.2	"peroxiredoxin, putative, expressed"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.3462.1.A1_s_at	A	A2TS	POPTR_0006s22130	POPTR_0006s22130 (11)//POPTR_0016s07280 (11)	scaffold_16:5173683-5174412(-) (11)//scaffold_6:21192967-21193887(-) (11)	NA	Q9C5R8	"2-Cys peroxiredoxin BAS1-like, chloroplastic"	AT5G06290.1	2-cysteine peroxiredoxin B 	LOC_Os02g33450.2	"peroxiredoxin, putative, expressed"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.3462.3.S1_s_at	A	A1TS	POPTR_0016s07280	POPTR_0016s07280 (11)	scaffold_16:5173474-5173647(-) (11)	NA	Q9C5R8	"2-Cys peroxiredoxin BAS1-like, chloroplastic"	AT5G06290.1	2-cysteine peroxiredoxin B 	LOC_Os02g33450.2	"peroxiredoxin, putative, expressed"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.34627.1.A1_at	A	A1TS	POPTR_0002s24990	POPTR_0002s24990 (11)	scaffold_2:22184991-22185703(-) (11)	NA	Q9SRT2	Transcription factor bHLH62	AT3G07340.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr8g012630.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.34645.1.S1_s_at	A	A1TS	POPTR_0002s24320	POPTR_0002s24320 (11)	scaffold_2:21728033-21728945(+) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr7g064530.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34656.1.S1_at	A	A1TS	POPTR_0003s02730	POPTR_0003s02730 (9)	scaffold_3:2799154-2799592(-) (9)	NA	Q41142	Phospholipase D alpha 1	AT3G15730.1	phospholipase D alpha 1 	LOC_Os01g07760.2	"phospholipase D, putative, expressed"	Medtr2g126370.1	"C2; Peptidase, cysteine peptidase active site "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.34699.2.S1_a_at	A	A2TS	POPTR_0005s12700	POPTR_0005s12700 (11)//POPTR_0007s12550 (11)	scaffold_5:9445900-9446443(-) (11)//scaffold_7:12845980-12846522(+) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT4G36690.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.34699.2.S1_at	A	A1MS	POPTR_0007s12550	POPTR_0007s12550 (10)	scaffold_7:12846024-12846401(+) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT4G36690.4	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.34700.1.S1_at	A	A1TS	POPTR_0018s11960	POPTR_0018s11960 (9)	scaffold_18:12589666-12590705(-) (9)	NA	Q9FGT7	Two-component response regulator ARR18	AT2G25180.1	response regulator 12 	LOC_Os02g55320.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.34704.1.S1_at	A	A1TS	POPTR_0001s46400	POPTR_0001s46400 (11)	scaffold_1:46788078-46788451(-) (11)	NA	Q9SA77	UDP-arabinose 4-epimerase 1	AT1G30620.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g04690.2	"UDP-arabinose 4-epimerase 1, putative, expressed"	Medtr4g137730.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.34705.1.S1_s_at	A	A1TS	POPTR_0013s11750	POPTR_0013s11750 (11)	scaffold_13:12419418-12421795(-) (11)	NA	NA	NA	AT1G65280.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g33800.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34708.1.S1_s_at	A	A1TS	POPTR_0002s14080	POPTR_0002s14080 (11)	scaffold_2:10430353-10430615(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.1	casein kinase II  beta chain 1 	LOC_Os10g41520.1	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
PtpAffx.34708.2.S1_at	A	A1TS	POPTR_0012s04520	POPTR_0012s04520 (11)	scaffold_12:3815214-3815581(+) (11)	NA	P50699	Thaumatin-like protein	AT1G73620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os06g47600.1	"thaumatin family domain containing protein, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34708.3.S1_s_at	A	A1TS	POPTR_0006s25050	POPTR_0006s25050 (9)	scaffold_6:23493721-23493833(-) (9)	NA	Q8VY07	Clathrin interactor EPSIN 1	AT5G11710.1	ENTH/VHS family protein 	LOC_Os04g51120.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34726.1.S1_at	A	A1TS	POPTR_0001s12190	POPTR_0001s12190 (10)	scaffold_1:9437333-9437711(-) (10)	NA	O49436	Pentatricopeptide repeat-containing protein At4g20090	AT4G20090.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g30420.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g090110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3474.1.S1_at	A	A1MS	POPTR_0005s00220	POPTR_0005s00220 (9)	scaffold_5:17280-17801(+) (9)	NA	Q8BG09	Transmembrane protein 184B	AT3G05940.1	Protein of unknown function (DUF300) 	LOC_Os03g61210.1	"domain of unknown function domain containing protein, expressed"	Medtr7g134570.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3477.2.S1_at	A	A1TS	POPTR_0010s24240	POPTR_0010s24240 (11)	scaffold_10:20544774-20545093(-) (11)	NA	NA	NA	AT5G04670.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os02g01020.1	expressed protein	Medtr1g117100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3477.3.A1_s_at	A	A1TS	POPTR_0010s26070	POPTR_0010s26070 (11)	scaffold_10:21435786-21436409(-) (11)	NA	Q9FWR2	Pyrophosphate-energized membrane proton pump 3	AT1G16780.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g33490.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.34797.1.S1_at	A	A1MS	POPTR_0006s15100	POPTR_0006s15100 (9)	scaffold_6:12557918-12558460(+) (9)	NA	Q9ZUP2	"DNA repair protein recA homolog 3, mitochondrial"	AT2G19490.1	recA DNA recombination family protein 	LOC_Os01g67510.1	"recA protein, putative, expressed"	Medtr2g046210.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34798.1.S1_at	A	A1TS	POPTR_0006s04820	POPTR_0006s04820 (11)	scaffold_6:3352220-3352488(-) (11)	NA	Q8GWK2	AP2-like ethylene-responsive transcription factor At2g41710	AT2G41710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g32270.1	"AP2 domain containing protein, expressed"	Medtr8g144720.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.34799.1.S1_at	A	A1TS	POPTR_0009s12440	POPTR_0009s12440 (11)	scaffold_9:10152174-10153317(-) (11)	NA	P29458	DNA replication licensing factor mcm4	AT2G16440.1	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os01g36390.1	"MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed"	Medtr4g096540.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0016887|ATPase activity	NA
PtpAffx.34802.1.S1_s_at	A	A1TS	POPTR_0018s12420	POPTR_0018s12420 (11)	scaffold_18:12909578-12909754(+) (11)	NA	Q96FX7	tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A	AT5G14600.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g25360.1	"tRNA methyltransferase complex GCD14 subunit, putative, expressed"	Medtr2g018150.1	tRNA methyltransferase complex GCD14 subunit 	GO:0044281|small molecule metabolic process||GO:0030488|tRNA methylation||GO:0044260|cellular macromolecule metabolic process	GO:0016429|tRNA (adenine-N1-)-methyltransferase activity	NA
PtpAffx.34805.1.S1_at	A	A1TS	POPTR_0001s08550	POPTR_0001s08550 (10)	scaffold_1:6513288-6513608(+) (10)	NA	Q9FPQ8	Homeobox protein knotted-1-like 7	AT1G62990.1	KNOTTED-like homeobox of Arabidopsis thaliana 7 	LOC_Os03g03164.2	"homeobox protein knotted-1, putative, expressed"	Medtr5g011210.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.34822.1.S1_at	A	A1TS	POPTR_0009s08140	POPTR_0009s08140 (11)	scaffold_9:7491088-7491600(+) (11)	NA	NA	NA	AT1G07020.1	unknown protein; Has 39 Blast hits to 39 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 3; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	Medtr3g033960.1	"Strong similarity to a mitochondrial carrier protein from Ribes nigrum gb|AJ007580. It contains a mitochondrial carrier protein domain PF|00153. ESTs gb|T46775, gb|R90539, gb|AW029646 and gb|AA605443 come from this gene., putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3484.1.S1_s_at	A	A1TS	POPTR_0001s03100	POPTR_0001s03100 (9)	scaffold_1:2435473-2436775(+) (11)	NA	Q84Y18	CAX-interacting protein 4	AT2G28910.1	CAX interacting protein 4 	LOC_Os09g01640.1	"CAX-interacting protein 4, putative, expressed"	Medtr1g064960.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.34850.1.A1_at	A	A1TS	POPTR_0001s30580	POPTR_0001s30580 (11)	scaffold_1:29074440-29075704(+) (11)	NA	Q54MI6	TIP41-like protein	AT4G34270.1	TIP41-like family protein 	LOC_Os03g55270.1	"TIP41, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34852.1.A1_at	A	A1TS	POPTR_0018s12960	POPTR_0018s12960 (11)	scaffold_18:13420430-13421762(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G26600.1	Glycosyl hydrolase superfamily protein 	LOC_Os06g40490.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr8g120870.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.34853.2.A1_at	A	A1TS	POPTR_0015s05870	POPTR_0015s05870 (11)	scaffold_15:6195643-6195997(-) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os01g41750.1	expressed protein	Medtr5g093230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.3486.1.S1_at	A	A1MS	POPTR_0002s04400	POPTR_0002s04400 (11)	scaffold_2:2757198-2757523(+) (11)	NA	NA	NA	AT2G30630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g43300.1	expressed protein	Medtr1g089770.1	"H1flk, putative "	GO:0001906|cell killing	GO:0005524|ATP binding	NA
PtpAffx.34866.1.A1_s_at	A	A1TS	POPTR_0018s12590	POPTR_0018s12590 (11)	scaffold_18:13139563-13139899(+) (11)	NA	NA	NA	AT2G10950.1	BSD domain-containing protein 	LOC_Os05g43520.2	"BSD, putative, expressed"	Medtr8g121460.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34866.2.A1_at	A	A1TS	POPTR_0006s06400	POPTR_0006s06400 (11)	scaffold_6:4568156-4568616(+) (11)	NA	NA	NA	AT2G10950.1	BSD domain-containing protein 	LOC_Os05g43520.2	"BSD, putative, expressed"	Medtr8g121460.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3487.1.S1_at	A	A1TS	POPTR_0013s00240	POPTR_0013s00240 (11)	scaffold_13:30951-31381(-) (11)	NA	Q6I544	Germin-like protein 5-1	AT1G09560.1	germin-like protein 5 	LOC_Os05g19670.1	"Cupin domain containing protein, expressed"	Medtr1g103240.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.34886.1.S1_at	A	A1TS	POPTR_0016s06940	POPTR_0016s06940 (11)	scaffold_16:4740549-4741082(+) (11)	NA	Q9H2U1	Probable ATP-dependent RNA helicase DHX36	AT2G35920.1	RNA helicase family protein 	LOC_Os10g33275.1	"DEAD/DEAH box helicase domain containing protein, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.34892.1.S1_at	A	A1TS	POPTR_0016s13370	POPTR_0016s13370 (9)	scaffold_16:12575203-12575574(+) (9)	NA	NA	NA	AT2G38330.1	MATE efflux family protein 	LOC_Os12g01580.1	"MATE efflux protein, putative, expressed"	Medtr5g106650.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.34905.2.A1_a_at	A	A1TS	POPTR_0015s04100	POPTR_0015s04100 (11)	scaffold_15:4100187-4101336(-) (11)	NA	Q54J73	Poly(A) polymerase	AT1G17980.1	poly(A) polymerase 1 	LOC_Os06g21470.1	expressed protein	Medtr6g086370.1	"DNA polymerase, beta-like region; Poly(A) polymerase, central region; Poly(A) polymerase, C-terminal-like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.34909.1.S1_at	A	A1TS	POPTR_0008s20690	POPTR_0008s20690 (11)	scaffold_8:14602205-14603700(+) (11)	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT5G19070.1	SNARE associated Golgi protein family 	LOC_Os07g46220.1	"SNARE associated Golgi protein, putative, expressed"	Medtr4g033450.1	"UPF0043 membrane protein slr0305, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34911.1.A1_a_at	A	A2TS	POPTR_0002s12920	POPTR_0002s12920 (11)//POPTR_0014s03160 (11)	scaffold_14:2553151-2553534(+) (11)//scaffold_2:9602566-9602951(+) (11)	NA	NA	NA	AT4G33380.1	unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os06g11070.1	expressed protein	Medtr1g024810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34911.1.A1_at	A	A1TS	POPTR_0014s03160	POPTR_0014s03160 (11)	scaffold_14:2552958-2553557(+) (11)	NA	NA	NA	AT4G33380.1	unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os06g11070.1	expressed protein	Medtr1g024810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34911.2.A1_at	A	A1TS	POPTR_0002s12920	POPTR_0002s12920 (10)	scaffold_2:9602622-9602962(+) (10)	NA	NA	NA	AT4G33380.1	unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os06g11070.1	expressed protein	Medtr1g024810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34917.2.S1_a_at	A	A1TS	POPTR_0001s06070	POPTR_0001s06070 (11)	scaffold_1:4727360-4727824(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os01g58640.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr4g045140.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.34922.1.S1_s_at	A	A1TS	POPTR_0014s17080	POPTR_0014s17080 (11)	scaffold_14:13253801-13254230(+) (11)	NA	Q15034	Probable E3 ubiquitin-protein ligase HERC3	AT5G48330.2	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os02g10380.1	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr5g020520.1	"Probable E3 ubiquitin-protein ligase HERC2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34924.1.S1_at	A	A1TS	POPTR_0006s25210	POPTR_0006s25210 (10)	scaffold_6:23625473-23626033(-) (10)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os02g12910.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr3g128260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.3493.1.S1_at	A	A1TS	POPTR_0010s07270	POPTR_0010s07270 (11)	scaffold_10:8376844-8377015(+) (11)	NA	P46015	Uncharacterized protein all1601	AT1G04620.1	"coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family "	LOC_Os04g25400.2	"uncharacterized protein all1601, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34940.1.S1_at	A	A1TS	POPTR_0012s14340	POPTR_0012s14340 (9)	scaffold_12:14276098-14276347(+) (9)	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34940.2.A1_a_at	A	A1TS	POPTR_0012s14340	POPTR_0012s14340 (11)	scaffold_12:14275530-14276072(+) (11)	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34970.1.S1_a_at	A	A3TS	POPTR_0017s11240	POPTR_0017s11250 (11)//POPTR_0017s11240 (11)//POPTR_0017s11270 (9)	scaffold_17:10955836-10956313(+) (11)//scaffold_17:10969928-10970393(+) (11)//scaffold_17:11005433-11005898(+) (10)	NA	Q9C952	Cleavage and polyadenylation specificity factor subunit 3-I	AT1G61010.3	cleavage and polyadenylation specificity factor 73-I 	LOC_Os03g63590.1	"metallo-beta-lactamase, putative, expressed"	Medtr2g006480.1	Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3498.1.S1_at	A	A1TS	POPTR_0002s04540	POPTR_0002s04540 (11)	scaffold_2:2834251-2836652(+) (11)	NA	Q9Y535	DNA-directed RNA polymerase III subunit RPC8	AT1G06790.2	RNA polymerase Rpb7 N-terminal domain-containing protein 	LOC_Os07g29420.2	"DNA-directed RNA polymerase III subunit RPC8, putative, expressed"	Medtr8g087180.2	"RNA polymerase Rpb7, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.34991.1.A1_at	A	A1TS	POPTR_0016s00660	POPTR_0016s00660 (10)	scaffold_16:228772-229232(+) (10)	NA	Q0DCT8	Protein kinase G11A	AT5G47750.1	D6 protein kinase like 2 	LOC_Os08g38320.3	"AGC_PVPK_like_kin82y.14 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35016.1.A1_s_at	A	A3TS	POPTR_0001s05330	POPTR_0328s00200 (11)//POPTR_0017s07350 (11)//POPTR_0001s05330 (11)	scaffold_1:4105775-4105992(-) (11)//scaffold_17:5703943-5704160(-) (11)//scaffold_328:11122-11339(+) (11)	NA	Q8GSM2	"Lipoxygenase 2.3, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.35020.1.S1_a_at	A	A1TS	POPTR_0005s02180	POPTR_0005s02180 (11)	scaffold_5:1442662-1443411(+) (11)	NA	Q0WRB2	Probable protein phosphatase 2C 73	AT5G27930.2	Protein phosphatase 2C family protein 	LOC_Os05g29030.2	"protein phosphatase 2C, putative, expressed"	Medtr7g138290.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35031.1.S1_at	A	A1TS	POPTR_0003s20890	POPTR_0003s20890 (11)	scaffold_3:19272057-19272549(+) (11)	NA	NA	NA	AT1G55480.1	"protein containing PDZ domain, a K-box domain, and a TPR region "	LOC_Os07g07540.1	"SHOOT1 protein, putative, expressed"	Medtr4g136950.1	PDZ/DHR/GLGF; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3505.1.A1_at	A	A1TS	POPTR_0010s23870	POPTR_0010s23870 (11)	scaffold_10:20324999-20325933(-) (11)	NA	Q8GYE0	SEC12-like protein 1	AT3G52190.1	phosphate transporter traffic facilitator1 	LOC_Os07g09000.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3505.2.S1_a_at	A	A1TS	POPTR_0008s02920	POPTR_0008s02920 (11)	scaffold_8:1505394-1506153(+) (11)	NA	Q8GYE0	SEC12-like protein 1	AT3G52190.1	phosphate transporter traffic facilitator1 	LOC_Os07g09000.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35059.1.S1_at	A	A1MS	POPTR_0014s15560	POPTR_0014s15560 (11)	scaffold_14:11587006-11587062(-) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G15410.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35059.1.S1_s_at	A	A1MS	POPTR_0014s15560	POPTR_0014s15560 (9)	scaffold_14:11586936-11587020(-) (9)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G15410.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35076.1.A1_s_at	A	A1TS	POPTR_0001s00940	POPTR_0001s00940 (11)	scaffold_1:767104-767513(+) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT1G31650.1	RHO guanyl-nucleotide exchange factor 14 	LOC_Os02g47420.3	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr5g026080.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.35077.1.A1_at	A	A1TS	POPTR_0012s06650	POPTR_0012s06650 (10)	scaffold_12:6980783-6982195(+) (10)	NA	Q9LEZ3	Transcription factor BIM1	AT5G08130.4	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.3508.1.S1_a_at	A	A2TS	POPTR_0002s18340	POPTR_0002s18340 (11)//POPTR_0014s10400 (11)	scaffold_14:7784770-7785294(-) (11)//scaffold_2:14303590-14304200(-) (11)	NA	Q8AVP1	Ribosome production factor 1	AT4G01560.1	Ribosomal RNA processing Brix domain protein 	LOC_Os06g04600.2	"Brix domain containing protein, putative, expressed"	AC233657_19.1	Brix AC233657.1 109798-104495 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3508.1.S1_at	A	A1TS	POPTR_0002s18340	POPTR_0002s18340 (11)	scaffold_2:14303514-14304454(-) (11)	NA	Q8AVP1	Ribosome production factor 1	AT4G01560.1	Ribosomal RNA processing Brix domain protein 	LOC_Os06g04600.2	"Brix domain containing protein, putative, expressed"	AC233657_19.1	Brix AC233657.1 109798-104495 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3508.3.S1_a_at	A	A1TS	POPTR_0014s10400	POPTR_0014s10400 (11)	scaffold_14:7784643-7785880(-) (11)	NA	Q5R631	Ribosome production factor 1	AT4G01560.1	Ribosomal RNA processing Brix domain protein 	LOC_Os06g04600.2	"Brix domain containing protein, putative, expressed"	AC233657_19.1	Brix AC233657.1 109798-104495 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3509.1.S1_s_at	A	A1TS	POPTR_0013s02320	POPTR_0013s02320 (11)	scaffold_13:1389768-1390616(+) (11)	NA	O60673	DNA polymerase zeta catalytic subunit	AT1G67500.2	recovery protein 3 	LOC_Os11g08330.1	"POLD1 - Putative DNA polymerase delta catalytic subunit, expressed"	Medtr7g139140.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.35119.1.S1_at	A	A1TS	POPTR_0009s16670	POPTR_0009s16670 (11)	scaffold_9:12614603-12615644(-) (11)	NA	Q9XH43	CEN-like protein 2	AT2G27550.1	centroradialis 	LOC_Os12g05590.1	"RCN3  Centroradialis-like1 homogous to TFL1  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	Medtr2g108000.1	PEBP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3512.1.S1_at	A	A1TS	POPTR_0008s11180	POPTR_0008s11180 (11)	scaffold_8:7067248-7067617(+) (11)	NA	Q5ZJ01	Abhydrolase domain-containing protein FAM108B1	AT3G30380.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g42730.1	"OsPOP14 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35127.1.A1_at	A	A3TS	POPTR_0010s05050	POPTR_2455s00200 (10)//POPTR_0010s05050 (10)//POPTR_0036s00200 (10)	scaffold_10:6420730-6420867(+) (10)//scaffold_2455:1163-1300(-) (10)//scaffold_36:79657-79794(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35127.1.A1_x_at	A	A4TS	POPTR_0010s05050	POPTR_2455s00200 (11)//POPTR_0010s05050 (11)//POPTR_0036s00200 (11)//POPTR_0010s01270 (9)	scaffold_10:1088437-1088868(-) (9)//scaffold_10:1220099-1220506(-) (9)//scaffold_10:6420687-6421094(+) (11)//scaffold_10:6433736-6436172(+) (9)//scaffold_2455:936-1343(-) (11)//scaffold_36:79614-80021(+) (11)//scaffold_36:178664-179071(+) (9)	POPTR_0036s00250 (8)//POPTR_0010s01230 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35127.2.A1_s_at	A	A9TS	POPTR_0010s01230	POPTR_0036s00250 (11)//POPTR_0010s01345 (11)//POPTR_2455s00200 (11)//POPTR_0010s01270 (11)//POPTR_0010s01230 (11)//POPTR_0010s05050 (11)//POPTR_0036s00220 (11)//POPTR_0010s01300 (11)//POPTR_0036s00200 (11)	scaffold_10:1088483-1088517(-) (11)//scaffold_10:1220145-1220179(-) (11)//scaffold_10:1225652-1225686(-) (11)//scaffold_10:1267654-1267688(-) (11)//scaffold_10:1366577-1366611(-) (11)//scaffold_10:1404549-1404583(-) (11)//scaffold_10:1409059-1409093(-) (11)//scaffold_10:1415766-1415800(-) (11)//scaffold_10:6421014-6421048(+) (11)//scaffold_10:6436092-6436126(+) (11)//scaffold_2455:982-1016(-) (11)//scaffold_36:3361-3395(+) (11)//scaffold_36:79941-79975(+) (11)//scaffold_36:121770-121804(+) (11)//scaffold_36:159045-159079(+) (11)//scaffold_36:160054-160088(+) (11)//scaffold_36:178991-179025(+) (11)//scaffold_696:10380-10414(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35127.4.A1_at	A	A1TS	POPTR_0036s00230	POPTR_0036s00230 (11)	scaffold_10:1031332-1031829(-) (9)//scaffold_36:124016-124550(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35134.1.S1_at	A	A1TS	POPTR_0013s01040	POPTR_0013s01040 (9)	scaffold_13:577564-577950(+) (9)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os09g04160.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35138.1.S1_at	A	A1MS	POPTR_0012s04190	POPTR_0012s04190 (9)	scaffold_12:3414215-3414679(-) (9)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT3G17850.1	Protein kinase superfamily protein 	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35144.1.A1_s_at	A	A1TS	POPTR_0008s14990	POPTR_0008s14990 (11)	scaffold_8:9992130-9992250(+) (11)	NA	Q8GYM6	Cyclin-T1-4	AT4G19600.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr1g132790.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35159.1.S1_at	A	A1TS	POPTR_0014s17430	POPTR_0014s17430 (10)	scaffold_14:13573914-13574329(+) (10)	NA	Q6GN58	Protein YIF1B-A	AT3G59500.1	Integral membrane HRF1 family protein 	LOC_Os04g08320.1	"YIF1B, putative, expressed"	Medtr7g020670.1	Hrf1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35163.1.S1_at	A	A1TS	POPTR_0002s25340	POPTR_0002s25340 (10)	scaffold_2:22438688-22439315(-) (10)	NA	Q8LFD5	Uncharacterized protein At4g13230	AT4G13230.1	Late embryogenesis abundant protein (LEA) family protein 	NA	NA	Medtr7g089250.1	"Late embryogenesis abundant protein, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3518.1.S1_at	A	A1TS	POPTR_0015s06920	POPTR_0015s06920 (11)	scaffold_15:7951144-7951471(-) (11)	NA	Q9SIK7	Presenilin-like protein At2g29900	AT2G29900.1	Presenilin-2 	LOC_Os01g16930.1	"presenilin, putative, expressed"	Medtr7g104070.1	"Peptidase A22A, presenilin "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	GO:0016021|integral to membrane
PtpAffx.35182.1.S1_at	A	A1MS	POPTR_0012s04570	POPTR_0012s04570 (10)	scaffold_12:3859252-3859677(-) (10)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G73660.1	protein tyrosine kinase family protein 	LOC_Os06g12590.1	"protein kinase, putative, expressed"	Medtr4g155190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35183.1.A1_at	A	A1TS	POPTR_0025s00570	POPTR_0025s00570 (11)	scaffold_25:273467-273950(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g121980.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35186.1.S1_at	A	A1TS	POPTR_0005s10610	POPTR_0005s10610 (10)	scaffold_5:7640243-7641759(-) (10)	NA	Q9FIW5	Putative NAC domain-containing protein 94	AT2G17040.1	NAC domain containing protein 36 	LOC_Os03g04070.1	"no apical meristem protein, putative, expressed"	Medtr4g103530.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.35188.1.S1_s_at	A	A2TS	POPTR_0017s00880	POPTR_0017s00880 (11)//POPTR_0017s00890 (10)	scaffold_17:657748-658286(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g50640.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.35194.1.S1_at	A	A1TS	POPTR_0003s20160	POPTR_0003s20160 (11)	scaffold_3:18730381-18731292(-) (11)	NA	Q9FPS3	Ubiquitin carboxyl-terminal hydrolase 24	AT4G30890.3	ubiquitin-specific protease 24 	LOC_Os07g46660.2	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr2g071010.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.3521.1.A1_at	A	A1TS	POPTR_0002s23830	POPTR_0002s23830 (11)	scaffold_2:21305091-21305577(+) (11)	NA	NA	NA	AT5G13890.3	Family of unknown function (DUF716)  	LOC_Os11g32950.1	conserved hypothetical protein	Medtr7g099410.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35223.1.S1_s_at	A	A1TS	POPTR_0016s03470	POPTR_0016s03470 (11)	scaffold_16:1850122-1851958(+) (11)	POPTR_0006s03890 (7)	Q10KY3	Calcium/calmodulin-dependent serine/threonine-protein kinase 1	AT2G41140.1	CDPK-related kinase 1 	LOC_Os07g44710.1	"CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr7g106490.1	Protein kinase; EF-Hand type 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35226.1.S1_at	A	A1MS	POPTR_0006s08030	POPTR_0006s08030 (11)	scaffold_6:5858668-5859147(-) (11)	NA	Q93Z08	"Glucan endo-1,3-beta-glucosidase 6"	AT5G58090.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g04670.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.35235.1.S1_at	A	A1TS	POPTR_0004s23610	POPTR_0004s23610 (11)	scaffold_4:22263522-22264657(-) (11)	NA	NA	NA	AT4G21192.2	Cytochrome c oxidase biogenesis protein Cmc1-like 	LOC_Os02g35315.2	expressed protein	Medtr3g086450.1	Protein of unknown function UPF0287 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35239.2.S1_a_at	A	A1TS	POPTR_0002s25610	POPTR_0002s25610 (11)	scaffold_2:22701560-22702083(-) (11)	NA	NA	NA	AT3G04300.1	RmlC-like cupins superfamily protein 	LOC_Os02g40700.1	"enzyme of the cupin superfamily protein, putative, expressed"	Medtr7g117610.1	"Cupin, RmlC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35240.1.S1_at	A	A1TS	POPTR_0017s12620	POPTR_0017s12620 (9)	scaffold_17:12823942-12824209(+) (9)	NA	Q84J46	Pentatricopeptide repeat-containing protein At3g29290	AT3G29290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g11310.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015660.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3525.2.S1_a_at	A	A1TS	POPTR_0003s04510	POPTR_0003s04510 (11)	scaffold_3:5226146-5227257(+) (11)	NA	NA	NA	AT1G55080.1	MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). 	LOC_Os01g31629.3	expressed protein	Medtr8g018800.1	"Mediator of RNA polymerase II transcription subunit 15, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3528.1.S1_at	A	A1TS	POPTR_0005s23500	POPTR_0005s23500 (11)	scaffold_5:22229826-22230023(-) (11)	NA	Q42777	"Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial"	AT1G03090.2	"methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) "	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr1g083990.1	Pyruvate carboxylase; 	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.3528.2.S1_a_at	A	A1TS	POPTR_0005s23500	POPTR_0005s23500 (11)	scaffold_5:22229939-22231092(-) (11)	NA	Q42777	"Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial"	AT1G03090.2	"methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) "	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr1g083990.1	Pyruvate carboxylase; 	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.35286.1.S1_at	A	A1TS	POPTR_0004s16750	POPTR_0004s16750 (11)	scaffold_4:17117244-17117480(-) (11)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT4G39080.1	vacuolar proton ATPase A3 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.35305.1.S1_at	A	A1MS	POPTR_0005s20300	POPTR_0005s20300 (11)	scaffold_5:19346690-19346951(+) (11)	NA	Q9XI07	SWI/SNF complex subunit SWI3C	AT1G21700.1	SWITCH/sucrose nonfermenting 3C 	LOC_Os11g08080.1	"SWIRM domain containing protein, expressed"	Medtr3g100590.1	SWIRM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35315.1.S1_at	A	A1TS	POPTR_0004s08410	POPTR_0004s08410 (11)	scaffold_4:6960573-6960981(+) (11)//scaffold_4:11074662-11074986(-) (9)	POPTR_0004s12160 (8)	Q96D46	60S ribosomal export protein NMD3	AT2G03820.1	nonsense-mediated mRNA decay NMD3 family protein 	LOC_Os10g42320.1	"nonsense-mediated mRNA decay protein 3, putative, expressed"	Medtr3g087050.1	NMD3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35332.1.S1_s_at	A	A1TS	POPTR_0015s09140	POPTR_0015s09140 (11)	scaffold_15:10446653-10448034(+) (11)	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT4G19180.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os10g21000.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g025310.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.35350.1.S1_at	A	A1TS	POPTR_0014s16420	POPTR_0014s16420 (11)	scaffold_14:12502324-12502834(-) (11)	NA	Q15024	Exosome complex exonuclease RRP42	AT3G07750.2	3'-5'-exoribonuclease family protein 	LOC_Os12g21500.1	"exosome complex exonuclease, putative, expressed"	Medtr8g093050.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.35351.1.S1_x_at	A	A1TS	POPTR_0009s11760	POPTR_0009s11760 (11)	scaffold_9:9699421-9700094(+) (11)	POPTR_0009s11770 (6)	P17772	Organ-specific protein S2	NA	NA	NA	NA	Medtr3g041160.1	"specific tissue protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35351.2.S1_a_at	A	A2TS	POPTR_0009s11760	POPTR_0009s11760 (11)//POPTR_0009s11770 (10)	scaffold_9:9699030-9699388(+) (11)//scaffold_9:9699511-9702972(+) (9)	NA	P17772	Organ-specific protein S2	NA	NA	NA	NA	Medtr3g041160.1	"specific tissue protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35362.1.A1_at	A	A1MS	POPTR_0008s12620	POPTR_0008s12620 (9)	scaffold_8:8171528-8172104(+) (9)	NA	Q9ZU40	Sulfhydryl oxidase 2	AT2G01270.1	quiescin-sulfhydryl oxidase 2 	LOC_Os05g47930.3	"OsQSOXL1  quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed"	Medtr1g137690.1	Erv1/Alr; Thioredoxin fold 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016972|thiol oxidase activity	NA
PtpAffx.35362.2.A1_s_at	A	A1TS	POPTR_0008s12620	POPTR_0008s12620 (11)	scaffold_8:8171939-8171978(+) (11)	NA	Q9ZU40	Sulfhydryl oxidase 2	AT2G01270.1	quiescin-sulfhydryl oxidase 2 	LOC_Os05g47930.3	"OsQSOXL1  quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed"	Medtr1g137690.1	Erv1/Alr; Thioredoxin fold 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016972|thiol oxidase activity	NA
PtpAffx.35380.1.S1_a_at	A	A1TS	POPTR_0012s02620	POPTR_0012s02620 (11)	scaffold_12:2139704-2140074(-) (11)	NA	Q2V3E2	Protein yippee-like At4g27740	AT4G27740.1	Yippee family putative zinc-binding protein 	LOC_Os12g29960.1	"yippee zinc-binding protein, putative"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3539.1.S1_a_at	A	A1TS	POPTR_0001s44080	POPTR_0001s44080 (11)	scaffold_1:44532807-44533108(-) (11)	NA	O49853	(+)-delta-cadinene synthase isozyme C2	AT5G23960.1	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.3539.3.S1_a_at	A	A1TS	POPTR_0001s44080	POPTR_0001s44080 (11)	scaffold_1:44533239-44533438(-) (11)	NA	O49853	(+)-delta-cadinene synthase isozyme C2	AT5G23960.1	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.35392.1.A1_at	A	A1TS	POPTR_0011s05240	POPTR_0011s05240 (10)	scaffold_11:5111758-5112297(-) (10)	NA	Q8VY10	Probable ubiquitin-conjugating enzyme E2 24	AT2G33770.1	phosphate 2 	LOC_Os05g48390.1	"ubiquitin conjugating enzyme protein, putative, expressed"	Medtr2g017250.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.35404.1.S1_at	A	A1TS	POPTR_0001s21890	POPTR_0001s21890 (10)	scaffold_1:20380166-20380600(-) (10)	NA	Q9C992	3-ketoacyl-CoA synthase 7	AT1G71160.1	3-ketoacyl-CoA synthase 7 	LOC_Os03g12030.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr2g007100.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.35408.1.S1_at	A	A2TS	POPTR_0007s00820	POPTR_0007s00820 (11)//POPTR_0007s00780 (9)	scaffold_7:403558-403939(+) (10)//scaffold_7:417681-418062(+) (11)//scaffold_7:1781020-1781377(+) (9)	POPTR_0007s03090 (8)//POPTR_0004s18580 (7)	Q9FID6	Probable receptor-like protein kinase At5g39020	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02790.1	"protein kinase domain containing protein, expressed"	Medtr1g034490.1	"TAK14, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35409.1.A1_at	A	A1MS	POPTR_0002s06960	POPTR_0002s06960 (11)	scaffold_2:4705254-4705636(-) (11)	NA	P46276	"Fructose-1,6-bisphosphatase, cytosolic"	AT1G43670.1	Inositol monophosphatase family protein 	LOC_Os01g64660.2	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.3541.1.S1_at	A	A1TS	POPTR_0014s02770	POPTR_0014s02770 (11)	scaffold_14:2310345-2310607(+) (11)	NA	NA	NA	AT5G42930.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr5g017200.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.35411.1.S1_s_at	A	A1TS	POPTR_0993s00200	POPTR_0993s00200 (11)	scaffold_9:7040657-7041057(+) (11)//scaffold_993:3558-3957(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35413.1.S1_at	A	A1TS	POPTR_0004s15170	POPTR_0004s15170 (11)	scaffold_4:15813065-15814544(-) (11)	NA	Q9C566	Peptidyl-prolyl cis-trans isomerase CYP40	AT2G15790.1	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase 	LOC_Os06g11320.2	"peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed"	Medtr4g129080.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.35432.2.A1_a_at	A	A1TS	POPTR_0002s15710	POPTR_0002s15710 (11)	scaffold_2:11730452-11732490(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g42730.1	expressed protein	Medtr7g084310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35432.3.A1_a_at	A	A1TS	POPTR_0002s15710	POPTR_0002s15710 (11)	scaffold_2:11732304-11732422(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g42730.1	expressed protein	Medtr7g084310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35433.1.S1_at	A	A1TS	POPTR_0001s43090	POPTR_0001s43090 (11)	scaffold_1:43174540-43175061(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35439.1.S1_s_at	A	A2TS	POPTR_0019s10390	POPTR_0019s10390 (11)//POPTR_0019s10400 (11)	scaffold_19:11945155-11946889(-) (11)//scaffold_19:11954474-11955692(-) (11)	NA	Q9LXN3	Probable fatty acyl-CoA reductase 4	AT3G44540.1	fatty acid reductase 4 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35443.1.S1_at	A	A1TS	POPTR_0004s21450	POPTR_0004s21450 (11)	scaffold_4:20574196-20574364(-) (11)	NA	Q9SL48	SEC1 family transport protein SLY1	AT2G17980.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os03g42320.1	"Sec1 family transport protein, putative, expressed"	AC233560_16.1	Sec1-like protein AC233560.2 38842-41210 E EGN_Mt090430 200	GO:0006904|vesicle docking during exocytosis	NA	NA
PtpAffx.35447.1.S1_at	A	A1TS	POPTR_0003s05020	POPTR_0003s05020 (10)	scaffold_3:6206256-6208416(+) (10)	NA	P75897	Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB	AT3G16190.1	Isochorismatase family protein 	LOC_Os02g17640.1	"isochorismatase family protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.35451.1.S1_at	A	A1TS	POPTR_0006s10730	POPTR_0006s10730 (11)	scaffold_6:8086941-8087192(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35456.1.A1_at	A	A1MS	POPTR_0002s24440	POPTR_0002s24440 (10)	scaffold_2:21815018-21816848(+) (11)	NA	NA	NA	AT4G13630.2	"Protein of unknown function, DUF593 "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3546.1.A1_at	A	A1TS	POPTR_0018s03150	POPTR_0018s03150 (11)	scaffold_18:2800298-2801499(+) (11)	NA	Q9FVR6	"Uncharacterized protein At1g32220, chloroplastic"	AT5G10730.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g35039.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138720.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.35461.1.S1_at	A	A1TS	POPTR_0006s26970	POPTR_0006s26970 (9)	scaffold_6:24993335-24993673(-) (9)	NA	O48781	SPX domain-containing protein 2	AT2G26660.1	SPX domain gene 2 	LOC_Os06g40120.1	"SPX domain containing protein, putative, expressed"	Medtr1g013760.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35467.1.S1_a_at	A	A1TS	POPTR_0004s15150	POPTR_0004s15150 (10)	scaffold_4:15806892-15807654(+) (10)	POPTR_0009s10930 (6)	Q6NXE6	Armadillo repeat-containing protein 6	AT4G33945.1	ARM repeat superfamily protein 	LOC_Os02g52370.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35467.3.A1_a_at	A	A1TS	POPTR_0004s15150	POPTR_0004s15150 (11)	scaffold_4:15808601-15808667(+) (11)	NA	Q6NXE6	Armadillo repeat-containing protein 6	AT4G33945.1	ARM repeat superfamily protein 	LOC_Os02g52370.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35467.4.A1_at	A	A1TS	POPTR_0004s15150	POPTR_0004s15150 (11)	scaffold_4:15808737-15809004(+) (11)	NA	Q6NXE6	Armadillo repeat-containing protein 6	AT4G33945.1	ARM repeat superfamily protein 	LOC_Os02g52370.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3547.1.S1_at	A	A1TA	POPTR_0005s09310	POPTR_0005s09310 (10)	scaffold_5:6507150-6507710(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35471.1.S1_at	A	A1TS	POPTR_0018s13290	POPTR_0018s13290 (10)	scaffold_18:13672042-13672241(+) (10)	NA	NA	NA	AT5G20590.1	TRICHOME BIREFRINGENCE-LIKE 5 	LOC_Os06g44900.1	"leaf senescence related protein, putative, expressed"	Medtr8g130160.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35473.1.S1_a_at	A	A1TS	POPTR_0008s16740	POPTR_0008s16740 (11)	scaffold_8:11250027-11250428(+) (11)	NA	Q4FE47	Putative E3 ubiquitin-protein ligase XBAT35	AT3G23280.2	XB3 ortholog 5 in Arabidopsis thaliana 	LOC_Os07g26490.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g090650.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35473.3.S1_a_at	A	A1TS	POPTR_0008s16740	POPTR_0008s16740 (11)	scaffold_8:11250472-11251037(+) (11)	NA	Q4FE47	Putative E3 ubiquitin-protein ligase XBAT35	AT3G23280.2	XB3 ortholog 5 in Arabidopsis thaliana 	LOC_Os07g26490.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g090650.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35479.1.S1_at	A	A1MS	POPTR_0010s18740	POPTR_0010s18740 (9)	scaffold_10:16889861-16890354(-) (9)	NA	NA	NA	AT2G31600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g23840.1	expressed protein	Medtr7g099740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35480.1.S1_at	A	A1TS	POPTR_0015s04410	POPTR_0015s04410 (11)	scaffold_15:4572399-4573186(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G73660.1	protein tyrosine kinase family protein 	LOC_Os06g12590.1	"protein kinase, putative, expressed"	Medtr4g155190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35484.1.S1_at	A	A1TS	POPTR_0004s05970	POPTR_0004s05970 (10)	scaffold_4:4703213-4703401(+) (10)	NA	NA	NA	AT1G29290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g135670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3549.1.A1_at	A	A1TS	POPTR_0001s34970	POPTR_0001s34970 (11)	scaffold_1:33237292-33239330(-) (11)	NA	NA	NA	AT3G27930.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 35 Blast hits to 35 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g50200.2	expressed protein	Medtr6g006570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35496.1.A1_at	A	A2TS	POPTR_0005s03740	POPTR_0005s03740 (11)//POPTR_0014s17870 (9)	scaffold_14:14406098-14406498(-) (10)//scaffold_5:2492821-2493221(-) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.35515.1.S1_at	A	A1TS	POPTR_0008s10280	POPTR_0008s10280 (9)	scaffold_8:6436441-6436920(-) (9)	NA	O22900	Probable WRKY transcription factor 23	AT2G47260.1	WRKY DNA-binding protein 23 	LOC_Os03g55080.1	"OsWRKY3 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g106500.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.35532.1.S1_at	A	A1TS	POPTR_0009s14300	POPTR_0009s14300 (9)	scaffold_9:11230229-11230671(-) (9)	NA	NA	NA	AT1G29500.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37500.1	"OsSAUR55 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g090130.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35533.1.S1_at	A	A1MS	POPTR_0002s15530	POPTR_0002s15530 (9)	scaffold_2:11608098-11608646(+) (10)	NA	Q7GCL7	NAC domain-containing protein 74	AT1G33060.1	NAC 014 	LOC_Os08g06140.3	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.35538.1.S1_a_at	A	A1TS	POPTR_0008s20360	POPTR_0008s20360 (11)	scaffold_8:14143844-14143931(-) (11)	NA	A2BIJ3	BSD domain-containing protein 1	AT4G13110.1	BSD domain-containing protein 	LOC_Os01g16670.1	"BSD domain-containing protein, putative, expressed"	Medtr2g026150.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35538.2.S1_s_at	A	A1TS	POPTR_0008s20360	POPTR_0008s20360 (11)	scaffold_8:14143963-14144966(-) (11)	POPTR_0015s03110 (6)	A2BIJ3	BSD domain-containing protein 1	AT4G13110.1	BSD domain-containing protein 	LOC_Os01g16670.1	"BSD domain-containing protein, putative, expressed"	Medtr2g026150.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35544.1.S1_at	A	A1TS	POPTR_0017s06350	POPTR_0017s06350 (11)	scaffold_17:4870410-4870838(-) (11)	NA	NA	NA	AT2G43250.1	unknown protein; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g41330.1	expressed protein	Medtr4g104210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3556.1.S1_at	A	A1TS	POPTR_0001s36500	POPTR_0001s36500 (10)	scaffold_1:35130092-35130558(-) (10)	NA	D4N502	Codeine O-demethylase	AT1G17010.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os10g40880.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr5g067830.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.3557.1.S1_at	A	A1TS	POPTR_0014s03430	POPTR_0014s03430 (9)	scaffold_14:2768255-2768772(+) (9)	NA	NA	NA	AT5G42680.2	"Protein of unknown function, DUF617 "	LOC_Os09g28880.1	"DUF617 domain containing protein, expressed"	Medtr3g148270.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35572.1.S1_at	A	A1TS	POPTR_0011s07560	POPTR_0011s07560 (10)	scaffold_11:8384233-8387057(-) (10)	NA	NA	NA	AT1G29040.4	unknown protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 344 Blast hits to 344 proteins in 122 species: Archae - 2; Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). 	LOC_Os01g42770.1	expressed protein	Medtr4g128100.3	Conserved hypothetical protein 2058 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3558.1.S1_x_at	A	A6TS	POPTR_0013s03060	POPTR_0013s03490 (10)//POPTR_0013s03541 (10)//POPTR_0013s03060 (10)//POPTR_0013s03550 (10)//POPTR_0030s00520 (10)//POPTR_0030s00530 (9)	scaffold_13:1858859-1859280(-) (10)//scaffold_13:2157569-2157993(-) (10)//scaffold_13:2223742-2224170(-) (10)//scaffold_13:2240933-2241405(-) (10)//scaffold_30:247750-248174(+) (10)//scaffold_30:259621-260062(+) (9)	POPTR_0013s03520 (8)	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093150.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.3558.3.A1_a_at	A	A5TA	POPTR_0013s03060	POPTR_0013s03060 (9)//POPTR_0013s03541 (9)//POPTR_0013s03550 (9)//POPTR_0030s00520 (9)//POPTR_0013s03520 (9)	scaffold_13:1858772-1859074(+) (9)//scaffold_13:2157482-2157784(+) (9)//scaffold_13:2193972-2194304(+) (11)//scaffold_13:2223655-2223957(+) (9)//scaffold_13:2240846-2241148(+) (9)//scaffold_30:247959-248261(-) (9)	POPTR_0013s03490 (8)	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093150.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.35581.1.S1_at	A	A1MA	POPTR_0001s36530	POPTR_0001s36530 (9)	scaffold_1:35163088-35163298(+) (9)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT5G46550.1	DNA-binding bromodomain-containing protein 	LOC_Os07g32420.2	"bromodomain domain containing protein, expressed"	Medtr2g021880.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35608.1.S1_at	A	A1TS	POPTR_0012s02200	POPTR_0012s02200 (11)	scaffold_12:1841986-1842414(-) (11)	NA	Q80YA7	Dipeptidyl peptidase 8	AT5G24260.1	prolyl oligopeptidase family protein 	LOC_Os02g18850.1	"OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr3g124020.1	"Peptidase S9, prolyl oligopeptidase active site region; Peptidase S9B, dipeptidylpeptidase IV N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	GO:0016020|membrane
PtpAffx.35609.2.S1_a_at	A	A1TS	POPTR_0009s03640	POPTR_0009s03640 (11)	scaffold_9:4251943-4252547(+) (11)	NA	NA	NA	AT3G46580.1	methyl-CPG-binding domain protein 5 	NA	NA	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.35609.2.S1_at	A	A1MS	POPTR_0009s03640	POPTR_0009s03640 (10)	scaffold_9:4252332-4252566(+) (10)	NA	NA	NA	AT3G46580.1	methyl-CPG-binding domain protein 5 	NA	NA	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.3561.1.S1_at	A	A1TS	POPTR_0014s03410	POPTR_0014s03410 (11)	scaffold_14:2750310-2751180(+) (11)	NA	NA	NA	AT5G42690.1	"Protein of unknown function, DUF547 "	LOC_Os09g28850.1	expressed protein	Medtr3g148210.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35610.1.A1_at	A	A1TS	POPTR_0005s24550	POPTR_0005s24550 (11)	scaffold_5:23073062-23073537(+) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT3G23250.1	myb domain protein 15 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35610.2.S1_at	A	A1MS	POPTR_0002s03960	POPTR_0002s03960 (11)	scaffold_2:2479433-2479514(-) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT2G31180.1	myb domain protein 14 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35633.1.A1_at	A	A1TS	POPTR_0002s13070	POPTR_0002s13070 (11)	scaffold_2:9727738-9728279(+) (11)	NA	Q9SZA7	Probable disease resistance protein At4g33300	AT4G33300.2	ADR1-like 1 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr1g025080.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.35639.1.A1_at	A	A1TS	POPTR_0004s13540	POPTR_0004s13540 (11)	scaffold_4:13845011-13845523(-) (11)	NA	Q54N38	Ubiquitin carboxyl-terminal hydrolase isozyme L5	AT1G65650.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	LOC_Os02g57630.2	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr8g105130.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	GO:0005622|intracellular
PtpAffx.3564.1.S1_s_at	A	A1TS	POPTR_0001s37910	POPTR_0001s37910 (11)	scaffold_1:36946186-36946536(-) (9)//scaffold_1:36974197-36977286(-) (11)	POPTR_0001s37870 (7)	Q9FG71	UPF0172 protein At5g55940	AT5G55940.1	Uncharacterised protein family (UPF0172) 	LOC_Os04g20230.1	"neighbor of COX4, putative, expressed"	Medtr5g103870.1	Protein of unknown function UPF0172 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35650.1.A1_at	A	A1TS	POPTR_0012s04630	POPTR_0012s04630 (11)	scaffold_12:3971915-3972423(+) (11)	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT3G18050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g37156.1	expressed protein	Medtr4g155370.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3566.2.S1_a_at	A	A2TS	POPTR_0001s12570	POPTR_0001s12570 (11)//POPTR_0381s00210 (11)	scaffold_1:9744981-9747143(+) (11)//scaffold_381:5844-8400(+) (11)	NA	P43333	U2 small nuclear ribonucleoprotein A'	AT1G09760.1	U2 small nuclear ribonucleoprotein A 	LOC_Os02g13990.1	"U2 small nuclear ribonucleoprotein A, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.35670.1.A1_at	A	A1TS	POPTR_0002s21350	POPTR_0002s21350 (11)	scaffold_2:17788765-17789055(+) (11)	NA	Q54R82	Mitogen-activated protein kinase kinase kinase A	AT5G55090.1	mitogen-activated protein kinase kinase kinase 15 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g064870.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35682.1.A1_at	A	A1TS	POPTR_0004s06330	POPTR_0004s06330 (10)	scaffold_4:5037102-5037295(-) (10)	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.35695.1.A1_at	A	A1TS	POPTR_0013s01710	POPTR_0013s01710 (10)	scaffold_13:966839-967172(-) (10)	NA	NA	NA	AT3G05545.1	RING/U-box superfamily protein 	LOC_Os05g06270.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3571.1.S1_at	A	A1TS	POPTR_0018s06370	POPTR_0018s06370 (11)	scaffold_18:6198002-6198491(+) (11)	NA	O81016	ABC transporter G family member 32	AT2G26910.1	pleiotropic drug resistance 4 	LOC_Os01g42410.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr8g118760.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.35717.1.A1_at	A	A1TS	POPTR_0002s19490	POPTR_0002s19490 (11)	scaffold_2:15480306-15480847(+) (11)	NA	Q99575	Ribonucleases P/MRP protein subunit POP1	AT2G47300.2	ribonuclease Ps 	LOC_Os11g45250.1	"ribonucleases P/MRP protein subunit POP1 containing protein, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001682|tRNA 5'-leader removal	GO:0004526|ribonuclease P activity	NA
PtpAffx.35724.1.A1_at	A	A1TS	POPTR_0002s03790	POPTR_0002s03790 (11)	scaffold_2:2356200-2357471(+) (11)	NA	P04844	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	AT4G21150.3	ribophorin II (RPN2) family protein 	LOC_Os01g68324.2	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0071212|subsynaptic reticulum||GO:0008250|oligosaccharyltransferase complex
PtpAffx.35725.1.A1_at	A	A1TS	POPTR_0010s07950	POPTR_0010s07950 (10)	scaffold_10:8907119-8907616(+) (10)	NA	NA	NA	AT3G23440.1	embryo sac development arrest 6 	LOC_Os04g43310.1	expressed protein	Medtr1g090140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3573.1.S1_at	A	A1TA	POPTR_0007s12970	POPTR_0007s12970 (10)	scaffold_7:13171709-13172224(-) (10)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT2G18350.1	homeobox protein 24 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g020380.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Zinc finger, C2H2-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3573.2.S1_at	A	A1TS	POPTR_0005s12420	POPTR_0005s12420 (11)	scaffold_5:9168958-9169346(-) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT2G18350.1	homeobox protein 24 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g020380.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Zinc finger, C2H2-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3573.3.A1_at	A	A1TS	POPTR_0007s12970	POPTR_0007s12970 (11)	scaffold_7:13172331-13172877(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT2G18350.1	homeobox protein 24 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g020380.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Zinc finger, C2H2-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3574.1.A1_at	A	A1TS	POPTR_0016s00260	POPTR_0016s00260 (11)	scaffold_16:30353-30678(+) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g20040.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3575.1.S1_a_at	A	A1TS	POPTR_0001s30500	POPTR_0001s30500 (11)	scaffold_1:28987513-28987698(+) (11)	NA	Q948Z4	Snakin-1	AT5G59845.1	Gibberellin-regulated family protein 	LOC_Os03g55290.1	"GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	AC232874_8.1	Gibberellin regulated protein AC232874.1 30298-31672 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3575.1.S1_at	A	A1TS	POPTR_0001s30500	POPTR_0001s30500 (11)	scaffold_1:28987728-28987868(+) (11)	NA	Q948Z4	Snakin-1	AT5G59845.1	Gibberellin-regulated family protein 	LOC_Os03g55290.1	"GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	AC232874_8.1	Gibberellin regulated protein AC232874.1 30298-31672 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3575.2.S1_at	A	A1MS	POPTR_0001s30500	POPTR_0001s30500 (11)	scaffold_1:28987227-28987614(+) (11)	NA	Q948Z4	Snakin-1	AT5G59845.1	Gibberellin-regulated family protein 	LOC_Os03g55290.1	"GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	AC232874_8.1	Gibberellin regulated protein AC232874.1 30298-31672 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3575.3.S1_at	A	A1TS	POPTR_0009s09560	POPTR_0009s09560 (11)	scaffold_9:8427530-8428136(+) (11)	NA	Q948Z4	Snakin-1	AT5G59845.1	Gibberellin-regulated family protein 	LOC_Os03g14550.1	"GASR1 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, putative"	AC232874_8.1	Gibberellin regulated protein AC232874.1 30298-31672 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3576.1.A1_at	A	A1TS	POPTR_0004s18060	POPTR_0004s18060 (11)	scaffold_4:18073458-18073598(+) (11)	NA	Q6WWW4	E3 ubiquitin-protein ligase UPL3	AT4G38600.1	HEAT repeat ;HECT-domain (ubiquitin-transferase) 	LOC_Os02g01170.1	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.35764.2.A1_a_at	A	A1TS	POPTR_0010s08710	POPTR_0010s08710 (11)	scaffold_10:9585123-9588284(+) (11)	NA	Q9LQI7	Probable complex I intermediate-associated protein 30	AT1G17350.1	NADH:ubiquinone oxidoreductase intermediate-associated protein 30 	LOC_Os01g52720.1	"Complex I intermediate-associated protein 30 domain containing protein, putative, expressed"	Medtr8g025870.1	"auxin-induced-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35765.1.A1_at	A	A1TS	POPTR_0007s10580	POPTR_0007s10580 (10)	scaffold_7:10617033-10617183(+) (10)	NA	Q9FE83	F-box protein SKIP2	AT5G67250.1	SKP1/ASK1-interacting protein 2 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35786.1.A1_at	A	A1TS	POPTR_0008s13930	POPTR_0008s13930 (11)	scaffold_8:9193364-9195199(+) (11)	NA	Q9M647	IAA-alanine resistance protein 1	AT1G68100.1	ZIP metal ion transporter family 	LOC_Os08g36420.3	"metal cation transporter, putative, expressed"	NA	NA	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.35798.1.A1_at	A	A1MS	POPTR_0006s11020	POPTR_0006s11020 (10)	scaffold_6:8361777-8362050(+) (10)	NA	Q9LZV4	"Serine/threonine-protein kinase STN8, chloroplastic"	AT5G01920.1	Protein kinase superfamily protein 	LOC_Os05g40180.1	"serine/threonine-protein kinase stt7, chloroplast precursor, putative, expressed"	Medtr8g005520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.358.1.S1_at	A	A1TS	POPTR_0016s06680	POPTR_0016s06680 (11)	scaffold_16:4498997-4499160(+) (11)	NA	Q66GR0	Fasciclin-like arabinogalactan protein 17	AT5G06390.1	FASCICLIN-like arabinogalactan protein 17 precursor 	LOC_Os03g57460.1	"fasciclin domain containing protein, expressed"	Medtr2g104610.1	Beta-Ig-H3/fasciclin; Myristoyl-CoA:protein N-myristoyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.358.2.S1_at	A	A1TS	POPTR_0016s06680	POPTR_0016s06680 (11)	scaffold_16:4496224-4496676(+) (11)	NA	Q66GR0	Fasciclin-like arabinogalactan protein 17	AT5G06390.1	FASCICLIN-like arabinogalactan protein 17 precursor 	LOC_Os03g57460.1	"fasciclin domain containing protein, expressed"	Medtr2g104610.1	Beta-Ig-H3/fasciclin; Myristoyl-CoA:protein N-myristoyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35803.1.A1_s_at	A	A1TS	POPTR_0005s25760	POPTR_0005s25760 (11)	scaffold_5:23963043-23963411(+) (11)	NA	Q56XU4	Zinc finger CCCH domain-containing protein 6	AT1G19860.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os04g56750.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr1g024110.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.3586.1.S1_a_at	A	A1TS	POPTR_0001s08950	POPTR_0001s08950 (11)	scaffold_1:6859649-6859956(+) (11)	NA	NA	NA	AT4G11670.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3588.1.A1_s_at	A	A1TS	POPTR_0015s11820	POPTR_0015s11820 (11)	scaffold_15:12337997-12338336(-) (11)	NA	O04064	Floricaula/leafy homolog	AT5G61850.1	floral meristem identity control protein LEAFY (LFY) 	LOC_Os04g51000.1	"transcription factor FL, putative, expressed"	Medtr3g151360.1	Floricaula/leafy protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.3589.1.S1_at	A	A1TS	POPTR_0005s23660	POPTR_0005s23660 (11)	scaffold_5:22381594-22381834(+) (11)	POPTR_0002s04880 (7)	Q9ZWA6	Zinc finger protein MAGPIE	AT4G02670.1	indeterminate(ID)-domain 12 	LOC_Os03g10140.1	"ZOS3-04 - C2H2 zinc finger protein, expressed"	Medtr8g018830.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.3590.2.S1_s_at	A	A1TS	POPTR_0010s22990	POPTR_0010s22990 (11)	scaffold_10:19683005-19684283(+) (11)	NA	Q9FGZ9	Ubiquitin-like protein 5	AT5G42300.1	ubiquitin-like protein 5 	LOC_Os02g41820.1	expressed protein	Medtr3g105020.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35909.1.S1_at	A	A1MS	POPTR_0010s19530	POPTR_0010s19530 (11)	scaffold_10:17418539-17419084(+) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g03640.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g094020.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.35927.1.S1_a_at	A	A1TS	POPTR_0004s08570	POPTR_0004s08570 (11)	scaffold_4:7131588-7131912(+) (11)	NA	NA	NA	AT1G23890.1	NHL domain-containing protein 	LOC_Os08g31970.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3594.1.S1_at	A	A1TS	POPTR_0002s01990	POPTR_0002s01990 (10)	scaffold_2:1056781-1057877(-) (10)	NA	Q7XWU3	Probable cinnamyl alcohol dehydrogenase 6	AT4G39330.1	cinnamyl alcohol dehydrogenase 9 	LOC_Os04g15920.1	"dehydrogenase, putative, expressed"	Medtr1g031870.1	"Alcohol dehydrogenase, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.3594.2.S1_a_at	A	A1TS	POPTR_0001s38800	POPTR_0001s38800 (11)	scaffold_1:38084827-38085195(+) (11)	NA	Q9FPS9	Ubiquitin carboxyl-terminal hydrolase 15	AT1G17110.1	ubiquitin-specific protease 15 	LOC_Os02g14730.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.35947.1.S1_at	A	A1TS	POPTR_0013s06210	POPTR_0013s06210 (9)	scaffold_13:4602037-4602450(-) (9)	NA	Q9SYG9	Cation/calcium exchanger 4	AT5G17850.1	Sodium/calcium exchanger family protein 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr7g103490.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.35949.1.S1_at	A	A1TS	POPTR_0004s17940	POPTR_0004s17940 (10)	scaffold_4:17983314-17984642(+) (10)	NA	P55034	26S proteasome non-ATPase regulatory subunit 4	AT4G38630.1	regulatory particle non-ATPase 10 	LOC_Os03g13970.2	"26S proteasome non-ATPase regulatory subunit 4, putative, expressed"	Medtr5g022350.1	"von Willebrand factor, type A; Ubiquitin interacting motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3597.1.S1_s_at	A	A2TS	POPTR_0003s18590	POPTR_0003s18600 (11)//POPTR_0003s18590 (11)	scaffold_3:17615405-17616266(+) (11)//scaffold_3:17620230-17621157(+) (11)	NA	P13254	Methionine gamma-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.35976.1.S1_at	A	A1TS	POPTR_0002s18960	POPTR_0002s18960 (10)	scaffold_2:14839778-14841058(-) (10)	NA	O80719	Probable receptor-like protein kinase At2g47060	AT3G62220.1	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35988.1.A1_at	A	A1TS	POPTR_0010s16580	POPTR_0010s16580 (11)	scaffold_10:15498035-15498804(-) (11)	NA	Q9LMX4	Probable inactive purple acid phosphatase 1	AT1G13750.1	Purple acid phosphatases superfamily protein 	LOC_Os12g38750.2	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g073720.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.35988.2.S1_at	A	A1TS	POPTR_0001s33970	POPTR_0001s33970 (11)	scaffold_1:32122297-32122968(-) (11)	NA	Q67ZU1	Triacylglycerol lipase 2	AT5G14180.1	Myzus persicae-induced lipase 1 	LOC_Os08g41780.1	"triacylglycerol lipase precursor, putative, expressed"	Medtr6g025490.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.35988.3.S1_a_at	A	A1TS	POPTR_0001s33970	POPTR_0001s33970 (11)	scaffold_1:32124067-32127700(-) (11)	NA	Q67ZU1	Triacylglycerol lipase 2	AT5G14180.1	Myzus persicae-induced lipase 1 	LOC_Os08g41780.1	"triacylglycerol lipase precursor, putative, expressed"	Medtr6g025490.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.35988.4.A1_a_at	A	A1TS	POPTR_0010s16580	POPTR_0010s16580 (11)	scaffold_10:15498909-15499599(-) (11)	NA	Q9LMX4	Probable inactive purple acid phosphatase 1	AT1G13750.1	Purple acid phosphatases superfamily protein 	LOC_Os12g38750.2	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g073720.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.3600.1.S1_s_at	A	A1TS	POPTR_0002s15590	POPTR_0002s15590 (11)	scaffold_2:11635099-11635965(+) (11)	NA	P45432	COP9 signalosome complex subunit 1	AT3G61140.1	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os03g02540.1	"proteasome subunit, putative, expressed"	Medtr7g083770.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3601.1.S1_at	A	A1TS	POPTR_0010s04440	POPTR_0010s04440 (11)	scaffold_10:5535872-5537297(-) (11)	NA	NA	NA	AT1G59710.1	Protein of unknown function (DUF569) 	LOC_Os03g58740.1	expressed protein	Medtr5g038610.1	Cytosolic fatty-acid binding; Actin-crosslinking proteins 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3601.2.S1_at	A	A1TS	POPTR_0008s19850	POPTR_0008s19850 (9)	scaffold_8:13704421-13704966(+) (9)	NA	NA	NA	AT1G27100.1	Actin cross-linking protein 	LOC_Os07g09384.1	expressed protein	Medtr5g038610.1	Cytosolic fatty-acid binding; Actin-crosslinking proteins 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36016.1.S1_at	A	A1TS	POPTR_0016s03440	POPTR_0016s03440 (9)	scaffold_16:1802909-1805018(-) (11)	NA	P51831	3-oxoacyl-[acyl-carrier-protein] reductase	AT3G55290.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g39960.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr1g008910.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.36031.1.S1_at	A	A1TS	POPTR_0016s13430	POPTR_0016s13430 (9)	scaffold_16:12599661-12600322(-) (9)	NA	P81748	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os12g01680.1	"macrophage migration inhibitory factor, putative"	Medtr7g076390.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36032.1.S1_s_at	A	A1TS	POPTR_0002s26020	POPTR_0002s26020 (11)	scaffold_2:23017143-23017678(-) (11)	NA	NA	NA	AT1G04030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1); Has 1835 Blast hits to 1511 proteins in 238 species: Archae - 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants - 187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink). 	LOC_Os04g43230.1	expressed protein	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.36037.1.S1_at	A	A1TS	POPTR_0009s10370	POPTR_0009s10370 (11)	scaffold_9:8908810-8909320(-) (11)	NA	Q9SEU7	"Thioredoxin M3, chloroplastic"	AT2G15570.1	Thioredoxin superfamily protein 	LOC_Os04g35150.1	"thioredoxin, putative"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.36054.1.S1_at	A	A6TS	POPTR_0002s21890	POPTR_0002s21940 (11)//POPTR_0002s21970 (11)//POPTR_0002s21890 (11)//POPTR_0002s21920 (11)//POPTR_0002s21910 (11)//POPTR_0002s21960 (11)	scaffold_2:18567536-18567855(-) (11)//scaffold_2:18577630-18577949(-) (11)//scaffold_2:18582712-18583031(-) (11)//scaffold_2:18594127-18594446(-) (11)//scaffold_2:18611768-18612087(-) (11)//scaffold_2:18616815-18617134(-) (11)	POPTR_2003s00200 (6)	NA	NA	AT2G44310.1	Calcium-binding EF-hand family protein 	LOC_Os09g31040.1	"EF hand family protein, putative, expressed"	Medtr7g026040.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36072.1.A1_at	A	A1TS	POPTR_0016s03660	POPTR_0016s03660 (11)	scaffold_16:2015124-2015641(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36093.1.S1_at	A	A1TS	POPTR_0004s23880	POPTR_0004s23880 (11)	scaffold_4:22496387-22498064(-) (11)	NA	Q9JLI8	Squamous cell carcinoma antigen recognized by T-cells 3	AT4G24270.1	EMBRYO DEFECTIVE 140 	LOC_Os08g02130.2	"RNA recognition motif containing protein, putative, expressed"	AC235757_55.1	"RNA-processing protein, HAT helix AC235757.1 243101-237113 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.36102.1.A1_at	A	A1TS	POPTR_0009s06940	POPTR_0009s06940 (11)	scaffold_9:6609639-6610062(-) (11)	NA	Q9FI39	Cytochrome P450 705A5	AT3G20940.1	"cytochrome P450, family 705, subfamily A, polypeptide 30 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g111290.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.36103.1.S1_a_at	A	A2TS	POPTR_0006s01190	POPTR_0006s01190 (11)//POPTR_0006s01180 (9)	scaffold_6:658087-658226(-) (9)//scaffold_6:668854-668993(-) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.36103.1.S1_at	A	A1TS	POPTR_0006s01190	POPTR_0006s01190 (11)	scaffold_6:668585-668924(-) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.36115.1.S1_at	A	A1TS	POPTR_0006s24520	POPTR_0006s24520 (11)	scaffold_6:23103480-23104019(-) (11)	NA	NA	NA	AT2G26110.1	Protein of unknown function (DUF761) 	NA	NA	Medtr1g020210.1	"cDNA-5-encoded protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36161.1.S1_at	A	A1TS	POPTR_0022s00840	POPTR_0022s00840 (11)	scaffold_22:432768-434349(+) (11)	NA	Q9C5E7	"Pumilio homolog 6, chloroplastic"	AT4G25880.1	pumilio 6 	LOC_Os08g40830.2	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.36162.1.S1_at	A	A1TS	POPTR_0015s06030	POPTR_0015s06030 (11)	scaffold_15:6328100-6330084(-) (11)	NA	NA	NA	AT5G53330.1	Ubiquitin-associated/translation elongation factor EF1B protein 	LOC_Os06g06530.1	"proline-rich cell wall protein-like, putative, expressed"	Medtr3g124790.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3617.1.A1_a_at	A	A1TS	POPTR_0017s10180	POPTR_0017s10180 (11)	scaffold_17:9432406-9432742(-) (11)	NA	Q91WC0	SET domain-containing protein 3	AT5G14260.2	Rubisco methyltransferase family protein 	LOC_Os12g13460.1	"SET domain-containing protein, putative, expressed"	Medtr6g025190.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36234.1.S1_at	A	A1TS	POPTR_0006s00270	POPTR_0006s00270 (11)	scaffold_6:48498-49790(-) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr2g033600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36257.1.S1_at	A	A1TS	POPTR_0010s20030	POPTR_0010s20030 (11)	scaffold_10:17790259-17790612(+) (11)	NA	O04197	Coronatine-insensitive protein 1	AT2G39940.1	RNI-like superfamily protein 	LOC_Os05g37690.1	"OsFBL23 - F-box domain and LRR containing protein, expressed"	Medtr5g089200.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36261.1.S1_a_at	A	A1TS	POPTR_0002s00640	POPTR_0002s00640 (11)	scaffold_2:284702-284967(+) (11)	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT3G57710.1	Protein kinase superfamily protein 	LOC_Os04g51050.2	"OsWAK53b - OsWAK receptor-like protein kinase, expressed"	Medtr7g089090.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36261.2.S1_a_at	A	A2TS	POPTR_0002s00510	POPTR_0002s00510 (9)//POPTR_0002s00640 (9)	scaffold_2:199424-199456(-) (9)//scaffold_2:284589-284621(+) (9)	NA	O80795	Probable inactive receptor-like protein kinase At1g65250	AT3G57710.1	Protein kinase superfamily protein 	LOC_Os04g51050.1	"OsWAK53b - OsWAK receptor-like protein kinase, expressed"	Medtr7g089090.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.36261.2.S1_at	A	A1TS	POPTR_0002s00510	POPTR_0002s00510 (10)	scaffold_2:199079-199600(-) (11)	NA	O80795	Probable inactive receptor-like protein kinase At1g65250	AT3G57710.1	Protein kinase superfamily protein 	LOC_Os04g51050.1	"OsWAK53b - OsWAK receptor-like protein kinase, expressed"	Medtr7g089090.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.36282.1.S1_s_at	A	A1TS	POPTR_0017s12210	POPTR_0017s12210 (11)	scaffold_17:12391453-12391905(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G61430.1	NAC domain containing protein 100 	LOC_Os04g38720.1	"no apical meristem protein, putative, expressed"	Medtr6g013180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.36284.1.A1_s_at	A	A1TS	POPTR_0010s20530	POPTR_0010s20530 (11)	scaffold_10:18076458-18077660(-) (11)	NA	Q05932	"Folylpolyglutamate synthase, mitochondrial"	AT5G05980.1	DHFS-FPGS homolog B 	LOC_Os03g02030.1	"folylpolyglutamate synthase, mitochondrial precursor, putative, expressed"	Medtr5g088540.1	Folylpolyglutamate synthetase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3630.1.S1_at	A	A1TS	POPTR_0017s01540	POPTR_0017s01540 (10)	scaffold_17:1055452-1057817(-) (10)	NA	O59413	Intracellular protease 1	AT3G02720.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os04g57590.1	"DJ-1 family protein, putative, expressed"	Medtr3g086340.2	"Peptidase C56, PfpI "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3630.2.S1_at	A	A1TS	POPTR_0017s01530	POPTR_0017s01530 (11)	scaffold_17:1054887-1055231(-) (11)	NA	Q9V1F8	Intracellular protease 1	AT3G02720.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os04g57590.1	"DJ-1 family protein, putative, expressed"	Medtr3g086340.2	"Peptidase C56, PfpI "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36300.1.S1_at	A	A1TS	POPTR_0003s16950	POPTR_0003s16950 (11)	scaffold_3:16435604-16435686(-) (11)	NA	Q9C5U1	Histidine kinase 3	AT1G27320.1	histidine kinase 3 	LOC_Os01g69920.1	"histidine kinase, putative, expressed"	Medtr3g104030.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.36300.1.S1_s_at	A	A2TS	POPTR_0001s13740	POPTR_0001s13740 (11)//POPTR_0003s16950 (11)	scaffold_1:10805536-10806605(-) (11)//scaffold_3:16435629-16436606(-) (11)	NA	Q9C5U1	Histidine kinase 3	AT1G27320.1	histidine kinase 3 	LOC_Os01g69920.1	"histidine kinase, putative, expressed"	Medtr3g104030.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.36311.1.S1_s_at	A	A1TS	POPTR_0015s14380	POPTR_0015s14380 (11)	scaffold_15:14002723-14003296(+) (11)	NA	Q42971	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
PtpAffx.36330.1.S1_at	A	A1TS	POPTR_0005s07470	POPTR_0005s07470 (11)	scaffold_5:5100827-5101179(-) (11)	NA	NA	NA	AT5G65250.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g37820.1	expressed protein	Medtr3g101950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3635.1.S1_x_at	A	A1TS	POPTR_0009s05240	POPTR_0009s05240 (11)	scaffold_9:5369440-5370873(-) (11)	NA	Q56YA5	Serine--glyoxylate aminotransferase	AT2G13360.2	alanine:glyoxylate aminotransferase 	LOC_Os08g39300.4	"aminotransferase, putative, expressed"	Medtr3g071320.2	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36360.1.A1_a_at	A	A1TS	POPTR_0003s16470	POPTR_0003s16470 (11)	scaffold_3:16060544-16061167(-) (11)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g33510.2	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g005100.1	"Uncharacterized protein At2g33490, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36360.2.A1_at	A	A1MS	POPTR_0003s16470	POPTR_0003s16470 (11)	scaffold_3:16060370-16060557(-) (11)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g33510.2	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g005100.1	"Uncharacterized protein At2g33490, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36362.1.S1_at	A	A1TS	POPTR_0005s25710	POPTR_0005s25710 (11)	scaffold_5:23914728-23915946(+) (11)	NA	NA	NA	AT1G30845.1	unknown protein; Has 120 Blast hits to 120 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 37; Plants - 23; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 	LOC_Os03g03530.1	expressed protein	Medtr4g134050.1	"T17H7.16, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36367.1.S1_at	A	A1TS	POPTR_0019s13920	POPTR_0019s13920 (10)	scaffold_19:14770009-14770198(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36421.1.S1_at	A	A1TS	POPTR_0015s15390	POPTR_0015s15390 (11)	scaffold_15:14683197-14683730(+) (11)	NA	NA	NA	AT5G45030.2	Trypsin family protein 	LOC_Os08g31470.2	"peptidase, trypsin-like serine and cysteine proteases, putative, expressed"	Medtr4g114550.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36424.1.A1_at	A	A1TS	POPTR_0013s11340	POPTR_0013s11340 (11)	scaffold_13:11992021-11992559(+) (11)	NA	Q75VW3	Chaperone protein dnaJ	AT4G09350.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os11g10990.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g126720.1	Chaperone DnaJ 	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.36446.1.A1_at	A	A1TS	POPTR_0007s05810	POPTR_0007s05810 (11)	scaffold_7:3963336-3963551(-) (11)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
PtpAffx.36446.1.A1_s_at	A	A2TS	POPTR_0005s08050	POPTR_0005s08050 (11)//POPTR_0007s05810 (11)	scaffold_5:5540612-5541056(-) (11)//scaffold_7:3963556-3964006(-) (11)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
PtpAffx.3645.1.S1_at	A	A1TS	POPTR_0005s27300	POPTR_0005s27300 (10)	scaffold_5:25010169-25011090(+) (10)	NA	P17598	Catalase isozyme 1	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
PtpAffx.36463.1.S1_at	A	A1TS	POPTR_0001s46990	POPTR_0001s46990 (11)	scaffold_1:47322269-47325270(-) (11)	NA	Q9SUC0	"Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial"	AT4G20930.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g46372.1	"dehydrogenase, putative, expressed"	Medtr2g129830.1	"Hydroxyacid dehydrogenase/reductase; 6-phosphogluconate dehydrogenase, C-terminal-like; ; "	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.36466.1.S1_at	A	A1TS	POPTR_0006s20910	POPTR_0006s20910 (11)	scaffold_6:19951629-19952470(-) (11)	NA	NA	NA	AT2G41950.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 24 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g12560.1	expressed protein	Medtr7g112320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3647.1.A1_at	A	A1TS	POPTR_0002s12060	POPTR_0002s12060 (11)	scaffold_2:8971635-8972139(+) (11)	NA	NA	NA	AT2G26680.1	CONTAINS InterPro DOMAIN/s: Methyltransferase FkbM (InterPro:IPR006342); Has 1073 Blast hits to 1073 proteins in 243 species: Archae - 45; Bacteria - 509; Metazoa - 0; Fungi - 4; Plants - 60; Viruses - 4; Other Eukaryotes - 451 (source: NCBI BLink). 	LOC_Os03g36910.1	"SAM-dependent methyltransferase, putative, expressed"	Medtr8g120240.1	Methyltransferase FkbM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36476.1.A1_s_at	A	A1TS	POPTR_0010s05560	POPTR_0010s05560 (11)	scaffold_10:6992213-6992557(-) (11)	NA	NA	NA	AT3G26600.1	armadillo repeat only 4 	LOC_Os09g36550.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g034510.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36490.1.A1_at	A	A1TS	POPTR_0005s17540	POPTR_0005s17540 (10)	scaffold_5:15119606-15120310(+) (10)	NA	Q3E911	Pentatricopeptide repeat-containing protein At5g27460	AT5G27460.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g55310.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36492.2.S1_a_at	A	A1TS	POPTR_0001s08310	POPTR_0001s08310 (11)	scaffold_1:6338811-6339280(-) (11)	NA	NA	NA	AT4G37740.1	growth-regulating factor 2 	LOC_Os04g48510.1	"growth regulating factor protein, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.36496.1.S1_at	A	A1TS	POPTR_0015s07660	POPTR_0015s07660 (10)	scaffold_15:8958388-8958855(-) (10)	NA	Q9C826	Xanthoxin dehydrogenase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g61740.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr6g025640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.36508.1.S1_at	A	A1TS	POPTR_0004s03190	POPTR_0004s03190 (11)	scaffold_4:2143401-2144001(+) (11)	NA	Q9FH37	Transcription factor ILR3	AT5G54680.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g04390.2	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr4g111220.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.36514.1.S1_at	A	A2TS	POPTR_0001s15320	POPTR_0001s15320 (11)//POPTR_0003s07870 (9)	scaffold_1:12160492-12161798(+) (11)//scaffold_3:9388058-9389383(+) (9)	NA	Q54HG7	"Methylglutaconyl-CoA hydratase, mitochondrial"	AT4G16800.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os02g43720.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g105120.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.36517.1.S1_at	A	A1MS	POPTR_0015s11590	POPTR_0015s11590 (10)	scaffold_15:12149833-12150227(+) (10)	NA	NA	NA	AT3G48860.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36518.1.S1_s_at	A	A1TS	POPTR_0011s11910	POPTR_0011s11910 (11)	scaffold_11:14687396-14687604(-) (11)	NA	NA	NA	AT1G28280.2	VQ motif-containing protein 	LOC_Os01g54400.1	"VQ domain containing protein, putative, expressed"	Medtr2g017460.1	DNA-binding WRKY; VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36544.1.S1_s_at	A	A1TS	POPTR_0017s10940	POPTR_0017s10940 (11)	scaffold_17:10534778-10535031(+) (11)	NA	NA	NA	AT3G55250.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to 46 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g45030.1	"calcium homeostasis regulator CHoR1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36554.1.A1_at	A	A1TS	POPTR_0011s02660	POPTR_0011s02660 (11)	scaffold_11:2577006-2577837(+) (11)	NA	P19950	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os02g06700.2	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.36571.1.S1_at	A	A1TS	POPTR_0008s03930	POPTR_0008s03930 (11)	scaffold_8:2158619-2158671(-) (11)	NA	Q7Z2K6	Endoplasmic reticulum metallopeptidase 1	AT5G20660.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os04g43916.2	expressed protein	Medtr1g120840.1	ArgE/dapE/ACY1/CPG2/yscS; Peptidase M28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.36571.1.S1_s_at	A	A1TS	POPTR_0008s03930	POPTR_0008s03930 (11)	scaffold_8:2158690-2158817(-) (11)	NA	Q7Z2K6	Endoplasmic reticulum metallopeptidase 1	AT5G20660.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os04g43916.2	expressed protein	Medtr1g120840.1	ArgE/dapE/ACY1/CPG2/yscS; Peptidase M28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.3661.1.A1_s_at	A	A1TS	POPTR_0018s11390	POPTR_0018s11390 (11)	scaffold_18:12155881-12156434(-) (11)	NA	Q9FDX1	F-box protein SKIP1	AT5G57900.1	SKP1 interacting partner 1 	LOC_Os08g16840.1	"OsFBL45 - F-box domain and LRR containing protein, expressed"	Medtr8g145080.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.36616.1.S1_at	A	A1TS	POPTR_0018s00630	POPTR_0018s00630 (11)	scaffold_18:562687-563701(-) (11)	NA	Q8L493	"Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic"	AT5G57850.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os02g17330.1	"aminotransferase domain containing protein, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.36628.1.S1_at	A	A1MS	POPTR_0010s13660	POPTR_0010s13660 (9)	scaffold_10:13459984-13460374(+) (9)	NA	NA	NA	AT1G68580.2	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os08g33420.1	"agenet domain containing protein, expressed"	Medtr5g068170.1	Bromo adjacent region; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
PtpAffx.36628.2.S1_a_at	A	A1TS	POPTR_0010s13660	POPTR_0010s13660 (11)	scaffold_10:13459551-13459706(+) (11)	NA	NA	NA	AT1G68580.2	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os08g33420.1	"agenet domain containing protein, expressed"	Medtr5g068170.1	Bromo adjacent region; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
PtpAffx.36636.1.A1_at	A	A1TS	POPTR_0010s04420	POPTR_0010s04420 (11)	scaffold_10:5516198-5516679(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3665.1.S1_a_at	A	A1TS	POPTR_0010s07400	POPTR_0010s07400 (11)	scaffold_10:8458688-8459073(-) (11)	NA	P54144	Ammonium transporter 1 member 1	AT4G13510.1	ammonium transporter 1;1 	LOC_Os04g43070.1	"ammonium transporter protein, putative, expressed"	Medtr1g065600.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.36650.1.S1_s_at	A	A1TA	POPTR_0006s00270	POPTR_0006s00270 (11)	scaffold_6:51135-51337(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr2g033600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3667.1.A1_s_at	A	A1TS	POPTR_0013s03220	POPTR_0013s03220 (11)	scaffold_13:1961154-1961717(-) (11)	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr8g139670.1	Sodium/hydrogen exchanger subfamily 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.36675.1.A1_at	A	A1TS	POPTR_0013s13080	POPTR_0013s13080 (11)	scaffold_13:13659290-13660381(+) (11)	NA	NA	NA	AT3G59670.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37440.2); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os05g30340.2	expressed protein	Medtr4g128490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36680.1.S1_s_at	A	A1TS	POPTR_0002s24080	POPTR_0002s24080 (11)	scaffold_2:21530927-21531701(-) (11)	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT3G25480.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g66600.2	"rhodanese-like, putative, expressed"	Medtr7g092420.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36701.1.S1_s_at	A	A2TS	POPTR_0004s17010	POPTR_0004s17010 (11)//POPTR_0009s12780 (11)	scaffold_4:17362488-17363423(-) (11)//scaffold_9:10371755-10372678(-) (11)	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G21270.2	ubiquitin fusion degradation 1 	LOC_Os02g08480.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.36725.1.S1_at	A	A1TS	POPTR_0005s00200	POPTR_0005s00200 (11)	scaffold_5:2408-2723(-) (11)	NA	Q8L7S8	"DEAD-box ATP-dependent RNA helicase 3, chloroplastic"	AT5G26742.2	DEAD box RNA helicase (RH3) 	LOC_Os03g61220.2	"DEAD-box ATP-dependent RNA helicase 3, putative, expressed"	Medtr7g134530.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.36741.1.S1_at	A	A1TS	POPTR_0015s09740	POPTR_0015s09740 (10)	scaffold_15:10879024-10879411(+) (10)	NA	P37117	Cytochrome P450 71A4	AT3G48270.1	"cytochrome P450, family 71, subfamily A, polypeptide 26 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.36744.1.A1_at	A	A1TS	POPTR_0002s02120	POPTR_0002s02120 (11)	scaffold_2:1151238-1151654(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36758.1.A1_at	A	A1TS	POPTR_0010s03150	POPTR_0010s03150 (11)	scaffold_10:3825241-3825744(-) (11)	NA	Q94ID2	"Adenylate isopentenyltransferase 5, chloroplastic"	AT5G19040.1	isopentenyltransferase 5 	LOC_Os03g59570.1	"IPP transferase, putative, expressed"	Medtr1g140830.1	Isopentenyl transferase-like 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.36779.1.A1_a_at	A	A1TS	POPTR_0003s17610	POPTR_0003s17610 (11)	scaffold_3:16925135-16925633(+) (11)	NA	NA	NA	AT1G04770.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g43040.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g064920.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36779.2.A1_a_at	A	A1TS	POPTR_0003s17610	POPTR_0003s17610 (11)	scaffold_3:16925135-16925641(+) (11)	NA	NA	NA	AT1G04770.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g43040.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g064920.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3678.1.A1_at	A	A1TS	POPTR_0002s24680	POPTR_0002s24680 (9)	scaffold_2:21974050-21974660(+) (9)	NA	Q8GYN5	RPM1-interacting protein 4	AT3G25070.1	RPM1 interacting protein 4 	LOC_Os03g63140.2	"nitrate-induced NOI protein, expressed"	Medtr2g029230.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36782.1.A1_s_at	A	A1TS	POPTR_0009s01920	POPTR_0009s01920 (11)	scaffold_9:2386441-2387730(-) (11)	NA	Q9FF55	Protein disulfide isomerase-like 1-4	AT5G60640.1	PDI-like 1-4 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.36785.1.A1_a_at	A	A1TS	POPTR_0006s11760	POPTR_0006s11760 (11)	scaffold_6:8953644-8953932(+) (11)	NA	NA	NA	AT3G11290.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os12g10550.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g093090.1	"PIF-like orf1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36785.1.A1_at	A	A1TS	POPTR_0006s11760	POPTR_0006s11760 (11)	scaffold_6:8953596-8954301(+) (11)	NA	NA	NA	AT3G11290.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os12g10550.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g093090.1	"PIF-like orf1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36786.1.S1_at	A	A1TS	POPTR_0007s08490	POPTR_0007s08490 (11)	scaffold_7:7343369-7343904(+) (11)	NA	Q9M060	Eukaryotic translation initiation factor 6-2	AT3G55620.1	Translation initiation factor IF6 	LOC_Os07g44620.2	"eukaryotic translation initiation factor 6, putative, expressed"	Medtr7g035240.1	Translation initiation factor IF6 	GO:0070925|organelle assembly||GO:0042256|mature ribosome assembly	GO:0043022|ribosome binding	NA
PtpAffx.36788.1.S1_at	A	A1TS	POPTR_0005s12140	POPTR_0005s12140 (11)	scaffold_5:8906508-8906904(-) (11)	NA	Q39027	Mitogen-activated protein kinase 7	AT2G18170.1	MAP kinase 7 	LOC_Os06g48590.2	"CGMC_MAPKCMGC_2_SLT2y_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g134400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.368.1.A1_at	A	A1TS	POPTR_0006s04060	POPTR_0006s04060 (11)	scaffold_6:2738715-2739131(-) (11)	NA	Q55EX9	Putative methyltransferase DDB_G0268948	AT2G41380.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g20206.1	"methyltransferase, putative"	Medtr7g107220.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.36802.1.S1_at	A	A1TS	POPTR_0008s10580	POPTR_0008s10580 (10)	scaffold_8:6623560-6623962(-) (10)	NA	Q9LSP7	Ubiquitin-conjugating enzyme E2 32	AT3G17000.1	ubiquitin-conjugating enzyme 32 	LOC_Os03g19500.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g137700.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.36802.2.S1_at	A	A1TS	POPTR_0010s15390	POPTR_0010s15390 (11)	scaffold_10:14663930-14664416(+) (11)	NA	Q9LSP7	Ubiquitin-conjugating enzyme E2 32	AT3G17000.1	ubiquitin-conjugating enzyme 32 	LOC_Os03g19500.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g137700.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.36812.1.A1_a_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22925484-22925634(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36812.2.A1_a_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22925380-22925593(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36812.3.A1_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22925337-22925825(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36825.1.A1_at	A	A1TS	POPTR_0014s13790	POPTR_0014s13790 (9)	scaffold_14:10090819-10091826(+) (9)	NA	NA	NA	AT1G06460.1	alpha-crystallin domain 32.1 	NA	NA	Medtr5g099280.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36825.1.A1_s_at	A	A1TS	POPTR_0014s13790	POPTR_0014s13790 (11)	scaffold_14:10090795-10091774(+) (11)	NA	NA	NA	AT1G06460.1	alpha-crystallin domain 32.1 	NA	NA	Medtr5g099280.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36845.1.S1_at	A	A1MS	POPTR_0003s11210	POPTR_0003s11210 (11)	scaffold_3:12061777-12061887(+) (11)	NA	P29001	Acid beta-fructofuranosidase	AT1G12240.1	Glycosyl hydrolases family 32 protein 	LOC_Os04g45290.1	"glycosyl hydrolases, putative, expressed"	Medtr8g106250.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36845.1.S1_s_at	A	A1TS	POPTR_0003s11210	POPTR_0003s11210 (11)	scaffold_3:12061907-12062065(+) (11)	NA	P29001	Acid beta-fructofuranosidase	AT1G12240.1	Glycosyl hydrolases family 32 protein 	LOC_Os04g45290.1	"glycosyl hydrolases, putative, expressed"	Medtr8g106250.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36849.1.S1_at	A	A1TS	POPTR_0007s15150	POPTR_0007s15150 (10)	scaffold_7:14778534-14779078(+) (10)	NA	P59326	YTH domain family protein 1	AT3G13060.2	evolutionarily conserved C-terminal region 5 	LOC_Os08g44200.1	"ECT5, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36852.1.S1_at	A	A1TS	POPTR_0014s05070	POPTR_0014s05070 (11)	scaffold_14:3874025-3875757(-) (11)	NA	Q6Z7L8	Rac-like GTP-binding protein 7	AT2G44690.1	Arabidopsis RAC-like 9 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.36859.1.A1_at	A	A1TS	POPTR_0014s15260	POPTR_0014s15260 (11)	scaffold_14:11331849-11332906(+) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT4G22010.1	SKU5  similar 4 	LOC_Os06g46500.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.36865.1.A1_at	A	A1TS	POPTR_0019s12310	POPTR_0019s12310 (11)	scaffold_19:13373291-13373800(+) (11)	NA	Q9SIL7	Fasciclin-like arabinogalactan protein 6	AT2G20520.1	FASCICLIN-like arabinogalactan 6 	LOC_Os01g47780.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36866.1.A1_at	A	A2TA	POPTR_0463s00220	POPTR_0463s00220 (10)//POPTR_0188s00200 (9)	scaffold_188:1760-8812(+) (11)//scaffold_463:11497-12035(+) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G25390.1	Protein kinase superfamily protein 	LOC_Os01g04409.1	"OsWAK1 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr1g140520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.36873.1.S1_at	A	A1TA	POPTR_0013s05360	POPTR_0013s05360 (11)	scaffold_13:3830898-3831255(+) (11)	NA	Q9FK59	Eukaryotic translation initiation factor 4E type 3	AT5G18110.1	novel cap-binding protein 	LOC_Os03g15590.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr6g031030.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
PtpAffx.36879.1.A1_at	A	A1TS	POPTR_0007s01580	POPTR_0007s01580 (11)	scaffold_7:889928-890114(-) (11)	NA	O22862	Probable peroxidase 26	AT2G43480.1	Peroxidase superfamily protein 	LOC_Os10g41720.1	"peroxidase precursor, putative, expressed"	Medtr7g103680.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.36879.1.A1_s_at	A	A1TS	POPTR_0007s01580	POPTR_0007s01580 (11)	scaffold_7:890101-890195(-) (11)	NA	O22862	Probable peroxidase 26	AT2G43480.1	Peroxidase superfamily protein 	LOC_Os10g41720.1	"peroxidase precursor, putative, expressed"	Medtr7g103680.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.36881.1.A1_s_at	A	A1TS	POPTR_0001s02490	POPTR_0001s02490 (11)	scaffold_1:1937778-1938310(-) (11)	NA	O49686	Abscisic acid receptor PYR1	AT4G17870.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os10g42280.1	"cyclase/dehydrase family protein, putative, expressed"	Medtr1g020630.1	Bet v I allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36888.1.S1_at	A	A1TS	POPTR_0001s10310	POPTR_0001s10310 (10)	scaffold_1:8004899-8006139(-) (10)	NA	Q9M373	Arabinogalactan peptide 20	AT3G61640.1	arabinogalactan protein 20 	LOC_Os01g46850.1	expressed protein	Medtr3g124660.1	Protein of unknown function DUF1070 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36891.1.S1_at	A	A1TS	POPTR_0008s03970	POPTR_0008s03970 (11)	scaffold_8:2188730-2191024(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36899.1.A1_at	A	A1TS	POPTR_0005s24230	POPTR_0005s24230 (11)	scaffold_5:22848754-22849045(+) (11)	NA	P19873	Inhibitor of trypsin and hageman factor	AT5G43580.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr5g097390.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.3690.1.A1_at	A	A1TS	POPTR_0018s08760	POPTR_0018s08760 (11)	scaffold_18:9689152-9689688(-) (11)	NA	NA	NA	AT5G19540.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g29780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36902.1.A1_s_at	A	A1TS	POPTR_0010s09180	POPTR_0010s09180 (11)	scaffold_10:10044906-10045098(-) (11)	NA	P24805	Stem-specific protein TSJT1	AT5G43830.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233674_1.1	"Stem-specific protein TSJT1, related AC233674.1 2329-1 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36902.2.A1_s_at	A	A1TS	POPTR_0008s15820	POPTR_0008s15820 (11)	scaffold_8:10534679-10534761(+) (11)	NA	P24805	Stem-specific protein TSJT1	AT5G43830.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233674_1.1	"Stem-specific protein TSJT1, related AC233674.1 2329-1 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36902.3.A1_at	A	A1TS	POPTR_0010s09180	POPTR_0010s09180 (11)	scaffold_10:10045995-10046115(-) (11)	NA	P24805	Stem-specific protein TSJT1	AT5G43830.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233674_1.1	"Stem-specific protein TSJT1, related AC233674.1 2329-1 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36904.1.A1_at	A	A1TS	POPTR_0004s18100	POPTR_0004s18100 (11)	scaffold_4:18112072-18112671(+) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT2G16750.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os03g13820.1	"protein kinase family protein, putative, expressed"	Medtr4g098500.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.36925.1.A1_at	A	A1TS	POPTR_0011s03180	POPTR_0011s03180 (10)	scaffold_11:3269797-3271744(-) (10)	NA	O04147	Cyclic phosphodiesterase	AT4G18930.1	RNA ligase/cyclic nucleotide phosphodiesterase family protein 	LOC_Os05g44170.1	"cyclic phosphodiesterase, putative, expressed"	Medtr4g136340.1	Appr>p cyclic nucleotide phosphodiesterase 	NA	GO:0004112|cyclic-nucleotide phosphodiesterase activity	NA
PtpAffx.3693.1.S1_at	A	A1TS	POPTR_0006s10300	POPTR_0006s10300 (10)	scaffold_6:7720406-7722321(+) (10)	NA	Q38833	"Chlorophyll synthase, chloroplastic"	AT3G51820.1	UbiA prenyltransferase family protein 	LOC_Os05g28200.1	"prenyltransferase, putative, expressed"	NA	NA	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.36933.1.S1_at	A	A1TS	POPTR_0019s00820	POPTR_0019s00820 (11)	scaffold_19:545558-546013(-) (11)	NA	NA	NA	AT5G63640.1	ENTH/VHS/GAT family protein 	LOC_Os08g01740.2	"VHS and GAT domain containing protein, expressed"	Medtr4g144470.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.36933.2.S1_a_at	A	A1TS	POPTR_0019s00820	POPTR_0019s00820 (11)	scaffold_19:547639-548837(-) (11)	NA	NA	NA	AT5G63640.1	ENTH/VHS/GAT family protein 	LOC_Os08g01740.2	"VHS and GAT domain containing protein, expressed"	Medtr4g144470.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.36979.1.A1_at	A	A1TS	POPTR_0005s25680	POPTR_0005s25680 (11)	scaffold_5:23901094-23901462(+) (11)	NA	NA	NA	AT1G19900.1	glyoxal oxidase-related protein 	LOC_Os03g15320.1	"glyoxal oxidase-related, putative, expressed"	Medtr1g028280.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3698.1.A1_at	A	A1TS	POPTR_0005s19960	POPTR_0005s19960 (11)	scaffold_5:18947117-18947594(-) (11)	NA	Q1JQ66	Solute carrier family 35 member E3	AT1G77610.1	EamA-like transporter family protein 	LOC_Os08g01410.1	"phosphate/phosphoenolpyruvate translocator-related protein, putative, expressed"	Medtr1g037460.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.3698.2.S1_at	A	A1TS	POPTR_0002s08490	POPTR_0002s08490 (10)	scaffold_2:5935704-5936084(+) (10)	NA	Q1JQ66	Solute carrier family 35 member E3	AT1G77610.1	EamA-like transporter family protein 	LOC_Os08g01410.1	"phosphate/phosphoenolpyruvate translocator-related protein, putative, expressed"	Medtr1g037460.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.36985.1.A1_at	A	A1MS	POPTR_0003s03360	POPTR_0003s03360 (9)	scaffold_3:3758263-3758421(-) (9)	NA	NA	NA	AT4G17140.3	pleckstrin homology (PH) domain-containing protein 	LOC_Os02g27110.1	expressed protein	Medtr5g013980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36994.1.S1_at	A	A1TS	POPTR_0001s15020	POPTR_0001s15020 (11)	scaffold_1:9292455-9292654(+) (11)//scaffold_1:11860533-11860732(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36994.1.S1_s_at	A	A1TS	POPTR_0001s15030	POPTR_0001s15030 (11)	scaffold_1:9297056-9298136(+) (9)//scaffold_1:11863650-11864726(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.36995.1.A1_at	A	A1TS	POPTR_0007s13510	POPTR_0007s13510 (11)	scaffold_7:13565464-13566020(+) (11)	NA	Q8H0V1	CDK5RAP1-like protein	AT4G36390.1	Methylthiotransferase 	LOC_Os11g38030.1	"CDK5RAP1, putative, expressed"	Medtr5g021160.1	Elongator protein 3/MiaB/NifB 	GO:0044260|cellular macromolecule metabolic process||GO:0009451|RNA modification	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0003824|catalytic activity"	NA
PtpAffx.37008.1.S1_at	A	A1TS	POPTR_0005s09940	POPTR_0005s09940 (11)	scaffold_5:7050376-7051150(-) (11)	NA	Q9SHE7	Ubiquitin-NEDD8-like protein RUB1	AT1G31340.1	related to ubiquitin 1 	LOC_Os09g25320.1	"ubiquitin family protein, putative, expressed"	Medtr5g100010.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3701.1.S1_at	A	A1TS	POPTR_0015s14810	POPTR_0015s14810 (11)	scaffold_15:14277763-14278397(-) (11)	NA	O50401	Trehalose-phosphate phosphatase	AT5G51460.2	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g40550.2	"CPuORF23 - conserved peptide uORF-containing transcript, expressed"	Medtr3g009920.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.3701.2.S1_at	A	A1TS	POPTR_0012s14700	POPTR_0012s14700 (11)	scaffold_12:14488368-14489107(-) (11)	NA	O50401	Trehalose-phosphate phosphatase	AT5G51460.2	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g40550.2	"CPuORF23 - conserved peptide uORF-containing transcript, expressed"	Medtr3g009920.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.37010.1.A1_a_at	A	A1TS	POPTR_0001s20450	POPTR_0001s20450 (11)	scaffold_1:18415623-18415958(+) (11)//scaffold_667:11157-11492(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT1G72710.1	casein kinase 1-like protein 2 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr8g021280.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37010.1.A1_at	A	A1TS	POPTR_0001s20450	POPTR_0001s20450 (9)	scaffold_1:18415049-18415717(+) (9)	NA	P42158	Casein kinase I isoform delta-like	AT1G72710.1	casein kinase 1-like protein 2 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr8g021280.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37010.2.A1_at	A	A1MS	POPTR_0001s20450	POPTR_0001s20450 (9)	scaffold_1:18414034-18414798(+) (10)	NA	P42158	Casein kinase I isoform delta-like	AT1G72710.1	casein kinase 1-like protein 2 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr8g021280.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.3702.1.A1_a_at	A	A1TS	POPTR_0001s01130	POPTR_0001s01130 (11)	scaffold_1:883324-883637(-) (11)	NA	P41091	Eukaryotic translation initiation factor 2 subunit 3	AT1G04170.1	eukaryotic translation initiation factor 2 gamma subunit 	LOC_Os12g41400.1	"eukaryotic translation initiation factor 2 subunit gamma, putative, expressed"	Medtr2g091680.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.3702.2.A1_a_at	A	A1TS	POPTR_0001s01130	POPTR_0001s01130 (11)	scaffold_1:883182-883637(-) (11)	NA	P41091	Eukaryotic translation initiation factor 2 subunit 3	AT1G04170.1	eukaryotic translation initiation factor 2 gamma subunit 	LOC_Os12g41400.1	"eukaryotic translation initiation factor 2 subunit gamma, putative, expressed"	Medtr2g091680.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.37022.1.A1_s_at	A	A1TS	POPTR_0009s12730	POPTR_0009s12730 (11)	scaffold_9:10337325-10337750(-) (11)	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT4G38960.1	B-box type zinc finger family protein 	LOC_Os09g35880.1	"B-box zinc finger family protein, putative, expressed"	Medtr5g021510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.37028.1.A1_s_at	A	A1TS	POPTR_0001s47020	POPTR_0001s47020 (11)	scaffold_1:47351207-47351640(+) (11)	NA	P36181	Heat shock cognate protein 80	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.37031.1.A1_at	A	A1TS	POPTR_0001s08480	POPTR_0001s08480 (11)	scaffold_1:6462701-6463330(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37035.1.A1_at	A	A1TS	POPTR_0006s14720	POPTR_0006s14720 (11)	scaffold_6:12081724-12082153(-) (11)	NA	Q8GZ92	Protein Brevis radix-like 4	AT5G20540.1	BREVIS RADIX-like 4 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37035.2.S1_a_at	A	A1TS	POPTR_0018s07190	POPTR_0018s07190 (11)	scaffold_18:7376429-7376479(-) (11)	NA	Q8GZ92	Protein Brevis radix-like 4	AT5G20540.1	BREVIS RADIX-like 4 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37035.3.A1_at	A	A1TS	POPTR_0018s07190	POPTR_0018s07190 (11)	scaffold_18:7376231-7379627(-) (11)	NA	Q8GZ92	Protein Brevis radix-like 4	AT5G20540.1	BREVIS RADIX-like 4 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37036.2.S1_a_at	A	A1TS	POPTR_0013s00270	POPTR_0013s00270 (10)	scaffold_13:42867-43495(-) (10)	NA	Q9SXQ6	Flap endonuclease 1a	AT5G26680.2	5'-3' exonuclease family protein 	LOC_Os05g46270.1	"FEN1A - Putative flap endonuclease protein, expressed"	Medtr1g103250.1	"Helix-hairpin-helix motif, class 2 "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0004518|nuclease activity	NA
PtpAffx.37038.1.A1_at	A	A1TS	POPTR_0005s23600	POPTR_0005s23600 (11)	scaffold_5:22325029-22325232(+) (11)	NA	Q8GY55	Protein TIFY 4B	AT4G14720.1	TIFY domain/Divergent CCT motif family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37038.2.S1_s_at	A	A1TS	POPTR_0005s23600	POPTR_0005s23600 (11)	scaffold_5:22320964-22321634(+) (11)	NA	Q8GY55	Protein TIFY 4B	AT4G14720.1	TIFY domain/Divergent CCT motif family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3704.1.S1_at	A	A1TS	POPTR_0016s12760	POPTR_0016s12760 (11)	scaffold_16:12139370-12140195(+) (11)	POPTR_0006s10340 (6)	A2XFI3	Pyruvate decarboxylase isozyme 2	AT4G33070.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr3g166930.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.37055.1.A1_s_at	A	A1TS	POPTR_0003s10090	POPTR_0003s10090 (9)	scaffold_3:11201187-11201873(-) (11)	NA	Q6Z8C8	Cyclin-dependent kinase F-4	AT4G19110.1	Protein kinase superfamily protein 	LOC_Os06g02550.2	"CPuORF21 - conserved peptide uORF-containing transcript, expressed"	Medtr5g027190.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37055.2.A1_at	A	A1MS	POPTR_0003s10090	POPTR_0003s10090 (10)	scaffold_3:11201584-11201695(-) (10)	NA	Q6Z8C8	Cyclin-dependent kinase F-4	AT4G19110.1	Protein kinase superfamily protein 	LOC_Os06g02550.2	"CPuORF21 - conserved peptide uORF-containing transcript, expressed"	Medtr5g027190.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37056.1.A1_s_at	A	A1TS	POPTR_0001s15490	POPTR_0001s15490 (11)	scaffold_1:12306143-12306413(-) (11)	NA	P46601	Homeobox-leucine zipper protein HAT2	AT5G47370.1	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein 	LOC_Os10g41230.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.37066.1.A1_at	A	A1MA	POPTR_0009s05910	POPTR_0009s05910 (10)	scaffold_9:5860925-5861124(-) (10)	NA	O16810	Origin recognition complex subunit 1	AT4G14700.1	origin recognition complex 1 	LOC_Os06g08790.1	"ORC1 - Putative origin recognition complex subunit 1, expressed"	NA	NA	NA	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.37067.1.A1_s_at	A	A1TS	POPTR_0002s08130	POPTR_0002s08130 (11)	scaffold_2:5622873-5624651(+) (11)	NA	Q9XI05	Proteasome subunit beta type-3-A	AT1G21720.1	proteasome beta subunit C1 	LOC_Os06g43570.1	"peptidase, T1 family, putative, expressed"	Medtr7g105310.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.3707.1.S1_s_at	A	A3TS	POPTR_0017s07620	POPTR_0017s07630 (11)//POPTR_0017s07620 (11)//POPTR_0017s07600 (10)	scaffold_17:5912798-5913067(-) (10)//scaffold_17:5924935-5925207(-) (11)//scaffold_17:5936478-5936748(-) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g37456.2	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr5g074190.1	"Peptidase aspartic, active site; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.3707.2.S1_a_at	A	A3TS	POPTR_0017s07600	POPTR_0017s07630 (9)//POPTR_0017s07620 (9)//POPTR_0017s07600 (9)	scaffold_17:5912476-5912508(-) (9)//scaffold_17:5924616-5924648(-) (9)//scaffold_17:5936157-5936189(-) (9)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g37456.2	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr4g120970.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.3707.2.S1_s_at	A	A2TS	POPTR_0017s07620	POPTR_0017s07630 (11)//POPTR_0017s07620 (11)	scaffold_17:5924727-5924887(-) (11)//scaffold_17:5936268-5936430(-) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g37456.2	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr5g074190.1	"Peptidase aspartic, active site; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.37081.1.A1_at	A	A1TS	POPTR_0011s04620	POPTR_0011s04620 (11)	scaffold_11:4579878-4580363(+) (11)	NA	Q9FIY7	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3	AT1G61140.3	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related 	LOC_Os01g57110.2	"SNF2 family N-terminal domain containing protein, expressed"	Medtr2g014500.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.37093.1.A1_at	A	A1TS	POPTR_0006s07980	POPTR_0006s07980 (11)	scaffold_6:5836400-5836634(-) (11)	NA	A6MVV9	Chloroplast envelope membrane protein	AT4G31040.1	CemA-like proton extrusion protein-related 	LOC_Os08g12780.4	"chloroplast envelope membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.37096.1.A1_at	A	A1TS	POPTR_0013s15590	POPTR_0013s15590 (10)	scaffold_13:15520911-15521185(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37107.1.A1_at	A	A1TS	POPTR_0008s14630	POPTR_0008s14630 (9)	scaffold_8:9721925-9722623(+) (9)	NA	B2RY56	RNA-binding protein 25	AT1G60200.1	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 	LOC_Os08g32100.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr5g035770.1	"Splicing factor PWI; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.3711.1.S1_at	A	A1TS	POPTR_0009s01320	POPTR_0009s01320 (11)	scaffold_9:1590159-1590261(+) (11)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.37111.1.A1_at	A	A1TS	POPTR_0004s21490	POPTR_0004s21490 (11)	scaffold_4:20600193-20600490(+) (11)	NA	Q681N2	U-box domain-containing protein 15	AT5G42340.1	Plant U-Box 15 	LOC_Os08g37570.1	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.37113.1.A1_at	A	A1TS	POPTR_0002s11440	POPTR_0002s11440 (11)	scaffold_2:8480291-8480834(+) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G65790.1	myb domain protein 68 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37131.1.A1_at	A	A1TS	POPTR_0013s13510	POPTR_0013s13510 (11)	scaffold_13:13969904-13970371(-) (11)	NA	NA	NA	AT4G28300.1	Protein of unknown function (DUF1421) 	LOC_Os01g55050.2	"protein of unknown function DUF1421 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37134.1.A1_at	A	A1TS	POPTR_0001s00380	POPTR_0001s00380 (11)	scaffold_1:259024-259224(-) (11)	NA	NA	NA	AT4G22560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 380 Blast hits to 380 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g44280.1	"zinc finger protein, putative"	Medtr5g012350.1	"AT1G62520, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37135.1.A1_at	A	A1TS	POPTR_0003s10560	POPTR_0003s10560 (9)	scaffold_3:11495667-11495816(-) (9)//scaffold_975:6758-6907(-) (11)	POPTR_0975s00210 (7)	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT1G31650.1	RHO guanyl-nucleotide exchange factor 14 	LOC_Os02g47420.3	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr5g026080.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.37138.1.S1_s_at	A	A1TS	POPTR_0002s03140	POPTR_0002s03140 (11)	scaffold_2:1946608-1946743(+) (11)	NA	Q43636	Thioredoxin H-type	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr5g021080.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.37138.2.S1_at	A	A1MS	POPTR_0002s03140	POPTR_0002s03140 (10)	scaffold_2:1946260-1946532(+) (10)	NA	Q43636	Thioredoxin H-type	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr5g021080.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.37162.1.A1_at	A	A1TA	POPTR_0002s03160	POPTR_0002s03160 (11)	scaffold_2:1955681-1956164(-) (11)	NA	Q9FXH1	Pentatricopeptide repeat-containing protein At1g19720	AT1G19720.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os03g59264.1	"calreticulin family protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37179.1.S1_s_at	A	A2TS	POPTR_0011s01120	POPTR_0011s02030 (11)//POPTR_0011s01120 (11)	scaffold_11:629139-629921(+) (11)//scaffold_11:1644463-1645246(-) (11)//scaffold_11:1690660-1691438(-) (11)	POPTR_0011s01990 (8)	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3718.1.A1_at	A	A1TS	POPTR_0019s00830	POPTR_0019s00830 (11)	scaffold_19:559185-560438(+) (11)	POPTR_0004s14590 (6)	P25406	Alcohol dehydrogenase 1B	AT5G63620.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os08g01760.1	"dehydrogenase, putative, expressed"	Medtr4g144410.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.3719.1.S1_at	A	A1TS	POPTR_0014s04340	POPTR_0014s04340 (11)	scaffold_14:3400781-3401177(-) (11)	NA	Q9LPF6	Probable purine permease 11	AT1G44750.2	purine permease 11 	LOC_Os02g46380.2	"purine permease, putative, expressed"	Medtr7g092280.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37238.1.A1_at	A	A1TS	POPTR_0015s08280	POPTR_0015s08280 (11)	scaffold_15:9550660-9551374(+) (11)	NA	Q9SXC9	Probable alpha-mannosidase I MNS5	AT1G27520.1	Glycosyl hydrolase family 47 protein 	LOC_Os02g50780.1	"glycosyl hydrolase family 47 domain contain protein, expressed"	Medtr8g125210.1	"Glycoside hydrolase, family 47 "	NA	"GO:0004571|""mannosyl-oligosaccharide 1,2-alpha-mannosidase activity""||GO:0005509|calcium ion binding"	GO:0016020|membrane
PtpAffx.3724.1.A1_at	A	A1TS	POPTR_0013s00730	POPTR_0013s00730 (11)	scaffold_13:362413-362822(-) (11)	NA	O15488	Glycogenin-2	AT1G56600.1	galactinol synthase 2 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.3724.1.A1_s_at	A	A1TS	POPTR_0013s00730	POPTR_0013s00730 (11)	scaffold_13:362508-362746(-) (11)	NA	O15488	Glycogenin-2	AT1G56600.1	galactinol synthase 2 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.37257.1.A1_a_at	A	A1TS	POPTR_0005s16580	POPTR_0005s16580 (11)	scaffold_5:13457588-13457915(-) (11)	NA	NA	NA	AT1G22160.1	Protein of unknown function (DUF581) 	LOC_Os09g20240.1	"DUF581 domain containing protein, expressed"	CU651566_1.1	Protein of unknown function DUF581 CU651566.9 6700-5475 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37257.1.A1_at	A	A1TS	POPTR_0005s16580	POPTR_0005s16580 (11)	scaffold_5:13457612-13458450(-) (11)	NA	NA	NA	AT1G22160.1	Protein of unknown function (DUF581) 	LOC_Os09g20240.1	"DUF581 domain containing protein, expressed"	CU651566_1.1	Protein of unknown function DUF581 CU651566.9 6700-5475 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37259.1.A1_a_at	A	A1TS	POPTR_0013s08320	POPTR_0013s08320 (10)	scaffold_13:7396646-7397133(+) (10)	NA	NA	NA	AT1G65230.1	Uncharacterized conserved protein (DUF2358) 	LOC_Os01g68450.1	expressed protein	Medtr7g089860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37260.1.S1_at	A	A1TS	POPTR_0018s06080	POPTR_0018s06080 (10)	scaffold_18:5744323-5744748(-) (10)	NA	Q9LV58	Multiprotein-bridging factor 1c	AT3G24500.1	multiprotein bridging factor 1C 	LOC_Os06g39240.1	"endothelial differentiation-related factor 1, putative, expressed"	Medtr6g101930.2	Helix-turn-helix motif 	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.37277.1.A1_at	A	A1TS	POPTR_0001s04600	POPTR_0001s04600 (9)	scaffold_1:3583500-3583922(+) (11)	NA	NA	NA	AT1G11880.1	"transferases, transferring hexosyl groups "	LOC_Os12g31480.1	"GPI mannosyltransferase 2, putative, expressed"	Medtr4g114500.1	Protein of unknown function DUF409 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37281.1.A1_at	A	A1TS	POPTR_0016s10010	POPTR_0016s10010 (11)	scaffold_16:8139790-8139983(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22380.1	UDP-glucosyl transferase 85A3 	LOC_Os07g30330.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g033170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37283.1.S1_at	A	A1TS	POPTR_0013s05110	POPTR_0013s05110 (9)	scaffold_13:3622201-3622663(+) (9)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G18270.1	Arabidopsis NAC domain containing protein 87 	LOC_Os03g21030.1	"no apical meristem protein, putative, expressed"	Medtr7g100140.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.37284.2.A1_a_at	A	A1TS	POPTR_0001s05980	POPTR_0001s05980 (11)	scaffold_1:4688308-4688640(-) (11)	NA	NA	NA	AT4G31560.1	high chlorophyll fluorescence 153 	NA	NA	Medtr3g026180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37287.1.A1_at	A	A1TS	POPTR_0015s14000	POPTR_0015s14000 (11)	scaffold_15:13746645-13747323(-) (11)	NA	Q0JGZ6	Fructokinase-1	AT5G51830.1	pfkB-like carbohydrate kinase family protein 	LOC_Os06g12600.1	"kinase, pfkB family, putative, expressed"	Medtr6g096500.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37291.1.A1_at	A	A1TS	POPTR_0001s06420	POPTR_0001s06420 (11)	scaffold_1:4918429-4918884(-) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G19420.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os05g31920.2	"FYVE zinc finger domain containing protein, expressed"	Medtr5g096940.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37292.1.A1_at	A	A1TS	POPTR_0010s25010	POPTR_0010s25010 (11)	scaffold_10:20903423-20904682(+) (11)	NA	Q7SYN4	Cytosolic 5'-nucleotidase 3	AT2G38680.1	5'-nucleotidases;magnesium ion binding 	LOC_Os03g44660.1	"cytosolic 5-nucleotidase III, putative, expressed"	Medtr1g112120.1	HAD-superfamily subfamily IE hydrolase 	NA	GO:0008253|5'-nucleotidase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
PtpAffx.37297.1.A1_at	A	A1TS	POPTR_0015s08530	POPTR_0015s08530 (11)	scaffold_15:9790402-9790715(-) (11)	NA	Q9LRA7	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9"	AT1G23870.1	trehalose-phosphatase/synthase 9 	LOC_Os08g31980.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g110050.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.37302.1.A1_at	A	A1TS	POPTR_0017s02500	POPTR_0017s02500 (10)	scaffold_17:1811279-1811362(+) (10)	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g026270.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.37303.1.A1_at	A	A1TS	POPTR_0002s08570	POPTR_0002s08570 (9)	scaffold_2:5993121-5995319(-) (10)	NA	NA	NA	AT4G08280.1	Thioredoxin superfamily protein 	LOC_Os02g52900.2	"glutaredoxin 2, putative, expressed"	Medtr3g097660.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37308.1.A1_at	A	A1TS	POPTR_0005s27380	POPTR_0005s27380 (11)	scaffold_5:25084814-25085165(-) (11)	NA	NA	NA	AT4G02210.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). 	LOC_Os03g53590.2	expressed protein	Medtr7g047430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37311.1.A1_at	A	A1TS	POPTR_0015s05820	POPTR_0015s05820 (11)	scaffold_15:6159067-6159548(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35590.1	"reticuline oxidase-like protein precursor, putative, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.37313.1.A1_at	A	A1TS	POPTR_0010s06450	POPTR_0010s06450 (11)	scaffold_10:7810925-7813093(-) (11)	NA	Q9LU89	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os04g40860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.37317.1.A1_a_at	A	A1TS	POPTR_0019s14520	POPTR_0019s14520 (11)	scaffold_19:15291348-15292116(-) (11)	NA	O60749	Sorting nexin-2	AT5G07120.1	sorting nexin 2B 	LOC_Os05g27920.1	"phox domain-containing protein, putative, expressed"	Medtr5g081470.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.37317.2.A1_a_at	A	A1TS	POPTR_0019s14520	POPTR_0019s14520 (11)	scaffold_19:15291377-15292121(-) (11)	NA	O60749	Sorting nexin-2	AT5G07120.1	sorting nexin 2B 	LOC_Os05g27920.1	"phox domain-containing protein, putative, expressed"	Medtr5g081470.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.37318.1.A1_at	A	A1TS	POPTR_0001s45500	POPTR_0001s45500 (11)	scaffold_1:46018270-46018784(-) (11)	NA	NA	NA	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os04g49160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3732.1.A1_s_at	A	A1TS	POPTR_0016s03770	POPTR_0016s03770 (10)	scaffold_16:2113381-2114489(-) (10)	NA	P53780	"Cystathionine beta-lyase, chloroplastic"	AT3G57050.1	cystathionine beta-lyase 	LOC_Os06g07960.1	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.37321.1.A1_at	A	A1TS	POPTR_0005s14410	POPTR_0005s14410 (11)	scaffold_5:11455480-11457092(-) (11)	NA	Q9M1B9	Probable fructokinase-4	AT1G66430.1	pfkB-like carbohydrate kinase family protein 	LOC_Os06g12600.1	"kinase, pfkB family, putative, expressed"	Medtr5g086910.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37324.1.A1_s_at	A	A1TS	POPTR_0003s06190	POPTR_0003s06190 (11)	scaffold_3:7636897-7637076(+) (11)	NA	Q8GYL9	Protein Brevis radix-like 2	AT3G14000.2	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37327.1.A1_at	A	A1MS	POPTR_0008s12960	POPTR_0008s12960 (10)	scaffold_8:8457845-8458146(+) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G01480.1	O-fucosyltransferase family protein 	LOC_Os05g38490.1	"growth regulator related protein, putative"	Medtr1g034900.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37332.1.A1_at	A	A1TS	POPTR_0008s02490	POPTR_0008s02490 (11)	scaffold_8:1219460-1219794(-) (11)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os03g06340.1	"XS domain containing protein, expressed"	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37334.1.A1_s_at	A	A1TS	POPTR_0005s10990	POPTR_0005s10990 (11)	scaffold_5:7908488-7908790(-) (11)	POPTR_0007s09260 (8)	Q42560	Aconitate hydratase 1	AT4G35830.1	aconitase 1 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr5g022930.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.37336.1.A1_at	A	A1TS	POPTR_0006s23100	POPTR_0006s23100 (11)	scaffold_6:21955146-21955577(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G12360.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3734.1.A1_s_at	A	A1TS	POPTR_0010s10860	POPTR_0010s10860 (11)	scaffold_10:11258548-11259585(-) (11)	NA	Q9C5U3	26S protease regulatory subunit 8 homolog A	AT5G19990.1	regulatory particle triple-A ATPase 6A 	LOC_Os02g11050.1	"26S protease regulatory subunit, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.3734.2.A1_a_at	A	A1TS	POPTR_0008s14310	POPTR_0008s14310 (10)	scaffold_8:9488414-9488509(+) (10)	NA	Q9C5U3	26S protease regulatory subunit 8 homolog A	AT5G19990.1	regulatory particle triple-A ATPase 6A 	LOC_Os02g11050.1	"26S protease regulatory subunit, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.3734.2.A1_at	A	A1TS	POPTR_0008s14310	POPTR_0008s14310 (9)	scaffold_8:9488537-9488707(+) (9)	NA	Q9C5U3	26S protease regulatory subunit 8 homolog A	AT5G19990.1	regulatory particle triple-A ATPase 6A 	LOC_Os02g11050.1	"26S protease regulatory subunit, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.3734.3.A1_at	A	A1MS	POPTR_0008s14310	POPTR_0008s14310 (9)	scaffold_8:9488067-9488174(+) (9)	NA	Q9C5U3	26S protease regulatory subunit 8 homolog A	AT5G19990.1	regulatory particle triple-A ATPase 6A 	LOC_Os02g11050.1	"26S protease regulatory subunit, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.37342.1.S1_at	A	A1TS	POPTR_0018s05280	POPTR_0018s05280 (11)	scaffold_18:4796757-4797381(-) (11)	POPTR_0006s24410 (6)	Q9FFH3	Zinc finger protein NUTCRACKER	AT1G55110.1	indeterminate(ID)-domain 7 	LOC_Os01g09850.3	"ZOS1-04 - C2H2 zinc finger protein, expressed"	Medtr8g018830.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.37347.1.A1_at	A	A1TS	POPTR_0005s01760	POPTR_0005s01760 (11)	scaffold_5:1186809-1187703(+) (11)	NA	P93655	"Lon protease homolog 1, mitochondrial"	AT5G26860.1	lon protease 1 	LOC_Os07g48960.1	"OsLonP3 - Putative Lon protease homologue, expressed"	Medtr1g100550.1	"AAA ATPase, central region "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004176|ATP-dependent peptidase activity||GO:0004252|serine-type endopeptidase activity||GO:0005524|ATP binding	NA
PtpAffx.37355.1.A1_at	A	A1TS	POPTR_0012s07550	POPTR_0012s07550 (11)	scaffold_12:8469794-8471775(+) (11)	NA	Q39030	Serine/threonine-protein kinase AtPK2/AtPK19	AT3G08720.2	serine/threonine protein kinase 2 	LOC_Os03g21620.1	"AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.3736.1.S1_at	A	A3TS	POPTR_0002s18400	POPTR_0002s18400 (10)//POPTR_0014s10470 (9)//POPTR_0002s18380 (9)	scaffold_14:7814672-7814990(-) (9)//scaffold_2:14332230-14334727(-) (11)//scaffold_2:14345043-14346589(-) (10)	NA	Q9FMK9	Probable inactive purple acid phosphatase 29	AT5G63140.1	purple acid phosphatase 29 	LOC_Os09g36290.2	"Ser/Thr protein phosphatase family protein, putative, expressed"	AC233657_16.1	Phosphoesterase At2g46880 AC233657.1 80256-78038 F EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.37360.1.A1_s_at	A	A1TS	POPTR_0006s20590	POPTR_0006s20590 (11)	scaffold_6:19610142-19610611(-) (11)	NA	NA	NA	AT1G20970.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os08g40250.1	expressed protein	Medtr1g039770.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37364.1.A1_at	A	A1TS	POPTR_0001s14770	POPTR_0001s14770 (11)	scaffold_1:11629445-11630236(+) (11)	NA	Q8W487	"Uncharacterized protein At2g39795, mitochondrial"	AT1G15870.1	Mitochondrial glycoprotein family protein 	LOC_Os08g34130.1	"mitochondrial glycoprotein, putative, expressed"	Medtr4g022510.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
PtpAffx.37378.1.A1_at	A	A1TS	POPTR_0005s18830	POPTR_0005s18830 (11)	scaffold_5:17148828-17149352(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3738.1.A1_s_at	A	A1MS	POPTR_0003s14750	POPTR_0003s14750 (11)	scaffold_3:14748952-14749172(+) (11)	NA	Q8BUV8	Protein GPR107	AT5G42090.1	Lung seven transmembrane receptor family protein 	LOC_Os06g04130.2	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr3g109390.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.37380.1.S1_at	A	A1TS	POPTR_0014s07800	POPTR_0014s07800 (11)	scaffold_14:5830629-5831252(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37384.1.A1_at	A	A1TS	POPTR_0014s01820	POPTR_0014s01820 (10)	scaffold_14:1685655-1686031(+) (10)	NA	NA	NA	AT2G26680.1	CONTAINS InterPro DOMAIN/s: Methyltransferase FkbM (InterPro:IPR006342); Has 1073 Blast hits to 1073 proteins in 243 species: Archae - 45; Bacteria - 509; Metazoa - 0; Fungi - 4; Plants - 60; Viruses - 4; Other Eukaryotes - 451 (source: NCBI BLink). 	LOC_Os03g36910.1	"SAM-dependent methyltransferase, putative, expressed"	Medtr8g120240.1	Methyltransferase FkbM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37388.2.S1_s_at	A	A1TS	POPTR_0002s24800	POPTR_0002s24800 (11)	scaffold_2:22055043-22056263(-) (11)	NA	O94260	Putative G3BP-like protein	AT3G25150.2	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os04g30430.1	"nuclear transport factor 2, putative, expressed"	Medtr7g062040.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.374.1.S1_at	A	A1TS	POPTR_0011s13360	POPTR_0011s13360 (11)	scaffold_11:16128867-16129419(+) (11)	NA	NA	NA	AT5G54540.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os08g08190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.374.3.A1_a_at	A	A1TS	POPTR_0004s11110	POPTR_0004s11110 (11)	scaffold_4:9706831-9707151(+) (11)	NA	P48724	Eukaryotic translation initiation factor 5	AT1G77840.1	Translation initiation factor IF2/IF5 	LOC_Os06g48355.1	expressed protein	Medtr7g094130.1	Translation initiation factor IF5; eIF4-gamma/eIF5/eIF2-epsilon 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.374.8.S1_a_at	A	A1TS	POPTR_0014s04470	POPTR_0014s04470 (11)	scaffold_14:3472289-3474126(-) (11)	NA	NA	NA	AT4G01710.1	ARP2/3 complex 16 kDa subunit (p16-Arc) 	LOC_Os11g35360.1	"actin polymerization factor, putative, expressed"	NA	NA	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.37401.1.A1_at	A	A1TS	POPTR_0001s11960	POPTR_0001s11960 (11)	scaffold_1:9299402-9299530(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.37401.1.A1_s_at	A	A2TS	POPTR_0001s11960	POPTR_0001s15030 (11)//POPTR_0001s11960 (11)	scaffold_1:9299219-9299394(+) (11)//scaffold_1:11865779-11865954(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.37405.1.S1_at	A	A1TS	POPTR_0016s06270	POPTR_0016s06270 (11)	scaffold_16:4213980-4215080(-) (11)	NA	Q17MI0	Mediator of RNA polymerase II transcription subunit 7	AT5G03500.3	"Mediator complex, subunit Med7 "	LOC_Os04g56640.3	"mediator of RNA polymerase II transcription subunit 7, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.37406.1.S1_at	A	A1TS	POPTR_0010s21230	POPTR_0010s21230 (11)	scaffold_10:18586142-18587433(-) (11)	NA	B9NBE5	UPF0497 membrane protein 11	AT2G39530.1	Uncharacterised protein family (UPF0497) 	NA	NA	Medtr7g025920.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37407.1.A1_at	A	A1TS	POPTR_0016s08700	POPTR_0016s08700 (11)	scaffold_16:6490029-6490269(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g120900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37413.1.A1_at	A	A1TS	POPTR_0012s07910	POPTR_0012s07910 (11)	scaffold_12:8907892-8908412(+) (11)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50840.2	"BAH domain containing protein, putative, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.37444.1.S1_s_at	A	A1TS	POPTR_0006s02230	POPTR_0006s02230 (11)	scaffold_6:1464650-1464955(-) (11)	NA	Q05462	60S ribosomal protein L27	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os10g41470.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.37445.1.A1_at	A	A1TS	POPTR_0014s13300	POPTR_0014s13300 (11)	scaffold_14:9801231-9801517(+) (11)	NA	NA	NA	AT3G63030.1	methyl-CPG-binding domain 4 	LOC_Os05g33550.1	"methyl-binding domain protein MBD, putative, expressed"	Medtr1g111540.1	"Thymidine kinase; Methyl-CpG binding; Zinc finger, CW-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.37449.1.A1_a_at	A	A1TS	POPTR_0010s12600	POPTR_0010s12600 (11)	scaffold_10:12590298-12591598(-) (11)	NA	Q9ZU40	Sulfhydryl oxidase 2	AT2G01270.1	quiescin-sulfhydryl oxidase 2 	LOC_Os05g47930.3	"OsQSOXL1  quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed"	Medtr1g137690.1	Erv1/Alr; Thioredoxin fold 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016972|thiol oxidase activity	NA
PtpAffx.3745.1.S1_at	A	A1TS	POPTR_0003s22310	POPTR_0003s22310 (11)	scaffold_3:20140453-20140877(+) (11)	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT3G20820.1	Leucine-rich repeat (LRR) family protein 	LOC_Os08g39550.1	"polygalacturonase inhibitor 2 precursor, putative, expressed"	Medtr2g117790.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.3745.2.S1_a_at	A	A2TS	POPTR_0001s05520	POPTR_0003s22310 (11)//POPTR_0001s05520 (11)	scaffold_1:4243004-4243041(+) (11)//scaffold_3:20140344-20140381(+) (11)	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT3G20820.1	Leucine-rich repeat (LRR) family protein 	LOC_Os08g39550.1	"polygalacturonase inhibitor 2 precursor, putative, expressed"	Medtr2g117790.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.3745.2.S1_at	A	A1TS	POPTR_0001s05520	POPTR_0001s05520 (11)	scaffold_1:4243101-4243406(+) (11)	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT3G20820.1	Leucine-rich repeat (LRR) family protein 	LOC_Os08g39550.1	"polygalacturonase inhibitor 2 precursor, putative, expressed"	Medtr2g117790.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.37456.2.S1_a_at	A	A1TS	POPTR_0019s07630	POPTR_0019s07630 (11)	scaffold_19:8722284-8726663(+) (11)	NA	Q3EAR7	Probable glycosyltransferase At3g42180	AT5G16890.1	Exostosin family protein 	LOC_Os01g59630.1	"exostosin family domain containing protein, expressed"	Medtr4g107310.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.37458.1.A1_at	A	A1TS	POPTR_0001s12960	POPTR_0001s12960 (11)	scaffold_1:10053223-10053292(-) (11)	NA	P51132	"Cytochrome b-c1 complex subunit Rieske-2, mitochondrial"	AT5G13430.1	Ubiquinol-cytochrome C reductase iron-sulfur subunit 	LOC_Os02g32120.1	"cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed"	Medtr7g097200.1	Ubiquinol cytochrome reductase transmembrane region; Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0008121|ubiquinol-cytochrome-c reductase activity||GO:0009055|electron carrier activity||GO:0051537|""2 iron, 2 sulfur cluster binding"""	NA
PtpAffx.37459.1.S1_at	A	A1TS	POPTR_0002s04440	POPTR_0002s04440 (11)	scaffold_2:2785297-2785845(-) (11)	NA	O04336	Probable WRKY transcription factor 21	AT2G30590.1	WRKY DNA-binding protein 21 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr1g010400.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.37459.2.S1_at	A	A1TS	POPTR_0005s24100	POPTR_0005s24100 (10)	scaffold_5:22746339-22746467(+) (10)	NA	O04336	Probable WRKY transcription factor 21	AT2G30590.1	WRKY DNA-binding protein 21 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr1g010400.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.37459.3.S1_a_at	A	A1TS	POPTR_0005s24100	POPTR_0005s24100 (11)	scaffold_5:22746555-22746644(+) (11)	NA	O04336	Probable WRKY transcription factor 21	AT2G30590.1	WRKY DNA-binding protein 21 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr1g010400.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.37463.1.A1_at	A	A1MS	POPTR_0010s11050	POPTR_0010s11050 (11)	scaffold_10:11430508-11431044(-) (11)	NA	P46032	Peptide transporter PTR2	AT2G02040.1	peptide transporter 2 	LOC_Os03g51050.1	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.3747.1.S1_at	A	A1TS	POPTR_0011s11350	POPTR_0011s11350 (11)	scaffold_11:14075184-14075512(+) (11)	NA	Q9LKA5	"Uncharacterized protein At3g15000, mitochondrial"	AT3G15000.1	cobalt ion binding 	LOC_Os09g33480.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3747.3.A1_s_at	A	A1TS	POPTR_0011s17020	POPTR_0011s17020 (11)	scaffold_11:18683273-18683677(+) (11)	NA	Q38967	Amino acid permease 2	AT5G09220.1	amino acid permease 2 	LOC_Os04g39489.1	"amino acid transporter, putative, expressed"	CU013523_1.1	"Amino acid transporter, transmembrane CU013523.3 15682-12598 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3747.4.A1_a_at	A	A1MS	POPTR_0001s40390	POPTR_0001s40390 (11)	scaffold_1:39800604-39801001(+) (11)	NA	Q9LKA5	"Uncharacterized protein At3g15000, mitochondrial"	AT3G15000.1	cobalt ion binding 	LOC_Os09g33480.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37498.1.A1_s_at	A	A1TS	POPTR_0002s07790	POPTR_0002s07790 (11)	scaffold_2:5335726-5335905(-) (11)	NA	Q9C5I1	UDP-sugar pyrophosphorylase	AT5G52560.1	UDP-sugar pyrophosphorylase 	LOC_Os06g48760.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37502.1.S1_at	A	A1TS	POPTR_0007s00240	POPTR_0007s00240 (11)	scaffold_7:44609-44980(+) (11)	NA	O49621	MLO-like protein 1	AT4G02600.2	Seven transmembrane MLO family protein 	LOC_Os05g34550.1	"MLO domain containing protein, putative, expressed"	Medtr3g163760.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.37519.1.A1_at	A	A1MS	POPTR_0005s12390	POPTR_0005s12390 (11)	scaffold_5:9156317-9156383(+) (11)	NA	NA	NA	AT1G75250.1	RAD-like 6 	LOC_Os01g44390.2	"MYB family transcription factor, putative, expressed"	Medtr3g162290.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37524.1.S1_at	A	A1TS	POPTR_0002s19950	POPTR_0002s19950 (11)	scaffold_2:15882309-15882666(-) (11)	NA	NA	NA	AT2G25920.1	BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (TAIR:AT2G25910.2); Has 131 Blast hits to 125 proteins in 54 species: Archae - 0; Bacteria - 50; Metazoa - 12; Fungi - 12; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). 	LOC_Os05g06420.1	expressed protein	Medtr1g107460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37524.2.S1_a_at	A	A2TS	POPTR_0002s19950	POPTR_0002s19950 (11)//POPTR_0014s11800 (10)	scaffold_14:8757296-8757342(-) (10)//scaffold_2:15882751-15882959(-) (11)	NA	NA	NA	AT2G25920.1	BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (TAIR:AT2G25910.2); Has 131 Blast hits to 125 proteins in 54 species: Archae - 0; Bacteria - 50; Metazoa - 12; Fungi - 12; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). 	LOC_Os05g06420.1	expressed protein	Medtr1g107460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3753.1.S1_at	A	A1TS	POPTR_0006s03320	POPTR_0006s03320 (11)	scaffold_6:2115416-2116172(+) (11)	NA	NA	NA	AT3G56680.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr7g105960.1	Single-stranded nucleic acid binding R3H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37534.1.S1_s_at	A	A1TS	POPTR_0018s02930	POPTR_0018s02930 (11)	scaffold_18:2545773-2546444(-) (11)	NA	Q94K01	Lariat debranching enzyme	AT4G31770.1	debranching enzyme 1 	LOC_Os03g51540.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr3g138550.1	"Metallophosphoesterase; Lariat debranching enzyme, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.3754.2.S1_a_at	A	A2TS	POPTR_0001s31840	POPTR_0017s07760 (11)//POPTR_0001s31840 (11)	scaffold_1:30188642-30188788(-) (11)//scaffold_17:6033726-6033872(-) (11)	NA	O57683	Splicing factor 3B subunit 1	AT5G64270.1	"splicing factor, putative "	LOC_Os02g05310.4	"splicing factor 3B subunit 1, putative, expressed"	Medtr2g009180.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3754.2.S1_at	A	A1TS	POPTR_0001s31840	POPTR_0001s31840 (11)	scaffold_1:30188273-30188690(-) (11)	NA	O57683	Splicing factor 3B subunit 1	AT5G64270.1	"splicing factor, putative "	LOC_Os02g05310.4	"splicing factor 3B subunit 1, putative, expressed"	Medtr2g009180.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37541.1.A1_s_at	A	A1TS	POPTR_0014s04280	POPTR_0014s04280 (11)	scaffold_14:3349853-3352124(-) (11)	NA	O04905	Uridylate kinase	AT5G26667.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53790.1	"adenylate kinase, putative, expressed"	Medtr8g009290.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0019205|""nucleobase, nucleoside, nucleotide kinase activity""||GO:0005524|ATP binding"	NA
PtpAffx.37541.3.A1_at	A	A1TS	POPTR_0002s13570	POPTR_0002s13570 (11)	scaffold_2:10064370-10064413(-) (11)	NA	O04905	Uridylate kinase	AT5G26667.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53790.1	"adenylate kinase, putative, expressed"	Medtr8g009290.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0019205|""nucleobase, nucleoside, nucleotide kinase activity""||GO:0005524|ATP binding"	NA
PtpAffx.37552.1.S1_at	A	A3TS	POPTR_0082s00210	POPTR_0082s00210 (11)//POPTR_0008s22230 (9)//POPTR_0008s22190 (9)	scaffold_8:16609266-16609942(-) (9)//scaffold_8:16633035-16633711(-) (9)//scaffold_82:48766-49504(-) (11)	NA	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3757.3.A1_a_at	A	A1TS	POPTR_0002s01780	POPTR_0002s01780 (11)	scaffold_2:956115-956688(+) (11)	NA	Q39227	24-methylenesterol C-methyltransferase 2	AT1G20330.1	sterol methyltransferase 2 	LOC_Os03g04340.1	"C-methyltransferase, putative, expressed"	Medtr3g157340.1	Methyltransferase type 11 	GO:0006694|steroid biosynthetic process	GO:0008168|methyltransferase activity	NA
PtpAffx.37570.1.A1_s_at	A	A1TS	POPTR_0008s16470	POPTR_0008s16470 (11)	scaffold_8:11050272-11050544(-) (11)	NA	Q6NN02	"Uncharacterized protein At4g14450, chloroplastic"	AT4G14450.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3758.1.S1_at	A	A1TS	POPTR_0004s18190	POPTR_0004s18190 (11)	scaffold_4:18168465-18169276(+) (11)	NA	P13443	Glycerate dehydrogenase	AT1G68010.1	hydroxypyruvate reductase 	LOC_Os02g01150.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.37581.1.A1_at	A	A1TS	POPTR_0004s10070	POPTR_0004s10070 (11)	scaffold_4:8613728-8618194(-) (11)	NA	Q9P2D3	HEAT repeat-containing protein 5B	AT1G67140.3	HEAT repeat-containing protein 	LOC_Os06g30901.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37581.1.A1_s_at	A	A1TS	POPTR_0004s10070	POPTR_0004s10070 (11)	scaffold_4:8613537-8615515(-) (11)	NA	Q9P2D3	HEAT repeat-containing protein 5B	AT1G67140.3	HEAT repeat-containing protein 	LOC_Os06g30901.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37583.1.A1_at	A	A1TS	POPTR_0001s47670	POPTR_0001s47670 (11)	scaffold_1:47818565-47819883(-) (11)	NA	Q9FG77	Probable WRKY transcription factor 2	AT5G56270.1	WRKY DNA-binding protein 2 	LOC_Os08g38990.4	"OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.37587.1.S1_a_at	A	A1TS	POPTR_0007s05430	POPTR_0007s05430 (11)	scaffold_7:3528980-3530995(+) (11)	NA	NA	NA	AT4G39900.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr3g101780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37587.3.S1_a_at	A	A1TS	POPTR_0007s05430	POPTR_0007s05430 (11)	scaffold_7:3526815-3528312(+) (11)	NA	NA	NA	AT4G39900.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr3g101780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37591.1.A1_at	A	A1TS	POPTR_0005s17020	POPTR_0005s17020 (11)	scaffold_5:14053801-14054480(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os03g27030.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.37591.4.A1_a_at	A	A1TS	POPTR_0005s17020	POPTR_0005s17020 (11)	scaffold_5:14054597-14054739(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os03g27030.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.37594.1.A1_at	A	A1TS	POPTR_0014s07950	POPTR_0014s07950 (11)	scaffold_14:5897475-5898577(-) (11)	NA	O65258	"Beta-amylase 2, chloroplastic"	AT4G00490.1	beta-amylase 2 	LOC_Os09g39570.1	"beta-amylase, putative, expressed"	Medtr5g026370.2	"Glycoside hydrolase, family 14; BZR1, transcriptional repressor; "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.37598.1.A1_at	A	A1TS	POPTR_0001s26190	POPTR_0001s26190 (11)	scaffold_1:25246727-25246975(-) (11)	NA	Q9LPS1	Hexokinase-3	AT1G50460.1	hexokinase-like 1 	LOC_Os01g71320.1	"hexokinase, putative, expressed"	Medtr5g009020.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.37600.1.S1_at	A	A1TS	POPTR_0001s10500	POPTR_0001s10500 (11)	scaffold_1:8149122-8150240(-) (11)	NA	Q499B3	Uncharacterized protein KIAA1310 homolog	AT5G41850.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g12330.1	"uncharacterized protein KIAA1310, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37603.1.A1_at	A	A1TS	POPTR_0010s24900	POPTR_0010s24900 (11)	scaffold_10:20857310-20857628(-) (11)	NA	NA	NA	AT5G04840.1	bZIP protein 	LOC_Os02g33560.1	expressed protein	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3761.2.S1_s_at	A	A1TS	POPTR_0010s16330	POPTR_0010s16330 (9)	scaffold_10:15295995-15296163(+) (9)	NA	A9PEK8	S-adenosylmethionine synthase 3	AT1G02500.2	S-adenosylmethionine synthetase 1 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.3761.4.S1_at	A	A1TS	POPTR_0008s20870	POPTR_0008s20870 (11)	scaffold_8:14887202-14887617(-) (11)	NA	Q8VYW2	Inactive beta-amylase 9	AT5G18670.1	beta-amylase 3 	LOC_Os07g47120.1	"beta-amylase, putative, expressed"	Medtr2g025350.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.37620.1.A1_at	A	A1TS	POPTR_0016s08380	POPTR_0016s08380 (11)	scaffold_16:6180463-6180970(-) (11)	NA	NA	NA	AT5G02770.1	unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). 	LOC_Os03g17490.2	expressed protein	AC235022_12.1	hypothetical protein AC235022.1 78747-76265 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37622.1.A1_a_at	A	A1TS	POPTR_0001s44470	POPTR_0001s44470 (11)	scaffold_1:44878132-44878427(-) (11)	NA	B3QLP5	Tetraacyldisaccharide 4'-kinase	AT3G20480.1	tetraacyldisaccharide 4'-kinase family protein 	LOC_Os07g01200.1	"tetraacyldisaccharide 4-kinase, putative, expressed"	Medtr3g069100.1	Tetraacyldisaccharide-1-P 4-kinase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0009245|lipid A biosynthetic process	GO:0009029|tetraacyldisaccharide 4'-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37622.2.A1_a_at	A	A1TS	POPTR_0001s44470	POPTR_0001s44470 (11)	scaffold_1:44878095-44878427(-) (11)	NA	B3QLP5	Tetraacyldisaccharide 4'-kinase	AT3G20480.1	tetraacyldisaccharide 4'-kinase family protein 	LOC_Os07g01200.1	"tetraacyldisaccharide 4-kinase, putative, expressed"	Medtr3g069100.1	Tetraacyldisaccharide-1-P 4-kinase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0009245|lipid A biosynthetic process	GO:0009029|tetraacyldisaccharide 4'-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37625.1.A1_at	A	A1TS	POPTR_0014s06190	POPTR_0014s06190 (11)	scaffold_14:4705667-4706405(-) (11)	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os10g40740.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.3763.1.S1_at	A	A1TS	POPTR_0002s05840	POPTR_0002s05840 (11)	scaffold_2:3842349-3843049(+) (11)	NA	P93836	4-hydroxyphenylpyruvate dioxygenase	AT1G06570.1	phytoene desaturation 1 	LOC_Os02g07160.1	"glyoxalase family protein, putative, expressed"	Medtr5g098270.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3763.2.S1_a_at	A	A1TS	POPTR_0002s05840	POPTR_0002s05840 (11)	scaffold_2:3841540-3842018(+) (11)	NA	P93836	4-hydroxyphenylpyruvate dioxygenase	AT1G06570.1	phytoene desaturation 1 	LOC_Os02g07160.1	"glyoxalase family protein, putative, expressed"	Medtr5g098270.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37637.1.A1_a_at	A	A1TS	POPTR_0012s01220	POPTR_0012s01220 (10)	scaffold_12:842259-842797(-) (10)	NA	NA	NA	AT5G53330.1	Ubiquitin-associated/translation elongation factor EF1B protein 	LOC_Os06g06530.1	"proline-rich cell wall protein-like, putative, expressed"	Medtr3g124790.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37663.1.S1_at	A	A1TS	POPTR_0019s04690	POPTR_0019s04690 (11)	scaffold_19:4885205-4885655(+) (11)	NA	O49255	NAC domain-containing protein 29	AT3G04070.1	NAC domain containing protein 47 	LOC_Os12g03040.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.37663.2.S1_a_at	A	A1TS	POPTR_0019s04690	POPTR_0019s04690 (11)	scaffold_19:4884087-4884648(+) (11)	NA	O49255	NAC domain-containing protein 29	AT3G04070.1	NAC domain containing protein 47 	LOC_Os12g03040.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.37666.1.S1_at	A	A1TS	POPTR_0015s00440	POPTR_0015s00440 (11)	scaffold_15:248290-248734(+) (11)	NA	Q6LA42	Two-component response regulator-like APRR5	AT5G24470.1	pseudo-response regulator 5 	LOC_Os09g36220.2	"response regulator receiver domain containing protein, expressed"	Medtr3g122660.2	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.37666.2.S1_a_at	A	A1TS	POPTR_0012s00600	POPTR_0012s00600 (10)	scaffold_12:298354-298628(+) (10)	NA	Q6LA42	Two-component response regulator-like APRR5	AT5G24470.1	pseudo-response regulator 5 	LOC_Os09g36220.2	"response regulator receiver domain containing protein, expressed"	Medtr3g122660.2	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.37674.1.A1_at	A	A3TS	POPTR_0011s13070	POPTR_0018s11990 (9)//POPTR_0011s13070 (9)//POPTR_0011s13090 (9)	scaffold_11:15787417-15787669(+) (9)//scaffold_11:15805495-15805747(+) (9)//scaffold_18:12627326-12627578(+) (9)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g053110.3	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37678.1.A1_at	A	A1MS	POPTR_0003s04720	POPTR_0003s04720 (9)	scaffold_3:5715013-5715533(+) (9)	NA	Q54J88	MMS19 nucleotide excision repair protein homolog	AT5G48120.1	ARM repeat superfamily protein 	LOC_Os07g08050.1	expressed protein	Medtr5g093260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37679.1.A1_a_at	A	A1TS	POPTR_0007s06550	POPTR_0007s06550 (10)	scaffold_7:4938560-4939217(+) (10)	NA	Q06801	"4-alpha-glucanotransferase, chloroplastic/amyloplastic"	AT5G64860.1	disproportionating enzyme 	LOC_Os07g43390.1	"4-alpha-glucanotransferase, chloroplast precursor, putative, expressed"	Medtr3g144850.1	"Glycoside hydrolase, family 77 "	GO:0005975|carbohydrate metabolic process	GO:0004134|4-alpha-glucanotransferase activity	NA
PtpAffx.3768.1.A1_at	A	A1TS	POPTR_0005s17520	POPTR_0005s17520 (11)	scaffold_5:15106248-15106692(+) (11)	NA	Q9FZ95	Purine permease 3	AT1G28220.1	purine permease 3 	LOC_Os09g29239.1	"purine permease, putative, expressed"	Medtr3g150070.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.37682.1.A1_at	A	A1TS	POPTR_0012s08650	POPTR_0012s08650 (11)	scaffold_12:9757156-9757332(-) (11)	NA	Q5N7W4	DEAD-box ATP-dependent RNA helicase 30	AT5G63120.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g68320.2	"DEAD-box ATP-dependent RNA helicase 30, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.37687.1.S1_at	A	A1TS	POPTR_0006s16320	POPTR_0006s16320 (11)	scaffold_6:14230482-14232102(-) (11)	NA	NA	NA	AT2G20120.1	Protein of unknown function (DUF502) 	LOC_Os05g45280.1	"protein of unknown function DUF502 domain containing protein, expressed"	Medtr4g158960.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37705.1.S1_at	A	A1TS	POPTR_0022s00510	POPTR_0022s00510 (10)	scaffold_22:198962-199461(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr2g005500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37713.1.A1_at	A	A1TS	POPTR_0002s19850	POPTR_0002s19850 (11)	scaffold_2:15772892-15773457(-) (11)	NA	O04251	BRCT domain-containing protein At4g02110	AT4G02110.1	transcription coactivators 	LOC_Os03g19190.1	"TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed"	Medtr1g107030.1	"BRCT; Zinc finger, FYVE/PHD-type "	NA	NA	GO:0005622|intracellular
PtpAffx.37714.2.A1_a_at	A	A1TS	POPTR_0016s15030	POPTR_0016s15030 (11)	scaffold_16:14074583-14078314(+) (11)	NA	NA	NA	AT5G01010.1	CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 172 Blast hits to 172 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os05g24020.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr8g005030.1	"Proteinase inhibitor I4, serpin; emp24/gp25L/p24 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3772.1.A1_at	A	A1TS	POPTR_0014s11540	POPTR_0014s11540 (9)	scaffold_14:8558965-8559356(-) (9)	NA	NA	NA	AT2G16760.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g19452.1	"SMP-30/Gluconolaconase/LRE domain protein, putative, expressed"	Medtr1g106660.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37724.1.A1_at	A	A1MS	POPTR_0015s10750	POPTR_0015s10750 (11)	scaffold_15:11580139-11580637(-) (11)	NA	O75643	U5 small nuclear ribonucleoprotein 200 kDa helicase	AT1G20960.2	"U5 small nuclear ribonucleoprotein helicase, putative "	LOC_Os02g01740.1	"U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed"	Medtr2g076960.1	AAA ATPase; Sec63; ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.37725.1.A1_s_at	A	A1TS	POPTR_0001s43380	POPTR_0001s43380 (11)	scaffold_1:43421191-43421556(-) (11)	NA	Q14008	Cytoskeleton-associated protein 5	AT2G35630.1	ARM repeat superfamily protein 	LOC_Os01g60040.1	"HEAT repeat family protein, putative, expressed"	Medtr8g026460.1	VHS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37731.1.A1_at	A	A1TS	POPTR_0001s43320	POPTR_0001s43320 (11)	scaffold_1:43365237-43365724(+) (11)	NA	NA	NA	AT2G36840.1	ACT-like superfamily protein 	LOC_Os09g39740.1	"ACT domain containing protein, expressed"	Medtr7g124000.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.37733.1.S1_at	A	A1TS	POPTR_0001s28280	POPTR_0001s28280 (11)	scaffold_1:27057016-27059222(+) (11)	NA	Q9HFE7	Ankyrin repeat-containing protein P16F5.05c	AT5G12320.1	ankyrin repeat family protein 	LOC_Os07g46500.2	"ankyrin repeat domain containing protein, putative, expressed"	Medtr3g100680.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37734.1.A1_at	A	A1TA	POPTR_0001s44960	POPTR_0001s44960 (9)	scaffold_1:45287539-45288092(-) (11)	NA	Q9FFU1	"CRS2-associated factor 2, mitochondrial"	AT5G54890.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os08g08860.1	"CRS2-associated factor 2, mitochondrial precursor, putative, expressed"	Medtr7g083490.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.37738.1.A1_at	A	A1TS	POPTR_0001s29620	POPTR_0001s29620 (10)	scaffold_1:28257838-28258625(+) (11)	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.37739.1.S1_at	A	A1TS	POPTR_0014s08700	POPTR_0014s08700 (11)	scaffold_14:6447330-6448754(-) (11)	NA	Q8VYU6	Golgin candidate 4	AT2G46180.1	golgin candidate 4 	LOC_Os08g29730.1	"intracellular protein transport protein USO1-related, putative, expressed"	Medtr7g088950.1	"GC4, putative "	GO:0016032|viral reproduction	NA	NA
PtpAffx.37744.1.A1_s_at	A	A1TS	POPTR_0007s13990	POPTR_0007s13990 (11)	scaffold_7:13951467-13951979(+) (11)	NA	Q7XM16	Zinc finger CCCH domain-containing protein 30	AT1G19860.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os04g56750.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g090190.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.37746.1.A1_at	A	A1TS	POPTR_0002s15960	POPTR_0002s15960 (11)	scaffold_2:11895004-11895917(-) (11)	NA	NA	NA	AT2G45850.2	AT hook motif DNA-binding family protein 	LOC_Os02g57820.1	"AT hook motif domain containing protein, expressed"	Medtr7g084950.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
PtpAffx.37748.1.A1_at	A	A1TS	POPTR_0001s21580	POPTR_0001s21580 (11)	scaffold_1:20082861-20083159(-) (11)	NA	Q9C9F0	Probable WRKY transcription factor 9	AT1G68150.1	WRKY DNA-binding protein 9 	LOC_Os01g14440.1	"OsWRKY1v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g009100.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.37764.1.S1_at	A	A1TS	POPTR_0001s33310	POPTR_0001s33310 (11)	scaffold_1:31495046-31495671(-) (11)	NA	NA	NA	AT3G26950.1	unknown protein; Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g31110.1	expressed protein	Medtr7g027170.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37778.1.S1_s_at	A	A1TS	POPTR_0007s02020	POPTR_0007s02020 (11)	scaffold_7:1176335-1177256(+) (11)	NA	Q620W3	Protein EFR3 homolog	AT1G05960.1	ARM repeat superfamily protein 	LOC_Os01g67290.1	"cyclin-related protein, putative, expressed"	Medtr2g118260.1	"cyclin-related protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37782.1.A1_at	A	A1TS	POPTR_0002s17180	POPTR_0002s17180 (11)	scaffold_2:12946628-12946834(-) (11)	NA	Q9M364	Histone-lysine N-methyltransferase ATX3	AT3G61740.2	SET domain protein 14 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37783.1.A1_s_at	A	A1TS	POPTR_0016s14490	POPTR_0016s14490 (11)	scaffold_16:13683101-13683574(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.37785.1.A1_s_at	A	A1TS	POPTR_0001s45610	POPTR_0001s45610 (11)	scaffold_1:46136634-46137738(-) (11)	NA	P24397	Hyoscyamine 6-dioxygenase	AT4G10490.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.37788.1.A1_at	A	A1MS	POPTR_0009s17180	POPTR_0009s17180 (11)	scaffold_9:12924540-12924894(-) (11)	NA	P93025	Phototropin-2	AT5G58140.1	phototropin 2 	LOC_Os04g23890.3	"AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37792.1.A1_at	A	A1TS	POPTR_0025s00740	POPTR_0025s00740 (10)	scaffold_25:395191-397051(+) (10)	NA	O22060	Sucrose-phosphate synthase 1	AT5G20280.1	sucrose phosphate synthase 1F 	LOC_Os08g20660.2	"sucrose-phosphate synthase, putative, expressed"	Medtr8g121670.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.378.4.A1_s_at	A	A1TS	POPTR_0001s40480	POPTR_0001s40480 (11)	scaffold_1:39922661-39923034(-) (11)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14420.2	Aldolase-type TIM barrel family protein 	LOC_Os03g57220.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.3780.1.S1_at	A	A1TS	POPTR_0021s01010	POPTR_0021s01010 (11)	scaffold_21:596748-597401(+) (11)	NA	NA	NA	AT4G21790.1	tobamovirus multiplication 1 	LOC_Os03g36790.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37811.1.A1_at	A	A1TS	POPTR_0017s09590	POPTR_0017s09590 (9)	scaffold_17:8214609-8214861(-) (9)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os09g33450.2	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.37815.1.A1_s_at	A	A1TS	POPTR_0005s20040	POPTR_0005s20040 (11)	scaffold_5:19065293-19065774(+) (11)	NA	Q8LLE5	Filament-like plant protein (Fragment)	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os11g06910.2	"myosin heavy chain-related, putative, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37823.1.A1_at	A	A1TS	POPTR_0001s47410	POPTR_0001s47410 (10)	scaffold_1:47622021-47622640(-) (10)	NA	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os04g56470.1	"amino acid transporter, putative, expressed"	CU013523_1.1	"Amino acid transporter, transmembrane CU013523.3 15682-12598 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37828.1.A1_at	A	A1TS	POPTR_0008s19220	POPTR_0008s19220 (9)	scaffold_8:13173344-13173761(-) (11)	NA	NA	NA	AT1G70550.1	Protein of Unknown Function (DUF239) 	LOC_Os01g36660.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr3g143730.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3783.1.S1_at	A	A1TS	POPTR_0006s24440	POPTR_0006s24440 (10)	scaffold_6:23048557-23049094(-) (10)	NA	Q84KI6	"UDP-sulfoquinovose synthase, chloroplastic"	AT4G33030.1	sulfoquinovosyldiacylglycerol 1 	LOC_Os05g32140.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr7g107550.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.37837.1.A1_s_at	A	A1TS	POPTR_0003s02590	POPTR_0003s02590 (11)	scaffold_3:2683140-2683663(-) (11)	NA	Q9LSB8	Putative pentatricopeptide repeat-containing protein At3g15930	AT3G15930.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g08120.1	"pentatricopeptide, putative, expressed"	Medtr4g005700.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3784.1.A1_at	A	A1TS	POPTR_0004s22110	POPTR_0004s22110 (11)	scaffold_4:21061455-21061925(+) (11)	NA	Q5H9R7	Serine/threonine-protein phosphatase 6 regulatory subunit 3	AT1G07990.1	SIT4 phosphatase-associated family protein 	LOC_Os05g51490.2	"SIT4 phosphatase-associated protein domain containing protein, expressed"	Medtr2g110170.2	SIT4 phosphatase-associated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3784.2.A1_at	A	A1TS	POPTR_0009s02010	POPTR_0009s02010 (9)	scaffold_9:2593418-2593915(+) (11)	NA	Q5F471	Serine/threonine-protein phosphatase 6 regulatory subunit 3	AT1G07990.1	SIT4 phosphatase-associated family protein 	LOC_Os04g52940.1	"SIT4 phosphatase-associated protein domain containing protein, expressed"	Medtr2g110170.2	SIT4 phosphatase-associated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37849.1.S1_at	A	A1TS	POPTR_0009s02180	POPTR_0009s02180 (10)	scaffold_9:2885176-2887220(+) (10)	NA	O75937	DnaJ homolog subfamily C member 8	AT5G22080.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g15480.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g104870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.37856.1.A1_at	A	A1MS	POPTR_0010s15470	POPTR_0010s15470 (11)	scaffold_10:14693222-14693447(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37856.1.A1_s_at	A	A1TS	POPTR_0010s15470	POPTR_0010s15470 (9)	scaffold_10:14693093-14693429(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37864.1.A1_at	A	A1TS	POPTR_0006s12560	POPTR_0006s12560 (11)	scaffold_6:9713727-9714505(+) (11)	NA	Q03943	"Membrane-associated 30 kDa protein, chloroplastic"	AT1G65260.1	plastid transcriptionally active 4 	LOC_Os01g67000.1	"membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed"	Medtr4g092710.2	PspA/IM30 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37866.1.A1_s_at	A	A1TS	POPTR_0003s02710	POPTR_0003s02710 (11)	scaffold_3:2795174-2795252(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT3G15800.1	Glycosyl hydrolase superfamily protein 	LOC_Os02g10660.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr4g005540.1	"Glycoside hydrolase, family 17; Methyl-CpG binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.3787.2.S1_a_at	A	A2TS	POPTR_0001s24450	POPTR_0009s03440 (11)//POPTR_0001s24450 (11)	scaffold_1:23732577-23735681(-) (11)//scaffold_9:4055063-4057298(-) (11)	NA	Q9FY06	"Inner membrane protein PPF-1, chloroplastic"	AT2G28800.1	63 kDa inner membrane family protein 	LOC_Os01g05800.1	"inner membrane protein, putative, expressed"	Medtr3g102810.1	60 kDa inner membrane insertion protein 	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.3788.2.S1_s_at	A	A1TS	POPTR_0009s06020	POPTR_0009s06020 (11)	scaffold_9:5942638-5943043(-) (11)	NA	Q5R4F4	Protein transport protein Sec31A	AT3G63460.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g46370.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3788.3.S1_a_at	A	A1TS	POPTR_0009s06020	POPTR_0009s06020 (11)	scaffold_9:5943928-5944567(-) (11)	NA	Q5R4F4	Protein transport protein Sec31A	AT3G63460.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g46370.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37890.1.A1_at	A	A1TS	POPTR_0012s02180	POPTR_0012s02180 (10)	scaffold_12:1828651-1829010(-) (10)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT5G24240.1	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr3g124030.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.37891.1.S1_at	A	A1TS	POPTR_0008s04070	POPTR_0008s04070 (11)	scaffold_8:2270351-2271012(+) (11)	NA	Q12893	Transmembrane protein 115	AT3G07950.1	rhomboid protein-related 	LOC_Os03g24390.1	"OsRhmbd8 - Putative Rhomboid homologue, expressed"	Medtr1g121420.1	"Transmembrane protein 115, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37891.2.S1_at	A	A1TS	POPTR_0010s22770	POPTR_0010s22770 (11)	scaffold_10:19553143-19554060(-) (11)	NA	Q12893	Transmembrane protein 115	AT3G07950.1	rhomboid protein-related 	LOC_Os07g46170.1	"OsRhmbd13 - Putative Rhomboid homologue, expressed"	Medtr1g121420.1	"Transmembrane protein 115, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37902.1.A1_s_at	A	A1TS	POPTR_0001s10770	POPTR_0001s10770 (11)	scaffold_1:8385415-8385705(+) (11)	NA	Q8L7I1	Uncharacterized protein At4g10930	AT4G10930.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g10700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37904.1.A1_at	A	A1TS	POPTR_0001s36010	POPTR_0001s36010 (11)	scaffold_1:34498519-34498831(+) (11)	NA	Q8GUM4	Uncharacterized membrane protein At3g27390	AT3G27390.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g40700.3	"steroid nuclear receptor, ligand-binding, putative, expressed"	Medtr7g031770.1	"Steroid nuclear receptor, ligand-binding, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37904.1.A1_s_at	A	A1TS	POPTR_0001s36010	POPTR_0001s36010 (11)	scaffold_1:34498296-34498800(+) (11)	NA	Q8GUM4	Uncharacterized membrane protein At3g27390	AT3G27390.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g40700.3	"steroid nuclear receptor, ligand-binding, putative, expressed"	Medtr7g031770.1	"Steroid nuclear receptor, ligand-binding, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37913.1.A1_s_at	A	A1TS	POPTR_0003s13980	POPTR_0003s13980 (11)	scaffold_3:14206383-14207043(+) (11)	NA	Q8BU04	Putative E3 ubiquitin-protein ligase UBR7	AT4G23860.3	PHD finger protein-related 	LOC_Os06g33810.1	"zinc finger protein, putative, expressed"	Medtr5g009280.1	"Zinc finger, PHD-type; Zinc finger, N-recognin "	NA	GO:0004842|ubiquitin-protein ligase activity||GO:0008270|zinc ion binding	NA
PtpAffx.37919.1.A1_at	A	A1TS	POPTR_0010s18980	POPTR_0010s18980 (11)	scaffold_10:17048204-17048437(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G49690.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37920.1.A1_at	A	A1TS	POPTR_0005s20920	POPTR_0005s20920 (10)	scaffold_5:20041239-20041527(+) (11)	NA	P07591	"Thioredoxin M-type, chloroplastic"	AT3G15360.1	thioredoxin M-type 4 	LOC_Os12g08730.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.37920.2.A1_at	A	A1MS	POPTR_0002s07390	POPTR_0002s07390 (10)	scaffold_2:5064152-5064688(-) (10)	NA	P07591	"Thioredoxin M-type, chloroplastic"	AT4G03520.1	Thioredoxin superfamily protein 	LOC_Os12g08730.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.37920.2.A1_s_at	A	A1TS	POPTR_0002s07390	POPTR_0002s07390 (11)	scaffold_2:5064128-5064451(-) (11)	NA	P07591	"Thioredoxin M-type, chloroplastic"	AT4G03520.1	Thioredoxin superfamily protein 	LOC_Os12g08730.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.37924.1.A1_s_at	A	A1TS	POPTR_0006s08640	POPTR_0006s08640 (11)	scaffold_6:6334063-6335297(-) (11)	NA	P73177	Uncharacterized ribonuclease sll1290	AT5G02250.1	Ribonuclease II/R family protein 	LOC_Os01g62440.1	"ribonuclease protein, putative, expressed"	Medtr8g087680.1	"Ribonuclease II; Nucleotide binding protein, PINc "	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.37928.1.A1_at	A	A1MS	POPTR_0018s02030	POPTR_0018s02030 (10)	scaffold_18:1818131-1818343(-) (10)	NA	Q96GN5	Cell division cycle-associated 7-like protein	AT1G67780.1	Zinc-finger domain of monoamine-oxidase A repressor R1 protein 	LOC_Os05g23530.4	expressed protein	Medtr4g128660.1	protein binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37931.1.A1_at	A	A1TS	POPTR_0010s11160	POPTR_0010s11160 (11)	scaffold_10:11506412-11506945(-) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G01940.1	C2H2-like zinc finger protein 	LOC_Os09g27650.2	"ZOS9-14 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.37934.1.A1_at	A	A1TS	POPTR_0018s08150	POPTR_0018s08150 (10)	scaffold_18:8971330-8971615(-) (10)	NA	O82318	Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790	AT2G25790.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g04190.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr3g130450.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.37947.1.S1_at	A	A1TS	POPTR_0002s16020	POPTR_0002s16020 (11)	scaffold_2:11927916-11928462(-) (11)	NA	Q55158	Riboflavin biosynthesis protein ribD	AT4G20960.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os03g02600.1	"riboflavin biosynthesis protein ribD, putative, expressed"	Medtr8g139330.1	Riboflavin biosynthesis protein RibD 	NA	GO:0016787|hydrolase activity||GO:0008270|zinc ion binding	NA
PtpAffx.37951.1.S1_at	A	A1TS	POPTR_0003s18240	POPTR_0003s18240 (11)	scaffold_3:17409644-17410068(+) (11)	NA	P28829	Protein kinase byr2	AT4G36950.1	mitogen-activated protein kinase kinase kinase 21 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37954.1.S1_at	A	A1TS	POPTR_0001s18090	POPTR_0001s18090 (10)	scaffold_1:15078385-15080374(-) (10)	NA	NA	NA	AT1G52330.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os03g48950.1	expressed protein	Medtr2g123130.1	hypothetical protein 	GO:0009269|response to desiccation	NA	NA
PtpAffx.37956.1.A1_at	A	A1TA	POPTR_0005s04050	POPTR_0005s04050 (11)	scaffold_5:2692291-2692658(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37957.1.A1_a_at	A	A1TS	POPTR_0006s20460	POPTR_0006s20460 (11)	scaffold_6:19465203-19465725(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G46920.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os06g08280.1	"protein kinase domain containing protein, expressed"	Medtr8g122640.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37957.1.A1_at	A	A1TS	POPTR_0006s20460	POPTR_0006s20460 (9)	scaffold_6:19464793-19464926(-) (9)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G46920.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os06g08280.1	"protein kinase domain containing protein, expressed"	Medtr8g122640.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37957.2.A1_at	A	A1TS	POPTR_0006s20460	POPTR_0006s20460 (11)	scaffold_6:19464959-19465208(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G46920.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os06g08280.1	"protein kinase domain containing protein, expressed"	Medtr8g122640.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37957.3.A1_a_at	A	A2TS	POPTR_0006s20460	POPTR_0006s20460 (11)//POPTR_0018s12220 (11)	scaffold_18:12759560-12759705(-) (11)//scaffold_6:19465382-19465522(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G46920.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os06g08280.1	"protein kinase domain containing protein, expressed"	Medtr8g122640.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37965.1.A1_a_at	A	A2TS	POPTR_0011s10840	POPTR_0011s10840 (11)//POPTR_0011s10870 (11)	scaffold_11:13401779-13401920(-) (11)//scaffold_11:13417631-13417772(-) (11)	NA	Q7F1M0	ATP-dependent DNA helicase 2 subunit KU70	AT1G16970.1	KU70 homolog 	LOC_Os07g08729.1	"ATP-dependent DNA helicase 2 subunit 1, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.37976.1.A1_a_at	A	A1TS	POPTR_0001s24140	POPTR_0001s24140 (11)	scaffold_1:23511829-23512612(+) (11)	NA	NA	NA	AT2G37390.1	Chloroplast-targeted copper chaperone protein 	LOC_Os03g60480.1	"heavy metal-associated domain containing protein, expressed"	Medtr7g120660.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.37981.1.S1_at	A	A1TS	POPTR_0013s01180	POPTR_0013s01180 (10)	scaffold_13:641246-641683(-) (10)	NA	NA	NA	AT5G26910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1); Has 1322 Blast hits to 684 proteins in 162 species: Archae - 4; Bacteria - 497; Metazoa - 157; Fungi - 101; Plants - 155; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink). 	LOC_Os03g19080.3	expressed protein	Medtr2g038920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37983.1.A1_at	A	A1TS	POPTR_0017s06020	POPTR_0017s06020 (11)	scaffold_17:4666855-4668845(-) (11)	NA	Q2KIJ2	UPF0558 protein C1orf156 homolog	AT2G43320.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g41500.2	expressed protein	Medtr2g118160.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37990.1.S1_at	A	A1TS	POPTR_0013s15090	POPTR_0013s15090 (11)	scaffold_13:15141387-15142059(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT1G06890.2	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os01g07310.1	"transporter-related, putative, expressed"	Medtr2g110080.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.37990.2.A1_at	A	A1TS	POPTR_0019s14940	POPTR_0019s14940 (11)	scaffold_19:15578876-15579491(-) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT1G06890.2	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os01g07310.1	"transporter-related, putative, expressed"	Medtr2g110080.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.37994.1.A1_at	A	A1TS	POPTR_0012s05540	POPTR_0012s05540 (11)	scaffold_12:5191462-5191498(-) (11)	NA	A1L272	Equilibrative nucleoside transporter 4	AT1G70330.1	equilibrative nucleotide transporter 1 	LOC_Os08g10450.1	"nucleoside transporter, putative, expressed"	Medtr8g120640.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
PtpAffx.37994.1.A1_s_at	A	A1TS	POPTR_0012s05540	POPTR_0012s05540 (11)	scaffold_12:5191554-5191886(-) (11)	NA	A1L272	Equilibrative nucleoside transporter 4	AT1G70330.1	equilibrative nucleotide transporter 1 	LOC_Os08g10450.1	"nucleoside transporter, putative, expressed"	Medtr8g120640.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
PtpAffx.380.1.S1_at	A	A1TS	POPTR_0010s25610	POPTR_0010s25610 (11)	scaffold_10:21205847-21206753(+) (11)	NA	O74452	Cell wall integrity protein scw1	AT3G21215.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g15080.1	"proline rich protein 3, putative, expressed"	Medtr4g023210.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.38001.1.A1_at	A	A1MA	POPTR_0004s03990	POPTR_0004s03990 (10)	scaffold_4:2827590-2827746(-) (10)	NA	Q9FZ80	Sulfotransferase 17	AT4G26280.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g04300.1	sulfotransferase domain containing protein	Medtr8g077530.1	Sulfotransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38011.1.S1_at	A	A1MS	POPTR_0002s05760	POPTR_0002s05760 (11)	scaffold_2:3776066-3776789(+) (11)	NA	Q6PGS5	Transmembrane protein 56-B	AT4G19645.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os05g43540.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.38017.1.S1_x_at	A	A1TS	POPTR_0013s02050	POPTR_0013s02050 (9)	scaffold_13:1203341-1203911(+) (9)	NA	Q69V23	Probable cellulose synthase A catalytic subunit 3 [UDP-forming]	AT5G64740.1	cellulose synthase 6 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr4g141680.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.38017.2.S1_a_at	A	A1TS	POPTR_0013s02050	POPTR_0013s02050 (11)	scaffold_13:1203099-1203911(+) (11)	NA	Q69V23	Probable cellulose synthase A catalytic subunit 3 [UDP-forming]	AT5G64740.1	cellulose synthase 6 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr4g141680.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.38017.3.S1_at	A	A1TS	POPTR_0013s02050	POPTR_0013s02050 (9)	scaffold_13:1203432-1203620(+) (9)	NA	Q69V23	Probable cellulose synthase A catalytic subunit 3 [UDP-forming]	AT5G64740.1	cellulose synthase 6 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr4g141680.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.38022.1.A1_at	A	A1TS	POPTR_0005s02730	POPTR_0005s02730 (11)	scaffold_5:1737698-1738073(-) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT3G50700.1	indeterminate(ID)-domain 2 	LOC_Os02g31890.1	ZOS2-08 - C2H2 zinc finger protein	Medtr7g130150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.38022.2.A1_at	A	A1TS	POPTR_0013s01990	POPTR_0013s01990 (11)	scaffold_13:1147913-1148424(-) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT3G50700.1	indeterminate(ID)-domain 2 	LOC_Os02g31890.1	ZOS2-08 - C2H2 zinc finger protein	Medtr7g130150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.38033.1.S1_at	A	A1TS	POPTR_0004s07410	POPTR_0004s07410 (11)	scaffold_4:6105525-6106756(-) (11)	NA	Q55E13	Zinc finger protein ZPR1 homolog	AT5G22480.1	ZPR1 zinc-finger domain protein 	LOC_Os08g36774.1	"zinc finger family protein, putative, expressed"	Medtr4g114690.2	"Zinc finger, ZPR1-type "	NA	GO:0005515|protein binding||GO:0008270|zinc ion binding	NA
PtpAffx.38035.1.A1_s_at	A	A1TS	POPTR_0003s08890	POPTR_0003s08890 (11)	scaffold_3:10212990-10213130(+) (11)	NA	NA	NA	AT1G32540.3	lsd one like 1 	LOC_Os08g06280.3	"LSD1 zinc finger domain containing protein, expressed"	Medtr8g102780.1	"Zinc finger, LSD1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38062.1.A1_at	A	A1TS	POPTR_0002s19180	POPTR_0002s19180 (10)	scaffold_2:15110176-15110650(-) (10)	NA	O80522	GDSL esterase/lipase At1g09390	AT1G09390.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g22780.2	"GDSL-like lipase/acylhydrolase, putative, expressed"	AC235094_3.1	"Lipolytic enzyme, G-D-S-L AC235094.1 17941-22012 E EGN_Mt090430 200"	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.38065.2.A1_s_at	A	A1TS	POPTR_0018s06400	POPTR_0018s06400 (11)	scaffold_18:6253570-6253673(+) (11)	NA	O48788	Probable inactive receptor kinase At2g26730	AT2G26730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g42294.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g118800.1	Formate C-acetyltransferase glycine radical; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.38074.1.S1_at	A	A1TS	POPTR_0019s05090	POPTR_0019s05090 (11)	scaffold_19:5333803-5334174(-) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os03g59250.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38074.2.A1_at	A	A1TS	POPTR_0013s05410	POPTR_0013s05410 (11)	scaffold_13:3868613-3869030(+) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os03g59250.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38074.3.S1_s_at	A	A1TS	POPTR_0019s05090	POPTR_0019s05090 (11)	scaffold_19:5335055-5335849(-) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os03g59250.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38078.1.A1_s_at	A	A1TS	POPTR_0018s01880	POPTR_0018s01880 (11)	scaffold_18:1694541-1695372(-) (11)	NA	NA	NA	AT4G32160.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr3g137530.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.38078.2.A1_s_at	A	A1TS	POPTR_0018s01880	POPTR_0018s01880 (11)	scaffold_18:1694719-1695410(-) (11)	NA	NA	NA	AT4G32160.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr3g137530.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.3808.1.A1_at	A	A1TS	POPTR_0010s02380	POPTR_0010s02380 (11)	scaffold_10:2731725-2732193(-) (11)	NA	Q8YQL2	Carbamoyl-phosphate synthase large chain	AT1G29900.1	carbamoyl phosphate synthetase B 	LOC_Os01g38970.1	"carbamoyl-phosphate synthase large chain, putative, expressed"	Medtr2g111290.1	"Carbamoyl-phosphate synthase, large subunit, glutamine-dependent; MGS-like; "	GO:0006807|nitrogen compound metabolic process	GO:0004086|carbamoyl-phosphate synthase activity||GO:0005524|ATP binding	NA
PtpAffx.3808.2.A1_at	A	A1TS	POPTR_0010s02380	POPTR_0010s02380 (10)	scaffold_10:2730673-2731021(-) (11)	NA	Q8YQL2	Carbamoyl-phosphate synthase large chain	AT1G29900.1	carbamoyl phosphate synthetase B 	LOC_Os01g38970.1	"carbamoyl-phosphate synthase large chain, putative, expressed"	Medtr2g111290.1	"Carbamoyl-phosphate synthase, large subunit, glutamine-dependent; MGS-like; "	GO:0006807|nitrogen compound metabolic process	GO:0004086|carbamoyl-phosphate synthase activity||GO:0005524|ATP binding	NA
PtpAffx.38086.1.A1_s_at	A	A1TS	POPTR_0014s05190	POPTR_0014s05190 (11)	scaffold_14:3956681-3956900(-) (11)	NA	Q40089	"ATP synthase subunit delta', mitochondrial"	AT5G47030.1	"ATPase, F1 complex, delta/epsilon subunit "	LOC_Os07g31300.1	"ATP synthase delta chain, mitochondrial precursor, putative, expressed"	Medtr8g008620.1	"H+-transporting two-sector ATPase, delta/epsilon subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)"""
PtpAffx.381.1.S1_a_at	A	A2TS	POPTR_0004s04860	POPTR_0004s04860 (11)//POPTR_0011s05670 (10)	scaffold_11:5641939-5642815(-) (10)//scaffold_4:3606126-3607486(-) (11)	NA	P21727	"Triose phosphate/phosphate translocator, chloroplastic"	AT5G46110.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os01g13770.1	"DUF250 domain containing protein, putative, expressed"	Medtr5g047000.1	Tpt phosphate/phosphoenolpyruvate translocator 	NA	NA	GO:0016020|membrane
PtpAffx.381.2.A1_at	A	A1TS	POPTR_0011s05670	POPTR_0011s05670 (11)	scaffold_11:5643230-5644479(-) (11)	NA	P21727	"Triose phosphate/phosphate translocator, chloroplastic"	AT5G46110.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os01g13770.1	"DUF250 domain containing protein, putative, expressed"	Medtr5g047000.1	Tpt phosphate/phosphoenolpyruvate translocator 	NA	NA	GO:0016020|membrane
PtpAffx.381.3.A1_a_at	A	A1TS	POPTR_0011s05670	POPTR_0011s05670 (9)	scaffold_11:5644855-5645113(-) (9)	NA	P21727	"Triose phosphate/phosphate translocator, chloroplastic"	AT5G46110.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os01g13770.1	"DUF250 domain containing protein, putative, expressed"	Medtr5g047000.1	Tpt phosphate/phosphoenolpyruvate translocator 	NA	NA	GO:0016020|membrane
PtpAffx.38103.1.S1_a_at	A	A1TS	POPTR_0009s04530	POPTR_0009s04530 (11)	scaffold_9:4869190-4869640(+) (11)	NA	Q304B9	Neutral ceramidase	AT5G58980.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38108.1.A1_at	A	A1TS	POPTR_0002s10790	POPTR_0002s10790 (11)	scaffold_2:7837465-7837881(+) (11)	NA	Q9VTG7	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	AT1G27600.2	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os10g13810.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr3g127830.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
PtpAffx.38108.1.A1_s_at	A	A1TS	POPTR_0002s10790	POPTR_0002s10790 (11)	scaffold_2:7837404-7838131(+) (11)	NA	Q9VTG7	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	AT1G27600.2	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os10g13810.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr3g127830.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
PtpAffx.38126.1.S1_at	A	A1MS	POPTR_0003s06570	POPTR_0003s06570 (11)	scaffold_3:8067220-8067607(+) (11)	NA	Q9SYG7	Aldehyde dehydrogenase family 7 member B4	AT1G54100.2	aldehyde dehydrogenase 7B4 	LOC_Os09g26880.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g049500.1	Aldehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.382.1.S1_at	A	A1TS	POPTR_0006s09600	POPTR_0006s09600 (11)	scaffold_6:7056542-7057072(+) (11)	NA	Q39529	Agglutinin-2	AT5G01090.1	Concanavalin A-like lectin family protein 	LOC_Os12g38610.1	"lectin-like receptor kinase, putative, expressed"	Medtr4g015940.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.382.2.A1_at	A	A1TS	POPTR_0016s11640	POPTR_0016s11640 (10)	scaffold_16:10862459-10862958(+) (10)	NA	P02872	Galactose-binding lectin	AT5G01090.1	Concanavalin A-like lectin family protein 	LOC_Os07g03900.1	"lectin-like receptor kinase, putative"	Medtr4g015940.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.38213.1.A1_at	A	A1TS	POPTR_0004s14440	POPTR_0004s14440 (10)	scaffold_4:14948637-14948964(-) (10)	NA	Q9FGN8	Protein DYAD	AT5G23610.2	INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SWITCH1 (TAIR:AT5G51330.1); Has 173 Blast hits to 168 proteins in 34 species: Archae - 3; Bacteria - 10; Metazoa - 6; Fungi - 2; Plants - 115; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). 	LOC_Os03g44760.1	"SWI1, putative, expressed"	AC235756_28.1	"SWI1, related AC235756.1 180586-176312 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38225.1.S1_at	A	A1TS	POPTR_0015s12970	POPTR_0015s12970 (9)	scaffold_15:13105024-13105313(-) (9)	NA	NA	NA	AT5G23890.1	"LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os03g64400.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr5g069510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38230.1.S1_at	A	A1TS	POPTR_0003s03090	POPTR_0003s03090 (11)	scaffold_3:3444786-3444918(-) (11)	NA	Q5RDY2	Transmembrane 9 superfamily member 4	AT3G13772.1	transmembrane nine 7 	LOC_Os06g37160.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr1g016840.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.38280.1.S1_at	A	A2TS	POPTR_0017s10600	POPTR_0017s10600 (11)//POPTR_0479s00200 (10)	scaffold_17:10039840-10040217(+) (11)//scaffold_479:4751-5128(+) (11)	NA	Q9C5D2	F-box/LRR-repeat protein 4	AT5G40470.1	RNI-like superfamily protein 	LOC_Os11g42160.1	"F-box/LRR-repeat protein 3, putative, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.383.1.A1_s_at	A	A2TS	POPTR_0015s15300	POPTR_0015s15300 (11)//POPTR_0012s12320 (10)	scaffold_12:12535362-12535702(+) (10)//scaffold_15:14625762-14627410(-) (11)	NA	O23708	Proteasome subunit alpha type-2-A	AT1G16470.2	proteasome subunit PAB1 	LOC_Os02g42320.2	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.383.1.A1_x_at	A	A1TS	POPTR_0015s15300	POPTR_0015s15300 (11)	scaffold_15:14625251-14627706(-) (11)	NA	O23708	Proteasome subunit alpha type-2-A	AT1G16470.2	proteasome subunit PAB1 	LOC_Os02g42320.2	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.383.2.S1_at	A	A1TS	POPTR_0011s03570	POPTR_0011s03570 (11)	scaffold_11:3634039-3634111(-) (11)	NA	B9M4V3	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.383.3.S1_s_at	A	A2TS	POPTR_0001s43940	POPTR_0001s43940 (11)//POPTR_0011s13310 (11)	scaffold_1:44355915-44356154(+) (11)//scaffold_11:16026178-16026440(+) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.383.6.S1_s_at	A	A2TS	POPTR_0008s05870	POPTR_0010s20810 (11)//POPTR_0008s05870 (11)	scaffold_10:18259275-18259877(+) (11)//scaffold_8:3450982-3451572(-) (11)	NA	Q7X999	"Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic"	AT2G39730.2	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.38333.1.S1_at	A	A1TS	POPTR_0021s00850	POPTR_0021s00850 (10)	scaffold_21:512202-512833(+) (10)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G21690.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr5g034470.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.38384.1.S1_at	A	A1TS	POPTR_0007s13540	POPTR_0007s13540 (11)	scaffold_7:13600832-13601358(+) (11)	NA	Q9SCV9	Beta-galactosidase 3	AT4G36360.1	beta-galactosidase 3 	LOC_Os03g06940.1	"beta-galactosidase, putative, expressed"	Medtr5g021090.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.38384.2.S1_a_at	A	A1TS	POPTR_0007s13540	POPTR_0007s13540 (11)	scaffold_7:13599642-13600167(+) (11)	NA	Q9SCV9	Beta-galactosidase 3	AT4G36360.1	beta-galactosidase 3 	LOC_Os03g06940.1	"beta-galactosidase, putative, expressed"	Medtr5g021090.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.3841.2.S1_at	A	A1TS	POPTR_0004s21750	POPTR_0004s21750 (11)	scaffold_4:20778411-20778997(-) (11)	NA	Q949P3	Uncharacterized protein At2g17340	AT4G35360.1	Uncharacterised conserved protein (UCP030210) 	LOC_Os06g21980.1	"pantothenate kinase 4, putative, expressed"	Medtr7g034760.1	Protein of unknown function DUF89 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38416.1.S1_at	A	A1TA	POPTR_0002s25530	POPTR_0002s25530 (10)	scaffold_2:22592081-22592573(-) (10)	NA	Q03662	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os05g34150.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38423.1.S1_at	A	A1TS	POPTR_0004s03170	POPTR_0004s03170 (11)	scaffold_4:2137721-2138267(+) (11)	NA	Q07970	Kinesin-1	AT4G21270.1	kinesin 1 	LOC_Os04g53760.2	"kinesin motor domain containing protein, putative, expressed"	Medtr2g010810.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.38430.1.S1_at	A	A2TS	POPTR_0011s12900	POPTR_0118s00250 (11)//POPTR_0011s12900 (11)	scaffold_11:15606590-15606782(+) (11)//scaffold_118:30835-31027(-) (11)//scaffold_118:76632-76824(-) (11)	NA	O81833	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	AT4G27300.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.38446.1.S1_at	A	A1TS	POPTR_0002s26170	POPTR_0002s26170 (10)	scaffold_2:23189960-23191567(+) (10)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
PtpAffx.38452.1.S1_at	A	A1TS	POPTR_0003s13240	POPTR_0003s13240 (11)	scaffold_3:13634017-13635739(+) (11)	NA	NA	NA	AT1G63980.1	D111/G-patch domain-containing protein 	LOC_Os03g03390.1	"G-patch domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.38456.1.A1_at	A	A1TS	POPTR_0003s16910	POPTR_0003s16910 (11)	scaffold_3:16423207-16424064(+) (11)	NA	Q9FYG2	Calmodulin-binding transcription activator 4	AT1G67310.1	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains 	LOC_Os01g69910.2	"calmodulin-binding transcription activator, putative, expressed"	Medtr3g104090.1	IQ calmodulin-binding region; Cell surface receptor IPT/TIG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3847.3.A1_at	A	A1TS	POPTR_0001s16800	POPTR_0001s16800 (11)	scaffold_1:13599393-13599934(+) (11)	NA	P24465	Cytochrome P450 71A1	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.3847.4.A1_s_at	A	A2TS	POPTR_0008s11730	POPTR_0008s11730 (11)//POPTR_0010s13760 (11)	scaffold_10:13505846-13506835(+) (11)//scaffold_8:7510383-7511275(-) (11)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	AC233660_2.1	Armadillo-like helical AC233660.2 13161-17702 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38474.1.A1_at	A	A1TS	POPTR_0009s10080	POPTR_0009s10080 (11)	scaffold_9:8764714-8765073(-) (11)	NA	Q8T9S7	"Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN"	AT3G19420.1	PTEN 2 	LOC_Os12g21890.1	"PTEN, putative, expressed"	Medtr5g016480.1	"Dual specificity protein phosphatase; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38497.1.A1_at	A	A1TS	POPTR_0008s10150	POPTR_0008s10150 (11)	scaffold_8:6371359-6371910(+) (11)	NA	Q0VMF9	30S ribosomal protein S6	AT3G17170.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os12g37610.1	"ribosomal protein S6, putative, expressed"	Medtr2g037650.1	Ribosomal protein S6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38514.1.A1_a_at	A	A1TS	POPTR_0017s12170	POPTR_0017s12170 (11)	scaffold_17:12351710-12352053(+) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.38516.1.A1_at	A	A1TS	POPTR_0001s37620	POPTR_0001s37620 (11)	scaffold_1:36584872-36585369(+) (11)	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os03g29970.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr5g103350.1	"Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone "	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.38534.1.S1_s_at	A	A2TS	POPTR_0013s12840	POPTR_0013s12860 (11)//POPTR_0013s12840 (11)	scaffold_13:13481048-13481343(-) (11)//scaffold_13:13489108-13489397(-) (11)	NA	Q9C7D6	Serine carboxypeptidase-like 17	AT3G12203.1	serine carboxypeptidase-like 17 	LOC_Os10g01110.1	"OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g022190.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.38540.1.S1_at	A	A1TS	POPTR_0001s35100	POPTR_0001s35100 (11)	scaffold_1:33375395-33376207(+) (11)	NA	Q2JW78	Chaperone protein dnaJ	AT5G23240.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os06g28050.3	expressed protein	Medtr1g046220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.38578.1.A1_at	A	A1TS	POPTR_0015s00750	POPTR_0015s00750 (11)	scaffold_15:436463-437026(+) (11)	NA	NA	NA	AT5G54180.1	plastid transcriptionally active 15 	LOC_Os02g39040.1	"mTERF domain containing protein, expressed"	Medtr3g122740.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38601.1.A1_at	A	A1TS	POPTR_0005s14100	POPTR_0005s14100 (11)	scaffold_5:11161493-11161835(-) (11)	NA	Q39193	Serine/threonine-protein kinase SRK2I	AT5G66880.1	sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 	LOC_Os03g41460.1	"CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g096830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.38612.1.S1_at	A	A1TS	POPTR_0013s07950	POPTR_0013s07950 (11)	scaffold_13:6880791-6881086(+) (11)	POPTR_0019s08310 (7)	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os01g41210.1	"transposon protein, putative, unclassified, expressed"	Medtr7g143350.1	"Plant MuDR transposase; Zinc finger, SWIM-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.38633.2.A1_at	A	A1TS	POPTR_0018s07410	POPTR_0018s07410 (11)	scaffold_18:7720299-7720429(+) (11)	NA	O65282	"20 kDa chaperonin, chloroplastic"	AT5G20720.3	chaperonin 20 	LOC_Os09g26730.1	"chaperonin, putative, expressed"	Medtr8g132830.1	GroES-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.38638.1.S1_at	A	A1TS	POPTR_0009s13260	POPTR_0009s13260 (11)	scaffold_9:10609737-10610203(+) (11)	NA	Q5SRE5	Nucleoporin NUP188 homolog	AT4G38760.1	Protein of unknown function (DUF3414) 	LOC_Os10g06610.1	expressed protein	Medtr4g100780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38659.1.S1_at	A	A1TS	POPTR_0010s07750	POPTR_0010s07750 (11)	scaffold_10:8718116-8719051(-) (11)	NA	Q9VIM5	Probable actin-related protein 2/3 complex subunit 2	AT2G33385.2	actin-related protein C2B 	LOC_Os04g43290.1	"ARPC2B, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.3866.1.S1_at	A	A1TS	POPTR_0001s02500	POPTR_0001s02500 (11)	scaffold_1:1951639-1952151(-) (11)	NA	Q93XM7	Mitochondrial carnitine/acylcarnitine carrier-like protein	AT5G46800.1	Mitochondrial substrate carrier family protein 	LOC_Os10g42299.3	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38668.1.A1_at	A	A1TS	POPTR_0002s26110	POPTR_0002s26110 (11)	scaffold_2:23086793-23087302(+) (11)	NA	NA	NA	AT1G04000.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g43310.1	expressed protein	Medtr1g090140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38669.1.S1_at	A	A1TS	POPTR_0004s19970	POPTR_0004s19970 (9)	scaffold_4:19637132-19637601(+) (9)	NA	Q8LA14	Putative phytosulfokines 6	AT3G44735.2	PHYTOSULFOKINE 3 PRECURSOR 	NA	NA	NA	NA	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.3867.1.A1_at	A	A1TS	POPTR_0006s20640	POPTR_0006s20640 (9)	scaffold_6:19662976-19663487(+) (9)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.3867.1.A1_x_at	A	A1TS	POPTR_0006s20640	POPTR_0006s20640 (10)	scaffold_6:19662976-19663487(+) (10)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.3867.4.A1_a_at	A	A1TS	POPTR_0016s04550	POPTR_0016s04550 (11)	scaffold_16:2673623-2674112(-) (11)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.38673.1.A1_at	A	A1TS	POPTR_0019s10810	POPTR_0019s10810 (11)	scaffold_19:12307698-12308080(+) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38674.1.A1_at	A	A1TS	POPTR_0010s15260	POPTR_0010s15260 (11)	scaffold_10:14579976-14580637(-) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g038600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38679.1.S1_at	A	A1TS	POPTR_0002s26350	POPTR_0002s26350 (11)	scaffold_2:23335299-23336367(+) (11)	NA	NA	NA	AT1G45170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits to 62 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g63860.1	"DANA2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3868.1.A1_s_at	A	A1TS	POPTR_0010s10420	POPTR_0010s10420 (11)	scaffold_10:10933530-10933830(-) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.38716.1.S1_at	A	A1TS	POPTR_0012s11160	POPTR_0012s11160 (11)	scaffold_12:11717397-11720033(-) (11)	NA	NA	NA	AT5G51020.1	crumpled leaf 	LOC_Os11g32160.1	expressed protein	Medtr3g151420.1	Protein of unknown function DUF1001 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3872.1.S1_a_at	A	A1TS	POPTR_0003s08070	POPTR_0003s08070 (11)	scaffold_3:9519210-9519617(+) (11)	NA	Q9LD45	Bax inhibitor 1	AT5G47120.1	BAX inhibitor 1 	LOC_Os02g03280.2	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr5g013460.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38736.1.S1_a_at	A	A2TS	POPTR_0004s16840	POPTR_0009s12600 (11)//POPTR_0004s16840 (11)	scaffold_4:17198690-17200673(-) (11)//scaffold_9:10256184-10258162(-) (11)	NA	NA	NA	AT4G34660.1	SH3 domain-containing protein 	LOC_Os10g36870.1	"src homology-3 domain protein 3, putative, expressed"	Medtr3g162940.1	SH3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38755.1.A1_at	A	A1TS	POPTR_0009s09050	POPTR_0009s09050 (11)	scaffold_9:8135289-8135474(-) (11)	NA	Q5ZKQ8	ADP-ribosylation factor-like protein 8A	AT3G49870.1	ADP-ribosylation factor-like A1C 	LOC_Os03g10370.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g015500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.38755.2.S1_s_at	A	A1TS	POPTR_0001s30030	POPTR_0001s30030 (10)	scaffold_1:28608917-28609434(-) (10)	NA	Q5ZKQ8	ADP-ribosylation factor-like protein 8A	AT3G49870.1	ADP-ribosylation factor-like A1C 	LOC_Os03g10370.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g015500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.38771.1.A1_a_at	A	A1TS	POPTR_0013s15000	POPTR_0013s15000 (11)	scaffold_13:15055280-15055900(+) (11)	NA	P51398	"28S ribosomal protein S29, mitochondrial"	AT1G16870.1	mitochondrial 28S ribosomal protein S29-related 	LOC_Os07g10300.3	expressed protein	Medtr3g033860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38773.1.A1_at	A	A1TS	POPTR_0001s37830	POPTR_0001s37830 (11)	scaffold_1:36918581-36919275(-) (11)	NA	P46087	Putative ribosomal RNA methyltransferase NOP2	AT4G26600.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g37860.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr3g079840.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.388.1.S1_s_at	A	A1TS	POPTR_0001s36560	POPTR_0001s36560 (11)	scaffold_1:35207219-35207534(+) (11)	NA	Q8RWE8	GDP-L-galactose phosphorylase 1	AT4G26850.1	mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase 	LOC_Os12g08810.1	"VTC2, putative, expressed"	Medtr5g100780.1	"VTC2-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.388.3.S1_s_at	A	A1TS	POPTR_0001s36560	POPTR_0001s36560 (11)	scaffold_1:35205736-35206168(+) (11)	NA	Q8RWE8	GDP-L-galactose phosphorylase 1	AT4G26850.1	mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase 	LOC_Os12g08810.1	"VTC2, putative, expressed"	Medtr5g100780.1	"VTC2-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38847.1.S1_at	A	A1TS	POPTR_0013s04770	POPTR_0013s04770 (11)	scaffold_13:3274835-3275282(-) (11)	NA	NA	NA	AT5G18460.1	Protein of Unknown Function (DUF239) 	LOC_Os08g45170.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr1g093250.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38860.1.S1_at	A	A1TS	POPTR_0013s02510	POPTR_0013s02510 (10)	scaffold_13:1479688-1488631(-) (11)	POPTR_0013s02500 (8)	Q8THJ1	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT1G08980.1	amidase 1 	LOC_Os04g02780.1	"amidase family protein, putative, expressed"	Medtr1g099370.1	Amidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38860.2.S1_a_at	A	A2TS	POPTR_1567s00200	POPTR_1567s00200 (11)//POPTR_0013s02510 (10)	scaffold_13:1481035-1490068(-) (10)//scaffold_13:1489398-1490759(-) (9)//scaffold_1567:834-3553(-) (11)	POPTR_0013s02500 (8)	Q8PXJ1	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT1G08980.1	amidase 1 	LOC_Os04g02780.1	"amidase family protein, putative, expressed"	Medtr1g099370.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.38872.1.S1_at	A	A1TS	POPTR_0016s03120	POPTR_0016s03120 (11)	scaffold_16:1568923-1569768(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G07050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr8g044450.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.38907.1.S1_at	A	A1TS	POPTR_0011s10070	POPTR_0011s10070 (11)	scaffold_11:12541012-12541373(-) (11)	NA	Q6AST1	Homeobox-leucine zipper protein HOX32	AT2G34710.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.1	"START domain containing protein, expressed"	Medtr2g129600.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.38933.1.S1_at	A	A1TS	POPTR_0019s03070	POPTR_0019s03070 (11)	scaffold_19:3091226-3091904(+) (11)	POPTR_0123s00200 (8)//POPTR_0019s02050 (8)	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.38937.2.A1_at	A	A1TS	POPTR_0006s06250	POPTR_0006s06250 (11)	scaffold_6:4445987-4448024(+) (11)	NA	Q949Y3	Bifunctional purple acid phosphatase 26	AT5G34850.1	purple acid phosphatase 26 	LOC_Os06g43640.2	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.38964.1.S1_a_at	A	A2TS	POPTR_0004s01270	POPTR_0004s01270 (11)//POPTR_0985s00200 (11)	scaffold_4:695222-695522(+) (11)//scaffold_985:5030-5330(+) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.38964.2.S1_at	A	A1TS	POPTR_0004s01270	POPTR_0004s01270 (11)	scaffold_4:695534-695627(+) (11)//scaffold_985:5561-5633(+) (9)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.38965.1.A1_at	A	A1MS	POPTR_0003s11230	POPTR_0003s11230 (9)	scaffold_3:12088576-12089483(-) (9)	NA	O22152	Axial regulator YABBY 1	AT2G45190.1	Plant-specific transcription factor YABBY family protein 	LOC_Os02g42950.1	"YABBY domain containing protein, putative, expressed"	Medtr8g106280.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38965.1.A1_s_at	A	A1TS	POPTR_0003s11230	POPTR_0003s11230 (11)	scaffold_3:12088527-12089023(-) (11)	NA	O22152	Axial regulator YABBY 1	AT2G45190.1	Plant-specific transcription factor YABBY family protein 	LOC_Os02g42950.1	"YABBY domain containing protein, putative, expressed"	Medtr8g106280.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38981.1.S1_at	A	A1TS	POPTR_0001s12120	POPTR_0001s12120 (10)	scaffold_1:9391307-9392493(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38981.2.S1_a_at	A	A1TS	POPTR_0001s12120	POPTR_0001s12120 (11)	scaffold_1:9391131-9391242(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.390.1.A1_at	A	A1TA	POPTR_0010s13710	POPTR_0010s13710 (11)	scaffold_10:13488172-13488212(-) (11)	NA	Q54I39	IST1-like protein	AT1G13340.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os03g50210.1	"DUF292 domain containing protein, expressed"	Medtr6g093400.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.390.1.A1_s_at	A	A1TS	POPTR_0008s16670	POPTR_0008s16670 (11)	scaffold_8:11211928-11212182(-) (11)	NA	O48905	"Malate dehydrogenase, cytoplasmic"	AT5G43330.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr1g042850.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.390.3.S1_at	A	A1TS	POPTR_0010s13710	POPTR_0010s13710 (10)	scaffold_10:13487775-13488280(+) (10)	NA	Q54I39	IST1-like protein	AT1G13340.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os03g50210.1	"DUF292 domain containing protein, expressed"	Medtr6g093400.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.390.4.S1_at	A	A2TS	POPTR_0010s08180	POPTR_0010s08180 (11)//POPTR_0904s00200 (11)	scaffold_10:9124410-9125617(+) (11)//scaffold_904:4800-6003(-) (11)	NA	O48905	"Malate dehydrogenase, cytoplasmic"	AT5G43330.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr1g042850.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.390.5.S1_at	A	A1TS	POPTR_0003s12860	POPTR_0003s12860 (11)	scaffold_3:13307444-13308660(+) (11)	NA	Q8TCT7	Signal peptide peptidase-like 2B	AT1G63690.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 2 	LOC_Os02g57710.1	"signal peptide peptidase-like 2B, putative, expressed"	Medtr8g031970.1	"Protease-associated PA; Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.390.6.S1_s_at	A	A1TS	POPTR_0008s16670	POPTR_0008s16670 (11)	scaffold_8:11213401-11213959(-) (11)	NA	O48905	"Malate dehydrogenase, cytoplasmic"	AT5G43330.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr1g042850.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.39028.1.S1_at	A	A1TS	POPTR_0017s00860	POPTR_0017s00860 (11)	scaffold_17:642773-643875(-) (11)	NA	Q2KMM2	Trafficking protein particle complex subunit 1	AT1G51160.2	SNARE-like superfamily protein 	LOC_Os01g33020.2	"trafficking protein particle complex subunit 1, putative, expressed"	Medtr4g144640.1	Sybindin-like protein 	GO:0006888|ER to Golgi vesicle-mediated transport	NA	GO:0005801|cis-Golgi network
PtpAffx.39029.2.S1_a_at	A	A1TS	POPTR_0003s08370	POPTR_0003s08370 (11)	scaffold_3:9750538-9750724(-) (11)	NA	Q8JFY9	Poly(U)-specific endoribonuclease-A	AT4G17100.2	EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998). 	LOC_Os04g45910.1	"placental protein 11 precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39050.2.S1_at	A	A1TS	POPTR_0001s26540	POPTR_0001s26540 (10)	scaffold_1:25520367-25522273(+) (10)	NA	NA	NA	AT5G19855.1	Chaperonin-like RbcX protein 	LOC_Os03g59320.1	expressed protein	Medtr3g080800.2	Chaperonin-like RbcX 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3906.1.S1_a_at	A	A2TS	POPTR_0002s13480	POPTR_0002s13480 (11)//POPTR_0014s04110 (11)	scaffold_14:3272409-3272892(+) (11)//scaffold_2:10012490-10012995(+) (11)	NA	Q8S307	Protein BRASSINAZOLE-RESISTANT 1	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3906.1.S1_at	A	A1TS	POPTR_0014s04110	POPTR_0014s04110 (11)	scaffold_14:3272588-3272747(+) (11)	NA	Q8S307	Protein BRASSINAZOLE-RESISTANT 1	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3906.2.S1_at	A	A1TS	POPTR_0002s13480	POPTR_0002s13480 (10)	scaffold_2:10013040-10013408(+) (10)	NA	Q8S307	Protein BRASSINAZOLE-RESISTANT 1	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39069.1.S1_a_at	A	A1TS	POPTR_0013s13820	POPTR_0013s13820 (11)	scaffold_13:14183437-14183712(-) (11)	POPTR_0013s13700 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39070.1.S1_at	A	A1TS	POPTR_0001s21790	POPTR_0001s21790 (9)	scaffold_1:20285005-20285679(-) (9)	NA	P28493	Pathogenesis-related protein 5	AT1G77700.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os04g59370.1	"thaumatin, putative, expressed"	Medtr5g065310.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39079.1.S1_s_at	A	A1TS	POPTR_0018s11090	POPTR_0018s11090 (11)	scaffold_18:11891247-11891708(+) (11)	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os02g08270.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39084.1.S1_at	A	A1TS	POPTR_0002s11450	POPTR_0002s11450 (9)	scaffold_2:8494326-8496632(-) (9)	NA	Q06538	Uncharacterized membrane protein YLR241W	AT1G58520.1	"lipases;hydrolases, acting on ester bonds "	LOC_Os12g43720.1	"early-responsive to dehydration protein-related, putative, expressed"	Medtr6g013380.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.39091.1.S1_at	A	A1TS	POPTR_0010s10440	POPTR_0010s10440 (11)	scaffold_10:10947744-10948043(-) (11)	POPTR_0008s14670 (6)	Q8W4I4	Potassium transporter 6	AT1G70300.1	K+ uptake permease 6 	LOC_Os06g42030.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.39114.1.S1_at	A	A1TS	POPTR_0018s06320	POPTR_0018s06320 (11)	scaffold_18:6135930-6137613(+) (11)	NA	Q93YV6	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform	AT5G25510.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os05g48150.1	"transposon protein, putative, unclassified, expressed"	Medtr8g118690.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.3913.1.A1_s_at	A	A1TS	POPTR_0012s13850	POPTR_0012s13850 (11)	scaffold_12:13821634-13822124(+) (11)	NA	Q0VFE3	Post-GPI attachment to proteins factor 3	AT1G16560.3	Per1-like family protein 	LOC_Os05g13330.1	"per1-like family protein, putative, expressed"	Medtr6g089390.1	Per1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3913.2.A1_at	A	A1MS	POPTR_0012s13850	POPTR_0012s13850 (10)	scaffold_12:13819799-13820394(+) (10)	NA	Q0VFE3	Post-GPI attachment to proteins factor 3	AT1G16560.3	Per1-like family protein 	LOC_Os05g13330.1	"per1-like family protein, putative, expressed"	Medtr6g089390.1	Per1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3913.3.A1_at	A	A1TS	POPTR_0015s13810	POPTR_0015s13810 (10)	scaffold_15:13590219-13590641(+) (10)	NA	Q0VFE3	Post-GPI attachment to proteins factor 3	AT1G16560.3	Per1-like family protein 	LOC_Os05g13330.1	"per1-like family protein, putative, expressed"	Medtr6g089390.1	Per1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3913.4.S1_at	A	A1TS	POPTR_0015s13810	POPTR_0015s13810 (10)	scaffold_15:13587360-13588737(+) (10)	NA	Q0VFE3	Post-GPI attachment to proteins factor 3	AT1G16560.3	Per1-like family protein 	LOC_Os05g13330.1	"per1-like family protein, putative, expressed"	Medtr6g089390.1	Per1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39130.1.S1_at	A	A1TS	POPTR_0001s32500	POPTR_0001s32500 (9)	scaffold_1:30812271-30812962(-) (9)	NA	O04933	Sucrose-phosphate synthase 2	AT1G04920.1	sucrose phosphate synthase 3F 	LOC_Os01g69030.4	"sucrose-phosphate synthase, putative, expressed"	Medtr5g098550.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.39134.1.S1_at	A	A1TS	POPTR_0006s02550	POPTR_0006s02550 (11)	scaffold_6:1656038-1656245(+) (11)	NA	Q9LFT8	Cyclin-dependent kinase C-1	AT5G10270.1	cyclin-dependent kinase C;1 	LOC_Os01g72790.1	"cyclin-dependent kinase, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.39134.2.S1_s_at	A	A1TS	POPTR_0006s02550	POPTR_0006s02550 (11)	scaffold_6:1654019-1655355(+) (11)	NA	Q9LFT8	Cyclin-dependent kinase C-1	AT5G10270.1	cyclin-dependent kinase C;1 	LOC_Os01g72790.1	"cyclin-dependent kinase, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.3914.1.S1_a_at	A	A2TS	POPTR_0005s02520	POPTR_0005s02520 (11)//POPTR_0013s01750 (11)	scaffold_13:996000-996516(-) (11)//scaffold_5:1612834-1613690(-) (11)	NA	Q9SEI2	26S protease regulatory subunit 6A homolog A	AT3G05530.1	regulatory particle triple-A ATPase 5A 	LOC_Os06g07630.1	"26S protease regulatory subunit 6A, putative, expressed"	Medtr1g099840.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.3914.1.S1_at	A	A1TS	POPTR_0005s02520	POPTR_0005s02520 (11)	scaffold_5:1612652-1613429(-) (11)	NA	Q9SEI2	26S protease regulatory subunit 6A homolog A	AT3G05530.1	regulatory particle triple-A ATPase 5A 	LOC_Os06g07630.1	"26S protease regulatory subunit 6A, putative, expressed"	Medtr1g099840.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.3914.2.S1_at	A	A1TS	POPTR_0013s01750	POPTR_0013s01750 (11)	scaffold_13:995913-996455(-) (11)	NA	Q9SEI2	26S protease regulatory subunit 6A homolog A	AT3G05530.1	regulatory particle triple-A ATPase 5A 	LOC_Os06g07630.1	"26S protease regulatory subunit 6A, putative, expressed"	Medtr1g099840.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.39162.1.S1_s_at	A	A1TS	POPTR_0008s04500	POPTR_0008s04500 (11)	scaffold_8:2557209-2557568(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3918.1.A1_at	A	A1TS	POPTR_0005s18100	POPTR_0005s18100 (9)	scaffold_5:16178870-16179374(+) (9)	NA	NA	NA	AT3G50370.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). 	LOC_Os03g27820.1	expressed protein	CU571152_13.1	hypothetical protein CU571152.5 45352-54530 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39188.1.A1_at	A	A1TS	POPTR_0010s18140	POPTR_0010s18140 (11)	scaffold_10:16502025-16502541(-) (11)	NA	NA	NA	AT1G79420.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39197.1.S1_at	A	A1TS	POPTR_0004s01840	POPTR_0004s01840 (11)	scaffold_4:1118681-1119076(-) (11)	NA	O48928	Cytochrome P450 77A3	AT1G11600.1	"cytochrome P450, family 77, subfamily B, polypeptide 1 "	LOC_Os06g46680.1	"cytochrome P450, putative, expressed"	Medtr8g146430.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.39199.1.S1_at	A	A1TS	POPTR_0006s09780	POPTR_0006s09780 (11)	scaffold_6:7183907-7184274(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39208.1.S1_at	A	A1TS	POPTR_0002s10530	POPTR_0002s10530 (11)	scaffold_2:7613472-7615228(-) (11)	NA	O00189	AP-4 complex subunit mu-1	AT4G24550.2	Clathrin adaptor complexes medium subunit family protein 	LOC_Os07g42810.2	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g075050.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.39212.1.S1_at	A	A1TS	POPTR_0015s11100	POPTR_0015s11100 (11)	scaffold_15:11769920-11771037(-) (11)	NA	Q8LFW6	Squamosa promoter-binding-like protein 13	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.39212.2.S1_s_at	A	A1TS	POPTR_0012s10260	POPTR_0012s10260 (11)	scaffold_12:11072807-11073890(-) (11)	NA	Q8LFW6	Squamosa promoter-binding-like protein 13	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.39214.1.A1_at	A	A3TS	POPTR_0001s45160	POPTR_0001s45190 (11)//POPTR_0001s45180 (11)//POPTR_0001s45160 (11)	scaffold_1:40209170-40209405(+) (11)//scaffold_1:45547066-45547319(+) (10)//scaffold_1:45576322-45576577(+) (11)//scaffold_1:45600289-45600528(-) (11)//scaffold_1:45624189-45624424(+) (11)//scaffold_1:45643027-45643266(+) (11)//scaffold_65:27556-27809(+) (10)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140400.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.39217.1.A1_s_at	A	A2TS	POPTR_0012s14430	POPTR_0015s14480 (11)//POPTR_0012s14430 (11)	scaffold_12:14324981-14325552(-) (11)//scaffold_15:14053387-14053940(-) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G51560.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.39223.1.A1_at	A	A1TS	POPTR_0002s05610	POPTR_0002s05610 (11)	scaffold_2:3680847-3681499(+) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT2G43040.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os12g37780.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr5g026970.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39227.1.S1_s_at	A	A1TS	POPTR_0003s01800	POPTR_0003s01800 (11)	scaffold_3:1666143-1666474(+) (11)	NA	Q9CWK3	CD2 antigen cytoplasmic tail-binding protein 2	AT5G09390.1	CD2-binding protein-related 	LOC_Os09g20590.1	"CD2-binding protein-related, putative, expressed"	Medtr2g008850.1	"CD2-binding protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39240.1.S1_at	A	A1MS	POPTR_0009s10320	POPTR_0009s10320 (9)	scaffold_9:8890983-8891016(-) (9)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT1G49740.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os04g35100.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39240.1.S1_s_at	A	A1TS	POPTR_0009s10320	POPTR_0009s10320 (11)	scaffold_9:8891123-8891680(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT1G49740.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os04g35100.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39272.1.S1_at	A	A1TS	POPTR_0012s02560	POPTR_0012s02560 (10)	scaffold_12:2104923-2105566(+) (10)	NA	O95714	E3 ubiquitin-protein ligase HERC2	AT3G26100.2	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os12g18650.4	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr3g102750.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39306.1.S1_at	A	A1TS	POPTR_0012s13810	POPTR_0012s13810 (10)	scaffold_12:13802940-13803279(-) (10)	NA	NA	NA	AT5G43050.1	Protein of unknown function (DUF565) 	LOC_Os04g41150.1	"DUF565 domain containing protein, putative, expressed"	Medtr3g080700.1	Protein of unknown function DUF565 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39310.1.A1_s_at	A	A1TS	POPTR_0003s15760	POPTR_0003s15760 (11)	scaffold_3:15474754-15475311(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39311.1.A1_s_at	A	A1TS	POPTR_0003s13390	POPTR_0003s13390 (11)	scaffold_3:13791948-13792443(+) (11)	NA	Q9LS46	Aluminum-activated malate transporter 9	AT3G18440.1	aluminum-activated malate transporter 9 	LOC_Os01g12210.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39332.1.A1_s_at	A	A1TS	POPTR_0004s05640	POPTR_0004s05640 (10)	scaffold_4:4404875-4405405(+) (10)	NA	P43297	Cysteine proteinase RD21a	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os05g43230.1	"oryzain alpha chain precursor, putative, expressed"	Medtr1g068320.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.39343.1.S1_at	A	A1TS	POPTR_0002s08270	POPTR_0002s08270 (11)	scaffold_2:5755031-5757023(-) (11)	NA	O80366	Two-component response regulator ARR9	AT3G57040.1	response regulator 9 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g039500.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.39365.1.S1_at	A	A1TS	POPTR_0002s04760	POPTR_0002s04760 (9)	scaffold_2:3006457-3006934(+) (9)	NA	NA	NA	AT4G32440.1	Plant Tudor-like RNA-binding protein 	LOC_Os02g11000.2	"agenet domain containing protein, putative, expressed"	Medtr8g119470.1	ENT; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.39378.1.S1_at	A	A1TS	POPTR_0011s04700	POPTR_0011s04700 (11)	scaffold_11:4679139-4679568(-) (11)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os01g58100.1	"polyphenol oxidase, putative"	Medtr4g042530.1	Di-copper centre-containing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39381.1.A1_at	A	A1TS	POPTR_0003s10520	POPTR_0003s10520 (11)	scaffold_3:11454799-11454918(-) (11)	NA	A8MS41	Carbon catabolite repressor protein 4 homolog 4	AT1G31500.1	DNAse I-like superfamily protein 	LOC_Os05g32330.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr5g026430.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39381.1.A1_s_at	A	A1TS	POPTR_0003s10520	POPTR_0003s10520 (11)	scaffold_3:11455083-11455287(-) (11)	NA	A8MS41	Carbon catabolite repressor protein 4 homolog 4	AT1G31500.1	DNAse I-like superfamily protein 	LOC_Os05g32330.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr5g026430.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39391.1.S1_a_at	A	A1TS	POPTR_0007s10060	POPTR_0007s10060 (9)	scaffold_7:9796940-9797051(-) (9)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT5G67385.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g10880.1	"BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr5g016050.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.39391.1.S1_at	A	A1TS	POPTR_0007s10060	POPTR_0007s10060 (11)	scaffold_7:9796603-9796950(-) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT5G67385.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g10880.1	"BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr5g016050.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.3940.1.S1_at	A	A1TS	POPTR_0017s09890	POPTR_0017s09890 (11)	scaffold_17:8606800-8607785(+) (11)	NA	Q9FMT4	SWI/SNF complex component SNF12 homolog	AT5G14170.1	SWIB/MDM2 domain superfamily protein 	LOC_Os04g31320.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr8g109310.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39404.1.S1_at	A	A1TA	POPTR_0016s11630	POPTR_0016s11630 (11)	scaffold_16:10847021-10847164(+) (11)	NA	NA	NA	AT2G37960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g01008.1	expressed protein	Medtr4g015560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39416.1.A1_at	A	A1TS	POPTR_0002s06330	POPTR_0002s06330 (10)	scaffold_2:4218169-4219711(-) (10)	NA	NA	NA	AT1G22750.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g38320.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39424.1.S1_at	A	A1TS	POPTR_0011s16040	POPTR_0011s16040 (11)	scaffold_11:18014959-18015654(+) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G14350.2	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.39438.1.S1_at	A	A1TS	POPTR_0001s34940	POPTR_0001s34940 (9)	scaffold_1:33195996-33198051(+) (9)	NA	NA	NA	AT3G01510.1	like SEX4 1 	LOC_Os08g29160.1	"5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.39448.1.A1_at	A	A1TS	POPTR_0003s04010	POPTR_0003s04010 (9)	scaffold_3:4629665-4629743(-) (9)	NA	O04373	IAA-amino acid hydrolase ILR1-like 4	AT1G51760.1	peptidase M20/M25/M40 family protein 	LOC_Os01g37960.1	"hydrolase, putative, expressed"	Medtr2g121800.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.39450.1.S1_a_at	A	A1TS	POPTR_0005s08110	POPTR_0005s08110 (11)	scaffold_5:5579864-5580080(-) (11)	NA	Q8WVT3	Tetratricopeptide repeat protein 15	AT4G39820.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g34540.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr3g101140.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39452.1.A1_at	A	A1TS	POPTR_0003s07710	POPTR_0003s07710 (10)	scaffold_3:9230686-9231168(-) (10)	NA	NA	NA	AT4G17430.1	O-fucosyltransferase family protein 	LOC_Os10g41180.1	expressed protein	Medtr4g157630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39455.1.S1_s_at	A	A1TS	POPTR_0007s06430	POPTR_0007s06430 (11)	scaffold_7:4750396-4750879(-) (11)	NA	Q0WR59	Probable inactive receptor kinase At5g10020	AT5G10020.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g43350.1	expressed protein	Medtr3g145010.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.39457.1.A1_a_at	A	A1TS	POPTR_0014s17320	POPTR_0014s17320 (11)	scaffold_14:13446127-13446493(-) (11)	NA	Q9Y305	"Acyl-coenzyme A thioesterase 9, mitochondrial"	AT5G48370.2	Thioesterase/thiol ester dehydrase-isomerase superfamily protein 	LOC_Os09g34190.1	"acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed"	Medtr7g092460.1	"Acyl-coenzyme A thioesterase 9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39462.1.S1_at	A	A1TS	POPTR_0016s05070	POPTR_0016s05070 (11)	scaffold_16:3070286-3070635(-) (11)	NA	NA	NA	AT2G42260.1	uv-b-insensitive 4 	NA	NA	Medtr7g111230.1	UVI4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39465.1.A1_s_at	A	A2TS	POPTR_0005s08190	POPTR_0005s08190 (11)//POPTR_0007s06010 (9)	scaffold_5:5637274-5638566(-) (11)//scaffold_7:4154588-4155843(-) (9)	NA	NA	NA	AT2G22125.1	binding 	LOC_Os11g08090.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39470.1.S1_s_at	A	A1TS	POPTR_0017s11750	POPTR_0017s11750 (11)	scaffold_17:11527476-11528148(+) (11)	NA	Q9LJX0	ABC transporter B family member 19	AT3G28860.1	ATP binding cassette subfamily B19 	LOC_Os04g38570.1	"multidrug resistance protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.39475.1.A1_at	A	A1TS	POPTR_0007s15160	POPTR_0007s15160 (11)	scaffold_7:14783463-14784108(+) (11)	NA	NA	NA	AT3G13062.2	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os02g26860.1	"START domain containing protein, putative, expressed"	Medtr4g163310.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39478.1.A1_at	A	A1TS	POPTR_0004s04030	POPTR_0004s04030 (11)	scaffold_4:2866388-2866795(-) (11)	NA	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	AT3G09010.1	Protein kinase superfamily protein 	LOC_Os04g58250.1	"protein kinase, putative, expressed"	Medtr2g014900.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.39479.1.A1_at	A	A1TS	POPTR_0014s09140	POPTR_0014s09140 (11)	scaffold_14:6778593-6779656(+) (11)	NA	NA	NA	AT3G61670.1	Protein of unknown function (DUF3133) 	LOC_Os02g15820.1	"extra-large G-protein-related, putative, expressed"	Medtr5g076870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39491.1.S1_at	A	A1TS	POPTR_0001s42940	POPTR_0001s42940 (11)	scaffold_1:43029954-43030418(+) (11)	NA	Q6Y2X3	DnaJ homolog subfamily C member 14	AT1G79030.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g41820.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g077040.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.39521.1.A1_at	A	A1TS	POPTR_0009s10570	POPTR_0009s10570 (9)	scaffold_9:9039159-9039530(-) (9)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39529.1.A1_s_at	A	A1MS	POPTR_0005s22530	POPTR_0005s22530 (11)	scaffold_5:21454245-21454336(-) (11)	NA	NA	NA	AT3G59090.1	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os01g54784.1	expressed protein	Medtr4g165460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39545.1.A1_at	A	A1TS	POPTR_0018s07580	POPTR_0018s07580 (10)	scaffold_18:7963938-7964136(-) (10)	NA	NA	NA	AT4G32960.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os06g05720.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39547.1.A1_a_at	A	A2TS	POPTR_0012s04080	POPTR_0015s05020 (11)//POPTR_0012s04080 (11)	scaffold_12:3300074-3300303(+) (11)//scaffold_15:5255784-5256014(-) (11)	NA	O35704	Serine palmitoyltransferase 1	AT4G36480.2	long-chain base1 	LOC_Os02g56300.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.39547.1.A1_at	A	A1TS	POPTR_0012s04080	POPTR_0012s04080 (11)	scaffold_12:3300046-3300643(+) (11)	NA	O35704	Serine palmitoyltransferase 1	AT4G36480.2	long-chain base1 	LOC_Os02g56300.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.39547.2.S1_at	A	A1TS	POPTR_0015s05020	POPTR_0015s05020 (11)	scaffold_15:5255470-5256044(-) (11)	NA	O35704	Serine palmitoyltransferase 1	AT4G36480.2	long-chain base1 	LOC_Os02g56300.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.3955.1.S1_at	A	A2TS	POPTR_0008s02190	POPTR_0008s02190 (11)//POPTR_0008s02210 (11)	scaffold_8:1046539-1047257(-) (11)//scaffold_8:1054993-1055711(-) (11)	NA	NA	NA	AT2G36290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g32970.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3955.2.S1_at	A	A1TS	POPTR_0008s02230	POPTR_0008s02230 (11)	scaffold_8:1065666-1066716(-) (11)	NA	NA	NA	AT2G36290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g32970.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3955.3.S1_a_at	A	A2TS	POPTR_0008s02190	POPTR_0008s02190 (11)//POPTR_0008s02210 (11)	scaffold_8:1047803-1048126(-) (11)//scaffold_8:1056232-1056556(-) (11)	NA	NA	NA	AT2G36290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g32970.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3955.3.S1_at	A	A1TS	POPTR_0008s02210	POPTR_0008s02210 (11)	scaffold_8:1048216-1057279(-) (11)	NA	NA	NA	AT2G36290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g32970.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39580.1.S1_at	A	A1TS	POPTR_0010s05200	POPTR_0010s05200 (11)	scaffold_10:6641709-6642155(-) (11)	NA	NA	NA	AT1G10650.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os02g03760.2	expressed protein	Medtr1g024220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39580.2.S1_a_at	A	A1TS	POPTR_0010s05200	POPTR_0010s05200 (11)	scaffold_10:6642305-6643990(-) (11)	NA	NA	NA	AT1G10650.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os02g03760.2	expressed protein	Medtr1g024220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39584.1.S1_at	A	A1TS	POPTR_0001s19420	POPTR_0001s19420 (11)	scaffold_1:17098677-17099682(+) (11)	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr2g126300.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39590.1.S1_s_at	A	A1TS	POPTR_0015s06650	POPTR_0015s06650 (11)	scaffold_15:7612429-7613545(-) (11)	NA	Q8ZKF6	Acetyl-coenzyme A synthetase	AT5G23050.1	acyl-activating enzyme 17 	LOC_Os09g21230.1	"AMP-binding enzyme, putative, expressed"	Medtr4g134030.1	"AMP-dependent synthetase and ligase; Legume lectin, alpha "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.39597.1.S1_s_at	A	A1TS	POPTR_0002s12130	POPTR_0002s12130 (11)	scaffold_2:9003782-9004264(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.39603.1.S1_at	A	A1TS	POPTR_0001s00320	POPTR_0001s00320 (9)	scaffold_1:188823-189111(-) (9)	NA	Q9SXD5	Flavin-containing monooxygenase FMO GS-OX-like 3	AT1G62620.1	Flavin-binding monooxygenase family protein 	LOC_Os10g40570.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr5g012290.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39611.1.A1_at	A	A1TS	POPTR_0008s00700	POPTR_0008s00700 (11)	scaffold_8:319868-320396(-) (11)	NA	NA	NA	AT1G51560.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os08g40570.1	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.39613.1.S1_s_at	A	A1TS	POPTR_0010s16510	POPTR_0010s16510 (11)	scaffold_10:15445115-15445244(-) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39613.2.S1_at	A	A1MS	POPTR_0010s16510	POPTR_0010s16510 (11)	scaffold_10:15445320-15445541(-) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39620.1.S1_at	A	A1TS	POPTR_0018s07060	POPTR_0018s07060 (10)	scaffold_18:7228677-7232308(+) (10)	NA	Q9SLD2	Diacylglycerol O-acyltransferase 1	AT2G19450.1	membrane bound O-acyl transferase (MBOAT) family protein 	LOC_Os06g36800.1	"O-acyltransferase, putative, expressed"	Medtr2g046560.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39649.1.S1_s_at	A	A1TS	POPTR_0002s15580	POPTR_0002s15580 (11)	scaffold_2:11627248-11627488(+) (11)	NA	Q9ZPH9	Probable methyltransferase PMT15	AT4G00750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.39673.1.S1_a_at	A	A1TS	POPTR_0012s12090	POPTR_0012s12090 (11)	scaffold_12:12378283-12378317(+) (11)	NA	Q9SA16	Protein PHLOEM PROTEIN 2-LIKE A9	AT1G10155.1	phloem protein 2-A10 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39678.1.S1_at	A	A1TS	POPTR_0013s01130	POPTR_0013s01130 (11)	scaffold_13:619210-619364(+) (11)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g15010.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.39679.1.A1_s_at	A	A1TS	POPTR_0016s00360	POPTR_0016s00360 (11)	scaffold_16:77551-78503(-) (11)	NA	Q93ZX7	Probable galacturonosyltransferase 4	AT5G47780.1	galacturonosyltransferase 4 	LOC_Os08g23780.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g033340.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.3969.1.S1_s_at	A	A1TS	POPTR_0014s16150	POPTR_0014s16150 (10)	scaffold_14:12214622-12215720(-) (10)	POPTR_0002s21990 (8)	Q9BYX2	TBC1 domain family member 2A	AT3G07890.2	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os08g25010.1	"TBC domain containing protein, expressed"	Medtr5g105820.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.39703.1.S1_at	A	A2TS	POPTR_0002s11780	POPTR_0013s09110 (10)//POPTR_0002s11780 (10)	scaffold_13:8663332-8665193(+) (10)//scaffold_2:8725752-8727615(-) (10)	NA	Q3ZBM7	tRNA 2'-phosphotransferase 1	AT2G45330.2	"RNA 2'-phosphotransferase, Tpt1 / KptA family "	LOC_Os06g04300.1	"tRNA 2-phosphotransferase 1, putative, expressed"	Medtr4g024710.1	Phosphotransferase KptA/Tpt1 	"GO:0044260|cellular macromolecule metabolic process||GO:0006388|""tRNA splicing, via endonucleolytic cleavage and ligation"""	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	NA
PtpAffx.39713.1.A1_at	A	A1MS	POPTR_0010s14640	POPTR_0010s14640 (10)	scaffold_10:14176769-14177212(+) (10)	NA	NA	NA	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g16420.1	"amino acid transporter, putative, expressed"	Medtr8g077220.1	"amino acid transporter-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39724.1.S1_at	A	A1TS	POPTR_0002s24800	POPTR_0002s24800 (11)	scaffold_2:22054474-22054912(-) (11)	NA	O94260	Putative G3BP-like protein	AT3G25150.2	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os04g30430.1	"nuclear transport factor 2, putative, expressed"	Medtr7g062040.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.39725.1.S1_at	A	A1TS	POPTR_0008s19620	POPTR_0008s19620 (11)	scaffold_8:13519540-13522024(+) (11)	NA	NA	NA	AT1G59840.2	cofactor assembly of complex C 	LOC_Os04g55690.1	"CCB4, putative, expressed"	Medtr5g038070.1	"cytochrome c biogenesis protein, putative, Ccb2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3973.1.A1_at	A	A1TS	POPTR_0005s16680	POPTR_0005s16680 (11)	scaffold_5:13676091-13677183(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT1G36070.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g26870.1	"WD-40 repeat family protein, putative, expressed"	CU651566_11.1	"Uncharacterized WD repeat-containing protein C2A9.03, related CU651566.9 58826-64265 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3973.2.S1_at	A	A1TS	POPTR_0005s16680	POPTR_0005s16680 (10)	scaffold_5:13678487-13678800(+) (10)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT1G36070.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g26870.1	"WD-40 repeat family protein, putative, expressed"	CU651566_11.1	"Uncharacterized WD repeat-containing protein C2A9.03, related CU651566.9 58826-64265 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39736.2.A1_a_at	A	A3TS	POPTR_0008s18790	POPTR_0008s18810 (11)//POPTR_0008s18790 (11)//POPTR_0008s18870 (11)	scaffold_8:12819922-12820318(-) (11)//scaffold_8:12852771-12853167(-) (11)//scaffold_8:12882699-12883095(-) (11)	NA	Q9LIP4	Cytochrome P450 71B36	AT3G26320.1	"cytochrome P450, family 71, subfamily B, polypeptide 36 "	LOC_Os03g63310.1	"cytochrome P450 71E1, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.39736.3.A1_a_at	A	A1TS	POPTR_0008s18810	POPTR_0008s18810 (11)	scaffold_8:12852590-12852721(-) (11)	NA	Q9LIP4	Cytochrome P450 71B36	AT3G26320.1	"cytochrome P450, family 71, subfamily B, polypeptide 36 "	LOC_Os03g63310.1	"cytochrome P450 71E1, putative, expressed"	Medtr1g028100.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.39736.3.A1_at	A	A1TS	POPTR_0008s18810	POPTR_0008s18810 (11)	scaffold_8:12852457-12852688(-) (11)	NA	Q9LIP4	Cytochrome P450 71B36	AT3G26320.1	"cytochrome P450, family 71, subfamily B, polypeptide 36 "	LOC_Os03g63310.1	"cytochrome P450 71E1, putative, expressed"	Medtr1g028100.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.39752.1.A1_s_at	A	A1TS	POPTR_0018s03000	POPTR_0018s03000 (11)	scaffold_18:2639261-2639669(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g48860.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3977.1.S1_s_at	A	A1TS	POPTR_0015s13880	POPTR_0015s13880 (11)	scaffold_15:13631949-13634306(+) (11)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.3977.2.S1_at	A	A1MS	POPTR_0012s13920	POPTR_0012s13920 (9)	scaffold_12:13860898-13861252(+) (9)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.39778.1.A1_at	A	A1TS	POPTR_0008s16110	POPTR_0008s16110 (11)	scaffold_8:10767564-10767816(+) (11)	NA	Q38832	Auxin-responsive protein IAA14	AT4G14550.1	indole-3-acetic acid inducible 14 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.39799.1.A1_at	A	A1TS	POPTR_0001s45970	POPTR_0001s45970 (11)	scaffold_1:46475260-46475734(-) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os08g40280.1	"lectin-like protein kinase, putative, expressed"	Medtr5g024990.1	Concanavalin A-like lectin/glucanase; Protein kinase-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.3980.1.S1_s_at	A	A1TS	POPTR_0008s10050	POPTR_0008s10050 (11)	scaffold_8:6267794-6268100(+) (11)	NA	P29344	"30S ribosomal protein S1, chloroplastic"	AT5G30510.1	ribosomal protein S1 	LOC_Os03g20100.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.3980.2.A1_at	A	A1TS	POPTR_0010s16010	POPTR_0010s16010 (11)	scaffold_10:15079613-15079852(-) (11)	NA	P29344	"30S ribosomal protein S1, chloroplastic"	AT5G30510.1	ribosomal protein S1 	LOC_Os03g20100.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.3980.3.A1_at	A	A1TS	POPTR_0010s16010	POPTR_0010s16010 (11)	scaffold_10:15082467-15082637(-) (11)	NA	P29344	"30S ribosomal protein S1, chloroplastic"	AT5G30510.1	ribosomal protein S1 	LOC_Os03g20100.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.39826.1.S1_at	A	A1TS	POPTR_0004s17770	POPTR_0004s17770 (11)	scaffold_4:17827436-17827925(+) (11)	NA	P34024	1-phosphatidylinositol phosphodiesterase	AT4G38690.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os09g36520.1	"ki1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39846.1.S1_s_at	A	A2TS	POPTR_0005s14790	POPTR_0005s14790 (11)//POPTR_0005s14780 (10)	scaffold_5:11724300-11729402(+) (11)//scaffold_5:11729033-11729068(+) (10)//scaffold_5:11740514-11740882(+) (9)	POPTR_0005s14810 (8)	Q9FKR0	Probable S-adenosylmethionine-dependent methyltransferase At5g38780	AT1G15125.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g56950.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.3985.1.S1_at	A	A1TS	POPTR_0012s12000	POPTR_0012s12000 (11)	scaffold_12:12338881-12339561(-) (11)	NA	Q9MAS5	Putative vesicle-associated membrane protein 726	AT1G04760.1	vesicle-associated membrane protein 726 	LOC_Os03g06960.1	"vesicle-associated membrane protein, putative, expressed"	Medtr2g034380.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.39855.1.S1_at	A	A1TS	POPTR_0002s04310	POPTR_0002s04310 (11)	scaffold_2:2696907-2697442(-) (11)	NA	O23487	Transcription factor bHLH3	AT4G16430.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g50940.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.39866.1.S1_at	A	A1TS	POPTR_0001s13330	POPTR_0001s13330 (10)	scaffold_1:10425931-10426066(+) (10)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT5G21090.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g59440.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr7g005120.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.3988.1.A1_at	A	A1TS	POPTR_0007s04370	POPTR_0007s04370 (11)	scaffold_7:2706026-2706765(+) (11)	NA	Q9SS90	E3 ubiquitin-protein ligase RGLG1	AT5G63970.2	Copine (Calcium-dependent phospholipid-binding protein) family 	LOC_Os01g73000.2	"copine, putative, expressed"	Medtr3g143100.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3989.1.S1_at	A	A1TS	POPTR_0008s05050	POPTR_0008s05050 (9)	scaffold_8:2934616-2935159(+) (11)	NA	O82598	Aquaporin TIP1-3	AT4G01470.1	tonoplast intrinsic protein 1;3 	LOC_Os01g74450.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.3989.1.S1_x_at	A	A1TS	POPTR_0008s05050	POPTR_0008s05050 (10)	scaffold_8:2934616-2935154(+) (11)	NA	O82598	Aquaporin TIP1-3	AT4G01470.1	tonoplast intrinsic protein 1;3 	LOC_Os01g74450.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.3989.2.S1_at	A	A1TS	POPTR_0010s21700	POPTR_0010s21700 (11)	scaffold_10:18878953-18879513(-) (11)	NA	O82598	Aquaporin TIP1-3	AT4G01470.1	tonoplast intrinsic protein 1;3 	LOC_Os01g74450.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.399.1.A1_at	A	A1TS	POPTR_0011s14610	POPTR_0011s14610 (11)	scaffold_11:16961428-16961963(+) (11)	NA	NA	NA	AT3G12930.1	Lojap-related protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.399.2.S1_a_at	A	A2TS	POPTR_0011s14610	POPTR_0011s14610 (11)//POPTR_0001s46280 (10)	scaffold_1:46674908-46676097(-) (10)//scaffold_11:16959794-16960990(+) (11)	NA	NA	NA	AT3G12930.1	Lojap-related protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39908.1.S1_a_at	A	A2TS	POPTR_0008s19590	POPTR_0008s19590 (11)//POPTR_0010s04890 (11)	scaffold_10:6069406-6069531(-) (11)//scaffold_8:13503419-13503544(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os02g12580.1	"OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed"	Medtr5g038210.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.39908.1.S1_at	A	A1TS	POPTR_0010s04890	POPTR_0010s04890 (11)	scaffold_10:6068996-6069411(-) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os02g12580.1	"OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed"	Medtr5g038210.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.39908.2.S1_at	A	A1TS	POPTR_0008s19590	POPTR_0008s19590 (11)	scaffold_8:13503539-13503919(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os02g12580.1	"OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed"	Medtr5g038210.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.39908.3.S1_a_at	A	A2TS	POPTR_0010s04890	POPTR_0010s04890 (11)//POPTR_0008s19590 (10)	scaffold_10:6070482-6072329(-) (11)//scaffold_8:13500555-13502503(+) (10)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os02g12580.1	"OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed"	Medtr5g038210.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.39916.1.A1_at	A	A1TS	POPTR_0015s03930	POPTR_0015s03930 (10)	scaffold_15:3844298-3844528(+) (10)	NA	Q9LJQ5	Reticulon-like protein B9	AT3G18260.1	Reticulon family protein 	LOC_Os05g47690.1	"reticulon domain containing protein, putative, expressed"	Medtr1g126140.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.39946.1.S1_at	A	A1TS	POPTR_0017s04600	POPTR_0017s04600 (11)	scaffold_17:3532663-3532934(+) (11)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G36160.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.39989.1.S1_at	A	A1TS	POPTR_0005s11000	POPTR_0005s11000 (11)	scaffold_5:7932890-7933646(+) (11)	NA	Q8GT75	NEP1-interacting protein 1	AT4G35840.1	RING/U-box superfamily protein 	LOC_Os10g39770.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr5g022920.1	"Zinc finger, RING-type "	NA	NA	GO:0019867|outer membrane
PtpAffx.3999.1.S1_a_at	A	A1TS	POPTR_0007s12460	POPTR_0007s12460 (11)	scaffold_7:12776475-12777652(+) (11)	NA	P42774	G-box-binding factor 1	AT4G36730.1	G-box binding factor 1 	LOC_Os02g03580.3	"transcription factor, putative, expressed"	Medtr8g093630.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.39996.1.A1_at	A	A1TS	POPTR_0015s15020	POPTR_0015s15020 (10)	scaffold_15:14385073-14386664(-) (10)	NA	P42856	14 kDa zinc-binding protein	AT1G31160.1	HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 	LOC_Os06g45660.1	"histidine triad family protein, putative, expressed"	Medtr4g114380.1	Histidine triad (HIT) protein; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4.1.A1_a_at	A	A1TS	POPTR_0009s14390	POPTR_0009s14390 (9)	scaffold_9:11279541-11279587(-) (9)//scaffold_9:11296277-11296323(-) (9)	NA	P16579	Acidic endochitinase WIN6	AT3G12500.1	basic chitinase 	LOC_Os05g33140.1	"CHIT5 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.4.4.A1_a_at	A	A2TS	POPTR_0009s14390	POPTR_0009s14390 (11)//POPTR_0790s00200 (9)	scaffold_790:1729-1792(-) (9)//scaffold_9:11280882-11280947(-) (11)	POPTR_0009s14430 (7)//POPTR_0009s14400 (7)	P16579	Acidic endochitinase WIN6	AT3G12500.1	basic chitinase 	LOC_Os05g33140.1	"CHIT5 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.40002.1.A1_at	A	A1TS	POPTR_0022s00500	POPTR_0022s00500 (10)	scaffold_22:192618-192949(+) (10)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.40037.1.A1_at	A	A1TS	POPTR_0005s23100	POPTR_0005s23100 (11)	scaffold_5:21933072-21933235(-) (11)	NA	NA	NA	AT4G02800.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 3209 Blast hits to 2720 proteins in 308 species: Archae - 13; Bacteria - 213; Metazoa - 1207; Fungi - 247; Plants - 183; Viruses - 21; Other Eukaryotes - 1325 (source: NCBI BLink). 	LOC_Os04g15800.1	expressed protein	Medtr7g080690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40037.1.A1_s_at	A	A2TS	POPTR_0002s05400	POPTR_0005s23100 (11)//POPTR_0002s05400 (11)	scaffold_2:3519312-3519864(+) (11)//scaffold_5:21933049-21933565(-) (11)	NA	NA	NA	AT4G02800.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 3209 Blast hits to 2720 proteins in 308 species: Archae - 13; Bacteria - 213; Metazoa - 1207; Fungi - 247; Plants - 183; Viruses - 21; Other Eukaryotes - 1325 (source: NCBI BLink). 	LOC_Os04g15800.1	expressed protein	Medtr7g080690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40045.1.A1_s_at	A	A1TS	POPTR_0004s22720	POPTR_0004s22720 (11)	scaffold_4:21565255-21566782(-) (11)	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G27980.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g01170.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40050.1.S1_at	A	A1TS	POPTR_0008s04850	POPTR_0008s04850 (11)	scaffold_8:2811207-2812085(+) (11)	NA	Q9C8G4	Probable pectate lyase 4	AT3G55140.1	Pectin lyase-like superfamily protein 	LOC_Os01g36620.1	"pectate lyase family protein, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4007.1.S1_a_at	A	A2TS	POPTR_0002s09590	POPTR_0002s09590 (11)//POPTR_0005s17010 (11)	scaffold_2:6874143-6874854(+) (11)//scaffold_5:14048211-14048798(+) (11)	NA	NA	NA	AT1G35780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g36500.1	expressed protein	Medtr3g101680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4007.1.S1_at	A	A1TS	POPTR_0005s17010	POPTR_0005s17010 (11)	scaffold_5:14048230-14049054(+) (11)	NA	NA	NA	AT1G35780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g36500.1	expressed protein	Medtr3g101680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4007.2.S1_at	A	A1TS	POPTR_0002s09590	POPTR_0002s09590 (11)	scaffold_2:6874160-6875184(+) (11)	NA	NA	NA	AT1G35780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g36500.1	expressed protein	Medtr3g101680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40080.1.S1_s_at	A	A1TS	POPTR_0001s37260	POPTR_0001s37260 (11)	scaffold_1:36225007-36225515(+) (11)	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.40088.1.A1_at	A	A1TS	POPTR_0007s11290	POPTR_0007s11290 (11)	scaffold_7:11642286-11644270(-) (11)	POPTR_0005s17990 (7)	NA	NA	AT3G50590.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os09g24260.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g097120.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4009.1.S1_at	A	A1TS	POPTR_0008s12280	POPTR_0008s12280 (10)	scaffold_8:7936199-7936627(+) (10)	NA	Q54FU9	Mitochondrial substrate carrier family protein W	AT1G25380.1	NAD+ transporter 2 	LOC_Os01g32980.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g068050.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4009.2.S1_at	A	A1TS	POPTR_0001s45420	POPTR_0001s45420 (11)	scaffold_1:45905785-45906693(-) (11)	NA	Q9MAP8	"Probable beta-1,3-galactosyltransferase 6"	AT1G32930.1	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.40091.1.S1_at	A	A1TS	POPTR_0004s21160	POPTR_0004s21160 (11)	scaffold_4:20405813-20406679(+) (11)	NA	Q3HVN1	N-carbamoylputrescine amidase	AT2G27450.1	nitrilase-like protein 1 	LOC_Os02g33080.1	"N-carbamoylputrescine amidase, putative, expressed"	Medtr2g107680.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.40097.1.S1_at	A	A1TS	POPTR_0003s12170	POPTR_0003s12170 (11)	scaffold_3:12835732-12836938(-) (11)	NA	O42916	Lysophospholipid acyltransferase	AT1G12640.1	MBOAT (membrane bound O-acyl transferase) family protein 	LOC_Os02g45344.1	"O-acyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40097.2.A1_at	A	A1TS	POPTR_0001s08780	POPTR_0001s08780 (11)	scaffold_1:6701993-6703164(-) (11)	NA	Q08548	Lysophospholipid acyltransferase	AT1G12640.1	MBOAT (membrane bound O-acyl transferase) family protein 	LOC_Os02g45344.1	"O-acyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4010.2.A1_a_at	A	A1TS	POPTR_0009s16050	POPTR_0009s16050 (11)	scaffold_9:12285151-12286017(+) (11)	NA	NA	NA	AT2G27080.2	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g59680.1	"NHL25, putative, expressed"	Medtr5g094840.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.40103.1.A1_s_at	A	A1TS	POPTR_0003s19970	POPTR_0003s19970 (11)	scaffold_3:18611249-18611734(+) (11)	NA	P51074	Annexin-like protein RJ4	AT5G12380.1	annexin 8 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr3g020370.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.40105.1.A1_at	A	A1TS	POPTR_0007s05090	POPTR_0007s05090 (10)	scaffold_7:3287487-3287674(+) (10)	NA	Q9M3V8	40S ribosomal protein S6	AT5G10360.1	Ribosomal protein S6e 	LOC_Os03g27260.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.40109.1.A1_at	A	A1TS	POPTR_0015s09560	POPTR_0015s09560 (9)	scaffold_15:10749838-10750492(+) (9)	NA	Q5RC94	Next to BRCA1 gene 1 protein	AT4G24690.1	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein 	LOC_Os02g38050.3	"joka2, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.40122.1.S1_at	A	A1TS	POPTR_0014s16720	POPTR_0014s16720 (11)	scaffold_14:12790208-12790884(+) (11)	NA	Q43088	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT3G07670.1	Rubisco methyltransferase family protein 	LOC_Os02g49326.1	"SET domain-containing protein, putative, expressed"	Medtr3g106630.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40134.1.A1_at	A	A1TS	POPTR_0014s17060	POPTR_0014s17060 (11)	scaffold_14:13243750-13245986(+) (11)	NA	B9SEZ6	"Elongation factor Ts, mitochondrial"	AT4G11120.1	"translation elongation factor Ts (EF-Ts), putative "	LOC_Os08g30884.1	"elongation factor Ts, putative, expressed"	Medtr6g098870.1	"Ubiquitin-associated; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005622|intracellular
PtpAffx.40145.1.S1_at	A	A1TS	POPTR_0001s15210	POPTR_0001s15210 (10)	scaffold_1:12054535-12054824(-) (10)	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	LOC_Os10g40140.1	"MSP domain containing protein, expressed"	Medtr5g013430.1	Major sperm protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40147.1.S1_at	A	A1TS	POPTR_0007s11980	POPTR_0007s11980 (10)	scaffold_7:12316268-12316763(-) (10)	NA	NA	NA	AT4G37090.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g09380.1	expressed protein	Medtr5g018580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40163.1.A1_at	A	A1TS	POPTR_0008s03060	POPTR_0008s03060 (11)	scaffold_8:1603574-1604138(-) (11)	NA	P93354	Histone H2B	AT3G45980.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.40165.1.A1_at	A	A1TS	POPTR_0015s04380	POPTR_0015s04380 (9)	scaffold_15:4495880-4496357(-) (9)	NA	Q9C9U4	Mitogen-activated protein kinase 15	AT1G73670.1	MAP kinase 15 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.40192.1.A1_a_at	A	A1TS	POPTR_0010s15410	POPTR_0010s15410 (11)	scaffold_10:14668076-14668189(-) (11)	NA	NA	NA	AT3G17020.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os05g06500.1	"universal stress protein domain containing protein, putative, expressed"	Medtr2g038300.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.40192.1.A1_s_at	A	A1TS	POPTR_0010s15410	POPTR_0010s15410 (11)	scaffold_10:14667997-14669627(-) (11)	NA	NA	NA	AT3G17020.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os05g06500.1	"universal stress protein domain containing protein, putative, expressed"	Medtr2g038300.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.40192.2.A1_at	A	A1TS	POPTR_0010s15410	POPTR_0010s15410 (11)	scaffold_10:14667797-14667935(-) (11)	NA	NA	NA	AT3G17020.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os05g06500.1	"universal stress protein domain containing protein, putative, expressed"	Medtr2g038300.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.4020.1.S1_at	A	A1MS	POPTR_0007s09290	POPTR_0007s09290 (11)	scaffold_7:8651112-8651386(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G35780.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.4020.2.S1_s_at	A	A1TS	POPTR_0004s24460	POPTR_0004s24460 (11)	scaffold_4:23132308-23133080(+) (11)	NA	Q3SZI7	Conserved oligomeric Golgi complex subunit 6	AT1G31780.1	CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os03g12460.1	"conserved oligomeric complex COG6 family protein, expressed"	Medtr5g025460.1	Conserved oligomeric complex COG6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40216.1.S1_at	A	A1TS	POPTR_0012s13770	POPTR_0012s13770 (9)	scaffold_12:13776127-13776508(-) (9)	NA	NA	NA	AT4G25433.1	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g02685.1	"lysM domain containing protein, putative, expressed"	Medtr1g129580.1	Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.4022.1.S1_at	A	A1TS	POPTR_0006s25730	POPTR_0006s25730 (11)	scaffold_6:24130951-24133043(+) (11)	NA	O34973	Putative hydrolase ytaP	AT5G25770.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g06770.1	"OsPOP11 - Putative Prolyl Oligopeptidase homologue, expressed"	AC225507_21.1	hypothetical protein AC225507.11 98776-93536 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40262.1.S1_s_at	A	A1TS	POPTR_0002s23560	POPTR_0002s23560 (11)	scaffold_2:21114690-21115488(+) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os01g68540.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr4g147330.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
PtpAffx.40272.1.S1_at	A	A1TS	POPTR_0001s29260	POPTR_0001s29260 (11)	scaffold_1:28007554-28009838(+) (11)	NA	B2V855	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT5G64440.1	fatty acid amide hydrolase 	LOC_Os04g01250.2	"amidase family protein, putative, expressed"	Medtr2g010220.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.40295.1.S1_s_at	A	A1TS	POPTR_0017s08510	POPTR_0017s08510 (11)	scaffold_17:7090403-7091234(+) (11)	NA	NA	NA	AT3G23900.3	RNA recognition motif (RRM)-containing protein 	LOC_Os01g01150.3	"RNA recognition motif, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.4031.1.S1_at	A	A1TS	POPTR_0018s06860	POPTR_0018s06860 (11)	scaffold_18:6949540-6950539(+) (11)	NA	Q07379	Putative uncharacterized protein YDL057W	AT3G47590.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g39790.1	"esterase/lipase/thioesterase, putative, expressed"	Medtr2g046090.1	"Esterase/lipase/thioesterase, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40327.1.S1_at	A	A1TS	POPTR_0006s06440	POPTR_0006s06440 (11)	scaffold_6:4598969-4599466(-) (11)	NA	Q08CL8	CCR4-NOT transcription complex subunit 10	AT5G35430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g03600.1	"immunoglobulin/major histocompatibility complex, putative, expressed"	Medtr8g121410.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40327.2.S1_at	A	A1TA	POPTR_0018s12640	POPTR_0018s12640 (11)	scaffold_18:13166673-13167123(+) (11)	POPTR_0006s06440 (6)	Q6NU53	CCR4-NOT transcription complex subunit 10-B	AT5G35430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g03600.1	"immunoglobulin/major histocompatibility complex, putative, expressed"	Medtr8g121410.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40351.1.S1_a_at	A	A1TS	POPTR_0013s13770	POPTR_0013s13770 (10)	scaffold_13:14165511-14167544(+) (10)	NA	NA	NA	AT2G20740.1	Tetraspanin family protein 	LOC_Os04g58330.1	expressed protein	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.40357.2.S1_a_at	A	A1TS	POPTR_0009s14090	POPTR_0009s14090 (10)	scaffold_9:11107104-11107323(+) (10)	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16990.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40367.1.S1_at	A	A1TS	POPTR_0005s21650	POPTR_0005s21650 (10)	scaffold_5:20755641-20756615(-) (10)	NA	Q99JH1	Alba-like protein C9orf23 homolog	AT1G76010.1	Alba DNA/RNA-binding protein 	LOC_Os09g37006.2	"protein of unknown function domain containing protein, expressed"	Medtr3g144390.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.40367.2.A1_at	A	A1TS	POPTR_0002s06670	POPTR_0002s06670 (11)	scaffold_2:4488408-4488654(+) (11)	NA	Q99JH1	Alba-like protein C9orf23 homolog	AT1G76010.1	Alba DNA/RNA-binding protein 	LOC_Os09g37006.2	"protein of unknown function domain containing protein, expressed"	Medtr3g144390.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.40382.1.S1_at	A	A1TS	POPTR_0006s25850	POPTR_0006s25850 (11)	scaffold_6:24200520-24201614(-) (11)	NA	P33399	La protein homolog	AT4G32720.2	La protein 1 	LOC_Os02g39700.1	"RNA binding protein, putative, expressed"	Medtr2g024800.1	RNA-binding region RNP-1 (RNA recognition motif); Winged helix repressor DNA-binding 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.40412.1.S1_at	A	A1TS	POPTR_0002s06300	POPTR_0002s06300 (11)	scaffold_2:4205326-4205753(+) (11)	NA	NA	NA	AT1G71780.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g51800.1	expressed protein	Medtr6g033490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4042.1.S1_at	A	A1TS	POPTR_0013s01110	POPTR_0013s01110 (11)	scaffold_13:607673-608359(-) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.40421.1.A1_s_at	A	A1TS	POPTR_0005s21570	POPTR_0005s21570 (11)	scaffold_5:20690089-20690129(+) (11)	NA	P37219	Abscisic stress-ripening protein 2	NA	NA	LOC_Os01g72900.1	"abscisic stress-ripening, putative, expressed"	NA	NA	GO:0006950|response to stress	NA	NA
PtpAffx.40421.1.A1_x_at	A	A1TS	POPTR_0005s21570	POPTR_0005s21570 (10)	scaffold_5:20690093-20691341(+) (10)	NA	P37219	Abscisic stress-ripening protein 2	NA	NA	LOC_Os01g72900.1	"abscisic stress-ripening, putative, expressed"	NA	NA	GO:0006950|response to stress	NA	NA
PtpAffx.40421.2.A1_at	A	A1MS	POPTR_0005s21570	POPTR_0005s21570 (11)	scaffold_5:20690238-20690687(+) (11)	POPTR_0005s21590 (8)//POPTR_0005s21600 (6)	P37219	Abscisic stress-ripening protein 2	NA	NA	LOC_Os01g72900.1	"abscisic stress-ripening, putative, expressed"	NA	NA	GO:0006950|response to stress	NA	NA
PtpAffx.40421.3.A1_at	A	A1TS	POPTR_0005s21590	POPTR_0005s21590 (11)	scaffold_5:20703724-20704438(+) (11)	NA	Q08655	Abscisic stress-ripening protein 1	NA	NA	LOC_Os01g72900.1	"abscisic stress-ripening, putative, expressed"	NA	NA	GO:0006950|response to stress	NA	NA
PtpAffx.4043.1.S1_at	A	A1TS	POPTR_0013s00930	POPTR_0013s00930 (9)	scaffold_13:483825-485241(-) (10)	NA	A4IF69	NHL repeat-containing protein 2	AT1G56500.1	haloacid dehalogenase-like hydrolase family protein 	LOC_Os03g19760.1	"HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed"	Medtr4g023880.1	"TolB, C-terminal "	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.40433.1.S1_at	A	A1TS	POPTR_0001s44220	POPTR_0001s44220 (11)	scaffold_1:44678777-44678886(+) (11)	NA	Q8LDI5	Thioredoxin-like protein CXXS1	AT1G11530.1	C-terminal cysteine residue is changed to a serine 1 	NA	NA	Medtr4g111230.1	Thioredoxin fold; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40433.1.S1_x_at	A	A1TS	POPTR_0001s44220	POPTR_0001s44220 (11)	scaffold_1:44677283-44678886(+) (11)	NA	Q8LDI5	Thioredoxin-like protein CXXS1	AT1G11530.1	C-terminal cysteine residue is changed to a serine 1 	NA	NA	Medtr4g111230.1	Thioredoxin fold; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40433.2.S1_at	A	A1MS	POPTR_0001s44220	POPTR_0001s44220 (9)	scaffold_1:44677384-44677497(+) (9)	NA	Q8LDI5	Thioredoxin-like protein CXXS1	AT1G11530.1	C-terminal cysteine residue is changed to a serine 1 	NA	NA	Medtr4g111230.1	Thioredoxin fold; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40439.1.S1_at	A	A1TS	POPTR_0006s23520	POPTR_0006s23520 (11)	scaffold_6:22236171-22236757(-) (11)	NA	P83291	NADH-cytochrome b5 reductase-like protein	AT5G20080.1	FAD/NAD(P)-binding oxidoreductase 	LOC_Os01g07910.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr8g119780.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.40451.1.S1_at	A	A2MS	POPTR_0006s24290	POPTR_0006s24300 (11)//POPTR_0006s24290 (11)	scaffold_6:22930610-22930764(+) (11)//scaffold_6:22942720-22942874(+) (11)	NA	NA	NA	AT4G33050.3	calmodulin-binding family protein 	LOC_Os01g38980.2	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40451.1.S1_s_at	A	A2TS	POPTR_0006s24290	POPTR_0006s24300 (11)//POPTR_0006s24290 (11)	scaffold_6:22930559-22930944(+) (11)//scaffold_6:22942669-22943054(+) (11)	NA	NA	NA	AT4G33050.3	calmodulin-binding family protein 	LOC_Os01g38980.2	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40515.1.A1_at	A	A1TS	POPTR_0018s08090	POPTR_0018s08090 (11)	scaffold_18:8870679-8871204(-) (11)	NA	P69781	GATA transcription factor 12	AT5G25830.1	GATA transcription factor 12 	LOC_Os01g54210.1	"GATA zinc finger domain containing protein, expressed"	Medtr1g007960.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.40519.1.A1_a_at	A	A1TS	POPTR_0003s12740	POPTR_0003s12740 (11)	scaffold_3:13229304-13230162(+) (11)	NA	NA	NA	AT4G11560.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g34330.2	"BAH domain containing protein, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	NA	GO:0003677|DNA binding	NA
PtpAffx.40533.1.S1_s_at	A	A1TS	POPTR_0003s06960	POPTR_0003s06960 (11)	scaffold_3:8565434-8565958(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g35650.1	"late embryogenesis abundant protein, putative, expressed"	Medtr8g026440.1	Late embryogenesis abundant protein 3 	GO:0006950|response to stress	NA	NA
PtpAffx.40537.1.A1_at	A	A1TS	POPTR_0006s03420	POPTR_0006s03420 (11)	scaffold_6:2198101-2198563(-) (11)	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0008270|zinc ion binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.40540.1.S1_at	A	A1TS	POPTR_0014s10650	POPTR_0014s10650 (11)	scaffold_14:7924329-7925291(+) (11)	NA	Q8R116	Protein notum homolog	AT3G62060.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134290.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40561.1.A1_at	A	A1TS	POPTR_0015s00530	POPTR_0015s00530 (11)	scaffold_15:340825-341271(+) (11)	NA	Q9NW08	DNA-directed RNA polymerase III subunit RPC2	AT5G45140.1	nuclear RNA polymerase C2 	LOC_Os03g28960.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr1g028340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.40570.1.S1_s_at	A	A1TS	POPTR_0014s09250	POPTR_0014s09250 (11)	scaffold_14:6869258-6869703(+) (11)	NA	NA	NA	AT4G01037.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os05g49610.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr3g105870.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40579.1.S1_at	A	A1TS	POPTR_0001s06060	POPTR_0001s06060 (9)	scaffold_1:4724098-4724799(-) (9)	NA	NA	NA	AT4G30880.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g58660.1	"LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g103720.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40595.2.S1_a_at	A	A1TS	POPTR_0016s00370	POPTR_0016s00370 (11)	scaffold_16:87880-88277(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40636.1.S1_s_at	A	A2TS	POPTR_0004s01370	POPTR_0004s01370 (11)//POPTR_1056s00200 (10)	scaffold_1056:732-1061(+) (11)//scaffold_4:752340-752669(-) (11)	NA	Q7XPR1	Autophagy-related protein 8B	AT1G62040.2	Ubiquitin-like superfamily protein 	LOC_Os04g53240.4	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40641.1.S1_at	A	A1TS	POPTR_0001s33590	POPTR_0001s33590 (11)	scaffold_1:31820863-31821425(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40681.1.S1_at	A	A1TS	POPTR_0005s26570	POPTR_0005s26570 (10)	scaffold_5:24524560-24525440(-) (10)	NA	Q99JH1	Alba-like protein C9orf23 homolog	AT1G76010.1	Alba DNA/RNA-binding protein 	LOC_Os09g37006.1	"protein of unknown function domain containing protein, expressed"	Medtr3g144390.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.40682.1.S1_a_at	A	A4TS	POPTR_0012s12200	POPTR_1727s00200 (11)//POPTR_0012s15210 (11)//POPTR_0012s12200 (11)//POPTR_0012s02440 (10)	scaffold_12:2011328-2011584(+) (10)//scaffold_12:12443402-12443658(-) (10)//scaffold_12:14853182-14853438(+) (10)//scaffold_1727:585-841(-) (10)	NA	Q01QR6	50S ribosomal protein L9	AT5G53070.1	Ribosomal protein L9/RNase H1 	LOC_Os05g45270.1	"ribosomal L9, putative, expressed"	Medtr5g039560.1	Ribosomal protein L9 N-terminal-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40682.4.S1_a_at	A	A4TS	POPTR_0012s02440	POPTR_0012s15210 (11)//POPTR_0012s12200 (11)//POPTR_0012s02440 (11)//POPTR_1727s00200 (9)	scaffold_12:2011976-2012195(+) (11)//scaffold_12:12442798-12443010(-) (11)//scaffold_12:14853831-14854043(+) (11)//scaffold_1727:124-193(-) (9)	NA	Q01QR6	50S ribosomal protein L9	AT5G53070.1	Ribosomal protein L9/RNase H1 	LOC_Os05g45270.1	"ribosomal L9, putative, expressed"	Medtr5g039560.1	Ribosomal protein L9 N-terminal-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40688.1.S1_at	A	A1TS	POPTR_0013s02120	POPTR_0013s02120 (11)	scaffold_13:1266879-1267145(-) (11)	NA	Q6A333	Protein ALWAYS EARLY 2	AT3G05380.4	DIRP ;Myb-like DNA-binding domain 	LOC_Os03g43800.2	"DIRP family protein, putative, expressed"	Medtr1g099580.1	DIRP; Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4070.1.A1_s_at	A	A1TS	POPTR_0001s06560	POPTR_0001s06560 (11)	scaffold_1:5051207-5051711(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G54400.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g46480.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g043180.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40711.1.A1_a_at	A	A1TS	POPTR_0011s11990	POPTR_0011s11990 (11)	scaffold_11:14768620-14768752(-) (11)	NA	NA	NA	AT1G53040.2	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g100710.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40711.2.A1_at	A	A1MS	POPTR_0011s11990	POPTR_0011s11990 (11)	scaffold_11:14768765-14769275(-) (11)	NA	NA	NA	AT1G53040.2	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g100710.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40736.1.S1_at	A	A1MS	POPTR_0006s04450	POPTR_0006s04450 (10)	scaffold_6:3038594-3038922(+) (10)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT5G03960.1	IQ-domain 12 	LOC_Os03g23960.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr4g118520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40743.1.A1_at	A	A1TS	POPTR_0017s07670	POPTR_0017s07670 (10)	scaffold_17:5959673-5960608(+) (10)	NA	NA	NA	AT2G14095.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 106 Blast hits to 103 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 4; Plants - 87; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os08g37720.1	expressed protein	Medtr4g120950.1	"plastid-targeted protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40799.1.A1_a_at	A	A1TS	POPTR_0008s17030	POPTR_0008s17030 (11)	scaffold_8:11462055-11462204(-) (11)	NA	P48809	Heterogeneous nuclear ribonucleoprotein 27C	AT2G33410.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os10g33230.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.40802.2.S1_at	A	A1TS	POPTR_0006s27380	POPTR_0006s27380 (11)	scaffold_6:25291904-25292328(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40802.3.S1_a_at	A	A1TS	POPTR_0006s27380	POPTR_0006s27380 (11)	scaffold_6:25292453-25292619(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40803.1.S1_at	A	A1TS	POPTR_0014s10620	POPTR_0014s10620 (9)	scaffold_14:7908714-7911726(-) (9)	NA	NA	NA	AT4G01650.1	Polyketide cyclase / dehydrase and lipid transport protein 	LOC_Os01g74010.2	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4082.1.S1_at	A	A1TS	POPTR_0008s19940	POPTR_0008s19940 (11)	scaffold_8:13774212-13774458(-) (11)	NA	P42056	Mitochondrial outer membrane protein porin of 36 kDa	AT3G01280.1	voltage dependent anion channel 1 	LOC_Os09g19734.3	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr7g008680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.4082.1.S1_s_at	A	A1TS	POPTR_0008s19940	POPTR_0008s19940 (11)	scaffold_8:13774259-13774696(-) (11)	NA	P42056	Mitochondrial outer membrane protein porin of 36 kDa	AT3G01280.1	voltage dependent anion channel 1 	LOC_Os09g19734.3	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr7g008680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.4082.3.S1_a_at	A	A1TS	POPTR_0010s04240	POPTR_0010s04240 (10)	scaffold_10:5164254-5165101(+) (10)	NA	P42056	Mitochondrial outer membrane protein porin of 36 kDa	AT3G01280.1	voltage dependent anion channel 1 	LOC_Os09g19734.3	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr7g008680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.4083.1.S1_at	A	A1TS	POPTR_0010s01790	POPTR_0010s01790 (9)	scaffold_10:1962589-1963036(+) (9)	NA	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4083.2.S1_a_at	A	A3TS	POPTR_0008s22170	POPTR_0008s22170 (11)//POPTR_0010s01790 (11)//POPTR_0008s22210 (10)	scaffold_10:1962071-1962309(+) (11)//scaffold_8:16542297-16542549(-) (11)//scaffold_8:16620734-16620982(-) (10)	NA	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4083.2.S1_at	A	A1TS	POPTR_0008s22170	POPTR_0008s22170 (11)	scaffold_8:16542257-16542912(-) (11)//scaffold_8:16620694-16621344(-) (11)	NA	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40844.1.S1_at	A	A1TS	POPTR_0014s09800	POPTR_0014s09800 (11)	scaffold_133:4741-5387(-) (10)//scaffold_14:7303008-7304377(+) (11)	NA	NA	NA	AT3G61870.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). "	LOC_Os02g03010.1	expressed protein	Medtr7g145810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4085.1.S1_a_at	A	A1TS	POPTR_0007s02390	POPTR_0007s02390 (11)	scaffold_7:1406063-1406191(+) (11)	NA	Q41328	Pto-interacting protein 1	AT3G59350.2	Protein kinase superfamily protein 	LOC_Os01g67340.3	"STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed"	Medtr1g146840.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.4085.3.S1_s_at	A	A1TS	POPTR_0007s05490	POPTR_0007s05490 (11)	scaffold_7:3577711-3577947(+) (11)	NA	Q9XEE2	Annexin D2	AT5G65020.1	annexin 2 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.4085.4.S1_at	A	A1TS	POPTR_0017s06410	POPTR_0017s06410 (11)	scaffold_17:4917239-4917779(+) (11)	NA	Q41328	Pto-interacting protein 1	AT3G59350.2	Protein kinase superfamily protein 	LOC_Os01g67340.3	"STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed"	Medtr1g146840.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.4085.5.A1_at	A	A1TA	POPTR_0005s07740	POPTR_0005s07740 (10)	scaffold_5:5302251-5302367(-) (10)	NA	Q9XEE2	Annexin D2	AT5G65020.1	annexin 2 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.4086.1.S1_at	A	A1TS	POPTR_0010s25710	POPTR_0010s25710 (11)	scaffold_10:21253150-21253651(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G51630.1	O-fucosyltransferase family protein 	LOC_Os09g32320.1	"growth regulator related protein, putative, expressed"	Medtr2g043060.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40878.1.S1_a_at	A	A2TS	POPTR_0006s20200	POPTR_0006s20200 (11)//POPTR_0018s11940 (11)	scaffold_18:12579054-12580982(+) (11)//scaffold_6:19253540-19255606(+) (11)	NA	NA	NA	AT2G24290.1	Protein of unknown function (DUF1068) 	LOC_Os04g42340.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40878.2.S1_at	A	A1TS	POPTR_0006s20200	POPTR_0006s20200 (11)	scaffold_6:19255558-19256014(+) (11)	NA	NA	NA	AT2G24290.1	Protein of unknown function (DUF1068) 	LOC_Os04g42340.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40885.1.S1_at	A	A1MS	POPTR_0010s08790	POPTR_0010s08790 (11)	scaffold_10:9626651-9626875(+) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.40894.2.A1_s_at	A	A1TS	POPTR_0004s20940	POPTR_0004s20940 (11)	scaffold_4:20292533-20293009(+) (11)	NA	Q6DIQ3	Protein phosphatase 1 regulatory subunit 7	AT5G22320.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g73560.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr2g107470.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.409.1.S1_at	A	A1TS	POPTR_0013s10580	POPTR_0013s10580 (9)	scaffold_13:10924557-10932799(-) (10)//scaffold_13:10932786-10933248(-) (9)	POPTR_0013s10590 (6)	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT1G33590.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr3g010430.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.4090.1.A1_s_at	A	A1TS	POPTR_0009s05120	POPTR_0009s05120 (11)	scaffold_9:5266010-5266093(-) (11)	NA	Q8LDP4	Peptidyl-prolyl cis-trans isomerase CYP19-4	AT2G29960.1	cyclophilin 5 	LOC_Os06g49480.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr3g093650.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.4090.2.S1_at	A	A1TS	POPTR_0001s25880	POPTR_0001s25880 (11)	scaffold_1:24948849-24949350(-) (11)	NA	Q8LDP4	Peptidyl-prolyl cis-trans isomerase CYP19-4	AT2G29960.1	cyclophilin 5 	LOC_Os06g49480.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr3g093650.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.40924.1.S1_at	A	A1TS	POPTR_0001s38730	POPTR_0001s38730 (11)	scaffold_1:37901336-37902605(-) (11)	NA	Q759M1	Protein SIP5	AT1G78420.2	RING/U-box superfamily protein 	LOC_Os02g14720.1	expressed protein	Medtr7g031940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40925.1.S1_at	A	A1TS	POPTR_0006s09690	POPTR_0006s09690 (10)	scaffold_6:7109925-7110246(-) (10)	NA	Q9M391	Ataxin-3 homolog	AT3G54130.1	Josephin family protein 	LOC_Os01g63250.1	"josephin, putative, expressed"	Medtr4g012130.1	Machado-Joseph disease protein MJD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40949.2.A1_at	A	A1TS	POPTR_0524s00220	POPTR_0524s00220 (10)	scaffold_524:14027-14309(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40987.1.A1_at	A	A1TS	POPTR_0004s14210	POPTR_0004s14210 (11)	scaffold_4:14688280-14690630(+) (11)	POPTR_0019s00290 (6)	Q6DEL2	Cleft lip and palate transmembrane protein 1 homolog	AT5G08500.1	Transmembrane CLPTM1 family protein 	LOC_Os04g36050.1	"cleft lip and palate transmembrane protein 1, putative, expressed"	Medtr3g151740.1	Cleft lip and palate transmembrane 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4099.1.S1_a_at	A	A1TS	POPTR_0007s12750	POPTR_0007s12750 (11)	scaffold_7:13003287-13003582(+) (11)	NA	O82663	"Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial"	AT5G66760.1	succinate dehydrogenase 1-1 	LOC_Os07g04240.1	"succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed"	Medtr5g019940.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.4101.1.A1_s_at	A	A1TS	POPTR_0018s12170	POPTR_0018s12170 (11)	scaffold_18:12739106-12739458(+) (11)	NA	NA	NA	AT5G35110.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr8g122740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41022.1.S1_at	A	A1TS	POPTR_0018s09920	POPTR_0018s09920 (11)	scaffold_18:10988422-10993036(-) (11)	NA	Q92373	Replication factor A protein 2	AT3G02920.1	"Replication protein A, subunit RPA32 "	LOC_Os02g42230.1	"RPA2B - Putative single-stranded DNA binding complex subunit 2, expressed"	Medtr8g129120.1	"nucleic acid binding, OB-fold, tRNA/helicase-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.4105.1.S1_at	A	A1TS	POPTR_0014s15820	POPTR_0014s15820 (9)	scaffold_14:11905861-11906664(+) (9)	NA	Q67UF5	Protein disulfide isomerase-like 2-3	AT1G04980.1	PDI-like 2-2 	LOC_Os09g27830.1	"OsPDIL2-3  protein disulfide isomerase PDIL2-3, expressed"	Medtr5g092290.1	Disulphide isomerase; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.41056.1.S1_at	A	A1TS	POPTR_0010s16870	POPTR_0010s16870 (10)	scaffold_10:15687286-15688621(+) (10)	NA	Q54HW1	26S proteasome non-ATPase regulatory subunit 10	AT2G03430.1	Ankyrin repeat family protein 	LOC_Os03g55110.1	"26S proteasome non-ATPase regulatory subunit 10, putative, expressed"	Medtr5g046490.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4106.1.A1_at	A	A1TS	POPTR_0012s10110	POPTR_0012s10110 (11)	scaffold_12:10948492-10948687(-) (11)	NA	P95245	Phospholipase C 3	AT3G48610.1	non-specific phospholipase C6 	LOC_Os01g72520.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.4106.1.A1_s_at	A	A1TS	POPTR_0012s10110	POPTR_0012s10110 (11)	scaffold_12:10948678-10949114(-) (11)	POPTR_0015s10980 (7)	P95245	Phospholipase C 3	AT3G48610.1	non-specific phospholipase C6 	LOC_Os01g72520.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.4106.2.S1_at	A	A1TS	POPTR_0012s10110	POPTR_0012s10110 (11)	scaffold_12:10950459-10950534(-) (11)	NA	P95245	Phospholipase C 3	AT3G48610.1	non-specific phospholipase C6 	LOC_Os01g72520.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.4106.2.S1_s_at	A	A1TS	POPTR_0012s10110	POPTR_0012s10110 (11)	scaffold_12:10950099-10950472(-) (11)	POPTR_0015s10980 (7)	P95245	Phospholipase C 3	AT3G48610.1	non-specific phospholipase C6 	LOC_Os01g72520.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.41063.1.S1_s_at	A	A1TS	POPTR_0017s08550	POPTR_0017s08550 (11)	scaffold_17:7131907-7132250(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g63040.1	expressed protein	Medtr3g105200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41076.1.S1_at	A	A1TS	POPTR_0008s15860	POPTR_0008s15860 (10)	scaffold_8:10569503-10570432(-) (10)	NA	Q9XGW1	Protein PINHEAD	AT5G43810.2	Stabilizer of iron transporter SufD / Polynucleotidyl transferase 	LOC_Os06g39640.1	"PINHEAD, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41081.1.A1_a_at	A	A1TS	POPTR_0010s16900	POPTR_0010s16900 (11)	scaffold_10:15701924-15702375(+) (11)	NA	NA	NA	AT2G03390.1	uvrB/uvrC motif-containing protein 	LOC_Os08g07540.1	"hemimethylated DNA binding domain containing protein, expressed"	Medtr5g046350.1	UvrB/UvrC protein; Hemimethylated DNA-binding region 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.41081.1.A1_at	A	A1TS	POPTR_0010s16900	POPTR_0010s16900 (11)	scaffold_10:15702215-15702651(+) (11)	NA	NA	NA	AT2G03390.1	uvrB/uvrC motif-containing protein 	LOC_Os08g07540.1	"hemimethylated DNA binding domain containing protein, expressed"	Medtr5g046350.1	UvrB/UvrC protein; Hemimethylated DNA-binding region 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.41094.1.A1_s_at	A	A1TS	POPTR_0003s14230	POPTR_0003s14230 (11)	scaffold_3:14356087-14356843(+) (11)	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.1	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr3g079520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.4110.1.S1_a_at	A	A1TS	POPTR_0001s15280	POPTR_0001s15280 (11)	scaffold_1:12112633-12113272(+) (11)	NA	Q05737	GTP-binding protein YPTM2	AT1G02130.1	RAS 5 	LOC_Os02g43690.1	"ras-related protein, putative, expressed"	Medtr7g093170.1	"Ras GTPase; Sigma-54 factor, interaction region "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.41109.1.S1_at	A	A1TS	POPTR_0018s11010	POPTR_0018s11010 (10)	scaffold_18:11822343-11822952(+) (10)	NA	Q6NYP0	Transmembrane protein 208	AT2G23940.1	Protein of unknown function (DUF788) 	LOC_Os02g44690.1	"HSPC171 protein, putative, expressed"	Medtr8g144610.1	Protein of unknown function DUF788 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4111.1.S1_at	A	A1TS	POPTR_0004s23120	POPTR_0004s23120 (11)	scaffold_4:21897778-21898030(-) (11)	NA	A8ID74	Ribosome biogenesis protein BOP1 homolog	AT2G40360.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g25440.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g005810.1	"Calcium-binding EF-hand; WD40-like; BOP1, N-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0005634|nucleus
PtpAffx.41125.1.S1_at	A	A1TS	POPTR_0011s08350	POPTR_0011s08350 (11)	scaffold_11:9647798-9648516(+) (11)	NA	Q9CXW3	Calcyclin-binding protein	AT1G30070.1	SGS domain-containing protein 	LOC_Os01g55270.1	"SGS domain containing protein, expressed"	Medtr4g114320.1	CS; SGS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41142.1.S1_at	A	A1TS	POPTR_0008s07490	POPTR_0008s07490 (11)	scaffold_8:4584738-4586874(-) (11)	NA	NA	NA	AT5G05360.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g27660.1	expressed protein	Medtr7g077160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41142.2.S1_a_at	A	A2TS	POPTR_0008s07490	POPTR_0008s07490 (11)//POPTR_0010s18960 (11)	scaffold_10:17035173-17035323(+) (11)//scaffold_8:4588079-4588229(-) (11)	NA	NA	NA	AT5G05360.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g27660.1	expressed protein	Medtr7g077160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41142.2.S1_at	A	A1TS	POPTR_0010s18960	POPTR_0010s18960 (11)	scaffold_10:17035194-17038276(+) (11)	NA	NA	NA	AT5G05360.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g27660.1	expressed protein	Medtr7g077160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41152.1.S1_s_at	A	A1TS	POPTR_0003s18620	POPTR_0003s18620 (11)	scaffold_3:17628616-17630065(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr4g023350.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.41155.1.S1_at	A	A1TS	POPTR_0014s00320	POPTR_0014s00320 (11)	scaffold_14:134338-134775(+) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13060.2	evolutionarily conserved C-terminal region 5 	LOC_Os08g44200.1	"ECT5, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41158.1.S1_s_at	A	A1TS	POPTR_0009s07050	POPTR_0009s07050 (11)	scaffold_9:6689758-6689967(+) (11)	NA	Q39023	Mitogen-activated protein kinase 3	AT3G45640.1	mitogen-activated protein kinase 3 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g080100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.41158.2.S1_at	A	A1MS	POPTR_0001s27860	POPTR_0001s27860 (10)	scaffold_1:26725438-26725762(+) (10)	NA	Q39023	Mitogen-activated protein kinase 3	AT3G45640.1	mitogen-activated protein kinase 3 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g080100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.41158.3.A1_at	A	A1TS	POPTR_0001s27860	POPTR_0001s27860 (10)	scaffold_1:26730863-26731590(+) (10)	NA	Q39023	Mitogen-activated protein kinase 3	AT3G45640.1	mitogen-activated protein kinase 3 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g080100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.4116.1.A1_s_at	A	A1TS	POPTR_0017s04630	POPTR_0017s04630 (11)	scaffold_17:3543460-3543672(-) (11)//scaffold_7:628222-628281(-) (10)	NA	NA	NA	AT2G20585.3	nuclear fusion defective 6 	NA	NA	Medtr4g108540.1	"NFD6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4116.2.A1_at	A	A1TS	POPTR_0017s04630	POPTR_0017s04630 (11)	scaffold_17:3542615-3543411(-) (11)	NA	NA	NA	AT2G20585.3	nuclear fusion defective 6 	NA	NA	Medtr4g108540.1	"NFD6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41165.2.S1_a_at	A	A1TS	POPTR_0005s05320	POPTR_0005s05320 (11)	scaffold_5:3516206-3516689(-) (11)	NA	Q2QMH1	Serine/threonine-protein kinase Nek2	AT1G54510.3	NIMA-related serine/threonine kinase 1 	LOC_Os12g41180.1	"LSTK-1-like kinase, putative, expressed"	Medtr1g083910.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.41170.1.A1_at	A	A1TS	POPTR_0002s02490	POPTR_0002s02490 (11)	scaffold_2:1409895-1410146(+) (11)	NA	Q54UB1	tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6	AT2G45730.1	eukaryotic initiation factor 3 gamma subunit family protein 	LOC_Os04g02150.2	"tRNA methyltransferase, putative, expressed"	Medtr1g030970.1	"Eukaryotic initiation factor 3, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.41173.1.S1_at	A	A1TS	POPTR_0016s04430	POPTR_0016s04430 (11)	scaffold_16:2603746-2604318(-) (11)	NA	Q6ICY4	Metal tolerance protein C2	AT3G12100.1	Cation efflux family protein 	LOC_Os02g58580.5	"cation efflux family protein, putative, expressed"	Medtr7g111990.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.41177.1.S1_s_at	A	A1TS	POPTR_0014s09780	POPTR_0014s09780 (11)	scaffold_14:7292692-7293011(-) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G46620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g02330.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g123370.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.4118.1.S1_at	A	A1TS	POPTR_0012s07650	POPTR_0012s07650 (11)	scaffold_12:8564862-8565308(+) (11)	NA	Q94A40	Coatomer subunit alpha-1	AT1G62020.1	"Coatomer, alpha subunit "	LOC_Os09g04110.2	"coatomer alpha subunit, putative, expressed"	Medtr4g096580.1	"Coatomer WD associated region; Coatomer alpha subunit, C-terminal; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
PtpAffx.4118.2.A1_at	A	A1TS	POPTR_0015s08110	POPTR_0015s08110 (11)	scaffold_15:9384507-9384541(+) (11)	NA	Q94A40	Coatomer subunit alpha-1	AT1G62020.1	"Coatomer, alpha subunit "	LOC_Os09g04110.2	"coatomer alpha subunit, putative, expressed"	Medtr4g096580.1	"Coatomer WD associated region; Coatomer alpha subunit, C-terminal; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
PtpAffx.4118.2.A1_s_at	A	A1TS	POPTR_0015s08110	POPTR_0015s08110 (11)	scaffold_15:9384008-9384316(+) (11)	NA	Q94A40	Coatomer subunit alpha-1	AT1G62020.1	"Coatomer, alpha subunit "	LOC_Os09g04110.2	"coatomer alpha subunit, putative, expressed"	Medtr4g096580.1	"Coatomer WD associated region; Coatomer alpha subunit, C-terminal; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
PtpAffx.41183.1.A1_at	A	A1TS	POPTR_0018s09350	POPTR_0018s09350 (11)	scaffold_18:10224384-10224935(+) (11)	POPTR_0656s00200 (6)	Q54WR8	Glucosamine 6-phosphate N-acetyltransferase 1	AT5G15770.1	glucose-6-phosphate acetyltransferase 1 	LOC_Os09g31310.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g127390.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.41194.1.S1_s_at	A	A1TS	POPTR_0018s02200	POPTR_0018s02200 (11)	scaffold_18:1948559-1949680(-) (11)	NA	Q640K1	Neurochondrin	AT4G32050.1	neurochondrin family protein 	LOC_Os02g55530.1	"neurochondrin family protein, putative, expressed"	Medtr3g137890.1	Neurochondrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41199.1.S1_at	A	A1TS	POPTR_0005s05500	POPTR_0005s05500 (11)	scaffold_5:3640733-3641099(+) (11)	NA	O22768	Transcription factor UNE12	AT4G02590.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g58330.1	"BHLH transcription factor, putative, expressed"	Medtr1g083450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.41241.1.A1_at	A	A1TS	POPTR_0008s03010	POPTR_0008s03010 (9)	scaffold_8:1578285-1578853(-) (11)	NA	P29503	Protein neuralized	AT5G04460.3	RING/U-box superfamily protein 	LOC_Os02g57750.1	"protein binding protein, putative, expressed"	AC235664_19.1	"Haem peroxidase, plant/fungal/bacterial AC235664.1 73370-70390 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41242.1.S1_at	A	A1TS	POPTR_0008s02910	POPTR_0008s02910 (11)	scaffold_8:1497314-1497685(-) (11)	NA	Q9P4X3	Probable U3 small nucleolar RNA-associated protein 7	AT3G10530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g08770.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41255.1.A1_a_at	A	A3TS	POPTR_0015s00330	POPTR_0015s00340 (11)//POPTR_0015s00330 (11)//POPTR_0015s00370 (10)	scaffold_15:168705-169365(+) (11)//scaffold_15:181097-181611(+) (11)//scaffold_15:212016-212672(-) (10)	NA	Q6AWV1	Probable ribonuclease P/MRP protein subunit POP5	AT1G04635.1	ribonuclease P family protein / Rpp14 family protein 	LOC_Os04g22870.1	"rpp14 family protein, expressed"	Medtr5g077340.1	Ribonuclease P-related protein 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004540|ribonuclease activity	NA
PtpAffx.41255.2.S1_at	A	A1TS	POPTR_0008s12570	POPTR_0008s12570 (11)	scaffold_8:8140114-8140651(-) (11)	NA	NA	NA	AT2G01100.3	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr1g137830.1	"W09G12.7, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41268.1.S1_at	A	A1TS	POPTR_0014s05910	POPTR_0014s05910 (10)	scaffold_14:4419391-4419885(-) (10)	POPTR_0014s05940 (6)	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44370.1	"scarecrow, putative, expressed"	Medtr4g029350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4127.1.A1_s_at	A	A1TS	POPTR_0004s11040	POPTR_0004s11040 (11)	scaffold_4:9664392-9664897(+) (11)	NA	Q9BWU0	Kanadaptin	AT5G38840.1	SMAD/FHA domain-containing protein  	LOC_Os06g16430.1	"FHA domain containing protein, putative, expressed"	Medtr7g015550.1	"forkhead-associated domain-containing protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41318.1.S1_a_at	A	A1TS	POPTR_0007s14620	POPTR_0007s14620 (11)	scaffold_7:14372760-14372835(+) (11)	NA	Q9FYA6	"Branched-chain-amino-acid aminotransferase 5, chloroplastic"	AT5G65780.1	branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) 	LOC_Os03g01600.1	"aminotransferase domain containing protein, putative, expressed"	Medtr5g015110.1	Branched-chain amino acid aminotransferase II 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.41318.1.S1_at	A	A1TS	POPTR_0007s14620	POPTR_0007s14620 (11)	scaffold_7:14371425-14375127(+) (11)	NA	Q9FYA6	"Branched-chain-amino-acid aminotransferase 5, chloroplastic"	AT5G65780.1	branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) 	LOC_Os03g01600.1	"aminotransferase domain containing protein, putative, expressed"	Medtr5g015110.1	Branched-chain amino acid aminotransferase II 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.41318.2.S1_at	A	A1TS	POPTR_0007s14620	POPTR_0007s14620 (11)	scaffold_7:14373864-14374061(+) (11)	NA	Q9FYA6	"Branched-chain-amino-acid aminotransferase 5, chloroplastic"	AT5G65780.1	branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) 	LOC_Os03g01600.1	"aminotransferase domain containing protein, putative, expressed"	Medtr5g015110.1	Branched-chain amino acid aminotransferase II 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.41319.1.S1_a_at	A	A1TS	POPTR_0008s11150	POPTR_0008s11150 (11)	scaffold_8:7057273-7057447(-) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G13635.2	DNA glycosylase superfamily protein 	LOC_Os08g38170.1	"methyladenine glycosylase, putative, expressed"	Medtr8g077310.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.41325.1.A1_at	A	A1MS	POPTR_0014s03140	POPTR_0014s03140 (10)	scaffold_14:2532474-2538194(-) (11)//scaffold_14:2538139-2538735(-) (9)	NA	NA	NA	AT5G44250.1	"Protein of unknown function DUF829, transmembrane 53 "	LOC_Os11g40070.1	expressed protein	Medtr3g148000.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4133.1.A1_a_at	A	A1TS	POPTR_0001s06030	POPTR_0001s06030 (11)	scaffold_1:4712921-4716743(-) (11)	NA	NA	NA	AT3G04040.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18250.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g15979.1	"gb protein, putative, expressed"	Medtr4g069990.1	"gb protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41339.1.S1_at	A	A1TS	POPTR_0015s04780	POPTR_0015s04780 (11)	scaffold_15:4981137-4982526(+) (11)	NA	P49964	Signal recognition particle 19 kDa protein	AT1G48160.1	"signal recognition particle 19 kDa protein, putative / SRP19, putative "	LOC_Os06g23430.2	"signal recognition particle 19 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
PtpAffx.41350.1.A1_s_at	A	A1TS	POPTR_0001s04270	POPTR_0001s04270 (9)	scaffold_1:3375153-3375512(-) (11)	NA	NA	NA	AT4G08810.1	calcium ion binding 	LOC_Os07g43990.1	expressed protein	Medtr4g134130.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4136.1.S1_at	A	A1TS	POPTR_0011s15990	POPTR_0011s15990 (11)	scaffold_11:17974889-17975968(+) (11)	NA	NA	NA	AT4G21105.1	cytochrome-c oxidases;electron carriers 	LOC_Os07g45320.1	"COX VIIa, putative, expressed"	Medtr8g106530.1	"Cytochrome c oxidase, subunit VIIa "	NA	GO:0004129|cytochrome-c oxidase activity||GO:0009055|electron carrier activity	GO:0005746|mitochondrial respiratory chain
PtpAffx.41361.1.A1_at	A	A1TS	POPTR_0010s17750	POPTR_0010s17750 (11)	scaffold_10:16240962-16241356(+) (11)	NA	O14776	Transcription elongation regulator 1	AT3G19840.1	pre-mRNA-processing protein 40C 	LOC_Os10g34380.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g101290.1	FF 	NA	GO:0005515|protein binding	NA
PtpAffx.41372.2.A1_at	A	A1TS	POPTR_1038s00210	POPTR_1038s00210 (11)	scaffold_1038:7554-7775(+) (11)//scaffold_16:823974-824195(+) (11)//scaffold_16:842821-843013(+) (10)	POPTR_0016s01800 (6)	Q40288	Anthocyanidin 3-O-glucosyltransferase 6 (Fragment)	AT3G21780.1	UDP-glucosyl transferase 71B6 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g097740.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4139.1.S1_at	A	A1TS	POPTR_0004s06590	POPTR_0004s06590 (11)	scaffold_4:5290696-5292323(+) (11)	NA	Q8R344	Coiled-coil domain-containing protein 12	AT3G05070.1	"CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). "	LOC_Os06g51420.1	"coiled-coil domain-containing protein 12, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41412.1.A1_at	A	A1TS	POPTR_0014s16700	POPTR_0014s16700 (11)	scaffold_14:12779764-12781222(-) (11)	NA	P49572	"Indole-3-glycerol phosphate synthase, chloroplastic"	AT5G48220.1	Aldolase-type TIM barrel family protein 	LOC_Os04g39270.1	"indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed"	Medtr5g091460.1	"Indole-3-glycerol phosphate synthase; TonB box, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41421.1.S1_at	A	A1TA	POPTR_0011s06880	POPTR_0011s06880 (9)	scaffold_11:7585891-7585967(-) (9)	POPTR_0005s22240 (8)//POPTR_0005s22230 (6)	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.41437.1.A1_at	A	A1TS	POPTR_0016s08060	POPTR_0016s08060 (11)	scaffold_16:5882909-5883446(-) (11)	NA	NA	NA	AT3G10120.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03890.1); Has 57 Blast hits to 57 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g127440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41444.1.A1_at	A	A1TS	POPTR_0016s12010	POPTR_0016s12010 (11)	scaffold_16:11229235-11229738(-) (11)	NA	Q8NT41	GDP-mannose-dependent alpha-mannosyltransferase	AT5G01220.1	sulfoquinovosyldiacylglycerol 2 	LOC_Os07g01030.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr3g024590.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.4147.1.S1_at	A	A1TS	POPTR_0004s02930	POPTR_0004s02930 (9)	scaffold_4:1963012-1963389(+) (9)	NA	Q9LK57	"Pentatricopeptide repeat-containing protein At3g13160, mitochondrial"	AT3G13160.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g57630.3	"pentatricopeptide containing protein, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41471.1.A1_at	A	A1TS	POPTR_0002s05490	POPTR_0002s05490 (11)	scaffold_2:3577825-3579972(-) (11)	NA	P0A4H1	Preprotein translocase subunit secY	AT2G31530.1	SecY protein transport family protein 	LOC_Os05g33020.1	"preprotein translocase subunit secY, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
PtpAffx.41480.1.S1_at	A	A1TS	POPTR_0006s00680	POPTR_0006s00680 (11)	scaffold_6:363671-363948(+) (11)	NA	O14214	tRNA (guanine-N(1)-)-methyltransferase	AT5G47680.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g49360.1	"RNA methyltransferase domain-containing protein 2, putative, expressed"	Medtr2g032680.1	tRNA (guanine-N1-)-methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41501.1.S1_s_at	A	A1TS	POPTR_0008s00310	POPTR_0008s00310 (11)	scaffold_8:90286-90998(+) (11)	POPTR_0010s26150 (7)	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT5G08570.1	Pyruvate kinase family protein 	LOC_Os04g58110.1	"pyruvate kinase, putative, expressed"	Medtr4g115180.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.41505.1.S1_s_at	A	A1TS	POPTR_0006s18710	POPTR_0006s18710 (11)	scaffold_6:17268674-17268731(-) (11)	NA	Q94CG0	CBL-interacting serine/threonine-protein kinase 21	AT5G57630.1	CBL-interacting protein kinase 21 	LOC_Os03g03510.1	"CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g128300.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.41523.1.A1_at	A	A1TS	POPTR_0014s08030	POPTR_0014s08030 (10)	scaffold_14:5962495-5963016(-) (10)	NA	NA	NA	AT4G00440.1	Protein of unknown function (DUF3741) 	LOC_Os04g47180.1	expressed protein	Medtr7g087380.1	"{, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4153.1.S1_at	A	A1TS	POPTR_0018s12280	POPTR_0018s12280 (9)	scaffold_18:12805224-12805986(+) (11)	NA	Q15029	116 kDa U5 small nuclear ribonucleoprotein component	AT1G06220.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os06g40600.1	"elongation factor, putative, expressed"	Medtr8g122550.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.41533.1.A1_at	A	A1TS	POPTR_0002s17040	POPTR_0002s17040 (11)	scaffold_2:12811614-12812182(-) (11)	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT4G01050.1	thylakoid rhodanese-like 	LOC_Os02g15750.1	expressed protein	AC233680_8.1	"coded for by A. thaliana cDNA T22670; coded for by A. thaliana cDNA T44720; coded for by A. thaliana cDNA T41991; coded for by A. thaliana cDNA AA042110, putative AC233680.1 46729-45900 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41539.1.S1_s_at	A	A1TS	POPTR_0001s25170	POPTR_0001s25170 (11)	scaffold_1:24375405-24375513(+) (11)	NA	P50165	Tropinone reductase homolog	AT2G29260.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.41559.1.S1_at	A	A1TS	POPTR_0006s01160	POPTR_0006s01160 (10)	scaffold_6:641479-641944(-) (10)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41560.1.A1_a_at	A	A1TS	POPTR_0002s12620	POPTR_0002s12620 (11)	scaffold_2:9407772-9407968(+) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os04g59330.1	expressed protein	Medtr4g155720.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.41572.1.A1_s_at	A	A1TS	POPTR_0005s23900	POPTR_0005s23900 (11)	scaffold_5:22608412-22608662(-) (11)	NA	Q99090	Light-inducible protein CPRF2	AT4G02640.2	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.41585.1.S1_at	A	A1TS	POPTR_0002s10990	POPTR_0002s10990 (11)	scaffold_2:8013940-8015442(-) (11)	NA	P50433	"Serine hydroxymethyltransferase, mitochondrial"	AT5G26780.1	serine hydroxymethyltransferase 2 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.41594.1.S1_at	A	A1TS	POPTR_0015s01010	POPTR_0015s01010 (10)	scaffold_15:590115-590541(+) (10)	NA	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.4160.1.S1_at	A	A1TS	POPTR_0002s05490	POPTR_0002s05490 (10)	scaffold_2:3575481-3576017(-) (10)	NA	P0A4H1	Preprotein translocase subunit secY	AT2G31530.1	SecY protein transport family protein 	LOC_Os05g33020.1	"preprotein translocase subunit secY, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
PtpAffx.41604.1.S1_s_at	A	A1TS	POPTR_0013s04820	POPTR_0013s04820 (9)	scaffold_13:3354022-3354447(+) (9)	NA	Q9M8Y0	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC	AT3G04240.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g68680.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41647.1.S1_a_at	A	A2TS	POPTR_0002s02580	POPTR_0005s25850 (11)//POPTR_0002s02580 (11)	scaffold_2:1478756-1479856(+) (11)//scaffold_5:24061285-24062640(-) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT1G19920.1	Pseudouridine synthase/archaeosine transglycosylase-like family protein 	LOC_Os04g02050.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
PtpAffx.41647.1.S1_x_at	A	A1TS	POPTR_0005s25850	POPTR_0005s25850 (9)	scaffold_5:24061122-24062677(-) (9)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT1G19920.1	Pseudouridine synthase/archaeosine transglycosylase-like family protein 	LOC_Os04g02050.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
PtpAffx.41647.2.S1_a_at	A	A1TS	POPTR_0005s25850	POPTR_0005s25850 (11)	scaffold_5:24060924-24061197(-) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT1G19920.1	Pseudouridine synthase/archaeosine transglycosylase-like family protein 	LOC_Os04g02050.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
PtpAffx.41647.3.A1_at	A	A1TS	POPTR_0002s02580	POPTR_0002s02580 (11)	scaffold_2:1478726-1480205(+) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT1G19920.1	Pseudouridine synthase/archaeosine transglycosylase-like family protein 	LOC_Os04g02050.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
PtpAffx.41678.1.S1_at	A	A1TS	POPTR_0001s40840	POPTR_0001s40840 (11)	scaffold_1:40443068-40443477(-) (11)	NA	Q9FMY1	Cytochrome P450 86B1	AT4G39490.1	"cytochrome P450, family 96, subfamily A, polypeptide 10 "	LOC_Os03g04680.1	"cytochrome P450, putative, expressed"	Medtr4g137010.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.41679.1.A1_at	A	A1TS	POPTR_0018s05230	POPTR_0018s05230 (11)	scaffold_18:4737335-4737562(-) (11)	NA	O42929	Translation machinery-associated protein 22	AT5G11900.1	Translation initiation factor SUI1 family protein 	LOC_Os01g09890.1	"translation initiation factor SUI1, putative, expressed"	Medtr7g024960.1	Density-regulated protein DRP1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.4168.2.S1_s_at	A	A1TS	POPTR_0003s11290	POPTR_0003s11290 (11)	scaffold_3:12150482-12151150(+) (11)	NA	Q43468	Heat shock protein STI	AT4G12400.2	"stress-inducible protein, putative "	LOC_Os02g43020.1	"heat shock protein STI, putative, expressed"	Medtr5g012180.1	Heat shock chaperonin-binding; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4168.3.A1_at	A	A1TS	POPTR_0001s07750	POPTR_0001s07750 (11)	scaffold_1:5870431-5870540(+) (11)	NA	Q43468	Heat shock protein STI	AT4G12400.2	"stress-inducible protein, putative "	LOC_Os02g43020.1	"heat shock protein STI, putative, expressed"	Medtr5g012180.1	Heat shock chaperonin-binding; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41681.1.A1_at	A	A1TS	POPTR_0001s27470	POPTR_0001s27470 (11)	scaffold_1:26376897-26378642(-) (11)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT3G63530.2	RING/U-box superfamily protein 	LOC_Os03g07790.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g037050.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41688.1.S1_at	A	A1TS	POPTR_0003s17420	POPTR_0003s17420 (10)	scaffold_3:16760958-16761036(+) (10)	NA	NA	NA	AT1G04670.1	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 2; Bacteria - 5; Metazoa - 1; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41698.1.S1_at	A	A1TA	POPTR_0005s23790	POPTR_0005s23790 (10)	scaffold_5:22535325-22535485(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.417.2.S1_at	A	A1TS	POPTR_0009s06920	POPTR_0009s06920 (11)	scaffold_9:6584023-6585113(-) (11)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.417.3.A1_a_at	A	A3TS	POPTR_0001s27720	POPTR_0001s27750 (11)//POPTR_0001s27730 (11)//POPTR_0001s27720 (11)	scaffold_1:26576626-26577298(-) (11)//scaffold_1:26584607-26585279(-) (11)//scaffold_1:26599460-26600134(-) (11)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.4170.1.A1_x_at	A	A1TS	POPTR_0008s18230	POPTR_0008s18230 (11)	scaffold_8:12204381-12204701(-) (11)	NA	P80470	"Photosystem II core complex proteins psbY, chloroplastic"	AT1G67740.1	photosystem II BY 	LOC_Os08g02630.1	"photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed"	Medtr3g102830.1	"Photosystem II core complex proteins psbY, chloroplast precursor, putative "	GO:0015979|photosynthesis	GO:0030145|manganese ion binding	GO:0016021|integral to membrane||GO:0009523|photosystem II
PtpAffx.4170.2.S1_at	A	A1TS	POPTR_0014s14830	POPTR_0014s14830 (11)	scaffold_14:10870333-10870846(-) (11)	NA	Q8H102	Transcription factor bHLH128	AT1G05805.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g67480.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g147140.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.4170.3.S1_at	A	A1TA	POPTR_0014s14830	POPTR_0014s14830 (11)	scaffold_14:10877647-10878101(+) (11)	NA	Q8H102	Transcription factor bHLH128	AT1G05805.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g67480.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g147140.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.4170.4.A1_at	A	A1TS	POPTR_0002s23260	POPTR_0002s23260 (10)	scaffold_2:20737660-20738091(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41709.1.S1_at	A	A1MA	POPTR_0006s10370	POPTR_0006s10370 (11)	scaffold_6:7772256-7772661(+) (11)	NA	Q9M6N7	Ammonium transporter 2	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr7g075790.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.41718.1.S1_at	A	A1TS	POPTR_0012s05520	POPTR_0012s05520 (11)	scaffold_12:5172478-5172839(-) (11)	NA	Q41651	"Peptidyl-prolyl cis-trans isomerase, chloroplastic"	AT1G74070.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g02080.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g116500.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.41719.1.S1_s_at	A	A2TS	POPTR_0012s03160	POPTR_1526s00200 (11)//POPTR_0012s03160 (11)	scaffold_12:2511627-2511906(+) (11)//scaffold_1526:1422-1704(-) (11)	NA	P09379	GTPase-activating protein GYP7	AT3G49350.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.4172.1.S1_at	A	A1TS	POPTR_0002s04340	POPTR_0002s04340 (11)	scaffold_2:2714262-2714506(+) (11)	NA	O81117	Cytochrome P450 94A1	AT3G48520.1	"cytochrome P450, family 94, subfamily B, polypeptide 3 "	LOC_Os03g12260.1	"cytochrome P450 protein, putative, expressed"	Medtr3g109650.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.41723.1.S1_at	A	A1MS	POPTR_0001s28350	POPTR_0001s28350 (9)	scaffold_1:27146054-27146346(+) (9)	NA	NA	NA	AT4G03250.1	Homeodomain-like superfamily protein 	LOC_Os01g48170.1	homeobox domain containing protein	Medtr5g096920.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.41728.1.S1_s_at	A	A1TS	POPTR_0014s08250	POPTR_0014s08250 (11)	scaffold_14:6130329-6130552(-) (11)	NA	NA	NA	AT2G46040.1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein 	LOC_Os04g08410.1	"ELM2 domain containing protein, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41731.1.S1_at	A	A1TS	POPTR_0014s02400	POPTR_0014s02400 (9)	scaffold_14:2005681-2006159(+) (9)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT1G60060.1	Serine/threonine-protein kinase WNK (With No Lysine)-related 	LOC_Os06g12740.1	expressed protein	Medtr1g023870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41739.1.S1_at	A	A1TS	POPTR_0018s01500	POPTR_0018s01500 (11)	scaffold_18:1433819-1434270(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41770.1.S1_at	A	A1TS	POPTR_0018s10500	POPTR_0018s10500 (11)	scaffold_18:11415991-11418960(+) (11)	NA	Q96361	ADP-ribosylation factor 1	AT2G24765.1	ADP-ribosylation factor 3 	LOC_Os08g15040.1	"ADP-ribosylation factor, putative, expressed"	Medtr8g128220.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.41770.2.S1_at	A	A1TS	POPTR_0006s18730	POPTR_0006s18730 (11)	scaffold_6:17298009-17300142(+) (11)	NA	Q96361	ADP-ribosylation factor 1	AT2G24765.1	ADP-ribosylation factor 3 	LOC_Os08g15040.1	"ADP-ribosylation factor, putative, expressed"	Medtr8g128220.1	ARF/SAR superfamily 	NA	GO:0005525|GTP binding	NA
PtpAffx.41770.3.S1_at	A	A1MS	POPTR_0018s10500	POPTR_0018s10500 (11)	scaffold_18:11418204-11418526(+) (11)	NA	Q96361	ADP-ribosylation factor 1	AT2G24765.1	ADP-ribosylation factor 3 	LOC_Os08g15040.1	"ADP-ribosylation factor, putative, expressed"	Medtr8g128220.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.41784.1.S1_at	A	A1TS	POPTR_0013s07730	POPTR_0013s07730 (10)	scaffold_13:6571700-6572527(-) (10)	NA	Q84T61	Heat stress transcription factor A-1	AT5G16820.2	heat shock factor 3 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g107610.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41790.1.S1_at	A	A1TS	POPTR_0005s16270	POPTR_0005s16270 (11)	scaffold_5:12968598-12969060(+) (11)	NA	Q6GQJ2	Protein Jade-1	AT1G77800.1	PHD finger family protein 	LOC_Os02g52960.1	"PHD-finger domain containing protein, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41797.1.S1_at	A	A1TS	POPTR_0001s23160	POPTR_0001s23160 (11)	scaffold_1:22425305-22425855(+) (11)	NA	B7K911	Urease accessory protein ureF	AT1G21840.1	urease accessory protein F 	LOC_Os02g07150.3	"urease accessory protein F, putative, expressed"	Medtr5g095660.2	"urease accessory protein UreF, putative "	GO:0006807|nitrogen compound metabolic process	GO:0016151|nickel ion binding	NA
PtpAffx.41807.1.S1_at	A	A1TS	POPTR_0003s10440	POPTR_0003s10440 (10)	scaffold_3:11422040-11422206(-) (10)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT2G35615.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g34920.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr5g088120.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41816.1.S1_at	A	A1TS	POPTR_0004s03870	POPTR_0004s03870 (11)	scaffold_4:2751913-2752297(-) (11)	NA	P43311	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os01g58100.1	"polyphenol oxidase, putative"	Medtr4g042530.1	Di-copper centre-containing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41823.1.S1_at	A	A1TS	POPTR_0003s04120	POPTR_0003s04120 (9)	scaffold_3:4778356-4778585(+) (9)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41826.1.S1_at	A	A1TS	POPTR_0010s09880	POPTR_0010s09880 (10)	scaffold_10:10494301-10494411(-) (10)	NA	Q9LHA8	Heat shock cognate 70 kDa protein 4	AT2G32120.2	heat-shock protein 70T-2 	LOC_Os03g11910.2	"DnaK family protein, putative, expressed"	Medtr5g006270.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41827.1.S1_at	A	A1MA	POPTR_0006s29000	POPTR_0006s29000 (10)	scaffold_6:26507536-26507809(+) (10)	NA	Q8LAZ7	COP9 signalosome complex subunit 5b	AT1G22920.1	COP9 signalosome 5A 	LOC_Os04g56070.1	"COP9 signalosome complex subunit 5b, putative, expressed"	Medtr3g133410.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4184.1.S1_at	A	A1TS	POPTR_0007s02000	POPTR_0007s02000 (11)	scaffold_7:1155978-1156490(+) (11)	NA	Q9LX31	"Tetrapyrrole-binding protein, chloroplastic"	AT3G59400.1	enzyme binding;tetrapyrrole binding 	LOC_Os11g16550.1	"uncharacterized protein ycf53, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41858.1.A1_s_at	A	A1TS	POPTR_0011s05320	POPTR_0011s05320 (11)	scaffold_11:5232302-5232723(+) (11)	NA	Q9FLI1	Transcription factor bHLH36	AT4G20970.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01870.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g017430.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.41880.1.S1_s_at	A	A1TS	POPTR_0003s01420	POPTR_0003s01420 (11)	scaffold_3:1291251-1291874(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140360.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.41884.1.S1_at	A	A1MS	POPTR_0011s10740	POPTR_0011s10740 (11)	scaffold_11:13321797-13322214(-) (11)	NA	NA	NA	AT3G14850.2	TRICHOME BIREFRINGENCE-LIKE 41 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g064330.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41915.1.S1_at	A	A1TS	POPTR_0005s03840	POPTR_0005s03840 (10)	scaffold_5:2549059-2549223(-) (10)	NA	NA	NA	AT5G19090.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.41934.1.S1_at	A	A1MS	POPTR_0004s19400	POPTR_0004s19400 (11)	scaffold_4:19252839-19252937(+) (11)	NA	Q4V8J4	Glycerol-3-phosphate acyltransferase 3	AT5G60620.1	glycerol-3-phosphate acyltransferase 9 	LOC_Os07g34730.1	"acyltransferase, putative, expressed"	Medtr8g129160.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.41939.1.S1_at	A	A1TS	POPTR_0013s12730	POPTR_0013s12730 (11)	scaffold_13:13402560-13403609(-) (11)	NA	Q9LLH9	"Acyl-coenzyme A oxidase 3, peroxisomal"	AT1G06290.1	acyl-CoA oxidase 3 	LOC_Os06g24704.1	"acyl-coenzyme A oxidase, putative, expressed"	Medtr4g109110.1	"Carbohydrate kinase, PfkB; Acyl-CoA dehydrogenase C-terminal-like; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.41947.1.S1_at	A	A1TS	POPTR_0002s03690	POPTR_0002s03690 (10)	scaffold_2:2289908-2290880(-) (10)	NA	Q80W71	Pleckstrin homology domain-containing family A member 8	AT2G33470.2	glycolipid transfer protein 1 	LOC_Os02g40890.2	"GLTP domain containing protein, putative, expressed"	Medtr1g090290.1	"Pleckstrin homology domain-containing family A member 8, related "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.41952.1.A1_a_at	A	A1TS	POPTR_0004s05160	POPTR_0004s05160 (11)	scaffold_4:3908022-3908327(+) (11)	NA	Q9BZZ5	Apoptosis inhibitor 5	AT2G34040.1	Apoptosis inhibitory protein 5 (API5) 	LOC_Os02g20930.1	"apoptosis inhibitor 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41959.1.A1_at	A	A1TS	POPTR_0001s28180	POPTR_0001s28180 (11)	scaffold_1:26950304-26950656(-) (11)	NA	Q1PFH7	Pentatricopeptide repeat-containing protein At1g62350	AT1G62350.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g18620.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g034630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4196.3.S1_a_at	A	A1TS	POPTR_0006s08550	POPTR_0006s08550 (11)	scaffold_6:6231032-6232420(+) (11)	NA	Q922B2	"Aspartyl-tRNA synthetase, cytoplasmic"	AT4G31180.2	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os02g46130.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr1g016920.1	"Aspartyl-tRNA synthetase bacterial/mitochondrial type; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.41964.1.S1_at	A	A1TA	POPTR_0018s05440	POPTR_0018s05440 (10)	scaffold_18:4994651-4995169(-) (11)	NA	NA	NA	AT5G15500.2	Ankyrin repeat family protein 	LOC_Os11g08020.1	"ankyrin repeat family protein, putative, expressed"	Medtr7g118040.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41969.1.A1_at	A	A1TS	POPTR_0003s17350	POPTR_0003s17350 (11)	scaffold_3:16728924-16728958(+) (11)	NA	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT2G33170.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g42700.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.4198.1.S1_at	A	A1TS	POPTR_0008s13730	POPTR_0008s13730 (11)	scaffold_8:9056379-9056680(+) (11)	NA	Q39263	Zinc finger protein 4	AT1G66140.1	zinc finger protein 4 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	CU633465_4.1	"Zinc finger, C2H2-type CU633465.7 18485-19791 F EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.41983.1.S1_at	A	A1TS	POPTR_0008s09880	POPTR_0008s09880 (11)	scaffold_8:6135863-6137596(+) (11)	NA	Q9LRP7	Autophagy-related protein 8i	AT3G15580.1	Ubiquitin-like superfamily protein 	LOC_Os11g01010.1	"autophagy-related protein 8D, putative, expressed"	Medtr8g134240.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41989.1.S1_s_at	A	A1TS	POPTR_0004s02210	POPTR_0004s02210 (11)	scaffold_4:1373260-1373609(+) (11)	NA	Q8GVP6	"Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic"	AT4G21210.1	PPDK regulatory protein 	LOC_Os07g34640.2	"pyruvate Pi dikinase regulatory protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42000.1.S1_at	A	A1TS	POPTR_0008s01280	POPTR_0008s01280 (9)	scaffold_8:624520-625320(+) (9)	NA	NA	NA	AT5G04910.1	unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os01g16080.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42005.1.A1_s_at	A	A1TS	POPTR_0016s14520	POPTR_0016s14520 (11)	scaffold_16:13724348-13724438(-) (11)	NA	NA	NA	AT5G01910.1	unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42013.1.S1_at	A	A1TS	POPTR_0001s10830	POPTR_0001s10830 (10)	scaffold_1:8415257-8417019(+) (10)	NA	Q9LJD7	Constitutive photomorphogenesis protein 10	AT3G13550.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os07g38940.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g134040.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.42015.1.S1_at	A	A1TS	POPTR_0011s09640	POPTR_0011s09640 (11)	scaffold_11:12032726-12033268(+) (11)	NA	Q8GY23	E3 ubiquitin-protein ligase UPL1	AT1G55860.2	ubiquitin-protein ligase 1 	LOC_Os09g07900.1	"ubiquitin-protein ligase 1, putative, expressed"	Medtr5g075640.1	"HECT; Ubiquitin interacting motif; UBA-like; DUF913, E3 ubiquitin ligase TOM1; "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.42018.1.A1_at	A	A1TS	POPTR_0003s07310	POPTR_0003s07310 (9)	scaffold_3:8877393-8877636(+) (9)	NA	NA	NA	AT1G31040.1	PLATZ transcription factor family protein 	LOC_Os06g45540.1	"zinc-binding protein, putative, expressed"	Medtr8g122390.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.42020.1.A1_at	A	A1MS	POPTR_0005s02720	POPTR_0005s02720 (9)	scaffold_5:1735299-1735792(-) (9)	NA	NA	NA	AT3G05410.2	Photosystem II reaction center PsbP family protein 	LOC_Os01g70820.1	"lumenal PsbP, putative, expressed"	Medtr1g099660.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42034.1.A1_s_at	A	A1TS	POPTR_0010s14790	POPTR_0010s14790 (11)	scaffold_10:14271360-14271993(-) (11)	NA	NA	NA	AT2G03810.4	18S pre-ribosomal assembly protein gar2-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4206.1.S1_at	A	A2TS	POPTR_0008s07080	POPTR_0008s07080 (9)//POPTR_0010s19410 (9)	scaffold_10:17323485-17323725(-) (9)//scaffold_8:4300229-4300662(+) (9)	NA	NA	NA	AT3G56010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g094170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42065.1.S1_at	A	A1TS	POPTR_0009s06270	POPTR_0009s06270 (11)	scaffold_9:6079634-6080740(+) (11)	NA	P51104	Dihydroflavonol-4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.42070.1.S1_s_at	A	A1TS	POPTR_0016s12750	POPTR_0016s12750 (11)	scaffold_16:12126663-12126728(+) (11)	NA	Q80TN4	DnaJ homolog subfamily C member 16	AT3G08970.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os03g18200.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g075620.1	"Heat shock protein DnaJ, N-terminal; Thioredoxin-like fold "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.4208.2.S1_a_at	A	A1TS	POPTR_0018s10970	POPTR_0018s10970 (11)	scaffold_18:11799820-11800298(+) (11)	NA	Q3ZBR5	Tetratricopeptide repeat protein 1	AT4G30480.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g34540.1	"tetratricopeptide repeat protein 1, putative, expressed"	Medtr7g065330.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42091.1.A1_at	A	A1TS	POPTR_0009s13060	POPTR_0009s13060 (11)	scaffold_9:10498673-10499206(+) (11)	NA	NA	NA	AT4G38810.2	Calcium-binding EF-hand family protein 	LOC_Os10g09850.1	"EF hand family protein, putative, expressed"	Medtr3g163200.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42091.2.S1_a_at	A	A2TS	POPTR_0004s17420	POPTR_0009s13060 (11)//POPTR_0004s17420 (11)	scaffold_4:17625307-17625397(+) (11)//scaffold_9:10497826-10497916(+) (11)	NA	NA	NA	AT4G38810.2	Calcium-binding EF-hand family protein 	LOC_Os10g09850.1	"EF hand family protein, putative, expressed"	Medtr3g163200.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42091.2.S1_at	A	A1TS	POPTR_0004s17420	POPTR_0004s17420 (11)	scaffold_4:17623410-17625527(+) (11)	POPTR_0009s13060 (6)	NA	NA	AT4G38810.2	Calcium-binding EF-hand family protein 	LOC_Os10g09850.1	"EF hand family protein, putative, expressed"	Medtr3g163200.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42093.1.A1_at	A	A1TS	POPTR_0001s13090	POPTR_0001s13090 (9)	scaffold_1:10178542-10179107(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.421.1.A1_at	A	A1TS	POPTR_0015s10500	POPTR_0015s10500 (9)	scaffold_15:11403151-11403452(-) (9)	NA	O94514	Nucleolar protein 56	AT1G56110.1	homolog of nucleolar protein NOP56 	LOC_Os03g22880.1	"nucleolar protein 5A, putative, expressed"	Medtr8g109560.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOP5, N-terminal; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42102.1.S1_s_at	A	A1TS	POPTR_0001s09950	POPTR_0001s09950 (11)	scaffold_1:7683688-7683981(+) (11)	NA	NA	NA	AT1G64050.1	unknown protein; Has 524 Blast hits to 342 proteins in 101 species: Archae - 0; Bacteria - 106; Metazoa - 106; Fungi - 24; Plants - 25; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). 	LOC_Os02g16600.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42106.1.A1_at	A	A1MA	POPTR_0014s00490	POPTR_0014s00490 (9)	scaffold_14:210413-211328(-) (9)//scaffold_14:388940-389865(-) (9)	POPTR_0014s01190 (8)	Q9FKG6	U-box domain-containing protein 52	AT1G16760.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os06g09230.2	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.42120.1.A1_at	A	A1TS	POPTR_0009s04310	POPTR_0009s04310 (11)	scaffold_9:4744292-4744740(+) (11)	NA	Q9STF9	Pentatricopeptide repeat-containing protein At3g46870	AT3G46870.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g36450.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g034630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42120.2.A1_a_at	A	A1TS	POPTR_0009s04310	POPTR_0009s04310 (11)	scaffold_9:4743526-4743763(+) (11)	NA	Q9STF9	Pentatricopeptide repeat-containing protein At3g46870	AT3G46870.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g36450.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g034630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42125.2.A1_at	A	A1TA	POPTR_0015s05760	POPTR_0015s05760 (9)	scaffold_15:6111387-6116433(+) (9)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g49830.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.42131.1.S1_at	A	A1TS	POPTR_0007s15330	POPTR_0007s15330 (9)	scaffold_7:14896555-14896989(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42132.1.A1_at	A	A1TS	POPTR_0007s02070	POPTR_0007s02070 (11)	scaffold_7:1216781-1217209(-) (11)	NA	O24304	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	AT3G59380.1	farnesyltransferase A 	LOC_Os09g33930.3	"farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed"	Medtr2g118180.1	Protein prenyltransferase 	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity	NA
PtpAffx.42166.1.A1_at	A	A1TS	POPTR_0012s08370	POPTR_0012s08370 (11)	scaffold_12:9462291-9463924(-) (11)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.4217.1.A1_s_at	A	A1TS	POPTR_0002s13930	POPTR_0002s13930 (11)	scaffold_2:10336534-10337621(+) (11)	NA	Q05737	GTP-binding protein YPTM2	AT1G02130.1	RAS 5 	LOC_Os02g43690.1	"ras-related protein, putative, expressed"	Medtr7g093170.1	"Ras GTPase; Sigma-54 factor, interaction region "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.4217.2.S1_s_at	A	A1TS	POPTR_0014s04830	POPTR_0014s04830 (11)	scaffold_14:3735703-3736955(-) (11)	NA	P28188	Ras-related protein RABD2A	AT1G02130.1	RAS 5 	LOC_Os02g43690.1	"ras-related protein, putative, expressed"	Medtr7g093170.1	"Ras GTPase; Sigma-54 factor, interaction region "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.42172.1.S1_at	A	A1TS	POPTR_0015s08550	POPTR_0015s08550 (11)	scaffold_15:9844565-9844835(+) (11)	NA	O80742	U-box domain-containing protein 19	AT1G60190.1	ARM repeat superfamily protein 	LOC_Os08g32060.1	"spotted leaf 11, putative, expressed"	Medtr8g125550.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.42186.1.A1_at	A	A1TS	POPTR_0013s10400	POPTR_0013s10400 (11)	scaffold_13:10625033-10625510(-) (11)	NA	NA	NA	AT4G32480.1	Protein of unknown function (DUF506)  	LOC_Os01g54340.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr5g008790.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4219.1.S1_at	A	A1TS	POPTR_0006s11430	POPTR_0006s11430 (11)	scaffold_16:14045459-14045798(+) (10)//scaffold_6:8660911-8661249(+) (11)	NA	Q9FM85	Probable receptor-like protein kinase At5g56460	AT5G01020.1	Protein kinase superfamily protein 	LOC_Os12g02810.1	"protein kinase domain containing protein, expressed"	Medtr7g081040.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.42195.1.S1_at	A	A1TS	POPTR_0004s09680	POPTR_0004s09680 (11)	scaffold_4:8193670-8194204(-) (11)	NA	Q39208	Delta(7)-sterol-C5(6)-desaturase 1	AT3G02580.1	sterol 1 	LOC_Os01g04260.1	"fatty acid hydroxylase, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.42203.1.A1_at	A	A1TS	POPTR_0003s03950	POPTR_0003s03950 (9)	scaffold_3:4536664-4536787(-) (9)	NA	Q9FVX2	"Pentatricopeptide repeat-containing protein At1g77360, mitochondrial"	AT1G77360.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g44030.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g086640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42221.1.A1_s_at	A	A1TS	POPTR_0001s16300	POPTR_0001s16300 (11)	scaffold_1:13102412-13102821(+) (11)	NA	P52894	Alanine aminotransferase 2	AT1G72330.1	alanine aminotransferase 2 	LOC_Os07g42600.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr8g026620.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.42238.1.A1_s_at	A	A1TS	POPTR_0001s36330	POPTR_0001s36330 (11)	scaffold_1:34892862-34893279(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.1	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4227.1.S1_at	A	A1TS	POPTR_0012s13320	POPTR_0012s13320 (11)	scaffold_12:13526961-13527459(+) (11)	NA	P18674	Agglutinin alpha chain	AT1G73040.1	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.1	"jacalin-like lectin domain containing protein, expressed"	Medtr2g121890.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42272.1.A1_at	A	A1MS	POPTR_0019s00330	POPTR_0019s00330 (10)	scaffold_19:107474-107948(+) (10)	NA	Q9C810	PHD finger protein At1g33420	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g65600.1	"PHD-finger domain containing protein, putative, expressed"	Medtr4g041260.1	"Protein of unknown function UPF0054; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42275.1.A1_at	A	A1TS	POPTR_0006s24530	POPTR_0006s24530 (10)	scaffold_6:23119754-23120257(+) (10)	NA	Q66GS2	"Probable beta-1,3-galactosyltransferase 12"	AT2G26100.1	Galactosyltransferase family protein 	LOC_Os06g06280.2	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.4228.1.S1_at	A	A1TS	POPTR_0009s06360	POPTR_0009s06360 (11)	scaffold_9:6155632-6156838(-) (11)	NA	Q9LM02	Cycloartenol-C-24-methyltransferase	AT5G13710.2	sterol methyltransferase 1 	LOC_Os07g10600.1	"cycloartenol-C-24-methyltransferase 1, putative, expressed"	Medtr3g039530.1	Methyltransferase type 11 	GO:0006694|steroid biosynthetic process	GO:0008168|methyltransferase activity	NA
PtpAffx.4229.1.S1_at	A	A1TS	POPTR_0008s13050	POPTR_0008s13050 (10)	scaffold_8:8510305-8511011(-) (10)	NA	Q9ZVF3	MLP-like protein 328	AT1G14930.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr1g034930.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.42298.1.A1_at	A	A1TS	POPTR_0001s17360	POPTR_0001s17360 (11)	scaffold_1:14162053-14162260(-) (11)	NA	Q9WTL7	Acyl-protein thioesterase 2	AT3G15650.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g07960.3	"acyl-protein thioesterase, putative, expressed"	Medtr2g125780.1	Phospholipase/Carboxylesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.42299.1.A1_at	A	A1TS	POPTR_0005s25080	POPTR_0005s25080 (11)	scaffold_5:23421701-23421934(-) (11)	NA	P34066	Proteasome subunit alpha type-1-A	AT5G42790.1	proteasome alpha subunit F1 	LOC_Os02g04100.1	"peptidase, T1 family, putative, expressed"	Medtr4g008970.1	"20S proteasome, A and B subunits "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.4238.1.S1_at	A	A1TS	POPTR_0002s01740	POPTR_0002s01740 (9)	scaffold_2:927166-927699(+) (10)	NA	P11970	"Plastocyanin B, chloroplastic"	AT1G76100.1	plastocyanin 1 	LOC_Os06g01210.1	"plastocyanin, chloroplast precursor, putative, expressed"	Medtr3g157410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.42385.1.S1_at	A	A1TS	POPTR_0001s37650	POPTR_0001s37650 (11)	scaffold_1:36639974-36640119(+) (11)	NA	Q9FM65	Fasciclin-like arabinogalactan protein 1	AT5G55730.2	FASCICLIN-like arabinogalactan 1 	LOC_Os08g23180.1	"fasciclin-like arabinogalactan protein 8 precursor, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42389.1.A1_a_at	A	A1TS	POPTR_0008s14740	POPTR_0008s14740 (11)	scaffold_8:9784142-9784649(+) (11)	NA	O49840	"Protein kinase 2B, chloroplastic"	AT2G02800.2	protein kinase 2B 	LOC_Os03g07430.1	"protein kinase domain containing protein, expressed"	Medtr5g039900.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.42389.2.A1_a_at	A	A1TS	POPTR_0008s14740	POPTR_0008s14740 (11)	scaffold_8:9784177-9784674(+) (11)	NA	O49840	"Protein kinase 2B, chloroplastic"	AT2G02800.2	protein kinase 2B 	LOC_Os03g07430.1	"protein kinase domain containing protein, expressed"	Medtr5g039900.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.42410.1.S1_at	A	A1TS	POPTR_0001s10090	POPTR_0001s10090 (11)	scaffold_1:7816725-7816768(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42410.1.S1_s_at	A	A1TS	POPTR_0001s10090	POPTR_0001s10090 (11)	scaffold_1:7816408-7816563(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42455.1.S1_at	A	A1TS	POPTR_0003s19130	POPTR_0003s19130 (11)	scaffold_3:17933166-17933328(+) (11)	NA	A0JPP1	Dr1-associated corepressor	AT3G12480.1	"nuclear factor Y, subunit C11 "	LOC_Os05g41450.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g044480.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.42455.1.S1_s_at	A	A1TS	POPTR_0003s19130	POPTR_0003s19130 (11)	scaffold_3:17932886-17933158(+) (11)	NA	A0JPP1	Dr1-associated corepressor	AT3G12480.1	"nuclear factor Y, subunit C11 "	LOC_Os05g41450.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g044480.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.4246.2.S1_a_at	A	A2TS	POPTR_0019s15090	POPTR_0019s15090 (10)//POPTR_0019s15100 (9)	scaffold_19:15691457-15692054(+) (10)//scaffold_19:15697503-15698024(+) (10)	NA	P25317	Probable glutathione S-transferase parA	AT1G17180.1	glutathione S-transferase TAU 25 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42470.1.S1_s_at	A	A2TS	POPTR_0001s02640	POPTR_0001s02640 (11)//POPTR_0003s08940 (11)	scaffold_1:2082983-2084186(+) (11)//scaffold_3:10227872-10229125(+) (11)	NA	P54672	AP-2 complex subunit mu	AT5G46630.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os02g46510.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g014510.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.42507.1.S1_at	A	A1MS	POPTR_0004s20910	POPTR_0004s20910 (10)	scaffold_4:20277974-20278594(-) (10)	NA	Q6NZ07	Nicalin-1	AT3G44330.1	"INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). "	LOC_Os08g01180.1	"nicalin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42507.1.S1_s_at	A	A1TS	POPTR_0004s20910	POPTR_0004s20910 (11)	scaffold_4:20277778-20278539(-) (11)	NA	Q6NZ07	Nicalin-1	AT3G44330.1	"INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). "	LOC_Os08g01180.1	"nicalin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42515.1.A1_at	A	A1TS	POPTR_0011s03530	POPTR_0011s03530 (11)	scaffold_11:3605923-3606440(-) (11)	NA	NA	NA	AT1G11440.1	BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 19337 Blast hits to 8589 proteins in 488 species: Archae - 26; Bacteria - 641; Metazoa - 7852; Fungi - 2167; Plants - 955; Viruses - 616; Other Eukaryotes - 7080 (source: NCBI BLink). 	NA	NA	Medtr2g011050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42523.1.S1_a_at	A	A2TS	POPTR_0001s17450	POPTR_0001s17450 (11)//POPTR_0003s05820 (11)	scaffold_1:14244175-14244455(+) (11)//scaffold_3:7201569-7201849(-) (11)	NA	Q54LT8	Serine-threonine kinase receptor-associated protein	AT1G52730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g11060.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g104760.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42523.1.S1_at	A	A1TS	POPTR_0001s17450	POPTR_0001s17450 (11)	scaffold_1:14244303-14244730(+) (11)	NA	Q54LT8	Serine-threonine kinase receptor-associated protein	AT1G52730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g11060.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g104760.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42523.2.A1_at	A	A1TS	POPTR_0003s05820	POPTR_0003s05820 (11)	scaffold_3:7201516-7202310(-) (11)	NA	Q54LT8	Serine-threonine kinase receptor-associated protein	AT3G15610.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g11060.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g104760.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42535.1.A1_at	A	A1TS	POPTR_0014s16220	POPTR_0014s16220 (11)	scaffold_14:12315624-12316130(+) (11)	NA	Q9SI37	WRKY transcription factor 1	AT2G04880.2	zinc-dependent activator protein-1 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.4260.1.A1_at	A	A1TS	POPTR_0007s14390	POPTR_0007s14390 (11)	scaffold_7:14183870-14185508(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G65380.1	MATE efflux family protein 	LOC_Os03g08900.1	"MATE efflux family protein, putative, expressed"	Medtr5g034130.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.42627.2.A1_at	A	A1TA	POPTR_0015s06000	POPTR_0015s06000 (9)	scaffold_15:6295055-6302036(+) (9)	POPTR_0015s05990 (8)	P36910	Acidic endochitinase SE2	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr1g125760.1	"Glycoside hydrolase, chitinase active site "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.42648.1.S1_at	A	A1TS	POPTR_0005s21330	POPTR_0005s21330 (11)	scaffold_5:20433735-20436452(-) (11)	NA	P48504	Cytochrome b-c1 complex subunit 6	AT1G15120.1	Ubiquinol-cytochrome C reductase hinge protein 	LOC_Os11g06340.2	"ubiquinol-cytochrome C reductase hinge protein, putative, expressed"	Medtr2g008190.1	Ubiquinol-cytochrome C reductase hinge protein 	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
PtpAffx.42660.1.S1_at	A	A1TS	POPTR_0012s07230	POPTR_0012s07230 (10)	scaffold_12:8012576-8014003(-) (10)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os05g51420.2	"hypersensitive-induced response protein, putative, expressed"	Medtr8g112900.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42665.2.S1_a_at	A	A2TS	POPTR_0001s16310	POPTR_0003s07010 (11)//POPTR_0001s16310 (11)	scaffold_1:13104484-13106340(-) (11)//scaffold_3:8619277-8621050(+) (11)	NA	Q9M4T8	Proteasome subunit alpha type-5	AT3G14290.1	20S proteasome alpha subunit E2 	LOC_Os11g40140.1	"peptidase, T1 family, putative, expressed"	Medtr6g013750.1	"20S proteasome, A and B subunits "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.42665.3.S1_a_at	A	A1TS	POPTR_0001s16310	POPTR_0001s16310 (11)	scaffold_1:13104343-13106389(-) (11)	NA	Q9M4T8	Proteasome subunit alpha type-5	AT3G14290.1	20S proteasome alpha subunit E2 	LOC_Os11g40140.1	"peptidase, T1 family, putative, expressed"	Medtr6g013750.1	"20S proteasome, A and B subunits "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.4267.1.S1_at	A	A1TS	POPTR_0001s40560	POPTR_0001s40560 (11)	scaffold_1:40046053-40047251(+) (11)	NA	NA	NA	AT5G39080.1	HXXXD-type acyl-transferase family protein 	NA	NA	Medtr7g073580.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42674.1.A1_a_at	A	A1TS	POPTR_0008s05210	POPTR_0008s05210 (11)	scaffold_8:3023284-3023766(+) (11)	NA	Q9FVI2	Actin-depolymerizing factor 1	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.42674.2.S1_at	A	A1TS	POPTR_0010s21560	POPTR_0010s21560 (11)	scaffold_10:18790881-18791507(-) (11)	NA	Q9FVI2	Actin-depolymerizing factor 1	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.42690.1.A1_at	A	A1TS	POPTR_0018s04800	POPTR_0018s04800 (11)	scaffold_18:4176156-4176567(-) (11)	NA	O88480	Calcineurin-binding protein cabin-1	AT4G32820.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g48100.1	expressed protein	Medtr3g128160.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42697.1.A1_at	A	A1TS	POPTR_0002s08110	POPTR_0002s08110 (11)	scaffold_2:5598501-5598997(-) (11)	NA	Q9XI07	SWI/SNF complex subunit SWI3C	AT1G21700.1	SWITCH/sucrose nonfermenting 3C 	LOC_Os11g08080.1	"SWIRM domain containing protein, expressed"	Medtr3g100590.1	SWIRM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42700.1.A1_at	A	A1TS	POPTR_0001s12710	POPTR_0001s12710 (11)	scaffold_1:9851715-9852128(-) (11)	NA	NA	NA	AT3G16510.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr7g099470.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42709.1.A1_at	A	A1TS	POPTR_0001s33960	POPTR_0001s33960 (11)	scaffold_1:32120570-32121005(-) (11)	NA	Q41001	Blue copper protein	AT3G27200.1	Cupredoxin superfamily protein 	LOC_Os04g46130.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr6g025590.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.42720.1.S1_s_at	A	A1TS	POPTR_0009s07200	POPTR_0009s07200 (11)	scaffold_9:6776311-6777499(-) (11)	NA	Q55DL0	Dihydropyrimidinase	AT5G12200.1	pyrimidine 2 	LOC_Os01g59340.3	"dihydropyrimidinase, putative, expressed"	Medtr5g096380.1	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.4273.2.S1_a_at	A	A1TS	POPTR_0004s12090	POPTR_0004s12090 (11)	scaffold_4:11014933-11015383(-) (11)	NA	Q6PH85	DCN1-like protein 2	AT3G28970.1	Domain of unknown function (DUF298) 	LOC_Os07g43720.1	"DCN1, putative, expressed"	Medtr7g010140.1	Protein of unknown function DUF298 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4277.1.S1_a_at	A	A1TS	POPTR_0004s10120	POPTR_0004s10120 (11)	scaffold_4:8689927-8690028(+) (11)	NA	Q9SP07	14-3-3-like protein	AT3G02520.1	general regulatory factor 7 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.42772.1.S1_at	A	A1TS	POPTR_0006s00930	POPTR_0006s00930 (11)	scaffold_6:525436-529512(-) (11)	POPTR_0006s00920 (6)	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21790.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g32010.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g097770.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42782.1.S1_at	A	A1TS	POPTR_0015s04970	POPTR_0015s04970 (11)	scaffold_15:5193631-5193929(-) (11)	NA	Q9LE73	Nudix hydrolase 4	AT1G18300.1	nudix hydrolase homolog 4 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr6g080940.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.42789.1.S1_at	A	A1TS	POPTR_0012s09400	POPTR_0012s09400 (11)	scaffold_12:10443098-10444004(+) (11)	NA	Q9STM4	Zinc finger CCCH domain-containing protein 43	AT3G48440.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g109990.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.428.1.A1_at	A	A1TS	POPTR_0006s06170	POPTR_0006s06170 (11)	scaffold_6:4384043-4384537(-) (11)	NA	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	LOC_Os11g14544.6	expressed protein	Medtr3g076350.1	"ankyrin repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4286.12.S1_at	A	A1TA	POPTR_0018s12120	POPTR_0018s12120 (9)	scaffold_18:12702159-12702618(+) (11)	NA	NA	NA	AT3G18760.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os01g12090.1	"ribosomal protein S6 family protein, putative"	Medtr5g038160.1	Leucine-rich repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4286.5.A1_a_at	A	A1TS	POPTR_0005s00400	POPTR_0005s00400 (11)	scaffold_5:125547-130950(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4286.7.S1_a_at	A	A1TS	POPTR_0018s12120	POPTR_0018s12120 (11)	scaffold_18:12702148-12702430(-) (11)	NA	NA	NA	AT3G18760.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os01g12090.1	"ribosomal protein S6 family protein, putative"	Medtr5g038160.1	Leucine-rich repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42878.1.A1_at	A	A1TS	POPTR_0005s20890	POPTR_0005s20890 (9)	scaffold_5:20022093-20022479(+) (9)	NA	Q9SDQ3	Scarecrow-like protein 1	AT1G21450.1	SCARECROW-like 1 	LOC_Os01g65900.1	"chitin-inducible gibberellin-responsive protein, putative, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42898.1.S1_at	A	A1MS	POPTR_0008s19970	POPTR_0008s19970 (11)	scaffold_8:13795296-13795547(-) (11)	NA	Q8VY21	Tubby-like F-box protein 3	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42898.2.S1_s_at	A	A1TS	POPTR_0008s19970	POPTR_0008s19970 (11)	scaffold_8:13795535-13795574(-) (11)	NA	Q8VY21	Tubby-like F-box protein 3	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4290.2.A1_at	A	A1TS	POPTR_0008s04040	POPTR_0008s04040 (11)	scaffold_8:2229082-2229741(-) (11)	NA	P57720	"Chorismate synthase, chloroplastic"	AT1G48850.1	"chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative "	LOC_Os03g14990.1	"chorismate synthase 2, chloroplast precursor, putative, expressed"	Medtr1g121140.1	Chorismate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004107|chorismate synthase activity	NA
PtpAffx.42961.1.S1_s_at	A	A1TS	POPTR_0004s24130	POPTR_0004s24130 (11)	scaffold_4:22859270-22859822(-) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT4G25160.1	U-box domain-containing protein kinase family protein 	LOC_Os06g04880.1	"serine threonine kinase, putative, expressed"	Medtr3g009640.1	Protein kinase; U box 	GO:0006950|response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.42983.1.S1_at	A	A1TS	POPTR_0001s08370	POPTR_0001s08370 (10)	scaffold_1:6380782-6381870(-) (10)	NA	Q0DA50	Zinc finger CCCH domain-containing protein 45	AT4G11970.2	YTH family protein 	LOC_Os06g46400.1	"ATCPSF30/CPSF30, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43020.1.A1_at	A	A1TS	POPTR_0007s12020	POPTR_0007s12020 (11)	scaffold_7:12360141-12360671(+) (11)	NA	NA	NA	AT4G37210.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g03070.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr5g018620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43020.2.A1_at	A	A1TS	POPTR_0005s13910	POPTR_0005s13910 (11)	scaffold_5:10895004-10895163(-) (11)	NA	Q9USQ4	NASP-related protein sim3	AT4G37210.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g03070.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr5g018620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43020.2.A1_s_at	A	A1TS	POPTR_0005s13910	POPTR_0005s13910 (11)	scaffold_5:10894931-10895500(-) (11)	NA	Q9USQ4	NASP-related protein sim3	AT4G37210.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g03070.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr5g018620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43049.1.S1_at	A	A1TS	POPTR_0003s10410	POPTR_0003s10410 (11)	scaffold_3:11403528-11406850(+) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT1G31420.2	Leucine-rich repeat protein kinase family protein 	LOC_Os03g16010.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g026640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.43050.1.S1_at	A	A1MS	POPTR_0015s05240	POPTR_0015s05240 (9)	scaffold_15:5609363-5610336(-) (11)	NA	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0004371|glycerone kinase activity	NA
PtpAffx.43105.1.A1_a_at	A	A1TS	POPTR_0007s12520	POPTR_0007s12520 (11)	scaffold_7:12811736-12811817(-) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os03g10140.1	"ZOS3-04 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.4311.1.A1_at	A	A1TA	POPTR_0001s08350	POPTR_0001s08350 (11)	scaffold_1:6369590-6370037(-) (11)	POPTR_0003s11850 (6)	NA	NA	AT3G58630.1	sequence-specific DNA binding transcription factors 	LOC_Os05g48690.2	"transcription factor like protein, putative, expressed"	Medtr4g109750.1	"6b-interacting protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43118.4.A1_at	A	A1TS	POPTR_0019s12720	POPTR_0019s12720 (11)	scaffold_19:13689838-13689997(+) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.43119.1.S1_at	A	A1TS	POPTR_0001s02660	POPTR_0001s02660 (10)	scaffold_1:2104509-2104598(-) (10)	NA	O00167	Eyes absent homolog 2	AT2G35320.1	EYES ABSENT homolog 	LOC_Os06g02028.1	"eyes absent homolog 4, putative, expressed"	Medtr8g102790.1	EYA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43119.2.S1_at	A	A1MS	POPTR_0001s02660	POPTR_0001s02660 (11)	scaffold_1:2104727-2105228(-) (11)	NA	O00167	Eyes absent homolog 2	AT2G35320.1	EYES ABSENT homolog 	LOC_Os06g02028.1	"eyes absent homolog 4, putative, expressed"	Medtr8g102790.1	EYA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43127.1.S1_at	A	A1TS	POPTR_0001s37980	POPTR_0001s37980 (9)	scaffold_1:37037031-37037581(-) (9)	NA	NA	NA	AT3G07660.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os09g08670.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g103900.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43127.2.A1_at	A	A1TS	POPTR_0011s02730	POPTR_0011s02730 (9)	scaffold_11:2675251-2675766(-) (9)	NA	NA	NA	AT3G07660.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os09g08670.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g103900.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43184.1.S1_a_at	A	A1TS	POPTR_0005s19710	POPTR_0005s19710 (9)	scaffold_5:18675697-18675971(-) (9)	NA	P37116	NADPH--cytochrome P450 reductase	AT4G24520.1	P450 reductase 1 	LOC_Os09g38620.1	"NADPH reductase, putative, expressed"	Medtr3g149560.1	"Flavodoxin/nitric oxide synthase; Sulphite reductase [NADPH] flavoprotein, alpha chain "	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.43184.1.S1_at	A	A1TS	POPTR_0005s19710	POPTR_0005s19710 (10)	scaffold_5:18675471-18676068(-) (10)	NA	P37116	NADPH--cytochrome P450 reductase	AT4G24520.1	P450 reductase 1 	LOC_Os09g38620.1	"NADPH reductase, putative, expressed"	Medtr3g149560.1	"Flavodoxin/nitric oxide synthase; Sulphite reductase [NADPH] flavoprotein, alpha chain "	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.43184.3.A1_a_at	A	A1TS	POPTR_0005s19710	POPTR_0005s19710 (11)	scaffold_5:18680290-18682933(-) (11)	NA	P37116	NADPH--cytochrome P450 reductase	AT4G24520.1	P450 reductase 1 	LOC_Os09g38620.1	"NADPH reductase, putative, expressed"	Medtr3g149560.1	"Flavodoxin/nitric oxide synthase; Sulphite reductase [NADPH] flavoprotein, alpha chain "	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.43198.1.S1_s_at	A	A1TS	POPTR_0016s07650	POPTR_0016s07650 (11)	scaffold_16:5486604-5487236(-) (11)	NA	O82039	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	AT3G11540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44510.1	"UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.432.2.S1_at	A	A1TS	POPTR_0003s14790	POPTR_0003s14790 (11)	scaffold_3:14770989-14771348(+) (11)	NA	NA	NA	AT1G31335.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g105990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43204.1.A1_at	A	A1TS	POPTR_0005s23960	POPTR_0005s23960 (11)	scaffold_5:22640917-22641973(+) (11)	NA	Q9SX99	"Protein OSB1, mitochondrial"	AT1G47720.1	Primosome PriB/single-strand DNA-binding 	LOC_Os03g43420.1	"single-stranded DNA-binding protein, putative, expressed"	Medtr1g083420.1	Single-strand binding protein 	NA	GO:0003697|single-stranded DNA binding	NA
PtpAffx.43219.1.S1_at	A	A1TS	POPTR_0001s02570	POPTR_0001s02570 (9)	scaffold_1:2049491-2050029(-) (9)	NA	NA	NA	AT2G35260.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17840.1); Has 42 Blast hits to 42 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g01014.1	expressed protein	Medtr5g014610.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.43226.1.A1_at	A	A1TS	POPTR_0006s03190	POPTR_0006s03190 (10)	scaffold_6:2007285-2007360(-) (10)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.43226.1.A1_s_at	A	A1TS	POPTR_0006s03190	POPTR_0006s03190 (11)	scaffold_6:2007491-2007839(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.43231.1.A1_a_at	A	A3TS	POPTR_0011s11430	POPTR_0011s11430 (11)//POPTR_0011s11450 (11)//POPTR_0256s00200 (11)	scaffold_11:14199180-14199257(-) (11)//scaffold_11:14215923-14216000(-) (11)//scaffold_256:1456-1533(+) (11)	NA	P49332	Probable glutathione S-transferase parC	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43231.1.A1_at	A	A1TS	POPTR_0256s00200	POPTR_0256s00200 (10)	scaffold_256:1777-2019(+) (10)	NA	P49332	Probable glutathione S-transferase parC	AT1G17180.1	glutathione S-transferase TAU 25 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43231.1.A1_x_at	A	A1TS	POPTR_0256s00200	POPTR_0256s00200 (11)	scaffold_256:1456-2019(+) (11)	POPTR_0011s11430 (7)	P49332	Probable glutathione S-transferase parC	AT1G17180.1	glutathione S-transferase TAU 25 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43233.1.A1_at	A	A1TS	POPTR_0014s07860	POPTR_0014s07860 (10)	scaffold_14:5852351-5853641(+) (10)	NA	Q9M2D2	"UPF0187 protein At3g61320, chloroplastic"	AT3G61320.1	Bestrophin-like protein 	LOC_Os03g01570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43248.1.S1_at	A	A1MS	POPTR_0005s09750	POPTR_0005s09750 (11)	scaffold_5:6841251-6841621(+) (11)	NA	NA	NA	AT3G19800.1	Protein of unknown function (DUF177) 	LOC_Os04g44340.1	expressed protein	Medtr4g101400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43248.2.A1_at	A	A1TS	POPTR_0005s09750	POPTR_0005s09750 (11)	scaffold_5:6842245-6842493(+) (11)	NA	NA	NA	AT3G19800.1	Protein of unknown function (DUF177) 	LOC_Os04g44340.1	expressed protein	Medtr4g101400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4325.1.S1_at	A	A1TS	POPTR_0011s12400	POPTR_0011s12400 (11)	scaffold_11:15124080-15124566(+) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.43257.1.S1_s_at	A	A1TS	POPTR_0010s07960	POPTR_0010s07960 (11)	scaffold_10:8910467-8911756(-) (11)	NA	Q9ZS51	Peroxisomal membrane protein PMP22	AT4G14305.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os08g45210.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr1g090150.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.43263.1.A1_at	A	A1TS	POPTR_0001s04060	POPTR_0001s04060 (11)	scaffold_1:3211578-3214061(-) (11)	NA	NA	NA	AT4G09830.1	Uncharacterised conserved protein UCP009193 	LOC_Os09g19640.1	"holocarboxylase synthetase, putative, expressed"	Medtr1g124740.1	"holocarboxylase synthetase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4328.1.S1_a_at	A	A1TS	POPTR_0005s00740	POPTR_0005s00740 (11)	scaffold_5:331306-331764(-) (11)	NA	O73944	Pyrrolidone-carboxylate peptidase	AT1G56700.2	"Peptidase C15, pyroglutamyl peptidase I-like "	LOC_Os07g44610.2	"pyrrolidone-carboxylate peptidase, putative, expressed"	Medtr1g102840.1	"Peptidase C15, pyroglutamyl peptidase I "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4328.2.S1_at	A	A1MS	POPTR_0005s00740	POPTR_0005s00740 (11)	scaffold_5:332238-332739(-) (11)	NA	O73944	Pyrrolidone-carboxylate peptidase	AT1G56700.2	"Peptidase C15, pyroglutamyl peptidase I-like "	LOC_Os07g44610.2	"pyrrolidone-carboxylate peptidase, putative, expressed"	Medtr1g102840.1	"Peptidase C15, pyroglutamyl peptidase I "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43288.1.A1_at	A	A1TS	POPTR_0004s05380	POPTR_0004s05380 (11)	scaffold_4:4126270-4126770(-) (11)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g49830.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.43296.1.A1_at	A	A1TS	POPTR_0014s15720	POPTR_0014s15720 (11)	scaffold_14:11757434-11758009(-) (11)	NA	Q9ZVN4	Probable tyrosine-protein phosphatase At1g05000	AT1G05000.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os09g05020.2	"tyrosine phosphatase family protein, putative, expressed"	Medtr5g092680.1	Tyrosine specific protein phosphatase and dual specificity protein phosphatase; Putative tyrosine phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.433.1.S1_at	A	A1TS	POPTR_0008s09920	POPTR_0008s09920 (10)	scaffold_8:6148546-6149100(-) (10)	NA	NA	NA	AT3G17350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50290.1); Has 203 Blast hits to 203 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g33860.1	conserved hypothetical protein	Medtr8g134330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.433.2.S1_at	A	A1TS	POPTR_0010s16270	POPTR_0010s16270 (11)	scaffold_10:15246452-15247023(+) (11)	NA	NA	NA	AT3G17350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50290.1); Has 203 Blast hits to 203 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g33860.1	conserved hypothetical protein	Medtr8g134330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43305.2.A1_a_at	A	A1TS	POPTR_0011s13630	POPTR_0011s13630 (11)	scaffold_11:16342705-16342905(+) (11)	NA	NA	NA	AT1G51100.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g48500.1	expressed protein	Medtr2g096980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43315.1.S1_at	A	A1MS	POPTR_0006s19250	POPTR_0006s19250 (10)	scaffold_6:18250244-18252474(+) (11)	NA	Q1LUI2	HD domain-containing protein 2	AT2G23820.2	Metal-dependent phosphohydrolase 	LOC_Os02g08260.1	"HD domain containing protein 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43322.5.A1_s_at	A	A4TS	POPTR_0019s10250	POPTR_0019s10270 (11)//POPTR_0019s10250 (11)//POPTR_1544s00200 (11)//POPTR_0019s10230 (10)	scaffold_1544:3333-3693(+) (11)//scaffold_19:11801767-11802127(-) (10)//scaffold_19:11814978-11815338(-) (11)//scaffold_19:11841120-11841480(-) (11)	NA	P29136	Metalloendoproteinase 1	AT1G24140.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr6g009200.1	Peptidoglycan binding-like 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.43358.1.A1_s_at	A	A1TS	POPTR_0013s11630	POPTR_0013s11630 (11)	scaffold_13:12288051-12288549(+) (11)	NA	Q84TH5	ABC transporter G family member 25	AT1G71960.1	ATP-binding casette family G25 	LOC_Os11g07600.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.4337.1.A1_a_at	A	A1TS	POPTR_0004s04070	POPTR_0004s04070 (11)	scaffold_4:2919691-2919726(-) (11)	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233659_18.1	"Stem-specific protein TSJT1, related AC233659.1 80671-78758 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4337.1.A1_s_at	A	A1TS	POPTR_0004s04070	POPTR_0004s04070 (11)	scaffold_4:2919428-2919797(-) (11)	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233659_18.1	"Stem-specific protein TSJT1, related AC233659.1 80671-78758 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4337.2.S1_at	A	A1TS	POPTR_0011s04960	POPTR_0011s04960 (11)	scaffold_11:4915394-4915438(-) (11)	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233659_18.1	"Stem-specific protein TSJT1, related AC233659.1 80671-78758 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4337.3.S1_at	A	A1TS	POPTR_0007s11020	POPTR_0007s11020 (11)	scaffold_7:11283951-11284782(+) (11)	NA	NA	NA	AT4G33985.1	Protein of unknown function (DUF1685) 	LOC_Os02g52770.1	expressed protein	Medtr5g017390.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4337.4.A1_at	A	A1MS	POPTR_0004s04070	POPTR_0004s04070 (9)	scaffold_4:2920013-2920127(-) (9)	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233659_18.1	"Stem-specific protein TSJT1, related AC233659.1 80671-78758 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43372.1.A1_at	A	A2TS	POPTR_0016s05860	POPTR_0149s00200 (11)//POPTR_0016s05860 (11)	scaffold_149:1321-1701(+) (11)//scaffold_16:3803746-3804126(+) (11)	NA	Q42578	Peroxidase 53	AT5G06720.1	peroxidase 2 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	Medtr7g112100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.43377.1.A1_s_at	A	A1TS	POPTR_0014s07040	POPTR_0014s07040 (11)	scaffold_14:5319089-5319127(-) (11)	NA	Q8VYD9	"CRS2-associated factor 1, mitochondrial"	AT4G31010.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os08g07790.1	"CRS2-associated factor 2, mitochondrial precursor, putative, expressed"	Medtr7g083490.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.43398.1.A1_at	A	A1TS	POPTR_0002s14060	POPTR_0002s14060 (11)	scaffold_2:10412566-10412963(-) (11)	NA	Q3E6Y3	Uncharacterized protein At1g28695	AT1G28710.3	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os03g52160.1	"regulatory protein, putative, expressed"	AC202489_5.1	"Uncharacterized protein At4g15970, related AC202489.10 31319-31924 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4340.1.S1_at	A	A1TS	POPTR_0001s43000	POPTR_0001s43000 (11)	scaffold_1:43054813-43055490(+) (11)	NA	Q9D752	Mitotic spindle assembly checkpoint protein MAD2B	AT1G16590.1	DNA-binding HORMA family protein 	NA	NA	Medtr2g088510.1	DNA-binding HORMA 	GO:0007067|mitosis	NA	NA
PtpAffx.43400.1.A1_at	A	A1TS	POPTR_0013s01360	POPTR_0013s01360 (11)	scaffold_13:755651-756016(-) (11)	NA	Q84JM4	Topless-related protein 3	AT5G27030.1	TOPLESS-related 3 	LOC_Os01g15020.1	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr1g100210.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43400.2.A1_at	A	A1TS	POPTR_0005s02160	POPTR_0005s02160 (10)	scaffold_5:1413137-1413519(-) (10)	NA	Q84JM4	Topless-related protein 3	AT5G27030.1	TOPLESS-related 3 	LOC_Os01g15020.1	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr1g100210.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43425.1.A1_at	A	A1TS	POPTR_0017s04790	POPTR_0017s04790 (11)	scaffold_17:3697285-3697607(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT1G28440.1	HAESA-like 1 	LOC_Os01g13800.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr2g018130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.43429.1.A1_s_at	A	A1TS	POPTR_0010s11260	POPTR_0010s11260 (11)	scaffold_10:11562018-11562139(-) (11)	NA	NA	NA	AT1G14710.2	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g13560.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43439.1.A1_at	A	A1TS	POPTR_0016s09130	POPTR_0016s09130 (11)	scaffold_16:7083237-7086238(-) (11)	NA	Q9SKN3	UPF0497 membrane protein At2g28370	AT2G28370.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g10870.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g018930.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.43444.1.A1_at	A	A1TS	POPTR_0014s14870	POPTR_0014s14870 (11)	scaffold_14:10915686-10916165(-) (11)	NA	NA	NA	AT1G05790.2	lipase class 3 family protein 	LOC_Os04g41200.1	"lipase, putative, expressed"	Medtr1g147130.2	"Lipase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43463.1.A1_at	A	A1TS	POPTR_0005s00470	POPTR_0005s00470 (10)	scaffold_5:164259-165963(+) (10)	NA	NA	NA	AT1G57540.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g14790.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43479.1.A1_at	A	A1MS	POPTR_0025s00610	POPTR_0025s00610 (10)	scaffold_25:300840-301341(+) (10)	NA	Q9LEW0	Ubiquitin carboxyl-terminal hydrolase 22	AT5G10790.1	ubiquitin-specific protease 22 	LOC_Os04g55360.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g121930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.43484.1.A1_at	A	A1TS	POPTR_0005s24120	POPTR_0005s24120 (11)	scaffold_5:22755301-22755410(-) (11)	NA	P31674	40S ribosomal protein S15	AT5G09500.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.43487.1.A1_a_at	A	A1TS	POPTR_0004s14770	POPTR_0004s14770 (11)	scaffold_4:15413688-15413973(-) (11)	NA	NA	NA	AT2G15560.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os08g13390.2	expressed protein	Medtr4g130000.1	Protein of unknown function DUF537 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43487.1.A1_at	A	A1TS	POPTR_0004s14770	POPTR_0004s14770 (10)	scaffold_4:15413743-15414197(-) (10)	NA	NA	NA	AT2G15560.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os08g13390.2	expressed protein	Medtr4g130000.1	Protein of unknown function DUF537 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43487.2.A1_a_at	A	A1TS	POPTR_0004s14770	POPTR_0004s14770 (11)	scaffold_4:15413686-15413842(-) (11)	NA	NA	NA	AT2G15560.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os08g13390.2	expressed protein	Medtr4g130000.1	Protein of unknown function DUF537 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4350.1.A1_s_at	A	A1TS	POPTR_0011s03390	POPTR_0011s03390 (11)	scaffold_11:3517896-3518063(+) (11)	NA	Q41932	"Oxygen-evolving enhancer protein 3-2, chloroplastic"	AT4G05180.1	photosystem II subunit Q-2 	LOC_Os07g36080.1	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.43500.1.A1_at	A	A1TS	POPTR_0019s15190	POPTR_0019s15190 (11)	scaffold_19:15759739-15760273(-) (11)	NA	O04682	Pathogenesis-related genes transcriptional activator PTI6	AT4G27950.1	cytokinin response factor 4 	LOC_Os01g46870.1	"AP2 domain containing protein, expressed"	Medtr5g083380.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.43521.1.A1_at	A	A1TS	POPTR_0007s14190	POPTR_0007s14190 (9)	scaffold_7:14038941-14039728(-) (9)	NA	NA	NA	AT5G65540.1	unknown protein; Has 6825 Blast hits to 3811 proteins in 289 species: Archae - 0; Bacteria - 184; Metazoa - 2139; Fungi - 760; Plants - 816; Viruses - 52; Other Eukaryotes - 2874 (source: NCBI BLink). 	LOC_Os03g58780.1	expressed protein	Medtr5g033120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43521.2.S1_at	A	A1MA	POPTR_0007s14190	POPTR_0007s14190 (11)	scaffold_7:14038910-14039253(+) (11)	NA	NA	NA	AT5G65540.1	unknown protein; Has 6825 Blast hits to 3811 proteins in 289 species: Archae - 0; Bacteria - 184; Metazoa - 2139; Fungi - 760; Plants - 816; Viruses - 52; Other Eukaryotes - 2874 (source: NCBI BLink). 	LOC_Os03g58780.1	expressed protein	Medtr5g033120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43524.1.S1_s_at	A	A1TS	POPTR_0005s12860	POPTR_0005s12860 (11)	scaffold_5:9668030-9668387(+) (11)	NA	Q94ID7	"Geranylgeranyl pyrophosphate synthase, chloroplastic"	AT4G36810.1	geranylgeranyl pyrophosphate synthase 1 	LOC_Os07g39270.2	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.43525.1.S1_at	A	A1TS	POPTR_0014s00320	POPTR_0014s00320 (11)	scaffold_14:132217-133293(+) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13060.2	evolutionarily conserved C-terminal region 5 	LOC_Os08g44200.1	"ECT5, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43546.1.A1_at	A	A1TS	POPTR_0010s07940	POPTR_0010s07940 (9)	scaffold_10:8895286-8896235(-) (11)	NA	Q8BGB2	Tetratricopeptide repeat protein 7A	AT4G28600.1	no pollen germination related 2 	LOC_Os10g33290.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g090090.2	"NPGR2 ; calmodulin binding ta, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43550.1.A1_at	A	A1TS	POPTR_0002s14320	POPTR_0002s14320 (11)	scaffold_2:10593502-10593818(+) (11)	NA	Q8GXL3	Squamosa promoter-binding-like protein 8	AT1G02065.1	squamosa promoter binding protein-like 8 	LOC_Os06g44860.1	"OsSPL10 - SBP-box gene family member, expressed"	Medtr8g005760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.43563.1.A1_at	A	A1TS	POPTR_0008s19830	POPTR_0008s19830 (11)	scaffold_8:13680886-13681630(-) (11)	NA	Q944S1	DEAD-box ATP-dependent RNA helicase 22	AT1G59990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os09g21520.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g074020.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.43563.1.A1_s_at	A	A1TS	POPTR_0008s19830	POPTR_0008s19830 (11)	scaffold_8:13681638-13683033(-) (11)	NA	Q944S1	DEAD-box ATP-dependent RNA helicase 22	AT1G59990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os09g21520.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g074020.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.43572.1.A1_at	A	A1TS	POPTR_0002s02370	POPTR_0002s02370 (11)	scaffold_2:1344687-1345172(+) (11)	NA	NA	NA	AT5G42146.1	unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43573.1.A1_s_at	A	A1TS	POPTR_0008s15880	POPTR_0008s15880 (11)	scaffold_8:10602420-10602618(+) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
PtpAffx.43573.2.A1_at	A	A1MS	POPTR_0008s15880	POPTR_0008s15880 (11)	scaffold_8:10602107-10602307(+) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
PtpAffx.43581.1.S1_at	A	A1TS	POPTR_0001s24210	POPTR_0001s24210 (11)	scaffold_1:23559059-23561586(-) (11)	NA	Q2KIP8	3-hydroxyacyl-CoA dehydratase 2	AT5G59770.1	"Protein-tyrosine phosphatase-like, PTPLA "	LOC_Os05g38590.2	expressed protein	Medtr4g080360.1	"Protein tyrosine phosphatase-like protein, PTPLA "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43586.1.A1_at	A	A1TA	POPTR_0025s00320	POPTR_0025s00320 (10)	scaffold_25:105240-105770(-) (10)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166710.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.43592.1.S1_at	A	A1TS	POPTR_0005s12280	POPTR_0005s12280 (11)	scaffold_5:9072508-9072995(-) (11)	NA	Q54JC2	Uncharacterized protein DDB_G0288155	AT1G19580.1	gamma carbonic anhydrase 1 	LOC_Os12g07220.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
PtpAffx.43601.1.A1_at	A	A1TS	POPTR_0018s09585	POPTR_0018s09585 (11)	scaffold_18:10527508-10527826(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43608.1.A1_at	A	A1TS	POPTR_0001s30240	POPTR_0001s30240 (11)	scaffold_1:28757251-28757723(+) (11)	NA	Q9SQK3	"Ankyrin repeat domain-containing protein EMB506, chloroplastic"	AT5G40160.1	Ankyrin repeat family protein 	LOC_Os06g13000.1	"ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed"	Medtr2g055950.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43617.1.A1_at	A	A1MS	POPTR_0012s05850	POPTR_0012s05850 (10)	scaffold_12:5691954-5692162(+) (11)	NA	NA	NA	AT5G07980.1	dentin sialophosphoprotein-related 	LOC_Os03g11460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43623.2.A1_a_at	A	A1TS	POPTR_0013s06530	POPTR_0013s06530 (11)	scaffold_13:5134453-5135085(+) (11)	NA	Q54YW1	ELMO domain-containing protein A	AT3G03610.1	ELMO/CED-12 family protein 	LOC_Os03g20670.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g104420.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
PtpAffx.43626.1.A1_at	A	A1TS	POPTR_0002s07220	POPTR_0002s07220 (11)	scaffold_2:4926164-4926582(-) (11)	NA	Q6GQE1	Transmembrane protein 184C	AT1G77220.1	Protein of unknown function (DUF300) 	LOC_Os05g44080.1	"transmembrane protein, putative, expressed"	Medtr3g164030.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43627.1.S1_a_at	A	A1MS	POPTR_0001s03920	POPTR_0001s03920 (9)	scaffold_1:3135157-3135256(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43627.1.S1_at	A	A1MS	POPTR_0001s03920	POPTR_0001s03920 (11)	scaffold_1:3134928-3135112(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43630.1.A1_at	A	A1TS	POPTR_0016s05540	POPTR_0016s05540 (9)	scaffold_16:3476945-3477490(+) (11)	NA	Q6ZQ18	Protein EFR3 homolog B	AT2G41830.1	Uncharacterized protein 	LOC_Os02g05040.1	"cyclin-related protein, putative, expressed"	Medtr4g050000.1	"cyclin-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43636.1.A1_at	A	A1TS	POPTR_0007s06150	POPTR_0007s06150 (11)	scaffold_7:4293113-4293583(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g140590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4365.1.A1_a_at	A	A1TS	POPTR_0014s17360	POPTR_0014s17360 (11)	scaffold_14:13511573-13511746(+) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07380.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4365.1.A1_x_at	A	A1TS	POPTR_0014s17360	POPTR_0014s17360 (11)	scaffold_14:13510965-13511746(+) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07380.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4365.2.A1_at	A	A1TS	POPTR_0014s08210	POPTR_0014s08210 (11)	scaffold_14:6095717-6095943(+) (11)	NA	P32260	"Cysteine synthase, chloroplastic/chromoplastic"	AT3G61440.1	cysteine synthase C1 	LOC_Os04g08350.2	"cysteine synthase, chloroplast/chromoplast precursor, putative, expressed"	Medtr7g087780.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.4365.2.A1_s_at	A	A1TS	POPTR_0014s08210	POPTR_0014s08210 (11)	scaffold_14:6094880-6095777(+) (11)	NA	P32260	"Cysteine synthase, chloroplastic/chromoplastic"	AT3G61440.1	cysteine synthase C1 	LOC_Os04g08350.2	"cysteine synthase, chloroplast/chromoplast precursor, putative, expressed"	Medtr7g087780.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.4365.4.A1_at	A	A1TS	POPTR_0002s16220	POPTR_0002s16220 (11)	scaffold_2:12127368-12127685(+) (11)	NA	P31300	"Cysteine synthase, chloroplastic/chromoplastic"	AT3G61440.1	cysteine synthase C1 	LOC_Os04g08350.2	"cysteine synthase, chloroplast/chromoplast precursor, putative, expressed"	Medtr7g087780.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.4365.6.S1_a_at	A	A1TS	POPTR_0014s17360	POPTR_0014s17360 (11)	scaffold_14:13507091-13509740(+) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07380.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43654.1.S1_at	A	A1TS	POPTR_0018s09130	POPTR_0018s09130 (11)	scaffold_18:10025592-10026069(-) (11)	NA	Q54ZG7	UPF0546 membrane protein	AT5G19570.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0546 (InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g09600.3	"GA11916-PA, putative, expressed"	Medtr4g159410.1	"UPF0546 membrane protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43659.1.A1_at	A	A1MS	POPTR_0015s14330	POPTR_0015s14330 (11)	scaffold_15:13984533-13984848(+) (11)	NA	NA	NA	AT4G25360.2	TRICHOME BIREFRINGENCE-LIKE 18 	LOC_Os01g68630.1	"leaf senescence related protein, putative, expressed"	Medtr6g067370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43661.1.A1_at	A	A1TS	POPTR_0015s01280	POPTR_0015s01280 (11)	scaffold_15:809185-809699(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43661.2.S1_a_at	A	A1TS	POPTR_0015s01280	POPTR_0015s01280 (11)	scaffold_15:808809-809455(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43667.1.A1_at	A	A1TS	POPTR_0003s17300	POPTR_0003s17300 (11)	scaffold_3:16692378-16692801(-) (11)	NA	B3Q1Q5	Hydroxyethylthiazole kinase	AT3G24030.1	hydroxyethylthiazole kinase family protein 	NA	NA	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	GO:0004417|hydroxyethylthiazole kinase activity	NA
PtpAffx.43670.1.A1_at	A	A1TS	POPTR_0001s07970	POPTR_0001s07970 (9)	scaffold_1:6028655-6029110(-) (9)	NA	Q8R035	"Peptidyl-tRNA hydrolase ICT1, mitochondrial"	AT1G62850.3	Class I peptide chain release factor 	LOC_Os03g14510.2	"immature colon carcinoma transcript 1 protein precursor, putative, expressed"	Medtr8g106790.1	"Immature colon carcinoma transcript 1 protein precursor, related "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	GO:0003747|translation release factor activity	NA
PtpAffx.43686.1.A1_at	A	A1TS	POPTR_0004s09820	POPTR_0004s09820 (11)	scaffold_4:8346341-8347468(+) (11)	NA	Q3SZI0	Mannose-6-phosphate isomerase	AT1G67070.1	"Mannose-6-phosphate isomerase, type I "	LOC_Os01g03710.1	"mannose-6-phosphate isomerase, putative, expressed"	AC233656_29.1	"Mannose-6-phosphate isomerase, type I AC233656.1 117027-112130 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	GO:0004476|mannose-6-phosphate isomerase activity||GO:0008270|zinc ion binding	NA
PtpAffx.43687.2.S1_at	A	A1TS	POPTR_0001s00920	POPTR_0001s00920 (9)	scaffold_1:752573-752897(+) (9)	NA	Q06003	Protein goliath	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os05g32350.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g026380.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43698.1.A1_at	A	A1TS	POPTR_0005s15610	POPTR_0005s15610 (10)	scaffold_5:12229411-12230023(-) (10)	NA	NA	NA	AT1G74640.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g24710.2	"alpha/beta hydrolase fold, putative, expressed"	Medtr8g112320.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.437.1.S1_at	A	A1TS	POPTR_0001s18880	POPTR_0001s18880 (11)	scaffold_1:16041482-16042881(-) (11)	NA	Q6P6X9	Nucleoporin NUP53	AT3G16310.1	mitotic phosphoprotein N' end (MPPN) family protein 	LOC_Os01g10350.1	"MPPN domain containing protein, expressed"	Medtr2g122320.1	MPPN 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43739.1.A1_at	A	A1TS	POPTR_0009s12100	POPTR_0009s12100 (11)	scaffold_9:9925321-9925544(-) (11)	NA	O42832	AdoMet-dependent rRNA methyltransferase spb1	AT4G25730.1	FtsJ-like methyltransferase family protein 	LOC_Os05g49230.1	"ribosomal RNA large subunit methyltransferase J, putative, expressed"	Medtr4g095940.1	"Ribosomal RNA methyltransferase RrmJ/FtsJ; Spb1, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing||GO:0032259|methylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0008168|methyltransferase activity	GO:0005634|nucleus
PtpAffx.43742.1.S1_at	A	A1TS	POPTR_0003s06670	POPTR_0003s06670 (11)	scaffold_3:8198662-8199409(+) (11)	NA	Q9C9E3	Protein TIFY 11B	AT1G72450.1	jasmonate-zim-domain protein 6 	LOC_Os07g42370.2	"zinc-finger protein, putative, expressed"	Medtr2g049880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43752.1.A1_at	A	A1MS	POPTR_0005s17320	POPTR_0005s17320 (11)	scaffold_5:14633886-14634326(-) (11)	NA	NA	NA	AT1G78310.1	VQ motif-containing protein 	NA	NA	Medtr3g150400.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43760.1.A1_at	A	A1TS	POPTR_0004s24160	POPTR_0004s24160 (11)	scaffold_4:22893351-22893742(-) (11)	NA	Q3E875	Uncharacterized Rho GTPase-activating protein At5g61530	AT5G61530.1	small G protein family protein / RhoGAP family protein 	LOC_Os07g30300.1	"small G protein family protein, putative, expressed"	NA	NA	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.43786.1.S1_at	A	A1TS	POPTR_0018s00720	POPTR_0018s00720 (11)	scaffold_18:634909-636031(-) (11)	NA	P33399	La protein homolog	AT4G32720.2	La protein 1 	LOC_Os02g39700.1	"RNA binding protein, putative, expressed"	Medtr2g024800.1	RNA-binding region RNP-1 (RNA recognition motif); Winged helix repressor DNA-binding 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.43788.1.A1_at	A	A1TS	POPTR_0002s20620	POPTR_0002s20620 (11)	scaffold_2:16700593-16704766(+) (11)	NA	NA	NA	AT3G62790.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os08g44250.1	"fiber protein Fb14, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43798.1.A1_a_at	A	A1MS	POPTR_0015s05570	POPTR_0015s05570 (11)	scaffold_15:5911532-5911722(-) (11)	NA	NA	NA	AT1G11220.1	Protein of unknown function (DUF761) 	LOC_Os07g37620.1	"fiber expressed protein, putative, expressed"	Medtr2g095300.1	"Protein of unknown function DUF761, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43799.1.A1_at	A	A1MS	POPTR_0007s09870	POPTR_0007s09870 (11)	scaffold_7:9395861-9396300(-) (11)	NA	Q9FJX6	Formin-like protein 6	AT5G67470.1	formin homolog 6 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr5g015760.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43823.1.S1_a_at	A	A1TS	POPTR_0013s12040	POPTR_0013s12040 (10)	scaffold_13:12714787-12715060(+) (11)	NA	NA	NA	AT1G71865.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g65094.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43824.1.S1_at	A	A1TS	POPTR_0002s09630	POPTR_0002s09630 (11)	scaffold_2:6899635-6900279(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os07g43050.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.43825.1.A1_s_at	A	A1TS	POPTR_0007s13560	POPTR_0007s13560 (11)	scaffold_7:13607230-13607518(-) (11)	NA	Q9H0R3	Transmembrane protein 222	AT3G51040.3	RTE1-homolog 	LOC_Os03g58520.1	"green ripe-like, putative, expressed"	Medtr5g021070.1	Protein of unknown function DUF778 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43827.1.A1_at	A	A1TS	POPTR_0006s11660	POPTR_0006s11660 (10)	scaffold_6:8886547-8888197(-) (10)	NA	NA	NA	AT2G36480.1	ENTH/VHS family protein 	LOC_Os09g39270.1	"ZOS9-20 - C2H2 zinc finger protein, expressed"	Medtr7g126610.1	"Regulation of nuclear pre-mRNA protein; Zinc finger, C2H2-type; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43829.1.A1_at	A	A1TS	POPTR_0018s11040	POPTR_0018s11040 (11)	scaffold_18:11856499-11857098(+) (11)	NA	O24575	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os04g42090.5	"CPuORF7 - conserved peptide uORF-containing transcript, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.43830.1.A1_at	A	A1TS	POPTR_0019s04730	POPTR_0019s04730 (9)	scaffold_19:4946138-4946353(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43832.1.A1_at	A	A1TS	POPTR_0011s05050	POPTR_0011s05050 (11)	scaffold_11:5001244-5002067(-) (11)	NA	NA	NA	AT2G20740.1	Tetraspanin family protein 	LOC_Os04g58330.1	expressed protein	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.43832.2.A1_at	A	A1TS	POPTR_0004s04160	POPTR_0004s04160 (10)	scaffold_4:2982918-2983703(-) (11)	NA	NA	NA	AT2G20740.1	Tetraspanin family protein 	LOC_Os04g58330.1	expressed protein	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.43839.1.S1_a_at	A	A2TS	POPTR_0013s09980	POPTR_0013s09980 (11)//POPTR_0019s10580 (11)	scaffold_13:9960734-9965678(+) (11)//scaffold_19:12132317-12133730(+) (11)	NA	Q38836	Agamous-like MADS-box protein AGL11	AT4G09960.1	K-box region and MADS-box transcription factor family protein  	LOC_Os01g10504.3	"OsMADS3 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.43839.1.S1_at	A	A1TS	POPTR_0019s10580	POPTR_0019s10580 (10)	scaffold_19:12128176-12133774(+) (10)	NA	Q38836	Agamous-like MADS-box protein AGL11	AT4G09960.1	K-box region and MADS-box transcription factor family protein  	LOC_Os01g10504.3	"OsMADS3 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.43839.2.S1_at	A	A1TS	POPTR_0013s09980	POPTR_0013s09980 (11)	scaffold_13:9965608-9966220(+) (11)	NA	Q38836	Agamous-like MADS-box protein AGL11	AT4G09960.1	K-box region and MADS-box transcription factor family protein  	LOC_Os01g10504.3	"OsMADS3 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.43846.1.A1_at	A	A1TS	POPTR_0018s00970	POPTR_0018s00970 (11)	scaffold_18:883926-885536(+) (11)	NA	P92960	Potassium channel KAT3	AT4G32650.3	potassium channel in Arabidopsis thaliana 3 	LOC_Os01g52070.1	"potassium channel AKT1, putative, expressed"	Medtr3g135850.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.4385.1.S1_s_at	A	A2TS	POPTR_0001s04510	POPTR_0003s21330 (11)//POPTR_0001s04510 (11)	scaffold_1:3542534-3543772(+) (11)//scaffold_3:19540117-19542153(+) (11)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.4385.2.S1_a_at	A	A1TS	POPTR_0001s04510	POPTR_0001s04510 (11)	scaffold_1:3541330-3541484(+) (11)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.43853.1.A1_s_at	A	A1TS	POPTR_0006s22380	POPTR_0006s22380 (11)	scaffold_6:21416797-21418365(+) (11)	NA	P54968	IAA-amino acid hydrolase ILR1	AT3G02875.1	Peptidase M20/M25/M40 family protein 	LOC_Os07g14590.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.43853.2.A1_s_at	A	A1TS	POPTR_0006s22390	POPTR_0006s22390 (11)	scaffold_6:21422538-21423092(+) (11)	NA	P54968	IAA-amino acid hydrolase ILR1	AT3G02875.1	Peptidase M20/M25/M40 family protein 	LOC_Os07g14590.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.43857.1.A1_at	A	A1MS	POPTR_0019s12330	POPTR_0019s12330 (10)	scaffold_19:13384388-13384893(-) (11)	NA	NA	NA	AT3G14250.1	RING/U-box superfamily protein 	LOC_Os08g35060.1	"protein binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43861.1.S1_at	A	A1TS	POPTR_0014s06850	POPTR_0014s06850 (10)	scaffold_14:5147643-5148000(-) (10)	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.2	WD-40 repeat family protein / beige-related 	LOC_Os02g44380.2	"WD domain containing protein, putative, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43868.1.S1_at	A	A1TS	POPTR_0005s14990	POPTR_0005s14990 (11)	scaffold_5:11832884-11833258(+) (11)	NA	Q9C9M6	Probable histone chaperone ASF1A	AT1G66740.1	ASF1 like histone chaperone 	LOC_Os05g48030.1	"anti-silencing protein, ASF1-like domain containing protein, expressed"	Medtr3g163730.1	"Anti-silencing protein, ASF1-like "	GO:0006333|chromatin assembly or disassembly	NA	GO:0005634|nucleus
PtpAffx.43868.2.A1_at	A	A1TS	POPTR_0004s09330	POPTR_0004s09330 (10)	scaffold_4:7886855-7887285(+) (10)	NA	Q9C9M6	Probable histone chaperone ASF1A	AT1G66740.1	ASF1 like histone chaperone 	LOC_Os05g48030.1	"anti-silencing protein, ASF1-like domain containing protein, expressed"	Medtr3g163730.1	"Anti-silencing protein, ASF1-like "	GO:0006333|chromatin assembly or disassembly	NA	GO:0005634|nucleus
PtpAffx.43869.2.A1_a_at	A	A1TS	POPTR_0017s11150	POPTR_0017s11150 (11)	scaffold_17:10803257-10805841(-) (11)	NA	Q10576	Prolyl 4-hydroxylase subunit alpha-1	AT3G28480.1	Oxoglutarate/iron-dependent oxygenase 	LOC_Os10g27340.2	"oxidoreductase, putative, expressed"	Medtr6g010100.1	Metridin-like ShK toxin; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.4387.1.A1_s_at	A	A1TS	POPTR_0003s18930	POPTR_0003s18930 (11)	scaffold_3:17826568-17826981(-) (11)	POPTR_0001s07310 (7)	Q7TQ20	DnaJ homolog subfamily C member 2	AT3G11450.1	DnaJ domain ;Myb-like DNA-binding domain 	LOC_Os04g30890.1	"MYB family transcription factor, putative, expressed"	Medtr7g132840.1	"Heat shock protein DnaJ, N-terminal; Homeodomain-related; "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.43873.2.A1_at	A	A1TS	POPTR_0001s29270	POPTR_0001s29270 (11)	scaffold_1:28010508-28011548(-) (11)	NA	NA	NA	AT5G64460.8	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g121830.1	"phosphoglycerate mutase-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43873.3.S1_at	A	A1TS	POPTR_0009s08380	POPTR_0009s08380 (11)	scaffold_9:7692971-7693056(-) (11)	NA	NA	NA	AT5G64460.8	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g121830.1	"phosphoglycerate mutase-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43875.1.A1_at	A	A1TS	POPTR_0012s14290	POPTR_0012s14290 (11)	scaffold_12:14235946-14236418(+) (11)	NA	O49663	Zinc finger A20 and AN1 domain-containing stress-associated protein 9	AT4G22820.2	A20/AN1-like zinc finger family protein 	LOC_Os03g57890.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g140780.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.43877.1.A1_at	A	A1TS	POPTR_0004s21330	POPTR_0004s21330 (11)	scaffold_4:20494261-20495768(-) (11)	NA	P73456	Cell division protein ftsZ	AT2G36250.2	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.43883.1.A1_at	A	A1TS	POPTR_0018s11260	POPTR_0018s11260 (10)	scaffold_18:12056608-12061186(-) (11)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr8g144940.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43886.1.A1_at	A	A1TS	POPTR_0002s05570	POPTR_0002s05570 (11)	scaffold_2:3645556-3645885(-) (11)	NA	P62315	Small nuclear ribonucleoprotein Sm D1	AT4G02840.1	Small nuclear ribonucleoprotein family protein 	LOC_Os04g39444.1	"LSM domain containing protein, expressed"	Medtr1g086500.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43888.1.A1_a_at	A	A1MS	POPTR_0010s23230	POPTR_0010s23230 (11)	scaffold_10:19854376-19854435(+) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G04250.2	Cysteine proteinases superfamily protein 	LOC_Os03g64219.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g120470.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43889.1.A1_at	A	A1TS	POPTR_0008s15050	POPTR_0008s15050 (9)	scaffold_8:10025855-10026127(-) (9)	NA	Q94AZ2	Sugar transport protein 13	AT5G26340.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.43901.1.A1_at	A	A1TS	POPTR_0001s32220	POPTR_0001s32220 (11)	scaffold_1:30622902-30623042(-) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT2G32800.1	protein kinase family protein 	LOC_Os11g25860.1	"protein Kinase, putative, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.43902.1.A1_a_at	A	A2TS	POPTR_0012s09180	POPTR_0012s09180 (11)//POPTR_0357s00220 (9)	scaffold_12:10243766-10244010(+) (11)//scaffold_357:19805-20049(+) (9)	POPTR_0012s09160 (8)	P24465	Cytochrome P450 71A1	AT3G26330.1	"cytochrome P450, family 71, subfamily B, polypeptide 37 "	LOC_Os12g16720.1	"cytochrome P450 71A1, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.43906.1.A1_at	A	A1TS	POPTR_0016s10790	POPTR_0016s10790 (11)	scaffold_16:9170477-9170946(+) (11)	NA	Q42430	Zinc finger protein 1	AT2G28200.1	C2H2-type zinc finger family protein 	LOC_Os04g08060.1	"ZOS4-03 - C2H2 zinc finger protein, expressed"	Medtr4g076150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.43916.1.A1_at	A	A1TS	POPTR_0008s07740	POPTR_0008s07740 (11)	scaffold_8:4751717-4753307(+) (11)	NA	A0JMK9	Chromatin assembly factor 1 subunit A	AT1G65470.1	chromatin assembly factor-1 (FASCIATA1) (FAS1) 	LOC_Os01g67100.1	expressed protein	Medtr7g090120.1	FAS1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43937.1.S1_s_at	A	A1TS	POPTR_0005s17260	POPTR_0005s17260 (11)	scaffold_5:14487160-14487434(+) (11)	NA	Q2KJ44	Serine/threonine-protein phosphatase 2A activator	AT4G08960.1	phosphotyrosyl phosphatase activator (PTPA) family protein 	LOC_Os06g11640.1	"serine/threonine-protein phosphatase 2A activator 2, putative, expressed"	Medtr4g069930.1	"Phosphotyrosyl phosphatase activator, PTPA "	NA	GO:0019211|phosphatase activator activity	NA
PtpAffx.43941.1.S1_s_at	A	A1TS	POPTR_0035s00210	POPTR_0035s00210 (10)	scaffold_35:72179-72212(-) (10)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	NA	NA	Medtr3g109810.1	Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43944.1.A1_at	A	A1TS	POPTR_0019s08670	POPTR_0019s08670 (11)	scaffold_19:10203624-10203712(-) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT3G56370.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g080410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.4395.1.A1_a_at	A	A1TS	POPTR_0017s04020	POPTR_0017s04020 (11)	scaffold_17:3026530-3026681(-) (11)	NA	Q7ZWE3	La-related protein 7	AT2G43970.1	RNA-binding protein 	LOC_Os12g12360.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr4g128970.1	"RNA-binding protein Lupus La; Ataxin-2, C-terminal; Winged helix repressor DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4395.2.A1_a_at	A	A1TS	POPTR_0017s04020	POPTR_0017s04020 (11)	scaffold_17:3020767-3020866(-) (11)	NA	Q7ZWE3	La-related protein 7	AT2G43970.1	RNA-binding protein 	LOC_Os12g12360.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr4g128970.1	"RNA-binding protein Lupus La; Ataxin-2, C-terminal; Winged helix repressor DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4395.3.A1_a_at	A	A1TS	POPTR_0017s04020	POPTR_0017s04020 (11)	scaffold_17:3020909-3021598(-) (11)	NA	Q7ZWE3	La-related protein 7	AT2G43970.1	RNA-binding protein 	LOC_Os12g12360.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr4g128970.1	"RNA-binding protein Lupus La; Ataxin-2, C-terminal; Winged helix repressor DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4395.4.A1_at	A	A1TS	POPTR_0017s04020	POPTR_0017s04020 (11)	scaffold_17:3025480-3026454(-) (11)	NA	Q7ZWE3	La-related protein 7	AT2G43970.1	RNA-binding protein 	LOC_Os12g12360.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr4g128970.1	"RNA-binding protein Lupus La; Ataxin-2, C-terminal; Winged helix repressor DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43950.1.A1_at	A	A1TS	POPTR_0018s02290	POPTR_0018s02290 (11)	scaffold_18:2045026-2045541(+) (11)	NA	NA	NA	AT5G11000.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr3g138030.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43958.1.A1_at	A	A1MS	POPTR_0010s11670	POPTR_0010s11670 (9)	scaffold_10:11867517-11867700(-) (10)	NA	P0C2G7	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	AT1G24880.1	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein 	LOC_Os03g12320.1	"UDP-3-O- N-acetylglucosamine deacetylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0009245|lipid A biosynthetic process	GO:0008759|UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity	NA
PtpAffx.4396.1.S1_at	A	A1TS	POPTR_0025s00400	POPTR_0025s00400 (11)	scaffold_25:154737-155151(-) (11)	NA	NA	NA	AT2G11890.1	adenylate cyclases 	LOC_Os08g20400.1	"adenylate cyclase family protein, expressed"	Medtr8g122220.1	Adenylate cyclase 	GO:0044281|small molecule metabolic process||GO:0006171|cAMP biosynthetic process	GO:0004016|adenylate cyclase activity	NA
PtpAffx.43993.1.S1_at	A	A1TS	POPTR_0001s34660	POPTR_0001s34660 (11)	scaffold_1:32933867-32934249(+) (11)	NA	Q9LHA7	Peroxidase 31	AT3G28200.1	Peroxidase superfamily protein 	LOC_Os02g50770.1	"peroxidase precursor, putative, expressed"	Medtr6g008740.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.44.1.S1_a_at	A	A2TS	POPTR_0001s12160	POPTR_0001s12160 (11)//POPTR_0014s17460 (11)	scaffold_1:9418593-9418628(+) (11)//scaffold_14:13653308-13653343(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44.2.S1_a_at	A	A1TS	POPTR_0014s17460	POPTR_0014s17460 (9)	scaffold_14:13653386-13653461(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44.2.S1_at	A	A1TS	POPTR_0014s17460	POPTR_0014s17460 (11)	scaffold_14:13653339-13655048(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44004.1.S1_at	A	A1TS	POPTR_0009s06420	POPTR_0009s06420 (10)	scaffold_9:6204709-6205178(+) (10)	NA	Q9BZE9	Tether containing UBX domain for GLUT4	AT3G27310.1	plant UBX domain-containing protein 1 	LOC_Os04g40870.1	"alveolar soft part sarcoma chromosome region, candidate 1, putative, expressed"	Medtr6g024990.1	UBX 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44007.1.A1_a_at	A	A1TS	POPTR_0008s19730	POPTR_0008s19730 (11)	scaffold_8:13606663-13607259(-) (11)	NA	Q9ZWS9	Two-component response regulator ARR3	AT1G59940.1	response regulator 3 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr5g037580.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.44007.2.A1_at	A	A1TS	POPTR_0010s04740	POPTR_0010s04740 (10)	scaffold_10:5878635-5879060(+) (10)	NA	Q9ZWS9	Two-component response regulator ARR3	AT1G59940.1	response regulator 3 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr5g037580.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.44007.3.S1_a_at	A	A1TS	POPTR_0008s19730	POPTR_0008s19730 (11)	scaffold_8:13607837-13607908(-) (11)	NA	Q9ZWS9	Two-component response regulator ARR3	AT1G59940.1	response regulator 3 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr5g037580.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.44010.1.A1_at	A	A1TS	POPTR_0010s08740	POPTR_0010s08740 (11)	scaffold_10:9601603-9601843(-) (11)	NA	P27806	Histone H1	AT2G30620.2	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.44010.2.A1_at	A	A1TS	POPTR_0008s16220	POPTR_0008s16220 (11)	scaffold_8:10852908-10853262(+) (11)	NA	P26569	Histone H1.2	AT2G30620.2	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	NA	NA	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.4403.1.S1_a_at	A	A2TS	POPTR_0001s03330	POPTR_0003s18310 (9)//POPTR_0001s03330 (9)	scaffold_1:2722698-2722791(+) (9)//scaffold_3:17442222-17442315(-) (9)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4403.1.S1_at	A	A1TS	POPTR_0003s18310	POPTR_0003s18310 (11)	scaffold_3:17441980-17442281(-) (11)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4403.2.S1_a_at	A	A2TS	POPTR_0001s03330	POPTR_0003s18310 (11)//POPTR_0001s03330 (11)	scaffold_1:2719849-2720179(+) (11)//scaffold_3:17445884-17446224(-) (11)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4403.2.S1_at	A	A1TS	POPTR_0001s03330	POPTR_0001s03330 (11)	scaffold_1:2719268-2719973(+) (11)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4403.3.S1_a_at	A	A1TS	POPTR_0001s03330	POPTR_0001s03330 (11)	scaffold_1:2723260-2723314(+) (11)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4403.4.A1_a_at	A	A1TS	POPTR_0001s03330	POPTR_0001s03330 (11)	scaffold_1:2722815-2723230(+) (11)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4403.5.A1_a_at	A	A1TS	POPTR_0001s03330	POPTR_0001s03330 (11)	scaffold_1:2722815-2723001(+) (11)	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44051.1.A1_at	A	A1MS	POPTR_0010s26160	POPTR_0010s26160 (11)	scaffold_10:21484586-21486968(-) (11)	NA	Q94C60	Transcription elongation factor SPT4 homolog 2	AT5G63670.1	SPT4 homolog 2 	LOC_Os07g43060.2	"transcription elongation factor SPT4 homolog 1, putative, expressed"	Medtr3g122710.1	Transcription initiation Spt4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045941|positive regulation of transcription	GO:0008270|zinc ion binding||GO:0008159|positive transcription elongation factor activity	GO:0005634|nucleus
PtpAffx.44055.1.S1_at	A	A1TS	POPTR_0006s20690	POPTR_0006s20690 (11)	scaffold_6:19688136-19688771(+) (11)	NA	NA	NA	AT2G42110.1	unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g03630.1	expressed protein	Medtr7g111930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4406.1.A1_at	A	A1MS	POPTR_0012s08110	POPTR_0012s08110 (11)	scaffold_12:9154929-9155388(+) (11)	NA	Q93YW0	"Protein EXECUTER 1, chloroplastic"	AT1G27510.1	Protein of unknown function (DUF3506) 	LOC_Os01g01790.1	expressed protein	Medtr3g113590.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44079.1.A1_at	A	A1TS	POPTR_0001s04250	POPTR_0001s04250 (10)	scaffold_1:3362724-3364705(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44091.1.A1_at	A	A1TS	POPTR_0010s11280	POPTR_0010s11280 (11)	scaffold_10:11583568-11584048(-) (11)	NA	Q38909	Probable xyloglucan endotransglucosylase/hydrolase protein 28	AT1G14720.1	xyloglucan endotransglucosylase/hydrolase 28 	LOC_Os03g13570.1	"glycosyl hydrolases family 16, putative, expressed"	CU633465_9.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal CU633465.7 82577-85450 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.44094.1.A1_at	A	A1TS	POPTR_0014s04210	POPTR_0014s04210 (11)	scaffold_14:3315172-3315636(-) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT1G75100.1	J-domain protein required for chloroplast accumulation response 1 	LOC_Os03g10180.1	expressed protein	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44096.1.A1_at	A	A1TS	POPTR_0006s10650	POPTR_0006s10650 (11)	scaffold_6:7973503-7973976(-) (11)	NA	Q5XPJ9	Protein SCAR2	AT2G38440.1	SCAR homolog 2 	LOC_Os03g60240.1	"SCAR-like protein 1, putative, expressed"	Medtr7g077030.1	Actin-binding WH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44109.1.A1_at	A	A1TS	POPTR_0010s13060	POPTR_0010s13060 (11)	scaffold_10:12953751-12954022(-) (11)	NA	NA	NA	AT2G01260.1	Protein of unknown function (DUF789) 	LOC_Os01g33000.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44113.1.S1_at	A	A1TS	POPTR_0019s00800	POPTR_0019s00800 (11)	scaffold_19:534988-535192(-) (11)	NA	A2Y3Q5	"Ferrochelatase-2, chloroplastic"	AT2G30390.1	ferrochelatase 2 	LOC_Os05g29760.2	"ferrochelatase-2, chloroplast precursor, putative, expressed"	Medtr4g144490.1	Ferrochelatase 	GO:0006783|heme biosynthetic process	GO:0004325|ferrochelatase activity	NA
PtpAffx.44115.2.A1_a_at	A	A1TS	POPTR_0002s05070	POPTR_0002s05070 (11)	scaffold_2:3285127-3285720(+) (11)	NA	Q9M1W4	Homocysteine S-methyltransferase 2	AT3G63250.1	homocysteine methyltransferase 2 	LOC_Os10g28630.1	"homocysteine S-methyltransferase protein, putative, expressed"	Medtr5g067080.1	Homocysteine S-methyltransferase 	NA	GO:0008898|homocysteine S-methyltransferase activity	NA
PtpAffx.44126.1.A1_at	A	A1TS	POPTR_0015s06340	POPTR_0015s06340 (11)	scaffold_15:7001727-7002101(-) (11)	NA	Q9LS46	Aluminum-activated malate transporter 9	AT3G18440.1	aluminum-activated malate transporter 9 	LOC_Os02g49790.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44129.1.A1_s_at	A	A1TS	POPTR_0001s04610	POPTR_0001s04610 (11)	scaffold_1:3589928-3590404(+) (11)	NA	Q54BM5	Branchpoint-bridging protein	AT3G32940.1	RNA-binding KH domain-containing protein 	LOC_Os08g01070.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g105450.1	"RNA binding, related "	NA	GO:0003723|RNA binding	NA
PtpAffx.44134.1.A1_at	A	A1TA	POPTR_0019s09900	POPTR_0019s09900 (10)	scaffold_19:11525834-11526348(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.44134.2.S1_at	A	A1MS	POPTR_0010s19920	POPTR_0010s19920 (11)	scaffold_10:17683081-17683274(+) (11)	NA	Q6GV12	3-ketodihydrosphingosine reductase	AT3G06060.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g47350.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g151090.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.44135.1.S1_at	A	A1TS	POPTR_0011s12050	POPTR_0011s12050 (9)	scaffold_11:14836895-14838588(+) (9)	NA	P71020	Putative RNA-binding protein ylmH	AT1G53120.1	RNA-binding S4 domain-containing protein 	LOC_Os01g54390.2	"S4 domain containing protein, putative, expressed"	Medtr2g100520.1	RNA-binding S4 	NA	GO:0003723|RNA binding	NA
PtpAffx.44158.1.A1_at	A	A1TS	POPTR_0006s07060	POPTR_0006s07060 (11)	scaffold_6:5084261-5084348(+) (11)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g130240.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.4416.1.S1_at	A	A1TS	POPTR_0015s12330	POPTR_0015s12330 (11)	scaffold_15:12613935-12614709(-) (11)	NA	Q91W78	UPF0406 protein C16orf57 homolog	AT5G51170.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g43480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44160.1.A1_at	A	A1TS	POPTR_0013s00590	POPTR_0013s00590 (11)	scaffold_13:285663-285764(+) (11)	NA	O82491	FACT complex subunit SPT16	AT4G10710.1	global transcription factor C 	LOC_Os04g25550.1	"FACT complex subunit SPT16, putative, expressed"	Medtr3g086680.1	Peptidase M24; 	GO:0009987|cellular process	NA	NA
PtpAffx.44164.1.S1_at	A	A1TS	POPTR_0003s02790	POPTR_0003s02790 (11)	scaffold_3:2910689-2911096(+) (11)	NA	NA	NA	AT4G19160.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44174.1.A1_at	A	A1TS	POPTR_0010s20550	POPTR_0010s20550 (11)	scaffold_10:18089883-18090130(+) (11)	NA	Q8W115	PRA1 family protein A3	AT3G11402.2	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os05g38160.1	"prenylated rab acceptor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44176.1.A1_at	A	A1TS	POPTR_0011s12230	POPTR_0011s12230 (10)	scaffold_11:14991862-14992145(+) (10)	NA	Q5ZLN0	Leucine-rich repeat-containing protein 40	AT3G15410.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g58030.1	"leucine-rich repeat-containing protein 40, putative, expressed"	Medtr7g117050.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.44182.1.A1_at	A	A1MS	POPTR_0002s18050	POPTR_0002s18050 (10)	scaffold_2:13928537-13928992(+) (10)	NA	Q689G6	Two-component response regulator-like PRR95	AT2G46790.1	pseudo-response regulator 9 	LOC_Os09g36220.2	"response regulator receiver domain containing protein, expressed"	Medtr7g146130.1	Response regulator receiver; CCT 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.44183.1.S1_at	A	A1TS	POPTR_0008s06660	POPTR_0008s06660 (11)	scaffold_8:3986752-3987183(-) (11)	NA	Q9ST43	Pleckstrin homology domain-containing protein 1	AT5G05710.1	Pleckstrin homology (PH) domain superfamily protein 	LOC_Os01g63800.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g089860.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44191.1.A1_at	A	A1TA	POPTR_0009s10800	POPTR_0009s10800 (9)	scaffold_9:9170708-9171258(-) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT2G03550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28620.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129340.1	"CXE carboxylesterase, putative "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.44197.1.A1_at	A	A1TS	POPTR_0009s09700	POPTR_0009s09700 (11)	scaffold_9:8509684-8510364(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.44199.1.A1_at	A	A2TS	POPTR_0016s10300	POPTR_0016s10300 (10)//POPTR_0016s10320 (10)	scaffold_16:8539038-8540602(+) (10)//scaffold_16:8548480-8549622(+) (10)	NA	Q8LG95	Pentatricopeptide repeat-containing protein At4g21190	AT1G04590.1	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os12g02950.1	"EMB2748, putative, expressed"	Medtr5g012280.1	"pentatricopeptide repeat-containing protein {Ara, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44201.1.S1_at	A	A1TS	POPTR_0015s10420	POPTR_0015s10420 (11)	scaffold_15:11361094-11362366(-) (11)	NA	NA	NA	AT1G67570.1	Protein of unknown function (DUF3537) 	LOC_Os08g03430.2	"extracellular ligand-gated ion channel, putative, expressed"	Medtr2g029220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44208.1.A1_at	A	A1TS	POPTR_0005s24270	POPTR_0005s24270 (11)	scaffold_5:22877802-22878044(-) (11)	NA	Q0V7S6	F-box/kelch-repeat protein OR23	AT4G03030.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g21110.1	"OsFBK6 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g134000.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44208.1.A1_s_at	A	A1TS	POPTR_0005s24270	POPTR_0005s24270 (11)	scaffold_5:22878062-22878348(-) (11)	NA	Q0V7S6	F-box/kelch-repeat protein OR23	AT4G03030.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g21110.1	"OsFBK6 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g134000.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44228.1.A1_at	A	A1TS	POPTR_0008s07430	POPTR_0008s07430 (11)	scaffold_8:4568512-4568708(+) (11)	NA	NA	NA	AT3G56140.1	Protein of unknown function (DUF399 and DUF3411) 	LOC_Os05g39680.1	"PX domain containing protein, expressed"	Medtr3g097110.1	Protein of unknown function DUF399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4423.2.A1_a_at	A	A1TS	POPTR_0009s10720	POPTR_0009s10720 (11)	scaffold_9:9144116-9144403(+) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT3G48700.1	carboxyesterase 13 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.44256.1.A1_at	A	A1TS	POPTR_0004s16380	POPTR_0004s16380 (11)	scaffold_4:16854979-16855488(-) (11)	NA	P43311	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os01g58100.1	"polyphenol oxidase, putative"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.4426.1.A1_at	A	A1TS	POPTR_0018s03990	POPTR_0018s03990 (11)	scaffold_18:3418594-3420770(-) (11)	NA	P54121	Protein AIG2	AT2G24390.1	AIG2-like (avirulence induced gene) family protein 	LOC_Os06g48960.1	"AIG2-like family domain containing protein, expressed"	Medtr3g132990.1	AIG2-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4426.2.A1_a_at	A	A1TS	POPTR_0006s29320	POPTR_0006s29320 (11)	scaffold_6:26730776-26730816(-) (11)	NA	P54121	Protein AIG2	AT2G24390.1	AIG2-like (avirulence induced gene) family protein 	LOC_Os06g48960.1	"AIG2-like family domain containing protein, expressed"	Medtr3g132990.1	AIG2-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4426.2.A1_at	A	A1MS	POPTR_0006s29320	POPTR_0006s29320 (11)	scaffold_6:26729583-26729983(-) (11)	NA	P54121	Protein AIG2	AT2G24390.1	AIG2-like (avirulence induced gene) family protein 	LOC_Os06g48960.1	"AIG2-like family domain containing protein, expressed"	Medtr3g132990.1	AIG2-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4426.3.A1_a_at	A	A1TS	POPTR_0006s29320	POPTR_0006s29320 (11)	scaffold_6:26728634-26728939(-) (11)	NA	P54121	Protein AIG2	AT2G24390.1	AIG2-like (avirulence induced gene) family protein 	LOC_Os06g48960.1	"AIG2-like family domain containing protein, expressed"	Medtr3g132990.1	AIG2-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44266.1.S1_at	A	A1TS	POPTR_0001s00850	POPTR_0001s00850 (11)	scaffold_1:709652-710114(-) (11)	NA	Q5KII2	Branchpoint-bridging protein	AT5G51300.3	splicing factor-related 	LOC_Os04g31620.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.44275.1.A1_at	A	A1TS	POPTR_0011s09750	POPTR_0011s09750 (11)	scaffold_11:12149100-12149660(-) (11)	NA	Q9FPS9	Ubiquitin carboxyl-terminal hydrolase 15	AT1G17110.1	ubiquitin-specific protease 15 	LOC_Os02g14730.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.44282.1.A1_at	A	A1TS	POPTR_0006s22110	POPTR_0006s22110 (11)	scaffold_6:21148859-21148916(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G52500.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58840.1	"Eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g105840.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44290.1.A1_at	A	A1TS	POPTR_0014s12020	POPTR_0014s12020 (11)	scaffold_14:8895855-8896237(+) (11)	NA	Q8GZ17	COBRA-like protein 7	AT4G16120.1	COBRA-like protein-7 precursor 	LOC_Os03g18910.1	"COBRA-like protein 7 precursor, putative, expressed"	Medtr5g005810.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44301.1.A1_s_at	A	A1TS	POPTR_0013s13160	POPTR_0013s13160 (11)	scaffold_13:13725827-13726302(-) (11)	NA	NA	NA	AT5G16250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g67110.1	expressed protein	Medtr7g090170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44301.2.A1_at	A	A1TS	POPTR_0019s12670	POPTR_0019s12670 (11)	scaffold_19:13656349-13656730(-) (11)	NA	NA	NA	AT5G16250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g41900.1	expressed protein	Medtr7g090170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44303.1.A1_at	A	A1TS	POPTR_0008s17150	POPTR_0008s17150 (11)	scaffold_8:11528412-11528724(+) (11)	NA	Q6NM73	Cysteine-rich repeat secretory protein 3	AT1G04520.1	plasmodesmata-located protein 2 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr1g064990.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44303.2.A1_a_at	A	A1TS	POPTR_0008s17150	POPTR_0008s17150 (11)	scaffold_8:11528168-11528870(+) (11)	NA	Q6NM73	Cysteine-rich repeat secretory protein 3	AT1G04520.1	plasmodesmata-located protein 2 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr1g064990.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4431.4.A1_a_at	A	A1TS	POPTR_0002s05590	POPTR_0002s05590 (11)	scaffold_2:3669298-3669759(+) (11)	NA	Q6H6V4	Auxin response factor 6	AT1G30330.1	auxin response factor 6 	LOC_Os02g06910.1	"auxin response factor 6, putative, expressed"	Medtr2g022250.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.4431.5.S1_at	A	A1TS	POPTR_0009s16920	POPTR_0009s16920 (11)	scaffold_9:12770064-12770439(+) (11)	NA	Q9XGM8	"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase"	AT4G38240.2	"alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative "	LOC_Os02g58590.1	"N-acetylglucosaminyltransferase I, putative, expressed"	Medtr3g164080.1	"Glycosyl transferase, family 13 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003827|""alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity"""	GO:0000139|Golgi membrane
PtpAffx.4431.7.S1_a_at	A	A1TS	POPTR_0017s12360	POPTR_0017s12360 (11)	scaffold_17:12539762-12540278(-) (11)	NA	Q9LVP9	Vesicle transport v-SNARE 13	AT5G39510.1	Vesicle transport v-SNARE family protein 	LOC_Os01g51120.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr6g013360.1	Vesicle transport v-SNARE 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane
PtpAffx.4431.8.S1_a_at	A	A1TS	POPTR_0017s12360	POPTR_0017s12360 (11)	scaffold_17:12540776-12541162(-) (11)	NA	Q9LVP9	Vesicle transport v-SNARE 13	AT5G39510.1	Vesicle transport v-SNARE family protein 	LOC_Os01g51120.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr6g013360.1	Vesicle transport v-SNARE 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane
PtpAffx.44320.1.A1_s_at	A	A1TS	POPTR_0009s02810	POPTR_0009s02810 (11)	scaffold_9:3564587-3564937(-) (11)	NA	NA	NA	AT2G44430.1	DNA-binding bromodomain-containing protein 	LOC_Os07g37800.1	"bromodomain domain containing protein, expressed"	Medtr2g071440.1	Myb transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44331.1.A1_a_at	A	A1TS	POPTR_0002s24170	POPTR_0002s24170 (11)	scaffold_2:21597265-21598544(+) (11)	NA	NA	NA	AT3G07030.1	Alba DNA/RNA-binding protein 	LOC_Os03g06980.1	"nucleic acid binding protein, putative, expressed"	Medtr7g065010.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.44336.1.A1_at	A	A1TS	POPTR_0010s06870	POPTR_0010s06870 (11)	scaffold_10:8123251-8123710(+) (11)	NA	NA	NA	AT3G01860.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g69100.1	expressed protein	Medtr6g025370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4434.1.S1_s_at	A	A1TS	POPTR_0006s26940	POPTR_0006s26940 (11)	scaffold_6:24986710-24988013(-) (11)	POPTR_0018s01620 (6)	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.44341.1.S1_at	A	A1TS	POPTR_0009s11430	POPTR_0009s11430 (11)	scaffold_9:9499209-9500352(-) (11)	NA	Q949V6	Probable E3 ubiquitin-protein ligase ARI1	AT4G34370.1	RING/U-box superfamily protein 	LOC_Os03g13100.1	"ariadne-1, putative, expressed"	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.44353.1.A1_at	A	A1TS	POPTR_0009s01210	POPTR_0009s01210 (11)	scaffold_9:1390142-1390626(-) (11)	NA	Q9SJL9	Probable xyloglucan endotransglucosylase/hydrolase protein 32	AT2G36870.1	xyloglucan endotransglucosylase/hydrolase 32 	LOC_Os03g01800.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr2g113780.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.44362.1.A1_at	A	A1MS	POPTR_0035s00310	POPTR_0035s00310 (11)	scaffold_35:171406-171660(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.44372.1.A1_at	A	A1TS	POPTR_0004s10050	POPTR_0004s10050 (11)	scaffold_4:8588002-8590438(-) (11)	NA	A1A5F2	HEAT repeat-containing protein 5B	AT1G67140.1	HEAT repeat-containing protein 	LOC_Os06g30894.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44398.1.A1_at	A	A1TS	POPTR_0001s26090	POPTR_0001s26090 (11)	scaffold_1:25186561-25187008(+) (11)	NA	C0ZIY1	Pseudouridine-5'-phosphate glycosidase	AT1G50510.1	indigoidine synthase A family protein 	LOC_Os08g39420.2	"uncharacterized protein yeiN, putative, expressed"	Medtr4g032300.1	Indigoidine synthase A like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4440.1.S1_at	A	A1TS	POPTR_0006s06490	POPTR_0006s06490 (11)	scaffold_6:4658568-4659511(-) (11)	NA	NA	NA	AT5G32440.1	Ubiquitin system component Cue protein 	LOC_Os02g09180.1	"CUE domain containing protein, expressed"	Medtr4g005650.1	Ubiquitin system component Cue; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44413.1.A1_at	A	A1TS	POPTR_0001s02980	POPTR_0001s02980 (11)	scaffold_1:2363722-2364951(+) (11)	NA	P57750	Phosphoacetylglucosamine mutase	AT5G18070.1	phosphoglucosamine mutase-related 	LOC_Os07g09720.1	"phosphoacetylglucosamine mutase, putative, expressed"	Medtr5g014150.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.4442.1.A1_at	A	A1TS	POPTR_0009s11300	POPTR_0009s11300 (11)	scaffold_9:9441417-9442314(-) (11)	NA	Q9XIA9	Long chain acyl-CoA synthetase 2	AT1G49430.1	long-chain acyl-CoA synthetase 2 	LOC_Os11g35400.1	"AMP-binding enzyme, putative, expressed"	Medtr5g009390.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.44424.1.A1_at	A	A1TS	POPTR_0005s10520	POPTR_0005s10520 (11)	scaffold_5:7575579-7575631(+) (11)	NA	Q9HGL2	Uncharacterized calcium-binding protein C800.10c	AT1G21630.1	Calcium-binding EF hand family protein 	LOC_Os06g51250.1	"EF hand family protein, putative, expressed"	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44424.1.A1_s_at	A	A1TS	POPTR_0005s10520	POPTR_0005s10520 (11)	scaffold_5:7575331-7575729(+) (11)	NA	Q9HGL2	Uncharacterized calcium-binding protein C800.10c	AT1G21630.1	Calcium-binding EF hand family protein 	LOC_Os06g51250.1	"EF hand family protein, putative, expressed"	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44428.1.A1_at	A	A2TS	POPTR_0006s07870	POPTR_0006s07890 (10)//POPTR_0006s07870 (10)	scaffold_6:5750209-5751050(-) (10)//scaffold_6:5764741-5765585(-) (10)	NA	P38605	Cycloartenol synthase	AT2G07050.1	cycloartenol synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr5g008860.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.44429.1.S1_at	A	A1TS	POPTR_0001s36800	POPTR_0001s36800 (11)	scaffold_1:35524249-35525429(+) (11)	NA	NA	NA	AT2G34680.1	Outer arm dynein light chain 1 protein 	LOC_Os07g05470.1	"AIR9 protein, putative, expressed"	Medtr2g055450.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.44439.1.S1_a_at	A	A1TS	POPTR_0003s01750	POPTR_0003s01750 (11)	scaffold_3:1625134-1625364(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT5G64550.1	loricrin-related 	LOC_Os04g54830.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44450.1.A1_at	A	A1TA	POPTR_0004s23590	POPTR_0004s23590 (11)	scaffold_4:22253588-22254111(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44466.1.A1_at	A	A1TS	POPTR_0008s14950	POPTR_0008s14950 (11)	scaffold_8:9963122-9963425(-) (11)	NA	Q5KPA7	Vacuolar protein 8	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.44472.1.S1_at	A	A1TS	POPTR_0004s08930	POPTR_0004s08930 (11)	scaffold_4:7506280-7507970(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44472.1.S1_s_at	A	A1TS	POPTR_0004s08930	POPTR_0004s08930 (11)	scaffold_4:7507840-7508002(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44478.1.S1_at	A	A1TS	POPTR_0004s07930	POPTR_0004s07930 (11)	scaffold_4:6506310-6509318(+) (11)	NA	Q8H1U4	Anaphase-promoting complex subunit 5	AT1G06590.1	unknown protein; Has 380 Blast hits to 268 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 73; Plants - 49; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). 	LOC_Os12g43120.1	expressed protein	Medtr5g098230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44490.1.A1_at	A	A1TS	POPTR_0019s09240	POPTR_0019s09240 (11)	scaffold_19:10799955-10800204(-) (11)	NA	NA	NA	AT3G14172.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g21270.1	expressed protein	Medtr3g121880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44492.1.S1_a_at	A	A2TS	POPTR_0002s19430	POPTR_0002s19430 (11)//POPTR_1419s00200 (10)	scaffold_1419:5109-5404(-) (11)//scaffold_2:15394755-15395050(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44492.1.S1_at	A	A1TS	POPTR_0002s19430	POPTR_0002s19430 (11)	scaffold_1419:4995-5373(-) (11)//scaffold_2:15394786-15395164(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44494.1.A1_at	A	A1TS	POPTR_0003s14670	POPTR_0003s14670 (10)	scaffold_3:14678956-14679459(-) (10)	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.4450.1.A1_s_at	A	A1TS	POPTR_0017s08150	POPTR_0017s08150 (11)	scaffold_17:6598689-6598906(+) (11)	NA	Q99460	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4450.3.S1_at	A	A1TS	POPTR_0001s32150	POPTR_0001s32150 (11)	scaffold_1:30563440-30563863(+) (11)	NA	Q99460	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44503.1.S1_at	A	A1TS	POPTR_0005s20050	POPTR_0005s20050 (11)	scaffold_5:19067346-19067968(-) (11)	NA	NA	NA	AT1G21790.1	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os01g64930.1	expressed protein	Medtr3g100810.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.44505.1.A1_at	A	A1TS	POPTR_0004s14460	POPTR_0004s14460 (11)	scaffold_4:15030280-15030587(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44512.2.S1_at	A	A1TS	POPTR_0013s07880	POPTR_0013s07880 (9)	scaffold_13:6829851-6830345(+) (9)	NA	Q68FJ8	TOM1-like protein 2	AT5G16880.2	Target of Myb protein 1 	LOC_Os02g46962.3	"VHS and GAT domain containing protein, expressed"	Medtr5g007600.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.44512.3.S1_a_at	A	A1TS	POPTR_0013s07880	POPTR_0013s07880 (11)	scaffold_13:6825434-6825710(+) (11)	NA	Q68FJ8	TOM1-like protein 2	AT5G16880.2	Target of Myb protein 1 	LOC_Os02g46962.3	"VHS and GAT domain containing protein, expressed"	Medtr5g007600.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.44525.1.A1_at	A	A1TS	POPTR_0002s10620	POPTR_0002s10620 (11)	scaffold_2:7720495-7720992(+) (11)	NA	Q91784	Chromosome-associated kinesin KIF4	AT5G60930.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr5g075270.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.44528.1.A1_at	A	A1MA	POPTR_0006s04260	POPTR_0006s04260 (11)	scaffold_6:2923756-2924122(+) (11)	NA	NA	NA	AT5G14310.1	carboxyesterase 16 	LOC_Os12g15400.1	"CXE carboxylesterase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4453.1.S1_a_at	A	A2TS	POPTR_0010s05030	POPTR_0010s05030 (11)//POPTR_0010s05080 (11)	scaffold_10:6335898-6337146(-) (11)//scaffold_10:6484504-6485768(-) (11)	NA	P16016	"Carbonic anhydrase, chloroplastic"	AT3G01500.3	carbonic anhydrase 1 	LOC_Os01g45274.1	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr5g035580.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.44531.1.A1_at	A	A1TS	POPTR_0001s36720	POPTR_0001s36720 (11)	scaffold_1:35443441-35443657(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.4454.2.S1_at	A	A1TS	POPTR_0005s27940	POPTR_0005s27940 (11)	scaffold_5:25382524-25382747(-) (11)	NA	Q9FMY5	Splicing factor U2af small subunit B	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.4454.3.S1_at	A	A1TS	POPTR_0002s00480	POPTR_0002s00480 (10)	scaffold_2:185559-185837(+) (10)	NA	Q9FMY5	Splicing factor U2af small subunit B	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.44545.1.A1_at	A	A1TS	POPTR_0007s13040	POPTR_0007s13040 (9)	scaffold_7:13219842-13219876(-) (9)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT2G18280.2	tubby like protein 2 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44551.1.A1_at	A	A1TS	POPTR_0019s08600	POPTR_0019s08600 (11)	scaffold_19:10108779-10109301(+) (11)	NA	Q9SG96	RING-H2 finger protein ATL72	AT3G10910.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr7g080330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44563.1.A1_s_at	A	A1TS	POPTR_0002s20210	POPTR_0002s20210 (11)	scaffold_2:16161696-16162301(+) (11)	NA	O81635	Kinesin-4	AT5G27000.1	kinesin 4 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.44574.1.A1_at	A	A1TS	POPTR_0010s19090	POPTR_0010s19090 (11)	scaffold_10:17107391-17107891(+) (11)	NA	Q9SIY8	Laccase-5	AT2G40370.1	laccase 5 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr3g097050.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.44579.1.A1_s_at	A	A2TS	POPTR_0001s12040	POPTR_0001s12040 (10)//POPTR_0001s12050 (10)	scaffold_1:9342365-9343662(-) (10)//scaffold_1:9352963-9354273(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44583.1.A1_s_at	A	A1TS	POPTR_0002s10450	POPTR_0002s10450 (11)	scaffold_2:7547677-7549075(+) (11)	NA	Q5ZMM3	Rho GTPase-activating protein 15	AT4G24580.1	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g096580.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.44588.1.S1_at	A	A1TS	POPTR_0005s06370	POPTR_0005s06370 (9)	scaffold_5:4229218-4236202(+) (11)	NA	Q8H1R4	"ABC transporter I family member 10, chloroplastic"	AT4G33460.1	ABC transporter family protein 	LOC_Os01g56400.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g143340.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.44589.1.A1_at	A	A1TS	POPTR_0003s13320	POPTR_0003s13320 (11)	scaffold_3:13714367-13714479(+) (11)	NA	NA	NA	AT2G46150.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g53470.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr8g005060.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.44589.1.A1_s_at	A	A1TS	POPTR_0003s13320	POPTR_0003s13320 (11)	scaffold_3:13714116-13714373(+) (11)	NA	NA	NA	AT2G46150.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g53470.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr8g005060.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.44592.1.A1_at	A	A1TS	POPTR_0019s14040	POPTR_0019s14040 (11)	scaffold_19:14804618-14804998(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44592.2.S1_at	A	A1TA	POPTR_0019s14040	POPTR_0019s14040 (9)	scaffold_19:14804612-14804834(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44606.1.A1_at	A	A1TS	POPTR_0006s05080	POPTR_0006s05080 (11)	scaffold_6:3529991-3530257(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4462.1.S1_a_at	A	A2TS	POPTR_0010s15270	POPTR_0010s15270 (11)//POPTR_0010s15320 (11)	scaffold_10:14607032-14607292(+) (11)//scaffold_10:14637044-14637288(+) (11)	NA	P52407	"Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform"	AT4G16260.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g71830.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g038570.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.4462.1.S1_at	A	A1TS	POPTR_0010s15270	POPTR_0010s15270 (11)	scaffold_10:14606738-14607136(+) (11)	POPTR_0010s15320 (8)	P52407	"Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform"	AT4G16260.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g71830.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g038570.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.4464.1.S1_a_at	A	A1TS	POPTR_0001s02090	POPTR_0001s02090 (11)	scaffold_1:1561770-1561947(-) (11)	NA	NA	NA	AT4G17720.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g50790.1	"RNA recognition motif, putative, expressed"	Medtr8g077770.1	RNA-binding region RNP-1 (RNA recognition motif); Aldo/keto reductase 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.4465.1.S1_s_at	A	A2TS	POPTR_0004s18400	POPTR_0009s14000 (11)//POPTR_0004s18400 (11)	scaffold_4:18308001-18309907(+) (11)//scaffold_9:11053276-11055089(+) (11)	NA	Q9SZN1	V-type proton ATPase subunit B2	AT4G38510.5	"ATPase, V1 complex, subunit B protein "	LOC_Os01g51380.2	"ATP synthase, putative, expressed"	Medtr7g092560.1	ATPase FliI/YscN 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.4466.1.S1_s_at	A	A1TS	POPTR_0002s25260	POPTR_0002s25260 (11)	scaffold_2:22388323-22388556(-) (11)	NA	Q9LV66	Uncharacterized protein At5g48480	AT5G48480.1	Lactoylglutathione lyase / glyoxalase I family protein 	NA	NA	Medtr7g045650.1	"early tobacco anther 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4470.10.S1_a_at	A	A1TS	POPTR_0001s34960	POPTR_0001s34960 (11)	scaffold_1:33225275-33225448(-) (11)	NA	O22609	"Protease Do-like 1, chloroplastic"	AT3G27925.1	DegP protease 1 	LOC_Os05g49380.2	"OsDegp9 - Putative Deg protease homologue, expressed"	Medtr6g006560.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.4470.2.S1_at	A	A1TS	POPTR_0014s02220	POPTR_0014s02220 (11)	scaffold_14:1898143-1898342(+) (11)	NA	Q9STX3	F-box protein GID2	AT4G24210.1	F-box family protein 	NA	NA	Medtr5g104810.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4470.4.S1_a_at	A	A1TS	POPTR_0007s09630	POPTR_0007s09630 (11)	scaffold_7:9129957-9130105(+) (11)	NA	P10933	"Ferredoxin--NADP reductase, leaf isozyme, chloroplastic"	AT5G66190.1	ferredoxin-NADP(+)-oxidoreductase 1 	LOC_Os02g01340.2	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr5g022240.1	Oxidoreductase FAD/NAD(P)-binding 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.4470.7.S1_s_at	A	A1TS	POPTR_0001s34960	POPTR_0001s34960 (11)	scaffold_1:33223747-33224750(-) (11)	NA	O22609	"Protease Do-like 1, chloroplastic"	AT3G27925.1	DegP protease 1 	LOC_Os05g49380.2	"OsDegp9 - Putative Deg protease homologue, expressed"	Medtr6g006560.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.44701.1.S1_at	A	A1TS	POPTR_0010s21510	POPTR_0010s21510 (11)	scaffold_10:18758584-18762731(-) (11)	NA	B5FXN8	THO complex subunit 4	AT5G59950.5	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g01010.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g078540.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.44709.1.S1_at	A	A1TS	POPTR_0008s15900	POPTR_0008s15900 (11)	scaffold_8:10615062-10615412(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4471.1.S1_a_at	A	A1TS	POPTR_0015s00430	POPTR_0015s00430 (11)	scaffold_15:239650-240004(-) (11)	NA	P19954	"30S ribosomal protein 1, chloroplastic"	AT5G24490.1	"30S ribosomal protein, putative "	LOC_Os03g63950.1	"plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed"	Medtr3g122720.1	Sigma 54 modulation protein/ribosomal protein S30EA 	GO:0044238|primary metabolic process	GO:0005488|binding	NA
PtpAffx.4471.2.A1_at	A	A1TS	POPTR_0012s00590	POPTR_0012s00590 (11)	scaffold_12:288727-288965(-) (11)	NA	P19954	"30S ribosomal protein 1, chloroplastic"	AT5G24490.1	"30S ribosomal protein, putative "	LOC_Os03g63950.2	"plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed"	Medtr3g122720.1	Sigma 54 modulation protein/ribosomal protein S30EA 	GO:0044238|primary metabolic process	GO:0005488|binding	NA
PtpAffx.4471.4.S1_at	A	A1MS	POPTR_0015s00430	POPTR_0015s00430 (11)	scaffold_15:240268-240526(-) (11)	NA	P19954	"30S ribosomal protein 1, chloroplastic"	AT5G24490.1	"30S ribosomal protein, putative "	LOC_Os03g63950.1	"plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed"	Medtr3g122720.1	Sigma 54 modulation protein/ribosomal protein S30EA 	GO:0044238|primary metabolic process	GO:0005488|binding	NA
PtpAffx.4473.6.S1_at	A	A1MS	POPTR_0002s26270	POPTR_0002s26270 (11)	scaffold_2:23249197-23249314(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44736.1.S1_at	A	A1TS	POPTR_0015s10490	POPTR_0015s10490 (11)	scaffold_15:11397694-11397899(-) (11)	NA	Q08480	Adenylate kinase B	AT5G63400.1	adenylate kinase 1 	LOC_Os11g20790.1	"adenylate kinase, putative, expressed"	Medtr8g109570.1	Adenylate kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.44748.1.S1_at	A	A1TS	POPTR_0011s00470	POPTR_0011s00470 (11)	scaffold_11:189603-189640(+) (11)	NA	Q9C7F5	Nuclear transport factor 2	AT1G11570.2	NTF2-like 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
PtpAffx.44748.1.S1_s_at	A	A1TS	POPTR_0011s00470	POPTR_0011s00470 (11)	scaffold_11:189324-189575(+) (11)	NA	Q9C7F5	Nuclear transport factor 2	AT1G11570.2	NTF2-like 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
PtpAffx.44762.1.A1_at	A	A1TS	POPTR_0008s04620	POPTR_0008s04620 (10)	scaffold_8:2640493-2641268(-) (10)	NA	Q8BK75	UPF0405 protein C3orf75 homolog	AT4G10090.1	elongator protein 6 	LOC_Os03g17560.1	expressed protein	Medtr7g047710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44821.1.A1_at	A	A1MS	POPTR_0010s18455	POPTR_0010s18455 (9)	scaffold_10:16683121-16683218(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44821.1.A1_s_at	A	A1TS	POPTR_0010s18460	POPTR_0010s18460 (11)	scaffold_10:16685275-16685359(+) (11)	NA	O04479	LOB domain-containing protein 6	AT1G65620.4	Lateral organ boundaries (LOB) domain family protein 	LOC_Os01g66590.3	"DUF260 domain containing protein, putative, expressed"	Medtr5g017910.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44823.1.A1_at	A	A1TS	POPTR_0008s19820	POPTR_0008s19820 (11)	scaffold_8:13676948-13677496(+) (11)	NA	Q7RTR2	Protein NLRC3	AT1G10510.1	RNI-like superfamily protein 	LOC_Os06g13050.1	"peroxidase family protein, expressed"	Medtr5g036720.1	"Leucine-rich repeat; Leucine-rich repeat, ribonuclease inhibitor subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.44845.1.S1_at	A	A1TS	POPTR_0013s10230	POPTR_0013s10230 (11)	scaffold_13:10249630-10251096(+) (11)	NA	NA	NA	AT4G09970.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.4485.1.S1_s_at	A	A1TS	POPTR_0005s05330	POPTR_0005s05330 (11)	scaffold_5:3533158-3533881(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT5G28300.1	Duplicated homeodomain-like superfamily protein 	LOC_Os02g43300.1	expressed protein	Medtr1g096240.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44880.1.S1_at	A	A1MS	POPTR_0019s08600	POPTR_0019s08600 (10)	scaffold_19:10107741-10108208(+) (10)	NA	Q9SG96	RING-H2 finger protein ATL72	AT3G10910.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr7g080330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44895.1.S1_at	A	A1TS	POPTR_0010s11530	POPTR_0010s11530 (11)	scaffold_10:11764829-11765227(+) (11)	NA	NA	NA	AT1G14780.1	MAC/Perforin domain-containing protein 	LOC_Os02g50340.1	"membrane attack complex component/perforin/complement C9, putative, expressed"	Medtr4g156820.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4490.1.A1_s_at	A	A1TS	POPTR_0001s17920	POPTR_0001s17920 (11)	scaffold_1:14854372-14854676(+) (11)	NA	NA	NA	AT3G15940.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g15780.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
PtpAffx.44916.1.A1_at	A	A1TS	POPTR_0005s02850	POPTR_0005s02850 (11)	scaffold_5:1847029-1847642(+) (11)	NA	Q91WG5	5'-AMP-activated protein kinase subunit gamma-2	AT1G09020.1	homolog of yeast sucrose nonfermenting 4 	LOC_Os03g63940.1	"CBS domain containing membrane protein, putative, expressed"	Medtr7g139100.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44916.2.A1_at	A	A1TS	POPTR_0013s02110	POPTR_0013s02110 (10)	scaffold_13:1257511-1257854(+) (10)	NA	Q09138	5'-AMP-activated protein kinase subunit gamma-1	AT1G09020.1	homolog of yeast sucrose nonfermenting 4 	LOC_Os03g63940.1	"CBS domain containing membrane protein, putative, expressed"	Medtr7g139100.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4493.1.A1_a_at	A	A1TS	POPTR_0018s12630	POPTR_0018s12630 (11)	scaffold_18:13161567-13161744(+) (11)	NA	Q00451	36.4 kDa proline-rich protein	AT2G10940.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g43600.2	"LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g121420.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	NA	GO:0005199|structural constituent of cell wall	NA
PtpAffx.4493.1.A1_x_at	A	A1TS	POPTR_0018s12630	POPTR_0018s12630 (11)	scaffold_18:13160518-13161744(+) (11)	NA	Q00451	36.4 kDa proline-rich protein	AT2G10940.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g43600.2	"LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g121420.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	NA	GO:0005199|structural constituent of cell wall	NA
PtpAffx.4493.2.A1_at	A	A1MS	POPTR_0018s12630	POPTR_0018s12630 (11)	scaffold_18:13160791-13160948(+) (11)	NA	Q00451	36.4 kDa proline-rich protein	AT2G10940.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g43600.2	"LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g121420.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	NA	GO:0005199|structural constituent of cell wall	NA
PtpAffx.4493.3.S1_s_at	A	A2TS	POPTR_0006s06430	POPTR_0006s06430 (11)//POPTR_0018s12630 (11)	scaffold_18:13160601-13160645(+) (11)//scaffold_6:4591244-4591288(+) (11)	NA	Q00451	36.4 kDa proline-rich protein	AT2G10940.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g43600.2	"LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g121420.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44935.1.A1_a_at	A	A1TS	POPTR_0018s07120	POPTR_0018s07120 (11)	scaffold_18:7312385-7312503(-) (11)	NA	Q9FEW9	12-oxophytodienoate reductase 3	AT2G06050.3	oxophytodienoate-reductase 3 	LOC_Os08g35740.1	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006840.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.44935.1.A1_at	A	A1TS	POPTR_0018s07120	POPTR_0018s07120 (11)	scaffold_18:7312215-7312663(-) (11)	NA	Q9FEW9	12-oxophytodienoate reductase 3	AT2G06050.3	oxophytodienoate-reductase 3 	LOC_Os08g35740.1	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006840.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.4495.1.S1_x_at	A	A1TS	POPTR_0016s03300	POPTR_0016s03300 (11)	scaffold_16:1705383-1705846(+) (11)	NA	Q43594	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.44969.1.S1_a_at	A	A1TS	POPTR_0010s02860	POPTR_0010s02860 (9)	scaffold_10:3344645-3344691(-) (9)	NA	Q42910	"Pyruvate, phosphate dikinase, chloroplastic"	AT4G15530.6	pyruvate orthophosphate dikinase 	LOC_Os05g33570.1	"pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed"	Medtr8g140100.1	"Pyruvate phosphate dikinase, PEP/pyruvate-binding; "	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.44969.1.S1_at	A	A1TS	POPTR_0010s02860	POPTR_0010s02860 (10)	scaffold_10:3344454-3344858(-) (10)	NA	Q42910	"Pyruvate, phosphate dikinase, chloroplastic"	AT4G15530.6	pyruvate orthophosphate dikinase 	LOC_Os05g33570.1	"pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed"	Medtr8g140100.1	"Pyruvate phosphate dikinase, PEP/pyruvate-binding; "	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.44974.1.S1_at	A	A1TS	POPTR_0002s06370	POPTR_0002s06370 (11)	scaffold_2:4235263-4235867(+) (11)	NA	NA	NA	AT1G71730.1	unknown protein; Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os05g08920.1	"late embryogenesis abundant protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44975.1.A1_at	A	A1TS	POPTR_0008s07890	POPTR_0008s07890 (11)	scaffold_8:4856349-4858219(+) (11)	NA	Q54K56	Beta-hexosaminidase subunit B2	AT1G65590.1	beta-hexosaminidase 3 	LOC_Os01g66700.1	"beta-hexosaminidase precursor, putative, expressed"	Medtr2g080430.1	"Glycoside hydrolase, family 20; ; "	GO:0005975|carbohydrate metabolic process	GO:0004563|beta-N-acetylhexosaminidase activity	NA
PtpAffx.44982.1.S1_at	A	A1TS	POPTR_0009s05400	POPTR_0009s05400 (11)	scaffold_9:5515637-5516910(+) (11)	NA	O24133	"Magnesium-chelatase subunit chlD, chloroplastic"	AT1G08520.1	ALBINA 1 	LOC_Os03g59640.1	"magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed"	Medtr5g009080.1	"von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.450.1.S1_a_at	A	A2TS	POPTR_0001s13350	POPTR_0003s16480 (11)//POPTR_0001s13350 (11)	scaffold_1:10440885-10441502(-) (11)//scaffold_3:16068760-16069299(-) (11)	NA	Q38799	"Pyruvate dehydrogenase E1 component subunit beta, mitochondrial"	AT5G50850.1	Transketolase family protein 	LOC_Os08g42410.1	"transketolase, putative, expressed"	Medtr7g005080.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.450.1.S1_at	A	A1TS	POPTR_0003s16480	POPTR_0003s16480 (10)	scaffold_3:16068298-16068773(-) (10)	NA	Q38799	"Pyruvate dehydrogenase E1 component subunit beta, mitochondrial"	AT5G50850.1	Transketolase family protein 	LOC_Os08g42410.1	"transketolase, putative, expressed"	Medtr7g005080.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.450.2.S1_at	A	A1MA	POPTR_0001s13350	POPTR_0001s13350 (9)	scaffold_1:10444501-10444930(+) (9)	NA	Q38799	"Pyruvate dehydrogenase E1 component subunit beta, mitochondrial"	AT5G50850.1	Transketolase family protein 	LOC_Os08g42410.1	"transketolase, putative, expressed"	Medtr7g005080.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.450.3.S1_at	A	A1TS	POPTR_0001s42270	POPTR_0001s42270 (11)	scaffold_1:42026368-42026781(+) (11)	NA	NA	NA	AT4G27280.1	Calcium-binding EF-hand family protein 	LOC_Os06g46950.1	"EF hand family protein, putative, expressed"	Medtr2g095910.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.450.5.A1_a_at	A	A1TS	POPTR_0001s13350	POPTR_0001s13350 (11)	scaffold_1:10440572-10440871(-) (11)	NA	Q38799	"Pyruvate dehydrogenase E1 component subunit beta, mitochondrial"	AT5G50850.1	Transketolase family protein 	LOC_Os08g42410.1	"transketolase, putative, expressed"	Medtr7g005080.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.450.6.S1_a_at	A	A1TS	POPTR_0003s16480	POPTR_0003s16480 (11)	scaffold_3:16071469-16072532(-) (11)	POPTR_0001s13350 (6)	Q38799	"Pyruvate dehydrogenase E1 component subunit beta, mitochondrial"	AT5G50850.1	Transketolase family protein 	LOC_Os08g42410.1	"transketolase, putative, expressed"	Medtr7g005080.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.4504.1.S1_a_at	A	A1TS	POPTR_0010s13670	POPTR_0010s13670 (11)	scaffold_10:13465631-13466012(+) (11)	NA	NA	NA	AT1G68585.1	unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g068180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4504.2.A1_a_at	A	A1MS	POPTR_0010s13680	POPTR_0010s13680 (9)	scaffold_10:13470101-13470250(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45054.1.S1_at	A	A1TS	POPTR_0007s02130	POPTR_0007s02130 (11)	scaffold_7:1245703-1246176(-) (11)	NA	Q84RR0	Probable E3 ubiquitin-protein ligase ARI7	AT2G31510.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.4506.1.S1_s_at	A	A2TS	POPTR_0013s15560	POPTR_0019s15250 (11)//POPTR_0013s15560 (11)	scaffold_13:15508972-15509096(+) (11)//scaffold_19:15807170-15807294(+) (11)	NA	Q9SPB3	60S ribosomal protein L10	AT1G26910.1	Ribosomal protein L16p/L10e family protein 	LOC_Os11g11390.1	"ribosomal protein, putative, expressed"	Medtr2g132470.1	Ribosomal protein L10E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.4506.3.S1_at	A	A1MS	POPTR_0013s15560	POPTR_0013s15560 (9)	scaffold_13:15509169-15509763(+) (9)	NA	Q9SPB3	60S ribosomal protein L10	AT1G26910.1	Ribosomal protein L16p/L10e family protein 	LOC_Os11g11390.1	"ribosomal protein, putative, expressed"	Medtr2g132470.1	Ribosomal protein L10E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.4508.1.S1_at	A	A1TS	POPTR_0002s04630	POPTR_0002s04630 (11)	scaffold_2:2890803-2891739(-) (11)	NA	NA	NA	AT5G43680.2	unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os11g34950.1	expressed protein	Medtr1g083470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4509.1.S1_at	A	A1TS	POPTR_0003s14910	POPTR_0003s14910 (11)	scaffold_3:14844585-14845590(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g56620.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45099.1.S1_s_at	A	A1TS	POPTR_0007s11210	POPTR_0007s11210 (11)	scaffold_7:11507390-11507541(+) (11)	NA	NA	NA	AT3G50620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr5g017700.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45106.1.A1_at	A	A1TS	POPTR_0001s20520	POPTR_0001s20520 (11)	scaffold_1:18477572-18477731(-) (11)	NA	Q9USM7	Mitochondrial import inner membrane translocase subunit tim23	AT1G17530.1	translocase of inner mitochondrial membrane 23 	LOC_Os03g02390.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr8g021830.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.45112.1.S1_at	A	A1TS	POPTR_0012s10940	POPTR_0012s10940 (11)	scaffold_12:11597511-11598008(+) (11)	NA	P52423	"Phosphoribosylglycinamide formyltransferase, chloroplastic"	AT1G31220.1	Formyl transferase 	LOC_Os08g39160.1	"formyl transferase, putative, expressed"	Medtr1g008220.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.45149.1.S1_at	A	A1TS	POPTR_0002s08830	POPTR_0002s08830 (11)	scaffold_2:6207362-6211553(+) (11)	NA	P50747	Biotin--protein ligase	AT2G25710.2	holocarboxylase synthase 1 	LOC_Os02g07040.2	"biotin--protein ligase, putative, expressed"	Medtr3g098110.2	Biotin--acetyl-CoA-carboxylase ligase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0003824|catalytic activity	NA
PtpAffx.45156.1.S1_s_at	A	A1TS	POPTR_0005s17580	POPTR_0005s17580 (11)	scaffold_5:15171032-15171573(-) (11)	NA	Q9LTX2	Transport inhibitor response 1-like protein	AT5G49980.1	auxin F-box protein 5 	LOC_Os02g52230.1	"coronatine-insensitive protein 1, putative, expressed"	Medtr5g074580.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45159.1.S1_at	A	A1TS	POPTR_0014s07490	POPTR_0014s07490 (11)	scaffold_14:5633959-5634034(-) (11)	NA	NA	NA	AT3G61200.1	Thioesterase superfamily protein 	LOC_Os07g27870.1	"thioesterase family protein, putative, expressed"	Medtr8g034300.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45159.1.S1_s_at	A	A1TS	POPTR_0014s07490	POPTR_0014s07490 (11)	scaffold_14:5633191-5633519(-) (11)	NA	NA	NA	AT3G61200.1	Thioesterase superfamily protein 	LOC_Os07g27870.1	"thioesterase family protein, putative, expressed"	Medtr8g034300.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45182.1.A1_at	A	A1TS	POPTR_0010s24130	POPTR_0010s24130 (11)	scaffold_10:20494863-20495210(-) (11)	NA	NA	NA	AT4G40045.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g068520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45188.1.A1_at	A	A1TS	POPTR_0010s21310	POPTR_0010s21310 (11)	scaffold_10:18644563-18645022(-) (11)	NA	NA	NA	AT5G59350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g47730.2	expressed protein	Medtr7g025740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45190.1.A1_at	A	A1TS	POPTR_0015s00730	POPTR_0015s00730 (11)	scaffold_15:426655-427038(-) (11)	NA	NA	NA	AT1G64720.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g02910.1	"membrane related protein CP5, putative, expressed"	Medtr3g122780.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45194.1.S1_s_at	A	A1TS	POPTR_0001s06560	POPTR_0001s06560 (11)	scaffold_1:5049313-5049601(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G54400.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g46480.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g043180.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45196.1.S1_at	A	A1TS	POPTR_0019s12490	POPTR_0019s12490 (11)	scaffold_19:13537451-13537883(+) (11)	NA	NA	NA	AT4G28300.1	Protein of unknown function (DUF1421) 	LOC_Os01g55050.2	"protein of unknown function DUF1421 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45202.1.S1_at	A	A1TS	POPTR_0018s12710	POPTR_0018s12710 (9)	scaffold_18:13223856-13224089(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45220.1.A1_at	A	A1TS	POPTR_0002s15690	POPTR_0002s15690 (11)	scaffold_2:11719754-11720786(-) (11)	NA	NA	NA	AT3G61200.1	Thioesterase superfamily protein 	LOC_Os07g27870.1	"thioesterase family protein, putative, expressed"	Medtr8g034300.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45229.2.S1_a_at	A	A1TS	POPTR_0011s14800	POPTR_0011s14800 (11)	scaffold_11:17067330-17067521(+) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT1G13680.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os03g30130.2	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45250.1.A1_at	A	A1MS	POPTR_0016s14440	POPTR_0016s14440 (10)	scaffold_16:13647784-13647975(+) (10)//scaffold_16:13659911-13660094(+) (9)	POPTR_0016s14460 (8)	P24465	Cytochrome P450 71A1	AT3G48320.1	"cytochrome P450, family 71, subfamily A, polypeptide 21 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.45250.1.A1_s_at	A	A2TS	POPTR_0016s14460	POPTR_0016s14460 (11)//POPTR_0016s14440 (10)	scaffold_16:13647961-13648278(+) (10)//scaffold_16:13660080-13660397(+) (11)	NA	P24465	Cytochrome P450 71A1	AT3G48310.1	"cytochrome P450, family 71, subfamily A, polypeptide 22 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.45276.2.S1_at	A	A1MS	POPTR_0014s14220	POPTR_0014s14220 (10)	scaffold_14:10414379-10415127(+) (10)	NA	Q8N5U6	RING finger protein 10	AT3G26730.1	RING/U-box superfamily protein 	LOC_Os02g31150.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g097010.1	"Zinc finger, RING-type; Site-specific recombinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4529.1.S1_a_at	A	A2TS	POPTR_0006s12860	POPTR_0006s12860 (11)//POPTR_0016s09240 (11)	scaffold_16:7233522-7233947(+) (11)//scaffold_6:10020818-10021195(-) (11)	NA	Q945K7	"Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial"	AT5G03290.1	isocitrate dehydrogenase V 	LOC_Os01g16900.2	"dehydrogenase, putative, expressed"	Medtr3g148020.1	"Isocitrate dehydrogenase NAD-dependent, mitochondrial "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.4529.1.S1_at	A	A1TS	POPTR_0006s12860	POPTR_0006s12860 (11)	scaffold_6:10020163-10020825(-) (11)	NA	Q945K7	"Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial"	AT5G03290.1	isocitrate dehydrogenase V 	LOC_Os01g16900.2	"dehydrogenase, putative, expressed"	Medtr3g148020.1	"Isocitrate dehydrogenase NAD-dependent, mitochondrial "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.4533.1.S1_at	A	A1TS	POPTR_0018s08410	POPTR_0018s08410 (11)	scaffold_18:9354862-9355111(-) (11)	NA	NA	NA	AT5G21940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g35630.1	"MTD1, putative, expressed"	Medtr1g019780.1	"MTD1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45339.1.S1_at	A	A1TS	POPTR_0004s05010	POPTR_0004s05010 (11)	scaffold_4:3761948-3762373(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45360.1.S1_at	A	A1TS	POPTR_0010s24440	POPTR_0010s24440 (9)	scaffold_10:20647481-20647724(-) (9)	NA	Q99JF5	Diphosphomevalonate decarboxylase	AT3G54250.1	GHMP kinase family protein 	LOC_Os02g01920.1	"GHMP kinases ATP-binding protein, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.45383.2.A1_a_at	A	A1TS	POPTR_0015s01500	POPTR_0015s01500 (11)	scaffold_15:929813-930311(+) (11)	NA	NA	NA	AT4G22000.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g02410.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.1.A1_a_at	A	A1TS	POPTR_0005s26930	POPTR_0005s26930 (9)	scaffold_5:24773158-24773190(-) (9)	NA	P42759	Dehydrin ERD10	AT1G20450.1	Dehydrin family protein 	NA	NA	Medtr3g162880.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
PtpAffx.454.10.A1_at	A	A1TS	POPTR_0002s12850	POPTR_0002s12850 (10)	scaffold_2:9561576-9562149(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g11030.1	"EF hand family protein, putative, expressed"	Medtr1g024720.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.12.S1_s_at	A	A2TS	POPTR_0017s01120	POPTR_1177s00200 (11)//POPTR_0017s01120 (11)	scaffold_1177:4036-4255(+) (11)//scaffold_17:798986-802801(-) (11)	NA	NA	NA	AT5G52740.1	Copper transport protein family 	LOC_Os03g03500.1	"heavy metal-associated domain containing protein, expressed"	Medtr6g061870.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.454.13.S1_at	A	A1TS	POPTR_0002s12890	POPTR_0002s12890 (11)	scaffold_2:9579135-9579625(-) (11)	NA	P73212	Putative dihydroflavonol-4-reductase	AT4G33360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g08624.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr3g147990.1	"Putative dihydroflavonol-4-reductase, "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.454.14.A1_s_at	A	A1TS	POPTR_0005s26930	POPTR_0005s26930 (11)	scaffold_5:24773713-24773752(-) (11)	NA	P42759	Dehydrin ERD10	AT1G20450.1	Dehydrin family protein 	NA	NA	Medtr3g162880.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
PtpAffx.454.15.A1_a_at	A	A1TS	POPTR_0006s21620	POPTR_0006s21620 (11)	scaffold_6:20650698-20651286(+) (11)	NA	NA	NA	AT3G44150.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g44560.1	"expp1 protein precursor, putative, expressed"	Medtr1g149660.1	"expp1 protein precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.2.S1_x_at	A	A1TS	POPTR_0002s18010	POPTR_0002s18010 (11)	scaffold_2:13902177-13903108(+) (11)	NA	P52855	60S acidic ribosomal protein P1	AT5G24510.1	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.454.20.S1_x_at	A	A1TS	POPTR_0002s18010	POPTR_0002s18010 (10)	scaffold_2:13902408-13903201(+) (10)	NA	P52855	60S acidic ribosomal protein P1	AT5G24510.1	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.454.21.A1_at	A	A2TS	POPTR_0017s01120	POPTR_1177s00200 (11)//POPTR_0017s01120 (11)	scaffold_1177:3570-4331(+) (11)//scaffold_17:802506-803271(-) (11)	NA	NA	NA	AT5G52740.1	Copper transport protein family 	LOC_Os03g03500.1	"heavy metal-associated domain containing protein, expressed"	Medtr6g061870.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.454.22.A1_at	A	A1TS	POPTR_0002s23530	POPTR_0002s23530 (10)	scaffold_2:21072256-21072637(-) (10)	NA	P40691	Auxin-induced protein PCNT115	AT1G60710.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g26910.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g021880.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.454.23.A1_at	A	A1TS	POPTR_0016s06840	POPTR_0016s06840 (11)	scaffold_16:4620530-4621078(+) (11)	NA	NA	NA	AT3G44150.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g44560.1	"expp1 protein precursor, putative, expressed"	Medtr1g149660.1	"expp1 protein precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.27.A1_at	A	A1TS	POPTR_0009s10790	POPTR_0009s10790 (11)	scaffold_9:9167591-9167950(-) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT2G03550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g11130.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.454.28.S1_s_at	A	A3TS	POPTR_0016s13130	POPTR_0016s13130 (11)//POPTR_0437s00200 (11)//POPTR_0016s13150 (10)	scaffold_16:12396691-12397126(+) (11)//scaffold_16:12412530-12412965(+) (10)//scaffold_437:1206-1634(-) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G01550.1	lectin receptor kinase a4.1 	LOC_Os10g38960.1	"lectin-like receptor kinase, putative"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.454.3.S1_a_at	A	A1TS	POPTR_0014s14490	POPTR_0014s14490 (11)	scaffold_14:10616097-10616156(-) (11)	NA	P40691	Auxin-induced protein PCNT115	AT1G60710.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g26910.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g021880.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.454.3.S1_x_at	A	A1TS	POPTR_0014s14490	POPTR_0014s14490 (11)	scaffold_14:10615777-10616292(-) (11)	NA	P40691	Auxin-induced protein PCNT115	AT1G60710.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g26910.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g021880.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.454.34.A1_at	A	A1MS	POPTR_0002s04520	POPTR_0002s04520 (10)	scaffold_2:2828708-2828881(+) (10)	NA	Q41387	"Photosystem II reaction center W protein, chloroplastic"	AT2G30570.1	photosystem II reaction center W 	LOC_Os05g43310.1	"photosystem II reaction center W protein, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	GO:0009523|photosystem II||GO:0009507|chloroplast
PtpAffx.454.36.A1_at	A	A1TA	POPTR_0002s12890	POPTR_0002s12890 (10)	scaffold_2:9584336-9584778(+) (11)	NA	P73212	Putative dihydroflavonol-4-reductase	AT4G33360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g08624.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr3g147990.1	"Putative dihydroflavonol-4-reductase, "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.454.37.A1_a_at	A	A1TS	POPTR_0016s06840	POPTR_0016s06840 (11)	scaffold_16:4617767-4617956(+) (11)	NA	NA	NA	AT3G44150.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g44560.1	"expp1 protein precursor, putative, expressed"	Medtr1g149660.1	"expp1 protein precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.4.A1_x_at	A	A1TS	POPTR_0006s02750	POPTR_0006s02750 (11)	scaffold_6:1745649-1745885(+) (11)	NA	P27164	Calmodulin-related protein	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.5.A1_at	A	A1TS	POPTR_0012s07750	POPTR_0012s07750 (11)	scaffold_12:8659477-8659934(-) (11)	NA	NA	NA	AT1G19020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g50710.1	expressed protein	Medtr8g125030.1	"UVI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.6.A1_at	A	A1TS	POPTR_0002s04520	POPTR_0002s04520 (11)	scaffold_2:2828520-2828565(+) (11)	NA	Q41387	"Photosystem II reaction center W protein, chloroplastic"	AT2G30570.1	photosystem II reaction center W 	LOC_Os05g43310.1	"photosystem II reaction center W protein, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	GO:0009523|photosystem II||GO:0009507|chloroplast
PtpAffx.454.6.A1_s_at	A	A1TS	POPTR_0002s04520	POPTR_0002s04520 (11)	scaffold_2:2828968-2829194(+) (11)	NA	Q41387	"Photosystem II reaction center W protein, chloroplastic"	AT2G30570.1	photosystem II reaction center W 	LOC_Os05g43310.1	"photosystem II reaction center W protein, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	GO:0009523|photosystem II||GO:0009507|chloroplast
PtpAffx.454.7.A1_s_at	A	A1TS	POPTR_0016s02540	POPTR_0016s02540 (11)	scaffold_16:1252460-1252495(+) (11)	NA	P27164	Calmodulin-related protein	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.7.A1_x_at	A	A1TS	POPTR_0016s02540	POPTR_0016s02540 (11)	scaffold_16:1252691-1252945(+) (11)	NA	P27164	Calmodulin-related protein	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.8.S1_at	A	A1TS	POPTR_0003s10860	POPTR_0003s10860 (11)	scaffold_3:11717001-11717725(+) (11)	NA	Q96331	"23.6 kDa heat shock protein, mitochondrial"	AT4G25200.1	mitochondrion-localized small heat shock protein 23.6 	LOC_Os02g52150.1	"heat shock 22 kDa protein, mitochondrial precursor, putative, expressed"	Medtr7g124360.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.9.S1_at	A	A1TS	POPTR_0002s06900	POPTR_0002s06900 (11)	scaffold_2:4661876-4662221(+) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4542.3.S1_a_at	A	A1TS	POPTR_0014s02810	POPTR_0014s02810 (11)	scaffold_14:2334263-2334493(-) (11)	NA	Q9M7Q4	ABSCISIC ACID-INSENSITIVE 5-like protein 5	AT1G45249.1	abscisic acid responsive elements-binding factor 2 	LOC_Os09g28310.1	"bZIP transcription factor, putative, expressed"	Medtr3g147720.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.4545.1.S1_at	A	A1MS	POPTR_0001s29620	POPTR_0001s29620 (10)	scaffold_1:28281421-28281514(+) (10)	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.4546.1.S1_at	A	A1TS	POPTR_0008s22930	POPTR_0008s22930 (11)	scaffold_8:18040392-18040904(+) (11)	NA	Q71VM4	Importin subunit alpha-1a	AT4G16143.2	importin alpha isoform 2 	LOC_Os01g14950.1	"importin subunit alpha, putative, expressed"	Medtr2g039000.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.4548.1.S1_at	A	A1TS	POPTR_0017s02900	POPTR_0017s02900 (11)	scaffold_17:2101606-2103536(+) (11)	NA	NA	NA	AT5G16620.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os04g35900.1	"translocon Tic40, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45480.1.A1_at	A	A1TS	POPTR_0010s19180	POPTR_0010s19180 (11)	scaffold_10:17167775-17168053(-) (11)	NA	Q8LBW3	LOB domain-containing protein 12	AT2G30130.1	Lateral organ boundaries (LOB) domain family protein 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g090730.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45481.1.S1_s_at	A	A1TS	POPTR_0003s09490	POPTR_0003s09490 (11)	scaffold_3:10792675-10793163(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G32240.1	Homeodomain-like superfamily protein 	LOC_Os02g46940.1	"MYB family transcription factor, putative, expressed"	Medtr5g029360.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45488.2.S1_at	A	A1TS	POPTR_0005s14540	POPTR_0005s14540 (11)	scaffold_5:11575750-11576105(-) (11)	NA	Q84TQ7	DELLA protein GAI	AT3G03450.1	RGA-like 2 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45488.4.S1_a_at	A	A2TS	POPTR_0004s08890	POPTR_0004s08890 (11)//POPTR_0005s14540 (11)	scaffold_4:7478098-7478369(-) (11)//scaffold_5:11576813-11577084(-) (11)	NA	Q84TQ7	DELLA protein GAI	AT1G14920.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45488.4.S1_at	A	A1TS	POPTR_0004s08890	POPTR_0004s08890 (11)	scaffold_4:7478206-7478547(-) (11)	NA	Q84TQ7	DELLA protein GAI	AT1G14920.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45495.1.S1_at	A	A1TS	POPTR_0018s00870	POPTR_0018s00870 (9)	scaffold_18:811689-811888(+) (9)	NA	NA	NA	AT5G11470.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g42460.1	"BAH domain containing protein, expressed"	Medtr3g132700.1	Bromo adjacent region 	NA	GO:0003677|DNA binding	NA
PtpAffx.45509.1.S1_s_at	A	A1TS	POPTR_0003s20080	POPTR_0003s20080 (11)	scaffold_3:18676885-18677267(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g029930.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.45530.1.S1_at	A	A1TS	POPTR_0002s18650	POPTR_0002s18650 (9)	scaffold_2:14506800-14507193(+) (9)	NA	Q96D53	Uncharacterized aarF domain-containing protein kinase 4	AT4G01660.1	ABC transporter 1 	LOC_Os01g21610.1	"uncharacterized aarF domain-containing protein kinase 4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45531.1.S1_at	A	A1TS	POPTR_0016s00300	POPTR_0016s00300 (11)	scaffold_16:39880-40372(+) (11)	NA	NA	NA	AT4G17150.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g40730.1	"protein with a conserved N-terminal region, putative, expressed"	Medtr2g033450.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4554.1.A1_at	A	A1MS	POPTR_0002s12710	POPTR_0002s12710 (10)	scaffold_2:9470069-9470351(-) (10)	NA	Q9M7Q4	ABSCISIC ACID-INSENSITIVE 5-like protein 5	AT1G45249.1	abscisic acid responsive elements-binding factor 2 	LOC_Os09g28310.1	"bZIP transcription factor, putative, expressed"	Medtr3g147720.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.45541.2.S1_at	A	A2TS	POPTR_0019s01750	POPTR_0019s01750 (11)//POPTR_0019s01730 (10)	scaffold_19:1508398-1508821(-) (10)//scaffold_19:1521908-1522332(-) (11)//scaffold_19:1534861-1535284(-) (10)	POPTR_0019s01770 (6)//POPTR_0019s01780 (6)	Q40412	"Zeaxanthin epoxidase, chloroplastic"	AT5G05320.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g05920.1	expressed protein	Medtr5g013370.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4558.1.S1_at	A	A1TS	POPTR_0019s09640	POPTR_0019s09640 (10)	scaffold_19:11239416-11239836(-) (10)	NA	Q5ZJX4	RNA-binding protein 38	AT1G33470.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g041420.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.4558.2.A1_at	A	A1TS	POPTR_0013s09120	POPTR_0013s09120 (10)	scaffold_13:8674971-8675416(-) (10)	NA	Q5ZJX4	RNA-binding protein 38	AT1G33470.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g041420.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.4558.3.A1_at	A	A1MS	POPTR_0019s09640	POPTR_0019s09640 (11)	scaffold_19:11244773-11245178(-) (11)	NA	Q5ZJX4	RNA-binding protein 38	AT1G33470.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g041420.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.4559.1.A2_at	A	A1TS	POPTR_0004s11300	POPTR_0004s11300 (11)	scaffold_4:9901266-9901696(-) (11)	NA	NA	NA	AT5G15780.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g13850.1	"POEI17 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr7g015090.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4559.1.A2_s_at	A	A1TS	POPTR_0004s11300	POPTR_0004s11300 (11)	scaffold_4:9901343-9901448(-) (11)	NA	NA	NA	AT5G15780.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g13850.1	"POEI17 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr7g015090.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4559.2.A1_x_at	A	A1TS	POPTR_0004s11300	POPTR_0004s11300 (11)	scaffold_4:9901939-9902322(-) (11)	NA	NA	NA	AT5G15780.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g13850.1	"POEI17 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr7g015090.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45611.1.S1_at	A	A1TS	POPTR_0001s22710	POPTR_0001s22710 (11)	scaffold_1:21600170-21602058(+) (11)	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45622.1.S1_at	A	A1TS	POPTR_0002s26220	POPTR_0002s26220 (11)	scaffold_2:23209454-23209994(+) (11)	NA	Q9LN50	Probable methyltransferase PMT28	AT1G19430.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g56390.1	"tRNA wybutosine-synthesizing protein 1, putative, expressed"	Medtr4g143020.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0010181|FMN binding||GO:0008168|methyltransferase activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.45629.1.S1_at	A	A1TS	POPTR_0019s07550	POPTR_0019s07550 (11)	scaffold_19:8600494-8603376(-) (11)	NA	NA	NA	AT3G10970.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g07632.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr3g097400.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.45629.2.S1_a_at	A	A1TS	POPTR_0019s07550	POPTR_0019s07550 (11)	scaffold_19:8606087-8606209(-) (11)	NA	NA	NA	AT3G10970.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g07632.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr3g097400.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.45629.2.S1_s_at	A	A1MS	POPTR_0013s04510	POPTR_0013s04510 (11)	scaffold_13:3097136-3097204(-) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.4566.1.A1_at	A	A1MS	POPTR_0016s00600	POPTR_0016s00600 (11)	scaffold_16:206094-206173(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4566.1.A1_s_at	A	A1TS	POPTR_0016s00600	POPTR_0016s00600 (11)	scaffold_16:205709-206076(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4568.7.A1_at	A	A1TA	POPTR_0006s18440	POPTR_0006s18440 (10)	scaffold_6:16880816-16883540(+) (10)	NA	Q28CH8	Protein YIPF6	AT2G18840.1	Integral membrane Yip1 family protein 	LOC_Os01g64760.1	"Yip1 domain containing protein, expressed"	Medtr8g128780.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4568.8.A1_at	A	A1TS	POPTR_0006s18440	POPTR_0006s18440 (11)	scaffold_6:16880552-16881259(-) (11)	NA	Q28CH8	Protein YIPF6	AT2G18840.1	Integral membrane Yip1 family protein 	LOC_Os01g64760.1	"Yip1 domain containing protein, expressed"	Medtr8g128780.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4568.9.S1_s_at	A	A1TS	POPTR_0003s04930	POPTR_0003s04930 (11)	scaffold_3:6025888-6026582(-) (11)	NA	Q41951	Aquaporin TIP2-1	AT3G16240.1	delta tonoplast integral protein 	LOC_Os06g22960.1	"aquaporin protein, putative, expressed"	Medtr8g015170.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.45681.1.S1_at	A	A1TS	POPTR_0002s03240	POPTR_0002s03240 (11)	scaffold_2:1990785-1991320(-) (11)	NA	Q9FWS9	BEL1-like homeodomain protein 3	AT1G75410.2	BEL1-like homeodomain 3 	LOC_Os12g43950.4	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45691.1.A1_a_at	A	A1TS	POPTR_0008s09200	POPTR_0008s09200 (11)	scaffold_8:5691229-5691682(-) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT2G03350.1	"Protein of unknown function, DUF538 "	LOC_Os03g11210.1	"DUF538 domain containing protein, putative, expressed"	Medtr5g046080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45691.2.A1_at	A	A1MS	POPTR_0008s09200	POPTR_0008s09200 (11)	scaffold_8:5691419-5691779(-) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT2G03350.1	"Protein of unknown function, DUF538 "	LOC_Os03g11210.1	"DUF538 domain containing protein, putative, expressed"	Medtr5g046080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45711.1.A1_at	A	A1TS	POPTR_0018s02410	POPTR_0018s02410 (11)	scaffold_18:2176339-2176864(+) (11)	NA	A1L1F4	Sister chromatid cohesion protein PDS5 homolog A	AT4G31880.1	"LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). "	LOC_Os02g39920.1	"AT hook motif family protein, expressed"	Medtr1g017070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45718.1.A1_at	A	A1TS	POPTR_0007s03170	POPTR_0007s03170 (11)	scaffold_7:1832883-1833590(+) (11)	NA	NA	NA	AT2G22570.1	nicotinamidase 1 	LOC_Os02g39400.1	"isochorismatase family protein, putative, expressed"	Medtr4g121200.1	Isochorismatase hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.45729.1.A1_at	A	A1TS	POPTR_0003s01280	POPTR_0003s01280 (9)	scaffold_3:1133511-1133702(-) (9)	NA	Q6P5E4	UDP-glucose:glycoprotein glucosyltransferase 1	AT1G71220.2	"UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups "	LOC_Os02g44510.1	"UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed"	Medtr2g007060.1	UDP-glucose:Glycoprotein Glucosyltransferase 	GO:0006486|protein amino acid glycosylation	GO:0003980|UDP-glucose:glycoprotein glucosyltransferase activity	NA
PtpAffx.45735.1.S1_at	A	A1TS	POPTR_0015s12420	POPTR_0015s12420 (9)	scaffold_15:12670047-12670820(-) (9)	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os12g41170.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45742.1.A1_at	A	A1TS	POPTR_0018s10020	POPTR_0018s10020 (11)	scaffold_18:11064974-11067104(-) (11)	NA	Q08623	Haloacid dehalogenase-like hydrolase domain-containing protein 1	AT5G57440.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g14580.1	"haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed"	Medtr8g129000.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.45745.1.S1_s_at	A	A2TS	POPTR_0004s01110	POPTR_0021s00450 (11)//POPTR_0004s01110 (11)	scaffold_21:144625-144745(-) (11)//scaffold_4:552962-553082(-) (11)	NA	O65399	"Glucan endo-1,3-beta-glucosidase 1"	AT1G11820.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g146960.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.45749.1.A1_a_at	A	A1TS	POPTR_0018s11420	POPTR_0018s11420 (11)	scaffold_18:12162804-12164444(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45770.2.A1_at	A	A1TS	POPTR_0003s08440	POPTR_0003s08440 (11)	scaffold_3:9848959-9850577(-) (11)	NA	NA	NA	AT5G47020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g10380.1	"glycine-rich protein, putative, expressed"	Medtr5g014010.1	"glycine-rich protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4579.1.S1_at	A	A1TS	POPTR_0001s02770	POPTR_0001s02770 (11)	scaffold_1:2184771-2186176(+) (11)	NA	Q39732	"Glycine cleavage system H protein, mitochondrial"	AT1G32470.1	Single hybrid motif superfamily protein 	LOC_Os10g37180.1	"glycine cleavage system H protein, putative, expressed"	Medtr5g014430.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
PtpAffx.45801.1.S1_at	A	A1TS	POPTR_0010s13770	POPTR_0010s13770 (9)	scaffold_10:13516699-13517029(-) (9)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT5G16080.1	carboxyesterase 17 	LOC_Os03g15270.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.45807.1.S1_at	A	A1TS	POPTR_0003s10100	POPTR_0003s10100 (10)	scaffold_3:11210765-11211326(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45816.1.S1_s_at	A	A1TS	POPTR_0005s23830	POPTR_0005s23830 (11)	scaffold_5:22562475-22562819(+) (11)	NA	NA	NA	AT3G22970.1	Protein of unknown function (DUF506)  	LOC_Os03g58230.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr1g083310.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45819.1.S1_at	A	A1TS	POPTR_0014s07580	POPTR_0014s07580 (9)	scaffold_14:5693489-5693834(+) (9)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.45820.1.A1_s_at	A	A1TS	POPTR_0012s07170	POPTR_0012s07170 (11)	scaffold_12:7944227-7944986(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT1G74690.1	IQ-domain 31 	LOC_Os05g45930.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g112590.2	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45840.1.A1_s_at	A	A1TS	POPTR_0014s02440	POPTR_0014s02440 (11)	scaffold_14:2046622-2048181(+) (11)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G43020.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.45841.1.S1_s_at	A	A1TS	POPTR_0001s35300	POPTR_0001s35300 (11)	scaffold_1:33635884-33637078(-) (11)	NA	Q5ZJW8	Denticleless protein homolog	AT3G27640.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g49200.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g005150.1	"Denticleless protein homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45844.1.A1_at	A	A1TS	POPTR_0010s12520	POPTR_0010s12520 (9)	scaffold_10:12534053-12534273(-) (9)	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.2	expressed protein	Medtr4g156620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45845.1.S1_at	A	A1TS	POPTR_0006s06250	POPTR_0006s06250 (10)	scaffold_6:4451799-4452990(+) (10)	NA	Q949Y3	Bifunctional purple acid phosphatase 26	AT5G34850.1	purple acid phosphatase 26 	LOC_Os06g43640.2	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.45853.1.S1_at	A	A1TS	POPTR_0018s01070	POPTR_0018s01070 (11)	scaffold_18:992816-992925(+) (11)	NA	Q5R8J8	DnaJ homolog subfamily B member 4	AT5G25530.1	DNAJ heat shock family protein 	LOC_Os08g06460.1	"dnaJ domain containing protein, expressed"	Medtr3g136130.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.45857.1.S1_s_at	A	A1TS	POPTR_0002s18240	POPTR_0002s18240 (11)	scaffold_2:14174189-14174716(-) (11)	NA	Q9SP32	Endoribonuclease Dicer homolog	AT1G01040.1	dicer-like 1 	LOC_Os03g02970.1	"Dicer, putative, expressed"	Medtr7g146220.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; ; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0004525|ribonuclease III activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.45875.1.S1_at	A	A1TS	POPTR_0001s28870	POPTR_0001s28870 (11)	scaffold_1:27638364-27638843(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45878.1.A1_at	A	A1TS	POPTR_0015s11750	POPTR_0015s11750 (11)	scaffold_15:12296178-12296624(+) (11)	NA	Q9FH50	"APO protein 3, mitochondrial"	AT5G61930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os07g40920.1	"APO, putative, expressed"	Medtr5g080800.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45880.1.A1_at	A	A1TS	POPTR_0005s17640	POPTR_0005s17640 (9)	scaffold_5:15237419-15237820(-) (11)	NA	Q9SGN7	Serine/threonine-protein kinase-like protein At1g28390	AT1G28390.1	Protein kinase superfamily protein 	LOC_Os05g32170.1	"TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr3g148970.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.45886.1.A1_at	A	A1TS	POPTR_0007s04830	POPTR_0007s04830 (11)	scaffold_5:4759249-4763345(-) (11)//scaffold_7:3015694-3018929(-) (11)	NA	NA	NA	AT5G08750.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g59580.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g143830.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45888.1.A1_at	A	A1TS	POPTR_0008s12850	POPTR_0008s12850 (10)	scaffold_8:8362418-8362617(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45890.1.A1_at	A	A1TS	POPTR_0007s12160	POPTR_0007s12160 (11)	scaffold_7:12471730-12472275(+) (11)	NA	NA	NA	AT3G50780.1	BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G63850.1); Has 298 Blast hits to 298 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g55950.4	"H-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	Medtr8g094180.1	PRLI-interacting factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45925.1.S1_at	A	A2MS	POPTR_0013s11390	POPTR_0013s11390 (11)//POPTR_0013s11470 (11)	scaffold_13:12070894-12071140(-) (11)//scaffold_13:12097727-12104487(-) (11)//scaffold_13:12104241-12109472(-) (11)	NA	Q8BGE5	Fanconi anemia group M protein homolog	AT1G35530.2	DEAD/DEAH box RNA helicase family protein  	LOC_Os11g07870.1	"DEAD/DEAH box helicase domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.4593.1.S1_at	A	A1TS	POPTR_0002s12620	POPTR_0002s12620 (9)	scaffold_2:9407002-9407535(+) (9)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os04g59330.1	expressed protein	Medtr4g155720.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.45956.1.S1_s_at	A	A1TS	POPTR_0003s12330	POPTR_0003s12330 (11)	scaffold_3:12940680-12940988(-) (11)	NA	Q9FUL4	60S ribosomal protein L24	AT2G36620.1	ribosomal protein L24 	LOC_Os01g59990.2	"ribosomal protein L24, putative, expressed"	Medtr1g073730.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.4597.1.A1_a_at	A	A2TS	POPTR_0001s05330	POPTR_0328s00200 (11)//POPTR_0001s05330 (11)	scaffold_1:4109837-4109916(-) (11)//scaffold_17:5708016-5708095(-) (11)//scaffold_328:7131-7210(+) (11)	NA	Q8GSM2	"Lipoxygenase 2.3, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.4597.1.A2_s_at	A	A3TS	POPTR_0001s05330	POPTR_0328s00200 (11)//POPTR_0017s07350 (11)//POPTR_0001s05330 (11)	scaffold_1:4106557-4107504(-) (11)//scaffold_17:5704725-5705672(-) (11)//scaffold_328:9610-10557(+) (11)	NA	Q8GSM2	"Lipoxygenase 2.3, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.4597.2.A1_at	A	A2MS	POPTR_0017s07350	POPTR_0328s00200 (11)//POPTR_0017s07350 (11)	scaffold_17:5708463-5708512(-) (11)//scaffold_328:6716-6765(+) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os08g39850.1	"lipoxygenase, chloroplast precursor, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.4597.2.A1_s_at	A	A4TS	POPTR_0001s05330	POPTR_0328s00210 (11)//POPTR_0328s00200 (11)//POPTR_0017s07350 (11)//POPTR_0001s05330 (11)	scaffold_1:4110326-4110663(-) (11)//scaffold_17:5708504-5708841(-) (11)//scaffold_328:6387-6724(+) (11)//scaffold_328:19187-19524(+) (11)	NA	Q8GSM2	"Lipoxygenase 2.3, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.4597.3.A1_at	A	A1MS	POPTR_0017s07350	POPTR_0017s07350 (11)	scaffold_17:5707950-5708307(-) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os08g39850.1	"lipoxygenase, chloroplast precursor, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.45980.1.A1_at	A	A1TS	POPTR_0005s20460	POPTR_0005s20460 (11)	scaffold_5:19503384-19503909(-) (11)	NA	Q2LAE1	Histone-lysine N-methyltransferase ASHH2	AT1G77300.1	histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) 	LOC_Os02g34850.1	"histone-lysine N-methyltransferase ASHH2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45989.1.S1_at	A	A1TS	POPTR_0012s12220	POPTR_0012s12220 (9)	scaffold_12:12454945-12455278(-) (9)	NA	Q71N54	Lecithine-cholesterol acyltransferase-like 4	AT4G19860.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os04g52500.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr4g114600.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4599.1.A1_at	A	A1TS	POPTR_0009s15960	POPTR_0009s15960 (11)	scaffold_9:12237538-12238064(-) (11)	NA	Q94AD8	F-box/WD-40 repeat-containing protein At5g21040	AT5G21040.2	F-box protein 2 	LOC_Os04g52870.1	"OsFBW1 - F-box domain and WD40 repeat containing protein, expressed"	Medtr5g094770.1	Cyclin-like F-box; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46007.1.S1_s_at	A	A2TS	POPTR_0011s13400	POPTR_0011s13400 (11)//POPTR_0489s00210 (10)	scaffold_11:16160117-16160587(-) (11)//scaffold_489:11967-12437(+) (11)	NA	Q9VCA2	Organic cation transporter protein	AT3G20660.1	organic cation/carnitine transporter4 	LOC_Os04g53930.2	"organic cation transporter protein, putative, expressed"	Medtr2g096180.1	Major facilitator superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4602.1.S1_s_at	A	A1TS	POPTR_0002s25420	POPTR_0002s25420 (11)	scaffold_2:22492252-22493381(-) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.4604.1.S1_at	A	A1TS	POPTR_0009s07340	POPTR_0009s07340 (10)	scaffold_9:6872837-6875932(-) (10)	NA	P0A265	Peptidyl-prolyl cis-trans isomerase C	AT5G19370.1	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein 	LOC_Os07g48810.1	"parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed"	Medtr5g096430.1	PpiC-type peptidyl-prolyl cis-trans isomerase; Rhodanese-like 	NA	GO:0016853|isomerase activity	NA
PtpAffx.46043.1.S1_s_at	A	A1TS	POPTR_0014s03240	POPTR_0014s03240 (11)	scaffold_14:2576498-2577426(-) (11)	NA	Q9LT08	26S proteasome non-ATPase regulatory subunit 14	AT5G23540.2	Mov34/MPN/PAD-1 family protein 	LOC_Os05g30800.1	"26S proteasome non-ATPase regulatory subunit 14, putative, expressed"	Medtr2g021360.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46068.1.A1_a_at	A	A1TS	POPTR_0010s20230	POPTR_0010s20230 (11)	scaffold_10:17909624-17910029(+) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os05g37900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46068.2.S1_a_at	A	A2TS	POPTR_0008s06300	POPTR_0010s20230 (11)//POPTR_0008s06300 (11)	scaffold_10:17909708-17909747(+) (11)//scaffold_8:3728105-3728144(-) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os05g37900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46068.2.S1_at	A	A1TS	POPTR_0008s06300	POPTR_0008s06300 (11)	scaffold_8:3727936-3728268(-) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os05g37900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46094.1.S1_at	A	A1TS	POPTR_0003s11710	POPTR_0003s11710 (11)	scaffold_3:12507301-12507426(+) (11)	NA	NA	NA	AT3G60890.2	protein binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46094.2.S1_at	A	A1TS	POPTR_0001s08220	POPTR_0001s08220 (11)	scaffold_1:6281970-6282649(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46102.1.A1_at	A	A1TS	POPTR_0010s11670	POPTR_0010s11670 (11)	scaffold_10:11863679-11864987(-) (11)	NA	P0C2G7	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	AT1G24880.1	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein 	LOC_Os03g12320.1	"UDP-3-O- N-acetylglucosamine deacetylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0009245|lipid A biosynthetic process	GO:0008759|UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity	NA
PtpAffx.46103.1.S1_at	A	A1TS	POPTR_0001s20350	POPTR_0001s20350 (11)	scaffold_1:18128688-18128871(+) (11)	NA	Q5HWH7	5'-nucleotidase surE	AT1G72880.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os01g51280.1	"5-nucleotidase surE, putative, expressed"	Medtr2g120880.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.46129.1.S1_at	A	A1TS	POPTR_0011s15240	POPTR_0011s15240 (11)	scaffold_11:17348424-17348918(+) (11)	NA	NA	NA	AT1G33055.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46139.1.S1_at	A	A1TS	POPTR_0014s09420	POPTR_0014s09420 (10)	scaffold_14:7006160-7006489(-) (10)	NA	NA	NA	AT3G61750.1	Cytochrome b561/ferric reductase transmembrane with DOMON related domain 	LOC_Os01g48850.1	"auxin-responsive protein, putative, expressed"	AC233651_15.1	DOMON; Cytochrome b561 / ferric reductase transmembrane AC233651.1 46198-48399 H EGN_Mt090430 200	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006548|histidine catabolic process	GO:0004500|dopamine beta-monooxygenase activity	NA
PtpAffx.4614.1.A1_a_at	A	A2TS	POPTR_0013s05040	POPTR_0019s04650 (11)//POPTR_0013s05040 (11)	scaffold_13:3560347-3560409(+) (11)//scaffold_19:4821111-4821173(+) (11)	NA	P52914	Nucleoside-triphosphatase	AT5G18280.1	apyrase 2 	LOC_Os03g21120.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.4614.1.A1_at	A	A1TS	POPTR_0013s05040	POPTR_0013s05040 (11)	scaffold_13:3560293-3560775(+) (11)	NA	P52914	Nucleoside-triphosphatase	AT5G18280.1	apyrase 2 	LOC_Os03g21120.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.4614.2.A1_at	A	A1TS	POPTR_0019s04650	POPTR_0019s04650 (11)	scaffold_19:4820912-4821423(+) (11)	NA	P52914	Nucleoside-triphosphatase	AT5G18280.1	apyrase 2 	LOC_Os07g48430.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.4615.1.S1_at	A	A1TS	POPTR_0017s12250	POPTR_0017s12250 (10)	scaffold_17:12480147-12480497(+) (10)	NA	Q94A21	SPX domain-containing protein 4	AT5G15330.1	SPX domain gene 4 	LOC_Os03g61200.1	expressed protein	Medtr8g092950.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46202.1.S1_at	A	A1TS	POPTR_0008s14110	POPTR_0008s14110 (11)	scaffold_8:9313794-9314107(+) (11)	NA	Q9LY43	Pentatricopeptide repeat-containing protein At3g56030	AT3G56030.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr6g071000.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46203.1.S1_s_at	A	A2TS	POPTR_0017s13140	POPTR_0017s13140 (11)//POPTR_0017s13220 (10)	scaffold_17:13300662-13301138(+) (11)//scaffold_17:13422888-13423364(+) (10)	POPTR_0017s13180 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46215.1.S1_a_at	A	A1TS	POPTR_0005s05620	POPTR_0005s05620 (11)	scaffold_5:3709178-3709560(+) (11)	NA	Q9M4C4	Probable prefoldin subunit 4	AT1G08780.1	ABI3-interacting protein 3 	LOC_Os03g43020.1	"prefoldin subunit, putative, expressed"	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.46215.3.S1_at	A	A1TS	POPTR_0013s03940	POPTR_0013s03940 (11)	scaffold_13:2582353-2584702(+) (11)	NA	Q9M4B5	Probable prefoldin subunit 4	AT1G08780.1	ABI3-interacting protein 3 	LOC_Os03g43020.1	"prefoldin subunit, putative, expressed"	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.46220.1.S1_at	A	A1TS	POPTR_0014s01320	POPTR_0014s01320 (11)	scaffold_14:1309534-1310041(+) (11)	NA	NA	NA	AT2G22840.1	growth-regulating factor 1 	LOC_Os03g51970.1	"growth-regulating factor, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.46220.2.A1_at	A	A1TS	POPTR_0002s11590	POPTR_0002s11590 (11)	scaffold_2:8658548-8659083(+) (11)	NA	NA	NA	AT2G22840.1	growth-regulating factor 1 	LOC_Os03g51970.1	"growth-regulating factor, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.46235.1.A1_at	A	A1TS	POPTR_0003s13000	POPTR_0003s13000 (11)	scaffold_3:13421792-13422015(-) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G41350.1	RING/U-box superfamily protein 	LOC_Os11g18947.2	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_12.1	"Zinc finger, RING-type AC235567.1 46372-52293 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4624.1.S1_at	A	A1TS	POPTR_0008s23260	POPTR_0008s23260 (11)	scaffold_8:18625951-18626381(-) (11)	NA	P42736	Ethylene-responsive transcription factor RAP2-3	AT3G16770.1	ethylene-responsive element binding protein 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr1g107940.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.46248.1.S1_s_at	A	A1TS	POPTR_0017s04620	POPTR_0017s04620 (11)	scaffold_17:3537756-3539819(+) (11)	NA	O49453	Uncharacterized protein At4g28440	AT4G28440.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4625.1.S1_a_at	A	A2TS	POPTR_0001s33620	POPTR_0001s33620 (11)//POPTR_0017s09700 (11)	scaffold_1:31851902-31851941(+) (11)//scaffold_17:8338171-8338210(-) (11)	NA	NA	NA	AT3G27027.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4625.1.S1_at	A	A1TS	POPTR_0017s09700	POPTR_0017s09700 (11)	scaffold_17:8337866-8338376(-) (11)	NA	NA	NA	AT3G27027.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46270.1.S1_at	A	A1TS	POPTR_0018s11050	POPTR_0018s11050 (10)	scaffold_18:11863988-11864796(-) (10)	NA	Q9ZP41	EG45-like domain containing protein	AT2G18660.1	plant natriuretic peptide A 	LOC_Os09g29690.1	"beta-expansin precursor, putative, expressed"	Medtr6g084060.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46275.1.S1_at	A	A1TS	POPTR_0019s01590	POPTR_0019s01590 (11)	scaffold_19:1407247-1409302(+) (11)	NA	P0CB26	Uncharacterized protein At1g10890	AT5G13340.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os10g15390.1	"ribosomal protein S7, putative, expressed"	Medtr2g007210.1	"Arginine and glutamate-rich protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46278.1.S1_at	A	A1TS	POPTR_0011s05880	POPTR_0011s05880 (10)	scaffold_11:5905832-5907258(+) (10)	NA	Q9P7W0	OPA3-like protein	AT1G28510.1	Optic atrophy 3 protein (OPA3) 	LOC_Os01g14020.2	expressed protein	Medtr2g018330.1	Optic atrophy 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46278.2.A1_at	A	A1TS	POPTR_0011s05880	POPTR_0011s05880 (11)	scaffold_11:5908744-5908975(+) (11)	NA	Q9P7W0	OPA3-like protein	AT1G28510.1	Optic atrophy 3 protein (OPA3) 	LOC_Os01g14020.2	expressed protein	Medtr2g018330.1	Optic atrophy 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46281.1.S1_at	A	A1TS	POPTR_0019s04130	POPTR_0019s04130 (10)	scaffold_19:4235467-4236075(+) (10)	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g42860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143160.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.46298.1.S1_at	A	A1TS	POPTR_0008s00530	POPTR_0008s00530 (10)	scaffold_8:222722-223357(+) (10)	NA	Q8LBL1	Calcium-activated outward-rectifying potassium channel 1	AT5G55630.2	Outward rectifying potassium channel protein 	LOC_Os03g54100.2	"potassium channel protein, putative, expressed"	Medtr5g103230.1	"Calcium-activated outward-rectifying potassium channel 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46328.1.A1_at	A	A1TS	POPTR_0009s08960	POPTR_0009s08960 (10)	scaffold_9:8055522-8056791(+) (10)	NA	Q9LJN2	Magnesium transporter MRS2-3	AT3G19640.1	magnesium transporter 4 	LOC_Os01g68040.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr5g005440.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4633.1.S1_s_at	A	A2TS	POPTR_0018s10040	POPTR_0018s10040 (11)//POPTR_0018s10080 (11)	scaffold_18:11076373-11076781(+) (11)//scaffold_18:11091621-11092030(+) (11)	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.4634.1.A1_at	A	A1TS	POPTR_0001s44210	POPTR_0001s44210 (11)	scaffold_1:44674481-44675103(-) (11)	NA	Q9XFT3	"Oxygen-evolving enhancer protein 3-1, chloroplastic"	AT3G01440.1	PsbQ-like 1 	LOC_Os07g01480.2	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.4636.1.A1_at	A	A1TS	POPTR_0006s20970	POPTR_0006s20970 (10)	scaffold_6:20065047-20065383(+) (11)	NA	Q39265	Zinc finger protein 6	AT3G58070.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os03g11680.1	"ZOS3-05 - C2H2 zinc finger protein, expressed"	Medtr5g067950.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46365.1.A1_at	A	A1TS	POPTR_0009s12890	POPTR_0009s12890 (11)	scaffold_9:10438207-10438707(-) (11)	NA	P33081	Auxin-induced protein 15A	AT4G34760.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24700.1	"OsSAUR8 - Auxin-responsive SAUR gene family member, expressed"	Medtr3g163140.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46412.1.S1_at	A	A1TS	POPTR_0008s11890	POPTR_0008s11890 (11)	scaffold_8:7627680-7628137(+) (11)	POPTR_0010s13560 (6)	Q9S7Y7	Alpha-xylosidase	AT1G68560.1	alpha-xylosidase 1 	LOC_Os01g03950.1	"glycosyl hydrolase, family 31, putative, expressed"	Medtr5g066370.1	"Glycoside hydrolase, family 31 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.46429.1.A1_at	A	A1TS	POPTR_0016s06040	POPTR_0016s06040 (10)	scaffold_16:3966177-3967802(-) (11)	NA	Q6S001	Kinesin-related protein 11	AT3G12020.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53520.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g112390.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.46431.1.S1_at	A	A1TS	POPTR_0008s13200	POPTR_0008s13200 (11)	scaffold_8:8649311-8650436(+) (11)	NA	Q9CAC1	Endoglucanase 8	AT1G70710.1	glycosyl hydrolase 9B1 	LOC_Os06g14540.1	"endoglucanase, putative, expressed"	Medtr4g157670.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.4645.1.S1_at	A	A1TS	POPTR_0011s10470	POPTR_0011s10470 (11)	scaffold_11:12907799-12909718(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT3G14770.1	Nodulin MtN3 family protein 	LOC_Os01g36070.1	"nodulin MtN3 family protein, putative, expressed"	AC147714_1.1	MtN3 and saliva related transmembrane protein AC147714.8 37997-39514 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4645.3.S1_a_at	A	A1TS	POPTR_0001s39200	POPTR_0001s39200 (11)	scaffold_1:38386727-38387015(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT3G14770.1	Nodulin MtN3 family protein 	LOC_Os01g36070.1	"nodulin MtN3 family protein, putative, expressed"	AC235677_9.1	MtN3 and saliva related transmembrane protein AC235677.1 36992-34899 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46455.1.S1_a_at	A	A1TS	POPTR_0009s13780	POPTR_0009s13780 (11)	scaffold_9:10924890-10926249(+) (11)	NA	Q8LBA6	CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1	AT1G68000.1	phosphatidylinositol synthase 1 	LOC_Os02g03110.2	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr4g098430.1	CDP-alcohol phosphatidyltransferase 	GO:0008654|phospholipid biosynthetic process	"GO:0016780|""phosphotransferase activity, for other substituted phosphate groups"""	GO:0016020|membrane
PtpAffx.4646.1.S1_a_at	A	A1TS	POPTR_0019s10500	POPTR_0019s10500 (11)	scaffold_19:12055779-12057079(+) (11)	NA	NA	NA	AT1G33810.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os08g02060.1	expressed protein	Medtr4g032520.1	"Transposase, mutator type; Plant MuDR transposase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4647.1.A1_at	A	A1TS	POPTR_0016s08270	POPTR_0016s08270 (11)	scaffold_16:6093859-6095945(-) (11)	NA	NA	NA	AT3G53490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g17440.1	expressed protein	AC235022_5.2	hypothetical protein AC235022.1 24557-22188 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46490.1.S1_at	A	A1TS	POPTR_0008s11760	POPTR_0008s11760 (10)	scaffold_8:7530236-7530760(+) (10)	NA	Q9FX64	Homologous-pairing protein 2 homolog	AT1G13330.1	Arabidopsis Hop2 homolog 	LOC_Os03g50220.1	"homologous-pairing protein meu13, putative, expressed"	Medtr5g068220.1	"Homologous-pairing protein 2 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46493.2.S1_at	A	A1TS	POPTR_0017s01240	POPTR_0017s01240 (11)	scaffold_17:870968-871013(+) (11)	NA	Q01332	Beta-carotene hydroxylase	AT4G25700.1	beta-hydroxylase 1 	LOC_Os03g03370.1	"fatty acid hydroxylase, putative, expressed"	Medtr1g126460.2	Carotene hydroxylase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.4650.2.A1_at	A	A1TS	POPTR_0014s08960	POPTR_0014s08960 (11)	scaffold_14:6621840-6621906(-) (11)	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G01150.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os06g15400.1	expressed protein	Medtr7g143530.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46500.2.S1_a_at	A	A1TS	POPTR_0008s11430	POPTR_0008s11430 (11)	scaffold_8:7259571-7260232(+) (11)	NA	Q95245	Cytochrome b561	AT5G38630.1	cytochrome B561-1 	LOC_Os08g29520.1	"cytochrome b561, putative, expressed"	AC235674_2.2	Cytochrome b561 / ferric reductase transmembrane AC235674.1 14925-10160 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.46503.1.A1_at	A	A1TS	POPTR_0014s04010	POPTR_0014s04010 (11)	scaffold_14:3189147-3189872(+) (11)	NA	Q8L4Y2	Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4	AT1G75020.2	lysophosphatidyl acyltransferase 4 	LOC_Os01g57360.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.4652.1.S1_at	A	A1TS	POPTR_0006s12300	POPTR_0006s12300 (10)	scaffold_6:9473439-9474195(+) (10)	NA	Q8L850	Phosphatidylinositol-4-phosphate 5-kinase 9	AT3G09920.3	phosphatidyl inositol monophosphate 5 kinase 	LOC_Os02g57660.2	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g137550.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.46521.1.S1_s_at	A	A1TS	POPTR_0016s02030	POPTR_0016s02030 (11)	scaffold_16:967052-967176(-) (11)	NA	Q9FHZ1	Scarecrow-like protein 23	AT5G41920.1	GRAS family transcription factor 	LOC_Os07g38030.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g103580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46526.1.S1_at	A	A1TS	POPTR_0004s18860	POPTR_0004s18860 (11)	scaffold_4:18601197-18601566(+) (11)	NA	Q9FIW5	Putative NAC domain-containing protein 94	AT2G17040.1	NAC domain containing protein 36 	LOC_Os03g04070.1	"no apical meristem protein, putative, expressed"	Medtr4g103530.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.46527.1.S1_at	A	A1TS	POPTR_0008s15160	POPTR_0008s15160 (11)	scaffold_8:10142306-10143130(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g38470.1	expressed protein	Medtr5g006290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46531.1.A1_a_at	A	A1TS	POPTR_0008s20160	POPTR_0008s20160 (9)	scaffold_8:13954573-13954605(+) (9)	NA	Q8S9G8	Squamosa promoter-binding-like protein 7	AT5G18830.1	squamosa promoter binding protein-like 7 	LOC_Os05g33810.1	"OsSPL9 - SBP-box gene family member, expressed"	Medtr2g025690.1	SBP 	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0046872|metal ion binding	GO:0005634|nucleus
PtpAffx.46537.1.S1_s_at	A	A1TS	POPTR_0013s07140	POPTR_0013s07140 (11)	scaffold_13:5860818-5861507(-) (11)	NA	P37545	Uncharacterized deoxyribonuclease yabD	AT5G17570.1	TatD related DNase 	LOC_Os04g48820.2	"deoxyribonuclease tatD, putative, expressed"	NA	NA	NA	"GO:0016888|""endodeoxyribonuclease activity, producing 5'-phosphomonoesters"""	NA
PtpAffx.46582.1.S1_at	A	A1TS	POPTR_0009s16010	POPTR_0009s16010 (10)	scaffold_9:12257870-12258391(+) (10)	NA	Q9ZVC9	Protein FAR1-RELATED SEQUENCE 3	AT2G27110.2	FAR1-related sequence 3 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr3g111200.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.466.1.S1_at	A	A1TS	POPTR_0015s15290	POPTR_0015s15290 (11)	scaffold_15:14619567-14619924(-) (11)	NA	Q39732	"Glycine cleavage system H protein, mitochondrial"	AT2G35120.1	Single hybrid motif superfamily protein 	LOC_Os02g07410.1	"glycine cleavage system H protein, putative, expressed"	Medtr4g114460.1	Glycine cleavage H-protein 	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
PtpAffx.466.2.A1_at	A	A1TS	POPTR_0012s14960	POPTR_0012s14960 (11)	scaffold_12:14649961-14650201(-) (11)	NA	Q39732	"Glycine cleavage system H protein, mitochondrial"	AT2G35120.1	Single hybrid motif superfamily protein 	LOC_Os02g07410.1	"glycine cleavage system H protein, putative, expressed"	Medtr4g114460.1	Glycine cleavage H-protein 	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
PtpAffx.466.3.S1_at	A	A1MS	POPTR_0015s15290	POPTR_0015s15290 (10)	scaffold_15:14621870-14622103(-) (10)	NA	Q39732	"Glycine cleavage system H protein, mitochondrial"	AT2G35120.1	Single hybrid motif superfamily protein 	LOC_Os02g07410.1	"glycine cleavage system H protein, putative, expressed"	Medtr4g114460.1	Glycine cleavage H-protein 	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
PtpAffx.46613.1.S1_s_at	A	A1TS	POPTR_0001s41660	POPTR_0001s41660 (11)	scaffold_1:41367820-41369887(+) (11)	NA	NA	NA	AT4G27390.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g42280.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46615.1.S1_at	A	A1TS	POPTR_0001s24560	POPTR_0001s24560 (11)	scaffold_1:23815987-23816415(-) (11)	NA	P27880	18.2 kDa class I heat shock protein	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46618.1.S1_a_at	A	A1TS	POPTR_0016s14280	POPTR_0016s14280 (10)	scaffold_16:13542266-13542507(+) (10)	NA	Q42642	Non-specific lipid-transfer protein B	AT2G38540.1	lipid transfer protein 1 	LOC_Os11g24070.1	"LTPL10 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46654.1.S1_at	A	A1TS	POPTR_0005s25060	POPTR_0005s25060 (11)	scaffold_5:23410528-23410586(+) (11)	NA	Q54JC2	Uncharacterized protein DDB_G0288155	AT1G19580.1	gamma carbonic anhydrase 1 	LOC_Os12g07220.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
PtpAffx.46665.1.S1_s_at	A	A1TS	POPTR_0002s02420	POPTR_0002s02420 (11)	scaffold_2:1368410-1368630(+) (11)	NA	Q93X17	Snakin-2	AT1G75750.2	GAST1 protein homolog 1 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr3g156410.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4667.1.S1_a_at	A	A1TS	POPTR_0016s07160	POPTR_0016s07160 (11)	scaffold_16:4993428-4994369(-) (11)	NA	Q9FNH4	"Nudix hydrolase 27, chloroplastic"	AT5G06340.1	nudix hydrolase homolog 27 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.46673.1.S1_at	A	A1TS	POPTR_0015s08590	POPTR_0015s08590 (11)	scaffold_15:9902952-9903713(+) (11)	NA	O64411	Polyamine oxidase	AT5G13700.1	polyamine oxidase 1 	LOC_Os09g20284.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g039870.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.46673.2.S1_at	A	A1TS	POPTR_0002s03400	POPTR_0002s03400 (11)	scaffold_2:2110306-2111724(+) (11)	NA	P24280	SEC14 cytosolic factor	AT2G21520.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g04020.1	expressed protein	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46681.1.S1_at	A	A1TS	POPTR_0008s11770	POPTR_0008s11770 (9)	scaffold_8:7534812-7535872(-) (9)	NA	P54243	"Glucose-6-phosphate isomerase, cytosolic"	AT5G42740.1	Sugar isomerase (SIS) family protein 	LOC_Os03g56460.2	"glucose-6-phosphate isomerase, putative, expressed"	Medtr6g009990.1	Phosphoglucose isomerase (PGI) 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006096|glycolysis||GO:0006094|gluconeogenesis	GO:0004347|glucose-6-phosphate isomerase activity	NA
PtpAffx.46686.1.S1_s_at	A	A1TS	POPTR_0018s06210	POPTR_0018s06210 (11)	scaffold_18:5937435-5938464(+) (11)	NA	P53383	Protein mrp homolog	AT3G24430.1	ATP binding 	LOC_Os01g52170.1	expressed protein	Medtr6g102220.1	Mrp 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
PtpAffx.4669.1.S1_at	A	A1TS	POPTR_0008s00350	POPTR_0008s00350 (11)	scaffold_8:121170-121379(+) (11)	NA	P34899	"Serine hydroxymethyltransferase, mitochondrial"	AT4G37930.1	serine transhydroxymethyltransferase 1 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.467.1.S1_s_at	A	A1TS	POPTR_0016s04040	POPTR_0016s04040 (11)	scaffold_16:2296186-2296595(-) (11)	NA	Q9SS31	Probable calcium-binding protein CML36	AT3G10190.1	Calcium-binding EF-hand family protein 	LOC_Os01g72100.1	"OsCML10 - Calmodulin-related calcium sensor protein, expressed"	Medtr7g107490.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4670.1.A1_at	A	A1TS	POPTR_0018s05280	POPTR_0018s05280 (11)	scaffold_18:4795105-4795597(-) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT1G55110.1	indeterminate(ID)-domain 7 	LOC_Os01g09850.3	"ZOS1-04 - C2H2 zinc finger protein, expressed"	Medtr8g018830.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.46725.2.S1_s_at	A	A1TS	POPTR_0016s10110	POPTR_0016s10110 (11)	scaffold_16:8266341-8266404(+) (11)	NA	NA	NA	AT3G53990.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os05g37970.3	"universal stress protein domain containing protein, putative, expressed"	Medtr7g071220.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.46728.1.S1_at	A	A1TS	POPTR_0004s06400	POPTR_0004s06400 (11)	scaffold_4:5143298-5144235(-) (11)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT4G18360.1	Aldolase-type TIM barrel family protein 	LOC_Os07g05820.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.46770.1.S1_at	A	A1TS	POPTR_0003s11340	POPTR_0003s11340 (11)	scaffold_3:12178955-12179255(+) (11)	NA	NA	NA	AT1G62790.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g47200.2	"LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106370.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46789.1.S1_at	A	A1TS	POPTR_0010s18150	POPTR_0010s18150 (11)	scaffold_10:16511466-16511876(+) (11)	NA	Q9WTN6	Solute carrier family 22 member 21	AT1G79360.1	organic cation/carnitine transporter 2 	LOC_Os07g37510.1	"organic cation transporter-related, putative"	Medtr4g031840.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46804.1.S1_s_at	A	A1TS	POPTR_0002s25290	POPTR_0002s25290 (11)	scaffold_2:22411115-22412837(+) (11)	NA	Q9FKI0	Fimbrin-like protein 2	AT5G48460.1	Actin binding Calponin homology (CH) domain-containing protein 	LOC_Os02g48740.1	"fimbrin-like protein 2, putative, expressed"	Medtr8g011900.1	"Actin-binding, actinin-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46815.1.S1_at	A	A1MS	POPTR_0017s12470	POPTR_0017s12470 (11)	scaffold_17:12632949-12633576(-) (11)	NA	P42738	"Chorismate mutase, chloroplastic"	AT3G29200.1	chorismate mutase 1 	LOC_Os01g55870.1	"chorismate mutase, chloroplast precursor, putative, expressed"	Medtr1g016760.1	Chorismate mutase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004106|chorismate mutase activity	NA
PtpAffx.46815.2.S1_a_at	A	A1TS	POPTR_0017s12470	POPTR_0017s12470 (11)	scaffold_17:12635726-12635936(-) (11)	NA	P42738	"Chorismate mutase, chloroplastic"	AT3G29200.1	chorismate mutase 1 	LOC_Os01g55870.1	"chorismate mutase, chloroplast precursor, putative, expressed"	Medtr1g016760.1	Chorismate mutase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004106|chorismate mutase activity	NA
PtpAffx.4682.1.S1_at	A	A1TS	POPTR_0003s16980	POPTR_0003s16980 (10)	scaffold_3:16472157-16472549(-) (10)	NA	Q9FZK1	F-box only protein 6	AT1G27340.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g69940.1	"OsFBX32 - F-box domain containing protein, expressed"	Medtr3g104000.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46832.1.S1_at	A	A1TS	POPTR_0001s03640	POPTR_0001s03640 (11)	scaffold_1:2895427-2895938(-) (11)	NA	Q9AKH1	2Fe-2S ferredoxin	AT4G21090.3	MITOCHONDRIAL  FERREDOXIN 2 	LOC_Os07g01930.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr8g146410.1	Ferredoxin 	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.46832.2.S1_a_at	A	A2TS	POPTR_0001s03640	POPTR_0003s18050 (11)//POPTR_0001s03640 (11)	scaffold_1:2895837-2896557(-) (11)//scaffold_3:17258780-17259506(+) (11)	NA	Q9AKH1	2Fe-2S ferredoxin	AT4G21090.3	MITOCHONDRIAL  FERREDOXIN 2 	LOC_Os07g01930.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr8g146410.1	Ferredoxin 	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.46833.1.S1_at	A	A1TS	POPTR_0016s14390	POPTR_0016s14390 (11)	scaffold_16:13613975-13614017(+) (11)	NA	NA	NA	AT3G51580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). 	NA	NA	Medtr7g080400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46833.1.S1_s_at	A	A1TS	POPTR_0016s14390	POPTR_0016s14390 (11)	scaffold_16:13614018-13614112(+) (11)	NA	NA	NA	AT3G51580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). 	NA	NA	Medtr7g080400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4685.2.S1_a_at	A	A1TS	POPTR_0019s08320	POPTR_0019s08320 (10)	scaffold_19:9799176-9799672(-) (10)	NA	Q9LSK9	Uncharacterized protein At5g65660	AT5G65660.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr5g032250.1	"hydroxyproline-rich glycoprotein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4686.1.A1_at	A	A1TS	POPTR_0006s16050	POPTR_0006s16050 (11)	scaffold_6:13876925-13878017(+) (11)	NA	Q9T0K7	3-hydroxyisobutyryl-CoA hydrolase-like protein 3	AT4G13360.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os06g39344.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr4g158540.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.4687.1.S1_s_at	A	A1TS	POPTR_0012s07270	POPTR_0012s07270 (11)	scaffold_12:8106115-8106656(+) (11)	NA	Q02283	Homeobox-leucine zipper protein HAT5	AT3G01470.1	homeobox 1 	LOC_Os09g29460.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g113090.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.4687.2.S1_s_at	A	A2TS	POPTR_0012s07270	POPTR_0015s07640 (11)//POPTR_0012s07270 (11)	scaffold_12:8104595-8104924(+) (11)//scaffold_15:8940573-8940901(+) (11)	NA	Q02283	Homeobox-leucine zipper protein HAT5	AT3G01470.1	homeobox 1 	LOC_Os09g29460.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g113090.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.46902.1.A1_at	A	A1TS	POPTR_0012s08660	POPTR_0012s08660 (11)	scaffold_12:9771328-9772768(-) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT5G47740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os06g18820.1	"serine threonine kinase, putative, expressed"	AC233669_2.1	hypothetical protein AC233669.2 8999-10267 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46918.1.S1_at	A	A1TS	POPTR_0005s15130	POPTR_0005s15130 (11)	scaffold_5:11927745-11928381(-) (11)	NA	NA	NA	AT1G72690.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17490.1); Has 59 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g19910.1	expressed protein	Medtr8g021000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46924.1.S1_at	A	A1TS	POPTR_0010s21630	POPTR_0010s21630 (10)	scaffold_10:18832668-18833383(+) (10)	NA	Q6J163	Auxin-induced protein 5NG4	AT2G39510.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr7g118460.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.46928.1.A1_at	A	A1TS	POPTR_0006s04690	POPTR_0006s04690 (11)	scaffold_6:3225258-3225735(-) (11)	NA	B5DGI7	RNA-binding protein 8A	AT1G51510.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os05g04850.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g008930.1	"RNA-binding protein 8A, putative "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.4693.1.A1_at	A	A1TS	POPTR_0005s21360	POPTR_0005s21360 (11)	scaffold_5:20466275-20467313(+) (11)	NA	P46276	"Fructose-1,6-bisphosphatase, cytosolic"	AT1G43670.1	Inositol monophosphatase family protein 	LOC_Os01g64660.2	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.46940.1.S1_at	A	A1TS	POPTR_0006s01560	POPTR_0006s01560 (11)	scaffold_6:951288-951689(+) (11)	NA	Q41916	Cysteine proteinase inhibitor 5	AT5G47550.1	Cystatin/monellin superfamily protein 	LOC_Os03g31510.1	"cysteine proteinase inhibitor 8 precursor, putative, expressed"	Medtr2g030120.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.46971.1.S1_at	A	A1TS	POPTR_0010s26170	POPTR_0010s26170 (11)	scaffold_10:21495265-21496119(+) (11)	NA	Q42656	Alpha-galactosidase	AT5G08380.1	alpha-galactosidase 1 	LOC_Os10g35070.1	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47019.1.A1_at	A	A1MS	POPTR_0018s01030	POPTR_0018s01030 (11)	scaffold_18:935206-935742(-) (11)	NA	NA	NA	AT4G32620.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os01g08430.1	expressed protein	Medtr1g117100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47027.2.A1_s_at	A	A2TS	POPTR_0016s14680	POPTR_0344s00210 (11)//POPTR_0016s14680 (11)	scaffold_16:13837128-13838773(+) (11)//scaffold_344:15983-17681(-) (11)	NA	Q7X9V3	Acetyltransferase NSI	AT1G32070.3	nuclear shuttle interacting 	LOC_Os05g40260.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g080510.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.47044.1.S1_at	A	A1TS	POPTR_0003s01620	POPTR_0003s01620 (9)	scaffold_3:1487483-1487732(-) (9)	NA	NA	NA	AT1G68140.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.2	expressed protein	AC233560_2.1	Protein of unknown function DUF1644 AC233560.2 3733-2305 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47049.1.A1_s_at	A	A1TS	POPTR_0018s01630	POPTR_0018s01630 (11)	scaffold_18:1517823-1518535(+) (11)	NA	NA	NA	AT3G47650.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os06g22690.1	"bundle sheath defective protein 2, putative, expressed"	Medtr3g136830.1	"Chaperon P13.9, putative "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.4706.2.S1_a_at	A	A1TS	POPTR_0003s05400	POPTR_0003s05400 (11)	scaffold_3:6668693-6670075(-) (11)	NA	NA	NA	AT1G52343.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g44132.2	expressed protein	Medtr4g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47066.1.S1_at	A	A1TS	POPTR_0004s16350	POPTR_0004s16350 (11)	scaffold_4:16835971-16836635(-) (11)	NA	NA	NA	AT2G21620.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g47650.1	"universal stress protein domain containing protein, putative, expressed"	Medtr3g162380.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.47069.1.A1_at	A	A1TS	POPTR_0013s03900	POPTR_0013s03900 (11)	scaffold_13:2555589-2556380(+) (11)	NA	P02877	Pro-hevein	AT3G04720.1	pathogenesis-related 4 	LOC_Os11g37950.1	"WIP3 - Wound-induced protein precursor, expressed"	Medtr6g027840.1	"Glycoside hydrolase, family 19; Barwin-related endoglucanase "	GO:0050832|defense response to fungus||GO:0042742|defense response to bacterium	GO:0008061|chitin binding	NA
PtpAffx.47082.1.S1_at	A	A1TS	POPTR_0001s11320	POPTR_0001s11320 (11)	scaffold_1:8762784-8763840(-) (11)	NA	P09379	GTPase-activating protein GYP7	AT5G41940.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.47105.1.S1_at	A	A1TS	POPTR_0008s02900	POPTR_0008s02900 (10)	scaffold_8:1483353-1483424(-) (10)	NA	Q9Y169	Exostosin-2	AT5G04500.1	glycosyltransferase family protein 47 	LOC_Os05g46260.1	"exostosin, putative, expressed"	Medtr5g089480.1	"EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "	GO:0055114|oxidation reduction	"GO:0009496|plastoquinol-plastocyanin reductase activity||GO:0016758|""transferase activity, transferring hexosyl groups""||GO:0051537|""2 iron, 2 sulfur cluster binding"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum||GO:0042651|thylakoid membrane
PtpAffx.4711.3.S1_a_at	A	A1MS	POPTR_0006s27560	POPTR_0006s27560 (11)	scaffold_6:25412851-25413170(-) (11)	NA	P48000	Homeobox protein knotted-1-like 3	AT5G25220.1	KNOTTED1-like homeobox gene 3 	LOC_Os08g19650.1	"homeobox protein knotted-1, putative, expressed"	Medtr3g137900.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.47112.1.S1_at	A	A1TS	POPTR_0017s10920	POPTR_0017s10920 (11)	scaffold_17:10505179-10505493(+) (11)	NA	Q9SSA5	"Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic"	AT3G01480.2	cyclophilin 38 	LOC_Os08g29370.2	"peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.47122.1.S1_a_at	A	A1TS	POPTR_0001s09630	POPTR_0001s09630 (11)	scaffold_1:7336785-7337190(-) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G41350.1	RING/U-box superfamily protein 	LOC_Os11g18947.2	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_12.1	"Zinc finger, RING-type AC235567.1 46372-52293 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47122.2.S1_a_at	A	A1TS	POPTR_0001s09630	POPTR_0001s09630 (11)	scaffold_1:7337617-7338276(-) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G41350.1	RING/U-box superfamily protein 	LOC_Os11g18947.2	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_12.1	"Zinc finger, RING-type AC235567.1 46372-52293 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47157.1.S1_a_at	A	A1TA	POPTR_0004s09040	POPTR_0004s09040 (11)	scaffold_4:7591129-7591339(+) (11)//scaffold_4:7596390-7596600(+) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.47182.1.S1_at	A	A1TS	POPTR_0001s09310	POPTR_0001s09310 (9)	scaffold_1:7108564-7109827(-) (9)	NA	A4XKC6	Putative Holliday junction resolvase	AT3G52905.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g55900.1	"holliday junction resolvase, putative, expressed"	Medtr5g010410.1	Holliday junction resolvase YqgF 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity||GO:0000150|recombinase activity	NA
PtpAffx.47196.1.A1_at	A	A1TS	POPTR_0011s16660	POPTR_0011s16660 (9)	scaffold_11:18455901-18456154(-) (9)	NA	C0LGQ9	Probable LRR receptor-like serine/threonine-protein kinase At4g20940	AT4G20940.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g05190.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g129810.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.47198.1.S1_at	A	A1TS	POPTR_0009s13730	POPTR_0009s13730 (10)	scaffold_9:10893908-10894432(+) (10)	NA	NA	NA	AT4G35040.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os06g50310.1	"E2F-related protein, putative, expressed"	Medtr4g098490.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.4721.1.A1_at	A	A1TS	POPTR_0008s09090	POPTR_0008s09090 (10)	scaffold_8:5634903-5636896(-) (10)	NA	Q54ND3	Protein UXT homolog	AT1G26660.1	Prefoldin chaperone subunit family protein 	LOC_Os07g40460.1	"prefoldin, putative, expressed"	Medtr5g045610.1	"Prefoldin related, ubiquitously expressed transcript "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.47213.1.S1_at	A	A1TS	POPTR_0003s13860	POPTR_0003s13860 (11)	scaffold_3:14108219-14108805(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g12110.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47214.2.S1_at	A	A1TS	POPTR_0012s09630	POPTR_0012s09630 (11)	scaffold_12:10604125-10604479(+) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.47214.3.S1_a_at	A	A2TS	POPTR_0012s09630	POPTR_0012s09630 (11)//POPTR_0015s10410 (10)	scaffold_12:10602567-10602607(+) (11)//scaffold_15:11357497-11357535(+) (10)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.47237.2.A1_a_at	A	A1TS	POPTR_0001s18200	POPTR_0001s18200 (11)	scaffold_1:15273811-15274393(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g008940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47237.3.S1_a_at	A	A2TS	POPTR_0001s18200	POPTR_0003s05290 (11)//POPTR_0001s18200 (11)	scaffold_1:15274265-15274302(-) (11)//scaffold_3:6525503-6525540(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g008940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47262.1.S1_at	A	A1MS	POPTR_0014s11340	POPTR_0014s11340 (11)	scaffold_14:8438262-8438411(-) (11)	NA	NA	NA	AT3G62330.1	Zinc knuckle (CCHC-type) family protein 	LOC_Os01g14920.1	"zinc knuckle family protein, putative, expressed"	Medtr7g133280.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.47262.1.S1_s_at	A	A1TS	POPTR_0014s11340	POPTR_0014s11340 (11)	scaffold_14:8438400-8438821(-) (11)	POPTR_0002s19370 (6)	NA	NA	AT3G62330.1	Zinc knuckle (CCHC-type) family protein 	LOC_Os01g14920.1	"zinc knuckle family protein, putative, expressed"	Medtr7g133280.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.4727.1.A1_at	A	A1TS	POPTR_0017s07800	POPTR_0017s07800 (11)	scaffold_17:6074151-6074949(+) (11)	NA	Q941R6	MLP-like protein 31	AT1G70840.1	MLP-like protein 31 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g012990.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.47270.1.A1_at	A	A1TS	POPTR_0007s13300	POPTR_0007s13300 (10)	scaffold_7:13426578-13426618(+) (10)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT5G17760.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr5g020890.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.47285.1.S1_s_at	A	A1TS	POPTR_0004s21730	POPTR_0004s21730 (11)	scaffold_4:20767294-20767745(-) (11)	NA	NA	NA	AT4G35320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g40060.1	expressed protein	Medtr5g106850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47307.1.A1_at	A	A1TS	POPTR_0007s07830	POPTR_0007s07830 (11)	scaffold_7:6270393-6270828(+) (11)	NA	Q8LCG7	Nuclear transcription factor Y subunit C-2	AT1G56170.2	"nuclear factor Y, subunit C2 "	LOC_Os02g07450.2	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr7g139450.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.47316.2.S1_s_at	A	A1TS	POPTR_0014s01640	POPTR_0014s01640 (11)	scaffold_14:1530531-1531325(+) (11)	NA	Q5BIM8	DNA excision repair protein ERCC-8	AT1G27840.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g20430.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47320.1.S1_at	A	A1TS	POPTR_0016s11730	POPTR_0016s11730 (10)	scaffold_16:10913110-10913461(+) (10)	NA	Q304B9	Neutral ceramidase	AT2G38010.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4733.3.S1_at	A	A1TS	POPTR_0009s11140	POPTR_0009s11140 (11)	scaffold_9:9349830-9350257(-) (11)	NA	NA	NA	AT2G15890.1	maternal effect embryo arrest 14 	LOC_Os03g55670.1	expressed protein	Medtr4g128720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4733.4.A1_at	A	A1TS	POPTR_0003s16010	POPTR_0003s16010 (11)	scaffold_3:15646770-15647212(+) (11)	NA	P93846	Obtusifoliol 14-alpha demethylase	AT1G11680.1	CYTOCHROME P450 51G1 	LOC_Os11g32240.1	"cytochrome P450 51, putative, expressed"	Medtr8g006220.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.4733.7.S1_s_at	A	A1TS	POPTR_0004s08380	POPTR_0004s08380 (11)	scaffold_4:6915250-6915807(+) (11)	NA	P51118	Glutamine synthetase cytosolic isozyme 1	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
PtpAffx.47337.1.A1_at	A	A1TS	POPTR_0012s06780	POPTR_0012s06780 (11)	scaffold_12:7256795-7258534(-) (11)	NA	Q39017	Diacylglycerol kinase 1	AT5G07920.1	diacylglycerol kinase1 	LOC_Os03g31180.1	"diacylglycerol kinase 1, putative, expressed"	Medtr4g144130.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region; Protein kinase C, phorbol ester/diacylglycerol binding "	GO:0023033|signaling pathway||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.47344.1.S1_at	A	A1TS	POPTR_0004s24450	POPTR_0004s24450 (10)	scaffold_4:23114678-23114862(-) (10)	NA	Q9C6W5	ABC transporter G family member 14	AT1G31770.1	ATP-binding cassette 14 	LOC_Os03g06139.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.47353.1.S1_at	A	A1MS	POPTR_0001s47620	POPTR_0001s47620 (11)	scaffold_1:47767977-47768497(-) (11)	NA	Q9FH16	PRA1 family protein G2	AT5G56230.1	prenylated RAB acceptor 1.G2 	LOC_Os01g61170.1	"prenylated rab acceptor, putative"	Medtr6g092540.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4736.1.A1_s_at	A	A1TS	POPTR_0009s04580	POPTR_0009s04580 (9)	scaffold_9:4899342-4899626(+) (9)	NA	NA	NA	AT4G37300.1	maternal effect embryo arrest 59 	LOC_Os03g15920.1	expressed protein	Medtr5g016400.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4736.2.A1_a_at	A	A1TS	POPTR_0009s04580	POPTR_0009s04580 (11)	scaffold_9:4899707-4899745(+) (11)	NA	NA	NA	AT4G37300.1	maternal effect embryo arrest 59 	LOC_Os03g15920.1	expressed protein	Medtr5g016400.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47361.1.S1_at	A	A1TS	POPTR_0013s04030	POPTR_0013s04030 (11)	scaffold_13:2664760-2665095(+) (11)	NA	P57722	Poly(rC)-binding protein 3	AT3G04610.1	RNA-binding KH domain-containing protein 	LOC_Os03g42900.1	"KH domain containing protein, putative, expressed"	Medtr8g129730.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.47362.1.S1_at	A	A1TS	POPTR_0007s10310	POPTR_0007s10310 (11)	scaffold_7:10137403-10139838(-) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os07g40270.1	"frigida, putative, expressed"	Medtr8g099150.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47362.2.S1_a_at	A	A1TA	POPTR_0013s11380	POPTR_0013s11380 (11)	scaffold_13:12054368-12054646(+) (11)	POPTR_0015s12840 (6)	Q42538	Serine acetyltransferase 5	AT5G56760.1	serine acetyltransferase 1;1 	LOC_Os05g45710.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g103050.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
PtpAffx.47384.1.S1_a_at	A	A2TS	POPTR_0001s32650	POPTR_0001s32650 (11)//POPTR_0017s08520 (11)	scaffold_1:30932137-30932175(+) (11)//scaffold_17:7096765-7096803(+) (11)	NA	Q9SDN0	"Chaperone protein dnaJ 20, chloroplastic"	AT4G13830.2	DNAJ-like 20 	LOC_Os01g01160.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g079820.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Heat shock protein DnaJ, N-terminal; Cellular retinaldehyde-binding/triple function, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.47384.1.S1_at	A	A1TS	POPTR_0001s32650	POPTR_0001s32650 (10)	scaffold_1:30932077-30933321(+) (10)	NA	Q9SDN0	"Chaperone protein dnaJ 20, chloroplastic"	AT4G13830.2	DNAJ-like 20 	LOC_Os01g01160.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g079820.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Heat shock protein DnaJ, N-terminal; Cellular retinaldehyde-binding/triple function, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.47384.2.S1_at	A	A1TS	POPTR_0017s08520	POPTR_0017s08520 (11)	scaffold_17:7096518-7097810(+) (11)	NA	Q9SDN0	"Chaperone protein dnaJ 20, chloroplastic"	AT4G13830.2	DNAJ-like 20 	LOC_Os01g01160.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g079820.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Heat shock protein DnaJ, N-terminal; Cellular retinaldehyde-binding/triple function, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.47391.1.S1_s_at	A	A1TS	POPTR_0001s35150	POPTR_0001s35150 (11)	scaffold_1:33403299-33404837(-) (11)	NA	Q9LYJ9	DEAD-box ATP-dependent RNA helicase 46	AT5G14610.2	DEAD box RNA helicase family protein 	LOC_Os01g07740.3	"DEAD-box ATP-dependent RNA helicase 14, putative, expressed"	Medtr6g005450.1	"WW/Rsp5/WWP; Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.47432.1.S1_s_at	A	A1TS	POPTR_0001s22630	POPTR_0001s22630 (11)	scaffold_1:21526743-21527448(+) (11)	NA	Q9FMR3	NAC domain-containing protein 90	AT3G44350.2	NAC domain containing protein 61 	LOC_Os05g37080.1	"No apical meristem protein, putative, expressed"	Medtr2g107600.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.4744.1.A1_at	A	A1TS	POPTR_0067s00210	POPTR_0067s00210 (11)	scaffold_67:12998-15256(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os04g52640.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr5g091330.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.47441.1.S1_at	A	A1TS	POPTR_0005s02090	POPTR_0005s02090 (10)	scaffold_5:1351573-1352395(-) (11)	NA	Q9P1Y6	PHD and RING finger domain-containing protein 1	AT3G05670.1	RING/U-box protein 	LOC_Os03g19020.3	"PHD-finger family protein, expressed"	Medtr7g138060.1	"Zinc finger, RING-type; Zinc finger, P11-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.47448.1.S1_a_at	A	A2TS	POPTR_0015s15530	POPTR_0015s15530 (10)//POPTR_0015s15660 (10)	scaffold_15:14785076-14785195(+) (10)//scaffold_15:14897984-14898103(+) (10)	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	NA	NA	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47448.2.A1_at	A	A1TS	POPTR_0015s15660	POPTR_0015s15660 (10)	scaffold_15:14898024-14898198(+) (10)	POPTR_0015s15530 (7)	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4746.2.A1_a_at	A	A1TS	POPTR_0001s33420	POPTR_0001s33420 (11)	scaffold_1:31611565-31612204(-) (11)	NA	Q9LSD6	Actin-related protein 2	AT3G27000.1	actin related protein 2 	LOC_Os08g28190.1	"actin, putative, expressed"	Medtr2g008170.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.47475.1.S1_at	A	A1TS	POPTR_0013s11070	POPTR_0013s11070 (10)	scaffold_13:11740183-11740674(-) (10)	NA	Q56ZI2	Patellin-2	AT1G22530.1	PATELLIN 2 	LOC_Os05g35460.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47475.1.S1_s_at	A	A1TS	POPTR_0013s11070	POPTR_0013s11070 (10)	scaffold_13:11740212-11740510(-) (10)	NA	Q56ZI2	Patellin-2	AT1G22530.1	PATELLIN 2 	LOC_Os05g35460.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47479.1.A1_at	A	A1TS	POPTR_0017s01740	POPTR_0017s01740 (11)	scaffold_17:1265607-1266109(-) (11)	NA	NA	NA	AT3G02700.1	NC domain-containing protein-related 	LOC_Os05g24560.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47488.1.S1_s_at	A	A1TS	POPTR_0019s10830	POPTR_0019s10830 (11)	scaffold_19:12328239-12328787(-) (11)	NA	Q9M0R2	Patellin-5	AT4G09160.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47500.1.A1_at	A	A1TS	POPTR_0005s21350	POPTR_0005s21350 (11)	scaffold_5:20445123-20445587(-) (11)	NA	Q9CV28	Protein FAM188A	AT1G43690.1	ubiquitin interaction motif-containing protein 	LOC_Os04g34440.1	"ubiquitin interaction motif-containing protein, putative, expressed"	Medtr1g125350.1	Ubiquitin interacting motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47505.1.A1_at	A	A1MS	POPTR_0005s07940	POPTR_0005s07940 (10)	scaffold_5:5480896-5482007(-) (10)	NA	NA	NA	AT4G39790.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g07980.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr4g140290.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47514.1.S1_s_at	A	A1TS	POPTR_0010s00730	POPTR_0010s00730 (11)	scaffold_10:431784-433447(+) (11)	NA	Q8GUG7	DEAD-box ATP-dependent RNA helicase 50	AT3G06980.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g01830.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g163690.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.47520.1.S1_at	A	A1TS	POPTR_0016s00280	POPTR_0016s00280 (11)	scaffold_16:33990-34496(-) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT1G55680.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr2g033600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47522.1.S1_at	A	A1TS	POPTR_0014s04820	POPTR_0014s04820 (11)	scaffold_14:3733700-3733994(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g41880.1	"hyaluronan/mRNA binding family domain containing protein, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47522.2.S1_a_at	A	A1TS	POPTR_0014s04820	POPTR_0014s04820 (11)	scaffold_14:3732918-3734043(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g41880.1	"hyaluronan/mRNA binding family domain containing protein, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47524.1.S1_at	A	A1TS	POPTR_0007s01030	POPTR_0007s01030 (11)	scaffold_7:563497-563764(+) (11)	NA	Q9S7A9	Squamosa promoter-binding-like protein 4	AT1G53160.1	squamosa promoter binding protein-like 4 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr2g017680.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.4760.1.A1_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (9)	scaffold_14:13874209-13874241(+) (9)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.47633.1.S1_s_at	A	A1TS	POPTR_0006s08780	POPTR_0006s08780 (11)	scaffold_6:6459245-6459751(-) (11)	NA	Q9FJD5	Laccase-17	AT5G60020.1	laccase 17 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.47649.1.S1_at	A	A1TS	POPTR_0013s12120	POPTR_0013s12120 (10)	scaffold_13:12770778-12771859(-) (10)	NA	Q7YR70	Angio-associated migratory cell protein	AT1G71840.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g48090.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g134960.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47668.1.A1_at	A	A1TS	POPTR_0014s02300	POPTR_0014s02300 (11)	scaffold_14:1947545-1948080(-) (11)	NA	Q8GXG1	Probable isoaspartyl peptidase/L-asparaginase 2	AT3G16150.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os04g55710.1	"transposon protein, putative, unclassified, expressed"	Medtr1g023790.1	"Peptidase T2, asparaginase 2 "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.4767.1.A1_s_at	A	A1TS	POPTR_0003s09010	POPTR_0003s09010 (11)	scaffold_3:10332565-10332764(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT4G17800.1	Predicted AT-hook DNA-binding family protein 	LOC_Os04g50030.1	"DNA binding protein, putative, expressed"	Medtr7g092530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47691.1.A1_at	A	A1TS	POPTR_0005s08140	POPTR_0005s08140 (11)	scaffold_5:5600912-5601198(+) (11)	NA	Q42602	Cytochrome P450 89A2	AT1G64940.1	"cytochrome P450, family 87, subfamily A, polypeptide 6 "	LOC_Os10g36980.1	"transposon protein, putative, unclassified, expressed"	Medtr2g010350.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.47701.1.S1_at	A	A1TS	POPTR_0015s12410	POPTR_0015s12410 (11)	scaffold_15:12665391-12668048(+) (11)	NA	NA	NA	AT5G45170.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os12g43520.1	"cbbY protein-related, putative, expressed"	AC235753_15.1	"HAD-superfamily hydrolase subfamily IA, variant 3 AC235753.1 88087-84841 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47744.1.S1_at	A	A1TS	POPTR_0005s20850	POPTR_0005s20850 (11)	scaffold_5:19989514-19990017(-) (11)	NA	NA	NA	AT4G19950.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 338 Blast hits to 330 proteins in 72 species: Archae - 2; Bacteria - 94; Metazoa - 7; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os08g01590.2	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47750.1.A1_at	A	A1TS	POPTR_0002s20200	POPTR_0002s20200 (11)	scaffold_2:16138278-16138712(+) (11)	NA	Q54FU9	Mitochondrial substrate carrier family protein W	AT2G47490.1	NAD+ transporter 1 	LOC_Os05g28870.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g068050.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47788.1.A1_s_at	A	A1TS	POPTR_0013s14390	POPTR_0013s14390 (11)	scaffold_13:14604140-14604867(-) (11)	NA	Q8VYN2	Vesicle-associated protein 4-2	AT4G21450.1	PapD-like superfamily protein 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.47790.2.S1_s_at	A	A1TS	POPTR_0008s11350	POPTR_0008s11350 (11)	scaffold_8:7189340-7189489(+) (11)	NA	Q9CA40	Nudix hydrolase 1	AT1G68760.1	nudix hydrolase  1 	NA	NA	Medtr5g071730.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.47796.1.S1_s_at	A	A1TS	POPTR_0011s16940	POPTR_0011s16940 (11)	scaffold_11:18648982-18650048(+) (11)	NA	Q84VX0	Probable galactinol--sucrose galactosyltransferase 1	AT1G55740.1	seed imbibition 1 	LOC_Os08g38710.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47808.1.S1_at	A	A1TS	POPTR_0001s37740	POPTR_0001s37740 (11)	scaffold_1:36832673-36833219(+) (11)	NA	Q9LVQ5	Pentatricopeptide repeat-containing protein At5g55840	AT5G55840.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g40690.1	"PPR repeat containing protein, expressed"	Medtr4g089510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47813.1.S1_s_at	A	A1TS	POPTR_0003s12350	POPTR_0003s12350 (11)	scaffold_3:12951965-12952448(+) (11)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT4G11680.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os02g45240.1	"zinc finger family protein, putative, expressed"	Medtr5g010900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47827.1.S1_at	A	A1TS	POPTR_0005s27970	POPTR_0005s27970 (11)	scaffold_5:25386947-25387419(-) (11)	NA	Q54CV5	Probable inactive serine/threonine-protein kinase bub1	AT2G33560.1	BUB1-related (BUB1: budding uninhibited by benzymidazol 1) 	LOC_Os02g10020.1	"Mad3/BUB1 homology region 1 domain containing protein, expressed"	CU179634_19.1	"spindle checkpoint protein-related, putative CU179634.6 79089-74963 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47839.1.A1_at	A	A1TS	POPTR_0013s11840	POPTR_0013s11840 (11)	scaffold_13:12470990-12471417(-) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT1G71900.1	Protein of unknown function (DUF803) 	LOC_Os05g35060.1	"DUF803 domain containing, putative, expressed"	Medtr2g005850.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4784.1.A1_s_at	A	A1TS	POPTR_0003s17680	POPTR_0003s17680 (11)	scaffold_3:16981244-16981667(-) (11)	NA	NA	NA	AT3G24160.1	putative type 1 membrane protein 	LOC_Os08g45220.1	expressed protein	Medtr2g130050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47859.1.A1_at	A	A1TS	POPTR_0006s15570	POPTR_0006s15570 (11)	scaffold_6:12995550-12997619(-) (11)	NA	NA	NA	AT1G55160.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os05g51540.1	expressed protein	AC202568_8.1	Ras GTPase; Calcium-binding EF-hand AC202568.9 36216-39258 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47876.1.S1_s_at	A	A1TS	POPTR_0006s05560	POPTR_0006s05560 (11)	scaffold_6:3931669-3931926(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47876.2.S1_a_at	A	A1TS	POPTR_0006s05570	POPTR_0006s05570 (11)	scaffold_6:3935124-3935233(-) (11)	NA	NA	NA	AT3G57785.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os09g31260.1	expressed protein	Medtr1g071470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47876.2.S1_at	A	A1TS	POPTR_0006s05570	POPTR_0006s05570 (11)	scaffold_6:3934704-3934933(-) (11)	NA	NA	NA	AT3G57785.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os09g31260.1	expressed protein	Medtr1g071470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4788.1.A1_at	A	A1MS	POPTR_0010s24940	POPTR_0010s24940 (11)	scaffold_10:20884694-20885212(+) (11)	NA	Q9FG21	Putative RING-H2 finger protein ATL71	AT5G06490.1	RING/U-box superfamily protein 	LOC_Os07g06560.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g149630.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47887.1.A1_at	A	A1TS	POPTR_0006s08180	POPTR_0006s08180 (11)	scaffold_6:5941816-5942169(-) (11)	NA	NA	NA	AT5G24710.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g46510.1	"peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed"	Medtr7g134460.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47888.1.A1_at	A	A1TS	POPTR_0001s15050	POPTR_0001s15050 (11)	scaffold_1:11893235-11893594(+) (11)	NA	P37216	"Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic"	AT4G33510.1	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 	LOC_Os03g27230.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003849|3-deoxy-7-phosphoheptulonate synthase activity	NA
PtpAffx.479.1.S1_at	A	A1TS	POPTR_0015s09830	POPTR_0015s09830 (11)	scaffold_15:10932491-10933013(+) (11)	NA	Q9M0G7	Leucine-rich repeat receptor-like protein kinase PXL2	AT2G31880.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g18000.1	"protein kinase domain containing protein, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.47904.1.S1_s_at	A	A1TS	POPTR_0016s01110	POPTR_0016s01110 (9)	scaffold_16:454906-455320(+) (11)	NA	Q9LDL7	Scarecrow-like transcription factor PAT1	AT4G17230.1	SCARECROW-like 13 	LOC_Os10g22430.1	"gibberellin response modulator protein, putative, expressed"	Medtr8g148340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47916.1.S1_at	A	A1TS	POPTR_0004s01680	POPTR_0004s01680 (11)	scaffold_4:1013815-1015820(+) (11)	NA	C0LU16	Mediator of RNA polymerase II transcription subunit 21	AT4G04780.1	mediator 21 	LOC_Os08g04150.1	"RNA polymerase II complex component SRB7, putative, expressed"	AC233677_19.1	"RNA polymerase II complex component SRB7, putative AC233677.2 112854-109786 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47974.1.S1_at	A	A1TS	POPTR_0008s06450	POPTR_0008s06450 (10)	scaffold_8:3823578-3823914(+) (10)	NA	Q869R9	Myb-like protein J	AT5G05790.1	Duplicated homeodomain-like superfamily protein 	LOC_Os05g37730.1	"MYB family transcription factor, putative, expressed"	Medtr5g089190.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47989.1.S1_at	A	A1TS	POPTR_0008s23210	POPTR_0008s23210 (10)	scaffold_389:17391-17788(+) (9)//scaffold_8:18520675-18521191(+) (10)	POPTR_0389s00200 (8)	Q8TQR1	Chaperone protein dnaJ	AT3G06778.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g61550.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g124470.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.47998.1.S1_s_at	A	A1TS	POPTR_0016s07170	POPTR_0016s07170 (11)	scaffold_16:5003074-5003633(+) (11)	NA	O54922	Exocyst complex component 7	AT5G52340.1	exocyst subunit exo70 family protein A2 	LOC_Os11g05880.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr1g112310.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.48000.1.S1_at	A	A1TS	POPTR_0012s13560	POPTR_0012s13560 (11)	scaffold_12:13671927-13672714(-) (11)	NA	O24356	Protein MEN-8	AT5G52160.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os09g35700.1	"LTPL45 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr1g129310.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48003.1.S1_at	A	A1MS	POPTR_0002s10970	POPTR_0002s10970 (11)	scaffold_2:8005163-8005557(+) (11)	NA	Q9STV4	CBL-interacting serine/threonine-protein kinase 8	AT4G24400.1	CBL-interacting protein kinase 8 	LOC_Os01g35184.2	"CAMK_KIN1/SNF1/Nim1_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g076080.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.48013.1.S1_a_at	A	A1TS	POPTR_0012s01240	POPTR_0012s01240 (11)	scaffold_12:862188-862364(-) (11)	NA	NA	NA	AT5G53310.1	myosin heavy chain-related 	LOC_Os01g43360.1	"myosin-Ie, putative, expressed"	Medtr3g124750.1	Myosin tail 2 	NA	GO:0003774|motor activity	GO:0016459|myosin complex
PtpAffx.48013.1.S1_at	A	A1TS	POPTR_0012s01240	POPTR_0012s01240 (10)	scaffold_12:862162-864740(-) (10)	NA	NA	NA	AT5G53310.1	myosin heavy chain-related 	LOC_Os01g43360.1	"myosin-Ie, putative, expressed"	Medtr3g124750.1	Myosin tail 2 	NA	GO:0003774|motor activity	GO:0016459|myosin complex
PtpAffx.48013.2.S1_a_at	A	A1TS	POPTR_0012s01240	POPTR_0012s01240 (11)	scaffold_12:862278-862364(-) (11)	NA	NA	NA	AT5G53310.1	myosin heavy chain-related 	LOC_Os01g43360.1	"myosin-Ie, putative, expressed"	Medtr3g124750.1	Myosin tail 2 	NA	GO:0003774|motor activity	GO:0016459|myosin complex
PtpAffx.48017.1.S1_at	A	A1TS	POPTR_0006s15480	POPTR_0006s15480 (10)	scaffold_6:12875008-12875530(+) (10)	NA	Q869R9	Myb-like protein J	AT5G56840.1	myb-like transcription factor family protein 	LOC_Os05g10690.1	"Myb transcription factor, putative, expressed"	Medtr4g160800.1	"Interleukin-6/G-CSF/MGF; Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.48017.2.S1_a_at	A	A1TS	POPTR_0006s15480	POPTR_0006s15480 (11)	scaffold_6:12874306-12874882(+) (11)	NA	Q869R9	Myb-like protein J	AT5G56840.1	myb-like transcription factor family protein 	LOC_Os05g10690.1	"Myb transcription factor, putative, expressed"	Medtr4g160800.1	"Interleukin-6/G-CSF/MGF; Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.48018.1.S1_at	A	A1TS	POPTR_0003s17350	POPTR_0003s17350 (9)	scaffold_3:16727279-16727683(+) (9)	NA	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT2G33170.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g42700.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.48031.1.S1_at	A	A1TS	POPTR_0002s01960	POPTR_0002s01960 (11)	scaffold_2:1047833-1048251(+) (11)	NA	Q43872	Peroxidase 64	AT5G42180.1	Peroxidase superfamily protein 	LOC_Os02g58720.2	"peroxidase precursor, putative, expressed"	Medtr1g031890.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.48035.1.S1_s_at	A	A1TS	POPTR_0018s00860	POPTR_0018s00860 (11)	scaffold_18:786383-787049(-) (11)	NA	Q8TDG4	Helicase POLQ-like	AT4G32700.2	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding 	LOC_Os12g19370.1	"DNA polymerase I family protein, expressed"	Medtr1g009720.1	DNA-directed DNA polymerase; ATP-requiring DNA helicase RecQ; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity||GO:0005524|ATP binding	NA
PtpAffx.48046.1.S1_at	A	A1TS	POPTR_0019s10810	POPTR_0019s10810 (11)	scaffold_19:12306415-12306939(+) (11)	POPTR_0013s11060 (6)	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48049.1.S1_at	A	A1TS	POPTR_0011s11090	POPTR_0011s11090 (9)	scaffold_11:13754742-13754834(-) (9)	NA	NA	NA	AT1G78810.1	unknown protein; Has 75 Blast hits to 52 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os06g06014.4	expressed protein	Medtr2g092130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48055.1.S1_at	A	A1TS	POPTR_0004s09120	POPTR_0004s09120 (10)	scaffold_4:7632074-7632550(-) (10)	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.2	expressed protein	Medtr4g156620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48058.1.S1_s_at	A	A1TS	POPTR_0017s04350	POPTR_0017s04350 (9)	scaffold_17:3368850-3369236(+) (9)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os10g04060.1	"powdery mildew resistance protein PM3b, putative"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.4806.1.S1_at	A	A1TS	POPTR_0007s05010	POPTR_0007s05010 (11)	scaffold_7:3185432-3185946(+) (11)	NA	P46668	Homeobox-leucine zipper protein ATHB-6	AT2G22430.1	homeobox protein 6 	LOC_Os08g37580.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g102220.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.4806.3.S1_a_at	A	A2TS	POPTR_0005s07290	POPTR_0007s05010 (11)//POPTR_0005s07290 (11)	scaffold_5:4938366-4938974(+) (11)//scaffold_7:3184010-3184640(+) (11)	NA	P46668	Homeobox-leucine zipper protein ATHB-6	AT2G22430.1	homeobox protein 6 	LOC_Os09g29460.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g102220.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.48064.1.S1_at	A	A1TS	POPTR_0004s13660	POPTR_0004s13660 (9)	scaffold_4:14008078-14009155(+) (9)	NA	Q9FL33	DNA replication licensing factor MCM3 homolog	AT5G46280.1	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os05g39850.1	"MCM3 - Putative minichromosome maintenance MCM complex subunit 3, expressed"	Medtr4g165910.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.48073.1.S1_at	A	A1TS	POPTR_0008s20510	POPTR_0008s20510 (10)	scaffold_8:14267833-14268198(+) (10)	NA	Q6IQ16	Speckle-type POZ protein-like	AT3G06190.1	BTB-POZ and MATH domain 2 	LOC_Os07g46160.1	"MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.48080.1.A1_at	A	A1TS	POPTR_0013s06040	POPTR_0013s06040 (11)	scaffold_13:4462808-4463308(+) (11)	NA	Q6PDY2	2-aminoethanethiol dioxygenase	AT5G15120.1	Protein of unknown function (DUF1637) 	LOC_Os12g42860.1	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g103170.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.48092.1.S1_at	A	A1TS	POPTR_0011s13960	POPTR_0011s13960 (9)	scaffold_11:16565156-16565509(-) (9)	NA	P87027	Septum-promoting GTP-binding protein 1	AT5G54840.1	Ras-related small GTP-binding family protein 	LOC_Os07g33850.2	"ras-related protein, putative, expressed"	Medtr5g099390.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.4810.1.A1_at	A	A1TS	POPTR_0011s15970	POPTR_0011s15970 (9)	scaffold_11:17966253-17966695(-) (9)	NA	Q8H1S4	1-aminocyclopropane-1-carboxylate oxidase homolog 4	AT1G06650.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g10350.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed"	Medtr8g044630.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.48123.2.A1_at	A	A1TS	POPTR_0001s41980	POPTR_0001s41980 (10)	scaffold_1:41740503-41740915(-) (10)	NA	NA	NA	AT5G54490.1	pinoid-binding protein 1 	LOC_Os06g46950.1	"EF hand family protein, putative, expressed"	Medtr2g011470.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48137.1.S1_at	A	A1MA	POPTR_0014s01020	POPTR_0014s01020 (10)	scaffold_14:965680-966224(+) (10)	NA	NA	NA	NA	NA	LOC_Os05g25060.1	"PPR repeat domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48155.1.S1_at	A	A1TS	POPTR_0017s01730	POPTR_0017s01730 (11)	scaffold_17:1250274-1250654(-) (11)	NA	Q9FYR7	Scarecrow-like protein 8	AT5G52510.1	SCARECROW-like 8 	LOC_Os02g45760.1	"chitin-inducible gibberellin-responsive protein 2, putative, expressed"	AC146793_10.1	GRAS transcription factor AC146793.7 53118-50985 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48163.1.S1_at	A	A1MS	POPTR_0005s12490	POPTR_0005s12490 (11)	scaffold_5:9252140-9252598(-) (11)	NA	Q55CU8	Random slug protein 5	AT1G75170.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g51430.2	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr8g093390.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48163.2.S1_at	A	A1TS	POPTR_0007s12800	POPTR_0007s12800 (10)	scaffold_7:13057607-13058026(+) (10)	NA	Q55CU8	Random slug protein 5	AT1G75170.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g51430.2	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr8g093390.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4817.1.S1_at	A	A1TS	POPTR_0019s11870	POPTR_0019s11870 (11)	scaffold_19:13098345-13098823(+) (11)	NA	Q9S7Y1	Transcription factor bHLH30	AT1G68810.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr4g109590.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.4817.2.A1_at	A	A1TS	POPTR_0013s12190	POPTR_0013s12190 (9)	scaffold_13:12837321-12837709(+) (9)	NA	Q9LET0	Putative transcription factor bHLH107	AT3G56770.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr4g109590.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.48179.1.A1_at	A	A1TS	POPTR_0008s02880	POPTR_0008s02880 (10)	scaffold_8:1465182-1465807(-) (10)	NA	Q07469	Bark storage protein A	AT4G24350.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4818.1.A1_at	A	A1TS	POPTR_0001s32820	POPTR_0001s32820 (10)	scaffold_1:31124179-31124691(+) (11)	NA	Q7XJ98	Xyloglucan galactosyltransferase KATAMARI1	AT4G13990.1	Exostosin family protein 	LOC_Os03g05110.1	"xyloglucan galactosyltransferase KATAMARI1, putative, expressed"	Medtr3g104740.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.48189.1.A1_at	A	A1TS	POPTR_0016s00980	POPTR_0016s00980 (10)	scaffold_16:385103-385604(-) (11)	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr6g009150.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.48196.1.S1_s_at	A	A1TS	POPTR_0003s01340	POPTR_0003s01340 (11)	scaffold_3:1175588-1175679(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4820.1.A1_s_at	A	A1TS	POPTR_0009s09530	POPTR_0009s09530 (11)	scaffold_9:8390256-8391716(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48202.1.A1_at	A	A1TS	POPTR_0016s14790	POPTR_0016s14790 (11)	scaffold_16:13922902-13923304(-) (11)	NA	NA	NA	AT3G08600.1	Protein of unknown function (DUF1191) 	LOC_Os12g02550.1	expressed protein	Medtr7g080660.1	Protein of unknown function DUF1191 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48203.1.A1_a_at	A	A1TS	POPTR_0010s00360	POPTR_0010s00360 (11)	scaffold_10:148177-148584(-) (11)	NA	Q8LG10	GATA transcription factor 15	AT3G06740.1	GATA transcription factor 15 	LOC_Os03g61570.2	expressed protein	Medtr7g138200.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.48203.2.A1_a_at	A	A1TS	POPTR_0010s00360	POPTR_0010s00360 (11)	scaffold_10:148284-148682(-) (11)	NA	Q8LG10	GATA transcription factor 15	AT3G06740.1	GATA transcription factor 15 	LOC_Os03g61570.2	expressed protein	Medtr7g138200.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.48208.1.S1_at	A	A1TS	POPTR_0001s39050	POPTR_0001s39050 (10)	scaffold_1:38286171-38286782(-) (10)	NA	NA	NA	AT1G17030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19000.1	expressed protein	AC235677_33.1	hypothetical protein AC235677.1 140826-144182 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48215.1.S1_at	A	A1MS	POPTR_0011s03130	POPTR_0011s03130 (11)	scaffold_11:3188911-3189110(+) (11)	NA	Q9C7N5	GDSL esterase/lipase At1g29660	AT1G29660.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136390.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.48215.1.S1_s_at	A	A1TS	POPTR_0011s03130	POPTR_0011s03130 (11)	scaffold_11:3189106-3189558(+) (11)	NA	Q9C7N5	GDSL esterase/lipase At1g29660	AT1G29660.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136390.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.48222.1.A1_at	A	A1TS	POPTR_0001s12120	POPTR_0001s12120 (11)	scaffold_1:9393157-9393701(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48224.1.S1_at	A	A1TS	POPTR_0004s21990	POPTR_0004s21990 (11)	scaffold_4:20931957-20932332(-) (11)	NA	Q680Q4	E3 SUMO-protein ligase SIZ1	AT5G60410.5	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr4g080810.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.48228.1.A1_at	A	A1TS	POPTR_0015s11190	POPTR_0015s11190 (10)	scaffold_15:11836459-11836780(+) (10)	NA	NA	NA	NA	NA	LOC_Os12g27440.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4823.2.A1_a_at	A	A1TS	POPTR_0008s12800	POPTR_0008s12800 (11)	scaffold_8:8302493-8302836(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48231.1.S1_at	A	A1TS	POPTR_0004s16010	POPTR_0004s16010 (11)	scaffold_4:16479839-16479980(+) (11)	NA	NA	NA	AT1G11760.1	MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g40070.1	expressed protein	Medtr3g159700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48231.2.S1_s_at	A	A1TS	POPTR_0004s16010	POPTR_0004s16010 (11)	scaffold_4:16479402-16479611(+) (11)	NA	NA	NA	AT1G11760.1	MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g40070.1	expressed protein	Medtr3g159700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48231.3.A1_a_at	A	A1TS	POPTR_0004s16010	POPTR_0004s16010 (11)	scaffold_4:16479972-16480093(+) (11)	NA	NA	NA	AT1G11760.1	MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g40070.1	expressed protein	Medtr3g159700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48233.1.A1_at	A	A1TS	POPTR_0001s00330	POPTR_0001s00330 (11)	scaffold_1:195526-196991(-) (11)	NA	Q9C8U0	Flavin-containing monooxygenase FMO GS-OX-like 5	AT1G63370.1	Flavin-binding monooxygenase family protein 	LOC_Os10g40570.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr5g012290.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48236.1.S1_at	A	A1TS	POPTR_0003s20100	POPTR_0003s20100 (11)	scaffold_3:18692921-18693393(-) (11)	POPTR_0001s06090 (6)	Q9LPR8	Scarecrow-like protein 3	AT1G50420.1	scarecrow-like 3 	LOC_Os01g71970.1	"GRAS family transcription factor containing protein, expressed"	Medtr5g009100.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48242.1.S1_at	A	A1TS	POPTR_0007s11410	POPTR_0007s11410 (11)	scaffold_7:11777991-11778411(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48243.1.S1_at	A	A1TS	POPTR_0005s14610	POPTR_0005s14610 (11)	scaffold_5:11635707-11636050(+) (11)	NA	Q3AF87	Valyl-tRNA synthetase	AT5G16715.1	ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os03g48850.2	"valyl-tRNA synthetase, putative, expressed"	Medtr1g129510.1	"Isoleucyl-tRNA synthetase, class Ia; "	GO:0006438|valyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004832|valine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.48244.1.A1_at	A	A1TS	POPTR_0006s13110	POPTR_0006s13110 (11)	scaffold_6:10323448-10323756(-) (11)	NA	Q2UM42	Probable catabolite repression protein creC	AT3G53390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g07450.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g121380.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48273.1.A1_at	A	A1TS	POPTR_0017s10970	POPTR_0017s10970 (10)	scaffold_17:10558771-10560013(+) (10)	NA	Q04903	Protein farnesyltransferase subunit beta	AT5G40280.1	Prenyltransferase family protein 	LOC_Os01g53600.1	"farnesyltransferase subunit beta, putative, expressed"	Medtr4g133540.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.48281.1.S1_at	A	A1TS	POPTR_0018s12780	POPTR_0018s12780 (9)	scaffold_18:13292418-13292754(-) (9)	NA	Q9LTF7	Transcription factor MYB82	AT5G52600.1	myb domain protein 82 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48310.1.A1_at	A	A1TS	POPTR_0005s07000	POPTR_0005s07000 (10)	scaffold_5:4692927-4694216(-) (10)	NA	Q94502	Neutral alpha-glucosidase AB	AT5G63840.1	Glycosyl hydrolases family 31  protein 	LOC_Os03g11720.1	"glycosyl hydrolase, family 31, putative, expressed"	AC235665_50.1	"Glycoside hydrolase, family 31 AC235665.2 273864-279659 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.48310.2.S1_s_at	A	A1TS	POPTR_0007s04720	POPTR_0007s04720 (11)	scaffold_7:2930100-2930695(-) (11)	NA	P79403	Neutral alpha-glucosidase AB	AT5G63840.1	Glycosyl hydrolases family 31  protein 	LOC_Os03g11720.1	"glycosyl hydrolase, family 31, putative, expressed"	AC235665_50.1	"Glycoside hydrolase, family 31 AC235665.2 273864-279659 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.48314.1.S1_at	A	A1TS	POPTR_0005s11120	POPTR_0005s11120 (10)	scaffold_5:8062929-8063318(+) (10)	NA	Q6ZQ58	La-related protein 1	AT4G35890.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g64190.1	"la domain containing protein, putative, expressed"	Medtr5g022760.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48316.1.A1_at	A	A1MS	POPTR_0006s17780	POPTR_0006s17780 (9)	scaffold_6:15950420-15950731(+) (9)	POPTR_0007s06560 (7)	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4834.1.S1_a_at	A	A1TS	POPTR_0014s05180	POPTR_0014s05180 (11)	scaffold_14:3949547-3949702(-) (11)	NA	NA	NA	AT2G44670.1	Protein of unknown function (DUF581) 	LOC_Os04g49620.1	"DUF581 domain containing protein, expressed"	Medtr8g008600.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4834.2.S1_at	A	A1MS	POPTR_0014s05180	POPTR_0014s05180 (11)	scaffold_14:3949907-3950063(-) (11)	NA	NA	NA	AT2G44670.1	Protein of unknown function (DUF581) 	LOC_Os04g49620.1	"DUF581 domain containing protein, expressed"	Medtr8g008600.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48344.1.S1_a_at	A	A2TS	POPTR_0005s10220	POPTR_0005s10220 (11)//POPTR_0005s10230 (11)	scaffold_5:7326552-7326681(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4835.1.A1_a_at	A	A1MS	POPTR_0002s17440	POPTR_0002s17440 (11)	scaffold_2:13204189-13204456(+) (11)	NA	NA	NA	AT4G10810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g58010.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48352.1.A1_at	A	A1MS	POPTR_0008s04320	POPTR_0008s04320 (9)	scaffold_8:2412094-2412737(-) (9)	NA	Q8RWV3	Cyclin-L1-1	AT2G26430.1	arginine-rich cyclin 1 	LOC_Os01g27940.1	"cyclin-L1-1, putative, expressed"	Medtr5g068200.1	"Immunoglobulin/major histocompatibility complex; Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48354.1.S1_at	A	A1MS	POPTR_0011s07000	POPTR_0011s07000 (9)	scaffold_11:7745094-7745602(-) (9)	NA	NA	NA	AT1G29270.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g27090.1	"basic helix-loop-helix domain containing protein, expressed"	Medtr4g135450.1	transcription regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48384.1.A1_s_at	A	A1TS	POPTR_0008s11290	POPTR_0008s11290 (11)	scaffold_8:7141112-7141300(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48387.1.S1_a_at	A	A1TS	POPTR_0018s10780	POPTR_0018s10780 (11)	scaffold_18:11659397-11659714(+) (11)	NA	Q1LZA0	GPI mannosyltransferase 3	AT5G14850.1	Alg9-like mannosyltransferase family 	LOC_Os01g39810.2	"Alg9-like mannosyltransferase protein, putative, expressed"	Medtr8g127680.1	Alg9-like mannosyltransferase 	GO:0006506|GPI anchor biosynthetic process	"GO:0016757|""transferase activity, transferring glycosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.48388.1.S1_at	A	A1TS	POPTR_0004s06720	POPTR_0004s06720 (10)	scaffold_4:5377589-5378145(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g100650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48409.1.S1_at	A	A1TS	POPTR_0017s04120	POPTR_0017s04120 (9)	scaffold_17:3102700-3109627(+) (9)//scaffold_17:3172108-3179577(+) (10)//scaffold_17:3219119-3228480(+) (10)	POPTR_0017s04200 (8)//POPTR_0017s04180 (6)//POPTR_0017s04080 (6)	Q9FID6	Probable receptor-like protein kinase At5g39020	AT4G18250.1	"receptor serine/threonine kinase, putative "	LOC_Os01g02840.1	"resistance-related receptor-like kinase, putative"	Medtr1g034760.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.48416.1.A1_at	A	A1TS	POPTR_0006s12570	POPTR_0006s12570 (11)	scaffold_6:9717965-9718162(-) (11)	NA	A4QN59	Diphthamide biosynthesis protein 2	AT3G59630.1	diphthamide synthesis DPH2 family protein 	LOC_Os11g16430.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr1g009470.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48454.1.A1_at	A	A1TS	POPTR_0017s11420	POPTR_0017s11420 (11)	scaffold_17:11185270-11185487(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os05g51420.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g113260.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48469.1.A1_s_at	A	A1TS	POPTR_0004s14720	POPTR_0004s14720 (11)	scaffold_4:15373366-15373523(-) (11)	NA	Q9FXA4	U-box domain-containing protein 26	AT1G49780.1	plant U-box 26 	LOC_Os02g34410.1	"U-box domain-containing protein, putative, expressed"	Medtr4g130110.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.48490.1.A1_at	A	A1TS	POPTR_0001s25280	POPTR_0001s25280 (9)	scaffold_1:24450771-24451315(+) (9)	NA	Q9FIA0	Cytokinin-N-glucosyltransferase 2	AT3G46660.1	UDP-glucosyl transferase 76E12 	LOC_Os07g13770.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g092670.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4850.1.A1_s_at	A	A1TS	POPTR_0010s21980	POPTR_0010s21980 (11)	scaffold_10:19088062-19088567(+) (11)	NA	O65333	Chalcone--flavonone isomerase	AT3G55120.1	Chalcone-flavanone isomerase family protein 	LOC_Os03g60509.2	expressed protein	Medtr1g146030.1	Chalcone-flavanone isomerase 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
PtpAffx.48502.1.A1_at	A	A1TA	POPTR_0003s21260	POPTR_0003s21260 (11)	scaffold_3:19502315-19502857(-) (11)	NA	O80582	F-box/kelch-repeat protein At2g44130	AT2G44130.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os06g39370.1	"OsFBK16 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g134000.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48508.1.A1_s_at	A	A1TS	POPTR_0019s04700	POPTR_0019s04700 (11)	scaffold_19:4899799-4900064(+) (11)	NA	NA	NA	AT2G39050.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os07g48500.1	"stress responsive protein, putative, expressed"	Medtr7g100110.1	"glycoamidase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48519.1.A1_at	A	A2TS	POPTR_0017s06070	POPTR_0017s06070 (9)//POPTR_0017s06090 (9)	scaffold_17:4712959-4713492(+) (11)//scaffold_17:4728215-4738058(+) (11)//scaffold_322:15810-16357(-) (10)	POPTR_0322s00210 (6)	Q8VZR6	Probable inositol transporter 1	AT2G43330.1	inositol transporter 1 	LOC_Os04g41460.1	"transporter family protein, putative, expressed"	Medtr7g005590.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.48532.1.S1_at	A	A1TS	POPTR_0009s04730	POPTR_0009s04730 (9)	scaffold_9:5008135-5008609(+) (9)	NA	Q869R9	Myb-like protein J	AT5G58900.1	Homeodomain-like transcriptional regulator 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48549.1.A1_at	A	A1TS	POPTR_0009s13790	POPTR_0009s13790 (11)	scaffold_9:10927602-10927968(-) (11)	POPTR_0004s18170 (6)	NA	NA	AT2G16800.1	high-affinity nickel-transport family protein 	LOC_Os06g02580.1	"high-affinity nickel-transport family protein, putative, expressed"	Medtr4g098410.1	High-affinity nickel-transporter 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	GO:0016021|integral to membrane
PtpAffx.48572.1.S1_a_at	A	A1TS	POPTR_0001s01370	POPTR_0001s01370 (10)	scaffold_1:998734-999183(-) (10)	NA	NA	NA	AT4G25030.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g06550.1	expressed protein	Medtr5g027100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48582.1.A1_at	A	A1TS	POPTR_0003s18040	POPTR_0003s18040 (9)	scaffold_3:17253139-17253634(-) (9)	NA	Q91WL8	WW domain-containing oxidoreductase	AT4G27760.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g02470.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g090260.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.48586.1.A1_at	A	A1TS	POPTR_0006s27020	POPTR_0006s27020 (11)	scaffold_6:25050330-25050569(+) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.4862.1.S1_a_at	A	A1TS	POPTR_0003s15330	POPTR_0003s15330 (11)	scaffold_3:15148552-15149324(+) (11)	NA	Q5E9D6	Haloacid dehalogenase-like hydrolase domain-containing protein 3	AT5G44730.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os06g45440.2	"haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed"	Medtr4g090140.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.4863.1.S1_at	A	A1TS	POPTR_0004s14530	POPTR_0004s14530 (11)	scaffold_4:15134383-15134792(-) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4864.1.A1_at	A	A1TS	POPTR_0002s05400	POPTR_0002s05400 (11)	scaffold_2:3519630-3520019(+) (11)	NA	NA	NA	AT4G02800.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 3209 Blast hits to 2720 proteins in 308 species: Archae - 13; Bacteria - 213; Metazoa - 1207; Fungi - 247; Plants - 183; Viruses - 21; Other Eukaryotes - 1325 (source: NCBI BLink). 	LOC_Os04g15800.1	expressed protein	Medtr7g080690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4868.1.S1_at	A	A2TS	POPTR_0005s03510	POPTR_0005s03510 (11)//POPTR_0005s03220 (9)	scaffold_5:2122217-2122688(+) (11)//scaffold_5:2213772-2214250(+) (11)//scaffold_5:2360500-2360987(+) (11)	NA	Q9FZ32	F-box protein At1g55000	AT1G55000.3	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g49250.1	"OsFBO16 - F-box and other domain containing protein, expressed"	Medtr1g099560.1	Cyclin-like F-box; Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.4868.2.S1_at	A	A1TS	POPTR_0013s02260	POPTR_0013s02260 (11)	scaffold_13:1350307-1350823(+) (11)	NA	Q9FZ32	F-box protein At1g55000	AT1G55000.3	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g49250.1	"OsFBO16 - F-box and other domain containing protein, expressed"	Medtr1g099560.1	Cyclin-like F-box; Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.4868.3.S1_a_at	A	A4TS	POPTR_0005s03220	POPTR_0005s03510 (11)//POPTR_0005s03320 (11)//POPTR_0005s03370 (11)//POPTR_0005s03220 (11)	scaffold_5:2120569-2120896(+) (11)//scaffold_5:2132752-2133079(+) (10)//scaffold_5:2175385-2175712(+) (11)//scaffold_5:2212107-2212434(+) (11)//scaffold_5:2358833-2359160(+) (11)	POPTR_0005s03240 (7)	Q9FZ32	F-box protein At1g55000	AT1G55000.3	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g49250.1	"OsFBO16 - F-box and other domain containing protein, expressed"	Medtr1g099560.1	Cyclin-like F-box; Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.4868.3.S1_at	A	A2TS	POPTR_0005s03320	POPTR_0005s03320 (11)//POPTR_0005s03240 (10)	scaffold_5:2132738-2133244(+) (11)//scaffold_5:2175371-2175877(+) (11)	NA	Q9FZ32	F-box protein At1g55000	AT1G55000.3	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g49250.1	"OsFBO16 - F-box and other domain containing protein, expressed"	Medtr1g099560.1	Cyclin-like F-box; Peptidoglycan-binding LysM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4870.1.A1_at	A	A1MS	POPTR_0004s22300	POPTR_0004s22300 (10)	scaffold_4:21219258-21219504(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48763.2.S1_a_at	A	A1TS	POPTR_0006s05520	POPTR_0006s05520 (11)	scaffold_6:3897131-3897197(+) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g111060.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.48775.1.S1_at	A	A1TS	POPTR_0008s04200	POPTR_0008s04200 (10)	scaffold_8:2359085-2359118(+) (10)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48775.1.S1_s_at	A	A3TS	POPTR_0008s04200	POPTR_0010s17140 (11)//POPTR_0008s04200 (11)//POPTR_0013s02100 (10)	scaffold_10:15866947-15867279(+) (11)//scaffold_13:1236106-1236438(-) (10)//scaffold_8:2359213-2359545(+) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48775.2.S1_at	A	A1TS	POPTR_0010s17140	POPTR_0010s17140 (11)	scaffold_10:15866751-15866996(+) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48794.1.S1_s_at	A	A1TS	POPTR_0013s02980	POPTR_0013s02980 (11)	scaffold_13:1804478-1804651(-) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G27320.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g098780.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.48794.2.S1_at	A	A1TS	POPTR_0005s04240	POPTR_0005s04240 (11)	scaffold_5:2848683-2849699(-) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G27320.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g098780.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.48817.2.A1_a_at	A	A1TS	POPTR_0003s06680	POPTR_0003s06680 (11)	scaffold_3:8212066-8212526(+) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os07g42380.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g025650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.48817.3.S1_a_at	A	A2TS	POPTR_0001s16630	POPTR_0001s16630 (11)//POPTR_0003s06680 (11)	scaffold_1:13406109-13406151(-) (11)//scaffold_3:8212156-8212198(+) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os07g42380.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g025650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.48817.3.S1_at	A	A1TS	POPTR_0001s16630	POPTR_0001s16630 (11)	scaffold_1:13405785-13406235(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os07g42380.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g025650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.48824.1.S1_at	A	A1TS	POPTR_0001s24830	POPTR_0001s24830 (11)	scaffold_1:24064247-24066367(-) (11)	NA	Q9CQT9	Uncharacterized protein C20orf24 homolog	AT5G59410.1	Rab5-interacting family protein 	LOC_Os05g01994.1	"rab5-interacting protein like, putative, expressed"	Medtr2g116740.1	Rab5-interacting 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4884.1.S1_at	A	A1TS	POPTR_0004s16060	POPTR_0004s16060 (11)	scaffold_4:16516495-16516534(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g095320.1	"suspensor-specific protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48847.1.A1_a_at	A	A1TS	POPTR_0002s25400	POPTR_0002s25400 (11)	scaffold_2:22471908-22472374(+) (11)	NA	NA	NA	AT4G28820.2	HIT-type Zinc finger family protein 	LOC_Os01g61430.1	"HIT zinc finger domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48847.1.A1_at	A	A1TS	POPTR_0002s25400	POPTR_0002s25400 (11)	scaffold_2:22469461-22471896(+) (11)	NA	NA	NA	AT4G28820.2	HIT-type Zinc finger family protein 	LOC_Os01g61430.1	"HIT zinc finger domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48855.1.S1_at	A	A1TS	POPTR_0008s03470	POPTR_0008s03470 (11)	scaffold_8:1845345-1845735(+) (11)	NA	Q9FFB3	Vacuolar protein sorting-associated protein 24 homolog 1	AT5G22950.1	SNF7 family protein 	LOC_Os07g29630.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	GO:0015031|protein transport	NA	NA
PtpAffx.48855.2.S1_a_at	A	A1TS	POPTR_0008s03470	POPTR_0008s03470 (11)	scaffold_8:1842810-1845093(+) (11)	NA	Q9FFB3	Vacuolar protein sorting-associated protein 24 homolog 1	AT5G22950.1	SNF7 family protein 	LOC_Os07g29630.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	GO:0015031|protein transport	NA	NA
PtpAffx.4886.1.S1_a_at	A	A1TS	POPTR_0001s06160	POPTR_0001s06160 (11)	scaffold_1:4772023-4773700(-) (11)	NA	NA	NA	AT2G38780.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os05g31680.1	expressed protein	Medtr4g096460.1	"Start codon is not identified Stop codon is not identified, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4889.1.A1_at	A	A1TS	POPTR_0008s10120	POPTR_0008s10120 (11)	scaffold_8:6354277-6354404(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4889.1.A1_s_at	A	A1TS	POPTR_0008s10120	POPTR_0008s10120 (11)	scaffold_8:6353838-6354130(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4889.4.S1_at	A	A1TS	POPTR_0014s12850	POPTR_0014s12850 (11)	scaffold_14:9469794-9470023(-) (11)	NA	Q9LYC8	Monothiol glutaredoxin-S6	AT3G62930.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g129950.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.4889.5.A1_at	A	A1TS	POPTR_0020s00420	POPTR_0020s00420 (11)	scaffold_20:628771-629244(+) (11)	NA	Q9LYC8	Monothiol glutaredoxin-S6	AT3G62930.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g129950.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.4889.6.S1_a_at	A	A1TS	POPTR_0010s15940	POPTR_0010s15940 (11)	scaffold_10:15001554-15002207(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48890.1.A1_at	A	A1TS	POPTR_0016s14840	POPTR_0016s14840 (10)	scaffold_16:13956524-13957073(-) (10)	NA	O14197	Uncharacterized transporter C5D6.04	AT5G01990.1	Auxin efflux carrier family protein 	LOC_Os01g60230.4	"auxin efflux carrier component, putative, expressed"	Medtr7g080730.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.4890.1.A1_at	A	A1TS	POPTR_0003s13110	POPTR_0003s13110 (11)	scaffold_3:13498086-13498816(-) (11)	NA	Q99288	Putative phosphoglycerate mutase DET1	AT3G05170.1	Phosphoglycerate mutase family protein 	LOC_Os06g01950.1	"phosphoglycerate mutase, putative, expressed"	Medtr5g010190.1	Phosphoglycerate/bisphosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48900.1.A1_at	A	A1TS	POPTR_0013s08440	POPTR_0013s08440 (11)	scaffold_13:7587517-7588340(-) (11)	NA	NA	NA	AT5G16490.1	ROP-interactive CRIB motif-containing protein 4 	LOC_Os03g63060.1	"P21-Rho-binding domain containing protein, putative, expressed"	Medtr7g021460.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4891.1.A1_at	A	A1MS	POPTR_0008s10540	POPTR_0008s10540 (10)	scaffold_8:6606362-6607438(+) (10)	NA	NA	NA	AT3G17030.1	Nucleic acid-binding proteins superfamily 	LOC_Os03g61700.1	expressed protein	Medtr8g137660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4892.1.S1_a_at	A	A1TS	POPTR_0016s00230	POPTR_0016s00230 (11)	scaffold_16:21774-22198(+) (11)	NA	NA	NA	AT2G44190.1	Family of unknown function (DUF566)  	LOC_Os02g55110.1	expressed protein	Medtr2g033730.1	Alpha-isopropylmalate/homocitrate synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48924.1.S1_at	A	A1TS	POPTR_0001s00570	POPTR_0001s00570 (10)	scaffold_1:463556-464579(+) (10)	NA	Q9C641	"Elongation factor G, mitochondrial"	AT1G45332.1	Translation elongation factor EFG/EF2 protein 	LOC_Os03g36780.1	"elongation factor, putative, expressed"	Medtr2g025730.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.48928.1.S1_s_at	A	A1TS	POPTR_0012s03780	POPTR_0012s03780 (11)	scaffold_12:3014852-3015065(-) (11)	NA	P27161	Calmodulin	AT5G37780.1	calmodulin 1 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48934.1.S1_at	A	A1TS	POPTR_0002s20160	POPTR_0002s20160 (11)	scaffold_2:16112459-16113650(+) (11)	NA	Q84J70	Protein DEHYDRATION-INDUCED 19 homolog 3	AT3G05700.1	Drought-responsive family protein 	LOC_Os05g28980.1	"drought induced 19 protein, putative, expressed"	Medtr1g100290.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48962.1.S1_at	A	A1TS	POPTR_0003s12360	POPTR_0003s12360 (11)	scaffold_3:12961361-12961837(-) (11)	NA	Q43111	Pectinesterase 3	AT3G47670.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os09g26360.1	"pectinesterase, putative, expressed"	Medtr8g026630.1	Pectinesterase; Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.48987.1.A1_at	A	A1MS	POPTR_0009s01300	POPTR_0009s01300 (9)	scaffold_9:1572425-1572961(+) (9)	NA	NA	NA	AT5G60800.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os02g30650.1	"heavy metal-associated domain containing protein, expressed"	AC235487_8.1	Heavy metal transport/detoxification protein AC235487.1 51831-53181 H EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.49041.1.S1_at	A	A1TS	POPTR_0018s06290	POPTR_0018s06290 (11)	scaffold_18:6073722-6074103(+) (11)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os06g05130.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49041.2.A1_at	A	A1TS	POPTR_0006s16060	POPTR_0006s16060 (9)	scaffold_6:13883711-13883969(-) (9)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os06g05130.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49041.3.A1_at	A	A1TS	POPTR_0001s02970	POPTR_0001s02970 (10)	scaffold_1:2349903-2350298(-) (10)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49061.1.S1_s_at	A	A1TS	POPTR_0013s01400	POPTR_0013s01400 (11)	scaffold_13:803883-804867(-) (11)	NA	P53611	Geranylgeranyl transferase type-2 subunit beta	AT5G12210.1	RAB geranylgeranyl transferase beta subunit 1 	LOC_Os08g40140.1	"geranylgeranyl transferase type-2 subunit beta, putative, expressed"	Medtr4g133540.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.4908.1.A1_a_at	A	A1TS	POPTR_0011s13820	POPTR_0011s13820 (11)	scaffold_11:16458161-16458210(+) (11)	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.4908.1.A1_s_at	A	A1TS	POPTR_0011s13820	POPTR_0011s13820 (11)	scaffold_11:16457335-16458099(+) (11)	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.4908.3.A1_at	A	A1TS	POPTR_0001s47470	POPTR_0001s47470 (11)	scaffold_1:47654658-47654714(+) (11)	NA	NA	NA	AT5G56120.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g38790.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.491.1.S1_s_at	A	A1TS	POPTR_0006s24030	POPTR_0006s24030 (11)	scaffold_6:22728569-22728738(+) (11)	NA	P05477	17.9 kDa class II heat shock protein	AT5G12020.1	17.6 kDa class II heat shock protein 	LOC_Os01g08860.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr3g139550.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.491.2.A1_at	A	A1TS	POPTR_0014s12320	POPTR_0014s12320 (11)	scaffold_14:9105077-9105865(+) (11)	NA	Q8LB72	Blue-light photoreceptor PHR2	AT2G47590.1	photolyase/blue-light receptor 2 	LOC_Os03g22330.1	"blue-light photoreceptor PHR2, putative, expressed"	Medtr1g108320.1	"DNA photolyase, FAD- binding N-terminal "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.491.4.S1_at	A	A1MS	POPTR_0006s24030	POPTR_0006s24030 (11)	scaffold_6:22729081-22729167(+) (11)	NA	P05477	17.9 kDa class II heat shock protein	AT5G12020.1	17.6 kDa class II heat shock protein 	LOC_Os01g08860.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr3g139550.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4911.2.A1_a_at	A	A1TS	POPTR_0014s16270	POPTR_0014s16270 (11)	scaffold_14:12354184-12354238(-) (11)	NA	Q9LUB7	Protein OBERON 2	AT5G48160.2	Protein of unknown function (DUF1423) 	LOC_Os12g32980.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr5g105070.1	"Zinc finger, PHD-type; Arabidopsis thaliana 130.7kDa hypothetical protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49126.1.S1_at	A	A1TS	POPTR_0007s10060	POPTR_0007s10060 (11)	scaffold_7:9798283-9798951(-) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT5G67385.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g10880.1	"BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr5g016050.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.49129.1.S1_at	A	A1TS	POPTR_0019s09020	POPTR_0019s09020 (11)	scaffold_19:10614897-10615292(-) (11)	NA	NA	NA	AT2G40800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56430.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g07382.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4913.1.A1_at	A	A1TS	POPTR_0006s12730	POPTR_0006s12730 (11)	scaffold_6:9882164-9882428(+) (11)	NA	Q8LJT8	TSL-kinase interacting protein 1	AT2G36960.2	TSL-kinase interacting protein 1 	LOC_Os03g13790.2	"myb/SANT domain protein, putative, expressed"	Medtr4g141280.1	"myb/SANT domain protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49159.1.A1_at	A	A1TS	POPTR_0001s46060	POPTR_0001s46060 (11)	scaffold_1:46542394-46543328(-) (11)	NA	NA	NA	AT1G76520.2	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	Medtr8g087050.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.49170.1.A1_at	A	A1TS	POPTR_0006s14440	POPTR_0006s14440 (11)	scaffold_6:11804016-11804582(+) (11)	NA	NA	NA	AT2G06025.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g07990.1	"acetyltransferase, GNAT family, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.49171.1.S1_at	A	A1TS	POPTR_0007s00870	POPTR_0007s00870 (11)	scaffold_7:442524-442790(+) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G43820.1	UDP-glucosyltransferase 74F2 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g137110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49182.1.S1_at	A	A1TS	POPTR_0011s09270	POPTR_0011s09270 (10)	scaffold_11:11490692-11491025(-) (10)	NA	NA	NA	AT4G26980.1	RNI-like superfamily protein 	LOC_Os06g46590.2	expressed protein	Medtr5g100310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4921.1.A1_x_at	A	A1TS	POPTR_0008s07860	POPTR_0008s07860 (11)	scaffold_8:4830782-4833503(+) (11)	POPTR_0008s07850 (7)	NA	NA	NA	NA	NA	NA	Medtr1g024570.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4924.1.A1_at	A	A1TS	POPTR_0016s12490	POPTR_0016s12490 (11)	scaffold_16:11942640-11942911(-) (11)	NA	P48620	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.49244.1.S1_at	A	A1TS	POPTR_0008s15590	POPTR_0008s15590 (11)	scaffold_8:10372169-10372693(+) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49251.1.A1_at	A	A1TS	POPTR_0002s01680	POPTR_0002s01680 (11)	scaffold_2:889099-889622(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr1g143280.1	Tyrosine protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.49296.1.A1_at	A	A1TS	POPTR_0015s08540	POPTR_0015s08540 (11)	scaffold_15:9830687-9831190(+) (11)	NA	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.49298.2.S1_s_at	A	A1TS	POPTR_0004s19500	POPTR_0004s19500 (11)	scaffold_4:19327992-19328044(-) (11)	NA	Q9ZNU9	Zinc finger A20 and AN1 domain-containing stress-associated protein 3	AT2G27580.2	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g069850.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.49323.1.S1_s_at	A	A1TS	POPTR_0016s06870	POPTR_0016s06870 (11)	scaffold_16:4660693-4660810(+) (11)	NA	P19684	"33 kDa ribonucleoprotein, chloroplastic"	AT3G52380.1	chloroplast RNA-binding protein 33 	LOC_Os07g06450.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g149790.1	RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding EF-hand 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.49323.2.S1_at	A	A1TS	POPTR_0006s21650	POPTR_0006s21650 (11)	scaffold_6:20678821-20680062(+) (11)	NA	P19684	"33 kDa ribonucleoprotein, chloroplastic"	AT3G52380.1	chloroplast RNA-binding protein 33 	LOC_Os07g06450.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g149790.1	RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding EF-hand 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.49362.1.A1_s_at	A	A3TS	POPTR_0005s03010	POPTR_0005s03050 (11)//POPTR_0005s03010 (11)//POPTR_0005s03480 (10)	scaffold_5:1970875-1971003(-) (11)//scaffold_5:1994866-1994994(-) (11)//scaffold_5:2337936-2338064(-) (10)	NA	O81635	Kinesin-4	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.4938.1.S1_s_at	A	A1TA	POPTR_0005s15070	POPTR_0005s15070 (10)	scaffold_5:11868990-11869164(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49382.1.S1_at	A	A1TS	POPTR_0001s36640	POPTR_0001s36640 (11)	scaffold_1:35316911-35317170(-) (11)	NA	NA	NA	AT4G22320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins in 542 species: Archae - 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI BLink). 	NA	NA	Medtr2g029560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49382.3.S1_a_at	A	A1TS	POPTR_0001s36640	POPTR_0001s36640 (11)	scaffold_1:35318320-35318616(-) (11)	NA	NA	NA	AT4G22320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins in 542 species: Archae - 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI BLink). 	NA	NA	Medtr2g029560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49389.1.A1_at	A	A1TS	POPTR_0007s05070	POPTR_0007s05070 (11)	scaffold_7:3271636-3272644(+) (11)	NA	Q9JJK2	LanC-like protein 2	AT5G65280.1	GCR2-like 1 	LOC_Os10g35480.1	"lanC-like protein 2, putative, expressed"	Medtr3g102050.1	Lanthionine synthetase C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.494.1.S1_at	A	A1MS	POPTR_0008s14360	POPTR_0008s14360 (11)	scaffold_8:9520006-9520549(+) (11)	NA	Q8L799	Inositol oxygenase 1	AT1G14520.2	myo-inositol oxygenase 1 	LOC_Os06g36560.2	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
PtpAffx.4940.1.A1_at	A	A1TS	POPTR_0017s08470	POPTR_0017s08470 (11)	scaffold_17:7045863-7046785(-) (11)	NA	Q9SCV3	Beta-galactosidase 9	AT2G32810.1	beta galactosidase 9 	LOC_Os12g24170.1	"beta-galactosidase precursor, putative, expressed"	Medtr4g133430.1	"D-galactoside/L-rhamnose binding SUEL lectin; Glycoside hydrolase, family 35 "	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.49413.1.S1_at	A	A1TS	POPTR_0010s05210	POPTR_0010s05210 (9)	scaffold_10:6673302-6673817(+) (9)	NA	NA	NA	AT1G10657.3	Plant protein 1589 of unknown function 	LOC_Os05g38680.1	"plant-specific domain TIGR01589 family protein, expressed"	Medtr7g022750.1	Uncharacterized plant-specific domain 01589 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4942.1.S1_at	A	A1TS	POPTR_0009s13240	POPTR_0009s13240 (11)	scaffold_9:10584332-10584770(+) (11)	NA	P45434	Translocon-associated protein subunit alpha	AT2G21160.1	"Translocon-associated protein (TRAP), alpha subunit "	LOC_Os06g50154.1	"translocon-associated protein subunit alpha precursor, putative, expressed"	Medtr4g100770.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4942.2.S1_s_at	A	A1TS	POPTR_0004s17580	POPTR_0004s17580 (11)	scaffold_4:17721851-17723087(+) (11)	NA	P45434	Translocon-associated protein subunit alpha	AT2G16595.1	"Translocon-associated protein (TRAP), alpha subunit "	LOC_Os06g50154.1	"translocon-associated protein subunit alpha precursor, putative, expressed"	Medtr3g163280.1	"Translocon-associated protein subunit alpha precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4943.1.A1_s_at	A	A1TS	POPTR_0010s16880	POPTR_0010s16880 (11)	scaffold_10:15689523-15690726(+) (11)	NA	NA	NA	AT2G03420.1	unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g11230.1	expressed protein	Medtr5g046430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4943.2.A1_at	A	A1MS	POPTR_0010s16880	POPTR_0010s16880 (10)	scaffold_10:15690977-15691202(+) (10)	NA	NA	NA	AT2G03420.1	unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g11230.1	expressed protein	Medtr5g046430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49430.1.S1_at	A	A1MS	POPTR_0003s14200	POPTR_0003s14200 (10)	scaffold_3:14333698-14334265(+) (10)	NA	Q9XED8	Auxin response factor 9	AT4G23980.2	auxin response factor 9 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr4g019570.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.49441.1.A1_at	A	A1TS	POPTR_0007s04490	POPTR_0007s04490 (11)	scaffold_7:2771916-2771977(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT5G63940.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os12g07990.1	"protein kinase family protein, putative"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.49441.1.A1_s_at	A	A1TS	POPTR_0007s04490	POPTR_0007s04490 (11)	scaffold_7:2771496-2771799(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT5G63940.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os12g07990.1	"protein kinase family protein, putative"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.49444.1.S1_s_at	A	A1TS	POPTR_0017s07490	POPTR_0017s07490 (11)	scaffold_17:5830222-5830724(+) (11)	NA	Q8LRK9	Transcription initiation factor TFIID subunit 1-A	AT1G32750.1	HAC13 protein (HAC13) 	LOC_Os06g43790.1	"transcription initiation factor TFIID subunit 1, putative, expressed"	Medtr5g026850.1	Ubiquitin; TAFII-230 TBP-binding 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.49454.1.S1_s_at	A	A1TS	POPTR_0005s28010	POPTR_0005s28010 (11)	scaffold_5:25421065-25421505(+) (11)	NA	Q8RY95	Squamosa promoter-binding-like protein 14	AT1G20980.1	squamosa promoter binding protein-like 14 	LOC_Os08g40260.1	"OsSPL15 - SBP-box gene family member, expressed"	Medtr1g039740.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.49456.1.S1_at	A	A1TS	POPTR_0015s15720	POPTR_0015s15720 (11)	scaffold_15:14933709-14934257(+) (11)	NA	NA	NA	AT5G45100.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os03g46570.1	"protein binding protein, putative, expressed"	Medtr2g034400.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4946.1.S1_at	A	A1TS	POPTR_0005s25290	POPTR_0005s25290 (10)	scaffold_5:23599990-23600288(+) (10)	NA	P24068	Ocs element-binding factor 1	AT1G75390.1	basic leucine-zipper 44 	LOC_Os02g03960.1	"CPuORF1 - conserved peptide uORF-containing transcript, expressed"	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.4946.2.S1_at	A	A1TS	POPTR_0002s03330	POPTR_0002s03330 (11)	scaffold_2:2039049-2039605(-) (11)	NA	P24068	Ocs element-binding factor 1	AT1G75390.1	basic leucine-zipper 44 	LOC_Os02g03960.1	"CPuORF1 - conserved peptide uORF-containing transcript, expressed"	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.49470.1.S1_at	A	A1TS	POPTR_0015s15500	POPTR_0015s15500 (11)	scaffold_15:14747457-14747818(-) (11)	NA	Q9SA16	Protein PHLOEM PROTEIN 2-LIKE A9	AT1G10155.1	phloem protein 2-A10 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49472.1.S1_at	A	A1TS	POPTR_0014s09720	POPTR_0014s09720 (10)	scaffold_14:7245232-7245692(+) (10)	NA	NA	NA	AT2G46600.1	Calcium-binding EF-hand family protein 	LOC_Os02g03020.1	"EF hand family protein, putative, expressed"	Medtr8g029480.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49480.1.A1_at	A	A1TS	POPTR_0005s19370	POPTR_0005s19370 (10)	scaffold_5:18176084-18176422(+) (10)	NA	Q9SUG3	Inositol-tetrakisphosphate 1-kinase 2	AT4G08170.2	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os03g12840.2	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr5g005520.1	"Ribosomal protein L19; Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.49484.1.A1_at	A	A1TS	POPTR_0016s13180	POPTR_0016s13180 (10)	scaffold_16:12421928-12421962(-) (10)	NA	O65020	Ethylene-overproduction protein 1	AT3G51770.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os03g18360.1	"BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr4g012110.1	"Ethylene-overproduction protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49484.1.A1_s_at	A	A1TS	POPTR_0016s13180	POPTR_0016s13180 (11)	scaffold_16:12422070-12422494(-) (11)	NA	O65020	Ethylene-overproduction protein 1	AT3G51770.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os03g18360.1	"BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr4g012110.1	"Ethylene-overproduction protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4950.1.S1_at	A	A1TS	POPTR_0005s14880	POPTR_0005s14880 (10)	scaffold_5:11774317-11774693(-) (10)	NA	P48724	Eukaryotic translation initiation factor 5	AT1G77840.1	Translation initiation factor IF2/IF5 	LOC_Os06g48355.1	expressed protein	Medtr7g094130.1	Translation initiation factor IF5; eIF4-gamma/eIF5/eIF2-epsilon 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.49505.1.A1_at	A	A1TS	POPTR_0011s02710	POPTR_0011s02710 (11)	scaffold_11:2663202-2663701(+) (11)	NA	Q9ASX9	Transcription factor bHLH144	AT1G29950.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g39432.2	"CPuORF31 - conserved peptide uORF-containing transcript, expressed"	Medtr4g165940.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.49511.1.A1_at	A	A1TS	POPTR_0017s02910	POPTR_0017s02910 (11)	scaffold_17:2103797-2104510(-) (11)	NA	Q41932	"Oxygen-evolving enhancer protein 3-2, chloroplastic"	AT2G01918.1	PsbQ-like 3 	LOC_Os04g44200.1	"oxygen-evolving enhancer protein 3, chloroplast precursor, putative"	Medtr3g086220.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.49512.1.A1_at	A	A1TS	POPTR_0014s09460	POPTR_0014s09460 (11)	scaffold_14:7026632-7026904(-) (11)	NA	NA	NA	AT3G61780.1	embryo defective 1703 	NA	NA	AC235758_33.1	EMB1703 AC235758.1 217382-211662 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49520.1.A1_a_at	A	A1TS	POPTR_0001s26450	POPTR_0001s26450 (11)	scaffold_1:25478192-25478602(-) (11)	NA	NA	NA	AT2G01870.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr3g080650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49526.1.A1_at	A	A1TS	POPTR_0008s21100	POPTR_0008s21100 (11)	scaffold_8:15239244-15239772(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4953.1.A1_at	A	A1TS	POPTR_0010s03290	POPTR_0010s03290 (11)	scaffold_10:4049601-4050085(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49543.1.A1_at	A	A1TS	POPTR_0005s01970	POPTR_0005s01970 (11)	scaffold_5:1282970-1283533(-) (11)	NA	Q9FT74	ATP-dependent DNA helicase Q-like 1	AT3G05740.1	RECQ helicase l1 	LOC_Os11g44910.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g100350.1	"Helicase, C-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.49549.1.S1_at	A	A1TS	POPTR_0010s04430	POPTR_0010s04430 (11)	scaffold_10:5521209-5521746(-) (11)	NA	Q9D832	DnaJ homolog subfamily B member 4	AT1G10350.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	AC235756_5.1	Heat shock protein DnaJ AC235756.1 49207-45302 F EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.49549.2.S1_a_at	A	A2TS	POPTR_0008s19860	POPTR_0010s04430 (11)//POPTR_0008s19860 (11)	scaffold_10:5521898-5523270(-) (11)//scaffold_8:13710011-13711234(+) (11)	NA	Q9D832	DnaJ homolog subfamily B member 4	AT1G10350.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	AC235756_5.1	Heat shock protein DnaJ AC235756.1 49207-45302 F EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.49549.2.S1_at	A	A1TS	POPTR_0008s19860	POPTR_0008s19860 (11)	scaffold_8:13709872-13710186(+) (11)	NA	Q9D832	DnaJ homolog subfamily B member 4	AT1G10350.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	AC235756_5.1	Heat shock protein DnaJ AC235756.1 49207-45302 F EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.49565.1.A1_at	A	A1TS	POPTR_0002s17370	POPTR_0002s17370 (11)	scaffold_2:13141663-13142731(+) (11)	NA	Q9M160	Uncharacterized protein At4g00950	AT4G00950.1	Protein of unknown function (DUF688) 	NA	NA	Medtr1g009040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49569.1.A1_at	A	A1TS	POPTR_0010s14070	POPTR_0010s14070 (11)	scaffold_10:13773088-13774255(+) (11)	NA	Q6DYE4	"Uncharacterized protein At1g26090, chloroplastic"	AT1G26090.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g48130.1	"uncharacterized protein At1g26090, chloroplast precursor, putative, expressed"	Medtr5g069480.1	"Uncharacterized protein At1g26090, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49585.1.A1_at	A	A1TS	POPTR_0003s20050	POPTR_0003s20050 (11)	scaffold_3:18659960-18660491(-) (11)	NA	NA	NA	AT1G34570.1	"Essential protein Yae1, N-terminal "	LOC_Os01g72200.1	expressed protein	Medtr4g096490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49589.1.S1_at	A	A1TS	POPTR_0004s03340	POPTR_0004s03340 (10)	scaffold_4:2280458-2281052(+) (10)	NA	NA	NA	AT4G21445.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g54320.1	expressed protein	Medtr2g013520.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4959.1.A1_at	A	A1TS	POPTR_0001s13870	POPTR_0001s13870 (11)	scaffold_1:10926760-10927158(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13060.2	evolutionarily conserved C-terminal region 5 	LOC_Os08g44200.1	"ECT5, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49598.1.A1_s_at	A	A1TS	POPTR_0006s11420	POPTR_0006s11420 (10)	scaffold_6:8657210-8657857(-) (10)	NA	Q9M385	"50S ribosomal protein L17, chloroplastic"	AT3G54210.1	Ribosomal protein L17 family protein 	LOC_Os03g60100.1	"50S ribosomal protein L17, putative, expressed"	Medtr3g143710.1	Ribosomal protein L17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.496.1.S1_a_at	A	A2TS	POPTR_0006s15880	POPTR_0006s15880 (11)//POPTR_0018s06660 (11)	scaffold_18:6704136-6704657(-) (11)//scaffold_6:13551358-13551891(-) (11)	NA	Q9SW96	"Asparaginyl-tRNA synthetase, cytoplasmic 1"	AT5G56680.1	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os01g27520.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr4g160420.1	"tRNA synthetase, class II (D, K and N); S15/NS1, RNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.496.1.S1_at	A	A1TS	POPTR_0018s06660	POPTR_0018s06660 (11)	scaffold_18:6703836-6704529(-) (11)	NA	Q9SW96	"Asparaginyl-tRNA synthetase, cytoplasmic 1"	AT5G56680.1	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os01g27520.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr4g160420.1	"tRNA synthetase, class II (D, K and N); S15/NS1, RNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.496.3.S1_a_at	A	A2TS	POPTR_0006s15880	POPTR_0006s15880 (11)//POPTR_0018s06660 (11)	scaffold_18:6706249-6706384(-) (11)//scaffold_6:13553571-13553706(-) (11)	NA	Q9SW96	"Asparaginyl-tRNA synthetase, cytoplasmic 1"	AT5G56680.1	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os01g27520.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr4g160420.1	"tRNA synthetase, class II (D, K and N); S15/NS1, RNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.496.3.S1_at	A	A1TS	POPTR_0018s06660	POPTR_0018s06660 (11)	scaffold_18:6705919-6706421(-) (11)	NA	Q9SW96	"Asparaginyl-tRNA synthetase, cytoplasmic 1"	AT5G56680.1	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os01g27520.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr4g160420.1	"tRNA synthetase, class II (D, K and N); S15/NS1, RNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.49611.1.A1_at	A	A1TS	POPTR_0003s06690	POPTR_0003s06690 (11)	scaffold_3:8221950-8222428(+) (11)	NA	NA	NA	AT1G72390.1	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). 	LOC_Os10g25200.1	expressed protein	Medtr8g025570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49612.1.A1_at	A	A1TS	POPTR_0009s06480	POPTR_0009s06480 (11)	scaffold_9:6246782-6247112(+) (11)	NA	Q7UBC5	tRNA-dihydrouridine synthase A	AT3G63510.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os04g20990.1	"tRNA-dihydrouridine synthase, putative, expressed"	Medtr3g029890.1	"Dihydrouridine synthase, DuS "	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity	NA
PtpAffx.49616.1.A1_s_at	A	A1TS	POPTR_0016s04140	POPTR_0016s04140 (11)	scaffold_16:2363756-2364127(+) (10)	NA	NA	NA	AT3G57200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41451.1); Has 94 Blast hits to 94 proteins in 31 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g13200.1	"abscisic acid insensitive 8, putative, expressed"	Medtr3g026170.1	"ABI8/ELD1/KOB1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4962.1.S1_at	A	A1TS	POPTR_0015s14520	POPTR_0015s14520 (11)	scaffold_15:14087846-14088221(+) (11)	NA	NA	NA	AT5G51550.1	EXORDIUM like 3 	LOC_Os06g04250.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49623.1.S1_at	A	A1TS	POPTR_0002s19030	POPTR_0002s19030 (11)	scaffold_2:14933851-14935941(+) (11)	NA	Q9LRP7	Autophagy-related protein 8i	AT3G15580.1	Ubiquitin-like superfamily protein 	LOC_Os11g01010.1	"autophagy-related protein 8D, putative, expressed"	Medtr8g134240.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49635.1.S1_at	A	A1TS	POPTR_0002s03470	POPTR_0002s03470 (10)	scaffold_2:2147862-2148242(-) (11)	NA	Q9FWS4	"50S ribosomal protein L31, chloroplastic"	AT1G75350.1	Ribosomal protein L31 	LOC_Os01g44210.1	"50S ribosomal protein L31, putative, expressed"	AC235668_16.2	Ribosomal protein L31 AC235668.1 51599-52557 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.49638.1.A1_at	A	A1TS	POPTR_0004s20830	POPTR_0004s20830 (10)	scaffold_4:20211151-20211289(+) (10)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20780.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.4964.1.S1_s_at	A	A1TS	POPTR_0015s13160	POPTR_0015s13160 (11)	scaffold_15:13228088-13228589(+) (11)	NA	Q60720	Cytochrome b561	AT4G25570.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os02g42890.1	"cytochrome b561, putative, expressed"	AC235674_2.2	Cytochrome b561 / ferric reductase transmembrane AC235674.1 14925-10160 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.49642.1.A1_at	A	A1TS	POPTR_0015s13480	POPTR_0015s13480 (11)	scaffold_15:13413125-13413468(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4965.1.A1_at	A	A1TS	POPTR_0005s10770	POPTR_0005s10770 (9)	scaffold_5:7734777-7735193(+) (9)	NA	Q9C5Y0	Phospholipase D delta	AT4G35790.2	phospholipase D delta 	LOC_Os09g37100.1	"phospholipase D, putative, expressed"	Medtr5g023030.1	C2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.4965.2.A1_at	A	A1TS	POPTR_0007s09320	POPTR_0007s09320 (11)	scaffold_7:8689797-8690313(-) (11)	NA	Q9C5Y0	Phospholipase D delta	AT4G35790.2	phospholipase D delta 	LOC_Os09g37100.1	"phospholipase D, putative, expressed"	Medtr5g023030.1	C2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.49655.1.A1_at	A	A1TS	POPTR_0003s09730	POPTR_0003s09730 (9)	scaffold_3:10978651-10979191(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49657.1.A1_at	A	A1TS	POPTR_0012s03980	POPTR_0012s03980 (11)	scaffold_12:3191773-3192150(-) (11)	NA	O23044	Peroxidase 3	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os06g46799.1	"peroxidase precursor, putative, expressed"	AC235488_1.1	"Haem peroxidase, plant/fungal/bacterial AC235488.1 90-1843 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.49662.1.A1_at	A	A1TS	POPTR_0016s05930	POPTR_0016s05930 (11)	scaffold_16:3877660-3878028(-) (11)	NA	NA	NA	AT5G06700.1	Plant protein of unknown function (DUF828) 	LOC_Os06g10560.1	"leaf senescence related protein, putative, expressed"	Medtr7g112170.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49699.1.A1_at	A	A1TS	POPTR_0001s34320	POPTR_0001s34320 (11)	scaffold_1:32481551-32482370(-) (11)	NA	NA	NA	AT5G46530.1	AWPM-19-like family protein 	LOC_Os01g50440.1	"AWPM-19-like membrane family protein, putative, expressed"	Medtr6g084000.1	AWPM-19-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4971.2.S1_a_at	A	A2TS	POPTR_0015s06550	POPTR_0015s06550 (11)//POPTR_0012s05390 (10)	scaffold_12:5036525-5037265(+) (10)//scaffold_15:7487720-7488550(-) (11)	NA	O75716	Serine/threonine-protein kinase 16	AT5G08160.1	serine/threonine protein kinase 3 	LOC_Os09g20640.1	"serine/threonine-protein kinase 16, putative, expressed"	Medtr8g115300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.4971.3.A1_a_at	A	A1TS	POPTR_0001s37000	POPTR_0001s37000 (11)	scaffold_1:35825310-35826637(+) (11)	POPTR_0011s08710 (8)	Q6P819	Cell differentiation protein RCD1 homolog	AT3G20800.1	"Cell differentiation, Rcd1-like protein "	LOC_Os07g37790.1	expressed protein	Medtr4g155270.1	"Cell differentiation proteins, Rcd1-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4971.4.S1_a_at	A	A2TS	POPTR_0001s37000	POPTR_0001s37000 (11)//POPTR_0011s08720 (11)	scaffold_1:35823270-35823661(+) (11)//scaffold_11:10717762-10718146(-) (11)	NA	Q6P819	Cell differentiation protein RCD1 homolog	AT3G20800.1	"Cell differentiation, Rcd1-like protein "	LOC_Os07g37790.1	expressed protein	Medtr4g155270.1	"Cell differentiation proteins, Rcd1-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49718.2.S1_a_at	A	A1TS	POPTR_0014s16630	POPTR_0014s16630 (11)	scaffold_14:12715592-12716101(-) (11)	NA	Q93XW5	Nitrile-specifier protein 5	AT3G07720.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os09g07460.1	"kelch repeat protein, putative, expressed"	Medtr2g088240.1	Kelch-type beta propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49722.1.A1_s_at	A	A1TS	POPTR_0019s10150	POPTR_0019s10150 (11)	scaffold_19:11722392-11723660(-) (11)	NA	Q5U378	Tubulin-specific chaperone E	AT1G71440.1	tubulin folding cofactor E / Pfifferling (PFI) 	LOC_Os05g01500.1	"tubulin-specific chaperone E, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.4973.1.S1_at	A	A1TS	POPTR_0006s12900	POPTR_0006s12900 (11)	scaffold_6:10063212-10063593(-) (11)	NA	Q9S814	Ethylene-insensitive protein 2	AT5G03280.1	NRAMP metal ion transporter family protein 	LOC_Os07g06130.3	"ethylene-insensitive protein, putative, expressed"	Medtr7g121800.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.4973.2.A1_at	A	A1TS	POPTR_0016s09210	POPTR_0016s09210 (11)	scaffold_16:7201293-7201565(+) (11)	NA	Q9S814	Ethylene-insensitive protein 2	AT5G03280.1	NRAMP metal ion transporter family protein 	LOC_Os07g06130.3	"ethylene-insensitive protein, putative, expressed"	Medtr7g121800.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.4973.2.A1_s_at	A	A1TS	POPTR_0016s09210	POPTR_0016s09210 (11)	scaffold_16:7201369-7201732(+) (11)	NA	Q9S814	Ethylene-insensitive protein 2	AT5G03280.1	NRAMP metal ion transporter family protein 	LOC_Os07g06130.3	"ethylene-insensitive protein, putative, expressed"	Medtr7g121800.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.49746.1.A1_at	A	A1TS	POPTR_0015s03810	POPTR_0015s03810 (10)	scaffold_15:3696105-3698206(+) (10)	NA	Q8VYB5	AMSH-like ubiquitin thiolesterase 1	AT1G48790.1	associated molecule with the SH3 domain of STAM 1 	LOC_Os01g31470.1	"mov34/MPN/PAD-1 family protein, expressed"	Medtr6g027970.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49746.2.A1_at	A	A1MS	POPTR_0015s03810	POPTR_0015s03810 (11)	scaffold_15:3697571-3697992(+) (11)	NA	Q8VYB5	AMSH-like ubiquitin thiolesterase 1	AT1G48790.1	associated molecule with the SH3 domain of STAM 1 	LOC_Os01g31470.1	"mov34/MPN/PAD-1 family protein, expressed"	Medtr6g027970.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4975.1.A1_at	A	A1MS	POPTR_0002s12440	POPTR_0002s12440 (9)	scaffold_2:9225620-9225950(-) (9)	NA	Q8GXG1	Probable isoaspartyl peptidase/L-asparaginase 2	AT3G16150.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os04g55710.1	"transposon protein, putative, unclassified, expressed"	Medtr1g023790.1	"Peptidase T2, asparaginase 2 "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.49750.1.A1_at	A	A1TS	POPTR_0003s17950	POPTR_0003s17950 (11)	scaffold_3:17183171-17183219(+) (11)	NA	Q9SAI2	Probable CCR4-associated factor 1 homolog 6	AT1G80780.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr4g022250.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.49767.2.A1_a_at	A	A1TS	POPTR_0012s12810	POPTR_0012s12810 (11)	scaffold_12:13216622-13216857(+) (11)	NA	P74436	Uncharacterized transporter sll0355	AT3G02690.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g35140.1	"integral membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.4977.1.A1_at	A	A1TS	POPTR_0011s15910	POPTR_0011s15910 (11)	scaffold_11:17926019-17926149(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.49776.1.S1_at	A	A1TS	POPTR_0001s47530	POPTR_0001s47530 (11)	scaffold_1:47691164-47691992(+) (11)	NA	P45816	SEC14 cytosolic factor	AT1G55690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os08g25310.1	"phosphatidylinositol transfer, putative, expressed"	Medtr3g016810.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4978.4.S1_s_at	A	A1TS	POPTR_0013s04360	POPTR_0013s04360 (9)	scaffold_13:2978691-2978800(+) (11)	NA	NA	NA	AT5G28490.1	Protein of unknown function (DUF640) 	LOC_Os05g28040.1	"DUF640 domain containing protein, putative, expressed"	Medtr1g043150.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4978.5.S1_at	A	A1TA	POPTR_0009s12150	POPTR_0009s12150 (10)	scaffold_9:9960472-9960692(+) (10)	NA	P46301	40S ribosomal protein S25	AT4G39200.1	Ribosomal protein S25 family protein 	LOC_Os08g44480.1	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49786.1.A1_at	A	A1TS	POPTR_0012s11400	POPTR_0012s11400 (11)	scaffold_12:11853761-11854227(-) (11)	NA	P22302	"Superoxide dismutase [Fe], chloroplastic (Fragment)"	AT5G51100.1	Fe superoxide dismutase 2 	LOC_Os06g05110.3	"superoxide dismutase, chloroplast, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
PtpAffx.49787.2.S1_a_at	A	A1TS	POPTR_0004s03830	POPTR_0004s03830 (11)	scaffold_4:2719913-2720557(-) (11)	NA	Q42656	Alpha-galactosidase	AT5G08370.1	alpha-galactosidase 2 	LOC_Os10g35110.2	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4979.1.A1_at	A	A1TS	POPTR_0006s11810	POPTR_0006s11810 (11)	scaffold_6:8985391-8985925(-) (11)	NA	Q9LZR3	Glucomannan 4-beta-mannosyltransferase 9	AT5G03760.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr1g073500.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49790.1.A1_at	A	A2TS	POPTR_0001s37800	POPTR_0001s37800 (11)//POPTR_1588s00200 (9)	scaffold_1:36881073-36881437(+) (11)//scaffold_1588:4362-4726(-) (11)	NA	A5DK49	Altered inheritance of mitochondria protein 32	AT4G26620.1	Sucrase/ferredoxin-like family protein 	LOC_Os02g49320.1	"sucrase-related, putative, expressed"	Medtr5g103730.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49799.1.A1_at	A	A1MS	POPTR_0229s00260	POPTR_0229s00260 (11)	scaffold_229:29060-29154(+) (11)	POPTR_0793s00200 (8)//POPTR_0004s09390 (8)//POPTR_0229s00240 (7)	Q9LYT3	Protein TRANSPARENT TESTA 12	AT2G04100.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.4980.1.S1_a_at	A	A1TS	POPTR_0010s09080	POPTR_0010s09080 (11)	scaffold_10:9927409-9927739(-) (11)	NA	NA	NA	AT3G22970.1	Protein of unknown function (DUF506)  	LOC_Os03g58230.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr1g083310.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4980.3.A1_at	A	A1TS	POPTR_0008s15960	POPTR_0008s15960 (10)	scaffold_8:10656608-10657054(+) (11)	NA	NA	NA	AT3G22970.1	Protein of unknown function (DUF506)  	LOC_Os03g58230.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr1g083310.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49806.1.A1_at	A	A1TS	POPTR_0012s05680	POPTR_0012s05680 (11)	scaffold_12:5445202-5451070(+) (11)	NA	NA	NA	AT1G18470.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49812.2.A1_at	A	A1TS	POPTR_0017s09660	POPTR_0017s09660 (11)	scaffold_17:8320488-8325091(-) (11)//scaffold_17:8324878-8325076(-) (10)//scaffold_200:9817-10015(-) (9)//scaffold_200:14200-14398(-) (9)	NA	NA	NA	AT3G01930.2	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49816.1.S1_at	A	A1TS	POPTR_0006s14930	POPTR_0006s14930 (11)	scaffold_6:12415066-12415546(-) (11)	NA	Q38932	"Lycopene epsilon cyclase, chloroplastic"	AT5G57030.1	Lycopene beta/epsilon cyclase protein 	LOC_Os01g39960.1	"lycopene epsilon cyclase, chloroplast precursor, putative, expressed"	Medtr2g046700.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.49826.1.A1_at	A	A1TS	POPTR_0006s08420	POPTR_0006s08420 (11)	scaffold_6:6130203-6130244(-) (11)	NA	Q9M354	Probable ADP-ribosylation factor GTPase-activating protein AGD6	AT3G53710.2	ARF-GAP domain 6 	LOC_Os03g17020.2	"GTPase-activating protein, putative, expressed"	Medtr7g118270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.49827.1.A1_at	A	A1TS	POPTR_0014s11320	POPTR_0014s11320 (11)	scaffold_14:8420797-8421402(-) (11)	NA	O22899	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G62310.1	RNA helicase family protein 	LOC_Os03g19960.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr1g106350.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.49834.1.S1_at	A	A1TS	POPTR_0009s09000	POPTR_0009s09000 (11)	scaffold_9:8086981-8087289(-) (11)	NA	P93039	Nucleobase-ascorbate transporter 4	AT1G49960.1	Xanthine/uracil permease family protein 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g073630.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.49841.1.A1_at	A	A1TS	POPTR_0006s13790	POPTR_0006s13790 (11)	scaffold_6:11004375-11004849(-) (11)	NA	Q9LSQ3	Transcription factor bHLH82	AT5G58010.1	LJRHL1-like 3 	LOC_Os06g09370.2	"PTF1, putative, expressed"	Medtr8g145720.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.49864.1.S1_at	A	A1TS	POPTR_0002s16240	POPTR_0002s16240 (11)	scaffold_2:12145855-12147271(-) (11)	NA	P42749	Ubiquitin-conjugating enzyme E2 5	AT1G63800.1	ubiquitin-conjugating enzyme 5 	LOC_Os10g31000.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g125340.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.49873.1.A1_at	A	A1TS	POPTR_0014s17100	POPTR_0014s17100 (11)	scaffold_14:13260129-13260734(-) (11)	NA	NA	NA	AT2G04039.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	NA	NA	AC233651_18.1	hypothetical protein AC233651.1 59417-62108 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49881.1.A1_at	A	A1TS	POPTR_0011s02260	POPTR_0011s02260 (11)	scaffold_11:2061328-2061881(+) (11)	NA	Q8LBM2	Protein TIFY 5A	AT1G30135.1	jasmonate-zim-domain protein 8 	NA	NA	Medtr4g154880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49889.1.A1_s_at	A	A1TS	POPTR_0010s14190	POPTR_0010s14190 (11)	scaffold_10:13875940-13876488(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49909.1.A1_at	A	A1TS	POPTR_0019s05310	POPTR_0019s05310 (11)	scaffold_19:5622758-5623150(-) (11)	NA	Q38834	Disease resistance RPP13-like protein 4	AT5G45500.2	RNI-like superfamily protein 	LOC_Os01g58520.1	"disease resistance protein, putative, expressed"	Medtr3g041030.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.49910.1.A1_at	A	A1TS	POPTR_0015s13090	POPTR_0015s13090 (11)	scaffold_15:13191305-13191957(-) (11)	NA	B0X1Q4	CAP10 family protein CPIJ013394	AT5G23850.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os02g42920.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49920.1.S1_at	A	A1TS	POPTR_0002s20520	POPTR_0002s20520 (11)	scaffold_2:16583636-16584563(-) (11)	NA	A0QM57	Putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4873	AT4G02405.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g14350.1	"methyltransferase, putative, expressed"	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.49926.1.A1_at	A	A1TS	POPTR_0001s25960	POPTR_0001s25960 (11)	scaffold_1:25051865-25052218(+) (11)	NA	Q9LUZ4	Zinc finger CCCH domain-containing protein 66	AT5G58620.1	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g079420.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.4993.1.S1_a_at	A	A2TS	POPTR_0001s32120	POPTR_0001s32120 (11)//POPTR_0017s08120 (11)	scaffold_1:30539658-30540286(+) (11)//scaffold_17:6538422-6539051(+) (11)	NA	Q9FKB5	Cyclin-dependent kinase inhibitor 3	AT5G48820.1	inhibitor/interactor with cyclin-dependent kinase 	LOC_Os10g33310.1	"cyclin-dependent kinase inhibitor, putative, expressed"	Medtr7g064470.1	Cyclin-dependent kinase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4993.1.S1_at	A	A1TS	POPTR_0001s32120	POPTR_0001s32120 (11)	scaffold_1:30539613-30540306(+) (11)	NA	Q9FKB5	Cyclin-dependent kinase inhibitor 3	AT5G48820.1	inhibitor/interactor with cyclin-dependent kinase 	LOC_Os10g33310.1	"cyclin-dependent kinase inhibitor, putative, expressed"	Medtr7g064470.1	Cyclin-dependent kinase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4993.2.S1_at	A	A1TS	POPTR_0017s08120	POPTR_0017s08120 (11)	scaffold_17:6538592-6539086(+) (11)	NA	Q9FKB5	Cyclin-dependent kinase inhibitor 3	AT5G48820.1	inhibitor/interactor with cyclin-dependent kinase 	LOC_Os10g33310.1	"cyclin-dependent kinase inhibitor, putative, expressed"	Medtr7g064470.1	Cyclin-dependent kinase inhibitor 	GO:0007050|cell cycle arrest	GO:0004861|cyclin-dependent protein kinase inhibitor activity	GO:0005634|nucleus
PtpAffx.4994.1.S1_at	A	A1TS	POPTR_0004s23750	POPTR_0004s23750 (11)	scaffold_4:22373501-22373985(+) (11)	NA	P42285	Superkiller viralicidic activity 2-like 2	AT1G59760.1	"RNA helicase, ATP-dependent, SK12/DOB1 protein "	LOC_Os12g18140.1	"superkiller viralicidic activity 2-like 2, putative, expressed"	Medtr7g092260.1	"DEAD/DEAH box helicase, N-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.49949.1.S1_at	A	A1TS	POPTR_0014s11380	POPTR_0014s11380 (11)	scaffold_14:8475598-8476245(-) (11)	NA	Q9SIC9	"Pentatricopeptide repeat-containing protein At2g31400, chloroplastic"	AT2G31400.1	genomes uncoupled 1 	LOC_Os12g37550.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015600.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49968.1.A1_at	A	A1MS	POPTR_0002s08480	POPTR_0002s08480 (11)	scaffold_2:5926910-5927205(+) (11)	NA	NA	NA	AT1G48200.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g05670.1	expressed protein	Medtr1g087370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49968.1.A1_s_at	A	A1TS	POPTR_0002s08480	POPTR_0002s08480 (11)	scaffold_2:5926964-5927152(+) (11)	NA	NA	NA	AT1G48200.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g05670.1	expressed protein	Medtr1g087370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49988.1.S1_at	A	A1TS	POPTR_0014s01620	POPTR_0014s01620 (10)	scaffold_14:1516610-1518789(+) (10)	NA	NA	NA	AT5G63905.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g023290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5.2.S1_a_at	A	A3TS	POPTR_0001s04820	POPTR_0001s04850 (11)//POPTR_0001s04840 (11)//POPTR_0001s04820 (11)	scaffold_1:3696773-3697130(-) (11)//scaffold_1:3714465-3714822(-) (11)//scaffold_1:3721262-3721619(-) (11)	POPTR_0001s05050 (7)	P00433	Peroxidase C1A	AT4G08780.1	Peroxidase superfamily protein 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	AC234842_16.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 64674-62215 E EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.50000.1.A1_at	A	A1TS	POPTR_0010s17560	POPTR_0010s17560 (11)	scaffold_10:16100715-16101021(-) (11)	NA	Q8L7F9	"Beta-1,3-galactosyltransferase 15"	AT1G26810.1	galactosyltransferase1 	LOC_Os06g12390.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g044460.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.50006.1.A1_at	A	A1TS	POPTR_0001s04530	POPTR_0001s04530 (11)	scaffold_1:3555388-3555949(+) (11)	NA	Q93W93	F-box/kelch-repeat protein At1g55270	AT1G55270.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g26990.1	"OsFBK23 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g133940.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50017.1.A1_at	A	A1TS	POPTR_0001s44190	POPTR_0001s44190 (11)	scaffold_1:44656559-44657444(+) (11)	NA	Q9FIT9	21.7 kDa class VI heat shock protein	AT5G54660.1	HSP20-like chaperones superfamily protein 	LOC_Os05g42120.1	"heat shock protein, putative, expressed"	Medtr2g096660.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50026.1.A1_at	A	A1TS	POPTR_0013s13920	POPTR_0013s13920 (11)	scaffold_13:14240504-14241063(-) (11)	NA	Q9SKT1	Ethylene-responsive transcription factor ERF053	AT2G20880.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g42585.1	"AP2 domain containing protein, expressed"	Medtr5g071740.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.50031.1.A1_s_at	A	A1TS	POPTR_0002s12140	POPTR_0002s12140 (11)	scaffold_2:9006602-9008033(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50035.1.A1_at	A	A1MS	POPTR_0007s07860	POPTR_0007s07860 (11)	scaffold_7:6297692-6298749(-) (11)	NA	Q9LIH7	Probable S-acyltransferase At3g18620	AT3G18620.1	DHHC-type zinc finger family protein 	LOC_Os06g20400.5	"DHHC zinc finger domain containing protein, expressed"	Medtr4g101410.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.5004.1.S1_at	A	A1TS	POPTR_0011s16810	POPTR_0011s16810 (9)	scaffold_11:18579936-18580466(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50041.2.A1_a_at	A	A2TS	POPTR_0013s07040	POPTR_0013s07040 (11)//POPTR_0093s00230 (10)	scaffold_13:5747118-5748126(-) (11)//scaffold_93:39490-40498(-) (11)	NA	Q8N9R8	Protein SCAI	AT3G03570.1	Protein of unknown function (DUF3550/UPF0682) 	LOC_Os09g40000.2	"AGAP005770-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50042.1.A1_at	A	A1TS	POPTR_0016s06430	POPTR_0016s06430 (11)	scaffold_16:4321658-4322453(-) (11)	NA	Q9M1S8	Probable glutamate carboxypeptidase 2	AT3G54720.1	Peptidase M28 family protein 	LOC_Os03g57660.1	"peptidase, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.50045.1.A1_at	A	A1TS	POPTR_0014s13070	POPTR_0014s13070 (11)	scaffold_14:9614519-9614867(+) (11)	NA	A0JM51	CUGBP Elav-like family member 5	AT4G03110.1	RNA-binding protein-defense related 1 	LOC_Os01g71200.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g136920.1	RNA-binding region RNP-1 (RNA recognition motif); WW/Rsp5/WWP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.5006.1.A1_at	A	A1TS	POPTR_0012s04330	POPTR_0012s04330 (10)	scaffold_12:3557082-3557506(+) (11)	NA	Q8K157	Aldose 1-epimerase	AT3G17940.1	Galactose mutarotase-like superfamily protein 	LOC_Os10g06720.1	"aldose 1-epimerase, putative, expressed"	Medtr6g083370.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.50062.1.A1_at	A	A1TS	POPTR_0001s32760	POPTR_0001s32760 (11)	scaffold_1:31055889-31056729(+) (11)	NA	Q9SL02	DNA repair protein RAD50	AT2G31970.1	DNA repair-recombination protein (RAD50) 	LOC_Os02g29464.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	Medtr3g104840.1	Rad50 zinc hook 	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0016032|viral reproduction	GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0008270|zinc ion binding	NA
PtpAffx.50063.1.S1_at	A	A1TS	POPTR_0011s07320	POPTR_0011s07320 (10)	scaffold_11:8072394-8072695(-) (10)	NA	Q9SIM9	F-box protein ORE9	AT2G42620.1	RNI-like superfamily protein 	LOC_Os06g06050.1	"OsFBL27 - F-box domain and LRR containing protein, expressed"	Medtr4g109790.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50066.1.S1_at	A	A1TS	POPTR_0017s10560	POPTR_0017s10560 (11)	scaffold_17:9995551-9996522(-) (11)	NA	NA	NA	AT3G27470.2	Protein of unknown function (DUF707) 	LOC_Os02g19510.2	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50079.1.A1_at	A	A1TS	POPTR_0007s08440	POPTR_0007s08440 (11)	scaffold_7:7247844-7250079(-) (11)	NA	Q6AYG0	UPF0431 protein C1orf66 homolog	AT1G16650.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os12g41670.1	expressed protein	Medtr2g076710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50090.1.A1_at	A	A1TS	POPTR_0016s09570	POPTR_0016s09570 (9)	scaffold_16:7487082-7487388(+) (11)	NA	Q38834	Disease resistance RPP13-like protein 4	AT3G50950.1	HOPZ-ACTIVATED RESISTANCE 1 	LOC_Os09g11020.1	"NBS-LRR disease resistance protein, putative"	Medtr3g043920.1	"Peptidase aspartic, active site; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.50096.1.S1_at	A	A1TS	POPTR_0008s04540	POPTR_0008s04540 (9)	scaffold_8:2588971-2589176(-) (9)	NA	Q0JHZ2	Zinc finger CCCH domain-containing protein 11	AT2G20280.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g61830.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr6g089260.1	Leucine-rich repeat 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.50111.1.A1_at	A	A1MS	POPTR_0015s06310	POPTR_0015s06310 (10)	scaffold_15:6905202-6905685(+) (10)	NA	Q84M92	Actin-related protein 4	AT1G18450.1	actin-related protein 4 	LOC_Os08g04280.2	"actin, putative, expressed"	Medtr5g075350.3	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.50112.1.A1_at	A	A1TS	POPTR_0010s11470	POPTR_0010s11470 (11)	scaffold_10:11726022-11726394(+) (11)	NA	P47818	Protein CCC1	AT2G01770.1	vacuolar iron transporter 1 	LOC_Os04g38940.1	"integral membrane protein, putative, expressed"	Medtr4g156680.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50118.1.S1_at	A	A1TS	POPTR_0006s23900	POPTR_0006s23900 (11)	scaffold_6:22614529-22615089(-) (11)	NA	Q9LYG9	Uncharacterized protein At5g12080	AT5G12080.3	mechanosensitive channel of small conductance-like 10 	LOC_Os06g10410.1	"uncharacterized mscS family protein, putative, expressed"	Medtr3g139330.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50125.1.A1_at	A	A1TS	POPTR_0009s03040	POPTR_0009s03040 (11)	scaffold_9:3757408-3757722(-) (11)	NA	P0C872	JmjC domain-containing protein 7	AT3G45880.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os09g31050.1	"cytosolic phospholipase A2 beta, putative, expressed"	Medtr5g025210.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5013.1.S1_at	A	A1TS	POPTR_0013s01790	POPTR_0013s01790 (11)	scaffold_13:1019265-1019944(-) (11)	NA	Q8L770	"ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic"	AT1G09130.3	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os03g22430.1	"OsClp5 - Putative Clp protease homologue, expressed"	Medtr7g138460.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.50143.1.A1_at	A	A1MS	POPTR_0013s00750	POPTR_0013s00750 (11)	scaffold_13:376605-377082(+) (11)	NA	Q12873	Chromodomain-helicase-DNA-binding protein 3	AT1G08060.2	ATP-dependent helicase family protein 	LOC_Os06g01320.1	"chromo domain containing protein, expressed"	fpc265_22.1	"Helicase, C-terminal fpc265 101840-115910 E EGN_Mt090430 200"	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.50144.1.A1_at	A	A1TS	POPTR_0006s24920	POPTR_0006s24920 (11)	scaffold_6:23432128-23432365(+) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os05g46395.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50144.2.A1_at	A	A1TS	POPTR_0018s04670	POPTR_0018s04670 (10)	scaffold_18:3954614-3956101(+) (10)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os05g46395.1	expressed protein	Medtr5g067660.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50144.3.A1_a_at	A	A1TS	POPTR_0006s24920	POPTR_0006s24920 (11)	scaffold_6:23426620-23426905(+) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os05g46395.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50152.2.A1_a_at	A	A1TS	POPTR_0006s24170	POPTR_0006s24170 (11)	scaffold_6:22827562-22828538(-) (11)	NA	NA	NA	AT4G33060.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g40050.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.50158.1.A1_at	A	A1TS	POPTR_0002s15640	POPTR_0002s15640 (11)	scaffold_2:11680550-11681109(+) (11)	NA	Q96287	Shaggy-related protein kinase theta	AT4G00720.1	shaggy-like protein kinase 32 	LOC_Os10g37740.1	"CGMC_GSK.9 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g083630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.50160.1.A1_at	A	A1TS	POPTR_0018s09790	POPTR_0018s09790 (10)	scaffold_18:10859464-10862232(-) (10)	NA	NA	NA	AT2G18950.1	homogentisate phytyltransferase 1 	LOC_Os06g44840.1	"prenyltransferase, putative, expressed"	Medtr8g129290.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.50166.1.S1_at	A	A1TS	POPTR_0006s07280	POPTR_0006s07280 (11)	scaffold_6:5235758-5236216(-) (11)	NA	Q14978	Nucleolar and coiled-body phosphoprotein 1	AT5G57120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink). "	LOC_Os12g41930.1	"SRP40, C-terminal domain containing protein, expressed"	Medtr8g129970.1	"Lissencephaly type-1-like homology motif; SRP40, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50167.1.A1_a_at	A	A1TS	POPTR_0006s03980	POPTR_0006s03980 (11)	scaffold_6:2697477-2698644(+) (11)	NA	Q20728	Tubulin-specific chaperone B	AT3G10220.1	tubulin folding cofactor B 	LOC_Os04g59560.1	"tubulin folding cofactor B, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50167.2.S1_at	A	A1TS	POPTR_0016s12960	POPTR_0016s12960 (11)	scaffold_16:12284198-12285474(+) (11)	NA	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT5G01580.1	gamma interferon responsive lysosomal thiol (GILT) reductase family protein 	LOC_Os01g61240.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative"	Medtr4g012060.1	Gamma interferon inducible lysosomal thiol reductase GILT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50168.1.A1_at	A	A1TS	POPTR_0008s14450	POPTR_0008s14450 (11)	scaffold_8:9584766-9584939(+) (11)	NA	NA	NA	AT1G60670.2	Protein of unknown function (DUF3755) 	LOC_Os02g42020.2	expressed protein	Medtr3g025420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50170.1.A1_at	A	A1TS	POPTR_0015s13460	POPTR_0015s13460 (11)	scaffold_15:13400665-13402662(-) (11)	NA	NA	NA	AT5G52220.1	CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os09g12780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50176.2.S1_a_at	A	A1TS	POPTR_0006s12230	POPTR_0006s12230 (11)	scaffold_6:9368298-9369185(-) (11)	NA	Q869T9	Probable ethanolamine kinase A	AT2G26830.1	Protein kinase superfamily protein 	LOC_Os09g26700.1	"choline/ethanolamine kinase, putative, expressed"	Medtr3g005000.1	"Choline kinase, N-terminal; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50179.1.A1_s_at	A	A1TS	POPTR_0018s13410	POPTR_0018s13410 (11)	scaffold_18:13731952-13732368(+) (11)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g130360.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0003676|nucleic acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0008270|zinc ion binding	NA
PtpAffx.50182.1.A1_at	A	A1TS	POPTR_0002s09850	POPTR_0002s09850 (11)	scaffold_2:7073106-7073637(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50186.1.A1_at	A	A1MS	POPTR_0004s23940	POPTR_0004s23940 (11)	scaffold_4:22559643-22559949(-) (11)	NA	P09122	DNA polymerase III subunit gamma/tau	AT2G02480.1	AAA-type ATPase family protein 	LOC_Os12g10670.1	"AAA-type ATPase family protein, putative, expressed"	Medtr2g021690.1	"AAA ATPase; DNA polymerase III clamp loader subunit, C-terminal "	NA	GO:0005524|ATP binding	NA
PtpAffx.50190.2.A1_at	A	A1TS	POPTR_0019s11150	POPTR_0019s11150 (11)	scaffold_19:12524915-12525154(-) (11)	NA	NA	NA	AT4G09510.1	cytosolic invertase 2 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50193.1.A1_at	A	A1TS	POPTR_0006s04280	POPTR_0006s04280 (11)	scaffold_6:2930787-2931064(+) (11)//scaffold_892:1813-2090(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50200.1.A1_at	A	A1MS	POPTR_0025s00700	POPTR_0025s00700 (11)	scaffold_25:367721-367818(+) (11)	POPTR_0027s00390 (6)	Q6NZ09	Proteasomal ubiquitin receptor ADRM1	AT2G26590.3	regulatory particle non-ATPase 13 	LOC_Os05g51640.2	"adhesion regulating molecule family, putative, expressed"	Medtr4g161200.1	Adhesion regulating molecule 	NA	NA	GO:0005737|cytoplasm||GO:0005634|nucleus
PtpAffx.5021.1.S1_at	A	A1TS	POPTR_0014s15940	POPTR_0014s15940 (11)	scaffold_14:12020474-12020986(+) (11)	NA	O74462	Transcription initiation factor TFIID subunit 6	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59 	LOC_Os01g32750.1	"TATA binding protein-associated factor, putative, expressed"	Medtr7g026010.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0051090|regulation of transcription factor activity||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity||GO:0016986|transcription initiation factor activity	GO:0005634|nucleus
PtpAffx.50213.1.S1_at	A	A1TS	POPTR_0001s13650	POPTR_0001s13650 (10)	scaffold_1:10732406-10732801(+) (10)	NA	Q03489	Agamous-like MADS-box protein AGL9 homolog	AT1G24260.2	K-box region and MADS-box transcription factor family protein  	LOC_Os09g32948.1	"OsMADS8 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g147260.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.50217.1.A1_at	A	A1TS	POPTR_0016s04950	POPTR_0016s04950 (11)	scaffold_16:2979553-2981838(-) (11)	NA	A1L0Z4	TBCC domain-containing protein 1	AT3G57890.1	Tubulin binding cofactor C domain-containing protein 	LOC_Os06g41110.1	"tubulin binding cofactor C, putative, expressed"	Medtr7g111480.1	Tubulin binding cofactor C 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5022.1.A1_at	A	A1TS	POPTR_0001s24400	POPTR_0001s24400 (11)	scaffold_1:23689780-23690481(-) (11)	NA	NA	NA	AT3G46450.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os03g60610.3	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr4g078780.1	"Cellular retinaldehyde-binding/triple function, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50236.1.A1_at	A	A1MS	POPTR_0007s07430	POPTR_0007s07430 (9)	scaffold_7:5782613-5783109(+) (11)	NA	P32746	"Dihydroorotate dehydrogenase, mitochondrial"	AT5G23300.1	pyrimidine d 	LOC_Os04g57950.1	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr1g143810.1	Dihydroorotate dehydrogenase 2 	GO:0044281|small molecule metabolic process||GO:0006222|UMP biosynthetic process||GO:0055114|oxidation reduction	GO:0004152|dihydroorotate dehydrogenase activity	NA
PtpAffx.50239.1.A1_at	A	A1TS	POPTR_0013s04270	POPTR_0013s04270 (11)	scaffold_13:2887701-2888013(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50245.1.A1_at	A	A1TS	POPTR_0001s09870	POPTR_0001s09870 (11)	scaffold_1:7622537-7626022(-) (11)	NA	NA	NA	AT5G41560.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os03g03420.1	expressed protein	Medtr7g108480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50247.1.A1_at	A	A3TS	POPTR_0011s11420	POPTR_0011s11420 (11)//POPTR_0011s11440 (11)//POPTR_0256s00210 (9)	scaffold_11:14185045-14185856(+) (11)//scaffold_11:14209456-14210257(+) (11)//scaffold_256:39536-47574(-) (11)	POPTR_0256s00220 (8)	P49332	Probable glutathione S-transferase parC	AT1G17180.1	glutathione S-transferase TAU 25 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50256.1.A1_at	A	A1TS	POPTR_0018s06160	POPTR_0018s06160 (11)	scaffold_18:5806099-5807515(+) (11)	NA	Q54UF8	Probable serine incorporator	AT3G24460.1	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os04g42720.1	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr4g158590.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.50257.1.A1_s_at	A	A1TS	POPTR_0006s03660	POPTR_0006s03660 (11)	scaffold_6:2437306-2437421(-) (11)	NA	Q9ZNZ7	"Ferredoxin-dependent glutamate synthase 1, chloroplastic"	AT5G04140.1	glutamate synthase 1 	LOC_Os07g46460.1	"ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0015930|glutamate synthase activity	NA
PtpAffx.50261.1.A1_s_at	A	A1TS	POPTR_0018s14780	POPTR_0018s14780 (11)	scaffold_18:14861248-14861544(-) (11)	NA	Q9T091	Vacuolar protein sorting-associated protein 26	AT4G27690.1	vacuolar protein sorting 26B 	LOC_Os11g41130.1	"vacuolar protein sorting-associated protein 26, putative, expressed"	NA	NA	GO:0007034|vacuolar transport	NA	GO:0030904|retromer complex
PtpAffx.50262.1.S1_s_at	A	A1TS	POPTR_0004s08120	POPTR_0004s08120 (11)	scaffold_4:6644807-6646123(-) (11)	NA	Q8GUM5	Nicastrin	AT3G52640.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os02g50360.1	"nicalin, putative, expressed"	Medtr3g087260.1	Nicastrin 	GO:0016485|protein processing	NA	GO:0016021|integral to membrane
PtpAffx.50263.1.A1_at	A	A1MS	POPTR_0005s21790	POPTR_0005s21790 (11)	scaffold_5:20875634-20876053(-) (11)	NA	NA	NA	AT1G34000.1	one-helix protein 2 	LOC_Os01g40710.1	"high light inducible protein, putative, expressed"	Medtr1g124760.1	"one-helix protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50265.1.S1_at	A	A1TS	POPTR_0015s09930	POPTR_0015s09930 (11)	scaffold_15:10997304-10997695(-) (11)	NA	Q93Z25	Probable pectate lyase 22	AT5G63180.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50265.1.S1_s_at	A	A1TS	POPTR_0015s09930	POPTR_0015s09930 (11)	scaffold_15:10997285-10997647(-) (11)	NA	Q93Z25	Probable pectate lyase 22	AT5G63180.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50281.1.S1_at	A	A1TS	POPTR_0011s15640	POPTR_0011s15640 (11)	scaffold_11:17730651-17730859(+) (11)	NA	Q9LPI7	NAC domain-containing protein 12	AT1G32770.1	NAC domain containing protein 12 	LOC_Os08g02300.1	"no apical meristem protein, putative, expressed"	Medtr4g041220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.503.1.A1_at	A	A1MS	POPTR_0012s07880	POPTR_0012s07880 (11)	scaffold_12:8831706-8832046(-) (11)	NA	NA	NA	AT5G50090.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g50810.1	expressed protein	Medtr8g125270.1	"T10O24.15, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.503.2.S1_at	A	A1TS	POPTR_0012s07880	POPTR_0012s07880 (11)	scaffold_12:8832323-8832557(-) (11)	NA	NA	NA	AT5G50090.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g50810.1	expressed protein	Medtr8g125270.1	"T10O24.15, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50325.1.A1_at	A	A1TS	POPTR_0010s24610	POPTR_0010s24610 (11)	scaffold_10:20731833-20732190(-) (11)	NA	NA	NA	AT3G54290.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); Has 59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os01g64250.1	"hemerythrin family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50327.1.A1_s_at	A	A1TS	POPTR_0013s11140	POPTR_0013s11140 (11)	scaffold_13:11827852-11827943(-) (11)	NA	O82528	60S ribosomal protein L15	AT4G16720.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.50333.1.S1_s_at	A	A2TS	POPTR_0008s02000	POPTR_0008s02000 (11)//POPTR_0341s00210 (11)	scaffold_341:9903-9951(+) (11)//scaffold_8:956893-956941(+) (11)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50335.1.A1_s_at	A	A1TS	POPTR_0006s10550	POPTR_0006s10550 (11)	scaffold_6:7899349-7900938(-) (11)	NA	P91850	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os11g01600.1	"macrophage migration inhibitory factor, putative, expressed"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5034.2.S1_at	A	A1TS	POPTR_0011s16010	POPTR_0011s16010 (10)	scaffold_11:17986855-17986950(+) (10)	NA	NA	NA	AT1G07090.1	Protein of unknown function (DUF640) 	LOC_Os02g56610.1	"DUF640 domain containing protein, putative, expressed"	Medtr5g080780.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50341.1.A1_at	A	A1TS	POPTR_0002s01840	POPTR_0002s01840 (11)	scaffold_2:984139-985096(-) (11)	NA	Q9XHM1	Eukaryotic translation initiation factor 3 subunit C	AT3G56150.2	eukaryotic translation initiation factor 3C 	LOC_Os02g03080.1	"eukaryotic translation initiation factor 3 subunit C, putative, expressed"	Medtr2g005440.1	"Proteasome component region PCI; Eukaryotic translation initiation factor 3 subunit 8, C-terminal; Eukaryotic translation initiation factor 3 subunit 8, N-terminal; Winged helix repressor DNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	GO:0005852|eukaryotic translation initiation factor 3 complex
PtpAffx.50347.1.S1_at	A	A1TS	POPTR_0004s11110	POPTR_0004s11110 (11)	scaffold_4:9705228-9705609(+) (11)	NA	P48724	Eukaryotic translation initiation factor 5	AT1G77840.1	Translation initiation factor IF2/IF5 	LOC_Os06g48355.1	expressed protein	Medtr7g094130.1	Translation initiation factor IF5; eIF4-gamma/eIF5/eIF2-epsilon 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.50349.1.A1_at	A	A1TS	POPTR_0005s08670	POPTR_0005s08670 (11)	scaffold_5:6031455-6032863(-) (11)	NA	NA	NA	AT5G09960.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os10g26540.1	expressed protein	Medtr3g144730.1	"4D11_4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50349.2.S1_s_at	A	A1TS	POPTR_0007s06610	POPTR_0007s06610 (11)	scaffold_7:5026503-5027958(-) (11)	NA	NA	NA	AT5G09960.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g07380.1	expressed protein	Medtr3g144730.1	"4D11_4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50358.1.A1_s_at	A	A1TS	POPTR_0009s09330	POPTR_0009s09330 (11)	scaffold_9:8303456-8303877(+) (11)	NA	Q9UBN7	Histone deacetylase 6	AT2G14830.2	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os12g32374.1	"histone deacetylase 6, putative, expressed"	Medtr5g005200.1	"Histone deacetylase superfamily; Zinc finger, UBP-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.5036.1.A1_at	A	A1TS	POPTR_0015s14930	POPTR_0015s14930 (11)	scaffold_15:14327460-14336472(+) (11)	NA	NA	NA	AT3G58480.1	calmodulin-binding family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5036.2.A1_at	A	A1TS	POPTR_0015s14910	POPTR_0015s14910 (9)	scaffold_15:14327160-14327443(+) (9)	NA	NA	NA	AT3G58480.1	calmodulin-binding family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50368.2.A1_a_at	A	A1TS	POPTR_0010s26120	POPTR_0010s26120 (11)	scaffold_10:21463551-21464255(+) (11)	NA	Q757A5	Mitochondrial intermembrane space import and assembly protein 40	AT5G23395.1	Cox19-like CHCH family protein 	LOC_Os04g44550.1	"CHCH domain containing protein, expressed"	Medtr8g024980.1	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50371.1.A1_at	A	A1TS	POPTR_0006s28560	POPTR_0006s28560 (11)	scaffold_6:26236031-26236232(+) (11)	NA	Q9SB75	Probable xyloglucan glycosyltransferase 5	AT4G31590.1	Cellulose-synthase-like C5 	LOC_Os08g15420.1	"CSLC3 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50371.1.A1_s_at	A	A1TS	POPTR_0006s28560	POPTR_0006s28560 (11)	scaffold_6:26236061-26236515(+) (11)	NA	Q9SB75	Probable xyloglucan glycosyltransferase 5	AT4G31590.1	Cellulose-synthase-like C5 	LOC_Os08g15420.1	"CSLC3 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50375.1.A1_at	A	A1TS	POPTR_0016s15030	POPTR_0016s15030 (11)	scaffold_16:14071039-14071085(+) (11)	NA	NA	NA	AT5G01010.1	CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 172 Blast hits to 172 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os05g24020.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr8g005030.1	"Proteinase inhibitor I4, serpin; emp24/gp25L/p24 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50378.1.A1_at	A	A1TS	POPTR_0015s14510	POPTR_0015s14510 (11)	scaffold_15:14069749-14070304(-) (11)	NA	P49200	40S ribosomal protein S20-1	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g14530.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.5039.1.A1_at	A	A1MS	POPTR_0001s06490	POPTR_0001s06490 (10)	scaffold_1:5004280-5004480(+) (10)	NA	NA	NA	NA	NA	LOC_Os01g16620.5	expressed protein	Medtr3g006210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.504.1.A1_at	A	A1TS	POPTR_0006s16270	POPTR_0006s16270 (11)	scaffold_6:14198636-14199027(-) (11)	NA	Q941B6	Probable ubiquitin-conjugating enzyme E2 37	AT3G24515.1	ubiquitin-conjugating enzyme 37 	LOC_Os01g42040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr3g083600.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.50408.1.A1_s_at	A	A2TS	POPTR_0004s22390	POPTR_0009s01380 (11)//POPTR_0004s22390 (11)	scaffold_4:21314689-21315261(+) (11)//scaffold_9:1624727-1625315(-) (11)	NA	Q9ZUU9	ABC transporter G family member 3	AT2G28070.1	ABC-2 type transporter family protein 	LOC_Os03g64200.1	"ABC-2 type transporter, putative, expressed"	AC235487_18.1	ABC transporter related AC235487.1 100187-95222 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.5041.1.A1_at	A	A1MA	POPTR_0006s22170	POPTR_0006s22170 (9)	scaffold_6:21215772-21216138(+) (9)	NA	Q8GXE9	HVA22-like protein j	AT2G36020.1	HVA22-like protein J 	LOC_Os02g02920.1	"HVA22, putative, expressed"	Medtr3g156300.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50415.1.A1_at	A	A1TS	POPTR_0001s45860	POPTR_0001s45860 (11)	scaffold_1:46364014-46364527(+) (11)	NA	Q54IK2	Transmembrane protein 120 homolog	AT4G10430.3	TMPIT-like protein 	LOC_Os02g01720.1	"transmembrane protein 120A, putative, expressed"	Medtr1g146830.1	TMPIT-like 	NA	NA	GO:0016021|integral to membrane
PtpAffx.50430.1.S1_at	A	A1TS	POPTR_0018s13080	POPTR_0018s13080 (9)	scaffold_18:13535976-13536948(-) (9)	NA	NA	NA	AT5G25360.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). 	LOC_Os02g10720.1	expressed protein	Medtr8g120490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50432.1.A1_at	A	A1TS	POPTR_0001s21400	POPTR_0001s21400 (11)	scaffold_1:19834235-19834698(+) (11)	NA	P44176	Protein trpH	AT2G13840.1	Polymerase/histidinol phosphatase-like 	LOC_Os03g09180.1	"trpH, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	NA
PtpAffx.50438.1.A1_at	A	A1TS	POPTR_0009s02200	POPTR_0009s02200 (9)	scaffold_9:2907996-2908221(-) (9)	NA	Q9SJF0	Serine/threonine-protein phosphatase BSL2	AT1G08420.1	BRI1 suppressor 1 (BSU1)-like 2 	LOC_Os12g42310.1	"serine/threonine-protein phosphatase BSL2, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.50462.1.A1_at	A	A1TS	POPTR_0007s04530	POPTR_0007s04530 (11)	scaffold_7:2818314-2818550(+) (11)	NA	Q8RWD6	F-box protein At5g39450	AT5G39450.1	F-box family protein 	LOC_Os08g01430.1	"OsFBX260 - F-box domain containing protein, expressed"	Medtr3g142910.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50465.1.A1_at	A	A1TS	POPTR_0002s06730	POPTR_0002s06730 (9)	scaffold_2:4531805-4531934(-) (9)	NA	Q6NPF9	"Thioredoxin Y1, chloroplastic"	AT1G76760.1	thioredoxin Y1 	LOC_Os01g73234.2	"thioredoxin, putative, expressed"	Medtr1g125070.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.50472.1.A1_at	A	A1TS	POPTR_0008s09950	POPTR_0008s09950 (11)	scaffold_8:6158138-6159287(-) (11)	NA	Q5RD67	Solute carrier family 25 member 44	AT5G15640.1	Mitochondrial substrate carrier family protein 	LOC_Os01g22600.1	"mitochondrial carrier protein, putative, expressed"	Medtr2g036920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50473.1.A1_at	A	A1TS	POPTR_0010s18230	POPTR_0010s18230 (11)	scaffold_10:16571099-16572775(+) (11)	NA	Q7TNB8	Protein strawberry notch homolog 2	AT1G79350.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g52020.1	"PHD-finger domain containing protein, putative, expressed"	Medtr6g093190.1	"EMB1135 ; DNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50479.1.A1_at	A	A1TS	POPTR_0002s23750	POPTR_0002s23750 (11)	scaffold_2:21256645-21258801(-) (11)	NA	NA	NA	AT3G23740.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14120.1); Has 155 Blast hits to 130 proteins in 48 species: Archae - 0; Bacteria - 16; Metazoa - 19; Fungi - 48; Plants - 47; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). "	LOC_Os01g01170.1	expressed protein	Medtr4g132870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50481.1.S1_at	A	A1MS	POPTR_0018s02860	POPTR_0018s02860 (10)	scaffold_18:2517734-2518468(+) (10)	NA	Q9ZVR5	Putative F-box protein PP2-B2	AT2G02250.1	phloem protein 2-B2 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr1g092930.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50484.1.A1_at	A	A1MS	POPTR_0010s23365	POPTR_0010s23365 (11)	scaffold_10:19971085-19971575(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50488.1.A1_at	A	A1TS	POPTR_0012s08840	POPTR_0012s08840 (11)	scaffold_12:9916402-9917208(+) (11)	NA	Q5JME8	Protein DEHYDRATION-INDUCED 19 homolog 5	AT1G56280.1	drought-induced 19 	LOC_Os01g73960.1	"drought induced 19 protein, putative, expressed"	Medtr1g100290.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50494.1.A1_at	A	A1TS	POPTR_0006s02840	POPTR_0006s02840 (11)	scaffold_6:1785794-1786928(-) (11)	NA	Q93YF5	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1"	AT1G73100.1	SU(VAR)3-9 homolog 3 	LOC_Os05g41172.2	"histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed"	Medtr7g105180.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.505.1.A1_a_at	A	A1TS	POPTR_0009s09400	POPTR_0009s09400 (11)	scaffold_9:8332921-8333141(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.505.1.A1_at	A	A1MS	POPTR_0009s09400	POPTR_0009s09400 (11)	scaffold_9:8332853-8333395(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.505.2.A1_a_at	A	A1TS	POPTR_0009s09400	POPTR_0009s09400 (10)	scaffold_9:8332935-8335413(-) (10)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50503.1.A1_s_at	A	A5TS	POPTR_0006s28640	POPTR_0006s29070 (11)//POPTR_0006s28700 (11)//POPTR_0006s28640 (11)//POPTR_0006s28660 (11)//POPTR_0006s28900 (11)	scaffold_6:26264084-26264246(-) (11)//scaffold_6:26287106-26287268(-) (11)//scaffold_6:26312006-26312168(-) (11)//scaffold_6:26438683-26438845(-) (11)//scaffold_6:26548658-26548820(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g25740.1	"powdery mildew resistance protein PM3F, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.50507.1.A1_s_at	A	A1TS	POPTR_0011s09510	POPTR_0011s09510 (11)	scaffold_11:11805032-11807847(-) (11)	NA	NA	NA	AT5G55290.2	"ATPase, V0 complex, subunit E "	NA	NA	Medtr3g076670.2	ATP synthase subunit H 	GO:0015991|ATP hydrolysis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033179|""proton-transporting V-type ATPase, V0 domain"""
PtpAffx.50509.1.A1_at	A	A1TS	POPTR_0008s10690	POPTR_0008s10690 (11)	scaffold_8:6696904-6709985(-) (11)	NA	Q6IN85	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	AT3G06670.1	binding 	LOC_Os01g23590.1	"suppressor of Mek, putative, expressed"	Medtr8g137830.1	Protein of unknown function DUF625 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5051.1.S1_at	A	A1TS	POPTR_0014s02520	POPTR_0014s02520 (11)	scaffold_14:2091412-2091824(+) (11)	NA	NA	NA	AT5G52010.1	C2H2-like zinc finger protein 	LOC_Os06g07020.1	"ZOS6-01 - C2H2 zinc finger protein, expressed"	Medtr1g019990.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.50517.1.S1_at	A	A1TS	POPTR_0011s00340	POPTR_0011s00340 (11)	scaffold_11:108207-109250(-) (10)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT4G21200.1	gibberellin 2-oxidase 8 	LOC_Os02g41954.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr5g005780.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.50521.1.A1_s_at	A	A1TS	POPTR_0009s07280	POPTR_0009s07280 (11)	scaffold_9:6839789-6839899(+) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os12g04020.1	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.1	Hydroxymethylglutaryl-coenzyme A lyase active site 	NA	GO:0003824|catalytic activity	NA
PtpAffx.50533.1.A1_at	A	A1MS	POPTR_0008s11740	POPTR_0008s11740 (11)	scaffold_8:7517083-7517535(-) (11)	NA	Q9C6L8	Aluminum-activated malate transporter 4	AT1G25480.1	Aluminium activated malate transporter family protein 	LOC_Os02g49790.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50533.1.A1_s_at	A	A1TS	POPTR_0008s11740	POPTR_0008s11740 (11)	scaffold_8:7517201-7517616(-) (11)	NA	Q9C6L8	Aluminum-activated malate transporter 4	AT1G25480.1	Aluminium activated malate transporter family protein 	LOC_Os02g49790.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50534.1.A1_s_at	A	A1TS	POPTR_0003s20020	POPTR_0003s20020 (11)	scaffold_3:18644689-18646457(-) (11)	NA	O60306	Intron-binding protein aquarius	AT2G38770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g26960.1	"intron-binding protein aquarius, putative, expressed"	Medtr1g046610.1	"Intron-binding protein aquarius, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50548.1.A1_at	A	A1MS	POPTR_0014s04660	POPTR_0014s04660 (11)	scaffold_14:3557149-3557485(+) (11)	NA	Q8BYR1	Leucine carboxyl methyltransferase 2	AT1G02100.1	Leucine carboxyl methyltransferase 	LOC_Os06g04820.1	"leucine carboxyl methyltransferase 1, putative, expressed"	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.50548.2.S1_s_at	A	A1TS	POPTR_0014s04660	POPTR_0014s04660 (11)	scaffold_14:3556365-3558244(+) (11)	NA	Q8BYR1	Leucine carboxyl methyltransferase 2	AT1G02100.1	Leucine carboxyl methyltransferase 	LOC_Os06g04820.1	"leucine carboxyl methyltransferase 1, putative, expressed"	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.50551.1.A1_at	A	A1MS	POPTR_0015s12910	POPTR_0015s12910 (10)	scaffold_15:13081706-13083495(-) (10)	NA	NA	NA	AT4G25610.1	C2H2-like zinc finger protein 	LOC_Os09g39660.2	"ZOS9-21 - C2H2 zinc finger protein, expressed"	Medtr1g126780.1	hypothetical protein 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.50562.1.A1_a_at	A	A2TS	POPTR_0001s25400	POPTR_0009s04490 (11)//POPTR_0001s25400 (11)	scaffold_1:24531601-24531973(-) (11)//scaffold_9:4838994-4839356(-) (11)	NA	NA	NA	AT5G52370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g27960.1	expressed protein	Medtr2g117430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50562.3.A1_at	A	A1TS	POPTR_0001s25400	POPTR_0001s25400 (10)	scaffold_1:24529854-24530119(-) (10)	NA	NA	NA	AT5G52370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g27960.1	expressed protein	Medtr2g117430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50577.1.A1_at	A	A1TS	POPTR_0017s02750	POPTR_0017s02750 (11)	scaffold_17:1960335-1960758(-) (11)	NA	NA	NA	AT5G37550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g087370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50589.1.A1_at	A	A1TS	POPTR_0008s20540	POPTR_0008s20540 (11)	scaffold_8:14316492-14316984(+) (11)	NA	NA	NA	AT1G19485.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g27140.1	"AT hook motif family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5060.1.A1_at	A	A1TS	POPTR_0013s11220	POPTR_0013s11220 (11)	scaffold_13:11900475-11900923(+) (11)	POPTR_0019s10910 (6)	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT1G22610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g59520.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5061.1.A1_s_at	A	A1TS	POPTR_0013s12930	POPTR_0013s12930 (11)	scaffold_13:13537066-13538861(-) (11)	NA	Q04957	DNA polymerase I	AT3G52050.4	5'-3' exonuclease family protein 	LOC_Os03g12610.1	"DNA polymerase I, putative, expressed"	Medtr4g128630.1	5-3 exonuclease 	NA	GO:0008409|5'-3' exonuclease activity||GO:0003677|DNA binding	NA
PtpAffx.50612.1.A1_at	A	A1MS	POPTR_0015s12710	POPTR_0015s12710 (11)	scaffold_15:12945984-12946475(+) (11)	NA	Q5RCV3	Nibrin	AT3G02680.1	nijmegen breakage syndrome 1 	LOC_Os10g34580.2	"FHA domain containing protein, putative, expressed"	Medtr5g084040.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50616.1.A1_at	A	A1TS	POPTR_0017s13000	POPTR_0017s13000 (11)	scaffold_17:13166454-13166948(-) (11)	NA	Q9LMX5	Ninja-family protein AFP2	AT1G13740.1	ABI five binding protein 2 	LOC_Os03g11550.2	"protein of unknown function DUF1675 domain containing protein, expressed"	Medtr5g048030.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50620.1.S1_at	A	A1TS	POPTR_0010s15970	POPTR_0010s15970 (11)	scaffold_10:15033246-15033660(-) (11)	NA	P81391	Myb-related protein 305	AT3G06490.1	myb domain protein 108 	LOC_Os05g04210.1	"MYB family transcription factor, putative, expressed"	Medtr2g037450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50628.1.A1_at	A	A1TS	POPTR_0015s11580	POPTR_0015s11580 (11)	scaffold_15:12146964-12147642(+) (11)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT4G25050.1	acyl carrier protein 4 	LOC_Os11g31900.1	"acyl carrier protein, putative, expressed"	Medtr4g152090.1	Acyl carrier protein (ACP) 	NA	GO:0048037|cofactor binding	NA
PtpAffx.50634.1.A1_s_at	A	A1TS	POPTR_0011s12890	POPTR_0011s12890 (11)	scaffold_11:15598528-15599043(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g095790.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.50651.1.A1_x_at	A	A1TS	POPTR_0009s15160	POPTR_0009s15160 (11)	scaffold_9:11769457-11770940(+) (11)	NA	Q6V9I6	Histone deacetylase HDT1	AT3G44750.2	histone deacetylase 3 	LOC_Os05g51830.1	"ZOS5-12 - C2H2 zinc finger protein, expressed"	Medtr4g073420.1	"Histone deacetylase HDT1, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.50651.2.A1_at	A	A1MS	POPTR_0009s15160	POPTR_0009s15160 (9)	scaffold_9:11770738-11771043(+) (11)	NA	Q6V9I6	Histone deacetylase HDT1	AT3G44750.2	histone deacetylase 3 	LOC_Os05g51830.1	"ZOS5-12 - C2H2 zinc finger protein, expressed"	Medtr4g073420.1	"Histone deacetylase HDT1, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.50674.1.A1_a_at	A	A1TS	POPTR_0018s04960	POPTR_0018s04960 (11)	scaffold_18:4405674-4407178(+) (11)	NA	Q9GZP4	UPF0424 protein C1orf128	AT2G25950.1	Protein of unknown function (DUF1000) 	LOC_Os01g37832.1	"thioredoxin, putative, expressed"	Medtr2g021920.1	Protein of unknown function DUF1000 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50689.1.A1_at	A	A1TS	POPTR_0001s26320	POPTR_0001s26320 (11)	scaffold_1:25370220-25370322(-) (11)	NA	Q9UBL3	Set1/Ash2 histone methyltransferase complex subunit ASH2	AT1G51450.1	TRAUCO 	LOC_Os12g04930.1	"ASH-like SPRY domain containing protein, putative, expressed"	Medtr4g104590.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.507.1.S1_at	A	A1TS	POPTR_0001s27370	POPTR_0001s27370 (11)	scaffold_1:26267874-26268377(+) (11)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.3	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.5070.1.A1_at	A	A1TS	POPTR_0007s12940	POPTR_0007s12940 (11)	scaffold_7:13141063-13142181(+) (11)	NA	Q0IIS3	Epoxide hydrolase 3	AT2G18360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g44960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g093180.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50700.1.S1_s_at	A	A2TS	POPTR_0016s05410	POPTR_0016s05410 (11)//POPTR_0006s05240 (9)	scaffold_16:3344392-3344542(-) (11)//scaffold_6:3710085-3710121(+) (9)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.1	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.50701.1.A1_at	A	A1MS	POPTR_0006s25890	POPTR_0006s25890 (11)	scaffold_6:24239180-24239497(-) (11)	NA	Q9CAN0	"Pentatricopeptide repeat-containing protein At1g63130, mitochondrial"	AT1G63130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g40020.1	"PPR repeat containing protein, expressed"	Medtr3g080270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50711.1.A1_at	A	A1TS	POPTR_0008s11120	POPTR_0008s11120 (11)	scaffold_8:7024667-7024720(-) (11)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os09g29930.2	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.50719.1.S1_s_at	A	A1TS	POPTR_0008s04670	POPTR_0008s04670 (11)	scaffold_8:2678738-2679226(-) (11)	NA	Q9LHJ9	Probable protein phosphatase 2C 38	AT3G12620.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr1g146560.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5072.1.S1_at	A	A1TS	POPTR_0002s19130	POPTR_0002s19130 (11)	scaffold_2:15058918-15059422(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50721.1.A1_s_at	A	A1TS	POPTR_0003s10450	POPTR_0003s10450 (11)	scaffold_3:11425774-11426798(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT1G61590.1	Protein kinase superfamily protein 	LOC_Os03g24930.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g026500.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.50725.1.A1_at	A	A1TS	POPTR_0002s25070	POPTR_0002s25070 (11)	scaffold_2:22265284-22265668(+) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT3G07390.1	auxin-responsive family protein 	LOC_Os08g41290.1	"AIR12, putative, expressed"	Medtr7g046190.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50727.1.A1_at	A	A1TS	POPTR_0005s08200	POPTR_0005s08200 (11)	scaffold_5:5649895-5650745(-) (11)	NA	NA	NA	AT4G39690.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane protein Mitofilin (InterPro:IPR019133); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g54410.1	expressed protein	Medtr4g140510.1	hypothetical protein 	NA	NA	GO:0031305|integral to mitochondrial inner membrane
PtpAffx.5073.1.A1_at	A	A1TS	POPTR_0007s13400	POPTR_0007s13400 (11)	scaffold_7:13505528-13505673(-) (11)	NA	Q2HJ56	Periodic tryptophan protein 1 homolog	AT4G18905.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g69970.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g105580.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50734.1.A1_at	A	A1MS	POPTR_0008s15360	POPTR_0008s15360 (9)	scaffold_8:10233511-10234052(-) (9)	NA	Q0WSH6	Pentatricopeptide repeat-containing protein At4g14850	AT4G14850.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g37330.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr5g095400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5074.1.A1_at	A	A1TS	POPTR_0015s13050	POPTR_0015s13050 (11)	scaffold_15:13174359-13174771(+) (11)	NA	NA	NA	AT5G52390.1	PAR1 protein 	NA	NA	Medtr1g127100.1	PAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50747.1.A1_at	A	A1MS	POPTR_0011s00940	POPTR_0011s00940 (11)	scaffold_11:477007-484549(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT3G05660.1	receptor like protein 33 	LOC_Os12g11930.1	"disease resistance protein SlVe2 precursor, putative, expressed"	Medtr5g048840.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.50749.1.A1_at	A	A2TS	POPTR_0002s13830	POPTR_0014s04650 (11)//POPTR_0002s13830 (11)	scaffold_14:3546852-3547818(-) (11)//scaffold_2:10244316-10245268(-) (11)	NA	Q94JU3	COP9 signalosome complex subunit 7	AT1G02090.2	Proteasome component (PCI) domain protein 	LOC_Os07g30840.3	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50753.1.A1_s_at	A	A1TS	POPTR_0017s04900	POPTR_0017s04900 (11)	scaffold_17:3766628-3767844(+) (11)	NA	O94653	Ribosome biogenesis protein BMS1 homolog	AT1G06720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g21530.1	"AARP2CN domain containing protein, expressed"	Medtr4g092630.2	AARP2CN 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
PtpAffx.50757.1.A1_at	A	A1TS	POPTR_0004s15220	POPTR_0004s15220 (11)	scaffold_4:15869733-15870757(-) (11)	NA	Q940D0	Two-component response regulator ARR1	AT2G03500.1	Homeodomain-like superfamily protein 	LOC_Os03g55590.1	"MYB family transcription factor, putative, expressed"	Medtr4g129010.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50766.1.A1_at	A	A1TS	POPTR_0001s47120	POPTR_0001s47120 (10)	scaffold_1:47434587-47434903(+) (10)	NA	Q9SA72	Probable receptor-like protein kinase At1g30570	AT1G30570.1	hercules receptor kinase 2 	LOC_Os04g52860.1	"TKL_IRAK_CrRLK1L-1.9 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr2g129760.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.50767.1.S1_at	A	A1TS	POPTR_0004s23990	POPTR_0004s23990 (11)	scaffold_4:22625717-22626436(+) (11)	NA	NA	NA	AT5G49800.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os11g14070.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5077.1.A1_s_at	A	A1TS	POPTR_0011s09480	POPTR_0011s09480 (11)	scaffold_11:11743119-11743955(-) (11)	NA	P48528	Serine/threonine-protein phosphatase PP-X isozyme 2	AT5G55260.1	protein phosphatase X 2 	LOC_Os09g11230.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr5g101430.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.5077.2.S1_a_at	A	A1TS	POPTR_0001s36920	POPTR_0001s36920 (9)	scaffold_1:35718979-35719259(+) (9)	NA	P48528	Serine/threonine-protein phosphatase PP-X isozyme 2	AT5G55260.1	protein phosphatase X 2 	LOC_Os09g11230.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr5g101430.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.50778.1.A1_at	A	A1TS	POPTR_0001s28040	POPTR_0001s28040 (11)	scaffold_1:26845415-26845659(+) (11)	NA	Q9C635	Heat stress transcription factor B-4	AT1G46264.1	heat shock transcription factor  B4 	LOC_Os03g25120.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g096270.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.5078.1.S1_at	A	A1TS	POPTR_0006s02080	POPTR_0006s02080 (11)	scaffold_6:1334138-1334679(-) (11)	NA	NA	NA	AT4G16380.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr8g148830.1	Heavy metal transport/detoxification protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5078.3.A1_at	A	A1TS	POPTR_0006s02090	POPTR_0006s02090 (11)	scaffold_6:1186294-1186336(-) (11)//scaffold_6:1259311-1259353(-) (11)//scaffold_6:1356533-1356575(-) (11)	NA	NA	NA	AT4G16380.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr8g148830.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.5078.6.S1_a_at	A	A6TS	POPTR_0006s02030	POPTR_0006s02130 (10)//POPTR_0006s02090 (10)//POPTR_0006s02060 (10)//POPTR_0006s02030 (10)//POPTR_0006s02050 (10)//POPTR_0006s02040 (10)	scaffold_6:1259714-1259747(-) (10)//scaffold_6:1282036-1282069(-) (10)//scaffold_6:1306113-1306146(-) (10)//scaffold_6:1313884-1313917(-) (10)//scaffold_6:1356936-1356969(-) (10)//scaffold_6:1379332-1379365(-) (10)	POPTR_0006s01960 (7)	NA	NA	AT4G16380.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr8g148830.1	Heavy metal transport/detoxification protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50781.1.S1_at	A	A1TS	POPTR_0019s04210	POPTR_0019s04210 (11)	scaffold_19:4306961-4307193(+) (11)	NA	Q5S2C3	Protein PIR	AT5G18410.2	transcription activators 	LOC_Os03g05020.1	"PIR, putative, expressed"	Medtr7g143220.1	Cytoplasmic fragile X mental retardation protein interacting protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50789.1.A1_at	A	A1TS	POPTR_0001s21310	POPTR_0001s21310 (11)	scaffold_1:19695807-19695996(-) (11)//scaffold_701:9847-10036(-) (11)	NA	Q9FY75	Potassium transporter 7	AT5G09400.1	K+ uptake permease 7 	LOC_Os07g32530.1	"potassium transporter, putative, expressed"	Medtr2g008870.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.50797.1.A1_at	A	A1TS	POPTR_0011s09880	POPTR_0011s09880 (11)	scaffold_11:12328618-12328949(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50799.1.A1_at	A	A1TS	POPTR_0007s14600	POPTR_0007s14600 (11)	scaffold_7:14358166-14359669(+) (11)	NA	Q2TA14	Lysosomal Pro-X carboxypeptidase	AT5G65760.1	Serine carboxypeptidase S28 family protein 	LOC_Os01g56150.1	"OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.50800.1.S1_at	A	A1TS	POPTR_0009s15040	POPTR_0009s15040 (11)	scaffold_9:11658451-11658955(+) (11)	NA	NA	NA	AT3G44716.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr4g073180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50802.1.A1_at	A	A1TS	POPTR_0005s17060	POPTR_0005s17060 (11)	scaffold_5:14156236-14156679(-) (11)	NA	Q9C9R3	TRM112-like protein At1g78190	AT1G78190.1	Trm112p-like protein 	LOC_Os07g43020.1	"TRM112, putative, expressed"	Medtr2g034350.1	Protein of unknown function DUF343 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50809.1.A1_at	A	A1TS	POPTR_0015s03140	POPTR_0015s03140 (11)	scaffold_15:2686972-2687607(-) (11)	NA	A1YKT1	Transcription factor TCP18	AT3G18550.2	TCP family transcription factor  	LOC_Os03g49880.1	"TCP family transcription factor, putative, expressed"	AC233675_3.1	TCP transcription factor AC233675.1 11574-12645 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50813.1.A1_at	A	A1TA	POPTR_0010s21900	POPTR_0010s21900 (9)	scaffold_10:19009898-19010308(+) (9)	NA	Q99685	Monoglyceride lipase	AT2G39420.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g16180.1	"lipase, putative, expressed"	Medtr1g108370.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5082.1.A1_at	A	A1TS	POPTR_0004s22550	POPTR_0004s22550 (10)	scaffold_4:21412983-21415241(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50822.1.A1_at	A	A1TS	POPTR_0010s08370	POPTR_0010s08370 (11)	scaffold_10:9310556-9312065(-) (11)	NA	Q8L7R5	UPF0497 membrane protein At3g23200	AT3G23200.1	Uncharacterised protein family (UPF0497) 	LOC_Os09g07480.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g018930.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50827.1.A1_at	A	A1MS	POPTR_0014s01720	POPTR_0014s01720 (10)	scaffold_14:1606756-1607152(-) (10)	NA	Q9H1I8	Activating signal cointegrator 1 complex subunit 2	AT1G27752.1	Ubiquitin system component Cue protein 	LOC_Os03g10750.1	"CUE domain containing protein, expressed"	Medtr1g023480.1	"T22C5.20, related "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.50848.1.A1_at	A	A1TS	POPTR_0012s05150	POPTR_0012s05150 (11)	scaffold_12:4657633-4657949(+) (11)	NA	NA	NA	AT3G18295.1	Protein of unknown function (DUF1639) 	LOC_Os01g49410.1	expressed protein	Medtr6g027950.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50850.1.A1_at	A	A1TS	POPTR_0002s07770	POPTR_0002s07770 (11)	scaffold_2:5321824-5322544(-) (11)	NA	Q8CFV9	Riboflavin kinase	AT4G21470.1	riboflavin kinase/FMN hydrolase 	LOC_Os10g32730.1	"haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed"	Medtr4g125160.2	Haloacid dehalogenase-like hydrolase 	GO:0009231|riboflavin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0008531|riboflavin kinase activity	NA
PtpAffx.50854.1.A1_at	A	A1TS	POPTR_0002s07250	POPTR_0002s07250 (10)	scaffold_2:4952543-4952987(+) (11)	NA	NA	NA	AT1G69210.1	Uncharacterised protein family UPF0090 	LOC_Os04g35760.1	expressed protein	Medtr5g047630.1	Protein of unknown function DUF150 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50866.1.A1_at	A	A1TS	POPTR_0004s04190	POPTR_0004s04190 (10)	scaffold_4:3013401-3013944(+) (10)	NA	P32375	Allantoinase	AT4G04955.1	allantoinase 	LOC_Os04g58390.1	"allantoinase, putative, expressed"	Medtr2g014750.3	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.50866.2.A1_at	A	A1TS	POPTR_0004s04190	POPTR_0004s04190 (11)	scaffold_4:3014797-3014917(+) (11)	NA	P32375	Allantoinase	AT4G04955.1	allantoinase 	LOC_Os04g58390.1	"allantoinase, putative, expressed"	Medtr2g014750.3	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.50866.2.A1_s_at	A	A1TS	POPTR_0004s04190	POPTR_0004s04190 (11)	scaffold_4:3013400-3014740(+) (11)	NA	P32375	Allantoinase	AT4G04955.1	allantoinase 	LOC_Os04g58390.1	"allantoinase, putative, expressed"	Medtr2g014750.3	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.50868.1.A1_at	A	A1TS	POPTR_0004s20850	POPTR_0004s20850 (11)	scaffold_4:20230394-20230800(+) (11)	NA	NA	NA	AT2G27080.2	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os12g03370.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g094840.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.5087.1.A1_at	A	A1TS	POPTR_0009s12070	POPTR_0009s12070 (11)	scaffold_9:9917149-9917854(+) (11)	NA	P52578	Isoflavone reductase homolog	AT4G39230.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.50871.1.A1_at	A	A1TS	POPTR_0002s11450	POPTR_0002s11450 (11)	scaffold_2:8490026-8490732(-) (11)	NA	Q06538	Uncharacterized membrane protein YLR241W	AT1G58520.1	"lipases;hydrolases, acting on ester bonds "	LOC_Os12g43720.1	"early-responsive to dehydration protein-related, putative, expressed"	Medtr6g013380.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.50892.1.A1_at	A	A1TS	POPTR_0001s35650	POPTR_0001s35650 (11)	scaffold_1:33984593-33985312(-) (11)	NA	Q8VZV7	Probable methyltransferase PMT9	AT5G14430.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g47294.1	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.50897.1.S1_at	A	A1TS	POPTR_0017s05860	POPTR_0017s05860 (10)	scaffold_17:4548801-4549287(-) (10)	NA	O22845	Calmodulin-like protein 5	AT2G43290.1	Calcium-binding EF-hand family protein 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr2g118470.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50897.2.S1_at	A	A1TS	POPTR_0007s01960	POPTR_0007s01960 (11)	scaffold_7:1110299-1110615(-) (11)	NA	O22845	Calmodulin-like protein 5	AT2G43290.1	Calcium-binding EF-hand family protein 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr2g118470.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5090.1.A1_at	A	A1TS	POPTR_0001s08090	POPTR_0001s08090 (11)	scaffold_1:6161421-6162155(+) (11)	NA	NA	NA	AT1G12400.1	"Nucleotide excision repair, TFIIH, subunit TTDA "	LOC_Os07g38600.1	"REX1 DNA Repair family protein, expressed"	Medtr5g067730.1	REX1 DNA Repair 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding	NA
PtpAffx.50901.1.S1_at	A	A1TS	POPTR_0003s11980	POPTR_0003s11980 (9)	scaffold_3:12686224-12686398(+) (9)	NA	Q2KJ22	Protein FAM63A	AT4G11860.1	Protein of unknown function (DUF544)      	LOC_Os06g49800.1	"ubiquitin interaction motif family protein, expressed"	Medtr5g011220.1	Protein of unknown function DUF544 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50902.1.S1_at	A	A1MS	POPTR_0001s21780	POPTR_0001s21780 (11)	scaffold_1:20283404-20284628(+) (11)	NA	NA	NA	AT1G71240.2	Plant protein of unknown function (DUF639) 	LOC_Os01g64870.1	expressed protein	Medtr2g007450.1	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50909.1.A1_s_at	A	A1TS	POPTR_0005s01470	POPTR_0005s01470 (11)	scaffold_5:958233-958295(-) (11)	NA	NA	NA	AT1G09310.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5092.1.A1_at	A	A1TS	POPTR_0004s03030	POPTR_0004s03030 (11)	scaffold_4:2047149-2047501(-) (11)	NA	Q9SEV0	Anthocyanidin reductase	AT1G61720.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g53920.1	"leucoanthocyanidin reductase, putative"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.5092.2.S1_a_at	A	A1TS	POPTR_0004s03030	POPTR_0004s03030 (11)	scaffold_4:2047623-2047807(-) (11)	NA	Q9SEV0	Anthocyanidin reductase	AT1G61720.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g53920.1	"leucoanthocyanidin reductase, putative"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.5092.2.S1_at	A	A1TS	POPTR_0011s03430	POPTR_0011s03430 (10)	scaffold_11:3534852-3535170(+) (10)	NA	Q9SEV0	Anthocyanidin reductase	AT1G61720.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g53920.1	"leucoanthocyanidin reductase, putative"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.50938.1.A1_s_at	A	A1TS	POPTR_0010s08880	POPTR_0010s08880 (11)	scaffold_10:9662429-9662657(-) (11)	NA	Q38832	Auxin-responsive protein IAA14	AT4G14550.1	indole-3-acetic acid inducible 14 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.5094.1.A1_at	A	A1TS	POPTR_0008s13080	POPTR_0008s13080 (11)	scaffold_8:8528861-8529042(+) (11)	NA	NA	NA	AT1G70780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g21925.1	expressed protein	Medtr1g034970.1	"Senescence-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5094.1.A1_s_at	A	A1TS	POPTR_0008s13080	POPTR_0008s13080 (11)	scaffold_8:8528783-8529127(+) (11)	NA	NA	NA	AT1G70780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g21925.1	expressed protein	Medtr1g034970.1	"Senescence-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5094.2.S1_s_at	A	A1TS	POPTR_0010s12090	POPTR_0010s12090 (11)	scaffold_10:12179758-12180133(-) (11)	NA	NA	NA	AT1G70780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g21925.1	expressed protein	Medtr1g034970.1	"Senescence-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50946.3.S1_s_at	A	A1TS	POPTR_0013s06450	POPTR_0013s06450 (11)	scaffold_13:5037463-5037792(+) (11)	NA	Q9FJT8	Histone acetyltransferase type B catalytic subunit	AT5G56740.1	histone acetyltransferase of the GNAT family 2 	LOC_Os09g17850.1	"acetyltransferase type B catalytic subunit, putative, expressed"	Medtr5g088060.1	"Histone acetyltransferase type B catalytic subunit, putative "	GO:0016568|chromatin modification	GO:0004402|histone acetyltransferase activity	NA
PtpAffx.50946.4.S1_a_at	A	A1TS	POPTR_0013s06450	POPTR_0013s06450 (11)	scaffold_13:5034717-5035838(+) (11)	NA	Q9FJT8	Histone acetyltransferase type B catalytic subunit	AT5G56740.1	histone acetyltransferase of the GNAT family 2 	LOC_Os09g17850.1	"acetyltransferase type B catalytic subunit, putative, expressed"	Medtr5g088060.1	"Histone acetyltransferase type B catalytic subunit, putative "	GO:0016568|chromatin modification	GO:0004402|histone acetyltransferase activity	NA
PtpAffx.50946.5.S1_a_at	A	A1TS	POPTR_0013s06450	POPTR_0013s06450 (11)	scaffold_13:5034538-5034730(+) (11)	NA	Q9FJT8	Histone acetyltransferase type B catalytic subunit	AT5G56740.1	histone acetyltransferase of the GNAT family 2 	LOC_Os09g17850.1	"acetyltransferase type B catalytic subunit, putative, expressed"	Medtr5g088060.1	"Histone acetyltransferase type B catalytic subunit, putative "	GO:0016568|chromatin modification	GO:0004402|histone acetyltransferase activity	NA
PtpAffx.50946.5.S1_at	A	A1MS	POPTR_0013s06450	POPTR_0013s06450 (11)	scaffold_13:5034773-5034981(+) (11)	NA	Q9FJT8	Histone acetyltransferase type B catalytic subunit	AT5G56740.1	histone acetyltransferase of the GNAT family 2 	LOC_Os09g17850.1	"acetyltransferase type B catalytic subunit, putative, expressed"	Medtr5g088060.1	"Histone acetyltransferase type B catalytic subunit, putative "	GO:0016568|chromatin modification	GO:0004402|histone acetyltransferase activity	NA
PtpAffx.50952.1.A1_at	A	A1TS	POPTR_0001s23010	POPTR_0001s23010 (9)	scaffold_1:22050095-22050386(-) (9)	NA	NA	NA	AT4G15010.2	Mitochondrial substrate carrier family protein 	LOC_Os04g44540.2	"mitochondrial carrier protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50956.1.A1_at	A	A1TS	POPTR_0016s14930	POPTR_0016s14930 (11)	scaffold_16:14011638-14012258(+) (11)	NA	P48489	Serine/threonine-protein phosphatase PP1	AT2G39840.1	type one serine/threonine protein phosphatase 4 	LOC_Os08g35440.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g005010.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.50964.1.A1_at	A	A1TS	POPTR_0004s16510	POPTR_0004s16510 (10)	scaffold_4:16956669-16956938(-) (10)	NA	P45816	SEC14 cytosolic factor	AT2G21520.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g04020.1	expressed protein	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50969.1.S1_s_at	A	A1TS	POPTR_0012s02660	POPTR_0012s02660 (11)	scaffold_12:2184520-2185017(+) (11)	NA	Q9FJD2	Oligopeptide transporter 9	AT5G53510.1	oligopeptide transporter 9 	LOC_Os06g03700.1	"oligopeptide transporter, putative, expressed"	Medtr3g109340.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50969.2.S1_a_at	A	A1TS	POPTR_0012s02660	POPTR_0012s02660 (11)	scaffold_12:2185051-2185087(+) (11)	NA	Q9FJD2	Oligopeptide transporter 9	AT5G53510.1	oligopeptide transporter 9 	LOC_Os06g03700.1	"oligopeptide transporter, putative, expressed"	Medtr3g109340.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51006.1.A1_at	A	A1TS	POPTR_0013s03450	POPTR_0013s03450 (11)	scaffold_13:2139671-2141067(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51006.2.A1_a_at	A	A1TS	POPTR_0013s03450	POPTR_0013s03450 (11)	scaffold_13:2139121-2139207(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51006.2.A1_at	A	A1MS	POPTR_0013s03450	POPTR_0013s03450 (11)	scaffold_13:2138995-2139444(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51019.1.A1_s_at	A	A1TS	POPTR_0006s21530	POPTR_0006s21530 (11)	scaffold_6:20577606-20578594(-) (11)	NA	NA	NA	AT5G06440.3	BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). 	LOC_Os11g36070.3	expressed protein	AC233682_33.1	"Myosin head, motor region; WGR; Glycosyl hydrolases 38, C-terminal AC233682.2 126964-129412 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51029.1.A1_at	A	A1TS	POPTR_0002s20250	POPTR_0002s20250 (11)	scaffold_2:16205522-16206450(+) (11)	NA	O46072	Probable ATP-dependent RNA helicase kurz	AT1G33390.1	RNA helicase family protein 	LOC_Os02g50370.1	"helicase domain-containing protein, putative, expressed"	Medtr4g024790.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.5103.1.S1_a_at	A	A3TS	POPTR_0013s07800	POPTR_0013s07850 (11)//POPTR_0423s00200 (11)//POPTR_0013s07800 (11)	scaffold_13:6634693-6634854(-) (11)//scaffold_13:6753627-6753788(-) (11)//scaffold_423:922-1083(+) (11)	NA	Q07469	Bark storage protein A	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.5103.1.S1_s_at	A	A5TS	POPTR_0013s07800	POPTR_0013s07850 (11)//POPTR_0423s00200 (11)//POPTR_0013s07840 (11)//POPTR_0013s07810 (11)//POPTR_0013s07800 (11)	scaffold_13:6634894-6635094(-) (11)//scaffold_13:6660775-6660972(-) (11)//scaffold_13:6742845-6743036(-) (11)//scaffold_13:6753828-6754001(-) (11)//scaffold_423:682-884(+) (11)	NA	Q07469	Bark storage protein A	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.5103.2.A1_x_at	A	A3TS	POPTR_0013s07800	POPTR_0013s07850 (10)//POPTR_0423s00200 (10)//POPTR_0013s07800 (10)	scaffold_13:6634750-6634834(-) (10)//scaffold_13:6753684-6753768(-) (10)//scaffold_423:942-1026(+) (10)	NA	Q07469	Bark storage protein A	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.5103.2.S1_at	A	A3TA	POPTR_0013s07800	POPTR_0013s07850 (11)//POPTR_0423s00200 (11)//POPTR_0013s07800 (11)	scaffold_13:6634727-6634834(+) (11)//scaffold_13:6753661-6753768(+) (11)//scaffold_423:942-1049(-) (11)	POPTR_0013s07810 (7)//POPTR_0013s07840 (7)	Q07469	Bark storage protein A	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.51037.1.S1_s_at	A	A1TS	POPTR_0013s01910	POPTR_0013s01910 (10)	scaffold_13:1104273-1104306(-) (10)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51038.2.S1_s_at	A	A2TS	POPTR_0008s21080	POPTR_0010s00530 (10)//POPTR_0008s21080 (10)	scaffold_10:278523-278556(-) (10)//scaffold_8:15206817-15206850(+) (10)	NA	Q5EBF1	Cytosolic purine 5'-nucleotidase	AT5G48960.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os01g14810.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr8g133970.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51048.1.S1_at	A	A1TS	POPTR_0011s04900	POPTR_0011s04900 (11)	scaffold_11:4846957-4847626(-) (11)	NA	NA	NA	AT1G11060.1	WAPL (Wings apart-like protein regulation of heterochromatin) protein 	LOC_Os10g35380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51053.1.A1_at	A	A1TS	POPTR_0012s05750	POPTR_0012s05750 (9)	scaffold_12:5554911-5555383(-) (9)	NA	Q3U4B4	Lipase member N	AT1G73920.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g33784.1	"lipase family protein, putative, expressed"	Medtr4g158530.1	AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.51055.1.S1_at	A	A1TS	POPTR_0003s21580	POPTR_0003s21580 (10)	scaffold_3:19681529-19682602(-) (10)	NA	Q54WW7	Probable serine/threonine-protein kinase DDB_G0279405	AT3G45240.2	geminivirus rep interacting kinase 1 	LOC_Os03g50330.1	"CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g110530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5108.1.A1_s_at	A	A1TS	POPTR_0004s02630	POPTR_0004s02630 (11)	scaffold_4:1754426-1754808(-) (11)	NA	Q06827	Caltractin	AT5G54490.1	pinoid-binding protein 1 	LOC_Os06g46950.1	"EF hand family protein, putative, expressed"	Medtr2g011470.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5112.1.A1_at	A	A1TS	POPTR_0003s05000	POPTR_0003s05000 (11)	scaffold_3:6157108-6157405(+) (11)	NA	Q9CA86	Peroxisome assembly protein 2	AT1G79810.1	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g19480.1	"peroxisome assembly protein, putative, expressed"	Medtr8g015150.1	"Zinc finger, RING-type; Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
PtpAffx.5115.1.A1_at	A	A1TS	POPTR_0001s33160	POPTR_0001s33160 (10)	scaffold_1:31368960-31369378(+) (10)	NA	Q9LW26	"Acyltransferase-like protein At3g26840, chloroplastic"	AT5G41120.1	Esterase/lipase/thioesterase family protein 	LOC_Os09g33530.1	expressed protein	Medtr7g094360.1	"catalytic, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5117.1.A1_at	A	A1TS	POPTR_0006s12760	POPTR_0006s12760 (11)	scaffold_6:9926040-9926951(-) (11)	NA	P26683	RNA polymerase sigma factor rpoD	AT2G36990.1	RNApolymerase sigma-subunit F 	LOC_Os08g14450.1	"RNA polymerase sigma factor, putative, expressed"	Medtr1g076430.1	Sigma-70 factor; ; 	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.5118.1.A1_a_at	A	A1TS	POPTR_0018s10990	POPTR_0018s10990 (11)	scaffold_18:11806005-11806370(-) (11)	NA	Q8WV93	Lactation elevated protein 1	AT4G28070.2	AFG1-like ATPase family protein 	LOC_Os08g16480.2	"ATPase, AFG1 family domain containing protein, expressed"	Medtr1g013700.1	AFG1-like ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.5118.3.A1_a_at	A	A1TS	POPTR_0018s10990	POPTR_0018s10990 (11)	scaffold_18:11807405-11808496(-) (11)	NA	Q8WV93	Lactation elevated protein 1	AT4G28070.2	AFG1-like ATPase family protein 	LOC_Os08g16480.2	"ATPase, AFG1 family domain containing protein, expressed"	Medtr1g013700.1	AFG1-like ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.51184.2.S1_s_at	A	A1TS	POPTR_0006s02950	POPTR_0006s02950 (11)	scaffold_6:1863618-1863923(+) (11)//scaffold_97:14381-14686(-) (11)	POPTR_0097s00230 (6)	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.512.1.A1_at	A	A1TS	POPTR_0001s35150	POPTR_0001s35150 (10)	scaffold_1:33401936-33402394(-) (10)	NA	Q9LYJ9	DEAD-box ATP-dependent RNA helicase 46	AT5G14610.2	DEAD box RNA helicase family protein 	LOC_Os01g07740.3	"DEAD-box ATP-dependent RNA helicase 14, putative, expressed"	Medtr6g005450.1	"WW/Rsp5/WWP; Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.51205.1.A1_at	A	A1TS	POPTR_0001s13570	POPTR_0001s13570 (9)	scaffold_1:10639827-10640691(+) (9)	NA	NA	NA	AT5G14090.1	unknown protein; Has 56 Blast hits to 56 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os11g29840.1	expressed protein	Medtr7g022300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51219.1.S1_at	A	A1TS	POPTR_0008s11270	POPTR_0008s11270 (11)	scaffold_8:7133770-7134310(-) (11)	NA	Q1XDU5	Uncharacterized N-acetyltransferase ycf52	AT1G26220.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os08g01170.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr1g023090.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.5122.1.A1_s_at	A	A1TS	POPTR_0019s05540	POPTR_0019s05540 (11)	scaffold_19:5913236-5913336(-) (11)	NA	P42745	Ubiquitin-conjugating enzyme E2 2	AT2G02760.1	ubiquiting-conjugating enzyme 2 	LOC_Os07g07240.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g112640.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.5122.2.S1_x_at	A	A1TS	POPTR_0013s06060	POPTR_0013s06060 (11)	scaffold_13:4479928-4480300(-) (11)	NA	P42745	Ubiquitin-conjugating enzyme E2 2	AT2G02760.1	ubiquiting-conjugating enzyme 2 	LOC_Os07g07240.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g112640.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.5122.3.A1_at	A	A1MS	POPTR_0019s05540	POPTR_0019s05540 (11)	scaffold_19:5915808-5915854(-) (11)	POPTR_0013s06060 (8)	P42745	Ubiquitin-conjugating enzyme E2 2	AT2G02760.1	ubiquiting-conjugating enzyme 2 	LOC_Os07g07240.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g112640.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.5122.4.S1_s_at	A	A1TS	POPTR_0013s06060	POPTR_0013s06060 (11)	scaffold_13:4480306-4482410(-) (11)	NA	P42745	Ubiquitin-conjugating enzyme E2 2	AT2G02760.1	ubiquiting-conjugating enzyme 2 	LOC_Os07g07240.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g112640.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.51273.1.A1_at	A	A1TS	POPTR_0006s09400	POPTR_0006s09400 (11)	scaffold_6:6910310-6910640(-) (11)	NA	Q52EB3	Serine/threonine-protein kinase ATG1	AT2G37840.1	Protein kinase superfamily protein 	LOC_Os03g16130.1	"CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g144060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.51286.1.S1_at	A	A1TS	POPTR_0016s07990	POPTR_0016s07990 (11)	scaffold_1586:639-898(+) (11)//scaffold_16:5778322-5778581(-) (11)//scaffold_16:5802297-5802556(-) (11)	POPTR_0016s07980 (7)	P19873	Inhibitor of trypsin and hageman factor	AT2G38870.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr5g097390.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.51307.1.S1_s_at	A	A2TS	POPTR_0002s22980	POPTR_0002s22980 (11)//POPTR_0010s01370 (11)	scaffold_10:1483325-1483666(+) (11)//scaffold_2:20246404-20246747(+) (11)	NA	Q8K370	Acyl-CoA dehydrogenase family member 10	AT3G06810.1	acyl-CoA dehydrogenase-related 	LOC_Os07g47820.1	"acyl-CoA dehydrogenase family member 10, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.5132.1.S1_a_at	A	A1TS	POPTR_0001s13480	POPTR_0001s13480 (11)	scaffold_1:10557887-10558226(+) (11)	NA	Q9ASS6	"Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic"	AT5G13120.1	cyclophilin 20-2 	LOC_Os05g01270.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr7g134340.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.51321.1.A1_s_at	A	A1TS	POPTR_0013s03020	POPTR_0013s03020 (11)	scaffold_13:1839210-1839450(-) (11)	NA	P37707	B2 protein	AT2G32910.1	DCD (Development and Cell Death) domain protein 	LOC_Os02g51140.1	"N-rich protein, putative, expressed"	Medtr3g151330.1	Kelch related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51327.1.S1_a_at	A	A1TS	POPTR_0002s00580	POPTR_0002s00580 (11)	scaffold_2:251327-251926(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G33590.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g41810.1	"reductase, putative, expressed"	CU179634_4.1	NAD-dependent epimerase/dehydratase CU179634.6 12713-9139 H EGN_Mt090430 200	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.51327.3.S1_at	A	A1TS	POPTR_0002s00580	POPTR_0002s00580 (11)	scaffold_2:251514-251685(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G33590.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g41810.1	"reductase, putative, expressed"	CU179634_4.1	NAD-dependent epimerase/dehydratase CU179634.6 12713-9139 H EGN_Mt090430 200	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.5133.1.A1_at	A	A2TS	POPTR_0002s22930	POPTR_0008s23300 (11)//POPTR_0002s22930 (11)	scaffold_2:20132921-20133042(-) (11)//scaffold_552:11571-11692(+) (11)//scaffold_59:27126-27247(-) (11)//scaffold_59:68402-68523(+) (11)//scaffold_8:18710475-18710596(-) (11)//scaffold_8:18766218-18766339(+) (11)//scaffold_8:18800174-18800295(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5133.2.S1_s_at	A	A4TS	POPTR_0008s23300	POPTR_0008s23300 (11)//POPTR_0059s00210 (11)//POPTR_0008s23320 (11)//POPTR_0002s22930 (10)	scaffold_2:20133152-20133420(-) (10)//scaffold_552:497-723(+) (11)//scaffold_59:27357-27667(-) (11)//scaffold_59:68063-68292(+) (11)//scaffold_8:18765840-18766108(+) (11)//scaffold_8:18800405-18800631(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51350.1.A1_at	A	A1TS	POPTR_0011s13730	POPTR_0011s13730 (10)	scaffold_11:16404932-16405482(-) (10)	NA	NA	NA	AT3G20600.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	NA	NA	Medtr2g097010.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.51363.1.S1_at	A	A1TS	POPTR_0004s15470	POPTR_0004s15470 (11)	scaffold_4:16096960-16097511(+) (11)	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26940.1	"cytochrome P450, putative, expressed"	Medtr6g009040.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.51365.1.S1_at	A	A1MS	POPTR_0004s23890	POPTR_0004s23890 (9)	scaffold_4:22517384-22518038(-) (9)	NA	Q9SWR3	Methionine S-methyltransferase	AT5G49810.1	methionine S-methyltransferase 	LOC_Os05g01470.2	"methionine S-methyltransferase, putative, expressed"	Medtr2g005050.1	Methyltransferase small; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51367.1.S1_s_at	A	A1TS	POPTR_0002s20310	POPTR_0002s20310 (11)	scaffold_2:16294399-16294805(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51435.3.A1_a_at	A	A1TS	POPTR_0001s30380	POPTR_0001s30380 (11)	scaffold_1:28866560-28868235(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51444.1.A1_s_at	A	A1TS	POPTR_0012s07060	POPTR_0012s07060 (9)	scaffold_12:7742213-7742291(+) (9)	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g51080.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51460.1.S1_a_at	A	A1TS	POPTR_0008s06670	POPTR_0008s06670 (11)	scaffold_8:3994795-3995271(+) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	AC233659_11.2	Clathrin light chain AC233659.1 45746-42471 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51477.1.S1_s_at	A	A1TS	POPTR_0003s15620	POPTR_0003s15620 (11)	scaffold_3:15365191-15365708(+) (11)	NA	NA	NA	AT4G20300.2	Protein of unknown function (DUF1639) 	LOC_Os01g48830.2	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51478.1.S1_at	A	A1TS	POPTR_0015s05240	POPTR_0015s05240 (11)	scaffold_15:5602317-5602408(-) (11)	NA	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0004371|glycerone kinase activity	NA
PtpAffx.51478.1.S1_s_at	A	A1TS	POPTR_0015s05240	POPTR_0015s05240 (9)	scaffold_15:5602107-5603615(-) (9)	NA	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0004371|glycerone kinase activity	NA
PtpAffx.51486.1.A1_at	A	A1TS	POPTR_0001s07840	POPTR_0001s07840 (11)	scaffold_1:5935121-5935550(+) (11)	NA	NA	NA	AT4G12340.1	copper ion binding 	LOC_Os05g01300.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5149.2.S1_a_at	A	A1TS	POPTR_0001s19050	POPTR_0001s19050 (11)	scaffold_1:16359115-16359453(+) (11)	NA	P51615	NADP-dependent malic enzyme	AT1G79750.1	NADP-malic enzyme 4 	LOC_Os01g52500.2	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.51515.1.S1_at	A	A1TA	POPTR_0019s04610	POPTR_0019s04610 (11)	scaffold_19:4801919-4802359(-) (11)	NA	Q9SM43	"Violaxanthin de-epoxidase, chloroplastic"	AT1G08550.2	non-photochemical quenching 1 	LOC_Os04g31040.3	"violaxanthin de-epoxidase, putative, expressed"	Medtr7g143290.1	Lipocalin-related protein and Bos/Can/Equ allergen; Calycin 	GO:0055114|oxidation reduction	GO:0046422|violaxanthin de-epoxidase activity	GO:0009507|chloroplast
PtpAffx.5152.1.S1_at	A	A1TS	POPTR_0007s10260	POPTR_0007s10260 (10)	scaffold_7:10097230-10097769(-) (10)	NA	NA	NA	AT4G37445.1	BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g03430.1	expressed protein	Medtr4g165560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51524.1.S1_at	A	A1TS	POPTR_0003s22050	POPTR_0003s22050 (11)	scaffold_3:19986708-19987490(+) (11)	NA	Q04869	Uncharacterized protein YMR315W	AT3G20790.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g10820.1	"oxidoreductase domain protein, putative, expressed"	Medtr2g118050.1	Bacterial glucose-fructose oxidoreductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.51524.2.S1_at	A	A1TS	POPTR_0003s22050	POPTR_0003s22050 (11)	scaffold_3:19982829-19985176(+) (11)	NA	Q04869	Uncharacterized protein YMR315W	AT3G20790.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g10820.1	"oxidoreductase domain protein, putative, expressed"	Medtr2g118050.1	Bacterial glucose-fructose oxidoreductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.5154.1.A1_s_at	A	A5TS	POPTR_0019s11810	POPTR_0019s11850 (11)//POPTR_0019s11810 (11)//POPTR_0019s11820 (11)//POPTR_0019s11830 (11)//POPTR_0019s11860 (11)	scaffold_19:13048351-13048754(+) (11)//scaffold_19:13062410-13062887(+) (11)//scaffold_19:13067941-13068349(+) (11)//scaffold_19:13079106-13079512(+) (11)//scaffold_19:13089601-13090002(+) (11)	NA	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.51540.1.S1_at	A	A1TS	POPTR_0008s08740	POPTR_0008s08740 (11)	scaffold_8:5397613-5399002(+) (11)	NA	Q93ZL5	Dof zinc finger protein DOF5.2	AT5G39660.2	cycling DOF factor 2 	LOC_Os01g15900.1	expressed protein	Medtr4g111860.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.5156.1.A1_at	A	A1TS	POPTR_0014s12960	POPTR_0014s12960 (11)	scaffold_14:9547983-9548434(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5159.1.A1_at	A	A1TS	POPTR_0001s32140	POPTR_0001s32140 (11)	scaffold_1:30548657-30549020(+) (11)	NA	P49098	Cytochrome b5	AT2G32720.1	cytochrome B5 isoform B 	LOC_Os05g01820.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr4g023560.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.51608.1.A1_at	A	A1TS	POPTR_0006s21200	POPTR_0006s21200 (11)	scaffold_6:20283810-20287481(-) (11)	NA	Q9UWY6	Digeranylgeranylglyceryl phosphate synthase	AT3G11945.1	homogentisate prenyltransferase 	LOC_Os07g38850.1	"prenyltransferase, putative"	Medtr8g129290.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.51612.1.A1_at	A	A1TS	POPTR_0022s00470	POPTR_0022s00470 (11)	scaffold_22:178033-178916(+) (11)	NA	Q2VEX9	"Carotenoid isomerase, chloroplastic"	AT1G57770.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g62510.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	NA	NA	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.51614.1.S1_at	A	A1TS	POPTR_0017s12390	POPTR_0017s12390 (11)	scaffold_17:12572893-12573878(+) (11)	NA	NA	NA	AT3G29180.2	Protein of unknown function (DUF1336) 	LOC_Os12g38850.3	"DUF1336 domain containing protein, expressed"	Medtr7g011080.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51614.2.S1_at	A	A1TS	POPTR_0017s12390	POPTR_0017s12390 (10)	scaffold_17:12570040-12570878(+) (10)	NA	NA	NA	AT3G29180.2	Protein of unknown function (DUF1336) 	LOC_Os12g38850.3	"DUF1336 domain containing protein, expressed"	Medtr7g011080.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51614.3.S1_a_at	A	A1TS	POPTR_0017s12390	POPTR_0017s12390 (11)	scaffold_17:12567298-12567452(+) (11)	NA	NA	NA	AT3G29180.2	Protein of unknown function (DUF1336) 	LOC_Os12g38850.3	"DUF1336 domain containing protein, expressed"	Medtr7g011080.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51617.1.A1_s_at	A	A1TS	POPTR_0001s19170	POPTR_0001s19170 (11)	scaffold_1:16601976-16602351(-) (11)	NA	Q941H7	Profilin	AT2G19770.1	profilin 5 	LOC_Os10g17680.1	"profilin domain containing protein, expressed"	Medtr4g160100.1	Plant profilin 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	GO:0015629|actin cytoskeleton
PtpAffx.5163.1.A1_at	A	A1TS	POPTR_0005s17140	POPTR_0005s17140 (11)	scaffold_5:14275609-14275816(+) (11)	NA	P43355	Melanoma-associated antigen 1	AT1G34770.1	CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). 	LOC_Os07g05650.1	"MAGE-8 antigen-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51641.1.S1_s_at	A	A1TS	POPTR_0001s32950	POPTR_0001s32950 (11)	scaffold_1:31218609-31218766(+) (11)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os02g52860.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr7g096810.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51641.2.S1_at	A	A1TS	POPTR_0017s08780	POPTR_0017s08780 (11)	scaffold_17:7372961-7373051(+) (11)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os02g52860.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr7g096810.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51642.1.A1_at	A	A1TS	POPTR_0008s20920	POPTR_0008s20920 (9)	scaffold_8:14946326-14946920(+) (9)	NA	NA	NA	AT2G39080.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g26920.1	expressed protein	AC235671_2.1	hypothetical protein AC235671.2 8977-11666 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51652.1.A1_at	A	A1TS	POPTR_0010s11700	POPTR_0010s11700 (11)	scaffold_10:11886806-11888630(+) (11)	NA	Q68F38	Protein VAC14 homolog	AT2G01690.1	ARM repeat superfamily protein 	LOC_Os03g12300.1	"HEAT repeat family protein, putative, expressed"	Medtr4g157120.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51659.1.A1_at	A	A1TS	POPTR_0004s05030	POPTR_0004s05030 (10)	scaffold_4:3787900-3788283(+) (10)	NA	NA	NA	AT1G28520.2	vascular plant one zinc finger protein 	LOC_Os01g54930.1	"one zinc finger protein, putative, expressed"	Medtr4g109030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51672.1.A1_at	A	A1TS	POPTR_0001s03110	POPTR_0001s03110 (11)	scaffold_1:2455553-2456153(+) (11)	NA	Q9FJR0	Regulator of nonsense transcripts 1 homolog	AT5G47010.1	"RNA helicase, putative "	LOC_Os07g31340.1	"regulator of nonsense transcripts 1, putative, expressed"	Medtr5g014030.1	"Type III restriction enzyme, res subunit "	"GO:0000184|""nuclear-transcribed mRNA catabolic process, nonsense-mediated decay""||GO:0044265|cellular macromolecule catabolic process"	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0008270|zinc ion binding	GO:0005737|cytoplasm
PtpAffx.51676.1.S1_s_at	A	A1TS	POPTR_0004s21360	POPTR_0004s21360 (10)	scaffold_4:20520837-20520922(+) (10)	NA	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT1G08320.3	bZIP transcription factor family protein 	LOC_Os01g64020.1	"transcription factor, putative, expressed"	Medtr4g070060.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.51705.1.S1_s_at	A	A1TS	POPTR_0001s28850	POPTR_0001s28850 (11)	scaffold_1:27630350-27631076(+) (11)	NA	Q9LU68	Protein CHLOROPLAST IMPORT APPARATUS 2	AT1G07050.1	CCT motif family protein 	LOC_Os02g05470.1	"CCT motif family protein, expressed"	Medtr5g080950.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51715.1.S1_at	A	A1TS	POPTR_0011s00770	POPTR_0011s00770 (11)	scaffold_11:381515-381930(+) (11)	NA	NA	NA	AT1G12020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os11g29810.1	conserved hypothetical protein	Medtr2g029450.1	"protein F12F1.11 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5172.1.A1_at	A	A1TS	POPTR_0014s08190	POPTR_0014s08190 (11)	scaffold_14:6084171-6084669(+) (11)	NA	NA	NA	AT2G45990.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 312 Blast hits to 312 proteins in 90 species: Archae - 0; Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). 	LOC_Os07g23520.2	expressed protein	Medtr7g087550.1	"Haloacid dehalogenase-like hydrolase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5173.1.A1_at	A	A1TS	POPTR_0003s01400	POPTR_0003s01400 (10)	scaffold_3:1223248-1223666(+) (10)	NA	Q86JM5	Putative elongation of fatty acids protein DDB_G0272012	AT3G06470.1	GNS1/SUR4 membrane protein family 	LOC_Os03g49480.1	"elongation of fatty acids protein 2, putative, expressed"	Medtr7g139530.1	GNS1/SUR4 membrane protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.51731.1.S1_at	A	A1TS	POPTR_0002s01730	POPTR_0002s01730 (10)	scaffold_2:923013-923591(+) (10)	NA	NA	NA	AT5G27280.1	Zim17-type zinc finger protein 	LOC_Os06g50870.1	"DNL zinc finger domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51740.2.A1_a_at	A	A1TS	POPTR_0017s02980	POPTR_0017s02980 (11)	scaffold_17:2141413-2145687(-) (11)	NA	Q8W1X2	Pyridoxal kinase	AT5G37850.2	pfkB-like carbohydrate kinase family protein 	LOC_Os12g40830.3	"kinase, pfkB family, putative, expressed"	Medtr5g087190.1	Pyridoxal kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51742.1.S1_at	A	A1TS	POPTR_0017s12800	POPTR_0017s12800 (11)	scaffold_17:12987176-12988020(+) (11)	NA	Q42290	Probable mitochondrial-processing peptidase subunit beta	AT3G02090.1	Insulinase (Peptidase family M16) protein 	LOC_Os03g11410.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.51765.1.A1_a_at	A	A1TS	POPTR_0019s05080	POPTR_0019s05080 (11)	scaffold_19:5320957-5321587(+) (11)	NA	NA	NA	AT3G03890.1	FMN binding 	LOC_Os07g38620.1	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.51765.1.A1_at	A	A1MS	POPTR_0019s05080	POPTR_0019s05080 (10)	scaffold_19:5320483-5320612(+) (10)	NA	NA	NA	AT3G03890.1	FMN binding 	LOC_Os07g38620.1	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.51765.2.A1_at	A	A1TS	POPTR_0019s05080	POPTR_0019s05080 (11)	scaffold_19:5322431-5323305(+) (11)	NA	NA	NA	AT3G03890.1	FMN binding 	LOC_Os07g38620.1	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.51766.1.S1_at	A	A1TS	POPTR_0001s41430	POPTR_0001s41430 (9)	scaffold_1:41043205-41043662(+) (9)	NA	Q40392	TMV resistance protein N	AT1G52900.1	Toll-Interleukin-Resistance (TIR) domain family protein 	LOC_Os07g37950.1	expressed protein	Medtr2g014620.1	TIR 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.5177.1.S1_at	A	A1TS	POPTR_0010s01410	POPTR_0010s01410 (9)	scaffold_10:1517150-1517644(+) (9)	POPTR_0199s00200 (8)	NA	NA	AT3G06840.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49170.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51779.1.A1_at	A	A1TS	POPTR_0011s10390	POPTR_0011s10390 (10)	scaffold_11:12837260-12838010(+) (11)	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g47530.2	"CGMC_MAPKCMGC_2.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5179.2.A1_a_at	A	A2TS	POPTR_0004s05670	POPTR_0004s05670 (11)//POPTR_0011s07260 (11)	scaffold_11:8029057-8029311(+) (11)//scaffold_4:4432426-4432696(-) (11)	NA	Q96SZ5	2-aminoethanethiol dioxygenase	AT3G58670.3	Protein of unknown function (DUF1637) 	LOC_Os04g06790.2	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g009090.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.5179.2.A1_at	A	A1TS	POPTR_0004s05670	POPTR_0004s05670 (11)	scaffold_4:4432412-4432773(-) (11)	NA	Q96SZ5	2-aminoethanethiol dioxygenase	AT3G58670.3	Protein of unknown function (DUF1637) 	LOC_Os04g06790.2	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g009090.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.5179.3.S1_a_at	A	A1TS	POPTR_0011s07260	POPTR_0011s07260 (11)	scaffold_11:8029081-8029671(+) (11)	NA	Q6PDY2	2-aminoethanethiol dioxygenase	AT2G42670.1	Protein of unknown function (DUF1637) 	LOC_Os04g06790.2	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g009090.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.5179.4.S1_a_at	A	A1TS	POPTR_0011s07260	POPTR_0011s07260 (10)	scaffold_11:8029474-8029598(+) (10)	NA	Q6PDY2	2-aminoethanethiol dioxygenase	AT2G42670.1	Protein of unknown function (DUF1637) 	LOC_Os04g06790.2	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g009090.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.5181.1.A1_at	A	A1TA	POPTR_0011s02860	POPTR_0011s02860 (11)	scaffold_11:2819590-2819794(-) (11)	NA	P42784	Carboxyl-terminal-processing protease	AT5G46390.2	Peptidase S41 family protein 	LOC_Os01g47450.1	"OsCttP1 - Putative C-terminal processing peptidase homologue, expressed"	Medtr4g136660.1	"Peptidase S41A, C-terminal protease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0005515|protein binding||GO:0008236|serine-type peptidase activity	NA
PtpAffx.51818.1.S1_s_at	A	A1TS	POPTR_0010s03210	POPTR_0010s03210 (11)	scaffold_10:3962929-3964018(-) (11)	NA	Q10LG8	Tubby-like F-box protein 6	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5182.2.A1_a_at	A	A1TS	POPTR_0005s08700	POPTR_0005s08700 (11)	scaffold_5:6056735-6057082(+) (11)	NA	NA	NA	AT5G64820.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr4g140970.1	"80C09_13, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5184.1.A1_at	A	A1TS	POPTR_0003s17280	POPTR_0003s17280 (11)	scaffold_3:16686849-16688643(+) (11)	NA	Q5R533	Serine incorporator 3	AT2G33205.1	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os04g42720.1	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.5186.1.A1_at	A	A1TS	POPTR_0007s13740	POPTR_0007s13740 (11)	scaffold_7:13792564-13793151(-) (11)	NA	NA	NA	AT3G51100.1	unknown protein; Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g49980.1	expressed protein	Medtr4g033520.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5187.1.A1_at	A	A1TS	POPTR_0001s24320	POPTR_0001s24320 (11)	scaffold_1:23639364-23639403(+) (11)//scaffold_474:14984-15023(-) (11)	NA	Q9FVI1	Actin-depolymerizing factor 2	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.5187.1.A1_s_at	A	A1TS	POPTR_0001s24320	POPTR_0001s24320 (11)	scaffold_1:23638845-23639243(+) (11)	NA	Q9FVI1	Actin-depolymerizing factor 2	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.5187.3.A1_at	A	A2MS	POPTR_0001s24330	POPTR_0001s24330 (11)//POPTR_0474s00200 (10)	scaffold_1:23643557-23643931(+) (11)//scaffold_474:2642-3016(-) (10)	NA	Q9FVI1	Actin-depolymerizing factor 2	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.51877.1.S1_at	A	A1TS	POPTR_0008s06400	POPTR_0008s06400 (11)	scaffold_8:3797345-3798980(-) (11)	NA	P29675	Pollen-specific protein SF3	AT3G55770.5	GATA type zinc finger transcription factor family protein 	LOC_Os03g15940.1	"OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.5188.1.S1_a_at	A	A2TS	POPTR_0004s18030	POPTR_0004s18030 (11)//POPTR_0009s13650 (11)	scaffold_4:18040285-18040519(-) (11)//scaffold_9:10830517-10830749(-) (11)	NA	Q42564	"L-ascorbate peroxidase 3, peroxisomal"	AT4G35000.1	ascorbate peroxidase 3 	LOC_Os08g43560.1	"OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9, expressed"	Medtr4g098670.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.5188.1.S1_at	A	A1TS	POPTR_0004s18030	POPTR_0004s18030 (10)	scaffold_4:18039410-18040338(-) (10)	NA	Q42564	"L-ascorbate peroxidase 3, peroxisomal"	AT4G35000.1	ascorbate peroxidase 3 	LOC_Os08g43560.1	"OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9, expressed"	Medtr4g098670.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.5188.2.S1_a_at	A	A1TS	POPTR_0009s13650	POPTR_0009s13650 (11)	scaffold_9:10829811-10830018(-) (11)	NA	Q42564	"L-ascorbate peroxidase 3, peroxisomal"	AT4G35000.1	ascorbate peroxidase 3 	LOC_Os08g43560.1	"OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9, expressed"	Medtr4g098670.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.5189.1.A1_s_at	A	A1TS	POPTR_0012s04810	POPTR_0012s04810 (11)	scaffold_12:4191661-4192103(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G52450.1	MATE efflux family protein 	LOC_Os06g29844.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.51911.1.S1_at	A	A1TS	POPTR_0013s02220	POPTR_0013s02220 (10)	scaffold_13:1326667-1328489(+) (10)	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.2	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.51915.1.S1_at	A	A1TS	POPTR_0017s13420	POPTR_0017s13420 (11)	scaffold_17:13592579-13593217(-) (11)	NA	Q15034	Probable E3 ubiquitin-protein ligase HERC3	AT3G02300.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os03g40260.1	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr7g014870.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51918.2.A1_a_at	A	A2TS	POPTR_0004s05650	POPTR_0004s05650 (11)//POPTR_0011s07290 (11)	scaffold_11:8050813-8051444(-) (11)//scaffold_4:4420259-4420886(+) (11)	NA	NA	NA	AT1G29240.1	Protein of unknown function (DUF688) 	LOC_Os01g55410.1	expressed protein	Medtr4g109840.1	Protein of unknown function DUF688 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51918.2.A1_at	A	A1TS	POPTR_0004s05650	POPTR_0004s05650 (11)	scaffold_4:4420297-4420905(+) (11)	NA	NA	NA	AT1G29240.1	Protein of unknown function (DUF688) 	LOC_Os01g55410.1	expressed protein	Medtr4g109840.1	Protein of unknown function DUF688 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51919.1.S1_at	A	A1TS	POPTR_0006s13050	POPTR_0006s13050 (11)	scaffold_6:10267994-10268757(-) (11)	NA	Q4R6F8	T-complex protein 1 subunit beta	AT5G20890.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g42220.1	"T-complex protein, putative, expressed"	Medtr3g024690.1	"Protein kinase; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.51920.1.S1_at	A	A1TS	POPTR_0001s34550	POPTR_0001s34550 (10)	scaffold_1:32739279-32740365(+) (10)	NA	O49725	Probable purine permease 10	AT4G18210.1	purine permease 10 	LOC_Os02g46380.1	"purine permease, putative, expressed"	Medtr2g018910.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.51939.1.S1_at	A	A1TS	POPTR_0020s00440	POPTR_0020s00440 (10)	scaffold_20:659187-659578(+) (10)	NA	Q9LYC8	Monothiol glutaredoxin-S6	AT3G62930.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g129950.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.5195.1.S1_a_at	A	A1TS	POPTR_0004s04970	POPTR_0004s04970 (11)	scaffold_4:3725722-3726605(-) (11)	NA	O23661	Auxin response factor 3	AT2G33860.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os01g48060.3	"auxin response factor, putative, expressed"	Medtr2g018270.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.51952.1.S1_at	A	A1TS	POPTR_0018s12340	POPTR_0018s12340 (9)	scaffold_18:12826645-12827072(-) (9)	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G25270.1	Ubiquitin-like superfamily protein 	LOC_Os08g19830.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51972.1.S1_s_at	A	A1TS	POPTR_0018s01050	POPTR_0018s01050 (11)	scaffold_18:982556-982899(+) (11)	NA	NA	NA	AT2G25660.1	embryo defective 2410 	LOC_Os01g08420.1	"EMB2410, putative, expressed"	Medtr3g136060.1	"EMB2410, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51977.1.S1_at	A	A1MS	POPTR_0006s17700	POPTR_0006s17700 (11)	scaffold_6:15845038-15845266(+) (11)	NA	NA	NA	AT1G77180.2	chromatin protein family 	LOC_Os02g52250.1	"SKIP/SNW domain containing protein, expressed"	Medtr2g129890.1	SKIP/SNW 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51981.1.S1_at	A	A1TS	POPTR_0010s08950	POPTR_0010s08950 (11)	scaffold_10:9738180-9738445(-) (11)	NA	Q9SUL7	CBL-interacting serine/threonine-protein kinase 4	AT4G14580.1	CBL-interacting protein kinase 4 	LOC_Os03g43440.1	"CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	AC233668_30.1	"NAF; Serine/threonine protein kinase, active site AC233668.2 124906-121950 E EGN_Mt090430 200"	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.52024.1.S1_s_at	A	A1TS	POPTR_0006s26200	POPTR_0006s26200 (10)	scaffold_6:24471194-24472366(-) (11)	NA	NA	NA	AT1G60560.1	SWIM zinc finger family protein 	LOC_Os07g12520.1	"zinc ion binding protein, putative, expressed"	Medtr8g047590.1	"Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.5203.1.A1_at	A	A1TS	POPTR_0002s09550	POPTR_0002s09550 (11)	scaffold_2:6846547-6846975(+) (11)	NA	NA	NA	AT1G35830.1	VQ motif-containing protein 	LOC_Os09g20460.1	"VQ domain containing protein, putative, expressed"	Medtr5g072210.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52037.1.S1_at	A	A1TS	POPTR_0010s12510	POPTR_0010s12510 (10)	scaffold_10:12523610-12523944(-) (10)	NA	Q5QQ56	Xylosyltransferase 1	AT1G71070.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g03160.2	"xylosyltransferase, putative, expressed"	Medtr1g137280.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.52044.1.S1_at	A	A1TS	POPTR_0001s35080	POPTR_0001s35080 (11)	scaffold_1:33359660-33362630(+) (11)	NA	Q40345	"Isocitrate dehydrogenase [NADP], chloroplastic (Fragment)"	AT5G14590.1	Isocitrate/isopropylmalate dehydrogenase family protein 	LOC_Os04g42920.1	"dehydrogenase, putative, expressed"	Medtr6g005410.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.52055.1.S1_at	A	A1TS	POPTR_0005s25610	POPTR_0005s25610 (10)	scaffold_5:23847191-23848147(+) (10)	NA	Q6NSQ7	Protein LTV1 homolog	AT3G49990.1	unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). 	LOC_Os03g25620.1	"LTV1, putative, expressed"	Medtr4g024070.1	Low temperature viability protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52061.1.S1_at	A	A1TS	POPTR_0017s13910	POPTR_0017s13910 (10)	scaffold_17:14084416-14087509(-) (10)	NA	NA	NA	AT5G16030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52068.1.S1_at	A	A1TS	POPTR_0001s23710	POPTR_0001s23710 (10)	scaffold_1:23099172-23099519(-) (10)	NA	Q9AUE0	Callose synthase 1	AT1G05570.1	callose synthase 1 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.52072.1.S1_at	A	A1TS	POPTR_0002s23460	POPTR_0002s23460 (9)	scaffold_2:20974729-20975207(+) (9)	NA	Q9C5Z2	Eukaryotic translation initiation factor 3 subunit H	AT1G10840.1	translation initiation factor 3 subunit H1 	LOC_Os04g30780.1	"eukaryotic translation initiation factor 3 subunit H, putative, expressed"	Medtr7g021910.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52080.1.S1_s_at	A	A1TS	POPTR_0001s13730	POPTR_0001s13730 (11)	scaffold_1:10797236-10798894(-) (11)	NA	Q9C7F5	Nuclear transport factor 2	AT1G27970.1	nuclear transport factor 2B 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
PtpAffx.52099.1.A1_at	A	A2TS	POPTR_0010s17010	POPTR_1645s00200 (10)//POPTR_0010s17010 (10)	scaffold_10:15770261-15771238(+) (10)//scaffold_1645:1747-2727(+) (10)	NA	Q54DM1	Mitotic checkpoint protein bub3	AT1G69400.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g39950.1	"mitotic checkpoint protein, putative, expressed"	Medtr5g045940.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52104.1.A1_s_at	A	A1TS	POPTR_0011s16450	POPTR_0011s16450 (11)	scaffold_11:18359529-18359987(-) (11)	NA	NA	NA	AT2G34780.2	maternal effect embryo arrest 22 	LOC_Os01g56290.1	expressed protein	AC147501_20.1	hypothetical protein AC147501.9 80184-71093 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.52106.1.S1_at	A	A1TS	POPTR_0015s13820	POPTR_0015s13820 (9)	scaffold_15:13593048-13593485(+) (9)	NA	NA	NA	AT1G06010.1	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g039520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52116.1.S1_at	A	A1TS	POPTR_0017s14540	POPTR_0017s14540 (9)	scaffold_17:14559501-14559735(+) (9)	NA	Q54Y67	Probable biogenesis of lysosome-related organelles complex 1 subunit 2	AT5G49550.1	"CONTAINS InterPro DOMAIN/s: Biogenesis of lysosome-related organelles complex-1, subunit 2 (InterPro:IPR019269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g09780.1	"phytoene dehydrogenase-like, putative, expressed"	Medtr3g040970.1	"phytoene dehydrogenase-like, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52137.1.A1_at	A	A1TS	POPTR_0012s06430	POPTR_0012s06430 (11)	scaffold_12:6833839-6834219(-) (11)	NA	Q9SZF7	Protein SHORT-ROOT	AT4G37650.1	GRAS family transcription factor 	LOC_Os07g39820.1	"SHR, putative, expressed"	Medtr5g015580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52144.1.S1_at	A	A1TS	POPTR_0003s08520	POPTR_0003s08520 (10)	scaffold_3:9919575-9920115(-) (10)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g41930.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.52156.2.A1_a_at	A	A1TS	POPTR_0004s08950	POPTR_0004s08950 (11)	scaffold_4:7510848-7512936(-) (11)	NA	Q8GW20	"Uncharacterized protein At5g03900, chloroplastic"	AT5G03900.2	Iron-sulphur cluster biosynthesis family protein 	LOC_Os02g33010.1	expressed protein	Medtr7g029720.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52166.1.A1_at	A	A1TS	POPTR_0001s31310	POPTR_0001s31310 (10)	scaffold_1:29640540-29642236(-) (10)	NA	Q5R7Q3	Magnesium transporter NIPA2	AT2G21120.1	Protein of unknown function (DUF803) 	LOC_Os05g35570.1	"DUF803 domain containing, putative, expressed"	Medtr4g144260.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52176.1.A1_a_at	A	A1TS	POPTR_0001s15410	POPTR_0001s15410 (11)	scaffold_1:12252548-12252823(+) (11)	NA	Q8L7W2	Nudix hydrolase 8	AT5G47240.1	nudix hydrolase homolog 8 	LOC_Os04g46280.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g105240.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.5219.1.A1_s_at	A	A1TS	POPTR_0018s06720	POPTR_0018s06720 (11)	scaffold_18:6765884-6766151(-) (11)	NA	Q94AA4	6-phosphofructokinase 3	AT4G26270.1	phosphofructokinase 3 	LOC_Os06g05860.1	"6-phosphofructokinase, putative, expressed"	Medtr3g128190.1	Phosphofructokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5219.3.S1_at	A	A1MS	POPTR_0003s18330	POPTR_0003s18330 (10)	scaffold_3:17452317-17452398(+) (10)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G79720.1	Eukaryotic aspartyl protease family protein 	LOC_Os09g25570.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52191.1.S1_at	A	A2TS	POPTR_0001s39390	POPTR_0001s39420 (9)//POPTR_0001s39390 (9)	scaffold_1:38558175-38558453(+) (9)//scaffold_1:38598166-38598459(+) (9)//scaffold_1:38630087-38630365(+) (9)//scaffold_1:38687384-38687665(+) (9)	POPTR_0001s39490 (8)//POPTR_0001s39450 (8)//POPTR_0084s00240 (8)	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.52195.1.A1_at	A	A1TS	POPTR_0013s14470	POPTR_0013s14470 (10)	scaffold_13:14636512-14637260(-) (10)	NA	O75912	Diacylglycerol kinase iota	AT2G20900.2	diacylglycerol kinase 5 	LOC_Os04g54200.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.522.1.S1_at	A	A2TS	POPTR_0014s04070	POPTR_0014s04070 (11)//POPTR_0002s13460 (9)	scaffold_14:3243434-3244476(-) (11)//scaffold_2:9991173-9992197(-) (9)	NA	NA	NA	AT1G75060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g21460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.522.2.S1_at	A	A1TS	POPTR_0002s13460	POPTR_0002s13460 (10)	scaffold_2:9993932-9994315(-) (10)	NA	NA	NA	AT1G19330.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os10g21460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.522.3.A1_s_at	A	A1TS	POPTR_0013s15730	POPTR_0013s15730 (11)	scaffold_13:15635199-15635291(-) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT5G10860.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.4	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5220.1.A1_at	A	A1TS	POPTR_0003s07780	POPTR_0003s07780 (11)	scaffold_3:9312630-9313014(+) (11)	NA	Q86BN8	Protein-tyrosine phosphatase mitochondrial 1-like protein	AT2G35680.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os10g41240.1	"dual specificity protein phosphatase, putative, expressed"	Medtr8g105260.2	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.52205.1.A1_at	A	A1TS	POPTR_0010s16830	POPTR_0010s16830 (11)	scaffold_10:15674013-15674803(+) (11)	NA	NA	NA	AT1G13920.1	Remorin family protein 	LOC_Os10g17790.1	"remorin C-terminal domain containing protein, putative, expressed"	Medtr4g115770.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52205.2.A1_at	A	A1MA	POPTR_0010s16830	POPTR_0010s16830 (9)	scaffold_10:15674334-15674746(-) (9)	NA	NA	NA	AT1G13920.1	Remorin family protein 	LOC_Os10g17790.1	"remorin C-terminal domain containing protein, putative, expressed"	Medtr4g115770.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52208.1.A1_at	A	A1TS	POPTR_0018s06640	POPTR_0018s06640 (11)	scaffold_18:6688278-6689750(+) (11)	NA	Q9SGE9	Probable phenylalanyl-tRNA synthetase beta chain	AT1G72550.1	tRNA synthetase beta subunit family protein 	LOC_Os05g48510.1	"phenylalanyl-tRNA synthetase beta chain, putative, expressed"	Medtr8g115440.1	"Phenylalanyl-tRNA synthetase, beta subunit archae/euk cytosolic "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0003723|RNA binding	NA
PtpAffx.52208.2.A1_a_at	A	A1TS	POPTR_0013s06440	POPTR_0013s06440 (11)	scaffold_13:5021702-5023071(+) (11)	NA	Q9SGE9	Probable phenylalanyl-tRNA synthetase beta chain	AT1G72550.1	tRNA synthetase beta subunit family protein 	LOC_Os05g48510.1	"phenylalanyl-tRNA synthetase beta chain, putative, expressed"	Medtr8g115440.1	"Phenylalanyl-tRNA synthetase, beta subunit archae/euk cytosolic "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0003723|RNA binding	NA
PtpAffx.5221.1.A1_at	A	A1TS	POPTR_0015s00690	POPTR_0015s00690 (11)	scaffold_15:411224-411386(+) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT3G49430.3	SER/ARG-rich protein 34A 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr3g122850.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.5221.1.A1_s_at	A	A1TS	POPTR_0015s00690	POPTR_0015s00690 (11)	scaffold_15:410688-411424(+) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT3G49430.3	SER/ARG-rich protein 34A 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr3g122850.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.52214.1.S1_at	A	A4TS	POPTR_0019s02470	POPTR_0319s00200 (10)//POPTR_0319s00230 (10)//POPTR_0019s02470 (10)//POPTR_1172s00200 (10)	scaffold_1172:288-520(+) (10)//scaffold_19:2257888-2258120(-) (10)//scaffold_319:1135-1367(-) (10)//scaffold_319:17639-17871(-) (10)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os03g61310.1	"receptor-like protein kinase, putative, expressed"	Medtr8g120350.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5224.1.A1_at	A	A1TS	POPTR_0006s27950	POPTR_0006s27950 (11)	scaffold_6:25818478-25819050(+) (11)	NA	Q9C5T4	WRKY transcription factor 18	AT4G31800.2	WRKY DNA-binding protein 18 	LOC_Os09g25060.1	"OsWRKY76 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g022070.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.5224.2.A1_at	A	A1MS	POPTR_0018s02470	POPTR_0018s02470 (10)	scaffold_18:2270870-2271416(+) (10)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os02g08440.1	"OsWRKY71 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g138240.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.52247.1.A1_at	A	A1TS	POPTR_0016s07920	POPTR_0016s07920 (9)	scaffold_16:5748822-5749138(+) (11)	NA	P39144	4'-phosphopantetheinyl transferase	AT3G11470.1	4'-phosphopantetheinyl transferase superfamily 	LOC_Os08g14490.1	"dehydrogenase-phosphopantetheinyltransferase, putative, expressed"	Medtr4g144650.1	4-phosphopantetheinyl transferase 	GO:0009059|macromolecule biosynthetic process	GO:0008897|holo-[acyl-carrier-protein] synthase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.52248.1.A1_at	A	A1TS	POPTR_0001s25910	POPTR_0001s25910 (9)	scaffold_1:24994933-24995374(+) (9)	NA	Q944C1	Phosphoinositide phospholipase C 4	AT5G58700.1	phosphatidylinositol-speciwc phospholipase C4 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr3g093840.1	C2; EF-Hand type; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.52255.1.A1_at	A	A1TA	POPTR_0001s16291	POPTR_0001s16291 (9)	scaffold_1:13091655-13092113(-) (11)	NA	Q43867	Pectinesterase 1	AT1G53840.1	pectin methylesterase 1 	LOC_Os01g13320.1	"pectinesterase, putative, expressed"	Medtr8g026630.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.52267.1.A1_s_at	A	A1TS	POPTR_0002s22820	POPTR_0002s22820 (11)	scaffold_2:19785102-19785215(-) (11)	NA	Q02357	Ankyrin-1	AT2G03430.1	Ankyrin repeat family protein 	LOC_Os03g45290.1	"ankyrin repeat domain-containing protein 50, putative, expressed"	Medtr1g110930.1	Major sperm protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5227.1.A1_s_at	A	A1TS	POPTR_0003s05940	POPTR_0003s05940 (9)	scaffold_3:7306026-7307224(-) (11)	NA	Q8LBK6	"Monothiol glutaredoxin-S15, mitochondrial"	AT3G15660.2	glutaredoxin 4 	LOC_Os01g34620.9	"OsGrx_S15.1 - glutaredoxin subgroup II, expressed"	Medtr2g125790.1	Glutaredoxin-related protein; Glutaredoxin active site 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.52287.1.A1_at	A	A1TS	POPTR_0001s20510	POPTR_0001s20510 (9)	scaffold_1:18474793-18475018(+) (9)	NA	Q5M729	"Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial"	AT1G54220.2	"Dihydrolipoamide acetyltransferase, long form protein "	LOC_Os06g01630.5	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.5230.1.A1_at	A	A1TS	POPTR_0011s04560	POPTR_0011s04560 (10)	scaffold_11:4533110-4533525(-) (10)	NA	NA	NA	AT1G11120.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 270 Blast hits to 255 proteins in 62 species: Archae - 0; Bacteria - 2; Metazoa - 93; Fungi - 14; Plants - 126; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5230.2.A1_at	A	A1TS	POPTR_0004s03750	POPTR_0004s03750 (11)	scaffold_4:2611630-2612022(-) (11)	NA	NA	NA	AT1G11120.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os07g37820.1	expressed protein	Medtr4g125590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52301.1.A1_at	A	A1TS	POPTR_0005s26840	POPTR_0005s26840 (11)	scaffold_5:24703952-24704369(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT4G38430.1	rho guanyl-nucleotide exchange factor 1 	LOC_Os09g37270.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr3g092590.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.52305.1.S1_a_at	A	A1TS	POPTR_0010s08200	POPTR_0010s08200 (11)	scaffold_10:9147412-9147661(+) (11)	NA	Q96524	Cryptochrome-2	AT1G04400.1	cryptochrome 2 	LOC_Os02g41550.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr1g042700.1	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.52305.1.S1_at	A	A1TS	POPTR_0010s08200	POPTR_0010s08200 (11)	scaffold_10:9147121-9147423(+) (11)	NA	Q96524	Cryptochrome-2	AT1G04400.1	cryptochrome 2 	LOC_Os02g41550.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr1g042700.1	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.52305.2.S1_at	A	A1TS	POPTR_0010s08200	POPTR_0010s08200 (11)	scaffold_10:9147702-9148001(+) (11)	NA	Q96524	Cryptochrome-2	AT1G04400.1	cryptochrome 2 	LOC_Os02g41550.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr1g042700.1	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.52306.1.A1_at	A	A1TS	POPTR_0002s17930	POPTR_0002s17930 (11)	scaffold_2:13769902-13770401(-) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G00820.1	IQ-domain 17 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g067020.2	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52310.1.S1_at	A	A2TS	POPTR_0012s06230	POPTR_0012s06230 (10)//POPTR_0012s06260 (10)	scaffold_12:6327949-6328512(+) (10)//scaffold_12:6469682-6470245(-) (10)	NA	O13983	Putative ATP-dependent helicase hrq1	AT5G08110.1	nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases 	LOC_Os07g41564.1	"DEAD/DEAH box helicase domain protein, putative"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.5232.1.A1_at	A	A1TS	POPTR_0001s43030	POPTR_0001s43030 (11)	scaffold_1:43089052-43090256(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52320.1.S1_at	A	A1TS	POPTR_0008s18390	POPTR_0008s18390 (9)	scaffold_8:12364085-12365949(+) (9)	NA	Q6DRB1	Nucleoporin GLE1	AT1G13120.1	embryo defective 1745 	LOC_Os02g38250.1	"EMB1745, putative, expressed"	Medtr3g102590.1	GLE1-like 	GO:0016973|poly(A)+ mRNA export from nucleus	NA	GO:0005643|nuclear pore
PtpAffx.52325.1.S1_s_at	A	A1TS	POPTR_0014s11920	POPTR_0014s11920 (11)	scaffold_14:8830609-8831702(+) (11)	NA	Q71VM4	Importin subunit alpha-1a	AT3G06720.2	importin alpha isoform 1 	LOC_Os01g14950.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.52325.2.A1_s_at	A	A1TS	POPTR_0002s20060	POPTR_0002s20060 (11)	scaffold_2:15999804-16000826(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os01g14950.1	"importin subunit alpha, putative, expressed"	Medtr2g039000.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.5233.1.A1_at	A	A1TS	POPTR_0007s12080	POPTR_0007s12080 (10)	scaffold_7:12393582-12395617(+) (10)	NA	Q66GI1	UPF0497 membrane protein At4g37235	AT4G37235.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g55870.1	"membrane associated DUF588 domain containing protein, putative, expressed"	AC157372_7.1	Protein of unknown function DUF588 AC157372.2 49878-51765 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.52359.1.S1_at	A	A1TS	POPTR_0010s23690	POPTR_0010s23690 (11)	scaffold_10:20190137-20191143(-) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G04420.3	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g57690.2	"kelch repeat protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5236.2.A1_a_at	A	A1TS	POPTR_0004s24340	POPTR_0004s24340 (11)	scaffold_4:23023278-23023677(+) (11)	NA	Q8L7A9	AP-4 complex subunit epsilon	AT1G31730.1	Adaptin family protein 	LOC_Os01g68750.1	"adaptin, putative, expressed"	Medtr8g086710.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.52361.1.A1_s_at	A	A1TS	POPTR_0012s14490	POPTR_0012s14490 (11)	scaffold_12:14360952-14361144(+) (11)	NA	NA	NA	AT5G51550.1	EXORDIUM like 3 	LOC_Os06g04250.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52361.2.A1_s_at	A	A1TS	POPTR_0012s14490	POPTR_0012s14490 (11)	scaffold_12:14361339-14361449(+) (11)	NA	NA	NA	AT5G51550.1	EXORDIUM like 3 	LOC_Os06g04250.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52368.1.S1_s_at	A	A2TS	POPTR_0001s07920	POPTR_0003s11450 (9)//POPTR_0001s07920 (9)	scaffold_1:6000136-6000603(-) (11)//scaffold_3:12247259-12247463(-) (9)	NA	Q94AZ4	Probable calcium-binding protein CML13	AT1G12310.1	Calcium-binding EF-hand family protein 	LOC_Os08g02420.1	"OsCML7 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g012030.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52389.1.S1_at	A	A1TS	POPTR_0003s11090	POPTR_0003s11090 (9)	scaffold_3:11946362-11947765(-) (9)	NA	Q940Y1	Oxysterol-binding protein-related protein 2A	AT4G22540.1	OSBP(oxysterol binding protein)-related protein 2A 	LOC_Os10g40590.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.5239.2.S1_a_at	A	A1TS	POPTR_0005s06770	POPTR_0005s06770 (11)	scaffold_5:4537548-4537619(+) (11)	NA	A2BGR3	DNA excision repair protein ERCC-6-like	AT5G63950.1	chromatin remodeling 24 	LOC_Os04g59624.2	"SNF2 family N-terminal domain containing protein, expressed"	Medtr4g143200.1	"DNA excision repair protein ERCC-6-like, related "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.52399.1.S1_at	A	A1TS	POPTR_0019s04070	POPTR_0019s04070 (11)	scaffold_19:4154427-4155493(+) (11)	NA	Q9M7T0	"Peroxiredoxin-2F, mitochondrial"	AT3G06050.1	peroxiredoxin IIF 	LOC_Os01g16152.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.52404.1.S1_s_at	A	A1TS	POPTR_0003s06780	POPTR_0003s06780 (11)	scaffold_3:8309676-8310191(-) (11)	NA	NA	NA	AT3G14170.1	Plant protein of unknown function (DUF936) 	LOC_Os03g08390.2	expressed protein	Medtr5g035680.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52407.1.S1_s_at	A	A1TS	POPTR_0011s16900	POPTR_0011s16900 (11)	scaffold_11:18622902-18623292(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g104410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5241.1.S1_at	A	A1TS	POPTR_0003s18290	POPTR_0003s18290 (11)	scaffold_3:17431405-17431745(-) (11)	NA	O80927	RING-H2 finger protein ATL33	AT2G37580.1	RING/U-box superfamily protein 	LOC_Os06g34620.1	"Zinc finger, C3HC4 type domain containing protein"	Medtr4g023620.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52414.1.S1_at	A	A1TS	POPTR_0018s05260	POPTR_0018s05260 (11)	scaffold_18:4769135-4769388(-) (11)	NA	NA	NA	AT5G11890.1	FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g39290.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr3g139940.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.52429.1.S1_at	A	A1TS	POPTR_0002s11990	POPTR_0002s11990 (11)	scaffold_2:8909085-8910659(+) (11)	NA	O00458	Interferon-related developmental regulator 1	AT1G27760.1	interferon-related developmental regulator family protein / IFRD protein family 	LOC_Os07g39900.1	"interferon-related developmental regulator, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5244.1.S1_a_at	A	A2TS	POPTR_0008s10260	POPTR_0008s10260 (11)//POPTR_0010s15790 (11)	scaffold_10:14907432-14907578(+) (11)//scaffold_8:6425249-6425395(-) (11)	NA	Q54C25	GPN-loop GTPase 1 homolog	AT4G21800.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g19870.3	"ATP binding protein, putative, expressed"	Medtr1g126710.1	"Protein of unknown function, ATP binding "	NA	GO:0000166|nucleotide binding	NA
PtpAffx.5244.1.S1_at	A	A1TS	POPTR_0010s15790	POPTR_0010s15790 (11)	scaffold_10:14907453-14908094(+) (11)	NA	Q54C25	GPN-loop GTPase 1 homolog	AT4G21800.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g19870.3	"ATP binding protein, putative, expressed"	Medtr1g126710.1	"Protein of unknown function, ATP binding "	NA	GO:0000166|nucleotide binding	NA
PtpAffx.5244.2.S1_a_at	A	A1TS	POPTR_0008s10260	POPTR_0008s10260 (11)	scaffold_8:6424689-6425374(-) (11)	NA	Q54C25	GPN-loop GTPase 1 homolog	AT4G21800.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g19870.3	"ATP binding protein, putative, expressed"	Medtr1g126710.1	"Protein of unknown function, ATP binding "	NA	GO:0000166|nucleotide binding	NA
PtpAffx.5245.1.A1_at	A	A1TA	POPTR_0007s12645	POPTR_0007s12645 (11)	scaffold_7:12899851-12900072(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52454.1.A1_at	A	A1TS	POPTR_0005s15170	POPTR_0005s15170 (11)	scaffold_5:11951489-11951910(+) (11)	NA	NA	NA	AT5G16220.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os01g04650.1	"PB1 domain containing protein, expressed"	Medtr8g096190.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5249.1.A1_at	A	A1MS	POPTR_0001s18720	POPTR_0001s18720 (11)	scaffold_1:15859498-15859898(+) (11)	NA	NA	NA	AT3G16230.3	Predicted eukaryotic LigT 	LOC_Os01g13100.1	"KH domain containing protein, putative, expressed"	Medtr2g122410.1	Appr>p cyclic nucleotide phosphodiesterase 	NA	GO:0003723|RNA binding	NA
PtpAffx.525.1.S1_at	A	A1TS	POPTR_0001s20760	POPTR_0001s20760 (11)	scaffold_1:18922562-18922941(+) (11)	NA	Q9SCW1	Beta-galactosidase 1	AT3G13750.1	beta galactosidase 1 	LOC_Os01g39830.1	"beta-galactosidase, putative, expressed"	Medtr2g121320.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.525.2.S1_at	A	A1MS	POPTR_0003s03060	POPTR_0003s03060 (10)	scaffold_3:3418999-3419348(+) (10)	NA	Q9SCW1	Beta-galactosidase 1	AT3G13750.1	beta galactosidase 1 	LOC_Os01g39830.1	"beta-galactosidase, putative, expressed"	Medtr2g121320.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.5250.1.A1_a_at	A	A1TS	POPTR_0005s12450	POPTR_0005s12450 (11)	scaffold_5:9216894-9217167(-) (11)	NA	NA	NA	AT3G01360.2	Family of unknown function (DUF716)  	LOC_Os06g13160.1	"viral-response family protein, expressed"	Medtr2g026770.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52508.1.S1_x_at	A	A2TS	POPTR_0010s17870	POPTR_0010s17870 (11)//POPTR_0008s08400 (9)	scaffold_10:16314554-16314914(+) (11)//scaffold_8:5207280-5207516(-) (9)	NA	Q42962	"Phosphoglycerate kinase, cytosolic"	AT1G79550.2	phosphoglycerate kinase 	LOC_Os06g45710.1	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077490.2	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
PtpAffx.5251.1.A1_at	A	A1TS	POPTR_0006s26210	POPTR_0006s26210 (11)	scaffold_6:24478997-24479193(-) (11)	NA	NA	NA	AT2G25680.1	molybdate transporter 1 	LOC_Os08g01120.1	"sulfate transporter, putative, expressed"	Medtr3g135970.1	Sulphate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5251.1.A1_s_at	A	A1TS	POPTR_0006s26210	POPTR_0006s26210 (11)	scaffold_6:24479074-24479538(-) (11)	NA	NA	NA	AT2G25680.1	molybdate transporter 1 	LOC_Os08g01120.1	"sulfate transporter, putative, expressed"	Medtr3g135970.1	Sulphate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5252.1.A1_at	A	A1TS	POPTR_0010s09190	POPTR_0010s09190 (9)	scaffold_10:10054143-10055205(-) (9)	NA	Q769F9	Transmembrane emp24 domain-containing protein A	AT3G22845.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os03g53310.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr5g105940.3	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.5254.1.A1_at	A	A1TS	POPTR_0006s05370	POPTR_0006s05370 (10)	scaffold_6:3793824-3794286(-) (10)	NA	NA	NA	AT3G52110.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages. 	LOC_Os03g07810.1	expressed protein	Medtr7g110930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52548.1.A1_at	A	A1TS	POPTR_0009s15100	POPTR_0009s15100 (11)	scaffold_9:11709901-11710230(+) (11)	NA	Q9SGD6	"Arogenate dehydratase/prephenate dehydratase 6, chloroplastic"	AT1G08250.1	arogenate dehydratase 6 	LOC_Os04g33390.1	"prephenate dehydratase domain containing protein, expressed"	Medtr4g073340.1	Prephenate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process	GO:0004664|prephenate dehydratase activity	NA
PtpAffx.52589.1.S1_at	A	A1TS	POPTR_0021s00750	POPTR_0021s00750 (11)	scaffold_21:410497-411259(-) (11)	NA	Q9ZSA2	Calcium-dependent protein kinase 21	AT4G04720.1	calcium-dependent protein kinase 21 	LOC_Os07g33110.4	"CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g100110.1	Protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5260.1.A1_at	A	A1MS	POPTR_0003s15220	POPTR_0003s15220 (11)	scaffold_3:15077886-15078124(-) (11)	NA	Q9Y253	DNA polymerase eta	AT5G44740.2	Y-family DNA polymerase H 	LOC_Os01g55300.1	"DNA-directed polymerase, putative, expressed"	AC235671_13.1	UMUC-like DNA-repair protein AC235671.2 55734-58183 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
PtpAffx.52603.1.S1_s_at	A	A2TS	POPTR_0008s00930	POPTR_0010s25640 (11)//POPTR_0008s00930 (11)	scaffold_10:21227474-21227526(-) (11)//scaffold_8:443979-444031(+) (11)	NA	Q06450	"ATP synthase subunit epsilon, mitochondrial"	AT1G51650.1	"ATP synthase epsilon chain, mitochondrial "	LOC_Os08g15170.1	"ATP synthase epsilon chain, mitochondrial, putative, expressed"	Medtr5g043990.1	Mitochondrial ATP synthase epsilon chain 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0000275|""mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"""
PtpAffx.5261.1.A1_at	A	A1TS	POPTR_0002s06000	POPTR_0002s06000 (11)	scaffold_2:3985172-3985502(-) (11)	NA	Q8VWJ2	Probable WRKY transcription factor 28	AT4G18170.1	WRKY DNA-binding protein 28 	LOC_Os01g43650.2	"OsWRKY11 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g098600.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.5262.1.S1_a_at	A	A1TS	POPTR_0019s08680	POPTR_0019s08680 (11)	scaffold_19:10221333-10221488(+) (11)	NA	Q9ZTS1	Probable methionyl-tRNA synthetase	AT2G40660.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g60660.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	NA	GO:0000049|tRNA binding	NA
PtpAffx.52630.1.A1_at	A	A1TS	POPTR_0006s25620	POPTR_0006s25620 (11)	scaffold_6:23994723-23995168(-) (11)	NA	O82316	Aquaporin TIP4-1	AT2G25810.1	tonoplast intrinsic protein 4;1 	LOC_Os05g14240.1	"aquaporin protein, putative, expressed"	Medtr1g007370.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.52652.1.A1_at	A	A1TS	POPTR_0003s12410	POPTR_0003s12410 (10)	scaffold_3:12986387-12986797(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52659.1.A1_at	A	A1TS	POPTR_0001s24200	POPTR_0001s24200 (10)	scaffold_1:23557551-23558105(+) (10)	NA	O82598	Aquaporin TIP1-3	AT4G01470.1	tonoplast intrinsic protein 1;3 	LOC_Os01g74450.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.5266.1.A1_at	A	A1TS	POPTR_0003s01740	POPTR_0003s01740 (11)	scaffold_3:1617376-1617696(+) (11)	NA	Q94F62	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	AT4G33430.1	BRI1-associated receptor kinase 	LOC_Os08g07760.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g008510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.52660.1.S1_a_at	A	A1TS	POPTR_0010s11080	POPTR_0010s11080 (11)	scaffold_10:11451083-11451152(+) (11)	NA	NA	NA	AT2G37870.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g62980.1	"LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52660.1.S1_at	A	A1TS	POPTR_0010s11080	POPTR_0010s11080 (11)	scaffold_10:11449894-11450164(+) (11)	NA	NA	NA	AT2G37870.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g62980.1	"LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52660.2.S1_at	A	A1MS	POPTR_0010s11080	POPTR_0010s11080 (11)	scaffold_10:11450531-11451174(+) (11)	NA	NA	NA	AT2G37870.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g62980.1	"LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5267.1.A1_at	A	A1TS	POPTR_0009s05650	POPTR_0009s05650 (11)	scaffold_9:5696237-5697366(-) (11)	NA	NA	NA	AT5G12470.1	Protein of unknown function (DUF3411) 	LOC_Os05g32230.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52678.1.A1_at	A	A1TS	POPTR_0010s04880	POPTR_0010s04880 (11)	scaffold_10:6065432-6068749(+) (11)	NA	NA	NA	AT1G69980.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g38750.1	expressed protein	Medtr5g038130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5268.1.A1_at	A	A1TS	POPTR_0010s04470	POPTR_0010s04470 (11)	scaffold_10:5559761-5560111(+) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G69910.1	Protein kinase superfamily protein 	LOC_Os03g58750.1	"protein kinase domain containing protein, expressed"	Medtr5g038490.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5269.2.A1_a_at	A	A1TS	POPTR_0016s05750	POPTR_0016s05750 (11)	scaffold_16:3697142-3697802(+) (11)	NA	Q9SS44	Transcription initiation factor IIB-2	AT3G10330.1	Cyclin-like family protein 	LOC_Os09g36440.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g108460.1	Cyclin-like; ; 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0008270|zinc ion binding||GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.5269.3.S1_s_at	A	A1TS	POPTR_0006s04700	POPTR_0006s04700 (11)	scaffold_6:3228353-3228890(-) (11)	NA	Q9SS44	Transcription initiation factor IIB-2	AT3G10330.1	Cyclin-like family protein 	LOC_Os09g36440.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g108460.1	Cyclin-like; ; 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0008270|zinc ion binding||GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.5269.4.S1_at	A	A1MS	POPTR_0006s04700	POPTR_0006s04700 (11)	scaffold_6:3228634-3228694(-) (11)	NA	Q9SS44	Transcription initiation factor IIB-2	AT3G10330.1	Cyclin-like family protein 	LOC_Os09g36440.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g108460.1	Cyclin-like; ; 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0008270|zinc ion binding||GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.5269.5.S1_s_at	A	A2TS	POPTR_0006s04700	POPTR_0006s04700 (11)//POPTR_0016s05750 (10)	scaffold_16:3693728-3696279(+) (10)//scaffold_6:3230010-3232521(-) (11)	NA	Q9SS44	Transcription initiation factor IIB-2	AT3G10330.1	Cyclin-like family protein 	LOC_Os09g36440.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g108460.1	Cyclin-like; ; 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0008270|zinc ion binding||GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.5270.1.A1_at	A	A1TS	POPTR_0005s06710	POPTR_0005s06710 (10)	scaffold_5:4507695-4508035(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52705.1.A1_at	A	A1TS	POPTR_0016s01100	POPTR_0016s01100 (11)	scaffold_16:443160-443313(+) (11)	NA	NA	NA	AT4G16450.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. "	LOC_Os08g33460.1	expressed protein	Medtr2g030480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52705.1.A1_s_at	A	A2TS	POPTR_0006s01740	POPTR_0016s01100 (11)//POPTR_0006s01740 (11)	scaffold_16:442708-443113(+) (11)//scaffold_6:1068817-1069216(-) (11)	NA	NA	NA	AT4G16450.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. "	LOC_Os08g33460.1	expressed protein	Medtr2g030480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52716.1.A1_s_at	A	A2TS	POPTR_0004s09350	POPTR_0004s09350 (11)//POPTR_0229s00200 (11)	scaffold_229:116-571(+) (11)//scaffold_4:7898907-7899362(+) (11)	NA	Q9LF46	2-hydroxyacyl-CoA lyase	AT5G17380.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os01g32080.1	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr3g150570.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.52716.2.A1_s_at	A	A1TS	POPTR_0004s09350	POPTR_0004s09350 (11)	scaffold_229:3087-3412(+) (10)//scaffold_4:7901827-7902151(+) (11)	NA	Q9LF46	2-hydroxyacyl-CoA lyase	AT5G17380.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os01g32080.1	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr3g150570.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.52716.3.A1_at	A	A2TA	POPTR_0004s09350	POPTR_0229s00210 (10)//POPTR_0004s09350 (10)	scaffold_229:3009-3051(-) (10)//scaffold_4:7901749-7901791(-) (10)	NA	Q9LF46	2-hydroxyacyl-CoA lyase	AT5G17380.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os01g32080.1	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr3g150570.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.52722.1.A1_at	A	A1TS	POPTR_0010s12740	POPTR_0010s12740 (11)	scaffold_10:12708245-12708791(-) (11)	NA	P54086	Uncharacterized protein sll0194	AT2G01110.1	Sec-independent periplasmic protein translocase 	LOC_Os01g31680.2	"uncharacterized protein sll0194, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5273.1.A1_at	A	A1TS	POPTR_0011s11810	POPTR_0011s11810 (11)	scaffold_11:14609651-14609945(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G23560.1	MATE efflux family protein 	LOC_Os07g31884.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.5274.1.A1_at	A	A1MS	POPTR_0008s07470	POPTR_0008s07470 (9)	scaffold_8:4583353-4583420(+) (9)	NA	Q39635	Uncharacterized 38.1 kDa protein	AT2G40410.2	Staphylococcal nuclease homologue 	LOC_Os01g07200.1	"staphylococcal nuclease homologue, putative, expressed"	Medtr5g091150.1	Staphylococcus nuclease (SNase-like) 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds""||GO:0003676|nucleic acid binding"	NA
PtpAffx.5274.1.A1_s_at	A	A1TS	POPTR_0008s07470	POPTR_0008s07470 (11)	scaffold_8:4582815-4583155(+) (11)	NA	Q39635	Uncharacterized 38.1 kDa protein	AT2G40410.2	Staphylococcal nuclease homologue 	LOC_Os01g07200.1	"staphylococcal nuclease homologue, putative, expressed"	Medtr5g091150.1	Staphylococcus nuclease (SNase-like) 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds""||GO:0003676|nucleic acid binding"	NA
PtpAffx.52747.1.A1_at	A	A1TS	POPTR_0012s04490	POPTR_0012s04490 (11)	scaffold_12:3782877-3783289(+) (11)	NA	Q9FR44	Phosphoethanolamine N-methyltransferase 1	AT1G48600.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50030.1	"CPuORF25 - conserved peptide uORF-containing transcript, expressed"	Medtr6g083400.1	"Phosphoethanolamine N-methyltransferase, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.52747.1.A1_x_at	A	A1TS	POPTR_0012s04490	POPTR_0012s04490 (11)	scaffold_12:3782462-3783289(+) (11)	NA	Q9FR44	Phosphoethanolamine N-methyltransferase 1	AT1G48600.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50030.1	"CPuORF25 - conserved peptide uORF-containing transcript, expressed"	Medtr6g083400.1	"Phosphoethanolamine N-methyltransferase, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.52747.2.A1_a_at	A	A2TS	POPTR_0012s04490	POPTR_0015s04540 (11)//POPTR_0012s04490 (11)	scaffold_12:3782042-3782502(+) (11)//scaffold_15:4688484-4688951(-) (10)	NA	Q9FR44	Phosphoethanolamine N-methyltransferase 1	AT1G48600.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50030.1	"CPuORF25 - conserved peptide uORF-containing transcript, expressed"	Medtr6g083400.1	"Phosphoethanolamine N-methyltransferase, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.52747.2.A1_at	A	A1TS	POPTR_0015s04540	POPTR_0015s04540 (9)	scaffold_15:4687767-4688282(-) (9)	NA	Q9FR44	Phosphoethanolamine N-methyltransferase 1	AT1G48600.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50030.1	"CPuORF25 - conserved peptide uORF-containing transcript, expressed"	Medtr6g083400.1	"Phosphoethanolamine N-methyltransferase, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.5277.2.A1_a_at	A	A1TS	POPTR_0011s11200	POPTR_0011s11200 (11)	scaffold_11:13954297-13954832(+) (11)	NA	Q8VDI9	"Alpha-1,2-mannosyltransferase ALG9"	AT1G16900.1	Alg9-like mannosyltransferase family 	LOC_Os01g11070.1	"Alg9-like mannosyltransferase protein, putative, expressed"	Medtr2g092360.1	Alg9-like mannosyltransferase 	GO:0006506|GPI anchor biosynthetic process	"GO:0016757|""transferase activity, transferring glycosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.52788.1.S1_s_at	A	A1TS	POPTR_0001s40250	POPTR_0001s40250 (11)	scaffold_1:39616050-39617060(+) (11)	NA	Q02909	"Phosphoenolpyruvate carboxylase, housekeeping isozyme"	AT3G14940.1	phosphoenolpyruvate carboxylase 3 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.5280.1.S1_at	A	A1TS	POPTR_0010s08590	POPTR_0010s08590 (11)	scaffold_10:9498344-9498709(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52805.1.A1_at	A	A1TS	POPTR_0004s13440	POPTR_0004s13440 (11)	scaffold_4:13494479-13495316(-) (11)	NA	Q9LU10	"Protease Do-like 8, chloroplastic"	AT5G39830.1	Trypsin family protein with PDZ domain 	LOC_Os04g38640.1	"OsDegp5 - Putative Deg protease homologue, expressed"	Medtr6g006560.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.5281.1.S1_a_at	A	A1TS	POPTR_0014s13850	POPTR_0014s13850 (11)	scaffold_14:10129354-10130875(+) (11)	NA	P49299	"Citrate synthase, glyoxysomal"	AT3G58750.1	citrate synthase 2 	LOC_Os02g13840.1	"citrate synthase, putative, expressed"	Medtr5g099240.1	Citrate synthase 	GO:0044262|cellular carbohydrate metabolic process	"GO:0046912|""transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer"""	NA
PtpAffx.52814.1.S1_at	A	A1TS	POPTR_0009s14270	POPTR_0009s14270 (9)	scaffold_9:11220436-11220897(+) (9)	NA	NA	NA	AT2G41990.1	"CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G35170.1); Has 172 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os04g59330.1	expressed protein	Medtr6g086340.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.52826.1.A1_at	A	A1TS	POPTR_0015s04050	POPTR_0015s04050 (11)	scaffold_15:3967906-3968344(-) (11)	NA	Q39108	"Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic"	AT4G38460.1	geranylgeranyl reductase 	LOC_Os02g44780.3	"polyprenyl synthetase, putative, expressed"	Medtr5g100210.1	Polyprenyl synthetase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5283.1.A1_at	A	A1TS	POPTR_0018s04190	POPTR_0018s04190 (11)	scaffold_18:3540267-3540643(+) (11)	NA	Q8N8Q3	Putative endonuclease FLJ39025	AT4G31150.1	endonuclease V family protein 	LOC_Os06g45330.1	"endonuclease V, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004519|endonuclease activity	NA
PtpAffx.5284.1.S1_at	A	A1TS	POPTR_0009s01910	POPTR_0009s01910 (11)	scaffold_9:2380280-2380828(-) (11)	NA	NA	NA	AT3G45230.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g110460.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5285.1.A1_at	A	A1MS	POPTR_0009s07170	POPTR_0009s07170 (10)	scaffold_9:6769552-6769749(-) (10)	NA	Q5BIV3	Pentatricopeptide repeat-containing protein At1g11900	AT1G11900.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g40320.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g007140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5285.1.A1_s_at	A	A1TS	POPTR_0009s07170	POPTR_0009s07170 (11)	scaffold_9:6769244-6769514(-) (11)	NA	Q5BIV3	Pentatricopeptide repeat-containing protein At1g11900	AT1G11900.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g40320.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g007140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52853.1.A1_at	A	A1TS	POPTR_0002s24740	POPTR_0002s24740 (10)	scaffold_2:22021179-22022277(-) (10)	NA	NA	NA	AT3G25120.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os04g30740.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.5287.1.S1_a_at	A	A2MS	POPTR_0008s15350	POPTR_0008s15350 (11)//POPTR_1611s00200 (11)	scaffold_1611:1002-1608(+) (11)//scaffold_8:10229332-10229938(-) (11)	NA	NA	NA	AT2G32090.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os03g45720.1	"glyoxalase family protein, putative, expressed"	Medtr5g006460.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5287.2.S1_a_at	A	A3TS	POPTR_0008s15350	POPTR_0008s15350 (11)//POPTR_0010s09700 (11)//POPTR_1611s00200 (11)	scaffold_10:10398676-10398808(+) (11)//scaffold_1611:1395-1527(+) (11)//scaffold_8:10229415-10229545(-) (11)	NA	NA	NA	AT2G32090.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os03g45720.1	"glyoxalase family protein, putative, expressed"	Medtr5g006460.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5287.2.S1_at	A	A1TS	POPTR_0010s09700	POPTR_0010s09700 (10)	scaffold_10:10397932-10398987(+) (10)	NA	NA	NA	AT2G32090.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os03g45720.1	"glyoxalase family protein, putative, expressed"	Medtr5g006460.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52902.1.A1_at	A	A1TS	POPTR_0006s02560	POPTR_0006s02560 (11)	scaffold_6:1656545-1658044(-) (11)	NA	Q0WTI8	Chaperone protein dnaJ 72	AT2G41000.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	Medtr6g018000.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.52907.1.S1_at	A	A1TS	POPTR_0006s06400	POPTR_0006s06400 (11)	scaffold_6:4565494-4565722(+) (11)	NA	NA	NA	AT2G10950.1	BSD domain-containing protein 	LOC_Os05g43520.2	"BSD, putative, expressed"	Medtr8g121460.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5291.1.A1_at	A	A1TS	POPTR_0015s12230	POPTR_0015s12230 (11)	scaffold_15:12579092-12580803(+) (11)	NA	O14327	Polyadenylate-binding protein 2	AT5G65260.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.2	"RNA recognition motif containing protein, putative, expressed"	Medtr1g087160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.52910.1.S1_s_at	A	A1TS	POPTR_0017s09190	POPTR_0017s09190 (11)	scaffold_17:7839833-7840321(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35260.1	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr1g132860.2	"Tyrosine protein kinase; Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52935.1.A1_a_at	A	A1TS	POPTR_0006s24710	POPTR_0006s24710 (11)	scaffold_6:23299224-23299684(+) (11)	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.1	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os02g13110.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52939.1.S1_at	A	A1TS	POPTR_0014s14550	POPTR_0014s14550 (9)	scaffold_14:10652468-10653011(-) (9)	NA	Q9QY93	dCTP pyrophosphatase 1	AT3G25400.1	"CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). "	LOC_Os02g27810.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	Medtr7g046000.1	MazG nucleotide pyrophosphohydrolase; Pyrophosphohydrolase MazG RS21-C6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52946.1.S1_at	A	A1TS	POPTR_0004s19940	POPTR_0004s19940 (11)	scaffold_4:19601250-19601787(+) (11)	NA	Q3E7D0	Nucleobase-ascorbate transporter 12	AT2G27810.1	nucleobase-ascorbate transporter 12 	LOC_Os01g63870.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr4g073310.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.5298.1.A1_at	A	A1TS	POPTR_0013s06290	POPTR_0013s06290 (11)	scaffold_13:4723356-4723819(+) (11)	NA	Q8LFV3	Dof zinc finger protein DOF3.3	AT3G47500.1	cycling DOF factor 3 	LOC_Os01g15900.1	expressed protein	Medtr7g103580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.52999.1.S1_at	A	A1TS	POPTR_0014s02370	POPTR_0014s02370 (11)	scaffold_14:1989008-1989160(+) (11)	NA	Q9C626	F-box protein At1g47056	AT1G47056.1	VIER F-box proteine 1 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53016.1.S1_s_at	A	A1TS	POPTR_0014s02580	POPTR_0014s02580 (11)	scaffold_14:2153333-2153851(+) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os02g15340.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.53019.1.S1_s_at	A	A1TS	POPTR_0005s05230	POPTR_0005s05230 (11)	scaffold_5:3459729-3461495(-) (11)	NA	Q9SE20	"Zeta-carotene desaturase, chloroplastic/chromoplastic"	AT3G04870.2	zeta-carotene desaturase 	LOC_Os07g10490.1	"zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed"	Medtr1g096350.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.53040.1.S1_at	A	A1TS	POPTR_0001s40850	POPTR_0001s40850 (10)	scaffold_1:40446795-40447107(-) (10)	NA	NA	NA	AT1G53163.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15250.1); Has 315 Blast hits to 216 proteins in 74 species: Archae - 0; Bacteria - 86; Metazoa - 43; Fungi - 52; Plants - 27; Viruses - 1; Other Eukaryotes - 106 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53059.1.S1_at	A	A1TS	POPTR_0005s08340	POPTR_0005s08340 (10)	scaffold_5:5749773-5750095(+) (10)	NA	Q14103	Heterogeneous nuclear ribonucleoprotein D0	AT2G41060.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g16090.1	"RNA binding protein, putative, expressed"	Medtr5g095270.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.5307.1.A1_at	A	A1TS	POPTR_0005s02430	POPTR_0005s02430 (11)	scaffold_5:1563145-1564618(-) (11)	NA	Q9M9W1	60S ribosomal protein L22-2	AT3G05560.3	Ribosomal L22e protein family 	LOC_Os07g47710.1	"60S ribosomal protein L22-2, putative, expressed"	Medtr1g108350.1	Ribosomal L22e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.5307.3.A1_a_at	A	A1TS	POPTR_0007s03920	POPTR_0007s03920 (11)	scaffold_7:2332585-2333065(+) (11)	NA	P83326	Pectinesterase inhibitor	AT5G64620.1	cell wall / vacuolar inhibitor of fructosidase 2 	LOC_Os08g01670.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g143630.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.53076.1.S1_at	A	A1TS	POPTR_0019s05340	POPTR_0019s05340 (11)	scaffold_19:5640975-5641751(-) (11)	NA	Q23892	Lysosomal beta glucosidase	AT5G20950.2	Glycosyl hydrolase family protein 	LOC_Os03g53800.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.53090.1.S1_at	A	A1TS	POPTR_0006s23950	POPTR_0006s23950 (11)	scaffold_6:22673161-22675301(-) (11)	NA	Q10166	UPF0012 hydrolase C26A3.11	AT5G12040.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein 	LOC_Os03g07910.1	"nitrilase, putative, expressed"	Medtr3g139470.1	Protein of unknown function UPF0012 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.5310.1.S1_at	A	A1TS	POPTR_0015s07650	POPTR_0015s07650 (11)	scaffold_15:8952487-8953482(-) (11)	NA	NA	NA	AT5G62720.1	Integral membrane HPP family protein 	LOC_Os03g48030.1	"integral membrane HPP family protein, putative, expressed"	Medtr8g113070.1	HPP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5311.1.S1_at	A	A1TS	POPTR_0005s12800	POPTR_0005s12800 (11)	scaffold_5:9617564-9618302(-) (11)	NA	Q9SDY5	NEDD8-conjugating enzyme Ubc12	AT4G36800.2	RUB1 conjugating enzyme 1 	LOC_Os10g11260.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.53113.1.S1_at	A	A1TS	POPTR_0009s12000	POPTR_0009s12000 (11)	scaffold_9:9887757-9888911(+) (11)	NA	Q8GY61	Transcription factor bHLH63	AT4G34530.1	cryptochrome-interacting basic-helix-loop-helix 1 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr3g162340.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.5312.1.A1_at	A	A1MS	POPTR_0010s01830	POPTR_0010s01830 (11)	scaffold_10:2007902-2008417(+) (11)	NA	Q8YXY3	Isoleucyl-tRNA synthetase	AT5G49030.3	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os02g53770.1	"tRNA synthetase class I, putative, expressed"	Medtr4g104390.1	"Aminoacyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.53128.1.S1_at	A	A1TS	POPTR_0004s22660	POPTR_0004s22660 (11)	scaffold_4:21508877-21511034(-) (11)	NA	P25864	"50S ribosomal protein L9, chloroplastic"	AT3G44890.1	ribosomal protein L9 	LOC_Os02g57670.1	"ribosomal L9, putative, expressed"	Medtr4g076130.1	Ribosomal protein L9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53131.1.S1_at	A	A1TS	POPTR_0009s10580	POPTR_0009s10580 (11)	scaffold_9:9067806-9068155(+) (11)	NA	Q8BGC4	Zinc-binding alcohol dehydrogenase domain-containing protein 2	AT1G49670.1	ARP protein (REF) 	LOC_Os09g28570.1	"zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed"	Medtr4g129440.1	"Alcohol dehydrogenase superfamily, zinc-containing; Short-chain dehydrogenase/reductase SDR; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.53139.1.S1_at	A	A1TS	POPTR_0011s09500	POPTR_0011s09500 (11)	scaffold_11:11796129-11796455(+) (11)	NA	Q9FLP0	65-kDa microtubule-associated protein 1	AT5G55230.1	microtubule-associated proteins 65-1 	LOC_Os06g20370.1	"microtubule associated protein, putative, expressed"	Medtr5g101260.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53149.1.S1_at	A	A1TS	POPTR_0014s15900	POPTR_0014s15900 (9)	scaffold_14:11987934-11988275(+) (9)	NA	NA	NA	AT1G04960.1	Protein of unknown function (DUF1664) 	LOC_Os09g30478.1	expressed protein	Medtr3g106460.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5315.1.A1_at	A	A1TS	POPTR_0002s05220	POPTR_0002s05220 (11)	scaffold_2:3380285-3380442(-) (11)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.5315.1.A1_s_at	A	A1TS	POPTR_0002s05220	POPTR_0002s05220 (11)	scaffold_2:3380315-3381372(-) (11)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.5315.2.A1_at	A	A1MS	POPTR_0005s23280	POPTR_0005s23280 (9)	scaffold_5:22104696-22104808(+) (9)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.53153.1.S1_a_at	A	A1TS	POPTR_0015s15370	POPTR_0015s15370 (11)	scaffold_15:14672790-14674158(+) (11)	NA	P42620	Uncharacterized protein yqjG	AT4G19880.1	Glutathione S-transferase family protein 	LOC_Os02g21460.1	"uncharacterized protein yqjG, putative, expressed"	Medtr4g114540.1	"Intracellular chloride channel; Glutathione S-transferase, C-terminal-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53164.1.S1_s_at	A	A1TS	POPTR_0003s18550	POPTR_0003s18550 (11)	scaffold_3:17595486-17597182(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT1G79640.2	Protein kinase superfamily protein 	LOC_Os02g54900.1	"STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g023360.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5318.1.S1_at	A	A1TS	POPTR_0006s26780	POPTR_0006s26780 (10)	scaffold_6:24879030-24879546(-) (11)	NA	NA	NA	AT5G11280.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g37480.1	expressed protein	Medtr3g136680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53192.1.S1_at	A	A1TS	POPTR_0004s00220	POPTR_0004s00220 (10)	scaffold_4:27900-28308(+) (10)	NA	P29421	Alpha-amylase/subtilisin inhibitor	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.5321.1.A1_at	A	A1TS	POPTR_0009s06980	POPTR_0009s06980 (11)	scaffold_9:6630955-6632001(+) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT3G52140.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g48620.2	"tetratricopeptide repeat, putative, expressed"	Medtr3g030760.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5323.1.S1_at	A	A1TS	POPTR_0009s06770	POPTR_0009s06770 (11)	scaffold_9:6479538-6479626(-) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37980.1	elicitor-activated gene 3-1 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.53240.1.S1_at	A	A1TS	POPTR_0001s14350	POPTR_0001s14350 (11)	scaffold_1:11276341-11278787(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53241.1.A1_at	A	A1TS	POPTR_0017s06850	POPTR_0017s06850 (11)	scaffold_17:5223980-5224789(-) (11)	NA	NA	NA	AT2G32280.1	Protein of unknown function (DUF1218) 	LOC_Os07g36110.2	expressed protein	Medtr2g103410.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53246.1.S1_s_at	A	A1TS	POPTR_0017s04710	POPTR_0017s04710 (11)	scaffold_17:3613870-3614087(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53248.1.S1_at	A	A1TS	POPTR_0008s15810	POPTR_0008s15810 (11)	scaffold_8:10524338-10526396(-) (11)	NA	P40691	Auxin-induced protein PCNT115	AT1G60680.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g28320.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g140850.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.5326.1.A1_at	A	A1TS	POPTR_0003s17980	POPTR_0003s17980 (11)	scaffold_2030:3860-3924(-) (11)//scaffold_3:17214069-17214133(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G15950.1	cinnamoyl coa reductase 1 	LOC_Os08g34280.1	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.53264.3.S1_a_at	A	A1TS	POPTR_0006s08370	POPTR_0006s08370 (11)	scaffold_6:6097676-6099201(-) (11)	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G37520.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g01170.1	"PHD-finger domain containing protein, expressed"	AC233662_51.1	"Zinc finger, FYVE/PHD-type AC233662.1 243724-237189 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53264.4.S1_a_at	A	A1TS	POPTR_0006s08370	POPTR_0006s08370 (10)	scaffold_6:6104772-6105111(-) (10)	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G37520.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g01170.1	"PHD-finger domain containing protein, expressed"	AC233662_51.1	"Zinc finger, FYVE/PHD-type AC233662.1 243724-237189 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53274.1.A1_at	A	A1TS	POPTR_0008s10430	POPTR_0008s10430 (10)	scaffold_8:6529138-6529719(-) (10)	NA	O23470	GDSL esterase/lipase At4g16230	AT2G23540.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g19670.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g137420.1	hypothetical protein 	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.53287.1.A1_at	A	A1TS	POPTR_0009s12650	POPTR_0009s12650 (11)	scaffold_9:10282491-10284664(-) (11)	NA	Q9GZT6	"Coiled-coil domain-containing protein 90B, mitochondrial"	AT2G16460.1	Protein of unknown function (DUF1640) 	LOC_Os06g49890.1	"coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed"	Medtr3g162970.1	Protein of unknown function DUF1640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5329.2.A1_s_at	A	A1TS	POPTR_0016s09330	POPTR_0016s09330 (11)	scaffold_16:7335925-7337320(+) (11)	NA	NA	NA	AT3G09860.1	unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5329.3.S1_at	A	A1TS	POPTR_0016s09330	POPTR_0016s09330 (11)	scaffold_16:7337598-7337707(+) (11)	NA	NA	NA	AT3G09860.1	unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53291.1.S1_at	A	A1TS	POPTR_0009s02570	POPTR_0009s02570 (11)	scaffold_9:3352381-3353852(+) (11)	NA	Q8BZ36	RAD50-interacting protein 1	AT1G08400.1	RINT-1 / TIP-1 family 	LOC_Os07g48720.1	"MAG2, putative, expressed"	Medtr7g065190.1	Lipocalin; RINT-1/TIP-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53295.1.S1_at	A	A1TS	POPTR_0006s28240	POPTR_0006s28240 (10)	scaffold_6:26001615-26002091(-) (10)	NA	NA	NA	AT1G80450.1	VQ motif-containing protein 	LOC_Os01g54400.1	"VQ domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53336.1.A1_at	A	A1TS	POPTR_0016s12700	POPTR_0016s12700 (10)	scaffold_16:12082864-12083390(+) (10)	NA	P33303	Succinate/fumarate mitochondrial transporter	AT5G01340.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18160.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53357.1.S1_s_at	A	A1TS	POPTR_0008s08980	POPTR_0008s08980 (11)	scaffold_8:5566863-5567326(+) (11)	NA	Q6R8G0	Phosphate transporter PHO1 homolog 10	AT1G69480.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.53367.1.S1_at	A	A1TS	POPTR_0013s05030	POPTR_0013s05030 (11)	scaffold_13:3550217-3551861(+) (11)	NA	Q9ATM2	Aquaporin SIP1-2	AT3G04090.1	small and basic intrinsic protein 1A 	LOC_Os01g08660.1	"aquaporin protein, putative, expressed"	Medtr7g099920.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53411.1.A1_s_at	A	A1TS	POPTR_0012s10200	POPTR_0012s10200 (11)	scaffold_12:11028567-11028955(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53417.1.S1_a_at	A	A1TS	POPTR_0010s05510	POPTR_0010s05510 (9)	scaffold_10:6961332-6961644(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5343.1.S1_at	A	A1TS	POPTR_0012s00680	POPTR_0012s00680 (11)	scaffold_12:379206-379886(+) (11)	NA	NA	NA	AT4G27660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54150.1); Has 115 Blast hits to 109 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os10g32850.1	hypothetical protein	Medtr3g122500.1	RIN13 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53433.1.S1_s_at	A	A1TS	POPTR_0009s15130	POPTR_0009s15130 (10)	scaffold_9:11751525-11752927(+) (11)	NA	NA	NA	AT5G22640.1	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5347.1.S1_at	A	A1TS	POPTR_0014s14410	POPTR_0014s14410 (10)	scaffold_14:10569432-10569789(+) (10)	NA	NA	NA	AT5G16490.1	ROP-interactive CRIB motif-containing protein 4 	LOC_Os11g28310.1	"P21-Rho-binding domain containing protein, putative, expressed"	Medtr7g021460.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53470.1.S1_at	A	A1TS	POPTR_0006s01080	POPTR_0006s01080 (11)	scaffold_6:610286-610960(+) (11)	NA	A5PKH3	Fumarylacetoacetase	AT1G12050.1	"fumarylacetoacetase, putative "	LOC_Os02g10310.1	"fumarylacetoacetase, putative, expressed"	Medtr2g029700.1	Fumarylacetoacetase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0009072|aromatic amino acid family metabolic process	GO:0004334|fumarylacetoacetase activity	NA
PtpAffx.53477.1.S1_at	A	A2TS	POPTR_0005s19280	POPTR_0114s00200 (11)//POPTR_0005s19280 (11)	scaffold_114:15442-15805(+) (11)//scaffold_5:17999911-18000274(+) (11)	NA	NA	NA	AT3G49880.1	glycosyl hydrolase family protein 43 	LOC_Os12g21789.2	expressed protein	Medtr5g015550.1	"Proteinase inhibitor I4, serpin; Glycoside hydrolase, family 43 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5349.1.A1_at	A	A1MS	POPTR_0001s00920	POPTR_0001s00920 (10)	scaffold_1:747390-747753(+) (11)	NA	Q06003	Protein goliath	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os05g32350.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g026380.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53522.1.S1_at	A	A1TS	POPTR_0016s00300	POPTR_0016s00300 (11)	scaffold_16:44995-45927(+) (11)	NA	NA	NA	AT4G17150.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g40730.1	"protein with a conserved N-terminal region, putative, expressed"	Medtr2g033450.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53536.1.S1_at	A	A1TS	POPTR_0002s07710	POPTR_0002s07710 (10)	scaffold_2:5286142-5286543(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53545.1.S1_at	A	A1TS	POPTR_0017s08380	POPTR_0017s08380 (11)	scaffold_17:6897296-6899041(+) (11)	NA	Q6IP50	UBX domain-containing protein 1-A	AT1G04850.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os02g30180.1	"ZOS2-07 - C2H2 zinc finger protein, expressed"	Medtr4g133680.1	"Ubiquitin-associated; PUG; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53546.1.A1_at	A	A1TS	POPTR_0005s08390	POPTR_0005s08390 (9)	scaffold_5:5800583-5801564(+) (9)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G58950.1	Protein kinase superfamily protein 	LOC_Os01g10450.2	"protein kinase domain containing protein, expressed"	Medtr2g017390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.53559.1.S1_at	A	A1MS	POPTR_0012s03470	POPTR_0012s03470 (9)	scaffold_12:2739551-2739898(-) (9)	NA	Q9Z2D7	Methyl-CpG-binding domain protein 4	AT3G07930.3	DNA glycosylase superfamily protein 	LOC_Os09g01290.2	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	NA	NA	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
PtpAffx.53560.1.S1_at	A	A1TS	POPTR_0013s10040	POPTR_0013s10040 (11)	scaffold_13:10022616-10023055(+) (11)	NA	Q9CAG8	F-box/kelch-repeat protein At1g67480	AT1G67480.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g30210.2	"OsFBK7 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53562.1.A1_at	A	A1TS	POPTR_0018s09320	POPTR_0018s09320 (10)	scaffold_18:10200150-10201841(+) (10)	NA	Q54Q39	Protein phosphatase 1 regulatory subunit pprA	AT5G19680.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g13640.1	"protein phosphatase 1 regulatory subunit SDS22, putative, expressed"	Medtr4g159610.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.53563.1.S1_s_at	A	A1TS	POPTR_0005s24950	POPTR_0005s24950 (11)	scaffold_5:23347014-23347062(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G75240.1	homeobox protein 33 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g020380.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Zinc finger, C2H2-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53565.2.A1_a_at	A	A1TS	POPTR_0003s13800	POPTR_0003s13800 (11)	scaffold_3:14079239-14079634(+) (11)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53567.1.S1_at	A	A1TS	POPTR_0001s09670	POPTR_0001s09670 (11)	scaffold_1:7381913-7382217(+) (11)	NA	Q38861	DNA repair helicase XPB1	AT5G41370.1	homolog of xeroderma pigmentosum complementation group B 1 	LOC_Os01g49680.1	"DNA repair helicase XPB2, putative, expressed"	NA	NA	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.5358.1.S1_at	A	A1TS	POPTR_0018s06920	POPTR_0018s06920 (11)	scaffold_18:7034561-7034962(+) (11)	NA	NA	NA	AT4G29520.1	"LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139); Has 137 Blast hits to 137 proteins in 50 species: Archae - 2; Bacteria - 0; Metazoa - 41; Fungi - 10; Plants - 36; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). "	LOC_Os06g05740.1	expressed protein	Medtr6g093310.1	Saposin B 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5360.1.S1_at	A	A1TS	POPTR_0001s21460	POPTR_0001s21460 (11)	scaffold_1:19942467-19942915(+) (11)	NA	P49310	Glycine-rich RNA-binding protein GRP1A	AT3G26420.1	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 	LOC_Os03g61990.5	"glycine-rich RNA-binding protein 7, putative, expressed"	Medtr2g008300.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.53600.1.S1_at	A	A1TS	POPTR_0005s04620	POPTR_0005s04620 (10)	scaffold_5:3098500-3100870(+) (10)	NA	NA	NA	AT3G05010.1	"Protein of unknown function, transmembrane-40 "	LOC_Os03g54920.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53614.1.A1_at	A	A1TS	POPTR_0013s06100	POPTR_0013s06100 (11)	scaffold_13:4519254-4519818(+) (11)	NA	NA	NA	AT1G28760.1	Uncharacterized conserved protein (DUF2215) 	LOC_Os03g45180.1	expressed protein	Medtr7g103260.1	"protein F1K23.6 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5364.2.A1_a_at	A	A1TS	POPTR_0003s06750	POPTR_0003s06750 (11)	scaffold_3:8292437-8293243(-) (11)	NA	Q94AU2	25.3 kDa vesicle transport protein	AT1G11890.1	Synaptobrevin family protein 	LOC_Os03g57760.2	"25.3 kDa vesicle transport protein, putative, expressed"	Medtr8g025760.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.53642.1.S1_at	A	A1TS	POPTR_0013s00620	POPTR_0013s00620 (11)	scaffold_13:299230-300337(+) (11)	NA	Q0JP11	Zinc finger CCCH domain-containing protein 3	AT5G26749.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g14870.1	"zinc finger matrin-type protein 5, putative, expressed"	Medtr1g102850.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.5366.1.A1_a_at	A	A2TS	POPTR_0004s16030	POPTR_0004s16030 (11)//POPTR_0009s11690 (11)	scaffold_4:16491832-16493460(-) (11)//scaffold_9:9670462-9672070(-) (11)	NA	Q9SAA2	"ATP-dependent Clp protease proteolytic subunit 6, chloroplastic"	AT1G11750.1	CLP protease proteolytic subunit 6 	LOC_Os03g29810.1	"OsClp6 - Putative Clp protease homologue, expressed"	Medtr4g095340.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.5366.1.A1_at	A	A1TS	POPTR_0004s16030	POPTR_0004s16030 (11)	scaffold_4:16491238-16493607(-) (11)	NA	Q9SAA2	"ATP-dependent Clp protease proteolytic subunit 6, chloroplastic"	AT1G11750.1	CLP protease proteolytic subunit 6 	LOC_Os03g29810.1	"OsClp6 - Putative Clp protease homologue, expressed"	Medtr4g095340.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.5366.3.S1_at	A	A1MS	POPTR_0009s11690	POPTR_0009s11690 (9)	scaffold_9:9672139-9672980(-) (11)	NA	Q9SAA2	"ATP-dependent Clp protease proteolytic subunit 6, chloroplastic"	AT1G11750.2	CLP protease proteolytic subunit 6 	LOC_Os03g29810.1	"OsClp6 - Putative Clp protease homologue, expressed"	Medtr4g095340.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.53672.2.S1_at	A	A1TS	POPTR_0003s16070	POPTR_0003s16070 (11)	scaffold_3:15676535-15676779(-) (11)	NA	O23627	"Glycyl-tRNA synthetase 1, mitochondrial"	AT1G29880.1	glycyl-tRNA synthetase / glycine--tRNA ligase 	LOC_Os08g42560.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr3g137760.1	"Glycyl-tRNA synthetase 1, mitochondrial precursor, putative "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.53694.1.S1_at	A	A1TS	POPTR_0014s01410	POPTR_0014s01410 (11)	scaffold_14:1369424-1369794(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5370.1.S1_at	A	A1TS	POPTR_0001s33700	POPTR_0001s33700 (11)	scaffold_1:31889249-31890524(+) (11)	NA	P38385	Protein transport protein Sec61 subunit gamma	AT5G50460.1	secE/sec61-gamma protein transport protein 	LOC_Os06g44374.1	"protein transport protein SEC61 subunit gamma, putative, expressed"	Medtr5g091490.1	Protein secE/sec61-gamma protein 	GO:0006605|protein targeting	NA	GO:0016020|membrane
PtpAffx.53700.1.S1_at	A	A1TS	POPTR_0011s13870	POPTR_0011s13870 (11)	scaffold_11:16490163-16490592(+) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT3G20570.1	early nodulin-like protein 9 	LOC_Os01g57880.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g110820.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.53701.1.S1_at	A	A1TS	POPTR_0002s10300	POPTR_0002s10300 (9)	scaffold_2:7389912-7391089(+) (9)	NA	Q6QRN6	Apolipoprotein A-I-binding protein	AT5G49970.1	pyridoxin (pyrodoxamine) 5'-phosphate oxidase 	LOC_Os10g23120.1	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	Medtr3g148810.1	"YjeF-related protein, N-terminal; Pyridoxamine 5-phosphate oxidase, FMN-binding "	GO:0055114|oxidation reduction	"GO:0016638|""oxidoreductase activity, acting on the CH-NH2 group of donors""||GO:0010181|FMN binding"	NA
PtpAffx.53710.1.S1_at	A	A1TS	POPTR_0006s25840	POPTR_0006s25840 (11)	scaffold_6:24190018-24190522(-) (11)	NA	Q9S7G7	Myb-related protein 3R-1	AT4G32730.2	Homeodomain-like protein 	LOC_Os01g12860.1	"MYB family transcription factor, putative, expressed"	AC225518_14.1	Homeodomain-like; AC225518.12 45180-39703 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53711.1.S1_at	A	A1TS	POPTR_0001s40440	POPTR_0001s40440 (11)	scaffold_1:39882316-39883631(-) (11)	NA	Q5E9N0	Bystin	AT1G31660.1	CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). 	LOC_Os09g18320.1	"bystin, putative, expressed"	Medtr5g026110.1	Bystin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53720.1.S1_at	A	A1TS	POPTR_0017s02810	POPTR_0017s02810 (11)	scaffold_17:2012628-2013432(+) (11)	NA	Q9FHQ3	"15.7 kDa heat shock protein, peroxisomal"	AT5G37670.1	HSP20-like chaperones superfamily protein 	LOC_Os06g14240.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr5g085810.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53727.1.S1_s_at	A	A1TS	POPTR_0001s44470	POPTR_0001s44470 (11)	scaffold_1:44880491-44881816(-) (11)	NA	B3QLP5	Tetraacyldisaccharide 4'-kinase	AT3G20480.1	tetraacyldisaccharide 4'-kinase family protein 	LOC_Os07g01200.1	"tetraacyldisaccharide 4-kinase, putative, expressed"	Medtr3g069100.1	Tetraacyldisaccharide-1-P 4-kinase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0009245|lipid A biosynthetic process	GO:0009029|tetraacyldisaccharide 4'-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.53729.1.A1_at	A	A1TS	POPTR_0001s12700	POPTR_0001s12700 (11)	scaffold_1:9840917-9841354(-) (11)	NA	P55861	DNA replication licensing factor mcm2	AT1G44900.1	minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os11g29380.1	"MCM2 - Putative minichromosome maintenance MCM complex subunit 2, expressed"	Medtr8g137330.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0016887|ATPase activity	NA
PtpAffx.5375.1.A1_at	A	A1TS	POPTR_0006s25430	POPTR_0006s25430 (11)	scaffold_6:23826862-23827792(-) (11)	NA	Q3ZBL5	"Peptidyl-tRNA hydrolase 2, mitochondrial"	AT4G32900.2	Peptidyl-tRNA hydrolase II (PTH2) family protein 	LOC_Os05g44390.1	"peptidyl-tRNA hydrolase, putative, expressed"	Medtr3g130520.1	Protein of unknown function UPF0099 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004045|aminoacyl-tRNA hydrolase activity	NA
PtpAffx.53772.1.S1_s_at	A	A1TS	POPTR_0001s16820	POPTR_0001s16820 (11)	scaffold_1:13624139-13626371(-) (11)	NA	Q9CRT8	Exportin-T	AT1G72560.3	ARM repeat superfamily protein 	LOC_Os07g42180.1	"exportin 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53792.1.S1_at	A	A1MS	POPTR_0010s00760	POPTR_0010s00760 (9)	scaffold_10:470465-471360(-) (10)	NA	Q15061	WD repeat-containing protein 43	AT5G11240.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g18840.1	"NUC189 domain containing protein, expressed"	Medtr8g138450.1	"Protein of unknown function NUC189, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.538.1.S1_at	A	A1TS	POPTR_0006s27050	POPTR_0006s27050 (11)	scaffold_6:25067708-25068194(-) (11)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os06g40450.3	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5383.1.S1_at	A	A1TS	POPTR_0008s10720	POPTR_0008s10720 (11)	scaffold_8:6727234-6727790(+) (11)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g23620.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.5384.1.S1_at	A	A1TS	POPTR_0018s01370	POPTR_0018s01370 (10)	scaffold_18:1328550-1331781(+) (10)	NA	P48502	Cytochrome b-c1 complex subunit 7	AT5G25450.1	"Cytochrome bd ubiquinol oxidase, 14kDa subunit "	LOC_Os03g59220.1	"cytochrome b-c1 complex subunit 7, putative, expressed"	Medtr1g013430.1	"Cytochrome bd ubiquinol oxidase, 14 kDa subunit "	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
PtpAffx.5384.2.A1_s_at	A	A1TS	POPTR_0006s26610	POPTR_0006s26610 (10)	scaffold_6:24777693-24779871(+) (10)	NA	P48502	Cytochrome b-c1 complex subunit 7	AT5G25450.1	"Cytochrome bd ubiquinol oxidase, 14kDa subunit "	LOC_Os03g59220.1	"cytochrome b-c1 complex subunit 7, putative, expressed"	Medtr1g013430.1	"Cytochrome bd ubiquinol oxidase, 14 kDa subunit "	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
PtpAffx.5384.2.A1_x_at	A	A1TS	POPTR_0006s26610	POPTR_0006s26610 (11)	scaffold_6:24776955-24779865(+) (11)	NA	P48502	Cytochrome b-c1 complex subunit 7	AT5G25450.1	"Cytochrome bd ubiquinol oxidase, 14kDa subunit "	LOC_Os03g59220.1	"cytochrome b-c1 complex subunit 7, putative, expressed"	Medtr1g013430.1	"Cytochrome bd ubiquinol oxidase, 14 kDa subunit "	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
PtpAffx.5384.4.A1_at	A	A1TS	POPTR_0016s14080	POPTR_0016s14080 (9)	scaffold_16:13322045-13322601(+) (9)	NA	NA	NA	AT2G38370.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr3g097420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53853.1.A1_at	A	A1TS	POPTR_0018s03430	POPTR_0018s03430 (11)	scaffold_18:3012771-3013173(+) (11)	NA	Q9SJA7	Probable sarcosine oxidase	AT2G24580.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g32290.2	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr3g133200.1	NAD-binding site 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.5388.1.A1_at	A	A1TA	POPTR_0006s10860	POPTR_0006s10860 (10)	scaffold_6:8241391-8241455(-) (10)	NA	Q42589	Non-specific lipid-transfer protein 1	AT2G38540.1	lipid transfer protein 1 	LOC_Os11g02369.1	"LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5388.2.A1_at	A	A1TS	POPTR_0006s10860	POPTR_0006s10860 (11)	scaffold_6:8241551-8242175(+) (11)	NA	Q42589	Non-specific lipid-transfer protein 1	AT2G38540.1	lipid transfer protein 1 	LOC_Os11g02369.1	"LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5388.2.A1_s_at	A	A1TS	POPTR_0006s10860	POPTR_0006s10860 (11)	scaffold_6:8241434-8242257(+) (11)	NA	Q42589	Non-specific lipid-transfer protein 1	AT2G38540.1	lipid transfer protein 1 	LOC_Os11g02369.1	"LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53903.1.S1_s_at	A	A1TS	POPTR_0018s02430	POPTR_0018s02430 (11)	scaffold_18:2198453-2198851(-) (11)	NA	Q8C092	Transcription initiation factor TFIID subunit 5	AT5G25150.1	TBP-associated factor 5 	LOC_Os06g44030.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.53904.1.S1_at	A	A1TS	POPTR_0006s11370	POPTR_0006s11370 (9)	scaffold_6:8611538-8611675(+) (9)	NA	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53925.1.S1_at	A	A1TS	POPTR_0010s18770	POPTR_0010s18770 (11)	scaffold_10:16908949-16909266(+) (11)	NA	Q2T9S4	Phosphoglycolate phosphatase	AT5G36700.4	2-phosphoglycolate phosphatase 1 	LOC_Os04g41340.1	"4-nitrophenylphosphatase, putative, expressed"	Medtr7g090150.2	"HAD-superfamily hydrolase, subfamily IIA "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.53925.2.S1_at	A	A1TS	POPTR_0008s07710	POPTR_0008s07710 (11)	scaffold_8:4723953-4724041(-) (11)	NA	Q2T9S4	Phosphoglycolate phosphatase	AT5G36700.4	2-phosphoglycolate phosphatase 1 	LOC_Os04g41340.1	"4-nitrophenylphosphatase, putative, expressed"	Medtr7g090150.2	"HAD-superfamily hydrolase, subfamily IIA "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.53926.1.S1_at	A	A1TS	POPTR_0013s14930	POPTR_0013s14930 (11)	scaffold_13:15014176-15014567(+) (11)	NA	NA	NA	AT2G30230.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g18660.1	expressed protein	Medtr3g033710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5394.1.A1_a_at	A	A2TS	POPTR_0006s06560	POPTR_0006s06560 (11)//POPTR_0018s12800 (11)	scaffold_18:13317791-13318026(+) (11)//scaffold_6:4752827-4753062(+) (11)	NA	Q02527	"Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase"	AT2G13290.2	"beta-1,4-N-acetylglucosaminyltransferase family protein "	LOC_Os12g41780.2	"glycosyl transferase family 17 protein, putative, expressed"	Medtr8g121170.1	"Glycosyl transferase, family 17 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003830|""beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity"""	GO:0016020|membrane
PtpAffx.5394.1.A1_at	A	A1TS	POPTR_0018s12800	POPTR_0018s12800 (11)	scaffold_18:13317684-13318206(+) (11)	NA	Q02527	"Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase"	AT2G13290.2	"beta-1,4-N-acetylglucosaminyltransferase family protein "	LOC_Os12g41780.2	"glycosyl transferase family 17 protein, putative, expressed"	Medtr8g121170.1	"Glycosyl transferase, family 17 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003830|""beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity"""	GO:0016020|membrane
PtpAffx.5394.2.A1_at	A	A1TS	POPTR_0006s06560	POPTR_0006s06560 (10)	scaffold_6:4752806-4753218(+) (10)	NA	Q02527	"Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase"	AT2G13290.2	"beta-1,4-N-acetylglucosaminyltransferase family protein "	LOC_Os12g41780.2	"glycosyl transferase family 17 protein, putative, expressed"	Medtr8g121170.1	"Glycosyl transferase, family 17 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003830|""beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity"""	GO:0016020|membrane
PtpAffx.53941.1.A1_at	A	A1TS	POPTR_0012s09780	POPTR_0012s09780 (11)	scaffold_12:10717002-10717816(+) (11)	NA	P54122	Ribonuclease J	AT5G63420.1	RNA-metabolising metallo-beta-lactamase family protein 	LOC_Os02g33610.1	"metallo-beta-lactamase, putative, expressed"	Medtr3g117450.1	"Myb, DNA-binding; Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53949.1.S1_at	A	A1TS	POPTR_0005s23250	POPTR_0005s23250 (11)	scaffold_5:22075555-22077243(-) (11)	NA	Q4P4G8	UPF0396 protein UM04995	AT4G02720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g28220.1	"NFKB, putative, expressed"	AC235567_24.1	Protein of unknown function DUF926 AC235567.1 81779-83332 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53957.1.S1_at	A	A1TS	POPTR_0002s14950	POPTR_0002s14950 (10)	scaffold_2:11064819-11067385(-) (10)	POPTR_0014s06550 (6)	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os02g03270.1	"AT hook motif domain containing protein, expressed"	Medtr8g106590.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53957.2.A1_a_at	A	A2TS	POPTR_0002s14950	POPTR_0014s06550 (11)//POPTR_0002s14950 (11)	scaffold_14:4974532-4974787(-) (11)//scaffold_2:11068871-11069126(-) (11)	NA	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os02g03270.1	"AT hook motif domain containing protein, expressed"	Medtr8g106590.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53957.2.A1_at	A	A1TS	POPTR_0014s06550	POPTR_0014s06550 (11)	scaffold_14:4974548-4975352(-) (11)	NA	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os08g02490.1	"AT hook motif domain containing protein, expressed"	Medtr8g106590.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53960.1.A1_at	A	A1TS	POPTR_0002s11130	POPTR_0002s11130 (9)	scaffold_2:8174604-8174994(+) (9)	NA	NA	NA	AT1G58250.1	Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain 	LOC_Os03g23030.1	"aberrant pollen transmission 1, putative, expressed"	Medtr5g075570.1	"SAB, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54021.1.S1_at	A	A1TS	POPTR_0019s15350	POPTR_0019s15350 (10)	scaffold_19:15879360-15880009(-) (10)	NA	B4PS83	Cohesin loading complex subunit SCC4 homolog	AT5G51340.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g28010.1	expressed protein	Medtr5g083820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54052.1.S1_at	A	A1TS	POPTR_0003s06640	POPTR_0003s06640 (10)	scaffold_3:8158394-8159370(+) (10)	NA	Q28EW0	Transmembrane protein 87A	AT1G72480.1	Lung seven transmembrane receptor family protein 	LOC_Os09g26830.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr2g007860.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.5406.1.A1_a_at	A	A1TS	POPTR_0009s09920	POPTR_0009s09920 (11)	scaffold_9:8674558-8675334(-) (11)	NA	NA	NA	AT2G15290.1	translocon at inner membrane of chloroplasts 21 	LOC_Os06g43130.1	"tic21, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54062.1.S1_s_at	A	A2TS	POPTR_0004s07090	POPTR_0017s01000 (11)//POPTR_0004s07090 (11)	scaffold_17:742779-743095(+) (11)//scaffold_4:5891473-5891771(+) (11)	NA	Q0WMN5	Uncharacterized protein At3g49135	AT5G24060.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g34130.1	expressed protein	Medtr6g062650.1	"binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54064.1.S1_s_at	A	A1TS	POPTR_0010s11630	POPTR_0010s11630 (11)	scaffold_10:11817946-11818732(-) (11)	NA	Q8LF21	Dynamin-related protein 1C	AT1G14830.1	DYNAMIN-like 1C 	LOC_Os03g50520.1	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.54077.1.S1_at	A	A1TS	POPTR_0003s11770	POPTR_0003s11770 (10)	scaffold_3:12545321-12547319(+) (10)	NA	NA	NA	AT4G22860.1	Cell cycle regulated microtubule associated protein 	LOC_Os06g03980.1	expressed protein	Medtr5g011520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5408.1.A1_a_at	A	A1TS	POPTR_0004s09340	POPTR_0004s09340 (11)	scaffold_4:7889922-7890293(-) (11)	NA	NA	NA	AT1G60640.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os01g32130.1	expressed protein	Medtr7g094070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5408.2.A1_at	A	A1TS	POPTR_0005s15000	POPTR_0005s15000 (11)	scaffold_5:11834688-11835301(-) (11)	NA	NA	NA	AT1G60640.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g32130.1	expressed protein	Medtr7g094070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54081.1.A1_at	A	A1TS	POPTR_0018s01260	POPTR_0018s01260 (10)	scaffold_18:1235271-1235635(+) (10)	NA	Q91V37	V-type proton ATPase 21 kDa proteolipid subunit	AT2G25610.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os01g42430.1	"vacuolar ATP synthase, putative, expressed"	Medtr7g107360.1	"H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.5409.1.A1_at	A	A1TS	POPTR_0010s12080	POPTR_0010s12080 (11)	scaffold_10:12172075-12172228(+) (11)	NA	Q6EI05	DELLA protein GAIP-B	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5409.2.S1_at	A	A1TS	POPTR_0008s13090	POPTR_0008s13090 (10)	scaffold_8:8534969-8535333(-) (10)	NA	Q6EI05	DELLA protein GAIP-B	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54090.1.S1_at	A	A1TS	POPTR_0001s23680	POPTR_0001s23680 (10)	scaffold_1:23074110-23074878(+) (10)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr2g071640.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.541.1.A1_at	A	A1TS	POPTR_0003s02610	POPTR_0003s02610 (10)	scaffold_3:2697309-2697687(-) (10)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os03g52310.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.54125.1.A1_s_at	A	A1TS	POPTR_0002s02690	POPTR_0002s02690 (9)	scaffold_2:1602094-1602510(-) (10)//scaffold_2:1610132-1610551(-) (9)//scaffold_2:1680072-1680488(-) (9)	POPTR_0002s02770 (6)//POPTR_0002s02700 (6)	O65782	Cytochrome P450 83B1	AT4G31500.1	"cytochrome P450, family 83, subfamily B, polypeptide 1 "	LOC_Os12g16720.1	"cytochrome P450 71A1, putative, expressed"	Medtr5g081180.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.54126.1.S1_s_at	A	A1TS	POPTR_0003s16490	POPTR_0003s16490 (11)	scaffold_3:16085692-16086130(-) (11)	NA	Q53NF7	NAC domain-containing protein 71	AT5G13180.1	NAC domain containing protein 83 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.5413.1.S1_a_at	A	A1TS	POPTR_0012s10175	POPTR_0012s10175 (11)	scaffold_12:11001653-11001908(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54135.1.S1_a_at	A	A1TS	POPTR_0003s03000	POPTR_0003s03000 (11)	scaffold_3:3257369-3258579(+) (11)	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.2	calcineurin B-like protein 10 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr1g020570.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5416.1.A1_at	A	A1TS	POPTR_0014s10280	POPTR_0014s10280 (11)	scaffold_14:7702441-7703288(+) (11)	NA	Q43187	Soluble inorganic pyrophosphatase	AT1G01050.1	pyrophosphorylase 1 	LOC_Os04g59040.1	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr7g146210.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
PtpAffx.54163.1.S1_a_at	A	A2TS	POPTR_0008s03920	POPTR_0010s22970 (11)//POPTR_0008s03920 (11)	scaffold_10:19673224-19674030(+) (11)//scaffold_8:2155146-2155948(-) (11)	NA	NA	NA	AT2G39000.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g56219.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr1g120860.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.54163.1.S1_at	A	A1TS	POPTR_0008s03920	POPTR_0008s03920 (11)	scaffold_8:2155070-2156024(-) (11)	NA	NA	NA	AT2G39000.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g56219.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr1g120860.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.54163.2.A1_at	A	A1TS	POPTR_0010s22970	POPTR_0010s22970 (11)	scaffold_10:19673770-19674190(+) (11)	NA	NA	NA	AT2G39000.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g56219.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr1g120860.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.54182.1.A1_at	A	A1TS	POPTR_0002s26400	POPTR_0002s26400 (11)	scaffold_2:23368367-23372933(-) (11)	NA	Q8L5U0	COP9 signalosome complex subunit 4	AT5G42970.1	Proteasome component (PCI) domain protein 	LOC_Os03g10120.2	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54186.1.S1_at	A	A1TS	POPTR_0008s20220	POPTR_0008s20220 (11)	scaffold_8:14002682-14003787(-) (11)	NA	Q9ZNV9	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os05g44570.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g025860.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.54186.2.S1_s_at	A	A1TS	POPTR_0010s02780	POPTR_0010s02780 (10)	scaffold_10:3282329-3283052(-) (10)	NA	Q9ZNV9	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os05g44570.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g025860.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.5420.1.A1_at	A	A1TS	POPTR_0007s15320	POPTR_0007s15320 (10)	scaffold_7:14892831-14893755(-) (10)	NA	Q8LDF9	High mobility group B protein 7	AT5G23420.1	high-mobility group box 6 	LOC_Os08g01100.1	"HMG1/2, putative, expressed"	Medtr8g021080.1	High mobility group box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.54214.1.S1_at	A	A1TS	POPTR_0008s10570	POPTR_0008s10570 (11)	scaffold_8:6619974-6621450(+) (11)	NA	NA	NA	AT3G06660.1	PAPA-1-like family protein / zinc finger (HIT type) family protein 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5423.1.S1_s_at	A	A1TS	POPTR_0003s12030	POPTR_0003s12030 (11)	scaffold_3:12704073-12704418(-) (11)	NA	P54873	Hydroxymethylglutaryl-CoA synthase	AT4G11820.2	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase 	LOC_Os08g43170.1	"hydroxymethylglutaryl-CoA synthase, putative, expressed"	Medtr5g011170.1	"Hydroxymethylglutaryl-coenzyme A synthase, active site; "	GO:0008299|isoprenoid biosynthetic process	GO:0004421|hydroxymethylglutaryl-CoA synthase activity	NA
PtpAffx.5423.2.A1_a_at	A	A1TS	POPTR_0006s25170	POPTR_0006s25170 (11)	scaffold_6:23591348-23591621(-) (11)	NA	Q94AA4	6-phosphofructokinase 3	AT4G26270.1	phosphofructokinase 3 	LOC_Os01g09570.1	"6-phosphofructokinase, putative, expressed"	Medtr3g128190.1	Phosphofructokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5423.3.S1_at	A	A1TS	POPTR_0001s08600	POPTR_0001s08600 (11)	scaffold_1:6545261-6545663(-) (11)	NA	P54873	Hydroxymethylglutaryl-CoA synthase	AT4G11820.2	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase 	LOC_Os08g43170.1	"hydroxymethylglutaryl-CoA synthase, putative, expressed"	Medtr5g011170.1	"Hydroxymethylglutaryl-coenzyme A synthase, active site; "	GO:0008299|isoprenoid biosynthetic process	GO:0004421|hydroxymethylglutaryl-CoA synthase activity	NA
PtpAffx.5423.4.S1_at	A	A1TS	POPTR_0019s05840	POPTR_0019s05840 (11)	scaffold_19:6264152-6265819(-) (11)	POPTR_0013s07570 (7)	NA	NA	AT5G16660.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os12g39370.3	expressed protein	Medtr5g007350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54248.1.S1_at	A	A1TS	POPTR_0003s08590	POPTR_0003s08590 (11)	scaffold_3:9984293-9985670(+) (11)	NA	Q94EJ6	Probable methyltransferase PMT14	AT4G18030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.54256.1.A1_at	A	A1TS	POPTR_0014s02420	POPTR_0014s02420 (11)	scaffold_14:2027355-2027498(+) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.54256.2.A1_s_at	A	A1TS	POPTR_0014s02420	POPTR_0014s02420 (11)	scaffold_14:2026898-2027244(+) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.54265.1.S1_s_at	A	A1TS	POPTR_0004s14830	POPTR_0004s14830 (11)	scaffold_4:15491121-15492423(+) (11)	NA	Q9LJK3	LAG1 longevity assurance homolog 2	AT3G19260.1	LAG1 homologue 2 	LOC_Os03g15750.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.5430.1.S1_at	A	A1TS	POPTR_0005s25660	POPTR_0005s25660 (11)	scaffold_5:23875461-23876997(-) (11)	NA	Q43434	V-type proton ATPase 16 kDa proteolipid subunit	AT1G19910.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os11g06890.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.5430.1.S1_x_at	A	A1TS	POPTR_0005s25660	POPTR_0005s25660 (11)	scaffold_5:23875461-23877125(-) (11)	NA	Q43434	V-type proton ATPase 16 kDa proteolipid subunit	AT1G19910.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os11g06890.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.5430.2.S1_at	A	A1TS	POPTR_0002s08670	POPTR_0002s08670 (11)	scaffold_2:6081039-6081762(-) (11)	NA	NA	NA	AT4G08240.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g35890.1	expressed protein	Medtr5g065230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5430.3.S1_a_at	A	A1TS	POPTR_0002s02870	POPTR_0002s02870 (11)	scaffold_2:1764870-1766552(+) (11)	NA	P59228	V-type proton ATPase 16 kDa proteolipid subunit c2	AT1G19910.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os02g34510.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.5430.4.S1_a_at	A	A1TS	POPTR_0002s02870	POPTR_0002s02870 (11)	scaffold_2:1766749-1767055(+) (11)	NA	P59228	V-type proton ATPase 16 kDa proteolipid subunit c2	AT1G19910.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os02g34510.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.5430.5.S1_at	A	A1TS	POPTR_0002s00860	POPTR_0002s00860 (9)	scaffold_2:399125-399400(+) (9)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT5G24318.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os01g53750.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g160090.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.54308.1.S1_s_at	A	A1TS	POPTR_0016s01660	POPTR_0016s01660 (11)	scaffold_16:754646-755120(-) (11)	NA	NA	NA	AT1G12060.1	BCL-2-associated athanogene 5 	LOC_Os02g48780.1	"IQ calmodulin-binding and BAG domain containing protein, putative, expressed"	Medtr2g029720.1	"IQ calmodulin-binding region; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.54313.1.S1_at	A	A1TS	POPTR_0011s16200	POPTR_0011s16200 (9)	scaffold_11:18125588-18126066(+) (9)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.5433.1.A1_at	A	A1TS	POPTR_0006s03020	POPTR_0006s03020 (10)	scaffold_6:1899723-1900286(-) (10)	NA	Q9Z8L2	4-alpha-glucanotransferase	AT2G40840.1	disproportionating enzyme 2 	LOC_Os07g46790.1	"4-alpha-glucanotransferase, putative, expressed"	Medtr7g105640.1	"Glycoside hydrolase, family 77 "	GO:0005975|carbohydrate metabolic process	GO:0004134|4-alpha-glucanotransferase activity	NA
PtpAffx.5435.2.S1_a_at	A	A2TS	POPTR_0005s07750	POPTR_0005s07750 (11)//POPTR_0007s05500 (11)	scaffold_5:5306022-5306996(-) (11)//scaffold_7:3585016-3585932(-) (11)	NA	NA	NA	AT4G39860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os02g36500.1	expressed protein	Medtr3g101680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5435.2.S1_at	A	A1TS	POPTR_0007s05500	POPTR_0007s05500 (11)	scaffold_7:3584714-3585907(-) (11)	NA	NA	NA	AT4G39860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os02g36500.1	expressed protein	Medtr3g101680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54366.1.A1_at	A	A1MS	POPTR_0006s28010	POPTR_0006s28010 (9)	scaffold_6:25870426-25870991(-) (9)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT4G31820.1	Phototropic-responsive NPH3 family protein 	LOC_Os09g25330.1	"BTBN19 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr1g016830.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.5437.1.A1_s_at	A	A1TS	POPTR_0015s14570	POPTR_0015s14570 (11)	scaffold_15:14106494-14106731(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54382.1.A1_at	A	A1TS	POPTR_0001s02990	POPTR_0001s02990 (9)	scaffold_1:2368851-2369381(-) (11)	NA	Q1RMH9	DnaJ homolog subfamily C member 2	AT5G45420.1	Duplicated homeodomain-like superfamily protein 	LOC_Os08g06240.1	"MYB family transcription factor, putative, expressed"	Medtr4g142280.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54386.1.A1_s_at	A	A1TS	POPTR_0001s14500	POPTR_0001s14500 (11)	scaffold_1:11374848-11375822(-) (11)	NA	NA	NA	AT3G24160.1	putative type 1 membrane protein 	LOC_Os08g45220.1	expressed protein	Medtr2g130050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54389.2.S1_a_at	A	A1TS	POPTR_0014s14920	POPTR_0014s14920 (10)	scaffold_14:10987190-10991669(-) (10)	NA	Q9VF08	Mitochondrial import inner membrane translocase subunit Tim16	AT3G59280.1	"Protein Transporter, Pam16 "	LOC_Os10g33910.1	"mitochondrial import inner membrane translocase subunit Tim16, putative, expressed"	Medtr1g124900.1	Protein of unknown function UPF0108 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54398.1.S1_s_at	A	A1TS	POPTR_0009s12110	POPTR_0009s12110 (11)	scaffold_9:9933627-9934694(-) (11)	NA	O48671	Protein RER1B	AT2G21600.1	endoplasmatic reticulum retrieval protein 1B 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
PtpAffx.54404.1.S1_s_at	A	A1TS	POPTR_0015s10960	POPTR_0015s10960 (11)	scaffold_15:11695700-11695877(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g150640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54408.1.S1_at	A	A1MS	POPTR_0008s05180	POPTR_0008s05180 (9)	scaffold_8:3003598-3003930(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54413.2.A1_at	A	A1TS	POPTR_0009s10680	POPTR_0009s10680 (11)	scaffold_9:9128955-9129415(-) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT2G03550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.54416.1.S1_at	A	A3TS	POPTR_0013s15310	POPTR_0013s15310 (10)//POPTR_1061s00200 (9)//POPTR_0013s15320 (9)	scaffold_1061:4718-5089(-) (9)//scaffold_13:15315161-15315590(+) (10)//scaffold_13:15340060-15340431(+) (9)	NA	O81346	Tryptophan N-hydroxylase 1	AT4G39950.1	"cytochrome P450, family 79, subfamily B, polypeptide 2 "	LOC_Os04g08828.1	"cytochrome P450, putative, expressed"	Medtr8g088320.1	Cecropin; Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.54422.1.A1_at	A	A1TS	POPTR_0010s14720	POPTR_0010s14720 (11)	scaffold_10:14230758-14231146(-) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT2G03890.1	phosphoinositide 4-kinase gamma 7 	LOC_Os06g17290.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr8g077330.1	"Phosphatidylinositol 3- and 4-kinase, catalytic "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.54429.1.S1_at	A	A1TS	POPTR_0010s06470	POPTR_0010s06470 (11)	scaffold_10:7831369-7831685(+) (11)	NA	Q9LU91	F-box protein SKIP14	AT3G26000.1	Ribonuclease inhibitor 	LOC_Os04g40910.1	"OsFBX146 - F-box domain containing protein, expressed"	Medtr4g157480.1	"4Fe-4S ferredoxin, iron-sulfur binding; Cyclin-like F-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54435.1.S1_at	A	A1TS	POPTR_0002s01760	POPTR_0002s01760 (9)	scaffold_2:939228-943355(-) (11)	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16980.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54445.1.A1_at	A	A1TS	POPTR_0002s17350	POPTR_0002s17350 (11)	scaffold_2:13129182-13129631(+) (11)	NA	Q9ZPY6	Auxin response factor 11	AT2G46530.3	auxin response factor 11 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr4g019570.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.54445.1.A1_s_at	A	A1TS	POPTR_0014s09560	POPTR_0014s09560 (11)	scaffold_14:7133309-7133438(+) (11)	NA	Q9C5W9	Auxin response factor 18	AT3G61830.1	auxin response factor 18 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr4g019570.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.54448.1.A1_at	A	A1TS	POPTR_0012s12780	POPTR_0012s12780 (11)	scaffold_12:13197370-13197876(+) (11)	NA	Q822W4	N-(5'-phosphoribosyl)anthranilate isomerase	AT1G07780.5	phosphoribosylanthranilate isomerase 1 	LOC_Os02g16630.1	"tryptophan biosynthesis protein trpCF, putative, expressed"	Medtr3g094050.1	N-(5phosphoribosyl)anthranilate isomerase (PRAI) 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006568|tryptophan metabolic process	GO:0004640|phosphoribosylanthranilate isomerase activity	NA
PtpAffx.54452.1.S1_s_at	A	A1TS	POPTR_0003s12430	POPTR_0003s12430 (11)	scaffold_3:13005743-13006513(-) (11)	NA	Q9JZ44	30S ribosomal protein S1	AT1G12800.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os02g02390.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g104300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.54457.1.S1_at	A	A2TS	POPTR_0004s13090	POPTR_0004s13090 (11)//POPTR_0023s00630 (11)	scaffold_23:460772-461169(+) (11)//scaffold_4:12508919-12509316(-) (11)	NA	Q9FKA5	Uncharacterized protein At5g39570	AT5G39570.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g12580.1	"pro-resilin precursor, putative, expressed"	Medtr6g013300.1	"Stress protein DDR48, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54459.1.S1_at	A	A1TS	POPTR_0005s05810	POPTR_0005s05810 (10)	scaffold_5:3802504-3803056(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54461.1.A1_at	A	A1TS	POPTR_0008s11090	POPTR_0008s11090 (11)	scaffold_8:6999024-6999509(-) (11)	NA	P87242	HD domain-containing protein C4G3.17	AT1G26160.1	Metal-dependent phosphohydrolase 	LOC_Os01g45390.2	"HD domain containing protein 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54479.1.A1_at	A	A1TS	POPTR_0016s12320	POPTR_0016s12320 (11)	scaffold_16:11659065-11662377(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5448.1.S1_at	A	A1TS	POPTR_0001s24700	POPTR_0001s24700 (11)	scaffold_1:23943556-23944080(-) (11)	NA	Q9LJ98	Probable prefoldin subunit 2	AT3G22480.1	prefoldin 2 	LOC_Os12g30060.2	"prefoldin subunit, putative, expressed"	Medtr3g008490.1	Prefoldin beta-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.5448.2.S1_s_at	A	A1TS	POPTR_0008s15380	POPTR_0008s15380 (11)	scaffold_8:10243354-10243786(+) (11)	NA	Q9LJ98	Probable prefoldin subunit 2	AT3G22480.1	prefoldin 2 	LOC_Os12g30060.2	"prefoldin subunit, putative, expressed"	Medtr3g008490.1	Prefoldin beta-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.54493.1.S1_at	A	A1TS	POPTR_0003s04460	POPTR_0003s04460 (9)	scaffold_3:5182774-5183589(+) (9)	NA	O74545	Putative hydrolase C777.06c	AT3G13800.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os09g19920.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr8g018880.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54519.1.A1_at	A	A1TS	POPTR_0010s06900	POPTR_0010s06900 (11)	scaffold_10:8137098-8137572(-) (11)	NA	Q8BTS4	Nuclear pore complex protein Nup54	AT1G24310.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink). 	LOC_Os07g19494.1	expressed protein	Medtr3g103580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5452.1.S1_a_at	A	A2TS	POPTR_0009s07560	POPTR_0009s07560 (11)//POPTR_0009s07570 (11)	scaffold_9:7043215-7043561(+) (11)//scaffold_9:7049389-7049735(+) (11)	NA	Q9M0E0	40S ribosomal protein S15a-5	AT4G29430.1	ribosomal protein S15A E 	LOC_Os02g15610.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.5452.3.A1_at	A	A2TA	POPTR_0009s07570	POPTR_0009s07570 (11)//POPTR_0009s07560 (9)	scaffold_9:7043315-7049815(-) (11)//scaffold_9:7049489-7049730(-) (9)	NA	Q9M0E0	40S ribosomal protein S15a-5	AT4G29430.1	ribosomal protein S15A E 	LOC_Os02g15610.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.54521.1.S1_at	A	A1MS	POPTR_0017s08840	POPTR_0017s08840 (10)	scaffold_17:7471252-7471776(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54529.1.S1_at	A	A1TS	POPTR_0005s11530	POPTR_0005s11530 (9)	scaffold_5:8366354-8366861(-) (9)	NA	Q9M0C3	RING-H2 finger protein ATL14	AT4G30370.1	RING/U-box superfamily protein 	LOC_Os07g29600.2	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr3g100920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54530.1.S1_s_at	A	A1TS	POPTR_0013s02240	POPTR_0013s02240 (11)	scaffold_13:1341167-1341485(+) (11)	NA	Q9FZ33	Protein AUXIN RESPONSE 4	AT1G54990.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os11g34140.1	expressed protein	Medtr7g139200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5454.1.A1_at	A	A1TA	POPTR_0018s12090	POPTR_0018s12090 (11)	scaffold_18:12675278-12675807(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g32025.1	"uroporphyrinogen-III synthase, putative"	NA	NA	GO:0033014|tetrapyrrole biosynthetic process	GO:0004852|uroporphyrinogen-III synthase activity	NA
PtpAffx.5456.1.S1_at	A	A1TS	POPTR_0013s13060	POPTR_0013s13060 (10)	scaffold_13:13620893-13622039(-) (11)	NA	O60613	15 kDa selenoprotein	AT1G05720.1	selenoprotein family protein 	LOC_Os01g66960.1	"selenoprotein precursor, putative, expressed"	Medtr4g128540.1	"15 kDa selenoprotein precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54562.1.A1_at	A	A1TS	POPTR_0015s13830	POPTR_0015s13830 (11)	scaffold_15:13594803-13595316(-) (11)	NA	Q9FJ93	Dehydration-responsive element-binding protein 1D	AT5G51990.1	C-repeat-binding factor 4 	LOC_Os04g48350.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr1g129500.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.54563.1.S1_at	A	A2TS	POPTR_0008s09190	POPTR_0008s09190 (11)//POPTR_0010s16990 (11)	scaffold_10:15757868-15759457(-) (11)//scaffold_8:5688729-5690195(+) (11)	NA	NA	NA	AT1G69380.1	Protein of unknown function (DUF155) 	LOC_Os07g49410.1	"uncharacterized ACR, YagE family COG1723 containing protein, expressed"	Medtr5g046070.1	Protein of unknown function DUF155 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5457.2.S1_at	A	A1TS	POPTR_0017s02700	POPTR_0017s02700 (11)	scaffold_17:1929187-1929694(-) (11)	NA	Q9CXS4	Centromere protein V	AT5G16940.2	carbon-sulfur lyases 	LOC_Os09g23370.2	"proline-rich protein 6, putative, expressed"	Medtr3g087280.1	"Glutathione-dependent formaldehyde-activating, GFA "	GO:0008152|metabolic process	GO:0016846|carbon-sulfur lyase activity	NA
PtpAffx.54578.1.S1_at	A	A1MS	POPTR_0009s11870	POPTR_0009s11870 (11)	scaffold_9:9778195-9778459(-) (11)	NA	NA	NA	AT4G39300.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g095570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54604.1.S1_at	A	A1TS	POPTR_0001s08140	POPTR_0001s08140 (10)	scaffold_1:6217296-6218729(+) (10)	NA	Q8GW78	"Clp protease-related protein At4g12060, chloroplastic"	AT4G12060.1	Double Clp-N motif protein 	LOC_Os03g14280.1	"ATP-dependent Clp protease ATP-binding subunit, putative, expressed"	Medtr5g011720.1	"Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.5461.1.A1_at	A	A1TS	POPTR_0008s09160	POPTR_0008s09160 (11)	scaffold_8:5677294-5679940(-) (11)	NA	Q54DM1	Mitotic checkpoint protein bub3	AT1G69400.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g39950.1	"mitotic checkpoint protein, putative, expressed"	Medtr5g045940.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54627.1.S1_at	A	A1MS	POPTR_0001s25030	POPTR_0001s25030 (11)	scaffold_1:24288822-24289313(-) (11)	NA	NA	NA	AT2G29180.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 33 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g16470.3	expressed protein	Medtr1g083800.1	"80C09_19, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54627.2.S1_a_at	A	A1TS	POPTR_0001s25030	POPTR_0001s25030 (11)	scaffold_1:24289076-24289745(-) (11)	NA	NA	NA	AT2G29180.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 33 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g16470.3	expressed protein	Medtr1g083800.1	"80C09_19, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54628.1.S1_at	A	A1TS	POPTR_0016s14030	POPTR_0016s14030 (11)	scaffold_16:13282361-13282919(+) (11)	NA	P22195	Cationic peroxidase 1	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os04g55740.1	"peroxidase precursor, putative, expressed"	Medtr7g077890.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.54632.1.S1_at	A	A1TS	POPTR_0001s42750	POPTR_0001s42750 (11)	scaffold_1:42768429-42768861(-) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54639.1.S1_at	A	A1TS	POPTR_0013s10290	POPTR_0013s10290 (11)	scaffold_13:10324561-10325535(+) (11)	NA	O80543	Uncharacterized protein At1g22800	AT1G22800.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os12g10200.1	"SAM-dependent methyltransferase, putative, expressed"	Medtr3g013190.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.54639.2.S1_a_at	A	A2TS	POPTR_0013s10270	POPTR_0013s10290 (11)//POPTR_0013s10270 (11)	scaffold_13:10286212-10288154(+) (11)//scaffold_13:10321702-10323695(+) (11)	NA	O80543	Uncharacterized protein At1g22800	AT1G22800.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os12g10200.1	"SAM-dependent methyltransferase, putative, expressed"	Medtr3g013190.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.5465.1.A1_at	A	A1TS	POPTR_0009s13890	POPTR_0009s13890 (11)	scaffold_9:10979103-10979142(-) (11)	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.5465.1.A1_x_at	A	A1TS	POPTR_0009s13890	POPTR_0009s13890 (11)	scaffold_9:10978379-10979142(-) (11)	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.5465.2.A1_x_at	A	A1TS	POPTR_0004s18240	POPTR_0004s18240 (11)	scaffold_4:18205124-18205642(-) (11)	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os04g16450.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.5465.3.S1_at	A	A1TS	POPTR_0003s17710	POPTR_0003s17710 (10)	scaffold_3:17017623-17018077(+) (10)	NA	Q8LBL5	E3 ubiquitin-protein ligase PRT1	AT3G24800.1	proteolysis 1 	LOC_Os02g40810.1	"Zinc finger, ZZ type domain containing protein, expressed"	Medtr7g064500.1	"Zinc finger, RING-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.5466.1.A1_at	A	A1MS	POPTR_0001s20640	POPTR_0001s20640 (10)	scaffold_1:18642051-18642149(+) (10)	NA	P54697	Myosin-J heavy chain	AT5G20490.1	Myosin family protein with Dil domain 	LOC_Os03g48140.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.54666.1.S1_at	A	A1TS	POPTR_0003s08470	POPTR_0003s08470 (9)	scaffold_3:9897635-9898054(+) (9)	NA	Q8GT41	Putative invertase inhibitor	AT5G46940.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	NA	NA	Medtr8g009110.1	"Putative invertase inhibitor precursor, "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.5467.1.A1_at	A	A1TS	POPTR_0012s07820	POPTR_0012s07820 (11)	scaffold_12:8774836-8775207(+) (11)	NA	Q93X17	Snakin-2	AT5G14920.1	Gibberellin-regulated family protein 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr8g125220.1	"Gonadotropin, beta chain; Gibberellin regulated protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54675.1.A1_at	A	A1TS	POPTR_0007s14050	POPTR_0007s14050 (11)	scaffold_7:13978446-13978899(+) (11)	NA	Q9SL43	Peptide methionine sulfoxide reductase A5	AT2G18030.1	Peptide methionine sulfoxide reductase family protein 	LOC_Os06g04650.1	"peptide methionine sulfoxide reductase, putative, expressed"	Medtr8g090150.1	Methionine sulfoxide reductase A 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0055114|oxidation reduction	"GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor"""	NA
PtpAffx.54684.1.A1_at	A	A1TS	POPTR_0005s11680	POPTR_0005s11680 (10)	scaffold_5:8504709-8505718(-) (10)	NA	Q8LL11	Protein WUSCHEL	AT2G17950.1	Homeodomain-like superfamily protein 	LOC_Os04g56780.1	"homeobox domain containing protein, expressed"	Medtr5g021830.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.54688.1.A1_s_at	A	A1TS	POPTR_0001s35240	POPTR_0001s35240 (11)	scaffold_1:33532610-33532994(-) (11)	NA	NA	NA	AT3G27670.1	ARM repeat superfamily protein 	LOC_Os01g07490.1	"RST1, putative, expressed"	Medtr6g005020.1	"RST1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54692.1.A1_at	A	A1TS	POPTR_0009s08120	POPTR_0009s08120 (10)	scaffold_9:7482472-7482607(+) (10)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54694.1.A1_at	A	A1TS	POPTR_0016s05740	POPTR_0016s05740 (11)	scaffold_16:3677043-3677581(-) (11)	NA	NA	NA	AT2G41640.1	Glycosyltransferase family 61 protein 	LOC_Os01g31370.1	"glycosyltransferase, putative, expressed"	Medtr7g108510.1	Protein of unknown function DUF563 	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.54700.1.A1_at	A	A1TS	POPTR_0005s01480	POPTR_0005s01480 (9)	scaffold_5:964958-967329(-) (9)	NA	Q5T7W7	Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2	AT1G09280.1	"CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). "	LOC_Os12g37630.1	"domain of unknown function family protein, expressed"	Medtr5g076610.1	Rhodanese-like; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54701.1.S1_at	A	A1MS	POPTR_0012s05400	POPTR_0012s05400 (11)	scaffold_12:5044779-5045934(+) (11)	NA	Q556I2	Probable 2-aminoethanethiol dioxygenase	AT1G18490.1	Protein of unknown function (DUF1637) 	LOC_Os08g03870.1	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr2g073770.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.54705.1.S1_at	A	A1TS	POPTR_0004s09200	POPTR_0004s09200 (11)	scaffold_4:7713557-7714095(+) (11)	NA	NA	NA	AT2G01300.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g03130.1	expressed protein	Medtr1g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5471.1.A1_a_at	A	A1TS	POPTR_0009s02070	POPTR_0009s02070 (11)	scaffold_9:2685293-2685435(-) (11)	NA	P48534	"L-ascorbate peroxidase, cytosolic"	AT1G07890.8	ascorbate peroxidase 1 	LOC_Os03g17690.1	"OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed"	Medtr4g080090.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.5471.1.A1_s_at	A	A1TS	POPTR_0009s02070	POPTR_0009s02070 (11)	scaffold_9:2685241-2685994(-) (11)	NA	P48534	"L-ascorbate peroxidase, cytosolic"	AT1G07890.8	ascorbate peroxidase 1 	LOC_Os03g17690.1	"OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed"	Medtr4g080090.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.5471.2.A1_at	A	A1TS	POPTR_0009s02070	POPTR_0009s02070 (11)	scaffold_9:2686008-2686100(-) (11)	NA	P48534	"L-ascorbate peroxidase, cytosolic"	AT1G07890.8	ascorbate peroxidase 1 	LOC_Os03g17690.1	"OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed"	Medtr4g080090.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.5471.3.A1_at	A	A1TS	POPTR_0006s08980	POPTR_0006s08980 (11)	scaffold_6:6611481-6612140(+) (11)	NA	P48534	"L-ascorbate peroxidase, cytosolic"	AT3G09640.2	ascorbate peroxidase 2 	LOC_Os07g49400.4	"OsAPx2 - Cytosolic Ascorbate Peroxidase encoding gene 4,5,6,8, expressed"	Medtr4g080090.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54723.1.S1_s_at	A	A1TS	POPTR_0015s00420	POPTR_0015s00420 (11)	scaffold_15:235228-236319(-) (11)	NA	Q9ZR09	Putative F-box/FBD/LRR-repeat protein At4g03220	AT4G03220.1	Protein with RNI-like/FBD-like domains 	LOC_Os10g03780.1	"OsFBX351 - F-box domain containing protein, expressed"	Medtr8g018890.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5473.1.S1_s_at	A	A1TS	POPTR_0002s09880	POPTR_0002s09880 (11)	scaffold_2:7095769-7096457(+) (11)	NA	NA	NA	AT4G08950.1	Phosphate-responsive 1 family protein 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g144900.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54749.1.S1_at	A	A1TS	POPTR_0014s02590	POPTR_0014s02590 (10)	scaffold_14:2162050-2162614(+) (10)	NA	Q9FUA4	Transcription factor SPATULA	AT4G36930.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os06g06900.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g024210.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.54766.1.A1_at	A	A1TS	POPTR_0019s12290	POPTR_0019s12290 (10)	scaffold_19:13360613-13361208(-) (10)	NA	Q93WU2	Eugenol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os12g25450.1	"O-methyltransferase, putative, expressed"	Medtr5g082580.1	"O-methyltransferase, family 2; Dimerisation "	GO:0008152|metabolic process	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.54771.1.A1_at	A	A1TS	POPTR_0005s06660	POPTR_0005s06660 (11)	scaffold_5:4459402-4460587(-) (11)	NA	Q39111	Gibberellin 20 oxidase 2	AT5G51810.1	gibberellin 20 oxidase 2 	LOC_Os01g66100.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr3g143130.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.5478.1.S1_at	A	A1TS	POPTR_0001s22670	POPTR_0001s22670 (11)	scaffold_1:21561800-21561996(+) (11)	NA	Q9FMR5	Vesicle-associated membrane protein 714	AT5G22360.1	vesicle-associated membrane protein 714 	LOC_Os10g06540.1	"vesicle-associated membrane protein, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.54780.1.A1_a_at	A	A1TS	POPTR_0004s17490	POPTR_0004s17490 (11)	scaffold_4:17682983-17683251(+) (11)	NA	NA	NA	AT4G30150.1	"CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink). "	LOC_Os03g10600.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54782.1.A1_s_at	A	A1TS	POPTR_0001s05710	POPTR_0001s05710 (11)	scaffold_1:4393876-4394122(+) (11)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT3G63530.2	RING/U-box superfamily protein 	LOC_Os03g07790.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g087360.1	"Zinc finger, RING-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54784.1.S1_at	A	A1MS	POPTR_0014s18730	POPTR_0014s18730 (9)	scaffold_14:16106212-16107221(-) (10)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.54789.1.A1_at	A	A1TS	POPTR_0005s03890	POPTR_0005s03890 (10)	scaffold_5:2578452-2578825(-) (10)	NA	Q9MA98	DNA excision repair protein ERCC-1	AT3G05210.1	"nucleotide repair protein, putative "	LOC_Os10g37490.1	"DNA excision repair protein ERCC-1, putative, expressed"	Medtr1g099210.1	DNA repair protein rad10; RuvA domain 2-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004519|endonuclease activity||GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.54796.1.S1_at	A	A1TS	POPTR_0008s01520	POPTR_0008s01520 (10)	scaffold_8:741249-741733(-) (10)	NA	P98204	Phospholipid-transporting ATPase 1	AT5G04930.1	aminophospholipid ATPase 1 	LOC_Os03g20949.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr8g047980.1	Haloacid dehalogenase-like hydrolase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.54801.1.A1_at	A	A1MS	POPTR_0009s16030	POPTR_0009s16030 (11)	scaffold_9:12275753-12275947(+) (11)	NA	O49884	60S ribosomal protein L30	AT1G36240.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.3	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54801.2.A1_at	A	A1MS	POPTR_0009s16030	POPTR_0009s16030 (9)	scaffold_9:12276727-12277064(+) (9)	NA	O49884	60S ribosomal protein L30	AT1G36240.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.3	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54805.1.S1_at	A	A1TS	POPTR_0016s14800	POPTR_0016s14800 (9)	scaffold_16:13938142-13938703(+) (9)	NA	Q96EX2	RING finger and transmembrane domain-containing protein 2	AT5G01960.1	RING/U-box superfamily protein 	LOC_Os01g07390.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr7g080680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54813.1.A1_at	A	A1TS	POPTR_0008s07090	POPTR_0008s07090 (9)	scaffold_8:4302878-4303407(+) (9)	NA	Q9XEF0	Transcription factor bHLH51	AT2G40200.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g06640.2	"basic helix-loop-helix, putative, expressed"	Medtr3g094180.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.5482.1.S1_at	A	A1TS	POPTR_0008s03940	POPTR_0008s03940 (11)	scaffold_8:2169422-2170325(+) (11)	NA	O13828	mRNA decapping complex subunit 2	AT5G13570.1	decapping 2 	LOC_Os02g56210.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity||GO:0030145|manganese ion binding||GO:0003723|RNA binding	NA
PtpAffx.5482.2.S1_a_at	A	A2TS	POPTR_0008s03940	POPTR_0008s03940 (11)//POPTR_0010s22960 (11)	scaffold_10:19664966-19666234(-) (11)//scaffold_8:2168899-2170212(+) (11)	NA	O13828	mRNA decapping complex subunit 2	AT5G13570.1	decapping 2 	LOC_Os02g56210.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity||GO:0030145|manganese ion binding||GO:0003723|RNA binding	NA
PtpAffx.54821.1.A1_at	A	A1TS	POPTR_0006s02780	POPTR_0006s02780 (9)	scaffold_6:1759762-1760196(+) (10)	NA	P36591	Dihydrofolate reductase	AT4G24380.1	"INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g48770.1	"serine hydrolase domain containing protein, expressed"	Medtr7g104240.1	Protein of unknown function DUF341 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54824.1.S1_at	A	A1MS	POPTR_0002s08870	POPTR_0002s08870 (9)	scaffold_2:6229260-6229698(+) (9)	NA	Q8L751	Oxysterol-binding protein-related protein 1C	AT4G08180.2	OSBP(oxysterol binding protein)-related protein 1C 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.54838.2.A1_a_at	A	A1TS	POPTR_0016s10540	POPTR_0016s10540 (11)	scaffold_16:8846166-8847141(+) (11)	NA	Q9CPY6	Uncharacterized protein C17orf39 homolog	AT2G37680.1	CONTAINS InterPro DOMAIN/s: Vacuolar import/degradation protein Vid24 (InterPro:IPR018618); Has 318 Blast hits to 317 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 184; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g47550.2	expressed protein	Medtr4g018080.1	"Uncharacterized protein C17orf39, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54842.1.S1_at	A	A1TA	POPTR_0004s01810	POPTR_0004s01810 (9)	scaffold_4:1088057-1091688(-) (11)	NA	Q9LQQ8	Probable serine/threonine-protein kinase RLCKVII	AT3G20530.1	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr5g099440.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.54853.1.S1_a_at	A	A1TS	POPTR_0008s13230	POPTR_0008s13230 (11)	scaffold_10:12028204-12031227(-) (11)//scaffold_8:8664930-8668224(+) (11)	NA	Q86A88	"Dynein light chain, cytoplasmic"	AT1G23220.1	Dynein light chain type 1 family protein 	LOC_Os02g36990.1	"dynein light chain type 1 family protein, putative, expressed"	Medtr8g119810.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.54853.1.S1_at	A	A1TS	POPTR_0008s13230	POPTR_0008s13230 (11)	scaffold_8:8664838-8668320(+) (11)	NA	Q86A88	"Dynein light chain, cytoplasmic"	AT1G23220.1	Dynein light chain type 1 family protein 	LOC_Os02g36990.1	"dynein light chain type 1 family protein, putative, expressed"	Medtr8g119810.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.5486.1.S1_at	A	A1TS	POPTR_0009s13910	POPTR_0009s13910 (11)	scaffold_9:10993602-10994997(+) (11)	NA	Q54CU7	Trafficking protein particle complex subunit 2-like protein	AT2G20930.1	SNARE-like superfamily protein 	LOC_Os09g36976.1	"trafficking protein particle complex subunit, putative, expressed"	Medtr7g092580.1	Longin-like 	GO:0006888|ER to Golgi vesicle-mediated transport	NA	GO:0005622|intracellular
PtpAffx.549.1.A1_s_at	A	A1TS	POPTR_0009s07020	POPTR_0009s07020 (11)	scaffold_9:6668333-6668555(-) (11)	NA	P34091	60S ribosomal protein L6	AT1G74050.1	Ribosomal protein L6 family protein 	LOC_Os04g39700.1	"60S ribosomal protein L6, putative, expressed"	Medtr3g144820.1	"Ribosomal protein L6E; Ribosomal protein L6, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.549.2.S1_at	A	A1TS	POPTR_0012s14230	POPTR_0012s14230 (11)	scaffold_12:14197041-14197785(-) (11)	NA	Q6PCF8	CDGSH iron-sulfur domain-containing protein 2A	AT5G51720.1	"2 iron, 2 sulfur cluster binding "	LOC_Os07g28400.1	"CDGSH iron sulfur domain-containing protein 1, putative, expressed"	NA	NA	NA	"GO:0051537|""2 iron, 2 sulfur cluster binding"""	GO:0043231|intracellular membrane-bounded organelle
PtpAffx.54906.1.S1_at	A	A1TS	POPTR_0004s23560	POPTR_0004s23560 (9)	scaffold_4:22244308-22244744(+) (9)	NA	NA	NA	AT1G57680.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g66190.2	expressed protein	Medtr2g005140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54906.2.A1_at	A	A1TS	POPTR_0022s00300	POPTR_0022s00300 (9)	scaffold_22:56806-56838(+) (9)	NA	NA	NA	AT1G57680.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g66190.2	expressed protein	Medtr2g005140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54906.3.S1_a_at	A	A1TA	POPTR_0022s00300	POPTR_0022s00300 (11)	scaffold_22:56894-56954(-) (11)	NA	NA	NA	AT1G57680.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g66190.2	expressed protein	Medtr2g005140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54906.3.S1_at	A	A1TA	POPTR_0022s00300	POPTR_0022s00300 (10)	scaffold_22:56768-56967(-) (10)	NA	NA	NA	AT1G57680.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g66190.2	expressed protein	Medtr2g005140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54916.1.A1_at	A	A1TS	POPTR_0014s13570	POPTR_0014s13570 (9)	scaffold_14:9974817-9975118(-) (9)	NA	Q38961	DNA cross-link repair protein SNM1	AT3G26680.3	DNA repair metallo-beta-lactamase family protein 	LOC_Os04g32930.1	"DNA cross-link repair 1A protein, putative, expressed"	Medtr7g099460.1	DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54929.1.A1_at	A	A1TS	POPTR_0005s05470	POPTR_0005s05470 (11)	scaffold_5:3623586-3624091(+) (11)	NA	Q99090	Light-inducible protein CPRF2	AT5G28770.2	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.54956.1.A1_s_at	A	A1TS	POPTR_0005s21750	POPTR_0005s21750 (11)	scaffold_5:20855136-20855193(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.54973.1.A1_s_at	A	A1TS	POPTR_0007s11990	POPTR_0007s11990 (11)	scaffold_7:12333776-12333888(+) (11)	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5498.1.A1_at	A	A1TS	POPTR_0014s12260	POPTR_0014s12260 (11)	scaffold_14:9053879-9054120(+) (11)	NA	P09012	U1 small nuclear ribonucleoprotein A	AT2G47580.1	spliceosomal protein U1A 	LOC_Os05g06280.1	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr5g082430.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.5498.2.S1_at	A	A1TS	POPTR_0014s12270	POPTR_0014s12270 (11)	scaffold_14:9054195-9055867(-) (11)	NA	NA	NA	AT3G52860.1	unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os05g06290.1	expressed protein	Medtr4g141230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54995.1.A1_at	A	A1TS	POPTR_0001s46990	POPTR_0001s46990 (10)	scaffold_1:47320871-47321878(-) (10)	NA	Q9SUC0	"Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial"	AT4G20930.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g46372.1	"dehydrogenase, putative, expressed"	Medtr2g129830.1	"Hydroxyacid dehydrogenase/reductase; 6-phosphogluconate dehydrogenase, C-terminal-like; ; "	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.55005.1.A1_at	A	A1TS	POPTR_0016s10240	POPTR_0016s10240 (11)	scaffold_16:8423978-8424524(-) (11)	NA	Q01745	Galactose oxidase	AT3G53950.1	glyoxal oxidase-related protein 	LOC_Os03g15320.1	"glyoxal oxidase-related, putative, expressed"	Medtr5g039440.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55020.1.A1_at	A	A1MS	POPTR_0006s14760	POPTR_0006s14760 (11)	scaffold_6:12123586-12123622(+) (11)	NA	O81488	PHD finger protein At5g26210	AT5G20510.1	alfin-like 5 	LOC_Os01g66420.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55020.1.A1_s_at	A	A1MS	POPTR_0006s14760	POPTR_0006s14760 (11)	scaffold_6:12123558-12123700(+) (11)	NA	O81488	PHD finger protein At5g26210	AT5G20510.1	alfin-like 5 	LOC_Os01g66420.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55050.1.A1_at	A	A1TS	POPTR_0009s12540	POPTR_0009s12540 (10)	scaffold_9:10221773-10222221(+) (10)	NA	NA	NA	AT2G21350.1	RNA-binding CRS1 / YhbY (CRM) domain protein 	LOC_Os10g36860.1	"CRS1/YhbY domain containing protein, expressed"	Medtr4g096800.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.5506.1.S1_at	A	A1TS	POPTR_0007s12650	POPTR_0007s12650 (11)	scaffold_7:12907579-12908055(+) (11)	NA	Q9SCQ7	Acidic leucine-rich nuclear phosphoprotein 32-related protein	AT3G50690.1	Leucine-rich repeat (LRR) family protein 	LOC_Os07g41694.1	"acidic leucine-rich nuclear phosphoprotein 32-related protein 1, putative, expressed"	Medtr8g093560.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.55073.1.A1_s_at	A	A1TS	POPTR_0004s19420	POPTR_0004s19420 (11)	scaffold_4:19265570-19265866(+) (11)	NA	O23006	LysM domain-containing GPI-anchored protein 2	AT2G17120.1	lysm domain GPI-anchored protein 2 precursor 	LOC_Os09g37600.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	AC235671_7.1	Peptidoglycan-binding LysM AC235671.2 31615-27432 E EGN_Mt090430 200	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.5512.1.A1_at	A	A1TS	POPTR_0001s09590	POPTR_0001s09590 (9)	scaffold_1:7297382-7297859(-) (9)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT5G52430.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g57610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5514.1.S1_a_at	A	A1TA	POPTR_0002s02780	POPTR_0002s02780 (11)	scaffold_2:1687631-1687849(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55187.2.S1_a_at	A	A1TS	POPTR_0018s11600	POPTR_0018s11600 (11)	scaffold_18:12267807-12268335(-) (11)	POPTR_0006s19810 (6)	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
PtpAffx.5519.1.A1_at	A	A1TS	POPTR_0010s11710	POPTR_0010s11710 (11)	scaffold_10:11891048-11891317(-) (11)	NA	Q9ZU96	Ankyrin repeat-containing protein At2g01680	AT2G01680.1	Ankyrin repeat family protein 	LOC_Os02g50270.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr4g157130.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55201.1.S1_s_at	A	A1TS	POPTR_0018s01160	POPTR_0018s01160 (11)	scaffold_18:1070660-1071822(+) (11)	POPTR_0006s26370 (6)	Q84MB2	Protein TIFY 8	AT4G32570.1	TIFY domain protein 8 	NA	NA	Medtr3g136210.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55208.1.S1_at	A	A1TS	POPTR_0015s10090	POPTR_0015s10090 (10)	scaffold_15:11117645-11120370(-) (10)	NA	Q9SJM0	Callose synthase 10	AT2G36850.1	glucan synthase-like 8 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.5522.1.A1_at	A	A1TS	POPTR_0001s45840	POPTR_0001s45840 (11)	scaffold_1:46342509-46343020(+) (11)	NA	A1EC95	HEAT repeat-containing protein 6	AT4G38120.1	ARM repeat superfamily protein 	LOC_Os08g05670.1	"HEAT repeat family protein, putative, expressed"	Medtr3g109600.1	"binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55242.1.S1_at	A	A1TS	POPTR_0006s23460	POPTR_0006s23460 (11)	scaffold_6:22172497-22172991(-) (11)	NA	Q570B4	3-ketoacyl-CoA synthase 10	AT2G26250.1	3-ketoacyl-CoA synthase 10 	LOC_Os03g08360.1	"3-ketoacyl-CoA synthase 10, putative, expressed"	Medtr3g138870.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.55278.1.S1_at	A	A1TS	POPTR_0013s12140	POPTR_0013s12140 (11)	scaffold_13:12782822-12783304(+) (11)	NA	Q54I39	IST1-like protein	AT1G34220.2	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os08g07830.1	"DUF292 domain containing protein, expressed"	Medtr8g088790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5530.1.S1_a_at	A	A2TS	POPTR_0001s04800	POPTR_0001s04800 (11)//POPTR_0003s21590 (11)	scaffold_1:3689918-3690733(+) (11)//scaffold_3:19692340-19693178(+) (11)	NA	Q9SPK5	Formate--tetrahydrofolate ligase	AT1G50480.1	10-formyltetrahydrofolate synthetase 	LOC_Os09g27420.1	"formate--tetrahydrofolate ligase, putative, expressed"	Medtr1g146470.1	"Formate-tetrahydrofolate ligase, FTHFS "	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004329|formate-tetrahydrofolate ligase activity||GO:0005524|ATP binding	NA
PtpAffx.5530.1.S1_at	A	A1TS	POPTR_0003s21590	POPTR_0003s21590 (11)	scaffold_3:19692371-19693299(+) (11)	NA	P28723	Formate--tetrahydrofolate ligase	AT1G50480.1	10-formyltetrahydrofolate synthetase 	LOC_Os09g27420.1	"formate--tetrahydrofolate ligase, putative, expressed"	Medtr1g146470.1	"Formate-tetrahydrofolate ligase, FTHFS "	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004329|formate-tetrahydrofolate ligase activity||GO:0005524|ATP binding	NA
PtpAffx.5530.2.S1_at	A	A1TS	POPTR_0001s04800	POPTR_0001s04800 (11)	scaffold_1:3690017-3690841(+) (11)	NA	Q9SPK5	Formate--tetrahydrofolate ligase	AT1G50480.1	10-formyltetrahydrofolate synthetase 	LOC_Os09g27420.1	"formate--tetrahydrofolate ligase, putative, expressed"	Medtr1g146470.1	"Formate-tetrahydrofolate ligase, FTHFS "	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004329|formate-tetrahydrofolate ligase activity||GO:0005524|ATP binding	NA
PtpAffx.5534.1.A1_at	A	A1TS	POPTR_0014s17900	POPTR_0014s17900 (11)	scaffold_14:14434866-14435319(-) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.55359.1.S1_at	A	A1TS	POPTR_0289s00230	POPTR_0289s00230 (11)	scaffold_17:5518362-5518923(-) (11)//scaffold_289:8700-9261(+) (11)//scaffold_289:16189-16749(+) (11)	NA	Q9D967	Magnesium-dependent phosphatase 1	AT2G14110.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g52730.1	"magnesium-dependent phosphatase 1, putative, expressed"	Medtr2g009620.1	"HAD-superfamily phosphatase subfamily IIIC; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55360.1.S1_at	A	A1TS	POPTR_0010s10150	POPTR_0010s10150 (11)	scaffold_10:10719599-10720114(+) (11)	NA	Q9M651	RAN GTPase-activating protein 2	AT5G19320.1	RAN GTPase activating protein 2 	LOC_Os05g46560.2	"RAN GTPase-activating protein 1, putative, expressed"	Medtr1g133010.1	"Leucine-rich repeat; Leucine-rich repeat, ribonuclease inhibitor subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.5537.1.A1_at	A	A1TS	POPTR_0013s00460	POPTR_0013s00460 (10)	scaffold_13:189943-190414(-) (10)	NA	NA	NA	AT3G62200.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os07g44320.1	expressed protein	AC235094_25.1	Protein of unknown function DUF537 AC235094.1 130248-133379 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55376.1.S1_at	A	A1TS	POPTR_0014s14000	POPTR_0014s14000 (10)	scaffold_14:10250016-10250543(+) (10)	NA	Q9FLC0	Peroxidase 52	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os06g35520.1	"peroxidase precursor, putative, expressed"	Medtr2g098020.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.5539.1.S1_at	A	A1TS	POPTR_0006s07000	POPTR_0006s07000 (9)	scaffold_6:5043842-5044963(-) (9)	NA	NA	NA	AT5G40080.1	Mitochondrial ribosomal protein L27 	LOC_Os02g40490.1	conserved hypothetical protein	Medtr5g048500.1	"mitochondrial ribosomal protein L41, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5539.2.S1_a_at	A	A2TS	POPTR_0005s17380	POPTR_0006s07000 (11)//POPTR_0005s17380 (11)	scaffold_5:14699045-14699560(-) (11)//scaffold_6:5044968-5045500(-) (11)	NA	NA	NA	AT5G40080.1	Mitochondrial ribosomal protein L27 	LOC_Os02g40490.1	conserved hypothetical protein	Medtr5g048500.1	"mitochondrial ribosomal protein L41, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5539.2.S1_at	A	A1TS	POPTR_0005s17380	POPTR_0005s17380 (10)	scaffold_5:14697902-14699615(-) (11)	NA	NA	NA	AT5G40080.1	Mitochondrial ribosomal protein L27 	LOC_Os02g40490.1	conserved hypothetical protein	Medtr5g048500.1	"mitochondrial ribosomal protein L41, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55390.1.A1_at	A	A1TS	POPTR_0018s14820	POPTR_0018s14820 (10)	scaffold_18:14883908-14884251(+) (10)	NA	NA	NA	AT5G58130.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g04560.1	"marker Xucw84, putative, expressed"	Medtr2g055570.1	"Pyridoxal-dependent decarboxylase; Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55417.1.A1_at	A	A1TS	POPTR_0003s14550	POPTR_0003s14550 (11)	scaffold_3:14603911-14604365(-) (11)	NA	Q6N075	Major facilitator superfamily domain-containing protein 5	AT1G64650.1	Major facilitator superfamily protein 	LOC_Os03g02380.1	"major facilitator superfamily domain-containing protein 5, putative, expressed"	Medtr3g123410.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55421.1.A1_s_at	A	A1TS	POPTR_0002s14190	POPTR_0002s14190 (11)	scaffold_2:10512463-10513191(-) (11)	NA	NA	NA	AT3G60450.1	Phosphoglycerate mutase family protein 	LOC_Os03g01180.1	"phosphoglycerate mutase, putative, expressed"	Medtr8g006090.1	PRIB5 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55429.1.S1_at	A	A1TS	POPTR_0007s05350	POPTR_0007s05350 (10)	scaffold_7:3446370-3446984(+) (10)	NA	Q54ED4	Glutamate-rich WD repeat-containing protein 1	AT2G19540.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os12g03822.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g024010.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55446.1.S1_at	A	A1MS	POPTR_0015s00910	POPTR_0015s00910 (11)	scaffold_15:522482-523322(-) (11)	NA	NA	NA	AT5G53620.3	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). 	LOC_Os08g43060.3	expressed protein	Medtr3g123170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55446.1.S1_s_at	A	A1TS	POPTR_0015s00910	POPTR_0015s00910 (11)	scaffold_15:521891-523240(-) (11)	NA	NA	NA	AT5G53620.3	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). 	LOC_Os08g43060.3	expressed protein	Medtr3g123170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5545.1.S1_a_at	A	A1TS	POPTR_0004s01780	POPTR_0004s01780 (11)	scaffold_4:1077864-1079086(-) (11)	NA	Q9ZS88	Derlin-2.2	AT4G04860.1	DERLIN-2.2 	LOC_Os03g63520.1	"Der1-like family domain containing protein, expressed"	Medtr4g160130.1	Der1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5545.2.S1_at	A	A1TA	POPTR_0002s10880	POPTR_0002s10880 (9)	scaffold_2:7922811-7923259(+) (9)	NA	Q38827	Auxin-responsive protein IAA9	AT5G65670.2	indole-3-acetic acid inducible 9 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g078700.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.55455.1.S1_a_at	A	A3TS	POPTR_0008s15990	POPTR_0008s15990 (11)//POPTR_0658s00200 (11)//POPTR_0010s08990 (11)	scaffold_10:9772236-9772379(+) (11)//scaffold_658:6027-6170(-) (11)//scaffold_8:10672622-10672765(-) (11)	NA	O48780	3-ketoacyl-CoA synthase 11	AT2G26640.1	3-ketoacyl-CoA synthase 11 	LOC_Os06g39750.3	"3-ketoacyl-CoA synthase, putative, expressed"	AC233668_12.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase AC233668.2 25806-29562 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.55456.1.A1_at	A	A1TS	POPTR_0010s06640	POPTR_0010s06640 (11)	scaffold_10:7926580-7927149(-) (11)//scaffold_468:4143-4675(+) (9)	POPTR_0010s06650 (7)//POPTR_0468s00200 (6)	Q9FI40	BAHD acyltransferase At5g47980	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g10420.1	"transferase family domain containing protein, expressed"	Medtr5g092230.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.5546.1.A1_at	A	A1TS	POPTR_0009s14080	POPTR_0009s14080 (9)	scaffold_9:11101102-11101572(+) (9)	NA	NA	NA	AT1G12400.1	"Nucleotide excision repair, TFIIH, subunit TTDA "	LOC_Os07g38600.1	"REX1 DNA Repair family protein, expressed"	Medtr5g067730.1	REX1 DNA Repair 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding	NA
PtpAffx.55460.1.A1_at	A	A1TS	POPTR_0014s10220	POPTR_0014s10220 (11)	scaffold_14:7671740-7672151(+) (11)	NA	P28002	Caffeic acid 3-O-methyltransferase	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr7g146180.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.55460.2.S1_a_at	A	A5TS	POPTR_0002s18120	POPTR_0002s18160 (11)//POPTR_0002s18150 (11)//POPTR_0014s10220 (11)//POPTR_0002s18120 (11)//POPTR_0002s18130 (11)	scaffold_14:7671156-7671799(+) (11)//scaffold_2:13989546-13990237(-) (11)//scaffold_2:14014575-14015266(-) (11)//scaffold_2:14077467-14078159(-) (11)//scaffold_2:14112707-14113398(-) (11)	NA	Q43609	Caffeic acid 3-O-methyltransferase	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr7g146180.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.55460.2.S1_at	A	A3TS	POPTR_0002s18130	POPTR_0002s18150 (11)//POPTR_0002s18130 (11)//POPTR_0002s18140 (9)	scaffold_2:13989220-13990277(-) (10)//scaffold_2:14014249-14015306(-) (11)//scaffold_2:14034195-14035183(-) (9)//scaffold_2:14077141-14078199(-) (11)	POPTR_0002s18120 (7)//POPTR_0002s18160 (6)	Q43609	Caffeic acid 3-O-methyltransferase	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr7g146180.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.55461.1.S1_at	A	A1TS	POPTR_0008s17520	POPTR_0008s17520 (10)	scaffold_8:11798291-11798676(+) (11)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os05g34150.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55477.1.S1_s_at	A	A1TS	POPTR_0018s06210	POPTR_0018s06210 (11)	scaffold_18:5932092-5933286(+) (11)	NA	P53383	Protein mrp homolog	AT3G24430.1	ATP binding 	LOC_Os01g52170.1	expressed protein	Medtr6g102220.1	Mrp 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
PtpAffx.55484.1.S1_at	A	A1TS	POPTR_0005s23500	POPTR_0005s23500 (11)	scaffold_5:22231469-22232373(-) (11)	NA	Q42777	"Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial"	AT1G03090.2	"methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) "	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr1g083990.1	Pyruvate carboxylase; 	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.55513.1.S1_at	A	A1TS	POPTR_0002s16980	POPTR_0002s16980 (11)	scaffold_2:12747504-12749819(+) (11)	NA	NA	NA	AT1G01430.1	TRICHOME BIREFRINGENCE-LIKE 25 	LOC_Os05g12380.1	expressed protein	Medtr5g036370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5552.1.S1_at	A	A1TS	POPTR_0001s13740	POPTR_0001s13740 (11)	scaffold_1:10803686-10804080(-) (11)	NA	Q9C5U1	Histidine kinase 3	AT1G27320.1	histidine kinase 3 	LOC_Os01g69920.1	"histidine kinase, putative, expressed"	Medtr3g104030.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.5552.2.S1_at	A	A1TS	POPTR_0003s16950	POPTR_0003s16950 (11)	scaffold_3:16434249-16434529(-) (11)	NA	Q9C5U1	Histidine kinase 3	AT1G27320.1	histidine kinase 3 	LOC_Os01g69920.1	"histidine kinase, putative, expressed"	Medtr3g104030.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.5552.2.S1_s_at	A	A1TS	POPTR_0003s16950	POPTR_0003s16950 (11)	scaffold_3:16433982-16434252(-) (11)	NA	Q9C5U1	Histidine kinase 3	AT1G27320.1	histidine kinase 3 	LOC_Os01g69920.1	"histidine kinase, putative, expressed"	Medtr3g104030.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.5556.1.A1_s_at	A	A1TS	POPTR_0015s01360	POPTR_0015s01360 (11)	scaffold_15:841246-843604(-) (11)	NA	Q9ZR09	Putative F-box/FBD/LRR-repeat protein At4g03220	AT4G03220.1	Protein with RNI-like/FBD-like domains 	LOC_Os10g03870.1	"OsFBX353 - F-box domain containing protein, expressed"	Medtr8g018890.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5557.1.S1_at	A	A1TS	POPTR_0002s09730	POPTR_0002s09730 (11)	scaffold_2:6973328-6975075(+) (11)	POPTR_0005s17100 (7)	Q43125	Cryptochrome-1	AT4G08920.1	cryptochrome 1 	LOC_Os04g37920.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g072760.2	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.55575.1.S1_at	A	A1TS	POPTR_0005s09680	POPTR_0005s09680 (10)	scaffold_5:6775316-6776476(+) (10)	NA	P41380	Eukaryotic initiation factor 4A-3	AT3G19760.1	eukaryotic initiation factor 4A-III 	LOC_Os03g36930.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g120800.1	"Helicase, C-terminal; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55596.1.A1_at	A	A1TS	POPTR_0014s15320	POPTR_0014s15320 (11)	scaffold_14:11397461-11397887(-) (11)	NA	Q9C519	WRKY transcription factor 6	AT1G62300.1	WRKY family transcription factor 	LOC_Os01g14440.1	"OsWRKY1v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr2g104410.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.556.1.A1_x_at	A	A1TS	POPTR_0009s12710	POPTR_0009s12710 (11)	scaffold_9:10322715-10322994(+) (11)	NA	Q944G9	"Probable fructose-bisphosphate aldolase 2, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.556.3.A1_at	A	A1TS	POPTR_0008s06640	POPTR_0008s06640 (11)	scaffold_8:3982375-3983238(+) (11)	NA	NA	NA	AT5G05740.2	ethylene-dependent gravitropism-deficient and yellow-green-like 2 	LOC_Os01g04900.1	"peptidase M50 family protein, putative, expressed"	Medtr5g089640.1	Peptidase M50 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.556.4.S1_at	A	A1MS	POPTR_0004s16920	POPTR_0004s16920 (11)	scaffold_4:17300748-17300855(+) (11)	NA	Q944G9	"Probable fructose-bisphosphate aldolase 2, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.556.5.S1_s_at	A	A1TS	POPTR_0004s16920	POPTR_0004s16920 (11)	scaffold_4:17300624-17301239(+) (11)	NA	Q944G9	"Probable fructose-bisphosphate aldolase 2, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.55625.1.A1_at	A	A1TS	POPTR_0001s33770	POPTR_0001s33770 (11)	scaffold_1:31923207-31923995(-) (11)	NA	P0AFR6	Uncharacterized protein yciO	AT3G01920.1	DHBP synthase RibB-like alpha/beta domain 	LOC_Os08g41910.1	"Sua5/YciO/YrdC/YwlC family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55625.2.S1_a_at	A	A1TS	POPTR_0001s33770	POPTR_0001s33770 (11)	scaffold_1:31924925-31925619(-) (11)	NA	P0AFR6	Uncharacterized protein yciO	AT3G01920.1	DHBP synthase RibB-like alpha/beta domain 	LOC_Os08g41910.1	"Sua5/YciO/YrdC/YwlC family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55639.1.A1_at	A	A1TS	POPTR_0010s16500	POPTR_0010s16500 (9)	scaffold_10:15443512-15444028(+) (9)	NA	Q9ZPR0	"Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial"	AT2G03690.1	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein 	LOC_Os04g57790.1	"ubiquinone biosynthesis protein COQ4, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0006744|ubiquinone biosynthetic process	NA	NA
PtpAffx.55639.2.A1_a_at	A	A1TS	POPTR_0010s16500	POPTR_0010s16500 (11)	scaffold_10:15442492-15442813(+) (11)	NA	Q9ZPR0	"Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial"	AT2G03690.1	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein 	LOC_Os04g57790.1	"ubiquinone biosynthesis protein COQ4, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0006744|ubiquinone biosynthetic process	NA	NA
PtpAffx.5565.1.S1_at	A	A1TS	POPTR_0006s24510	POPTR_0006s24510 (11)	scaffold_6:23095055-23095559(-) (11)	NA	NA	NA	AT5G11870.2	Alkaline phytoceramidase (aPHC) 	LOC_Os01g73120.1	expressed protein	Medtr2g006780.1	Protein phosphatase 2C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5566.1.A1_at	A	A1TS	POPTR_0010s23330	POPTR_0010s23330 (11)	scaffold_10:19945229-19945573(+) (11)	NA	Q8VZ40	U-box domain-containing protein 14	AT3G54850.1	plant U-box 14 	LOC_Os06g01304.1	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.5569.1.S1_at	A	A1TS	POPTR_0003s09460	POPTR_0003s09460 (9)	scaffold_3:10728810-10729236(-) (9)	NA	O82291	"Probable plastid-lipid-associated protein 3, chloroplastic"	AT2G35490.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os10g42500.1	"PAP fibrillin family domain containing protein, expressed"	Medtr5g029500.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.55699.1.A1_at	A	A1MS	POPTR_0013s03840	POPTR_0013s03840 (9)	scaffold_13:2500564-2500959(+) (9)	NA	Q9SR01	"Pentatricopeptide repeat-containing protein At3g04750, mitochondrial"	AT3G04750.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g53170.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55714.1.S1_s_at	A	A8TS	POPTR_0001s23050	POPTR_0001s23070 (11)//POPTR_0004s19050 (11)//POPTR_0019s02590 (11)//POPTR_0001s23050 (11)//POPTR_0217s00210 (11)//POPTR_0004s10900 (11)//POPTR_0004s18990 (11)//POPTR_0001s23080 (11)	scaffold_1:22135508-22135705(-) (11)//scaffold_1:22175337-22175534(-) (11)//scaffold_1:22208663-22208860(-) (11)//scaffold_19:2350211-2350413(-) (11)//scaffold_217:31961-32149(+) (11)//scaffold_4:9476310-9476498(+) (11)//scaffold_4:18849776-18849976(+) (11)//scaffold_4:18947793-18947993(+) (11)	NA	Q7XKV4	Beta-glucosidase 12	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39864.4	"Os4bglu11 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.5573.1.A1_at	A	A1TS	POPTR_0002s20750	POPTR_0002s20750 (11)	scaffold_2:16849407-16849889(-) (11)	NA	Q9SW70	Stress-related protein	AT3G05500.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr2g015120.1	Rubber elongation factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55737.1.S1_at	A	A1TS	POPTR_0014s04230	POPTR_0014s04230 (10)	scaffold_14:3327266-3328281(-) (10)	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	NA	GO:0004721|phosphoprotein phosphatase activity	NA
PtpAffx.55747.1.A1_at	A	A1TS	POPTR_0015s11730	POPTR_0015s11730 (9)	scaffold_15:12282745-12282924(+) (9)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr3g151260.1	RNA recognition motif 2 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.5576.1.A1_at	A	A1TS	POPTR_0008s15940	POPTR_0008s15940 (11)	scaffold_8:10633568-10633938(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55786.1.S1_s_at	A	A2TS	POPTR_0013s11520	POPTR_0013s11520 (11)//POPTR_0019s11150 (11)	scaffold_13:12134353-12134677(-) (11)//scaffold_19:12526579-12526903(-) (11)	NA	NA	NA	AT4G09510.1	cytosolic invertase 2 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55790.1.A1_at	A	A1TS	POPTR_0004s11540	POPTR_0004s11540 (11)	scaffold_4:10304848-10305244(-) (11)	NA	NA	NA	AT4G26190.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g01850.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g071320.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55795.1.A1_at	A	A1TS	POPTR_0005s06460	POPTR_0005s06460 (11)	scaffold_5:4305135-4308523(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g08790.1	"TPR domain protein, putative, expressed"	Medtr4g142860.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5580.2.S1_s_at	A	A1TS	POPTR_0001s36810	POPTR_0001s36810 (11)	scaffold_1:35571630-35571798(-) (11)	NA	A9LNK9	Cleavage and polyadenylation specificity factor CPSF30	AT1G30460.1	cleavage and polyadenylation specificity factor 30 	LOC_Os06g46400.1	"ATCPSF30/CPSF30, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.5580.4.S1_at	A	A1MS	POPTR_0008s03670	POPTR_0008s03670 (11)	scaffold_8:1996883-1997364(-) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G04250.2	Cysteine proteinases superfamily protein 	LOC_Os02g57410.10	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g120470.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5581.2.S1_a_at	A	A1TS	POPTR_0001s20890	POPTR_0001s20890 (11)	scaffold_1:19123465-19124698(+) (11)	NA	NA	NA	AT1G52530.1	CONTAINS InterPro DOMAIN/s: Hus1-like protein (InterPro:IPR007150); Has 129 Blast hits to 128 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 10; Plants - 47; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os04g44620.2	"hus1-like protein, expressed"	Medtr1g099350.1	"F6D8.25, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55811.1.A1_at	A	A1TS	POPTR_0006s04760	POPTR_0006s04760 (11)	scaffold_6:3290700-3291656(-) (11)	NA	O22229	NADPH-dependent thioredoxin reductase 3	AT2G41680.1	NADPH-dependent thioredoxin reductase C 	LOC_Os07g46410.1	"bifunctional thioredoxin reductase/thioredoxin, putative, expressed"	Medtr5g024830.1	"Pyridine nucleotide-disulphide oxidoreductase, class-II "	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.55815.2.A1_a_at	A	A1TS	POPTR_0002s09930	POPTR_0002s09930 (11)	scaffold_2:7120508-7121660(+) (11)	NA	Q9ZPE4	F-box protein FBW2	AT4G08980.5	F-BOX WITH WD-40 2 	LOC_Os02g52130.9	"OsFBX61 - F-box domain containing protein, expressed"	Medtr5g073570.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55815.2.A1_at	A	A1MS	POPTR_0002s09930	POPTR_0002s09930 (10)	scaffold_2:7120430-7121906(+) (10)	NA	Q9ZPE4	F-box protein FBW2	AT4G08980.5	F-BOX WITH WD-40 2 	LOC_Os02g52130.9	"OsFBX61 - F-box domain containing protein, expressed"	Medtr5g073570.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5584.1.S1_at	A	A1TS	POPTR_0006s25040	POPTR_0006s25040 (11)	scaffold_6:23491717-23493176(+) (11)	NA	Q8CDF7	Exonuclease 3'-5' domain-containing protein 1	AT2G25910.1	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein 	LOC_Os01g38620.2	"3-5 exonuclease/ nucleic acid binding protein, putative, expressed"	NA	NA	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.5584.2.S1_at	A	A1TS	POPTR_0018s04700	POPTR_0018s04700 (10)	scaffold_18:3977866-3978178(-) (10)	NA	Q8NHP7	Exonuclease 3'-5' domain-containing protein 1	AT2G25910.1	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein 	LOC_Os01g38620.2	"3-5 exonuclease/ nucleic acid binding protein, putative, expressed"	NA	NA	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.5584.3.S1_a_at	A	A1TS	POPTR_0018s04700	POPTR_0018s04700 (10)	scaffold_18:3978238-3979628(-) (10)	NA	Q8NHP7	Exonuclease 3'-5' domain-containing protein 1	AT2G25910.1	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein 	LOC_Os01g38620.2	"3-5 exonuclease/ nucleic acid binding protein, putative, expressed"	NA	NA	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.5584.4.S1_a_at	A	A1TS	POPTR_0018s04700	POPTR_0018s04700 (10)	scaffold_18:3982221-3983027(-) (10)	NA	Q8NHP7	Exonuclease 3'-5' domain-containing protein 1	AT2G25910.1	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein 	LOC_Os01g38620.2	"3-5 exonuclease/ nucleic acid binding protein, putative, expressed"	NA	NA	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003723|RNA binding	GO:0005622|intracellular
PtpAffx.5585.1.S1_a_at	A	A2TS	POPTR_0012s02760	POPTR_0012s02760 (11)//POPTR_0015s01040 (11)	scaffold_12:2280498-2280698(+) (11)//scaffold_15:600429-600630(-) (11)	NA	NA	NA	AT4G27700.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os09g36040.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g123390.2	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5585.1.S1_at	A	A1TS	POPTR_0015s01040	POPTR_0015s01040 (11)	scaffold_15:599905-600399(-) (11)	NA	NA	NA	AT4G27700.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os09g36040.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g123390.2	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5585.2.A1_at	A	A1MS	POPTR_0012s02760	POPTR_0012s02760 (9)	scaffold_12:2280740-2281154(+) (11)	NA	NA	NA	AT4G27700.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os09g36040.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g123390.2	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55857.1.A1_at	A	A1TS	POPTR_0004s06280	POPTR_0004s06280 (10)	scaffold_4:4977133-4978437(+) (11)	NA	NA	NA	AT1G29690.1	MAC/Perforin domain-containing protein 	LOC_Os01g54510.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr2g021290.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5590.2.S1_at	A	A1TS	POPTR_0003s15630	POPTR_0003s15630 (10)	scaffold_3:15372467-15372500(-) (10)	NA	O96623	Actin-related protein 2/3 complex subunit 2	AT1G30825.1	"Arp2/3 complex, 34 kD subunit p34-Arc "	LOC_Os01g46580.1	"actin-related protein 2/3 complex subunit 2, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.5590.2.S1_s_at	A	A2TS	POPTR_0001s12450	POPTR_0003s15630 (10)//POPTR_0001s12450 (10)	scaffold_1:9661769-9662258(-) (10)//scaffold_3:15374572-15375053(-) (10)	NA	O14241	Actin-related protein 2/3 complex subunit 2	AT1G30825.1	"Arp2/3 complex, 34 kD subunit p34-Arc "	LOC_Os01g46580.1	"actin-related protein 2/3 complex subunit 2, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.5590.3.S1_at	A	A1TS	POPTR_0001s12450	POPTR_0001s12450 (9)	scaffold_1:9659721-9662342(-) (9)	NA	O14241	Actin-related protein 2/3 complex subunit 2	AT1G30825.1	"Arp2/3 complex, 34 kD subunit p34-Arc "	LOC_Os01g46580.1	"actin-related protein 2/3 complex subunit 2, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.5590.4.A1_a_at	A	A1TS	POPTR_0001s12450	POPTR_0001s12450 (11)	scaffold_1:9656141-9658925(-) (11)	NA	O14241	Actin-related protein 2/3 complex subunit 2	AT1G30825.1	"Arp2/3 complex, 34 kD subunit p34-Arc "	LOC_Os01g46580.1	"actin-related protein 2/3 complex subunit 2, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.55907.1.S1_at	A	A1TS	POPTR_0010s17740	POPTR_0010s17740 (9)	scaffold_10:16214168-16214905(-) (9)	NA	Q9BSJ8	Extended synaptotagmin-1	AT3G19830.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g58230.1	"C2 domain containing protein, putative, expressed"	Medtr8g112680.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55925.1.S1_at	A	A2TS	POPTR_0002s15790	POPTR_0002s15790 (11)//POPTR_0002s15760 (10)	scaffold_2:11755373-11756102(-) (10)//scaffold_2:11768711-11769431(-) (11)	NA	NA	NA	AT3G09970.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os04g33470.2	"Ser/Thr protein phosphatase family protein, putative, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.55932.1.S1_at	A	A1TS	POPTR_0006s20610	POPTR_0006s20610 (11)	scaffold_6:19633445-19633946(-) (11)	NA	NA	NA	AT3G57990.1	unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). 	LOC_Os09g31458.1	expressed protein	Medtr5g014330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55940.1.S1_at	A	A1TS	POPTR_0002s05320	POPTR_0002s05320 (10)	scaffold_2:3462214-3462693(-) (10)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.2	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g086320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55943.1.S1_at	A	A1TS	POPTR_0005s09400	POPTR_0005s09400 (9)	scaffold_5:6559637-6560196(+) (11)	NA	Q43082	"Porphobilinogen deaminase, chloroplastic"	AT5G08280.1	hydroxymethylbilane synthase 	LOC_Os02g07230.2	"porphobilinogen deaminase, chloroplast precursor, putative, expressed"	Medtr4g104170.1	Porphobilinogen deaminase 	GO:0033014|tetrapyrrole biosynthetic process	GO:0004418|hydroxymethylbilane synthase activity	NA
PtpAffx.5595.1.A1_s_at	A	A1TS	POPTR_0012s09110	POPTR_0012s09110 (11)	scaffold_12:10181334-10181725(+) (11)//scaffold_19:8847144-8847328(+) (9)	NA	Q9FGS5	High-affinity nitrate transporter 3.1	AT5G50200.1	nitrate transmembrane transporters 	LOC_Os02g38230.1	"high affinity nitrate transporter, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5596.1.A1_at	A	A1TS	POPTR_0010s24050	POPTR_0010s24050 (11)	scaffold_10:20438526-20438927(-) (11)	NA	NA	NA	AT3G57810.1	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr3g103530.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5596.2.A1_a_at	A	A1TS	POPTR_0010s24050	POPTR_0010s24050 (11)	scaffold_10:20440425-20441342(-) (11)	NA	NA	NA	AT3G57810.1	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr3g103530.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56001.1.A1_at	A	A1MS	POPTR_0006s29290	POPTR_0006s29290 (9)	scaffold_6:26711102-26711381(-) (9)	NA	NA	NA	AT2G24395.1	chaperone protein dnaJ-related 	LOC_Os08g40919.2	expressed protein	Medtr3g133030.1	"chaperone protein dnaJ-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56004.1.A1_at	A	A1TS	POPTR_0008s12810	POPTR_0008s12810 (9)	scaffold_8:8309210-8309608(+) (9)	NA	NA	NA	AT1G70985.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56005.1.A1_at	A	A1TS	POPTR_0007s13000	POPTR_0007s13000 (11)	scaffold_7:13184460-13185648(-) (11)	NA	NA	NA	AT1G75250.1	RAD-like 6 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr3g162290.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5602.1.S1_at	A	A1TS	POPTR_0009s02690	POPTR_0009s02690 (11)	scaffold_9:3452339-3456033(+) (11)	NA	P93841	"4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment)"	AT2G26930.1	4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 	LOC_Os01g58790.2	"GHMP kinases ATP-binding protein, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.5602.2.S1_a_at	A	A1TS	POPTR_0001s23230	POPTR_0001s23230 (11)	scaffold_1:22510815-22511436(+) (11)	NA	P93841	"4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment)"	AT2G26930.1	4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 	LOC_Os01g58790.2	"GHMP kinases ATP-binding protein, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.56020.1.S1_s_at	A	A1TS	POPTR_0010s02860	POPTR_0010s02860 (11)	scaffold_10:3348128-3348842(-) (11)	NA	Q42910	"Pyruvate, phosphate dikinase, chloroplastic"	AT4G15530.6	pyruvate orthophosphate dikinase 	LOC_Os05g33570.1	"pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed"	Medtr8g140100.1	"Pyruvate phosphate dikinase, PEP/pyruvate-binding; "	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.5603.1.A1_at	A	A1MS	POPTR_0008s00850	POPTR_0008s00850 (11)	scaffold_8:397350-397866(+) (11)	NA	Q9LU41	"Calcium-transporting ATPase 9, plasma membrane-type"	AT3G21180.1	autoinhibited Ca(2+)-ATPase 9 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.5604.1.S1_at	A	A1TS	POPTR_0018s07090	POPTR_0018s07090 (11)	scaffold_18:7263531-7264097(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G26100.1	casein kinase 1 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr2g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.56050.1.A1_s_at	A	A1TS	POPTR_0006s06350	POPTR_0006s06350 (11)	scaffold_6:4533247-4533812(+) (11)	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT5G20260.1	Exostosin family protein 	LOC_Os02g39960.1	"exostosin family protein, putative"	Medtr8g121610.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.56073.1.A1_at	A	A1MS	POPTR_0005s10510	POPTR_0005s10510 (11)	scaffold_5:7560286-7560778(-) (11)	NA	P36616	Protein kinase dsk1	AT4G35500.1	Protein kinase superfamily protein 	LOC_Os09g37949.1	"serine/threonine-protein kinase SRPK1, putative, expressed"	Medtr5g024280.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.56073.2.S1_at	A	A1TS	POPTR_0012s06410	POPTR_0012s06410 (10)	scaffold_12:6783271-6783613(-) (10)	POPTR_0005s10510 (8)	P36616	Protein kinase dsk1	AT4G35500.1	Protein kinase superfamily protein 	LOC_Os09g37949.1	"serine/threonine-protein kinase SRPK1, putative, expressed"	Medtr5g024280.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5608.1.S1_at	A	A1TS	POPTR_0002s02250	POPTR_0002s02250 (11)	scaffold_2:1252936-1253464(+) (11)	NA	Q54XX1	Signal recognition particle receptor subunit beta	AT5G05670.1	signal recognition particle binding 	LOC_Os08g41250.2	"signal recognition particle receptor subunit beta, putative, expressed"	Medtr5g035240.1	"Signal recognition particle receptor subunit beta, related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.5608.2.S1_a_at	A	A1TS	POPTR_0002s02250	POPTR_0002s02250 (11)	scaffold_2:1250054-1251294(+) (11)	NA	Q54XX1	Signal recognition particle receptor subunit beta	AT5G05670.1	signal recognition particle binding 	LOC_Os08g41250.2	"signal recognition particle receptor subunit beta, putative, expressed"	Medtr5g035240.1	"Signal recognition particle receptor subunit beta, related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.56094.1.A1_at	A	A1TS	POPTR_0003s12300	POPTR_0003s12300 (11)	scaffold_3:12926568-12927108(+) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT4G23060.1	IQ-domain 22 	LOC_Os04g48160.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g129280.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56109.1.S1_a_at	A	A1TS	POPTR_0005s11320	POPTR_0005s11320 (11)	scaffold_5:8204009-8204452(+) (11)	NA	Q66HG0	E3 ubiquitin-protein ligase RNF13	AT5G66160.1	receptor homology region transmembrane domain ring H2 motif protein 1 	LOC_Os03g07130.2	"RING finger protein 13, putative, expressed"	Medtr6g098760.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56109.2.S1_a_at	A	A1TS	POPTR_0005s11320	POPTR_0005s11320 (11)	scaffold_5:8204009-8204419(+) (11)	NA	Q66HG0	E3 ubiquitin-protein ligase RNF13	AT5G66160.1	receptor homology region transmembrane domain ring H2 motif protein 1 	LOC_Os03g07130.2	"RING finger protein 13, putative, expressed"	Medtr6g098760.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56124.1.A1_at	A	A1TS	POPTR_0002s23380	POPTR_0002s23380 (11)	scaffold_2:20898553-20901674(+) (11)	NA	P0CB22	Histone-lysine N-methyltransferase ATX2	AT2G31650.1	homologue of trithorax 	LOC_Os09g04890.1	"histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed"	Medtr7g021140.1	"PWWP; FY-rich, N-terminal; FY-rich, C-terminal; Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.56132.1.S1_at	A	A1TS	POPTR_0013s12130	POPTR_0013s12130 (10)	scaffold_13:12772967-12773525(+) (10)	NA	P32980	"ATP synthase delta chain, chloroplastic"	AT4G09650.1	ATP synthase delta-subunit gene 	LOC_Os02g51470.3	"ATP synthase F1, delta subunit family protein, putative, expressed"	Medtr8g109030.1	"H+-transporting two-sector ATPase, delta (OSCP) subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)""||GO:0005886|plasma membrane"
PtpAffx.56139.1.S1_at	A	A1TS	POPTR_0007s11190	POPTR_0007s11190 (11)	scaffold_7:11452741-11453306(-) (11)	NA	NA	NA	AT3G50630.1	KIP-related protein 2 	NA	NA	Medtr5g017600.1	Cyclin-dependent kinase inhibitor 	GO:0007050|cell cycle arrest	GO:0004861|cyclin-dependent protein kinase inhibitor activity	GO:0005634|nucleus
PtpAffx.56141.1.A1_at	A	A1TA	POPTR_0018s12950	POPTR_0018s12950 (10)	scaffold_18:13415854-13416756(+) (10)	NA	Q07488	Blue copper protein	AT5G20230.1	blue-copper-binding protein 	LOC_Os04g46130.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.56157.1.A1_at	A	A1TS	POPTR_0017s12730	POPTR_0017s12730 (9)	scaffold_17:12901740-12902277(-) (9)	NA	NA	NA	AT5G61190.1	putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain 	LOC_Os10g17740.1	"ZOS10-02 - C2H2 zinc finger protein, expressed"	Medtr5g105650.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56167.2.A1_a_at	A	A1TS	POPTR_0010s12600	POPTR_0010s12600 (11)	scaffold_10:12587320-12587473(-) (11)	NA	Q9ZU40	Sulfhydryl oxidase 2	AT2G01270.1	quiescin-sulfhydryl oxidase 2 	LOC_Os05g47930.3	"OsQSOXL1  quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed"	Medtr1g137690.1	Erv1/Alr; Thioredoxin fold 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016972|thiol oxidase activity	NA
PtpAffx.56171.1.S1_a_at	A	A3TS	POPTR_0018s05910	POPTR_0018s05910 (11)//POPTR_0018s05960 (9)//POPTR_1811s00200 (9)	scaffold_18:5539881-5540319(+) (11)//scaffold_18:5562558-5562994(+) (11)//scaffold_18:5591886-5592327(+) (11)//scaffold_1811:4797-5009(+) (9)	NA	NA	NA	AT3G22440.1	FRIGIDA-like protein 	LOC_Os07g07680.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56181.1.S1_s_at	A	A1TS	POPTR_0006s13660	POPTR_0006s13660 (11)	scaffold_6:10882981-10883901(+) (11)//scaffold_874:1083-2006(+) (10)	POPTR_0874s00200 (8)	Q9LSM5	Protein SGT1 homolog At5g65490	AT5G65490.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g34740.1	"SGT1 protein, putative, expressed"	AC233845_5.1	SGT1 AC233845.2 7966-12121 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56188.1.A1_at	A	A1TS	POPTR_0010s15700	POPTR_0010s15700 (10)	scaffold_10:14832955-14833133(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5619.1.S1_at	A	A1MS	POPTR_0008s05830	POPTR_0008s05830 (10)	scaffold_8:3405143-3405525(-) (10)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT2G39720.1	RING-H2 finger C2A 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56195.1.A1_at	A	A1TS	POPTR_0009s07990	POPTR_0009s07990 (11)	scaffold_9:7412185-7412488(+) (11)	NA	NA	NA	AT1G07090.1	Protein of unknown function (DUF640) 	LOC_Os05g39500.1	"DUF640 domain containing protein, putative, expressed"	Medtr5g080780.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56207.1.A1_at	A	A1TS	POPTR_0005s24880	POPTR_0005s24880 (11)	scaffold_5:23299854-23300057(+) (11)	NA	Q06190	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha	AT5G44090.1	Calcium-binding EF-hand family protein 	LOC_Os10g33680.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed"	Medtr1g093540.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5622.2.S1_s_at	A	A1TS	POPTR_0007s14670	POPTR_0007s14670 (11)	scaffold_7:14434260-14434983(-) (11)	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.5623.1.S1_at	A	A1TS	POPTR_0006s24900	POPTR_0006s24900 (11)	scaffold_6:23415044-23415307(+) (11)	NA	P49043	Vacuolar-processing enzyme	AT4G32940.1	gamma vacuolar processing enzyme 	LOC_Os01g37910.3	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr3g140280.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.5624.1.A1_at	A	A1TS	POPTR_0014s10150	POPTR_0014s10150 (11)	scaffold_14:7612123-7612260(-) (11)	NA	Q8LDU5	"Pentatricopeptide repeat-containing protein At4g01400, mitochondrial"	AT4G01400.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink). 	LOC_Os09g36230.1	PPR repeat containing protein	Medtr7g146110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5625.2.A1_a_at	A	A1TS	POPTR_0010s20340	POPTR_0010s20340 (11)	scaffold_10:17985900-17986479(+) (11)	NA	NA	NA	AT5G05950.1	maternal effect embryo arrest 60 	LOC_Os07g13600.1	expressed protein	Medtr3g092580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56251.1.A1_at	A	A1TS	POPTR_0013s08000	POPTR_0013s08000 (9)	scaffold_13:6919035-6919338(+) (9)	NA	P59278	Uncharacterized protein At1g51745	AT3G03140.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os02g47170.1	expressed protein	Medtr4g106850.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56254.1.A1_at	A	A1TS	POPTR_0004s15130	POPTR_0004s15130 (11)	scaffold_4:15801316-15801552(+) (11)	NA	Q8CBG9	RING finger protein 170	AT4G33940.1	RING/U-box superfamily protein 	LOC_Os03g62250.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g013260.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56254.1.A1_s_at	A	A1TS	POPTR_0004s15130	POPTR_0004s15130 (11)	scaffold_4:15800818-15801325(+) (11)	NA	Q8CBG9	RING finger protein 170	AT4G33940.1	RING/U-box superfamily protein 	LOC_Os03g62250.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g013260.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5626.1.A1_a_at	A	A2TS	POPTR_0002s09130	POPTR_0005s16400 (11)//POPTR_0002s09130 (11)	scaffold_2:6463845-6463905(-) (11)//scaffold_5:13118596-13118656(-) (11)	NA	Q93ZE2	Transcription factor TGA7	AT1G77920.1	bZIP transcription factor family protein 	LOC_Os04g54474.3	"transcription factor, putative, expressed"	Medtr3g100900.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.5626.1.A1_at	A	A1TS	POPTR_0005s16400	POPTR_0005s16400 (11)	scaffold_5:13117876-13118546(-) (11)	NA	Q93ZE2	Transcription factor TGA7	AT1G77920.1	bZIP transcription factor family protein 	LOC_Os04g54474.3	"transcription factor, putative, expressed"	Medtr3g100900.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.5626.3.S1_a_at	A	A1TS	POPTR_0002s09130	POPTR_0002s09130 (11)	scaffold_2:6468043-6468111(-) (11)	NA	Q93ZE2	Transcription factor TGA7	AT1G77920.1	bZIP transcription factor family protein 	LOC_Os04g54474.3	"transcription factor, putative, expressed"	Medtr3g100900.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.5626.3.S1_at	A	A1TS	POPTR_0002s09130	POPTR_0002s09130 (10)	scaffold_2:6468213-6468487(-) (10)	NA	Q93ZE2	Transcription factor TGA7	AT1G77920.1	bZIP transcription factor family protein 	LOC_Os04g54474.3	"transcription factor, putative, expressed"	Medtr3g100900.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.5626.4.S1_a_at	A	A1TS	POPTR_0002s09130	POPTR_0002s09130 (11)	scaffold_2:6463130-6464470(-) (11)	NA	Q93ZE2	Transcription factor TGA7	AT1G77920.1	bZIP transcription factor family protein 	LOC_Os04g54474.3	"transcription factor, putative, expressed"	Medtr3g100900.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.56261.1.A1_at	A	A1TS	POPTR_0003s01350	POPTR_0003s01350 (11)	scaffold_3:1188261-1189212(+) (11)	NA	Q8RY89	Phosphatidylinositol-4-phosphate 5-kinase 8	AT1G60890.1	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os03g49510.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g137550.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.56271.1.A1_a_at	A	A1TS	POPTR_0016s02890	POPTR_0016s02890 (11)	scaffold_16:1424788-1425644(-) (11)	NA	NA	NA	AT3G56590.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g71220.1	"zinc finger protein, putative, expressed"	Medtr7g105620.1	"Putative RING zinc finger protein-, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56274.1.S1_at	A	A1MS	POPTR_0014s01360	POPTR_0014s01360 (11)	scaffold_14:1336598-1336940(+) (11)	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	LOC_Os01g34780.2	"protein binding protein, putative, expressed"	Medtr4g101290.1	FF 	NA	GO:0005515|protein binding	NA
PtpAffx.56277.1.A1_at	A	A1TS	POPTR_0016s14600	POPTR_0016s14600 (11)	scaffold_16:13779547-13779585(+) (11)	NA	Q6C4X5	UDP-galactose transporter homolog 1	AT1G14360.1	UDP-galactose transporter 3 	LOC_Os06g39260.1	"solute carrier family 35 member B1, putative, expressed"	Medtr5g039930.1	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5628.1.A1_at	A	A1TS	POPTR_0001s06680	POPTR_0001s06680 (11)	scaffold_1:5110747-5111059(-) (11)	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT5G13530.1	protein kinases;ubiquitin-protein ligases 	LOC_Os05g32570.1	"RING E3 ligase protein, putative, expressed"	Medtr3g005700.1	"Protein kinase; NADH dehydrogenase (ubiquinone), chloroplast chain 5, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.56280.1.A1_s_at	A	A1TS	POPTR_0009s00660	POPTR_0009s00660 (11)	scaffold_9:744678-745302(+) (11)	NA	Q9SJK3	Argonaute-like protein At2g27880	AT2G27880.1	Argonaute family protein 	LOC_Os03g58600.1	"PAZ domain containing protein, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56296.1.A1_at	A	A1TS	POPTR_0005s14870	POPTR_0005s14870 (9)	scaffold_5:11773389-11773771(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5630.1.S1_at	A	A1TS	POPTR_0012s13010	POPTR_0012s13010 (10)	scaffold_12:13329637-13330232(-) (10)	NA	NA	NA	AT4G25610.1	C2H2-like zinc finger protein 	LOC_Os09g39660.2	"ZOS9-21 - C2H2 zinc finger protein, expressed"	Medtr1g126780.1	hypothetical protein 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.5630.2.A1_at	A	A1TS	POPTR_0015s12910	POPTR_0015s12910 (11)	scaffold_15:13079130-13079521(-) (11)	NA	NA	NA	AT4G25610.1	C2H2-like zinc finger protein 	LOC_Os09g39660.2	"ZOS9-21 - C2H2 zinc finger protein, expressed"	Medtr1g126780.1	hypothetical protein 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.56318.1.A1_at	A	A1TS	POPTR_0016s07800	POPTR_0016s07800 (10)	scaffold_16:5617353-5617539(+) (10)	NA	NA	NA	AT3G52570.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g64262.2	"hydrolase, alpha/beta fold family, putative, expressed"	Medtr5g008770.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56318.1.A1_s_at	A	A2TS	POPTR_0016s07760	POPTR_0016s07760 (11)//POPTR_0016s07800 (11)	scaffold_16:5592066-5592320(-) (11)//scaffold_16:5617177-5617431(+) (11)	NA	NA	NA	AT3G52570.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g64262.2	"hydrolase, alpha/beta fold family, putative, expressed"	Medtr5g008770.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56319.1.A1_at	A	A1TS	POPTR_0010s02180	POPTR_0010s02180 (11)	scaffold_10:2492736-2493277(+) (11)	NA	Q8RWY3	Putative chromatin-remodeling complex ATPase chain	AT5G18620.2	chromatin remodeling factor17 	LOC_Os01g27040.1	"chromatin-remodeling complex ATPase chain, putative, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	GO:0043044|ATP-dependent chromatin remodeling	GO:0031491|nucleosome binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0016585|chromatin remodeling complex
PtpAffx.56321.1.A1_at	A	A1TS	POPTR_0006s27200	POPTR_0006s27200 (10)	scaffold_6:25187127-25187489(+) (10)	NA	Q42563	Adenine phosphoribosyltransferase 2	AT5G11160.1	adenine phosphoribosyltransferase 5 	LOC_Os04g42520.1	"phosphoribosyl transferase, putative, expressed"	Medtr3g137510.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.56323.1.A1_at	A	A1TS	POPTR_0006s01540	POPTR_0006s01540 (9)	scaffold_6:933962-934199(+) (9)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.56333.1.A1_at	A	A1TS	POPTR_0008s01390	POPTR_0008s01390 (10)	scaffold_8:674621-674761(+) (10)	NA	Q5IH13	Sucrose-phosphatase 2	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os01g27880.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.56333.1.A1_s_at	A	A1TS	POPTR_0008s01390	POPTR_0008s01390 (11)	scaffold_8:673921-674561(+) (11)	NA	Q5IH13	Sucrose-phosphatase 2	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os01g27880.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.5634.1.A1_at	A	A1TS	POPTR_0006s23760	POPTR_0006s23760 (11)	scaffold_6:22472452-22472710(-) (11)	NA	Q9FUJ1	Cytokinin dehydrogenase 7	AT5G21482.1	cytokinin oxidase 7 	LOC_Os08g35860.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr1g019530.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
PtpAffx.56360.1.A1_at	A	A1TS	POPTR_0017s06620	POPTR_0017s06620 (9)	scaffold_17:5031060-5031092(+) (9)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56386.1.A1_at	A	A1TS	POPTR_0007s15040	POPTR_0007s15040 (11)	scaffold_7:14690953-14691588(+) (11)	NA	NA	NA	AT3G13000.1	"Protein of unknown function, DUF547 "	LOC_Os06g49060.1	"ternary complex factor MIP1, putative, expressed"	AC233653_9.1	Protein of unknown function DUF547 AC233653.2 46326-50755 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5640.1.A1_at	A	A1TS	POPTR_0018s04910	POPTR_0018s04910 (11)	scaffold_18:4344449-4345594(+) (11)	NA	NA	NA	AT2G06005.1	FRIGIDA interacting protein 1 	LOC_Os02g53780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56442.1.A1_at	A	A1TS	POPTR_0009s07380	POPTR_0009s07380 (10)	scaffold_9:6893905-6894410(-) (10)	NA	Q9SUD8	Pentatricopeptide repeat-containing protein At4g28010	AT4G28010.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g42880.1	"PPR repeat containing protein, expressed"	Medtr3g024680.1	Chaperonin Cpn60/TCP-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56447.1.A1_at	A	A1TS	POPTR_0014s17620	POPTR_0014s17620 (9)	scaffold_14:13882449-13882566(-) (9)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56447.1.A1_s_at	A	A1TS	POPTR_0014s17620	POPTR_0014s17620 (11)	scaffold_14:13882566-13882728(-) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5645.1.A1_at	A	A1TS	POPTR_0009s12620	POPTR_0009s12620 (11)	scaffold_9:10273597-10274040(+) (11)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os01g54210.1	"GATA zinc finger domain containing protein, expressed"	Medtr4g097100.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.56451.1.A1_at	A	A1TS	POPTR_0002s01810	POPTR_0002s01810 (10)	scaffold_2:967558-968112(+) (11)	NA	NA	NA	AT1G76060.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os03g04380.1	"LYR motif containing protein, putative, expressed"	Medtr1g031940.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5646.1.A1_at	A	A1MS	POPTR_0004s20140	POPTR_0004s20140 (11)	scaffold_4:19790162-19790401(+) (11)	NA	Q9FYC7	Putative phospholipid:diacylglycerol acyltransferase 2	AT3G44830.1	Lecithin:cholesterol acyltransferase family protein 	LOC_Os09g27210.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr6g044030.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
PtpAffx.56469.1.S1_at	A	A1TS	POPTR_0005s13350	POPTR_0005s13350 (11)	scaffold_5:10511553-10512039(+) (11)	POPTR_0017s12950 (7)	Q9VSJ8	Exocyst complex component 7	AT3G29400.1	exocyst subunit exo70 family protein E1 	LOC_Os01g55799.3	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr3g036640.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.5647.1.A1_at	A	A1MS	POPTR_0001s45550	POPTR_0001s45550 (9)	scaffold_1:46050666-46051198(-) (11)	NA	Q9ZWQ9	Flavonol synthase/flavanone 3-hydroxylase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.56476.2.A1_a_at	A	A1TS	POPTR_0013s12910	POPTR_0013s12910 (10)	scaffold_13:13525938-13527446(-) (11)	NA	NA	NA	AT2G30695.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os09g34000.1	expressed protein	Medtr3g010500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5648.1.A1_at	A	A1TS	POPTR_0002s18530	POPTR_0002s18530 (11)	scaffold_2:14422952-14423072(-) (11)	NA	Q8L5J1	"Mannan endo-1,4-beta-mannosidase 4"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr1g103540.1	"Mannan endo-1,4-beta-mannosidase 4 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56491.1.S1_at	A	A1TS	POPTR_0001s11000	POPTR_0001s11000 (11)	scaffold_1:8525900-8526419(-) (11)	NA	Q9LIR6	"Beta-amylase 1, chloroplastic"	AT3G23920.1	beta-amylase 1 	LOC_Os01g13550.1	"beta-amylase, putative, expressed"	Medtr5g013790.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.5651.1.S1_a_at	A	A1TS	POPTR_0004s05700	POPTR_0004s05700 (11)	scaffold_11:7984206-7984339(+) (11)//scaffold_4:4469077-4469210(-) (11)	NA	Q9SN43	CBL-interacting serine/threonine-protein kinase 12	AT4G18700.1	CBL-interacting protein kinase 12 	LOC_Os05g43840.1	"CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5651.1.S1_at	A	A1MS	POPTR_0011s07230	POPTR_0011s07230 (11)	scaffold_11:7984244-7984722(+) (11)	NA	Q9SN43	CBL-interacting serine/threonine-protein kinase 12	AT4G18700.1	CBL-interacting protein kinase 12 	LOC_Os05g43840.1	"CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5651.2.S1_a_at	A	A1TS	POPTR_0004s05700	POPTR_0004s05700 (11)	scaffold_4:4468823-4469179(-) (11)	NA	Q9SN43	CBL-interacting serine/threonine-protein kinase 12	AT4G18700.1	CBL-interacting protein kinase 12 	LOC_Os05g43840.1	"CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.56518.1.A1_at	A	A1TS	POPTR_0008s02680	POPTR_0008s02680 (9)	scaffold_8:1356004-1356440(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT1G08230.2	Transmembrane amino acid transporter family protein 	LOC_Os01g63854.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56519.1.A1_at	A	A1TS	POPTR_0002s20770	POPTR_0002s20770 (9)	scaffold_2:16868447-16868546(+) (9)	NA	Q9FDW0	Protein FRIGIDA	AT5G16320.1	FRIGIDA like 1 	LOC_Os09g07360.1	"frigida, putative, expressed"	Medtr3g077030.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56519.1.A1_s_at	A	A1TS	POPTR_0002s20770	POPTR_0002s20770 (11)	scaffold_2:16868252-16868453(+) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G16320.1	FRIGIDA like 1 	LOC_Os09g07360.1	"frigida, putative, expressed"	Medtr3g077030.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56522.1.A1_at	A	A1TS	POPTR_0016s08510	POPTR_0016s08510 (10)	scaffold_16:6322425-6322968(+) (11)	NA	NA	NA	AT5G02850.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g36890.2	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr8g089890.1	"hydroxyproline-rich glycoprotein family protein, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.5654.1.A1_at	A	A2TS	POPTR_0846s00200	POPTR_0846s00200 (11)//POPTR_0019s05000 (10)	scaffold_19:5218285-5218796(-) (10)//scaffold_846:1552-2070(+) (11)	NA	Q9FK51	Probable galactose-1-phosphate uridyl transferase	AT5G18200.1	UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases 	LOC_Os07g07550.1	"galactose-1-phosphate uridyl transferase, putative, expressed"	Medtr6g030890.1	"Galactose-1-phosphate uridyl transferase, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56549.1.A1_at	A	A1TS	POPTR_0007s09870	POPTR_0007s09870 (11)	scaffold_7:9392139-9392488(-) (11)	NA	Q9FJX6	Formin-like protein 6	AT5G67470.1	formin homolog 6 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr5g015760.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56562.1.A1_at	A	A1TS	POPTR_0009s02520	POPTR_0009s02520 (11)	scaffold_9:3261694-3261983(-) (11)	NA	Q0WPH8	Serine/threonine-protein kinase Nek5	AT3G44200.1	"NIMA (never in mitosis, gene A)-related 6 "	LOC_Os01g64490.1	"protein kinase domain containing protein, expressed"	Medtr2g105340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.5657.1.S1_at	A	A1TS	POPTR_0012s01740	POPTR_0012s01740 (11)	scaffold_12:1321644-1322668(-) (11)	NA	Q5SN75	Probable protein phosphatase 2C 8	AT1G07430.1	highly ABA-induced PP2C gene 2 	LOC_Os01g46760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g009410.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56570.1.A1_at	A	A1TS	POPTR_0015s07400	POPTR_0015s07400 (10)	scaffold_15:8596100-8596498(+) (10)	NA	P53997	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.56577.1.A1_at	A	A1TS	POPTR_0001s34840	POPTR_0001s34840 (11)	scaffold_1:33072694-33073665(+) (11)	NA	NA	NA	AT1G74860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits to 193 proteins in 61 species: Archae - 0; Bacteria - 9; Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other Eukaryotes - 49 (source: NCBI BLink). 	LOC_Os02g37020.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56582.1.A1_s_at	A	A1TS	POPTR_0030s00440	POPTR_0030s00440 (11)	scaffold_30:188076-188390(+) (11)	NA	Q9M081	Protein transport protein Sec24-like At4g32640	AT4G32640.2	Sec23/Sec24 protein transport family protein 	LOC_Os11g29200.1	"protein transport protein, putative, expressed"	AC235094_10.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region AC235094.1 49157-53293 E EGN_Mt090430 200"	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.56585.1.S1_at	A	A1TS	POPTR_0005s18160	POPTR_0005s18160 (10)	scaffold_5:16262435-16262578(-) (10)	NA	O81360	"Zeaxanthin epoxidase, chloroplastic"	AT5G67030.1	zeaxanthin epoxidase (ZEP) (ABA1) 	LOC_Os04g37619.1	"zeaxanthin epoxidase, chloroplast precursor, putative, expressed"	CU571152_22.1	Forkhead-associated CU571152.5 100554-94827 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56593.1.A1_at	A	A1TS	POPTR_0002s07430	POPTR_0002s07430 (11)	scaffold_2:5075295-5075480(-) (11)	NA	Q9SDQ3	Scarecrow-like protein 1	AT1G21450.1	SCARECROW-like 1 	LOC_Os01g65900.1	"chitin-inducible gibberellin-responsive protein, putative, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56607.1.A1_s_at	A	A3TS	POPTR_0012s02000	POPTR_0012s02000 (11)//POPTR_0015s01920 (11)//POPTR_0146s00200 (11)	scaffold_12:1605690-1606272(+) (11)//scaffold_146:2906-3479(-) (11)//scaffold_15:1323553-1324154(-) (11)	NA	Q12874	Splicing factor 3A subunit 3	AT5G06160.1	splicing factor-related 	LOC_Os03g50850.1	"ZOS3-17 - C2H2 zinc finger protein, expressed"	Medtr3g124240.1	"Zinc finger, C2H2-type matrin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5661.1.A1_x_at	A	A1TS	POPTR_0012s02730	POPTR_0012s02730 (11)	scaffold_12:2243425-2244478(-) (11)	NA	Q6N075	Major facilitator superfamily domain-containing protein 5	AT4G27720.1	Major facilitator superfamily protein 	LOC_Os10g37520.2	"major facilitator superfamily domain-containing protein 5, putative, expressed"	Medtr3g123410.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5661.1.A2_a_at	A	A1TS	POPTR_0003s13850	POPTR_0003s13850 (11)	scaffold_3:14102097-14102607(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5661.2.S1_s_at	A	A1TS	POPTR_0015s01050	POPTR_0015s01050 (9)	scaffold_15:615870-616396(+) (9)	NA	Q6N075	Major facilitator superfamily domain-containing protein 5	AT4G27720.1	Major facilitator superfamily protein 	LOC_Os10g37520.2	"major facilitator superfamily domain-containing protein 5, putative, expressed"	Medtr3g123410.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5661.4.A1_a_at	A	A1TS	POPTR_0012s02730	POPTR_0012s02730 (11)	scaffold_12:2244038-2244607(-) (11)	NA	Q6N075	Major facilitator superfamily domain-containing protein 5	AT4G27720.1	Major facilitator superfamily protein 	LOC_Os10g37520.2	"major facilitator superfamily domain-containing protein 5, putative, expressed"	Medtr3g123410.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56610.1.A1_at	A	A1MA	POPTR_0012s08890	POPTR_0012s08890 (9)	scaffold_12:9942787-9949839(+) (10)	NA	Q9LMB9	Cysteine-rich receptor-like protein kinase 1	AT5G40380.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 42 	LOC_Os05g03920.1	"TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g035020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.56615.1.A1_at	A	A1TS	POPTR_0002s09020	POPTR_0002s09020 (11)	scaffold_2:6384409-6384637(-) (11)	NA	NA	NA	AT1G36940.1	unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56615.1.A1_s_at	A	A1TS	POPTR_0002s09020	POPTR_0002s09020 (11)	scaffold_2:6384642-6384922(-) (11)	NA	NA	NA	AT1G36940.1	unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56616.1.S1_at	A	A1TS	POPTR_0009s05210	POPTR_0009s05210 (11)	scaffold_9:5351843-5352350(-) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT1G34470.1	Protein of unknown function (DUF803) 	LOC_Os05g43790.1	"DUF803 domain containing, putative, expressed"	Medtr5g097050.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.56617.1.A1_at	A	A1TS	POPTR_0006s17960	POPTR_0006s17960 (10)	scaffold_6:16248167-16248769(-) (10)	NA	Q03194	Plasma membrane ATPase 4	AT4G30190.1	H(+)-ATPase 2 	LOC_Os04g56160.3	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.5662.1.S1_a_at	A	A1MS	POPTR_0010s10990	POPTR_0010s10990 (11)	scaffold_10:11389918-11390046(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G14600.1	Homeodomain-like superfamily protein 	LOC_Os03g03760.1	"MYB family transcription factor, putative, expressed"	Medtr1g039660.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5662.2.S1_at	A	A1MS	POPTR_0010s10990	POPTR_0010s10990 (11)	scaffold_10:11389661-11389932(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G14600.1	Homeodomain-like superfamily protein 	LOC_Os03g03760.1	"MYB family transcription factor, putative, expressed"	Medtr1g039660.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56621.1.A1_at	A	A1MS	POPTR_0001s34370	POPTR_0001s34370 (11)	scaffold_1:32522434-32522486(-) (11)	NA	P49211	60S ribosomal protein L32-1	AT4G18100.1	Ribosomal protein L32e 	LOC_Os09g32532.2	"60S ribosomal protein L32, putative, expressed"	Medtr4g134080.1	Ribosomal protein L32e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.56622.1.A1_at	A	A1TS	POPTR_0006s07490	POPTR_0006s07490 (11)	scaffold_6:5419526-5419944(+) (11)	NA	Q9LU68	Protein CHLOROPLAST IMPORT APPARATUS 2	AT5G57180.2	chloroplast import apparatus 2 	LOC_Os02g05470.1	"CCT motif family protein, expressed"	Medtr8g129690.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56623.1.A1_at	A	A1TS	POPTR_0005s06110	POPTR_0005s06110 (10)	scaffold_5:4019771-4020727(+) (10)	NA	O19922	ATP-dependent zinc metalloprotease FtsH	AT5G64580.1	AAA-type ATPase family protein 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr3g143610.1	"Flagellar basal body rod protein; AAA ATPase, central region; Peptidase M41, FtsH extracellular "	NA	GO:0005524|ATP binding	NA
PtpAffx.56628.1.A1_at	A	A1TS	POPTR_0004s07480	POPTR_0004s07480 (10)	scaffold_4:6170462-6171118(+) (10)	NA	O62703	Beta-catenin-like protein 1	AT3G02710.1	ARM repeat superfamily protein 	LOC_Os02g58460.1	"beta-catenin-like protein 1, putative, expressed"	Medtr3g086360.1	"Protein of unknown function DUF1716, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56630.1.A1_at	A	A1TS	POPTR_0011s13620	POPTR_0011s13620 (11)	scaffold_11:16330861-16330897(+) (11)	NA	A2RSJ4	UHRF1-binding protein 1-like	AT3G20720.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os04g53670.1	expressed protein	Medtr4g111120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56630.1.A1_s_at	A	A1TS	POPTR_0011s13620	POPTR_0011s13620 (11)	scaffold_11:16330884-16332566(+) (11)	NA	A2RSJ4	UHRF1-binding protein 1-like	AT3G20720.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os04g53670.1	expressed protein	Medtr4g111120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56649.1.A1_at	A	A1MS	POPTR_0001s09830	POPTR_0001s09830 (11)	scaffold_1:7585109-7585392(+) (11)	NA	P92947	"Monodehydroascorbate reductase, chloroplastic"	AT1G63940.2	monodehydroascorbate reductase 6 	LOC_Os08g05570.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.5665.1.A1_at	A	A1TS	POPTR_0001s13790	POPTR_0001s13790 (11)	scaffold_1:10859969-10860463(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.5665.2.S1_a_at	A	A2TS	POPTR_0001s13790	POPTR_0001s13790 (11)//POPTR_0003s17000 (11)	scaffold_1:10860450-10860621(-) (11)//scaffold_3:16489436-16489607(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.56650.1.A1_s_at	A	A1TS	POPTR_0005s18740	POPTR_0005s18740 (11)	scaffold_5:17026657-17027160(+) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT5G36220.1	cytochrome p450 81d1 	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.56651.1.A1_at	A	A2TS	POPTR_0005s22300	POPTR_0005s22300 (11)//POPTR_1065s00210 (9)	scaffold_1065:14-6630(-) (9)//scaffold_1795:3919-4431(-) (9)//scaffold_5:21272220-21272820(+) (11)	POPTR_1795s00200 (7)//POPTR_1065s00200 (6)	Q38911	Probable xyloglucan endotransglucosylase/hydrolase protein 15	AT4G14130.1	xyloglucan endotransglucosylase/hydrolase 15 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr3g104520.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.56662.1.A1_at	A	A1MS	POPTR_0010s05690	POPTR_0010s05690 (11)	scaffold_10:7175407-7175629(-) (11)	NA	Q5KS50	Coleoptile phototropism protein 1	AT1G67900.3	Phototropic-responsive NPH3 family protein 	LOC_Os02g38120.1	"BTBN3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr5g034190.1	NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.56667.1.S1_at	A	A1TS	POPTR_0005s24520	POPTR_0005s24520 (11)	scaffold_5:23050844-23052721(-) (11)	NA	Q9ZSK2	Actin-depolymerizing factor 6	AT2G31200.1	actin depolymerizing factor 6 	LOC_Os12g43340.1	"actin-depolymerizing factor, putative, expressed"	AC233662_56.1	"Actin-binding, cofilin/tropomyosin type AC233662.1 257418-259371 F EGN_Mt090430 200"	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.56677.1.A1_at	A	A1TS	POPTR_0015s09130	POPTR_0015s09130 (11)	scaffold_15:10438019-10440668(-) (11)	NA	Q9SB63	Protein MODIFIER OF SNC1 1	AT4G24680.1	modifier of snc1 	LOC_Os12g37860.1	expressed protein	Medtr3g114390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5668.2.S1_a_at	A	A1TS	POPTR_0014s11980	POPTR_0014s11980 (11)	scaffold_14:8861072-8861395(+) (11)	NA	NA	NA	AT3G62650.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47485.1); Has 57 Blast hits to 57 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g29000.1	expressed protein	Medtr7g132640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56685.1.S1_at	A	A1TS	POPTR_0004s21920	POPTR_0004s21920 (11)	scaffold_4:20878019-20878409(+) (11)	NA	Q9SZL5	Pentatricopeptide repeat-containing protein At4g38150	AT4G38150.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g36600.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g019730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56690.1.A1_at	A	A1TS	POPTR_0003s19590	POPTR_0003s19590 (10)	scaffold_3:18270709-18271113(-) (10)	NA	Q6LL68	Beta-galactosidase	AT3G54440.1	glycoside hydrolase family 2 protein 	LOC_Os01g72340.1	"beta-galactosidase, putative, expressed"	Medtr8g042760.1	"Glycoside hydrolase, family 42, domain 5, loop region; Glycoside hydrolase family 2, sugar binding; Galactose mutarotase-like; ; "	GO:0005975|carbohydrate metabolic process	GO:0004565|beta-galactosidase activity	GO:0009341|beta-galactosidase complex
PtpAffx.56693.1.S1_at	A	A1TS	POPTR_0017s06970	POPTR_0017s06970 (11)	scaffold_17:5423315-5423647(-) (11)	NA	Q8GXL7	GATA transcription factor 24	AT3G21175.2	ZIM-like 1 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr4g121420.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.56694.1.A1_at	A	A1TS	POPTR_0001s08870	POPTR_0001s08870 (11)	scaffold_1:6775292-6776397(+) (11)	NA	Q8K358	Phosphatidylinositol glycan anchor biosynthesis class U protein	AT1G63110.1	GPI transamidase subunit PIG-U 	LOC_Os02g46350.1	"GPI transamidase subunit PIG-U domain containing protein, expressed"	NA	NA	GO:0006506|GPI anchor biosynthetic process	NA	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.56704.1.A1_at	A	A1TS	POPTR_0006s15670	POPTR_0006s15670 (11)	scaffold_6:13139575-13139832(-) (11)	NA	Q84WU9	Zinc finger CCCH domain-containing protein 64	AT5G56900.2	CwfJ-like family protein / zinc finger (CCCH-type) family protein 	LOC_Os09g19940.1	"cwfJ-like family protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.5671.3.A1_a_at	A	A1TS	POPTR_0001s34990	POPTR_0001s34990 (11)	scaffold_1:33280493-33280831(-) (11)	NA	NA	NA	AT5G14540.1	Protein of unknown function (DUF1421) 	LOC_Os01g07520.1	"proline-rich family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5671.4.A1_a_at	A	A1TS	POPTR_0017s01160	POPTR_0017s01160 (11)	scaffold_17:832711-833122(-) (11)	NA	P51819	Heat shock protein 83	AT5G52640.1	heat shock protein 90.1 	LOC_Os04g01740.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.5671.5.S1_a_at	A	A1TS	POPTR_0001s34990	POPTR_0001s34990 (11)	scaffold_1:33281045-33281160(-) (11)	NA	NA	NA	AT5G14540.1	Protein of unknown function (DUF1421) 	LOC_Os01g07520.1	"proline-rich family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56712.1.A1_at	A	A1TS	POPTR_0018s00710	POPTR_0018s00710 (11)	scaffold_18:624093-625486(-) (11)	NA	Q9S7G7	Myb-related protein 3R-1	AT4G32730.2	Homeodomain-like protein 	LOC_Os01g12860.1	"MYB family transcription factor, putative, expressed"	AC225518_14.1	Homeodomain-like; AC225518.12 45180-39703 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56715.1.A1_at	A	A1TS	POPTR_0014s17740	POPTR_0014s17740 (11)	scaffold_14:14006231-14006359(-) (11)	NA	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT5G46570.1	BR-signaling kinase 2 	LOC_Os10g42110.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.56717.1.A1_s_at	A	A1TS	POPTR_0009s05330	POPTR_0009s05330 (11)	scaffold_9:5459532-5459830(+) (11)	NA	Q9LPR8	Scarecrow-like protein 3	AT1G50420.1	scarecrow-like 3 	LOC_Os01g71970.1	"GRAS family transcription factor containing protein, expressed"	Medtr5g009100.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56718.1.A1_at	A	A1TS	POPTR_0008s15330	POPTR_0008s15330 (11)	scaffold_8:10216694-10217107(-) (11)	NA	NA	NA	AT4G14870.1	secE/sec61-gamma protein transport protein 	LOC_Os08g30830.1	"transposon protein, putative, unclassified"	Medtr5g039540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56721.1.A1_at	A	A1TS	POPTR_0011s05390	POPTR_0011s05390 (11)	scaffold_11:5310587-5311716(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5673.1.S1_a_at	A	A1TS	POPTR_0001s38100	POPTR_0001s38100 (11)	scaffold_1:37155483-37155947(+) (11)	NA	Q84JP1	Nuclear transcription factor Y subunit A-7	AT1G30500.2	"nuclear factor Y, subunit A7 "	LOC_Os12g41880.2	"nuclear transcription factor Y subunit, putative, expressed"	Medtr2g129630.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.56733.1.A1_s_at	A	A1TS	POPTR_0007s13890	POPTR_0007s13890 (11)	scaffold_7:13894207-13896110(-) (11)	NA	P59228	V-type proton ATPase 16 kDa proteolipid subunit c2	AT1G19910.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os02g34510.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.56736.1.A1_at	A	A1TS	POPTR_0008s14390	POPTR_0008s14390 (11)	scaffold_8:9541361-9541892(-) (11)	NA	Q9ZVR7	Phytosulfokine receptor 1	AT2G02220.1	phytosulfokin receptor 1 	LOC_Os02g41890.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.56737.1.A1_at	A	A1TS	POPTR_0013s04640	POPTR_0013s04640 (11)	scaffold_13:3196413-3196906(+) (11)	NA	Q54MZ3	Anaphase-promoting complex subunit cdc20	AT4G33270.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g47180.2	"WD repeat-containing protein, putative, expressed"	Medtr5g008110.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56737.2.A1_a_at	A	A2TS	POPTR_0013s04640	POPTR_0013s04640 (11)//POPTR_0019s03850 (11)	scaffold_13:3196244-3196420(+) (11)//scaffold_19:3904032-3904202(+) (11)	POPTR_0016s12590 (8)	Q54MZ3	Anaphase-promoting complex subunit cdc20	AT4G33270.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g47180.2	"WD repeat-containing protein, putative, expressed"	Medtr5g008110.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56737.2.A1_at	A	A2TS	POPTR_0019s03850	POPTR_0019s03850 (11)//POPTR_0013s04640 (10)	scaffold_13:3195994-3196401(+) (10)//scaffold_19:3903782-3904262(+) (11)	NA	Q54MZ3	Anaphase-promoting complex subunit cdc20	AT4G33270.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g47180.2	"WD repeat-containing protein, putative, expressed"	Medtr5g008110.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56743.1.A1_at	A	A1TS	POPTR_0017s08910	POPTR_0017s08910 (11)	scaffold_17:7551415-7551931(-) (11)	NA	B9RH17	UPF0497 membrane protein 13	AT4G25040.1	Uncharacterised protein family (UPF0497) 	LOC_Os02g12760.1	"integral membrane protein, putative, expressed"	Medtr7g094340.2	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56747.1.A1_at	A	A1MS	POPTR_0013s07620	POPTR_0013s07620 (11)	scaffold_13:6452883-6453368(-) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT4G27600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os10g42240.1	"kinase, pfkB family, putative, expressed"	Medtr4g107860.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56748.1.A1_at	A	A1MS	POPTR_0002s21490	POPTR_0002s21490 (11)	scaffold_2:17988881-17989394(-) (11)	NA	Q69KJ0	Ribonuclease 3-like protein 3	AT4G15417.1	RNAse II-like 1 	LOC_Os06g25250.1	"endoribonuclease Dicer, putative, expressed"	Medtr3g110470.1	"Ribonuclease III, bacterial "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.5675.2.S1_a_at	A	A3TS	POPTR_0008s19420	POPTR_0010s05070 (11)//POPTR_0008s19420 (11)//POPTR_0010s05020 (10)	scaffold_10:6328414-6328533(-) (10)//scaffold_10:6476923-6477659(-) (11)//scaffold_8:13362724-13363684(+) (11)	NA	O49453	Uncharacterized protein At4g28440	AT1G23750.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr5g035620.1	"nucleic acid binding, OB-fold, tRNA/helicase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5675.2.S1_at	A	A1TS	POPTR_0010s05070	POPTR_0010s05070 (11)	scaffold_10:6328087-6328551(-) (9)//scaffold_10:6476627-6477758(-) (11)	NA	O49453	Uncharacterized protein At4g28440	AT1G23750.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr5g035620.1	"nucleic acid binding, OB-fold, tRNA/helicase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56752.1.A1_at	A	A1MS	POPTR_0003s16290	POPTR_0003s16290 (11)	scaffold_3:15869479-15869689(-) (11)	NA	P44439	Probable poly(A) polymerase	AT1G28090.2	Polynucleotide adenylyltransferase family protein 	LOC_Os04g32490.2	"tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed"	Medtr4g152060.1	Polynucleotide adenylyltransferase region 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0016779|nucleotidyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.5676.1.A1_at	A	A1TS	POPTR_0005s09730	POPTR_0005s09730 (11)	scaffold_5:6822800-6823265(-) (11)	NA	Q9FMY1	Cytochrome P450 86B1	AT2G23180.1	"cytochrome P450, family 96, subfamily A, polypeptide 1 "	LOC_Os03g04650.1	"cytochrome P450 protein, putative, expressed"	Medtr4g137010.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.56762.1.S1_a_at	A	A2TS	POPTR_0004s12285	POPTR_0017s11480 (11)//POPTR_0004s12285 (11)	scaffold_17:11225248-11225649(-) (11)//scaffold_4:11375578-11375979(+) (11)	NA	NA	NA	AT3G28720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink). 	LOC_Os06g38550.1	expressed protein	Medtr5g019420.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56762.1.S1_at	A	A1TS	POPTR_0017s11480	POPTR_0017s11480 (11)	scaffold_17:11225220-11225623(-) (11)	NA	NA	NA	AT3G28720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink). 	LOC_Os06g38550.1	expressed protein	Medtr5g019420.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56762.2.A1_at	A	A1TS	POPTR_0004s12285	POPTR_0004s12285 (11)	scaffold_4:11375696-11376247(+) (11)	NA	NA	NA	AT3G28720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink). 	LOC_Os06g38550.1	expressed protein	Medtr5g019420.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56770.1.A1_s_at	A	A2TS	POPTR_0001s00210	POPTR_0016s10760 (11)//POPTR_0001s00210 (11)	scaffold_1:22329-22746(+) (11)//scaffold_16:9093133-9093550(+) (11)	NA	O04376	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	AT3G09880.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g47790.3	"transposon protein, putative, unclassified, expressed"	Medtr3g110300.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.5678.2.S1_a_at	A	A1TS	POPTR_0018s06520	POPTR_0018s06520 (11)	scaffold_18:6445343-6447197(+) (11)	NA	Q9MAT5	Probable protein arginine N-methyltransferase 4.2	AT1G04870.2	protein arginine methyltransferase 10 	LOC_Os06g05090.1	"methyltransferase domain containing protein, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.56787.1.S1_at	A	A1TS	POPTR_0019s07570	POPTR_0019s07570 (9)	scaffold_19:8624535-8624995(-) (9)	NA	NA	NA	AT2G40480.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr5g091420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56789.1.A1_at	A	A1TS	POPTR_0002s25490	POPTR_0002s25490 (11)	scaffold_2:22563723-22564279(-) (11)	NA	NA	NA	AT4G28760.2	Protein of unknown function (DUF3741) 	LOC_Os04g42770.5	expressed protein	Medtr7g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56812.1.A1_at	A	A1TS	POPTR_0008s17550	POPTR_0008s17550 (11)	scaffold_8:11823490-11824806(+) (11)	NA	Q6UPR8	Endoplasmic reticulum metallopeptidase 1	AT1G67420.2	Zn-dependent exopeptidases superfamily protein 	LOC_Os07g19530.1	"peptidase, putative, expressed"	Medtr1g120840.1	ArgE/dapE/ACY1/CPG2/yscS; Peptidase M28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.5682.1.S1_at	A	A1TS	POPTR_0012s07680	POPTR_0012s07680 (11)	scaffold_12:8594914-8595298(-) (11)	NA	P42347	"Phosphatidylinositol 3-kinase, root isoform"	AT1G60490.1	vacuolar protein sorting 34 	LOC_Os05g08810.1	"phosphatidylinositol 3-kinase, root isoform, putative, expressed"	Medtr5g035420.1	"Phosphoinositide 3-kinase, C2; Phosphatidylinositol 3-kinase, Vps34 type; "	GO:0048015|phosphoinositide-mediated signaling||GO:0046854|phosphoinositide phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0016303|1-phosphatidylinositol-3-kinase activity	GO:0005942|phosphoinositide 3-kinase complex
PtpAffx.56823.1.S1_at	A	A1TS	POPTR_0018s05390	POPTR_0018s05390 (11)	scaffold_18:4928949-4929649(+) (11)	NA	O94673	Uncharacterized membrane protein C776.05	AT5G35460.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g40280.1	"integral membrane protein, putative, expressed"	Medtr2g046410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5685.1.S1_a_at	A	A1TS	POPTR_0005s04680	POPTR_0005s04680 (11)	scaffold_5:3145234-3145410(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5685.1.S1_x_at	A	A1TS	POPTR_0005s04680	POPTR_0005s04680 (11)	scaffold_5:3145166-3146029(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5686.2.S1_a_at	A	A2TS	POPTR_0001s39260	POPTR_0011s10670 (11)//POPTR_0001s39260 (11)	scaffold_1:38474946-38475041(+) (11)//scaffold_11:13260009-13260104(+) (11)	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT1G78600.1	light-regulated zinc finger protein 1 	LOC_Os01g10580.1	"B-box zinc finger family protein, putative, expressed"	Medtr3g162910.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.5686.3.A1_a_at	A	A1TS	POPTR_0011s10670	POPTR_0011s10670 (11)	scaffold_11:13261750-13262196(+) (11)	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT1G78600.1	light-regulated zinc finger protein 1 	LOC_Os06g05890.1	"B-box zinc finger family protein, putative, expressed"	Medtr3g162910.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.56864.1.S1_at	A	A1TS	POPTR_0009s03480	POPTR_0009s03480 (11)	scaffold_9:4103164-4103734(-) (11)	NA	NA	NA	AT1G47278.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 37 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g16874.3	expressed protein	AC235671_10.1	CHCH AC235671.2 50291-46493 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5688.1.S1_at	A	A1TS	POPTR_0011s10480	POPTR_0011s10480 (11)	scaffold_11:12925301-12925643(-) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G78570.1	rhamnose biosynthesis 1 	LOC_Os03g17000.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.56897.1.A1_at	A	A1TS	POPTR_0003s15170	POPTR_0003s15170 (11)	scaffold_3:15036754-15040953(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56901.1.A1_at	A	A1TS	POPTR_0006s01780	POPTR_0006s01780 (11)	scaffold_6:1076452-1077039(+) (11)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT5G35740.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os07g38930.5	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g148430.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56902.1.A1_at	A	A1TS	POPTR_0003s09760	POPTR_0003s09760 (11)	scaffold_3:11002528-11002781(-) (11)	NA	Q9C551	DEAD-box ATP-dependent RNA helicase 5	AT1G31970.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os07g20580.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g028000.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.56922.1.A1_at	A	A1TS	POPTR_0012s14020	POPTR_0012s14020 (11)	scaffold_12:13998221-14000354(-) (11)	NA	Q6EU39	MADS-box transcription factor 6	AT2G45650.1	AGAMOUS-like 6 	LOC_Os02g45770.1	"OsMADS6 - MADS-box family gene with MIKCc type-box, expressed"	Medtr1g129880.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.56923.1.S1_at	A	A1TS	POPTR_0019s08180	POPTR_0019s08180 (11)	scaffold_19:9647573-9648350(-) (11)	NA	O94808	Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2	AT3G24090.1	glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases 	LOC_Os12g03720.1	"glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed"	Medtr7g089900.1	"Glucosamine-fructose-6-phosphate aminotransferase, isomerising "	GO:0005975|carbohydrate metabolic process	GO:0005529|sugar binding	NA
PtpAffx.56925.1.A1_at	A	A1MS	POPTR_0005s16130	POPTR_0005s16130 (11)	scaffold_5:12779798-12780278(+) (11)	NA	Q8L751	Oxysterol-binding protein-related protein 1C	AT4G08180.1	OSBP(oxysterol binding protein)-related protein 1C 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.56933.1.A1_at	A	A1MS	POPTR_0005s07400	POPTR_0005s07400 (10)	scaffold_5:5063294-5063987(+) (10)	NA	Q1HFZ0	tRNA (cytosine-5-)-methyltransferase NSUN2	AT2G22400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g29630.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr3g101990.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56933.1.A1_s_at	A	A1TS	POPTR_0005s07400	POPTR_0005s07400 (11)	scaffold_5:5063750-5063902(+) (11)	NA	Q1HFZ0	tRNA (cytosine-5-)-methyltransferase NSUN2	AT2G22400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g29630.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr3g101990.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56940.1.A1_at	A	A1TS	POPTR_0007s14870	POPTR_0007s14870 (11)	scaffold_7:14574654-14576610(+) (11)	NA	NA	NA	AT5G67620.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: microtubule; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g10320.1	expressed protein	Medtr8g101740.1	"T10O24.15, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56945.1.A1_at	A	A1MS	POPTR_0015s11040	POPTR_0015s11040 (11)	scaffold_15:11728391-11728948(+) (11)	NA	O82743	Agamous-like MADS-box protein AGL19	AT4G22950.1	AGAMOUS-like 19 	LOC_Os04g49150.1	"OsMADS17 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.56946.1.A1_at	A	A1TS	POPTR_0004s10220	POPTR_0004s10220 (11)	scaffold_4:8783398-8785461(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g49930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56949.1.A1_at	A	A1TS	POPTR_0001s10360	POPTR_0001s10360 (9)	scaffold_1:8051795-8052301(+) (11)	NA	NA	NA	AT5G41790.1	COP1-interactive protein 1 	NA	NA	Medtr5g009510.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.56953.1.A1_at	A	A1MS	POPTR_0001s11590	POPTR_0001s11590 (11)	scaffold_1:9008292-9008835(+) (11)	NA	Q9FKE6	Cyclin-T1-5	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56959.1.A1_at	A	A1MS	POPTR_0009s15580	POPTR_0009s15580 (9)	scaffold_9:12005603-12015558(+) (11)	POPTR_0009s15560 (8)	Q7G192	Aldehyde oxidase 2	AT3G43600.1	aldehyde oxidase 2 	LOC_Os07g18120.1	"aldehyde oxidase, putative, expressed"	Medtr5g094490.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0051536|iron-sulfur cluster binding||GO:0046872|metal ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.56966.1.A1_at	A	A1TS	POPTR_0017s01370	POPTR_0017s01370 (10)	scaffold_17:952750-953125(-) (10)	NA	Q66GI4	"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial"	AT2G32230.1	proteinaceous RNase P 1 	LOC_Os02g17360.2	"PPR repeat domain containing protein, putative, expressed"	Medtr2g122420.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5697.1.S1_at	A	A1TS	POPTR_0005s27980	POPTR_0005s27980 (11)	scaffold_5:25394538-25394994(+) (11)	NA	A6Q0K5	Calvin cycle protein CP12	AT1G76560.1	CP12 domain-containing protein 3 	LOC_Os08g40240.1	"calvin cycle protein CP12, putative, expressed"	CU179634_21.1	Protein of unknown function CP12 CU179634.6 81394-81762 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56970.1.A1_at	A	A1TS	POPTR_0007s14320	POPTR_0007s14320 (9)	scaffold_7:14158205-14158749(+) (11)	NA	Q9LX99	Geminivirus Rep-interacting motor protein	AT5G10470.1	kinesin like protein for actin based chloroplast movement 1 	LOC_Os06g11380.1	"geminivirus Rep-interacting motor protein, putative, expressed"	Medtr8g081300.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.56971.1.A1_s_at	A	A1TS	POPTR_0006s27860	POPTR_0006s27860 (11)	scaffold_6:25707605-25708470(+) (11)	NA	Q8DJ40	Chaperone protein ClpB 1	AT2G25140.1	casein lytic proteinase B4 	LOC_Os02g08490.1	"chaperone protein clpB 1, putative, expressed"	Medtr3g138120.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.56976.1.S1_at	A	A1TS	POPTR_0016s03000	POPTR_0016s03000 (11)	scaffold_16:1505979-1511292(+) (11)	NA	Q94KK7	Syntaxin-52	AT1G79590.2	syntaxin of plants 52 	LOC_Os08g17600.2	"SNARE domain containing protein, putative, expressed"	Medtr3g076210.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56981.1.S1_at	A	A1TS	POPTR_0002s15300	POPTR_0002s15300 (9)	scaffold_2:11431273-11432920(-) (9)	NA	O64645	MADS-box protein SOC1	AT2G45660.1	AGAMOUS-like 20 	LOC_Os03g03070.1	"transcription factor, putative, expressed"	Medtr7g083450.1	"Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.56981.3.S1_at	A	A1MS	POPTR_0002s15310	POPTR_0002s15310 (11)	scaffold_2:11439217-11439689(-) (11)	NA	Q38838	Agamous-like MADS-box protein AGL14	AT4G11880.1	AGAMOUS-like 14 	LOC_Os03g03100.1	"OsMADS50 - MADS-box family gene with MIKCc type-box, expressed"	Medtr7g083460.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.56991.1.A1_at	A	A1TS	POPTR_0005s02450	POPTR_0005s02450 (9)	scaffold_5:1573220-1576065(+) (9)	NA	O22315	Pre-mRNA-splicing factor SF2	AT1G09140.1	SERINE-ARGININE PROTEIN 30 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr1g099910.4	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.56993.1.A1_at	A	A1MS	POPTR_0014s05740	POPTR_0014s05740 (11)	scaffold_14:4296885-4297389(-) (11)	NA	O81304	"Probable plastid-lipid-associated protein 11, chloroplastic"	AT4G00030.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g46610.2	"PAP fibrillin family domain containing protein, expressed"	Medtr7g041170.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.570.1.S1_at	A	A1TS	POPTR_0008s06940	POPTR_0008s06940 (11)	scaffold_8:4195912-4196305(+) (11)	NA	Q9XEE6	Zinc finger CCCH domain-containing protein 29	AT2G40140.2	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g090250.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.57003.1.A1_at	A	A1TS	POPTR_0015s01380	POPTR_0015s01380 (11)	scaffold_15:855538-855718(+) (11)	NA	NA	NA	AT5G53050.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g46460.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g008980.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5701.1.A1_at	A	A1TS	POPTR_0011s04310	POPTR_0011s04310 (11)	scaffold_11:4316455-4316957(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5701.2.S1_at	A	A1TS	POPTR_0004s03510	POPTR_0004s03510 (11)	scaffold_4:2427737-2428109(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g35470.1	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57015.1.A1_at	A	A1TS	POPTR_0017s08180	POPTR_0017s08180 (9)	scaffold_17:6635038-6635341(+) (9)	NA	Q4PSN0	Probable pectinesterase 29	AT3G24130.1	Pectin lyase-like superfamily protein 	LOC_Os01g19440.1	"pectinesterase, putative"	Medtr6g036510.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.57016.1.A1_at	A	A1TS	POPTR_0002s17790	POPTR_0002s17790 (11)	scaffold_2:13626106-13627639(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5702.2.A1_at	A	A1TS	POPTR_0004s22880	POPTR_0004s22880 (10)	scaffold_4:21724009-21724117(+) (10)	NA	Q8W3M7	Uncharacterized membrane protein At4g06598	AT1G58110.2	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os12g09250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.57021.1.A1_at	A	A1TS	POPTR_0009s05730	POPTR_0009s05730 (11)	scaffold_9:5750106-5750546(-) (11)	NA	P72854	Sulfite reductase [ferredoxin]	AT5G04590.1	sulfite reductase 	LOC_Os05g42350.1	"ferredoxin--nitrite reductase, putative, expressed"	Medtr4g129810.1	Ferredoxin-nitrite reductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0051536|iron-sulfur cluster binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.57022.1.A1_at	A	A1TS	POPTR_0011s01460	POPTR_0011s01460 (9)	scaffold_11:1028056-1030504(-) (9)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT4G22120.6	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.57028.1.A1_at	A	A1TS	POPTR_0008s19610	POPTR_0008s19610 (11)	scaffold_8:13507791-13508106(-) (11)	NA	Q869R9	Myb-like protein J	AT1G70000.2	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr5g038100.1	"Zinc finger, CCHC-type; Homeodomain-related "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.57042.1.A1_at	A	A2MS	POPTR_0004s06270	POPTR_0004s06270 (11)//POPTR_0004s06240 (9)	scaffold_4:4943273-4943599(+) (9)//scaffold_4:4962101-4962413(+) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.57046.1.S1_a_at	A	A2TS	POPTR_0006s20490	POPTR_0006s20490 (11)//POPTR_0018s12260 (11)	scaffold_18:12790413-12790782(-) (11)//scaffold_6:19493938-19494368(-) (11)	NA	Q66HG0	E3 ubiquitin-protein ligase RNF13	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57046.1.S1_at	A	A1TS	POPTR_0018s12260	POPTR_0018s12260 (11)	scaffold_18:12790050-12791525(-) (11)	NA	Q9WTV7	E3 ubiquitin-protein ligase RLIM	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57050.1.A1_at	A	A1TS	POPTR_0010s07450	POPTR_0010s07450 (11)	scaffold_10:8494851-8495107(-) (11)	NA	Q4JL84	Transcription factor MYB59	AT4G13480.1	myb domain protein 79 	LOC_Os02g40530.1	"MYB family transcription factor, putative, expressed"	Medtr1g065650.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57053.1.A1_at	A	A1TS	POPTR_0001s31050	POPTR_0001s31050 (11)	scaffold_1:29433479-29433934(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g08110.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57056.1.A1_at	A	A1TS	POPTR_0008s00610	POPTR_0008s00610 (11)	scaffold_8:263672-264744(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57057.1.A1_at	A	A1MS	POPTR_0002s16840	POPTR_0002s16840 (10)	scaffold_2:12598015-12598839(+) (10)	NA	Q6TDP4	Kelch-like protein 17	AT3G61600.2	POZ/BTB containin G-protein 1 	LOC_Os06g31100.1	"E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.57062.1.A1_at	A	A1TS	POPTR_0012s06300	POPTR_0012s06300 (11)	scaffold_12:6627111-6628102(+) (11)	NA	Q10146	Exosome complex exonuclease rrp6	AT2G32415.1	"Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain "	LOC_Os07g32890.1	"3'-5' exonuclease, putative, expressed"	Medtr4g062390.1	HRDC 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.57073.1.A1_s_at	A	A1TS	POPTR_0005s05980	POPTR_0005s05980 (11)	scaffold_5:3945872-3946405(+) (11)	NA	P48384	"Thioredoxin M-type, chloroplastic"	AT4G03520.1	Thioredoxin superfamily protein 	LOC_Os12g08730.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.57082.1.A1_at	A	A1TS	POPTR_0007s06080	POPTR_0007s06080 (11)	scaffold_7:4214255-4214738(-) (11)	NA	Q09851	Uncharacterized oxidoreductase C23D3.11	AT5G10050.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g38420.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g100990.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.57086.1.A1_at	A	A1TA	POPTR_0008s17415	POPTR_0008s17415 (11)	scaffold_8:11687473-11687962(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57091.1.A1_at	A	A1TA	POPTR_0011s07550	POPTR_0011s07550 (10)	scaffold_11:8382585-8383002(-) (11)	NA	NA	NA	AT1G29050.1	TRICHOME BIREFRINGENCE-LIKE 38 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr2g019150.2	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57107.1.A1_at	A	A1TS	POPTR_0004s17650	POPTR_0004s17650 (11)	scaffold_4:17761354-17762265(+) (11)	NA	Q9URY4	Putative amidase C869.01	AT4G34880.1	Amidase family protein 	LOC_Os04g10460.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.57117.1.A1_at	A	A1TS	POPTR_0005s20400	POPTR_0005s20400 (11)	scaffold_5:19467532-19468069(+) (11)	NA	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5712.1.S1_at	A	A2TS	POPTR_0011s16920	POPTR_0011s16920 (11)//POPTR_1909s00200 (9)	scaffold_11:18633492-18633968(-) (11)//scaffold_1909:89-396(-) (9)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT3G13310.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	CU013523_26.1	"Heat shock protein DnaJ, N-terminal CU013523.3 104000-104817 E EGN_Mt090430 200"	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.57122.1.A1_at	A	A1TS	POPTR_0003s06100	POPTR_0003s06100 (11)	scaffold_3:7526679-7527119(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G52630.1	O-fucosyltransferase family protein 	LOC_Os08g42550.6	"AP2 domain containing protein, expressed"	Medtr5g045270.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57123.1.A1_at	A	A1MS	POPTR_0012s04190	POPTR_0012s04190 (10)	scaffold_12:3419504-3419881(-) (10)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT3G17850.1	Protein kinase superfamily protein 	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.57129.1.A1_at	A	A1TS	POPTR_0001s25160	POPTR_0001s25160 (11)	scaffold_1:24370136-24370657(+) (11)	NA	NA	NA	AT3G46780.1	plastid transcriptionally active 16 	LOC_Os05g22614.1	"PTAC16, putative, expressed"	Medtr4g084290.1	"PTAC16 ; binding {Arab, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57130.1.A1_at	A	A1TS	POPTR_0004s15260	POPTR_0004s15260 (11)	scaffold_4:15903195-15904500(-) (11)	NA	Q08747	Upstream activation factor subunit UAF30	AT3G19080.1	SWIB complex BAF60b domain-containing protein 	LOC_Os03g55570.1	"upstream activation factor subunit spp27, putative, expressed"	Medtr5g017990.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57130.1.A1_s_at	A	A1TS	POPTR_0004s15260	POPTR_0004s15260 (11)	scaffold_4:15901504-15904549(-) (11)//scaffold_9:9282493-9285465(-) (9)	NA	Q08747	Upstream activation factor subunit UAF30	AT3G19080.1	SWIB complex BAF60b domain-containing protein 	LOC_Os03g55570.1	"upstream activation factor subunit spp27, putative, expressed"	Medtr5g017990.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57131.1.A1_at	A	A1TS	POPTR_0004s16850	POPTR_0004s16850 (11)	scaffold_4:17211253-17211404(+) (11)	NA	O65351	Subtilisin-like protease	AT4G10520.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr4g132770.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.57131.1.A1_s_at	A	A1TS	POPTR_0004s16850	POPTR_0004s16850 (11)	scaffold_4:17211413-17212634(+) (11)	NA	O65351	Subtilisin-like protease	AT4G10520.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr4g132770.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.57135.1.A1_at	A	A1TS	POPTR_0010s02900	POPTR_0010s02900 (11)	scaffold_10:3378838-3379344(+) (11)	NA	Q9WUU9	80 kDa MCM3-associated protein	AT3G06290.1	SAC3/GANP/Nin1/mts3/eIF-3 p25 family 	LOC_Os07g45160.1	"SAC3/GANP family protein, expressed"	Medtr2g026060.1	SAC3/GANP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57138.1.A1_s_at	A	A1TS	POPTR_0002s02480	POPTR_0002s02480 (11)	scaffold_2:1399472-1399562(-) (11)	NA	NA	NA	AT1G75710.1	C2H2-like zinc finger protein 	LOC_Os04g02510.1	"ZOS4-01 - C2H2 zinc finger protein, expressed"	Medtr1g030900.1	"Zinc finger, C2H2-type "	GO:0009405|pathogenesis||GO:0051704|multi-organism process	GO:0019855|calcium channel inhibitor activity||GO:0008270|zinc ion binding	GO:0005622|intracellular||GO:0005576|extracellular region
PtpAffx.5714.1.S1_at	A	A1TS	POPTR_0001s15460	POPTR_0001s15460 (11)	scaffold_1:12279767-12280211(-) (11)	NA	Q86BN8	Protein-tyrosine phosphatase mitochondrial 1-like protein	AT2G35680.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os10g41240.1	"dual specificity protein phosphatase, putative, expressed"	Medtr8g105260.2	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.5714.2.S1_a_at	A	A1TS	POPTR_0003s07780	POPTR_0003s07780 (11)	scaffold_3:9312076-9312402(+) (11)	NA	Q86BN8	Protein-tyrosine phosphatase mitochondrial 1-like protein	AT2G35680.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os10g41240.1	"dual specificity protein phosphatase, putative, expressed"	Medtr8g105260.2	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.57142.1.A1_at	A	A1TA	POPTR_0006s19340	POPTR_0006s19340 (11)	scaffold_6:18397661-18397927(-) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G54010.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g26950.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr1g112000.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57143.1.A1_at	A	A1TS	POPTR_0001s29660	POPTR_0001s29660 (11)	scaffold_1:28309411-28310679(+) (11)	NA	NA	NA	AT1G50020.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os11g34870.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57161.1.A1_s_at	A	A1TS	POPTR_0009s15750	POPTR_0009s15750 (11)	scaffold_9:12114576-12114802(-) (11)	NA	Q3T0Q6	Cellular nucleic acid-binding protein	AT3G43590.1	zinc knuckle (CCHC-type) family protein 	LOC_Os11g36480.2	"zinc knuckle domain containing protein, expressed"	Medtr3g110690.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.57163.1.A1_at	A	A1TS	POPTR_0005s25890	POPTR_0005s25890 (11)	scaffold_5:24102522-24102997(-) (11)	NA	Q69SG5	Endoglucanase 24	AT1G19940.1	glycosyl hydrolase 9B5 	LOC_Os09g36350.1	"endoglucanase, putative, expressed"	Medtr3g156150.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.57173.1.A1_at	A	A1TS	POPTR_0010s07860	POPTR_0010s07860 (11)	scaffold_10:8848552-8849026(+) (11)	NA	NA	NA	AT2G33420.1	Protein of unknown function (DUF810) 	LOC_Os03g04560.1	expressed protein	Medtr1g064880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57179.1.A1_at	A	A1TS	POPTR_0011s05680	POPTR_0011s05680 (11)	scaffold_11:5651352-5651773(+) (11)	NA	Q9FNL2	Pentatricopeptide repeat-containing protein At5g46100	AT5G46100.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g48140.1	"pentatricopeptide containing protein, putative"	Medtr2g018090.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57185.1.A1_s_at	A	A1TS	POPTR_0012s09840	POPTR_0012s09840 (11)	scaffold_12:10754317-10754596(+) (11)	NA	P93447	Elongation factor 1-delta	AT2G18110.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os03g29260.2	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.57185.1.A1_x_at	A	A1TS	POPTR_0012s09840	POPTR_0012s09840 (11)	scaffold_12:10754161-10754587(+) (11)	NA	P93447	Elongation factor 1-delta	AT2G18110.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os03g29260.2	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.57186.1.A1_a_at	A	A2TS	POPTR_0005s11830	POPTR_0007s13960 (11)//POPTR_0005s11830 (11)	scaffold_5:8605537-8605768(+) (11)//scaffold_7:13941406-13941637(-) (11)	NA	P93031	"GDP-mannose 4,6 dehydratase 2"	AT3G51160.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g04620.1	"GDP-mannose 4,6 dehydratase 2, putative, expressed"	Medtr5g021700.1	"NAD-dependent epimerase/dehydratase; Short-chain dehydrogenase/reductase SDR; GDP-mannose 4,6-dehydratase "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.57186.1.A1_at	A	A1TS	POPTR_0007s13960	POPTR_0007s13960 (11)	scaffold_7:13941237-13941618(-) (11)	NA	P93031	"GDP-mannose 4,6 dehydratase 2"	AT3G51160.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g04620.1	"GDP-mannose 4,6 dehydratase 2, putative, expressed"	Medtr5g021700.1	"NAD-dependent epimerase/dehydratase; Short-chain dehydrogenase/reductase SDR; GDP-mannose 4,6-dehydratase "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.57186.2.A1_at	A	A1TS	POPTR_0005s11830	POPTR_0005s11830 (11)	scaffold_5:8605615-8606106(+) (11)	NA	P93031	"GDP-mannose 4,6 dehydratase 2"	AT3G51160.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g04620.1	"GDP-mannose 4,6 dehydratase 2, putative, expressed"	Medtr5g021700.1	"NAD-dependent epimerase/dehydratase; Short-chain dehydrogenase/reductase SDR; GDP-mannose 4,6-dehydratase "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.57191.1.A1_at	A	A1TS	POPTR_0007s11060	POPTR_0007s11060 (11)	scaffold_7:11321738-11322106(+) (11)	NA	Q8LDU4	"Red chlorophyll catabolite reductase, chloroplastic"	AT4G37000.1	accelerated cell death 2 (ACD2) 	LOC_Os10g25030.1	"red chlorophyll catabolite reductase, putative, expressed"	Medtr5g103790.1	Red chlorophyll catabolite reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57192.1.A1_s_at	A	A1TS	POPTR_0002s18540	POPTR_0002s18540 (11)	scaffold_2:14434358-14435503(+) (11)	NA	NA	NA	AT5G03050.1	unknown protein; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g103500.1	"knotted 1-binding protein 36, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.572.2.S1_at	A	A1TS	POPTR_0010s13930	POPTR_0010s13930 (11)	scaffold_10:13630392-13630920(-) (11)	NA	Q9C6M5	AP2/ERF and B3 domain-containing transcription repressor TEM1	AT1G25560.1	AP2/B3 transcription factor family protein 	LOC_Os01g49830.1	"B3 DNA binding domain containing protein, expressed"	Medtr5g069060.1	Pathogenesis-related transcriptional factor and ERF; Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.572.3.S1_a_at	A	A1TS	POPTR_0010s13930	POPTR_0010s13930 (11)	scaffold_10:13631062-13631250(-) (11)	NA	Q9C6M5	AP2/ERF and B3 domain-containing transcription repressor TEM1	AT1G25560.1	AP2/B3 transcription factor family protein 	LOC_Os01g49830.1	"B3 DNA binding domain containing protein, expressed"	Medtr5g069060.1	Pathogenesis-related transcriptional factor and ERF; Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.572.3.S1_at	A	A1TS	POPTR_0010s13930	POPTR_0010s13930 (11)	scaffold_10:13631288-13631502(-) (11)	NA	Q9C6M5	AP2/ERF and B3 domain-containing transcription repressor TEM1	AT1G25560.1	AP2/B3 transcription factor family protein 	LOC_Os01g49830.1	"B3 DNA binding domain containing protein, expressed"	Medtr5g069060.1	Pathogenesis-related transcriptional factor and ERF; Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.5724.1.A1_at	A	A1TS	POPTR_0018s10180	POPTR_0018s10180 (11)	scaffold_18:11153295-11153799(-) (11)	NA	P42056	Mitochondrial outer membrane protein porin of 36 kDa	AT5G57490.1	voltage dependent anion channel 4 	LOC_Os03g04460.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr8g128760.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.5724.2.S1_s_at	A	A1TS	POPTR_0006s18470	POPTR_0006s18470 (11)	scaffold_6:16894473-16894967(-) (11)	NA	P42056	Mitochondrial outer membrane protein porin of 36 kDa	AT5G57490.1	voltage dependent anion channel 4 	LOC_Os03g04460.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr8g128760.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.5724.3.S1_a_at	A	A1TS	POPTR_0006s18470	POPTR_0006s18470 (11)	scaffold_6:16898869-16901000(-) (11)	NA	P42056	Mitochondrial outer membrane protein porin of 36 kDa	AT5G57490.1	voltage dependent anion channel 4 	LOC_Os03g04460.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr8g128760.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.5724.3.S1_at	A	A1TS	POPTR_0006s18470	POPTR_0006s18470 (11)	scaffold_6:16901064-16901842(-) (11)//scaffold_773:8255-8295(+) (10)	NA	P42056	Mitochondrial outer membrane protein porin of 36 kDa	AT5G57490.1	voltage dependent anion channel 4 	LOC_Os03g04460.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr8g128760.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.57241.1.A1_s_at	A	A1TS	POPTR_0001s12560	POPTR_0001s12560 (11)	scaffold_1:9740541-9741010(-) (11)	NA	Q5AYT7	Hsp70 nucleotide exchange factor fes1	AT3G51980.1	ARM repeat superfamily protein 	LOC_Os09g33780.1	expressed protein	Medtr3g110290.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57249.1.A1_at	A	A1TS	POPTR_0014s09100	POPTR_0014s09100 (9)	scaffold_14:6708561-6709116(-) (9)	NA	Q9SYX2	Protein SUPPRESSOR OF PHYA-105 1	AT2G46340.1	SPA (suppressor of phyA-105) protein family 	LOC_Os05g49590.2	"suppressor of phythchrome A, putative, expressed"	Medtr5g009560.1	Protein kinase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57249.2.A1_a_at	A	A1TS	POPTR_0014s09100	POPTR_0014s09100 (11)	scaffold_14:6710218-6710424(-) (11)	NA	Q9SYX2	Protein SUPPRESSOR OF PHYA-105 1	AT2G46340.1	SPA (suppressor of phyA-105) protein family 	LOC_Os05g49590.2	"suppressor of phythchrome A, putative, expressed"	Medtr5g009560.1	Protein kinase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57251.1.S1_at	A	A1TS	POPTR_0010s18370	POPTR_0010s18370 (11)	scaffold_10:16631586-16631872(+) (11)	NA	O32107	Uncharacterized membrane protein yuiD	AT3G12685.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os06g33930.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr2g080680.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57260.1.S1_at	A	A1TS	POPTR_0004s02030	POPTR_0004s02030 (11)	scaffold_4:1286999-1287402(+) (11)	NA	Q8L9A9	Probable xyloglucan endotransglucosylase/hydrolase protein 8	AT1G11545.1	xyloglucan endotransglucosylase/hydrolase 8 	LOC_Os07g34580.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g102140.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.57272.1.A1_at	A	A1TS	POPTR_0005s11760	POPTR_0005s11760 (11)	scaffold_5:8563417-8563678(+) (11)	NA	NA	NA	AT2G17990.1	BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to 6129 proteins in 783 species: Archae - 220; Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI BLink). 	LOC_Os06g50146.1	"calcium-dependent protein kinase CPK1 adapter protein 2, putative, expressed"	Medtr8g090110.1	"Calcium-dependent protein kinase CPK1 adapter protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57284.1.A1_at	A	A1TS	POPTR_0009s16300	POPTR_0009s16300 (11)	scaffold_9:12428358-12428854(+) (11)	NA	NA	NA	AT5G06270.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g33860.1	expressed protein	AC146630_13.1	hypothetical protein AC146630.25 80011-79050 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57286.1.A1_at	A	A1TS	POPTR_0014s13940	POPTR_0014s13940 (11)	scaffold_14:10186732-10188021(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G58640.2	Mitogen activated protein kinase kinase kinase-related 	LOC_Os01g48330.1	"protein kinase domain containing protein, expressed"	Medtr4g109800.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.57293.1.A1_s_at	A	A1TS	POPTR_0009s12270	POPTR_0009s12270 (11)	scaffold_9:10046089-10047047(+) (11)	NA	NA	NA	AT2G16385.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr8g040310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57294.1.A1_at	A	A1TS	POPTR_0001s26320	POPTR_0001s26320 (11)	scaffold_1:25370007-25370110(-) (11)	NA	Q9UBL3	Set1/Ash2 histone methyltransferase complex subunit ASH2	AT1G51450.1	TRAUCO 	LOC_Os12g04930.1	"ASH-like SPRY domain containing protein, putative, expressed"	Medtr4g104590.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5730.1.A1_s_at	A	A1TS	POPTR_0001s47660	POPTR_0001s47660 (11)	scaffold_1:47807208-47808628(-) (11)	NA	Q8RXR2	Chloride channel protein CLC-f	AT1G55620.2	chloride channel F 	LOC_Os08g38980.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr5g106870.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.57302.1.A1_at	A	A1TS	POPTR_0010s13870	POPTR_0010s13870 (11)	scaffold_10:13576800-13576984(-) (11)	NA	Q6GP15	Mediator of RNA polymerase II transcription subunit 25	AT1G25540.1	phytochrome and flowering time regulatory protein (PFT1) 	LOC_Os09g13610.1	"PFT1, putative, expressed"	Medtr5g068600.1	"PFT1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57305.1.A1_at	A	A1MS	POPTR_0002s24890	POPTR_0002s24890 (10)	scaffold_2:22112651-22113057(+) (10)	NA	P43294	Serine/threonine-protein kinase MHK	AT4G13020.4	Protein kinase superfamily protein 	LOC_Os03g63020.1	"protein kinase domain containing protein, expressed"	Medtr8g012830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.57307.1.A1_at	A	A1MA	POPTR_0009s15780	POPTR_0009s15780 (11)	scaffold_9:12140888-12141110(-) (11)	NA	Q9GYZ0	Kinesin-like protein KIF15	AT3G44050.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g53920.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g104560.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.57313.1.A1_at	A	A1TS	POPTR_0017s09000	POPTR_0017s09000 (10)	scaffold_17:7657821-7658956(-) (10)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g33510.2	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g094460.2	"Uncharacterized protein At2g33490, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57317.1.S1_at	A	A1TS	POPTR_0001s02190	POPTR_0001s02190 (11)	scaffold_1:1641191-1641725(+) (11)	NA	O23617	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5"	AT4G17770.1	trehalose phosphatase/synthase 5 	LOC_Os09g23350.1	"trehalose synthase, putative, expressed"	Medtr4g156760.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.57339.1.A1_at	A	A1TS	POPTR_0016s05270	POPTR_0016s05270 (9)	scaffold_16:3201209-3201483(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57344.1.A1_at	A	A1TS	POPTR_0014s11730	POPTR_0014s11730 (10)	scaffold_14:8702224-8702412(+) (10)	NA	Q94KD8	Probable beta-D-xylosidase 2	AT1G02640.1	beta-xylosidase 2 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.57354.1.A1_at	A	A1TS	POPTR_0011s07320	POPTR_0011s07320 (11)	scaffold_11:8074187-8074702(-) (11)	NA	Q9SIM9	F-box protein ORE9	AT2G42620.1	RNI-like superfamily protein 	LOC_Os06g06050.1	"OsFBL27 - F-box domain and LRR containing protein, expressed"	Medtr4g109790.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57355.1.S1_at	A	A1TS	POPTR_0001s24020	POPTR_0001s24020 (11)	scaffold_1:23428351-23429092(+) (11)	NA	O23826	125 kDa kinesin-related protein	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.57361.1.A1_at	A	A1TS	POPTR_0003s15210	POPTR_0003s15210 (9)	scaffold_3:15065371-15066033(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5738.1.S1_at	A	A1TS	POPTR_0002s19530	POPTR_0002s19530 (11)	scaffold_2:15498125-15499197(+) (11)	NA	NA	NA	AT4G01995.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g04070.1	expressed protein	Medtr1g106530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57380.1.A1_at	A	A1MS	POPTR_0005s01540	POPTR_0005s01540 (10)	scaffold_5:1011946-1012147(-) (10)	NA	O80482	Transcription factor bHLH149	AT1G09250.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g19780.1	expressed protein	Medtr8g137080.1	transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57393.1.A1_at	A	A1TS	POPTR_0003s13390	POPTR_0003s13390 (11)	scaffold_3:13790902-13791296(+) (11)	NA	Q9LS46	Aluminum-activated malate transporter 9	AT3G18440.1	aluminum-activated malate transporter 9 	LOC_Os01g12210.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57398.1.A1_at	A	A1TS	POPTR_0005s09210	POPTR_0005s09210 (10)	scaffold_5:6441918-6442129(+) (10)	NA	Q8GYD9	Probable RNA helicase SDE3	AT1G05460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g06440.2	"RNA helicase SDE3, putative, expressed"	Medtr2g056800.1	"DEAD-like helicase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57399.1.S1_a_at	A	A1TS	POPTR_0006s02250	POPTR_0006s02250 (11)	scaffold_6:1474534-1474710(+) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT3G22260.1	Cysteine proteinases superfamily protein 	LOC_Os02g07210.4	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57399.3.S1_a_at	A	A1TS	POPTR_0006s02250	POPTR_0006s02250 (11)	scaffold_6:1477175-1477652(+) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT3G22260.1	Cysteine proteinases superfamily protein 	LOC_Os02g07210.4	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57399.3.S1_at	A	A1MS	POPTR_0006s02250	POPTR_0006s02250 (9)	scaffold_6:1476866-1477846(+) (10)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT3G22260.1	Cysteine proteinases superfamily protein 	LOC_Os02g07210.4	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57414.1.A1_at	A	A1TA	POPTR_0017s04810	POPTR_0017s04810 (10)	scaffold_17:3707691-3708013(+) (10)	NA	Q9H0R5	Guanylate-binding protein 3	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.57429.1.A1_at	A	A1TS	POPTR_0014s12240	POPTR_0014s12240 (11)	scaffold_14:9041144-9041558(+) (11)	NA	NA	NA	AT1G02816.1	"Protein of unknown function, DUF538 "	LOC_Os05g29900.1	expressed protein	Medtr1g108140.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5746.2.S1_x_at	A	A1TS	POPTR_0015s07010	POPTR_0015s07010 (11)	scaffold_15:8088371-8089916(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5746.3.S1_s_at	A	A1TS	POPTR_0015s07010	POPTR_0015s07010 (11)	scaffold_15:8088230-8088450(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5746.4.S1_s_at	A	A1TS	POPTR_0015s07010	POPTR_0015s07010 (11)	scaffold_15:8089596-8089917(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57491.1.A1_at	A	A1TS	POPTR_0004s13470	POPTR_0004s13470 (11)	scaffold_4:13581110-13581446(+) (11)	NA	Q5EA79	Aldose 1-epimerase	AT3G47800.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g38530.1	"aldose 1-epimerase, putative, expressed"	Medtr7g009340.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.575.1.A1_at	A	A1TS	POPTR_0002s19390	POPTR_0002s19390 (9)	scaffold_2:15347245-15347760(-) (11)	NA	O22900	Probable WRKY transcription factor 23	AT2G47260.1	WRKY DNA-binding protein 23 	LOC_Os07g02060.1	"OsWRKY29 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g106500.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.57521.1.S1_at	A	A1TS	POPTR_0009s16600	POPTR_0009s16600 (11)	scaffold_9:12580502-12580916(-) (11)	NA	NA	NA	AT5G22450.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73620.1	expressed protein	Medtr4g070070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5753.1.S1_at	A	A1TS	POPTR_0001s45670	POPTR_0001s45670 (9)	scaffold_1:46240736-46240996(-) (9)	NA	NA	NA	AT2G18196.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g02860.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g025130.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.57531.1.A1_at	A	A1TS	POPTR_0009s13570	POPTR_0009s13570 (11)	scaffold_9:10768920-10770061(+) (11)	NA	Q9ZNT3	Actin-depolymerizing factor 5	AT2G16700.1	actin depolymerizing factor 5 	LOC_Os03g13950.1	"actin-depolymerizing factor, putative, expressed"	AC233662_56.1	"Actin-binding, cofilin/tropomyosin type AC233662.1 257418-259371 F EGN_Mt090430 200"	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.57533.1.S1_a_at	A	A2TS	POPTR_0014s15800	POPTR_0014s15800 (10)//POPTR_0014s15810 (9)	scaffold_14:11867984-11868289(+) (10)//scaffold_14:11887367-11887623(+) (9)	NA	Q67ZU1	Triacylglycerol lipase 2	AT5G14180.1	Myzus persicae-induced lipase 1 	LOC_Os04g21160.1	"triacylglycerol lipase 1 precursor, putative"	Medtr5g092310.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.57539.1.A1_at	A	A1TS	POPTR_0003s13020	POPTR_0003s13020 (11)	scaffold_3:13427516-13428015(-) (11)	NA	NA	NA	AT1G75060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g08450.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57544.1.A1_at	A	A1TS	POPTR_0019s02310	POPTR_0019s02310 (11)	scaffold_19:2132597-2133053(+) (10)//scaffold_19:2149029-2149514(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57573.1.S1_at	A	A1TS	POPTR_0001s37230	POPTR_0001s37230 (11)	scaffold_1:36183602-36184334(-) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.5759.1.S1_at	A	A1TS	POPTR_0003s14270	POPTR_0003s14270 (11)	scaffold_3:14382638-14384167(+) (11)	NA	Q9SGW3	26S proteasome non-ATPase regulatory subunit RPN12A	AT1G64520.1	regulatory particle non-ATPase 12A 	LOC_Os07g25420.1	"26S proteasome non-ATPase regulatory subunit 8, putative, expressed"	Medtr1g020820.1	SAC3/GANP; 26S proteasome non-ATPase regulatory subunit Nin1/mts3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.576.1.S1_s_at	A	A1TS	POPTR_0010s14660	POPTR_0010s14660 (11)	scaffold_10:14190524-14191308(-) (11)	NA	P36183	Endoplasmin homolog	AT2G04030.1	Chaperone protein htpG family protein 	LOC_Os09g29840.1	"heat shock protein, putative, expressed"	Medtr5g105030.2	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.5762.1.S1_s_at	A	A1TS	POPTR_0001s26970	POPTR_0001s26970 (11)	scaffold_1:25947672-25948040(+) (11)	NA	Q9LY66	"50S ribosomal protein L1, chloroplastic"	AT3G63490.1	Ribosomal protein L1p/L10e family 	LOC_Os05g32220.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr4g110000.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.5765.1.A1_at	A	A1TS	POPTR_0001s20750	POPTR_0001s20750 (11)	scaffold_1:18851490-18862554(+) (11)	NA	Q05370	Uncharacterized 16.3 kDa protein in atpI 5'region	AT1G55140.1	Ribonuclease III family protein 	LOC_Os11g13420.3	"RNA binding protein, putative, expressed"	Medtr2g121420.1	Ribonuclease III 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003723|RNA binding	NA
PtpAffx.57659.1.S1_at	A	A1TS	POPTR_0006s23150	POPTR_0006s23150 (11)	scaffold_6:21993836-21994238(-) (11)	NA	NA	NA	AT5G02640.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g02900.1	expressed protein	Medtr7g120510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57659.2.A1_at	A	A1TA	POPTR_0016s08240	POPTR_0016s08240 (11)	scaffold_16:6081096-6081432(+) (11)	NA	NA	NA	AT5G02640.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g02900.1	expressed protein	Medtr7g120510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57677.1.S1_at	A	A1TS	POPTR_0002s15090	POPTR_0002s15090 (11)	scaffold_2:11188170-11190637(-) (11)	NA	NA	NA	AT5G42660.1	Protein of unknown function (DUF616) 	LOC_Os01g54530.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr1g025800.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5769.1.A1_s_at	A	A1TS	POPTR_0014s08920	POPTR_0014s08920 (11)	scaffold_14:6583349-6584437(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT5G41620.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g15980.1	expressed protein	Medtr5g009870.1	"Uncharacterized protein At5g41620, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5770.1.S1_s_at	A	A2TS	POPTR_0001s34360	POPTR_0001s34360 (11)//POPTR_0011s02930 (11)	scaffold_1:32507727-32507896(-) (11)//scaffold_11:2885237-2885406(+) (11)	NA	Q7ZV68	Vacuolar protein sorting-associated protein 29	AT3G47810.3	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os02g16550.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr3g109790.1	Protein of unknown function UPF0025; Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.5770.2.S1_at	A	A1TS	POPTR_0001s34360	POPTR_0001s34360 (10)	scaffold_1:32507405-32507833(-) (10)	NA	Q7ZV68	Vacuolar protein sorting-associated protein 29	AT3G47810.3	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os02g16550.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr3g109790.1	Protein of unknown function UPF0025; Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.5772.1.A1_at	A	A1TS	POPTR_0001s20390	POPTR_0001s20390 (11)	scaffold_1:18309105-18309305(+) (11)	NA	Q84LG4	Coatomer subunit zeta-2	AT4G08520.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr8g020930.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.5772.3.A1_at	A	A2TA	POPTR_0014s09070	POPTR_0014s09080 (9)//POPTR_0014s09070 (9)	scaffold_14:6693360-6700801(+) (10)	NA	NA	NA	AT5G41761.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g33200.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5772.4.A1_a_at	A	A1TS	POPTR_0002s16940	POPTR_0002s16940 (11)	scaffold_2:12673906-12674283(-) (11)	NA	NA	NA	AT5G41761.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g33200.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57723.1.S1_s_at	A	A1TS	POPTR_0015s00550	POPTR_0015s00550 (11)	scaffold_15:343165-343379(-) (11)	NA	Q43047	Caffeic acid 3-O-methyltransferase 3	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.57754.1.A1_at	A	A1TS	POPTR_0013s10410	POPTR_0013s10410 (11)	scaffold_13:10693426-10693929(+) (11)	NA	P29136	Metalloendoproteinase 1	AT1G59970.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr6g009200.1	Peptidoglycan binding-like 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.57775.1.S1_s_at	A	A1TS	POPTR_0005s20230	POPTR_0005s20230 (11)	scaffold_5:19259189-19259942(-) (11)	NA	NA	NA	AT1G77460.2	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein 	LOC_Os11g08090.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57805.1.S1_at	A	A1TS	POPTR_0004s08720	POPTR_0004s08720 (11)	scaffold_4:7293751-7295112(-) (11)	NA	Q8RY22	Protease Do-like 7	AT3G03380.1	DegP protease 7 	LOC_Os02g48180.1	"OsDegp2 - Putative Deg protease homologue, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5781.1.A1_at	A	A1MS	POPTR_0010s22680	POPTR_0010s22680 (11)	scaffold_10:19511023-19511773(+) (11)	NA	Q9SFB5	Serine carboxypeptidase-like 27	AT3G07990.1	serine carboxypeptidase-like 27 	LOC_Os01g61690.1	"OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.57813.1.A1_at	A	A1MS	POPTR_0002s01390	POPTR_0002s01390 (11)	scaffold_2:725786-726419(-) (11)	NA	Q8LBB7	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5	AT4G35190.1	Putative lysine decarboxylase family protein 	LOC_Os02g41770.1	"uncharacterized protein PA4923, putative"	Medtr7g121720.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57833.1.S1_at	A	A1TS	POPTR_0003s09430	POPTR_0003s09430 (11)	scaffold_3:10718674-10719089(+) (11)	NA	NA	NA	AT1G32260.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35480.1); Has 48 Blast hits to 48 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g03560.1	expressed protein	Medtr5g029510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5786.1.A1_at	A	A1TS	POPTR_0006s02810	POPTR_0006s02810 (11)	scaffold_6:1774234-1774268(-) (11)	NA	Q945B7	"Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic"	AT3G56940.1	"dicarboxylate diiron protein, putative (Crd1) "	LOC_Os01g17170.1	"magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed"	Medtr7g105140.1	Ferritin/ribonucleotide reductase-like; Ferritin-related 	NA	GO:0046872|metal ion binding	NA
PtpAffx.5787.1.A1_at	A	A1TS	POPTR_0003s20820	POPTR_0003s20820 (10)	scaffold_3:19224214-19224457(+) (10)	NA	NA	NA	AT4G26370.1	antitermination NusB domain-containing protein 	LOC_Os03g45400.1	"antitermination NusB domain-containing protein, putative, expressed"	Medtr4g115130.1	NusB/RsmB/TIM44 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003723|RNA binding	NA
PtpAffx.5788.1.A1_s_at	A	A1TS	POPTR_0010s07870	POPTR_0010s07870 (11)	scaffold_10:8850871-8852091(-) (11)	NA	Q9FNL7	Peptide transporter PTR3-A	AT5G46050.1	peptide transporter 3 	LOC_Os10g33210.1	"peptide transporter PTR3-A, putative, expressed"	Medtr1g090040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.579.1.S1_s_at	A	A1TS	POPTR_0014s06370	POPTR_0014s06370 (11)	scaffold_14:4850540-4850584(+) (11)	NA	Q43848	"Transketolase, chloroplastic"	AT3G60750.1	Transketolase 	LOC_Os06g04270.1	"transketolase, chloroplast precursor, putative, expressed"	Medtr2g132820.1	Bacterial transketolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.579.2.S1_s_at	A	A1TS	POPTR_0002s14730	POPTR_0002s14730 (11)	scaffold_14:4851770-4852140(+) (11)//scaffold_2:10938760-10939130(+) (11)	NA	Q43848	"Transketolase, chloroplastic"	AT2G45290.1	Transketolase 	LOC_Os06g04270.1	"transketolase, chloroplast precursor, putative, expressed"	Medtr2g132820.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.5792.1.A1_at	A	A1TS	POPTR_0006s17950	POPTR_0006s17950 (10)	scaffold_6:16237793-16240233(-) (10)	NA	NA	NA	AT5G57345.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g47970.1	expressed protein	Medtr8g129420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57928.1.S1_s_at	A	A1TS	POPTR_0008s02740	POPTR_0008s02740 (11)	scaffold_8:1393750-1394575(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.57928.2.S1_at	A	A1TS	POPTR_0010s23940	POPTR_0010s23940 (10)	scaffold_10:20380731-20381322(-) (10)	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.57941.1.S1_s_at	A	A1TS	POPTR_0005s11850	POPTR_0005s11850 (11)	scaffold_5:8613669-8613841(+) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	Medtr8g090220.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.5795.1.S1_at	A	A2TS	POPTR_0006s23310	POPTR_0006s23310 (11)//POPTR_0018s04900 (9)	scaffold_18:4331412-4331881(-) (9)//scaffold_6:22070646-22071104(+) (11)	POPTR_0563s00200 (8)	Q41365	26S protease regulatory subunit 7	AT1G53750.1	regulatory particle triple-A 1A 	LOC_Os06g09290.1	"26S protease regulatory subunit 7, putative, expressed"	Medtr1g121600.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.5795.1.S1_s_at	A	A1TS	POPTR_0006s23310	POPTR_0006s23310 (11)	scaffold_6:22071089-22071399(+) (11)	POPTR_0018s04900 (8)//POPTR_0563s00200 (6)	Q41365	26S protease regulatory subunit 7	AT1G53750.1	regulatory particle triple-A 1A 	LOC_Os06g09290.1	"26S protease regulatory subunit 7, putative, expressed"	Medtr1g121600.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.57953.1.A1_at	A	A1TS	POPTR_0002s04280	POPTR_0002s04280 (11)	scaffold_2:2691443-2691808(+) (11)	NA	Q0V7S6	F-box/kelch-repeat protein OR23	AT4G03030.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g21110.1	"OsFBK6 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5796.1.A1_at	A	A1TS	POPTR_0001s13670	POPTR_0001s13670 (11)	scaffold_1:10765723-10767860(+) (11)	NA	NA	NA	AT1G27290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g32960.2	expressed protein	Medtr3g104180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5797.1.A1_at	A	A1TS	POPTR_0007s07120	POPTR_0007s07120 (10)	scaffold_7:5448874-5449259(-) (10)	NA	Q94JQ6	Cellulose synthase A catalytic subunit 6 [UDP-forming]	AT5G64740.1	cellulose synthase 6 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr4g141680.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.57976.1.A1_s_at	A	A1TS	POPTR_0003s11110	POPTR_0003s11110 (11)	scaffold_3:11980997-11981337(+) (11)	NA	NA	NA	AT4G22560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 380 Blast hits to 380 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g44280.1	"zinc finger protein, putative"	Medtr5g012350.1	"AT1G62520, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57990.1.A1_s_at	A	A1TS	POPTR_0013s09400	POPTR_0013s09400 (11)	scaffold_13:9104321-9104784(-) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT3G56370.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g080410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.57998.1.S1_at	A	A1TS	POPTR_0020s00250	POPTR_0020s00250 (11)	scaffold_20:242369-242710(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58004.1.S1_at	A	A1TS	POPTR_0006s29390	POPTR_0006s29390 (11)	scaffold_6:26762690-26764927(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os08g40880.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g133100.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.5801.1.S1_at	A	A1TS	POPTR_0011s11080	POPTR_0011s11080 (11)	scaffold_11:13752098-13752161(-) (11)	NA	Q9LXT3	Multiprotein-bridging factor 1b	AT3G58680.1	multiprotein bridging factor 1B 	LOC_Os08g27850.1	"endothelial differentiation-related factor 1, putative, expressed"	Medtr4g109950.1	Helix-turn-helix motif 	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.5801.1.S1_s_at	A	A2TS	POPTR_0001s40090	POPTR_0001s40090 (11)//POPTR_0011s11080 (11)	scaffold_1:39399442-39401349(-) (11)//scaffold_11:13752220-13754090(-) (11)	NA	Q9LXT3	Multiprotein-bridging factor 1b	AT3G58680.1	multiprotein bridging factor 1B 	LOC_Os08g27850.1	"endothelial differentiation-related factor 1, putative, expressed"	Medtr4g109950.1	Helix-turn-helix motif 	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.5801.1.S1_x_at	A	A1TS	POPTR_0011s11080	POPTR_0011s11080 (11)	scaffold_11:13752058-13754132(-) (11)	NA	Q9LXT3	Multiprotein-bridging factor 1b	AT3G58680.1	multiprotein bridging factor 1B 	LOC_Os08g27850.1	"endothelial differentiation-related factor 1, putative, expressed"	Medtr4g109950.1	Helix-turn-helix motif 	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.5801.2.S1_a_at	A	A1TS	POPTR_0011s11080	POPTR_0011s11080 (11)	scaffold_11:13752049-13754164(-) (11)	NA	Q9LXT3	Multiprotein-bridging factor 1b	AT3G58680.1	multiprotein bridging factor 1B 	LOC_Os08g27850.1	"endothelial differentiation-related factor 1, putative, expressed"	Medtr4g109950.1	Helix-turn-helix motif 	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.58064.1.S1_at	A	A1MS	POPTR_0012s02570	POPTR_0012s02570 (11)	scaffold_12:2114307-2114815(+) (11)	NA	Q8LAP8	Dof zinc finger protein DOF4.6	AT4G24060.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os04g47990.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.58069.1.S1_at	A	A1TA	POPTR_0008s08300	POPTR_0008s08300 (11)	scaffold_8:5160771-5161195(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58071.1.S1_at	A	A1TS	POPTR_0004s03380	POPTR_0004s03380 (9)	scaffold_4:2318631-2319099(-) (9)	NA	Q6FJV1	Vacuolar protein 8	AT1G61350.1	ARM repeat superfamily protein 	LOC_Os07g37350.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr4g124890.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58080.1.A1_at	A	A2TS	POPTR_0018s12570	POPTR_0025s00790 (10)//POPTR_0018s12570 (10)	scaffold_18:13124971-13125753(+) (10)//scaffold_25:440191-441455(+) (10)	NA	NA	NA	AT2G11000.2	MAK10 homologue 	LOC_Os02g55950.1	"ATMAK10, putative, expressed"	Medtr8g121500.1	"ATMAK10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5809.1.S1_at	A	A1TS	POPTR_0006s22810	POPTR_0006s22810 (11)	scaffold_6:21710760-21712318(+) (11)	POPTR_0016s07950 (7)	P37107	"Signal recognition particle 54 kDa protein, chloroplastic"	AT5G03940.1	chloroplast signal recognition particle 54 kDa subunit 	LOC_Os11g05556.1	"signal recognition particle 54 kDa protein, putative, expressed"	Medtr7g127650.1	"GTP-binding signal recognition particle SRP54, G-domain "	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0006614|SRP-dependent cotranslational protein targeting to membrane||GO:0044260|cellular macromolecule metabolic process	GO:0008312|7S RNA binding||GO:0005525|GTP binding||GO:0005515|protein binding	GO:0048500|signal recognition particle
PtpAffx.581.2.S1_at	A	A1TS	POPTR_0002s06540	POPTR_0002s06540 (11)	scaffold_2:4357001-4357546(+) (11)	NA	NA	NA	AT4G09830.1	Uncharacterised conserved protein UCP009193 	LOC_Os01g40690.1	"holocarboxylase synthetase, putative, expressed"	Medtr1g124740.1	"holocarboxylase synthetase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58110.1.S1_at	A	A1MS	POPTR_0013s03630	POPTR_0013s03630 (9)	scaffold_13:2085767-2088474(+) (10)//scaffold_13:2311958-2314625(-) (10)	POPTR_0013s03390 (6)	Q6TGY8	Tetratricopeptide repeat protein 35	AT3G04830.1	Protein prenylyltransferase superfamily protein 	LOC_Os02g03470.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr7g140640.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58121.1.S1_at	A	A1TS	POPTR_0008s18200	POPTR_0008s18200 (11)	scaffold_8:12193345-12196117(+) (11)	NA	Q6P7R8	Estradiol 17-beta-dehydrogenase 12	AT1G67730.1	beta-ketoacyl reductase 1 	LOC_Os02g38440.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g102850.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.5813.1.S1_at	A	A1TS	POPTR_0001s35230	POPTR_0001s35230 (11)	scaffold_1:33518717-33519213(+) (11)	NA	P36210	"50S ribosomal protein L12-1, chloroplastic"	AT3G27830.1	ribosomal protein L12-A 	LOC_Os01g47330.1	"ribosomal protein L7/L12 C-terminal domain containing protein, expressed"	Medtr6g005720.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.58139.1.S1_at	A	A1TS	POPTR_0008s13190	POPTR_0008s13190 (11)	scaffold_8:8635413-8635972(-) (11)	NA	P17407	21 kDa protein	AT1G14890.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr8g138370.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.5817.1.S1_s_at	A	A1TS	POPTR_0005s11160	POPTR_0005s11160 (11)	scaffold_5:8098730-8099275(-) (11)	NA	Q9ZUB8	F-box protein SKIP22	AT1G23780.1	F-box family protein 	LOC_Os03g12940.3	"OsFBO13 - F-box and other domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5817.2.S1_at	A	A1TS	POPTR_0005s11150	POPTR_0005s11150 (11)	scaffold_5:8096696-8097052(-) (11)	NA	NA	NA	AT3G51325.1	RING/U-box superfamily protein 	LOC_Os04g16970.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g022720.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58195.1.S1_s_at	A	A1TS	POPTR_0010s14100	POPTR_0010s14100 (11)	scaffold_10:13793196-13793740(-) (11)	NA	P10897	Cytochrome b561	AT1G26100.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os08g29520.1	"cytochrome b561, putative, expressed"	Medtr5g069530.2	Cytochrome b561 / ferric reductase transmembrane 	NA	NA	GO:0016021|integral to membrane
PtpAffx.58214.1.S1_at	A	A1TS	POPTR_0008s02770	POPTR_0008s02770 (10)	scaffold_8:1403251-1404931(-) (10)	NA	Q0WQF7	"Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial"	AT3G52200.1	"Dihydrolipoamide acetyltransferase, long form protein "	LOC_Os06g30460.5	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.58243.1.S1_at	A	A1TS	POPTR_0008s05330	POPTR_0008s05330 (11)	scaffold_8:3099968-3100167(+) (11)	NA	NA	NA	AT3G12587.1	Oligosaccaryltransferase 	NA	NA	Medtr7g118190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5825.1.A1_at	A	A1TS	POPTR_0017s02480	POPTR_0017s02480 (11)	scaffold_17:1786920-1787415(-) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT1G66150.1	transmembrane kinase 1 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr5g085220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.5826.1.A1_at	A	A1TS	POPTR_0008s05120	POPTR_0008s05120 (11)	scaffold_8:2975309-2976037(+) (11)	NA	NA	NA	AT5G13660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 135 Blast hits to 126 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g025140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58266.1.S1_at	A	A1TS	POPTR_0015s04220	POPTR_0015s04220 (11)	scaffold_15:4277418-4280367(-) (11)	NA	Q949S9	Pre-mRNA-splicing factor SPF27 homolog	AT3G18165.1	"modifier of snc1,4 "	LOC_Os01g16010.2	"BCAS2 protein, putative, expressed"	Medtr4g155510.1	Breast carcinoma amplified sequence 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58280.1.S1_at	A	A1TS	POPTR_0016s11680	POPTR_0016s11680 (11)	scaffold_16:10880964-10882063(-) (11)	NA	NA	NA	AT2G37975.1	Yos1-like protein 	LOC_Os03g21390.1	expressed protein	Medtr4g015660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58297.1.S1_at	A	A1TS	POPTR_0008s19000	POPTR_0008s19000 (11)	scaffold_8:12965633-12966024(-) (11)	NA	Q02527	"Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase"	AT1G12990.1	"beta-1,4-N-acetylglucosaminyltransferase family protein "	LOC_Os02g38140.1	"glycosyl transferase family 17 protein, putative, expressed"	Medtr3g143490.1	"Glycosyl transferase, family 17 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003830|""beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity"""	GO:0016020|membrane
PtpAffx.5832.1.S1_a_at	A	A1TS	POPTR_0006s16640	POPTR_0006s16640 (11)	scaffold_6:14535912-14536169(+) (11)	NA	Q9ZSY8	Auxin-responsive protein IAA27	AT4G29080.1	phytochrome-associated protein 2 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122570.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.5833.1.S1_at	A	A1TS	POPTR_0015s10690	POPTR_0015s10690 (10)	scaffold_15:11544009-11544336(-) (10)	NA	O54922	Exocyst complex component 7	AT5G50380.1	exocyst subunit exo70 family protein F1 	LOC_Os04g31330.1	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr8g109240.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.58355.1.S1_at	A	A1TS	POPTR_0001s41020	POPTR_0001s41020 (11)	scaffold_1:40662091-40662556(+) (11)	NA	Q9EPI0	Xylosyltransferase 2	AT3G15350.2	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g40060.1	"glycosyltransferase family protein, putative, expressed"	Medtr2g100560.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.58358.1.S1_at	A	A1TS	POPTR_0013s01300	POPTR_0013s01300 (11)	scaffold_13:725385-726899(+) (11)	POPTR_0005s02110 (7)	O80492	Probable protein phosphatase 2C 5	AT1G09160.1	Protein phosphatase 2C family protein 	LOC_Os07g49040.1	"protein phosphotase protein, putative, expressed"	Medtr7g138020.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58364.1.S1_at	A	A1TS	POPTR_0008s20530	POPTR_0008s20530 (10)	scaffold_8:14277205-14277659(-) (10)	NA	Q8W4J2	Mitogen-activated protein kinase 16	AT5G19010.1	mitogen-activated protein kinase 16 	LOC_Os05g05160.1	"CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g026470.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.58367.1.A1_at	A	A1TS	POPTR_0004s05200	POPTR_0004s05200 (9)	scaffold_4:3953509-3956433(+) (11)	NA	Q5RBD4	Probable ATP-dependent RNA helicase DHX35	AT4G18465.1	RNA helicase family protein 	LOC_Os01g11370.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr2g018740.1	"Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.58371.1.S1_s_at	A	A1TS	POPTR_0016s13400	POPTR_0016s13400 (11)	scaffold_16:12585465-12585835(-) (11)	NA	Q9SCT4	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2	AT3G51740.1	inflorescence meristem receptor-like kinase 2 	LOC_Os03g18630.1	"receptor-like kinase RHG1, putative, expressed"	Medtr4g011440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.5838.1.A1_at	A	A1TS	POPTR_0009s09380	POPTR_0009s09380 (11)	scaffold_9:8322265-8322867(-) (11)	NA	Q54FR4	PXMP2/4 family protein 4	AT4G33905.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os12g32330.1	"peroxisomal membrane protein, putative, expressed"	Medtr7g105450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.5839.1.A1_at	A	A1MS	POPTR_0001s38150	POPTR_0001s38150 (9)	scaffold_1:37226262-37226532(-) (9)	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.5843.1.S1_at	A	A1TS	POPTR_0006s19400	POPTR_0006s19400 (10)	scaffold_6:18459951-18460741(+) (10)	NA	NA	NA	AT4G30840.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g16600.1	"WD-40 repeat protein family, putative, expressed"	Medtr8g144730.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5845.1.S1_at	A	A1TS	POPTR_0016s14950	POPTR_0016s14950 (11)	scaffold_16:14017284-14017863(-) (11)	NA	P35493	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase"	AT1G09780.1	"Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "	LOC_Os01g60190.2	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed"	Medtr7g081000.1	"Alkaline phosphatase; Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "	GO:0044282|small molecule catabolic process||GO:0044275|cellular carbohydrate catabolic process||GO:0006007|glucose catabolic process||GO:0044281|small molecule metabolic process	GO:0004619|phosphoglycerate mutase activity||GO:0030145|manganese ion binding	GO:0005737|cytoplasm
PtpAffx.58457.1.S1_s_at	A	A1TS	POPTR_0008s05750	POPTR_0008s05750 (11)	scaffold_8:3342641-3343073(+) (11)	NA	O80933	Scarecrow-like protein 9	AT2G37650.1	GRAS family transcription factor 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58457.2.S1_s_at	A	A1TS	POPTR_0008s05750	POPTR_0008s05750 (11)	scaffold_8:3341981-3342477(+) (11)	POPTR_0010s20980 (6)	O80933	Scarecrow-like protein 9	AT2G37650.1	GRAS family transcription factor 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58472.1.S1_at	A	A1MS	POPTR_0006s13390	POPTR_0006s13390 (11)	scaffold_6:10602714-10602815(-) (11)	NA	NA	NA	AT3G09670.2	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g38810.1	"PWWP domain containing protein, expressed"	Medtr2g126820.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58479.1.S1_at	A	A1TS	POPTR_0013s03170	POPTR_0013s03170 (9)	scaffold_13:1937674-1937866(+) (9)	NA	NA	NA	AT3G05010.1	"Protein of unknown function, transmembrane-40 "	LOC_Os03g54920.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58485.1.S1_at	A	A1TS	POPTR_0004s06800	POPTR_0004s06800 (10)	scaffold_4:5435808-5436084(-) (10)	NA	O81242	DNA-binding protein RHL1	AT1G48380.1	root hair initiation protein root hairless 1 (RHL1) 	LOC_Os07g07580.3	"ROOT HAIRLESS 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58488.1.S1_s_at	A	A1TS	POPTR_0006s17830	POPTR_0006s17830 (11)	scaffold_6:16046882-16048626(-) (11)	NA	NA	NA	AT2G19880.2	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os01g67870.1	expressed protein	Medtr4g159860.1	"ceramide glucosyltransferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58492.1.S1_at	A	A1TS	POPTR_0006s27910	POPTR_0006s27910 (11)	scaffold_6:25738948-25739645(-) (11)	NA	Q93ZE8	Stromal cell-derived factor 2-like protein	AT2G25110.1	stromal cell-derived factor 2-like protein precursor 	LOC_Os08g17680.1	"stromal cell-derived factor 2-like protein precursor, putative, expressed"	Medtr3g138150.1	MIR 	NA	NA	GO:0016020|membrane
PtpAffx.58511.1.S1_s_at	A	A1TS	POPTR_0001s17260	POPTR_0001s17260 (11)	scaffold_1:14078972-14080178(+) (11)	NA	NA	NA	AT3G49890.1	unknown protein; Has 27 Blast hits to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g10410.1	expressed protein	Medtr8g101560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58518.1.S1_at	A	A1TS	POPTR_0014s14900	POPTR_0014s14900 (10)	scaffold_14:10939578-10940281(-) (10)	POPTR_0002s23210 (7)	NA	NA	NA	NA	LOC_Os12g13100.1	"WW domain containing protein, expressed"	Medtr5g072600.1	hypothetical protein 	NA	GO:0005515|protein binding	NA
PtpAffx.58520.1.S1_at	A	A1MS	POPTR_0008s22050	POPTR_0008s22050 (10)	scaffold_8:16386631-16387059(+) (10)	POPTR_0008s22260 (8)	Q6S004	Kinesin-related protein 6	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g06280.1	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr8g138640.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.5853.1.A1_at	A	A1TS	POPTR_0001s06270	POPTR_0001s06270 (11)	scaffold_1:4827830-4828146(-) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039910.1	Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.58531.1.S1_at	A	A1TS	POPTR_0014s14280	POPTR_0014s14280 (10)	scaffold_14:10441457-10441856(-) (11)	NA	P50160	Sex determination protein tasselseed-2	AT3G26760.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os11g32030.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g096880.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.58533.1.S1_at	A	A1TS	POPTR_0010s21940	POPTR_0010s21940 (11)	scaffold_10:19049635-19050125(+) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079200.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.5855.1.A1_at	A	A1TS	POPTR_0012s11230	POPTR_0012s11230 (9)	scaffold_12:11764682-11765004(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5855.2.S1_a_at	A	A2TS	POPTR_0011s10880	POPTR_0012s11230 (11)//POPTR_0011s10880 (11)	scaffold_11:13445805-13446094(-) (11)//scaffold_12:11764510-11764799(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.586.2.A1_at	A	A1TS	POPTR_0018s06710	POPTR_0018s06710 (11)	scaffold_18:6759501-6760117(+) (11)	NA	P07314	Gamma-glutamyltranspeptidase 1	AT4G29210.1	gamma-glutamyl transpeptidase 4 	LOC_Os01g05810.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr6g093830.1	Gamma-glutamyltranspeptidase 	NA	GO:0003840|gamma-glutamyltransferase activity	NA
PtpAffx.58602.1.A1_s_at	A	A1TS	POPTR_0009s16530	POPTR_0009s16530 (11)	scaffold_9:12525954-12526241(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.58609.1.A1_s_at	A	A1TS	POPTR_0008s09830	POPTR_0008s09830 (11)	scaffold_8:6103209-6103952(+) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.2	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.5861.1.A1_at	A	A1TS	POPTR_0007s02960	POPTR_0007s02960 (11)	scaffold_7:1736308-1736566(+) (11)	NA	Q8S944	Dynamin-related protein 3A	AT4G33650.1	dynamin-related protein 3A 	LOC_Os01g69130.1	"dynamin family protein, putative, expressed"	Medtr2g009740.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.58619.2.A1_a_at	A	A1TS	POPTR_0010s10490	POPTR_0010s10490 (9)	scaffold_10:10992670-10993033(+) (9)	NA	Q4R380	DNA polymerase lambda	AT1G10520.1	DNA polymerase lambda (POLL) 	LOC_Os06g13020.2	"DNA polymerase lambda, putative, expressed"	Medtr5g041030.1	"BRCT; DNA nucleotidylexotransferase (TDT); DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	GO:0005622|intracellular
PtpAffx.58636.1.S1_at	A	A1TS	POPTR_0014s11520	POPTR_0014s11520 (10)	scaffold_14:8552900-8553270(+) (10)	NA	Q9ZSM8	Histone-lysine N-methyltransferase EZA1	AT4G02020.1	SET domain-containing protein 	LOC_Os03g19480.1	"SET domain containing protein, expressed"	Medtr1g106640.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58647.1.A1_a_at	A	A1TS	POPTR_0001s04150	POPTR_0001s04150 (11)	scaffold_1:3287523-3289283(+) (11)	NA	Q2G6X5	Elongation factor P	AT4G26310.1	elongation factor P (EF-P) family protein 	LOC_Os03g59160.1	"elongation factor P, putative, expressed"	Medtr3g105690.1	Elongation factor P/YeiP; Elongation factor P-like protein YeiP; ; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	NA
PtpAffx.58649.1.A1_at	A	A1TS	POPTR_0004s16530	POPTR_0004s16530 (9)	scaffold_4:16982410-16982565(+) (9)	NA	Q7FGZ2	DEAD-box ATP-dependent RNA helicase 1	AT4G15850.1	RNA helicase 1 	LOC_Os02g55260.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g085470.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.58653.1.A1_s_at	A	A1TS	POPTR_0009s03790	POPTR_0009s03790 (11)	scaffold_9:4379171-4379572(+) (11)	NA	Q9XE58	Scarecrow-like protein 14	AT1G07530.1	SCARECROW-like 14 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5866.1.A1_a_at	A	A1TS	POPTR_0014s02540	POPTR_0014s02540 (11)	scaffold_14:2120692-2120775(+) (11)	NA	Q6X7J9	WUSCHEL-related homeobox 4	AT1G46480.1	WUSCHEL related homeobox 4 	LOC_Os04g55590.1	"homeobox domain containing protein, expressed"	Medtr1g024140.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.5866.2.A1_at	A	A1MS	POPTR_0014s02540	POPTR_0014s02540 (11)	scaffold_14:2121293-2121425(+) (11)	NA	Q6X7J9	WUSCHEL-related homeobox 4	AT1G46480.1	WUSCHEL related homeobox 4 	LOC_Os04g55590.1	"homeobox domain containing protein, expressed"	Medtr1g024140.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.58664.1.S1_at	A	A1TS	POPTR_0002s13530	POPTR_0002s13530 (11)	scaffold_2:10038003-10038564(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.2	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58669.1.A1_at	A	A1TS	POPTR_0007s12690	POPTR_0007s12690 (11)	scaffold_7:12934953-12935521(+) (11)	NA	Q42404	U1 small nuclear ribonucleoprotein 70 kDa	AT3G50670.1	U1 small nuclear ribonucleoprotein-70K 	LOC_Os10g02630.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g093540.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.5867.1.A1_at	A	A1TS	POPTR_0008s20610	POPTR_0008s20610 (11)	scaffold_8:14379051-14379533(+) (11)	NA	NA	NA	AT3G23590.1	REF4-related 1 	LOC_Os07g11000.1	"structural constituent of ribosome, putative, expressed"	Medtr2g026520.1	"REF4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5868.1.A1_at	A	A1TS	POPTR_0016s06100	POPTR_0016s06100 (11)	scaffold_16:4057378-4057849(-) (11)	NA	P13240	Disease resistance response protein 206	AT1G58170.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os12g07580.1	"dirigent, putative, expressed"	Medtr7g076490.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58681.1.A1_at	A	A1TS	POPTR_0013s13670	POPTR_0013s13670 (11)	scaffold_13:14096669-14097588(-) (11)	NA	NA	NA	AT4G28260.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 50 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g35710.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58699.1.A1_s_at	A	A1TS	POPTR_0013s09500	POPTR_0013s09500 (11)	scaffold_13:9259584-9264229(-) (11)	NA	Q9ASX5	"Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic"	AT3G26580.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g31490.1	expressed protein	Medtr8g081910.1	"Tetratricopeptide TPR_2 repeat protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58709.1.A1_at	A	A1TS	POPTR_0001s33840	POPTR_0001s33840 (11)	scaffold_1:32001386-32002331(+) (11)	NA	Q8TP15	Protease HtpX homolog 2	AT3G27110.2	Peptidase family M48 family protein 	LOC_Os01g73910.2	"peptidase, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
PtpAffx.58727.1.S1_a_at	A	A1TS	POPTR_0007s04700	POPTR_0007s04700 (9)	scaffold_7:2916568-2918215(+) (9)	NA	Q5PQN1	Probable E3 ubiquitin-protein ligase HERC4	AT5G63860.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g35570.1	"Regulator of chromosome condensation domain containing protein, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5873.1.S1_at	A	A1TS	POPTR_0011s15390	POPTR_0011s15390 (11)	scaffold_11:17487020-17487580(+) (11)	NA	NA	NA	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os04g49160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58733.1.A1_s_at	A	A1TS	POPTR_0002s01480	POPTR_0002s01480 (11)	scaffold_2:777092-777748(-) (11)	NA	Q9FH04	Alcohol dehydrogenase-like 7	AT5G42250.1	Zinc-binding alcohol dehydrogenase family protein 	LOC_Os07g42924.1	"dehydrogenase, putative, expressed"	Medtr3g111430.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.58747.1.A1_at	A	A1TS	POPTR_0006s21050	POPTR_0006s21050 (11)	scaffold_6:20156379-20156878(-) (11)	NA	Q8LB33	F-box protein At3g58530	AT3G58530.1	RNI-like superfamily protein 	LOC_Os02g17990.2	"Leucine Rich Repeat family protein, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.5875.2.A1_a_at	A	A1TS	POPTR_0006s22060	POPTR_0006s22060 (11)	scaffold_6:21084179-21084671(+) (11)	NA	NA	NA	AT3G11660.1	NDR1/HIN1-like 1 	LOC_Os11g05860.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g107350.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.58750.1.A1_at	A	A1TS	POPTR_0012s07540	POPTR_0012s07540 (11)	scaffold_12:8454048-8454214(+) (11)	POPTR_0015s07980 (8)	Q6P2B1	Transportin-3	AT5G62600.1	ARM repeat superfamily protein 	LOC_Os10g33770.1	importin-beta N-terminal domain containing protein	AC233677_6.1	Exportin-1/Importin-beta-like AC233677.2 40883-35967 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.58750.1.A1_s_at	A	A2TS	POPTR_0012s07540	POPTR_0012s07540 (11)//POPTR_0015s07980 (9)	scaffold_12:8453663-8454048(+) (11)//scaffold_15:9270527-9270877(+) (9)	NA	Q6P2B1	Transportin-3	AT5G62600.1	ARM repeat superfamily protein 	LOC_Os10g33770.1	importin-beta N-terminal domain containing protein	AC233677_6.1	Exportin-1/Importin-beta-like AC233677.2 40883-35967 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.5876.1.A1_at	A	A1TS	POPTR_0019s11760	POPTR_0019s11760 (11)	scaffold_19:12988579-12989661(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58760.1.A1_at	A	A1TS	POPTR_0010s04840	POPTR_0010s04840 (11)	scaffold_10:6025293-6025821(+) (11)	NA	NA	NA	AT1G27200.1	Domain of unknown function (DUF23) 	LOC_Os08g02850.1	"zinc finger family protein, putative, expressed"	Medtr5g038040.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58772.2.A1_a_at	A	A1TS	POPTR_0001s12950	POPTR_0001s12950 (11)	scaffold_1:10048561-10050260(+) (11)	NA	Q55CU8	Random slug protein 5	AT1G01630.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g63370.1	"CRAL/TRIO domain containing protein, expressed"	Medtr3g151400.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58775.1.A1_at	A	A1TS	POPTR_0010s21680	POPTR_0010s21680 (9)	scaffold_10:18869431-18869903(-) (9)	NA	P41891	Protein gar2	AT3G55340.1	phragmoplastin interacting protein 1 	LOC_Os05g02400.1	"RNA recognition motif containing protein, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.58779.1.S1_s_at	A	A1TS	POPTR_0019s03650	POPTR_0019s03650 (11)	scaffold_19:3729022-3729834(+) (11)	NA	Q9USQ7	Meiotically up-regulated gene 71 protein	AT3G04480.1	endoribonucleases 	LOC_Os02g56565.1	"endoribonuclease, putative, expressed"	Medtr7g135060.1	Endoribonuclease L-PSP; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58784.1.S1_at	A	A1TS	POPTR_0001s08850	POPTR_0001s08850 (11)	scaffold_1:6764014-6764324(+) (11)	NA	Q9CAN3	Scarecrow-like protein 28	AT1G63100.1	GRAS family transcription factor 	LOC_Os06g03710.1	"DELLA protein SLR1, putative, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58795.1.A1_at	A	A1TA	POPTR_0009s16010	POPTR_0009s16010 (11)	scaffold_9:12258454-12258883(-) (11)	POPTR_0004s20710 (6)	Q9ZVC9	Protein FAR1-RELATED SEQUENCE 3	AT2G27110.2	FAR1-related sequence 3 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr3g111200.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.58798.1.S1_at	A	A1TS	POPTR_0006s09720	POPTR_0006s09720 (10)	scaffold_6:7147712-7148087(+) (10)	NA	O55236	mRNA-capping enzyme	AT3G09100.2	mRNA capping enzyme family protein 	LOC_Os12g09120.1	"mRNA-capping enzyme, putative, expressed"	Medtr4g012250.1	"Dual specificity protein phosphatase; mRNA capping enzyme; Nucleic acid-binding, OB-fold, subgroup "	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0004484|mRNA guanylyltransferase activity||GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.58803.1.S1_at	A	A1TS	POPTR_0001s20800	POPTR_0001s20800 (10)	scaffold_1:18996582-18997066(-) (10)	NA	Q9S746	Protein HOTHEAD	AT1G72970.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os09g19930.1	"HOTHEAD precursor, putative, expressed"	Medtr2g121260.1	ABC transporter related; GMC oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.58805.1.A1_s_at	A	A2TS	POPTR_0004s03100	POPTR_0004s03100 (11)//POPTR_0004s03140 (9)	scaffold_4:2073050-2073900(-) (11)//scaffold_4:2119299-2120158(-) (9)	NA	O81826	Probable histone H2A.3	AT4G27230.2	histone H2A 2 	LOC_Os08g33100.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr2g096610.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.58806.1.S1_at	A	A1TS	POPTR_0009s05620	POPTR_0009s05620 (10)	scaffold_9:5686277-5687532(+) (10)	NA	Q56YN3	NAD(H) kinase 1	AT3G21070.2	NAD kinase 1 	LOC_Os01g72690.1	"NAD kinase, putative, expressed"	Medtr4g104490.1	ATP-NAD/AcoX kinase 	GO:0008152|metabolic process	GO:0003951|NAD+ kinase activity	NA
PtpAffx.58827.1.S1_at	A	A1TS	POPTR_0006s12590	POPTR_0006s12590 (11)	scaffold_6:9764995-9765486(+) (11)	POPTR_0016s09680 (6)	Q9ZR72	ABC transporter B family member 1	AT2G36910.1	ATP binding cassette subfamily B1 	LOC_Os08g45030.1	"multidrug resistance protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.58828.1.S1_at	A	A1TS	POPTR_0005s12270	POPTR_0005s12270 (11)	scaffold_5:9049890-9050014(-) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT4G36520.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g44310.2	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58848.1.A1_at	A	A1TS	POPTR_0002s22180	POPTR_0002s22180 (11)	scaffold_2:18868925-18869418(+) (11)	NA	Q93WV0	Probable WRKY transcription factor 20	AT2G04880.2	zinc-dependent activator protein-1 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g101900.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.58859.1.A1_s_at	A	A1TS	POPTR_0001s05110	POPTR_0001s05110 (11)	scaffold_1:3939019-3939637(+) (11)	NA	NA	NA	AT3G57980.1	DNA-binding bromodomain-containing protein 	LOC_Os09g31454.1	"MYB family transcription factor, putative, expressed"	Medtr2g071440.1	Myb transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58868.1.A1_at	A	A1TS	POPTR_0010s12550	POPTR_0010s12550 (11)	scaffold_10:12558593-12558979(+) (11)	NA	O14197	Uncharacterized transporter C5D6.04	AT1G71090.1	Auxin efflux carrier family protein 	LOC_Os08g09190.1	"auxin efflux carrier component, putative, expressed"	Medtr5g068420.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.5888.1.A1_a_at	A	A1TS	POPTR_0010s23120	POPTR_0010s23120 (11)	scaffold_10:19790459-19790619(+) (11)	NA	Q9LZG0	Adenosine kinase 2	AT5G03300.1	adenosine kinase 2 	LOC_Os02g41590.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5888.1.A1_s_at	A	A1TS	POPTR_0010s23120	POPTR_0010s23120 (11)	scaffold_10:19789849-19790641(+) (11)	NA	Q9LZG0	Adenosine kinase 2	AT5G03300.1	adenosine kinase 2 	LOC_Os02g41590.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5888.2.A1_at	A	A1TS	POPTR_0008s03800	POPTR_0008s03800 (11)	scaffold_8:2045739-2045781(-) (11)	NA	Q9LZG0	Adenosine kinase 2	AT5G03300.1	adenosine kinase 2 	LOC_Os02g41590.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.589.1.S1_at	A	A1TS	POPTR_0017s05930	POPTR_0017s05930 (11)	scaffold_17:4581315-4584627(-) (11)//scaffold_17:4584509-4588482(-) (9)	POPTR_2318s00200 (7)//POPTR_0017s05940 (7)	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr8g138140.1	"progesterone 5-beta-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5890.1.S1_at	A	A1TS	POPTR_0004s20550	POPTR_0004s20550 (11)	scaffold_4:20058374-20058921(+) (11)	NA	Q54NC1	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr3g111130.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.5890.2.S1_a_at	A	A2TS	POPTR_0004s20550	POPTR_0004s20550 (11)//POPTR_0009s15880 (11)	scaffold_4:20056108-20056992(+) (11)//scaffold_9:12192148-12193013(+) (11)	NA	Q54NC1	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr3g111130.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.5890.2.S1_at	A	A1TS	POPTR_0004s20550	POPTR_0004s20550 (11)	scaffold_4:20056015-20057515(+) (11)	NA	Q54NC1	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr3g111130.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.58903.1.A1_at	A	A1TS	POPTR_0010s21810	POPTR_0010s21810 (11)	scaffold_10:18957144-18957667(+) (11)	NA	Q5NA18	Metal tolerance protein 5	AT2G39450.1	Cation efflux family protein 	LOC_Os01g62070.1	"cation efflux family protein, putative, expressed"	Medtr7g022810.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.5891.1.S1_at	A	A1TS	POPTR_0007s04870	POPTR_0007s04870 (9)	scaffold_7:3055436-3057502(-) (11)	NA	Q8LLE5	Filament-like plant protein (Fragment)	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os11g06910.2	"myosin heavy chain-related, putative, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58910.2.A1_a_at	A	A1MS	POPTR_0005s05640	POPTR_0005s05640 (11)	scaffold_5:3713620-3713998(-) (11)	NA	Q9FRR1	PRA1 family protein E	AT1G08770.1	prenylated RAB acceptor 1.E 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr2g121480.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58911.1.S1_at	A	A1TS	POPTR_0001s10860	POPTR_0001s10860 (10)	scaffold_1:8426762-8427295(-) (10)	NA	NA	NA	AT3G61920.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64700.1); Has 77 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr8g018700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58917.1.S1_at	A	A1TS	POPTR_0012s10490	POPTR_0012s10490 (11)	scaffold_12:11241079-11242406(-) (11)	NA	Q9SW27	Membrane-anchored ubiquitin-fold protein 3	AT4G24990.1	Ubiquitin family protein 	LOC_Os04g32270.1	"membrane-anchored ubiquitin-fold protein, putative, expressed"	Medtr7g148240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58926.1.S1_at	A	A1TS	POPTR_0002s24040	POPTR_0002s24040 (10)	scaffold_2:21507108-21508822(-) (10)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G12850.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g15040.2	"FAR1 family protein, expressed"	Medtr7g046760.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58929.1.S1_at	A	A1TS	POPTR_0005s05370	POPTR_0005s05370 (10)	scaffold_5:3549882-3550681(+) (10)	NA	Q9SQZ9	UPF0424 protein At3g04780	AT3G04780.1	Protein of unknown function (DUF1000) 	LOC_Os03g58130.1	"thioredoxin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5894.1.A1_at	A	A1TS	POPTR_0011s15890	POPTR_0011s15890 (9)	scaffold_11:17907142-17907314(-) (9)	NA	O65351	Subtilisin-like protease	AT4G20430.1	Subtilase family protein 	LOC_Os01g56320.1	"OsSub4 - Putative Subtilisin homologue, expressed"	Medtr4g137790.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA; "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.5894.1.A1_s_at	A	A1TS	POPTR_0011s15890	POPTR_0011s15890 (11)	scaffold_11:17907368-17907580(-) (11)	NA	O65351	Subtilisin-like protease	AT4G20430.1	Subtilase family protein 	LOC_Os01g56320.1	"OsSub4 - Putative Subtilisin homologue, expressed"	Medtr4g137790.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA; "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.58958.1.A1_at	A	A1MS	POPTR_0004s09680	POPTR_0004s09680 (11)	scaffold_4:8195109-8195439(-) (11)	NA	Q39208	Delta(7)-sterol-C5(6)-desaturase 1	AT3G02580.1	sterol 1 	LOC_Os01g04260.1	"fatty acid hydroxylase, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.58971.1.S1_at	A	A1TS	POPTR_0001s45760	POPTR_0001s45760 (11)	scaffold_1:46293665-46295087(-) (11)	NA	NA	NA	AT1G73940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g63550.1	expressed protein	Medtr5g104930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58991.1.S1_at	A	A1TS	POPTR_0019s01580	POPTR_0019s01580 (11)	scaffold_19:1404182-1404862(+) (11)	NA	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G63710.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g49620.5	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr4g144240.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.590.1.S1_at	A	A1TS	POPTR_0001s11770	POPTR_0001s11770 (11)	scaffold_1:9130809-9131161(-) (11)	NA	Q40479	Ethylene-responsive transcription factor 2	AT4G17500.1	ethylene responsive element binding factor 1 	LOC_Os02g43790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr8g105160.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.59002.1.S1_s_at	A	A1TS	POPTR_0019s05050	POPTR_0019s05050 (11)	scaffold_19:5270156-5270603(-) (11)	NA	Q43314	Glutamate dehydrogenase 1	AT5G18170.1	glutamate dehydrogenase 1 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.59003.1.S1_at	A	A1TS	POPTR_0009s05550	POPTR_0009s05550 (11)	scaffold_9:5631033-5631443(+) (11)	NA	B5DGI7	RNA-binding protein 8A	AT1G51510.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os05g04850.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g008930.1	"RNA-binding protein 8A, putative "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.5901.1.S1_at	A	A1TS	POPTR_0002s19640	POPTR_0002s19640 (11)	scaffold_2:15583526-15584019(+) (11)	NA	NA	NA	AT2G47360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02570.1); Has 58 Blast hits to 55 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g133040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5902.1.S1_s_at	A	A1TS	POPTR_0001s38090	POPTR_0001s38090 (11)	scaffold_1:37132164-37132643(+) (11)	NA	Q9FVJ3	ADP-ribosylation factor GTPase-activating protein AGD12	AT4G21160.4	Calcium-dependent ARF-type GTPase activating protein family 	LOC_Os06g40704.3	"stromal membrane-associated protein, putative, expressed"	Medtr4g136810.1	C2; Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.59020.1.A1_at	A	A1MS	POPTR_0004s01360	POPTR_0004s01360 (9)	scaffold_4:750807-751642(+) (9)	NA	NA	NA	AT1G11740.1	ankyrin repeat family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59025.1.S1_at	A	A1TS	POPTR_0019s07980	POPTR_0019s07980 (11)	scaffold_19:9280376-9280938(+) (11)	NA	NA	NA	AT1G65320.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os01g69090.1	"CBS domain-containing protein, putative, expressed"	Medtr7g089400.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59029.1.S1_at	A	A1TS	POPTR_0008s20770	POPTR_0008s20770 (9)	scaffold_8:14770562-14770693(+) (9)	NA	P24805	Stem-specific protein TSJT1	AT5G19140.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os12g05050.1	"stem-specific protein TSJT1, putative, expressed"	AC233674_1.1	"Stem-specific protein TSJT1, related AC233674.1 2329-1 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5903.1.A1_a_at	A	A1TS	POPTR_0002s23730	POPTR_0002s23730 (11)	scaffold_2:21255359-21255735(+) (11)	NA	P35694	Brassinosteroid-regulated protein BRU1	AT3G23730.1	xyloglucan endotransglucosylase/hydrolase 16 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr3g104510.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.5903.1.A1_x_at	A	A1TS	POPTR_0002s23730	POPTR_0002s23730 (11)	scaffold_2:21255385-21255862(+) (11)	NA	P35694	Brassinosteroid-regulated protein BRU1	AT3G23730.1	xyloglucan endotransglucosylase/hydrolase 16 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr3g104510.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.59037.1.S1_at	A	A1TS	POPTR_0010s01910	POPTR_0010s01910 (10)	scaffold_10:2128559-2129059(+) (10)	NA	O78328	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT4G15560.1	Deoxyxylulose-5-phosphate synthase 	LOC_Os05g33840.1	"transketolase, putative, expressed"	Medtr8g139810.1	"Transketolase, C-terminal-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.5904.1.A1_at	A	A1TS	POPTR_0006s20810	POPTR_0006s20810 (11)	scaffold_6:19822345-19822661(+) (11)	NA	Q8GUK7	E3 ubiquitin-protein ligase RMA3	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os08g06510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5904.2.S1_at	A	A1TS	POPTR_0016s05870	POPTR_0016s05870 (9)	scaffold_16:3816676-3816871(+) (9)	NA	Q8GUK7	E3 ubiquitin-protein ligase RMA3	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os05g39380.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5904.3.S1_s_at	A	A1TS	POPTR_0006s20810	POPTR_0006s20810 (11)	scaffold_6:19821200-19821599(+) (11)	NA	Q8GUK7	E3 ubiquitin-protein ligase RMA3	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os08g06510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5905.1.S1_a_at	A	A1TS	POPTR_0004s09820	POPTR_0004s09820 (11)	scaffold_4:8344745-8344840(+) (11)	NA	Q3SZI0	Mannose-6-phosphate isomerase	AT1G67070.1	"Mannose-6-phosphate isomerase, type I "	LOC_Os01g03710.1	"mannose-6-phosphate isomerase, putative, expressed"	AC233656_29.1	"Mannose-6-phosphate isomerase, type I AC233656.1 117027-112130 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	GO:0004476|mannose-6-phosphate isomerase activity||GO:0008270|zinc ion binding	NA
PtpAffx.59055.1.A1_at	A	A1TS	POPTR_0004s02870	POPTR_0004s02870 (11)	scaffold_4:1914535-1914768(-) (11)	NA	Q94JL3	Transcription factor bHLH112	AT1G61660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g42180.1	"ethylene-responsive protein related, putative"	Medtr2g011150.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.5906.1.A1_at	A	A1MS	POPTR_0005s25780	POPTR_0005s25780 (11)	scaffold_5:23968371-23969270(+) (11)	NA	NA	NA	AT5G15320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g097560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5906.4.A1_at	A	A1TS	POPTR_0002s02650	POPTR_0002s02650 (11)	scaffold_2:1566629-1566690(-) (11)	NA	NA	NA	AT5G15320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g097560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5906.7.S1_at	A	A1MS	POPTR_0002s02650	POPTR_0002s02650 (11)	scaffold_2:1566077-1566251(-) (11)	NA	NA	NA	AT5G15320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g097560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5906.8.A1_at	A	A1TS	POPTR_0005s25780	POPTR_0005s25780 (11)	scaffold_5:23968651-23970418(+) (11)	NA	NA	NA	AT5G15320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g097560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59060.1.S1_at	A	A2TS	POPTR_0001s45390	POPTR_0001s45400 (10)//POPTR_0001s45390 (10)	scaffold_1:45880486-45888061(+) (11)//scaffold_1:45887610-45887978(+) (9)//scaffold_1750:3318-3686(+) (10)	NA	NA	NA	AT1G32928.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59062.1.A1_at	A	A1TS	POPTR_0001s45210	POPTR_0001s45210 (11)	scaffold_1:45647480-45647978(+) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140400.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.5907.1.A1_at	A	A1TS	POPTR_0010s24820	POPTR_0010s24820 (11)	scaffold_10:20821927-20822910(-) (11)	NA	O54922	Exocyst complex component 7	AT5G03540.1	exocyst subunit exo70 family protein A1 	LOC_Os11g05880.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr1g112310.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.5908.1.S1_at	A	A1TS	POPTR_0010s05470	POPTR_0010s05470 (11)	scaffold_10:6940915-6941382(-) (11)	NA	Q9BXS5	AP-1 complex subunit mu-1	AT1G60780.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os01g50770.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g034870.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.59090.1.A1_at	A	A1TS	POPTR_0006s23140	POPTR_0006s23140 (11)	scaffold_6:21988235-21988681(+) (11)	POPTR_0016s08220 (7)	Q8BUV8	Protein GPR107	AT5G18520.1	Lung seven transmembrane receptor family protein 	LOC_Os01g61970.1	"Lung seven transmembrane receptor domain containing protein, putative, expressed"	Medtr7g120530.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.59090.2.A1_a_at	A	A1TS	POPTR_0006s23140	POPTR_0006s23140 (11)	scaffold_6:21987614-21988735(+) (11)	NA	Q8BUV8	Protein GPR107	AT5G18520.1	Lung seven transmembrane receptor family protein 	LOC_Os01g61970.1	"Lung seven transmembrane receptor domain containing protein, putative, expressed"	Medtr7g120530.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
PtpAffx.59126.1.S1_s_at	A	A1TS	POPTR_0006s29140	POPTR_0006s29140 (11)	scaffold_6:26600522-26600661(-) (11)	NA	Q9SVG9	Calcium-binding protein CML42	AT4G20780.1	calmodulin like 42 	LOC_Os03g21380.2	"OsCML27 - Calmodulin-related calcium sensor protein, expressed"	Medtr3g132850.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5913.1.S1_at	A	A1TS	POPTR_0003s17250	POPTR_0003s17250 (11)	scaffold_3:16668138-16668507(+) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.59140.1.S1_a_at	A	A1TS	POPTR_0010s06845	POPTR_0010s06845 (11)	scaffold_10:8109834-8113467(+) (11)	NA	Q9CR64	Protein kish-A	AT5G20165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g16255.1	"transmembrane protein 167 precursor, putative, expressed"	Medtr3g103570.1	Protein of unknown function DUF1242 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59140.2.S1_a_at	A	A1TS	POPTR_0008s17680	POPTR_0008s17680 (11)	scaffold_8:11870810-11872053(-) (11)	NA	Q9CR64	Protein kish-A	AT5G20165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g16255.1	"transmembrane protein 167 precursor, putative, expressed"	Medtr3g103570.1	Protein of unknown function DUF1242 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59140.2.S1_at	A	A1TS	POPTR_0008s17680	POPTR_0008s17680 (11)	scaffold_8:11870911-11871095(-) (11)	NA	Q9CR64	Protein kish-A	AT5G20165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g16255.1	"transmembrane protein 167 precursor, putative, expressed"	Medtr3g103570.1	Protein of unknown function DUF1242 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59140.4.A1_at	A	A1TS	POPTR_0008s17680	POPTR_0008s17680 (11)	scaffold_8:11870596-11870893(-) (11)	NA	Q9CR64	Protein kish-A	AT5G20165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g16255.1	"transmembrane protein 167 precursor, putative, expressed"	Medtr3g103570.1	Protein of unknown function DUF1242 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5915.1.A1_at	A	A1TS	POPTR_0005s16680	POPTR_0005s16680 (11)	scaffold_5:13680746-13680862(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT1G36070.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g26870.1	"WD-40 repeat family protein, putative, expressed"	CU651566_11.1	"Uncharacterized WD repeat-containing protein C2A9.03, related CU651566.9 58826-64265 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5915.2.A1_at	A	A1TS	POPTR_0002s09470	POPTR_0002s09470 (11)	scaffold_2:6758453-6758948(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT1G78070.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g26870.1	"WD-40 repeat family protein, putative, expressed"	CU651566_11.1	"Uncharacterized WD repeat-containing protein C2A9.03, related CU651566.9 58826-64265 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59155.1.S1_s_at	A	A1TS	POPTR_0017s06650	POPTR_0017s06650 (11)	scaffold_17:5097787-5099089(-) (11)	NA	Q11011	Puromycin-sensitive aminopeptidase	AT4G33090.1	aminopeptidase M1 	LOC_Os08g30810.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.59171.1.A1_at	A	A1MS	POPTR_0001s01830	POPTR_0001s01830 (11)	scaffold_1:1326311-1326850(-) (11)	NA	Q96ST2	Protein IWS1 homolog	AT1G32130.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os01g05420.1	"IWS1 C-terminus family protein, putative, expressed"	Medtr5g028170.1	"IWS1, C-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.59172.1.S1_s_at	A	A1TS	POPTR_0002s05120	POPTR_0002s05120 (11)	scaffold_2:3324685-3325225(+) (11)	NA	Q9ZQI8	Non-specific lipid-transfer protein-like protein At2g13820	AT2G48130.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g07930.1	"LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g007090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5919.1.A1_a_at	A	A1TS	POPTR_0008s05770	POPTR_0008s05770 (11)	scaffold_8:3346972-3347798(-) (11)	NA	Q8LPL5	Protein FIZZY-RELATED 3	AT5G13840.2	FIZZY-related 3 	LOC_Os01g74146.1	"WD repeat-containing protein, putative, expressed"	Medtr5g008110.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5920.1.A1_at	A	A1TS	POPTR_0011s09990	POPTR_0011s09990 (11)	scaffold_11:12437186-12437280(+) (11)//scaffold_174:15336-15430(-) (11)	NA	NA	NA	AT3G15095.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9762 Blast hits to 6439 proteins in 764 species: Archae - 77; Bacteria - 1339; Metazoa - 3211; Fungi - 718; Plants - 437; Viruses - 131; Other Eukaryotes - 3849 (source: NCBI BLink). 	LOC_Os06g24540.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5923.1.S1_at	A	A1TS	POPTR_0003s13890	POPTR_0003s13890 (11)	scaffold_3:14119618-14120163(-) (11)	NA	A7PZL3	Probable polygalacturonase	AT4G23820.1	Pectin lyase-like superfamily protein 	LOC_Os02g15690.1	"polygalacturonase, putative, expressed"	Medtr5g097260.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.5924.1.A1_at	A	A1TS	POPTR_0010s17620	POPTR_0010s17620 (11)	scaffold_10:16132663-16133198(+) (11)	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT2G02970.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os08g33850.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g044090.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.59240.1.S1_at	A	A1TS	POPTR_0005s21310	POPTR_0005s21310 (11)	scaffold_5:20424725-20424854(+) (11)	NA	P16313	Nodulin-21	AT3G43660.1	Vacuolar iron transporter (VIT) family protein 	LOC_Os04g59020.1	"integral membrane protein, putative, expressed"	Medtr1g125450.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59240.1.S1_s_at	A	A1TS	POPTR_0005s21310	POPTR_0005s21310 (11)	scaffold_5:20424385-20424699(+) (11)	NA	P16313	Nodulin-21	AT3G43660.1	Vacuolar iron transporter (VIT) family protein 	LOC_Os04g59020.1	"integral membrane protein, putative, expressed"	Medtr1g125450.1	"Protein of unknown function DUF125, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5929.1.A1_at	A	A1TS	POPTR_0002s16970	POPTR_0002s16970 (10)	scaffold_2:12738792-12739191(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5931.1.A1_a_at	A	A1TS	POPTR_0010s00640	POPTR_0010s00640 (11)	scaffold_10:338411-338947(-) (11)	NA	NA	NA	AT1G48320.1	Thioesterase superfamily protein 	LOC_Os03g48480.1	"thioesterase family protein, putative, expressed"	Medtr2g052490.1	Phenylacetic acid degradation-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5931.2.S1_a_at	A	A1TS	POPTR_0010s00620	POPTR_0010s00620 (11)	scaffold_10:331747-331803(-) (11)	NA	NA	NA	AT1G48320.1	Thioesterase superfamily protein 	LOC_Os03g48480.1	"thioesterase family protein, putative, expressed"	Medtr2g052490.1	Phenylacetic acid degradation-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59310.1.S1_at	A	A1TS	POPTR_0008s16640	POPTR_0008s16640 (11)	scaffold_8:11178920-11179109(-) (11)	NA	Q8RWL2	Calcium-dependent protein kinase 29	AT1G08650.1	phosphoenolpyruvate carboxylase kinase 1 	LOC_Os02g56310.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g093530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.59311.1.A1_at	A	A1TS	POPTR_0012s06320	POPTR_0012s06320 (10)	scaffold_12:6653374-6654288(+) (10)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.59312.1.A1_at	A	A1TS	POPTR_0002s19230	POPTR_0002s19230 (11)	scaffold_2:15156414-15157315(-) (11)	NA	O15488	Glycogenin-2	AT2G47180.1	galactinol synthase 1 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.59348.1.S1_at	A	A1TS	POPTR_0003s06670	POPTR_0003s06670 (11)	scaffold_3:8197926-8198571(+) (11)	NA	Q9C9E3	Protein TIFY 11B	AT1G72450.1	jasmonate-zim-domain protein 6 	LOC_Os07g42370.2	"zinc-finger protein, putative, expressed"	Medtr2g049880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59361.1.A1_s_at	A	A1TS	POPTR_0012s09750	POPTR_0012s09750 (11)	scaffold_12:10684697-10687629(+) (11)	NA	Q5R7Z6	Asparagine-linked glycosylation protein 11 homolog	AT2G40190.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os12g39340.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC235758_13.1	"Glycosyl transferase, group 1 AC235758.1 63451-61484 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
PtpAffx.59364.1.S1_s_at	A	A1TS	POPTR_0009s16200	POPTR_0009s16200 (11)	scaffold_9:12370411-12371686(-) (11)	NA	Q6NZ07	Nicalin-1	AT3G44330.1	"INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). "	LOC_Os08g01180.1	"nicalin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5937.1.S1_at	A	A1TS	POPTR_0018s08810	POPTR_0018s08810 (11)	scaffold_18:9732401-9732687(-) (11)	NA	Q9WTZ3	Membrane-bound transcription factor site-1 protease	AT5G19660.1	SITE-1 protease 	LOC_Os06g06810.1	"OsSub49 - Putative Subtilisin homologue, expressed"	Medtr6g099740.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.5940.1.A1_at	A	A1TS	POPTR_0018s11680	POPTR_0018s11680 (11)	scaffold_18:12324362-12324781(-) (11)	NA	Q9FPS4	Ubiquitin carboxyl-terminal hydrolase 23	AT5G57990.1	ubiquitin-specific protease 23 	LOC_Os06g08530.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g145470.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.59400.1.A1_s_at	A	A1TS	POPTR_0001s01510	POPTR_0001s01510 (11)	scaffold_1:1137785-1138375(+) (11)	NA	NA	NA	AT4G19040.1	ENHANCED DISEASE RESISTANCE 2 	LOC_Os10g31770.1	"START domain containing protein, expressed"	Medtr5g027400.2	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59404.1.S1_at	A	A1TS	POPTR_0005s24780	POPTR_0005s24780 (11)	scaffold_5:23225296-23226067(+) (11)	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.59414.1.A1_s_at	A	A1TS	POPTR_0011s09450	POPTR_0011s09450 (11)	scaffold_11:11717738-11718260(+) (11)	NA	Q6H6V4	Auxin response factor 6	AT1G30330.1	auxin response factor 6 	LOC_Os02g06910.1	"auxin response factor 6, putative, expressed"	Medtr2g022250.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.5943.1.A1_at	A	A1TS	POPTR_0006s19580	POPTR_0006s19580 (11)	scaffold_6:18625978-18626536(-) (11)	NA	Q9SWW6	Cellulose synthase A catalytic subunit 7 [UDP-forming]	AT5G17420.1	Cellulose synthase family protein 	LOC_Os09g25490.1	"CESA9 - cellulose synthase, expressed"	Medtr8g145000.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.59463.1.A1_at	A	A1TS	POPTR_0013s13360	POPTR_0013s13360 (10)	scaffold_13:13861465-13862446(-) (10)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.59464.1.A1_at	A	A8TS	POPTR_0019s12850	POPTR_0104s00230 (11)//POPTR_0086s00270 (11)//POPTR_0019s12850 (11)//POPTR_0144s00230 (10)//POPTR_0144s00240 (10)//POPTR_0019s12420 (10)//POPTR_0086s00230 (10)//POPTR_0104s00200 (9)	scaffold_104:1782-2927(-) (10)//scaffold_104:30135-31159(-) (11)//scaffold_144:26876-27916(+) (10)//scaffold_144:45092-46091(+) (10)//scaffold_19:13463803-13464855(-) (10)//scaffold_19:13806762-13807797(+) (11)//scaffold_19:13874996-13876039(+) (9)//scaffold_86:3998-5037(+) (9)//scaffold_86:38103-39141(+) (10)//scaffold_86:61002-62043(+) (10)	POPTR_0086s00200 (8)//POPTR_0019s12400 (7)	Q9LIG2	Receptor-like protein kinase At3g21340	AT1G51850.1	Leucine-rich repeat protein kinase family protein 	LOC_Os05g44930.1	"receptor-like protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.595.1.S1_s_at	A	A1TS	POPTR_0006s28990	POPTR_0006s28990 (11)	scaffold_6:26485748-26485901(-) (11)	NA	Q03194	Plasma membrane ATPase 4	AT2G24520.1	H(+)-ATPase 5 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.595.2.S1_a_at	A	A1TS	POPTR_0018s03700	POPTR_0018s03700 (9)	scaffold_18:3156361-3156456(+) (9)	NA	Q03194	Plasma membrane ATPase 4	AT2G24520.1	H(+)-ATPase 5 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.595.3.S1_at	A	A1TS	POPTR_0018s03700	POPTR_0018s03700 (11)	scaffold_18:3157087-3157647(+) (11)	NA	Q03194	Plasma membrane ATPase 4	AT2G24520.1	H(+)-ATPase 5 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.595.4.S1_s_at	A	A1TS	POPTR_0006s28990	POPTR_0006s28990 (11)	scaffold_6:26485678-26485949(-) (11)	NA	Q03194	Plasma membrane ATPase 4	AT2G24520.1	H(+)-ATPase 5 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.5950.1.S1_s_at	A	A1TS	POPTR_0013s03190	POPTR_0013s03190 (11)	scaffold_13:1954002-1954423(+) (11)	NA	Q8VZ95	Vesicle-associated protein 1-1	AT3G60600.1	vesicle associated protein 	LOC_Os04g45190.1	"MSP domain containing protein, expressed"	Medtr8g139690.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.59502.1.A1_s_at	A	A1TS	POPTR_0017s04760	POPTR_0017s04760 (11)	scaffold_17:3653310-3653844(-) (11)	NA	NA	NA	AT5G44180.1	Homeodomain-like transcriptional regulator 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr4g108880.1	hypothetical protein 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.5951.1.S1_at	A	A1TS	POPTR_0005s04730	POPTR_0005s04730 (11)	scaffold_5:3177483-3177925(+) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT4G12300.1	"cytochrome P450, family 706, subfamily A, polypeptide 4 "	LOC_Os08g43440.1	"cytochrome P450, putative, expressed"	Medtr3g169570.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.59515.1.S1_s_at	A	A1TS	POPTR_0001s35310	POPTR_0001s35310 (10)	scaffold_1:33652451-33652998(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59516.1.S1_at	A	A1TS	POPTR_0018s00580	POPTR_0018s00580 (10)	scaffold_18:504694-505221(-) (10)	NA	NA	NA	AT5G11530.1	embryonic flower 1 (EMF1) 	NA	NA	AC225507_17.1	hypothetical protein AC225507.11 68679-65006 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59525.1.S1_at	A	A1MS	POPTR_0025s00390	POPTR_0025s00390 (11)	scaffold_25:148036-148547(-) (11)	NA	Q52T38	S-acyltransferase TIP1	AT5G20350.1	Ankyrin repeat family protein with DHHC zinc finger domain 	LOC_Os06g43680.1	"palmitoyltransferase TIP1, putative, expressed"	Medtr8g122240.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.59526.1.A1_at	A	A1TS	POPTR_0014s04220	POPTR_0014s04220 (11)	scaffold_14:3318213-3318671(-) (11)	NA	NA	NA	AT1G19360.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os07g39840.1	expressed protein	Medtr8g081860.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59531.1.S1_at	A	A1TS	POPTR_0010s23550	POPTR_0010s23550 (10)	scaffold_10:20091987-20092443(+) (10)	NA	P49311	Glycine-rich RNA-binding protein GRP2A	AT5G04280.1	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 	LOC_Os07g08960.1	"RNA recognition motif containing protein, expressed"	Medtr2g008300.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.59548.1.S1_at	A	A2TS	POPTR_0008s19210	POPTR_0010s05440 (11)//POPTR_0008s19210 (11)	scaffold_10:6904627-6905136(+) (11)//scaffold_8:13158554-13159057(-) (11)	NA	P04635	Lipase	AT1G10740.4	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33820.1	"lipase, putative, expressed"	Medtr5g034920.1	"lipase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59556.1.S1_at	A	A1TS	POPTR_0010s25040	POPTR_0010s25040 (9)	scaffold_10:20916270-20917002(-) (9)	NA	NA	NA	AT4G26190.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g01850.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g071320.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59571.1.S1_at	A	A1TS	POPTR_0005s06500	POPTR_0005s06500 (10)	scaffold_5:4336247-4337344(-) (10)	NA	Q54M22	"2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial"	AT5G09300.1	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein 	LOC_Os12g08260.2	"dehydrogenase E1 component domain containing protein, expressed"	Medtr3g143240.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.59578.1.S1_s_at	A	A1TS	POPTR_0014s07060	POPTR_0014s07060 (10)	scaffold_14:5334039-5334546(+) (10)	NA	O65351	Subtilisin-like protease	AT1G01900.1	subtilase family protein 	LOC_Os04g48416.1	"OsSub45 - Putative Subtilisin homologue, expressed"	Medtr7g083510.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.5959.1.A1_at	A	A1TS	POPTR_0008s08330	POPTR_0008s08330 (11)	scaffold_8:5174397-5176307(+) (11)	NA	Q8BZJ7	DCN1-like protein 2	AT3G12760.1	"CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). "	LOC_Os06g12690.1	"DCN1-like protein 2, putative, expressed"	Medtr7g010140.1	Protein of unknown function DUF298 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59594.1.S1_s_at	A	A1TS	POPTR_0004s24090	POPTR_0004s24090 (11)	scaffold_4:22835010-22835534(-) (11)	NA	P57108	Glutathione S-transferase zeta class	AT2G02390.1	glutathione S-transferase zeta 1 	LOC_Os02g35590.2	"glutathione S-transferase, putative, expressed"	Medtr5g098100.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5960.1.A1_a_at	A	A1TS	POPTR_0015s06880	POPTR_0015s06880 (11)	scaffold_15:7903353-7903654(-) (11)//scaffold_508:537-839(+) (10)	NA	Q9SD84	"Glucan endo-1,3-beta-glucosidase-like protein 3"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59601.1.S1_a_at	A	A1TS	POPTR_0011s15960	POPTR_0011s15960 (11)	scaffold_11:17954751-17955154(-) (11)	NA	Q9SA77	UDP-arabinose 4-epimerase 1	AT1G30620.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g04690.2	"UDP-arabinose 4-epimerase 1, putative, expressed"	Medtr4g137730.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.5963.1.S1_at	A	A1TS	POPTR_0018s11530	POPTR_0018s11530 (9)	scaffold_18:12229397-12229574(-) (9)	NA	Q8RWS9	Probable cyclic nucleotide-gated ion channel 5	AT5G57940.2	cyclic nucleotide gated channel 5 	LOC_Os04g55080.1	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.5963.1.S1_s_at	A	A1TS	POPTR_0018s11530	POPTR_0018s11530 (11)	scaffold_18:12229588-12229934(-) (11)	NA	Q8RWS9	Probable cyclic nucleotide-gated ion channel 5	AT5G57940.2	cyclic nucleotide gated channel 5 	LOC_Os04g55080.1	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.59631.1.S1_s_at	A	A1TS	POPTR_0009s15010	POPTR_0009s15010 (11)	scaffold_9:11648768-11649306(-) (11)	NA	P27880	18.2 kDa class I heat shock protein	AT2G29500.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067320.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59633.1.S1_at	A	A1TS	POPTR_0024s00700	POPTR_0024s00700 (11)	scaffold_24:421731-423472(+) (11)	NA	NA	NA	AT5G19590.1	"Protein of unknown function, DUF538 "	LOC_Os01g41220.2	"DUF538 domain containing protein, putative, expressed"	Medtr1g108140.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59636.1.S1_at	A	A1TS	POPTR_0005s20060	POPTR_0005s20060 (11)	scaffold_5:19078204-19078775(+) (11)	NA	Q9MBA1	"Chlorophyllide a oxygenase, chloroplastic"	AT1G44446.1	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain 	LOC_Os10g41780.1	"chlorophyllide a oxygenase, chloroplast precursor, putative, expressed"	Medtr1g037120.1	"Aminotransferase, class-II; Rieske [2Fe-2S] region "	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.59655.1.S1_at	A	A1TS	POPTR_0001s38880	POPTR_0001s38880 (9)	scaffold_1:38117251-38117745(-) (9)	NA	Q93XX4	C2 domain-containing protein At1g53590	AT1G53590.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g20970.1	"C2 domain containing protein, putative, expressed"	Medtr1g031480.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59663.1.A1_s_at	A	A1TS	POPTR_0014s01890	POPTR_0014s01890 (11)	scaffold_14:1724512-1726048(+) (11)	NA	Q9STX1	Acyl-CoA-binding domain-containing protein 3	AT4G24230.5	acyl-CoA-binding domain 3 	LOC_Os03g14000.1	"acyl CoA binding protein, putative, expressed"	NA	NA	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.59667.1.A1_at	A	A1TS	POPTR_0010s23765	POPTR_0010s23765 (11)	scaffold_10:20252050-20252446(-) (11)	NA	NA	NA	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g024610.1	TIR; Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59670.1.A1_at	A	A1TS	POPTR_0005s17660	POPTR_0005s17660 (11)	scaffold_5:15281617-15282077(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g37700.1	expressed protein	Medtr5g074510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59676.1.S1_at	A	A1TS	POPTR_0003s15880	POPTR_0003s15880 (11)	scaffold_3:15558499-15559019(-) (11)	NA	Q9FTZ2	"Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase"	AT1G20050.1	"C-8,7 sterol isomerase "	LOC_Os01g01369.1	"3-beta-hydroxysteroid-Delta-isomerase, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0016125|sterol metabolic process||GO:0006629|lipid metabolic process	GO:0047750|cholestenol delta-isomerase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.5968.1.S1_a_at	A	A1TS	POPTR_0002s17070	POPTR_0002s17070 (11)	scaffold_2:12834170-12834676(-) (11)	NA	Q84MC7	Abscisic acid receptor PYL9	AT1G01360.1	regulatory component of ABA receptor 1 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5968.2.S1_s_at	A	A1TS	POPTR_0014s09280	POPTR_0014s09280 (11)	scaffold_14:6882292-6884107(-) (11)	NA	Q84MC7	Abscisic acid receptor PYL9	AT1G01360.1	regulatory component of ABA receptor 1 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5968.4.S1_a_at	A	A1TS	POPTR_0017s09580	POPTR_0017s09580 (9)	scaffold_17:8205883-8206145(-) (9)	NA	NA	NA	AT5G41070.1	dsRNA-binding protein 5 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.59699.2.A1_a_at	A	A1TS	POPTR_0014s08150	POPTR_0014s08150 (10)	scaffold_14:6052574-6053994(+) (10)	POPTR_0002s16200 (7)	Q8GX78	"Probable anion transporter 2, chloroplastic"	AT4G00370.1	Major facilitator superfamily protein 	LOC_Os09g39680.1	"transporter, major facilitator family, putative, expressed"	Medtr8g031920.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59718.1.S1_at	A	A1TS	POPTR_0007s11570	POPTR_0007s11570 (9)	scaffold_7:11953684-11954224(-) (9)	NA	O64837	Reticulon-like protein B13	AT2G23640.1	Reticulan like protein B13 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr5g018250.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.59729.1.S1_at	A	A1TS	POPTR_0009s09350	POPTR_0009s09350 (9)	scaffold_9:8311167-8311476(+) (9)	NA	P37034	Uncharacterized transporter lpg1691	AT3G19553.1	Amino acid permease family protein 	LOC_Os03g37984.5	"amino acid permease family protein, putative, expressed"	Medtr5g005210.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5973.1.S1_at	A	A1TS	POPTR_0003s13270	POPTR_0003s13270 (11)	scaffold_3:13651299-13651648(-) (11)	NA	NA	NA	AT4G11270.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g22550.1	"transducin family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59736.1.S1_at	A	A1TS	POPTR_0010s06910	POPTR_0010s06910 (10)	scaffold_10:8147149-8147500(-) (10)	NA	Q9CAG8	F-box/kelch-repeat protein At1g67480	AT1G67480.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g30210.2	"OsFBK7 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59746.1.S1_at	A	A1TS	POPTR_0002s08440	POPTR_0002s08440 (11)	scaffold_2:5882664-5883125(-) (11)	NA	NA	NA	AT1G21830.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g59420.2	expressed protein	Medtr3g100850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59806.1.A1_at	A	A1TS	POPTR_0001s29170	POPTR_0001s29170 (11)	scaffold_1:27935774-27936303(+) (11)	NA	Q08276	"Heat shock 70 kDa protein, mitochondrial"	AT5G09600.3	succinate dehydrogenase 3-1 	LOC_Os02g53420.1	"DnaK family protein, putative, expressed"	Medtr2g010100.1	Chaperone DnaK 	GO:0006099|tricarboxylic acid cycle	GO:0000104|succinate dehydrogenase activity||GO:0009055|electron carrier activity	GO:0016020|membrane
PtpAffx.59809.1.S1_at	A	A1TS	POPTR_0009s06810	POPTR_0009s06810 (11)	scaffold_9:6512176-6512505(+) (11)	NA	NA	NA	AT2G41905.1	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5981.1.A1_at	A	A1TA	POPTR_0015s09260	POPTR_0015s09260 (10)	scaffold_15:10504765-10504948(+) (10)	NA	P59837	Retinol dehydrogenase 12	AT5G50130.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g03830.1	"retinol dehydrogenase, putative, expressed"	Medtr3g114440.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.5982.1.S1_at	A	A1TS	POPTR_0013s13400	POPTR_0013s13400 (11)	scaffold_13:13893248-13893699(+) (11)	NA	Q7Y223	"Mannan endo-1,4-beta-mannosidase 2"	AT2G20680.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g54300.1	OsMan02 - Endo-Beta-Mannanase	Medtr4g107960.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59823.1.S1_a_at	A	A1TS	POPTR_0001s29940	POPTR_0001s29940 (11)	scaffold_1:28511126-28511901(+) (11)	NA	NA	NA	AT1G49975.1	"INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g52130.1	expressed protein	Medtr3g010060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5985.1.A1_at	A	A1TS	POPTR_0001s10250	POPTR_0001s10250 (11)	scaffold_1:7945759-7946124(-) (11)	NA	A7HZ93	Translation initiation factor IF-2	AT4G11160.1	"Translation initiation factor 2, small GTP-binding protein "	LOC_Os09g34010.1	expressed protein	Medtr5g033550.1	"Elongation factor Tu, domain 2 "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0005622|intracellular
PtpAffx.59850.1.S1_at	A	A1TS	POPTR_0006s04100	POPTR_0006s04100 (11)	scaffold_6:2762551-2763778(+) (11)	NA	Q04708	Pyrroline-5-carboxylate reductase	AT5G14800.1	pyrroline-5- carboxylate (P5C) reductase 	LOC_Os01g71990.1	"pyrroline-5-carboxylate reductase, putative, expressed"	Medtr7g107180.1	"Delta 1-pyrroline-5-carboxylate reductase; NADP oxidoreductase, coenzyme F420-dependent "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59867.2.S1_s_at	A	A2TS	POPTR_0012s07100	POPTR_1017s00200 (11)//POPTR_0012s07100 (11)	scaffold_1017:6653-7352(-) (11)//scaffold_12:7789355-7790294(+) (11)	NA	O04395	Flavonol synthase/flavanone 3-hydroxylase (Fragment)	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g55070.1	"gibberellin 20 oxidase 2, putative"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.59880.1.S1_at	A	A1TS	POPTR_0001s35430	POPTR_0001s35430 (11)	scaffold_1:33758714-33759461(+) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT3G28007.1	Nodulin MtN3 family protein 	LOC_Os01g42090.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g109190.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59887.1.S1_at	A	A1TS	POPTR_0013s04530	POPTR_0013s04530 (11)	scaffold_13:3111641-3111802(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT5G29000.2	Homeodomain-like superfamily protein 	LOC_Os03g21240.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5989.1.S1_s_at	A	A2TS	POPTR_0006s25280	POPTR_0006s25280 (11)//POPTR_0018s08250 (11)	scaffold_18:9132420-9132455(+) (11)//scaffold_6:23688169-23688204(-) (11)	NA	P51615	NADP-dependent malic enzyme	AT5G25880.1	NADP-malic enzyme 3 	LOC_Os01g52500.2	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.5989.2.S1_at	A	A1TS	POPTR_0006s25280	POPTR_0006s25280 (11)	scaffold_6:23687254-23687373(-) (11)	NA	P51615	NADP-dependent malic enzyme	AT5G25880.1	NADP-malic enzyme 3 	LOC_Os01g52500.2	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.5989.2.S1_s_at	A	A1TS	POPTR_0006s25280	POPTR_0006s25280 (11)	scaffold_6:23687364-23687572(-) (11)	NA	P51615	NADP-dependent malic enzyme	AT5G25880.1	NADP-malic enzyme 3 	LOC_Os01g52500.2	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.59892.1.S1_at	A	A1TS	POPTR_0007s01060	POPTR_0007s01060 (11)	scaffold_7:583484-584056(+) (11)	NA	A8MQA2	Non-specific lipid-transfer protein 13	AT5G44265.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59907.1.A1_at	A	A1TS	POPTR_0009s11110	POPTR_0009s11110 (11)	scaffold_9:9333859-9335060(-) (11)	NA	NA	NA	AT2G15860.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g52780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59908.1.A1_at	A	A1TS	POPTR_0011s05890	POPTR_0011s05890 (10)	scaffold_11:5929586-5929999(+) (10)	NA	NA	NA	AT1G28520.2	vascular plant one zinc finger protein 	LOC_Os01g54930.1	"one zinc finger protein, putative, expressed"	Medtr4g109030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5992.1.S1_at	A	A1TS	POPTR_0009s01940	POPTR_0009s01940 (11)	scaffold_9:2408191-2409165(-) (11)	NA	P43287	Aquaporin PIP2-2	AT2G37170.1	plasma membrane intrinsic protein 2 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.59925.1.S1_at	A	A1TS	POPTR_0002s05320	POPTR_0002s05320 (11)	scaffold_2:3457250-3457794(-) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.2	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g086320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59928.1.S1_at	A	A1TS	POPTR_0018s10590	POPTR_0018s10590 (11)	scaffold_18:11483257-11485085(-) (11)	NA	Q562D6	Nef-associated protein 1	AT4G28020.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0066 (InterPro:IPR001378); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g25950.1	"regulator protein, putative, expressed"	Medtr8g128010.1	Protein of unknown function UPF0066 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59939.1.S1_at	A	A1TS	POPTR_0013s02580	POPTR_0013s02580 (9)	scaffold_13:1526542-1527075(-) (9)	NA	Q8L4B2	Nuclear transcription factor Y subunit C-9	AT1G08970.2	"nuclear factor Y, subunit C9 "	LOC_Os02g07450.2	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr7g139450.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.59940.1.S1_s_at	A	A3TS	POPTR_0019s12390	POPTR_0019s12390 (11)//POPTR_0019s12380 (10)//POPTR_0019s12370 (10)	scaffold_19:13410774-13411500(-) (11)//scaffold_19:13421866-13422360(-) (10)//scaffold_19:13434768-13435494(-) (11)	NA	P27054	Endochitinase PR4	AT3G54420.1	homolog of carrot EP3-3 chitinase 	LOC_Os04g41680.1	"CHIT3 - Chitinase family protein precursor, expressed"	Medtr2g120640.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.59972.2.S1_a_at	A	A1TS	POPTR_0012s04280	POPTR_0012s04280 (11)	scaffold_12:3505930-3508810(-) (11)	NA	Q943Z6	Signal recognition particle 19 kDa protein	AT1G48160.1	"signal recognition particle 19 kDa protein, putative / SRP19, putative "	LOC_Os06g23430.2	"signal recognition particle 19 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
PtpAffx.5999.1.S1_s_at	A	A1TS	POPTR_0002s19960	POPTR_0002s19960 (11)	scaffold_2:15887604-15887645(-) (11)	NA	Q8KPU9	Arginyl-tRNA synthetase	AT4G26300.1	"Arginyl-tRNA synthetase, class Ic "	LOC_Os05g07030.1	"arginyl-tRNA synthetase, putative, expressed"	Medtr3g128230.1	DALR anticodon binding; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006420|arginyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004814|arginine-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.6000.1.A1_a_at	A	A1TA	POPTR_0001s03750	POPTR_0001s03750 (11)	scaffold_1:3017612-3017799(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6000.2.A1_a_at	A	A2TS	POPTR_0002s26390	POPTR_0002s26410 (9)//POPTR_0002s26390 (9)	scaffold_1:3020249-3020306(-) (9)//scaffold_2:23369789-23369846(+) (9)//scaffold_2:23378650-23378707(+) (9)	NA	NA	NA	AT2G30942.1	Protein of unknown function (DUF3317) 	LOC_Os07g26550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6000.2.A1_at	A	A1TS	POPTR_0002s26410	POPTR_0002s26410 (11)	scaffold_2:23378486-23380195(+) (11)	NA	NA	NA	AT2G30942.1	Protein of unknown function (DUF3317) 	LOC_Os07g26550.1	expressed protein	Medtr7g025670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6000.4.A1_a_at	A	A1TS	POPTR_0002s26390	POPTR_0002s26390 (11)	scaffold_2:23371922-23372112(+) (11)	NA	NA	NA	AT2G30942.1	Protein of unknown function (DUF3317) 	LOC_Os07g26550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6001.1.S1_at	A	A1TS	POPTR_0009s01470	POPTR_0009s01470 (11)	scaffold_9:1806186-1806459(-) (11)	NA	P08926	"RuBisCO large subunit-binding protein subunit alpha, chloroplastic"	AT2G28000.1	chaperonin-60alpha 	LOC_Os12g17910.1	"T-complex protein, putative, expressed"	AC233663_8.1	Chaperonin Cpn60 AC233663.2 79149-81923 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.6003.2.A1_s_at	A	A1TS	POPTR_0014s07710	POPTR_0014s07710 (11)	scaffold_14:5776057-5776398(-) (11)	NA	P93788	Remorin	AT3G61260.1	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60031.1.S1_at	A	A1TS	POPTR_0017s14110	POPTR_0017s14110 (9)	scaffold_17:14284725-14287353(-) (9)	NA	Q8K4H1	Probable arylformamidase	AT5G15860.1	prenylcysteine methylesterase 	LOC_Os05g50170.2	"ATPCME, putative, expressed"	AC233657_30.1	"Carboxylesterase, type B AC233657.1 159050-155204 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60034.1.S1_a_at	A	A1TS	POPTR_0012s08770	POPTR_0012s08770 (11)	scaffold_12:9853039-9853672(+) (11)	NA	Q5RC94	Next to BRCA1 gene 1 protein	AT4G24690.1	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein 	LOC_Os02g38050.3	"joka2, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.60034.2.S1_at	A	A1MS	POPTR_0012s08770	POPTR_0012s08770 (9)	scaffold_12:9852973-9853621(+) (9)	NA	Q5RC94	Next to BRCA1 gene 1 protein	AT4G24690.1	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein 	LOC_Os02g38050.3	"joka2, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.60049.2.S1_a_at	A	A1TS	POPTR_0001s14470	POPTR_0001s14470 (11)	scaffold_1:11348295-11348831(-) (11)	NA	Q9ZVQ6	F-box protein PP2-B10	AT2G02360.1	phloem protein 2-B10 	LOC_Os02g56760.1	OsFBX66 - F-box domain containing protein	Medtr1g092780.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60070.1.S1_at	A	A1TS	POPTR_0018s01770	POPTR_0018s01770 (11)	scaffold_18:1606466-1606951(-) (11)	NA	NA	NA	AT4G32295.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60076.2.A1_at	A	A1MS	POPTR_0005s22640	POPTR_0005s22640 (9)	scaffold_5:21558523-21558720(-) (9)	NA	Q9C8L4	"Hydroxyacylglutathione hydrolase 3, mitochondrial"	AT1G53580.1	glyoxalase II  3 	LOC_Os01g47690.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr5g077130.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60077.1.S1_at	A	A1TS	POPTR_0006s11980	POPTR_0006s11980 (10)	scaffold_6:9147651-9148275(-) (10)	NA	Q9ZSS6	"Threonine dehydratase biosynthetic, chloroplastic"	AT3G10050.1	L-O-methylthreonine resistant 1 	LOC_Os03g50510.1	"threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed"	Medtr1g073850.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0044283|small molecule biosynthetic process||GO:0009097|isoleucine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0004794|L-threonine ammonia-lyase activity	NA
PtpAffx.60081.1.A1_at	A	A1TS	POPTR_0005s11920	POPTR_0005s11920 (11)	scaffold_5:8706112-8706572(+) (11)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr5g021420.1	"SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.60083.1.S1_s_at	A	A2TS	POPTR_0011s16850	POPTR_0011s16850 (11)//POPTR_0221s00220 (11)	scaffold_11:18595670-18596026(+) (11)//scaffold_221:24509-24865(-) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os06g06380.1	"NBS-LRR type disease resistance protein, putative, expressed"	Medtr3g015730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.60096.1.S1_at	A	A1TS	POPTR_0012s13800	POPTR_0012s13800 (11)	scaffold_12:13794530-13795062(-) (11)	NA	Q9FNZ2	Zinc finger CCCH domain-containing protein 48	AT4G25440.1	zinc finger WD40 repeat protein 1 	LOC_Os02g45480.1	"nucleic acid binding protein, putative, expressed"	AC235567_67.1	"Zinc finger, CCCH-type AC235567.1 251711-249065 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.6010.1.A1_at	A	A1MS	POPTR_0018s09890	POPTR_0018s09890 (11)	scaffold_18:10940018-10940444(-) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os08g12430.1	"VERNALIZATION-INSENSITIVE, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60102.1.S1_s_at	A	A1TS	POPTR_0016s11820	POPTR_0016s11820 (11)	scaffold_16:10999470-10999647(+) (11)	NA	NA	NA	AT3G09090.1	defective in exine formation protein (DEX1) 	LOC_Os03g61050.1	"FG-GAP repeat-containing protein, putative, expressed"	Medtr4g012280.1	"DEX1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60109.1.S1_s_at	A	A1TS	POPTR_0016s14910	POPTR_0016s14910 (11)	scaffold_16:13992713-13993747(+) (11)	NA	NA	NA	AT3G23590.1	REF4-related 1 	LOC_Os07g48350.1	"structural constituent of ribosome, putative, expressed"	Medtr7g080810.1	"REF4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60110.1.S1_a_at	A	A1TS	POPTR_0019s15400	POPTR_0019s15400 (11)	scaffold_19:15904591-15905177(-) (11)	NA	Q6PGS5	Transmembrane protein 56-B	AT4G10360.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os01g60120.3	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.60130.1.S1_at	A	A1TS	POPTR_0001s37920	POPTR_0001s37920 (11)	scaffold_1:36990717-36991220(-) (11)	NA	P48809	Heterogeneous nuclear ribonucleoprotein 27C	AT3G13224.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g38410.3	"RNA recognition motif containing protein, putative, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.60143.2.S1_a_at	A	A1TS	POPTR_0004s05060	POPTR_0004s05060 (11)	scaffold_4:3804093-3805298(+) (11)	NA	NA	NA	AT1G28540.1	unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g33340.3	expressed protein	Medtr2g018440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60149.1.S1_at	A	A1TS	POPTR_0016s13760	POPTR_0016s13760 (11)	scaffold_16:12893346-12894586(-) (11)	NA	P93798	Alpha-soluble NSF attachment protein	AT3G56190.1	alpha-soluble NSF attachment protein 2 	LOC_Os08g18110.1	"alpha-soluble NSF attachment protein, putative, expressed"	Medtr5g091170.1	Tetratricopeptide-like helical 	GO:0006886|intracellular protein transport	NA	GO:0005783|endoplasmic reticulum||GO:0005794|Golgi apparatus
PtpAffx.6016.1.S1_at	A	A1TS	POPTR_0014s18940	POPTR_0014s18940 (11)	scaffold_14:16540321-16540503(+) (11)	NA	P49211	60S ribosomal protein L32-1	AT4G18100.1	Ribosomal protein L32e 	LOC_Os09g32532.2	"60S ribosomal protein L32, putative, expressed"	Medtr4g134080.1	Ribosomal protein L32e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.6016.2.S1_at	A	A1TS	POPTR_0001s06580	POPTR_0001s06580 (11)	scaffold_1:5067202-5067488(+) (11)	NA	NA	NA	AT3G54390.1	sequence-specific DNA binding transcription factors 	LOC_Os09g38570.1	"transcription factor like protein, putative, expressed"	Medtr3g005850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60174.1.S1_s_at	A	A1TS	POPTR_0001s39170	POPTR_0001s39170 (11)	scaffold_1:38368529-38368784(-) (11)	NA	NA	NA	AT3G14750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). 	LOC_Os07g32450.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g071550.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60212.1.S1_at	A	A1TS	POPTR_0008s22910	POPTR_0008s22910 (11)	scaffold_8:17977058-17978183(+) (11)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT3G17430.1	Nucleotide-sugar transporter family protein 	LOC_Os03g49570.1	"domain of unknown function, DUF250 domain containing protein, expressed"	Medtr8g134090.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60219.1.S1_at	A	A1TS	POPTR_0006s11640	POPTR_0006s11640 (11)	scaffold_6:8856712-8857117(+) (11)	NA	NA	NA	AT5G03670.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36420.1); Has 700 Blast hits to 624 proteins in 104 species: Archae - 0; Bacteria - 18; Metazoa - 333; Fungi - 60; Plants - 73; Viruses - 24; Other Eukaryotes - 192 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6024.2.S1_a_at	A	A1TS	POPTR_0001s40460	POPTR_0001s40460 (11)	scaffold_1:39900605-39900691(-) (11)	NA	Q8GXH3	"Protein OSB2, chloroplastic"	AT4G20010.2	plastid transcriptionally active 9 	LOC_Os01g72049.1	"retrotransposon, putative, centromere-specific, expressed"	Medtr1g083420.1	Single-strand binding protein 	NA	GO:0003697|single-stranded DNA binding	NA
PtpAffx.6024.2.S1_at	A	A1TS	POPTR_0001s40460	POPTR_0001s40460 (11)	scaffold_1:39900828-39902212(-) (11)	NA	Q8GXH3	"Protein OSB2, chloroplastic"	AT4G20010.2	plastid transcriptionally active 9 	LOC_Os01g72049.1	"retrotransposon, putative, centromere-specific, expressed"	Medtr1g083420.1	Single-strand binding protein 	NA	GO:0003697|single-stranded DNA binding	NA
PtpAffx.60282.1.S1_s_at	A	A1TS	POPTR_0014s02310	POPTR_0014s02310 (11)	scaffold_14:1965262-1965665(-) (11)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.60295.1.A1_at	A	A1TS	POPTR_0010s21400	POPTR_0010s21400 (9)	scaffold_10:18698042-18698579(+) (11)	NA	B9HTK2	UPF0497 membrane protein 2	AT3G55390.1	Uncharacterised protein family (UPF0497) 	LOC_Os12g38100.1	"membrane associated DUF588 domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60297.1.S1_at	A	A1TS	POPTR_0008s10970	POPTR_0008s10970 (10)	scaffold_8:6910883-6911138(+) (10)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT3G25560.1	NSP-interacting kinase 2 	LOC_Os06g16330.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.60298.1.S1_s_at	A	A2TS	POPTR_0006s07580	POPTR_0006s07580 (11)//POPTR_0018s14020 (11)	scaffold_18:14276577-14277512(+) (11)//scaffold_6:5506576-5507413(+) (11)	NA	O65351	Subtilisin-like protease	AT4G30020.1	PA-domain containing subtilase family protein 	LOC_Os06g48650.2	"OsSub52 - Putative Subtilisin homologue, expressed"	Medtr2g042580.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	GO:0005618|cell wall||GO:0016020|membrane
PtpAffx.60307.1.S1_s_at	A	A3TS	POPTR_0006s27270	POPTR_0006s27270 (11)//POPTR_0006s27280 (11)//POPTR_0896s00200 (11)	scaffold_6:25232567-25232881(-) (11)//scaffold_6:25240137-25240451(-) (11)//scaffold_896:1374-1688(-) (11)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.6033.1.S1_at	A	A1TS	POPTR_0004s21950	POPTR_0004s21950 (11)	scaffold_4:20902719-20904036(+) (11)	NA	O22446	Histone deacetylase 19	AT4G38130.1	histone deacetylase 1 	LOC_Os06g38470.1	"histone deacetylase 19, putative, expressed"	Medtr3g164120.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6033.3.S1_a_at	A	A2TS	POPTR_0004s21950	POPTR_0009s17200 (11)//POPTR_0004s21950 (11)	scaffold_4:20901242-20901608(+) (11)//scaffold_9:12936956-12937322(+) (11)	NA	O22446	Histone deacetylase 19	AT4G38130.1	histone deacetylase 1 	LOC_Os06g38470.1	"histone deacetylase 19, putative, expressed"	Medtr3g164120.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6033.4.A1_at	A	A1TS	POPTR_0017s11880	POPTR_0017s11880 (11)	scaffold_17:11820089-11820341(+) (11)	NA	P81392	Myb-related protein 306	AT3G47600.1	myb domain protein 94 	LOC_Os08g33940.1	"MYB family transcription factor, putative, expressed"	Medtr6g012780.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60420.1.S1_at	A	A1TS	POPTR_0001s16170	POPTR_0001s16170 (11)	scaffold_1:12995547-12996290(+) (11)	NA	Q9C8M9	Protein STRUBBELIG-RECEPTOR FAMILY 6	AT1G53730.1	STRUBBELIG-receptor family 6 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.60429.1.S1_a_at	A	A1TS	POPTR_0016s12410	POPTR_0016s12410 (11)	scaffold_16:11764057-11764466(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60429.2.S1_a_at	A	A1TS	POPTR_0016s12410	POPTR_0016s12410 (11)	scaffold_16:11764059-11764486(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60473.1.S1_at	A	A1TS	POPTR_0006s23680	POPTR_0006s23680 (11)	scaffold_6:22390950-22391362(-) (11)	NA	Q42371	LRR receptor-like serine/threonine-protein kinase ERECTA	AT2G26330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os06g03970.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr1g019670.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.6051.1.S1_at	A	A1TS	POPTR_0005s12480	POPTR_0005s12480 (11)	scaffold_5:9247888-9249528(+) (11)	NA	Q9C9G6	UPF0195 protein At1g68310	AT3G50845.1	Protein of unknown function (DUF59) 	LOC_Os03g56410.2	expressed protein	Medtr5g020030.1	"UPF0195 protein At3g09380, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6053.1.S1_at	A	A1TS	POPTR_0015s03440	POPTR_0015s03440 (10)	scaffold_15:3000604-3000787(+) (10)	NA	Q9FF10	Heparanase-like protein 1	AT5G07830.1	glucuronidase 2 	LOC_Os12g38920.2	"heparanase-like protein precursor, putative, expressed"	Medtr5g046570.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.6053.1.S1_s_at	A	A1TS	POPTR_0015s03440	POPTR_0015s03440 (11)	scaffold_15:2999205-3000677(+) (11)	NA	Q9FF10	Heparanase-like protein 1	AT5G07830.1	glucuronidase 2 	LOC_Os12g38920.2	"heparanase-like protein precursor, putative, expressed"	Medtr5g046570.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.60542.1.S1_at	A	A1TS	POPTR_0014s12990	POPTR_0014s12990 (11)	scaffold_14:9570066-9570524(+) (11)	NA	NA	NA	AT4G03150.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g34880.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60566.2.S1_a_at	A	A1TS	POPTR_0006s24320	POPTR_0006s24320 (11)	scaffold_6:22955316-22955604(-) (11)	NA	P47787	Thromboxane-A synthase	AT2G26170.1	"cytochrome P450, family 711, subfamily A, polypeptide 1 "	LOC_Os01g50590.1	"cytochrome P450, putative"	Medtr3g139760.1	"E-class P450, group I "	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.60566.2.S1_at	A	A1MS	POPTR_0006s24320	POPTR_0006s24320 (11)	scaffold_6:22955242-22955757(-) (11)	NA	P47787	Thromboxane-A synthase	AT2G26170.1	"cytochrome P450, family 711, subfamily A, polypeptide 1 "	LOC_Os01g50590.1	"cytochrome P450, putative"	Medtr3g139760.1	"E-class P450, group I "	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.6058.1.S1_s_at	A	A1TS	POPTR_0018s10460	POPTR_0018s10460 (11)	scaffold_18:11383489-11384976(+) (11)	NA	Q9FKK7	Xylose isomerase	AT5G57655.2	xylose isomerase family protein 	LOC_Os07g47290.1	"xylose isomerase, putative, expressed"	Medtr8g128270.1	Xylose isomerase-like TIM barrel; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6058.2.S1_at	A	A1TS	POPTR_0002s19060	POPTR_0002s19060 (10)	scaffold_2:14965386-14966931(-) (10)	NA	Q8S528	"Aldehyde dehydrogenase family 2 member B7, mitochondrial"	AT1G23800.1	aldehyde dehydrogenase 2B7 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.60584.1.S1_at	A	A1TS	POPTR_0002s02380	POPTR_0002s02380 (10)	scaffold_2:1345300-1346218(-) (10)	NA	NA	NA	AT1G19980.1	cytomatrix protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60588.1.S1_at	A	A1TS	POPTR_0005s11480	POPTR_0005s11480 (11)	scaffold_5:8283212-8283790(-) (11)	NA	P83332	Thaumatin-like protein 1	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.606.3.S1_at	A	A1TS	POPTR_0008s19040	POPTR_0008s19040 (11)	scaffold_8:13030083-13030412(-) (11)	NA	NA	NA	AT3G26510.4	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os11g25780.1	"PB1 domain containing protein, expressed"	Medtr5g034310.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.606.4.S1_a_at	A	A1TS	POPTR_0008s19040	POPTR_0008s19040 (11)	scaffold_8:13030774-13030866(-) (11)	NA	NA	NA	AT3G26510.4	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os11g25780.1	"PB1 domain containing protein, expressed"	Medtr5g034310.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.606.5.S1_a_at	A	A1TS	POPTR_0003s11350	POPTR_0003s11350 (11)	scaffold_3:12181002-12182068(+) (11)	NA	Q93YR3	FAM10 family protein At4g22670	AT4G22670.1	HSP70-interacting protein 1 	LOC_Os02g01030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.606.6.S1_a_at	A	A2TS	POPTR_0001s07820	POPTR_0001s07820 (11)//POPTR_0003s11350 (11)	scaffold_1:5912456-5912898(+) (11)//scaffold_3:12181411-12181875(+) (11)	NA	Q93YR3	FAM10 family protein At4g22670	AT4G22670.1	HSP70-interacting protein 1 	LOC_Os02g01030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.606.6.S1_at	A	A1TS	POPTR_0001s07820	POPTR_0001s07820 (11)	scaffold_1:5912246-5912722(+) (11)	NA	Q93YR3	FAM10 family protein At4g22670	AT4G22670.1	HSP70-interacting protein 1 	LOC_Os02g01030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.606.9.S1_at	A	A1TS	POPTR_0001s07820	POPTR_0001s07820 (11)	scaffold_1:5915517-5916036(+) (11)	NA	Q93YR3	FAM10 family protein At4g22670	AT4G22670.1	HSP70-interacting protein 1 	LOC_Os02g01030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6060.1.S1_s_at	A	A1TS	POPTR_0009s05830	POPTR_0009s05830 (11)	scaffold_9:5814429-5815008(-) (11)	NA	Q58119	Uncharacterized transporter MJ0709	AT1G51340.2	MATE efflux family protein 	LOC_Os03g11734.2	"MATE efflux protein, putative, expressed"	Medtr2g117440.1	Ribosomal protein S2; Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.60606.1.S1_at	A	A1TS	POPTR_0011s15050	POPTR_0011s15050 (9)	scaffold_11:17238238-17238732(+) (9)	NA	Q39117	Trihelix transcription factor GT-2	AT1G33240.1	GT-2-like 1 	LOC_Os03g02240.1	"AT-GTL1, putative, expressed"	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60606.2.A1_s_at	A	A1TS	POPTR_0001s45870	POPTR_0001s45870 (11)	scaffold_1:46372382-46372417(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6061.1.S1_at	A	A1TS	POPTR_0005s27270	POPTR_0005s27270 (11)	scaffold_5:24986910-24987840(-) (11)	NA	Q5R7B8	Kelch-like protein 20	AT2G30600.4	BTB/POZ domain-containing protein 	LOC_Os05g27880.2	"BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed"	Medtr5g075660.1	BTB/POZ; Galactose-binding like; ; 	GO:0007155|cell adhesion	GO:0005515|protein binding	NA
PtpAffx.6062.1.A1_a_at	A	A1TS	POPTR_0014s04450	POPTR_0014s04450 (11)	scaffold_14:3450243-3451374(+) (11)	NA	Q0VCU0	Poly(rC)-binding protein 4	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os10g35220.2	"KH domain containing protein, putative, expressed"	Medtr7g090260.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.6062.2.S1_a_at	A	A1TS	POPTR_0014s04450	POPTR_0014s04450 (11)	scaffold_14:3449413-3449896(+) (11)	NA	Q0VCU0	Poly(rC)-binding protein 4	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os10g35220.2	"KH domain containing protein, putative, expressed"	Medtr7g090260.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.60647.1.S1_at	A	A1TS	POPTR_0002s11520	POPTR_0002s11520 (9)	scaffold_2:8577889-8578491(+) (9)	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.6065.2.S1_at	A	A1TS	POPTR_0008s11540	POPTR_0008s11540 (11)	scaffold_8:7331410-7332064(-) (11)	NA	Q84V83	Leucoanthocyanidin reductase	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g15360.1	nmrA-like family domain containing protein	Medtr1g118020.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.6065.3.A1_a_at	A	A1TS	POPTR_0010s13990	POPTR_0010s13990 (11)	scaffold_10:13698264-13700477(+) (11)	NA	Q84V83	Leucoanthocyanidin reductase	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g15360.1	nmrA-like family domain containing protein	Medtr1g118020.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.60655.1.S1_s_at	A	A1TS	POPTR_0004s24410	POPTR_0004s24410 (11)	scaffold_4:23085323-23085470(-) (11)	NA	A7SBF0	Integrator complex subunit 9 homolog	AT3G07530.1	CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). 	LOC_Os03g13960.2	expressed protein	Medtr3g020530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60657.1.S1_at	A	A1MS	POPTR_0009s05960	POPTR_0009s05960 (9)	scaffold_9:5913888-5914343(+) (9)	NA	NA	NA	AT5G13800.1	pheophytinase 	LOC_Os06g24730.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g041220.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60663.1.S1_at	A	A1MS	POPTR_0011s03960	POPTR_0011s03960 (9)	scaffold_11:4011472-4011737(+) (9)	NA	NA	NA	AT4G27310.1	B-box type zinc finger family protein 	LOC_Os08g08120.3	"B-box zinc finger family protein, putative, expressed"	Medtr2g103200.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.60700.1.S1_at	A	A1MS	POPTR_0011s03450	POPTR_0011s03450 (10)	scaffold_11:3557706-3558021(+) (10)	NA	NA	NA	AT1G11480.1	eukaryotic translation initiation factor-related 	LOC_Os07g36200.1	"eukaryotic translation initiation factor-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60774.1.S1_at	A	A1TA	POPTR_0015s06830	POPTR_0015s06830 (11)	scaffold_15:7859665-7860200(+) (11)	NA	NA	NA	AT5G61040.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g38730.1	expressed protein	Medtr3g036680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.608.1.S1_at	A	A1TS	POPTR_0016s11990	POPTR_0016s11990 (11)	scaffold_16:11209270-11209487(+) (11)	NA	Q9FF86	BAHD acyltransferase DCR	AT5G01210.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g63480.1	"transferase family protein, putative, expressed"	Medtr4g012590.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.608.2.A1_at	A	A1TS	POPTR_0006s09870	POPTR_0006s09870 (11)	scaffold_6:7284602-7285034(+) (11)	NA	Q9FF86	BAHD acyltransferase DCR	AT5G01210.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g63480.1	"transferase family protein, putative, expressed"	Medtr4g012590.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.608.3.S1_a_at	A	A2TS	POPTR_0006s09870	POPTR_0016s11990 (11)//POPTR_0006s09870 (11)	scaffold_16:11208304-11208463(+) (11)//scaffold_6:7283745-7283904(+) (11)	NA	Q9FF86	BAHD acyltransferase DCR	AT5G01210.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g63480.1	"transferase family protein, putative, expressed"	Medtr4g012590.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.608.3.S1_at	A	A1TS	POPTR_0006s09870	POPTR_0006s09870 (11)	scaffold_6:7283895-7284155(+) (11)	NA	Q9FF86	BAHD acyltransferase DCR	AT5G01210.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g63480.1	"transferase family protein, putative, expressed"	Medtr4g012590.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.608.4.S1_a_at	A	A1TS	POPTR_0016s11990	POPTR_0016s11990 (11)	scaffold_16:11208152-11208607(+) (11)	NA	Q9FF86	BAHD acyltransferase DCR	AT5G01210.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g63480.1	"transferase family protein, putative, expressed"	Medtr4g012590.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.6080.1.S1_s_at	A	A1TS	POPTR_0011s04420	POPTR_0011s04420 (11)	scaffold_11:4411937-4412973(+) (11)	NA	P24021	Nuclease S1	AT4G21585.1	endonuclease 4 	LOC_Os01g03730.1	"nuclease PA3, putative, expressed"	Medtr4g125400.1	S1/P1 nuclease 	GO:0044265|cellular macromolecule catabolic process||GO:0006308|DNA catabolic process	GO:0003676|nucleic acid binding||GO:0004519|endonuclease activity	NA
PtpAffx.60804.1.S1_at	A	A1MS	POPTR_0004s23700	POPTR_0004s23700 (11)	scaffold_4:22332011-22333638(-) (11)	NA	NA	NA	AT2G23390.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink). "	LOC_Os04g36062.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60823.1.S1_at	A	A1TS	POPTR_0001s30740	POPTR_0001s30740 (11)	scaffold_1:29214870-29216444(-) (11)	POPTR_0009s09880 (7)	Q54DD7	Protein unc-50 homolog	AT2G15240.1	UNC-50 family protein 	LOC_Os09g02170.1	"unc-50, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6085.1.S1_s_at	A	A1TS	POPTR_0001s12540	POPTR_0001s12540 (11)	scaffold_1:9724363-9725489(+) (11)	NA	NA	NA	AT5G47860.1	Protein of unknown function (DUF1350) 	LOC_Os04g33280.2	expressed protein	Medtr8g083960.1	Protein of unknown function DUF1350 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60889.1.S1_at	A	A1TS	POPTR_0004s07820	POPTR_0004s07820 (11)	scaffold_4:6412051-6413623(+) (11)	NA	Q9M9P0	Expansin-A13	AT3G03220.1	expansin A13 	LOC_Os04g49410.1	"expansin precursor, putative, expressed"	Medtr5g084850.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.609.1.A1_s_at	A	A1TS	POPTR_0003s03980	POPTR_0003s03980 (11)	scaffold_3:4598514-4602149(+) (11)	NA	O82204	60S ribosomal protein L28-1	AT2G19730.3	Ribosomal L28e protein family 	LOC_Os02g57540.1	"60S ribosomal protein L28-1, putative, expressed"	Medtr2g121690.1	Ribosomal L28e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.609.2.S1_s_at	A	A1TS	POPTR_0001s19490	POPTR_0001s19490 (10)	scaffold_1:17169172-17170330(+) (10)	NA	O82204	60S ribosomal protein L28-1	AT2G19730.3	Ribosomal L28e protein family 	LOC_Os01g51020.1	"60S ribosomal protein L28-1, putative, expressed"	Medtr2g121690.1	Ribosomal L28e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.609.3.A1_at	A	A1TS	POPTR_0010s13120	POPTR_0010s13120 (10)	scaffold_10:12999889-13000216(-) (10)	NA	Q54FU9	Mitochondrial substrate carrier family protein W	AT1G25380.1	NAD+ transporter 2 	LOC_Os05g28870.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g068050.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60905.1.S1_at	A	A1TS	POPTR_0001s23760	POPTR_0001s23760 (11)	scaffold_1:23133969-23134780(-) (11)	NA	O80433	"Citrate synthase, mitochondrial"	AT2G44350.2	Citrate synthase family protein 	LOC_Os02g10070.2	"citrate synthase, putative, expressed"	Medtr5g099240.1	Citrate synthase 	GO:0044262|cellular carbohydrate metabolic process	"GO:0046912|""transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer"""	NA
PtpAffx.60920.1.S1_at	A	A1MS	POPTR_0008s09960	POPTR_0008s09960 (11)	scaffold_8:6170647-6170969(+) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT1G48110.2	evolutionarily conserved C-terminal region 7 	LOC_Os03g20180.2	"ECT protein, putative, expressed"	Medtr8g134440.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60925.1.S1_at	A	A1TS	POPTR_0004s23240	POPTR_0004s23240 (11)	scaffold_4:22026488-22027129(+) (11)	NA	Q07442	Bromodomain-containing factor 2	AT1G58025.3	DNA-binding bromodomain-containing protein 	LOC_Os08g01794.2	"bromodomain domain containing protein, expressed"	Medtr2g005590.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60950.1.A1_s_at	A	A1TS	POPTR_0008s10980	POPTR_0008s10980 (11)	scaffold_8:6912138-6912749(-) (11)	NA	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570	AT1G13570.1	F-box/RNI-like superfamily protein 	NA	NA	AC233842_5.1	Cyclin-like F-box; FBD AC233842.2 14326-16643 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60950.3.S1_a_at	A	A1TS	POPTR_0010s14420	POPTR_0010s14420 (11)	scaffold_10:14038378-14038558(-) (11)	NA	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570	AT1G13570.1	F-box/RNI-like superfamily protein 	LOC_Os02g33400.1	"OsFBL9 - F-box domain and LRR containing protein, expressed"	AC233842_5.1	Cyclin-like F-box; FBD AC233842.2 14326-16643 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60950.3.S1_at	A	A1TS	POPTR_0010s14420	POPTR_0010s14420 (9)	scaffold_10:14038635-14038998(-) (9)	NA	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570	AT1G13570.1	F-box/RNI-like superfamily protein 	LOC_Os02g33400.1	"OsFBL9 - F-box domain and LRR containing protein, expressed"	AC233842_5.1	Cyclin-like F-box; FBD AC233842.2 14326-16643 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60955.1.S1_s_at	A	A1TS	POPTR_0001s20720	POPTR_0001s20720 (11)	scaffold_1:18829640-18830834(-) (11)	NA	Q94IA6	3-epi-6-deoxocathasterone 23-monooxygenase	AT3G13730.1	"cytochrome P450, family 90, subfamily D, polypeptide 1 "	LOC_Os01g10040.1	"cytochrome P450, putative, expressed"	Medtr5g089930.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.60967.1.S1_at	A	A1TS	POPTR_0015s09350	POPTR_0015s09350 (11)	scaffold_15:10572189-10573604(-) (11)	NA	C0LGV0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	AT1G51940.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os01g36550.1	"protein kinase family protein, putative"	Medtr5g034850.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.60968.1.S1_at	A	A1MS	POPTR_0005s27580	POPTR_0005s27580 (10)	scaffold_5:25173881-25174223(+) (10)	NA	Q6DR03	Probable S-acyltransferase At2g33640	AT2G33640.1	DHHC-type zinc finger family protein 	LOC_Os04g49560.1	"zinc finger family protein, putative, expressed"	Medtr3g160020.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.60977.1.S1_s_at	A	A2TS	POPTR_0015s12010	POPTR_0015s12020 (11)//POPTR_0015s12010 (11)	scaffold_15:12454193-12454583(+) (11)//scaffold_15:12460663-12461053(+) (11)	NA	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129900.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60984.1.S1_at	A	A2TS	POPTR_0015s08410	POPTR_0015s08410 (11)//POPTR_0015s08400 (9)	scaffold_15:9670569-9671077(+) (9)//scaffold_15:9691601-9692109(+) (11)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50840.2	"BAH domain containing protein, putative, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.6099.1.S1_at	A	A1TS	POPTR_0005s11910	POPTR_0005s11910 (11)	scaffold_5:8685581-8687066(-) (11)	NA	Q9SD33	UPF0183 protein At3g51130	AT3G51130.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0183 (InterPro:IPR005373); Has 269 Blast hits to 265 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). 	LOC_Os06g49990.3	"UPF0183 protein, putative, expressed"	Medtr5g021430.1	Protein of unknown function UPF0183 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6101.1.S1_a_at	A	A1TS	POPTR_0005s05950	POPTR_0005s05950 (11)	scaffold_5:3910242-3910697(+) (11)	NA	NA	NA	AT2G38820.2	Protein of unknown function (DUF506)  	LOC_Os01g65740.1	plant-specific domain TIGR01615 family protein	Medtr4g142510.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61027.1.S1_at	A	A1TS	POPTR_0010s24880	POPTR_0010s24880 (10)	scaffold_10:20846926-20847429(-) (10)	NA	P34798	Uricase-2 isozyme 1	AT2G26230.1	"uricase / urate oxidase / nodulin 35, putative "	LOC_Os01g64520.1	"uricase, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0006144|purine base metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.61027.2.S1_at	A	A1TS	POPTR_0006s00290	POPTR_0006s00290 (11)	scaffold_6:61619-61759(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61027.3.S1_s_at	A	A1TS	POPTR_0016s00310	POPTR_0016s00310 (11)	scaffold_16:50249-50439(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61027.5.S1_s_at	A	A1TS	POPTR_0006s00290	POPTR_0006s00290 (11)	scaffold_6:61812-62210(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61027.6.A1_a_at	A	A1TS	POPTR_0010s24880	POPTR_0010s24880 (11)	scaffold_10:20847896-20849350(-) (11)	NA	P34798	Uricase-2 isozyme 1	AT2G26230.1	"uricase / urate oxidase / nodulin 35, putative "	LOC_Os01g64520.1	"uricase, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0006144|purine base metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.61049.1.S1_at	A	A1TS	POPTR_0003s19800	POPTR_0003s19800 (10)	scaffold_3:18430752-18430998(-) (10)	NA	Q9LK64	ABC transporter C family member 3	AT3G13080.1	multidrug resistance-associated protein 3 	LOC_Os01g07870.1	"ABC transporter family protein, putative, expressed"	Medtr5g034390.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.61059.1.S1_at	A	A1TS	POPTR_0006s24880	POPTR_0006s24880 (10)	scaffold_6:23400096-23400787(+) (10)	NA	Q6Z8B9	Probable protein phosphatase 2C 12	AT5G26010.1	Protein phosphatase 2C family protein 	LOC_Os02g13100.1	"protein phosphatase 2C, putative, expressed"	Medtr1g020720.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61105.1.S1_at	A	A1TS	POPTR_0017s14220	POPTR_0017s14220 (11)	scaffold_17:14359921-14360470(-) (11)	NA	O67409	Tryptophan synthase beta chain 2	AT5G38530.1	tryptophan synthase beta type 2 	LOC_Os06g42560.1	"tryptophan synthase beta chain 2, putative, expressed"	Medtr3g064270.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.61106.1.S1_at	A	A1TS	POPTR_0014s04020	POPTR_0014s04020 (11)	scaffold_14:3195647-3195731(+) (11)	NA	P28493	Pathogenesis-related protein 5	AT1G75030.1	thaumatin-like protein 3 	LOC_Os03g13070.1	thaumatin family domain containing protein	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61107.1.S1_at	A	A1TS	POPTR_0010s10330	POPTR_0010s10330 (11)	scaffold_10:10886335-10886834(-) (11)	NA	NA	NA	AT1G14345.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os03g07440.1	"putativ eribonuclease P, putative, expressed"	Medtr5g040000.1	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6111.1.S1_at	A	A1TS	POPTR_0004s12240	POPTR_0004s12240 (11)	scaffold_4:11310574-11311212(+) (11)	NA	P53536	"Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic"	AT3G29320.1	"Glycosyl transferase, family 35 "	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr6g014750.1	"Glycosyl transferase, family 35 "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
PtpAffx.6111.2.S1_a_at	A	A1TS	POPTR_0004s12240	POPTR_0004s12240 (11)	scaffold_4:11310094-11310271(+) (11)	NA	P53536	"Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic"	AT3G29320.1	"Glycosyl transferase, family 35 "	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr6g014750.1	"Glycosyl transferase, family 35 "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
PtpAffx.61115.1.S1_at	A	A1TS	POPTR_0001s31980	POPTR_0001s31980 (11)	scaffold_1:30416623-30417676(+) (11)	NA	Q9C7Z9	Serine carboxypeptidase-like 18	AT1G33540.1	serine carboxypeptidase-like 18 	LOC_Os04g09720.2	"OsSCP22 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g009240.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.6112.1.S1_at	A	A1TS	POPTR_0004s05940	POPTR_0004s05940 (11)	scaffold_4:4675188-4675329(+) (11)	NA	Q9FK68	Ras-related protein RABA1c	AT4G18800.1	RAB GTPase homolog A1D 	LOC_Os06g35814.1	"ras-related protein, putative, expressed"	Medtr2g091780.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.6114.1.S1_at	A	A1TS	POPTR_0005s05280	POPTR_0005s05280 (11)	scaffold_5:3494990-3495775(-) (11)	NA	Q8GTE3	40S ribosomal protein S3a	AT4G34670.1	Ribosomal protein S3Ae 	LOC_Os12g21798.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.61161.1.A1_at	A	A1MA	POPTR_0003s12020	POPTR_0003s12020 (11)	scaffold_3:12701676-12702032(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61163.1.S1_at	A	A1MS	POPTR_0008s10750	POPTR_0008s10750 (11)	scaffold_8:6763267-6763551(+) (11)	NA	Q9FGY1	Beta-D-xylosidase 1	AT5G49360.1	beta-xylosidase 1 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.61165.1.A1_a_at	A	A2TS	POPTR_0001s11320	POPTR_0003s14630 (11)//POPTR_0001s11320 (11)	scaffold_1:8760896-8761110(-) (11)//scaffold_3:14650095-14650309(-) (11)	NA	P09379	GTPase-activating protein GYP7	AT5G41940.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.61165.2.A1_at	A	A1TS	POPTR_0003s14630	POPTR_0003s14630 (11)	scaffold_3:14649903-14650187(-) (11)	NA	P09379	GTPase-activating protein GYP7	AT5G41940.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.61168.1.S1_at	A	A1TS	POPTR_0002s20370	POPTR_0002s20370 (11)	scaffold_2:16395020-16395495(-) (11)	NA	O81301	Probable pectinesterase/pectinesterase inhibitor 40	AT4G02320.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.6117.1.A1_a_at	A	A1TS	POPTR_0019s10570	POPTR_0019s10570 (11)	scaffold_19:12111752-12111816(+) (11)	NA	NA	NA	AT1G09645.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g34680.2	expressed protein	Medtr4g033000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6117.1.A1_at	A	A1TS	POPTR_0019s10570	POPTR_0019s10570 (10)	scaffold_19:12111804-12112641(+) (10)	NA	NA	NA	AT1G09645.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g34680.2	expressed protein	Medtr4g033000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61177.1.A1_at	A	A1TS	POPTR_0014s05690	POPTR_0014s05690 (11)	scaffold_14:4236134-4236495(-) (11)	NA	Q7XT42	Squamosa promoter-binding-like protein 7	AT1G27370.4	squamosa promoter binding protein-like 10 	LOC_Os04g46580.1	"OsSPL7 - SBP-box gene family member, expressed"	Medtr7g041150.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.61190.1.S1_at	A	A1TS	POPTR_0017s12720	POPTR_0017s12720 (11)	scaffold_17:12898656-12899139(-) (11)	NA	O23169	Pentatricopeptide repeat-containing protein At4g37170	AT4G37170.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g13230.1	"pentatricopeptide, putative, expressed"	Medtr5g008630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61196.1.S1_at	A	A1TS	POPTR_0010s07620	POPTR_0010s07620 (11)	scaffold_10:8633564-8633715(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61197.1.A1_at	A	A1TS	POPTR_0017s04750	POPTR_0017s04750 (10)	scaffold_17:3651372-3651824(+) (10)	NA	Q5R8J8	DnaJ homolog subfamily B member 4	AT2G20560.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	Medtr4g108870.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.6121.1.S1_at	A	A1TS	POPTR_0002s05370	POPTR_0002s05370 (11)	scaffold_2:3503451-3503692(-) (11)	NA	Q75HV0	Cyclin-P3-1	AT3G63120.1	cyclin p1;1 	LOC_Os05g33040.3	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61213.1.A1_s_at	A	A1TS	POPTR_0017s12600	POPTR_0017s12600 (11)	scaffold_17:12810226-12811647(+) (11)	NA	NA	NA	AT5G39380.1	Plant calmodulin-binding protein-related 	LOC_Os03g11290.1	expressed protein	Medtr6g013960.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61213.2.A1_s_at	A	A1TS	POPTR_0017s12600	POPTR_0017s12600 (11)	scaffold_17:12811248-12811461(+) (11)	NA	NA	NA	AT5G39380.1	Plant calmodulin-binding protein-related 	LOC_Os03g11290.1	expressed protein	Medtr6g013960.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61225.2.S1_s_at	A	A1TS	POPTR_0009s14190	POPTR_0009s14190 (11)	scaffold_9:11174843-11174994(-) (11)	NA	Q9BWH6	RNA polymerase II-associated protein 1	AT4G38440.1	"LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os06g37640.1	expressed protein	Medtr5g048760.1	"Tyrosine protein kinase, active site; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61228.1.S1_at	A	A1TS	POPTR_0011s04320	POPTR_0011s04320 (11)	scaffold_11:4326440-4327361(-) (11)	NA	NA	NA	AT1G11240.1	CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). 	LOC_Os03g23020.1	expressed protein	Medtr4g125350.1	"rRNA processing protein Rrp17 (, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61229.1.S1_at	A	A1MS	POPTR_0009s05140	POPTR_0009s05140 (11)	scaffold_9:5294345-5294483(+) (11)	NA	Q06716	ATP-dependent Clp protease ATP-binding subunit ClpL	AT1G07200.2	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61233.1.S1_at	A	A1MS	POPTR_0013s08200	POPTR_0013s08200 (10)	scaffold_13:7219879-7220333(+) (10)	NA	NA	NA	AT2G43945.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59870.1); Has 292 Blast hits to 292 proteins in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). 	LOC_Os01g23680.1	"rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61235.1.A1_at	A	A1TS	POPTR_0002s05690	POPTR_0002s05690 (10)	scaffold_2:3742394-3742763(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61239.1.S1_at	A	A1TS	POPTR_0016s12940	POPTR_0016s12940 (11)	scaffold_16:12263034-12263392(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G38300.1	myb-like HTH transcriptional regulator family protein 	LOC_Os12g01490.1	"MYB family transcription factor, putative, expressed"	Medtr7g075810.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61241.1.A1_at	A	A1MS	POPTR_0002s06930	POPTR_0002s06930 (9)	scaffold_2:4683757-4684267(-) (9)	NA	NA	NA	AT1G21200.1	sequence-specific DNA binding transcription factors 	LOC_Os11g06410.3	"homeodomain, putative, expressed"	Medtr1g125320.1	"Homeodomain-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61243.1.A1_at	A	A1TS	POPTR_0017s12700	POPTR_0017s12700 (9)	scaffold_17:12890912-12891322(+) (10)	NA	NA	NA	AT3G49645.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g16140.1	"FAD binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6127.2.A1_a_at	A	A1TS	POPTR_0010s07590	POPTR_0010s07590 (11)	scaffold_10:8619185-8621410(+) (11)	NA	NA	NA	AT1G04530.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04710.1	expressed protein	Medtr1g087320.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61296.2.S1_a_at	A	A1TS	POPTR_0005s24530	POPTR_0005s24530 (10)	scaffold_5:23058541-23058961(+) (10)	NA	Q52KD8	Chromatin modification-related protein MEAF6	AT4G14385.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os12g20310.2	"sarcoma antigen NY-SAR-91, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61296.4.S1_a_at	A	A1TS	POPTR_0005s24530	POPTR_0005s24530 (10)	scaffold_5:23058536-23058931(+) (10)	NA	Q52KD8	Chromatin modification-related protein MEAF6	AT4G14385.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os12g20310.2	"sarcoma antigen NY-SAR-91, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61296.4.S1_at	A	A1MS	POPTR_0005s24530	POPTR_0005s24530 (10)	scaffold_5:23058312-23058536(+) (10)	NA	Q52KD8	Chromatin modification-related protein MEAF6	AT4G14385.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os12g20310.2	"sarcoma antigen NY-SAR-91, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.613.1.A1_at	A	A1TS	POPTR_0014s10190	POPTR_0014s10190 (11)	scaffold_14:7640801-7641415(+) (11)	NA	Q9M128	Transcription factor bHLH57	AT4G01460.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g52190.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr3g150170.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.61312.1.A1_at	A	A1TS	POPTR_0016s05850	POPTR_0016s05850 (11)	scaffold_16:3775884-3776347(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g53360.1	expressed protein	Medtr7g112050.1	WRC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61314.1.A1_at	A	A1TS	POPTR_0008s01110	POPTR_0008s01110 (10)	scaffold_8:536950-538140(+) (10)	NA	Q94BZ1	Protein ZINC INDUCED FACILITATOR-LIKE 1	AT5G13750.1	zinc induced facilitator-like 1 	LOC_Os12g03899.3	"major facilitator superfamily antiporter, putative, expressed"	Medtr8g073830.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61319.1.A1_at	A	A1TS	POPTR_0005s14250	POPTR_0005s14250 (11)	scaffold_5:11359308-11359997(+) (11)	NA	P53681	CDPK-related protein kinase	AT3G50530.1	CDPK-related kinase 	LOC_Os07g44710.1	"CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g129190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.61336.1.A1_at	A	A1TS	POPTR_0002s06550	POPTR_0002s06550 (11)	scaffold_2:4370406-4370676(+) (11)	NA	NA	NA	AT1G22790.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g40700.1	expressed protein	Medtr1g124750.1	"T22J18.4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61338.1.S1_at	A	A1MS	POPTR_0014s07790	POPTR_0014s07790 (11)	scaffold_14:5819708-5820658(-) (11)	NA	NA	NA	AT2G45850.2	AT hook motif DNA-binding family protein 	LOC_Os02g57820.1	"AT hook motif domain containing protein, expressed"	Medtr7g084950.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
PtpAffx.61345.1.S1_at	A	A1TS	POPTR_0007s07520	POPTR_0007s07520 (11)	scaffold_7:5888051-5888782(+) (11)	NA	Q8LD49	"Thioredoxin X, chloroplastic"	AT1G50320.1	thioredoxin X 	LOC_Os04g57930.1	"thioredoxin, putative, expressed"	Medtr1g143570.1	Thioredoxin; Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.61378.1.S1_at	A	A1TS	POPTR_0004s13450	POPTR_0004s13450 (9)	scaffold_4:13515721-13516419(+) (9)	NA	Q96SZ5	2-aminoethanethiol dioxygenase	AT5G39890.1	Protein of unknown function (DUF1637) 	LOC_Os05g51470.1	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g009090.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.61387.1.A1_at	A	A1TS	POPTR_0009s13420	POPTR_0009s13420 (10)	scaffold_9:10673875-10674375(+) (10)	NA	P34024	1-phosphatidylinositol phosphodiesterase	AT4G38690.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os09g36520.1	"ki1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61388.1.A1_at	A	A1TS	POPTR_0008s16350	POPTR_0008s16350 (9)	scaffold_8:10960300-10960869(+) (9)	NA	NA	NA	AT5G52070.1	Agenet domain-containing protein 	LOC_Os05g04860.1	"agenet domain containing protein, putative, expressed"	Medtr4g032970.1	Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.61407.1.A1_at	A	A1MS	POPTR_0001s02480	POPTR_0001s02480 (10)	scaffold_1:1926064-1926544(+) (10)	NA	NA	NA	AT2G35230.1	VQ motif-containing protein 	NA	NA	Medtr8g078580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61430.1.A1_s_at	A	A1TS	POPTR_0018s08970	POPTR_0018s08970 (11)	scaffold_18:9871721-9871789(-) (11)	NA	NA	NA	AT4G28990.2	RNA-binding protein-related 	LOC_Os02g17470.2	"RNA-binding protein-related, putative, expressed"	Medtr6g099320.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.61442.1.A1_at	A	A1TS	POPTR_0006s26370	POPTR_0006s26370 (10)	scaffold_6:24594765-24595257(+) (10)	NA	Q84MB2	Protein TIFY 8	AT4G32570.1	TIFY domain protein 8 	NA	NA	Medtr3g136210.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61459.1.A1_at	A	A1TS	POPTR_0010s22330	POPTR_0010s22330 (11)	scaffold_10:19306760-19308252(+) (11)	NA	Q03441	Sporulation protein RMD1	AT5G13610.1	Protein of unknown function (DUF155) 	LOC_Os07g49410.1	"uncharacterized ACR, YagE family COG1723 containing protein, expressed"	Medtr5g046070.1	Protein of unknown function DUF155 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61485.1.A1_at	A	A1TS	POPTR_0005s21810	POPTR_0005s21810 (11)	scaffold_5:20881349-20881432(-) (11)	NA	NA	NA	AT1G22790.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g40700.1	expressed protein	Medtr1g124750.1	"T22J18.4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61485.1.A1_s_at	A	A1TS	POPTR_0005s21810	POPTR_0005s21810 (11)	scaffold_5:20881419-20881635(-) (11)	NA	NA	NA	AT1G22790.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g40700.1	expressed protein	Medtr1g124750.1	"T22J18.4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61511.1.A1_at	A	A1TS	POPTR_0016s06170	POPTR_0016s06170 (11)	scaffold_16:4104155-4105027(-) (11)	NA	Q8W0Z9	Carbon catabolite repressor protein 4 homolog 1	AT3G58560.1	DNAse I-like superfamily protein 	LOC_Os10g27230.3	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC235488_23.1	Endonuclease/exonuclease/phosphatase AC235488.1 111535-108488 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61514.1.A1_at	A	A1TS	POPTR_0013s04220	POPTR_0013s04220 (11)	scaffold_13:2811446-2811685(+) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr2g088220.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.61529.1.A1_at	A	A1TS	POPTR_0016s01430	POPTR_0016s01430 (10)	scaffold_16:653568-653900(+) (10)	NA	Q9SU29	E3 ubiquitin-protein ligase UPL5	AT4G12570.1	ubiquitin protein ligase 5 	LOC_Os09g31090.2	"HECT-domain domain containing protein, expressed"	Medtr8g147800.1	HECT; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.61543.1.A1_at	A	A1TS	POPTR_0008s01090	POPTR_0008s01090 (9)	scaffold_8:513709-514112(+) (9)	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT1G16880.1	uridylyltransferase-related 	LOC_Os08g14440.1	"uridylyltransferase-related, putative, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61544.1.A1_at	A	A1TS	POPTR_0007s02070	POPTR_0007s02070 (11)	scaffold_7:1217464-1219209(-) (11)	NA	O24304	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	AT3G59380.1	farnesyltransferase A 	LOC_Os09g33930.3	"farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed"	Medtr2g118180.1	Protein prenyltransferase 	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity	NA
PtpAffx.61554.1.S1_s_at	A	A1TS	POPTR_0003s13840	POPTR_0003s13840 (11)	scaffold_3:14095854-14096805(-) (11)	NA	Q8H0Y8	Probable WRKY transcription factor 41	AT4G11070.1	WRKY family transcription factor 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.61572.1.S1_at	A	A1TS	POPTR_0008s10240	POPTR_0008s10240 (11)	scaffold_8:6415736-6417158(-) (11)	POPTR_0010s15800 (8)	Q9SEE5	Galactokinase	AT3G06580.1	Mevalonate/galactokinase family protein 	LOC_Os03g61710.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr8g136890.1	GHMP kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.61572.2.S1_a_at	A	A1TS	POPTR_0008s10240	POPTR_0008s10240 (11)	scaffold_8:6417168-6417802(-) (11)	POPTR_0010s15800 (8)	Q9SEE5	Galactokinase	AT3G06580.1	Mevalonate/galactokinase family protein 	LOC_Os03g61710.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr8g136890.1	GHMP kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.6158.1.S1_s_at	A	A1TS	POPTR_0002s04120	POPTR_0002s04120 (11)	scaffold_2:2571161-2572151(+) (11)	NA	NA	NA	AT2G31270.1	homolog of yeast CDT1 A 	LOC_Os04g10650.1	"CDT1A - Putative DNA replication initiation protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61580.1.S1_at	A	A1TS	POPTR_0009s10050	POPTR_0009s10050 (11)	scaffold_9:8736819-8738870(+) (11)	NA	Q39211	DNA-directed RNA polymerase II subunit RPB3-A	AT2G15430.1	DNA-directed RNA polymerase family protein 	LOC_Os09g02284.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr4g114420.1	"RNA polymerase, dimerisation "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.61626.2.S1_a_at	A	A1TS	POPTR_0001s08050	POPTR_0001s08050 (11)	scaffold_1:6121478-6123664(-) (11)	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT4G12110.1	sterol-4alpha-methyl oxidase 1-1 	LOC_Os10g39810.1	"fatty acid hydroxylase, putative, expressed"	Medtr8g106630.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.6163.1.S1_at	A	A1TS	POPTR_0008s08440	POPTR_0008s08440 (10)	scaffold_8:5236248-5237016(+) (10)	NA	P93472	Cell elongation protein diminuto	AT3G19820.3	cell elongation protein / DWARF1 / DIMINUTO (DIM) 	LOC_Os10g25780.1	"FAD-linked oxidoreductase protein, putative, expressed"	NA	NA	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.6163.2.A1_at	A	A1TA	POPTR_0010s17710	POPTR_0010s17710 (11)	scaffold_10:16200738-16201218(-) (11)	POPTR_0008s08440 (8)	P93472	Cell elongation protein diminuto	AT3G19820.3	cell elongation protein / DWARF1 / DIMINUTO (DIM) 	LOC_Os10g25780.1	"FAD-linked oxidoreductase protein, putative, expressed"	NA	NA	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.61669.1.S1_at	A	A1TS	POPTR_0010s23010	POPTR_0010s23010 (10)	scaffold_10:19706503-19707632(-) (10)	NA	O82632	GATA transcription factor 9	AT4G32890.1	GATA transcription factor 9 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr1g120760.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.61679.1.S1_at	A	A1TS	POPTR_0022s00300	POPTR_0022s00300 (11)	scaffold_22:56050-56330(+) (11)	NA	NA	NA	AT1G57680.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g66190.2	expressed protein	Medtr2g005140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61725.1.S1_s_at	A	A1TS	POPTR_0012s07560	POPTR_0012s07560 (11)	scaffold_12:8483995-8484405(-) (11)	NA	Q869R9	Myb-like protein J	AT1G19000.2	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61748.1.S1_at	A	A1TS	POPTR_0013s03680	POPTR_0013s03680 (11)	scaffold_13:2350161-2350629(+) (11)	NA	Q9USM7	Mitochondrial import inner membrane translocase subunit tim23	AT3G04800.1	translocase inner membrane subunit 23-3 	LOC_Os03g02390.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr1g096270.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.618.1.S1_x_at	A	A1TS	POPTR_0013s13480	POPTR_0013s13480 (11)	scaffold_13:13951889-13952114(+) (11)	NA	O24058	Metallothionein-like protein type 2	AT3G09390.1	metallothionein 2A 	NA	NA	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
PtpAffx.618.2.S1_a_at	A	A1TS	POPTR_0001s03260	POPTR_0001s03260 (11)	scaffold_1:2671839-2672582(-) (11)//scaffold_1:5799729-5800468(-) (11)	POPTR_0001s07670 (7)	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
PtpAffx.618.2.S1_x_at	A	A2TS	POPTR_0001s03260	POPTR_0001s03260 (11)//POPTR_0001s07670 (10)	scaffold_1:2671841-2672617(-) (11)//scaffold_1:5799731-5800503(-) (11)	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
PtpAffx.618.8.S1_at	A	A1TA	POPTR_0003s01470	POPTR_0003s01470 (11)	scaffold_3:1341416-1341584(+) (11)	NA	Q8DI01	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	AT5G10160.1	Thioesterase superfamily protein 	LOC_Os05g36000.1	"FabA-like domain containing protein, expressed"	Medtr2g008690.1	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.618.9.S1_s_at	A	A2TS	POPTR_0001s21740	POPTR_0003s01450 (11)//POPTR_0001s21740 (11)	scaffold_1:20256231-20256338(-) (11)//scaffold_3:1341623-1341730(+) (11)	NA	P27524	"Chlorophyll a-b binding protein CP24 10A, chloroplastic"	AT1G15820.1	light harvesting complex photosystem II subunit 6 	LOC_Os04g38410.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g008680.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.61813.1.A1_at	A	A2MS	POPTR_0704s00200	POPTR_0704s00200 (11)//POPTR_0015s08350 (9)	scaffold_15:9602937-9603170(+) (9)//scaffold_704:4593-4826(-) (11)	NA	NA	NA	AT5G62575.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os09g21470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61842.1.A1_at	A	A1TS	POPTR_0017s14480	POPTR_0017s14480 (11)	scaffold_17:14510939-14511304(-) (11)	NA	Q9FWA4	Probable galacturonosyltransferase 9	AT3G02350.1	galacturonosyltransferase 9 	LOC_Os02g29530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	AC146721_10.1	"Glycosyl transferase, family 8 AC146721.7 49734-45961 E EGN_Mt090430 200"	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.61857.1.S1_at	A	A1TS	POPTR_0016s06110	POPTR_0016s06110 (11)	scaffold_16:4063553-4064888(+) (11)	NA	Q9FDZ9	60S ribosomal protein L21-2	AT1G57860.1	Translation protein SH3-like family protein 	LOC_Os10g32820.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.61872.1.S1_s_at	A	A1TS	POPTR_0010s05570	POPTR_0010s05570 (11)	scaffold_10:7011510-7012329(-) (11)	NA	Q07123	Copper methylamine oxidase	AT2G42490.1	Copper amine oxidase family protein 	LOC_Os04g40040.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr3g114690.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.61876.1.A1_at	A	A1TS	POPTR_0002s19620	POPTR_0002s19620 (11)	scaffold_2:15570961-15571200(+) (11)	NA	Q9S834	"ATP-dependent Clp protease proteolytic subunit 5, chloroplastic"	AT1G02560.1	nuclear encoded CLP protease 5 	LOC_Os03g19510.1	"OsClp4 - Putative Clp protease homologue, expressed"	Medtr1g106610.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.61879.1.S1_at	A	A1TS	POPTR_0001s07810	POPTR_0001s07810 (11)	scaffold_1:5899227-5900980(+) (11)	NA	NA	NA	AT1G62790.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g47200.1	"LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106370.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6190.1.S1_a_at	A	A1TS	POPTR_0006s14160	POPTR_0006s14160 (9)	scaffold_6:11486472-11486607(-) (9)	NA	Q9LMA8	Protein TIFY 10A	AT1G19180.1	jasmonate-zim-domain protein 1 	LOC_Os07g42370.2	"zinc-finger protein, putative, expressed"	Medtr2g049880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6190.1.S1_x_at	A	A1TS	POPTR_0006s14160	POPTR_0006s14160 (11)	scaffold_6:11486303-11487141(-) (11)	NA	Q9LMA8	Protein TIFY 10A	AT1G19180.1	jasmonate-zim-domain protein 1 	LOC_Os07g42370.2	"zinc-finger protein, putative, expressed"	Medtr2g049880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6190.2.S1_at	A	A1MS	POPTR_0006s14160	POPTR_0006s14160 (11)	scaffold_6:11486593-11486745(-) (11)	NA	Q9LMA8	Protein TIFY 10A	AT1G19180.1	jasmonate-zim-domain protein 1 	LOC_Os07g42370.2	"zinc-finger protein, putative, expressed"	Medtr2g049880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61932.1.A1_at	A	A1TS	POPTR_0017s12590	POPTR_0017s12590 (11)	scaffold_17:12802124-12802609(+) (11)	NA	NA	NA	AT3G01060.1	unknown protein; Has 640 Blast hits to 638 proteins in 201 species: Archae - 0; Bacteria - 293; Metazoa - 0; Fungi - 71; Plants - 72; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). 	LOC_Os05g43650.1	expressed protein	Medtr6g013900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6197.1.S1_at	A	A1TS	POPTR_0008s04910	POPTR_0008s04910 (10)	scaffold_8:2841052-2841410(-) (10)	NA	NA	NA	AT2G28670.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g17220.1	"dirigent, putative, expressed"	Medtr7g021120.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61990.1.S1_at	A	A1TS	POPTR_0007s00360	POPTR_0007s00360 (11)	scaffold_7:114373-115685(+) (11)	NA	NA	NA	AT2G31840.1	Thioredoxin superfamily protein 	LOC_Os05g34470.1	expressed protein	Medtr4g134500.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61991.2.S1_s_at	A	A1TS	POPTR_0001s01420	POPTR_0001s01420 (11)	scaffold_1:1073874-1074302(-) (11)	NA	NA	NA	AT4G19100.1	Protein of unknown function (DUF3464) 	LOC_Os06g21530.1	expressed protein	Medtr5g027230.1	"predicted membrane protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61996.1.S1_at	A	A1TS	POPTR_0014s01480	POPTR_0014s01480 (11)	scaffold_14:1414583-1415126(+) (11)	NA	NA	NA	AT1G58420.1	Uncharacterised conserved protein UCP031279 	NA	NA	Medtr1g022900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62002.1.S1_at	A	A1TS	POPTR_0018s14050	POPTR_0018s14050 (9)	scaffold_18:14298056-14298323(-) (9)	NA	NA	NA	NA	NA	LOC_Os06g48680.1	expressed protein	Medtr2g042490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62025.1.S1_at	A	A1TS	POPTR_0014s03640	POPTR_0014s03640 (11)	scaffold_14:2897303-2897620(-) (11)	NA	Q6DFI2	Transmembrane protein 147	AT1G47640.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2053, membrane (InterPro:IPR019164); Has 204 Blast hits to 204 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). "	LOC_Os03g55730.1	"SSA2 - 2S albumin seed storage family protein precursor, putative, expressed"	Medtr3g148750.1	"Transmembrane protein 147, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62041.1.S1_at	A	A1MS	POPTR_0014s11320	POPTR_0014s11320 (10)	scaffold_14:8424076-8424475(-) (10)	NA	O22899	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G62310.1	RNA helicase family protein 	LOC_Os03g19960.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr1g106350.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.62055.1.S1_at	A	A1TS	POPTR_0004s04800	POPTR_0004s04800 (10)	scaffold_4:3564939-3565435(-) (10)	NA	NA	NA	AT2G33855.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g39950.1	expressed protein	Medtr2g017950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6206.1.A1_at	A	A1TS	POPTR_0014s07580	POPTR_0014s07580 (11)	scaffold_14:5694103-5694786(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.62071.1.S1_at	A	A1TS	POPTR_0011s16080	POPTR_0011s16080 (10)	scaffold_11:18041502-18043129(+) (10)	NA	Q5PP70	Alpha N-terminal protein methyltransferase 1	AT5G44450.1	methyltransferases 	LOC_Os03g56830.2	"ad-003, putative, expressed"	AC235662_21.1	"Protein of unknown function DUF858, methyltransferase-like AC235662.1 88270-95035 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.62121.1.S1_at	A	A1TS	POPTR_0002s03400	POPTR_0002s03400 (11)	scaffold_2:2111894-2112214(+) (11)	NA	P24280	SEC14 cytosolic factor	AT2G21520.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g04020.1	expressed protein	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62134.1.S1_at	A	A1TS	POPTR_0001s34180	POPTR_0001s34180 (11)	scaffold_1:32309968-32310918(+) (11)	NA	Q8W575	COP9 signalosome complex subunit 3	AT5G14250.1	Proteasome component (PCI) domain protein 	LOC_Os08g02550.1	"proteasome subunit, putative, expressed"	Medtr6g025220.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62151.1.A1_at	A	A1TS	POPTR_0013s14200	POPTR_0013s14200 (11)	scaffold_13:14498506-14499000(-) (11)	NA	P53603	Formimidoyltransferase-cyclodeaminase	AT2G20830.2	transferases;folic acid binding 	LOC_Os06g03740.1	"folic acid binding protein, putative, expressed"	Medtr8g102530.1	Formiminotransferase 	GO:0008152|metabolic process	GO:0005542|folic acid binding||GO:0016740|transferase activity	NA
PtpAffx.62154.1.S1_at	A	A1TS	POPTR_0016s14720	POPTR_0016s14720 (10)	scaffold_16:13886396-13886847(+) (11)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT5G01950.1	Leucine-rich repeat protein kinase family protein 	LOC_Os05g40270.5	expressed protein	Medtr7g080530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.62170.1.A1_at	A	A1TS	POPTR_0002s19870	POPTR_0002s19870 (11)	scaffold_2:15805433-15809301(-) (11)	NA	Q9ZSZ8	FKBP12-interacting protein of 37 kDa	AT3G54170.1	FKBP12 interacting protein 37 	LOC_Os06g27970.1	"FKBP12-interacting protein of 37 kDa, putative, expressed"	Medtr3g114510.1	"FKBP12-interacting protein of 37 kDa, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62174.1.S1_at	A	A1TS	POPTR_0001s02350	POPTR_0001s02350 (10)	scaffold_1:1777227-1778327(+) (10)	NA	Q56XR0	Transcription factor bHLH71	AT5G46690.1	beta HLH protein 71 	LOC_Os02g46560.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr8g078090.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.6218.1.S1_at	A	A1TS	POPTR_0003s12190	POPTR_0003s12190 (10)	scaffold_3:12855429-12855903(-) (10)	NA	Q9LN77	F-box protein PP2-A12	AT1G12710.1	phloem protein 2-A12 	LOC_Os03g02550.1	"OsFBX76 - F-box domain containing protein, expressed"	Medtr5g010960.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62182.1.S1_a_at	A	A1TS	POPTR_0012s04560	POPTR_0012s04560 (11)	scaffold_12:3853401-3853890(-) (11)	NA	Q9LDY5	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 5, chloroplastic"	AT1G18170.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os03g50080.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g155180.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.62250.1.A1_at	A	A1TS	POPTR_0016s10970	POPTR_0016s10970 (11)	scaffold_16:9387119-9389424(-) (11)	NA	Q9LM71	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic"	AT3G10060.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g09040.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr1g073910.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.6229.1.A1_at	A	A1TS	POPTR_0002s22220	POPTR_0002s22220 (9)	scaffold_2:18890467-18890499(-) (9)	NA	P27518	"Chlorophyll a-b binding protein 151, chloroplastic"	AT2G05070.1	photosystem II light harvesting complex gene 2.2 	LOC_Os03g39610.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g104980.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.6229.2.S1_at	A	A1TS	POPTR_0014s16300	POPTR_0014s16300 (10)	scaffold_14:12402395-12402521(-) (11)	NA	P27518	"Chlorophyll a-b binding protein 151, chloroplastic"	AT2G05100.1	photosystem II light harvesting complex gene 2.1 	LOC_Os03g39610.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g104980.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.6229.3.S1_s_at	A	A2TS	POPTR_0002s22220	POPTR_0002s22220 (10)//POPTR_0014s16300 (10)	scaffold_14:12403157-12403781(-) (10)//scaffold_2:18891287-18892094(-) (10)	NA	P27518	"Chlorophyll a-b binding protein 151, chloroplastic"	AT2G05070.1	photosystem II light harvesting complex gene 2.2 	LOC_Os03g39610.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g104980.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.62303.1.S1_at	A	A1TS	POPTR_0010s06510	POPTR_0010s06510 (11)	scaffold_10:7857799-7858517(+) (11)	NA	Q9FX53	Trihelix transcription factor GT-1	AT1G13450.1	Homeodomain-like superfamily protein 	LOC_Os04g40930.1	"MYB family transcription factor, putative, expressed"	Medtr3g103160.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62336.1.A1_at	A	A1TS	POPTR_0013s06690	POPTR_0013s06690 (11)	scaffold_13:5409719-5410968(+) (11)	NA	Q9SDX3	UTP--glucose-1-phosphate uridylyltransferase	AT3G03250.1	UDP-GLUCOSE PYROPHOSPHORYLASE 1 	LOC_Os02g02560.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	Medtr3g163770.1	Ribosomal protein S2; UTP--glucose-1-phosphate uridylyltransferase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0016779|nucleotidyltransferase activity	GO:0005840|ribosome
PtpAffx.62338.1.S1_s_at	A	A1TS	POPTR_0005s08980	POPTR_0005s08980 (11)	scaffold_5:6310665-6311311(-) (11)	NA	B5X4E0	Calumenin-B	AT5G08580.1	Calcium-binding EF hand family protein 	LOC_Os02g12880.4	"calcium-binding EF hand family protein, putative, expressed"	Medtr8g024400.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6236.1.A1_at	A	A1TS	POPTR_0010s21190	POPTR_0010s21190 (10)	scaffold_10:18564320-18565531(-) (10)	NA	Q55C17	"Trans-2,3-enoyl-CoA reductase"	AT3G55360.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os01g05670.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr5g094710.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.62367.1.S1_at	A	A1TS	POPTR_0006s19380	POPTR_0006s19380 (11)	scaffold_6:18429924-18432881(-) (11)	NA	O15818	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62380.1.S1_s_at	A	A1TS	POPTR_0010s19520	POPTR_0010s19520 (11)	scaffold_10:17400203-17400528(-) (11)	NA	Q9XEE6	Zinc finger CCCH domain-containing protein 29	AT2G40140.2	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g090250.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.62386.1.A1_at	A	A1TS	POPTR_0004s15020	POPTR_0004s15020 (11)	scaffold_4:15690525-15690836(-) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT1G19190.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.62400.1.A1_at	A	A1TS	POPTR_0001s01270	POPTR_0001s01270 (11)	scaffold_1:970537-970939(+) (11)	NA	Q12955	Ankyrin-3	AT4G19150.1	Ankyrin repeat family protein 	LOC_Os10g43040.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	Medtr5g026960.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62427.1.A1_at	A	A1TS	POPTR_0001s15260	POPTR_0001s15260 (11)	scaffold_1:12098199-12098707(+) (11)	NA	Q9F131	3-hydroxybenzoate 6-hydroxylase 1	AT2G35660.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os07g30960.1	"monooxygenase, putative, expressed"	Medtr5g013360.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62432.2.S1_s_at	A	A1TS	POPTR_0005s19450	POPTR_0005s19450 (10)	scaffold_5:18318422-18318536(+) (10)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT1G09910.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127440.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62433.1.A1_at	A	A1TS	POPTR_0012s01900	POPTR_0012s01900 (10)	scaffold_12:1485165-1486132(-) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G60470.1	Plant protein of unknown function (DUF247) 	LOC_Os11g34090.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62470.1.A1_at	A	A1TS	POPTR_0018s04080	POPTR_0018s04080 (11)	scaffold_18:3487227-3487745(+) (11)	NA	Q8CGZ0	Calcium homeostasis endoplasmic reticulum protein	AT4G31200.1	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein 	LOC_Os06g46880.1	"surp module family protein, putative, expressed"	Medtr1g117220.1	SWAP/Surp; Regulation of nuclear pre-mRNA protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.62472.1.A1_a_at	A	A1TS	POPTR_0009s01450	POPTR_0009s01450 (11)	scaffold_9:1730124-1730789(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62474.1.A1_at	A	A1TS	POPTR_0012s02420	POPTR_0012s02420 (11)	scaffold_12:1990317-1990792(-) (11)	NA	NA	NA	AT5G53050.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g46460.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g008980.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62481.1.A1_s_at	A	A1TS	POPTR_0002s00700	POPTR_0002s00700 (11)	scaffold_2:310278-310769(+) (11)	NA	Q9S735	Probable inorganic phosphate transporter 1-9	AT1G76430.1	phosphate transporter 1;9 	LOC_Os06g21950.1	"inorganic phosphate transporter, putative, expressed"	Medtr3g106620.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.6249.1.S1_at	A	A1TS	POPTR_0001s05600	POPTR_0001s05600 (11)	scaffold_1:4319788-4320061(-) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr2g117700.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.62507.1.S1_at	A	A1TS	POPTR_0009s10780	POPTR_0009s10780 (11)	scaffold_9:9163396-9163896(-) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g37060.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.62524.1.A1_s_at	A	A1TS	POPTR_0004s19600	POPTR_0004s19600 (11)	scaffold_4:19393077-19393214(+) (11)	NA	Q93ZB9	Fatty acyl-CoA reductase 3	AT4G33790.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62528.1.S1_at	A	A1TS	POPTR_0004s04210	POPTR_0004s04210 (11)	scaffold_4:3030392-3031712(+) (11)	NA	NA	NA	AT3G15390.1	silencing defective 5 	LOC_Os02g42670.1	"DUF1771 domain containing protein, putative, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62549.1.A1_at	A	A1TS	POPTR_0013s13460	POPTR_0013s13460 (11)	scaffold_13:13928113-13928682(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g28670.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr5g036270.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.62565.1.A1_at	A	A1MS	POPTR_0017s02600	POPTR_0017s02600 (9)	scaffold_17:1878878-1879168(-) (9)	NA	Q9FME4	"Pentatricopeptide repeat-containing protein At5g60960, mitochondrial"	AT5G60960.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g41260.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g143860.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62567.1.A1_at	A	A1TS	POPTR_0002s02280	POPTR_0002s02280 (11)	scaffold_2:1285362-1285843(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62573.1.A1_at	A	A1TS	POPTR_0017s09510	POPTR_0017s09510 (11)	scaffold_17:4866559-4867003(+) (9)//scaffold_17:8130742-8131171(-) (11)	POPTR_0017s06340 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62585.1.A1_at	A	A1TS	POPTR_0011s07670	POPTR_0011s07670 (11)	scaffold_11:8508746-8509090(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62600.1.A1_at	A	A1TS	POPTR_0001s46120	POPTR_0001s46120 (9)	scaffold_1:46579567-46579912(-) (9)	NA	P29057	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g024810.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
PtpAffx.62615.2.A1_at	A	A1MS	POPTR_0013s07960	POPTR_0013s07960 (10)	scaffold_13:6891793-6892216(-) (10)	NA	NA	NA	AT5G17165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03150.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g50970.1	"seed specific protein Bn15D1B, putative, expressed"	Medtr5g008260.1	"seed specific protein Bn15D1B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62633.3.A1_a_at	A	A1TS	POPTR_0014s14670	POPTR_0014s14670 (11)	scaffold_14:10738030-10738745(+) (11)	NA	P31828	Probable zinc protease pqqL	AT5G42390.1	Insulinase (Peptidase family M16) family protein 	LOC_Os06g41990.2	"M16 domain containing zinc peptidase, putative, expressed"	Medtr5g007490.1	"Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.62678.1.A1_at	A	A1TS	POPTR_0009s02090	POPTR_0009s02090 (10)	scaffold_9:2707133-2707776(+) (11)	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT5G22050.2	Protein kinase superfamily protein 	LOC_Os07g06570.1	"receptor protein kinase CRINKLY4 precursor, putative, expressed"	Medtr2g104720.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62680.1.A1_at	A	A1TS	POPTR_0018s03590	POPTR_0018s03590 (11)	scaffold_18:3103716-3104074(+) (11)	NA	Q8LAW2	F-box protein AFR	AT2G24540.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os07g05880.2	"OsFBK18 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g133280.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62681.1.A1_at	A	A1TS	POPTR_0011s03730	POPTR_0011s03730 (9)	scaffold_11:3814785-3815090(-) (11)	NA	Q39086	Receptor-like serine/threonine-protein kinase SD1-7	AT1G65790.1	receptor kinase 1 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124560.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62683.1.A1_at	A	A1TS	POPTR_0009s08390	POPTR_0009s08390 (11)	scaffold_9:7700582-7701119(+) (11)	NA	NA	NA	AT5G64480.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g010240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62688.2.A1_at	A	A1TS	POPTR_0002s15370	POPTR_0002s15370 (11)	scaffold_2:11506619-11506927(-) (11)	NA	B0JYZ2	Peroxisomal membrane protein PEX16	AT2G45690.1	shrunken seed protein (SSE1) 	LOC_Os02g03070.1	"SSE1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6271.1.S1_at	A	A1TS	POPTR_0013s10260	POPTR_0013s10260 (9)	scaffold_13:10267281-10267741(-) (9)	NA	NA	NA	AT4G10000.2	Thioredoxin family protein 	LOC_Os08g44400.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr3g013180.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.62726.1.A1_at	A	A1TS	POPTR_0014s06550	POPTR_0014s06550 (11)	scaffold_14:4969790-4970208(-) (11)	POPTR_0002s14950 (6)	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os08g02490.1	"AT hook motif domain containing protein, expressed"	Medtr8g106590.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62729.1.A1_at	A	A1TS	POPTR_0002s14750	POPTR_0002s14750 (11)	scaffold_2:10949159-10949581(+) (11)	NA	O81312	UDP-glucuronate 4-epimerase 3	AT4G00110.1	UDP-D-glucuronate 4-epimerase 3 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr4g025510.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.6273.1.S1_at	A	A1TS	POPTR_0019s03090	POPTR_0019s03090 (11)	scaffold_19:3107383-3107882(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.62739.1.A1_s_at	A	A2TS	POPTR_0005s24590	POPTR_0005s24590 (11)//POPTR_0002s03940 (9)	scaffold_2:2463845-2467230(+) (9)//scaffold_5:23085958-23087806(-) (11)	NA	O35094	Mitochondrial import inner membrane translocase subunit TIM44	AT2G36070.1	translocase inner membrane subunit 44-2 	LOC_Os07g22700.2	"tim44-like domain containing protein, expressed"	Medtr2g097620.1	"Mitochondrial import inner membrane translocase, subunit Tim44 "	GO:0006886|intracellular protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0005744|mitochondrial inner membrane presequence translocase complex
PtpAffx.62753.1.A1_at	A	A1TS	POPTR_0017s06050	POPTR_0017s06050 (9)	scaffold_17:4686342-4686471(-) (9)	NA	Q84RR0	Probable E3 ubiquitin-protein ligase ARI7	AT2G31510.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.62756.1.A1_at	A	A3TS	POPTR_0003s00980	POPTR_0022s00220 (11)//POPTR_0022s00200 (11)//POPTR_0003s00980 (11)	scaffold_22:3364-3580(-) (11)//scaffold_22:16509-16724(-) (11)//scaffold_3:771743-771958(-) (11)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.62756.1.A1_s_at	A	A4TS	POPTR_0003s00980	POPTR_0022s00220 (11)//POPTR_0022s00200 (11)//POPTR_0003s00980 (11)//POPTR_0003s00990 (10)	scaffold_22:3567-3912(-) (11)//scaffold_22:16711-17056(-) (11)//scaffold_3:771945-772290(-) (11)//scaffold_3:790117-790462(-) (11)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.62761.1.A1_at	A	A1TS	POPTR_0006s29300	POPTR_0006s29300 (9)	scaffold_6:26712650-26714057(-) (11)	NA	Q9LXB4	Putative RNA methyltransferase At5g10620	AT5G10620.1	methyltransferases 	LOC_Os04g51786.1	"containing DUF163, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity	GO:0005737|cytoplasm
PtpAffx.62771.1.A1_at	A	A1TS	POPTR_0014s17480	POPTR_0014s17480 (11)	scaffold_14:13700080-13700503(+) (11)	NA	NA	NA	AT3G07510.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g09930.1	expressed protein	Medtr7g046740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62777.1.A1_at	A	A1TS	POPTR_0006s21370	POPTR_0006s21370 (11)	scaffold_6:20418194-20418760(-) (11)	NA	Q9NYP3	Protein downstream neighbor of Son	AT3G54750.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. 	LOC_Os12g42700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62789.1.A1_at	A	A1TS	POPTR_0001s26610	POPTR_0001s26610 (10)	scaffold_1:25595985-25596858(-) (10)	NA	Q9C6I8	Probable nucleolar GTP-binding protein 1	AT1G50920.1	Nucleolar GTP-binding protein 	LOC_Os07g01920.1	"nucleolar GTP-binding protein 1, putative, expressed"	Medtr8g021130.1	"Nucleolar GTP-binding 1; NOG, C-terminal "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.6279.1.S1_at	A	A1TS	POPTR_0002s18470	POPTR_0002s18470 (11)	scaffold_2:14373883-14375560(-) (11)	NA	NA	NA	AT2G46915.1	Protein of unknown function (DUF3754) 	LOC_Os06g01460.1	expressed protein	Medtr2g122490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62794.1.S1_at	A	A1TS	POPTR_0003s15100	POPTR_0003s15100 (11)	scaffold_3:14955982-14956577(-) (11)	NA	Q08448	Putative lipase YOR059C	AT5G51180.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g04810.1	"serine esterase family protein, putative, expressed"	Medtr1g059520.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62800.1.A1_at	A	A1TS	POPTR_0003s21920	POPTR_0003s21920 (11)	scaffold_3:19896579-19897129(+) (11)	POPTR_1037s00210 (6)	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g39930.1	"receptor-like protein kinase, putative"	Medtr5g013260.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.62804.1.S1_at	A	A1TS	POPTR_0018s00290	POPTR_0018s00290 (10)	scaffold_18:202864-203187(-) (10)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G25820.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	Medtr1g007520.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.62807.1.A1_at	A	A1TS	POPTR_0019s00330	POPTR_0019s00330 (10)	scaffold_19:111067-111593(+) (10)	NA	Q9C810	PHD finger protein At1g33420	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g65600.1	"PHD-finger domain containing protein, putative, expressed"	Medtr4g041260.1	"Protein of unknown function UPF0054; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62808.1.S1_at	A	A1TS	POPTR_0002s15850	POPTR_0002s15850 (11)	scaffold_2:11806533-11807041(-) (11)	NA	A0LE04	Bifunctional protein folD	AT4G00620.1	Amino acid dehydrogenase family protein 	LOC_Os02g02850.1	"bifunctional protein folD, putative, expressed"	Medtr7g084430.1	Tetrahydrofolate dehydrogenase/cyclohydrolase 	GO:0044281|small molecule metabolic process||GO:0009396|folic acid and derivative biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.6281.1.A1_at	A	A1TS	POPTR_0003s10110	POPTR_0003s10110 (10)	scaffold_3:11215926-11216282(+) (10)	NA	Q941F1	"Phospholipase A1-Igamma1, chloroplastic"	AT2G42690.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g51360.1	"lipase, putative, expressed"	Medtr4g109960.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.62818.1.S1_at	A	A1TS	POPTR_0010s19170	POPTR_0010s19170 (11)	scaffold_10:17162612-17163078(+) (11)	NA	Q8BX80	Cytosolic endo-beta-N-acetylglucosaminidase	AT3G11040.1	Glycosyl hydrolase family 85  	LOC_Os05g27960.1	"hydrolase, acting on glycosyl bonds, putative, expressed"	Medtr3g094820.1	"Glycoside hydrolase, family 85 "	NA	GO:0033925|mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	GO:0005737|cytoplasm
PtpAffx.62839.2.S1_at	A	A1TS	POPTR_0001s14560	POPTR_0001s14560 (11)	scaffold_1:11424515-11425447(+) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62869.1.S1_at	A	A1TS	POPTR_0001s31800	POPTR_0001s31800 (11)	scaffold_1:30164799-30165074(-) (11)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os02g36340.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr4g120840.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
PtpAffx.62873.1.S1_at	A	A1TS	POPTR_0008s13830	POPTR_0008s13830 (11)	scaffold_8:9120710-9120903(+) (11)	NA	NA	NA	AT1G14710.2	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g13560.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62886.1.A1_at	A	A1TS	POPTR_0003s13370	POPTR_0003s13370 (11)	scaffold_3:13766384-13766656(-) (11)	NA	Q9FE38	Potassium transporter 3	AT4G23640.1	Potassium transporter family protein 	LOC_Os01g70940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.6289.1.A1_a_at	A	A1TS	POPTR_0010s17380	POPTR_0010s17380 (11)	scaffold_10:15989460-15989858(-) (11)	NA	O13737	Uncharacterized endoplasmic reticulum membrane protein C16E8.02	AT1G18720.1	Protein of unknown function (DUF962) 	LOC_Os02g36870.1	"YGL010w, putative, expressed"	Medtr5g045060.1	Protein of unknown function DUF962 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6289.2.A1_a_at	A	A2TS	POPTR_0008s08830	POPTR_0008s08830 (11)//POPTR_0010s17380 (11)	scaffold_10:15989679-15989820(-) (11)//scaffold_8:5483822-5483971(+) (11)	NA	O13737	Uncharacterized endoplasmic reticulum membrane protein C16E8.02	AT1G18720.1	Protein of unknown function (DUF962) 	LOC_Os02g36870.1	"YGL010w, putative, expressed"	Medtr5g045060.1	Protein of unknown function DUF962 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6289.2.A1_at	A	A1TS	POPTR_0008s08830	POPTR_0008s08830 (11)	scaffold_8:5482155-5484251(+) (11)	NA	O13737	Uncharacterized endoplasmic reticulum membrane protein C16E8.02	AT1G18720.1	Protein of unknown function (DUF962) 	LOC_Os02g36870.1	"YGL010w, putative, expressed"	Medtr5g045060.1	Protein of unknown function DUF962 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6289.5.A1_at	A	A1MA	POPTR_0010s17370	POPTR_0010s17370 (11)	scaffold_10:15988958-15989277(-) (11)	NA	NA	NA	AT1G69500.1	"cytochrome P450, family 704, subfamily B, polypeptide 1 "	LOC_Os03g07250.1	"cytochrome P450, putative, expressed"	Medtr8g138890.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62893.2.A1_s_at	A	A2TS	POPTR_0014s18890	POPTR_0014s18890 (11)//POPTR_0002s24690 (9)	scaffold_14:16430374-16430573(+) (11)//scaffold_2:21978914-21979113(+) (11)	NA	NA	NA	AT5G48655.3	RING/U-box superfamily protein 	LOC_Os01g69040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62918.1.A1_a_at	A	A2TS	POPTR_0005s04040	POPTR_0005s04040 (11)//POPTR_0013s02780 (11)	scaffold_13:1679265-1679597(+) (11)//scaffold_5:2685626-2686045(-) (11)	NA	O23732	"Glutathione synthetase, chloroplastic"	AT5G27380.1	glutathione synthetase 2 	LOC_Os11g42350.3	"glutathione synthetase, chloroplast precursor, putative, expressed"	Medtr7g139670.1	"Eukaryotic glutathione synthase; Eukaryotic glutathione synthase, ATP-binding; "	GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004363|glutathione synthase activity||GO:0005524|ATP binding	NA
PtpAffx.62918.2.A1_at	A	A1TS	POPTR_0005s04040	POPTR_0005s04040 (11)	scaffold_5:2685206-2685620(-) (11)	NA	O23732	"Glutathione synthetase, chloroplastic"	AT5G27380.1	glutathione synthetase 2 	LOC_Os11g42350.3	"glutathione synthetase, chloroplast precursor, putative, expressed"	Medtr7g139670.1	"Eukaryotic glutathione synthase; Eukaryotic glutathione synthase, ATP-binding; "	GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004363|glutathione synthase activity||GO:0005524|ATP binding	NA
PtpAffx.62923.1.S1_s_at	A	A1TS	POPTR_0012s11870	POPTR_0012s11870 (11)	scaffold_12:12229268-12229722(-) (11)	NA	Q6PGS5	Transmembrane protein 56-B	AT1G31300.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os03g46410.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.62936.1.A1_s_at	A	A1TS	POPTR_0007s00490	POPTR_0007s00490 (11)	scaffold_7:192416-193021(+) (11)	NA	P48979	Polygalacturonase	AT3G59850.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr4g114910.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.62938.1.A1_at	A	A1TS	POPTR_0013s14640	POPTR_0013s14640 (10)	scaffold_13:14795439-14795967(-) (10)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G62930.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62940.1.A1_a_at	A	A2TS	POPTR_0013s07390	POPTR_0013s07390 (11)//POPTR_0013s07400 (11)	scaffold_13:6190928-6191029(-) (11)//scaffold_13:6200352-6200453(-) (11)	NA	Q42602	Cytochrome P450 89A2	AT1G64940.1	"cytochrome P450, family 87, subfamily A, polypeptide 6 "	LOC_Os10g36980.1	"transposon protein, putative, unclassified, expressed"	Medtr2g010350.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.62942.1.A1_at	A	A1TS	POPTR_0011s16740	POPTR_0011s16740 (9)	scaffold_11:18511842-18513013(-) (9)	NA	Q54PM7	N-acetyl-D-glucosamine kinase	AT1G30540.1	Actin-like ATPase superfamily protein 	LOC_Os09g04800.1	"ATPase BadF/BadG/BcrA/BcrD type, putative, expressed"	Medtr5g097220.1	"ATPase, BadF/BadG/BcrA/BcrD type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62956.1.A1_s_at	A	A1TS	POPTR_0002s10890	POPTR_0002s10890 (11)	scaffold_2:7942698-7943359(-) (11)	NA	Q9LSK9	Uncharacterized protein At5g65660	AT5G65660.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr5g076240.1	"hydroxyproline-rich glycoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62957.1.S1_at	A	A1TS	POPTR_0001s12680	POPTR_0001s12680 (11)	scaffold_1:9825682-9826188(+) (11)	NA	NA	NA	AT1G28190.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). 	LOC_Os11g33050.1	expressed protein	Medtr5g096870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62965.1.A1_at	A	A1TS	POPTR_0018s13680	POPTR_0018s13680 (11)	scaffold_18:13977014-13977546(+) (11)	NA	Q42191	Mitochondrial inner membrane protein OXA1	AT5G62050.1	homolog of yeast oxidase assembly 1 (OXA1) 	LOC_Os10g37690.1	"inner membrane protein, putative, expressed"	AC233677_14.1	60 kDa inner membrane insertion protein AC233677.2 80748-73714 E EGN_Mt090430 200	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.62972.1.A1_at	A	A1TS	POPTR_0014s05940	POPTR_0014s05940 (10)	scaffold_14:4451880-4452429(+) (10)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os04g46860.1	"scarecrow, putative, expressed"	Medtr4g029350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6298.3.S1_s_at	A	A1TS	POPTR_0005s25020	POPTR_0005s25020 (11)	scaffold_5:23390272-23390849(+) (11)	NA	NA	NA	AT1G19530.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g61150.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62991.1.S1_at	A	A1TS	POPTR_0008s01620	POPTR_0008s01620 (10)	scaffold_8:789864-790761(+) (10)	NA	NA	NA	AT4G32605.1	Mitochondrial glycoprotein family protein 	LOC_Os01g56460.1	"mitochondrial glycoprotein, putative, expressed"	Medtr5g100350.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
PtpAffx.63015.1.A1_at	A	A1TS	POPTR_0007s05910	POPTR_0007s05910 (11)	scaffold_7:4067316-4067791(+) (11)	NA	P14133	L-ascorbate oxidase	AT4G39830.1	Cupredoxin superfamily protein 	LOC_Os09g20090.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.6302.1.S1_s_at	A	A1TS	POPTR_0008s01000	POPTR_0008s01000 (11)	scaffold_8:468713-469117(-) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT1G17745.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os06g44460.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.6302.2.S1_s_at	A	A1TS	POPTR_0010s25600	POPTR_0010s25600 (11)	scaffold_10:21200958-21201042(+) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT1G17745.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os06g44460.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.63031.1.A1_at	A	A1TS	POPTR_0007s11100	POPTR_0007s11100 (10)	scaffold_7:11377818-11379322(+) (10)	NA	NA	NA	AT4G37020.1	BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g25000.1	expressed protein	Medtr5g017470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63033.1.A1_at	A	A2TS	POPTR_0018s13680	POPTR_0018s13680 (11)//POPTR_0513s00210 (11)	scaffold_18:13971616-13971746(+) (11)//scaffold_513:8727-8857(+) (11)	NA	Q42191	Mitochondrial inner membrane protein OXA1	AT5G62050.1	homolog of yeast oxidase assembly 1 (OXA1) 	LOC_Os10g37690.1	"inner membrane protein, putative, expressed"	AC233677_14.1	60 kDa inner membrane insertion protein AC233677.2 80748-73714 E EGN_Mt090430 200	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.63036.1.A1_at	A	A1TS	POPTR_0011s00560	POPTR_0011s00560 (11)	scaffold_11:270149-270413(+) (11)	NA	Q94B46	F-box/LRR-repeat protein At4g14096	AT4G14096.1	F-box/RNI-like superfamily protein 	LOC_Os10g03740.2	"OsFBX348 - F-box domain containing protein, expressed"	Medtr5g005860.1	Cyclin-like F-box; FBD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63057.1.A1_at	A	A1TS	POPTR_0009s06260	POPTR_0009s06260 (11)	scaffold_9:6074801-6075014(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.63065.1.A1_s_at	A	A1TS	POPTR_0011s04200	POPTR_0011s04200 (11)	scaffold_11:4229008-4229464(-) (11)	NA	Q570C0	Protein TRANSPORT INHIBITOR RESPONSE 1	AT3G62980.1	F-box/RNI-like superfamily protein 	LOC_Os04g32460.2	"OsFBL16 - F-box domain and LRR containing protein, expressed"	Medtr4g124940.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.6307.1.S1_at	A	A1TS	POPTR_0011s11190	POPTR_0011s11190 (11)	scaffold_11:13945873-13946156(+) (11)	NA	Q02909	"Phosphoenolpyruvate carboxylase, housekeeping isozyme"	AT3G14940.1	phosphoenolpyruvate carboxylase 3 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.63071.1.A1_at	A	A1TA	POPTR_0006s09160	POPTR_0006s09160 (11)	scaffold_6:6769458-6769630(-) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os01g62870.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.63072.1.A1_at	A	A1TS	POPTR_0010s13340	POPTR_0010s13340 (11)	scaffold_10:13180165-13180361(-) (11)	NA	P24021	Nuclease S1	AT1G68290.1	endonuclease 2 	LOC_Os01g03740.1	"nuclease PA3, putative, expressed"	Medtr1g140750.1	S1/P1 nuclease 	GO:0044265|cellular macromolecule catabolic process||GO:0006308|DNA catabolic process	GO:0003676|nucleic acid binding||GO:0004519|endonuclease activity	NA
PtpAffx.63074.1.S1_at	A	A1MS	POPTR_0016s09960	POPTR_0016s09960 (11)	scaffold_16:8093690-8094243(+) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g63150.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63075.1.A1_at	A	A1TS	POPTR_0013s06840	POPTR_0013s06840 (10)	scaffold_13:5530254-5530611(+) (10)	NA	NA	NA	AT5G17640.1	Protein of unknown function (DUF1005) 	LOC_Os08g06640.1	"stress-induced protein, putative, expressed"	Medtr5g005600.1	Protein of unknown function DUF1005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6308.1.S1_at	A	A1TS	POPTR_0001s10590	POPTR_0001s10590 (11)	scaffold_1:8234261-8235093(-) (11)	NA	Q9T0A0	Long chain acyl-CoA synthetase 4	AT4G23850.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g46750.1	"AMP-binding enzyme, putative, expressed"	Medtr5g009390.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.6310.1.A1_at	A	A1TS	POPTR_0002s14810	POPTR_0002s14810 (11)	scaffold_2:10981164-10981622(+) (11)	NA	NA	NA	AT3G60780.1	Protein of unknown function (DUF1442) 	LOC_Os02g25780.1	expressed protein	Medtr4g025300.1	Protein of unknown function DUF1442 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63114.1.S1_a_at	A	A3TS	POPTR_0008s01990	POPTR_0010s24660 (11)//POPTR_0008s01990 (11)//POPTR_0341s00200 (11)	scaffold_10:20752522-20753012(-) (11)//scaffold_341:4005-4691(+) (11)//scaffold_8:950842-951453(+) (11)	NA	Q99LX5	Multiple myeloma tumor-associated protein 2 homolog	AT3G52220.1	CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain (InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins in 346 species: Archae - 10; Bacteria - 184; Metazoa - 3955; Fungi - 1221; Plants - 712; Viruses - 24; Other Eukaryotes - 2776 (source: NCBI BLink). 	LOC_Os08g44440.1	"multiple myeloma tumor-associated protein 2, putative, expressed"	Medtr5g045250.1	"Multiple myeloma tumor-associated protein 2 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63114.1.S1_at	A	A1TS	POPTR_0010s24660	POPTR_0010s24660 (11)	scaffold_10:20752144-20752504(-) (11)	NA	Q99LX5	Multiple myeloma tumor-associated protein 2 homolog	AT3G52220.1	CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain (InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins in 346 species: Archae - 10; Bacteria - 184; Metazoa - 3955; Fungi - 1221; Plants - 712; Viruses - 24; Other Eukaryotes - 2776 (source: NCBI BLink). 	LOC_Os08g44440.1	"multiple myeloma tumor-associated protein 2, putative, expressed"	Medtr5g045250.1	"Multiple myeloma tumor-associated protein 2 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63114.2.S1_at	A	A1TS	POPTR_0008s01990	POPTR_0008s01990 (11)	scaffold_341:4861-5268(+) (10)//scaffold_8:951508-952030(+) (11)	NA	Q99LX5	Multiple myeloma tumor-associated protein 2 homolog	AT3G52220.1	CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain (InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins in 346 species: Archae - 10; Bacteria - 184; Metazoa - 3955; Fungi - 1221; Plants - 712; Viruses - 24; Other Eukaryotes - 2776 (source: NCBI BLink). 	LOC_Os08g44440.1	"multiple myeloma tumor-associated protein 2, putative, expressed"	Medtr5g045250.1	"Multiple myeloma tumor-associated protein 2 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63114.3.S1_at	A	A1MS	POPTR_0010s24660	POPTR_0010s24660 (11)	scaffold_10:20754031-20754368(-) (11)	NA	Q99LX5	Multiple myeloma tumor-associated protein 2 homolog	AT3G52220.1	CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain (InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins in 346 species: Archae - 10; Bacteria - 184; Metazoa - 3955; Fungi - 1221; Plants - 712; Viruses - 24; Other Eukaryotes - 2776 (source: NCBI BLink). 	LOC_Os08g44440.1	"multiple myeloma tumor-associated protein 2, putative, expressed"	Medtr5g045250.1	"Multiple myeloma tumor-associated protein 2 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63116.1.A1_s_at	A	A1TS	POPTR_0006s04850	POPTR_0006s04850 (11)	scaffold_6:3371988-3372577(-) (11)	NA	Q5ZKD5	RRP12-like protein	AT4G23540.1	ARM repeat superfamily protein 	LOC_Os01g72780.1	expressed protein	Medtr1g087200.1	"Protein of unknown function, NUC173 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63122.1.A1_at	A	A1TS	POPTR_0018s14030	POPTR_0018s14030 (11)	scaffold_18:14283106-14285358(+) (11)	NA	NA	NA	AT5G57230.1	Thioredoxin superfamily protein 	LOC_Os06g28740.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63122.2.S1_at	A	A1TS	POPTR_0006s07590	POPTR_0006s07590 (11)	scaffold_6:5514095-5516167(+) (11)	NA	NA	NA	AT5G57230.1	Thioredoxin superfamily protein 	LOC_Os06g28740.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63124.1.A1_at	A	A1TS	POPTR_0013s01560	POPTR_0013s01560 (11)	scaffold_13:888803-889239(-) (11)	NA	NA	NA	AT1G50830.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os12g29120.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr3g067850.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63135.1.A1_s_at	A	A1TS	POPTR_0010s22070	POPTR_0010s22070 (11)	scaffold_10:19137672-19137815(-) (11)	NA	NA	NA	AT5G13590.1	unknown protein; Has 150 Blast hits to 121 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). 	NA	NA	Medtr1g146260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63136.1.A1_at	A	A1TS	POPTR_0014s04250	POPTR_0014s04250 (11)	scaffold_14:3333061-3333616(-) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.63140.2.S1_s_at	A	A1TS	POPTR_0002s06640	POPTR_0002s06640 (11)	scaffold_2:4462903-4463310(+) (11)	NA	NA	NA	AT1G43130.1	like COV 2 	LOC_Os01g64780.2	"COV1, putative, expressed"	Medtr3g144480.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63140.3.A1_s_at	A	A1TS	POPTR_0002s06640	POPTR_0002s06640 (11)	scaffold_2:4464693-4466211(+) (11)	NA	NA	NA	AT1G43130.1	like COV 2 	LOC_Os01g64780.2	"COV1, putative, expressed"	Medtr3g144480.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63146.1.A1_at	A	A1TS	POPTR_0001s02190	POPTR_0001s02190 (11)	scaffold_1:1637037-1638061(+) (11)	NA	O23617	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5"	AT4G17770.1	trehalose phosphatase/synthase 5 	LOC_Os09g23350.1	"trehalose synthase, putative, expressed"	Medtr4g156760.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.63147.1.A1_at	A	A1TS	POPTR_0006s19630	POPTR_0006s19630 (11)	scaffold_6:18668110-18668275(-) (11)	NA	Q9SUI0	UPF0057 membrane protein At4g30660	AT4G30660.2	Low temperature and salt responsive protein family 	LOC_Os09g38560.1	"OsRCI2-11 - Hydrophobic protein OSR8, expressed"	Medtr8g145140.1	Protein of unknown function UPF0057 	NA	NA	GO:0016021|integral to membrane
PtpAffx.6315.2.S1_a_at	A	A1TS	POPTR_0002s02830	POPTR_0002s02830 (10)	scaffold_2:1729690-1729885(+) (10)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.63160.1.A1_s_at	A	A1TS	POPTR_0006s24460	POPTR_0006s24460 (11)	scaffold_6:23063918-23063965(+) (11)	NA	A4UVI1	Fatty acid desaturase 1	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	Medtr1g020170.1	Fatty acid desaturase/sphingolipid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.63173.1.A1_at	A	A1TS	POPTR_0015s00790	POPTR_0015s00790 (11)	scaffold_15:454436-455125(-) (11)	NA	Q5ZJX4	RNA-binding protein 38	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122940.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.63184.1.A1_at	A	A1TS	POPTR_0018s01550	POPTR_0018s01550 (11)	scaffold_18:1461269-1463190(+) (11)	NA	O22969	Uncharacterized protein At2g34160	AT2G34160.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.63184.1.A1_s_at	A	A2TS	POPTR_0006s26820	POPTR_0006s26820 (11)//POPTR_0018s01550 (11)	scaffold_18:1461289-1462400(+) (11)//scaffold_6:24908140-24909377(+) (11)	NA	O22969	Uncharacterized protein At2g34160	AT2G34160.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.6319.1.S1_at	A	A1TS	POPTR_0010s22230	POPTR_0010s22230 (11)	scaffold_10:19218981-19219026(-) (11)	NA	A2XFB7	Two-component response regulator-like PRR73	AT5G02810.1	pseudo-response regulator 7 	LOC_Os03g17570.3	"response regulator receiver domain containing protein, expressed"	Medtr4g079920.1	Response regulator receiver; CCT 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.6319.1.S1_s_at	A	A2TS	POPTR_0010s22230	POPTR_0010s22230 (11)//POPTR_0008s04610 (9)	scaffold_10:19216223-19218951(-) (11)//scaffold_8:2632006-2634697(+) (11)	NA	A2XFB7	Two-component response regulator-like PRR73	AT5G02810.1	pseudo-response regulator 7 	LOC_Os03g17570.3	"response regulator receiver domain containing protein, expressed"	Medtr4g079920.1	Response regulator receiver; CCT 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.63208.1.A1_at	A	A1TS	POPTR_0013s01530	POPTR_0013s01530 (11)	scaffold_13:865507-865645(-) (11)	NA	Q9ULC4	Malignant T cell-amplified sequence 1	AT1G09150.1	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein 	LOC_Os01g21180.1	"translation machinery-associated protein 20, putative, expressed"	Medtr3g123490.1	Uncharacterized domain 2 	NA	GO:0003723|RNA binding	NA
PtpAffx.6321.1.S1_a_at	A	A2TS	POPTR_0008s08340	POPTR_0010s17930 (11)//POPTR_0008s08340 (11)	scaffold_10:16356716-16357705(+) (11)//scaffold_8:5177375-5178084(-) (11)	NA	Q39769	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G16300.1	glyceraldehyde-3-phosphate dehydrogenase of plastid 2 	LOC_Os02g07490.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr2g077990.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.6321.1.S1_at	A	A1TS	POPTR_0008s08340	POPTR_0008s08340 (9)	scaffold_8:5176961-5177840(-) (9)	NA	Q39769	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G16300.1	glyceraldehyde-3-phosphate dehydrogenase of plastid 2 	LOC_Os02g07490.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr2g077990.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.6321.2.A1_at	A	A1TS	POPTR_0010s17930	POPTR_0010s17930 (11)	scaffold_10:16358053-16358486(+) (11)	NA	Q39769	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G16300.1	glyceraldehyde-3-phosphate dehydrogenase of plastid 2 	LOC_Os02g07490.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr2g077990.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.6322.1.A1_s_at	A	A1TS	POPTR_0014s01690	POPTR_0014s01690 (11)	scaffold_14:1582049-1582443(+) (11)	NA	Q37145	"Calcium-transporting ATPase 1, chloroplastic"	AT1G27770.1	autoinhibited Ca2+-ATPase 1 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.6322.2.S1_at	A	A1TS	POPTR_0014s01690	POPTR_0014s01690 (10)	scaffold_14:1577236-1577779(+) (10)	NA	Q37145	"Calcium-transporting ATPase 1, chloroplastic"	AT1G27770.1	autoinhibited Ca2+-ATPase 1 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.6322.3.A1_a_at	A	A1TS	POPTR_0014s01690	POPTR_0014s01690 (11)	scaffold_14:1576738-1576844(+) (11)	NA	Q37145	"Calcium-transporting ATPase 1, chloroplastic"	AT1G27770.1	autoinhibited Ca2+-ATPase 1 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.6322.3.A1_at	A	A1TS	POPTR_0014s01690	POPTR_0014s01690 (10)	scaffold_14:1576622-1576744(+) (10)	NA	Q37145	"Calcium-transporting ATPase 1, chloroplastic"	AT1G27770.1	autoinhibited Ca2+-ATPase 1 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.6323.2.S1_a_at	A	A1TS	POPTR_0012s02230	POPTR_0012s02230 (11)	scaffold_12:1861435-1862268(-) (11)	POPTR_0015s01540 (7)	O81223	Calcineurin B-like protein 4	AT5G24270.2	Calcium-binding EF-hand family protein 	LOC_Os02g18880.1	"calcineurin B, putative, expressed"	Medtr3g124000.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6323.2.S1_at	A	A1TS	POPTR_0012s02230	POPTR_0012s02230 (10)	scaffold_12:1861709-1862478(-) (10)	NA	O81223	Calcineurin B-like protein 4	AT5G24270.2	Calcium-binding EF-hand family protein 	LOC_Os02g18880.1	"calcineurin B, putative, expressed"	Medtr3g124000.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6328.1.S1_at	A	A1TS	POPTR_0002s16650	POPTR_0002s16650 (11)	scaffold_2:12456953-12457815(+) (11)	NA	P46518	Late embryogenesis abundant protein Lea14-A	AT2G46140.1	Late embryogenesis abundant protein 	LOC_Os01g12580.1	"late embryogenesis abundant protein, putative, expressed"	Medtr7g088940.1	Late embryogenesis abundant protein 2 	GO:0009269|response to desiccation	NA	NA
PtpAffx.63290.1.A1_at	A	A1MS	POPTR_0018s11630	POPTR_0018s11630 (11)	scaffold_18:12288792-12289291(-) (11)	NA	P59583	Probable WRKY transcription factor 32	AT4G30935.1	WRKY DNA-binding protein 32 	LOC_Os08g17400.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr8g145380.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.63303.1.A1_at	A	A1TS	POPTR_0002s10670	POPTR_0002s10670 (11)	scaffold_2:7745317-7745813(-) (11)	NA	NA	NA	AT1G09710.2	Homeodomain-like superfamily protein 	LOC_Os02g34630.1	"MYB family transcription factor, putative, expressed"	Medtr3g149540.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63320.1.A1_at	A	A1MS	POPTR_0009s08340	POPTR_0009s08340 (11)	scaffold_9:7661720-7662219(+) (11)	NA	O60094	DNA polymerase V	AT5G64420.1	DNA polymerase V family 	LOC_Os02g04270.1	"DNA polymerase V, putative, expressed"	Medtr2g010160.1	DNA polymerase V 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.63321.1.A1_at	A	A1TS	POPTR_0001s28990	POPTR_0001s28990 (11)	scaffold_1:27746963-27747412(-) (11)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.3	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.63326.1.A1_at	A	A1TS	POPTR_0012s14860	POPTR_0012s14860 (11)	scaffold_12:14579031-14579479(+) (11)	NA	Q9LFP3	Probable glycosyltransferase At5g11130	AT2G35100.1	Exostosin family protein 	LOC_Os07g37960.1	"exostosin family domain containing protein, expressed"	Medtr4g114370.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.63338.1.A1_at	A	A1TS	POPTR_0010s18905	POPTR_0010s18905 (11)	scaffold_10:17001306-17001811(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6334.1.S1_at	A	A1TS	POPTR_0009s01960	POPTR_0009s01960 (11)	scaffold_9:2477780-2478318(+) (11)	NA	NA	NA	AT3G45210.1	"Protein of unknown function, DUF584 "	LOC_Os04g43990.1	"DUF584 domain containing protein, putative, expressed"	Medtr4g081830.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63341.1.S1_a_at	A	A1TS	POPTR_0005s24660	POPTR_0005s24660 (11)	scaffold_5:23126435-23126678(+) (11)	NA	NA	NA	AT2G31140.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os04g01240.1	"serine-type peptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63346.1.A1_at	A	A1MA	POPTR_0002s11700	POPTR_0002s11700 (11)	scaffold_2:8694800-8695199(+) (11)	NA	Q9SY57	Protein PHLOEM PROTEIN 2-LIKE A10	AT1G10150.1	Carbohydrate-binding protein 	LOC_Os03g56000.1	"PHLOEM 2-LIKE A10, putative, expressed"	Medtr5g015270.1	"Protein PHLOEM PROTEIN 2-LIKE A10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63357.1.A1_a_at	A	A1TS	POPTR_0018s14400	POPTR_0018s14400 (11)	scaffold_18:14613170-14614011(-) (11)	NA	B4SA76	tRNA pseudouridine synthase A	AT5G35400.1	Pseudouridine synthase family protein 	LOC_Os06g45250.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr4g161180.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.63358.2.S1_a_at	A	A1TS	POPTR_0006s24330	POPTR_0006s24330 (11)	scaffold_6:22963585-22963893(-) (11)	NA	P41152	Heat shock factor protein HSF30	AT2G26150.1	heat shock transcription factor A2 	LOC_Os07g08140.1	"heat stress transcription factor, putative, expressed"	Medtr3g139780.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.63392.1.A1_at	A	A1TS	POPTR_0014s13620	POPTR_0014s13620 (11)	scaffold_14:9999279-9999690(+) (11)	NA	Q3EBD3	DEAD-box ATP-dependent RNA helicase 41	AT3G02065.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g10770.2	"DEAD-box ATP-dependent RNA helicase 41, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.63395.1.A1_s_at	A	A1TS	POPTR_0004s22740	POPTR_0004s22740 (11)	scaffold_4:21607360-21609404(+) (11)	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.1	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63404.1.A1_at	A	A1TS	POPTR_0001s44620	POPTR_0001s44620 (10)	scaffold_1:45083140-45083908(-) (10)	NA	O50046	"Tryptophan synthase beta chain 2, chloroplastic"	AT4G27070.1	tryptophan synthase beta-subunit 2 	LOC_Os08g04180.1	"tryptophan synthase beta chain 1, putative, expressed"	Medtr3g064270.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.63409.1.A1_at	A	A1TS	POPTR_0006s23800	POPTR_0006s23800 (11)	scaffold_6:22530688-22530890(+) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os02g01380.1	expressed protein	Medtr1g125280.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63411.1.S1_at	A	A1TS	POPTR_0018s00550	POPTR_0018s00550 (11)	scaffold_18:479601-479903(+) (11)	NA	Q5ZL00	Uncharacterized protein KIAA0090 homolog	AT5G11560.1	catalytics 	LOC_Os05g14170.1	expressed protein	AC225517_26.1	Quinonprotein alcohol dehydrogenase-like AC225517.6 112314-118182 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63414.1.A1_at	A	A1TS	POPTR_0015s04700	POPTR_0015s04700 (9)	scaffold_15:4925935-4926418(-) (9)	NA	P93008	DEAD-box ATP-dependent RNA helicase 21	AT2G33730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g50090.4	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	AC233669_14.1	"Helicase, C-terminal; ; AC233669.2 54226-56692 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.63421.1.A1_at	A	A1TS	POPTR_0002s18460	POPTR_0002s18460 (11)	scaffold_2:14372792-14373063(+) (11)	NA	Q8W4F1	"Probable plastid-lipid-associated protein 10, chloroplastic"	AT2G46910.1	Plastid-lipid associated protein PAP / fibrillin family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63422.1.S1_at	A	A1TS	POPTR_0006s01060	POPTR_0006s01060 (11)	scaffold_6:603029-603510(+) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT2G32300.1	uclacyanin 1 	LOC_Os02g48820.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr2g029640.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.63422.2.S1_a_at	A	A1TS	POPTR_0006s01060	POPTR_0006s01060 (11)	scaffold_6:602068-602120(+) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT2G32300.1	uclacyanin 1 	LOC_Os02g48820.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr2g029640.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.63422.2.S1_at	A	A1MS	POPTR_0006s01060	POPTR_0006s01060 (11)	scaffold_6:602155-602409(+) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT2G32300.1	uclacyanin 1 	LOC_Os02g48820.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr2g029640.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.63431.1.S1_at	A	A1MS	POPTR_0005s14120	POPTR_0005s14120 (11)	scaffold_5:11193979-11194763(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G37180.1	Homeodomain-like superfamily protein 	LOC_Os03g55590.1	"MYB family transcription factor, putative, expressed"	Medtr4g129010.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6344.1.S1_at	A	A1MA	POPTR_0016s11621	POPTR_0016s11621 (10)	scaffold_16:10844213-10844766(-) (10)	NA	P25851	"Fructose-1,6-bisphosphatase, chloroplastic"	AT3G54050.2	high cyclic electron flow 1 	LOC_Os03g16050.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.63487.1.A1_a_at	A	A1TS	POPTR_0011s02680	POPTR_0011s02680 (11)	scaffold_11:2609633-2611751(+) (11)	NA	Q5ZIH9	Uncharacterized protein C3orf19 homolog	AT4G18260.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os01g47620.1	expressed protein	Medtr4g165850.1	"Uncharacterized protein C3orf19 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63487.1.A1_at	A	A1MS	POPTR_0011s02680	POPTR_0011s02680 (10)	scaffold_11:2609475-2611944(+) (10)	NA	Q5ZIH9	Uncharacterized protein C3orf19 homolog	AT4G18260.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os01g47620.1	expressed protein	Medtr4g165850.1	"Uncharacterized protein C3orf19 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63487.2.A1_at	A	A1TS	POPTR_0011s02680	POPTR_0011s02680 (11)	scaffold_11:2609577-2612260(+) (11)	NA	Q5ZIH9	Uncharacterized protein C3orf19 homolog	AT4G18260.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os01g47620.1	expressed protein	Medtr4g165850.1	"Uncharacterized protein C3orf19 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63488.1.S1_at	A	A1TS	POPTR_0005s18490	POPTR_0005s18490 (11)	scaffold_5:16729097-16729281(-) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.63488.3.A1_at	A	A1TS	POPTR_0007s10670	POPTR_0007s10670 (9)	scaffold_7:10722887-10723155(+) (9)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.63488.4.A1_a_at	A	A1MA	POPTR_0005s18490	POPTR_0005s18490 (11)	scaffold_5:16729337-16729606(+) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.63501.1.A1_a_at	A	A1TS	POPTR_0001s09190	POPTR_0001s09190 (11)	scaffold_1:7033449-7033982(-) (11)	NA	Q54HH2	Probable serine racemase	AT4G11640.1	serine racemase 	LOC_Os04g46930.2	"serine racemase, putative, expressed"	Medtr4g149590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.63505.1.S1_s_at	A	A1TS	POPTR_0013s11060	POPTR_0013s11060 (11)	scaffold_13:11724257-11724533(+) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63510.1.A1_at	A	A1TS	POPTR_0019s15200	POPTR_0019s15200 (11)	scaffold_19:15766012-15766317(-) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT5G41700.5	ubiquitin conjugating enzyme 8 	LOC_Os06g30970.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.63514.1.A1_at	A	A1TS	POPTR_0014s05150	POPTR_0014s05150 (11)	scaffold_14:3914281-3914912(-) (11)	NA	Q76E23	Eukaryotic translation initiation factor 4G	AT3G60240.2	eukaryotic translation initiation factor 4G 	LOC_Os07g36940.2	"eukaryotic translation initiation factor 4G, putative, expressed"	Medtr8g008440.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.6352.1.A1_s_at	A	A1TS	POPTR_0003s05050	POPTR_0003s05050 (11)	scaffold_3:6230897-6231413(-) (11)	NA	P45406	Cytochrome c-type biogenesis protein CcmH	AT1G15220.2	cytochrome c biogenesis protein family 	LOC_Os02g17520.1	"cytochrome c-type biogenesis protein ccmH precursor, putative, expressed"	Medtr5g011300.1	Cytochrome C biogenesis protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6353.1.S1_at	A	A1TS	POPTR_0003s13450	POPTR_0003s13450 (11)	scaffold_3:13830979-13831431(-) (11)	NA	P13240	Disease resistance response protein 206	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44250.1	"dirigent, putative, expressed"	AC234702_19.1	Plant disease resistance response protein AC234702.1 101247-102011 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63535.1.A1_s_at	A	A1TS	POPTR_0006s24650	POPTR_0006s24650 (11)	scaffold_6:23231243-23231281(+) (11)	NA	B5X0N6	K(+) efflux antiporter 6	AT5G11800.1	K+ efflux antiporter 6 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr4g160810.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.63543.1.A1_at	A	A1TS	POPTR_0006s20130	POPTR_0006s20130 (11)	scaffold_6:19195237-19195757(+) (11)	NA	Q9SKZ2	Probable CCR4-associated factor 1 homolog 7	AT2G32070.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr4g022250.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.63548.1.A1_at	A	A1TS	POPTR_0017s04330	POPTR_0017s04330 (11)	scaffold_17:3345901-3347073(-) (11)	NA	Q93ZR6	O-acyltransferase WSD1	AT3G49190.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os01g48874.1	"wax synthase, putative, expressed"	Medtr7g009360.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63559.1.A1_at	A	A1TS	POPTR_0031s00430	POPTR_0031s00430 (11)	scaffold_31:262936-263195(+) (11)	NA	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.63592.2.A1_a_at	A	A1TS	POPTR_0010s15840	POPTR_0010s15840 (11)	scaffold_10:14950667-14951111(+) (11)	NA	Q96PB1	CAS1 domain-containing protein 1	AT3G06550.3	O-acetyltransferase family protein 	LOC_Os03g19970.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63611.1.A1_at	A	A1TS	POPTR_0014s17410	POPTR_0014s17410 (11)	scaffold_14:13545519-13547529(+) (11)	NA	P53750	Uncharacterized hydrolase YNR064C	AT4G12830.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g69060.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr4g005710.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63612.1.A1_at	A	A1TS	POPTR_0014s06550	POPTR_0014s06550 (10)	scaffold_14:4975445-4975480(-) (10)	NA	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os08g02490.1	"AT hook motif domain containing protein, expressed"	Medtr8g106590.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63615.1.S1_at	A	A1TS	POPTR_0006s28370	POPTR_0006s28370 (11)	scaffold_6:26070236-26070732(-) (11)	NA	NA	NA	AT5G57685.1	glutamine dumper 3 	LOC_Os08g34700.1	"GDU1, putative, expressed"	Medtr3g138690.1	GDU1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63624.1.A1_at	A	A1TS	POPTR_0012s04550	POPTR_0012s04550 (11)	scaffold_12:3842303-3842527(+) (11)	NA	Q9LE22	Probable calcium-binding protein CML27	AT1G18210.2	Calcium-binding EF-hand family protein 	LOC_Os05g13580.1	"OsCML18 - Calmodulin-related calcium sensor protein, expressed"	Medtr4g155110.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63626.1.S1_at	A	A1TS	POPTR_0014s14170	POPTR_0014s14170 (11)	scaffold_14:10371861-10372768(+) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT3G26700.1	Protein kinase superfamily protein 	LOC_Os01g70410.3	"protein kinase, putative, expressed"	Medtr7g097290.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.63638.1.A1_at	A	A1TS	POPTR_0018s08240	POPTR_0018s08240 (11)	scaffold_18:9104944-9105295(-) (11)	NA	NA	NA	AT1G52140.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g36070.1	expressed protein	Medtr8g015610.1	"Avr9/Cf-9 rapidly elicited protein 146, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63654.1.S1_at	A	A1TS	POPTR_0007s05470	POPTR_0007s05470 (10)	scaffold_7:3553800-3554790(-) (10)	NA	A8KBE0	Oxidation resistance protein 1	AT4G39870.2	TLD-domain containing nucleolar protein 	LOC_Os06g11790.1	"TLD family protein, putative, expressed"	Medtr3g101690.2	TLDc 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63672.1.A1_at	A	A1TS	POPTR_0005s25100	POPTR_0005s25100 (11)	scaffold_5:23436657-23436945(-) (11)	NA	Q43814	"Ornithine carbamoyltransferase, chloroplastic"	AT1G75330.1	ornithine carbamoyltransferase 	LOC_Os02g47590.1	"ornithine carbamoyltransferase, putative, expressed"	Medtr5g101000.1	Aspartate carbamoyltransferase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016743|carboxyl- or carbamoyltransferase activity	NA
PtpAffx.63679.1.A1_s_at	A	A1TS	POPTR_0005s20380	POPTR_0005s20380 (11)	scaffold_5:19430306-19430353(+) (11)	NA	Q9C6Y3	Cyclin-A1-1	AT1G44110.1	Cyclin A1;1 	LOC_Os01g13260.1	"cyclin-A1, putative, expressed"	Medtr4g144920.1	Cyclin-like; ; 	NA	NA	GO:0005634|nucleus
PtpAffx.6368.1.S1_at	A	A1TS	POPTR_0010s20770	POPTR_0010s20770 (11)	scaffold_10:18229381-18231180(-) (11)	NA	O22160	"Thylakoid lumenal 15 kDa protein 1, chloroplastic"	AT2G44920.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g05080.1	"thylakoid lumenal protein, putative, expressed"	Medtr5g012270.1	Pentapeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63690.1.S1_at	A	A1TS	POPTR_0005s17780	POPTR_0005s17780 (11)	scaffold_5:15528514-15529286(+) (11)	NA	NA	NA	AT4G24580.1	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr3g149080.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.63692.1.A1_at	A	A1TS	POPTR_0006s13330	POPTR_0006s13330 (11)	scaffold_6:10547571-10548016(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63695.1.A1_at	A	A1TS	POPTR_0001s22540	POPTR_0001s22540 (11)	scaffold_1:21439996-21440248(-) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT1G66150.1	transmembrane kinase 1 	LOC_Os04g58910.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr2g105170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.63698.1.A1_at	A	A1TS	POPTR_0013s13070	POPTR_0013s13070 (10)	scaffold_13:13632286-13632509(-) (10)	NA	Q9FGS8	C2 and GRAM domain-containing protein At5g50170	AT3G59660.1	C2 domain-containing protein / GRAM domain-containing protein 	LOC_Os09g34130.1	"GRAM domain containing protein, expressed"	Medtr4g128530.1	C2; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.637.1.S1_at	A	A1TS	POPTR_0018s06940	POPTR_0018s06940 (11)	scaffold_18:7041688-7042658(-) (11)	NA	Q9SU94	Probable protein arginine N-methyltransferase 1.1	AT4G29510.1	arginine methyltransferase 11 	LOC_Os09g19560.1	"methyltransferase, putative, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.63706.1.A1_at	A	A1TS	POPTR_0008s17820	POPTR_0008s17820 (11)	scaffold_8:11971467-11971843(+) (11)	NA	NA	NA	AT1G67570.1	Protein of unknown function (DUF3537) 	LOC_Os08g03430.2	"extracellular ligand-gated ion channel, putative, expressed"	Medtr2g029220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63706.2.A1_a_at	A	A1TS	POPTR_0008s17820	POPTR_0008s17820 (11)	scaffold_8:11970143-11970397(+) (11)	NA	NA	NA	AT1G67570.1	Protein of unknown function (DUF3537) 	LOC_Os08g03430.2	"extracellular ligand-gated ion channel, putative, expressed"	Medtr2g029220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63706.2.A1_at	A	A1MS	POPTR_0008s17820	POPTR_0008s17820 (10)	scaffold_8:11970107-11971265(+) (10)	NA	NA	NA	AT1G67570.1	Protein of unknown function (DUF3537) 	LOC_Os08g03430.2	"extracellular ligand-gated ion channel, putative, expressed"	Medtr2g029220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63715.1.S1_at	A	A1TS	POPTR_0001s29590	POPTR_0001s29590 (11)	scaffold_1:28213133-28213640(-) (11)	NA	NA	NA	AT1G10020.1	Protein of unknown function (DUF1005) 	LOC_Os07g04150.1	"stress-induced protein, putative, expressed"	Medtr5g005600.1	Protein of unknown function DUF1005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6372.1.S1_s_at	A	A1TS	POPTR_0004s15440	POPTR_0004s15440 (11)	scaffold_4:16070388-16070649(+) (11)	NA	NA	NA	AT2G26500.1	"cytochrome b6f complex subunit (petM), putative "	LOC_Os03g55720.2	"cytochrome b6f complex subunit, putative, expressed"	NA	NA	NA	NA	GO:0009512|cytochrome b6f complex
PtpAffx.63727.1.A1_at	A	A1TS	POPTR_0002s00290	POPTR_0002s00290 (10)	scaffold_2:52450-52993(-) (10)	NA	NA	NA	AT1G43040.1	SAUR-like auxin-responsive protein family  	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63748.1.A1_at	A	A1TS	POPTR_0005s15700	POPTR_0005s15700 (11)	scaffold_5:12297309-12297792(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63751.1.A1_at	A	A1TS	POPTR_0002s06340	POPTR_0002s06340 (11)	scaffold_2:4228866-4229462(+) (11)	NA	O64380	Polyadenylate-binding protein 3	AT1G22760.1	poly(A) binding protein 3 	LOC_Os08g22354.2	"polyadenylate-binding protein, putative, expressed"	AC233576_3.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 AC233576.2 6823-10801 H EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.63756.1.A1_s_at	A	A1TS	POPTR_0016s13500	POPTR_0016s13500 (11)	scaffold_16:12682887-12683166(-) (11)	NA	NA	NA	AT3G51660.1	Tautomerase/MIF superfamily protein 	LOC_Os11g01600.1	"macrophage migration inhibitory factor, putative, expressed"	Medtr7g076390.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63756.2.S1_at	A	A1TS	POPTR_0016s13510	POPTR_0016s13510 (11)	scaffold_16:12685393-12685939(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63762.1.A1_at	A	A1TS	POPTR_0011s14850	POPTR_0011s14850 (10)	scaffold_11:17098614-17098849(-) (10)	NA	NA	NA	AT2G17410.2	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.6377.2.S1_s_at	A	A3TS	POPTR_0002s22560	POPTR_0014s13560 (11)//POPTR_0002s22560 (11)//POPTR_0002s22580 (11)	scaffold_14:9971930-9972092(+) (11)//scaffold_2:19330798-19330960(+) (11)//scaffold_2:19351407-19351575(+) (11)	NA	O80860	"ATP-dependent zinc metalloprotease FTSH 2, chloroplastic"	AT2G30950.1	FtsH extracellular protease family 	LOC_Os06g45820.1	"OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.63775.1.A1_s_at	A	A1TS	POPTR_0004s16020	POPTR_0004s16020 (11)	scaffold_4:16488649-16489353(+) (11)	NA	NA	NA	AT1G11755.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os03g10080.1	expressed protein	Medtr5g007400.1	Di-trans-poly-cis-decaprenylcistransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63777.1.A1_a_at	A	A1TS	POPTR_0001s25200	POPTR_0001s25200 (11)	scaffold_1:24396241-24396716(+) (11)	NA	Q9LNW3	Protein phosphatase 2C 3	AT1G07430.1	highly ABA-induced PP2C gene 2 	LOC_Os05g38290.2	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63786.1.A1_at	A	A1TS	POPTR_0008s00490	POPTR_0008s00490 (11)	scaffold_8:196828-198170(-) (11)	NA	Q9LJX4	Pumilio homolog 5	AT3G20250.1	pumilio 5 	LOC_Os08g40830.3	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.63788.1.S1_at	A	A1TS	POPTR_0005s26310	POPTR_0005s26310 (11)	scaffold_5:24383417-24383507(-) (11)	NA	Q5RAG2	Extended synaptotagmin-1	AT1G20080.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g25060.1	"NTMC2Type1.2 protein, putative, expressed"	Medtr1g031480.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63788.1.S1_s_at	A	A1TS	POPTR_0005s26310	POPTR_0005s26310 (11)	scaffold_5:24383620-24384330(-) (11)	NA	Q5RAG2	Extended synaptotagmin-1	AT1G20080.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g25060.1	"NTMC2Type1.2 protein, putative, expressed"	Medtr1g031480.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63792.1.A1_at	A	A1TS	POPTR_0011s07160	POPTR_0011s07160 (10)	scaffold_11:7924608-7924868(+) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G29200.2	O-fucosyltransferase family protein 	LOC_Os06g35410.1	"growth regulator related protein, putative, expressed"	Medtr8g147250.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63792.1.A1_s_at	A	A1TS	POPTR_0011s07160	POPTR_0011s07160 (11)	scaffold_11:7924347-7924715(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G29200.2	O-fucosyltransferase family protein 	LOC_Os06g35410.1	"growth regulator related protein, putative, expressed"	Medtr8g147250.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.638.1.S1_at	A	A1TS	POPTR_0010s05530	POPTR_0010s05530 (11)	scaffold_10:6977345-6978642(+) (11)	NA	Q54MJ7	"Probable alanine aminotransferase, mitochondrial"	AT1G70580.4	alanine-2-oxoglutarate aminotransferase 2 	LOC_Os07g01760.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g034580.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.638.1.S1_s_at	A	A2TS	POPTR_0008s19160	POPTR_0010s05530 (11)//POPTR_0008s19160 (11)	scaffold_10:6977633-6978550(+) (11)//scaffold_8:13127769-13128662(-) (11)	NA	P52894	Alanine aminotransferase 2	AT1G70580.4	alanine-2-oxoglutarate aminotransferase 2 	LOC_Os07g01760.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g034580.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.638.2.A1_a_at	A	A2TS	POPTR_0008s19160	POPTR_0010s05530 (11)//POPTR_0008s19160 (11)	scaffold_10:6973625-6975548(+) (11)//scaffold_8:13130457-13132299(-) (11)	NA	P52894	Alanine aminotransferase 2	AT1G70580.4	alanine-2-oxoglutarate aminotransferase 2 	LOC_Os07g01760.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g034580.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.63808.1.A1_at	A	A1TS	POPTR_0001s14010	POPTR_0001s14010 (11)	scaffold_1:11040115-11040703(+) (11)	NA	Q9FJD5	Laccase-17	AT5G60020.1	laccase 17 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g067600.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.6381.1.S1_at	A	A1TS	POPTR_0002s15190	POPTR_0002s15190 (9)	scaffold_2:11354310-11354851(+) (11)	NA	Q7ZWU7	Extended synaptotagmin-2-B	AT3G61050.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os07g22640.1	"lipid binding protein, putative, expressed"	Medtr7g083350.1	C2; Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63818.1.A1_at	A	A1TS	POPTR_0004s23210	POPTR_0004s23210 (10)	scaffold_4:21993390-21993748(-) (10)	NA	Q6RHR6	Ion channel DMI1	AT5G49960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g64980.2	"ion channel DMI1, chloroplast precursor, putative, expressed"	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63827.1.S1_at	A	A1TS	POPTR_0013s13050	POPTR_0013s13050 (11)	scaffold_13:13619701-13620443(+) (11)	NA	Q9LT67	Transcription factor bHLH113	AT1G05710.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr4g128550.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63827.2.A1_at	A	A1MA	POPTR_0013s13050	POPTR_0013s13050 (11)	scaffold_13:13619895-13620442(-) (11)	NA	Q9LT67	Transcription factor bHLH113	AT1G05710.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr4g128550.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6384.1.A1_s_at	A	A1TS	POPTR_0013s03170	POPTR_0013s03170 (11)	scaffold_13:1934554-1936979(+) (11)	NA	NA	NA	AT3G05010.1	"Protein of unknown function, transmembrane-40 "	LOC_Os03g54920.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63840.1.A1_s_at	A	A1TS	POPTR_0005s08100	POPTR_0005s08100 (11)	scaffold_5:5571638-5572118(-) (11)	NA	Q9SIE1	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase	AT2G22250.3	aspartate aminotransferase 	LOC_Os01g65090.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g140320.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.6389.1.A1_at	A	A1TS	POPTR_0006s19670	POPTR_0006s19670 (11)	scaffold_6:18696203-18696702(-) (11)	NA	NA	NA	AT4G30630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57910.1); Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g16930.1	expressed protein	Medtr8g145180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6390.1.S1_at	A	A1TS	POPTR_0013s05950	POPTR_0013s05950 (11)	scaffold_13:4323434-4323873(+) (11)	NA	P56960	Exosome component 10	AT5G35910.1	"Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain "	LOC_Os10g30100.1	"3-5 exonuclease family protein, putative, expressed"	Medtr7g103140.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003676|nucleic acid binding||GO:0008408|3'-5' exonuclease activity	GO:0000176|nuclear exosome (RNase complex)
PtpAffx.63908.1.S1_at	A	A1TS	POPTR_0003s07800	POPTR_0003s07800 (10)	scaffold_3:9329920-9330812(-) (10)	NA	Q9SKK8	RING-H2 finger protein ATL22	AT2G25410.1	RING/U-box superfamily protein 	NA	NA	Medtr5g013140.1	protein binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63920.1.S1_at	A	A1TS	POPTR_0018s02740	POPTR_0018s02740 (11)	scaffold_18:2445838-2446089(+) (11)	NA	Q5R7X2	U2-associated protein SR140	AT5G25060.1	RNA recognition motif (RRM)-containing protein 	LOC_Os02g08360.1	"RNA recognition motif, putative, expressed"	Medtr8g083970.1	"SWAP/Surp; DNA-binding SAP; Regulation of nuclear pre-mRNA protein; ENTH/VHS; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.63923.1.S1_at	A	A1TS	POPTR_0010s06890	POPTR_0010s06890 (11)	scaffold_10:8135719-8136616(+) (11)	NA	Q80UM7	Mannosyl-oligosaccharide glucosidase	AT1G67490.1	glucosidase 1 	LOC_Os01g69210.1	"mannosyl-oligosaccharide glucosidase, putative, expressed"	AC233656_18.1	"Glycoside hydrolase, family 63 AC233656.1 66442-60977 H EGN_Mt090430 200"	GO:0009311|oligosaccharide metabolic process	GO:0004573|mannosyl-oligosaccharide glucosidase activity	NA
PtpAffx.63940.1.S1_s_at	A	A1TS	POPTR_0018s10920	POPTR_0018s10920 (11)	scaffold_18:11762180-11762410(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63950.1.S1_at	A	A1TS	POPTR_0004s23980	POPTR_0004s23980 (11)	scaffold_4:22620971-22624022(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G02400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g74660.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr2g034190.1	NAD-dependent epimerase/dehydratase; Lipocalin 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.63964.1.S1_at	A	A1TS	POPTR_0016s03800	POPTR_0016s03800 (11)	scaffold_16:2130417-2132512(-) (11)	NA	Q9N5K2	"DNA-directed RNA polymerases I, II, and III subunit RPABC1"	AT3G57080.1	Eukaryotic rpb5 RNA polymerase subunit family protein 	LOC_Os12g04510.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed"	Medtr7g107270.1	"RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.63988.2.S1_s_at	A	A3TS	POPTR_0004s03510	POPTR_0011s04310 (11)//POPTR_0004s03510 (11)//POPTR_0011s04300 (11)	scaffold_11:4314217-4314292(-) (11)//scaffold_11:4318927-4319002(-) (11)//scaffold_4:2426026-2430216(-) (11)	POPTR_0004s03500 (7)	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g35470.1	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.640.1.S1_at	A	A1TS	POPTR_0001s04170	POPTR_0001s04170 (11)	scaffold_1:3300963-3301364(-) (11)	NA	P0C582	Putative mitochondrial 2-oxoglutarate/malate carrier protein	AT5G19760.1	Mitochondrial substrate carrier family protein 	LOC_Os05g11780.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g134510.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64000.1.S1_at	A	A1TS	POPTR_0008s14030	POPTR_0008s14030 (11)	scaffold_8:9266681-9268938(+) (11)	NA	Q9LKW9	Sodium/hydrogen exchanger 7	AT2G01980.1	"sodium proton exchanger, putative (NHX7) (SOS1) "	LOC_Os12g44360.2	"sodium/hydrogen exchanger 7, putative, expressed"	Medtr2g043140.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.64000.1.S1_s_at	A	A1TS	POPTR_0008s14030	POPTR_0008s14030 (10)	scaffold_8:9268419-9268533(+) (10)	NA	Q9LKW9	Sodium/hydrogen exchanger 7	AT2G01980.1	"sodium proton exchanger, putative (NHX7) (SOS1) "	LOC_Os12g44360.2	"sodium/hydrogen exchanger 7, putative, expressed"	Medtr2g043140.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.64062.1.S1_a_at	A	A1TS	POPTR_0008s16920	POPTR_0008s16920 (11)	scaffold_8:11372038-11372220(+) (11)//scaffold_8:12767065-12767247(+) (11)	POPTR_0008s18750 (6)	B5WWZ8	Long-chain-alcohol oxidase FAO1	AT3G23410.1	fatty alcohol oxidase 3 	LOC_Os02g40840.1	"alcohol oxidase, putative, expressed"	Medtr1g090220.1	Glucose-methanol-choline oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.64062.2.A1_at	A	A1TS	POPTR_0008s16920	POPTR_0008s16920 (9)	scaffold_8:11371601-11372189(+) (9)//scaffold_8:12766628-12767216(+) (9)	POPTR_0008s18750 (7)	B5WWZ8	Long-chain-alcohol oxidase FAO1	AT3G23410.1	fatty alcohol oxidase 3 	LOC_Os02g40840.1	"alcohol oxidase, putative, expressed"	Medtr1g090220.1	Glucose-methanol-choline oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.6407.1.A1_a_at	A	A1TS	POPTR_0022s00770	POPTR_0022s00770 (10)	scaffold_19:3861353-3861588(-) (11)//scaffold_22:385543-385771(+) (10)	NA	Q93W20	"NifU-like protein 2, chloroplastic"	AT5G49940.1	NIFU-like protein 2 	LOC_Os11g07916.1	"nifU, putative, expressed"	Medtr2g005660.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.6407.1.A1_at	A	A1TS	POPTR_0022s00770	POPTR_0022s00770 (10)	scaffold_22:383461-385692(+) (10)	NA	Q93W20	"NifU-like protein 2, chloroplastic"	AT5G49940.1	NIFU-like protein 2 	LOC_Os11g07916.1	"nifU, putative, expressed"	Medtr2g005660.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.64085.1.S1_at	A	A1TS	POPTR_0011s05590	POPTR_0011s05590 (10)	scaffold_11:5580435-5580981(+) (10)	NA	NA	NA	AT1G28380.1	MAC/Perforin domain-containing protein 	LOC_Os07g07194.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr2g005520.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64085.1.S1_s_at	A	A2TS	POPTR_0004s04730	POPTR_0004s04730 (11)//POPTR_0011s05590 (10)	scaffold_11:5580526-5580867(+) (10)//scaffold_4:3493701-3494039(+) (11)	NA	NA	NA	AT1G28380.1	MAC/Perforin domain-containing protein 	LOC_Os05g48360.2	"membrane attack complex component/perforin/complement C9, putative, expressed"	Medtr2g005520.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6409.1.S1_at	A	A1TS	POPTR_0007s02960	POPTR_0007s02960 (10)	scaffold_7:1735212-1736157(+) (10)	NA	Q8S944	Dynamin-related protein 3A	AT4G33650.1	dynamin-related protein 3A 	LOC_Os01g69130.1	"dynamin family protein, putative, expressed"	Medtr2g009740.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.64102.1.S1_s_at	A	A1TS	POPTR_0001s10040	POPTR_0001s10040 (11)	scaffold_1:7768625-7769832(+) (11)	NA	Q9SH59	Reticulon-like protein B3	AT1G64090.1	Reticulan like protein B3 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.64108.1.S1_at	A	A1TS	POPTR_0018s02320	POPTR_0018s02320 (9)	scaffold_18:2068773-2068972(-) (11)	NA	Q42485	Zinc finger protein 1	AT5G10970.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr3g138050.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.64147.1.A1_s_at	A	A2TS	POPTR_0001s09600	POPTR_0001s09600 (11)//POPTR_0743s00210 (9)	scaffold_1:7311565-7312751(-) (11)//scaffold_743:8156-9344(+) (9)	POPTR_0003s12960 (6)	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.64184.1.S1_at	A	A1TS	POPTR_0018s05370	POPTR_0018s05370 (11)	scaffold_18:4918414-4918659(+) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.64238.1.S1_s_at	A	A1TS	POPTR_0006s23850	POPTR_0006s23850 (11)	scaffold_6:22586758-22587361(-) (11)	NA	NA	NA	AT5G21430.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g31460.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g139340.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.64327.1.S1_s_at	A	A1TS	POPTR_0013s09260	POPTR_0013s09260 (11)	scaffold_13:8907483-8907754(-) (11)	NA	Q87JZ5	UPF0189 protein VPA0103	AT2G40600.1	appr-1-p processing enzyme family protein 	LOC_Os03g21830.1	"appr-1-p processing enzyme family protein, putative, expressed"	Medtr1g008730.1	Appr-1-p processing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64358.1.S1_at	A	A1TS	POPTR_0004s03720	POPTR_0004s03720 (11)	scaffold_4:2591565-2592493(-) (11)	NA	Q6R2K3	Protein STRUBBELIG-RECEPTOR FAMILY 3	AT4G03390.1	STRUBBELIG-receptor family 3 	LOC_Os07g37810.1	"STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed"	Medtr2g014380.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.64361.1.S1_s_at	A	A1TS	POPTR_0007s14500	POPTR_0007s14500 (11)	scaffold_7:14268258-14268678(+) (11)	NA	Q9SYQ8	Receptor protein kinase CLAVATA1	AT5G65700.2	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g56270.2	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr5g014870.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.64399.1.S1_at	A	A1TS	POPTR_0018s06390	POPTR_0018s06390 (9)	scaffold_18:6211288-6217956(-) (11)	NA	NA	NA	AT2G26900.1	Sodium Bile acid symporter family 	LOC_Os01g45750.1	"bile acid sodium symporter family protein, putative, expressed"	Medtr8g118790.2	Bile acid:sodium symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.644.1.A1_at	A	A1TS	POPTR_0009s07310	POPTR_0009s07310 (10)	scaffold_9:6851238-6853083(-) (10)	NA	NA	NA	AT5G12240.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages. 	LOC_Os07g44744.1	expressed protein	Medtr5g096100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.644.2.A1_at	A	A1MS	POPTR_0009s07310	POPTR_0009s07310 (11)	scaffold_9:6851837-6852376(-) (11)	NA	NA	NA	AT5G12240.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages. 	LOC_Os07g44744.1	expressed protein	Medtr5g096100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64406.1.S1_at	A	A1TS	POPTR_0001s36910	POPTR_0001s36910 (11)	scaffold_1:35690830-35691822(-) (11)	NA	NA	NA	AT1G30320.1	Remorin family protein 	LOC_Os04g52920.1	"remorin family protein, putative, expressed"	Medtr1g024260.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64440.1.S1_at	A	A1TS	POPTR_0013s02800	POPTR_0013s02800 (11)	scaffold_13:1688179-1688717(-) (11)	NA	P93149	Licodione synthase	AT5G06900.1	"cytochrome P450, family 93, subfamily D, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g018110.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.64449.1.S1_at	A	A1TS	POPTR_0007s12560	POPTR_0007s12560 (11)	scaffold_7:12849595-12849905(+) (11)	NA	Q9M065	"Pentatricopeptide repeat-containing protein At4g36680, mitochondrial"	AT4G36680.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g42210.1	"membrane-associated salt-inducible protein like, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6449.1.A1_at	A	A1MS	POPTR_0004s06740	POPTR_0004s06740 (11)	scaffold_4:5397998-5398216(+) (11)//scaffold_4:5408053-5408272(+) (11)	POPTR_0004s06760 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6449.1.A1_s_at	A	A1TS	POPTR_0004s06740	POPTR_0004s06740 (11)	scaffold_4:5397810-5398255(+) (11)//scaffold_4:5407853-5408311(+) (11)	POPTR_0004s06760 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64492.1.A1_at	A	A1TS	POPTR_0007s10960	POPTR_0007s10960 (9)	scaffold_7:11180983-11181429(+) (11)	NA	P61872	Lipase	AT5G67050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr5g017200.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.64505.1.S1_a_at	A	A1TS	POPTR_0005s20690	POPTR_0005s20690 (11)	scaffold_5:19814234-19815027(+) (11)	POPTR_0002s07630 (6)	NA	NA	AT1G44000.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11911.1); Has 216 Blast hits to 212 proteins in 76 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.1	"senescence-inducible chloroplast stay-green protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64505.2.S1_at	A	A1TS	POPTR_0005s20690	POPTR_0005s20690 (11)	scaffold_5:19814561-19814991(+) (11)	NA	NA	NA	AT1G44000.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11911.1); Has 216 Blast hits to 212 proteins in 76 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.1	"senescence-inducible chloroplast stay-green protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6452.1.S1_at	A	A1TS	POPTR_0002s22050	POPTR_0002s22050 (11)	scaffold_2:18736597-18736988(-) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.3	"OsFBX331 - F-box domain containing protein, expressed"	Medtr3g008640.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6453.1.A1_at	A	A1TS	POPTR_0018s02400	POPTR_0018s02400 (10)	scaffold_18:2153231-2154163(+) (10)	NA	P93338	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	AT2G24270.3	aldehyde dehydrogenase 11A3 	LOC_Os08g34210.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g145740.1	"NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.64556.1.A1_at	A	A1TS	POPTR_0011s04390	POPTR_0011s04390 (11)	scaffold_11:4384431-4385865(-) (11)	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.64568.2.S1_a_at	A	A1TS	POPTR_0001s46760	POPTR_0001s46760 (9)	scaffold_1:47160678-47161081(+) (9)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35700.1	"reticuline oxidase-like protein precursor, putative, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.6457.1.A1_s_at	A	A1TS	POPTR_0005s02690	POPTR_0005s02690 (11)	scaffold_5:1713214-1713526(-) (11)	NA	NA	NA	AT5G27650.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g05660.1	"PWWP domain containing protein, expressed"	Medtr7g138980.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64585.1.A1_at	A	A1TS	POPTR_0010s18800	POPTR_0010s18800 (11)	scaffold_10:16933891-16934399(+) (11)	NA	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.64603.1.S1_at	A	A2TS	POPTR_1540s00210	POPTR_1540s00210 (11)//POPTR_0012s01160 (9)	scaffold_12:801950-802401(-) (9)//scaffold_1540:565-4273(-) (11)	NA	P29024	Acidic endochitinase	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr1g125760.1	"Glycoside hydrolase, chitinase active site "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.64612.1.S1_at	A	A2TS	POPTR_0011s10120	POPTR_0011s10120 (9)//POPTR_0011s10150 (9)	scaffold_11:12626968-12627041(+) (9)//scaffold_11:12656637-12656710(+) (9)	POPTR_0011s10300 (8)	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43774.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.64612.1.S1_s_at	A	A6TS	POPTR_0011s10120	POPTR_0011s10260 (11)//POPTR_0011s10300 (11)//POPTR_0011s10220 (11)//POPTR_0011s10120 (11)//POPTR_0011s10180 (11)//POPTR_0011s10150 (11)	scaffold_11:12627049-12627665(+) (11)//scaffold_11:12656718-12657334(+) (11)//scaffold_11:12673248-12673864(+) (11)//scaffold_11:12685172-12685788(+) (11)//scaffold_11:12720435-12721051(+) (11)//scaffold_11:12741253-12741869(+) (11)	POPTR_0480s00210 (8)	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43774.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.64626.1.S1_at	A	A1TS	POPTR_0006s13070	POPTR_0006s13070 (9)	scaffold_6:10288214-10288615(-) (9)	NA	NA	NA	AT3G53400.1	BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 47 (TAIR:AT5G03190.1); Has 285 Blast hits to 285 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr7g121400.1	"CPuORF47, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6463.1.S1_at	A	A1TS	POPTR_0004s19960	POPTR_0004s19960 (11)	scaffold_4:19617663-19618102(+) (11)	NA	Q9SGD6	"Arogenate dehydratase/prephenate dehydratase 6, chloroplastic"	AT1G08250.1	arogenate dehydratase 6 	LOC_Os04g33390.1	"prephenate dehydratase domain containing protein, expressed"	Medtr4g073340.1	Prephenate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process	GO:0004664|prephenate dehydratase activity	NA
PtpAffx.64654.1.S1_a_at	A	A1TS	POPTR_0005s05820	POPTR_0005s05820 (11)	scaffold_5:3805864-3806183(+) (11)	NA	Q9CRC3	UPF0235 protein C15orf40 homolog	AT1G49170.1	Protein of unknown function (DUF167) 	LOC_Os04g58970.1	"uncharacterized ACR, YggU family COG1872 containing protein, expressed"	Medtr3g144000.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64657.1.S1_at	A	A1TS	POPTR_0001s37310	POPTR_0001s37310 (10)	scaffold_1:36283764-36285066(-) (10)	NA	NA	NA	AT1G55930.1	CBS domain-containing protein / transporter associated domain-containing protein 	LOC_Os03g39640.1	"CBS domain containing protein, expressed"	Medtr5g102230.1	CBS; Transporter-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64674.1.S1_s_at	A	A1TS	POPTR_0008s08520	POPTR_0008s08520 (11)	scaffold_8:5279788-5279846(+) (11)	NA	Q337C0	UPF0496 protein 4	AT1G01550.2	Protein of unknown function (DUF793) 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64701.1.S1_x_at	A	A1TS	POPTR_0005s23810	POPTR_0005s23810 (11)	scaffold_5:22543755-22544068(-) (11)	NA	O23628	Histone H2A variant 1	AT3G54560.1	histone H2A 11 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g083350.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.64701.2.S1_a_at	A	A1TS	POPTR_0005s23810	POPTR_0005s23810 (11)	scaffold_5:22544039-22544811(-) (11)	NA	O23628	Histone H2A variant 1	AT3G54560.1	histone H2A 11 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g083350.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.64701.2.S1_at	A	A1TS	POPTR_0005s23810	POPTR_0005s23810 (11)	scaffold_5:22544887-22545185(-) (11)	NA	O23628	Histone H2A variant 1	AT3G54560.1	histone H2A 11 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g083350.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.6474.1.S1_at	A	A1TS	POPTR_0005s06490	POPTR_0005s06490 (11)	scaffold_5:4334610-4335436(+) (11)	NA	Q42546	SAL1 phosphatase	AT5G63980.1	Inositol monophosphatase family protein 	LOC_Os12g08280.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.64772.1.S1_at	A	A1MS	POPTR_0001s22750	POPTR_0001s22750 (10)	scaffold_1:21645457-21645819(+) (10)	NA	Q9LYT2	Pentatricopeptide repeat-containing protein At3g59040	AT3G59040.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g09270.1	"pentatricopeptide, putative, expressed"	Medtr1g143580.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64783.1.S1_at	A	A1TS	POPTR_0015s05800	POPTR_0015s05800 (9)	scaffold_15:6144701-6145017(+) (9)	NA	Q6TEN6	WD repeat-containing protein 91	AT3G49660.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g23430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g125820.1	"WD repeat-containing protein 91, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64784.1.S1_at	A	A1TS	POPTR_0002s04100	POPTR_0002s04100 (11)	scaffold_2:2560496-2560855(-) (11)	NA	Q54NA3	Autophagy-related protein 9	AT2G31260.1	autophagy 9 (APG9) 	LOC_Os10g07994.1	"autophagy protein 9, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64784.2.A1_at	A	A1TS	POPTR_0005s24420	POPTR_0005s24420 (11)	scaffold_5:22973994-22974420(+) (11)	NA	Q54NA3	Autophagy-related protein 9	AT2G31260.1	autophagy 9 (APG9) 	LOC_Os10g07994.1	"autophagy protein 9, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64805.1.S1_s_at	A	A1TS	POPTR_0002s25000	POPTR_0002s25000 (11)	scaffold_2:22217462-22218531(+) (11)	NA	Q9SRT0	U-box domain-containing protein 9	AT3G07360.1	plant U-box 9 	LOC_Os02g28720.1	"spotted leaf 11, putative, expressed"	Medtr7g143240.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.64818.1.S1_at	A	A1TS	POPTR_0006s03480	POPTR_0006s03480 (10)	scaffold_6:2249329-2250603(+) (10)	NA	Q8VY01	Serine carboxypeptidase-like 46	AT2G33530.1	serine carboxypeptidase-like 46 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.6482.1.S1_at	A	A1TS	POPTR_0013s08460	POPTR_0013s08460 (11)	scaffold_13:7625626-7627888(-) (11)	NA	Q6ZIB9	UPF0016 protein 4	AT5G36290.2	Uncharacterized protein family (UPF0016) 	LOC_Os11g28300.2	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr7g089540.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
PtpAffx.64825.1.S1_at	A	A1TS	POPTR_0010s20660	POPTR_0010s20660 (10)	scaffold_10:18148329-18149970(-) (10)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT3G55580.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os01g62810.2	"regulator of chromosome condensation, putative, expressed"	Medtr3g092040.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64827.2.A1_at	A	A1MS	POPTR_0010s07650	POPTR_0010s07650 (11)	scaffold_10:8652031-8652563(+) (11)	NA	A8KBE0	Oxidation resistance protein 1	AT2G05590.2	TLD-domain containing nucleolar protein 	LOC_Os06g11790.1	"TLD family protein, putative, expressed"	Medtr1g065060.1	TLDc 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6483.1.A1_s_at	A	A1TS	POPTR_0008s19600	POPTR_0008s19600 (11)	scaffold_8:13504308-13506825(-) (11)	NA	NA	NA	AT1G69980.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g38750.1	expressed protein	Medtr5g038130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64845.1.S1_s_at	A	A1TS	POPTR_0001s07430	POPTR_0001s07430 (11)	scaffold_1:5583860-5584131(+) (11)	NA	Q4KLT0	Probable E3 ubiquitin-protein ligase RNF217	AT3G14250.1	RING/U-box superfamily protein 	LOC_Os08g35060.1	"protein binding protein, putative, expressed"	Medtr8g026380.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.6485.1.S1_at	A	A1TS	POPTR_0010s07790	POPTR_0010s07790 (11)	scaffold_10:8744506-8745015(+) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT2G33410.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os10g33230.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.6486.2.S1_a_at	A	A2TS	POPTR_0012s04800	POPTR_0014s07500 (11)//POPTR_0012s04800 (11)	scaffold_12:4180494-4181391(-) (11)//scaffold_14:5637185-5638069(+) (11)	NA	Q8LEZ8	AP-1 complex subunit sigma-1	AT2G17380.1	associated protein 19 	LOC_Os03g57040.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr5g106580.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.64883.1.S1_at	A	A1TS	POPTR_0013s05590	POPTR_0013s05590 (10)	scaffold_13:3990893-3991076(+) (10)	NA	NA	NA	AT2G23840.1	HNH endonuclease 	LOC_Os07g07480.1	"HNH endonuclease domain-containing protein, putative, expressed"	Medtr7g100320.1	HNH nuclease 	NA	GO:0004519|endonuclease activity||GO:0003676|nucleic acid binding	NA
PtpAffx.64889.1.S1_s_at	A	A1TS	POPTR_0014s09920	POPTR_0014s09920 (11)	scaffold_14:7433219-7433549(-) (11)	NA	P53681	CDPK-related protein kinase	AT2G46700.1	CDPK-related kinase 3 	LOC_Os06g50030.1	"CAMK_CAMK_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr7g145870.1	Protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.64916.1.S1_at	A	A1TS	POPTR_0019s11320	POPTR_0019s11320 (11)	scaffold_19:12644615-12645998(-) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT1G71940.1	SNARE associated Golgi protein family 	LOC_Os03g49700.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6492.1.S1_at	A	A1MS	POPTR_0003s18210	POPTR_0003s18210 (11)	scaffold_3:17390764-17390862(+) (11)	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.6492.2.A1_s_at	A	A1TS	POPTR_0001s03440	POPTR_0001s03440 (11)	scaffold_1:2779960-2780424(-) (11)	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.64920.1.S1_at	A	A1TS	POPTR_0015s11730	POPTR_0015s11730 (10)	scaffold_15:12286245-12286763(+) (10)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr3g151260.1	RNA recognition motif 2 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.6494.1.A1_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41432012-41432049(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64943.1.S1_s_at	A	A1TS	POPTR_0004s22740	POPTR_0004s22740 (11)	scaffold_4:21612037-21612375(+) (11)	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.1	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6498.1.S1_at	A	A1TS	POPTR_0001s38710	POPTR_0001s38710 (11)	scaffold_1:37883142-37883658(-) (11)	NA	Q9M9F9	Interactor of constitutive active ROPs 4	AT1G78430.1	ROP interactive partner 2 	LOC_Os01g55280.1	expressed protein	Medtr8g008490.1	"Uncharacterized protein At1g78430, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64993.1.S1_s_at	A	A1TS	POPTR_0001s02930	POPTR_0001s02930 (11)	scaffold_1:2321522-2322759(-) (11)	NA	Q94EJ6	Probable methyltransferase PMT14	AT4G18030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.65.1.S1_at	A	A1TS	POPTR_0016s01160	POPTR_0016s01160 (11)	scaffold_16:478479-478784(-) (11)	NA	P19892	Ras-related protein ARA-1	AT5G47520.1	RAB GTPase homolog A5A 	LOC_Os07g44040.1	"ras-related protein, putative, expressed"	Medtr7g046180.1	"Ras-related protein ARA-1, putative "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.65004.1.S1_at	A	A1TS	POPTR_0007s01570	POPTR_0007s01570 (10)	scaffold_7:888511-889942(+) (10)	NA	NA	NA	AT2G43490.4	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g01010.1	"TBC domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65038.1.A1_at	A	A1TS	POPTR_0001s45490	POPTR_0001s45490 (10)	scaffold_1:45990351-45990968(+) (10)	NA	O65351	Subtilisin-like protease	AT1G32960.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr4g132770.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.65042.1.A1_at	A	A1TS	POPTR_0008s08120	POPTR_0008s08120 (10)	scaffold_8:5058691-5059227(+) (10)	NA	NA	NA	AT1G79420.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65048.1.S1_at	A	A1TS	POPTR_0010s22710	POPTR_0010s22710 (10)	scaffold_10:19522421-19523346(+) (10)	NA	NA	NA	AT3G12090.1	tetraspanin6 	LOC_Os05g03530.3	"tetraspanin family protein, putative, expressed"	Medtr1g121460.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.6505.1.A1_at	A	A1TS	POPTR_0012s06200	POPTR_0012s06200 (11)	scaffold_12:6226604-6226789(-) (11)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6505.1.A1_s_at	A	A1TS	POPTR_0012s06200	POPTR_0012s06200 (11)	scaffold_12:6226799-6227733(-) (11)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65050.1.A1_at	A	A2TS	POPTR_0017s13130	POPTR_0017s13130 (9)//POPTR_0125s00210 (9)	scaffold_125:35760-36250(-) (9)//scaffold_17:13290571-13291061(+) (9)	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os03g21540.1	"TKL_IRAK_CrRLK1L-1.8 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.6509.1.S1_at	A	A1TS	POPTR_0006s05960	POPTR_0006s05960 (11)	scaffold_6:4219449-4219892(+) (11)	NA	NA	NA	AT2G12400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os02g55590.3	expressed protein	Medtr8g122370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65098.1.S1_at	A	A1TS	POPTR_0006s15970	POPTR_0006s15970 (10)	scaffold_6:13735605-13735638(-) (10)	NA	NA	NA	AT1G11020.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os08g29590.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g119280.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65112.1.S1_at	A	A1MS	POPTR_0001s05090	POPTR_0001s05090 (10)	scaffold_1:3912812-3912919(-) (10)	NA	Q3E9B5	Putative peptide/nitrate transporter At5g19640	AT5G19640.1	Major facilitator superfamily protein 	LOC_Os02g48570.1	"peptide transporter PTR2, putative, expressed"	Medtr7g005620.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.6512.2.A1_a_at	A	A1TS	POPTR_0001s36140	POPTR_0001s36140 (11)	scaffold_1:34637599-34638389(-) (11)	POPTR_0001s36130 (8)	NA	NA	AT5G40740.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g22370.1	expressed protein	Medtr6g092630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65137.1.S1_at	A	A1TS	POPTR_0001s20920	POPTR_0001s20920 (10)	scaffold_1:19145321-19146750(+) (10)	NA	NA	NA	AT3G15920.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr2g126770.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.65163.1.A1_at	A	A1TS	POPTR_0001s26630	POPTR_0001s26630 (11)	scaffold_1:25618125-25618421(+) (11)	NA	Q70E96	Aldehyde dehydrogenase family 3 member F1	AT4G36250.1	aldehyde dehydrogenase 3F1 	LOC_Os02g43194.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g117470.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.65166.1.S1_at	A	A1TS	POPTR_0014s07030	POPTR_0014s07030 (11)	scaffold_14:5306225-5309391(-) (11)	NA	Q0KHU5	1-acylglycerophosphocholine O-acyltransferase 1	AT2G45670.1	calcineurin B subunit-related 	LOC_Os06g49790.1	"acyltransferase, putative, expressed"	AC233100_19.1	Calcium-binding EF-hand AC233100.6 72825-70913 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.65170.2.A1_a_at	A	A1TS	POPTR_0003s21510	POPTR_0003s21510 (10)	scaffold_3:19643442-19644192(-) (10)	NA	Q94F88	DNA (cytosine-5)-methyltransferase CMT3	AT1G69770.1	chromomethylase 3 	LOC_Os03g12570.1	expressed protein	Medtr3g073540.1	Chromo; Bromo adjacent region; C-5 cytosine-specific DNA methylase 	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.65172.1.S1_s_at	A	A1TS	POPTR_0016s08120	POPTR_0016s08120 (11)	scaffold_16:5975220-5976238(-) (11)	NA	NA	NA	AT2G37390.2	Chloroplast-targeted copper chaperone protein 	LOC_Os03g60480.1	"heavy metal-associated domain containing protein, expressed"	Medtr7g120660.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.65172.2.S1_s_at	A	A1TS	POPTR_0016s08120	POPTR_0016s08120 (11)	scaffold_16:5975308-5975373(-) (11)	NA	NA	NA	AT2G37390.2	Chloroplast-targeted copper chaperone protein 	LOC_Os03g60480.1	"heavy metal-associated domain containing protein, expressed"	Medtr7g120660.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.65180.1.A1_a_at	A	A2TS	POPTR_0002s06620	POPTR_0005s21690 (11)//POPTR_0002s06620 (11)	scaffold_2:4437351-4437733(-) (11)//scaffold_5:20803186-20803553(+) (11)	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.65180.1.A1_at	A	A1TS	POPTR_0005s21690	POPTR_0005s21690 (11)	scaffold_5:20803128-20803609(+) (11)	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.65180.2.A1_at	A	A1TS	POPTR_0002s06620	POPTR_0002s06620 (11)	scaffold_2:4437049-4437572(-) (11)	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.65195.1.A1_at	A	A1TS	POPTR_0008s23120	POPTR_0008s23120 (10)	scaffold_8:18388485-18388949(+) (10)	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g025830.1	NB-ARC; PKC-activated phosphatase-1 inhibitor 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.65229.1.A1_at	A	A1TS	POPTR_0004s14270	POPTR_0004s14270 (11)	scaffold_4:14732357-14732396(-) (11)	NA	Q9FKP8	ZF-HD homeobox protein At5g65410	AT2G02540.1	homeobox protein 21 	LOC_Os11g13930.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr7g035120.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65233.1.A1_at	A	A1TS	POPTR_0008s02870	POPTR_0008s02870 (10)	scaffold_8:1461663-1462183(-) (10)	NA	Q07469	Bark storage protein A	AT4G24350.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.6524.1.S1_at	A	A1TS	POPTR_0013s02400	POPTR_0013s02400 (11)	scaffold_13:1429385-1429659(-) (11)	NA	Q5KEW5	Mitochondrial Rho GTPase 1	AT5G27540.2	MIRO-related GTP-ase 1 	LOC_Os03g59590.1	"ATP/GTP/Ca++ binding protein, putative, expressed"	Medtr1g086440.1	"Calcium-binding EF-hand; Ras small GTPase, Rab type; ; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.65241.1.A1_at	A	A1TS	POPTR_0001s44130	POPTR_0001s44130 (10)	scaffold_1:44594268-44594435(-) (10)	NA	NA	NA	AT5G54630.1	zinc finger protein-related 	LOC_Os01g57650.1	"ZOS1-12 - C2H2 zinc finger protein, expressed"	Medtr4g111260.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6526.1.S1_a_at	A	A1TS	POPTR_0005s08980	POPTR_0005s08980 (11)	scaffold_5:6307640-6308037(-) (11)	NA	B5X4E0	Calumenin-B	AT5G08580.1	Calcium-binding EF hand family protein 	LOC_Os02g12880.4	"calcium-binding EF hand family protein, putative, expressed"	Medtr8g024400.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6526.1.S1_at	A	A1MS	POPTR_0005s08980	POPTR_0005s08980 (11)	scaffold_5:6307762-6308184(-) (11)	NA	B5X4E0	Calumenin-B	AT5G08580.1	Calcium-binding EF hand family protein 	LOC_Os02g12880.4	"calcium-binding EF hand family protein, putative, expressed"	Medtr8g024400.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65291.1.S1_s_at	A	A1TS	POPTR_0005s03670	POPTR_0005s03670 (11)	scaffold_5:2444582-2444626(-) (11)	NA	Q5KEW5	Mitochondrial Rho GTPase 1	AT5G27540.2	MIRO-related GTP-ase 1 	LOC_Os03g59590.1	"ATP/GTP/Ca++ binding protein, putative, expressed"	Medtr1g086440.1	"Calcium-binding EF-hand; Ras small GTPase, Rab type; ; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.653.10.S1_a_at	A	A2TS	POPTR_0006s25770	POPTR_0006s25770 (11)//POPTR_0018s00620 (11)	scaffold_1:28492820-28492888(-) (9)//scaffold_18:553235-553330(-) (11)//scaffold_6:24144457-24144552(-) (11)	NA	Q6ZVM7	TOM1-like protein 2	AT4G32760.1	ENTH/VHS/GAT family protein 	LOC_Os02g17350.2	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.653.16.S1_s_at	A	A1TS	POPTR_0013s13220	POPTR_0013s13220 (11)	scaffold_13:13779399-13780506(+) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.653.19.A1_at	A	A1TS	POPTR_0006s25770	POPTR_0006s25770 (11)	scaffold_6:24144238-24144727(-) (11)	NA	Q6ZVM7	TOM1-like protein 2	AT4G32760.1	ENTH/VHS/GAT family protein 	LOC_Os02g17350.2	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.653.2.A1_x_at	A	A1TA	POPTR_0002s07080	POPTR_0002s07080 (11)	scaffold_2:4812410-4813131(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.653.20.S1_at	A	A1TS	POPTR_0018s02960	POPTR_0018s02960 (11)	scaffold_18:2564138-2564237(+) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g40818.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.653.22.S1_at	A	A1TS	POPTR_0016s06010	POPTR_0016s06010 (11)	scaffold_16:3929629-3929840(+) (11)	NA	Q55DB6	Activator of 90 kDa heat shock protein ATPase homolog	AT3G12050.1	Aha1 domain-containing protein 	LOC_Os08g36150.1	"activator of 90 kDa heat shock protein ATPase homolog, putative, expressed"	Medtr7g112200.1	"Activator of Hsp90 ATPase, N-terminal "	GO:0006950|response to stress	GO:0051087|chaperone binding||GO:0001671|ATPase activator activity	GO:0005737|cytoplasm
PtpAffx.653.22.S1_s_at	A	A2TS	POPTR_0006s20890	POPTR_0006s20890 (11)//POPTR_0016s06010 (11)	scaffold_16:3929698-3929869(+) (11)//scaffold_6:19927037-19927208(+) (11)	NA	Q55DB6	Activator of 90 kDa heat shock protein ATPase homolog	AT3G12050.1	Aha1 domain-containing protein 	LOC_Os08g36150.1	"activator of 90 kDa heat shock protein ATPase homolog, putative, expressed"	Medtr7g112200.1	"Activator of Hsp90 ATPase, N-terminal "	GO:0006950|response to stress	GO:0051087|chaperone binding||GO:0001671|ATPase activator activity	GO:0005737|cytoplasm
PtpAffx.653.26.A1_x_at	A	A1TA	POPTR_0002s07080	POPTR_0002s07080 (11)	scaffold_2:4812410-4812929(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.653.3.S1_x_at	A	A1TA	POPTR_0002s07080	POPTR_0002s07080 (11)	scaffold_2:4812406-4813062(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.653.5.A1_x_at	A	A1TA	POPTR_0002s07080	POPTR_0002s07080 (11)	scaffold_2:4813149-4813440(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.653.8.S1_s_at	A	A1TS	POPTR_0018s02960	POPTR_0018s02960 (11)	scaffold_18:2563822-2564136(+) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g40818.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65303.2.S1_s_at	A	A1TS	POPTR_0016s04110	POPTR_0016s04110 (11)	scaffold_16:2338720-2339395(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os03g23010.1	expressed protein	Medtr7g107690.1	"ERD15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65322.1.S1_s_at	A	A1TS	POPTR_0008s01330	POPTR_0008s01330 (11)	scaffold_8:649344-650555(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.1	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.65344.1.S1_at	A	A1TS	POPTR_0017s11190	POPTR_0017s11190 (11)	scaffold_17:10853150-10853692(+) (11)	NA	P50699	Thaumatin-like protein	AT5G40020.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g27280.1	"thaumatin, putative, expressed"	Medtr6g010140.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65352.1.S1_s_at	A	A1TS	POPTR_0016s08930	POPTR_0016s08930 (11)	scaffold_16:6722565-6723335(-) (11)	NA	B9IJ21	"Adenylosuccinate synthetase, chloroplastic"	AT3G57610.1	adenylosuccinate synthase 	LOC_Os03g07840.1	"adenylosuccinate synthetase, chloroplast precursor, putative, expressed"	Medtr7g110920.1	Adenylosuccinate synthetase 	GO:0006164|purine nucleotide biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004019|adenylosuccinate synthase activity||GO:0000287|magnesium ion binding||GO:0005525|GTP binding	NA
PtpAffx.65360.1.S1_s_at	A	A1TS	POPTR_0001s34190	POPTR_0001s34190 (11)	scaffold_1:32315663-32316324(-) (11)	NA	NA	NA	AT3G01780.1	ARM repeat superfamily protein 	LOC_Os02g55010.1	expressed protein	Medtr8g142250.1	Calcium-binding EF-hand; Heme-binding A 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6537.1.A1_at	A	A1TS	POPTR_0013s01800	POPTR_0013s01800 (11)	scaffold_13:1029550-1029820(-) (11)	NA	Q9MA63	REF/SRPP-like protein At3g05500	AT3G05500.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr2g015120.1	Rubber elongation factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6537.2.A1_a_at	A	A1TS	POPTR_0013s01800	POPTR_0013s01800 (11)	scaffold_13:1029316-1031296(-) (11)	NA	Q9MA63	REF/SRPP-like protein At3g05500	AT3G05500.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr2g015120.1	Rubber elongation factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65380.1.S1_at	A	A1TS	POPTR_0004s18420	POPTR_0004s18420 (9)	scaffold_4:18330321-18330754(+) (9)	NA	Q8BFY9	Transportin-1	AT2G16950.2	transportin 1 	LOC_Os04g59494.4	"transportin-2, putative, expressed"	Medtr2g006800.1	Armadillo-like helical 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.6540.1.S1_at	A	A1TS	POPTR_0014s12740	POPTR_0014s12740 (10)	scaffold_14:9380715-9381236(-) (10)	NA	NA	NA	AT3G62900.1	CW-type Zinc Finger 	LOC_Os07g47360.3	"CW-type Zinc Finger, putative, expressed"	Medtr7g130050.1	"Zinc finger, CW-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.65420.1.S1_at	A	A1TS	POPTR_0004s08870	POPTR_0004s08870 (11)	scaffold_4:7451458-7451679(+) (11)	NA	NA	NA	AT5G37730.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g21925.1	expressed protein	Medtr1g034970.1	"Senescence-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65426.1.S1_at	A	A1TS	POPTR_0003s07980	POPTR_0003s07980 (11)	scaffold_3:9463789-9464064(+) (11)	NA	NA	NA	AT2G35658.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g013350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6547.1.S1_at	A	A1TS	POPTR_0018s11850	POPTR_0018s11850 (11)	scaffold_18:12501468-12501687(-) (11)	NA	Q54YG5	Trafficking protein particle complex subunit 5	AT5G58030.1	Transport protein particle (TRAPP) component 	LOC_Os01g51220.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr3g093070.1	"Transport protein particle (TRAPP) component, Bet3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65481.1.S1_at	A	A1MS	POPTR_0016s12680	POPTR_0016s12680 (10)	scaffold_16:12053770-12053961(-) (10)	NA	O80452	AMP deaminase	AT2G38280.2	"AMP deaminase, putative / myoadenylate deaminase, putative "	LOC_Os07g49270.2	"AMP deaminase, putative, expressed"	AC233100_67.1	AMP deaminase AC233100.6 286316-296871 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
PtpAffx.655.1.A1_at	A	A1TS	POPTR_0002s26190	POPTR_0002s26190 (11)	scaffold_2:23202216-23202653(-) (11)	NA	A1T3J8	Putative S-adenosyl-L-methionine-dependent methyltransferase Mvan_0910	AT5G42760.1	Leucine carboxyl methyltransferase 	LOC_Os03g56370.1	"methyltransferase, putative, expressed"	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.6556.1.S1_at	A	A1TS	POPTR_0008s02560	POPTR_0008s02560 (11)	scaffold_8:1260289-1260723(+) (11)	NA	Q8W571	RING-H2 finger protein ATL32	AT4G40070.1	RING/U-box superfamily protein 	LOC_Os11g05300.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65560.1.S1_at	A	A1TS	POPTR_0018s06460	POPTR_0018s06460 (11)	scaffold_18:6373691-6374253(-) (11)	NA	Q95YI5	UDP-sugar transporter UST74c	AT5G19980.1	golgi nucleotide sugar transporter 4 	LOC_Os08g10350.1	"integral membrane family protein, putative, expressed"	Medtr8g119020.1	"integral membrane family protein, putative "	NA	NA	GO:0016020|membrane
PtpAffx.6557.1.A1_at	A	A1TS	POPTR_0008s13200	POPTR_0008s13200 (11)	scaffold_8:8652667-8653095(+) (11)	NA	Q9CAC1	Endoglucanase 8	AT1G70710.1	glycosyl hydrolase 9B1 	LOC_Os06g14540.1	"endoglucanase, putative, expressed"	Medtr4g157670.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.6560.1.S1_a_at	A	A1TS	POPTR_0001s01760	POPTR_0001s01760 (11)	scaffold_1:1286042-1286215(+) (11)	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6560.2.S1_a_at	A	A1TS	POPTR_0001s01760	POPTR_0001s01760 (11)	scaffold_1:1285936-1286239(+) (11)	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65630.1.A1_at	A	A1TS	POPTR_0002s12490	POPTR_0002s12490 (11)	scaffold_2:9267792-9269339(+) (11)	NA	NA	NA	AT5G47830.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g06390.1	expressed protein	Medtr1g023970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6564.1.S1_at	A	A1TS	POPTR_0015s12880	POPTR_0015s12880 (9)	scaffold_15:13068426-13070186(-) (9)	NA	Q9NZC7	WW domain-containing oxidoreductase	AT4G23420.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.65641.1.A1_at	A	A1TS	POPTR_0011s14080	POPTR_0011s14080 (11)	scaffold_11:16647679-16647957(+) (11)	NA	NA	NA	AT4G27020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g58114.1	expressed protein	Medtr5g099460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65641.2.S1_s_at	A	A1TS	POPTR_0001s44890	POPTR_0001s44890 (11)	scaffold_1:45260674-45261162(+) (11)	NA	NA	NA	AT4G27020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g58114.1	expressed protein	Medtr5g099460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65682.1.S1_at	A	A1TS	POPTR_0018s11800	POPTR_0018s11800 (10)	scaffold_18:12464436-12464999(-) (10)	NA	Q9ZUG9	Transcription factor bHLH66	AT2G24260.1	LJRHL1-like 1 	LOC_Os02g55250.1	"BHLH transcription factor, putative"	Medtr8g145720.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.65682.2.S1_at	A	A1TS	POPTR_0006s20070	POPTR_0006s20070 (11)	scaffold_6:19105752-19106290(-) (11)	NA	Q9ZUG9	Transcription factor bHLH66	AT2G24260.1	LJRHL1-like 1 	LOC_Os09g25040.1	"joka8, putative, expressed"	Medtr8g145720.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.65682.3.S1_at	A	A1MS	POPTR_0018s11800	POPTR_0018s11800 (11)	scaffold_18:12466364-12466694(-) (11)	NA	Q9ZUG9	Transcription factor bHLH66	AT2G24260.1	LJRHL1-like 1 	LOC_Os02g55250.1	"BHLH transcription factor, putative"	Medtr8g145720.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.65710.1.S1_s_at	A	A1TS	POPTR_0006s04960	POPTR_0006s04960 (11)	scaffold_6:3460724-3461363(-) (11)	NA	O50314	Magnesium-chelatase subunit H	AT5G13630.1	"magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) "	LOC_Os03g20700.2	"magnesium-chelatase, putative, expressed"	NA	NA	GO:0009058|biosynthetic process	NA	NA
PtpAffx.6574.2.S1_at	A	A1TS	POPTR_0008s04920	POPTR_0008s04920 (11)	scaffold_8:2847203-2849318(+) (11)	NA	Q9FRL8	Glutathione S-transferase DHAR2	AT1G75270.1	dehydroascorbate reductase 2 	LOC_Os06g12630.2	"glutathione S-transferase, N-terminal domain containing protein, expressed"	NA	NA	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.65740.1.A1_at	A	A1TS	POPTR_0002s23680	POPTR_0002s23680 (10)	scaffold_2:21221862-21223929(+) (10)	NA	P31828	Probable zinc protease pqqL	AT5G42390.1	Insulinase (Peptidase family M16) family protein 	LOC_Os06g41990.2	"M16 domain containing zinc peptidase, putative, expressed"	Medtr5g007490.1	"Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.65744.1.A1_at	A	A1TS	POPTR_0001s09690	POPTR_0001s09690 (9)	scaffold_1:7412384-7412706(+) (9)	NA	NA	NA	AT1G63830.3	PLAC8 family protein 	LOC_Os03g03180.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65771.2.A1_a_at	A	A1TS	POPTR_0004s03280	POPTR_0004s03280 (11)	scaffold_4:2225088-2226908(-) (11)	NA	Q55G83	Probable serine/threonine-protein kinase abkC	AT1G11390.1	Protein kinase superfamily protein 	LOC_Os04g56510.1	"ABC1 family domain containing protein, putative, expressed"	Medtr4g124680.1	ABC-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6580.1.S1_at	A	A1TS	POPTR_0001s40130	POPTR_0001s40130 (11)	scaffold_1:39437970-39439042(+) (11)	NA	Q93ZB6	"Uroporphyrinogen decarboxylase 1, chloroplastic"	AT3G14930.2	Uroporphyrinogen decarboxylase 	LOC_Os01g43390.1	"uroporphyrinogen decarboxylase, putative, expressed"	Medtr2g092140.1	Uroporphyrinogen decarboxylase (URO-D) 	GO:0006779|porphyrin biosynthetic process	GO:0004853|uroporphyrinogen decarboxylase activity	NA
PtpAffx.6581.1.A1_x_at	A	A1TS	POPTR_0001s37560	POPTR_0001s37560 (11)	scaffold_1:36537467-36537834(-) (11)	NA	NA	NA	AT3G13175.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6581.10.S1_a_at	A	A1TS	POPTR_0008s14320	POPTR_0008s14320 (11)	scaffold_8:9491143-9491329(-) (11)	POPTR_0010s10850 (8)	Q9ZUM0	Zinc finger CCCH domain-containing protein 17	AT2G02160.1	CCCH-type zinc finger family protein 	LOC_Os04g57600.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119790.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.6581.11.S1_at	A	A1TS	POPTR_0008s14320	POPTR_0008s14320 (11)	scaffold_8:9493712-9493952(-) (11)	NA	Q9ZUM0	Zinc finger CCCH domain-containing protein 17	AT2G02160.1	CCCH-type zinc finger family protein 	LOC_Os04g57600.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119790.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.6581.5.S1_at	A	A1TS	POPTR_0011s08980	POPTR_0011s08980 (11)	scaffold_11:11019374-11019783(-) (11)	NA	NA	NA	AT1G29980.1	"Protein of unknown function, DUF642 "	LOC_Os01g55190.1	expressed protein	Medtr2g024780.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6581.6.S1_a_at	A	A1TS	POPTR_0008s14320	POPTR_0008s14320 (11)	scaffold_8:9490677-9490812(-) (11)	NA	Q9ZUM0	Zinc finger CCCH domain-containing protein 17	AT2G02160.1	CCCH-type zinc finger family protein 	LOC_Os04g57600.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119790.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.6581.7.A1_a_at	A	A1TS	POPTR_0003s13030	POPTR_0003s13030 (11)	scaffold_3:13435290-13436430(-) (11)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT4G35785.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g15890.2	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.65824.1.A1_at	A	A1TS	POPTR_0001s03890	POPTR_0001s03890 (9)	scaffold_1:3123638-3125894(-) (9)	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT5G56350.1	Pyruvate kinase family protein 	LOC_Os01g16960.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.65832.1.A1_at	A	A1TS	POPTR_0013s01330	POPTR_0013s01330 (11)	scaffold_13:739928-740438(-) (11)	NA	Q40554	Eukaryotic translation initiation factor 3 subunit A	AT4G11420.1	eukaryotic translation initiation factor 3A 	LOC_Os01g03070.2	"transposon protein, putative, unclassified, expressed"	Medtr7g118360.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65838.1.S1_at	A	A1MS	POPTR_0009s14740	POPTR_0009s14740 (11)	scaffold_9:11491112-11491414(+) (11)	NA	Q93ZB9	Fatty acyl-CoA reductase 3	AT4G33790.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65875.1.A1_at	A	A1TS	POPTR_0018s05800	POPTR_0018s05800 (11)	scaffold_18:5435863-5436545(-) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.65890.1.S1_s_at	A	A1TS	POPTR_0011s02960	POPTR_0011s02960 (11)	scaffold_11:2908559-2910041(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.659.1.A1_at	A	A1TS	POPTR_0017s09850	POPTR_0017s09850 (11)	scaffold_17:8570551-8571088(+) (11)	NA	Q9FKS0	"Uridine kinase-like protein 1, chloroplastic"	AT5G40870.1	uridine kinase/uracil phosphoribosyltransferase 1 	LOC_Os09g32820.1	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.65904.1.S1_at	A	A1TA	POPTR_0015s09910	POPTR_0015s09910 (9)	scaffold_15:10973108-10973314(+) (9)	NA	P54153	Peptide methionine sulfoxide reductase (Fragment)	AT5G61640.1	peptidemethionine sulfoxide reductase 1 	LOC_Os10g41400.1	"peptide methionine sulfoxide reductase, putative, expressed"	AC235753_7.1	Methionine sulfoxide reductase A AC235753.1 37949-37160 F EGN_Mt090430 200	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0055114|oxidation reduction	"GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor"""	NA
PtpAffx.65912.1.S1_at	A	A1TS	POPTR_0006s07170	POPTR_0006s07170 (11)	scaffold_6:5150431-5151118(-) (11)	NA	Q9SV15	Probable WRKY transcription factor 11	AT4G31550.1	WRKY DNA-binding protein 11 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr8g130290.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.65925.1.A1_at	A	A1TS	POPTR_0011s12420	POPTR_0011s12420 (9)	scaffold_11:15171920-15172387(+) (9)	NA	Q9ZNU2	NAC domain-containing protein 18	AT3G15510.1	NAC domain containing protein  2 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.6596.1.A1_a_at	A	A1TS	POPTR_0002s03220	POPTR_0002s03220 (11)	scaffold_2:1982543-1982973(-) (11)	NA	Q9FMM0	Probable ubiquitin-conjugating enzyme E2 18	AT5G42990.1	ubiquitin-conjugating enzyme 18 	LOC_Os03g47770.1	"ubiquitin-conjugating enzyme E2 W, putative, expressed"	Medtr5g021210.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.6596.6.S1_a_at	A	A1TS	POPTR_0008s20340	POPTR_0008s20340 (10)	scaffold_8:14134657-14134991(+) (10)	NA	Q06138	Calcium-binding protein 39	AT5G18940.1	Mo25 family protein 	LOC_Os07g45280.1	"Mo25, putative, expressed"	Medtr2g026120.1	Mo25-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65968.1.S1_at	A	A1TS	POPTR_0006s15840	POPTR_0006s15840 (9)	scaffold_6:13514532-13515196(-) (9)	NA	P16260	Graves disease carrier protein	AT4G26180.1	Mitochondrial substrate carrier family protein 	LOC_Os02g13300.1	"mitochondrial carrier protein, putative, expressed"	Medtr6g092900.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65993.1.S1_at	A	A1TA	POPTR_0018s11150	POPTR_0018s11150 (10)	scaffold_18:11936619-11937151(+) (10)	NA	B0W2S0	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65996.1.S1_at	A	A1TS	POPTR_0004s07430	POPTR_0004s07430 (11)	scaffold_4:6131952-6133755(+) (11)	NA	Q8H191	Probable polyamine oxidase 4	AT1G65840.1	polyamine oxidase 4 	LOC_Os04g57560.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g086600.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.66014.1.A1_at	A	A1TS	POPTR_0017s02780	POPTR_0017s02780 (11)	scaffold_17:1994511-1995156(+) (11)	NA	Q9ZU95	"Nudix hydrolase 17, mitochondrial"	AT2G01670.1	nudix hydrolase homolog 17 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g087460.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.66060.1.A1_at	A	A1MS	POPTR_0001s34440	POPTR_0001s34440 (9)	scaffold_1:32575228-32575734(+) (9)	NA	NA	NA	AT1G29350.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os01g47430.2	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr4g136700.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6610.1.A1_a_at	A	A1TS	POPTR_0001s05760	POPTR_0001s05760 (11)	scaffold_1:4510694-4510877(+) (11)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr4g118330.1	RNA-binding region RNP-1 (RNA recognition motif); U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.6610.1.A1_at	A	A1TS	POPTR_0001s05760	POPTR_0001s05760 (11)	scaffold_1:4510104-4510674(+) (11)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr4g118330.1	RNA-binding region RNP-1 (RNA recognition motif); U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.6610.1.A1_x_at	A	A1TS	POPTR_0001s05760	POPTR_0001s05760 (11)	scaffold_1:4510104-4510874(+) (11)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr4g118330.1	RNA-binding region RNP-1 (RNA recognition motif); U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.6610.1.A2_a_at	A	A1TS	POPTR_0001s05760	POPTR_0001s05760 (11)	scaffold_1:4513735-4514394(+) (11)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr4g118330.1	RNA-binding region RNP-1 (RNA recognition motif); U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.6610.2.S1_s_at	A	A1TS	POPTR_0003s20310	POPTR_0003s20310 (11)	scaffold_3:18821151-18821242(-) (11)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr4g118330.1	RNA-binding region RNP-1 (RNA recognition motif); U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.6610.4.A1_at	A	A1MS	POPTR_0001s05760	POPTR_0001s05760 (11)	scaffold_1:4510316-4510651(+) (11)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr4g118330.1	RNA-binding region RNP-1 (RNA recognition motif); U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.66132.1.S1_a_at	A	A1TS	POPTR_0002s01890	POPTR_0002s01890 (11)	scaffold_2:1016940-1017350(-) (11)	NA	Q8L9W3	E3 ubiquitin-protein ligase ATL23	AT5G42200.1	RING/U-box superfamily protein 	LOC_Os09g29310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g032030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6615.1.A1_s_at	A	A1TS	POPTR_0012s11590	POPTR_0012s11590 (11)	scaffold_12:11954861-11955372(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6619.1.A1_at	A	A1TS	POPTR_0013s02740	POPTR_0013s02740 (11)	scaffold_13:1647750-1649304(-) (11)	NA	Q9ZVL6	"UPF0603 protein At1g54780, chloroplastic"	AT1G54780.1	thylakoid lumen 18.3 kDa protein 	LOC_Os05g33280.1	"thylakoid lumen protein, putative, expressed"	Medtr1g099000.1	Protein of unknown function DUF477 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.662.1.A1_at	A	A1TS	POPTR_0004s16720	POPTR_0004s16720 (11)	scaffold_4:17105611-17106119(-) (11)	NA	Q9SDZ9	Purple acid phosphatase 2	AT2G16430.2	purple acid phosphatase 10 	LOC_Os01g56880.1	"purple acid phosphatase precursor, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.66224.1.S1_at	A	A1TS	POPTR_0016s07200	POPTR_0016s07200 (11)	scaffold_16:5012940-5013063(+) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g26200.1	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66224.1.S1_s_at	A	A1TS	POPTR_0016s07200	POPTR_0016s07200 (11)	scaffold_16:5012737-5012948(+) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g26200.1	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66247.1.S1_at	A	A1TS	POPTR_0006s12200	POPTR_0006s12200 (11)	scaffold_6:9350443-9350940(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g01710.1	expressed protein	Medtr1g074280.1	Prefoldin 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
PtpAffx.66249.1.S1_at	A	A1TS	POPTR_0005s09960	POPTR_0005s09960 (11)	scaffold_5:7057892-7058263(+) (11)	NA	NA	NA	AT1G79160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66254.1.S1_at	A	A1TS	POPTR_0012s14420	POPTR_0012s14420 (11)	scaffold_12:14319413-14319951(-) (11)	NA	Q5EA79	Aldose 1-epimerase	AT3G47800.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g38530.1	"aldose 1-epimerase, putative, expressed"	Medtr8g112430.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.66270.1.S1_s_at	A	A1MS	POPTR_0003s17890	POPTR_0003s17890 (11)	scaffold_3:17134673-17134923(+) (11)	NA	NA	NA	AT1G80700.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80980.1); Has 476 Blast hits to 340 proteins in 85 species: Archae - 2; Bacteria - 44; Metazoa - 84; Fungi - 36; Plants - 40; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink). 	LOC_Os08g17610.1	expressed protein	Medtr8g070810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6629.1.S1_at	A	A1TS	POPTR_0010s21340	POPTR_0010s21340 (11)	scaffold_10:18664644-18664848(+) (11)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6629.2.S1_at	A	A1TS	POPTR_0008s05420	POPTR_0008s05420 (10)	scaffold_8:3138829-3139230(-) (10)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66318.1.S1_a_at	A	A1TS	POPTR_0005s27930	POPTR_0005s27930 (11)	scaffold_5:25376693-25376808(-) (11)	NA	Q9C7S0	bZIP transcription factor 60	AT1G42990.1	basic region/leucine zipper motif 60 	LOC_Os06g41770.1	"bZIP transcription factor domain containing protein, expressed"	CU179634_18.1	Basic-leucine zipper (bZIP) transcription factor CU179634.6 73617-71019 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.66318.2.S1_at	A	A1MS	POPTR_0005s27930	POPTR_0005s27930 (11)	scaffold_5:25376173-25376703(-) (11)	NA	Q9C7S0	bZIP transcription factor 60	AT1G42990.1	basic region/leucine zipper motif 60 	LOC_Os06g41770.1	"bZIP transcription factor domain containing protein, expressed"	CU179634_18.1	Basic-leucine zipper (bZIP) transcription factor CU179634.6 73617-71019 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.6633.1.S1_at	A	A1TS	POPTR_0019s09190	POPTR_0019s09190 (11)	scaffold_19:10764419-10765704(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G26590.1	MATE efflux family protein 	LOC_Os08g43654.1	"MATE efflux family protein, putative, expressed"	Medtr5g034470.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.66341.1.S1_a_at	A	A1TS	POPTR_0009s01690	POPTR_0009s01690 (11)	scaffold_9:2206513-2207241(+) (11)	NA	Q9FS88	"Isovaleryl-CoA dehydrogenase 1, mitochondrial"	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.2	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.66373.1.S1_at	A	A1TS	POPTR_0002s20900	POPTR_0002s20900 (11)	scaffold_2:17125086-17125238(-) (11)	NA	O65857	Probable glutathione S-transferase GSTF1	AT3G62760.1	Glutathione S-transferase family protein 	LOC_Os01g27260.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.664.2.S1_a_at	A	A1TS	POPTR_0006s23650	POPTR_0006s23650 (11)	scaffold_6:22363723-22363901(+) (11)	NA	B9HCR2	Methylthioribose-1-phosphate isomerase	AT2G05830.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os11g11050.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr2g049600.1	Initiation factor 2B alpha/beta/delta 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.664.4.S1_a_at	A	A1TS	POPTR_0006s23650	POPTR_0006s23650 (11)	scaffold_6:22364152-22364269(+) (11)	NA	B9HCR2	Methylthioribose-1-phosphate isomerase	AT2G05830.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os11g11050.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr2g049600.1	Initiation factor 2B alpha/beta/delta 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.66401.1.S1_at	A	A1TS	POPTR_0001s24650	POPTR_0001s24650 (11)	scaffold_1:23915275-23915813(+) (11)	NA	B7GIR2	GTPase obg	AT1G07615.1	GTP-binding protein Obg/CgtA 	LOC_Os11g47800.1	"spo0B-associated GTP-binding protein, putative, expressed"	Medtr1g087150.1	Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.6641.1.S1_at	A	A1TS	POPTR_0005s04640	POPTR_0005s04640 (11)	scaffold_5:3114701-3115178(+) (11)	NA	B9DHD7	Vesicle-associated protein 2-2	AT1G08820.2	vamp/synaptobrevin-associated protein 27-2 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr8g139690.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.66415.1.A1_s_at	A	A1TS	POPTR_0002s24540	POPTR_0002s24540 (11)	scaffold_2:21895047-21895612(-) (11)	NA	Q9SFU3	Purple acid phosphatase 15	AT3G07130.1	purple acid phosphatase 15 	LOC_Os03g63074.2	"Ser/Thr protein phosphatase family protein, expressed"	Medtr3g105420.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.66419.1.S1_at	A	A1TS	POPTR_0001s33930	POPTR_0001s33930 (11)	scaffold_1:32094369-32094915(+) (11)	NA	Q9XGM1	V-type proton ATPase subunit D	AT3G58730.1	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) 	LOC_Os04g55040.2	"vacuolar ATP synthase subunit D 1, putative, expressed"	Medtr4g022080.1	"H+-transporting two-sector ATPase, D subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.66419.2.A1_at	A	A1MS	POPTR_0001s33930	POPTR_0001s33930 (11)	scaffold_1:32093043-32093600(+) (11)	NA	Q9XGM1	V-type proton ATPase subunit D	AT3G58730.1	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) 	LOC_Os04g55040.2	"vacuolar ATP synthase subunit D 1, putative, expressed"	Medtr4g022080.1	"H+-transporting two-sector ATPase, D subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.66439.1.S1_a_at	A	A1TS	POPTR_0007s10610	POPTR_0007s10610 (11)	scaffold_7:10651038-10651285(-) (11)	NA	Q8T9S7	"Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN"	AT3G19420.1	PTEN 2 	LOC_Os12g21890.1	"PTEN, putative, expressed"	Medtr5g016480.1	"Dual specificity protein phosphatase; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6645.1.S1_s_at	A	A1TS	POPTR_0014s05270	POPTR_0014s05270 (10)	scaffold_14:3989488-3989521(+) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G60470.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010620.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66453.1.S1_at	A	A1TS	POPTR_0016s00800	POPTR_0016s00800 (11)	scaffold_16:295138-296677(-) (11)	NA	P53665	"Acyl carrier protein, mitochondrial"	AT5G47630.2	mitochondrial acyl carrier protein 3 	LOC_Os03g39860.1	"acyl carrier protein, putative, expressed"	Medtr8g148730.1	Acyl carrier protein (ACP) 	NA	GO:0048037|cofactor binding	NA
PtpAffx.6646.1.A1_at	A	A1TS	POPTR_0009s11010	POPTR_0009s11010 (11)	scaffold_9:9300080-9300879(+) (11)	NA	Q940H6	Serine/threonine-protein kinase SRK2E	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os03g41460.1	"CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g096830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.66493.1.S1_at	A	A1MS	POPTR_0010s18390	POPTR_0010s18390 (10)	scaffold_10:16635787-16636183(+) (10)	NA	Q941Q3	Zinc finger CCCH domain-containing protein 37	AT3G12680.1	floral homeotic protein (HUA1) 	LOC_Os01g42970.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g089530.1	"Zinc finger, CCCH-type; Sugar transporter superfamily "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.66499.1.A1_at	A	A1TS	POPTR_0006s05940	POPTR_0006s05940 (11)	scaffold_6:4193010-4195366(+) (11)	NA	Q0WPT7	"Uncharacterized methyltransferase At2g41040, chloroplastic"	AT2G41040.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g43800.1	"methyltransferase domain containing protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.66500.1.S1_at	A	A1TS	POPTR_0003s15660	POPTR_0003s15660 (10)	scaffold_3:15424324-15426565(-) (10)	NA	Q8DHG3	Tryptophanyl-tRNA synthetase	AT2G25840.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g54020.1	"tRNA synthetase, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.66534.1.S1_s_at	A	A1TS	POPTR_0017s12600	POPTR_0017s12600 (11)	scaffold_17:12810547-12810924(+) (11)	NA	NA	NA	AT5G39380.1	Plant calmodulin-binding protein-related 	LOC_Os03g11290.1	expressed protein	Medtr6g013960.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66538.1.S1_at	A	A1TS	POPTR_0006s29400	POPTR_0006s29400 (10)	scaffold_6:26765903-26766965(-) (10)	NA	Q1RIM1	DNA topoisomerase 1	AT4G31210.1	"DNA topoisomerase, type IA, core "	LOC_Os06g16980.2	"DNA topoisomerase I family protein, expressed"	Medtr1g010510.1	"DNA topoisomerase I, ATP-binding; TOPRIM; ; "	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003916|DNA topoisomerase activity	GO:0005694|chromosome
PtpAffx.66552.1.S1_at	A	A1TS	POPTR_0001s38150	POPTR_0001s38150 (11)	scaffold_1:37225393-37225831(-) (11)	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.66598.1.S1_at	A	A1TS	POPTR_0015s06430	POPTR_0015s06430 (9)	scaffold_15:7180985-7181366(+) (9)	NA	NA	NA	AT1G13360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g158300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6660.1.S1_at	A	A1TS	POPTR_0011s05310	POPTR_0011s05310 (11)	scaffold_11:5196794-5197484(+) (11)	NA	NA	NA	AT4G32480.1	Protein of unknown function (DUF506)  	LOC_Os01g54340.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr2g017370.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6660.2.S1_at	A	A1TS	POPTR_0004s04420	POPTR_0004s04420 (10)	scaffold_4:3186106-3186594(+) (10)	NA	NA	NA	AT4G32480.1	Protein of unknown function (DUF506)  	LOC_Os01g54340.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr2g017370.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66608.1.S1_at	A	A1TS	POPTR_0006s26790	POPTR_0006s26790 (11)	scaffold_6:24883488-24884649(+) (11)	NA	NA	NA	AT5G11270.1	overexpressor of cationic peroxidase 3 	LOC_Os06g39906.1	"homeobox domain containing protein, expressed"	Medtr3g136710.1	Calcium-binding EF-hand; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66619.1.S1_at	A	A1TS	POPTR_0001s32470	POPTR_0001s32470 (10)	scaffold_1:30798140-30799462(+) (10)	NA	NA	NA	AT5G49210.2	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g031510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66631.1.S1_a_at	A	A1TS	POPTR_0019s00290	POPTR_0019s00290 (11)	scaffold_19:85393-86325(+) (11)	NA	Q6DEL2	Cleft lip and palate transmembrane protein 1 homolog	AT5G08500.1	Transmembrane CLPTM1 family protein 	LOC_Os04g36050.1	"cleft lip and palate transmembrane protein 1, putative, expressed"	Medtr3g151740.1	Cleft lip and palate transmembrane 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66631.3.S1_a_at	A	A3TS	POPTR_0004s14210	POPTR_0019s00290 (11)//POPTR_0004s14210 (11)//POPTR_0012s09530 (9)	scaffold_12:10523463-10523551(-) (9)//scaffold_19:85367-85455(+) (11)//scaffold_4:14694110-14694198(+) (11)	NA	Q6DEL2	Cleft lip and palate transmembrane protein 1 homolog	AT5G08500.1	Transmembrane CLPTM1 family protein 	LOC_Os04g36050.1	"cleft lip and palate transmembrane protein 1, putative, expressed"	Medtr3g151740.1	Cleft lip and palate transmembrane 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66641.1.S1_s_at	A	A1TS	POPTR_0006s12290	POPTR_0006s12290 (11)	scaffold_6:9441268-9441748(-) (11)	NA	Q9UNX4	WD repeat-containing protein 3	AT3G21540.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g05720.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.66644.1.S1_at	A	A1TS	POPTR_0005s09240	POPTR_0005s09240 (11)	scaffold_5:6451678-6451919(-) (11)	NA	P57742	Probable prefoldin subunit 5	AT5G23290.1	prefoldin 5 	LOC_Os10g34670.1	"prefoldin, putative, expressed"	Medtr1g143760.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.66652.1.S1_at	A	A1TA	POPTR_0010s12775	POPTR_0010s12775 (11)	scaffold_10:12731967-12732031(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66653.1.S1_at	A	A1TS	POPTR_0012s02310	POPTR_0012s02310 (11)	scaffold_12:1917189-1918756(-) (11)	NA	NA	NA	AT5G24280.1	gamma-irradiation and mitomycin c induced 1 	LOC_Os01g13404.1	"ATP binding protein, putative, expressed"	Medtr1g009120.1	"ATP binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66655.1.S1_at	A	A1TS	POPTR_0010s25780	POPTR_0010s25780 (10)	scaffold_10:21288887-21288959(-) (10)	NA	Q8H1G3	Metal tolerance protein C4	AT1G51610.1	Cation efflux family protein 	LOC_Os04g23180.1	"cation efflux family protein, putative, expressed"	NA	NA	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.66669.1.S1_s_at	A	A2TS	POPTR_0008s18150	POPTR_0010s06270 (11)//POPTR_0008s18150 (11)	scaffold_10:7687755-7688110(-) (11)//scaffold_8:12165641-12165996(+) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT1G67720.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	Medtr7g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.66672.1.S1_at	A	A1TS	POPTR_0006s02580	POPTR_0006s02580 (11)	scaffold_6:1665269-1666226(+) (11)	NA	Q9LQU4	Uncharacterized protein At1g14870	AT2G40935.1	PLAC8 family protein 	LOC_Os01g16210.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr5g008300.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66712.1.S1_at	A	A1TS	POPTR_0001s30580	POPTR_0001s30580 (11)	scaffold_1:29072602-29073263(+) (11)	NA	Q54MI6	TIP41-like protein	AT4G34270.1	TIP41-like family protein 	LOC_Os03g55270.1	"TIP41, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66734.1.S1_at	A	A1TS	POPTR_0011s13520	POPTR_0011s13520 (10)	scaffold_11:16260601-16261237(+) (10)	NA	Q9FIT9	21.7 kDa class VI heat shock protein	AT5G54660.1	HSP20-like chaperones superfamily protein 	LOC_Os05g42120.1	"heat shock protein, putative, expressed"	Medtr2g096660.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6676.1.S1_s_at	A	A1TS	POPTR_0003s10540	POPTR_0003s10540 (11)	scaffold_3:11483584-11484934(+) (11)	NA	Q12996	Cleavage stimulation factor subunit 3	AT1G17760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g38380.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr6g017970.1	Suppressor of forked; 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	GO:0005634|nucleus
PtpAffx.66766.1.S1_at	A	A2TS	POPTR_0001s36140	POPTR_0001s36140 (11)//POPTR_0001s36130 (10)	scaffold_1:34624624-34625697(-) (10)//scaffold_1:34639419-34640637(-) (11)	NA	NA	NA	AT5G40740.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g22370.1	expressed protein	Medtr6g092630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66774.1.S1_at	A	A1TS	POPTR_0005s20390	POPTR_0005s20390 (10)	scaffold_5:19452626-19453028(+) (10)	NA	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66778.1.S1_a_at	A	A1TS	POPTR_0002s11190	POPTR_0002s11190 (11)	scaffold_2:8268016-8268532(+) (11)	NA	NA	NA	AT5G65520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g10940.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g149660.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66783.1.S1_at	A	A1TS	POPTR_0003s19340	POPTR_0003s19340 (9)	scaffold_3:18101659-18103155(-) (10)	POPTR_0001s06900 (8)	Q96FV9	THO complex subunit 1	AT5G09860.1	nuclear matrix protein-related 	LOC_Os03g01970.1	"THO complex subunit 1, putative, expressed"	Medtr3g005340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66786.1.S1_at	A	A1TS	POPTR_0008s04400	POPTR_0008s04400 (11)	scaffold_8:2471428-2471731(+) (11)	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.66788.1.S1_at	A	A1TS	POPTR_0006s28060	POPTR_0006s28060 (9)	scaffold_6:25900382-25900883(+) (9)	NA	Q9SZ52	"Pentatricopeptide repeat-containing protein At4g31850, chloroplastic"	AT4G31850.1	proton gradient regulation 3 	LOC_Os10g28600.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g138450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66790.1.S1_at	A	A1TS	POPTR_0003s09900	POPTR_0003s09900 (11)	scaffold_3:11064006-11064506(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G32090.1	early-responsive to dehydration stress protein (ERD4) 	LOC_Os10g42820.1	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g027680.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.66805.1.S1_at	A	A1TS	POPTR_0006s13110	POPTR_0006s13110 (9)	scaffold_6:10328951-10330510(-) (9)	POPTR_0016s09020 (6)	Q2UM42	Probable catabolite repression protein creC	AT3G53390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g07450.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g121380.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66809.1.S1_s_at	A	A1TS	POPTR_0008s19790	POPTR_0008s19790 (11)	scaffold_8:13654486-13655185(+) (11)	NA	Q8VXV4	Chaperone protein dnaJ 16	AT1G24120.1	ARG1-like 1 	LOC_Os02g50760.2	"heat shock protein DnaJ, putative, expressed"	Medtr5g036860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.66810.1.S1_at	A	A1TS	POPTR_0001s30590	POPTR_0001s30590 (9)	scaffold_1:29077038-29077376(-) (9)	NA	Q39266	Zinc finger protein 7	AT1G24625.1	zinc finger protein 7 	LOC_Os12g39220.1	"ZOS12-08 - C2H2 zinc finger protein, expressed"	Medtr3g087170.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66816.2.S1_a_at	A	A1TS	POPTR_0015s09170	POPTR_0015s09170 (11)	scaffold_15:10457053-10457795(-) (11)	NA	Q9CWP6	Motile sperm domain-containing protein 2	AT5G63060.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g21630.1	"SEC14 cytosolic factor family protein, putative, expressed"	CU651566_8.2	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal CU651566.9 36825-34547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66821.1.S1_at	A	A1TS	POPTR_0014s14780	POPTR_0014s14780 (11)	scaffold_14:10859767-10860035(+) (11)	NA	Q9ZW82	Pirin-like protein At2g43120	AT2G43120.1	RmlC-like cupins superfamily protein 	LOC_Os03g62790.1	"pirin, putative, expressed"	Medtr5g101700.1	"Pirin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6684.2.S1_s_at	A	A1TS	POPTR_0004s21040	POPTR_0004s21040 (11)	scaffold_4:20340636-20341195(+) (11)	NA	Q7FAE1	Momilactone A synthase	AT3G26770.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.6684.3.A1_a_at	A	A1TS	POPTR_0008s16030	POPTR_0008s16030 (11)	scaffold_8:10691422-10692176(-) (11)	NA	Q8R146	Acylamino-acid-releasing enzyme	AT4G14570.1	acylaminoacyl-peptidase-related 	LOC_Os10g28020.1	"OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g045450.2	"Peptidase S9, serine active site "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.66857.1.S1_at	A	A1TS	POPTR_0001s36200	POPTR_0001s36200 (11)	scaffold_1:34712043-34712409(+) (11)	NA	Q6P298	Cytosolic Fe-S cluster assembly factor nubp1	AT5G50960.1	nucleotide binding protein 35 	LOC_Os02g38900.1	"cytosolic Fe-S cluster assembling factor NBP35, putative, expressed"	Medtr1g020220.1	Mrp 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
PtpAffx.6689.1.A1_at	A	A1TS	POPTR_0006s05630	POPTR_0006s05630 (11)	scaffold_6:3982686-3983182(+) (11)	NA	Q9C9N5	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830	AT3G57830.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g39590.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr7g076330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.66890.1.S1_s_at	A	A1TS	POPTR_0010s05300	POPTR_0010s05300 (11)	scaffold_10:6766437-6767277(+) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.66898.1.S1_at	A	A1TS	POPTR_0009s07980	POPTR_0009s07980 (10)	scaffold_9:7391755-7392050(+) (10)	NA	Q642R9	Rab3 GTPase-activating protein catalytic subunit	AT5G58510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g18440.1	expressed protein	Medtr5g100640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6691.1.S1_a_at	A	A2TS	POPTR_0001s31240	POPTR_0009s10300 (11)//POPTR_0001s31240 (11)	scaffold_1:29570479-29570737(+) (11)//scaffold_9:8870834-8871090(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT4G34040.1	RING/U-box superfamily protein 	LOC_Os04g55510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130170.2	"Site-specific DNA-methyltransferase (cytosine-N4-specific); Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6691.1.S1_at	A	A1TS	POPTR_0001s31240	POPTR_0001s31240 (11)	scaffold_1:29570723-29571025(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT4G34040.1	RING/U-box superfamily protein 	LOC_Os04g55510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130170.2	"Site-specific DNA-methyltransferase (cytosine-N4-specific); Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6691.2.S1_at	A	A1TS	POPTR_0009s10300	POPTR_0009s10300 (10)	scaffold_9:8870753-8871422(+) (10)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT2G15530.3	RING/U-box superfamily protein 	LOC_Os04g55510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130170.2	"Site-specific DNA-methyltransferase (cytosine-N4-specific); Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66913.1.A1_at	A	A1TS	POPTR_0002s24630	POPTR_0002s24630 (11)	scaffold_2:21945258-21945582(-) (11)	NA	Q6PD26	GPI transamidase component PIG-S	AT3G07180.1	GPI transamidase component PIG-S-related 	LOC_Os01g67960.1	"GPI transamidase component PIG-S-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66914.1.S1_s_at	A	A1TS	POPTR_0011s06740	POPTR_0011s06740 (11)	scaffold_11:7405515-7406959(-) (11)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.6692.2.A1_at	A	A1TS	POPTR_0872s00200	POPTR_0872s00200 (11)	scaffold_872:979-1656(-) (11)	NA	NA	NA	AT5G03380.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g30450.1	"heavy-metal-associated domain-containing protein, putative, expressed"	AC235487_8.1	Heavy metal transport/detoxification protein AC235487.1 51831-53181 H EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.6692.5.A1_a_at	A	A1TS	POPTR_0006s12660	POPTR_0006s12660 (11)	scaffold_6:9801583-9801620(+) (11)	NA	NA	NA	AT5G03380.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g05750.1	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr7g123850.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.6692.6.S1_at	A	A1TS	POPTR_0006s12660	POPTR_0006s12660 (10)	scaffold_6:9799899-9799934(+) (10)//scaffold_872:2730-2765(-) (9)	NA	NA	NA	AT5G03380.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g05750.1	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr7g123850.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.6692.7.S1_s_at	A	A1TS	POPTR_0014s02100	POPTR_0014s02100 (11)	scaffold_14:1829359-1830406(-) (11)	NA	NA	NA	AT2G38185.2	RING/U-box superfamily protein 	LOC_Os06g14200.1	"zinc finger, C3HC4 type domain containing protein"	Medtr1g023680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6692.8.S1_at	A	A1TS	POPTR_0009s13600	POPTR_0009s13600 (9)	scaffold_9:10802158-10803033(+) (9)	NA	NA	NA	AT2G17840.1	Senescence/dehydration-associated protein-related 	LOC_Os06g50330.1	"senescence-associated protein, putative, expressed"	Medtr5g022360.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6692.9.A1_a_at	A	A1TS	POPTR_0016s06010	POPTR_0016s06010 (11)	scaffold_16:3931221-3931381(+) (11)	NA	Q55DB6	Activator of 90 kDa heat shock protein ATPase homolog	AT3G12050.1	Aha1 domain-containing protein 	LOC_Os08g36150.1	"activator of 90 kDa heat shock protein ATPase homolog, putative, expressed"	Medtr7g112200.1	"Activator of Hsp90 ATPase, N-terminal "	GO:0006950|response to stress	GO:0051087|chaperone binding||GO:0001671|ATPase activator activity	GO:0005737|cytoplasm
PtpAffx.66923.1.S1_at	A	A1TS	POPTR_0006s23420	POPTR_0006s23420 (11)	scaffold_6:22148071-22148701(+) (11)	NA	Q8RXD3	E3 ubiquitin-protein ligase AIP2	AT5G20910.1	RING/U-box superfamily protein 	LOC_Os09g26400.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g143590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6693.1.S1_s_at	A	A1TS	POPTR_0012s09760	POPTR_0012s09760 (11)	scaffold_12:10698322-10698918(+) (11)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT5G63410.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g20360.2	expressed protein	Medtr3g117370.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.6695.1.S1_at	A	A1TS	POPTR_0007s10900	POPTR_0007s10900 (11)	scaffold_7:11107801-11108243(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.6696.2.S1_s_at	A	A3TS	POPTR_0013s07240	POPTR_0013s07240 (11)//POPTR_0013s07220 (10)//POPTR_0013s07230 (10)	scaffold_13:5927304-5927534(-) (10)//scaffold_13:5940471-5940696(-) (10)//scaffold_13:6003416-6003646(-) (11)//scaffold_2079:3821-4046(+) (10)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140340.1	N-6 Adenine-specific DNA methylase; Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.6696.4.S1_at	A	A2TS	POPTR_0013s07220	POPTR_0013s07220 (9)//POPTR_0013s07230 (9)	scaffold_13:5926554-5926590(-) (9)//scaffold_13:5939723-5939759(-) (9)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.66991.1.A1_s_at	A	A1TS	POPTR_0014s06740	POPTR_0014s06740 (11)	scaffold_14:5098240-5098476(-) (11)	NA	Q9LZX4	Fasciclin-like arabinogalactan protein 10	AT3G60900.1	FASCICLIN-like arabinogalactan-protein 10 	LOC_Os04g48490.1	"fasciclin-like arabinogalactan protein, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6700.1.S1_s_at	A	A1TS	POPTR_0003s07650	POPTR_0003s07650 (11)	scaffold_3:9176299-9177042(-) (11)	POPTR_0001s15570 (6)	NA	NA	AT5G47420.1	Tryptophan RNA-binding attenuator protein-like 	LOC_Os03g53600.1	"HTH DNA-binding protein, putative, expressed"	Medtr8g105520.1	Protein of unknown function DUF124 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6700.2.S1_s_at	A	A1TS	POPTR_0003s07650	POPTR_0003s07650 (11)	scaffold_3:9178368-9180758(-) (11)	NA	NA	NA	AT5G47420.1	Tryptophan RNA-binding attenuator protein-like 	LOC_Os03g53600.1	"HTH DNA-binding protein, putative, expressed"	Medtr8g105520.1	Protein of unknown function DUF124 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67052.1.A1_at	A	A1MS	POPTR_0001s25640	POPTR_0001s25640 (11)	scaffold_1:24707770-24708229(+) (11)	NA	NA	NA	AT1G07310.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67064.1.S1_at	A	A1TS	POPTR_0011s11660	POPTR_0011s11660 (10)	scaffold_11:14448390-14449039(+) (10)	NA	NA	NA	AT5G53930.1	unknown protein; LOCATED IN: chloroplast; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os07g01720.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67096.1.S1_s_at	A	A1TS	POPTR_0003s03680	POPTR_0003s03680 (11)	scaffold_3:4330309-4332220(-) (11)	NA	NA	NA	AT2G02410.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298); Has 1151 Blast hits to 1151 proteins in 597 species: Archae - 0; Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os03g62610.1	"RNA-binding protein containing a PIN domain, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67116.1.S1_s_at	A	A1TS	POPTR_0001s03160	POPTR_0001s03160 (10)	scaffold_1:2499593-2500587(-) (10)	NA	O04979	"Lon protease homolog 2, peroxisomal"	AT5G47040.1	lon protease 2 	LOC_Os09g36300.1	"OsLonP4 - Putative Lon protease homologue, expressed"	Medtr5g014000.1	"AAA ATPase, central region "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004176|ATP-dependent peptidase activity||GO:0004252|serine-type endopeptidase activity||GO:0005524|ATP binding	NA
PtpAffx.6714.1.S1_at	A	A1MS	POPTR_0007s00880	POPTR_0007s00880 (9)	scaffold_7:449533-450326(+) (10)	NA	Q6YXY2	Probable histone acetyltransferase HAC-like 1	AT1G05690.1	BTB and TAZ domain protein 3 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr5g015750.1	"Zinc finger, TAZ-type; BTB/POZ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.67145.1.S1_s_at	A	A1TS	POPTR_0009s04660	POPTR_0009s04660 (11)	scaffold_9:4946910-4946944(-) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT5G58940.1	calmodulin-binding receptor-like cytoplasmic kinase 1 	LOC_Os01g63280.2	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g078150.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.67146.1.S1_s_at	A	A1TS	POPTR_0009s03880	POPTR_0009s03880 (11)	scaffold_9:4442163-4442766(-) (11)	NA	Q8VZI8	"ATP-dependent zinc metalloprotease FTSH 10, mitochondrial"	AT1G07510.1	FTSH protease 10 	LOC_Os05g38400.1	"OsFtsH8  FtsH protease, homologue of AtFtsH3/10, expressed"	Medtr4g084650.1	"AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.67207.1.S1_at	A	A1TS	POPTR_0005s14630	POPTR_0005s14630 (11)	scaffold_5:11650353-11650769(+) (11)	NA	A0JMW6	Transmembrane protein 214-A	AT1G70770.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67228.1.S1_s_at	A	A1TS	POPTR_0014s16580	POPTR_0014s16580 (11)	scaffold_14:12668122-12668282(+) (11)	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os07g41580.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr5g103350.1	"Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone "	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.67281.1.A1_at	A	A1TS	POPTR_0015s09190	POPTR_0015s09190 (11)	scaffold_15:10469824-10470080(+) (11)	NA	NA	NA	AT5G50150.1	Protein of Unknown Function (DUF239) 	LOC_Os06g28000.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr7g143030.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6733.1.S1_s_at	A	A1TS	POPTR_0001s34950	POPTR_0001s34950 (11)	scaffold_1:33208056-33208192(+) (11)	NA	P16016	"Carbonic anhydrase, chloroplastic"	AT3G01500.1	carbonic anhydrase 1 	LOC_Os01g45274.1	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr6g006530.2	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.6733.2.A1_s_at	A	A1TS	POPTR_0001s34950	POPTR_0001s34950 (11)	scaffold_1:33207578-33207958(+) (11)	NA	P16016	"Carbonic anhydrase, chloroplastic"	AT3G01500.1	carbonic anhydrase 1 	LOC_Os01g45274.1	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr6g006530.2	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.6733.3.S1_s_at	A	A1TS	POPTR_0003s11300	POPTR_0003s11300 (11)	scaffold_3:12154428-12154856(-) (11)	NA	P34811	"Elongation factor G, chloroplastic"	AT1G62750.1	Translation elongation factor EFG/EF2 protein 	LOC_Os04g45490.1	"elongation factor, putative, expressed"	Medtr8g106340.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.6733.4.S1_s_at	A	A1TS	POPTR_0001s34950	POPTR_0001s34950 (11)	scaffold_1:33205466-33206567(+) (11)	NA	P16016	"Carbonic anhydrase, chloroplastic"	AT3G01500.1	carbonic anhydrase 1 	LOC_Os01g45274.1	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr6g006530.2	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.67330.1.S1_s_at	A	A1TS	POPTR_0002s09110	POPTR_0002s09110 (11)	scaffold_2:6452314-6453442(+) (11)	NA	Q9LZM3	Phosphopantothenate--cysteine ligase 2	AT1G12350.1	4-phospho-panto-thenoylcysteine synthetase 	LOC_Os02g36550.1	"phosphopantothenate--cysteine ligase, putative, expressed"	Medtr8g116490.1	"DNA/pantothenate metabolism flavoprotein, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67343.1.S1_at	A	A1TS	POPTR_0012s04320	POPTR_0012s04320 (10)	scaffold_12:3535527-3536076(+) (10)	NA	P93008	DEAD-box ATP-dependent RNA helicase 21	AT2G33730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g50090.4	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	AC233669_14.1	"Helicase, C-terminal; ; AC233669.2 54226-56692 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.67346.1.S1_at	A	A1TS	POPTR_0001s47030	POPTR_0001s47030 (10)	scaffold_1:47353394-47353922(-) (11)	NA	O81767	Pentatricopeptide repeat-containing protein At4g33990	AT4G33990.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g27880.1	"tetratricopeptide-like helical, putative"	Medtr7g106280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67347.1.S1_at	A	A1TS	POPTR_0005s17310	POPTR_0005s17310 (9)	scaffold_5:14616038-14616318(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67350.1.S1_s_at	A	A1TS	POPTR_0002s11230	POPTR_0002s11230 (11)	scaffold_2:8298350-8298432(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT5G49660.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os12g43660.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.67377.1.S1_s_at	A	A2TS	POPTR_0017s00610	POPTR_0017s00610 (11)//POPTR_0017s04370 (9)	scaffold_17:334086-334910(-) (11)//scaffold_17:3377588-3378113(+) (10)	NA	P84786	Ribosome-inactivating protein charybdin	NA	NA	LOC_Os01g06740.1	"ribosome inactivating protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0017148|negative regulation of translation	GO:0030598|rRNA N-glycosylase activity	NA
PtpAffx.67381.1.S1_at	A	A1TS	POPTR_0001s10670	POPTR_0001s10670 (11)	scaffold_1:8299409-8300063(+) (11)	NA	Q8LAH8	"Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial"	AT4G23900.1	Nucleoside diphosphate kinase family protein 	LOC_Os05g51700.1	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.67394.1.S1_at	A	A1TS	POPTR_0006s27220	POPTR_0006s27220 (11)	scaffold_6:25203355-25203748(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT2G45180.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g01320.1	"LTPL116 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr1g014100.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67395.1.S1_at	A	A1TS	POPTR_0015s10040	POPTR_0015s10040 (11)	scaffold_15:11094689-11094834(+) (11)	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT3G48430.1	relative of early flowering 6 	LOC_Os01g67970.1	"ZOS1-20 - C2H2 zinc finger protein, expressed"	AC235753_2.1	"Transcription factor jumonji, jmjC; Zinc finger, C2H2-type; ; AC235753.1 4557-10832 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.67405.1.S1_at	A	A1TS	POPTR_0015s03380	POPTR_0015s03380 (9)	scaffold_15:2893628-2895685(+) (9)	NA	Q8IWF6	Protein FAM116A	AT1G73930.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g15390.1	"GA17271-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67424.2.A1_at	A	A1MS	POPTR_0003s15250	POPTR_0003s15250 (11)	scaffold_3:15108474-15108980(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67425.1.S1_at	A	A1TS	POPTR_0008s03270	POPTR_0008s03270 (9)	scaffold_8:1728210-1728398(-) (9)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT5G04290.1	kow domain-containing transcription factor 1 	LOC_Os05g43060.1	"retrotransposon, putative, centromere-specific, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67431.1.S1_at	A	A1TS	POPTR_0019s09010	POPTR_0019s09010 (11)	scaffold_19:10603536-10603968(-) (11)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os05g40200.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr5g083430.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.67436.1.S1_s_at	A	A1TS	POPTR_0010s10000	POPTR_0010s10000 (11)	scaffold_10:10593530-10594131(-) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67455.1.S1_at	A	A1TS	POPTR_0009s08540	POPTR_0009s08540 (10)	scaffold_9:7785807-7786336(+) (10)	NA	Q9LJM4	Receptor-like protein kinase HAIKU2	AT1G09970.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os12g43640.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.67460.1.S1_s_at	A	A1TS	POPTR_0002s18860	POPTR_0002s18860 (11)	scaffold_2:14765008-14765210(-) (11)	NA	O80725	ABC transporter B family member 4	AT2G47000.1	ATP binding cassette subfamily B4 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.67467.1.S1_at	A	A1TS	POPTR_0008s19610	POPTR_0008s19610 (11)	scaffold_8:13508307-13508646(-) (11)	NA	Q869R9	Myb-like protein J	AT1G70000.2	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr5g038100.1	"Zinc finger, CCHC-type; Homeodomain-related "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.67469.1.S1_s_at	A	A1TS	POPTR_0008s11380	POPTR_0008s11380 (11)	scaffold_8:7219964-7220112(-) (11)	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT1G13220.2	nuclear matrix constituent protein-related 	LOC_Os02g48010.1	"nuclear matrix constituent protein 1-like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67471.1.S1_at	A	A1TS	POPTR_0014s19060	POPTR_0014s19060 (11)	scaffold_14:16816601-16818928(+) (11)	NA	Q5R6J3	Solute carrier family 35 member F5	AT3G07080.1	EamA-like transporter family 	LOC_Os06g46820.1	"solute carrier family 35 member F5, putative, expressed"	Medtr7g064590.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.67491.1.S1_at	A	A1TS	POPTR_0009s01020	POPTR_0009s01020 (11)	scaffold_9:1134451-1134874(-) (11)	NA	Q42430	Zinc finger protein 1	AT2G28200.1	C2H2-type zinc finger family protein 	LOC_Os02g57790.1	ZOS2-19 - C2H2 zinc finger protein	Medtr4g076150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.675.1.S1_at	A	A1TS	POPTR_0014s11040	POPTR_0014s11040 (11)	scaffold_14:8228552-8228672(-) (11)	NA	P62981	Ubiquitin-40S ribosomal protein S27a	AT2G47110.2	ubiquitin 6 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.675.1.S1_x_at	A	A1TS	POPTR_0014s11040	POPTR_0014s11040 (11)	scaffold_14:8228552-8228718(-) (11)	NA	P62981	Ubiquitin-40S ribosomal protein S27a	AT2G47110.2	ubiquitin 6 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.675.10.S1_s_at	A	A1TS	POPTR_0001s06260	POPTR_0001s06260 (11)	scaffold_1:4826138-4826507(-) (11)	NA	P62981	Ubiquitin-40S ribosomal protein S27a	AT2G47110.2	ubiquitin 6 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.675.2.S1_at	A	A1TS	POPTR_0002s19070	POPTR_0002s19070 (11)	scaffold_2:14982456-14982750(-) (11)	NA	P62981	Ubiquitin-40S ribosomal protein S27a	AT2G47110.2	ubiquitin 6 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.675.4.S1_at	A	A1TS	POPTR_0015s12320	POPTR_0015s12320 (11)	scaffold_15:12611906-12611979(-) (11)	NA	P62981	Ubiquitin-40S ribosomal protein S27a	AT2G47110.2	ubiquitin 6 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.675.5.S1_at	A	A1TS	POPTR_0013s02430	POPTR_0013s02430 (11)	scaffold_13:1448887-1449529(+) (11)	NA	Q54TS4	Protein YIPF1 homolog	AT5G27490.1	Integral membrane Yip1 family protein 	LOC_Os01g42480.1	"Yip1 domain containing protein, expressed"	Medtr7g139390.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.675.6.S1_at	A	A1TS	POPTR_0012s11550	POPTR_0012s11550 (11)	scaffold_12:11925312-11925346(-) (11)	NA	P62981	Ubiquitin-40S ribosomal protein S27a	AT2G47110.2	ubiquitin 6 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.675.9.S1_s_at	A	A1TS	POPTR_0004s04670	POPTR_0004s04670 (11)	scaffold_4:3416680-3416808(-) (11)	NA	Q05349	Auxin-repressed 12.5 kDa protein	AT1G28330.1	dormancy-associated protein-like 1 	LOC_Os11g44810.1	"auxin-repressed protein, putative, expressed"	Medtr2g017720.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67513.1.S1_at	A	A1TS	POPTR_0007s06940	POPTR_0007s06940 (11)	scaffold_7:5299709-5300153(-) (11)	NA	Q8L899	Systemin receptor SR160	AT4G39400.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os01g52050.1	"systemin receptor SR160 precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.67538.1.S1_at	A	A1TS	POPTR_0001s45800	POPTR_0001s45800 (9)	scaffold_1:46311023-46311571(-) (11)	NA	Q9FGJ6	RING-H2 finger protein ATL79	AT5G47610.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr3g144110.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67540.1.A1_s_at	A	A1TS	POPTR_0011s05910	POPTR_0011s05910 (11)	scaffold_11:5954874-5955082(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G54010.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g26950.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr2g018360.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67551.1.S1_at	A	A1TS	POPTR_0005s07720	POPTR_0005s07720 (11)	scaffold_5:5285373-5286437(+) (11)	NA	Q43011	Asparagine synthetase [glutamine-hydrolyzing]	AT5G10240.1	asparagine synthetase 3 	LOC_Os06g15420.1	"asparagine synthetase, putative, expressed"	Medtr3g101710.1	Asparagine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006529|asparagine biosynthetic process	GO:0004066|asparagine synthase (glutamine-hydrolyzing) activity	NA
PtpAffx.6757.1.S1_at	A	A1TS	POPTR_0014s00890	POPTR_0014s00890 (11)	scaffold_14:809718-811916(-) (11)	NA	O81007	Putative glycosyltransferase 7	AT2G22900.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g49140.1	"glycosyltransferase, putative, expressed"	Medtr5g015410.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
PtpAffx.67591.1.A1_at	A	A1MS	POPTR_0009s04530	POPTR_0009s04530 (10)	scaffold_9:4864220-4864424(+) (10)	NA	Q304B9	Neutral ceramidase	AT5G58980.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67592.1.A1_at	A	A1TS	POPTR_0013s11280	POPTR_0013s11280 (11)	scaffold_13:11938522-11939274(-) (11)	NA	Q4Z8K6	Ran-binding proteins 9/10 homolog	AT1G35470.2	SPla/RYanodine receptor (SPRY) domain-containing protein 	LOC_Os02g35070.1	"SPRY-domain containing protein, putative, expressed"	Medtr4g033600.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY; Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67603.1.A1_at	A	A1TS	POPTR_0001s25600	POPTR_0001s25600 (11)	scaffold_1:24673952-24674494(-) (11)	NA	Q9SBA7	Sugar transport protein 8	AT5G26250.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.67618.1.S1_at	A	A1TS	POPTR_0001s36940	POPTR_0001s36940 (11)	scaffold_1:35746247-35746779(+) (11)	NA	Q5PNS0	PHD finger protein At3g20280	AT1G50620.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g20410.1	"BAH domain containing protein, expressed"	Medtr5g101370.1	"Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	NA
PtpAffx.67621.1.S1_at	A	A1TS	POPTR_0008s09750	POPTR_0008s09750 (9)	scaffold_8:6025497-6026196(-) (9)	NA	Q94JW8	Squamosa promoter-binding-like protein 6	AT1G69170.1	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os09g32944.1	"OsSPL18 - SBP-box gene family member, expressed"	Medtr5g048960.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.67622.1.A1_at	A	A1MS	POPTR_0016s06930	POPTR_0016s06930 (9)	scaffold_16:4713831-4714358(-) (9)	NA	Q9Y2L5	Trafficking protein particle complex subunit 8	AT5G16280.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g57300.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67630.1.A1_at	A	A1TS	POPTR_0010s14220	POPTR_0010s14220 (11)	scaffold_10:13885038-13888162(-) (11)	NA	Q8K4H1	Probable arylformamidase	AT1G26120.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g49440.1	"serine esterase, putative, expressed"	AC233657_30.1	"Carboxylesterase, type B AC233657.1 159050-155204 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67638.1.S1_at	A	A1TS	POPTR_0006s12110	POPTR_0006s12110 (10)	scaffold_6:9261729-9262238(+) (11)	NA	P94575	Probable allantoin permease	AT5G03555.1	"permease, cytosine/purines, uracil, thiamine, allantoin family protein "	LOC_Os02g44680.1	"allantoin permease, putative, expressed"	Medtr1g074200.1	"Permease for cytosine/purines, uracil, thiamine, allantoin "	"GO:0015931|""nucleobase, nucleoside, nucleotide and nucleic acid transport"""	GO:0015205|nucleobase transmembrane transporter activity	GO:0016020|membrane
PtpAffx.67679.1.A1_a_at	A	A3TS	POPTR_0006s03460	POPTR_0006s03470 (9)//POPTR_0006s03460 (9)//POPTR_0016s03410 (9)	scaffold_16:1769823-1769855(-) (9)//scaffold_6:2234058-2234090(+) (9)//scaffold_6:2243179-2243211(+) (9)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G66120.1	AMP-dependent synthetase and ligase family protein 	LOC_Os09g38350.1	"AMP-binding domain containing protein, expressed"	Medtr3g086630.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.67679.1.A1_at	A	A1TS	POPTR_0016s03410	POPTR_0016s03410 (11)	scaffold_16:1769335-1769670(-) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G66120.1	AMP-dependent synthetase and ligase family protein 	LOC_Os09g38350.1	"AMP-binding domain containing protein, expressed"	Medtr3g086630.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.67679.3.S1_a_at	A	A1TS	POPTR_0006s03470	POPTR_0006s03470 (11)	scaffold_6:2243343-2243613(+) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G66120.1	AMP-dependent synthetase and ligase family protein 	LOC_Os09g38350.1	"AMP-binding domain containing protein, expressed"	Medtr3g086630.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.67684.1.S1_at	A	A1TS	POPTR_0006s09260	POPTR_0006s09260 (10)	scaffold_6:6813758-6815359(-) (10)	NA	Q8LG95	Pentatricopeptide repeat-containing protein At4g21190	AT1G04590.1	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os12g02950.1	"EMB2748, putative, expressed"	Medtr5g012280.1	"pentatricopeptide repeat-containing protein {Ara, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.677.1.A1_a_at	A	A1TS	POPTR_0003s18540	POPTR_0003s18540 (11)	scaffold_3:17583740-17583803(-) (11)	NA	Q84L33	Putative DNA repair protein RAD23-1	AT1G79650.2	Rad23 UV excision repair protein family 	LOC_Os02g08300.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.677.2.S1_at	A	A1TS	POPTR_0001s07510	POPTR_0001s07510 (11)	scaffold_1:5644853-5645119(+) (11)	NA	Q84L33	Putative DNA repair protein RAD23-1	AT1G79650.2	Rad23 UV excision repair protein family 	LOC_Os02g08300.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.677.3.A1_at	A	A1MS	POPTR_0003s18540	POPTR_0003s18540 (11)	scaffold_3:17583898-17584019(-) (11)	NA	Q84L33	Putative DNA repair protein RAD23-1	AT1G79650.2	Rad23 UV excision repair protein family 	LOC_Os02g08300.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.67807.1.A1_at	A	A1TS	POPTR_0016s14200	POPTR_0016s14200 (10)	scaffold_16:13431211-13431718(-) (10)	NA	NA	NA	AT2G38500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g60800.1	expressed protein	Medtr7g079910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67810.1.A1_s_at	A	A1TS	POPTR_0016s12440	POPTR_0016s12440 (11)	scaffold_16:11794068-11794454(-) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235756_21.1	2OG-Fe(II) oxygenase AC235756.1 149509-155143 H EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.67814.1.A1_at	A	A1TS	POPTR_0012s05200	POPTR_0012s05200 (10)	scaffold_12:4736828-4737224(-) (10)	NA	Q9LK95	Transcription factor MYB21	AT1G68320.1	myb domain protein 62 	LOC_Os01g03720.1	"MYB family transcription factor, putative, expressed"	Medtr1g140720.1	Phosphoglycerate/bisphosphoglycerate mutase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67827.1.S1_at	A	A1TS	POPTR_0001s02270	POPTR_0001s02270 (11)	scaffold_1:1723117-1723603(-) (11)	NA	Q5M9F1	RNA-binding protein 34	AT5G46840.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g63730.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g029780.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.67862.1.A1_at	A	A1TS	POPTR_0004s14580	POPTR_0004s14580 (9)	scaffold_4:15163544-15163918(-) (9)	NA	Q68FJ8	TOM1-like protein 2	AT5G63640.1	ENTH/VHS/GAT family protein 	LOC_Os08g01740.1	"VHS and GAT domain containing protein, expressed"	Medtr4g144470.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.67896.1.A1_at	A	A1TS	POPTR_0009s01330	POPTR_0009s01330 (10)	scaffold_9:1601129-1602430(-) (10)	NA	Q58CR4	Dolichol kinase	AT3G45040.1	phosphatidate cytidylyltransferase family protein 	LOC_Os02g05320.1	"phosphatidate cytidylyltransferase family protein, putative, expressed"	AC235487_14.1	Phosphatidate cytidylyltransferase AC235487.1 82252-74788 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67898.1.A1_at	A	A1TS	POPTR_0012s14160	POPTR_0012s14160 (11)	scaffold_12:14153232-14153652(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT4G21120.1	amino acid transporter 1 	LOC_Os12g41890.1	"amino acid permease family protein, putative"	Medtr4g137890.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.679.1.S1_at	A	A1TS	POPTR_0018s07400	POPTR_0018s07400 (11)	scaffold_18:7702747-7702876(+) (11)	NA	Q6QPJ6	"Peroxiredoxin Q, chloroplastic"	AT3G26060.1	Thioredoxin superfamily protein 	LOC_Os06g09610.2	"peroxiredoxin, putative, expressed"	Medtr8g133010.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.679.1.S1_s_at	A	A1TS	POPTR_0018s07400	POPTR_0018s07400 (11)	scaffold_18:7701672-7702893(+) (11)	NA	Q6QPJ6	"Peroxiredoxin Q, chloroplastic"	AT3G26060.1	Thioredoxin superfamily protein 	LOC_Os06g09610.2	"peroxiredoxin, putative, expressed"	Medtr8g133010.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.679.2.S1_at	A	A1MS	POPTR_0006s13980	POPTR_0006s13980 (11)	scaffold_6:11220044-11220228(+) (11)	NA	Q6QPJ6	"Peroxiredoxin Q, chloroplastic"	AT3G26060.1	Thioredoxin superfamily protein 	LOC_Os06g09610.2	"peroxiredoxin, putative, expressed"	Medtr8g133010.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.6791.1.A1_at	A	A1TS	POPTR_0001s42770	POPTR_0001s42770 (11)	scaffold_1:42782489-42782758(+) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67931.1.A1_at	A	A1TS	POPTR_0009s02220	POPTR_0009s02220 (11)	scaffold_9:2950969-2953973(+) (11)	NA	Q9C5J8	"Outer envelope protein of 80 kDa, chloroplastic"	AT3G44160.1	Outer membrane OMP85 family protein 	LOC_Os05g43470.1	"outer membrane protein, OMP85 family, putative, expressed"	Medtr2g104800.1	Bacterial surface antigen (D15) 	NA	NA	GO:0019867|outer membrane
PtpAffx.67952.1.A1_at	A	A1TS	POPTR_0017s02470	POPTR_0017s02470 (11)	scaffold_17:1781645-1782042(-) (11)	NA	Q5PNY6	U-box domain-containing protein 21	AT5G37490.1	ARM repeat superfamily protein 	LOC_Os02g50460.1	"immediate-early fungal elicitor protein CMPG1, putative, expressed"	Medtr5g085300.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.67985.1.S1_at	A	A1TS	POPTR_0001s24740	POPTR_0001s24740 (11)	scaffold_1:23983232-23983735(-) (11)	NA	P13917	Basic 7S globulin	AT1G03230.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67985.2.S1_a_at	A	A7TS	POPTR_0001s24740	POPTR_0382s00210 (11)//POPTR_0001s24740 (11)//POPTR_0019s09300 (11)//POPTR_0019s09280 (11)//POPTR_0019s09320 (11)//POPTR_0382s00200 (10)//POPTR_0019s09310 (10)	scaffold_1:23984002-23984474(-) (11)//scaffold_19:10863162-10863634(+) (11)//scaffold_19:10868554-10868591(+) (10)//scaffold_19:10881919-10882391(+) (11)//scaffold_19:10895667-10895704(+) (10)//scaffold_19:10908591-10909063(+) (11)//scaffold_382:2015-2052(+) (10)//scaffold_382:14231-14703(+) (11)	POPTR_0019s09270 (7)	P13917	Basic 7S globulin	AT1G03230.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67985.2.S1_at	A	A5TS	POPTR_0019s09300	POPTR_0019s09300 (11)//POPTR_0382s00210 (9)//POPTR_0382s00200 (9)//POPTR_0019s09310 (9)//POPTR_0019s09320 (9)	scaffold_19:10863122-10868282(+) (9)//scaffold_19:10881879-10882331(+) (11)//scaffold_19:10895192-10895644(+) (9)//scaffold_19:10908551-10909003(+) (9)//scaffold_382:1540-1992(+) (9)//scaffold_382:14191-14643(+) (9)	POPTR_0019s09280 (8)	Q8RVH5	Basic 7S globulin 2	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68024.1.S1_at	A	A1TS	POPTR_0003s09870	POPTR_0003s09870 (11)	scaffold_3:11054919-11055486(-) (11)	NA	NA	NA	AT1G32080.1	"membrane protein, putative "	LOC_Os10g42780.2	"lrgB-like family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6804.1.S1_at	A	A1TS	POPTR_0007s04000	POPTR_0007s04000 (9)	scaffold_7:2388062-2388433(+) (11)	NA	NA	NA	AT3G13275.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g104400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6808.1.S1_at	A	A1TS	POPTR_0012s03830	POPTR_0012s03830 (11)	scaffold_12:3057136-3059374(+) (11)	NA	Q568K5	"N-alpha-acetyltransferase 40, NatD catalytic subunit"	AT1G18335.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os05g32180.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr6g076470.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.6809.1.S1_at	A	A1TS	POPTR_0006s25340	POPTR_0006s25340 (11)	scaffold_6:23729796-23734036(+) (11)	NA	P59082	Lachrymatory-factor synthase	AT4G32870.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os01g52570.1	"lachrymatory factor synthase, putative, expressed"	Medtr3g130360.1	"Lachrymatory-factor synthase precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68101.1.S1_s_at	A	A9TS	POPTR_0010s06930	POPTR_0010s07010 (11)//POPTR_0010s06970 (11)//POPTR_0010s07000 (11)//POPTR_0010s06990 (11)//POPTR_0010s06960 (11)//POPTR_0010s06930 (11)//POPTR_0010s06980 (11)//POPTR_0010s06940 (11)//POPTR_0010s06950 (11)	scaffold_10:8160138-8160179(-) (11)//scaffold_10:8165104-8165145(-) (11)//scaffold_10:8177956-8177997(-) (11)//scaffold_10:8185609-8185650(-) (11)//scaffold_10:8204463-8204504(-) (11)//scaffold_10:8213034-8213075(-) (11)//scaffold_10:8230628-8230669(-) (11)//scaffold_10:8237975-8238016(-) (11)//scaffold_10:8258661-8258702(-) (11)	NA	O80763	Probable nucleoredoxin 1	AT1G60420.1	DC1 domain-containing protein 	LOC_Os03g29190.2	"PDI, putative, expressed"	Medtr3g133070.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin domain 2; C1-like; Thioredoxin fold "	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.68118.1.S1_at	A	A1TS	POPTR_0005s21670	POPTR_0005s21670 (11)	scaffold_5:20772233-20772927(+) (11)	NA	Q2KI24	Methenyltetrahydrofolate synthase domain-containing protein	AT1G76730.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os12g07020.1	"5-formyltetrahydrofolate cyclo-ligase, putative, expressed"	NA	NA	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0030272|5-formyltetrahydrofolate cyclo-ligase activity	NA
PtpAffx.68127.2.A1_a_at	A	A2TS	POPTR_0001s30830	POPTR_0009s09960 (11)//POPTR_0001s30830 (11)	scaffold_1:29272077-29272446(-) (11)//scaffold_9:8692424-8692801(-) (11)	NA	NA	NA	AT3G19490.1	sodium:hydrogen antiporter 1 	LOC_Os09g02214.1	"Citrate transporter protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68128.1.S1_s_at	A	A1TS	POPTR_0004s19420	POPTR_0004s19420 (11)	scaffold_4:19263529-19263765(+) (11)	NA	O23006	LysM domain-containing GPI-anchored protein 2	AT2G17120.1	lysm domain GPI-anchored protein 2 precursor 	LOC_Os09g37600.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	AC235671_7.1	Peptidoglycan-binding LysM AC235671.2 31615-27432 E EGN_Mt090430 200	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.68146.1.S1_at	A	A1TS	POPTR_0002s15960	POPTR_0002s15960 (10)	scaffold_2:11898698-11899207(-) (11)	NA	NA	NA	AT2G45850.2	AT hook motif DNA-binding family protein 	LOC_Os02g57820.1	"AT hook motif domain containing protein, expressed"	Medtr7g084950.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
PtpAffx.6815.1.A1_at	A	A1TS	POPTR_0003s08080	POPTR_0003s08080 (11)	scaffold_3:9543188-9543570(+) (11)	NA	Q8W4H1	GATA transcription factor 26	AT4G17570.1	GATA transcription factor 26 	LOC_Os04g46020.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g013520.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.68160.1.S1_at	A	A1TS	POPTR_0014s13840	POPTR_0014s13840 (10)	scaffold_14:10120561-10121063(+) (10)	NA	Q84K11	Serine/threonine-protein phosphatase 5	AT2G42810.2	protein phosphatase 5.2 	LOC_Os05g11550.1	"serine/threonine protein phosphatase 5, putative, expressed"	Medtr2g121350.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0004722|protein serine/threonine phosphatase activity||GO:0046872|metal ion binding	NA
PtpAffx.68160.2.S1_a_at	A	A1TS	POPTR_0014s13840	POPTR_0014s13840 (10)	scaffold_14:10110633-10111589(+) (10)	NA	Q84K11	Serine/threonine-protein phosphatase 5	AT2G42810.2	protein phosphatase 5.2 	LOC_Os05g11550.1	"serine/threonine protein phosphatase 5, putative, expressed"	Medtr2g121350.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0004722|protein serine/threonine phosphatase activity||GO:0046872|metal ion binding	NA
PtpAffx.68164.1.S1_at	A	A1TS	POPTR_0009s07500	POPTR_0009s07500 (9)	scaffold_9:6981509-6981574(+) (9)	NA	O95271	Tankyrase-1	AT5G12320.1	ankyrin repeat family protein 	LOC_Os07g46500.2	"ankyrin repeat domain containing protein, putative, expressed"	Medtr3g100680.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68164.1.S1_s_at	A	A1TS	POPTR_0009s07500	POPTR_0009s07500 (11)	scaffold_9:6979837-6981504(+) (11)	NA	O95271	Tankyrase-1	AT5G12320.1	ankyrin repeat family protein 	LOC_Os07g46500.2	"ankyrin repeat domain containing protein, putative, expressed"	Medtr3g100680.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68171.1.S1_at	A	A1TS	POPTR_0007s09660	POPTR_0007s09660 (11)	scaffold_7:9162038-9163480(-) (11)	NA	NA	NA	AT5G66180.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g21510.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr8g089610.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68171.2.S1_at	A	A1MS	POPTR_0007s09660	POPTR_0007s09660 (11)	scaffold_7:9161416-9161909(-) (11)	NA	NA	NA	AT5G66180.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g21510.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr8g089610.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68177.1.A1_s_at	A	A1TS	POPTR_0003s04600	POPTR_0003s04600 (11)	scaffold_3:5471444-5471954(+) (11)	NA	NA	NA	AT4G01590.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68177.2.A1_at	A	A1MS	POPTR_0003s04600	POPTR_0003s04600 (9)	scaffold_3:5471389-5471736(+) (9)	NA	NA	NA	AT4G01590.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68213.1.S1_s_at	A	A1TS	POPTR_0012s02330	POPTR_0012s02330 (11)	scaffold_12:1949241-1949916(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G49260.3	IQ-domain 21 	LOC_Os03g44610.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g123810.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68244.1.S1_at	A	A1TS	POPTR_0002s12010	POPTR_0002s12010 (11)	scaffold_2:8931477-8931983(+) (11)	NA	Q42430	Zinc finger protein 1	AT1G27730.1	salt tolerance zinc finger 	LOC_Os12g39400.1	"ZOS12-09 - C2H2 zinc finger protein, expressed"	Medtr1g023440.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.6826.4.S1_at	A	A2MA	POPTR_0010s25480	POPTR_0010s25480 (10)//POPTR_0387s00230 (9)	scaffold_10:21145687-21145990(-) (10)//scaffold_387:15801-16104(+) (9)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g48800.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117180.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68278.1.S1_s_at	A	A1TS	POPTR_0001s11210	POPTR_0001s11210 (11)	scaffold_1:8697470-8697906(+) (11)	NA	Q944Q0	Serine/threonine-protein kinase WNK8	AT5G41990.1	with no lysine (K) kinase 8 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr3g109240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.68287.1.S1_at	A	A1TS	POPTR_0013s05340	POPTR_0013s05340 (11)	scaffold_13:3819610-3819785(-) (11)	NA	O22349	Tubulin alpha-3 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.68303.1.S1_at	A	A1TS	POPTR_0011s11560	POPTR_0011s11560 (11)	scaffold_11:14307568-14309788(-) (11)	NA	Q8L493	"Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic"	AT5G57850.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os01g13690.2	"ligA, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.68357.1.S1_s_at	A	A1TS	POPTR_0007s11990	POPTR_0007s11990 (11)	scaffold_7:12330703-12331101(+) (11)	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.68387.1.S1_at	A	A1TS	POPTR_0010s05090	POPTR_0010s05090 (10)	scaffold_10:6499389-6499942(+) (10)	NA	Q6NKP9	AMSH-like ubiquitin thiolesterase 2	AT1G10600.1	associated molecule with the SH3 domain of STAM 2 	LOC_Os01g47262.1	"AMSH-like protease, putative, expressed"	Medtr5g035570.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68397.1.S1_at	A	A1TS	POPTR_0006s11330	POPTR_0006s11330 (11)	scaffold_6:8594890-8595444(+) (11)	NA	P85192	Unknown protein 1	NA	NA	LOC_Os11g02720.1	expressed protein	Medtr8g005080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68426.1.S1_at	A	A1TS	POPTR_0015s03520	POPTR_0015s03520 (10)	scaffold_15:3129596-3130023(-) (11)	NA	Q8LDR0	Dof zinc finger protein DOF5.4	AT5G60850.1	OBF binding protein 4 	LOC_Os02g49440.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr8g079210.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.68429.1.S1_a_at	A	A2TS	POPTR_0004s05920	POPTR_0004s05920 (11)//POPTR_0011s06990 (11)	scaffold_11:7716909-7717063(-) (11)//scaffold_4:4663573-4663727(+) (11)	NA	Q9LP56	Probable WRKY transcription factor 65	AT1G29280.1	WRKY DNA-binding protein 65 	LOC_Os01g54600.1	"OsWRKY13 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g135580.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.68429.1.S1_at	A	A1TS	POPTR_0004s05920	POPTR_0004s05920 (11)	scaffold_4:4663521-4663748(+) (11)	NA	Q9LP56	Probable WRKY transcription factor 65	AT1G29280.1	WRKY DNA-binding protein 65 	LOC_Os01g54600.1	"OsWRKY13 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g135580.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.68429.2.S1_at	A	A1TS	POPTR_0011s06990	POPTR_0011s06990 (10)	scaffold_11:7716585-7717073(-) (10)	NA	Q9LP56	Probable WRKY transcription factor 65	AT1G29280.1	WRKY DNA-binding protein 65 	LOC_Os01g54600.1	"OsWRKY13 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g135580.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.68465.1.S1_at	A	A1TS	POPTR_0011s02570	POPTR_0011s02570 (11)	scaffold_11:2489510-2490800(-) (11)	NA	NA	NA	AT1G17210.1	IAP-like protein 1 	LOC_Os03g57160.1	"zinc ion binding protein, putative, expressed"	Medtr2g077240.1	"Zinc finger, C3HC-like "	NA	GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.68482.1.A1_at	A	A1TS	POPTR_0010s09250	POPTR_0010s09250 (11)	scaffold_10:10107367-10107885(-) (11)	NA	NA	NA	AT3G22810.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os03g43510.1	expressed protein	Medtr1g083880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68488.1.A1_at	A	A2TS	POPTR_0001s29050	POPTR_0001s29090 (11)//POPTR_0001s29050 (11)	scaffold_1:27758600-27766117(-) (11)//scaffold_1:27787058-27787426(-) (11)//scaffold_1:27875676-27876044(-) (11)	POPTR_0001s29080 (8)//POPTR_0001s29000 (6)//POPTR_0001s29020 (6)	Q39529	Agglutinin-2	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os08g03240.1	"lectin-like receptor kinase 1, putative, expressed"	Medtr4g121650.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.68529.1.S1_at	A	A1TS	POPTR_0014s06240	POPTR_0014s06240 (11)	scaffold_14:4758187-4758541(+) (11)	NA	P33080	Auxin-induced protein X10A	AT3G60690.1	SAUR-like auxin-responsive protein family  	LOC_Os02g42990.1	"OsSAUR11 - Auxin-responsive SAUR gene family member, expressed"	Medtr7g145860.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68533.1.S1_at	A	A1TS	POPTR_0008s02260	POPTR_0008s02260 (11)	scaffold_8:1086461-1087711(-) (11)	NA	Q9DCB4	cAMP-regulated phosphoprotein 21	AT3G56680.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr1g117280.1	Single-stranded nucleic acid binding R3H 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.68577.1.S1_at	A	A1TS	POPTR_0002s04240	POPTR_0002s04240 (11)	scaffold_2:2656723-2659579(+) (11)	NA	Q9M2J9	Bet1-like SNARE 1-1	AT3G58170.1	BET1P/SFT1P-like protein 14A 	LOC_Os02g57510.2	"SNARE domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68608.1.S1_at	A	A1TS	POPTR_0005s20200	POPTR_0005s20200 (11)	scaffold_5:19238655-19239503(+) (11)	NA	NA	NA	AT4G31115.1	Protein of unknown function (DUF1997) 	LOC_Os08g41040.1	expressed protein	Medtr1g068710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68616.1.S1_s_at	A	A1TS	POPTR_0016s05530	POPTR_0016s05530 (11)	scaffold_16:3463816-3465021(+) (11)	NA	P49688	40S ribosomal protein S2-3	AT2G41840.1	Ribosomal protein S5 family protein 	LOC_Os03g59310.1	"ribosomal protein, putative, expressed"	Medtr4g157070.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.68627.1.S1_at	A	A1TS	POPTR_0001s40320	POPTR_0001s40320 (11)	scaffold_1:39695030-39698036(-) (11)	NA	Q8L7M1	"Probable beta-1,3-galactosyltransferase 14"	AT1G53290.1	Galactosyltransferase family protein 	LOC_Os06g06280.1	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.6864.1.S1_at	A	A1TS	POPTR_0016s01460	POPTR_0016s01460 (9)	scaffold_16:663124-666021(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68644.1.S1_at	A	A1TS	POPTR_0007s01840	POPTR_0007s01840 (11)	scaffold_7:1057768-1058522(+) (11)	NA	O48593	"Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial"	AT4G17300.1	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os07g30200.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr8g105750.1	"Aspartyl-tRNA synthetase bacterial/mitochondrial type; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.68648.1.S1_at	A	A1TS	POPTR_0001s35310	POPTR_0001s35310 (10)	scaffold_1:33643781-33644225(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68656.1.S1_at	A	A1TS	POPTR_0013s10060	POPTR_0013s10060 (11)	scaffold_13:10040830-10041139(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g07380.1	OsFBX188 - F-box domain containing protein	Medtr4g096100.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6866.1.A1_a_at	A	A1TS	POPTR_0002s01500	POPTR_0002s01500 (11)	scaffold_2:798839-799159(+) (11)	NA	NA	NA	AT1G20430.1	unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g11060.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68666.1.S1_a_at	A	A2TS	POPTR_0001s15810	POPTR_0001s15810 (11)//POPTR_0003s07470 (11)	scaffold_1:12646051-12646647(+) (11)//scaffold_3:9019094-9019890(-) (11)	NA	P40855	Peroxisomal biogenesis factor 19	AT3G03490.1	peroxin 19-1 	LOC_Os02g44220.1	"peroxisomal biogenesis factor 19, putative, expressed"	Medtr8g105760.1	Pex19 protein 	NA	NA	GO:0005777|peroxisome
PtpAffx.68666.1.S1_at	A	A1TS	POPTR_0001s15810	POPTR_0001s15810 (11)	scaffold_1:12646004-12646621(+) (11)	NA	P40855	Peroxisomal biogenesis factor 19	AT3G03490.1	peroxin 19-1 	LOC_Os02g44220.1	"peroxisomal biogenesis factor 19, putative, expressed"	Medtr8g105760.1	Pex19 protein 	NA	NA	GO:0005777|peroxisome
PtpAffx.68666.2.S1_at	A	A1TS	POPTR_0003s07470	POPTR_0003s07470 (11)	scaffold_3:9019210-9019915(-) (11)	NA	P40855	Peroxisomal biogenesis factor 19	AT3G03490.1	peroxin 19-1 	LOC_Os02g44220.1	"peroxisomal biogenesis factor 19, putative, expressed"	Medtr8g105760.1	Pex19 protein 	NA	NA	GO:0005777|peroxisome
PtpAffx.68667.1.S1_s_at	A	A1TS	POPTR_0001s11280	POPTR_0001s11280 (11)	scaffold_1:8732781-8734636(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT4G10730.1	Protein kinase superfamily protein 	LOC_Os03g02320.1	"STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g006330.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.68679.2.S1_a_at	A	A1TS	POPTR_0007s14460	POPTR_0007s14460 (11)	scaffold_7:14232496-14233226(+) (11)	NA	Q6MAS9	Glycogen synthase	AT5G65685.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g56320.1	"glycogen synthase 1, putative, expressed"	Medtr5g032130.1	Starch synthase catalytic region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68693.1.S1_at	A	A1TS	POPTR_0001s17270	POPTR_0001s17270 (11)	scaffold_1:14086754-14090477(-) (11)	NA	NA	NA	AT3G15690.2	Single hybrid motif superfamily protein 	NA	NA	Medtr2g125830.1	Biotin/lipoyl attachment 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68744.1.S1_s_at	A	A1TS	POPTR_0006s04230	POPTR_0006s04230 (11)	scaffold_6:2894188-2894691(-) (11)	NA	Q9SS31	Probable calcium-binding protein CML36	AT3G10190.1	Calcium-binding EF-hand family protein 	LOC_Os12g04360.1	"calmodulin-like protein 1, putative, expressed"	Medtr7g107490.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68796.1.S1_at	A	A1TS	POPTR_0003s11240	POPTR_0003s11240 (11)	scaffold_3:12105457-12106592(+) (11)	NA	Q8H1Q1	"Thylakoid lumenal protein At1g12250, chloroplastic"	AT1G12250.2	Pentapeptide repeat-containing protein 	LOC_Os02g42960.1	"thylakoid lumenal protein, putative, expressed"	Medtr5g012270.2	Pentapeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68799.1.S1_at	A	A1MS	POPTR_0002s18360	POPTR_0002s18360 (9)	scaffold_2:14324648-14324963(+) (9)	NA	NA	NA	AT4G01575.1	"serine protease inhibitor, Kazal-type family protein "	LOC_Os01g59610.1	"KAZ1 - Kazal-type serine protease inhibitor precursor, expressed"	Medtr3g122130.1	"serine protease inhibitor, Kazal-type family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68821.1.A1_a_at	A	A1TS	POPTR_0015s06600	POPTR_0015s06600 (11)	scaffold_15:7541753-7543580(+) (11)	NA	Q96SZ5	2-aminoethanethiol dioxygenase	AT1G18490.1	Protein of unknown function (DUF1637) 	LOC_Os08g03870.1	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr2g073770.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.68822.1.A1_at	A	A1TS	POPTR_0001s11220	POPTR_0001s11220 (9)	scaffold_1:8701193-8701323(-) (9)	NA	Q9T096	Protein yippee-like At4g27745	AT4G27745.1	Yippee family putative zinc-binding protein 	LOC_Os12g29960.1	"yippee zinc-binding protein, putative"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68843.1.S1_at	A	A2TS	POPTR_0365s00230	POPTR_0365s00230 (10)//POPTR_0005s10230 (9)	scaffold_365:14743-15277(-) (10)//scaffold_5:7330795-7331329(+) (9)	NA	NA	NA	AT2G17500.4	Auxin efflux carrier family protein 	LOC_Os09g38130.1	"auxin efflux carrier component, putative, expressed"	Medtr5g024600.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.68858.1.A1_at	A	A1TS	POPTR_0008s02460	POPTR_0008s02460 (11)	scaffold_8:1193176-1193541(-) (11)	NA	NA	NA	AT5G22510.1	alkaline/neutral invertase 	LOC_Os02g32730.1	"neutral/alkaline invertase, putative, expressed"	Medtr4g141220.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68859.1.A1_at	A	A1TS	POPTR_0001s31520	POPTR_0001s31520 (11)	scaffold_1:29858477-29859632(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G64700.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g01570.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g144230.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.68862.1.A1_at	A	A1MS	POPTR_0009s09010	POPTR_0009s09010 (11)	scaffold_9:8105746-8105887(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68890.1.A1_at	A	A1TS	POPTR_0016s09350	POPTR_0016s09350 (11)	scaffold_16:7348207-7349921(+) (11)	NA	Q9LVV5	"Thylakoid lumenal 15.0 kDa protein 2, chloroplastic"	AT5G52970.1	thylakoid lumen 15.0 kDa protein 	LOC_Os07g34950.1	"uncharacterized membrane protein, putative, expressed"	Medtr5g038350.1	"Uncharacterized membrane protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.689.1.S1_at	A	A1TS	POPTR_0010s26200	POPTR_0010s26200 (11)	scaffold_10:21517737-21518115(-) (11)	NA	P80680	"Ferredoxin-thioredoxin reductase, variable chain"	AT5G08410.1	ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 	LOC_Os04g44650.1	"ferredoxin-thioredoxin reductase, variable chain, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0008937|ferredoxin reductase activity	GO:0009536|plastid
PtpAffx.689.2.A1_at	A	A1TS	POPTR_0008s00280	POPTR_0008s00280 (9)	scaffold_8:71095-71633(+) (9)	NA	P80680	"Ferredoxin-thioredoxin reductase, variable chain"	AT5G08410.1	ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 	LOC_Os04g44650.1	"ferredoxin-thioredoxin reductase, variable chain, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0008937|ferredoxin reductase activity	GO:0009536|plastid
PtpAffx.6890.1.S1_a_at	A	A1TS	POPTR_0001s14260	POPTR_0001s14260 (11)	scaffold_1:11212247-11212541(+) (11)	NA	Q40648	Probable voltage-gated potassium channel subunit beta	AT1G04690.1	potassium channel beta subunit 1 	LOC_Os02g57240.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g140860.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.68917.1.S1_at	A	A1TS	POPTR_0009s09110	POPTR_0009s09110 (11)	scaffold_9:8171531-8171894(-) (11)	NA	Q43295	"Adenylyl-sulfate kinase 1, chloroplastic"	AT2G14750.1	APS kinase 	LOC_Os11g41650.2	"adenylyl-sulfate kinase, putative, expressed"	Medtr8g101540.1	Adenylylsulfate kinase 	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.6892.1.S1_at	A	A1TS	POPTR_0016s06740	POPTR_0016s06740 (9)	scaffold_16:4559431-4560466(+) (9)	NA	A6U864	50S ribosomal protein L22	AT4G28360.1	Ribosomal protein L22p/L17e family protein 	LOC_Os01g42980.1	"ribosomal protein L22, putative, expressed"	Medtr1g047330.1	Ribosomal protein L22/L17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.68949.1.A1_at	A	A1TS	POPTR_0010s18300	POPTR_0010s18300 (11)	scaffold_10:16592865-16593213(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT1G79270.1	evolutionarily conserved C-terminal region 8 	LOC_Os01g48790.1	"YT521-B-like family domain containing protein, expressed"	Medtr2g085380.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68974.1.A1_at	A	A1MS	POPTR_0009s16160	POPTR_0009s16160 (11)	scaffold_9:12351859-12352113(+) (11)	NA	B9HQ42	UPF0497 membrane protein 7	AT2G27370.1	Uncharacterised protein family (UPF0497) 	LOC_Os06g12500.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr2g107550.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68976.1.A1_at	A	A1TS	POPTR_0005s10010	POPTR_0005s10010 (10)	scaffold_5:7103166-7103381(+) (10)	NA	Q9FKE6	Cyclin-T1-5	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68983.1.A1_at	A	A1MS	POPTR_0010s17640	POPTR_0010s17640 (11)	scaffold_10:16149798-16150359(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g044030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68999.1.A1_at	A	A1TS	POPTR_0015s12740	POPTR_0015s12740 (10)	scaffold_15:12959382-12959837(-) (10)	NA	NA	NA	AT5G37010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65710.1); Has 6746 Blast hits to 5259 proteins in 486 species: Archae - 7; Bacteria - 485; Metazoa - 3508; Fungi - 577; Plants - 378; Viruses - 50; Other Eukaryotes - 1741 (source: NCBI BLink). 	LOC_Os04g44640.1	"ulp1 protease family, C-terminal catalytic domain containing protein, expressed"	Medtr5g084000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69001.1.A1_at	A	A1MA	POPTR_0001s17160	POPTR_0001s17160 (9)	scaffold_1:14008966-14009617(-) (9)	NA	NA	NA	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr8g119830.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69006.2.A1_at	A	A1TS	POPTR_0001s32790	POPTR_0001s32790 (11)	scaffold_1:31106416-31106765(-) (11)	NA	NA	NA	AT3G23805.1	ralf-like 24 	LOC_Os01g15320.1	"RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed"	Medtr3g104800.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69019.1.A1_at	A	A1TS	POPTR_0004s14240	POPTR_0004s14240 (11)	scaffold_4:14713288-14713903(+) (11)	NA	Q9SZB9	Peroxidase 47	AT4G33420.1	Peroxidase superfamily protein 	LOC_Os08g02110.1	"peroxidase precursor, putative, expressed"	Medtr7g035100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.69023.1.A1_at	A	A1MS	POPTR_0010s17820	POPTR_0010s17820 (11)	scaffold_10:16269111-16269615(-) (11)	NA	Q58FY4	U-box domain-containing protein 63	AT3G19895.1	RING/U-box superfamily protein 	LOC_Os02g58280.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69075.1.A1_s_at	A	A1TS	POPTR_0010s20160	POPTR_0010s20160 (11)	scaffold_10:17859909-17861721(+) (11)	POPTR_0008s06350 (8)	NA	NA	AT2G37975.1	Yos1-like protein 	LOC_Os03g21390.1	expressed protein	Medtr4g015660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69082.1.A1_at	A	A1TS	POPTR_0001s38590	POPTR_0001s38590 (10)	scaffold_1:37784645-37784961(-) (10)	NA	NA	NA	AT1G17780.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr4g109560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69089.1.A1_s_at	A	A1TS	POPTR_0001s46450	POPTR_0001s46450 (11)	scaffold_1:46825691-46826239(+) (11)	NA	NA	NA	AT4G21105.1	cytochrome-c oxidases;electron carriers 	LOC_Os07g45320.1	"COX VIIa, putative, expressed"	Medtr8g106530.1	"Cytochrome c oxidase, subunit VIIa "	NA	GO:0004129|cytochrome-c oxidase activity||GO:0009055|electron carrier activity	GO:0005746|mitochondrial respiratory chain
PtpAffx.69090.1.A1_at	A	A1MS	POPTR_0009s10400	POPTR_0009s10400 (11)	scaffold_9:8932756-8933305(-) (11)	NA	Q9M7Q3	ABSCISIC ACID-INSENSITIVE 5-like protein 6	AT4G34000.2	abscisic acid responsive elements-binding factor 3 	LOC_Os09g28310.1	"bZIP transcription factor, putative, expressed"	Medtr4g129920.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.69114.1.A1_at	A	A1TS	POPTR_0010s03160	POPTR_0010s03160 (9)	scaffold_10:3882108-3882314(-) (9)	NA	Q6INH1	RING finger protein 157	AT3G06140.1	RING/U-box superfamily protein 	LOC_Os03g15000.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69125.1.A1_at	A	A1TS	POPTR_0004s12120	POPTR_0004s12120 (10)	scaffold_4:11056600-11057090(-) (10)	NA	Q93ZL5	Dof zinc finger protein DOF5.2	AT5G39660.2	cycling DOF factor 2 	LOC_Os01g15900.1	expressed protein	Medtr7g010180.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.69128.1.A1_at	A	A1TS	POPTR_0010s05300	POPTR_0010s05300 (11)	scaffold_10:6768541-6768778(+) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.69129.1.A1_at	A	A1TS	POPTR_0013s14810	POPTR_0013s14810 (11)	scaffold_13:14925653-14926075(-) (11)	NA	Q9FJC1	Putative FBD-associated F-box protein At5g53630	AT5G53635.1	F-box/RNI-like/FBD-like domains-containing protein 	LOC_Os07g06500.1	"OsFBL34 - F-box domain and LRR containing protein, expressed"	AC229702_9.1	Rhodopsin-like GPCR superfamily; Cyclin-like F-box; FBD; AC229702.6 88103-90335 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69134.1.A1_at	A	A1TS	POPTR_0019s14530	POPTR_0019s14530 (11)	scaffold_19:15301933-15302473(+) (11)	NA	Q56YT0	Laccase-3	AT2G30210.1	laccase 3 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr5g081380.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.69150.1.A1_at	A	A1TS	POPTR_0014s12830	POPTR_0014s12830 (11)	scaffold_14:9451034-9451585(-) (11)	NA	Q9SA68	Monothiol glutaredoxin-S1	AT1G03020.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g129950.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.69166.1.A1_at	A	A1TS	POPTR_0018s02360	POPTR_0018s02360 (11)	scaffold_18:2118341-2118546(-) (11)	NA	Q9VGY6	DOMON domain-containing protein CG14681	AT5G54830.1	DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein 	LOC_Os09g38520.1	"DOMON domain containing protein, expressed"	AC233651_15.1	DOMON; Cytochrome b561 / ferric reductase transmembrane AC233651.1 46198-48399 H EGN_Mt090430 200	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006548|histidine catabolic process	GO:0004500|dopamine beta-monooxygenase activity	NA
PtpAffx.69188.1.A1_at	A	A1TS	POPTR_0337s00220	POPTR_0337s00220 (11)	scaffold_337:12772-13171(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT1G43910.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.69188.2.A1_s_at	A	A1TS	POPTR_0005s12120	POPTR_0005s12120 (10)	scaffold_5:8890245-8890491(+) (10)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT1G43910.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.692.1.S1_x_at	A	A1TS	POPTR_0008s07450	POPTR_0008s07450 (11)	scaffold_8:4575033-4575567(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT4G14270.1	Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. 	LOC_Os03g23010.1	expressed protein	Medtr5g091120.1	"poly-binding protein C-terminal interacting protein 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.16.S1_at	A	A1MS	POPTR_0008s07450	POPTR_0008s07450 (11)	scaffold_8:4575209-4575299(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT4G14270.1	Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. 	LOC_Os03g23010.1	expressed protein	Medtr5g091120.1	"poly-binding protein C-terminal interacting protein 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.17.S1_a_at	A	A1TS	POPTR_0005s12505	POPTR_0005s12505 (11)	scaffold_5:9271278-9271440(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.2.S1_x_at	A	A1TS	POPTR_0007s12770	POPTR_0007s12770 (11)	scaffold_7:13032942-13033308(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.20.S1_s_at	A	A1TS	POPTR_0008s07450	POPTR_0008s07450 (11)	scaffold_8:4574947-4575411(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT4G14270.1	Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. 	LOC_Os03g23010.1	expressed protein	Medtr5g091120.1	"poly-binding protein C-terminal interacting protein 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.23.S1_at	A	A1TS	POPTR_0002s25510	POPTR_0002s25510 (11)	scaffold_2:22586441-22586549(+) (11)	NA	Q41228	"Photosystem I reaction center subunit IV A, chloroplastic"	AT2G20260.1	photosystem I subunit E-2 	LOC_Os07g25430.1	"photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed"	Medtr7g117870.1	Photosystem I reaction centre subunit IV/PsaE 	NA	NA	GO:0009538|photosystem I reaction center
PtpAffx.692.3.A1_at	A	A1TS	POPTR_0009s08850	POPTR_0009s08850 (11)	scaffold_9:7992317-7992459(-) (11)	NA	P33629	Tubulin alpha chain	AT1G50010.1	tubulin alpha-2 chain 	LOC_Os11g14220.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.692.31.A1_at	A	A1TS	POPTR_0005s12505	POPTR_0005s12505 (11)	scaffold_5:9270223-9270771(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.32.A1_a_at	A	A1TS	POPTR_0005s12510	POPTR_0005s12510 (9)	scaffold_5:9277310-9277536(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.34.S1_a_at	A	A1MS	POPTR_0005s12510	POPTR_0005s12510 (9)	scaffold_5:9278940-9279028(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.5.S1_s_at	A	A1TS	POPTR_0005s12510	POPTR_0005s12510 (11)	scaffold_5:9277698-9277850(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69201.1.A1_s_at	A	A1TS	POPTR_0019s03480	POPTR_0019s03480 (11)	scaffold_19:3561928-3562289(-) (11)	NA	Q9C6P3	Calcium-dependent protein kinase 33	AT3G04530.1	phosphoenolpyruvate carboxylase kinase 2 	LOC_Os02g56310.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g093530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.69205.1.A1_at	A	A1TS	POPTR_0011s07020	POPTR_0011s07020 (10)	scaffold_11:7778982-7779527(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69216.1.S1_a_at	A	A1TS	POPTR_0006s05860	POPTR_0006s05860 (11)	scaffold_6:4123638-4123863(-) (11)	NA	Q69QZ0	Probable protein phosphatase 2C 27	AT2G25620.1	DNA-binding protein phosphatase 1 	LOC_Os02g55560.1	"protein phosphatase 2C, putative, expressed"	Medtr8g122540.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69240.1.A1_s_at	A	A1TS	POPTR_0015s14200	POPTR_0015s14200 (11)	scaffold_15:13889913-13890014(-) (11)	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69245.1.A1_at	A	A1TS	POPTR_0010s16220	POPTR_0010s16220 (11)	scaffold_10:15212271-15212517(-) (11)	NA	Q9SQV1	DEAD-box ATP-dependent RNA helicase 40	AT3G06480.1	DEAD box RNA helicase family protein 	LOC_Os01g07740.3	"DEAD-box ATP-dependent RNA helicase 14, putative, expressed"	Medtr2g036940.1	"WW/Rsp5/WWP; Helicase, C-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.69262.1.A1_at	A	A1TS	POPTR_0003s10590	POPTR_0003s10590 (11)	scaffold_3:11525332-11525853(-) (11)	NA	NA	NA	AT4G19400.1	Profilin family protein 	LOC_Os05g15180.2	expressed protein	Medtr5g048080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69289.1.A1_at	A	A1TS	POPTR_0015s01920	POPTR_0015s01920 (11)	scaffold_15:1322564-1322892(-) (11)	NA	Q12874	Splicing factor 3A subunit 3	AT5G06160.1	splicing factor-related 	LOC_Os03g50850.1	"ZOS3-17 - C2H2 zinc finger protein, expressed"	Medtr3g124240.1	"Zinc finger, C2H2-type matrin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6931.1.A1_a_at	A	A1TS	POPTR_0017s11850	POPTR_0017s11850 (11)	scaffold_17:11738776-11740149(-) (11)	NA	P41098	60S ribosomal protein L34	AT1G26880.1	Ribosomal protein L34e superfamily protein 	LOC_Os09g24690.1	"60S ribosomal protein L34, putative, expressed"	Medtr7g009550.1	Ribosomal protein L34e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.69320.1.A1_at	A	A1TS	POPTR_0001s39530	POPTR_0001s39530 (9)	scaffold_1:38755200-38755589(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6933.1.A1_at	A	A1TS	POPTR_0018s02730	POPTR_0018s02730 (11)	scaffold_18:2435332-2437208(+) (11)	NA	Q96319	Enhancer of rudimentary homolog	AT5G10810.1	"enhancer of rudimentary protein, putative "	LOC_Os02g39830.1	"enhancer of rudimentary protein, putative, expressed"	Medtr1g017030.1	Enhancer of rudimentary 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69331.1.A1_at	A	A1TS	POPTR_0019s11350	POPTR_0019s11350 (11)	scaffold_19:12680461-12681766(+) (11)	NA	Q9FKT3	Ubiquitin-conjugating enzyme E2 30	AT5G56150.2	ubiquitin-conjugating enzyme 30 	LOC_Os01g60410.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr3g083600.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.69332.1.A1_at	A	A1TS	POPTR_0001s44360	POPTR_0001s44360 (11)	scaffold_1:44791806-44792274(-) (11)	NA	NA	NA	AT3G20600.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	NA	NA	Medtr2g097010.1	Harpin-induced 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69345.1.A1_at	A	A1TS	POPTR_0018s11200	POPTR_0018s11200 (11)	scaffold_18:11993081-11993322(-) (11)	NA	NA	NA	AT4G30790.1	"INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink). "	LOC_Os02g08350.1	expressed protein	Medtr8g144870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69357.1.A1_at	A	A2TS	POPTR_0011s03940	POPTR_0011s03940 (11)//POPTR_0011s03950 (11)	scaffold_11:3998932-3999395(+) (11)//scaffold_11:4002672-4003143(+) (11)	NA	NA	NA	AT4G27280.1	Calcium-binding EF-hand family protein 	LOC_Os06g46950.1	"EF hand family protein, putative, expressed"	Medtr2g011470.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69360.1.A1_s_at	A	A1TS	POPTR_0006s04320	POPTR_0006s04320 (11)	scaffold_6:2948352-2948733(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os03g23010.1	expressed protein	Medtr7g107690.1	"ERD15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69377.1.S1_at	A	A1TS	POPTR_0001s33220	POPTR_0001s33220 (9)	scaffold_1:31411745-31412894(-) (11)	NA	Q5BIM2	Uncharacterized protein KIAA1539 homolog	AT3G26890.5	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g33520.1	expressed protein	Medtr7g094450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69398.1.A1_at	A	A1TS	POPTR_0007s11170	POPTR_0007s11170 (11)	scaffold_7:11428822-11429218(-) (11)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	NA	NA	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.69400.1.A1_s_at	A	A1TS	POPTR_0010s07410	POPTR_0010s07410 (11)	scaffold_10:8471389-8471986(-) (11)	NA	Q93Y39	DEAD-box ATP-dependent RNA helicase 13	AT3G16840.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g43140.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC146793_7.1	"Helicase, C-terminal; ; AC146793.7 35969-26139 F EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.69407.1.A1_at	A	A1TS	POPTR_0006s01840	POPTR_0006s01840 (11)	scaffold_6:1111747-1112190(-) (11)	NA	NA	NA	AT5G55600.3	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os07g41640.1	"agenet domain-containing protein, putative, expressed"	Medtr2g030390.1	Bromo adjacent region; Xylose isomerase; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.69408.1.A1_s_at	A	A1TS	POPTR_0006s15660	POPTR_0006s15660 (11)	scaffold_6:13123041-13123899(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69413.1.A1_at	A	A1TS	POPTR_0014s03500	POPTR_0014s03500 (11)	scaffold_14:2810227-2810456(+) (11)	NA	Q9SZA7	Probable disease resistance protein At4g33300	AT4G33300.2	ADR1-like 1 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr1g025080.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.69420.1.A1_at	A	A1MS	POPTR_0010s10440	POPTR_0010s10440 (11)	scaffold_10:10951472-10951965(-) (11)	NA	Q8W4I4	Potassium transporter 6	AT1G70300.1	K+ uptake permease 6 	LOC_Os06g42030.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.69424.1.A1_at	A	A1TS	POPTR_0004s08580	POPTR_0004s08580 (9)	scaffold_4:7140199-7140471(+) (9)	NA	Q01831	DNA repair protein complementing XP-C cells	AT5G16630.2	DNA repair protein Rad4 family 	LOC_Os08g33082.1	"DNA-repair protein complementing XP-C cells, putative, expressed"	Medtr5g086100.1	DNA repair protein Rad4 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.69429.1.A1_at	A	A1TS	POPTR_0005s09650	POPTR_0005s09650 (11)	scaffold_5:6754940-6755610(+) (11)	NA	Q2KIQ4	"Para-hydroxybenzoate--polyprenyltransferase, mitochondrial"	AT4G23660.2	polyprenyltransferase 1 	LOC_Os08g23320.1	"para-hydroxybenzoate--polyprenyltransferase, mitochondrial precursor, putative, expressed"	Medtr7g080490.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.69450.1.A1_at	A	A1MS	POPTR_0014s03920	POPTR_0014s03920 (11)	scaffold_14:3127645-3128052(+) (11)	NA	Q5EAF2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 11"	AT1G47510.1	inositol polyphosphate 5-phosphatase 11 	LOC_Os03g42810.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr1g025830.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69456.1.A1_at	A	A1TS	POPTR_0002s19050	POPTR_0002s19050 (11)	scaffold_2:14948413-14948488(-) (11)	NA	Q9NUP7	tRNA guanosine-2'-O-methyltransferase TRM13 homolog	AT4G01880.1	methyltransferases 	LOC_Os03g61750.1	expressed protein	NA	NA	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.69457.1.A1_at	A	A1TS	POPTR_0001s34600	POPTR_0001s34600 (11)	scaffold_1:32805990-32806235(-) (11)	NA	Q9LVX1	Zinc finger CCCH domain-containing protein 41	AT3G27700.2	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os04g32340.1	"RNA-binding motif protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.69459.1.A1_at	A	A1TS	POPTR_0005s00260	POPTR_0005s00260 (11)	scaffold_5:38319-38843(+) (11)	NA	NA	NA	AT5G26731.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g103450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69471.1.S1_at	A	A1TS	POPTR_0015s10560	POPTR_0015s10560 (11)	scaffold_15:11455218-11456064(+) (11)	NA	Q9M643	Cycloeucalenol cycloisomerase	AT5G50375.1	cyclopropyl isomerase 	LOC_Os11g19700.1	"cycloeucalenol cycloisomerase, putative, expressed"	Medtr3g117440.2	"Cycloeucalenol cycloisomerase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69475.1.S1_at	A	A1TS	POPTR_0001s01165	POPTR_0001s01165 (11)	scaffold_1:908545-912231(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g39580.1	"ZOS2-12 - C2H2 zinc finger protein, expressed"	Medtr5g026670.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69475.1.S1_s_at	A	A1TS	POPTR_0001s01165	POPTR_0001s01165 (11)	scaffold_1:908574-911915(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g39580.1	"ZOS2-12 - C2H2 zinc finger protein, expressed"	Medtr5g026670.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69476.1.A1_at	A	A1MS	POPTR_0014s08510	POPTR_0014s08510 (11)	scaffold_14:6324566-6324737(+) (11)	NA	NA	NA	AT4G01290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1797 Blast hits to 1352 proteins in 216 species: Archae - 0; Bacteria - 202; Metazoa - 850; Fungi - 267; Plants - 109; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink). 	LOC_Os06g01680.1	expressed protein	Medtr7g088510.1	ABC transporter related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69478.1.A1_at	A	A1TS	POPTR_0009s16930	POPTR_0009s16930 (10)	scaffold_9:12776166-12776462(+) (10)	NA	Q6NU91	Nucleolar complex protein 4 homolog B	AT2G17250.1	CCAAT-binding factor 	LOC_Os04g49580.1	"nucleolar complex protein, putative, expressed"	Medtr5g086460.1	CBF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69480.1.A1_at	A	A1TS	POPTR_0015s10370	POPTR_0015s10370 (10)	scaffold_15:11319601-11320115(-) (10)	NA	NA	NA	AT3G01770.1	bromodomain and extraterminal domain protein 10 	LOC_Os08g03360.1	"ATBET9, putative, expressed"	Medtr2g021880.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69484.1.A1_at	A	A1TS	POPTR_0002s23550	POPTR_0002s23550 (11)	scaffold_2:21112037-21112470(+) (11)	NA	Q6ZY51	"Phosphoglucan, water dikinase, chloroplastic"	AT5G26570.1	"catalytics;carbohydrate kinases;phosphoglucan, water dikinases "	LOC_Os12g20150.1	"phosphoglucan, water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation||GO:0005975|carbohydrate metabolic process	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.6950.1.S1_at	A	A1TS	POPTR_0013s01540	POPTR_0013s01540 (9)	scaffold_13:874084-874747(+) (9)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT4G15920.1	Nodulin MtN3 family protein 	LOC_Os03g22200.1	"nodulin MtN3 family protein, putative, expressed"	Medtr5g076470.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69500.1.A1_at	A	A1TS	POPTR_0005s25510	POPTR_0005s25510 (11)	scaffold_5:23753943-23754327(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69507.1.A1_at	A	A1MS	POPTR_0008s16170	POPTR_0008s16170 (9)	scaffold_8:10806072-10806498(+) (9)	NA	Q9FIX5	Transcription factor bHLH92	AT5G43650.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g53020.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.69508.1.A1_at	A	A1TS	POPTR_0818s00200	POPTR_0818s00200 (9)	scaffold_818:3859-4046(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69515.1.S1_at	A	A1TS	POPTR_0009s05410	POPTR_0009s05410 (11)	scaffold_9:5521432-5523467(+) (11)	NA	NA	NA	AT3G20070.2	titan9 	LOC_Os01g04600.1	expressed protein	Medtr8g070540.1	"TTN9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69523.2.A1_s_at	A	A1TS	POPTR_0001s26260	POPTR_0001s26260 (11)	scaffold_1:25322176-25322356(+) (11)	NA	B5DGI7	RNA-binding protein 8A	AT1G51510.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os05g04850.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g008930.1	"RNA-binding protein 8A, putative "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.69528.1.A1_at	A	A1TS	POPTR_0007s00460	POPTR_0007s00460 (10)	scaffold_7:172318-172619(-) (10)	NA	O80568	Inositol-tetrakisphosphate 1-kinase 4	AT2G43980.1	"inositol 1,3,4-trisphosphate 5/6-kinase 4 "	LOC_Os09g34300.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69533.1.A1_at	A	A1MS	POPTR_0008s14490	POPTR_0008s14490 (11)	scaffold_8:9614868-9615317(+) (11)	NA	O04630	"Threonyl-tRNA synthetase, mitochondrial"	AT5G26830.1	Threonyl-tRNA synthetase 	LOC_Os08g19850.1	"threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed"	Medtr5g035990.1	"tRNA synthetase, class II (G, H, P and S); Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.69535.1.A1_s_at	A	A1TS	POPTR_0005s24490	POPTR_0005s24490 (10)	scaffold_5:23041747-23041993(+) (10)	NA	Q96303	Inorganic phosphate transporter 1-4	AT2G38940.1	phosphate transporter 1;4 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.69535.2.A1_s_at	A	A1TS	POPTR_0005s24500	POPTR_0005s24500 (11)	scaffold_5:23049456-23049506(+) (11)	NA	Q494P0	Probable inorganic phosphate transporter 1-7	AT3G54700.1	phosphate transporter 1;7 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.69547.2.S1_a_at	A	A1TS	POPTR_0008s20120	POPTR_0008s20120 (11)	scaffold_8:13913069-13916362(-) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT5G18810.1	SC35-like splicing factor 28 	LOC_Os03g24890.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g139830.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.6955.3.A1_a_at	A	A2TS	POPTR_0006s06390	POPTR_0018s12580 (11)//POPTR_0006s06390 (11)	scaffold_18:13134391-13134599(+) (11)//scaffold_6:4560848-4561054(+) (11)	NA	Q9LHS0	Putative clathrin assembly protein At5g35200	AT5G35200.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os06g07830.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr8g121480.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.6955.4.S1_a_at	A	A1TS	POPTR_0018s12580	POPTR_0018s12580 (11)	scaffold_18:13134685-13135205(+) (11)	NA	Q9LHS0	Putative clathrin assembly protein At5g35200	AT5G35200.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os06g07830.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr8g121480.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.69550.1.A1_at	A	A1TS	POPTR_0008s06470	POPTR_0008s06470 (11)	scaffold_8:3846735-3847177(-) (11)	NA	NA	NA	AT2G39950.1	unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). 	LOC_Os07g01060.1	expressed protein	Medtr5g089220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69575.1.A1_at	A	A1MS	POPTR_0007s04130	POPTR_0007s04130 (11)	scaffold_7:2488577-2488990(+) (11)	NA	Q9FY84	Probable gamma-secretase subunit PEN-2	AT5G09310.1	"CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast hits to 168 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). "	LOC_Os01g72960.1	expressed protein	Medtr3g143320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6959.1.S1_at	A	A1TS	POPTR_0006s24340	POPTR_0006s24340 (11)	scaffold_6:22977052-22977502(+) (11)	NA	Q8L9S3	Glutaredoxin-C6	AT4G33040.1	Thioredoxin superfamily protein 	LOC_Os05g10930.1	"OsGrx_C15 - glutaredoxin subgroup III, expressed"	Medtr1g019960.1	"Glutaredoxin-like, plant II "	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.69590.1.A1_s_at	A	A1TS	POPTR_0009s15510	POPTR_0009s15510 (11)	scaffold_9:11978829-11979238(-) (11)	NA	NA	NA	AT2G27140.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr5g094550.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69620.1.A1_s_at	A	A1TS	POPTR_0018s06810	POPTR_0018s06810 (11)	scaffold_18:6859050-6860031(-) (11)	NA	Q9FJV0	Mitogen-activated protein kinase kinase 6	AT5G56580.1	MAP kinase kinase 6 	LOC_Os01g32660.1	"STE_MEK_ste7_MAP2K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g005140.1	Tyrosine protein kinase; Nuclear transport factor 2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.6964.1.S1_at	A	A1TS	POPTR_0004s23160	POPTR_0004s23160 (10)	scaffold_4:21948084-21951201(+) (10)	NA	A3KMI0	ATP-dependent RNA helicase DHX29	AT1G58060.1	RNA helicase family protein 	LOC_Os04g35260.1	"DEAD/DEAH box helicase domain containing protein, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.69641.1.A1_at	A	A1TS	POPTR_0008s07000	POPTR_0008s07000 (11)	scaffold_8:4239375-4240105(+) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr3g094070.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69673.1.A1_s_at	A	A1TS	POPTR_0006s26180	POPTR_0006s26180 (11)	scaffold_6:24451537-24451572(-) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G25560.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os01g52110.5	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr3g135900.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.69692.1.S1_at	A	A1TS	POPTR_0019s05350	POPTR_0019s05350 (11)	scaffold_19:5677406-5677611(-) (11)	NA	NA	NA	AT5G32450.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g53770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g102810.1	"Aldo/keto reductase; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.697.1.S1_at	A	A1TS	POPTR_0009s03780	POPTR_0009s03780 (11)	scaffold_9:4370850-4371802(+) (11)	NA	Q9LVC9	60S acidic ribosomal protein P3-2	AT5G57290.1	60S acidic ribosomal protein family 	LOC_Os01g13080.1	"60S acidic ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.697.2.S1_a_at	A	A2TS	POPTR_0005s03610	POPTR_0013s02340 (11)//POPTR_0005s03610 (11)	scaffold_13:1402866-1403133(-) (11)//scaffold_5:2417993-2418260(-) (11)	NA	NA	NA	AT5G62440.1	Protein of unknown function (DUF3223) 	LOC_Os03g08810.1	expressed protein	Medtr5g011130.1	"RNA polymerase Rpb1, domain 4 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.697.2.S1_at	A	A1TS	POPTR_0013s02340	POPTR_0013s02340 (11)	scaffold_13:1402590-1403102(-) (11)	NA	NA	NA	AT5G62440.1	Protein of unknown function (DUF3223) 	LOC_Os03g08810.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.697.3.S1_at	A	A1TS	POPTR_0005s03610	POPTR_0005s03610 (11)	scaffold_5:2417644-2418193(-) (11)	NA	NA	NA	AT5G62440.1	Protein of unknown function (DUF3223) 	LOC_Os03g08810.1	expressed protein	Medtr5g011130.1	"RNA polymerase Rpb1, domain 4 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.697.4.S1_a_at	A	A1TS	POPTR_0011s04710	POPTR_0011s04710 (11)	scaffold_11:4684348-4684506(-) (11)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.69711.1.A1_at	A	A1TS	POPTR_0001s39020	POPTR_0001s39020 (11)	scaffold_1:38269521-38269879(+) (11)	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.69725.1.S1_a_at	A	A1TS	POPTR_0003s12200	POPTR_0003s12200 (11)	scaffold_3:12868409-12868873(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g009110.1	"Putative invertase inhibitor precursor, "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.6973.1.S1_a_at	A	A1TS	POPTR_0001s32530	POPTR_0001s32530 (10)	scaffold_1:30846733-30847171(+) (10)	NA	NA	NA	AT3G23910.1	BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink). 	LOC_Os04g31050.1	expressed protein	Medtr3g105300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69736.1.A1_at	A	A1TS	POPTR_0007s10990	POPTR_0007s10990 (10)	scaffold_7:11226717-11227143(-) (10)	NA	NA	NA	AT5G67020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g36820.1	expressed protein	Medtr5g017350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69742.1.A1_at	A	A1MS	POPTR_0022s00800	POPTR_0022s00800 (10)	scaffold_22:391746-392868(+) (10)	NA	Q5KLN6	Ribosome biogenesis protein ERB1	AT2G40360.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g25440.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g005810.2	"Calcium-binding EF-hand; BOP1, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69748.1.A1_at	A	A1TS	POPTR_0002s01440	POPTR_0002s01440 (9)	scaffold_2:754454-756903(-) (11)	NA	NA	NA	AT1G20460.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g46681.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6975.1.S1_at	A	A1TS	POPTR_0014s01850	POPTR_0014s01850 (9)	scaffold_14:1707565-1708090(+) (9)	NA	P37831	Lipoxygenase 1	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os05g23880.1	"lipoxygenase, putative, expressed"	Medtr7g139190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.69750.1.A1_s_at	A	A1TS	POPTR_0006s13240	POPTR_0006s13240 (11)	scaffold_6:10475556-10477395(-) (11)	NA	NA	NA	AT2G37110.1	PLAC8 family protein 	LOC_Os01g06460.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr7g121070.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69764.1.S1_a_at	A	A2TS	POPTR_0004s12060	POPTR_0004s12060 (11)//POPTR_0017s12530 (11)	scaffold_17:12685416-12685809(-) (11)//scaffold_4:10978000-10978365(+) (11)	NA	Q9LF41	Probable ubiquitin conjugation factor E4	AT5G15400.1	U-box domain-containing protein 	LOC_Os03g31400.1	"U-box domain-containing protein, putative, expressed"	Medtr6g013860.1	U box 	GO:0016567|protein ubiquitination||GO:0006511|ubiquitin-dependent protein catabolic process	GO:0034450|ubiquitin-ubiquitin ligase activity||GO:0005515|protein binding	GO:0000151|ubiquitin ligase complex
PtpAffx.69764.1.S1_at	A	A1TS	POPTR_0004s12060	POPTR_0004s12060 (11)	scaffold_4:10977929-10978643(+) (11)	NA	Q9LF41	Probable ubiquitin conjugation factor E4	AT5G15400.1	U-box domain-containing protein 	LOC_Os03g31400.1	"U-box domain-containing protein, putative, expressed"	Medtr6g013860.1	U box 	GO:0016567|protein ubiquitination||GO:0006511|ubiquitin-dependent protein catabolic process	GO:0034450|ubiquitin-ubiquitin ligase activity||GO:0005515|protein binding	GO:0000151|ubiquitin ligase complex
PtpAffx.69764.2.A1_at	A	A1TS	POPTR_0017s12530	POPTR_0017s12530 (11)	scaffold_17:12685147-12685887(-) (11)	NA	Q9LF41	Probable ubiquitin conjugation factor E4	AT5G15400.1	U-box domain-containing protein 	LOC_Os03g31400.1	"U-box domain-containing protein, putative, expressed"	Medtr6g013860.1	U box 	GO:0016567|protein ubiquitination||GO:0006511|ubiquitin-dependent protein catabolic process	GO:0034450|ubiquitin-ubiquitin ligase activity||GO:0005515|protein binding	GO:0000151|ubiquitin ligase complex
PtpAffx.69774.1.A1_at	A	A2TS	POPTR_0019s05250	POPTR_0019s05250 (11)//POPTR_0007s15090 (9)	scaffold_19:5518619-5518886(-) (11)//scaffold_7:14734541-14734770(-) (9)	NA	Q9FWQ5	Histone acetyltransferase HAC12	AT1G79000.2	histone acetyltransferase of the CBP family 1 	NA	NA	Medtr4g163230.1	"Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69782.1.S1_at	A	A1TS	POPTR_0004s14110	POPTR_0004s14110 (11)	scaffold_4:14595955-14596006(+) (11)	NA	NA	NA	AT5G23490.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). 	LOC_Os05g01060.1	expressed protein	Medtr7g035260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69782.1.S1_s_at	A	A1TS	POPTR_0004s14110	POPTR_0004s14110 (11)	scaffold_4:14596073-14596426(+) (11)	NA	NA	NA	AT5G23490.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). 	LOC_Os05g01060.1	expressed protein	Medtr7g035260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69785.2.A1_a_at	A	A1TS	POPTR_0016s08600	POPTR_0016s08600 (11)	scaffold_16:6420305-6420713(+) (11)	NA	Q8VYK4	Nuclear transcription factor Y subunit B-8	AT2G37060.3	"nuclear factor Y, subunit B8 "	LOC_Os05g38820.5	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr7g068360.1	"Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone "	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.69789.1.A1_s_at	A	A1TS	POPTR_0002s23180	POPTR_0002s23180 (11)	scaffold_2:20599010-20600940(-) (11)	NA	Q67YI9	Clathrin interactor EPSIN 2	AT2G43160.1	ENTH/VHS family protein 	LOC_Os02g56270.1	"ENTH domain containing protein, expressed"	Medtr7g005820.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69791.1.S1_at	A	A1TS	POPTR_0001s20630	POPTR_0001s20630 (11)	scaffold_1:18611803-18612306(-) (11)	NA	Q9MT28	"Threonine synthase, chloroplastic"	AT1G72810.1	Pyridoxal-5'-phosphate-dependent enzyme family protein 	LOC_Os05g47640.1	"threonine synthase, chloroplast precursor, putative, expressed"	Medtr2g120680.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.69791.2.S1_at	A	A1TS	POPTR_0003s02770	POPTR_0003s02770 (11)	scaffold_3:2898599-2899154(+) (11)	NA	Q9MT28	"Threonine synthase, chloroplastic"	AT1G72810.1	Pyridoxal-5'-phosphate-dependent enzyme family protein 	LOC_Os05g47640.1	"threonine synthase, chloroplast precursor, putative, expressed"	Medtr2g120680.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.69792.1.A1_at	A	A1TA	POPTR_0007s04750	POPTR_0007s04750 (11)	scaffold_7:2970380-2970822(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.69797.1.A1_a_at	A	A2TS	POPTR_0018s13840	POPTR_0018s13840 (11)//POPTR_0018s13830 (10)	scaffold_18:14095657-14100294(+) (11)//scaffold_18:14100199-14100409(+) (10)	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23550.1	"basic helix-loop-helix family protein, putative, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.69797.2.A1_at	A	A1TS	POPTR_0018s13830	POPTR_0018s13830 (9)	scaffold_18:14094965-14095417(+) (9)	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23440.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.69803.1.A1_at	A	A1TS	POPTR_0014s07810	POPTR_0014s07810 (11)	scaffold_14:5836922-5837262(+) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT4G00710.1	BR-signaling kinase 3 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69812.1.A1_at	A	A1TS	POPTR_0017s00540	POPTR_0017s00540 (11)	scaffold_17:206477-208214(-) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT5G10860.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.4	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69831.1.A1_at	A	A1TS	POPTR_0006s19880	POPTR_0006s19880 (11)	scaffold_6:18902207-18902751(-) (11)	NA	C0LGK9	Probable LRR receptor-like serine/threonine-protein kinase At2g24230	AT2G24230.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g17410.1	"BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed"	Medtr8g145450.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.69841.1.A1_at	A	A1TS	POPTR_0002s04020	POPTR_0002s04020 (11)	scaffold_2:2520962-2521123(-) (11)	NA	Q8LDC8	Ethylene-responsive transcription factor 1B	AT3G23240.1	ethylene response factor 1 	LOC_Os03g64260.1	"AP2 domain containing protein, expressed"	Medtr1g042600.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.69845.1.A1_at	A	A1TS	POPTR_0005s02670	POPTR_0005s02670 (9)	scaffold_5:1705767-1706068(-) (9)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.3	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69848.1.A1_at	A	A1TA	POPTR_0001s26300	POPTR_0001s26300 (11)	scaffold_1:25358364-25358716(-) (11)	NA	Q8RWI9	ABC transporter G family member 15	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os05g13520.1	"white-brown complex homolog protein 12, putative, expressed"	Medtr4g104580.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.69854.1.A1_at	A	A1TS	POPTR_0006s20680	POPTR_0006s20680 (11)	scaffold_6:19686003-19687246(+) (11)	NA	O48520	DNA polymerase delta small subunit	AT2G42120.2	DNA polymerase delta small subunit 	LOC_Os03g03650.1	"POLD2 - Putative DNA polymerase delta complex subunit, expressed"	Medtr7g111910.1	DNA polymerase epsilon subunit B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.6986.1.S1_at	A	A1TS	POPTR_0006s01830	POPTR_0006s01830 (10)	scaffold_6:1108066-1109031(+) (10)	NA	Q9ATB4	Transcriptional adapter ADA2b	AT4G16420.2	homolog of yeast ADA2 2B 	LOC_Os03g53960.2	"transcriptional adaptor, putative, expressed"	Medtr2g030360.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; SWIRM; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69860.1.A1_at	A	A1TS	POPTR_0011s00550	POPTR_0011s00550 (10)	scaffold_11:266158-266442(+) (10)	NA	P29790	"ATP synthase gamma chain, chloroplastic"	AT4G04640.1	"ATPase, F1 complex, gamma subunit protein "	LOC_Os07g32880.1	"ATP synthase gamma chain, putative, expressed"	Medtr3g068860.1	"H+-transporting two-sector ATPase, gamma subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)"""
PtpAffx.69869.1.A1_at	A	A1TS	POPTR_0015s04800	POPTR_0015s04800 (11)	scaffold_15:4991573-4994670(-) (11)	NA	Q6PC19	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	AT1G73820.1	Ssu72-like family protein 	LOC_Os12g07050.1	"RNA polymerase II subunit A C-terminal domain phosphatase ssu72, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	GO:0004721|phosphoprotein phosphatase activity	GO:0005634|nucleus
PtpAffx.69871.2.A1_a_at	A	A1TS	POPTR_0013s15410	POPTR_0013s15410 (11)	scaffold_13:15405187-15406136(+) (11)	NA	Q2V0W1	Pheophorbidase	AT3G10870.1	methyl esterase 17 	LOC_Os11g02570.1	"esterase, putative, expressed"	Medtr5g076890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69877.1.A1_a_at	A	A2TS	POPTR_0008s14970	POPTR_0008s14970 (11)//POPTR_0010s10110 (11)	scaffold_10:10683381-10683422(+) (11)//scaffold_8:9975826-9975867(-) (11)	NA	NA	NA	AT3G05980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19340.1); Has 202 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 148; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	NA	NA	Medtr1g132810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69877.1.A1_at	A	A1TS	POPTR_0008s14970	POPTR_0008s14970 (11)	scaffold_8:9975459-9975804(-) (11)	NA	NA	NA	AT3G05980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19340.1); Has 202 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 148; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	NA	NA	Medtr1g132810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69880.1.A1_at	A	A1TS	POPTR_0009s03790	POPTR_0009s03790 (11)	scaffold_9:4380257-4380583(+) (11)	NA	Q9XE58	Scarecrow-like protein 14	AT1G07530.1	SCARECROW-like 14 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69882.1.A1_s_at	A	A1TS	POPTR_0003s09650	POPTR_0003s09650 (11)	scaffold_3:10925275-10925739(+) (11)	NA	NA	NA	AT2G35540.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os06g02170.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr5g028980.1	"Aminoacyl-tRNA synthetase, class I "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.69883.1.A1_at	A	A1TS	POPTR_0005s01460	POPTR_0005s01460 (11)	scaffold_5:956447-957164(+) (11)	NA	NA	NA	AT1G09320.1	agenet domain-containing protein 	LOC_Os05g04180.1	"agenet domain containing protein, putative, expressed"	Medtr2g037560.1	SH3; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.69888.1.A1_at	A	A1TS	POPTR_0006s07760	POPTR_0006s07760 (11)	scaffold_6:5681996-5682673(+) (11)	NA	Q9CZU3	Superkiller viralicidic activity 2-like 2	AT2G06990.1	"RNA helicase, ATP-dependent, SK12/DOB1 protein "	LOC_Os11g07500.1	"DSHCT domain containing protein, expressed"	Medtr4g161100.1	"ATP-requiring DNA helicase RecQ; DSH, C-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.6990.1.S1_at	A	A1MS	POPTR_0006s08360	POPTR_0006s08360 (9)	scaffold_6:6094509-6094741(+) (9)	NA	Q91858	Transcription initiation factor TFIID subunit 12	AT3G10070.1	TBP-associated factor 12 	LOC_Os01g63940.1	"Transcription initiation factor TFIID subunit A containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0043565|sequence-specific DNA binding||GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
PtpAffx.69902.1.A1_at	A	A1TS	POPTR_0002s23150	POPTR_0002s23150 (11)	scaffold_2:20581502-20581592(+) (11)	POPTR_0014s14940 (7)	Q9D3E6	Cohesin subunit SA-1	AT2G47980.1	sister-chromatid cohesion protein 3 	LOC_Os05g09620.1	"SCC3, putative, expressed"	AC235488_7.1	"HMG-I and HMG-Y, DNA-binding AC235488.1 16550-28206 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69902.1.A1_s_at	A	A1TS	POPTR_0002s23150	POPTR_0002s23150 (11)	scaffold_2:20583119-20583825(+) (11)	NA	Q9D3E6	Cohesin subunit SA-1	AT2G47980.1	sister-chromatid cohesion protein 3 	LOC_Os05g09620.1	"SCC3, putative, expressed"	AC235488_7.1	"HMG-I and HMG-Y, DNA-binding AC235488.1 16550-28206 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69903.1.A1_at	A	A1TS	POPTR_0008s09590	POPTR_0008s09590 (11)	scaffold_8:5931398-5931905(+) (11)	NA	Q9S7I6	LRR receptor-like serine/threonine-protein kinase RPK2	AT3G02130.1	receptor-like protein kinase 2 	LOC_Os07g41140.1	"receptor-like protein kinase precursor, putative, expressed"	AC231342_17.1	Tyrosine protein kinase AC231342.3 81719-78663 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.69909.1.A1_at	A	A1TS	POPTR_0014s04210	POPTR_0014s04210 (11)	scaffold_14:3312800-3314126(-) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT1G75100.1	J-domain protein required for chloroplast accumulation response 1 	LOC_Os03g10180.1	expressed protein	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6991.1.A1_a_at	A	A1TS	POPTR_0008s01770	POPTR_0008s01770 (11)	scaffold_8:837356-837390(-) (11)	NA	NA	NA	AT5G04750.1	"F1F0-ATPase inhibitor protein, putative "	LOC_Os02g33070.1	expressed protein	AC233577_44.1	hypothetical protein AC233577.5 201575-203831 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6991.1.A1_s_at	A	A1TS	POPTR_0008s01770	POPTR_0008s01770 (11)	scaffold_8:837458-838732(-) (11)	NA	NA	NA	AT5G04750.1	"F1F0-ATPase inhibitor protein, putative "	LOC_Os02g33070.1	expressed protein	AC233577_44.1	hypothetical protein AC233577.5 201575-203831 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69911.1.A1_a_at	A	A1TS	POPTR_0006s13170	POPTR_0006s13170 (11)	scaffold_6:10391874-10392284(+) (11)	NA	Q94KB9	MLO-like protein 3	AT3G45290.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr2g110820.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.69913.1.A1_s_at	A	A1TS	POPTR_0016s04520	POPTR_0016s04520 (11)	scaffold_16:2655581-2658288(+) (11)	NA	Q8S9M1	"Probable plastid-lipid-associated protein 13, chloroplastic"	AT2G42130.4	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g57020.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69926.1.A1_at	A	A1TS	POPTR_0003s12060	POPTR_0003s12060 (10)	scaffold_3:12751794-12751906(-) (10)	NA	Q93ZQ5	SPX domain-containing membrane protein At4g22990	AT4G22990.1	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os04g48390.1	"uncharacterized membrane protein, putative, expressed"	Medtr1g126330.1	"SPX, N-terminal; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69940.1.A1_at	A	A1TS	POPTR_0008s13700	POPTR_0008s13700 (11)	scaffold_8:9012512-9013013(-) (11)	NA	Q5PNY6	U-box domain-containing protein 21	AT5G37490.1	ARM repeat superfamily protein 	LOC_Os02g50460.1	"immediate-early fungal elicitor protein CMPG1, putative, expressed"	Medtr5g085300.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.69954.1.A1_s_at	A	A1TS	POPTR_0010s04590	POPTR_0010s04590 (11)	scaffold_10:5711824-5715172(-) (11)	NA	NA	NA	AT1G70180.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g39090.1	"SAM domain containing protein, putative, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69957.1.A1_at	A	A1TS	POPTR_0003s05510	POPTR_0003s05510 (11)	scaffold_3:6810698-6811226(+) (11)	NA	NA	NA	AT1G52380.1	NUP50 (Nucleoporin 50 kDa) protein 	LOC_Os05g28190.1	"ranBP1 domain containing protein, expressed"	NA	NA	GO:0046907|intracellular transport	NA	NA
PtpAffx.69958.1.A1_at	A	A1TS	POPTR_0005s02350	POPTR_0005s02350 (11)	scaffold_5:1524136-1524992(-) (11)	NA	Q9M8J3	Protein FAR1-RELATED SEQUENCE 7	AT3G06250.1	FAR1-related sequence 7 	LOC_Os03g50900.1	"transposon protein, putative, unclassified, expressed"	Medtr2g026200.1	"FAR1; Zinc finger, SWIM-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69980.1.A1_at	A	A1TS	POPTR_0015s12790	POPTR_0015s12790 (11)	scaffold_15:13012702-13013300(-) (11)	NA	Q9FEF8	rRNA 2'-O-methyltransferase fibrillarin 1	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.69984.1.A1_at	A	A1TS	POPTR_0007s05440	POPTR_0007s05440 (11)	scaffold_7:3538337-3540206(+) (11)	NA	Q9FMF5	Root phototropism protein 3	AT5G10250.1	Phototropic-responsive NPH3 family protein 	LOC_Os02g35970.1	"BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr4g120980.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.7.2.A1_s_at	A	A1TS	POPTR_0008s05560	POPTR_0008s05560 (11)	scaffold_8:3232484-3232809(+) (11)	NA	P30171	Actin-97	AT3G12110.1	actin-11 	LOC_Os03g50885.1	"actin, putative, expressed"	Medtr7g027010.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.70003.1.A1_at	A	A1TS	POPTR_0007s10500	POPTR_0007s10500 (11)	scaffold_7:10509512-10510030(+) (11)	NA	C0LGS3	Probable LRR receptor-like serine/threonine-protein kinase At4g37250	AT4G37250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g02250.1	"transposon protein, putative, unclassified, expressed"	Medtr4g011740.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.7001.1.S1_s_at	A	A1TS	POPTR_0010s13240	POPTR_0010s13240 (11)	scaffold_10:13105535-13105798(-) (11)	NA	Q39ZL8	Cysteinyl-tRNA synthetase	AT5G38830.1	"Cysteinyl-tRNA synthetase, class Ia family protein "	LOC_Os09g38420.1	"cysteinyl-tRNA synthetase, putative, expressed"	Medtr1g140620.1	"Cysteinyl-tRNA synthetase, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006423|cysteinyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0004817|cysteine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.70036.1.A1_at	A	A1TS	POPTR_0001s02470	POPTR_0001s02470 (11)	scaffold_1:1913515-1913780(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70045.1.A1_s_at	A	A1TS	POPTR_0004s12080	POPTR_0004s12080 (11)	scaffold_4:10991696-10992646(+) (11)	NA	A9URZ4	Pescadillo homolog	AT5G14520.1	pescadillo-related 	LOC_Os03g49210.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr7g118450.1	"BRCT; Pescadillo, N-terminal "	GO:0008283|cell proliferation	NA	GO:0005730|nucleolus
PtpAffx.70051.1.A1_at	A	A1TS	POPTR_0001s31310	POPTR_0001s31310 (11)	scaffold_1:29645090-29645341(-) (11)	NA	Q5R7Q3	Magnesium transporter NIPA2	AT2G21120.1	Protein of unknown function (DUF803) 	LOC_Os05g35570.1	"DUF803 domain containing, putative, expressed"	Medtr4g144260.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70059.1.A1_s_at	A	A1TS	POPTR_0001s21140	POPTR_0001s21140 (11)	scaffold_1:19484647-19485201(-) (11)	NA	NA	NA	AT3G15840.5	post-illumination chlorophyll fluorescence increase 	LOC_Os03g38950.1	"chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed"	Medtr4g005610.1	"PIFI, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70091.1.A1_a_at	A	A1TS	POPTR_0010s15830	POPTR_0010s15830 (11)	scaffold_10:14941981-14942202(+) (11)	NA	NA	NA	AT1G47970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 93717 Blast hits to 40765 proteins in 1891 species: Archae - 1046; Bacteria - 16276; Metazoa - 26677; Fungi - 16127; Plants - 6028; Viruses - 1519; Other Eukaryotes - 26044 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70110.1.A1_at	A	A1TS	POPTR_0002s14750	POPTR_0002s14750 (11)	scaffold_2:10949999-10950328(+) (11)	POPTR_0014s06400 (6)	O81312	UDP-glucuronate 4-epimerase 3	AT4G00110.1	UDP-D-glucuronate 4-epimerase 3 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr4g025510.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.70114.1.A1_at	A	A1TA	POPTR_0005s13780	POPTR_0005s13780 (11)	scaffold_5:10774317-10774510(-) (11)	NA	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.1	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.70125.1.S1_s_at	A	A1TS	POPTR_0003s14940	POPTR_0003s14940 (11)	scaffold_3:14857656-14858484(+) (11)	NA	Q4PC17	Multiple RNA-binding domain-containing protein 1	AT4G19610.1	nucleotide binding;nucleic acid binding;RNA binding 	LOC_Os04g52200.1	"RNA recognition motif containing protein, putative, expressed"	Medtr2g021990.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.70149.1.A1_s_at	A	A1TS	POPTR_0013s00990	POPTR_0013s00990 (11)	scaffold_13:530699-531426(+) (11)	NA	Q6ZQ18	Protein EFR3 homolog B	AT5G26850.4	Uncharacterized protein 	LOC_Os03g19520.1	"cyclin-related protein, putative, expressed"	Medtr4g050000.1	"cyclin-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70153.1.A1_at	A	A1MS	POPTR_0018s14940	POPTR_0018s14940 (11)	scaffold_18:14939685-14939874(-) (11)	NA	Q6ZPJ0	Testis-expressed sequence 2 protein	AT1G17820.1	Putative integral membrane protein conserved region (DUF2404) 	LOC_Os02g58110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70165.1.A1_at	A	A1TS	POPTR_0007s10270	POPTR_0007s10270 (10)	scaffold_7:10099740-10100160(-) (10)	NA	NA	NA	AT4G37440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50040.1); Has 220 Blast hits to 205 proteins in 55 species: Archae - 0; Bacteria - 15; Metazoa - 50; Fungi - 11; Plants - 76; Viruses - 3; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os05g30210.1	expressed protein	Medtr4g128490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70178.1.S1_s_at	A	A1TS	POPTR_0006s05870	POPTR_0006s05870 (11)	scaffold_6:4133611-4134738(-) (11)	NA	P46379	Large proline-rich protein BAT3	AT5G25270.1	Ubiquitin-like superfamily protein 	LOC_Os08g19830.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70182.1.A1_at	A	A1TS	POPTR_0002s16110	POPTR_0002s16110 (11)	scaffold_2:12000639-12001252(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70187.1.A1_at	A	A1TS	POPTR_0001s40310	POPTR_0001s40310 (11)	scaffold_1:39669488-39669943(-) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT1G53300.1	tetratricopetide-repeat thioredoxin-like 1 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.70192.2.A1_at	A	A1MS	POPTR_0013s11670	POPTR_0013s11670 (11)	scaffold_13:12342637-12342757(-) (11)	NA	NA	NA	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.70199.1.A1_a_at	A	A1TS	POPTR_0008s19100	POPTR_0008s19100 (11)	scaffold_8:13085170-13085479(-) (11)	NA	NA	NA	AT1G70620.3	cyclin-related 	LOC_Os04g56630.1	"transposon protein, putative, unclassified, expressed"	Medtr8g081860.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70207.1.A1_at	A	A1TS	POPTR_0003s08610	POPTR_0003s08610 (11)	scaffold_3:10026656-10027658(+) (11)	NA	NA	NA	AT1G32400.3	tobamovirus multiplication 2A 	LOC_Os08g18044.2	"tetraspanin family protein, putative, expressed"	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.7021.1.S1_s_at	A	A1TA	POPTR_0039s00210	POPTR_0039s00210 (10)	scaffold_11:8953251-8953468(-) (10)//scaffold_39:7375-7592(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70210.1.S1_at	A	A1TS	POPTR_0015s12990	POPTR_0015s12990 (11)	scaffold_15:13124870-13125204(+) (11)	NA	Q8R116	Protein notum homolog	AT5G23870.3	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr1g127000.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70210.2.S1_a_at	A	A1TS	POPTR_0015s12990	POPTR_0015s12990 (11)	scaffold_15:13124550-13124986(+) (11)	NA	Q8R116	Protein notum homolog	AT5G23870.3	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr1g127000.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70214.1.A1_at	A	A1MA	POPTR_0014s10390	POPTR_0014s10390 (11)	scaffold_14:7784039-7784292(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70214.1.A1_s_at	A	A1TA	POPTR_0014s10390	POPTR_0014s10390 (11)	scaffold_14:7783796-7784325(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70231.1.A1_at	A	A1TS	POPTR_0005s16270	POPTR_0005s16270 (10)	scaffold_5:12982778-12983259(+) (10)	NA	Q6GQJ2	Protein Jade-1	AT1G77800.1	PHD finger family protein 	LOC_Os02g52960.1	"PHD-finger domain containing protein, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70248.1.A1_at	A	A1TS	POPTR_0018s02160	POPTR_0018s02160 (9)	scaffold_18:1922652-1922790(+) (9)	NA	NA	NA	AT5G25265.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g08180.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70270.1.S1_at	A	A1TS	POPTR_0012s12120	POPTR_0012s12120 (11)	scaffold_12:12388363-12389986(-) (11)	NA	Q94F00	"Phosphatase IMPL1, chloroplastic"	AT1G31190.1	myo-inositol monophosphatase like 1 	LOC_Os02g07350.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.7030.1.A1_at	A	A1TS	POPTR_0015s14550	POPTR_0015s14550 (11)	scaffold_15:14102161-14102755(+) (11)	NA	Q84KJ5	"Cryptochrome DASH, chloroplastic/mitochondrial"	AT4G25290.1	DNA photolyases;DNA photolyases 	LOC_Os09g36240.3	"deoxyribodipyrimidine photolyase family protein, expressed"	Medtr5g067450.1	Alpha/beta hydrolase fold 	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.70305.1.S1_s_at	A	A1TS	POPTR_0001s37260	POPTR_0001s37260 (11)	scaffold_1:36227975-36228183(+) (11)	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.7037.1.S1_at	A	A1TS	POPTR_0006s21400	POPTR_0006s21400 (10)	scaffold_6:20465032-20465506(+) (10)	NA	Q93YS4	ABC transporter G family member 22	AT5G06530.1	ABC-2 type transporter family protein 	LOC_Os03g06139.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.7040.1.S1_at	A	A1TS	POPTR_0010s25830	POPTR_0010s25830 (11)	scaffold_10:21312081-21312481(+) (11)	NA	NA	NA	AT3G21150.1	B-box 32 	LOC_Os08g08120.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g103200.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.70404.1.S1_s_at	A	A1TS	POPTR_0002s20210	POPTR_0002s20210 (11)	scaffold_2:16160283-16160904(+) (11)	NA	O81635	Kinesin-4	AT5G27000.1	kinesin 4 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.70407.1.S1_s_at	A	A1TS	POPTR_0016s03060	POPTR_0016s03060 (11)	scaffold_16:1532543-1534133(-) (11)	NA	Q940A2	Protein kinase and PP2C-like domain-containing protein	AT2G40860.1	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein 	LOC_Os01g36080.2	"protein phosphatase 2C containing protein, expressed"	Medtr1g068720.1	Tyrosine protein kinase; Protein phosphatase 2C-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.70418.1.A1_at	A	A1TS	POPTR_0001s07080	POPTR_0001s07080 (11)	scaffold_1:5393442-5393932(+) (11)	NA	NA	NA	AT2G26920.1	Ubiquitin-associated/translation elongation factor EF1B protein 	LOC_Os05g33850.1	"UBA/TS-N domain containing protein, expressed"	Medtr5g095840.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70419.1.A1_at	A	A1TS	POPTR_0017s04500	POPTR_0017s04500 (11)	scaffold_17:3464464-3465571(+) (11)	NA	Q93YW5	Probable protein phosphatase 2C 58	AT4G28400.1	Protein phosphatase 2C family protein 	LOC_Os07g32380.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70456.1.A1_at	A	A1TS	POPTR_0018s03080	POPTR_0018s03080 (11)	scaffold_18:2748607-2749119(+) (11)	NA	Q55680	Uncharacterized protein sll0005	AT5G24970.1	Protein kinase superfamily protein 	LOC_Os07g27480.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr3g138600.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70458.1.S1_a_at	A	A2TS	POPTR_0012s08770	POPTR_0012s08770 (11)//POPTR_0015s09560 (11)	scaffold_12:9849718-9849753(+) (11)//scaffold_15:10748257-10748292(+) (11)	NA	Q5RC94	Next to BRCA1 gene 1 protein	AT4G24690.1	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein 	LOC_Os02g38050.3	"joka2, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.70458.1.S1_at	A	A1TS	POPTR_0012s08770	POPTR_0012s08770 (11)	scaffold_12:9849571-9850747(+) (11)	NA	Q5RC94	Next to BRCA1 gene 1 protein	AT4G24690.1	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein 	LOC_Os02g38050.3	"joka2, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.70458.2.S1_at	A	A1TS	POPTR_0015s09560	POPTR_0015s09560 (10)	scaffold_15:10749164-10749686(+) (10)	NA	Q5RC94	Next to BRCA1 gene 1 protein	AT4G24690.1	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein 	LOC_Os02g38050.3	"joka2, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.70497.1.S1_at	A	A1TS	POPTR_0001s01390	POPTR_0001s01390 (11)	scaffold_1:1041577-1041615(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70497.1.S1_s_at	A	A1TS	POPTR_0001s01390	POPTR_0001s01390 (11)	scaffold_1:1040211-1041519(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7050.1.S1_at	A	A1TS	POPTR_0001s24840	POPTR_0001s24840 (11)	scaffold_1:24089433-24090786(+) (11)	NA	Q6R0E3	Telomere repeat-binding protein 5	AT1G07540.1	TRF-like 2 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr2g116750.1	Ubiquitin; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7050.2.S1_at	A	A1MS	POPTR_0009s03730	POPTR_0009s03730 (10)	scaffold_9:4329109-4330375(-) (10)	NA	Q6R0E3	Telomere repeat-binding protein 5	AT1G07540.1	TRF-like 2 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr2g116750.1	Ubiquitin; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70542.1.S1_s_at	A	A1TS	POPTR_0010s19630	POPTR_0010s19630 (11)	scaffold_10:17506170-17506730(+) (11)	NA	Q8LDP4	Peptidyl-prolyl cis-trans isomerase CYP19-4	AT3G55920.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os06g49480.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr3g093650.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.70584.1.S1_s_at	A	A1TS	POPTR_0007s15020	POPTR_0007s15020 (11)	scaffold_7:14675448-14676302(-) (11)	NA	P93736	Valyl-tRNA synthetase	AT1G14610.1	valyl-tRNA synthetase / valine--tRNA ligase (VALRS) 	LOC_Os03g48850.2	"valyl-tRNA synthetase, putative, expressed"	Medtr1g129510.1	"Isoleucyl-tRNA synthetase, class Ia; "	GO:0006438|valyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004832|valine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.70618.1.S1_at	A	A1TS	POPTR_0002s18110	POPTR_0002s18110 (11)	scaffold_2:13983889-13983934(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g146150.2	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70618.1.S1_s_at	A	A1TS	POPTR_0002s18110	POPTR_0002s18110 (10)	scaffold_2:13983642-13983964(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g146150.2	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70618.2.S1_at	A	A1TS	POPTR_0002s18110	POPTR_0002s18110 (11)	scaffold_2:13982991-13983142(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g146150.2	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70620.1.S1_at	A	A1TS	POPTR_0010s20660	POPTR_0010s20660 (10)	scaffold_10:18144150-18146202(-) (10)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT3G55580.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os01g62810.2	"regulator of chromosome condensation, putative, expressed"	Medtr3g092040.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70652.1.A1_at	A	A1TS	POPTR_0007s01250	POPTR_0007s01250 (11)	scaffold_7:693810-694279(+) (11)	POPTR_0007s01280 (6)	Q5R8J8	DnaJ homolog subfamily B member 4	AT2G20560.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	Medtr4g108870.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.70709.1.S1_at	A	A1TS	POPTR_0009s12140	POPTR_0009s12140 (10)	scaffold_9:9947593-9947872(-) (10)	NA	P55231	"Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic"	AT4G39210.1	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os05g50380.2	"glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed"	Medtr4g095980.1	Protein kinase; ADP-glucose pyrophosphorylase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.70726.1.S1_at	A	A1TS	POPTR_0015s15800	POPTR_0015s15800 (9)	scaffold_15:15011012-15011224(+) (9)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.70726.2.S1_at	A	A3TS	POPTR_0015s12580	POPTR_0015s12580 (11)//POPTR_0015s15840 (11)//POPTR_0015s12670 (9)	scaffold_15:12799666-12799991(+) (11)//scaffold_15:12908288-12908611(+) (9)//scaffold_15:15013876-15013958(+) (9)//scaffold_15:15022995-15023320(-) (11)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70792.1.S1_s_at	A	A1TS	POPTR_0014s04310	POPTR_0014s04310 (11)	scaffold_14:3361260-3362529(-) (11)	NA	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.70792.2.S1_a_at	A	A1TS	POPTR_0002s13620	POPTR_0002s13620 (11)	scaffold_2:10092578-10092927(-) (11)	NA	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.70792.2.S1_at	A	A1TS	POPTR_0002s13620	POPTR_0002s13620 (11)	scaffold_2:10092004-10092545(-) (11)	NA	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.70814.1.S1_s_at	A	A1TS	POPTR_0003s02890	POPTR_0003s02890 (10)	scaffold_3:3024470-3024822(-) (11)	NA	O82155	Dof zinc finger protein DOF1.7	AT1G51700.1	DOF zinc finger protein 1 	LOC_Os01g09720.1	"dof zinc finger domain containing protein, putative"	AC235757_43.1	"Zinc finger, Dof-type AC235757.1 157398-155752 E EGN_Mt090430 200"	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.70832.1.S1_at	A	A1TS	POPTR_0016s10980	POPTR_0016s10980 (11)	scaffold_16:9406362-9409361(-) (11)	NA	Q9SCQ2	E3 ubiquitin-protein ligase UPL7	AT3G53090.2	ubiquitin-protein ligase 7 	LOC_Os03g47949.1	"HECT-domain domain containing protein, expressed"	Medtr2g037340.1	IQ calmodulin-binding region; HECT 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.70836.1.S1_at	A	A1TS	POPTR_0007s12710	POPTR_0007s12710 (11)	scaffold_7:12956437-12957511(+) (11)	NA	Q9NRZ9	Lymphoid-specific helicase	AT5G66750.1	chromatin remodeling 1 	LOC_Os09g27060.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g019900.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.70860.1.A1_at	A	A1TS	POPTR_0009s13930	POPTR_0009s13930 (11)	scaffold_9:11000844-11001209(-) (11)	NA	O88060	Translation initiation factor IF-3	AT1G34360.1	translation initiation factor 3 (IF-3) family protein 	LOC_Os02g01110.1	"translation initiation factor IF-3, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.70877.1.S1_at	A	A1TS	POPTR_0019s09060	POPTR_0019s09060 (11)	scaffold_19:10632029-10633107(-) (11)	NA	Q8R050	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	AT1G18070.2	Translation elongation factor EF1A/initiation factor IF2gamma family protein 	LOC_Os04g20220.1	"elongation factor Tu, putative, expressed"	Medtr4g155550.1	"Translation factor; EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.7088.1.S1_a_at	A	A1TS	POPTR_0003s14620	POPTR_0003s14620 (11)	scaffold_3:14641252-14641323(-) (11)	NA	NA	NA	AT5G41950.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g02270.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7088.1.S1_at	A	A1TS	POPTR_0003s14620	POPTR_0003s14620 (11)	scaffold_3:14640385-14641416(-) (11)	NA	NA	NA	AT5G41950.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g02270.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7088.2.S1_at	A	A1TS	POPTR_0003s14620	POPTR_0003s14620 (10)	scaffold_3:14639972-14640678(-) (10)	NA	NA	NA	AT5G41950.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g02270.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70907.1.S1_at	A	A1TS	POPTR_0005s07500	POPTR_0005s07500 (10)	scaffold_5:5117567-5118242(+) (10)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr3g111140.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70909.1.A1_at	A	A1TS	POPTR_0002s25650	POPTR_0002s25650 (9)	scaffold_2:22721564-22722134(-) (9)	NA	Q54M20	Tetratricopeptide repeat protein 4 homolog	AT1G04130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g53910.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70975.1.S1_s_at	A	A2TS	POPTR_0007s08390	POPTR_0007s08400 (11)//POPTR_0007s08390 (11)	scaffold_7:7158624-7158679(+) (11)//scaffold_7:7198662-7198717(-) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os02g32030.1	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.7100.1.S1_at	A	A1TS	POPTR_0001s10950	POPTR_0001s10950 (11)	scaffold_1:8490413-8491019(+) (11)	NA	Q9M3A3	Protein ABIL2	AT3G49290.2	ABL interactor-like protein 2 	LOC_Os01g37110.1	"ABIL2, putative, expressed"	Medtr3g123660.1	"Protein ABIL2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71009.1.A1_at	A	A1TS	POPTR_0014s04670	POPTR_0014s04670 (11)	scaffold_14:3572880-3573422(+) (11)	NA	NA	NA	AT3G60320.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os10g41310.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g022440.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71010.1.S1_at	A	A1TS	POPTR_0008s10730	POPTR_0008s10730 (11)	scaffold_8:6731886-6732431(-) (11)	NA	Q9LSP8	Calmodulin-binding transcription activator 6	AT3G16940.1	calmodulin binding;transcription regulators 	LOC_Os07g30774.1	"calmodulin-binding transcription activator 5, putative, expressed"	Medtr2g038790.1	IQ calmodulin-binding region; CG-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71012.1.A1_at	A	A1TS	POPTR_0016s02490	POPTR_0016s02490 (11)	scaffold_16:1228966-1230290(+) (11)	NA	Q8S1Z1	Probable U3 small nucleolar RNA-associated protein 11	AT3G60360.1	embryo sac development arrest 14 	LOC_Os01g59500.2	"U3 small nucleolar RNA-associated protein 11, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.71013.1.A1_at	A	A1TS	POPTR_0001s41330	POPTR_0001s41330 (11)	scaffold_1:40947754-40947850(-) (11)	NA	NA	NA	AT4G27460.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os10g35630.1	"cystathionin beta synthase protein, putative, expressed"	Medtr2g014790.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71022.1.S1_at	A	A1TS	POPTR_0002s22860	POPTR_0002s22860 (11)	scaffold_2:19902942-19903529(+) (11)	NA	P93051	Sugar transporter ERD6-like 7	AT2G48020.1	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr8g139840.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.71023.1.S1_at	A	A1TS	POPTR_0014s13910	POPTR_0014s13910 (11)	scaffold_14:10185843-10186317(+) (11)	NA	Q9SIM9	F-box protein ORE9	AT2G42620.1	RNI-like superfamily protein 	LOC_Os06g06050.1	"OsFBL27 - F-box domain and LRR containing protein, expressed"	Medtr4g109790.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7103.1.A1_at	A	A1TS	POPTR_0017s02970	POPTR_0017s02970 (11)	scaffold_17:2134230-2134696(-) (11)	NA	NA	NA	AT1G66330.2	senescence-associated family protein 	LOC_Os05g05600.5	"ATA15 protein, putative, expressed"	Medtr5g086030.1	"ATA15 protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7103.2.A1_a_at	A	A1TS	POPTR_0017s02970	POPTR_0017s02970 (11)	scaffold_17:2135563-2135807(-) (11)	NA	NA	NA	AT1G66330.2	senescence-associated family protein 	LOC_Os05g05600.5	"ATA15 protein, putative, expressed"	Medtr5g086030.1	"ATA15 protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7103.2.A1_at	A	A1MS	POPTR_0017s02970	POPTR_0017s02970 (11)	scaffold_17:2135547-2135895(-) (11)	NA	NA	NA	AT1G66330.2	senescence-associated family protein 	LOC_Os05g05600.5	"ATA15 protein, putative, expressed"	Medtr5g086030.1	"ATA15 protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71031.1.S1_at	A	A1TS	POPTR_0012s02510	POPTR_0012s02510 (11)	scaffold_12:2055330-2056678(-) (11)	NA	P81760	"Thylakoid lumenal 17.4 kDa protein, chloroplastic"	AT5G53490.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35810.1	"thylakoid lumenal protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71047.1.S1_a_at	A	A1TS	POPTR_0013s03350	POPTR_0013s03350 (11)	scaffold_13:2056889-2057032(-) (11)	NA	P29136	Metalloendoproteinase 1	AT1G24140.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr6g009200.1	Peptidoglycan binding-like 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.71047.1.S1_at	A	A1TS	POPTR_0013s03350	POPTR_0013s03350 (9)	scaffold_13:2057181-2057352(-) (9)	NA	P29136	Metalloendoproteinase 1	AT1G24140.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr6g009200.1	Peptidoglycan binding-like 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.71061.1.S1_at	A	A4TS	POPTR_0007s03900	POPTR_0007s03910 (11)//POPTR_0007s03900 (11)//POPTR_0007s03100 (10)//POPTR_0007s03890 (10)	scaffold_7:1784491-1785107(+) (11)//scaffold_7:1785574-1785703(+) (9)//scaffold_7:2313114-2322788(+) (11)//scaffold_7:2322769-2330249(+) (11)//scaffold_7:2330230-2330765(+) (10)	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.71061.2.S1_at	A	A2TS	POPTR_0005s06160	POPTR_0005s06160 (11)//POPTR_0542s00210 (11)	scaffold_5:4053152-4053396(+) (11)//scaffold_542:5372-5616(-) (11)	NA	P25141	Alcohol dehydrogenase 1	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.71066.1.A1_s_at	A	A1TS	POPTR_0014s15710	POPTR_0014s15710 (11)	scaffold_14:11742846-11742898(+) (11)	NA	Q9MB94	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.71066.1.A1_x_at	A	A1TS	POPTR_0014s15710	POPTR_0014s15710 (11)	scaffold_14:11742668-11743160(+) (11)	NA	Q9MB94	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.71066.11.S1_a_at	A	A1TA	POPTR_0016s12290	POPTR_0016s12290 (11)	scaffold_16:11635413-11635500(+) (11)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.71066.2.A1_at	A	A1TS	POPTR_0006s10080	POPTR_0006s10080 (10)	scaffold_6:7488138-7488735(-) (10)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.71066.3.A1_a_at	A	A1TS	POPTR_0002s21750	POPTR_0002s21750 (11)	scaffold_2:18319281-18319520(+) (11)	NA	Q9MB94	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.71066.5.A1_s_at	A	A1TS	POPTR_0010s09960	POPTR_0010s09960 (11)	scaffold_10:10557436-10557735(-) (11)	NA	P32869	"Photosystem I reaction center subunit II, chloroplastic"	AT1G03130.1	photosystem I subunit D-2 	LOC_Os08g44680.1	"photosystem I reaction center subunit II, chloroplast precursor, putative, expressed"	Medtr5g006220.1	Photosystem I protein PsaD 	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
PtpAffx.71066.7.A1_at	A	A1TS	POPTR_0016s12290	POPTR_0016s12290 (11)	scaffold_16:11635177-11635978(-) (11)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.71071.1.S1_s_at	A	A1TS	POPTR_0005s16610	POPTR_0005s16610 (11)	scaffold_5:13587624-13588344(+) (11)	NA	Q6MEW4	"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase"	AT1G22170.1	Phosphoglycerate mutase family protein 	LOC_Os02g51590.1	"phosphoglycerate mutase, putative, expressed"	CU651566_7.1	Phosphoglycerate mutase 1 CU651566.9 30664-34534 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71184.1.S1_s_at	A	A1TS	POPTR_0010s18470	POPTR_0010s18470 (11)	scaffold_10:16697258-16698052(-) (11)	NA	Q9Z160	Conserved oligomeric Golgi complex subunit 1	AT5G16300.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os01g56910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71189.1.A1_a_at	A	A1TS	POPTR_0008s18970	POPTR_0008s18970 (11)	scaffold_8:12951769-12951937(+) (11)	NA	NA	NA	AT1G67850.2	Protein of unknown function (DUF707) 	LOC_Os05g01760.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71189.3.S1_s_at	A	A1TS	POPTR_0010s05730	POPTR_0010s05730 (11)	scaffold_10:7211887-7212697(-) (11)	NA	NA	NA	AT1G67850.2	Protein of unknown function (DUF707) 	LOC_Os01g68260.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71189.4.A1_a_at	A	A1TS	POPTR_0008s18970	POPTR_0008s18970 (11)	scaffold_8:12946095-12948986(+) (11)	NA	NA	NA	AT1G67850.2	Protein of unknown function (DUF707) 	LOC_Os05g01760.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71189.5.A1_at	A	A1MS	POPTR_0008s18970	POPTR_0008s18970 (11)	scaffold_8:12951545-12951752(+) (11)	NA	NA	NA	AT1G67850.2	Protein of unknown function (DUF707) 	LOC_Os05g01760.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71191.2.A1_at	A	A1TS	POPTR_0010s06910	POPTR_0010s06910 (11)	scaffold_10:8145266-8145596(-) (11)	NA	Q9CAG8	F-box/kelch-repeat protein At1g67480	AT1G67480.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g30210.2	"OsFBK7 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71195.1.S1_at	A	A1TS	POPTR_0003s20260	POPTR_0003s20260 (10)	scaffold_3:18789189-18789417(+) (10)	NA	Q0SE35	Glycerol-3-phosphate dehydrogenase [NAD(P)+] 1	AT3G07690.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os01g71280.1	"glycerol-3-phosphate dehydrogenase, putative, expressed"	Medtr4g118340.1	NAD-dependent glycerol-3-phosphate dehydrogenase 	GO:0005975|carbohydrate metabolic process||GO:0055114|oxidation reduction	"GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.71196.1.S1_at	A	A1TS	POPTR_0010s08440	POPTR_0010s08440 (11)	scaffold_10:9346509-9348730(+) (11)	NA	Q9LSW2	Actin-related protein 9	AT5G43500.2	actin-related protein 9 	LOC_Os04g09860.2	"actin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71207.1.S1_at	A	A1TS	POPTR_0007s07630	POPTR_0007s07630 (10)	scaffold_7:5987922-5988550(-) (10)	NA	P51428	"Ribosomal protein S10, mitochondrial"	AT3G22300.1	ribosomal protein S10 	LOC_Os12g33240.3	"mitochondrial ribosomal protein S10, putative, expressed"	Medtr1g006750.1	"Ribosomal protein S10, bacterial form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.71272.1.S1_s_at	A	A1TS	POPTR_0006s19970	POPTR_0006s19970 (11)	scaffold_6:18990781-18991100(+) (11)	NA	Q56X72	Reticulon-like protein B21	AT5G58000.1	Reticulon family protein 	LOC_Os08g17870.1	"reticulon domain containing protein, putative, expressed"	Medtr4g108500.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.71284.1.S1_at	A	A1TS	POPTR_0005s20380	POPTR_0005s20380 (10)	scaffold_5:19427003-19428341(+) (10)	NA	Q9C6Y3	Cyclin-A1-1	AT1G44110.1	Cyclin A1;1 	LOC_Os01g13260.1	"cyclin-A1, putative, expressed"	Medtr4g144920.1	Cyclin-like; ; 	NA	NA	GO:0005634|nucleus
PtpAffx.71291.1.S1_at	A	A1TS	POPTR_0007s15310	POPTR_0007s15310 (11)	scaffold_7:14892011-14892423(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT5G23400.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr3g010430.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.71299.1.S1_at	A	A1MS	POPTR_0015s10580	POPTR_0015s10580 (10)	scaffold_15:11468448-11468926(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71300.1.S1_at	A	A1TS	POPTR_0009s05230	POPTR_0009s05230 (11)	scaffold_9:5367298-5367730(-) (11)	NA	O49508	F-box protein At4g18380	AT4G18380.2	F-box family protein 	LOC_Os05g41130.1	"OsFBX168 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71326.1.S1_at	A	A1TA	POPTR_0017s02070	POPTR_0017s02070 (11)	scaffold_17:1505454-1506013(+) (11)	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os11g38920.2	"HVA22, putative, expressed"	Medtr4g121400.1	"TB2/DP1 and HVA22 related protein; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71332.1.S1_at	A	A1TS	POPTR_0007s09560	POPTR_0007s09560 (11)	scaffold_7:9026005-9026492(-) (11)	NA	NA	NA	AT5G66230.2	Chalcone-flavanone isomerase family protein 	LOC_Os10g42660.1	expressed protein	Medtr8g090020.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71337.1.S1_at	A	A1TS	POPTR_0008s01810	POPTR_0008s01810 (11)	scaffold_8:851627-851908(+) (11)	NA	NA	NA	AT3G10600.1	cationic amino acid transporter 7 	LOC_Os11g05690.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71347.1.A1_at	A	A1TS	POPTR_0001s14130	POPTR_0001s14130 (11)	scaffold_1:11088955-11089253(+) (11)	NA	Q8LAU9	GATA transcription factor 1	AT3G24050.1	GATA transcription factor 1 	LOC_Os02g43150.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g007680.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.71364.1.S1_s_at	A	A1TS	POPTR_0007s06660	POPTR_0007s06660 (11)	scaffold_7:5052332-5052390(-) (11)	NA	Q9D7M8	DNA-directed RNA polymerase II subunit RPB4	AT5G09920.1	"RNA polymerase II, Rpb4, core protein "	LOC_Os02g02510.1	"DNA-directed RNA polymerase II subunit RPB4, putative, expressed"	Medtr8g012340.1	RNA polymerase Rpb4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.71376.1.A1_at	A	A1TS	POPTR_0001s22750	POPTR_0001s22750 (11)	scaffold_1:21646912-21647374(+) (11)	NA	Q9LYT2	Pentatricopeptide repeat-containing protein At3g59040	AT3G59040.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g09270.1	"pentatricopeptide, putative, expressed"	Medtr1g143580.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71377.1.S1_at	A	A1TS	POPTR_0008s05090	POPTR_0008s05090 (11)	scaffold_8:2954727-2955204(+) (11)	NA	B0BN95	Putative nuclease HARBI1	AT3G55350.1	PIF / Ping-Pong family of plant transposases 	LOC_Os11g47650.1	"trp repressor/replication initiator, putative, expressed"	Medtr2g114460.1	"Trp repressor/replication initiator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71383.1.S1_at	A	A1TS	POPTR_0013s15030	POPTR_0013s15030 (10)	scaffold_13:15089580-15090037(-) (10)	NA	O22928	Putative tRNA pseudouridine synthase	AT2G30320.1	Pseudouridine synthase family protein 	LOC_Os03g21980.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr5g082620.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.71388.1.S1_at	A	A1TS	POPTR_0008s19650	POPTR_0008s19650 (9)	scaffold_8:13560265-13560430(+) (9)	NA	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.71397.1.A1_s_at	A	A1TS	POPTR_0007s09930	POPTR_0007s09930 (11)	scaffold_7:9489212-9489738(-) (11)	NA	NA	NA	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g55530.1	"HLS, putative, expressed"	Medtr5g015900.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.71404.1.A1_at	A	A1TS	POPTR_0008s00640	POPTR_0008s00640 (10)	scaffold_8:284814-284848(+) (10)	NA	NA	NA	AT1G50440.3	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os02g03950.3	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g119280.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71404.2.A1_at	A	A1TS	POPTR_0010s25940	POPTR_0010s25940 (11)	scaffold_10:21365438-21366065(-) (11)	NA	NA	NA	AT1G50440.3	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os02g03950.3	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g119280.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71406.1.A1_at	A	A1TS	POPTR_0014s01520	POPTR_0014s01520 (11)	scaffold_14:1452036-1452544(+) (11)	NA	Q8R2N2	Cirhin	AT4G07410.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g52470.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g015510.1	"Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71409.1.A1_s_at	A	A1TS	POPTR_0002s05050	POPTR_0002s05050 (11)	scaffold_2:3252625-3253141(-) (11)	NA	NA	NA	AT1G03080.1	kinase interacting (KIP1-like) family protein 	LOC_Os03g43684.1	"KIP1, putative, expressed"	Medtr1g083940.1	KIP1-like 	NA	NA	GO:0016020|membrane
PtpAffx.71421.1.A1_at	A	A1MS	POPTR_0001s44290	POPTR_0001s44290 (11)	scaffold_1:44751407-44751573(-) (11)	NA	Q9LT47	Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM	AT3G20740.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g04270.3	"WD domain, G-beta repeat domain containing protein, expressed"	AC234703_19.1	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71433.2.A1_a_at	A	A1TS	POPTR_0002s12200	POPTR_0002s12200 (11)	scaffold_2:9043778-9044084(-) (11)	NA	Q9C6B2	Metal transporter Nramp2	AT1G47240.1	NRAMP metal ion transporter 2 	LOC_Os12g39180.1	"natural resistance-associated macrophage protein, putative, expressed"	AC232874_25.1	Natural resistance-associated macrophage protein AC232874.1 75295-80160 E EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.71444.1.A1_at	A	A1TS	POPTR_0001s29750	POPTR_0001s29750 (11)	scaffold_1:28377299-28377729(+) (11)	NA	NA	NA	AT3G19660.1	unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g005490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71469.1.A1_s_at	A	A1TS	POPTR_0003s07610	POPTR_0003s07610 (11)	scaffold_3:9155571-9155729(+) (11)	NA	P49307	Rhizopine catabolism protein mocA	AT4G17370.1	Oxidoreductase family protein 	LOC_Os08g05280.1	"oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed"	Medtr8g105540.1	Bacterial glucose-fructose oxidoreductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.7148.1.S1_a_at	A	A2TS	POPTR_0004s11020	POPTR_0017s14530 (11)//POPTR_0004s11020 (11)	scaffold_17:14556187-14556737(+) (11)//scaffold_4:9629138-9630622(+) (11)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7148.1.S1_at	A	A1TS	POPTR_0004s11020	POPTR_0004s11020 (9)	scaffold_4:9630717-9631003(+) (9)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7148.2.S1_a_at	A	A1TS	POPTR_0017s14530	POPTR_0017s14530 (11)	scaffold_17:14556772-14557122(+) (11)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7148.3.S1_at	A	A1TS	POPTR_0017s14530	POPTR_0017s14530 (10)	scaffold_17:14553564-14553865(+) (10)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71483.1.A1_s_at	A	A1TS	POPTR_0014s13960	POPTR_0014s13960 (11)	scaffold_14:10227044-10227856(+) (11)	NA	NA	NA	AT2G42700.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os11g06810.1	expressed protein	Medtr4g109990.1	Sec1-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.715.1.A1_s_at	A	A2TS	POPTR_0004s14960	POPTR_0004s14960 (11)//POPTR_0009s10650 (9)	scaffold_4:15611466-15612117(-) (11)//scaffold_9:9115037-9115085(-) (9)	NA	Q8VY06	"Presequence protease 2, chloroplastic/mitochondrial"	AT3G19170.1	presequence protease 1 	LOC_Os02g52390.1	"M16 domain containing zinc peptidase, putative, expressed"	AC151525_23.1	"Small acid-soluble spore protein, alpha/beta type; ; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF AC151525.18 114168-104858 E EGN_Mt090430 200"	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.71501.1.S1_at	A	A1TS	POPTR_0003s16070	POPTR_0003s16070 (11)	scaffold_3:15678895-15679729(-) (11)	POPTR_0001s12970 (6)	O23627	"Glycyl-tRNA synthetase 1, mitochondrial"	AT1G29880.1	glycyl-tRNA synthetase / glycine--tRNA ligase 	LOC_Os08g42560.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr3g137760.1	"Glycyl-tRNA synthetase 1, mitochondrial precursor, putative "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.71504.1.S1_a_at	A	A1TS	POPTR_0014s10100	POPTR_0014s10100 (11)	scaffold_14:7578274-7578592(-) (11)	NA	NA	NA	AT3G14430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g41680.1	expressed protein	Medtr3g086130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71505.1.A1_at	A	A1TS	POPTR_0004s11970	POPTR_0004s11970 (11)	scaffold_4:10871329-10871889(+) (11)	NA	Q9S7I6	LRR receptor-like serine/threonine-protein kinase RPK2	AT3G02130.1	receptor-like protein kinase 2 	LOC_Os07g41140.1	"receptor-like protein kinase precursor, putative, expressed"	AC231342_17.1	Tyrosine protein kinase AC231342.3 81719-78663 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.71513.1.S1_at	A	A1MS	POPTR_0008s04940	POPTR_0008s04940 (10)	scaffold_8:2864339-2865116(-) (10)	NA	Q5NA18	Metal tolerance protein 5	AT2G39450.1	Cation efflux family protein 	LOC_Os01g62070.1	"cation efflux family protein, putative, expressed"	Medtr7g022810.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.71516.1.S1_s_at	A	A1TS	POPTR_0006s10290	POPTR_0006s10290 (11)	scaffold_6:7700123-7701614(-) (11)	NA	O80452	AMP deaminase	AT2G38280.2	"AMP deaminase, putative / myoadenylate deaminase, putative "	LOC_Os07g49270.2	"AMP deaminase, putative, expressed"	AC233100_67.1	AMP deaminase AC233100.6 286316-296871 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
PtpAffx.71518.1.S1_s_at	A	A1TS	POPTR_0001s30450	POPTR_0001s30450 (11)	scaffold_1:28909040-28909485(-) (11)	NA	Q9LYZ9	Pentatricopeptide repeat-containing protein At5g02860	AT5G02860.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g40120.1	"pentatricopeptide, putative, expressed"	Medtr2g041460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7152.1.S1_at	A	A1TS	POPTR_0004s06710	POPTR_0004s06710 (11)	scaffold_4:5368227-5368732(-) (11)	NA	Q9LFR1	Probable peptide/nitrate transporter At5g14940	AT5G14940.1	Major facilitator superfamily protein 	LOC_Os06g13210.1	"peptide transporter PTR2, putative, expressed"	Medtr6g009300.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.71524.1.S1_at	A	A1TS	POPTR_0015s08570	POPTR_0015s08570 (11)	scaffold_15:9863184-9863310(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G50000.1	Protein kinase superfamily protein 	LOC_Os05g50190.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.7154.1.S1_at	A	A1TS	POPTR_0017s04970	POPTR_0017s04970 (11)	scaffold_17:3810508-3811392(-) (11)	NA	NA	NA	AT3G07560.1	peroxin 13 	LOC_Os07g05810.1	"glycine-rich protein, putative, expressed"	Medtr2g120540.1	"Glycine-rich protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71549.1.A1_s_at	A	A1TS	POPTR_0008s04230	POPTR_0008s04230 (11)	scaffold_8:2372610-2372739(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.71558.1.S1_at	A	A1TS	POPTR_0005s17040	POPTR_0005s17040 (10)	scaffold_5:14150676-14151497(+) (10)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT5G64970.1	Mitochondrial substrate carrier family protein 	LOC_Os03g09110.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g136730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71559.1.S1_s_at	A	A1TS	POPTR_0019s01710	POPTR_0019s01710 (11)	scaffold_19:1503178-1503699(+) (11)	NA	Q15436	Protein transport protein Sec23A	AT1G05520.1	Sec23/Sec24 protein transport family protein 	LOC_Os11g24560.1	"protein transport protein, putative, expressed"	Medtr3g104400.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.7156.1.A1_s_at	A	A1TS	POPTR_0018s13210	POPTR_0018s13210 (11)	scaffold_18:13614334-13615000(-) (11)	NA	Q84TI7	Sodium transporter HKT1	AT4G10310.1	high-affinity K+ transporter 1 	LOC_Os02g07830.1	"OsHKT1;3 - Na+ transporter, expressed"	Medtr6g092400.1	Cation transporter 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	NA
PtpAffx.7161.1.S1_at	A	A1TS	POPTR_0007s12900	POPTR_0007s12900 (11)	scaffold_7:13103777-13105622(-) (11)	NA	Q9ZPX1	Probable ADP-ribosylation factor At2g18390	AT2G18390.1	ADP-ribosylation factor family protein 	LOC_Os02g22140.1	"ADP-ribosylation factor, putative, expressed"	Medtr8g093220.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.71645.1.S1_at	A	A1TS	POPTR_0006s16220	POPTR_0006s16220 (11)	scaffold_6:14144774-14145887(-) (11)	NA	NA	NA	AT4G13270.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os03g48950.2	expressed protein	Medtr2g123130.1	hypothetical protein 	GO:0009269|response to desiccation	NA	NA
PtpAffx.71648.1.S1_at	A	A1TS	POPTR_0005s02110	POPTR_0005s02110 (11)	scaffold_5:1390569-1391092(+) (11)	NA	O80492	Probable protein phosphatase 2C 5	AT1G09160.1	Protein phosphatase 2C family protein 	LOC_Os07g49040.1	"protein phosphotase protein, putative, expressed"	Medtr7g138020.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7166.1.A1_at	A	A1TS	POPTR_0015s10360	POPTR_0015s10360 (11)	scaffold_15:11317303-11317753(+) (11)	NA	NA	NA	AT3G48500.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g67570.1	"PDE312/PTAC10, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71677.1.S1_a_at	A	A1TS	POPTR_0015s09460	POPTR_0015s09460 (9)	scaffold_15:10681257-10681655(-) (9)	NA	Q5N7W4	DEAD-box ATP-dependent RNA helicase 30	AT5G63120.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g68320.2	"DEAD-box ATP-dependent RNA helicase 30, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.7169.1.A1_at	A	A1TS	POPTR_0001s13110	POPTR_0001s13110 (11)	scaffold_1:10198143-10198600(+) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os11g32110.4	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.717.1.A1_at	A	A2TS	POPTR_0001s42330	POPTR_0001s42330 (11)//POPTR_0001s43900 (10)	scaffold_1:42084626-42085172(+) (11)//scaffold_1:44277933-44278479(+) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.71703.1.S1_at	A	A1TS	POPTR_0019s11000	POPTR_0019s11000 (11)	scaffold_19:12436833-12437723(-) (11)	NA	Q4Z8K6	Ran-binding proteins 9/10 homolog	AT1G35470.2	SPla/RYanodine receptor (SPRY) domain-containing protein 	LOC_Os02g35070.1	"SPRY-domain containing protein, putative, expressed"	Medtr4g033600.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY; Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7171.1.A1_a_at	A	A2TS	POPTR_0009s11340	POPTR_0009s11340 (11)//POPTR_0004s15650 (10)	scaffold_4:16244329-16244363(+) (10)//scaffold_9:9460262-9460296(+) (11)	NA	P0CB17	UPF0497 membrane protein At3g50810	AT3G50810.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g55870.1	"membrane associated DUF588 domain containing protein, putative, expressed"	AC157372_7.1	Protein of unknown function DUF588 AC157372.2 49878-51765 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7171.1.A1_at	A	A1TS	POPTR_0009s11340	POPTR_0009s11340 (9)	scaffold_9:9458988-9460790(+) (9)	NA	P0CB17	UPF0497 membrane protein At3g50810	AT3G50810.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g55870.1	"membrane associated DUF588 domain containing protein, putative, expressed"	AC157372_7.1	Protein of unknown function DUF588 AC157372.2 49878-51765 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71717.1.S1_at	A	A1TS	POPTR_0018s05810	POPTR_0018s05810 (11)	scaffold_18:5445441-5447676(+) (11)	NA	NA	NA	AT3G24506.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17240.1); Has 4864 Blast hits to 709 proteins in 125 species: Archae - 0; Bacteria - 592; Metazoa - 786; Fungi - 33; Plants - 410; Viruses - 61; Other Eukaryotes - 2982 (source: NCBI BLink). 	LOC_Os02g40040.1	expressed protein	Medtr4g009050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7172.2.A1_a_at	A	A1TS	POPTR_0014s01660	POPTR_0014s01660 (11)	scaffold_14:1539378-1540153(-) (11)	NA	P42054	Outer plastidial membrane protein porin	AT5G67500.1	voltage dependent anion channel 2 	LOC_Os03g10510.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.7173.1.A1_at	A	A1TS	POPTR_0006s04310	POPTR_0006s04310 (10)	scaffold_6:2939121-2940450(-) (10)	NA	O14357	N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein gpi1	AT3G57170.1	N-acetylglucosaminyl transferase component family protein / Gpi1 family protein 	LOC_Os05g22370.2	"N-acetylglucosaminyl transferase component, putative, expressed"	Medtr7g107670.1	N-acetylglucosaminyl transferase component 	GO:0006506|GPI anchor biosynthetic process	GO:0017176|phosphatidylinositol N-acetylglucosaminyltransferase activity	GO:0016021|integral to membrane
PtpAffx.7176.1.S1_a_at	A	A1TS	POPTR_0007s04010	POPTR_0007s04010 (11)	scaffold_7:2389194-2390937(-) (11)	NA	Q9DBA9	General transcription factor IIH subunit 1	AT1G55750.1	"BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) "	LOC_Os08g25060.1	"BSD domain-containing protein, putative, expressed"	Medtr1g111760.1	"general transcription factor IIH component, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7177.1.S1_s_at	A	A1TS	POPTR_0010s00410	POPTR_0010s00410 (11)	scaffold_10:200966-201297(+) (11)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT3G17430.1	Nucleotide-sugar transporter family protein 	LOC_Os03g49570.1	"domain of unknown function, DUF250 domain containing protein, expressed"	Medtr8g134090.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71801.1.A1_s_at	A	A1TS	POPTR_0010s23000	POPTR_0010s23000 (11)	scaffold_10:19691895-19692303(-) (11)	NA	Q653H7	Auxin response factor 18	AT4G30080.1	auxin response factor 16 	LOC_Os06g47150.3	"auxin response factor 18, putative, expressed"	Medtr2g110140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.7182.1.A1_at	A	A1TS	POPTR_0008s08090	POPTR_0008s08090 (11)	scaffold_8:5036133-5036421(-) (11)	NA	NA	NA	AT1G79390.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g29320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7182.2.S1_a_at	A	A1TS	POPTR_0008s08090	POPTR_0008s08090 (11)	scaffold_10:16537423-16537464(+) (11)//scaffold_8:5037428-5037469(-) (11)	NA	NA	NA	AT1G79390.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g29320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7182.3.A1_a_at	A	A1TS	POPTR_0008s08090	POPTR_0008s08090 (11)	scaffold_8:5037381-5037564(-) (11)	NA	NA	NA	AT1G79390.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g29320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7182.4.S1_at	A	A1MS	POPTR_0010s18190	POPTR_0010s18190 (11)	scaffold_10:16537399-16537668(+) (11)	NA	NA	NA	AT1G79390.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g29320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7183.2.S1_at	A	A1TS	POPTR_0013s13030	POPTR_0013s13030 (10)	scaffold_13:13599874-13601526(+) (10)	NA	NA	NA	AT2G02960.3	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g66970.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g044040.2	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7185.1.S1_at	A	A1TS	POPTR_0019s11570	POPTR_0019s11570 (10)	scaffold_19:12842399-12842630(-) (10)	NA	NA	NA	AT1G34320.1	Protein of unknown function (DUF668) 	LOC_Os01g65330.1	expressed protein	Medtr4g144270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7188.1.A1_at	A	A1TS	POPTR_0015s08920	POPTR_0015s08920 (10)	scaffold_15:10271835-10272818(+) (10)	POPTR_0012s08390 (6)	Q2VZE7	Protein ApaG	NA	NA	LOC_Os05g07860.1	"uvrB/uvrC motif family protein, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.71884.1.S1_at	A	A1TS	POPTR_0010s03520	POPTR_0010s03520 (9)	scaffold_10:4224667-4225442(+) (9)	NA	O65041	NEDD8-activating enzyme E1 catalytic subunit	AT5G19180.1	E1 C-terminal related 1 	LOC_Os01g16540.1	"NEDD8-activating enzyme E1 catalytic subunit, putative, expressed"	Medtr8g146250.1	"Ubiquitin-activating enzyme, E1 "	GO:0045116|protein neddylation||GO:0044260|cellular macromolecule metabolic process	GO:0016881|acid-amino acid ligase activity||GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.71886.2.S1_at	A	A1TS	POPTR_0012s09290	POPTR_0012s09290 (11)	scaffold_12:10325549-10326054(-) (11)	NA	P54153	Peptide methionine sulfoxide reductase (Fragment)	AT5G61640.1	peptidemethionine sulfoxide reductase 1 	LOC_Os10g41400.1	"peptide methionine sulfoxide reductase, putative, expressed"	AC235753_7.1	Methionine sulfoxide reductase A AC235753.1 37949-37160 F EGN_Mt090430 200	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0055114|oxidation reduction	"GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor"""	NA
PtpAffx.71886.3.S1_a_at	A	A1MS	POPTR_0015s09910	POPTR_0015s09910 (11)	scaffold_15:10973400-10974036(-) (11)	NA	P54153	Peptide methionine sulfoxide reductase (Fragment)	AT5G61640.1	peptidemethionine sulfoxide reductase 1 	LOC_Os10g41400.1	"peptide methionine sulfoxide reductase, putative, expressed"	AC235753_7.1	Methionine sulfoxide reductase A AC235753.1 37949-37160 F EGN_Mt090430 200	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0055114|oxidation reduction	"GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor"""	NA
PtpAffx.71896.1.S1_at	A	A1TA	POPTR_0003s14300	POPTR_0003s14300 (11)	scaffold_3:14404148-14404403(-) (11)	NA	Q84TH9	Protein NLP7	AT4G24020.1	NIN like protein 7 	LOC_Os01g13540.1	"NIN, putative, expressed"	Medtr1g126970.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7190.1.A1_s_at	A	A1TS	POPTR_0005s09300	POPTR_0005s09300 (11)	scaffold_5:6508944-6509173(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT3G19910.1	RING/U-box superfamily protein 	LOC_Os08g43480.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr1g143530.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7190.2.A1_at	A	A1TS	POPTR_0007s07600	POPTR_0007s07600 (11)	scaffold_7:5968213-5968452(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT3G19910.1	RING/U-box superfamily protein 	LOC_Os08g43480.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr1g143530.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71913.1.S1_at	A	A1TS	POPTR_0016s03450	POPTR_0016s03450 (11)	scaffold_16:1822746-1822949(+) (11)	NA	Q5SMQ9	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr7g106430.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.71952.1.S1_s_at	A	A1TS	POPTR_0001s16770	POPTR_0001s16770 (11)	scaffold_1:13543473-13543877(+) (11)	NA	NA	NA	AT1G54120.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g025160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7196.1.S1_at	A	A1TS	POPTR_0006s08840	POPTR_0006s08840 (11)	scaffold_6:6501187-6501555(-) (11)	NA	Q53MB8	Thaumatin-like protein	AT5G02140.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os11g47944.1	"thaumatin, putative"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7199.1.S1_at	A	A1TS	POPTR_0009s12700	POPTR_0009s12700 (9)	scaffold_9:10319022-10319522(+) (9)	NA	NA	NA	NA	NA	LOC_Os02g26960.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7200.1.S1_at	A	A1TS	POPTR_0003s12210	POPTR_0003s12210 (11)	scaffold_3:12871386-12871644(-) (11)	NA	NA	NA	AT4G26965.1	"NADH:ubiquinone oxidoreductase, 17.2kDa subunit "	LOC_Os09g32430.1	"oxidoreductase, putative, expressed"	Medtr3g068850.1	NADH:ubiquinone oxidoreductase 17.2 kD subunit 	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity||GO:0009055|electron carrier activity	GO:0016020|membrane
PtpAffx.72041.1.S1_at	A	A1TS	POPTR_0001s24710	POPTR_0001s24710 (11)	scaffold_1:23952863-23954947(+) (11)	NA	P48491	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
PtpAffx.72045.1.S1_at	A	A1TS	POPTR_0010s19250	POPTR_0010s19250 (9)	scaffold_10:17218081-17218473(-) (11)	NA	P81898	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	AT5G05480.1	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein 	LOC_Os05g32820.1	"peptide-N4-asparagine amidase A, putative, expressed"	Medtr5g090660.1	"Peptide-N4-asparagine amidase A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7205.1.A1_s_at	A	A1TS	POPTR_0012s04260	POPTR_0012s04260 (11)	scaffold_12:3489540-3490348(-) (11)	NA	Q6P4K6	Serine/threonine-protein kinase 11-interacting protein	AT3G17920.1	Outer arm dynein light chain 1 protein 	LOC_Os03g12160.1	"leucine-rich repeat family protein, putative, expressed"	Medtr4g154700.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.721.1.A1_at	A	A1MS	POPTR_0013s07280	POPTR_0013s07280 (11)	scaffold_13:6054698-6055266(+) (11)	NA	Q9P6P3	Serine/threonine-protein kinase ppk15	AT5G35980.1	yeast YAK1-related gene 1 	LOC_Os02g47410.2	"protein kinase, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.7210.1.A1_at	A	A1TS	POPTR_0014s08940	POPTR_0014s08940 (11)	scaffold_14:6615308-6615591(+) (11)	NA	Q6TDP4	Kelch-like protein 17	AT3G61600.2	POZ/BTB containin G-protein 1 	LOC_Os06g31100.1	"E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.7210.2.A1_a_at	A	A2TS	POPTR_0002s16840	POPTR_0002s16840 (11)//POPTR_0014s08940 (11)	scaffold_14:6615027-6615208(+) (11)//scaffold_2:12603225-12603406(+) (11)	NA	Q6TDP4	Kelch-like protein 17	AT3G61600.2	POZ/BTB containin G-protein 1 	LOC_Os06g31100.1	"E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.7210.2.A1_at	A	A1TS	POPTR_0002s16840	POPTR_0002s16840 (11)	scaffold_2:12603262-12603703(+) (11)	NA	Q6TDP4	Kelch-like protein 17	AT3G61600.2	POZ/BTB containin G-protein 1 	LOC_Os06g31100.1	"E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.7213.1.S1_at	A	A1TS	POPTR_0011s02550	POPTR_0011s02550 (11)	scaffold_11:2473677-2474225(+) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT1G30280.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os11g43950.1	"dnaJ domain containing protein, expressed"	Medtr2g056730.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7214.1.S1_s_at	A	A1TS	POPTR_0008s07740	POPTR_0008s07740 (11)	scaffold_8:4753193-4753231(+) (11)	NA	A0JMK9	Chromatin assembly factor 1 subunit A	AT1G65470.1	chromatin assembly factor-1 (FASCIATA1) (FAS1) 	LOC_Os01g67100.1	expressed protein	Medtr7g090120.1	FAS1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72151.1.A1_at	A	A1TS	POPTR_0003s07250	POPTR_0003s07250 (11)	scaffold_3:8835036-8835552(+) (11)	NA	NA	NA	AT4G20030.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g49820.1	"RNA recognition motif family protein, expressed"	Medtr5g079820.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.72161.1.A1_s_at	A	A1TS	POPTR_0007s01150	POPTR_0007s01150 (11)	scaffold_7:620876-621879(+) (11)	NA	Q6DR04	Reticulon-like protein B17	AT2G20590.1	Reticulon family protein 	LOC_Os02g19990.2	"reticulon domain containing protein, putative, expressed"	Medtr4g108500.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.7217.2.S1_a_at	A	A1TS	POPTR_0001s28220	POPTR_0001s28220 (11)	scaffold_1:26992959-26993376(+) (11)	NA	Q86US8	Telomerase-binding protein EST1A	AT5G19400.2	Telomerase activating protein Est1 	LOC_Os08g21350.3	"cig3, putative, expressed"	Medtr5g096600.1	"cig3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72170.1.A1_at	A	A1TS	POPTR_0008s20590	POPTR_0008s20590 (11)	scaffold_8:14347743-14348012(-) (11)	NA	Q9ZT66	"Endo-1,3;1,4-beta-D-glucanase"	AT3G23600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33100.1	"endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed"	Medtr2g026480.1	Dienelactone hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.72170.1.A1_s_at	A	A1TS	POPTR_0008s20590	POPTR_0008s20590 (10)	scaffold_8:14347861-14349390(-) (10)	NA	Q9ZT66	"Endo-1,3;1,4-beta-D-glucanase"	AT3G23600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33100.1	"endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed"	Medtr2g026480.1	Dienelactone hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.72177.1.A1_at	A	A1TS	POPTR_0001s03560	POPTR_0001s03560 (11)	scaffold_1:2847641-2849548(-) (11)	NA	NA	NA	AT1G73060.1	Low  PSII Accumulation 3 	LOC_Os02g02520.1	expressed protein	Medtr4g021740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7218.1.S1_at	A	A1TS	POPTR_0010s07050	POPTR_0010s07050 (11)	scaffold_10:8292014-8293240(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g07520.1	"OsFBX217 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7218.2.S1_s_at	A	A1TS	POPTR_0008s17530	POPTR_0008s17530 (11)	scaffold_8:11802011-11803789(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g07520.1	"OsFBX217 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72180.1.S1_s_at	A	A1TS	POPTR_0007s13560	POPTR_0007s13560 (11)	scaffold_7:13607701-13608117(-) (11)	NA	Q9H0R3	Transmembrane protein 222	AT3G51040.3	RTE1-homolog 	LOC_Os03g58520.1	"green ripe-like, putative, expressed"	Medtr5g021070.1	Protein of unknown function DUF778 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72182.1.A1_at	A	A1TS	POPTR_0002s09060	POPTR_0002s09060 (11)	scaffold_2:6421017-6422076(+) (11)	NA	A9B9L4	Protein grpE	AT1G36390.2	Co-chaperone GrpE family protein 	LOC_Os02g39870.1	"co-chaperone GrpE protein, putative, expressed"	Medtr7g104090.1	"GrpE protein, head "	GO:0006457|protein folding||GO:0030150|protein import into mitochondrial matrix||GO:0044260|cellular macromolecule metabolic process	GO:0000774|adenyl-nucleotide exchange factor activity||GO:0051087|chaperone binding||GO:0042803|protein homodimerization activity	GO:0005739|mitochondrion
PtpAffx.7219.1.A1_s_at	A	A1TS	POPTR_0008s12790	POPTR_0008s12790 (11)	scaffold_8:8274720-8276703(-) (11)	NA	P77938	Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]	AT2G01350.1	quinolinate phoshoribosyltransferase 	LOC_Os09g38060.2	"nicotinate-nucleotide pyrophosphorylase, putative, expressed"	NA	NA	GO:0009435|NAD biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004514|nicotinate-nucleotide diphosphorylase (carboxylating) activity	NA
PtpAffx.72191.1.A1_at	A	A1TS	POPTR_0015s11620	POPTR_0015s11620 (11)	scaffold_15:12167278-12167685(-) (11)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g61740.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr6g025640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.7222.2.S1_s_at	A	A1TS	POPTR_0013s03020	POPTR_0013s03020 (11)	scaffold_13:1837244-1837653(-) (11)	NA	P37707	B2 protein	AT2G32910.1	DCD (Development and Cell Death) domain protein 	LOC_Os02g51140.1	"N-rich protein, putative, expressed"	Medtr3g151330.1	Kelch related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7225.1.S1_s_at	A	A1TS	POPTR_0019s10930	POPTR_0019s10930 (11)	scaffold_19:12401148-12402322(-) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT1G22620.1	Phosphoinositide phosphatase family protein 	LOC_Os08g01750.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7226.1.S1_at	A	A1TS	POPTR_0005s27790	POPTR_0005s27790 (10)	scaffold_5:25284551-25286266(-) (10)	NA	NA	NA	AT2G33620.4	AT hook motif DNA-binding family protein 	LOC_Os08g40150.2	"AT hook motif domain containing protein, expressed"	Medtr8g102740.1	Protein of unknown function DUF296 	NA	GO:0003677|DNA binding	NA
PtpAffx.72296.1.S1_s_at	A	A1TS	POPTR_0013s12760	POPTR_0013s12760 (11)	scaffold_13:13440022-13441093(-) (11)	NA	Q40220	Rac-like GTP-binding protein RAC2	AT5G45970.1	RAC-like 2 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr2g132410.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.723.2.S1_a_at	A	A1TS	POPTR_0009s06220	POPTR_0009s06220 (11)	scaffold_9:6058474-6060047(+) (11)	NA	NA	NA	AT5G13720.1	Uncharacterised protein family (UPF0114) 	LOC_Os07g46330.1	"uncharacterized UPF0114 domain containing protein, expressed"	Medtr5g025800.1	Uncharacterized protein UPF0114 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72314.1.S1_a_at	A	A1TS	POPTR_0009s12770	POPTR_0009s12770 (11)	scaffold_9:10367783-10368778(+) (11)	NA	P73467	Epimerase family protein slr1223	AT2G21280.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g58790.1	"cell division inhibitor, putative, expressed"	Medtr4g097460.1	"NAD-dependent epimerase/dehydratase; Conserved hypothetical protein, YfcH "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.7234.1.S1_at	A	A1TS	POPTR_0002s01900	POPTR_0002s01900 (10)	scaffold_2:1022031-1022876(+) (10)	NA	NA	NA	AT1G20225.1	Thioredoxin superfamily protein 	LOC_Os09g37020.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7237.1.S1_at	A	A1TS	POPTR_0002s20910	POPTR_0002s20910 (11)	scaffold_2:17130097-17130627(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72371.1.S1_at	A	A1TS	POPTR_0001s14510	POPTR_0001s14510 (10)	scaffold_1:11386229-11386603(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7238.1.S1_at	A	A1TS	POPTR_0009s02600	POPTR_0009s02600 (11)	scaffold_9:3379550-3380021(+) (11)	NA	Q8W207	COP9 signalosome complex subunit 2	AT2G26990.1	proteasome family protein 	LOC_Os01g17180.1	"proteasome subunit, putative, expressed"	Medtr7g104290.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7238.2.S1_a_at	A	A2TS	POPTR_0001s23040	POPTR_0001s23040 (11)//POPTR_0009s02600 (11)	scaffold_1:22098306-22099163(-) (11)//scaffold_9:3379081-3379929(+) (11)	NA	Q8W207	COP9 signalosome complex subunit 2	AT2G26990.1	proteasome family protein 	LOC_Os01g17180.1	"proteasome subunit, putative, expressed"	Medtr7g104290.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7238.2.S1_at	A	A1TS	POPTR_0001s23040	POPTR_0001s23040 (10)	scaffold_1:22098200-22098697(-) (10)	NA	Q8W207	COP9 signalosome complex subunit 2	AT2G26990.1	proteasome family protein 	LOC_Os01g17180.1	"proteasome subunit, putative, expressed"	Medtr7g104290.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72383.1.S1_at	A	A1TS	POPTR_0015s07000	POPTR_0015s07000 (10)	scaffold_15:8084142-8084697(-) (10)	NA	NA	NA	AT3G29760.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g01850.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g071320.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72392.1.A1_at	A	A1TS	POPTR_0001s30560	POPTR_0001s30560 (11)	scaffold_1:29049132-29049631(+) (11)	NA	O82333	Probable indole-3-acetic acid-amido synthetase GH3.1	AT2G14960.1	Auxin-responsive GH3 family protein 	LOC_Os07g40290.1	"OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7240.2.A1_s_at	A	A1TS	POPTR_0001s24160	POPTR_0001s24160 (11)	scaffold_1:23521748-23522239(+) (11)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G59750.1	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II 	LOC_Os05g38570.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr2g114380.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
PtpAffx.72440.1.S1_at	A	A1MS	POPTR_0017s08350	POPTR_0017s08350 (9)	scaffold_17:6862981-6863338(+) (9)	NA	Q86AS0	Probable helicase DDB_G0274399	AT4G15570.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr5g069050.1	"DEAD-like helicase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7245.1.A1_a_at	A	A2TS	POPTR_0008s09180	POPTR_0010s17000 (11)//POPTR_0008s09180 (11)	scaffold_10:15765583-15765771(+) (11)//scaffold_8:5683681-5683869(-) (11)	NA	NA	NA	AT1G69390.1	homologue of bacterial MinE 1 	LOC_Os12g31450.1	"plastid division regulator MinE, putative, expressed"	Medtr5g045950.1	"plastid division regulator MinE, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72464.1.S1_at	A	A1TS	POPTR_0015s11370	POPTR_0015s11370 (11)	scaffold_15:11957787-11958167(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT5G50790.1	Nodulin MtN3 family protein 	LOC_Os11g31190.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g150920.1	MtN3 and saliva related transmembrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72480.1.S1_at	A	A1TS	POPTR_0010s25140	POPTR_0010s25140 (11)	scaffold_10:20977746-20978257(+) (11)	NA	Q55C17	"Trans-2,3-enoyl-CoA reductase"	AT5G16010.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os07g06800.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr6g041190.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.7249.1.S1_at	A	A1TS	POPTR_0014s03420	POPTR_0014s03420 (11)	scaffold_14:2759447-2759868(+) (11)	NA	NA	NA	AT2G26530.1	Protein of unknown function (DUF1645) 	LOC_Os02g52380.1	"DUF1645 domain containing protein, putative, expressed"	Medtr4g129240.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72493.1.S1_at	A	A1TS	POPTR_0004s15280	POPTR_0004s15280 (11)	scaffold_4:15941850-15942770(-) (11)	NA	NA	NA	AT1G49510.1	embryo defective 1273 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7251.1.S1_at	A	A1TS	POPTR_0001s31900	POPTR_0001s31900 (11)	scaffold_1:30291267-30291996(+) (11)	NA	O14327	Polyadenylate-binding protein 2	AT5G65260.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g120660.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.72546.1.S1_s_at	A	A1TS	POPTR_0015s08960	POPTR_0015s08960 (11)	scaffold_15:10309575-10310912(+) (11)	NA	O00566	U3 small nucleolar ribonucleoprotein protein MPP10	AT5G66540.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os11g04200.1	"M phase phosphoprotein 10, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72551.1.S1_at	A	A1TS	POPTR_0015s09890	POPTR_0015s09890 (11)	scaffold_15:10969476-10970139(+) (11)	NA	P25803	Vignain	AT5G50260.1	Cysteine proteinases superfamily protein 	LOC_Os08g44270.1	"vignain precursor, putative, expressed"	AC235753_6.1	"Peptidase C1A, papain; AC235753.1 34826-37135 E EGN_Mt090430 200"	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.7256.1.S1_at	A	A1TS	POPTR_0014s13680	POPTR_0014s13680 (11)	scaffold_14:10025938-10026434(-) (11)	NA	Q9LPV9	WD repeat-containing protein LWD1	AT1G12910.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g32430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g099620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7256.2.A1_at	A	A1TS	POPTR_0002s22620	POPTR_0002s22620 (11)	scaffold_2:19382934-19383397(-) (11)	NA	Q9LPV9	WD repeat-containing protein LWD1	AT1G12910.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g32430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g099620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72560.1.S1_at	A	A1TS	POPTR_0006s16380	POPTR_0006s16380 (11)	scaffold_6:14318540-14325438(-) (11)	NA	Q9SVV2	Probable xyloglucan endotransglucosylase/hydrolase protein 26	AT4G28850.1	xyloglucan endotransglucosylase/hydrolase 26 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr4g159420.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.72563.1.S1_s_at	A	A1TS	POPTR_0003s13980	POPTR_0003s13980 (11)	scaffold_3:14203306-14205954(+) (11)	NA	Q8BU04	Putative E3 ubiquitin-protein ligase UBR7	AT4G23860.3	PHD finger protein-related 	LOC_Os06g33810.1	"zinc finger protein, putative, expressed"	Medtr5g009280.1	"Zinc finger, PHD-type; Zinc finger, N-recognin "	NA	GO:0004842|ubiquitin-protein ligase activity||GO:0008270|zinc ion binding	NA
PtpAffx.72597.1.S1_at	A	A1TS	POPTR_0007s07250	POPTR_0007s07250 (11)	scaffold_7:5564292-5566839(-) (11)	NA	Q2TBP5	Transmembrane protein 53	AT3G19970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g51390.2	expressed protein	Medtr5g020580.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7262.1.A1_at	A	A1TS	POPTR_0002s03360	POPTR_0002s03360 (9)	scaffold_2:2079299-2079762(+) (9)	NA	Q2RAC5	Cyclin-T1-3	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72636.1.S1_at	A	A1TS	POPTR_0001s35670	POPTR_0001s35670 (10)	scaffold_1:34012562-34013069(+) (10)	NA	NA	NA	AT5G14410.1	unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72638.1.S1_s_at	A	A1TS	POPTR_0008s10550	POPTR_0008s10550 (11)	scaffold_8:6612684-6613440(-) (11)	NA	Q0WSF1	Aldehyde dehydrogenase 22A1	AT3G66658.2	aldehyde dehydrogenase 22A1 	LOC_Os07g48920.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g038270.1	Aldehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.72685.2.A1_a_at	A	A1TS	POPTR_0011s10060	POPTR_0011s10060 (11)	scaffold_11:12508793-12509238(-) (11)	NA	NA	NA	AT3G29130.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371). 	LOC_Os03g43910.1	expressed protein	Medtr4g136880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72748.1.A1_at	A	A1MS	POPTR_0014s12680	POPTR_0014s12680 (11)	scaffold_14:9320863-9320926(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72771.1.S1_at	A	A1TS	POPTR_0005s24040	POPTR_0005s24040 (11)	scaffold_5:22695325-22696260(-) (11)	NA	Q9M9Y5	Probable galacturonosyltransferase 6	AT1G06780.1	galacturonosyltransferase 6 	LOC_Os11g37980.1	"GAUT2/LGT2, putative, expressed"	Medtr2g033340.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.72774.1.S1_at	A	A1TS	POPTR_0009s08590	POPTR_0009s08590 (11)	scaffold_9:7815019-7816069(-) (11)	NA	Q12296	Protein MAM3	AT2G14520.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g47120.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72779.1.S1_at	A	A1MA	POPTR_0014s17750	POPTR_0014s17750 (11)	scaffold_14:14075545-14075907(-) (11)	NA	Q9LQL2	Nitrate transporter 1.5	AT1G32450.1	nitrate transporter 1.5 	LOC_Os02g48570.1	"peptide transporter PTR2, putative, expressed"	Medtr8g103070.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.728.1.S1_at	A	A1TS	POPTR_0001s27980	POPTR_0001s27980 (11)	scaffold_1:26804586-26805027(+) (11)	NA	NA	NA	AT1G08500.1	early nodulin-like protein 18 	LOC_Os01g17470.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr5g096050.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.728.2.A1_a_at	A	A1TS	POPTR_0009s07160	POPTR_0009s07160 (11)	scaffold_9:6766307-6766587(+) (11)	NA	NA	NA	AT1G08500.1	early nodulin-like protein 18 	LOC_Os01g17470.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr5g096050.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.72800.1.S1_at	A	A1TS	POPTR_0011s03050	POPTR_0011s03050 (9)	scaffold_11:3048468-3048895(-) (9)	NA	NA	NA	AT1G29640.1	"Protein of unknown function, DUF584 "	LOC_Os05g44260.1	"DUF584 domain containing protein, putative, expressed"	Medtr3g068920.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72828.1.S1_s_at	A	A1TS	POPTR_0002s21440	POPTR_0002s21440 (11)	scaffold_2:17940176-17940565(-) (11)	NA	NA	NA	AT4G20720.1	dentin sialophosphoprotein-related 	LOC_Os08g34760.1	expressed protein	Medtr8g074930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7284.1.A1_s_at	A	A1TS	POPTR_0014s15210	POPTR_0014s15210 (11)	scaffold_14:11308954-11310205(+) (11)	NA	Q9SL04	Autophagy-related protein 8d	AT2G05630.1	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7284.3.A1_at	A	A1MS	POPTR_0014s15210	POPTR_0014s15210 (11)	scaffold_14:11308995-11309155(+) (11)	NA	Q9SL04	Autophagy-related protein 8d	AT2G05630.1	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72840.1.S1_at	A	A1MS	POPTR_0014s06750	POPTR_0014s06750 (9)	scaffold_14:5107088-5107258(+) (9)	NA	NA	NA	AT2G45480.1	growth-regulating factor 9 	LOC_Os02g45570.2	"growth regulating factor protein, putative, expressed"	Medtr7g126820.1	QLQ 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.72861.1.S1_at	A	A1TS	POPTR_0005s07700	POPTR_0005s07700 (11)	scaffold_5:5273204-5273690(-) (11)	NA	NA	NA	AT4G39880.1	Ribosomal protein L23/L15e family protein 	LOC_Os07g23244.1	"ribosomal protein L23 family protein, putative, expressed"	Medtr3g101740.1	"Nucleotide-binding, alpha-beta plait "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.7290.1.A1_at	A	A1TS	POPTR_0006s07160	POPTR_0006s07160 (11)	scaffold_6:5141633-5141962(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g043240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72903.1.S1_s_at	A	A1TS	POPTR_0003s22270	POPTR_0003s22270 (11)	scaffold_3:20106816-20107577(-) (11)	NA	NA	NA	AT5G12930.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g31350.1	expressed protein	Medtr2g117870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72911.1.S1_at	A	A1TS	POPTR_0006s04430	POPTR_0006s04430 (11)	scaffold_6:3011065-3011572(-) (11)	NA	O22212	U4/U6 small nuclear ribonucleoprotein PRP4-like protein	AT2G41500.1	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related 	LOC_Os03g23909.1	"vegetative incompatibility protein HET-E-1, putative"	Medtr5g022590.1	Splicing factor motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7292.1.S1_at	A	A1TS	POPTR_0011s02560	POPTR_0011s02560 (11)	scaffold_11:2475487-2475901(-) (11)	NA	NA	NA	AT2G34620.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g57149.1	"mTERF domain containing protein, expressed"	Medtr2g056740.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72945.1.S1_at	A	A1TS	POPTR_0008s15810	POPTR_0008s15810 (9)	scaffold_8:10523550-10524280(-) (9)	NA	P40691	Auxin-induced protein PCNT115	AT1G60680.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g28320.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g140850.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.7295.1.S1_at	A	A1TS	POPTR_0009s02030	POPTR_0009s02030 (9)	scaffold_9:2654991-2655396(+) (9)	NA	NA	NA	AT1G07970.1	"CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). "	LOC_Os03g17950.1	expressed protein	Medtr4g080820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72950.1.S1_at	A	A1TS	POPTR_0006s02170	POPTR_0006s02170 (11)	scaffold_6:1418741-1420593(+) (11)	NA	Q53196	Uncharacterized aminotransferase y4uB	AT3G22200.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g10510.1	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.72961.1.S1_at	A	A1TS	POPTR_0016s07850	POPTR_0016s07850 (11)	scaffold_16:5668670-5669647(-) (11)	NA	O23826	125 kDa kinesin-related protein	AT2G36200.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr7g127790.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.72971.1.S1_at	A	A1TS	POPTR_0018s09560	POPTR_0018s09560 (9)	scaffold_18:10493516-10495115(-) (9)	NA	Q42525	Hexokinase-1	AT4G29130.1	hexokinase 1 	LOC_Os05g45590.1	"hexokinase, putative, expressed"	Medtr4g159960.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.7298.1.A1_s_at	A	A1TS	POPTR_0006s08540	POPTR_0006s08540 (11)	scaffold_6:6219703-6220041(-) (11)	NA	Q6P3R1	Kinesin-like protein KIF22	AT5G02370.1	ATP binding microtubule motor family protein 	LOC_Os05g38480.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g068180.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.72988.1.S1_at	A	A1TS	POPTR_0001s37040	POPTR_0001s37040 (10)	scaffold_1:35859919-35861383(-) (10)	NA	P30181	DNA topoisomerase 1	AT5G55310.1	DNA topoisomerase 1 beta 	LOC_Os08g05840.1	"DNA topoisomerase 1, putative, expressed"	Medtr3g156670.1	Eukaryotic-like DNA topoisomerase I; ; ; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0003917|DNA topoisomerase type I activity	GO:0005694|chromosome
PtpAffx.7299.1.S1_at	A	A1TA	POPTR_0013s01180	POPTR_0013s01180 (10)	scaffold_13:644563-645081(+) (10)	NA	NA	NA	AT5G26910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1); Has 1322 Blast hits to 684 proteins in 162 species: Archae - 4; Bacteria - 497; Metazoa - 157; Fungi - 101; Plants - 155; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink). 	LOC_Os03g19080.3	expressed protein	Medtr2g038920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72999.1.S1_at	A	A1TS	POPTR_0025s00390	POPTR_0025s00390 (11)	scaffold_25:143197-145180(-) (11)	NA	Q52T38	S-acyltransferase TIP1	AT5G20350.1	Ankyrin repeat family protein with DHHC zinc finger domain 	LOC_Os06g43680.1	"palmitoyltransferase TIP1, putative, expressed"	Medtr8g122240.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.730.1.A1_at	A	A1TS	POPTR_0003s18190	POPTR_0003s18190 (11)	scaffold_3:17362940-17364540(-) (11)	NA	Q9SAG8	"Chaperone protein dnaJ 8, chloroplastic"	AT1G80920.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os06g44160.1	"heat shock protein DnaJ, putative, expressed"	Medtr4g021650.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.730.2.S1_at	A	A1TS	POPTR_0001s03470	POPTR_0001s03470 (11)	scaffold_1:2804410-2805741(+) (11)	NA	Q9SAG8	"Chaperone protein dnaJ 8, chloroplastic"	AT1G80920.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os06g44160.1	"heat shock protein DnaJ, putative, expressed"	Medtr4g021650.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.7300.1.S1_at	A	A1TS	POPTR_0001s12480	POPTR_0001s12480 (11)	scaffold_1:9693679-9694935(-) (11)	NA	NA	NA	AT5G44600.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g03470.4	expressed protein	Medtr2g080590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73006.1.S1_s_at	A	A1TS	POPTR_0005s10090	POPTR_0005s10090 (11)	scaffold_5:7188357-7191884(+) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os04g02820.2	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.73006.2.S1_s_at	A	A1TS	POPTR_0005s10090	POPTR_0005s10090 (11)	scaffold_5:7189267-7189647(+) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os04g02820.2	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.73007.1.A1_at	A	A1TS	POPTR_0003s17920	POPTR_0003s17920 (10)	scaffold_3:17160879-17161666(+) (10)	NA	Q9LMP7	Golgi SNARE 11 protein	AT1G15880.1	golgi snare 11 	LOC_Os08g34140.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr4g022490.1	Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7302.1.S1_s_at	A	A1TS	POPTR_0010s12780	POPTR_0010s12780 (11)	scaffold_10:12751753-12753376(-) (11)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT2G01130.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.73020.1.S1_at	A	A1TS	POPTR_0015s13000	POPTR_0015s13000 (11)	scaffold_15:13132884-13134145(+) (11)	POPTR_0012s13100 (6)	P29144	Tripeptidyl-peptidase 2	AT4G20850.1	tripeptidyl peptidase ii 	LOC_Os02g44520.1	"OsSub19 - Putative Subtilisin homologue, expressed"	Medtr1g127030.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.73024.1.S1_at	A	A1TS	POPTR_0003s05510	POPTR_0003s05510 (11)	scaffold_3:6808024-6809710(+) (11)	NA	NA	NA	AT1G52380.1	NUP50 (Nucleoporin 50 kDa) protein 	LOC_Os05g28190.1	"ranBP1 domain containing protein, expressed"	NA	NA	GO:0046907|intracellular transport	NA	NA
PtpAffx.73033.1.S1_at	A	A1TS	POPTR_0015s04760	POPTR_0015s04760 (10)	scaffold_15:4968660-4969061(+) (10)	NA	Q6DR24	Uncharacterized protein At3g17950	AT3G17950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g14530.1	expressed protein	Medtr6g083290.1	"Uncharacterized protein At3g17950, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73048.1.S1_at	A	A1TS	POPTR_0014s08410	POPTR_0014s08410 (11)	scaffold_14:6256851-6256948(-) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT4G00300.2	fringe-related protein 	LOC_Os03g03290.1	"receptor-like protein kinase At3g46290 precursor, putative, expressed"	Medtr7g087930.1	"Probable receptor-like protein kinase At3g46290 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73050.1.S1_s_at	A	A1TS	POPTR_0004s17620	POPTR_0004s17620 (11)	scaffold_4:17745972-17746979(+) (11)	NA	Q3SWX0	Magnesium transporter NIPA2	AT2G21120.1	Protein of unknown function (DUF803) 	LOC_Os05g35570.1	"DUF803 domain containing, putative, expressed"	Medtr4g144260.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.7307.1.S1_at	A	A1TS	POPTR_0001s16090	POPTR_0001s16090 (11)	scaffold_1:12903909-12904819(+) (11)	NA	O82653	GTP-binding protein ERG	AT1G30960.1	GTP-binding family protein 	LOC_Os08g10649.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr5g020320.1	"KH, type 2 "	NA	GO:0003723|RNA binding||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.73070.1.S1_s_at	A	A1TS	POPTR_0012s04260	POPTR_0012s04260 (11)	scaffold_12:3493794-3494156(-) (11)	NA	Q6P4K6	Serine/threonine-protein kinase 11-interacting protein	AT3G17920.1	Outer arm dynein light chain 1 protein 	LOC_Os03g12160.1	"leucine-rich repeat family protein, putative, expressed"	Medtr4g154700.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.7308.1.S1_a_at	A	A1TS	POPTR_0007s06600	POPTR_0007s06600 (11)	scaffold_7:5020624-5021847(+) (11)	NA	Q9Y295	Developmentally-regulated GTP-binding protein 1	AT4G39520.1	GTP-binding protein-related 	LOC_Os07g43470.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.7308.3.S1_at	A	A1TS	POPTR_0007s06600	POPTR_0007s06600 (11)	scaffold_7:5021610-5021772(+) (11)	NA	Q9Y295	Developmentally-regulated GTP-binding protein 1	AT4G39520.1	GTP-binding protein-related 	LOC_Os07g43470.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.7311.1.S1_at	A	A1TS	POPTR_0015s12810	POPTR_0015s12810 (11)	scaffold_15:13026135-13026680(+) (11)	NA	Q9FF86	BAHD acyltransferase DCR	AT5G23940.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g44840.1	"transferase family protein, putative, expressed"	Medtr4g012590.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.7311.2.S1_s_at	A	A1TS	POPTR_0009s15360	POPTR_0009s15360 (11)	scaffold_9:11900076-11900726(-) (11)	NA	P36616	Protein kinase dsk1	AT3G44850.1	Protein kinase superfamily protein 	LOC_Os03g53720.1	"SRPK4, putative, expressed"	Medtr1g073750.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.7311.3.A1_at	A	A1TS	POPTR_0012s12890	POPTR_0012s12890 (11)	scaffold_12:13265651-13266172(+) (11)	NA	Q9FF86	BAHD acyltransferase DCR	AT5G23940.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g44840.1	"transferase family protein, putative, expressed"	Medtr5g089300.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.7316.1.S1_at	A	A1MS	POPTR_0009s02970	POPTR_0009s02970 (11)	scaffold_9:3705944-3706443(+) (11)	NA	NA	NA	AT2G31920.1	Plant protein of unknown function (DUF936) 	LOC_Os09g34110.2	expressed protein	Medtr2g080180.1	"Legume lectin, beta domain; Replication factor-A protein 1, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7318.1.A1_at	A	A1TS	POPTR_0004s11180	POPTR_0004s11180 (9)	scaffold_4:9771537-9772016(-) (9)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.73181.1.A1_at	A	A1TS	POPTR_0019s09090	POPTR_0019s09090 (11)	scaffold_19:10655999-10656262(+) (11)	NA	O24496	Hydroxyacylglutathione hydrolase cytoplasmic	AT3G10850.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os03g21460.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr5g077130.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73188.1.S1_at	A	A1TS	POPTR_0011s17210	POPTR_0011s17210 (9)	scaffold_11:18782084-18790926(-) (9)	NA	NA	NA	AT5G56250.1	hapless 8 	LOC_Os04g39560.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73207.1.S1_at	A	A1TS	POPTR_0009s14590	POPTR_0009s14590 (9)	scaffold_9:11408634-11409073(+) (9)	NA	Q8VWG3	Protein TRANSPARENT TESTA 1	AT1G08290.1	WIP domain protein 3 	LOC_Os06g40960.1	"ZOS6-05 - C2H2 zinc finger protein, expressed"	Medtr2g108030.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.7322.1.S1_at	A	A1TS	POPTR_0003s10380	POPTR_0003s10380 (11)	scaffold_3:11386439-11387611(+) (11)	NA	P20664	DNA primase small subunit	AT5G41880.1	DNA primases;DNA primases 	LOC_Os05g29010.2	"POLA4 - Putative DNA polymerase alpha complex subunit, expressed"	Medtr3g083630.1	"DNA primase, small subunit "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006269|""DNA replication, synthesis of RNA primer"""	GO:0003896|DNA primase activity	NA
PtpAffx.73229.1.S1_at	A	A1TS	POPTR_0013s02760	POPTR_0013s02760 (11)	scaffold_13:1664226-1664467(+) (11)	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr1g099040.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.7326.1.S1_s_at	A	A1TS	POPTR_0004s23820	POPTR_0004s23820 (11)	scaffold_4:22441805-22442246(-) (11)	NA	Q8L5Y6	Cullin-associated NEDD8-dissociated protein 1	AT2G02560.2	cullin-associated and neddylation dissociated 	LOC_Os02g07120.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7326.2.A1_at	A	A1TS	POPTR_0003s00810	POPTR_0003s00810 (11)	scaffold_3:653829-654042(+) (11)	NA	Q8L5Y6	Cullin-associated NEDD8-dissociated protein 1	AT2G02560.2	cullin-associated and neddylation dissociated 	LOC_Os02g07120.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7327.1.S1_s_at	A	A1TS	POPTR_0019s11710	POPTR_0019s11710 (11)	scaffold_19:12951946-12955131(-) (11)	NA	Q7YR70	Angio-associated migratory cell protein	AT1G71840.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g48090.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g134960.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7328.1.A1_at	A	A1TA	POPTR_0002s08400	POPTR_0002s08400 (11)	scaffold_2:5848098-5848654(+) (11)	NA	Q8LLE5	Filament-like plant protein (Fragment)	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os11g06910.2	"myosin heavy chain-related, putative, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73296.1.S1_at	A	A1TS	POPTR_0004s07790	POPTR_0004s07790 (9)	scaffold_4:6398797-6399162(+) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT4G25680.1	PPPDE putative thiol peptidase family protein 	LOC_Os10g38970.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr4g092240.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.733.1.A1_at	A	A1MS	POPTR_0005s12750	POPTR_0005s12750 (10)	scaffold_5:9507742-9508458(-) (10)	NA	P42774	G-box-binding factor 1	AT4G36730.2	G-box binding factor 1 	LOC_Os02g03580.3	"transcription factor, putative, expressed"	Medtr8g093630.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.73309.1.S1_a_at	A	A1TS	POPTR_0010s06920	POPTR_0010s06920 (11)	scaffold_10:8155618-8155694(-) (11)	NA	Q944J0	Probable signal peptidase complex subunit 1	AT4G40042.1	Microsomal signal peptidase 12 kDa subunit (SPC12) 	LOC_Os12g25210.1	"signal peptidase complex subunit 1, putative"	Medtr3g103650.1	"Microsomal signal peptidase 12 kDa subunit; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0044260|cellular macromolecule metabolic process||GO:0006508|proteolysis||GO:0006465|signal peptide processing	GO:0008233|peptidase activity	GO:0005787|signal peptidase complex||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.73309.1.S1_at	A	A1MS	POPTR_0010s06920	POPTR_0010s06920 (11)	scaffold_10:8155126-8155344(-) (11)	NA	Q944J0	Probable signal peptidase complex subunit 1	AT4G40042.1	Microsomal signal peptidase 12 kDa subunit (SPC12) 	LOC_Os12g25210.1	"signal peptidase complex subunit 1, putative"	Medtr3g103650.1	"Microsomal signal peptidase 12 kDa subunit; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0044260|cellular macromolecule metabolic process||GO:0006508|proteolysis||GO:0006465|signal peptide processing	GO:0008233|peptidase activity	GO:0005787|signal peptidase complex||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.73321.1.A1_at	A	A2TS	POPTR_0004s01910	POPTR_0004s01910 (11)//POPTR_0004s01900 (10)	scaffold_4:1162680-1177900(-) (11)//scaffold_4:1167628-1178751(-) (10)	NA	O80690	Beta-glucosidase 46	AT1G61820.1	beta glucosidase 46 	LOC_Os04g43410.1	"Os4bglu18 - monolignol beta-glucoside homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.73338.3.S1_s_at	A	A3TS	POPTR_0001s28750	POPTR_0009s07960 (11)//POPTR_0009s07950 (11)//POPTR_0001s28750 (11)	scaffold_1:27511885-27511920(-) (11)//scaffold_9:7355124-7355159(-) (11)//scaffold_9:7363391-7363426(-) (11)	NA	P93028	Ubiquitin-activating enzyme E1 1	AT2G30110.1	ubiquitin-activating enzyme 1 	LOC_Os11g01510.3	"ubiquitin-activating enzyme, putative, expressed"	Medtr5g080760.1	"Ubiquitin-activating enzyme, E1; Lipase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.73351.1.S1_s_at	A	A1TS	POPTR_0014s03090	POPTR_0014s03090 (11)	scaffold_14:2499099-2500541(-) (11)	NA	Q92539	Phosphatidate phosphatase LPIN2	AT5G42870.1	phosphatidic acid phosphohydrolase 2 	LOC_Os11g40080.1	"lipin, N-terminal conserved region family protein, expressed"	Medtr1g024730.1	"Lipin, N-terminal conserved region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7336.1.A1_at	A	A1TS	POPTR_0011s03100	POPTR_0011s03100 (10)	scaffold_11:3161958-3162575(+) (10)//scaffold_306:1516-2369(+) (10)	POPTR_0306s00200 (7)	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.73363.1.S1_a_at	A	A1TS	POPTR_0014s18550	POPTR_0014s18550 (11)	scaffold_14:15864656-15865440(-) (11)	NA	NA	NA	AT4G28740.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g42800.1	"photosystem-II repair protein, putative, expressed"	Medtr7g130350.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7338.1.S1_at	A	A1TS	POPTR_0014s18520	POPTR_0014s18520 (11)	scaffold_14:15767743-15768582(+) (11)	NA	NA	NA	AT2G20210.1	RNI-like superfamily protein 	LOC_Os12g12740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr7g117920.1	"leucine-rich repeat family protein, related "	NA	GO:0005515|protein binding	NA
PtpAffx.734.1.A1_s_at	A	A1TS	POPTR_0014s15280	POPTR_0014s15280 (10)	scaffold_14:11351183-11351373(-) (10)	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.2	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.1	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr2g006710.1	"Dihydrolipoamide acetyltransferase, long form "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.73409.1.S1_at	A	A1MS	POPTR_0014s13710	POPTR_0014s13710 (11)	scaffold_14:10045517-10045694(+) (11)	NA	Q9NR19	"Acetyl-coenzyme A synthetase, cytoplasmic"	AT5G36880.2	acetyl-CoA synthetase 	LOC_Os02g32490.1	"AMP-binding enzyme, putative, expressed"	Medtr7g099650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.73409.2.S1_s_at	A	A1TS	POPTR_0014s13710	POPTR_0014s13710 (11)	scaffold_14:10046048-10046240(+) (11)	NA	Q9NR19	"Acetyl-coenzyme A synthetase, cytoplasmic"	AT5G36880.2	acetyl-CoA synthetase 	LOC_Os02g32490.1	"AMP-binding enzyme, putative, expressed"	Medtr7g099650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.73409.3.S1_s_at	A	A1TS	POPTR_0014s13710	POPTR_0014s13710 (11)	scaffold_14:10043798-10044175(+) (11)	NA	Q9NR19	"Acetyl-coenzyme A synthetase, cytoplasmic"	AT5G36880.2	acetyl-CoA synthetase 	LOC_Os02g32490.1	"AMP-binding enzyme, putative, expressed"	Medtr7g099650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.73425.1.S1_at	A	A1TS	POPTR_0003s19150	POPTR_0003s19150 (11)	scaffold_3:17939538-17940047(-) (11)	NA	Q9VG40	Probable cytochrome P450 313a4	AT3G14630.1	"cytochrome P450, family 72, subfamily A, polypeptide 9 "	LOC_Os07g45000.1	"cytochrome P450, putative, expressed"	Medtr4g032760.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.73438.1.S1_at	A	A1TS	POPTR_0015s13300	POPTR_0015s13300 (11)	scaffold_15:13317388-13317871(+) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT5G62070.1	IQ-domain 23 	LOC_Os04g48160.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g129280.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73441.1.S1_at	A	A1TS	POPTR_0045s00280	POPTR_0045s00280 (11)	scaffold_1100:3322-3680(-) (10)//scaffold_45:151946-152322(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7346.1.S1_at	A	A1TS	POPTR_0144s00240	POPTR_0144s00240 (11)	scaffold_144:46326-46831(+) (11)//scaffold_19:13463009-13463568(-) (9)//scaffold_19:13494237-13494549(-) (9)//scaffold_19:13808032-13808527(+) (10)//scaffold_19:13876274-13876779(+) (11)	POPTR_0019s12400 (7)	Q9FZB8	Probable LRR receptor-like serine/threonine-protein kinase At1g51810	AT4G29990.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44930.1	"receptor-like protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.735.1.A1_at	A	A1TS	POPTR_0855s00200	POPTR_0855s00200 (11)	scaffold_2:13094824-13095193(+) (9)//scaffold_855:4331-4730(+) (11)	POPTR_0002s17330 (8)//POPTR_0002s17320 (6)	Q1ECI2	Ethylene-responsive transcription factor ERF023	AT1G01250.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g46400.1	"AP2 domain containing protein, expressed"	Medtr5g012990.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.7351.1.S1_at	A	A1TS	POPTR_0009s05750	POPTR_0009s05750 (11)	scaffold_9:5765371-5766181(+) (11)	NA	NA	NA	AT3G20920.1	translocation protein-related 	LOC_Os02g23890.1	"protein transporter, putative, expressed"	Medtr3g080660.1	Translocation protein Sec62 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73510.1.S1_s_at	A	A1TS	POPTR_0015s11690	POPTR_0015s11690 (11)	scaffold_15:12256817-12259419(-) (11)	POPTR_0012s10800 (6)	Q00004	Signal recognition particle 68 kDa protein	AT5G61970.1	signal recognition particle-related / SRP-related 	LOC_Os08g23360.1	"signal recognition particle 68 kDa protein, putative, expressed"	Medtr4g152260.1	"Signal recognition particle 68 kDa protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73516.1.S1_at	A	A1TS	POPTR_0016s12370	POPTR_0016s12370 (9)	scaffold_16:11712852-11713109(+) (9)	NA	Q39963	Probable pyridoxal biosynthesis protein PDX1	AT5G01410.1	Aldolase-type TIM barrel family protein 	LOC_Os11g48080.1	"SOR/SNZ family protein, putative, expressed"	Medtr2g021510.1	Vitamin B6 biosynthesis protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73535.1.S1_at	A	A1TS	POPTR_0015s11280	POPTR_0015s11280 (10)	scaffold_15:11881746-11882023(+) (10)	NA	Q7TNV0	Protein DEK	AT3G48710.1	DEK domain-containing chromatin associated protein 	LOC_Os01g70020.1	"DEK C terminal domain containing protein, expressed"	Medtr3g150850.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7355.1.S1_a_at	A	A1TS	POPTR_0015s14320	POPTR_0015s14320 (11)	scaffold_15:13976206-13976285(-) (11)	NA	Q8GW78	"Clp protease-related protein At4g12060, chloroplastic"	AT4G25370.1	Double Clp-N motif protein 	LOC_Os03g14280.1	"ATP-dependent Clp protease ATP-binding subunit, putative, expressed"	Medtr5g011720.1	"Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.7355.1.S1_at	A	A1TS	POPTR_0015s14320	POPTR_0015s14320 (11)	scaffold_15:13975951-13976098(-) (11)	NA	Q8GW78	"Clp protease-related protein At4g12060, chloroplastic"	AT4G25370.1	Double Clp-N motif protein 	LOC_Os03g14280.1	"ATP-dependent Clp protease ATP-binding subunit, putative, expressed"	Medtr5g011720.1	"Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.7355.2.S1_a_at	A	A2TS	POPTR_0012s14320	POPTR_0012s14320 (11)//POPTR_0015s14320 (11)	scaffold_12:14254673-14256050(-) (11)//scaffold_15:13976086-13977871(-) (11)	NA	Q8GW78	"Clp protease-related protein At4g12060, chloroplastic"	AT4G25370.1	Double Clp-N motif protein 	LOC_Os03g14280.1	"ATP-dependent Clp protease ATP-binding subunit, putative, expressed"	Medtr5g011720.1	"Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.7355.2.S1_at	A	A1TS	POPTR_0012s14320	POPTR_0012s14320 (11)	scaffold_12:14254630-14256019(-) (11)	NA	Q8GW78	"Clp protease-related protein At4g12060, chloroplastic"	AT4G25370.1	Double Clp-N motif protein 	LOC_Os03g14280.1	"ATP-dependent Clp protease ATP-binding subunit, putative, expressed"	Medtr5g011720.1	"Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.73563.1.S1_at	A	A1TS	POPTR_0004s14020	POPTR_0004s14020 (11)	scaffold_4:14482429-14486151(+) (11)	NA	Q8LGH4	Cullin-4	AT5G46210.1	cullin4 	LOC_Os03g57290.1	"cullin, putative, expressed"	Medtr2g024510.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.73579.1.S1_at	A	A1TS	POPTR_0018s13360	POPTR_0018s13360 (11)	scaffold_18:13702663-13703470(+) (11)	NA	NA	NA	AT3G55600.1	Membrane fusion protein Use1 	LOC_Os08g42110.1	expressed protein	AC235758_21.3	"cation exchanger, putative AC235758.1 126561-120942 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73583.1.S1_at	A	A1TS	POPTR_0005s05550	POPTR_0005s05550 (10)	scaffold_5:3670116-3670363(-) (10)	NA	P32294	Auxin-induced protein 22B	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os12g40900.1	"OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed"	AC233668_17.1	AUX/IAA protein AC233668.2 65033-67329 F EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.7359.1.S1_at	A	A1TS	POPTR_0008s11530	POPTR_0008s11530 (11)	scaffold_8:7329884-7330146(+) (11)	NA	NA	NA	AT1G68820.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.736.1.S1_at	A	A1TS	POPTR_0006s26630	POPTR_0006s26630 (11)	scaffold_6:24796091-24796436(+) (11)	NA	NA	NA	AT5G11420.1	"Protein of unknown function, DUF642 "	LOC_Os01g42520.1	expressed protein	Medtr1g013340.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7360.1.S1_at	A	A1TS	POPTR_0016s05430	POPTR_0016s05430 (10)	scaffold_16:3369965-3370456(+) (10)	NA	NA	NA	AT3G20898.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g080740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7362.1.A1_at	A	A1TS	POPTR_0016s11830	POPTR_0016s11830 (11)	scaffold_16:11012030-11012412(-) (11)	NA	NA	NA	AT3G09085.1	Protein of unknown function (DUF962) 	LOC_Os03g15910.1	"membrane protein, putative, expressed"	Medtr8g087780.1	membrane protein-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73626.1.S1_at	A	A1TS	POPTR_0009s01780	POPTR_0009s01780 (11)	scaffold_9:2296601-2299009(+) (11)	NA	Q9SCV4	Beta-galactosidase 8	AT2G28470.1	beta-galactosidase 8 	LOC_Os03g15020.1	"beta-galactosidase precursor, putative, expressed"	Medtr4g081500.1	"Rhodopsin-like GPCR superfamily; D-galactoside/L-rhamnose binding SUEL lectin; Glycoside hydrolase, family 35 "	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.73627.1.S1_at	A	A1MS	POPTR_0006s04240	POPTR_0006s04240 (11)	scaffold_6:2908888-2909285(-) (11)	NA	Q9LZA6	Triacylglycerol lipase SDP1	AT5G04040.1	Patatin-like phospholipase family protein 	LOC_Os01g55650.1	"phospholipase, patatin family, putative, expressed"	Medtr7g107500.1	Patatin; ARF/SAR superfamily 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.7363.1.A1_at	A	A1TS	POPTR_0015s10750	POPTR_0015s10750 (11)	scaffold_15:11574459-11574923(-) (11)	NA	O75643	U5 small nuclear ribonucleoprotein 200 kDa helicase	AT1G20960.2	"U5 small nuclear ribonucleoprotein helicase, putative "	LOC_Os02g01740.1	"U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed"	Medtr2g076960.1	AAA ATPase; Sec63; ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.73634.1.S1_s_at	A	A1TS	POPTR_0002s20210	POPTR_0002s20210 (11)	scaffold_2:16156700-16157541(+) (11)	NA	O81635	Kinesin-4	AT5G27000.1	kinesin 4 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.73635.1.A1_at	A	A1TS	POPTR_0016s10230	POPTR_0016s10230 (11)	scaffold_16:8421469-8421775(+) (11)	NA	Q9M331	Probable peptide/nitrate transporter At3g53960	AT3G53960.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.7365.1.A1_at	A	A1TS	POPTR_0009s14830	POPTR_0009s14830 (11)	scaffold_9:11549562-11549627(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT2G27680.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os09g39390.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.7365.1.A1_s_at	A	A1TS	POPTR_0009s14830	POPTR_0009s14830 (11)	scaffold_9:11549180-11549539(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT2G27680.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os09g39390.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.73676.1.S1_at	A	A1TS	POPTR_0015s04170	POPTR_0015s04170 (11)	scaffold_15:4210212-4211106(-) (11)	NA	NA	NA	AT3G18170.1	Glycosyltransferase family 61 protein 	LOC_Os02g04250.1	"glycosyltransferase, putative, expressed"	Medtr4g155630.2	Protein of unknown function DUF563 	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.73678.1.S1_at	A	A1TS	POPTR_0009s16120	POPTR_0009s16120 (10)	scaffold_9:12326310-12327039(-) (10)	NA	P49104	Ras-related protein Rab-2-B	AT4G35860.1	GTP-binding 2 	LOC_Os02g37420.1	"ras-related protein, putative, expressed"	Medtr6g022720.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.7369.1.A1_at	A	A1TS	POPTR_0009s08510	POPTR_0009s08510 (11)	scaffold_9:7774648-7775147(+) (11)	NA	NA	NA	AT5G64510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g56180.1	expressed protein	Medtr2g010500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73712.1.S1_s_at	A	A1TS	POPTR_0011s04780	POPTR_0011s04780 (11)	scaffold_11:4750665-4751925(+) (11)	NA	P34914	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73714.1.S1_a_at	A	A2TS	POPTR_0009s02000	POPTR_0009s02000 (11)//POPTR_0004s22100 (9)	scaffold_4:21035399-21035563(-) (9)//scaffold_9:2571816-2572001(-) (11)	NA	Q9SKN3	UPF0497 membrane protein At2g28370	AT2G28370.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g10870.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g018930.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.73725.1.S1_at	A	A1TS	POPTR_0007s02860	POPTR_0007s02860 (9)	scaffold_7:1671652-1674665(+) (9)	NA	NA	NA	AT1G11480.1	eukaryotic translation initiation factor-related 	LOC_Os07g36200.1	"eukaryotic translation initiation factor-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73726.1.S1_at	A	A1TS	POPTR_0008s17560	POPTR_0008s17560 (11)	scaffold_8:11830606-11830643(+) (11)	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.7373.1.A1_at	A	A1TS	POPTR_0015s07430	POPTR_0015s07430 (11)	scaffold_15:8631876-8632476(-) (11)	NA	Q9UPY8	Microtubule-associated protein RP/EB family member 3	AT3G47690.1	microtubule end binding protein EB1A 	LOC_Os04g54940.1	"ATEB1A-like microtubule associated protein, putative, expressed"	Medtr8g112510.1	Calponin-like actin-binding; EB1 	NA	GO:0008017|microtubule binding	NA
PtpAffx.73737.1.S1_at	A	A1TS	POPTR_0003s16310	POPTR_0003s16310 (11)	scaffold_3:15884385-15884569(+) (11)	NA	NA	NA	AT3G48800.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os03g63320.1	"SAM domain containing protein, putative, expressed"	Medtr4g152000.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73746.1.S1_s_at	A	A1TS	POPTR_0001s35760	POPTR_0001s35760 (10)	scaffold_1:34105115-34106406(+) (10)	NA	Q8VYR5	"Pentatricopeptide repeat-containing protein At4g35850, mitochondrial"	AT4G35850.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g05320.1	"PPR repeat domain containing protein, putative, expressed"	Medtr6g022770.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73747.1.S1_at	A	A1TS	POPTR_0010s01640	POPTR_0010s01640 (11)	scaffold_10:1836356-1836909(-) (11)	NA	Q9M9W1	60S ribosomal protein L22-2	AT3G05560.3	Ribosomal L22e protein family 	LOC_Os07g47710.1	"60S ribosomal protein L22-2, putative, expressed"	Medtr1g099930.1	Ribosomal L22e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.73756.1.S1_at	A	A1TS	POPTR_0017s12170	POPTR_0017s12170 (9)	scaffold_17:12352928-12353195(+) (9)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.73768.1.S1_s_at	A	A1TS	POPTR_0013s04010	POPTR_0013s04010 (9)	scaffold_13:2630195-2630857(-) (9)	NA	NA	NA	AT1G54460.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73782.1.S1_at	A	A1TS	POPTR_0013s05070	POPTR_0013s05070 (10)	scaffold_13:3590814-3591223(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73803.1.S1_at	A	A1TS	POPTR_0014s13670	POPTR_0014s13670 (9)	scaffold_14:10023199-10023565(+) (9)	NA	NA	NA	AT5G19090.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g52530.1	"heavy metal-associated domain containing protein, expressed"	AC233679_1.1	Heavy metal transport/detoxification protein AC233679.1 2787-4960 E EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.73823.1.S1_s_at	A	A1TS	POPTR_0001s42280	POPTR_0001s42280 (11)	scaffold_1:42028323-42029159(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020890.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.73824.1.S1_at	A	A1TS	POPTR_0008s08650	POPTR_0008s08650 (11)	scaffold_8:5358101-5358766(+) (11)	NA	P42815	Ribonuclease 3	AT1G26820.1	ribonuclease 3 	LOC_Os08g33710.1	"ribonuclease T2 family domain containing protein, expressed"	Medtr5g044330.1	Ribonuclease T2 	NA	GO:0033897|ribonuclease T2 activity||GO:0003723|RNA binding	NA
PtpAffx.73867.1.S1_at	A	A1TS	POPTR_0009s12460	POPTR_0009s12460 (11)	scaffold_9:10170023-10170215(-) (11)	NA	NA	NA	AT4G34630.1	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	NA	NA	Medtr4g096570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73869.1.S1_at	A	A1TS	POPTR_0010s21710	POPTR_0010s21710 (10)	scaffold_10:18884268-18885520(+) (10)	NA	O80634	"PsbP-like protein 2, chloroplastic"	AT2G39470.1	PsbP-like protein 2 	LOC_Os03g17174.1	"PsbP, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.7388.1.S1_at	A	A1MS	POPTR_0018s07010	POPTR_0018s07010 (10)	scaffold_18:7139226-7140110(+) (10)	NA	Q5TKD8	"Thioredoxin-like 2, chloroplastic"	AT4G29670.1	atypical CYS  HIS rich thioredoxin 2 	LOC_Os05g11090.1	"thioredoxin, putative, expressed"	Medtr6g092530.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.7388.2.S1_at	A	A1TS	POPTR_0006s15520	POPTR_0006s15520 (10)	scaffold_6:12949965-12952086(-) (10)	NA	Q5TKD8	"Thioredoxin-like 2, chloroplastic"	AT4G29670.1	atypical CYS  HIS rich thioredoxin 2 	LOC_Os05g11090.1	"thioredoxin, putative, expressed"	Medtr6g092530.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.73883.1.S1_at	A	A1MS	POPTR_0001s31270	POPTR_0001s31270 (10)	scaffold_1:29605250-29605726(+) (10)	NA	Q31R08	GTP-binding protein lepA	AT5G08650.1	Small GTP-binding protein 	LOC_Os02g06300.1	"GTP-binding protein lepA, putative, expressed"	Medtr7g009110.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.7389.1.A1_s_at	A	A1TS	POPTR_0003s02640	POPTR_0003s02640 (11)	scaffold_3:2742050-2742237(+) (11)	NA	Q99PV0	Pre-mRNA-processing-splicing factor 8	AT1G80070.1	Pre-mRNA-processing-splicing factor 	LOC_Os05g07050.1	"pre-mRNA-processing-splicing factor 8, putative, expressed"	Medtr2g126650.1	"Mov34/MPN/PAD-1; PRO8NT; PROCN; PRO, C-terminal "	"GO:0044260|cellular macromolecule metabolic process||GO:0000398|""nuclear mRNA splicing, via spliceosome"""	NA	GO:0005681|spliceosomal complex
PtpAffx.739.1.A1_at	A	A2TS	POPTR_0660s00210	POPTR_0660s00210 (10)//POPTR_0017s04280 (9)	scaffold_17:3310964-3311422(+) (10)//scaffold_660:10029-10495(+) (10)	NA	NA	NA	AT3G59800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43795.2); Has 15361 Blast hits to 8061 proteins in 537 species: Archae - 2; Bacteria - 622; Metazoa - 7561; Fungi - 1246; Plants - 920; Viruses - 49; Other Eukaryotes - 4961 (source: NCBI BLink). 	NA	NA	Medtr4g128250.1	"Protein FAM133B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73910.1.A1_s_at	A	A1TS	POPTR_0008s10550	POPTR_0008s10550 (11)	scaffold_8:6608983-6609021(-) (11)	NA	Q0WSF1	Aldehyde dehydrogenase 22A1	AT3G66658.2	aldehyde dehydrogenase 22A1 	LOC_Os07g48920.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g038270.1	Aldehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.73917.1.S1_at	A	A1TS	POPTR_0002s12610	POPTR_0002s12610 (11)	scaffold_2:9402886-9403378(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.73921.1.A1_at	A	A1TS	POPTR_0016s07630	POPTR_0016s07630 (11)	scaffold_16:5475960-5476878(-) (11)	NA	Q9ZE28	Uncharacterized protein RP120	AT5G22350.1	Protein of unknown function (DUF1022) 	LOC_Os02g33230.1	"nucleoside-diphosphate-sugar epimerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73922.1.S1_s_at	A	A1TS	POPTR_0005s22810	POPTR_0005s22810 (11)	scaffold_5:21700990-21701277(-) (11)	NA	Q9H6S0	Probable ATP-dependent RNA helicase YTHDC2	AT2G30800.1	helicase in vascular tissue and tapetum 	LOC_Os01g56190.1	"HVT1, putative, expressed"	Medtr5g097550.1	"Single-stranded nucleic acid binding R3H; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.73927.1.S1_at	A	A1TS	POPTR_0002s02550	POPTR_0002s02550 (11)	scaffold_2:1446651-1446916(+) (11)	NA	Q69SG5	Endoglucanase 24	AT1G19940.1	glycosyl hydrolase 9B5 	LOC_Os09g36350.1	"endoglucanase, putative, expressed"	Medtr3g156150.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.7393.1.S1_at	A	A1TS	POPTR_0006s03070	POPTR_0006s03070 (11)	scaffold_6:1939973-1940482(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT2G40830.3	RING-H2 finger C1A 	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g095810.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7393.2.S1_at	A	A1TS	POPTR_0016s02910	POPTR_0016s02910 (11)	scaffold_16:1454161-1454663(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT2G40830.3	RING-H2 finger C1A 	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g095810.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7393.3.S1_a_at	A	A1TS	POPTR_0016s02910	POPTR_0016s02910 (11)	scaffold_16:1454981-1455366(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT2G40830.3	RING-H2 finger C1A 	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g095810.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73931.1.S1_at	A	A1MS	POPTR_0014s09690	POPTR_0014s09690 (11)	scaffold_14:7230381-7230878(-) (11)	NA	Q8N0W3	L-fucose kinase	AT1G01220.1	L-fucokinase/GDP-L-fucose pyrophosphorylase 	LOC_Os03g02410.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr7g145710.1	Sugar transporter superfamily; L-fucokinase 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.73932.1.A1_at	A	A1TS	POPTR_0014s07090	POPTR_0014s07090 (11)	scaffold_14:5348372-5349111(-) (11)	NA	P28658	Ataxin-10	AT4G00231.1	ARM repeat superfamily protein 	LOC_Os03g02720.1	expressed protein	Medtr7g083540.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73942.1.S1_at	A	A1TS	POPTR_0002s01300	POPTR_0002s01300 (11)	scaffold_2:688010-688170(+) (11)	NA	NA	NA	AT1G20530.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37520.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7396.1.S1_at	A	A1TS	POPTR_0005s12470	POPTR_0005s12470 (11)	scaffold_5:9233735-9234245(-) (11)	NA	Q8R5L3	Vam6/Vps39-like protein	AT4G36630.1	Vacuolar sorting protein 39 	LOC_Os03g50740.2	"retrotransposon protein, putative, SINE subclass, expressed"	Medtr5g020050.1	"EMB2754 ; binding, putative "	NA	GO:0005083|small GTPase regulator activity	NA
PtpAffx.73960.1.A1_at	A	A1TS	POPTR_0010s05760	POPTR_0010s05760 (9)	scaffold_10:7241742-7242251(+) (10)	NA	Q9FXE4	Probable protein phosphatase 2C 14	AT1G67820.1	Protein phosphatase 2C family protein 	LOC_Os03g18150.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73961.1.A1_s_at	A	A1TS	POPTR_0017s12620	POPTR_0017s12620 (11)	scaffold_17:12825016-12825507(+) (11)	NA	Q84J46	Pentatricopeptide repeat-containing protein At3g29290	AT3G29290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g11310.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015660.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73989.1.S1_at	A	A1MS	POPTR_0003s13020	POPTR_0003s13020 (9)	scaffold_3:13430271-13431013(-) (10)	NA	NA	NA	AT1G75060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g08450.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7399.1.S1_at	A	A1TS	POPTR_0001s10900	POPTR_0001s10900 (11)	scaffold_1:8467028-8467502(+) (11)	NA	Q9XED8	Auxin response factor 9	AT4G23980.2	auxin response factor 9 	LOC_Os04g36054.1	"auxin response factor 9, putative, expressed"	Medtr4g019570.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.73996.1.A1_s_at	A	A1TS	POPTR_0010s08560	POPTR_0010s08560 (11)	scaffold_10:9478516-9478856(-) (11)	NA	Q8VYR4	Cellulose synthase-like protein G2	AT4G24000.1	cellulose synthase like G2 	LOC_Os09g30130.1	"CSLE6 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.740.1.S1_a_at	A	A1TS	POPTR_0005s20180	POPTR_0005s20180 (11)	scaffold_5:19232821-19232917(-) (11)	NA	NA	NA	AT3G63420.2	Ggamma-subunit 1 	LOC_Os02g04520.1	"AGG2, putative, expressed"	Medtr1g083530.1	"AGG2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.740.2.A1_a_at	A	A1TS	POPTR_0005s20180	POPTR_0005s20180 (11)	scaffold_5:19233130-19233504(-) (11)	NA	NA	NA	AT3G63420.2	Ggamma-subunit 1 	LOC_Os02g04520.1	"AGG2, putative, expressed"	Medtr1g083530.1	"AGG2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.740.4.S1_at	A	A1MS	POPTR_0001s11600	POPTR_0001s11600 (10)	scaffold_1:9015074-9015476(+) (10)	NA	Q9SHE8	"Photosystem I reaction center subunit III, chloroplastic"	AT1G31330.1	photosystem I subunit F 	LOC_Os03g56670.2	"photosystem I reaction center subunit III, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
PtpAffx.740.5.S1_at	A	A1MS	POPTR_0002s08200	POPTR_0002s08200 (10)	scaffold_2:5684913-5685167(+) (10)	NA	NA	NA	AT3G63420.2	Ggamma-subunit 1 	LOC_Os02g04520.1	"AGG2, putative, expressed"	Medtr1g083530.1	"AGG2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7400.1.S1_at	A	A1TS	POPTR_0011s14830	POPTR_0011s14830 (11)	scaffold_11:17086727-17087125(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g087110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74004.1.A1_at	A	A1TS	POPTR_0003s12500	POPTR_0003s12500 (11)	scaffold_3:13060478-13060713(-) (11)	NA	Q5E9Q1	KTEL motif-containing protein 1	AT5G23850.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os02g42920.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74005.1.S1_at	A	A1MS	POPTR_0014s07030	POPTR_0014s07030 (9)	scaffold_14:5309656-5310130(-) (9)	NA	Q0KHU5	1-acylglycerophosphocholine O-acyltransferase 1	AT2G45670.1	calcineurin B subunit-related 	LOC_Os06g49790.1	"acyltransferase, putative, expressed"	AC233100_19.1	Calcium-binding EF-hand AC233100.6 72825-70913 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.74008.1.S1_s_at	A	A1TS	POPTR_0004s14820	POPTR_0004s14820 (11)	scaffold_4:15482008-15482740(+) (11)	NA	Q9LJK2	Abscisic acid 8'-hydroxylase 4	AT3G19270.1	"cytochrome P450, family 707, subfamily A, polypeptide 4 "	LOC_Os09g28390.1	"cytochrome P450, putative, expressed"	Medtr4g129760.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.74035.1.S1_s_at	A	A1TS	POPTR_0002s08510	POPTR_0002s08510 (11)	scaffold_2:5946205-5946661(-) (11)	NA	Q4QY64	ATPase family AAA domain-containing protein 5	AT1G77620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g15580.1	"AT hook motif family protein, expressed"	Medtr1g037360.1	"nucleoside-triphosphatase/ nucleotide binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74039.1.A1_at	A	A1TS	POPTR_0019s14930	POPTR_0019s14930 (10)	scaffold_19:15575200-15575262(-) (10)	NA	NA	NA	AT3G51620.2	PAP/OAS1 substrate-binding domain superfamily 	LOC_Os12g02260.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.7406.1.S1_a_at	A	A1TS	POPTR_0007s13630	POPTR_0007s13630 (11)	scaffold_7:13669203-13669747(-) (11)	NA	Q9FVX1	Glutaredoxin-C3	AT1G77370.1	Glutaredoxin family protein 	LOC_Os02g43180.1	"OsGrx_C3 - glutaredoxin subgroup I, expressed"	Medtr5g021000.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.74063.1.A1_s_at	A	A1TS	POPTR_0002s10590	POPTR_0002s10590 (11)	scaffold_2:7684531-7685271(+) (11)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.2	Cysteine proteinases superfamily protein 	LOC_Os05g11770.1	"ulp1 protease family protein, putative, expressed"	Medtr3g149330.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.74066.1.S1_at	A	A1MS	POPTR_0002s03660	POPTR_0002s03660 (11)	scaffold_2:2263321-2263618(-) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G75240.1	homeobox protein 33 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g020380.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Zinc finger, C2H2-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7407.1.S1_at	A	A1TS	POPTR_0001s37210	POPTR_0001s37210 (11)	scaffold_1:36167489-36167566(-) (11)	NA	Q7RTR2	Protein NLRC3	AT5G55540.1	tornado 1 	LOC_Os03g53990.1	expressed protein	Medtr3g076970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74078.1.A1_at	A	A1TS	POPTR_0008s14700	POPTR_0008s14700 (10)	scaffold_8:9755282-9755827(-) (10)	NA	NA	NA	AT1G70280.2	NHL domain-containing protein 	LOC_Os02g49770.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74086.1.A1_at	A	A1TS	POPTR_0006s14380	POPTR_0006s14380 (11)	scaffold_6:11743163-11743704(-) (11)	NA	Q9CAH1	Putative receptor-like protein kinase At1g72540	AT2G05940.1	Protein kinase superfamily protein 	LOC_Os03g08170.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g049150.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.7409.1.S1_at	A	A1TS	POPTR_0015s00920	POPTR_0015s00920 (10)	scaffold_15:528435-528772(-) (10)	NA	P33079	Auxin-induced protein 10A5	AT4G00880.1	SAUR-like auxin-responsive protein family  	LOC_Os10g36703.1	"CPuORF40 - conserved peptide uORF-containing transcript, expressed"	Medtr3g123200.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74101.1.A1_at	A	A1TS	POPTR_0003s13840	POPTR_0003s13840 (9)	scaffold_3:14095269-14095446(-) (9)	NA	Q8H0Y8	Probable WRKY transcription factor 41	AT4G11070.1	WRKY family transcription factor 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.7411.1.A1_at	A	A1TS	POPTR_0010s07850	POPTR_0010s07850 (11)	scaffold_10:8825322-8825417(-) (11)	NA	P31049	Uncharacterized methyltransferase in lpd-3 5'region	AT3G23530.1	Cyclopropane-fatty-acyl-phospholipid synthase 	LOC_Os12g16650.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr1g064910.1	Cyclopropane-fatty-acyl-phospholipid synthase 	GO:0008610|lipid biosynthetic process	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity||GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
PtpAffx.74131.1.A1_at	A	A1TS	POPTR_0003s09370	POPTR_0003s09370 (11)	scaffold_3:10675640-10676117(+) (11)	NA	Q40152	Heat shock factor protein HSF8	AT1G32330.1	heat shock transcription factor A1D 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.742.1.S1_at	A	A1TS	POPTR_0006s06590	POPTR_0006s06590 (11)	scaffold_6:4791818-4793875(+) (11)	NA	Q9LVZ8	Protein LURP-one-related 12	AT3G15810.1	Protein of unknown function (DUF567) 	LOC_Os01g56450.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126520.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74236.1.A1_at	A	A1TS	POPTR_0003s15340	POPTR_0003s15340 (10)	scaffold_3:15156102-15156467(+) (10)	NA	Q797A7	Uncharacterized amino acid permease YfnA	AT2G34960.1	cationic amino acid transporter 5 	LOC_Os01g11160.1	"amino acid permease family protein, putative, expressed"	Medtr4g137890.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74243.1.A1_s_at	A	A1TS	POPTR_0002s13750	POPTR_0002s13750 (11)	scaffold_2:10201787-10202095(+) (11)	NA	Q86BN8	Protein-tyrosine phosphatase mitochondrial 1-like protein	AT2G35680.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os10g41240.1	"dual specificity protein phosphatase, putative, expressed"	Medtr8g105260.2	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.7425.1.S1_a_at	A	A1TS	POPTR_0023s00630	POPTR_0023s00630 (11)	scaffold_23:463290-463418(+) (11)//scaffold_4:12506671-12506799(-) (11)	NA	Q9FKA5	Uncharacterized protein At5g39570	AT5G39570.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g12580.1	"pro-resilin precursor, putative, expressed"	Medtr6g013300.1	"Stress protein DDR48, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74252.1.A1_s_at	A	A1TS	POPTR_0012s07640	POPTR_0012s07640 (11)	scaffold_12:8549756-8550008(-) (11)	NA	NA	NA	AT3G48080.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr3g111260.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.74269.1.S1_at	A	A1TS	POPTR_0005s16460	POPTR_0005s16460 (11)	scaffold_5:13232598-13232939(-) (11)	NA	Q9LM55	F-box/kelch-repeat protein At1g22040	AT1G22040.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g21930.2	"OsFBK21 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g008570.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74276.1.A1_at	A	A1TS	POPTR_0013s02360	POPTR_0013s02360 (9)	scaffold_13:1409331-1410342(-) (9)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT1G09000.1	NPK1-related protein kinase 1 	LOC_Os09g21510.1	"STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr7g139260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.74283.1.A1_at	A	A1TS	POPTR_0013s00880	POPTR_0013s00880 (10)	scaffold_13:445180-445710(-) (10)	NA	Q96321	Importin subunit alpha-1	AT1G09270.2	importin alpha isoform 4 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.743.1.A1_at	A	A1TS	POPTR_0004s18360	POPTR_0004s18360 (11)	scaffold_4:18294395-18295411(-) (11)	NA	NA	NA	AT2G20920.1	Protein of unknown function (DUF3353) 	LOC_Os03g04440.1	expressed protein	Medtr8g115580.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74327.1.S1_at	A	A1MS	POPTR_0014s12420	POPTR_0014s12420 (9)	scaffold_14:9167024-9167897(+) (11)	NA	Q9ASU7	Peter Pan-like protein	AT5G61770.1	PETER PAN-like protein 	LOC_Os03g22350.1	"Brix domain containing protein, putative, expressed"	Medtr4g101100.1	Brix 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7433.1.A1_at	A	A1TS	POPTR_0013s04500	POPTR_0013s04500 (11)	scaffold_13:3088476-3089161(-) (11)	NA	Q9M841	Peroxisome assembly protein 12	AT3G04460.1	peroxin-12 	LOC_Os10g32960.1	"peroxisome assembly protein 12, putative, expressed"	Medtr1g146710.1	"Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
PtpAffx.7433.2.A1_a_at	A	A2TS	POPTR_0013s04500	POPTR_0019s03680 (11)//POPTR_0013s04500 (11)	scaffold_13:3088867-3089204(-) (11)//scaffold_19:3759034-3759379(-) (11)	NA	Q9M841	Peroxisome assembly protein 12	AT3G04460.1	peroxin-12 	LOC_Os10g32960.1	"peroxisome assembly protein 12, putative, expressed"	Medtr1g146710.1	"Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
PtpAffx.7433.2.A1_at	A	A1TS	POPTR_0019s03680	POPTR_0019s03680 (10)	scaffold_19:3758733-3759332(-) (10)	NA	Q9M841	Peroxisome assembly protein 12	AT3G04460.1	peroxin-12 	LOC_Os10g32960.1	"peroxisome assembly protein 12, putative, expressed"	Medtr1g146710.1	"Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
PtpAffx.7435.2.S1_at	A	A1TS	POPTR_0009s06910	POPTR_0009s06910 (11)	scaffold_9:6579901-6580727(+) (11)	NA	Q66GR3	Transcription factor bHLH130	AT2G42280.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr3g030690.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.7437.1.S1_x_at	A	A1TS	POPTR_0011s12340	POPTR_0011s12340 (11)	scaffold_11:15072162-15072322(-) (11)	NA	NA	NA	AT4G27435.1	Protein of unknown function (DUF1218) 	LOC_Os07g27810.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74399.1.S1_s_at	A	A1TS	POPTR_0002s23900	POPTR_0002s23900 (9)	scaffold_2:21382406-21385846(+) (11)	NA	Q8GZB6	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4"	AT5G13960.1	SU(VAR)3-9 homolog 4 	LOC_Os01g70220.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr7g097120.1	SET-related region; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.74415.1.S1_at	A	A1TS	POPTR_0018s00670	POPTR_0018s00670 (9)	scaffold_18:582177-583048(+) (9)	POPTR_0006s25800 (7)	A7SDW5	Eukaryotic translation initiation factor 3 subunit L	AT5G25757.1	RNA polymerase I-associated factor PAF67 	LOC_Os01g12870.1	"eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed"	AC225507_7.1	"Eukaryotic translation initiation factor 3 subunit E-interactingprotein, related AC225507.11 33253-27252 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74428.1.S1_s_at	A	A1TS	POPTR_0006s14760	POPTR_0006s14760 (11)	scaffold_6:12119593-12121262(+) (11)	NA	O81488	PHD finger protein At5g26210	AT5G20510.1	alfin-like 5 	LOC_Os01g66420.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7443.1.S1_a_at	A	A1TS	POPTR_0002s10550	POPTR_0002s10550 (11)	scaffold_2:7644218-7644432(+) (11)	POPTR_0005s17880 (6)	Q8L8Q8	Uncharacterized protein At5g64816	AT5G64816.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g08710.2	"THION26 - Plant thionin family protein precursor, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74457.1.S1_s_at	A	A1TS	POPTR_0010s06560	POPTR_0010s06560 (11)	scaffold_10:7883625-7884230(+) (11)	NA	P25858	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT3G04120.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.74505.1.S1_at	A	A1TS	POPTR_0010s15750	POPTR_0010s15750 (11)	scaffold_10:14877594-14878087(+) (11)	NA	Q9FGZ4	Probable WRKY transcription factor 48	AT5G49520.1	WRKY DNA-binding protein 48 	LOC_Os03g55080.1	"OsWRKY3 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr2g037930.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.74515.1.A1_at	A	A1TS	POPTR_0019s07520	POPTR_0019s07520 (10)	scaffold_19:8545954-8547277(-) (10)	NA	NA	NA	AT5G05310.2	TLC ATP/ADP transporter 	LOC_Os11g02159.2	expressed protein	Medtr1g008710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74520.1.S1_s_at	A	A2TS	POPTR_0004s11500	POPTR_0004s11500 (11)//POPTR_0017s12380 (11)	scaffold_17:12549702-12550128(-) (11)//scaffold_4:10259819-10260286(-) (11)	NA	Q38997	SNF1-related protein kinase catalytic subunit alpha KIN10	AT3G01090.2	SNF1 kinase homolog 10 	LOC_Os05g45420.3	"CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g092160.1	"Ubiquitin-associated; Tyrosine protein kinase; Kinase-associated, C-terminal; "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.74520.2.S1_at	A	A1TS	POPTR_0004s11500	POPTR_0004s11500 (11)	scaffold_4:10259648-10260366(-) (11)	NA	Q38997	SNF1-related protein kinase catalytic subunit alpha KIN10	AT3G01090.2	SNF1 kinase homolog 10 	LOC_Os05g45420.3	"CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g092160.1	"Ubiquitin-associated; Tyrosine protein kinase; Kinase-associated, C-terminal; "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.7454.1.S1_s_at	A	A1TS	POPTR_0018s11290	POPTR_0018s11290 (11)	scaffold_18:12095566-12095715(-) (11)	NA	Q9SWW6	Cellulose synthase A catalytic subunit 7 [UDP-forming]	AT5G17420.1	Cellulose synthase family protein 	LOC_Os09g25490.1	"CESA9 - cellulose synthase, expressed"	Medtr8g145000.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.74542.1.S1_s_at	A	A1TS	POPTR_0007s02440	POPTR_0007s02440 (11)	scaffold_7:1439257-1440717(-) (11)	NA	Q9ZW75	Probable methyltransferase PMT19	AT2G43200.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g36690.4	"dehydration response related protein, putative, expressed"	Medtr7g005780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.7455.1.S1_a_at	A	A1TS	POPTR_0015s05600	POPTR_0015s05600 (9)	scaffold_15:5938409-5938601(+) (9)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G19950.1	RING/U-box superfamily protein 	LOC_Os10g34590.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g143590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7455.2.S1_a_at	A	A1MS	POPTR_0012s03370	POPTR_0012s03370 (11)	scaffold_12:2665419-2665552(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G19950.1	RING/U-box superfamily protein 	LOC_Os10g34590.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g143590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7455.2.S1_at	A	A1MS	POPTR_0012s03370	POPTR_0012s03370 (11)	scaffold_12:2665135-2665331(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G19950.1	RING/U-box superfamily protein 	LOC_Os10g34590.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g143590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7456.1.S1_at	A	A1TS	POPTR_0005s17270	POPTR_0005s17270 (11)	scaffold_5:14531759-14531809(+) (11)	NA	P27608	"Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic"	AT1G22410.1	Class-II DAHP synthetase family protein 	LOC_Os07g42960.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003849|3-deoxy-7-phosphoheptulonate synthase activity	NA
PtpAffx.7456.1.S1_s_at	A	A1TS	POPTR_0005s17270	POPTR_0005s17270 (11)	scaffold_5:14530433-14531973(+) (11)	NA	P27608	"Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic"	AT1G22410.1	Class-II DAHP synthetase family protein 	LOC_Os07g42960.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003849|3-deoxy-7-phosphoheptulonate synthase activity	NA
PtpAffx.7460.1.A1_at	A	A1TS	POPTR_0001s16010	POPTR_0001s16010 (11)	scaffold_1:12843542-12844362(+) (11)	NA	O49434	"Allantoate deiminase, chloroplastic"	AT4G20070.1	allantoate amidohydrolase 	LOC_Os06g45480.1	"hydrolase, putative, expressed"	Medtr4g090150.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.74614.1.S1_at	A	A1TS	POPTR_0018s07200	POPTR_0018s07200 (10)	scaffold_18:7393796-7394337(-) (10)	NA	NA	NA	AT5G20520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41730.1	"OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74614.2.A1_at	A	A1TS	POPTR_0006s14750	POPTR_0006s14750 (11)	scaffold_6:12116041-12116603(+) (11)	NA	P54069	Protein bem46	AT5G20520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41730.2	"OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74614.3.S1_at	A	A1TS	POPTR_0006s14750	POPTR_0006s14750 (9)	scaffold_6:12115427-12116301(+) (9)	NA	P54069	Protein bem46	AT5G20520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41730.2	"OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74614.3.S1_s_at	A	A2TS	POPTR_0006s14750	POPTR_0018s07200 (11)//POPTR_0006s14750 (11)	scaffold_18:7394840-7395450(-) (11)//scaffold_6:12114922-12115545(+) (11)	NA	P54069	Protein bem46	AT5G20520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41730.2	"OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74618.1.A1_at	A	A1TS	POPTR_0030s00240	POPTR_0030s00240 (11)	scaffold_30:53961-54921(+) (11)	NA	NA	NA	AT3G04950.1	CONTAINS InterPro DOMAIN/s: SEC-C motif (InterPro:IPR004027); Has 583 Blast hits to 583 proteins in 248 species: Archae - 0; Bacteria - 488; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). 	LOC_Os06g19480.1	expressed protein	Medtr7g140250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74635.1.S1_at	A	A1TS	POPTR_0016s14160	POPTR_0016s14160 (9)	scaffold_16:13397059-13397420(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74696.1.S1_at	A	A2TS	POPTR_0008s22410	POPTR_0008s22410 (11)//POPTR_0010s01570 (11)	scaffold_10:1784221-1784582(+) (11)//scaffold_8:16899407-16899786(-) (11)	NA	Q39659	Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a	AT3G06860.1	multifunctional protein 2 	LOC_Os01g24680.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr8g138540.1	3-hydroxyacyl-CoA dehydrogenase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.74696.1.S1_s_at	A	A2TS	POPTR_0008s22410	POPTR_0008s22410 (11)//POPTR_0010s01570 (10)	scaffold_10:1784569-1784987(+) (10)//scaffold_8:16898945-16899418(-) (10)	NA	Q39659	Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a	AT3G06860.1	multifunctional protein 2 	LOC_Os01g24680.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr8g138540.1	3-hydroxyacyl-CoA dehydrogenase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.74706.1.A1_at	A	A1TS	POPTR_0010s04670	POPTR_0010s04670 (11)	scaffold_10:5802038-5802145(-) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74706.1.A1_s_at	A	A2TS	POPTR_0010s04670	POPTR_0010s04700 (11)//POPTR_0010s04670 (11)	scaffold_10:5802080-5802885(-) (11)//scaffold_10:5808573-5809457(-) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74719.1.A1_at	A	A1TS	POPTR_0002s17290	POPTR_0002s17290 (11)	scaffold_2:13052803-13053227(+) (11)	NA	O65155	RNA polymerase II transcriptional coactivator KELP	AT4G00980.1	zinc knuckle (CCHC-type) family protein 	LOC_Os01g50960.1	"RNA polymerase II transcriptional coactivator KELP, putative, expressed"	Medtr6g077130.1	"Zinc finger, CCHC-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003713|transcription coactivator activity||GO:0008270|zinc ion binding	NA
PtpAffx.74725.1.S1_at	A	A1TS	POPTR_0011s14590	POPTR_0011s14590 (11)	scaffold_11:16934837-16935336(-) (11)	NA	NA	NA	AT3G12920.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os03g46570.1	"protein binding protein, putative, expressed"	Medtr2g088530.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7473.1.S1_at	A	A1MS	POPTR_0667s00200	POPTR_0667s00200 (10)	scaffold_667:9419-9691(+) (10)	POPTR_0001s20460 (8)	NA	NA	AT5G11970.1	Protein of unknown function (DUF3511) 	LOC_Os05g28840.1	expressed protein	Medtr2g120810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7473.2.S1_at	A	A2TS	POPTR_0667s00200	POPTR_0667s00200 (11)//POPTR_0001s20460 (10)	scaffold_1:18416991-18417569(-) (10)//scaffold_667:9425-10027(+) (11)	NA	NA	NA	AT5G11970.1	Protein of unknown function (DUF3511) 	LOC_Os05g28840.1	expressed protein	Medtr2g120810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7475.1.A1_at	A	A1TS	POPTR_0006s07560	POPTR_0006s07560 (10)	scaffold_6:5476850-5477696(-) (10)	NA	Q80XQ2	TBC1 domain family member 5	AT4G29950.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os08g40620.1	"rabGAP/TBC domain-containing protein, putative, expressed"	Medtr8g129650.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.74769.1.A1_at	A	A2TS	POPTR_0012s12070	POPTR_0012s12070 (11)//POPTR_0012s12050 (10)	scaffold_12:12359853-12362152(+) (11)//scaffold_12:12373296-12375558(+) (11)	NA	Q8TDP1	Ribonuclease H2 subunit C	AT2G39440.1	"CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g07240.1	expressed protein	Medtr8g144740.1	"AGAP011243-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7479.1.S1_at	A	A1TS	POPTR_0006s21970	POPTR_0006s21970 (11)	scaffold_6:20977097-20977882(-) (11)	NA	Q6DW74	"Digalactosyldiacylglycerol synthase 1, chloroplastic"	AT3G11670.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g34000.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr7g084010.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.748.1.S1_at	A	A1TS	POPTR_0018s01830	POPTR_0018s01830 (11)	scaffold_18:1663240-1663639(+) (11)	NA	P31853	"ATP synthase subunit b', chloroplastic"	AT4G32260.1	"ATPase, F0 complex, subunit B/B', bacterial/chloroplast "	LOC_Os03g17070.1	"ATP synthase B chain, chloroplast precursor, putative, expressed"	Medtr3g137480.1	"H+-transporting two-sector ATPase, B/B subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0045263|""proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.74807.1.S1_at	A	A2TS	POPTR_0004s24030	POPTR_0004s24070 (10)//POPTR_0004s24030 (10)	scaffold_4:22732481-22732893(-) (10)//scaffold_4:22802817-22812820(-) (10)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.74829.1.S1_at	A	A1TS	POPTR_0007s11740	POPTR_0007s11740 (11)	scaffold_7:12138575-12139082(-) (11)	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23560.1	methyl esterase 7 	LOC_Os05g30760.1	"esterase, putative, expressed"	Medtr5g018300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7483.1.A1_at	A	A1TS	POPTR_0002s18490	POPTR_0002s18490 (9)	scaffold_2:14390732-14391631(+) (9)	NA	Q9SE96	GEM-like protein 1	AT1G28200.1	FH interacting protein 1 	LOC_Os03g08860.1	"GRAM domain containing protein, expressed"	Medtr2g092150.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74859.1.S1_at	A	A1TS	POPTR_0018s12610	POPTR_0018s12610 (11)	scaffold_18:13150194-13150717(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74927.2.S1_a_at	A	A1TS	POPTR_0012s05340	POPTR_0012s05340 (11)	scaffold_12:4955010-4955410(+) (11)	NA	Q9M886	LOB domain-containing protein 41	AT3G02550.1	LOB domain-containing protein 41 	LOC_Os01g32770.1	"DUF260 domain containing protein, putative, expressed"	Medtr6g020260.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74935.1.S1_at	A	A1TS	POPTR_0006s01710	POPTR_0006s01710 (10)	scaffold_6:1051099-1051900(-) (10)	NA	NA	NA	AT4G16460.3	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74987.1.A1_at	A	A1TS	POPTR_0015s09250	POPTR_0015s09250 (11)	scaffold_15:10500781-10502158(+) (11)	NA	NA	NA	AT3G48210.1	"CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os05g02000.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74993.1.S1_at	A	A1TS	POPTR_0010s09570	POPTR_0010s09570 (10)	scaffold_10:10321214-10321664(-) (10)	NA	P05332	Uncharacterized N-acetyltransferase p20	AT2G32030.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g58010.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr5g006590.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.75018.1.S1_at	A	A1TS	POPTR_0014s07860	POPTR_0014s07860 (11)	scaffold_14:5851124-5851810(+) (11)	NA	Q9M2D2	"UPF0187 protein At3g61320, chloroplastic"	AT3G61320.1	Bestrophin-like protein 	LOC_Os03g01570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75047.1.A1_at	A	A1TS	POPTR_0001s14290	POPTR_0001s14290 (11)	scaffold_1:11242539-11243077(+) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os10g31950.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75061.1.S1_at	A	A1TS	POPTR_0007s07450	POPTR_0007s07450 (10)	scaffold_7:5807126-5807590(+) (10)	NA	Q8GYD9	Probable RNA helicase SDE3	AT1G05460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g06440.2	"RNA helicase SDE3, putative, expressed"	Medtr2g056800.1	"DEAD-like helicase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75078.1.S1_at	A	A1TS	POPTR_0011s11890	POPTR_0011s11890 (11)	scaffold_11:14656890-14657183(-) (11)	NA	NA	NA	AT5G53860.1	embryo defective 2737 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7508.1.S1_a_at	A	A1TS	POPTR_0012s14470	POPTR_0012s14470 (11)	scaffold_12:14342577-14342741(-) (11)	NA	P49200	40S ribosomal protein S20-1	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g14530.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.75081.1.S1_at	A	A1TS	POPTR_0013s01780	POPTR_0013s01780 (10)	scaffold_13:1017948-1018178(-) (10)	NA	NA	NA	AT5G27710.1	unknown protein; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os07g47570.1	expressed protein	Medtr7g138470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75085.1.S1_at	A	A1TS	POPTR_0011s14370	POPTR_0011s14370 (11)	scaffold_11:16809843-16810475(+) (11)	NA	NA	NA	AT3G18510.1	unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g41410.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75093.1.S1_s_at	A	A2TS	POPTR_0004s22090	POPTR_0009s01990 (11)//POPTR_0004s22090 (11)	scaffold_4:21032462-21033393(+) (11)//scaffold_9:2562424-2563324(+) (11)	NA	Q9SE43	Homeobox-leucine zipper protein REVOLUTA	AT5G60690.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os10g33960.2	"START domain containing protein, expressed"	Medtr2g110200.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.75097.1.S1_at	A	A1TS	POPTR_0010s02230	POPTR_0010s02230 (11)	scaffold_10:2579900-2580259(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75111.1.S1_at	A	A1TS	POPTR_0003s07400	POPTR_0003s07400 (11)	scaffold_3:8960390-8962180(-) (11)	NA	Q28BZ2	Histidine triad nucleotide-binding protein 3	AT4G16566.1	histidine triad nucleotide-binding 4 	LOC_Os04g45280.2	"histidine triad family protein, putative, expressed"	Medtr5g012590.1	Histidine triad (HIT) protein; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75119.1.A1_at	A	A1TS	POPTR_0007s06530	POPTR_0007s06530 (11)	scaffold_7:4904258-4904760(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g144910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75119.2.A1_a_at	A	A1TS	POPTR_0007s06530	POPTR_0007s06530 (11)	scaffold_7:4904794-4904969(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g144910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75119.2.A1_at	A	A1TS	POPTR_0007s06530	POPTR_0007s06530 (11)	scaffold_7:4904956-4906793(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g144910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75126.1.S1_at	A	A1TS	POPTR_0001s16010	POPTR_0001s16010 (11)	scaffold_1:12840388-12841630(+) (11)	NA	O49434	"Allantoate deiminase, chloroplastic"	AT4G20070.1	allantoate amidohydrolase 	LOC_Os06g45480.1	"hydrolase, putative, expressed"	Medtr4g090150.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.75129.2.S1_s_at	A	A1TS	POPTR_0008s16790	POPTR_0008s16790 (11)	scaffold_8:11296526-11298288(+) (11)	POPTR_0010s08110 (7)	P42158	Casein kinase I isoform delta-like	AT4G14340.1	casein kinase I 	LOC_Os02g40860.1	"CK1_CaseinKinase_1.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.7514.1.S1_s_at	A	A1TS	POPTR_0015s12110	POPTR_0015s12110 (11)	scaffold_15:12516526-12516711(+) (11)	NA	Q9FLT3	Germin-like protein subfamily 3 member 4	AT5G61750.1	RmlC-like cupins superfamily protein 	LOC_Os11g33110.1	"Cupin domain containing protein, expressed"	Medtr3g143310.1	Cupin region 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.75141.1.S1_at	A	A1TS	POPTR_0001s09280	POPTR_0001s09280 (11)	scaffold_1:7095475-7096441(+) (11)	NA	Q8LBU2	Probable glutathione peroxidase 8	AT1G63460.1	glutathione peroxidase 8 	LOC_Os02g44500.1	"glutathione peroxidase, putative, expressed"	Medtr4g149530.2	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
PtpAffx.75146.1.S1_at	A	A1TS	POPTR_0013s06520	POPTR_0013s06520 (11)	scaffold_13:5119836-5122273(-) (11)	NA	Q9ZVC9	Protein FAR1-RELATED SEQUENCE 3	AT2G27110.2	FAR1-related sequence 3 	LOC_Os08g41840.1	expressed protein	Medtr7g104370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75160.1.A1_at	A	A1TS	POPTR_0016s00810	POPTR_0016s00810 (10)	scaffold_16:303534-303802(+) (10)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT4G16360.3	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os05g41220.1	"SNF1-related protein kinase regulatory subunit beta-1, putative, expressed"	Medtr5g095330.1	"SNF1-related protein kinase regulatory subunit beta-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7517.1.A1_at	A	A1TS	POPTR_0007s14560	POPTR_0007s14560 (10)	scaffold_7:14301537-14301953(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75172.1.A1_at	A	A1TS	POPTR_0008s00850	POPTR_0008s00850 (11)	scaffold_8:400393-400883(+) (11)	NA	Q9LU41	"Calcium-transporting ATPase 9, plasma membrane-type"	AT3G21180.1	autoinhibited Ca(2+)-ATPase 9 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.75189.1.A1_at	A	A1TS	POPTR_0014s11280	POPTR_0014s11280 (9)	scaffold_14:8400173-8400722(+) (9)	NA	NA	NA	AT4G01935.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 37 Blast hits to 37 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os01g14890.1	expressed protein	Medtr1g106300.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75200.1.S1_at	A	A1TS	POPTR_0002s13030	POPTR_0002s13030 (9)	scaffold_2:9688717-9689201(+) (9)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr3g148280.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75213.1.S1_at	A	A1TS	POPTR_0010s02760	POPTR_0010s02760 (9)	scaffold_10:3244779-3245287(+) (10)	NA	O24467	LEC14B homolog	AT4G03020.2	transducin family protein / WD-40 repeat family protein 	LOC_Os05g33710.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g025800.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75226.1.A1_at	A	A1TS	POPTR_0014s12200	POPTR_0014s12200 (11)	scaffold_14:9023549-9024468(+) (11)	NA	P34914	Epoxide hydrolase 2	AT4G02340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g19150.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138740.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75236.1.A1_at	A	A1TS	POPTR_0010s17340	POPTR_0010s17340 (11)	scaffold_10:15970680-15971177(-) (11)	NA	Q8VDP4	Protein KIAA1967 homolog	AT2G03150.1	ATP/GTP-binding protein family 	LOC_Os06g36710.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr5g045140.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75274.1.A1_at	A	A1TS	POPTR_0009s02170	POPTR_0009s02170 (11)	scaffold_9:2877471-2877937(+) (11)	NA	NA	NA	AT5G22090.2	Protein of unknown function (DUF3049) 	LOC_Os03g49830.1	expressed protein	Medtr4g067120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75275.1.A1_at	A	A1TS	POPTR_0004s10300	POPTR_0004s10300 (11)	scaffold_4:8840358-8840887(-) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g57480.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.7528.1.S1_at	A	A1TS	POPTR_0005s11400	POPTR_0005s11400 (11)	scaffold_5:8244104-8245667(+) (11)	NA	NA	NA	AT4G35980.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g28480.1	expressed protein	Medtr8g089480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75314.1.A1_at	A	A1TS	POPTR_0010s04320	POPTR_0010s04320 (11)	scaffold_10:5360582-5360853(-) (11)	NA	Q8H157	Nitrate transporter 1.2	AT1G69850.1	nitrate transporter 1:2 	LOC_Os06g38294.1	"peptide transporter PTR2, putative, expressed"	Medtr5g039420.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.75326.1.A1_at	A	A1MS	POPTR_0010s09910	POPTR_0010s09910 (10)	scaffold_10:10513183-10515312(+) (10)	NA	Q43077	Primary amine oxidase	AT4G14940.1	amine oxidase 1 	LOC_Os06g23114.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr1g132530.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.75330.1.A1_s_at	A	A1TS	POPTR_0005s09200	POPTR_0005s09200 (11)	scaffold_5:6433049-6433776(+) (11)	NA	P32746	"Dihydroorotate dehydrogenase, mitochondrial"	AT5G23300.1	pyrimidine d 	LOC_Os04g57950.1	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr1g143810.1	Dihydroorotate dehydrogenase 2 	GO:0044281|small molecule metabolic process||GO:0006222|UMP biosynthetic process||GO:0055114|oxidation reduction	GO:0004152|dihydroorotate dehydrogenase activity	NA
PtpAffx.7534.1.S1_at	A	A1TS	POPTR_0004s17890	POPTR_0004s17890 (11)	scaffold_4:17939133-17939644(+) (11)	NA	P28493	Pathogenesis-related protein 5	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os08g43510.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75341.1.A1_at	A	A1TS	POPTR_0084s00220	POPTR_0084s00220 (11)	scaffold_84:12706-13050(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75359.1.A1_s_at	A	A1TS	POPTR_0010s09420	POPTR_0010s09420 (11)	scaffold_10:10247772-10248929(-) (11)	NA	Q80YD1	"ATP-dependent RNA helicase SUPV3L1, mitochondrial"	AT4G14790.1	"ATP-dependent RNA helicase, mitochondrial (SUV3) "	LOC_Os03g53500.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g006820.1	"Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.7536.1.S1_at	A	A2TS	POPTR_0011s13530	POPTR_0011s13530 (11)//POPTR_0001s44200 (10)	scaffold_1:44673063-44674255(+) (10)//scaffold_11:16281674-16282848(+) (10)	NA	P46875	Kinesin-3	AT5G54670.1	kinesin 3 	LOC_Os04g53760.2	"kinesin motor domain containing protein, putative, expressed"	Medtr4g111240.1	"Kinesin, motor region "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0007018|microtubule-based movement||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0003777|microtubule motor activity	GO:0005634|nucleus
PtpAffx.7536.2.S1_at	A	A1MS	POPTR_0011s13530	POPTR_0011s13530 (10)	scaffold_11:16282070-16282436(+) (10)	NA	P46875	Kinesin-3	AT5G54670.1	kinesin 3 	LOC_Os04g53760.2	"kinesin motor domain containing protein, putative, expressed"	Medtr4g111240.1	"Kinesin, motor region "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0007018|microtubule-based movement||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0003777|microtubule motor activity	GO:0005634|nucleus
PtpAffx.7536.3.A1_a_at	A	A1MS	POPTR_0002s18820	POPTR_0002s18820 (11)	scaffold_2:14712382-14712510(-) (11)	NA	Q6BQT6	Protein transport protein SEC23	AT4G01810.1	Sec23/Sec24 protein transport family protein 	LOC_Os01g21850.1	"protein transport protein-related, putative, expressed"	Medtr7g134070.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.7536.3.A1_at	A	A1TS	POPTR_0001s44210	POPTR_0001s44210 (10)	scaffold_1:44674120-44674327(-) (10)	NA	Q9XFT3	"Oxygen-evolving enhancer protein 3-1, chloroplastic"	AT3G01440.1	PsbQ-like 1 	LOC_Os07g01480.2	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.75380.1.A1_a_at	A	A1TS	POPTR_0011s09210	POPTR_0011s09210 (11)	scaffold_11:11401209-11401470(-) (11)	NA	A9LNK9	Cleavage and polyadenylation specificity factor CPSF30	AT1G30460.1	cleavage and polyadenylation specificity factor 30 	LOC_Os06g46400.1	"ATCPSF30/CPSF30, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75393.1.S1_at	A	A1TS	POPTR_0007s14830	POPTR_0007s14830 (9)	scaffold_7:14552093-14552412(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.754.1.A1_at	A	A1MS	POPTR_0003s02450	POPTR_0003s02450 (10)	scaffold_3:2541865-2541994(+) (10)	NA	D4N502	Codeine O-demethylase	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08032.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr8g088440.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.754.1.A1_s_at	A	A2TS	POPTR_0003s02450	POPTR_0003s02450 (11)//POPTR_0003s02460 (9)	scaffold_3:2542118-2542302(+) (11)//scaffold_3:2554491-2554675(+) (9)	NA	D4N502	Codeine O-demethylase	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08032.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr8g088440.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.75413.2.A1_a_at	A	A1TS	POPTR_0008s22540	POPTR_0008s22540 (11)	scaffold_8:17144047-17145840(+) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os05g05700.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75432.1.A1_at	A	A1TS	POPTR_0015s00630	POPTR_0015s00630 (9)	scaffold_15:378283-379194(-) (9)	NA	Q7XUA8	IAA-amino acid hydrolase ILR1-like 5	AT5G54140.1	IAA-leucine-resistant (ILR1)-like 3 	LOC_Os04g44110.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.7544.2.A1_s_at	A	A1TS	POPTR_0001s25120	POPTR_0001s25120 (11)	scaffold_1:24340304-24340606(-) (11)	NA	Q9USU9	Transcription initiation factor IIA large subunit	AT1G07470.1	"Transcription factor IIA, alpha/beta subunit "	LOC_Os05g22670.1	"transcription factor IIA large subunit, putative, expressed"	Medtr2g117270.1	"Transcription initiation factor IIA, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005672|transcription factor TFIIA complex
PtpAffx.7544.3.A1_at	A	A1TS	POPTR_0001s25120	POPTR_0001s25120 (11)	scaffold_1:24340060-24340762(-) (11)	NA	Q9USU9	Transcription initiation factor IIA large subunit	AT1G07470.1	"Transcription factor IIA, alpha/beta subunit "	LOC_Os05g22670.1	"transcription factor IIA large subunit, putative, expressed"	Medtr2g117270.1	"Transcription initiation factor IIA, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005672|transcription factor TFIIA complex
PtpAffx.75454.1.A1_at	A	A1TA	POPTR_0005s09290	POPTR_0005s09290 (10)	scaffold_5:6499727-6500164(-) (11)	NA	Q9LT15	Sugar transport protein 10	AT3G19940.1	Major facilitator superfamily protein 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr5g089960.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.75463.1.A1_at	A	A1TS	POPTR_0001s25720	POPTR_0001s25720 (10)	scaffold_1:24768617-24769103(-) (10)	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7547.1.A1_at	A	A1TS	POPTR_0004s24460	POPTR_0004s24460 (11)	scaffold_4:23134979-23135206(+) (11)	NA	Q3SZI7	Conserved oligomeric Golgi complex subunit 6	AT1G31780.1	CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os03g12460.1	"conserved oligomeric complex COG6 family protein, expressed"	Medtr5g025460.1	Conserved oligomeric complex COG6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7547.1.A1_s_at	A	A1TS	POPTR_0004s24460	POPTR_0004s24460 (11)	scaffold_4:23134791-23134978(+) (11)	NA	Q3SZI7	Conserved oligomeric Golgi complex subunit 6	AT1G31780.1	CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os03g12460.1	"conserved oligomeric complex COG6 family protein, expressed"	Medtr5g025460.1	Conserved oligomeric complex COG6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75497.1.A1_at	A	A1TS	POPTR_0019s02220	POPTR_0019s02220 (11)	scaffold_19:2069219-2069727(-) (11)//scaffold_19:2071697-2072183(-) (11)	NA	Q9ZTP3	Protein EIN4	AT3G04580.2	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os04g08740.2	"ethylene receptor, putative, expressed"	Medtr1g093360.1	"Tripartite hybrid signal transduction histidine kinase, BarA type; Bacteriophytochrome "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.75508.1.A1_at	A	A1MS	POPTR_0016s03600	POPTR_0016s03600 (11)	scaffold_16:1947716-1948113(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g106900.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75512.1.A1_at	A	A1TS	POPTR_0001s37120	POPTR_0001s37120 (11)	scaffold_1:35950451-35950692(+) (11)	NA	Q9NS87	Kinesin-like protein KIF15	AT3G20150.1	Kinesin motor family protein 	LOC_Os03g39020.1	"Kinesin motor domain domain containing protein, expressed"	Medtr5g101770.1	"Kinesin, motor region; Kinesin-related "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.75514.1.A1_at	A	A1TS	POPTR_0013s13500	POPTR_0013s13500 (11)	scaffold_13:13967832-13968421(+) (11)	NA	Q9FFY3	Lipid transfer-like protein VAS	AT5G13900.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g47200.2	"LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75526.1.S1_at	A	A1TS	POPTR_0015s11730	POPTR_0015s11730 (11)	scaffold_15:12290615-12291070(+) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr3g151260.1	RNA recognition motif 2 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.75526.2.A1_at	A	A1TS	POPTR_0012s10900	POPTR_0012s10900 (10)	scaffold_12:11581587-11582109(+) (10)//scaffold_12:11606367-11606889(-) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr3g151260.1	RNA recognition motif 2 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.75542.1.A1_at	A	A1TA	POPTR_0006s17990	POPTR_0006s17990 (11)	scaffold_6:16302286-16302715(-) (11)	NA	O64624	Pentatricopeptide repeat-containing protein At2g18940	AT2G18940.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g19380.1	"pentatricopeptide, putative, expressed"	Medtr2g041460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75547.1.A1_at	A	A1TS	POPTR_0008s07650	POPTR_0008s07650 (11)	scaffold_8:4688288-4689421(+) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G59470.2	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr2g118350.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75575.1.A1_at	A	A1TS	POPTR_0010s10190	POPTR_0010s10190 (11)	scaffold_10:10764015-10764504(+) (11)	NA	NA	NA	AT3G06020.1	Protein of unknown function (DUF3049) 	LOC_Os03g49830.1	expressed protein	Medtr5g005940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75575.2.S1_at	A	A1TS	POPTR_0008s14890	POPTR_0008s14890 (11)	scaffold_8:9903958-9904143(-) (11)	NA	NA	NA	AT5G19260.1	Protein of unknown function (DUF3049) 	LOC_Os03g49830.1	expressed protein	Medtr5g005940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75589.1.A1_s_at	A	A1TS	POPTR_0002s09200	POPTR_0002s09200 (11)	scaffold_2:6516490-6517553(+) (11)	NA	NA	NA	AT5G02130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g38330.1	"NDP1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75594.1.A1_s_at	A	A1TS	POPTR_0021s01080	POPTR_0021s01080 (11)	scaffold_21:650255-650413(-) (11)	NA	Q8K1N1	Calcium-independent phospholipase A2-gamma	AT1G61850.2	phospholipases;galactolipases 	LOC_Os07g33670.1	"patatin-like phospholipase family protein, expressed"	Medtr8g146470.1	Patatin 	GO:0006629|lipid metabolic process	GO:0005515|protein binding	NA
PtpAffx.75597.1.A1_at	A	A1TS	POPTR_0008s02590	POPTR_0008s02590 (11)	scaffold_8:1281539-1282046(+) (11)	NA	NA	NA	AT4G40045.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g068520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75599.1.A1_at	A	A1TS	POPTR_0018s08030	POPTR_0018s08030 (10)	scaffold_18:8816098-8816521(+) (10)	NA	NA	NA	AT2G25800.1	Protein of unknown function (DUF810) 	LOC_Os09g17760.1	expressed protein	Medtr3g130600.1	Munc13 homology 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.756.2.S1_a_at	A	A1TS	POPTR_0019s07280	POPTR_0019s07280 (11)	scaffold_19:8265862-8266418(+) (11)	NA	Q5T6J7	Probable gluconokinase	AT2G16790.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	NA	NA	Medtr8g073360.1	"Shikimate kinase; Carbohydrate kinase, thermoresistant glucokinase "	NA	GO:0004765|shikimate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.75600.1.A1_at	A	A1TS	POPTR_0002s13000	POPTR_0002s13000 (9)	scaffold_2:9660615-9660932(+) (9)	NA	NA	NA	AT2G26530.1	Protein of unknown function (DUF1645) 	LOC_Os02g52380.1	"DUF1645 domain containing protein, putative, expressed"	Medtr4g129240.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75603.1.A1_at	A	A1TS	POPTR_0001s33340	POPTR_0001s33340 (11)	scaffold_1:31534086-31534571(+) (11)	NA	Q7G8Y5	Glutaredoxin-C1	AT3G02000.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g027340.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.75618.1.A1_at	A	A1TS	POPTR_0006s23350	POPTR_0006s23350 (10)	scaffold_6:22090906-22091456(-) (10)	NA	Q9Y6D6	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	AT3G43300.1	HOPM interactor 7 	LOC_Os07g37750.1	"ATMIN7, putative, expressed"	Medtr8g133430.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.75622.1.A1_at	A	A1TS	POPTR_0004s17930	POPTR_0004s17930 (11)	scaffold_4:17979188-17979757(+) (11)	NA	Q4I8E9	Protein PNS1	AT4G38640.1	Plasma-membrane choline transporter family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75624.1.A1_at	A	A1TS	POPTR_0005s23320	POPTR_0005s23320 (11)	scaffold_5:22142621-22143160(-) (11)	NA	Q54UI3	tRNA (guanine-N(7)-)-methyltransferase subunit WDR4	AT1G03110.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g53530.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75641.1.A1_at	A	A1MS	POPTR_0005s08410	POPTR_0005s08410 (10)	scaffold_5:5809740-5810247(+) (11)	NA	Q9SV96	"Pentatricopeptide repeat-containing protein At4g39620, chloroplastic"	AT4G39620.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g51480.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g140640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75648.1.A1_at	A	A1TA	POPTR_0005s01290	POPTR_0005s01290 (11)	scaffold_5:553675-553803(+) (11)//scaffold_5:828215-828343(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75662.1.A1_at	A	A1TS	POPTR_0005s11090	POPTR_0005s11090 (11)	scaffold_5:8038862-8040298(+) (11)	NA	NA	NA	AT5G66090.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os09g36990.1	expressed protein	Medtr8g089300.1	hypothetical protein 	GO:0006950|response to stress	NA	NA
PtpAffx.7567.1.S1_at	A	A1TS	POPTR_0002s21340	POPTR_0002s21340 (11)	scaffold_2:17775665-17776398(+) (11)	NA	P40782	Cyprosin (Fragment)	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
PtpAffx.75677.1.A1_at	A	A1TS	POPTR_0007s02150	POPTR_0007s02150 (11)	scaffold_7:1278183-1278478(+) (11)	NA	NA	NA	AT1G05870.4	Protein of unknown function (DUF1685) 	LOC_Os11g17930.1	expressed protein	Medtr1g146930.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75685.1.A1_at	A	A1TS	POPTR_0008s01070	POPTR_0008s01070 (11)	scaffold_8:503482-504680(+) (11)	NA	Q5UPJ7	Tyrosyl-tRNA synthetase	AT2G33840.1	"Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial "	LOC_Os08g05490.1	"tRNA synthetase, putative, expressed"	Medtr1g008380.1	"Aminoacyl-tRNA synthetase, class Ib; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.75687.1.A1_at	A	A1TS	POPTR_0002s26250	POPTR_0002s26250 (11)	scaffold_2:23235637-23236060(-) (11)	NA	Q9UU99	CRAL-TRIO domain-containing protein C23B6.04c	AT1G75170.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g51430.2	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr8g093390.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75688.1.A1_at	A	A1TS	POPTR_0003s09660	POPTR_0003s09660 (11)	scaffold_3:10932084-10932599(-) (11)	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.75692.1.A1_at	A	A1TS	POPTR_0002s20630	POPTR_0002s20630 (11)	scaffold_2:16709295-16709603(+) (11)	NA	Q9ASU7	Peter Pan-like protein	AT5G61770.3	PETER PAN-like protein 	LOC_Os03g22350.1	"Brix domain containing protein, putative, expressed"	Medtr4g101100.1	Brix 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75692.2.A1_at	A	A1TS	POPTR_0014s12420	POPTR_0014s12420 (10)	scaffold_14:9169319-9170232(+) (10)	NA	Q9ASU7	Peter Pan-like protein	AT5G61770.1	PETER PAN-like protein 	LOC_Os03g22350.1	"Brix domain containing protein, putative, expressed"	Medtr4g101100.1	Brix 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75698.2.A1_a_at	A	A1TS	POPTR_0067s00230	POPTR_0067s00230 (11)	scaffold_67:33571-34201(-) (11)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.75704.1.S1_at	A	A1TS	POPTR_0005s08580	POPTR_0005s08580 (9)	scaffold_5:5974539-5975043(-) (9)	NA	NA	NA	AT5G64880.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr3g144910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75729.1.A1_at	A	A1TS	POPTR_0015s11280	POPTR_0015s11280 (11)	scaffold_15:11884151-11884465(+) (11)	NA	Q7TNV0	Protein DEK	AT3G48710.1	DEK domain-containing chromatin associated protein 	LOC_Os01g70020.1	"DEK C terminal domain containing protein, expressed"	Medtr3g150850.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75746.1.A1_at	A	A1TS	POPTR_0001s30340	POPTR_0001s30340 (9)	scaffold_1:28847794-28848247(+) (9)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g55450.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75758.2.A1_at	A	A1TS	POPTR_0005s24830	POPTR_0005s24830 (11)	scaffold_5:23256965-23257109(+) (11)	NA	Q3EDJ0	ABC transporter I family member 19	AT1G03905.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g56550.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g102810.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.75758.2.A1_s_at	A	A2TS	POPTR_0002s03760	POPTR_0002s03760 (11)//POPTR_0005s24830 (11)	scaffold_2:2340461-2341818(-) (11)//scaffold_5:23255807-23257154(+) (11)	NA	Q3EDJ0	ABC transporter I family member 19	AT1G03905.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g56550.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g102810.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.75776.1.A1_at	A	A1TS	POPTR_0009s13940	POPTR_0009s13940 (11)	scaffold_9:11005948-11006284(-) (11)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.75787.1.A1_at	A	A1MS	POPTR_0003s16090	POPTR_0003s16090 (11)	scaffold_3:15701691-15701787(-) (11)	NA	Q9LYU3	Ethylene-responsive transcription factor ERF113	AT5G13330.1	related to AP2 6l 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr7g020790.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.75787.1.A1_s_at	A	A1TS	POPTR_0003s16090	POPTR_0003s16090 (11)	scaffold_3:15701496-15701924(-) (11)	NA	Q9LYU3	Ethylene-responsive transcription factor ERF113	AT5G13330.1	related to AP2 6l 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr7g020790.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.75787.2.A1_at	A	A1TS	POPTR_0001s12990	POPTR_0001s12990 (11)	scaffold_1:10082205-10082362(-) (11)	NA	Q9LYU3	Ethylene-responsive transcription factor ERF113	AT5G13330.1	related to AP2 6l 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr7g020790.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.75787.2.A1_s_at	A	A1TS	POPTR_0001s12990	POPTR_0001s12990 (11)	scaffold_1:10082398-10082700(-) (11)	NA	Q9LYU3	Ethylene-responsive transcription factor ERF113	AT5G13330.1	related to AP2 6l 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr7g020790.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.75792.1.A1_at	A	A2TS	POPTR_0010s02480	POPTR_0034s00220 (11)//POPTR_0010s02480 (11)	scaffold_10:2863566-2863932(-) (11)//scaffold_34:107958-108322(-) (11)	NA	Q9HC21	Mitochondrial thiamine pyrophosphate carrier	AT5G48970.1	Mitochondrial substrate carrier family protein 	LOC_Os01g70800.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g138870.1	Mitochondrial carrier protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75798.1.A1_at	A	A1TS	POPTR_0005s23270	POPTR_0005s23270 (11)	scaffold_5:22101819-22102342(+) (11)	NA	NA	NA	AT5G36740.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	NA
PtpAffx.75801.1.A1_at	A	A1TS	POPTR_0005s23300	POPTR_0005s23300 (10)	scaffold_5:22124965-22125160(+) (10)	NA	NA	NA	AT4G02715.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g084110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75804.1.A1_at	A	A1TS	POPTR_0016s10880	POPTR_0016s10880 (11)	scaffold_16:9244786-9245209(+) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT3G53150.1	UDP-glucosyl transferase 73D1 	LOC_Os01g08110.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr5g048550.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75807.1.A1_at	A	A1TS	POPTR_0015s09130	POPTR_0015s09130 (11)	scaffold_15:10443104-10443248(-) (11)	NA	Q9SB63	Protein MODIFIER OF SNC1 1	AT4G24680.1	modifier of snc1 	LOC_Os12g37860.1	expressed protein	Medtr3g114390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75809.1.A1_at	A	A1TS	POPTR_0006s29340	POPTR_0006s29340 (11)	scaffold_6:26742868-26743389(+) (11)	NA	NA	NA	AT4G31270.1	sequence-specific DNA binding transcription factors 	LOC_Os02g07800.1	"transcription factor, putative, expressed"	Medtr1g010230.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75825.1.A1_a_at	A	A1TS	POPTR_0008s16130	POPTR_0008s16130 (11)	scaffold_8:10780045-10780292(+) (11)	NA	Q9FLG2	Magnesium transporter MRS2-2	AT5G64560.1	magnesium transporter 9 	LOC_Os03g53110.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr1g117730.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75825.2.A1_at	A	A1TS	POPTR_0010s08850	POPTR_0010s08850 (11)	scaffold_10:9645765-9645905(-) (11)	NA	Q304A0	Magnesium transporter MRS2-7	AT5G09690.2	magnesium transporter 7 	LOC_Os03g53110.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr1g117730.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75827.1.A1_at	A	A1MS	POPTR_0006s25110	POPTR_0006s25110 (11)	scaffold_6:23563511-23563600(+) (11)	NA	NA	NA	AT5G11700.1	LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g09246.1	"glycine-rich protein, putative, expressed"	Medtr3g128150.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75827.1.A1_s_at	A	A1TS	POPTR_0006s25110	POPTR_0006s25110 (11)	scaffold_6:23563336-23563524(+) (11)	POPTR_0018s04760 (8)	NA	NA	AT5G11700.1	LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g09246.1	"glycine-rich protein, putative, expressed"	Medtr3g128150.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75830.1.A1_at	A	A1MS	POPTR_0015s11800	POPTR_0015s11800 (11)	scaffold_15:12325823-12326225(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75845.1.A1_s_at	A	A1TS	POPTR_0009s05940	POPTR_0009s05940 (10)	scaffold_9:5898914-5899479(+) (10)	NA	Q54FB7	Xanthine dehydrogenase	AT4G34890.1	xanthine dehydrogenase 1 	LOC_Os03g31550.1	"aldehyde oxidase, putative, expressed"	Medtr2g117560.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0051536|iron-sulfur cluster binding||GO:0046872|metal ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.75850.1.S1_at	A	A1TS	POPTR_0006s06230	POPTR_0006s06230 (11)	scaffold_6:4436332-4436667(+) (11)	NA	Q6S5G3	"Translocase of chloroplast 90, chloroplastic"	AT5G20300.2	Avirulence induced gene (AIG1) family protein 	LOC_Os12g09570.2	"GTP binding protein, putative, expressed"	Medtr8g121750.1	"GTP-binding protein, HSR1-related; Chloroplast protein import component Toc86/159 "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.75853.1.A1_s_at	A	A1TS	POPTR_0019s12150	POPTR_0019s12150 (11)	scaffold_19:13279225-13279434(+) (11)	NA	NA	NA	AT3G58110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1); Has 2534 Blast hits to 1905 proteins in 233 species: Archae - 11; Bacteria - 102; Metazoa - 890; Fungi - 241; Plants - 124; Viruses - 59; Other Eukaryotes - 1107 (source: NCBI BLink). 	LOC_Os06g34710.1	expressed protein	AC233675_21.1	hypothetical protein AC233675.1 101243-98727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75855.1.A1_at	A	A1TS	POPTR_0011s15440	POPTR_0011s15440 (11)	scaffold_11:17520387-17520887(-) (11)	NA	O65351	Subtilisin-like protease	AT1G32960.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr4g132770.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.75857.1.A1_at	A	A1TS	POPTR_0017s11430	POPTR_0017s11430 (9)	scaffold_17:11186175-11186210(-) (9)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT3G01280.1	voltage dependent anion channel 1 	LOC_Os09g19734.3	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr7g008680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.75863.1.A1_at	A	A1TS	POPTR_0014s03110	POPTR_0014s03110 (11)	scaffold_14:2522574-2522949(-) (11)	NA	Q9FX08	Probable protein phosphatase 2C 12	AT1G47380.1	Protein phosphatase 2C family protein 	LOC_Os02g35910.1	"protein phosphotase protein, putative, expressed"	Medtr3g147960.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75865.1.A1_at	A	A1TS	POPTR_0005s18790	POPTR_0005s18790 (11)	scaffold_5:17082152-17082558(+) (11)	NA	Q8BHJ5	F-box-like/WD repeat-containing protein TBL1XR1	AT5G67320.1	WD-40 repeat family protein 	LOC_Os07g22220.1	"F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed"	Medtr5g016350.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75868.1.A1_at	A	A1TS	POPTR_0005s24410	POPTR_0005s24410 (11)	scaffold_5:22959990-22960103(-) (11)	NA	NA	NA	AT2G31270.1	homolog of yeast CDT1 A 	LOC_Os04g10650.1	"CDT1A - Putative DNA replication initiation protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7587.1.A1_at	A	A1TS	POPTR_0019s13570	POPTR_0019s13570 (11)	scaffold_19:14470246-14470717(-) (11)	NA	P53603	Formimidoyltransferase-cyclodeaminase	AT2G20830.1	transferases;folic acid binding 	LOC_Os03g38540.1	"folic acid binding protein, putative, expressed"	Medtr8g102530.1	Formiminotransferase 	GO:0008152|metabolic process	GO:0005542|folic acid binding||GO:0016740|transferase activity	NA
PtpAffx.7589.1.S1_s_at	A	A1TS	POPTR_0008s11330	POPTR_0008s11330 (11)	scaffold_8:7166370-7166843(-) (11)	NA	Q8GVE8	Phosphoenolpyruvate carboxylase 4	AT1G68750.1	phosphoenolpyruvate carboxylase 4 	LOC_Os01g02050.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr1g118320.1	Phosphoenolpyruvate carboxylase; AAA ATPase; 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.759.1.S1_s_at	A	A1TS	POPTR_0014s12380	POPTR_0014s12380 (11)	scaffold_14:9135135-9135469(-) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.75907.1.A1_at	A	A1TS	POPTR_0001s15900	POPTR_0001s15900 (11)	scaffold_1:12734022-12734447(-) (11)	NA	Q9S7J8	Copper-transporting ATPase RAN1	AT5G44790.1	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) 	LOC_Os02g07630.1	"copper-transporting ATPase, putative, expressed"	Medtr4g089740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.75910.1.A1_at	A	A1TA	POPTR_0006s13740	POPTR_0006s13740 (11)	scaffold_6:10961833-10962089(-) (11)	NA	Q3E989	Probable pectinesterase/pectinesterase inhibitor 54	AT5G20860.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr7g046950.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.75922.1.A1_at	A	A1TS	POPTR_0008s09220	POPTR_0008s09220 (11)	scaffold_8:5698731-5699226(-) (11)	NA	NA	NA	AT2G03360.2	Glycosyltransferase family 61 protein 	LOC_Os01g31370.1	"glycosyltransferase, putative, expressed"	Medtr5g046140.1	Protein of unknown function DUF563 	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.75936.1.A1_at	A	A1TS	POPTR_0002s00860	POPTR_0002s00860 (11)	scaffold_2:400818-401044(+) (11)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT5G24318.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os01g53750.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g160090.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.75951.1.A1_at	A	A1TS	POPTR_0008s13140	POPTR_0008s13140 (11)	scaffold_8:8580080-8580238(+) (11)	NA	Q8LBH2	Putative clathrin assembly protein At2g01600	AT2G01600.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr8g129660.1	"Carbamoyl-phosphate synthase L chain, ATP-binding; ENTH/VHS; ANTH; "	NA	GO:0005543|phospholipid binding	NA
PtpAffx.75982.1.S1_at	A	A1TS	POPTR_0006s11130	POPTR_0006s11130 (9)	scaffold_6:8442899-8443274(-) (9)	POPTR_0016s14630 (8)	NA	NA	AT3G08670.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51540.1); Has 48380 Blast hits to 29827 proteins in 1356 species: Archae - 46; Bacteria - 5589; Metazoa - 17361; Fungi - 13192; Plants - 2237; Viruses - 905; Other Eukaryotes - 9050 (source: NCBI BLink). 	LOC_Os01g60309.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g093370.1	"En/Spm-like transposon protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75991.1.A1_at	A	A1TS	POPTR_0003s11220	POPTR_0003s11220 (11)	scaffold_3:12071323-12071364(+) (11)	NA	Q9SU40	Monocopper oxidase-like protein SKU5	AT4G12420.2	Cupredoxin superfamily protein 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.76003.1.A1_at	A	A1TS	POPTR_0001s25730	POPTR_0001s25730 (11)	scaffold_1:24787172-24787996(+) (11)	NA	O89033	Cell division control protein 6 homolog	AT1G07270.1	"Cell division control, Cdc6 "	LOC_Os01g63710.1	"CDC6 - Putative DNA replication initiation protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76011.1.A1_at	A	A1TS	POPTR_0001s00910	POPTR_0001s00910 (11)	scaffold_1:746936-747209(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7603.1.A1_s_at	A	A1TS	POPTR_0003s06580	POPTR_0003s06580 (11)	scaffold_3:8079780-8080283(-) (11)	NA	NA	NA	AT1G72510.2	Protein of unknown function (DUF1677) 	LOC_Os05g44410.1	conserved hypothetical protein	Medtr8g025320.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7603.2.S1_at	A	A1TS	POPTR_0001s16710	POPTR_0001s16710 (9)	scaffold_1:13499350-13499486(+) (9)	NA	NA	NA	AT1G72510.2	Protein of unknown function (DUF1677) 	LOC_Os06g09900.1	expressed protein	Medtr8g025320.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7604.1.A1_at	A	A1TS	POPTR_0167s00230	POPTR_0167s00230 (11)	scaffold_167:42868-43140(+) (11)//scaffold_19:15640435-15640707(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7604.2.A1_at	A	A1TS	POPTR_0019s15010	POPTR_0019s15010 (11)	scaffold_167:39034-39161(+) (11)//scaffold_19:15644268-15644395(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7604.6.A1_at	A	A2TS	POPTR_0019s14980	POPTR_0019s14980 (11)//POPTR_0167s00210 (9)	scaffold_167:8763-8795(+) (9)//scaffold_19:15606007-15606061(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7604.7.A1_a_at	A	A1TS	POPTR_0167s00200	POPTR_0167s00200 (9)	scaffold_167:3847-3903(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76046.1.A1_s_at	A	A1TS	POPTR_0001s41300	POPTR_0001s41300 (11)	scaffold_1:40921676-40922172(+) (11)	NA	Q09151	Glutelin type-A 3	AT1G07750.1	RmlC-like cupins superfamily protein 	LOC_Os01g74480.1	"cupin domain containing protein, expressed"	Medtr4g137470.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.76054.1.A1_at	A	A1TS	POPTR_0003s18420	POPTR_0003s18420 (11)	scaffold_3:17474614-17474728(+) (11)//scaffold_3:17508027-17508141(+) (11)	NA	NA	NA	AT1G16080.1	"unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os08g16570.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76061.1.A1_at	A	A1TS	POPTR_0010s14360	POPTR_0010s14360 (11)	scaffold_10:13994945-13995442(-) (11)	NA	NA	NA	AT3G25590.1	unknown protein; Has 149 Blast hits to 140 proteins in 44 species: Archae - 0; Bacteria - 6; Metazoa - 40; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76062.1.A1_at	A	A1TS	POPTR_0010s16180	POPTR_0010s16180 (11)	scaffold_10:15183073-15183227(+) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G48100.1	Pectin lyase-like superfamily protein 	LOC_Os05g20020.1	"polygalacturonase, putative, expressed"	Medtr2g037040.1	"Aminoacyl-tRNA synthetase, class I "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.76062.1.A1_s_at	A	A1TS	POPTR_0010s16180	POPTR_0010s16180 (11)	scaffold_10:15182747-15183260(+) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G48100.1	Pectin lyase-like superfamily protein 	LOC_Os05g20020.1	"polygalacturonase, putative, expressed"	Medtr2g037040.1	"Aminoacyl-tRNA synthetase, class I "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.76069.1.A1_at	A	A1MS	POPTR_0011s02890	POPTR_0011s02890 (11)	scaffold_11:2837205-2837460(-) (11)	NA	Q54GB2	CTD small phosphatase-like protein 2	AT5G46410.2	SCP1-like small phosphatase 4 	LOC_Os01g43870.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g056340.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76080.1.A1_at	A	A1MS	POPTR_0012s09130	POPTR_0012s09130 (10)	scaffold_12:10191722-10191811(-) (10)	NA	Q84W65	"SufE-like protein, chloroplastic"	AT5G50210.1	quinolinate synthase 	LOC_Os12g19304.2	"Fe-S metabolism associated domain containing protein, expressed"	Medtr3g102410.1	Fe-S metabolism associated SufE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7610.1.A1_at	A	A1TS	POPTR_0002s14110	POPTR_0002s14110 (10)	scaffold_2:10463133-10463340(-) (10)	NA	Q76E23	Eukaryotic translation initiation factor 4G	AT3G60240.3	eukaryotic translation initiation factor 4G 	LOC_Os07g36940.2	"eukaryotic translation initiation factor 4G, putative, expressed"	Medtr8g008440.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.7610.2.A1_s_at	A	A1TS	POPTR_0002s14110	POPTR_0002s14110 (11)	scaffold_2:10457136-10457218(-) (11)	NA	Q76E23	Eukaryotic translation initiation factor 4G	AT3G60240.3	eukaryotic translation initiation factor 4G 	LOC_Os07g36940.2	"eukaryotic translation initiation factor 4G, putative, expressed"	Medtr8g008440.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.76101.1.A1_a_at	A	A1TS	POPTR_0007s04620	POPTR_0007s04620 (9)	scaffold_7:2868720-2868752(+) (9)	NA	O65154	RNA polymerase II transcriptional coactivator KIWI	AT5G09250.1	ssDNA-binding transcriptional regulator 	LOC_Os02g34830.1	"tetratricopeptide repeat domain containing protein, expressed"	AC235665_4.1	ssDNA-binding transcriptional regulator AC235665.2 17083-14849 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003713|transcription coactivator activity	NA
PtpAffx.76101.1.A1_at	A	A1MS	POPTR_0007s04620	POPTR_0007s04620 (9)	scaffold_7:2868059-2868850(+) (9)	NA	O65154	RNA polymerase II transcriptional coactivator KIWI	AT5G09250.1	ssDNA-binding transcriptional regulator 	LOC_Os02g34830.1	"tetratricopeptide repeat domain containing protein, expressed"	AC235665_4.1	ssDNA-binding transcriptional regulator AC235665.2 17083-14849 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003713|transcription coactivator activity	NA
PtpAffx.76101.2.A1_s_at	A	A1TS	POPTR_0007s04620	POPTR_0007s04620 (11)	scaffold_7:2866315-2866351(+) (11)	NA	O65154	RNA polymerase II transcriptional coactivator KIWI	AT5G09250.1	ssDNA-binding transcriptional regulator 	LOC_Os02g34830.1	"tetratricopeptide repeat domain containing protein, expressed"	AC235665_4.1	ssDNA-binding transcriptional regulator AC235665.2 17083-14849 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003713|transcription coactivator activity	NA
PtpAffx.76102.1.A1_at	A	A1MS	POPTR_0015s04300	POPTR_0015s04300 (9)	scaffold_15:4363545-4364295(-) (10)	NA	Q9S9K9	Transcription factor MYB3	AT1G22640.1	myb domain protein 3 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7611.1.A1_a_at	A	A1MS	POPTR_0016s07700	POPTR_0016s07700 (11)	scaffold_16:5554874-5555333(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76110.1.A1_at	A	A1TS	POPTR_0014s08830	POPTR_0014s08830 (9)	scaffold_14:6535131-6535403(-) (9)	NA	Q5RFQ0	rRNA-processing protein FCF1 homolog	AT2G46230.1	PIN domain-like family protein 	LOC_Os06g06410.2	"rRNA-processing protein FCF, putative, expressed"	Medtr7g143410.1	"Nucleotide binding protein, PINc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76140.1.A1_at	A	A1MS	POPTR_0009s08130	POPTR_0009s08130 (11)	scaffold_9:7487644-7488094(+) (11)	NA	Q55DY8	Mitoferrin	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76148.1.A1_at	A	A1TS	POPTR_0014s14700	POPTR_0014s14700 (10)	scaffold_14:10771839-10772387(-) (10)	NA	O23278	"Pentatricopeptide repeat-containing protein At4g14190, chloroplastic"	AT4G14190.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g07550.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g039890.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76156.1.A1_at	A	A1TS	POPTR_0006s11760	POPTR_0006s11760 (11)	scaffold_6:8951532-8952987(+) (11)	NA	NA	NA	AT3G11290.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os12g10550.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g093090.1	"PIF-like orf1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76162.1.A1_at	A	A1TS	POPTR_0008s19980	POPTR_0008s19980 (11)	scaffold_8:13806372-13806635(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g35060.3	expressed protein	Medtr4g142730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7617.1.S1_a_at	A	A1TS	POPTR_0001s45780	POPTR_0001s45780 (11)	scaffold_1:46304877-46305387(+) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.76171.1.A1_at	A	A1TS	POPTR_0001s25870	POPTR_0001s25870 (11)	scaffold_1:24944603-24946323(+) (11)	NA	NA	NA	AT2G29950.1	ELF4-like 1 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr3g093640.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76181.1.A1_at	A	A1TS	POPTR_0001s05880	POPTR_0001s05880 (11)	scaffold_1:4620571-4621119(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76187.1.A1_at	A	A1TS	POPTR_0010s05370	POPTR_0010s05370 (11)	scaffold_10:6812359-6818419(-) (11)//scaffold_10:6818321-6818918(-) (9)	POPTR_0010s05360 (8)	Q9CAL3	Cysteine-rich receptor-like protein kinase 2	AT1G70520.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 2 	LOC_Os01g36790.1	"TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g035020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.76197.1.A1_at	A	A1MA	POPTR_0001s01120	POPTR_0001s01120 (11)	scaffold_1:872292-872828(+) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT1G31420.2	Leucine-rich repeat protein kinase family protein 	LOC_Os03g16010.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g026640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.76213.1.A1_at	A	A1TS	POPTR_0002s08950	POPTR_0002s08950 (11)	scaffold_2:6329918-6330396(-) (11)	NA	Q39008	Mitogen-activated protein kinase kinase kinase 1	AT4G08500.1	MAPK/ERK kinase kinase 1 	LOC_Os03g49640.2	"STE_MEKK_ste11_MAP3K.14 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g098410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.76221.1.A1_s_at	A	A1TS	POPTR_0006s10250	POPTR_0006s10250 (11)	scaffold_6:7663623-7664061(-) (11)	NA	P48620	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.76226.1.A1_at	A	A1MS	POPTR_0010s15590	POPTR_0010s15590 (11)	scaffold_10:14751625-14752063(+) (11)	NA	Q54YA0	Probable ATP-citrate synthase	AT5G49460.1	ATP citrate lyase subunit B 2 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.7623.1.A1_at	A	A1TS	POPTR_0001s09660	POPTR_0001s09660 (9)	scaffold_1:7361540-7361677(-) (9)	NA	O81742	Beta-adaptin-like protein C	AT4G23460.1	Adaptin family protein 	LOC_Os03g23950.1	"adapitin protein, putative, expressed"	Medtr4g103980.1	"Adaptin, N-terminal; Alpha/gamma adaptin, C-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.7624.1.S1_at	A	A1TS	POPTR_0003s04000	POPTR_0003s04000 (11)	scaffold_3:4614396-4614577(-) (11)	NA	O96552	Charged multivesicular body protein 1	AT1G17730.1	vacuolar protein sorting 46.1 	LOC_Os06g43590.3	"SNF7 domain containing protein, putative, expressed"	Medtr2g121700.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.7624.2.S1_a_at	A	A1TS	POPTR_0003s04000	POPTR_0003s04000 (11)	scaffold_3:4614708-4615062(-) (11)	NA	O96552	Charged multivesicular body protein 1	AT1G17730.1	vacuolar protein sorting 46.1 	LOC_Os06g43590.3	"SNF7 domain containing protein, putative, expressed"	Medtr2g121700.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.7624.3.S1_at	A	A1TA	POPTR_0003s19140	POPTR_0003s19140 (10)	scaffold_3:17936623-17936811(+) (10)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.7625.1.S1_s_at	A	A1TS	POPTR_0011s09860	POPTR_0011s09860 (11)	scaffold_11:12309774-12311062(+) (11)	NA	Q9ZP06	"Malate dehydrogenase 1, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.7625.3.S1_s_at	A	A1TS	POPTR_0001s38560	POPTR_0001s38560 (11)	scaffold_1:37766381-37767325(-) (11)	NA	Q9ZP06	"Malate dehydrogenase 1, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.7625.4.S1_a_at	A	A1TS	POPTR_0011s09860	POPTR_0011s09860 (11)	scaffold_11:12307678-12307853(+) (11)	NA	Q9ZP06	"Malate dehydrogenase 1, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.7625.5.A1_at	A	A1TS	POPTR_0011s09860	POPTR_0011s09860 (11)	scaffold_11:12310886-12311004(+) (11)	NA	Q9ZP06	"Malate dehydrogenase 1, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.76285.1.A1_at	A	A1TS	POPTR_0011s16640	POPTR_0011s16640 (10)	scaffold_11:18442936-18443281(-) (10)	NA	NA	NA	AT4G20900.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g43040.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g129970.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76291.1.A1_at	A	A1TS	POPTR_0002s06010	POPTR_0002s06010 (11)	scaffold_2:4003885-4006067(-) (11)	NA	Q9SVV6	Probable calcium-activated outward-rectifying potassium channel 6	AT4G18160.1	Ca2+ activated outward rectifying K+ channel 6 	LOC_Os09g12790.1	"potassium channel protein, putative, expressed"	Medtr7g134030.1	Ion transport 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76291.2.A1_a_at	A	A1TS	POPTR_0002s06010	POPTR_0002s06010 (11)	scaffold_2:4006113-4006757(-) (11)	NA	Q9SVV6	Probable calcium-activated outward-rectifying potassium channel 6	AT4G18160.1	Ca2+ activated outward rectifying K+ channel 6 	LOC_Os09g12790.1	"potassium channel protein, putative, expressed"	Medtr7g134030.1	Ion transport 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76309.1.A1_at	A	A1TS	POPTR_0011s12610	POPTR_0011s12610 (11)	scaffold_11:15312108-15313208(+) (11)	NA	P94479	Uncharacterized protein ynbB	NA	NA	LOC_Os04g54380.1	"aluminum resistance protein, putative"	Medtr4g142320.1	Aluminium resistance; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7631.1.S1_at	A	A1TS	POPTR_0019s05860	POPTR_0019s05860 (11)	scaffold_19:6274542-6274645(-) (11)	NA	NA	NA	AT5G16680.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os12g24540.1	"PHD-finger family protein, expressed"	Medtr5g007340.1	"Zinc finger, FYVE/PHD-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76327.2.A1_a_at	A	A1TS	POPTR_0010s08650	POPTR_0010s08650 (11)	scaffold_10:9538300-9539582(-) (11)	NA	Q682V0	DNA repair protein XRCC4	AT3G23100.2	homolog of human DNA ligase iv-binding protein XRCC4 	LOC_Os03g53000.1	"XRCC4, putative, expressed"	Medtr1g089910.1	"XRCC4 homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76338.1.A1_at	A	A1TS	POPTR_0012s08050	POPTR_0012s08050 (9)	scaffold_12:9059985-9060620(-) (9)	NA	NA	NA	AT4G20970.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01870.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g017430.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.76343.1.A1_at	A	A1TS	POPTR_0006s23110	POPTR_0006s23110 (11)	scaffold_6:21963635-21963924(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76347.1.A1_at	A	A1TS	POPTR_0001s25780	POPTR_0001s25780 (11)	scaffold_1:24809230-24809388(-) (11)	NA	Q84T03	DEAD-box ATP-dependent RNA helicase 27	AT3G18600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g58810.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g115790.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.76357.1.A1_s_at	A	A1TS	POPTR_0012s09070	POPTR_0012s09070 (11)	scaffold_12:10131341-10131696(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT4G20140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os05g07820.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative"	Medtr1g093120.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.76374.1.S1_at	A	A1TS	POPTR_0016s11790	POPTR_0016s11790 (11)	scaffold_16:10959787-10960636(+) (11)	NA	Q9LD43	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic"	AT2G38040.2	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76375.1.A1_s_at	A	A1TS	POPTR_0006s20590	POPTR_0006s20590 (11)	scaffold_6:19614181-19614364(-) (11)	NA	NA	NA	AT1G20970.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os08g40250.1	expressed protein	Medtr1g039770.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7639.1.A1_at	A	A4TS	POPTR_0004s14410	POPTR_0129s00200 (10)//POPTR_0004s14410 (10)//POPTR_0004s14430 (10)//POPTR_0004s14400 (9)	scaffold_129:5000-5364(+) (10)//scaffold_4:14877670-14878037(-) (9)//scaffold_4:14900437-14908492(-) (10)//scaffold_4:14939817-14940181(-) (10)	NA	Q08298	Dehydration-responsive protein RD22	AT5G25610.1	BURP domain-containing protein 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr3g132690.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76393.1.A1_at	A	A1TS	POPTR_0003s17830	POPTR_0003s17830 (11)	scaffold_3:17096148-17096530(-) (11)	NA	Q94AW5	Ethylene-responsive transcription factor ERF003	AT5G25190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g55380.1	"AP2 domain containing protein, expressed"	Medtr3g137990.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.76395.1.A1_a_at	A	A1TS	POPTR_0004s21830	POPTR_0004s21830 (11)	scaffold_4:20825669-20825864(+) (11)	NA	O64966	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g024810.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
PtpAffx.76408.1.A1_a_at	A	A2TS	POPTR_0006s18400	POPTR_0006s18400 (11)//POPTR_0018s10110 (11)	scaffold_18:11097472-11098898(-) (11)//scaffold_6:16809100-16810509(-) (11)	NA	NA	NA	AT4G30240.1	Syntaxin/t-SNARE family protein 	LOC_Os08g14640.1	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr8g128850.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.76408.1.A1_at	A	A1TS	POPTR_0018s10110	POPTR_0018s10110 (9)	scaffold_18:11095574-11097453(-) (9)	NA	NA	NA	AT4G30240.1	Syntaxin/t-SNARE family protein 	LOC_Os08g14640.1	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr8g128850.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.76408.3.A1_a_at	A	A1TS	POPTR_0006s18400	POPTR_0006s18400 (9)	scaffold_6:16807619-16809087(-) (11)	NA	NA	NA	AT4G30240.1	Syntaxin/t-SNARE family protein 	LOC_Os08g14640.1	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr8g128850.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.76417.1.A1_s_at	A	A1TS	POPTR_0001s09520	POPTR_0001s09520 (11)	scaffold_1:7258367-7258672(-) (11)	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G63700.1	Protein kinase superfamily protein 	LOC_Os04g47240.3	"STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g126720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.76420.1.A1_at	A	A1TS	POPTR_0003s06800	POPTR_0003s06800 (11)	scaffold_3:8318673-8319982(-) (11)	NA	NA	NA	AT1G72410.1	COP1-interacting protein-related 	LOC_Os07g42410.1	expressed protein	Medtr8g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76427.1.A1_at	A	A1TA	POPTR_0010s16530	POPTR_0010s16530 (9)	scaffold_10:15451680-15452032(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76428.1.S1_at	A	A1TS	POPTR_0006s14490	POPTR_0006s14490 (10)	scaffold_6:11835330-11835751(+) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G35570.1	O-fucosyltransferase family protein 	LOC_Os09g27080.1	"growth regulator related protein, putative, expressed"	Medtr5g088940.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76435.1.A1_at	A	A1TA	POPTR_0015s14580	POPTR_0015s14580 (9)	scaffold_15:14109727-14110183(+) (9)	NA	Q5RF14	Mitochondrial intermediate peptidase	AT5G51540.1	Zincin-like metalloproteases family protein 	LOC_Os06g47210.1	"oligopeptidase, putative, expressed"	Medtr3g010510.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.76441.2.A1_a_at	A	A1TS	POPTR_0003s01730	POPTR_0003s01730 (10)	scaffold_3:1605505-1605717(+) (10)	NA	A5JTQ3	Beta-xylosidase/alpha-L-arabinofuranosidase 2	AT5G64570.1	beta-D-xylosidase 4 	LOC_Os04g54810.1	"beta-D-xylosidase, putative, expressed"	Medtr2g008400.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.76446.1.A1_at	A	A1TS	POPTR_0001s34080	POPTR_0001s34080 (11)	scaffold_1:32214479-32214966(-) (11)	NA	NA	NA	AT3G01810.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). 	LOC_Os12g13340.1	expressed protein	Medtr6g025280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76448.1.A1_at	A	A1TS	POPTR_0013s15330	POPTR_0013s15330 (11)	scaffold_13:15351849-15352117(-) (11)	NA	Q6Z3U3	B3 domain-containing protein Os07g0679700	AT2G30470.1	high-level expression of sugar-inducible gene 2 	LOC_Os07g48200.1	"B3 DNA binding domain containing protein, putative, expressed"	Medtr4g036540.1	"Transcriptional factor B3; Zinc finger, CW-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.76458.1.A1_at	A	A1TS	POPTR_0010s11340	POPTR_0010s11340 (11)	scaffold_10:11632072-11632477(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76459.1.A1_at	A	A1TS	POPTR_0369s00220	POPTR_0369s00220 (11)	scaffold_369:14713-15259(+) (11)//scaffold_5:2872546-2873092(+) (11)	NA	Q3EBC2	Probable S-acyltransferase At3g04970	AT3G04970.2	DHHC-type zinc finger family protein 	LOC_Os03g24900.1	"DHHC zinc finger domain containing protein, expressed"	Medtr7g139870.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.76466.1.A1_at	A	A1TS	POPTR_0005s24000	POPTR_0005s24000 (9)	scaffold_5:22679687-22679898(+) (9)	NA	Q941F1	"Phospholipase A1-Igamma1, chloroplastic"	AT1G06800.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g32380.1	"phospholipase, putative, expressed"	Medtr4g104700.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.76470.1.A1_at	A	A1TS	POPTR_0005s25010	POPTR_0005s25010 (9)	scaffold_5:23376635-23376902(-) (9)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT1G47270.2	tubby like protein 6 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76483.1.A1_s_at	A	A1TS	POPTR_0011s05260	POPTR_0011s05260 (11)	scaffold_11:5147746-5149343(+) (11)	NA	Q9M0Y8	Vesicle-fusing ATPase	AT4G04910.1	AAA-type ATPase family protein 	LOC_Os05g44310.1	"vesicle-fusing ATPase, putative, expressed"	AC233659_3.1	AAA ATPase AC233659.1 11110-14927 E EGN_Mt090430 200	NA	GO:0005524|ATP binding	NA
PtpAffx.76492.1.A1_s_at	A	A1TS	POPTR_0007s02450	POPTR_0007s02450 (11)	scaffold_7:1455544-1455846(+) (11)	NA	Q9FND9	Probable galactinol--sucrose galactosyltransferase 5	AT5G40390.1	Raffinose synthase family protein 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr3g114540.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.765.1.A1_at	A	A1TS	POPTR_0013s04350	POPTR_0013s04350 (10)	scaffold_13:2960039-2961920(+) (10)	NA	O07051	L-allo-threonine aldolase	AT1G08630.4	threonine aldolase 1 	LOC_Os04g43650.2	"L-allo-threonine aldolase, putative, expressed"	Medtr1g093690.1	"Aromatic amino acid beta-eliminating lyase/threonine aldolase; Polynucleotidyl transferase, Ribonuclease H fold; ; "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity	NA
PtpAffx.76503.1.A1_at	A	A1TS	POPTR_0001s36250	POPTR_0001s36250 (10)	scaffold_1:34788747-34789054(+) (10)	NA	NA	NA	AT3G01720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). 	LOC_Os01g67750.1	expressed protein	AC145328_11.1	hypothetical protein AC145328.23 57989-50900 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76506.1.A1_at	A	A1TS	POPTR_0008s12230	POPTR_0008s12230 (11)	scaffold_8:7899723-7899952(-) (11)	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.76536.1.A1_at	A	A1TS	POPTR_0010s04770	POPTR_0010s04770 (11)	scaffold_10:5924522-5924897(+) (11)	NA	P92998	Germin-like protein subfamily 1 member 1	AT1G10460.1	germin-like protein 7 	LOC_Os03g08150.1	"Cupin domain containing protein, expressed"	Medtr5g037680.1	Cupin region 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.76537.1.A1_at	A	A1TS	POPTR_0016s05280	POPTR_0016s05280 (9)	scaffold_16:3208420-3208598(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76539.1.A1_at	A	A1TS	POPTR_0003s09930	POPTR_0003s09930 (11)	scaffold_3:11092152-11092460(+) (11)	NA	Q94F87	DNA (cytosine-5)-methyltransferase CMT2	AT4G19020.1	chromomethylase 2 	LOC_Os05g13780.1	"C-5 cytosine-specific DNA methylase, putative, expressed"	Medtr5g023510.1	Chromo; Bromo adjacent region; C-5 cytosine-specific DNA methylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76540.1.A1_at	A	A1TS	POPTR_0003s19480	POPTR_0003s19480 (11)	scaffold_3:18196837-18197068(-) (11)	NA	O22193	U-box domain-containing protein 4	AT1G08315.1	ARM repeat superfamily protein 	LOC_Os01g72600.1	"spotted leaf 11, putative, expressed"	Medtr8g043200.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76546.1.A1_at	A	A1TS	POPTR_0003s13580	POPTR_0003s13580 (11)	scaffold_3:13932401-13933409(+) (11)	NA	Q94F27	"Probable beta-1,3-galactosyltransferase 11"	AT5G53340.1	Galactosyltransferase family protein 	LOC_Os08g29710.1	"galactosyltransferase family protein, putative, expressed"	Medtr5g009800.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.766.1.S1_at	A	A1TS	POPTR_0009s09200	POPTR_0009s09200 (11)	scaffold_9:8215134-8215364(+) (11)	NA	O80977	Vacuolar-sorting receptor 3	AT2G14740.2	vaculolar sorting receptor 3 	LOC_Os10g20630.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.766.1.S1_s_at	A	A1TS	POPTR_0009s09200	POPTR_0009s09200 (11)	scaffold_9:8214200-8215389(+) (11)	NA	O80977	Vacuolar-sorting receptor 3	AT2G14740.2	vaculolar sorting receptor 3 	LOC_Os10g20630.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76621.1.S1_s_at	A	A1TS	POPTR_0001s12510	POPTR_0001s12510 (11)	scaffold_1:9707783-9708150(-) (11)	NA	B0CAZ0	Chaperone protein dnaJ	AT5G59610.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g60790.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g117200.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.76658.1.S1_at	A	A1TS	POPTR_0004s08640	POPTR_0004s08640 (10)	scaffold_4:7173051-7173100(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g087150.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76658.1.S1_s_at	A	A1TS	POPTR_0004s08640	POPTR_0004s08640 (11)	scaffold_4:7172845-7173026(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g087150.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7667.1.S1_a_at	A	A1TS	POPTR_0013s15230	POPTR_0013s15230 (11)	scaffold_13:15251578-15251989(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76691.1.S1_at	A	A1TS	POPTR_0015s07580	POPTR_0015s07580 (10)	scaffold_15:8865980-8867979(+) (10)	NA	P0CB49	YLP motif-containing protein 1	AT5G62760.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g12360.1	"nuclear protein ZAP-related, putative, expressed"	Medtr8g112830.1	"nuclear protein ZAP-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.767.1.S1_at	A	A1TS	POPTR_0019s05110	POPTR_0019s05110 (10)	scaffold_19:5351591-5351851(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7671.1.A1_a_at	A	A3TS	POPTR_0001s25390	POPTR_0001s25390 (11)//POPTR_0009s04470 (11)//POPTR_0187s00230 (11)	scaffold_1:24522967-24525097(-) (11)//scaffold_187:41690-43874(+) (11)//scaffold_9:4829042-4831659(-) (11)	NA	NA	NA	AT5G59000.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os05g37900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7671.2.A1_at	A	A1TS	POPTR_0009s04470	POPTR_0009s04470 (10)	scaffold_187:43940-44266(+) (11)//scaffold_9:4828650-4828976(-) (11)	NA	NA	NA	AT5G59000.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os05g37900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76713.1.S1_at	A	A1MS	POPTR_0001s30140	POPTR_0001s30140 (11)	scaffold_1:28696487-28697341(+) (11)	NA	Q9N4Y9	Zinc finger protein-like 1 homolog	AT2G14835.2	RING/U-box superfamily protein 	LOC_Os10g20600.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g135130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76713.1.S1_s_at	A	A1TS	POPTR_0001s30140	POPTR_0001s30140 (11)	scaffold_1:28696629-28697167(+) (11)	NA	Q9N4Y9	Zinc finger protein-like 1 homolog	AT2G14835.2	RING/U-box superfamily protein 	LOC_Os10g20600.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g135130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76720.1.S1_at	A	A1TS	POPTR_0012s14890	POPTR_0012s14890 (11)	scaffold_12:14601272-14604171(+) (11)	NA	Q5S2C4	Protein NAP1	AT2G35110.1	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76768.1.S1_at	A	A1TS	POPTR_0019s03640	POPTR_0019s03640 (10)	scaffold_19:3720261-3720893(+) (10)	NA	Q06190	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha	AT5G28850.2	Calcium-binding EF-hand family protein 	LOC_Os10g33680.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed"	Medtr1g093540.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76779.1.S1_at	A	A1TS	POPTR_0006s26210	POPTR_0006s26210 (10)	scaffold_6:24480066-24480534(-) (10)	NA	NA	NA	AT2G25680.1	molybdate transporter 1 	LOC_Os08g01120.1	"sulfate transporter, putative, expressed"	Medtr3g135970.1	Sulphate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7681.1.A1_s_at	A	A2TS	POPTR_0006s12980	POPTR_0006s13000 (10)//POPTR_0006s12980 (10)	scaffold_6:10230101-10230162(-) (10)//scaffold_6:10236083-10236144(-) (10)	NA	Q6K215	Probable aquaporin PIP2-2	AT2G37170.1	plasma membrane intrinsic protein 2 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.7681.2.A1_at	A	A1TS	POPTR_0009s07030	POPTR_0009s07030 (11)	scaffold_9:6672871-6673553(+) (11)	NA	P82277	"30S ribosomal protein 2, chloroplastic"	AT3G52150.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g10760.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g031110.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.7681.3.A1_x_at	A	A2TS	POPTR_0006s12980	POPTR_0006s13000 (10)//POPTR_0006s12980 (10)	scaffold_6:10230044-10230617(-) (10)//scaffold_6:10236026-10236599(-) (10)	NA	Q6K215	Probable aquaporin PIP2-2	AT2G37170.1	plasma membrane intrinsic protein 2 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.7684.1.A1_at	A	A1TS	POPTR_0007s13800	POPTR_0007s13800 (10)	scaffold_7:13834828-13835445(+) (10)	NA	Q9SJU4	"Probable fructose-bisphosphate aldolase 1, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.7686.1.S1_a_at	A	A1TS	POPTR_0010s19930	POPTR_0010s19930 (11)	scaffold_10:17694036-17694200(+) (11)	NA	Q7XSQ9	Probable aquaporin PIP1-2	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr5g089400.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.76870.1.A1_at	A	A1MS	POPTR_0018s02170	POPTR_0018s02170 (11)	scaffold_18:1925980-1926617(-) (11)	NA	Q8IRW8	Histone-lysine N-methyltransferase trr	AT4G27910.1	SET domain protein 16 	LOC_Os09g38440.1	"ATXR, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76893.1.A1_at	A	A1TS	POPTR_0003s16400	POPTR_0003s16400 (10)	scaffold_3:15978508-15978823(+) (10)	POPTR_0003s16390 (6)	Q9LYV6	GEM-like protein 5	AT5G13200.1	GRAM domain family protein 	LOC_Os12g29400.1	"GRAM domain containing protein, expressed"	Medtr7g096590.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76902.1.S1_at	A	A1TS	POPTR_0018s10610	POPTR_0018s10610 (9)	scaffold_18:11498017-11499570(+) (9)	NA	NA	NA	AT5G57700.3	BNR/Asp-box repeat family protein 	LOC_Os07g33220.1	"BNR/Asp-box repeat family protein, putative, expressed"	Medtr8g127980.1	Sialidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76932.1.S1_at	A	A1TS	POPTR_0010s19050	POPTR_0010s19050 (9)	scaffold_10:17081692-17083632(-) (9)	NA	NA	NA	AT3G56130.1	biotin/lipoyl attachment domain-containing protein 	NA	NA	Medtr3g097100.1	Biotin/lipoyl attachment 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7696.1.S1_at	A	A1TS	POPTR_0010s08890	POPTR_0010s08890 (11)	scaffold_10:9687435-9687916(+) (11)	NA	O24542	Auxin-induced protein 22D	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os12g40900.1	"OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117720.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.7696.2.A1_a_at	A	A1TS	POPTR_0008s16100	POPTR_0008s16100 (11)	scaffold_8:10750013-10750738(-) (11)	NA	P32294	Auxin-induced protein 22B	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os03g43400.1	"OsIAA11 - Auxin-responsive Aux/IAA gene family member, expressed"	AC233668_17.1	AUX/IAA protein AC233668.2 65033-67329 F EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.7696.4.S1_a_at	A	A1TS	POPTR_0008s16100	POPTR_0008s16100 (11)	scaffold_8:10751109-10751380(-) (11)	NA	P32294	Auxin-induced protein 22B	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os03g43400.1	"OsIAA11 - Auxin-responsive Aux/IAA gene family member, expressed"	AC233668_17.1	AUX/IAA protein AC233668.2 65033-67329 F EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.77.1.S1_at	A	A1TS	POPTR_0005s20610	POPTR_0005s20610 (10)	scaffold_5:19646267-19646759(-) (10)	NA	P34568	BTB and MATH domain-containing protein 43	AT4G08455.1	BTB/POZ domain-containing protein 	LOC_Os07g15490.1	"C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed"	Medtr3g097300.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.77.2.A1_at	A	A1TS	POPTR_0005s25605	POPTR_0005s25605 (11)	scaffold_5:23839012-23839454(-) (11)	NA	P53849	Zinc finger protein GIS2	AT1G75560.2	zinc knuckle (CCHC-type) family protein 	LOC_Os10g39820.1	"zinc knuckle domain containing protein, expressed"	Medtr3g162990.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.77074.1.A1_at	A	A1TS	POPTR_0005s15100	POPTR_0005s15100 (11)	scaffold_5:11910920-11912298(-) (11)	NA	Q9C9N3	Zinc finger CCCH domain-containing protein 14	AT1G66810.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os05g50080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	AC235678_14.1	"Zinc finger, CCCH-type AC235678.1 77770-76962 F EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.7708.1.A1_at	A	A1TS	POPTR_0001s00420	POPTR_0001s00420 (10)	scaffold_1:325017-325478(-) (10)	NA	Q01595	Cortical cell-delineating protein	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os10g40520.1	"LTPL145 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr1g014100.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77102.1.S1_at	A	A1TS	POPTR_0006s19240	POPTR_0006s19240 (9)	scaffold_6:18230112-18230571(+) (11)	NA	Q9M0B6	UDP-glucuronate 4-epimerase 1	AT4G30440.1	UDP-D-glucuronate 4-epimerase 1 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr4g025510.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.77105.1.S1_s_at	A	A1TS	POPTR_0014s14930	POPTR_0014s14930 (11)	scaffold_14:11002471-11003113(+) (11)	NA	Q67YI9	Clathrin interactor EPSIN 2	AT2G43160.1	ENTH/VHS family protein 	LOC_Os02g56270.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7711.1.A1_s_at	A	A1TS	POPTR_0011s04490	POPTR_0011s04490 (11)	scaffold_11:4456131-4458622(-) (11)	NA	Q8H5X5	Secretory carrier-associated membrane protein 1	AT1G61250.1	secretory carrier 3 	LOC_Os07g37740.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
PtpAffx.77111.1.S1_at	A	A1TS	POPTR_0005s08040	POPTR_0005s08040 (11)	scaffold_5:5531100-5532350(+) (11)	NA	NA	NA	AT1G78020.1	Protein of unknown function (DUF581) 	LOC_Os09g20240.1	"DUF581 domain containing protein, expressed"	CU651566_1.1	Protein of unknown function DUF581 CU651566.9 6700-5475 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77118.1.S1_at	A	A1TS	POPTR_0016s05130	POPTR_0016s05130 (11)	scaffold_16:3102151-3103676(-) (11)	NA	NA	NA	AT3G57810.3	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr3g103530.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77144.1.S1_at	A	A1TS	POPTR_0006s11490	POPTR_0006s11490 (10)	scaffold_6:8693686-8694457(-) (11)	NA	Q8Y7C5	Bifunctional protein folD	AT2G38660.3	Amino acid dehydrogenase family protein 	LOC_Os09g15810.1	"bifunctional protein folD, putative, expressed"	Medtr1g037310.1	Tetrahydrofolate dehydrogenase/cyclohydrolase 	GO:0044281|small molecule metabolic process||GO:0009396|folic acid and derivative biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.77158.2.S1_a_at	A	A1TS	POPTR_0017s08970	POPTR_0017s08970 (11)	scaffold_17:7593964-7595153(-) (11)	NA	Q00497	"Shikimate kinase, chloroplastic"	AT3G26900.3	shikimate kinase like 1 	LOC_Os01g01302.1	"shikimate kinase, putative, expressed"	NA	NA	NA	GO:0004765|shikimate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.772.1.A1_s_at	A	A1TS	POPTR_0006s14950	POPTR_0006s14950 (11)	scaffold_6:12424041-12424522(-) (11)	NA	Q9LTR9	Glycylpeptide N-tetradecanoyltransferase 1	AT5G57020.1	myristoyl-CoA:protein N-myristoyltransferase 	LOC_Os01g51170.1	"glycylpeptide N-tetradecanoyltransferase 1, putative, expressed"	Medtr2g046620.1	Myristoyl-CoA:protein N-myristoyltransferase 	GO:0006499|N-terminal protein myristoylation	GO:0004379|glycylpeptide N-tetradecanoyltransferase activity	NA
PtpAffx.7721.2.S1_at	A	A1TS	POPTR_0004s07420	POPTR_0004s07420 (11)	scaffold_4:6117138-6121223(-) (11)	NA	Q80SY5	Pre-mRNA-splicing factor 38B	AT5G37370.1	PRP38 family protein 	LOC_Os05g08600.2	"splicing factor, putative, expressed"	Medtr5g085030.1	PRP38 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77210.1.S1_at	A	A1TS	POPTR_0010s25870	POPTR_0010s25870 (11)	scaffold_10:21333940-21334258(-) (11)	NA	Q9C8K7	F-box/kelch-repeat protein At1g51550	AT1G51550.1	Kelch repeat-containing F-box family protein 	LOC_Os08g13360.2	"kelch repeat protein, putative, expressed"	Medtr2g041400.1	"PAS; Speract/scavenger receptor; Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77237.1.S1_at	A	A1TS	POPTR_0017s04750	POPTR_0017s04750 (10)	scaffold_17:3648858-3649995(+) (10)	NA	Q5R8J8	DnaJ homolog subfamily B member 4	AT2G20560.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	Medtr4g108870.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.77251.1.S1_at	A	A1TS	POPTR_0010s23690	POPTR_0010s23690 (11)	scaffold_10:20187477-20188776(-) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G04420.3	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g57690.2	"kelch repeat protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77295.1.S1_at	A	A1TS	POPTR_0010s16110	POPTR_0010s16110 (9)	scaffold_10:15145664-15146646(+) (9)	NA	Q75QI0	Craniofacial development protein 1	AT5G30490.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). 	LOC_Os01g22500.1	"craniofacial development protein 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77318.1.S1_at	A	A3TS	POPTR_0009s14380	POPTR_0009s14380 (11)//POPTR_0009s14420 (11)//POPTR_0790s00210 (11)	scaffold_790:6344-7068(-) (11)//scaffold_9:11275899-11276638(-) (11)//scaffold_9:11302360-11303084(-) (11)	NA	P06215	Endochitinase	AT3G12500.1	basic chitinase 	LOC_Os03g30470.1	"CHIT4 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.77318.1.S1_x_at	A	A3TS	POPTR_0009s14380	POPTR_0009s14380 (11)//POPTR_0009s14420 (11)//POPTR_0790s00210 (11)	scaffold_790:6344-7062(-) (11)//scaffold_9:11275899-11276632(-) (11)//scaffold_9:11302360-11303078(-) (11)	NA	P06215	Endochitinase	AT3G12500.1	basic chitinase 	LOC_Os03g30470.1	"CHIT4 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.77318.3.S1_at	A	A1TS	POPTR_0004s18870	POPTR_0004s18870 (10)	scaffold_4:18603528-18603756(-) (10)	NA	Q41596	Endochitinase 1	AT3G12500.1	basic chitinase 	LOC_Os03g30470.1	"CHIT4 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.77326.1.S1_at	A	A1TS	POPTR_0009s09910	POPTR_0009s09910 (11)	scaffold_9:8671807-8673790(+) (11)	NA	Q9LT71	Reticulon-like protein B11	AT3G19460.1	Reticulon family protein 	LOC_Os06g30750.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.77326.2.S1_at	A	A1TS	POPTR_0001s30770	POPTR_0001s30770 (10)	scaffold_1:29239077-29240695(+) (10)	NA	Q9LT71	Reticulon-like protein B11	AT3G19460.1	Reticulon family protein 	LOC_Os04g57420.1	"reticulon domain containing protein, putative, expressed"	Medtr4g012120.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.77330.1.S1_at	A	A1TS	POPTR_0009s09600	POPTR_0009s09600 (11)	scaffold_9:8462537-8462680(+) (11)	NA	Q04996	Homeobox protein HAT3.1	AT3G19510.1	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g12400.1	"Homeobox domain containing protein, expressed"	Medtr2g042720.1	"Homeobox; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.77330.1.S1_s_at	A	A1TS	POPTR_0009s09600	POPTR_0009s09600 (11)	scaffold_9:8462779-8463092(+) (11)	NA	Q04996	Homeobox protein HAT3.1	AT3G19510.1	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g12400.1	"Homeobox domain containing protein, expressed"	Medtr2g042720.1	"Homeobox; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.77365.1.S1_at	A	A1TS	POPTR_0006s23700	POPTR_0006s23700 (11)	scaffold_6:22427307-22428159(+) (11)	NA	NA	NA	AT5G21920.1	YGGT family protein 	LOC_Os03g08080.1	"YGGT family protein, putative, expressed"	Medtr3g139240.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.77375.1.S1_at	A	A1TS	POPTR_0015s00810	POPTR_0015s00810 (10)	scaffold_15:465627-466124(+) (10)	NA	NA	NA	AT5G03890.1	unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g122950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7740.1.S1_at	A	A1TS	POPTR_0018s10950	POPTR_0018s10950 (10)	scaffold_18:11781688-11782050(-) (10)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G23910.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g42620.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7740.2.A1_a_at	A	A1TS	POPTR_0018s10950	POPTR_0018s10950 (11)	scaffold_18:11782289-11782386(-) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G23910.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g42620.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77490.1.S1_at	A	A1TS	POPTR_0004s16690	POPTR_0004s16690 (11)	scaffold_4:17081606-17082708(+) (11)	NA	Q9SCV9	Beta-galactosidase 3	AT4G36360.2	beta-galactosidase 3 	LOC_Os03g06940.1	"beta-galactosidase, putative, expressed"	Medtr5g021090.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.77528.2.A1_at	A	A1TS	POPTR_0003s19410	POPTR_0003s19410 (11)	scaffold_3:18136623-18136926(-) (11)	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr8g043600.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.7753.1.A1_a_at	A	A1TS	POPTR_0001s18540	POPTR_0001s18540 (11)	scaffold_1:15592473-15593934(+) (11)	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT1G52220.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	LOC_Os01g55570.1	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77535.1.S1_at	A	A1TS	POPTR_0008s06690	POPTR_0008s06690 (9)	scaffold_8:4010414-4010882(+) (9)	NA	Q9ZT48	Arginyl-tRNA--protein transferase 1	AT5G05700.1	arginine-tRNA protein transferase 1 	LOC_Os05g37434.1	"arginyl-tRNA--protein transferase 1, putative, expressed"	Medtr3g093390.1	"Arginyl tRNA synthetase, N-terminal; Arginine-tRNA-protein transferase, N-terminal; Arginine-tRNA-protein transferase, C-terminal "	GO:0016598|protein arginylation	GO:0004057|arginyltransferase activity	NA
PtpAffx.77539.1.S1_at	A	A1TS	POPTR_0002s19670	POPTR_0002s19670 (10)	scaffold_2:15609575-15610800(+) (10)	NA	Q9ZSM8	Histone-lysine N-methyltransferase EZA1	AT4G02020.1	SET domain-containing protein 	LOC_Os03g19480.1	"SET domain containing protein, expressed"	Medtr1g106640.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77544.1.S1_s_at	A	A1TS	POPTR_0008s17080	POPTR_0008s17080 (11)	scaffold_8:11484594-11484788(-) (11)	NA	NA	NA	AT5G13890.3	Family of unknown function (DUF716)  	NA	NA	Medtr1g065150.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77546.1.S1_s_at	A	A1TS	POPTR_0016s14210	POPTR_0016s14210 (11)	scaffold_16:13442145-13442299(-) (11)	NA	Q9SCU5	Probable serine/threonine-protein kinase WNK5	AT3G51630.2	with no lysine (K) kinase 5 	LOC_Os11g02305.1	expressed protein	Medtr5g083060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.77579.1.S1_a_at	A	A1TS	POPTR_0001s16840	POPTR_0001s16840 (11)	scaffold_1:13656381-13656708(-) (11)	NA	Q17QQ4	Transcription initiation factor TFIID subunit 9	AT1G54140.1	TATA binding protein associated factor 21kDa subunit 	LOC_Os03g29470.1	"transcription initiation factor IID, putative, expressed"	Medtr3g019210.1	Transcription factor TAFII-31; Histone-fold 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	NA	NA
PtpAffx.7760.1.S1_at	A	A1TS	POPTR_0009s13750	POPTR_0009s13750 (10)	scaffold_9:10899223-10900777(-) (10)	NA	O22468	WD-40 repeat-containing protein MSI2	AT2G16780.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77611.1.S1_at	A	A1TS	POPTR_0008s04360	POPTR_0008s04360 (9)	scaffold_8:2450437-2450944(-) (9)	NA	Q9ZVX5	Pentatricopeptide repeat-containing protein At2g16880	AT2G16880.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g10420.1	"PPR repeat containing protein, expressed"	Medtr1g121960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7762.1.A1_at	A	A1TS	POPTR_0014s14420	POPTR_0014s14420 (11)	scaffold_14:10575800-10575901(+) (11)	NA	Q9C5Z2	Eukaryotic translation initiation factor 3 subunit H	AT1G10840.1	translation initiation factor 3 subunit H1 	LOC_Os04g30780.1	"eukaryotic translation initiation factor 3 subunit H, putative, expressed"	Medtr7g021910.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7762.2.S1_at	A	A1TS	POPTR_0002s23460	POPTR_0002s23460 (10)	scaffold_2:20979763-20980815(+) (10)	NA	Q9C5Z2	Eukaryotic translation initiation factor 3 subunit H	AT1G10840.1	translation initiation factor 3 subunit H1 	LOC_Os04g30780.1	"eukaryotic translation initiation factor 3 subunit H, putative, expressed"	Medtr7g021910.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77632.1.A1_s_at	A	A1TS	POPTR_0002s10630	POPTR_0002s10630 (11)	scaffold_2:7728938-7729361(+) (11)	NA	Q90640	Chromosome-associated kinesin KIF4	AT5G33300.1	chromosome-associated kinesin-related 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g149480.1	chromosome-associated kinesin-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7766.1.S1_at	A	A1TS	POPTR_0010s13560	POPTR_0010s13560 (11)	scaffold_10:13375150-13375654(-) (11)	NA	Q9S7Y7	Alpha-xylosidase	AT1G68560.1	alpha-xylosidase 1 	LOC_Os01g03950.1	"glycosyl hydrolase, family 31, putative, expressed"	Medtr5g066370.1	"Glycoside hydrolase, family 31 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.77666.1.S1_at	A	A1TS	POPTR_0013s01210	POPTR_0013s01210 (11)	scaffold_13:662699-662861(+) (11)	NA	Q5R8H0	DnaJ homolog subfamily B member 6	AT1G56300.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g18870.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g138160.1	"Glycoside hydrolase, family 11; Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.77672.2.A1_a_at	A	A1TS	POPTR_0008s17540	POPTR_0008s17540 (11)	scaffold_8:11805009-11805674(-) (11)	NA	Q54YW1	ELMO domain-containing protein A	AT1G67400.1	ELMO/CED-12 family protein 	LOC_Os11g29350.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr3g103680.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
PtpAffx.77672.3.A1_a_at	A	A1TS	POPTR_0008s17540	POPTR_0008s17540 (11)	scaffold_8:11804675-11804747(-) (11)	NA	Q54YW1	ELMO domain-containing protein A	AT1G67400.1	ELMO/CED-12 family protein 	LOC_Os11g29350.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr3g103680.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
PtpAffx.77690.1.A1_at	A	A1TS	POPTR_0012s02360	POPTR_0012s02360 (9)	scaffold_12:1958159-1958877(-) (9)	NA	Q8LDQ4	PP2A regulatory subunit TAP46	AT5G53000.1	2A phosphatase associated protein of 46 kD 	LOC_Os12g04290.1	"PP2A regulatory subunit TAP46, putative, expressed"	Medtr3g123750.1	TAP42-like protein 	GO:0009607|response to biotic stimulus||GO:0009966|regulation of signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling||GO:0023051|regulation of signaling process	NA	NA
PtpAffx.77728.1.A1_s_at	A	A1TS	POPTR_0005s12270	POPTR_0005s12270 (11)	scaffold_5:9052316-9052780(-) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT4G36520.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g44310.2	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77729.1.S1_at	A	A1TS	POPTR_0002s14440	POPTR_0002s14440 (10)	scaffold_2:10713734-10714284(+) (10)	NA	Q9M205	Cyclin-U2-2	AT3G60550.1	cyclin p3;2 	LOC_Os04g46660.1	"cyclin, putative, expressed"	Medtr5g041630.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77733.1.A1_at	A	A1TS	POPTR_0162s00230	POPTR_0162s00230 (9)	scaffold_162:15610-16076(+) (10)	POPTR_0008s01670 (6)	Q9FLE8	Uncharacterized protein At5g39865	AT5G01420.1	Glutaredoxin family protein 	LOC_Os03g44650.1	"glutaredoxin, putative, expressed"	Medtr1g112130.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.77753.1.A1_s_at	A	A1TS	POPTR_0009s02350	POPTR_0009s02350 (11)	scaffold_9:3092127-3094270(-) (11)	NA	Q6PGY5	DnaJ homolog subfamily C member 21	AT1G74250.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os12g31840.1	"ZOS12-05 - C2H2 zinc finger protein, expressed"	Medtr7g132840.1	"Heat shock protein DnaJ, N-terminal; Homeodomain-related; "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.77770.1.A1_at	A	A1TS	POPTR_0017s05780	POPTR_0017s05780 (11)	scaffold_17:4519454-4519916(+) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G59470.2	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g15040.2	"FAR1 family protein, expressed"	Medtr2g118350.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77772.1.A1_at	A	A1TS	POPTR_0008s10070	POPTR_0008s10070 (10)	scaffold_8:6276240-6276486(-) (10)	NA	Q8RWB8	E3 ubiquitin-protein ligase UPL6	AT3G17205.3	ubiquitin protein ligase 6 	LOC_Os05g06690.2	"HECT-domain domain containing protein, expressed"	Medtr2g037340.1	IQ calmodulin-binding region; HECT 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.77817.1.A1_at	A	A1TA	POPTR_0006s24460	POPTR_0006s24460 (10)	scaffold_6:23064030-23064475(-) (10)	NA	A4UVI1	Fatty acid desaturase 1	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	Medtr1g020170.1	Fatty acid desaturase/sphingolipid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.77821.1.A1_at	A	A1TS	POPTR_0002s02190	POPTR_0002s02190 (9)	scaffold_2:1209947-1210205(-) (9)	NA	P50699	Thaumatin-like protein	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77824.1.A1_at	A	A1TS	POPTR_0012s07960	POPTR_0012s07960 (10)	scaffold_12:8950739-8951240(+) (10)	NA	Q9FL07	RING-H2 finger protein ATL46	AT5G40250.1	RING/U-box superfamily protein 	LOC_Os02g50930.1	"RING-H2 finger protein, putative, expressed"	Medtr5g035920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77827.1.A1_s_at	A	A1TS	POPTR_0016s06300	POPTR_0016s06300 (11)	scaffold_16:4233789-4234051(+) (11)	NA	P34789	40S ribosomal protein S28-2	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.7783.1.S1_a_at	A	A2TS	POPTR_0017s05680	POPTR_0017s05690 (10)//POPTR_0017s05680 (10)	scaffold_17:4448267-4448344(+) (10)//scaffold_17:4459687-4459764(+) (10)//scaffold_17:4464548-4464638(+) (9)	NA	Q9FG65	Cytochrome P450 81D1	AT5G10610.1	"cytochrome P450, family 81, subfamily K, polypeptide 1 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.7783.1.S1_at	A	A1TS	POPTR_0017s05690	POPTR_0017s05690 (11)	scaffold_17:4459718-4460079(+) (11)	POPTR_0017s05680 (7)	Q9FG65	Cytochrome P450 81D1	AT5G10610.1	"cytochrome P450, family 81, subfamily K, polypeptide 1 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.7783.2.S1_at	A	A1TS	POPTR_0048s00240	POPTR_0048s00240 (11)	scaffold_48:81639-81966(+) (11)	NA	Q9FG65	Cytochrome P450 81D1	AT5G10610.1	"cytochrome P450, family 81, subfamily K, polypeptide 1 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.77846.1.A1_s_at	A	A1TS	POPTR_0019s03520	POPTR_0019s03520 (11)	scaffold_19:3602306-3604557(+) (11)	POPTR_0013s04340 (7)	P92948	Cell division cycle 5-like protein	AT1G09770.1	cell division cycle 5 	LOC_Os04g28090.1	"MYB family transcription factor, putative, expressed"	Medtr5g010630.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7785.3.A1_s_at	A	A1TS	POPTR_0018s03110	POPTR_0018s03110 (10)	scaffold_18:2760389-2760422(-) (10)	NA	Q940T9	Zinc finger protein CONSTANS-LIKE 4	AT5G24930.1	CONSTANS-like 4 	LOC_Os04g42020.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr1g016230.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.77850.1.A1_at	A	A1TS	POPTR_0016s06040	POPTR_0016s06040 (11)	scaffold_16:3975914-3976516(-) (11)	NA	Q6S001	Kinesin-related protein 11	AT3G12020.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53520.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g112390.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.77850.2.S1_at	A	A1TS	POPTR_0016s06040	POPTR_0016s06040 (9)	scaffold_16:3974256-3975681(-) (9)	NA	Q6S001	Kinesin-related protein 11	AT3G12020.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53520.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g112390.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.77851.1.A1_at	A	A1TS	POPTR_0011s05400	POPTR_0011s05400 (9)	scaffold_11:5321356-5321626(+) (9)	NA	NA	NA	AT4G21020.1	Late embryogenesis abundant protein (LEA) family protein 	LOC_Os04g52110.1	"late embryogenesis abundant protein, group 3, putative, expressed"	Medtr2g017540.1	"late embryogenesis abundant protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77864.1.S1_s_at	A	A1TS	POPTR_0009s05900	POPTR_0009s05900 (11)	scaffold_9:5853798-5855538(+) (11)	NA	Q8YZH7	GTPase Der	AT3G12080.1	GTP-binding family protein 	LOC_Os11g41910.1	"GTP-binding protein, putative, expressed"	CU651589_6.1	"GTP-binding protein, HSR1-related CU651589.4 33538-37140 E EGN_Mt090430 200"	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.77880.1.A1_s_at	A	A1TS	POPTR_0010s12450	POPTR_0010s12450 (11)	scaffold_10:12487174-12487311(-) (11)	NA	NA	NA	AT1G23000.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g03490.1	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.77880.2.A1_s_at	A	A1TS	POPTR_0010s12450	POPTR_0010s12450 (11)	scaffold_10:12487690-12487776(-) (11)	NA	NA	NA	AT1G23000.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g03490.1	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.77889.1.S1_at	A	A2TS	POPTR_0002s11930	POPTR_0002s11930 (11)//POPTR_0014s01630 (11)	scaffold_14:1520618-1520955(-) (11)//scaffold_2:8838885-8839222(-) (11)	NA	Q86TV6	Tetratricopeptide repeat protein 7B	AT1G27460.1	no pollen germination related 1 	LOC_Os03g10350.2	"NPGR1, putative, expressed"	Medtr1g023320.1	"Peptidase, cysteine peptidase active site; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7791.1.S1_at	A	A1TS	POPTR_0009s11830	POPTR_0009s11830 (9)	scaffold_9:9745228-9745802(-) (9)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr3g159470.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.77911.1.A1_at	A	A1TS	POPTR_0010s08780	POPTR_0010s08780 (11)	scaffold_10:9621804-9622049(+) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.77922.1.A1_at	A	A1TS	POPTR_0008s00860	POPTR_0008s00860 (11)	scaffold_8:403341-403618(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G51630.1	O-fucosyltransferase family protein 	LOC_Os09g32320.1	"growth regulator related protein, putative, expressed"	Medtr2g043060.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77934.1.S1_at	A	A1TS	POPTR_0005s22490	POPTR_0005s22490 (9)	scaffold_5:21409767-21410097(-) (9)	NA	Q9SJG2	Probable receptor-like protein kinase At2g42960	AT3G59110.1	Protein kinase superfamily protein 	LOC_Os10g35450.1	"serine/threonine-protein kinase, putative, expressed"	Medtr3g061780.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.77936.1.S1_at	A	A1TS	POPTR_0005s22370	POPTR_0005s22370 (10)	scaffold_5:21334256-21334767(+) (10)	NA	P08965	Meiosis protein mei2	AT1G29400.2	MEI2-like protein 5 	LOC_Os02g48790.4	"AML1, putative, expressed"	Medtr2g056620.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.7795.1.A1_at	A	A1TS	POPTR_0019s04130	POPTR_0019s04130 (11)	scaffold_19:4236130-4236812(+) (11)	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g42860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143160.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.77953.1.S1_at	A	A1TS	POPTR_0010s16790	POPTR_0010s16790 (11)	scaffold_10:15648794-15649304(-) (11)	NA	Q9LMG7	Probable inactive purple acid phosphatase 2	AT1G13900.1	Purple acid phosphatases superfamily protein 	LOC_Os07g02090.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr4g115740.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.77954.2.S1_at	A	A1TS	POPTR_0003s06540	POPTR_0003s06540 (11)	scaffold_3:8030344-8030434(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77994.1.S1_at	A	A1TS	POPTR_0012s11610	POPTR_0012s11610 (11)	scaffold_12:11967887-11968186(-) (11)	NA	O80513	Cyclin-U4-1	AT2G44740.1	cyclin p4;1 	LOC_Os10g41430.1	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77994.1.S1_s_at	A	A1TS	POPTR_0012s11610	POPTR_0012s11610 (11)	scaffold_12:11967984-11969415(-) (11)	NA	O80513	Cyclin-U4-1	AT2G44740.1	cyclin p4;1 	LOC_Os10g41430.1	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78018.1.S1_a_at	A	A1TS	POPTR_0017s11200	POPTR_0017s11200 (9)	scaffold_17:10919389-10919421(-) (9)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.78018.1.S1_at	A	A1TS	POPTR_0017s11200	POPTR_0017s11200 (11)	scaffold_17:10919208-10919393(-) (11)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.7803.1.S1_at	A	A1TS	POPTR_0013s03790	POPTR_0013s03790 (11)	scaffold_13:2446420-2446757(-) (11)	NA	A3C4S4	"GDP-mannose 3,5-epimerase 1"	AT5G28840.2	"GDP-D-mannose 3',5'-epimerase "	LOC_Os10g28200.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr7g140940.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.7804.3.A1_a_at	A	A3TS	POPTR_0006s26010	POPTR_0018s00850 (11)//POPTR_0006s26010 (11)//POPTR_0343s00200 (11)	scaffold_18:779766-780028(+) (11)//scaffold_343:8625-8887(+) (11)//scaffold_6:24334928-24335190(+) (11)	NA	Q08298	Dehydration-responsive protein RD22	AT5G25610.1	BURP domain-containing protein 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr1g009580.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7804.4.S1_a_at	A	A1TS	POPTR_0018s00850	POPTR_0018s00850 (9)	scaffold_18:778681-779312(+) (9)	NA	Q08298	Dehydration-responsive protein RD22	AT5G25610.1	BURP domain-containing protein 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr1g009580.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78045.2.S1_at	A	A1MS	POPTR_0011s15170	POPTR_0011s15170 (10)	scaffold_11:17310804-17311139(-) (10)	NA	P30707	60S ribosomal protein L9	AT1G33140.1	Ribosomal protein L6 family 	LOC_Os09g31180.1	"ribosomal protein L6, putative, expressed"	Medtr3g122290.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.78078.1.A1_at	A	A1TS	POPTR_0011s14190	POPTR_0011s14190 (10)	scaffold_11:16691652-16692209(-) (10)	NA	NA	NA	AT5G54930.1	AT hook motif-containing protein 	NA	NA	Medtr3g068310.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.78080.2.A1_s_at	A	A1TS	POPTR_0005s00310	POPTR_0005s00310 (11)	scaffold_5:69497-69671(-) (11)	NA	Q6I544	Germin-like protein 5-1	AT3G62020.1	germin-like protein 10 	LOC_Os05g19670.1	"Cupin domain containing protein, expressed"	Medtr1g103240.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.78114.1.S1_at	A	A1TS	POPTR_0010s06260	POPTR_0010s06260 (10)	scaffold_10:7680286-7680831(-) (10)	NA	NA	NA	AT1G24440.1	RING/U-box superfamily protein 	LOC_Os07g17400.2	"zinc finger, RING-type, putative, expressed"	Medtr3g102930.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7814.1.S1_at	A	A1TS	POPTR_0003s08050	POPTR_0003s08050 (11)	scaffold_3:9504288-9506278(+) (11)	NA	Q9LVU1	Vesicle-associated protein 2-1	AT5G47180.2	Plant VAMP (vesicle-associated membrane protein) family protein 	LOC_Os10g40140.1	"MSP domain containing protein, expressed"	Medtr5g013430.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.7814.2.A1_at	A	A1TS	POPTR_0001s15220	POPTR_0001s15220 (11)	scaffold_1:12058457-12058663(-) (11)	NA	Q9LVU1	Vesicle-associated protein 2-1	AT5G47180.2	Plant VAMP (vesicle-associated membrane protein) family protein 	LOC_Os02g43594.1	"MSP domain containing protein, putative, expressed"	Medtr5g013430.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.7814.3.A1_a_at	A	A1TS	POPTR_0001s15220	POPTR_0001s15220 (11)	scaffold_1:12058869-12061089(-) (11)	NA	Q9LVU1	Vesicle-associated protein 2-1	AT5G47180.2	Plant VAMP (vesicle-associated membrane protein) family protein 	LOC_Os02g43594.1	"MSP domain containing protein, putative, expressed"	Medtr5g013430.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.7817.1.S1_s_at	A	A1TS	POPTR_0001s10220	POPTR_0001s10220 (11)	scaffold_1:7916417-7916917(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT5G41670.2	6-phosphogluconate dehydrogenase family protein 	LOC_Os11g29400.1	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.7819.1.S1_at	A	A1TS	POPTR_0015s09670	POPTR_0015s09670 (9)	scaffold_15:10825410-10831067(+) (10)	POPTR_0015s09660 (7)	Q9FGS5	High-affinity nitrate transporter 3.1	AT5G50200.1	nitrate transmembrane transporters 	LOC_Os02g38230.1	"high affinity nitrate transporter, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78207.1.A1_at	A	A1TS	POPTR_0002s17350	POPTR_0002s17350 (11)	scaffold_2:13130335-13130681(+) (11)	NA	Q9ZPY6	Auxin response factor 11	AT2G46530.3	auxin response factor 11 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr4g019570.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.78230.1.A1_at	A	A1TS	POPTR_0014s10740	POPTR_0014s10740 (9)	scaffold_14:8014521-8014953(-) (9)	NA	Q5NB11	Chitinase 10	AT4G01700.1	Chitinase family protein 	LOC_Os01g18400.1	"CHIT10 - Chitinase family protein precursor, expressed"	Medtr7g134170.1	"Glycoside hydrolase, family 19 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
PtpAffx.78244.1.A1_at	A	A1TS	POPTR_0001s23990	POPTR_0001s23990 (11)	scaffold_1:23377604-23378077(+) (11)	NA	Q9XES1	"Calcium-transporting ATPase 4, endoplasmic reticulum-type"	AT1G07670.1	endomembrane-type CA-ATPase 4 	LOC_Os03g17310.1	"calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed"	Medtr7g120500.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.78267.1.S1_s_at	A	A2TS	POPTR_0017s00450	POPTR_0017s00470 (11)//POPTR_0017s00450 (11)	scaffold_17:152664-153448(-) (11)//scaffold_17:167835-168623(-) (11)	NA	O49621	MLO-like protein 1	AT4G02600.2	Seven transmembrane MLO family protein 	LOC_Os05g34550.1	"MLO domain containing protein, putative, expressed"	Medtr3g163760.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.7828.1.S1_at	A	A1TS	POPTR_0012s03030	POPTR_0012s03030 (9)	scaffold_12:2430989-2431713(-) (9)	NA	NA	NA	AT5G53620.3	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). 	LOC_Os08g43060.3	expressed protein	Medtr3g123170.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78376.1.S1_s_at	A	A1TS	POPTR_0018s08990	POPTR_0018s08990 (11)	scaffold_18:9883996-9885671(+) (11)	NA	Q9FYG3	Probable plastidic glucose transporter 2	AT1G67300.1	Major facilitator superfamily protein 	LOC_Os02g17500.3	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.78410.1.A1_at	A	A1TS	POPTR_0018s10470	POPTR_0018s10470 (10)	scaffold_18:11385823-11392114(+) (11)	NA	Q67YC9	Uncharacterized protein At4g14100	AT3G23760.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os07g09150.1	expressed protein	Medtr3g151440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78442.1.A1_at	A	A1TS	POPTR_0019s00300	POPTR_0019s00300 (11)	scaffold_19:90573-91679(-) (11)	NA	A5YVF1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	LOC_Os12g09580.1	"leafbladeless1, putative, expressed"	Medtr3g151680.1	"Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7845.1.A1_s_at	A	A1TS	POPTR_0001s32950	POPTR_0001s32950 (11)	scaffold_1:31220580-31220799(+) (11)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os02g52860.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr7g096810.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7845.3.S1_a_at	A	A1TS	POPTR_0001s08960	POPTR_0001s08960 (11)	scaffold_1:6861066-6861553(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g03810.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78476.1.A1_at	A	A1TS	POPTR_0008s09670	POPTR_0008s09670 (11)	scaffold_8:5969696-5970159(-) (11)	NA	Q9ZPR0	"Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial"	AT2G03690.1	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein 	LOC_Os04g57790.1	"ubiquinone biosynthesis protein COQ4, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0006744|ubiquinone biosynthetic process	NA	NA
PtpAffx.78493.1.S1_s_at	A	A1TS	POPTR_0002s09690	POPTR_0002s09690 (11)	scaffold_2:6945702-6946736(+) (11)	NA	NA	NA	AT1G34630.1	BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	LOC_Os03g09090.1	expressed protein	Medtr2g052140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78505.1.A1_at	A	A1TS	POPTR_0014s17590	POPTR_0014s17590 (10)	scaffold_14:13856131-13856874(-) (10)	NA	Q9SU40	Monocopper oxidase-like protein SKU5	AT5G48450.1	SKU5  similar 3 	LOC_Os01g01030.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.78518.1.A1_at	A	A1TS	POPTR_0010s02740	POPTR_0010s02740 (11)	scaffold_10:3196432-3196967(+) (11)	NA	Q8LBI9	Sugar transporter ERD6-like 16	AT5G18840.1	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr8g139840.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.7852.1.A1_at	A	A1TS	POPTR_0001s29190	POPTR_0001s29190 (11)	scaffold_1:27944835-27945106(+) (11)	NA	A1JNE0	Zinc transport protein zntB	AT2G04305.1	Magnesium transporter CorA-like family protein 	LOC_Os08g03600.1	expressed protein	Medtr2g010080.1	"metal ion transporter, putative "	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.78536.1.S1_at	A	A1TS	POPTR_0001s16210	POPTR_0001s16210 (10)	scaffold_1:13027098-13027640(+) (10)	NA	Q9XF63	RING-H2 finger protein ATL3	AT1G72310.1	RING/U-box superfamily protein 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78538.1.A1_at	A	A1TS	POPTR_0001s12500	POPTR_0001s12500 (11)	scaffold_1:9702707-9703098(+) (11)	NA	Q9STE8	"Protein TOC75-3, chloroplastic"	AT3G46740.1	translocon at the outer envelope membrane of chloroplasts 75-III 	LOC_Os03g16440.1	"outer membrane protein, OMP85 family, putative, expressed"	Medtr4g084320.1	"Bacterial surface antigen (D15); Chloroplast envelope protein translocase, IAP75 "	NA	NA	GO:0019867|outer membrane
PtpAffx.78558.1.A1_a_at	A	A1TS	POPTR_0015s06590	POPTR_0015s06590 (11)	scaffold_15:7527309-7527423(-) (11)	NA	NA	NA	AT5G35520.1	minichromosome instability 12 (mis12)-like 	LOC_Os02g40680.1	"mis12 protein, expressed"	Medtr8g115370.1	Mis12 	GO:0007067|mitosis	NA	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.78576.2.A1_a_at	A	A1TS	POPTR_0018s09070	POPTR_0018s09070 (11)	scaffold_18:9974946-9976109(+) (11)	NA	Q8K1A0	Methyltransferase-like protein 5	AT4G28830.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06730.1	"methyltransferase-like protein 5, putative, expressed"	Medtr1g039970.1	N-6 Adenine-specific DNA methylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78589.1.S1_at	A	A1TS	POPTR_0001s09890	POPTR_0001s09890 (11)	scaffold_1:7633722-7634522(-) (11)	NA	Q9M4A1	Meiotic recombination protein SPO11-2	AT1G63990.1	sporulation 11-2 	LOC_Os08g06050.1	"OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed"	Medtr5g010060.1	"DNA topoisomerase, type II; Winged helix repressor DNA-binding "	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0003824|catalytic activity	GO:0005694|chromosome
PtpAffx.78598.1.S1_at	A	A1TS	POPTR_0005s01460	POPTR_0005s01460 (11)	scaffold_5:954128-954522(+) (11)	NA	NA	NA	AT1G09320.1	agenet domain-containing protein 	LOC_Os05g04180.1	"agenet domain containing protein, putative, expressed"	Medtr2g037560.1	SH3; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.78608.1.S1_at	A	A1TS	POPTR_0003s20260	POPTR_0003s20260 (11)	scaffold_3:18791533-18792107(+) (11)	NA	Q0SE35	Glycerol-3-phosphate dehydrogenase [NAD(P)+] 1	AT3G07690.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os01g71280.1	"glycerol-3-phosphate dehydrogenase, putative, expressed"	Medtr4g118340.1	NAD-dependent glycerol-3-phosphate dehydrogenase 	GO:0005975|carbohydrate metabolic process||GO:0055114|oxidation reduction	"GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.78625.1.S1_at	A	A1TS	POPTR_0010s23850	POPTR_0010s23850 (11)	scaffold_10:20318501-20319763(-) (11)	NA	NA	NA	AT3G52180.1	dual specificity protein phosphatase (DsPTP1) family protein 	LOC_Os03g01750.2	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.78648.1.S1_at	A	A1TS	POPTR_0016s06410	POPTR_0016s06410 (10)	scaffold_16:4307749-4309264(+) (10)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.2	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.2	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.78658.1.A1_at	A	A1MS	POPTR_0011s02420	POPTR_0011s02420 (11)	scaffold_11:2304580-2306074(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G46190.1	RNA-binding KH domain-containing protein 	LOC_Os08g10030.2	"KH domain-containing protein, putative, expressed"	Medtr2g024360.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.78680.1.S1_at	A	A1TS	POPTR_0009s11980	POPTR_0009s11980 (9)	scaffold_9:9865489-9867102(+) (9)	NA	NA	NA	AT2G18360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g44960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g093180.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78712.1.S1_a_at	A	A1TS	POPTR_0003s08030	POPTR_0003s08030 (11)	scaffold_3:9485279-9485488(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7872.1.S1_s_at	A	A1TS	POPTR_0015s12080	POPTR_0015s12080 (11)	scaffold_15:12490342-12491090(-) (11)	NA	Q863B3	Staphylococcal nuclease domain-containing protein 1	AT5G07350.1	TUDOR-SN protein 1 	LOC_Os02g32350.2	"TUDOR protein with multiple SNc domains, putative, expressed"	Medtr3g151500.1	Tudor; Staphylococcus nuclease subtype 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds""||GO:0003676|nucleic acid binding"	NA
PtpAffx.78723.1.S1_at	A	A1TS	POPTR_0001s26180	POPTR_0001s26180 (10)	scaffold_1:25241835-25242397(-) (10)	NA	P27880	18.2 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78734.1.A1_at	A	A1TS	POPTR_0003s10820	POPTR_0003s10820 (11)	scaffold_3:11691306-11692439(-) (11)	NA	NA	NA	AT5G51400.1	PLAC8 family protein 	LOC_Os03g01210.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr7g041040.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7876.1.A1_at	A	A1TS	POPTR_0013s00500	POPTR_0013s00500 (9)	scaffold_13:215284-216319(+) (9)	NA	NA	NA	AT5G26770.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g04530.1	"IF, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78795.1.S1_at	A	A1TS	POPTR_0007s13350	POPTR_0007s13350 (10)	scaffold_7:13469733-13469963(+) (10)	NA	Q10137	Sec14 cytosolic factor	AT4G36490.1	SEC14-like 12 	LOC_Os02g24430.2	expressed protein	Medtr4g096250.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78798.1.S1_a_at	A	A1TS	POPTR_0019s15370	POPTR_0019s15370 (11)	scaffold_19:15892617-15893385(+) (11)	NA	Q86KK2	Bis(5'-adenosyl)-triphosphatase	AT5G58240.1	FRAGILE HISTIDINE TRIAD 	LOC_Os12g02730.1	"histidine triad family protein, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78829.1.S1_at	A	A1TS	POPTR_0012s09610	POPTR_0012s09610 (11)	scaffold_12:10585364-10585856(-) (11)	NA	NA	NA	AT5G50360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g13910.1	expressed protein	Medtr8g109620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78839.1.S1_at	A	A1TA	POPTR_0004s21420	POPTR_0004s21420 (11)	scaffold_4:20561390-20561717(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7885.1.S1_a_at	A	A3TS	POPTR_0004s14120	POPTR_0019s00210 (11)//POPTR_0261s00200 (11)//POPTR_0004s14120 (11)	scaffold_19:5412-6273(+) (11)//scaffold_261:420-1338(+) (11)//scaffold_4:14608259-14609385(+) (11)	NA	P80318	T-complex protein 1 subunit gamma	AT5G26360.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g34690.1	"T-complex protein, putative, expressed"	Medtr2g015240.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.7885.1.S1_at	A	A1TS	POPTR_0004s14120	POPTR_0004s14120 (11)	scaffold_4:14608216-14609410(+) (11)	NA	P80318	T-complex protein 1 subunit gamma	AT5G26360.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g34690.1	"T-complex protein, putative, expressed"	Medtr2g015240.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.7885.2.S1_at	A	A1TS	POPTR_0004s14120	POPTR_0004s14120 (11)	scaffold_4:14609559-14609869(+) (11)	POPTR_0019s00210 (6)//POPTR_0261s00200 (6)	P80318	T-complex protein 1 subunit gamma	AT5G26360.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g34690.1	"T-complex protein, putative, expressed"	Medtr2g015240.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.78869.1.S1_s_at	A	A1TS	POPTR_0022s00360	POPTR_0022s00360 (11)	scaffold_22:88377-88476(-) (11)	NA	Q8LAH7	12-oxophytodienoate reductase 1	AT1G76680.1	12-oxophytodienoate reductase 1 	LOC_Os06g11240.1	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006880.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.78875.1.S1_s_at	A	A1TS	POPTR_0015s05440	POPTR_0015s05440 (11)	scaffold_15:5793865-5795734(+) (11)	NA	NA	NA	AT1G53345.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in 75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37 (source: NCBI BLink). "	LOC_Os02g45950.1	expressed protein	Medtr4g121710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7888.3.S1_at	A	A1TS	POPTR_0009s12340	POPTR_0009s12340 (11)	scaffold_9:10076450-10077995(-) (11)	NA	Q6NPM8	"Phosphatase IMPL2, chloroplastic"	AT4G39120.1	myo-inositol monophosphatase like 2 	LOC_Os07g09330.1	"inositol-1-monophosphatase, putative, expressed"	Medtr3g162810.1	"Inositol monophosphatase; Histidinol-phosphate phosphatase, putative, inositol monophosphatase "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.78910.1.S1_s_at	A	A1TS	POPTR_0001s30800	POPTR_0001s30800 (11)	scaffold_1:29256881-29257184(+) (11)	NA	Q94C77	Receptor protein kinase-like protein At4g34220	AT4G34220.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g02250.1	"transposon protein, putative, unclassified, expressed"	Medtr7g076330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.78911.1.S1_at	A	A1TS	POPTR_0001s40290	POPTR_0001s40290 (11)	scaffold_1:39650833-39651438(+) (11)	NA	O49813	Olee1-like protein	AT1G29140.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os04g32680.1	"POEI20 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	CU651566_3.1	Pollen Ole e 1 allergen and extensin CU651566.9 19800-21791 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7892.1.A1_at	A	A1TS	POPTR_0009s08570	POPTR_0009s08570 (11)	scaffold_9:7800983-7801435(-) (11)	NA	Q93ZN9	"LL-diaminopimelate aminotransferase, chloroplastic"	AT4G33680.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g18810.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g122020.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.78923.1.S1_at	A	A1TS	POPTR_0001s16000	POPTR_0001s16000 (11)	scaffold_1:12836780-12837300(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78925.1.A1_s_at	A	A1TS	POPTR_0002s20560	POPTR_0002s20560 (11)	scaffold_2:16647132-16649398(+) (11)	NA	Q9VI10	Probable small nuclear ribonucleoprotein Sm D2	AT3G62840.2	Small nuclear ribonucleoprotein family protein 	LOC_Os05g24970.2	"LSM domain containing protein, expressed"	Medtr4g156540.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78955.1.S1_at	A	A1TS	POPTR_0002s10530	POPTR_0002s10530 (11)	scaffold_2:7616375-7617865(-) (11)	NA	O00189	AP-4 complex subunit mu-1	AT4G24550.2	Clathrin adaptor complexes medium subunit family protein 	LOC_Os07g42810.2	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g075050.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.7896.3.S1_a_at	A	A2TS	POPTR_0001s14310	POPTR_0001s14320 (11)//POPTR_0001s14310 (11)	scaffold_1:11255684-11255864(+) (11)//scaffold_1:11263309-11263489(+) (11)	NA	P48386	Chalcone synthase 1	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr3g105290.1	"Chalcone and stilbene synthases, C-terminal "	GO:0009058|biosynthetic process	GO:0008415|acyltransferase activity	NA
PtpAffx.7896.4.A1_a_at	A	A3TS	POPTR_0003s17550	POPTR_0003s17550 (11)//POPTR_0003s17530 (10)//POPTR_0003s17540 (9)	scaffold_3:16873452-16886938(+) (11)//scaffold_3:16879779-16886728(+) (10)//scaffold_3:16886749-16886967(+) (9)	NA	P48386	Chalcone synthase 1	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr3g105290.1	"Chalcone and stilbene synthases, C-terminal "	GO:0009058|biosynthetic process	GO:0008415|acyltransferase activity	NA
PtpAffx.78969.1.S1_at	A	A1TS	POPTR_0002s14010	POPTR_0002s14010 (11)	scaffold_2:10383463-10385807(+) (11)	NA	Q9VH78	"Probable dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,6-mannosyltransferase"	AT1G02145.3	homolog of asparagine-linked glycosylation 12 	LOC_Os04g46050.1	"Alg9-like mannosyltransferase protein, putative, expressed"	AC202489_8.1	Alg9-like mannosyltransferase AC202489.10 65337-49058 E EGN_Mt090430 200	GO:0006506|GPI anchor biosynthetic process	"GO:0016757|""transferase activity, transferring glycosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.78971.1.S1_at	A	A1TS	POPTR_0011s14450	POPTR_0011s14450 (11)	scaffold_11:16855180-16855928(+) (11)	NA	Q8GYH7	E3 SUMO-protein ligase MMS21	AT3G15150.1	RING/U-box superfamily protein 	LOC_Os05g48880.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78977.1.S1_s_at	A	A1TS	POPTR_0011s10870	POPTR_0011s10870 (11)	scaffold_11:13426671-13428678(-) (11)	NA	Q9FQ08	ATP-dependent DNA helicase 2 subunit KU70	AT1G16970.1	KU70 homolog 	LOC_Os07g08729.1	"ATP-dependent DNA helicase 2 subunit 1, putative, expressed"	Medtr1g147380.1	"Ku70/Ku80, N-terminal alpha/beta "	GO:0006303|double-strand break repair via nonhomologous end joining||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004003|ATP-dependent DNA helicase activity	GO:0005634|nucleus
PtpAffx.78979.1.S1_s_at	A	A1TS	POPTR_0001s09470	POPTR_0001s09470 (11)	scaffold_1:7226715-7227203(-) (11)	NA	NA	NA	AT4G00440.2	Protein of unknown function (DUF3741) 	LOC_Os03g01580.2	expressed protein	Medtr7g087380.1	"{, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78989.1.A1_at	A	A1TS	POPTR_0001s47400	POPTR_0001s47400 (11)	scaffold_1:47613943-47614026(-) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30700.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.7902.1.S1_a_at	A	A1TS	POPTR_0001s11560	POPTR_0001s11560 (11)	scaffold_1:8989016-8990153(-) (11)	NA	NA	NA	AT5G16950.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os06g08510.1	expressed protein	Medtr5g009590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7902.2.S1_at	A	A1TS	POPTR_0001s11560	POPTR_0001s11560 (11)	scaffold_1:8989121-8990208(-) (11)	NA	NA	NA	AT5G16950.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os06g08510.1	expressed protein	Medtr5g009590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79026.1.S1_at	A	A1TS	POPTR_0001s00790	POPTR_0001s00790 (11)	scaffold_1:641994-642248(-) (11)	NA	Q8VYT5	F-box protein At5g07670	AT5G07670.1	RNI-like superfamily protein 	LOC_Os02g44104.1	"F-box family protein, putative, expressed"	Medtr2g026110.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7903.1.A1_at	A	A1TS	POPTR_0001s12470	POPTR_0001s12470 (11)	scaffold_1:9692524-9692842(+) (11)	NA	Q54V77	CTP synthase	AT1G30820.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr8g084050.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.7903.2.A1_s_at	A	A1TS	POPTR_0003s15650	POPTR_0003s15650 (11)	scaffold_3:15415082-15415674(+) (11)	NA	Q54V77	CTP synthase	AT1G30820.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr8g084050.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.7905.1.A1_s_at	A	A1TS	POPTR_0008s07790	POPTR_0008s07790 (11)	scaffold_8:4779995-4780287(-) (11)	NA	Q9FQ19	Sister chromatid cohesion 1 protein 3	AT5G16270.1	sister chromatid cohesion 1 protein 4 	LOC_Os01g67250.2	"Rad21 / Rec8 like protein, putative, expressed"	Medtr7g090210.1	"Rad21/Rec8 like protein, C-terminal; Rad21/Rec8 like protein, N-terminal "	NA	NA	GO:0000228|nuclear chromosome
PtpAffx.79065.1.S1_s_at	A	A1TS	POPTR_0007s09740	POPTR_0007s09740 (11)	scaffold_7:9251527-9253955(-) (11)	NA	P55034	26S proteasome non-ATPase regulatory subunit 4	AT4G38630.1	regulatory particle non-ATPase 10 	LOC_Os03g13970.2	"26S proteasome non-ATPase regulatory subunit 4, putative, expressed"	Medtr5g022350.1	"von Willebrand factor, type A; Ubiquitin interacting motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79084.1.S1_at	A	A1TS	POPTR_0006s22950	POPTR_0006s22950 (11)	scaffold_6:21808958-21809120(-) (11)	NA	NA	NA	AT5G03880.1	Thioredoxin family protein 	LOC_Os08g44400.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr3g013180.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.7909.1.A1_at	A	A1TS	POPTR_0003s02840	POPTR_0003s02840 (11)	scaffold_3:2959347-2959668(+) (11)	NA	Q84WC6	Ubiquitin carboxyl-terminal hydrolase 7	AT3G21280.1	ubiquitin-specific protease 7 	LOC_Os01g36930.1	"ubiquitin carboxyl-terminal hydrolase 6, putative, expressed"	AC235757_28.1	"Ubiquitin; Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 AC235757.1 83788-89694 E EGN_Mt090430 200"	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.7909.2.A1_a_at	A	A1TS	POPTR_0003s02840	POPTR_0003s02840 (11)	scaffold_3:2958675-2959308(+) (11)	NA	Q84WC6	Ubiquitin carboxyl-terminal hydrolase 7	AT3G21280.1	ubiquitin-specific protease 7 	LOC_Os01g36930.1	"ubiquitin carboxyl-terminal hydrolase 6, putative, expressed"	AC235757_28.1	"Ubiquitin; Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 AC235757.1 83788-89694 E EGN_Mt090430 200"	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.7909.2.A1_at	A	A1MS	POPTR_0003s02840	POPTR_0003s02840 (11)	scaffold_3:2958520-2958682(+) (11)	NA	Q84WC6	Ubiquitin carboxyl-terminal hydrolase 7	AT3G21280.1	ubiquitin-specific protease 7 	LOC_Os01g36930.1	"ubiquitin carboxyl-terminal hydrolase 6, putative, expressed"	AC235757_28.1	"Ubiquitin; Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 AC235757.1 83788-89694 E EGN_Mt090430 200"	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.79110.2.S1_a_at	A	A1TS	POPTR_0015s04600	POPTR_0015s04600 (11)	scaffold_15:4798508-4805931(-) (11)	POPTR_0015s04590 (6)	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79128.1.S1_at	A	A1TS	POPTR_0006s24910	POPTR_0006s24910 (11)	scaffold_6:23417078-23418270(-) (11)	NA	Q8BTI8	Serine/arginine repetitive matrix protein 2	AT3G49601.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g51960.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79141.1.S1_at	A	A1MS	POPTR_0008s10870	POPTR_0008s10870 (11)	scaffold_8:6833760-6833802(-) (11)	NA	Q91YE6	Importin-9	AT1G26170.1	ARM repeat superfamily protein 	LOC_Os06g16280.1	expressed protein	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.79141.1.S1_s_at	A	A1TS	POPTR_0008s10870	POPTR_0008s10870 (11)	scaffold_8:6833661-6833774(-) (11)	NA	Q91YE6	Importin-9	AT1G26170.1	ARM repeat superfamily protein 	LOC_Os06g16280.1	expressed protein	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.79163.1.S1_at	A	A1TS	POPTR_0003s06830	POPTR_0003s06830 (9)	scaffold_3:8370464-8370901(-) (9)	NA	O35723	DnaJ homolog subfamily B member 3	AT3G14200.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g54130.2	"heat shock protein DnaJ, putative, expressed"	Medtr8g025850.2	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.7918.2.S1_at	A	A1TS	POPTR_0010s01700	POPTR_0010s01700 (9)	scaffold_10:1892320-1892353(+) (9)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
PtpAffx.7918.3.A1_a_at	A	A1TS	POPTR_0010s09640	POPTR_0010s09640 (11)	scaffold_10:10374131-10374278(+) (11)	NA	NA	NA	AT3G22530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g07670.1	expressed protein	Medtr5g006510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7918.4.A1_at	A	A1TA	POPTR_0010s01700	POPTR_0010s01700 (10)	scaffold_10:1892194-1892352(-) (10)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
PtpAffx.79188.1.S1_at	A	A1TS	POPTR_0003s05160	POPTR_0003s05160 (11)	scaffold_3:6363117-6363727(-) (11)	NA	Q94748	Probable dynein light chain	AT1G52240.2	RHO guanyl-nucleotide exchange factor 11 	LOC_Os01g55510.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr2g122840.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.79204.1.S1_at	A	A1MS	POPTR_0009s04640	POPTR_0009s04640 (9)	scaffold_9:4934433-4934662(+) (9)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT1G07350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g15890.2	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.79207.1.S1_at	A	A1TS	POPTR_0014s12580	POPTR_0014s12580 (10)	scaffold_14:9271259-9272422(+) (10)	NA	Q9UT12	Uncharacterized protein P8A3.02c	AT4G02485.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os11g43610.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr5g099220.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.79219.1.A1_at	A	A1TS	POPTR_0014s10040	POPTR_0014s10040 (11)	scaffold_14:7515016-7515566(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT4G00820.1	IQ-domain 17 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g067020.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7924.1.S1_at	A	A1TS	POPTR_0012s08350	POPTR_0012s08350 (11)	scaffold_12:9445153-9447797(+) (11)	NA	Q9FM04	GDSL esterase/lipase At5g62930	AT5G62930.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os10g33690.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g018940.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.7925.1.S1_at	A	A1TS	POPTR_0004s14280	POPTR_0004s14280 (11)	scaffold_4:14738089-14739295(-) (11)	NA	Q949R4	"4,5-DOPA dioxygenase extradiol-like protein"	AT4G15093.1	catalytic LigB subunit of aromatic ring-opening dioxygenase family 	LOC_Os01g65680.1	"4,5-DOPA dioxygenase extradiol, putative, expressed"	Medtr6g070870.1	"Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B "	GO:0006725|cellular aromatic compound metabolic process	GO:0008198|ferrous iron binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.79261.1.S1_a_at	A	A1TS	POPTR_0010s17680	POPTR_0010s17680 (11)	scaffold_10:16172611-16173906(+) (11)	NA	NA	NA	AT3G19900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3067 (InterPro:IPR021420); Has 276 Blast hits to 276 proteins in 83 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). 	LOC_Os02g58310.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79261.2.S1_at	A	A1TS	POPTR_0010s17680	POPTR_0010s17680 (11)	scaffold_10:16173416-16173924(+) (11)	NA	NA	NA	AT3G19900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3067 (InterPro:IPR021420); Has 276 Blast hits to 276 proteins in 83 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). 	LOC_Os02g58310.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79264.1.A1_s_at	A	A1TS	POPTR_0002s25310	POPTR_0002s25310 (11)	scaffold_2:22423624-22424825(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79296.1.S1_s_at	A	A1TS	POPTR_0005s12790	POPTR_0005s12790 (11)	scaffold_5:9597442-9597632(-) (11)	NA	Q94A43	BES1/BZR1 homolog protein 2	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79296.4.S1_s_at	A	A1TS	POPTR_0007s12370	POPTR_0007s12370 (11)	scaffold_7:12696449-12697471(+) (11)	NA	Q94A43	BES1/BZR1 homolog protein 2	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.793.2.S1_a_at	A	A1TS	POPTR_0003s17020	POPTR_0003s17020 (11)	scaffold_3:16524503-16525410(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7931.1.A1_a_at	A	A1TS	POPTR_0006s11800	POPTR_0006s11800 (11)	scaffold_6:8974519-8974884(-) (11)	NA	P42896	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
PtpAffx.7931.1.A1_s_at	A	A1TS	POPTR_0006s11800	POPTR_0006s11800 (11)	scaffold_6:8973905-8974509(-) (11)	NA	P42896	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
PtpAffx.7932.1.S1_a_at	A	A1TS	POPTR_0014s18320	POPTR_0014s18320 (11)	scaffold_14:15392630-15393572(-) (11)	NA	Q12296	Protein MAM3	AT1G47330.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g03430.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7932.2.S1_a_at	A	A1TS	POPTR_0014s18320	POPTR_0014s18320 (11)	scaffold_14:15390611-15390881(-) (11)	NA	Q12296	Protein MAM3	AT1G47330.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g03430.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7932.3.S1_at	A	A1TS	POPTR_0014s18320	POPTR_0014s18320 (11)	scaffold_14:15391759-15392634(-) (11)	NA	Q12296	Protein MAM3	AT1G47330.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g03430.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7932.4.S1_a_at	A	A1TS	POPTR_0014s18320	POPTR_0014s18320 (10)	scaffold_14:15394169-15394896(-) (10)	NA	Q12296	Protein MAM3	AT1G47330.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g03430.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79356.1.S1_at	A	A1TS	POPTR_0008s04800	POPTR_0008s04800 (11)	scaffold_8:2779879-2780335(+) (11)	NA	NA	NA	AT5G13560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). 	LOC_Os05g06980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79358.1.S1_at	A	A1TS	POPTR_0008s22260	POPTR_0008s22260 (11)	scaffold_8:16665808-16667946(-) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g06280.2	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr8g138640.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.79359.1.S1_s_at	A	A1TS	POPTR_0002s16060	POPTR_0002s16060 (11)	scaffold_2:11954560-11955018(+) (11)	NA	NA	NA	AT4G00500.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.7936.1.A1_at	A	A1TS	POPTR_0005s04490	POPTR_0005s04490 (11)	scaffold_5:3002052-3003226(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.7936.2.A1_a_at	A	A1TS	POPTR_0005s04490	POPTR_0005s04490 (11)	scaffold_5:3004954-3005397(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.7936.2.A1_at	A	A1MS	POPTR_0005s04490	POPTR_0005s04490 (10)	scaffold_5:3004691-3005335(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.7937.1.A1_at	A	A1TS	POPTR_0015s05350	POPTR_0015s05350 (11)	scaffold_15:5720282-5720888(+) (11)	NA	Q9SCX8	Purple acid phosphatase 17	AT3G17790.1	purple acid phosphatase 17 	LOC_Os03g13540.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr4g154540.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.79371.1.S1_at	A	A1TS	POPTR_0002s19340	POPTR_0002s19340 (10)	scaffold_2:15298256-15298724(-) (10)	POPTR_0014s11320 (8)	O22899	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G62310.1	RNA helicase family protein 	LOC_Os03g19960.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr1g106350.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.794.1.S1_s_at	A	A1TS	POPTR_0012s11630	POPTR_0012s11630 (9)	scaffold_12:11977851-11978102(-) (9)	NA	P54151	Peptide methionine sulfoxide reductase	AT4G25130.1	peptide met sulfoxide reductase 4 	LOC_Os10g41400.1	"peptide methionine sulfoxide reductase, putative, expressed"	Medtr5g099990.1	Methionine sulfoxide reductase A 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0055114|oxidation reduction	"GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor"""	NA
PtpAffx.79409.1.S1_s_at	A	A1TS	POPTR_0009s03790	POPTR_0009s03790 (11)	scaffold_9:4378148-4378598(+) (11)	NA	Q9XE58	Scarecrow-like protein 14	AT1G07530.1	SCARECROW-like 14 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7948.1.S1_at	A	A1TS	POPTR_0010s16440	POPTR_0010s16440 (10)	scaffold_10:15410550-15411013(+) (10)	NA	O48845	Probable cytochrome b5 isoform 2	AT1G26340.1	cytochrome B5 isoform A 	LOC_Os05g01820.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr5g048270.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.795.1.A1_at	A	A1TS	POPTR_0007s10050	POPTR_0007s10050 (10)	scaffold_7:9794832-9795317(+) (11)	NA	NA	NA	AT5G67390.2	unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 186 Blast hits to 186 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). 	LOC_Os03g40770.1	expressed protein	Medtr8g099360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7950.1.A1_a_at	A	A1MS	POPTR_0001s22780	POPTR_0001s22780 (11)	scaffold_1:21674490-21674728(+) (11)	NA	Q99020	Heterogeneous nuclear ribonucleoprotein A/B	AT2G41060.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g16090.1	"RNA binding protein, putative, expressed"	Medtr5g095270.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.7950.1.A1_at	A	A1MS	POPTR_0001s22780	POPTR_0001s22780 (11)	scaffold_1:21674752-21674972(+) (11)	NA	Q99020	Heterogeneous nuclear ribonucleoprotein A/B	AT2G41060.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g16090.1	"RNA binding protein, putative, expressed"	Medtr5g095270.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.79508.1.S1_at	A	A1TS	POPTR_0003s18570	POPTR_0003s18570 (11)	scaffold_3:17609974-17610607(+) (11)	NA	Q6RJS2	Deoxyhypusine synthase	AT5G05920.1	deoxyhypusine synthase 	LOC_Os03g52970.3	"deoxyhypusine synthase, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0044281|small molecule metabolic process||GO:0008612|peptidyl-lysine modification to hypusine	NA	NA
PtpAffx.79516.1.S1_at	A	A1TS	POPTR_0002s23000	POPTR_0002s23000 (10)	scaffold_2:20263115-20263617(-) (10)	NA	Q8L9T5	RING-H2 finger protein ATL2	AT3G16720.1	TOXICOS EN LEVADURA 2 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7954.1.S1_at	A	A1TS	POPTR_0006s14900	POPTR_0006s14900 (11)	scaffold_6:12383466-12383998(-) (11)	NA	Q8S8S7	U-box domain-containing protein 34	AT5G57035.1	U-box domain-containing protein kinase family protein 	LOC_Os06g37620.1	"protein kinase family protein, putative, expressed"	Medtr3g009640.2	Protein kinase; U box; ; 	GO:0006950|response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.79568.1.S1_at	A	A1TS	POPTR_0002s05970	POPTR_0002s05970 (11)	scaffold_2:3956250-3956383(+) (11)	NA	Q9SHJ3	Callose synthase 7	AT1G06490.1	glucan synthase-like 7 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.79572.1.A1_at	A	A1TS	POPTR_0002s03360	POPTR_0002s03360 (11)	scaffold_2:2079922-2079998(+) (11)	NA	Q2RAC5	Cyclin-T1-3	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79577.1.A1_at	A	A1TS	POPTR_0003s10880	POPTR_0003s10880 (9)	scaffold_3:11742046-11742521(+) (9)	NA	Q8VYC8	E3 ubiquitin protein ligase RIN2	AT4G25230.2	RPM1 interacting protein 2 	LOC_Os07g30100.1	"RIN3, putative, expressed"	Medtr3g009010.1	"Zinc finger, RING-type; Ubiquitin system component Cue "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79579.1.S1_at	A	A1TS	POPTR_0001s15770	POPTR_0001s15770 (10)	scaffold_1:12595748-12595786(-) (10)//scaffold_1178:3508-3555(-) (11)//scaffold_1796:1591-1638(+) (11)//scaffold_4:1642152-1642199(-) (11)//scaffold_53:163616-163663(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79583.1.A1_at	A	A1TS	POPTR_0007s14270	POPTR_0007s14270 (11)	scaffold_7:14113263-14113832(+) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT5G10490.1	MSCS-like 2 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.79585.1.S1_at	A	A1MS	POPTR_0006s13260	POPTR_0006s13260 (11)	scaffold_6:10506082-10506407(-) (11)	NA	NA	NA	AT5G03110.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: protamine P1 family protein (TAIR:AT2G37100.1); Has 81 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g121040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79585.2.S1_at	A	A1TS	POPTR_0006s13260	POPTR_0006s13260 (11)	scaffold_484:14734-14990(-) (11)//scaffold_6:10505335-10505591(-) (11)	NA	NA	NA	AT5G03110.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: protamine P1 family protein (TAIR:AT2G37100.1); Has 81 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g121040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79585.2.S1_s_at	A	A1TS	POPTR_0006s13260	POPTR_0006s13260 (11)	scaffold_484:14824-15078(-) (11)//scaffold_6:10505425-10505679(-) (11)	NA	NA	NA	AT5G03110.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: protamine P1 family protein (TAIR:AT2G37100.1); Has 81 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g121040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7959.1.S1_at	A	A1TS	POPTR_0012s05320	POPTR_0012s05320 (9)	scaffold_12:4931574-4931995(+) (9)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g158240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79594.1.S1_s_at	A	A1TS	POPTR_0012s13780	POPTR_0012s13780 (11)	scaffold_12:13788361-13789318(-) (11)	NA	Q1PSI9	L-idonate 5-dehydrogenase	AT5G51970.2	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os08g43190.2	"dehydrogenase, putative, expressed"	AC229727_23.1	"Alcohol dehydrogenase superfamily, zinc-containing; AC229727.6 129240-119234 E EGN_Mt090430 200"	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.796.1.A1_at	A	A1TS	POPTR_0001s36700	POPTR_0001s36700 (11)	scaffold_1:35405887-35405921(+) (11)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
PtpAffx.796.1.A1_s_at	A	A1TS	POPTR_0001s36700	POPTR_0001s36700 (11)	scaffold_1:35404912-35405814(+) (11)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
PtpAffx.79606.1.S1_at	A	A1TS	POPTR_0012s00760	POPTR_0012s00760 (11)	scaffold_12:426880-427989(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G24590.2	TCV-interacting protein 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.7961.1.S1_at	A	A1TS	POPTR_0019s13300	POPTR_0019s13300 (10)	scaffold_19:14240640-14241065(+) (10)	NA	Q9M0I2	Expansin-B3	AT4G28250.1	expansin B3 	LOC_Os02g42650.1	"expansin precursor, putative, expressed"	Medtr4g036120.1	"Major pollen allergen Lol pI; Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79721.1.S1_s_at	A	A1TS	POPTR_0010s00410	POPTR_0010s00410 (11)	scaffold_10:195528-195884(+) (11)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT3G17430.1	Nucleotide-sugar transporter family protein 	LOC_Os03g49570.1	"domain of unknown function, DUF250 domain containing protein, expressed"	Medtr8g134090.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7974.1.S1_at	A	A1TS	POPTR_0013s14470	POPTR_0013s14470 (11)	scaffold_13:14638448-14643076(-) (11)	NA	O75912	Diacylglycerol kinase iota	AT2G20900.2	diacylglycerol kinase 5 	LOC_Os04g54200.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.79757.1.S1_at	A	A1TS	POPTR_0009s06290	POPTR_0009s06290 (9)	scaffold_9:6087532-6088566(+) (9)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.79757.1.S1_s_at	A	A1TS	POPTR_0009s06290	POPTR_0009s06290 (11)	scaffold_9:6087580-6088474(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.79770.1.A1_at	A	A1TS	POPTR_0006s29130	POPTR_0006s29130 (11)	scaffold_6:26599086-26599411(+) (11)	NA	Q941D3	"Probable plastid-lipid-associated protein 8, chloroplastic"	AT5G19940.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g51792.1	"PAP fibrillin family domain containing protein, expressed"	NA	NA	NA	GO:0005198|structural molecule activity	NA
PtpAffx.79778.1.S1_at	A	A1TS	POPTR_0007s01200	POPTR_0007s01200 (11)	scaffold_7:640347-640710(-) (11)	NA	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79787.1.S1_at	A	A3TS	POPTR_0004s20370	POPTR_0004s20370 (11)//POPTR_0103s00200 (11)//POPTR_0004s20400 (11)	scaffold_103:26733-26935(-) (11)//scaffold_4:19951392-19951594(-) (11)//scaffold_4:19967790-19967995(-) (11)	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT1G16130.1	wall associated kinase-like 2 	LOC_Os02g42160.1	OsWAK15 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.79803.1.S1_at	A	A1TS	POPTR_0004s12440	POPTR_0004s12440 (10)	scaffold_4:11545402-11545914(+) (10)	NA	Q3B561	UPF0301 protein Plut_0637	AT3G29240.2	Protein of unknown function (DUF179) 	LOC_Os10g18370.1	"transcriptional regulator, putative, expressed"	Medtr7g011120.1	Protein of unknown function DUF179 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79804.1.S1_at	A	A1TS	POPTR_0011s14900	POPTR_0011s14900 (11)	scaffold_11:17147385-17148209(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g086950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79839.1.S1_s_at	A	A1TS	POPTR_0006s04210	POPTR_0006s04210 (11)	scaffold_6:2876670-2877770(-) (11)	NA	Q84TJ0	Probable methyltransferase PMT6	AT3G10200.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g31480.2	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.7984.1.S1_at	A	A1TS	POPTR_0006s14510	POPTR_0006s14510 (11)	scaffold_6:11847798-11847888(-) (11)	NA	O04011	Auxin-binding protein ABP20	AT5G20630.1	germin 3 	LOC_Os08g35760.1	"Cupin domain containing protein, expressed"	Medtr8g024770.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.7984.1.S1_s_at	A	A1TS	POPTR_0006s14510	POPTR_0006s14510 (11)	scaffold_6:11847425-11847899(-) (11)	NA	O04011	Auxin-binding protein ABP20	AT5G20630.1	germin 3 	LOC_Os08g35760.1	"Cupin domain containing protein, expressed"	Medtr8g024770.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.79840.1.S1_at	A	A1TS	POPTR_0010s09730	POPTR_0010s09730 (10)	scaffold_10:10404281-10404762(+) (11)	NA	NA	NA	AT1G05420.1	ovate family protein 12 	LOC_Os03g06350.1	"DUF623 domain containing protein, expressed"	Medtr1g086250.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79842.1.S1_at	A	A1TS	POPTR_0019s05580	POPTR_0019s05580 (9)	scaffold_19:5937864-5938839(+) (9)	NA	Q0IHH9	Speckle-type POZ protein B	AT3G03740.1	BTB-POZ and MATH domain 4 	LOC_Os03g57854.1	"MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr5g094610.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.79896.1.A1_at	A	A1TS	POPTR_0006s26160	POPTR_0006s26160 (9)	scaffold_6:24445756-24446260(+) (11)	NA	NA	NA	AT5G11460.1	Protein of unknown function (DUF581) 	LOC_Os01g08520.1	"DUF581 domain containing protein, expressed"	Medtr3g135880.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79902.1.S1_at	A	A1TS	POPTR_0010s19710	POPTR_0010s19710 (11)	scaffold_10:17544686-17545626(-) (11)	NA	Q42569	Cytochrome P450 90A1	AT5G05690.2	Cytochrome P450 superfamily protein 	LOC_Os12g04480.1	"cytochrome P450, putative, expressed"	Medtr5g089930.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.79915.1.S1_s_at	A	A1TS	POPTR_0006s19000	POPTR_0006s19000 (11)	scaffold_6:17837315-17837573(-) (11)	NA	Q9ZV48	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11"	AT2G18700.1	trehalose phosphatase/synthase 11 	LOC_Os02g54820.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr8g127910.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.79922.1.S1_s_at	A	A1TS	POPTR_0003s15980	POPTR_0003s15980 (11)	scaffold_3:15628672-15632787(+) (11)	NA	NA	NA	AT5G13390.1	no exine formation 1 	LOC_Os11g32470.1	"NEF1, putative, expressed"	Medtr7g006260.1	"NEF1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7994.1.S1_at	A	A1TS	POPTR_0011s15220	POPTR_0011s15220 (11)	scaffold_11:17336973-17338057(+) (11)	NA	NA	NA	AT2G45530.1	RING/U-box superfamily protein 	LOC_Os10g34030.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79954.1.S1_s_at	A	A1TS	POPTR_0004s02050	POPTR_0004s02050 (11)	scaffold_4:1293336-1294839(+) (11)	NA	Q792Q4	Cysteine-rich PDZ-binding protein	AT1G61780.1	postsynaptic protein-related 	LOC_Os08g09180.1	"postsynaptic protein CRIPT, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7996.1.S1_at	A	A1TS	POPTR_0003s05540	POPTR_0003s05540 (11)	scaffold_3:6873701-6873942(+) (11)	NA	Q6N069	"N-alpha-acetyltransferase 16, NatA auxiliary subunit"	AT1G80410.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g43030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g123340.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7997.1.S1_at	A	A1TS	POPTR_0014s10260	POPTR_0014s10260 (11)	scaffold_14:7686639-7687114(+) (11)	NA	Q6R0H1	Protein LHY	AT1G01060.5	Homeodomain-like superfamily protein 	LOC_Os08g06110.5	"MYB family transcription factor, putative, expressed"	Medtr7g146200.1	"Ankyrin, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7998.1.A1_at	A	A1TS	POPTR_0019s14050	POPTR_0019s14050 (11)	scaffold_19:14813478-14813811(+) (11)	NA	Q7XAB8	"Protein THYLAKOID FORMATION1, chloroplastic"	AT2G20890.1	photosystem II reaction center PSB29 protein 	LOC_Os07g37250.1	"THYLAKOID FORMATION1, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7998.2.S1_s_at	A	A1TS	POPTR_0013s14450	POPTR_0013s14450 (11)	scaffold_13:14630961-14631796(+) (11)	NA	Q9SKT0	"Protein THYLAKOID FORMATION 1, chloroplastic"	AT2G20890.1	photosystem II reaction center PSB29 protein 	LOC_Os07g37250.1	"THYLAKOID FORMATION1, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80010.1.S1_s_at	A	A1TS	POPTR_0007s05800	POPTR_0007s05800 (11)	scaffold_7:3949922-3950991(+) (11)	NA	NA	NA	AT1G78020.1	Protein of unknown function (DUF581) 	LOC_Os09g20240.1	"DUF581 domain containing protein, expressed"	Medtr3g101220.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80031.1.A1_s_at	A	A1TS	POPTR_0016s12100	POPTR_0016s12100 (11)	scaffold_16:11418781-11419405(+) (11)	NA	Q9FEL7	Auxin transporter-like protein 2	AT2G38120.1	Transmembrane amino acid transporter family protein 	LOC_Os01g63770.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g024670.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80036.1.S1_at	A	A1TS	POPTR_0017s08160	POPTR_0017s08160 (10)	scaffold_17:6604934-6605170(+) (10)	NA	Q56YJ8	Transcription factor FAMA	AT3G24140.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g50900.1	"helix-loop-helix DNA-binding protein, putative"	Medtr3g150170.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.80038.2.A1_a_at	A	A1TS	POPTR_0001s19000	POPTR_0001s19000 (11)	scaffold_1:16241433-16245017(-) (11)	NA	NA	NA	AT1G15215.2	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g29020.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g070910.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80060.1.S1_at	A	A1TS	POPTR_0002s07260	POPTR_0002s07260 (10)	scaffold_2:4966262-4966606(+) (10)	NA	Q9FH05	Serine carboxypeptidase-like 42	AT5G42240.1	serine carboxypeptidase-like 42 	LOC_Os11g10750.1	"OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr5g080870.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.80063.1.S1_at	A	A1TS	POPTR_0014s18510	POPTR_0014s18510 (11)	scaffold_14:15732560-15732782(-) (11)	NA	Q9FJK7	Cyclin-C1-2	AT5G48630.1	Cyclin family protein 	LOC_Os09g32680.2	"cyclin, putative, expressed"	Medtr7g062090.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80063.2.S1_at	A	A1TA	POPTR_0014s18510	POPTR_0014s18510 (11)	scaffold_14:15732377-15732832(+) (11)	NA	Q9FJK7	Cyclin-C1-2	AT5G48630.1	Cyclin family protein 	LOC_Os09g32680.2	"cyclin, putative, expressed"	Medtr7g062090.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80063.3.A1_s_at	A	A1TS	POPTR_0002s24820	POPTR_0002s24820 (11)	scaffold_2:22070170-22072942(+) (11)	NA	Q9FJK7	Cyclin-C1-2	AT5G48630.1	Cyclin family protein 	LOC_Os09g32680.1	"cyclin, putative, expressed"	Medtr7g062090.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80067.1.A1_at	A	A1TS	POPTR_0016s09990	POPTR_0016s09990 (11)	scaffold_16:8126662-8126886(+) (11)	NA	Q93YV9	F-box protein SKIP8	AT3G09250.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os02g54710.1	expressed protein	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.80069.1.S1_s_at	A	A1TS	POPTR_0004s14820	POPTR_0004s14820 (11)	scaffold_4:15481106-15481720(+) (11)	POPTR_0009s10450 (6)	Q9LJK2	Abscisic acid 8'-hydroxylase 4	AT3G19270.1	"cytochrome P450, family 707, subfamily A, polypeptide 4 "	LOC_Os09g28390.1	"cytochrome P450, putative, expressed"	Medtr4g129760.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.80071.1.S1_at	A	A1TS	POPTR_0015s09090	POPTR_0015s09090 (11)	scaffold_15:10414089-10414755(+) (11)	NA	P47140	Altered inheritance rate of mitochondria protein 25	AT2G04940.1	scramblase-related 	LOC_Os04g51080.1	"scramblase, putative, expressed"	Medtr4g106810.1	Scramblase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80076.1.S1_at	A	A1TS	POPTR_0001s28390	POPTR_0001s28390 (11)	scaffold_1:27203269-27203342(+) (11)	NA	O81117	Cytochrome P450 94A1	AT3G56630.1	"cytochrome P450, family 94, subfamily D, polypeptide 2 "	LOC_Os01g58960.1	"cytochrome P450, putative, expressed"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.80080.1.S1_at	A	A1TS	POPTR_0007s02090	POPTR_0007s02090 (11)	scaffold_7:1227866-1227994(-) (11)	NA	Q2KIJ2	UPF0558 protein C1orf156 homolog	AT2G43320.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g41500.2	expressed protein	Medtr2g118160.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80082.1.S1_at	A	A1TS	POPTR_0016s02620	POPTR_0016s02620 (11)	scaffold_16:1293005-1293673(+) (11)	NA	Q9SG80	Alpha-L-arabinofuranosidase 1	AT3G10740.1	alpha-L-arabinofuranosidase 1 	LOC_Os12g03470.1	"alpha-N-arabinofuranosidase A, putative, expressed"	Medtr7g105210.1	"alpha-L-arabinofuranosidase protein, putative "	GO:0044262|cellular carbohydrate metabolic process||GO:0046373|L-arabinose metabolic process||GO:0044281|small molecule metabolic process	GO:0046556|alpha-N-arabinofuranosidase activity	NA
PtpAffx.80082.1.S1_s_at	A	A1TS	POPTR_0016s02620	POPTR_0016s02620 (11)	scaffold_16:1293674-1294448(+) (11)	NA	Q9SG80	Alpha-L-arabinofuranosidase 1	AT3G10740.1	alpha-L-arabinofuranosidase 1 	LOC_Os12g03470.1	"alpha-N-arabinofuranosidase A, putative, expressed"	Medtr7g105210.1	"alpha-L-arabinofuranosidase protein, putative "	GO:0044262|cellular carbohydrate metabolic process||GO:0046373|L-arabinose metabolic process||GO:0044281|small molecule metabolic process	GO:0046556|alpha-N-arabinofuranosidase activity	NA
PtpAffx.8009.1.S1_s_at	A	A1TS	POPTR_0009s09760	POPTR_0009s09760 (9)	scaffold_9:8559549-8559947(+) (9)	NA	NA	NA	AT2G15220.1	Plant basic secretory protein (BSP) family protein 	LOC_Os10g34920.1	"secretory protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80093.1.S1_s_at	A	A1TS	POPTR_0005s15200	POPTR_0005s15200 (11)	scaffold_5:11971962-11972538(+) (11)	NA	P82861	"NADPH:adrenodoxin oxidoreductase, mitochondrial"	AT4G32360.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g17700.1	"pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed"	Medtr4g159300.1	NAD-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80095.1.S1_at	A	A1TS	POPTR_0003s20100	POPTR_0003s20100 (11)	scaffold_3:18693810-18695074(-) (11)	NA	Q9LPR8	Scarecrow-like protein 3	AT1G50420.1	scarecrow-like 3 	LOC_Os01g71970.1	"GRAS family transcription factor containing protein, expressed"	Medtr5g009100.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80104.1.S1_at	A	A1TS	POPTR_0010s01490	POPTR_0010s01490 (11)	scaffold_10:1617397-1617742(-) (11)	NA	P11182	"Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial"	AT3G06850.2	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os01g21160.2	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.80109.1.S1_s_at	A	A1TS	POPTR_0001s02880	POPTR_0001s02880 (11)	scaffold_1:2275378-2277371(-) (11)	NA	Q9FUR2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 2"	AT4G18010.2	myo-inositol polyphosphate 5-phosphatase 2 	LOC_Os01g51890.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr5g014290.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80113.1.S1_s_at	A	A1TS	POPTR_0003s14780	POPTR_0003s14780 (11)	scaffold_3:14764997-14765307(+) (11)	NA	C0LGH2	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	AT1G56145.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os08g10290.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.8013.1.A1_at	A	A1TS	POPTR_0008s08600	POPTR_0008s08600 (11)	scaffold_8:5331204-5331767(-) (11)	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT2G02970.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os08g33850.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g044090.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.80142.1.S1_at	A	A1MS	POPTR_0010s21970	POPTR_0010s21970 (10)	scaffold_10:19080127-19080536(-) (10)	NA	NA	NA	AT5G13560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). 	LOC_Os05g06980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8015.1.S1_at	A	A1TS	POPTR_0012s09000	POPTR_0012s09000 (9)	scaffold_12:10075289-10075631(-) (9)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os03g05730.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.80156.1.S1_at	A	A1MS	POPTR_0001s34190	POPTR_0001s34190 (11)	scaffold_1:32318320-32318845(-) (11)	NA	NA	NA	AT3G01780.1	ARM repeat superfamily protein 	LOC_Os02g55010.1	expressed protein	Medtr8g142250.1	Calcium-binding EF-hand; Heme-binding A 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8017.1.S1_s_at	A	A1TS	POPTR_0002s15550	POPTR_0002s15550 (9)	scaffold_2:11612390-11612976(+) (9)	NA	Q52QH4	NAC domain-containing protein 68	AT1G33060.1	NAC 014 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.8018.1.A1_s_at	A	A1TS	POPTR_0015s08180	POPTR_0015s08180 (11)	scaffold_15:9436215-9437755(-) (11)	NA	Q7SXP8	Mannose-1-phosphate guanyltransferase alpha-B	AT1G74910.2	ADP-glucose pyrophosphorylase family protein 	LOC_Os03g11050.1	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr6g009470.1	Bacterial transferase hexapeptide repeat 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.8018.2.A1_s_at	A	A1TS	POPTR_0015s08180	POPTR_0015s08180 (11)	scaffold_15:9440227-9440609(-) (11)	NA	Q7SXP8	Mannose-1-phosphate guanyltransferase alpha-B	AT1G74910.2	ADP-glucose pyrophosphorylase family protein 	LOC_Os03g11050.1	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr6g009470.1	Bacterial transferase hexapeptide repeat 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.8018.3.S1_s_at	A	A1MS	POPTR_0015s08180	POPTR_0015s08180 (11)	scaffold_15:9441388-9441694(-) (11)	NA	Q7SXP8	Mannose-1-phosphate guanyltransferase alpha-B	AT1G74910.2	ADP-glucose pyrophosphorylase family protein 	LOC_Os03g11050.1	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr6g009470.1	Bacterial transferase hexapeptide repeat 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.80187.1.S1_a_at	A	A1MS	POPTR_0006s01170	POPTR_0006s01170 (11)	scaffold_6:644387-644660(-) (11)	NA	Q3TIX9	U4/U6.U5 tri-snRNP-associated protein 2	AT4G22350.2	Ubiquitin C-terminal hydrolases superfamily protein 	LOC_Os09g24250.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr4g106790.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.802.2.S1_at	A	A1TS	POPTR_0016s14960	POPTR_0016s14960 (11)	scaffold_16:14024945-14025440(-) (11)	NA	Q9ZVI6	Protein LURP-one-related 8	AT2G38640.1	Protein of unknown function (DUF567) 	LOC_Os11g02750.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126520.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80204.1.S1_at	A	A1MS	POPTR_0010s23290	POPTR_0010s23290 (9)	scaffold_10:19892127-19892841(-) (9)	NA	Q500Z2	Probable S-acyltransferase At5g04270	AT5G04270.1	DHHC-type zinc finger family protein 	LOC_Os01g62620.1	"DHHC zinc finger domain containing protein, expressed"	Medtr1g120410.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.80209.1.S1_at	A	A1TS	POPTR_0003s15430	POPTR_0003s15430 (10)	scaffold_3:15206175-15206611(-) (10)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g58630.1	"pentatricopeptide repeat, putative, expressed"	Medtr7g134520.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80222.1.S1_at	A	A1TS	POPTR_0014s03380	POPTR_0014s03380 (9)	scaffold_14:2718626-2719051(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80225.1.A1_s_at	A	A1TS	POPTR_0010s17690	POPTR_0010s17690 (11)	scaffold_10:16182623-16183109(+) (11)	NA	O60100	Probable importin subunit beta-4	AT4G27640.1	ARM repeat superfamily protein 	LOC_Os03g15540.1	"HEAT repeat family protein, putative, expressed"	Medtr2g006800.1	Armadillo-like helical 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.80241.1.S1_at	A	A1TS	POPTR_0013s01580	POPTR_0013s01580 (9)	scaffold_13:897405-897860(+) (9)	NA	NA	NA	AT3G10020.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os11g05170.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80252.1.S1_at	A	A1TS	POPTR_0001s20870	POPTR_0001s20870 (11)	scaffold_1:19113767-19115673(-) (11)	NA	NA	NA	AT1G52510.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os04g55180.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr4g005710.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80257.1.S1_at	A	A1TS	POPTR_0002s10590	POPTR_0002s10590 (11)	scaffold_2:7676984-7677045(+) (11)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.2	Cysteine proteinases superfamily protein 	LOC_Os05g11770.1	"ulp1 protease family protein, putative, expressed"	Medtr3g149330.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.80257.1.S1_s_at	A	A1TS	POPTR_0002s10590	POPTR_0002s10590 (11)	scaffold_2:7677043-7678066(+) (11)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.2	Cysteine proteinases superfamily protein 	LOC_Os05g11770.1	"ulp1 protease family protein, putative, expressed"	Medtr3g149330.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.80258.1.S1_at	A	A1TS	POPTR_0004s16880	POPTR_0004s16880 (11)	scaffold_4:17247739-17247916(-) (11)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr3g163040.1	"Calcium-binding EF-hand; SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.80260.1.S1_at	A	A1TS	POPTR_0008s09110	POPTR_0008s09110 (10)	scaffold_8:5645764-5645910(+) (10)	NA	NA	NA	AT3G11810.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03330.1); Has 141 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g15520.2	expressed protein	Medtr4g116020.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80268.1.A1_at	A	A1TS	POPTR_0003s12940	POPTR_0003s12940 (11)	scaffold_3:13363919-13364477(-) (11)	NA	NA	NA	AT5G41330.1	BTB/POZ domain with WD40/YVTN repeat-like protein 	LOC_Os07g23720.1	"B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed"	Medtr7g104990.1	K+ channel tetramerisation 	GO:0006813|potassium ion transport	GO:0005249|voltage-gated potassium channel activity	GO:0008076|voltage-gated potassium channel complex
PtpAffx.8027.1.A1_a_at	A	A1TS	POPTR_0009s12820	POPTR_0009s12820 (11)	scaffold_9:10389698-10389942(+) (11)	NA	NA	NA	AT2G21240.2	basic pentacysteine 4 	LOC_Os06g04010.2	"GAGA-binding protein, putative, expressed"	Medtr4g151960.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8027.2.A1_a_at	A	A2TS	POPTR_0004s17060	POPTR_0004s17060 (11)//POPTR_0009s12820 (11)	scaffold_4:17414903-17414940(+) (11)//scaffold_9:10389633-10389670(+) (11)	NA	NA	NA	AT2G21240.2	basic pentacysteine 4 	LOC_Os06g04010.2	"GAGA-binding protein, putative, expressed"	Medtr4g151960.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8027.2.A1_at	A	A1TS	POPTR_0004s17060	POPTR_0004s17060 (11)	scaffold_4:17414776-17415340(+) (11)	NA	NA	NA	AT2G21240.2	basic pentacysteine 4 	LOC_Os06g04010.2	"GAGA-binding protein, putative, expressed"	Medtr4g151960.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80284.1.S1_at	A	A1TS	POPTR_0002s23680	POPTR_0002s23680 (11)	scaffold_2:21228480-21229546(+) (11)	NA	P31828	Probable zinc protease pqqL	AT5G42390.1	Insulinase (Peptidase family M16) family protein 	LOC_Os06g41990.2	"M16 domain containing zinc peptidase, putative, expressed"	Medtr5g007490.1	"Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.80287.1.S1_at	A	A1TS	POPTR_0001s20900	POPTR_0001s20900 (11)	scaffold_1:19125993-19126437(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os03g52310.1	"transposon protein, putative, unclassified, expressed"	AC235022_16.1	"Zinc finger, BED-type predicted AC235022.1 101864-97385 E EGN_Mt090430 200"	GO:0030855|epithelial cell differentiation||GO:0030216|keratinocyte differentiation	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	GO:0001533|cornified envelope
PtpAffx.80303.1.S1_at	A	A1MS	POPTR_0003s12680	POPTR_0003s12680 (10)	scaffold_3:13198053-13198420(+) (10)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT1G63500.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80325.1.S1_s_at	A	A1TS	POPTR_0005s15710	POPTR_0005s15710 (11)	scaffold_5:12315147-12315574(-) (11)	NA	Q05047	Secologanin synthase	AT5G38450.1	"cytochrome P450, family 735, subfamily A, polypeptide 1 "	LOC_Os09g23820.1	"cytochrome P450 72A1, putative, expressed"	Medtr1g127040.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.8033.1.S1_s_at	A	A1TS	POPTR_0014s08590	POPTR_0014s08590 (11)	scaffold_14:6392170-6392621(+) (11)	NA	Q8RVQ5	Exocyst complex component 5	AT5G12370.2	exocyst complex component sec10 	LOC_Os12g13590.1	"exocyst complex component 5, putative, expressed"	Medtr8g026780.1	AMP-dependent synthetase and ligase; Exocyst complex component Sec10 	GO:0048278|vesicle docking||GO:0006887|exocytosis	NA	GO:0005737|cytoplasm
PtpAffx.8033.2.A1_at	A	A1TS	POPTR_0002s16570	POPTR_0002s16570 (11)	scaffold_2:12409566-12412471(+) (11)	NA	Q8RVQ5	Exocyst complex component 5	AT5G12370.3	exocyst complex component sec10 	LOC_Os12g13590.1	"exocyst complex component 5, putative, expressed"	Medtr8g026780.1	AMP-dependent synthetase and ligase; Exocyst complex component Sec10 	GO:0048278|vesicle docking||GO:0006887|exocytosis	NA	GO:0005737|cytoplasm
PtpAffx.8033.3.S1_a_at	A	A1TS	POPTR_0002s16570	POPTR_0002s16570 (11)	scaffold_2:12408655-12409656(+) (11)	NA	Q8RVQ5	Exocyst complex component 5	AT5G12370.3	exocyst complex component sec10 	LOC_Os12g13590.1	"exocyst complex component 5, putative, expressed"	Medtr8g026780.1	AMP-dependent synthetase and ligase; Exocyst complex component Sec10 	GO:0048278|vesicle docking||GO:0006887|exocytosis	NA	GO:0005737|cytoplasm
PtpAffx.80334.1.S1_at	A	A1TS	POPTR_0014s13520	POPTR_0014s13520 (11)	scaffold_14:9951656-9952122(+) (11)	NA	NA	NA	AT3G63095.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g24300.1	"LTPL1 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	AC233676_41.1	hypothetical protein AC233676.2 159341-159811 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80343.1.S1_at	A	A1TS	POPTR_0003s09040	POPTR_0003s09040 (11)	scaffold_3:10364669-10365407(+) (11)	NA	NA	NA	AT5G46795.1	microspore-specific  promoter 2 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80345.1.S1_at	A	A1TS	POPTR_0001s35390	POPTR_0001s35390 (9)	scaffold_1:33739386-33739780(+) (9)	NA	P15792	Protein kinase PVPK-1	AT3G27580.2	Protein kinase superfamily protein 	LOC_Os09g08420.1	"AGC_PVPK_like_kin82y.15 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.8035.1.A1_at	A	A1TS	POPTR_0018s01040	POPTR_0018s01040 (11)	scaffold_18:960697-960766(+) (11)	NA	NA	NA	AT2G25670.2	BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink). 	LOC_Os01g08410.1	"early fruit mRNA, putative, expressed"	Medtr3g136050.1	"M355, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80384.1.S1_at	A	A1TS	POPTR_0002s03880	POPTR_0002s03880 (9)	scaffold_2:2435938-2436362(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8040.2.A1_a_at	A	A1TS	POPTR_0015s13320	POPTR_0015s13320 (11)	scaffold_15:13321455-13323066(-) (11)	NA	Q6IUY1	Rhomboid-like protease 3	AT1G63120.1	RHOMBOID-like 2 	LOC_Os03g02530.1	"OsRhmbd7 - Putative Rhomboid homologue, expressed"	Medtr1g129260.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.8040.3.S1_a_at	A	A1TS	POPTR_0015s13320	POPTR_0015s13320 (11)	scaffold_15:13321477-13322327(-) (11)	NA	Q6IUY1	Rhomboid-like protease 3	AT1G63120.1	RHOMBOID-like 2 	LOC_Os03g02530.1	"OsRhmbd7 - Putative Rhomboid homologue, expressed"	Medtr1g129260.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.80440.1.A1_at	A	A1MS	POPTR_0015s06340	POPTR_0015s06340 (9)	scaffold_15:7003317-7003955(-) (9)	NA	Q9LS46	Aluminum-activated malate transporter 9	AT3G18440.1	aluminum-activated malate transporter 9 	LOC_Os02g49790.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8045.1.S1_s_at	A	A1TS	POPTR_0001s40310	POPTR_0001s40310 (10)	scaffold_1:39673939-39674083(-) (10)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT1G53300.1	tetratricopetide-repeat thioredoxin-like 1 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.8047.1.A1_at	A	A1TS	POPTR_0006s02200	POPTR_0006s02200 (11)	scaffold_6:1447593-1448049(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
PtpAffx.80487.1.A1_at	A	A1MA	POPTR_0014s06115	POPTR_0014s06115 (9)	NA	POPTR_0102s00240 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80503.1.A1_s_at	A	A1TS	POPTR_0010s15600	POPTR_0010s15600 (11)	scaffold_10:14755590-14755826(+) (11)	POPTR_0008s10470 (6)	P29130	Phytochrome B	AT2G18790.1	phytochrome B 	LOC_Os03g19590.1	"phytochrome B, putative, expressed"	Medtr2g038110.1	Bacteriophytochrome; ; ; 	"GO:0007165|signal transduction||GO:0023052|signaling||GO:0007600|sensory perception||GO:0018298|protein-chromophore linkage||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0008020|G-protein coupled photoreceptor activity||GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.80513.1.S1_at	A	A3TS	POPTR_0017s13240	POPTR_0017s13240 (11)//POPTR_0017s13150 (10)//POPTR_0017s13200 (10)	scaffold_17:13304877-13305398(+) (10)//scaffold_17:13363443-13374018(+) (10)//scaffold_17:13427123-13427685(+) (11)//scaffold_648:55-451(+) (9)	NA	Q9FID8	Putative receptor-like protein kinase At5g39000	AT5G39000.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g56330.1	"TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.80529.1.A1_s_at	A	A1TS	POPTR_0019s05010	POPTR_0019s05010 (11)	scaffold_19:5237555-5237906(+) (11)	NA	Q5RC72	Casein kinase I isoform delta	AT3G03940.1	Protein kinase family protein 	LOC_Os01g56580.2	"CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g100510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.80529.2.A1_at	A	A1TS	POPTR_0019s05010	POPTR_0019s05010 (11)	scaffold_19:5230898-5231209(+) (11)	NA	Q5RC72	Casein kinase I isoform delta	AT3G03940.1	Protein kinase family protein 	LOC_Os01g56580.2	"CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g100510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.80539.1.A1_at	A	A1TS	POPTR_0002s10520	POPTR_0002s10520 (9)	scaffold_2:7598864-7599250(-) (9)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT5G49700.1	Predicted AT-hook DNA-binding family protein 	LOC_Os09g28930.1	"DNA binding protein, putative"	Medtr3g149230.1	Predicted AT-hook DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80570.1.S1_a_at	A	A1TS	POPTR_0002s02670	POPTR_0002s02670 (11)	scaffold_2:1577507-1577759(-) (11)	NA	Q56XU4	Zinc finger CCCH domain-containing protein 6	AT1G19860.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os04g56750.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr1g024110.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.80578.1.A1_at	A	A1TS	POPTR_0005s22860	POPTR_0005s22860 (10)	scaffold_5:21746902-21747833(+) (10)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT1G06690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os07g05000.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.80599.1.A1_at	A	A1TS	POPTR_0006s20720	POPTR_0006s20720 (9)	scaffold_6:19708788-19710445(+) (9)	NA	P93740	"Nudix hydrolase 23, chloroplastic"	AT2G42070.1	nudix hydrolase homolog 23 	LOC_Os09g38040.1	"hydrolase, NUDIX family protein, expressed"	Medtr7g111980.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.80624.1.A1_at	A	A1TS	POPTR_0003s19760	POPTR_0003s19760 (11)	scaffold_3:18412902-18413324(+) (11)	NA	Q8GWZ6	Protein SENSITIVITY TO RED LIGHT REDUCED 1	AT5G59560.2	sensitivity to red light reduced protein (SRR1) 	LOC_Os05g02690.1	"sensitivity to red light reduced protein 1, putative, expressed"	Medtr3g020100.1	SRR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8063.1.S1_a_at	A	A2TS	POPTR_0012s01680	POPTR_0012s01680 (11)//POPTR_0015s02100 (11)	scaffold_12:1262732-1263969(-) (11)//scaffold_15:1443816-1445029(+) (11)	NA	Q94AT1	Probable protein phosphatase 2C 76	AT5G53140.1	Protein phosphatase 2C family protein 	LOC_Os05g50970.1	"protein phosphatase 2C, putative, expressed"	Medtr3g124450.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8063.1.S1_at	A	A1TS	POPTR_0015s02100	POPTR_0015s02100 (11)	scaffold_15:1445025-1445370(+) (11)	NA	Q94AT1	Probable protein phosphatase 2C 76	AT5G53140.1	Protein phosphatase 2C family protein 	LOC_Os05g50970.1	"protein phosphatase 2C, putative, expressed"	Medtr3g124450.2	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8063.2.A1_at	A	A1TS	POPTR_0012s01680	POPTR_0012s01680 (11)	scaffold_12:1262390-1263918(-) (11)	NA	Q94AT1	Probable protein phosphatase 2C 76	AT5G53140.1	Protein phosphatase 2C family protein 	LOC_Os05g50970.1	"protein phosphatase 2C, putative, expressed"	Medtr3g124450.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80681.1.A1_at	A	A1TS	POPTR_0018s06220	POPTR_0018s06220 (9)	scaffold_18:5948148-5948400(+) (9)//scaffold_18:12977795-12978047(+) (9)	NA	NA	NA	AT4G13400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g48230.1	expressed protein	Medtr1g083900.1	hypothetical protein 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.80734.1.A1_at	A	A1TS	POPTR_0002s17000	POPTR_0002s17000 (11)	scaffold_2:12762645-12763153(+) (11)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80749.1.S1_at	A	A1TS	POPTR_0004s10680	POPTR_0004s10680 (10)	scaffold_4:9202076-9202766(+) (10)	NA	NA	NA	AT5G08120.1	movement protein binding protein 2C 	LOC_Os06g17440.1	"microtubule-associated protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8075.1.S1_s_at	A	A1TS	POPTR_0005s25520	POPTR_0005s25520 (9)	scaffold_5:23762539-23762918(-) (9)	NA	O94424	Transcription initiation factor IIF subunit beta	AT1G75510.1	"Transcription initiation factor IIF, beta subunit "	LOC_Os01g56550.2	"transcription initiation factor IIF beta subunit, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006367|transcription initiation from RNA polymerase II promoter	GO:0005524|ATP binding||GO:0003702|RNA polymerase II transcription factor activity	GO:0005674|transcription factor TFIIF complex
PtpAffx.8075.3.A1_at	A	A1TS	POPTR_0002s03040	POPTR_0002s03040 (11)	scaffold_2:1892084-1892264(+) (11)	NA	O94424	Transcription initiation factor IIF subunit beta	AT1G75510.1	"Transcription initiation factor IIF, beta subunit "	LOC_Os01g56550.2	"transcription initiation factor IIF beta subunit, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006367|transcription initiation from RNA polymerase II promoter	GO:0005524|ATP binding||GO:0003702|RNA polymerase II transcription factor activity	GO:0005674|transcription factor TFIIF complex
PtpAffx.8075.4.S1_at	A	A1TS	POPTR_0002s03040	POPTR_0002s03040 (9)	scaffold_2:1891777-1891992(+) (9)	NA	O94424	Transcription initiation factor IIF subunit beta	AT1G75510.1	"Transcription initiation factor IIF, beta subunit "	LOC_Os01g56550.2	"transcription initiation factor IIF beta subunit, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006367|transcription initiation from RNA polymerase II promoter	GO:0005524|ATP binding||GO:0003702|RNA polymerase II transcription factor activity	GO:0005674|transcription factor TFIIF complex
PtpAffx.8077.1.A1_at	A	A1MS	POPTR_0002s01010	POPTR_0002s01010 (9)	scaffold_2:501100-501303(+) (9)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT1G20670.1	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr5g100440.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80799.1.A1_at	A	A1TS	POPTR_0014s06500	POPTR_0014s06500 (11)	scaffold_14:4934823-4939454(+) (11)	NA	Q9Y4P3	Transducin beta-like protein 2	AT4G00090.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g64110.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80799.2.S1_at	A	A1TS	POPTR_0002s14900	POPTR_0002s14900 (11)	scaffold_2:11025199-11026045(+) (11)	NA	Q9Y4P3	Transducin beta-like protein 2	AT4G00090.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g64110.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80799.3.A1_a_at	A	A2TS	POPTR_0002s14900	POPTR_0002s14900 (11)//POPTR_0014s06500 (10)	scaffold_14:4938312-4939269(+) (10)//scaffold_2:11029046-11029967(+) (11)	NA	Q9Y4P3	Transducin beta-like protein 2	AT4G00090.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g64110.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80799.4.A1_at	A	A1TS	POPTR_0002s14900	POPTR_0002s14900 (10)	scaffold_2:11029142-11030152(+) (10)	NA	Q9Y4P3	Transducin beta-like protein 2	AT4G00090.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g64110.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80804.1.S1_s_at	A	A1TS	POPTR_0004s07350	POPTR_0004s07350 (11)	scaffold_4:6066493-6069054(+) (11)	NA	Q42521	Glutamate decarboxylase 1	AT5G17330.1	glutamate decarboxylase 	LOC_Os03g51080.1	"glutamate decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.80812.1.S1_s_at	A	A1TS	POPTR_0016s14240	POPTR_0016s14240 (11)	scaffold_16:13493825-13494226(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G01850.1	Protein kinase superfamily protein 	LOC_Os03g60150.1	"protein kinase domain containing protein, expressed"	Medtr7g080080.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.80837.1.S1_at	A	A1TS	POPTR_0016s13160	POPTR_0016s13160 (11)	scaffold_16:12415690-12416091(-) (11)	NA	O13864	Importin subunit beta-1	AT3G08947.1	ARM repeat superfamily protein 	LOC_Os05g28510.4	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.80839.1.S1_at	A	A1TS	POPTR_0005s25650	POPTR_0005s25650 (9)	scaffold_5:23869568-23869881(-) (10)	NA	Q8VD66	Abhydrolase domain-containing protein 4	AT4G24160.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g34860.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g153980.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80849.1.S1_at	A	A1TS	POPTR_0019s04140	POPTR_0019s04140 (10)	scaffold_19:4242623-4243430(+) (10)	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g022900.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.80851.1.S1_at	A	A1TS	POPTR_0010s26140	POPTR_0010s26140 (9)	scaffold_10:21476863-21478191(+) (9)	NA	NA	NA	AT5G08540.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g44560.1	expressed protein	Medtr1g047120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80854.1.S1_s_at	A	A1TS	POPTR_0014s15960	POPTR_0014s15960 (11)	scaffold_14:12026795-12029416(+) (11)	NA	Q07511	"Formate dehydrogenase, mitochondrial"	AT5G14780.1	formate dehydrogenase 	LOC_Os06g29180.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.80885.1.S1_at	A	A1TS	POPTR_0011s15590	POPTR_0011s15590 (11)	scaffold_11:17671915-17672482(+) (11)	NA	NA	NA	AT1G32790.1	CTC-interacting domain 11 	LOC_Os08g02330.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122880.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.80897.1.S1_at	A	A1TS	POPTR_0011s10450	POPTR_0011s10450 (10)	scaffold_11:12889019-12891184(-) (10)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT1G78560.1	Sodium Bile acid symporter family 	LOC_Os04g31210.4	"bile acid sodium symporter family protein, putative, expressed"	Medtr8g118790.2	Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.8090.1.S1_at	A	A1TS	POPTR_0007s12240	POPTR_0007s12240 (11)	scaffold_7:12560023-12560478(-) (11)	NA	NA	NA	AT4G37220.1	Cold acclimation protein WCOR413 family 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	Medtr4g093030.1	Cold acclimation WCOR413 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8091.2.S1_at	A	A1TS	POPTR_0017s01670	POPTR_0017s01670 (11)	scaffold_17:1202620-1202740(+) (11)//scaffold_96:20392-20512(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8091.2.S1_s_at	A	A1TS	POPTR_0017s01670	POPTR_0017s01670 (11)	scaffold_17:1202412-1202557(+) (11)//scaffold_96:20575-20720(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80921.2.A1_a_at	A	A1TS	POPTR_0014s04170	POPTR_0014s04170 (10)	scaffold_14:3299281-3301394(+) (10)	NA	Q8NF37	Lysophosphatidylcholine acyltransferase 1	AT1G80950.1	Phospholipid/glycerol acyltransferase family protein 	LOC_Os05g28960.1	"acyltransferase, putative, expressed"	Medtr7g127360.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.80924.1.S1_a_at	A	A1TS	POPTR_0007s01790	POPTR_0007s01790 (11)	scaffold_7:1036209-1037592(+) (11)	NA	NA	NA	AT1G06050.1	Protein of unknown function (DUF1336) 	LOC_Os08g05640.3	"DUF1336 domain containing protein, expressed"	Medtr3g138580.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8093.1.S1_at	A	A1TS	POPTR_0012s08990	POPTR_0012s08990 (10)	scaffold_12:10072874-10073406(+) (10)	POPTR_0015s09240 (6)	C0LGR3	Probable LRR receptor-like serine/threonine-protein kinase At4g26540	AT5G56040.2	Leucine-rich receptor-like protein kinase family protein 	LOC_Os01g07560.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g080170.1	"Protein kinase; Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.80953.1.A1_at	A	A1TS	POPTR_0005s06730	POPTR_0005s06730 (11)	scaffold_5:4514956-4515462(-) (11)	NA	Q55EX9	Putative methyltransferase DDB_G0268948	AT5G10830.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g40660.1	"methyltransferase, putative, expressed"	Medtr7g107220.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.80954.1.S1_at	A	A1TS	POPTR_0003s16360	POPTR_0003s16360 (9)	scaffold_3:15943713-15944198(-) (9)	NA	Q5UNY4	Uncharacterized protein L728	AT5G13210.1	"Uncharacterised conserved protein UCP015417,  vWA "	LOC_Os09g32370.1	"gp176, putative, expressed"	Medtr5g047770.1	Protein of unknown function T31B5_30_vWA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80955.1.S1_at	A	A1TS	POPTR_0005s04030	POPTR_0005s04030 (11)	scaffold_5:2682047-2684579(+) (11)	NA	NA	NA	AT1G05070.1	Protein of unknown function (DUF1068) 	LOC_Os04g42340.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80967.1.S1_at	A	A1TS	POPTR_0012s11030	POPTR_0012s11030 (10)	scaffold_12:11647021-11647488(+) (10)	NA	Q9FH54	Ethylene-responsive transcription factor ERF114	AT5G61890.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g151340.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.80972.1.S1_at	A	A1TS	POPTR_0019s06340	POPTR_0019s06340 (10)	scaffold_19:7071470-7072830(+) (10)	NA	NA	NA	AT1G03250.1	unknown protein; Has 89 Blast hits to 89 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os12g05000.1	expressed protein	Medtr1g086640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.810.1.S1_at	A	A1TS	POPTR_0005s27110	POPTR_0005s27110 (11)	scaffold_5:24904971-24905460(-) (11)	NA	NA	NA	AT1G42430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). 	LOC_Os03g04100.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81017.1.S1_at	A	A1TS	POPTR_0014s05480	POPTR_0014s05480 (11)	scaffold_14:4099156-4099309(-) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81040.1.A1_s_at	A	A1TS	POPTR_0002s08170	POPTR_0002s08170 (11)	scaffold_2:5653551-5654408(-) (11)	NA	Q9D0F6	Replication factor C subunit 5	AT1G77470.1	replication factor C subunit 3 	LOC_Os02g53500.2	"RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed"	Medtr3g100750.1	"AAA ATPase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
PtpAffx.81047.1.A1_at	A	A1TS	POPTR_0007s13390	POPTR_0007s13390 (11)	scaffold_337:14158-15024(-) (11)//scaffold_7:13502445-13503311(+) (11)	NA	NA	NA	AT3G26750.1	CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g03820.1	expressed protein	Medtr8g092790.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.811.1.S1_s_at	A	A4TS	POPTR_0001s35850	POPTR_0001s35870 (11)//POPTR_0001s35880 (11)//POPTR_0001s35850 (11)//POPTR_0001s35860 (10)	scaffold_1:34208495-34208701(+) (11)//scaffold_1:34219454-34219660(+) (10)//scaffold_1:34239845-34240051(+) (11)//scaffold_1:34311721-34311927(-) (11)	POPTR_0001s35900 (8)	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.811.1.S1_x_at	A	A4TS	POPTR_0001s35850	POPTR_0001s35870 (11)//POPTR_0001s35880 (11)//POPTR_0001s35850 (11)//POPTR_0001s35900 (11)	scaffold_1:34208556-34208796(+) (11)//scaffold_1:34239906-34240145(+) (11)//scaffold_1:34311627-34311866(-) (11)//scaffold_1:34340076-34340318(-) (11)	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.811.3.A1_at	A	A1TS	POPTR_0003s08340	POPTR_0003s08340 (10)	scaffold_3:9732060-9732097(+) (10)	NA	Q9LTC0	Probable receptor-like protein kinase At5g47070	AT5G47070.1	Protein kinase superfamily protein 	LOC_Os02g43430.1	"protein kinase domain containing protein, expressed"	Medtr5g013780.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.8111.1.S1_s_at	A	A1TS	POPTR_0004s24150	POPTR_0004s24150 (11)	scaffold_4:22885858-22887441(-) (11)	NA	Q8TCT0	Ceramide kinase	AT5G51290.1	Diacylglycerol kinase family protein 	LOC_Os02g43906.1	"ceramide kinase-related, putative, expressed"	Medtr3g009620.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.81112.1.S1_at	A	A1TS	POPTR_0014s13950	POPTR_0014s13950 (10)	scaffold_14:10218620-10219108(+) (10)	NA	NA	NA	AT2G30990.2	Protein of unknown function (DUF688) 	LOC_Os01g55410.1	expressed protein	Medtr4g109840.1	Protein of unknown function DUF688 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81117.1.S1_a_at	A	A1TS	POPTR_0001s07940	POPTR_0001s07940 (11)	scaffold_1:6018376-6018463(-) (11)	NA	Q4P7A4	"Putative transferase CAF17, mitochondrial"	AT4G12130.1	Glycine cleavage T-protein family 	LOC_Os06g04380.1	"aminomethyltransferase, putative, expressed"	NA	NA	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
PtpAffx.81117.2.S1_at	A	A1TS	POPTR_0001s07940	POPTR_0001s07940 (11)	scaffold_1:6018297-6018827(-) (11)	NA	Q4P7A4	"Putative transferase CAF17, mitochondrial"	AT4G12130.1	Glycine cleavage T-protein family 	LOC_Os06g04380.1	"aminomethyltransferase, putative, expressed"	NA	NA	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
PtpAffx.8114.1.S1_at	A	A1TS	POPTR_0006s20030	POPTR_0006s20030 (11)	scaffold_6:19070741-19071236(+) (11)	NA	O65554	CBL-interacting serine/threonine-protein kinase 6	AT4G30960.1	SOS3-interacting protein 3 	LOC_Os01g10890.1	"CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g145620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.81157.1.S1_at	A	A1TS	POPTR_0011s04150	POPTR_0011s04150 (11)	scaffold_11:4199295-4199537(+) (11)	NA	Q8VYN2	Vesicle-associated protein 4-2	AT4G21450.1	PapD-like superfamily protein 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.812.1.A1_at	A	A1TS	POPTR_0015s04200	POPTR_0015s04200 (9)	scaffold_15:4241090-4241871(+) (9)	NA	P32110	Probable glutathione S-transferase	AT2G29460.1	glutathione S-transferase tau 4 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr4g135740.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81201.1.S1_a_at	A	A1TS	POPTR_0006s13550	POPTR_0006s13550 (11)	scaffold_6:10775015-10777149(+) (11)	NA	Q9ZUU0	WRKY transcription factor 44	AT2G37260.1	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g120710.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.81202.1.S1_s_at	A	A1TS	POPTR_0002s13870	POPTR_0002s13870 (11)	scaffold_2:10283302-10285111(+) (11)	NA	Q3KR56	GRAM domain-containing protein 1A	AT1G02120.1	GRAM domain family protein 	LOC_Os09g34130.1	"GRAM domain containing protein, expressed"	Medtr4g128530.1	C2; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81210.1.S1_at	A	A1TS	POPTR_0006s29010	POPTR_0006s29010 (11)	scaffold_6:26510347-26511507(-) (11)	NA	NA	NA	AT4G31430.3	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g56140.3	expressed protein	Medtr3g133430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81247.1.S1_s_at	A	A1TS	POPTR_0008s08380	POPTR_0008s08380 (10)	scaffold_8:5200339-5200812(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81253.1.S1_at	A	A1TS	POPTR_0005s00460	POPTR_0005s00460 (11)	scaffold_5:161653-162770(-) (11)	NA	P42211	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g04630.6	"retrotransposon protein, putative, SINE subclass, expressed"	Medtr7g134920.2	"Peptidase A1, pepsin "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
PtpAffx.81285.1.S1_a_at	A	A1TS	POPTR_0009s08510	POPTR_0009s08510 (11)	scaffold_9:7773482-7773940(+) (11)	NA	NA	NA	AT5G64510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g56180.1	expressed protein	Medtr2g010500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81285.2.S1_at	A	A1TS	POPTR_0009s08510	POPTR_0009s08510 (10)	scaffold_9:7773849-7774470(+) (10)	NA	NA	NA	AT5G64510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g56180.1	expressed protein	Medtr2g010500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81296.1.S1_at	A	A1TS	POPTR_0010s21950	POPTR_0010s21950 (9)	scaffold_10:19063505-19063772(+) (9)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G12360.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81303.1.S1_at	A	A1MS	POPTR_0007s13930	POPTR_0007s13930 (11)	scaffold_7:13924380-13924494(-) (11)	NA	P40267	Histone H1	AT2G18050.1	histone H1-3 	LOC_Os06g04020.1	"histone H1, putative, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.8131.4.A1_a_at	A	A1TS	POPTR_0006s23840	POPTR_0006s23840 (11)	scaffold_6:22576657-22576774(+) (11)	NA	P10290	Anthocyanin regulatory C1 protein	AT4G38620.1	myb domain protein 4 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8131.6.A1_a_at	A	A1TS	POPTR_0006s23840	POPTR_0006s23840 (11)	scaffold_6:22576935-22577109(+) (11)	NA	P10290	Anthocyanin regulatory C1 protein	AT4G38620.1	myb domain protein 4 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81315.1.S1_s_at	A	A1TS	POPTR_0002s07260	POPTR_0002s07260 (11)	scaffold_2:4964335-4965414(+) (11)	NA	Q9FH05	Serine carboxypeptidase-like 42	AT5G42240.1	serine carboxypeptidase-like 42 	LOC_Os11g10750.1	"OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr5g080870.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.8133.2.A1_at	A	A1TS	POPTR_0001s01100	POPTR_0001s01100 (11)	scaffold_1:866216-868772(+) (11)	NA	NA	NA	AT4G34660.1	SH3 domain-containing protein 	LOC_Os03g16000.1	"src homology-3 domain protein 3, putative, expressed"	Medtr5g026540.1	SH3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81348.1.S1_s_at	A	A2TS	POPTR_0004s11220	POPTR_0017s13570 (11)//POPTR_0004s11220 (11)	scaffold_17:13691077-13691703(+) (11)//scaffold_4:9843175-9843811(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81373.1.S1_at	A	A1TS	POPTR_0010s21530	POPTR_0010s21530 (10)	scaffold_10:18780397-18780569(+) (10)	NA	NA	NA	AT2G39580.1	CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os12g37890.1	expressed protein	Medtr7g025350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81387.1.S1_at	A	A1TS	POPTR_0005s09710	POPTR_0005s09710 (10)	scaffold_5:6807826-6808666(-) (11)	NA	P36428	Alanyl-tRNA synthetase	AT1G50200.1	Alanyl-tRNA synthetase 	LOC_Os10g10244.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr4g101440.1	"Alanyl-tRNA synthetase, class IIc "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006419|alanyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004813|alanine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.81408.1.S1_s_at	A	A1TS	POPTR_0011s14620	POPTR_0011s14620 (11)	scaffold_11:16964143-16964531(-) (11)	NA	NA	NA	AT3G12940.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os07g31440.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81420.1.S1_at	A	A1TS	POPTR_0006s23040	POPTR_0006s23040 (11)	scaffold_6:21879603-21880722(-) (11)	NA	NA	NA	AT2G37390.1	Chloroplast-targeted copper chaperone protein 	LOC_Os03g60480.1	"heavy metal-associated domain containing protein, expressed"	Medtr7g120660.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.81427.1.S1_at	A	A1TS	POPTR_0004s15980	POPTR_0004s15980 (11)	scaffold_4:16452434-16453919(-) (11)	NA	Q9SXA1	Phosphatidylinositol 4-kinase alpha	AT1G49340.1	Phosphatidylinositol 3- and 4-kinase family protein 	LOC_Os03g50320.1	"phosphatidylinositol 4-kinase PI4K, putative, expressed"	Medtr3g159720.1	Ribosomal protein L2; Protein kinase-like; ; 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0004428|inositol or phosphatidylinositol kinase activity"	NA
PtpAffx.81427.1.S1_s_at	A	A2TS	POPTR_0004s15980	POPTR_0009s11660 (11)//POPTR_0004s15980 (11)	scaffold_4:16452490-16456307(-) (11)//scaffold_9:9649402-9652549(-) (11)	NA	Q9SXA1	Phosphatidylinositol 4-kinase alpha	AT1G49340.1	Phosphatidylinositol 3- and 4-kinase family protein 	LOC_Os03g50320.1	"phosphatidylinositol 4-kinase PI4K, putative, expressed"	Medtr3g159720.1	Ribosomal protein L2; Protein kinase-like; ; 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0004428|inositol or phosphatidylinositol kinase activity"	NA
PtpAffx.8143.1.S1_s_at	A	A1TS	POPTR_0006s18280	POPTR_0006s18280 (11)	scaffold_6:16587595-16588475(-) (11)	NA	Q05001	NADPH--cytochrome P450 reductase	AT4G30210.2	P450 reductase 2 	LOC_Os09g38620.1	"NADPH reductase, putative, expressed"	Medtr8g129070.1	"Flavodoxin/nitric oxide synthase; Sulphite reductase [NADPH] flavoprotein, alpha chain "	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.81460.1.S1_at	A	A1TS	POPTR_0006s19380	POPTR_0006s19380 (11)	scaffold_6:18428748-18429228(-) (11)	NA	O15818	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81470.1.S1_at	A	A1TS	POPTR_0018s13650	POPTR_0018s13650 (11)	scaffold_18:13909138-13909568(-) (11)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.81470.1.S1_s_at	A	A1TS	POPTR_0018s13650	POPTR_0018s13650 (11)	scaffold_18:13909098-13909438(-) (11)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.81472.1.S1_at	A	A1TS	POPTR_0016s07890	POPTR_0016s07890 (11)	scaffold_16:5716383-5718888(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.81485.1.S1_at	A	A1TS	POPTR_0015s12920	POPTR_0015s12920 (11)	scaffold_15:13090008-13090285(+) (11)	NA	Q5XVA8	Uncharacterized protein At3g49055	AT3G49055.1	unknown protein; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24560.1); Has 52205 Blast hits to 29376 proteins in 1994 species: Archae - 873; Bacteria - 6150; Metazoa - 27099; Fungi - 3784; Plants - 3062; Viruses - 130; Other Eukaryotes - 11107 (source: NCBI BLink). 	LOC_Os08g44550.1	expressed protein	Medtr1g126850.1	"Uncharacterized protein At3g49055, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81488.1.S1_at	A	A1TS	POPTR_0005s14820	POPTR_0005s14820 (11)	scaffold_5:11749944-11751579(-) (11)	NA	A4QP78	UPF0760 protein C2orf29 homolog	AT5G18420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g13694.1	"AGAP007117-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81489.1.S1_at	A	A1TS	POPTR_0010s10050	POPTR_0010s10050 (11)	scaffold_10:10648689-10652824(-) (11)	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.8149.1.S1_at	A	A1MS	POPTR_0014s07930	POPTR_0014s07930 (10)	scaffold_14:5888532-5888887(+) (10)	NA	NA	NA	AT3G49050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.81515.1.S1_at	A	A1TS	POPTR_0006s08810	POPTR_0006s08810 (11)	scaffold_6:6487222-6487787(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT5G59550.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8152.1.S1_at	A	A1TS	POPTR_0009s05920	POPTR_0009s05920 (10)	scaffold_9:5870877-5872357(-) (10)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT5G19350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g07800.1	"RNA recognition motif containing protein, putative, expressed"	Medtr2g117480.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.8152.2.A1_at	A	A1TS	POPTR_0009s05920	POPTR_0009s05920 (11)	scaffold_9:5868794-5869147(-) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT5G19350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g07800.1	"RNA recognition motif containing protein, putative, expressed"	Medtr2g117480.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.81522.1.S1_at	A	A1TS	POPTR_0011s04390	POPTR_0011s04390 (11)	scaffold_11:4382102-4383682(-) (11)	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.81537.1.S1_at	A	A1TS	POPTR_0017s13340	POPTR_0017s13340 (11)	scaffold_17:13521571-13522933(+) (11)	NA	Q69F95	Cytochrome P450 85A	AT3G30180.1	brassinosteroid-6-oxidase 2 	LOC_Os03g40540.1	"cytochrome P450, putative, expressed"	Medtr3g008560.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.81542.1.S1_at	A	A1TS	POPTR_0006s20390	POPTR_0006s20390 (11)	scaffold_6:19434923-19435404(+) (11)	NA	NA	NA	AT2G46490.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81589.1.A1_s_at	A	A2TS	POPTR_0003s18770	POPTR_0003s18770 (11)//POPTR_0003s18820 (11)	scaffold_3:17722403-17722638(+) (11)//scaffold_3:17747507-17747742(-) (11)	NA	P52835	Flavonol 3-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os04g44460.1	"sulfotransferase domain containing protein, expressed"	Medtr8g077540.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.81642.1.A1_s_at	A	A1TS	POPTR_0016s03220	POPTR_0016s03220 (11)	scaffold_16:1639150-1639187(-) (11)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.81647.1.A1_at	A	A1TS	POPTR_0016s01150	POPTR_0016s01150 (11)	scaffold_16:474818-475685(+) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g105300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.81665.1.A1_at	A	A1MS	POPTR_0001s17000	POPTR_0001s17000 (11)	scaffold_1:13810841-13811018(-) (11)	NA	Q8VE65	Transcription initiation factor TFIID subunit 12	AT1G17440.2	Transcription initiation factor TFIID subunit A 	LOC_Os01g62820.3	"Transcription initiation factor TFIID subunit A containing protein, expressed"	Medtr8g024640.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006352|transcription initiation||GO:0006461|protein complex assembly	GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
PtpAffx.81667.1.A1_at	A	A1TS	POPTR_0019s14680	POPTR_0019s14680 (11)	scaffold_19:15371266-15371560(-) (11)	NA	Q6A009	RING finger protein 160	AT5G58410.1	HEAT/U-box domain-containing protein 	LOC_Os01g74610.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g082490.1	"Zinc finger, RING-type; Calcium-binding EF-hand; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.817.2.S1_at	A	A1TS	POPTR_0001s11040	POPTR_0001s11040 (9)	scaffold_1:8557871-8558355(+) (9)	NA	NA	NA	AT4G10810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8171.2.A1_a_at	A	A1TS	POPTR_0007s13480	POPTR_0007s13480 (11)	scaffold_7:13546076-13548471(-) (11)	NA	Q9FWT2	Probable ubiquitin-conjugating enzyme E2 16	AT1G75440.1	ubiquitin-conjugating enzyme 16 	LOC_Os03g47770.1	"ubiquitin-conjugating enzyme E2 W, putative, expressed"	Medtr5g021210.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.81711.1.A1_at	A	A1TS	POPTR_0001s14490	POPTR_0001s14490 (9)	scaffold_1:11369959-11371855(-) (9)	NA	NA	NA	AT4G13670.1	plastid transcriptionally active 5 	LOC_Os04g43420.1	"PTAC5, putative, expressed"	Medtr1g086920.1	Peptidoglycan-binding domain 1 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.81718.1.A1_at	A	A1TS	POPTR_0014s08990	POPTR_0014s08990 (9)	scaffold_14:6648137-6648690(+) (9)	NA	Q99089	Common plant regulatory factor 1	AT2G46270.1	G-box binding factor 3 	LOC_Os05g49420.1	"transcription factor, putative, expressed"	Medtr7g143570.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.8177.1.S1_at	A	A1TS	POPTR_0002s15880	POPTR_0002s15880 (11)	scaffold_2:11832353-11834156(-) (11)	NA	NA	NA	AT1G01770.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). 	LOC_Os07g27350.1	"atuA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81779.1.A1_at	A	A1TS	POPTR_0012s12150	POPTR_0012s12150 (9)	scaffold_12:12423498-12423549(+) (9)//scaffold_12:12435672-12435723(+) (9)//scaffold_12:14855263-14860731(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8179.1.S1_at	A	A1TS	POPTR_0009s14630	POPTR_0009s14630 (11)	scaffold_9:11429551-11429944(-) (11)	NA	Q9ZNU9	Zinc finger A20 and AN1 domain-containing stress-associated protein 3	AT2G27580.2	A20/AN1-like zinc finger family protein 	LOC_Os02g10200.2	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g069850.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.81805.1.S1_at	A	A3TS	POPTR_0001s26700	POPTR_0001s26780 (9)//POPTR_0001s26700 (9)//POPTR_0001s26730 (9)	scaffold_1:25713418-25714268(+) (9)//scaffold_1:25761406-25762256(+) (9)//scaffold_1:25794701-25795544(+) (9)	NA	B6QFH5	Structure-specific endonuclease subunit slx1	AT5G43210.1	"Excinuclease ABC, C subunit, N-terminal "	LOC_Os12g04934.1	"GIY-YIG catalytic domain containing protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004518|nuclease activity	GO:0005622|intracellular
PtpAffx.81806.1.A1_at	A	A1TS	POPTR_0012s10510	POPTR_0012s10510 (10)	scaffold_12:11270792-11270831(+) (10)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os01g70100.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.81816.1.S1_at	A	A1TS	POPTR_0015s12000	POPTR_0015s12000 (11)	scaffold_15:12448339-12449020(+) (11)	NA	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129920.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81826.1.A1_s_at	A	A1TS	POPTR_0019s10640	POPTR_0019s10640 (11)	scaffold_19:12165760-12165984(-) (11)	NA	Q641I1	Protein FAM135B	AT1G58350.2	Putative serine esterase  family protein 	LOC_Os12g06800.1	"serine esterase family protein, putative, expressed"	Medtr3g127940.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81831.1.S1_at	A	A1TS	POPTR_0013s14880	POPTR_0013s14880 (11)	scaffold_13:14972363-14972872(+) (11)	NA	Q8R331	Zinc finger HIT domain-containing protein 1	AT5G37055.1	HIT-type Zinc finger family protein 	LOC_Os03g25260.1	"HIT zinc finger domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8185.1.S1_at	A	A1TS	POPTR_0012s03560	POPTR_0012s03560 (9)	scaffold_12:2804662-2806548(+) (9)	NA	NA	NA	AT4G17010.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g35220.1	expressed protein	Medtr3g102400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81851.1.A1_at	A	A1TS	POPTR_0015s14720	POPTR_0015s14720 (9)	scaffold_15:14213935-14214458(-) (11)	NA	O49296	Endoglucanase 4	AT1G23210.1	glycosyl hydrolase 9B6 	LOC_Os09g36060.1	"endoglucanase, putative, expressed"	Medtr4g157670.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.81852.1.A1_at	A	A1TS	POPTR_0017s06130	POPTR_0017s06130 (9)	scaffold_17:4762760-4762999(+) (9)	NA	NA	NA	AT1G05870.4	Protein of unknown function (DUF1685) 	LOC_Os11g17930.1	expressed protein	Medtr1g146930.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8187.1.A1_at	A	A1TS	POPTR_0003s16600	POPTR_0003s16600 (11)	scaffold_3:16173722-16174859(-) (11)	NA	NA	NA	AT2G35450.1	catalytics;hydrolases 	LOC_Os04g32150.1	"amidohydrolase family protein, expressed"	Medtr7g022470.1	Amidohydrolase 2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.81880.1.S1_s_at	A	A1TS	POPTR_0005s05630	POPTR_0005s05630 (11)	scaffold_5:3709906-3710265(-) (11)	NA	NA	NA	AT1G72030.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os07g16130.1	"acetyltransferase, GNAT family, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.81893.1.A1_at	A	A1TS	POPTR_0005s24460	POPTR_0005s24460 (9)	scaffold_5:22998196-22998577(+) (9)	NA	Q8LDC8	Ethylene-responsive transcription factor 1B	AT3G23240.1	ethylene response factor 1 	LOC_Os03g64260.1	"AP2 domain containing protein, expressed"	Medtr1g042600.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.819.1.A1_at	A	A1TS	POPTR_0015s04440	POPTR_0015s04440 (11)	scaffold_15:4582107-4583480(-) (11)	NA	B0F9L7	Golgin candidate 2	AT1G18190.1	golgin candidate 2 	LOC_Os04g55810.1	expressed protein	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81900.1.S1_at	A	A1MS	POPTR_0008s05340	POPTR_0008s05340 (10)	scaffold_8:3102230-3104265(+) (10)	NA	NA	NA	AT3G12587.1	Oligosaccaryltransferase 	NA	NA	Medtr7g118190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81901.1.A1_at	A	A1TS	POPTR_0006s04720	POPTR_0006s04720 (11)	scaffold_6:3251437-3252252(-) (11)	NA	O81635	Kinesin-4	AT3G10310.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os06g36080.1	"kinesin motor domain containing protein, expressed"	Medtr7g108520.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.81905.1.S1_at	A	A1TS	POPTR_0010s22440	POPTR_0010s22440 (11)	scaffold_10:19359685-19360921(+) (11)	NA	Q54TH4	Golgi to ER traffic protein 4 homolog	AT5G63220.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). 	LOC_Os01g07100.1	expressed protein	Medtr1g121920.1	Protein of unknown function DUF410 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81905.2.S1_a_at	A	A1TS	POPTR_0010s22440	POPTR_0010s22440 (11)	scaffold_10:19357783-19359026(+) (11)	NA	Q54TH4	Golgi to ER traffic protein 4 homolog	AT5G63220.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). 	LOC_Os01g07100.1	expressed protein	Medtr1g121920.1	Protein of unknown function DUF410 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81915.1.A1_at	A	A1TS	POPTR_0011s09030	POPTR_0011s09030 (11)	scaffold_11:11100849-11101324(+) (11)	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.81944.1.A1_at	A	A1TS	POPTR_0001s34130	POPTR_0001s34130 (11)	scaffold_1:32269700-32271267(-) (11)	NA	A4IMC6	Ribosome-recycling factor	AT3G01800.1	Ribosome recycling factor 	LOC_Os04g41300.1	"ribosome recycling factor, putative, expressed"	Medtr8g043560.1	Ribosome recycling factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	NA	NA
PtpAffx.81954.1.S1_at	A	A1TS	POPTR_0013s04580	POPTR_0013s04580 (10)	scaffold_13:3144627-3144892(+) (10)	NA	NA	NA	AT3G04350.1	Plant protein of unknown function (DUF946) 	LOC_Os03g04930.1	expressed protein	Medtr1g093840.1	"Protein of unknown function DUF946, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81965.1.A1_at	A	A1TS	POPTR_0013s08120	POPTR_0013s08120 (11)	scaffold_13:7103974-7104272(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81989.1.A1_at	A	A1TS	POPTR_0002s13660	POPTR_0002s13660 (11)	scaffold_2:10137360-10139080(+) (11)	NA	P53665	"Acyl carrier protein, mitochondrial"	AT2G44620.1	mitochondrial acyl carrier protein 1 	LOC_Os07g12150.1	"acyl carrier protein, putative, expressed"	Medtr7g092290.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
PtpAffx.81990.1.A1_s_at	A	A1TS	POPTR_0006s21090	POPTR_0006s21090 (11)	scaffold_6:20185004-20185177(-) (11)	NA	Q9P6N5	Dihydrosphingosine 1-phosphate phosphatase C823.11	AT3G58490.1	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os03g59070.1	"phosphatase, putative, expressed"	AC235488_22.2	"Phosphoesterase, PA-phosphatase related AC235488.1 98822-95448 F EGN_Mt090430 200"	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.81999.1.A1_at	A	A1TS	POPTR_0001s36580	POPTR_0001s36580 (11)	scaffold_1:35233951-35234502(-) (11)	NA	Q9ZNW0	Adenylyltransferase and sulfurtransferase MOCS3	AT5G55130.1	"co-factor for nitrate, reductase and xanthine dehydrogenase 5 "	LOC_Os02g32460.1	"ThiF family domain containing protein, putative, expressed"	Medtr5g101010.1	UBA/THIF-type NAD/FAD binding fold; Rhodanese-like 	NA	GO:0003824|catalytic activity	NA
PtpAffx.82034.1.A1_at	A	A1TS	POPTR_0008s14440	POPTR_0008s14440 (10)	scaffold_8:9579566-9580227(+) (10)	NA	NA	NA	NA	NA	LOC_Os04g57650.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82059.1.A1_at	A	A1TS	POPTR_0014s08420	POPTR_0014s08420 (9)	scaffold_14:6263055-6264759(+) (9)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT4G00290.1	Mechanosensitive ion channel protein 	LOC_Os04g48940.2	"uncharacterized mscS family protein, putative, expressed"	AC235567_81.1	MscS Mechanosensitive ion channel AC235567.1 293100-287373 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.82116.1.A1_a_at	A	A1TS	POPTR_0001s10030	POPTR_0001s10030 (11)	scaffold_1:7756329-7756741(-) (11)	NA	Q2G6G9	50S ribosomal protein L25	AT4G23620.1	"Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain "	LOC_Os01g41030.1	"ribosomal protein L25, putative, expressed"	Medtr7g103270.1	Ribosomal protein L25 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0008097|5S rRNA binding	GO:0005840|ribosome
PtpAffx.82118.1.A1_at	A	A1MS	POPTR_0011s12260	POPTR_0011s12260 (9)	scaffold_11:15006756-15006992(-) (9)	NA	NA	NA	AT5G53750.1	CBS domain-containing protein 	LOC_Os10g35630.1	"cystathionin beta synthase protein, putative, expressed"	Medtr2g014790.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82120.1.A1_at	A	A1TS	POPTR_0001s12620	POPTR_0001s12620 (10)	scaffold_1:9774071-9774514(-) (10)//scaffold_797:286-729(-) (10)	POPTR_0797s00200 (7)	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82121.1.A1_at	A	A1MS	POPTR_0014s17740	POPTR_0014s17740 (11)	scaffold_14:14009074-14009315(-) (11)	NA	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT5G46570.1	BR-signaling kinase 2 	LOC_Os10g42110.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.82153.1.S1_at	A	A1TS	POPTR_0001s32400	POPTR_0001s32400 (11)	scaffold_1:30749994-30750806(+) (11)	NA	Q8R3D1	TBC1 domain family member 13	AT4G13730.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g68010.1	"TBC domain containing protein, expressed"	Medtr3g105370.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.82154.1.A1_at	A	A1MS	POPTR_0006s23100	POPTR_0006s23100 (11)	scaffold_6:21953105-21953231(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G12360.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82154.1.A1_s_at	A	A1TS	POPTR_0006s23100	POPTR_0006s23100 (11)	scaffold_6:21951807-21953104(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G12360.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82156.1.A1_s_at	A	A1TS	POPTR_0004s24390	POPTR_0004s24390 (11)	scaffold_4:23072433-23072570(+) (11)	NA	NA	NA	AT2G35610.1	xyloglucanase 113 	LOC_Os03g38930.1	expressed protein	Medtr8g086800.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82169.1.A1_at	A	A1TS	POPTR_0010s06460	POPTR_0010s06460 (9)	scaffold_10:7816714-7817708(-) (11)	NA	Q91YP2	"Neurolysin, mitochondrial"	AT1G67690.1	Zincin-like metalloproteases family protein 	LOC_Os01g67590.1	"oligopeptidase, putative, expressed"	Medtr3g103120.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.8217.1.S1_at	A	A1TS	POPTR_0269s00220	POPTR_0269s00220 (11)	scaffold_18:14581479-14581734(-) (11)//scaffold_269:12232-12487(-) (11)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.82170.1.A1_at	A	A1TS	POPTR_0010s01730	POPTR_0010s01730 (9)	scaffold_10:1906680-1906942(-) (9)	NA	Q94F30	Ubiquitin-like-specific protease ESD4	AT4G15880.1	Cysteine proteinases superfamily protein 	LOC_Os01g25370.1	"SUMO protease, putative, expressed"	Medtr8g138660.1	"Intermediate filament protein; Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.82173.1.A1_at	A	A1TS	POPTR_0019s10670	POPTR_0019s10670 (11)	scaffold_19:12181313-12181720(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g005500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82174.1.A1_at	A	A1TS	POPTR_0001s26980	POPTR_0001s26980 (11)	scaffold_1:25948575-25948927(-) (11)	NA	Q8IY18	Structural maintenance of chromosomes protein 5	AT5G15920.1	structural maintenance of chromosomes 5 	LOC_Os05g51790.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	Medtr3g040170.1	Lipocalin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82175.1.A1_at	A	A1TS	POPTR_0012s11340	POPTR_0012s11340 (11)	scaffold_12:11816692-11817281(-) (11)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G51060.1	NADPH/respiratory burst oxidase protein D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.82182.1.A1_s_at	A	A1TS	POPTR_0001s22120	POPTR_0001s22120 (11)	scaffold_1:20760105-20760372(-) (11)	NA	Q9SJK3	Argonaute-like protein At2g27880	AT2G27880.1	Argonaute family protein 	LOC_Os03g58600.1	"PAZ domain containing protein, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82184.1.S1_at	A	A1TS	POPTR_0004s07200	POPTR_0004s07200 (11)	scaffold_4:5955113-5956100(+) (11)	NA	Q84WV9	Glutaminyl-peptide cyclotransferase	AT4G25720.1	glutaminyl cyclase 	LOC_Os06g01410.1	"glutamine cyclotransferase precursor, putative, expressed"	Medtr4g009010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82186.1.A1_at	A	A1MS	POPTR_0006s07500	POPTR_0006s07500 (11)	scaffold_6:5429642-5429896(+) (11)	NA	Q5E9J7	tRNA-specific adenosine deaminase 2	AT1G48175.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os03g20570.1	"tRNA-specific adenosine deaminase 2, putative, expressed"	Medtr7g103640.1	"CMP/dCMP deaminase, zinc-binding "	NA	GO:0016787|hydrolase activity||GO:0008270|zinc ion binding	NA
PtpAffx.82205.1.A1_at	A	A1TS	POPTR_0014s16420	POPTR_0014s16420 (11)	scaffold_14:12500332-12500770(-) (11)	NA	Q15024	Exosome complex exonuclease RRP42	AT3G07750.2	3'-5'-exoribonuclease family protein 	LOC_Os12g21500.1	"exosome complex exonuclease, putative, expressed"	Medtr8g093050.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.82206.1.A1_at	A	A1TS	POPTR_0015s02180	POPTR_0015s02180 (11)	scaffold_15:1503316-1503791(+) (11)	NA	Q58DR2	DnaJ homolog subfamily B member 12	AT5G53150.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os02g30620.3	"dnaJ domain containing protein, expressed"	Medtr3g124470.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.82221.1.A1_at	A	A1MS	POPTR_0017s12870	POPTR_0017s12870 (10)	scaffold_17:13047166-13047340(-) (10)	NA	Q0D9J1	Alpha-amylase isozyme 2A	AT1G69830.1	alpha-amylase-like 3 	LOC_Os01g51754.1	"alpha-amylase precursor, putative, expressed"	Medtr7g012510.1	"Alpha amylase, catalytic region; Alpha-amylase beta-sheet, C-terminal "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
PtpAffx.8223.1.A1_at	A	A1TS	POPTR_0002s10420	POPTR_0002s10420 (11)	scaffold_2:7512998-7514281(+) (11)	NA	B2J5F1	Glucose-6-phosphate isomerase	AT4G24620.1	phosphoglucose isomerase 1 	LOC_Os09g29070.1	"glucose-6-phosphate isomerase, putative, expressed"	Medtr5g074950.1	Phosphoglucose isomerase (PGI) 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006096|glycolysis||GO:0006094|gluconeogenesis	GO:0004347|glucose-6-phosphate isomerase activity	NA
PtpAffx.82231.1.A1_at	A	A1TS	POPTR_0013s08600	POPTR_0013s08600 (9)	scaffold_13:7909325-7909598(-) (9)	NA	Q8L718	"ALBINO3-like protein 2, chloroplastic"	AT3G44370.1	"Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain "	LOC_Os06g07474.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g089280.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82232.1.A1_s_at	A	A2TS	POPTR_0002s01170	POPTR_0002s01170 (11)//POPTR_0005s27210 (10)	scaffold_2:619557-619602(+) (11)//scaffold_5:24962604-24962649(-) (10)	NA	C5D6U5	2-succinylbenzoate--CoA ligase	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008840.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.82248.1.A1_at	A	A1TS	POPTR_0004s22670	POPTR_0004s22670 (9)	scaffold_4:21526182-21526727(+) (11)	NA	Q9C8N5	Protein SENSITIVE TO PROTON RHIZOTOXICITY 1	AT5G22890.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os08g44830.1	"ZOS8-14 - C2H2 zinc finger protein, expressed"	Medtr3g101820.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.82251.1.A1_at	A	A1MS	POPTR_0006s24170	POPTR_0006s24170 (10)	scaffold_6:22831743-22832149(-) (10)	NA	NA	NA	AT4G33060.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g40050.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.82253.1.A1_at	A	A1TS	POPTR_0010s23940	POPTR_0010s23940 (11)	scaffold_10:20375499-20376426(-) (11)	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.82254.1.A1_at	A	A1TS	POPTR_0009s03800	POPTR_0009s03800 (11)	scaffold_9:4393015-4393620(+) (11)	NA	Q9XE58	Scarecrow-like protein 14	AT1G07530.1	SCARECROW-like 14 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr2g116870.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82255.1.A1_at	A	A1MS	POPTR_0018s02130	POPTR_0018s02130 (11)	scaffold_18:1889027-1889242(-) (11)	NA	Q6P6Q9	"Calcium uptake protein 1, mitochondrial"	AT4G32060.1	calcium-binding EF hand family protein 	LOC_Os02g39950.1	"EF hand family protein, putative, expressed"	Medtr3g137740.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82257.1.A1_at	A	A1TS	POPTR_0001s21180	POPTR_0001s21180 (10)	scaffold_1:19541977-19542430(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82259.1.A1_at	A	A1MS	POPTR_0005s27810	POPTR_0005s27810 (9)	scaffold_5:25295335-25295444(-) (9)	NA	Q9I8B3	RNA-binding protein 24-B	AT1G76460.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g48340.2	"RNA recognition motif containing protein, putative, expressed"	Medtr3g159840.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.82259.1.A1_s_at	A	A2TS	POPTR_0002s00610	POPTR_0005s27810 (11)//POPTR_0002s00610 (11)	scaffold_2:267025-267484(+) (11)//scaffold_5:25295757-25296200(-) (11)	NA	Q9I8B3	RNA-binding protein 24-B	AT1G76460.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g48340.2	"RNA recognition motif containing protein, putative, expressed"	Medtr3g159840.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.8229.1.S1_at	A	A1MS	POPTR_0004s13455	POPTR_0004s13455 (9)	scaffold_4:13554248-13554439(+) (9)	NA	P64956	Uncharacterized protein Mb2253c	AT3G01410.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g08050.1	"retrotransposon protein, putative, unclassified"	Medtr2g120570.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	GO:0016234|inclusion body
PtpAffx.82290.1.A1_s_at	A	A1TS	POPTR_0002s06090	POPTR_0002s06090 (11)	scaffold_2:4081973-4082434(+) (11)	NA	NA	NA	AT3G58850.1	phy rapidly regulated 2 	NA	NA	Medtr5g099000.1	"PAR2 ; transcription regulator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82295.1.A1_at	A	A1MS	POPTR_0005s02270	POPTR_0005s02270 (11)	scaffold_5:1487668-1487777(+) (11)	NA	NA	NA	AT5G27860.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). 	LOC_Os12g36740.1	"splicing factor, arginine/serine-rich 18, putative, expressed"	Medtr7g138420.1	"zgc:136322 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82306.1.A1_at	A	A1TS	POPTR_0010s19220	POPTR_0010s19220 (9)	scaffold_10:17204054-17204285(+) (9)	NA	NA	NA	AT1G13790.1	XH/XS domain-containing protein 	LOC_Os01g44230.1	"transcription factor X1, putative, expressed"	Medtr5g087360.1	"Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8231.1.A1_s_at	A	A1TS	POPTR_0018s05220	POPTR_0018s05220 (11)	scaffold_18:4718129-4718522(+) (11)	NA	NA	NA	AT2G26110.1	Protein of unknown function (DUF761) 	LOC_Os05g46340.1	expressed protein	Medtr1g020210.1	"cDNA-5-encoded protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82311.1.A1_at	A	A1TS	POPTR_0013s11610	POPTR_0013s11610 (11)	scaffold_13:12262037-12262552(-) (11)	NA	NA	NA	AT1G71970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22680.1); Has 58 Blast hits to 58 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82316.1.A1_at	A	A1TS	POPTR_0012s09980	POPTR_0012s09980 (9)	scaffold_12:10858374-10860536(-) (10)	NA	Q9VWA2	Probable deoxycytidylate deaminase	AT3G48540.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os01g55974.1	"deoxycytidylate deaminase, putative, expressed"	Medtr8g109000.1	"CMP/dCMP deaminase, zinc-binding "	NA	GO:0016787|hydrolase activity||GO:0008270|zinc ion binding	NA
PtpAffx.82322.1.A1_at	A	A1TS	POPTR_0013s15120	POPTR_0013s15120 (11)	scaffold_13:15174720-15175135(-) (11)	NA	NA	NA	AT1G06920.1	ovate family protein 4 	LOC_Os01g60810.1	"DUF623 domain containing protein, expressed"	Medtr5g083050.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82348.1.A1_at	A	A1MS	POPTR_0018s13660	POPTR_0018s13660 (10)	scaffold_18:13939702-13939892(-) (10)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.82364.1.A1_at	A	A1TS	POPTR_0001s28030	POPTR_0001s28030 (11)	scaffold_1:26836571-26837121(+) (11)	NA	Q9Y4W2	Protein LAS1 homolog	AT5G12220.1	las1-like family protein 	LOC_Os12g08800.1	"las1-like family protein, putative, expressed"	Medtr5g096290.1	Las1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82368.1.A1_a_at	A	A1MA	POPTR_0002s09310	POPTR_0002s09310 (11)	scaffold_2:6614164-6614293(-) (11)	NA	Q9FEP7	Sulfate transporter 1.3	AT1G22150.1	sulfate transporter 1;3 	LOC_Os03g09970.4	"sulfate transporter, putative, expressed"	CU651589_4.1	Sulphate transporter CU651589.4 23367-27023 H EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.82368.1.A1_at	A	A1MA	POPTR_0002s09310	POPTR_0002s09310 (10)	scaffold_2:6613904-6614347(-) (11)	NA	Q9FEP7	Sulfate transporter 1.3	AT1G22150.1	sulfate transporter 1;3 	LOC_Os03g09970.4	"sulfate transporter, putative, expressed"	CU651589_4.1	Sulphate transporter CU651589.4 23367-27023 H EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.82377.1.A1_at	A	A1TS	POPTR_0004s23200	POPTR_0004s23200 (11)	scaffold_4:21986295-21986760(+) (11)	NA	NA	NA	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr2g005630.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82382.1.A1_at	A	A1TS	POPTR_0009s02940	POPTR_0009s02940 (11)	scaffold_9:3685339-3685773(-) (11)	NA	NA	NA	AT2G31940.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 227 Blast hits to 227 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g27330.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr2g080100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82383.1.A1_at	A	A1MS	POPTR_0006s15350	POPTR_0006s15350 (10)	scaffold_6:12715978-12716475(+) (10)	NA	O82201	AP-4 complex subunit sigma	AT2G19790.1	SNARE-like superfamily protein 	LOC_Os08g30480.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr7g118420.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.82386.1.A1_at	A	A1TS	POPTR_0002s17590	POPTR_0002s17590 (11)	scaffold_2:13413847-13413977(-) (11)	NA	NA	NA	AT2G46630.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). 	NA	NA	Medtr7g145820.1	"Putative extensin, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82388.1.A1_at	A	A1TS	POPTR_0010s02380	POPTR_0010s02380 (9)	scaffold_10:2736638-2736840(-) (9)	NA	Q8YQL2	Carbamoyl-phosphate synthase large chain	AT1G29900.1	carbamoyl phosphate synthetase B 	LOC_Os01g38970.1	"carbamoyl-phosphate synthase large chain, putative, expressed"	Medtr2g111290.1	"Carbamoyl-phosphate synthase, large subunit, glutamine-dependent; MGS-like; "	GO:0006807|nitrogen compound metabolic process	GO:0004086|carbamoyl-phosphate synthase activity||GO:0005524|ATP binding	NA
PtpAffx.82392.1.A1_at	A	A1TS	POPTR_0012s09670	POPTR_0012s09670 (11)	scaffold_12:10632779-10641807(-) (11)	POPTR_0012s09660 (7)	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117340.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.82395.1.S1_s_at	A	A2TS	POPTR_0002s23850	POPTR_0002s23850 (11)//POPTR_0014s14180 (11)	scaffold_14:10378043-10378252(+) (11)//scaffold_2:21325053-21325260(-) (11)	NA	Q9LD18	Potassium transporter 4	AT3G02050.1	K+ uptake transporter 3 	LOC_Os07g47350.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.82413.1.A1_at	A	A1TS	POPTR_0013s11220	POPTR_0013s11220 (11)	scaffold_13:11897557-11898112(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT1G22610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g59520.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82419.1.A1_at	A	A1TS	POPTR_0010s18810	POPTR_0010s18810 (11)	scaffold_10:16942565-16943256(-) (11)	NA	Q921G8	Gamma-tubulin complex component 2	AT5G17410.2	Spc97 / Spc98 family of spindle pole body (SBP) component 	LOC_Os04g42330.1	"Spc97 / Spc98 family protein, putative, expressed"	Medtr8g011890.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
PtpAffx.8242.1.S1_at	A	A1TS	POPTR_0004s11860	POPTR_0004s11860 (11)	scaffold_4:10708824-10709337(-) (11)	NA	NA	NA	AT3G29370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	AC231342_34.1	Basic helix-loop-helix dimerisation region bHLH AC231342.3 142448-141677 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82427.1.A1_at	A	A1MS	POPTR_0005s20990	POPTR_0005s20990 (11)	scaffold_5:20120813-20120943(+) (11)	NA	Q9SQH6	Probable auxin efflux carrier component 6	AT1G77110.1	Auxin efflux carrier family protein 	LOC_Os11g04190.1	"auxin efflux carrier component, putative, expressed"	Medtr4g154810.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.82437.2.A1_at	A	A1MS	POPTR_0006s24490	POPTR_0006s24490 (9)	scaffold_6:23082424-23082892(+) (9)	NA	Q54Y03	Probable adenylate kinase isoenzyme 6	AT5G60340.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g22950.1	"adenylate kinase isoenzyme 6, putative, expressed"	Medtr5g094960.2	"Probable adenylate kinase isoenzyme 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82441.1.A1_at	A	A1TS	POPTR_0011s02010	POPTR_0011s02010 (11)	scaffold_11:1676831-1676961(-) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82458.1.A1_s_at	A	A1TS	POPTR_0009s05930	POPTR_0009s05930 (11)	scaffold_9:5884383-5885146(+) (11)	NA	Q8LG50	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	AT3G57650.1	lysophosphatidyl acyltransferase 2 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.82464.1.A1_at	A	A1TS	POPTR_0006s26730	POPTR_0006s26730 (11)	scaffold_6:24854751-24855232(+) (11)	NA	O95372	Acyl-protein thioesterase 2	AT5G20060.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g07960.3	"acyl-protein thioesterase, putative, expressed"	Medtr3g136590.1	Phospholipase/Carboxylesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.82465.1.A1_at	A	A1TS	POPTR_0014s10720	POPTR_0014s10720 (11)	scaffold_14:8007160-8007434(+) (11)	NA	P55826	"Protoporphyrinogen oxidase, chloroplastic"	AT4G01690.1	Flavin containing amine oxidoreductase family 	LOC_Os01g18320.1	"protoporphyrinogen oxidase, chloroplast precursor, putative, expressed"	Medtr8g142180.1	Protoporphyrinogen oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.82482.1.A1_at	A	A1TA	POPTR_0006s05210	POPTR_0006s05210 (11)	scaffold_6:3673917-3674009(+) (11)	NA	Q9LVJ7	Nuclear transcription factor Y subunit A-6	AT3G14020.1	"nuclear factor Y, subunit A6 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.82489.1.A1_at	A	A1TS	POPTR_0010s16140	POPTR_0010s16140 (11)	scaffold_10:15162050-15162320(-) (11)	NA	Q9ASW1	"Probable beta-1,3-galactosyltransferase 16"	AT3G06440.1	Galactosyltransferase family protein 	LOC_Os01g22550.1	"galactosyltransferase family protein, putative, expressed"	Medtr5g044460.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.825.1.A1_at	A	A1TS	POPTR_0014s03070	POPTR_0014s03070 (11)	scaffold_14:2488607-2489038(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g28510.1	"EF hand family protein, putative, expressed"	Medtr1g024720.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82501.1.A1_at	A	A1MS	POPTR_0017s12040	POPTR_0017s12040 (11)	scaffold_17:12174302-12174586(-) (11)	NA	Q43847	"Granule-bound starch synthase 2, chloroplastic/amyloplastic"	AT3G01180.1	starch synthase 2 	LOC_Os10g30156.1	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.82507.1.S1_s_at	A	A1TS	POPTR_0010s04480	POPTR_0010s04480 (11)	scaffold_10:5562685-5563895(-) (11)	NA	A3KPN8	Tetratricopeptide repeat protein 38	AT1G27150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g48380.1	expressed protein	Medtr5g038480.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8251.1.S1_at	A	A1TS	POPTR_0007s03140	POPTR_0007s03140 (11)	scaffold_7:1812003-1813893(+) (11)	NA	Q6AVK1	UPF0727 protein	AT4G33640.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g48390.1	expressed protein	Medtr2g009700.1	"Uncharacterized protein C6orf115, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82510.1.S1_s_at	A	A2TS	POPTR_0019s00440	POPTR_0031s00290 (11)//POPTR_0019s00440 (11)	scaffold_19:225903-226858(-) (11)//scaffold_19:299604-300584(+) (9)//scaffold_31:129226-130187(+) (11)	POPTR_0019s00500 (8)//POPTR_0004s14340 (7)//POPTR_0019s00530 (7)	NA	NA	AT5G08450.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). 	LOC_Os07g29450.1	expressed protein	Medtr7g035190.1	Histone deacetylation protein Rxt3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82511.1.A1_at	A	A1TS	POPTR_0005s16690	POPTR_0005s16690 (11)	scaffold_5:13717094-13717561(+) (11)	NA	Q8H1E4	Ethylene-responsive transcription factor RAP2-4	AT1G78080.1	related to AP2 4 	LOC_Os03g09170.1	"ethylene-responsive transcription factor, putative, expressed"	CU651566_18.1	Pathogenesis-related transcriptional factor and ERF CU651566.9 95071-96871 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.82519.1.A1_s_at	A	A1TS	POPTR_0016s02320	POPTR_0016s02320 (10)	scaffold_16:1126272-1127344(-) (11)	NA	NA	NA	AT5G60580.3	RING/U-box superfamily protein 	LOC_Os06g46366.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr4g081620.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82521.1.A1_s_at	A	A1TS	POPTR_0003s16170	POPTR_0003s16170 (11)	scaffold_3:15781971-15784512(+) (11)	POPTR_0001s13070 (8)	Q5W7F2	ADP-ribosylation factor GTPase-activating protein AGD3	AT5G13300.1	ARF GTPase-activating protein 	LOC_Os09g33600.1	"ARF GTPase-activating domain-containing protein, putative, expressed"	Medtr7g020730.1	Arf GTPase activating protein; BAR; Pleckstrin homology-type 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.82523.1.A1_at	A	A1TS	POPTR_0002s05960	POPTR_0002s05960 (11)	scaffold_2:3929861-3930213(+) (11)	NA	NA	NA	AT3G59090.1	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os01g54784.1	expressed protein	Medtr4g165460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82525.1.A1_at	A	A1TA	POPTR_0017s07760	POPTR_0017s07760 (11)	scaffold_17:6036883-6037268(+) (11)	NA	O57683	Splicing factor 3B subunit 1	AT5G64270.1	"splicing factor, putative "	LOC_Os02g05310.4	"splicing factor 3B subunit 1, putative, expressed"	Medtr2g009180.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82539.1.A1_at	A	A1TS	POPTR_0018s13050	POPTR_0018s13050 (11)	scaffold_18:13517336-13517517(+) (11)	NA	Q9LDI3	CBL-interacting serine/threonine-protein kinase 24	AT5G35410.1	Protein kinase superfamily protein 	LOC_Os06g40370.1	"CAMK_KIN1/SNF1/Nim1_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g120590.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.82576.1.A1_at	A	A1TS	POPTR_0015s07790	POPTR_0015s07790 (10)	scaffold_15:9088930-9089374(-) (11)	NA	O14099	Uncharacterized RING finger protein C2F3.16	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.82593.1.A1_at	A	A1TS	POPTR_0004s07050	POPTR_0004s07050 (11)	scaffold_4:5861265-5861740(-) (11)	NA	Q9FLX8	Probable WRKY transcription factor 27	AT5G52830.1	WRKY DNA-binding protein 27 	LOC_Os04g50920.1	"OsWRKY37 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g126350.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.82596.1.A1_at	A	A1TS	POPTR_0006s06640	POPTR_0006s06640 (11)	scaffold_6:4813967-4814214(-) (11)	NA	P29602	Cucumber peeling cupredoxin	AT2G31050.1	Cupredoxin superfamily protein 	LOC_Os08g04340.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.82607.1.A1_at	A	A1TS	POPTR_0006s14300	POPTR_0006s14300 (11)	scaffold_6:11625793-11626167(+) (11)	NA	NA	NA	AT5G20670.1	Protein of unknown function (DUF1677) 	LOC_Os06g09900.1	expressed protein	Medtr8g132700.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82611.1.A1_at	A	A1TS	POPTR_0002s03660	POPTR_0002s03660 (11)	scaffold_2:2262087-2262600(-) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G75240.1	homeobox protein 33 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g020380.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Zinc finger, C2H2-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8266.2.S1_a_at	A	A1TS	POPTR_0002s01760	POPTR_0002s01760 (11)	scaffold_2:936109-936994(-) (11)	POPTR_0005s26720 (6)	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16980.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82663.1.A1_at	A	A1TS	POPTR_0002s09540	POPTR_0002s09540 (11)	scaffold_2:6829886-6830534(-) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT5G65160.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g51730.1	"dnaJ homolog subfamily C member 7, putative, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82668.1.A1_at	A	A1TS	POPTR_0013s15320	POPTR_0013s15320 (11)	scaffold_13:15338620-15338913(+) (11)	POPTR_1061s00200 (8)//POPTR_0013s15310 (8)	Q501D8	Tryptophan N-hydroxylase 2	AT2G22330.1	"cytochrome P450, family 79, subfamily B, polypeptide 3 "	LOC_Os04g08828.1	"cytochrome P450, putative, expressed"	Medtr8g088320.1	Cecropin; Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.82701.1.A1_at	A	A1TS	POPTR_0012s08830	POPTR_0012s08830 (11)	scaffold_12:9894033-9894732(+) (11)	NA	Q15645	Thyroid receptor-interacting protein 13	AT4G24710.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g40290.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g114860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.82749.1.A1_s_at	A	A1MS	POPTR_0007s04940	POPTR_0007s04940 (11)	scaffold_7:3116488-3116771(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8275.1.S1_at	A	A1TS	POPTR_0016s01640	POPTR_0016s01640 (11)	scaffold_16:748624-749170(+) (11)	NA	Q9SV07	Acyl-CoA--sterol O-acyltransferase 1	AT3G51970.1	acyl-CoA sterol acyl transferase 1 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr2g029750.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82764.1.A1_s_at	A	A1TS	POPTR_0014s14720	POPTR_0014s14720 (11)	scaffold_14:10803402-10803946(+) (11)	NA	Q9LYT5	Probable pectinesterase/pectinesterase inhibitor 35	AT3G59010.1	pectin methylesterase 61 	LOC_Os02g54190.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.8277.1.S1_at	A	A1TS	POPTR_0014s15510	POPTR_0014s15510 (11)	scaffold_14:11555294-11555789(+) (11)	NA	NA	NA	AT2G32650.2	RmlC-like cupins superfamily protein 	LOC_Os02g54360.1	"enzyme of the cupin superfamily protein, putative, expressed"	Medtr1g105770.1	"Cupin, RmlC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82781.1.S1_at	A	A1TS	POPTR_0003s07420	POPTR_0003s07420 (9)	scaffold_3:8978302-8978671(-) (9)	NA	Q39079	Chaperone protein dnaJ 13	AT2G35720.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g36370.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g012600.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.828.1.A1_x_at	A	A1TS	POPTR_0004s04450	POPTR_0004s04450 (11)	scaffold_4:3218102-3219279(+) (11)	NA	Q03211	Pistil-specific extensin-like protein	AT2G34700.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os01g52660.1	"POEI51 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr5g049780.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.828.2.A1_at	A	A1TS	POPTR_0011s05340	POPTR_0011s05340 (11)	scaffold_11:5264390-5264773(+) (11)	NA	Q03211	Pistil-specific extensin-like protein	AT2G33790.1	arabinogalactan protein 30 	LOC_Os01g07010.1	"POEI38 - Pollen Ole e I allergen and extensin family protein precursor, putative"	Medtr4g141270.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.828.3.A1_a_at	A	A1TS	POPTR_0001s33910	POPTR_0001s33910 (11)	scaffold_1:32075193-32075409(+) (11)	NA	NA	NA	AT3G27160.1	Ribosomal protein S21 family protein 	LOC_Os02g09590.1	"ribosome, putative, expressed"	Medtr8g109940.1	Ribosomal protein S21 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.82804.1.A1_at	A	A1TS	POPTR_0008s10370	POPTR_0008s10370 (11)	scaffold_8:6497046-6497475(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82824.1.A1_at	A	A1TA	POPTR_0011s15020	POPTR_0011s15020 (10)	scaffold_11:17215663-17215936(+) (10)	NA	Q9SV83	Probable receptor-like protein kinase At4g10390	AT4G10390.1	Protein kinase superfamily protein 	LOC_Os04g45730.1	"protein kinase domain containing protein, expressed"	Medtr4g130010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.82838.1.S1_at	A	A1TS	POPTR_0001s25780	POPTR_0001s25780 (11)	scaffold_1:24810313-24810659(-) (11)	NA	Q84T03	DEAD-box ATP-dependent RNA helicase 27	AT3G18600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g58810.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g115790.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.82840.1.A1_at	A	A1TS	POPTR_0003s16920	POPTR_0003s16920 (11)	scaffold_3:16426035-16426591(+) (11)	NA	NA	NA	AT1G27300.1	unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os02g30610.2	expressed protein	Medtr3g104080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82845.1.S1_at	A	A1TS	POPTR_0006s12200	POPTR_0006s12200 (9)	scaffold_6:9347020-9347740(-) (9)	NA	NA	NA	NA	NA	LOC_Os03g01710.1	expressed protein	Medtr1g074280.1	Prefoldin 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
PtpAffx.82851.1.S1_at	A	A1TS	POPTR_0004s05420	POPTR_0004s05420 (11)	scaffold_4:4173355-4173908(-) (11)	NA	NA	NA	AT2G34070.1	TRICHOME BIREFRINGENCE-LIKE 37 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr2g019150.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82854.1.A1_at	A	A1TS	POPTR_0010s14040	POPTR_0010s14040 (11)	scaffold_10:13751438-13751792(-) (11)	NA	Q5EA37	Coiled-coil domain-containing protein 130	AT1G25682.1	Family of unknown function (DUF572)  	LOC_Os02g21880.1	"coiled-coil domain-containing protein, putative, expressed"	Medtr1g118070.1	Protein of unknown function DUF572 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82861.1.A1_at	A	A1TS	POPTR_0001s22710	POPTR_0001s22710 (11)	scaffold_1:21603860-21604345(+) (11)	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82861.1.A1_s_at	A	A1TS	POPTR_0001s22710	POPTR_0001s22710 (9)	scaffold_1:21603810-21603992(+) (9)	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82864.1.A1_s_at	A	A1TS	POPTR_0004s15110	POPTR_0004s15110 (11)	scaffold_4:15784630-15785000(-) (11)	NA	P53681	CDPK-related protein kinase	AT3G50530.1	CDPK-related kinase 	LOC_Os07g44710.1	"CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g129190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.82865.1.A1_at	A	A1TS	POPTR_0013s07650	POPTR_0013s07650 (9)	scaffold_13:6489894-6490365(+) (9)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT5G16730.1	Plant protein of unknown function (DUF827) 	LOC_Os05g02820.1	"protein transport protein-related, putative, expressed"	Medtr4g107430.1	"protein transport protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82882.1.A1_at	A	A1TS	POPTR_0004s10110	POPTR_0004s10110 (11)	scaffold_4:8679911-8680351(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g126590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82888.1.A1_at	A	A1TS	POPTR_0006s01790	POPTR_0006s01790 (10)	scaffold_6:1082576-1082859(+) (10)	NA	B9IH36	UPF0497 membrane protein 5	AT2G35760.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g10030.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr2g030530.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82894.1.A1_s_at	A	A1TS	POPTR_0003s07130	POPTR_0003s07130 (11)	scaffold_3:8719861-8719934(-) (11)	NA	Q9C8M9	Protein STRUBBELIG-RECEPTOR FAMILY 6	AT1G53730.1	STRUBBELIG-receptor family 6 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.829.1.A1_at	A	A1TS	POPTR_0014s09810	POPTR_0014s09810 (11)	scaffold_14:7307519-7308050(+) (11)	NA	NA	NA	AT2G46630.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). 	NA	NA	Medtr7g145820.1	"Putative extensin, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.829.2.S1_at	A	A1TS	POPTR_0002s17590	POPTR_0002s17590 (10)	scaffold_2:13412246-13412787(-) (10)	NA	NA	NA	AT2G46630.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). 	NA	NA	Medtr7g145820.1	"Putative extensin, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82917.1.A1_at	A	A1TS	POPTR_0002s03750	POPTR_0002s03750 (10)	scaffold_2:2330958-2331547(-) (10)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT2G20470.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os10g33640.1	"AGC_AGC_other_NDRh_TRCd.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.82941.1.A1_at	A	A1TS	POPTR_0002s01120	POPTR_0002s01120 (9)	scaffold_2:601124-601814(-) (10)	NA	P62323	Small nuclear ribonucleoprotein Sm D3	AT1G20580.1	Small nuclear ribonucleoprotein family protein 	LOC_Os02g01250.1	"LSM domain containing protein, expressed"	Medtr4g141250.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82953.1.S1_s_at	A	A1TS	POPTR_0004s10620	POPTR_0004s10620 (11)	scaffold_4:9148455-9148963(-) (11)	NA	D1CDT8	ATP-dependent zinc metalloprotease FtsH	AT3G02450.1	"cell division protein ftsH, putative "	LOC_Os04g39190.1	"cell division protease ftsH homolog 4, putative, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.830.1.A1_at	A	A1TS	POPTR_0013s14890	POPTR_0013s14890 (10)	scaffold_13:14973273-14973746(-) (10)	NA	Q56YT0	Laccase-3	AT2G30210.1	laccase 3 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr5g081380.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.83041.1.A1_s_at	A	A1TS	POPTR_0010s15130	POPTR_0010s15130 (11)	scaffold_10:14483818-14484449(-) (11)	NA	Q9FGY1	Beta-D-xylosidase 1	AT5G49360.1	beta-xylosidase 1 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.8309.1.S1_at	A	A1TS	POPTR_0016s05340	POPTR_0016s05340 (11)	scaffold_16:3286913-3287360(-) (11)	NA	Q9XFW4	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	AT3G57650.1	lysophosphatidyl acyltransferase 2 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.831.1.A1_at	A	A1TS	POPTR_0002s21740	POPTR_0002s21740 (11)	scaffold_2:18311592-18312105(+) (11)	NA	NA	NA	AT4G03965.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g147420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83113.2.S1_a_at	A	A1TS	POPTR_0014s09450	POPTR_0014s09450 (11)	scaffold_14:7023809-7024146(+) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT2G46500.2	phosphoinositide 4-kinase gamma 4 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	AC235758_32.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin AC235758.1 205204-208422 E EGN_Mt090430 200"	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.83148.1.S1_s_at	A	A2TS	POPTR_0008s10480	POPTR_0010s15590 (11)//POPTR_0008s10480 (11)	scaffold_10:14749795-14750307(+) (11)//scaffold_8:6568297-6568823(-) (11)	NA	Q54YA0	Probable ATP-citrate synthase	AT3G06650.1	ATP-citrate lyase B-1 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.83148.2.S1_a_at	A	A1TS	POPTR_0008s10480	POPTR_0008s10480 (11)	scaffold_8:6570463-6571433(-) (11)	NA	Q54YA0	Probable ATP-citrate synthase	AT3G06650.1	ATP-citrate lyase B-1 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.83148.2.S1_s_at	A	A2TS	POPTR_0008s10480	POPTR_0010s15590 (11)//POPTR_0008s10480 (11)	scaffold_10:14746901-14748586(+) (11)//scaffold_8:6570029-6571411(-) (10)	NA	Q54YA0	Probable ATP-citrate synthase	AT3G06650.1	ATP-citrate lyase B-1 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.83168.1.S1_s_at	A	A1TS	POPTR_0018s14820	POPTR_0018s14820 (11)	scaffold_18:14881812-14882560(+) (11)	NA	NA	NA	AT5G58130.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g04560.1	"marker Xucw84, putative, expressed"	Medtr2g055570.1	"Pyridoxal-dependent decarboxylase; Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83187.1.S1_at	A	A1TS	POPTR_0002s13730	POPTR_0002s13730 (11)	scaffold_2:10192162-10194683(-) (11)	NA	NA	NA	AT4G01710.1	ARP2/3 complex 16 kDa subunit (p16-Arc) 	LOC_Os11g35360.1	"actin polymerization factor, putative, expressed"	NA	NA	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.8321.1.S1_at	A	A1TS	POPTR_0006s04490	POPTR_0006s04490 (11)	scaffold_6:3055998-3058046(+) (11)	NA	NA	NA	AT2G41600.3	Mitochondrial glycoprotein family protein 	LOC_Os12g04210.1	"mitochondrial glycoprotein, putative, expressed"	Medtr7g108260.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
PtpAffx.83213.1.A1_at	A	A1TS	POPTR_0017s13870	POPTR_0017s13870 (11)	scaffold_17:14068826-14069333(-) (11)	NA	P54493	Rhomboid protease gluP	AT5G38510.2	Rhomboid-related intramembrane serine protease family protein 	LOC_Os02g22100.1	"OsRhmbd6 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.83247.1.S1_s_at	A	A1TS	POPTR_0001s27440	POPTR_0001s27440 (11)	scaffold_1:26345749-26346596(-) (11)	NA	Q9SZ30	"Imidazole glycerol phosphate synthase hisHF, chloroplastic"	AT4G26900.1	HIS HF 	LOC_Os03g15120.1	"imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.8326.2.A1_at	A	A1TS	POPTR_0010s11850	POPTR_0010s11850 (11)	scaffold_10:12006377-12006417(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8326.4.S1_at	A	A1TS	POPTR_0008s13290	POPTR_0008s13290 (11)	scaffold_8:8709491-8709896(-) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.3	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8326.5.A1_at	A	A1TS	POPTR_0001s24410	POPTR_0001s24410 (11)	scaffold_1:23695257-23695731(-) (11)	NA	NA	NA	AT3G46450.2	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os03g60610.3	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr4g078780.1	"Cellular retinaldehyde-binding/triple function, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.833.1.A1_at	A	A1TS	POPTR_0009s12250	POPTR_0009s12250 (11)	scaffold_9:10025490-10025997(+) (11)	NA	P24068	Ocs element-binding factor 1	AT1G75390.1	basic leucine-zipper 44 	LOC_Os02g03960.1	"CPuORF1 - conserved peptide uORF-containing transcript, expressed"	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.83319.1.S1_s_at	A	A1TS	POPTR_0009s01900	POPTR_0009s01900 (11)	scaffold_9:2376251-2377514(+) (11)	NA	Q6MD85	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	AT5G60600.3	4-hydroxy-3-methylbut-2-enyl diphosphate synthase 	LOC_Os02g39160.1	"hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed"	Medtr2g110470.1	IspG protein; Dihydropteroate synthase-like 	GO:0055114|oxidation reduction||GO:0016114|terpenoid biosynthetic process	GO:0046429|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	NA
PtpAffx.8332.1.S1_at	A	A1TS	POPTR_0006s10480	POPTR_0006s10480 (11)	scaffold_6:7823807-7825237(-) (11)	NA	P25699	"Ferritin, chloroplastic"	AT5G01600.1	ferretin 1 	LOC_Os12g01530.2	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr7g076070.1	Rubrerythrin; Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
PtpAffx.83321.1.A1_at	A	A1TS	POPTR_0004s15530	POPTR_0004s15530 (11)	scaffold_4:16140210-16140646(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g093240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83344.1.S1_at	A	A1TS	POPTR_0006s08310	POPTR_0006s08310 (11)	scaffold_6:6041816-6042379(+) (11)	NA	P45482	Cell division protein ftsZ	AT3G52750.1	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.83353.1.A1_at	A	A1TS	POPTR_0002s18720	POPTR_0002s18720 (10)	scaffold_2:14586822-14587391(+) (10)	NA	Q5FW14	Charged multivesicular body protein 7	AT3G62080.2	SNF7 family protein 	LOC_Os01g18280.1	"SNF7 domain containing protein, putative, expressed"	Medtr7g134220.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.8338.1.S1_at	A	A1TS	POPTR_0001s36290	POPTR_0001s36290 (11)	scaffold_1:34843331-34843457(+) (11)	NA	P25861	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT3G04120.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.83404.1.A1_at	A	A1TS	POPTR_0009s07320	POPTR_0009s07320 (9)	scaffold_9:6862923-6863549(+) (9)	NA	P48419	"Flavonoid 3',5'-hydroxylase 2"	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os03g25150.1	"transposon protein, putative, unclassified, expressed"	Medtr3g169570.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.8343.1.A1_at	A	A1TS	POPTR_0015s01290	POPTR_0015s01290 (11)	scaffold_15:812832-813465(-) (11)	NA	P49599	Protein phosphatase 2C 57	AT4G27800.1	thylakoid-associated phosphatase 38 	LOC_Os01g37130.2	"protein phosphatase 2C, putative, expressed"	Medtr8g122540.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8343.1.A1_s_at	A	A1TS	POPTR_0015s01290	POPTR_0015s01290 (11)	scaffold_15:812089-812707(-) (11)	NA	P49599	Protein phosphatase 2C 57	AT4G27800.1	thylakoid-associated phosphatase 38 	LOC_Os01g37130.2	"protein phosphatase 2C, putative, expressed"	Medtr8g122540.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8343.2.A1_a_at	A	A1TS	POPTR_0015s01290	POPTR_0015s01290 (11)	scaffold_15:814890-815060(-) (11)	NA	P49599	Protein phosphatase 2C 57	AT4G27800.1	thylakoid-associated phosphatase 38 	LOC_Os01g37130.2	"protein phosphatase 2C, putative, expressed"	Medtr8g122540.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8343.2.A1_s_at	A	A1TS	POPTR_0015s01290	POPTR_0015s01290 (11)	scaffold_15:811870-812101(-) (11)	NA	P49599	Protein phosphatase 2C 57	AT4G27800.1	thylakoid-associated phosphatase 38 	LOC_Os01g37130.2	"protein phosphatase 2C, putative, expressed"	Medtr8g122540.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83434.1.S1_at	A	A1TS	POPTR_0007s14840	POPTR_0007s14840 (10)	scaffold_7:14553725-14555409(-) (10)	NA	O81007	Putative glycosyltransferase 7	AT2G22900.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g49140.1	"glycosyltransferase, putative, expressed"	Medtr5g015410.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
PtpAffx.83470.1.S1_at	A	A1TS	POPTR_0005s24330	POPTR_0005s24330 (11)	scaffold_5:22921845-22923612(-) (11)	NA	P0C1S9	Sn1-specific diacylglycerol lipase beta	AT2G42450.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g39790.1	"lipase, putative, expressed"	Medtr1g147130.2	"Lipase, active site "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.83479.1.S1_at	A	A1TS	POPTR_0017s12990	POPTR_0017s12990 (11)	scaffold_17:13165248-13165606(+) (11)	NA	Q9S7I6	LRR receptor-like serine/threonine-protein kinase RPK2	AT3G02130.1	receptor-like protein kinase 2 	LOC_Os07g41140.1	"receptor-like protein kinase precursor, putative, expressed"	AC231342_17.1	Tyrosine protein kinase AC231342.3 81719-78663 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.83486.1.S1_at	A	A1TS	POPTR_0018s09340	POPTR_0018s09340 (11)	scaffold_18:10217582-10221355(+) (11)	NA	B0JSX3	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT3G25660.1	Amidase family protein 	LOC_Os04g55050.1	"amidase, putative, expressed"	Medtr3g064520.1	Glutamyl-tRNA(Gln) amidotransferase A subunit 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.83489.1.S1_at	A	A1TS	POPTR_0004s04380	POPTR_0004s04380 (10)	scaffold_4:3142246-3143872(+) (10)	NA	Q9M0Y8	Vesicle-fusing ATPase	AT4G04910.1	AAA-type ATPase family protein 	LOC_Os05g44310.1	"vesicle-fusing ATPase, putative, expressed"	AC233659_3.1	AAA ATPase AC233659.1 11110-14927 E EGN_Mt090430 200	NA	GO:0005524|ATP binding	NA
PtpAffx.835.1.S1_at	A	A1TS	POPTR_0008s17270	POPTR_0008s17270 (9)	scaffold_8:11599270-11599415(-) (9)	POPTR_0010s07510 (7)	Q9DC48	Pre-mRNA-processing factor 17	AT1G10580.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g27970.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086930.1	"Pre-mRNA-processing factor 17, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83506.1.S1_at	A	A1TS	POPTR_0010s13540	POPTR_0010s13540 (11)	scaffold_10:13360636-13361150(-) (11)	NA	Q9CA27	Ethylene-responsive transcription factor ERF118	AT1G68550.2	Integrase-type DNA-binding superfamily protein 	LOC_Os09g13940.4	"AP2 domain containing protein, expressed"	AC233660_41.1	Pathogenesis-related transcriptional factor and ERF AC233660.2 151624-147758 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.8352.1.S1_at	A	A1TS	POPTR_0011s00850	POPTR_0011s00850 (10)	scaffold_11:430607-439955(+) (11)	POPTR_0011s00860 (6)	NA	NA	NA	NA	LOC_Os03g59380.1	"LTPL28 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83521.1.A1_at	A	A1TS	POPTR_0011s13030	POPTR_0011s13030 (10)	scaffold_11:15751719-15752208(+) (10)	NA	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT4G21380.1	receptor kinase 3 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83524.1.A1_at	A	A1TS	POPTR_0018s10600	POPTR_0018s10600 (11)	scaffold_18:11493041-11493542(-) (11)	NA	Q9SNC3	Fasciclin-like arabinogalactan protein 4	AT3G46550.1	Fasciclin-like arabinogalactan family protein 	LOC_Os01g62380.1	"fasciclin-like arabinogalactan protein, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83548.1.S1_at	A	A1TS	POPTR_0013s06440	POPTR_0013s06440 (11)	scaffold_13:5016240-5019139(+) (11)	NA	Q9SGE9	Probable phenylalanyl-tRNA synthetase beta chain	AT1G72550.1	tRNA synthetase beta subunit family protein 	LOC_Os05g48510.1	"phenylalanyl-tRNA synthetase beta chain, putative, expressed"	Medtr8g115440.1	"Phenylalanyl-tRNA synthetase, beta subunit archae/euk cytosolic "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0003723|RNA binding	NA
PtpAffx.83553.1.A1_at	A	A1TS	POPTR_0003s17690	POPTR_0003s17690 (11)	scaffold_3:16990508-16991008(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83555.1.S1_s_at	A	A1TS	POPTR_0008s13430	POPTR_0008s13430 (11)	scaffold_8:8816122-8816979(-) (11)	NA	O75694	Nuclear pore complex protein Nup155	AT1G14850.1	nucleoporin 155 	LOC_Os06g20090.1	"NUP155, putative, expressed"	Medtr4g157110.1	Non-repetitive/WGA-negative nucleoporin 	GO:0006913|nucleocytoplasmic transport	GO:0017056|structural constituent of nuclear pore	GO:0005643|nuclear pore
PtpAffx.83574.1.S1_at	A	A1TS	POPTR_0004s22560	POPTR_0004s22560 (11)	scaffold_4:21421207-21421529(+) (11)	NA	Q4QSC8	Shugoshin-1	AT3G44960.1	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g31930.1	"shugoshin-1, putative, expressed"	Medtr4g076490.1	hypothetical protein 	GO:0045132|meiotic chromosome segregation	NA	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.83594.1.A1_at	A	A1TS	POPTR_0011s16060	POPTR_0011s16060 (11)	scaffold_11:18035430-18036906(+) (11)	NA	Q7Z9I2	Uncharacterized oxidoreductase C663.09c	AT4G20760.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os12g41590.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83596.1.S1_at	A	A1TS	POPTR_0001s32260	POPTR_0001s32260 (11)	scaffold_1:30663763-30664383(-) (11)	NA	NA	NA	AT3G24100.1	Uncharacterised protein family SERF 	LOC_Os05g33700.1	4F5 protein family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83626.1.S1_at	A	A1TS	POPTR_0002s25690	POPTR_0002s25690 (11)	scaffold_2:22764798-22766135(+) (11)	NA	Q8RY79	Tyrosine decarboxylase 1	AT2G20340.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os07g25590.1	"decarboxylase, putative, expressed"	Medtr7g117140.1	Pyridoxal-dependent decarboxylase; ; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.8363.1.S1_at	A	A1TS	POPTR_0006s24270	POPTR_0006s24270 (11)	scaffold_6:22911690-22912232(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g019930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83652.1.A1_at	A	A1TS	POPTR_0001s23660	POPTR_0001s23660 (11)	scaffold_1:23048463-23048961(+) (11)	NA	NA	NA	AT2G27660.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os09g31980.1	"DC1 domain-containing protein, putative"	Medtr7g112030.1	C1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83673.1.A1_at	A	A1TS	POPTR_0002s17040	POPTR_0002s17040 (10)	scaffold_2:12813712-12815080(-) (10)	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT4G01050.1	thylakoid rhodanese-like 	LOC_Os02g15750.1	expressed protein	AC233680_8.1	"coded for by A. thaliana cDNA T22670; coded for by A. thaliana cDNA T44720; coded for by A. thaliana cDNA T41991; coded for by A. thaliana cDNA AA042110, putative AC233680.1 46729-45900 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.837.1.A1_s_at	A	A1TS	POPTR_0002s02100	POPTR_0002s02100 (11)	scaffold_2:1133423-1133560(-) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.83718.1.S1_at	A	A1TS	POPTR_0015s01520	POPTR_0015s01520 (9)	scaffold_15:946907-950654(+) (9)	NA	Q92QQ2	ATP-dependent Clp protease ATP-binding subunit ClpX	AT5G53350.1	CLP protease regulatory subunit X 	LOC_Os02g35630.1	"AAA family ATPase, putative, expressed"	Medtr3g123850.1	"ClpX, ATPase regulatory subunit "	NA	GO:0005524|ATP binding	NA
PtpAffx.83747.1.S1_at	A	A1TS	POPTR_0003s10740	POPTR_0003s10740 (9)	scaffold_3:11638827-11639642(+) (9)	NA	Q8U4K7	2-phosphoglycerate kinase	AT5G61450.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g28260.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83752.1.S1_at	A	A1TS	POPTR_0018s08180	POPTR_0018s08180 (11)	scaffold_18:9011855-9012316(+) (11)	POPTR_0006s25360 (7)	Q99685	Monoglyceride lipase	AT5G11650.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g10250.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g130390.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83818.1.S1_s_at	A	A1TS	POPTR_0007s04730	POPTR_0007s04730 (10)	scaffold_7:2943512-2943898(-) (11)	NA	NA	NA	AT4G33480.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3727 (InterPro:IPR022203); Has 348 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). 	LOC_Os04g59570.2	expressed protein	Medtr4g143310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8382.1.A1_at	A	A1TS	POPTR_0005s05770	POPTR_0005s05770 (11)	scaffold_5:3764624-3765125(-) (11)	NA	NA	NA	AT1G54460.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.2	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8382.2.A1_s_at	A	A1TS	POPTR_0013s04010	POPTR_0013s04010 (9)	scaffold_13:2628605-2628952(-) (9)	NA	NA	NA	AT1G54460.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8386.2.S1_s_at	A	A1TS	POPTR_0017s01640	POPTR_0017s01640 (11)	scaffold_17:1174214-1174352(+) (11)//scaffold_96:56138-56276(-) (11)	NA	NA	NA	AT4G25670.2	"unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2). "	LOC_Os06g01770.2	expressed protein	Medtr1g126490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83863.1.S1_at	A	A1TS	POPTR_0001s02560	POPTR_0001s02560 (11)	scaffold_1:2044272-2048307(+) (11)	NA	P54638	Acetylornithine deacetylase	AT4G17830.1	Peptidase M20/M25/M40 family protein 	LOC_Os02g46520.1	"hydrolase, putative, expressed"	Medtr5g014590.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.83865.1.S1_at	A	A1TS	POPTR_0006s03060	POPTR_0006s03060 (9)	scaffold_6:1937674-1938254(+) (9)	NA	Q9M612	Nascent polypeptide-associated complex subunit alpha-like protein	AT3G12390.1	"Nascent polypeptide-associated complex (NAC), alpha subunit family protein "	LOC_Os01g71230.1	"nascent polypeptide-associated complex subunit alpha-like protein 3, putative, expressed"	Medtr7g105560.1	Ubiquitin-associated; Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83902.1.A1_at	A	A1TS	POPTR_0019s11940	POPTR_0019s11940 (10)	scaffold_19:13142597-13143667(+) (10)	NA	NA	NA	NA	NA	LOC_Os10g10180.1	"methyltransferase domain containing protein, putative, expressed"	Medtr4g109580.1	"CMV 1a interacting protein 1, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.83908.1.S1_s_at	A	A1TS	POPTR_0007s01450	POPTR_0007s01450 (11)	scaffold_7:818039-819233(+) (11)	NA	Q9STF9	Pentatricopeptide repeat-containing protein At3g46870	AT5G09320.1	Vacuolar sorting protein 9 (VPS9) domain 	LOC_Os07g36450.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g120590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83912.1.S1_s_at	A	A1TS	POPTR_0015s01240	POPTR_0015s01240 (11)	scaffold_15:779344-779824(+) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT5G24318.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os07g13580.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr1g008920.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.8394.1.S1_at	A	A1TS	POPTR_0001s22810	POPTR_0001s22810 (11)	scaffold_1:21695507-21695943(-) (11)	NA	O80327	Thaumatin-like protein 1	AT1G20030.2	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr7g124050.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8396.1.S1_at	A	A1MS	POPTR_0009s15370	POPTR_0009s15370 (11)	scaffold_9:11905321-11905785(-) (11)	NA	NA	NA	AT2G27180.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g104580.1	"pollen preferential protein^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83990.1.S1_at	A	A1TS	POPTR_0003s02330	POPTR_0003s02330 (9)	scaffold_3:2406601-2407015(+) (9)	NA	Q03795	Uncharacterized membrane protein YMR155W	AT1G80530.1	Major facilitator superfamily protein 	LOC_Os06g08110.1	"nodulin, putative, expressed"	Medtr8g122300.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83993.1.S1_at	A	A1TS	POPTR_0001s07460	POPTR_0001s07460 (11)	scaffold_1:5608024-5608344(-) (11)	NA	NA	NA	AT2G24530.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g56300.1	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84025.1.S1_at	A	A1TS	POPTR_0006s21950	POPTR_0006s21950 (11)	scaffold_6:20916748-20916871(-) (11)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8403.2.A1_a_at	A	A1TS	POPTR_0009s16720	POPTR_0009s16720 (11)	scaffold_9:12642982-12643960(+) (11)	NA	Q94743	Sorcin	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8403.4.S1_a_at	A	A1TS	POPTR_0004s21470	POPTR_0004s21470 (11)	scaffold_4:20589290-20589443(+) (11)	NA	Q94743	Sorcin	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8403.4.S1_at	A	A1TS	POPTR_0004s21470	POPTR_0004s21470 (11)	scaffold_4:20589431-20589645(+) (11)	NA	Q94743	Sorcin	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84033.1.S1_at	A	A1TS	POPTR_0015s14780	POPTR_0015s14780 (11)	scaffold_15:14257340-14257887(-) (11)	NA	Q8VXX5	Monocopper oxidase-like protein SKS1	AT4G25240.1	SKU5 similar 1 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr3g010000.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.84038.1.S1_at	A	A1TS	POPTR_0007s10840	POPTR_0007s10840 (11)	scaffold_7:11017007-11018119(+) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT5G67130.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os09g02729.1	"phospholipase C, putative, expressed"	Medtr5g016790.1	"Carbohydrate kinase, FGGY; Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84054.1.S1_at	A	A1MS	POPTR_0011s03060	POPTR_0011s03060 (9)	scaffold_11:3062298-3063739(+) (9)	NA	Q2V3H0	"Pentatricopeptide repeat-containing protein At4g18975, chloroplastic"	AT4G18975.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g36180.2	"pentatricopeptide, putative, expressed"	Medtr8g147600.1	Immunoglobulin/major histocompatibility complex 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84065.1.S1_at	A	A1TS	POPTR_0010s20720	POPTR_0010s20720 (11)	scaffold_10:18200995-18201271(-) (11)	NA	P49598	Protein phosphatase 2C 37	AT3G11410.1	protein phosphatase 2CA 	LOC_Os01g62760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84083.1.S1_at	A	A1TS	POPTR_0009s09350	POPTR_0009s09350 (11)	scaffold_9:8312610-8312701(+) (11)	NA	P37034	Uncharacterized transporter lpg1691	AT3G19553.1	Amino acid permease family protein 	LOC_Os03g37984.5	"amino acid permease family protein, putative, expressed"	Medtr5g005210.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84083.1.S1_s_at	A	A2TS	POPTR_0001s30330	POPTR_0009s09350 (11)//POPTR_0001s30330 (11)	scaffold_1:28844414-28844859(+) (11)//scaffold_9:8312156-8312601(+) (11)	NA	NA	NA	AT3G19553.1	Amino acid permease family protein 	LOC_Os03g37984.2	"amino acid permease family protein, putative, expressed"	Medtr5g005210.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8410.1.S1_at	A	A1MS	POPTR_0004s24400	POPTR_0004s24400 (11)	scaffold_4:23083709-23084097(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
PtpAffx.8410.2.A1_a_at	A	A1TS	POPTR_0004s24400	POPTR_0004s24400 (9)	scaffold_4:23083553-23084180(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
PtpAffx.84142.1.A1_at	A	A1TS	POPTR_0015s14350	POPTR_0015s14350 (11)	scaffold_15:13993461-13993899(+) (11)	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84159.1.A1_at	A	A1TS	POPTR_0008s14615	POPTR_0008s14615 (9)	scaffold_8:9704806-9707686(-) (9)	NA	P64956	Uncharacterized protein Mb2253c	AT1G24090.1	RNase H family protein 	LOC_Os08g08050.1	"retrotransposon protein, putative, unclassified"	Medtr2g120570.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	GO:0016234|inclusion body
PtpAffx.84165.1.A1_s_at	A	A1TS	POPTR_0014s18380	POPTR_0014s18380 (9)	scaffold_14:15484529-15485034(+) (11)	NA	Q9LN49	3-ketoacyl-CoA synthase 4	AT1G19440.1	3-ketoacyl-CoA synthase 4 	LOC_Os05g49290.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr4g095830.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.84166.1.A1_at	A	A1TS	POPTR_0008s15860	POPTR_0008s15860 (11)	scaffold_8:10577187-10577737(-) (11)	NA	Q9XGW1	Protein PINHEAD	AT5G43810.2	Stabilizer of iron transporter SufD / Polynucleotidyl transferase 	LOC_Os06g39640.1	"PINHEAD, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84176.1.A1_s_at	A	A1TS	POPTR_0008s12050	POPTR_0008s12050 (11)	scaffold_8:7771506-7772025(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT1G13410.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g38880.1	"tetratricopeptide-like helical, putative, expressed"	Medtr8g077580.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8418.1.A1_at	A	A1TS	POPTR_0007s12280	POPTR_0007s12280 (11)	scaffold_7:12598197-12598590(-) (11)	NA	Q09463	RING finger protein 5	AT2G23780.1	RING/U-box superfamily protein 	LOC_Os12g43930.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84194.1.A1_s_at	A	A1TS	POPTR_0004s16580	POPTR_0004s16580 (11)	scaffold_4:17017043-17017674(+) (11)	NA	NA	NA	AT4G39140.5	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8421.1.S1_at	A	A1MS	POPTR_0002s19760	POPTR_0002s19760 (9)	scaffold_2:15685569-15685781(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8421.2.S1_a_at	A	A1TS	POPTR_0002s19760	POPTR_0002s19760 (11)	scaffold_2:15685294-15686027(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8421.4.S1_a_at	A	A1TS	POPTR_0002s19760	POPTR_0002s19760 (11)	scaffold_2:15685477-15686083(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84271.1.S1_at	A	A1TS	POPTR_0002s09960	POPTR_0002s09960 (11)	scaffold_2:7151178-7155264(+) (11)	NA	Q9M9E8	F-box protein At1g78280	AT1G78280.1	"transferases, transferring glycosyl groups "	LOC_Os03g27250.1	"OsFBO14 - F-box and other domain containing protein, expressed"	Medtr3g150440.1	"Transcription factor jumonji, jmjC; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84272.1.A1_at	A	A1MS	POPTR_0009s07910	POPTR_0009s07910 (9)	scaffold_9:7327797-7327997(+) (9)	NA	O65020	Ethylene-overproduction protein 1	AT3G51770.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os03g18360.1	"BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr4g012110.1	"Ethylene-overproduction protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8428.1.S1_at	A	A1TS	POPTR_0016s07230	POPTR_0016s07230 (11)	scaffold_16:5036917-5037381(+) (11)	NA	Q9C615	Putative syntaxin-24	AT2G35980.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os04g58850.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr8g139130.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.84285.1.A1_at	A	A1TS	POPTR_0006s23720	POPTR_0006s23720 (11)	scaffold_6:22430628-22431835(-) (11)	NA	Q8NEE6	F-box/LRR-repeat protein 13	AT2G06040.1	"CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). "	LOC_Os08g35700.1	"Leucine Rich Repeat family protein, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.84333.1.A1_at	A	A1TS	POPTR_0018s09310	POPTR_0018s09310 (9)	scaffold_18:10188327-10188590(+) (9)	NA	Q5R7R9	SNW domain-containing protein 1	AT1G77180.2	chromatin protein family 	LOC_Os02g52250.1	"SKIP/SNW domain containing protein, expressed"	Medtr2g129890.1	SKIP/SNW 	"GO:0044260|cellular macromolecule metabolic process||GO:0000398|""nuclear mRNA splicing, via spliceosome"""	GO:0005515|protein binding	GO:0005681|spliceosomal complex
PtpAffx.8434.1.A1_at	A	A1TS	POPTR_0018s09450	POPTR_0018s09450 (11)	scaffold_18:10342909-10343874(-) (11)	NA	NA	NA	AT4G15450.1	Senescence/dehydration-associated protein-related 	LOC_Os01g52480.1	"senescence-associated protein, putative, expressed"	Medtr4g159850.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8435.1.S1_at	A	A1TS	POPTR_0001s40080	POPTR_0001s40080 (11)	scaffold_1:39395565-39395931(+) (11)	POPTR_0011s11070 (7)	Q93VI8	Tubby-like F-box protein 7	AT1G53320.1	tubby like protein 7 	LOC_Os05g43850.1	"OsFBT9 - F-box and tubby domain containing protein, expressed"	Medtr2g091950.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84358.1.A1_at	A	A1TA	POPTR_0014s14790	POPTR_0014s14790 (11)	scaffold_14:10863051-10863279(+) (11)	NA	P19892	Ras-related protein ARA-1	AT2G31680.1	RAB GTPase homolog A5D 	LOC_Os08g41340.1	"ras-related protein, putative, expressed"	Medtr7g046180.1	"Ras-related protein ARA-1, putative "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.84414.1.S1_s_at	A	A1TS	POPTR_0001s12940	POPTR_0001s12940 (11)	scaffold_1:10033525-10034485(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT1G27440.1	Exostosin family protein 	LOC_Os01g70200.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.84417.1.S1_at	A	A1TS	POPTR_0004s11850	POPTR_0004s11850 (10)	scaffold_4:10700284-10700794(-) (10)	NA	Q9FL82	F-box protein At5g39250	AT5G39250.1	F-box family protein 	LOC_Os03g30920.1	"OsFBX95 - F-box domain containing protein, expressed"	Medtr7g012380.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84419.1.S1_at	A	A1TS	POPTR_0006s12100	POPTR_0006s12100 (11)	scaffold_6:9253930-9254736(+) (11)	NA	NA	NA	AT2G27930.1	PLATZ transcription factor family protein 	LOC_Os02g46610.1	"zinc-binding protein, putative, expressed"	Medtr1g074250.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.84436.1.S1_at	A	A1TS	POPTR_0004s14360	POPTR_0004s14360 (11)	scaffold_129:28997-30035(-) (11)//scaffold_4:14815202-14816232(+) (11)	POPTR_0129s00220 (6)	NA	NA	NA	NA	NA	NA	Medtr7g035200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84439.1.A1_at	A	A1TS	POPTR_0016s08840	POPTR_0016s08840 (11)	scaffold_16:6650015-6650859(+) (11)	NA	NA	NA	AT5G03120.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g121060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84458.1.A1_at	A	A1TS	POPTR_0018s13290	POPTR_0018s13290 (11)	scaffold_18:13668632-13670486(+) (11)	POPTR_0006s07090 (7)	NA	NA	AT5G20590.1	TRICHOME BIREFRINGENCE-LIKE 5 	LOC_Os06g44900.1	"leaf senescence related protein, putative, expressed"	Medtr8g130160.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84459.1.A1_at	A	A1TS	POPTR_0016s05490	POPTR_0016s05490 (11)	scaffold_16:3416638-3417482(+) (11)	NA	Q6NLQ6	Calcium-dependent protein kinase 32	AT3G57530.1	calcium-dependent protein kinase 32 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.8448.1.S1_at	A	A1TS	POPTR_0015s10920	POPTR_0015s10920 (11)	scaffold_15:11667378-11667881(-) (11)	NA	P27818	"Acetolactate synthase 1, chloroplastic"	AT3G48560.1	chlorsulfuron/imidazolinone resistant 1 	LOC_Os02g30630.2	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr2g014800.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.8448.2.S1_a_at	A	A2TS	POPTR_0012s10030	POPTR_0012s10030 (11)//POPTR_0015s10920 (11)	scaffold_12:10903557-10903729(-) (11)//scaffold_15:11669070-11669242(-) (11)	NA	P09114	"Acetolactate synthase 2, chloroplastic"	AT3G48560.1	chlorsulfuron/imidazolinone resistant 1 	LOC_Os02g30630.2	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr2g014800.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.8448.2.S1_at	A	A1TS	POPTR_0012s10030	POPTR_0012s10030 (10)	scaffold_12:10903515-10903896(-) (10)	NA	P09114	"Acetolactate synthase 2, chloroplastic"	AT3G48560.1	chlorsulfuron/imidazolinone resistant 1 	LOC_Os02g30630.2	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr2g014800.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.8448.3.A1_a_at	A	A2TS	POPTR_0012s10030	POPTR_0012s10030 (11)//POPTR_0015s10920 (11)	scaffold_12:10902170-10902461(-) (11)//scaffold_15:11667683-11667974(-) (11)	NA	P09114	"Acetolactate synthase 2, chloroplastic"	AT3G48560.1	chlorsulfuron/imidazolinone resistant 1 	LOC_Os02g30630.2	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr2g014800.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.8448.3.A1_at	A	A1TS	POPTR_0012s10030	POPTR_0012s10030 (11)	scaffold_12:10902027-10902566(-) (11)	NA	P09114	"Acetolactate synthase 2, chloroplastic"	AT3G48560.1	chlorsulfuron/imidazolinone resistant 1 	LOC_Os02g30630.2	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr2g014800.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.84481.1.A1_at	A	A1TA	POPTR_0004s01810	POPTR_0004s01810 (9)	scaffold_4:1088521-1092457(-) (10)	NA	Q9LQQ8	Probable serine/threonine-protein kinase RLCKVII	AT3G20530.1	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr5g099440.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.84497.1.S1_s_at	A	A1TS	POPTR_0016s05320	POPTR_0016s05320 (11)	scaffold_16:3276779-3277512(+) (11)	NA	Q54D08	Protein LST8 homolog	AT3G18140.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g47780.1	"WD repeat-containing protein, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84508.1.S1_a_at	A	A1TS	POPTR_0002s07980	POPTR_0002s07980 (11)	scaffold_2:5525473-5525574(-) (11)//scaffold_2:5540746-5540847(-) (11)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84508.1.S1_at	A	A1TS	POPTR_0002s07980	POPTR_0002s07980 (10)	scaffold_2:5521849-5525647(-) (10)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84508.2.S1_at	A	A1MS	POPTR_0002s07980	POPTR_0002s07980 (11)	scaffold_2:5525321-5525487(-) (11)//scaffold_2:5540594-5540760(-) (11)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84537.1.S1_s_at	A	A2TS	POPTR_0021s00810	POPTR_0021s00820 (11)//POPTR_0021s00810 (11)	scaffold_21:467473-475011(+) (11)//scaffold_21:488452-488941(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G21690.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr5g034470.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.8454.1.S1_a_at	A	A1TS	POPTR_0017s11770	POPTR_0017s11770 (10)	scaffold_17:11620516-11620760(+) (10)	NA	NA	NA	AT1G14340.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g54870.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g040130.1	"Aldo/keto reductase; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.8454.4.S1_at	A	A2MS	POPTR_0017s11770	POPTR_0017s11770 (11)//POPTR_0017s11780 (10)	scaffold_17:11618615-11618887(+) (11)//scaffold_17:11631526-11631799(+) (10)	NA	NA	NA	AT1G14340.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g54870.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g040130.1	"Aldo/keto reductase; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.84556.1.S1_at	A	A1TS	POPTR_0013s11370	POPTR_0013s11370 (11)	scaffold_13:12048702-12048838(+) (11)	NA	P48769	Deoxycytidine kinase	AT1G72040.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g65350.1	"deoxynucleoside kinase family, putative, expressed"	Medtr3g012840.1	Deoxynucleoside kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0005524|ATP binding||GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.8459.2.S1_a_at	A	A2TS	POPTR_0001s08080	POPTR_0001s08080 (11)//POPTR_0003s11610 (11)	scaffold_1:6145380-6146903(+) (11)//scaffold_3:12396653-12398117(+) (11)	NA	Q84W04	Protein cornichon homolog 4	AT1G12390.1	Cornichon family protein 	LOC_Os06g04500.1	"cornichon protein, putative, expressed"	Medtr8g106610.1	Cornichon 	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	GO:0016020|membrane
PtpAffx.84598.1.S1_at	A	A1TS	POPTR_0014s02980	POPTR_0014s02980 (11)	scaffold_14:2449342-2449914(-) (11)	NA	O15488	Glycogenin-2	AT4G33330.2	plant glycogenin-like starch initiation protein 3 	LOC_Os03g08600.1	"glycosyl transferase, putative, expressed"	Medtr1g024490.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.8460.2.A1_at	A	A1MS	POPTR_0002s13940	POPTR_0002s13940 (10)	scaffold_2:10341088-10341418(+) (10)	NA	O23676	Protein mago nashi homolog	AT1G02140.1	mago nashi family protein 	LOC_Os12g18880.1	"mago nashi, putative, expressed"	Medtr3g163680.1	Mago nashi protein 	NA	NA	GO:0005634|nucleus
PtpAffx.84646.1.S1_at	A	A1TS	POPTR_0001s08970	POPTR_0001s08970 (11)	scaffold_1:6869031-6869482(-) (11)	NA	Q43111	Pectinesterase 3	AT3G47670.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os09g26360.1	"pectinesterase, putative, expressed"	Medtr8g026630.1	Pectinesterase; Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.8465.1.S1_at	A	A2TS	POPTR_0003s11310	POPTR_0003s11310 (10)//POPTR_0003s20640 (10)	scaffold_3:12161516-12161995(-) (11)//scaffold_3:19116915-19117351(-) (10)	NA	P17407	21 kDa protein	AT1G62760.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.8468.1.S1_at	A	A1TS	POPTR_0008s21180	POPTR_0008s21180 (11)	scaffold_8:15347398-15348999(-) (11)	NA	Q9LRN8	"50S ribosomal protein L3-2, chloroplastic"	AT3G17465.1	ribosomal protein L3 plastid 	LOC_Os01g14830.1	"ribosomal protein L3, putative, expressed"	Medtr6g006510.1	Ribosomal protein L3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.8468.2.S1_at	A	A1TS	POPTR_0010s00470	POPTR_0010s00470 (11)	scaffold_10:235363-235662(-) (11)	NA	Q9LRN8	"50S ribosomal protein L3-2, chloroplastic"	AT3G17465.1	ribosomal protein L3 plastid 	LOC_Os01g14830.1	"ribosomal protein L3, putative, expressed"	Medtr6g006510.1	Ribosomal protein L3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.84688.1.S1_at	A	A1TS	POPTR_0018s03780	POPTR_0018s03780 (11)	scaffold_18:3249641-3249963(-) (11)	NA	NA	NA	AT5G24860.1	flowering promoting factor 1 	LOC_Os01g15340.1	"flowering promoting factor-like 1, putative, expressed"	Medtr8g138840.1	"flowering promoting factor-like 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84715.1.S1_at	A	A1MS	POPTR_0001s01400	POPTR_0001s01400 (11)	scaffold_1:1043933-1044326(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84717.1.S1_at	A	A1TS	POPTR_0003s22100	POPTR_0003s22100 (11)	scaffold_3:20037418-20037811(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT5G12890.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g42690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr2g117970.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84718.1.S1_s_at	A	A2TS	POPTR_0018s10320	POPTR_0018s10320 (11)//POPTR_0018s10330 (11)	scaffold_18:11253950-11254568(+) (11)//scaffold_18:11260060-11260677(+) (11)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.84732.1.S1_s_at	A	A1TS	POPTR_0016s10140	POPTR_0016s10140 (11)	scaffold_16:8315378-8315617(+) (11)	NA	NA	NA	AT3G53980.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g33920.1	"LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84734.1.S1_a_at	A	A1TS	POPTR_0001s44090	POPTR_0001s44090 (11)	scaffold_1:44554060-44555374(-) (11)	NA	Q69VG1	Chitin-inducible gibberellin-responsive protein 1	AT5G48150.2	GRAS family transcription factor 	LOC_Os07g36170.2	"chitin-inducible gibberellin-responsive protein, putative, expressed"	Medtr2g096350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84734.2.S1_at	A	A1TS	POPTR_0001s44090	POPTR_0001s44090 (10)	scaffold_1:44553445-44553893(-) (10)	NA	Q69VG1	Chitin-inducible gibberellin-responsive protein 1	AT5G48150.2	GRAS family transcription factor 	LOC_Os07g36170.2	"chitin-inducible gibberellin-responsive protein, putative, expressed"	Medtr2g096350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84780.1.S1_s_at	A	A1TS	POPTR_0002s00570	POPTR_0002s00570 (11)	scaffold_2:239642-240080(-) (11)	NA	P29057	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g094670.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
PtpAffx.84795.1.A1_at	A	A1TS	POPTR_0009s04970	POPTR_0009s04970 (10)	scaffold_9:5191595-5192111(+) (10)	NA	P95245	Phospholipase C 3	AT1G07230.1	non-specific phospholipase C1 	LOC_Os03g61130.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.84833.1.S1_at	A	A1TS	POPTR_0013s03740	POPTR_0013s03740 (11)	scaffold_13:2391062-2391673(-) (11)	POPTR_0013s03750 (6)	P40691	Auxin-induced protein PCNT115	AT1G60710.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g28320.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g140850.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.849.1.A1_a_at	A	A1TS	POPTR_0010s25800	POPTR_0010s25800 (11)	scaffold_10:21299651-21299773(+) (11)	NA	Q96499	60S ribosomal protein L44	AT4G14320.1	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.849.2.A1_x_at	A	A1TS	POPTR_0010s25800	POPTR_0010s25800 (11)	scaffold_10:21299183-21299773(+) (11)	NA	Q96499	60S ribosomal protein L44	AT4G14320.1	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.849.4.A1_at	A	A1MS	POPTR_0010s25800	POPTR_0010s25800 (11)	scaffold_10:21299311-21299601(+) (11)	NA	Q96499	60S ribosomal protein L44	AT4G14320.1	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.84908.1.A1_s_at	A	A1TS	POPTR_0006s04970	POPTR_0006s04970 (11)	scaffold_6:3469294-3470157(-) (11)	NA	Q96B26	Exosome complex exonuclease RRP43	AT1G60080.1	3'-5'-exoribonuclease family protein 	LOC_Os11g20689.1	"exosome complex exonuclease, putative, expressed"	Medtr1g008100.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.84936.1.A1_at	A	A1TS	POPTR_0002s09050	POPTR_0002s09050 (11)	scaffold_2:6412144-6412350(+) (11)	NA	Q84WU6	Auxin response factor 17	AT1G77850.1	auxin response factor 17 	LOC_Os10g33940.1	"auxin response factor 18, putative, expressed"	Medtr5g044210.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.84964.1.A1_at	A	A1TS	POPTR_0001s36070	POPTR_0001s36070 (11)	scaffold_1:34540583-34541195(-) (11)	NA	Q8N5M1	ATP synthase mitochondrial F1 complex assembly factor 2	AT5G40660.1	ATP12 protein-related 	LOC_Os07g44940.1	"ATP12 ATPase, putative, expressed"	NA	NA	GO:0043461|proton-transporting ATP synthase complex assembly	GO:0005515|protein binding	NA
PtpAffx.84967.1.A1_at	A	A1TS	POPTR_0002s09860	POPTR_0002s09860 (11)	scaffold_2:7075926-7076441(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84979.1.S1_at	A	A1TS	POPTR_0003s21610	POPTR_0003s21610 (11)	scaffold_3:19705280-19705716(-) (11)	NA	Q9LEH3	Peroxidase 15	AT4G08780.1	Peroxidase superfamily protein 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	AC234842_16.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 64674-62215 E EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.84989.1.S1_s_at	A	A1TS	POPTR_0010s05600	POPTR_0010s05600 (11)	scaffold_10:7041943-7042812(+) (11)	NA	Q8RY46	"ABC transporter B family member 26, chloroplastic"	AT1G70610.1	transporter associated with antigen processing protein 1 	LOC_Os01g68330.1	"antigen peptide transporter-like 1, chloroplast precursor, putative, expressed"	Medtr5g034450.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.850.1.S1_at	A	A1TS	POPTR_0010s12560	POPTR_0010s12560 (11)	scaffold_10:12566191-12566714(+) (11)	NA	Q9ZU38	Probable ribose-5-phosphate isomerase	AT2G01290.1	ribose-5-phosphate isomerase 2 	LOC_Os07g08030.1	"ribose-5-phosphate isomerase A, putative, expressed"	Medtr1g137480.1	Ribose 5-phosphate isomerase 	"GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0009052|""pentose-phosphate shunt, non-oxidative branch"""	GO:0004751|ribose-5-phosphate isomerase activity	NA
PtpAffx.850.2.S1_at	A	A1TS	POPTR_0008s12650	POPTR_0008s12650 (11)	scaffold_8:8181589-8182099(-) (11)	NA	Q9ZU38	Probable ribose-5-phosphate isomerase	AT2G01290.1	ribose-5-phosphate isomerase 2 	LOC_Os07g08030.1	"ribose-5-phosphate isomerase A, putative, expressed"	Medtr1g137480.1	Ribose 5-phosphate isomerase 	"GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0009052|""pentose-phosphate shunt, non-oxidative branch"""	GO:0004751|ribose-5-phosphate isomerase activity	NA
PtpAffx.85024.1.A1_at	A	A1MS	POPTR_0009s03980	POPTR_0009s03980 (9)	scaffold_9:4552134-4553315(+) (9)	NA	Q9ZW06	Pumilio homolog 2	AT2G29190.2	pumilio 2 	LOC_Os01g62650.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr4g084270.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.85031.1.A1_at	A	A1TS	POPTR_0006s09670	POPTR_0006s09670 (11)	scaffold_6:7107862-7108324(+) (11)	NA	Q5ZHZ4	E3 ubiquitin-protein ligase Hakai	AT5G01160.1	RING/U-box superfamily protein 	LOC_Os10g35190.1	"ZOS10-06 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.85079.1.S1_at	A	A1TS	POPTR_0003s09530	POPTR_0003s09530 (11)	scaffold_3:10845734-10846022(+) (11)	NA	NA	NA	AT1G32230.1	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85081.1.A1_s_at	A	A1TS	POPTR_0001s18230	POPTR_0001s18230 (11)	scaffold_1:15303645-15304062(+) (11)	NA	Q08DK7	Mitochondrial carnitine/acylcarnitine carrier protein CACL	AT1G79900.1	Mitochondrial substrate carrier family protein 	LOC_Os01g12520.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85112.1.S1_s_at	A	A1TS	POPTR_0012s03630	POPTR_0012s03630 (11)	scaffold_12:2852624-2855187(+) (11)	NA	Q10251	Eukaryotic translation initiation factor 5B	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein 	LOC_Os05g51500.1	"eukaryotic translation initiation factor 5B, putative, expressed"	Medtr1g125430.1	Small GTP-binding protein domain; Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.85113.1.A1_at	A	A1TS	POPTR_0005s12930	POPTR_0005s12930 (9)	scaffold_5:9781686-9782196(+) (10)	NA	Q8L3R2	Probable calcium-binding protein CML41	AT3G50770.1	calmodulin-like 41 	LOC_Os03g55960.1	"EF hand family protein, putative, expressed"	Medtr8g093890.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85149.1.S1_at	A	A1TS	POPTR_0013s01390	POPTR_0013s01390 (10)	scaffold_13:797903-800810(-) (10)	NA	NA	NA	AT3G05625.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g24090.1	"TPR repeat, putative, expressed"	Medtr1g100070.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85164.1.S1_at	A	A1TS	POPTR_0425s00200	POPTR_0425s00200 (11)	scaffold_425:13179-14247(+) (11)//scaffold_5:13371601-13371810(-) (9)	POPTR_0005s16520 (7)	NA	NA	AT1G22140.1	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g26791.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85178.1.S1_at	A	A1TS	POPTR_0006s15500	POPTR_0006s15500 (10)	scaffold_6:12910834-12912596(-) (10)	NA	NA	NA	AT4G29590.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g51530.1	"methyltransferase domain containing protein, expressed"	Medtr6g092570.1	"methyltransferase, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.85208.1.S1_at	A	A1TS	POPTR_0014s02990	POPTR_0014s02990 (10)	scaffold_14:2453222-2455858(-) (10)	NA	NA	NA	AT4G33350.1	Tic22-like family protein 	LOC_Os06g11020.1	"tic22-like family domain containing protein, expressed"	Medtr3g147870.1	Tic22-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85209.1.S1_at	A	A1TS	POPTR_0001s36690	POPTR_0001s36690 (10)	scaffold_1:35391176-35391685(+) (10)	NA	Q12872	"Splicing factor, arginine/serine-rich 8"	AT5G55100.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 	LOC_Os01g50320.1	"surp module family protein, putative, expressed"	Medtr5g100990.1	SWAP/Surp 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.8521.1.S1_a_at	A	A1TS	POPTR_0008s15110	POPTR_0008s15110 (11)	scaffold_8:10097352-10097719(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT2G32150.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g49440.1	"phosphatase, putative, expressed"	Medtr1g132580.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.8521.2.S1_a_at	A	A2TS	POPTR_0008s15110	POPTR_0010s09950 (11)//POPTR_0008s15110 (11)	scaffold_10:10552718-10553008(+) (11)//scaffold_8:10098280-10098569(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT2G32150.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g49440.1	"phosphatase, putative, expressed"	Medtr1g132580.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.8521.4.S1_at	A	A1TS	POPTR_0019s09370	POPTR_0019s09370 (11)	scaffold_19:10931039-10932836(+) (11)	NA	A7RK30	Quinone oxidoreductase-like protein 2 homolog	AT3G56460.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os05g24880.1	"dehydrogenase, putative, expressed"	Medtr2g014170.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.8523.1.S1_at	A	A1TS	POPTR_0001s04100	POPTR_0001s04100 (11)	scaffold_1:3233725-3233935(+) (11)	NA	NA	NA	AT1G55360.1	Protein of Unknown Function (DUF239) 	LOC_Os07g38590.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8523.2.S1_a_at	A	A2TS	POPTR_0001s04100	POPTR_0003s20980 (11)//POPTR_0001s04100 (11)	scaffold_1:3231012-3231923(+) (11)//scaffold_3:19309040-19309975(+) (11)	NA	NA	NA	AT1G55360.1	Protein of Unknown Function (DUF239) 	LOC_Os07g38590.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8523.2.S1_at	A	A1TS	POPTR_0003s20980	POPTR_0003s20980 (11)	scaffold_3:19308787-19309831(+) (11)	NA	NA	NA	AT1G55360.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8523.4.A1_a_at	A	A1TS	POPTR_0010s04370	POPTR_0010s04370 (11)	scaffold_10:5450883-5450970(+) (11)	NA	Q8RX77	Nitrate transporter 1.7	AT1G69870.1	nitrate transporter 1.7 	LOC_Os01g68510.1	"peptide transporter PTR2, putative, expressed"	Medtr5g039070.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.8523.4.A1_at	A	A1TA	POPTR_0001s04100	POPTR_0001s04100 (10)	scaffold_1:3233609-3233862(-) (10)	NA	NA	NA	AT1G55360.1	Protein of Unknown Function (DUF239) 	LOC_Os07g38590.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8523.5.A1_at	A	A1TA	POPTR_0010s04370	POPTR_0010s04370 (11)	scaffold_10:5450220-5450481(-) (11)	NA	Q8RX77	Nitrate transporter 1.7	AT1G69870.1	nitrate transporter 1.7 	LOC_Os01g68510.1	"peptide transporter PTR2, putative, expressed"	Medtr5g039070.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.85250.1.A1_at	A	A1TS	POPTR_0001s08300	POPTR_0001s08300 (11)	scaffold_1:6324268-6324826(-) (11)	NA	Q6ICL7	Solute carrier family 35 member E4	AT1G12500.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr8g106450.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.85250.2.S1_s_at	A	A1MS	POPTR_0003s11790	POPTR_0003s11790 (11)	scaffold_3:12556204-12556746(-) (11)	NA	Q5RKL7	Solute carrier family 35 member E4	AT1G12500.1	Nucleotide-sugar transporter family protein 	LOC_Os03g17740.1	"transporter, putative, expressed"	Medtr8g106450.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.8526.1.A1_at	A	A1TS	POPTR_0014s09760	POPTR_0014s09760 (11)	scaffold_14:7279402-7279496(-) (11)	NA	P11402	"ATP synthase delta chain, chloroplastic"	AT4G09650.1	ATP synthase delta-subunit gene 	LOC_Os02g51470.3	"ATP synthase F1, delta subunit family protein, putative, expressed"	Medtr7g145730.1	hypothetical protein 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)""||GO:0005886|plasma membrane"
PtpAffx.8526.1.A1_s_at	A	A1TS	POPTR_0014s09760	POPTR_0014s09760 (11)	scaffold_14:7279090-7279374(-) (11)	NA	P11402	"ATP synthase delta chain, chloroplastic"	AT4G09650.1	ATP synthase delta-subunit gene 	LOC_Os02g51470.3	"ATP synthase F1, delta subunit family protein, putative, expressed"	Medtr7g145730.1	hypothetical protein 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)""||GO:0005886|plasma membrane"
PtpAffx.85269.1.S1_s_at	A	A1TS	POPTR_0001s38230	POPTR_0001s38230 (9)	scaffold_1:37310827-37311235(-) (9)	NA	NA	NA	AT3G18380.1	sequence-specific DNA binding transcription factors;sequence-specific DNA binding 	LOC_Os06g29020.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g114620.1	Homeobox 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85312.1.S1_at	A	A1TS	POPTR_0001s28890	POPTR_0001s28890 (10)	scaffold_1:27650403-27650889(+) (10)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G30140.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g080970.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85318.1.S1_at	A	A1TS	POPTR_0004s05200	POPTR_0004s05200 (11)	scaffold_4:3949202-3951835(+) (11)	NA	Q5RBD4	Probable ATP-dependent RNA helicase DHX35	AT4G18465.1	RNA helicase family protein 	LOC_Os01g11370.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr2g018740.1	"Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.85335.1.A1_at	A	A1TS	POPTR_0006s26510	POPTR_0006s26510 (10)	scaffold_6:24714637-24716186(-) (10)	NA	NA	NA	AT2G25605.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 75 Blast hits to 75 proteins in 20 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). 	LOC_Os05g49910.1	expressed protein	Medtr3g136330.1	"NADH-ubiquinone oxidoreductase, chain 49kDa "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8534.1.S1_s_at	A	A1TS	POPTR_0013s00850	POPTR_0013s00850 (11)	scaffold_13:430651-431110(-) (11)	NA	NA	NA	AT1G56580.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85349.1.S1_at	A	A1TS	POPTR_0010s00910	POPTR_0010s00910 (10)	scaffold_10:636545-636877(-) (10)	NA	Q80ZX8	Sperm-associated antigen 1	AT3G16760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g22140.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g065330.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8535.1.S1_at	A	A1TS	POPTR_0008s07660	POPTR_0008s07660 (11)	scaffold_8:4691495-4691976(-) (11)	NA	O80813	Ycf20-like protein	AT1G65420.1	Protein of unknown function (DUF565) 	LOC_Os09g11520.1	"DUF565 domain containing protein, putative, expressed"	Medtr4g121120.1	Protein of unknown function DUF565 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85387.1.S1_at	A	A1TS	POPTR_0014s01930	POPTR_0014s01930 (11)	scaffold_14:1742226-1743096(+) (11)	NA	NA	NA	AT1G27700.1	Syntaxin/t-SNARE family protein 	LOC_Os10g20240.1	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr1g023580.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.8539.1.S1_s_at	A	A3TS	POPTR_0002s14840	POPTR_0192s00240 (11)//POPTR_0192s00250 (11)//POPTR_0002s14840 (11)	scaffold_192:32255-32529(-) (11)//scaffold_192:35847-36117(-) (11)//scaffold_2:10995424-10995694(+) (11)	NA	P51106	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g44260.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081220.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.8541.1.S1_at	A	A1TS	POPTR_0004s05580	POPTR_0004s05580 (11)	scaffold_4:4313246-4313738(-) (11)	NA	P68350	Dof zinc finger protein DOF1.5	AT1G29160.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os10g26620.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g111860.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.8544.1.S1_at	A	A1TS	POPTR_0001s13940	POPTR_0001s13940 (11)	scaffold_1:10985189-10985454(-) (11)	NA	Q9FYF7	REF/SRPP-like protein At1g67360	AT1G67360.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr3g103750.2	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85451.1.S1_s_at	A	A1TS	POPTR_0001s36290	POPTR_0001s36290 (11)	scaffold_1:34840069-34841112(+) (11)	NA	P25861	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT3G04120.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.85451.2.S1_at	A	A1MS	POPTR_0001s36290	POPTR_0001s36290 (11)	scaffold_1:34841200-34841261(+) (11)	NA	P25861	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT3G04120.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.85471.1.S1_at	A	A1TS	POPTR_0010s09600	POPTR_0010s09600 (11)	scaffold_10:10356240-10356781(+) (11)	NA	NA	NA	AT3G22540.1	Protein of unknown function (DUF1677) 	LOC_Os03g46300.1	conserved hypothetical protein	Medtr5g006550.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85479.1.S1_s_at	A	A1MS	POPTR_0002s10930	POPTR_0002s10930 (10)	scaffold_2:7984116-7984209(+) (10)	NA	NA	NA	AT2G17280.2	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g121830.1	"phosphoglycerate mutase-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8549.1.S1_s_at	A	A1TS	POPTR_0012s07660	POPTR_0012s07660 (11)	scaffold_12:8578786-8579004(+) (11)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8550.1.A1_x_at	A	A1TS	POPTR_0019s04670	POPTR_0019s04670 (11)	scaffold_19:4853320-4854196(+) (11)	POPTR_0019s04660 (6)	P80595	Apyrase	AT5G18280.1	apyrase 2 	LOC_Os03g21120.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.8550.3.S1_a_at	A	A2TS	POPTR_0019s04670	POPTR_0019s04670 (11)//POPTR_0019s04660 (10)	scaffold_19:4837459-4838022(+) (10)//scaffold_19:4853258-4854021(+) (11)	NA	P80595	Apyrase	AT5G18280.1	apyrase 2 	LOC_Os03g21120.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.8551.1.A1_at	A	A1TS	POPTR_0010s13330	POPTR_0010s13330 (11)	scaffold_10:13178787-13180149(+) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.85524.1.S1_s_at	A	A1TS	POPTR_0010s08560	POPTR_0010s08560 (11)	scaffold_10:9479016-9479373(-) (11)	NA	Q8VYR4	Cellulose synthase-like protein G2	AT4G24000.1	cellulose synthase like G2 	LOC_Os09g30130.1	"CSLE6 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.85533.1.S1_at	A	A1TS	POPTR_0011s07010	POPTR_0011s07010 (10)	scaffold_11:7773300-7773732(+) (10)	NA	NA	NA	AT2G42760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). 	LOC_Os06g35770.1	expressed protein	Medtr4g135240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85534.1.S1_at	A	A1TS	POPTR_0007s01750	POPTR_0007s01750 (9)	scaffold_7:1014964-1016778(+) (9)	NA	Q9LND7	F-box protein SKIP16	AT1G06110.1	SKP1/ASK-interacting protein 16 	LOC_Os11g16390.1	expressed protein	Medtr4g092470.1	Cyclin-like F-box; ApaG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85563.1.S1_at	A	A1TS	POPTR_0019s08940	POPTR_0019s08940 (11)	scaffold_19:10506579-10506770(+) (11)	NA	Q3THJ3	Probable RNA-binding protein EIF1AD	AT2G40780.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os03g02310.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.85569.1.S1_at	A	A1TS	POPTR_0001s46340	POPTR_0001s46340 (11)	scaffold_1:46758813-46759141(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20800.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr4g125010.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.85571.1.S1_s_at	A	A1TS	POPTR_0001s17990	POPTR_0001s17990 (11)	scaffold_1:14969291-14969702(-) (11)	NA	NA	NA	AT5G11460.1	Protein of unknown function (DUF581) 	LOC_Os01g08520.1	"DUF581 domain containing protein, expressed"	AC234703_11.1	Protein of unknown function DUF581 AC234703.1 65311-68302 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85571.2.A1_s_at	A	A1TS	POPTR_0001s17990	POPTR_0001s17990 (11)	scaffold_1:14970072-14970491(-) (11)	NA	NA	NA	AT5G11460.1	Protein of unknown function (DUF581) 	LOC_Os01g08520.1	"DUF581 domain containing protein, expressed"	AC234703_11.1	Protein of unknown function DUF581 AC234703.1 65311-68302 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85580.1.S1_s_at	A	A1TS	POPTR_0006s12640	POPTR_0006s12640 (11)	scaffold_6:9790525-9791757(-) (11)	NA	Q9HLX5	Histidyl-tRNA synthetase	AT3G46100.1	Histidyl-tRNA synthetase 1 	LOC_Os02g51830.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr7g123930.1	Histidyl-tRNA synthetase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.85585.1.S1_at	A	A1TS	POPTR_0016s15090	POPTR_0016s15090 (10)	scaffold_16:14124222-14125723(-) (10)	NA	Q9CWR2	SET and MYND domain-containing protein 3	AT1G33400.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g36250.1	"tetratricopeptide repeat, putative, expressed"	Medtr3g121910.1	"tetratricopeptide repeat, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85599.1.S1_at	A	A1TS	POPTR_0005s27650	POPTR_0005s27650 (11)	scaffold_5:25207355-25209216(+) (11)	NA	NA	NA	AT1G76405.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20816.1); Has 52 Blast hits to 52 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g58550.2	"chloroplast channel forming outer membrane protein, putative, expressed"	Medtr3g159980.1	"chloroplast channel forming outer membrane protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8562.1.S1_at	A	A1TS	POPTR_0016s03840	POPTR_0016s03840 (11)	scaffold_16:2144118-2144535(-) (11)	NA	Q6CFJ0	Mitochondria fission 1 protein	AT3G57090.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g31770.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr7g107260.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85649.1.S1_at	A	A1TS	POPTR_0003s08190	POPTR_0003s08190 (11)	scaffold_3:9595394-9596976(+) (11)	NA	P75713	Uncharacterized protein ylbA	AT4G17050.1	ureidoglycine aminohydrolase 	LOC_Os07g31270.1	"cupin 2, conserved barrel domain protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85674.1.S1_a_at	A	A1TS	POPTR_0001s31640	POPTR_0001s31640 (11)	scaffold_1:30014380-30014642(+) (11)	NA	NA	NA	AT2G18465.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g59060.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.85674.2.S1_at	A	A1MS	POPTR_0001s31640	POPTR_0001s31640 (11)	scaffold_1:30014438-30015013(+) (11)	NA	NA	NA	AT2G18465.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g59060.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.85677.1.S1_at	A	A1TS	POPTR_0005s06530	POPTR_0005s06530 (11)	scaffold_5:4371059-4371535(+) (11)	NA	Q9SIT6	ABC transporter G family member 5	AT2G13610.1	ABC-2 type transporter family protein 	LOC_Os01g42900.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr4g142950.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.85691.1.S1_s_at	A	A1TS	POPTR_0014s15540	POPTR_0014s15540 (11)	scaffold_14:11566717-11568790(-) (11)	NA	NA	NA	AT4G22140.2	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85696.1.S1_at	A	A1TS	POPTR_0001s21110	POPTR_0001s21110 (9)	scaffold_1:19454132-19454250(+) (9)	NA	NA	NA	AT3G15820.1	phosphatidic acid phosphatase-related / PAP2-related 	LOC_Os06g40500.1	expressed protein	Medtr4g005630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.857.2.S1_at	A	A1TS	POPTR_0007s13840	POPTR_0007s13840 (11)	scaffold_7:13854328-13854635(-) (11)	NA	NA	NA	AT1G15380.2	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr5g021550.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.857.3.A1_a_at	A	A1TS	POPTR_0008s16480	POPTR_0008s16480 (11)	scaffold_8:11059986-11060672(+) (11)	NA	NA	NA	AT4G14440.1	3-hydroxyacyl-CoA dehydratase 1 	LOC_Os05g45300.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr2g015150.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.85723.1.A1_a_at	A	A2TS	POPTR_0006s10070	POPTR_0016s12280 (11)//POPTR_0006s10070 (11)	scaffold_16:11629705-11629741(-) (11)//scaffold_6:7481949-7481985(-) (11)	NA	Q9M024	"Thylakoid ADP,ATP carrier protein, chloroplastic"	AT5G01500.1	thylakoid ATP/ADP carrier 	LOC_Os01g16040.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g025560.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85723.1.A1_at	A	A1TS	POPTR_0016s12280	POPTR_0016s12280 (11)	scaffold_16:11629334-11631208(-) (11)	NA	Q9M024	"Thylakoid ADP,ATP carrier protein, chloroplastic"	AT3G51870.1	Mitochondrial substrate carrier family protein 	LOC_Os01g16040.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g025560.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85723.2.A1_at	A	A1TS	POPTR_0006s10070	POPTR_0006s10070 (11)	scaffold_6:7481515-7481730(-) (11)	NA	Q9M024	"Thylakoid ADP,ATP carrier protein, chloroplastic"	AT5G01500.1	thylakoid ATP/ADP carrier 	LOC_Os01g16040.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g025560.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85736.1.S1_at	A	A1TS	POPTR_0010s17300	POPTR_0010s17300 (11)	scaffold_10:15938184-15938680(-) (11)	NA	Q8GWP0	Transcription factor MYB39	AT3G01140.1	myb domain protein 106 	LOC_Os08g33660.1	"MYB family transcription factor, putative, expressed"	Medtr6g013190.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85749.1.S1_at	A	A1TS	POPTR_0002s08340	POPTR_0002s08340 (9)	scaffold_2:5816208-5817966(+) (10)	NA	Q94420	Protein maternal effect lethal 26	AT1G21780.2	BTB/POZ domain-containing protein 	LOC_Os08g01320.2	"C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed"	Medtr3g100540.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.85750.1.S1_at	A	A1TS	POPTR_0010s14040	POPTR_0010s14040 (11)	scaffold_10:13752168-13754246(-) (11)	NA	Q5EA37	Coiled-coil domain-containing protein 130	AT1G25682.1	Family of unknown function (DUF572)  	LOC_Os02g21880.1	"coiled-coil domain-containing protein, putative, expressed"	Medtr1g118070.1	Protein of unknown function DUF572 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85751.1.S1_at	A	A1TS	POPTR_0009s11490	POPTR_0009s11490 (9)	scaffold_9:9524882-9525928(-) (9)	NA	Q9XIA4	"Cytochrome c biogenesis protein CCS1, chloroplastic"	AT1G49380.1	cytochrome c biogenesis protein family 	LOC_Os03g55970.1	"uncharacterized protein ycf44, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85760.1.S1_s_at	A	A1TS	POPTR_0012s06210	POPTR_0012s06210 (11)	scaffold_12:6237429-6238031(-) (11)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.2	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.3	"HEAT repeat family protein, putative, expressed"	AC233660_2.1	Armadillo-like helical AC233660.2 13161-17702 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85771.1.S1_s_at	A	A1TS	POPTR_0001s16190	POPTR_0001s16190 (11)	scaffold_1:13014776-13014970(-) (11)	NA	NA	NA	AT1G53760.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786); Has 171 Blast hits to 171 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 127; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). "	LOC_Os02g05870.1	expressed protein	Medtr8g026990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85773.1.S1_at	A	A1TS	POPTR_0010s23210	POPTR_0010s23210 (11)	scaffold_10:19834476-19834985(-) (11)	NA	Q9FF46	ABC transporter G family member 28	AT1G53390.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g51460.1	"white-brown complex homolog protein, putative, expressed"	Medtr1g120480.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.85797.1.S1_s_at	A	A1TS	POPTR_0002s16160	POPTR_0002s16160 (11)	scaffold_2:12080805-12081770(+) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os09g39640.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.85800.1.S1_s_at	A	A1TS	POPTR_0006s24090	POPTR_0006s24090 (11)	scaffold_6:22771548-22772326(+) (11)	NA	Q11011	Puromycin-sensitive aminopeptidase	AT4G33090.1	aminopeptidase M1 	LOC_Os02g12650.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.8582.1.S1_at	A	A1TS	POPTR_0013s13580	POPTR_0013s13580 (10)	scaffold_13:14040832-14041375(+) (10)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8582.3.S1_a_at	A	A1TS	POPTR_0013s13580	POPTR_0013s13580 (11)	scaffold_13:14040303-14040597(+) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85860.1.S1_s_at	A	A1TS	POPTR_0003s16460	POPTR_0003s16460 (11)	scaffold_3:16051850-16053288(+) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT3G43740.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g32580.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr7g005120.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.85882.1.S1_s_at	A	A2TS	POPTR_0006s03660	POPTR_0006s03660 (11)//POPTR_0016s03630 (11)	scaffold_16:1981883-1982627(+) (11)//scaffold_6:2424581-2425327(-) (11)	NA	Q9ZNZ7	"Ferredoxin-dependent glutamate synthase 1, chloroplastic"	AT5G04140.1	glutamate synthase 1 	LOC_Os07g46460.1	"ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0015930|glutamate synthase activity	NA
PtpAffx.85909.2.A1_at	A	A1MS	POPTR_0002s04190	POPTR_0002s04190 (9)	scaffold_2:2607891-2609868(+) (11)	NA	NA	NA	AT2G42450.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g39790.1	"lipase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85915.1.S1_at	A	A1TS	POPTR_0006s29310	POPTR_0006s29310 (11)	scaffold_6:26726547-26727093(-) (11)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT1G06470.2	Nucleotide/sugar transporter family protein 	LOC_Os06g05980.1	"transporter family protein, putative, expressed"	AC235757_47.1	Protein of unknown function DUF250 AC235757.1 195727-188867 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.85958.1.S1_at	A	A1TS	POPTR_0005s13990	POPTR_0005s13990 (9)	scaffold_5:11014412-11014882(+) (9)	NA	Q39088	Dof zinc finger protein DOF3.4	AT3G50410.1	OBF binding protein 1 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	AC235757_43.1	"Zinc finger, Dof-type AC235757.1 157398-155752 E EGN_Mt090430 200"	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.85968.1.S1_at	A	A1TS	POPTR_0005s17820	POPTR_0005s17820 (11)	scaffold_5:15573471-15573963(+) (11)	NA	Q9SB51	Ubiquitin carboxyl-terminal hydrolase 16	AT4G24560.1	ubiquitin-specific protease 16 	LOC_Os08g37350.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr3g149210.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.85976.1.A1_a_at	A	A1TS	POPTR_0002s11160	POPTR_0002s11160 (11)	scaffold_2:8193515-8195218(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT1G58230.1	binding 	LOC_Os02g06720.1	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85985.1.S1_s_at	A	A1TS	POPTR_0017s06880	POPTR_0017s06880 (11)	scaffold_17:5255433-5255925(+) (11)	NA	NA	NA	AT1G11480.1	eukaryotic translation initiation factor-related 	LOC_Os07g36200.1	"eukaryotic translation initiation factor-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.860.1.A1_at	A	A1TS	POPTR_0005s19350	POPTR_0005s19350 (11)	scaffold_5:18108015-18108583(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.860.2.A1_a_at	A	A1TS	POPTR_0005s19350	POPTR_0005s19350 (11)	scaffold_5:18109387-18109460(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.860.2.A1_at	A	A1MS	POPTR_0005s19350	POPTR_0005s19350 (11)	scaffold_5:18109189-18109401(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86008.1.S1_at	A	A1TS	POPTR_0015s11980	POPTR_0015s11980 (11)	scaffold_15:12436203-12437438(-) (11)	NA	Q9ZUH5	Short-chain dehydrogenase/reductase 2	AT5G51030.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g70430.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g151460.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.86020.1.S1_at	A	A1TS	POPTR_0005s21190	POPTR_0005s21190 (11)	scaffold_5:20321050-20321415(+) (11)	NA	Q12482	Mitochondrial aspartate-glutamate transporter AGC1	AT5G42130.1	Mitochondrial substrate carrier family protein 	LOC_Os01g73420.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g149370.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86064.1.S1_at	A	A1TS	POPTR_0007s15360	POPTR_0007s15360 (11)	scaffold_7:14923284-14923837(+) (11)	NA	O49543	"Cysteine desulfurase 1, mitochondrial"	AT5G65720.1	nitrogen fixation S (NIFS)-like 1 	LOC_Os09g16910.3	"cysteine desulfurase 1, mitochondrial precursor, putative, expressed"	Medtr5g014960.1	"Aminotransferase, class V; "	GO:0008152|metabolic process	NA	NA
PtpAffx.8607.1.S1_a_at	A	A1TS	POPTR_0019s04980	POPTR_0019s04980 (11)	scaffold_19:5166560-5167867(-) (11)	NA	Q552J0	T-complex protein 1 subunit theta	AT3G03960.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g59020.1	"T-complex protein, putative, expressed"	Medtr6g030660.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.8607.3.S1_s_at	A	A1TS	POPTR_0013s05500	POPTR_0013s05500 (11)	scaffold_13:3931028-3932231(+) (11)	POPTR_0019s04980 (6)	Q552J0	T-complex protein 1 subunit theta	AT3G03960.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g59020.1	"T-complex protein, putative, expressed"	Medtr6g030660.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.8607.4.S1_at	A	A1MS	POPTR_0001s20740	POPTR_0001s20740 (11)	scaffold_1:18839369-18839629(-) (11)	NA	NA	NA	AT1G55160.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g51540.1	expressed protein	AC202568_8.1	Ras GTPase; Calcium-binding EF-hand AC202568.9 36216-39258 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8610.2.A1_at	A	A1TS	POPTR_0009s02040	POPTR_0009s02040 (11)	scaffold_9:2656464-2657060(-) (11)	NA	Q680Q4	E3 SUMO-protein ligase SIZ1	AT5G60410.5	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr4g080810.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.86111.1.S1_at	A	A1TS	POPTR_0007s15160	POPTR_0007s15160 (11)	scaffold_7:14780308-14780951(+) (11)	NA	NA	NA	AT3G13062.2	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os02g26860.1	"START domain containing protein, putative, expressed"	Medtr4g163310.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8613.1.S1_at	A	A1TS	POPTR_0004s15710	POPTR_0004s15710 (11)	scaffold_4:16286921-16287278(-) (11)	NA	NA	NA	AT2G16070.2	plastid division2 	LOC_Os07g03130.1	"PDV2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86136.1.S1_at	A	A1TS	POPTR_0001s01740	POPTR_0001s01740 (11)	scaffold_1:1277793-1278765(+) (11)	NA	NA	NA	AT1G31940.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g47000.1	expressed protein	Medtr5g028080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86149.1.S1_at	A	A1TS	POPTR_0002s19050	POPTR_0002s19050 (11)	scaffold_2:14948957-14950642(-) (11)	NA	Q9NUP7	tRNA guanosine-2'-O-methyltransferase TRM13 homolog	AT4G01880.1	methyltransferases 	LOC_Os03g61750.1	expressed protein	NA	NA	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.8615.1.S1_at	A	A1TS	POPTR_0017s14030	POPTR_0017s14030 (10)	scaffold_17:14188430-14189144(-) (10)	NA	Q5R4R4	Protein LSM14 homolog A	AT1G26110.2	decapping 5 	LOC_Os01g02090.1	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86150.1.S1_at	A	A1TS	POPTR_0009s03470	POPTR_0009s03470 (9)	scaffold_9:4091189-4091599(+) (9)	NA	NA	NA	AT5G59350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g47730.2	expressed protein	Medtr7g025740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86153.1.A1_at	A	A1TS	POPTR_0010s11050	POPTR_0010s11050 (11)	scaffold_10:11427142-11427604(-) (11)	NA	P46032	Peptide transporter PTR2	AT2G02040.1	peptide transporter 2 	LOC_Os03g51050.1	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.86181.1.S1_at	A	A1TS	POPTR_0005s05130	POPTR_0005s05130 (9)	scaffold_5:3412386-3413706(+) (9)	NA	NA	NA	AT1G54520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). 	LOC_Os03g48920.1	"DUF1517 domain containing protein, putative, expressed"	Medtr7g140520.1	Protein of unknown function DUF1517 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86182.1.A1_at	A	A1TS	POPTR_0012s10780	POPTR_0012s10780 (11)	scaffold_12:11475786-11477087(+) (11)	NA	Q9LSE2	Transcription factor ICE1	AT3G26744.4	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os11g32100.1	"inducer of CBF expression 1, putative, expressed"	Medtr7g096910.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.86182.2.A1_s_at	A	A1TS	POPTR_0010s08660	POPTR_0010s08660 (11)	scaffold_10:9551485-9551698(+) (11)	NA	Q53389	N-carbamoyl-L-amino acid hydrolase	AT5G43600.1	ureidoglycolate amidohydrolase 	LOC_Os12g40550.1	"peptidase, putative, expressed"	Medtr1g089890.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008237|metallopeptidase activity	NA
PtpAffx.86204.1.S1_s_at	A	A1TS	POPTR_0010s19430	POPTR_0010s19430 (11)	scaffold_10:17343671-17344405(-) (11)	NA	Q9XEE8	Probable protein phosphatase 2C 30	AT2G40180.1	phosphatase 2C5 	LOC_Os03g18150.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86209.1.S1_at	A	A2TS	POPTR_0007s13150	POPTR_0007s13150 (11)//POPTR_0007s13160 (10)	scaffold_7:13296304-13296704(+) (11)//scaffold_7:13298961-13299361(+) (11)	NA	NA	NA	AT3G50900.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66490.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g020770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86213.1.S1_at	A	A1TS	POPTR_0019s05770	POPTR_0019s05770 (10)	scaffold_19:6183463-6183878(+) (10)	NA	Q9M8T3	Putative gamma-glutamylcyclotransferase At3g02910	AT3G02910.1	AIG2-like (avirulence induced gene) family protein 	LOC_Os03g63700.1	"AIG2-like family domain containing protein, expressed"	Medtr5g030080.1	Protein of unknown function UPF0131 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86232.1.S1_at	A	A1TS	POPTR_0014s08320	POPTR_0014s08320 (9)	scaffold_14:6178419-6178886(-) (9)	NA	NA	NA	AT2G46060.1	transmembrane protein-related 	LOC_Os10g30910.1	"transmembrane protein-related, putative, expressed"	AC235567_6.1	EGF-like region AC235567.1 29588-32481 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86241.1.A1_at	A	A1TS	POPTR_0007s07250	POPTR_0007s07250 (9)	scaffold_7:5562369-5562923(-) (9)	NA	Q2TBP5	Transmembrane protein 53	AT3G19970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g51390.2	expressed protein	Medtr5g020580.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86248.1.A1_a_at	A	A1TS	POPTR_0003s04670	POPTR_0003s04670 (11)	scaffold_3:5609485-5611987(+) (11)	NA	NA	NA	AT1G33490.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10140.1); Has 88 Blast hits to 88 proteins in 29 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os05g01510.2	"cytoplasmic membrane protein, putative, expressed"	Medtr4g031680.1	"cytoplasmic membrane protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8627.1.S1_a_at	A	A1TS	POPTR_0007s02410	POPTR_0007s02410 (10)	scaffold_7:1420535-1420717(+) (10)	NA	NA	NA	AT2G43210.2	Ubiquitin-like superfamily protein 	LOC_Os11g18880.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86299.1.S1_at	A	A1TS	POPTR_0010s23470	POPTR_0010s23470 (10)	scaffold_10:20036311-20036927(-) (10)	NA	Q8CIK8	E3 ubiquitin-protein ligase RFWD3	AT5G03450.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g39850.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8635.1.S1_a_at	A	A1TS	POPTR_0012s08310	POPTR_0012s08310 (11)	scaffold_12:9381497-9382330(-) (11)	NA	Q8L5Y9	Pantothenate kinase 2	AT4G32180.1	pantothenate kinase 2 	LOC_Os09g36270.1	"pantothenate kinase, putative, expressed"	Medtr3g113960.1	Eukaryotic pantothenate kinase 	GO:0015937|coenzyme A biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004594|pantothenate kinase activity	NA
PtpAffx.8635.2.S1_a_at	A	A2TS	POPTR_0012s08310	POPTR_0015s08830 (11)//POPTR_0012s08310 (11)	scaffold_12:9382330-9383149(-) (11)//scaffold_15:10178118-10178963(-) (11)	NA	Q8L5Y9	Pantothenate kinase 2	AT4G32180.1	pantothenate kinase 2 	LOC_Os09g36270.1	"pantothenate kinase, putative, expressed"	Medtr3g113960.1	Eukaryotic pantothenate kinase 	GO:0015937|coenzyme A biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004594|pantothenate kinase activity	NA
PtpAffx.86362.1.S1_at	A	A1TS	POPTR_0008s00850	POPTR_0008s00850 (11)	scaffold_8:396361-397224(+) (11)	NA	Q9LU41	"Calcium-transporting ATPase 9, plasma membrane-type"	AT3G21180.1	autoinhibited Ca(2+)-ATPase 9 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.86362.1.S1_s_at	A	A2TS	POPTR_0010s25730	POPTR_0010s25730 (11)//POPTR_0008s00850 (9)	scaffold_10:21259228-21262988(-) (11)//scaffold_8:394562-397157(+) (9)	NA	Q9LU41	"Calcium-transporting ATPase 9, plasma membrane-type"	AT3G21180.1	autoinhibited Ca(2+)-ATPase 9 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.86364.1.A1_a_at	A	A1TS	POPTR_0010s18310	POPTR_0010s18310 (11)	scaffold_10:16604016-16605435(-) (11)	NA	O64527	UPF0678 fatty acid-binding protein-like protein At1g79260	AT1G79260.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1794 (InterPro:IPR014878); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g48760.1	"THAP domain-containing protein 4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86377.1.S1_at	A	A1TS	POPTR_0003s20440	POPTR_0003s20440 (10)	scaffold_3:18933686-18934538(-) (11)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.86388.1.S1_at	A	A1TS	POPTR_0014s15390	POPTR_0014s15390 (10)	scaffold_14:11465305-11467536(-) (10)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT4G15440.1	hydroperoxide lyase 1 	LOC_Os02g02000.1	"cytochrome P450, putative, expressed"	Medtr2g104500.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86393.1.S1_s_at	A	A1TS	POPTR_0005s24780	POPTR_0005s24780 (11)	scaffold_5:23228448-23228686(+) (11)	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.86400.1.S1_at	A	A1TS	POPTR_0013s15110	POPTR_0013s15110 (11)	scaffold_13:15165156-15165788(+) (11)	NA	Q9LVL5	Probable serine/threonine-protein kinase WNK4	AT5G58350.1	with no lysine (K) kinase 4 	LOC_Os12g02250.1	"STE_PAK_Ste20_Slob_Wnk.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g083060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.86410.1.S1_s_at	A	A1TS	POPTR_0014s12860	POPTR_0014s12860 (11)	scaffold_14:9475964-9476336(-) (11)	NA	Q7ZV00	OTU domain-containing protein 6B	AT3G62940.3	Cysteine proteinases superfamily protein 	LOC_Os04g52850.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr7g129940.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86423.1.S1_at	A	A1TS	POPTR_0007s11600	POPTR_0007s11600 (11)	scaffold_7:11969071-11970176(+) (11)	NA	P29162	L-ascorbate oxidase homolog	AT5G66920.1	SKU5  similar 17 	LOC_Os07g02810.1	"L-ascorbate oxidase homolog precursor, putative, expressed"	Medtr5g018260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.86439.1.S1_s_at	A	A1TS	POPTR_0002s16390	POPTR_0002s16390 (11)	scaffold_2:12263154-12263851(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G61490.3	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.86450.1.S1_at	A	A1TS	POPTR_0008s07730	POPTR_0008s07730 (11)	scaffold_8:4742470-4745545(+) (11)	NA	Q93WI9	Protein HEADING DATE 3A	AT1G65480.1	PEBP (phosphatidylethanolamine-binding protein) family protein 	LOC_Os06g06320.1	"osFTL2  FT-Like2 homologous to Flowering Locus T  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	Medtr7g099820.1	"Protein FLOWERING LOCUS T, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86455.1.S1_at	A	A1TS	POPTR_0014s12940	POPTR_0014s12940 (10)	scaffold_14:9530480-9531855(+) (11)	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr8g139670.1	Sodium/hydrogen exchanger subfamily 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.86471.1.S1_at	A	A1TS	POPTR_0006s27890	POPTR_0006s27890 (10)	scaffold_6:25720434-25720763(-) (10)	NA	Q5QQ50	Xylosyltransferase 2	AT2G37585.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	AC229695_3.1	"Glycosyl transferase, family 14 AC229695.5 13205-18395 E EGN_Mt090430 200"	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.86476.1.S1_at	A	A1MS	POPTR_0006s12210	POPTR_0006s12210 (9)	scaffold_6:9357091-9357775(-) (9)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os03g01710.1	expressed protein	Medtr1g074280.1	Prefoldin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86489.1.S1_at	A	A1TS	POPTR_0013s02280	POPTR_0013s02280 (10)	scaffold_13:1359815-1360250(+) (11)	NA	NA	NA	AT5G62440.1	Protein of unknown function (DUF3223) 	LOC_Os03g08810.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86497.1.A1_at	A	A1TS	POPTR_0001s00500	POPTR_0001s00500 (11)	scaffold_1:399204-399456(+) (11)	NA	NA	NA	AT2G35736.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1). 	LOC_Os07g13534.1	expressed protein	AC233655_18.1	hypothetical protein AC233655.2 124799-122734 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86500.1.S1_at	A	A1TS	POPTR_0003s15130	POPTR_0003s15130 (11)	scaffold_3:14995304-14998750(+) (11)	NA	Q9W6I0	Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog	AT5G51220.1	ubiquinol-cytochrome C chaperone family protein 	LOC_Os07g30790.1	"ubiquinol-cytochrome C chaperone family protein, putative, expressed"	Medtr2g009370.1	Ubiquinol-cytochrome C chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86506.1.S1_at	A	A1TS	POPTR_0002s18530	POPTR_0002s18530 (11)	scaffold_2:14425103-14425211(-) (11)	NA	Q8L5J1	"Mannan endo-1,4-beta-mannosidase 4"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g47400.1	"OsMan01 - Endo-Beta-Mannanase, expressed"	Medtr1g103540.1	"Mannan endo-1,4-beta-mannosidase 4 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86513.1.S1_at	A	A1TS	POPTR_0014s05690	POPTR_0014s05690 (10)	scaffold_14:4238491-4238981(-) (10)	NA	Q7XT42	Squamosa promoter-binding-like protein 7	AT1G27370.4	squamosa promoter binding protein-like 10 	LOC_Os04g46580.1	"OsSPL7 - SBP-box gene family member, expressed"	Medtr7g041150.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.86518.1.S1_at	A	A1TS	POPTR_0014s13160	POPTR_0014s13160 (11)	scaffold_14:9672696-9674050(-) (11)	NA	Q8L7U5	Serine/threonine-protein phosphatase BSL1	AT4G03080.1	BRI1 suppressor 1 (BSU1)-like 1 	LOC_Os05g05240.1	"serine/threonine protein phosphatase, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.8652.1.S1_at	A	A1TS	POPTR_0010s26000	POPTR_0010s26000 (11)	scaffold_10:21390809-21391192(-) (11)	NA	P31405	V-type proton ATPase catalytic subunit A	AT1G78900.2	vacuolar ATP synthase subunit A 	LOC_Os06g45120.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.8652.2.S1_at	A	A1TS	POPTR_0010s26000	POPTR_0010s26000 (11)	scaffold_10:21396042-21397863(-) (11)	NA	P31405	V-type proton ATPase catalytic subunit A	AT1G78900.2	vacuolar ATP synthase subunit A 	LOC_Os06g45120.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.86525.1.S1_at	A	A1TS	POPTR_0013s03690	POPTR_0013s03690 (11)	scaffold_13:2356063-2356346(+) (11)	NA	NA	NA	AT4G14746.1	CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os03g06580.2	"MTN26L2 - MtN26 family protein precursor, expressed"	Medtr7g140750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86528.1.S1_at	A	A1TS	POPTR_0010s13660	POPTR_0010s13660 (11)	scaffold_10:13462041-13462697(+) (11)	NA	NA	NA	AT1G68580.2	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os08g33420.1	"agenet domain containing protein, expressed"	Medtr5g068170.1	Bromo adjacent region; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
PtpAffx.86542.1.S1_at	A	A1TS	POPTR_0003s07430	POPTR_0003s07430 (9)	scaffold_3:8991996-8992468(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86545.1.S1_at	A	A1TS	POPTR_0010s23060	POPTR_0010s23060 (11)	scaffold_10:19743002-19743412(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86554.1.A1_at	A	A2TS	POPTR_0008s12900	POPTR_0008s12900 (11)//POPTR_0010s12220 (11)	scaffold_10:12287337-12288550(+) (11)//scaffold_8:8390234-8391532(-) (11)	NA	Q9C6Z2	Nudix hydrolase 25	AT1G30110.2	nudix hydrolase homolog 25 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g034570.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.86554.2.A1_a_at	A	A2TS	POPTR_0008s12900	POPTR_0008s12900 (11)//POPTR_0010s12220 (11)	scaffold_10:12286346-12286416(+) (11)//scaffold_8:8392421-8392491(-) (11)	NA	Q9C6Z2	Nudix hydrolase 25	AT1G30110.2	nudix hydrolase homolog 25 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g034570.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.86560.1.S1_at	A	A1TS	POPTR_0001s13080	POPTR_0001s13080 (10)	scaffold_1:10169686-10170170(+) (10)	NA	Q9LYU7	Inactive leucine-rich repeat receptor-like protein kinase CORYNE	AT5G13290.2	Protein kinase superfamily protein 	LOC_Os01g70260.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr7g020720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.86576.1.S1_at	A	A1TS	POPTR_0016s05340	POPTR_0016s05340 (11)	scaffold_16:3291151-3291214(-) (11)	NA	Q9XFW4	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	AT3G57650.1	lysophosphatidyl acyltransferase 2 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.86587.1.S1_at	A	A1MS	POPTR_0017s10450	POPTR_0017s10450 (10)	scaffold_17:9798650-9798858(-) (10)	NA	C1A3Z5	50S ribosomal protein L13	AT3G01790.2	Ribosomal protein L13 family protein 	LOC_Os08g06474.1	"ribosomal protein L13, putative"	Medtr3g106560.1	Ribosomal protein L13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.86595.1.S1_at	A	A1TS	POPTR_0010s05690	POPTR_0010s05690 (10)	scaffold_10:7173363-7173778(-) (10)	NA	Q5KS50	Coleoptile phototropism protein 1	AT1G67900.3	Phototropic-responsive NPH3 family protein 	LOC_Os02g38120.1	"BTBN3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr5g034190.1	NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.86609.1.S1_at	A	A1TS	POPTR_0015s14500	POPTR_0015s14500 (11)	scaffold_15:14064924-14066208(+) (11)	NA	Q61189	Methylosome subunit pICln	AT5G62290.2	nucleotide-sensitive chloride conductance regulator (ICln) family protein 	LOC_Os10g08879.1	"nucleotide-sensitive chloride conductance regulator containing protein, expressed"	NA	NA	GO:0006884|cell volume homeostasis||GO:0006821|chloride transport	NA	NA
PtpAffx.86619.1.S1_at	A	A1TS	POPTR_0001s37090	POPTR_0001s37090 (10)	scaffold_1:35899405-35899948(-) (10)	NA	NA	NA	AT5G55390.2	ENHANCED DOWNY MILDEW 2 	LOC_Os08g24946.1	"EDM2, putative, expressed"	Medtr3g076430.1	"EDM2; transcription factor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86620.2.S1_at	A	A1TS	POPTR_0005s02400	POPTR_0005s02400 (11)	scaffold_5:1545125-1546570(-) (11)	NA	NA	NA	AT5G27830.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g37940.2	"CRP12 - Cysteine-rich family protein precursor, expressed"	Medtr1g099950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8663.1.A1_at	A	A1TS	POPTR_0011s07510	POPTR_0011s07510 (9)	scaffold_11:8356065-8356209(+) (9)	NA	P53980	Uncharacterized protein YNL011C	AT2G34090.1	maternal effect embryo arrest 18 	LOC_Os01g42800.1	"MEE18, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86634.1.S1_s_at	A	A1TS	POPTR_0002s01580	POPTR_0002s01580 (9)	scaffold_2:852290-852706(+) (11)	NA	Q6CC39	tRNA pseudouridine synthase 1	AT1G20370.1	Pseudouridine synthase family protein 	LOC_Os02g44810.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr8g145890.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.86662.1.S1_at	A	A1TS	POPTR_0012s04340	POPTR_0012s04340 (11)	scaffold_12:3579218-3580017(-) (11)	NA	NA	NA	AT3G18240.2	"Ribosomal protein S24/S35, mitochondrial "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86678.1.S1_at	A	A1TS	POPTR_0007s00840	POPTR_0007s00840 (10)	scaffold_7:426309-426620(+) (10)	NA	Q9FID6	Probable receptor-like protein kinase At5g39020	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02400.1	"protein kinase domain containing protein, expressed"	Medtr1g034490.1	"TAK14, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.8668.1.S1_s_at	A	A2TS	POPTR_0001s25750	POPTR_0001s25750 (11)//POPTR_0009s04910 (11)	scaffold_1:24795642-24796011(+) (11)//scaffold_9:5153784-5154153(+) (11)	NA	Q9ST43	Pleckstrin homology domain-containing protein 1	AT2G29700.1	pleckstrin homologue 1 	LOC_Os01g63800.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g089860.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86683.1.S1_s_at	A	A1TS	POPTR_0011s08690	POPTR_0011s08690 (11)	scaffold_11:10616001-10616276(-) (11)	NA	Q7G188	Fimbrin-1	AT4G26700.2	fimbrin 1 	LOC_Os02g48740.1	"fimbrin-like protein 2, putative, expressed"	Medtr5g101620.1	"Actin-binding, actinin-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86686.1.S1_at	A	A1MS	POPTR_0006s12970	POPTR_0006s12970 (11)	scaffold_6:10225436-10225716(-) (11)	NA	NA	NA	AT5G03230.1	"Protein of unknown function, DUF584 "	LOC_Os04g43990.1	"DUF584 domain containing protein, putative, expressed"	Medtr7g121560.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8670.1.A1_at	A	A1TS	POPTR_0009s16140	POPTR_0009s16140 (11)	scaffold_9:12343626-12344055(+) (11)	NA	Q9SEA0	"Capsanthin/capsorubin synthase, chromoplast"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr2g107590.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.86704.1.S1_at	A	A1TS	POPTR_0002s09690	POPTR_0002s09690 (9)	scaffold_2:6949328-6949485(+) (9)	NA	NA	NA	AT1G34630.1	BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	LOC_Os03g09090.1	expressed protein	Medtr2g052140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86721.1.A1_s_at	A	A1TS	POPTR_0001s10580	POPTR_0001s10580 (11)	scaffold_1:8233291-8233579(+) (11)	NA	NA	NA	AT4G23840.1	Leucine-rich repeat (LRR) family protein 	LOC_Os05g12140.1	"Leucine Rich Repeat family protein, expressed"	Medtr3g058830.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.86724.1.S1_at	A	A1TS	POPTR_0009s03730	POPTR_0009s03730 (10)	scaffold_9:4332861-4334790(-) (10)	POPTR_0001s24840 (7)	Q6R0E3	Telomere repeat-binding protein 5	AT1G07540.1	TRF-like 2 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr2g116750.1	Ubiquitin; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86726.1.A1_s_at	A	A1TS	POPTR_0745s00200	POPTR_0745s00200 (11)	scaffold_3:15015131-15016110(-) (11)//scaffold_745:455-1340(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8674.1.S1_at	A	A1MS	POPTR_0003s16420	POPTR_0003s16420 (11)	scaffold_3:15999676-15999818(-) (11)	NA	NA	NA	AT2G33510.1	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). 	LOC_Os02g31140.1	"major ampullate spidroin 2-2, putative, expressed"	Medtr7g005170.1	WW/Rsp5/WWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8674.3.S1_at	A	A1TS	POPTR_0001s13290	POPTR_0001s13290 (9)	scaffold_1:10384582-10384623(-) (9)	NA	NA	NA	AT2G33510.1	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). 	LOC_Os02g31140.1	"major ampullate spidroin 2-2, putative, expressed"	Medtr7g005170.1	WW/Rsp5/WWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8674.4.S1_at	A	A1TS	POPTR_0001s13290	POPTR_0001s13290 (11)	scaffold_1:10384213-10384734(-) (11)	NA	NA	NA	AT2G33510.1	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). 	LOC_Os02g31140.1	"major ampullate spidroin 2-2, putative, expressed"	Medtr7g005170.1	WW/Rsp5/WWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86742.1.S1_at	A	A1TS	POPTR_0010s13300	POPTR_0010s13300 (11)	scaffold_10:13164952-13166143(+) (11)	NA	NA	NA	AT1G68260.1	Thioesterase superfamily protein 	LOC_Os04g46730.1	"thioesterase family protein, putative, expressed"	Medtr5g067300.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86747.1.A1_at	A	A1MS	POPTR_0002s13240	POPTR_0002s13240 (11)	scaffold_2:9863170-9863617(-) (11)	NA	Q9ZQE5	Pentatricopeptide repeat-containing protein At2g15690	AT2G15690.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g09530.2	"pentatricopeptide, putative, expressed"	Medtr6g093250.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8675.1.S1_at	A	A1TS	POPTR_0007s09635	POPTR_0007s09635 (11)	scaffold_7:9135284-9135796(+) (11)	NA	Q04832	DNA-binding protein HEXBP	AT4G36020.1	cold shock domain protein 1 	LOC_Os02g02870.1	"glycine-rich protein 2, putative, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.86753.1.A1_s_at	A	A1TS	POPTR_0007s09740	POPTR_0007s09740 (11)	scaffold_7:9248739-9248889(-) (11)	NA	P55034	26S proteasome non-ATPase regulatory subunit 4	AT4G38630.1	regulatory particle non-ATPase 10 	LOC_Os03g13970.2	"26S proteasome non-ATPase regulatory subunit 4, putative, expressed"	Medtr5g022350.1	"von Willebrand factor, type A; Ubiquitin interacting motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86757.1.A1_at	A	A1TS	POPTR_0005s26090	POPTR_0005s26090 (11)	scaffold_5:24202651-24203496(-) (11)	NA	NA	NA	AT4G34860.2	Plant neutral invertase family protein 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8676.1.A1_at	A	A1TS	POPTR_0004s23250	POPTR_0004s23250 (11)	scaffold_4:22028527-22029309(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT1G09810.1	evolutionarily conserved C-terminal region 11 	LOC_Os01g48790.2	"YT521-B-like family domain containing protein, expressed"	Medtr2g005610.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86766.1.A1_at	A	A1TS	POPTR_0016s12220	POPTR_0016s12220 (11)	scaffold_16:11558197-11559656(-) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT3G09010.1	Protein kinase superfamily protein 	LOC_Os03g15770.3	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr3g025410.1	Protein kinase; Alpha-isopropylmalate/homocitrate synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.86770.1.S1_at	A	A1MS	POPTR_0014s11410	POPTR_0014s11410 (11)	scaffold_14:8488892-8489164(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86783.1.A1_at	A	A1MS	POPTR_0013s06450	POPTR_0013s06450 (10)	scaffold_13:5036438-5036699(+) (10)	NA	Q9FJT8	Histone acetyltransferase type B catalytic subunit	AT5G56740.1	histone acetyltransferase of the GNAT family 2 	LOC_Os09g17850.1	"acetyltransferase type B catalytic subunit, putative, expressed"	Medtr5g088060.1	"Histone acetyltransferase type B catalytic subunit, putative "	GO:0016568|chromatin modification	GO:0004402|histone acetyltransferase activity	NA
PtpAffx.8679.1.A1_s_at	A	A1TS	POPTR_0010s17780	POPTR_0010s17780 (11)	scaffold_10:16250691-16250896(+) (11)	NA	Q92804	TATA-binding protein-associated factor 2N	AT1G50300.1	TBP-associated factor 15 	LOC_Os09g12800.1	"zinc finger Ran-binding domain-containing protein 2, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.86793.1.A1_at	A	A1TS	POPTR_0012s12820	POPTR_0012s12820 (11)	scaffold_12:13221620-13222001(-) (11)	NA	NA	NA	AT5G37010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65710.1); Has 6746 Blast hits to 5259 proteins in 486 species: Archae - 7; Bacteria - 485; Metazoa - 3508; Fungi - 577; Plants - 378; Viruses - 50; Other Eukaryotes - 1741 (source: NCBI BLink). 	LOC_Os04g44640.1	"ulp1 protease family, C-terminal catalytic domain containing protein, expressed"	Medtr5g084000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86796.1.A1_at	A	A1TS	POPTR_0006s24310	POPTR_0006s24310 (10)	scaffold_6:22953848-22954012(+) (10)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT2G26180.1	IQ-domain 6 	LOC_Os01g09790.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g139750.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86804.2.A1_a_at	A	A1MS	POPTR_0001s01090	POPTR_0001s01090 (11)	scaffold_1:856203-856459(-) (11)	NA	Q9ZPR1	Cell division control protein 48 homolog B	AT2G03670.1	cell division cycle 48B 	LOC_Os04g42110.1	"cell division control protein 48 homolog B, putative, expressed"	Medtr7g105950.2	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.86833.1.A1_at	A	A1TS	POPTR_0009s01020	POPTR_0009s01020 (9)	scaffold_9:1133892-1134175(-) (9)	NA	Q42430	Zinc finger protein 1	AT2G28200.1	C2H2-type zinc finger family protein 	LOC_Os02g57790.1	ZOS2-19 - C2H2 zinc finger protein	Medtr4g076150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.86848.1.S1_at	A	A1TS	POPTR_0002s13610	POPTR_0002s13610 (10)	scaffold_2:10084030-10084650(-) (11)	NA	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.8685.2.S1_a_at	A	A1TS	POPTR_0014s18360	POPTR_0014s18360 (9)	scaffold_14:15459276-15459478(+) (9)	NA	Q54TC5	Maf-like protein DDB_G0281937	AT5G42770.2	Maf-like protein 	LOC_Os11g34770.1	"maf, putative, expressed"	Medtr8g093260.1	Maf-like protein 	NA	NA	GO:0005737|cytoplasm
PtpAffx.8685.3.S1_a_at	A	A1TS	POPTR_0016s00400	POPTR_0016s00400 (11)	scaffold_16:102691-102905(-) (11)	NA	P49104	Ras-related protein Rab-2-B	AT4G17170.1	RAB GTPase homolog B1C 	LOC_Os02g37420.1	"ras-related protein, putative, expressed"	Medtr2g033230.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.8685.4.S1_a_at	A	A1TS	POPTR_0014s18360	POPTR_0014s18360 (11)	scaffold_14:15455164-15455801(+) (11)	NA	Q54TC5	Maf-like protein DDB_G0281937	AT5G42770.2	Maf-like protein 	LOC_Os11g34770.1	"maf, putative, expressed"	Medtr8g093260.1	Maf-like protein 	NA	NA	GO:0005737|cytoplasm
PtpAffx.8685.5.S1_a_at	A	A1TS	POPTR_0014s18360	POPTR_0014s18360 (11)	scaffold_14:15458146-15458607(+) (11)	NA	Q54TC5	Maf-like protein DDB_G0281937	AT5G42770.2	Maf-like protein 	LOC_Os11g34770.1	"maf, putative, expressed"	Medtr8g093260.1	Maf-like protein 	NA	NA	GO:0005737|cytoplasm
PtpAffx.8685.5.S1_at	A	A1TS	POPTR_0014s18360	POPTR_0014s18360 (11)	scaffold_14:15458781-15459030(+) (11)	NA	Q54TC5	Maf-like protein DDB_G0281937	AT5G42770.2	Maf-like protein 	LOC_Os11g34770.1	"maf, putative, expressed"	Medtr8g093260.1	Maf-like protein 	NA	NA	GO:0005737|cytoplasm
PtpAffx.8686.1.S1_s_at	A	A2TS	POPTR_0002s04610	POPTR_0005s23950 (11)//POPTR_0002s04610 (11)	scaffold_2:2878106-2879207(+) (11)//scaffold_5:22633735-22634816(-) (11)	NA	O22769	"NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial"	AT4G02580.1	"NADH-ubiquinone oxidoreductase 24 kDa subunit, putative "	LOC_Os05g43360.1	"NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed"	Medtr2g126810.1	Thioredoxin fold 	GO:0055114|oxidation reduction	GO:0051287|NAD or NADH binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.86867.2.A1_a_at	A	A1TS	POPTR_0014s07380	POPTR_0014s07380 (10)	scaffold_14:5560127-5560665(+) (10)	NA	Q9FNZ1	Zinc finger CCCH domain-containing protein 63	AT5G51980.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g45480.1	"nucleic acid binding protein, putative, expressed"	AC235567_67.1	"Zinc finger, CCCH-type AC235567.1 251711-249065 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.86893.1.A1_s_at	A	A1TS	POPTR_0005s04890	POPTR_0005s04890 (11)	scaffold_5:3258638-3259196(+) (11)	NA	Q9CAN5	"Pentatricopeptide repeat-containing protein At1g63080, mitochondrial"	AT1G63080.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g01130.1	"pentatricopeptide containing protein, putative, expressed"	Medtr6g089560.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86896.1.S1_at	A	A1TS	POPTR_0014s03870	POPTR_0014s03870 (10)	scaffold_14:3096709-3097080(+) (10)	NA	NA	NA	AT5G53220.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g12180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8690.1.A1_at	A	A1TS	POPTR_0012s14140	POPTR_0012s14140 (11)	scaffold_12:14130525-14131050(-) (11)	NA	O65351	Subtilisin-like protease	AT5G51750.1	subtilase 1.3 	LOC_Os04g48416.1	"OsSub45 - Putative Subtilisin homologue, expressed"	Medtr1g130300.1	"Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.8691.1.S1_at	A	A2TS	POPTR_0001s28340	POPTR_0009s07580 (11)//POPTR_0001s28340 (11)	scaffold_1:27137923-27139029(+) (11)//scaffold_9:7055703-7056728(+) (11)	NA	Q8TCT9	Minor histocompatibility antigen H13	AT2G03120.1	signal peptide peptidase 	LOC_Os02g02530.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g009380.2	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.8691.2.S1_a_at	A	A2TS	POPTR_0001s28340	POPTR_0009s07580 (11)//POPTR_0001s28340 (11)	scaffold_1:27134584-27135079(+) (11)//scaffold_9:7052232-7052722(+) (11)	NA	Q8TCT9	Minor histocompatibility antigen H13	AT2G03120.1	signal peptide peptidase 	LOC_Os02g02530.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g009380.2	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.8691.2.S1_at	A	A1TS	POPTR_0001s28340	POPTR_0001s28340 (9)	scaffold_1:27134049-27135064(+) (9)	NA	Q8TCT9	Minor histocompatibility antigen H13	AT2G03120.1	signal peptide peptidase 	LOC_Os02g02530.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g009380.2	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.86923.1.A1_at	A	A1TS	POPTR_0001s39980	POPTR_0001s39980 (10)	scaffold_1:39311432-39311465(+) (10)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g092470.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86924.1.A1_at	A	A1TS	POPTR_0012s08180	POPTR_0012s08180 (11)	scaffold_12:9220530-9221558(+) (11)	NA	Q7KWX9	Putative exosome complex exonuclease rrp40	AT4G32175.1	PNAS-3 related 	LOC_Os01g66730.2	"exosome complex exonuclease RRP40, putative, expressed"	Medtr5g045990.1	"Exosome complex exonuclease RRP40, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86948.1.S1_s_at	A	A3TS	POPTR_0004s22990	POPTR_0433s00200 (11)//POPTR_0601s00200 (11)//POPTR_0004s22990 (11)	scaffold_4:21814153-21814494(+) (11)//scaffold_433:9240-9581(-) (11)//scaffold_601:8854-9195(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.8698.1.A1_at	A	A1TS	POPTR_0017s05890	POPTR_0017s05890 (9)	scaffold_17:4574683-4575350(+) (9)	NA	NA	NA	AT1G05970.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g15270.1	"RNA-binding region RNP-1, putative, expressed"	Medtr3g022190.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.87003.1.A1_s_at	A	A1TS	POPTR_0004s03230	POPTR_0004s03230 (11)	scaffold_4:2174313-2174349(-) (11)	NA	NA	NA	AT4G05150.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os07g37040.1	"PB1 domain containing protein, expressed"	Medtr4g124660.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87019.1.A1_at	A	A1TS	POPTR_0001s28200	POPTR_0001s28200 (11)	scaffold_1:26973592-26974237(+) (11)	NA	Q8BL80	Rho GTPase-activating protein 22	AT5G19390.2	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g096580.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.87030.1.A1_at	A	A1TS	POPTR_0006s08770	POPTR_0006s08770 (11)	scaffold_6:6453121-6453480(-) (11)	NA	Q93VV0	Probable S-acyltransferase At3g09320	AT3G09320.1	DHHC-type zinc finger family protein 	LOC_Os01g62620.1	"DHHC zinc finger domain containing protein, expressed"	Medtr1g120410.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.87080.1.A1_at	A	A1MS	POPTR_0027s00430	POPTR_0027s00430 (9)	scaffold_27:164207-173257(-) (11)//scaffold_27:246998-253754(-) (9)//scaffold_3:1898115-1898401(+) (10)	POPTR_0003s02140 (8)//POPTR_0027s00370 (8)	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87129.1.A1_at	A	A1TS	POPTR_0009s01240	POPTR_0009s01240 (9)	scaffold_9:1448331-1448688(-) (9)	NA	Q8GW72	Alpha-L-fucosidase 1	AT2G28100.1	alpha-L-fucosidase 1 	LOC_Os04g47280.1	"ATFUC1, putative, expressed"	Medtr2g113690.1	"Glycoside hydrolase, family 29 (alpha-L-fucosidase); Galactose-binding like "	GO:0005975|carbohydrate metabolic process	GO:0004560|alpha-L-fucosidase activity	NA
PtpAffx.87135.1.A1_at	A	A1TS	POPTR_0010s21120	POPTR_0010s21120 (11)	scaffold_10:18535679-18536153(+) (11)	NA	NA	NA	AT2G39650.1	Protein of unknown function (DUF506)  	LOC_Os01g74250.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr7g094290.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87139.1.A1_at	A	A1TS	POPTR_0019s11000	POPTR_0019s11000 (11)	scaffold_19:12431520-12431892(-) (11)	NA	Q4Z8K6	Ran-binding proteins 9/10 homolog	AT1G35470.2	SPla/RYanodine receptor (SPRY) domain-containing protein 	LOC_Os02g35070.1	"SPRY-domain containing protein, putative, expressed"	Medtr4g033600.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY; Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8714.1.S1_at	A	A1TS	POPTR_0016s06750	POPTR_0016s06750 (11)	scaffold_16:4563565-4564746(-) (11)	NA	Q9SF23	Dihydroneopterin aldolase	AT3G11750.1	Dihydroneopterin aldolase 	LOC_Os09g38759.1	"dihydroneopterin aldolase, putative, expressed"	Medtr2g103750.1	Dihydroneopterin aldolase family 	GO:0006760|folic acid and derivative metabolic process||GO:0044281|small molecule metabolic process	GO:0004150|dihydroneopterin aldolase activity	NA
PtpAffx.87154.1.A1_at	A	A2TS	POPTR_0096s00210	POPTR_0096s00210 (11)//POPTR_0017s01680 (10)	scaffold_17:1216857-1217947(+) (10)//scaffold_96:3140-4237(-) (11)	NA	O31634	Uncharacterized membrane protein yjcL	AT5G24000.1	Protein of unknown function (DUF819) 	LOC_Os06g01790.1	expressed protein	Medtr1g126520.1	Protein of unknown function DUF819 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87159.1.A1_at	A	A1TS	POPTR_0009s16390	POPTR_0009s16390 (10)	scaffold_9:12467668-12468004(-) (10)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G52500.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58840.1	"Eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g105840.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87162.1.A1_at	A	A1TS	POPTR_0010s10010	POPTR_0010s10010 (11)	scaffold_10:10617148-10617644(+) (11)	NA	Q94AZ2	Sugar transport protein 13	AT5G26340.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.8717.2.S1_a_at	A	A1TS	POPTR_0013s02410	POPTR_0013s02410 (11)	scaffold_13:1443041-1443670(+) (11)	NA	Q76P23	Mitochondrial substrate carrier family protein Q	AT3G05290.1	peroxisomal adenine nucleotide carrier 1 	LOC_Os05g32630.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g040670.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8717.3.S1_at	A	A1TS	POPTR_0005s03680	POPTR_0005s03680 (11)	scaffold_5:2456961-2457497(+) (11)	NA	Q76P23	Mitochondrial substrate carrier family protein Q	AT3G05290.1	peroxisomal adenine nucleotide carrier 1 	LOC_Os05g32630.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g040670.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87172.1.S1_at	A	A1TS	POPTR_0011s13600	POPTR_0011s13600 (11)	scaffold_11:16309285-16309703(-) (11)	NA	Q9FH36	Probable galacturonosyltransferase 12	AT5G54690.1	galacturonosyltransferase 12 	LOC_Os12g38930.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g096780.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.8719.1.S1_at	A	A1TS	POPTR_0017s12580	POPTR_0017s12580 (11)	scaffold_17:12797222-12797621(+) (11)	NA	NA	NA	AT3G29270.2	RING/U-box superfamily protein 	LOC_Os03g31320.2	"RING zinc finger protein-like, putative, expressed"	Medtr6g013870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8720.2.S1_at	A	A1TS	POPTR_0053s00210	POPTR_0053s00210 (9)	scaffold_53:32067-32150(+) (9)//scaffold_53:83909-83992(+) (9)//scaffold_53:120248-129759(+) (11)//scaffold_73:41211-41866(+) (10)	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136390.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.8720.2.S1_s_at	A	A6TS	POPTR_0019s02790	POPTR_0019s02790 (11)//POPTR_0053s00200 (11)//POPTR_0073s00220 (11)//POPTR_0073s00230 (10)//POPTR_0053s00240 (10)//POPTR_0019s01970 (10)	scaffold_19:1745441-1752825(+) (11)//scaffold_19:1752627-1753034(+) (9)//scaffold_19:2593977-2594382(-) (11)//scaffold_53:16106-16513(+) (11)//scaffold_53:31552-31957(+) (9)//scaffold_53:119733-120138(+) (11)//scaffold_73:30674-31081(+) (11)//scaffold_73:41300-41686(+) (10)//scaffold_73:81469-81876(+) (9)	POPTR_0053s00210 (7)//POPTR_0073s00260 (6)	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.8725.2.A1_at	A	A1TS	POPTR_0006s27050	POPTR_0006s27050 (11)	scaffold_6:25064936-25065125(-) (11)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os06g40450.3	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87267.1.S1_at	A	A1TS	POPTR_0012s05800	POPTR_0012s05800 (9)	scaffold_12:5610557-5610897(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87304.1.S1_at	A	A1TS	POPTR_0014s05430	POPTR_0014s05430 (11)	scaffold_14:4067143-4068472(-) (11)	NA	NA	NA	AT3G60450.1	Phosphoglycerate mutase family protein 	LOC_Os03g01180.1	"phosphoglycerate mutase, putative, expressed"	Medtr8g006090.1	PRIB5 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87325.1.S1_at	A	A1TS	POPTR_0003s16620	POPTR_0003s16620 (11)	scaffold_3:16189612-16190068(-) (11)	POPTR_0001s13490 (6)	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os08g42080.1	"ACR5, putative, expressed"	Medtr7g022460.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.87354.1.S1_at	A	A1TS	POPTR_0017s09850	POPTR_0017s09850 (11)	scaffold_17:8564877-8565486(+) (11)	NA	Q9FKS0	"Uridine kinase-like protein 1, chloroplastic"	AT5G40870.1	uridine kinase/uracil phosphoribosyltransferase 1 	LOC_Os09g32820.1	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.87398.1.A1_at	A	A1TS	POPTR_0013s08050	POPTR_0013s08050 (10)	scaffold_13:6970716-6973392(-) (10)	NA	Q67XL4	"Uncharacterized CRM domain-containing protein At3g25440, chloroplastic"	AT4G13070.1	RNA-binding CRS1 / YhbY (CRM) domain protein 	LOC_Os06g20030.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr8g138320.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.8742.1.A1_at	A	A1TS	POPTR_0010s06160	POPTR_0010s06160 (11)	scaffold_10:7588256-7588809(+) (11)	NA	O04450	T-complex protein 1 subunit epsilon	AT1G24510.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g36700.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.8745.1.S1_a_at	A	A1TS	POPTR_0007s03530	POPTR_0007s03530 (11)	scaffold_17:5857436-5857477(+) (11)//scaffold_7:2030400-2030441(+) (11)	NA	Q9FY69	Transcription factor bHLH143	AT5G09460.1	sequence-specific DNA binding transcription factors;transcription regulators 	LOC_Os03g27390.2	"CPuORF35 - conserved peptide uORF-containing transcript, expressed"	Medtr2g009410.1	"transcription factor/ transcription regulator, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8745.2.A1_at	A	A1TS	POPTR_0007s03530	POPTR_0007s03530 (11)	scaffold_7:2030475-2030927(+) (11)	NA	Q9FY69	Transcription factor bHLH143	AT5G09460.1	sequence-specific DNA binding transcription factors;transcription regulators 	LOC_Os03g27390.2	"CPuORF35 - conserved peptide uORF-containing transcript, expressed"	Medtr2g009410.1	"transcription factor/ transcription regulator, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87540.1.S1_at	A	A1TS	POPTR_0010s21950	POPTR_0010s21950 (11)	scaffold_10:19060440-19062071(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G12360.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87557.1.S1_s_at	A	A1TS	POPTR_0012s14190	POPTR_0012s14190 (11)	scaffold_12:14169338-14170404(-) (11)	NA	Q39189	DEAD-box ATP-dependent RNA helicase 7	AT5G62190.1	DEAD box RNA helicase (PRH75) 	LOC_Os09g34910.1	"DEAD-box ATP-dependent RNA helicase 7, putative, expressed"	Medtr1g130350.1	"Helicase, C-terminal; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.87578.1.S1_at	A	A1TS	POPTR_0003s20780	POPTR_0003s20780 (11)	scaffold_3:19211556-19211981(+) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os03g59760.2	"RING finger protein 126, putative, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87589.1.S1_at	A	A1MS	POPTR_0010s10940	POPTR_0010s10940 (11)	scaffold_10:11335761-11336272(+) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT2G02080.1	indeterminate(ID)-domain 4 	LOC_Os02g45054.1	"ZOS2-15 - C2H2 zinc finger protein, expressed"	Medtr1g039670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.87589.1.S1_s_at	A	A1TS	POPTR_0010s10940	POPTR_0010s10940 (11)	scaffold_10:11335807-11336407(+) (11)	POPTR_0008s14180 (8)//POPTR_0008s14190 (8)//POPTR_0010s10950 (6)	Q9FFH3	Zinc finger protein NUTCRACKER	AT2G02080.1	indeterminate(ID)-domain 4 	LOC_Os02g45054.1	"ZOS2-15 - C2H2 zinc finger protein, expressed"	Medtr1g039670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.87589.2.A1_at	A	A1MA	POPTR_0008s14190	POPTR_0008s14190 (10)	scaffold_8:9378653-9379194(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G02070.1	indeterminate(ID)-domain 5 	LOC_Os09g38340.3	"ZOS9-17 - C2H2 zinc finger protein, expressed"	Medtr1g039670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.87591.1.S1_at	A	A1TS	POPTR_0010s15280	POPTR_0010s15280 (11)	scaffold_10:14611858-14612355(+) (11)	NA	NA	NA	AT5G49450.1	basic leucine-zipper 1 	LOC_Os02g03960.1	"CPuORF1 - conserved peptide uORF-containing transcript, expressed"	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.87608.1.S1_at	A	A1MS	POPTR_0010s21370	POPTR_0010s21370 (9)	scaffold_10:18684580-18684850(+) (9)	NA	Q42540	Ubiquitin-conjugating enzyme E2 7	AT5G59300.1	ubiquitin carrier protein 7 	LOC_Os05g38550.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g078810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.87640.1.S1_at	A	A1TS	POPTR_0007s02110	POPTR_0007s02110 (11)	scaffold_7:1241459-1241847(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87695.1.S1_at	A	A1TS	POPTR_0008s09050	POPTR_0008s09050 (11)	scaffold_8:5610776-5612115(-) (11)	NA	Q9SEL5	Vesicle transport v-SNARE 12	AT1G26670.1	Vesicle transport v-SNARE family protein 	LOC_Os01g51120.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr5g045560.1	Vesicle transport v-SNARE 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane
PtpAffx.87749.1.S1_at	A	A1TS	POPTR_0014s04680	POPTR_0014s04680 (10)	scaffold_14:3581318-3582610(-) (10)	NA	Q0DCT8	Protein kinase G11A	AT2G44830.1	Protein kinase superfamily protein 	LOC_Os04g46180.2	"AGC_PVPK_like_kin82y.11 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.8775.1.A1_s_at	A	A1TS	POPTR_0002s19210	POPTR_0002s19210 (11)	scaffold_2:15132656-15132813(+) (11)	NA	O48920	ADP-ribosylation factor	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os03g59740.3	"ADP-ribosylation factor, putative, expressed"	Medtr1g106180.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.87750.1.S1_s_at	A	A2TS	POPTR_0002s19700	POPTR_0014s11570 (11)//POPTR_0002s19700 (11)	scaffold_14:8575457-8575998(-) (11)//scaffold_2:15647879-15648420(-) (11)	NA	Q8VZF3	"Probable glutamyl endopeptidase, chloroplastic"	AT2G47390.1	Prolyl oligopeptidase family protein 	LOC_Os03g19410.1	"OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g132980.1	"Peptidase S9, prolyl oligopeptidase active site region "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.87768.1.S1_at	A	A1TS	POPTR_0017s03500	POPTR_0017s03500 (11)	scaffold_17:2542746-2544476(-) (11)	NA	Q54PN3	Putative mediator of RNA polymerase II transcription subunit 6	AT3G21350.1	RNA polymerase transcriptional regulation mediator-related 	LOC_Os06g11370.1	"mediator of RNA polymerase II transcription subunit 6, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.87779.1.S1_at	A	A1TS	POPTR_0008s02720	POPTR_0008s02720 (10)	scaffold_8:1375093-1377203(+) (10)	NA	A6QLT2	Myotubularin-related protein 2	AT3G10550.1	Myotubularin-like phosphatases II superfamily 	LOC_Os08g44260.1	"inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed"	Medtr1g116840.1	Myotubularin-related 	GO:0016311|dephosphorylation	GO:0016791|phosphatase activity	NA
PtpAffx.878.1.S1_at	A	A1TS	POPTR_0008s06620	POPTR_0008s06620 (11)	scaffold_8:3957369-3958028(-) (11)	NA	O04204	60S acidic ribosomal protein P0-1	AT2G40010.1	Ribosomal protein L10 family protein 	LOC_Os08g03640.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr5g089540.1	Ribosomal protein L10; Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0042254|ribosome biogenesis||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.878.3.A1_at	A	A1TS	POPTR_0002s07940	POPTR_0002s07940 (11)	scaffold_2:5487716-5488117(+) (11)	NA	Q0WQ57	Auxilin-related protein 2	AT1G21660.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g25320.1	"auxilin, putative, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.878.4.S1_at	A	A1TS	POPTR_0005s20410	POPTR_0005s20410 (9)	scaffold_5:19473571-19473885(-) (9)	NA	Q9SU08	Auxilin-related protein 1	AT1G21660.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g25320.1	"auxilin, putative, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.878.5.S1_a_at	A	A1TS	POPTR_0010s18240	POPTR_0010s18240 (9)	scaffold_10:16573613-16574112(-) (9)	NA	O64517	Metacaspase-4	AT1G79340.1	metacaspase 4 	LOC_Os01g58580.1	"ICE-like protease p20 domain containing protein, putative, expressed"	Medtr2g085570.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.87806.1.S1_at	A	A1TS	POPTR_0008s03410	POPTR_0008s03410 (11)	scaffold_8:1812050-1812860(+) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	Medtr1g120630.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.87826.1.S1_at	A	A1TS	POPTR_0001s06340	POPTR_0001s06340 (11)	scaffold_1:4862906-4863966(-) (11)	NA	Q54EY2	Translation initiation factor eIF-2B subunit beta	AT3G07300.2	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os10g25320.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.87828.1.S1_at	A	A1TS	POPTR_0006s12150	POPTR_0006s12150 (10)	scaffold_6:9304314-9304696(+) (11)	NA	O48921	"Cytochrome P450 97B2, chloroplastic"	AT3G53130.1	Cytochrome P450 superfamily protein 	LOC_Os10g39930.2	"cytochrome P450 97B2, putative, expressed"	Medtr1g074260.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.87857.1.S1_at	A	A1MS	POPTR_0019s07220	POPTR_0019s07220 (9)	scaffold_19:8162351-8162750(-) (9)	NA	Q9LX65	V-type proton ATPase subunit H	AT3G42050.1	vacuolar ATP synthase subunit H family protein 	LOC_Os07g36470.1	"vacuolar ATP synthase subunit H, putative, expressed"	Medtr8g093980.1	"Cytochrome b5; V-ATPase subunit H, C-terminal "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0000221|""vacuolar proton-transporting V-type ATPase, V1 domain"""
PtpAffx.87868.1.A1_at	A	A1TS	POPTR_0007s03570	POPTR_0007s03570 (11)	scaffold_7:2056879-2057342(-) (11)	NA	Q8W490	Serine/threonine-protein kinase PEPKR2	AT1G12680.1	phosphoenolpyruvate carboxylase-related kinase 2 	LOC_Os09g29170.2	"CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.87881.1.A1_at	A	A1TS	POPTR_0008s13820	POPTR_0008s13820 (11)	scaffold_8:9103384-9103641(-) (11)	NA	P48261	Anthranilate synthase component II	AT1G25220.1	anthranilate synthase beta subunit 1 	LOC_Os03g50880.1	"class I glutamine amidotransferase, putative, expressed"	Medtr1g121260.1	Anthranilate synthase component II/delta crystallin 	NA	GO:0003824|catalytic activity	NA
PtpAffx.8789.1.S1_a_at	A	A1TS	POPTR_0013s13850	POPTR_0013s13850 (11)	scaffold_13:14198997-14199261(+) (11)//scaffold_481:34-298(+) (11)	NA	Q9JJK2	LanC-like protein 2	AT2G20770.1	GCR2-like 2 	LOC_Os04g44730.1	"lanC-like protein 2, putative, expressed"	Medtr3g102050.2	Lanthionine synthetase C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87894.1.S1_at	A	A2TS	POPTR_0008s01610	POPTR_0162s00320 (11)//POPTR_0008s01610 (11)	scaffold_162:52265-52326(+) (11)//scaffold_8:771821-771882(-) (11)//scaffold_8:786909-786970(-) (11)	NA	NA	NA	AT5G22040.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os03g16730.1	expressed protein	Medtr1g112100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87894.1.S1_s_at	A	A3TS	POPTR_0008s01550	POPTR_0162s00320 (11)//POPTR_0008s01550 (11)//POPTR_0008s01610 (11)	scaffold_162:52535-53690(+) (11)//scaffold_8:770457-771612(-) (11)//scaffold_8:785601-786703(-) (11)	POPTR_0162s00270 (7)	NA	NA	AT5G22040.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os03g16730.1	expressed protein	Medtr1g112100.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87901.1.A1_at	A	A1TS	POPTR_0006s06370	POPTR_0006s06370 (11)	scaffold_6:4542093-4543386(+) (11)	NA	Q5ZHV2	"N-alpha-acetyltransferase 35, NatC auxiliary subunit"	AT2G11000.1	MAK10 homologue 	LOC_Os02g55950.1	"ATMAK10, putative, expressed"	Medtr8g121510.1	"Protein MAK10 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87935.1.S1_at	A	A1TS	POPTR_0001s33030	POPTR_0001s33030 (11)	scaffold_1:31274683-31276240(+) (11)	NA	Q9LW29	Protein AUXIN SIGNALING F-BOX 2	AT3G26810.1	auxin signaling F-box 2 	LOC_Os04g32460.2	"OsFBL16 - F-box domain and LRR containing protein, expressed"	Medtr7g096650.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87935.2.S1_a_at	A	A2TS	POPTR_0001s33030	POPTR_0001s33030 (11)//POPTR_0017s08860 (11)	scaffold_1:31274480-31274810(+) (11)//scaffold_17:7506551-7506881(+) (11)	NA	Q9LW29	Protein AUXIN SIGNALING F-BOX 2	AT3G26810.1	auxin signaling F-box 2 	LOC_Os04g32460.2	"OsFBL16 - F-box domain and LRR containing protein, expressed"	Medtr7g096650.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87960.1.S1_s_at	A	A1TS	POPTR_0005s27920	POPTR_0005s27920 (11)	scaffold_5:25364845-25364939(-) (11)	NA	Q41140	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha	AT1G76550.1	Phosphofructokinase family protein 	LOC_Os02g48360.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed"	Medtr1g039920.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87978.1.S1_s_at	A	A1TS	POPTR_0012s14250	POPTR_0012s14250 (11)	scaffold_12:14226425-14226490(+) (11)	NA	C0LGW6	LRR receptor-like serine/threonine-protein kinase ERL1	AT5G62230.1	ERECTA-like 1 	LOC_Os06g03970.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr1g019670.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.87981.1.S1_at	A	A1TS	POPTR_0009s12190	POPTR_0009s12190 (11)	scaffold_9:9980192-9980228(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT3G50930.1	cytochrome BC1 synthesis 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.87981.1.S1_s_at	A	A2TS	POPTR_0009s12180	POPTR_0009s12190 (11)//POPTR_0009s12180 (11)	scaffold_9:9973689-9974158(+) (11)//scaffold_9:9980132-9980601(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT3G50930.1	cytochrome BC1 synthesis 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.87993.1.S1_a_at	A	A1TS	POPTR_0014s06320	POPTR_0014s06320 (11)	scaffold_14:4808998-4809457(+) (11)	NA	P46637	Arginase	AT4G08900.1	arginase 	LOC_Os04g01590.1	"arginase, putative, expressed"	Medtr4g026300.1	Arginase/agmatinase/formiminoglutamase 	NA	"GO:0016813|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines""||GO:0046872|metal ion binding"	NA
PtpAffx.880.2.S1_at	A	A1MS	POPTR_0012s09570	POPTR_0012s09570 (11)	scaffold_12:10557215-10557765(+) (11)	NA	P26518	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G13440.1	glyceraldehyde-3-phosphate dehydrogenase C2 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.8802.1.S1_a_at	A	A2TS	POPTR_0012s02630	POPTR_0012s02630 (11)//POPTR_0015s01130 (11)	scaffold_12:2145663-2147116(+) (11)//scaffold_15:698393-699806(-) (11)	NA	NA	NA	AT1G21320.2	nucleotide binding;nucleic acid binding 	LOC_Os08g43360.3	"RNA recognition motif containing protein, putative, expressed"	Medtr3g123550.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.88042.1.S1_at	A	A1MS	POPTR_0013s09630	POPTR_0013s09630 (9)	scaffold_13:9456834-9458351(-) (10)	NA	P44644	GTP pyrophosphokinase	AT3G14050.1	RELA/SPOT homolog 2 	LOC_Os02g47120.1	"region found in RelA/SpoT proteins containing protein, expressed"	Medtr5g007970.1	"ATP-dependent DNA ligase; Metal-dependent phosphohydrolase, HD region; TGS "	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.88048.2.S1_a_at	A	A1TS	POPTR_0002s10700	POPTR_0002s10700 (11)	scaffold_2:7767429-7767824(-) (11)	NA	Q9LJM4	Receptor-like protein kinase HAIKU2	AT1G09970.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os12g43640.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.88082.1.A1_at	A	A1TS	POPTR_0002s12840	POPTR_0002s12840 (10)	scaffold_2:9555679-9556122(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88104.1.A1_at	A	A2TS	POPTR_0008s22840	POPTR_0008s22870 (11)//POPTR_0008s22840 (11)	scaffold_8:17706974-17707474(-) (11)//scaffold_8:17763620-17764120(-) (11)	NA	Q8L8Z8	Monothiol glutaredoxin-S2	AT5G18600.1	Thioredoxin superfamily protein 	LOC_Os12g35330.1	OsGrx_C12 - glutaredoxin subgroup III	Medtr2g025040.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.88112.1.S1_a_at	A	A1TS	POPTR_0007s02350	POPTR_0007s02350 (11)	scaffold_7:1385766-1385821(+) (11)	NA	NA	NA	AT2G43235.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g23420.1	"sugar porter, putative, expressed"	Medtr1g146860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88112.2.S1_at	A	A1MS	POPTR_0007s02350	POPTR_0007s02350 (9)	scaffold_7:1384559-1385706(+) (11)	NA	NA	NA	AT2G43235.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g23420.1	"sugar porter, putative, expressed"	Medtr1g146860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88129.1.A1_at	A	A1TS	POPTR_0006s08390	POPTR_0006s08390 (11)	scaffold_6:6111561-6111697(+) (11)	NA	Q94AA1	UNC93-like protein	AT3G09470.2	Major facilitator superfamily protein 	LOC_Os12g37939.1	"unc-93 homolog A, putative, expressed"	Medtr7g118350.1	"Protein of unknown function DUF895, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8815.2.A1_a_at	A	A1TS	POPTR_0017s13110	POPTR_0017s13110 (11)	scaffold_17:13269902-13270584(-) (11)	NA	Q0WML0	ABC transporter B family member 27	AT5G39040.1	transporter associated with antigen processing protein 2 	LOC_Os03g54790.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g107560.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.88166.1.S1_s_at	A	A1TS	POPTR_0004s20100	POPTR_0004s20100 (11)	scaffold_4:19745479-19745987(-) (11)	NA	Q8LPK4	AP-2 complex subunit alpha-2	AT5G22780.1	"Adaptor protein complex AP-2, alpha subunit "	LOC_Os03g02150.1	"adapitin protein, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.88171.1.A1_at	A	A1TS	POPTR_0010s01800	POPTR_0010s01800 (10)	scaffold_10:1976607-1977154(+) (10)	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.88174.1.A1_at	A	A1TS	POPTR_0014s15390	POPTR_0014s15390 (11)	scaffold_14:11464259-11464757(-) (11)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT4G15440.1	hydroperoxide lyase 1 	LOC_Os02g02000.1	"cytochrome P450, putative, expressed"	Medtr2g104500.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88184.1.A1_at	A	A1TS	POPTR_0014s14580	POPTR_0014s14580 (11)	scaffold_14:10664320-10664948(-) (11)	NA	P73530	30S ribosomal protein S1 homolog A	AT3G23700.1	Nucleic acid-binding proteins superfamily 	LOC_Os03g62780.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g104300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.88188.1.S1_a_at	A	A1TS	POPTR_0010s04860	POPTR_0010s04860 (11)	scaffold_10:6044983-6045381(+) (11)	NA	Q869R9	Myb-like protein J	AT1G70000.2	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr5g038100.1	"Zinc finger, CCHC-type; Homeodomain-related "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.8821.1.A1_at	A	A2TS	POPTR_0010s01440	POPTR_0010s01440 (11)//POPTR_0010s01430 (10)	scaffold_10:1557811-1558225(+) (10)//scaffold_10:1582811-1583229(+) (11)	NA	Q6Q2C2	Epoxide hydrolase 2	AT4G15960.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g19150.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138830.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88218.1.A1_at	A	A1TS	POPTR_0019s10130	POPTR_0019s10130 (9)	scaffold_19:11717218-11717599(+) (9)	NA	Q32PX7	Far upstream element-binding protein 1	AT4G10070.1	KH domain-containing protein 	LOC_Os08g01930.1	"KH domain-containing protein, putative, expressed"	Medtr5g008480.2	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.88225.1.S1_at	A	A1MS	POPTR_0008s20950	POPTR_0008s20950 (11)	scaffold_8:14987091-14987512(-) (11)	NA	B9RT03	UPF0497 membrane protein 4	AT4G15610.1	Uncharacterised protein family (UPF0497) 	LOC_Os07g26110.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g139640.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88231.1.A1_at	A	A1TS	POPTR_0002s14460	POPTR_0002s14460 (10)	scaffold_2:10740421-10740552(+) (10)	NA	Q42430	Zinc finger protein 1	AT3G60580.1	C2H2-like zinc finger protein 	LOC_Os10g40660.1	"ZOS10-07 - C2H2 zinc finger protein, expressed"	Medtr8g105670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.88241.1.A1_at	A	A1TS	POPTR_0003s13050	POPTR_0003s13050 (9)	scaffold_3:13461144-13461317(-) (9)	NA	NA	NA	AT5G41380.1	CCT motif family protein 	LOC_Os05g38990.1	"CCT motif family protein, expressed"	Medtr5g010230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88252.1.S1_s_at	A	A1TS	POPTR_0009s06850	POPTR_0009s06850 (11)	scaffold_9:6544278-6544421(-) (11)	NA	Q54HF6	Probable U6 snRNA-associated Sm-like protein LSm7	AT2G03870.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g08040.1	"LSM domain containing protein, expressed"	Medtr7g070870.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88257.1.S1_at	A	A1TS	POPTR_0006s03270	POPTR_0006s03270 (11)	scaffold_6:2081876-2082365(-) (11)	NA	Q9LXX6	Probable exocyst complex component 6	AT3G56640.1	exocyst complex component sec15A 	LOC_Os03g06760.2	"exocyst complex component 6, putative, expressed"	Medtr1g107350.1	Exocyst complex subunit Sec15-like 	GO:0006904|vesicle docking during exocytosis	NA	GO:0000145|exocyst
PtpAffx.88275.1.A1_at	A	A1TS	POPTR_0010s00760	POPTR_0010s00760 (11)	scaffold_10:465332-466203(-) (11)	NA	Q15061	WD repeat-containing protein 43	AT5G11240.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g18840.1	"NUC189 domain containing protein, expressed"	Medtr8g138450.1	"Protein of unknown function NUC189, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.88294.1.A1_at	A	A1TS	POPTR_0005s27270	POPTR_0005s27270 (11)	scaffold_5:24984895-24985140(-) (11)	NA	Q5R7B8	Kelch-like protein 20	AT2G30600.4	BTB/POZ domain-containing protein 	LOC_Os05g27880.2	"BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed"	Medtr5g075660.1	BTB/POZ; Galactose-binding like; ; 	GO:0007155|cell adhesion	GO:0005515|protein binding	NA
PtpAffx.88343.1.S1_at	A	A1TS	POPTR_0004s07690	POPTR_0004s07690 (11)	scaffold_4:6308466-6308800(+) (11)	NA	NA	NA	AT3G02700.1	NC domain-containing protein-related 	LOC_Os05g24560.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88346.1.A1_at	A	A1TS	POPTR_0001s40210	POPTR_0001s40210 (10)	scaffold_1:39572529-39572952(-) (10)	NA	O82768	"Histidine biosynthesis bifunctional protein hisIE, chloroplastic"	AT1G31860.1	histidine biosynthesis bifunctional protein (HISIE) 	LOC_Os01g16940.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	NA	NA	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004635|phosphoribosyl-AMP cyclohydrolase activity||GO:0004636|phosphoribosyl-ATP diphosphatase activity	NA
PtpAffx.88348.1.A1_at	A	A1TS	POPTR_0005s11495	POPTR_0005s11495 (11)	scaffold_5:8305364-8305608(-) (11)	NA	Q04832	DNA-binding protein HEXBP	AT4G36020.1	cold shock domain protein 1 	LOC_Os05g02040.1	"RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.88363.1.A1_at	A	A1TS	POPTR_0005s17290	POPTR_0005s17290 (11)	scaffold_5:14548573-14548963(-) (11)	NA	A2YNT8	Serine/threonine-protein kinase SAPK2	AT1G78290.3	Protein kinase superfamily protein 	LOC_Os07g42940.1	"CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g073720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.88366.1.A1_at	A	A1TS	POPTR_0004s10020	POPTR_0004s10020 (11)	scaffold_4:8550155-8551010(-) (11)	NA	P82412	"30S ribosomal protein 3, chloroplastic"	AT1G68590.1	Ribosomal protein PSRP-3/Ycf65 	LOC_Os04g38750.1	"plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed"	Medtr6g094250.1	Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0009536|plastid||GO:0005840|ribosome
PtpAffx.88369.1.A1_at	A	A1TS	POPTR_0007s05240	POPTR_0007s05240 (11)	scaffold_7:3373488-3373845(-) (11)	NA	Q8DKR7	Chaperone protein dnaJ	AT2G22360.1	DNAJ heat shock family protein 	LOC_Os05g26926.1	"chaperone protein dnaJ, putative, expressed"	Medtr3g101890.1	Chaperone DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.88374.1.A1_at	A	A1TS	POPTR_0015s09070	POPTR_0015s09070 (11)	scaffold_15:10398622-10402363(+) (11)	NA	Q14149	MORC family CW-type zinc finger protein 3	AT1G19100.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os01g36840.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	NA	GO:0005524|ATP binding	NA
PtpAffx.8841.1.A1_at	A	A1TS	POPTR_0016s08140	POPTR_0016s08140 (11)	scaffold_16:5992566-5992925(-) (11)	NA	Q9C8G4	Probable pectate lyase 4	AT3G55140.1	Pectin lyase-like superfamily protein 	LOC_Os01g36620.1	"pectate lyase family protein, expressed"	Medtr8g147150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8841.2.A1_at	A	A1TS	POPTR_0006s23090	POPTR_0006s23090 (9)	scaffold_6:21941017-21941419(-) (9)	NA	Q9C8G4	Probable pectate lyase 4	AT3G55140.1	Pectin lyase-like superfamily protein 	LOC_Os01g36620.1	"pectate lyase family protein, expressed"	Medtr8g147150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88410.1.A1_at	A	A1TS	POPTR_0009s05660	POPTR_0009s05660 (9)	scaffold_9:5718044-5718166(-) (9)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT1G51440.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g32380.1	"phospholipase, putative, expressed"	Medtr4g104700.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.88441.1.A1_at	A	A1TS	POPTR_0017s12890	POPTR_0017s12890 (11)	scaffold_17:13069248-13069755(-) (11)	NA	NA	NA	AT5G39220.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41080.1	"hydrolase, alpha/beta fold family domain containing protein"	Medtr5g047260.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88444.1.A1_at	A	A1TS	POPTR_0015s15380	POPTR_0015s15380 (11)	scaffold_15:14674714-14675160(-) (11)	NA	NA	NA	AT1G31175.1	unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g38010.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88445.1.A1_at	A	A1TS	POPTR_0017s09740	POPTR_0017s09740 (11)	scaffold_17:8376223-8377618(+) (11)	NA	NA	NA	AT5G14105.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g44160.1	expressed protein	Medtr3g008890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88446.1.A1_at	A	A1TS	POPTR_0013s05730	POPTR_0013s05730 (10)	scaffold_13:4115739-4116044(-) (10)	NA	O80622	Expansin-A15	AT2G03090.1	expansin A15 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88450.1.A1_at	A	A1TS	POPTR_0012s05870	POPTR_0012s05870 (11)	scaffold_12:5719678-5720073(-) (11)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT5G61030.1	glycine-rich RNA-binding protein 3 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g036670.1	"Carbohydrate kinase, PfkB; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.88461.1.A1_at	A	A1MS	POPTR_0012s01450	POPTR_0012s01450 (10)	scaffold_12:1062816-1063011(-) (10)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88467.1.A1_at	A	A1TS	POPTR_0016s02450	POPTR_0016s02450 (11)	scaffold_16:1203859-1204381(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88478.1.A1_at	A	A1TS	POPTR_0004s05080	POPTR_0004s05080 (11)	scaffold_4:3809207-3809577(+) (11)	NA	NA	NA	AT5G28010.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	NA	NA	Medtr8g012990.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.88478.1.A1_x_at	A	A1TS	POPTR_0004s05080	POPTR_0004s05080 (11)	scaffold_4:3809207-3809577(+) (11)	NA	NA	NA	AT5G28010.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	NA	NA	Medtr8g012990.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.88488.1.A1_at	A	A1TS	POPTR_0014s15740	POPTR_0014s15740 (11)	scaffold_14:11798607-11799150(-) (11)	NA	P43254	E3 ubiquitin-protein ligase COP1	AT2G32950.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g53140.1	"COP1, putative, expressed"	Medtr5g092630.1	"Zinc finger, RING-type; WD40-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8849.1.S1_at	A	A1TS	POPTR_0002s10910	POPTR_0002s10910 (11)	scaffold_2:7954441-7955107(-) (11)	NA	Q9LSL1	Transcription factor bHLH93	AT5G65640.1	beta HLH protein 93 	LOC_Os03g04310.1	"BHLH transcription factor, putative, expressed"	Medtr3g127590.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.88494.1.A1_at	A	A1TS	POPTR_0016s14740	POPTR_0016s14740 (10)	scaffold_16:13900282-13900722(+) (10)	NA	Q9C9Z1	Putative zinc transporter At3g08650	AT3G08650.2	ZIP metal ion transporter family 	LOC_Os05g25194.2	"metal cation transporter, putative, expressed"	Medtr7g080580.1	Zinc/iron permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88497.2.A1_a_at	A	A1TS	POPTR_0004s05260	POPTR_0004s05260 (11)	scaffold_4:3994707-3999837(+) (11)	NA	O22951	"Nudix hydrolase 22, chloroplastic"	AT2G33980.1	nudix hydrolase homolog 22 	LOC_Os08g28860.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr2g018820.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.88497.3.A1_a_at	A	A1TS	POPTR_0004s05260	POPTR_0004s05260 (11)	scaffold_4:3996251-4001099(+) (11)	NA	O22951	"Nudix hydrolase 22, chloroplastic"	AT2G33980.1	nudix hydrolase homolog 22 	LOC_Os08g28860.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr2g018820.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.885.1.S1_at	A	A1TS	POPTR_0004s04120	POPTR_0004s04120 (11)	scaffold_4:2964069-2964590(+) (11)	NA	NA	NA	AT5G53750.1	CBS domain-containing protein 	LOC_Os10g35630.1	"cystathionin beta synthase protein, putative, expressed"	Medtr2g014790.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8850.1.A1_at	A	A1TS	POPTR_0008s11300	POPTR_0008s11300 (11)	scaffold_8:7155232-7156201(+) (11)	NA	Q6NQI8	LAG1 longevity assurance homolog 3	AT1G13580.3	LAG1 longevity assurance homolog 3 	LOC_Os02g37080.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.88510.1.A1_at	A	A1TS	POPTR_0016s12670	POPTR_0016s12670 (11)	scaffold_16:12043151-12043468(+) (11)	NA	Q8H7F6	"Monothiol glutaredoxin-S16, chloroplastic"	AT2G38270.1	CAX-interacting protein 2 	LOC_Os12g07650.1	"OsGrx_S16 - glutaredoxin subgroup II, expressed"	AC233100_71.1	Glutaredoxin-related protein; Thioredoxin-like fold AC233100.6 316188-320499 F EGN_Mt090430 200	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.88523.1.A1_at	A	A1MS	POPTR_0015s04570	POPTR_0015s04570 (10)	scaffold_15:4745630-4746240(-) (10)	NA	Q5SMQ9	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.88546.1.S1_s_at	A	A2TS	POPTR_0003s00940	POPTR_0004s23680 (11)//POPTR_0003s00940 (11)	scaffold_3:750789-750836(-) (11)//scaffold_4:22316908-22316955(+) (11)	NA	Q96282	Chloride channel protein CLC-c	AT5G49890.1	chloride channel C 	LOC_Os04g36560.2	"chloride channel protein, putative, expressed"	Medtr2g005270.1	"CBS; Cl- channel, voltage gated; Twin-arginine translocation pathway signal "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.88547.1.A1_at	A	A1TS	POPTR_0008s11050	POPTR_0008s11050 (10)	scaffold_8:6963004-6964084(-) (10)	NA	Q9S7I0	"tRNA-specific adenosine deaminase, chloroplastic"	AT1G68720.1	tRNA arginine adenosine deaminase 	LOC_Os06g29430.1	"cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed"	Medtr8g133690.1	"CMP/dCMP deaminase, zinc-binding "	NA	GO:0016787|hydrolase activity||GO:0008270|zinc ion binding	NA
PtpAffx.88550.1.A1_at	A	A1TS	POPTR_0001s42710	POPTR_0001s42710 (11)	scaffold_1:42743268-42743731(-) (11)	NA	O81635	Kinesin-4	AT1G72250.2	Di-glucose binding protein with Kinesin motor domain 	LOC_Os12g42160.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g077260.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.88561.1.A1_at	A	A1TS	POPTR_0015s12160	POPTR_0015s12160 (11)	scaffold_15:12553145-12553615(+) (11)	NA	Q9FDW0	Protein FRIGIDA	AT4G00650.1	FRIGIDA-like protein 	LOC_Os03g63440.1	"frigida, putative, expressed"	Medtr3g151640.1	Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88561.2.A1_s_at	A	A1TS	POPTR_0001s02840	POPTR_0001s02840 (11)	scaffold_1:2255012-2256460(+) (11)	NA	NA	NA	AT1G32370.2	tobamovirus multiplication 2B 	LOC_Os02g17850.1	"TOM2B, putative, expressed"	Medtr2g082950.1	"TOM2B, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8857.3.S1_at	A	A1TS	POPTR_0011s15060	POPTR_0011s15060 (11)	scaffold_11:17246636-17247361(-) (11)	NA	A0PK00	Transmembrane protein 120B	AT4G10430.3	TMPIT-like protein 	LOC_Os02g01720.1	"transmembrane protein 120A, putative, expressed"	Medtr1g146830.1	TMPIT-like 	NA	NA	GO:0016021|integral to membrane
PtpAffx.88572.1.A1_at	A	A1TS	POPTR_0006s26050	POPTR_0006s26050 (11)	scaffold_6:24363767-24364176(+) (11)	NA	NA	NA	AT5G25590.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g32760.1	"BZIP protein, putative, expressed"	Medtr3g132720.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88583.1.A1_at	A	A1MS	POPTR_0007s12260	POPTR_0007s12260 (9)	scaffold_7:12578875-12579144(+) (9)	NA	Q12010	Uncharacterized membrane protein YOL092W	AT4G36850.1	PQ-loop repeat family protein / transmembrane family protein 	LOC_Os01g16170.5	"PQ loop repeat domain containing protein, expressed"	Medtr5g019090.1	Cystinosin/ERS1p repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88606.1.A1_at	A	A1TS	POPTR_0007s08070	POPTR_0007s08070 (11)	scaffold_7:6556549-6557166(-) (11)	NA	Q8GY84	DEAD-box ATP-dependent RNA helicase 10	AT5G60990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g46610.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC146793_9.1	"Helicase, C-terminal; ; AC146793.7 47553-38999 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.8861.1.S1_s_at	A	A1TS	POPTR_0006s05300	POPTR_0006s05300 (11)	scaffold_6:3747847-3748138(+) (11)	NA	NA	NA	AT3G52105.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g07870.1	expressed protein	Medtr7g110850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88629.1.A1_at	A	A1TS	POPTR_0009s16840	POPTR_0009s16840 (10)	scaffold_9:12713832-12715316(-) (10)	NA	O15118	Niemann-Pick C1 protein	AT4G38350.1	Patched family protein 	LOC_Os04g47590.1	"niemann-Pick C1 protein precursor, putative, expressed"	Medtr5g106700.1	Sterol-sensing 5TM box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88663.1.A1_at	A	A1TS	POPTR_0011s15050	POPTR_0011s15050 (11)	scaffold_11:17234232-17234734(+) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G33240.1	GT-2-like 1 	LOC_Os03g02240.1	"AT-GTL1, putative, expressed"	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88675.1.A1_at	A	A1MS	POPTR_0001s21090	POPTR_0001s21090 (11)	scaffold_1:19437654-19437884(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT3G15890.1	Protein kinase superfamily protein 	LOC_Os02g09359.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g126640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.88687.1.A1_at	A	A1MS	POPTR_0009s06980	POPTR_0009s06980 (11)	scaffold_9:6639945-6640449(+) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT3G52140.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g48620.2	"tetratricopeptide repeat, putative, expressed"	Medtr3g030760.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88702.1.A1_at	A	A1TS	POPTR_0016s02360	POPTR_0016s02360 (11)	scaffold_16:1164315-1164424(+) (11)	NA	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.88707.1.A1_at	A	A1TA	POPTR_0001s08990	POPTR_0001s08990 (10)	scaffold_1:6877698-6877821(+) (10)	NA	Q9T0D3	Heat stress transcription factor B-2b	AT4G11660.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os08g43334.2	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g010870.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.88710.1.A1_at	A	A1TS	POPTR_0001s13130	POPTR_0001s13130 (10)	scaffold_1:10215600-10217199(+) (10)	NA	NA	NA	AT1G28100.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os10g35644.1	expressed protein	AC235677_28.1	hypothetical protein AC235677.1 126634-128282 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88716.1.A1_at	A	A1TS	POPTR_0014s07040	POPTR_0014s07040 (9)	scaffold_14:5314640-5314854(-) (9)	NA	Q8VYD9	"CRS2-associated factor 1, mitochondrial"	AT4G31010.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os08g07790.1	"CRS2-associated factor 2, mitochondrial precursor, putative, expressed"	Medtr7g083490.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.88732.1.A1_at	A	A1MS	POPTR_0001s28540	POPTR_0001s28540 (10)	scaffold_1:27341656-27341951(+) (10)	NA	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
PtpAffx.8875.1.A1_a_at	A	A1TS	POPTR_0005s26040	POPTR_0005s26040 (11)	scaffold_5:24180691-24181293(-) (11)	NA	Q93X17	Snakin-2	AT1G75750.2	GAST1 protein homolog 1 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr1g031160.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8875.1.A1_at	A	A1TS	POPTR_0005s26040	POPTR_0005s26040 (11)	scaffold_5:24180531-24181332(-) (11)	NA	Q93X17	Snakin-2	AT1G75750.2	GAST1 protein homolog 1 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr1g031160.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88752.1.A1_at	A	A1TS	POPTR_0013s04450	POPTR_0013s04450 (11)	scaffold_13:3051600-3051730(+) (11)	NA	Q06190	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha	AT5G28900.1	Calcium-binding EF-hand family protein 	LOC_Os10g33680.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed"	Medtr1g093540.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88761.1.A1_s_at	A	A2TS	POPTR_0006s19110	POPTR_0018s10810 (11)//POPTR_0006s19110 (11)	scaffold_18:11675528-11675972(-) (11)//scaffold_6:17996758-17997204(-) (11)	NA	NA	NA	AT4G30410.1	sequence-specific DNA binding transcription factors 	LOC_Os06g44320.1	expressed protein	Medtr8g127630.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88766.1.A1_at	A	A1TS	POPTR_0001s03560	POPTR_0001s03560 (11)	scaffold_1:2850266-2850790(-) (11)	NA	NA	NA	AT1G73060.1	Low  PSII Accumulation 3 	LOC_Os02g02520.1	expressed protein	Medtr4g021740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88778.1.A1_at	A	A1TS	POPTR_0001s32150	POPTR_0001s32150 (11)	scaffold_1:30557463-30559235(+) (11)	NA	Q99460	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88783.1.A1_at	A	A1TA	POPTR_0008s19640	POPTR_0008s19640 (11)	scaffold_8:13529313-13529788(+) (11)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT1G27210.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88794.1.A1_at	A	A1TS	POPTR_0006s24150	POPTR_0006s24150 (11)	scaffold_6:22815630-22815775(-) (11)	NA	Q5NVK5	Geranylgeranyl transferase type-2 subunit alpha	AT4G24490.2	RAB geranylgeranyl transferase alpha subunit 1 	LOC_Os06g46380.1	"rab geranylgeranyl transferase like protein, putative, expressed"	Medtr3g149650.1	Protein prenyltransferase 	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity||GO:0005515|protein binding	NA
PtpAffx.8880.1.S1_at	A	A1TS	POPTR_0010s23440	POPTR_0010s23440 (11)	scaffold_10:20022770-20023311(-) (11)	NA	P32826	Serine carboxypeptidase-like 49	AT3G10410.1	SERINE CARBOXYPEPTIDASE-LIKE 49 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g068630.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.88807.1.A1_at	A	A1TS	POPTR_0008s04420	POPTR_0008s04420 (10)	scaffold_8:2482974-2483495(-) (11)	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT5G02950.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g38810.1	"PWWP domain containing protein, expressed"	Medtr1g086970.1	PWWP; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88808.1.A1_at	A	A1TS	POPTR_0014s10510	POPTR_0014s10510 (11)	scaffold_14:7833951-7834459(+) (11)	NA	Q9BQ70	Transcription factor 25	AT2G46900.1	"CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink). "	LOC_Os09g33970.1	expressed protein	AC233662_22.1	Protein of unknown function DUF654 AC233662.1 96596-103118 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88826.1.A1_at	A	A1TS	POPTR_0001s28260	POPTR_0001s28260 (11)	scaffold_1:27045653-27046196(-) (11)	NA	NA	NA	AT5G12300.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g72420.1	"C2 domain containing protein, putative, expressed"	Medtr5g096760.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88847.1.A1_s_at	A	A1TS	POPTR_0005s18580	POPTR_0005s18580 (11)	scaffold_5:16814538-16814665(-) (11)	NA	Q5XIT1	Microtubule-associated protein RP/EB family member 3	AT5G67270.1	end binding protein 1C 	LOC_Os10g35580.1	"ATEB1A-like microtubule associated protein, putative, expressed"	Medtr5g016450.1	Calponin-like actin-binding; EB1 	NA	GO:0008017|microtubule binding	NA
PtpAffx.88853.1.A1_at	A	A1TS	POPTR_0013s08240	POPTR_0013s08240 (11)	scaffold_13:7291333-7291404(+) (11)	NA	Q9CYI4	Putative RNA-binding protein Luc7-like 1	AT3G03340.1	LUC7 related protein 	LOC_Os03g62640.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8886.1.S1_s_at	A	A1TS	POPTR_0011s13920	POPTR_0011s13920 (11)	scaffold_11:16544221-16545238(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.88869.1.A1_at	A	A1TS	POPTR_0015s01270	POPTR_0015s01270 (11)	scaffold_15:799709-800196(+) (11)	NA	P70168	Importin subunit beta-1	AT5G53480.1	ARM repeat superfamily protein 	LOC_Os12g38110.1	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.889.1.A1_a_at	A	A1TS	POPTR_0009s09250	POPTR_0009s09250 (11)	scaffold_9:8255791-8256260(+) (11)	NA	Q42430	Zinc finger protein 1	AT1G27730.1	salt tolerance zinc finger 	LOC_Os12g39400.1	"ZOS12-09 - C2H2 zinc finger protein, expressed"	Medtr1g023440.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.88903.1.A1_at	A	A1TS	POPTR_0009s09220	POPTR_0009s09220 (10)	scaffold_9:8233526-8233559(-) (10)	NA	Q9N4Y9	Zinc finger protein-like 1 homolog	AT2G14835.2	RING/U-box superfamily protein 	LOC_Os10g20600.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g135130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8891.1.A1_a_at	A	A1TS	POPTR_0012s11830	POPTR_0012s11830 (11)	scaffold_12:12205142-12205680(-) (11)	NA	O65751	40S ribosomal protein SA	AT3G04770.2	40s ribosomal protein SA B 	LOC_Os07g42450.1	"ribosomal protein S2, putative, expressed"	AC235488_10.1	"Ribosomal protein S2, eukaryotic and archaeal form AC235488.1 35915-38592 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.8891.2.A1_s_at	A	A1TS	POPTR_0015s12460	POPTR_0015s12460 (11)	scaffold_15:12701493-12701992(-) (11)	NA	Q9ZSR8	40S ribosomal protein SA	AT1G72370.2	40s ribosomal protein SA 	LOC_Os03g08440.1	"ribosomal protein S2, putative, expressed"	AC235488_10.1	"Ribosomal protein S2, eukaryotic and archaeal form AC235488.1 35915-38592 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.8891.3.S1_s_at	A	A1TS	POPTR_0004s11700	POPTR_0004s11700 (11)	scaffold_4:10544798-10545438(+) (11)	NA	Q8RU27	"Alpha-1,4-glucan-protein synthase [UDP-forming] 2"	AT5G15650.1	reversibly glycosylated polypeptide 2 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
PtpAffx.88920.1.A1_at	A	A1TS	POPTR_0010s23620	POPTR_0010s23620 (11)	scaffold_10:20157964-20158531(-) (11)	NA	P36862	GTP-binding protein yptV3	AT5G03530.1	RAB GTPase homolog C2A 	LOC_Os03g05280.1	"ras-related protein, putative, expressed"	Medtr3g143270.1	"Ras GTPase; Sigma-54 factor, interaction region; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.88927.1.A1_at	A	A1TS	POPTR_0001s09340	POPTR_0001s09340 (11)	scaffold_1:7126920-7128428(-) (11)	NA	O22493	"Glutamate--cysteine ligase, chloroplastic"	AT4G23100.3	glutamate-cysteine ligase 	LOC_Os05g03820.3	"glutamate--cysteine ligase, chloroplast precursor, putative, expressed"	Medtr4g149470.1	"Glutamate--cysteine ligase, plant "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process	GO:0004357|glutamate-cysteine ligase activity	NA
PtpAffx.88928.1.A1_at	A	A1TS	POPTR_0004s04020	POPTR_0004s04020 (11)	scaffold_4:2862827-2863329(+) (11)	NA	NA	NA	AT2G20760.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	AC233659_11.2	Clathrin light chain AC233659.1 45746-42471 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88948.1.S1_s_at	A	A1TS	POPTR_0001s17560	POPTR_0001s17560 (11)	scaffold_1:14342243-14342578(+) (11)	NA	NA	NA	AT1G52780.1	Protein of unknown function (DUF2921) 	LOC_Os01g08170.1	expressed protein	Medtr2g017240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8895.1.S1_at	A	A1TS	POPTR_0007s11360	POPTR_0007s11360 (11)	scaffold_7:11713777-11714343(+) (11)	POPTR_0007s11370 (6)	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.88956.1.A1_at	A	A1TS	POPTR_0010s12910	POPTR_0010s12910 (9)	scaffold_10:12838465-12838886(-) (9)	NA	O60113	Uncharacterized amino-acid permease C15C4.04c	AT2G01170.1	bidirectional amino acid transporter 1 	LOC_Os01g42234.2	"amino acid permease family protein, putative, expressed"	AC235665_40.1	Amino acid/polyamine transporter I AC235665.2 219297-222930 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88961.1.A1_at	A	A1TS	POPTR_0002s22470	POPTR_0002s22470 (11)	scaffold_2:19211395-19211942(-) (11)	NA	NA	NA	AT4G02920.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g05140.1	expressed protein	Medtr1g111640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88966.1.A1_a_at	A	A1TS	POPTR_0003s14500	POPTR_0003s14500 (11)	scaffold_3:14580355-14580663(+) (11)	NA	Q2TBW5	Zinc finger HIT domain-containing protein 2	AT5G63830.1	HIT-type Zinc finger family protein 	LOC_Os10g37640.1	"HIT zinc finger domain containing protein, expressed"	AC233676_7.1	hypothetical protein AC233676.2 28874-25760 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88983.1.A1_a_at	A	A1TS	POPTR_0003s03050	POPTR_0003s03050 (11)	scaffold_3:3381647-3381693(+) (11)	NA	NA	NA	AT1G55140.1	Ribonuclease III family protein 	LOC_Os11g13420.3	"RNA binding protein, putative, expressed"	Medtr2g121420.1	Ribonuclease III 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88983.1.A1_at	A	A1MS	POPTR_0003s03050	POPTR_0003s03050 (9)	scaffold_3:3381757-3382072(+) (9)	NA	NA	NA	AT1G55140.1	Ribonuclease III family protein 	LOC_Os11g13420.3	"RNA binding protein, putative, expressed"	Medtr2g121420.1	Ribonuclease III 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88987.1.A1_s_at	A	A2TS	POPTR_0017s14210	POPTR_0017s14210 (11)//POPTR_0824s00200 (11)	scaffold_17:14354592-14355044(-) (11)//scaffold_824:3357-3809(+) (11)	NA	NA	NA	AT1G67170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). 	LOC_Os02g09890.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g121450.1	"Protein kinase PKN/PRK1, effector, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88991.1.A1_at	A	A1TS	POPTR_0006s14780	POPTR_0006s14780 (9)	scaffold_6:12157689-12158170(+) (9)	NA	O94673	Uncharacterized membrane protein C776.05	AT5G35460.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g40280.1	"integral membrane protein, putative, expressed"	Medtr2g046410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89007.1.A1_s_at	A	A1TS	POPTR_0009s12830	POPTR_0009s12830 (11)	scaffold_9:10404036-10404245(+) (11)	NA	Q6S4P4	Transcription factor RF2b	AT4G38900.3	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g03550.1	"bZIP family transcription factor, putative, expressed"	Medtr4g097530.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.89016.1.A1_s_at	A	A1TS	POPTR_0017s06640	POPTR_0017s06640 (11)	scaffold_17:5049010-5049768(+) (11)	NA	Q869L3	Midasin	AT1G67120.1	ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding 	LOC_Os10g31864.1	conserved hypothetical protein	Medtr8g021940.1	Aldo/keto reductase; AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.89020.1.A1_at	A	A1TS	POPTR_0018s00980	POPTR_0018s00980 (9)	scaffold_18:907008-907526(+) (9)	NA	NA	NA	AT5G11460.1	Protein of unknown function (DUF581) 	LOC_Os01g08520.1	"DUF581 domain containing protein, expressed"	Medtr3g135880.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89021.1.A1_at	A	A1TS	POPTR_0006s07550	POPTR_0006s07550 (11)	scaffold_6:5474185-5475250(+) (11)	NA	NA	NA	AT4G29960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51780.1	expressed protein	Medtr2g042660.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89023.1.A1_at	A	A1TS	POPTR_0001s09640	POPTR_0001s09640 (11)	scaffold_1:7343835-7344320(-) (11)	NA	NA	NA	AT1G75060.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g08450.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89023.2.S1_at	A	A1MS	POPTR_0018s09830	POPTR_0018s09830 (9)	scaffold_1:21226600-21226873(-) (9)//scaffold_1:37471294-37471567(-) (10)//scaffold_11:8448609-8448882(+) (10)//scaffold_18:2571253-2571526(-) (10)//scaffold_18:10892697-10892969(-) (9)//scaffold_3:13622602-13622875(-) (10)//scaffold_3:18865282-18865555(-) (10)//scaffold_396:5618-5891(-) (10)//scaffold_4:15669527-15669800(-) (9)//scaffold_4:19732012-19732285(-) (10)//scaffold_6:5409681-5409954(+) (10)	NA	Q9FID5	Probable receptor-like protein kinase At5g39030	AT5G38280.1	PR5-like receptor kinase 	LOC_Os04g56110.1	"protein kinase, putative, expressed"	Medtr2g041340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.89026.1.A1_at	A	A1TS	POPTR_0006s26500	POPTR_0006s26500 (11)	scaffold_6:24712808-24713807(+) (11)	NA	Q6GP53	"N-alpha-acetyltransferase 50, NatE catalytic subunit"	AT5G11340.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os01g42470.2	"acetyltransferase, GNAT family, putative, expressed"	Medtr5g106430.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.89035.1.A1_at	A	A1TS	POPTR_0001s20770	POPTR_0001s20770 (11)	scaffold_1:18931597-18932522(-) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89048.1.A1_at	A	A1TS	POPTR_0004s14310	POPTR_0004s14310 (11)	scaffold_4:14755959-14756452(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.89051.1.A1_at	A	A1TS	POPTR_0016s11090	POPTR_0016s11090 (11)	scaffold_16:9692747-9693624(-) (11)	NA	Q9M354	Probable ADP-ribosylation factor GTPase-activating protein AGD6	AT3G53710.2	ARF-GAP domain 6 	LOC_Os03g17020.2	"GTPase-activating protein, putative, expressed"	Medtr7g118270.1	Arf GTPase activating protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89053.1.A1_at	A	A1TS	POPTR_0012s02160	POPTR_0012s02160 (11)	scaffold_12:1792290-1792786(+) (11)	NA	Q8GXC7	F-box/kelch-repeat protein At3g06240	AT3G06240.1	F-box family protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr5g105060.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89060.1.S1_a_at	A	A2TS	POPTR_0009s03540	POPTR_0009s03540 (11)//POPTR_0001s24580 (9)	scaffold_1:23833057-23833399(-) (9)//scaffold_9:4164419-4164761(-) (11)	NA	NA	NA	AT5G02440.1	unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g62360.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89068.1.A1_at	A	A1TS	POPTR_0004s05780	POPTR_0004s05780 (11)	scaffold_4:4538343-4539436(+) (11)	NA	C0LGU5	Probable LRR receptor-like serine/threonine-protein kinase At5g45780	AT5G45780.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g14120.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.89072.1.A1_at	A	A1TS	POPTR_0006s13060	POPTR_0006s13060 (11)	scaffold_6:10283825-10284869(+) (11)	NA	O60291	E3 ubiquitin-protein ligase MGRN1	AT3G09770.1	RING/U-box superfamily protein 	LOC_Os03g15000.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89095.1.A1_at	A	A1TS	POPTR_0018s00980	POPTR_0018s00980 (11)	scaffold_18:906386-906856(+) (11)	NA	NA	NA	AT5G11460.1	Protein of unknown function (DUF581) 	LOC_Os01g08520.1	"DUF581 domain containing protein, expressed"	Medtr3g135880.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.891.1.S1_x_at	A	A1TS	POPTR_0001s27960	POPTR_0001s27960 (10)	scaffold_1:26785741-26795464(+) (11)	POPTR_0001s27950 (6)	P18025	Tubulin beta-1 chain	AT5G62700.1	tubulin beta chain 3 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.891.14.S1_a_at	A	A1TS	POPTR_0004s07670	POPTR_0004s07670 (11)	scaffold_4:6293423-6293461(-) (11)	NA	NA	NA	AT1G65720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g34270.1	expressed protein	Medtr3g086200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.891.14.S1_at	A	A2TA	POPTR_0009s07150	POPTR_1455s00200 (9)//POPTR_0009s07150 (9)	scaffold_1455:39-202(+) (9)//scaffold_9:6758589-6758749(-) (9)	NA	Q43594	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.891.3.S1_a_at	A	A1TS	POPTR_0001s27950	POPTR_0001s27950 (11)	scaffold_1:26786078-26786120(+) (11)	NA	Q9ZPN9	Tubulin beta-2 chain	AT5G23860.2	tubulin beta 8 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.891.8.S1_at	A	A1MS	POPTR_0017s01760	POPTR_0017s01760 (11)	scaffold_17:1277855-1277921(+) (11)	NA	NA	NA	AT1G65720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g34270.1	expressed protein	Medtr3g086200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8910.1.S1_a_at	A	A2TS	POPTR_0008s08960	POPTR_0008s08960 (11)//POPTR_0010s17240 (11)	scaffold_10:15909283-15910451(-) (11)//scaffold_8:5558574-5559800(+) (11)	NA	NA	NA	AT1G26740.1	Ribosomal L32p protein family 	LOC_Os03g07290.1	"structural constituent of ribosome, putative, expressed"	Medtr1g031260.1	Ribosomal L32p protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0015934|large ribosomal subunit
PtpAffx.8910.1.S1_at	A	A1TS	POPTR_0008s08960	POPTR_0008s08960 (10)	scaffold_8:5558368-5560407(+) (10)	NA	NA	NA	AT1G26740.1	Ribosomal L32p protein family 	LOC_Os03g07290.1	"structural constituent of ribosome, putative, expressed"	Medtr1g031260.1	Ribosomal L32p protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0015934|large ribosomal subunit
PtpAffx.8910.2.S1_at	A	A1TS	POPTR_0010s17240	POPTR_0010s17240 (10)	scaffold_10:15908575-15910606(-) (10)	NA	NA	NA	AT1G26740.1	Ribosomal L32p protein family 	LOC_Os10g26690.1	"structural constituent of ribosome, putative, expressed"	Medtr1g031260.1	Ribosomal L32p protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0015934|large ribosomal subunit
PtpAffx.89109.1.A1_at	A	A1TS	POPTR_0009s01730	POPTR_0009s01730 (11)	scaffold_9:2256502-2256674(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g47780.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89111.1.A1_at	A	A1TS	POPTR_0018s05130	POPTR_0018s05130 (10)	scaffold_18:4580265-4580746(-) (10)	NA	Q9H0R3	Transmembrane protein 222	AT2G26070.1	Protein of unknown function (DUF778) 	LOC_Os01g51430.1	"green ripe-like, putative, expressed"	Medtr1g020540.1	Protein of unknown function DUF778 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89113.1.A1_at	A	A1TS	POPTR_0001s01790	POPTR_0001s01790 (11)	scaffold_1:1303006-1304456(-) (11)	NA	Q9UT88	Probable phosphomevalonate kinase	AT1G31910.1	GHMP kinase family protein 	LOC_Os03g14830.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr3g124290.1	Phosphomevalonate kinase Erg8; GHMP kinase; ; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.89114.1.A1_at	A	A1TS	POPTR_0009s04960	POPTR_0009s04960 (11)	scaffold_9:5186856-5188696(+) (11)	NA	O81643	Villin-1	AT2G29890.1	villin-like 1 	LOC_Os06g44890.1	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
PtpAffx.89130.1.A1_at	A	A1TS	POPTR_0014s05330	POPTR_0014s05330 (10)	scaffold_14:4021474-4021965(+) (10)	NA	NA	NA	AT3G60480.1	unknown protein; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89140.1.A1_at	A	A1MS	POPTR_0001s32750	POPTR_0001s32750 (11)	scaffold_1:31028714-31029283(-) (11)	NA	Q84LH3	Werner Syndrome-like exonuclease	AT4G13870.2	Werner syndrome-like exonuclease 	LOC_Os04g03990.1	"3-5 exonuclease domain-containing protein, putative, expressed"	Medtr3g104890.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89145.1.A1_at	A	A1TS	POPTR_0008s05950	POPTR_0008s05950 (11)	scaffold_8:3509830-3509978(+) (11)	NA	P49598	Protein phosphatase 2C 37	AT3G11410.1	protein phosphatase 2CA 	LOC_Os01g62760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89146.1.A1_at	A	A1MS	POPTR_0016s01760	POPTR_0016s01760 (10)	scaffold_16:803570-804034(+) (10)	NA	Q9LIE7	"Pentatricopeptide repeat-containing protein At3g22150, chloroplastic"	AT3G22150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g51350.1	"pentatricopeptide, putative, expressed"	Medtr5g106500.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8917.1.S1_at	A	A1MA	POPTR_0012s02850	POPTR_0012s02850 (10)	scaffold_12:2313864-2314262(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89171.1.A1_a_at	A	A1MS	POPTR_0002s08620	POPTR_0002s08620 (11)	scaffold_2:6034685-6034967(+) (11)	NA	Q6NRL0	PrdX-deacylase domain-containing protein 1	AT1G44835.2	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g52880.2	"ybaK/prolyl-tRNA synthetase family protein, putative, expressed"	Medtr3g097700.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89172.1.A1_s_at	A	A1TS	POPTR_0004s02340	POPTR_0004s02340 (10)	scaffold_138:28961-28995(+) (10)//scaffold_314:7536-7570(-) (10)//scaffold_314:42686-42720(-) (10)//scaffold_4:1451936-1451970(+) (10)//scaffold_4:1478158-1478192(+) (10)	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os05g41370.1	"TKL_IRAK_DUF26-la.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.89175.1.A1_at	A	A1TS	POPTR_0019s04750	POPTR_0019s04750 (11)	scaffold_19:4957448-4957507(+) (11)	NA	O64654	"Thioredoxin-like 1-1, chloroplastic"	AT1G08570.1	atypical CYS  HIS rich thioredoxin 4 	LOC_Os03g21000.1	"thioredoxin, putative, expressed"	Medtr7g100190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.89175.1.A1_s_at	A	A1TS	POPTR_0019s04750	POPTR_0019s04750 (11)	scaffold_19:4957230-4957667(+) (11)	NA	O64654	"Thioredoxin-like 1-1, chloroplastic"	AT1G08570.1	atypical CYS  HIS rich thioredoxin 4 	LOC_Os03g21000.1	"thioredoxin, putative, expressed"	Medtr7g100190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.89177.1.A1_s_at	A	A1TS	POPTR_0014s01610	POPTR_0014s01610 (11)	scaffold_14:1510361-1510683(+) (11)	NA	NA	NA	AT1G59590.1	ZCF37 	LOC_Os03g31740.1	"ZCF37, putative, expressed"	Medtr1g023050.1	"ZCF37, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89190.1.A1_at	A	A1TS	POPTR_0003s10830	POPTR_0003s10830 (11)	scaffold_3:11699501-11700034(-) (11)	NA	Q7XU74	Peroxisomal membrane protein 11-4	AT3G47430.1	peroxin 11B 	LOC_Os04g45210.1	"peroxisomal biogenesis factor 11, putative, expressed"	Medtr7g083810.1	Peroxisomal biogenesis factor 11 	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
PtpAffx.89205.1.A1_at	A	A1TS	POPTR_0005s26420	POPTR_0005s26420 (11)	scaffold_5:24457661-24457749(+) (11)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G20110.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g50840.1	"zinc finger family protein, putative, expressed"	Medtr3g156570.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89215.1.A1_at	A	A1MS	POPTR_0005s08240	POPTR_0005s08240 (11)	scaffold_5:5680330-5680773(+) (11)	NA	Q9NQG5	Regulation of nuclear pre-mRNA domain-containing protein 1B	AT5G65180.1	ENTH/VHS family protein 	LOC_Os04g54420.1	"protein of unknown function, DUF618 domain containing protein, expressed"	Medtr3g101010.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89229.1.S1_at	A	A1MS	POPTR_0019s05060	POPTR_0019s05060 (9)	scaffold_19:5307106-5307553(+) (9)	NA	NA	NA	AT5G18150.1	Methyltransferase-related protein 	LOC_Os11g02200.1	expressed protein	Medtr6g030950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89235.1.A1_at	A	A1TS	POPTR_0002s17740	POPTR_0002s17740 (11)	scaffold_2:13567814-13568204(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT2G46710.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os02g45600.1	"rhoGAP domain containing protein, expressed"	Medtr8g029150.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.89237.1.A1_at	A	A1TS	POPTR_0005s20290	POPTR_0005s20290 (9)	scaffold_5:19337760-19338377(-) (10)	NA	O15527	N-glycosylase/DNA lyase	AT1G21710.1	8-oxoguanine-DNA glycosylase 1 	LOC_Os02g34750.2	"leucine-rich repeat receptor-like protein kinase 1, putative, expressed"	Medtr3g100560.1	"N-glycosylase/DNA lyase, related "	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008534|oxidized purine base lesion DNA N-glycosylase activity||GO:0003684|damaged DNA binding	NA
PtpAffx.8924.1.S1_a_at	A	A2TS	POPTR_0006s27670	POPTR_0018s02260 (11)//POPTR_0006s27670 (11)	scaffold_18:2014482-2014720(-) (11)//scaffold_6:25522078-25522294(-) (11)	NA	P51425	60S ribosomal protein L39	AT4G31985.1	Ribosomal protein L39 family protein 	LOC_Os02g55370.1	"60S ribosomal protein L39, putative, expressed"	Medtr3g137960.1	Ribosomal protein L39e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.8924.1.S1_at	A	A1TS	POPTR_0018s02260	POPTR_0018s02260 (11)	scaffold_18:2014262-2014880(-) (11)	NA	P51425	60S ribosomal protein L39	AT4G31985.1	Ribosomal protein L39 family protein 	LOC_Os02g55370.1	"60S ribosomal protein L39, putative, expressed"	Medtr3g137960.1	Ribosomal protein L39e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.89262.2.S1_a_at	A	A1TS	POPTR_0010s00930	POPTR_0010s00930 (11)	scaffold_10:656908-657293(-) (11)	NA	Q9LKA5	"Uncharacterized protein At3g15000, mitochondrial"	AT3G06790.2	"plastid developmental protein DAG, putative "	LOC_Os03g38490.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g011060.1	"DAG protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89274.1.A1_at	A	A1TS	POPTR_0018s02170	POPTR_0018s02170 (10)	scaffold_18:1923821-1924402(-) (11)	NA	Q8IRW8	Histone-lysine N-methyltransferase trr	AT4G27910.1	SET domain protein 16 	LOC_Os09g38440.1	"ATXR, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89282.1.A1_at	A	A1TS	POPTR_0002s07170	POPTR_0002s07170 (11)	scaffold_2:4901279-4901677(+) (11)	NA	C0LGV1	LRR receptor-like serine/threonine-protein kinase RCH1	AT5G48940.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os04g04330.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g124960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.8929.1.A1_s_at	A	A1TS	POPTR_0006s10360	POPTR_0006s10360 (11)	scaffold_6:7768092-7768572(+) (11)	NA	Q9LFG2	"Diaminopimelate epimerase, chloroplastic"	AT3G53580.1	diaminopimelate epimerase family protein 	LOC_Os12g37960.2	"diaminopimelate epimerase, chloroplast precursor, putative, expressed"	Medtr7g077770.1	Diaminopimelate epimerase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009089|lysine biosynthetic process via diaminopimelate	GO:0008837|diaminopimelate epimerase activity	GO:0005737|cytoplasm
PtpAffx.8929.2.A1_a_at	A	A1TS	POPTR_0016s12850	POPTR_0016s12850 (11)	scaffold_16:12213578-12213857(+) (11)	NA	Q9LFG2	"Diaminopimelate epimerase, chloroplastic"	AT3G53580.1	diaminopimelate epimerase family protein 	LOC_Os12g37960.2	"diaminopimelate epimerase, chloroplast precursor, putative, expressed"	Medtr7g077770.1	Diaminopimelate epimerase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009089|lysine biosynthetic process via diaminopimelate	GO:0008837|diaminopimelate epimerase activity	GO:0005737|cytoplasm
PtpAffx.89295.1.A1_s_at	A	A1TS	POPTR_0005s16940	POPTR_0005s16940 (11)	scaffold_5:13939213-13939486(+) (11)	NA	NA	NA	AT1G78110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). 	LOC_Os02g51720.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89298.1.A1_at	A	A2TS	POPTR_0520s00210	POPTR_0520s00210 (11)//POPTR_0012s04300 (10)	scaffold_12:3520092-3520518(-) (11)//scaffold_520:3256-3682(+) (11)	NA	Q6DR24	Uncharacterized protein At3g17950	AT3G17950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g14530.1	expressed protein	Medtr6g083290.1	"Uncharacterized protein At3g17950, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89302.2.S1_at	A	A1MS	POPTR_0001s15640	POPTR_0001s15640 (11)	scaffold_1:12477340-12477974(-) (11)	NA	NA	NA	AT4G16695.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 21 Blast hits to 21 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g105560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89303.1.A1_at	A	A1TS	POPTR_0008s14790	POPTR_0008s14790 (11)	scaffold_8:9823026-9823401(-) (11)	NA	P10244	Myb-related protein B	AT1G14350.2	Duplicated homeodomain-like superfamily protein 	LOC_Os07g43420.1	"MYB family transcription factor, putative, expressed"	Medtr5g039940.2	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89304.1.A1_at	A	A1TS	POPTR_0006s03040	POPTR_0006s03040 (11)	scaffold_6:1925749-1925956(+) (11)	NA	Q62383	Transcription elongation factor SPT6	AT1G65440.2	global transcription factor group B1 	LOC_Os05g41510.1	"SH2 motif, putative, expressed"	Medtr7g105590.1	"Alcohol dehydrogenase, zinc-containing; RNA binding S1; Resolvase, RNase H-like fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89305.1.A1_a_at	A	A1TS	POPTR_0016s08080	POPTR_0016s08080 (11)	scaffold_16:5917651-5917836(+) (11)	NA	P51566	Serine/threonine-protein kinase AFC1	AT3G53570.4	FUS3-complementing gene 1 	LOC_Os01g62080.2	"serine/threonine-protein kinase AFC1, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.89305.2.A1_at	A	A1MS	POPTR_0002s00440	POPTR_0002s00440 (10)	scaffold_2:161162-161474(-) (10)	NA	Q8RY95	Squamosa promoter-binding-like protein 14	AT1G20980.1	squamosa promoter binding protein-like 14 	LOC_Os08g40260.1	"OsSPL15 - SBP-box gene family member, expressed"	Medtr1g039740.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.89308.1.A1_at	A	A1TS	POPTR_0014s09240	POPTR_0014s09240 (11)	scaffold_14:6863602-6865453(-) (11)	NA	Q5RFF6	Chitinase domain-containing protein 1	AT4G01040.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g43220.1	"chitinase domain-containing protein 1 precursor, putative, expressed"	Medtr5g025520.1	"Glycoside hydrolase, family 18 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89327.1.A1_a_at	A	A2TS	POPTR_0015s06010	POPTR_0015s06010 (11)//POPTR_0016s13080 (11)	scaffold_15:6307687-6307748(-) (11)//scaffold_16:12383783-12383844(+) (11)	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.89327.1.A1_s_at	A	A1TS	POPTR_0016s13080	POPTR_0016s13080 (11)	scaffold_16:12384454-12384527(+) (11)	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.8933.1.A1_at	A	A1MS	POPTR_0004s20000	POPTR_0004s20000 (11)	scaffold_4:19663700-19663777(+) (11)	NA	Q56XJ7	Uncharacterized protein At4g22760	AT2G27830.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g32580.1	expressed protein	Medtr4g073410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89340.1.A1_at	A	A1TS	POPTR_0006s14500	POPTR_0006s14500 (9)	scaffold_6:11839185-11839567(-) (9)	NA	Q8GYX0	Mps one binder kinase activator-like 1	AT5G45550.1	Mob1/phocein family protein 	LOC_Os10g25674.2	"mps one binder kinase activator-like 1A, putative, expressed"	Medtr5g027360.1	Mob1/phocein 	NA	GO:0005515|protein binding	NA
PtpAffx.89340.3.A1_at	A	A2TS	POPTR_0013s04250	POPTR_0069s00230 (11)//POPTR_0013s04250 (11)	scaffold_13:2863905-2864017(+) (11)//scaffold_69:70299-72757(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89357.1.A1_at	A	A1MS	POPTR_0004s09840	POPTR_0004s09840 (9)	scaffold_4:8354657-8355119(-) (9)	NA	NA	NA	AT5G38360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os04g31240.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	AC233109_25.1	Alpha/beta hydrolase fold AC233109.4 99536-103085 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89359.1.A1_at	A	A1TS	POPTR_0002s10160	POPTR_0002s10160 (11)	scaffold_2:7294352-7294839(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89364.1.A1_s_at	A	A1TS	POPTR_0006s13560	POPTR_0006s13560 (11)	scaffold_6:10784866-10785389(+) (11)	NA	Q9LQQ8	Probable serine/threonine-protein kinase RLCKVII	AT5G02800.1	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g120700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.89390.1.A1_at	A	A1TS	POPTR_0002s19370	POPTR_0002s19370 (11)	scaffold_2:15331922-15332476(-) (11)	NA	NA	NA	AT3G62330.1	Zinc knuckle (CCHC-type) family protein 	LOC_Os01g14920.1	"zinc knuckle family protein, putative, expressed"	Medtr7g133280.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.89403.1.A1_at	A	A1TS	POPTR_0001s38830	POPTR_0001s38830 (10)	scaffold_1:38097581-38098040(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89407.1.A1_at	A	A1TA	POPTR_0001s24080	POPTR_0001s24080 (11)	scaffold_1:23463503-23463899(+) (11)	NA	Q9LX66	Receptor-like protein kinase HERK 1	AT3G46290.1	hercules receptor kinase 1 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g079470.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.8941.1.S1_at	A	A1TS	POPTR_0016s00710	POPTR_0016s00710 (11)	scaffold_16:250231-250698(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89416.1.A1_at	A	A1TS	POPTR_0005s18880	POPTR_0005s18880 (11)	scaffold_5:17287191-17287495(-) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr8g099260.1	"Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.89421.1.A1_at	A	A1TS	POPTR_0004s05850	POPTR_0004s05850 (11)	scaffold_4:4578395-4578842(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89429.1.A1_at	A	A1TA	POPTR_0019s01500	POPTR_0019s01500 (10)	scaffold_19:1315014-1315546(-) (10)	NA	NA	NA	AT4G24290.2	MAC/Perforin domain-containing protein 	LOC_Os07g07194.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr4g144280.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89430.1.A1_s_at	A	A1TS	POPTR_0017s02040	POPTR_0017s02040 (11)	scaffold_17:1491962-1492534(-) (11)	POPTR_0004s07920 (6)	Q8L8W0	ALA-interacting subunit 5	AT1G79450.1	ALA-interacting subunit 5 	LOC_Os03g02830.1	"cell cycle control protein, putative, expressed"	Medtr7g102850.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.89457.1.A1_at	A	A1TS	POPTR_0007s15180	POPTR_0007s15180 (11)	scaffold_7:14802519-14803334(+) (11)	NA	B6EXY6	Beta-amyrin synthase	AT1G78950.1	Terpenoid cyclases family protein 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.89479.1.S1_s_at	A	A1TS	POPTR_0014s03340	POPTR_0014s03340 (11)	scaffold_14:2688386-2689206(+) (11)	NA	Q2TBM9	Protein SERAC1	AT4G34310.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g08700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89488.1.S1_at	A	A1TS	POPTR_0005s00340	POPTR_0005s00340 (11)	scaffold_5:96654-97427(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT1G09540.1	myb domain protein 61 	LOC_Os05g04820.1	"MYB family transcription factor, putative, expressed"	Medtr1g103340.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89508.1.S1_at	A	A1TS	POPTR_0009s16970	POPTR_0009s16970 (9)	scaffold_9:12813386-12813646(+) (9)	NA	A5A7I7	Calcium-dependent protein kinase 4	AT2G17290.1	Calcium-dependent protein kinase family protein 	LOC_Os04g49510.1	"CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g106840.2	Protein kinase; Calcium-binding EF-hand; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.8952.1.S1_at	A	A1TS	POPTR_0006s13780	POPTR_0006s13780 (10)	scaffold_6:11002576-11003673(+) (10)	NA	NA	NA	AT3G43240.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os09g26390.1	"AT-rich interaction region, putative, expressed"	Medtr2g052110.1	"AT-rich interaction region; Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.89536.1.A1_at	A	A1TS	POPTR_0018s01460	POPTR_0018s01460 (11)	scaffold_18:1380859-1383271(+) (11)	NA	P0C1I7	Peptidyl-prolyl cis-trans isomerase cyp5	AT4G32420.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os02g10970.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr1g013450.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.89550.1.S1_at	A	A1TS	POPTR_0018s13160	POPTR_0018s13160 (11)	scaffold_18:13600509-13600645(+) (11)	NA	NA	NA	AT2G26670.1	Plant haem oxygenase (decyclizing) family protein 	LOC_Os06g40080.1	"heme oxygenase 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89550.1.S1_s_at	A	A1TS	POPTR_0018s13160	POPTR_0018s13160 (11)	scaffold_18:13600647-13601640(+) (11)	NA	NA	NA	AT2G26670.1	Plant haem oxygenase (decyclizing) family protein 	LOC_Os06g40080.1	"heme oxygenase 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89578.1.S1_at	A	A1TS	POPTR_0003s17950	POPTR_0003s17950 (11)	scaffold_3:17182363-17182860(+) (11)	POPTR_0001s14860 (6)	Q9SAI2	Probable CCR4-associated factor 1 homolog 6	AT1G80780.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr4g022250.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.8959.1.A1_at	A	A1TS	POPTR_0009s05540	POPTR_0009s05540 (11)	scaffold_9:5626710-5627333(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g124010.1	"Putative transmembrane protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89666.1.S1_at	A	A1TS	POPTR_0008s03170	POPTR_0008s03170 (10)	scaffold_8:1662184-1663035(-) (10)	NA	Q84K00	NAC domain-containing protein 78	AT3G10500.1	NAC domain containing protein 53 	LOC_Os08g44820.1	"no apical meristem protein, putative, expressed"	Medtr8g073410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.89675.1.S1_at	A	A1TS	POPTR_0016s05170	POPTR_0016s05170 (11)	scaffold_16:3143105-3143609(+) (11)	NA	P15922	Exo-poly-alpha-D-galacturonosidase	AT3G57790.1	Pectin lyase-like superfamily protein 	LOC_Os09g31270.1	"polygalacturonase, putative, expressed"	Medtr7g111140.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89696.1.S1_at	A	A1TS	POPTR_0007s07800	POPTR_0007s07800 (10)	scaffold_7:6226304-6227835(-) (10)	NA	Q5M9F1	RNA-binding protein 34	AT3G18610.1	nucleolin like 2 	LOC_Os04g52960.1	"nucleolin, putative, expressed"	Medtr4g101170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.8975.1.S1_a_at	A	A1TS	POPTR_0004s24420	POPTR_0004s24420 (11)	scaffold_4:23096602-23096691(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89759.1.S1_s_at	A	A1TS	POPTR_0015s12430	POPTR_0015s12430 (11)	scaffold_15:12680768-12681426(-) (11)	NA	A8QAN4	Protein SEY1	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os01g39310.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89772.1.A1_at	A	A1TS	POPTR_0001s28920	POPTR_0001s28920 (11)	scaffold_1:27661841-27661897(+) (11)	NA	P10566	Mitochondrial RNA-splicing protein MRS3	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89781.1.A1_at	A	A1TS	POPTR_0006s05450	POPTR_0006s05450 (10)	scaffold_6:3852795-3853063(-) (10)	NA	Q0WW21	Anthocyanin 5-O-glucosyltransferase	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8981.1.S1_at	A	A1TS	POPTR_0002s09780	POPTR_0002s09780 (11)	scaffold_2:7009308-7009805(-) (11)	NA	Q9SA00	5'-adenylylsulfate reductase-like 4	AT1G34780.1	APR-like 4 	LOC_Os02g51850.1	"OsAPRL3  adenosine 5'-phosphosulfate reductase-like OsAPRL3, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89820.1.A1_at	A	A1TS	POPTR_0014s14930	POPTR_0014s14930 (11)	scaffold_14:11003453-11003842(+) (11)	NA	Q67YI9	Clathrin interactor EPSIN 2	AT2G43160.1	ENTH/VHS family protein 	LOC_Os02g56270.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89823.2.A1_a_at	A	A1TS	POPTR_0001s19030	POPTR_0001s19030 (11)	scaffold_1:16315359-16315969(+) (11)	NA	Q9XIE2	ABC transporter G family member 36	AT1G59870.1	ABC-2 and Plant PDR ABC-type transporter family protein 	LOC_Os01g42410.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr8g015890.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.8983.1.S1_at	A	A1TS	POPTR_0010s10600	POPTR_0010s10600 (11)	scaffold_10:11088938-11089193(+) (11)	NA	Q93VR4	MLP-like protein 423	AT1G24020.2	MLP-like protein 423 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr5g036270.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.8983.1.S1_s_at	A	A1TS	POPTR_0010s10600	POPTR_0010s10600 (11)	scaffold_10:11089073-11089174(+) (11)	NA	Q93VR4	MLP-like protein 423	AT1G24020.2	MLP-like protein 423 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr5g036270.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.89860.1.S1_at	A	A1TS	POPTR_0001s11160	POPTR_0001s11160 (11)	scaffold_1:8649490-8649879(-) (11)	NA	NA	NA	AT3G05675.1	BTB/POZ domain-containing protein 	LOC_Os06g03840.1	"H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	AC233661_10.2	hypothetical protein AC233661.2 56500-58369 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89860.2.S1_s_at	A	A1TS	POPTR_0003s14470	POPTR_0003s14470 (11)	scaffold_3:14543796-14544248(-) (11)	NA	NA	NA	AT4G10800.1	BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G05675.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os06g03840.1	"H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	AC233661_10.2	hypothetical protein AC233661.2 56500-58369 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8990.1.A1_a_at	A	A1TS	POPTR_0002s23960	POPTR_0002s23960 (10)	scaffold_2:21449470-21450305(+) (10)	NA	Q5B4C9	Sterol 3-beta-glucosyltransferase	AT3G07020.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g04254.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr4g023830.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.8990.3.A1_at	A	A1MS	POPTR_0002s23960	POPTR_0002s23960 (10)	scaffold_2:21449874-21450346(+) (10)	NA	Q5B4C9	Sterol 3-beta-glucosyltransferase	AT3G07020.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g04254.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr4g023830.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.8996.1.S1_at	A	A1MS	POPTR_0011s04260	POPTR_0011s04260 (11)	scaffold_11:4270925-4271481(-) (11)	NA	O65416	F-box protein SKIP27	AT4G21510.1	F-box family protein 	LOC_Os07g37400.1	"OsFBX257 - F-box domain containing protein, expressed"	Medtr4g125090.1	"F-box protein At4g21510, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89966.1.S1_at	A	A1MS	POPTR_0016s10280	POPTR_0016s10280 (11)	scaffold_16:8485309-8485554(-) (11)	NA	NA	NA	AT2G37860.3	Protein of unknown function (DUF3411) 	LOC_Os04g44290.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8998.1.S1_a_at	A	A1TS	POPTR_0018s01140	POPTR_0018s01140 (11)	scaffold_18:1036502-1036784(-) (11)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.8998.1.S1_at	A	A1TS	POPTR_0018s01140	POPTR_0018s01140 (11)	scaffold_18:1036534-1038433(-) (11)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.8998.2.S1_at	A	A1TS	POPTR_0018s01140	POPTR_0018s01140 (10)	scaffold_18:1036294-1036616(-) (10)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.8998.2.S1_s_at	A	A1TS	POPTR_0018s01140	POPTR_0018s01140 (11)	scaffold_18:1035332-1035868(-) (11)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.90003.1.S1_s_at	A	A1TS	POPTR_0011s13350	POPTR_0011s13350 (11)	scaffold_11:16119368-16119634(+) (11)	NA	NA	NA	AT5G54530.1	"Protein of unknown function, DUF538 "	LOC_Os07g36410.1	expressed protein	Medtr2g011040.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9002.1.S1_a_at	A	A1TS	POPTR_0011s15920	POPTR_0011s15920 (11)	scaffold_11:17927105-17929421(-) (11)	NA	Q9N1Q0	Small nuclear ribonucleoprotein-associated protein B'	AT5G44500.2	Small nuclear ribonucleoprotein family protein 	LOC_Os07g07220.1	"LSM domain containing protein, expressed"	Medtr5g099340.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9002.2.S1_a_at	A	A1TS	POPTR_0011s15920	POPTR_0011s15920 (11)	scaffold_11:17927246-17929547(-) (11)	NA	Q9N1Q0	Small nuclear ribonucleoprotein-associated protein B'	AT5G44500.2	Small nuclear ribonucleoprotein family protein 	LOC_Os07g07220.1	"LSM domain containing protein, expressed"	Medtr5g099340.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9002.3.S1_s_at	A	A1TS	POPTR_0001s43060	POPTR_0001s43060 (11)	scaffold_1:43138924-43139290(+) (11)	NA	Q9N1Q0	Small nuclear ribonucleoprotein-associated protein B'	AT5G44500.2	Small nuclear ribonucleoprotein family protein 	LOC_Os07g07220.1	"LSM domain containing protein, expressed"	Medtr5g099340.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9002.4.A1_a_at	A	A1TS	POPTR_0011s15920	POPTR_0011s15920 (11)	scaffold_11:17927112-17929421(-) (11)	NA	Q9N1Q0	Small nuclear ribonucleoprotein-associated protein B'	AT5G44500.2	Small nuclear ribonucleoprotein family protein 	LOC_Os07g07220.1	"LSM domain containing protein, expressed"	Medtr5g099340.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9003.1.A1_s_at	A	A1TS	POPTR_0005s26500	POPTR_0005s26500 (11)	scaffold_5:24494165-24494631(-) (11)	NA	Q9P6K0	Uncharacterized HTH La-type RNA-binding protein C1527.03	AT4G35890.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g06070.1	"la domain containing protein, putative, expressed"	Medtr1g031850.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90060.1.S1_at	A	A1TS	POPTR_0010s16490	POPTR_0010s16490 (11)	scaffold_10:15435832-15439861(-) (11)	NA	Q86IX1	Serine/threonine-protein kinase dst1	AT1G69220.1	Protein kinase superfamily protein 	LOC_Os03g54780.1	"STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.9007.1.S1_at	A	A2TS	POPTR_0009s09590	POPTR_0009s09590 (11)//POPTR_0001s30560 (10)	scaffold_1:29047897-29048372(+) (10)//scaffold_9:8448850-8449350(+) (11)	NA	O82333	Probable indole-3-acetic acid-amido synthetase GH3.1	AT2G14960.1	Auxin-responsive GH3 family protein 	LOC_Os07g40290.1	"OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90084.1.S1_s_at	A	A1TS	POPTR_0005s02270	POPTR_0005s02270 (11)	scaffold_5:1486150-1486958(+) (11)	NA	NA	NA	AT5G27860.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). 	LOC_Os12g36740.1	"splicing factor, arginine/serine-rich 18, putative, expressed"	Medtr7g138420.1	"zgc:136322 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90090.1.S1_at	A	A1TS	POPTR_0006s00730	POPTR_0006s00730 (11)	scaffold_6:383351-383753(-) (11)	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os03g29970.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr5g103350.1	"Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone "	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.90112.1.S1_at	A	A1TS	POPTR_0018s10930	POPTR_0018s10930 (11)	scaffold_18:11768498-11768603(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90112.1.S1_s_at	A	A1TS	POPTR_0018s10930	POPTR_0018s10930 (11)	scaffold_18:11768788-11768929(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90126.1.S1_at	A	A1TS	POPTR_0014s03820	POPTR_0014s03820 (10)	scaffold_14:3052155-3052683(-) (10)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT5G42650.1	allene oxide synthase 	LOC_Os03g55800.1	"cytochrome P450, putative, expressed"	Medtr4g093070.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90149.1.A1_at	A	A1TS	POPTR_0010s09790	POPTR_0010s09790 (11)	scaffold_10:10424170-10424656(-) (11)	NA	O23346	Imidazoleglycerol-phosphate dehydratase 2	AT4G14910.1	HISTIDINE BIOSYNTHESIS 5B 	LOC_Os04g52710.1	"imidazoleglycerol-phosphate dehydratase, putative, expressed"	Medtr1g083810.1	Imidazoleglycerol-phosphate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	GO:0004424|imidazoleglycerol-phosphate dehydratase activity	NA
PtpAffx.90149.2.A1_at	A	A1TS	POPTR_0008s15220	POPTR_0008s15220 (11)	scaffold_8:10182386-10182861(+) (11)	NA	P34047	Imidazoleglycerol-phosphate dehydratase 1	AT3G22425.2	imidazoleglycerol-phosphate dehydratase 	LOC_Os04g52710.2	"imidazoleglycerol-phosphate dehydratase, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	GO:0004424|imidazoleglycerol-phosphate dehydratase activity	NA
PtpAffx.90157.1.S1_at	A	A1MS	POPTR_0012s04490	POPTR_0012s04490 (9)	scaffold_12:3767622-3778642(+) (10)	POPTR_0012s04480 (6)	Q9FR44	Phosphoethanolamine N-methyltransferase 1	AT1G48600.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50030.1	"CPuORF25 - conserved peptide uORF-containing transcript, expressed"	Medtr6g083400.1	"Phosphoethanolamine N-methyltransferase, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.90168.1.S1_at	A	A1TS	POPTR_0009s11480	POPTR_0009s11480 (11)	scaffold_9:9521418-9522134(+) (11)	NA	B8HWD3	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	AT4G34350.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase 	LOC_Os03g52170.1	"4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed"	NA	NA	"GO:0019288|""isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway""||GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction"	NA	NA
PtpAffx.90182.1.S1_at	A	A1TS	POPTR_0010s19340	POPTR_0010s19340 (9)	scaffold_10:17286324-17286666(+) (9)	POPTR_0008s07150 (6)	Q9SRL8	LOB domain-containing protein 21	AT3G11090.1	LOB domain-containing protein 21 	LOC_Os01g07480.2	"DUF260 domain containing protein, putative, expressed"	Medtr5g090500.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90186.1.S1_s_at	A	A1TS	POPTR_0003s11220	POPTR_0003s11220 (11)	scaffold_3:12071133-12071207(+) (11)	NA	Q9SU40	Monocopper oxidase-like protein SKU5	AT4G12420.2	Cupredoxin superfamily protein 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.90190.1.A1_at	A	A1TS	POPTR_0014s16740	POPTR_0014s16740 (11)	scaffold_14:12823972-12824118(-) (11)	NA	NA	NA	AT2G04340.1	unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g30140.1	expressed protein	Medtr4g114840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90192.1.S1_s_at	A	A1TS	POPTR_0016s05520	POPTR_0016s05520 (11)	scaffold_16:3455704-3456774(+) (11)	POPTR_0006s05110 (8)	Q941L0	Cellulose synthase A catalytic subunit 3 [UDP-forming]	AT5G05170.1	Cellulose synthase family protein 	LOC_Os07g10770.1	"CESA8 - cellulose synthase, expressed"	Medtr3g029130.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.90214.1.A1_at	A	A1TS	POPTR_0005s23050	POPTR_0005s23050 (10)	scaffold_5:21881881-21882250(-) (10)	NA	Q9SY07	"Pentatricopeptide repeat-containing protein At4g02820, mitochondrial"	AT4G02820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g34340.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9026.2.A1_a_at	A	A1TS	POPTR_0008s09620	POPTR_0008s09620 (11)	scaffold_8:5932693-5933082(-) (11)	NA	Q9LMX5	Ninja-family protein AFP2	AT1G13740.1	ABI five binding protein 2 	LOC_Os07g41160.2	"protein of unknown function DUF1675 domain containing protein, expressed"	Medtr5g048030.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9026.3.A1_at	A	A1TS	POPTR_0008s09620	POPTR_0008s09620 (9)	scaffold_8:5932058-5932459(-) (9)	NA	Q9LMX5	Ninja-family protein AFP2	AT1G13740.1	ABI five binding protein 2 	LOC_Os07g41160.2	"protein of unknown function DUF1675 domain containing protein, expressed"	Medtr5g048030.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9026.4.A1_a_at	A	A1TS	POPTR_0008s09620	POPTR_0008s09620 (11)	scaffold_8:5932671-5932902(-) (11)	NA	Q9LMX5	Ninja-family protein AFP2	AT1G13740.1	ABI five binding protein 2 	LOC_Os07g41160.2	"protein of unknown function DUF1675 domain containing protein, expressed"	Medtr5g048030.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.903.2.S1_a_at	A	A1TS	POPTR_0004s14170	POPTR_0004s14170 (11)	scaffold_4:14656937-14657202(-) (11)	NA	Q5R833	Acyl-coenzyme A thioesterase 13	AT1G04290.1	Thioesterase superfamily protein 	LOC_Os01g65950.1	"thioesterase family protein, putative, expressed"	Medtr3g151860.1	Phenylacetic acid degradation-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90328.1.S1_at	A	A1TS	POPTR_0018s12240	POPTR_0018s12240 (11)	scaffold_18:12784651-12785127(+) (11)	NA	NA	NA	AT2G15580.1	RING/U-box superfamily protein 	LOC_Os06g08250.1	"zinc finger family protein, putative, expressed"	Medtr8g122600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90356.2.A1_a_at	A	A1TS	POPTR_0003s11480	POPTR_0003s11480 (10)	scaffold_3:12263536-12264596(-) (10)	NA	Q8R035	"Peptidyl-tRNA hydrolase ICT1, mitochondrial"	AT1G62850.3	Class I peptide chain release factor 	LOC_Os03g14510.2	"immature colon carcinoma transcript 1 protein precursor, putative, expressed"	Medtr8g106790.1	"Immature colon carcinoma transcript 1 protein precursor, related "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	GO:0003747|translation release factor activity	NA
PtpAffx.90366.1.S1_at	A	A1TS	POPTR_0010s22670	POPTR_0010s22670 (11)	scaffold_10:19489481-19489799(-) (11)	NA	O75376	Nuclear receptor corepressor 1	AT3G52250.1	Duplicated homeodomain-like superfamily protein 	LOC_Os05g03550.1	"MYB family transcription factor, putative, expressed"	Medtr1g121520.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90367.1.S1_at	A	A1TS	POPTR_0004s10050	POPTR_0004s10050 (9)	scaffold_4:8581976-8582412(-) (9)	NA	A1A5F2	HEAT repeat-containing protein 5B	AT1G67140.1	HEAT repeat-containing protein 	LOC_Os06g30894.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90396.1.S1_at	A	A1TS	POPTR_0004s00930	POPTR_0004s00930 (11)	scaffold_4:444068-444644(-) (11)	NA	NA	NA	AT5G42570.1	B-cell receptor-associated 31-like 	LOC_Os05g19040.1	"prefoldin, putative, expressed"	Medtr4g064750.1	B-cell receptor-associated 31-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.904.1.A1_a_at	A	A2TS	POPTR_0001s44940	POPTR_0011s14120 (11)//POPTR_0001s44940 (11)	scaffold_1:45281571-45281627(-) (11)//scaffold_11:16662428-16662484(-) (11)//scaffold_593:986-1042(+) (11)	NA	NA	NA	AT1G50740.1	Transmembrane proteins 14C 	LOC_Os03g37090.1	expressed protein	Medtr5g099480.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
PtpAffx.904.1.A1_at	A	A1TS	POPTR_0011s14120	POPTR_0011s14120 (11)	scaffold_11:16661519-16663631(-) (11)	NA	NA	NA	AT1G50740.1	Transmembrane proteins 14C 	LOC_Os03g37090.1	expressed protein	Medtr5g099480.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
PtpAffx.904.2.S1_at	A	A1TS	POPTR_0001s44940	POPTR_0001s44940 (10)	scaffold_1:45280851-45282769(-) (10)	NA	NA	NA	AT1G50740.1	Transmembrane proteins 14C 	LOC_Os03g37090.1	expressed protein	Medtr5g099480.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
PtpAffx.9041.1.S1_at	A	A1TS	POPTR_0014s09110	POPTR_0014s09110 (11)	scaffold_14:6720875-6721887(-) (11)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9041.2.S1_at	A	A1TS	POPTR_0002s16950	POPTR_0002s16950 (11)	scaffold_2:12691552-12692840(-) (11)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90435.1.S1_s_at	A	A1TS	POPTR_0009s03090	POPTR_0009s03090 (11)	scaffold_9:3782862-3783091(+) (11)	NA	Q3SZ21	Ribonuclease P protein subunit p30	AT5G59980.2	Polymerase/histidinol phosphatase-like 	LOC_Os11g01074.3	"RNase P subunit p30, putative, expressed"	Medtr2g114050.1	RNase P subunit p30 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004540|ribonuclease activity	NA
PtpAffx.9044.2.S1_at	A	A1TS	POPTR_0003s11900	POPTR_0003s11900 (11)	scaffold_3:12630228-12630337(-) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT4G22880.2	leucoanthocyanidin dioxygenase 	LOC_Os01g27490.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr5g011370.1	ArgE/dapE/ACY1/CPG2/yscS; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.90488.1.S1_at	A	A1MS	POPTR_0006s16360	POPTR_0006s16360 (11)	scaffold_6:14288212-14292053(-) (11)	NA	NA	NA	AT4G28990.1	RNA-binding protein-related 	LOC_Os02g17470.2	"RNA-binding protein-related, putative, expressed"	Medtr6g099320.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.90500.1.S1_at	A	A1MS	POPTR_0009s16180	POPTR_0009s16180 (9)	scaffold_9:12362726-12363170(+) (9)	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os11g05650.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90500.2.S1_a_at	A	A1TS	POPTR_0009s16180	POPTR_0009s16180 (11)	scaffold_9:12362089-12362348(+) (11)	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os11g05650.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90500.2.S1_at	A	A1TS	POPTR_0009s16180	POPTR_0009s16180 (11)	scaffold_9:12362183-12364002(+) (11)	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os11g05650.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90513.1.S1_at	A	A1TS	POPTR_0009s05300	POPTR_0009s05300 (11)	scaffold_9:5435876-5436243(-) (11)	NA	NA	NA	AT3G07600.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g39010.1	"heavy metal associated domain containing protein, expressed"	Medtr1g062520.1	"ATFP4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90513.2.S1_at	A	A1MS	POPTR_0014s16940	POPTR_0014s16940 (10)	scaffold_14:13078933-13079299(+) (10)	POPTR_0014s16960 (7)	NA	NA	AT3G07600.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os04g39010.1	"heavy metal associated domain containing protein, expressed"	Medtr3g106980.1	"heavy-metal-associated domain-containing protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90520.1.S1_at	A	A1TS	POPTR_0014s07740	POPTR_0014s07740 (9)	scaffold_14:5795982-5796532(+) (9)	NA	B0X1Q4	CAP10 family protein CPIJ013394	AT2G45830.1	downstream target of AGL15 2 	LOC_Os02g42920.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90536.1.S1_s_at	A	A2TS	POPTR_0016s04440	POPTR_0016s04440 (11)//POPTR_0006s20720 (9)	scaffold_16:2609145-2610842(-) (11)//scaffold_6:19707724-19708581(+) (9)	NA	P93740	"Nudix hydrolase 23, chloroplastic"	AT2G42070.1	nudix hydrolase homolog 23 	LOC_Os09g38040.1	"hydrolase, NUDIX family protein, expressed"	Medtr7g111980.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.9055.2.S1_s_at	A	A1TS	POPTR_0010s08290	POPTR_0010s08290 (11)	scaffold_10:9249182-9249235(+) (11)//scaffold_10:9249255-9249437(+) (11)//scaffold_10:9249303-9249470(+) (11)	NA	Q40375	Repetitive proline-rich cell wall protein 2	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	NA	NA	NA	GO:0005199|structural constituent of cell wall	NA
PtpAffx.9055.3.S1_s_at	A	A1TS	POPTR_0010s08290	POPTR_0010s08290 (10)	scaffold_10:9249184-9249237(+) (10)//scaffold_10:9249255-9249437(+) (10)//scaffold_10:9249303-9249470(+) (10)	NA	Q40375	Repetitive proline-rich cell wall protein 2	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	NA	NA	NA	GO:0005199|structural constituent of cell wall	NA
PtpAffx.9055.5.S1_s_at	A	A1TS	POPTR_0010s08290	POPTR_0010s08290 (11)	scaffold_10:9249182-9249237(+) (11)//scaffold_10:9249255-9249437(+) (11)//scaffold_10:9249303-9249470(+) (11)//scaffold_10:9249351-9249481(+) (9)	NA	Q40375	Repetitive proline-rich cell wall protein 2	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	NA	NA	NA	GO:0005199|structural constituent of cell wall	NA
PtpAffx.9055.5.S1_x_at	A	A1TS	POPTR_0010s08290	POPTR_0010s08290 (9)	scaffold_10:9249174-9249735(+) (9)	NA	Q40375	Repetitive proline-rich cell wall protein 2	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	NA	NA	NA	GO:0005199|structural constituent of cell wall	NA
PtpAffx.9055.6.S1_at	A	A1TA	POPTR_0010s08290	POPTR_0010s08290 (10)	scaffold_10:9249093-9249867(-) (11)	NA	Q40375	Repetitive proline-rich cell wall protein 2	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	NA	NA	NA	GO:0005199|structural constituent of cell wall	NA
PtpAffx.9055.7.A1_s_at	A	A1TS	POPTR_0010s08290	POPTR_0010s08290 (11)	scaffold_10:9249181-9249236(+) (11)//scaffold_10:9249214-9249437(+) (11)//scaffold_10:9249262-9249470(+) (11)//scaffold_10:9249310-9249481(+) (9)	NA	Q40375	Repetitive proline-rich cell wall protein 2	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	NA	NA	NA	GO:0005199|structural constituent of cell wall	NA
PtpAffx.90554.1.S1_s_at	A	A1TS	POPTR_0006s03910	POPTR_0006s03910 (11)	scaffold_6:2624037-2624383(-) (11)	NA	Q6RT24	Centromere-associated protein E	AT3G10180.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g35090.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g162930.1	"Kinesin, motor region; Zinc finger, RING-type "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.90596.1.S1_at	A	A1TS	POPTR_0009s00700	POPTR_0009s00700 (11)	scaffold_9:794078-794672(-) (11)	NA	NA	NA	AT1G08220.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 168 Blast hits to 168 proteins in 86 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). "	LOC_Os05g08410.1	"ATP10 protein, expressed"	NA	NA	GO:0033615|mitochondrial proton-transporting ATP synthase complex assembly	NA	GO:0005743|mitochondrial inner membrane
PtpAffx.9064.1.S1_at	A	A1TS	POPTR_0001s08720	POPTR_0001s08720 (11)	scaffold_1:6661244-6661755(-) (11)	NA	Q9FJ93	Dehydration-responsive element-binding protein 1D	AT5G51990.1	C-repeat-binding factor 4 	LOC_Os04g48350.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr5g011080.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.90645.1.A1_a_at	A	A1TS	POPTR_0016s00460	POPTR_0016s00460 (11)	scaffold_16:137319-137675(+) (11)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT4G17180.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os08g23720.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr2g033140.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.90645.2.S1_at	A	A1MA	POPTR_0016s00460	POPTR_0016s00460 (10)	scaffold_16:138288-138812(-) (10)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT4G17180.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os08g23720.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr2g033140.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.90645.3.A1_at	A	A1TS	POPTR_0016s00460	POPTR_0016s00460 (11)	scaffold_16:138107-138828(+) (11)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT4G17180.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os08g23720.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr2g033140.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.90645.4.A1_a_at	A	A2TS	POPTR_0006s00420	POPTR_0016s00460 (11)//POPTR_0006s00420 (11)	scaffold_16:137384-137492(+) (11)//scaffold_6:191299-191407(+) (11)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT4G17180.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os09g09980.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr2g033140.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.90646.1.A1_s_at	A	A1TS	POPTR_0001s16190	POPTR_0001s16190 (11)	scaffold_1:13011473-13013000(-) (11)	NA	NA	NA	AT1G53760.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786); Has 171 Blast hits to 171 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 127; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). "	LOC_Os02g05870.1	expressed protein	Medtr8g026990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90659.2.A1_a_at	A	A1TS	POPTR_0002s23430	POPTR_0002s23430 (10)	scaffold_2:20925841-20926324(-) (9)//scaffold_2:20946896-20947376(-) (11)	NA	P47082	Vacuolar amino acid transporter 1	AT5G16740.1	Transmembrane amino acid transporter family protein 	LOC_Os11g19240.1	"transmembrane amino acid transporter protein, putative"	Medtr3g104200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90663.1.A1_at	A	A1MS	POPTR_0001s17290	POPTR_0001s17290 (10)	scaffold_1:14117279-14117769(-) (10)	NA	Q4VA72	Lys-63-specific deubiquitinase BRCC36	AT1G80210.1	Mov34/MPN/PAD-1 family protein 	LOC_Os05g46490.2	"mov34 family protein, putative, expressed"	Medtr2g125820.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90671.1.S1_at	A	A1TS	POPTR_0015s13280	POPTR_0015s13280 (11)	scaffold_15:13303163-13305820(-) (11)	NA	NA	NA	AT3G22942.1	G-protein gamma subunit 2 	LOC_Os02g04520.1	"AGG2, putative, expressed"	Medtr1g083530.1	"AGG2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90714.1.A1_at	A	A1TS	POPTR_0011s00950	POPTR_0011s00950 (11)	scaffold_11:493034-493460(+) (11)	NA	Q9ZVN4	Probable tyrosine-protein phosphatase At1g05000	AT4G03960.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os09g05020.2	"tyrosine phosphatase family protein, putative, expressed"	Medtr5g092680.1	Tyrosine specific protein phosphatase and dual specificity protein phosphatase; Putative tyrosine phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9072.1.S1_at	A	A1TA	POPTR_0015s10390	POPTR_0015s10390 (11)	scaffold_15:11335049-11335479(+) (11)	NA	NA	NA	AT5G50360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g13910.1	expressed protein	Medtr8g109620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9072.2.A1_at	A	A1TS	POPTR_0012s09610	POPTR_0012s09610 (11)	scaffold_12:10584636-10585146(-) (11)	NA	NA	NA	AT5G50360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g13910.1	expressed protein	Medtr8g109620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9076.1.A1_at	A	A1TS	POPTR_0002s23320	POPTR_0002s23320 (11)	scaffold_2:20787886-20789087(+) (11)	NA	Q5F383	Signal peptide peptidase-like 2B	AT2G43070.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 3 	LOC_Os11g24540.2	"signal peptide peptidase-like 2B, putative, expressed"	Medtr8g031970.1	"Protease-associated PA; Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.9076.2.S1_at	A	A1TS	POPTR_0002s23320	POPTR_0002s23320 (11)	scaffold_2:20779154-20779959(+) (11)	NA	Q5F383	Signal peptide peptidase-like 2B	AT2G43070.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 3 	LOC_Os11g24540.2	"signal peptide peptidase-like 2B, putative, expressed"	Medtr8g031970.1	"Protease-associated PA; Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.90775.1.A1_s_at	A	A1TS	POPTR_0001s45030	POPTR_0001s45030 (11)	scaffold_1:45340322-45340869(-) (11)	NA	NA	NA	AT5G54930.2	AT hook motif-containing protein 	NA	NA	Medtr3g068310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90782.1.S1_s_at	A	A1TS	POPTR_0006s14060	POPTR_0006s14060 (11)	scaffold_6:11326383-11328389(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g38480.1	expressed protein	Medtr7g084310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90785.1.A1_at	A	A1TS	POPTR_0004s18450	POPTR_0004s18450 (11)	scaffold_4:18342620-18343076(-) (11)	NA	P37034	Uncharacterized transporter lpg1691	AT1G31830.1	Amino acid permease family protein 	LOC_Os03g37984.2	"amino acid permease family protein, putative, expressed"	Medtr5g026930.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90803.1.S1_at	A	A1TS	POPTR_0010s25270	POPTR_0010s25270 (11)	scaffold_10:21025604-21027052(-) (11)	NA	Q9FF81	Vacuolar protein sorting-associated protein 36	AT5G04920.1	EAP30/Vps36 family protein 	LOC_Os01g59800.1	"EAP30/Vps36 family domain containing protein, expressed"	Medtr8g047910.1	Vacuolar protein sorting 36 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90810.1.A1_at	A	A1TS	POPTR_0017s08070	POPTR_0017s08070 (11)	scaffold_17:6470261-6470839(+) (11)	NA	Q8LBB2	SNF1-related protein kinase regulatory subunit gamma 1	AT1G69800.1	Cystathionine beta-synthase (CBS) protein 	LOC_Os01g40420.1	"CBS domain containing membrane protein, putative, expressed"	Medtr5g039610.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90814.1.S1_at	A	A1MS	POPTR_0012s06310	POPTR_0012s06310 (11)	scaffold_12:6638038-6638436(-) (11)	NA	P42744	NEDD8-activating enzyme E1 regulatory subunit	AT1G05180.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g60550.3	"ThiF family domain containing protein, putative, expressed"	Medtr4g062400.1	UBA/THIF-type NAD/FAD binding fold 	NA	GO:0003824|catalytic activity	NA
PtpAffx.90817.1.A1_at	A	A1MS	POPTR_0003s07460	POPTR_0003s07460 (11)	scaffold_3:9017745-9018368(+) (11)	NA	Q8LPF3	Probable pectinesterase 68	AT5G47500.1	Pectin lyase-like superfamily protein 	LOC_Os04g46740.1	"pectinesterase, putative, expressed"	Medtr5g012670.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.90841.1.A1_s_at	A	A1TS	POPTR_0018s13090	POPTR_0018s13090 (11)	scaffold_18:13540040-13540139(-) (11)	NA	B2G8V5	50S ribosomal protein L36	AT5G20180.2	Ribosomal protein L36 	LOC_Os03g59720.1	"ribosomal protein L36 containing protein, expressed"	Medtr8g120480.1	Ribosomal protein L36 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.90849.1.A1_s_at	A	A1TS	POPTR_0004s00330	POPTR_0004s00330 (11)	scaffold_4:90582-90624(+) (11)	NA	NA	NA	AT3G01435.1	Expressed protein 	LOC_Os02g09600.3	expressed protein	Medtr1g028460.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.90852.1.A1_at	A	A1TS	POPTR_0015s04240	POPTR_0015s04240 (9)	scaffold_15:4290592-4290783(-) (9)	NA	Q60HE1	Peroxisomal biogenesis factor 3	AT1G48635.1	peroxin 3 	LOC_Os09g14510.1	"peroxin-3 family protein, putative, expressed"	Medtr4g155490.1	Peroxin-3 	GO:0007031|peroxisome organization	NA	GO:0005779|integral to peroxisomal membrane
PtpAffx.90852.2.A1_at	A	A1MS	POPTR_0012s04710	POPTR_0012s04710 (11)	scaffold_12:4062368-4064230(+) (11)	NA	Q60HE1	Peroxisomal biogenesis factor 3	AT1G48635.1	peroxin 3 	LOC_Os09g14510.1	"peroxin-3 family protein, putative, expressed"	Medtr4g155490.1	Peroxin-3 	GO:0007031|peroxisome organization	NA	GO:0005779|integral to peroxisomal membrane
PtpAffx.90869.1.S1_s_at	A	A1TS	POPTR_0002s06520	POPTR_0002s06520 (11)	scaffold_2:4349236-4349564(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G09810.1	Nucleotide-sugar transporter family protein 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr1g124720.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.909.1.S1_a_at	A	A1TS	POPTR_0002s08330	POPTR_0002s08330 (11)	scaffold_2:5808468-5809679(-) (11)	NA	Q43434	V-type proton ATPase 16 kDa proteolipid subunit	AT1G19910.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os11g06890.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.90906.1.A1_at	A	A1TS	POPTR_0008s12350	POPTR_0008s12350 (11)	scaffold_8:7967242-7967983(-) (11)	NA	NA	NA	AT1G15060.1	"Uncharacterised conserved protein UCP031088, alpha/beta hydrolase "	LOC_Os01g49760.1	expressed protein	Medtr6g086800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9091.1.S1_at	A	A2TS	POPTR_0013s12950	POPTR_0013s12950 (11)//POPTR_0013s12960 (11)	scaffold_13:13563240-13563408(+) (11)//scaffold_13:13566277-13566442(+) (11)	NA	Q6AXX4	Something about silencing protein 10	AT2G43650.1	Sas10/U3 ribonucleoprotein (Utp) family protein 	LOC_Os01g01510.1	"sas10/Utp3 family protein, expressed"	Medtr4g128610.1	Sas10/Utp3 	GO:0016458|gene silencing	NA	GO:0005634|nucleus
PtpAffx.9091.1.S1_s_at	A	A2TS	POPTR_0013s12950	POPTR_0013s12950 (11)//POPTR_0013s12960 (10)	scaffold_13:13562854-13563751(+) (11)//scaffold_13:13565891-13566785(+) (11)	NA	Q6AXX4	Something about silencing protein 10	AT2G43650.1	Sas10/U3 ribonucleoprotein (Utp) family protein 	LOC_Os01g01510.1	"sas10/Utp3 family protein, expressed"	Medtr4g128610.1	Sas10/Utp3 	GO:0016458|gene silencing	NA	GO:0005634|nucleus
PtpAffx.90918.1.S1_at	A	A1TS	POPTR_0003s19820	POPTR_0003s19820 (10)	scaffold_3:18443231-18444817(-) (10)	NA	Q8S3N1	E3 ubiquitin-protein ligase SINAT5	AT3G61790.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os07g46560.1	"seven in absentia protein family domain containing protein, expressed"	Medtr3g020180.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.9092.1.S1_at	A	A1TS	POPTR_0004s11440	POPTR_0004s11440 (11)	scaffold_4:10101098-10101256(-) (11)	NA	P29384	Developmental protein SEPALLATA 2	AT3G02310.1	K-box region and MADS-box transcription factor family protein  	LOC_Os09g32948.1	"OsMADS8 - MADS-box family gene with MIKCc type-box, expressed"	Medtr7g014840.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.9092.1.S1_s_at	A	A1TS	POPTR_0004s11440	POPTR_0004s11440 (11)	scaffold_4:10101278-10103110(-) (11)	NA	P29384	Developmental protein SEPALLATA 2	AT3G02310.1	K-box region and MADS-box transcription factor family protein  	LOC_Os09g32948.1	"OsMADS8 - MADS-box family gene with MIKCc type-box, expressed"	Medtr7g014840.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.90925.1.S1_s_at	A	A1TS	POPTR_0001s01810	POPTR_0001s01810 (11)	scaffold_1:1314251-1315406(+) (11)	NA	Q8VZC9	Vacuolar protein sorting-associated protein 25	AT4G19003.1	E2F/DP family winged-helix DNA-binding domain 	LOC_Os01g46932.1	"vacuolar protein-sorting-associated protein 25, putative, expressed"	Medtr5g028140.1	"ESCRT-II complex, vps25 subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9094.1.S1_at	A	A1TS	POPTR_0014s16100	POPTR_0014s16100 (11)	scaffold_14:12173208-12173652(-) (11)	NA	Q9SJ81	Fasciclin-like arabinogalactan protein 7	AT2G04780.2	FASCICLIN-like arabinoogalactan 7 	LOC_Os09g30486.1	"fasciclin domain containing protein, expressed"	Medtr5g105700.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9094.2.S1_at	A	A1TS	POPTR_0002s22020	POPTR_0002s22020 (11)	scaffold_2:18674559-18675020(-) (11)	NA	Q9SJ81	Fasciclin-like arabinogalactan protein 7	AT2G04780.2	FASCICLIN-like arabinoogalactan 7 	LOC_Os09g30486.1	"fasciclin domain containing protein, expressed"	Medtr5g105700.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90943.1.S1_at	A	A1MS	POPTR_0007s02760	POPTR_0007s02760 (11)	scaffold_7:1602935-1603128(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g103440.1	"Formin-1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9095.1.S1_at	A	A1MS	POPTR_0001s28730	POPTR_0001s28730 (11)	scaffold_1:27501017-27501501(+) (11)	POPTR_0009s07940 (7)	Q9FLE8	Uncharacterized protein At5g39865	AT5G58530.1	Glutaredoxin family protein 	LOC_Os01g61350.1	"glutaredoxin, putative, expressed"	Medtr5g080620.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.90967.1.S1_at	A	A1MS	POPTR_0014s10120	POPTR_0014s10120 (11)	scaffold_14:7587064-7587100(+) (11)	NA	P52855	60S acidic ribosomal protein P1	AT5G24510.1	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.90967.2.S1_s_at	A	A1TS	POPTR_0014s10120	POPTR_0014s10120 (11)	scaffold_14:7586748-7587199(+) (11)	NA	P52855	60S acidic ribosomal protein P1	AT5G24510.1	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.90973.1.A1_at	A	A1TS	POPTR_0014s12880	POPTR_0014s12880 (9)	scaffold_14:9490659-9491146(+) (9)	NA	O04341	Monothiol glutaredoxin-S9	AT2G30540.1	Thioredoxin superfamily protein 	LOC_Os12g35330.1	OsGrx_C12 - glutaredoxin subgroup III	Medtr7g129910.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.90995.1.S1_s_at	A	A1TS	POPTR_0013s12110	POPTR_0013s12110 (11)	scaffold_13:12763542-12763752(-) (11)	NA	Q5XH16	NHP2-like protein 1	AT4G12600.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os03g13800.1	"ribosomal protein L7Ae, putative, expressed"	Medtr8g119890.1	Ribosomal protein L7AE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91.1.S1_at	A	A1TS	POPTR_0002s08370	POPTR_0002s08370 (10)	scaffold_2:5832684-5833099(+) (10)	NA	NA	NA	AT1G44414.1	unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g35970.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.910.1.A1_s_at	A	A1TS	POPTR_0016s14120	POPTR_0016s14120 (11)	scaffold_16:13343557-13343729(-) (11)	NA	NA	NA	AT3G51650.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51640.1); Has 27645 Blast hits to 15097 proteins in 1246 species: Archae - 44; Bacteria - 3367; Metazoa - 10036; Fungi - 2690; Plants - 1205; Viruses - 196; Other Eukaryotes - 10107 (source: NCBI BLink). 	LOC_Os12g02130.1	expressed protein	Medtr7g077900.1	"Zinc finger, Sec23/Sec24-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91015.1.S1_at	A	A2TS	POPTR_0133s00260	POPTR_0133s00260 (11)//POPTR_0003s01480 (10)	scaffold_133:118789-120952(-) (11)//scaffold_3:1349520-1351672(+) (10)	NA	NA	NA	AT5G64090.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g06860.1	expressed protein	Medtr5g094760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9102.1.S1_at	A	A1TS	POPTR_0013s06130	POPTR_0013s06130 (11)	scaffold_13:4542284-4544154(-) (11)	NA	NA	NA	AT5G37480.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g53740.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.911.1.A1_at	A	A1TS	POPTR_0002s00460	POPTR_0002s00460 (11)	scaffold_2:175733-176186(-) (11)	NA	NA	NA	AT1G76560.1	CP12 domain-containing protein 3 	LOC_Os08g40240.1	"calvin cycle protein CP12, putative, expressed"	CU179634_21.1	Protein of unknown function CP12 CU179634.6 81394-81762 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9114.1.S1_at	A	A1TS	POPTR_0014s02470	POPTR_0014s02470 (10)	scaffold_14:2053806-2054635(-) (10)	NA	O95239	Chromosome-associated kinesin KIF4A	AT5G47820.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g023990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.91154.1.S1_at	A	A1TS	POPTR_0001s40980	POPTR_0001s40980 (11)	scaffold_1:40552021-40553092(+) (11)	NA	B9N1F9	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1	AT5G53850.2	haloacid dehalogenase-like hydrolase family protein 	LOC_Os11g29370.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0046872|metal ion binding	NA
PtpAffx.91154.1.S1_s_at	A	A1TS	POPTR_0001s40980	POPTR_0001s40980 (11)	scaffold_1:40552258-40555117(+) (11)	POPTR_0011s11900 (7)	B9N1F9	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1	AT5G53850.2	haloacid dehalogenase-like hydrolase family protein 	LOC_Os11g29370.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0046872|metal ion binding	NA
PtpAffx.9122.1.A1_at	A	A1TS	POPTR_0018s07370	POPTR_0018s07370 (11)	scaffold_18:7609116-7609297(-) (11)	NA	Q9SZA3	Eukaryotic translation initiation factor 3 subunit K	AT4G33250.1	eukaryotic translation initiation factor 3K 	LOC_Os03g08450.1	"eukaryotic translation initiation factor 3 subunit K, putative, expressed"	Medtr8g133200.1	SAC3/GANP; Eukaryotic translation initiation factor 3 subunit 12; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91223.2.S1_at	A	A1TS	POPTR_0007s14560	POPTR_0007s14560 (9)	scaffold_7:14302236-14302565(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91250.1.A1_at	A	A1TS	POPTR_0003s06530	POPTR_0003s06530 (11)	scaffold_3:8028554-8029008(+) (11)	NA	O65351	Subtilisin-like protease	AT3G14067.1	Subtilase family protein 	LOC_Os02g53860.1	"OsSub22 - Putative Subtilisin homologue, expressed"	Medtr8g025260.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.91273.1.A1_s_at	A	A1TS	POPTR_0010s26070	POPTR_0010s26070 (11)	scaffold_10:21438467-21439226(-) (11)	NA	Q9FWR2	Pyrophosphate-energized membrane proton pump 3	AT1G16780.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g33490.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.9129.3.S1_s_at	A	A2TS	POPTR_0012s00690	POPTR_0012s00690 (11)//POPTR_0015s00570 (11)	scaffold_12:383848-383890(+) (11)//scaffold_15:350955-350997(+) (11)	NA	Q94JX9	Nascent polypeptide-associated complex subunit alpha-like protein 2	AT3G49470.1	nascent polypeptide-associated complex subunit alpha-like protein 2 	LOC_Os05g31000.1	"nascent polypeptide-associated complex subunit alpha, putative, expressed"	Medtr3g122460.1	Ubiquitin-associated; Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9131.1.S1_at	A	A1TS	POPTR_0002s05710	POPTR_0002s05710 (9)	scaffold_2:3753203-3754451(-) (11)	NA	Q9XHS0	40S ribosomal protein S12	AT2G32060.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g05580.1	"ribosomal protein L7Ae, putative, expressed"	Medtr5g012950.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91337.1.S1_at	A	A1TS	POPTR_0010s20590	POPTR_0010s20590 (11)	scaffold_10:18113914-18114210(+) (11)	NA	O04015	Delta-1-pyrroline-5-carboxylate synthase	AT3G55610.1	delta 1-pyrroline-5-carboxylate synthase 2 	LOC_Os05g38150.2	"amino acid kinase, putative, expressed"	Medtr3g092110.1	Gamma-glutamyl phosphate reductase GPR; Glutamate 5-kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.91345.1.S1_s_at	A	A1TS	POPTR_0008s13510	POPTR_0008s13510 (11)	scaffold_8:8886504-8886780(+) (11)	NA	P49420	Aspartate-semialdehyde dehydrogenase	AT1G14810.1	semialdehyde dehydrogenase family protein 	LOC_Os03g55280.1	"semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed"	Medtr4g156590.1	"Aspartate-semialdehyde dehydrogenase, microbial "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016620|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0046983|protein dimerization activity"	GO:0005737|cytoplasm
PtpAffx.9143.1.A1_at	A	A1TS	POPTR_0006s19460	POPTR_0006s19460 (11)	scaffold_6:18504605-18505245(+) (11)	NA	P51949	CDK-activating kinase assembly factor MAT1	AT4G30820.3	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related 	LOC_Os06g07480.1	"CDK-activating kinase assembly factor MAT1 family protein, expressed"	Medtr6g006440.1	Cdk-activating kinase assembly factor (MAT1) 	GO:0007049|cell cycle	NA	GO:0005634|nucleus
PtpAffx.9143.2.A1_at	A	A1TS	POPTR_0006s19460	POPTR_0006s19460 (11)	scaffold_6:18502468-18502780(+) (11)	NA	P51949	CDK-activating kinase assembly factor MAT1	AT4G30820.3	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related 	LOC_Os06g07480.1	"CDK-activating kinase assembly factor MAT1 family protein, expressed"	Medtr6g006440.1	Cdk-activating kinase assembly factor (MAT1) 	GO:0007049|cell cycle	NA	GO:0005634|nucleus
PtpAffx.9143.3.A1_a_at	A	A1TS	POPTR_0006s19460	POPTR_0006s19460 (11)	scaffold_6:18501571-18501753(+) (11)	NA	P51949	CDK-activating kinase assembly factor MAT1	AT4G30820.3	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related 	LOC_Os06g07480.1	"CDK-activating kinase assembly factor MAT1 family protein, expressed"	Medtr6g006440.1	Cdk-activating kinase assembly factor (MAT1) 	GO:0007049|cell cycle	NA	GO:0005634|nucleus
PtpAffx.91461.1.A1_s_at	A	A1TS	POPTR_0001s40690	POPTR_0001s40690 (11)	scaffold_1:40287027-40288193(+) (11)	NA	Q16401	26S proteasome non-ATPase regulatory subunit 5	AT3G15180.1	ARM repeat superfamily protein 	LOC_Os05g48340.1	"proteasome-related, putative, expressed"	Medtr8g071250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91488.1.A1_s_at	A	A1TS	POPTR_0005s20730	POPTR_0005s20730 (11)	scaffold_5:19876370-19877580(-) (11)	NA	NA	NA	AT1G76980.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 61 Blast hits to 61 proteins in 18 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 2; Plants - 40; Viruses - 3; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91502.1.S1_at	A	A1MS	POPTR_0010s21540	POPTR_0010s21540 (10)	scaffold_10:18782471-18782958(+) (10)	NA	B9SV84	UPF0497 membrane protein 10	AT5G54980.1	Uncharacterised protein family (UPF0497) 	LOC_Os02g12760.1	"integral membrane protein, putative, expressed"	Medtr3g086570.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91502.2.S1_a_at	A	A1TS	POPTR_0010s21540	POPTR_0010s21540 (11)	scaffold_10:18782378-18782692(+) (11)	NA	B9SV84	UPF0497 membrane protein 10	AT5G54980.1	Uncharacterised protein family (UPF0497) 	LOC_Os02g12760.1	"integral membrane protein, putative, expressed"	Medtr3g086570.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91525.1.S1_at	A	A1MS	POPTR_0002s23570	POPTR_0002s23570 (10)	scaffold_2:21125812-21126366(-) (10)	NA	NA	NA	AT1G14780.1	MAC/Perforin domain-containing protein 	LOC_Os02g27480.1	"membrane attack complex component/perforin/complement C9, putative, expressed"	Medtr4g147340.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91529.1.S1_at	A	A1TS	POPTR_0010s04590	POPTR_0010s04590 (11)	scaffold_10:5716416-5716498(-) (11)	NA	NA	NA	AT1G70180.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g39090.1	"SAM domain containing protein, putative, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91530.1.S1_at	A	A1TS	POPTR_0005s18080	POPTR_0005s18080 (11)	scaffold_5:16116360-16116812(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0007050|cell cycle arrest	GO:0004861|cyclin-dependent protein kinase inhibitor activity	GO:0005634|nucleus
PtpAffx.9156.1.S1_a_at	A	A1TS	POPTR_0003s14060	POPTR_0003s14060 (11)	scaffold_3:14248301-14249082(+) (11)	NA	NA	NA	AT4G10970.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g28690.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9156.4.S1_a_at	A	A1TS	POPTR_0003s14060	POPTR_0003s14060 (11)	scaffold_3:14248258-14248937(+) (11)	NA	NA	NA	AT4G10970.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g28690.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9157.1.A1_a_at	A	A1TS	POPTR_0002s25220	POPTR_0002s25220 (11)	scaffold_2:22370579-22370809(-) (11)	NA	NA	NA	AT5G48500.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr8g011910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9157.2.A1_at	A	A1TS	POPTR_0002s25220	POPTR_0002s25220 (11)	scaffold_2:22370513-22371224(-) (11)	NA	NA	NA	AT5G48500.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr8g011910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91597.1.S1_at	A	A1TS	POPTR_0014s06690	POPTR_0014s06690 (10)	scaffold_14:5077624-5078226(-) (10)	NA	NA	NA	AT3G60890.2	protein binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91626.1.S1_at	A	A1TS	POPTR_0010s16670	POPTR_0010s16670 (10)	scaffold_10:15550595-15552027(+) (10)	NA	NA	NA	AT1G26470.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os05g43680.1	expressed protein	Medtr5g046980.1	Inorganic pyrophosphatase; CT20 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0043189|H4/H2A histone acetyltransferase complex
PtpAffx.9164.1.A1_at	A	A1TS	POPTR_0007s12510	POPTR_0007s12510 (11)	scaffold_7:12798642-12799662(-) (11)	NA	Q9LVQ8	Probable protein phosphatase 2C 80	AT5G66720.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91644.1.S1_at	A	A1TS	POPTR_0013s00460	POPTR_0013s00460 (9)	scaffold_13:190697-206692(-) (10)	NA	NA	NA	AT3G62200.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os07g44320.1	expressed protein	AC235094_25.1	Protein of unknown function DUF537 AC235094.1 130248-133379 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91663.1.S1_a_at	A	A1TS	POPTR_0002s11050	POPTR_0002s11050 (11)	scaffold_2:8081822-8083580(+) (11)	NA	NA	NA	AT1G09920.1	TRAF-type zinc finger-related 	LOC_Os03g24184.1	"TRAF-type zinc finger domain-containing protein 1, putative, expressed"	Medtr5g075800.1	"Zinc finger, TRAF-type; TRAF-like "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.91697.1.S1_at	A	A1TS	POPTR_0018s08940	POPTR_0018s08940 (9)	scaffold_18:9853564-9853684(+) (9)	NA	Q9ZPI6	Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1	AT4G29010.1	Enoyl-CoA hydratase/isomerase family 	LOC_Os02g17390.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr6g099470.1	IQ calmodulin-binding region; Enoyl-CoA hydratase/isomerase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.917.1.A1_at	A	A1TS	POPTR_0004s20860	POPTR_0004s20860 (11)	scaffold_4:20233202-20233590(-) (11)	NA	NA	NA	AT2G27090.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os03g20530.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g094830.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91700.1.S1_a_at	A	A2TS	POPTR_0004s18550	POPTR_0004s18550 (11)//POPTR_0004s18590 (11)	scaffold_4:18400051-18400590(-) (11)//scaffold_4:18429828-18430364(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.91700.2.S1_at	A	A1TS	POPTR_0004s18550	POPTR_0004s18550 (11)	scaffold_4:18399605-18400052(-) (11)//scaffold_4:18429362-18429829(-) (10)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.9172.1.A1_at	A	A1TS	POPTR_0002s03720	POPTR_0002s03720 (11)	scaffold_2:2313314-2314442(+) (11)	NA	Q941D5	Vacuolar protein sorting-associated protein 2 homolog 3	AT1G03950.1	vacuolar protein sorting-associated protein 2.3 	LOC_Os10g33660.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	GO:0015031|protein transport	NA	NA
PtpAffx.91753.1.S1_at	A	A1TS	POPTR_0002s17500	POPTR_0002s17500 (10)	scaffold_2:13260421-13261983(-) (10)	NA	O42901	Uncharacterized protein C119.09c	AT1G01230.1	ORMDL family protein 	LOC_Os04g47970.1	"ORM1, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.91795.1.S1_at	A	A1TS	POPTR_0010s02840	POPTR_0010s02840 (10)	scaffold_10:3338243-3338483(+) (10)	POPTR_0008s11410 (8)	NA	NA	AT3G21550.1	DUF679 domain membrane protein 2 	LOC_Os03g25440.1	expressed protein	Medtr2g025940.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.918.1.S1_at	A	A1TS	POPTR_0010s19610	POPTR_0010s19610 (11)	scaffold_10:17488996-17489359(-) (11)	NA	Q39033	Phosphoinositide phospholipase C 2	AT3G08510.2	phospholipase C 2 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr3g093840.1	C2; EF-Hand type; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.91803.1.S1_at	A	A1TS	POPTR_0007s13810	POPTR_0007s13810 (11)	scaffold_7:13840056-13841804(-) (11)	NA	Q9NQE7	Thymus-specific serine protease	AT4G36195.3	Serine carboxypeptidase S28 family protein 	LOC_Os10g36760.1	"OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr5g021450.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.91812.1.S1_s_at	A	A1TS	POPTR_0002s01510	POPTR_0002s01510 (11)	scaffold_2:810156-810842(+) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.9184.1.S1_at	A	A1TS	POPTR_0002s12750	POPTR_0002s12750 (11)	scaffold_2:9495468-9495958(+) (11)	NA	NA	NA	AT5G42900.3	cold regulated gene 27 	LOC_Os03g08580.3	expressed protein	Medtr1g024320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9185.1.S1_s_at	A	A1TS	POPTR_0008s02620	POPTR_0008s02620 (11)	scaffold_8:1323579-1323632(+) (11)//scaffold_8:1331239-1331292(+) (11)	NA	NA	NA	AT3G57810.1	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr3g103530.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91855.1.S1_at	A	A1TS	POPTR_0014s10560	POPTR_0014s10560 (11)	scaffold_14:7873638-7874700(+) (11)	NA	P55230	"Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic"	AT1G27680.1	ADPGLC-PPase large subunit 	LOC_Os07g13980.1	"glucose-1-phosphate adenylyltransferase large subunit, putative, expressed"	Medtr7g134380.1	"Nucleotidyl transferase; Glucose-1-phosphate adenylyltransferase, GlgD subunit "	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.91907.1.S1_at	A	A1TS	POPTR_0007s15300	POPTR_0007s15300 (10)	scaffold_7:14880958-14881332(+) (10)	NA	NA	NA	AT3G19990.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). "	LOC_Os02g58150.1	expressed protein	Medtr1g047000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9191.1.S1_at	A	A1TS	POPTR_0005s06830	POPTR_0005s06830 (9)	scaffold_5:4599713-4600094(+) (10)	NA	Q8RWD6	F-box protein At5g39450	AT5G39450.1	F-box family protein 	LOC_Os08g01430.1	"OsFBX260 - F-box domain containing protein, expressed"	Medtr3g142910.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91912.1.S1_at	A	A1TS	POPTR_0015s00700	POPTR_0015s00700 (11)	scaffold_15:415373-416366(+) (11)	NA	Q8LEQ0	60S acidic ribosomal protein P1-3	AT5G24510.1	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.91919.1.S1_at	A	A1TS	POPTR_0008s03110	POPTR_0008s03110 (11)	scaffold_8:1636930-1637179(+) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G04420.3	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g57690.2	"kelch repeat protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9192.1.S1_a_at	A	A2TS	POPTR_0001s02230	POPTR_0001s02230 (10)//POPTR_0003s09310 (10)	scaffold_1:1684097-1684147(+) (10)//scaffold_1562:4794-4844(-) (10)//scaffold_3:10617376-10617426(-) (10)	NA	NA	NA	AT3G57280.1	Transmembrane proteins 14C 	LOC_Os04g39450.1	expressed protein	Medtr7g108090.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
PtpAffx.9192.1.S1_at	A	A1TS	POPTR_0003s09310	POPTR_0003s09310 (9)	scaffold_3:10617094-10618575(-) (9)	NA	NA	NA	AT3G57280.1	Transmembrane proteins 14C 	LOC_Os06g19690.1	expressed protein	Medtr7g108090.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
PtpAffx.9192.2.A1_at	A	A1TS	POPTR_0001s02230	POPTR_0001s02230 (11)	scaffold_1:1682818-1684472(+) (11)//scaffold_1562:4469-4797(-) (10)	NA	NA	NA	AT3G57280.1	Transmembrane proteins 14C 	LOC_Os04g39450.1	expressed protein	Medtr7g108090.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
PtpAffx.91950.1.S1_at	A	A1TS	POPTR_0006s15970	POPTR_0006s15970 (11)	scaffold_6:13737449-13739567(-) (11)	POPTR_0018s06490 (6)	NA	NA	AT1G11020.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os08g29590.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g119280.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9199.1.S1_at	A	A1TS	POPTR_0015s05410	POPTR_0015s05410 (11)	scaffold_15:5773449-5775010(+) (11)	NA	P25889	Uncharacterized protein yeiA	AT3G17810.1	pyrimidine 1 	LOC_Os02g50350.1	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr6g080670.1	Dihydroorotate dehydrogenase 1; Dihydroorotate oxidase 	GO:0044281|small molecule metabolic process||GO:0006222|UMP biosynthetic process||GO:0055114|oxidation reduction	GO:0004152|dihydroorotate dehydrogenase activity	NA
PtpAffx.9199.2.A1_at	A	A1TS	POPTR_0012s04020	POPTR_0012s04020 (11)	scaffold_12:3245552-3247901(+) (11)	NA	P25889	Uncharacterized protein yeiA	AT3G17810.1	pyrimidine 1 	LOC_Os02g50350.1	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr6g080670.1	Dihydroorotate dehydrogenase 1; Dihydroorotate oxidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92027.1.A1_at	A	A1TS	POPTR_0014s18960	POPTR_0014s18960 (11)	scaffold_14:16570316-16571822(-) (11)	NA	NA	NA	AT3G07170.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g30910.2	"SAM domain family protein, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9204.1.S1_at	A	A1TS	POPTR_0015s05400	POPTR_0015s05400 (10)	scaffold_15:5760651-5761107(+) (10)	NA	Q8RXG3	Mitogen-activated protein kinase kinase 5	AT1G73500.1	MAP kinase kinase 9 	LOC_Os03g12390.1	"STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g080600.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.9204.2.A1_at	A	A1TS	POPTR_0012s04010	POPTR_0012s04010 (10)	scaffold_12:3238618-3238654(+) (10)	NA	Q8RXG3	Mitogen-activated protein kinase kinase 5	AT1G73500.1	MAP kinase kinase 9 	LOC_Os03g12390.1	"STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g080600.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.9204.2.A1_s_at	A	A1TS	POPTR_0012s04010	POPTR_0012s04010 (11)	scaffold_12:3238253-3238702(+) (11)	NA	Q8RXG3	Mitogen-activated protein kinase kinase 5	AT1G73500.1	MAP kinase kinase 9 	LOC_Os03g12390.1	"STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g080600.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.92049.1.S1_s_at	A	A7TS	POPTR_0001s23060	POPTR_0001s23120 (11)//POPTR_0001s23110 (11)//POPTR_0001s23090 (11)//POPTR_0001s23060 (11)//POPTR_0001s23130 (11)//POPTR_0002s21830 (11)//POPTR_0001s23100 (11)	scaffold_1:22143478-22144215(+) (11)//scaffold_1:22256149-22256734(+) (11)//scaffold_1:22288954-22289701(-) (11)//scaffold_1:22299002-22299748(-) (11)//scaffold_1:22330404-22331148(-) (11)//scaffold_1:22373160-22373904(-) (11)//scaffold_2:18526891-18527635(+) (11)	NA	Q5Z9Z0	Beta-glucosidase 24	AT3G60120.1	beta glucosidase 27 	LOC_Os04g39864.4	"Os4bglu11 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr3g040460.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.92055.1.S1_at	A	A1TS	POPTR_0003s18170	POPTR_0003s18170 (11)	scaffold_3:17350643-17353361(+) (11)	NA	NA	NA	AT1G16000.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g17060.1	expressed protein	Medtr4g021670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92060.1.S1_at	A	A1TS	POPTR_0013s02210	POPTR_0013s02210 (11)	scaffold_13:1312220-1312680(-) (11)	NA	Q5H7P5	Mannosylglycoprotein endo-beta-mannosidase	AT1G09010.1	glycoside hydrolase family 2 protein 	LOC_Os05g32530.1	"mannosylglycoprotein endo-beta-mannosidase, putative, expressed"	Medtr1g099500.1	"Glycoside hydrolase family 2, sugar binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.92065.1.S1_a_at	A	A1TS	POPTR_0015s13430	POPTR_0015s13430 (11)	scaffold_15:13392796-13393062(-) (11)	NA	P42404	3-hexulose-6-phosphate isomerase	AT5G52190.1	Sugar isomerase (SIS) family protein 	LOC_Os04g48020.1	"3-hexulose-6-phosphate isomerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92085.1.S1_at	A	A1TS	POPTR_0010s15810	POPTR_0010s15810 (10)	scaffold_10:14926462-14926946(+) (10)	NA	NA	NA	AT3G17120.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g04150.2	expressed protein	Medtr2g037800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92099.1.A1_s_at	A	A1TS	POPTR_0008s07360	POPTR_0008s07360 (11)	scaffold_8:4514220-4514577(-) (11)	NA	Q8LFR2	Dehydration-responsive element-binding protein 2C	AT2G40340.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g07120.2	"AP2 domain containing protein, expressed"	Medtr5g090850.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.92099.2.S1_s_at	A	A1TS	POPTR_0008s07360	POPTR_0008s07360 (11)	scaffold_687:5763-6151(-) (10)//scaffold_8:4515394-4515792(-) (11)	NA	Q8LFR2	Dehydration-responsive element-binding protein 2C	AT2G40340.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g07120.2	"AP2 domain containing protein, expressed"	Medtr5g090850.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.92119.1.S1_at	A	A1TS	POPTR_0001s19270	POPTR_0001s19270 (11)	scaffold_1:16885650-16886505(+) (11)	NA	Q9LVZ8	Protein LURP-one-related 12	AT3G15810.1	Protein of unknown function (DUF567) 	LOC_Os01g56450.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126530.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92136.1.S1_at	A	A1MS	POPTR_0001s37010	POPTR_0001s37010 (11)	scaffold_1:35839095-35839145(+) (11)	NA	O74462	Transcription initiation factor TFIID subunit 6	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59 	LOC_Os01g32750.1	"TATA binding protein-associated factor, putative, expressed"	Medtr7g026010.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0051090|regulation of transcription factor activity||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity||GO:0016986|transcription initiation factor activity	GO:0005634|nucleus
PtpAffx.92136.1.S1_s_at	A	A1TS	POPTR_0001s37010	POPTR_0001s37010 (11)	scaffold_1:35837325-35839093(+) (11)	NA	O74462	Transcription initiation factor TFIID subunit 6	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59 	LOC_Os01g32750.1	"TATA binding protein-associated factor, putative, expressed"	Medtr7g026010.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0051090|regulation of transcription factor activity||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity||GO:0016986|transcription initiation factor activity	GO:0005634|nucleus
PtpAffx.9216.1.S1_at	A	A1TS	POPTR_0006s08620	POPTR_0006s08620 (10)	scaffold_3:15216226-15216645(+) (10)	POPTR_0003s15450 (8)	Q9LZ98	ABC transporter I family member 20	AT5G02270.1	non-intrinsic ABC protein 9 	LOC_Os03g20170.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g102810.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.9216.2.S1_a_at	A	A2TS	POPTR_0006s08620	POPTR_0006s08620 (11)//POPTR_0003s15450 (10)	scaffold_3:15215656-15215803(+) (10)//scaffold_6:6301015-6301296(+) (9)	NA	Q9LZ98	ABC transporter I family member 20	AT5G02270.1	non-intrinsic ABC protein 9 	LOC_Os03g20170.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g102810.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.92167.1.S1_at	A	A1TS	POPTR_0007s05110	POPTR_0007s05110 (10)	scaffold_7:3309015-3309622(+) (10)	NA	Q5ZLV4	tRNA (cytosine-5-)-methyltransferase NSUN2	AT2G22400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g29630.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr3g101990.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92178.1.S1_at	A	A1TS	POPTR_0001s37500	POPTR_0001s37500 (11)	scaffold_1:36474814-36475830(+) (11)	NA	Q8VYE2	Mitochondrial import inner membrane translocase subunit TIM50	AT1G55900.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g43770.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g103110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92178.2.S1_s_at	A	A1TS	POPTR_0011s09550	POPTR_0011s09550 (11)	scaffold_11:11870526-11870763(+) (11)	NA	Q8VYE2	Mitochondrial import inner membrane translocase subunit TIM50	AT1G55900.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g43770.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g103110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92191.1.A1_at	A	A1TS	POPTR_0015s11100	POPTR_0015s11100 (11)	scaffold_15:11768537-11768988(-) (11)	NA	Q8LFW6	Squamosa promoter-binding-like protein 13	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.922.1.S1_a_at	A	A2TS	POPTR_0010s11060	POPTR_0015s08010 (11)//POPTR_0010s11060 (11)	scaffold_10:11437508-11437877(-) (11)//scaffold_15:9292653-9293022(+) (11)//scaffold_8:9304680-9305049(+) (11)	POPTR_0008s14080 (6)	Q9D1M0	Protein SEC13 homolog	AT2G30050.1	transducin family protein / WD-40 repeat family protein 	LOC_Os02g04320.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g076630.1	"seh1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.922.1.S1_at	A	A1TS	POPTR_0010s11060	POPTR_0010s11060 (11)	scaffold_10:11437391-11437860(-) (11)	NA	Q9D1M0	Protein SEC13 homolog	AT2G30050.1	transducin family protein / WD-40 repeat family protein 	LOC_Os02g04320.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g076630.1	"seh1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.922.1.S1_x_at	A	A1TS	POPTR_0010s11060	POPTR_0010s11060 (11)	scaffold_10:11437420-11437840(-) (11)	NA	Q9D1M0	Protein SEC13 homolog	AT2G30050.1	transducin family protein / WD-40 repeat family protein 	LOC_Os02g04320.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g076630.1	"seh1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.922.2.S1_at	A	A1TS	POPTR_0015s08010	POPTR_0015s08010 (11)	scaffold_15:9292692-9293215(+) (11)	NA	Q5XFW8	Protein SEC13 homolog	AT2G30050.1	transducin family protein / WD-40 repeat family protein 	LOC_Os02g04320.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92222.1.S1_at	A	A1TS	POPTR_0009s13690	POPTR_0009s13690 (11)	scaffold_9:10867240-10867915(+) (11)	NA	Q0VBD2	Protein MCM10 homolog	AT2G20980.1	minichromosome maintenance 10 	LOC_Os09g36820.1	"MCM10 - Putative minichromosome maintenance MCM protein 10, expressed"	Medtr3g163420.1	"Zinc finger, Mcm10/DnaG-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9224.1.S1_at	A	A1TS	POPTR_0016s02870	POPTR_0016s02870 (11)	scaffold_16:1413184-1413688(-) (11)	NA	Q9Z8L2	4-alpha-glucanotransferase	AT2G40840.1	disproportionating enzyme 2 	LOC_Os07g46790.1	"4-alpha-glucanotransferase, putative, expressed"	Medtr7g105640.1	"Glycoside hydrolase, family 77 "	GO:0005975|carbohydrate metabolic process	GO:0004134|4-alpha-glucanotransferase activity	NA
PtpAffx.92254.1.S1_s_at	A	A1TS	POPTR_0015s06740	POPTR_0015s06740 (11)	scaffold_15:7740436-7743256(+) (11)	NA	Q8N3C0	Activating signal cointegrator 1 complex subunit 3	AT5G61140.2	U5 small nuclear ribonucleoprotein helicase 	LOC_Os03g11470.1	"DEAD/DEAH box helicase domain containing protein, expressed"	Medtr3g037000.1	Sec63; ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.9226.1.S1_at	A	A1TS	POPTR_0002s23930	POPTR_0002s23930 (11)	scaffold_2:21406484-21406980(+) (11)	NA	Q9LVM5	Uric acid degradation bifunctional protein TTL	AT5G58220.3	transthyretin-like protein 	LOC_Os03g27320.3	"steroid binding protein, putative, expressed"	AC225519_20.1	Transthyretin AC225519.5 87954-92625 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92270.1.S1_s_at	A	A1TS	POPTR_0004s20940	POPTR_0004s20940 (11)	scaffold_4:20289775-20291656(+) (11)	NA	Q6DIQ3	Protein phosphatase 1 regulatory subunit 7	AT5G22320.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g73560.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr2g107470.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.92286.1.A1_at	A	A1MS	POPTR_0018s07000	POPTR_0018s07000 (11)	scaffold_18:7129423-7129923(+) (11)	POPTR_0006s15540 (6)	O14638	Ectonucleotide pyrophosphatase/phosphodiesterase family member 3	AT4G29680.1	Alkaline-phosphatase-like family protein 	LOC_Os01g10020.1	"ectonucleotide pyrophosphatase/phosphodiesterase family member 1, putative, expressed"	Medtr4g160930.1	Alkaline phosphatase; Type I phosphodiesterase/nucleotide pyrophosphatase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.92297.1.S1_s_at	A	A1TS	POPTR_0003s13390	POPTR_0003s13390 (11)	scaffold_3:13789115-13789537(+) (11)	NA	Q9LS46	Aluminum-activated malate transporter 9	AT3G18440.1	aluminum-activated malate transporter 9 	LOC_Os01g12210.1	"aluminum-activated malate transporter, putative, expressed"	Medtr4g158340.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92312.1.S1_at	A	A1TS	POPTR_0001s37270	POPTR_0001s37270 (9)	scaffold_1:36254231-36256270(-) (9)	NA	Q8H125	Scarecrow-like protein 5	AT1G50600.1	scarecrow-like 5 	LOC_Os07g39470.1	"gibberellin response modulator protein, putative, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92337.1.S1_at	A	A1TS	POPTR_0009s04950	POPTR_0009s04950 (11)	scaffold_9:5168825-5170690(-) (11)	NA	Q9SD61	Zinc finger CCCH domain-containing protein 42	AT3G47120.1	RNA recognition motif (RRM)-containing protein 	LOC_Os03g61110.1	"RNA-binding motif protein, putative, expressed"	Medtr5g078580.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.9234.1.A1_s_at	A	A1TS	POPTR_0013s05460	POPTR_0013s05460 (11)	scaffold_13:3903230-3903473(+) (11)	NA	C4L424	Chaperone protein dnaJ	AT5G18140.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g12236.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g101890.1	Chaperone DnaJ 	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.92352.1.S1_a_at	A	A1TS	POPTR_0006s03250	POPTR_0006s03250 (11)	scaffold_6:2058527-2058745(-) (11)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	LOC_Os05g33960.1	"peptide transporter PTR2, putative, expressed"	Medtr7g105690.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.92366.1.S1_at	A	A1TS	POPTR_0010s17160	POPTR_0010s17160 (11)	scaffold_10:15875013-15877162(+) (11)	NA	NA	NA	AT1G13990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g07190.1	expressed protein	Medtr5g045550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92370.1.S1_at	A	A1TS	POPTR_0013s11820	POPTR_0013s11820 (10)	scaffold_13:12456590-12458064(-) (10)	NA	Q949X3	"Histidinol-phosphate aminotransferase, chloroplastic"	AT1G71920.1	HISTIDINE BIOSYNTHESIS 6B 	LOC_Os02g47940.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr3g097770.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.9239.1.A1_a_at	A	A2TS	POPTR_0001s33030	POPTR_0001s33030 (11)//POPTR_0017s08860 (11)	scaffold_1:31276972-31277162(+) (11)//scaffold_17:7508984-7509174(+) (11)	NA	Q9LW29	Protein AUXIN SIGNALING F-BOX 2	AT3G26810.1	auxin signaling F-box 2 	LOC_Os04g32460.2	"OsFBL16 - F-box domain and LRR containing protein, expressed"	Medtr7g096650.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9239.2.S1_at	A	A1TS	POPTR_0001s33030	POPTR_0001s33030 (11)	scaffold_1:31277012-31277504(+) (11)	NA	Q9LW29	Protein AUXIN SIGNALING F-BOX 2	AT3G26810.1	auxin signaling F-box 2 	LOC_Os04g32460.2	"OsFBL16 - F-box domain and LRR containing protein, expressed"	Medtr7g096650.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.924.1.A1_at	A	A1TS	POPTR_0010s18080	POPTR_0010s18080 (11)	scaffold_10:16452576-16453015(+) (11)	NA	Q9SA34	Probable inosine-5'-monophosphate dehydrogenase	AT1G16350.1	Aldolase-type TIM barrel family protein 	LOC_Os03g56800.1	"CBS domain containing membrane protein, putative, expressed"	Medtr7g100530.1	IMP dehydrogenase; 	GO:0055114|oxidation reduction	GO:0003824|catalytic activity	NA
PtpAffx.92404.1.S1_at	A	A1TS	POPTR_0001s27300	POPTR_0001s27300 (10)	scaffold_1:26191140-26191801(-) (10)	NA	Q9LXV5	Nuclear transcription factor Y subunit A-1	AT5G12840.4	"nuclear factor Y, subunit A1 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.9241.1.S1_at	A	A1TS	POPTR_0009s16340	POPTR_0009s16340 (11)	scaffold_9:12445132-12446065(+) (11)	NA	NA	NA	AT2G27290.1	Protein of unknown function (DUF1279) 	LOC_Os04g33940.1	"protein of unknown function DUF1279 domain containing protein, expressed"	AC146557_15.1	Protein of unknown function DUF1279 AC146557.33 83480-81882 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92412.1.S1_at	A	A2TS	POPTR_0011s11130	POPTR_0011s11130 (11)//POPTR_0011s11180 (10)	scaffold_11:13853952-13854519(+) (11)//scaffold_11:13904615-13905118(-) (10)//scaffold_1585:141-644(+) (9)	POPTR_1585s00200 (8)	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78850.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23760.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.92412.2.S1_a_at	A	A1TS	POPTR_0011s11130	POPTR_0011s11130 (11)	scaffold_11:13853251-13853707(+) (11)	POPTR_0011s11180 (8)	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78850.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23760.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.9242.1.S1_s_at	A	A1TS	POPTR_0013s12230	POPTR_0013s12230 (11)	scaffold_13:12858711-12859248(+) (11)	NA	NA	NA	AT2G31130.1	unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). 	NA	NA	Medtr4g109560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92442.2.A1_at	A	A1TS	POPTR_0006s07510	POPTR_0006s07510 (11)	scaffold_6:5444430-5448057(+) (11)	NA	NA	NA	AT2G19260.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g34720.2	"PHD-finger domain containing protein, putative, expressed"	Medtr3g149370.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92455.1.A1_at	A	A1MS	POPTR_0017s04000	POPTR_0017s04000 (9)	scaffold_17:3012688-3013148(+) (9)	NA	Q9Y5Q8	General transcription factor 3C polypeptide 5	AT3G49410.1	"Transcription factor IIIC, subunit 5 "	LOC_Os01g34430.1	expressed protein	Medtr7g065320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9248.1.S1_at	A	A1TS	POPTR_0013s05570	POPTR_0013s05570 (10)	scaffold_13:3973741-3974258(+) (10)//scaffold_446:8563-9079(+) (10)	NA	Q08632	Short-chain type dehydrogenase/reductase	AT3G03980.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g31780.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	AC233662_57.1	Short-chain dehydrogenase/reductase SDR AC233662.1 262132-261094 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.92485.2.S1_at	A	A1TS	POPTR_0013s14730	POPTR_0013s14730 (10)	scaffold_13:14860712-14861139(+) (10)	NA	NA	NA	AT5G54490.1	pinoid-binding protein 1 	LOC_Os06g46950.1	"EF hand family protein, putative, expressed"	Medtr2g103250.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92499.1.S1_a_at	A	A1TS	POPTR_0002s02560	POPTR_0002s02560 (11)	scaffold_2:1449368-1449685(-) (11)	NA	Q8GW29	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7	AT5G06300.1	Putative lysine decarboxylase family protein 	LOC_Os04g43840.1	"possible lysine decarboxylase domain containing protein, expressed"	Medtr3g156140.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92521.1.S1_a_at	A	A1TS	POPTR_0009s07620	POPTR_0009s07620 (9)	scaffold_9:7086395-7086427(+) (9)	NA	NA	NA	AT3G07910.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 192 Blast hits to 192 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	NA	NA	Medtr3g020070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92521.1.S1_at	A	A1TS	POPTR_0009s07620	POPTR_0009s07620 (9)	scaffold_9:7086327-7089402(+) (9)	NA	NA	NA	AT3G07910.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 192 Blast hits to 192 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	NA	NA	Medtr3g020070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92531.1.S1_s_at	A	A3TS	POPTR_0008s20670	POPTR_0010s03200 (11)//POPTR_0008s20680 (11)//POPTR_0008s20670 (11)	scaffold_10:3916716-3916993(-) (11)//scaffold_8:14573036-14573313(+) (11)//scaffold_8:14590610-14590887(+) (11)	NA	NA	NA	AT3G06150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g32960.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92544.1.A1_at	A	A1TS	POPTR_0012s01560	POPTR_0012s01560 (11)	scaffold_12:1196631-1197047(+) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.9255.1.S1_s_at	A	A1TS	POPTR_0002s11490	POPTR_0002s11490 (11)	scaffold_2:8530502-8531017(-) (11)	NA	Q9ZQB9	Probable xyloglucan glycosyltransferase 12	AT4G07960.1	Cellulose-synthase-like C12 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92607.1.S1_at	A	A1TS	POPTR_0003s05530	POPTR_0003s05530 (11)	scaffold_3:6835369-6836334(-) (11)	NA	NA	NA	AT1G15660.1	centromere protein C 	LOC_Os01g43050.1	"CENP-C1, putative, expressed"	Medtr6g083920.1	"CENP-C, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9265.1.S1_s_at	A	A1TS	POPTR_0016s02620	POPTR_0016s02620 (11)	scaffold_16:1298779-1299008(+) (11)	NA	Q9SG80	Alpha-L-arabinofuranosidase 1	AT3G10740.1	alpha-L-arabinofuranosidase 1 	LOC_Os12g03470.1	"alpha-N-arabinofuranosidase A, putative, expressed"	Medtr7g105210.1	"alpha-L-arabinofuranosidase protein, putative "	GO:0044262|cellular carbohydrate metabolic process||GO:0046373|L-arabinose metabolic process||GO:0044281|small molecule metabolic process	GO:0046556|alpha-N-arabinofuranosidase activity	NA
PtpAffx.9265.2.S1_at	A	A1TS	POPTR_0016s02630	POPTR_0016s02630 (11)	scaffold_16:1302506-1305010(+) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9265.4.A1_at	A	A1TS	POPTR_0007s08550	POPTR_0007s08550 (11)	scaffold_7:7370836-7371379(-) (11)	NA	Q9LM69	RING-H2 finger protein ATL80	AT1G20823.1	RING/U-box superfamily protein 	LOC_Os02g46100.1	"RING-H2 finger protein, putative, expressed"	Medtr5g024680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92655.1.A1_at	A	A1TS	POPTR_0010s16280	POPTR_0010s16280 (11)	scaffold_10:15260936-15261406(+) (11)	NA	Q9GYZ0	Kinesin-like protein KIF15	AT3G17360.1	phragmoplast orienting kinesin 1 	LOC_Os12g39980.1	"kinesin motor domain containing protein, putative, expressed"	Medtr8g134270.1	"Peptidase S26A, signal peptidase I "	GO:0007018|microtubule-based movement||GO:0016032|viral reproduction	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.92667.1.S1_s_at	A	A1TS	POPTR_0002s09150	POPTR_0002s09150 (11)	scaffold_2:6483685-6486129(-) (11)	NA	NA	NA	AT4G08540.1	DNA-directed RNA polymerase II protein 	LOC_Os07g43322.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9267.1.S1_at	A	A1TS	POPTR_0014s08600	POPTR_0014s08600 (11)	scaffold_14:6399254-6399344(+) (11)	NA	O04609	WRKY transcription factor 22	AT4G01250.1	WRKY family transcription factor 	LOC_Os02g16540.1	"OsWRKY39v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088890.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.92678.1.S1_at	A	A1TS	POPTR_0002s01530	POPTR_0002s01530 (11)	scaffold_2:815644-815932(-) (11)	NA	P48147	Prolyl endopeptidase	AT1G76140.1	Prolyl oligopeptidase family protein 	LOC_Os01g01830.1	"OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.927.1.S1_at	A	A1TS	POPTR_0019s12020	POPTR_0019s12020 (11)	scaffold_19:13186851-13187716(-) (11)	NA	NA	NA	AT2G31090.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11600.1	conserved hypothetical protein	Medtr4g109490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92745.1.S1_at	A	A1TS	POPTR_0010s12240	POPTR_0010s12240 (11)	scaffold_10:12294214-12294602(+) (11)	NA	Q9C9U4	Mitogen-activated protein kinase 15	AT1G73670.1	MAP kinase 15 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.92806.1.S1_at	A	A1MS	POPTR_0001s00790	POPTR_0001s00790 (11)	scaffold_1:643164-643666(-) (11)	NA	Q8VYT5	F-box protein At5g07670	AT5G07670.1	RNI-like superfamily protein 	LOC_Os02g44104.1	"F-box family protein, putative, expressed"	Medtr2g026110.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9284.1.S1_a_at	A	A2TS	POPTR_0008s10450	POPTR_0010s15620 (11)//POPTR_0008s10450 (11)	scaffold_10:14773660-14775154(-) (11)//scaffold_8:6540942-6542311(+) (11)	NA	NA	NA	AT3G06610.1	DNA-binding enhancer protein-related 	LOC_Os03g61680.1	"huntingtin-interacting protein HYPK, putative, expressed"	Medtr2g038060.1	"Unknown, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9284.1.S1_at	A	A1TS	POPTR_0008s10450	POPTR_0008s10450 (11)	scaffold_8:6540845-6542346(+) (11)	NA	NA	NA	AT3G06610.1	DNA-binding enhancer protein-related 	LOC_Os03g61680.1	"huntingtin-interacting protein HYPK, putative, expressed"	Medtr2g038060.1	"Unknown, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9284.2.S1_at	A	A1TS	POPTR_0010s15620	POPTR_0010s15620 (11)	scaffold_10:14773629-14775096(-) (11)	NA	NA	NA	AT3G06610.1	DNA-binding enhancer protein-related 	LOC_Os03g61680.1	"huntingtin-interacting protein HYPK, putative, expressed"	Medtr2g038060.1	"Unknown, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92848.1.S1_at	A	A1TS	POPTR_0004s03850	POPTR_0004s03850 (10)	scaffold_4:2744569-2745138(+) (10)	NA	NA	NA	AT1G61100.1	"disease resistance protein (TIR class), putative "	LOC_Os03g64320.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9285.1.A1_at	A	A1TS	POPTR_0012s13680	POPTR_0012s13680 (11)	scaffold_12:13725698-13728460(-) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT5G62090.2	SEUSS-like 2 	LOC_Os06g03600.3	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92866.1.A1_at	A	A1TS	POPTR_0004s01640	POPTR_0004s01640 (11)	scaffold_4:991017-992198(-) (11)	NA	P48722	Heat shock 70 kDa protein 4L	AT1G11660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os06g46600.1	"DnaK family protein, putative, expressed"	Medtr5g099870.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92870.1.S1_at	A	A1TS	POPTR_0019s13550	POPTR_0019s13550 (11)	scaffold_19:14445545-14447429(-) (11)	NA	Q8GZA8	Protein ULTRAPETALA 1	AT4G28190.1	"Developmental regulator, ULTRAPETALA "	LOC_Os01g57240.1	expressed protein	AC229695_17.1	"Protein ULTRAPETALA 2, putative AC229695.5 69003-71368 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92870.2.A1_at	A	A1MS	POPTR_0019s13550	POPTR_0019s13550 (11)	scaffold_19:14443289-14443842(-) (11)	NA	Q8GZA8	Protein ULTRAPETALA 1	AT4G28190.1	"Developmental regulator, ULTRAPETALA "	LOC_Os01g57240.1	expressed protein	AC229695_17.1	"Protein ULTRAPETALA 2, putative AC229695.5 69003-71368 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92873.1.S1_at	A	A1TS	POPTR_0001s17930	POPTR_0001s17930 (11)	scaffold_1:14869170-14869584(-) (11)	NA	NA	NA	AT1G52380.1	NUP50 (Nucleoporin 50 kDa) protein 	LOC_Os05g28190.1	"ranBP1 domain containing protein, expressed"	NA	NA	GO:0046907|intracellular transport	NA	NA
PtpAffx.92886.1.S1_at	A	A1TS	POPTR_0003s16100	POPTR_0003s16100 (11)	scaffold_3:15720536-15721034(+) (11)	POPTR_0001s13020 (7)	Q8LG98	Ubiquitin thioesterase otubain-like	AT1G28120.1	"CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). "	LOC_Os08g42540.1	"ubiquitin thioesterase otubain-like, putative, expressed"	Medtr2g011480.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92888.1.S1_s_at	A	A1TS	POPTR_0004s15110	POPTR_0004s15110 (11)	scaffold_4:15787180-15790555(-) (11)	POPTR_0009s10880 (8)	P53681	CDPK-related protein kinase	AT3G50530.1	CDPK-related kinase 	LOC_Os07g44710.1	"CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g129190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.9290.1.S1_at	A	A1TS	POPTR_0005s08860	POPTR_0005s08860 (11)	scaffold_5:6189630-6193521(+) (11)	NA	Q9SVB7	Probable WRKY transcription factor 13	AT4G39410.1	WRKY DNA-binding protein 13 	LOC_Os01g08710.1	"OsWRKY79 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g144590.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.92915.1.S1_s_at	A	A1TS	POPTR_0001s35310	POPTR_0001s35310 (10)	scaffold_1:33641299-33642172(-) (10)	POPTR_0001s22085 (8)//POPTR_0010s15490 (7)//POPTR_0002s20820 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92940.1.S1_at	A	A1TS	POPTR_0013s03080	POPTR_0013s03080 (9)	scaffold_13:1875864-1877148(-) (9)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.92942.2.A1_s_at	A	A1TS	POPTR_0002s02680	POPTR_0002s02680 (11)	scaffold_2:1585455-1585536(-) (11)	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92960.1.S1_at	A	A1TS	POPTR_0008s13300	POPTR_0008s13300 (9)	scaffold_8:8734330-8734627(-) (9)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92980.1.S1_at	A	A1TS	POPTR_0003s18280	POPTR_0003s18280 (11)	scaffold_3:17427700-17430886(+) (11)	NA	O09101	Phosphatidylinositol-glycan biosynthesis class F protein	AT1G16040.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580); Has 280 Blast hits to 280 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 111; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). "	LOC_Os03g03690.3	"glycosylphosphatidylinositol anchor biosynthesis protein 11, putative, expressed"	NA	NA	GO:0006506|GPI anchor biosynthetic process	NA	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.93007.2.S1_at	A	A1TS	POPTR_0006s12710	POPTR_0006s12710 (10)	scaffold_6:9861265-9861313(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93010.1.S1_at	A	A1TS	POPTR_0001s32190	POPTR_0001s32190 (11)	scaffold_1:30593015-30593555(-) (11)	NA	O14138	Protein midA homolog	AT1G04900.1	Protein of unknown function (DUF185) 	LOC_Os01g68390.1	"Uncharacterized ACR, COG1565 containing protein, putative, expressed"	AC229699_21.1	Protein of unknown function DUF185 AC229699.6 84686-78510 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93019.1.S1_s_at	A	A1TS	POPTR_0009s07250	POPTR_0009s07250 (11)	scaffold_9:6822959-6823500(+) (11)	NA	NA	NA	AT2G26840.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43910.1); Has 835 Blast hits to 835 proteins in 26 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 2; Other Eukaryotes - 768 (source: NCBI BLink). 	LOC_Os01g16340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93020.1.S1_at	A	A1TS	POPTR_0003s19000	POPTR_0003s19000 (10)	scaffold_3:17868314-17868740(+) (10)	NA	NA	NA	AT4G02550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 370 Blast hits to 300 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 354; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	NA	NA	Medtr8g044610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93037.1.S1_s_at	A	A1TS	POPTR_0002s20500	POPTR_0002s20500 (11)	scaffold_2:16579452-16580157(+) (11)	NA	Q04500	U3 small nucleolar RNA-associated protein 14	AT4G02400.1	U3 ribonucleoprotein (Utp) family protein 	LOC_Os03g22320.1	"utp14 protein, putative, expressed"	Medtr8g068330.1	Utp14 protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.93040.1.S1_at	A	A1TS	POPTR_0008s00320	POPTR_0008s00320 (11)	scaffold_8:96148-96890(-) (11)	POPTR_0006s02100 (8)//POPTR_0006s02120 (8)//POPTR_0015s13590 (7)	Q9Y5B6	GC-rich sequence DNA-binding factor 1	AT5G08550.1	GC-rich sequence DNA-binding factor-like protein 	LOC_Os03g63670.2	expressed protein	Medtr5g007630.1	GC-rich sequence DNA-binding factor-like 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.93043.1.S1_at	A	A1TS	POPTR_0011s10800	POPTR_0011s10800 (11)	scaffold_11:13383325-13383822(+) (11)	NA	Q9URW6	SH3 domain-containing protein PJ696.02	AT1G29800.2	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os02g13890.1	"FYVE zinc finger domain containing protein, expressed"	Medtr2g021650.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93050.1.S1_at	A	A1TS	POPTR_0012s07620	POPTR_0012s07620 (10)	scaffold_12:8536895-8537190(+) (10)	NA	P34909	General negative regulator of transcription subunit 4	AT5G62910.1	RING/U-box superfamily protein 	LOC_Os02g37030.1	"protein binding protein, putative, expressed"	Medtr6g009590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93051.1.S1_s_at	A	A1TS	POPTR_0006s25090	POPTR_0006s25090 (11)	scaffold_6:23547832-23548501(+) (11)	NA	P26683	RNA polymerase sigma factor rpoD	AT3G53920.1	RNApolymerase sigma-subunit C 	LOC_Os05g51150.1	"RNA polymerase sigma factor, putative, expressed"	Medtr1g008400.1	"Sigma factor, ECF; Peptidase S1 and S6, chymotrypsin/Hap; Winged helix repressor DNA-binding; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.93053.1.S1_at	A	A1TS	POPTR_0001s06680	POPTR_0001s06680 (10)	scaffold_1:5111749-5112098(-) (10)	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT5G13530.1	protein kinases;ubiquitin-protein ligases 	LOC_Os05g32570.1	"RING E3 ligase protein, putative, expressed"	Medtr3g005700.1	"Protein kinase; NADH dehydrogenase (ubiquinone), chloroplast chain 5, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.93055.1.S1_at	A	A1TS	POPTR_0006s05160	POPTR_0006s05160 (10)	scaffold_6:3607480-3608575(-) (10)	NA	P72749	GTP-binding protein TypA/BipA homolog	AT5G13650.1	elongation factor family protein 	LOC_Os02g18450.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.93077.1.S1_s_at	A	A1TS	POPTR_0001s01090	POPTR_0001s01090 (11)	scaffold_1:859047-859905(-) (11)	NA	Q9ZPR1	Cell division control protein 48 homolog B	AT2G03670.1	cell division cycle 48B 	LOC_Os04g42110.1	"cell division control protein 48 homolog B, putative, expressed"	Medtr7g105950.2	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.93091.1.S1_at	A	A1MS	POPTR_0001s30070	POPTR_0001s30070 (10)	scaffold_1:28661655-28661933(+) (10)	NA	P34409	DNA polymerase kappa	AT1G49980.1	DNA/RNA polymerases superfamily protein 	LOC_Os03g42010.1	"DNA-directed polymerase, putative, expressed"	Medtr5g005380.1	UMUC-like DNA-repair protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
PtpAffx.93097.1.A1_at	A	A1TS	POPTR_0016s01510	POPTR_0016s01510 (9)	scaffold_16:693571-694118(+) (9)	NA	NA	NA	AT5G20130.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g39474.1	expressed protein	Medtr8g147740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9312.1.A1_at	A	A1TS	POPTR_0006s27480	POPTR_0006s27480 (11)	scaffold_6:25368338-25368852(-) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr3g137750.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9312.2.A1_at	A	A1MS	POPTR_0018s02140	POPTR_0018s02140 (11)	scaffold_18:1901996-1902140(-) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr3g137750.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93127.1.S1_at	A	A1TS	POPTR_0014s09330	POPTR_0014s09330 (9)	scaffold_14:6925655-6925820(-) (9)	NA	Q9FFQ1	DEAD-box ATP-dependent RNA helicase 31	AT5G63630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g43120.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.93131.1.S1_at	A	A1TS	POPTR_0010s10300	POPTR_0010s10300 (10)	scaffold_10:10845976-10846686(-) (10)	NA	P00693	Alpha-amylase type A isozyme	AT1G69830.1	alpha-amylase-like 3 	LOC_Os01g51754.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
PtpAffx.93132.1.S1_s_at	A	A1TS	POPTR_0013s05860	POPTR_0013s05860 (11)	scaffold_13:4233380-4233870(-) (11)	NA	P16157	Ankyrin-1	AT5G13530.2	protein kinases;ubiquitin-protein ligases 	LOC_Os03g45290.1	"ankyrin repeat domain-containing protein 50, putative, expressed"	Medtr1g110930.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.93133.1.S1_at	A	A1TS	POPTR_0004s23630	POPTR_0004s23630 (11)	scaffold_4:22281323-22281365(+) (11)	NA	NA	NA	AT4G18530.1	Protein of unknown function (DUF707) 	LOC_Os01g69050.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g005170.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93133.1.S1_s_at	A	A1TS	POPTR_0004s23630	POPTR_0004s23630 (11)	scaffold_4:22282102-22284108(+) (11)	NA	NA	NA	AT4G18530.1	Protein of unknown function (DUF707) 	LOC_Os01g69050.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g005170.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93136.1.S1_at	A	A1TS	POPTR_0004s16895	POPTR_0004s16895 (11)	scaffold_4:17270849-17271393(-) (11)	NA	Q04832	DNA-binding protein HEXBP	AT1G75560.2	zinc knuckle (CCHC-type) family protein 	LOC_Os10g39820.1	"zinc knuckle domain containing protein, expressed"	Medtr3g162980.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.93149.2.S1_at	A	A1TS	POPTR_0001s33800	POPTR_0001s33800 (11)	scaffold_1:31958190-31958323(-) (11)	NA	B5FZ63	Enhancer of yellow 2 transcription factor homolog	AT3G27100.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g69110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9315.1.S1_at	A	A1TS	POPTR_0017s12070	POPTR_0017s12070 (11)	scaffold_17:12212599-12212985(-) (11)	NA	P0C8Q9	Uncharacterized protein At5g19025	AT3G01170.1	Ribosomal protein L34e superfamily protein 	LOC_Os05g40950.1	"pentatricopeptide repeat-containing protein, putative, expressed"	Medtr6g012930.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9315.2.S1_at	A	A1TS	POPTR_0004s12110	POPTR_0004s12110 (11)	scaffold_4:11041720-11041840(-) (11)	NA	P0C8Q9	Uncharacterized protein At5g19025	AT3G01170.1	Ribosomal protein L34e superfamily protein 	LOC_Os05g40950.1	"pentatricopeptide repeat-containing protein, putative, expressed"	Medtr6g012930.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9317.1.S1_at	A	A1TS	POPTR_0016s12110	POPTR_0016s12110 (11)	scaffold_16:11426576-11427106(+) (11)	NA	O80439	"30S ribosomal protein S31, chloroplastic"	AT2G38140.1	plastid-specific ribosomal protein 4 	LOC_Os05g09400.3	"30S ribosomal protein S31, chloroplast precursor, putative, expressed"	Medtr4g012890.1	"30S ribosomal protein S31, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.932.2.A1_at	A	A1TS	POPTR_0019s08610	POPTR_0019s08610 (11)	scaffold_19:10115357-10115485(-) (11)	NA	O65333	Chalcone--flavonone isomerase	AT5G05270.2	Chalcone-flavanone isomerase family protein 	LOC_Os12g02370.3	"chalcone--flavonone isomerase, putative, expressed"	Medtr1g146220.1	Chalcone-flavanone isomerase 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
PtpAffx.93200.1.S1_at	A	A1TS	POPTR_0016s04130	POPTR_0016s04130 (11)	scaffold_16:2345467-2350157(+) (11)	POPTR_0006s04390 (6)	Q05932	"Folylpolyglutamate synthase, mitochondrial"	AT3G10160.1	DHFS-FPGS homolog C 	LOC_Os03g02030.1	"folylpolyglutamate synthase, mitochondrial precursor, putative, expressed"	Medtr5g088540.1	Folylpolyglutamate synthetase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93200.2.S1_s_at	A	A1MS	POPTR_0016s04130	POPTR_0016s04130 (11)	scaffold_16:2343367-2343777(+) (11)	NA	Q05932	"Folylpolyglutamate synthase, mitochondrial"	AT3G10160.1	DHFS-FPGS homolog C 	LOC_Os03g02030.1	"folylpolyglutamate synthase, mitochondrial precursor, putative, expressed"	Medtr5g088540.1	Folylpolyglutamate synthetase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93201.1.S1_at	A	A1TS	POPTR_0004s06670	POPTR_0004s06670 (11)	scaffold_4:5337768-5347629(-) (11)	POPTR_0004s06660 (7)//POPTR_0004s06680 (6)	Q9FMW6	GEM-like protein 6	AT5G23350.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os02g42440.1	"GEM, putative, expressed"	Medtr1g143990.1	Isopenicillin N synthetase; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9325.2.A1_at	A	A1TS	POPTR_0001s16980	POPTR_0001s16980 (11)	scaffold_1:13799301-13800811(-) (11)	NA	Q1SF86	Ubiquitin-like protein ATG12	AT1G54210.1	Ubiquitin-like superfamily protein 	LOC_Os06g10340.1	"autophagy-related protein 12, putative, expressed"	Medtr8g024660.1	Autophagy protein Apg12 	GO:0023052|signaling||GO:0000045|autophagic vacuole assembly||GO:0071496|cellular response to external stimulus||GO:0007033|vacuole organization	NA	GO:0005737|cytoplasm
PtpAffx.93252.1.S1_at	A	A1TS	POPTR_0005s06300	POPTR_0005s06300 (11)	scaffold_185:1426-1597(-) (11)//scaffold_5:4142467-4142638(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.93252.1.S1_s_at	A	A2TS	POPTR_0005s06300	POPTR_0005s06300 (11)//POPTR_0185s00210 (11)	scaffold_185:1646-1989(-) (11)//scaffold_185:21096-21439(-) (11)//scaffold_5:4142687-4143030(-) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.93255.1.A1_at	A	A1MS	POPTR_0001s42170	POPTR_0001s42170 (9)	scaffold_1:41923230-41923631(+) (9)	NA	NA	NA	AT2G36740.1	sequence-specific DNA binding transcription factors;DNA binding;DNA binding 	LOC_Os08g09320.1	"YL1 nuclear protein C-terminal domain containing protein, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.93264.1.A1_at	A	A1TS	POPTR_0016s01120	POPTR_0016s01120 (10)	scaffold_16:458794-460630(+) (10)	NA	NA	NA	AT4G16460.3	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9327.2.A1_at	A	A1TS	POPTR_0006s25870	POPTR_0006s25870 (11)	scaffold_6:24215490-24215767(+) (11)	NA	Q7DLR9	Proteasome subunit beta type-4	AT1G56450.1	20S proteasome beta subunit G1 	LOC_Os09g33986.2	"peptidase, T1 family, putative, expressed"	Medtr6g028430.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.9327.3.A1_a_at	A	A1TS	POPTR_0018s00740	POPTR_0018s00740 (11)	scaffold_18:646552-648141(+) (11)	NA	Q7DLR9	Proteasome subunit beta type-4	AT1G56450.1	20S proteasome beta subunit G1 	LOC_Os09g33986.2	"peptidase, T1 family, putative, expressed"	Medtr6g028430.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.93278.1.A1_at	A	A1TS	POPTR_0001s12540	POPTR_0001s12540 (11)	scaffold_1:9726551-9726953(+) (11)	NA	NA	NA	AT5G47860.1	Protein of unknown function (DUF1350) 	LOC_Os04g33280.2	expressed protein	Medtr8g083960.1	Protein of unknown function DUF1350 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93279.1.A1_at	A	A1TS	POPTR_0010s05090	POPTR_0010s05090 (10)	scaffold_10:6502870-6503198(+) (10)	NA	Q6NKP9	AMSH-like ubiquitin thiolesterase 2	AT1G10600.1	associated molecule with the SH3 domain of STAM 2 	LOC_Os01g47262.1	"AMSH-like protease, putative, expressed"	Medtr5g035570.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93292.1.A1_at	A	A1MS	POPTR_0014s12330	POPTR_0014s12330 (9)	scaffold_14:9106764-9107715(-) (9)	NA	P48768	Sodium/calcium exchanger 2	AT2G47600.1	magnesium/proton exchanger 	LOC_Os11g43860.2	"sodium/calcium exchanger protein, putative, expressed"	Medtr1g108330.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.93295.1.S1_at	A	A1TS	POPTR_0005s09010	POPTR_0005s09010 (10)	scaffold_5:6325853-6327243(+) (10)	NA	P93736	Valyl-tRNA synthetase	AT1G14610.1	valyl-tRNA synthetase / valine--tRNA ligase (VALRS) 	LOC_Os03g48850.2	"valyl-tRNA synthetase, putative, expressed"	Medtr1g129510.1	"Isoleucyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.93307.1.A1_at	A	A1TA	POPTR_0016s11621	POPTR_0016s11621 (9)	scaffold_16:10843479-10843972(-) (9)	NA	P25851	"Fructose-1,6-bisphosphatase, chloroplastic"	AT3G54050.2	high cyclic electron flow 1 	LOC_Os03g16050.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.93325.1.A1_at	A	A1TS	POPTR_0009s11780	POPTR_0009s11780 (11)	scaffold_9:9710715-9711479(+) (11)	NA	Q8VY05	SWI/SNF complex subunit SWI3D	AT4G34430.3	DNA-binding family protein 	LOC_Os03g51220.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed"	Medtr4g095380.1	"Zinc finger, ZZ-type; SWIRM; Homeodomain-related "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.9334.1.S1_at	A	A1TS	POPTR_0006s20440	POPTR_0006s20440 (11)	scaffold_6:19462795-19463098(+) (11)	NA	P48000	Homeobox protein knotted-1-like 3	AT5G25220.2	KNOTTED1-like homeobox gene 3 	LOC_Os08g19650.2	"homeobox protein knotted-1, putative, expressed"	Medtr3g137900.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.93358.1.A1_at	A	A1TA	POPTR_0007s04930	POPTR_0007s04930 (9)	scaffold_7:3115194-3115378(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93364.1.A1_at	A	A1TS	POPTR_0001s04070	POPTR_0001s04070 (11)	scaffold_1:3216033-3217364(+) (11)	NA	NA	NA	AT5G56520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55365.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr4g137000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93387.1.S1_at	A	A1TS	POPTR_0006s15450	POPTR_0006s15450 (11)	scaffold_6:12834734-12834938(-) (11)	NA	NA	NA	AT5G56780.1	effector of transcription2 	LOC_Os07g39800.1	"transcription repressor HOTR, putative, expressed"	Medtr6g092700.1	"transcripteion factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9339.1.S1_at	A	A1TS	POPTR_0010s19270	POPTR_0010s19270 (11)	scaffold_10:17236861-17237417(+) (11)	NA	C0LGQ4	Probable LRR receptor-like serine/threonine-protein kinase MRH1	AT4G18640.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g48390.2	expressed protein	Medtr1g102890.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.935.1.S1_at	A	A1TS	POPTR_0008s10680	POPTR_0008s10680 (10)	scaffold_8:6688677-6688991(-) (10)	NA	Q5SP90	Serine/threonine-protein phosphatase 4 regulatory subunit 3	AT3G06670.1	binding 	LOC_Os01g23590.1	"suppressor of Mek, putative, expressed"	Medtr8g137830.1	Protein of unknown function DUF625 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.935.2.S1_s_at	A	A1TS	POPTR_0010s15210	POPTR_0010s15210 (11)	scaffold_10:14552304-14552558(+) (11)	NA	Q5SP90	Serine/threonine-protein phosphatase 4 regulatory subunit 3	AT3G06670.1	binding 	LOC_Os01g23590.1	"suppressor of Mek, putative, expressed"	Medtr8g137830.1	Protein of unknown function DUF625 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93545.1.A1_at	A	A1TS	POPTR_0003s09600	POPTR_0003s09600 (11)	scaffold_3:10893544-10894056(-) (11)	NA	NA	NA	AT1G32160.1	Protein of unknown function (DUF760) 	LOC_Os04g50860.1	expressed protein	Medtr5g028160.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93550.1.A1_at	A	A1TS	POPTR_0013s06160	POPTR_0013s06160 (9)	scaffold_13:4552026-4554062(+) (9)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os02g41910.1	"OsFBO12 - F-box and other domain containing protein, expressed"	Medtr3g016080.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93557.1.A1_at	A	A1TS	POPTR_0015s11510	POPTR_0015s11510 (9)	scaffold_15:12089269-12089489(-) (9)	NA	P29136	Metalloendoproteinase 1	AT1G24140.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g037460.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.93558.1.A1_at	A	A1MS	POPTR_0002s01180	POPTR_0002s01180 (11)	scaffold_2:625430-625848(+) (11)	NA	Q94FT4	Salutaridinol 7-O-acetyltransferase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g10420.1	"transferase family domain containing protein, expressed"	Medtr5g092230.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.93575.1.A1_at	A	A1TS	POPTR_0017s12430	POPTR_0017s12430 (11)	scaffold_17:12590842-12591025(-) (11)	NA	Q9ZQ70	Probable WRKY transcription factor 3	AT2G03340.1	WRKY DNA-binding protein 3 	LOC_Os12g32250.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr7g011100.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.936.1.S1_s_at	A	A1TS	POPTR_0002s10000	POPTR_0002s10000 (11)	scaffold_2:7182715-7183972(+) (11)	NA	P46266	14-3-3-like protein	AT1G78300.1	general regulatory factor 2 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.936.2.A1_at	A	A1TS	POPTR_0005s17300	POPTR_0005s17300 (11)	scaffold_5:14612237-14612299(+) (11)	NA	P46266	14-3-3-like protein	AT1G78300.1	general regulatory factor 2 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.936.4.S1_s_at	A	A1TS	POPTR_0002s10000	POPTR_0002s10000 (11)	scaffold_2:7183508-7183770(+) (11)	NA	P46266	14-3-3-like protein	AT1G78300.1	general regulatory factor 2 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.93600.1.A1_at	A	A1TS	POPTR_0009s07250	POPTR_0009s07250 (9)	scaffold_9:6825537-6826242(+) (9)	NA	NA	NA	AT2G26840.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43910.1); Has 835 Blast hits to 835 proteins in 26 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 2; Other Eukaryotes - 768 (source: NCBI BLink). 	LOC_Os01g16340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93616.1.A1_at	A	A1TS	POPTR_0007s09840	POPTR_0007s09840 (11)	scaffold_7:9387973-9388555(+) (11)	NA	Q6YXY2	Probable histone acetyltransferase HAC-like 1	AT5G67480.1	BTB and TAZ domain protein 4 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr5g015750.1	"Zinc finger, TAZ-type; BTB/POZ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.93652.1.S1_s_at	A	A1TS	POPTR_0014s14370	POPTR_0014s14370 (11)	scaffold_14:10523468-10523949(-) (11)	NA	Q9MA41	Chitinase-like protein 1	AT1G05850.1	Chitinase family protein 	LOC_Os09g32080.2	"CHIT13 - Chitinase family protein precursor, expressed"	Medtr7g021450.1	"Glycoside hydrolase, family 19 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
PtpAffx.93656.1.S1_s_at	A	A1TS	POPTR_0001s09200	POPTR_0001s09200 (11)	scaffold_1:7040672-7041126(-) (11)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.93659.1.S1_s_at	A	A1TS	POPTR_0015s10480	POPTR_0015s10480 (11)	scaffold_15:11392796-11393439(+) (11)	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
PtpAffx.93684.1.S1_at	A	A1TS	POPTR_0007s13800	POPTR_0007s13800 (11)	scaffold_7:13833443-13834109(+) (11)	NA	Q9SJU4	"Probable fructose-bisphosphate aldolase 1, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.93687.1.S1_s_at	A	A1TS	POPTR_0012s13880	POPTR_0012s13880 (11)	scaffold_12:13838074-13838384(-) (11)	NA	Q9FJ90	Ethylene-responsive transcription factor ERF025	AT5G52020.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g45420.1	"AP2 domain containing protein, expressed"	Medtr1g129460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.93735.1.S1_s_at	A	A1TS	POPTR_0005s21000	POPTR_0005s21000 (11)	scaffold_5:20129065-20129776(-) (11)	NA	Q84VY3	"Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic"	AT1G43800.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os01g65830.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr3g125150.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0045300|acyl-[acyl-carrier-protein] desaturase activity	NA
PtpAffx.93744.1.S1_at	A	A1TS	POPTR_0017s05480	POPTR_0017s05480 (11)	scaffold_17:4342129-4343872(+) (11)	NA	NA	NA	AT1G08760.1	Plant protein of unknown function (DUF936) 	LOC_Os08g42870.1	expressed protein	Medtr4g092550.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93749.1.S1_at	A	A1TS	POPTR_0002s24700	POPTR_0002s24700 (11)	scaffold_2:21987178-21989022(-) (11)	NA	Q42712	"Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment)"	AT3G25110.1	fatA acyl-ACP thioesterase 	LOC_Os09g32760.1	"acyl-ACP thioesterase, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9376.1.S1_at	A	A1TS	POPTR_0008s12320	POPTR_0008s12320 (11)	scaffold_8:7951207-7951734(+) (11)	NA	NA	NA	AT1G68220.1	Protein of unknown function (DUF1218) 	LOC_Os08g16130.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9376.2.A1_at	A	A1TS	POPTR_0010s13040	POPTR_0010s13040 (11)	scaffold_10:12938661-12939115(-) (11)	NA	NA	NA	AT1G68220.1	Protein of unknown function (DUF1218) 	LOC_Os08g16130.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93776.1.S1_at	A	A1TS	POPTR_0010s01650	POPTR_0010s01650 (10)	scaffold_10:1842982-1843247(-) (10)	NA	Q42384	Protein pleiotropic regulatory locus 1	AT4G15900.1	pleiotropic regulatory locus 1 	LOC_Os03g21990.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g024610.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93776.1.S1_s_at	A	A1TS	POPTR_0010s01650	POPTR_0010s01650 (11)	scaffold_10:1842927-1843685(-) (11)	NA	Q42384	Protein pleiotropic regulatory locus 1	AT4G15900.1	pleiotropic regulatory locus 1 	LOC_Os03g21990.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g024610.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93780.1.S1_at	A	A1TS	POPTR_0001s25590	POPTR_0001s25590 (11)	scaffold_1:24665320-24665780(+) (11)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93781.1.S1_at	A	A1TS	POPTR_0004s11550	POPTR_0004s11550 (11)	scaffold_4:10338893-10339101(+) (11)	POPTR_0017s13080 (6)	Q9FVW3	Probable esterase At1g33990	AT3G29770.1	methyl esterase 11 	LOC_Os07g41230.1	"esterase, putative, expressed"	Medtr3g012890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.938.1.A1_at	A	A1TS	POPTR_0013s03800	POPTR_0013s03800 (11)	scaffold_13:2468647-2469139(+) (11)	NA	Q99090	Light-inducible protein CPRF2	AT5G28770.2	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.9380.1.S1_at	A	A1TS	POPTR_0001s23020	POPTR_0001s23020 (11)	scaffold_1:22064299-22064851(-) (11)	NA	Q9T091	Vacuolar protein sorting-associated protein 26	AT5G53530.1	vacuolar protein sorting 26A 	LOC_Os11g41130.1	"vacuolar protein sorting-associated protein 26, putative, expressed"	NA	NA	GO:0007034|vacuolar transport	NA	GO:0030904|retromer complex
PtpAffx.93820.1.S1_at	A	A1TS	POPTR_0010s07950	POPTR_0010s07950 (10)	scaffold_10:8906560-8907007(+) (10)	NA	NA	NA	AT3G23440.1	embryo sac development arrest 6 	LOC_Os04g43310.1	expressed protein	Medtr1g090140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93870.1.S1_at	A	A1TS	POPTR_0017s14150	POPTR_0017s14150 (11)	scaffold_17:14323469-14325116(+) (11)	NA	NA	NA	AT5G15880.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g02130.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93878.1.S1_at	A	A2TS	POPTR_0011s02250	POPTR_0011s08230 (11)//POPTR_0011s02250 (11)	scaffold_11:2026136-2028490(+) (11)//scaffold_11:9193873-9198181(-) (11)	NA	NA	NA	AT1G30130.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g05870.1	expressed protein	Medtr2g024460.1	Protein of unknown function DUF1365 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93900.1.S1_at	A	A1TS	POPTR_0009s13840	POPTR_0009s13840 (10)	scaffold_9:10951234-10951575(-) (10)	NA	NA	NA	AT2G20940.1	Protein of unknown function (DUF1279) 	LOC_Os09g36982.1	"protein of unknown function DUF1279 domain containing protein, expressed"	Medtr7g092620.1	Protein of unknown function DUF1279 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93908.1.S1_at	A	A1TS	POPTR_0016s12880	POPTR_0016s12880 (11)	scaffold_16:12229650-12231512(+) (11)	NA	NA	NA	AT3G51780.1	BCL-2-associated athanogene 4 	LOC_Os01g61500.1	"BAG domain containing protein, expressed"	Medtr7g075760.1	"Ubiquitin; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.93912.1.S1_at	A	A1TS	POPTR_0011s04120	POPTR_0011s04120 (10)	scaffold_11:4175809-4176165(-) (10)	NA	Q8GWP0	Transcription factor MYB39	AT4G21440.1	MYB-like 102 	LOC_Os07g37210.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93915.1.S1_at	A	A1TS	POPTR_0016s14170	POPTR_0016s14170 (9)	scaffold_16:13412864-13413100(+) (9)	NA	NA	NA	AT1G06920.1	ovate family protein 4 	LOC_Os01g60810.1	"DUF623 domain containing protein, expressed"	Medtr5g083050.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9394.1.A1_at	A	A1TS	POPTR_0006s23050	POPTR_0006s23050 (9)	scaffold_6:21890725-21891112(-) (10)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G53520.1	UDP-glucuronic acid decarboxylase 1 	LOC_Os01g62020.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.94034.1.S1_at	A	A1TS	POPTR_0010s13900	POPTR_0010s13900 (11)	scaffold_10:13609201-13609538(-) (11)	NA	Q940D0	Two-component response regulator ARR1	AT1G25550.1	myb-like transcription factor family protein 	LOC_Os02g22020.1	"MYB family transcription factor, putative, expressed"	Medtr5g068770.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94038.1.S1_at	A	A1TS	POPTR_0012s02840	POPTR_0012s02840 (10)	scaffold_12:2311061-2311533(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr3g122790.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94041.1.S1_s_at	A	A1TS	POPTR_0006s17920	POPTR_0006s17920 (11)	scaffold_6:16181821-16182628(-) (11)	NA	NA	NA	AT5G57340.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr2g041600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94052.1.S1_at	A	A1TS	POPTR_0006s14680	POPTR_0006s14680 (11)	scaffold_6:12051868-12052828(+) (11)	NA	P48980	Beta-galactosidase	AT3G13750.1	beta galactosidase 1 	LOC_Os01g39830.1	"beta-galactosidase, putative, expressed"	Medtr2g121320.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.9409.1.S1_a_at	A	A1TS	POPTR_0014s14450	POPTR_0014s14450 (11)	scaffold_14:10588344-10588737(-) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT5G56190.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g07540.2	"WD-40 repeat family protein, putative, expressed"	Medtr7g022140.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9409.2.S1_a_at	A	A1TS	POPTR_0014s14450	POPTR_0014s14450 (11)	scaffold_14:10588810-10588844(-) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT5G56190.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g07540.2	"WD-40 repeat family protein, putative, expressed"	Medtr7g022140.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9409.2.S1_at	A	A1TS	POPTR_0002s23480	POPTR_0002s23480 (9)	scaffold_2:21002981-21003409(-) (9)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g07540.2	"WD-40 repeat family protein, putative, expressed"	Medtr7g022140.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9409.4.S1_at	A	A1TS	POPTR_0014s14470	POPTR_0014s14470 (11)	scaffold_14:10593441-10593566(-) (10)//scaffold_14:10604205-10605900(-) (11)	NA	NA	NA	AT5G56190.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g07540.2	"WD-40 repeat family protein, putative, expressed"	Medtr7g022140.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9409.6.S1_a_at	A	A1TS	POPTR_0014s14470	POPTR_0014s14470 (11)	scaffold_14:10605933-10606243(-) (11)	NA	NA	NA	AT5G56190.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g07540.2	"WD-40 repeat family protein, putative, expressed"	Medtr7g022140.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94095.1.S1_at	A	A1TS	POPTR_0002s24800	POPTR_0002s24800 (11)	scaffold_2:22057389-22058958(-) (11)	NA	O94260	Putative G3BP-like protein	AT3G25150.2	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os04g30430.1	"nuclear transport factor 2, putative, expressed"	Medtr7g062040.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.94104.1.S1_at	A	A1TS	POPTR_0001s36250	POPTR_0001s36250 (10)	scaffold_1:34785206-34786195(+) (10)	NA	NA	NA	AT3G01720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). 	LOC_Os01g67750.1	expressed protein	AC145328_11.1	hypothetical protein AC145328.23 57989-50900 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9411.1.A1_at	A	A1TS	POPTR_0008s05460	POPTR_0008s05460 (11)	scaffold_8:3157990-3159265(-) (11)	NA	Q5EAD5	Geranylgeranyl transferase type-1 subunit beta	AT2G39550.1	Prenyltransferase family protein 	LOC_Os01g05680.1	"geranylgeranyl transferase type-1 subunit beta, putative"	Medtr7g025790.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.94118.1.S1_at	A	A1TS	POPTR_0013s01050	POPTR_0013s01050 (11)	scaffold_13:578614-579143(-) (11)	NA	NA	NA	AT1G56420.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12530.1); Has 58 Blast hits to 58 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os12g37390.1	expressed protein	Medtr1g100530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94154.1.S1_at	A	A1TS	POPTR_0005s26290	POPTR_0005s26290 (9)	scaffold_5:24354355-24354792(-) (9)	NA	NA	NA	AT4G24200.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os06g42490.1	expressed protein	Medtr1g031440.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.94207.2.A1_at	A	A1MA	POPTR_0002s11430	POPTR_0002s11430 (11)	scaffold_2:8465925-8466548(-) (11)	NA	Q9M439	"Branched-chain-amino-acid aminotransferase 2, chloroplastic"	AT1G10070.2	branched-chain amino acid transaminase 2 	LOC_Os05g48450.6	"aminotransferase domain containing protein, putative, expressed"	Medtr5g015110.1	Branched-chain amino acid aminotransferase II 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.94220.1.A1_at	A	A1TS	POPTR_1837s00200	POPTR_1837s00200 (11)	scaffold_1837:1163-1527(-) (11)	NA	P93733	Phospholipase D beta 1	AT2G42010.1	phospholipase D beta 1 	LOC_Os03g02740.1	"phospholipase D, putative, expressed"	Medtr5g011200.1	C2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.94241.1.S1_at	A	A1TS	POPTR_0008s03660	POPTR_0008s03660 (10)	scaffold_8:1990705-1992011(-) (11)	NA	Q9LTC0	Probable receptor-like protein kinase At5g47070	AT3G09830.2	Protein kinase superfamily protein 	LOC_Os02g57420.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr1g076510.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.94296.1.S1_s_at	A	A1TS	POPTR_0006s04610	POPTR_0006s04610 (11)	scaffold_6:3159762-3160534(-) (11)	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT4G20990.1	alpha carbonic anhydrase 4 	LOC_Os08g36630.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.943.1.A1_at	A	A1TS	POPTR_0108s00260	POPTR_0108s00260 (9)	scaffold_108:52457-52874(+) (9)//scaffold_3:20072980-20073397(-) (9)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g009850.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94300.1.S1_s_at	A	A1TS	POPTR_0014s02580	POPTR_0014s02580 (11)	scaffold_14:2151162-2152387(+) (11)	NA	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os02g15340.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.94313.1.S1_s_at	A	A1TS	POPTR_0001s46540	POPTR_0001s46540 (11)	scaffold_1:46918938-46919547(-) (11)	NA	O64885	Protein BCCIP homolog	AT2G44510.1	CDK inhibitor P21 binding protein 	LOC_Os03g63690.1	"BCCIP, putative, expressed"	Medtr3g142570.1	"Protein BCCIP homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94379.1.S1_at	A	A1TS	POPTR_0002s06100	POPTR_0002s06100 (9)	scaffold_2:4089258-4089450(+) (9)	NA	NA	NA	AT1G06530.1	Tropomyosin-related 	NA	NA	Medtr5g099020.1	myosin heavy chain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94386.1.S1_at	A	A1TS	POPTR_0011s16030	POPTR_0011s16030 (11)	scaffold_11:17998304-17999750(-) (11)	NA	Q3UKJ7	WD40 repeat-containing protein SMU1	AT1G73720.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g21940.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g068820.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94414.1.S1_at	A	A1TS	POPTR_0005s03880	POPTR_0005s03880 (11)	scaffold_5:2575757-2576374(+) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT1G54820.1	Protein kinase superfamily protein 	LOC_Os05g33080.1	"serine/threonine-protein kinase, putative, expressed"	Medtr1g099220.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.94424.1.S1_s_at	A	A1TS	POPTR_0004s21500	POPTR_0004s21500 (11)	scaffold_4:20605903-20606019(+) (11)	NA	Q9UMX0	Ubiquilin-1	AT2G17200.1	ubiquitin family protein 	LOC_Os10g39620.2	"ubiquitin family protein, putative, expressed"	Medtr5g023730.1	UV excision repair protein Rad23; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94440.1.S1_s_at	A	A1TS	POPTR_0002s03340	POPTR_0002s03340 (11)	scaffold_2:2060034-2060703(-) (11)	NA	Q40517	Mitogen-activated protein kinase homolog NTF3	AT1G10210.2	mitogen-activated protein kinase 1 	LOC_Os06g48590.2	"CGMC_MAPKCMGC_2_SLT2y_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g134400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.94460.1.S1_s_at	A	A1TS	POPTR_0010s19320	POPTR_0010s19320 (11)	scaffold_10:17272506-17274766(+) (11)	NA	NA	NA	AT3G56040.1	UDP-glucose pyrophosphorylase 3 	LOC_Os05g39230.1	"low photochemical bleaching 1 protein, putative, expressed"	Medtr3g094600.1	Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94471.1.S1_at	A	A1TS	POPTR_0009s08760	POPTR_0009s08760 (10)	scaffold_9:7904063-7905290(-) (10)	NA	Q112K0	Aspartyl-tRNA synthetase	AT4G33760.1	"tRNA synthetase class II (D, K and N) family protein "	LOC_Os01g06020.1	"aspartyl-tRNA synthetase, putative, expressed"	Medtr8g138390.1	"GAD; nucleic acid binding, OB-fold, tRNA/helicase-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.94481.1.S1_at	A	A1MS	POPTR_0001s34610	POPTR_0001s34610 (11)	scaffold_1:32845571-32845712(+) (11)	NA	Q9FL07	RING-H2 finger protein ATL46	AT5G40250.1	RING/U-box superfamily protein 	LOC_Os02g50930.1	"RING-H2 finger protein, putative, expressed"	Medtr5g035920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94481.1.S1_s_at	A	A1TS	POPTR_0001s34610	POPTR_0001s34610 (11)	scaffold_1:32845701-32846002(+) (11)	NA	Q9FL07	RING-H2 finger protein ATL46	AT5G40250.1	RING/U-box superfamily protein 	LOC_Os02g50930.1	"RING-H2 finger protein, putative, expressed"	Medtr5g035920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94498.1.A1_at	A	A1TS	POPTR_0014s18440	POPTR_0014s18440 (11)	scaffold_14:15634780-15635230(-) (11)	NA	NA	NA	AT4G28590.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). 	LOC_Os01g61320.2	"thioredoxin, putative, expressed"	Medtr4g134500.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9451.1.A1_at	A	A1TS	POPTR_0001s25360	POPTR_0001s25360 (9)	scaffold_1:24513736-24513821(+) (9)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT5G59010.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94527.1.S1_at	A	A1TS	POPTR_0002s17990	POPTR_0002s17990 (11)	scaffold_2:13891270-13891551(+) (11)	NA	Q9H0Z9	RNA-binding protein 38	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	CU179634_3.1	RNA-binding region RNP-1 (RNA recognition motif) CU179634.6 7913-3383 H EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.94546.1.A1_a_at	A	A1TS	POPTR_0003s14610	POPTR_0003s14610 (11)	scaffold_3:14637327-14637764(+) (11)	NA	NA	NA	AT5G41960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g49610.1	expressed protein	Medtr5g008290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94574.1.A1_a_at	A	A1TS	POPTR_0001s25650	POPTR_0001s25650 (11)	scaffold_1:24713016-24713366(+) (11)	NA	O82391	Josephin-like protein	AT2G29640.1	JOSEPHIN-like protein 	LOC_Os03g15850.1	"josephin, putative, expressed"	Medtr5g078350.1	Machado-Joseph disease protein MJD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94576.1.A1_a_at	A	A2TS	POPTR_0008s02360	POPTR_0008s02360 (11)//POPTR_0008s02390 (11)	scaffold_8:1132694-1132845(+) (11)//scaffold_8:1154046-1154197(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94576.1.A1_at	A	A1TS	POPTR_0008s02390	POPTR_0008s02390 (11)	scaffold_8:1153816-1154292(+) (11)	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os11g08020.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g028530.1	"ankyrin repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94576.2.A1_at	A	A1TS	POPTR_0008s02360	POPTR_0008s02360 (11)	scaffold_8:1131583-1132695(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9459.1.S1_at	A	A1TS	POPTR_0005s27540	POPTR_0005s27540 (11)	scaffold_5:25154013-25154454(-) (11)	NA	P32361	Serine/threonine-protein kinase/endoribonuclease IRE1	AT5G24360.1	inositol requiring 1-1 	LOC_Os07g28820.1	"ribonuclease 2-5A family protein, expressed"	Medtr5g024470.1	Protein kinase; PUG 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006397|mRNA processing	"GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0016891|""endoribonuclease activity, producing 5'-phosphomonoesters"""	NA
PtpAffx.94602.1.A1_s_at	A	A1TS	POPTR_0004s05130	POPTR_0004s05130 (11)	scaffold_4:3877368-3878212(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94654.1.A1_at	A	A1TS	POPTR_0008s04930	POPTR_0008s04930 (10)	scaffold_8:2851037-2851627(-) (10)	NA	Q9FY46	"Sulfate transporter 4.1, chloroplastic"	AT5G13550.1	sulfate transporter 4.1 	LOC_Os09g06499.2	"sulfate transporter 4.1, chloroplast precursor, putative, expressed"	Medtr7g022760.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.94661.1.A1_at	A	A1TS	POPTR_0012s04760	POPTR_0012s04760 (11)	scaffold_12:4142642-4144033(+) (11)	NA	NA	NA	AT1G18060.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os01g03040.1	expressed protein	Medtr4g155570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9467.1.S1_at	A	A1TS	POPTR_0018s10870	POPTR_0018s10870 (11)	scaffold_18:11738195-11738564(-) (11)	NA	P47082	Vacuolar amino acid transporter 1	AT3G28960.1	Transmembrane amino acid transporter family protein 	LOC_Os04g38680.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g010050.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94693.1.A1_at	A	A1TS	POPTR_0010s22980	POPTR_0010s22980 (11)	scaffold_10:19679526-19680375(-) (11)	NA	Q88C93	Phosphomannomutase/phosphoglucomutase	AT5G17530.2	phosphoglucosamine mutase family protein 	LOC_Os07g26610.1	"phosphoglucomutase, putative, expressed"	Medtr1g120920.1	Phosphoglucosamine mutase 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.94716.1.A1_at	A	A1TS	POPTR_0005s03580	POPTR_0005s03580 (10)	scaffold_5:2407492-2408025(+) (10)	NA	Q06327	Lipoxygenase 1	AT1G55020.1	lipoxygenase 1 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr7g139190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.94726.1.A1_at	A	A1TS	POPTR_0007s11320	POPTR_0007s11320 (10)	scaffold_7:11687520-11687971(-) (11)	NA	P53681	CDPK-related protein kinase	AT3G50530.1	CDPK-related kinase 	LOC_Os07g44710.1	"CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g129190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.94753.1.A1_at	A	A2TS	POPTR_0005s21560	POPTR_0005s21560 (10)//POPTR_0005s21580 (10)	scaffold_5:20680904-20681431(+) (10)//scaffold_5:20694705-20695232(+) (10)	NA	Q3ECY6	Protein SET DOMAIN GROUP 41	AT1G43245.1	SET domain-containing protein 	LOC_Os04g34610.1	expressed protein	Medtr2g052530.1	"Protein SET DOMAIN GROUP 41, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94756.1.S1_at	A	A1TS	POPTR_0001s21680	POPTR_0001s21680 (10)	scaffold_1:20231470-20232464(-) (10)	NA	Q8BJ56	Patatin-like phospholipase domain-containing protein 2	AT1G33270.1	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 	LOC_Os11g34370.1	"phospholipase, patatin family, putative, expressed"	Medtr2g007800.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.94761.1.A1_s_at	A	A1TS	POPTR_0002s16430	POPTR_0002s16430 (11)	scaffold_2:12291604-12292456(-) (11)	NA	NA	NA	AT2G46100.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os04g48860.3	expressed protein	AC235567_1.1	"SOUL heme-binding protein, related AC235567.1 138-3392 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94770.1.A1_at	A	A1TS	POPTR_0011s11020	POPTR_0011s11020 (9)	scaffold_11:13716197-13717408(-) (9)	NA	P16273	Pathogen-related protein	AT1G78780.2	pathogenesis-related family protein 	LOC_Os01g53090.1	"pathogen-related protein, putative, expressed"	Medtr8g068150.1	"Pathogen-related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94773.1.A1_at	A	A1TS	POPTR_0005s00330	POPTR_0005s00330 (9)	scaffold_5:86708-87309(+) (9)	NA	Q6P988	Protein notum homolog	AT3G05910.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134700.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9478.1.S1_at	A	A1TS	POPTR_0010s07330	POPTR_0010s07330 (11)	scaffold_10:8432185-8432766(-) (11)	NA	NA	NA	AT4G13560.1	Late embryogenesis abundant protein (LEA) family protein 	NA	NA	Medtr1g066010.1	"Late embryogenesis abundant protein 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94786.1.A1_at	A	A1TS	POPTR_0002s04670	POPTR_0002s04670 (11)	scaffold_2:2908442-2908864(-) (11)	NA	Q9AR19	Histone acetyltransferase GCN5	AT3G54610.1	histone acetyltransferase of the GNAT family 1 	LOC_Os10g28040.1	"histone acetyltransferase GCN5, putative, expressed"	Medtr8g074500.1	GCN5-related N-acetyltransferase; Bromodomain 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.94789.1.A1_at	A	A1TS	POPTR_0008s16250	POPTR_0008s16250 (9)	scaffold_8:10876131-10876579(-) (9)	NA	Q8R1R3	"StAR-related lipid transfer protein 7, mitochondrial"	AT4G14500.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os07g08760.1	"START domain containing protein, putative, expressed"	Medtr5g007180.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94796.2.A1_s_at	A	A1TS	POPTR_0001s28810	POPTR_0001s28810 (9)	scaffold_1:27596766-27599536(+) (11)	NA	Q61545	RNA-binding protein EWS	AT5G58470.2	TBP-associated factor 15B 	LOC_Os01g07070.4	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g034290.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.94798.2.A1_a_at	A	A1TS	POPTR_0011s00970	POPTR_0011s00970 (11)	scaffold_11:501656-502208(-) (11)	NA	P31237	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr3g105840.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.94822.1.A1_at	A	A1TS	POPTR_0002s05600	POPTR_0002s05600 (11)	scaffold_2:3676046-3676361(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G59030.1	MATE efflux family protein 	LOC_Os12g42130.1	"MATE efflux family protein, putative, expressed"	Medtr5g097420.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.94827.1.A1_at	A	A1MS	POPTR_0006s10200	POPTR_0006s10200 (11)	scaffold_6:7559866-7560391(-) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235756_21.1	2OG-Fe(II) oxygenase AC235756.1 149509-155143 H EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.94831.1.A1_at	A	A1TS	POPTR_0013s06080	POPTR_0013s06080 (11)	scaffold_13:4491794-4491926(-) (11)	NA	Q9SRV2	Histone-lysine N-methyltransferase SUVR3	AT3G03750.2	SET domain protein 20 	LOC_Os01g56540.1	"histone-lysine N-methyltransferase SUVR3, putative, expressed"	Medtr8g147270.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.94833.1.A1_at	A	A1TS	POPTR_0004s14020	POPTR_0004s14020 (11)	scaffold_4:14490082-14490934(+) (11)	NA	Q8LGH4	Cullin-4	AT5G46210.1	cullin4 	LOC_Os03g57290.1	"cullin, putative, expressed"	Medtr2g024510.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.94841.1.A1_at	A	A1TS	POPTR_0002s24550	POPTR_0002s24550 (10)	scaffold_2:21903243-21903571(-) (10)	NA	Q6NLW5	Protein XRI1	AT5G48720.2	x-ray induced transcript 1 	LOC_Os01g68930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94845.1.A1_at	A	A1TS	POPTR_0011s16530	POPTR_0011s16530 (10)	scaffold_11:18400191-18400701(-) (10)	NA	Q6K5P9	Putative germin-like protein 2-2	AT3G05950.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr6g005250.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.94849.1.A1_at	A	A1TS	POPTR_0003s03220	POPTR_0003s03220 (11)	scaffold_3:3647024-3648804(+) (11)	NA	Q8RY73	"Protein Dom3z homolog, chloroplastic"	AT4G17620.1	glycine-rich protein 	LOC_Os05g32580.1	"glycine-rich protein, putative, expressed"	Medtr5g013740.1	RAI1 like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9486.1.S1_at	A	A1TS	POPTR_0013s02970	POPTR_0013s02970 (11)	scaffold_13:1798369-1798832(+) (11)	NA	NA	NA	AT5G27330.1	Prefoldin chaperone subunit family protein 	NA	NA	Medtr1g098770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94865.1.A1_at	A	A1TS	POPTR_0005s19020	POPTR_0005s19020 (11)	scaffold_5:17609934-17610692(+) (11)	NA	Q6NKN9	Transcription factor bHLH74	AT1G10120.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os06g16400.2	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g077090.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.9487.1.A1_at	A	A1TS	POPTR_0003s11210	POPTR_0003s11210 (10)	scaffold_3:12057381-12057840(+) (10)	NA	P29001	Acid beta-fructofuranosidase	AT1G12240.1	Glycosyl hydrolases family 32 protein 	LOC_Os04g45290.1	"glycosyl hydrolases, putative, expressed"	Medtr8g106250.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9488.1.S1_at	A	A1MS	POPTR_0010s22270	POPTR_0010s22270 (10)	scaffold_10:19232880-19233187(-) (10)	NA	O95684	FGFR1 oncogene partner	AT3G55005.1	tonneau 1b (TON1b) 	LOC_Os12g01170.1	"FGFR1 oncogene partner, putative, expressed"	Medtr1g146540.1	Lissencephaly type-1-like homology motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94885.1.S1_s_at	A	A1TS	POPTR_0017s08300	POPTR_0017s08300 (11)	scaffold_17:6760149-6762006(-) (11)	NA	Q9SFU3	Purple acid phosphatase 15	AT3G07130.1	purple acid phosphatase 15 	LOC_Os03g63074.2	"Ser/Thr protein phosphatase family protein, expressed"	Medtr3g105420.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.94889.1.A1_s_at	A	A1TS	POPTR_0003s11960	POPTR_0003s11960 (11)	scaffold_3:12666767-12666891(-) (11)	NA	O82743	Agamous-like MADS-box protein AGL19	AT4G22950.1	AGAMOUS-like 19 	LOC_Os10g39130.1	"OsMADS56 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.94909.1.A1_at	A	A1TS	POPTR_0002s15440	POPTR_0002s15440 (11)	scaffold_2:11550024-11550258(-) (11)	NA	NA	NA	AT1G01840.1	unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g083890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94916.1.A1_at	A	A1TS	POPTR_0006s24410	POPTR_0006s24410 (11)	scaffold_6:23027865-23030085(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT1G55110.1	indeterminate(ID)-domain 7 	LOC_Os01g09850.3	"ZOS1-04 - C2H2 zinc finger protein, expressed"	Medtr8g018830.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.94917.1.A1_at	A	A1MS	POPTR_0003s18720	POPTR_0003s18720 (11)	scaffold_3:17692135-17692441(+) (11)	NA	O24145	4-coumarate--CoA ligase 1	AT3G21240.1	4-coumarate:CoA ligase 2 	LOC_Os02g08100.1	"AMP-binding domain containing protein, expressed"	Medtr4g023340.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.94919.1.A1_at	A	A1TS	POPTR_0006s28860	POPTR_0006s28860 (9)	scaffold_6:26411078-26411662(+) (9)//scaffold_6:26429013-26429677(+) (11)	POPTR_0006s28820 (7)	Q8VYD6	Pentatricopeptide repeat-containing protein At5g10690	AT5G10690.1	pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein 	LOC_Os09g26190.1	"CBS domain containing protein, expressed"	Medtr1g010700.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94923.1.A1_at	A	A1TS	POPTR_0013s04380	POPTR_0013s04380 (9)	scaffold_13:3014294-3014768(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr1g047460.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94929.1.A1_at	A	A1TS	POPTR_0003s09260	POPTR_0003s09260 (11)	scaffold_3:10571553-10573331(+) (11)	NA	NA	NA	AT5G52980.1	"CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g13200.1	expressed protein	Medtr1g121560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94929.2.A1_a_at	A	A1TS	POPTR_0003s09260	POPTR_0003s09260 (11)	scaffold_3:10569844-10571555(+) (11)	NA	NA	NA	AT5G52980.1	"CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g13200.1	expressed protein	Medtr1g121560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94936.1.A1_at	A	A1TS	POPTR_0003s20940	POPTR_0003s20940 (11)	scaffold_3:19284550-19284963(-) (11)	NA	P73443	Lysyl-tRNA synthetase	AT3G13490.1	"Lysyl-tRNA synthetase, class II "	LOC_Os02g41470.3	"tRNA synthetases class II domain containing protein, expressed"	AC202489_36.1	"Aspartyl-tRNA synthetase, class IIb; RNA polymerase, omega subunit; nucleic acid binding, OB-fold, tRNA/helicase-type AC202489.10 148459-154660 E EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.9494.1.S1_a_at	A	A2TS	POPTR_0013s14980	POPTR_0013s14980 (11)//POPTR_0019s14440 (11)	scaffold_13:15044620-15044723(-) (11)//scaffold_19:15220747-15220850(+) (11)	NA	Q9CQI7	U2 small nuclear ribonucleoprotein B''	AT2G30260.1	U2 small nuclear ribonucleoprotein B 	LOC_Os03g18720.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g082430.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.9494.1.S1_at	A	A1TS	POPTR_0019s14440	POPTR_0019s14440 (10)	scaffold_19:15220226-15221064(+) (10)	NA	P08579	U2 small nuclear ribonucleoprotein B''	AT2G30260.1	U2 small nuclear ribonucleoprotein B 	LOC_Os03g18720.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g082430.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.9494.2.S1_at	A	A1TS	POPTR_0013s14980	POPTR_0013s14980 (11)	scaffold_13:15044361-15044806(-) (11)	NA	Q9CQI7	U2 small nuclear ribonucleoprotein B''	AT2G30260.1	U2 small nuclear ribonucleoprotein B 	LOC_Os03g18720.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g082430.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.94956.1.A1_at	A	A1TS	POPTR_0006s24190	POPTR_0006s24190 (11)	scaffold_6:22841472-22841764(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g019280.1	"Formin-like protein 5, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94964.1.A1_at	A	A1TS	POPTR_0001s11740	POPTR_0001s11740 (11)	scaffold_1:9105936-9108747(+) (11)	NA	Q8L6Y4	Polycomb group protein EMBRYONIC FLOWER 2	AT5G51230.1	VEFS-Box of polycomb protein 	LOC_Os09g13630.1	"ZOS9-03 - C2H2 zinc finger protein, expressed"	Medtr5g013280.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94967.1.A1_at	A	A1TS	POPTR_0006s27400	POPTR_0006s27400 (11)	scaffold_6:25302678-25303925(-) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.1	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94975.1.A1_at	A	A1TS	POPTR_0017s14440	POPTR_0017s14440 (9)	scaffold_17:14494134-14494419(+) (9)	NA	NA	NA	AT5G57685.1	glutamine dumper 3 	LOC_Os08g34700.1	"GDU1, putative, expressed"	Medtr3g138690.1	GDU1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9498.1.A1_at	A	A1TS	POPTR_0010s13380	POPTR_0010s13380 (11)	scaffold_10:13239844-13240425(+) (11)	NA	Q99685	Monoglyceride lipase	AT1G77420.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g49380.1	"lipase, putative, expressed"	Medtr5g067140.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9498.2.S1_at	A	A1TS	POPTR_0010s13380	POPTR_0010s13380 (9)	scaffold_10:13236262-13236776(+) (10)	NA	Q99685	Monoglyceride lipase	AT1G77420.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g49380.1	"lipase, putative, expressed"	Medtr5g067140.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94980.1.A1_a_at	A	A1TS	POPTR_0016s12920	POPTR_0016s12920 (11)	scaffold_16:12256874-12257366(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94985.1.A1_at	A	A1TS	POPTR_0013s11130	POPTR_0013s11130 (11)	scaffold_13:11824524-11825012(-) (11)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65110.1	"POT family protein, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.95000.1.A1_at	A	A1TA	POPTR_0007s01650	POPTR_0007s01650 (11)	scaffold_7:949337-949692(-) (11)	POPTR_0017s05450 (6)	Q9SZF7	Protein SHORT-ROOT	AT4G37650.1	GRAS family transcription factor 	LOC_Os07g39820.1	"SHR, putative, expressed"	Medtr5g015580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95016.1.A1_s_at	A	A1TS	POPTR_0008s02160	POPTR_0008s02160 (11)	scaffold_8:1038788-1038865(+) (11)	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT5G04740.1	ACT domain-containing protein 	LOC_Os12g05650.1	"ACT domain containing protein, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95018.1.A1_s_at	A	A1TS	POPTR_0015s04450	POPTR_0015s04450 (11)	scaffold_15:4592348-4592852(-) (11)	NA	P40393	Ras-related protein RIC2	AT1G73640.1	RAB GTPase homolog A6A 	LOC_Os01g54590.1	"ras-related protein, putative, expressed"	Medtr3g092520.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.95030.1.A1_at	A	A1TS	POPTR_0013s04240	POPTR_0013s04240 (11)	scaffold_13:2827594-2828071(+) (11)	NA	Q8LDC8	Ethylene-responsive transcription factor 1B	AT3G23240.1	ethylene response factor 1 	LOC_Os03g64260.1	"AP2 domain containing protein, expressed"	Medtr1g042600.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.95031.1.A1_at	A	A1TS	POPTR_0003s21400	POPTR_0003s21400 (10)	scaffold_3:19578615-19578979(+) (10)	NA	Q9NUD9	GPI mannosyltransferase 2	AT1G11880.1	"transferases, transferring hexosyl groups "	LOC_Os12g31480.1	"GPI mannosyltransferase 2, putative, expressed"	Medtr4g114500.1	Protein of unknown function DUF409 	GO:0006506|GPI anchor biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.95066.1.A1_s_at	A	A1TS	POPTR_0014s13020	POPTR_0014s13020 (11)	scaffold_14:9587831-9588445(+) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.95076.1.A1_at	A	A1TS	POPTR_0008s10780	POPTR_0008s10780 (11)	scaffold_8:6780965-6781486(+) (11)	NA	NA	NA	AT5G49350.2	Glycine-rich protein family 	LOC_Os01g14990.1	"GCRP6 - Glycine and cysteine rich family protein precursor, putative, expressed"	Medtr2g038870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95085.1.A1_at	A	A1TS	POPTR_0006s13010	POPTR_0006s13010 (11)	scaffold_6:10245007-10245212(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95085.1.A1_s_at	A	A1TS	POPTR_0006s13010	POPTR_0006s13010 (11)	scaffold_6:10245163-10245410(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95086.1.A1_at	A	A1TS	POPTR_0002s08760	POPTR_0002s08760 (11)	scaffold_2:6152304-6152728(+) (11)	NA	P50699	Thaumatin-like protein	AT1G77700.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os04g59370.1	"thaumatin, putative, expressed"	Medtr5g065310.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9509.1.A1_s_at	A	A1TS	POPTR_0004s17910	POPTR_0004s17910 (11)	scaffold_4:17948009-17948496(-) (11)	NA	NA	NA	AT4G34950.1	Major facilitator superfamily protein 	LOC_Os09g36600.1	"nodulin, putative, expressed"	Medtr5g022310.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95100.1.A1_at	A	A1TS	POPTR_0017s04720	POPTR_0017s04720 (9)	scaffold_17:3619035-3620386(-) (9)	NA	Q6LA43	Two-component response regulator-like APRR2	AT2G20570.1	GBF's pro-rich region-interacting factor 1 	LOC_Os06g24070.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr4g108850.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95107.1.A1_s_at	A	A1TS	POPTR_0001s16330	POPTR_0001s16330 (11)	scaffold_1:13133438-13133974(+) (11)	NA	NA	NA	AT3G14280.1	unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g026570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95110.1.A1_at	A	A1TS	POPTR_0001s12430	POPTR_0001s12430 (11)	scaffold_1:9647267-9647524(+) (11)	NA	Q54XM9	Transcription initiation factor TFIID subunit 11	AT4G20280.1	TBP-associated factor 11 	LOC_Os01g48810.1	"transcription initiation factor TFIID subunit 11, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005634|nucleus
PtpAffx.95112.1.A1_at	A	A1TS	POPTR_0005s10940	POPTR_0005s10940 (11)	scaffold_5:7864854-7865915(-) (11)	NA	P18616	DNA-directed RNA polymerase II subunit RPB1	AT4G35800.1	RNA polymerase II large subunit 	LOC_Os05g05860.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g023000.1	"Protein kinase; RNA polymerase Rpb1, domain 6 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006366|transcription from RNA polymerase II promoter	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	"GO:0005665|""DNA-directed RNA polymerase II, core complex"""
PtpAffx.95120.1.A1_at	A	A1MS	POPTR_0009s12200	POPTR_0009s12200 (9)	scaffold_9:9983488-9983701(-) (9)	NA	P51820	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006545|glycine biosynthetic process||GO:0006231|dTMP biosynthetic process	GO:0004799|thymidylate synthase activity||GO:0004146|dihydrofolate reductase activity	NA
PtpAffx.95126.1.A1_at	A	A1TS	POPTR_0017s04850	POPTR_0017s04850 (11)	scaffold_17:3740927-3741450(+) (11)	NA	NA	NA	AT5G44150.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g48940.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95130.1.A1_s_at	A	A1TS	POPTR_0006s19310	POPTR_0006s19310 (11)	scaffold_6:18337188-18337577(+) (11)	NA	Q9ZP41	EG45-like domain containing protein	AT2G18660.1	plant natriuretic peptide A 	LOC_Os09g29690.1	"beta-expansin precursor, putative, expressed"	Medtr6g084060.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95131.1.A1_at	A	A1MS	POPTR_0008s15410	POPTR_0008s15410 (9)	scaffold_8:10260054-10260587(+) (9)	NA	O23337	Pentatricopeptide repeat-containing protein At4g14820	AT4G14820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g48660.1	"DEFL21 - Defensin and Defensin-like DEFL family, expressed"	Medtr5g006540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95134.1.A1_at	A	A1TS	POPTR_0011s16680	POPTR_0011s16680 (11)	scaffold_11:18473090-18473126(+) (11)	NA	NA	NA	AT1G56200.2	embryo defective 1303 	NA	NA	Medtr3g079930.1	"EMB1303, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95137.1.A1_at	A	A1MA	POPTR_0007s11030	POPTR_0007s11030 (11)	scaffold_7:11298799-11298955(-) (11)	NA	P22335	Heat shock factor protein HSF24	AT4G36990.1	heat shock factor 4 	LOC_Os09g35790.2	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g017450.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.95143.1.A1_at	A	A1TS	POPTR_0001s03950	POPTR_0001s03950 (11)	scaffold_1:3142248-3142425(-) (11)	NA	O65351	Subtilisin-like protease	AT4G26330.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os03g06290.1	"OsSub27 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.95148.1.S1_s_at	A	A2TS	POPTR_0004s16490	POPTR_0004s16490 (11)//POPTR_0009s12210 (10)	scaffold_4:16943450-16944553(-) (11)//scaffold_9:9994532-9995702(-) (10)	NA	Q94A94	"Diaminopimelate decarboxylase 2, chloroplastic"	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein 	LOC_Os02g24354.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr5g022600.1	Diaminopimelate decarboxylase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.95150.1.A1_at	A	A1MS	POPTR_0018s02030	POPTR_0018s02030 (9)	scaffold_18:1820667-1822365(-) (9)	NA	Q96GN5	Cell division cycle-associated 7-like protein	AT1G67780.1	Zinc-finger domain of monoamine-oxidase A repressor R1 protein 	LOC_Os05g23530.4	expressed protein	Medtr4g128660.1	protein binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95157.1.A1_at	A	A1MS	POPTR_0001s01640	POPTR_0001s01640 (11)	scaffold_1:1220482-1220865(-) (11)	NA	Q9C6X2	Secretory carrier-associated membrane protein 4	AT1G32050.1	SCAMP family protein 	LOC_Os04g50890.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr5g027960.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
PtpAffx.95167.1.A1_at	A	A1TS	POPTR_0005s08750	POPTR_0005s08750 (11)	scaffold_5:6101368-6101602(+) (11)	NA	Q9SJ12	"Probable ATP synthase 24 kDa subunit, mitochondrial"	AT2G21870.1	copper ion binding;cobalt ion binding;zinc ion binding 	LOC_Os02g03860.1	"mitochondrial ATP synthase precursor, putative, expressed"	Medtr4g141050.1	"Probable ATP synthase 24 kDa subunit, mitochondrial precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95176.1.A1_at	A	A1TS	POPTR_0005s22320	POPTR_0005s22320 (11)	scaffold_5:21279187-21279347(-) (11)	NA	NA	NA	AT1G06530.1	Tropomyosin-related 	NA	NA	Medtr5g099020.1	myosin heavy chain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95178.1.A1_at	A	A1TS	POPTR_0010s10890	POPTR_0010s10890 (11)	scaffold_10:11278093-11278581(-) (11)	NA	Q9FX35	"Pentatricopeptide repeat-containing protein At1g73400, mitochondrial"	AT1G73400.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g52220.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g137270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95184.1.A1_a_at	A	A1TS	POPTR_0002s10090	POPTR_0002s10090 (11)	scaffold_2:7251654-7251869(-) (11)	NA	Q9BXR0	Queuine tRNA-ribosyltransferase	NA	NA	LOC_Os09g29420.1	"queuine tRNA-ribosyltransferase, putative, expressed"	Medtr5g107040.1	Queuine/other tRNA-ribosyltransferase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044260|cellular macromolecule metabolic process||GO:0008616|queuosine biosynthetic process	GO:0008479|queuine tRNA-ribosyltransferase activity	NA
PtpAffx.95185.1.A1_at	A	A1TS	POPTR_0010s08750	POPTR_0010s08750 (11)	scaffold_10:9608139-9608665(+) (11)	NA	P31674	40S ribosomal protein S15	AT5G09510.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.95191.1.A1_at	A	A1TS	POPTR_0010s09160	POPTR_0010s09160 (11)	scaffold_10:10025853-10026353(-) (11)	NA	Q8AVI4	Leucine-rich repeat protein SHOC-2	AT1G04210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g53250.1	expressed protein	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.95193.1.A1_at	A	A1MS	POPTR_0008s15840	POPTR_0008s15840 (11)	scaffold_8:10546768-10546991(+) (11)	NA	Q7RZD3	Serine/threonine-protein kinase ste-20	AT1G04210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g53250.1	expressed protein	Medtr2g017390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.95193.1.A1_s_at	A	A1TS	POPTR_0008s15840	POPTR_0008s15840 (11)	scaffold_8:10546479-10546778(+) (11)	NA	Q7RZD3	Serine/threonine-protein kinase ste-20	AT1G04210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g53250.1	expressed protein	Medtr2g017390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.95204.1.A1_at	A	A1TS	POPTR_0008s17270	POPTR_0008s17270 (11)	scaffold_8:11600513-11600895(-) (11)	POPTR_0010s07510 (7)	Q9DC48	Pre-mRNA-processing factor 17	AT1G10580.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g27970.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086930.1	"Pre-mRNA-processing factor 17, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95211.1.A1_a_at	A	A1TS	POPTR_0015s00890	POPTR_0015s00890 (11)	scaffold_15:512486-512662(-) (11)	NA	NA	NA	AT5G53650.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g40650.1	expressed protein	Medtr3g123140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95211.2.A1_at	A	A1TS	POPTR_0015s00890	POPTR_0015s00890 (11)	scaffold_15:512250-512480(-) (11)	NA	NA	NA	AT5G53650.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g40650.1	expressed protein	Medtr3g123140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95211.3.A1_at	A	A1MS	POPTR_0015s00890	POPTR_0015s00890 (10)	scaffold_15:512649-512771(-) (10)	NA	NA	NA	AT5G53650.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g40650.1	expressed protein	Medtr3g123140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95224.1.A1_at	A	A2TS	POPTR_0008s13850	POPTR_0008s13870 (11)//POPTR_0008s13850 (11)	scaffold_8:9125559-9126392(-) (11)//scaffold_8:9135597-9136430(-) (11)	NA	Q8H129	Purple acid phosphatase 3	AT1G14700.1	purple acid phosphatase 3 	LOC_Os03g13540.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	AC146550_6.1	Metallophosphoesterase AC146550.40 20664-27087 F EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.95228.1.A1_at	A	A1MS	POPTR_0001s17170	POPTR_0001s17170 (9)	scaffold_1:14016458-14016884(+) (9)	NA	Q9FUZ0	"Peptide deformylase 1A, chloroplastic"	AT1G15390.1	peptide deformylase 1A 	LOC_Os01g37510.1	"peptide deformylase, putative, expressed"	Medtr2g126050.1	Formylmethionine deformylase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
PtpAffx.95237.1.A1_at	A	A1TS	POPTR_0013s05370	POPTR_0013s05370 (9)	scaffold_13:3840536-3840969(+) (9)	NA	Q93YX4	5'-adenylylsulfate reductase-like 5	AT3G03860.1	APR-like 5 	LOC_Os03g59170.1	"OsAPRL5  adenosine 5'-phosphosulfate reductase-like OsAPRL5, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95239.1.A1_at	A	A1TS	POPTR_0001s26360	POPTR_0001s26360 (11)	scaffold_1:25404365-25405553(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.95244.1.A1_at	A	A1TS	POPTR_0006s09540	POPTR_0006s09540 (11)	scaffold_6:7016306-7017540(-) (11)	NA	NA	NA	AT3G54040.1	PAR1 protein 	NA	NA	Medtr4g015430.1	PAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95248.1.A1_at	A	A1TS	POPTR_0010s23670	POPTR_0010s23670 (11)	scaffold_10:20180716-20181089(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117180.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.9525.1.S1_at	A	A1TS	POPTR_0001s30930	POPTR_0001s30930 (11)	scaffold_1:29357603-29358205(-) (11)	NA	NA	NA	AT4G34150.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os06g43190.1	"retrotransposon protein, putative, unclassified, expressed"	AC151525_7.1	C2 AC151525.18 31176-29302 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95256.1.A1_at	A	A1MS	POPTR_0005s17760	POPTR_0005s17760 (11)	scaffold_5:15491647-15491907(-) (11)	NA	NA	NA	AT5G49710.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g54080.2	expressed protein	Medtr5g074990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95267.1.A1_at	A	A1TS	POPTR_0015s09400	POPTR_0015s09400 (11)	scaffold_15:10619165-10620201(-) (11)	NA	Q9FML2	Histone deacetylase 6	AT5G63110.1	histone deacetylase 6 	LOC_Os08g25570.1	"histone deacetylase, putative, expressed"	Medtr3g114600.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95277.1.A1_s_at	A	A1TS	POPTR_0002s23090	POPTR_0002s23090 (11)	scaffold_2:20513733-20514164(+) (11)	NA	NA	NA	AT3G21710.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g34020.1	expressed protein	Medtr2g103820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95295.1.A1_at	A	A1MS	POPTR_0004s10000	POPTR_0004s10000 (11)	scaffold_4:8532466-8532823(+) (11)	NA	Q84L31	Putative DNA repair protein RAD23-3	AT3G02540.3	Rad23 UV excision repair protein family 	LOC_Os09g24200.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.95297.1.S1_s_at	A	A1TS	POPTR_0003s08390	POPTR_0003s08390 (11)	scaffold_3:9793636-9794081(-) (11)	NA	NA	NA	AT1G32740.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os02g46220.1	expressed protein	Medtr5g013870.1	"F6N18.12, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.953.2.A1_a_at	A	A2TS	POPTR_0012s12140	POPTR_0012s12160 (11)//POPTR_0012s12140 (11)	scaffold_12:12419112-12419367(+) (11)//scaffold_12:12431000-12431254(+) (11)//scaffold_12:14875848-14876102(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.953.2.A1_at	A	A2MS	POPTR_0012s12140	POPTR_0012s12160 (11)//POPTR_0012s12140 (11)	scaffold_12:12396932-12397176(+) (9)//scaffold_12:12413170-12419397(+) (11)//scaffold_12:12419151-12431284(+) (11)//scaffold_12:14873252-14876069(-) (11)//scaffold_12:14891596-14897952(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95314.1.A1_at	A	A1TA	POPTR_0008s09850	POPTR_0008s09850 (11)	scaffold_8:6122682-6122925(-) (11)	NA	Q42602	Cytochrome P450 89A2	AT1G64940.1	"cytochrome P450, family 87, subfamily A, polypeptide 6 "	LOC_Os10g37110.1	"transposon protein, putative, unclassified, expressed"	Medtr2g010280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.95320.1.A1_at	A	A1TS	POPTR_0016s12620	POPTR_0016s12620 (10)	scaffold_16:12006881-12013624(-) (10)	NA	O42899	Protein sco1	AT3G08950.1	electron transport SCO1/SenC family protein 	LOC_Os02g06480.2	"SCO1 protein homolog, mitochondrial precursor, putative, expressed"	NA	NA	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.95327.1.A1_at	A	A1TS	POPTR_0013s03040	POPTR_0013s03040 (11)	scaffold_13:1846881-1847410(-) (11)	NA	Q80Y75	DnaJ homolog subfamily B member 13	AT5G27240.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os06g34440.1	"dnaJ domain containing protein, expressed"	Medtr7g139960.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.9534.1.S1_at	A	A1MS	POPTR_0011s02920	POPTR_0011s02920 (10)	scaffold_11:2864559-2864928(-) (10)	NA	Q9FT92	Uncharacterized protein At5g08430	AT5G63700.1	zinc ion binding;DNA binding 	LOC_Os01g66140.1	"plus-3 domain containing protein, putative, expressed"	Medtr3g086490.1	"SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.95347.2.A1_a_at	A	A1TS	POPTR_0005s15840	POPTR_0005s15840 (11)	scaffold_5:12465526-12466141(+) (11)	NA	Q6NRL0	PrdX-deacylase domain-containing protein 1	AT1G44835.2	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g52880.2	"ybaK/prolyl-tRNA synthetase family protein, putative, expressed"	Medtr3g097700.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95355.1.A1_at	A	A1TS	POPTR_0016s00390	POPTR_0016s00390 (11)	scaffold_16:101268-101899(-) (11)	NA	Q7ZXT3	Enhancer of mRNA-decapping protein 4	AT3G13300.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g033290.1	"Peptidase S26A, signal peptidase I; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95367.1.A1_at	A	A1TS	POPTR_0009s06760	POPTR_0009s06760 (11)	scaffold_9:6477118-6477483(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95368.1.A1_s_at	A	A1TS	POPTR_0001s17730	POPTR_0001s17730 (11)	scaffold_1:14585293-14587374(+) (11)	NA	Q9C968	Cyclin-A2-4	AT1G80370.1	Cyclin A2;4 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr2g123440.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.9537.1.S1_at	A	A1TA	POPTR_0013s03670	POPTR_0013s03670 (10)	scaffold_13:2341829-2342211(+) (10)	NA	Q39117	Trihelix transcription factor GT-2	AT5G28300.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g096240.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95377.1.A1_at	A	A1TS	POPTR_0006s18330	POPTR_0006s18330 (11)	scaffold_6:16698933-16699445(+) (11)	NA	Q6PQQ3	AP2-like ethylene-responsive transcription factor AIL5	AT5G57390.1	AINTEGUMENTA-like 5 	LOC_Os04g55970.2	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g129150.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.95382.1.A1_s_at	A	A1TS	POPTR_0491s00200	POPTR_0491s00200 (11)	scaffold_491:9467-9825(-) (11)	NA	NA	NA	AT3G59680.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g41860.1	expressed protein	Medtr4g128470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9539.1.A1_at	A	A1TS	POPTR_0009s15730	POPTR_0009s15730 (11)	scaffold_9:12100098-12100733(-) (11)	NA	Q39238	Serine/threonine-protein kinase TOUSLED	AT5G20930.1	Protein kinase superfamily protein 	LOC_Os03g53880.1	"serine/threonine-protein kinase TOUSLED, putative, expressed"	Medtr5g094260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.954.1.A1_at	A	A1TS	POPTR_0002s16120	POPTR_0002s16120 (11)	scaffold_2:12011259-12011713(-) (11)	NA	NA	NA	AT4G00450.1	RNA polymerase II transcription mediators 	LOC_Os07g45400.1	expressed protein	Medtr7g087340.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95403.1.A1_at	A	A1TS	POPTR_0008s01400	POPTR_0008s01400 (11)	scaffold_8:677694-678148(+) (11)	NA	P83326	Pectinesterase inhibitor	AT5G64620.1	cell wall / vacuolar inhibitor of fructosidase 2 	NA	NA	Medtr2g037780.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.95409.1.S1_s_at	A	A1TS	POPTR_0002s06580	POPTR_0002s06580 (11)	scaffold_2:4382366-4382791(-) (11)	NA	NA	NA	AT4G09890.1	Protein of unknown function (DUF3511) 	LOC_Os06g47220.1	expressed protein	Medtr1g124780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9541.1.S1_at	A	A1TS	POPTR_0010s17280	POPTR_0010s17280 (11)	scaffold_10:15931147-15931192(+) (11)	NA	NA	NA	AT1G26750.1	unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g10650.1	expressed protein	Medtr2g104660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9541.1.S1_s_at	A	A1TS	POPTR_0010s17280	POPTR_0010s17280 (11)	scaffold_10:15930899-15931161(+) (11)	NA	NA	NA	AT1G26750.1	unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g10650.1	expressed protein	Medtr2g104660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9544.1.A1_a_at	A	A1TS	POPTR_0018s03500	POPTR_0018s03500 (11)	scaffold_18:3062581-3063574(+) (11)	NA	Q3SZ85	Uncharacterized protein C2orf79 homolog	AT5G10700.1	Peptidyl-tRNA hydrolase II (PTH2) family protein 	LOC_Os04g51570.1	"tyrosine phosphatase, putative, expressed"	Medtr3g133260.1	Low molecular weight phosphotyrosine protein phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95443.1.A1_s_at	A	A1TS	POPTR_0003s21240	POPTR_0003s21240 (11)	scaffold_3:19485795-19486927(+) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT3G13570.1	SC35-like splicing factor 30A 	LOC_Os07g43950.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.95448.1.A1_at	A	A1TS	POPTR_0010s08480	POPTR_0010s08480 (11)	scaffold_10:9385810-9386847(+) (11)	NA	NA	NA	AT3G23160.1	Protein of unknown function (DUF668) 	LOC_Os04g08764.1	"avr9/Cf-9 rapidly elicited protein 137, putative, expressed"	Medtr7g034900.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95453.1.A1_at	A	A1TS	POPTR_0006s08400	POPTR_0006s08400 (9)	scaffold_6:6116549-6116961(+) (9)	NA	NA	NA	AT2G37530.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g118290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95460.1.A1_at	A	A1TS	POPTR_0005s12970	POPTR_0005s12970 (11)	scaffold_5:9808159-9808502(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95461.1.A1_at	A	A1TS	POPTR_0005s04470	POPTR_0005s04470 (11)	scaffold_5:2992382-2992810(-) (11)	NA	Q28I38	DnaJ homolog subfamily B member 14	AT5G27240.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g27740.3	"dnaJ domain containing protein, expressed"	Medtr7g139960.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.95473.1.A1_at	A	A1MS	POPTR_0002s08150	POPTR_0002s08150 (11)	scaffold_2:5645762-5645981(+) (11)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g66120.1	"No apical meristem protein, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.9548.1.S1_at	A	A1TS	POPTR_0001s00240	POPTR_0001s00240 (11)	scaffold_1:107471-107948(+) (11)	NA	O22152	Axial regulator YABBY 1	AT2G45190.1	Plant-specific transcription factor YABBY family protein 	LOC_Os04g45330.1	"YABBY domain containing protein, putative, expressed"	Medtr8g106280.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95485.1.A1_at	A	A1TS	POPTR_0006s19540	POPTR_0006s19540 (11)	scaffold_6:18595095-18595142(+) (11)	NA	P46287	60S ribosomal protein L11	AT5G45775.2	Ribosomal L5P family protein 	LOC_Os02g14059.1	"ribosomal protein L5, putative, expressed"	Medtr8g050250.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.95485.1.A1_s_at	A	A1TS	POPTR_0006s19540	POPTR_0006s19540 (11)	scaffold_6:18594813-18595311(+) (11)	POPTR_0006s19530 (6)	P46287	60S ribosomal protein L11	AT5G45775.2	Ribosomal L5P family protein 	LOC_Os02g14059.1	"ribosomal protein L5, putative, expressed"	Medtr8g050250.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.9549.1.S1_at	A	A1MS	POPTR_0001s35010	POPTR_0001s35010 (9)	scaffold_1:33289301-33289960(-) (9)	NA	NA	NA	AT5G14550.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os05g07790.1	"DNA binding protein, putative, expressed"	Medtr4g143290.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.95492.1.A1_at	A	A1MS	POPTR_0019s02450	POPTR_0019s02450 (10)	scaffold_19:2244796-2245237(+) (10)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os12g40530.1	"transposon protein, putative, unclassified, expressed"	Medtr1g094000.1	"Plant MuDR transposase; Zinc finger, PMZ-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.95493.1.A1_s_at	A	A1TS	POPTR_0005s27510	POPTR_0005s27510 (10)	scaffold_5:25136753-25137050(-) (10)	NA	P93006	Probable protein phosphatase 2C 27	AT2G33700.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr3g160100.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95495.2.A1_at	A	A1TS	POPTR_0011s15570	POPTR_0011s15570 (11)	scaffold_11:17646172-17646903(-) (11)	NA	Q9ZSB5	Ubiquitin carboxyl-terminal hydrolase 10	AT4G10570.1	ubiquitin-specific protease 9 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.95502.1.A1_at	A	A1MS	POPTR_0001s34080	POPTR_0001s34080 (10)	scaffold_1:32216372-32216873(-) (10)	NA	NA	NA	AT3G01810.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). 	LOC_Os12g13340.1	expressed protein	Medtr6g025280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95504.1.A1_at	A	A1TA	POPTR_0004s04700	POPTR_0004s04700 (11)	scaffold_4:3445438-3445808(-) (11)	NA	Q94ID6	Ethylene-responsive transcription factor 12	AT1G28360.1	ERF domain protein 12 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr2g017810.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.95507.1.A1_at	A	A1MS	POPTR_0010s17930	POPTR_0010s17930 (11)	scaffold_10:16354457-16354801(+) (11)	NA	Q39769	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G16300.1	glyceraldehyde-3-phosphate dehydrogenase of plastid 2 	LOC_Os02g07490.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr2g077990.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.95515.1.S1_at	A	A1TS	POPTR_0009s04840	POPTR_0009s04840 (11)	scaffold_9:5072298-5074237(-) (11)	NA	O82390	"Sodium-dependent phosphate transport protein 1, chloroplastic"	AT2G29650.1	phosphate transporter 4;1 	LOC_Os01g17240.1	"transporter, major facilitator family, putative, expressed"	AC233571_3.1	Major facilitator superfamily MFS_1 AC233571.2 15766-21806 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95526.1.A1_at	A	A1TS	POPTR_0001s21460	POPTR_0001s21460 (11)	scaffold_1:19943318-19943840(+) (11)	NA	P49310	Glycine-rich RNA-binding protein GRP1A	AT3G26420.1	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 	LOC_Os03g61990.5	"glycine-rich RNA-binding protein 7, putative, expressed"	Medtr2g008300.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.95535.1.A1_at	A	A1TS	POPTR_0009s05600	POPTR_0009s05600 (11)	scaffold_9:5669239-5669381(-) (11)	NA	Q91X20	Set1/Ash2 histone methyltransferase complex subunit ASH2	AT1G51450.1	TRAUCO 	LOC_Os12g04930.1	"ASH-like SPRY domain containing protein, putative, expressed"	Medtr4g104590.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95541.1.S1_at	A	A1TS	POPTR_0013s02620	POPTR_0013s02620 (9)	scaffold_13:1551244-1551800(-) (11)	NA	Q6B4J5	Spore coat assembly protein exsA	AT5G19090.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.95543.1.A1_at	A	A1TS	POPTR_0007s03190	POPTR_0007s03190 (11)	scaffold_7:1836575-1837127(-) (11)	NA	Q964D8	Beta-ureidopropionase	AT5G64370.1	beta-ureidopropionase 	LOC_Os07g30170.1	"nitrilase, putative, expressed"	Medtr4g121170.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.95544.2.A1_a_at	A	A1TS	POPTR_0777s00210	POPTR_0777s00210 (11)	scaffold_16:393595-393827(-) (10)//scaffold_777:7326-7557(-) (11)	NA	A2RRV9	Cytosolic Fe-S cluster assembly factor narfl	AT4G16440.1	ferredoxin hydrogenases 	LOC_Os03g53750.1	"nuclear prelamin A recognition factor, putative, expressed"	Medtr3g162950.1	Iron hydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95549.1.A1_at	A	A1TS	POPTR_0013s14330	POPTR_0013s14330 (10)	scaffold_13:14562588-14563155(+) (10)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G28220.1	NAD(P)H dehydrogenase B1 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.95551.1.A1_at	A	A1TS	POPTR_0005s27380	POPTR_0005s27380 (11)	scaffold_5:25082967-25083500(-) (11)	NA	NA	NA	AT4G02210.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). 	LOC_Os03g53590.2	expressed protein	Medtr7g047430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95553.1.A1_at	A	A1MS	POPTR_0014s16780	POPTR_0014s16780 (11)	scaffold_14:12849924-12850377(+) (11)	NA	NA	NA	AT3G07660.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os09g08670.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g077880.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95554.1.A1_at	A	A1TS	POPTR_0019s09260	POPTR_0019s09260 (11)	scaffold_19:10836042-10836236(+) (11)	NA	Q05047	Secologanin synthase	AT5G24910.1	"cytochrome P450, family 714, subfamily A, polypeptide 1 "	LOC_Os12g02640.1	"cytochrome P450 72A1, putative, expressed"	Medtr3g121810.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.95563.1.A1_at	A	A1MS	POPTR_0002s18200	POPTR_0002s18200 (11)	scaffold_2:14135120-14135495(-) (11)	NA	Q3ZDQ4	Serine/threonine-protein kinase atg1	AT3G61960.1	Protein kinase superfamily protein 	LOC_Os03g02980.2	"CAMK_CAMK_like_ULKh_APGy.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g144060.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95571.1.A1_at	A	A1TS	POPTR_0015s03480	POPTR_0015s03480 (11)	scaffold_15:3039728-3040084(+) (11)	NA	Q9ZPQ3	D-aminoacyl-tRNA deacylase	AT2G03800.1	D-aminoacyl-tRNA deacylases 	LOC_Os08g25140.1	"ethanol tolerance protein GEKO1, putative, expressed"	Medtr8g077420.1	Protein of unknown function DUF516 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95576.1.A1_at	A	A1TS	POPTR_0014s03880	POPTR_0014s03880 (11)	scaffold_14:3099329-3099879(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95576.2.A1_at	A	A2TS	POPTR_2111s00200	POPTR_2111s00200 (11)//POPTR_0014s03880 (10)	scaffold_14:3099287-3099469(-) (10)//scaffold_2111:3569-3755(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95587.1.A1_at	A	A1TS	POPTR_0005s06680	POPTR_0005s06680 (11)	scaffold_5:4485331-4485903(+) (11)	NA	Q9SS90	E3 ubiquitin-protein ligase RGLG1	AT5G63970.2	Copine (Calcium-dependent phospholipid-binding protein) family 	LOC_Os01g73000.2	"copine, putative, expressed"	Medtr3g143100.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95597.1.A1_s_at	A	A1TS	POPTR_0019s08010	POPTR_0019s08010 (11)	scaffold_19:9338405-9340402(+) (11)	NA	NA	NA	AT4G18530.1	Protein of unknown function (DUF707) 	LOC_Os01g69050.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g005170.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95597.2.A1_at	A	A1TS	POPTR_0019s08010	POPTR_0019s08010 (11)	scaffold_19:9340680-9340751(+) (11)	NA	NA	NA	AT4G18530.1	Protein of unknown function (DUF707) 	LOC_Os01g69050.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g005170.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95599.1.A1_at	A	A1TS	POPTR_0008s02470	POPTR_0008s02470 (11)	scaffold_8:1207976-1208851(+) (11)	NA	NA	NA	AT5G04670.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os02g01020.1	expressed protein	Medtr1g117100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95618.1.A1_at	A	A1TS	POPTR_0007s06160	POPTR_0007s06160 (11)	scaffold_7:4301083-4301559(-) (11)	NA	NA	NA	AT2G22120.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os11g39130.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g100910.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95654.1.A1_at	A	A1TS	POPTR_0008s03930	POPTR_0008s03930 (9)	scaffold_8:2163913-2164295(-) (9)	NA	Q7Z2K6	Endoplasmic reticulum metallopeptidase 1	AT5G20660.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os04g43916.2	expressed protein	Medtr1g120840.1	ArgE/dapE/ACY1/CPG2/yscS; Peptidase M28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.95683.1.A1_at	A	A1TS	POPTR_0001s40540	POPTR_0001s40540 (11)	scaffold_1:40000111-40000625(-) (11)	NA	Q9FN29	Homeobox-leucine zipper protein ATHB-52	AT5G53980.1	homeobox protein 52 	LOC_Os08g32085.1	expressed protein	Medtr8g113090.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.95686.1.A1_at	A	A1TS	POPTR_0007s01700	POPTR_0007s01700 (11)	scaffold_7:990127-990491(+) (11)	NA	O24495	"Hydroxyacylglutathione hydrolase 1, mitochondrial"	AT2G43430.1	glyoxalase 2-1 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95687.1.A1_at	A	A1TS	POPTR_0001s20780	POPTR_0001s20780 (11)	scaffold_1:18953404-18953980(+) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os07g32412.2	"transposon protein, putative, unclassified, expressed"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95698.1.A1_s_at	A	A1TS	POPTR_0002s03890	POPTR_0002s03890 (11)	scaffold_2:2440846-2441231(-) (11)	NA	Q8L4E7	SAP-like protein BP-73	AT1G06190.1	Rho termination factor 	LOC_Os03g08480.2	"rho termination factor, N-terminal domain containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006353|transcription termination	GO:0003715|transcription termination factor activity	NA
PtpAffx.9570.1.S1_at	A	A1TS	POPTR_0010s15820	POPTR_0010s15820 (11)	scaffold_10:14934718-14935062(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g037750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95703.1.A1_at	A	A1TS	POPTR_0004s16840	POPTR_0004s16840 (11)	scaffold_4:17197069-17197771(-) (11)	NA	NA	NA	AT4G34660.1	SH3 domain-containing protein 	LOC_Os10g36870.1	"src homology-3 domain protein 3, putative, expressed"	Medtr3g162940.1	SH3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95712.1.A1_at	A	A2TS	POPTR_0002s14070	POPTR_0002s14070 (11)//POPTR_0495s00200 (11)	scaffold_2:10419527-10419849(-) (11)//scaffold_495:10842-11164(+) (11)	NA	Q3E6Y3	Uncharacterized protein At1g28695	AT1G28710.3	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os08g41800.1	"regulatory protein, putative, expressed"	Medtr1g064780.1	"Uncharacterized protein At4g15970, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9572.1.A1_at	A	A1TS	POPTR_0010s00290	POPTR_0010s00290 (11)	scaffold_10:95449-95929(+) (11)	NA	NA	NA	AT5G49220.1	Protein of unknown function (DUF789) 	LOC_Os07g14310.1	expressed protein	Medtr8g096450.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95732.1.A1_a_at	A	A1TS	POPTR_0014s08260	POPTR_0014s08260 (11)	scaffold_14:6141299-6142334(-) (11)//scaffold_14:6141349-6142372(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95732.1.A1_at	A	A1TS	POPTR_0014s08260	POPTR_0014s08260 (11)	scaffold_14:6141124-6142446(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95739.1.A1_s_at	A	A1TS	POPTR_0011s03440	POPTR_0011s03440 (11)	scaffold_11:3545263-3546441(+) (11)	NA	Q84LB2	"(E,E)-alpha-farnesene synthase"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr7g010000.1	Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.95744.1.A1_at	A	A1TS	POPTR_0009s03210	POPTR_0009s03210 (11)	scaffold_9:3899205-3900271(+) (11)	NA	Q9AT35	60S ribosomal protein L23a	AT3G55280.2	ribosomal protein L23AB 	LOC_Os01g24690.1	"60S ribosomal protein L23A, putative, expressed"	Medtr4g079040.1	"Ribosomal protein L23, N-terminal; Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.95752.1.A1_at	A	A1TS	POPTR_0002s24420	POPTR_0002s24420 (11)	scaffold_2:21796273-21796932(+) (11)	NA	C0LGV0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	AT5G48740.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	AC146793_13.1	Leucine-rich repeat AC146793.7 75617-72033 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.95760.1.A1_a_at	A	A1TS	POPTR_0001s24120	POPTR_0001s24120 (11)	scaffold_1:23494332-23494709(-) (11)	NA	Q9SIB2	3-ketoacyl-CoA synthase 12	AT2G28630.1	3-ketoacyl-CoA synthase 12 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079200.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.95782.1.A1_at	A	A1TS	POPTR_0004s07430	POPTR_0004s07430 (11)	scaffold_4:6135516-6136179(+) (11)	NA	Q8H191	Probable polyamine oxidase 4	AT1G65840.1	polyamine oxidase 4 	LOC_Os04g57560.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g086600.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.95782.2.A1_at	A	A1TS	POPTR_0017s01520	POPTR_0017s01520 (11)	scaffold_17:1053245-1053912(+) (11)	NA	Q8H191	Probable polyamine oxidase 4	AT1G65840.1	polyamine oxidase 4 	LOC_Os04g57560.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g086600.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.95783.1.A1_at	A	A1TS	POPTR_0012s04980	POPTR_0012s04980 (10)	scaffold_12:4475780-4479325(+) (10)	NA	A5FIY3	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	AT1G73740.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g33230.1	"UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0030246|carbohydrate binding||GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.95803.1.S1_at	A	A1TS	POPTR_0014s07690	POPTR_0014s07690 (11)	scaffold_14:5763547-5764457(+) (11)	NA	Q8RXK6	DEAD-box ATP-dependent RNA helicase 8	AT4G00660.1	RNAhelicase-like 8 	LOC_Os04g45040.3	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g084670.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.95816.1.A1_at	A	A1TS	POPTR_0008s13270	POPTR_0008s13270 (11)	scaffold_8:8702673-8702789(+) (11)	NA	Q9W1X7	Mediator of RNA polymerase II transcription subunit 23	AT1G23230.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). 	LOC_Os02g49992.1	expressed protein	AC233676_14.1	hypothetical protein AC233676.2 65637-60727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9582.1.A1_a_at	A	A1TS	POPTR_0009s12330	POPTR_0009s12330 (11)	scaffold_9:10075775-10075962(+) (11)	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.9582.1.A1_at	A	A1TS	POPTR_0009s12330	POPTR_0009s12330 (11)	scaffold_9:10075948-10076179(+) (11)	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.9582.3.A1_a_at	A	A2TS	POPTR_0009s12330	POPTR_0009s12330 (11)//POPTR_0004s16600 (10)	scaffold_4:17021440-17021726(-) (10)//scaffold_9:10075142-10075434(+) (11)	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.95826.1.A1_at	A	A1TS	POPTR_0013s12000	POPTR_0013s12000 (11)	scaffold_13:12678325-12678671(-) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr2g103160.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.95832.1.A1_at	A	A1TS	POPTR_0009s01400	POPTR_0009s01400 (10)	scaffold_9:1658753-1659131(+) (10)	NA	NA	NA	AT3G45050.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g51470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95847.1.A1_at	A	A1TS	POPTR_0001s43300	POPTR_0001s43300 (11)	scaffold_1:43338893-43339121(-) (11)	NA	NA	NA	AT4G20380.7	LSD1 zinc finger family protein 	LOC_Os12g41700.1	"LSD1 zinc finger domain containing protein, expressed"	Medtr4g137880.1	"Zinc finger, LSD1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95850.1.A1_at	A	A1TS	POPTR_0006s12360	POPTR_0006s12360 (11)	scaffold_6:9525007-9525206(+) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G22920.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os03g05270.2	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr4g076230.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.95850.1.A1_s_at	A	A1TS	POPTR_0006s12360	POPTR_0006s12360 (11)	scaffold_6:9524412-9524968(+) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G22920.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os03g05270.2	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr4g076230.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.95882.1.A1_a_at	A	A1TS	POPTR_0002s25410	POPTR_0002s25410 (11)	scaffold_2:22474002-22474126(-) (11)	NA	Q8GZM7	Transcription factor PIF1	AT2G20180.3	phytochrome interacting factor 3-like 5 	LOC_Os12g41650.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g118010.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.95882.1.A1_at	A	A1TS	POPTR_0002s25410	POPTR_0002s25410 (11)	scaffold_2:22474141-22474506(-) (11)	NA	Q8GZM7	Transcription factor PIF1	AT2G20180.3	phytochrome interacting factor 3-like 5 	LOC_Os12g41650.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g118010.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.95882.2.A1_s_at	A	A1TS	POPTR_0002s25410	POPTR_0002s25410 (11)	scaffold_2:22474919-22475742(-) (11)	NA	Q8GZM7	Transcription factor PIF1	AT2G20180.3	phytochrome interacting factor 3-like 5 	LOC_Os12g41650.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g118010.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.95889.1.A1_at	A	A1TS	POPTR_0016s15080	POPTR_0016s15080 (9)	scaffold_16:14117703-14117804(-) (9)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21230.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.9589.1.S1_at	A	A1TS	POPTR_0019s03400	POPTR_0019s03400 (11)	scaffold_19:3454656-3455012(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95900.1.A1_at	A	A1TS	POPTR_0007s04750	POPTR_0007s04750 (11)	scaffold_7:2971368-2971843(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.95902.1.A1_at	A	A1TS	POPTR_0009s15080	POPTR_0009s15080 (11)	scaffold_9:11692700-11693071(+) (11)	NA	Q3E7D0	Nucleobase-ascorbate transporter 12	AT2G27810.1	nucleobase-ascorbate transporter 12 	LOC_Os01g63870.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr4g073310.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.95917.1.A1_at	A	A1MS	POPTR_0011s13620	POPTR_0011s13620 (11)	scaffold_11:16339216-16339704(+) (11)	NA	A2RSJ4	UHRF1-binding protein 1-like	AT3G20720.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os04g53670.1	expressed protein	Medtr4g111120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95917.1.A1_s_at	A	A1TS	POPTR_0011s13620	POPTR_0011s13620 (11)	scaffold_11:16339274-16339472(+) (11)	NA	A2RSJ4	UHRF1-binding protein 1-like	AT3G20720.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os04g53670.1	expressed protein	Medtr4g111120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95918.1.A1_s_at	A	A1TS	POPTR_0005s12300	POPTR_0005s12300 (11)	scaffold_5:9082413-9082542(-) (11)	NA	O05235	Uncharacterized hydrolase yugF	AT4G36530.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g47620.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g035000.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95926.1.A1_at	A	A1TS	POPTR_0001s28640	POPTR_0001s28640 (11)	scaffold_1:27432210-27432490(+) (11)	NA	NA	NA	AT3G51780.1	BCL-2-associated athanogene 4 	LOC_Os01g61500.1	"BAG domain containing protein, expressed"	Medtr7g075760.1	"Ubiquitin; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.95928.1.S1_at	A	A1TS	POPTR_0011s02360	POPTR_0011s02360 (10)	scaffold_11:2257529-2258614(-) (10)	NA	Q9FNK5	F-box protein At5g46170	AT5G46170.1	F-box family protein 	LOC_Os05g43490.2	"OsFBX169 - F-box domain containing protein, expressed"	Medtr4g031470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95932.1.A1_at	A	A1TS	POPTR_0009s10380	POPTR_0009s10380 (10)	scaffold_9:8915187-8916294(-) (10)	NA	Q9LDD8	"Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial"	AT4G34030.1	3-methylcrotonyl-CoA carboxylase 	LOC_Os08g32850.1	"methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed"	Medtr4g129940.1	"Acetyl-coenzyme A carboxyltransferase, C-terminal "	NA	GO:0016874|ligase activity	NA
PtpAffx.95936.1.S1_at	A	A1TS	POPTR_0001s02330	POPTR_0001s02330 (11)	scaffold_1:1764886-1765206(+) (11)	NA	Q84UQ3	Zinc finger CCCH domain-containing protein 56	AT1G32360.1	Zinc finger (CCCH-type) family protein 	LOC_Os08g06330.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g078060.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.95937.1.A1_at	A	A1TS	POPTR_0003s08830	POPTR_0003s08830 (11)	scaffold_3:10182458-10182982(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT4G17980.1	NAC domain containing protein 71 	LOC_Os10g42130.1	"no apical meristem protein, putative, expressed"	Medtr8g102910.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.95951.1.A1_at	A	A1TA	POPTR_0012s06660	POPTR_0012s06660 (11)	scaffold_12:7000075-7000598(+) (11)	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT1G73880.1	UDP-glucosyl transferase 89B1 	LOC_Os04g55680.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr2g074330.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95958.1.A1_at	A	A1MS	POPTR_0008s08950	POPTR_0008s08950 (10)	scaffold_8:5553949-5554482(-) (10)	NA	Q9SWH5	Galactoside 2-alpha-L-fucosyltransferase	AT2G03220.1	fucosyltransferase 1 	LOC_Os02g52630.1	"xyloglucan fucosyltransferase, putative, expressed"	Medtr1g112160.1	Xyloglucan fucosyltransferase 	GO:0071554|cell wall organization or biogenesis||GO:0042546|cell wall biogenesis	GO:0008107|galactoside 2-alpha-L-fucosyltransferase activity	GO:0016020|membrane
PtpAffx.95960.1.A1_at	A	A1TS	POPTR_0016s14810	POPTR_0016s14810 (11)	scaffold_16:13939532-13939941(-) (11)	NA	NA	NA	AT5G01970.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). 	LOC_Os05g25070.1	expressed protein	Medtr7g080690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9597.1.S1_a_at	A	A1TS	POPTR_0001s10810	POPTR_0001s10810 (9)	scaffold_1:8408729-8409036(+) (9)	NA	NA	NA	AT5G42070.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g13390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9597.2.S1_at	A	A1TS	POPTR_0003s14160	POPTR_0003s14160 (11)	scaffold_3:14302774-14303082(+) (11)	NA	NA	NA	AT5G42070.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g13390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9597.4.S1_at	A	A1TS	POPTR_0001s10810	POPTR_0001s10810 (9)	scaffold_1:8408045-8408234(+) (9)//scaffold_1840:2267-2456(+) (9)	NA	NA	NA	AT5G42070.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g13390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95975.1.A1_at	A	A1TS	POPTR_0007s04140	POPTR_0007s04140 (11)	scaffold_7:2500518-2500757(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G33450.1	myb domain protein 69 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr5g044760.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95982.1.S1_at	A	A1TS	POPTR_0008s15830	POPTR_0008s15830 (11)	scaffold_8:10535630-10536389(-) (11)	NA	Q96449	Meiotic recombination protein DMC1 homolog	AT3G22880.1	DNA repair (Rad51) family protein 	LOC_Os11g04954.1	"DNA repair protein Rad51, putative, expressed"	Medtr8g133290.1	"AAA ATPase; Rad51, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96019.1.A1_at	A	A1MS	POPTR_0008s05190	POPTR_0008s05190 (9)	scaffold_8:3005482-3005721(-) (9)	NA	Q9AT34	40S ribosomal protein S15a	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.96071.1.S1_at	A	A1TS	POPTR_0001s32830	POPTR_0001s32830 (11)	scaffold_1:31130766-31131489(+) (11)	NA	Q55DL2	UPF0558 protein	AT4G14000.1	Putative methyltransferase family protein 	LOC_Os09g19570.1	"AGAP009532-PA, putative, expressed"	Medtr2g118160.2	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96155.1.S1_at	A	A1TS	POPTR_0006s11200	POPTR_0006s11200 (11)	scaffold_6:8509749-8510216(-) (11)	NA	NA	NA	AT3G08640.1	Protein of unknown function (DUF3411) 	LOC_Os01g59740.1	expressed protein	Medtr7g080590.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96155.2.S1_a_at	A	A1TS	POPTR_0006s11200	POPTR_0006s11200 (11)	scaffold_6:8511015-8511260(-) (11)	NA	NA	NA	AT3G08640.1	Protein of unknown function (DUF3411) 	LOC_Os01g59740.1	expressed protein	Medtr7g080590.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96160.1.S1_at	A	A1TS	POPTR_0006s06690	POPTR_0006s06690 (11)	scaffold_6:4841401-4841894(-) (11)	NA	NA	NA	AT1G15340.1	methyl-CPG-binding domain 10 	LOC_Os12g42550.1	"methyl-CpG binding domain containing protein, putative, expressed"	Medtr8g120690.1	Methyl-CpG binding 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.96180.1.S1_s_at	A	A1TS	POPTR_0030s00230	POPTR_0030s00230 (11)	scaffold_30:45767-46925(-) (11)	NA	NA	NA	AT3G05100.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g47150.2	expressed protein	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.96192.1.S1_s_at	A	A1TS	POPTR_0006s07240	POPTR_0006s07240 (11)	scaffold_6:5190614-5192127(-) (11)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.9620.1.S1_at	A	A1TS	POPTR_0017s11100	POPTR_0017s11100 (10)	scaffold_17:10768567-10770008(-) (10)	NA	Q8LFL4	CLAVATA3/ESR (CLE)-related protein 25	AT3G28455.1	CLAVATA3/ESR-RELATED 25 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9622.1.S1_at	A	A1TS	POPTR_0004s07890	POPTR_0004s07890 (10)	scaffold_4:6443109-6444254(-) (10)	NA	Q54BW6	Tetratricopeptide repeat protein 27 homolog	AT5G17270.1	Protein prenylyltransferase superfamily protein 	LOC_Os07g27180.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g151900.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9623.1.S1_s_at	A	A1TS	POPTR_0018s08110	POPTR_0018s08110 (11)	scaffold_18:8922367-8922401(+) (11)	NA	Q39123	Homeobox-leucine zipper protein ATHB-8	AT4G32880.1	homeobox gene 8 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr3g130470.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.9623.2.S1_at	A	A1TS	POPTR_0006s11750	POPTR_0006s11750 (11)	scaffold_6:8942383-8943277(-) (11)	NA	Q9LDR4	Delta(14)-sterol reductase	AT3G52940.1	Ergosterol biosynthesis ERG4/ERG24 family 	LOC_Os09g39220.1	"delta14-sterol reductase, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.9623.3.A1_at	A	A1TS	POPTR_0006s25390	POPTR_0006s25390 (9)	scaffold_6:23785914-23786256(-) (9)	NA	Q39123	Homeobox-leucine zipper protein ATHB-8	AT4G32880.1	homeobox gene 8 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr3g130470.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.96230.1.A1_s_at	A	A1TS	POPTR_0004s13640	POPTR_0004s13640 (11)	scaffold_4:13995102-13995369(+) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96245.1.S1_at	A	A1TS	POPTR_0007s11090	POPTR_0007s11090 (11)	scaffold_7:11354099-11354791(-) (11)	NA	NA	NA	AT3G50370.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). 	NA	NA	CU571152_13.1	hypothetical protein CU571152.5 45352-54530 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96246.1.S1_s_at	A	A2TS	POPTR_0006s06600	POPTR_0018s12880 (11)//POPTR_0006s06600 (11)	scaffold_18:13382634-13382887(+) (11)//scaffold_6:4801739-4801993(+) (11)	NA	NA	NA	AT3G24150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96295.1.S1_s_at	A	A1TS	POPTR_0015s04140	POPTR_0015s04140 (11)	scaffold_15:4162199-4163157(+) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.963.1.A1_at	A	A1TS	POPTR_0003s09070	POPTR_0003s09070 (9)	scaffold_3:10402380-10403050(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96312.1.S1_s_at	A	A1TS	POPTR_0010s08580	POPTR_0010s08580 (11)	scaffold_10:9497008-9497274(+) (11)	NA	Q8RY18	MATH domain-containing protein At5g43560	AT1G04300.1	TRAF-like superfamily protein 	LOC_Os12g40520.1	"MATH domain containing protein, expressed"	Medtr1g064840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9632.1.S1_at	A	A1TS	POPTR_0013s14830	POPTR_0013s14830 (11)	scaffold_13:14938581-14939063(+) (11)	NA	NA	NA	AT2G16030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g42140.1	"methyltransferase domain containing protein, expressed"	Medtr4g078870.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.9633.1.S1_at	A	A1TS	POPTR_0014s04360	POPTR_0014s04360 (11)	scaffold_14:3409673-3410109(-) (11)	NA	Q8GT41	Putative invertase inhibitor	AT5G46940.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os02g01300.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr8g009110.1	"Putative invertase inhibitor precursor, "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.96429.1.S1_at	A	A1MS	POPTR_0002s08310	POPTR_0002s08310 (10)	scaffold_2:5804895-5805734(+) (10)	POPTR_0005s20100 (6)	Q9XI00	F-box protein 7	AT1G21760.1	F-box protein 7 	LOC_Os04g35190.1	"OsFBX133 - F-box domain containing protein, expressed"	Medtr3g100510.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96489.1.S1_at	A	A1TS	POPTR_0015s01170	POPTR_0015s01170 (9)	scaffold_15:727313-727863(-) (9)	NA	O95714	E3 ubiquitin-protein ligase HERC2	AT3G26100.2	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os12g18650.4	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr3g102750.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96516.1.S1_s_at	A	A1TS	POPTR_0012s07110	POPTR_0012s07110 (11)	scaffold_12:7805480-7806275(+) (11)	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os02g51290.1	"HVA22, putative, expressed"	Medtr8g112530.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96550.1.S1_at	A	A1TS	POPTR_0014s11430	POPTR_0014s11430 (11)	scaffold_14:8504521-8504947(+) (11)	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT4G02010.1	Protein kinase superfamily protein 	LOC_Os01g14932.1	"NAK-like ser/thr protein kinase, putative, expressed"	Medtr7g133110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.96550.2.S1_s_at	A	A1TS	POPTR_0002s19550	POPTR_0002s19550 (10)	scaffold_184:26770-26970(-) (9)//scaffold_2:15520978-15521727(+) (10)	NA	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT4G02010.1	Protein kinase superfamily protein 	LOC_Os01g14932.1	"NAK-like ser/thr protein kinase, putative, expressed"	Medtr7g133110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.96558.1.A1_at	A	A1TS	POPTR_0009s12880	POPTR_0009s12880 (11)	scaffold_9:10423897-10424430(+) (11)	NA	P33083	Auxin-induced protein 6B	AT1G75590.1	SAUR-like auxin-responsive protein family  	LOC_Os04g56680.1	"OsSAUR22 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g097600.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96560.1.S1_s_at	A	A1TS	POPTR_0002s21700	POPTR_0002s21700 (11)	scaffold_2:18253798-18254208(+) (11)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.96568.1.S1_s_at	A	A3TS	POPTR_0006s18650	POPTR_0006s18690 (11)//POPTR_0006s18650 (11)//POPTR_0006s18670 (11)	scaffold_6:17213858-17214195(-) (11)//scaffold_6:17234210-17234547(-) (11)//scaffold_6:17254570-17254907(-) (11)	NA	A6XNC6	Flavonoid 3-O-glucosyltransferase	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128440.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9657.1.A1_at	A	A1TS	POPTR_0014s04030	POPTR_0014s04030 (11)	scaffold_14:3196961-3197533(-) (11)	NA	Q29AK2	Leishmanolysin-like peptidase	AT5G42620.2	metalloendopeptidases;zinc ion binding 	LOC_Os03g52150.1	"metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed"	NA	NA	GO:0006508|proteolysis||GO:0007155|cell adhesion||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016020|membrane
PtpAffx.96581.1.S1_at	A	A1TS	POPTR_0012s09220	POPTR_0012s09220 (11)	scaffold_12:10270318-10271183(+) (11)	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96594.1.S1_at	A	A1TS	POPTR_0014s07530	POPTR_0014s07530 (11)	scaffold_14:5657671-5658184(-) (11)	NA	Q6DW73	"Digalactosyldiacylglycerol synthase 2, chloroplastic"	AT4G00550.1	digalactosyl diacylglycerol deficient 2 	LOC_Os03g11560.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr6g093420.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.96638.1.S1_at	A	A1TS	POPTR_0010s05690	POPTR_0010s05690 (10)	scaffold_10:7174850-7175232(-) (10)	NA	Q5KS50	Coleoptile phototropism protein 1	AT1G67900.3	Phototropic-responsive NPH3 family protein 	LOC_Os02g38120.1	"BTBN3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr5g034190.1	NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.96651.1.S1_at	A	A1TS	POPTR_0002s15460	POPTR_0002s15460 (11)	scaffold_2:11557538-11558136(+) (11)	NA	Q8LDS2	Probable xyloglucan endotransglucosylase/hydrolase protein 27	AT2G01850.1	endoxyloglucan transferase A3 	LOC_Os03g02610.1	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g045390.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.96676.1.S1_at	A	A1TS	POPTR_0003s16780	POPTR_0003s16780 (11)	scaffold_3:16312263-16312542(+) (11)	NA	Q6YZE8	Squamosa promoter-binding-like protein 16	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.96695.1.S1_at	A	A1TS	POPTR_0014s01320	POPTR_0014s01320 (10)	scaffold_14:1308345-1309017(+) (10)	NA	NA	NA	AT2G22840.1	growth-regulating factor 1 	LOC_Os03g51970.1	"growth-regulating factor, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.967.2.S1_s_at	A	A1TS	POPTR_0007s05650	POPTR_0007s05650 (11)	scaffold_7:3710462-3710962(-) (11)	NA	NA	NA	AT2G22170.1	"Lipase/lipooxygenase, PLAT/LH2 family protein "	LOC_Os06g11812.1	"wound/stress protein, putative, expressed"	Medtr3g101350.1	"Lipase/lipooxygenase, PLAT/LH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96723.1.S1_at	A	A1TS	POPTR_0013s02210	POPTR_0013s02210 (11)	scaffold_13:1313544-1314273(-) (11)	NA	Q5H7P5	Mannosylglycoprotein endo-beta-mannosidase	AT1G09010.1	glycoside hydrolase family 2 protein 	LOC_Os05g32530.1	"mannosylglycoprotein endo-beta-mannosidase, putative, expressed"	Medtr1g099500.1	"Glycoside hydrolase family 2, sugar binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.96735.1.A1_at	A	A1TS	POPTR_0004s00710	POPTR_0004s00710 (11)	scaffold_4:285614-285799(-) (11)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT4G22130.1	STRUBBELIG-receptor family 8 	LOC_Os02g09740.1	"STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed"	Medtr7g111570.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.9674.1.A1_at	A	A2TS	POPTR_0005s00200	POPTR_0005s00200 (10)//POPTR_0005s00240 (9)	scaffold_5:5040-6792(-) (9)//scaffold_5:25615-26149(-) (9)	NA	Q8L7S8	"DEAD-box ATP-dependent RNA helicase 3, chloroplastic"	AT5G26742.2	DEAD box RNA helicase (RH3) 	LOC_Os03g61220.2	"DEAD-box ATP-dependent RNA helicase 3, putative, expressed"	Medtr7g134530.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.9674.1.A1_s_at	A	A1TS	POPTR_0005s00240	POPTR_0005s00240 (11)	scaffold_5:26134-26344(-) (11)	POPTR_0005s00200 (7)	Q8L7S8	"DEAD-box ATP-dependent RNA helicase 3, chloroplastic"	AT5G26742.2	DEAD box RNA helicase (RH3) 	LOC_Os03g61220.1	"DEAD-box ATP-dependent RNA helicase 3, putative, expressed"	Medtr7g134530.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.96746.1.S1_at	A	A1TS	POPTR_0009s01200	POPTR_0009s01200 (11)	scaffold_9:1381740-1381895(+) (11)	NA	Q9LFP3	Probable glycosyltransferase At5g11130	AT2G28110.1	Exostosin family protein 	LOC_Os03g01760.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.96771.1.A1_at	A	A1TS	POPTR_0010s17860	POPTR_0010s17860 (11)	scaffold_10:16308637-16309462(+) (11)	NA	Q42961	"Phosphoglycerate kinase, chloroplastic"	AT3G12780.1	phosphoglycerate kinase 1 	LOC_Os05g41640.2	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077510.1	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
PtpAffx.96776.2.S1_at	A	A1TS	POPTR_0006s02770	POPTR_0006s02770 (10)	scaffold_6:1746780-1747221(-) (10)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT5G05080.2	ubiquitin-conjugating enzyme 22 	LOC_Os06g45000.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g104500.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.968.1.A1_at	A	A1TS	POPTR_0018s06150	POPTR_0018s06150 (11)	scaffold_18:5789508-5790057(+) (11)	NA	Q9T0K5	Leucine-rich repeat extensin-like protein 3	AT4G13340.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g41120.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr6g102080.1	Leucine-rich repeat 	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall||GO:0005515|protein binding	NA
PtpAffx.9682.1.A1_a_at	A	A1TS	POPTR_0003s15530	POPTR_0003s15530 (11)	scaffold_3:15287124-15287420(+) (11)	NA	NA	NA	AT4G20170.1	Domain of unknown function (DUF23) 	LOC_Os06g22330.1	expressed protein	Medtr8g084210.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96831.1.S1_s_at	A	A1TS	POPTR_0014s11270	POPTR_0014s11270 (10)	scaffold_14:8389532-8389930(+) (10)	NA	Q9NPF5	DNA methyltransferase 1-associated protein 1	AT2G47210.1	myb-like transcription factor family protein 	LOC_Os05g46330.1	"MYB family transcription factor, putative, expressed"	Medtr7g133340.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9685.1.S1_at	A	A1TS	POPTR_0001s38010	POPTR_0001s38010 (11)	scaffold_1:37066505-37067036(+) (11)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT5G55970.2	RING/U-box superfamily protein 	LOC_Os01g50750.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g079910.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96911.1.S1_at	A	A1TS	POPTR_0014s02680	POPTR_0014s02680 (10)	scaffold_14:2225329-2225651(+) (10)	NA	NA	NA	AT1G45976.1	S-ribonuclease binding protein 1 	LOC_Os03g15730.1	"S-RNase-binding protein, putative, expressed"	Medtr1g024220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96963.1.S1_at	A	A1TS	POPTR_0006s25170	POPTR_0006s25170 (9)	scaffold_6:23594934-23595905(-) (9)	NA	Q94AA4	6-phosphofructokinase 3	AT4G26270.1	phosphofructokinase 3 	LOC_Os01g09570.1	"6-phosphofructokinase, putative, expressed"	Medtr3g128190.1	Phosphofructokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96969.1.S1_s_at	A	A1TS	POPTR_0005s11850	POPTR_0005s11850 (11)	scaffold_5:8611915-8612331(+) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	Medtr8g090220.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.97004.1.S1_at	A	A1TS	POPTR_0006s04980	POPTR_0006s04980 (11)	scaffold_6:3474729-3476089(+) (11)	NA	O65628	Cytoplasmic tRNA 2-thiolation protein 2	AT4G35910.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os12g39840.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97010.1.S1_s_at	A	A4TS	POPTR_0011s04970	POPTR_0011s04980 (11)//POPTR_0909s00200 (11)//POPTR_0011s04970 (11)//POPTR_1449s00200 (10)	scaffold_11:4929840-4930238(-) (11)//scaffold_11:4942852-4943250(-) (11)//scaffold_1449:188-395(+) (10)//scaffold_909:615-1011(+) (11)	NA	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.9703.1.A1_a_at	A	A1TS	POPTR_0018s14630	POPTR_0018s14630 (11)	scaffold_18:14756875-14757168(-) (11)	NA	NA	NA	AT2G07360.1	SH3 domain-containing protein 	LOC_Os03g15900.2	"SH3 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9704.1.S1_at	A	A1MS	POPTR_0013s04470	POPTR_0013s04470 (9)	scaffold_13:3069150-3069364(+) (9)	NA	Q86YJ7	Ankyrin repeat domain-containing protein 13B	AT3G04470.1	Ankyrin repeat family protein 	LOC_Os02g56530.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97042.1.S1_s_at	A	A1TS	POPTR_0018s01880	POPTR_0018s01880 (11)	scaffold_18:1697342-1700122(-) (11)	POPTR_0006s27210 (6)	NA	NA	AT4G32160.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr3g137530.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.97065.1.S1_at	A	A1TA	POPTR_0003s10400	POPTR_0003s10400 (11)	scaffold_3:11399167-11399313(-) (11)	NA	P41091	Eukaryotic translation initiation factor 2 subunit 3	AT1G04170.1	eukaryotic translation initiation factor 2 gamma subunit 	LOC_Os12g41400.1	"eukaryotic translation initiation factor 2 subunit gamma, putative, expressed"	Medtr2g091680.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.9707.1.S1_at	A	A1TS	POPTR_0005s07220	POPTR_0005s07220 (9)	scaffold_5:4885169-4885682(-) (9)	NA	Q9LX93	E3 ubiquitin-protein ligase RING1	AT5G10380.1	RING/U-box superfamily protein 	LOC_Os04g37740.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g120960.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97075.1.S1_at	A	A1TS	POPTR_0017s08230	POPTR_0017s08230 (11)	scaffold_17:6686677-6686821(+) (11)	NA	Q9MAT6	High mobility group B protein 15	AT1G04880.1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain 	LOC_Os02g27060.1	"high mobility group, putative, expressed"	Medtr1g146490.1	HMG1/2 (high mobility group) box; AT-rich interaction region 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.971.1.A1_at	A	A1TS	POPTR_0019s06250	POPTR_0019s06250 (11)	scaffold_19:6897949-6900244(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97116.1.S1_at	A	A1TS	POPTR_0004s13410	POPTR_0004s13410 (10)	scaffold_4:13451591-13451756(+) (10)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.97162.1.A1_at	A	A1TS	POPTR_0001s37270	POPTR_0001s37270 (11)	scaffold_1:36252616-36253077(-) (11)	NA	Q8H125	Scarecrow-like protein 5	AT1G50600.1	scarecrow-like 5 	LOC_Os07g39470.1	"gibberellin response modulator protein, putative, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97165.1.A1_at	A	A1TS	POPTR_0001s15200	POPTR_0001s15200 (11)	scaffold_1:12044187-12044510(-) (11)	NA	Q9SHC8	Vesicle-associated protein 1-2	AT2G45140.1	plant VAP homolog 12 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr5g012520.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.97165.2.A1_a_at	A	A1TS	POPTR_0001s15200	POPTR_0001s15200 (11)	scaffold_1:12044617-12046081(-) (11)	NA	Q9SHC8	Vesicle-associated protein 1-2	AT2G45140.1	plant VAP homolog 12 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr5g012520.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.9717.1.S1_at	A	A1MS	POPTR_0002s10820	POPTR_0002s10820 (9)	scaffold_2:7843086-7844136(-) (10)	NA	Q80X82	Symplekin	AT1G27595.1	CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). 	LOC_Os01g49940.2	"ESP4, putative, expressed"	Medtr3g127800.1	"T17H3.9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97176.1.A1_at	A	A1TS	POPTR_0001s44570	POPTR_0001s44570 (9)	scaffold_1:45020996-45021969(-) (9)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.9720.1.S1_a_at	A	A1TA	POPTR_0002s11480	POPTR_0002s11480 (11)	scaffold_2:8527753-8528038(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9721.1.A1_at	A	A1TS	POPTR_0004s15570	POPTR_0004s15570 (11)	scaffold_4:16180979-16182078(+) (11)	NA	A7SGU6	Proteasome assembly chaperone 2	AT3G18940.1	clast3-related 	LOC_Os03g55784.1	"tumor necrosis factor superfamily, member 5-induced protein 1, putative, expressed"	Medtr4g093120.1	"cell cycle-regulated protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97222.1.A1_at	A	A1TS	POPTR_0013s02940	POPTR_0013s02940 (11)	scaffold_13:1781934-1782786(+) (11)	NA	Q8CCN5	Breast carcinoma-amplified sequence 3 homolog	AT1G54710.1	homolog of yeast autophagy 18 (ATG18) H 	LOC_Os05g33610.2	expressed protein	Medtr1g098850.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9726.1.A1_s_at	A	A1TS	POPTR_0009s01890	POPTR_0009s01890 (11)	scaffold_9:2367674-2368808(+) (11)	NA	NA	NA	AT5G60580.3	RING/U-box superfamily protein 	LOC_Os06g46366.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr4g081620.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97262.1.A1_s_at	A	A1TS	POPTR_0001s25360	POPTR_0001s25360 (11)	scaffold_1:24517461-24517823(+) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT5G59010.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97270.1.A1_s_at	A	A1TS	POPTR_0001s20610	POPTR_0001s20610 (11)	scaffold_1:18605845-18606069(+) (11)	NA	NA	NA	AT1G72790.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g120690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97277.1.S1_at	A	A1TS	POPTR_0001s00610	POPTR_0001s00610 (11)	scaffold_1:517138-517603(-) (11)	NA	Q8VYC8	E3 ubiquitin protein ligase RIN2	AT4G25230.2	RPM1 interacting protein 2 	LOC_Os07g30100.1	"RIN3, putative, expressed"	Medtr3g009010.1	"Zinc finger, RING-type; Ubiquitin system component Cue "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97302.1.A1_at	A	A1MS	POPTR_0006s23950	POPTR_0006s23950 (9)	scaffold_6:22676201-22676622(-) (9)	NA	Q10166	UPF0012 hydrolase C26A3.11	AT5G12040.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein 	LOC_Os03g07910.1	"nitrilase, putative, expressed"	Medtr3g139470.1	Protein of unknown function UPF0012 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.97303.1.A1_at	A	A1TS	POPTR_0006s19200	POPTR_0006s19200 (11)	scaffold_6:18178614-18179126(-) (11)	NA	NA	NA	AT1G67170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). 	LOC_Os04g40300.1	"transglutaminase, putative, expressed"	Medtr2g071550.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97306.1.S1_at	A	A1TS	POPTR_0012s13680	POPTR_0012s13680 (11)	scaffold_12:13729092-13729673(-) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT5G62090.2	SEUSS-like 2 	LOC_Os06g03600.3	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97309.1.A1_s_at	A	A1TS	POPTR_0014s15760	POPTR_0014s15760 (11)	scaffold_14:11823402-11824071(+) (11)	NA	Q6YSJ5	Protein argonaute 16	AT2G32940.1	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr3g105930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9731.1.S1_at	A	A1TS	POPTR_0005s26380	POPTR_0005s26380 (11)	scaffold_5:24426817-24427265(-) (11)	NA	NA	NA	AT2G17787.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35940.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr1g039730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9731.2.S1_at	A	A1MS	POPTR_0002s02070	POPTR_0002s02070 (11)	scaffold_2:1113623-1114090(+) (11)	NA	NA	NA	AT1G20100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 471 Blast hits to 438 proteins in 92 species: Archae - 0; Bacteria - 14; Metazoa - 217; Fungi - 43; Plants - 91; Viruses - 1; Other Eukaryotes - 105 (source: NCBI BLink). 	NA	NA	Medtr1g039730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97321.1.A1_at	A	A1TS	POPTR_0006s08160	POPTR_0006s08160 (11)	scaffold_6:5930341-5930497(-) (11)	NA	Q9S9X4	Putative F-box/LRR-repeat protein 8	AT4G07400.1	VIER F-box proteine 3 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9734.1.A1_s_at	A	A1TS	POPTR_0005s16630	POPTR_0005s16630 (11)	scaffold_5:13611485-13611823(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9736.1.A1_at	A	A1TS	POPTR_0005s14150	POPTR_0005s14150 (10)	scaffold_5:11236238-11236634(-) (10)	NA	Q9FKZ3	LOB domain-containing protein 36	AT5G66870.1	ASYMMETRIC LEAVES 2-like 1 	LOC_Os03g41600.1	"DUF260 domain containing protein, putative"	Medtr5g017910.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9739.1.S1_at	A	A1TS	POPTR_0006s29270	POPTR_0006s29270 (11)	scaffold_6:26688361-26688802(-) (11)	NA	NA	NA	AT4G31330.1	"Protein of unknown function, DUF599 "	LOC_Os08g40940.1	expressed protein	Medtr3g132930.1	Protein of unknown function DUF599 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97408.1.S1_at	A	A1TS	POPTR_0001s33840	POPTR_0001s33840 (11)	scaffold_1:31997711-32000350(+) (11)	NA	Q8TP15	Protease HtpX homolog 2	AT3G27110.2	Peptidase family M48 family protein 	LOC_Os01g73910.2	"peptidase, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
PtpAffx.97442.1.S1_s_at	A	A2TS	POPTR_0012s08140	POPTR_0015s08640 (11)//POPTR_0012s08140 (11)	scaffold_12:9195063-9195381(+) (11)//scaffold_15:9957712-9958030(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT1G62400.1	Protein kinase superfamily protein 	LOC_Os01g01740.1	"protein kinase domain containing protein, expressed"	Medtr3g113630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.97444.1.S1_at	A	A1TS	POPTR_0001s47100	POPTR_0001s47100 (11)	scaffold_1:47424084-47424561(+) (11)	NA	Q5BQN5	WPP domain-associated protein (Fragment)	AT2G34730.1	myosin heavy chain-related 	LOC_Os12g41810.1	expressed protein	Medtr2g129750.1	"WPP domain associated protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9745.1.A1_at	A	A1TS	POPTR_0011s05970	POPTR_0011s05970 (11)	scaffold_11:5990950-5991447(-) (11)	NA	Q40521	Ras-related protein Rab11B	AT5G60860.1	RAB GTPase homolog A1F 	LOC_Os09g15790.1	"ras-related protein, putative, expressed"	Medtr2g018470.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.9747.1.S1_at	A	A1MS	POPTR_0013s15060	POPTR_0013s15060 (10)	scaffold_13:15110311-15110570(-) (10)	NA	NA	NA	AT5G58340.2	myb-like HTH transcriptional regulator family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9748.1.A1_at	A	A1TS	POPTR_0001s18340	POPTR_0001s18340 (11)	scaffold_1:15384545-15384920(-) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT3G24550.1	proline extensin-like receptor kinase 1 	LOC_Os05g12680.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g159530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.97482.1.S1_at	A	A1TS	POPTR_0014s11730	POPTR_0014s11730 (10)	scaffold_14:8698406-8698731(+) (10)	NA	Q94KD8	Probable beta-D-xylosidase 2	AT1G02640.1	beta-xylosidase 2 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.97486.1.S1_at	A	A1TS	POPTR_0007s10670	POPTR_0007s10670 (11)	scaffold_7:10721598-10721795(+) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.9749.1.A1_at	A	A1MS	POPTR_0006s20740	POPTR_0006s20740 (9)	scaffold_6:19717413-19717580(-) (9)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g22290.1	"legume lectins beta domain containing protein, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.97498.1.S1_at	A	A1TS	POPTR_0005s21760	POPTR_0005s21760 (11)	scaffold_5:20866892-20867431(+) (11)	NA	NA	NA	AT4G09890.1	Protein of unknown function (DUF3511) 	LOC_Os06g47220.1	expressed protein	Medtr1g124780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.975.2.S1_at	A	A1TS	POPTR_0019s07680	POPTR_0019s07680 (10)	scaffold_19:8748552-8750351(+) (10)	NA	Q9Y3E5	"Peptidyl-tRNA hydrolase 2, mitochondrial"	AT5G16870.1	Peptidyl-tRNA hydrolase II (PTH2) family protein 	LOC_Os04g55860.1	"peptidyl-tRNA hydrolase, putative, expressed"	Medtr4g100820.1	Protein of unknown function UPF0099 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004045|aminoacyl-tRNA hydrolase activity	NA
PtpAffx.975.3.S1_at	A	A1TS	POPTR_0013s07870	POPTR_0013s07870 (9)	scaffold_13:6802099-6802581(-) (11)	NA	Q3ZBL5	"Peptidyl-tRNA hydrolase 2, mitochondrial"	AT3G03010.2	Peptidyl-tRNA hydrolase II (PTH2) family protein 	LOC_Os04g55860.1	"peptidyl-tRNA hydrolase, putative, expressed"	Medtr4g100820.1	Protein of unknown function UPF0099 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004045|aminoacyl-tRNA hydrolase activity	NA
PtpAffx.9750.1.A1_at	A	A1TS	POPTR_0017s14430	POPTR_0017s14430 (10)	scaffold_17:14487279-14487380(+) (10)	NA	NA	NA	AT5G57685.1	glutamine dumper 3 	LOC_Os06g42660.1	expressed protein	Medtr3g138690.1	GDU1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97555.1.S1_at	A	A1TS	POPTR_0004s22240	POPTR_0004s22240 (10)	scaffold_4:21159864-21162035(-) (10)	NA	Q6P0I8	Exosome complex exonuclease MTR3	AT4G27490.1	3'-5'-exoribonuclease family protein 	LOC_Os03g62720.1	"exosome complex exonuclease, putative, expressed"	AC233683_7.2	3 exoribonuclease AC233683.2 46787-40903 F EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.97555.1.S1_s_at	A	A2TS	POPTR_0004s22240	POPTR_0009s01580 (11)//POPTR_0004s22240 (11)	scaffold_4:21160253-21161968(-) (11)//scaffold_9:2052838-2054494(+) (11)	NA	Q6P0I8	Exosome complex exonuclease MTR3	AT4G27490.1	3'-5'-exoribonuclease family protein 	LOC_Os03g62720.1	"exosome complex exonuclease, putative, expressed"	AC233683_7.2	3 exoribonuclease AC233683.2 46787-40903 F EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.97561.1.S1_at	A	A1TS	POPTR_0003s04720	POPTR_0003s04720 (9)	scaffold_3:5716792-5717577(+) (9)	NA	Q54J88	MMS19 nucleotide excision repair protein homolog	AT5G48120.1	ARM repeat superfamily protein 	LOC_Os07g08050.1	expressed protein	Medtr5g093260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9757.1.A1_at	A	A1TS	POPTR_0011s11100	POPTR_0011s11100 (11)	scaffold_11:13768466-13769009(+) (11)	NA	P81898	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	AT3G14920.1	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein 	LOC_Os01g10930.1	"peptide-N4-asparagine amidase A, putative, expressed"	Medtr1g028750.1	"Peptide-N4-asparagine amidase A, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9758.1.A1_at	A	A1TS	POPTR_0017s09240	POPTR_0017s09240 (11)	scaffold_17:7873887-7874223(+) (11)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35300.1	"TKL_IRAK_DUF26-lc.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_26.1	Tyrosine protein kinase AC235009.1 109110-106484 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9758.2.A1_at	A	A1TS	POPTR_0011s03240	POPTR_0011s03240 (10)	scaffold_11:3389641-3390305(-) (10)//scaffold_11:3457298-3457962(-) (10)	NA	Q9T0J1	Cysteine-rich receptor-like protein kinase 26	AT4G38830.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 26 	LOC_Os07g35290.1	"TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235005_21.1	Tyrosine protein kinase AC235005.1 68612-71230 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97585.1.S1_at	A	A1TS	POPTR_0005s25030	POPTR_0005s25030 (11)	scaffold_5:23398615-23399150(+) (11)	NA	P52577	Isoflavone reductase homolog P3	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr5g020630.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.976.1.A1_at	A	A1TS	POPTR_0007s10960	POPTR_0007s10960 (11)	scaffold_7:11183829-11184351(+) (11)	NA	P61872	Lipase	AT5G67050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr5g017200.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.97600.1.A1_at	A	A1TS	POPTR_0009s01490	POPTR_0009s01490 (11)	scaffold_9:1862131-1862849(+) (11)	NA	NA	NA	AT5G60720.1	"Protein of unknown function, DUF547 "	LOC_Os03g64230.1	expressed protein	Medtr5g087330.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9762.1.S1_at	A	A1TS	POPTR_0009s16310	POPTR_0009s16310 (11)	scaffold_9:12435978-12436442(+) (11)	POPTR_0004s21070 (7)	Q9LXM2	Probable CCR4-associated factor 1 homolog 9	AT3G44260.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr4g149580.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.97624.1.S1_s_at	A	A1TS	POPTR_0006s04270	POPTR_0006s04270 (11)	scaffold_6:2926404-2926863(-) (11)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.97624.2.A1_at	A	A1TA	POPTR_0006s04270	POPTR_0006s04270 (10)	scaffold_6:2926372-2926518(+) (10)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.9763.1.S1_at	A	A1TS	POPTR_0013s15690	POPTR_0013s15690 (11)	scaffold_13:15593404-15594634(-) (11)	NA	NA	NA	AT5G58250.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os03g21370.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9764.1.A1_a_at	A	A1TS	POPTR_0001s17770	POPTR_0001s17770 (11)	scaffold_1:14622371-14623579(-) (11)	NA	O24407	Auxin-responsive protein IAA16	AT3G04730.1	indoleacetic acid-induced protein 16 	LOC_Os03g43400.1	"OsIAA11 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.97650.1.S1_at	A	A1TS	POPTR_0012s02610	POPTR_0012s02610 (11)	scaffold_12:2133028-2134272(-) (11)	NA	Q9T096	Protein yippee-like At4g27745	AT4G27745.1	Yippee family putative zinc-binding protein 	LOC_Os12g29960.1	"yippee zinc-binding protein, putative"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97659.1.S1_s_at	A	A1TS	POPTR_0001s45410	POPTR_0001s45410 (11)	scaffold_1:45895151-45895314(-) (11)	NA	Q9NQZ5	"StAR-related lipid transfer protein 7, mitochondrial"	AT1G64720.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g02910.1	"membrane related protein CP5, putative, expressed"	Medtr3g122780.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9767.1.S1_at	A	A1TS	POPTR_0007s11650	POPTR_0007s11650 (11)	scaffold_7:12028912-12029616(-) (11)	POPTR_0007s11680 (8)	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23620.1	methyl esterase 1 	LOC_Os01g57770.1	"OsPOP4 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g018420.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97684.1.S1_at	A	A1TS	POPTR_0010s21170	POPTR_0010s21170 (9)	scaffold_10:18558259-18558733(-) (9)	NA	NA	NA	AT4G26055.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g07614.1	expressed protein	Medtr7g026990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9769.1.S1_at	A	A1TS	POPTR_0017s12550	POPTR_0017s12550 (11)	scaffold_17:12718017-12718418(-) (11)	NA	O65718	Cyclic nucleotide-gated ion channel 2	AT5G15410.1	Cyclic nucleotide-regulated ion channel family protein 	LOC_Os03g55100.1	"cyclic nucleotide-gated ion channel 2, putative, expressed"	Medtr7g011470.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9769.2.S1_a_at	A	A1TS	POPTR_0017s12550	POPTR_0017s12550 (11)	scaffold_17:12719026-12719240(-) (11)	NA	O65718	Cyclic nucleotide-gated ion channel 2	AT5G15410.1	Cyclic nucleotide-regulated ion channel family protein 	LOC_Os03g55100.1	"cyclic nucleotide-gated ion channel 2, putative, expressed"	Medtr7g011470.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.977.1.S1_at	A	A1MS	POPTR_0002s23280	POPTR_0002s23280 (9)	scaffold_2:20744964-20745258(+) (10)	NA	P28187	Ras-related protein ARA-4	AT3G07410.1	RAB GTPase homolog A5B 	LOC_Os08g41340.1	"ras-related protein, putative, expressed"	Medtr7g046180.1	"Ras-related protein ARA-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9770.1.A1_at	A	A1TS	POPTR_0008s22010	POPTR_0008s22010 (11)	scaffold_8:16358206-16358706(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	LOC_Os09g30020.1	"retrotransposon protein, putative, unclassified"	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9771.1.A1_at	A	A1TS	POPTR_0005s08480	POPTR_0005s08480 (11)	scaffold_5:5876644-5877173(-) (11)	NA	Q9C550	"2-isopropylmalate synthase 2, chloroplastic"	AT1G74040.1	2-isopropylmalate synthase 1 	LOC_Os11g04670.1	"2-isopropylmalate synthase B, putative, expressed"	Medtr1g146810.1	Alpha-isopropylmalate/homocitrate synthase; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009098|leucine biosynthetic process	GO:0003852|2-isopropylmalate synthase activity	NA
PtpAffx.97732.1.S1_s_at	A	A1TS	POPTR_0019s04910	POPTR_0019s04910 (11)	scaffold_19:5136924-5137498(+) (11)	NA	Q08632	Short-chain type dehydrogenase/reductase	AT3G03980.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g31780.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	AC233662_57.1	Short-chain dehydrogenase/reductase SDR AC233662.1 262132-261094 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.97745.1.S1_s_at	A	A1TS	POPTR_0014s15880	POPTR_0014s15880 (11)	scaffold_14:11964460-11965062(-) (11)	NA	Q8L633	"Ribonuclease Z, chloroplastic"	AT2G04530.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os09g30466.1	"nuclear ribonuclease Z, putative, expressed"	Medtr5g092020.1	"Nuclear ribonuclease Z, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97755.1.S1_at	A	A1TS	POPTR_0014s10850	POPTR_0014s10850 (11)	scaffold_14:8100352-8102311(+) (11)	NA	NA	NA	AT3G62140.1	"CONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). "	LOC_Os01g21860.1	"AGAP010768-PA, putative, expressed"	Medtr7g134050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97764.1.S1_at	A	A1TS	POPTR_0002s24200	POPTR_0002s24200 (9)	scaffold_2:21620827-21623118(-) (9)	NA	Q9MAS5	Putative vesicle-associated membrane protein 726	AT1G04760.1	vesicle-associated membrane protein 726 	LOC_Os07g09600.1	"vesicle-associated membrane protein, putative, expressed"	Medtr4g023810.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.97783.1.S1_at	A	A1TS	POPTR_0012s09710	POPTR_0012s09710 (11)	scaffold_12:10662660-10663709(+) (11)	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
PtpAffx.97840.1.S1_at	A	A1TS	POPTR_0003s12700	POPTR_0003s12700 (11)	scaffold_3:13212205-13213330(-) (11)	NA	O22493	"Glutamate--cysteine ligase, chloroplastic"	AT4G23100.3	glutamate-cysteine ligase 	LOC_Os05g03820.3	"glutamate--cysteine ligase, chloroplast precursor, putative, expressed"	Medtr4g149470.1	"Glutamate--cysteine ligase, plant "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process	GO:0004357|glutamate-cysteine ligase activity	NA
PtpAffx.97872.1.A1_at	A	A1TS	POPTR_0014s15200	POPTR_0014s15200 (11)	scaffold_14:11307653-11308146(+) (11)	NA	A8MRC7	"Probable beta-1,3-galactosyltransferase 2"	AT1G05170.2	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.9788.1.A1_at	A	A1TS	POPTR_0003s14140	POPTR_0003s14140 (9)	scaffold_3:14292279-14293124(+) (9)	NA	O59729	Uncharacterized protein slp1	AT4G23950.1	Galactose-binding protein 	LOC_Os01g65520.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr4g032100.2	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9791.1.S1_at	A	A1TS	POPTR_0015s06560	POPTR_0015s06560 (11)	scaffold_15:7502662-7504618(-) (11)	NA	Q8GWW7	Agmatine deiminase	AT5G08170.1	porphyromonas-type peptidyl-arginine deiminase family protein 	LOC_Os04g39210.1	"agmatine deiminase, putative, expressed"	Medtr8g115390.1	Porphyromonas-type peptidyl-arginine deiminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9792.1.S1_s_at	A	A1TS	POPTR_0001s31160	POPTR_0001s31160 (11)	scaffold_1:29500768-29501762(+) (11)	NA	P42731	Polyadenylate-binding protein 2	AT1G49760.2	poly(A) binding protein 8 	LOC_Os04g42600.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
PtpAffx.97934.1.A1_at	A	A1TS	POPTR_0007s14510	POPTR_0007s14510 (11)	scaffold_7:14279806-14280600(-) (11)	NA	P19446	"Malate dehydrogenase, glyoxysomal"	AT2G22780.1	peroxisomal NAD-malate dehydrogenase 1 	LOC_Os12g43630.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.97935.1.A1_at	A	A1TS	POPTR_0006s29310	POPTR_0006s29310 (11)	scaffold_6:26718239-26720397(-) (11)	NA	Q9NQQ7	Solute carrier family 35 member C2	AT1G06470.2	Nucleotide/sugar transporter family protein 	LOC_Os06g05980.1	"transporter family protein, putative, expressed"	AC235757_47.1	Protein of unknown function DUF250 AC235757.1 195727-188867 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.9794.1.S1_at	A	A1TS	POPTR_0004s05600	POPTR_0004s05600 (9)	scaffold_4:4327564-4327846(-) (9)	NA	Q9LP46	Protein SCAR3	AT1G29170.1	SCAR family protein 	LOC_Os01g11040.1	"SCAR-like protein 2, putative, expressed"	Medtr4g134650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9794.3.S1_at	A	A1TS	POPTR_0011s07381	POPTR_0011s07381 (11)	scaffold_11:8246396-8247865(+) (11)	NA	Q9LP46	Protein SCAR3	AT1G29170.3	SCAR family protein 	LOC_Os01g11040.1	"SCAR-like protein 2, putative, expressed"	Medtr4g134650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97959.1.A1_at	A	A3TS	POPTR_1429s00210	POPTR_1429s00210 (11)//POPTR_0001s31880 (10)//POPTR_0001s31890 (9)	scaffold_1:30260198-30260687(+) (10)//scaffold_1:30287182-30287702(+) (11)//scaffold_1429:4654-5174(-) (11)	NA	Q8RWI9	ABC transporter G family member 15	AT3G21090.1	ABC-2 type transporter family protein 	LOC_Os09g29660.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g120680.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97969.1.S1_at	A	A1TS	POPTR_0002s08250	POPTR_0002s08250 (10)	scaffold_2:5740209-5741407(+) (10)	NA	NA	NA	AT1G21740.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g35070.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97994.1.S1_s_at	A	A1TS	POPTR_0005s18180	POPTR_0005s18180 (11)	scaffold_5:16289853-16291899(-) (11)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT4G36960.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g71770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g017210.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.980.1.S1_at	A	A1TS	POPTR_0005s17450	POPTR_0005s17450 (11)	scaffold_5:14838487-14839355(-) (11)	NA	P19682	"28 kDa ribonucleoprotein, chloroplastic"	AT4G09040.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g37700.3	"RNA recognition motif containing protein, putative, expressed"	Medtr3g150190.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.98008.1.S1_s_at	A	A1TS	POPTR_0003s02320	POPTR_0003s02320 (11)	scaffold_3:2400661-2401681(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98015.1.A1_at	A	A1TS	POPTR_0008s02730	POPTR_0008s02730 (9)	scaffold_8:1381112-1381509(-) (9)	NA	Q3AV98	Uridylate kinase	AT3G10030.1	aspartate/glutamate/uridylate kinase family protein 	LOC_Os04g33300.1	"amino acid kinase, putative, expressed"	Medtr1g073630.1	Aspartate/glutamate/uridylate kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.98036.1.S1_at	A	A1TS	POPTR_0010s23280	POPTR_0010s23280 (11)	scaffold_10:19884907-19885864(-) (11)	NA	P47082	Vacuolar amino acid transporter 1	AT2G39130.1	Transmembrane amino acid transporter family protein 	LOC_Os02g01100.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr1g120430.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9804.1.A1_at	A	A1TS	POPTR_0010s14840	POPTR_0010s14840 (11)	scaffold_10:14318216-14318734(+) (11)	NA	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr5g049410.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.98042.1.S1_at	A	A1TS	POPTR_0004s19430	POPTR_0004s19430 (11)	scaffold_4:19271151-19272170(+) (11)	NA	NA	NA	AT4G38380.1	MATE efflux family protein 	LOC_Os09g37610.1	"MATE efflux protein, putative, expressed"	Medtr5g106650.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.98055.1.S1_at	A	A1TS	POPTR_0001s15740	POPTR_0001s15740 (10)	scaffold_1:12559460-12560805(+) (10)	NA	NA	NA	AT4G17330.1	G2484-1 protein 	LOC_Os10g41030.2	"agenet domain containing protein, putative, expressed"	Medtr5g012830.1	Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.98072.1.S1_at	A	A1TA	POPTR_0005s05690	POPTR_0005s05690 (10)	scaffold_5:3733451-3733991(-) (10)	NA	Q3E8W4	Receptor-like protein kinase ANXUR2	AT5G28680.1	Malectin/receptor-like protein kinase family protein 	LOC_Os05g20150.1	"TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.98083.1.S1_at	A	A1TS	POPTR_0014s11550	POPTR_0014s11550 (9)	scaffold_14:8566542-8566756(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98087.1.A1_at	A	A1TS	POPTR_0004s22110	POPTR_0004s22110 (10)	scaffold_4:21055883-21056760(+) (11)	POPTR_0009s02010 (7)	Q5H9R7	Serine/threonine-protein phosphatase 6 regulatory subunit 3	AT1G07990.1	SIT4 phosphatase-associated family protein 	LOC_Os05g51490.2	"SIT4 phosphatase-associated protein domain containing protein, expressed"	Medtr2g110170.2	SIT4 phosphatase-associated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.981.1.S1_at	A	A1TS	POPTR_0014s06170	POPTR_0014s06170 (11)	scaffold_14:4676773-4677511(-) (11)	NA	Q9SHY6	Putative expansin-B2	AT1G65680.1	expansin B2 	LOC_Os05g15690.1	"expansin precursor, putative, expressed"	Medtr4g036120.1	"Major pollen allergen Lol pI; Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98138.1.S1_at	A	A1MS	POPTR_0016s07350	POPTR_0016s07350 (9)	scaffold_16:5218453-5219768(+) (9)	NA	Q5F477	UPF0554 protein C2orf43 homolog	AT3G11620.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g72870.3	"BAS1, putative, expressed"	AC146630_6.1	"Lipase, active site AC146630.25 17675-25469 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98138.2.S1_s_at	A	A1TS	POPTR_0016s07350	POPTR_0016s07350 (11)	scaffold_16:5216753-5219718(+) (11)	NA	Q5F477	UPF0554 protein C2orf43 homolog	AT3G11620.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g72870.3	"BAS1, putative, expressed"	AC146630_6.1	"Lipase, active site AC146630.25 17675-25469 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9815.1.A1_at	A	A1TS	POPTR_0004s01400	POPTR_0004s01400 (10)	scaffold_4:775245-775723(-) (10)	NA	NA	NA	AT4G04630.1	"Protein of unknown function, DUF584 "	LOC_Os04g43990.1	"DUF584 domain containing protein, putative, expressed"	Medtr3g068920.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9817.1.A1_at	A	A1TS	POPTR_0006s15750	POPTR_0006s15750 (11)	scaffold_6:13418136-13418644(+) (11)	NA	Q9LHF1	Leucine-rich repeat extensin-like protein 4	AT4G29240.1	Leucine-rich repeat (LRR) family protein 	LOC_Os05g09640.1	"uncharacterized protein At4g06744 precursor, putative"	Medtr6g093990.1	"Uncharacterized protein At4g06744 precursor, related "	NA	GO:0005515|protein binding	NA
PtpAffx.98197.1.S1_s_at	A	A1TS	POPTR_0013s04220	POPTR_0013s04220 (11)	scaffold_13:2809751-2810009(+) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr2g088220.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.982.1.A1_at	A	A1TS	POPTR_0001s36260	POPTR_0001s36260 (11)	scaffold_1:34798044-34798515(+) (11)	NA	NA	NA	AT3G27350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40700.1); Has 230 Blast hits to 202 proteins in 35 species: Archae - 0; Bacteria - 3; Metazoa - 77; Fungi - 4; Plants - 130; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr3g103000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98201.2.A1_a_at	A	A1TS	POPTR_0007s04590	POPTR_0007s04590 (10)	scaffold_7:2845866-2846085(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98207.1.S1_at	A	A1TS	POPTR_0005s12910	POPTR_0005s12910 (10)	scaffold_5:9746133-9746638(+) (10)	NA	Q09463	RING finger protein 5	AT2G23780.1	RING/U-box superfamily protein 	LOC_Os12g43930.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9825.1.S1_at	A	A1TS	POPTR_0019s03520	POPTR_0019s03520 (11)	scaffold_19:3606958-3607440(+) (11)	NA	P92948	Cell division cycle 5-like protein	AT1G09770.1	cell division cycle 5 	LOC_Os04g28090.1	"MYB family transcription factor, putative, expressed"	Medtr5g010630.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9828.1.S1_at	A	A1TS	POPTR_0006s23600	POPTR_0006s23600 (11)	scaffold_6:22312041-22314812(+) (11)	NA	B2JQW2	2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	AT4G33180.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g42140.1	"hydrolase protein, putative, expressed"	Medtr3g139140.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98280.1.S1_at	A	A1TS	POPTR_0017s11200	POPTR_0017s11200 (11)	scaffold_17:10922340-10922590(-) (11)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.98284.1.S1_at	A	A1TS	POPTR_0005s00590	POPTR_0005s00590 (10)	scaffold_5:240712-241046(+) (10)	NA	Q40392	TMV resistance protein N	AT1G27170.1	transmembrane receptors;ATP binding 	LOC_Os07g37950.2	expressed protein	Medtr3g109800.1	TIR 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.9829.1.S1_at	A	A1TS	POPTR_0001s01970	POPTR_0001s01970 (11)	scaffold_1:1433896-1436028(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g46956.2	expressed protein	Medtr5g029180.1	Survival motor neuron 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.983.1.A1_at	A	A1TS	POPTR_0012s02910	POPTR_0012s02910 (11)	scaffold_12:2362084-2364297(+) (11)	NA	NA	NA	AT5G64180.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g31790.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98357.1.S1_at	A	A1TS	POPTR_0002s10430	POPTR_0002s10430 (11)	scaffold_2:7522390-7524367(+) (11)	NA	NA	NA	AT4G24610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). 	LOC_Os02g52280.1	expressed protein	Medtr5g074970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98360.1.S1_at	A	A1TS	POPTR_0005s10750	POPTR_0005s10750 (11)	scaffold_5:7711812-7712373(-) (11)	NA	Q3EBZ2	F-box protein SKIP23	AT2G17030.1	F-box family protein with a domain of unknown function (DUF295) 	NA	NA	Medtr8g088880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98384.1.S1_at	A	A1TS	POPTR_0003s17670	POPTR_0003s17670 (9)	scaffold_3:16968082-16972331(+) (9)	NA	Q43621	"Glutathione reductase, cytosolic"	AT3G24170.3	glutathione-disulfide reductase 	LOC_Os02g56850.3	"glutathione reductase, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
PtpAffx.98393.1.S1_at	A	A1TS	POPTR_0005s19520	POPTR_0005s19520 (11)	scaffold_5:18380658-18381600(-) (11)	NA	Q2KII6	Neuroguidin	AT1G07840.1	Sas10/Utp3/C1D family 	LOC_Os01g68310.1	sas10/Utp3 family protein	Medtr3g149980.1	"Neuroguidin, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98398.1.A1_s_at	A	A1TS	POPTR_0011s13810	POPTR_0011s13810 (11)	scaffold_11:16451106-16451347(+) (11)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.1	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.984.1.S1_at	A	A1TS	POPTR_0010s02500	POPTR_0010s02500 (11)	scaffold_10:2932888-2933386(+) (11)	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g27190.1	"C2 domain containing protein, putative, expressed"	Medtr8g138850.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98411.1.S1_at	A	A1TS	POPTR_0001s18820	POPTR_0001s18820 (11)	scaffold_1:16007630-16008959(-) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT1G79800.1	early nodulin-like protein 7 	LOC_Os06g17730.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr2g122360.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.98425.1.S1_at	A	A1TS	POPTR_0012s12850	POPTR_0012s12850 (10)	scaffold_12:13237798-13238321(+) (10)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT4G25640.1	detoxifying efflux carrier 35 	LOC_Os08g44870.1	"MATE efflux family protein, putative, expressed"	Medtr1g126620.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.98462.1.S1_s_at	A	A1TS	POPTR_0005s27560	POPTR_0005s27560 (11)	scaffold_5:25164061-25164625(-) (11)	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98470.1.S1_s_at	A	A2TS	POPTR_0001s45360	POPTR_0001s45360 (11)//POPTR_0011s15540 (11)	scaffold_1:45855020-45855939(-) (11)//scaffold_11:17635650-17636659(+) (11)	NA	Q43784	"Granule-bound starch synthase 1, chloroplastic/amyloplastic"	AT1G32900.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g22930.3	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.98474.1.S1_s_at	A	A1TS	POPTR_0004s00410	POPTR_0004s00410 (11)	scaffold_4:126789-127465(-) (11)	NA	Q8GYN5	RPM1-interacting protein 4	AT3G25070.1	RPM1 interacting protein 4 	LOC_Os03g63140.2	"nitrate-induced NOI protein, expressed"	Medtr2g029230.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98475.1.A1_at	A	A1MS	POPTR_0019s11700	POPTR_0019s11700 (11)	scaffold_19:12948032-12948327(-) (11)	NA	Q5XH16	NHP2-like protein 1	AT4G12600.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os03g13800.1	"ribosomal protein L7Ae, putative, expressed"	Medtr8g119890.1	Ribosomal protein L7AE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98478.1.S1_s_at	A	A1TS	POPTR_0001s22010	POPTR_0001s22010 (11)	scaffold_1:20614082-20616215(-) (11)	NA	Q96JG6	Coiled-coil domain-containing protein 132	AT2G27900.2	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os10g39910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9848.1.A1_a_at	A	A1TS	POPTR_0002s04490	POPTR_0002s04490 (11)	scaffold_2:2804529-2809006(+) (11)	NA	Q9C889	PRA1 family protein F2	AT1G55190.1	PRA1 (Prenylated rab acceptor) family protein 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98487.1.S1_s_at	A	A1TS	POPTR_0016s00360	POPTR_0016s00360 (11)	scaffold_16:76379-76817(-) (11)	NA	Q93ZX7	Probable galacturonosyltransferase 4	AT5G47780.1	galacturonosyltransferase 4 	LOC_Os08g23780.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g033340.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.98539.1.S1_s_at	A	A1TS	POPTR_0001s22130	POPTR_0001s22130 (11)	scaffold_1:20772881-20773216(+) (11)	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.3	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98557.1.S1_at	A	A1MS	POPTR_0007s05050	POPTR_0007s05050 (9)	scaffold_7:3252967-3253453(+) (9)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.98559.1.S1_at	A	A1TS	POPTR_0002s06550	POPTR_0002s06550 (10)	scaffold_2:4367307-4368431(+) (10)	NA	NA	NA	AT1G22790.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g40700.1	expressed protein	Medtr1g124750.1	"T22J18.4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98587.1.S1_at	A	A1TS	POPTR_0004s12170	POPTR_0004s12170 (11)	scaffold_4:11116841-11117123(+) (11)	NA	Q93Z27	Probable calcium-binding protein CML45	AT5G39670.1	Calcium-binding EF-hand family protein 	LOC_Os11g38780.1	"EF hand family protein, putative"	Medtr5g025740.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98587.2.S1_at	A	A1TS	POPTR_0017s12100	POPTR_0017s12100 (11)	scaffold_17:12256031-12256413(+) (11)	NA	Q93Z27	Probable calcium-binding protein CML45	AT5G39670.1	Calcium-binding EF-hand family protein 	LOC_Os11g38780.1	"EF hand family protein, putative"	Medtr5g025740.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98597.1.S1_at	A	A1TS	POPTR_0001s08100	POPTR_0001s08100 (11)	scaffold_1:6169088-6170725(+) (11)	NA	Q9XJ36	"ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic"	AT1G12410.1	CLP protease proteolytic subunit 2 	LOC_Os06g04530.1	"OsClp9 - Putative Clp protease homologue, expressed"	Medtr8g106600.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.986.1.A1_at	A	A1TS	POPTR_0010s18660	POPTR_0010s18660 (11)	scaffold_10:16843138-16843702(-) (11)	POPTR_0002s21010 (8)	P22337	"Acyl-[acyl-carrier-protein] desaturase, chloroplastic"	AT3G02630.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os01g69080.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr5g024070.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0045300|acyl-[acyl-carrier-protein] desaturase activity	NA
PtpAffx.98616.1.S1_at	A	A1MS	POPTR_0001s23800	POPTR_0001s23800 (9)	scaffold_1:23200191-23200623(-) (9)	NA	NA	NA	AT2G31945.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os09g27410.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98636.1.S1_at	A	A1TS	POPTR_0003s05490	POPTR_0003s05490 (9)	scaffold_3:6766138-6766589(-) (9)	NA	Q9LW86	Probable sulfate transporter 3.4	AT3G15990.1	sulfate transporter 3;4 	LOC_Os06g05160.1	"sulfate transporter, putative, expressed"	AC234703_12.1	Sulphate anion transporter AC234703.1 74838-69482 E EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.98662.1.S1_at	A	A1TS	POPTR_0007s04180	POPTR_0007s04180 (11)	scaffold_7:2519987-2520385(+) (11)	NA	NA	NA	AT5G44860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os08g01590.2	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98695.1.S1_at	A	A1TS	POPTR_0006s22220	POPTR_0006s22220 (11)	scaffold_6:21265834-21266718(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g33320.3	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.98695.1.S1_s_at	A	A1TS	POPTR_0006s22220	POPTR_0006s22220 (11)	scaffold_6:21266715-21266935(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g33320.3	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.98699.1.S1_at	A	A1TS	POPTR_0014s10890	POPTR_0014s10890 (10)	scaffold_14:8132427-8132924(-) (10)	NA	Q9M6E2	10-deacetylbaccatin III 10-O-acetyltransferase	AT3G62160.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g18744.1	"transferase family protein, putative, expressed"	Medtr7g134040.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.98699.2.S1_a_at	A	A1TS	POPTR_0014s10890	POPTR_0014s10890 (11)	scaffold_14:8133157-8133679(-) (11)	NA	Q9M6E2	10-deacetylbaccatin III 10-O-acetyltransferase	AT3G62160.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g18744.1	"transferase family protein, putative, expressed"	Medtr7g134040.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.987.3.S1_at	A	A1TS	POPTR_0016s13890	POPTR_0016s13890 (11)	scaffold_16:13116694-13117451(+) (11)	NA	Q9LZX1	Protein LURP-one-related 15	AT5G01750.1	Protein of unknown function (DUF567) 	LOC_Os07g12730.1	"DUF567 domain containing protein, putative, expressed"	Medtr7g077600.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.987.4.S1_a_at	A	A2TS	POPTR_1048s00200	POPTR_1048s00200 (11)//POPTR_0016s13930 (10)	scaffold_1048:3302-3850(-) (11)//scaffold_16:13156334-13156859(+) (10)	NA	Q9LZX1	Protein LURP-one-related 15	AT5G01750.2	Protein of unknown function (DUF567) 	LOC_Os07g12730.1	"DUF567 domain containing protein, putative, expressed"	Medtr7g077600.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98729.1.S1_s_at	A	A1MS	POPTR_0003s21680	POPTR_0003s21680 (11)	scaffold_3:19737006-19737476(-) (11)	NA	NA	NA	AT5G19900.1	"PRLI-interacting factor, putative "	LOC_Os02g58570.1	"PRLI-interacting factor A, putative, expressed"	Medtr1g146630.1	"PRLI-interacting factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9873.1.S1_at	A	A1TS	POPTR_0006s19390	POPTR_0006s19390 (11)	scaffold_6:18455005-18455066(-) (11)	NA	NA	NA	AT4G30845.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g11250.1	expressed protein	Medtr8g144700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9873.1.S1_s_at	A	A1TS	POPTR_0006s19390	POPTR_0006s19390 (11)	scaffold_6:18455096-18455460(-) (11)	NA	NA	NA	AT4G30845.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g11250.1	expressed protein	Medtr8g144700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9876.3.S1_s_at	A	A1TS	POPTR_0018s04600	POPTR_0018s04600 (11)	scaffold_18:3870511-3871390(-) (11)	NA	P0A9H7	Cyclopropane-fatty-acyl-phospholipid synthase	AT4G33110.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g37610.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr3g139610.2	Methyltransferase type 11 	GO:0008610|lipid biosynthetic process	GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
PtpAffx.98782.2.S1_a_at	A	A1TS	POPTR_0006s03170	POPTR_0006s03170 (9)	scaffold_6:1999520-2000441(+) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.1	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.98797.1.S1_at	A	A1TS	POPTR_0008s02940	POPTR_0008s02940 (11)	scaffold_8:1522663-1523947(+) (11)	NA	NA	NA	AT5G04480.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os10g39900.1	"glycosyltransferase family protein 1, putative, expressed"	NA	NA	GO:0009058|biosynthetic process	NA	NA
PtpAffx.988.1.A1_at	A	A1TS	POPTR_0018s02520	POPTR_0018s02520 (10)	scaffold_18:2311751-2312954(+) (10)	NA	P42738	"Chorismate mutase, chloroplastic"	AT5G10870.1	chorismate mutase 2 	LOC_Os02g08410.1	"chorismate mutase, chloroplast precursor, putative, expressed"	Medtr1g016760.1	Chorismate mutase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004106|chorismate mutase activity	NA
PtpAffx.98801.1.S1_at	A	A1TS	POPTR_0001s45720	POPTR_0001s45720 (10)	scaffold_1:46272642-46273136(+) (10)	NA	NA	NA	AT1G63310.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98809.1.S1_at	A	A1TS	POPTR_0012s06780	POPTR_0012s06780 (9)	scaffold_12:7264502-7264952(-) (9)	NA	Q39017	Diacylglycerol kinase 1	AT5G07920.1	diacylglycerol kinase1 	LOC_Os03g31180.1	"diacylglycerol kinase 1, putative, expressed"	Medtr4g144130.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region; Protein kinase C, phorbol ester/diacylglycerol binding "	GO:0023033|signaling pathway||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.98818.1.A1_s_at	A	A1TS	POPTR_0002s20710	POPTR_0002s20710 (11)	scaffold_2:16814651-16815160(+) (11)	NA	Q54QU5	WD repeat-containing protein 89 homolog	AT2G47790.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g19590.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g068400.1	"WD repeat-containing protein 89 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98826.1.S1_s_at	A	A1TS	POPTR_0005s26260	POPTR_0005s26260 (11)	scaffold_5:24326728-24327632(-) (11)	NA	P35016	Endoplasmin homolog	AT4G24190.1	Chaperone protein htpG family protein 	LOC_Os06g50300.1	"heat shock protein, putative, expressed"	Medtr1g031360.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.98849.1.S1_at	A	A1TS	POPTR_0003s12680	POPTR_0003s12680 (10)	scaffold_3:13196126-13196538(+) (10)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT1G63500.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98849.1.S1_s_at	A	A2TS	POPTR_0001s09320	POPTR_0001s09320 (11)//POPTR_0003s12680 (11)	scaffold_1:7116125-7117041(+) (11)//scaffold_3:13196289-13197250(+) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT1G63500.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g04050.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98854.1.S1_at	A	A1TS	POPTR_0010s26020	POPTR_0010s26020 (10)	scaffold_10:21416061-21416385(+) (10)	NA	Q00416	Helicase SEN1	AT1G16800.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g32180.1	conserved hypothetical protein	Medtr8g024410.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9887.1.A1_at	A	A2TS	POPTR_0017s04550	POPTR_0017s04550 (11)//POPTR_0017s04570 (10)	scaffold_17:3509130-3509450(+) (11)//scaffold_17:3520570-3520812(+) (10)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G36160.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.9887.2.S1_s_at	A	A3TS	POPTR_0017s04550	POPTR_0017s04570 (11)//POPTR_0017s04550 (11)//POPTR_0017s04560 (11)	scaffold_17:3508375-3509324(+) (11)//scaffold_17:3509185-3515901(+) (11)//scaffold_17:3515762-3520764(+) (11)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G36160.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.9887.3.S1_s_at	A	A3TS	POPTR_0017s04550	POPTR_0017s04570 (11)//POPTR_0017s04550 (11)//POPTR_0017s04560 (11)	scaffold_17:3506961-3507476(+) (11)//scaffold_17:3513708-3514223(+) (11)//scaffold_17:3518402-3518917(+) (11)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G36160.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.98872.1.S1_at	A	A1TS	POPTR_0013s07340	POPTR_0013s07340 (10)	scaffold_13:6124949-6125676(+) (11)	NA	Q9LF50	"Maltose excess protein 1, chloroplastic"	AT5G17520.1	root cap 1 (RCP1) 	LOC_Os04g51330.1	"maltose excess protein 1-like, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9888.2.A1_a_at	A	A1TS	POPTR_0011s02760	POPTR_0011s02760 (11)	scaffold_11:2693780-2694128(+) (11)	NA	Q8H124	"Uncharacterized protein At2g34460, chloroplastic"	AT2G34460.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g25439.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr8g121780.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98884.1.S1_at	A	A1TS	POPTR_0013s04950	POPTR_0013s04950 (11)	scaffold_13:3467017-3469837(+) (11)	NA	NA	NA	AT1G08530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g24240.1	expressed protein	Medtr4g107840.1	"T27G7.21, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.989.1.A1_at	A	A1TS	POPTR_0010s05850	POPTR_0010s05850 (11)	scaffold_10:7304457-7304818(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G26370.1	O-fucosyltransferase family protein 	LOC_Os02g06400.1	"growth regulator related protein, putative, expressed"	Medtr3g102440.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9890.1.S1_at	A	A1TS	POPTR_0296s00210	POPTR_0296s00210 (11)	scaffold_15:12647063-12648615(-) (11)//scaffold_296:10724-12302(-) (11)	POPTR_0015s12380 (7)	O80513	Cyclin-U4-1	AT2G44740.1	cyclin p4;1 	LOC_Os10g41430.1	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98904.1.S1_s_at	A	A1TS	POPTR_0001s37780	POPTR_0001s37780 (11)	scaffold_1:36871070-36871318(+) (11)	NA	Q9C9N6	Protein PLASTID MOVEMENT IMPAIRED 2	AT5G55860.1	Plant protein of unknown function (DUF827) 	LOC_Os12g17310.1	"prefoldin, putative, expressed"	Medtr3g079810.1	I/LWEQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98933.1.S1_at	A	A1TA	POPTR_0009s08270	POPTR_0009s08270 (9)	scaffold_9:7616991-7617514(-) (9)	NA	Q6EP49	MADS-box transcription factor 27	AT4G37940.1	AGAMOUS-like 21 	LOC_Os02g36924.1	"OsMADS27 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g075960.1	"Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.9895.1.A1_at	A	A1TS	POPTR_0010s18710	POPTR_0010s18710 (11)	scaffold_10:16868053-16868308(-) (9)//scaffold_10:16879580-16879843(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G65450.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr7g099800.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.98957.1.S1_s_at	A	A1TS	POPTR_0006s22480	POPTR_0006s22480 (11)	scaffold_6:21489562-21489911(-) (11)	NA	NA	NA	AT3G11560.4	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98978.1.S1_at	A	A1TS	POPTR_0010s11960	POPTR_0010s11960 (10)	scaffold_10:12085652-12085870(+) (10)	NA	O49298	Probable pectinesterase/pectinesterase inhibitor 6	AT1G23200.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr3g040380.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.98987.1.S1_s_at	A	A1TS	POPTR_0008s08480	POPTR_0008s08480 (11)	scaffold_8:5258002-5258482(-) (11)	NA	NA	NA	AT3G19870.1	unknown protein; Has 84 Blast hits to 64 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). 	LOC_Os02g58250.1	expressed protein	Medtr4g101310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98989.1.S1_a_at	A	A2TS	POPTR_0016s07090	POPTR_0016s07090 (11)//POPTR_0006s21970 (10)	scaffold_16:4939212-4939386(-) (11)//scaffold_6:20978827-20979001(-) (10)	NA	Q6DW74	"Digalactosyldiacylglycerol synthase 1, chloroplastic"	AT3G11670.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g34000.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr7g084010.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.98989.1.S1_at	A	A1MS	POPTR_0006s21970	POPTR_0006s21970 (10)	scaffold_6:20978917-20979366(-) (10)	NA	Q6DW74	"Digalactosyldiacylglycerol synthase 1, chloroplastic"	AT3G11670.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g34000.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr7g084010.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.98989.2.S1_a_at	A	A2TS	POPTR_0016s07090	POPTR_0016s07090 (11)//POPTR_0006s21970 (10)	scaffold_16:4939175-4939386(-) (11)//scaffold_6:20978790-20979001(-) (10)	NA	Q6DW74	"Digalactosyldiacylglycerol synthase 1, chloroplastic"	AT3G11670.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g34000.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr7g084010.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.98990.1.S1_at	A	A1TS	POPTR_0012s07040	POPTR_0012s07040 (11)	scaffold_12:7688174-7689342(+) (11)	NA	NA	NA	AT1G18730.3	NDH dependent flow 6 	LOC_Os02g51020.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.990.1.S1_at	A	A1TS	POPTR_1613s00200	POPTR_1613s00200 (11)	scaffold_1613:3059-3691(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99026.1.S1_at	A	A1TS	POPTR_0001s28540	POPTR_0001s28540 (11)	scaffold_1:27338897-27339491(+) (11)	POPTR_0009s07740 (8)	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
PtpAffx.99089.1.S1_at	A	A1TS	POPTR_0001s40330	POPTR_0001s40330 (10)	scaffold_1:39714784-39719483(-) (10)	NA	NA	NA	AT3G14980.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os04g59510.1	"PHD finger family protein, putative, expressed"	Medtr5g079640.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.991.1.A1_at	A	A1MS	POPTR_0001s06690	POPTR_0001s06690 (11)	scaffold_1:5133089-5133469(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g106900.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99107.1.S1_s_at	A	A1TS	POPTR_0012s11850	POPTR_0012s11850 (11)	scaffold_12:12220077-12220195(+) (11)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr5g084520.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.99107.3.A1_s_at	A	A1TS	POPTR_0012s11850	POPTR_0012s11850 (11)	scaffold_12:12216003-12219670(+) (11)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr5g084520.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.9911.1.S1_at	A	A1TS	POPTR_0001s18760	POPTR_0001s18760 (10)	scaffold_1:15902531-15902628(+) (10)	NA	Q9C5H4	VHS domain-containing protein At3g16270	AT3G16270.1	ENTH/VHS family protein 	LOC_Os01g13160.1	expressed protein	Medtr8g015210.1	VHS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99112.1.A1_s_at	A	A1TS	POPTR_0006s02270	POPTR_0006s02270 (11)	scaffold_6:1486745-1486865(-) (11)	NA	NA	NA	AT3G22270.1	Topoisomerase II-associated protein PAT1 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99113.1.S1_s_at	A	A1TS	POPTR_0009s15590	POPTR_0009s15590 (11)	scaffold_9:12024738-12025419(+) (11)	NA	Q23892	Lysosomal beta glucosidase	AT5G20950.2	Glycosyl hydrolase family protein 	LOC_Os03g53800.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.99119.1.S1_at	A	A1TS	POPTR_0006s18890	POPTR_0006s18890 (11)	scaffold_6:17633752-17634704(-) (11)	NA	O08560	Diacylglycerol kinase zeta	AT4G30340.1	diacylglycerol kinase 7 	LOC_Os02g54650.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.99121.1.S1_s_at	A	A2TS	POPTR_0539s00210	POPTR_0539s00210 (11)//POPTR_0019s08400 (10)	scaffold_19:9930529-9930978(-) (10)//scaffold_539:10523-11016(-) (11)	NA	Q9BTE3	UPF0557 protein C10orf119	AT2G40550.1	E2F target gene 1 	LOC_Os01g07260.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99142.1.S1_at	A	A1MS	POPTR_0019s01140	POPTR_0019s01140 (9)	scaffold_19:867145-867461(+) (9)	NA	Q8L751	Oxysterol-binding protein-related protein 1C	AT4G08180.1	OSBP(oxysterol binding protein)-related protein 1C 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.99155.1.S1_at	A	A1TS	POPTR_0008s23240	POPTR_0008s23240 (11)	scaffold_8:18557416-18558026(-) (11)	NA	Q9LRZ5	Phospholipase D p1	AT3G16785.1	phospholipase D P1 	LOC_Os05g29050.2	"phospholipase D p1, putative, expressed"	Medtr1g100110.1	Phospholipase D/Transphosphatidylase; Pleckstrin homology-type 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.99162.1.S1_at	A	A1TS	POPTR_0001s47250	POPTR_0001s47250 (9)	scaffold_1:47509667-47510509(+) (9)	NA	NA	NA	AT4G05030.1	Copper transport protein family 	LOC_Os02g37280.1	"heavy metal transport/detoxification protein, putative"	Medtr2g033170.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.99175.1.S1_at	A	A1TS	POPTR_0010s13860	POPTR_0010s13860 (10)	scaffold_10:13572636-13573153(-) (10)	NA	Q31QE7	ATP-dependent Clp protease adapter protein ClpS	AT1G68660.1	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 	LOC_Os08g33540.1	"ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed"	Medtr5g068520.1	ATP-dependent Clp protease adaptor protein ClpS 	GO:0030163|protein catabolic process||GO:0009057|macromolecule catabolic process	NA	NA
PtpAffx.992.1.A1_at	A	A1TS	POPTR_0001s09150	POPTR_0001s09150 (10)	scaffold_1:7015288-7015581(+) (10)	NA	Q9SH27	Protein LURP-one-related 4	AT1G63410.1	Protein of unknown function (DUF567) 	LOC_Os07g47540.1	"DUF567 domain containing protein, putative, expressed"	Medtr4g149680.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9921.1.A1_a_at	A	A1TS	POPTR_0015s07520	POPTR_0015s07520 (11)	scaffold_15:8809665-8809777(-) (11)	NA	P42745	Ubiquitin-conjugating enzyme E2 2	AT2G02760.1	ubiquiting-conjugating enzyme 2 	LOC_Os07g07240.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g112640.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.9921.3.A1_a_at	A	A2TS	POPTR_0006s03790	POPTR_0006s03790 (11)//POPTR_0016s03540 (11)	scaffold_16:1898883-1898948(+) (11)//scaffold_6:2542512-2542577(-) (11)	NA	Q9C977	"Pentatricopeptide repeat-containing protein At1g80270, mitochondrial"	AT1G80270.3	PENTATRICOPEPTIDE REPEAT 596 	LOC_Os12g07260.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g106790.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9921.3.A1_at	A	A1TS	POPTR_0016s03540	POPTR_0016s03540 (11)	scaffold_16:1898817-1899277(+) (11)	NA	Q9C977	"Pentatricopeptide repeat-containing protein At1g80270, mitochondrial"	AT1G80270.3	PENTATRICOPEPTIDE REPEAT 596 	LOC_Os12g07260.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g106790.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9921.4.A1_a_at	A	A1TS	POPTR_0006s03790	POPTR_0006s03790 (11)	scaffold_6:2542156-2542612(-) (11)	NA	Q9C977	"Pentatricopeptide repeat-containing protein At1g80270, mitochondrial"	AT1G80270.3	PENTATRICOPEPTIDE REPEAT 596 	LOC_Os12g07260.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g106790.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9921.5.A1_a_at	A	A1TS	POPTR_0006s03790	POPTR_0006s03790 (11)	scaffold_6:2542217-2542414(-) (11)	NA	Q9C977	"Pentatricopeptide repeat-containing protein At1g80270, mitochondrial"	AT1G80270.3	PENTATRICOPEPTIDE REPEAT 596 	LOC_Os12g07260.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g106790.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9921.6.A1_s_at	A	A1TS	POPTR_0015s07520	POPTR_0015s07520 (11)	scaffold_15:8809655-8813419(-) (11)	NA	P42745	Ubiquitin-conjugating enzyme E2 2	AT2G02760.1	ubiquiting-conjugating enzyme 2 	LOC_Os07g07240.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g112640.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.99255.1.S1_s_at	A	A1TS	POPTR_0013s13210	POPTR_0013s13210 (11)	scaffold_13:13769514-13771948(+) (11)	NA	Q7Z9H9	Uncharacterized protein C1093.03	AT3G59770.1	sacI homology domain-containing protein / WW domain-containing protein 	LOC_Os01g25330.3	"SAC9, putative, expressed"	Medtr4g128320.1	"WW/Rsp5/WWP; Synaptojanin, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.993.1.S1_at	A	A1TS	POPTR_0002s25930	POPTR_0002s25930 (11)	scaffold_2:22939556-22939830(+) (11)	NA	P49690	60S ribosomal protein L23	AT3G04400.1	Ribosomal protein L14p/L23e family protein 	LOC_Os10g32920.1	"ribosomal protein, putative, expressed"	Medtr7g116740.1	Ribosomal protein L14b/L23e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.993.2.S1_s_at	A	A3TS	POPTR_0008s17110	POPTR_0008s17110 (11)//POPTR_0010s07690 (11)//POPTR_1243s00200 (11)	scaffold_10:8691222-8691281(+) (11)//scaffold_1243:1945-2004(+) (11)//scaffold_8:11495362-11495421(-) (11)	NA	P49690	60S ribosomal protein L23	AT3G04400.1	Ribosomal protein L14p/L23e family protein 	LOC_Os10g32920.1	"ribosomal protein, putative, expressed"	Medtr7g116740.1	Ribosomal protein L14b/L23e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.993.4.S1_a_at	A	A1TS	POPTR_0002s25930	POPTR_0002s25930 (11)	scaffold_2:22938107-22938622(+) (11)	NA	P49690	60S ribosomal protein L23	AT3G04400.1	Ribosomal protein L14p/L23e family protein 	LOC_Os10g32920.1	"ribosomal protein, putative, expressed"	Medtr7g116740.1	Ribosomal protein L14b/L23e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.993.5.A1_at	A	A1MA	POPTR_0003s15810	POPTR_0003s15810 (11)	scaffold_3:15514920-15515289(-) (11)	POPTR_0001s12650 (6)	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G47910.1	respiratory burst oxidase homologue D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.99317.1.S1_at	A	A1TS	POPTR_0002s12050	POPTR_0002s12050 (10)	scaffold_2:8961252-8961711(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr6g009290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9932.1.S1_at	A	A1TS	POPTR_0003s07040	POPTR_0003s07040 (11)	scaffold_3:8651044-8651352(-) (11)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.9932.2.A1_a_at	A	A1TS	POPTR_0003s07040	POPTR_0003s07040 (11)	scaffold_3:8651531-8651680(-) (11)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.9932.2.A1_s_at	A	A2TS	POPTR_0001s16250	POPTR_0214s00200 (11)//POPTR_0001s16250 (11)	scaffold_1:13070312-13070525(+) (11)//scaffold_214:9999-10212(+) (11)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.9932.3.S1_a_at	A	A1TS	POPTR_0003s07040	POPTR_0003s07040 (10)	scaffold_3:8653941-8654231(-) (10)	POPTR_0014s00570 (8)	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.99333.2.S1_a_at	A	A3TS	POPTR_0005s00750	POPTR_0005s00770 (11)//POPTR_0013s00660 (11)//POPTR_0005s00750 (11)	scaffold_13:325065-325440(+) (11)//scaffold_5:341066-341398(+) (11)//scaffold_5:349127-349499(+) (11)//scaffold_549:354-729(+) (11)	NA	Q93ZW0	"Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic"	AT1G09420.1	glucose-6-phosphate dehydrogenase 4 	LOC_Os03g20300.2	"glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed"	AC235094_5.1	Glucose-6-phosphate dehydrogenase AC235094.1 27378-26030 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99333.2.S1_at	A	A1TS	POPTR_0013s00660	POPTR_0013s00660 (10)	scaffold_13:324260-325575(+) (10)	NA	Q93ZW0	"Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic"	AT1G09420.1	glucose-6-phosphate dehydrogenase 4 	LOC_Os03g20300.2	"glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed"	Medtr7g022440.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
PtpAffx.99352.1.S1_at	A	A1TS	POPTR_0012s13940	POPTR_0012s13940 (9)	scaffold_12:13927937-13928462(-) (11)	NA	NA	NA	AT5G52060.1	BCL-2-associated athanogene 1 	LOC_Os09g35630.1	"BAG domain-containing protein, putative, expressed"	Medtr1g129370.1	"Ubiquitin; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.99356.1.S1_at	A	A1TS	POPTR_0001s19410	POPTR_0001s19410 (11)	scaffold_1:17066414-17067141(-) (11)	NA	NA	NA	AT4G19160.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99357.1.A1_s_at	A	A1TS	POPTR_0006s06010	POPTR_0006s06010 (11)	scaffold_6:4273438-4273648(-) (11)	NA	NA	NA	AT2G12462.1	BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g55120.1	"jp18, putative, expressed"	Medtr8g122290.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9938.1.A1_at	A	A2TS	POPTR_0397s00200	POPTR_0397s00200 (11)//POPTR_0397s00220 (10)	scaffold_13:5447631-5448094(+) (9)//scaffold_397:2427-2965(-) (11)//scaffold_397:12077-12631(-) (10)	POPTR_0013s06740 (7)	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33430.1	"xyloglucanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99394.1.S1_at	A	A1TS	POPTR_0019s01500	POPTR_0019s01500 (10)	scaffold_19:1310903-1312032(+) (10)	NA	NA	NA	AT4G24290.2	MAC/Perforin domain-containing protein 	LOC_Os07g07194.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr4g144280.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99407.1.S1_at	A	A1TS	POPTR_0001s40980	POPTR_0001s40980 (11)	scaffold_1:40546989-40549521(+) (11)	NA	B9N1F9	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1	AT5G53850.2	haloacid dehalogenase-like hydrolase family protein 	LOC_Os11g29370.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0046872|metal ion binding	NA
PtpAffx.9947.1.A1_at	A	A1TS	POPTR_0015s07950	POPTR_0015s07950 (11)	scaffold_15:9222577-9222622(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os06g37660.1	"OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed"	Medtr8g074360.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.99473.1.S1_a_at	A	A2TS	POPTR_0002s12730	POPTR_0002s12730 (11)//POPTR_0014s02820 (11)	scaffold_14:2346173-2346400(-) (11)//scaffold_2:9481412-9481602(-) (11)	NA	Q42463	"Protein DCL, chloroplastic"	AT1G45230.1	Protein of unknown function (DUF3223) 	LOC_Os02g52744.1	"DCL, chloroplast precursor, putative, expressed"	Medtr3g147730.1	"Protein DCL, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9948.1.S1_at	A	A1TS	POPTR_0004s18120	POPTR_0004s18120 (11)	scaffold_4:18121462-18122570(+) (11)	NA	NA	NA	AT4G35040.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os06g50310.1	"E2F-related protein, putative, expressed"	Medtr4g098490.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.9948.2.S1_a_at	A	A1TS	POPTR_0004s18120	POPTR_0004s18120 (9)	scaffold_4:18120937-18121098(+) (9)	NA	NA	NA	AT4G35040.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os06g50310.1	"E2F-related protein, putative, expressed"	Medtr4g098490.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.99486.1.S1_at	A	A1TS	POPTR_0013s11280	POPTR_0013s11280 (10)	scaffold_13:11944463-11945598(-) (10)	NA	Q4Z8K6	Ran-binding proteins 9/10 homolog	AT1G35470.2	SPla/RYanodine receptor (SPRY) domain-containing protein 	LOC_Os02g35070.1	"SPRY-domain containing protein, putative, expressed"	Medtr4g033600.1	"B302, (SPRY)-like; SPla/RYanodine receptor SPRY; Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9949.1.A1_at	A	A1TS	POPTR_0001s35190	POPTR_0001s35190 (11)	scaffold_1:33482043-33482192(-) (11)	NA	Q9FUZ2	"Peptide deformylase 1B, chloroplastic"	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
PtpAffx.9949.1.A1_s_at	A	A1TS	POPTR_0001s35190	POPTR_0001s35190 (11)	scaffold_1:33481841-33482053(-) (11)	NA	Q9FUZ2	"Peptide deformylase 1B, chloroplastic"	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
PtpAffx.99490.1.S1_at	A	A1TS	POPTR_0001s45520	POPTR_0001s45520 (11)	scaffold_1:46030450-46030878(+) (11)	NA	Q9LXS1	Metal tolerance protein A2	AT3G58810.1	metal tolerance protein A2 	LOC_Os05g03780.1	"cation efflux family protein, putative, expressed"	Medtr2g041270.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.99494.1.S1_at	A	A1TS	POPTR_0017s04490	POPTR_0017s04490 (10)	scaffold_17:3458167-3458706(+) (10)	NA	A8MQA2	Non-specific lipid-transfer protein 13	AT5G44265.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99498.1.S1_s_at	A	A1TS	POPTR_0018s12140	POPTR_0018s12140 (11)	scaffold_18:12715489-12717456(-) (11)	NA	Q9FIJ7	"Probable adenylate kinase 2, chloroplastic"	AT5G35170.1	adenylate kinase family protein 	LOC_Os08g19140.1	"adenylate kinase family protein, putative, expressed"	Medtr4g041640.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.9950.2.A1_s_at	A	A1TS	POPTR_0001s43980	POPTR_0001s43980 (11)	scaffold_1:44420456-44420717(+) (11)	NA	Q64LD2	WD repeat-containing protein 25	AT5G54520.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g21490.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086930.1	"Pre-mRNA-processing factor 17, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99503.1.S1_at	A	A1MS	POPTR_0005s02690	POPTR_0005s02690 (11)	scaffold_5:1714534-1714888(-) (11)	NA	NA	NA	AT5G27650.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g05660.1	"PWWP domain containing protein, expressed"	Medtr7g138980.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99503.1.S1_s_at	A	A1TS	POPTR_0005s02690	POPTR_0005s02690 (11)	scaffold_5:1714482-1714783(-) (11)	NA	NA	NA	AT5G27650.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g05660.1	"PWWP domain containing protein, expressed"	Medtr7g138980.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99505.1.S1_at	A	A1TS	POPTR_0005s26090	POPTR_0005s26090 (11)	scaffold_5:24204328-24205018(-) (11)	NA	NA	NA	AT4G34860.2	Plant neutral invertase family protein 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99518.1.S1_at	A	A1TS	POPTR_0014s17750	POPTR_0014s17750 (10)	scaffold_14:14077279-14077782(+) (10)	NA	Q9LQL2	Nitrate transporter 1.5	AT1G32450.1	nitrate transporter 1.5 	LOC_Os02g48570.1	"peptide transporter PTR2, putative, expressed"	Medtr8g103070.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.9953.1.A1_at	A	A1TS	POPTR_0011s15060	POPTR_0011s15060 (11)	scaffold_11:17243009-17244930(-) (11)	NA	A0PK00	Transmembrane protein 120B	AT4G10430.3	TMPIT-like protein 	LOC_Os02g01720.1	"transmembrane protein 120A, putative, expressed"	Medtr1g146830.1	TMPIT-like 	NA	NA	GO:0016021|integral to membrane
PtpAffx.99531.1.S1_at	A	A1MS	POPTR_0005s11880	POPTR_0005s11880 (9)	scaffold_5:8661494-8662096(-) (9)	NA	Q6S001	Kinesin-related protein 11	AT5G66310.1	ATP binding microtubule motor family protein 	LOC_Os02g43130.1	"kinesin motor domain containing protein, expressed"	Medtr5g021580.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.99539.1.S1_at	A	A1MS	POPTR_0012s07340	POPTR_0012s07340 (9)	scaffold_12:8230936-8231193(+) (9)	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.99567.1.S1_at	A	A1TS	POPTR_0002s15970	POPTR_0002s15970 (10)	scaffold_2:11909401-11910074(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9959.1.A1_at	A	A1TS	POPTR_0018s01760	POPTR_0018s01760 (11)	scaffold_18:1604802-1605232(+) (11)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr3g137090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.996.2.S1_a_at	A	A2TS	POPTR_0002s05640	POPTR_0005s22850 (11)//POPTR_0002s05640 (11)	scaffold_2:3708052-3709047(-) (11)//scaffold_5:21741028-21741733(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT1G06690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os07g05000.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.996.2.S1_at	A	A1TS	POPTR_0002s05640	POPTR_0002s05640 (11)	scaffold_2:3707874-3709080(-) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT1G06690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os07g05000.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.996.3.S1_a_at	A	A1TS	POPTR_0005s22850	POPTR_0005s22850 (11)	scaffold_5:21738983-21740242(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT1G06690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os07g05000.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.996.4.S1_at	A	A1TS	POPTR_0002s05640	POPTR_0002s05640 (11)	scaffold_2:3710730-3710977(-) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT1G06690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os07g05000.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.99611.1.S1_s_at	A	A1TS	POPTR_0013s05620	POPTR_0013s05620 (11)	scaffold_13:4018054-4018349(-) (11)	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT1G64760.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g57880.3	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr6g030630.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.9962.1.S1_a_at	A	A1TS	POPTR_0001s06840	POPTR_0001s06840 (11)	scaffold_1:5233417-5233696(+) (11)	NA	A8K979	ERI1 exoribonuclease 2	AT3G15140.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g17279.1	"exonuclease, putative, expressed"	Medtr8g043920.1	"Prion protein-interacting protein, related "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.9962.3.S1_a_at	A	A1TS	POPTR_0003s19370	POPTR_0003s19370 (11)	scaffold_3:18117364-18117445(-) (11)	POPTR_0001s06840 (8)	Q5HZL1	ERI1 exoribonuclease 2	AT3G15140.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g17279.1	"exonuclease, putative, expressed"	Medtr8g043920.1	"Prion protein-interacting protein, related "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.9962.3.S1_at	A	A1TS	POPTR_0003s19370	POPTR_0003s19370 (11)	scaffold_3:18117028-18117361(-) (11)	NA	Q5HZL1	ERI1 exoribonuclease 2	AT3G15140.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g17279.1	"exonuclease, putative, expressed"	Medtr8g043920.1	"Prion protein-interacting protein, related "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.99659.1.S1_at	A	A1TS	POPTR_0011s15820	POPTR_0011s15820 (11)	scaffold_11:17878523-17879228(+) (11)	NA	C6TG62	UPF0497 membrane protein 14	AT5G44550.1	Uncharacterised protein family (UPF0497) 	LOC_Os12g41690.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g137870.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99667.1.S1_s_at	A	A1TS	POPTR_0005s25410	POPTR_0005s25410 (11)	scaffold_5:23686432-23686766(+) (11)	NA	Q10RB4	Beta-galactosidase 5	AT4G36360.1	beta-galactosidase 3 	LOC_Os03g06940.1	"beta-galactosidase, putative, expressed"	Medtr5g021090.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.99673.1.S1_at	A	A1MS	POPTR_0004s18430	POPTR_0004s18430 (9)	scaffold_4:18331881-18333276(-) (10)	NA	NA	NA	AT4G38490.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g27690.5	expressed protein	NA	NA	GO:0006605|protein targeting	NA	GO:0016020|membrane
PtpAffx.99673.1.S1_s_at	A	A1TS	POPTR_0004s18430	POPTR_0004s18430 (11)	scaffold_4:18332042-18332780(-) (11)	NA	NA	NA	AT4G38490.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g27690.5	expressed protein	NA	NA	GO:0006605|protein targeting	NA	GO:0016020|membrane
PtpAffx.99678.1.S1_s_at	A	A2TS	POPTR_0002s20450	POPTR_0002s20450 (11)//POPTR_0014s12220 (11)	scaffold_14:9032689-9032870(+) (11)//scaffold_2:16496746-16496927(+) (11)	NA	Q9LXX6	Probable exocyst complex component 6	AT4G02350.1	exocyst complex component sec15B 	LOC_Os01g24950.2	"exocyst complex component 6, putative, expressed"	Medtr1g107350.1	Exocyst complex subunit Sec15-like 	GO:0006904|vesicle docking during exocytosis	NA	GO:0000145|exocyst
PtpAffx.99685.1.S1_s_at	A	A1TS	POPTR_0017s13640	POPTR_0017s13640 (11)	scaffold_17:13737638-13737813(-) (11)	NA	Q9SN86	"Malate dehydrogenase, chloroplastic"	AT3G47520.1	malate dehydrogenase 	LOC_Os08g33720.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.99685.2.S1_at	A	A1TS	POPTR_0004s11170	POPTR_0004s11170 (11)	scaffold_4:9758458-9758872(+) (11)	NA	Q9SN86	"Malate dehydrogenase, chloroplastic"	AT3G47520.1	malate dehydrogenase 	LOC_Os08g33720.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.99685.3.S1_s_at	A	A1TS	POPTR_0017s13640	POPTR_0017s13640 (11)	scaffold_17:13732625-13738944(-) (11)	NA	Q9SN86	"Malate dehydrogenase, chloroplastic"	AT3G47520.1	malate dehydrogenase 	LOC_Os08g33720.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.9969.1.A1_at	A	A1TS	POPTR_0010s19260	POPTR_0010s19260 (11)	scaffold_10:17221964-17222397(-) (11)	NA	Q505D1	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	AT2G31820.1	Ankyrin repeat family protein 	LOC_Os01g61330.1	"ankyrin homolog precursor, putative, expressed"	AC146568_12.1	Major sperm protein AC146568.11 67273-69443 E EGN_Mt090430 200	NA	GO:0005198|structural molecule activity	NA
PtpAffx.997.1.A1_at	A	A1MS	POPTR_0001s05780	POPTR_0001s05780 (10)	scaffold_1:4531461-4531987(+) (11)	NA	Q9LQQ1	"Pentatricopeptide repeat-containing protein At1g07740, mitochondrial"	AT1G07740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g47510.1	"pentatricopeptide, putative"	Medtr3g149040.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99700.1.S1_s_at	A	A1TS	POPTR_0001s22170	POPTR_0001s22170 (11)	scaffold_1:20806310-20806381(+) (11)	NA	P13240	Disease resistance response protein 206	AT2G21100.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07770.1	"dirigent, putative, expressed"	Medtr3g138740.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99728.1.A1_a_at	A	A1TS	POPTR_0005s12900	POPTR_0005s12900 (11)	scaffold_5:9727545-9727611(+) (11)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT2G23790.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99728.1.A1_at	A	A1TS	POPTR_0005s12900	POPTR_0005s12900 (11)	scaffold_5:9727638-9727951(+) (11)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT2G23790.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9973.1.S1_at	A	A1TS	POPTR_0008s06870	POPTR_0008s06870 (11)	scaffold_8:4122040-4122535(-) (11)	NA	Q9D880	Mitochondrial import inner membrane translocase subunit TIM50	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9973.2.S1_at	A	A1TS	POPTR_0010s19580	POPTR_0010s19580 (11)	scaffold_10:17470451-17470568(+) (11)	NA	Q9GZU7	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99734.1.A1_at	A	A1MS	POPTR_0007s15170	POPTR_0007s15170 (9)	scaffold_7:14785580-14786104(+) (9)	NA	Q6R2K1	Protein STRUBBELIG-RECEPTOR FAMILY 5	AT1G78980.1	STRUBBELIG-receptor family 5 	LOC_Os07g42626.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g163300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.99744.1.A1_at	A	A1TS	POPTR_0004s08510	POPTR_0004s08510 (10)	scaffold_4:7098704-7099104(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99749.1.S1_at	A	A1MS	POPTR_0012s03790	POPTR_0012s03790 (10)	scaffold_12:3031655-3032100(+) (10)	NA	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0004371|glycerone kinase activity	NA
PtpAffx.99750.1.S1_at	A	A1TS	POPTR_0007s10810	POPTR_0007s10810 (11)	scaffold_7:10983620-10984053(+) (11)	NA	Q9SLN1	Filament-like plant protein 7	AT2G23360.1	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	NA	NA	GO:0016020|membrane
PtpAffx.9976.1.S1_at	A	A1TS	POPTR_0004s04020	POPTR_0004s04020 (11)	scaffold_4:2862080-2862589(+) (11)	NA	NA	NA	AT2G20760.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	AC233659_11.2	Clathrin light chain AC233659.1 45746-42471 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9976.2.A1_at	A	A1TS	POPTR_0011s04920	POPTR_0011s04920 (11)	scaffold_11:4876261-4876768(+) (11)	NA	NA	NA	AT2G20760.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	AC233659_11.2	Clathrin light chain AC233659.1 45746-42471 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9976.3.A1_at	A	A1TS	POPTR_0001s04420	POPTR_0001s04420 (11)	scaffold_1:3507340-3507811(+) (11)	NA	Q9LMR5	F-box/kelch-repeat protein At1g15670	AT1G15670.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os06g39370.1	"OsFBK16 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g134000.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99761.1.A1_at	A	A1TS	POPTR_0001s29650	POPTR_0001s29650 (11)	scaffold_1:28305986-28306318(+) (11)	NA	Q43117	"Pyruvate kinase isozyme A, chloroplastic"	AT3G22960.1	Pyruvate kinase family protein 	LOC_Os03g46910.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.99764.1.A1_at	A	A1TS	POPTR_0002s20500	POPTR_0002s20500 (10)	scaffold_2:16580973-16581195(+) (10)	NA	Q04500	U3 small nucleolar RNA-associated protein 14	AT4G02400.1	U3 ribonucleoprotein (Utp) family protein 	LOC_Os03g22320.1	"utp14 protein, putative, expressed"	Medtr8g068330.1	Utp14 protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.99779.1.A1_at	A	A1TS	POPTR_0018s11560	POPTR_0018s11560 (9)	scaffold_18:12244468-12245013(-) (9)	NA	Q8W4A5	"APO protein 2, chloroplastic"	AT5G57930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os02g50010.1	"APO, putative, expressed"	Medtr2g104000.1	"Protein of unknown function DUF794, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9978.1.A1_at	A	A1TS	POPTR_0001s34640	POPTR_0001s34640 (9)	scaffold_1:32876307-32876732(-) (9)	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.998.1.A1_at	A	A1TS	POPTR_0016s02940	POPTR_0016s02940 (11)	scaffold_16:1477750-1478239(+) (11)	NA	NA	NA	AT3G56880.1	VQ motif-containing protein 	LOC_Os01g17050.1	"VQ domain containing protein, putative, expressed"	Medtr7g105490.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9980.1.A1_a_at	A	A1TS	POPTR_0010s25820	POPTR_0010s25820 (11)	scaffold_10:21304457-21305561(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT1G51580.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr3g127960.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.99807.1.S1_at	A	A1TS	POPTR_0001s45220	POPTR_0001s45220 (11)	scaffold_1:45722122-45722586(-) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G00820.1	IQ-domain 17 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99810.1.A1_a_at	A	A1TS	POPTR_0016s08470	POPTR_0016s08470 (11)	scaffold_16:6270975-6271766(-) (11)	NA	Q54IF9	Myb-like protein G	AT3G09600.1	Homeodomain-like superfamily protein 	LOC_Os02g45670.1	"myb-like DNA-binding domain containing protein, expressed"	AC235567_21.1	Homeodomain-related AC235567.1 79376-72886 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99810.4.A1_a_at	A	A1TS	POPTR_0006s13530	POPTR_0006s13530 (11)	scaffold_6:10752439-10752640(+) (11)	NA	Q54IF9	Myb-like protein G	AT3G09600.1	Homeodomain-like superfamily protein 	LOC_Os02g45670.1	"myb-like DNA-binding domain containing protein, expressed"	AC235567_21.1	Homeodomain-related AC235567.1 79376-72886 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99814.1.A1_at	A	A1TS	POPTR_0021s00390	POPTR_0021s00390 (11)	scaffold_21:124587-125670(+) (11)	NA	NA	NA	AT1G62250.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g53300.2	expressed protein	Medtr8g147020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99859.1.A1_s_at	A	A1TS	POPTR_0018s02460	POPTR_0018s02460 (11)	scaffold_18:2233040-2233131(+) (11)	NA	Q9LEU7	CBL-interacting serine/threonine-protein kinase 5	AT5G10930.1	CBL-interacting protein kinase 5 	LOC_Os09g25090.1	"CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g016620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.99888.1.A1_at	A	A1TS	POPTR_0014s07940	POPTR_0014s07940 (9)	scaffold_14:5895784-5896037(-) (9)	NA	O80831	Beta-amylase 7	AT2G45880.1	beta-amylase 7 	LOC_Os09g39570.1	"beta-amylase, putative, expressed"	Medtr5g026370.1	"Glycoside hydrolase, family 14; BZR1, transcriptional repressor "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.99892.1.S1_at	A	A1MS	POPTR_0001s13860	POPTR_0001s13860 (11)	scaffold_1:10924294-10924445(+) (11)	NA	Q9C7F7	Uncharacterized GPI-anchored protein At1g27950	AT1G27950.1	glycosylphosphatidylinositol-anchored lipid protein transfer 1 	LOC_Os08g42040.2	"LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g103940.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99906.1.A1_at	A	A1TS	POPTR_0011s14750	POPTR_0011s14750 (10)	scaffold_11:17033313-17033812(+) (10)	NA	A3KPF8	"Pentatricopeptide repeat-containing protein At1g79080, chloroplastic"	AT1G79080.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g35750.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g093590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9992.1.S1_at	A	A1TS	POPTR_0017s07860	POPTR_0017s07860 (11)	scaffold_17:6149405-6149919(-) (11)	NA	NA	NA	AT5G64260.1	EXORDIUM like 2 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g120640.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99938.1.A1_s_at	A	A1TS	POPTR_0008s12090	POPTR_0008s12090 (11)	scaffold_8:7802429-7802634(-) (11)	NA	NA	NA	AT1G68440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr5g067220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99939.1.S1_at	A	A1TS	POPTR_0010s20080	POPTR_0010s20080 (11)	scaffold_10:17825588-17826764(+) (11)	NA	O04195	Uncharacterized protein At2g39920	AT2G39920.2	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os03g21480.1	"HAD superfamily phosphatase, putative, expressed"	Medtr3g093120.1	Acid phosphatase (Class B) 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.99946.1.A1_at	A	A1TS	POPTR_0003s11880	POPTR_0003s11880 (11)	scaffold_3:12612769-12613263(-) (11)	NA	NA	NA	AT1G12530.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56420.1); Has 54 Blast hits to 53 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g12720.1	expressed protein	Medtr1g100530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99963.1.A1_at	A	A1TS	POPTR_0010s11880	POPTR_0010s11880 (10)	scaffold_10:12024471-12024840(+) (10)	NA	Q9ZU91	"Glucan endo-1,3-beta-glucosidase 3"	AT2G01630.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g085920.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.99965.1.A1_at	A	A1TS	POPTR_0007s10690	POPTR_0007s10690 (9)	scaffold_7:10741786-10741885(+) (9)	NA	P07728	Glutelin type-A 1	AT2G28680.1	RmlC-like cupins superfamily protein 	LOC_Os01g74480.1	"cupin domain containing protein, expressed"	Medtr4g098190.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.99965.1.A1_s_at	A	A1TS	POPTR_0007s10690	POPTR_0007s10690 (11)	scaffold_7:10741448-10741798(+) (11)	NA	P07728	Glutelin type-A 1	AT2G28680.1	RmlC-like cupins superfamily protein 	LOC_Os01g74480.1	"cupin domain containing protein, expressed"	Medtr4g098190.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.99972.1.A1_at	A	A1TS	POPTR_0010s22910	POPTR_0010s22910 (11)	scaffold_10:19642377-19642807(-) (11)	NA	Q99685	Monoglyceride lipase	AT5G19290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g21560.1	"esterase/lipase/thioesterase family protein, putative, expressed"	Medtr1g120940.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99986.1.S1_at	A	A1TS	POPTR_0002s10770	POPTR_0002s10770 (11)	scaffold_2:7807147-7807595(+) (11)	NA	Q5RFD2	Multidrug and toxin extrusion protein 1	AT1G58340.1	MATE efflux family protein 	LOC_Os02g45380.1	"MATE domain containing protein, expressed"	Medtr5g076410.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
Ptp.10.1.A1_at	B	B1S	POPTR_0002s08930	POPTR_0002s08930 (8:537)	NA	NA	P36859	Nitrate reductase [NADH]	AT1G77760.1	nitrate reductase 1 	LOC_Os08g36480.1	"nitrate reductase, putative, expressed"	Medtr3g098350.1	Mo-co oxidoreductase dimerisation domain 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0030151|molybdenum ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1003.1.A1_at	B	B1S	POPTR_0015s03790	POPTR_0015s03790 (6:616)	NA	NA	NA	NA	AT1G67060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). 	LOC_Os02g12870.1	expressed protein	Medtr7g093340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1009.1.A1_at	B	B1S	POPTR_0016s05810	POPTR_0016s05810 (8:207)	NA	NA	Q8RY99	"DNA repair protein recA homolog 2, mitochondrial"	AT3G10140.1	RECA homolog 3 	LOC_Os01g71690.2	"recA protein, expressed"	Medtr7g108080.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1011.2.S1_at	B	B1S	POPTR_0016s06810	POPTR_0016s06810 (5:497)	NA	NA	Q54SW1	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179	AT3G11780.1	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1017.1.A1_at	B	B1S	POPTR_0016s06260	POPTR_0016s06260 (7:262)	NA	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT3G24420.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g10620.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g023380.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1018.1.A1_at	B	B2S	POPTR_0007s04690	POPTR_0010s11130 (5:234)//POPTR_0007s04690 (5:168)	NA	NA	Q9LKW9	Sodium/hydrogen exchanger 7	AT2G01980.1	"sodium proton exchanger, putative (NHX7) (SOS1) "	LOC_Os12g44360.2	"sodium/hydrogen exchanger 7, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.102.2.S1_a_at	B	B1S	POPTR_0001s36560	POPTR_0001s36560 (8:31)	NA	NA	Q8RWE8	GDP-L-galactose phosphorylase 1	AT4G26850.1	mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase 	LOC_Os12g08810.1	"VTC2, putative, expressed"	Medtr5g100780.1	"VTC2-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1020.2.A1_at	B	B1A	POPTR_0010s22940	POPTR_0010s22940 (8:308)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1021.1.A1_at	B	B1S	POPTR_0015s15790	POPTR_0015s15790 (6:323)	NA	NA	NA	NA	NA	NA	LOC_Os02g07190.1	expressed protein	Medtr2g034510.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1024.1.A1_at	B	B1S	POPTR_0011s13110	POPTR_0011s13110 (8:347)	NA	NA	Q9LW83	G-type lectin S-receptor-like serine/threonine-protein kinase CES101	AT3G16030.1	lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052620.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1026.1.A1_at	B	B1S	POPTR_0014s08750	POPTR_0014s08750 (1:392)	NA	NA	A4IFP3	Fatty acid desaturase 3	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	AC146568_19.1	"Zinc finger, C2H2-type; Fatty acid desaturase/sphingolipid desaturase AC146568.11 95455-93352 E EGN_Mt090430 200"	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0016491|oxidoreductase activity	NA
Ptp.1029.1.S1_at	B	B1S	POPTR_0004s20730	POPTR_0004s20730 (7:291)	NA	NA	Q9ZVD0	Serrate RNA effector molecule	AT2G27100.1	C2H2 zinc-finger protein SERRATE (SE) 	LOC_Os06g48530.1	"ZOS6-09 - C2H2 zinc finger protein, expressed"	Medtr8g047770.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1032.1.S1_at	B	B1S	POPTR_0004s10800	POPTR_0004s10800 (8:560)	NA	NA	Q96502	Zinc finger protein CONSTANS-LIKE 2	AT3G02380.1	CONSTANS-like 2 	LOC_Os06g16370.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr1g016230.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1036.1.S1_at	B	B1S	POPTR_0001s39610	POPTR_0001s39610 (3:244)	NA	NA	NA	NA	AT1G53380.3	Plant protein of unknown function (DUF641) 	LOC_Os10g23220.2	"GIL1, putative, expressed"	Medtr2g091750.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1037.1.S1_at	B	B1S	POPTR_0013s12390	POPTR_0013s12390 (0:246)	NA	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.1044.1.S1_at	B	B1S	POPTR_0001s38080	POPTR_0001s38080 (0:436)	NA	NA	Q41014	"Ferredoxin--NADP reductase, root isozyme, chloroplastic"	AT4G05390.1	root FNR 1 	LOC_Os03g57120.1	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr2g129660.1	Oxidoreductase FAD/NAD(P)-binding 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.1047.1.A1_at	B	B1S	POPTR_0005s10270	POPTR_0005s10270 (5:237)	NA	NA	Q8W2B8	Serine acetyltransferase 4	AT4G35640.1	serine acetyltransferase 3;2 	LOC_Os03g04140.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g023630.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
Ptp.1050.1.A1_at	B	B1S	POPTR_0012s02980	POPTR_0012s02980 (8:255)	NA	NA	Q9FGR0	Cleavage and polyadenylation specificity factor subunit 1	AT5G51660.1	cleavage and polyadenylation specificity factor 160 	LOC_Os04g18010.1	"cleavage and polyadenylation specificity factor subunit 1, putative, expressed"	Medtr4g137930.1	"CPSF A subunit, C-terminal; WD40-like "	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
Ptp.1053.1.A1_at	B	B1S	POPTR_0005s06520	POPTR_0005s06520 (6:333)	NA	NA	Q941D6	Histone deacetylase 14	AT4G33470.1	histone deacetylase 14 	LOC_Os12g08220.1	"histone deacetylase, putative, expressed"	Medtr4g142920.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1054.1.A1_at	B	B1S	POPTR_0019s12190	POPTR_0019s12190 (0:168)	NA	NA	P14314	Glucosidase 2 subunit beta	AT2G42390.1	"protein kinase C substrate, heavy chain-related "	LOC_Os01g16970.1	"glucosidase II beta subunit-like domain containing protein, expressed"	AC233675_14.1	"Glucosidase 2 subunit beta precursor, related AC233675.1 72073-74269 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1055.1.S1_at	B	B1S	POPTR_0004s22700	POPTR_0004s22700 (6:525)	NA	NA	Q5REY4	"28S ribosomal protein S16, mitochondrial"	AT5G56940.1	Ribosomal protein S16 family protein 	LOC_Os09g32274.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1056.1.S1_at	B	B1A	POPTR_0013s09030	POPTR_0013s09030 (8:672)	NA	NA	O04933	Sucrose-phosphate synthase 2	AT4G10120.2	Sucrose-phosphate synthase family protein 	LOC_Os01g69030.4	"sucrose-phosphate synthase, putative, expressed"	Medtr5g098550.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
Ptp.1059.1.A1_at	B	B1S	POPTR_0005s05070	POPTR_0005s05070 (8:327)	NA	NA	Q9FQ04	5'-3' exoribonuclease 4	AT1G54490.1	exoribonuclease 4 	LOC_Os03g58060.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr7g140440.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.106.1.S1_at	B	B1S	POPTR_0001s41320	POPTR_0001s41320 (8:530)	NA	NA	Q15034	Probable E3 ubiquitin-protein ligase HERC3	AT3G15430.2	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os07g27490.1	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr3g102750.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1060.1.A1_at	B	B2S	POPTR_0223s00200	POPTR_0223s00200 (0:75)//POPTR_0223s00210 (0:75)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
Ptp.1061.1.A1_at	B	B1S	POPTR_0001s05650	POPTR_0001s05650 (0:14)	scaffold_1:4371240-4371375(+) (9)	NA	Q9SH30	Putative copper-transporting ATPase 3	AT1G63440.1	heavy metal atpase 5 	LOC_Os02g10290.1	"copper-transporting ATPase, putative, expressed"	Medtr8g012740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
Ptp.1066.1.A1_at	B	B1S	POPTR_0001s46420	POPTR_0001s46420 (8:125)	NA	NA	Q9SA76	"Pentatricopeptide repeat-containing protein At1g30610, chloroplastic"	AT1G30610.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os01g48380.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g101620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1068.1.S1_at	B	B1S	POPTR_0006s13280	POPTR_0006s13280 (1:108)	NA	NA	Q9JMF7	Dolichyldiphosphatase 1	AT5G03080.1	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os03g17940.1	"phosphatase, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	GO:0016020|membrane
Ptp.108.1.A1_at	B	B1S	POPTR_0012s04490	POPTR_0012s04490 (0:249)	NA	NA	Q9FR44	Phosphoethanolamine N-methyltransferase 1	AT1G48600.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50030.1	"CPuORF25 - conserved peptide uORF-containing transcript, expressed"	Medtr6g083400.1	"Phosphoethanolamine N-methyltransferase, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1080.1.S1_at	B	B1S	POPTR_0010s13990	POPTR_0010s13990 (0:158)	NA	NA	Q84V83	Leucoanthocyanidin reductase	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g15360.1	nmrA-like family domain containing protein	Medtr1g118020.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.1088.1.S1_at	B	B1S	POPTR_0011s07300	POPTR_0011s07300 (0:583)	NA	NA	P25776	Oryzain alpha chain	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g068320.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.1089.1.A1_at	B	B1S	POPTR_0012s01130	POPTR_0012s01130 (1:403)	NA	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr2g008380.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.109.1.S1_at	B	B1S	POPTR_0003s05610	POPTR_0003s05610 (8:376)	scaffold_3:7013810-7014295(-) (9)	NA	Q39103	Gibberellin 3-beta-dioxygenase 1	AT1G15550.1	gibberellin 3-oxidase 1 	LOC_Os01g08220.1	"gibberellin 3-beta-dioxygenase 2-2, putative, expressed"	Medtr2g123500.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1092.1.A1_at	B	B1S	POPTR_0001s34700	POPTR_0001s34700 (8:116)	NA	NA	NA	NA	AT3G01370.1	CRM family member 2 	LOC_Os04g39060.2	"CRS1/YhbY domain containing protein, expressed"	Medtr6g009130.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
Ptp.1093.1.S1_at	B	B1S	POPTR_0018s04000	POPTR_0018s04000 (1:289)	NA	NA	Q641Z5	Cation transport regulator-like protein 2	AT4G31290.1	ChaC-like family protein 	LOC_Os02g26700.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr3g132970.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1094.1.S1_at	B	B1S	POPTR_0014s14720	POPTR_0014s14720 (0:104)	NA	NA	Q9LYT5	Probable pectinesterase/pectinesterase inhibitor 35	AT3G59010.1	pectin methylesterase 61 	LOC_Os02g54190.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.110.1.S1_at	B	B1S	POPTR_0013s15080	POPTR_0013s15080 (8:485)	NA	NA	O22874	Expansin-A8	AT2G40610.1	expansin A8 	LOC_Os01g60770.1	"expansin precursor, putative, expressed"	Medtr5g083140.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1100.1.A1_at	B	B1S	POPTR_0015s13470	POPTR_0015s13470 (8:516)	NA	NA	NA	NA	AT5G52230.2	methyl-CPG-binding domain protein 13 	LOC_Os04g19684.1	"methyl-CpG binding domain containing protein, expressed"	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.1104.1.A1_at	B	B1S	POPTR_0011s10090	POPTR_0011s10090 (2:147)	scaffold_11:12609767-12610234(+) (11)	NA	Q9FVJ3	ADP-ribosylation factor GTPase-activating protein AGD12	AT4G21160.4	Calcium-dependent ARF-type GTPase activating protein family 	LOC_Os06g40704.3	"stromal membrane-associated protein, putative, expressed"	Medtr4g136810.1	C2; Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.1106.1.A1_at	B	B1S	POPTR_0018s02580	POPTR_0018s02580 (2:328)	NA	NA	Q54K50	Phospholipase D Y	NA	NA	LOC_Os06g44060.2	"phospholipase D. Active site motif family protein, expressed"	Medtr3g138360.1	Phospholipase D/Transphosphatidylase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1108.2.A1_at	B	B1S	POPTR_0015s06480	POPTR_0015s06480 (7:249)	NA	NA	Q8RWD0	Zinc finger protein CONSTANS-LIKE 16	AT1G25440.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g15330.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr4g158260.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1109.1.A1_at	B	B1S	POPTR_0017s04880	POPTR_0017s04880 (7:209)	NA	NA	O22870	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplastic"	AT2G43560.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g42850.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g092670.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.111.1.S1_at	B	B1S	POPTR_0016s03450	POPTR_0016s03450 (5:1038)	NA	NA	Q5SMQ9	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr7g106430.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.1113.1.S1_at	B	B1S	POPTR_0010s19680	POPTR_0010s19680 (8:953)	NA	NA	Q5XG58	Elongator complex protein 4	AT3G11220.1	Paxneb protein-related 	LOC_Os06g43280.1	"paxneb-related protein, putative, expressed"	AC202489_19.1	PAXNEB AC202489.10 96513-101640 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	NA	GO:0033588|Elongator holoenzyme complex
Ptp.1116.1.A1_at	B	B1S	POPTR_0019s04640	POPTR_0019s04640 (4:306)	NA	NA	Q9ATM2	Aquaporin SIP1-2	AT3G04090.1	small and basic intrinsic protein 1A 	LOC_Os01g08660.1	"aquaporin protein, putative, expressed"	Medtr7g099920.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1118.1.A1_at	B	B1S	POPTR_0015s10810	POPTR_0015s10810 (1:370)	NA	NA	Q9BRS2	Serine/threonine-protein kinase RIO1	AT5G37350.1	Serine/threonine-protein kinase Rio1 	LOC_Os07g06820.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr7g107800.1	"Tyrosine protein kinase, active site "	NA	GO:0003824|catalytic activity||GO:0005524|ATP binding	NA
Ptp.112.1.S1_at	B	B1S	POPTR_0010s12320	POPTR_0010s12320 (6:428)	NA	NA	Q9S7Z8	Auxin efflux carrier component 3	AT1G70940.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.1122.1.S1_at	B	B1S	POPTR_0008s10050	POPTR_0008s10050 (7:194)	NA	NA	P29344	"30S ribosomal protein S1, chloroplastic"	AT5G30510.1	ribosomal protein S1 	LOC_Os03g20100.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
Ptp.1125.1.A1_at	B	B1A	POPTR_0006s19120	POPTR_0006s19120 (1:312)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1129.1.A1_at	B	B1S	POPTR_0006s12420	POPTR_0006s12420 (3:207)	NA	NA	O04375	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform	AT5G03470.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g47790.3	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
Ptp.1130.1.A1_at	B	B1S	POPTR_0008s03650	POPTR_0008s03650 (3:125)	NA	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G04250.2	Cysteine proteinases superfamily protein 	LOC_Os03g64219.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g120470.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1132.1.S1_at	B	B1S	POPTR_0016s14890	POPTR_0016s14890 (7:453)	NA	NA	NA	NA	AT3G05975.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os12g02700.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr7g080790.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
Ptp.1139.1.A1_at	B	B2S	POPTR_0017s00450	POPTR_0017s00470 (0:286)//POPTR_0017s00450 (0:262)	NA	NA	O49621	MLO-like protein 1	AT4G02600.2	Seven transmembrane MLO family protein 	LOC_Os05g34550.1	"MLO domain containing protein, putative, expressed"	Medtr3g163760.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
Ptp.1148.1.S1_at	B	B1S	POPTR_0001s32000	POPTR_0001s32000 (0:91)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1148.2.S1_at	B	B1S	POPTR_0001s32000	POPTR_0001s32000 (4:366)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1151.1.S1_a_at	B	B1S	POPTR_0005s23590	POPTR_0005s23590 (8:31)	NA	NA	Q94LX1	"Chlorophyllase-1, chloroplastic"	AT1G19670.1	chlorophyllase 1 	LOC_Os10g28370.1	"chlorophyllase-2, chloroplast precursor, putative, expressed"	Medtr8g096370.1	Chlorophyllase 	GO:0015996|chlorophyll catabolic process	GO:0047746|chlorophyllase activity	NA
Ptp.1151.2.A1_at	B	B1S	POPTR_0005s23590	POPTR_0005s23590 (2:268)	NA	NA	Q94LX1	"Chlorophyllase-1, chloroplastic"	AT1G19670.1	chlorophyllase 1 	LOC_Os10g28370.1	"chlorophyllase-2, chloroplast precursor, putative, expressed"	Medtr8g096370.1	Chlorophyllase 	GO:0015996|chlorophyll catabolic process	GO:0047746|chlorophyllase activity	NA
Ptp.1155.1.S1_at	B	B1S	POPTR_0006s18280	POPTR_0006s18280 (0:908)	NA	NA	Q05001	NADPH--cytochrome P450 reductase	AT4G30210.2	P450 reductase 2 	LOC_Os09g38620.1	"NADPH reductase, putative, expressed"	Medtr8g129070.1	"Flavodoxin/nitric oxide synthase; Sulphite reductase [NADPH] flavoprotein, alpha chain "	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.1156.1.S1_at	B	B1S	POPTR_0002s16460	POPTR_0002s16460 (6:415)	NA	NA	Q54IF9	Myb-like protein G	AT4G01280.2	Homeodomain-like superfamily protein 	LOC_Os02g45670.1	"myb-like DNA-binding domain containing protein, expressed"	AC235567_21.1	Homeodomain-related AC235567.1 79376-72886 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1159.2.A1_at	B	B1S	POPTR_0008s01240	POPTR_0008s01240 (4:297)	NA	NA	Q9ZVC9	Protein FAR1-RELATED SEQUENCE 3	AT2G27110.2	FAR1-related sequence 3 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr3g111200.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.1161.3.S1_at	B	B1S	POPTR_0007s12630	POPTR_0007s12630 (6:485)	NA	NA	NA	NA	AT4G36660.1	Protein of unknown function (DUF1195) 	LOC_Os07g41660.1	expressed protein	Medtr5g019780.1	Protein of unknown function DUF1195 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1165.1.A1_at	B	B1S	POPTR_0002s23880	POPTR_0002s23880 (8:403)	NA	NA	NA	NA	AT5G13950.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os07g27760.1	expressed protein	Medtr7g097240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1167.1.A1_at	B	B1S	POPTR_0013s15400	POPTR_0013s15400 (2:91)	NA	NA	NA	NA	AT5G58320.2	Kinase interacting (KIP1-like) family protein 	LOC_Os01g07370.2	"KIP1, putative, expressed"	Medtr5g083340.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.117.1.S1_at	B	B1S	POPTR_0006s12620	POPTR_0006s12620 (5:203)	scaffold_6:9771150-9771508(-) (10)	NA	Q14186	Transcription factor Dp-1	AT5G03415.1	Transcription factor DP 	LOC_Os03g05760.1	"transcription factor Dp, putative, expressed"	Medtr4g107200.1	Winged helix repressor DNA-binding; 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
Ptp.1172.2.S1_at	B	B1S	POPTR_0014s16580	POPTR_0014s16580 (5:104)	NA	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os07g41580.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr5g103350.1	"Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone "	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.1176.2.A1_at	B	B1S	POPTR_0006s18690	POPTR_0006s18690 (0:286)	NA	NA	A6XNC6	Flavonoid 3-O-glucosyltransferase	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128410.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008152|metabolic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.1177.1.A1_at	B	B1S	POPTR_0004s00720	POPTR_0004s00720 (6:442)	NA	NA	P12617	"Malonyl-CoA decarboxylase, mitochondrial"	AT4G04320.1	malonyl-CoA decarboxylase family protein 	LOC_Os09g23070.1	"malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0050080|malonyl-CoA decarboxylase activity	NA
Ptp.118.1.S1_at	B	B1S	POPTR_0002s16530	POPTR_0002s16530 (7:298)	scaffold_2:12373645-12374033(-) (9)	NA	Q9MB95	1-aminocyclopropane-1-carboxylate synthase 1	AT3G61510.1	ACC synthase 1 	LOC_Os04g48850.1	"aminotransferase, classes I and II, domain containing protein, expressed"	AC235567_32.1	Aminotransferases class-I pyridoxal-phosphate-binding site; ; AC235567.1 113311-109020 E EGN_Mt090430 200	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.1188.1.A1_at	B	B1S	POPTR_0003s12920	POPTR_0003s12920 (4:193)	NA	NA	O23066	Cytochrome P450 86A2	AT1G63710.1	"cytochrome P450, family 86, subfamily A, polypeptide 7 "	LOC_Os02g44654.2	"cytochrome P450, putative, expressed"	Medtr8g031910.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.1192.1.A1_at	B	B1S	POPTR_0001s11410	POPTR_0001s11410 (5:326)	NA	NA	NA	NA	AT4G24140.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g38860.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g103890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1193.1.A1_at	B	B1S	POPTR_0001s17920	POPTR_0001s17920 (6:283)	NA	NA	NA	NA	AT3G15940.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g15780.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
Ptp.1195.1.S1_at	B	B1S	POPTR_0005s15430	POPTR_0005s15430 (8:382)	NA	NA	Q39208	Delta(7)-sterol-C5(6)-desaturase 1	AT3G02580.1	sterol 1 	LOC_Os01g04260.1	"fatty acid hydroxylase, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
Ptp.120.1.S1_at	B	B1S	POPTR_0004s13910	POPTR_0004s13910 (7:478)	NA	NA	Q39128	Potassium channel KAT1	AT5G46240.1	potassium channel in Arabidopsis thaliana 1 	LOC_Os02g14840.1	"potassium channel KAT1, putative, expressed"	Medtr2g024740.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.1201.1.A1_at	B	B1S	POPTR_0006s26160	POPTR_0006s26160 (0:116)	NA	NA	NA	NA	AT5G11460.1	Protein of unknown function (DUF581) 	LOC_Os01g08520.1	"DUF581 domain containing protein, expressed"	Medtr3g135880.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1204.1.A1_at	B	B1S	POPTR_0014s09860	POPTR_0014s09860 (8:433)	NA	NA	P46897	Homeobox-leucine zipper protein ATHB-7	AT2G46680.1	homeobox 7 	LOC_Os09g35910.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g029340.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.1209.1.A1_at	B	B1S	POPTR_0002s08250	POPTR_0002s08250 (0:6)	NA	NA	NA	NA	AT1G21740.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g35070.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.121.1.S1_at	B	B1S	POPTR_0003s13370	POPTR_0003s13370 (1:739)	NA	NA	Q9FE38	Potassium transporter 3	AT4G23640.1	Potassium transporter family protein 	LOC_Os01g70940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.1216.1.A1_at	B	B1S	POPTR_0013s02210	POPTR_0013s02210 (3:178)	NA	NA	Q5H7P5	Mannosylglycoprotein endo-beta-mannosidase	AT1G09010.1	glycoside hydrolase family 2 protein 	LOC_Os05g32530.1	"mannosylglycoprotein endo-beta-mannosidase, putative, expressed"	Medtr1g099500.1	"Glycoside hydrolase family 2, sugar binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.122.1.S1_at	B	B1S	POPTR_0003s01270	POPTR_0003s01270 (8:577)	NA	NA	Q38898	Potassium channel AKT2/3	AT4G22200.1	potassium transport 2/3 	LOC_Os05g35410.1	"potassium channel AKT2/3, putative, expressed"	Medtr2g006680.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.1222.1.S1_a_at	B	B1S	POPTR_0018s13650	POPTR_0018s13650 (0:383)	NA	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.1229.1.S1_at	B	B1S	POPTR_0011s00390	POPTR_0011s00390 (4:106)	NA	NA	O22059	Transcription factor CPC	AT1G01380.1	Homeodomain-like superfamily protein 	LOC_Os01g43180.1	"MYB family transcription factor, putative"	Medtr2g103740.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1230.1.S1_at	B	B1S	POPTR_0009s09010	POPTR_0009s09010 (8:1181)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1232.1.S1_at	B	B1S	POPTR_0004s14960	POPTR_0004s14960 (6:338)	NA	NA	Q8VY06	"Presequence protease 2, chloroplastic/mitochondrial"	AT3G19170.1	presequence protease 1 	LOC_Os02g52390.1	"M16 domain containing zinc peptidase, putative, expressed"	AC151525_23.1	"Small acid-soluble spore protein, alpha/beta type; ; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF AC151525.18 114168-104858 E EGN_Mt090430 200"	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.1236.2.S1_at	B	B1S	POPTR_0006s18890	POPTR_0006s18890 (3:211)	NA	NA	O08560	Diacylglycerol kinase zeta	AT4G30340.1	diacylglycerol kinase 7 	LOC_Os02g54650.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1239.1.S1_at	B	B1S	POPTR_0001s12220	POPTR_0001s12220 (0:522)	NA	NA	Q8L7E3	Vacuolar-sorting receptor 7	AT1G30900.1	VACUOLAR SORTING RECEPTOR 6 	LOC_Os06g45380.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1245.1.S1_at	B	B1S	POPTR_0010s21430	POPTR_0010s21430 (8:578)	NA	NA	Q8Z068	Methionyl-tRNA synthetase	AT3G55400.1	methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) 	LOC_Os03g11120.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr1g023340.1	"Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.1253.1.S1_at	B	B1S	POPTR_0005s28010	POPTR_0005s28010 (5:434)	NA	NA	Q8RY95	Squamosa promoter-binding-like protein 14	AT1G20980.1	squamosa promoter binding protein-like 14 	LOC_Os08g40260.1	"OsSPL15 - SBP-box gene family member, expressed"	Medtr1g039740.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.1254.1.S1_x_at	B	B1S	POPTR_0001s34950	POPTR_0001s34950 (5:843)	NA	NA	P16016	"Carbonic anhydrase, chloroplastic"	AT3G01500.1	carbonic anhydrase 1 	LOC_Os01g45274.1	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr6g006530.2	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
Ptp.1263.1.S1_at	B	B1S	POPTR_0019s07900	POPTR_0019s07900 (8:415)	NA	NA	Q6P5F9	Exportin-1	AT5G17020.1	exportin 1A 	LOC_Os03g64080.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr4g106960.1	"Importin-beta, N-terminal; "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
Ptp.1268.1.S1_s_at	B	B1S	POPTR_0001s07010	POPTR_0001s07010 (3:95)	NA	NA	Q7KWN2	Probable cytochrome P450 525A1	AT1G31800.1	"cytochrome P450, family 97, subfamily A, polypeptide 3 "	LOC_Os07g45000.1	"cytochrome P450, putative, expressed"	Medtr4g032760.2	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1275.1.S1_x_at	B	B1S	POPTR_0018s09030	POPTR_0018s09030 (3:976)	NA	NA	Q9XEX2	Peroxiredoxin-2B	AT1G65980.1	thioredoxin-dependent peroxidase 1 	LOC_Os01g48420.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.1278.1.A1_at	B	B1S	POPTR_0003s19230	POPTR_0003s19230 (7:1380)	scaffold_3:18021313-18023417(-) (9)	NA	A7MCT6	Ethanolamine kinase 2	AT1G74320.1	Protein kinase superfamily protein 	LOC_Os01g51920.1	"phosphotransferase, putative, expressed"	Medtr3g005000.1	"Choline kinase, N-terminal; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1279.1.S1_at	B	B1S	POPTR_0009s06020	POPTR_0009s06020 (5:661)	NA	NA	Q5R4F4	Protein transport protein Sec31A	AT3G63460.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g46370.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.128.1.S1_at	B	B1S	POPTR_0005s23980	POPTR_0005s23980 (6:695)	NA	NA	P13089	Auxin-induced protein AUX28	AT4G14550.1	indole-3-acetic acid inducible 14 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1282.1.S1_at	B	B1S	POPTR_0010s03210	POPTR_0010s03210 (2:149)	NA	NA	Q10LG8	Tubby-like F-box protein 6	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1283.1.S1_at	B	B1S	POPTR_0007s01840	POPTR_0007s01840 (7:322)	NA	NA	O48593	"Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial"	AT4G17300.1	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os07g30200.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr8g105750.1	"Aspartyl-tRNA synthetase bacterial/mitochondrial type; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.1286.2.A1_at	B	B1S	POPTR_0006s18960	POPTR_0006s18960 (3:2023)	NA	NA	P53533	Chaperone protein ClpB 1	AT5G57710.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g15230.1	"heat shock protein-related, putative, expressed"	Medtr8g127930.1	"ATP binding, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1289.1.S1_at	B	B1S	POPTR_0001s21430	POPTR_0001s21430 (8:214)	NA	NA	A5JTQ3	Beta-xylosidase/alpha-L-arabinofuranosidase 2	AT5G64570.1	beta-D-xylosidase 4 	LOC_Os04g54810.1	"beta-D-xylosidase, putative, expressed"	Medtr2g008400.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.129.1.S1_at	B	B1S	POPTR_0014s10730	POPTR_0014s10730 (3:790)	NA	NA	Q9M1R4	Auxin-responsive protein IAA30	AT3G62100.1	indole-3-acetic acid inducible 30 	LOC_Os01g18360.1	"OsIAA4 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g133620.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1291.1.S1_at	B	B1S	POPTR_0001s43080	POPTR_0001s43080 (4:224)	NA	NA	O65351	Subtilisin-like protease	AT4G20430.1	Subtilase family protein 	LOC_Os01g56320.1	"OsSub4 - Putative Subtilisin homologue, expressed"	Medtr4g137790.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA; "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1292.1.S1_at	B	B1S	POPTR_0011s13250	POPTR_0011s13250 (8:444)	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1293.1.S1_s_at	B	B1S	POPTR_0005s26990	POPTR_0005s26990 (2:98)	NA	NA	NA	NA	AT1G76200.1	unknown protein; Has 96 Blast hits to 96 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 47; Plants - 38; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os05g03150.1	expressed protein	Medtr4g100950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1295.1.S1_at	B	B1S	POPTR_0010s04230	POPTR_0010s04230 (3:168)	NA	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT3G06035.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1296.1.S1_at	B	B1S	POPTR_0001s00310	POPTR_0001s00310 (7:947)	NA	NA	P49244	"3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic"	AT1G62640.2	3-ketoacyl-acyl carrier protein synthase III 	LOC_Os04g55060.1	"3-oxoacyl-synthase III, chloroplast precursor, putative, expressed"	Medtr4g021760.1	"3-oxoacyl- synthase III, chloroplast precursor, putative "	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004315|3-oxoacyl-[acyl-carrier-protein] synthase activity	NA
Ptp.1298.1.S1_at	B	B1S	POPTR_0002s06870	POPTR_0002s06870 (4:542)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1300.1.S1_at	B	B1S	POPTR_0001s12330	POPTR_0001s12330 (5:388)	NA	NA	NA	NA	AT5G44670.1	Domain of unknown function (DUF23) 	LOC_Os06g22330.1	expressed protein	Medtr8g084210.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.131.1.S1_at	B	B1S	POPTR_0008s13180	POPTR_0008s13180 (3:266)	NA	NA	Q9ZSQ4	"Phosphoglucomutase, cytoplasmic"	AT1G70730.1	Phosphoglucomutase/phosphomannomutase family protein 	LOC_Os03g50480.1	"phosphoglucomutase, putative, expressed"	Medtr4g157910.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
Ptp.1310.1.A1_at	B	B1S	POPTR_0001s18400	POPTR_0001s18400 (4:243)	scaffold_1:15462963-15463568(-) (11)	NA	Q66GQ3	Protein disulfide isomerase-like 1-6	AT3G16110.1	PDI-like 1-6 	LOC_Os06g06790.1	"OsPDIL1-5  protein disulfide isomerase PDIL1-5, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.1313.1.S1_at	B	B1S	POPTR_0008s22410	POPTR_0008s22410 (7:1007)	NA	NA	Q39659	Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a	AT3G06860.1	multifunctional protein 2 	LOC_Os01g24680.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr8g138540.1	3-hydroxyacyl-CoA dehydrogenase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.1316.1.A1_at	B	B1S	POPTR_0006s23820	POPTR_0006s23820 (0:265)	NA	NA	Q5JVF3	PCI domain-containing protein 2	AT2G19560.1	proteasome family protein 	LOC_Os09g21760.1	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1333.1.S1_at	B	B1S	POPTR_0002s26350	POPTR_0002s26350 (2:142)	NA	NA	NA	NA	AT1G45170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits to 62 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g63860.1	"DANA2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1334.1.S1_at	B	B1S	POPTR_0012s13680	POPTR_0012s13680 (7:212)	NA	NA	Q8W234	Transcriptional corepressor SEUSS	AT5G62090.2	SEUSS-like 2 	LOC_Os06g03600.3	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1336.1.S1_at	B	B1S	POPTR_0005s07190	POPTR_0005s07190 (0:247)	NA	NA	Q39017	Diacylglycerol kinase 1	AT5G63770.1	diacylglycerol kinase 2 	LOC_Os12g12260.1	"diacylglycerol kinase 1, putative, expressed"	Medtr4g144130.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region; Protein kinase C, phorbol ester/diacylglycerol binding "	GO:0023033|signaling pathway||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1343.1.S1_at	B	B1S	POPTR_0006s20080	POPTR_0006s20080 (7:660)	NA	NA	Q04264	Sister chromatid cohesion protein PDS5	AT4G31880.1	"LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). "	LOC_Os02g39920.1	"AT hook motif family protein, expressed"	Medtr1g017070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1348.1.S1_a_at	B	B1S	POPTR_0011s16730	POPTR_0011s16730 (0:317)	NA	NA	Q5BQN5	WPP domain-associated protein (Fragment)	AT2G34730.1	myosin heavy chain-related 	LOC_Os09g04810.1	"myosin heavy chain-related, putative, expressed"	Medtr2g129750.1	"WPP domain associated protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1348.2.S1_at	B	B1S	POPTR_0011s16730	POPTR_0011s16730 (6:246)	NA	NA	Q5BQN5	WPP domain-associated protein (Fragment)	AT2G34730.1	myosin heavy chain-related 	LOC_Os09g04810.1	"myosin heavy chain-related, putative, expressed"	Medtr2g129750.1	"WPP domain associated protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1349.1.A1_at	B	B1S	POPTR_0013s09080	POPTR_0013s09080 (7:781)	NA	NA	Q9SN28	RING-H2 finger protein ATL7	AT4G10150.1	RING/U-box superfamily protein 	LOC_Os02g35144.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g031670.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1352.1.S1_at	B	B1S	POPTR_0002s19060	POPTR_0002s19060 (1:116)	NA	NA	Q8S528	"Aldehyde dehydrogenase family 2 member B7, mitochondrial"	AT1G23800.1	aldehyde dehydrogenase 2B7 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.1358.1.S1_at	B	B1S	POPTR_0007s13280	POPTR_0007s13280 (8:100)	NA	NA	A4FLF6	UPF0261 protein SACE_5696	AT5G66420.2	"LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 1232 Blast hits to 1230 proteins in 311 species: Archae - 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). "	LOC_Os06g27800.1	"tm-1GCR237 protein, putative, expressed"	Medtr8g092870.1	"Glycoside hydrolase, family 5; Carbamoyl-phosphate synthase L chain, ATP-binding; Protein of unknown function UPF0261 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1361.1.S1_at	B	B1S	POPTR_0008s16160	POPTR_0008s16160 (8:413)	NA	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1364.1.S1_a_at	B	B1S	POPTR_0014s14430	POPTR_0014s14430 (0:40)	scaffold_14:10577523-10577716(-) (10)	NA	P49689	40S ribosomal protein S30	AT5G56670.1	Ribosomal protein S30 family protein 	LOC_Os06g07580.2	expressed protein	Medtr5g012690.1	Ribosomal protein S30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1371.1.S1_at	B	B1S	POPTR_0013s11500	POPTR_0013s11500 (7:145)	NA	NA	NA	NA	AT1G72020.1	unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g35300.1	"SLL1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1372.1.A1_at	B	B1S	POPTR_0005s09970	POPTR_0005s09970 (2:194)	NA	NA	Q6DRN3	Nucleolar complex protein 3 homolog	AT1G79150.1	binding 	LOC_Os06g30320.1	"NOC3 - Putative nucleolar complex subunit 3, expressed"	Medtr7g076380.1	CBF; Nucleolar complex-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1374.1.A1_at	B	B1S	POPTR_0006s28560	POPTR_0006s28560 (0:409)	NA	NA	Q9SB75	Probable xyloglucan glycosyltransferase 5	AT4G31590.1	Cellulose-synthase-like C5 	LOC_Os08g15420.1	"CSLC3 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1382.1.A1_at	B	B1S	POPTR_0005s26970	POPTR_0005s26970 (7:398)	scaffold_5:24790047-24790772(-) (11)	NA	Q84P21	4-coumarate--CoA ligase-like 5	AT1G20510.1	OPC-8:0 CoA ligase1 	LOC_Os03g04000.1	"AMP-binding domain containing protein, expressed"	Medtr8g043300.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1384.1.S1_at	B	B1S	POPTR_0003s22300	POPTR_0003s22300 (7:770)	scaffold_3:20134855-20135699(+) (10)	NA	Q6NQJ7	Protein FAR1-RELATED SEQUENCE 4	AT1G76320.2	FAR1-related sequence 4 	LOC_Os11g45530.1	"transposon protein, putative, unclassified"	Medtr2g117800.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.1385.2.S1_at	B	B1S	POPTR_0006s20030	POPTR_0006s20030 (0:152)	NA	NA	O65554	CBL-interacting serine/threonine-protein kinase 6	AT4G30960.1	SOS3-interacting protein 3 	LOC_Os01g10890.1	"CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g145620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1394.1.A1_at	B	B1S	POPTR_0005s25070	POPTR_0005s25070 (7:153)	scaffold_5:23420760-23420996(+) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1402.1.S1_s_at	B	B1S	POPTR_0016s05550	POPTR_0016s05550 (3:599)	scaffold_16:3478253-3480915(+) (11)	NA	NA	NA	AT1G01170.2	Protein of unknown function (DUF1138) 	LOC_Os06g02420.1	"ATOZI1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1407.1.S1_at	B	B1S	POPTR_0009s10090	POPTR_0009s10090 (8:312)	NA	NA	P43297	Cysteine proteinase RD21a	AT1G47128.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.141.1.S1_at	B	B1S	POPTR_0015s02150	POPTR_0015s02150 (3:663)	NA	NA	Q39219	"Alternative oxidase 1a, mitochondrial"	AT3G22370.1	alternative oxidase 1A 	LOC_Os04g51150.1	"transposon protein, putative, unclassified, expressed"	Medtr5g026770.1	Alternative oxidase 	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
Ptp.141.1.S1_x_at	B	B1S	POPTR_0015s02150	POPTR_0015s02150 (4:698)	NA	NA	Q39219	"Alternative oxidase 1a, mitochondrial"	AT3G22370.1	alternative oxidase 1A 	LOC_Os04g51150.1	"transposon protein, putative, unclassified, expressed"	Medtr5g026770.1	Alternative oxidase 	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
Ptp.1414.1.S1_at	B	B1S	POPTR_0006s13370	POPTR_0006s13370 (8:590)	NA	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1417.1.S1_at	B	B1S	POPTR_0005s17280	POPTR_0005s17280 (3:413)	scaffold_5:14536799-14537389(-) (11)	NA	Q9M3V8	40S ribosomal protein S6	AT5G10360.1	Ribosomal protein S6e 	LOC_Os03g27260.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1417.1.S1_x_at	B	B1S	POPTR_0005s17280	POPTR_0005s17280 (4:413)	scaffold_5:14536803-14537389(-) (11)	NA	Q9M3V8	40S ribosomal protein S6	AT5G10360.1	Ribosomal protein S6e 	LOC_Os03g27260.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.142.1.S1_at	B	B1S	POPTR_0003s10290	POPTR_0003s10290 (3:595)	NA	NA	Q8LEE7	"Alternative oxidase 3, mitochondrial"	AT1G32350.1	alternative oxidase 1D 	LOC_Os04g51160.1	"transposon protein, putative, unclassified, expressed"	Medtr5g026770.1	Alternative oxidase 	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
Ptp.1421.1.S1_at	B	B1S	POPTR_0002s01510	POPTR_0002s01510 (2:126)	NA	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1437.1.S1_s_at	B	B1S	POPTR_0022s00340	POPTR_0022s00340 (3:90)	scaffold_22:80051-80885(+) (11)	NA	Q9ZRE2	Ras-related protein RABD1	AT3G11730.1	Ras-related small GTP-binding family protein 	LOC_Os01g08450.1	"ras-related protein, putative, expressed"	Medtr2g005330.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1437.2.S1_at	B	B1S	POPTR_0022s00340	POPTR_0022s00340 (6:753)	NA	NA	Q9ZRE2	Ras-related protein RABD1	AT3G11730.1	Ras-related small GTP-binding family protein 	LOC_Os01g08450.1	"ras-related protein, putative, expressed"	Medtr2g005330.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.144.1.S1_at	B	B3S	POPTR_0001s16270	POPTR_0001s16270 (7:558)//POPTR_0018s12530 (7:548)//POPTR_0001s16280 (4:331)	NA	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.144.1.S1_x_at	B	B3S	POPTR_0001s16270	POPTR_0001s16270 (7:558)//POPTR_0018s12530 (7:548)//POPTR_0001s16280 (3:331)	NA	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.1442.1.S1_x_at	B	B2S	POPTR_0013s10370	POPTR_0013s10370 (1:706)//POPTR_0013s10380 (0:553)	NA	NA	Q07469	Bark storage protein A	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
Ptp.1444.1.A1_at	B	B1S	POPTR_0011s05740	POPTR_0011s05740 (5:519)	NA	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.1445.1.S1_at	B	B1S	POPTR_0004s16690	POPTR_0004s16690 (2:442)	NA	NA	Q9SCV9	Beta-galactosidase 3	AT4G36360.2	beta-galactosidase 3 	LOC_Os03g06940.1	"beta-galactosidase, putative, expressed"	Medtr5g021090.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1446.1.S1_at	B	B1S	POPTR_0014s00260	POPTR_0014s00260 (8:1371)	NA	NA	Q9C5X9	Histone acetyltransferase HAC1	AT1G79000.1	histone acetyltransferase of the CBP family 1 	LOC_Os02g04490.1	"histone acetyltransferase HAC1, putative, expressed"	Medtr4g163230.1	"Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.145.1.S1_at	B	B1S	POPTR_0013s00220	POPTR_0013s00220 (8:876)	NA	NA	O49934	Phytochrome A	AT1G09570.1	phytochrome A 	LOC_Os03g51030.3	"phytochrome A, putative, expressed"	Medtr1g103490.1	"ATP-binding region, ATPase-like; Phytochrome A/B/C/D/E; ; ; "	"GO:0007165|signal transduction||GO:0023052|signaling||GO:0007600|sensory perception||GO:0018298|protein-chromophore linkage||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0008020|G-protein coupled photoreceptor activity||GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.1450.1.S1_at	B	B1S	POPTR_0005s09300	POPTR_0005s09300 (2:281)	NA	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT3G19910.1	RING/U-box superfamily protein 	LOC_Os08g43480.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr1g143530.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1470.1.S1_at	B	B1S	POPTR_0006s04830	POPTR_0006s04830 (5:242)	scaffold_6:3356228-3356531(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1471.2.S1_at	B	B1S	POPTR_0166s00200	POPTR_0166s00200 (1:130)	NA	NA	P40691	Auxin-induced protein PCNT115	AT1G60710.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g26910.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g021880.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.1476.2.S1_at	B	B1S	POPTR_0018s02010	POPTR_0018s02010 (8:222)	NA	NA	Q8VY97	UPF0480 protein At4g32130	AT2G25310.1	Protein of unknown function (DUF2012) 	LOC_Os06g43650.2	"secreted salivary protein, putative, expressed"	Medtr3g137720.1	Carbohydrate-binding-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1479.1.S1_at	B	B1S	POPTR_0002s07880	POPTR_0002s07880 (5:398)	scaffold_2:5415476-5415936(+) (9)	NA	Q9FR99	1-aminocyclopropane-1-carboxylate oxidase	AT1G77330.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g05680.1	"1-aminocyclopropane-1-carboxylate oxidase, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1485.1.S1_at	B	B1A	POPTR_0001s23385	POPTR_0001s23385 (0:187)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1486.1.S1_s_at	B	B1S	POPTR_0009s03280	POPTR_0009s03280 (7:448)	NA	NA	Q42430	Zinc finger protein 1	AT5G59820.1	C2H2-type zinc finger family protein 	LOC_Os03g17150.1	"ZOS3-09 - C2H2 zinc finger protein, expressed"	Medtr7g024970.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1495.1.S1_at	B	B1S	POPTR_0005s05560	POPTR_0005s05560 (0:22)	scaffold_5:3682805-3683242(+) (10)	NA	P13089	Auxin-induced protein AUX28	AT3G04730.1	indoleacetic acid-induced protein 16 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.15.1.S1_at	B	B1S	POPTR_0003s21200	POPTR_0003s21200 (7:366)	NA	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	GO:0010277|chlorophyllide a oxygenase activity	NA
Ptp.1501.1.A1_at	B	B1S	POPTR_0007s13320	POPTR_0007s13320 (7:120)	NA	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G18193.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr5g020890.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.1503.2.S1_at	B	B1S	POPTR_0009s15490	POPTR_0009s15490 (0:344)	NA	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.1504.2.S1_at	B	B1S	POPTR_0004s04320	POPTR_0004s04320 (5:68)	scaffold_4:3089407-3089500(-) (11)	NA	Q42877	DNA-directed RNA polymerase II subunit RPB2	AT4G21710.1	DNA-directed RNA polymerase family protein 	LOC_Os03g44484.2	"DNA-directed RNA polymerase II subunit RPB2, putative, expressed"	Medtr1g028340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1509.1.S1_at	B	B1S	POPTR_0006s12820	POPTR_0006s12820 (8:1488)	NA	NA	NA	NA	AT2G37025.2	TRF-like 8 	LOC_Os02g53670.1	"MYB family transcription factor, putative, expressed"	Medtr1g076560.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.151.1.S1_at	B	B1S	POPTR_0006s20950	POPTR_0006s20950 (8:522)	NA	NA	Q6S001	Kinesin-related protein 11	AT3G12020.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53520.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g112390.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.1514.1.A1_at	B	B1S	POPTR_0009s05050	POPTR_0009s05050 (0:193)	NA	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os09g02830.1	OsMADS78 - MADS-box family gene with M-alpha type-box	Medtr5g048190.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.1515.3.S1_at	B	B1S	POPTR_0010s10140	POPTR_0010s10140 (5:409)	NA	NA	P46293	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1516.2.S1_a_at	B	B1S	POPTR_0001s38470	POPTR_0001s38470 (7:1288)	NA	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1517.2.S1_at	B	B1S	POPTR_0004s04070	POPTR_0004s04070 (7:95)	NA	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233659_18.1	"Stem-specific protein TSJT1, related AC233659.1 80671-78758 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1519.1.S1_at	B	B1S	POPTR_0001s38940	POPTR_0001s38940 (3:43)	NA	NA	Q9CQU8	Mitochondrial inner membrane protease subunit 1	AT1G53530.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os11g40500.3	"OsSigP7 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr8g043500.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1519.3.A1_at	B	B1S	POPTR_0001s38940	POPTR_0001s38940 (5:258)	NA	NA	Q9CQU8	Mitochondrial inner membrane protease subunit 1	AT1G53530.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os11g40500.3	"OsSigP7 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr8g043500.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1541.1.S1_at	B	B2S	POPTR_0006s18230	POPTR_0006s18240 (0:318)//POPTR_0006s18230 (0:318)	NA	NA	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.1551.2.S1_at	B	B1S	POPTR_0001s22980	POPTR_0001s22980 (0:40)	NA	NA	P93171	Calmodulin	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1552.1.S1_x_at	B	B1S	POPTR_0002s20340	POPTR_0002s20340 (2:218)	NA	NA	O24301	Sucrose synthase 2	AT4G02280.1	sucrose synthase 3 	LOC_Os03g22120.1	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
Ptp.1553.1.S1_at	B	B1S	POPTR_0014s05480	POPTR_0014s05480 (3:297)	NA	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1554.1.S1_at	B	B1S	POPTR_0060s00275	POPTR_0060s00275 (0:185)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	NA	GO:0005515|protein binding	NA
Ptp.1557.1.S1_at	B	B1S	POPTR_0001s02100	POPTR_0001s02100 (8:1002)	NA	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr8g077680.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
Ptp.1566.1.S1_at	B	B1S	POPTR_0003s09720	POPTR_0003s09720 (2:356)	NA	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1570.1.S1_at	B	B1S	POPTR_0002s13070	POPTR_0002s13070 (0:197)	NA	NA	Q9SZA7	Probable disease resistance protein At4g33300	AT4G33300.2	ADR1-like 1 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr1g025080.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.158.1.S1_at	B	B1S	POPTR_0012s07480	POPTR_0012s07480 (7:421)	scaffold_12:8393510-8394049(-) (10)	NA	P49914	5-formyltetrahydrofolate cyclo-ligase	AT5G13050.1	5-formyltetrahydrofolate cycloligase 	LOC_Os07g39070.1	"5-formyltetrahydrofolate cyclo-ligase, putative, expressed"	NA	NA	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0030272|5-formyltetrahydrofolate cyclo-ligase activity	NA
Ptp.1586.1.S1_at	B	B1S	POPTR_0014s13900	POPTR_0014s13900 (2:178)	scaffold_14:10165239-10168612(+) (11)	NA	NA	NA	AT2G42610.2	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g111640.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1592.1.A1_at	B	B1S	POPTR_0018s14300	POPTR_0018s14300 (0:95)	NA	NA	Q6Z2W3	Auxin response factor 5	AT1G30330.1	auxin response factor 6 	LOC_Os02g04810.1	"auxin response factor 5, putative, expressed"	Medtr4g161090.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.1597.1.A1_at	B	B1S	POPTR_0015s00690	POPTR_0015s00690 (4:772)	NA	NA	O22315	Pre-mRNA-splicing factor SF2	AT3G49430.3	SER/ARG-rich protein 34A 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr3g122850.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1603.1.A1_at	B	B1S	POPTR_0001s12600	POPTR_0001s12600 (7:506)	NA	NA	Q9ZUM9	Histone-lysine N-methyltransferase ASHR2	AT2G19640.2	ASH1-related protein 2 	LOC_Os08g10470.2	"histone-lysine N-methyltransferase ASHR2, putative, expressed"	Medtr5g027240.1	"Nuclear protein SET; Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.1612.1.A1_at	B	B1S	POPTR_0013s12120	POPTR_0013s12120 (5:2813)	NA	NA	Q7YR70	Angio-associated migratory cell protein	AT1G71840.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g48090.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g134960.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1617.1.A1_at	B	B1S	POPTR_0014s07550	POPTR_0014s07550 (1:364)	NA	NA	Q5R4E0	Methionine adenosyltransferase 2 subunit beta	AT4G00560.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g57990.1	"methionine adenosyltransferase regulatory beta subunit-related, putative, expressed"	Medtr8g034380.1	dTDP-4-dehydrorhamnose reductase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1625.1.A1_at	B	B1S	POPTR_0011s03060	POPTR_0011s03060 (1:62)	NA	NA	Q2V3H0	"Pentatricopeptide repeat-containing protein At4g18975, chloroplastic"	AT4G18975.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g36180.2	"pentatricopeptide, putative, expressed"	Medtr8g147600.1	Immunoglobulin/major histocompatibility complex 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.163.1.S1_at	B	B1S	POPTR_0015s00550	POPTR_0015s00550 (3:402)	NA	NA	Q43047	Caffeic acid 3-O-methyltransferase 3	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.1633.1.A1_at	B	B1S	POPTR_0017s11530	POPTR_0017s11530 (6:177)	NA	NA	Q9LHA4	V-type proton ATPase subunit d2	AT3G28715.1	"ATPase, V0/A0 complex, subunit C/D "	LOC_Os01g40470.1	"vacuolar ATP synthase subunit d, putative, expressed"	Medtr7g009000.1	"H+-transporting two-sector ATPase, C (AC39) subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.1637.1.A1_at	B	B1S	POPTR_0018s11430	POPTR_0018s11430 (8:143)	NA	NA	NA	NA	AT5G57910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16930.1	expressed protein	Medtr8g145180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1642.1.S1_s_at	B	B1S	POPTR_0001s23030	POPTR_0001s23030 (8:854)	NA	NA	Q2V452	CBL-interacting serine/threonine-protein kinase 3	AT2G26980.3	CBL-interacting protein kinase 3 	LOC_Os12g03810.2	"CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g095470.2	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1644.1.A1_at	B	B1S	POPTR_0011s10390	POPTR_0011s10390 (1:547)	NA	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g47530.2	"CGMC_MAPKCMGC_2.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1646.3.A1_at	B	B1S	POPTR_0018s05760	POPTR_0018s05760 (0:82)	NA	NA	NA	NA	AT1G15260.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g158810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1658.1.A1_at	B	B1S	POPTR_0004s09420	POPTR_0004s09420 (5:199)	NA	NA	Q9C9N3	Zinc finger CCCH domain-containing protein 14	AT1G66810.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1659.1.S1_at	B	B1S	POPTR_0016s06570	POPTR_0016s06570 (7:1015)	NA	NA	Q9QXP4	Protein downstream neighbor of Son	AT3G54750.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. 	LOC_Os12g42700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1664.1.A1_at	B	B1S	POPTR_0005s28410	POPTR_0005s28410 (8:468)	NA	NA	P0AEB5	MscS family inner membrane protein ynaI	AT5G10490.2	MSCS-like 2 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
Ptp.1665.2.S1_a_at	B	B1S	POPTR_0015s08040	POPTR_0015s08040 (7:479)	NA	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT5G62580.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1666.1.A1_at	B	B1S	POPTR_0012s00760	POPTR_0012s00760 (5:131)	NA	NA	Q84K00	NAC domain-containing protein 78	AT5G24590.2	TCV-interacting protein 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.1667.1.A1_at	B	B1S	POPTR_0007s09430	POPTR_0007s09430 (8:202)	NA	NA	Q9CSH3	Exosome complex exonuclease RRP44	AT2G17510.1	ribonuclease II family protein 	LOC_Os03g03710.1	"ribonuclease protein, putative, expressed"	Medtr8g087680.1	"Ribonuclease II; Nucleotide binding protein, PINc "	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
Ptp.1668.1.A1_at	B	B1S	POPTR_0002s12800	POPTR_0002s12800 (0:331)	NA	NA	P40781	Protein CYPRO4	AT4G33400.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g08190.1	"CYPRO4, putative, expressed"	Medtr3g147800.1	AMP-dependent synthetase and ligase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1669.1.S1_at	B	B2S	POPTR_0018s12150	POPTR_0018s12150 (8:415)//POPTR_0006s20360 (2:371)	NA	NA	Q92544	Transmembrane 9 superfamily member 4	AT5G35160.2	Endomembrane protein 70 protein family 	LOC_Os02g55440.2	"transmembrane 9 superfamily member, putative, expressed"	Medtr3g107100.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
Ptp.1671.1.A1_at	B	B1S	POPTR_0014s08210	POPTR_0014s08210 (2:1125)	NA	NA	P32260	"Cysteine synthase, chloroplastic/chromoplastic"	AT3G61440.1	cysteine synthase C1 	LOC_Os04g08350.2	"cysteine synthase, chloroplast/chromoplast precursor, putative, expressed"	Medtr7g087780.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.1674.2.A1_at	B	B1S	POPTR_0005s08490	POPTR_0005s08490 (2:433)	NA	NA	P73627	Uncharacterized protein sll1770	AT5G64940.2	ABC2 homolog 13 	LOC_Os02g36570.1	"ABC1 family domain containing protein, putative, expressed"	Medtr3g144970.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.168.1.A1_at	B	B1S	POPTR_0012s07880	POPTR_0012s07880 (0:230)	NA	NA	NA	NA	AT5G50090.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g50810.1	expressed protein	Medtr8g125270.1	"T10O24.15, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1680.1.A1_at	B	B1S	POPTR_0018s00510	POPTR_0018s00510 (1:476)	NA	NA	Q94FY7	"Tocopherol cyclase, chloroplastic"	AT4G32770.1	"tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) "	LOC_Os02g17650.1	"tocopherol cyclase, chloroplast precursor, putative, expressed"	AC225517_3.1	"Tocopherol cyclase, chloroplast precursor, putative AC225517.6 12507-17093 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1685.1.A1_at	B	B1A	POPTR_0015s13140	POPTR_0015s13140 (8:524)	NA	NA	NA	NA	AT5G52280.1	Myosin heavy chain-related protein 	LOC_Os10g36060.1	"protein transport protein-related, putative, expressed"	Medtr5g010660.1	hypothetical protein 	NA	NA	GO:0016020|membrane
Ptp.1693.1.S1_at	B	B1A	POPTR_0004s04790	POPTR_0004s04790 (0:13)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1694.1.S1_at	B	B1S	POPTR_0015s10480	POPTR_0015s10480 (6:77)	NA	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
Ptp.1697.1.S1_at	B	B1S	POPTR_0013s00900	POPTR_0013s00900 (6:74)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1698.1.A1_at	B	B1S	POPTR_0002s06660	POPTR_0002s06660 (0:434)	NA	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.3	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.1703.1.S1_at	B	B1S	POPTR_0008s14890	POPTR_0008s14890 (1:375)	NA	NA	NA	NA	AT5G19260.1	Protein of unknown function (DUF3049) 	LOC_Os03g49830.1	expressed protein	Medtr5g005940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1704.1.A1_at	B	B2S	POPTR_0012s09150	POPTR_0357s00210 (0:404)//POPTR_0012s09150 (2:404)	NA	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os12g27520.1	"serine/threonine-protein kinase AFC2, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.171.1.A1_at	B	B1S	POPTR_0020s00360	POPTR_0020s00360 (7:407)	scaffold_20:443602-444110(-) (11)	NA	O04341	Monothiol glutaredoxin-S9	AT2G30540.1	Thioredoxin superfamily protein 	LOC_Os12g35330.1	OsGrx_C12 - glutaredoxin subgroup III	Medtr7g129910.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.1710.1.A1_at	B	B1S	POPTR_0019s00750	POPTR_0019s00750 (7:460)	NA	NA	P81395	Myb-related protein 330	AT2G16720.1	myb domain protein 7 	LOC_Os05g35500.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1715.1.A1_at	B	B1S	POPTR_0008s14030	POPTR_0008s14030 (6:815)	NA	NA	Q9LKW9	Sodium/hydrogen exchanger 7	AT2G01980.1	"sodium proton exchanger, putative (NHX7) (SOS1) "	LOC_Os12g44360.2	"sodium/hydrogen exchanger 7, putative, expressed"	Medtr2g043140.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
Ptp.1719.1.S1_at	B	B1S	POPTR_0005s04580	POPTR_0005s04580 (8:1590)	NA	NA	Q86SZ2	Trafficking protein particle complex subunit 6B	AT3G05000.1	Transport protein particle (TRAPP) component 	LOC_Os09g06970.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr7g140030.1	"Transport protein particle (TRAPP) component, Bet3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1720.1.A1_at	B	B1S	POPTR_0021s01090	POPTR_0021s01090 (6:773)	NA	NA	Q6DHV7	Adenosine deaminase-like protein	AT4G04880.1	adenosine/AMP deaminase family protein 	LOC_Os07g46630.1	"AMP deaminase, putative, expressed"	Medtr8g146450.1	Adenosine/AMP deaminase 	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
Ptp.1728.1.S1_at	B	B1S	POPTR_0005s17580	POPTR_0005s17580 (4:298)	NA	NA	Q9LTX2	Transport inhibitor response 1-like protein	AT5G49980.1	auxin F-box protein 5 	LOC_Os02g52230.1	"coronatine-insensitive protein 1, putative, expressed"	Medtr5g074580.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1728.1.S1_x_at	B	B1S	POPTR_0005s17580	POPTR_0005s17580 (4:520)	NA	NA	Q9LTX2	Transport inhibitor response 1-like protein	AT5G49980.1	auxin F-box protein 5 	LOC_Os02g52230.1	"coronatine-insensitive protein 1, putative, expressed"	Medtr5g074580.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.173.1.A1_at	B	B1S	POPTR_0004s23540	POPTR_0004s23540 (4:63)	scaffold_4:22225532-22225969(-) (10)	NA	NA	NA	AT1G09610.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1730.1.A1_at	B	B1S	POPTR_0006s00570	POPTR_0006s00570 (3:43)	NA	NA	Q0DCT8	Protein kinase G11A	AT5G47750.1	D6 protein kinase like 2 	LOC_Os08g38320.3	"AGC_PVPK_like_kin82y.14 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1731.1.A1_at	B	B1S	POPTR_0011s00610	POPTR_0011s00610 (4:194)	NA	NA	Q06942	"Naringenin,2-oxoglutarate 3-dioxygenase"	AT4G16330.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g06720.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g094020.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1733.1.A1_at	B	B1S	POPTR_0009s16900	POPTR_0009s16900 (5:455)	NA	NA	NA	NA	AT2G17230.1	EXORDIUM like 5 	LOC_Os06g04250.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1737.2.A1_a_at	B	B1S	POPTR_0005s12505	POPTR_0005s12505 (0:641)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1741.1.A1_at	B	B1S	POPTR_0001s17030	POPTR_0001s17030 (0:222)	NA	NA	P55039	Developmentally-regulated GTP-binding protein 2	AT1G72660.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g28940.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1742.1.A1_at	B	B1S	POPTR_0009s03400	POPTR_0009s03400 (3:599)	NA	NA	NA	NA	AT3G46450.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os03g60610.3	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr4g078780.1	"Cellular retinaldehyde-binding/triple function, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1744.1.S1_at	B	B1S	POPTR_0010s25600	POPTR_0010s25600 (4:132)	NA	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT1G17745.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os06g44460.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
Ptp.1745.1.S1_at	B	B1S	POPTR_0005s11480	POPTR_0005s11480 (0:287)	NA	NA	P83332	Thaumatin-like protein 1	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1751.1.S1_at	B	B1S	POPTR_0002s13960	POPTR_0002s13960 (1:724)	NA	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.1763.1.A1_at	B	B1S	POPTR_0003s14250	POPTR_0003s14250 (7:76)	scaffold_3:14369458-14369585(+) (10)	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.1	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr3g079520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.1764.1.A1_at	B	B1S	POPTR_0011s07200	POPTR_0011s07200 (8:256)	NA	NA	C0LGK9	Probable LRR receptor-like serine/threonine-protein kinase At2g24230	AT5G45800.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g14480.1	"receptor-like kinase, putative, expressed"	Medtr4g134880.1	Tyrosine protein kinase; Ribosomal protein S2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1765.1.A1_at	B	B1S	POPTR_0018s04850	POPTR_0018s04850 (6:487)	NA	NA	Q5XD45	Putative hydrolase M6_Spy0533	AT2G25870.1	haloacid dehalogenase-like hydrolase family protein 	LOC_Os01g53720.2	expressed protein	Medtr1g008360.1	"Protein of unknown function UPF0054; HAD-superfamily hydrolase subfamily IIB; Zinc finger, C2H2-type "	GO:0008152|metabolic process	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.1772.1.A1_at	B	B1S	POPTR_0018s01990	POPTR_0018s01990 (5:274)	NA	NA	Q949Y3	Bifunctional purple acid phosphatase 26	AT5G34850.1	purple acid phosphatase 26 	LOC_Os06g43640.2	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
Ptp.178.1.S1_at	B	B1A	POPTR_0003s06940	POPTR_0003s06940 (7:468)	NA	NA	O65351	Subtilisin-like protease	AT3G14240.1	Subtilase family protein 	LOC_Os08g35090.1	"OsSub56 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1792.1.A1_at	B	B1S	POPTR_0003s11770	POPTR_0003s11770 (8:1047)	NA	NA	NA	NA	AT4G22860.1	Cell cycle regulated microtubule associated protein 	LOC_Os06g03980.1	expressed protein	Medtr5g011520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1796.1.A1_at	B	B1S	POPTR_0003s16760	POPTR_0003s16760 (0:443)	NA	NA	NA	NA	AT1G24265.2	Protein of unknown function (DUF1664) 	LOC_Os01g01070.2	expressed protein	Medtr7g022170.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1803.1.A1_at	B	B1S	POPTR_0014s10910	POPTR_0014s10910 (0:224)	NA	NA	NA	NA	AT1G49920.1	MuDR family transposase 	LOC_Os06g42640.3	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0008270|zinc ion binding	NA
Ptp.1809.1.A1_at	B	B1S	POPTR_0001s17970	POPTR_0001s17970 (8:362)	NA	NA	Q55E69	Protein SYS1 homolog	AT1G79990.1	structural molecules 	LOC_Os01g41040.1	"SCF apoptosis response protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1817.1.A1_at	B	B1S	POPTR_0001s07730	POPTR_0001s07730 (6:319)	NA	NA	A7YVD7	"UPF0551 protein C8orf38 homolog, mitochondrial"	AT1G62730.1	Terpenoid synthases superfamily protein 	LOC_Os06g01470.1	"AGAP000326-PA, putative, expressed"	Medtr5g012220.1	"UPF0551 protein C8orf38 homolog, related "	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
Ptp.182.1.S1_at	B	B1S	POPTR_0010s10590	POPTR_0010s10590 (2:113)	NA	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT1G24030.2	Protein kinase superfamily protein 	LOC_Os09g20880.2	"serine/threonine-protein kinase, putative, expressed"	Medtr5g036300.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1821.1.A1_at	B	B1S	POPTR_0001s00440	POPTR_0001s00440 (3:578)	NA	NA	P22988	L-lactate dehydrogenase A	AT4G17260.1	Lactate/malate dehydrogenase family protein 	LOC_Os02g01510.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g012480.1	L-lactate/malate dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.1831.1.A1_at	B	B1S	POPTR_0008s06410	POPTR_0008s06410 (1:214)	NA	NA	P44797	Adenylosuccinate lyase	AT4G18440.1	L-Aspartase-like family protein 	LOC_Os03g19930.1	"adenylosuccinate lyase, putative, expressed"	Medtr7g111520.1	Fumarate lyase; Adenylosuccinate lyase 	GO:0044281|small molecule metabolic process||GO:0006188|IMP biosynthetic process	"GO:0004018|""N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"""	NA
Ptp.1836.1.A1_at	B	B1A	POPTR_0016s05010	POPTR_0016s05010 (4:317)	NA	NA	Q05091	Polygalacturonase inhibitor	AT5G06860.1	polygalacturonase inhibiting protein 1 	LOC_Os05g01444.1	"polygalacturonase inhibitor precursor, putative, expressed"	Medtr7g111410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.1844.1.A1_at	B	B1S	POPTR_0017s00410	POPTR_0017s00410 (8:377)	NA	NA	Q9M1Y3	F-box/ankyrin repeat protein SKIP35	AT3G59910.1	Ankyrin repeat family protein 	LOC_Os11g14180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1845.1.A1_s_at	B	B1S	POPTR_0001s47010	POPTR_0001s47010 (8:105)	NA	NA	Q7ZWM6	Obg-like ATPase 1	AT1G30580.1	GTP binding 	LOC_Os08g09940.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1847.1.A1_at	B	B1S	POPTR_0007s09950	POPTR_0007s09950 (0:111)	NA	NA	Q08466	Casein kinase II subunit alpha-2	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1853.1.A1_at	B	B1S	POPTR_0016s04440	POPTR_0016s04440 (3:207)	NA	NA	P93740	"Nudix hydrolase 23, chloroplastic"	AT2G42070.1	nudix hydrolase homolog 23 	LOC_Os09g38040.1	"hydrolase, NUDIX family protein, expressed"	Medtr7g111980.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.1855.1.S1_at	B	B2S	POPTR_0006s09840	POPTR_0006s09840 (3:122)//POPTR_0958s00200 (0:12)	scaffold_6:7238155-7238438(+) (10)//scaffold_958:8095-8367(+) (9)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g078230.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1859.1.A1_at	B	B1S	POPTR_0005s18550	POPTR_0005s18550 (0:431)	NA	NA	Q9FGQ7	Cyclin-D3-2	AT5G67260.1	CYCLIN D3;2 	LOC_Os07g42860.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.1862.1.A1_at	B	B1S	POPTR_0016s13780	POPTR_0016s13780 (3:730)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1864.1.A1_a_at	B	B1S	POPTR_0016s11950	POPTR_0016s11950 (1:212)	NA	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr4g012530.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1867.1.A1_at	B	B1S	POPTR_0006s03880	POPTR_0006s03880 (2:210)	NA	NA	NA	NA	AT3G56750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41150.2); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g25110.1	expressed protein	Medtr4g155950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.187.1.A1_at	B	B1S	POPTR_0004s20090	POPTR_0004s20090 (8:559)	NA	NA	Q12830	Nucleosome-remodeling factor subunit BPTF	AT5G22760.1	PHD finger family protein 	LOC_Os11g05130.1	"PHD-finger family protein, expressed"	Medtr4g073860.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1870.1.A1_at	B	B1S	POPTR_0008s13840	POPTR_0008s13840 (8:1223)	NA	NA	NA	NA	AT1G68080.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g13550.1	"oxidoreductase, putative, expressed"	AC146550_12.1	"oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, putative AC146550.40 43818-43015 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1875.2.S1_at	B	B1S	POPTR_0010s22490	POPTR_0010s22490 (4:307)	NA	NA	Q4V9P0	S-adenosylmethionine mitochondrial carrier protein	AT2G35800.1	mitochondrial substrate carrier family protein 	LOC_Os11g01270.1	"mitochondrial substrate carrier family protein, putative, expressed"	Medtr1g122080.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.189.1.A1_at	B	B1S	POPTR_0007s01350	POPTR_0007s01350 (1:107)	NA	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.190.1.A1_at	B	B3S	POPTR_0015s15040	POPTR_0015s15040 (7:412)//POPTR_0015s15090 (7:412)//POPTR_0113s00200 (5:379)	NA	NA	Q5S2C4	Protein NAP1	AT2G35110.2	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1904.1.A1_at	B	B1S	POPTR_0010s06300	POPTR_0010s06300 (7:730)	NA	NA	NA	NA	AT2G35880.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os06g40450.3	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1905.1.A1_at	B	B1S	POPTR_0016s06420	POPTR_0016s06420 (8:998)	NA	NA	NA	NA	AT5G06590.1	unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g42840.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1907.1.A1_at	B	B1S	POPTR_0006s26200	POPTR_0006s26200 (0:19)	scaffold_6:24468236-24470772(-) (9)	NA	NA	NA	AT1G60560.1	SWIM zinc finger family protein 	LOC_Os07g12520.1	"zinc ion binding protein, putative, expressed"	Medtr8g047590.1	"Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.1911.1.A1_at	B	B1S	POPTR_0001s14820	POPTR_0001s14820 (3:123)	NA	NA	Q9LMP7	Golgi SNARE 11 protein	AT1G15880.1	golgi snare 11 	LOC_Os08g34140.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr4g022490.1	Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1915.1.S1_at	B	B1S	POPTR_0004s07390	POPTR_0004s07390 (2:380)	NA	NA	Q54ZW0	Putative phagocytic receptor 1b	AT5G37310.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
Ptp.1916.1.A1_at	B	B1S	POPTR_0006s15970	POPTR_0006s15970 (6:516)	NA	NA	NA	NA	AT1G11020.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os08g29590.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g119280.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1917.1.A1_s_at	B	B1S	POPTR_0009s14910	POPTR_0009s14910 (3:65)	scaffold_9:11591634-11591859(+) (11)	NA	Q0DCT8	Protein kinase G11A	AT2G36350.1	Protein kinase superfamily protein 	LOC_Os12g29580.1	"AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g016740.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1918.1.A1_at	B	B1S	POPTR_0009s09030	POPTR_0009s09030 (4:276)	scaffold_9:8121858-8122404(+) (9)	NA	NA	NA	AT2G14680.3	myosin heavy chain-related 	LOC_Os03g31730.1	expressed protein	Medtr5g005400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1919.1.A1_at	B	B1S	POPTR_0004s14830	POPTR_0004s14830 (6:286)	NA	NA	Q9LJK3	LAG1 longevity assurance homolog 2	AT3G19260.1	LAG1 homologue 2 	LOC_Os03g15750.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
Ptp.1931.1.A1_at	B	B1S	POPTR_0007s13300	POPTR_0007s13300 (3:555)	NA	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT5G17760.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr5g020890.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.1933.1.A1_at	B	B1S	POPTR_0019s13500	POPTR_0019s13500 (4:421)	NA	NA	Q9SKT3	Secretory carrier-associated membrane protein 1	AT2G20840.1	Secretory carrier membrane protein (SCAMP) family protein 	LOC_Os07g37740.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
Ptp.1939.1.S1_at	B	B1S	POPTR_0015s14030	POPTR_0015s14030 (7:504)	NA	NA	Q39111	Gibberellin 20 oxidase 2	AT5G51810.1	gibberellin 20 oxidase 2 	LOC_Os03g63970.1	"gibberellin 20 oxidase 1, putative, expressed"	Medtr1g129980.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1942.1.S1_at	B	B1S	POPTR_0008s00270	POPTR_0008s00270 (4:254)	NA	NA	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1961.1.A1_at	B	B3S	POPTR_0146s00210	POPTR_0012s01980 (0:2422)//POPTR_0146s00220 (0:2026)//POPTR_0146s00210 (1:202)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1966.1.S1_at	B	B1S	POPTR_0010s22380	POPTR_0010s22380 (8:1139)	scaffold_10:19330637-19331858(+) (9)	NA	Q9H0Z9	RNA-binding protein 38	AT3G54770.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g17760.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g041420.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.1974.1.S1_s_at	B	B1S	POPTR_0001s29450	POPTR_0001s29450 (8:458)	scaffold_1:28117520-28122289(-) (9)	NA	Q9NX01	Thioredoxin-like protein 4B	AT3G24730.1	"mRNA splicing factor, thioredoxin-like U5 snRNP "	LOC_Os11g19220.1	"mitosis protein dim1, putative, expressed"	Medtr3g133440.1	Thioredoxin fold 	GO:0007067|mitosis	NA	GO:0005681|spliceosomal complex
Ptp.1981.1.S1_at	B	B1S	POPTR_0001s37750	POPTR_0001s37750 (0:1004)	NA	NA	NA	NA	AT5G55850.1	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1988.1.S1_at	B	B1S	POPTR_0009s05670	POPTR_0009s05670 (8:226)	NA	NA	P51104	Dihydroflavonol-4-reductase	AT1G51410.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1990.2.S1_at	B	B1S	POPTR_0019s12210	POPTR_0019s12210 (6:955)	NA	NA	Q6Z7L8	Rac-like GTP-binding protein 7	AT1G75840.1	RAC-like GTP binding protein 5 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1992.1.A1_at	B	B1S	POPTR_0007s05490	POPTR_0007s05490 (0:119)	NA	NA	Q9XEE2	Annexin D2	AT5G65020.1	annexin 2 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
Ptp.1993.1.S1_at	B	B1S	POPTR_0014s07490	POPTR_0014s07490 (7:418)	scaffold_14:5632255-5632756(-) (10)	NA	NA	NA	AT3G61200.1	Thioesterase superfamily protein 	LOC_Os07g27870.1	"thioesterase family protein, putative, expressed"	Medtr8g034300.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2011.1.S1_at	B	B1S	POPTR_0006s05780	POPTR_0006s05780 (8:320)	NA	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT3G57880.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr7g111440.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2023.1.S1_at	B	B1S	POPTR_0006s01890	POPTR_0006s01890 (0:113)	NA	NA	NA	NA	AT4G16400.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.203.2.A1_at	B	B1S	POPTR_0008s04070	POPTR_0008s04070 (0:20)	NA	NA	Q12893	Transmembrane protein 115	AT3G07950.1	rhomboid protein-related 	LOC_Os03g24390.1	"OsRhmbd8 - Putative Rhomboid homologue, expressed"	Medtr1g121420.1	"Transmembrane protein 115, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2030.1.S1_at	B	B1S	POPTR_0011s15130	POPTR_0011s15130 (5:108)	NA	NA	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2038.1.S1_at	B	B1S	POPTR_0018s01620	POPTR_0018s01620 (5:578)	NA	NA	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.2041.1.S1_at	B	B1S	POPTR_0006s01680	POPTR_0006s01680 (8:1245)	NA	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.2042.1.S1_at	B	B1S	POPTR_0009s07950	POPTR_0009s07950 (5:350)	NA	NA	P93028	Ubiquitin-activating enzyme E1 1	AT2G30110.1	ubiquitin-activating enzyme 1 	LOC_Os11g01510.3	"ubiquitin-activating enzyme, putative, expressed"	Medtr5g080760.1	"Ubiquitin-activating enzyme, E1; Lipase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
Ptp.2043.1.S1_at	B	B1S	POPTR_0012s07730	POPTR_0012s07730 (7:204)	NA	NA	Q9S795	"Betaine aldehyde dehydrogenase 1, chloroplastic"	AT1G74920.1	aldehyde dehydrogenase 10A8 	LOC_Os04g39020.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125020.1	"Betaine aldehyde dehydrogenase 1, chloroplast precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.2045.1.S1_at	B	B1S	POPTR_0011s09720	POPTR_0011s09720 (7:190)	NA	NA	Q8LEM7	Calcineurin B-like protein 3	AT4G26570.1	calcineurin B-like 3 	LOC_Os03g42840.1	"calcineurin B, putative, expressed"	Medtr5g104010.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2047.2.A1_at	B	B1S	POPTR_0001s10040	POPTR_0001s10040 (0:104)	NA	NA	Q9SH59	Reticulon-like protein B3	AT1G64090.1	Reticulan like protein B3 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.2059.1.S1_at	B	B1S	POPTR_0013s02620	POPTR_0013s02620 (6:302)	NA	NA	Q6B4J5	Spore coat assembly protein exsA	AT5G19090.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.206.1.A1_at	B	B1S	POPTR_0008s14330	POPTR_0008s14330 (6:946)	scaffold_8:9496833-9499941(-) (10)	NA	NA	NA	AT2G02170.2	Remorin family protein 	LOC_Os02g02500.1	"remorin family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2067.1.S1_at	B	B1S	POPTR_0015s07420	POPTR_0015s07420 (6:230)	scaffold_15:8626171-8626503(+) (11)	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os02g51290.1	"HVA22, putative, expressed"	Medtr8g112530.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2070.2.S1_at	B	B1S	POPTR_0001s34530	POPTR_0001s34530 (8:227)	NA	NA	Q96PB1	CAS1 domain-containing protein 1	AT2G34410.2	O-acetyltransferase family protein 	LOC_Os01g44040.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2074.1.S1_at	B	B1S	POPTR_0006s21260	POPTR_0006s21260 (8:342)	NA	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.2	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.2	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.2075.1.S1_at	B	B1S	POPTR_0010s07880	POPTR_0010s07880 (7:2810)	NA	NA	O22683	Cyanate hydratase	AT3G23490.1	cyanase 	LOC_Os10g33270.1	"cyanate hydratase, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0009439|cyanate metabolic process	GO:0008824|cyanate hydratase activity	NA
Ptp.2082.1.S1_at	B	B1S	POPTR_0002s06070	POPTR_0002s06070 (7:529)	NA	NA	P08965	Meiosis protein mei2	AT1G29400.2	MEI2-like protein 5 	LOC_Os02g48790.2	"AML1, putative, expressed"	Medtr2g056620.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.2099.1.S1_at	B	B1S	POPTR_0008s09430	POPTR_0008s09430 (1:225)	NA	NA	Q7Z494	Nephrocystin-3	AT3G27960.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g125600.1	"kinesin light chain-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2100.1.S1_s_at	B	B1S	POPTR_0001s21370	POPTR_0001s21370 (1:133)	scaffold_1:19784562-19787965(+) (10)	NA	Q6NVS2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT1G36050.1	Endoplasmic reticulum vesicle transporter protein 	LOC_Os04g38340.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2105.1.S1_at	B	B1S	POPTR_0016s13970	POPTR_0016s13970 (6:834)	NA	NA	Q94AL9	"Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial"	AT2G38400.1	alanine:glyoxylate aminotransferase 3 	LOC_Os05g39770.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2113.1.S1_at	B	B1S	POPTR_0008s17490	POPTR_0008s17490 (5:812)	NA	NA	NA	NA	AT3G23980.1	BLISTER 	LOC_Os01g68380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2117.1.S1_s_at	B	B1S	POPTR_0003s15960	POPTR_0003s15960 (3:115)	scaffold_3:15607270-15607520(-) (11)	NA	Q9M2F1	40S ribosomal protein S27-2	AT3G61110.1	ribosomal protein S27 	LOC_Os04g27860.1	"40S ribosomal protein S27, putative"	Medtr2g019110.1	Ribosomal protein S27E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2118.1.S1_at	B	B1S	POPTR_0009s14000	POPTR_0009s14000 (3:109)	NA	NA	Q9SZN1	V-type proton ATPase subunit B2	AT4G38510.5	"ATPase, V1 complex, subunit B protein "	LOC_Os01g51380.2	"ATP synthase, putative, expressed"	Medtr7g092560.1	ATPase FliI/YscN 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.212.2.A1_at	B	B2S	POPTR_0011s05830	POPTR_0011s05830 (2:566)//POPTR_0011s05800 (1:195)	NA	NA	O23661	Auxin response factor 3	AT2G33860.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os01g48060.3	"auxin response factor, putative, expressed"	Medtr2g018270.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.2126.1.S1_at	B	B1S	POPTR_0013s10300	POPTR_0013s10300 (5:1506)	scaffold_13:10326730-10328433(-) (11)	NA	P00052	Cytochrome c	AT4G10040.1	cytochrome c-2 	LOC_Os05g34770.1	"cytochrome c, putative, expressed"	Medtr5g008520.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2126.1.S1_x_at	B	B1S	POPTR_0013s10300	POPTR_0013s10300 (3:1506)	scaffold_13:10326730-10328433(-) (11)	NA	P00052	Cytochrome c	AT4G10040.1	cytochrome c-2 	LOC_Os05g34770.1	"cytochrome c, putative, expressed"	Medtr5g008520.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.213.2.A1_at	B	B1S	POPTR_0010s13010	POPTR_0010s13010 (8:502)	NA	NA	NA	NA	AT2G01220.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g49670.1	"cytidylyltransferase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2134.1.A1_at	B	B1S	POPTR_0010s08900	POPTR_0010s08900 (4:330)	scaffold_10:9697343-9698235(-) (9)	NA	Q09867	rRNA-processing protein efg1	AT1G04230.1	Protein of unknown function (DUF2361) 	LOC_Os03g58340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2136.1.S1_at	B	B1S	POPTR_0007s13020	POPTR_0007s13020 (8:534)	NA	NA	Q9ZPW3	Transcription factor bHLH64	AT2G18300.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g32510.2	"BHLH transcription factor, putative, expressed"	Medtr3g162340.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.2138.1.S1_at	B	B1S	POPTR_0003s16960	POPTR_0003s16960 (8:31)	NA	NA	NA	NA	AT1G27330.1	Ribosome associated membrane protein RAMP4 	LOC_Os11g41875.2	"membrane protein, putative, expressed"	Medtr2g030550.1	Ribosome associated membrane RAMP4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2144.1.A1_at	B	B1S	POPTR_0008s11890	POPTR_0008s11890 (6:541)	NA	NA	Q9S7Y7	Alpha-xylosidase	AT1G68560.1	alpha-xylosidase 1 	LOC_Os01g03950.1	"glycosyl hydrolase, family 31, putative, expressed"	Medtr5g066370.1	"Glycoside hydrolase, family 31 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2146.1.S1_at	B	B2S	POPTR_0005s25060	POPTR_0005s25060 (8:868)//POPTR_0002s03550 (3:833)	NA	NA	Q54JC2	Uncharacterized protein DDB_G0288155	AT1G19580.1	gamma carbonic anhydrase 1 	LOC_Os12g07220.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
Ptp.2147.3.S1_at	B	B1S	POPTR_0014s13760	POPTR_0014s13760 (5:226)	NA	NA	Q84Y95	"Monothiol glutaredoxin-S14, chloroplastic"	AT3G54900.1	CAX interacting protein 1 	LOC_Os03g63420.1	"OsGrx_S14 - glutaredoxin subgroup II, expressed"	Medtr7g089300.1	Glutaredoxin-related protein; Glutaredoxin active site 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.215.1.A1_at	B	B1S	POPTR_0004s10100	POPTR_0004s10100 (7:180)	NA	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g024690.1	"Protein kinase; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.2154.1.A1_at	B	B1S	POPTR_0006s00900	POPTR_0006s00900 (4:511)	NA	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21790.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g097770.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2155.1.S1_at	B	B1S	POPTR_0001s39950	POPTR_0001s39950 (0:445)	NA	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.2175.1.S1_at	B	B1S	POPTR_0002s07520	POPTR_0002s07520 (0:330)	NA	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2180.1.S1_at	B	B1S	POPTR_0005s07290	POPTR_0005s07290 (3:437)	scaffold_5:4939977-4940490(+) (11)	NA	P46668	Homeobox-leucine zipper protein ATHB-6	AT2G22430.1	homeobox protein 6 	LOC_Os09g29460.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g102220.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2189.2.S1_at	B	B1S	POPTR_0001s10710	POPTR_0001s10710 (5:202)	NA	NA	Q39828	Dynamin-related protein 5A	AT5G42080.1	dynamin-like protein 	LOC_Os05g48240.1	"dynamin family protein, putative, expressed"	Medtr5g009190.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.2190.1.S1_at	B	B1S	POPTR_0001s25170	POPTR_0001s25170 (4:448)	NA	NA	P50165	Tropinone reductase homolog	AT2G29260.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.2195.1.S1_at	B	B1S	POPTR_0001s19120	POPTR_0001s19120 (6:1314)	NA	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os01g53880.6	"OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.2199.2.A1_a_at	B	B1S	POPTR_0012s05260	POPTR_0012s05260 (7:1122)	NA	NA	Q6YYA3	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT3G18390.1	CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os05g47850.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr6g028390.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
Ptp.2208.1.S1_at	B	B1S	POPTR_0001s25620	POPTR_0001s25620 (0:385)	NA	NA	Q9FIM2	"ATP-dependent zinc metalloprotease FTSH 9, chloroplastic"	AT5G58870.1	FTSH protease 9 	LOC_Os02g43350.1	"OsFtsH7  FtsH protease, homologue of AtFtsH7, expressed"	Medtr5g078300.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.2209.1.S1_at	B	B1S	POPTR_0006s14370	POPTR_0006s14370 (6:403)	scaffold_6:11730492-11730967(+) (9)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.221.1.S1_s_at	B	B1S	POPTR_0017s13100	POPTR_0017s13100 (8:31)	NA	NA	Q54KZ8	Eukaryotic translation initiation factor 3 subunit M	AT5G15610.1	Proteasome component (PCI) domain protein 	LOC_Os04g01290.1	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2217.1.S1_at	B	B1S	POPTR_0010s26070	POPTR_0010s26070 (0:322)	NA	NA	Q9FWR2	Pyrophosphate-energized membrane proton pump 3	AT1G16780.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g33490.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.2231.1.S1_at	B	B2S	POPTR_0019s13640	POPTR_0019s13640 (0:844)//POPTR_0063s00200 (0:714)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2232.1.S1_at	B	B1S	POPTR_0002s10410	POPTR_0002s10410 (6:105)	NA	NA	Q892R1	Chaperone protein dnaJ	AT2G33735.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g52270.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g074940.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.2243.1.S1_at	B	B1S	POPTR_0009s16750	POPTR_0009s16750 (7:735)	NA	NA	Q9UMX0	Ubiquilin-1	AT2G17200.1	ubiquitin family protein 	LOC_Os10g39620.2	"ubiquitin family protein, putative, expressed"	Medtr5g023730.1	UV excision repair protein Rad23; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2247.1.S1_at	B	B1S	POPTR_0017s11520	POPTR_0017s11520 (8:386)	NA	NA	Q91WQ5	TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	NA	NA	LOC_Os01g09020.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g047810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2249.1.A1_at	B	B1S	POPTR_0018s03030	POPTR_0018s03030 (5:327)	NA	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g40818.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.225.1.A1_at	B	B1S	POPTR_0003s15620	POPTR_0003s15620 (0:343)	NA	NA	NA	NA	AT4G20300.2	Protein of unknown function (DUF1639) 	LOC_Os01g48830.2	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2261.1.S1_at	B	B1S	POPTR_0007s11750	POPTR_0007s11750 (7:608)	NA	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23610.1	methyl esterase 3 	LOC_Os05g30760.1	"esterase, putative, expressed"	Medtr5g018350.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2262.1.S1_x_at	B	B1S	POPTR_0010s22990	POPTR_0010s22990 (5:240)	NA	NA	Q9FGZ9	Ubiquitin-like protein 5	AT5G42300.1	ubiquitin-like protein 5 	LOC_Os02g41820.1	expressed protein	Medtr3g105020.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2265.1.S1_at	B	B3S	POPTR_0002s22940	POPTR_0008s23290 (0:130)//POPTR_0002s22940 (0:130)//POPTR_0059s00200 (0:130)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2272.1.A1_at	B	B1S	POPTR_0014s11790	POPTR_0014s11790 (3:100)	NA	NA	P38661	Probable protein disulfide-isomerase A6	AT2G47470.1	thioredoxin family protein 	LOC_Os05g06430.2	"OsPDIL2-1  protein disulfide isomerase PDIL2-1, expressed"	Medtr1g107440.1	"Thioredoxin-related; Thioredoxin domain 2; Endoplasmic reticulum ERp29, C-terminal; "	GO:0045454|cell redox homeostasis	NA	GO:0005783|endoplasmic reticulum
Ptp.2273.1.S1_at	B	B1S	POPTR_0001s25760	POPTR_0001s25760 (8:462)	NA	NA	P0A5R8	Phospholipase C 4	AT1G07230.1	non-specific phospholipase C1 	LOC_Os03g61130.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.2277.1.S1_at	B	B1S	POPTR_0016s06670	POPTR_0016s06670 (6:1001)	NA	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.3	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.228.1.A1_at	B	B1S	POPTR_0014s18740	POPTR_0014s18740 (8:448)	NA	NA	Q86UA1	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2284.1.S1_at	B	B1S	POPTR_0001s22350	POPTR_0001s22350 (5:402)	NA	NA	NA	NA	AT5G22090.2	Protein of unknown function (DUF3049) 	LOC_Os03g49830.1	expressed protein	Medtr4g067120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2285.1.S1_at	B	B1S	POPTR_0017s10630	POPTR_0017s10630 (3:44)	NA	NA	Q9FJI5	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
Ptp.2294.1.S1_at	B	B1S	POPTR_0005s08840	POPTR_0005s08840 (8:458)	NA	NA	B9H5L9	"Lipoyl synthase, mitochondrial"	AT2G20860.1	lipoic acid synthase 1 	LOC_Os04g38330.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
Ptp.2296.1.A1_at	B	B1S	POPTR_0016s05880	POPTR_0016s05880 (2:549)	NA	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os01g61420.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2302.1.S1_at	B	B1S	POPTR_0014s02550	POPTR_0014s02550 (1:189)	NA	NA	P42731	Polyadenylate-binding protein 2	AT4G34110.1	poly(A) binding protein 2 	LOC_Os04g42600.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
Ptp.2312.1.A1_at	B	B1S	POPTR_0004s11790	POPTR_0004s11790 (7:959)	NA	NA	Q42290	Probable mitochondrial-processing peptidase subunit beta	AT3G02090.1	Insulinase (Peptidase family M16) protein 	LOC_Os03g11410.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.2315.3.S1_at	B	B1S	POPTR_0004s15610	POPTR_0004s15610 (5:91)	NA	NA	NA	NA	AT3G50830.1	cold-regulated 413-plasma membrane 2 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2321.1.A1_at	B	B1S	POPTR_0002s24110	POPTR_0002s24110 (7:357)	NA	NA	Q9R0X4	"Acyl-coenzyme A thioesterase 9, mitochondrial"	AT5G48370.2	Thioesterase/thiol ester dehydrase-isomerase superfamily protein 	LOC_Os09g34190.1	"acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed"	Medtr7g092460.1	"Acyl-coenzyme A thioesterase 9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2324.1.A1_at	B	B1S	POPTR_0007s13060	POPTR_0007s13060 (0:168)	NA	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G66530.2	Galactose mutarotase-like superfamily protein 	LOC_Os09g15820.1	"aldose 1-epimerase, putative, expressed"	Medtr5g020530.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.2325.1.S1_s_at	B	B1S	POPTR_0001s27480	POPTR_0001s27480 (4:160)	NA	NA	O22342	"ADP,ATP carrier protein 1, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2326.1.S1_s_at	B	B1S	POPTR_0001s27540	POPTR_0001s27540 (2:209)	scaffold_1:26437721-26438175(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2336.1.S1_at	B	B1S	POPTR_0002s17740	POPTR_0002s17740 (5:163)	NA	NA	Q54Y72	Rho GTPase-activating protein gacA	AT2G46710.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os02g45600.1	"rhoGAP domain containing protein, expressed"	Medtr8g029150.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.2346.1.S1_at	B	B1S	POPTR_0017s14470	POPTR_0017s14470 (0:314)	NA	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
Ptp.2349.1.A1_at	B	B1S	POPTR_0009s13280	POPTR_0009s13280 (6:1431)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2350.1.S1_at	B	B1S	POPTR_0017s11670	POPTR_0017s11670 (7:1664)	NA	NA	Q2NI00	3-dehydroquinate synthase	AT3G28760.2	"CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os03g07420.1	"3-dehydroquinate synthase, putative, expressed"	Medtr1g047300.1	3-Dehydroquinate synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2351.1.S1_s_at	B	B1S	POPTR_0018s13940	POPTR_0018s13940 (8:170)	scaffold_18:14212695-14215554(-) (11)	NA	NA	NA	AT4G30010.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g07910.2	"fiber protein Fb15, putative, expressed"	Medtr2g042700.1	"fiber protein Fb15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2352.1.A1_at	B	B3S	POPTR_0003s05570	POPTR_0003s05580 (4:467)//POPTR_0003s05570 (7:466)//POPTR_0003s05590 (3:462)	NA	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G67150.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g01980.1	"transferase family protein, putative, expressed"	Medtr4g023990.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.2356.1.A1_at	B	B1S	POPTR_0006s26810	POPTR_0006s26810 (8:345)	NA	NA	O48946	Cellulose synthase A catalytic subunit 1 [UDP-forming]	AT4G32410.1	cellulose synthase 1 	LOC_Os05g08370.1	"CESA1 - cellulose synthase, expressed"	Medtr3g136720.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.2362.1.A1_at	B	B1S	POPTR_0010s05680	POPTR_0010s05680 (8:446)	NA	NA	NA	NA	AT1G67910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). 	NA	NA	Medtr8g081780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.237.1.S1_s_at	B	B1S	POPTR_0004s23490	POPTR_0004s23490 (7:58)	NA	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.2384.1.S1_at	B	B1S	POPTR_0015s00390	POPTR_0015s00390 (7:487)	NA	NA	NA	NA	AT4G01575.1	"serine protease inhibitor, Kazal-type family protein "	LOC_Os01g59610.1	"KAZ1 - Kazal-type serine protease inhibitor precursor, expressed"	Medtr3g122130.1	"serine protease inhibitor, Kazal-type family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2385.1.S1_at	B	B1S	POPTR_0007s14670	POPTR_0007s14670 (0:387)	NA	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
Ptp.239.1.A1_at	B	B1S	POPTR_0010s07850	POPTR_0010s07850 (4:125)	NA	NA	P31049	Uncharacterized methyltransferase in lpd-3 5'region	AT3G23530.1	Cyclopropane-fatty-acyl-phospholipid synthase 	LOC_Os12g16650.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr1g064910.1	Cyclopropane-fatty-acyl-phospholipid synthase 	GO:0008610|lipid biosynthetic process	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity||GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
Ptp.2390.1.A1_at	B	B1S	POPTR_0003s05520	POPTR_0003s05520 (6:755)	NA	NA	NA	NA	AT1G80000.2	CASC3/Barentsz eIF4AIII binding 	LOC_Os01g41190.2	"glycine-rich protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2390.2.A1_s_at	B	B1S	POPTR_0003s05520	POPTR_0003s05520 (7:810)	NA	NA	NA	NA	AT1G80000.2	CASC3/Barentsz eIF4AIII binding 	LOC_Os01g41190.2	"glycine-rich protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2391.1.A1_at	B	B1S	POPTR_0004s22020	POPTR_0004s22020 (6:497)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.240.1.S1_at	B	B1S	POPTR_0017s00350	POPTR_0017s00350 (8:939)	NA	NA	Q8LB01	"Dihydrodipicolinate reductase 2, chloroplastic"	AT3G59890.2	"Dihydrodipicolinate reductase, bacterial/plant "	LOC_Os02g24020.1	"dihydrodipicolinate reductase, putative, expressed"	Medtr4g125890.1	Dihydrodipicolinate reductase 	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009089|lysine biosynthetic process via diaminopimelate||GO:0044281|small molecule metabolic process	GO:0008839|dihydrodipicolinate reductase activity	NA
Ptp.2401.1.S1_s_at	B	B1S	POPTR_0004s22050	POPTR_0004s22050 (7:428)	scaffold_4:20985423-20985896(-) (11)	NA	NA	NA	AT2G28410.1	unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g110400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2403.1.S1_at	B	B1S	POPTR_0001s15290	POPTR_0001s15290 (8:356)	NA	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2405.1.S1_at	B	B1S	POPTR_0010s07530	POPTR_0010s07530 (2:817)	NA	NA	NA	NA	AT4G13450.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os10g32590.1	"universal stress protein domain containing protein, putative, expressed"	Medtr4g136730.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.2407.1.S1_at	B	B1S	POPTR_0005s08260	POPTR_0005s08260 (7:512)	NA	NA	Q9NQG5	Regulation of nuclear pre-mRNA domain-containing protein 1B	AT5G65180.1	ENTH/VHS family protein 	LOC_Os04g54420.1	"protein of unknown function, DUF618 domain containing protein, expressed"	Medtr3g101010.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2410.1.S1_at	B	B3S	POPTR_1388s00200	POPTR_1388s00200 (5:170)//POPTR_1388s00210 (5:170)//POPTR_0014s13220 (0:64)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2411.1.S1_at	B	B1S	POPTR_0004s16070	POPTR_0004s16070 (2:167)	scaffold_4:16527515-16528272(+) (10)	NA	Q8VY05	SWI/SNF complex subunit SWI3D	AT4G34430.3	DNA-binding family protein 	LOC_Os03g51220.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed"	Medtr4g095380.1	"Zinc finger, ZZ-type; SWIRM; Homeodomain-related "	NA	GO:0008270|zinc ion binding	NA
Ptp.2422.1.S1_at	B	B1S	POPTR_0014s11830	POPTR_0014s11830 (0:146)	NA	NA	Q54V77	CTP synthase	AT4G02120.1	CTP synthase family protein 	LOC_Os12g36950.1	"CTP synthase, putative, expressed"	Medtr1g107220.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
Ptp.2423.1.S1_at	B	B1S	POPTR_0004s21120	POPTR_0004s21120 (6:547)	NA	NA	NA	NA	AT5G22210.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2424.1.S1_at	B	B1S	POPTR_0002s02100	POPTR_0002s02100 (1:722)	NA	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2426.1.S1_at	B	B1S	POPTR_0005s26240	POPTR_0005s26240 (7:322)	NA	NA	P83332	Thaumatin-like protein 1	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2451.1.A1_at	B	B1S	POPTR_0010s21180	POPTR_0010s21180 (7:75)	NA	NA	P30171	Actin-97	AT3G12110.1	actin-11 	LOC_Os03g50885.1	"actin, putative, expressed"	Medtr7g111960.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.2451.2.S1_at	B	B1S	POPTR_0013s11240	POPTR_0013s11240 (5:524)	NA	NA	Q91WF7	Polyphosphoinositide phosphatase	AT1G22620.1	Phosphoinositide phosphatase family protein 	LOC_Os08g01750.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2454.1.S1_at	B	B1S	POPTR_0006s25640	POPTR_0006s25640 (4:271)	NA	NA	P42158	Casein kinase I isoform delta-like	AT4G28880.1	casein kinase I-like 3 	LOC_Os01g13060.2	"CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr6g098690.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2454.1.S1_s_at	B	B1S	POPTR_0006s25640	POPTR_0006s25640 (8:425)	NA	NA	P42158	Casein kinase I isoform delta-like	AT4G28880.1	casein kinase I-like 3 	LOC_Os01g13060.2	"CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr6g098690.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2455.1.S1_at	B	B1S	POPTR_0012s14610	POPTR_0012s14610 (0:312)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g124010.1	"Putative transmembrane protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.246.1.A1_at	B	B1S	POPTR_0001s39290	POPTR_0001s39290 (6:415)	NA	NA	P73555	Uncharacterized membrane protein sll0875	AT1G78620.1	"Protein of unknown function DUF92, transmembrane "	LOC_Os01g52864.2	"transmembrane protein, putative, expressed"	Medtr7g062060.1	"Protein of unknown function DUF92, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2466.1.S1_at	B	B1S	POPTR_0010s25520	POPTR_0010s25520 (7:259)	NA	NA	Q5UPJ7	Tyrosyl-tRNA synthetase	AT2G33840.1	"Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial "	LOC_Os08g05490.1	"tRNA synthetase, putative, expressed"	Medtr1g008380.1	"Aminoacyl-tRNA synthetase, class Ib; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.2468.1.S1_at	B	B1S	POPTR_0009s10730	POPTR_0009s10730 (8:425)	NA	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT2G03550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g37060.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129340.1	"CXE carboxylesterase, putative "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.247.1.A1_at	B	B1S	POPTR_0008s18910	POPTR_0008s18910 (0:2)	NA	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G26370.1	O-fucosyltransferase family protein 	LOC_Os02g06400.1	"growth regulator related protein, putative, expressed"	Medtr3g102440.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2471.1.S1_at	B	B1A	POPTR_0004s19441	POPTR_0004s19441 (8:166)	NA	NA	Q5R5S4	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2475.1.S1_at	B	B1S	POPTR_0010s10300	POPTR_0010s10300 (3:94)	scaffold_10:10835872-10836117(-) (9)	NA	P00693	Alpha-amylase type A isozyme	AT1G69830.1	alpha-amylase-like 3 	LOC_Os01g51754.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
Ptp.2496.1.S1_at	B	B1S	POPTR_0003s00930	POPTR_0003s00930 (0:318)	NA	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.2497.1.S1_at	B	B2S	POPTR_0017s02690	POPTR_0017s02690 (4:490)//POPTR_0293s00210 (0:451)	NA	NA	Q9CXS4	Centromere protein V	AT5G16940.2	carbon-sulfur lyases 	LOC_Os09g23370.2	"proline-rich protein 6, putative, expressed"	Medtr3g087280.1	"Glutathione-dependent formaldehyde-activating, GFA "	GO:0008152|metabolic process	GO:0016846|carbon-sulfur lyase activity	NA
Ptp.2499.1.S1_at	B	B1S	POPTR_0011s03520	POPTR_0011s03520 (8:1001)	NA	NA	NA	NA	AT1G61667.1	"Protein of unknown function, DUF538 "	LOC_Os07g36410.1	expressed protein	Medtr2g011040.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.250.1.S1_s_at	B	B1S	POPTR_0009s16530	POPTR_0009s16530 (0:114)	NA	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2508.1.S1_at	B	B1S	POPTR_0001s34730	POPTR_0001s34730 (5:1731)	scaffold_1:32967211-32969193(-) (11)	NA	Q2U0S9	GPI ethanolamine phosphate transferase 1	AT3G01380.1	transferases;sulfuric ester hydrolases;catalytics;transferases 	LOC_Os02g37050.1	"phosphatidylinositolglycan class N family protein, expressed"	Medtr7g029640.1	Alkaline phosphatase; Phosphatidylinositolglycan class N (PIG-N) 	GO:0006506|GPI anchor biosynthetic process	GO:0016740|transferase activity	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
Ptp.2517.1.S1_at	B	B1S	POPTR_0008s20940	POPTR_0008s20940 (8:347)	NA	NA	NA	NA	AT5G18660.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g22780.1	"DVR, putative, expressed"	Medtr2g025270.1	NmrA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2519.1.S1_at	B	B1S	POPTR_0014s16270	POPTR_0014s16270 (0:133)	NA	NA	Q9LUB7	Protein OBERON 2	AT5G48160.2	Protein of unknown function (DUF1423) 	LOC_Os12g32980.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr5g105070.1	"Zinc finger, PHD-type; Arabidopsis thaliana 130.7kDa hypothetical protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2519.2.S1_s_at	B	B1S	POPTR_0002s22210	POPTR_0002s22210 (8:31)	NA	NA	Q9LUB7	Protein OBERON 2	AT5G48160.2	Protein of unknown function (DUF1423) 	LOC_Os12g32980.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr5g105070.1	"Zinc finger, PHD-type; Arabidopsis thaliana 130.7kDa hypothetical protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.252.2.A1_at	B	B1S	POPTR_0017s01150	POPTR_0017s01150 (8:137)	NA	NA	Q9SW09	40S ribosomal protein S10-1	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.2	"Plectin/S10, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2521.1.A1_at	B	B1S	POPTR_0016s06480	POPTR_0016s06480 (8:359)	NA	NA	Q94AX4	"D-lactate dehydrogenase [cytochrome], mitochondrial"	AT5G06580.1	FAD-linked oxidases family protein 	LOC_Os07g06890.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.2531.1.S1_at	B	B1S	POPTR_0018s04720	POPTR_0018s04720 (4:228)	scaffold_18:4066760-4067281(-) (9)	NA	Q9M0G2	Zinc finger CCCH domain-containing protein 49	AT4G29190.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g09620.2	"zinc finger/CCCH transcription factor, putative, expressed"	Medtr4g160380.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2534.1.S1_at	B	B1S	POPTR_0007s03020	POPTR_0007s03020 (0:285)	NA	NA	NA	NA	AT1G31817.1	Ribosomal L18p/L5e family protein 	LOC_Os03g26860.1	"ribosomal protein, putative, expressed"	Medtr2g125760.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.254.1.S1_at	B	B1S	POPTR_0016s05970	POPTR_0016s05970 (8:372)	NA	NA	Q9M2P4	E3 ubiquitin-protein ligase SINAT2	AT3G58040.1	seven in absentia of Arabidopsis 2 	LOC_Os05g14860.1	"seven in absentia protein family domain containing protein, expressed"	Medtr7g112270.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
Ptp.2543.1.S1_at	B	B1S	POPTR_0009s07960	POPTR_0009s07960 (7:575)	NA	NA	P93028	Ubiquitin-activating enzyme E1 1	AT2G30110.1	ubiquitin-activating enzyme 1 	LOC_Os11g01510.3	"ubiquitin-activating enzyme, putative, expressed"	Medtr5g080760.1	"Ubiquitin-activating enzyme, E1; Lipase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
Ptp.2544.1.A1_at	B	B1S	POPTR_0002s25300	POPTR_0002s25300 (8:555)	NA	NA	P33543	Putative kinase-like protein TMKL1	AT3G24660.1	transmembrane kinase-like 1 	LOC_Os08g45060.1	"protein Kinase-like protein TMKL1 precursor, putative, expressed"	Medtr5g090940.1	Protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.2547.1.S1_x_at	B	B1S	POPTR_0009s12150	POPTR_0009s12150 (5:1410)	scaffold_9:9959169-9960707(-) (11)	NA	P46301	40S ribosomal protein S25	AT4G39200.1	Ribosomal protein S25 family protein 	LOC_Os08g44480.1	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.255.1.A1_at	B	B1S	POPTR_0001s32370	POPTR_0001s32370 (8:474)	NA	NA	Q6GL77	UBX domain-containing protein 1	AT1G04850.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os02g30180.1	"ZOS2-07 - C2H2 zinc finger protein, expressed"	Medtr4g133680.1	"Ubiquitin-associated; PUG; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2554.1.A1_at	B	B1S	POPTR_0014s07010	POPTR_0014s07010 (8:2005)	scaffold_14:5281473-5283616(-) (10)	NA	O64645	MADS-box protein SOC1	AT2G45660.1	AGAMOUS-like 20 	LOC_Os10g39130.1	"OsMADS56 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.256.1.S1_at	B	B1S	POPTR_0014s09340	POPTR_0014s09340 (0:130)	NA	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2571.1.A1_at	B	B1S	POPTR_0002s09330	POPTR_0002s09330 (2:309)	NA	NA	P78820	Acetyl-CoA carboxylase	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
Ptp.2575.1.S1_at	B	B1S	POPTR_0007s04880	POPTR_0007s04880 (6:1642)	NA	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2578.1.S1_at	B	B1S	POPTR_0002s10580	POPTR_0002s10580 (3:801)	NA	NA	Q9FUY6	MADS-box protein JOINTLESS	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os02g52340.1	"OsMADS22 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.258.1.A1_at	B	B1A	POPTR_0005s20220	POPTR_0005s20220 (7:902)	scaffold_5:19255572-19256743(-) (9)	NA	P40937	Replication factor C subunit 5	AT1G77470.1	replication factor C subunit 3 	LOC_Os02g53500.2	"RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed"	Medtr3g100750.1	"AAA ATPase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
Ptp.2583.2.S1_x_at	B	B1S	POPTR_0007s02460	POPTR_0007s02460 (2:416)	NA	NA	Q8H159	Polyubiquitin 10	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.5	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.26.1.S1_at	B	B1S	POPTR_0009s05250	POPTR_0009s05250 (2:123)	scaffold_9:5376383-5376758(-) (9)	NA	O14647	Chromodomain-helicase-DNA-binding protein 2	AT2G13370.1	chromatin remodeling 5 	LOC_Os07g46590.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g097130.1	"SNF2-related; Chromo; Helicase, C-terminal; Homeodomain-like; "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
Ptp.2607.1.S1_x_at	B	B1S	POPTR_0018s09880	POPTR_0018s09880 (1:397)	NA	NA	P05348	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.2	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os02g05830.2	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr8g129230.2	"Ribulose bisphosphate carboxylase, small chain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2607.2.S1_a_at	B	B1S	POPTR_0018s09880	POPTR_0018s09880 (7:509)	NA	NA	P05348	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.2	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os02g05830.2	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr8g129230.2	"Ribulose bisphosphate carboxylase, small chain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.261.1.S1_at	B	B1S	POPTR_0001s37150	POPTR_0001s37150 (4:219)	NA	NA	Q9LDH0	"Beta-(1,2)-xylosyltransferase"	AT5G55500.1	"beta-1,2-xylosyltransferase "	LOC_Os08g39380.1	"beta 1,2-xylosyltransferase, putative, expressed"	Medtr3g076770.1	"beta 1,2 xylosyltransferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2616.1.S1_at	B	B1S	POPTR_0006s26300	POPTR_0006s26300 (7:526)	NA	NA	Q92576	PHD finger protein 3	AT5G25520.2	SPOC domain / Transcription elongation factor S-II protein 	LOC_Os02g11780.1	"transcription factor S-II, central domain containing protein, expressed"	Medtr3g136140.1	"Transcription elongation factor S-II, central region; SPOC "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
Ptp.2619.2.S1_at	B	B1S	POPTR_0009s12270	POPTR_0009s12270 (0:1081)	NA	NA	NA	NA	AT2G16385.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr8g040310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.262.2.S1_at	B	B1S	POPTR_0003s08950	POPTR_0003s08950 (8:378)	NA	NA	NA	NA	AT4G17950.1	AT hook motif DNA-binding family protein 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr8g102740.1	Protein of unknown function DUF296 	NA	GO:0003677|DNA binding	NA
Ptp.2623.1.S1_at	B	B1S	POPTR_0011s17150	POPTR_0011s17150 (2:35)	scaffold_11:18750305-18750436(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT5G56170.1	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 	LOC_Os02g48980.1	"GPI-anchored protein, putative, expressed"	Medtr3g016820.1	"GPI-anchored protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2625.1.S1_at	B	B1S	POPTR_0012s07460	POPTR_0012s07460 (6:479)	NA	NA	NA	NA	AT3G47850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to 57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os05g13390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.263.1.A1_at	B	B1S	POPTR_0012s11870	POPTR_0012s11870 (2:209)	NA	NA	Q6PGS5	Transmembrane protein 56-B	AT1G31300.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os03g46410.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
Ptp.2635.1.S1_at	B	B1S	POPTR_0002s26100	POPTR_0002s26100 (3:1105)	NA	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT4G28600.1	no pollen germination related 2 	LOC_Os10g33290.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g090090.2	"NPGR2 ; calmodulin binding ta, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.264.1.A1_at	B	B1S	POPTR_0001s13770	POPTR_0001s13770 (7:157)	NA	NA	Q9FZK1	F-box only protein 6	AT1G27340.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g69940.1	"OsFBX32 - F-box domain containing protein, expressed"	Medtr3g104000.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2645.1.S1_at	B	B1S	POPTR_0014s09190	POPTR_0014s09190 (3:495)	NA	NA	Q9SUP6	Probable WRKY transcription factor 53	AT4G23810.1	WRKY family transcription factor 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.2646.1.S1_s_at	B	B1S	POPTR_0011s17170	POPTR_0011s17170 (8:81)	NA	NA	Q9S7N7	"Photosystem I reaction center subunit V, chloroplastic"	AT1G55670.1	photosystem I subunit G 	LOC_Os09g30340.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	Medtr3g016960.1	Photosystem I psaG/psaK protein 	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
Ptp.265.1.S1_at	B	B1S	POPTR_0014s03510	POPTR_0014s03510 (3:351)	NA	NA	Q8GZD4	Nucleobase-ascorbate transporter 3	AT2G26510.1	Xanthine/uracil permease family protein 	LOC_Os12g39420.9	"nucleobase-ascorbate transporter, putative, expressed"	Medtr1g025100.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2652.1.A1_at	B	B1S	POPTR_0002s17380	POPTR_0002s17380 (8:765)	scaffold_2:13143252-13147111(-) (11)	NA	NA	NA	AT2G46540.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g46450.1	"fiber protein Fb11, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2652.1.A1_s_at	B	B1S	POPTR_0002s17380	POPTR_0002s17380 (5:661)	scaffold_2:13143405-13147007(-) (10)	NA	NA	NA	AT2G46540.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g46450.1	"fiber protein Fb11, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.266.1.S1_at	B	B1S	POPTR_0002s06310	POPTR_0002s06310 (3:195)	NA	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2663.1.S1_at	B	B1S	POPTR_0013s01620	POPTR_0013s01620 (8:253)	NA	NA	Q9M9W3	Serine/threonine-protein phosphatase PP1 isozyme 9	AT3G05580.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g24750.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g138660.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.2665.1.S1_at	B	B1S	POPTR_0003s03250	POPTR_0003s03250 (3:165)	NA	NA	P40228	Casein kinase II subunit beta	AT5G47080.4	casein kinase II  beta chain 1 	LOC_Os10g41520.1	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.2666.1.S1_at	B	B1S	POPTR_0014s13620	POPTR_0014s13620 (3:567)	NA	NA	Q3EBD3	DEAD-box ATP-dependent RNA helicase 41	AT3G02065.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g10770.2	"DEAD-box ATP-dependent RNA helicase 41, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.2666.2.S1_at	B	B1S	POPTR_0014s13620	POPTR_0014s13620 (7:850)	NA	NA	Q3EBD3	DEAD-box ATP-dependent RNA helicase 41	AT3G02065.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g10770.2	"DEAD-box ATP-dependent RNA helicase 41, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.2670.1.S1_at	B	B1S	POPTR_0006s23300	POPTR_0006s23300 (8:775)	NA	NA	NA	NA	AT4G33140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os06g09320.2	expressed protein	Medtr8g133390.1	"tac7077, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2673.1.S1_x_at	B	B3S	POPTR_0007s06760	POPTR_0007s06760 (6:608)//POPTR_0007s06740 (5:546)//POPTR_0007s06750 (0:351)	scaffold_7:5122877-5126606(+) (11)	NA	Q9XIK3	"Iron-sulfur assembly protein IscA, chloroplastic"	AT1G10500.1	chloroplast-localized ISCA-like protein 	LOC_Os06g05400.1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"	Medtr4g141040.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2674.1.S1_at	B	B1S	POPTR_0011s16900	POPTR_0011s16900 (0:560)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g104410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2683.1.S1_at	B	B1S	POPTR_0013s13680	POPTR_0013s13680 (3:224)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2685.1.S1_at	B	B1A	POPTR_0003s14030	POPTR_0003s14030 (0:332)	NA	NA	NA	NA	AT4G23890.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). "	LOC_Os07g09800.1	expressed protein	Medtr8g034390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2685.1.S1_s_at	B	B1A	POPTR_0003s14030	POPTR_0003s14030 (8:913)	NA	NA	NA	NA	AT4G23890.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). "	LOC_Os07g09800.1	expressed protein	Medtr8g034390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2690.1.S1_at	B	B1S	POPTR_0004s09240	POPTR_0004s09240 (8:529)	NA	NA	NA	NA	AT2G01275.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g03100.2	"protein binding protein, putative, expressed"	Medtr1g137400.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2692.1.S1_at	B	B1S	POPTR_0014s12400	POPTR_0014s12400 (4:404)	NA	NA	NA	NA	AT4G02425.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g21410.1	expressed protein	Medtr1g108420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2694.2.S1_at	B	B1S	POPTR_0010s18300	POPTR_0010s18300 (0:921)	NA	NA	Q0VCZ3	YTH domain family protein 2	AT1G79270.1	evolutionarily conserved C-terminal region 8 	LOC_Os01g48790.1	"YT521-B-like family domain containing protein, expressed"	Medtr2g085380.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2697.1.S1_at	B	B1S	POPTR_0007s07920	POPTR_0007s07920 (0:1)	NA	NA	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT3G19740.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g12160.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g101160.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.2698.1.S1_at	B	B1S	POPTR_0017s13570	POPTR_0017s13570 (6:357)	NA	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.270.1.A1_at	B	B1S	POPTR_0002s24420	POPTR_0002s24420 (7:710)	NA	NA	C0LGV0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	AT5G48740.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	AC146793_13.1	Leucine-rich repeat AC146793.7 75617-72033 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2704.1.S1_at	B	B1A	POPTR_0006s24140	POPTR_0006s24140 (0:794)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2706.1.S1_at	B	B1S	POPTR_0015s14780	POPTR_0015s14780 (8:291)	NA	NA	Q8VXX5	Monocopper oxidase-like protein SKS1	AT4G25240.1	SKU5 similar 1 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr3g010000.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2707.1.S1_at	B	B1S	POPTR_0002s00860	POPTR_0002s00860 (5:1060)	NA	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT5G24318.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os01g53750.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g160090.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2710.1.S1_s_at	B	B1S	POPTR_0010s15190	POPTR_0010s15190 (6:472)	scaffold_10:14525073-14525611(+) (11)	NA	Q9M7X7	60S ribosomal protein L29-1	AT3G06680.1	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g137850.1	Ribosomal L29e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2713.1.S1_at	B	B1S	POPTR_0011s07040	POPTR_0011s07040 (6:257)	NA	NA	Q8LPK5	Cellulose synthase A catalytic subunit 8 [UDP-forming]	AT4G18780.1	cellulose synthase family protein 	LOC_Os01g54620.1	"CESA4 - cellulose synthase, expressed"	Medtr4g134990.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.2725.1.S1_at	B	B1S	POPTR_0010s23750	POPTR_0010s23750 (3:357)	NA	NA	NA	NA	AT3G52790.1	peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g38040.1	"lysM domain containing protein, putative, expressed"	Medtr7g127020.1	Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.2726.1.S1_at	B	B1S	POPTR_0001s33810	POPTR_0001s33810 (8:287)	NA	NA	Q42602	Cytochrome P450 89A2	AT1G64940.1	"cytochrome P450, family 87, subfamily A, polypeptide 6 "	LOC_Os06g22340.1	"cytochrome P450, putative, expressed"	Medtr2g010280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.273.1.S1_at	B	B1S	POPTR_0013s07630	POPTR_0013s07630 (6:186)	scaffold_13:6466823-6468616(+) (11)	NA	Q9LX65	V-type proton ATPase subunit H	AT3G42050.1	vacuolar ATP synthase subunit H family protein 	LOC_Os07g36470.1	"vacuolar ATP synthase subunit H, putative, expressed"	Medtr8g093980.1	"Cytochrome b5; V-ATPase subunit H, C-terminal "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0000221|""vacuolar proton-transporting V-type ATPase, V1 domain"""
Ptp.273.1.S1_x_at	B	B1S	POPTR_0013s07630	POPTR_0013s07630 (2:185)	scaffold_13:6466824-6468616(+) (11)	NA	Q9LX65	V-type proton ATPase subunit H	AT3G42050.1	vacuolar ATP synthase subunit H family protein 	LOC_Os07g36470.1	"vacuolar ATP synthase subunit H, putative, expressed"	Medtr8g093980.1	"Cytochrome b5; V-ATPase subunit H, C-terminal "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0000221|""vacuolar proton-transporting V-type ATPase, V1 domain"""
Ptp.2732.1.S1_at	B	B1S	POPTR_0004s01370	POPTR_0004s01370 (7:1310)	NA	NA	Q7XPR1	Autophagy-related protein 8B	AT1G62040.2	Ubiquitin-like superfamily protein 	LOC_Os04g53240.4	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2736.1.S1_at	B	B1S	POPTR_0019s10810	POPTR_0019s10810 (6:314)	NA	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2738.1.A1_at	B	B1S	POPTR_0013s04420	POPTR_0013s04420 (6:339)	NA	NA	A3KPW7	Protein prenyltransferase alpha subunit repeat-containing protein 1	AT1G10095.1	Protein prenylyltransferase superfamily protein 	LOC_Os01g49060.1	"prenyltransferase, putative, expressed"	NA	NA	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity	NA
Ptp.2742.1.S1_at	B	B1S	POPTR_0004s06510	POPTR_0004s06510 (6:172)	NA	NA	NA	NA	NA	NA	LOC_Os02g32340.1	"Spc97 / Spc98 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2747.1.S1_at	B	B1S	POPTR_0001s29190	POPTR_0001s29190 (5:574)	NA	NA	A1JNE0	Zinc transport protein zntB	AT2G04305.1	Magnesium transporter CorA-like family protein 	LOC_Os08g03600.1	expressed protein	Medtr2g010080.1	"metal ion transporter, putative "	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
Ptp.2749.1.S1_at	B	B1S	POPTR_0006s14550	POPTR_0006s14550 (1:149)	NA	NA	Q6NXD8	DENN domain-containing protein 5B	AT5G35560.1	DENN (AEX-3) domain-containing protein 	LOC_Os02g53700.7	"DENN domain containing protein, expressed"	Medtr7g117470.1	DENN; uDENN 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.275.1.S1_at	B	B1S	POPTR_0001s34410	POPTR_0001s34410 (5:549)	NA	NA	NA	NA	AT1G29395.1	COLD REGULATED 314 INNER MEMBRANE 1 	LOC_Os05g49170.1	"cold acclimation protein WCOR413, putative, expressed"	Medtr4g136630.1	Cold acclimation WCOR413 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2754.2.A1_at	B	B1S	POPTR_0008s11610	POPTR_0008s11610 (8:1374)	NA	NA	Q9FV52	"Methionine aminopeptidase 1B, chloroplastic"	AT1G13270.1	methionine aminopeptidase 1B 	LOC_Os04g52100.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g069010.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.2755.1.S1_at	B	B1A	POPTR_0001s04700	POPTR_0001s04700 (5:264)	NA	NA	Q94F88	DNA (cytosine-5)-methyltransferase CMT3	AT1G69770.1	chromomethylase 3 	LOC_Os03g12570.1	expressed protein	AC233109_26.1	Chromo; Bromo adjacent region; C-5 cytosine-specific DNA methylase AC233109.4 111187-105639 E EGN_Mt090430 200	GO:0006306|DNA methylation||GO:0044260|cellular macromolecule metabolic process||GO:0006333|chromatin assembly or disassembly||GO:0044281|small molecule metabolic process	GO:0003677|DNA binding||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
Ptp.277.1.A1_at	B	B1S	POPTR_0010s18640	POPTR_0010s18640 (3:322)	NA	NA	NA	NA	AT5G16250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g41900.1	expressed protein	Medtr7g090170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2779.1.S1_at	B	B1S	POPTR_0009s04210	POPTR_0009s04210 (0:95)	NA	NA	Q9LNW3	Protein phosphatase 2C 3	AT1G07430.1	highly ABA-induced PP2C gene 2 	LOC_Os01g62760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2784.2.S1_at	B	B1A	POPTR_0005s20170	POPTR_0005s20170 (8:552)	NA	NA	Q9SCJ9	Ubiquitin carboxyl-terminal hydrolase 26	AT3G49600.1	ubiquitin-specific protease 26 	LOC_Os03g09260.1	"ubiquitin carboxyl-terminal hydrolase 26, putative, expressed"	Medtr3g133630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.2787.1.S1_at	B	B1S	POPTR_0010s06730	POPTR_0010s06730 (5:2295)	NA	NA	A2A4P0	ATP-dependent RNA helicase DHX8	AT1G27900.1	RNA helicase family protein 	LOC_Os11g20554.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.279.1.A1_at	B	B1S	POPTR_0009s01780	POPTR_0009s01780 (8:547)	NA	NA	Q9SCV4	Beta-galactosidase 8	AT2G28470.1	beta-galactosidase 8 	LOC_Os03g15020.1	"beta-galactosidase precursor, putative, expressed"	Medtr4g081500.1	"Rhodopsin-like GPCR superfamily; D-galactoside/L-rhamnose binding SUEL lectin; Glycoside hydrolase, family 35 "	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2794.1.S1_x_at	B	B1S	POPTR_0008s13040	POPTR_0008s13040 (7:782)	NA	NA	Q9ZVF3	MLP-like protein 328	AT1G14930.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr1g034930.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.2797.1.S1_at	B	B1S	POPTR_0001s11470	POPTR_0001s11470 (1:358)	NA	NA	NA	NA	AT4G19550.1	zinc ion binding;transcription regulators 	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0045941|positive regulation of transcription	GO:0008270|zinc ion binding||GO:0016563|transcription activator activity	GO:0005634|nucleus
Ptp.2800.1.S1_at	B	B1A	POPTR_0002s11960	POPTR_0002s11960 (7:471)	NA	NA	O22193	U-box domain-containing protein 4	AT3G01400.1	ARM repeat superfamily protein 	LOC_Os03g32100.1	"spotted leaf 11, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2804.1.S1_at	B	B1S	POPTR_0010s15000	POPTR_0010s15000 (8:171)	NA	NA	P78316	Nucleolar protein 14	AT1G69070.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). 	LOC_Os03g40110.1	"nop14-like family protein, expressed"	Medtr1g043170.1	Nop14-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2805.1.S1_at	B	B1S	POPTR_0016s04080	POPTR_0016s04080 (7:481)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2808.1.S1_at	B	B1S	POPTR_0016s01890	POPTR_0016s01890 (3:291)	NA	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21750.1	UDP-glucosyl transferase 71B1 	LOC_Os07g32010.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g097770.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.281.1.S1_at	B	B1S	POPTR_0018s06520	POPTR_0018s06520 (0:49)	NA	NA	Q9MAT5	Probable protein arginine N-methyltransferase 4.2	AT1G04870.2	protein arginine methyltransferase 10 	LOC_Os06g05090.1	"methyltransferase domain containing protein, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.2811.1.S1_at	B	B1S	POPTR_0002s03710	POPTR_0002s03710 (7:468)	NA	NA	Q06190	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha	AT5G44090.1	Calcium-binding EF-hand family protein 	LOC_Os10g33680.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed"	Medtr1g093540.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2816.1.S1_at	B	B1S	POPTR_0337s00220	POPTR_0337s00220 (8:543)	NA	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT1G43910.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr8g092850.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.2827.1.S1_at	B	B1S	POPTR_0010s20730	POPTR_0010s20730 (5:1837)	NA	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT5G06060.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2829.1.S1_at	B	B1S	POPTR_0008s17450	POPTR_0008s17450 (3:537)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2846.1.S1_at	B	B1S	POPTR_0014s13610	POPTR_0014s13610 (0:384)	NA	NA	NA	NA	AT5G47920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g31350.1	expressed protein	Medtr7g099490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.285.1.A1_at	B	B1S	POPTR_0005s08770	POPTR_0005s08770 (4:229)	NA	NA	NA	NA	AT4G39470.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2853.1.S1_at	B	B1S	POPTR_0001s23260	POPTR_0001s23260 (5:425)	NA	NA	Q14919	Dr1-associated corepressor	AT3G12480.1	"nuclear factor Y, subunit C11 "	LOC_Os05g41450.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g044480.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2856.1.S1_at	B	B1S	POPTR_0002s02130	POPTR_0002s02130 (3:319)	NA	NA	Q5RAG2	Extended synaptotagmin-1	AT1G20080.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g25060.1	"NTMC2Type1.2 protein, putative, expressed"	Medtr4g098660.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2860.1.A1_at	B	B1A	POPTR_0001s11860	POPTR_0001s11860 (7:885)	NA	NA	O81211	Respiratory burst oxidase homolog protein E	AT5G49740.1	ferric reduction oxidase 7 	LOC_Os04g36720.1	"ferric-chelate reductase, putative, expressed"	Medtr2g034110.1	; 	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
Ptp.2865.1.A1_at	B	B1S	POPTR_0007s14310	POPTR_0007s14310 (4:346)	NA	NA	Q9FVC1	MADS-box protein SVP	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os03g08754.2	"OsMADS47 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2868.1.S1_at	B	B1S	POPTR_0003s01770	POPTR_0003s01770 (4:1376)	NA	NA	Q66KH2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT1G36050.1	Endoplasmic reticulum vesicle transporter protein 	LOC_Os05g41120.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2870.1.S1_at	B	B1S	POPTR_0005s04240	POPTR_0005s04240 (0:88)	NA	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G27320.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g098780.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.2877.1.A1_at	B	B1S	POPTR_0006s26210	POPTR_0006s26210 (0:173)	NA	NA	NA	NA	AT2G25680.1	molybdate transporter 1 	LOC_Os08g01120.1	"sulfate transporter, putative, expressed"	Medtr3g135970.1	Sulphate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2885.1.S1_at	B	B1S	POPTR_0013s07710	POPTR_0013s07710 (0:143)	NA	NA	Q5U2W5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
Ptp.2886.1.A1_at	B	B1S	POPTR_0001s43950	POPTR_0001s43950 (4:133)	NA	NA	Q8GXT3	Transcription factor bHLH123	AT3G20640.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g42180.1	"ethylene-responsive protein related, putative"	Medtr2g096070.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2887.1.S1_at	B	B1S	POPTR_0017s11030	POPTR_0017s11030 (7:478)	NA	NA	Q9LHD1	ABC transporter B family member 15	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.2888.2.S1_at	B	B1S	POPTR_0001s24390	POPTR_0001s24390 (7:419)	NA	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr2g114650.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2889.2.A1_a_at	B	B1S	POPTR_0007s14160	POPTR_0007s14160 (7:271)	NA	NA	NA	NA	AT2G22600.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr5g033090.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.2889.2.A1_at	B	B1S	POPTR_0007s14160	POPTR_0007s14160 (6:264)	NA	NA	NA	NA	AT2G22600.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr5g033090.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.2893.1.S1_at	B	B1S	POPTR_0005s27240	POPTR_0005s27240 (7:333)	NA	NA	P30924	"1,4-alpha-glucan-branching enzyme"	AT5G03650.1	starch branching enzyme 2.2 	LOC_Os06g51084.1	"1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed"	Medtr7g126840.1	"Alpha amylase, C-terminal all-beta; "	GO:0005975|carbohydrate metabolic process	"GO:0043169|cation binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2894.1.A1_at	B	B1S	POPTR_0009s11280	POPTR_0009s11280 (6:565)	NA	NA	P48417	"Allene oxide synthase, chloroplastic"	AT5G42650.1	allene oxide synthase 	LOC_Os03g55800.1	"cytochrome P450, putative, expressed"	Medtr4g093070.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2895.1.A1_at	B	B1S	POPTR_0005s06970	POPTR_0005s06970 (6:468)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g143560.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2896.1.A1_at	B	B1S	POPTR_0016s06860	POPTR_0016s06860 (6:208)	NA	NA	Q9M9X4	Nuclear transcription factor Y subunit A-2	AT3G05690.1	"nuclear factor Y, subunit A2 "	LOC_Os12g42400.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr1g149800.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.290.1.S1_at	B	B1S	POPTR_0007s08600	POPTR_0007s08600 (8:565)	NA	NA	Q7Z569	BRCA1-associated protein	AT2G26000.2	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g09060.1	"BRCA1-associated protein, putative, expressed"	Medtr2g127260.1	"Zinc finger, UBP-type; Zinc finger, RING-type; BRCA1-associated 2 "	NA	GO:0008270|zinc ion binding	NA
Ptp.2911.1.S1_s_at	B	B1S	POPTR_0006s21950	POPTR_0006s21950 (8:314)	NA	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2915.1.S1_at	B	B1S	POPTR_0014s08850	POPTR_0014s08850 (5:542)	NA	NA	P29061	Basic endochitinase	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	AC146568_9.1	"Glycoside hydrolase, chitinase active site AC146568.11 45116-44051 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2916.1.S1_at	B	B1S	POPTR_0009s08150	POPTR_0009s08150 (7:351)	NA	NA	Q8IVS2	"Malonyl-CoA-acyl carrier protein transacylase, mitochondrial"	AT2G30200.1	catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding 	LOC_Os03g18590.1	"malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor, putative, expressed"	Medtr3g033970.1	Acyl transferase region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2919.2.A1_at	B	B2S	POPTR_0005s04130	POPTR_0005s04130 (0:184)//POPTR_0526s00230 (0:184)	NA	NA	Q9ASR4	Branched-chain-amino-acid aminotransferase-like protein 2	AT5G27410.2	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os03g24460.2	"aminotransferase domain containing protein, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2923.1.S1_at	B	B1S	POPTR_0014s11740	POPTR_0014s11740 (6:466)	NA	NA	NA	NA	AT4G02100.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os03g19200.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g132780.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
Ptp.2924.1.A1_s_at	B	B1S	POPTR_0004s18160	POPTR_0004s18160 (3:630)	scaffold_4:18156413-18157219(+) (11)	NA	Q8LBA6	CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1	AT1G68000.1	phosphatidylinositol synthase 1 	LOC_Os02g03110.2	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr4g098430.1	CDP-alcohol phosphatidyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2926.1.S1_at	B	B1S	POPTR_0009s05220	POPTR_0009s05220 (8:793)	NA	NA	O74918	Exosome complex component rrp45	AT3G60500.3	3'-5'-exoribonuclease family protein 	LOC_Os02g34570.2	"exosome complex exonuclease, putative, expressed"	Medtr2g024450.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
Ptp.2929.1.S1_at	B	B1S	POPTR_0012s13070	POPTR_0012s13070 (8:191)	NA	NA	NA	NA	AT5G23890.1	"LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os03g64400.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr5g069510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.293.1.S1_at	B	B1S	POPTR_0001s34090	POPTR_0001s34090 (1:126)	NA	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT5G14210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g20360.2	expressed protein	Medtr8g142280.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2935.1.A1_at	B	B1S	POPTR_0011s10440	POPTR_0011s10440 (7:629)	NA	NA	Q803A0	Protein Jade-1	AT3G14740.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g08820.1	"PHD-finger domain containing protein, putative, expressed"	AC147714_3.1	"Zinc finger, FYVE/PHD-type AC147714.8 46319-47687 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2938.1.S1_at	B	B2S	POPTR_0002s08590	POPTR_0002s08590 (4:2159)//POPTR_0002s08600 (0:2075)	NA	NA	Q99JW2	Aminoacylase-1	AT1G44820.1	Peptidase M20/M25/M40 family protein 	LOC_Os06g10770.1	"peptidase, putative, expressed"	Medtr5g065740.1	N-acyl-L-amino-acid amidohydrolase 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.2939.2.A1_at	B	B1S	POPTR_0002s22890	POPTR_0002s22890 (7:989)	NA	NA	Q9AT00	"Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic"	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os03g46740.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.294.1.A1_at	B	B2S	POPTR_0008s16190	POPTR_0008s16190 (7:1837)//POPTR_0008s16230 (6:1167)	NA	NA	NA	NA	AT1G04280.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g43300.1	expressed protein	Medtr1g089770.1	"H1flk, putative "	GO:0001906|cell killing	GO:0005524|ATP binding	NA
Ptp.2940.1.S1_at	B	B1S	POPTR_0016s14880	POPTR_0016s14880 (7:168)	NA	NA	P85192	Unknown protein 1	NA	NA	LOC_Os11g02720.1	expressed protein	Medtr8g005080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2944.2.S1_at	B	B1A	POPTR_0007s13080	POPTR_0007s13080 (4:236)	NA	NA	NA	NA	AT2G18245.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g04110.1	expressed protein	Medtr5g020580.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2952.1.S1_at	B	B1S	POPTR_0001s41830	POPTR_0001s41830 (8:429)	NA	NA	Q94AS9	Cyclic nucleotide-gated ion channel 4	AT5G54250.2	cyclic nucleotide-gated cation channel 4 	LOC_Os01g57370.1	"cyclic nucleotide-gated ion channel 2, putative, expressed"	Medtr2g095430.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.2953.1.A1_at	B	B1S	POPTR_0007s02860	POPTR_0007s02860 (4:158)	NA	NA	NA	NA	AT1G11480.1	eukaryotic translation initiation factor-related 	LOC_Os07g36200.1	"eukaryotic translation initiation factor-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2968.1.A1_at	B	B1S	POPTR_0002s03890	POPTR_0002s03890 (4:526)	NA	NA	Q8L4E7	SAP-like protein BP-73	AT1G06190.1	Rho termination factor 	LOC_Os03g08480.2	"rho termination factor, N-terminal domain containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006353|transcription termination	GO:0003715|transcription termination factor activity	NA
Ptp.297.2.S1_at	B	B1S	POPTR_0006s27050	POPTR_0006s27050 (2:109)	NA	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os06g40450.3	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2971.2.A1_at	B	B1S	POPTR_0013s11890	POPTR_0013s11890 (8:959)	NA	NA	O78458	Uncharacterized protein ycf37	AT1G22700.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g32300.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2972.2.S1_at	B	B1S	POPTR_0006s24630	POPTR_0006s24630 (5:339)	NA	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.2	calcineurin B-like protein 10 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr1g020570.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2973.1.S1_at	B	B1S	POPTR_0013s14710	POPTR_0013s14710 (7:618)	NA	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.2	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g103220.1	"ATP-dependent helicase, DEAD-box; Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2978.1.A1_at	B	B1S	POPTR_0008s08680	POPTR_0008s08680 (4:882)	NA	NA	Q8SAY0	"50S ribosomal protein L18, chloroplastic"	AT1G14205.1	Ribosomal L18p/L5e family protein 	LOC_Os03g07340.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr5g044540.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2979.1.S1_at	B	B1S	POPTR_0010s13450	POPTR_0010s13450 (1:183)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.298.1.A1_at	B	B1S	POPTR_0018s02080	POPTR_0018s02080 (8:201)	NA	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2981.2.S1_at	B	B1S	POPTR_0007s03390	POPTR_0007s03390 (8:190)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2982.1.A1_at	B	B1S	POPTR_0010s13430	POPTR_0010s13430 (1:320)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2988.1.A1_at	B	B1S	POPTR_0015s06570	POPTR_0015s06570 (7:478)	NA	NA	Q54R62	Uridine-cytidine kinase C	AT1G73980.1	Phosphoribulokinase / Uridine kinase family 	LOC_Os02g47860.2	"uridine kinase, putative, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0006171|cAMP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004016|adenylate cyclase activity||GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.299.1.A1_at	B	B1S	POPTR_0012s12870	POPTR_0012s12870 (5:211)	NA	NA	A9IVX6	30S ribosomal protein S9	AT3G49080.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os07g46440.1	"ribosomal protein, putative, expressed"	Medtr1g025880.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2990.1.A1_at	B	B1S	POPTR_0009s02790	POPTR_0009s02790 (0:246)	NA	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.1	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2991.1.A1_at	B	B1S	POPTR_0007s06650	POPTR_0007s06650 (0:2103)	NA	NA	Q5ZID2	Programmed cell death protein 2-like	AT5G64830.1	programmed cell death 2 C-terminal domain-containing protein 	LOC_Os04g54820.1	"programmed cell death 2 C-terminal domain-containing protein, putative, expressed"	Medtr3g144680.1	"Programmed cell death protein 2, C-terminal "	NA	NA	GO:0005737|cytoplasm
Ptp.2995.1.S1_at	B	B1S	POPTR_0014s07830	POPTR_0014s07830 (8:155)	NA	NA	NA	NA	AT1G01730.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g085210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2999.1.S1_at	B	B1S	POPTR_0002s17700	POPTR_0002s17700 (5:207)	NA	NA	P33081	Auxin-induced protein 15A	AT2G46690.1	SAUR-like auxin-responsive protein family  	LOC_Os10g36703.1	"CPuORF40 - conserved peptide uORF-containing transcript, expressed"	Medtr3g123200.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.30.1.A1_at	B	B2S	POPTR_0017s02120	POPTR_0017s02120 (3:433)//POPTR_0017s02140 (3:415)	NA	NA	A4IGK4	RNA-binding protein 5	AT3G54230.1	suppressor of abi3-5 	LOC_Os02g07070.1	"RNA recognition motif family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3001.2.A1_at	B	B1S	POPTR_0002s22440	POPTR_0002s22440 (7:223)	NA	NA	Q8CFY5	"Protoheme IX farnesyltransferase, mitochondrial"	AT2G44520.1	cytochrome c oxidase 10 	LOC_Os01g34390.1	"prenyltransferase, putative, expressed"	Medtr1g146440.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
Ptp.3007.2.S1_at	B	B1S	POPTR_0002s06770	POPTR_0002s06770 (7:1708)	NA	NA	Q54IL5	UDP-sugar-dependent glycosyltransferase 52	AT1G43620.3	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64750.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr1g125050.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.3012.1.A1_at	B	B1S	POPTR_0010s14740	POPTR_0010s14740 (8:755)	NA	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os09g29930.2	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.3015.1.A1_at	B	B1A	POPTR_0008s15090	POPTR_0008s15090 (8:110)	NA	NA	Q9LUW0	"Lipoxygenase 5, chloroplastic"	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr1g132610.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.3024.1.A1_at	B	B1S	POPTR_0002s17010	POPTR_0002s17010 (0:438)	NA	NA	Q9SKD9	Probable WRKY transcription factor 46	AT2G46400.1	WRKY DNA-binding protein 46 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.303.2.A1_at	B	B1S	POPTR_0005s11890	POPTR_0005s11890 (0:177)	NA	NA	NA	NA	AT1G15380.2	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr5g021550.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3030.1.S1_at	B	B1S	POPTR_0010s18120	POPTR_0010s18120 (3:840)	NA	NA	Q9SAK4	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.3031.2.A1_at	B	B1S	POPTR_0001s40180	POPTR_0001s40180 (4:472)	NA	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78860.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23720.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
Ptp.3032.2.A1_at	B	B2S	POPTR_0014s02560	POPTR_1203s00200 (0:293)//POPTR_0014s02560 (0:183)	NA	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G42830.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g01350.1	"transferase family protein, putative, expressed"	Medtr3g147460.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.3033.1.A1_at	B	B1S	POPTR_0004s11170	POPTR_0004s11170 (8:31)	NA	NA	Q9SN86	"Malate dehydrogenase, chloroplastic"	AT3G47520.1	malate dehydrogenase 	LOC_Os08g33720.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.304.1.A1_at	B	B1S	POPTR_0013s03080	POPTR_0013s03080 (2:690)	NA	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
Ptp.3055.2.A1_at	B	B1S	POPTR_0015s05370	POPTR_0015s05370 (4:234)	NA	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr6g080390.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
Ptp.3057.1.A1_at	B	B1S	POPTR_0006s17720	POPTR_0006s17720 (1:1972)	NA	NA	Q54Q39	Protein phosphatase 1 regulatory subunit pprA	AT5G19680.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g13640.1	"protein phosphatase 1 regulatory subunit SDS22, putative, expressed"	Medtr4g159610.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.306.1.S1_at	B	B1S	POPTR_0006s23050	POPTR_0006s23050 (7:140)	NA	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G53520.1	UDP-glucuronic acid decarboxylase 1 	LOC_Os01g62020.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.3066.1.S1_at	B	B1S	POPTR_0009s17030	POPTR_0009s17030 (0:114)	NA	NA	Q99JW2	Aminoacylase-1	AT4G38220.1	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046680.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.3067.1.S1_at	B	B1S	POPTR_0003s04010	POPTR_0003s04010 (0:84)	NA	NA	O04373	IAA-amino acid hydrolase ILR1-like 4	AT1G51760.1	peptidase M20/M25/M40 family protein 	LOC_Os01g37960.1	"hydrolase, putative, expressed"	Medtr2g121800.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.3070.1.S1_at	B	B1S	POPTR_0006s09220	POPTR_0006s09220 (7:3173)	NA	NA	Q9LZM7	PRA1 family protein A1	AT5G02040.2	prenylated RAB acceptor 1.A1 	LOC_Os05g38160.1	"prenylated rab acceptor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3073.2.S1_at	B	B1S	POPTR_0004s24220	POPTR_0004s24220 (7:227)	NA	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3075.1.S1_at	B	B1S	POPTR_0016s14320	POPTR_0016s14320 (5:364)	NA	NA	Q9SG96	RING-H2 finger protein ATL72	AT3G10910.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr7g080330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3076.2.S1_at	B	B1S	POPTR_0019s02670	POPTR_0019s02670 (4:1441)	NA	NA	NA	NA	AT2G18465.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g59060.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3080.1.S1_at	B	B1S	POPTR_0010s14810	POPTR_0010s14810 (0:75)	NA	NA	Q9JHB5	Translin-associated protein X	AT2G03780.1	Translin family protein 	LOC_Os01g16100.1	"translin, putative, expressed"	Medtr8g077500.1	Translin 	NA	GO:0043565|sequence-specific DNA binding	NA
Ptp.3095.1.S1_at	B	B1S	POPTR_0002s24630	POPTR_0002s24630 (2:249)	NA	NA	Q6PD26	GPI transamidase component PIG-S	AT3G07180.1	GPI transamidase component PIG-S-related 	LOC_Os01g67960.1	"GPI transamidase component PIG-S-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3097.3.A1_at	B	B1S	POPTR_0009s07740	POPTR_0009s07740 (0:359)	NA	NA	Q68FD5	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os11g01380.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
Ptp.3099.1.S1_at	B	B1S	POPTR_0001s45970	POPTR_0001s45970 (3:513)	NA	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os08g40280.1	"lectin-like protein kinase, putative, expressed"	Medtr5g024990.1	Concanavalin A-like lectin/glucanase; Protein kinase-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.310.1.A1_at	B	B1S	POPTR_0012s08120	POPTR_0012s08120 (7:1294)	NA	NA	Q84WP5	UPF0497 membrane protein At2g36330	AT2G36330.1	Uncharacterised protein family (UPF0497) 	LOC_Os01g47200.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g113600.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
Ptp.3104.1.S1_at	B	B1S	POPTR_0002s02600	POPTR_0002s02600 (8:322)	NA	NA	Q0WSY2	Filament-like plant protein 4	AT1G19835.2	Plant protein of unknown function (DUF869) 	LOC_Os03g14250.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr5g021760.1	"Protein of unknown function DUF869, plant "	GO:0016032|viral reproduction	NA	NA
Ptp.3105.2.S1_at	B	B1S	POPTR_0012s11150	POPTR_0012s11150 (7:267)	NA	NA	NA	NA	AT5G51010.1	Rubredoxin-like superfamily protein 	LOC_Os11g32500.1	"rubredoxin family protein, putative, expressed"	Medtr3g151410.1	Rubredoxin-type Fe(Cys)4 protein 	NA	NA	GO:0016020|membrane
Ptp.3106.1.S1_at	B	B1S	POPTR_0008s04150	POPTR_0008s04150 (8:430)	NA	NA	O75376	Nuclear receptor corepressor 1	AT3G52250.1	Duplicated homeodomain-like superfamily protein 	LOC_Os05g03550.1	"MYB family transcription factor, putative, expressed"	Medtr1g121520.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3107.2.S1_at	B	B1S	POPTR_0018s08110	POPTR_0018s08110 (3:504)	NA	NA	Q39123	Homeobox-leucine zipper protein ATHB-8	AT4G32880.1	homeobox gene 8 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr3g130470.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.3109.1.S1_at	B	B1S	POPTR_0008s09010	POPTR_0008s09010 (7:443)	NA	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G14020.1	O-fucosyltransferase family protein 	LOC_Os03g07310.1	"growth regulator related protein, putative, expressed"	Medtr5g045270.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3111.2.A1_at	B	B1S	POPTR_0001s21870	POPTR_0001s21870 (8:287)	NA	NA	Q8RY89	Phosphatidylinositol-4-phosphate 5-kinase 8	AT1G60890.2	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os03g49510.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g137550.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
Ptp.3112.1.S1_at	B	B1S	POPTR_0002s16440	POPTR_0002s16440 (4:509)	NA	NA	Q49YU2	Diacylglycerol kinase	AT2G46090.1	Diacylglycerol kinase family protein 	LOC_Os03g03400.1	"diacylglycerol kinase, putative, expressed"	Medtr7g088910.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.3127.1.S1_s_at	B	B1S	POPTR_0018s06720	POPTR_0018s06720 (8:31)	NA	NA	Q94AA4	6-phosphofructokinase 3	AT4G26270.1	phosphofructokinase 3 	LOC_Os06g05860.1	"6-phosphofructokinase, putative, expressed"	Medtr3g128190.1	Phosphofructokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3134.1.S1_at	B	B1S	POPTR_0008s16080	POPTR_0008s16080 (8:489)	NA	NA	Q9FG93	Probable alpha-mannosidase I MNS4	AT5G43710.1	Glycosyl hydrolase family 47 protein 	LOC_Os01g56670.1	"glycosyl hydrolase family 47 domain contain protein, expressed"	Medtr8g125210.1	"Glycoside hydrolase, family 47 "	NA	"GO:0004571|""mannosyl-oligosaccharide 1,2-alpha-mannosidase activity""||GO:0005509|calcium ion binding"	GO:0016020|membrane
Ptp.3143.1.S1_at	B	B1S	POPTR_0006s10950	POPTR_0006s10950 (0:504)	NA	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3144.1.S1_at	B	B1S	POPTR_0019s01800	POPTR_0019s01800 (7:514)	NA	NA	NA	NA	AT5G09840.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os12g06560.1	expressed protein	Medtr3g144270.1	Protein of unknown function DUF537 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3146.1.S1_at	B	B1S	POPTR_0008s16470	POPTR_0008s16470 (6:138)	NA	NA	Q6NN02	"Uncharacterized protein At4g14450, chloroplastic"	AT4G14450.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3147.1.S1_at	B	B2S	POPTR_0014s17560	POPTR_0014s17560 (5:378)//POPTR_0014s01860 (0:372)	NA	NA	P33642	Probable D-amino acid oxidase PA4548	AT5G48440.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g33900.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr7g046700.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3154.1.S1_at	B	B1S	POPTR_0002s00200	POPTR_0002s00200 (8:1135)	NA	NA	Q9MA15	"Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic"	AT1G79600.1	Protein kinase superfamily protein 	LOC_Os05g25840.3	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3155.1.S1_at	B	B2S	POPTR_0004s14720	POPTR_0004s14720 (7:262)//POPTR_0009s10310 (1:250)	NA	NA	Q9FXA4	U-box domain-containing protein 26	AT1G49780.1	plant U-box 26 	LOC_Os02g34410.1	"U-box domain-containing protein, putative, expressed"	Medtr4g130110.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.3159.1.S1_at	B	B1S	POPTR_0007s11470	POPTR_0007s11470 (4:521)	NA	NA	Q9FGT7	Two-component response regulator ARR18	AT4G37180.1	Homeodomain-like superfamily protein 	LOC_Os03g55590.1	"MYB family transcription factor, putative, expressed"	Medtr5g017970.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.316.1.A1_at	B	B1S	POPTR_0008s14410	POPTR_0008s14410 (4:106)	NA	NA	NA	NA	AT3G11920.1	glutaredoxin-related 	LOC_Os10g34170.1	"glutaredoxin domain containing protein, putative, expressed"	AC233100_25.1	Protein of unknown function DUF547 AC233100.6 89976-92470 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3163.1.A1_at	B	B1S	POPTR_0010s21020	POPTR_0010s21020 (8:398)	NA	NA	NA	NA	AT3G48670.2	XH/XS domain-containing protein 	LOC_Os01g44230.1	"transcription factor X1, putative, expressed"	Medtr5g087360.1	"Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3165.1.S1_at	B	B1S	POPTR_0004s22960	POPTR_0004s22960 (1:437)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
Ptp.3168.1.S1_at	B	B4S	POPTR_0010s07090	POPTR_0010s07070 (0:1159)//POPTR_0010s07080 (0:584)//POPTR_0010s07090 (2:509)//POPTR_0010s07170 (1:385)	NA	NA	P32110	Probable glutathione S-transferase	AT3G09270.1	glutathione S-transferase TAU 8 	LOC_Os01g72140.1	"glutathione S-transferase, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3168.2.A1_at	B	B3A	POPTR_0010s07070	POPTR_0010s07170 (7:355)//POPTR_0010s07070 (8:350)//POPTR_0010s07090 (5:225)	scaffold_10:8298015-8306489(+) (11)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os03g39850.1	"glutathione S-transferase, putative, expressed"	Medtr4g081450.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3169.1.S1_a_at	B	B1S	POPTR_0010s11930	POPTR_0010s11930 (0:187)	NA	NA	Q9LQU4	Uncharacterized protein At1g14870	AT1G14870.1	PLANT CADMIUM RESISTANCE 2 	LOC_Os02g36940.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g157570.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.317.1.S1_at	B	B1S	POPTR_0001s24680	POPTR_0001s24680 (3:315)	NA	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT5G24318.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g114760.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.317.1.S1_s_at	B	B1S	POPTR_0001s24680	POPTR_0001s24680 (6:270)	scaffold_1:23925008-23925542(-) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT5G24318.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g114760.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3170.1.S1_at	B	B1S	POPTR_0002s06280	POPTR_0002s06280 (8:459)	NA	NA	NA	NA	AT5G36120.1	"cofactor assembly, complex C (B6F) "	LOC_Os01g73540.1	"YGGT family protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
Ptp.3171.1.S1_a_at	B	B1S	POPTR_0014s12350	POPTR_0014s12350 (6:75)	NA	NA	NA	NA	AT3G62880.2	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	NA	NA	Medtr1g108360.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.3182.1.A1_at	B	B1S	POPTR_0011s15790	POPTR_0011s15790 (4:72)	scaffold_11:17854154-17854570(-) (11)	NA	NA	NA	AT2G36840.1	ACT-like superfamily protein 	LOC_Os09g39740.1	"ACT domain containing protein, expressed"	Medtr7g124000.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
Ptp.3185.1.S1_at	B	B1S	POPTR_0008s03810	POPTR_0008s03810 (0:296)	NA	NA	Q43052	Phenylalanine ammonia-lyase G2B	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os02g41650.3	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
Ptp.3185.1.S1_x_at	B	B1S	POPTR_0008s03810	POPTR_0008s03810 (1:335)	NA	NA	Q43052	Phenylalanine ammonia-lyase G2B	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os02g41650.3	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
Ptp.3187.1.S1_at	B	B1S	POPTR_0008s17690	POPTR_0008s17690 (8:468)	NA	NA	Q9C9N5	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830	AT1G67510.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g13300.1	expressed protein	Medtr7g076330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.3189.1.S1_at	B	B1S	POPTR_1063s00200	POPTR_1063s00200 (2:1540)	NA	NA	Q6XAT2	LRR receptor-like serine/threonine-protein kinase ERL2	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os04g52640.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr7g009400.1	"Tyrosine protein kinase, active site "	NA	GO:0005515|protein binding	NA
Ptp.3202.1.S1_at	B	B1S	POPTR_0018s12340	POPTR_0018s12340 (8:160)	NA	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G25270.1	Ubiquitin-like superfamily protein 	LOC_Os08g19830.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3206.1.S1_at	B	B1S	POPTR_0016s03730	POPTR_0016s03730 (3:241)	NA	NA	NA	NA	AT3G57030.1	Calcium-dependent phosphotriesterase superfamily protein 	NA	NA	Medtr7g107350.1	"Strictosidine synthase; TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3207.1.S1_at	B	B1S	POPTR_0002s13750	POPTR_0002s13750 (1:390)	NA	NA	Q86BN8	Protein-tyrosine phosphatase mitochondrial 1-like protein	AT2G35680.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os10g41240.1	"dual specificity protein phosphatase, putative, expressed"	Medtr8g105260.2	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.3209.1.S1_s_at	B	B1S	POPTR_0015s00710	POPTR_0015s00710 (7:417)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3211.1.S1_at	B	B1S	POPTR_0005s20360	POPTR_0005s20360 (8:499)	NA	NA	NA	NA	AT1G77400.1	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes - 56 (source: NCBI BLink). 	NA	NA	Medtr3g100690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3215.1.S1_at	B	B1S	POPTR_0004s01690	POPTR_0004s01690 (6:466)	scaffold_4:1016748-1017353(-) (10)	NA	O13759	RNA-binding post-transcriptional regulator csx1	AT1G11650.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g37270.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3216.1.S1_at	B	B1S	POPTR_0009s06840	POPTR_0009s06840 (5:92)	NA	NA	Q9LHJ8	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	AT3G12630.1	A20/AN1-like zinc finger family protein 	LOC_Os09g31200.1	"AN1-like zinc finger domain containing protein, expressed"	Medtr3g030430.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.3221.2.S1_at	B	B1S	POPTR_0019s09670	POPTR_0019s09670 (0:306)	NA	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.3225.1.S1_at	B	B1S	POPTR_0008s03540	POPTR_0008s03540 (7:765)	NA	NA	P35159	Ribosomal large subunit pseudouridine synthase B	AT2G39140.1	pseudouridine synthase family protein 	LOC_Os03g05806.1	"pseudouridine synthase family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.3226.1.S1_s_at	B	B1S	POPTR_0014s06610	POPTR_0014s06610 (8:436)	NA	NA	Q9LPC4	Pentatricopeptide repeat-containing protein At1g01970	AT1G01970.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g46730.2	"PPR repeat domain containing protein, putative, expressed"	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.323.1.S1_at	B	B2S	POPTR_0005s11600	POPTR_0005s11600 (0:297)//POPTR_0005s11610 (0:296)	NA	NA	Q07353	"Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)"	AT3G51240.1	flavanone 3-hydroxylase 	LOC_Os04g56700.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr8g089960.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3230.1.S1_at	B	B2S	POPTR_0012s10390	POPTR_0012s10390 (5:693)//POPTR_0012s08480 (0:550)	NA	NA	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr7g018130.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
Ptp.3234.1.S1_at	B	B1S	POPTR_0010s17700	POPTR_0010s17700 (5:367)	NA	NA	NA	NA	AT4G33540.1	metallo-beta-lactamase family protein 	LOC_Os02g58270.1	"metallo-beta-lactamase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3236.1.S1_at	B	B2S	POPTR_0002s11560	POPTR_0002s11560 (3:858)//POPTR_0002s11570 (2:78)	NA	NA	NA	NA	AT1G44920.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3054 (InterPro:IPR021414); Has 246 Blast hits to 246 proteins in 119 species: Archae - 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os03g51930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3241.1.S1_at	B	B1S	POPTR_0016s07720	POPTR_0016s07720 (0:1403)	NA	NA	Q05B62	Sorting nexin-1	AT5G06140.1	sorting nexin 1 	LOC_Os01g64280.1	"sorting nexin 1, putative, expressed"	Medtr5g081470.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
Ptp.3252.1.S1_at	B	B1S	POPTR_0012s10140	POPTR_0012s10140 (6:88)	NA	NA	O13965	Meiotically up-regulated gene 70 protein	AT5G50530.1	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os01g69900.1	"CBS domain-containing protein, putative, expressed"	Medtr3g150700.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.326.1.S1_at	B	B1S	POPTR_0008s20800	POPTR_0008s20800 (0:91)	NA	NA	Q5R824	Carbohydrate kinase domain-containing protein	AT5G19150.2	pfkB-like carbohydrate kinase family protein 	LOC_Os11g17610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.326.1.S1_s_at	B	B1S	POPTR_0008s20800	POPTR_0008s20800 (8:434)	scaffold_8:14782356-14782930(-) (11)	NA	Q5R824	Carbohydrate kinase domain-containing protein	AT5G19150.2	pfkB-like carbohydrate kinase family protein 	LOC_Os11g17610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3261.1.S1_at	B	B1S	POPTR_0005s22090	POPTR_0005s22090 (7:511)	NA	NA	NA	NA	AT5G36120.1	"cofactor assembly, complex C (B6F) "	LOC_Os01g73540.1	"YGGT family protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
Ptp.3267.1.S1_at	B	B1S	POPTR_0001s26070	POPTR_0001s26070 (7:2407)	NA	NA	O80934	"Uncharacterized protein At2g37660, chloroplastic"	AT4G31530.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g23980.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC202568_1.1	NAD-dependent epimerase/dehydratase AC202568.9 6468-9775 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3277.1.S1_at	B	B2S	POPTR_0007s05890	POPTR_0007s05910 (0:323)//POPTR_0007s05890 (4:323)	NA	NA	P24792	L-ascorbate oxidase	AT4G39830.1	Cupredoxin superfamily protein 	LOC_Os09g20090.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3278.1.S1_at	B	B1S	POPTR_0010s12800	POPTR_0010s12800 (0:17)	scaffold_10:12787536-12787758(+) (11)	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G01150.1	RING-H2 finger protein 2B 	LOC_Os02g45710.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235678_1.1	"Zinc finger, RING-type AC235678.1 702-1 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3278.1.S1_s_at	B	B1S	POPTR_0010s12800	POPTR_0010s12800 (4:163)	scaffold_10:12787390-12787877(+) (11)	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G01150.1	RING-H2 finger protein 2B 	LOC_Os02g45710.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235678_1.1	"Zinc finger, RING-type AC235678.1 702-1 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3286.1.S1_at	B	B1S	POPTR_0007s07040	POPTR_0007s07040 (6:539)	NA	NA	Q9FPS0	Ubiquitin carboxyl-terminal hydrolase 27	AT4G39370.3	ubiquitin-specific protease 27 	LOC_Os04g34984.3	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr4g141410.1	"Ubiquitin carboxyl-terminal hydrolase 27, related "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.3290.2.S1_at	B	B1S	POPTR_0007s07760	POPTR_0007s07760 (6:1885)	NA	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.3300.1.A1_at	B	B1S	POPTR_0010s04620	POPTR_0010s04620 (7:667)	NA	NA	Q7G764	Probable NAD(P)H-dependent oxidoreductase 1	AT1G59960.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g02490.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g106150.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.3300.2.S1_at	B	B1S	POPTR_0010s04620	POPTR_0010s04620 (5:162)	NA	NA	Q7G764	Probable NAD(P)H-dependent oxidoreductase 1	AT1G59960.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g02490.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g106150.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.3308.1.S1_at	B	B2S	POPTR_0008s11410	POPTR_0008s11410 (0:358)//POPTR_0010s02840 (0:355)	NA	NA	NA	NA	AT3G21550.1	DUF679 domain membrane protein 2 	LOC_Os03g25440.1	expressed protein	Medtr2g025940.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3311.1.S1_at	B	B1S	POPTR_0009s09720	POPTR_0009s09720 (5:501)	NA	NA	Q1G3M2	UPF0631 protein At3g19508	AT3G19508.1	unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g24020.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3314.1.S1_at	B	B1S	POPTR_0006s04450	POPTR_0006s04450 (6:494)	NA	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT5G03960.1	IQ-domain 12 	LOC_Os03g23960.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr4g118520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3317.1.S1_at	B	B1S	POPTR_0001s37840	POPTR_0001s37840 (0:14)	NA	NA	Q9SUA4	Oligopeptide transporter 5	AT4G26590.1	oligopeptide transporter 5 	LOC_Os08g38400.1	"oligopeptide transporter, putative, expressed"	Medtr5g103810.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3326.1.S1_at	B	B1S	POPTR_0005s00580	POPTR_0005s00580 (8:526)	NA	NA	Q9Y4F3	Limkain-b1	AT3G62200.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os07g44320.1	expressed protein	AC235094_25.1	Protein of unknown function DUF537 AC235094.1 130248-133379 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3331.1.A1_at	B	B1S	POPTR_0018s12390	POPTR_0018s12390 (7:443)	NA	NA	NA	NA	AT2G12400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3341.1.S1_at	B	B1S	POPTR_0005s02140	POPTR_0005s02140 (3:106)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3345.1.S1_at	B	B1S	POPTR_0015s15340	POPTR_0015s15340 (6:378)	NA	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02790.1	"protein kinase domain containing protein, expressed"	Medtr1g034520.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3349.1.A1_s_at	B	B1S	POPTR_0004s06320	POPTR_0004s06320 (8:57)	NA	NA	Q55GU0	Probable serine/threonine-protein kinase DDB_G0267514	AT4G18950.1	Integrin-linked protein kinase family 	LOC_Os01g54480.1	"serine/threonine protein kinase, putative, expressed"	Medtr5g099160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.335.1.S1_s_at	B	B1S	POPTR_0014s11100	POPTR_0014s11100 (8:315)	scaffold_14:8264878-8265391(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3356.1.S1_at	B	B1S	POPTR_0001s12810	POPTR_0001s12810 (7:380)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3365.1.S1_at	B	B1S	POPTR_0013s01760	POPTR_0013s01760 (3:618)	NA	NA	Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G27730.1	Protein of unknown function (DUF1624) 	LOC_Os01g70550.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr7g138520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3366.1.S1_at	B	B1S	POPTR_0012s07070	POPTR_0012s07070 (2:390)	NA	NA	Q9QXN3	Activating signal cointegrator 1	AT3G47610.1	transcription regulators;zinc ion binding 	LOC_Os09g24660.1	"AGAP000554-PA, putative, expressed"	Medtr8g112270.1	"Zinc finger, C2HC5-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0030528|transcription regulator activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.3369.1.S1_at	B	B1S	POPTR_0011s10910	POPTR_0011s10910 (7:505)	NA	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3371.1.S1_at	B	B4S	POPTR_0019s01270	POPTR_0019s03980 (4:1435)//POPTR_0019s01270 (6:1178)//POPTR_0019s01290 (3:1117)//POPTR_0019s01420 (1:293)	NA	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
Ptp.3372.2.A1_at	B	B1A	POPTR_0006s22410	POPTR_0006s22410 (7:282)	scaffold_6:21427926-21428352(-) (10)	NA	NA	NA	AT3G11591.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3374.1.S1_at	B	B1S	POPTR_0014s07690	POPTR_0014s07690 (0:1022)	NA	NA	Q8RXK6	DEAD-box ATP-dependent RNA helicase 8	AT4G00660.1	RNAhelicase-like 8 	LOC_Os04g45040.3	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g084670.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.3375.3.S1_at	B	B1S	POPTR_0016s02690	POPTR_0016s02690 (8:694)	scaffold_16:1332769-1333553(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.338.1.A1_at	B	B1S	POPTR_0013s05190	POPTR_0013s05190 (1:189)	NA	NA	NA	NA	AT5G32450.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g53770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g102810.1	"Aldo/keto reductase; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3383.1.S1_at	B	B1S	POPTR_0004s17010	POPTR_0004s17010 (0:227)	NA	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G21270.2	ubiquitin fusion degradation 1 	LOC_Os02g08480.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.3387.1.S1_at	B	B1S	POPTR_0008s15240	POPTR_0008s15240 (8:569)	scaffold_8:10185579-10186150(-) (9)	NA	NA	NA	AT1G05385.1	photosystem II 11 kDa protein-related 	LOC_Os03g53640.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3388.1.S1_at	B	B1S	POPTR_0014s14050	POPTR_0014s14050 (4:203)	NA	NA	Q60HE9	Lysosomal alpha-mannosidase	AT5G13980.2	Glycosyl hydrolase family 38 protein 	LOC_Os11g32260.1	"lysosomal alpha-mannosidase precursor, putative, expressed"	Medtr3g151240.2	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0044262|cellular carbohydrate metabolic process||GO:0006013|mannose metabolic process||GO:0044281|small molecule metabolic process	GO:0008270|zinc ion binding||GO:0004559|alpha-mannosidase activity	NA
Ptp.3390.1.S1_at	B	B1S	POPTR_0019s08460	POPTR_0019s08460 (6:252)	scaffold_19:10003216-10003508(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3396.1.S1_at	B	B1S	POPTR_0005s18240	POPTR_0005s18240 (8:138)	NA	NA	O22042	Mitogen-activated protein kinase kinase kinase 3	AT5G67080.1	mitogen-activated protein kinase kinase kinase 19 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3398.1.S1_at	B	B1S	POPTR_0011s08930	POPTR_0011s08930 (8:2451)	NA	NA	O32107	Uncharacterized membrane protein yuiD	AT3G21610.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os01g67560.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3408.1.S1_at	B	B1S	POPTR_0009s07200	POPTR_0009s07200 (6:161)	NA	NA	Q55DL0	Dihydropyrimidinase	AT5G12200.1	pyrimidine 2 	LOC_Os01g59340.3	"dihydropyrimidinase, putative, expressed"	Medtr5g096380.1	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
Ptp.3412.1.S1_at	B	B1S	POPTR_0001s05550	POPTR_0001s05550 (6:510)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3415.1.S1_at	B	B1S	POPTR_0016s14650	POPTR_0016s14650 (8:1353)	NA	NA	P27061	Acid phosphatase 1	AT2G38600.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os03g21480.1	"HAD superfamily phosphatase, putative, expressed"	Medtr8g005380.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
Ptp.3417.1.S1_at	B	B1S	POPTR_0001s22790	POPTR_0001s22790 (5:300)	NA	NA	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os05g41070.1	"bZIP transcription factor, putative, expressed"	Medtr5g095290.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3419.1.S1_at	B	B1S	POPTR_0005s05520	POPTR_0005s05520 (8:326)	NA	NA	P0CB66	Putative mediator of RNA polymerase II transcription subunit 14	AT3G04740.1	RNA polymerase II transcription mediators 	LOC_Os09g10960.1	"SWP, putative, expressed"	Medtr1g106750.1	"SWP, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.3420.1.S1_at	B	B1S	POPTR_0001s21920	POPTR_0001s21920 (7:465)	NA	NA	Q4ZIN3	Membralin	AT1G60995.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Membralin (InterPro:IPR019144); Has 172 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). 	LOC_Os03g45770.1	expressed protein	Medtr2g006940.1	"S3 self-incompatibility locus-linked pollen 3.15 protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3422.1.S1_at	B	B1S	POPTR_0019s13920	POPTR_0019s13920 (0:385)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3423.1.S1_at	B	B1S	POPTR_0003s14340	POPTR_0003s14340 (5:445)	NA	NA	Q9LIR6	"Beta-amylase 1, chloroplastic"	AT3G23920.1	beta-amylase 1 	LOC_Os01g13550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.3425.1.S1_at	B	B1S	POPTR_0014s07940	POPTR_0014s07940 (3:322)	NA	NA	O80831	Beta-amylase 7	AT2G45880.1	beta-amylase 7 	LOC_Os09g39570.1	"beta-amylase, putative, expressed"	Medtr5g026370.1	"Glycoside hydrolase, family 14; BZR1, transcriptional repressor "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.3428.1.S1_at	B	B1S	POPTR_0001s28360	POPTR_0001s28360 (3:284)	NA	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G19420.2	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os01g72320.1	"FYVE zinc finger domain containing protein, expressed"	Medtr5g096940.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3434.1.S1_at	B	B1S	POPTR_0014s03890	POPTR_0014s03890 (7:443)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3436.1.S1_at	B	B1S	POPTR_0017s13290	POPTR_0017s13290 (8:231)	NA	NA	Q8BGF9	Solute carrier family 25 member 44	AT5G15640.1	Mitochondrial substrate carrier family protein 	LOC_Os03g54760.1	"mitochondrial carrier protein, putative, expressed"	Medtr2g036920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3437.1.S1_at	B	B1S	POPTR_0009s09740	POPTR_0009s09740 (6:69)	NA	NA	Q9UBZ9	DNA repair protein REV1	AT5G44750.1	DNA-directed DNA polymerases 	LOC_Os06g47580.2	"REV1, putative, expressed"	Medtr5g005380.1	UMUC-like DNA-repair protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	GO:0005622|intracellular
Ptp.3439.1.S1_at	B	B1S	POPTR_0010s02090	POPTR_0010s02090 (5:236)	NA	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
Ptp.3441.1.S1_at	B	B1S	POPTR_0005s18630	POPTR_0005s18630 (6:2263)	NA	NA	Q9M3H5	"Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic"	AT4G37270.1	heavy metal atpase 1 	LOC_Os06g47550.1	"cadmium/zinc-transporting ATPase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3446.1.S1_at	B	B1S	POPTR_0001s29580	POPTR_0001s29580 (5:367)	NA	NA	NA	NA	AT4G37820.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1); Has 433572 Blast hits to 177005 proteins in 4263 species: Archae - 2016; Bacteria - 67591; Metazoa - 157995; Fungi - 49745; Plants - 22011; Viruses - 2192; Other Eukaryotes - 132022 (source: NCBI BLink). 	LOC_Os06g36050.1	expressed protein	AC235005_3.1	hypothetical protein AC235005.1 9201-11167 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3448.1.S1_at	B	B1S	POPTR_0014s03510	POPTR_0014s03510 (4:1071)	NA	NA	Q8GZD4	Nucleobase-ascorbate transporter 3	AT2G26510.1	Xanthine/uracil permease family protein 	LOC_Os12g39420.9	"nucleobase-ascorbate transporter, putative, expressed"	Medtr1g025100.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3452.2.A1_at	B	B1S	POPTR_0008s19980	POPTR_0008s19980 (3:1194)	NA	NA	NA	NA	NA	NA	LOC_Os12g35060.3	expressed protein	Medtr4g142730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3453.1.S1_at	B	B1S	POPTR_0003s11960	POPTR_0003s11960 (8:1574)	NA	NA	O82743	Agamous-like MADS-box protein AGL19	AT4G22950.1	AGAMOUS-like 19 	LOC_Os10g39130.1	"OsMADS56 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.3455.1.A1_at	B	B1S	POPTR_0002s10100	POPTR_0002s10100 (3:328)	NA	NA	Q3UVG3	Protein FAM91A1	AT1G35220.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 313 Blast hits to 185 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). 	LOC_Os01g19760.1	expressed protein	Medtr5g093200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3458.1.S1_at	B	B1S	POPTR_0010s10320	POPTR_0010s10320 (8:543)	NA	NA	Q9ZVH4	Cullin-3A	AT1G26830.1	cullin 3 	LOC_Os02g51180.1	"cullin, putative, expressed"	AC146568_13.1	Cullin; Winged helix repressor DNA-binding AC146568.11 77878-70908 E EGN_Mt090430 200	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.3459.1.S1_at	B	B1S	POPTR_0003s08120	POPTR_0003s08120 (3:425)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3463.1.S1_at	B	B1S	POPTR_0001s16330	POPTR_0001s16330 (1:677)	NA	NA	NA	NA	AT3G14280.1	unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g026570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.347.1.A1_at	B	B1S	POPTR_0006s24250	POPTR_0006s24250 (6:428)	NA	NA	NA	NA	AT5G11960.1	Protein of unknown function (DUF803) 	LOC_Os01g51190.1	expressed protein	Medtr1g019910.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.3470.1.S1_at	B	B1S	POPTR_0013s00840	POPTR_0013s00840 (3:466)	NA	NA	NA	NA	AT1G09320.1	agenet domain-containing protein 	LOC_Os05g04180.1	"agenet domain containing protein, putative, expressed"	Medtr2g037560.1	SH3; Agenet 	NA	GO:0003723|RNA binding	NA
Ptp.3471.2.A1_at	B	B1S	POPTR_0001s23850	POPTR_0001s23850 (4:505)	NA	NA	NA	NA	AT2G44300.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g07100.1	"LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g105470.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3472.1.A1_at	B	B1S	POPTR_0019s08120	POPTR_0019s08120 (6:414)	NA	NA	Q55158	Riboflavin biosynthesis protein ribD	AT3G47390.2	cytidine/deoxycytidylate deaminase family protein 	LOC_Os02g27340.1	"riboflavin biosynthesis protein ribD, putative, expressed"	Medtr7g089780.1	"CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal; Conserved hypothetical protein CHP02464 "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008703|5-amino-6-(5-phosphoribosylamino)uracil reductase activity||GO:0008270|zinc ion binding||GO:0016787|hydrolase activity	NA
Ptp.3473.1.S1_at	B	B1S	POPTR_0008s09810	POPTR_0008s09810 (6:380)	NA	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.3475.1.S1_at	B	B1S	POPTR_0002s11130	POPTR_0002s11130 (7:479)	NA	NA	NA	NA	AT1G58250.1	Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain 	LOC_Os03g23030.1	"aberrant pollen transmission 1, putative, expressed"	Medtr5g075570.1	"SAB, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3479.2.S1_at	B	B1S	POPTR_0015s05510	POPTR_0015s05510 (1:2161)	NA	NA	Q9WTW5	Solute carrier family 22 member 3	AT1G73220.1	organic cation/carnitine transporter1 	LOC_Os07g37510.1	"organic cation transporter-related, putative"	Medtr4g031840.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3482.1.S1_at	B	B1S	POPTR_0006s09110	POPTR_0006s09110 (0:278)	NA	NA	NA	NA	AT5G02090.1	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g38264.1	expressed protein	Medtr4g018920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3485.1.S1_at	B	B1S	POPTR_0009s05370	POPTR_0009s05370 (8:527)	NA	NA	Q9W0T1	Nucleosome-remodeling factor subunit NURF301	AT5G12400.1	DNA binding;zinc ion binding;DNA binding 	LOC_Os07g46690.1	"PHD-finger family protein, expressed"	Medtr4g103750.1	"Immunoglobulin/major histocompatibility complex; DDT; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3486.1.S1_at	B	B1S	POPTR_0014s09040	POPTR_0014s09040 (6:552)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3487.1.S1_at	B	B1S	POPTR_0001s21840	POPTR_0001s21840 (2:310)	NA	NA	Q90515	Transmembrane emp24 domain-containing protein 10	AT1G09580.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os02g52920.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr4g137560.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
Ptp.3496.1.S1_at	B	B1S	POPTR_0005s19200	POPTR_0005s19200 (6:565)	NA	NA	Q5RC80	RNA-binding protein 39	AT5G09880.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3511.1.S1_at	B	B1S	POPTR_0002s11210	POPTR_0002s11210 (0:402)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3517.1.S1_at	B	B2S	POPTR_0184s00210	POPTR_0184s00210 (4:290)//POPTR_0002s19540 (0:182)	NA	NA	Q10MH8	DEAD-box ATP-dependent RNA helicase 24	AT2G47330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g19530.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g133130.1	"Helicase, C-terminal; ; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.3525.1.S1_at	B	B1S	POPTR_0002s26430	POPTR_0002s26430 (0:152)	NA	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3528.1.S1_at	B	B1S	POPTR_0005s19370	POPTR_0005s19370 (2:691)	NA	NA	Q9SUG3	Inositol-tetrakisphosphate 1-kinase 2	AT4G08170.2	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os03g12840.2	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr5g005520.1	"Ribosomal protein L19; Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
Ptp.3531.1.S1_at	B	B1S	POPTR_0006s08180	POPTR_0006s08180 (8:473)	NA	NA	NA	NA	AT5G24710.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g46510.1	"peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed"	Medtr7g134460.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3533.1.A1_at	B	B1S	POPTR_0007s09430	POPTR_0007s09430 (8:386)	NA	NA	Q9CSH3	Exosome complex exonuclease RRP44	AT2G17510.1	ribonuclease II family protein 	LOC_Os03g03710.1	"ribonuclease protein, putative, expressed"	Medtr8g087680.1	"Ribonuclease II; Nucleotide binding protein, PINc "	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
Ptp.3535.1.A1_at	B	B1S	POPTR_0006s01720	POPTR_0006s01720 (8:173)	scaffold_6:1053977-1054208(-) (10)	NA	Q8H125	Scarecrow-like protein 5	AT4G17230.1	SCARECROW-like 13 	LOC_Os10g22430.1	"gibberellin response modulator protein, putative, expressed"	Medtr8g148340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3540.1.A1_at	B	B1S	POPTR_0015s01950	POPTR_0015s01950 (0:423)	NA	NA	Q03460	"Glutamate synthase [NADH], amyloplastic"	AT5G53460.3	NADH-dependent glutamate synthase 1 	LOC_Os01g48960.1	"glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process||GO:0044281|small molecule metabolic process	GO:0015930|glutamate synthase activity||GO:0050660|FAD binding	NA
Ptp.3543.1.S1_at	B	B1S	POPTR_0010s04560	POPTR_0010s04560 (7:350)	NA	NA	Q8VXV4	Chaperone protein dnaJ 16	AT1G24120.1	ARG1-like 1 	LOC_Os02g50760.2	"heat shock protein DnaJ, putative, expressed"	Medtr5g036860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3546.1.S1_at	B	B1S	POPTR_0009s12520	POPTR_0009s12520 (5:376)	NA	NA	P39211	Xylulose kinase	AT2G21370.1	xylulose kinase-1 	LOC_Os07g22650.1	expressed protein	Medtr4g096720.1	"Carbohydrate kinase, FGGY "	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
Ptp.3549.1.S1_at	B	B1S	POPTR_0007s12320	POPTR_0007s12320 (8:516)	NA	NA	Q56XQ0	UPF0496 protein At2g18630	AT2G18630.1	Protein of unknown function (DUF677) 	LOC_Os03g10240.2	"DUF677 domain containing protein, putative, expressed"	Medtr5g019340.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3555.1.S1_at	B	B1A	POPTR_0004s20870	POPTR_0004s20870 (3:503)	NA	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039190.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.3556.1.S1_at	B	B1S	POPTR_0006s06280	POPTR_0006s06280 (1:99)	NA	NA	P60300	Putative chloride channel-like protein CLC-g	AT5G33280.1	Voltage-gated chloride channel family protein 	LOC_Os04g55210.1	"chloride channel protein, putative, expressed"	Medtr8g121690.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
Ptp.3563.1.S1_at	B	B1S	POPTR_0003s04120	POPTR_0003s04120 (7:100)	NA	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3568.1.S1_at	B	B1S	POPTR_0001s31300	POPTR_0001s31300 (8:543)	NA	NA	NA	NA	AT4G24290.2	MAC/Perforin domain-containing protein 	LOC_Os07g07194.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr4g144280.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3578.1.S1_at	B	B1S	POPTR_0005s05690	POPTR_0005s05690 (3:249)	NA	NA	Q3E8W4	Receptor-like protein kinase ANXUR2	AT5G28680.1	Malectin/receptor-like protein kinase family protein 	LOC_Os05g20150.1	"TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3582.1.S1_at	B	B1S	POPTR_0001s25140	POPTR_0001s25140 (8:506)	NA	NA	Q5ZMJ9	Serine/arginine repetitive matrix protein 1	AT2G29210.1	splicing factor PWI domain-containing protein 	LOC_Os03g16369.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g084280.1	Splicing factor PWI 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	NA
Ptp.3584.1.S1_at	B	B1S	POPTR_0018s08820	POPTR_0018s08820 (1:103)	NA	NA	B3CLY6	tRNA(Ile)-lysidine synthase	AT3G24560.2	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g16670.1	"ATP-binding domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3592.1.S1_at	B	B1S	POPTR_0002s23680	POPTR_0002s23680 (7:286)	NA	NA	P31828	Probable zinc protease pqqL	AT5G42390.1	Insulinase (Peptidase family M16) family protein 	LOC_Os06g41990.2	"M16 domain containing zinc peptidase, putative, expressed"	Medtr5g007490.1	"Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.3594.1.S1_at	B	B4S	POPTR_0011s02060	POPTR_0011s02060 (0:527)//POPTR_0011s02180 (0:374)//POPTR_0011s02130 (0:308)//POPTR_0011s02200 (0:308)	NA	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124540.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3597.1.S1_at	B	B1S	POPTR_0004s21820	POPTR_0004s21820 (7:414)	NA	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g106900.1	"Protein of unknown function DUF1981, SEC7 associated "	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
Ptp.3602.1.S1_at	B	B1S	POPTR_0006s09310	POPTR_0006s09310 (4:650)	NA	NA	P0CI03	Putative peptide/nitrate transporter At2g37900	AT2G37900.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3604.1.S1_at	B	B1S	POPTR_0002s20260	POPTR_0002s20260 (6:685)	NA	NA	O81122	Ethylene receptor	AT2G40940.1	ethylene response sensor 1 	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.3606.1.S1_at	B	B1S	POPTR_0009s16600	POPTR_0009s16600 (8:393)	NA	NA	NA	NA	AT5G22450.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73620.1	expressed protein	Medtr4g070070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3609.1.S1_at	B	B1S	POPTR_0007s02020	POPTR_0007s02020 (7:420)	NA	NA	Q620W3	Protein EFR3 homolog	AT1G05960.1	ARM repeat superfamily protein 	LOC_Os01g67290.1	"cyclin-related protein, putative, expressed"	Medtr2g118260.1	"cyclin-related protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3610.1.S1_at	B	B1S	POPTR_0008s15570	POPTR_0008s15570 (8:949)	NA	NA	Q8LAX0	Homocysteine S-methyltransferase 3	AT3G22740.1	homocysteine S-methyltransferase 3 	LOC_Os10g28630.1	"homocysteine S-methyltransferase protein, putative, expressed"	Medtr5g067080.1	Homocysteine S-methyltransferase 	NA	GO:0008898|homocysteine S-methyltransferase activity	NA
Ptp.3615.1.S1_at	B	B1S	POPTR_0005s23900	POPTR_0005s23900 (5:525)	NA	NA	Q99090	Light-inducible protein CPRF2	AT4G02640.2	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3617.1.S1_at	B	B1S	POPTR_0010s10980	POPTR_0010s10980 (5:311)	NA	NA	NA	NA	AT1G09290.1	unknown protein; Has 73 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os02g45090.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3621.1.S1_at	B	B2S	POPTR_0017s13770	POPTR_0017s13770 (7:949)//POPTR_0017s14590 (3:814)	NA	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.3624.1.S1_at	B	B1S	POPTR_0013s13350	POPTR_0013s13350 (8:138)	NA	NA	NA	NA	AT4G32480.1	Protein of unknown function (DUF506)  	LOC_Os01g54340.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr2g017370.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3625.1.A1_at	B	B1S	POPTR_0014s17220	POPTR_0014s17220 (7:372)	NA	NA	NA	NA	AT3G07560.1	peroxin 13 	LOC_Os07g05810.1	"glycine-rich protein, putative, expressed"	Medtr2g120540.1	"Glycine-rich protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3630.1.S1_at	B	B1S	POPTR_0005s15700	POPTR_0005s15700 (7:325)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3631.2.S1_at	B	B1S	POPTR_0001s44220	POPTR_0001s44220 (6:327)	NA	NA	Q8LDI5	Thioredoxin-like protein CXXS1	AT1G11530.1	C-terminal cysteine residue is changed to a serine 1 	NA	NA	Medtr4g111230.1	Thioredoxin fold; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3632.1.S1_at	B	B1S	POPTR_0003s07890	POPTR_0003s07890 (0:13)	scaffold_3:9400381-9400577(+) (11)	NA	Q2TBG8	Ubiquitin carboxyl-terminal hydrolase isozyme L3	AT4G17510.1	ubiquitin C-terminal hydrolase 3 	LOC_Os02g43760.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr8g105130.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	GO:0005622|intracellular
Ptp.3633.1.S1_at	B	B1A	POPTR_0001s26890	POPTR_0001s26890 (8:428)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3634.1.S1_at	B	B1S	POPTR_0005s19950	POPTR_0005s19950 (4:294)	scaffold_5:18946596-18946985(+) (10)	NA	NA	NA	AT1G44760.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g65440.1	"universal stress protein domain containing protein, putative, expressed"	Medtr3g097470.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.3635.1.S1_at	B	B1S	POPTR_0012s03610	POPTR_0012s03610 (5:127)	NA	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.3640.1.S1_at	B	B1S	POPTR_0002s06580	POPTR_0002s06580 (0:499)	NA	NA	NA	NA	AT4G09890.1	Protein of unknown function (DUF3511) 	LOC_Os06g47220.1	expressed protein	Medtr1g124780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3643.1.S1_at	B	B1S	POPTR_0015s04140	POPTR_0015s04140 (0:580)	NA	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3645.1.S1_at	B	B1S	POPTR_0001s06680	POPTR_0001s06680 (6:349)	NA	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT5G13530.1	protein kinases;ubiquitin-protein ligases 	LOC_Os05g32570.1	"RING E3 ligase protein, putative, expressed"	Medtr3g005700.1	"Protein kinase; NADH dehydrogenase (ubiquinone), chloroplast chain 5, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3647.1.S1_at	B	B1S	POPTR_0008s20610	POPTR_0008s20610 (7:543)	NA	NA	NA	NA	AT3G23590.1	REF4-related 1 	LOC_Os07g11000.1	"structural constituent of ribosome, putative, expressed"	Medtr2g026520.1	"REF4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3655.1.S1_at	B	B1S	POPTR_0014s16870	POPTR_0014s16870 (5:340)	NA	NA	Q9SSE5	Zinc finger protein CONSTANS-LIKE 9	AT3G07650.4	CONSTANS-like 9 	LOC_Os06g19444.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr3g106670.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3657.1.S1_at	B	B1S	POPTR_0005s24190	POPTR_0005s24190 (3:327)	NA	NA	NA	NA	AT2G30690.1	"Protein of unknown function, DUF593 "	LOC_Os03g58490.2	"DUF593 domain containing protein, expressed"	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3658.1.A1_at	B	B1S	POPTR_0003s19130	POPTR_0003s19130 (0:283)	NA	NA	A0JPP1	Dr1-associated corepressor	AT3G12480.1	"nuclear factor Y, subunit C11 "	LOC_Os05g41450.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g044480.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.3661.1.S1_at	B	B1S	POPTR_0013s14330	POPTR_0013s14330 (5:142)	NA	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G28220.1	NAD(P)H dehydrogenase B1 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.3664.1.S1_at	B	B1S	POPTR_0012s06410	POPTR_0012s06410 (8:470)	NA	NA	P36616	Protein kinase dsk1	AT4G35500.1	Protein kinase superfamily protein 	LOC_Os09g37949.1	"serine/threonine-protein kinase SRPK1, putative, expressed"	Medtr5g024280.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3666.1.S1_at	B	B1S	POPTR_0013s08330	POPTR_0013s08330 (7:384)	NA	NA	Q9M8R7	Probable protein phosphatase 2C 33	AT3G02750.2	Protein phosphatase 2C family protein 	LOC_Os08g39100.1	"protein phosphatase 2C, putative, expressed"	Medtr7g089830.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3668.1.S1_at	B	B1S	POPTR_0003s07640	POPTR_0003s07640 (4:255)	NA	NA	P97868	E3 ubiquitin-protein ligase RBBP6	AT5G47430.1	"DWNN domain, a CCHC-type zinc finger "	LOC_Os10g29560.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g105530.1	"DNA-binding protein-like, putative "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.3675.1.S1_at	B	B1S	POPTR_0003s13660	POPTR_0003s13660 (6:366)	NA	NA	P78382	CMP-sialic acid transporter	AT5G41760.2	Nucleotide-sugar transporter family protein 	LOC_Os06g33210.1	"UAA transporter family domain containing protein, expressed"	Medtr7g143690.1	UDP-galactose transporter; Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
Ptp.3680.1.S1_at	B	B1S	POPTR_0034s00300	POPTR_0034s00300 (0:23)	scaffold_34:171952-172070(+) (11)	NA	NA	NA	AT5G24860.1	flowering promoting factor 1 	LOC_Os02g26210.1	"flowering promoting factor-like 1, putative, expressed"	Medtr8g138840.1	"flowering promoting factor-like 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3685.1.S1_at	B	B1S	POPTR_0003s16750	POPTR_0003s16750 (7:1982)	NA	NA	Q9FYA2	Probable WRKY transcription factor 75	AT5G13080.1	WRKY DNA-binding protein 75 	LOC_Os11g29870.1	"OsWRKY72 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088920.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3689.1.S1_at	B	B1S	POPTR_0012s09130	POPTR_0012s09130 (6:325)	NA	NA	Q84W65	"SufE-like protein, chloroplastic"	AT5G50210.1	quinolinate synthase 	LOC_Os12g19304.2	"Fe-S metabolism associated domain containing protein, expressed"	Medtr3g102410.1	Fe-S metabolism associated SufE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3690.1.S1_at	B	B1S	POPTR_0016s07690	POPTR_0016s07690 (6:1151)	NA	NA	Q9FMR3	NAC domain-containing protein 90	AT5G22380.1	NAC domain containing protein 90 	LOC_Os05g37080.1	"No apical meristem protein, putative, expressed"	Medtr2g107600.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.3694.1.S1_at	B	B1S	POPTR_0008s11000	POPTR_0008s11000 (8:490)	NA	NA	Q96519	Peroxidase 11	AT1G68850.1	Peroxidase superfamily protein 	LOC_Os06g16350.1	"peroxidase precursor, putative, expressed"	Medtr5g091290.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.3695.1.S1_at	B	B1S	POPTR_0012s05180	POPTR_0012s05180 (7:614)	scaffold_12:4701758-4703090(+) (9)	NA	O81833	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	AT4G27300.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr6g027990.2	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3697.1.S1_at	B	B1S	POPTR_0006s23180	POPTR_0006s23180 (7:875)	NA	NA	NA	NA	AT5G02710.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240 proteins in 73 species: Archae - 10; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). 	LOC_Os03g24844.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3699.1.S1_at	B	B1S	POPTR_0001s33180	POPTR_0001s33180 (6:439)	NA	NA	A7IPQ1	50S ribosomal protein L15	AT5G64670.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os08g21840.1	"50S ribosomal protein L15, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.370.1.S1_at	B	B1S	POPTR_0012s14200	POPTR_0012s14200 (0:309)	NA	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3701.1.S1_at	B	B1S	POPTR_0010s23765	POPTR_0010s23765 (5:425)	NA	NA	NA	NA	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g024610.1	TIR; Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3706.1.S1_at	B	B1A	POPTR_0004s00490	POPTR_0004s00490 (5:697)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g021630.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3709.1.S1_at	B	B1S	POPTR_0016s08430	POPTR_0016s08430 (7:557)	NA	NA	Q8H8U5	Protein IN2-1 homolog B	AT5G02790.1	Glutathione S-transferase family protein 	LOC_Os03g17470.1	"IN2-1 protein, putative, expressed"	AC235022_17.1	Thioredoxin fold; Thioredoxin-like fold AC235022.1 105935-107691 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.371.2.S1_x_at	B	B1S	POPTR_0013s14780	POPTR_0013s14780 (2:124)	NA	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3711.1.S1_at	B	B1S	POPTR_0011s03350	POPTR_0011s03350 (7:132)	NA	NA	NA	NA	AT1G61740.1	Sulfite exporter TauE/SafE family protein 	LOC_Os01g57710.1	"membrane protein, putative, expressed"	Medtr2g010790.1	Protein of unknown function DUF81 	NA	NA	GO:0016021|integral to membrane
Ptp.3715.1.S1_at	B	B1S	POPTR_0015s10090	POPTR_0015s10090 (7:294)	NA	NA	Q9SJM0	Callose synthase 10	AT2G36850.1	glucan synthase-like 8 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.3716.1.S1_at	B	B1S	POPTR_0002s06620	POPTR_0002s06620 (6:172)	NA	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3718.1.S1_at	B	B1A	POPTR_0015s05740	POPTR_0015s05740 (6:331)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3719.1.S1_at	B	B1S	POPTR_0001s23790	POPTR_0001s23790 (2:152)	NA	NA	NA	NA	AT2G44340.1	VQ motif-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3721.1.A1_at	B	B1S	POPTR_0010s10920	POPTR_0010s10920 (1:28)	NA	NA	Q9FYJ6	Transcription factor bHLH111	AT1G31050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g28890.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3726.1.S1_at	B	B1S	POPTR_0011s02380	POPTR_0011s02380 (1:165)	NA	NA	Q9VW26	"Ornithine aminotransferase, mitochondrial"	AT5G46180.1	ornithine-delta-aminotransferase 	LOC_Os03g44150.1	"aminotransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.373.1.A1_at	B	B1S	POPTR_0005s07020	POPTR_0005s07020 (5:143)	NA	NA	Q9FFN4	Beta-galactosidase 6	AT5G63800.1	Glycosyl hydrolase family 35 protein 	LOC_Os05g35360.1	"beta-galactosidase 7 precursor, putative, expressed"	Medtr3g142640.1	Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3737.1.S1_at	B	B1S	POPTR_0001s22660	POPTR_0001s22660 (7:679)	NA	NA	Q869R9	Myb-like protein J	AT5G04760.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g34060.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3742.1.S1_a_at	B	B1S	POPTR_0002s06730	POPTR_0002s06730 (2:36)	NA	NA	Q6NPF9	"Thioredoxin Y1, chloroplastic"	AT1G76760.1	thioredoxin Y1 	LOC_Os01g73234.2	"thioredoxin, putative, expressed"	Medtr1g125070.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.3742.1.S1_at	B	B1S	POPTR_0002s06730	POPTR_0002s06730 (3:212)	scaffold_2:4535978-4536341(-) (11)	NA	Q6NPF9	"Thioredoxin Y1, chloroplastic"	AT1G76760.1	thioredoxin Y1 	LOC_Os01g73234.2	"thioredoxin, putative, expressed"	Medtr1g125070.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.3746.1.S1_at	B	B1A	POPTR_0009s00800	POPTR_0009s00800 (8:508)	NA	NA	Q96JG6	Coiled-coil domain-containing protein 132	AT2G27900.2	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os10g39910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3748.1.S1_at	B	B1S	POPTR_0010s07350	POPTR_0010s07350 (8:516)	NA	NA	Q8GT41	Putative invertase inhibitor	AT1G47960.1	cell wall / vacuolar inhibitor of fructosidase 1 	NA	NA	Medtr8g136770.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.3761.1.S1_at	B	B1S	POPTR_0002s17530	POPTR_0002s17530 (8:567)	NA	NA	NA	NA	AT1G01225.1	NC domain-containing protein-related 	LOC_Os08g43350.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3766.1.S1_at	B	B1S	POPTR_0001s16760	POPTR_0001s16760 (4:2083)	scaffold_1:13534319-13536607(-) (11)	NA	Q940X7	RING-box protein 1a	AT5G20570.1	RING-box 1 	LOC_Os02g47870.1	"anaphase-promoting complex subunit 11, putative, expressed"	Medtr2g103850.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3771.1.S1_at	B	B1S	POPTR_0001s21170	POPTR_0001s21170 (8:482)	NA	NA	NA	NA	AT1G80530.1	Major facilitator superfamily protein 	LOC_Os06g08110.1	"nodulin, putative, expressed"	Medtr8g122300.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3779.1.S1_at	B	B1S	POPTR_0005s24710	POPTR_0005s24710 (3:249)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3780.1.S1_at	B	B1S	POPTR_0004s06490	POPTR_0004s06490 (5:489)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3787.1.S1_at	B	B1S	POPTR_0009s15810	POPTR_0009s15810 (4:171)	NA	NA	Q39054	Molybdopterin biosynthesis protein CNX1	AT5G20990.1	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) 	LOC_Os04g56620.1	"molybdopterin biosynthesis protein CNX1, putative, expressed"	Medtr5g094600.1	"Bifunctional molybdenum cofactor molybdenum incorporation/glycine receptor, gephyrin "	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.3788.1.A1_at	B	B1S	POPTR_0014s10460	POPTR_0014s10460 (6:218)	scaffold_14:7809007-7809358(-) (11)	NA	NA	NA	AT4G01575.1	"serine protease inhibitor, Kazal-type family protein "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3789.1.A1_at	B	B1S	POPTR_0013s03300	POPTR_0013s03300 (8:370)	NA	NA	P82732	Putative defensin-like protein 184	AT3G04945.1	low-molecular-weight cysteine-rich 18 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3791.1.S1_at	B	B1S	POPTR_0012s04620	POPTR_0012s04620 (0:98)	NA	NA	Q9LMS3	Laccase-1	AT1G18140.1	laccase 1 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3794.1.S1_at	B	B4A	POPTR_0012s08240	POPTR_0008s15670 (7:411)//POPTR_0012s08240 (8:382)//POPTR_0014s17330 (5:328)//POPTR_0009s10490 (4:328)	NA	NA	NA	NA	AT1G70420.1	Protein of unknown function (DUF1645) 	LOC_Os05g50230.1	"DUF1645 domain containing protein, putative, expressed"	Medtr3g113750.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3798.1.S1_at	B	B1S	POPTR_0017s01710	POPTR_0017s01710 (2:171)	NA	NA	NA	NA	AT5G52530.3	dentin sialophosphoprotein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.381.1.A1_at	B	B1S	POPTR_0004s00800	POPTR_0004s00800 (0:530)	NA	NA	Q9Z2Y8	Proline synthase co-transcribed bacterial homolog protein	AT1G11930.2	"Predicted pyridoxal phosphate-dependent enzyme, YBL036C type "	LOC_Os05g05740.1	"proline synthetase co-transcribed bacterial homolog protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3817.1.S1_at	B	B1S	POPTR_0009s08810	POPTR_0009s08810 (5:267)	NA	NA	Q43117	"Pyruvate kinase isozyme A, chloroplastic"	AT3G22960.1	Pyruvate kinase family protein 	LOC_Os03g46910.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.382.1.A1_at	B	B1S	POPTR_0013s03780	POPTR_0013s03780 (0:305)	NA	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
Ptp.3820.1.S1_at	B	B1S	POPTR_0016s09210	POPTR_0016s09210 (1:262)	NA	NA	Q9S814	Ethylene-insensitive protein 2	AT5G03280.1	NRAMP metal ion transporter family protein 	LOC_Os07g06130.3	"ethylene-insensitive protein, putative, expressed"	Medtr7g121800.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.383.1.A1_at	B	B1S	POPTR_0004s10980	POPTR_0004s10980 (5:129)	scaffold_4:9541198-9541416(-) (9)	NA	Q9FWA4	Probable galacturonosyltransferase 9	AT3G02350.1	galacturonosyltransferase 9 	LOC_Os02g29530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	AC146721_10.1	"Glycosyl transferase, family 8 AC146721.7 49734-45961 E EGN_Mt090430 200"	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.3830.1.A1_at	B	B1S	POPTR_0001s31750	POPTR_0001s31750 (4:304)	NA	NA	Q94FT4	Salutaridinol 7-O-acetyltransferase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g10420.1	"transferase family domain containing protein, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.3833.1.S1_at	B	B1S	POPTR_0002s02350	POPTR_0002s02350 (6:421)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g031210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3834.1.S1_at	B	B1S	POPTR_0001s42640	POPTR_0001s42640 (6:459)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g068530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3837.2.S1_at	B	B1S	POPTR_0001s28500	POPTR_0001s28500 (8:559)	NA	NA	P49078	Asparagine synthetase [glutamine-hydrolyzing]	AT3G47340.1	glutamine-dependent asparagine synthase 1 	LOC_Os06g15420.1	"asparagine synthetase, putative, expressed"	Medtr5g079660.1	Asparagine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006529|asparagine biosynthetic process	GO:0004066|asparagine synthase (glutamine-hydrolyzing) activity	NA
Ptp.3845.1.S1_at	B	B1S	POPTR_0010s10080	POPTR_0010s10080 (7:288)	NA	NA	Q8GYM6	Cyclin-T1-4	AT4G19600.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr1g132790.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3851.1.A1_at	B	B1S	POPTR_0005s15240	POPTR_0005s15240 (8:512)	NA	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT5G38210.1	Protein kinase family protein 	LOC_Os01g04409.1	"OsWAK1 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.2	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3854.1.S1_at	B	B1S	POPTR_0010s13790	POPTR_0010s13790 (5:514)	NA	NA	Q9LQU4	Uncharacterized protein At1g14870	AT1G68630.1	PLAC8 family protein 	LOC_Os02g36940.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g129520.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3855.3.S1_at	B	B1S	POPTR_0009s04320	POPTR_0009s04320 (8:277)	NA	NA	NA	NA	AT5G59080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3859.1.S1_a_at	B	B1S	POPTR_0004s10000	POPTR_0004s10000 (8:234)	NA	NA	Q84L31	Putative DNA repair protein RAD23-3	AT3G02540.3	Rad23 UV excision repair protein family 	LOC_Os09g24200.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
Ptp.3863.1.S1_at	B	B1S	POPTR_0014s01670	POPTR_0014s01670 (0:1163)	NA	NA	O22193	U-box domain-containing protein 4	AT3G01400.1	ARM repeat superfamily protein 	LOC_Os03g32100.1	"spotted leaf 11, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3866.1.S1_at	B	B1S	POPTR_0001s04600	POPTR_0001s04600 (0:485)	NA	NA	NA	NA	AT1G11880.1	"transferases, transferring hexosyl groups "	LOC_Os12g31480.1	"GPI mannosyltransferase 2, putative, expressed"	Medtr4g114500.1	Protein of unknown function DUF409 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3876.1.S1_at	B	B1S	POPTR_0001s28740	POPTR_0001s28740 (0:143)	NA	NA	P0C895	LRR repeats and ubiquitin-like domain-containing protein At2g30105	AT2G30105.1	"CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1). "	LOC_Os10g31790.1	"ubiquitin family protein, putative, expressed"	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.3878.1.S1_at	B	B1S	POPTR_0008s17870	POPTR_0008s17870 (8:131)	NA	NA	NA	NA	AT1G27850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink). 	LOC_Os12g13670.2	expressed protein	Medtr3g103410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3886.1.S1_at	B	B3S	POPTR_1066s00210	POPTR_1066s00210 (3:543)//POPTR_1066s00200 (2:371)//POPTR_0011s13790 (2:371)	NA	NA	P01089	2S albumin	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3888.1.S1_at	B	B1S	POPTR_0012s12020	POPTR_0012s12020 (8:1531)	scaffold_12:12349644-12351175(-) (9)	NA	Q9LYR5	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 7, chloroplastic"	AT4G19830.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os02g07220.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr7g006110.1	hypothetical protein 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.3891.1.S1_at	B	B1S	POPTR_0008s20860	POPTR_0008s20860 (4:636)	NA	NA	NA	NA	AT3G06070.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g146290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3896.1.S1_at	B	B1S	POPTR_0001s36270	POPTR_0001s36270 (8:271)	NA	NA	NA	NA	AT5G40690.1	"CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os05g23130.1	expressed protein	Medtr4g079730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3897.1.S1_at	B	B1S	POPTR_0001s03630	POPTR_0001s03630 (5:362)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3898.1.S1_at	B	B1S	POPTR_0016s06400	POPTR_0016s06400 (7:1052)	NA	NA	Q8LGG8	Universal stress protein A-like protein	AT3G11930.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os10g30150.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.390.1.A1_at	B	B1S	POPTR_0002s20660	POPTR_0002s20660 (0:86)	NA	NA	Q8LEA8	Phytochrome A-associated F-box protein	AT4G02440.1	F-box family protein 	LOC_Os05g30190.1	"phytochrome A-associated F-box protein, putative, expressed"	Medtr8g068260.1	"Phytochrome A-associated F-box protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3901.1.S1_at	B	B1S	POPTR_0014s05080	POPTR_0014s05080 (2:1415)	scaffold_14:3880233-3881882(+) (9)	NA	NA	NA	AT1G02160.1	Cox19 family protein (CHCH motif) 	NA	NA	Medtr7g047590.1	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3906.1.S1_at	B	B1S	POPTR_0002s04350	POPTR_0002s04350 (1:266)	NA	NA	P82381	Proteinase inhibitor	AT2G38870.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr1g089920.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
Ptp.3908.1.S1_at	B	B1S	POPTR_0013s01930	POPTR_0013s01930 (8:525)	NA	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g27190.1	"C2 domain containing protein, putative, expressed"	Medtr8g138850.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3916.1.S1_at	B	B1S	POPTR_0009s05010	POPTR_0009s05010 (6:523)	NA	NA	Q56Y11	Dehydrodolichyl diphosphate synthase 2	AT5G58770.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os01g63830.1	"dehydrodolichyl diphosphate synthase, putative, expressed"	Medtr5g078680.1	Di-trans-poly-cis-decaprenylcistransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
Ptp.3919.1.S1_at	B	B1S	POPTR_0008s05780	POPTR_0008s05780 (7:386)	scaffold_8:3355314-3355789(+) (10)	NA	NA	NA	AT5G02220.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g62584.1	"peptidase aspartic family protein, putative, expressed"	Medtr5g087490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3923.1.S1_at	B	B1S	POPTR_0006s25150	POPTR_0006s25150 (5:411)	scaffold_6:23581790-23582341(-) (9)	NA	Q96543	Oleosin 16 kDa	AT2G25890.1	Oleosin family protein 	LOC_Os04g46200.1	"oleosin, putative, expressed"	Medtr3g133000.1	Oleosin 	NA	NA	GO:0043231|intracellular membrane-bounded organelle||GO:0016021|integral to membrane||GO:0012511|monolayer-surrounded lipid storage body
Ptp.3926.1.S1_at	B	B1S	POPTR_0009s13220	POPTR_0009s13220 (4:408)	NA	NA	Q9LT23	Transcription factor bHLH121	AT3G19860.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g23823.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr4g111220.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.393.1.A1_at	B	B1S	POPTR_0006s28810	POPTR_0006s28810 (1:52)	NA	NA	Q9SV21	Coatomer subunit beta-1	AT4G31480.2	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138720.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
Ptp.3930.1.S1_at	B	B1S	POPTR_0015s04970	POPTR_0015s04970 (0:938)	NA	NA	Q9LE73	Nudix hydrolase 4	AT1G18300.1	nudix hydrolase homolog 4 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr6g080940.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.3933.1.S1_at	B	B1S	POPTR_0002s08700	POPTR_0002s08700 (8:490)	NA	NA	O65238	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370	AT5G35370.1	S-locus lectin protein kinase family protein 	LOC_Os09g28180.1	"D-mannose binding lectin family protein, expressed"	Medtr3g097890.1	Protein kinase; Curculin-like (mannose-binding) lectin; N/apple PAN 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3939.1.S1_at	B	B7S	POPTR_0073s00200	POPTR_0073s00200 (3:529)//POPTR_0019s02700 (2:523)//POPTR_0019s02760 (0:523)//POPTR_0019s01950 (0:523)//POPTR_0019s02720 (0:523)//POPTR_0019s01900 (0:496)//POPTR_0053s00220 (0:492)	NA	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3942.2.S1_at	B	B1S	POPTR_0001s47490	POPTR_0001s47490 (5:610)	NA	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3948.1.S1_at	B	B1S	POPTR_0013s00710	POPTR_0013s00710 (7:637)	NA	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.3949.1.S1_at	B	B1S	POPTR_0001s26100	POPTR_0001s26100 (0:677)	NA	NA	P27057	Protein GAST1	AT1G74670.1	Gibberellin-regulated family protein 	LOC_Os05g31280.1	"GASR5 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr7g107650.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3952.1.S1_at	B	B1S	POPTR_0011s11760	POPTR_0011s11760 (8:507)	NA	NA	Q9LDA7	Probable protein phosphatase 2C 39	AT3G15260.2	Protein phosphatase 2C family protein 	LOC_Os07g32380.1	"protein phosphatase 2C, putative, expressed"	Medtr2g008900.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3954.2.S1_at	B	B1S	POPTR_0019s05940	POPTR_0019s05940 (6:161)	NA	NA	NA	NA	AT1G64980.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os07g23120.1	expressed protein	Medtr5g007200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3961.1.S1_at	B	B1S	POPTR_0013s13340	POPTR_0013s13340 (8:619)	NA	NA	NA	NA	AT4G20970.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01870.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr4g108270.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.3965.1.S1_at	B	B1S	POPTR_0002s20760	POPTR_0002s20760 (8:512)	NA	NA	NA	NA	AT2G47770.1	TSPO(outer membrane tryptophan-rich sensory protein)-related 	NA	NA	Medtr7g130420.1	TspO/MBR-related protein 	NA	NA	GO:0016021|integral to membrane
Ptp.3971.1.S1_at	B	B3S	POPTR_0004s22990	POPTR_0004s22990 (4:409)//POPTR_0601s00200 (3:400)//POPTR_0433s00200 (3:306)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
Ptp.3972.1.S1_at	B	B1S	POPTR_0016s04670	POPTR_0016s04670 (8:393)	scaffold_16:2786201-2786889(+) (10)	NA	Q01417	18 kDa seed maturation protein	AT5G06760.1	Late Embryogenesis Abundant 4-5 	LOC_Os08g23870.1	"late embryogenesis abundant group 1, putative, expressed"	Medtr7g111880.1	Late embryogenesis abundant (LEA) group 1 	GO:0009790|embryonic development	NA	NA
Ptp.3975.1.S1_at	B	B1S	POPTR_0004s21360	POPTR_0004s21360 (1:157)	NA	NA	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT1G08320.3	bZIP transcription factor family protein 	LOC_Os01g64020.1	"transcription factor, putative, expressed"	Medtr4g070060.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3976.1.S1_at	B	B1S	POPTR_0008s01870	POPTR_0008s01870 (6:93)	NA	NA	O54922	Exocyst complex component 7	AT5G03540.1	exocyst subunit exo70 family protein A1 	LOC_Os11g05880.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr1g112310.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
Ptp.3977.1.S1_at	B	B1S	POPTR_0001s21530	POPTR_0001s21530 (7:424)	NA	NA	NA	NA	AT2G01080.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os03g15630.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g007950.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
Ptp.3979.1.S1_at	B	B1S	POPTR_0015s14120	POPTR_0015s14120 (7:522)	NA	NA	Q9C6L5	3-ketoacyl-CoA synthase 5	AT1G25450.1	3-ketoacyl-CoA synthase 5 	LOC_Os03g12030.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr1g130220.1	"Gonadotropin, beta chain; Very-long-chain 3-ketoacyl-CoA synthase; "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
Ptp.398.1.S1_at	B	B1S	POPTR_0014s08800	POPTR_0014s08800 (5:2146)	NA	NA	Q8S8M5	Protein ABIL1	AT2G46225.1	ABI-1-like 1 	LOC_Os01g43420.1	expressed protein	Medtr7g143400.1	"Protein ABIL2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.399.1.A1_at	B	B1S	POPTR_0014s07120	POPTR_0014s07120 (7:654)	NA	NA	Q96287	Shaggy-related protein kinase theta	AT4G00720.1	shaggy-like protein kinase 32 	LOC_Os10g37740.1	"CGMC_GSK.9 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g083630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3997.1.S1_at	B	B1S	POPTR_0019s04760	POPTR_0019s04760 (5:372)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3998.1.S1_at	B	B1S	POPTR_0015s10400	POPTR_0015s10400 (7:406)	NA	NA	P17815	"Malate synthase, glyoxysomal"	AT5G03860.2	malate synthase 	LOC_Os04g40990.1	"malate synthase, glyoxysomal, putative, expressed"	AC233577_29.1	Malate synthase AC233577.5 145991-143239 F EGN_Mt090430 200	NA	GO:0003824|catalytic activity	NA
Ptp.3999.1.S1_x_at	B	B1S	POPTR_0019s13930	POPTR_0019s13930 (8:227)	NA	NA	NA	NA	AT4G10270.1	Wound-responsive family protein 	LOC_Os04g54240.1	"wound induced protein, putative, expressed"	Medtr2g095480.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4000.1.S1_at	B	B1S	POPTR_0005s12410	POPTR_0005s12410 (0:507)	NA	NA	NA	NA	AT4G36600.1	Late embryogenesis abundant (LEA) protein 	NA	NA	Medtr5g020400.1	"late embryogenesis abundant domain-containing protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4005.1.S1_at	B	B1S	POPTR_0013s13950	POPTR_0013s13950 (8:372)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4008.1.S1_at	B	B1S	POPTR_0009s17080	POPTR_0009s17080 (8:415)	NA	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT4G38200.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g106900.1	"Protein of unknown function DUF1981, SEC7 associated "	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
Ptp.4012.1.S1_at	B	B1S	POPTR_0001s35270	POPTR_0001s35270 (5:333)	NA	NA	Q9SS98	Oleosin 5	AT3G01570.1	Oleosin family protein 	LOC_Os03g49190.1	"oleosin, putative, expressed"	Medtr6g005060.1	Oleosin 	NA	NA	GO:0043231|intracellular membrane-bounded organelle||GO:0016021|integral to membrane||GO:0012511|monolayer-surrounded lipid storage body
Ptp.4023.1.S1_at	B	B1S	POPTR_0010s23740	POPTR_0010s23740 (7:2214)	scaffold_10:20229246-20231577(+) (10)	NA	P93354	Histone H2B	AT5G04440.1	Protein of unknown function (DUF1997) 	LOC_Os03g05320.2	expressed protein	Medtr1g068710.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
Ptp.4027.1.S1_at	B	B1S	POPTR_0005s04660	POPTR_0005s04660 (0:153)	NA	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr8g139670.1	Sodium/hydrogen exchanger subfamily 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
Ptp.4029.1.S1_s_at	B	B1S	POPTR_0002s19200	POPTR_0002s19200 (2:318)	NA	NA	Q9ZST4	Nitrogen regulatory protein P-II homolog	AT4G01900.1	GLNB1 homolog 	LOC_Os05g04220.1	"nitrogen regulatory protein P-II, putative, expressed"	Medtr7g133450.1	Nitrogen regulatory protein P-II; 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0030234|enzyme regulator activity	NA
Ptp.403.2.A1_at	B	B1S	POPTR_0002s25260	POPTR_0002s25260 (3:64)	NA	NA	Q9LV66	Uncharacterized protein At5g48480	AT5G48480.1	Lactoylglutathione lyase / glyoxalase I family protein 	NA	NA	Medtr7g045650.1	"early tobacco anther 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4031.1.S1_at	B	B1S	POPTR_0004s01770	POPTR_0004s01770 (0:293)	NA	NA	NA	NA	AT4G21790.1	tobamovirus multiplication 1 	LOC_Os03g36790.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.404.1.S1_at	B	B1S	POPTR_0009s02360	POPTR_0009s02360 (8:2003)	NA	NA	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os05g41070.1	"bZIP transcription factor, putative, expressed"	Medtr5g095290.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.4045.1.S1_at	B	B1S	POPTR_0019s07690	POPTR_0019s07690 (1:561)	NA	NA	Q09117	Bark storage protein B	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
Ptp.4047.1.S1_at	B	B1S	POPTR_0001s05810	POPTR_0001s05810 (6:182)	NA	NA	NA	NA	AT5G13470.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4056.1.S1_at	B	B1S	POPTR_0002s25190	POPTR_0002s25190 (7:532)	NA	NA	Q6P7N4	UPF0361 protein C3orf37 homolog	AT2G26470.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF159 (InterPro:IPR003738); Has 3646 Blast hits to 3636 proteins in 1001 species: Archae - 41; Bacteria - 1922; Metazoa - 142; Fungi - 125; Plants - 44; Viruses - 14; Other Eukaryotes - 1358 (source: NCBI BLink). 	LOC_Os06g27650.1	expressed protein	Medtr7g045970.1	"UPF0361 protein yoqW, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4063.3.A1_at	B	B1S	POPTR_0013s01270	POPTR_0013s01270 (7:186)	NA	NA	Q9P1Y6	PHD and RING finger domain-containing protein 1	AT3G05670.1	RING/U-box protein 	LOC_Os03g19020.3	"PHD-finger family protein, expressed"	Medtr7g138060.1	"Zinc finger, RING-type; Zinc finger, P11-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
Ptp.4068.1.A1_at	B	B1S	POPTR_0008s14130	POPTR_0008s14130 (6:515)	scaffold_8:9320314-9323288(+) (11)	NA	Q54V61	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	AT2G02050.1	"NADH-ubiquinone oxidoreductase B18 subunit, putative "	LOC_Os03g03770.1	expressed protein	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity	GO:0005739|mitochondrion
Ptp.4068.3.S1_at	B	B1S	POPTR_0010s11000	POPTR_0010s11000 (6:261)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4071.2.S1_at	B	B1S	POPTR_0006s18800	POPTR_0006s18800 (4:108)	NA	NA	A1XQR9	Small nuclear ribonucleoprotein E	AT4G30330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os02g03440.1	"LSM domain containing protein, expressed"	Medtr2g127110.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4088.1.S1_at	B	B1S	POPTR_0017s00950	POPTR_0017s00950 (7:510)	NA	NA	Q9FLX7	"Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial"	AT5G52840.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os03g19890.1	"NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed"	NA	NA	GO:0022904|respiratory electron transport chain	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH"""	GO:0005743|mitochondrial inner membrane
Ptp.4090.1.S1_at	B	B1S	POPTR_2114s00200	POPTR_2114s00200 (4:327)	NA	NA	Q339N5	Cellulose synthase-like protein H1	AT2G32540.1	cellulose synthase-like B4 	LOC_Os10g20090.1	"CSLH1 - cellulose synthase-like family H, expressed"	Medtr2g104490.1	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4103.1.S1_at	B	B1S	POPTR_0006s22100	POPTR_0006s22100 (8:1604)	NA	NA	Q80U30	Protein CLEC16A	AT3G28430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155); Has 243 Blast hits to 233 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 	LOC_Os04g23210.1	expressed protein	Medtr2g042960.1	"Protein CLEC16A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4104.1.S1_at	B	B1S	POPTR_0006s10010	POPTR_0006s10010 (5:487)	NA	NA	NA	NA	AT5G01260.2	Carbohydrate-binding-like fold 	LOC_Os05g37450.1	"starch binding domain containing protein, putative, expressed"	Medtr4g012900.1	"Glycoside hydrolase, starch-binding; "	GO:0005975|carbohydrate metabolic process	GO:0003824|catalytic activity	NA
Ptp.4107.1.S1_at	B	B2S	POPTR_0596s00210	POPTR_0596s00210 (8:384)//POPTR_0007s01520 (6:242)	scaffold_7:845265-845623(-) (9)	NA	Q9LJP1	GDSL esterase/lipase 4	AT3G14225.1	GDSL-motif lipase 4 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.4111.2.S1_at	B	B1S	POPTR_0013s01640	POPTR_0013s01640 (7:325)	NA	NA	NA	NA	AT1G56220.3	Dormancy/auxin associated family protein 	LOC_Os03g22270.3	"auxin-repressed protein, putative, expressed"	Medtr1g099940.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4112.1.S1_at	B	B1S	POPTR_0001s15840	POPTR_0001s15840 (8:502)	NA	NA	Q39079	Chaperone protein dnaJ 13	AT2G35720.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g36370.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g012600.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.4119.1.S1_at	B	B1S	POPTR_0014s07150	POPTR_0014s07150 (8:312)	NA	NA	Q93W95	Probable methyltransferase PMT13	AT4G00740.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48140.1	"methyltransferase, putative, expressed"	Medtr7g083760.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.412.1.A1_at	B	B1S	POPTR_0014s10780	POPTR_0014s10780 (8:358)	NA	NA	NA	NA	AT4G01790.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g44230.1	"ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed"	Medtr4g159080.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4120.1.S1_at	B	B1S	POPTR_0007s11820	POPTR_0007s11820 (8:356)	NA	NA	Q96GN5	Cell division cycle-associated 7-like protein	AT2G23530.1	Zinc-finger domain of monoamine-oxidase A repressor R1 	LOC_Os11g36030.1	"protein binding protein, putative, expressed"	Medtr4g128660.1	protein binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4121.2.S1_at	B	B1S	POPTR_0002s25620	POPTR_0002s25620 (6:74)	NA	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4131.1.S1_at	B	B1S	POPTR_0010s15950	POPTR_0010s15950 (5:1102)	NA	NA	Q9XHM5	Gibberellin 2-beta-dioxygenase 2	AT1G47990.1	gibberellin 2-oxidase 4 	LOC_Os05g06670.1	"gibberellin 2-oxidase, putative, expressed"	Medtr1g106260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4134.1.S1_at	B	B1S	POPTR_0005s03010	POPTR_0005s03010 (0:384)	NA	NA	O81635	Kinesin-4	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.4135.1.S1_at	B	B1A	POPTR_0003s14030	POPTR_0003s14030 (8:530)	NA	NA	NA	NA	AT4G23890.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). "	LOC_Os07g09800.1	expressed protein	Medtr8g034390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4140.1.S1_at	B	B1S	POPTR_0016s10380	POPTR_0016s10380 (7:156)	NA	NA	Q8W487	"Uncharacterized protein At2g39795, mitochondrial"	AT5G02050.1	Mitochondrial glycoprotein family protein 	LOC_Os01g05010.1	"mitochondrial glycoprotein, putative, expressed"	Medtr5g088110.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
Ptp.4144.1.S1_at	B	B1S	POPTR_0001s25580	POPTR_0001s25580 (6:452)	NA	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g078230.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4152.1.S1_at	B	B1S	POPTR_0011s08700	POPTR_0011s08700 (6:215)	NA	NA	Q6ATG6	Ribonuclease 3-like protein 2	AT3G20420.1	RNAse THREE-like protein 2 	LOC_Os05g18850.1	"endoribonuclease Dicer, putative, expressed"	Medtr3g142860.1	"Ribonuclease III, bacterial "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
Ptp.4153.1.S1_at	B	B1S	POPTR_0018s06490	POPTR_0018s06490 (4:257)	NA	NA	NA	NA	AT1G11020.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os08g29590.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g119280.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4159.1.S1_at	B	B1S	POPTR_0017s04010	POPTR_0017s04010 (0:177)	NA	NA	NA	NA	AT2G43950.1	chloroplast outer envelope protein 37 	LOC_Os02g39600.1	"outer envelope protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4161.1.S1_at	B	B1S	POPTR_0001s27800	POPTR_0001s27800 (5:358)	NA	NA	B0W2S0	Protein KIAA0664 homolog	AT3G52140.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g48620.2	"tetratricopeptide repeat, putative, expressed"	Medtr3g030760.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4163.1.S1_s_at	B	B1S	POPTR_0009s01070	POPTR_0009s01070 (1:49)	NA	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4165.1.S1_at	B	B1S	POPTR_0006s23390	POPTR_0006s23390 (8:109)	NA	NA	Q9C5K8	Protein TIFY 3B	AT5G20900.1	jasmonate-zim-domain protein 12 	LOC_Os04g55920.2	"zinc-finger protein, putative, expressed"	Medtr2g052350.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4166.1.S1_at	B	B2S	POPTR_1310s00200	POPTR_1310s00200 (8:148)//POPTR_0004s19890 (6:84)	NA	NA	P05478	18.5 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr6g067320.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4173.1.S1_at	B	B1A	POPTR_0012s06950	POPTR_0012s06950 (5:316)	NA	NA	NA	NA	AT1G18680.1	HNH endonuclease domain-containing protein 	LOC_Os10g18890.1	"HNH endonuclease domain-containing protein, putative, expressed"	NA	NA	NA	GO:0004519|endonuclease activity||GO:0003676|nucleic acid binding	NA
Ptp.4174.1.S1_at	B	B1S	POPTR_0001s21880	POPTR_0001s21880 (3:291)	NA	NA	Q0WVV0	"Pentatricopeptide repeat-containing protein At1g10910, chloroplastic"	AT1G10910.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g37870.4	"PPR repeat domain containing protein, putative, expressed"	Medtr2g007110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4177.1.S1_at	B	B1S	POPTR_0005s08640	POPTR_0005s08640 (1:376)	NA	NA	O65012	Cytochrome P450 78A4	AT5G09970.1	"cytochrome P450, family 78, subfamily A, polypeptide 7 "	LOC_Os10g26340.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4178.1.A1_at	B	B1S	POPTR_0006s22120	POPTR_0006s22120 (7:849)	NA	NA	Q8GW29	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7	AT5G06300.1	Putative lysine decarboxylase family protein 	LOC_Os03g01880.1	"possible lysine decarboxylase domain containing protein, expressed"	Medtr1g076860.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4183.1.S1_at	B	B1S	POPTR_0007s08410	POPTR_0007s08410 (8:266)	NA	NA	P25586	Ribosomal RNA assembly protein KRR1	AT5G08420.1	RNA-binding KH domain-containing protein 	LOC_Os10g31520.1	"ribosomal RNA assembly protein mis3, putative, expressed"	Medtr5g094630.2	"KH, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4186.3.A1_at	B	B1S	POPTR_0005s25240	POPTR_0005s25240 (8:234)	NA	NA	Q9SFZ3	Transcription factor bHLH110	AT1G27660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01600.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4192.1.S1_at	B	B1S	POPTR_0006s26330	POPTR_0006s26330 (7:219)	NA	NA	Q93YV6	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform	AT5G25510.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os05g48150.1	"transposon protein, putative, unclassified, expressed"	Medtr3g136170.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4194.1.S1_at	B	B1S	POPTR_0005s14680	POPTR_0005s14680 (7:163)	NA	NA	Q1S9I9	Probable histone H2B.1	AT3G45980.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.4197.1.S1_at	B	B1S	POPTR_0015s07550	POPTR_0015s07550 (0:177)	NA	NA	Q40255	Probable aldehyde dehydrogenase	AT5G62530.1	aldehyde dehydrogenase 12A1 	LOC_Os05g45960.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g112760.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4198.1.S1_at	B	B1S	POPTR_0018s13060	POPTR_0018s13060 (8:642)	NA	NA	NA	NA	AT1G80133.1	unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g120580.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4206.1.S1_at	B	B1S	POPTR_0004s19450	POPTR_0004s19450 (7:773)	NA	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4209.1.S1_at	B	B1S	POPTR_0008s02410	POPTR_0008s02410 (0:1836)	NA	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os07g09560.1	"ankyrin repeat family protein, putative"	Medtr5g028360.1	"ankyrin repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4210.1.S1_at	B	B1S	POPTR_0006s13010	POPTR_0006s13010 (0:297)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4214.1.S1_at	B	B1S	POPTR_0010s01780	POPTR_0010s01780 (8:249)	NA	NA	Q9M907	Pentatricopeptide repeat-containing protein At3g06920	AT3G06920.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g14530.3	"PPR repeat containing protein, expressed"	Medtr5g102690.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4219.1.S1_at	B	B1S	POPTR_0011s04710	POPTR_0011s04710 (5:225)	NA	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4220.1.S1_at	B	B1S	POPTR_0001s09860	POPTR_0001s09860 (7:417)	NA	NA	Q9CAK8	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic"	AT1G63970.1	isoprenoid F 	LOC_Os02g45660.1	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed"	Medtr5g010080.1	MECDP-synthase 	GO:0016114|terpenoid biosynthetic process	"GO:0008685|""2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"""	NA
Ptp.4222.1.S1_at	B	B1S	POPTR_0018s10490	POPTR_0018s10490 (1:204)	NA	NA	P81370	Thaumatin-like protein	AT4G11650.1	osmotin 34 	LOC_Os03g46070.1	"thaumatin, putative, expressed"	Medtr5g010810.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4224.1.S1_at	B	B1S	POPTR_0004s21960	POPTR_0004s21960 (5:359)	NA	NA	Q8GX93	Chloride channel protein CLC-e	AT4G35440.1	chloride channel E 	LOC_Os01g50860.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr5g106870.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
Ptp.4225.1.S1_at	B	B1S	POPTR_0011s16030	POPTR_0011s16030 (4:221)	NA	NA	Q3UKJ7	WD40 repeat-containing protein SMU1	AT1G73720.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g21940.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g068820.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4226.1.S1_at	B	B1S	POPTR_0006s04320	POPTR_0006s04320 (8:333)	NA	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os03g23010.1	expressed protein	Medtr7g107690.1	"ERD15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4228.1.S1_at	B	B1S	POPTR_0008s18430	POPTR_0008s18430 (1:75)	scaffold_12:11614307-11614382(+) (10)	NA	NA	NA	AT4G21300.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4231.1.S1_at	B	B1S	POPTR_0015s01060	POPTR_0015s01060 (0:32)	scaffold_15:619502-619662(+) (9)	NA	NA	NA	NA	NA	LOC_Os06g27370.1	expressed protein	Medtr2g008270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4234.1.S1_at	B	B1S	POPTR_0005s11160	POPTR_0005s11160 (6:387)	NA	NA	Q9ZUB8	F-box protein SKIP22	AT1G23780.1	F-box family protein 	LOC_Os03g12940.3	"OsFBO13 - F-box and other domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4241.1.S1_at	B	B1S	POPTR_0005s07490	POPTR_0005s07490 (8:586)	NA	NA	Q9LFT5	EPIDERMAL PATTERNING FACTOR-like protein 1	AT5G10310.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g51950.1	expressed protein	Medtr3g101900.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.425.1.S1_at	B	B1S	POPTR_0017s04260	POPTR_0017s04260 (3:279)	NA	NA	Q8S0F0	Formin-like protein 1	AT3G25500.1	formin homology 1 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr4g128070.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4251.1.S1_at	B	B1S	POPTR_0016s06890	POPTR_0016s06890 (8:522)	NA	NA	Q640V9	Putative deoxyribonuclease TATDN1	AT3G52390.1	TatD related DNase 	LOC_Os07g06440.1	"deoxyribonuclease tatD, putative, expressed"	NA	NA	NA	"GO:0016888|""endodeoxyribonuclease activity, producing 5'-phosphomonoesters"""	NA
Ptp.4252.1.S1_at	B	B1S	POPTR_0001s24710	POPTR_0001s24710 (6:175)	NA	NA	P48491	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.4261.1.S1_at	B	B1S	POPTR_0007s12390	POPTR_0007s12390 (3:1357)	NA	NA	Q40287	Anthocyanidin 3-O-glucosyltransferase 5	AT2G18570.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g43280.1	"hydroquinone glucosyltransferase, putative, expressed"	Medtr8g088810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4264.1.S1_at	B	B1S	POPTR_0002s08130	POPTR_0002s08130 (0:355)	NA	NA	Q9XI05	Proteasome subunit beta type-3-A	AT1G21720.1	proteasome beta subunit C1 	LOC_Os06g43570.1	"peptidase, T1 family, putative, expressed"	Medtr7g105310.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4266.1.S1_at	B	B1S	POPTR_0002s20940	POPTR_0002s20940 (5:344)	scaffold_2:17159301-17164957(+) (9)	NA	Q8L4H0	Wee1-like protein kinase	AT1G02970.1	WEE1 kinase homolog 	LOC_Os02g04240.1	"wee1-like protein kinase, putative, expressed"	Medtr7g130230.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4268.1.S1_at	B	B1S	POPTR_0001s22710	POPTR_0001s22710 (0:529)	NA	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4274.1.S1_at	B	B1S	POPTR_0003s01630	POPTR_0003s01630 (6:3898)	NA	NA	NA	NA	AT1G15200.1	protein-protein interaction regulator family protein 	LOC_Os03g49520.1	"pinin/SDK/memA protein, putative, expressed"	Medtr2g007930.1	"Pinin/SDK/memA protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4275.1.S1_s_at	B	B2S	POPTR_0011s11630	POPTR_0011s11630 (3:287)//POPTR_0011s11640 (1:283)	NA	NA	NA	NA	AT5G53940.1	Yippee family putative zinc-binding protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4279.1.S1_at	B	B1S	POPTR_0006s22150	POPTR_0006s22150 (6:371)	scaffold_6:21207495-21208045(+) (11)	NA	O35261	Transcription factor E2F3	AT2G36010.1	E2F transcription factor 3 	LOC_Os12g06200.1	"E2F family transcription factor protein, putative, expressed"	AC146557_13.1	Winged helix repressor DNA-binding AC146557.33 75654-81329 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
Ptp.4280.1.S1_at	B	B1S	POPTR_0010s24730	POPTR_0010s24730 (0:6)	NA	NA	Q09143	High affinity cationic amino acid transporter 1	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os11g05690.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0006810|transport	NA	GO:0016020|membrane
Ptp.4285.1.S1_at	B	B1S	POPTR_0017s06180	POPTR_0017s06180 (0:151)	NA	NA	P54967	Biotin synthase	AT2G43360.1	Radical SAM superfamily protein 	LOC_Os08g42730.1	"radical SAM enzyme, putative, expressed"	Medtr4g104400.1	Biotin and thiamin synthesis associated 	GO:0044283|small molecule biosynthetic process||GO:0009102|biotin biosynthetic process||GO:0044281|small molecule metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0004076|biotin synthase activity	NA
Ptp.4288.1.S1_at	B	B1S	POPTR_0007s12710	POPTR_0007s12710 (7:370)	NA	NA	Q9NRZ9	Lymphoid-specific helicase	AT5G66750.1	chromatin remodeling 1 	LOC_Os09g27060.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g019900.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.4292.2.S1_s_at	B	B1S	POPTR_0006s22570	POPTR_0006s22570 (5:364)	scaffold_6:21547071-21550599(+) (9)	NA	Q9AST6	Vacuolar protein sorting-associated protein 55 homolog	AT3G11530.2	Vacuolar protein sorting 55 (VPS55) family protein 	LOC_Os01g73570.2	"vacuolar protein sorting 55 family protein, putative, expressed"	Medtr5g014160.1	Vacuolar protein sorting 55 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4300.1.S1_at	B	B1S	POPTR_0006s25030	POPTR_0006s25030 (0:357)	NA	NA	O82804	Protein EARLY FLOWERING 3	AT2G25930.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g38530.1	"ELF3 protein, putative, expressed"	Medtr3g140450.1	"early flowering 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4303.1.S1_s_at	B	B1S	POPTR_0505s00220	POPTR_0505s00220 (8:519)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4305.1.S1_at	B	B1S	POPTR_0017s13090	POPTR_0017s13090 (0:181)	NA	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os11g41150.1	"nitrilase-associated protein, putative, expressed"	Medtr7g025650.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4309.1.S1_at	B	B1S	POPTR_0003s14860	POPTR_0003s14860 (8:477)	NA	NA	Q9FKE6	Cyclin-T1-5	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4310.1.S1_at	B	B1S	POPTR_0009s02330	POPTR_0009s02330 (8:1177)	NA	NA	Q6ZQ58	La-related protein 1	AT5G21160.1	LA RNA-binding protein 	LOC_Os01g16110.2	"la domain containing protein, putative, expressed"	Medtr5g095250.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.432.1.A1_at	B	B1S	POPTR_0012s07090	POPTR_0012s07090 (8:288)	NA	NA	P53997	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
Ptp.4326.1.S1_at	B	B1S	POPTR_0008s01470	POPTR_0008s01470 (3:496)	NA	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT5G04895.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
Ptp.4328.1.A1_at	B	B1S	POPTR_0004s18270	POPTR_0004s18270 (5:507)	NA	NA	P93768	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G20200.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os09g37000.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
Ptp.4332.1.S1_at	B	B1S	POPTR_0010s16750	POPTR_0010s16750 (3:199)	NA	NA	Q9BRT8	COBW domain-containing protein 1	AT1G26520.1	Cobalamin biosynthesis CobW-like protein 	LOC_Os07g40790.2	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4351.1.S1_at	B	B1A	POPTR_0001s17240	POPTR_0001s17240 (7:231)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4354.1.S1_at	B	B1S	POPTR_0022s00850	POPTR_0022s00850 (1:138)	NA	NA	Q68CQ4	Digestive organ expansion factor homolog	AT1G17690.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). "	LOC_Os05g22920.1	"digestive organ expansion factor, putative, expressed"	Medtr2g013650.1	Protein of unknown function DUF1253 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4355.1.S1_at	B	B1S	POPTR_0014s15000	POPTR_0014s15000 (7:513)	NA	NA	NA	NA	AT3G21710.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g103820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4357.1.S1_at	B	B1S	POPTR_0013s08210	POPTR_0013s08210 (7:769)	NA	NA	O65001	Protein terminal ear1	AT3G26120.1	terminal EAR1-like 1 	LOC_Os01g68000.1	"AML1, putative, expressed"	Medtr4g096760.1	RNA recognition motif 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4359.1.S1_at	B	B1S	POPTR_0004s18060	POPTR_0004s18060 (4:306)	NA	NA	Q6WWW4	E3 ubiquitin-protein ligase UPL3	AT4G38600.1	HEAT repeat ;HECT-domain (ubiquitin-transferase) 	LOC_Os02g01170.1	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
Ptp.436.1.S1_at	B	B1S	POPTR_0008s03950	POPTR_0008s03950 (1:25)	NA	NA	P43286	Aquaporin PIP2-1	AT3G53420.2	plasma membrane intrinsic protein 2A 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.437.1.S1_at	B	B1S	POPTR_0009s13570	POPTR_0009s13570 (1:519)	NA	NA	Q9ZNT3	Actin-depolymerizing factor 5	AT2G16700.1	actin depolymerizing factor 5 	LOC_Os03g13950.1	"actin-depolymerizing factor, putative, expressed"	AC233662_56.1	"Actin-binding, cofilin/tropomyosin type AC233662.1 257418-259371 F EGN_Mt090430 200"	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.4378.1.S1_at	B	B1S	POPTR_0006s03090	POPTR_0006s03090 (0:232)	NA	NA	NA	NA	AT3G56880.1	VQ motif-containing protein 	LOC_Os01g17050.1	"VQ domain containing protein, putative, expressed"	Medtr7g105490.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4383.1.S1_at	B	B1S	POPTR_0007s07730	POPTR_0007s07730 (4:2175)	NA	NA	Q96499	60S ribosomal protein L44	AT4G14320.1	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4388.1.S1_at	B	B1S	POPTR_0001s47520	POPTR_0001s47520 (5:1371)	NA	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os04g57220.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr3g083600.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4398.1.S1_at	B	B1S	POPTR_0008s13360	POPTR_0008s13360 (3:559)	NA	NA	Q9ZU95	"Nudix hydrolase 17, mitochondrial"	AT2G01670.1	nudix hydrolase homolog 17 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g157270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4398.2.A1_at	B	B1S	POPTR_0008s13360	POPTR_0008s13360 (6:429)	NA	NA	Q9ZU95	"Nudix hydrolase 17, mitochondrial"	AT2G01670.1	nudix hydrolase homolog 17 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g157270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4399.1.S1_at	B	B1S	POPTR_0002s20390	POPTR_0002s20390 (0:142)	NA	NA	P34914	Epoxide hydrolase 2	AT4G02340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g19150.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138740.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.44.1.A1_at	B	B1S	POPTR_0006s27760	POPTR_0006s27760 (8:424)	scaffold_6:25630042-25630500(-) (9)	NA	Q39262	Zinc finger protein 3	AT5G10970.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr3g138050.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.440.1.A1_at	B	B1S	POPTR_0008s23220	POPTR_0008s23220 (7:351)	NA	NA	Q9Y4D2	Sn1-specific diacylglycerol lipase alpha	AT4G16070.1	"Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 "	LOC_Os01g20840.1	"lipase class 3 family protein, putative, expressed"	Medtr8g025380.1	"lipase class 3 family protein, related "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.4401.1.S1_at	B	B1S	POPTR_0010s06600	POPTR_0010s06600 (0:427)	NA	NA	Q14181	DNA polymerase alpha subunit B	AT1G67630.1	DNA polymerase alpha 2 	LOC_Os12g13950.1	"POLA2 - Putative DNA polymerase alpha complex subunit, expressed"	Medtr3g103320.1	DNA polymerase epsilon subunit B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
Ptp.4407.1.S1_at	B	B1S	POPTR_0010s18030	POPTR_0010s18030 (4:127)	NA	NA	Q9SA32	Putative cyclin-B3-1	AT1G16330.1	cyclin b3;1 	LOC_Os01g59120.1	"cyclin, putative, expressed"	Medtr7g106110.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.4408.1.S1_at	B	B1S	POPTR_0014s17500	POPTR_0014s17500 (3:364)	scaffold_14:13719617-13722939(-) (10)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G07500.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g15040.2	"FAR1 family protein, expressed"	CU179634_13.1	"FAR1; Zinc finger, PMZ-type CU179634.6 56083-52389 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4416.1.S1_at	B	B1S	POPTR_0009s04500	POPTR_0009s04500 (8:95)	NA	NA	P18025	Tubulin beta-1 chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.4417.1.S1_at	B	B1S	POPTR_0013s01420	POPTR_0013s01420 (3:433)	NA	NA	O80494	F-box protein PP2-B15	AT1G09155.1	phloem protein 2-B15 	LOC_Os02g56760.1	OsFBX66 - F-box domain containing protein	Medtr7g138360.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4418.1.S1_at	B	B1S	POPTR_0008s14610	POPTR_0008s14610 (1:274)	NA	NA	NA	NA	AT1G70200.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g22070.1	expressed protein	Medtr5g036560.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4422.1.S1_at	B	B1S	POPTR_0014s18800	POPTR_0014s18800 (6:444)	NA	NA	P42620	Uncharacterized protein yqjG	AT5G44000.1	Glutathione S-transferase family protein 	LOC_Os02g56970.1	"uncharacterized protein yqjG, putative, expressed"	Medtr4g114540.1	"Intracellular chloride channel; Glutathione S-transferase, C-terminal-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4423.1.S1_at	B	B2S	POPTR_0013s08230	POPTR_0017s05020 (0:261)//POPTR_0013s08230 (0:254)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4424.1.S1_at	B	B1S	POPTR_0005s27250	POPTR_0005s27250 (8:421)	NA	NA	P62323	Small nuclear ribonucleoprotein Sm D3	AT1G20580.1	Small nuclear ribonucleoprotein family protein 	LOC_Os03g13760.1	"LSM domain containing protein, expressed"	Medtr4g141250.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4426.1.S1_at	B	B1S	POPTR_0002s08100	POPTR_0002s08100 (7:494)	NA	NA	Q9SAH8	Metal transporter Nramp1	AT1G80830.1	natural resistance-associated macrophage protein 1 	LOC_Os07g15370.1	"metal transporter Nramp6, putative, expressed"	Medtr3g100650.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4429.1.S1_at	B	B1S	POPTR_0003s10870	POPTR_0003s10870 (6:90)	NA	NA	Q58CV5	Sugar phosphate exchanger 2	AT3G47420.1	phosphate starvation-induced gene 3 	LOC_Os04g46880.2	"transporter, major facilitator family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4434.1.S1_at	B	B1S	POPTR_0006s03500	POPTR_0006s03500 (2:344)	NA	NA	NA	NA	AT1G19485.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g63910.1	"AT hook motif family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4447.1.S1_at	B	B1S	POPTR_0019s10790	POPTR_0019s10790 (7:1565)	scaffold_19:12283503-12285258(-) (11)	NA	NA	NA	AT1G22520.1	Domain of unknown function (DUF543) 	LOC_Os03g62420.1	expressed protein	Medtr3g012620.1	Protein of unknown function DUF543 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4464.1.S1_at	B	B1S	POPTR_0001s11140	POPTR_0001s11140 (4:299)	NA	NA	O42901	Uncharacterized protein C119.09c	AT5G42000.1	ORMDL family protein 	LOC_Os07g26940.1	"ORM1, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
Ptp.447.1.A1_at	B	B1S	POPTR_0002s08790	POPTR_0002s08790 (0:1004)	NA	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G38131.1	O-fucosyltransferase family protein 	LOC_Os12g07540.1	"growth regulator related protein, putative, expressed"	Medtr5g065110.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4474.1.S1_at	B	B2S	POPTR_0015s05840	POPTR_0015s05850 (0:1016)//POPTR_0015s05840 (0:861)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4476.3.S1_at	B	B1S	POPTR_0012s11500	POPTR_0012s11500 (5:178)	NA	NA	Q38946	Glutamate dehydrogenase 2	AT5G07440.2	glutamate dehydrogenase 2 	LOC_Os04g45970.1	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.448.1.A1_at	B	B2S	POPTR_0005s23680	POPTR_0005s23680 (7:2291)//POPTR_0002s04860 (6:2234)	NA	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4480.1.S1_at	B	B1S	POPTR_0002s13280	POPTR_0002s13280 (7:1072)	NA	NA	Q9SX85	Exocyst complex component SEC3A	AT1G47550.1	exocyst complex component sec3A 	LOC_Os03g42750.1	"roothairless 1, putative, expressed"	Medtr1g025760.1	"Strong similarity to F16N3.18 from, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.449.1.A1_at	B	B1S	POPTR_0006s05060	POPTR_0006s05060 (3:474)	NA	NA	Q5SPP5	Protein EFR3 homolog B	AT2G41830.1	Uncharacterized protein 	LOC_Os02g05040.1	"cyclin-related protein, putative, expressed"	Medtr2g118260.1	"cyclin-related protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4493.2.A1_at	B	B1S	POPTR_0009s09930	POPTR_0009s09930 (8:124)	NA	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os04g20810.3	"receptor protein kinase, putative, expressed"	Medtr4g032150.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4504.1.S1_at	B	B1S	POPTR_0018s01130	POPTR_0018s01130 (8:253)	scaffold_18:1030270-1030776(+) (11)	NA	Q93YV6	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform	AT5G25510.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os05g48150.1	"transposon protein, putative, unclassified, expressed"	Medtr3g136170.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4507.1.A1_at	B	B1S	POPTR_0010s25960	POPTR_0010s25960 (2:729)	NA	NA	NA	NA	AT2G03070.1	mediator subunit 8 	LOC_Os03g31010.1	expressed protein	Medtr5g014110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4514.1.S1_at	B	B1S	POPTR_0006s14580	POPTR_0006s14580 (0:120)	NA	NA	NA	NA	AT2G28230.1	TATA-binding related factor (TRF) of subunit 20 of Mediator complex 	LOC_Os09g27140.2	expressed protein	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.452.1.A1_at	B	B1S	POPTR_0002s06240	POPTR_0002s06240 (7:472)	NA	NA	Q6YYB0	Uncharacterized protein Os08g0359500	AT4G02450.2	HSP20-like chaperones superfamily protein 	LOC_Os03g26460.1	"CS domain containing protein, putative, expressed"	Medtr6g033380.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4525.1.S1_at	B	B1S	POPTR_0002s15050	POPTR_0002s15050 (0:184)	NA	NA	Q9FVC8	"Dihydrodipicolinate synthase 2, chloroplastic"	AT2G45440.1	dihydrodipicolinate synthase 	LOC_Os04g18200.1	"dihydrodipicolinate synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016829|lyase activity	NA
Ptp.4529.1.S1_s_at	B	B1S	POPTR_0013s05720	POPTR_0013s05720 (7:410)	scaffold_13:4112507-4113098(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4535.1.S1_at	B	B1S	POPTR_0001s28230	POPTR_0001s28230 (8:452)	NA	NA	P95245	Phospholipase C 3	AT2G26870.1	non-specific phospholipase C2 	LOC_Os01g72520.1	"phosphoesterase family protein, putative, expressed"	Medtr3g150680.1	Phosphoesterase 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.4538.1.A1_at	B	B1S	POPTR_0009s05930	POPTR_0009s05930 (0:663)	NA	NA	Q8LG50	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	AT3G57650.1	lysophosphatidyl acyltransferase 2 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.4541.1.S1_at	B	B2S	POPTR_0006s18670	POPTR_0006s18670 (0:1246)//POPTR_0006s18690 (0:1245)	NA	NA	A6XNC6	Flavonoid 3-O-glucosyltransferase	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128440.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008152|metabolic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.4542.1.S1_at	B	B1S	POPTR_0014s08850	POPTR_0014s08850 (6:435)	NA	NA	P29061	Basic endochitinase	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	AC146568_9.1	"Glycoside hydrolase, chitinase active site AC146568.11 45116-44051 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4547.1.S1_at	B	B1S	POPTR_0009s15340	POPTR_0009s15340 (1:408)	NA	NA	Q058N4	"Magnesium transporter MRS2-11, chloroplastic"	AT5G22830.1	magnesium (Mg) transporter 10 	LOC_Os03g48000.1	"CorA-like magnesium transporter protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4549.1.S1_at	B	B1S	POPTR_0012s01360	POPTR_0012s01360 (3:381)	NA	NA	NA	NA	AT5G41761.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g33200.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4551.1.S1_at	B	B1S	POPTR_0010s00670	POPTR_0010s00670 (6:377)	NA	NA	P93045	Chromatin structure-remodeling complex protein BSH	AT3G17590.1	"transcription regulatory protein SNF5, putative (BSH) "	LOC_Os02g49190.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed"	Medtr8g133630.1	SNF5/SMARCB1/INI1 	GO:0006338|chromatin remodeling	NA	GO:0000228|nuclear chromosome
Ptp.4558.1.S1_at	B	B1S	POPTR_0006s06220	POPTR_0006s06220 (8:1397)	NA	NA	Q9JM76	Actin-related protein 2/3 complex subunit 3	AT1G60430.2	actin-related protein C3 	LOC_Os02g14000.2	"actin-related protein 2/3 complex subunit 3, putative, expressed"	Medtr8g121950.1	"ARP2/3 complex, 21 kDa p21-Arc subunit "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
Ptp.457.1.A1_at	B	B1S	POPTR_0010s18780	POPTR_0010s18780 (5:2202)	NA	NA	Q6DCG9	Probable UDP-sugar transporter protein SLC35A5	AT3G59360.2	UDP-galactose transporter 6 	LOC_Os04g41320.1	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr1g146890.1	Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
Ptp.457.2.S1_at	B	B1S	POPTR_0010s18780	POPTR_0010s18780 (7:310)	NA	NA	Q6DCG9	Probable UDP-sugar transporter protein SLC35A5	AT3G59360.2	UDP-galactose transporter 6 	LOC_Os04g41320.1	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr1g146890.1	Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
Ptp.4570.1.A1_at	B	B1S	POPTR_0006s25820	POPTR_0006s25820 (8:853)	NA	NA	P37833	"Aspartate aminotransferase, cytoplasmic"	AT5G11520.1	aspartate aminotransferase 3 	LOC_Os01g55540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.4574.1.S1_at	B	B1S	POPTR_0016s07430	POPTR_0016s07430 (5:260)	scaffold_16:5277442-5277919(-) (9)	NA	NA	NA	AT5G06270.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g33860.1	expressed protein	AC146630_13.1	hypothetical protein AC146630.25 80011-79050 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4579.1.S1_at	B	B1S	POPTR_0019s08120	POPTR_0019s08120 (6:361)	NA	NA	Q55158	Riboflavin biosynthesis protein ribD	AT3G47390.2	cytidine/deoxycytidylate deaminase family protein 	LOC_Os02g27340.1	"riboflavin biosynthesis protein ribD, putative, expressed"	Medtr7g089780.1	"CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal; Conserved hypothetical protein CHP02464 "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008703|5-amino-6-(5-phosphoribosylamino)uracil reductase activity||GO:0008270|zinc ion binding||GO:0016787|hydrolase activity	NA
Ptp.458.1.A1_at	B	B1S	POPTR_0010s21950	POPTR_0010s21950 (1:494)	NA	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G12360.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4582.1.S1_at	B	B1S	POPTR_0010s19630	POPTR_0010s19630 (6:251)	scaffold_10:17506517-17506811(+) (10)	NA	Q8LDP4	Peptidyl-prolyl cis-trans isomerase CYP19-4	AT3G55920.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os06g49480.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr3g093650.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.4586.1.S1_at	B	B1S	POPTR_0001s38710	POPTR_0001s38710 (7:743)	scaffold_1:37884209-37887778(-) (10)	NA	Q9M9F9	Interactor of constitutive active ROPs 4	AT1G78430.1	ROP interactive partner 2 	LOC_Os01g55280.1	expressed protein	Medtr8g008490.1	"Uncharacterized protein At1g78430, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.46.1.S1_at	B	B1S	POPTR_0009s01920	POPTR_0009s01920 (8:341)	NA	NA	Q9FF55	Protein disulfide isomerase-like 1-4	AT5G60640.1	PDI-like 1-4 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.4602.1.S1_at	B	B1S	POPTR_0011s11190	POPTR_0011s11190 (2:884)	NA	NA	Q02909	"Phosphoenolpyruvate carboxylase, housekeeping isozyme"	AT3G14940.1	phosphoenolpyruvate carboxylase 3 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
Ptp.4605.2.S1_at	B	B1S	POPTR_0012s13100	POPTR_0012s13100 (8:164)	NA	NA	P29144	Tripeptidyl-peptidase 2	AT4G20850.1	tripeptidyl peptidase ii 	LOC_Os02g44520.1	"OsSub19 - Putative Subtilisin homologue, expressed"	Medtr1g127030.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.4608.3.S1_at	B	B1S	POPTR_0010s22080	POPTR_0010s22080 (0:119)	NA	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.4613.1.S1_at	B	B1S	POPTR_0005s11300	POPTR_0005s11300 (8:635)	NA	NA	B8GPV3	3-dehydroquinate synthase	AT5G66120.2	"3-dehydroquinate synthase, putative "	LOC_Os09g36800.1	"3-dehydroquinate synthase, putative, expressed"	Medtr5g022480.1	3-dehydroquinate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003856|3-dehydroquinate synthase activity	NA
Ptp.4617.1.S1_at	B	B1S	POPTR_0008s02740	POPTR_0008s02740 (6:261)	NA	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.4618.1.S1_at	B	B1A	POPTR_0009s16690	POPTR_0009s16690 (8:389)	NA	NA	Q9SL48	SEC1 family transport protein SLY1	AT2G17980.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os03g42320.1	"Sec1 family transport protein, putative, expressed"	AC233560_16.1	Sec1-like protein AC233560.2 38842-41210 E EGN_Mt090430 200	GO:0006904|vesicle docking during exocytosis	NA	NA
Ptp.4621.3.S1_at	B	B1S	POPTR_0005s22130	POPTR_0005s22130 (0:244)	NA	NA	Q9M9G7	Probable F-actin-capping protein subunit beta	AT1G71790.1	Subunits of heterodimeric actin filament capping protein Capz superfamily 	LOC_Os03g26450.1	"F-actin-capping protein subunit beta, putative, expressed"	NA	NA	GO:0030036|actin cytoskeleton organization	GO:0003779|actin binding	GO:0005737|cytoplasm||GO:0008290|F-actin capping protein complex
Ptp.4625.1.S1_at	B	B1S	POPTR_0010s10020	POPTR_0010s10020 (4:451)	NA	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.4631.2.S1_at	B	B1S	POPTR_0005s23610	POPTR_0005s23610 (5:109)	NA	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4634.1.S1_s_at	B	B1S	POPTR_0016s10780	POPTR_0016s10780 (8:139)	NA	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4642.1.S1_at	B	B1S	POPTR_0011s15960	POPTR_0011s15960 (8:486)	NA	NA	Q9SA77	UDP-arabinose 4-epimerase 1	AT1G30620.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g04690.2	"UDP-arabinose 4-epimerase 1, putative, expressed"	Medtr4g137730.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4644.1.S1_at	B	B1S	POPTR_0008s10630	POPTR_0008s10630 (5:413)	NA	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g106820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.465.1.S1_at	B	B1S	POPTR_0002s03250	POPTR_0002s03250 (5:697)	NA	NA	P25519	GTP-binding protein hflX	AT5G57960.1	"GTP-binding protein, HflX "	LOC_Os11g38020.1	"GTPase of unknown function domain containing protein, putative, expressed"	AC235668_12.1	Small GTP-binding protein domain AC235668.1 41853-35303 E EGN_Mt090430 200	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4658.1.S1_s_at	B	B1S	POPTR_0017s08580	POPTR_0017s08580 (8:458)	scaffold_17:7183381-7183890(-) (11)	NA	Q9LIS3	UDP-glucuronate 4-epimerase 6	AT3G23820.1	UDP-D-glucuronate 4-epimerase 6 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr3g105090.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4662.1.S1_at	B	B1S	POPTR_0014s15450	POPTR_0014s15450 (0:325)	NA	NA	Q55BK0	Ubiquitin fusion degradation protein 1 homolog	AT4G15420.1	Ubiquitin fusion degradation UFD1 family protein 	LOC_Os01g35040.1	"ZOS1-09 - C2H2 zinc finger protein, expressed"	Medtr5g093620.1	"Ubiquitin fusion degradation protein UFD1; Zinc finger, C2H2-type; Peptidase, archaeal and bacterial C-terminal "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.4669.1.S1_at	B	B1S	POPTR_0006s12390	POPTR_0006s12390 (7:544)	NA	NA	Q9SCP2	Probable pectate lyase 12	AT3G53190.1	Pectin lyase-like superfamily protein 	LOC_Os10g31910.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4671.1.S1_at	B	B2S	POPTR_0006s16280	POPTR_0110s00200 (0:196)//POPTR_0006s16280 (3:136)	NA	NA	P0C026	"Nudix hydrolase 24, chloroplastic"	AT5G19470.2	nudix hydrolase homolog 24 	LOC_Os09g15340.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4673.1.S1_at	B	B2S	POPTR_0002s14880	POPTR_0002s14880 (0:353)//POPTR_0192s00210 (0:353)	NA	NA	P51102	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081220.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4679.1.A1_at	B	B1S	POPTR_0017s14470	POPTR_0017s14470 (0:79)	NA	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
Ptp.4683.1.S1_x_at	B	B1S	POPTR_0006s24950	POPTR_0006s24950 (4:229)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4686.1.S1_at	B	B1S	POPTR_0005s23040	POPTR_0005s23040 (5:661)	NA	NA	NA	NA	AT4G02830.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os01g63050.1	expressed protein	Medtr1g086470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4695.1.S1_at	B	B1S	POPTR_0004s17530	POPTR_0004s17530 (0:14)	NA	NA	Q9M4S8	"Triosephosphate isomerase, chloroplastic"	AT2G21170.1	triosephosphate isomerase 	LOC_Os09g36450.1	"triosephosphate isomerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.4696.1.S1_s_at	B	B1S	POPTR_0001s26820	POPTR_0001s26820 (2:233)	scaffold_1:25815839-25816469(-) (11)	NA	Q5R4F4	Protein transport protein Sec31A	AT3G63460.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g46370.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.470.1.S1_s_at	B	B1S	POPTR_0008s22460	POPTR_0008s22460 (3:267)	scaffold_8:16979415-16982735(+) (10)	NA	Q22799	"Dynein light chain 1, cytoplasmic"	AT4G15930.1	Dynein light chain type 1 family protein 	LOC_Os01g15260.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr8g138520.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
Ptp.4701.1.S1_at	B	B1S	POPTR_0006s14950	POPTR_0006s14950 (0:119)	NA	NA	Q9LTR9	Glycylpeptide N-tetradecanoyltransferase 1	AT5G57020.1	myristoyl-CoA:protein N-myristoyltransferase 	LOC_Os01g51170.1	"glycylpeptide N-tetradecanoyltransferase 1, putative, expressed"	Medtr2g046620.1	Myristoyl-CoA:protein N-myristoyltransferase 	GO:0006499|N-terminal protein myristoylation	GO:0004379|glycylpeptide N-tetradecanoyltransferase activity	NA
Ptp.4704.1.S1_at	B	B1S	POPTR_0001s46000	POPTR_0001s46000 (2:770)	NA	NA	O65351	Subtilisin-like protease	AT4G10550.1	Subtilase family protein 	LOC_Os06g41880.1	"OsSub51 - Putative Subtilisin homologue, expressed"	Medtr8g086940.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.4708.1.S1_at	B	B1S	POPTR_0014s01060	POPTR_0014s01060 (3:79)	NA	NA	Q8RJP2	Rhamnogalacturonate lyase	AT2G22620.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127450.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4709.1.S1_at	B	B2S	POPTR_0002s22450	POPTR_0002s22450 (4:83)//POPTR_0431s00200 (4:83)	NA	NA	Q3ECP6	GDSL esterase/lipase At1g54790	AT1G54790.3	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os05g33270.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g139630.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.4713.1.S1_at	B	B1S	POPTR_0001s22290	POPTR_0001s22290 (8:471)	NA	NA	NA	NA	AT5G22070.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g44580.3	"DNA binding protein, putative, expressed"	Medtr2g104790.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.4719.1.S1_s_at	B	B1S	POPTR_0006s25460	POPTR_0006s25460 (0:111)	NA	NA	NA	NA	AT2G25800.1	Protein of unknown function (DUF810) 	LOC_Os09g17760.1	expressed protein	Medtr3g130600.1	Munc13 homology 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4724.2.A1_at	B	B1S	POPTR_0006s14750	POPTR_0006s14750 (0:332)	NA	NA	P54069	Protein bem46	AT5G20520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41730.2	"OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4726.1.S1_at	B	B1S	POPTR_0017s08450	POPTR_0017s08450 (7:935)	NA	NA	Q9ZTS1	Probable methionyl-tRNA synthetase	AT4G13780.1	"methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative "	LOC_Os06g31210.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding||GO:0000049|tRNA binding	GO:0005737|cytoplasm
Ptp.473.1.A1_at	B	B1S	POPTR_0002s02610	POPTR_0002s02610 (1:422)	NA	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT1G75590.1	SAUR-like auxin-responsive protein family  	LOC_Os04g56680.1	"OsSAUR22 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g097600.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4741.1.A1_at	B	B1S	POPTR_0001s27790	POPTR_0001s27790 (8:1080)	NA	NA	NA	NA	AT5G48020.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g48630.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4748.1.S1_at	B	B1S	POPTR_0013s12500	POPTR_0013s12500 (8:62)	scaffold_13:13159228-13162367(+) (11)	NA	NA	NA	AT3G54680.1	proteophosphoglycan-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4749.1.S1_at	B	B1S	POPTR_0019s03530	POPTR_0019s03530 (7:1140)	NA	NA	O07051	L-allo-threonine aldolase	AT1G08630.4	threonine aldolase 1 	LOC_Os04g43650.2	"L-allo-threonine aldolase, putative, expressed"	Medtr1g093690.1	"Aromatic amino acid beta-eliminating lyase/threonine aldolase; Polynucleotidyl transferase, Ribonuclease H fold; ; "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity	NA
Ptp.4764.1.S1_at	B	B1S	POPTR_0005s08220	POPTR_0005s08220 (6:4528)	scaffold_5:5660461-5665106(+) (9)	NA	Q5HZH2	UPF0293 protein C16orf42 homolog	AT5G10070.1	RNase L inhibitor protein-related 	LOC_Os03g09920.1	"RNase L inhibitor protein-related, putative, expressed"	Medtr4g140540.1	"Possible metal-binding region in RNase L inhibitor, RLI "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.477.1.A1_at	B	B1S	POPTR_0006s08570	POPTR_0006s08570 (8:340)	NA	NA	Q9S7G7	Myb-related protein 3R-1	AT5G02320.2	myb domain protein 3r-5 	LOC_Os01g62410.1	"MYB family transcription factor, putative, expressed"	Medtr7g068380.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.478.1.A1_at	B	B1S	POPTR_0895s00200	POPTR_0895s00200 (4:244)	NA	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4785.1.S1_s_at	B	B1S	POPTR_0012s09850	POPTR_0012s09850 (8:1021)	NA	NA	Q66I61	UPF0428 protein CXorf56 homolog	AT5G63440.2	Protein of unknown function (DUF167) 	LOC_Os07g19470.1	"uncharacterized ACR, YggU family COG1872 containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4786.1.S1_at	B	B1S	POPTR_0008s22410	POPTR_0008s22410 (8:1906)	NA	NA	Q39659	Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a	AT3G06860.1	multifunctional protein 2 	LOC_Os01g24680.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr8g138540.1	3-hydroxyacyl-CoA dehydrogenase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4795.1.S1_at	B	B1S	POPTR_0002s13070	POPTR_0002s13070 (4:715)	NA	NA	Q9SZA7	Probable disease resistance protein At4g33300	AT4G33300.2	ADR1-like 1 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr1g025080.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.4797.1.S1_at	B	B2S	POPTR_0005s21870	POPTR_0005s21870 (5:211)//POPTR_0002s06490 (2:65)	NA	NA	Q9SQI2	Protein GIGANTEA	AT1G22770.1	gigantea protein (GI) 	LOC_Os01g08700.6	"GIGANTEA, putative, expressed"	Medtr1g124650.2	"Protein GIGANTEA, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4806.2.S1_at	B	B1S	POPTR_0008s16350	POPTR_0008s16350 (8:357)	NA	NA	NA	NA	AT5G52070.1	Agenet domain-containing protein 	LOC_Os05g04860.1	"agenet domain containing protein, putative, expressed"	Medtr4g032970.1	Agenet 	NA	GO:0003723|RNA binding	NA
Ptp.4808.1.S1_at	B	B1S	POPTR_0001s06700	POPTR_0001s06700 (6:1683)	NA	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr8g043600.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.4811.2.A1_at	B	B1S	POPTR_0001s15170	POPTR_0001s15170 (5:279)	NA	NA	Q8W4H1	GATA transcription factor 26	AT4G17570.3	GATA transcription factor 26 	LOC_Os04g46020.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g013520.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.4816.2.S1_at	B	B1S	POPTR_0004s05050	POPTR_0004s05050 (4:218)	NA	NA	Q13442	28 kDa heat- and acid-stable phosphoprotein	AT5G46020.1	"CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g54920.1	"heat- and acid-stable phosphoprotein, putative, expressed"	Medtr2g018420.1	"28 kDa heat- and acid-stable phosphoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4830.1.S1_at	B	B1S	POPTR_0019s14180	POPTR_0019s14180 (8:480)	NA	NA	Q4R6X9	Leucine-rich repeat-containing protein 48	AT4G03260.2	Outer arm dynein light chain 1 protein 	LOC_Os07g01550.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.4840.1.S1_at	B	B1S	POPTR_0001s36190	POPTR_0001s36190 (8:194)	NA	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g016860.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.4841.1.S1_at	B	B1S	POPTR_0018s00690	POPTR_0018s00690 (4:377)	NA	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4841.1.S1_s_at	B	B1S	POPTR_0018s00690	POPTR_0018s00690 (7:697)	NA	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4842.2.A1_at	B	B1S	POPTR_0005s22470	POPTR_0005s22470 (8:524)	NA	NA	NA	NA	AT1G06510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). 	LOC_Os01g50120.2	expressed protein	Medtr5g098730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.485.2.S1_at	B	B1S	POPTR_0008s14960	POPTR_0008s14960 (0:2411)	NA	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT3G05990.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g08610.1	"leucine-rich repeat family protein, putative, expressed"	Medtr1g132820.1	"Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, related "	NA	GO:0005515|protein binding	NA
Ptp.4851.1.S1_at	B	B1S	POPTR_0009s07050	POPTR_0009s07050 (7:195)	NA	NA	Q39023	Mitogen-activated protein kinase 3	AT3G45640.1	mitogen-activated protein kinase 3 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g080100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4854.1.S1_at	B	B1S	POPTR_0006s25980	POPTR_0006s25980 (8:351)	NA	NA	O81004	GTP-binding protein At2g22870	AT5G11480.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g53150.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr3g132650.1	Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4855.1.S1_at	B	B1S	POPTR_0002s07690	POPTR_0002s07690 (8:273)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.486.1.A1_at	B	B1S	POPTR_0014s01380	POPTR_0014s01380 (4:286)	NA	NA	Q6RT24	Centromere-associated protein E	AT1G59540.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g35090.1	"kinesin motor domain containing protein, putative, expressed"	Medtr4g096670.1	"Kinesin, motor region; Zinc finger, RING-type "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.4868.1.S1_s_at	B	B1S	POPTR_0016s10510	POPTR_0016s10510 (4:243)	NA	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G55550.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os12g38610.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4870.1.S1_at	B	B1S	POPTR_0001s04770	POPTR_0001s04770 (4:75)	NA	NA	Q9M2P4	E3 ubiquitin-protein ligase SINAT2	AT3G58040.1	seven in absentia of Arabidopsis 2 	LOC_Os02g03620.1	"seven in absentia protein family domain containing protein, expressed"	Medtr7g112270.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
Ptp.4872.1.A1_at	B	B1S	POPTR_0006s22480	POPTR_0006s22480 (7:158)	NA	NA	NA	NA	AT3G11560.4	LETM1-like protein 	LOC_Os08g37610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4879.1.S1_at	B	B1S	POPTR_0015s14790	POPTR_0015s14790 (7:797)	NA	NA	P80065	"Beta-fructofuranosidase, soluble isoenzyme I"	AT1G62660.1	Glycosyl hydrolases family 32 protein 	LOC_Os04g45290.1	"glycosyl hydrolases, putative, expressed"	Medtr8g106250.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4882.2.S1_at	B	B4S	POPTR_0010s06930	POPTR_0010s06930 (6:311)//POPTR_0010s06970 (5:310)//POPTR_0010s06940 (2:302)//POPTR_0010s06990 (0:45)	NA	NA	O80763	Probable nucleoredoxin 1	AT1G60420.1	DC1 domain-containing protein 	LOC_Os03g29190.2	"PDI, putative, expressed"	Medtr3g133070.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin domain 2; C1-like; Thioredoxin fold "	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.4888.1.S1_at	B	B1S	POPTR_0009s08350	POPTR_0009s08350 (6:152)	NA	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT5G10550.1	global transcription factor group E2 	LOC_Os04g53170.1	"bromodomain containing protein, expressed"	Medtr4g121780.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4888.2.S1_at	B	B1S	POPTR_0009s08350	POPTR_0009s08350 (1:2380)	scaffold_9:7669654-7672517(-) (9)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT5G10550.1	global transcription factor group E2 	LOC_Os04g53170.1	"bromodomain containing protein, expressed"	Medtr4g121780.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.489.1.A1_at	B	B1S	POPTR_0013s09440	POPTR_0013s09440 (0:289)	NA	NA	Q55GS2	Probable inactive serine/threonine-protein kinase scy1	AT2G40730.1	Protein kinase family protein with ARM repeat domain 	LOC_Os01g60440.1	"HEAT repeat family protein, putative, expressed"	AC235754_13.1	Armadillo-like helical AC235754.1 40000-47052 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4891.1.A1_at	B	B1S	POPTR_0002s15240	POPTR_0002s15240 (7:480)	NA	NA	B6YWH0	Glyoxylate reductase	AT2G45630.2	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01650.1	erythronate-4-phosphate dehydrogenase domain containing protein	Medtr4g009370.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.4898.1.S1_at	B	B1S	POPTR_0003s08360	POPTR_0003s08360 (8:263)	NA	NA	O23553	"Beta-amylase 3, chloroplastic"	AT4G17090.1	chloroplast beta-amylase 	LOC_Os10g41550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.4898.2.S1_at	B	B1S	POPTR_0003s08360	POPTR_0003s08360 (1:459)	NA	NA	O23553	"Beta-amylase 3, chloroplastic"	AT4G17090.1	chloroplast beta-amylase 	LOC_Os10g41550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.4899.1.S1_at	B	B1S	POPTR_0002s26160	POPTR_0002s26160 (1:514)	NA	NA	NA	NA	AT1G75250.2	RAD-like 6 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr8g093090.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4903.1.S1_at	B	B1S	POPTR_0006s29040	POPTR_0006s29040 (7:226)	NA	NA	Q9Y450	HBS1-like protein	AT5G10630.2	Translation elongation factor EF1A/initiation factor IF2gamma family protein 	LOC_Os01g02720.2	"elongation factor Tu, putative, expressed"	Medtr4g136490.2	"Zinc finger, RanBP2-type; Translation factor; EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal "	NA	GO:0008270|zinc ion binding||GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0005622|intracellular
Ptp.4906.1.S1_at	B	B1S	POPTR_0008s19650	POPTR_0008s19650 (5:649)	NA	NA	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
Ptp.4909.2.S1_at	B	B1S	POPTR_0009s12620	POPTR_0009s12620 (4:309)	NA	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os01g54210.1	"GATA zinc finger domain containing protein, expressed"	Medtr4g097100.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.4910.1.S1_at	B	B1S	POPTR_0001s24570	POPTR_0001s24570 (8:243)	NA	NA	Q94B55	Putative E3 ubiquitin-protein ligase XBAT31	AT2G28840.1	XB3 ortholog 1 in Arabidopsis thaliana 	LOC_Os05g02130.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	AC146807_5.2	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4912.1.S1_at	B	B1S	POPTR_0001s11100	POPTR_0001s11100 (5:669)	NA	NA	O22264	Transcription factor MYB12	AT5G49330.1	myb domain protein 111 	LOC_Os05g35500.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4915.1.S1_at	B	B1S	POPTR_0006s11410	POPTR_0006s11410 (0:330)	NA	NA	Q9ZVI6	Protein LURP-one-related 8	AT2G38640.1	Protein of unknown function (DUF567) 	LOC_Os11g02750.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126520.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4916.1.S1_s_at	B	B1S	POPTR_0005s00710	POPTR_0005s00710 (8:111)	NA	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.493.1.S1_at	B	B1S	POPTR_0009s17000	POPTR_0009s17000 (7:1576)	NA	NA	Q949P3	Uncharacterized protein At2g17340	AT4G35360.1	Uncharacterised conserved protein (UCP030210) 	LOC_Os06g21980.1	"pantothenate kinase 4, putative, expressed"	Medtr7g034760.1	Protein of unknown function DUF89 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4932.1.S1_at	B	B1S	POPTR_0014s07290	POPTR_0014s07290 (6:3056)	NA	NA	Q9SN28	RING-H2 finger protein ATL7	AT4G10150.1	RING/U-box superfamily protein 	LOC_Os02g45390.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4937.1.S1_at	B	B1S	POPTR_0005s10520	POPTR_0005s10520 (1:378)	NA	NA	Q9HGL2	Uncharacterized calcium-binding protein C800.10c	AT1G21630.1	Calcium-binding EF hand family protein 	LOC_Os06g51250.1	"EF hand family protein, putative, expressed"	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4954.1.S1_at	B	B1S	POPTR_0014s06190	POPTR_0014s06190 (5:430)	NA	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os10g40740.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.4958.1.S1_at	B	B1S	POPTR_0011s12430	POPTR_0011s12430 (7:486)	NA	NA	NA	NA	AT3G15518.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.496.1.A1_at	B	B5S	POPTR_0011s01300	POPTR_0011s01810 (2:416)//POPTR_0011s01755 (1:412)//POPTR_0011s01300 (2:396)//POPTR_0011s01340 (1:385)//POPTR_0266s00010 (2:181)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.4963.1.S1_x_at	B	B1S	POPTR_0005s19400	POPTR_0005s19400 (5:184)	scaffold_5:18215575-18215900(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4968.1.S1_s_at	B	B1S	POPTR_0008s19850	POPTR_0008s19850 (4:552)	NA	NA	NA	NA	AT1G27100.1	Actin cross-linking protein 	LOC_Os07g09384.1	expressed protein	Medtr5g038610.1	Cytosolic fatty-acid binding; Actin-crosslinking proteins 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4969.1.S1_at	B	B1S	POPTR_0008s08040	POPTR_0008s08040 (1:218)	NA	NA	A4GSN8	Nuclear-pore anchor	AT1G79280.1	nuclear pore anchor 	LOC_Os02g50790.1	"nuclear-pore anchor, putative, expressed"	Medtr2g085400.1	Alkaline phosphatase; Prefoldin; TPR/MLP1/MLP2-like 	GO:0006606|protein import into nucleus	NA	GO:0005643|nuclear pore
Ptp.4974.1.S1_at	B	B1A	POPTR_0009s03150	POPTR_0009s03150 (1:64)	scaffold_9:3826137-3826663(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4983.1.S1_a_at	B	B1S	POPTR_0016s08480	POPTR_0016s08480 (8:2602)	scaffold_16:6294189-6296951(+) (11)	NA	NA	NA	AT3G53470.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35 Blast hits to 35 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g17660.2	expressed protein	Medtr7g120790.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4986.1.S1_at	B	B1S	POPTR_0007s08420	POPTR_0007s08420 (6:2782)	NA	NA	Q84TE6	NAC domain-containing protein 21/22	AT1G56010.2	NAC domain containing protein 1 	LOC_Os06g46270.1	"no apical meristem protein, putative, expressed"	Medtr2g076740.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.4987.2.S1_at	B	B1S	POPTR_0001s37670	POPTR_0001s37670 (0:172)	NA	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.499.1.A1_at	B	B1S	POPTR_0005s15800	POPTR_0005s15800 (6:80)	NA	NA	Q641Z5	Cation transport regulator-like protein 2	AT1G44790.1	ChaC-like family protein 	LOC_Os04g37580.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr1g037330.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4997.3.A1_at	B	B1S	POPTR_0014s12680	POPTR_0014s12680 (7:153)	NA	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5000.1.S1_at	B	B2S	POPTR_0005s27060	POPTR_0005s27060 (8:630)//POPTR_0002s01320 (0:529)	NA	NA	O82150	"ATP-dependent zinc metalloprotease FTSH, chloroplastic"	AT5G42270.1	FtsH extracellular protease family 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.5001.1.S1_at	B	B1S	POPTR_0004s06440	POPTR_0004s06440 (4:445)	scaffold_4:5204043-5208611(+) (10)	NA	Q93V43	Transcription factor TCP2	AT4G18390.2	"TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 "	LOC_Os07g05720.1	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5001.2.S1_at	B	B1S	POPTR_0004s06440	POPTR_0004s06440 (4:200)	NA	NA	Q93V43	Transcription factor TCP2	AT4G18390.2	"TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 "	LOC_Os07g05720.1	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5041.1.S1_at	B	B1S	POPTR_0006s09880	POPTR_0006s09880 (7:197)	NA	NA	O06423	GDP-mannose-dependent alpha-mannosyltransferase	AT5G01220.1	sulfoquinovosyldiacylglycerol 2 	LOC_Os07g01030.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr3g024590.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.5047.1.S1_at	B	B1S	POPTR_0022s00550	POPTR_0022s00550 (8:284)	NA	NA	NA	NA	AT4G24290.2	MAC/Perforin domain-containing protein 	LOC_Os07g07194.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr2g005520.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5069.1.S1_at	B	B1S	POPTR_0012s04100	POPTR_0012s04100 (3:296)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr6g080810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5077.1.S1_at	B	B1S	POPTR_0011s11210	POPTR_0011s11210 (6:75)	NA	NA	Q96453	14-3-3-like protein D	AT2G42590.2	general regulatory factor 9 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr2g092800.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.5077.1.S1_x_at	B	B1S	POPTR_0011s11210	POPTR_0011s11210 (7:160)	NA	NA	Q96453	14-3-3-like protein D	AT2G42590.2	general regulatory factor 9 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr2g092800.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.5080.1.S1_at	B	B1S	POPTR_0008s14950	POPTR_0008s14950 (7:616)	NA	NA	Q5KPA7	Vacuolar protein 8	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
Ptp.5083.1.S1_at	B	B1S	POPTR_0004s11040	POPTR_0004s11040 (2:354)	NA	NA	Q9BWU0	Kanadaptin	AT5G38840.1	SMAD/FHA domain-containing protein  	LOC_Os06g16430.1	"FHA domain containing protein, putative, expressed"	Medtr7g015550.1	"forkhead-associated domain-containing protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5094.1.S1_at	B	B1S	POPTR_0010s21950	POPTR_0010s21950 (7:219)	NA	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G12360.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5097.1.S1_at	B	B1S	POPTR_0004s08400	POPTR_0004s08400 (7:830)	NA	NA	Q9LQU5	"Nudix hydrolase 18, mitochondrial"	AT1G14860.1	nudix hydrolase homolog 18 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g087460.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.510.1.A1_at	B	B1S	POPTR_0004s23290	POPTR_0004s23290 (2:150)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5109.1.S1_at	B	B4S	POPTR_0002s02740	POPTR_0002s02800 (8:398)//POPTR_0002s02740 (8:398)//POPTR_0002s02790 (8:398)//POPTR_0002s02730 (5:398)	scaffold_2:1653979-1678773(+) (9)	NA	O65782	Cytochrome P450 83B1	AT4G31500.1	"cytochrome P450, family 83, subfamily B, polypeptide 1 "	LOC_Os12g32850.1	"cytochrome P450, putative, expressed"	Medtr1g028100.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.5111.1.S1_at	B	B1S	POPTR_0001s04710	POPTR_0001s04710 (8:359)	NA	NA	Q6QNM1	Casein kinase I	AT3G13670.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g005760.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5113.1.S1_at	B	B2S	POPTR_0005s00640	POPTR_0005s00650 (0:440)//POPTR_0005s00640 (7:353)	NA	NA	Q40392	TMV resistance protein N	AT1G72910.1	Toll-Interleukin-Resistance (TIR) domain-containing protein 	LOC_Os07g37950.1	expressed protein	Medtr4g109890.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
Ptp.512.1.S1_at	B	B1S	POPTR_0018s03000	POPTR_0018s03000 (0:425)	NA	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g48860.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5137.1.S1_at	B	B1S	POPTR_0002s24540	POPTR_0002s24540 (5:202)	NA	NA	Q9SFU3	Purple acid phosphatase 15	AT3G07130.1	purple acid phosphatase 15 	LOC_Os03g63074.2	"Ser/Thr protein phosphatase family protein, expressed"	Medtr3g105420.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
Ptp.5147.1.S1_at	B	B1S	POPTR_0001s08470	POPTR_0001s08470 (5:545)	NA	NA	NA	NA	AT4G22920.1	non-yellowing 1 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.1	"senescence-inducible chloroplast stay-green protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5149.1.S1_at	B	B1S	POPTR_0009s03130	POPTR_0009s03130 (8:918)	NA	NA	O95628	CCR4-NOT transcription complex subunit 4	AT5G60170.2	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g01190.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g080070.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5151.2.S1_at	B	B1S	POPTR_0018s00810	POPTR_0018s00810 (8:472)	NA	NA	Q66GV0	Protein Mpv17	AT3G24570.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os01g12800.1	"peroxisomal membrane protein, putative, expressed"	Medtr1g009450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
Ptp.5156.1.S1_at	B	B1S	POPTR_0018s01630	POPTR_0018s01630 (0:14)	scaffold_18:1518667-1518727(+) (11)	NA	NA	NA	AT3G47650.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os06g22690.1	"bundle sheath defective protein 2, putative, expressed"	Medtr3g136830.1	"Chaperon P13.9, putative "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.516.1.A1_at	B	B1S	POPTR_0007s05370	POPTR_0007s05370 (1:93)	NA	NA	Q8VCN9	Tubulin-specific chaperone C	AT4G39920.1	C-CAP/cofactor C-like domain-containing protein 	LOC_Os02g35110.1	"tubulin binding cofactor C, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.516.1.A1_s_at	B	B1S	POPTR_0007s05370	POPTR_0007s05370 (5:313)	scaffold_7:3472903-3473345(-) (11)	NA	Q8VCN9	Tubulin-specific chaperone C	AT4G39920.1	C-CAP/cofactor C-like domain-containing protein 	LOC_Os02g35110.1	"tubulin binding cofactor C, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5166.1.S1_at	B	B1S	POPTR_0011s12440	POPTR_0011s12440 (8:214)	NA	NA	Q2KIY1	Peroxisomal membrane protein 2	AT1G52870.2	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os03g38730.1	"peroxisomal membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
Ptp.5170.1.S1_at	B	B1S	POPTR_0011s14760	POPTR_0011s14760 (8:1537)	NA	NA	NA	NA	AT1G79070.1	SNARE-associated protein-related 	LOC_Os08g03590.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5171.1.S1_at	B	B1S	POPTR_0006s22830	POPTR_0006s22830 (4:143)	scaffold_6:21724354-21725229(+) (11)	NA	Q9LZB8	"ABC transporter B family member 29, chloroplastic"	AT5G03910.1	ABC2 homolog 12 	LOC_Os04g33700.1	"ABC transmembrane transporter domain containing protein, expressed"	NA	NA	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.5175.1.S1_at	B	B1S	POPTR_0007s14890	POPTR_0007s14890 (8:775)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5177.1.A1_at	B	B1S	POPTR_0001s30070	POPTR_0001s30070 (8:920)	NA	NA	P34409	DNA polymerase kappa	AT1G49980.1	DNA/RNA polymerases superfamily protein 	LOC_Os03g42010.1	"DNA-directed polymerase, putative, expressed"	Medtr5g005380.1	UMUC-like DNA-repair protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
Ptp.5179.1.A1_s_at	B	B2S	POPTR_0011s09960	POPTR_0011s09960 (3:1379)//POPTR_0174s00250 (3:1004)	scaffold_11:12407536-12411883(+) (11)//scaffold_174:44399-48720(-) (11)	NA	Q8LHP0	Transcription elongation factor 1 homolog	AT5G46030.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g43730.1	"transcription elongation factor 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5181.2.S1_at	B	B1S	POPTR_0005s24490	POPTR_0005s24490 (1:228)	NA	NA	Q96303	Inorganic phosphate transporter 1-4	AT2G38940.1	phosphate transporter 1;4 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.5190.1.S1_at	B	B1S	POPTR_0002s03430	POPTR_0002s03430 (6:819)	NA	NA	Q93YN9	Inositol-pentakisphosphate 2-kinase	AT1G22100.1	Inositol-pentakisphosphate 2-kinase family protein 	LOC_Os04g56580.1	"inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed"	NA	NA	NA	GO:0035299|inositol pentakisphosphate 2-kinase activity||GO:0005524|ATP binding	NA
Ptp.5191.1.S1_at	B	B1S	POPTR_0010s02700	POPTR_0010s02700 (7:1343)	NA	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT5G18810.1	SC35-like splicing factor 28 	LOC_Os03g24890.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g139830.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5193.2.A1_at	B	B1S	POPTR_0001s03560	POPTR_0001s03560 (0:149)	NA	NA	NA	NA	AT1G73060.1	Low  PSII Accumulation 3 	LOC_Os02g02520.1	expressed protein	Medtr4g021740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5199.1.S1_at	B	B1S	POPTR_0016s00830	POPTR_0016s00830 (8:414)	scaffold_16:307674-308166(-) (10)	NA	O23482	Oligopeptide transporter 3	AT4G16370.1	oligopeptide transporter 	LOC_Os03g54000.1	"oligopeptide transporter, putative, expressed"	Medtr2g010070.1	"Peptidase aspartic, active site; Oligopeptide transporter OPT superfamily "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5204.1.S1_at	B	B1S	POPTR_0003s18640	POPTR_0003s18640 (3:213)	NA	NA	NA	NA	NA	NA	NA	NA	AC233655_30.1	hypothetical protein AC233655.2 191117-192500 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5208.1.S1_a_at	B	B1S	POPTR_0005s20560	POPTR_0005s20560 (2:60)	scaffold_5:19618809-19619185(+) (9)	NA	A9PJQ8	"NAD(P)H-quinone oxidoreductase subunit M, chloroplastic"	AT4G37925.1	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex 	LOC_Os04g45600.1	"NDH-M H PLASTOQUINONE DEHY, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	"GO:0016655|""oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor"""	NA
Ptp.5208.1.S1_at	B	B1A	POPTR_0005s20570	POPTR_0005s20570 (0:15)	scaffold_5:19619028-19619156(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5208.2.A1_a_at	B	B1S	POPTR_0005s20560	POPTR_0005s20560 (2:60)	scaffold_5:19618809-19619042(+) (9)	NA	A9PJQ8	"NAD(P)H-quinone oxidoreductase subunit M, chloroplastic"	AT4G37925.1	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex 	LOC_Os04g45600.1	"NDH-M H PLASTOQUINONE DEHY, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	"GO:0016655|""oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor"""	NA
Ptp.5211.1.S1_at	B	B1S	POPTR_0011s13980	POPTR_0011s13980 (4:395)	NA	NA	NA	NA	AT4G21780.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr8g146510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5226.1.S1_at	B	B1S	POPTR_0009s11170	POPTR_0009s11170 (5:530)	NA	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	NA	NA	Medtr4g092810.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
Ptp.5235.1.S1_s_at	B	B1S	POPTR_0006s10980	POPTR_0006s10980 (8:31)	NA	NA	Q148K0	Transcription elongation factor A protein 2	AT2G38560.1	transcript elongation factor IIS 	LOC_Os03g60130.2	"transcription elongation factor protein, putative, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.5244.1.S1_at	B	B1S	POPTR_0006s27170	POPTR_0006s27170 (8:296)	NA	NA	P31853	"ATP synthase subunit b', chloroplastic"	AT4G32260.1	"ATPase, F0 complex, subunit B/B', bacterial/chloroplast "	LOC_Os03g17070.1	"ATP synthase B chain, chloroplast precursor, putative, expressed"	Medtr3g137480.1	"H+-transporting two-sector ATPase, B/B subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0045263|""proton-transporting ATP synthase complex, coupling factor F(o)"""
Ptp.5249.1.S1_at	B	B1S	POPTR_0012s00600	POPTR_0012s00600 (6:559)	NA	NA	Q6LA42	Two-component response regulator-like APRR5	AT5G24470.1	pseudo-response regulator 5 	LOC_Os09g36220.2	"response regulator receiver domain containing protein, expressed"	Medtr3g122660.2	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
Ptp.526.1.A1_at	B	B1S	POPTR_0006s23520	POPTR_0006s23520 (6:258)	NA	NA	P83291	NADH-cytochrome b5 reductase-like protein	AT5G20080.1	FAD/NAD(P)-binding oxidoreductase 	LOC_Os01g07910.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr8g119780.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5268.1.S1_at	B	B1S	POPTR_0001s15530	POPTR_0001s15530 (1:98)	NA	NA	O65202	Peroxisomal acyl-coenzyme A oxidase 1	AT4G16760.1	acyl-CoA oxidase 1 	LOC_Os06g01390.1	"acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed"	Medtr8g105410.1	Acyl-CoA dehydrogenase C-terminal-like; 	GO:0006635|fatty acid beta-oxidation||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity||GO:0003997|acyl-CoA oxidase activity	GO:0005777|peroxisome
Ptp.528.1.A1_at	B	B1S	POPTR_0019s08540	POPTR_0019s08540 (7:97)	NA	NA	P35017	"Superoxide dismutase [Mn], mitochondrial"	AT3G10920.1	manganese superoxide dismutase 1 	LOC_Os05g25850.1	"superoxide dismutase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
Ptp.5289.1.S1_at	B	B2S	POPTR_0010s03960	POPTR_0010s04490 (0:506)//POPTR_0010s03960 (4:496)	NA	NA	Q06398	Probable glutathione S-transferase GSTU6	AT1G10370.1	Glutathione S-transferase family protein 	LOC_Os10g38140.1	"glutathione S-transferase, putative, expressed"	Medtr8g074880.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5291.2.S1_a_at	B	B1S	POPTR_0005s05630	POPTR_0005s05630 (8:40)	NA	NA	NA	NA	AT1G72030.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os07g16130.1	"acetyltransferase, GNAT family, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.5292.1.S1_s_at	B	B1S	POPTR_0003s21020	POPTR_0003s21020 (0:15)	scaffold_3:19339810-19340248(+) (11)	NA	Q9LVC0	Arabinogalactan peptide 14	AT5G56540.1	arabinogalactan protein 14 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5294.1.S1_at	B	B1S	POPTR_0012s09820	POPTR_0012s09820 (7:409)	scaffold_12:10733090-10733642(-) (9)	NA	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT4G02480.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g117540.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.5299.1.A1_at	B	B1S	POPTR_0002s03810	POPTR_0002s03810 (2:221)	NA	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.531.1.A1_at	B	B2S	POPTR_0001s28560	POPTR_0001s28560 (5:120)//POPTR_0001s28550 (0:51)	NA	NA	P51851	Pyruvate decarboxylase isozyme 2 (Fragment)	AT5G54960.1	pyruvate decarboxylase-2 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	AC233100_56.1	"Thiamine pyrophosphate enzyme, N-terminal TPP binding region AC233100.6 213439-209408 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5318.1.S1_at	B	B1S	POPTR_0009s15910	POPTR_0009s15910 (8:1035)	NA	NA	Q5ZJK8	T-complex protein 1 subunit eta	AT3G11830.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g47320.1	"T-complex protein, putative, expressed"	Medtr5g094680.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5347.1.S1_x_at	B	B1S	POPTR_0002s20880	POPTR_0002s20880 (3:430)	NA	NA	P46423	Glutathione S-transferase	AT1G02930.2	glutathione S-transferase 6 	LOC_Os01g70770.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5348.1.S1_at	B	B1S	POPTR_0017s05700	POPTR_0017s05700 (4:173)	scaffold_17:4469268-4469649(+) (11)	NA	Q96288	Salt tolerance protein	AT1G06040.1	B-box zinc finger family protein 	LOC_Os04g41560.2	"B-box zinc finger family protein, putative, expressed"	Medtr2g118390.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.535.1.S1_s_at	B	B1S	POPTR_0014s18530	POPTR_0014s18530 (2:311)	scaffold_14:15795784-15798249(-) (11)	NA	Q9SZD4	26S proteasome regulatory subunit 4 homolog A	AT4G29040.1	regulatory particle AAA-ATPase 2A 	LOC_Os03g18690.1	"26S protease regulatory subunit 4, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.5355.1.S1_at	B	B1S	POPTR_0015s14210	POPTR_0015s14210 (8:503)	NA	NA	Q9FMY1	Cytochrome P450 86B1	AT4G39490.1	"cytochrome P450, family 96, subfamily A, polypeptide 10 "	LOC_Os03g04650.1	"cytochrome P450 protein, putative, expressed"	Medtr4g137010.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.536.2.A1_at	B	B1S	POPTR_0004s19500	POPTR_0004s19500 (8:359)	NA	NA	Q9ZNU9	Zinc finger A20 and AN1 domain-containing stress-associated protein 3	AT2G27580.2	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g069850.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.5362.1.S1_at	B	B1S	POPTR_0014s02420	POPTR_0014s02420 (3:603)	NA	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.5365.1.S1_x_at	B	B1S	POPTR_0009s12710	POPTR_0009s12710 (4:449)	NA	NA	Q944G9	"Probable fructose-bisphosphate aldolase 2, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.5367.1.S1_at	B	B2S	POPTR_0001s37170	POPTR_0001s37160 (0:217)//POPTR_0001s37170 (2:216)	NA	NA	Q9FJ62	Probable glycerophosphoryl diester phosphodiesterase 1	AT4G26690.1	PLC-like phosphodiesterase family protein 	LOC_Os04g39610.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr5g101680.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.5377.1.S1_s_at	B	B1S	POPTR_0010s18590	POPTR_0010s18590 (7:297)	NA	NA	P62313	U6 snRNA-associated Sm-like protein LSm6	AT2G43810.2	Small nuclear ribonucleoprotein family protein 	LOC_Os02g30624.2	"LSM domain containing protein, expressed"	Medtr4g110140.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.539.1.A1_at	B	B1S	POPTR_0002s26220	POPTR_0002s26220 (6:783)	NA	NA	Q9LN50	Probable methyltransferase PMT28	AT1G19430.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g56390.1	"tRNA wybutosine-synthesizing protein 1, putative, expressed"	Medtr4g143020.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0010181|FMN binding||GO:0008168|methyltransferase activity||GO:0016491|oxidoreductase activity	NA
Ptp.5390.1.S1_at	B	B1S	POPTR_0001s04170	POPTR_0001s04170 (7:770)	NA	NA	P0C582	Putative mitochondrial 2-oxoglutarate/malate carrier protein	AT5G19760.1	Mitochondrial substrate carrier family protein 	LOC_Os05g11780.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g134510.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5395.1.S1_at	B	B1S	POPTR_0004s23290	POPTR_0004s23290 (8:730)	scaffold_4:22073782-22074645(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5397.1.A1_at	B	B1S	POPTR_0004s17110	POPTR_0004s17110 (3:44)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5398.1.S1_at	B	B1S	POPTR_0018s12740	POPTR_0018s12740 (4:114)	scaffold_18:13256173-13256475(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT3G01300.1	Protein kinase superfamily protein 	LOC_Os06g07230.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr8g121240.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.541.1.A1_at	B	B3S	POPTR_0010s02750	POPTR_0010s02750 (8:363)//POPTR_0388s00200 (2:225)//POPTR_0001s27590 (0:15)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5417.1.S1_a_at	B	B1S	POPTR_0007s14010	POPTR_0007s14010 (6:35)	scaffold_7:13956144-13959022(-) (10)	NA	Q94G00	Peptidyl-prolyl cis-trans isomerase Pin1	AT2G18040.1	"peptidylprolyl cis/trans isomerase, NIMA-interacting 1 "	LOC_Os04g56800.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g090170.1	PpiC-type peptidyl-prolyl cis-trans isomerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.542.1.S1_at	B	B1S	POPTR_0381s00230	POPTR_0381s00230 (0:386)	NA	NA	Q0ITS8	60S ribosomal protein L10-1	AT1G26910.1	Ribosomal protein L16p/L10e family protein 	LOC_Os11g11390.1	"ribosomal protein, putative, expressed"	Medtr2g132470.1	Ribosomal protein L10E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5426.1.S1_at	B	B1S	POPTR_0011s15870	POPTR_0011s15870 (1:175)	NA	NA	Q9SPE5	Gamma-soluble NSF attachment protein	AT4G20410.1	gamma-soluble NSF attachment protein 	LOC_Os04g52760.1	"gamma-soluble NSF attachment protein, putative, expressed"	AC225479_22.1	Tetratricopeptide-like helical AC225479.3 102118-96445 F EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005783|endoplasmic reticulum||GO:0005794|Golgi apparatus
Ptp.543.1.A1_at	B	B1S	POPTR_0006s21370	POPTR_0006s21370 (0:6)	NA	NA	Q9NYP3	Protein downstream neighbor of Son	AT3G54750.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. 	LOC_Os12g42700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5443.2.A1_at	B	B2S	POPTR_0011s02000	POPTR_0011s02000 (8:64)//POPTR_0011s01970 (0:58)	NA	NA	Q41141	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta	AT1G12000.1	Phosphofructokinase family protein 	LOC_Os06g13810.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed"	Medtr8g147360.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5454.1.S1_at	B	B2S	POPTR_0002s12150	POPTR_0002s12150 (6:468)//POPTR_1058s00200 (3:445)	NA	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5467.1.A1_at	B	B1S	POPTR_0001s36230	POPTR_0001s36230 (7:439)	NA	NA	NA	NA	AT3G27340.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376); Has 1035 Blast hits to 1035 proteins in 399 species: Archae - 0; Bacteria - 765; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink). "	LOC_Os02g10430.1	"1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed"	Medtr3g069210.1	Protein of unknown function DUF971 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5472.1.S1_at	B	B1S	POPTR_1455s00200	POPTR_1455s00200 (0:713)	NA	NA	Q43594	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5482.1.S1_at	B	B1S	POPTR_0013s07630	POPTR_0013s07630 (8:298)	NA	NA	Q9LX65	V-type proton ATPase subunit H	AT3G42050.1	vacuolar ATP synthase subunit H family protein 	LOC_Os07g36470.1	"vacuolar ATP synthase subunit H, putative, expressed"	Medtr8g093980.1	"Cytochrome b5; V-ATPase subunit H, C-terminal "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0000221|""vacuolar proton-transporting V-type ATPase, V1 domain"""
Ptp.5488.2.A1_at	B	B1S	POPTR_0017s08110	POPTR_0017s08110 (2:84)	NA	NA	NA	NA	AT1G15800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 56 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g137930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.549.3.S1_at	B	B1S	POPTR_0008s13320	POPTR_0008s13320 (8:258)	NA	NA	Q9BZV1	UBX domain-containing protein 6	AT2G01650.1	plant UBX domain-containing protein 2 	LOC_Os09g23690.1	"UBX domain containing protein, expressed"	Medtr4g157470.1	"UBX; PUG; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5490.1.S1_at	B	B1S	POPTR_0010s07850	POPTR_0010s07850 (6:1352)	NA	NA	P31049	Uncharacterized methyltransferase in lpd-3 5'region	AT3G23530.1	Cyclopropane-fatty-acyl-phospholipid synthase 	LOC_Os12g16650.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr1g064910.1	Cyclopropane-fatty-acyl-phospholipid synthase 	GO:0008610|lipid biosynthetic process	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity||GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
Ptp.5491.2.S1_at	B	B1S	POPTR_0004s08600	POPTR_0004s08600 (2:1044)	scaffold_4:7152789-7154077(-) (9)	NA	NA	NA	AT5G16720.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5492.3.S1_at	B	B1S	POPTR_0006s27630	POPTR_0006s27630 (3:167)	NA	NA	NA	NA	AT4G32020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5499.1.A1_a_at	B	B2S	POPTR_0005s19480	POPTR_0005s19480 (4:1034)//POPTR_0005s19470 (1:118)	scaffold_5:18341053-18343548(+) (10)	NA	Q39236	Transcription initiation factor IIA subunit 2	AT4G24440.2	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 	LOC_Os05g01710.3	"transcription initiation factor IIA gamma chain, putative, expressed"	Medtr7g005310.1	"Transcription initiation factor IIA, gamma subunit; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005672|transcription factor TFIIA complex
Ptp.55.1.A1_at	B	B1S	POPTR_0012s14580	POPTR_0012s14580 (8:398)	NA	NA	Q6GLP4	Protein RMD5 homolog A	AT4G37880.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os06g38940.2	"RMD5 homolog A, putative, expressed"	Medtr8g078780.1	"Zinc finger, RING-type; Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5501.1.S1_at	B	B1S	POPTR_0005s23260	POPTR_0005s23260 (5:409)	NA	NA	NA	NA	NA	NA	LOC_Os07g38470.1	expressed protein	Medtr5g006290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.551.1.S1_at	B	B1S	POPTR_0009s03880	POPTR_0009s03880 (6:531)	NA	NA	Q8VZI8	"ATP-dependent zinc metalloprotease FTSH 10, mitochondrial"	AT1G07510.1	FTSH protease 10 	LOC_Os05g38400.1	"OsFtsH8  FtsH protease, homologue of AtFtsH3/10, expressed"	Medtr4g084650.1	"AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.5520.1.S1_at	B	B1S	POPTR_0002s17570	POPTR_0002s17570 (8:714)	NA	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.5521.1.S1_at	B	B1S	POPTR_0006s12180	POPTR_0006s12180 (8:500)	NA	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G36720.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5531.1.S1_at	B	B1S	POPTR_0003s00890	POPTR_0003s00890 (7:477)	NA	NA	Q8L7G0	Auxin response factor 1	AT1G59750.4	auxin response factor 1 	LOC_Os04g36054.1	"auxin response factor 9, putative, expressed"	Medtr2g005100.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5534.1.A1_s_at	B	B1S	POPTR_0003s13600	POPTR_0003s13600 (8:31)	NA	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os04g57220.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.5541.1.A1_at	B	B1S	POPTR_0005s23680	POPTR_0005s23680 (5:275)	NA	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5543.1.S1_at	B	B1S	POPTR_0012s01530	POPTR_0012s01530 (2:474)	NA	NA	Q9FGL9	Polypyrimidine tract-binding protein homolog 2	AT5G53180.1	polypyrimidine tract-binding protein 2 	LOC_Os01g43170.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr3g124540.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5544.1.S1_at	B	B1S	POPTR_0014s17790	POPTR_0014s17790 (7:764)	NA	NA	O22466	WD-40 repeat-containing protein MSI1	AT5G58230.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5547.1.S1_at	B	B1S	POPTR_0002s03560	POPTR_0002s03560 (8:300)	NA	NA	O48671	Protein RER1B	AT2G21600.1	endoplasmatic reticulum retrieval protein 1B 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
Ptp.5554.1.S1_at	B	B1S	POPTR_0019s10350	POPTR_0019s10350 (3:639)	NA	NA	NA	NA	AT4G32480.1	Protein of unknown function (DUF506)  	LOC_Os01g54340.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr5g008790.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5554.1.S1_s_at	B	B1S	POPTR_0019s10350	POPTR_0019s10350 (5:411)	NA	NA	NA	NA	AT4G32480.1	Protein of unknown function (DUF506)  	LOC_Os01g54340.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr5g008790.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5555.1.S1_at	B	B1S	POPTR_0001s39220	POPTR_0001s39220 (0:445)	NA	NA	Q9SYM4	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1"	AT1G78580.1	trehalose-6-phosphate synthase 	LOC_Os05g44210.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g136450.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.556.1.A1_s_at	B	B1S	POPTR_0005s20690	POPTR_0005s20690 (7:95)	NA	NA	NA	NA	AT1G44000.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11911.1); Has 216 Blast hits to 212 proteins in 76 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.1	"senescence-inducible chloroplast stay-green protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5562.1.S1_at	B	B1S	POPTR_0002s02200	POPTR_0002s02200 (3:373)	NA	NA	P83332	Thaumatin-like protein 1	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5564.2.A1_at	B	B1S	POPTR_0001s00850	POPTR_0001s00850 (5:447)	NA	NA	Q5KII2	Branchpoint-bridging protein	AT5G51300.3	splicing factor-related 	LOC_Os04g31620.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
Ptp.5565.1.S1_at	B	B1S	POPTR_0012s13780	POPTR_0012s13780 (8:522)	NA	NA	Q1PSI9	L-idonate 5-dehydrogenase	AT5G51970.2	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os08g43190.2	"dehydrogenase, putative, expressed"	AC229727_23.1	"Alcohol dehydrogenase superfamily, zinc-containing; AC229727.6 129240-119234 E EGN_Mt090430 200"	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.5567.2.A1_at	B	B1S	POPTR_0001s03090	POPTR_0001s03090 (4:203)	NA	NA	O80501	Ras-related protein RABH1B	AT2G44610.1	Ras-related small GTP-binding family protein 	LOC_Os07g31370.1	"ras-related protein, putative, expressed"	Medtr5g014080.1	"Ras small GTPase, Rab type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5578.1.S1_at	B	B1S	POPTR_0005s25500	POPTR_0005s25500 (7:244)	NA	NA	Q6J163	Auxin-induced protein 5NG4	AT1G75500.2	Walls Are Thin 1 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g028570.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.5581.1.S1_at	B	B2S	POPTR_0003s00480	POPTR_0003s00480 (2:362)//POPTR_0003s00520 (1:26)	scaffold_3:268725-269987(+) (10)	NA	Q8W3M6	Ubiquitin-like domain-containing CTD phosphatase	AT4G06599.1	ubiquitin family protein 	LOC_Os01g65450.2	"ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed"	Medtr4g137220.1	Ubiquitin; NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5590.1.S1_at	B	B1S	POPTR_0011s13990	POPTR_0011s13990 (8:494)	NA	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT4G27060.1	ARM repeat superfamily protein 	LOC_Os07g33630.1	"HEAT repeat family protein, putative, expressed"	Medtr3g067150.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5590.2.A1_at	B	B1S	POPTR_0011s14000	POPTR_0011s14000 (8:296)	NA	NA	Q59156	DNA polymerase I	AT1G50840.1	polymerase gamma 2 	LOC_Os08g07840.1	"PolI-like DNA polymerase, putative, expressed"	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
Ptp.5593.1.S1_at	B	B2S	POPTR_0006s15870	POPTR_0006s15870 (8:1763)//POPTR_0006s15860 (2:270)	scaffold_6:13533540-13539185(-) (11)	NA	NA	NA	AT4G26240.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g37850.1	expressed protein	Medtr4g160520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5596.1.S1_at	B	B1S	POPTR_0006s13630	POPTR_0006s13630 (1:176)	NA	NA	NA	NA	AT5G02770.1	unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). 	LOC_Os03g17490.2	expressed protein	AC235022_12.1	hypothetical protein AC235022.1 78747-76265 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5606.1.S1_at	B	B1S	POPTR_0009s15060	POPTR_0009s15060 (7:1510)	NA	NA	NA	NA	AT2G27775.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5611.1.S1_at	B	B1S	POPTR_0009s12360	POPTR_0009s12360 (3:528)	NA	NA	Q9SIW1	BEL1-like homeodomain protein 7	AT2G16400.1	BEL1-like homeodomain 7 	LOC_Os03g47740.3	"homeodomain protein, putative, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.5615.1.S1_at	B	B1S	POPTR_0015s13330	POPTR_0015s13330 (7:537)	NA	NA	Q9FUL4	60S ribosomal protein L24	AT2G36620.1	ribosomal protein L24 	LOC_Os05g40820.1	"ribosomal protein L24, putative, expressed"	Medtr1g073730.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5632.3.S1_at	B	B1S	POPTR_0006s14400	POPTR_0006s14400 (8:92)	NA	NA	Q8RWQ9	Thiol protease aleurain-like	AT3G45310.1	Cysteine proteinases superfamily protein 	LOC_Os09g27030.2	"oryzain gamma chain precursor, putative, expressed"	Medtr4g109600.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.5635.2.S1_at	B	B1S	POPTR_0015s05710	POPTR_0015s05710 (1:96)	NA	NA	Q9SH59	Reticulon-like protein B3	AT1G64090.1	Reticulan like protein B3 	LOC_Os05g45050.2	"reticulon domain containing protein, putative, expressed"	Medtr1g126140.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.5637.1.A1_s_at	B	B1S	POPTR_0008s06420	POPTR_0008s06420 (6:102)	scaffold_8:3811275-3811536(+) (10)	NA	P59082	Lachrymatory-factor synthase	AT4G32870.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os01g52570.1	"lachrymatory factor synthase, putative, expressed"	Medtr5g089090.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5644.1.S1_at	B	B1S	POPTR_0002s11680	POPTR_0002s11680 (2:131)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5647.1.S1_at	B	B2S	POPTR_0004s16660	POPTR_0004s16660 (7:1280)//POPTR_0009s12360 (0:1279)	NA	NA	O65685	BEL1-like homeodomain protein 6	AT4G34610.2	BEL1-like homeodomain 6 	LOC_Os12g43950.4	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.5663.2.A1_at	B	B1S	POPTR_0013s05700	POPTR_0013s05700 (0:130)	NA	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os05g40980.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5667.1.S1_s_at	B	B2S	POPTR_0018s06580	POPTR_0018s06580 (2:502)//POPTR_0018s06570 (1:59)	scaffold_18:6607294-6616261(+) (11)	NA	NA	NA	AT5G20060.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g07960.3	"acyl-protein thioesterase, putative, expressed"	Medtr3g136590.1	Phospholipase/Carboxylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5677.1.S1_at	B	B1S	POPTR_0012s09310	POPTR_0012s09310 (8:368)	NA	NA	Q9C5M8	Probable pectate lyase 18	AT4G24780.2	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5683.1.S1_at	B	B1S	POPTR_0011s15130	POPTR_0011s15130 (0:953)	NA	NA	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.5685.1.S1_at	B	B1S	POPTR_0017s11530	POPTR_0017s11530 (1:5977)	NA	NA	Q9LHA4	V-type proton ATPase subunit d2	AT3G28715.1	"ATPase, V0/A0 complex, subunit C/D "	LOC_Os01g40470.1	"vacuolar ATP synthase subunit d, putative, expressed"	Medtr7g009000.1	"H+-transporting two-sector ATPase, C (AC39) subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.5689.1.S1_at	B	B1S	POPTR_0009s07500	POPTR_0009s07500 (6:166)	NA	NA	O95271	Tankyrase-1	AT5G12320.1	ankyrin repeat family protein 	LOC_Os07g46500.2	"ankyrin repeat domain containing protein, putative, expressed"	Medtr3g100680.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5697.1.S1_s_at	B	B1S	POPTR_0005s22140	POPTR_0005s22140 (1:290)	scaffold_5:21110669-21111055(-) (11)	NA	Q6YYB0	Uncharacterized protein Os08g0359500	AT4G02450.2	HSP20-like chaperones superfamily protein 	LOC_Os03g26460.1	"CS domain containing protein, putative, expressed"	Medtr6g033380.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5699.2.S1_at	B	B1S	POPTR_0010s20140	POPTR_0010s20140 (3:434)	NA	NA	Q9LMK0	60S ribosomal protein L35a-1	AT1G07070.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5703.1.S1_at	B	B1S	POPTR_0019s11990	POPTR_0019s11990 (7:2042)	NA	NA	NA	NA	AT2G42570.1	TRICHOME BIREFRINGENCE-LIKE 39 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr4g109510.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5705.1.S1_at	B	B1S	POPTR_0011s07630	POPTR_0011s07630 (8:868)	NA	NA	P51850	Pyruvate decarboxylase isozyme 1	AT5G01320.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr2g019000.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
Ptp.5708.1.S1_at	B	B1S	POPTR_0007s04030	POPTR_0007s04030 (8:554)	NA	NA	O15488	Glycogenin-2	AT3G18660.2	plant glycogenin-like starch initiation protein 1 	LOC_Os01g65780.2	"glycosyl transferase, putative, expressed"	Medtr3g143690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.5714.1.S1_at	B	B1S	POPTR_0015s09290	POPTR_0015s09290 (6:311)	NA	NA	Q9LPV5	High affinity nitrate transporter 2.5	AT1G12940.1	nitrate transporter2.5 	LOC_Os01g50820.1	"transporter, major facilitator family, putative, expressed"	AC233663_16.1	"High affinity nitrate transporter, putative AC233663.2 118942-120870 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5716.1.S1_at	B	B1S	POPTR_0002s09640	POPTR_0002s09640 (7:539)	NA	NA	Q93Y91	Sugar transport protein 5	AT1G34580.1	Major facilitator superfamily protein 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr3g009520.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.5718.1.S1_at	B	B2S	POPTR_0008s15010	POPTR_0008s15010 (8:648)//POPTR_0008s15020 (7:643)	NA	NA	Q9SBA7	Sugar transport protein 8	AT5G26250.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr1g132720.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.5724.1.S1_at	B	B1S	POPTR_0571s00210	POPTR_0571s00210 (8:500)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g126590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5732.1.S1_s_at	B	B1S	POPTR_0007s00300	POPTR_0007s00300 (5:752)	NA	NA	P46519	Desiccation protectant protein Lea14 homolog	AT2G44060.2	"Late embryogenesis abundant protein, group 2 "	LOC_Os07g17120.1	"late embryogenesis abundant protein, putative, expressed"	Medtr5g095950.1	Late embryogenesis abundant protein 2 	GO:0009269|response to desiccation	NA	NA
Ptp.5740.3.S1_a_at	B	B1S	POPTR_0002s10440	POPTR_0002s10440 (7:1061)	NA	NA	NA	NA	AT5G49710.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g54080.2	expressed protein	Medtr5g074990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5744.1.S1_at	B	B1S	POPTR_0002s19720	POPTR_0002s19720 (2:449)	NA	NA	P24068	Ocs element-binding factor 1	AT3G62420.1	basic region/leucine zipper motif 53 	LOC_Os12g37415.1	expressed protein	Medtr1g106720.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.5753.1.S1_x_at	B	B1S	POPTR_0012s08330	POPTR_0012s08330 (5:508)	NA	NA	Q9D7P6	"Iron-sulfur cluster assembly enzyme ISCU, mitochondrial"	AT4G22220.1	SufE/NifU family protein 	LOC_Os01g47340.1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"	Medtr3g114000.1	FeS cluster assembly scaffold IscU 	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
Ptp.5773.1.S1_at	B	B1S	POPTR_0016s11850	POPTR_0016s11850 (8:857)	NA	NA	Q7XJR2	"Probable anion transporter 3, chloroplastic"	AT2G38060.1	phosphate transporter 4;2 	LOC_Os05g37820.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5775.1.S1_at	B	B1S	POPTR_0012s13350	POPTR_0012s13350 (7:1243)	NA	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT5G62070.1	IQ-domain 23 	LOC_Os04g48160.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g129280.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5777.1.S1_at	B	B1S	POPTR_0006s11770	POPTR_0006s11770 (6:1099)	NA	NA	Q6V9I6	Histone deacetylase HDT1	AT5G03740.1	histone deacetylase 2C 	LOC_Os05g51830.1	"ZOS5-12 - C2H2 zinc finger protein, expressed"	Medtr4g073420.1	"Histone deacetylase HDT1, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5781.2.S1_at	B	B1S	POPTR_0008s17560	POPTR_0008s17560 (5:321)	NA	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5792.1.S1_at	B	B1S	POPTR_0018s02370	POPTR_0018s02370 (6:388)	NA	NA	Q9SKZ2	Probable CCR4-associated factor 1 homolog 7	AT2G32070.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
Ptp.5798.2.S1_at	B	B1S	POPTR_0002s24910	POPTR_0002s24910 (7:216)	NA	NA	NA	NA	AT3G07310.1	Protein of unknown function (DUF760) 	LOC_Os11g26890.2	expressed protein	Medtr8g012790.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.580.1.A1_at	B	B1S	POPTR_0005s18810	POPTR_0005s18810 (0:1175)	NA	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G43100.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g40260.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr5g016240.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5815.1.S1_s_at	B	B2S	POPTR_0006s12710	POPTR_0006s12720 (3:549)//POPTR_0006s12710 (8:319)	scaffold_6:9861312-9864192(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5816.1.S1_at	B	B1S	POPTR_0015s14680	POPTR_0015s14680 (4:385)	NA	NA	P17407	21 kDa protein	AT5G62360.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.5823.1.S1_at	B	B1S	POPTR_0001s06720	POPTR_0001s06720 (8:197)	NA	NA	O43447	Peptidyl-prolyl cis-trans isomerase H	AT2G38730.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os03g59700.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g043670.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.5832.2.A1_at	B	B1S	POPTR_0010s20000	POPTR_0010s20000 (5:1445)	NA	NA	Q76P23	Mitochondrial substrate carrier family protein Q	AT2G39970.1	Mitochondrial substrate carrier family protein 	LOC_Os03g15860.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g089250.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5849.1.S1_at	B	B1S	POPTR_0016s03290	POPTR_0016s03290 (8:410)	NA	NA	NA	NA	AT2G40820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 203 Blast hits to 195 proteins in 64 species: Archae - 3; Bacteria - 13; Metazoa - 26; Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	LOC_Os01g59130.2	"proline-rich family protein, putative, expressed"	Medtr7g106120.1	"3'-5'-exoribonuclease/ RNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5851.1.S1_at	B	B1S	POPTR_0019s09090	POPTR_0019s09090 (0:309)	NA	NA	O24496	Hydroxyacylglutathione hydrolase cytoplasmic	AT3G10850.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os03g21460.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr5g077130.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5853.1.S1_at	B	B1S	POPTR_0012s00690	POPTR_0012s00690 (0:88)	NA	NA	Q94JX9	Nascent polypeptide-associated complex subunit alpha-like protein 2	AT3G49470.1	nascent polypeptide-associated complex subunit alpha-like protein 2 	LOC_Os05g31000.1	"nascent polypeptide-associated complex subunit alpha, putative, expressed"	Medtr3g122460.1	Ubiquitin-associated; Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5854.1.S1_at	B	B1S	POPTR_0011s07080	POPTR_0011s07080 (6:205)	NA	NA	P46287	60S ribosomal protein L11	AT5G45775.2	Ribosomal L5P family protein 	LOC_Os02g14059.1	"ribosomal protein L5, putative, expressed"	Medtr8g050250.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5854.1.S1_x_at	B	B1S	POPTR_0011s07080	POPTR_0011s07080 (7:480)	NA	NA	P46287	60S ribosomal protein L11	AT5G45775.2	Ribosomal L5P family protein 	LOC_Os02g14059.1	"ribosomal protein L5, putative, expressed"	Medtr8g050250.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5857.1.S1_at	B	B1S	POPTR_0015s10300	POPTR_0015s10300 (7:498)	NA	NA	NA	NA	AT3G48490.1	unknown protein; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g109780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5858.1.S1_at	B	B1S	POPTR_0012s05350	POPTR_0012s05350 (8:430)	scaffold_12:4962490-4967385(+) (11)	NA	Q9M9B4	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6	AT3G18410.2	Complex I subunit NDUFS6 	LOC_Os10g42540.1	expressed protein	Medtr6g028520.1	"NADH dehydrogenase iron-sulfur protein 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.586.1.A1_at	B	B1S	POPTR_0010s01660	POPTR_0010s01660 (0:279)	NA	NA	Q8G0J9	Probable peptidyl-prolyl cis-trans isomerase	AT1G26940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os11g38990.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g040220.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.5864.1.S1_at	B	B1S	POPTR_0004s16260	POPTR_0004s16260 (0:191)	NA	NA	Q03878	Glycine-rich RNA-binding protein	AT2G21660.2	"cold, circadian rhythm, and rna binding 2 "	LOC_Os12g43600.1	"RNA recognition motif containing protein, expressed"	Medtr4g095740.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.5864.3.A1_at	B	B1A	POPTR_0004s16260	POPTR_0004s16260 (8:507)	NA	NA	Q03878	Glycine-rich RNA-binding protein	AT2G21660.2	"cold, circadian rhythm, and rna binding 2 "	LOC_Os12g43600.1	"RNA recognition motif containing protein, expressed"	Medtr4g095740.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.5872.1.S1_at	B	B1S	POPTR_0015s13450	POPTR_0015s13450 (7:385)	NA	NA	Q32LJ2	ADP-ribosylation factor-related protein 1	AT5G52210.2	GTP-binding protein 1 	LOC_Os03g27450.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g035450.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5884.1.S1_at	B	B2S	POPTR_0017s11660	POPTR_0017s11660 (7:545)//POPTR_0017s11650 (4:544)	NA	NA	Q5EA79	Aldose 1-epimerase	AT3G47800.1	Galactose mutarotase-like superfamily protein 	LOC_Os02g36600.1	"aldose 1-epimerase, putative, expressed"	Medtr7g009340.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.5891.1.S1_s_at	B	B1S	POPTR_0014s05520	POPTR_0014s05520 (8:209)	NA	NA	NA	NA	AT2G44970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g01930.3	"lipase-related, putative, expressed"	Medtr8g006030.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5903.1.S1_at	B	B1S	POPTR_0008s14590	POPTR_0008s14590 (8:880)	NA	NA	NA	NA	AT1G60010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os09g21380.1	expressed protein	Medtr5g036610.1	"T10O24.15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5904.1.S1_at	B	B1S	POPTR_0006s08760	POPTR_0006s08760 (3:601)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.591.1.S1_at	B	B1S	POPTR_0018s04670	POPTR_0018s04670 (0:1506)	NA	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os05g46395.1	expressed protein	Medtr5g067660.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5910.1.S1_at	B	B1S	POPTR_0008s11060	POPTR_0008s11060 (8:522)	scaffold_8:6981787-6982355(+) (9)	NA	Q9SX33	Putative phospholipid-transporting ATPase 9	AT1G68710.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g29380.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr8g115700.1	Haloacid dehalogenase-like hydrolase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
Ptp.5915.1.S1_at	B	B1S	POPTR_0014s09180	POPTR_0014s09180 (0:301)	NA	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008800.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5921.1.S1_at	B	B1S	POPTR_0004s01470	POPTR_0004s01470 (8:31)	NA	NA	P29790	"ATP synthase gamma chain, chloroplastic"	AT4G04640.1	"ATPase, F1 complex, gamma subunit protein "	LOC_Os07g32880.1	"ATP synthase gamma chain, putative, expressed"	Medtr3g068860.1	"H+-transporting two-sector ATPase, gamma subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)"""
Ptp.5923.1.S1_at	B	B1S	POPTR_0001s46010	POPTR_0001s46010 (8:708)	scaffold_1:46524780-46525682(+) (10)	NA	NA	NA	AT3G51510.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os05g41190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5925.1.S1_s_at	B	B1S	POPTR_0002s23530	POPTR_0002s23530 (5:219)	NA	NA	P40691	Auxin-induced protein PCNT115	AT1G60710.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g26910.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g021880.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5925.2.S1_at	B	B4S	POPTR_0002s23510	POPTR_0166s00210 (7:205)//POPTR_0166s00200 (7:205)//POPTR_0002s23510 (7:205)//POPTR_0002s23530 (1:171)	NA	NA	P40691	Auxin-induced protein PCNT115	AT1G60690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g26910.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g021880.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5926.2.S1_a_at	B	B1S	POPTR_0003s16490	POPTR_0003s16490 (8:120)	scaffold_3:16087194-16087348(-) (11)	NA	Q53NF7	NAC domain-containing protein 71	AT5G13180.1	NAC domain containing protein 83 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.5931.1.S1_at	B	B2S	POPTR_0006s22630	POPTR_0006s22630 (6:60)//POPTR_0018s07520 (5:32)	NA	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
Ptp.5937.1.S1_at	B	B1S	POPTR_0013s02390	POPTR_0013s02390 (6:327)	NA	NA	Q75HV0	Cyclin-P3-1	AT3G05327.1	Cyclin family protein 	LOC_Os05g33040.3	"cyclin, putative, expressed"	Medtr2g103640.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5938.1.S1_at	B	B1S	POPTR_0014s15120	POPTR_0014s15120 (8:547)	NA	NA	O23049	"50S ribosomal protein L6, chloroplastic"	AT1G05190.1	Ribosomal protein L6 family 	LOC_Os03g54040.1	"ribosomal protein L6, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.594.3.A1_at	B	B1S	POPTR_0017s08150	POPTR_0017s08150 (3:176)	NA	NA	Q99460	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5941.1.S1_at	B	B1S	POPTR_0013s05420	POPTR_0013s05420 (7:1921)	NA	NA	NA	NA	AT3G03890.1	FMN binding 	LOC_Os07g38620.1	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	Medtr4g022840.1	FMN-binding split barrel 	NA	GO:0010181|FMN binding	NA
Ptp.5945.1.S1_at	B	B1S	POPTR_0002s05180	POPTR_0002s05180 (6:548)	NA	NA	NA	NA	AT4G02715.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g084110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5947.1.S1_at	B	B1S	POPTR_0014s01980	POPTR_0014s01980 (5:503)	NA	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC232874_16.1	"VEP1 ; binding, putative AC232874.1 54537-55990 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.595.1.A1_at	B	B1S	POPTR_0019s01500	POPTR_0019s01500 (6:468)	NA	NA	NA	NA	AT4G24290.2	MAC/Perforin domain-containing protein 	LOC_Os07g07194.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr4g144280.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5951.1.S1_at	B	B2S	POPTR_0004s01990	POPTR_0004s01990 (1:420)//POPTR_0011s00500 (1:398)	NA	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
Ptp.5953.1.S1_at	B	B1S	POPTR_0006s11070	POPTR_0006s11070 (5:1208)	scaffold_6:8391900-8393178(-) (11)	NA	P35131	Ubiquitin-conjugating enzyme E2 8	AT5G41700.5	ubiquitin conjugating enzyme 8 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.5957.1.S1_at	B	B1S	POPTR_0021s00800	POPTR_0021s00800 (6:2260)	NA	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G21690.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr5g034130.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
Ptp.5960.1.S1_at	B	B1A	POPTR_0001s32460	POPTR_0001s32460 (8:509)	NA	NA	NA	NA	AT4G13750.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os03g58910.2	expressed protein	Medtr4g133560.1	"ATP-binding region, ATPase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5967.1.S1_at	B	B1S	POPTR_0017s04740	POPTR_0017s04740 (4:525)	NA	NA	Q80Y75	DnaJ homolog subfamily B member 13	AT2G20560.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	Medtr4g108870.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.5969.1.S1_at	B	B1S	POPTR_0013s04000	POPTR_0013s04000 (0:284)	NA	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.5976.1.S1_at	B	B1S	POPTR_0018s01890	POPTR_0018s01890 (0:251)	NA	NA	P14009	14 kDa proline-rich protein DC2.15	AT2G45180.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46820.1	"LTPL121 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr1g014100.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5979.1.S1_at	B	B1S	POPTR_0001s12230	POPTR_0001s12230 (6:139)	NA	NA	Q9SCY2	"FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplastic"	AT5G45680.1	FK506-binding protein 13 	LOC_Os06g45340.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g140460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.5989.1.S1_at	B	B1S	POPTR_0010s06670	POPTR_0010s06670 (3:239)	NA	NA	O32107	Uncharacterized membrane protein yuiD	AT1G67600.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os01g67560.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5991.1.S1_at	B	B1S	POPTR_0004s05510	POPTR_0004s05510 (6:423)	NA	NA	P12412	Vignain	AT5G45890.1	senescence-associated gene 12 	LOC_Os04g13090.1	"vignain precursor, putative"	Medtr5g022460.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6.1.S1_at	B	B1S	POPTR_0016s14220	POPTR_0016s14220 (1:670)	NA	NA	NA	NA	AT3G51610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os05g07640.1	expressed protein	Medtr7g080110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6001.1.S1_s_at	B	B1S	POPTR_0013s13480	POPTR_0013s13480 (1:907)	NA	NA	O24058	Metallothionein-like protein type 2	AT3G09390.1	metallothionein 2A 	NA	NA	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
Ptp.6003.1.S1_at	B	B1S	POPTR_0010s14190	POPTR_0010s14190 (0:439)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6010.2.S1_at	B	B1S	POPTR_0016s03740	POPTR_0016s03740 (1:113)	NA	NA	P94111	Strictosidine synthase 1	AT3G57030.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g53950.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
Ptp.6017.2.S1_at	B	B1S	POPTR_0001s21140	POPTR_0001s21140 (1:183)	NA	NA	NA	NA	AT3G15840.5	post-illumination chlorophyll fluorescence increase 	LOC_Os03g38950.1	"chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed"	Medtr4g005610.1	"PIFI, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6019.2.S1_at	B	B1S	POPTR_0002s21290	POPTR_0002s21290 (8:31)	NA	NA	Q6Z1D5	Autophagy-related protein 8C	AT2G05630.1	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6028.1.S1_at	B	B1S	POPTR_0008s18990	POPTR_0008s18990 (7:256)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6035.1.S1_at	B	B1S	POPTR_0010s12050	POPTR_0010s12050 (6:125)	NA	NA	NA	NA	AT1G70760.1	inorganic carbon transport protein-related 	LOC_Os05g28090.1	expressed protein	NA	NA	GO:0055114|oxidation reduction	"GO:0016655|""oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor"""	NA
Ptp.6036.1.S1_at	B	B1S	POPTR_0001s34960	POPTR_0001s34960 (0:27)	NA	NA	O22609	"Protease Do-like 1, chloroplastic"	AT3G27925.1	DegP protease 1 	LOC_Os05g49380.2	"OsDegp9 - Putative Deg protease homologue, expressed"	Medtr6g006560.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.6036.2.A1_at	B	B1S	POPTR_0001s34960	POPTR_0001s34960 (2:327)	NA	NA	O22609	"Protease Do-like 1, chloroplastic"	AT3G27925.1	DegP protease 1 	LOC_Os05g49380.2	"OsDegp9 - Putative Deg protease homologue, expressed"	Medtr6g006560.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.6041.1.S1_at	B	B1S	POPTR_0018s07170	POPTR_0018s07170 (8:340)	scaffold_18:7343642-7347313(-) (9)	NA	Q9SKI2	Vacuolar protein sorting-associated protein 2 homolog 1	AT2G06530.1	SNF7 family protein 	LOC_Os07g13270.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	GO:0015031|protein transport	NA	NA
Ptp.6044.1.S1_a_at	B	B1S	POPTR_0013s01690	POPTR_0013s01690 (1:31)	NA	NA	NA	NA	AT3G05550.1	Hypoxia-responsive family protein 	LOC_Os02g37930.1	"hypoxia-responsive family protein, putative, expressed"	Medtr1g099920.1	Hypoxia induced protein conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6045.2.A1_at	B	B1S	POPTR_0005s23150	POPTR_0005s23150 (8:346)	scaffold_5:21958561-21958987(-) (11)	NA	O31743	Ribosome biogenesis GTPase A	AT4G02790.1	GTP-binding family protein 	LOC_Os05g35540.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr7g108550.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6045.3.S1_s_at	B	B1S	POPTR_0009s13750	POPTR_0009s13750 (8:250)	NA	NA	O22468	WD-40 repeat-containing protein MSI2	AT2G16780.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.605.1.A1_at	B	B1S	POPTR_0018s07020	POPTR_0018s07020 (8:481)	scaffold_18:7158356-7158859(-) (9)	NA	Q87Q52	Cytidine deaminase	AT2G19570.1	cytidine deaminase 1 	LOC_Os01g51540.1	"cytidine/deoxycytidylate deaminase, putative, expressed"	Medtr4g160920.1	"CMP/dCMP deaminase, zinc-binding "	NA	GO:0004126|cytidine deaminase activity||GO:0008270|zinc ion binding	NA
Ptp.6054.1.S1_x_at	B	B1S	POPTR_0018s03110	POPTR_0018s03110 (0:165)	NA	NA	Q940T9	Zinc finger protein CONSTANS-LIKE 4	AT5G24930.1	CONSTANS-like 4 	LOC_Os04g42020.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr1g016230.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6062.1.S1_at	B	B1S	POPTR_0010s15930	POPTR_0010s15930 (8:793)	NA	NA	Q8L6H7	"Beta-glucosidase-like SFR2, chloroplastic"	AT3G06510.1	Glycosyl hydrolase superfamily protein 	LOC_Os11g45710.7	"Os11bglu36  SFR2 homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6069.1.S1_at	B	B1S	POPTR_0014s09120	POPTR_0014s09120 (6:255)	NA	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.607.1.S1_at	B	B1S	POPTR_0011s03360	POPTR_0011s03360 (2:140)	scaffold_11:3503598-3503743(-) (9)	NA	Q9FH37	Transcription factor ILR3	AT5G54680.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g04390.2	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr4g111220.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.607.2.S1_a_at	B	B1S	POPTR_0011s03360	POPTR_0011s03360 (4:1912)	NA	NA	Q9FH37	Transcription factor ILR3	AT5G54680.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g04390.2	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr4g111220.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.6082.1.S1_at	B	B1S	POPTR_0012s03910	POPTR_0012s03910 (8:874)	NA	NA	Q9SCX8	Purple acid phosphatase 17	AT3G17790.1	purple acid phosphatase 17 	LOC_Os03g13540.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr4g154540.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
Ptp.6087.1.S1_at	B	B1S	POPTR_0016s13260	POPTR_0016s13260 (6:187)	NA	NA	P25699	"Ferritin, chloroplastic"	AT5G01600.1	ferretin 1 	LOC_Os12g01530.2	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr4g011930.1	Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
Ptp.6090.1.S1_at	B	B1S	POPTR_0018s08790	POPTR_0018s08790 (8:540)	NA	NA	Q5N800	"Probable chlorophyll(ide) b reductase NYC1, chloroplastic"	AT4G13250.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g12710.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g099660.2	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.6092.1.S1_at	B	B1S	POPTR_0005s05000	POPTR_0005s05000 (6:386)	NA	NA	O23733	Cysteine synthase	AT3G04940.1	cysteine synthase D1 	LOC_Os03g53650.3	"cysteine synthase, putative, expressed"	Medtr1g096600.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.610.1.S1_at	B	B1S	POPTR_0001s07920	POPTR_0001s07920 (7:356)	scaffold_1:6000258-6000697(-) (11)	NA	Q94AZ4	Probable calcium-binding protein CML13	AT1G12310.1	Calcium-binding EF-hand family protein 	LOC_Os08g02420.1	"OsCML7 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g012030.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6101.1.S1_at	B	B2S	POPTR_0002s08770	POPTR_0002s08770 (1:301)//POPTR_0002s08780 (0:71)	NA	NA	Q9CA23	Ubiquitin-fold modifier 1	AT1G77710.1	"CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). "	LOC_Os01g73140.1	"ubiquitin-fold modifier 1 precursor, putative, expressed"	Medtr5g065330.1	Protein of unknown function UPF0185 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6104.1.S1_at	B	B1S	POPTR_0003s02520	POPTR_0003s02520 (2:478)	NA	NA	Q54VT8	Probable glycerol kinase	AT1G80460.1	Actin-like ATPase superfamily protein 	LOC_Os04g55410.1	"FGGY family of carbohydrate kinases, putative, expressed"	Medtr4g005800.1	Glycerol kinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
Ptp.6115.1.S1_at	B	B1S	POPTR_0013s09480	POPTR_0013s09480 (8:539)	NA	NA	NA	NA	AT5G05220.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g076630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6116.1.S1_at	B	B3S	POPTR_0002s02690	POPTR_0002s02690 (2:495)//POPTR_0002s02700 (2:467)//POPTR_0002s02770 (2:328)	NA	NA	O65782	Cytochrome P450 83B1	AT4G31500.1	"cytochrome P450, family 83, subfamily B, polypeptide 1 "	LOC_Os12g16720.1	"cytochrome P450 71A1, putative, expressed"	Medtr5g081180.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6121.1.S1_at	B	B1S	POPTR_0005s24830	POPTR_0005s24830 (6:102)	NA	NA	Q3EDJ0	ABC transporter I family member 19	AT1G03905.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g56550.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g102810.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.6123.1.S1_at	B	B1S	POPTR_0005s16430	POPTR_0005s16430 (5:316)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6126.1.S1_at	B	B1S	POPTR_0014s05610	POPTR_0014s05610 (6:2354)	NA	NA	Q63850	Nuclear pore glycoprotein p62	AT2G45000.1	structural constituent of nuclear pore 	LOC_Os01g63780.1	"nsp1-like C-terminal region family protein, expressed"	Medtr7g040850.1	hypothetical protein 	NA	GO:0017056|structural constituent of nuclear pore	GO:0005643|nuclear pore
Ptp.6129.1.S1_at	B	B1S	POPTR_0010s13770	POPTR_0010s13770 (7:558)	NA	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT5G16080.1	carboxyesterase 17 	LOC_Os03g15270.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.6131.1.S1_at	B	B1S	POPTR_0001s07860	POPTR_0001s07860 (0:289)	NA	NA	Q42798	Cytochrome P450 93A1	AT4G12300.1	"cytochrome P450, family 706, subfamily A, polypeptide 4 "	LOC_Os01g50490.1	"cytochrome P450, putative, expressed"	Medtr3g169570.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6137.1.S1_at	B	B1S	POPTR_0014s02890	POPTR_0014s02890 (0:338)	NA	NA	Q9NBK5	Serine/threonine-protein kinase tricorner	AT5G09890.1	Protein kinase family protein 	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g024310.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.6139.1.S1_at	B	B1S	POPTR_0004s01730	POPTR_0004s01730 (8:353)	NA	NA	Q50EK1	Cytochrome P450 716B1	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33620.1	"cytochrome P450 domain containing protein, expressed"	Medtr5g099470.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6142.1.S1_at	B	B1S	POPTR_0003s09690	POPTR_0003s09690 (7:106)	NA	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr5g028110.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
Ptp.6144.1.S1_at	B	B2S	POPTR_0006s14930	POPTR_0006s14930 (8:837)//POPTR_0006s14920 (1:468)	scaffold_6:12405308-12412552(-) (9)	NA	Q38932	"Lycopene epsilon cyclase, chloroplastic"	AT5G57030.1	Lycopene beta/epsilon cyclase protein 	LOC_Os01g39960.1	"lycopene epsilon cyclase, chloroplast precursor, putative, expressed"	Medtr2g046700.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
Ptp.6145.1.S1_at	B	B10S	POPTR_0047s00250	POPTR_0005s01640 (4:352)//POPTR_0005s01310 (4:352)//POPTR_0005s01500 (5:352)//POPTR_0047s00250 (7:352)//POPTR_0005s01620 (5:352)//POPTR_0005s01610 (3:352)//POPTR_0005s01230 (3:233)//POPTR_0056s00220 (3:233)//POPTR_0005s01000 (4:233)//POPTR_0005s01630 (2:228)	NA	NA	Q9ZWC8	Serine/threonine-protein kinase BRI1-like 1	AT1G74170.1	receptor like protein 13 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
Ptp.6148.1.S1_at	B	B1S	POPTR_0013s08510	POPTR_0013s08510 (8:645)	NA	NA	Q9FFD0	Putative auxin efflux carrier component 8	AT5G16530.1	Auxin efflux carrier family protein 	LOC_Os01g69070.1	"auxin efflux carrier component, putative, expressed"	Medtr7g089430.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.6151.1.A1_at	B	B1S	POPTR_0012s05430	POPTR_0012s05430 (6:375)	NA	NA	NA	NA	AT5G23040.1	Protein of unknown function (DUF3353) 	LOC_Os09g21250.1	expressed protein	Medtr8g115580.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6152.1.S1_at	B	B1S	POPTR_0016s12920	POPTR_0016s12920 (0:354)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6160.1.S1_at	B	B1S	POPTR_0008s06270	POPTR_0008s06270 (8:568)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os07g30620.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g033170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6162.1.S1_at	B	B1S	POPTR_0019s05860	POPTR_0019s05860 (1:517)	NA	NA	NA	NA	AT5G16680.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os12g24540.1	"PHD-finger family protein, expressed"	Medtr5g007340.1	"Zinc finger, FYVE/PHD-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6163.2.S1_s_at	B	B1S	POPTR_0006s08420	POPTR_0006s08420 (8:31)	NA	NA	Q9M354	Probable ADP-ribosylation factor GTPase-activating protein AGD6	AT3G53710.2	ARF-GAP domain 6 	LOC_Os03g17020.2	"GTPase-activating protein, putative, expressed"	Medtr7g118270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.6167.1.S1_at	B	B1S	POPTR_0002s14430	POPTR_0002s14430 (6:642)	NA	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.6168.1.S1_at	B	B1S	POPTR_0002s03760	POPTR_0002s03760 (6:506)	NA	NA	Q3EDJ0	ABC transporter I family member 19	AT1G03905.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g56550.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g102810.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.6171.1.S1_at	B	B1S	POPTR_0008s22890	POPTR_0008s22890 (8:425)	NA	NA	Q9LIF1	Monothiol glutaredoxin-S10	AT3G21460.1	Glutaredoxin family protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr2g025070.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.6176.1.S1_at	B	B1S	POPTR_0003s17110	POPTR_0003s17110 (7:384)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6177.1.S1_at	B	B1S	POPTR_0009s10940	POPTR_0009s10940 (5:163)	scaffold_9:9238523-9238956(-) (9)	NA	Q9C566	Peptidyl-prolyl cis-trans isomerase CYP40	AT2G15790.1	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase 	LOC_Os02g52360.1	"peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed"	Medtr4g129080.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.6178.1.S1_a_at	B	B1S	POPTR_0002s00360	POPTR_0002s00360 (8:62)	NA	NA	P0AF48	UPF0047 protein yjbQ	AT1G21065.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). 	LOC_Os02g09460.1	"GA16396-PA, putative, expressed"	Medtr4g114450.1	Protein of unknown function UPF0047 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6180.2.A1_s_at	B	B1S	POPTR_0001s10880	POPTR_0001s10880 (8:32)	NA	NA	P37707	B2 protein	AT5G42050.1	DCD (Development and Cell Death) domain protein 	LOC_Os01g36950.2	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6181.1.S1_at	B	B1S	POPTR_0004s08330	POPTR_0004s08330 (0:4)	scaffold_4:6848835-6849068(+) (11)	NA	O04086	Probable receptor-like protein kinase At1g11050	AT1G11050.1	Protein kinase superfamily protein 	LOC_Os05g34950.1	"cysteine-rich receptor-like protein kinase 6 precursor, putative, expressed"	Medtr2g006980.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6184.1.S1_at	B	B1S	POPTR_0002s10110	POPTR_0002s10110 (8:305)	NA	NA	Q9M0S5	"Isoamylase 3, chloroplastic"	AT4G09020.1	isoamylase 3 	LOC_Os09g29404.3	"glycogen operon protein glgX, putative, expressed"	Medtr3g150300.1	"Alpha amylase, catalytic region; Pullulanase, type I; ; ; "	GO:0005975|carbohydrate metabolic process	"GO:0043169|cation binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6188.2.S1_at	B	B1S	POPTR_0006s23310	POPTR_0006s23310 (6:272)	NA	NA	Q41365	26S protease regulatory subunit 7	AT1G53750.1	regulatory particle triple-A 1A 	LOC_Os06g09290.1	"26S protease regulatory subunit 7, putative, expressed"	Medtr1g121600.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.6189.1.S1_at	B	B2S	POPTR_0015s08510	POPTR_0015s08510 (2:39)//POPTR_0559s00200 (2:39)	NA	NA	NA	NA	AT5G62865.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). 	LOC_Os02g50940.1	"NHL repeat-containing protein, putative, expressed"	Medtr8g125480.1	"IS10 transposase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6190.1.S1_at	B	B1S	POPTR_0004s09400	POPTR_0004s09400 (8:2493)	NA	NA	Q54SA5	WD repeat-containing protein 55 homolog	AT2G34260.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g46620.1	"WD repeat-containing protein 55, putative, expressed"	Medtr8g115860.1	Inorganic pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6206.1.S1_at	B	B1S	POPTR_0005s15940	POPTR_0005s15940 (7:464)	NA	NA	NA	NA	NA	NA	LOC_Os04g37750.1	expressed protein	Medtr5g065200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6211.1.A1_at	B	B1S	POPTR_0001s33330	POPTR_0001s33330 (3:145)	NA	NA	Q9CSU0	Regulation of nuclear pre-mRNA domain-containing protein 1B	AT3G26990.1	ENTH/VHS family protein 	LOC_Os11g03570.1	"protein of unknown function, DUF618 domain containing protein, expressed"	Medtr7g027310.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6218.1.S1_at	B	B1S	POPTR_0003s10140	POPTR_0003s10140 (2:815)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6224.1.S1_at	B	B1S	POPTR_0003s13950	POPTR_0003s13950 (7:391)	NA	NA	Q9T0A0	Long chain acyl-CoA synthetase 4	AT4G23850.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g46750.1	"AMP-binding enzyme, putative, expressed"	Medtr5g009390.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6225.1.S1_at	B	B5S	POPTR_0006s02330	POPTR_0006s02370 (6:528)//POPTR_0006s02310 (5:527)//POPTR_0006s02380 (5:523)//POPTR_0006s02330 (7:457)//POPTR_0006s02350 (6:457)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6228.1.S1_at	B	B1S	POPTR_0003s09970	POPTR_0003s09970 (8:508)	NA	NA	Q9ZQ99	Cytokinin-O-glucosyltransferase 1	AT2G36780.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g47720.1	"cis-zeatin O-glucosyltransferase, putative, expressed"	Medtr5g027420.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6231.1.S1_at	B	B1S	POPTR_0005s24390	POPTR_0005s24390 (8:617)	NA	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT2G31280.1	conserved peptide upstream open reading frame 7 	LOC_Os01g64560.2	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6237.1.S1_at	B	B1S	POPTR_0011s03990	POPTR_0011s03990 (3:456)	NA	NA	NA	NA	AT1G11380.1	PLAC8 family protein 	LOC_Os07g36820.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g124650.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6239.1.S1_at	B	B1S	POPTR_0013s02310	POPTR_0013s02310 (5:450)	NA	NA	Q06327	Lipoxygenase 1	AT1G55020.1	lipoxygenase 1 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr7g139190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.6243.1.S1_at	B	B1S	POPTR_0006s11400	POPTR_0006s11400 (6:466)	NA	NA	P35493	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase"	AT3G08590.2	"Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "	LOC_Os01g60190.2	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed"	Medtr7g081000.1	"Alkaline phosphatase; Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "	GO:0044282|small molecule catabolic process||GO:0044275|cellular carbohydrate catabolic process||GO:0006007|glucose catabolic process||GO:0044281|small molecule metabolic process	GO:0004619|phosphoglycerate mutase activity||GO:0030145|manganese ion binding	GO:0005737|cytoplasm
Ptp.6244.1.S1_at	B	B1S	POPTR_0004s00480	POPTR_0004s00480 (7:553)	NA	NA	Q9ZWQ8	"Plastid-lipid-associated protein, chloroplastic"	AT4G22240.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os09g04790.1	"PAP fibrillin family domain containing protein, expressed"	Medtr2g029130.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
Ptp.6245.1.A1_at	B	B1S	POPTR_0010s02770	POPTR_0010s02770 (1:69)	NA	NA	NA	NA	AT5G18850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6246.2.S1_at	B	B1S	POPTR_0014s12250	POPTR_0014s12250 (0:284)	NA	NA	P32292	Indole-3-acetic acid-induced protein ARG2	AT4G02380.1	senescence-associated gene 21 	NA	NA	NA	NA	GO:0006950|response to stress	NA	NA
Ptp.6248.1.A1_at	B	B1S	POPTR_0004s11540	POPTR_0004s11540 (5:172)	scaffold_4:10302561-10303174(-) (10)	NA	NA	NA	AT4G26190.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g01850.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g071320.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.625.1.S1_at	B	B1S	POPTR_0001s30030	POPTR_0001s30030 (0:95)	NA	NA	Q5ZKQ8	ADP-ribosylation factor-like protein 8A	AT3G49870.1	ADP-ribosylation factor-like A1C 	LOC_Os03g10370.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g015500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6251.1.S1_at	B	B1S	POPTR_0008s00470	POPTR_0008s00470 (6:487)	NA	NA	P29518	"Protein brittle-1, chloroplastic/amyloplastic"	AT3G20240.1	Mitochondrial substrate carrier family protein 	LOC_Os08g40850.1	"mitochondrial carrier protein, putative, expressed"	Medtr1g013520.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6256.1.S1_at	B	B1S	POPTR_0002s06560	POPTR_0002s06560 (4:208)	scaffold_2:4373231-4373565(+) (11)	NA	NA	NA	AT1G34000.1	one-helix protein 2 	LOC_Os01g40710.1	"high light inducible protein, putative, expressed"	Medtr1g124760.1	"one-helix protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6263.1.S1_at	B	B1S	POPTR_0008s12440	POPTR_0008s12440 (4:468)	NA	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G67000.1	Protein kinase superfamily protein 	LOC_Os01g02300.1	"receptor kinase ORK10, putative, expressed"	Medtr1g034770.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6264.1.S1_s_at	B	B1S	POPTR_0004s07140	POPTR_0004s07140 (7:951)	NA	NA	NA	NA	AT1G01490.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g03500.1	"heavy metal-associated domain containing protein, expressed"	Medtr6g061870.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.627.1.S1_s_at	B	B1A	POPTR_0010s20910	POPTR_0010s20910 (5:148)	NA	NA	Q9M2S6	E3 ubiquitin-protein ligase SDIR1	AT3G55530.1	RING/U-box superfamily protein 	LOC_Os03g16570.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g084210.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6270.1.S1_at	B	B1A	POPTR_0003s06280	POPTR_0003s06280 (7:494)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6271.1.S1_at	B	B1S	POPTR_0007s04830	POPTR_0007s04830 (6:541)	NA	NA	NA	NA	AT5G08750.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g59580.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g143830.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6276.1.S1_at	B	B1S	POPTR_0030s00440	POPTR_0030s00440 (8:517)	NA	NA	Q9M081	Protein transport protein Sec24-like At4g32640	AT4G32640.2	Sec23/Sec24 protein transport family protein 	LOC_Os11g29200.1	"protein transport protein, putative, expressed"	AC235094_10.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region AC235094.1 49157-53293 E EGN_Mt090430 200"	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
Ptp.6280.1.S1_at	B	B1S	POPTR_0015s06810	POPTR_0015s06810 (0:420)	NA	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT5G61030.1	glycine-rich RNA-binding protein 3 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g036670.1	"Carbohydrate kinase, PfkB; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6283.1.S1_at	B	B1S	POPTR_0009s15330	POPTR_0009s15330 (8:1522)	scaffold_9:11887288-11888810(-) (9)	NA	P27237	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6285.1.S1_at	B	B1S	POPTR_0001s05640	POPTR_0001s05640 (4:406)	NA	NA	Q9C5J8	"Outer envelope protein of 80 kDa, chloroplastic"	AT5G19620.1	outer envelope protein of 80 kDa 	LOC_Os02g10260.1	"outer membrane protein, OMP85 family protein, expressed"	Medtr2g117630.1	Bacterial surface antigen (D15) 	NA	NA	GO:0019867|outer membrane
Ptp.629.1.S1_at	B	B2S	POPTR_0007s10120	POPTR_0007s10120 (6:1006)//POPTR_0007s10130 (3:427)	scaffold_7:9837502-9845743(-) (10)	NA	Q9NXG6	Transmembrane prolyl 4-hydroxylase	AT4G33910.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g55380.1	"oxidoreductase, putative, expressed"	Medtr8g099290.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6291.1.S1_at	B	B1S	POPTR_0017s13600	POPTR_0017s13600 (7:462)	NA	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G30300.1	O-fucosyltransferase family protein 	LOC_Os05g04190.2	"growth regulator related protein, putative, expressed"	Medtr7g015370.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6297.1.S1_at	B	B1S	POPTR_0002s06080	POPTR_0002s06080 (5:478)	NA	NA	Q9SJG9	Mitogen-activated protein kinase 20	AT2G42880.1	MAP kinase 20 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr3g119710.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6299.2.S1_at	B	B1S	POPTR_0017s00430	POPTR_0017s00430 (3:409)	NA	NA	Q54T05	Serine/threonine-protein kinase rio2	AT3G51270.1	protein serine/threonine kinases;ATP binding;catalytics 	LOC_Os01g66520.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr4g165610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.63.1.A1_at	B	B1S	POPTR_0013s06200	POPTR_0013s06200 (6:323)	NA	NA	Q9LJI2	Cation/calcium exchanger 3	AT5G17860.1	calcium exchanger 7 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr7g103490.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
Ptp.6301.1.S1_at	B	B1S	POPTR_0011s15450	POPTR_0011s15450 (7:363)	NA	NA	Q12955	Ankyrin-3	AT5G14230.1	"CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). "	LOC_Os02g25960.1	"ankyrin repeat family protein, putative, expressed"	Medtr8g142200.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6306.2.A1_at	B	B1S	POPTR_0003s12480	POPTR_0003s12480 (0:215)	NA	NA	Q5RBB3	RNA-binding protein NOB1	AT5G41190.1	"CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g02360.1	expressed protein	Medtr4g149620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6309.1.S1_at	B	B1S	POPTR_0018s14940	POPTR_0018s14940 (8:470)	NA	NA	Q6ZPJ0	Testis-expressed sequence 2 protein	AT1G17820.1	Putative integral membrane protein conserved region (DUF2404) 	LOC_Os02g58110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.632.1.A1_x_at	B	B1S	POPTR_0012s06700	POPTR_0012s06700 (8:503)	scaffold_12:7127383-7135436(+) (11)	NA	Q9SD88	UPF0139 membrane protein At5g07960	AT5G07960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g54980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6335.1.A1_at	B	B1S	POPTR_0014s06280	POPTR_0014s06280 (4:858)	NA	NA	Q9SLN5	Methionine aminopeptidase 1A	AT2G45240.1	methionine aminopeptidase 1A 	LOC_Os10g36470.2	"peptidase, M24 family protein, putative, expressed"	Medtr5g017630.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	GO:0008270|zinc ion binding	NA
Ptp.6338.1.S1_at	B	B1S	POPTR_0006s19070	POPTR_0006s19070 (6:528)	NA	NA	Q6KAE5	Probable E3 ubiquitin-protein ligase XBOS32	AT5G57740.1	XB3 ortholog 2 in Arabidopsis thaliana 	LOC_Os02g54860.2	"ankyrin repeat-rich protein, putative, expressed"	Medtr8g127710.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6341.1.S1_s_at	B	B1S	POPTR_0016s12060	POPTR_0016s12060 (8:1713)	NA	NA	Q921R7	Probable UDP-sugar transporter protein SLC35A5	AT4G35335.1	Nucleotide-sugar transporter family protein 	LOC_Os07g38610.1	"UAA transporter family domain containing protein, expressed"	Medtr5g106860.1	Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
Ptp.6343.1.S1_at	B	B1S	POPTR_0001s22260	POPTR_0001s22260 (5:476)	NA	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G22190.2	IQ-domain 5 	LOC_Os03g44610.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g067020.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6345.1.S1_s_at	B	B2S	POPTR_0016s11950	POPTR_0016s11960 (8:149)//POPTR_0016s11950 (8:149)	NA	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr4g012530.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.635.1.S1_at	B	B1S	POPTR_0012s07610	POPTR_0012s07610 (1:179)	scaffold_12:8512661-8512875(-) (9)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT5G62580.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6354.1.S1_a_at	B	B1S	POPTR_0001s30950	POPTR_0001s30950 (8:108)	NA	NA	P43297	Cysteine proteinase RD21a	AT1G47128.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6354.2.S1_at	B	B1S	POPTR_0001s30950	POPTR_0001s30950 (8:195)	NA	NA	P43297	Cysteine proteinase RD21a	AT1G47128.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6356.2.S1_at	B	B1S	POPTR_0001s12390	POPTR_0001s12390 (6:208)	NA	NA	Q0JPA6	Salt stress root protein RS1	AT4G20260.3	plasma-membrane associated cation-binding protein 1 	LOC_Os02g18410.1	"salt stress root protein RS1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.636.1.S1_s_at	B	B1S	POPTR_0006s01320	POPTR_0006s01320 (7:148)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6363.1.S1_at	B	B1S	POPTR_0001s04270	POPTR_0001s04270 (6:446)	scaffold_1:3375112-3375680(-) (11)	NA	NA	NA	AT4G08810.1	calcium ion binding 	LOC_Os07g43990.1	expressed protein	Medtr4g134130.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6372.2.A1_at	B	B1S	POPTR_0012s07360	POPTR_0012s07360 (8:382)	NA	NA	Q9SSF8	Calcium-dependent protein kinase 30	AT1G74740.1	calcium-dependent protein kinase 30 	LOC_Os01g61590.1	"CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6383.3.A1_at	B	B5S	POPTR_0019s12450	POPTR_0086s00260 (4:132)//POPTR_0019s12450 (7:132)//POPTR_0086s00220 (0:12)//POPTR_0144s00200 (0:12)//POPTR_0104s00220 (0:12)	NA	NA	Q9SEU8	"Thioredoxin M2, chloroplastic"	AT4G03520.1	Thioredoxin superfamily protein 	LOC_Os02g42700.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.6384.3.S1_at	B	B1S	POPTR_0002s12560	POPTR_0002s12560 (6:122)	NA	NA	Q6X7J9	WUSCHEL-related homeobox 4	AT1G46480.1	WUSCHEL related homeobox 4 	LOC_Os04g55590.1	"homeobox domain containing protein, expressed"	Medtr1g024140.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6398.1.A1_at	B	B1S	POPTR_0014s15220	POPTR_0014s15220 (8:1399)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6402.2.S1_at	B	B1S	POPTR_0011s17230	POPTR_0011s17230 (6:1472)	NA	NA	Q9FG77	Probable WRKY transcription factor 2	AT5G56270.1	WRKY DNA-binding protein 2 	LOC_Os08g38990.4	"OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6406.1.S1_at	B	B2S	POPTR_0133s00260	POPTR_0133s00260 (8:298)//POPTR_0003s01480 (5:255)	scaffold_3:1351815-1352113(+) (9)	NA	NA	NA	AT5G64090.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g06860.1	expressed protein	Medtr5g094760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6412.1.S1_at	B	B1S	POPTR_0001s28710	POPTR_0001s28710 (3:212)	NA	NA	C0LGU7	Probable LRR receptor-like serine/threonine-protein kinase At5g45840	AT5G45840.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr3g094640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.6416.1.S1_at	B	B1S	POPTR_0001s46190	POPTR_0001s46190 (0:365)	NA	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6419.1.S1_at	B	B2S	POPTR_0017s01410	POPTR_0017s01410 (8:1464)//POPTR_0004s07320 (0:1056)	NA	NA	P50218	Isocitrate dehydrogenase [NADP]	AT1G65930.1	cytosolic NADP+-dependent isocitrate dehydrogenase 	LOC_Os01g46610.1	"dehydrogenase, putative, expressed"	Medtr5g084930.1	"Isocitrate dehydrogenase NADP-dependent, plant "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.643.1.S1_at	B	B1S	POPTR_0011s06730	POPTR_0011s06730 (8:32)	NA	NA	Q9ATF5	60S ribosomal protein L18a	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6432.1.S1_at	B	B1S	POPTR_0018s11140	POPTR_0018s11140 (7:1519)	NA	NA	Q91VH1	Adiponectin receptor protein 1	AT4G30850.2	heptahelical transmembrane  protein2 	LOC_Os06g44250.1	"haemolysin-III, putative, expressed"	Medtr8g121650.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
Ptp.6441.1.S1_at	B	B1S	POPTR_0004s02910	POPTR_0004s02910 (7:220)	NA	NA	NA	NA	AT1G61667.1	"Protein of unknown function, DUF538 "	LOC_Os07g36410.1	expressed protein	Medtr2g011040.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6443.1.S1_at	B	B1S	POPTR_0005s28410	POPTR_0005s28410 (6:508)	NA	NA	P0AEB5	MscS family inner membrane protein ynaI	AT5G10490.2	MSCS-like 2 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
Ptp.6444.1.S1_at	B	B1S	POPTR_0013s00580	POPTR_0013s00580 (5:1417)	NA	NA	Q91V92	ATP-citrate synthase	AT1G09430.1	ATP-citrate lyase A-3 	LOC_Os11g47330.1	"ATP-grasp domain containing protein, expressed"	Medtr5g035230.1	"ATP-grasp fold, succinyl-CoA synthetase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6449.1.S1_at	B	B1S	POPTR_0001s15250	POPTR_0001s15250 (7:456)	NA	NA	NA	NA	AT5G02890.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g43670.1	"transferase family protein, putative, expressed"	Medtr5g013390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6452.1.S1_s_at	B	B1S	POPTR_0003s10090	POPTR_0003s10090 (8:781)	scaffold_3:11204500-11205281(-) (10)	NA	Q6Z8C8	Cyclin-dependent kinase F-4	AT4G19110.1	Protein kinase superfamily protein 	LOC_Os06g02550.2	"CPuORF21 - conserved peptide uORF-containing transcript, expressed"	Medtr5g027190.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6457.1.S1_s_at	B	B1S	POPTR_0007s08010	POPTR_0007s08010 (8:1064)	scaffold_7:6500040-6501721(-) (11)	NA	Q99J99	3-mercaptopyruvate sulfurtransferase	AT1G79230.1	mercaptopyruvate sulfurtransferase 1 	LOC_Os12g41500.1	"rhodanese-like domain containing protein, putative, expressed"	AC233682_8.1	Thiosulfate sulfurtransferase AC233682.2 24214-17031 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6461.1.A1_at	B	B1S	POPTR_0002s02450	POPTR_0002s02450 (2:186)	NA	NA	Q84WL9	AP-2 complex subunit sigma	AT1G47830.1	SNARE-like superfamily protein 	LOC_Os12g10560.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr1g031130.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.6464.1.S1_at	B	B1S	POPTR_0003s07470	POPTR_0003s07470 (1:348)	NA	NA	P40855	Peroxisomal biogenesis factor 19	AT3G03490.1	peroxin 19-1 	LOC_Os02g44220.1	"peroxisomal biogenesis factor 19, putative, expressed"	Medtr8g105760.1	Pex19 protein 	NA	NA	GO:0005777|peroxisome
Ptp.6471.1.S1_at	B	B1S	POPTR_0013s10240	POPTR_0013s10240 (5:334)	NA	NA	NA	NA	AT1G33800.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6479.1.S1_at	B	B1S	POPTR_0010s09850	POPTR_0010s09850 (5:593)	scaffold_10:10471230-10472076(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g38470.1	expressed protein	Medtr5g006290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.648.1.S1_at	B	B1S	POPTR_0001s41870	POPTR_0001s41870 (7:579)	NA	NA	Q8VYN2	Vesicle-associated protein 4-2	AT4G21450.2	PapD-like superfamily protein 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
Ptp.6480.1.S1_x_at	B	B1S	POPTR_0016s14580	POPTR_0016s14580 (3:104)	scaffold_16:13765799-13766054(-) (11)	NA	Q94F47	Ubiquitin-conjugating enzyme E2 28	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6484.2.S1_at	B	B1S	POPTR_0012s00670	POPTR_0012s00670 (8:253)	NA	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.6489.2.S1_s_at	B	B1S	POPTR_0004s20010	POPTR_0004s20010 (1:1675)	scaffold_4:19668223-19670027(-) (9)	NA	P46270	Cytochrome b-c1 complex subunit 9	AT3G52730.1	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein 	LOC_Os05g33210.2	"cytochrome b-c1 complex subunit 9, putative, expressed"	Medtr7g127350.1	"Ubiquinol-cytochrome C reductase, UQCRXQCR9 like "	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	GO:0005740|mitochondrial envelope
Ptp.6501.1.S1_at	B	B2S	POPTR_0008s06550	POPTR_0008s06550 (5:1021)//POPTR_0008s06540 (0:886)	NA	NA	O24412	Probable 26S proteasome non-ATPase regulatory subunit 7	AT5G05780.1	RP non-ATPase subunit 8A 	LOC_Os04g56646.1	"MEE34, putative, expressed"	Medtr5g089320.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6513.1.S1_at	B	B1S	POPTR_0013s12220	POPTR_0013s12220 (6:137)	NA	NA	Q681Q7	Uncharacterized protein At1g03900	AT3G58600.1	Adaptin ear-binding coat-associated protein 1 NECAP-1 	LOC_Os01g42830.1	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
Ptp.6516.1.S1_at	B	B1S	POPTR_0022s00300	POPTR_0022s00300 (4:398)	NA	NA	NA	NA	AT1G57680.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g66190.2	expressed protein	Medtr2g005140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6517.2.S1_at	B	B1S	POPTR_0005s11330	POPTR_0005s11330 (3:1404)	NA	NA	P27626	Senescence-associated protein DIN1	AT2G17850.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os02g01220.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr8g089600.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6521.1.S1_at	B	B1S	POPTR_0009s16960	POPTR_0009s16960 (8:299)	NA	NA	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os02g13560.4	"transporter family protein, putative, expressed"	Medtr3g164110.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.6523.1.S1_at	B	B1A	POPTR_0004s04790	POPTR_0004s04790 (6:375)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6527.1.S1_at	B	B1S	POPTR_0015s00310	POPTR_0015s00310 (3:267)	NA	NA	P28493	Pathogenesis-related protein 5	AT5G24620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g32280.1	"thaumatin, putative"	Medtr5g077390.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6531.1.S1_at	B	B1S	POPTR_0009s16530	POPTR_0009s16530 (8:81)	NA	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6540.1.S1_at	B	B1S	POPTR_0016s06690	POPTR_0016s06690 (8:216)	NA	NA	NA	NA	AT2G35880.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os11g36340.1	"lymphoid organ expressed yellow head virus receptor protein, putative, expressed"	Medtr3g137120.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6570.1.S1_at	B	B1S	POPTR_0013s11060	POPTR_0013s11060 (7:284)	NA	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6571.1.S1_at	B	B1S	POPTR_0003s08430	POPTR_0003s08430 (1:747)	scaffold_3:9843218-9845486(-) (11)	NA	Q96252	"ATP synthase subunit delta', mitochondrial"	AT5G47030.1	"ATPase, F1 complex, delta/epsilon subunit "	LOC_Os07g31310.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g008620.1	"H+-transporting two-sector ATPase, delta/epsilon subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6572.1.S1_at	B	B1S	POPTR_0006s03490	POPTR_0006s03490 (8:677)	NA	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr7g020920.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.6573.1.S1_at	B	B1S	POPTR_0003s19300	POPTR_0003s19300 (8:374)	NA	NA	Q9C977	"Pentatricopeptide repeat-containing protein At1g80270, mitochondrial"	AT1G80270.3	PENTATRICOPEPTIDE REPEAT 596 	LOC_Os01g17320.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g106790.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6574.1.S1_at	B	B1S	POPTR_0018s07500	POPTR_0018s07500 (5:738)	NA	NA	Q54DU5	von Willebrand factor A domain-containing protein DDB_G0292028	AT1G19110.1	inter-alpha-trypsin inhibitor heavy chain-related 	LOC_Os07g42280.1	"von Willebrand factor type A domain containing protein, expressed"	Medtr2g049710.1	"von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6579.1.A1_at	B	B1A	POPTR_0006s13840	POPTR_0006s13840 (3:444)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.658.1.S1_at	B	B1S	POPTR_0014s15990	POPTR_0014s15990 (5:1999)	NA	NA	A7SLC8	N-acetyltransferase 9-like protein	AT2G04845.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g09860.2	"acetyltransferase, GNAT family, putative, expressed"	Medtr3g106050.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.6584.1.S1_at	B	B1S	POPTR_0009s05500	POPTR_0009s05500 (7:1497)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6588.2.S1_at	B	B1S	POPTR_1177s00200	POPTR_1177s00200 (8:174)	NA	NA	NA	NA	AT5G52740.1	Copper transport protein family 	LOC_Os03g03500.1	"heavy metal-associated domain containing protein, expressed"	Medtr1g126110.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.6589.1.S1_at	B	B1S	POPTR_0014s11080	POPTR_0014s11080 (8:2572)	NA	NA	NA	NA	AT1G02475.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os01g22510.1	"cyclase/dehydrase family protein, expressed"	Medtr1g106070.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.659.1.S1_at	B	B1S	POPTR_0006s02640	POPTR_0006s02640 (4:343)	NA	NA	Q9LTV6	"Peroxisomal 2,4-dienoyl-CoA reductase"	AT3G12800.1	short-chain dehydrogenase-reductase B 	LOC_Os04g52400.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr8g146300.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.6593.1.S1_at	B	B1S	POPTR_0015s10330	POPTR_0015s10330 (8:31)	NA	NA	P25861	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G13440.1	glyceraldehyde-3-phosphate dehydrogenase C2 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.6594.2.A1_at	B	B1A	POPTR_0010s19130	POPTR_0010s19130 (2:42)	scaffold_10:17133362-17134843(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6595.1.S1_s_at	B	B1S	POPTR_0019s14590	POPTR_0019s14590 (8:57)	NA	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.6597.1.S1_at	B	B3S	POPTR_0009s11070	POPTR_0009s11070 (6:529)//POPTR_0009s11040 (5:385)//POPTR_0009s11050 (5:285)	NA	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT3G50440.1	methyl esterase 10 	LOC_Os01g70860.1	"esterase, putative, expressed"	Medtr5g018350.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6599.1.S1_at	B	B1S	POPTR_0005s16270	POPTR_0005s16270 (0:457)	NA	NA	Q6GQJ2	Protein Jade-1	AT1G77800.1	PHD finger family protein 	LOC_Os02g52960.1	"PHD-finger domain containing protein, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6600.1.S1_at	B	B1S	POPTR_0003s05070	POPTR_0003s05070 (4:312)	scaffold_3:6271287-6272018(-) (10)	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT1G52220.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	LOC_Os01g55570.1	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6600.2.S1_at	B	B1S	POPTR_0003s05070	POPTR_0003s05070 (4:49)	NA	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT1G52220.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	LOC_Os01g55570.1	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6603.1.S1_at	B	B1S	POPTR_0008s13020	POPTR_0008s13020 (3:2547)	NA	NA	NA	NA	NA	NA	LOC_Os03g49940.1	"integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6607.1.S1_at	B	B1S	POPTR_0018s11760	POPTR_0018s11760 (0:150)	NA	NA	Q00IB6	RNA polymerase II C-terminal domain phosphatase-like 4	AT5G58003.1	C-terminal domain phosphatase-like 4 	LOC_Os05g32430.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g055870.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
Ptp.6614.1.S1_at	B	B1S	POPTR_0006s22330	POPTR_0006s22330 (4:445)	NA	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g59610.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.6615.1.S1_at	B	B1S	POPTR_0009s09490	POPTR_0009s09490 (8:500)	NA	NA	A4FVI0	Zinc finger SWIM domain-containing protein 7	AT4G33925.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g40310.1	conserved hypothetical protein	Medtr3g016620.1	"Zinc finger, SWIM-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6630.1.S1_at	B	B1S	POPTR_0002s02820	POPTR_0002s02820 (6:2171)	NA	NA	NA	NA	AT5G42520.1	basic pentacysteine 6 	LOC_Os06g04010.2	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6635.1.S1_at	B	B1S	POPTR_0010s23770	POPTR_0010s23770 (2:152)	NA	NA	Q1S9I9	Probable histone H2B.1	AT3G45980.1	Histone superfamily protein 	LOC_Os08g38300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6639.1.S1_at	B	B1S	POPTR_0001s44530	POPTR_0001s44530 (8:883)	NA	NA	NA	NA	AT3G21710.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g097230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6646.1.S1_at	B	B1S	POPTR_0011s13890	POPTR_0011s13890 (5:1084)	NA	NA	Q9C6I6	"Electron transfer flavoprotein subunit alpha, mitochondrial"	AT1G50940.1	electron transfer flavoprotein alpha 	LOC_Os03g61920.1	"electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g110780.1	"Electron transfer flavoprotein, alpha subunit; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6648.1.S1_at	B	B2S	POPTR_0006s24290	POPTR_0006s24300 (0:489)//POPTR_0006s24290 (0:415)	NA	NA	NA	NA	AT4G33050.3	calmodulin-binding family protein 	LOC_Os01g38980.2	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6649.1.S1_at	B	B1S	POPTR_0006s06090	POPTR_0006s06090 (3:407)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6649.1.S1_s_at	B	B1S	POPTR_0006s06090	POPTR_0006s06090 (6:499)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.665.2.S1_a_at	B	B1S	POPTR_0018s08290	POPTR_0018s08290 (8:1714)	NA	NA	P40343	Vacuolar protein sorting-associated protein 27	AT2G26210.1	Ankyrin repeat family protein 	LOC_Os07g42640.1	"FYVE zinc finger family protein, expressed"	Medtr8g133500.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6651.1.A1_at	B	B1S	POPTR_0001s10760	POPTR_0001s10760 (3:1330)	NA	NA	P12628	NADP-dependent malic enzyme	AT2G19900.1	NADP-malic enzyme 1 	LOC_Os05g09440.1	"NADP-dependent malic enzyme, chloroplast precursor, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6674.1.S1_at	B	B1S	POPTR_0002s19740	POPTR_0002s19740 (8:377)	NA	NA	Q4V9Y0	Protein fat-free homolog	AT4G02030.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os03g52770.1	expressed protein	Medtr1g106780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6675.1.A1_a_at	B	B2S	POPTR_0013s07030	POPTR_0093s00200 (7:232)//POPTR_0013s07030 (7:226)	scaffold_13:5727946-5731548(-) (11)//scaffold_93:10839-14442(-) (11)	NA	NA	NA	AT5G17610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g12238.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6678.1.S1_at	B	B1S	POPTR_0006s15930	POPTR_0006s15930 (5:453)	NA	NA	Q93VG8	UPF0326 protein At4g17486	AT4G17486.1	PPPDE putative thiol peptidase family protein 	LOC_Os06g36490.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr8g119510.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6681.1.S1_at	B	B1S	POPTR_0003s02940	POPTR_0003s02940 (6:820)	NA	NA	Q6DBV4	Probable phosphatase phospho1	AT1G17710.1	Pyridoxal phosphate phosphatase-related protein 	LOC_Os01g52230.1	"phosphoethanolamine/phosphocholine phosphatase, putative, expressed"	AC235757_53.1	"HAD-superfamily subfamily IB hydrolase, hypothetical 1 AC235757.1 226999-229678 E EGN_Mt090430 200"	NA	GO:0016791|phosphatase activity	NA
Ptp.6684.1.S1_at	B	B1S	POPTR_0010s24570	POPTR_0010s24570 (0:457)	NA	NA	NA	NA	AT4G18590.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g14980.2	"RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed"	Medtr7g127630.1	Replication factor A protein 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6698.2.S1_at	B	B1S	POPTR_0010s21740	POPTR_0010s21740 (7:113)	NA	NA	Q9AT35	60S ribosomal protein L23a	AT3G55280.2	ribosomal protein L23AB 	LOC_Os01g24690.1	"60S ribosomal protein L23A, putative, expressed"	Medtr4g079040.1	"Ribosomal protein L23, N-terminal; Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6701.1.A1_at	B	B1S	POPTR_0005s20660	POPTR_0005s20660 (7:1193)	NA	NA	Q0JH50	Gibberellin 20 oxidase 2	AT5G51810.1	gibberellin 20 oxidase 2 	LOC_Os01g66100.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr3g143130.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6703.1.S1_at	B	B1S	POPTR_0009s14870	POPTR_0009s14870 (8:1227)	NA	NA	Q96BP3	Peptidylprolyl isomerase domain and WD repeat-containing protein 1	AT3G44600.1	cyclophilin71 	LOC_Os08g44330.1	"peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed"	AC233070_2.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type AC233070.4 3910-1563 F EGN_Mt090430 200"	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.672.1.A1_at	B	B1S	POPTR_0011s04220	POPTR_0011s04220 (7:277)	NA	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G05020.1	NAD(P)H dehydrogenase B2 	LOC_Os05g26660.1	"NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.6722.1.S1_at	B	B1S	POPTR_0010s01620	POPTR_0010s01620 (8:1369)	NA	NA	Q56S59	Phylloplanin	AT3G16660.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os07g47750.1	"POEI49 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6724.1.S1_s_at	B	B1S	POPTR_0013s03150	POPTR_0013s03150 (7:170)	NA	NA	Q86SZ2	Trafficking protein particle complex subunit 6B	AT3G05000.1	Transport protein particle (TRAPP) component 	LOC_Os09g06970.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr7g140030.1	"Transport protein particle (TRAPP) component, Bet3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6734.1.S1_at	B	B3S	POPTR_0010s14320	POPTR_0010s14330 (3:420)//POPTR_0010s14320 (4:408)//POPTR_0010s14370 (0:152)	NA	NA	NA	NA	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os01g16120.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g039970.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6735.1.S1_a_at	B	B1S	POPTR_0013s12020	POPTR_0013s12020 (6:559)	NA	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os06g36520.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g013140.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.674.1.A1_at	B	B1S	POPTR_0001s32490	POPTR_0001s32490 (4:216)	NA	NA	Q9ZTS1	Probable methionyl-tRNA synthetase	AT4G13780.1	"methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative "	LOC_Os06g31210.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding||GO:0000049|tRNA binding	GO:0005737|cytoplasm
Ptp.6749.1.S1_at	B	B3S	POPTR_0005s23580	POPTR_0005s23590 (1:645)//POPTR_0005s23580 (2:518)//POPTR_0284s00200 (2:474)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.676.1.A1_at	B	B1S	POPTR_0016s12520	POPTR_0016s12520 (5:161)	NA	NA	Q9WU70	Syntaxin-binding protein 5	AT5G05570.2	transducin family protein / WD-40 repeat family protein 	LOC_Os07g49300.1	expressed protein	Medtr5g090270.1	Synaptobrevin; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6760.1.S1_at	B	B1S	POPTR_0017s01050	POPTR_0017s01050 (1:38)	NA	NA	Q32PL8	Coiled-coil domain-containing protein 111 homolog	AT5G52800.3	DNA primases 	LOC_Os07g28470.2	"coiled-coil domain-containing protein 111, putative, expressed"	Medtr6g062610.1	"DNA primase, small subunit; Herpesviridae UL52/UL70 DNA primase "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003896|DNA primase activity	NA
Ptp.6773.2.S1_s_at	B	B1S	POPTR_0010s12090	POPTR_0010s12090 (8:100)	NA	NA	NA	NA	AT1G70780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g21925.1	expressed protein	Medtr1g034970.1	"Senescence-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6779.1.S1_s_at	B	B1S	POPTR_0004s22040	POPTR_0004s22040 (3:638)	scaffold_4:20978171-20980626(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6779.2.S1_at	B	B1S	POPTR_0004s22040	POPTR_0004s22040 (7:366)	scaffold_4:20979855-20980354(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6781.1.S1_at	B	B1S	POPTR_0014s12260	POPTR_0014s12260 (2:226)	NA	NA	P09012	U1 small nuclear ribonucleoprotein A	AT2G47580.1	spliceosomal protein U1A 	LOC_Os05g06280.1	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr5g082430.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6783.1.S1_at	B	B1S	POPTR_0008s19510	POPTR_0008s19510 (6:1125)	scaffold_8:13445828-13447138(+) (10)	NA	Q0JXE7	Transcription factor BPE	AT1G59640.1	BIG PETAL P 	LOC_Os07g09590.1	"bHLH transcription factor, putative"	Medtr8g074580.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.6785.1.A1_at	B	B1S	POPTR_0010s11040	POPTR_0010s11040 (4:1822)	scaffold_10:11420053-11422175(-) (11)//scaffold_1646:937-1293(+) (9)	NA	Q38884	Eukaryotic translation initiation factor 3 subunit I	AT2G46290.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g21660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g104760.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.679.1.S1_at	B	B1S	POPTR_0008s23200	POPTR_0008s23200 (6:299)	NA	NA	Q9LRZ3	Pumilio homolog 24	AT3G16810.1	pumilio 24 	LOC_Os03g61560.1	expressed protein	Medtr1g120450.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
Ptp.6790.1.S1_at	B	B1S	POPTR_0011s07070	POPTR_0011s07070 (6:900)	NA	NA	NA	NA	AT4G18740.1	Rho termination factor 	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006353|transcription termination	GO:0003715|transcription termination factor activity	NA
Ptp.6791.1.S1_at	B	B1S	POPTR_0003s07300	POPTR_0003s07300 (8:459)	NA	NA	O49432	Polygalacturonase QRT3	AT4G20040.1	Pectin lyase-like superfamily protein 	LOC_Os04g52320.1	"QRT3, putative, expressed"	AC235671_6.1	"Virulence factor, pectin lyase fold AC235671.2 24486-26653 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6794.1.S1_at	B	B1S	POPTR_0001s32990	POPTR_0001s32990 (8:447)	NA	NA	Q9LW31	B3 domain-containing transcription factor FUS3	AT3G26790.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g51610.1	"B3 DNA binding domain containing protein, expressed"	Medtr7g096720.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
Ptp.6799.1.S1_at	B	B1S	POPTR_0001s10320	POPTR_0001s10320 (8:1197)	NA	NA	Q9R0M8	UDP-galactose translocator	AT5G41760.2	Nucleotide-sugar transporter family protein 	LOC_Os06g33210.1	"UAA transporter family domain containing protein, expressed"	Medtr7g143690.1	UDP-galactose transporter; Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
Ptp.6812.1.S1_at	B	B1S	POPTR_0004s03650	POPTR_0004s03650 (4:421)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6814.1.S1_at	B	B1S	POPTR_0011s07030	POPTR_0011s07030 (8:596)	NA	NA	Q7Z5U6	WD repeat-containing protein 53	AT5G45760.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g10790.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g135000.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6815.1.S1_at	B	B1S	POPTR_0010s18760	POPTR_0010s18760 (7:820)	NA	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT3G48480.1	Cysteine proteinases superfamily protein 	LOC_Os11g10780.1	expressed protein	Medtr3g149330.2	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6820.1.S1_at	B	B1S	POPTR_0025s00420	POPTR_0025s00420 (6:360)	NA	NA	Q3E9A0	"Probable anion transporter 6, chloroplastic"	AT5G20380.1	phosphate transporter 4;5 	LOC_Os09g38410.1	"sialin, putative, expressed"	Medtr8g122090.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6822.1.S1_at	B	B1S	POPTR_0005s00220	POPTR_0005s00220 (5:410)	NA	NA	Q8BG09	Transmembrane protein 184B	AT3G05940.1	Protein of unknown function (DUF300) 	LOC_Os03g61210.1	"domain of unknown function domain containing protein, expressed"	Medtr7g134570.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6823.1.S1_at	B	B1S	POPTR_0016s13770	POPTR_0016s13770 (4:656)	NA	NA	P37287	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A	AT3G45100.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g16960.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC235487_3.1	"Glycosyl transferase, group 1; Haem peroxidase, plant/fungal/bacterial AC235487.1 8195-11450 E EGN_Mt090430 200"	GO:0006506|GPI anchor biosynthetic process	NA	NA
Ptp.6824.1.S1_at	B	B1S	POPTR_0010s01830	POPTR_0010s01830 (8:263)	NA	NA	Q8YXY3	Isoleucyl-tRNA synthetase	AT5G49030.3	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os02g53770.1	"tRNA synthetase class I, putative, expressed"	Medtr4g104390.1	"Aminoacyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.683.1.A1_at	B	B1S	POPTR_0014s05900	POPTR_0014s05900 (8:175)	NA	NA	P73548	Phosphatidate cytidylyltransferase	AT2G45150.2	cytidinediphosphate diacylglycerol synthase 4 	LOC_Os02g03460.1	"phosphatidate cytidylyltransferase, putative, expressed"	NA	NA	NA	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	GO:0016020|membrane
Ptp.6832.1.S1_at	B	B1S	POPTR_0001s07360	POPTR_0001s07360 (4:434)	NA	NA	P52835	Flavonol 3-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr8g043870.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
Ptp.6840.1.S1_at	B	B1S	POPTR_0016s12710	POPTR_0016s12710 (6:499)	NA	NA	O49343	Pentatricopeptide repeat-containing protein At2g30780	AT2G30780.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g33760.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g083850.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6842.1.S1_at	B	B1S	POPTR_0010s02070	POPTR_0010s02070 (8:659)	NA	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
Ptp.685.1.S1_at	B	B1S	POPTR_0003s17680	POPTR_0003s17680 (0:275)	NA	NA	NA	NA	AT3G24160.1	putative type 1 membrane protein 	LOC_Os08g45220.1	expressed protein	Medtr2g130050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6851.1.S1_at	B	B1S	POPTR_0007s11390	POPTR_0007s11390 (7:86)	NA	NA	Q9C566	Peptidyl-prolyl cis-trans isomerase CYP40	AT2G15790.1	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase 	LOC_Os06g11320.2	"peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed"	Medtr4g129080.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.6853.1.S1_at	B	B1S	POPTR_0018s00880	POPTR_0018s00880 (8:480)	scaffold_18:832568-833084(+) (11)	NA	NA	NA	AT5G25590.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g32760.1	"BZIP protein, putative, expressed"	Medtr3g132720.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6854.1.A1_s_at	B	B1S	POPTR_0003s11000	POPTR_0003s11000 (8:436)	scaffold_3:11842145-11842785(-) (9)	NA	Q9DBN9	Probable ATP-dependent RNA helicase DDX59	AT3G02065.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g10770.2	"DEAD-box ATP-dependent RNA helicase 41, putative, expressed"	Medtr8g105900.1	"Zinc finger, CCHC-type; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6856.1.S1_at	B	B1S	POPTR_0012s03380	POPTR_0012s03380 (2:94)	NA	NA	Q84W65	"SufE-like protein, chloroplastic"	AT1G55805.1	BolA-like family protein 	LOC_Os03g11990.3	"bolA, putative, expressed"	AC233100_36.1	BolA-like protein; Fe-S metabolism associated SufE AC233100.6 121683-123592 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6858.1.S1_at	B	B1S	POPTR_0004s07720	POPTR_0004s07720 (8:226)	NA	NA	NA	NA	AT5G52530.3	dentin sialophosphoprotein-related 	LOC_Os08g33320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6859.1.A1_at	B	B1S	POPTR_0018s02200	POPTR_0018s02200 (3:554)	NA	NA	Q640K1	Neurochondrin	AT4G32050.1	neurochondrin family protein 	LOC_Os02g55530.1	"neurochondrin family protein, putative, expressed"	Medtr3g137890.1	Neurochondrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.686.1.S1_at	B	B1S	POPTR_0009s09620	POPTR_0009s09620 (8:1357)	NA	NA	Q54MI6	TIP41-like protein	AT4G34270.1	TIP41-like family protein 	LOC_Os03g55270.1	"TIP41, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6860.1.S1_at	B	B1S	POPTR_0003s09540	POPTR_0003s09540 (3:900)	NA	NA	Q9ZWQ7	Defender against cell death 1	AT1G32210.1	Defender against death (DAD family) protein 	LOC_Os04g32550.1	"defender against cell death 1, putative, expressed"	Medtr3g026150.1	Defender against death DAD protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6873.1.S1_at	B	B1S	POPTR_0018s01810	POPTR_0018s01810 (7:2158)	NA	NA	NA	NA	AT4G35530.1	phosphatidylinositolglycan-related 	LOC_Os05g07260.2	"phosphatidylinositolglycan-related, putative, expressed"	Medtr7g005890.1	phosphatidylinositolglycan-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6880.2.S1_at	B	B1S	POPTR_0004s13455	POPTR_0004s13455 (4:619)	NA	NA	P64956	Uncharacterized protein Mb2253c	AT3G01410.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g08050.1	"retrotransposon protein, putative, unclassified"	Medtr2g120570.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	GO:0016234|inclusion body
Ptp.6886.1.S1_at	B	B1A	POPTR_0010s24090	POPTR_0010s24090 (2:238)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.689.1.A1_at	B	B1S	POPTR_0019s08600	POPTR_0019s08600 (1:134)	NA	NA	Q9SG96	RING-H2 finger protein ATL72	AT3G10910.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr7g080330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6891.1.S1_at	B	B1S	POPTR_0005s07450	POPTR_0005s07450 (8:228)	scaffold_5:5089999-5090321(-) (9)	NA	P29976	"Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic"	AT4G39980.1	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 	LOC_Os03g27230.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003849|3-deoxy-7-phosphoheptulonate synthase activity	NA
Ptp.6893.3.A1_at	B	B1S	POPTR_0005s24300	POPTR_0005s24300 (3:51)	scaffold_5:22899353-22899435(-) (9)	NA	Q9M2J9	Bet1-like SNARE 1-1	AT3G58170.1	BET1P/SFT1P-like protein 14A 	LOC_Os02g57510.2	"SNARE domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.69.1.S1_at	B	B1S	POPTR_0001s26170	POPTR_0001s26170 (6:64)	NA	NA	Q99J36	THUMP domain-containing protein 1	AT5G12410.1	THUMP domain-containing protein 	LOC_Os11g36060.1	"THUMP domain-containing protein, putative, expressed"	Medtr5g009030.1	THUMP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6900.1.S1_at	B	B1S	POPTR_0001s06750	POPTR_0001s06750 (8:267)	scaffold_1:5182084-5182358(+) (10)	NA	Q0WVD6	Probable protein arginine N-methyltransferase 3	AT3G12270.1	protein arginine methyltransferase 3 	LOC_Os07g44640.1	"ZOS7-13 - C2H2 zinc finger protein, expressed"	Medtr3g005500.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.6903.1.S1_at	B	B1S	POPTR_0008s18890	POPTR_0008s18890 (8:1082)	NA	NA	NA	NA	AT1G13030.1	sphere organelles protein-related 	LOC_Os12g19040.1	expressed protein	Medtr3g102490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6908.1.S1_at	B	B1S	POPTR_0012s10370	POPTR_0012s10370 (8:760)	NA	NA	Q49WS9	Uncharacterized oxidoreductase SSP1627	AT3G47350.1	hydroxysteroid dehydrogenase 2 	LOC_Os04g32070.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.6912.2.A1_at	B	B2A	POPTR_0013s07800	POPTR_0013s07800 (8:47)//POPTR_0013s07840 (4:43)	NA	NA	Q07469	Bark storage protein A	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
Ptp.6914.1.A1_at	B	B1A	POPTR_0012s12960	POPTR_0012s12960 (6:115)	NA	NA	Q5F389	WW domain-containing oxidoreductase	AT4G23420.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.6916.1.S1_at	B	B3S	POPTR_0011s03110	POPTR_0011s03110 (2:817)//POPTR_0306s00210 (1:739)//POPTR_0679s00220 (0:695)	NA	NA	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.6922.1.S1_at	B	B1S	POPTR_0008s23110	POPTR_0008s23110 (0:239)	NA	NA	O50001	Major allergen Pru ar 1	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.6924.1.S1_at	B	B1S	POPTR_0007s14000	POPTR_0007s14000 (4:358)	NA	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6936.1.S1_at	B	B1S	POPTR_0015s04200	POPTR_0015s04200 (0:129)	NA	NA	P32110	Probable glutathione S-transferase	AT2G29460.1	glutathione S-transferase tau 4 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr4g135740.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6955.1.S1_at	B	B1S	POPTR_0003s18410	POPTR_0003s18410 (0:247)	NA	NA	Q9LMT9	Putative wall-associated receptor kinase-like 13	AT1G17910.1	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_3.1	Tyrosine protein kinase AC147501.9 8841-5950 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6960.1.S1_at	B	B1S	POPTR_0014s16080	POPTR_0014s16080 (6:1247)	NA	NA	NA	NA	AT2G04790.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g37600.1	expressed protein	Medtr5g105660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6970.3.S1_at	B	B1S	POPTR_0009s11920	POPTR_0009s11920 (4:117)	NA	NA	Q03878	Glycine-rich RNA-binding protein	AT2G21660.2	"cold, circadian rhythm, and rna binding 2 "	LOC_Os12g43600.1	"RNA recognition motif containing protein, expressed"	Medtr4g095740.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.6972.1.S1_at	B	B1S	POPTR_0016s13630	POPTR_0016s13630 (8:450)	NA	NA	Q9I9R3	Solute carrier family 40 member 1	AT5G03570.2	iron regulated 2 	LOC_Os06g36450.1	"ferroportin1 domain containing protein, expressed"	NA	NA	GO:0006826|iron ion transport	GO:0005381|iron ion transmembrane transporter activity	GO:0016021|integral to membrane
Ptp.6979.1.S1_at	B	B1S	POPTR_0002s01290	POPTR_0002s01290 (6:537)	NA	NA	NA	NA	AT1G76240.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os06g50980.1	conserved hypothetical protein	Medtr5g023250.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6980.1.S1_at	B	B1S	POPTR_0001s44040	POPTR_0001s44040 (7:703)	NA	NA	Q9FIU7	Putative beta-glucosidase 41	AT5G54570.1	beta glucosidase 41 	LOC_Os06g46940.2	"Os6bglu25 - beta-glucosidase homologue, similar to Os3bglu6, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6982.2.A1_at	B	B1A	POPTR_0016s00920	POPTR_0016s00920 (3:560)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6989.1.S1_at	B	B1S	POPTR_0005s22620	POPTR_0005s22620 (8:1390)	NA	NA	Q58DV0	Protein pelota homolog	AT4G27650.1	Eukaryotic release factor 1 (eRF1) family protein 	LOC_Os04g56480.1	"pelota, putative, expressed"	Medtr7g124490.1	Probable translation factor pelota 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6990.1.S1_at	B	B1S	POPTR_0007s10440	POPTR_0007s10440 (0:351)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6993.1.S1_at	B	B1S	POPTR_0008s13130	POPTR_0008s13130 (2:115)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6995.1.S1_at	B	B1S	POPTR_0006s00430	POPTR_0006s00430 (0:510)	scaffold_6:191893-192437(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6997.1.S1_at	B	B1S	POPTR_0010s18380	POPTR_0010s18380 (6:217)	NA	NA	NA	NA	AT2G21820.1	unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g46600.1	"seed maturation protein PM41, putative, expressed"	Medtr2g080660.1	"seed maturation protein PM41, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6998.1.S1_at	B	B1S	POPTR_0001s07310	POPTR_0001s07310 (7:356)	NA	NA	Q7TQ20	DnaJ homolog subfamily C member 2	AT3G11450.1	DnaJ domain ;Myb-like DNA-binding domain 	LOC_Os04g30890.1	"MYB family transcription factor, putative, expressed"	Medtr7g132840.1	"Heat shock protein DnaJ, N-terminal; Homeodomain-related; "	NA	GO:0031072|heat shock protein binding	NA
Ptp.7004.1.S1_at	B	B1S	POPTR_0015s13160	POPTR_0015s13160 (8:149)	NA	NA	Q60720	Cytochrome b561	AT4G25570.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os02g42890.1	"cytochrome b561, putative, expressed"	AC235674_2.2	Cytochrome b561 / ferric reductase transmembrane AC235674.1 14925-10160 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
Ptp.7007.1.S1_at	B	B1S	POPTR_0013s01610	POPTR_0013s01610 (4:274)	scaffold_13:911118-911476(+) (11)	NA	NA	NA	AT1G02816.1	"Protein of unknown function, DUF538 "	LOC_Os05g29900.1	expressed protein	Medtr1g108140.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.701.1.A1_at	B	B1S	POPTR_0002s23950	POPTR_0002s23950 (1:6697)	NA	NA	Q4PE39	Protein transport protein SEC23	AT2G21630.1	Sec23/Sec24 protein transport family protein 	LOC_Os08g36994.2	"protein transport protein, putative, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	GO:0030127|COPII vesicle coat
Ptp.7014.1.A1_at	B	B1S	POPTR_0014s06510	POPTR_0014s06510 (5:721)	NA	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT4G12110.1	sterol-4alpha-methyl oxidase 1-1 	LOC_Os10g39810.1	"fatty acid hydroxylase, putative, expressed"	Medtr8g106630.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
Ptp.7021.2.A1_at	B	B1S	POPTR_0006s05560	POPTR_0006s05560 (6:313)	scaffold_6:3931536-3931883(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7028.1.S1_s_at	B	B2S	POPTR_0015s06530	POPTR_0015s06530 (6:3173)//POPTR_0015s06540 (5:390)	scaffold_15:7476500-7480876(+) (11)	NA	Q8W4Y5	ASC1-like protein	AT1G13580.3	LAG1 longevity assurance homolog 3 	LOC_Os02g49590.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
Ptp.7036.1.S1_at	B	B1S	POPTR_0005s04950	POPTR_0005s04950 (8:547)	NA	NA	P09444	Late embryogenesis abundant protein D-34	AT3G22490.1	Seed maturation protein 	LOC_Os03g06360.1	"late embryogenesis abundant protein D-34, putative, expressed"	Medtr1g086190.2	Seed maturation protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7038.1.S1_at	B	B1S	POPTR_0002s12900	POPTR_0002s12900 (8:487)	scaffold_2:9589822-9590371(-) (9)	NA	P73212	Putative dihydroflavonol-4-reductase	AT4G33360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g08624.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr3g147990.1	"Putative dihydroflavonol-4-reductase, "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.7041.1.S1_at	B	B3S	POPTR_0011s12970	POPTR_0011s12970 (8:365)//POPTR_0011s13150 (4:237)//POPTR_0011s13170 (5:237)	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7043.1.S1_at	B	B1S	POPTR_0005s18870	POPTR_0005s18870 (6:278)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr8g099230.1	"seed maturation protein PM21, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7049.1.S1_at	B	B2S	POPTR_0010s25490	POPTR_0010s25490 (7:603)//POPTR_0387s00200 (6:538)	NA	NA	NA	NA	AT1G73120.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: root, cultured cell; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7054.1.S1_at	B	B1S	POPTR_0016s02300	POPTR_0016s02300 (4:642)	NA	NA	A2CES0	Neuferricin	AT4G14965.1	membrane-associated progesterone binding protein 4 	LOC_Os03g10790.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g138500.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.7057.1.S1_at	B	B1S	POPTR_0009s07650	POPTR_0009s07650 (8:192)	NA	NA	O80873	Uncharacterized protein At1g07170/At2g30000	AT2G30000.1	PHF5-like protein 	LOC_Os05g30410.1	"PHF5-like protein domain containing protein, expressed"	Medtr4g024080.1	Protein of unknown function UPF0123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7059.1.S1_at	B	B1S	POPTR_0017s06680	POPTR_0017s06680 (1:45)	NA	NA	NA	NA	AT4G15240.1	Protein of unknown function (DUF604) 	LOC_Os08g04300.1	"fringe-related protein, putative, expressed"	Medtr2g103540.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.706.1.S1_at	B	B1S	POPTR_0017s11590	POPTR_0017s11590 (8:910)	NA	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT1G74690.1	IQ-domain 31 	LOC_Os05g45930.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g112590.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7069.1.S1_at	B	B1S	POPTR_0003s14490	POPTR_0003s14490 (6:470)	NA	NA	O23086	Aluminum-activated malate transporter 10	AT4G00910.1	Aluminium activated malate transporter family protein 	LOC_Os02g45160.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105090.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7073.2.S1_a_at	B	B1S	POPTR_0010s13310	POPTR_0010s13310 (0:520)	NA	NA	Q8LGG8	Universal stress protein A-like protein	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.7073.2.S1_at	B	B1S	POPTR_0010s13310	POPTR_0010s13310 (6:142)	NA	NA	Q8LGG8	Universal stress protein A-like protein	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.7073.3.A1_at	B	B1S	POPTR_0010s13310	POPTR_0010s13310 (0:47)	NA	NA	Q8LGG8	Universal stress protein A-like protein	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.7076.1.S1_at	B	B1S	POPTR_0005s24780	POPTR_0005s24780 (6:531)	NA	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.7084.1.S1_at	B	B1S	POPTR_0009s01230	POPTR_0009s01230 (7:504)	NA	NA	Q8C436	Uncharacterized protein C14orf138 homolog	AT1G08125.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g57330.1	expressed protein	Medtr6g083940.1	"Protein FAM119A, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7085.1.S1_at	B	B1S	POPTR_0016s02050	POPTR_0016s02050 (0:1100)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7087.1.S1_at	B	B1S	POPTR_0017s11030	POPTR_0017s11030 (8:432)	NA	NA	Q9LHD1	ABC transporter B family member 15	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.7089.1.S1_at	B	B1S	POPTR_0010s07970	POPTR_0010s07970 (8:385)	NA	NA	Q8S403	Phosphate transporter PHO1	AT3G23430.1	phosphate 1 	LOC_Os02g56510.1	"phosphate transporter 1, putative, expressed"	Medtr1g090210.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
Ptp.7093.1.A1_at	B	B1S	POPTR_0016s07480	POPTR_0016s07480 (2:559)	NA	NA	Q7FAE1	Momilactone A synthase	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g33240.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7096.1.S1_x_at	B	B1S	POPTR_0008s17500	POPTR_0008s17500 (8:723)	NA	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7104.1.S1_at	B	B1S	POPTR_0010s13590	POPTR_0010s13590 (2:417)	NA	NA	NA	NA	AT1G13360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04010.1	expressed protein	Medtr4g158300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7106.1.S1_at	B	B1S	POPTR_0008s01440	POPTR_0008s01440 (7:541)	NA	NA	NA	NA	AT5G04890.1	HSP20-like chaperones superfamily protein 	LOC_Os03g45340.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr3g008870.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.711.1.S1_at	B	B1S	POPTR_0009s08040	POPTR_0009s08040 (8:1773)	NA	NA	Q01844	RNA-binding protein EWS	AT5G58470.2	TBP-associated factor 15B 	LOC_Os01g07070.4	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g034290.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.7110.1.S1_at	B	B1S	POPTR_0014s16830	POPTR_0014s16830 (7:726)	NA	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G04240.2	RING/U-box superfamily protein 	LOC_Os08g38460.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g106720.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7115.2.S1_at	B	B1S	POPTR_0019s04940	POPTR_0019s04940 (7:450)	NA	NA	Q5ZKY4	Inhibitor of growth protein 4	AT1G54390.3	PHD finger protein-related 	LOC_Os03g53700.1	"PHD-finger domain containing protein, putative, expressed"	Medtr7g100390.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7123.1.A1_s_at	B	B1A	POPTR_0010s05320	POPTR_0010s05320 (4:204)	scaffold_10:6776109-6776624(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7126.1.S1_at	B	B1S	POPTR_0006s22290	POPTR_0006s22290 (6:547)	NA	NA	Q7FAE1	Momilactone A synthase	AT1G52340.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g59610.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7128.1.S1_at	B	B1S	POPTR_0001s13050	POPTR_0001s13050 (8:536)	NA	NA	Q9Y5Z4	Heme-binding protein 2	AT1G17100.1	SOUL heme-binding family protein 	LOC_Os01g11230.1	"SOUL heme-binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7130.1.S1_at	B	B1S	POPTR_0010s01730	POPTR_0010s01730 (0:404)	NA	NA	Q94F30	Ubiquitin-like-specific protease ESD4	AT4G15880.1	Cysteine proteinases superfamily protein 	LOC_Os01g25370.1	"SUMO protease, putative, expressed"	Medtr8g138660.1	"Intermediate filament protein; Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.7131.3.S1_a_at	B	B1S	POPTR_0009s03240	POPTR_0009s03240 (8:209)	NA	NA	Q9LX82	Transcription factor MYB48	AT3G46130.1	myb domain protein 48 	LOC_Os11g47460.1	"MYB family transcription factor, putative, expressed"	Medtr2g114450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7136.1.A1_at	B	B1S	POPTR_0010s00910	POPTR_0010s00910 (5:1101)	NA	NA	Q80ZX8	Sperm-associated antigen 1	AT3G16760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g22140.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g065330.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.714.2.A1_at	B	B1S	POPTR_0008s06510	POPTR_0008s06510 (7:384)	scaffold_8:3871663-3871813(+) (10)	NA	NA	NA	AT5G23950.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7147.2.S1_at	B	B1S	POPTR_0017s13430	POPTR_0017s13430 (4:1640)	NA	NA	P39598	Uncharacterized protein ywbO	AT5G38900.1	Thioredoxin superfamily protein 	NA	NA	Medtr7g014900.2	DSBA oxidoreductase; Thioredoxin-like fold 	NA	GO:0015035|protein disulfide oxidoreductase activity	GO:0030288|outer membrane-bounded periplasmic space
Ptp.7152.1.A1_at	B	B1S	POPTR_0003s11130	POPTR_0003s11130 (6:496)	NA	NA	NA	NA	AT1G62530.2	Plant protein of unknown function (DUF863) 	LOC_Os10g40580.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7153.1.S1_at	B	B1S	POPTR_0001s36080	POPTR_0001s36080 (6:416)	NA	NA	NA	NA	AT5G40690.1	"CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os05g23130.1	expressed protein	Medtr4g079730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7156.1.S1_at	B	B1S	POPTR_0002s06860	POPTR_0002s06860 (5:522)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7157.1.S1_at	B	B1S	POPTR_0014s06760	POPTR_0014s06760 (5:496)	NA	NA	Q6AZT2	Spastin	AT2G45500.1	AAA-type ATPase family protein 	LOC_Os06g03940.1	"spastin, putative, expressed"	Medtr4g069940.1	"AAA ATPase, central region; MIT "	NA	GO:0005524|ATP binding	NA
Ptp.7158.1.S1_at	B	B1S	POPTR_0011s05340	POPTR_0011s05340 (0:205)	NA	NA	Q03211	Pistil-specific extensin-like protein	AT2G33790.1	arabinogalactan protein 30 	LOC_Os01g07010.1	"POEI38 - Pollen Ole e I allergen and extensin family protein precursor, putative"	Medtr4g141270.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7159.1.S1_at	B	B1S	POPTR_0009s12400	POPTR_0009s12400 (5:469)	NA	NA	Q9SDZ9	Purple acid phosphatase 2	AT2G16430.2	purple acid phosphatase 10 	LOC_Os01g56880.1	"purple acid phosphatase precursor, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
Ptp.7168.1.S1_at	B	B1S	POPTR_0003s12580	POPTR_0003s12580 (8:502)	NA	NA	Q9SH30	Putative copper-transporting ATPase 3	AT1G63440.1	heavy metal atpase 5 	LOC_Os04g46940.1	"copper-transporting ATPase 3, putative, expressed"	Medtr8g096560.1	Calcium-binding EF-hand; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
Ptp.7171.1.S1_at	B	B1S	POPTR_0002s17170	POPTR_0002s17170 (3:335)	NA	NA	Q9FGB8	Probable F-box protein At5g36000	AT5G36000.1	BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7174.1.S1_at	B	B1S	POPTR_0001s06840	POPTR_0001s06840 (0:110)	NA	NA	A8K979	ERI1 exoribonuclease 2	AT3G15140.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g17279.1	"exonuclease, putative, expressed"	Medtr8g043920.1	"Prion protein-interacting protein, related "	NA	GO:0008270|zinc ion binding	NA
Ptp.7177.1.S1_at	B	B1S	POPTR_0019s00740	POPTR_0019s00740 (0:1051)	NA	NA	NA	NA	AT1G47570.1	RING/U-box superfamily protein 	LOC_Os11g07450.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g144600.1	"Zinc finger, RING-type; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7181.1.S1_at	B	B1S	POPTR_0005s14190	POPTR_0005s14190 (8:712)	NA	NA	Q9FX85	Peroxidase 10	AT1G49570.1	Peroxidase superfamily protein 	LOC_Os10g02070.1	"peroxidase precursor, putative, expressed"	Medtr5g017850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.7184.1.S1_at	B	B2S	POPTR_0005s14920	POPTR_0005s14920 (0:87)//POPTR_0005s14940 (0:87)	NA	NA	Q9FKD0	Probable S-adenosylmethionine-dependent methyltransferase At5g37970	AT5G37970.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g56950.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.7189.1.S1_at	B	B1S	POPTR_0015s09270	POPTR_0015s09270 (7:347)	scaffold_15:10510048-10510417(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.719.1.S1_at	B	B1S	POPTR_0005s07390	POPTR_0005s07390 (8:543)	NA	NA	Q9SJZ2	Peroxidase 17	AT2G22420.1	Peroxidase superfamily protein 	LOC_Os09g29490.1	"peroxidase precursor, putative, expressed"	Medtr4g032010.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.7194.1.S1_at	B	B1S	POPTR_0003s12910	POPTR_0003s12910 (7:477)	NA	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G63700.1	Protein kinase superfamily protein 	LOC_Os02g44642.1	"STE_MEKK_ste11_MAP3K.10 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g126720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7196.1.S1_at	B	B1S	POPTR_0007s12730	POPTR_0007s12730 (7:784)	NA	NA	O64989	Cytochrome P450 90B1	AT3G50660.1	Cytochrome P450 superfamily protein 	LOC_Os03g12660.1	"cytochrome P450, putative, expressed"	Medtr8g093510.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7196.2.A1_at	B	B1S	POPTR_0007s12740	POPTR_0007s12740 (2:365)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.720.1.S1_at	B	B1S	POPTR_0010s25810	POPTR_0010s25810 (8:1863)	NA	NA	Q8H1G0	GATA transcription factor 28	AT1G51600.2	ZIM-LIKE 2 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149710.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.7208.1.S1_at	B	B1S	POPTR_0002s18620	POPTR_0002s18620 (2:645)	NA	NA	Q09893	Uncharacterized protein C24B11.05	AT3G62040.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g61829.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr4g084040.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.721.1.A1_at	B	B1S	POPTR_0016s14170	POPTR_0016s14170 (7:212)	scaffold_16:13413688-13413967(+) (11)	NA	NA	NA	AT1G06920.1	ovate family protein 4 	LOC_Os01g60810.1	"DUF623 domain containing protein, expressed"	Medtr5g083050.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7211.1.S1_at	B	B1S	POPTR_0377s00200	POPTR_0377s00200 (5:302)	NA	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
Ptp.7213.1.S1_at	B	B1S	POPTR_0018s01330	POPTR_0018s01330 (0:486)	NA	NA	Q9ZP41	EG45-like domain containing protein	NA	NA	LOC_Os09g29710.1	"beta-expansin precursor, putative, expressed"	Medtr3g136440.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7218.1.S1_at	B	B1S	POPTR_0016s10140	POPTR_0016s10140 (8:501)	NA	NA	NA	NA	AT3G53980.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g33920.1	"LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7221.1.S1_at	B	B1S	POPTR_0006s16060	POPTR_0006s16060 (0:213)	NA	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os06g05130.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7223.1.S1_at	B	B1S	POPTR_0009s07830	POPTR_0009s07830 (8:1335)	NA	NA	NA	NA	AT3G51780.1	BCL-2-associated athanogene 4 	LOC_Os01g61500.1	"BAG domain containing protein, expressed"	Medtr7g075760.1	"Ubiquitin; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.7224.1.S1_at	B	B1A	POPTR_0008s06900	POPTR_0008s06900 (8:501)	NA	NA	P0A522	Probable ATP-dependent Clp protease ATP-binding subunit	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7225.1.S1_at	B	B1S	POPTR_0013s07100	POPTR_0013s07100 (8:552)	NA	NA	Q9SRQ8	RING-H2 finger protein ATL51	AT3G03550.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g029880.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.723.1.S1_at	B	B1S	POPTR_0016s07440	POPTR_0016s07440 (6:656)	scaffold_16:5304205-5307985(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7235.1.S1_at	B	B3S	POPTR_0016s01070	POPTR_0016s01090 (0:569)//POPTR_0016s01070 (0:544)//POPTR_0016s01080 (0:488)	NA	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.7249.1.A1_at	B	B1S	POPTR_0016s06550	POPTR_0016s06550 (8:484)	scaffold_16:4396760-4397270(+) (10)	NA	Q67XX3	F-box protein At5g06550	AT5G06550.1	"CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). "	LOC_Os11g36450.1	"OsFBO15 - F-box and other domain containing protein, expressed"	Medtr3g150440.1	"Transcription factor jumonji, jmjC; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.725.1.A1_at	B	B2S	POPTR_0002s14750	POPTR_0002s14750 (8:140)//POPTR_0014s06400 (2:123)	NA	NA	O81312	UDP-glucuronate 4-epimerase 3	AT4G00110.1	UDP-D-glucuronate 4-epimerase 3 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr4g025510.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.7257.1.A1_at	B	B1S	POPTR_0015s04770	POPTR_0015s04770 (5:59)	NA	NA	NA	NA	AT1G18290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g03080.1	expressed protein	Medtr4g154720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.726.1.A1_at	B	B1S	POPTR_0014s02420	POPTR_0014s02420 (6:150)	NA	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.7264.1.S1_at	B	B1S	POPTR_0016s05180	POPTR_0016s05180 (6:486)	NA	NA	Q9LIC3	"Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial"	AT3G13770.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g41040.1	"pentatricopeptide, putative, expressed"	Medtr1g071450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7265.2.S1_at	B	B1S	POPTR_0005s15840	POPTR_0005s15840 (7:396)	NA	NA	Q6NRL0	PrdX-deacylase domain-containing protein 1	AT1G44835.2	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g52880.2	"ybaK/prolyl-tRNA synthetase family protein, putative, expressed"	Medtr3g097700.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7273.1.S1_at	B	B1S	POPTR_0013s06470	POPTR_0013s06470 (5:533)	NA	NA	O14981	TATA-binding protein-associated factor 172	AT3G54280.1	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases 	LOC_Os02g06592.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr4g041710.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.7277.1.S1_at	B	B1S	POPTR_0006s25350	POPTR_0006s25350 (3:348)	NA	NA	P59082	Lachrymatory-factor synthase	AT4G32870.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os01g52570.1	"lachrymatory factor synthase, putative, expressed"	Medtr3g130360.1	"Lachrymatory-factor synthase precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7282.1.S1_at	B	B1S	POPTR_0010s03050	POPTR_0010s03050 (7:541)	NA	NA	Q6IQ16	Speckle-type POZ protein-like	AT3G06190.1	BTB-POZ and MATH domain 2 	LOC_Os07g46160.1	"MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
Ptp.7284.1.S1_at	B	B1S	POPTR_0010s15730	POPTR_0010s15730 (5:283)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7286.1.S1_at	B	B1S	POPTR_0011s14990	POPTR_0011s14990 (5:1256)	NA	NA	Q9SV84	Probable aquaporin NIP5-1	AT4G10380.1	NOD26-like intrinsic protein 5;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.729.1.A1_at	B	B1S	POPTR_0162s00240	POPTR_0162s00240 (8:311)	NA	NA	NA	NA	AT1G73970.1	unknown protein; Has 34 Blast hits to 33 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g03090.1	expressed protein	Medtr3g016590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7291.1.S1_at	B	B1S	POPTR_0010s10440	POPTR_0010s10440 (6:485)	NA	NA	Q8W4I4	Potassium transporter 6	AT1G70300.1	K+ uptake permease 6 	LOC_Os06g42030.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.7294.1.S1_at	B	B1S	POPTR_0015s01720	POPTR_0015s01720 (6:468)	NA	NA	NA	NA	AT5G53440.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g124190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7297.1.S1_at	B	B2S	POPTR_0017s00550	POPTR_0017s00550 (0:383)//POPTR_0017s00570 (0:379)	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g029930.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.7298.1.S1_at	B	B1S	POPTR_0017s11520	POPTR_0017s11520 (6:327)	scaffold_17:11262778-11263270(-) (9)	NA	Q91WQ5	TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	NA	NA	LOC_Os01g09020.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g047810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7302.1.S1_at	B	B1S	POPTR_0015s03350	POPTR_0015s03350 (0:21)	NA	NA	NA	NA	AT1G18470.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7306.2.S1_at	B	B3S	POPTR_0010s06930	POPTR_0010s06930 (5:48)//POPTR_0010s06950 (5:48)//POPTR_0010s06940 (5:48)	NA	NA	O80763	Probable nucleoredoxin 1	AT1G60420.1	DC1 domain-containing protein 	LOC_Os03g29190.2	"PDI, putative, expressed"	Medtr3g133070.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin domain 2; C1-like; Thioredoxin fold "	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.7307.1.S1_at	B	B1S	POPTR_0008s18400	POPTR_0008s18400 (6:176)	NA	NA	Q9SS90	E3 ubiquitin-protein ligase RGLG1	AT3G01650.1	RING domain ligase1 	LOC_Os01g68060.1	"copine, putative, expressed"	Medtr3g102530.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.731.1.A1_at	B	B1S	POPTR_0001s37110	POPTR_0001s37110 (7:252)	NA	NA	Q7G188	Fimbrin-1	AT4G26700.2	fimbrin 1 	LOC_Os02g48740.1	"fimbrin-like protein 2, putative, expressed"	Medtr5g101620.1	"Actin-binding, actinin-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7315.1.S1_at	B	B2S	POPTR_0135s00210	POPTR_0135s00210 (7:1292)//POPTR_0001s22100 (6:1060)	NA	NA	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os06g43930.1	"OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
Ptp.7319.1.S1_at	B	B1S	POPTR_0015s10410	POPTR_0015s10410 (6:120)	NA	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7320.1.S1_at	B	B1S	POPTR_0015s01600	POPTR_0015s01600 (7:233)	NA	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT5G24240.1	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr3g124030.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
Ptp.7324.1.S1_at	B	B1S	POPTR_0009s07980	POPTR_0009s07980 (5:656)	NA	NA	Q642R9	Rab3 GTPase-activating protein catalytic subunit	AT5G58510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g18440.1	expressed protein	Medtr5g100640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7335.2.S1_at	B	B1S	POPTR_0006s04770	POPTR_0006s04770 (4:236)	NA	NA	O22230	Heat stress transcription factor B-3	AT2G41690.1	heat shock transcription factor B3 	LOC_Os04g48030.1	"heat stress transcription factor B-1, putative, expressed"	Medtr7g108580.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.7339.1.S1_at	B	B1S	POPTR_0003s19170	POPTR_0003s19170 (6:1123)	NA	NA	Q6J163	Auxin-induced protein 5NG4	AT5G07050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr8g044450.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.7342.1.S1_at	B	B1S	POPTR_0005s03650	POPTR_0005s03650 (8:538)	NA	NA	P46976	Glycogenin-1	AT1G08990.1	plant glycogenin-like starch initiation protein 5 	LOC_Os03g08600.1	"glycosyl transferase, putative, expressed"	Medtr7g139380.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.7343.1.S1_at	B	B3S	POPTR_0019s13970	POPTR_0019s13970 (8:567)//POPTR_0019s13950 (2:374)//POPTR_1008s00220 (0:342)	NA	NA	NA	NA	AT4G10270.1	Wound-responsive family protein 	LOC_Os04g54240.1	"wound induced protein, putative, expressed"	Medtr2g095480.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7354.1.S1_at	B	B1S	POPTR_0006s22930	POPTR_0006s22930 (6:220)	NA	NA	NA	NA	AT3G52710.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g127500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7365.1.S1_at	B	B1S	POPTR_0015s10720	POPTR_0015s10720 (6:369)	NA	NA	Q9FK33	"Pentatricopeptide repeat-containing protein At5g50390, chloroplastic"	AT5G50390.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os08g04400.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr5g103280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7367.1.S1_at	B	B1S	POPTR_0005s05500	POPTR_0005s05500 (5:396)	NA	NA	O22768	Transcription factor UNE12	AT4G02590.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g58330.1	"BHLH transcription factor, putative, expressed"	Medtr1g083450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.7374.1.S1_at	B	B1S	POPTR_0008s04810	POPTR_0008s04810 (5:328)	scaffold_8:2792134-2792632(-) (11)	NA	Q4P7A4	"Putative transferase CAF17, mitochondrial"	AT4G12130.1	Glycine cleavage T-protein family 	LOC_Os06g04380.1	"aminomethyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7381.1.S1_at	B	B1S	POPTR_0010s01400	POPTR_0010s01400 (7:404)	NA	NA	Q8L9T5	RING-H2 finger protein ATL2	AT3G16720.1	TOXICOS EN LEVADURA 2 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7383.2.S1_at	B	B1S	POPTR_0004s20830	POPTR_0004s20830 (8:366)	scaffold_4:20208989-20209417(+) (11)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20780.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.7387.1.S1_at	B	B1S	POPTR_0002s19370	POPTR_0002s19370 (3:270)	NA	NA	NA	NA	AT3G62330.1	Zinc knuckle (CCHC-type) family protein 	LOC_Os01g14920.1	"zinc knuckle family protein, putative, expressed"	Medtr7g133280.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.7389.2.A1_at	B	B1S	POPTR_0019s03850	POPTR_0019s03850 (0:83)	NA	NA	Q54MZ3	Anaphase-promoting complex subunit cdc20	AT4G33270.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g47180.2	"WD repeat-containing protein, putative, expressed"	Medtr5g008110.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7394.1.A1_at	B	B1S	POPTR_0002s01040	POPTR_0002s01040 (2:227)	NA	NA	P46573	"Protein kinase APK1B, chloroplastic"	AT1G76360.1	Protein kinase superfamily protein 	LOC_Os04g47620.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7395.2.S1_at	B	B1A	POPTR_0016s13510	POPTR_0016s13510 (8:518)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7398.1.S1_at	B	B1S	POPTR_0011s11120	POPTR_0011s11120 (6:240)	NA	NA	NA	NA	AT1G78815.1	Protein of unknown function (DUF640) 	LOC_Os02g56610.1	"DUF640 domain containing protein, putative, expressed"	Medtr2g092170.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7405.2.S1_at	B	B1S	POPTR_0011s05250	POPTR_0011s05250 (8:121)	NA	NA	Q05758	"Ketol-acid reductoisomerase, chloroplastic"	AT3G58610.3	ketol-acid reductoisomerase 	LOC_Os05g49800.1	"ketol-acid reductoisomerase, chloroplast precursor, putative, expressed"	Medtr4g109610.1	Acetohydroxy acid isomeroreductase; ; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009082|branched chain family amino acid biosynthetic process	GO:0004455|ketol-acid reductoisomerase activity	NA
Ptp.741.1.A1_at	B	B1S	POPTR_0012s14150	POPTR_0012s14150 (8:114)	NA	NA	Q8GW72	Alpha-L-fucosidase 1	AT2G28100.1	alpha-L-fucosidase 1 	LOC_Os09g34920.1	"glycosyl hydrolase family 29, putative, expressed"	Medtr1g130150.1	"Glycoside hydrolase, family 29 (alpha-L-fucosidase) "	GO:0005975|carbohydrate metabolic process||GO:0007155|cell adhesion	GO:0004560|alpha-L-fucosidase activity	NA
Ptp.7419.1.S1_at	B	B1S	POPTR_0009s16330	POPTR_0009s16330 (8:493)	NA	NA	NA	NA	AT2G36026.1	Ovate family protein 	LOC_Os10g38880.1	"DUF623 domain containing protein, expressed"	Medtr5g087170.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7426.1.A1_at	B	B1S	POPTR_0005s18520	POPTR_0005s18520 (7:461)	NA	NA	P43297	Cysteine proteinase RD21a	AT1G47128.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.7437.1.S1_at	B	B1A	POPTR_0009s11030	POPTR_0009s11030 (0:365)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.744.1.A1_at	B	B1S	POPTR_0015s00570	POPTR_0015s00570 (6:203)	scaffold_15:351245-351556(+) (11)	NA	Q94JX9	Nascent polypeptide-associated complex subunit alpha-like protein 2	AT3G49470.1	nascent polypeptide-associated complex subunit alpha-like protein 2 	LOC_Os05g31000.1	"nascent polypeptide-associated complex subunit alpha, putative, expressed"	Medtr3g122460.1	Ubiquitin-associated; Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7444.1.S1_at	B	B1S	POPTR_0002s03340	POPTR_0002s03340 (7:852)	NA	NA	Q40517	Mitogen-activated protein kinase homolog NTF3	AT1G10210.2	mitogen-activated protein kinase 1 	LOC_Os06g48590.2	"CGMC_MAPKCMGC_2_SLT2y_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g134400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7445.1.S1_at	B	B1S	POPTR_0004s10345	POPTR_0004s10345 (7:2595)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7446.1.S1_at	B	B2S	POPTR_0012s10750	POPTR_0012s10750 (1:462)//POPTR_0012s10740 (0:412)	NA	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g61740.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr6g025640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7457.1.S1_at	B	B1S	POPTR_0010s25750	POPTR_0010s25750 (7:292)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7458.1.S1_at	B	B1S	POPTR_0011s13280	POPTR_0011s13280 (8:423)	NA	NA	Q2TBN3	Centrin-2	AT4G27280.1	Calcium-binding EF-hand family protein 	LOC_Os06g46950.1	"EF hand family protein, putative, expressed"	Medtr2g095910.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7460.1.S1_at	B	B1S	POPTR_0006s07530	POPTR_0006s07530 (7:1134)	scaffold_6:5457101-5460092(-) (11)	NA	NA	NA	AT4G30010.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g07910.2	"fiber protein Fb15, putative, expressed"	Medtr2g042700.1	"fiber protein Fb15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7463.1.S1_at	B	B1S	POPTR_0016s10960	POPTR_0016s10960 (8:328)	NA	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT2G36670.2	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7464.1.S1_at	B	B1S	POPTR_0018s07420	POPTR_0018s07420 (2:317)	NA	NA	Q8RYC8	Auxin response factor 19	AT1G19220.1	auxin response factor 19 	LOC_Os06g09660.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7473.1.S1_at	B	B1S	POPTR_0008s13330	POPTR_0008s13330 (8:1162)	NA	NA	NA	NA	AT1G70670.1	Caleosin-related family protein 	LOC_Os06g14370.2	"caleosin related protein, putative, expressed"	AC233676_20.1	Caleosin related AC233676.2 83014-79445 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7477.1.S1_at	B	B1S	POPTR_0012s07050	POPTR_0012s07050 (7:1214)	NA	NA	Q9CA68	GDSL esterase/lipase At1g74460	AT1G74460.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os06g12410.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g085940.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.7479.1.S1_at	B	B1S	POPTR_0009s15790	POPTR_0009s15790 (5:715)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.748.1.S1_at	B	B1S	POPTR_0008s19770	POPTR_0008s19770 (4:49)	NA	NA	NA	NA	AT1G70180.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g39090.1	"SAM domain containing protein, putative, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7488.1.S1_at	B	B1S	POPTR_0018s09250	POPTR_0018s09250 (8:322)	NA	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G19670.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	Medtr4g159530.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.7496.1.S1_at	B	B1S	POPTR_0010s21850	POPTR_0010s21850 (6:325)	NA	NA	NA	NA	AT2G39435.1	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related 	LOC_Os03g17840.1	expressed protein	Medtr7g022720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.751.1.S1_at	B	B1S	POPTR_0002s02040	POPTR_0002s02040 (8:861)	NA	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G20110.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g50840.1	"zinc finger family protein, putative, expressed"	Medtr3g156570.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7520.1.S1_at	B	B1S	POPTR_0008s14660	POPTR_0008s14660 (3:400)	NA	NA	O80739	Putative potassium transporter 12	AT1G60160.1	Potassium transporter family protein 	LOC_Os09g21000.1	"potassium transporter, putative, expressed"	Medtr2g008870.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.7524.1.S1_at	B	B1S	POPTR_0644s00220	POPTR_0644s00220 (7:2092)	NA	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT5G06210.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g33810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g028670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.7529.1.S1_at	B	B1S	POPTR_0001s34860	POPTR_0001s34860 (8:963)	NA	NA	O34331	Putative rRNA methyltransferase ylbH	AT3G28460.1	methyltransferases 	LOC_Os03g52640.2	expressed protein	Medtr6g010050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7536.1.A1_at	B	B1S	POPTR_0015s13170	POPTR_0015s13170 (0:256)	NA	NA	P93788	Remorin	AT5G23750.2	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.754.1.S1_at	B	B1S	POPTR_0008s08940	POPTR_0008s08940 (6:306)	NA	NA	Q6P4K8	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	AT1G26550.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g24540.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g090170.1	PpiC-type peptidyl-prolyl cis-trans isomerase 	NA	GO:0016853|isomerase activity	NA
Ptp.7541.1.A1_at	B	B1S	POPTR_0006s18470	POPTR_0006s18470 (0:10)	NA	NA	P42056	Mitochondrial outer membrane protein porin of 36 kDa	AT5G57490.1	voltage dependent anion channel 4 	LOC_Os03g04460.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr8g128760.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.755.1.S1_at	B	B1S	POPTR_0001s37610	POPTR_0001s37610 (5:344)	NA	NA	P35659	Protein DEK	AT4G26630.2	DEK domain-containing chromatin associated protein 	LOC_Os03g40010.1	"DEK C terminal domain containing protein, expressed"	Medtr5g103320.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7554.1.S1_at	B	B1S	POPTR_0001s22320	POPTR_0001s22320 (0:293)	NA	NA	Q9SJF0	Serine/threonine-protein phosphatase BSL2	AT1G08420.1	BRI1 suppressor 1 (BSU1)-like 2 	LOC_Os12g42310.1	"serine/threonine-protein phosphatase BSL2, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.7573.1.A1_at	B	B1S	POPTR_0006s02670	POPTR_0006s02670 (7:217)	NA	NA	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os05g41070.1	"bZIP transcription factor, putative, expressed"	Medtr7g104860.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.7579.1.S1_at	B	B1S	POPTR_0008s11150	POPTR_0008s11150 (2:364)	NA	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G13635.2	DNA glycosylase superfamily protein 	LOC_Os08g38170.1	"methyladenine glycosylase, putative, expressed"	Medtr8g077310.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
Ptp.758.1.S1_at	B	B1S	POPTR_0002s06250	POPTR_0002s06250 (3:598)	NA	NA	Q9JI38	tRNA pseudouridine synthase 3	AT1G34150.1	Pseudouridine synthase family protein 	LOC_Os03g26440.1	"tRNA pseudouridine synthase family protein, putative"	Medtr8g133980.2	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.7586.1.S1_at	B	B1S	POPTR_0001s25690	POPTR_0001s25690 (5:350)	NA	NA	O82390	"Sodium-dependent phosphate transport protein 1, chloroplastic"	AT2G29650.1	phosphate transporter 4;1 	LOC_Os01g17240.1	"transporter, major facilitator family, putative, expressed"	AC233571_3.1	Major facilitator superfamily MFS_1 AC233571.2 15766-21806 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7587.1.S1_at	B	B1S	POPTR_0010s19110	POPTR_0010s19110 (6:292)	NA	NA	O12944	DNA repair and recombination protein RAD54-like (Fragment)	AT3G42670.1	chromatin remodeling 38 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g090790.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.7594.1.S1_at	B	B1S	POPTR_0007s10500	POPTR_0007s10500 (6:520)	NA	NA	C0LGS3	Probable LRR receptor-like serine/threonine-protein kinase At4g37250	AT4G37250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g02250.1	"transposon protein, putative, unclassified, expressed"	Medtr4g011740.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.7599.2.S1_at	B	B1S	POPTR_0001s16620	POPTR_0001s16620 (6:510)	NA	NA	NA	NA	AT3G14110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g32730.2	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr8g025640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7607.1.S1_at	B	B1S	POPTR_0001s13240	POPTR_0001s13240 (1:249)	NA	NA	Q93ZM9	Protein TIFY 9	AT5G13220.1	jasmonate-zim-domain protein 10 	LOC_Os04g32480.1	"zinc-finger protein, putative, expressed"	Medtr5g013680.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7611.1.S1_at	B	B1S	POPTR_0009s15980	POPTR_0009s15980 (6:2152)	NA	NA	Q9ZVC7	Xylogen-like protein 11	AT3G43720.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g41030.1	"LTPL67 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g111400.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7616.1.S1_at	B	B1S	POPTR_0012s14160	POPTR_0012s14160 (0:123)	NA	NA	Q09143	High affinity cationic amino acid transporter 1	AT4G21120.1	amino acid transporter 1 	LOC_Os12g41890.1	"amino acid permease family protein, putative"	Medtr4g137890.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
Ptp.7621.1.S1_at	B	B1S	POPTR_0003s17560	POPTR_0003s17560 (4:122)	scaffold_3:16898403-16902360(+) (10)	NA	Q5F259	Ankyrin repeat domain-containing protein 13B	AT1G04780.1	Ankyrin repeat family protein 	LOC_Os07g25460.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7623.1.S1_at	B	B1S	POPTR_0014s17630	POPTR_0014s17630 (5:155)	NA	NA	Q39266	Zinc finger protein 7	AT1G24625.1	zinc finger protein 7 	NA	NA	Medtr3g087170.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7625.1.S1_at	B	B1S	POPTR_0015s03100	POPTR_0015s03100 (6:216)	NA	NA	NA	NA	AT1G73960.1	TBP-associated factor 2 	LOC_Os09g24440.1	expressed protein	Medtr8g119110.1	"TAF2 ; metallopeptidase/ zinc, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7632.1.S1_at	B	B1S	POPTR_0009s03950	POPTR_0009s03950 (0:256)	NA	NA	Q94DG6	Zinc transporter 1	AT5G59520.1	ZRT/IRT-like protein 2 	LOC_Os01g74110.1	"metal cation transporter, putative, expressed"	Medtr2g117090.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
Ptp.7634.1.S1_at	B	B1S	POPTR_0006s12530	POPTR_0006s12530 (8:544)	NA	NA	Q9M2Y9	Transcription factor RAX3	AT5G57620.1	myb domain protein 36 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7636.1.S1_at	B	B1S	POPTR_0019s08410	POPTR_0019s08410 (3:210)	NA	NA	O36015	Putative ribosomal RNA methyltransferase C4F10.03c	AT5G01230.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g49140.1	"ribosomal RNA large subunit methyltransferase J, putative, expressed"	Medtr2g015180.1	Ribosomal RNA methyltransferase RrmJ/FtsJ 	GO:0032259|methylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0008168|methyltransferase activity	NA
Ptp.7641.1.S1_at	B	B1S	POPTR_0009s11210	POPTR_0009s11210 (3:126)	NA	NA	NA	NA	AT1G49470.1	Family of unknown function (DUF716)  	LOC_Os08g36040.1	"plant viral response family protein, putative, expressed"	Medtr4g092830.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7642.1.S1_at	B	B1S	POPTR_0008s17750	POPTR_0008s17750 (7:111)	NA	NA	NA	NA	AT5G43230.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01810.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g39490.3	expressed protein	Medtr1g090380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7656.1.S1_at	B	B1S	POPTR_0008s20960	POPTR_0008s20960 (1:1371)	NA	NA	B9RT04	UPF0497 membrane protein 12	AT4G15630.1	Uncharacterised protein family (UPF0497) 	LOC_Os01g26120.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g139630.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7666.1.S1_at	B	B1S	POPTR_0014s12360	POPTR_0014s12360 (8:588)	NA	NA	Q99685	Monoglyceride lipase	AT3G62860.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g29974.1	"lipase, putative, expressed"	Medtr8g068300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7667.1.S1_at	B	B1S	POPTR_0004s04440	POPTR_0004s04440 (6:2263)	NA	NA	P56820	Eukaryotic translation initiation factor 3 subunit D	AT4G20980.4	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 	LOC_Os05g49150.1	"eukaryotic translation initiation factor 3 subunit D, putative, expressed"	Medtr2g017440.1	"Eukaryotic translation initiation factor 3, subunit 7 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.7671.1.A1_at	B	B1S	POPTR_0004s15840	POPTR_0004s15840 (8:346)	NA	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7675.1.S1_at	B	B1S	POPTR_0017s12490	POPTR_0017s12490 (5:553)	NA	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os06g18670.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr6g025520.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7679.1.S1_at	B	B1S	POPTR_0007s07690	POPTR_0007s07690 (1:197)	NA	NA	Q9LEY1	Serine carboxypeptidase-like 35	AT5G08260.1	serine carboxypeptidase-like 35 	LOC_Os02g42310.1	"OsSCP8 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g100960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.7680.2.A1_at	B	B1S	POPTR_0009s16410	POPTR_0009s16410 (0:196)	NA	NA	Q9H0G5	Coiled-coil domain-containing protein 55	AT2G27285.1	Coiled-coil domain-containing protein 55 (DUF2040) 	LOC_Os04g35910.1	"coiled-coil domain-containing protein 55, putative, expressed"	Medtr5g102580.1	"Coiled-coil domain-containing protein 55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7683.1.S1_at	B	B1S	POPTR_0009s14150	POPTR_0009s14150 (6:334)	NA	NA	Q39108	"Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic"	AT4G38460.1	geranylgeranyl reductase 	LOC_Os02g44780.3	"polyprenyl synthetase, putative, expressed"	AC146550_1.1	Polyprenyl synthetase AC146550.40 4-1850 E EGN_Mt090430 200	GO:0008299|isoprenoid biosynthetic process	NA	NA
Ptp.7685.2.S1_a_at	B	B1S	POPTR_0010s22040	POPTR_0010s22040 (7:512)	NA	NA	NA	NA	AT3G12345.1	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g28950.1	expressed protein	Medtr1g146160.1	"FKBP-type peptidyl-prolyl cis-trans isomerase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7693.1.S1_at	B	B1S	POPTR_0013s15400	POPTR_0013s15400 (5:243)	NA	NA	NA	NA	AT5G58320.2	Kinase interacting (KIP1-like) family protein 	LOC_Os01g07370.2	"KIP1, putative, expressed"	Medtr5g083340.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7696.1.S1_at	B	B1S	POPTR_0017s02500	POPTR_0017s02500 (8:311)	NA	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g026270.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.7699.1.S1_at	B	B1S	POPTR_0002s02070	POPTR_0002s02070 (7:466)	NA	NA	NA	NA	AT1G20100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 471 Blast hits to 438 proteins in 92 species: Archae - 0; Bacteria - 14; Metazoa - 217; Fungi - 43; Plants - 91; Viruses - 1; Other Eukaryotes - 105 (source: NCBI BLink). 	NA	NA	Medtr1g039730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7701.1.A1_at	B	B1S	POPTR_0015s02540	POPTR_0015s02540 (7:261)	scaffold_15:1823702-1824070(-) (10)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G18490.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g04710.1	"aspartic proteinase, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7703.1.S1_at	B	B1S	POPTR_0019s12000	POPTR_0019s12000 (6:403)	NA	NA	Q39846	Seed biotin-containing protein SBP65	AT2G42560.1	late embryogenesis abundant domain-containing protein / LEA domain-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7707.1.S1_at	B	B1S	POPTR_0004s00470	POPTR_0004s00470 (0:15)	NA	NA	NA	NA	AT4G03965.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g147420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7708.1.S1_at	B	B1S	POPTR_0002s10890	POPTR_0002s10890 (7:820)	NA	NA	Q9LSK9	Uncharacterized protein At5g65660	AT5G65660.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr5g076240.1	"hydroxyproline-rich glycoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7709.1.S1_s_at	B	B1S	POPTR_0004s11190	POPTR_0004s11190 (8:340)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7714.1.S1_at	B	B1S	POPTR_0001s01890	POPTR_0001s01890 (3:216)	NA	NA	P37707	B2 protein	AT5G61910.3	DCD (Development and Cell Death) domain protein 	LOC_Os02g51140.1	"N-rich protein, putative, expressed"	Medtr3g151330.1	Kelch related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7721.1.S1_at	B	B1S	POPTR_0018s03620	POPTR_0018s03620 (0:208)	NA	NA	NA	NA	AT5G57510.1	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g128630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7722.1.S1_s_at	B	B1S	POPTR_0004s01960	POPTR_0004s01960 (2:214)	scaffold_4:1233304-1235904(-) (11)	NA	Q6NKX3	F-box/FBD/LRR-repeat protein At2g04230	AT2G04230.1	"FBD, F-box and Leucine Rich Repeat domains containing protein "	NA	NA	Medtr4g110770.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7723.1.S1_at	B	B1S	POPTR_0001s37700	POPTR_0001s37700 (7:517)	NA	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G55830.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g17490.1	expressed protein	Medtr3g009180.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7724.1.S1_at	B	B1S	POPTR_0009s15250	POPTR_0009s15250 (8:339)	NA	NA	Q8LPK4	AP-2 complex subunit alpha-2	AT5G22780.1	"Adaptor protein complex AP-2, alpha subunit "	LOC_Os03g02150.1	"adapitin protein, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.7728.1.S1_at	B	B2S	POPTR_0002s24860	POPTR_0002s24860 (6:259)//POPTR_0002s24870 (3:235)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.773.1.A1_at	B	B1S	POPTR_0015s14020	POPTR_0015s14020 (8:907)	NA	NA	Q9SCY0	"Phosphoglucomutase, chloroplastic"	AT5G51820.1	phosphoglucomutase 	LOC_Os10g11140.1	"phosphoglucomutase, putative, expressed"	Medtr1g129920.2	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
Ptp.7731.1.S1_at	B	B1S	POPTR_0004s21410	POPTR_0004s21410 (2:288)	NA	NA	Q9XH43	CEN-like protein 2	AT2G27550.1	centroradialis 	LOC_Os04g33570.1	"RCN4  Centroradialis-like1 homologous to TFL1  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	Medtr2g108000.1	PEBP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7743.1.S1_s_at	B	B1S	POPTR_0016s02340	POPTR_0016s02340 (8:1103)	NA	NA	Q0D8N0	DEAD-box ATP-dependent RNA helicase 53	AT3G22310.1	putative mitochondrial RNA helicase 1 	LOC_Os07g05050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g097200.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.7744.1.S1_at	B	B1S	POPTR_0016s02480	POPTR_0016s02480 (8:286)	NA	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7745.1.S1_at	B	B1S	POPTR_0014s12970	POPTR_0014s12970 (1:137)	NA	NA	O82261	"Protease Do-like 2, chloroplastic"	AT2G47940.1	DEGP protease 2 	LOC_Os05g05480.1	"OsDegp6 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.7751.1.S1_at	B	B1S	POPTR_0009s09730	POPTR_0009s09730 (7:315)	NA	NA	Q9LT67	Transcription factor bHLH113	AT3G19500.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr2g122580.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.7752.1.S1_at	B	B1S	POPTR_0012s05400	POPTR_0012s05400 (6:94)	NA	NA	Q556I2	Probable 2-aminoethanethiol dioxygenase	AT1G18490.1	Protein of unknown function (DUF1637) 	LOC_Os08g03870.1	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr2g073770.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
Ptp.7757.1.S1_at	B	B1S	POPTR_0005s09250	POPTR_0005s09250 (8:139)	NA	NA	Q9FMX2	Transcription factor TCP7	AT5G23280.1	TCP family transcription factor  	LOC_Os12g07480.1	"TCP family transcription factor, putative, expressed"	Medtr1g143870.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7760.1.S1_at	B	B1S	POPTR_0005s19940	POPTR_0005s19940 (8:572)	NA	NA	Q96QE3	ATPase family AAA domain-containing protein 5	AT1G77620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g15580.1	"AT hook motif family protein, expressed"	Medtr1g037360.1	"nucleoside-triphosphatase/ nucleotide binding, related "	NA	GO:0005524|ATP binding	NA
Ptp.7762.1.S1_at	B	B1S	POPTR_0012s08440	POPTR_0012s08440 (8:396)	NA	NA	Q02166	"Anthranilate phosphoribosyltransferase, chloroplastic"	AT5G17990.1	tryptophan biosynthesis 1 	LOC_Os03g03450.1	"anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed"	Medtr3g114190.1	"Glycosyl transferase, family 3 "	GO:0008152|metabolic process	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.7763.1.S1_at	B	B1S	POPTR_0007s07800	POPTR_0007s07800 (0:22)	scaffold_7:6228057-6228112(-) (11)	NA	Q5M9F1	RNA-binding protein 34	AT3G18610.1	nucleolin like 2 	LOC_Os04g52960.1	"nucleolin, putative, expressed"	Medtr4g101170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.7764.1.S1_at	B	B1S	POPTR_0010s16600	POPTR_0010s16600 (8:1092)	NA	NA	NA	NA	AT1G10380.1	Putative membrane lipoprotein 	LOC_Os06g25950.1	expressed protein	Medtr5g038340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7765.1.S1_at	B	B1S	POPTR_0006s18590	POPTR_0006s18590 (7:143)	NA	NA	P22805	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	AT5G57590.1	adenosylmethionine-8-amino-7-oxononanoate transaminases 	LOC_Os08g14770.1	"aminotransferase, putative, expressed"	Medtr8g128540.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.7767.1.S1_at	B	B1S	POPTR_0015s08960	POPTR_0015s08960 (4:414)	NA	NA	O00566	U3 small nucleolar ribonucleoprotein protein MPP10	AT5G66540.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os11g04200.1	"M phase phosphoprotein 10, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7768.1.S1_at	B	B1S	POPTR_0016s02500	POPTR_0016s02500 (0:12)	NA	NA	Q94BZ1	Protein ZINC INDUCED FACILITATOR-LIKE 1	AT5G13750.1	zinc induced facilitator-like 1 	LOC_Os11g04020.1	"major facilitator superfamily antiporter, putative, expressed"	Medtr8g073830.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7770.1.S1_at	B	B1S	POPTR_0004s23770	POPTR_0004s23770 (8:177)	NA	NA	Q8L7G0	Auxin response factor 1	AT1G59750.4	auxin response factor 1 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr2g005100.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7772.1.S1_at	B	B1S	POPTR_0003s21820	POPTR_0003s21820 (6:109)	NA	NA	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7777.1.S1_at	B	B1S	POPTR_0010s25070	POPTR_0010s25070 (8:382)	NA	NA	NA	NA	AT5G22040.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os03g16730.1	expressed protein	Medtr1g112100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7778.1.S1_at	B	B1S	POPTR_0013s08280	POPTR_0013s08280 (6:256)	NA	NA	B0KWH8	THO complex subunit 2	AT1G24706.1	THO2 	LOC_Os01g68810.1	expressed protein	Medtr4g156300.1	"F5A9.21, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7779.1.S1_at	B	B1S	POPTR_0017s13850	POPTR_0017s13850 (7:163)	NA	NA	Q6PAV2	Probable E3 ubiquitin-protein ligase HERC4	AT5G16040.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os08g33390.1	"Regulator of chromosome condensation domain containing protein, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.778.1.S1_at	B	B1S	POPTR_0019s04490	POPTR_0019s04490 (3:191)	NA	NA	NA	NA	AT3G04160.1	unknown protein; Has 1711 Blast hits to 1353 proteins in 195 species: Archae - 0; Bacteria - 64; Metazoa - 693; Fungi - 201; Plants - 207; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink). 	LOC_Os04g28170.2	expressed protein	Medtr1g093080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7780.1.S1_at	B	B1S	POPTR_0010s26130	POPTR_0010s26130 (8:176)	NA	NA	P49357	"Serine hydroxymethyltransferase 1, mitochondrial"	AT4G37930.1	serine transhydroxymethyltransferase 1 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.7781.1.S1_at	B	B1S	POPTR_0007s09790	POPTR_0007s09790 (0:109)	NA	NA	O81108	"Calcium-transporting ATPase 2, plasma membrane-type"	AT4G37640.1	calcium ATPase 2 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.7786.1.A1_at	B	B1S	POPTR_0004s08560	POPTR_0004s08560 (8:1736)	NA	NA	NA	NA	AT5G16620.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os04g35900.1	"translocon Tic40, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7788.1.S1_at	B	B1S	POPTR_0006s23250	POPTR_0006s23250 (5:106)	NA	NA	NA	NA	AT3G58090.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os01g61890.4	"AT hook motif family protein, expressed"	AC235022_9.1	Tudor AC235022.1 50838-49664 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7789.1.S1_at	B	B1S	POPTR_0005s20820	POPTR_0005s20820 (8:878)	NA	NA	O49289	Putative DEAD-box ATP-dependent RNA helicase 29	AT1G77030.1	"hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases "	LOC_Os08g32090.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr4g109140.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
Ptp.779.1.A1_at	B	B1S	POPTR_0009s09600	POPTR_0009s09600 (8:482)	NA	NA	Q04996	Homeobox protein HAT3.1	AT3G19510.1	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g12400.1	"Homeobox domain containing protein, expressed"	Medtr2g042720.1	"Homeobox; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.7791.1.S1_at	B	B1S	POPTR_0007s02080	POPTR_0007s02080 (1:48)	NA	NA	Q8L9G7	Gamma-secretase subunit APH1-like	AT2G31440.1	"INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). "	LOC_Os02g17280.1	"gamma-secretase subunit APH-1B, putative, expressed"	NA	NA	GO:0043085|positive regulation of catalytic activity||GO:0016485|protein processing	GO:0005515|protein binding	GO:0016021|integral to membrane
Ptp.7792.1.S1_at	B	B1S	POPTR_0005s24640	POPTR_0005s24640 (8:1152)	scaffold_5:23100306-23101501(-) (10)	NA	Q14683	Structural maintenance of chromosomes protein 1A	AT3G54670.1	Structural maintenance of chromosomes (SMC) family protein 	LOC_Os12g44390.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	Medtr8g087350.1	Prefoldin; SMCs flexible hinge 	GO:0016032|viral reproduction||GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane||GO:0005694|chromosome
Ptp.7793.1.S1_at	B	B1S	POPTR_0006s04530	POPTR_0006s04530 (8:205)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g108250.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006353|transcription termination	GO:0003715|transcription termination factor activity	NA
Ptp.7794.1.S1_at	B	B1S	POPTR_0013s14030	POPTR_0013s14030 (6:112)	NA	NA	Q8GY60	Probable protein phosphatase 2C 52	AT4G03415.2	Protein phosphatase 2C family protein 	LOC_Os07g37890.1	"protein phosphatase 2C, putative, expressed"	Medtr4g045040.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7799.1.A1_at	B	B2S	POPTR_0002s02810	POPTR_0002s02810 (8:327)//POPTR_0002s02750 (4:182)	NA	NA	Q9P258	Protein RCC2	AT1G19880.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g56720.1	"RCC2, putative, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7801.1.S1_at	B	B1S	POPTR_0003s03650	POPTR_0003s03650 (4:112)	NA	NA	Q9C6W5	ABC transporter G family member 14	AT1G31770.1	ATP-binding cassette 14 	LOC_Os08g07010.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.7802.1.S1_at	B	B1S	POPTR_0001s10620	POPTR_0001s10620 (7:220)	NA	NA	Q8BU04	Putative E3 ubiquitin-protein ligase UBR7	AT4G23860.3	PHD finger protein-related 	LOC_Os06g33810.1	"zinc finger protein, putative, expressed"	Medtr5g009280.1	"Zinc finger, PHD-type; Zinc finger, N-recognin "	NA	GO:0004842|ubiquitin-protein ligase activity||GO:0008270|zinc ion binding	NA
Ptp.781.1.A1_at	B	B1S	POPTR_0004s20660	POPTR_0004s20660 (6:508)	NA	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os01g16020.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7814.1.S1_at	B	B1S	POPTR_0007s09290	POPTR_0007s09290 (7:188)	NA	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G35780.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7819.1.S1_at	B	B1A	POPTR_0003s13080	POPTR_0003s13080 (8:368)	NA	NA	Q9SUS5	E3 ubiquitin-protein ligase RHA1B	AT1G63840.1	RING/U-box superfamily protein 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7820.1.S1_at	B	B1S	POPTR_0012s11610	POPTR_0012s11610 (2:133)	NA	NA	O80513	Cyclin-U4-1	AT2G44740.1	cyclin p4;1 	LOC_Os10g41430.1	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7821.1.S1_at	B	B1S	POPTR_0022s00690	POPTR_0022s00690 (8:520)	NA	NA	Q168C1	tRNA pseudouridine synthase A	AT1G09800.1	Pseudouridine synthase family protein 	LOC_Os12g09290.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr2g005600.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.7824.1.S1_at	B	B1S	POPTR_0002s18320	POPTR_0002s18320 (0:536)	NA	NA	Q7GCL7	NAC domain-containing protein 74	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.7830.1.S1_at	B	B1S	POPTR_0018s05070	POPTR_0018s05070 (7:484)	NA	NA	Q66KD6	Probable phosphatase phospho2	AT1G17710.1	Pyridoxal phosphate phosphatase-related protein 	LOC_Os01g52230.1	"phosphoethanolamine/phosphocholine phosphatase, putative, expressed"	Medtr2g080200.1	"HAD-superfamily subfamily IB hydrolase, hypothetical 1 "	NA	GO:0016791|phosphatase activity	NA
Ptp.7836.1.S1_at	B	B1S	POPTR_0014s09590	POPTR_0014s09590 (7:305)	NA	NA	Q6AZT7	Nephrocystin-3	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01960.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.784.1.A1_at	B	B1S	POPTR_0010s16180	POPTR_0010s16180 (0:128)	NA	NA	Q949Z1	Polygalacturonase At1g48100	AT1G48100.1	Pectin lyase-like superfamily protein 	LOC_Os05g20020.1	"polygalacturonase, putative, expressed"	Medtr2g037040.1	"Aminoacyl-tRNA synthetase, class I "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.7840.1.S1_at	B	B1S	POPTR_0001s35300	POPTR_0001s35300 (8:447)	NA	NA	Q5ZJW8	Denticleless protein homolog	AT3G27640.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g49200.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g005150.1	"Denticleless protein homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7849.1.S1_at	B	B1S	POPTR_0013s14080	POPTR_0013s14080 (8:659)	NA	NA	Q06BH3	Protein STRUBBELIG-RECEPTOR FAMILY 1	AT2G20850.1	STRUBBELIG-receptor family 1 	LOC_Os02g07960.2	"STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed"	Medtr2g014380.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.785.1.S1_x_at	B	B1S	POPTR_0019s14350	POPTR_0019s14350 (1:379)	NA	NA	Q8LEE9	Fasciclin-like arabinogalactan protein 12	AT5G60490.1	FASCICLIN-like arabinogalactan-protein 12 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.785.2.S1_x_at	B	B2S	POPTR_0019s14430	POPTR_0019s14420 (4:1008)//POPTR_0019s14430 (5:545)	NA	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7852.1.S1_at	B	B1S	POPTR_0016s08720	POPTR_0016s08720 (2:148)	NA	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT2G37080.1	ROP interactive partner 3 	LOC_Os05g03120.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr7g120930.1	"P70 protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7854.1.S1_at	B	B1S	POPTR_0001s40210	POPTR_0001s40210 (1:752)	NA	NA	O82768	"Histidine biosynthesis bifunctional protein hisIE, chloroplastic"	AT1G31860.1	histidine biosynthesis bifunctional protein (HISIE) 	LOC_Os01g16940.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	NA	NA	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004635|phosphoribosyl-AMP cyclohydrolase activity||GO:0004636|phosphoribosyl-ATP diphosphatase activity	NA
Ptp.7857.1.S1_at	B	B1S	POPTR_0014s08060	POPTR_0014s08060 (6:269)	NA	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g40100.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.7858.1.S1_at	B	B1S	POPTR_0010s19530	POPTR_0010s19530 (2:2016)	NA	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g03640.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g094020.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7859.1.S1_at	B	B1S	POPTR_0004s18350	POPTR_0004s18350 (7:290)	NA	NA	NA	NA	AT4G39790.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37040.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr4g140290.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7861.1.S1_at	B	B1S	POPTR_0003s16350	POPTR_0003s16350 (6:62)	NA	NA	Q93ZM9	Protein TIFY 9	AT5G13220.1	jasmonate-zim-domain protein 10 	LOC_Os04g32480.1	"zinc-finger protein, putative, expressed"	Medtr5g013690.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7861.1.S1_s_at	B	B1S	POPTR_0003s16350	POPTR_0003s16350 (4:228)	NA	NA	Q93ZM9	Protein TIFY 9	AT5G13220.1	jasmonate-zim-domain protein 10 	LOC_Os04g32480.1	"zinc-finger protein, putative, expressed"	Medtr5g013690.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7868.1.S1_at	B	B1S	POPTR_0011s04530	POPTR_0011s04530 (7:315)	NA	NA	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog 1	AT1G61210.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58130.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7869.1.S1_at	B	B1S	POPTR_0005s19990	POPTR_0005s19990 (2:54)	NA	NA	Q9CAP8	"Long chain acyl-CoA synthetase 9, chloroplastic"	AT1G77590.1	long chain acyl-CoA synthetase 9 	LOC_Os12g07110.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g100870.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.7871.1.S1_at	B	B1S	POPTR_0008s07570	POPTR_0008s07570 (6:492)	NA	NA	P74476	Peptide chain release factor 2	AT5G36170.1	high chlorophyll fluorescent 109 	LOC_Os07g36250.1	"peptide chain release factor protein, putative, expressed"	Medtr7g090040.1	"Peptide chain release factor 2, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
Ptp.7873.1.S1_at	B	B1S	POPTR_0002s21840	POPTR_0002s21840 (3:560)	NA	NA	Q8L3X9	"3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial"	AT2G04540.1	Beta-ketoacyl synthase 	LOC_Os02g10320.1	"3-oxoacyl-synthase, putative, expressed"	Medtr8g132860.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7878.1.S1_at	B	B1S	POPTR_0008s19860	POPTR_0008s19860 (6:94)	NA	NA	Q9D832	DnaJ homolog subfamily B member 4	AT1G10350.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	AC235756_5.1	Heat shock protein DnaJ AC235756.1 49207-45302 F EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.7879.1.S1_at	B	B1S	POPTR_0015s13800	POPTR_0015s13800 (4:180)	NA	NA	Q8LPQ6	ABC transporter B family member 28	AT4G25450.1	non-intrinsic ABC protein 8 	LOC_Os07g28090.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC229695_27.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 AC229695.5 132649-127780 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.788.1.S1_at	B	B1S	POPTR_0004s21670	POPTR_0004s21670 (8:366)	NA	NA	Q9XGM8	"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase"	AT4G38240.2	"alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative "	LOC_Os02g58590.1	"N-acetylglucosaminyltransferase I, putative, expressed"	Medtr3g164080.1	"Glycosyl transferase, family 13 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003827|""alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity"""	GO:0000139|Golgi membrane
Ptp.7886.1.S1_at	B	B1S	POPTR_0003s14170	POPTR_0003s14170 (0:420)	NA	NA	Q9FLE8	Uncharacterized protein At5g39865	AT1G64500.1	Glutaredoxin family protein 	LOC_Os01g13480.1	"glutaredoxin, putative, expressed"	Medtr7g127470.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.7889.1.S1_at	B	B1S	POPTR_0007s02630	POPTR_0007s02630 (5:296)	NA	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.789.1.S1_at	B	B1S	POPTR_0016s05570	POPTR_0016s05570 (7:333)	NA	NA	Q9LVP0	Probable leucine-rich repeat receptor-like protein kinase At5g63930	AT2G41820.1	Leucine-rich repeat protein kinase family protein 	LOC_Os07g10630.1	expressed protein	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.7896.1.S1_at	B	B1S	POPTR_0010s00700	POPTR_0010s00700 (6:467)	NA	NA	Q8R116	Protein notum homolog	AT5G26670.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g133600.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7897.1.S1_at	B	B1S	POPTR_0002s20700	POPTR_0002s20700 (8:750)	NA	NA	Q7DM58	ABC transporter C family member 4	AT2G47800.1	multidrug resistance-associated protein 4 	LOC_Os01g25386.1	"multidrug resistance-associated protein, putative, expressed"	Medtr1g108540.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.7902.1.S1_at	B	B1S	POPTR_0003s16090	POPTR_0003s16090 (1:362)	NA	NA	Q9LYU3	Ethylene-responsive transcription factor ERF113	AT5G13330.1	related to AP2 6l 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr7g020790.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.7908.1.S1_at	B	B1S	POPTR_0006s03640	POPTR_0006s03640 (6:296)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7914.1.S1_at	B	B1S	POPTR_0003s09980	POPTR_0003s09980 (6:300)	NA	NA	NA	NA	AT4G19040.1	ENHANCED DISEASE RESISTANCE 2 	LOC_Os10g31770.1	"START domain containing protein, expressed"	Medtr5g027400.2	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7916.1.S1_at	B	B1S	POPTR_0005s04800	POPTR_0005s04800 (8:348)	NA	NA	Q05B17	WD repeat-containing protein 48	AT3G05090.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g06810.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g140230.1	WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7917.1.S1_at	B	B1S	POPTR_0004s03360	POPTR_0004s03360 (0:179)	NA	NA	Q41144	Sugar carrier protein C	AT1G11260.1	sugar transporter 1 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr4g124840.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.7933.1.S1_at	B	B1A	POPTR_0004s23630	POPTR_0004s23630 (6:381)	NA	NA	NA	NA	AT4G18530.1	Protein of unknown function (DUF707) 	LOC_Os01g69050.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g005170.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7936.1.S1_at	B	B1S	POPTR_0006s14770	POPTR_0006s14770 (8:489)	NA	NA	NA	NA	AT5G20610.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). 	LOC_Os01g51640.1	expressed protein	Medtr1g019330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7938.1.S1_at	B	B1S	POPTR_0010s07970	POPTR_0010s07970 (7:1496)	NA	NA	Q8S403	Phosphate transporter PHO1	AT3G23430.1	phosphate 1 	LOC_Os02g56510.1	"phosphate transporter 1, putative, expressed"	Medtr1g090210.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
Ptp.7939.1.S1_at	B	B1S	POPTR_0005s20800	POPTR_0005s20800 (8:262)	NA	NA	O49286	F-box/LRR-repeat protein 5	AT1G77000.2	RNI-like superfamily protein 	LOC_Os05g35110.1	"OsFBL22 - F-box domain and LRR containing protein, expressed"	Medtr7g138390.2	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
Ptp.7941.1.S1_at	B	B1A	POPTR_0010s25680	POPTR_0010s25680 (5:210)	NA	NA	NA	NA	AT1G31130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	NA	NA	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7943.1.S1_at	B	B1S	POPTR_0012s04790	POPTR_0012s04790 (0:101)	NA	NA	P29620	Cyclin-dependent kinase D-1	AT1G18040.1	cyclin-dependent kinase D1;3 	LOC_Os05g32600.1	"cyclin-dependent kinase D-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7945.1.S1_at	B	B1S	POPTR_0010s15770	POPTR_0010s15770 (5:1437)	scaffold_10:14885260-14887396(-) (11)	NA	O04425	Flowering time control protein FCA	AT4G16280.2	RNA binding;abscisic acid binding 	LOC_Os09g03610.2	"flowering time control protein FCA, putative, expressed"	Medtr8g136920.1	RNA-binding region RNP-1 (RNA recognition motif); WW/Rsp5/WWP 	NA	GO:0003676|nucleic acid binding||GO:0005515|protein binding	NA
Ptp.7947.1.S1_at	B	B1S	POPTR_0004s04900	POPTR_0004s04900 (7:542)	NA	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.7951.1.S1_at	B	B1S	POPTR_0010s11630	POPTR_0010s11630 (4:126)	NA	NA	Q8LF21	Dynamin-related protein 1C	AT1G14830.1	DYNAMIN-like 1C 	LOC_Os03g50520.1	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.7959.1.S1_s_at	B	B1S	POPTR_0001s21720	POPTR_0001s21720 (4:403)	scaffold_1:20243422-20247338(-) (11)	NA	Q5R977	Protein FAM126B	AT5G64090.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g06860.1	expressed protein	Medtr5g094760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7960.1.A1_at	B	B1S	POPTR_0019s10600	POPTR_0019s10600 (6:579)	NA	NA	Q9FVW3	Probable esterase At1g33990	AT4G09900.1	methyl esterase 12 	LOC_Os08g01850.1	"esterase, putative, expressed"	Medtr3g012890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7965.1.S1_at	B	B1S	POPTR_0005s21110	POPTR_0005s21110 (5:163)	NA	NA	C0LGV1	LRR receptor-like serine/threonine-protein kinase RCH1	AT5G48940.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os04g04330.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g124960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.7967.1.S1_at	B	B1S	POPTR_0003s20440	POPTR_0003s20440 (7:389)	NA	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7971.1.S1_at	B	B1S	POPTR_0005s22640	POPTR_0005s22640 (4:2832)	NA	NA	Q9C8L4	"Hydroxyacylglutathione hydrolase 3, mitochondrial"	AT1G53580.1	glyoxalase II  3 	LOC_Os01g47690.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr5g077130.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7972.1.S1_at	B	B1S	POPTR_0017s10510	POPTR_0017s10510 (6:304)	NA	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G50180.1	Protein kinase superfamily protein 	LOC_Os02g38080.2	"protein kinase domain containing protein, expressed"	Medtr3g114810.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7973.1.S1_at	B	B1S	POPTR_0014s01780	POPTR_0014s01780 (8:1548)	NA	NA	NA	NA	AT1G49890.1	Family of unknown function (DUF566)  	LOC_Os03g10820.1	expressed protein	Medtr1g023430.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7978.1.S1_at	B	B1S	POPTR_0008s08040	POPTR_0008s08040 (8:253)	NA	NA	A4GSN8	Nuclear-pore anchor	AT1G79280.1	nuclear pore anchor 	LOC_Os02g50790.1	"nuclear-pore anchor, putative, expressed"	Medtr2g085400.1	Alkaline phosphatase; Prefoldin; TPR/MLP1/MLP2-like 	GO:0006606|protein import into nucleus	NA	GO:0005643|nuclear pore
Ptp.7981.1.S1_at	B	B1A	POPTR_0003s06980	POPTR_0003s06980 (7:397)	NA	NA	Q9LUM1	Protein LURP-one-related 11	AT3G14260.1	Protein of unknown function (DUF567) 	LOC_Os07g47540.1	"DUF567 domain containing protein, putative, expressed"	Medtr8g026530.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7984.1.S1_at	B	B1S	POPTR_0002s10970	POPTR_0002s10970 (6:401)	NA	NA	Q9STV4	CBL-interacting serine/threonine-protein kinase 8	AT4G24400.1	CBL-interacting protein kinase 8 	LOC_Os01g35184.2	"CAMK_KIN1/SNF1/Nim1_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g076080.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7986.1.S1_at	B	B1S	POPTR_0008s15050	POPTR_0008s15050 (2:228)	NA	NA	Q94AZ2	Sugar transport protein 13	AT5G26340.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.7987.1.S1_at	B	B1S	POPTR_0001s21410	POPTR_0001s21410 (7:229)	NA	NA	Q9SZ67	Probable WRKY transcription factor 19	AT5G64550.1	loricrin-related 	LOC_Os04g54830.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7989.1.S1_at	B	B1S	POPTR_0005s00690	POPTR_0005s00690 (0:7)	scaffold_5:301573-301744(+) (9)	NA	O82491	FACT complex subunit SPT16	AT4G10710.1	global transcription factor C 	LOC_Os04g25550.1	"FACT complex subunit SPT16, putative, expressed"	Medtr3g086680.1	Peptidase M24; 	GO:0009987|cellular process	NA	NA
Ptp.7990.1.A1_at	B	B1S	POPTR_0005s27320	POPTR_0005s27320 (0:469)	NA	NA	P56941	Niemann-Pick C1 protein	AT4G38350.1	Patched family protein 	LOC_Os04g47590.1	"niemann-Pick C1 protein precursor, putative, expressed"	Medtr5g106700.1	Sterol-sensing 5TM box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.80.1.S1_at	B	B1S	POPTR_0009s11580	POPTR_0009s11580 (1:510)	NA	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8002.1.S1_at	B	B1S	POPTR_0013s14160	POPTR_0013s14160 (7:169)	NA	NA	Q96HR8	H/ACA ribonucleoprotein complex non-core subunit NAF1	AT1G03530.1	nuclear assembly factor 1 	LOC_Os05g42300.1	"NAF1 domain containing protein, expressed"	AC229695_14.1	NAF1 AC229695.5 66875-62871 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0019843|rRNA binding	GO:0005732|small nucleolar ribonucleoprotein complex
Ptp.8007.1.S1_at	B	B1S	POPTR_0004s16630	POPTR_0004s16630 (1:146)	NA	NA	Q9SJT1	SUMO-activating enzyme subunit 2	AT2G21470.1	SUMO-activating enzyme 2 	LOC_Os07g39780.2	"SUMO-activating enzyme subunit 2, putative, expressed"	Medtr8g040410.1	SAE2 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
Ptp.801.1.S1_x_at	B	B1S	POPTR_0001s24760	POPTR_0001s24760 (2:198)	NA	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8011.1.S1_at	B	B1S	POPTR_0008s10340	POPTR_0008s10340 (6:479)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8018.2.S1_at	B	B1S	POPTR_0001s35660	POPTR_0001s35660 (7:343)	NA	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os12g19030.1	"copine, putative, expressed"	Medtr6g022780.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8023.1.S1_at	B	B1S	POPTR_0018s03710	POPTR_0018s03710 (7:2702)	NA	NA	NA	NA	AT5G10710.1	"INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g21610.1	expressed protein	Medtr3g133360.1	hypothetical protein 	GO:0051301|cell division||GO:0007059|chromosome segregation	GO:0005515|protein binding	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
Ptp.8026.1.A1_at	B	B1S	POPTR_0001s05480	POPTR_0001s05480 (6:272)	scaffold_1:4198449-4198820(-) (9)	NA	NA	NA	AT4G12070.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g48640.1	expressed protein	Medtr2g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8029.1.S1_at	B	B1S	POPTR_0005s15270	POPTR_0005s15270 (8:534)	NA	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT5G38210.1	Protein kinase family protein 	LOC_Os01g49529.1	"OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.8032.1.A1_at	B	B1S	POPTR_0003s11690	POPTR_0003s11690 (6:289)	NA	NA	Q9FZ06	Armadillo repeat-containing kinesin-like protein 3	AT1G12430.1	armadillo repeat kinesin 3 	LOC_Os06g04560.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.8035.1.S1_at	B	B1S	POPTR_0015s14500	POPTR_0015s14500 (7:334)	NA	NA	Q61189	Methylosome subunit pICln	AT5G62290.2	nucleotide-sensitive chloride conductance regulator (ICln) family protein 	LOC_Os10g08879.1	"nucleotide-sensitive chloride conductance regulator containing protein, expressed"	NA	NA	GO:0006884|cell volume homeostasis||GO:0006821|chloride transport	NA	NA
Ptp.8037.1.S1_at	B	B1S	POPTR_0006s06080	POPTR_0006s06080 (8:253)	NA	NA	NA	NA	AT2G11890.1	adenylate cyclases 	LOC_Os08g20400.1	"adenylate cyclase family protein, expressed"	Medtr8g122220.1	Adenylate cyclase 	GO:0044281|small molecule metabolic process||GO:0006171|cAMP biosynthetic process	GO:0004016|adenylate cyclase activity	NA
Ptp.8048.1.S1_at	B	B1S	POPTR_0007s04710	POPTR_0007s04710 (7:467)	NA	NA	Q38967	Amino acid permease 2	AT5G09220.1	amino acid permease 2 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8049.1.S1_at	B	B1S	POPTR_0004s01650	POPTR_0004s01650 (3:112)	NA	NA	NA	NA	AT1G11655.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8050.1.S1_at	B	B1S	POPTR_0016s09110	POPTR_0016s09110 (5:546)	NA	NA	NA	NA	AT5G03230.1	"Protein of unknown function, DUF584 "	LOC_Os04g43990.1	"DUF584 domain containing protein, putative, expressed"	Medtr4g081830.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8057.1.S1_at	B	B1S	POPTR_0018s13920	POPTR_0018s13920 (8:505)	NA	NA	P48785	Pathogenesis-related homeodomain protein	AT4G29940.1	pathogenesis related homeodomain protein  A 	LOC_Os02g05450.1	"Homeobox domain containing protein, expressed"	Medtr2g042720.1	"Homeobox; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.806.1.S1_at	B	B1S	POPTR_0004s09310	POPTR_0004s09310 (8:934)	scaffold_4:7873237-7874305(+) (11)	NA	Q42572	DNA ligase 1	AT1G66730.1	DNA LIGASE 6 	LOC_Os01g49180.1	"ATP dependent DNA ligase family protein, putative, expressed"	Medtr7g094090.1	"ATP-dependent DNA ligase; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003910|DNA ligase (ATP) activity||GO:0005524|ATP binding	NA
Ptp.8060.1.S1_at	B	B1S	POPTR_0005s26050	POPTR_0005s26050 (7:1003)	NA	NA	P48583	ER lumen protein retaining receptor	AT1G75760.1	ER lumen protein retaining receptor family protein 	LOC_Os08g43470.1	"ER lumen protein retaining receptor, putative, expressed"	Medtr3g156420.1	ER lumen protein retaining receptor; Orn/DAP/Arg decarboxylase 2 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
Ptp.8062.1.S1_at	B	B1S	POPTR_0001s33340	POPTR_0001s33340 (0:566)	NA	NA	Q7G8Y5	Glutaredoxin-C1	AT3G02000.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g027340.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.8064.1.S1_s_at	B	B1S	POPTR_0006s12470	POPTR_0006s12470 (5:202)	scaffold_6:9611906-9612537(+) (11)	NA	D2HWM5	E3 ubiquitin-protein ligase RFWD3	AT5G03450.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g39850.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8068.1.S1_at	B	B1S	POPTR_0001s47130	POPTR_0001s47130 (7:1890)	NA	NA	NA	NA	AT4G26555.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os02g10590.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr3g080010.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.8072.1.A1_at	B	B1S	POPTR_0015s09130	POPTR_0015s09130 (7:395)	NA	NA	Q9SB63	Protein MODIFIER OF SNC1 1	AT4G24680.1	modifier of snc1 	LOC_Os12g37860.1	expressed protein	Medtr3g114390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8074.1.S1_at	B	B1S	POPTR_0006s06990	POPTR_0006s06990 (1:254)	NA	NA	P33083	Auxin-induced protein 6B	AT5G10990.1	SAUR-like auxin-responsive protein family  	LOC_Os02g05060.1	OsSAUR5 - Auxin-responsive SAUR gene family member	Medtr4g160970.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8075.1.A1_at	B	B1S	POPTR_0013s02970	POPTR_0013s02970 (6:320)	NA	NA	NA	NA	AT5G27330.1	Prefoldin chaperone subunit family protein 	NA	NA	Medtr1g098770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8080.1.S1_at	B	B1S	POPTR_0009s09110	POPTR_0009s09110 (7:548)	NA	NA	Q43295	"Adenylyl-sulfate kinase 1, chloroplastic"	AT2G14750.1	APS kinase 	LOC_Os11g41650.2	"adenylyl-sulfate kinase, putative, expressed"	Medtr8g101540.1	Adenylylsulfate kinase 	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.8083.1.S1_at	B	B1S	POPTR_0007s14470	POPTR_0007s14470 (7:485)	NA	NA	Q498M4	WD repeat-containing protein 5	AT3G49660.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g51550.3	"WD repeat-containing protein 5, putative, expressed"	Medtr8g138930.1	"Protein will die slowly, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8084.1.A1_at	B	B1S	POPTR_0001s32030	POPTR_0001s32030 (0:269)	NA	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.8085.1.S1_at	B	B1S	POPTR_0006s07280	POPTR_0006s07280 (8:923)	NA	NA	Q14978	Nucleolar and coiled-body phosphoprotein 1	AT5G57120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink). "	LOC_Os12g41930.1	"SRP40, C-terminal domain containing protein, expressed"	Medtr8g129970.1	"Lissencephaly type-1-like homology motif; SRP40, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8088.1.S1_at	B	B1S	POPTR_0011s01460	POPTR_0011s01460 (8:219)	NA	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT4G22120.6	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
Ptp.809.3.S1_at	B	B1S	POPTR_0003s21680	POPTR_0003s21680 (8:264)	NA	NA	NA	NA	AT5G19900.1	"PRLI-interacting factor, putative "	LOC_Os02g58570.1	"PRLI-interacting factor A, putative, expressed"	Medtr1g146630.1	"PRLI-interacting factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8091.1.S1_at	B	B1S	POPTR_0003s07790	POPTR_0003s07790 (8:412)	NA	NA	Q20390	Palmitoyl-protein thioesterase 1	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g01150.1	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008474|palmitoyl-(protein) hydrolase activity	NA
Ptp.8094.1.S1_at	B	B1S	POPTR_0019s08910	POPTR_0019s08910 (8:596)	NA	NA	Q149N8	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076800.1	"SNF2-related; Zinc finger, RING-type; Claudin tight junction protein; Zinc finger, FYVE/PHD-type; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.8097.1.S1_at	B	B1S	POPTR_0001s36090	POPTR_0001s36090 (7:286)	NA	NA	NA	NA	AT3G27325.2	"hydrolases, acting on ester bonds "	LOC_Os09g09360.1	"esterase/lipase/thioesterase, putative, expressed"	Medtr7g037530.1	PGAP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8099.1.S1_at	B	B1S	POPTR_0002s08090	POPTR_0002s08090 (7:501)	NA	NA	Q9S9N8	Metal transporter Nramp6	AT1G15960.1	NRAMP metal ion transporter 6 	LOC_Os07g15370.1	"metal transporter Nramp6, putative, expressed"	Medtr3g100650.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.8102.1.S1_at	B	B1S	POPTR_0007s01030	POPTR_0007s01030 (8:468)	NA	NA	Q9S7A9	Squamosa promoter-binding-like protein 4	AT1G53160.1	squamosa promoter binding protein-like 4 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr2g017680.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.8103.1.S1_at	B	B1S	POPTR_0013s05680	POPTR_0013s05680 (8:221)	NA	NA	Q9USH8	Glucosidase 2 subunit beta	AT5G56360.1	calmodulin-binding protein 	LOC_Os01g16970.1	"glucosidase II beta subunit-like domain containing protein, expressed"	Medtr4g115150.1	Glucosidase II beta subunit-like 	NA	GO:0005515|protein binding	NA
Ptp.8104.1.S1_at	B	B1S	POPTR_0003s15250	POPTR_0003s15250 (6:467)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8114.1.S1_at	B	B1S	POPTR_0004s09660	POPTR_0004s09660 (7:516)	NA	NA	Q6DEY3	Abhydrolase domain-containing protein FAM108B1	AT5G38220.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g49510.1	"OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g032300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8115.1.S1_at	B	B1S	POPTR_0001s18750	POPTR_0001s18750 (7:77)	NA	NA	Q8HY87	Zinc phosphodiesterase ELAC protein 2	AT3G16260.1	tRNAse Z4 	LOC_Os01g13150.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr2g122460.1	"Hydrolase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8117.1.S1_s_at	B	B1S	POPTR_0013s05370	POPTR_0013s05370 (6:547)	scaffold_13:3835296-3839726(+) (9)	NA	Q93YX4	5'-adenylylsulfate reductase-like 5	AT3G03860.1	APR-like 5 	LOC_Os03g59170.1	"OsAPRL5  adenosine 5'-phosphosulfate reductase-like OsAPRL5, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8119.1.S1_at	B	B1A	POPTR_0018s05830	POPTR_0018s05830 (8:289)	NA	NA	NA	NA	AT4G32350.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os06g47250.1	"DUF292 domain containing protein, expressed"	Medtr4g158790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8121.1.S1_at	B	B1S	POPTR_0001s16360	POPTR_0001s16360 (0:484)	NA	NA	Q54I81	Translation initiation factor eIF-2B subunit alpha	AT1G53900.1	Eukaryotic translation initiation factor 2B (eIF-2B) family protein 	LOC_Os12g31380.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr8g026500.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
Ptp.8127.1.S1_at	B	B1S	POPTR_0001s34720	POPTR_0001s34720 (6:2362)	NA	NA	Q6YYA3	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT3G01370.1	CRM family member 2 	LOC_Os04g39060.1	"CRS1/YhbY domain containing protein, expressed"	Medtr6g009130.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
Ptp.8130.1.S1_at	B	B1S	POPTR_0013s13350	POPTR_0013s13350 (6:273)	NA	NA	NA	NA	AT4G32480.1	Protein of unknown function (DUF506)  	LOC_Os01g54340.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr2g017370.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8138.1.S1_at	B	B1S	POPTR_0006s27250	POPTR_0006s27250 (7:502)	NA	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT2G25320.1	TRAF-like family protein 	LOC_Os02g39990.1	expressed protein	Medtr3g137580.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8140.1.S1_at	B	B1S	POPTR_0014s17160	POPTR_0014s17160 (5:218)	NA	NA	Q0WQ57	Auxilin-related protein 2	AT4G12770.2	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g36180.1	"auxilin, putative, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8143.1.S1_at	B	B1S	POPTR_0011s10150	POPTR_0011s10150 (8:111)	scaffold_11:12752418-12759362(+) (9)	NA	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43700.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.82.1.S1_at	B	B1S	POPTR_0006s11130	POPTR_0006s11130 (8:390)	NA	NA	NA	NA	AT3G08670.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51540.1); Has 48380 Blast hits to 29827 proteins in 1356 species: Archae - 46; Bacteria - 5589; Metazoa - 17361; Fungi - 13192; Plants - 2237; Viruses - 905; Other Eukaryotes - 9050 (source: NCBI BLink). 	LOC_Os01g60309.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g093370.1	"En/Spm-like transposon protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.820.1.A1_at	B	B1S	POPTR_0013s09190	POPTR_0013s09190 (7:1052)	NA	NA	Q8IYD1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	AT1G18070.2	Translation elongation factor EF1A/initiation factor IF2gamma family protein 	LOC_Os04g20220.1	"elongation factor Tu, putative, expressed"	Medtr4g155550.1	"Translation factor; EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.823.1.S1_at	B	B2S	POPTR_0001s17800	POPTR_0001s17800 (7:168)//POPTR_0001s17830 (0:14)	NA	NA	Q5R4J9	"N-alpha-acetyltransferase 15, NatA auxiliary subunit"	AT1G80410.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g43030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g123340.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.826.1.S1_at	B	B9S	POPTR_0011s04810	POPTR_0011s04880 (5:565)//POPTR_0011s04810 (5:565)//POPTR_0412s00210 (3:534)//POPTR_0011s04870 (0:403)//POPTR_0011s04830 (0:390)//POPTR_0011s04820 (0:385)//POPTR_0011s04800 (0:385)//POPTR_0011s04855 (0:209)//POPTR_0011s04850 (0:46)	NA	NA	Q9FZ80	Sulfotransferase 17	AT1G18590.1	sulfotransferase 17 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr8g077540.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
Ptp.830.1.S1_at	B	B3S	POPTR_0001s37160	POPTR_0001s37160 (2:411)//POPTR_0001s37170 (2:401)//POPTR_2051s00200 (1:264)	NA	NA	Q9SZ11	Probable glycerophosphoryl diester phosphodiesterase 2	AT4G26690.1	PLC-like phosphodiesterase family protein 	LOC_Os04g39610.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr5g101680.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.833.1.S1_at	B	B1S	POPTR_0001s26480	POPTR_0001s26480 (2:311)	NA	NA	Q9LXV5	Nuclear transcription factor Y subunit A-1	AT5G12840.4	"nuclear factor Y, subunit A1 "	LOC_Os03g48970.4	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.84.1.A1_at	B	B1S	POPTR_0018s13740	POPTR_0018s13740 (3:112)	NA	NA	P05478	18.5 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.845.1.S1_at	B	B1S	POPTR_0003s06370	POPTR_0003s06370 (7:521)	scaffold_3:7862037-7862573(+) (9)	NA	Q9ZRA4	Auxin-binding protein ABP19a	AT1G72610.1	germin-like protein 1 	LOC_Os08g35760.1	"Cupin domain containing protein, expressed"	Medtr8g024770.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
Ptp.851.1.S1_at	B	B1S	POPTR_0002s10920	POPTR_0002s10920 (7:253)	NA	NA	NA	NA	AT5G64460.8	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr3g127570.1	Phosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.852.1.S1_at	B	B1S	POPTR_0001s45410	POPTR_0001s45410 (8:448)	NA	NA	Q9NQZ5	"StAR-related lipid transfer protein 7, mitochondrial"	AT1G64720.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g02910.1	"membrane related protein CP5, putative, expressed"	Medtr3g122780.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.856.1.S1_at	B	B1S	POPTR_0001s34640	POPTR_0001s34640 (4:299)	NA	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.857.1.S1_at	B	B1S	POPTR_0015s14670	POPTR_0015s14670 (6:505)	NA	NA	P17407	21 kDa protein	AT5G62360.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.86.1.S1_at	B	B1S	POPTR_0016s03570	POPTR_0016s03570 (3:322)	scaffold_16:1917565-1918162(-) (10)	NA	NA	NA	AT1G68060.1	microtubule-associated proteins 70-1 	LOC_Os02g50320.1	"ATMAP70 protein, putative, expressed"	Medtr4g157060.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.862.2.S1_at	B	B2S	POPTR_0004s21970	POPTR_0004s21980 (6:245)//POPTR_0004s21970 (6:245)	NA	NA	Q9SAR5	Ankyrin repeat domain-containing protein 2	AT2G17390.1	ankyrin repeat-containing 2B 	LOC_Os09g33810.2	"ankyrin repeat domain containing protein, putative, expressed"	Medtr3g154100.1	"Ankyrin repeat domain-containing protein 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.866.1.S1_at	B	B1S	POPTR_0007s01110	POPTR_0007s01110 (0:190)	NA	NA	Q9FE67	Ethylene-responsive transcription factor 9	AT5G44210.1	erf domain protein 9 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.867.1.A1_at	B	B1S	POPTR_0003s07080	POPTR_0003s07080 (8:177)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.87.1.A1_s_at	B	B1S	POPTR_0013s07960	POPTR_0013s07960 (7:215)	scaffold_13:6888998-6889394(-) (11)	NA	NA	NA	AT5G17165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03150.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g50970.1	"seed specific protein Bn15D1B, putative, expressed"	Medtr5g008260.1	"seed specific protein Bn15D1B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.870.1.S1_at	B	B1S	POPTR_0007s12070	POPTR_0007s12070 (5:82)	NA	NA	Q40459	"Oxygen-evolving enhancer protein 1, chloroplastic"	AT3G50820.1	photosystem II subunit O-2 	LOC_Os01g31690.1	"oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed"	AC157372_6.1	Photosystem II manganese-stabilizing protein PsbO AC157372.2 27120-29314 F EGN_Mt090430 200	GO:0042549|photosystem II stabilization	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.871.1.S1_at	B	B1S	POPTR_0012s03170	POPTR_0012s03170 (1:128)	NA	NA	P40934	Cytochrome b5	AT5G53560.1	cytochrome B5 isoform E 	LOC_Os10g37420.2	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g123330.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.876.1.A1_at	B	B1S	POPTR_0001s15500	POPTR_0001s15500 (6:645)	NA	NA	Q84JU6	E3 ubiquitin-protein ligase HOS1	AT2G39810.1	ubiquitin-protein ligases 	LOC_Os03g52700.1	expressed protein	Medtr5g013030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.88.1.S1_at	B	B1S	POPTR_0002s16780	POPTR_0002s16780 (1:1281)	scaffold_2:12537627-12539179(-) (10)	NA	Q5RFQ0	rRNA-processing protein FCF1 homolog	AT1G26530.1	PIN domain-like family protein 	LOC_Os06g06410.2	"rRNA-processing protein FCF, putative, expressed"	Medtr7g143410.1	"Nucleotide binding protein, PINc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.886.1.S1_at	B	B1S	POPTR_0001s37200	POPTR_0001s37200 (0:211)	NA	NA	NA	NA	AT5G55530.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os03g09840.2	"C2 domain containing protein, putative, expressed"	Medtr3g076960.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.887.1.S1_at	B	B1S	POPTR_0002s13590	POPTR_0002s13590 (7:444)	NA	NA	Q8SVJ8	Nucleolar GTP-binding protein 1	AT1G80770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g06230.1	"nucleolar GTP-binding protein 1, putative, expressed"	Medtr8g021130.1	"Nucleolar GTP-binding 1; NOG, C-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.888.1.S1_at	B	B2S	POPTR_0006s24850	POPTR_0006s24850 (4:142)//POPTR_0006s24860 (0:21)	NA	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g40818.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.89.1.S1_s_at	B	B1S	POPTR_0004s23900	POPTR_0004s23900 (6:235)	scaffold_4:22533168-22535991(-) (11)	NA	NA	NA	AT1G14450.1	NADH dehydrogenase (ubiquinone)s 	LOC_Os02g35610.1	expressed protein	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity	GO:0005739|mitochondrion
Ptp.892.3.S1_at	B	B1S	POPTR_0004s15440	POPTR_0004s15440 (8:466)	NA	NA	NA	NA	AT2G26500.1	"cytochrome b6f complex subunit (petM), putative "	LOC_Os03g55720.2	"cytochrome b6f complex subunit, putative, expressed"	NA	NA	NA	NA	GO:0009512|cytochrome b6f complex
Ptp.898.1.A1_at	B	B1S	POPTR_0001s27440	POPTR_0001s27440 (7:114)	NA	NA	Q9SZ30	"Imidazole glycerol phosphate synthase hisHF, chloroplastic"	AT4G26900.1	HIS HF 	LOC_Os03g15120.1	"imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.90.1.S1_at	B	B1S	POPTR_0001s34770	POPTR_0001s34770 (0:102)	NA	NA	Q16706	Alpha-mannosidase 2	AT5G14950.1	golgi alpha-mannosidase II 	LOC_Os06g13650.2	"alpha-mannosidase 2, putative, expressed"	Medtr6g009490.1	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0005975|carbohydrate metabolic process	GO:0004559|alpha-mannosidase activity||GO:0008270|zinc ion binding	NA
Ptp.901.1.A1_at	B	B1A	POPTR_0003s19850	POPTR_0003s19850 (2:83)	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
Ptp.903.1.A1_at	B	B1S	POPTR_0014s17660	POPTR_0014s17660 (0:281)	NA	NA	A4R1J7	Protein transport protein SEC23	AT2G21630.1	Sec23/Sec24 protein transport family protein 	LOC_Os08g36994.1	"protein transport protein, putative, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
Ptp.907.1.A1_at	B	B1S	POPTR_0001s19410	POPTR_0001s19410 (7:2665)	NA	NA	NA	NA	AT4G19160.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.909.1.A1_at	B	B1S	POPTR_0012s08100	POPTR_0012s08100 (3:60)	NA	NA	Q8GYT9	E3 ubiquitin-protein ligase SIS3	AT3G47990.1	SUGAR-INSENSITIVE 3 	LOC_Os05g05280.1	"zinc finger family protein, putative, expressed"	Medtr8g125420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.918.1.A1_at	B	B2S	POPTR_0015s06010	POPTR_0016s13080 (0:170)//POPTR_0015s06010 (0:140)	NA	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.928.1.A1_at	B	B1S	POPTR_0009s06080	POPTR_0009s06080 (0:280)	NA	NA	Q0WRX3	Serine carboxypeptidase-like 40	AT3G63470.1	serine carboxypeptidase-like 40 	LOC_Os07g46350.1	"OsSCP40 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr3g040960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.929.1.S1_at	B	B1S	POPTR_0008s20250	POPTR_0008s20250 (0:341)	NA	NA	NA	NA	AT4G02040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.934.1.S1_at	B	B1S	POPTR_0001s24310	POPTR_0001s24310 (7:469)	NA	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT4G13850.4	glycine-rich RNA-binding protein 2 	LOC_Os01g74340.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g078600.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.935.1.A1_at	B	B2S	POPTR_0005s07460	POPTR_0005s07470 (7:907)//POPTR_0005s07460 (7:433)	NA	NA	NA	NA	AT1G71090.1	Auxin efflux carrier family protein 	LOC_Os08g09190.1	"auxin efflux carrier component, putative, expressed"	Medtr5g068420.1	Auxin Efflux Carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.938.1.A1_at	B	B1S	POPTR_0006s23760	POPTR_0006s23760 (0:283)	NA	NA	Q9FUJ1	Cytokinin dehydrogenase 7	AT5G21482.1	cytokinin oxidase 7 	LOC_Os08g35860.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr1g019530.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
Ptp.939.3.A1_at	B	B1S	POPTR_0005s15770	POPTR_0005s15770 (4:299)	NA	NA	Q86IB5	General transcription factor IIH subunit 3	AT1G18340.1	basal transcription factor complex subunit-related 	LOC_Os02g03340.4	"RNA polymerase II transcription factor B subunit 4, putative, expressed"	Medtr3g097520.1	Transcription factor Tfb4 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0016251|general RNA polymerase II transcription factor activity	GO:0000439|core TFIIH complex
Ptp.942.1.S1_at	B	B1S	POPTR_0010s12280	POPTR_0010s12280 (4:2546)	NA	NA	Q55681	ATP-dependent DNA helicase recG	AT2G01440.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os02g48100.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g034620.1	ATP-requiring DNA helicase RecQ 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.954.1.S1_at	B	B1S	POPTR_0009s12830	POPTR_0009s12830 (0:400)	NA	NA	Q6S4P4	Transcription factor RF2b	AT4G38900.3	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g03550.1	"bZIP family transcription factor, putative, expressed"	Medtr4g097530.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.959.1.S1_s_at	B	B1S	POPTR_0012s05780	POPTR_0012s05780 (0:20)	scaffold_12:5598407-5598678(+) (11)	NA	Q3U1Y4	DENN domain-containing protein 4B	AT1G49040.1	stomatal cytokinesis defective / SCD1 protein (SCD1) 	LOC_Os01g39380.1	"SCD1, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.960.1.A1_at	B	B1S	POPTR_0001s38220	POPTR_0001s38220 (6:720)	NA	NA	Q0VC50	"Reticulon-4-interacting protein 1, mitochondrial"	AT3G15090.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os01g54940.1	"dehydrogenase, putative, expressed"	Medtr4g042660.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.97.1.A1_at	B	B1S	POPTR_0010s14670	POPTR_0010s14670 (2:381)	scaffold_10:14197453-14197950(-) (11)	NA	Q5VST6	Abhydrolase domain-containing protein FAM108B1	AT3G30380.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g42730.1	"OsPOP14 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.970.1.A1_at	B	B1S	POPTR_0010s13980	POPTR_0010s13980 (8:510)	NA	NA	Q6NQK2	NAC domain-containing protein 8	AT1G25580.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os06g15690.1	"no apical meristem protein, putative, expressed"	Medtr5g069400.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.973.1.A1_at	B	B1S	POPTR_0007s00740	POPTR_0007s00740 (7:129)	scaffold_7:373742-381523(-) (9)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05675.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os09g34230.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr7g092470.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.974.1.S1_at	B	B1S	POPTR_0007s09720	POPTR_0007s09720 (1:483)	NA	NA	Q9SXL4	Histidine kinase 1	AT2G17820.1	histidine kinase 1 	LOC_Os06g08450.1	"histidine kinase, putative"	Medtr5g022390.1	Response regulator receiver; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.975.1.A1_at	B	B1S	POPTR_0005s09600	POPTR_0005s09600 (5:762)	NA	NA	Q09100	RNA-binding protein rnp24	AT3G18610.1	nucleolin like 2 	LOC_Os04g52960.1	"nucleolin, putative, expressed"	Medtr4g101170.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.983.1.A1_at	B	B8S	POPTR_0003s21980	POPTR_0200s00240 (2:309)//POPTR_0200s00200 (3:307)//POPTR_1037s00200 (3:307)//POPTR_0200s00220 (2:307)//POPTR_0003s21960 (3:307)//POPTR_0003s21950 (1:304)//POPTR_0003s21980 (4:302)//POPTR_0003s21990 (3:296)	NA	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g39930.1	"receptor-like protein kinase, putative"	Medtr2g087870.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.988.1.A1_at	B	B1S	POPTR_0014s15310	POPTR_0014s15310 (3:256)	NA	NA	Q54R82	Mitogen-activated protein kinase kinase kinase A	AT1G05100.1	mitogen-activated protein kinase kinase kinase 18 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr2g104400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.989.1.S1_at	B	B1S	POPTR_0008s04640	POPTR_0008s04640 (5:307)	NA	NA	Q9Z1A9	TBC1 domain family member 8	AT3G55020.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g61860.1	"TBC domain containing protein, expressed"	Medtr1g146610.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.990.1.A1_at	B	B1S	POPTR_0009s10880	POPTR_0009s10880 (0:26)	NA	NA	P53681	CDPK-related protein kinase	AT3G50530.1	CDPK-related kinase 	LOC_Os07g44710.1	"CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g129190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.995.1.A1_at	B	B1S	POPTR_0002s20920	POPTR_0002s20920 (0:53)	NA	NA	NA	NA	AT1G02960.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 100 Blast hits to 99 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 26; Fungi - 13; Plants - 29; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). 	LOC_Os02g48116.1	expressed protein	Medtr3g106950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.996.1.A1_at	B	B1S	POPTR_0002s04660	POPTR_0002s04660 (7:363)	NA	NA	Q99090	Light-inducible protein CPRF2	AT4G02640.1	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.999.1.A1_at	B	B1S	POPTR_0002s09210	POPTR_0002s09210 (7:543)	NA	NA	Q93ZN9	"LL-diaminopimelate aminotransferase, chloroplastic"	AT2G13810.1	AGD2-like defense response protein 1 	LOC_Os03g18810.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr2g008560.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.100040.1.A1_at	B	B1S	POPTR_0010s05250	POPTR_0010s05250 (8:485)	NA	NA	NA	NA	AT1G10660.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 155 Blast hits to 154 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g03790.1	expressed protein	Medtr5g035250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100058.1.A1_at	B	B1S	POPTR_0004s00480	POPTR_0004s00480 (5:334)	NA	NA	Q9ZWQ8	"Plastid-lipid-associated protein, chloroplastic"	AT4G22240.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os09g04790.1	"PAP fibrillin family domain containing protein, expressed"	Medtr2g029130.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.100059.1.A1_at	B	B1S	POPTR_0004s14280	POPTR_0004s14280 (6:142)	NA	NA	Q949R4	"4,5-DOPA dioxygenase extradiol-like protein"	AT4G15093.1	catalytic LigB subunit of aromatic ring-opening dioxygenase family 	LOC_Os01g65680.1	"4,5-DOPA dioxygenase extradiol, putative, expressed"	Medtr6g070870.1	"Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B "	GO:0006725|cellular aromatic compound metabolic process	GO:0008198|ferrous iron binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.100104.1.A1_at	B	B1S	POPTR_0003s19490	POPTR_0003s19490 (1:391)	NA	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G54400.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g46480.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g043180.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10027.1.A1_at	B	B1S	POPTR_0004s12420	POPTR_0004s12420 (8:213)	NA	NA	NA	NA	AT3G29270.2	RING/U-box superfamily protein 	LOC_Os03g31320.2	"RING zinc finger protein-like, putative, expressed"	Medtr6g013870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100271.1.S1_at	B	B1S	POPTR_0015s09920	POPTR_0015s09920 (8:1043)	NA	NA	NA	NA	AT5G63160.1	BTB and TAZ domain protein 1 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr8g109870.1	"Zinc finger, TAZ-type; BTB/POZ; ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.100290.2.S1_at	B	B1S	POPTR_0001s33900	POPTR_0001s33900 (7:386)	scaffold_1:32062984-32063402(-) (11)	NA	Q9LI89	F-box/kelch-repeat protein At3g27150	AT3G27150.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g52830.2	"OsFBK15 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g110510.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100452.1.S1_at	B	B1S	POPTR_0003s09670	POPTR_0003s09670 (5:2004)	scaffold_3:10936114-10938309(+) (10)	NA	Q9C9G6	UPF0195 protein At1g68310	AT1G68310.1	Protein of unknown function (DUF59) 	LOC_Os04g50864.1	expressed protein	Medtr5g028150.1	Protein of unknown function DUF59 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10046.1.S1_at	B	B1S	POPTR_0010s10280	POPTR_0010s10280 (8:1808)	NA	NA	NA	NA	AT1G27000.1	Protein of unknown function (DUF1664) 	LOC_Os05g08980.3	expressed protein	Medtr5g039570.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100598.1.A1_at	B	B1S	POPTR_0006s27970	POPTR_0006s27970 (7:388)	scaffold_6:25852637-25853106(+) (11)	NA	NA	NA	AT4G31805.1	WRKY family transcription factor 	LOC_Os02g55190.1	expressed protein	Medtr3g138280.1	"Glycoside hydrolase, family 22 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100713.1.S1_at	B	B1S	POPTR_0005s24090	POPTR_0005s24090 (5:1019)	NA	NA	Q9SMU7	Signal recognition particle 9 kDa protein	AT3G49100.1	"Signal recognition particle, SRP9/SRP14 subunit "	LOC_Os06g14550.1	"signal recognition particle 9 kDa protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100742.1.S1_at	B	B1S	POPTR_0013s14420	POPTR_0013s14420 (3:150)	scaffold_13:14617506-14617874(-) (11)	NA	NA	NA	AT4G10265.1	Wound-responsive family protein 	LOC_Os04g54240.1	"wound induced protein, putative, expressed"	Medtr2g095480.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100805.1.A1_at	B	B1A	POPTR_0009s02891	POPTR_0009s02891 (1:30)	NA	NA	Q8GX29	F-box/kelch-repeat protein SKIP25	AT1G31350.1	KAR-UP F-box 1 	LOC_Os06g49750.1	"kelch motif family protein, expressed"	Medtr5g026710.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10081.1.A1_at	B	B1S	POPTR_0005s11780	POPTR_0005s11780 (0:254)	NA	NA	Q42064	60S ribosomal protein L8-3	AT4G36130.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr7g084800.1	Elongation factor P-like protein YeiP 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10083.1.A1_at	B	B2S	POPTR_0001s33900	POPTR_0017s09870 (6:447)//POPTR_0001s33900 (7:310)	scaffold_1:32061984-32062508(-) (10)	NA	Q9LI89	F-box/kelch-repeat protein At3g27150	AT3G27150.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g52830.2	"OsFBK15 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g110510.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100917.1.S1_at	B	B1S	POPTR_0010s16900	POPTR_0010s16900 (8:474)	NA	NA	NA	NA	AT2G03390.1	uvrB/uvrC motif-containing protein 	LOC_Os08g07540.1	"hemimethylated DNA binding domain containing protein, expressed"	Medtr5g046350.1	UvrB/UvrC protein; Hemimethylated DNA-binding region 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.100975.1.S1_at	B	B1S	POPTR_0015s03960	POPTR_0015s03960 (8:3196)	NA	NA	NA	NA	AT3G18240.2	"Ribosomal protein S24/S35, mitochondrial "	LOC_Os08g40230.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10103.1.S1_at	B	B1S	POPTR_0002s18330	POPTR_0002s18330 (8:849)	NA	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT5G54130.2	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC233657_18.1	Calcium-binding EF-hand; Endonuclease/exonuclease/phosphatase AC233657.1 101749-97143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101037.1.A1_at	B	B1S	POPTR_0016s02760	POPTR_0016s02760 (1:667)	NA	NA	P11891	"50S ribosomal protein 5, chloroplastic"	NA	NA	NA	NA	Medtr7g105340.1	"Plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101059.1.A1_at	B	B1S	POPTR_0010s07910	POPTR_0010s07910 (8:410)	scaffold_10:8885300-8885846(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101093.1.A1_at	B	B1S	POPTR_0001s18740	POPTR_0001s18740 (1:106)	scaffold_1:15869230-15869838(-) (10)	NA	NA	NA	AT3G16250.1	NDH-dependent cyclic electron flow 1 	LOC_Os07g30670.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr2g122450.1	2Fe-2S Ferredoxin-like fold 	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.101096.1.A1_at	B	B1S	POPTR_0005s09820	POPTR_0005s09820 (5:1155)	NA	NA	P25325	3-mercaptopyruvate sulfurtransferase	AT1G79230.1	mercaptopyruvate sulfurtransferase 1 	LOC_Os12g41500.1	"rhodanese-like domain containing protein, putative, expressed"	AC233682_8.1	Thiosulfate sulfurtransferase AC233682.2 24214-17031 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101212.1.A1_at	B	B1S	POPTR_0007s06050	POPTR_0007s06050 (0:1491)	NA	NA	Q9M5M6	60S ribosomal protein L30	AT1G77940.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101289.1.A1_at	B	B1S	POPTR_0002s04820	POPTR_0002s04820 (5:412)	NA	NA	NA	NA	AT3G63390.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g40200.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101329.1.A1_at	B	B1S	POPTR_0002s10870	POPTR_0002s10870 (0:401)	NA	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.101399.1.A1_at	B	B1S	POPTR_0008s01920	POPTR_0008s01920 (3:271)	NA	NA	Q4QQV8	Charged multivesicular body protein 5	AT3G10640.1	SNF7 family protein 	LOC_Os05g01250.1	"SNF7 domain containing protein, putative, expressed"	Medtr1g112210.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.101422.1.A1_at	B	B1S	POPTR_0017s10760	POPTR_0017s10760 (7:315)	NA	NA	Q9LYJ9	DEAD-box ATP-dependent RNA helicase 46	AT5G14610.2	DEAD box RNA helicase family protein 	LOC_Os01g07740.3	"DEAD-box ATP-dependent RNA helicase 14, putative, expressed"	Medtr6g005450.1	"WW/Rsp5/WWP; Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.101641.1.A1_at	B	B1S	POPTR_0010s09680	POPTR_0010s09680 (3:703)	scaffold_10:10392090-10393427(-) (11)	NA	NA	NA	AT3G22510.1	"Pre-rRNA-processing protein TSR2, conserved region "	LOC_Os08g39820.1	"pre-rRNA-processing protein TSR2, putative, expressed"	Medtr8g047520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101663.1.A1_at	B	B1S	POPTR_0006s24580	POPTR_0006s24580 (7:169)	NA	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G11850.1	Protein kinase superfamily protein 	LOC_Os02g12810.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.101683.1.A1_at	B	B1S	POPTR_0014s17720	POPTR_0014s17720 (4:1292)	NA	NA	O23051	Ent-kaurenoic acid oxidase 1	AT1G05160.1	"cytochrome P450, family 88, subfamily A, polypeptide 3 "	LOC_Os06g02019.1	"cytochrome P450, putative, expressed"	Medtr5g014420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.101694.1.A1_at	B	B1S	POPTR_0007s06720	POPTR_0007s06720 (3:2383)	NA	NA	Q93WU9	Probable WRKY transcription factor 51	AT5G64810.1	WRKY DNA-binding protein 51 	LOC_Os05g46020.1	"OsWRKY7 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g141020.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.101707.1.A1_at	B	B1S	POPTR_0013s14700	POPTR_0013s14700 (6:164)	scaffold_13:14843593-14843831(+) (9)	NA	Q9ZR08	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	AT4G03230.1	S-locus lectin protein kinase family protein 	LOC_Os04g53994.1	"kinase, putative, expressed"	Medtr2g103220.1	"ATP-dependent helicase, DEAD-box; Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101726.1.A1_s_at	B	B1S	POPTR_0018s02800	POPTR_0018s02800 (6:1078)	scaffold_18:2471202-2472339(-) (10)	NA	Q9SM44	"Monogalactosyldiacylglycerol synthase, chloroplastic"	AT4G31780.2	monogalactosyl diacylglycerol synthase 1 	LOC_Os09g25580.1	"monogalactosyldiacylglycerol synthase, putative, expressed"	AC235758_1.1	"Glycosyltransferase 28, C-terminal; Monogalactosyldiacylglycerol synthase AC235758.1 7116-1932 E EGN_Mt090430 200"	GO:0009247|glycolipid biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.101760.1.A1_at	B	B2S	POPTR_0015s05660	POPTR_0015s05660 (8:263)//POPTR_0015s05670 (8:263)	NA	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101911.1.A1_at	B	B1S	POPTR_0014s12810	POPTR_0014s12810 (2:109)	scaffold_14:9441231-9441711(+) (11)	NA	NA	NA	AT3G62920.1	unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g30810.1	expressed protein	Medtr7g129970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101924.1.A1_at	B	B1S	POPTR_0007s05460	POPTR_0007s05460 (0:438)	NA	NA	Q6YC49	UDP-N-acetylglucosamine transporter	AT5G65000.1	Nucleotide-sugar transporter family protein 	LOC_Os02g36390.4	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr5g106860.1	Nucleotide-sugar transporter 	NA	NA	GO:0016020|membrane
PtpAffx.101929.1.A1_at	B	B1S	POPTR_0010s21080	POPTR_0010s21080 (2:40)	scaffold_10:18497714-18498038(-) (10)	NA	B0C9F4	Ribosomal RNA large subunit methyltransferase N	AT2G39670.1	Radical SAM superfamily protein 	LOC_Os01g74190.1	"radical SAM enzyme, putative, expressed"	Medtr5g087280.1	Conserved hypothetical protein 48; Radical SAM 	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.101932.1.A1_at	B	B1S	POPTR_0001s42960	POPTR_0001s42960 (4:1996)	NA	NA	NA	NA	AT1G56000.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g57070.2	"amine oxidase-related, putative, expressed"	Medtr2g077110.1	Amine oxidase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.101981.1.A1_at	B	B1S	POPTR_0024s00430	POPTR_0024s00430 (8:308)	scaffold_24:164939-165353(+) (11)	NA	Q9SL79	"CRS2-associated factor 1, chloroplastic"	AT2G20020.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os01g31110.1	"CRS2-associated factor 1, chloroplast precursor, putative, expressed"	Medtr4g159520.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.101996.1.A1_at	B	B1A	POPTR_0007s09610	POPTR_0007s09610 (3:200)	scaffold_7:9089287-9089729(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102007.1.A1_at	B	B1S	POPTR_0015s07100	POPTR_0015s07100 (3:323)	NA	NA	Q94KT8	Protein COBRA	AT5G60920.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os07g41310.1	"COBRA, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102008.1.A1_at	B	B1A	POPTR_0010s12000	POPTR_0010s12000 (6:391)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102151.1.A1_at	B	B1S	POPTR_0017s08060	POPTR_0017s08060 (4:339)	NA	NA	O04866	"Acetylornithine aminotransferase, mitochondrial"	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.102223.1.A1_at	B	B1S	POPTR_0001s41510	POPTR_0001s41510 (8:1092)	NA	NA	Q2KIY1	Peroxisomal membrane protein 2	AT1G52870.2	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os03g38730.1	"peroxisomal membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.102238.1.A1_at	B	B1S	POPTR_0002s20920	POPTR_0002s20920 (0:137)	NA	NA	NA	NA	AT1G02960.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 100 Blast hits to 99 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 26; Fungi - 13; Plants - 29; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). 	LOC_Os02g48116.1	expressed protein	Medtr3g106950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102255.1.A1_at	B	B1S	POPTR_0014s13250	POPTR_0014s13250 (2:92)	scaffold_14:9767370-9767741(-) (11)	NA	B4GDM7	Probable cytosolic iron-sulfur protein assembly protein Ciao1	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102265.1.S1_at	B	B1S	POPTR_0006s27980	POPTR_0006s27980 (6:273)	scaffold_6:25858809-25859370(+) (11)	NA	P38420	DNA-directed RNA polymerase II subunit RPB2	AT3G23780.2	nuclear RNA polymerase D2A 	LOC_Os04g54840.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr3g138340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.102337.1.A1_at	B	B1S	POPTR_0008s04190	POPTR_0008s04190 (1:161)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.102341.4.A1_at	B	B1S	POPTR_0008s00660	POPTR_0008s00660 (0:273)	NA	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102441.1.S1_at	B	B1S	POPTR_0001s37470	POPTR_0001s37470 (5:157)	NA	NA	NA	NA	AT5G55610.1	"unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os12g31490.1	expressed protein	Medtr4g129710.1	"receptor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102489.1.S1_at	B	B1S	POPTR_0005s10270	POPTR_0005s10270 (7:305)	NA	NA	Q8W2B8	Serine acetyltransferase 4	AT4G35640.1	serine acetyltransferase 3;2 	LOC_Os03g04140.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g023630.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
PtpAffx.102490.1.S1_at	B	B1S	POPTR_0011s10930	POPTR_0011s10930 (2:174)	NA	NA	NA	NA	AT1G53380.3	Plant protein of unknown function (DUF641) 	LOC_Os10g23220.2	"GIL1, putative, expressed"	Medtr2g091750.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102491.1.A1_at	B	B1S	POPTR_0001s12420	POPTR_0001s12420 (8:257)	NA	NA	Q9SYQ8	Receptor protein kinase CLAVATA1	AT4G20270.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g56270.2	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr5g097160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.102503.1.A1_at	B	B1S	POPTR_0001s08470	POPTR_0001s08470 (6:511)	NA	NA	NA	NA	AT4G22920.1	non-yellowing 1 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.1	"senescence-inducible chloroplast stay-green protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102556.1.S1_at	B	B1S	POPTR_0015s06660	POPTR_0015s06660 (8:918)	NA	NA	Q9FNP8	40S ribosomal protein S19-3	AT5G61170.1	Ribosomal protein S19e family protein 	LOC_Os03g31134.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g005130.1	Ribosomal protein S19e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.102571.1.S1_at	B	B1S	POPTR_0016s06230	POPTR_0016s06230 (7:3037)	NA	NA	NA	NA	AT5G06610.1	Protein of unknown function (DUF620) 	LOC_Os03g07120.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102685.1.S1_at	B	B1S	POPTR_0011s14970	POPTR_0011s14970 (4:1199)	NA	NA	O81635	Kinesin-4	AT5G65930.2	kinesin-like calmodulin-binding protein (ZWICHEL) 	LOC_Os04g57140.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g025080.1	"Band 4.1; Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4; Kinesin, motor region; Prismane-like "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	GO:0005856|cytoskeleton
PtpAffx.102687.1.S1_at	B	B1S	POPTR_0001s45040	POPTR_0001s45040 (1:211)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g099510.1	TIR; NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102721.1.S1_at	B	B2S	POPTR_0001s01980	POPTR_0001s01980 (2:2385)//POPTR_0001s01990 (0:282)	scaffold_1:1445196-1448748(-) (11)	NA	NA	NA	AT1G32230.2	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102795.2.A1_at	B	B1S	POPTR_0001s44690	POPTR_0001s44690 (8:591)	NA	NA	NA	NA	AT1G50900.1	Ankyrin repeat family protein 	LOC_Os07g33660.1	expressed protein	Medtr3g020820.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102841.1.S1_at	B	B1S	POPTR_0006s13260	POPTR_0006s13260 (0:267)	NA	NA	NA	NA	AT5G03110.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: protamine P1 family protein (TAIR:AT2G37100.1); Has 81 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g121040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102994.1.S1_at	B	B1S	POPTR_0016s10620	POPTR_0016s10620 (8:481)	NA	NA	Q0DHL4	"ATP-dependent zinc metalloprotease FTSH 8, mitochondrial"	AT1G07510.1	FTSH protease 10 	LOC_Os05g38400.1	"OsFtsH8  FtsH protease, homologue of AtFtsH3/10, expressed"	Medtr4g084650.1	"AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.103.1.A1_at	B	B1S	POPTR_0001s02060	POPTR_0001s02060 (8:242)	NA	NA	Q2KIN1	Dolichol phosphate-mannose biosynthesis regulatory protein	AT1G74340.1	dolichol phosphate-mannose biosynthesis regulatory protein-related 	LOC_Os02g04725.3	"dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed"	Medtr8g077860.1	Dolichol phosphate-mannose biosynthesis regulatory 	GO:0009059|macromolecule biosynthetic process	NA	GO:0030176|integral to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.103018.1.S1_at	B	B1S	POPTR_0014s06760	POPTR_0014s06760 (8:3603)	NA	NA	Q6AZT2	Spastin	AT2G45500.1	AAA-type ATPase family protein 	LOC_Os06g03940.1	"spastin, putative, expressed"	Medtr4g069940.1	"AAA ATPase, central region; MIT "	NA	GO:0005524|ATP binding	NA
PtpAffx.103096.1.S1_at	B	B1S	POPTR_0004s17480	POPTR_0004s17480 (7:476)	NA	NA	NA	NA	AT4G34860.2	Plant neutral invertase family protein 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr3g163240.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103137.1.S1_at	B	B1S	POPTR_0010s24380	POPTR_0010s24380 (7:575)	NA	NA	Q8CIA9	Hippocampus abundant transcript-like protein 1	AT3G20930.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr1g117260.1	Major facilitator superfamily MFS_1 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.103218.1.S1_s_at	B	B1S	POPTR_0018s11140	POPTR_0018s11140 (6:423)	NA	NA	Q91VH1	Adiponectin receptor protein 1	AT4G30850.2	heptahelical transmembrane  protein2 	LOC_Os06g44250.1	"haemolysin-III, putative, expressed"	Medtr8g121650.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
PtpAffx.103337.1.S1_at	B	B1S	POPTR_0010s12660	POPTR_0010s12660 (8:520)	NA	NA	Q8T7K0	ALG-2 interacting protein X	AT1G15130.1	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os10g35250.1	"vacuolar protein-sorting protein bro1, putative, expressed"	Medtr1g137820.1	"ALG2-interacting protein X, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103401.2.S1_at	B	B2S	POPTR_0005s23590	POPTR_0005s23590 (6:376)//POPTR_0284s00200 (5:376)	NA	NA	Q94LX1	"Chlorophyllase-1, chloroplastic"	AT1G19670.1	chlorophyllase 1 	LOC_Os10g28370.1	"chlorophyllase-2, chloroplast precursor, putative, expressed"	Medtr8g096370.1	Chlorophyllase 	GO:0015996|chlorophyll catabolic process	GO:0047746|chlorophyllase activity	NA
PtpAffx.103401.3.A1_at	B	B1S	POPTR_0005s23590	POPTR_0005s23590 (0:463)	NA	NA	Q94LX1	"Chlorophyllase-1, chloroplastic"	AT1G19670.1	chlorophyllase 1 	LOC_Os10g28370.1	"chlorophyllase-2, chloroplast precursor, putative, expressed"	Medtr8g096370.1	Chlorophyllase 	GO:0015996|chlorophyll catabolic process	GO:0047746|chlorophyllase activity	NA
PtpAffx.103410.1.S1_at	B	B1S	POPTR_0001s11860	POPTR_0001s11860 (6:2094)	NA	NA	O81211	Respiratory burst oxidase homolog protein E	AT5G49740.1	ferric reduction oxidase 7 	LOC_Os04g36720.1	"ferric-chelate reductase, putative, expressed"	Medtr2g034110.1	; 	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.103441.2.A1_at	B	B1S	POPTR_0017s05070	POPTR_0017s05070 (0:8)	NA	NA	Q9M1B0	Protein NLP9	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.10346.1.S1_at	B	B1S	POPTR_0014s07420	POPTR_0014s07420 (4:409)	NA	NA	B3H7G2	Ubiquitin-related modifier 1 homolog 2	AT3G61113.1	Ubiquitin related modifier 1 	LOC_Os07g28280.1	"ubiquitin-related modifier 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103471.1.A1_at	B	B1S	POPTR_0008s03990	POPTR_0008s03990 (7:183)	NA	NA	Q8VX13	Protein disulfide isomerase-like 1-3	AT3G54960.1	PDI-like 1-3 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.103522.1.S1_at	B	B1S	POPTR_0002s24780	POPTR_0002s24780 (0:14)	scaffold_2:22048367-22048441(+) (11)	NA	NA	NA	AT3G25130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). 	LOC_Os11g26990.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10355.2.S1_at	B	B1S	POPTR_0012s00700	POPTR_0012s00700 (7:388)	NA	NA	A7QEU4	Peroxidase 5	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os03g02920.1	"peroxidase precursor, putative, expressed"	Medtr3g122440.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.103616.2.S1_at	B	B1S	POPTR_0019s11120	POPTR_0019s11120 (8:355)	scaffold_19:12510623-12511173(-) (10)	NA	Q9C7G4	Transcription factor TCP22	AT1G72010.1	TCP family transcription factor  	LOC_Os12g07480.1	"TCP family transcription factor, putative, expressed"	Medtr2g006520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103620.1.A1_at	B	B1S	POPTR_0008s08080	POPTR_0008s08080 (5:920)	NA	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT1G79380.1	Ca(2)-dependent phospholipid-binding protein (Copine) family 	LOC_Os08g04130.1	"copine-6, putative, expressed"	Medtr6g093150.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.103624.1.A1_at	B	B1S	POPTR_0015s00650	POPTR_0015s00650 (6:364)	NA	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT5G54130.2	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr3g122310.1	Endonuclease/exonuclease/phosphatase; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103655.1.A1_at	B	B1S	POPTR_0001s27310	POPTR_0001s27310 (8:374)	NA	NA	Q70Z53	Protein FRA10AC1	AT4G15030.1	CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits to 5700 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses - 76; Other Eukaryotes - 2900 (source: NCBI BLink). 	LOC_Os11g42000.1	"FRA10AC1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103679.1.A1_at	B	B1S	POPTR_0013s13730	POPTR_0013s13730 (4:281)	NA	NA	Q12955	Ankyrin-3	AT1G03670.1	ankyrin repeat family protein 	LOC_Os05g35310.1	"ankyrin repeat family protein, putative"	Medtr5g092930.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103697.1.A1_at	B	B1S	POPTR_0006s28030	POPTR_0006s28030 (0:199)	NA	NA	Q5RDY2	Transmembrane 9 superfamily member 4	AT5G10840.1	Endomembrane protein 70 protein family 	LOC_Os09g38530.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr1g016840.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.103701.1.A1_at	B	B1S	POPTR_0001s14040	POPTR_0001s14040 (0:77)	NA	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.103751.1.A1_at	B	B1S	POPTR_0006s00580	POPTR_0006s00580 (5:150)	NA	NA	NA	NA	AT5G47740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os06g18820.1	"serine threonine kinase, putative, expressed"	AC233669_2.1	hypothetical protein AC233669.2 8999-10267 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10376.2.S1_at	B	B1S	POPTR_0014s14270	POPTR_0014s14270 (8:1332)	NA	NA	O23653	"Aspartokinase 2, chloroplastic"	AT5G14060.2	Aspartate kinase family protein 	LOC_Os07g20544.1	"aspartokinase, chloroplast precursor, putative, expressed"	Medtr7g096930.1	Aspartate kinase region 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0016597|amino acid binding	NA
PtpAffx.103774.1.A1_at	B	B1S	POPTR_0003s09680	POPTR_0003s09680 (7:530)	NA	NA	P24521	Phosphomevalonate kinase	AT1G31910.1	GHMP kinase family protein 	LOC_Os03g14830.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr3g124290.1	Phosphomevalonate kinase Erg8; GHMP kinase; ; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.103799.1.A1_at	B	B1S	POPTR_0001s30160	POPTR_0001s30160 (7:302)	NA	NA	O80977	Vacuolar-sorting receptor 3	AT2G14740.2	vaculolar sorting receptor 3 	LOC_Os10g20630.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103804.1.A1_at	B	B1S	POPTR_0001s04320	POPTR_0001s04320 (7:519)	NA	NA	P93756	G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1	AT2G41890.1	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr7g110670.1	"Apple; Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.103824.1.A1_at	B	B1S	POPTR_0007s06930	POPTR_0007s06930 (0:308)	NA	NA	Q9SVB7	Probable WRKY transcription factor 13	AT4G39410.1	WRKY DNA-binding protein 13 	LOC_Os01g08710.1	"OsWRKY79 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g144590.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.103837.1.S1_at	B	B1S	POPTR_0012s13290	POPTR_0012s13290 (0:106)	NA	NA	P93471	E3 ubiquitin-protein ligase COP1	AT5G23730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g02380.1	"suppressor of phythchrome A, putative"	Medtr5g092630.1	"Zinc finger, RING-type; WD40-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103891.1.A1_at	B	B1S	POPTR_0014s08890	POPTR_0014s08890 (5:275)	scaffold_14:6568615-6569154(+) (10)	NA	Q9M310	F-box/kelch-repeat protein At3g61590	AT3G61590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g47050.1	"OsFBK1 - F-box domain and kelch repeat containing protein, expressed"	AC233577_25.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central AC233577.5 125790-127178 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10393.3.S1_at	B	B1S	POPTR_0002s09770	POPTR_0002s09770 (6:125)	NA	NA	P93212	14-3-3 protein 7	AT1G26480.1	general regulatory factor 12 	LOC_Os03g50290.3	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.103933.1.S1_at	B	B1S	POPTR_0016s14130	POPTR_0016s14130 (0:430)	NA	NA	Q9SRK7	Adenine/guanine permease AZG1	AT3G10960.1	AZA-guanine resistant1 	LOC_Os05g26840.1	"permease domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103977.1.S1_at	B	B1S	POPTR_0005s26880	POPTR_0005s26880 (7:262)	NA	NA	Q3MIT2	Putative tRNA pseudouridine synthase Pus10	AT1G20410.1	Pseudouridine synthase family protein 	LOC_Os04g47380.1	"coiled-coil domain-containing protein 139, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103981.1.S1_at	B	B1S	POPTR_0001s38260	POPTR_0001s38260 (3:3125)	NA	NA	NA	NA	AT5G46020.1	"CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g54920.1	"heat- and acid-stable phosphoprotein, putative, expressed"	Medtr2g018420.1	"28 kDa heat- and acid-stable phosphoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10405.2.A1_at	B	B1S	POPTR_0009s11500	POPTR_0009s11500 (4:253)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10405.2.A1_x_at	B	B1S	POPTR_0009s11500	POPTR_0009s11500 (5:308)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10405.4.A1_at	B	B2S	POPTR_0014s11550	POPTR_0014s11550 (2:301)//POPTR_0014s11560 (2:301)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10405.6.A1_at	B	B1S	POPTR_0009s11500	POPTR_0009s11500 (5:474)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104155.1.S1_at	B	B1S	POPTR_0001s30440	POPTR_0001s30440 (8:915)	NA	NA	O81760	Probable protein phosphatase 2C 63	AT4G33920.1	Protein phosphatase 2C family protein 	LOC_Os12g39120.1	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104314.1.S1_at	B	B1S	POPTR_0005s11110	POPTR_0005s11110 (0:141)	NA	NA	Q9ZVX8	Probable aquaporin PIP2-8	AT2G16850.1	plasma membrane intrinsic protein 2;8 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.10434.1.S1_at	B	B1S	POPTR_0007s13810	POPTR_0007s13810 (8:1529)	NA	NA	Q9NQE7	Thymus-specific serine protease	AT4G36195.3	Serine carboxypeptidase S28 family protein 	LOC_Os10g36760.1	"OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr5g021450.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.10446.1.S1_at	B	B1S	POPTR_0001s11430	POPTR_0001s11430 (6:449)	NA	NA	P05522	Endoglucanase 1	AT1G02800.1	cellulase 2 	LOC_Os08g02220.1	"endoglucanase, putative, expressed"	Medtr3g163060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.10446.1.S1_x_at	B	B1S	POPTR_0001s11430	POPTR_0001s11430 (8:519)	NA	NA	P05522	Endoglucanase 1	AT1G02800.1	cellulase 2 	LOC_Os08g02220.1	"endoglucanase, putative, expressed"	Medtr3g163060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.10446.2.S1_at	B	B1S	POPTR_0003s14740	POPTR_0003s14740 (6:272)	NA	NA	P05522	Endoglucanase 1	AT1G02800.1	cellulase 2 	LOC_Os08g02220.1	"endoglucanase, putative, expressed"	Medtr4g157670.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.104534.1.S1_at	B	B1S	POPTR_0018s06380	POPTR_0018s06380 (7:370)	NA	NA	NA	NA	AT2G26900.1	Sodium Bile acid symporter family 	LOC_Os01g45750.1	"bile acid sodium symporter family protein, putative, expressed"	Medtr8g118790.2	Bile acid:sodium symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104546.2.S1_at	B	B1S	POPTR_0012s14240	POPTR_0012s14240 (0:173)	NA	NA	Q8VYR9	K(+) efflux antiporter 5	AT5G51710.2	K+ efflux antiporter 5 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr4g160810.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.104559.1.S1_at	B	B1S	POPTR_0006s19560	POPTR_0006s19560 (2:1782)	NA	NA	NA	NA	AT4G30710.1	Family of unknown function (DUF566)  	LOC_Os02g55110.1	expressed protein	Medtr8g144970.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104635.1.S1_at	B	B1S	POPTR_0013s11800	POPTR_0013s11800 (6:369)	NA	NA	NA	NA	AT1G34550.1	Protein of unknown function (DUF616) 	LOC_Os11g09170.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	AC146568_8.1	Protein of unknown function DUF616 AC146568.11 42302-43568 E EGN_Mt090430 200	NA	GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.104654.1.S1_at	B	B1S	POPTR_0014s13060	POPTR_0014s13060 (5:480)	NA	NA	B0G143	Mitochondrial substrate carrier family protein ucpB	AT4G03115.1	Mitochondrial substrate carrier family protein 	LOC_Os12g34870.2	"mitochondrial carrier protein, putative, expressed"	Medtr1g112070.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104662.1.S1_at	B	B1S	POPTR_0010s12440	POPTR_0010s12440 (4:3438)	NA	NA	P07788	Spore coat protein A	AT1G23010.1	Cupredoxin superfamily protein 	LOC_Os01g03530.2	"multicopper oxidase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104683.1.S1_at	B	B1S	POPTR_0013s14560	POPTR_0013s14560 (6:1747)	NA	NA	Q7XBH4	Myb-related protein Myb4	AT2G31180.1	myb domain protein 14 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr2g103070.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10469.2.S1_at	B	B1S	POPTR_0003s21030	POPTR_0003s21030 (6:536)	NA	NA	Q54S20	Mediator of RNA polymerase II transcription subunit 13	AT1G55325.2	RNA polymerase II transcription mediators 	LOC_Os05g37500.1	expressed protein	Medtr3g105710.1	Rhodopsin-like GPCR superfamily; TRAP240 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104834.1.S1_s_at	B	B1S	POPTR_0010s25430	POPTR_0010s25430 (6:208)	scaffold_10:21116148-21116573(+) (10)	NA	Q80Y81	Zinc phosphodiesterase ELAC protein 2	AT3G16260.1	tRNAse Z4 	LOC_Os01g13150.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr2g122460.1	"Hydrolase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104915.1.S1_at	B	B1S	POPTR_0015s04850	POPTR_0015s04850 (8:958)	scaffold_15:5036956-5037947(-) (9)	NA	NA	NA	AT1G18280.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g47200.1	"LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr6g083240.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104965.1.S1_at	B	B1S	POPTR_0004s01100	POPTR_0004s01100 (7:138)	NA	NA	A7YWI9	Tyrosyl-DNA phosphodiesterase 2	AT1G11800.1	endonuclease/exonuclease/phosphatase family protein 	LOC_Os12g22620.1	"endonuclease/Exonuclease/phosphatase family protein, expressed"	Medtr8g146980.1	"Zinc finger, RanBP2-type; Endonuclease/exonuclease/phosphatase "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1050.1.S1_at	B	B1S	POPTR_0011s09280	POPTR_0011s09280 (7:886)	scaffold_11:11499508-11500850(+) (11)	NA	NA	NA	AT1G50710.1	unknown protein; Has 109 Blast hits to 109 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g02690.1	expressed protein	Medtr3g068800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105095.1.S1_at	B	B1S	POPTR_0015s09580	POPTR_0015s09580 (5:446)	NA	NA	NA	NA	AT4G24700.1	unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g38170.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105151.1.S1_at	B	B1S	POPTR_0014s15610	POPTR_0014s15610 (8:2056)	NA	NA	Q9SHZ3	Nucleobase-ascorbate transporter 1	AT2G05760.1	Xanthine/uracil permease family protein 	LOC_Os09g15170.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr3g109940.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.105181.1.S1_at	B	B1S	POPTR_0009s05270	POPTR_0009s05270 (0:102)	NA	NA	Q9SR43	"Phytochromobilin:ferredoxin oxidoreductase, chloroplastic"	AT3G09150.2	"phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) "	LOC_Os01g72090.1	"phycoerythrobilin ferredoxin oxidoreductase, putative, expressed"	Medtr5g104730.1	Ferredoxin-dependent bilin reductase 	GO:0010024|phytochromobilin biosynthetic process||GO:0055114|oxidation reduction	"GO:0016636|""oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor""||GO:0050897|cobalt ion binding"	NA
PtpAffx.105205.1.S1_at	B	B1S	POPTR_0008s03560	POPTR_0008s03560 (7:310)	NA	NA	Q8VZ40	U-box domain-containing protein 14	AT3G54850.1	plant U-box 14 	LOC_Os06g01304.2	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.105260.2.S1_a_at	B	B1S	POPTR_0002s04390	POPTR_0002s04390 (7:310)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105261.1.S1_at	B	B1S	POPTR_0010s03980	POPTR_0010s03980 (2:883)	NA	NA	Q8WTR2	Dual specificity protein phosphatase 19	AT3G23610.2	dual specificity protein phosphatase 1 	LOC_Os01g29469.1	"dual specificity protein phosphatase, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.105282.1.S1_at	B	B1S	POPTR_0002s24780	POPTR_0002s24780 (0:186)	NA	NA	NA	NA	AT3G25130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). 	LOC_Os11g26990.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105289.1.S1_at	B	B1S	POPTR_0005s14690	POPTR_0005s14690 (1:71)	NA	NA	NA	NA	AT3G28540.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr6g010230.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105308.1.S1_at	B	B1S	POPTR_0015s11020	POPTR_0015s11020 (8:247)	NA	NA	NA	NA	AT3G48660.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105347.1.S1_at	B	B1S	POPTR_0013s14360	POPTR_0013s14360 (6:376)	NA	NA	NA	NA	AT4G28230.1	unknown protein; Has 444 Blast hits to 358 proteins in 107 species: Archae - 0; Bacteria - 20; Metazoa - 179; Fungi - 26; Plants - 38; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink). 	NA	NA	Medtr3g005120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105366.1.S1_at	B	B1S	POPTR_0004s16530	POPTR_0004s16530 (8:119)	NA	NA	Q7FGZ2	DEAD-box ATP-dependent RNA helicase 1	AT4G15850.1	RNA helicase 1 	LOC_Os02g55260.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g085470.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.105386.1.S1_at	B	B1S	POPTR_0007s10700	POPTR_0007s10700 (3:289)	NA	NA	Q54RA4	Probable iron/ascorbate oxidoreductase DDB_G0283291	AT3G50210.3	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os09g07020.1	"oxidoreductase, putative, expressed"	Medtr4g128850.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.105429.1.S1_at	B	B1S	POPTR_0013s11990	POPTR_0013s11990 (6:316)	NA	NA	A4IIS8	Multidrug and toxin extrusion protein 1	AT1G71870.1	MATE efflux family protein 	LOC_Os03g62270.1	"MATE efflux family protein, putative, expressed"	Medtr5g076410.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.105507.1.S1_at	B	B4S	POPTR_0019s01460	POPTR_0019s01340 (5:617)//POPTR_0121s00210 (6:617)//POPTR_0019s01420 (5:617)//POPTR_0019s01460 (6:617)	NA	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	LOC_Os02g02930.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.105555.1.S1_at	B	B1S	POPTR_0014s01680	POPTR_0014s01680 (6:439)	NA	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT3G03990.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g10620.3	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g023380.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105751.1.S1_at	B	B1S	POPTR_0009s00760	POPTR_0009s00760 (8:259)	NA	NA	P93231	Vacuolar protein sorting-associated protein 41 homolog	AT1G08190.1	vacuolar protein sorting 41 	LOC_Os04g11880.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	NA
PtpAffx.105864.1.A1_at	B	B1S	POPTR_0001s01510	POPTR_0001s01510 (7:260)	NA	NA	NA	NA	AT4G19040.1	ENHANCED DISEASE RESISTANCE 2 	LOC_Os10g31770.1	"START domain containing protein, expressed"	Medtr5g027400.2	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105894.1.S1_at	B	B1S	POPTR_0010s06840	POPTR_0010s06840 (8:493)	NA	NA	Q9C9N5	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830	AT1G67510.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g19490.1	expressed protein	Medtr7g076330.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105921.1.S1_at	B	B1S	POPTR_0796s00200	POPTR_0796s00200 (8:449)	NA	NA	NA	NA	AT4G04340.1	ERD (early-responsive to dehydration stress) family protein 	LOC_Os05g51630.2	"early-responsive to dehydration protein-related, putative, expressed"	Medtr8g147230.1	Protein of unknown function DUF221 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10596.1.A1_at	B	B1S	POPTR_0017s12160	POPTR_0017s12160 (7:415)	NA	NA	Q9MAC5	Polypyrimidine tract-binding protein homolog 1	AT3G01150.1	polypyrimidine tract-binding protein 1 	LOC_Os08g33830.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr3g124540.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.105987.1.S1_at	B	B1S	POPTR_0013s07280	POPTR_0013s07280 (8:533)	NA	NA	Q9P6P3	Serine/threonine-protein kinase ppk15	AT5G35980.1	yeast YAK1-related gene 1 	LOC_Os02g47410.2	"protein kinase, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.105990.1.S1_at	B	B1S	POPTR_0013s11000	POPTR_0013s11000 (8:419)	NA	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.2	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106008.1.S1_at	B	B1S	POPTR_0010s02440	POPTR_0010s02440 (2:63)	scaffold_10:2830698-2831171(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106035.1.S1_at	B	B1S	POPTR_0018s13850	POPTR_0018s13850 (4:981)	NA	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23440.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.106070.1.S1_at	B	B1S	POPTR_0008s16670	POPTR_0008s16670 (7:372)	NA	NA	O48905	"Malate dehydrogenase, cytoplasmic"	AT5G43330.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr1g042850.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.106075.1.S1_at	B	B1S	POPTR_0016s06530	POPTR_0016s06530 (5:370)	NA	NA	NA	NA	AT5G06560.1	"Protein of unknown function, DUF593 "	LOC_Os12g30500.1	"DUF593 domain containing protein, expressed"	Medtr8g144910.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106102.1.S1_at	B	B1S	POPTR_0168s00220	POPTR_0168s00220 (0:22)	NA	NA	O64416	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT5G38410.3	Ribulose bisphosphate carboxylase (small chain) family protein 	LOC_Os02g05830.1	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr8g129230.1	"Ribulose bisphosphate carboxylase, small chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
PtpAffx.106129.1.S1_at	B	B1S	POPTR_0016s10920	POPTR_0016s10920 (4:560)	NA	NA	NA	NA	AT1G32700.1	PLATZ transcription factor family protein 	LOC_Os02g46610.1	"zinc-binding protein, putative, expressed"	Medtr1g074250.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.106139.1.S1_at	B	B1S	POPTR_0006s09260	POPTR_0006s09260 (6:364)	NA	NA	Q8LG95	Pentatricopeptide repeat-containing protein At4g21190	AT1G04590.1	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os12g02950.1	"EMB2748, putative, expressed"	Medtr5g012280.1	"pentatricopeptide repeat-containing protein {Ara, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106196.1.S1_at	B	B1S	POPTR_0019s02570	POPTR_0019s02570 (0:10)	NA	NA	P13087	Miraculin	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.106262.1.A1_at	B	B1S	POPTR_0013s13530	POPTR_0013s13530 (6:350)	scaffold_13:13981302-13981837(+) (11)	NA	Q9Y7P0	Riboflavin synthase alpha chain	AT2G20690.1	lumazine-binding family protein 	LOC_Os12g35580.1	"riboflavin synthase alpha chain, putative, expressed"	Medtr4g078830.1	Lumazine-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106266.1.S1_at	B	B2A	POPTR_0003s22330	POPTR_0003s22330 (4:412)//POPTR_0003s22360 (4:406)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106297.1.A1_at	B	B1S	POPTR_0001s11830	POPTR_0001s11830 (8:480)	NA	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	Medtr5g006070.1	BTB/POZ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106302.1.A1_at	B	B2S	POPTR_0011s00240	POPTR_0021s00250 (6:490)//POPTR_0011s00240 (6:490)	NA	NA	O65456	Probable pectate lyase 16	AT4G22080.1	root hair specific 14 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g147150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106308.1.A1_at	B	B1S	POPTR_0013s11300	POPTR_0013s11300 (2:456)	NA	NA	Q8VHT7	Transcription factor IIIA	AT1G72050.2	transcription factor IIIA 	LOC_Os05g03020.1	"ZOS5-03 - C2H2 zinc finger protein, expressed"	Medtr3g005750.1	"Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.106353.1.A1_at	B	B1S	POPTR_0006s08500	POPTR_0006s08500 (7:444)	NA	NA	Q5BKT4	"Alpha-1,2-glucosyltransferase ALG10-A"	AT5G02410.1	DIE2/ALG10 family 	LOC_Os04g42490.1	"DIE2/ALG10 family, putative, expressed"	Medtr7g067880.1	DIE2/ALG10 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
PtpAffx.106356.1.S1_at	B	B1S	POPTR_0005s15830	POPTR_0005s15830 (0:316)	NA	NA	Q9SFE4	Ethylene-responsive transcription factor ERF012	AT1G21910.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g10780.1	"AP2 domain containing protein, expressed"	Medtr5g065700.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.106439.1.A1_at	B	B1S	POPTR_0013s13900	POPTR_0013s13900 (6:453)	NA	NA	Q91YR7	Pre-mRNA-processing factor 6	AT4G03430.1	pre-mRNA splicing factor-related 	LOC_Os10g35550.1	"pre-mRNA-processing factor 6, putative, expressed"	Medtr1g013230.1	"PRP1 splicing factor, N-terminal "	"GO:0044260|cellular macromolecule metabolic process||GO:0000398|""nuclear mRNA splicing, via spliceosome"""	NA	GO:0005634|nucleus
PtpAffx.106453.1.A1_at	B	B1S	POPTR_0013s06210	POPTR_0013s06210 (0:0)	NA	NA	Q9SYG9	Cation/calcium exchanger 4	AT5G17850.1	Sodium/calcium exchanger family protein 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr7g103490.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.10648.1.S1_a_at	B	B1S	POPTR_0005s02390	POPTR_0005s02390 (8:63)	NA	NA	Q9M9W3	Serine/threonine-protein phosphatase PP1 isozyme 9	AT5G27840.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g24750.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g138660.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.10648.2.S1_at	B	B1S	POPTR_0005s02390	POPTR_0005s02390 (2:345)	NA	NA	Q9M9W3	Serine/threonine-protein phosphatase PP1 isozyme 9	AT5G27840.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g24750.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g138660.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.10648.3.A1_at	B	B1S	POPTR_0005s02390	POPTR_0005s02390 (6:396)	NA	NA	Q9M9W3	Serine/threonine-protein phosphatase PP1 isozyme 9	AT5G27840.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g24750.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g138660.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.106480.1.A1_at	B	B1S	POPTR_0010s19530	POPTR_0010s19530 (7:170)	NA	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g03640.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g094020.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.106482.1.A1_at	B	B1S	POPTR_0001s06350	POPTR_0001s06350 (8:487)	NA	NA	Q8S3N1	E3 ubiquitin-protein ligase SINAT5	AT3G61790.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os07g46560.1	"seven in absentia protein family domain containing protein, expressed"	Medtr3g020180.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.106502.1.A1_at	B	B1S	POPTR_0002s25030	POPTR_0002s25030 (0:310)	NA	NA	Q11066	Uncharacterized HIT-like protein Rv1262c/MT1300	AT5G48545.1	histidine triad nucleotide-binding 3 	LOC_Os11g18990.1	"histidine triad family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106525.1.A1_at	B	B1S	POPTR_0007s13060	POPTR_0007s13060 (5:991)	NA	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G66530.2	Galactose mutarotase-like superfamily protein 	LOC_Os09g15820.1	"aldose 1-epimerase, putative, expressed"	Medtr5g020530.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.106543.1.A1_at	B	B1S	POPTR_0014s06890	POPTR_0014s06890 (8:74)	NA	NA	Q6L545	Gibberellin receptor GID1	AT2G45600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g14730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr8g150910.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.1066.12.A1_at	B	B1S	POPTR_0017s14100	POPTR_0017s14100 (0:207)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1066.8.S1_at	B	B2S	POPTR_0012s14780	POPTR_0015s14960 (6:1292)//POPTR_0012s14780 (6:1244)	NA	NA	Q93Y22	Coatomer subunit delta	AT5G05010.2	clathrin adaptor complexes medium subunit family protein 	LOC_Os05g24601.1	"coatomer subunit delta, putative, expressed"	Medtr2g122280.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.1066.9.S1_at	B	B1S	POPTR_0017s14100	POPTR_0017s14100 (0:446)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106674.1.S1_at	B	B1S	POPTR_0002s20200	POPTR_0002s20200 (7:1563)	NA	NA	Q54FU9	Mitochondrial substrate carrier family protein W	AT2G47490.1	NAD+ transporter 1 	LOC_Os05g28870.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g068050.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106697.1.S1_at	B	B2S	POPTR_0012s01530	POPTR_0015s02250 (4:2450)//POPTR_0012s01530 (8:2002)	scaffold_12:1151616-1155220(+) (10)	NA	Q9FGL9	Polypyrimidine tract-binding protein homolog 2	AT5G53180.1	polypyrimidine tract-binding protein 2 	LOC_Os01g43170.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr3g124540.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106853.1.S1_at	B	B1S	POPTR_0002s13740	POPTR_0002s13740 (8:399)	NA	NA	NA	NA	AT3G60380.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink). 	NA	NA	Medtr8g105280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1071.1.A1_s_at	B	B1S	POPTR_0006s24950	POPTR_0006s24950 (1:187)	scaffold_6:23440960-23441208(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1071.1.A1_x_at	B	B1S	POPTR_0006s24950	POPTR_0006s24950 (5:192)	scaffold_6:23440858-23441213(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1072.1.S1_at	B	B1S	POPTR_0001s28460	POPTR_0001s28460 (2:324)	scaffold_1:27227140-27227697(-) (11)	NA	Q5RCP3	"N-alpha-acetyltransferase 38, NatC auxiliary subunit"	AT1G65700.2	Small nuclear ribonucleoprotein family protein 	LOC_Os05g51650.1	"LSM domain containing protein, expressed"	Medtr1g103330.1	"Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107223.1.S1_at	B	B1S	POPTR_0001s03950	POPTR_0001s03950 (0:88)	NA	NA	O65351	Subtilisin-like protease	AT4G26330.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os03g06290.1	"OsSub27 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.107265.1.S1_at	B	B1S	POPTR_0006s05870	POPTR_0006s05870 (8:505)	NA	NA	P46379	Large proline-rich protein BAT3	AT5G25270.1	Ubiquitin-like superfamily protein 	LOC_Os08g19830.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107310.1.S1_at	B	B1S	POPTR_0001s41010	POPTR_0001s41010 (7:359)	scaffold_1:40631815-40632800(-) (10)	NA	NA	NA	AT4G27500.1	proton pump interactor 1 	LOC_Os08g30060.2	"proton pump interactor, putative, expressed"	Medtr2g100530.1	"proton pump interactor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107314.1.A1_at	B	B1S	POPTR_0008s12850	POPTR_0008s12850 (2:1147)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107372.1.S1_at	B	B2S	POPTR_0005s08570	POPTR_0007s06510 (1:1830)//POPTR_0005s08570 (4:895)	NA	NA	Q9SIZ8	E3 ubiquitin-protein ligase RKP	AT2G22010.2	related to KPC1 	LOC_Os07g43380.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g144940.1	"Zinc finger, RING-type; B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107388.1.A1_at	B	B1S	POPTR_0008s11590	POPTR_0008s11590 (1:39)	scaffold_8:7384321-7384745(+) (11)	NA	NA	NA	AT1G25570.1	Di-glucose binding protein with Leucine-rich repeat domain 	LOC_Os01g04720.1	"leucine-rich repeat protein-related, putative, expressed"	Medtr5g069200.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107388.2.A1_at	B	B1S	POPTR_0010s13950	POPTR_0010s13950 (4:1671)	scaffold_10:13646242-13648204(-) (9)	NA	C0LGL4	Probable LRR receptor-like serine/threonine-protein kinase At2g28960	AT1G25570.1	Di-glucose binding protein with Leucine-rich repeat domain 	LOC_Os01g04720.1	"leucine-rich repeat protein-related, putative, expressed"	Medtr5g069200.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.107419.1.S1_at	B	B1S	POPTR_0012s13050	POPTR_0012s13050 (4:156)	NA	NA	NA	NA	AT3G49050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.107431.1.A1_at	B	B1S	POPTR_0008s15400	POPTR_0008s15400 (8:552)	scaffold_665:674-1308(+) (10)//scaffold_8:10255760-10256394(-) (10)	NA	NA	NA	AT1G05430.1	unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g29502.1	expressed protein	Medtr5g006520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107445.1.A1_at	B	B1S	POPTR_0003s08660	POPTR_0003s08660 (7:494)	NA	NA	Q9FUR2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 2"	AT4G18010.2	myo-inositol polyphosphate 5-phosphatase 2 	LOC_Os01g51890.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr5g014290.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10748.1.A1_at	B	B1S	POPTR_0001s08950	POPTR_0001s08950 (8:335)	NA	NA	NA	NA	AT4G11670.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107516.1.A1_at	B	B1S	POPTR_0009s06820	POPTR_0009s06820 (8:292)	scaffold_9:6515757-6516087(+) (10)	NA	NA	NA	AT3G12650.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g48680.1	expressed protein	Medtr8g037260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107571.1.A1_at	B	B3S	POPTR_0001s16270	POPTR_0001s16270 (1:366)//POPTR_0018s12530 (1:354)//POPTR_0001s16280 (1:137)	NA	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.107572.1.A1_at	B	B1S	POPTR_0002s23140	POPTR_0002s23140 (1:746)	NA	NA	Q0WMN5	Uncharacterized protein At3g49135	AT3G59300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g67370.1	expressed protein	Medtr5g097250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107573.1.A1_at	B	B1S	POPTR_0001s16700	POPTR_0001s16700 (8:434)	NA	NA	Q54DU5	von Willebrand factor A domain-containing protein DDB_G0292028	AT1G72500.1	"LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: inter-alpha-trypsin inhibitor heavy chain-related (TAIR:AT1G19110.1); Has 1407 Blast hits to 1406 proteins in 307 species: Archae - 6; Bacteria - 522; Metazoa - 484; Fungi - 59; Plants - 110; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). "	LOC_Os07g42280.1	"von Willebrand factor type A domain containing protein, expressed"	Medtr4g128920.1	"von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107574.1.S1_at	B	B1S	POPTR_0005s15820	POPTR_0005s15820 (0:703)	NA	NA	Q6J163	Auxin-induced protein 5NG4	AT4G08290.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097620.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.107606.1.A1_at	B	B1A	POPTR_0003s17080	POPTR_0003s17080 (1:54)	NA	NA	NA	NA	AT1G67330.1	Protein of unknown function (DUF579) 	LOC_Os11g29780.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g103910.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107706.1.A1_at	B	B1S	POPTR_0001s18300	POPTR_0001s18300 (5:323)	NA	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.10771.4.S1_at	B	B1S	POPTR_0002s03390	POPTR_0002s03390 (1:828)	NA	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107734.1.A1_at	B	B1S	POPTR_0009s05080	POPTR_0009s05080 (8:457)	NA	NA	NA	NA	AT5G58730.1	pfkB-like carbohydrate kinase family protein 	LOC_Os03g52760.1	"kinase, pfkB family, putative, expressed"	Medtr5g078830.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107833.1.A1_at	B	B1S	POPTR_0003s21540	POPTR_0003s21540 (0:14)	NA	NA	Q10PP8	Metal tolerance protein 4	AT3G58060.1	Cation efflux family protein 	LOC_Os03g12530.1	"cation efflux family protein, putative, expressed"	Medtr3g083790.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.10786.2.A1_at	B	B1S	POPTR_0005s18830	POPTR_0005s18830 (7:245)	scaffold_5:17147417-17148203(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107894.2.A1_at	B	B1S	POPTR_0001s13680	POPTR_0001s13680 (4:157)	scaffold_1:10771967-10772294(-) (11)	NA	NA	NA	AT3G48660.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107898.1.A1_at	B	B1S	POPTR_0004s01950	POPTR_0004s01950 (0:414)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.1079.1.A1_at	B	B1S	POPTR_0010s25950	POPTR_0010s25950 (0:195)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107907.1.A1_at	B	B1S	POPTR_0001s35760	POPTR_0001s35760 (2:289)	NA	NA	Q8VYR5	"Pentatricopeptide repeat-containing protein At4g35850, mitochondrial"	AT4G35850.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g05320.1	"PPR repeat domain containing protein, putative, expressed"	Medtr6g022770.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107921.1.A1_at	B	B1S	POPTR_0018s09330	POPTR_0018s09330 (8:772)	NA	NA	Q8LGU6	Cell division cycle protein 27 homolog B	AT2G20000.1	CDC27  family protein 	LOC_Os06g41750.1	"tetratricopeptide repeat domain containing protein, expressed"	AC233572_1.1	Tetratricopeptide-like helical; AC233572.2 2-8768 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107970.1.A1_at	B	B1S	POPTR_0001s14000	POPTR_0001s14000 (5:196)	scaffold_1:11030813-11031118(+) (9)	NA	Q54GB2	CTD small phosphatase-like protein 2	AT5G11860.4	SCP1-like small phosphatase 5 	LOC_Os07g10690.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr3g103740.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108152.1.A1_at	B	B1S	POPTR_0015s04390	POPTR_0015s04390 (0:244)	NA	NA	NA	NA	AT1G48620.1	high mobility group A5 	LOC_Os05g51850.1	"AT hook-containing DNA-binding protein, putative, expressed"	Medtr4g155220.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.108197.1.A1_at	B	B1S	POPTR_0010s20700	POPTR_0010s20700 (0:1440)	NA	NA	Q9LMK0	60S ribosomal protein L35a-1	AT1G07070.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.108420.1.A1_at	B	B1S	POPTR_0004s14460	POPTR_0004s14460 (8:987)	scaffold_4:15030952-15032721(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108428.1.A1_at	B	B1S	POPTR_0010s10970	POPTR_0010s10970 (2:199)	scaffold_10:11372389-11374276(-) (10)	NA	P0C042	Uncharacterized protein At4g15970	AT1G14590.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os04g49590.1	"regulatory protein, putative, expressed"	Medtr1g039640.1	"Uncharacterized protein At4g15970, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108515.1.A1_at	B	B1S	POPTR_0013s11060	POPTR_0013s11060 (0:339)	NA	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108534.1.A1_at	B	B1S	POPTR_0014s14200	POPTR_0014s14200 (0:382)	NA	NA	P51090	Chalcone synthase	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004315|3-oxoacyl-[acyl-carrier-protein] synthase activity	NA
PtpAffx.108673.1.A1_at	B	B1S	POPTR_0013s05280	POPTR_0013s05280 (2:54)	scaffold_13:3745839-3746282(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G03810.1	O-fucosyltransferase family protein 	LOC_Os05g04190.2	"growth regulator related protein, putative, expressed"	Medtr1g008430.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108729.1.A1_at	B	B1A	POPTR_0015s06510	POPTR_0015s06510 (1:303)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108734.1.A1_at	B	B1S	POPTR_0004s03240	POPTR_0004s03240 (0:235)	NA	NA	NA	NA	AT4G05120.1	Major facilitator superfamily protein 	LOC_Os07g37100.2	"nucleoside transporter, putative, expressed"	Medtr2g103000.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
PtpAffx.108908.1.S1_at	B	B1S	POPTR_0001s05140	POPTR_0001s05140 (8:1683)	NA	NA	NA	NA	AT5G19630.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g48590.1	expressed protein	Medtr4g141640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108979.1.S1_at	B	B1S	POPTR_0030s00390	POPTR_0030s00390 (4:88)	NA	NA	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os12g42980.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.1090.1.A1_at	B	B1S	POPTR_0001s10980	POPTR_0001s10980 (1:393)	NA	NA	Q6AZT7	Nephrocystin-3	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01960.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109015.1.S1_at	B	B1S	POPTR_0018s07000	POPTR_0018s07000 (8:452)	NA	NA	O14638	Ectonucleotide pyrophosphatase/phosphodiesterase family member 3	AT4G29680.1	Alkaline-phosphatase-like family protein 	LOC_Os01g10020.1	"ectonucleotide pyrophosphatase/phosphodiesterase family member 1, putative, expressed"	Medtr4g160930.1	Alkaline phosphatase; Type I phosphodiesterase/nucleotide pyrophosphatase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.10911.2.A1_at	B	B1S	POPTR_0001s41340	POPTR_0001s41340 (6:129)	NA	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g58170.1	"stem-specific protein TSJT1, putative, expressed"	Medtr2g014830.1	"Stem-specific protein TSJT1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109372.1.S1_at	B	B1S	POPTR_0001s34110	POPTR_0001s34110 (5:400)	NA	NA	Q94IG7	"Protoporphyrinogen oxidase, chloroplastic/mitochondrial"	AT5G14220.1	Flavin containing amine oxidoreductase family 	LOC_Os04g41260.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr8g142180.1	Protoporphyrinogen oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.10942.2.S1_at	B	B1S	POPTR_0018s13870	POPTR_0018s13870 (2:236)	NA	NA	Q9LL84	DNA ligase 4	AT5G57160.1	DNA ligase IV 	LOC_Os04g51700.1	"DNA ligase I, ATP-dependent family protein, expressed"	Medtr2g042770.1	"ATP-dependent DNA ligase; BRCT; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003910|DNA ligase (ATP) activity||GO:0005524|ATP binding	GO:0005622|intracellular
PtpAffx.10949.1.A1_at	B	B1A	POPTR_0010s05320	POPTR_0010s05320 (0:218)	scaffold_10:6776005-6776526(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109740.1.S1_at	B	B1S	POPTR_0011s15690	POPTR_0011s15690 (7:554)	NA	NA	Q14008	Cytoskeleton-associated protein 5	AT2G35630.1	ARM repeat superfamily protein 	LOC_Os01g60040.2	"HEAT repeat family protein, putative, expressed"	Medtr8g026460.1	VHS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109747.1.S1_at	B	B1S	POPTR_0001s03330	POPTR_0001s03330 (7:349)	NA	NA	NA	NA	AT2G24100.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109748.1.S1_at	B	B1S	POPTR_0007s04070	POPTR_0007s04070 (8:515)	NA	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G53570.4	mitogen-activated protein kinase kinase kinase 3 	LOC_Os11g10100.1	"STE_MEKK_ste11_MAP3K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g143420.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.109764.1.S1_at	B	B1S	POPTR_0005s23630	POPTR_0005s23630 (2:1827)	NA	NA	Q8RXY0	Probable inactive protein kinase At3g63330	AT3G63340.1	Protein phosphatase 2C family protein 	LOC_Os11g37540.1	"protein phosphatase 2C, putative, expressed"	Medtr1g083790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.109772.1.S1_at	B	B1S	POPTR_0014s16070	POPTR_0014s16070 (4:291)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109785.1.S1_at	B	B1S	POPTR_0002s20980	POPTR_0002s20980 (8:694)	NA	NA	Q8L725	Metal tolerance protein C1	AT2G47830.1	Cation efflux family protein 	LOC_Os03g22550.1	"cation efflux family protein, putative, expressed"	NA	NA	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.1099.3.S1_at	B	B1S	POPTR_0018s00830	POPTR_0018s00830 (0:63)	NA	NA	Q8LFH7	60S ribosomal protein L37-1	AT1G15250.1	Zinc-binding ribosomal protein family protein 	LOC_Os02g56990.1	"ribosomal protein L37, putative, expressed"	Medtr4g009180.1	Ribosomal protein L37e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.109925.1.A1_at	B	B1S	POPTR_0001s04490	POPTR_0001s04490 (8:729)	NA	NA	P53797	"Phytoene synthase, chloroplastic"	AT5G17230.2	PHYTOENE SYNTHASE 	LOC_Os06g51290.3	"phytoene synthase, chloroplast precursor, putative, expressed"	Medtr3g105590.1	Ribosomal protein S2; Squalene/phytoene synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.109956.1.A1_s_at	B	B1S	POPTR_0002s11540	POPTR_0002s11540 (2:271)	scaffold_2:8596565-8597095(-) (10)	NA	Q6NKN9	Transcription factor bHLH74	AT1G10120.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os06g16400.2	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g077090.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.109960.1.S1_at	B	B1S	POPTR_0011s15520	POPTR_0011s15520 (0:101)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109980.1.A1_at	B	B1S	POPTR_0016s07510	POPTR_0016s07510 (8:663)	NA	NA	Q42966	Bifunctional nitrilase/nitrile hydratase NIT4B	AT5G22300.1	nitrilase 4 	LOC_Os02g42350.1	"nitrilase, putative, expressed"	Medtr1g146400.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.110042.1.A1_at	B	B1S	POPTR_0014s07740	POPTR_0014s07740 (3:287)	NA	NA	B0X1Q4	CAP10 family protein CPIJ013394	AT2G45830.1	downstream target of AGL15 2 	LOC_Os02g42920.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110084.1.A1_at	B	B1S	POPTR_0003s18970	POPTR_0003s18970 (3:2067)	NA	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11009.2.S1_at	B	B1S	POPTR_0012s02130	POPTR_0012s02130 (8:740)	NA	NA	NA	NA	AT5G53420.1	CCT motif family protein 	LOC_Os05g51690.1	"CCT motif family protein, expressed"	Medtr1g009330.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110114.1.A1_at	B	B1A	POPTR_0015s05140	POPTR_0015s05140 (8:515)	NA	NA	Q09690	Dual specificity protein kinase pom1	AT1G73460.1	Protein kinase superfamily protein 	LOC_Os03g51020.1	expressed protein	Medtr6g078370.1	"protein kinase family protein, related "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.110115.1.A1_at	B	B1S	POPTR_0005s08470	POPTR_0005s08470 (7:445)	NA	NA	Q0WR59	Probable inactive receptor kinase At5g10020	AT5G10020.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g43350.1	expressed protein	Medtr3g145010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.110138.1.A1_at	B	B1S	POPTR_0009s16210	POPTR_0009s16210 (0:83)	NA	NA	NA	NA	AT5G22340.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g20640.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110158.1.S1_at	B	B1S	POPTR_0003s15810	POPTR_0003s15810 (0:171)	NA	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G47910.1	respiratory burst oxidase homologue D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.110165.1.A1_at	B	B1S	POPTR_0005s06870	POPTR_0005s06870 (2:116)	NA	NA	Q9FY89	Vacuolar protein sorting-associated protein 20 homolog 2	AT5G09260.1	vacuolar protein sorting-associated protein 20.2 	LOC_Os02g38300.1	"SNF7 domain containing protein, putative, expressed"	Medtr3g142880.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.110185.1.S1_at	B	B1S	POPTR_0003s17850	POPTR_0003s17850 (6:277)	NA	NA	P52948	Nuclear pore complex protein Nup98-Nup96	AT1G80680.1	SUPPRESSOR OF AUXIN RESISTANCE 3 	LOC_Os03g07580.1	"OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed"	Medtr5g105600.1	"Peptidase S59, nucleoporin "	GO:0006810|transport	NA	GO:0005643|nuclear pore
PtpAffx.110199.1.S1_at	B	B1S	POPTR_0004s07800	POPTR_0004s07800 (6:326)	NA	NA	NA	NA	AT4G25670.2	"unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2). "	LOC_Os06g01770.2	expressed protein	Medtr1g126490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110205.1.S1_at	B	B1S	POPTR_0007s11970	POPTR_0007s11970 (6:431)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110233.1.S1_at	B	B1S	POPTR_0016s00880	POPTR_0016s00880 (3:316)	NA	NA	NA	NA	AT4G16400.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110243.1.S1_at	B	B1S	POPTR_0010s16385	POPTR_0010s16385 (7:542)	NA	NA	NA	NA	AT1G69160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 173 Blast hits to 172 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 33; Plants - 84; Viruses - 2; Other Eukaryotes - 29 (source: NCBI BLink). 	NA	NA	Medtr5g049030.1	"F4N2.12, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110303.1.S1_at	B	B1S	POPTR_0017s11240	POPTR_0017s11240 (3:2309)	NA	NA	Q9C952	Cleavage and polyadenylation specificity factor subunit 3-I	AT1G61010.3	cleavage and polyadenylation specificity factor 73-I 	LOC_Os03g63590.1	"metallo-beta-lactamase, putative, expressed"	Medtr2g006480.1	Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110357.1.S1_at	B	B1S	POPTR_0012s11280	POPTR_0012s11280 (5:535)	NA	NA	NA	NA	AT5G07330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g32890.1	expressed protein	Medtr5g006680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11040.2.A1_at	B	B1S	POPTR_0011s03140	POPTR_0011s03140 (8:1085)	NA	NA	Q40872	Floral homeotic protein AGAMOUS	AT4G18960.1	K-box region and MADS-box transcription factor family protein  	LOC_Os01g10504.1	"OsMADS3 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g136380.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.110425.1.A1_at	B	B1S	POPTR_0015s10060	POPTR_0015s10060 (6:219)	scaffold_15:11101937-11102321(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110428.1.S1_at	B	B1S	POPTR_0001s32750	POPTR_0001s32750 (8:2260)	NA	NA	Q84LH3	Werner Syndrome-like exonuclease	AT4G13870.2	Werner syndrome-like exonuclease 	LOC_Os04g03990.1	"3-5 exonuclease domain-containing protein, putative, expressed"	Medtr3g104890.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11043.1.A1_at	B	B1S	POPTR_0019s00590	POPTR_0019s00590 (4:409)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g035220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11064.3.S1_at	B	B1S	POPTR_0011s04480	POPTR_0011s04480 (8:493)	NA	NA	NA	NA	AT4G21620.1	glycine-rich protein 	LOC_Os03g47270.1	"GCRP4 - Glycine and cysteine rich family protein precursor, expressed"	Medtr2g014240.1	"Glycine-rich protein DC9.1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11068.1.S1_at	B	B1S	POPTR_0015s13030	POPTR_0015s13030 (8:518)	NA	NA	NA	NA	AT1G01730.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g085210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11077.2.S1_at	B	B1S	POPTR_0002s19630	POPTR_0002s19630 (8:1016)	NA	NA	Q93WV5	Probable WRKY transcription factor 69	AT3G58710.2	WRKY DNA-binding protein 69 	LOC_Os02g47060.1	"OsWRKY66 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g133050.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.11077.3.S1_at	B	B1S	POPTR_0002s19630	POPTR_0002s19630 (3:619)	NA	NA	Q93WV5	Probable WRKY transcription factor 69	AT3G58710.2	WRKY DNA-binding protein 69 	LOC_Os02g47060.1	"OsWRKY66 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g133050.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.110824.1.S1_at	B	B1S	POPTR_0006s28210	POPTR_0006s28210 (6:233)	NA	NA	Q6GR43	Transmembrane protein 85	AT5G10780.1	"CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g24580.1	"transmembrane protein 85, putative, expressed"	Medtr1g016570.1	Protein of unknown function DUF1077 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110830.1.S1_at	B	B1S	POPTR_0005s22400	POPTR_0005s22400 (8:520)	NA	NA	NA	NA	AT2G42900.1	Plant basic secretory protein (BSP) family protein 	LOC_Os05g50500.1	"secretory protein, putative, expressed"	Medtr3g062170.1	Plant Basic Secretory Protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110877.1.S1_s_at	B	B2S	POPTR_0011s14240	POPTR_0011s14240 (7:594)//POPTR_0011s14250 (0:13)	scaffold_11:16728352-16729123(+) (11)	NA	Q94738	97 kDa heat shock protein	AT1G11660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os06g46600.1	"DnaK family protein, putative, expressed"	Medtr5g099870.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110935.1.S1_at	B	B1S	POPTR_0010s14740	POPTR_0010s14740 (7:2852)	NA	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os09g29930.2	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.110935.2.S1_at	B	B1S	POPTR_0008s11120	POPTR_0008s11120 (8:2543)	NA	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os09g29930.2	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.11094.1.A1_at	B	B1S	POPTR_0016s14320	POPTR_0016s14320 (4:388)	NA	NA	Q9SG96	RING-H2 finger protein ATL72	AT3G10910.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr7g080330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110954.2.S1_at	B	B1S	POPTR_0018s01680	POPTR_0018s01680 (4:416)	NA	NA	Q3E958	Ethylene-responsive transcription factor SHINE 3	AT5G25390.2	Integrase-type DNA-binding superfamily protein 	LOC_Os02g10760.1	"AP2 domain containing protein, expressed"	Medtr8g120410.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.11100.1.S1_x_at	B	B1S	POPTR_0008s13440	POPTR_0008s13440 (5:558)	NA	NA	Q8GUU2	E3 ubiquitin protein ligase RIE1	AT1G68070.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os04g48050.1	"RING zinc finger protein, putative, expressed"	Medtr4g157080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111009.1.S1_at	B	B1S	POPTR_0010s15640	POPTR_0010s15640 (5:871)	NA	NA	P52046	3-hydroxybutyryl-CoA dehydratase	AT4G16210.1	enoyl-CoA hydratase/isomerase A 	LOC_Os03g19680.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g137400.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11110.1.A1_at	B	B1S	POPTR_0009s01690	POPTR_0009s01690 (7:448)	NA	NA	Q9FS88	"Isovaleryl-CoA dehydrogenase 1, mitochondrial"	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.2	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.11112.1.A1_at	B	B1A	POPTR_0011s14650	POPTR_0011s14650 (6:65)	NA	NA	Q6NVR9	ATPase family AAA domain-containing protein 3	AT5G16930.1	AAA-type ATPase family protein 	LOC_Os02g46990.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g107260.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.11119.1.A1_at	B	B2S	POPTR_0001s22090	POPTR_0001s22090 (2:993)//POPTR_0135s00200 (0:908)	NA	NA	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os11g05760.1	"OsProCP5 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.1112.2.S1_at	B	B1S	POPTR_0001s08840	POPTR_0001s08840 (6:777)	NA	NA	Q6GQ69	FAS-associated factor 2-B	AT4G11740.1	Ubiquitin-like superfamily protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111226.1.S1_at	B	B1S	POPTR_0013s07540	POPTR_0013s07540 (4:2310)	NA	NA	Q9FKJ0	F-box/kelch-repeat protein At5g60570	AT5G60570.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g52830.2	"OsFBK15 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g110510.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11123.1.A1_at	B	B1S	POPTR_0014s10200	POPTR_0014s10200 (1:2309)	NA	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT2G46820.2	photosystem I P subunit 	LOC_Os07g28610.2	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111305.1.S1_at	B	B1S	POPTR_0010s10300	POPTR_0010s10300 (5:538)	NA	NA	P00693	Alpha-amylase type A isozyme	AT1G69830.1	alpha-amylase-like 3 	LOC_Os01g51754.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
PtpAffx.111310.1.S1_at	B	B1S	POPTR_0010s22170	POPTR_0010s22170 (7:321)	NA	NA	Q32LH4	Nitrilase homolog 1	AT4G08790.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein 	LOC_Os12g31830.1	"nitrilase, putative, expressed"	Medtr1g146400.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.111323.1.S1_at	B	B1S	POPTR_0006s20340	POPTR_0006s20340 (0:333)	NA	NA	Q10710	Sugar carrier protein A	AT4G02050.1	sugar transporter protein 7 	LOC_Os09g24924.1	"transporter family protein, putative, expressed"	Medtr8g122780.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.111335.1.S1_at	B	B1S	POPTR_0001s24240	POPTR_0001s24240 (0:36)	NA	NA	NA	NA	AT5G59790.1	Domain of unknown function (DUF966) 	LOC_Os01g62200.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g078980.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111349.1.S1_at	B	B1S	POPTR_0014s14150	POPTR_0014s14150 (3:769)	NA	NA	Q9S7I6	LRR receptor-like serine/threonine-protein kinase RPK2	AT3G02130.1	receptor-like protein kinase 2 	LOC_Os07g41140.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g097270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.111387.1.S1_at	B	B1S	POPTR_0016s00860	POPTR_0016s00860 (7:500)	NA	NA	Q8GWE0	"Pentatricopeptide repeat-containing protein At4g16390, chloroplastic"	AT4G16390.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os03g11670.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr8g148450.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111416.1.S1_at	B	B1S	POPTR_0005s07050	POPTR_0005s07050 (1:149)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111457.1.S1_at	B	B1S	POPTR_0003s16230	POPTR_0003s16230 (0:130)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111492.1.S1_at	B	B1S	POPTR_0005s04230	POPTR_0005s04230 (6:133)	NA	NA	NA	NA	AT5G27330.1	Prefoldin chaperone subunit family protein 	NA	NA	Medtr1g098770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111499.1.S1_at	B	B3S	POPTR_0012s06340	POPTR_0012s06360 (5:1884)//POPTR_0012s06340 (6:1706)//POPTR_0012s06350 (6:1706)	NA	NA	O23049	"50S ribosomal protein L6, chloroplastic"	AT1G05190.1	Ribosomal protein L6 family 	LOC_Os03g54040.1	"ribosomal protein L6, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.1115.1.A1_at	B	B1S	POPTR_0006s12140	POPTR_0006s12140 (7:747)	scaffold_6:9300078-9303385(+) (11)	NA	NA	NA	AT5G51200.1	Protein of unknown function (DUF3414) 	NA	NA	Medtr7g118310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111507.1.S1_at	B	B1S	POPTR_0007s12670	POPTR_0007s12670 (6:238)	NA	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os03g56500.1	expressed protein	Medtr2g037610.2	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111543.1.S1_at	B	B1S	POPTR_0008s19530	POPTR_0008s19530 (3:160)	NA	NA	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.1	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.111597.1.S1_at	B	B1S	POPTR_0005s27150	POPTR_0005s27150 (7:292)	NA	NA	Q5XGY1	Pre-rRNA-processing protein TSR1 homolog	AT1G42440.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). "	LOC_Os11g19250.1	"AARP2CN domain containing protein, expressed"	Medtr4g092630.2	AARP2CN 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
PtpAffx.111637.1.S1_at	B	B1S	POPTR_0001s00720	POPTR_0001s00720 (8:439)	NA	NA	Q0V8M0	Protein KRI1 homolog	AT3G24080.2	KRR1 family protein 	LOC_Os05g41100.1	"protein kri1, putative, expressed"	Medtr2g129820.1	Krr1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1117.1.A1_at	B	B1S	POPTR_0010s22130	POPTR_0010s22130 (5:1040)	scaffold_10:19151660-19155547(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11182.1.A1_at	B	B1S	POPTR_0005s04270	POPTR_0005s04270 (7:418)	scaffold_5:2867317-2867822(+) (9)	NA	NA	NA	AT5G27290.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g28540.1	"stress regulated protein, putative, expressed"	Medtr7g139860.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112004.1.S1_at	B	B1S	POPTR_0007s12360	POPTR_0007s12360 (7:533)	NA	NA	NA	NA	AT4G36790.1	Major facilitator superfamily protein 	LOC_Os07g10820.1	"transporter-related, putative, expressed"	Medtr5g019400.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112049.1.S1_at	B	B1S	POPTR_0004s05870	POPTR_0004s05870 (7:354)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11205.1.A1_at	B	B1S	POPTR_0004s00720	POPTR_0004s00720 (8:169)	NA	NA	P12617	"Malonyl-CoA decarboxylase, mitochondrial"	AT4G04320.1	malonyl-CoA decarboxylase family protein 	LOC_Os09g23070.1	"malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0050080|malonyl-CoA decarboxylase activity	NA
PtpAffx.112081.1.S1_at	B	B1S	POPTR_0018s13600	POPTR_0018s13600 (8:344)	NA	NA	Q9SV15	Probable WRKY transcription factor 11	AT4G31550.1	WRKY DNA-binding protein 11 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr8g130290.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.1121.1.A1_at	B	B1S	POPTR_0001s06750	POPTR_0001s06750 (0:279)	NA	NA	Q0WVD6	Probable protein arginine N-methyltransferase 3	AT3G12270.1	protein arginine methyltransferase 3 	LOC_Os07g44640.1	"ZOS7-13 - C2H2 zinc finger protein, expressed"	Medtr3g005500.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.112212.1.S1_at	B	B1S	POPTR_0002s12770	POPTR_0002s12770 (0:463)	NA	NA	Q9LJK2	Abscisic acid 8'-hydroxylase 4	AT3G19270.1	"cytochrome P450, family 707, subfamily A, polypeptide 4 "	LOC_Os09g28390.1	"cytochrome P450, putative, expressed"	Medtr1g024340.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.112232.2.S1_at	B	B1S	POPTR_0006s27310	POPTR_0006s27310 (8:162)	NA	NA	Q03730	Uncharacterized vacuolar membrane protein YML018C	AT4G32140.1	EamA-like transporter family 	LOC_Os04g55260.1	"thiamine-repressible mitochondrial transport protein THI74, putative, expressed"	Medtr7g064590.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112267.1.S1_at	B	B1S	POPTR_0001s17320	POPTR_0001s17320 (7:512)	NA	NA	P59271	Ubiquitin-40S ribosomal protein S27a-1	AT1G15420.1	"CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). "	LOC_Os01g46060.1	"NUC189 domain containing protein, expressed"	Medtr5g035270.1	Ubiquitin; Ribosomal protein S27a 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.112304.2.S1_at	B	B1S	POPTR_0012s01640	POPTR_0012s01640 (8:456)	NA	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112311.1.S1_at	B	B1S	POPTR_0015s08770	POPTR_0015s08770 (6:311)	NA	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT3G48190.1	ataxia-telangiectasia mutated 	LOC_Os01g01689.3	"phosphatidylinositol 3- and 4-kinase family protein, expressed"	Medtr3g113790.1	"PIK-related kinase, FATC; "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.112326.1.S1_at	B	B1S	POPTR_0006s26410	POPTR_0006s26410 (6:117)	NA	NA	O04706	Gibberellin 20 oxidase 1-B	AT1G52820.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr1g013100.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.112378.1.S1_at	B	B1S	POPTR_0001s22200	POPTR_0001s22200 (8:327)	NA	NA	Q9C585	Ubiquitin carboxyl-terminal hydrolase 8	AT5G22030.1	ubiquitin-specific protease 8 	LOC_Os07g06610.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.112384.1.S1_at	B	B1S	POPTR_0018s10300	POPTR_0018s10300 (2:210)	NA	NA	Q38857	Xyloglucan endotransglucosylase/hydrolase protein 22	AT5G57560.1	Xyloglucan endotransglucosylase/hydrolase family protein 	LOC_Os06g48180.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.11239.4.A1_at	B	B1S	POPTR_0001s31220	POPTR_0001s31220 (0:192)	NA	NA	O65922	Caffeoyl-CoA O-methyltransferase 2	AT4G34050.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.112402.1.S1_at	B	B1S	POPTR_0011s12110	POPTR_0011s12110 (4:715)	NA	NA	O94111	"Dynein light chain, cytoplasmic"	AT1G23220.1	Dynein light chain type 1 family protein 	LOC_Os04g38880.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr8g119810.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.112474.1.S1_at	B	B1S	POPTR_0008s09270	POPTR_0008s09270 (7:67)	NA	NA	A7T167	Protein GDAP2 homolog	AT1G69340.1	appr-1-p processing enzyme family protein 	LOC_Os10g30750.1	"appr-1-p processing enzyme family protein, putative, expressed"	Medtr5g046410.1	"Cellular retinaldehyde-binding/triple function, C-terminal; Appr-1-p processing "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112478.1.S1_at	B	B1S	POPTR_0004s16810	POPTR_0004s16810 (7:505)	NA	NA	Q9LQZ7	Probable salt tolerance-like protein At1g75540	AT1G75540.1	salt tolerance homolog2 	LOC_Os04g45690.1	"B-box zinc finger family protein, putative, expressed"	Medtr3g162910.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1125.1.S1_at	B	B2S	POPTR_0016s08800	POPTR_0016s08800 (7:263)//POPTR_0016s08810 (4:181)	scaffold_16:6584261-6586722(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112512.1.A1_at	B	B1S	POPTR_0018s08220	POPTR_0018s08220 (4:464)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112519.1.S1_at	B	B1S	POPTR_0019s13050	POPTR_0019s13050 (3:181)	NA	NA	NA	NA	AT5G10460.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g42950.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr4g128280.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.112591.1.A1_at	B	B1A	POPTR_0015s13740	POPTR_0015s13740 (0:291)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112600.1.A1_at	B	B1S	POPTR_0014s17580	POPTR_0014s17580 (2:203)	NA	NA	Q8L7B2	Serine carboxypeptidase-like 20	AT4G12910.1	serine carboxypeptidase-like 20 	LOC_Os12g15470.2	"OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr8g011750.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.112605.2.S1_at	B	B1S	POPTR_0015s08030	POPTR_0015s08030 (7:321)	NA	NA	Q9S7Q2	"Pentatricopeptide repeat-containing protein At1g74850, chloroplastic"	AT1G74850.1	plastid transcriptionally active 2 	LOC_Os03g60910.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015600.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112637.1.A1_at	B	B1S	POPTR_0004s23260	POPTR_0004s23260 (7:1843)	NA	NA	Q9SYQ8	Receptor protein kinase CLAVATA1	AT5G65700.2	Leucine-rich receptor-like protein kinase family protein 	LOC_Os11g12620.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr2g005580.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.112646.1.A1_at	B	B1S	POPTR_0009s08990	POPTR_0009s08990 (7:194)	NA	NA	Q6YXH8	Cyclin-D4-1	AT1G70210.1	CYCLIN D1;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr5g033980.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112648.1.A1_at	B	B1S	POPTR_0003s22270	POPTR_0003s22270 (6:147)	NA	NA	NA	NA	AT5G12930.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g31350.1	expressed protein	Medtr2g117870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11265.1.A1_at	B	B1S	POPTR_0011s00540	POPTR_0011s00540 (1:851)	NA	NA	Q10237	Uncharacterized protein C4G9.04c	AT4G04885.1	PCF11P-similar protein 4 	LOC_Os08g08830.1	expressed protein	Medtr4g098610.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112661.1.A1_at	B	B1S	POPTR_0006s02420	POPTR_0006s02420 (2:105)	NA	NA	Q5BJZ6	UPF0586 protein C9orf41 homolog	AT2G32170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g43560.1	"AGAP007115-PA, putative, expressed"	AC233673_1.1	hypothetical protein AC233673.1 745-2078 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112672.1.A1_at	B	B1S	POPTR_0001s32640	POPTR_0001s32640 (2:450)	NA	NA	NA	NA	AT3G23900.3	RNA recognition motif (RRM)-containing protein 	LOC_Os01g01150.3	"RNA recognition motif, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.112679.1.A1_at	B	B1S	POPTR_0003s08710	POPTR_0003s08710 (6:501)	NA	NA	Q9LQL2	Nitrate transporter 1.5	AT1G32450.1	nitrate transporter 1.5 	LOC_Os02g48570.1	"peptide transporter PTR2, putative, expressed"	Medtr8g103070.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.112747.1.A1_at	B	B1S	POPTR_0014s03840	POPTR_0014s03840 (8:403)	NA	NA	Q9ZQE5	Pentatricopeptide repeat-containing protein At2g15690	AT2G15690.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g53610.1	"selenium-binding protein, related, putative, expressed"	Medtr6g093250.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112817.1.A1_at	B	B1S	POPTR_0002s23900	POPTR_0002s23900 (0:17)	scaffold_2:21387662-21387948(+) (11)	NA	Q8GZB6	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4"	AT5G13960.1	SU(VAR)3-9 homolog 4 	LOC_Os01g70220.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr7g097120.1	SET-related region; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.112822.1.A1_at	B	B1S	POPTR_0001s17860	POPTR_0001s17860 (6:411)	NA	NA	Q9M8L2	F-box/kelch-repeat protein At1g80440	AT1G80440.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os06g39370.1	"OsFBK16 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g123270.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112834.1.A1_at	B	B1S	POPTR_0002s06660	POPTR_0002s06660 (1:527)	NA	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.3	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.112991.1.S1_at	B	B1S	POPTR_0015s03770	POPTR_0015s03770 (7:1066)	NA	NA	Q9LK95	Transcription factor MYB21	AT1G25340.1	myb domain protein 116 	LOC_Os01g03720.1	"MYB family transcription factor, putative, expressed"	Medtr1g140720.1	Phosphoglycerate/bisphosphoglycerate mutase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113085.1.S1_s_at	B	B1S	POPTR_0001s21140	POPTR_0001s21140 (4:191)	scaffold_1:19488206-19489143(-) (11)	NA	NA	NA	AT3G15840.5	post-illumination chlorophyll fluorescence increase 	LOC_Os03g38950.1	"chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed"	Medtr4g005610.1	"PIFI, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11311.1.A1_at	B	B1S	POPTR_0002s12730	POPTR_0002s12730 (1:1235)	NA	NA	Q42463	"Protein DCL, chloroplastic"	AT1G45230.1	Protein of unknown function (DUF3223) 	LOC_Os02g52744.1	"DCL, chloroplast precursor, putative, expressed"	Medtr3g147730.1	"Protein DCL, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11317.4.A1_at	B	B1S	POPTR_0008s09480	POPTR_0008s09480 (8:1309)	NA	NA	Q93V72	"Glucan endo-1,3-beta-glucosidase-like protein At1g69295"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113180.1.S1_at	B	B1S	POPTR_0009s14170	POPTR_0009s14170 (8:235)	NA	NA	Q9LEL5	3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr3g105610.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.113365.1.S1_at	B	B1S	POPTR_0008s11840	POPTR_0008s11840 (8:1339)	NA	NA	Q84L30	Putative DNA repair protein RAD23-4	AT5G38470.1	Rad23 UV excision repair protein family 	LOC_Os09g24200.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.113369.1.S1_at	B	B1S	POPTR_0011s15230	POPTR_0011s15230 (8:1052)	NA	NA	Q7GCL7	NAC domain-containing protein 74	AT1G33060.2	NAC 014 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr3g122340.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.113391.1.S1_at	B	B2S	POPTR_0019s10140	POPTR_0019s10130 (3:2012)//POPTR_0019s10140 (5:107)	scaffold_19:11715705-11718947(+) (10)	NA	NA	NA	AT4G10070.1	KH domain-containing protein 	NA	NA	Medtr5g008480.1	"KH, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11359.1.A1_at	B	B1S	POPTR_0013s14480	POPTR_0013s14480 (8:270)	NA	NA	Q8GWP0	Transcription factor MYB39	AT4G21440.1	MYB-like 102 	LOC_Os07g37210.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11360.2.A1_at	B	B1S	POPTR_0003s18150	POPTR_0003s18150 (4:437)	NA	NA	Q39131	Lamin-like protein	AT5G15350.1	early nodulin-like protein 17 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g021700.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.113703.2.S1_at	B	B1S	POPTR_0001s28990	POPTR_0001s28990 (8:1573)	NA	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.3	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.113758.1.S1_at	B	B1S	POPTR_0003s12230	POPTR_0003s12230 (4:867)	NA	NA	NA	NA	AT4G11740.1	Ubiquitin-like superfamily protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11379.1.S1_at	B	B1S	POPTR_0014s12970	POPTR_0014s12970 (8:138)	NA	NA	O82261	"Protease Do-like 2, chloroplastic"	AT2G47940.1	DEGP protease 2 	LOC_Os05g05480.1	"OsDegp6 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.113900.1.A1_at	B	B1S	POPTR_0009s13890	POPTR_0009s13890 (0:291)	NA	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.113916.1.A1_at	B	B1S	POPTR_0003s10410	POPTR_0003s10410 (0:211)	NA	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT1G31420.2	Leucine-rich repeat protein kinase family protein 	LOC_Os03g16010.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g026640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.113941.1.A1_at	B	B1S	POPTR_0015s15410	POPTR_0015s15410 (7:619)	scaffold_15:14701416-14702035(-) (9)	NA	Q93VA3	"Cytochrome c6, chloroplastic"	AT5G45040.1	Cytochrome c 	LOC_Os07g38000.1	"cytochrome c, putative, expressed"	Medtr4g114590.1	"Cytochrome c, class I "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.113944.1.A1_at	B	B1S	POPTR_0003s05370	POPTR_0003s05370 (8:2429)	NA	NA	P31583	Ras-related protein RHN1	AT4G19640.1	Ras-related small GTP-binding family protein 	LOC_Os12g43550.2	"ras-related protein, putative, expressed"	Medtr2g123110.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.113960.1.A1_at	B	B1S	POPTR_0005s26750	POPTR_0005s26750 (6:395)	NA	NA	NA	NA	AT5G27280.1	Zim17-type zinc finger protein 	LOC_Os06g50870.1	"DNL zinc finger domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113969.1.A1_at	B	B1S	POPTR_0001s41740	POPTR_0001s41740 (7:516)	NA	NA	NA	NA	AT5G54300.1	Protein of unknown function (DUF761) 	LOC_Os07g37620.1	"fiber expressed protein, putative, expressed"	Medtr2g095300.1	"Protein of unknown function DUF761, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114007.1.A1_at	B	B1S	POPTR_0006s09110	POPTR_0006s09110 (7:319)	NA	NA	NA	NA	AT5G02090.1	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g38264.1	expressed protein	Medtr4g018920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114013.1.A1_at	B	B1S	POPTR_0005s23680	POPTR_0005s23680 (8:279)	NA	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11404.1.S1_at	B	B1S	POPTR_0001s16680	POPTR_0001s16680 (6:290)	NA	NA	Q54W83	Probable U6 snRNA-associated Sm-like protein LSm1	AT3G14080.2	Small nuclear ribonucleoprotein family protein 	LOC_Os04g36810.1	"LSM domain containing protein, expressed"	Medtr8g025390.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114045.1.A1_at	B	B1S	POPTR_0016s07480	POPTR_0016s07480 (5:190)	NA	NA	Q7FAE1	Momilactone A synthase	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g33240.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.114053.1.A1_at	B	B1S	POPTR_0007s00390	POPTR_0007s00390 (3:53)	NA	NA	P48979	Polygalacturonase	AT2G43890.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr2g056320.1	"Regulator of chromosome condensation, RCC1; Parallel beta-helix repeat "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.114067.1.A1_at	B	B1S	POPTR_0006s22910	POPTR_0006s22910 (8:2210)	NA	NA	Q9FVS1	F-box/kelch-repeat protein At1g57790	AT1G57790.1	F-box family protein 	LOC_Os08g34890.1	OsFBDUF46 - F-box and DUF domain containing protein	Medtr7g127580.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114081.1.A1_at	B	B1A	POPTR_0007s13880	POPTR_0007s13880 (3:445)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114116.1.A1_s_at	B	B1S	POPTR_0016s01960	POPTR_0016s01960 (7:607)	scaffold_16:898983-899846(-) (11)	NA	Q9SWG3	Protein FAR-RED IMPAIRED RESPONSE 1	AT4G15090.1	FRS (FAR1 Related Sequences) transcription factor family 	LOC_Os11g45530.1	"transposon protein, putative, unclassified"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.114127.1.A1_at	B	B1S	POPTR_0006s25790	POPTR_0006s25790 (6:531)	NA	NA	NA	NA	AT4G32750.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g17250.1	expressed protein	AC225507_2.1	hypothetical protein AC225507.11 13063-9895 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11414.1.A1_at	B	B1S	POPTR_0014s18450	POPTR_0014s18450 (8:353)	NA	NA	Q4VCM1	Phospholipid--sterol O-acyltransferase	AT1G04010.1	phospholipid sterol acyl transferase 1 	LOC_Os02g56910.1	"lecithine cholesterol acyltransferase, putative"	Medtr7g116490.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
PtpAffx.114167.1.A1_at	B	B1S	POPTR_0007s13610	POPTR_0007s13610 (6:210)	scaffold_7:13655163-13655426(+) (11)	NA	NA	NA	AT3G51060.1	Lateral root primordium (LRP) protein-related 	LOC_Os09g36160.1	"LRP1, putative, expressed"	Medtr5g021040.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114181.1.A1_at	B	B1S	POPTR_0004s24060	POPTR_0004s24060 (3:109)	scaffold_11:3904873-3904984(-) (10)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.114202.1.A1_at	B	B1S	POPTR_0001s39380	POPTR_0001s39380 (5:144)	scaffold_1:38545883-38546121(+) (11)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.114217.1.A1_at	B	B1S	POPTR_0006s04190	POPTR_0006s04190 (6:301)	scaffold_6:2845467-2845810(-) (9)	NA	P93002	Regulatory protein NPR1	AT2G41370.1	Ankyrin repeat family protein / BTB/POZ domain-containing protein 	LOC_Os01g72020.1	"BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr7g107020.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.114285.1.A1_at	B	B1S	POPTR_0004s05660	POPTR_0004s05660 (6:447)	scaffold_4:4422675-4423348(-) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT2G38300.1	myb-like HTH transcriptional regulator family protein 	LOC_Os06g35140.1	"MYB family transcription factor, putative, expressed"	Medtr4g134780.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114358.1.A1_at	B	B1S	POPTR_0001s10760	POPTR_0001s10760 (7:577)	NA	NA	P12628	NADP-dependent malic enzyme	AT2G19900.1	NADP-malic enzyme 1 	LOC_Os05g09440.1	"NADP-dependent malic enzyme, chloroplast precursor, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114374.1.A1_at	B	B1S	POPTR_0007s02060	POPTR_0007s02060 (7:545)	NA	NA	Q2KID2	Endonuclease III-like protein 1	AT2G31450.2	DNA glycosylase superfamily protein 	LOC_Os11g16580.1	"endonuclease III-like protein 1, putative, expressed"	Medtr2g118190.1	HhH-GPD 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0003677|DNA binding||GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	GO:0005622|intracellular
PtpAffx.114437.1.A1_at	B	B1A	POPTR_0018s14370	POPTR_0018s14370 (8:296)	NA	NA	Q8GUH1	U-box domain-containing protein 33	AT2G24370.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os02g54590.1	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114451.1.A1_at	B	B1S	POPTR_0005s10870	POPTR_0005s10870 (0:33)	scaffold_5:7835481-7835674(-) (11)	NA	NA	NA	AT5G10490.3	MSCS-like 2 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114460.1.A1_at	B	B1S	POPTR_0012s06820	POPTR_0012s06820 (1:5306)	NA	NA	NA	NA	AT5G07980.1	dentin sialophosphoprotein-related 	LOC_Os03g11460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114474.1.A1_at	B	B1A	POPTR_0002s24390	POPTR_0002s24390 (8:446)	scaffold_2:21775091-21775631(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11450.1.A1_at	B	B1S	POPTR_0010s11160	POPTR_0010s11160 (0:3)	NA	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G01940.1	C2H2-like zinc finger protein 	LOC_Os09g27650.2	"ZOS9-14 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.114516.1.A1_at	B	B2S	POPTR_0002s10720	POPTR_0002s10720 (7:340)//POPTR_0002s10710 (6:290)	scaffold_2:7792422-7792904(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114530.1.A1_at	B	B1S	POPTR_0012s10410	POPTR_0012s10410 (1:30)	scaffold_12:11188300-11188456(+) (11)	NA	Q7M443	Chitinase 2	NA	NA	LOC_Os10g28050.1	"chitinase 2, putative, expressed"	Medtr6g089840.1	"Glycoside hydrolase, chitinase active site; Ribosomal protein S2 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.114551.1.A1_at	B	B1S	POPTR_0002s08960	POPTR_0002s08960 (4:4731)	scaffold_2:6337359-6342742(+) (11)	NA	NA	NA	AT1G36990.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). 	LOC_Os04g37540.1	expressed protein	Medtr3g098440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114566.1.A1_at	B	B1S	POPTR_0007s02180	POPTR_0007s02180 (0:14)	scaffold_7:1313262-1313444(-) (10)	NA	P54967	Biotin synthase	AT2G43360.1	Radical SAM superfamily protein 	LOC_Os08g42730.1	"radical SAM enzyme, putative, expressed"	Medtr4g104400.1	Biotin and thiamin synthesis associated 	GO:0044283|small molecule biosynthetic process||GO:0009102|biotin biosynthetic process||GO:0044281|small molecule metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0004076|biotin synthase activity	NA
PtpAffx.114581.1.A1_at	B	B1S	POPTR_0015s09630	POPTR_0015s09630 (3:149)	scaffold_15:10798193-10798507(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114617.1.A1_at	B	B2S	POPTR_0002s22300	POPTR_0002s22300 (8:352)//POPTR_0014s17160 (0:317)	NA	NA	Q0WQ57	Auxilin-related protein 2	AT4G12770.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g25320.1	"auxilin, putative, expressed"	Medtr3g142790.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11467.1.A1_at	B	B1S	POPTR_0004s16430	POPTR_0004s16430 (3:460)	NA	NA	Q84V03	F-box protein At2g16365	AT2G16365.2	F-box family protein 	NA	NA	Medtr4g095970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114706.1.A1_at	B	B1S	POPTR_0016s02850	POPTR_0016s02850 (0:452)	NA	NA	Q84LH3	Werner Syndrome-like exonuclease	AT4G13870.1	Werner syndrome-like exonuclease 	LOC_Os01g53580.1	"3-5 exonuclease domain-containing protein, putative"	Medtr2g085350.1	"Polynucleotidyl transferase, Ribonuclease H fold "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.114721.1.A1_at	B	B1S	POPTR_0004s02980	POPTR_0004s02980 (8:372)	scaffold_4:1987993-1988426(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114727.1.A1_at	B	B1S	POPTR_0002s07320	POPTR_0002s07320 (7:495)	NA	NA	Q3E7Q9	Probable glycosyltransferase At5g25310	AT1G21480.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr4g107550.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.11475.4.A1_at	B	B1S	POPTR_0001s10700	POPTR_0001s10700 (7:88)	NA	NA	O65781	UDP-glucose 4-epimerase GEPI48	AT4G10960.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 5 	LOC_Os05g51670.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.114811.1.A1_at	B	B1S	POPTR_0009s10090	POPTR_0009s10090 (4:547)	NA	NA	P43297	Cysteine proteinase RD21a	AT1G47128.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.11483.2.A1_at	B	B1S	POPTR_0007s07100	POPTR_0007s07100 (8:330)	NA	NA	Q9SJ20	Ribonucleoside-diphosphate reductase large subunit	AT2G21790.1	ribonucleotide reductase 1 	LOC_Os06g07210.1	"ribonucleoside-diphosphate reductase large subunit, putative, expressed"	Medtr4g141590.1	"Ribonucleotide reductase R1 subunit, N-terminal; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0055114|oxidation reduction	GO:0005524|ATP binding||GO:0004748|ribonucleoside-diphosphate reductase activity	GO:0005971|ribonucleoside-diphosphate reductase complex
PtpAffx.114830.1.A1_at	B	B1A	POPTR_0004s06070	POPTR_0004s06070 (7:354)	scaffold_4:4825991-4826549(-) (11)	NA	NA	NA	AT4G18830.1	ovate family protein 5 	LOC_Os01g54570.1	DUF623 domain containing protein	Medtr4g135890.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114839.1.A1_at	B	B2S	POPTR_0190s00220	POPTR_0190s00220 (1:333)//POPTR_0123s00240 (0:299)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.11484.1.A1_at	B	B1S	POPTR_0002s16770	POPTR_0002s16770 (7:106)	NA	NA	NA	NA	AT4G01210.1	glycosyl transferase family 1 protein 	LOC_Os01g43380.1	"glycosyltransferase family protein 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114840.1.A1_at	B	B1S	POPTR_0002s18000	POPTR_0002s18000 (6:71)	NA	NA	Q9SYK1	Pentatricopeptide repeat-containing protein At1g05600	AT1G05600.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g14530.3	"PPR repeat containing protein, expressed"	Medtr5g049980.1	Intermediate filament protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114841.1.A1_at	B	B1A	POPTR_0006s06360	POPTR_0006s06360 (1:79)	NA	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT5G20260.1	Exostosin family protein 	LOC_Os02g39960.1	"exostosin family protein, putative"	Medtr8g121620.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.114897.1.A1_at	B	B1S	POPTR_0005s04720	POPTR_0005s04720 (7:266)	scaffold_5:3164213-3164677(-) (11)	NA	NA	NA	AT3G26932.2	dsRNA-binding protein 3 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.114943.1.A1_at	B	B1S	POPTR_0015s09390	POPTR_0015s09390 (6:269)	scaffold_15:10614515-10614976(-) (11)	NA	Q9C7V5	Putative pentatricopeptide repeat-containing protein At1g64310	AT1G64310.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g36540.1	"pentatricopeptide, putative"	Medtr3g114590.1	Ribosomal protein L11; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114972.1.A1_at	B	B1S	POPTR_0016s13210	POPTR_0016s13210 (0:321)	NA	NA	Q8VYK6	40S ribosomal protein S4-3	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	GO:0003723|RNA binding	NA
PtpAffx.114976.1.A1_at	B	B1S	POPTR_0004s10180	POPTR_0004s10180 (6:341)	scaffold_4:8756968-8757475(+) (11)	NA	Q55403	Thylakoid membrane protein slr0575	AT5G38660.1	acclimation of photosynthesis to  environment 	LOC_Os08g27010.1	"APE1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115010.1.A1_at	B	B1S	POPTR_0007s12060	POPTR_0007s12060 (8:132)	NA	NA	NA	NA	AT3G50830.1	cold-regulated 413-plasma membrane 2 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115121.1.A1_at	B	B1S	POPTR_0001s13030	POPTR_0001s13030 (0:106)	NA	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr7g020760.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.115190.1.A1_s_at	B	B1S	POPTR_0002s02600	POPTR_0002s02600 (6:150)	scaffold_2:1500884-1501182(-) (11)	NA	Q0WSY2	Filament-like plant protein 4	AT1G19835.2	Plant protein of unknown function (DUF869) 	LOC_Os03g14250.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr5g021760.1	"Protein of unknown function DUF869, plant "	GO:0016032|viral reproduction	NA	NA
PtpAffx.115204.1.A1_at	B	B2S	POPTR_0017s05480	POPTR_0007s01680 (2:485)//POPTR_0017s05480 (8:413)	scaffold_17:4344121-4344647(+) (9)	NA	NA	NA	AT1G08760.1	Plant protein of unknown function (DUF936) 	LOC_Os08g42870.1	expressed protein	Medtr4g092550.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115220.1.S1_at	B	B1S	POPTR_0002s25890	POPTR_0002s25890 (2:1046)	NA	NA	Q4KLU2	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11524.3.S1_at	B	B1S	POPTR_0012s03310	POPTR_0012s03310 (8:1302)	NA	NA	Q8LAD2	"Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial"	AT5G23250.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.115266.1.A1_at	B	B1S	POPTR_0015s13450	POPTR_0015s13450 (0:217)	NA	NA	Q32LJ2	ADP-ribosylation factor-related protein 1	AT5G52210.2	GTP-binding protein 1 	LOC_Os03g27450.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g035450.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.115315.1.S1_at	B	B1A	POPTR_0003s17480	POPTR_0003s17480 (3:161)	scaffold_3:16825145-16825633(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115333.2.A1_at	B	B1S	POPTR_0005s04820	POPTR_0005s04820 (8:1361)	NA	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115368.1.A1_at	B	B1S	POPTR_0007s02850	POPTR_0007s02850 (3:575)	scaffold_7:1654991-1655763(-) (11)	NA	O23372	Probable histone-lysine N-methyltransferase ATXR3	AT4G15180.1	SET domain protein 2 	LOC_Os08g08210.1	"SET domain containing protein, expressed"	Medtr2g103390.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115372.1.S1_at	B	B1S	POPTR_0008s19680	POPTR_0008s19680 (8:2573)	NA	NA	P52901	"Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial"	AT1G59900.1	pyruvate dehydrogenase complex E1 alpha subunit 	LOC_Os02g50620.1	"dehydrogenase E1 component domain containing protein, expressed"	Medtr8g074090.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.115389.1.S1_at	B	B1S	POPTR_0008s08940	POPTR_0008s08940 (0:1434)	NA	NA	Q6P4K8	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	AT1G26550.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g24540.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g090170.1	PpiC-type peptidyl-prolyl cis-trans isomerase 	NA	GO:0016853|isomerase activity	NA
PtpAffx.115467.1.S1_at	B	B1S	POPTR_0007s13500	POPTR_0007s13500 (7:1975)	NA	NA	O23240	"D-2-hydroxyglutarate dehydrogenase, mitochondrial"	AT4G36400.2	FAD-linked oxidases family protein 	LOC_Os07g08950.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.11548.1.A1_at	B	B1S	POPTR_0017s01000	POPTR_0017s01000 (0:16)	scaffold_17:744396-744606(+) (11)	NA	Q0WMN5	Uncharacterized protein At3g49135	AT5G24060.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os11g34130.1	expressed protein	Medtr6g062650.1	"binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115541.1.S1_at	B	B2S	POPTR_0004s20620	POPTR_0009s15910 (5:1349)//POPTR_0004s20620 (7:885)	NA	NA	Q5ZJK8	T-complex protein 1 subunit eta	AT3G11830.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g47320.1	"T-complex protein, putative, expressed"	Medtr5g094680.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.115543.1.S1_at	B	B1S	POPTR_0010s26180	POPTR_0010s26180 (4:473)	NA	NA	NA	NA	AT5G08400.2	Protein of unknown function (DUF3531) 	LOC_Os02g58120.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr8g050210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115584.1.S1_at	B	B1S	POPTR_0005s26430	POPTR_0005s26430 (3:652)	NA	NA	Q94CH6	GDSL esterase/lipase EXL3	AT1G75900.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os10g30290.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g031720.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.11561.1.A1_at	B	B3A	POPTR_0005s04540	POPTR_0005s04560 (7:286)//POPTR_0005s04550 (4:277)//POPTR_0005s04540 (8:231)	scaffold_5:3038061-3038328(+) (10)	NA	Q9FDW0	Protein FRIGIDA	AT5G27230.1	Frigida-like protein 	LOC_Os07g40270.1	"frigida, putative, expressed"	Medtr3g128210.1	Prefoldin; Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115638.1.S1_at	B	B1S	POPTR_0010s19270	POPTR_0010s19270 (6:169)	NA	NA	C0LGQ4	Probable LRR receptor-like serine/threonine-protein kinase MRH1	AT4G18640.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g48390.2	expressed protein	Medtr1g102890.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.115715.1.S1_at	B	B1S	POPTR_0001s28350	POPTR_0001s28350 (1:117)	NA	NA	NA	NA	AT4G03250.1	Homeodomain-like superfamily protein 	LOC_Os01g48170.1	homeobox domain containing protein	Medtr5g096920.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.11593.2.S1_at	B	B1S	POPTR_0001s08110	POPTR_0001s08110 (3:133)	scaffold_1:6176567-6177084(-) (10)	NA	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os08g02490.1	"AT hook motif domain containing protein, expressed"	Medtr8g106590.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116050.1.S1_at	B	B1S	POPTR_0001s38280	POPTR_0001s38280 (5:2252)	NA	NA	NA	NA	AT3G15070.2	RING/U-box superfamily protein 	LOC_Os01g47740.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g092000.1	"zinc finger protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116099.1.S1_at	B	B1S	POPTR_0011s09880	POPTR_0011s09880 (8:1817)	NA	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11610.1.S1_at	B	B1S	POPTR_0018s07100	POPTR_0018s07100 (7:251)	NA	NA	NA	NA	AT2G06010.1	OBP3-responsive gene 4 	LOC_Os04g36850.1	"ORG4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116143.1.S1_at	B	B1S	POPTR_0001s31360	POPTR_0001s31360 (6:246)	NA	NA	P0CB26	Uncharacterized protein At1g10890	AT5G13340.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os10g15390.1	"ribosomal protein S7, putative, expressed"	Medtr2g007210.1	"Arginine and glutamate-rich protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116314.1.S1_at	B	B1S	POPTR_0002s23960	POPTR_0002s23960 (7:762)	NA	NA	Q5B4C9	Sterol 3-beta-glucosyltransferase	AT3G07020.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g04254.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr4g023830.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.116337.1.S1_at	B	B2S	POPTR_0014s17320	POPTR_0002s24110 (0:1148)//POPTR_0014s17320 (8:1049)	NA	NA	Q9Y305	"Acyl-coenzyme A thioesterase 9, mitochondrial"	AT5G48370.2	Thioesterase/thiol ester dehydrase-isomerase superfamily protein 	LOC_Os09g34190.1	"acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed"	Medtr7g092460.1	"Acyl-coenzyme A thioesterase 9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116385.1.S1_at	B	B1S	POPTR_0014s04540	POPTR_0014s04540 (0:101)	NA	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	Medtr5g006070.1	BTB/POZ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116418.1.S1_at	B	B1S	POPTR_0004s17470	POPTR_0004s17470 (8:501)	NA	NA	Q86JE5	ER lumen protein retaining receptor	AT4G38790.1	ER lumen protein retaining receptor family protein 	LOC_Os08g43470.1	"ER lumen protein retaining receptor, putative, expressed"	Medtr3g156420.1	ER lumen protein retaining receptor; Orn/DAP/Arg decarboxylase 2 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
PtpAffx.116442.2.S1_at	B	B2S	POPTR_0005s09270	POPTR_0005s09270 (7:428)//POPTR_0007s07510 (0:425)	NA	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT3G19950.1	RING/U-box superfamily protein 	LOC_Os06g01200.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g143590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11651.2.S1_at	B	B1S	POPTR_0010s02540	POPTR_0010s02540 (6:457)	NA	NA	NA	NA	AT4G15790.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). 	LOC_Os12g35620.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116521.1.S1_at	B	B1S	POPTR_0001s20780	POPTR_0001s20780 (8:476)	NA	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os07g32412.2	"transposon protein, putative, unclassified, expressed"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116539.1.A1_at	B	B1S	POPTR_0005s15720	POPTR_0005s15720 (6:418)	NA	NA	Q9FF17	"Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase"	AT5G38460.2	"ALG6, ALG8 glycosyltransferase family "	LOC_Os07g07010.1	"glucosyltransferase, putative, expressed"	Medtr5g085330.1	"ALG6, ALG8 glycosyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.116558.1.A1_at	B	B1S	POPTR_0001s45450	POPTR_0001s45450 (8:471)	NA	NA	O65351	Subtilisin-like protease	AT4G10550.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr4g132770.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.116559.1.A1_at	B	B1S	POPTR_0007s06460	POPTR_0007s06460 (5:1629)	NA	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT1G71830.1	somatic embryogenesis receptor-like kinase 1 	LOC_Os08g07760.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g008520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.116567.1.A1_at	B	B1S	POPTR_0015s13000	POPTR_0015s13000 (4:1576)	NA	NA	P29144	Tripeptidyl-peptidase 2	AT4G20850.1	tripeptidyl peptidase ii 	LOC_Os02g44520.1	"OsSub19 - Putative Subtilisin homologue, expressed"	Medtr1g127030.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.11660.1.A1_at	B	B1S	POPTR_0009s07390	POPTR_0009s07390 (3:389)	NA	NA	Q54FG5	Rho GTPase-activating protein gacJJ	AT5G19390.2	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g096580.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.116600.1.A1_at	B	B1S	POPTR_0017s01990	POPTR_0017s01990 (7:492)	NA	NA	NA	NA	AT3G03210.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os10g39400.1	expressed protein	Medtr5g084830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116633.1.A1_at	B	B1S	POPTR_0009s09220	POPTR_0009s09220 (8:292)	NA	NA	Q9N4Y9	Zinc finger protein-like 1 homolog	AT2G14835.2	RING/U-box superfamily protein 	LOC_Os10g20600.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g135130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116674.1.A1_at	B	B1S	POPTR_0001s22110	POPTR_0001s22110 (6:323)	NA	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G22850.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116686.1.A1_at	B	B1S	POPTR_0016s14830	POPTR_0016s14830 (5:471)	NA	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT5G01980.1	RING/U-box superfamily protein 	LOC_Os12g02620.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g080710.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116687.1.A1_at	B	B1S	POPTR_0019s08750	POPTR_0019s08750 (8:498)	NA	NA	Q8YZS3	UPF0176 protein all0384	AT2G40760.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os05g25780.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr5g076610.1	Rhodanese-like; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1167.1.S1_at	B	B1S	POPTR_0005s22030	POPTR_0005s22030 (8:1188)	scaffold_5:21037293-21041363(-) (10)	NA	P45078	Hypoxanthine phosphoribosyltransferase	AT1G71750.2	Hypoxanthine-guanine phosphoribosyltransferase 	LOC_Os05g08950.1	"phosphoribosyl transferase, putative, expressed"	NA	NA	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.116715.1.A1_at	B	B1S	POPTR_0008s12570	POPTR_0008s12570 (0:196)	NA	NA	NA	NA	AT2G01100.3	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr1g137830.1	"W09G12.7, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116735.1.A1_at	B	B1S	POPTR_0006s18360	POPTR_0006s18360 (1:321)	NA	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.116740.1.A1_at	B	B1S	POPTR_0005s11640	POPTR_0005s11640 (0:830)	NA	NA	Q9Y4A5	Transformation/transcription domain-associated protein	AT2G17930.1	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain 	LOC_Os07g45070.1	"FAT domain-containing protein, putative, expressed"	Medtr5g021910.1	"PIK-related kinase, FATC "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.116749.1.A1_at	B	B1S	POPTR_0006s04160	POPTR_0006s04160 (8:152)	NA	NA	Q43415	"Lycopene beta cyclase, chloroplastic/chromoplastic"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr7g107170.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.116752.1.A1_at	B	B1S	POPTR_0008s18920	POPTR_0008s18920 (7:166)	NA	NA	Q9URZ0	Probable alpha-galactosidase	AT3G26380.1	Melibiase family protein 	LOC_Os01g33420.1	"glycosyl hydrolase family protein 27, putative, expressed"	Medtr3g102420.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116872.1.S1_at	B	B1S	POPTR_0005s10740	POPTR_0005s10740 (8:508)	NA	NA	Q3EBZ2	F-box protein SKIP23	AT2G17030.1	F-box family protein with a domain of unknown function (DUF295) 	NA	NA	Medtr8g088880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1169.11.S1_at	B	B1S	POPTR_0008s03040	POPTR_0008s03040 (3:529)	NA	NA	P93354	Histone H2B	AT2G28720.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.1169.13.S1_at	B	B1S	POPTR_0007s13830	POPTR_0007s13830 (2:407)	NA	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT4G38960.1	B-box type zinc finger family protein 	LOC_Os09g35880.1	"B-box zinc finger family protein, putative, expressed"	Medtr5g021510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1169.9.S1_at	B	B1S	POPTR_0007s13830	POPTR_0007s13830 (2:230)	NA	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT4G38960.1	B-box type zinc finger family protein 	LOC_Os09g35880.1	"B-box zinc finger family protein, putative, expressed"	Medtr5g021510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.116960.1.S1_at	B	B1S	POPTR_0005s20670	POPTR_0005s20670 (6:330)	NA	NA	Q0WT31	Probable methyltransferase PMT25	AT2G34300.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.117004.4.S1_at	B	B1S	POPTR_0004s24210	POPTR_0004s24210 (5:721)	NA	NA	Q8R116	Protein notum homolog	AT5G45280.2	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11705.1.A1_at	B	B1S	POPTR_0003s20870	POPTR_0003s20870 (7:94)	NA	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.11710.3.S1_at	B	B1S	POPTR_0003s08300	POPTR_0003s08300 (6:324)	NA	NA	P40228	Casein kinase II subunit beta	AT5G47080.4	casein kinase II  beta chain 1 	LOC_Os10g41520.2	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
PtpAffx.117404.1.S1_at	B	B1S	POPTR_0010s04820	POPTR_0010s04820 (6:162)	NA	NA	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.1175.1.A1_at	B	B1S	POPTR_0006s12320	POPTR_0006s12320 (3:753)	scaffold_6:9488083-9489057(+) (11)	NA	P36862	GTP-binding protein yptV3	AT5G03530.1	RAB GTPase homolog C2A 	LOC_Os03g05280.1	"ras-related protein, putative, expressed"	Medtr3g143270.1	"Ras GTPase; Sigma-54 factor, interaction region; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.117529.1.S1_at	B	B1S	POPTR_0017s12120	POPTR_0017s12120 (0:5)	NA	NA	Q9LHD1	ABC transporter B family member 15	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.11756.1.A1_at	B	B1S	POPTR_0002s17040	POPTR_0002s17040 (8:504)	NA	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT4G01050.1	thylakoid rhodanese-like 	LOC_Os02g15750.1	expressed protein	AC233680_8.1	"coded for by A. thaliana cDNA T22670; coded for by A. thaliana cDNA T44720; coded for by A. thaliana cDNA T41991; coded for by A. thaliana cDNA AA042110, putative AC233680.1 46729-45900 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117578.1.S1_at	B	B1S	POPTR_0018s14040	POPTR_0018s14040 (7:663)	NA	NA	Q9SW00	Oxysterol-binding protein-related protein 4B	AT4G25850.1	OSBP(oxysterol binding protein)-related protein 4B 	LOC_Os08g40590.2	"oxysterol-binding protein, putative, expressed"	Medtr2g042530.1	Oxysterol-binding protein 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.117850.1.S1_at	B	B1A	POPTR_0001s43200	POPTR_0001s43200 (2:199)	NA	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117868.1.A1_at	B	B1S	POPTR_0018s03470	POPTR_0018s03470 (5:87)	NA	NA	NA	NA	AT1G13480.1	Protein of unknown function (DUF1262) 	LOC_Os08g31880.1	conserved hypothetical protein	Medtr5g036800.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117904.1.S1_at	B	B1S	POPTR_0003s12500	POPTR_0003s12500 (7:574)	NA	NA	Q5E9Q1	KTEL motif-containing protein 1	AT5G23850.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os02g42920.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118084.1.S1_at	B	B1S	POPTR_0014s18940	POPTR_0014s18940 (0:12)	NA	NA	P49211	60S ribosomal protein L32-1	AT4G18100.1	Ribosomal protein L32e 	LOC_Os09g32532.2	"60S ribosomal protein L32, putative, expressed"	Medtr4g134080.1	Ribosomal protein L32e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.118136.1.S1_at	B	B1S	POPTR_0004s06710	POPTR_0004s06710 (7:823)	NA	NA	Q9LFR1	Probable peptide/nitrate transporter At5g14940	AT5G14940.1	Major facilitator superfamily protein 	LOC_Os06g13210.1	"peptide transporter PTR2, putative, expressed"	Medtr6g009300.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.118151.1.S1_at	B	B2S	POPTR_0001s13990	POPTR_0001s13990 (5:278)//POPTR_0456s00200 (0:234)	NA	NA	O65012	Cytochrome P450 78A4	AT1G74110.1	"cytochrome P450, family 78, subfamily A, polypeptide 10 "	LOC_Os11g29720.1	"cytochrome P450, putative, expressed"	Medtr5g047920.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.118180.1.S1_at	B	B1S	POPTR_0016s14830	POPTR_0016s14830 (5:508)	NA	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT5G01980.1	RING/U-box superfamily protein 	LOC_Os12g02620.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g080710.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118185.1.S1_at	B	B1S	POPTR_0002s15550	POPTR_0002s15550 (0:96)	NA	NA	Q52QH4	NAC domain-containing protein 68	AT1G33060.1	NAC 014 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.118187.1.A1_a_at	B	B1S	POPTR_0006s11680	POPTR_0006s11680 (8:371)	scaffold_6:8897036-8897412(-) (9)	NA	Q8GYY1	Heat stress transcription factor A-3	AT5G03720.1	heat shock transcription factor A3 	LOC_Os02g32590.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11820.3.S1_at	B	B3S	POPTR_0015s13960	POPTR_0011s13140 (2:309)//POPTR_0001s40220 (2:288)//POPTR_0015s13960 (5:287)	NA	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os11g39940.1	"transposon protein, putative, unclassified"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.11824.1.A1_at	B	B1S	POPTR_0004s08040	POPTR_0004s08040 (8:454)	scaffold_4:6573445-6573947(-) (9)	NA	NA	NA	AT1G66080.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF775 (InterPro:IPR008493); Has 285 Blast hits to 283 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 88; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os03g13450.2	expressed protein	Medtr5g085080.1	Protein of unknown function DUF775 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118256.1.S1_a_at	B	B1S	POPTR_1239s00210	POPTR_1239s00210 (4:196)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11832.1.A1_at	B	B1S	POPTR_0018s14290	POPTR_0018s14290 (0:306)	NA	NA	Q8LD27	Proteasome subunit beta type-6	AT4G31300.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os02g53060.1	"peptidase, T1 family, putative, expressed"	Medtr3g132980.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.118614.2.S1_at	B	B1S	POPTR_0005s18140	POPTR_0005s18140 (2:580)	scaffold_5:16223217-16224136(+) (11)	NA	Q8N2M8	"Splicing factor, arginine/serine-rich 16"	AT4G36980.4	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). "	LOC_Os03g27840.1	"splicing factor, arginine/serine-rich 16, putative, expressed"	Medtr5g017370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118623.2.S1_at	B	B1S	POPTR_0008s13060	POPTR_0008s13060 (7:321)	NA	NA	Q88BD4	Phosphomannomutase/phosphoglucomutase	AT1G70820.1	"phosphoglucomutase, putative / glucose phosphomutase, putative "	LOC_Os06g28194.1	expressed protein	Medtr4g114290.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.118706.1.S1_at	B	B1S	POPTR_0007s08560	POPTR_0007s08560 (5:325)	NA	NA	O22757	MLO-like protein 8	AT2G17480.1	Seven transmembrane MLO family protein 	LOC_Os10g39520.1	"MLO domain containing protein, putative, expressed"	Medtr8g087610.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.118780.1.S1_at	B	B1S	POPTR_0008s15290	POPTR_0008s15290 (7:1097)	NA	NA	Q9FDW0	Protein FRIGIDA	AT3G22440.1	FRIGIDA-like protein 	LOC_Os07g07680.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118799.1.S1_at	B	B1S	POPTR_0016s03170	POPTR_0016s03170 (2:356)	NA	NA	O22207	Ubiquitin carboxyl-terminal hydrolase 5	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.118864.1.S1_at	B	B1S	POPTR_0003s16280	POPTR_0003s16280 (8:872)	NA	NA	Q8LL04	RNA polymerase II C-terminal domain phosphatase-like 3	AT2G33540.1	C-terminal domain phosphatase-like 3 	LOC_Os11g31890.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr7g020970.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.118894.1.S1_at	B	B1S	POPTR_0017s12270	POPTR_0017s12270 (7:201)	NA	NA	O35587	Transmembrane protein Tmp21	AT1G26690.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.118936.1.S1_at	B	B1S	POPTR_0003s19840	POPTR_0003s19840 (6:203)	NA	NA	NA	NA	AT3G14180.1	sequence-specific DNA binding transcription factors 	LOC_Os04g36790.1	"transcription factor like protein, putative, expressed"	Medtr8g025830.1	"6b-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118964.1.S1_at	B	B1S	POPTR_0009s07350	POPTR_0009s07350 (8:2354)	NA	NA	Q9GSB0	Crt homolog 1	AT5G19380.1	CRT (chloroquine-resistance transporter)-like transporter 1 	LOC_Os01g72570.2	expressed protein	Medtr5g096460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118982.1.S1_at	B	B1S	POPTR_0001s16780	POPTR_0001s16780 (7:747)	NA	NA	Q9LNR3	"Lipoxygenase 3, chloroplastic"	AT1G17420.1	lipoxygenase 3 	LOC_Os03g08220.1	"lipoxygenase protein, putative, expressed"	Medtr8g025120.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.119000.1.S1_at	B	B1S	POPTR_0019s15050	POPTR_0019s15050 (6:387)	NA	NA	Q9FLC6	RING-H2 finger protein ATL73	AT5G05280.1	RING/U-box superfamily protein 	LOC_Os04g34230.1	"RING-H2 finger protein, putative, expressed"	Medtr7g080330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11907.2.S1_at	B	B1S	POPTR_0002s18810	POPTR_0002s18810 (6:654)	scaffold_2:14702625-14703350(-) (9)	NA	O60155	Putative prolyl-tRNA synthetase C19C7.06	AT3G62120.2	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os12g25710.3	"bifunctional aminoacyl-tRNA synthetase, putative, expressed"	Medtr7g134100.1	"Prolyl-tRNA synthetase, bacterial "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.11907.3.A1_at	B	B1S	POPTR_0014s10800	POPTR_0014s10800 (6:465)	NA	NA	O60155	Putative prolyl-tRNA synthetase C19C7.06	AT3G62120.2	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os12g25710.3	"bifunctional aminoacyl-tRNA synthetase, putative, expressed"	Medtr7g134100.1	"Prolyl-tRNA synthetase, bacterial "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.119075.1.S1_at	B	B1S	POPTR_0014s12700	POPTR_0014s12700 (8:484)	NA	NA	Q9M7K4	Potassium transporter 5	AT4G13420.1	high affinity K+ transporter 5 	LOC_Os01g70490.1	"potassium transporter, putative, expressed"	Medtr7g130210.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.119120.1.A1_at	B	B1S	POPTR_0001s31470	POPTR_0001s31470 (0:279)	NA	NA	P42734	Probable cinnamyl alcohol dehydrogenase 9	AT4G39330.1	cinnamyl alcohol dehydrogenase 9 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr4g141720.1	"Alcohol dehydrogenase, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.119129.1.A1_at	B	B1S	POPTR_0018s09200	POPTR_0018s09200 (8:333)	scaffold_18:10081106-10081511(-) (11)	NA	Q5XF85	E3 ubiquitin-protein ligase ATL42	AT4G28890.1	RING/U-box superfamily protein 	LOC_Os05g51780.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr6g098760.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119136.1.A1_at	B	B1S	POPTR_0004s04920	POPTR_0004s04920 (7:345)	NA	NA	O49255	NAC domain-containing protein 29	AT1G61110.1	NAC domain containing protein 25 	LOC_Os11g03300.1	"NAC domain transcription factor, putative, expressed"	Medtr2g110730.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.11916.2.S1_at	B	B1S	POPTR_0007s03260	POPTR_0007s03260 (3:781)	NA	NA	Q9FUY6	MADS-box protein JOINTLESS	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os02g52340.1	"OsMADS22 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.119161.1.A1_at	B	B1S	POPTR_0001s17710	POPTR_0001s17710 (0:1996)	NA	NA	Q9SEX2	Katanin p60 ATPase-containing subunit	AT1G80350.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g49000.1	"katanin p60 ATPase-containing subunit, putative, expressed"	Medtr4g165730.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.119179.1.A1_at	B	B1S	POPTR_0002s06120	POPTR_0002s06120 (3:71)	NA	NA	Q38911	Probable xyloglucan endotransglucosylase/hydrolase protein 15	AT4G14130.1	xyloglucan endotransglucosylase/hydrolase 15 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.119220.1.A1_at	B	B1S	POPTR_0002s07760	POPTR_0002s07760 (3:480)	NA	NA	Q94KE1	Probable methyltransferase PMT10	AT1G77260.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g62800.1	"methyltransferase, putative, expressed"	Medtr3g092020.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.119235.1.A1_at	B	B1S	POPTR_0178s00240	POPTR_0178s00240 (0:223)	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.119260.1.A1_at	B	B1S	POPTR_0018s08050	POPTR_0018s08050 (8:483)	NA	NA	Q9VR91	Probable E3 ubiquitin-protein ligase HERC2	AT5G11580.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os01g52630.1	"regulator of chromosome condensation, putative, expressed"	Medtr3g130590.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119306.1.S1_at	B	B1S	POPTR_0006s03740	POPTR_0006s03740 (2:180)	NA	NA	NA	NA	AT1G68060.1	microtubule-associated proteins 70-1 	LOC_Os02g50320.2	"ATMAP70 protein, putative, expressed"	Medtr4g157060.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11933.1.S1_at	B	B1S	POPTR_0013s02990	POPTR_0013s02990 (7:411)	scaffold_13:1815072-1815581(+) (11)	NA	O65759	Histone H2AX	AT1G54690.1	gamma histone variant H2AX 	LOC_Os12g34510.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr7g130040.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.11934.1.S1_at	B	B1S	POPTR_0004s06320	POPTR_0004s06320 (6:706)	NA	NA	Q55GU0	Probable serine/threonine-protein kinase DDB_G0267514	AT4G18950.1	Integrin-linked protein kinase family 	LOC_Os01g54480.1	"serine/threonine protein kinase, putative, expressed"	Medtr5g099160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11934.2.A1_at	B	B1S	POPTR_0004s06320	POPTR_0004s06320 (0:309)	NA	NA	Q55GU0	Probable serine/threonine-protein kinase DDB_G0267514	AT4G18950.1	Integrin-linked protein kinase family 	LOC_Os01g54480.1	"serine/threonine protein kinase, putative, expressed"	Medtr5g099160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.119343.4.A1_at	B	B1S	POPTR_0005s26390	POPTR_0005s26390 (1:254)	NA	NA	Q96MB7	Putative nuclease HARBI1	AT4G29780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os01g40070.1	expressed protein	Medtr1g019300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119372.1.A1_at	B	B1S	POPTR_0008s17400	POPTR_0008s17400 (8:1075)	NA	NA	P42784	Carboxyl-terminal-processing protease	AT4G17740.1	Peptidase S41 family protein 	LOC_Os02g57060.1	"OsCttP2 - Putative C-terminal processing peptidase homologue, expressed"	Medtr1g087140.1	"Peptidase S41A, C-terminal protease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0005515|protein binding||GO:0008236|serine-type peptidase activity	NA
PtpAffx.11938.1.A1_at	B	B1S	POPTR_0006s12470	POPTR_0006s12470 (6:324)	scaffold_6:9611784-9612578(+) (9)	NA	D2HWM5	E3 ubiquitin-protein ligase RFWD3	AT5G03450.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g39850.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119396.1.A1_at	B	B1S	POPTR_0017s11560	POPTR_0017s11560 (8:626)	NA	NA	Q96SZ5	2-aminoethanethiol dioxygenase	AT5G39890.1	Protein of unknown function (DUF1637) 	LOC_Os05g51470.1	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g009090.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.119397.1.A1_at	B	B1S	POPTR_0003s14060	POPTR_0003s14060 (8:188)	NA	NA	NA	NA	AT4G10970.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g28690.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119420.1.A1_at	B	B1S	POPTR_0005s12730	POPTR_0005s12730 (8:352)	scaffold_5:9495841-9496304(+) (10)	NA	O23210	Scarecrow-like protein 15	AT4G36710.1	GRAS family transcription factor 	LOC_Os02g44360.1	"scarecrow transcription factor family protein, putative, expressed"	Medtr8g093620.1	GRAS transcription factor; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119425.1.A1_at	B	B1S	POPTR_0012s00200	POPTR_0012s00200 (1:24)	scaffold_12:3233-3383(+) (11)	NA	Q9URX1	UNC93-like protein C922.05c	AT1G18010.1	Major facilitator superfamily protein 	LOC_Os04g01520.1	expressed protein	Medtr3g122110.1	"Protein of unknown function DUF895, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119471.1.A1_at	B	B1S	POPTR_0013s13910	POPTR_0013s13910 (8:126)	NA	NA	Q9SDT1	"Protochlorophyllide reductase, chloroplastic"	AT1G03630.1	protochlorophyllide oxidoreductase C 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119504.1.A1_at	B	B1S	POPTR_0002s10440	POPTR_0002s10440 (5:745)	NA	NA	NA	NA	AT5G49710.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g54080.2	expressed protein	Medtr5g074990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119513.1.A1_at	B	B1S	POPTR_0010s10250	POPTR_0010s10250 (8:189)	NA	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11952.1.S1_a_at	B	B1S	POPTR_0010s17030	POPTR_0010s17030 (8:1216)	NA	NA	Q60352	Uncharacterized protein MJ0044	AT1G26640.1	Amino acid kinase family protein 	LOC_Os01g55890.1	"amino acid kinase, putative, expressed"	Medtr5g045920.1	"T24P13.2, putative "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.11961.1.A1_at	B	B1S	POPTR_0009s10070	POPTR_0009s10070 (5:309)	NA	NA	Q0JHU5	Elicitor-responsive protein 1	AT4G34150.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os06g43190.1	"retrotransposon protein, putative, unclassified, expressed"	AC151525_7.1	C2 AC151525.18 31176-29302 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11975.1.A1_at	B	B1S	POPTR_0010s01490	POPTR_0010s01490 (5:89)	NA	NA	P11182	"Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial"	AT3G06850.2	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os01g21160.2	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.11980.2.S1_at	B	B2S	POPTR_0017s10010	POPTR_0017s10010 (4:1249)//POPTR_0017s10020 (3:804)	scaffold_17:8849021-8852324(-) (9)	NA	Q9LSD8	Membrane-anchored ubiquitin-fold protein 4	AT3G26980.1	membrane-anchored ubiquitin-fold protein 4 precursor 	LOC_Os04g32270.1	"membrane-anchored ubiquitin-fold protein, putative, expressed"	Medtr7g148240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11994.3.A1_a_at	B	B1S	POPTR_0010s12250	POPTR_0010s12250 (8:88)	scaffold_10:12299663-12299759(-) (11)	NA	NA	NA	AT1G14990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g42120.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120028.1.S1_at	B	B1S	POPTR_0010s10240	POPTR_0010s10240 (0:1577)	NA	NA	Q4TU14	E3 ubiquitin-protein ligase RHF1A	AT4G14220.1	RING-H2 group F1A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120066.1.S1_at	B	B1S	POPTR_0001s41720	POPTR_0001s41720 (8:1361)	NA	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.12009.1.A1_at	B	B1S	POPTR_0005s07540	POPTR_0005s07540 (4:462)	scaffold_5:5140682-5141575(-) (11)	NA	Q1LZ86	Monoacylglycerol lipase ABHD6	AT4G39955.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g42994.1	"hydrolase, putative, expressed"	Medtr3g101880.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12013.1.A1_at	B	B1S	POPTR_0004s04660	POPTR_0004s04660 (4:464)	scaffold_4:3414532-3416163(+) (9)	NA	Q9FKW0	Putative E3 ubiquitin-protein ligase RING1a	AT5G44280.1	RING 1A 	LOC_Os05g41795.1	"zinc finger C3HC4 type family protein, putative, expressed"	Medtr6g090070.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12016.2.S1_at	B	B1S	POPTR_0010s06620	POPTR_0010s06620 (8:2076)	NA	NA	P28643	"3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic"	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g30760.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.12034.1.A1_at	B	B1S	POPTR_0012s05250	POPTR_0012s05250 (2:194)	NA	NA	O95294	RasGAP-activating-like protein 1	AT3G18370.1	C2 domain-containing protein 	LOC_Os01g03820.1	"C2 domain containing protein, putative, expressed"	Medtr6g028380.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12035.1.A1_at	B	B1A	POPTR_0006s22490	POPTR_0006s22490 (8:447)	scaffold_6:21501341-21501863(-) (10)	NA	Q9SIH5	Probable F-box protein At1g60180	AT2G36090.1	F-box family protein 	LOC_Os04g33820.1	"OsFBX132 - F-box domain containing protein, expressed"	Medtr2g107460.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12036.3.S1_a_at	B	B1S	POPTR_0014s11390	POPTR_0014s11390 (0:126)	NA	NA	NA	NA	AT3G62370.1	heme binding 	LOC_Os03g19580.1	expressed protein	Medtr1g106510.1	hypothetical protein 	GO:0055114|oxidation reduction	GO:0020037|heme binding	NA
PtpAffx.12036.3.S1_at	B	B1S	POPTR_0014s11390	POPTR_0014s11390 (0:240)	NA	NA	NA	NA	AT3G62370.1	heme binding 	LOC_Os03g19580.1	expressed protein	Medtr1g106510.1	hypothetical protein 	GO:0055114|oxidation reduction	GO:0020037|heme binding	NA
PtpAffx.12044.2.S1_at	B	B1S	POPTR_0008s14340	POPTR_0008s14340 (7:355)	NA	NA	NA	NA	AT2G02180.1	tobamovirus multiplication protein 3 	LOC_Os10g39220.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120497.1.A1_at	B	B1S	POPTR_0013s02750	POPTR_0013s02750 (8:526)	NA	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120529.1.A1_at	B	B1S	POPTR_0013s11050	POPTR_0013s11050 (6:136)	scaffold_13:11706204-11710938(-) (11)	NA	NA	NA	AT1G22520.1	Domain of unknown function (DUF543) 	LOC_Os03g62420.1	expressed protein	Medtr3g012620.1	Protein of unknown function DUF543 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120559.1.A1_at	B	B3S	POPTR_0003s19870	POPTR_0178s00240 (0:319)//POPTR_0003s19870 (0:319)//POPTR_0178s00230 (0:318)	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g021730.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.12061.1.A1_at	B	B1S	POPTR_0003s19450	POPTR_0003s19450 (8:352)	scaffold_3:18171417-18171922(-) (11)	NA	P53416	Bibenzyl synthase	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	NA	GO:0008415|acyltransferase activity	NA
PtpAffx.120643.1.A1_at	B	B1S	POPTR_0008s10480	POPTR_0008s10480 (3:233)	NA	NA	Q54YA0	Probable ATP-citrate synthase	AT3G06650.1	ATP-citrate lyase B-1 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.120676.1.S1_at	B	B1S	POPTR_0012s02690	POPTR_0012s02690 (2:213)	NA	NA	Q5TYW4	Neuroblastoma-amplified sequence	AT5G24350.1	CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g13150.1	expressed protein	Medtr3g123460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120694.1.A1_at	B	B2A	POPTR_0009s04080	POPTR_0009s04080 (3:43)//POPTR_0009s04100 (3:43)	scaffold_9:4619549-4619726(-) (10)//scaffold_9:4630128-4630322(-) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G53810.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.120751.1.A1_at	B	B2S	POPTR_0012s13620	POPTR_0012s13630 (7:306)//POPTR_0012s13620 (7:306)	scaffold_12:13695221-13695623(-) (9)//scaffold_12:13703385-13703787(-) (9)	NA	O64900	(S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT2G45560.1	"cytochrome P450, family 76, subfamily C, polypeptide 1 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.120765.1.A1_at	B	B1S	POPTR_0003s05240	POPTR_0003s05240 (8:273)	NA	NA	NA	NA	AT1G15230.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g009250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120784.1.S1_at	B	B1S	POPTR_0008s09030	POPTR_0008s09030 (5:858)	scaffold_8:5599502-5600570(-) (11)	NA	P18160	Dual specificity protein kinase pyk1	AT1G14000.1	VH1-interacting kinase 	LOC_Os07g43900.1	"protein kinase domain containing protein, expressed"	Medtr5g099160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.120815.1.A1_at	B	B1S	POPTR_0008s19810	POPTR_0008s19810 (4:142)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120824.1.A1_at	B	B1S	POPTR_0003s03360	POPTR_0003s03360 (8:477)	NA	NA	NA	NA	AT4G17140.3	pleckstrin homology (PH) domain-containing protein 	LOC_Os02g27110.1	expressed protein	Medtr5g013980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120845.1.A1_at	B	B1S	POPTR_0007s02600	POPTR_0007s02600 (8:179)	NA	NA	Q99JY4	TraB domain-containing protein	AT1G05270.1	TraB family protein 	LOC_Os05g42010.1	"TraB family protein, putative, expressed"	Medtr6g059350.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120907.1.A1_at	B	B1S	POPTR_0001s23520	POPTR_0001s23520 (8:462)	NA	NA	Q86HW6	Probable serine/threonine-protein kinase DDB_G0276461	AT2G32850.2	Protein kinase superfamily protein 	LOC_Os02g37880.3	"cyclin G-associated kinase, putative, expressed"	Medtr8g115300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.120914.1.A1_at	B	B1S	POPTR_0018s14560	POPTR_0018s14560 (7:690)	NA	NA	P38605	Cycloartenol synthase	AT2G07050.1	cycloartenol synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr5g008860.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.120929.1.A1_at	B	B1A	POPTR_0010s07720	POPTR_0010s07720 (0:8)	scaffold_10:8707574-8707766(-) (11)	NA	Q03389	Eukaryotic translation initiation factor 4E-2	AT5G35620.1	Eukaryotic initiation factor 4E protein 	LOC_Os10g32970.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr1g065250.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
PtpAffx.120944.1.A1_at	B	B1S	POPTR_0001s14450	POPTR_0001s14450 (4:2033)	scaffold_1:11332130-11334449(+) (11)	NA	Q6NU40	Chromosome transmission fidelity protein 18 homolog	AT1G04730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g15810.1	"AAA-type ATPase family protein, putative, expressed"	AC233100_4.1	"T1G11.3, putative AC233100.6 19559-16258 E EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.1210.2.S1_x_at	B	B1S	POPTR_0017s14310	POPTR_0017s14310 (1:902)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121082.1.A1_at	B	B1S	POPTR_0003s09710	POPTR_0003s09710 (8:410)	scaffold_3:10969099-10969657(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121088.2.A1_a_at	B	B1S	POPTR_0001s14840	POPTR_0001s14840 (4:284)	scaffold_1:11663741-11665945(+) (11)	NA	NA	NA	AT1G15900.1	unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121092.1.A1_at	B	B1S	POPTR_0013s03770	POPTR_0013s03770 (4:1544)	scaffold_13:2425081-2434625(-) (11)	NA	Q9LIK5	Calmodulin-like protein 11	AT3G22930.1	calmodulin-like 11 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr7g034910.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1211.1.A1_at	B	B2A	POPTR_0004s07840	POPTR_0004s07840 (8:326)//POPTR_0004s07880 (8:326)	scaffold_4:6422522-6422995(+) (11)//scaffold_4:6441892-6442365(-) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr5g084780.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121254.2.A1_at	B	B1S	POPTR_0008s17100	POPTR_0008s17100 (0:237)	NA	NA	Q03389	Eukaryotic translation initiation factor 4E-2	AT5G35620.1	Eukaryotic initiation factor 4E protein 	LOC_Os10g32970.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr1g065250.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
PtpAffx.121304.1.S1_at	B	B1S	POPTR_0010s14810	POPTR_0010s14810 (6:59)	NA	NA	Q9JHB5	Translin-associated protein X	AT2G03780.1	Translin family protein 	LOC_Os01g16100.1	"translin, putative, expressed"	Medtr8g077500.1	Translin 	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.121327.1.A1_at	B	B1A	POPTR_0004s14230	POPTR_0004s14230 (8:306)	NA	NA	Q9C810	PHD finger protein At1g33420	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g65600.1	"PHD-finger domain containing protein, putative, expressed"	Medtr4g041260.1	"Protein of unknown function UPF0054; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121340.2.A1_at	B	B1S	POPTR_0019s05790	POPTR_0019s05790 (0:382)	NA	NA	Q59MG1	Diphthamide biosynthesis protein 1	AT5G62030.1	diphthamide synthesis DPH2 family protein 	LOC_Os02g57050.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr5g008080.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121361.1.S1_at	B	B1S	POPTR_0011s02370	POPTR_0011s02370 (4:1010)	scaffold_11:2274832-2276012(-) (10)	NA	P07991	Ornithine aminotransferase	AT5G46180.1	ornithine-delta-aminotransferase 	LOC_Os03g44150.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121399.3.A1_a_at	B	B3S	POPTR_0001s13245	POPTR_0022s00365 (2:89)//POPTR_0001s13245 (2:59)//POPTR_0006s18820 (0:9)	scaffold_17:6005201-6005415(+) (11)//scaffold_6:17526674-17526888(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121537.1.A1_at	B	B1S	POPTR_0001s07870	POPTR_0001s07870 (7:214)	NA	NA	Q8H1H9	Primary amine oxidase	AT4G12290.1	Copper amine oxidase family protein 	LOC_Os04g20164.1	"amine oxidase precursor, putative, expressed"	Medtr3g109760.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.121552.1.A1_at	B	B1S	POPTR_0015s04770	POPTR_0015s04770 (7:464)	NA	NA	NA	NA	AT1G18290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g03080.1	expressed protein	Medtr4g154720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121586.1.A1_at	B	B1S	POPTR_0002s09610	POPTR_0002s09610 (3:433)	NA	NA	Q9SYT0	Annexin D1	AT1G35720.1	annexin 1 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.121653.1.A1_at	B	B1S	POPTR_0004s16710	POPTR_0004s16710 (5:191)	scaffold_4:17097215-17097593(-) (11)	NA	Q6DKP5	WD repeat-containing protein 13	AT2G16405.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g56860.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086290.1	"WD repeat-containing protein 5, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121670.1.A1_at	B	B1A	POPTR_0001s31470	POPTR_0001s31470 (6:727)	NA	NA	P42734	Probable cinnamyl alcohol dehydrogenase 9	AT4G39330.1	cinnamyl alcohol dehydrogenase 9 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr4g141720.1	"Alcohol dehydrogenase, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.121719.1.A1_at	B	B1S	POPTR_0001s44180	POPTR_0001s44180 (1:26)	NA	NA	Q94B77	Formin-like protein 5	AT5G54650.2	formin homology5 	LOC_Os07g36150.1	"formin-like protein 3 precursor, putative, expressed"	Medtr4g111250.1	Pyridoxal-dependent decarboxylase; Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121754.1.A1_at	B	B1S	POPTR_0008s01010	POPTR_0008s01010 (6:350)	scaffold_8:476452-477513(-) (10)	NA	P52706	(R)-mandelonitrile lyase 1	AT1G73050.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os06g44540.1	"HOTHEAD precursor, putative, expressed"	Medtr4g023240.1	Alcohol oxidase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.121790.1.A1_at	B	B1S	POPTR_0006s27720	POPTR_0006s27720 (8:341)	NA	NA	NA	NA	AT5G11000.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr3g138030.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121803.1.S1_at	B	B1S	POPTR_0025s00700	POPTR_0025s00700 (8:225)	NA	NA	Q6NZ09	Proteasomal ubiquitin receptor ADRM1	AT2G26590.3	regulatory particle non-ATPase 13 	LOC_Os05g51640.2	"adhesion regulating molecule family, putative, expressed"	Medtr4g161200.1	Adhesion regulating molecule 	NA	NA	GO:0005737|cytoplasm||GO:0005634|nucleus
PtpAffx.121936.1.S1_at	B	B2A	POPTR_0007s07890	POPTR_0010s03530 (0:911)//POPTR_0007s07890 (1:62)	NA	NA	P36428	Alanyl-tRNA synthetase	AT1G50200.1	Alanyl-tRNA synthetase 	LOC_Os10g10244.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr4g101440.2	"Alanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12198.1.A1_at	B	B1S	POPTR_0001s13930	POPTR_0001s13930 (4:203)	scaffold_1:10983358-10984875(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122103.1.S1_at	B	B1S	POPTR_0012s13410	POPTR_0012s13410 (8:450)	NA	NA	Q4FE45	E3 ubiquitin-protein ligase XBAT33	AT5G07270.1	XB3 ortholog 3 in Arabidopsis thaliana 	LOC_Os10g37730.1	"pollen ankyrin, putative, expressed"	AC146807_5.1	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122315.1.S1_at	B	B1S	POPTR_0012s11300	POPTR_0012s11300 (4:522)	scaffold_12:11796070-11796795(-) (9)	NA	Q66X93	Staphylococcal nuclease domain-containing protein 1	AT5G07350.1	TUDOR-SN protein 1 	LOC_Os02g32350.2	"TUDOR protein with multiple SNc domains, putative, expressed"	Medtr3g151500.1	Tudor; Staphylococcus nuclease subtype 	NA	"GO:0016788|""hydrolase activity, acting on ester bonds""||GO:0003676|nucleic acid binding"	NA
PtpAffx.12242.1.A1_at	B	B1S	POPTR_0019s04150	POPTR_0019s04150 (8:489)	NA	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143160.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.12263.3.S1_at	B	B1S	POPTR_0009s05840	POPTR_0009s05840 (8:266)	NA	NA	Q41364	"2-oxoglutarate/malate translocator, chloroplastic"	AT5G12860.1	dicarboxylate transporter 1 	LOC_Os12g33080.1	"2-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed"	Medtr2g009260.1	Sodium/sulphate symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12266.1.A1_at	B	B1S	POPTR_0015s05710	POPTR_0015s05710 (0:294)	NA	NA	Q9SH59	Reticulon-like protein B3	AT1G64090.1	Reticulan like protein B3 	LOC_Os05g45050.2	"reticulon domain containing protein, putative, expressed"	Medtr1g126140.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.12268.1.S1_at	B	B1S	POPTR_0010s08960	POPTR_0010s08960 (3:1827)	scaffold_10:9745899-9748824(+) (11)	NA	NA	NA	AT4G14615.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52825.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g08410.1	expressed protein	AC233668_32.1	hypothetical protein AC233668.2 139490-141473 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122738.1.S1_at	B	B1S	POPTR_0015s05310	POPTR_0015s05310 (5:452)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122748.1.S1_at	B	B1S	POPTR_0010s05310	POPTR_0010s05310 (7:314)	NA	NA	NA	NA	AT1G60790.1	Plant protein of unknown function (DUF828) 	LOC_Os04g42900.1	expressed protein	Medtr5g035110.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122763.1.S1_at	B	B1S	POPTR_0005s07730	POPTR_0005s07730 (8:355)	NA	NA	A8KBE0	Oxidation resistance protein 1	AT4G39870.2	TLD-domain containing nucleolar protein 	LOC_Os02g51770.1	"TLD family protein, putative, expressed"	Medtr3g101690.2	TLDc 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122841.1.S1_at	B	B1S	POPTR_0006s00580	POPTR_0006s00580 (0:126)	NA	NA	NA	NA	AT5G47740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os06g18820.1	"serine threonine kinase, putative, expressed"	AC233669_2.1	hypothetical protein AC233669.2 8999-10267 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122855.1.S1_at	B	B1S	POPTR_0011s15640	POPTR_0011s15640 (7:561)	NA	NA	Q9LPI7	NAC domain-containing protein 12	AT1G32770.1	NAC domain containing protein 12 	LOC_Os08g02300.1	"no apical meristem protein, putative, expressed"	Medtr4g041220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.12287.1.S1_at	B	B2S	POPTR_0013s11110	POPTR_0013s11110 (7:119)//POPTR_0013s11100 (6:119)	NA	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65100.1	"peptide transporter, putative, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.122871.1.S1_at	B	B1S	POPTR_0004s01500	POPTR_0004s01500 (1:348)	NA	NA	Q8W4K1	tRNA wybutosine-synthesizing protein 2/3/4	AT4G04670.1	Met-10+ like family protein / kelch repeat-containing protein 	LOC_Os07g33100.1	"uncharacterized ACR, COG1590 family protein, expressed"	Medtr8g146780.1	Protein of unknown function Met10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122963.1.A1_at	B	B1S	POPTR_0007s14410	POPTR_0007s14410 (1:51)	NA	NA	B0XN12	"Probable glucan 1,3-beta-glucosidase A"	NA	NA	LOC_Os08g37750.1	"cellulase, putative, expressed"	Medtr3g102270.1	"Glycoside hydrolase, family 5; Actin-crosslinking proteins "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122979.1.A1_at	B	B1S	POPTR_0017s00510	POPTR_0017s00510 (2:566)	NA	NA	Q945S8	Histone-lysine N-methyltransferase ASHH3	AT2G44150.1	histone-lysine N-methyltransferase ASHH3 	LOC_Os09g13740.2	"SET domain containing protein, expressed"	Medtr6g070840.1	Nuclear protein SET; SET-related region; AWS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122999.2.S1_at	B	B1S	POPTR_0018s08850	POPTR_0018s08850 (7:381)	NA	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123007.1.A1_at	B	B2S	POPTR_0011s06220	POPTR_0011s06220 (0:163)//POPTR_0011s06340 (0:163)	NA	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12301.1.A1_at	B	B1S	POPTR_0001s12330	POPTR_0001s12330 (6:219)	NA	NA	NA	NA	AT5G44670.1	Domain of unknown function (DUF23) 	LOC_Os06g22330.1	expressed protein	Medtr8g084210.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123045.1.A1_at	B	B1S	POPTR_0017s04920	POPTR_0017s04920 (0:155)	NA	NA	NA	NA	AT5G62270.1	BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g58750.1	expressed protein	Medtr4g089720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123087.1.S1_at	B	B1A	POPTR_0019s11540	POPTR_0019s11540 (6:389)	NA	NA	Q9S7H5	Scarecrow-like protein 21	AT2G04890.1	SCARECROW-like 21 	LOC_Os04g35250.1	"MONOCULM 1, putative"	Medtr1g122330.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123091.1.S1_at	B	B1S	POPTR_0014s09370	POPTR_0014s09370 (3:1050)	NA	NA	Q6IQ49	UPF0667 protein C1orf55	AT4G01000.1	Ubiquitin-like superfamily protein 	LOC_Os01g48930.1	"splicing factor-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123118.1.A1_at	B	B1A	POPTR_0018s08870	POPTR_0018s08870 (6:528)	NA	NA	NA	NA	AT2G20120.1	Protein of unknown function (DUF502) 	LOC_Os05g45280.1	"protein of unknown function DUF502 domain containing protein, expressed"	Medtr4g158960.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12314.1.A1_at	B	B1S	POPTR_0001s25200	POPTR_0001s25200 (8:69)	NA	NA	Q9LNW3	Protein phosphatase 2C 3	AT1G07430.1	highly ABA-induced PP2C gene 2 	LOC_Os05g38290.2	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123164.1.A1_at	B	B1S	POPTR_0008s18100	POPTR_0008s18100 (7:620)	NA	NA	O64511	Protein TWIN LOV 1	AT2G02710.2	PAS/LOV protein B 	LOC_Os01g09120.1	"Twin LOV 1, putative, expressed"	Medtr5g039450.1	PAS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	NA
PtpAffx.123193.2.S1_at	B	B1S	POPTR_0006s25160	POPTR_0006s25160 (0:85)	NA	NA	Q9M077	Serine/threonine-protein kinase Aurora-1	AT4G32830.1	ataurora1 	LOC_Os01g09580.2	"CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g128170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.123280.1.S1_at	B	B1S	POPTR_0001s24370	POPTR_0001s24370 (7:859)	NA	NA	NA	NA	AT2G39570.1	ACT domain-containing protein 	LOC_Os05g02220.3	"ACT domain containing protein, expressed"	Medtr2g114630.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.12332.1.A1_at	B	B1S	POPTR_0004s09410	POPTR_0004s09410 (5:295)	scaffold_4:7968767-7969663(-) (9)	NA	A2ZVY5	Zinc finger CCCH domain-containing protein 9	AT1G68200.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g45730.1	zinc finger C-x8-C-x5-C-x3-H type family protein	AC235678_14.1	"Zinc finger, CCCH-type AC235678.1 77770-76962 F EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.123370.1.S1_at	B	B1S	POPTR_0008s04680	POPTR_0008s04680 (4:53)	NA	NA	Q86X76	Nitrilase homolog 1	AT4G08790.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein 	LOC_Os12g31830.1	"nitrilase, putative, expressed"	Medtr1g146400.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.123397.1.A1_at	B	B1S	POPTR_0018s11310	POPTR_0018s11310 (6:546)	NA	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.12342.3.S1_at	B	B1S	POPTR_0003s12870	POPTR_0003s12870 (0:193)	NA	NA	Q7XSQ9	Probable aquaporin PIP1-2	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.12347.1.A1_at	B	B1A	POPTR_0018s00911	POPTR_0018s00911 (1:92)	scaffold_18:848361-848810(+) (9)	NA	Q9SHJ0	Probable CCR4-associated factor 1 homolog 1	AT1G06450.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.12373.1.A1_at	B	B1S	POPTR_0005s26460	POPTR_0005s26460 (8:342)	NA	NA	O65351	Subtilisin-like protease	AT1G20160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30458.1	"subtilisin-like protease, putative, expressed"	Medtr3g139400.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.123832.1.A1_at	B	B1A	POPTR_0067s00270	POPTR_0067s00270 (6:318)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12385.1.A1_at	B	B1S	POPTR_0001s31400	POPTR_0001s31400 (5:278)	NA	NA	Q9BRX9	WD repeat domain-containing protein 83	AT5G64730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g33860.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g141700.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12394.1.A1_at	B	B1S	POPTR_0018s02370	POPTR_0018s02370 (3:236)	NA	NA	Q9SKZ2	Probable CCR4-associated factor 1 homolog 7	AT2G32070.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.124002.1.S1_at	B	B1S	POPTR_0018s01660	POPTR_0018s01660 (7:489)	NA	NA	O48781	SPX domain-containing protein 2	AT2G26660.1	SPX domain gene 2 	LOC_Os06g40120.1	"SPX domain containing protein, putative, expressed"	Medtr1g013760.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124071.1.S1_at	B	B1S	POPTR_0003s18190	POPTR_0003s18190 (7:513)	NA	NA	Q9SAG8	"Chaperone protein dnaJ 8, chloroplastic"	AT1G80920.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os06g44160.1	"heat shock protein DnaJ, putative, expressed"	Medtr4g021650.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.12410.1.S1_at	B	B1S	POPTR_0001s38920	POPTR_0001s38920 (7:2625)	NA	NA	Q8L9S1	60S ribosomal protein L18a-1	AT1G17080.1	Ribosomal protein L18ae family 	LOC_Os05g49020.1	"60S ribosomal protein L18a-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12419.1.A1_at	B	B1S	POPTR_0016s04300	POPTR_0016s04300 (0:878)	NA	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT4G20990.1	alpha carbonic anhydrase 4 	LOC_Os08g36630.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124219.1.S1_s_at	B	B1A	POPTR_0007s00790	POPTR_0007s00790 (8:147)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12427.1.S1_at	B	B1S	POPTR_0004s00590	POPTR_0004s00590 (4:3912)	NA	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G22150.1	plant UBX domain-containing protein 3 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12427.2.S1_at	B	B1S	POPTR_0004s00620	POPTR_0004s00620 (0:6)	scaffold_4:238319-238371(+) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G22150.1	plant UBX domain-containing protein 3 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124319.2.S1_at	B	B2S	POPTR_0018s03930	POPTR_0018s03950 (5:378)//POPTR_0018s03930 (7:364)	NA	NA	P73627	Uncharacterized protein sll1770	AT5G24810.1	ABC1 family protein 	LOC_Os06g48770.1	"OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed"	Medtr1g010020.1	"ABC-1; Penicillin-binding protein, transpeptidase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124319.3.S1_at	B	B1S	POPTR_0018s03950	POPTR_0018s03950 (0:166)	NA	NA	P73627	Uncharacterized protein sll1770	AT5G24810.1	ABC1 family protein 	LOC_Os06g48770.1	"OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed"	Medtr1g010020.1	"ABC-1; Penicillin-binding protein, transpeptidase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12433.1.S1_at	B	B1A	POPTR_0003s05700	POPTR_0003s05700 (5:305)	scaffold_3:7093531-7094308(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124385.1.S1_at	B	B1S	POPTR_0002s00330	POPTR_0002s00330 (8:122)	NA	NA	Q9SRE5	Uncharacterized protein At1g76660	AT1G76660.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). 	LOC_Os01g01390.4	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12439.9.S1_at	B	B1S	POPTR_0008s16840	POPTR_0008s16840 (5:44)	scaffold_8:11325666-11325737(-) (11)	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os02g40880.1	"ribosomal protein L14, putative, expressed"	Medtr8g138420.1	Ribosomal protein L14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.124498.1.S1_at	B	B1S	POPTR_0011s03500	POPTR_0011s03500 (8:332)	NA	NA	Q9LK57	"Pentatricopeptide repeat-containing protein At3g13160, mitochondrial"	AT3G13160.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g57630.3	"pentatricopeptide containing protein, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124545.1.S1_at	B	B1S	POPTR_0002s23170	POPTR_0002s23170 (5:93)	NA	NA	P11435	Carboxyvinyl-carboxyphosphonate phosphorylmutase	AT2G43180.1	Phosphoenolpyruvate carboxylase family protein 	LOC_Os04g42580.1	"carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed"	Medtr7g005900.1	Isocitrate lyase and phosphorylmutase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124581.2.A1_at	B	B1S	POPTR_0005s10450	POPTR_0005s10450 (1:29)	NA	NA	Q9BSD7	Nucleoside-triphosphatase C1orf57	AT5G66005.3	Expressed protein 	NA	NA	Medtr5g024190.1	AAA ATPase 	NA	GO:0016740|transferase activity||GO:0005524|ATP binding	NA
PtpAffx.124616.2.S1_at	B	B1S	POPTR_0004s10100	POPTR_0004s10100 (8:1425)	NA	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g024690.1	"Protein kinase; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.124679.1.S1_at	B	B1S	POPTR_0006s04310	POPTR_0006s04310 (8:716)	NA	NA	O14357	N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein gpi1	AT3G57170.1	N-acetylglucosaminyl transferase component family protein / Gpi1 family protein 	LOC_Os05g22370.2	"N-acetylglucosaminyl transferase component, putative, expressed"	Medtr7g107670.1	N-acetylglucosaminyl transferase component 	GO:0006506|GPI anchor biosynthetic process	GO:0017176|phosphatidylinositol N-acetylglucosaminyltransferase activity	GO:0016021|integral to membrane
PtpAffx.124705.1.S1_at	B	B1S	POPTR_0010s14390	POPTR_0010s14390 (8:1182)	NA	NA	Q42679	S-adenosylmethionine decarboxylase proenzyme	AT3G25570.2	Adenosylmethionine decarboxylase family protein 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.124716.1.S1_at	B	B1S	POPTR_0012s13100	POPTR_0012s13100 (6:899)	NA	NA	P29144	Tripeptidyl-peptidase 2	AT4G20850.1	tripeptidyl peptidase ii 	LOC_Os02g44520.1	"OsSub19 - Putative Subtilisin homologue, expressed"	Medtr1g127030.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.124732.1.S1_at	B	B1S	POPTR_0019s09350	POPTR_0019s09350 (0:112)	NA	NA	NA	NA	AT2G40815.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	NA	NA	Medtr5g077910.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124817.1.S1_at	B	B1S	POPTR_0001s02670	POPTR_0001s02670 (7:296)	NA	NA	Q8AVI4	Leucine-rich repeat protein SHOC-2	AT4G35470.1	plant intracellular ras group-related LRR 4 	LOC_Os10g42190.2	"leucine rich repeat containing protein, expressed"	Medtr8g102800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.124819.1.S1_at	B	B1S	POPTR_0015s07250	POPTR_0015s07250 (1:606)	NA	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G18670.1	Protein kinase superfamily protein 	LOC_Os07g40550.2	"IBS1, putative, expressed"	Medtr7g011090.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.124859.1.S1_at	B	B1S	POPTR_0001s20860	POPTR_0001s20860 (0:62)	scaffold_1:19088633-19089087(-) (10)	NA	Q8IUF1	COBW domain-containing protein 2	AT1G80480.1	plastid transcriptionally active 17 	LOC_Os02g55630.1	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124870.1.S1_at	B	B1S	POPTR_0008s21670	POPTR_0008s21670 (6:414)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125014.1.S1_at	B	B1S	POPTR_0002s22380	POPTR_0002s22380 (0:79)	NA	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125017.1.S1_at	B	B1S	POPTR_0018s01990	POPTR_0018s01990 (0:640)	NA	NA	Q949Y3	Bifunctional purple acid phosphatase 26	AT5G34850.1	purple acid phosphatase 26 	LOC_Os06g43640.2	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.125021.1.S1_at	B	B1S	POPTR_0009s07920	POPTR_0009s07920 (5:941)	NA	NA	C0LGU7	Probable LRR receptor-like serine/threonine-protein kinase At5g45840	AT5G45840.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr3g094640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.125034.1.S1_at	B	B1S	POPTR_0011s04390	POPTR_0011s04390 (0:236)	NA	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.125107.1.S1_at	B	B3S	POPTR_0007s04500	POPTR_0007s04500 (8:644)//POPTR_0007s04520 (2:640)//POPTR_0007s04510 (5:640)	NA	NA	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.125362.1.S1_at	B	B3S	POPTR_0013s11410	POPTR_0013s11440 (1:1583)//POPTR_0013s11430 (0:1445)//POPTR_0013s11410 (8:587)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125390.1.S1_at	B	B1S	POPTR_0019s15300	POPTR_0019s15300 (4:320)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125400.1.S1_at	B	B1S	POPTR_0003s15120	POPTR_0003s15120 (0:88)	NA	NA	Q9C8Z4	Uncharacterized protein At3g06530	AT3G06530.2	ARM repeat superfamily protein 	LOC_Os04g46310.1	"HEAT repeat family protein, putative, expressed"	Medtr5g099720.1	"BP28, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125438.1.S1_at	B	B1S	POPTR_0009s09990	POPTR_0009s09990 (7:1204)	NA	NA	NA	NA	AT2G01640.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os12g14110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125457.2.S1_at	B	B1S	POPTR_0006s29120	POPTR_0006s29120 (3:2225)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125484.1.S1_at	B	B1S	POPTR_0012s02930	POPTR_0012s02930 (5:200)	NA	NA	P30222	"Small heat shock protein, chloroplastic"	AT4G27670.1	heat shock protein 21 	LOC_Os03g14180.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr3g122960.2	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125498.1.S1_at	B	B2S	POPTR_0001s37160	POPTR_0001s37160 (8:371)//POPTR_0001s37170 (7:370)	NA	NA	Q9SZ11	Probable glycerophosphoryl diester phosphodiesterase 2	AT4G26690.1	PLC-like phosphodiesterase family protein 	LOC_Os04g39610.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr5g101680.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.12554.1.A1_at	B	B1S	POPTR_0017s10510	POPTR_0017s10510 (8:475)	NA	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G50180.1	Protein kinase superfamily protein 	LOC_Os02g38080.2	"protein kinase domain containing protein, expressed"	Medtr3g114810.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.125555.1.A1_at	B	B2S	POPTR_0003s09980	POPTR_0010s20830 (4:492)//POPTR_0003s09980 (4:475)	NA	NA	NA	NA	AT4G19040.1	ENHANCED DISEASE RESISTANCE 2 	LOC_Os10g31770.1	"START domain containing protein, expressed"	Medtr5g027400.2	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125573.1.A1_at	B	B1S	POPTR_0005s08200	POPTR_0005s08200 (1:294)	NA	NA	NA	NA	AT4G39690.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane protein Mitofilin (InterPro:IPR019133); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g54410.1	expressed protein	Medtr4g140510.1	hypothetical protein 	NA	NA	GO:0031305|integral to mitochondrial inner membrane
PtpAffx.125610.1.A1_at	B	B1S	POPTR_0005s11880	POPTR_0005s11880 (5:648)	NA	NA	Q6S001	Kinesin-related protein 11	AT5G66310.1	ATP binding microtubule motor family protein 	LOC_Os02g43130.1	"kinesin motor domain containing protein, expressed"	Medtr5g021580.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.125645.1.A1_at	B	B1S	POPTR_0007s02160	POPTR_0007s02160 (4:511)	NA	NA	O04922	Probable glutathione peroxidase 2	AT2G31570.1	glutathione peroxidase 2 	LOC_Os11g18170.1	"glutathione peroxidase, putative, expressed"	Medtr4g156860.1	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
PtpAffx.125665.1.A1_at	B	B1S	POPTR_0004s23630	POPTR_0004s23630 (6:371)	NA	NA	NA	NA	AT4G18530.1	Protein of unknown function (DUF707) 	LOC_Os01g69050.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g005170.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125674.1.A1_at	B	B1S	POPTR_0006s04660	POPTR_0006s04660 (0:0)	scaffold_6:3204850-3205365(+) (9)	NA	Q8RY99	"DNA repair protein recA homolog 2, mitochondrial"	AT3G10140.1	RECA homolog 3 	LOC_Os01g71690.2	"recA protein, expressed"	Medtr7g108080.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125754.1.S1_at	B	B1S	POPTR_0001s31380	POPTR_0001s31380 (5:400)	NA	NA	NA	NA	AT5G53590.1	SAUR-like auxin-responsive protein family  	LOC_Os02g52990.1	"OsSAUR12 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g144190.1	"auxin-induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125775.1.A1_at	B	B1S	POPTR_0002s25060	POPTR_0002s25060 (8:500)	NA	NA	Q9LSE8	Putative peptide/nitrate transporter At3g25280	AT3G25280.1	Major facilitator superfamily protein 	LOC_Os06g38294.1	"peptide transporter PTR2, putative, expressed"	Medtr7g046220.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.125778.1.A1_at	B	B1S	POPTR_0009s08490	POPTR_0009s08490 (8:234)	NA	NA	Q04212	D-arabinose 1-dehydrogenase	AT4G33670.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os12g29760.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g121930.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.1258.8.A1_at	B	B1S	POPTR_0003s12100	POPTR_0003s12100 (5:1537)	NA	NA	Q5R831	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT4G23010.1	UDP-galactose transporter 2 	LOC_Os03g02670.2	"transporter family protein, putative, expressed"	Medtr7g083930.1	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125857.1.A1_at	B	B1S	POPTR_0013s11170	POPTR_0013s11170 (8:396)	scaffold_13:11842078-11842567(-) (9)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os05g35650.2	"peptide transporter PTR2, putative, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.125862.1.A1_at	B	B1S	POPTR_0005s11490	POPTR_0005s11490 (7:532)	NA	NA	P83332	Thaumatin-like protein 1	AT4G36010.2	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr5g022250.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125873.1.A1_at	B	B1S	POPTR_0001s23670	POPTR_0001s23670 (8:519)	NA	NA	Q91YT2	RING finger protein 185	AT2G44410.1	RING/U-box superfamily protein 	LOC_Os01g61420.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g031580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125896.1.A1_at	B	B1S	POPTR_0005s15370	POPTR_0005s15370 (2:341)	NA	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38260.1	Protein kinase superfamily protein 	LOC_Os01g49614.1	"Protein kinase domain containing protein, expressed"	Medtr7g093620.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.125939.1.A1_at	B	B1S	POPTR_0007s10820	POPTR_0007s10820 (6:487)	scaffold_7:10985453-10986098(-) (9)	NA	NA	NA	AT4G34090.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g01920.1	expressed protein	Medtr7g127140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12605.1.A1_at	B	B1S	POPTR_0005s20830	POPTR_0005s20830 (4:1318)	NA	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126068.1.S1_at	B	B1S	POPTR_0005s25870	POPTR_0005s25870 (1:316)	NA	NA	Q9FQ03	5'-3' exoribonuclease 3	AT1G75660.1	5'-3' exoribonuclease 3 	LOC_Os01g65220.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr4g079110.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.12609.1.S1_at	B	B2S	POPTR_0014s02560	POPTR_1203s00200 (7:83)//POPTR_0014s02560 (7:51)	scaffold_14:2140651-2140734(-) (11)	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G42830.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g01350.1	"transferase family protein, putative, expressed"	Medtr3g147460.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.1263.5.S1_at	B	B1S	POPTR_0008s20770	POPTR_0008s20770 (6:98)	NA	NA	P24805	Stem-specific protein TSJT1	AT5G19140.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os12g05050.1	"stem-specific protein TSJT1, putative, expressed"	AC233674_1.1	"Stem-specific protein TSJT1, related AC233674.1 2329-1 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1263.8.S1_at	B	B1S	POPTR_0008s20770	POPTR_0008s20770 (1:620)	NA	NA	P24805	Stem-specific protein TSJT1	AT5G19140.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os12g05050.1	"stem-specific protein TSJT1, putative, expressed"	AC233674_1.1	"Stem-specific protein TSJT1, related AC233674.1 2329-1 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126427.1.S1_at	B	B2S	POPTR_0017s03080	POPTR_0017s03080 (8:279)//POPTR_0017s03070 (2:207)	scaffold_17:2225914-2228505(-) (10)	NA	NA	NA	AT3G03440.1	ARM repeat superfamily protein 	NA	NA	Medtr5g087020.1	"armadillo/beta-catenin repeat family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.10.S1_at	B	B1S	POPTR_0009s15030	POPTR_0009s15030 (5:188)	NA	NA	Q9FK81	Uncharacterized protein At5g22580	AT5G22580.1	Stress responsive A/B Barrel Domain 	LOC_Os11g05290.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126789.1.S1_at	B	B1S	POPTR_0001s22350	POPTR_0001s22350 (8:568)	scaffold_1:20972438-20972990(-) (9)	NA	NA	NA	AT5G22090.2	Protein of unknown function (DUF3049) 	LOC_Os03g49830.1	expressed protein	Medtr4g067120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126815.1.S1_at	B	B1S	POPTR_0005s06090	POPTR_0005s06090 (7:1096)	NA	NA	Q7XKV4	Beta-glucosidase 12	AT5G24550.1	beta glucosidase 32 	LOC_Os04g39880.1	"Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.126902.1.A1_at	B	B1A	POPTR_0002s01380	POPTR_0002s01380 (5:315)	scaffold_2:708044-719369(-) (11)	NA	NA	NA	AT2G17080.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os08g43980.1	"carrier, putative"	Medtr4g096070.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126904.1.A1_at	B	B1S	POPTR_0019s10050	POPTR_0019s10050 (7:442)	NA	NA	NA	NA	AT2G21195.1	unknown protein; Has 28 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g16150.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126966.1.A1_at	B	B1S	POPTR_0006s09550	POPTR_0006s09550 (5:417)	scaffold_6:7029761-7030250(+) (9)	NA	Q07204	"Fructose-1,6-bisphosphatase, chloroplastic"	AT3G54050.2	high cyclic electron flow 1 	LOC_Os03g16050.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.126981.1.A1_at	B	B1S	POPTR_0001s08200	POPTR_0001s08200 (7:295)	NA	NA	Q9FZ06	Armadillo repeat-containing kinesin-like protein 3	AT1G12430.1	armadillo repeat kinesin 3 	LOC_Os06g04560.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.127012.1.S1_at	B	B1S	POPTR_0001s32490	POPTR_0001s32490 (1:549)	NA	NA	Q9ZTS1	Probable methionyl-tRNA synthetase	AT4G13780.1	"methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative "	LOC_Os06g31210.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.127080.1.A1_at	B	B1S	POPTR_0005s17950	POPTR_0005s17950 (1:56)	NA	NA	Q9FUY6	MADS-box protein JOINTLESS	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os02g52340.1	"OsMADS22 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.127095.1.A1_at	B	B1S	POPTR_0007s04260	POPTR_0007s04260 (6:726)	scaffold_7:2573103-2573993(-) (11)	NA	Q941D6	Histone deacetylase 14	AT4G33470.1	histone deacetylase 14 	LOC_Os12g08220.1	"histone deacetylase, putative, expressed"	Medtr4g142910.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1271.1.A1_at	B	B1S	POPTR_0016s01740	POPTR_0016s01740 (8:466)	scaffold_16:793809-794337(-) (10)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21760.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g32010.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127191.1.A1_at	B	B1S	POPTR_0005s17090	POPTR_0005s17090 (8:434)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127269.1.A1_at	B	B1S	POPTR_0010s19850	POPTR_0010s19850 (8:855)	NA	NA	Q9FFK1	Syntaxin-31	AT5G05760.1	syntaxin of plants 31 	LOC_Os01g08400.1	"syntaxin, putative, expressed"	Medtr5g101030.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.127281.1.A1_at	B	B1S	POPTR_0013s08030	POPTR_0013s08030 (7:410)	NA	NA	Q94AI7	Protein TOPLESS	AT1G15750.4	Transducin family protein / WD-40 repeat family protein 	LOC_Os08g06480.1	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr2g126840.2	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127327.1.A1_at	B	B1S	POPTR_0010s24570	POPTR_0010s24570 (8:59)	NA	NA	NA	NA	AT4G18590.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g14980.2	"RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed"	Medtr7g127630.1	Replication factor A protein 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127344.1.A1_at	B	B1S	POPTR_0015s04000	POPTR_0015s04000 (0:65)	scaffold_15:3901509-3901721(+) (9)	NA	Q40392	TMV resistance protein N	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.127358.1.A1_at	B	B1S	POPTR_0005s09180	POPTR_0005s09180 (8:549)	NA	NA	Q93W54	Protein-S-isoprenylcysteine O-methyltransferase B	AT5G08335.1	Isoprenylcysteine carboxyl methyltransferase (ICMT) family  	LOC_Os04g51380.1	"protein-S-isoprenylcysteine O-methyltransferase. tax, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0006481|C-terminal protein amino acid methylation||GO:0044260|cellular macromolecule metabolic process	GO:0004671|protein-S-isoprenylcysteine O-methyltransferase activity	GO:0016021|integral to membrane
PtpAffx.127406.1.A1_at	B	B1S	POPTR_0005s06270	POPTR_0005s06270 (2:166)	scaffold_5:4126678-4127089(+) (10)	NA	Q9LXD9	Probable pectinesterase/pectinesterase inhibitor 51	AT5G09760.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g65790.1	"pectinesterase, putative, expressed"	Medtr4g142540.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.127420.1.A1_at	B	B1S	POPTR_0018s06150	POPTR_0018s06150 (6:147)	scaffold_18:5787431-5787730(+) (11)	NA	Q9T0K5	Leucine-rich repeat extensin-like protein 3	AT4G13340.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g41120.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr6g102080.1	Leucine-rich repeat 	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall||GO:0005515|protein binding	NA
PtpAffx.127439.1.A1_at	B	B1S	POPTR_0017s00750	POPTR_0017s00750 (3:385)	scaffold_19:3036745-3037120(+) (11)//scaffold_19:3051949-3052324(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr4g122180.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.127514.1.A1_at	B	B1S	POPTR_0016s08290	POPTR_0016s08290 (8:108)	scaffold_16:6099332-6099511(-) (11)	NA	Q9ZUT3	Protein ALUMINUM SENSITIVE 3	AT2G37330.1	aluminum sensitive 3 	LOC_Os05g02750.1	"ABC transporter, membrane-spanning/permease subunit, putative, expressed"	AC235022_6.1	Conserved hypothetical protein 245 AC235022.1 27547-25968 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127609.1.A1_at	B	B1S	POPTR_0006s13960	POPTR_0006s13960 (7:1043)	scaffold_6:11208093-11209420(-) (11)	NA	NA	NA	AT1G19240.1	unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g133030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127636.1.A1_at	B	B1S	POPTR_0014s15480	POPTR_0014s15480 (0:0)	scaffold_14:11535041-11535251(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr3g110310.1	"Actin-binding, actinin-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127738.1.A1_at	B	B1A	POPTR_0003s07990	POPTR_0003s07990 (8:327)	scaffold_3:9466228-9466603(+) (10)	NA	NA	NA	AT2G35660.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os07g30960.1	"monooxygenase, putative, expressed"	Medtr5g013360.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127785.1.S1_at	B	B1S	POPTR_0007s03440	POPTR_0007s03440 (4:269)	scaffold_7:1970097-1970630(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g073480.1	"Uncharacterized 24.1 kDa protein in LEF4-P33 intergenic region, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127807.1.A1_at	B	B1S	POPTR_0003s18900	POPTR_0003s18900 (4:140)	scaffold_3:17813030-17813559(+) (11)	NA	A2WW87	Transcription factor GAMYB	AT5G06100.3	myb domain protein 33 	LOC_Os01g59660.2	"MYB family transcription factor, putative, expressed"	Medtr3g068960.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127881.1.A1_at	B	B1S	POPTR_0010s12130	POPTR_0010s12130 (8:453)	scaffold_10:12211282-12211822(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127900.2.A1_s_at	B	B1S	POPTR_0009s10010	POPTR_0009s10010 (8:75)	NA	NA	NA	NA	AT1G44542.1	Cyclase family protein 	LOC_Os09g02270.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128076.1.A1_at	B	B1S	POPTR_0015s10740	POPTR_0015s10740 (5:325)	NA	NA	Q5ZI43	Snurportin-1	AT4G24880.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g01130.1	"snurportin-1, putative, expressed"	Medtr3g117620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128101.1.S1_at	B	B1S	POPTR_0003s08190	POPTR_0003s08190 (3:211)	NA	NA	P75713	Uncharacterized protein ylbA	AT4G17050.1	ureidoglycine aminohydrolase 	LOC_Os07g31270.1	"cupin 2, conserved barrel domain protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128122.1.A1_at	B	B1S	POPTR_0004s13510	POPTR_0004s13510 (8:822)	NA	NA	Q795R8	Uncharacterized protein ytfP	AT5G39940.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os12g44160.2	"oxidoreductase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128159.1.S1_at	B	B1S	POPTR_0017s03520	POPTR_0017s03520 (7:132)	NA	NA	Q50EK6	Abietadienol/abietadienal oxidase	AT1G73340.1	Cytochrome P450 superfamily protein 	LOC_Os11g04710.1	"cytochrome P450, putative, expressed"	Medtr6g083890.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.128163.1.A1_a_at	B	B1S	POPTR_0002s16420	POPTR_0002s16420 (8:31)	NA	NA	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
PtpAffx.128163.1.A1_at	B	B1S	POPTR_0002s16420	POPTR_0002s16420 (8:1123)	NA	NA	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
PtpAffx.128174.1.A1_at	B	B1S	POPTR_0009s12350	POPTR_0009s12350 (8:286)	NA	NA	A4IHD2	Helicase ARIP4	AT2G16390.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os07g25390.1	"DRD1, putative, expressed"	Medtr7g027270.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.128225.2.A1_at	B	B1S	POPTR_0009s09790	POPTR_0009s09790 (6:339)	scaffold_9:8570163-8570568(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128453.1.S1_at	B	B1S	POPTR_0010s25370	POPTR_0010s25370 (6:260)	scaffold_10:21078591-21080538(-) (11)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20780.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.128478.1.S1_at	B	B1S	POPTR_0015s09830	POPTR_0015s09830 (5:521)	NA	NA	Q9M0G7	Leucine-rich repeat receptor-like protein kinase PXL2	AT2G31880.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g18000.1	"protein kinase domain containing protein, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.128588.1.S1_at	B	B2S	POPTR_0003s16400	POPTR_0003s16400 (5:460)//POPTR_0003s16410 (5:451)	NA	NA	Q9LYV6	GEM-like protein 5	AT5G13200.1	GRAM domain family protein 	LOC_Os12g29400.1	"GRAM domain containing protein, expressed"	Medtr7g096590.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12865.1.A1_at	B	B1S	POPTR_0010s23570	POPTR_0010s23570 (0:2330)	NA	NA	Q93Z04	Probable pectate lyase 13	AT5G04310.1	Pectin lyase-like superfamily protein 	LOC_Os10g31910.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128691.1.S1_at	B	B1S	POPTR_0006s01320	POPTR_0006s01320 (0:200)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129.1.A1_at	B	B1S	POPTR_0010s23890	POPTR_0010s23890 (8:659)	NA	NA	Q2N2K1	"Probable phytol kinase 1, chloroplastic"	AT5G04490.1	vitamin E pathway gene 5 	LOC_Os04g57500.1	"phosphatidate cytidylyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129036.1.S1_at	B	B1S	POPTR_0010s21570	POPTR_0010s21570 (7:813)	NA	NA	Q9SFZ3	Transcription factor bHLH110	AT1G27660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g28890.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.129173.1.S1_at	B	B1S	POPTR_0003s10030	POPTR_0003s10030 (8:892)	NA	NA	NA	NA	AT5G40600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g032500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129215.1.S1_at	B	B1S	POPTR_0004s01710	POPTR_0004s01710 (8:488)	NA	NA	P62283	Abnormal spindle-like microcephaly-associated protein homolog	AT4G21820.1	binding;calmodulin binding 	LOC_Os07g33370.1	"IQ calmodulin-binding motif family protein, expressed"	Medtr8g146600.1	IQ calmodulin-binding region; Calponin-like actin-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129256.1.S1_at	B	B1S	POPTR_0004s17540	POPTR_0004s17540 (6:495)	NA	NA	Q9LT23	Transcription factor bHLH121	AT3G19860.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g23823.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g112550.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.129452.1.A1_at	B	B1S	POPTR_0001s37000	POPTR_0001s37000 (3:298)	NA	NA	Q6P819	Cell differentiation protein RCD1 homolog	AT3G20800.1	"Cell differentiation, Rcd1-like protein "	LOC_Os07g37790.1	expressed protein	Medtr4g155270.1	"Cell differentiation proteins, Rcd1-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129457.1.A1_at	B	B4S	POPTR_0003s02030	POPTR_0027s00200 (0:523)//POPTR_0027s00220 (0:494)//POPTR_0027s00300 (0:494)//POPTR_0003s02030 (0:492)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT2G25470.1	receptor like protein 21 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.129531.1.A1_at	B	B1S	POPTR_0014s07120	POPTR_0014s07120 (0:142)	NA	NA	Q96287	Shaggy-related protein kinase theta	AT4G00720.1	shaggy-like protein kinase 32 	LOC_Os10g37740.1	"CGMC_GSK.9 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g083630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.129575.1.A1_at	B	B1S	POPTR_0006s23850	POPTR_0006s23850 (3:270)	NA	NA	NA	NA	AT5G21430.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g31460.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g139340.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.129586.1.S1_at	B	B1S	POPTR_0005s10300	POPTR_0005s10300 (6:621)	NA	NA	P46277	G2/mitotic-specific cyclin-1	AT2G17620.1	Cyclin B2;1 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.129603.1.S1_at	B	B1S	POPTR_0006s06270	POPTR_0006s06270 (3:971)	scaffold_6:4456625-4457847(-) (9)	NA	Q5DTI8	Extended synaptotagmin-3	AT1G05500.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os04g55220.1	"C2 domain containing protein, expressed"	Medtr8g121700.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129637.1.S1_at	B	B1S	POPTR_0010s05500	POPTR_0010s05500 (5:219)	NA	NA	A6TM73	Anthranilate phosphoribosyltransferase	AT1G70570.1	"anthranilate phosphoribosyltransferase, putative "	LOC_Os02g03850.1	"glycosyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129642.1.S1_at	B	B1S	POPTR_0008s04890	POPTR_0008s04890 (2:1291)	scaffold_8:2824897-2832422(-) (9)	NA	Q15393	Splicing factor 3B subunit 3	AT3G55200.1	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 	LOC_Os02g04480.1	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr8g121570.1	"CPSF A subunit, C-terminal; WD40-like "	NA	GO:0003676|nucleic acid binding	GO:0005634|nucleus
PtpAffx.129673.1.S1_at	B	B1S	POPTR_0003s08910	POPTR_0003s08910 (8:189)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129717.1.S1_at	B	B1S	POPTR_0001s08740	POPTR_0001s08740 (0:422)	NA	NA	Q9CAN9	Ethylene-responsive transcription factor ERF026	AT5G52020.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g73770.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr1g129460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.129732.1.S1_at	B	B1S	POPTR_0005s14560	POPTR_0005s14560 (0:152)	NA	NA	NA	NA	AT1G27700.1	Syntaxin/t-SNARE family protein 	LOC_Os05g37150.2	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr1g023580.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.129769.1.S1_at	B	B1S	POPTR_0015s00380	POPTR_0015s00380 (7:442)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1298.1.A1_at	B	B1S	POPTR_0005s26900	POPTR_0005s26900 (1:474)	NA	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.1302.3.A1_at	B	B1A	POPTR_0014s10450	POPTR_0014s10450 (0:230)	scaffold_14:7800554-7806318(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130249.1.S1_at	B	B1S	POPTR_0002s20610	POPTR_0002s20610 (7:477)	NA	NA	NA	NA	AT4G02425.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g21410.1	expressed protein	Medtr1g108420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130275.1.S1_at	B	B1S	POPTR_0015s09610	POPTR_0015s09610 (4:517)	NA	NA	Q65X23	Probable serine/threonine-protein kinase WNK2	AT3G48260.1	with no lysine (K) kinase 3 	LOC_Os05g01780.1	"STE_PAK_Ste20++TranslationKinase_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g115110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.130290.1.S1_at	B	B1S	POPTR_0018s11760	POPTR_0018s11760 (8:533)	NA	NA	Q00IB6	RNA polymerase II C-terminal domain phosphatase-like 4	AT5G58003.1	C-terminal domain phosphatase-like 4 	LOC_Os05g32430.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g055870.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.130373.1.S1_at	B	B1S	POPTR_0004s16300	POPTR_0004s16300 (0:397)	NA	NA	NA	NA	AT2G18360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g44960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g093180.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130385.1.S1_at	B	B1S	POPTR_0009s09170	POPTR_0009s09170 (8:785)	scaffold_9:8194329-8195044(+) (10)	NA	NA	NA	AT3G19650.1	cyclin-related 	LOC_Os03g10590.1	"splicing factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130523.1.S1_at	B	B1S	POPTR_0006s11040	POPTR_0006s11040 (6:282)	NA	NA	Q9LZV3	"Mannan endo-1,4-beta-mannosidase 6"	AT5G01930.1	Glycosyl hydrolase superfamily protein 	LOC_Os05g25480.1	"OsMan06 - Endo-Beta-Mannanase, expressed"	Medtr8g005200.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130569.1.S1_at	B	B1S	POPTR_0010s18120	POPTR_0010s18120 (6:1381)	NA	NA	Q9SAK4	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.130635.1.S1_s_at	B	B1S	POPTR_0019s08060	POPTR_0019s08060 (5:161)	NA	NA	Q6ZIB9	UPF0016 protein 4	AT5G36290.2	Uncharacterized protein family (UPF0016) 	LOC_Os08g41670.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr7g089540.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
PtpAffx.13068.1.S1_at	B	B2S	POPTR_0012s10360	POPTR_0012s10370 (0:2172)//POPTR_0012s10360 (4:603)	scaffold_12:11161522-11162448(+) (10)	NA	Q7Q732	Dehydrogenase/reductase SDR family protein 7-like	AT5G50690.1	hydroxysteroid dehydrogenase 7 	LOC_Os12g27830.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.130724.1.S1_s_at	B	B2S	POPTR_0003s01330	POPTR_0003s01330 (7:888)//POPTR_0003s01320 (1:43)	NA	NA	Q0WVV0	"Pentatricopeptide repeat-containing protein At1g10910, chloroplastic"	AT1G10910.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g37870.4	"PPR repeat domain containing protein, putative, expressed"	Medtr2g007110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130762.1.S1_at	B	B1S	POPTR_0014s03890	POPTR_0014s03890 (0:2203)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130848.1.A1_at	B	B1S	POPTR_0018s09900	POPTR_0018s09900 (7:564)	NA	NA	Q6PQQ3	AP2-like ethylene-responsive transcription factor AIL5	AT5G57390.1	AINTEGUMENTA-like 5 	LOC_Os04g55970.2	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g129150.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.13092.2.A1_at	B	B1S	POPTR_0015s06230	POPTR_0015s06230 (8:186)	NA	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT5G23060.1	calcium sensing receptor 	LOC_Os02g49680.1	"arsenate reductase, putative, expressed"	Medtr8g115590.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130966.1.S1_at	B	B1S	POPTR_0001s23210	POPTR_0001s23210 (6:750)	NA	NA	P44747	Tyrosine-specific transport protein 2	AT5G19500.1	Tryptophan/tyrosine permease 	LOC_Os07g46780.1	"tyrosine-specific transport protein, putative, expressed"	Medtr5g095820.1	Aromatic amino acid permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130976.1.S1_at	B	B1S	POPTR_0005s24790	POPTR_0005s24790 (6:334)	NA	NA	P04844	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	AT4G21150.3	ribophorin II (RPN2) family protein 	LOC_Os01g68324.2	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0071212|subsynaptic reticulum||GO:0008250|oligosaccharyltransferase complex
PtpAffx.131.2.S1_a_at	B	B1S	POPTR_0009s16490	POPTR_0009s16490 (3:45)	NA	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT4G00830.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g009690.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.131038.1.S1_at	B	B1S	POPTR_0004s19620	POPTR_0004s19620 (8:435)	NA	NA	O81117	Cytochrome P450 94A1	AT2G27690.1	"cytochrome P450, family 94, subfamily C, polypeptide 1 "	LOC_Os05g37250.1	"cytochrome P450, putative, expressed"	Medtr4g072990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.131057.1.A1_at	B	B1S	POPTR_0001s40140	POPTR_0001s40140 (0:109)	NA	NA	NA	NA	AT1G78815.1	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g092170.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131076.1.S1_at	B	B1S	POPTR_0012s01800	POPTR_0012s01800 (8:2972)	NA	NA	Q9LFT8	Cyclin-dependent kinase C-1	AT5G10270.1	cyclin-dependent kinase C;1 	LOC_Os01g72790.1	"cyclin-dependent kinase, putative, expressed"	Medtr5g008910.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.131102.2.S1_at	B	B1S	POPTR_0005s08380	POPTR_0005s08380 (8:469)	NA	NA	Q940M2	"Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial"	AT4G39660.1	alanine:glyoxylate aminotransferase 2 	LOC_Os03g07570.4	"aminotransferase, putative, expressed"	Medtr4g140630.1	"Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.131104.1.S1_at	B	B1S	POPTR_0002s12590	POPTR_0002s12590 (5:530)	NA	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT5G42940.1	RING/U-box superfamily protein 	LOC_Os04g55510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g024190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131148.1.S1_at	B	B2S	POPTR_0010s05750	POPTR_0010s05750 (6:230)//POPTR_0010s05740 (1:51)	NA	NA	NA	NA	AT1G67840.1	chloroplast sensor kinase 	LOC_Os12g19530.2	"ATP-binding region, ATPase-like domain-containing protein, putative, expressed"	NA	NA	NA	GO:0005524|ATP binding	NA
PtpAffx.131193.1.S1_at	B	B1S	POPTR_0008s18380	POPTR_0008s18380 (7:504)	NA	NA	P54583	Endoglucanase E1	AT1G13130.1	Cellulase (glycosyl hydrolase family 5) protein 	LOC_Os04g40510.2	"glycosyl hydrolase family 5 protein, putative, expressed"	Medtr3g102620.1	Ricin B-related lectin 	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.131309.1.S1_at	B	B1S	POPTR_0005s06410	POPTR_0005s06410 (7:507)	NA	NA	Q9FDW1	Transcription factor MYB44	AT4G33450.1	myb domain protein 69 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr5g044760.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131317.1.S1_at	B	B1S	POPTR_0012s07540	POPTR_0012s07540 (8:1351)	NA	NA	Q6P2B1	Transportin-3	AT5G62600.1	ARM repeat superfamily protein 	LOC_Os10g33770.1	importin-beta N-terminal domain containing protein	AC233677_6.1	Exportin-1/Importin-beta-like AC233677.2 40883-35967 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.131417.1.A1_at	B	B1S	POPTR_0012s06690	POPTR_0012s06690 (8:2067)	NA	NA	NA	NA	AT5G60840.1	unknown protein; Has 361 Blast hits to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa - 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes - 62 (source: NCBI BLink). 	NA	NA	Medtr2g074230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131515.1.S1_at	B	B1S	POPTR_0009s08160	POPTR_0009s08160 (8:1017)	NA	NA	Q944L7	Uncharacterized protein At1g18480	AT1G07010.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os10g25430.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr5g081100.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.131657.1.S1_at	B	B1S	POPTR_0009s02240	POPTR_0009s02240 (8:408)	NA	NA	NA	NA	AT5G22070.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g44580.3	"DNA binding protein, putative, expressed"	Medtr2g104790.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.131730.1.S1_at	B	B1S	POPTR_0014s07170	POPTR_0014s07170 (4:1774)	NA	NA	NA	NA	AT4G00752.1	UBX domain-containing protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131744.1.S1_at	B	B1S	POPTR_0001s17040	POPTR_0001s17040 (7:709)	NA	NA	Q9SKI2	Vacuolar protein sorting-associated protein 2 homolog 1	AT2G06530.1	SNF7 family protein 	LOC_Os07g13270.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	GO:0015031|protein transport	NA	NA
PtpAffx.131745.1.S1_at	B	B1S	POPTR_0016s03490	POPTR_0016s03490 (6:1472)	NA	NA	Q9UNI6	Dual specificity protein phosphatase 12	AT4G18593.1	dual specificity protein phosphatase-related 	LOC_Os12g03990.1	"dual specificity protein phosphatase, putative, expressed"	Medtr7g106530.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.131878.1.S1_at	B	B1S	POPTR_0005s28170	POPTR_0005s28170 (6:130)	NA	NA	Q8GYX8	Chaperone protein dnaJ 10	AT1G21080.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os08g41110.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.131943.1.S1_at	B	B1S	POPTR_0012s14520	POPTR_0012s14520 (3:255)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132060.1.A1_at	B	B1S	POPTR_0002s24890	POPTR_0002s24890 (1:977)	NA	NA	P43294	Serine/threonine-protein kinase MHK	AT4G13020.4	Protein kinase superfamily protein 	LOC_Os03g63020.1	"protein kinase domain containing protein, expressed"	Medtr8g012830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132063.1.A1_at	B	B1S	POPTR_0017s12270	POPTR_0017s12270 (7:424)	NA	NA	O35587	Transmembrane protein Tmp21	AT1G26690.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.132081.1.A1_at	B	B1S	POPTR_0019s10170	POPTR_0019s10170 (0:170)	NA	NA	Q8BVQ5	Protein phosphatase methylesterase 1	AT4G10050.1	esterase/lipase/thioesterase family protein 	LOC_Os04g36620.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr5g008510.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132090.1.A1_s_at	B	B1S	POPTR_0005s07990	POPTR_0005s07990 (2:1994)	scaffold_5:5494832-5497327(-) (11)	NA	Q6MEW4	"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase"	AT1G22170.1	Phosphoglycerate mutase family protein 	LOC_Os02g51590.1	"phosphoglycerate mutase, putative, expressed"	CU651566_7.1	Phosphoglycerate mutase 1 CU651566.9 30664-34534 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132095.1.A1_at	B	B1S	POPTR_0008s06080	POPTR_0008s06080 (5:135)	NA	NA	Q8W115	PRA1 family protein A3	AT3G11402.2	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os05g38160.1	"prenylated rab acceptor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132098.1.A1_at	B	B1S	POPTR_0001s42720	POPTR_0001s42720 (8:361)	NA	NA	Q9SHI1	"Translation initiation factor IF-2, chloroplastic"	AT1G17220.1	"Translation initiation factor 2, small GTP-binding protein "	LOC_Os05g49970.2	"translation initiation factor IF-2, chloroplast precursor, putative, expressed"	Medtr2g077230.1	"Elongation factor Tu, domain 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0003743|translation initiation factor activity	GO:0005622|intracellular
PtpAffx.132099.1.A1_at	B	B1S	POPTR_0006s25090	POPTR_0006s25090 (5:132)	NA	NA	P26683	RNA polymerase sigma factor rpoD	AT3G53920.1	RNApolymerase sigma-subunit C 	LOC_Os05g51150.1	"RNA polymerase sigma factor, putative, expressed"	Medtr1g008400.1	"Sigma factor, ECF; Peptidase S1 and S6, chymotrypsin/Hap; Winged helix repressor DNA-binding; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.132118.1.A1_at	B	B1S	POPTR_0017s12650	POPTR_0017s12650 (7:169)	NA	NA	Q8GWT1	Probable galacturonosyltransferase 14	AT5G15470.1	galacturonosyltransferase 14 	LOC_Os12g38930.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g011880.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.13213.2.A1_s_at	B	B1S	POPTR_0004s16110	POPTR_0004s16110 (8:278)	NA	NA	P93398	Guanine nucleotide-binding protein subunit beta-2	AT4G34460.1	GTP binding protein beta 1 	LOC_Os03g46650.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g159480.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132140.1.A1_at	B	B1S	POPTR_0006s08300	POPTR_0006s08300 (0:101)	NA	NA	Q9SJN0	Protein ABSCISIC ACID-INSENSITIVE 5	AT2G36270.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g64000.1	"bZIP transcription factor, putative, expressed"	Medtr7g127260.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.132152.1.A1_at	B	B1S	POPTR_0011s01580	POPTR_0011s01580 (5:272)	NA	NA	Q2RQW1	50S ribosomal protein L4	AT2G20060.1	Ribosomal protein L4/L1 family 	LOC_Os11g37510.1	"ribosomal protein L4, putative, expressed"	Medtr3g136260.1	Ribosomal protein L4/L1e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.132156.1.S1_at	B	B1S	POPTR_0425s00200	POPTR_0425s00200 (6:86)	NA	NA	NA	NA	AT1G22140.1	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g26791.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132160.1.A1_at	B	B1S	POPTR_0004s05400	POPTR_0004s05400 (5:287)	scaffold_4:4155759-4156326(+) (10)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g46240.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.132168.1.S1_at	B	B1S	POPTR_0008s01910	POPTR_0008s01910 (8:132)	NA	NA	NA	NA	AT3G10630.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os09g12530.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr1g112250.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.132306.2.A1_a_at	B	B1S	POPTR_0008s10240	POPTR_0008s10240 (5:189)	NA	NA	Q9SEE5	Galactokinase	AT3G06580.1	Mevalonate/galactokinase family protein 	LOC_Os03g61710.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr8g136890.1	GHMP kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.132306.2.A1_at	B	B1S	POPTR_0008s10240	POPTR_0008s10240 (4:318)	NA	NA	Q9SEE5	Galactokinase	AT3G06580.1	Mevalonate/galactokinase family protein 	LOC_Os03g61710.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr8g136890.1	GHMP kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.132310.1.A1_at	B	B1S	POPTR_0016s02070	POPTR_0016s02070 (8:264)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G22250.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g44354.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g106600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132380.1.A1_at	B	B1S	POPTR_0018s12880	POPTR_0018s12880 (8:363)	scaffold_18:13384046-13384429(+) (9)	NA	NA	NA	AT3G24150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132394.1.A1_at	B	B1S	POPTR_0008s00310	POPTR_0008s00310 (4:214)	NA	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT5G08570.1	Pyruvate kinase family protein 	LOC_Os04g58110.1	"pyruvate kinase, putative, expressed"	Medtr4g115180.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.132574.1.S1_s_at	B	B1S	POPTR_0019s05010	POPTR_0019s05010 (8:1804)	NA	NA	Q5RC72	Casein kinase I isoform delta	AT3G03940.1	Protein kinase family protein 	LOC_Os01g56580.2	"CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g100510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132618.1.S1_at	B	B1S	POPTR_0009s14780	POPTR_0009s14780 (8:350)	scaffold_9:11515423-11515819(-) (10)	NA	O81117	Cytochrome P450 94A1	AT2G27690.1	"cytochrome P450, family 94, subfamily C, polypeptide 1 "	LOC_Os05g37250.1	"cytochrome P450, putative, expressed"	Medtr4g072990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.132644.1.S1_s_at	B	B1S	POPTR_0011s05120	POPTR_0011s05120 (8:200)	NA	NA	Q84JR3	"Pentatricopeptide repeat-containing protein At4g21705, mitochondrial"	AT4G21705.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132683.1.S1_at	B	B1S	POPTR_0008s17940	POPTR_0008s17940 (7:788)	NA	NA	P25858	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT3G04120.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
PtpAffx.132698.1.S1_at	B	B1S	POPTR_0001s05720	POPTR_0001s05720 (8:786)	scaffold_1:4396585-4397387(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.132718.1.S1_at	B	B1S	POPTR_0012s03340	POPTR_0012s03340 (7:329)	NA	NA	Q14684	Ribosomal RNA processing protein 1 homolog B	AT5G20600.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). "	LOC_Os04g56350.1	"nucleolar protein,Nop52 containing protein, expressed"	Medtr8g147770.1	"Nucleolar, Nop52 "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	"GO:0030688|""preribosome, small subunit precursor"""
PtpAffx.132816.1.A1_at	B	B1A	POPTR_0014s16520	POPTR_0014s16520 (8:481)	NA	NA	O19071	"Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase"	AT2G05320.1	"beta-1,2-N-acetylglucosaminyltransferase II "	LOC_Os02g55470.1	"alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, putative"	NA	NA	GO:0009312|oligosaccharide biosynthetic process	"GO:0008455|""alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity"""	GO:0016021|integral to membrane||GO:0005795|Golgi stack
PtpAffx.132861.1.S1_at	B	B1S	POPTR_0010s06180	POPTR_0010s06180 (8:1222)	NA	NA	Q9FYL3	"ALBINO3-like protein 1, chloroplastic"	AT1G24490.1	OxaA/YidC-like membrane insertion protein 	LOC_Os03g62750.1	"inner membrane protein, putative, expressed"	Medtr3g102810.1	60 kDa inner membrane insertion protein 	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.132873.1.S1_at	B	B2S	POPTR_0006s10880	POPTR_0006s10880 (7:517)//POPTR_0016s14350 (1:509)	NA	NA	Q6Z3U3	B3 domain-containing protein Os07g0679700	AT4G32010.1	HSI2-like 1 	LOC_Os07g48200.1	"B3 DNA binding domain containing protein, putative, expressed"	Medtr4g036540.1	"Transcriptional factor B3; Zinc finger, CW-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.132894.1.S1_at	B	B1S	POPTR_0002s16960	POPTR_0002s16960 (8:1871)	NA	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132968.1.S1_at	B	B1S	POPTR_0002s03180	POPTR_0002s03180 (7:118)	NA	NA	P82859	Agglutinin	AT1G19715.3	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.3	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132982.1.S1_at	B	B1S	POPTR_0016s06650	POPTR_0016s06650 (8:528)	NA	NA	NA	NA	AT3G52360.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35850.1); Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133091.1.S1_at	B	B1S	POPTR_0012s10660	POPTR_0012s10660 (2:493)	scaffold_12:11365825-11365933(-) (10)	NA	NA	NA	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.133095.1.S1_at	B	B1S	POPTR_0002s01830	POPTR_0002s01830 (6:858)	NA	NA	Q3ECD0	"RNA pseudourine synthase 2, chloroplastic"	AT1G76050.2	Pseudouridine synthase family protein 	LOC_Os06g50360.1	"pseudouridine synthase family protein, putative, expressed"	Medtr3g157130.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.133182.1.S1_at	B	B1S	POPTR_0002s21280	POPTR_0002s21280 (7:515)	NA	NA	A8MRC7	"Probable beta-1,3-galactosyltransferase 2"	AT1G05170.1	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.133217.1.S1_at	B	B1S	POPTR_0005s03890	POPTR_0005s03890 (7:208)	NA	NA	Q9MA98	DNA excision repair protein ERCC-1	AT3G05210.1	"nucleotide repair protein, putative "	LOC_Os10g37490.1	"DNA excision repair protein ERCC-1, putative, expressed"	Medtr1g099210.1	DNA repair protein rad10; RuvA domain 2-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004519|endonuclease activity||GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.133259.1.S1_at	B	B1S	POPTR_0001s08840	POPTR_0001s08840 (8:844)	NA	NA	Q6GQ69	FAS-associated factor 2-B	AT4G11740.1	Ubiquitin-like superfamily protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133295.1.A1_at	B	B1S	POPTR_0011s01570	POPTR_0011s01570 (0:2095)	NA	NA	NA	NA	AT4G22140.2	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os09g21770.1	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.133389.2.A1_at	B	B1S	POPTR_0007s02140	POPTR_0007s02140 (0:81)	NA	NA	Q8VZR6	Probable inositol transporter 1	AT2G43330.1	inositol transporter 1 	LOC_Os04g41460.1	"transporter family protein, putative, expressed"	Medtr7g005590.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.133437.1.A1_at	B	B1S	POPTR_0002s05870	POPTR_0002s05870 (0:300)	NA	NA	Q9ATF5	60S ribosomal protein L18a	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.13344.3.S1_s_at	B	B1S	POPTR_0005s20240	POPTR_0005s20240 (7:60)	scaffold_5:19282761-19282901(-) (11)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g66120.1	"No apical meristem protein, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.133537.1.A1_at	B	B1S	POPTR_0013s13960	POPTR_0013s13960 (0:12)	scaffold_13:14267787-14268053(-) (11)	NA	B9I666	"Lipoyl synthase 1, chloroplastic"	AT5G08415.1	Radical SAM superfamily protein 	LOC_Os05g43576.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.133565.1.A1_at	B	B1S	POPTR_0005s24120	POPTR_0005s24120 (0:292)	NA	NA	P31674	40S ribosomal protein S15	AT5G09500.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.133639.1.A1_at	B	B1S	POPTR_0008s00470	POPTR_0008s00470 (8:156)	scaffold_8:188660-188847(-) (11)	NA	P29518	"Protein brittle-1, chloroplastic/amyloplastic"	AT3G20240.1	Mitochondrial substrate carrier family protein 	LOC_Os08g40850.1	"mitochondrial carrier protein, putative, expressed"	Medtr1g013520.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133654.1.A1_at	B	B1S	POPTR_0007s14580	POPTR_0007s14580 (3:169)	scaffold_7:14321056-14326501(-) (10)	NA	Q9CR14	E3 ubiquitin-protein ligase FANCL	AT5G65740.2	zinc ion binding 	LOC_Os03g51680.1	"fanconi anemia L, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133674.1.A1_at	B	B1S	POPTR_0001s07900	POPTR_0001s07900 (8:435)	NA	NA	Q8MJJ1	Maspardin	AT4G12230.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g08840.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g106940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133709.1.A1_at	B	B1S	POPTR_0017s00510	POPTR_0017s00510 (1:84)	NA	NA	Q945S8	Histone-lysine N-methyltransferase ASHH3	AT2G44150.1	histone-lysine N-methyltransferase ASHH3 	LOC_Os09g13740.2	"SET domain containing protein, expressed"	Medtr6g070840.1	Nuclear protein SET; SET-related region; AWS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133732.1.A1_at	B	B1S	POPTR_0002s08160	POPTR_0002s08160 (8:535)	NA	NA	NA	NA	AT1G77460.2	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein 	LOC_Os11g08090.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133733.1.A1_at	B	B1S	POPTR_0008s18260	POPTR_0008s18260 (0:169)	NA	NA	O04450	T-complex protein 1 subunit epsilon	AT1G24510.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g36700.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.133781.1.A1_at	B	B1S	POPTR_0010s14270	POPTR_0010s14270 (1:34)	scaffold_10:13942535-13942819(+) (11)	NA	Q9SX33	Putative phospholipid-transporting ATPase 9	AT1G68710.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g29380.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr8g115700.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.133782.1.A1_at	B	B1S	POPTR_0006s02970	POPTR_0006s02970 (8:177)	NA	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity	NA
PtpAffx.133809.1.A1_at	B	B1S	POPTR_0001s21690	POPTR_0001s21690 (3:148)	NA	NA	Q9LU85	"Probable plastid-lipid-associated protein 4, chloroplastic"	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os03g49720.1	"PAP fibrillin family domain containing protein, expressed"	Medtr2g007410.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.133828.1.A1_at	B	B1S	POPTR_0016s05200	POPTR_0016s05200 (1:242)	scaffold_16:3162700-3163139(+) (11)	NA	NA	NA	AT2G42320.2	nucleolar protein gar2-related 	LOC_Os09g31230.2	expressed protein	Medtr7g111110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133855.1.A1_at	B	B1S	POPTR_0009s03180	POPTR_0009s03180 (8:771)	NA	NA	Q8VYR2	Nudix hydrolase 9	AT3G46200.1	nudix hydrolase homolog 9 	LOC_Os05g02640.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g079320.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.133891.2.A1_at	B	B1S	POPTR_0006s27640	POPTR_0006s27640 (6:472)	NA	NA	Q0V7T5	Probable receptor-like protein kinase At1g80640	AT4G32000.2	Protein kinase superfamily protein 	LOC_Os05g25540.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g012230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.133924.1.A1_at	B	B1S	POPTR_0008s16910	POPTR_0008s16910 (6:297)	scaffold_8:11362816-11363269(+) (10)	NA	NA	NA	AT4G14310.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g56520.1	expressed protein	Medtr2g092990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133944.1.A1_at	B	B1S	POPTR_0014s15320	POPTR_0014s15320 (8:412)	scaffold_14:11396184-11396681(-) (11)	NA	Q9C519	WRKY transcription factor 6	AT1G62300.1	WRKY family transcription factor 	LOC_Os01g14440.1	"OsWRKY1v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr2g104410.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.133958.1.A1_at	B	B1S	POPTR_0010s19580	POPTR_0010s19580 (0:362)	NA	NA	Q9GZU7	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133960.1.A1_at	B	B1S	POPTR_0022s00850	POPTR_0022s00850 (8:179)	NA	NA	Q68CQ4	Digestive organ expansion factor homolog	AT1G17690.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). "	LOC_Os05g22920.1	"digestive organ expansion factor, putative, expressed"	Medtr2g013650.1	Protein of unknown function DUF1253 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13406.1.S1_at	B	B1S	POPTR_0006s14620	POPTR_0006s14620 (5:201)	NA	NA	Q6NY74	Replication protein A 70 kDa DNA-binding subunit	AT2G06510.2	replication protein A 1A 	LOC_Os02g53680.1	"RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr3g061820.1	"Replication factor-A protein 1, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134093.1.A1_at	B	B1S	POPTR_0016s05990	POPTR_0016s05990 (4:191)	scaffold_16:3923201-3923731(+) (10)	NA	O73787	Gamma-tubulin complex component 3 homolog	AT5G06680.1	spindle pole body component 98 	LOC_Os09g27370.2	"Spc97 / Spc98 family protein, putative, expressed"	Medtr7g112250.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
PtpAffx.134127.1.A1_at	B	B1S	POPTR_0001s06530	POPTR_0001s06530 (3:380)	NA	NA	Q9LK88	NADPH:quinone oxidoreductase	AT3G27890.1	NADPH:quinone oxidoreductase 	LOC_Os01g72430.1	"NADPH quinone oxidoreductase, putative, expressed"	Medtr8g042840.1	NADPH-dependent FMN reductase 	NA	GO:0050662|coenzyme binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.13414.1.S1_at	B	B2S	POPTR_0018s10120	POPTR_0018s10120 (6:689)//POPTR_0018s10130 (1:229)	scaffold_18:11109840-11112692(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134165.1.A1_at	B	B1S	POPTR_0001s32640	POPTR_0001s32640 (6:340)	NA	NA	NA	NA	AT3G23900.3	RNA recognition motif (RRM)-containing protein 	LOC_Os01g01150.3	"RNA recognition motif, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.134171.1.A1_at	B	B1S	POPTR_0006s21600	POPTR_0006s21600 (2:1330)	NA	NA	Q54SW1	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179	AT3G11780.1	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134178.1.A1_at	B	B1S	POPTR_0001s09370	POPTR_0001s09370 (7:309)	scaffold_1:7151563-7152130(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134185.1.A1_at	B	B1S	POPTR_0004s20070	POPTR_0004s20070 (1:92)	NA	NA	NA	NA	AT4G25315.2	Expressed protein 	LOC_Os09g34120.1	expressed protein	Medtr3g005790.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134187.2.S1_a_at	B	B2S	POPTR_0014s15380	POPTR_0014s15380 (8:641)//POPTR_0014s15370 (0:278)	scaffold_14:11450805-11457447(+) (11)	NA	NA	NA	AT1G05070.1	Protein of unknown function (DUF1068) 	LOC_Os03g56610.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134196.1.A1_at	B	B1S	POPTR_0004s14800	POPTR_0004s14800 (0:120)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g129860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134225.1.A1_at	B	B1S	POPTR_0018s11880	POPTR_0018s11880 (4:346)	NA	NA	NA	NA	AT4G30993.2	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os06g08470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134269.1.A1_at	B	B1S	POPTR_0007s10330	POPTR_0007s10330 (8:407)	scaffold_7:10175308-10175827(-) (11)	NA	Q9SNV9	Metal transporter Nramp3	AT2G23150.1	natural resistance-associated macrophage protein 3 	LOC_Os12g39180.1	"natural resistance-associated macrophage protein, putative, expressed"	Medtr5g016260.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.134292.1.A1_at	B	B1S	POPTR_0015s09510	POPTR_0015s09510 (8:439)	scaffold_15:10724603-10725250(+) (11)	NA	Q9FGS8	C2 and GRAM domain-containing protein At5g50170	AT5G50170.1	C2 calcium/lipid-binding and GRAM domain containing protein 	LOC_Os06g19400.1	"GRAM and C2 domains containing protein, putative, expressed"	Medtr3g114790.1	C2; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134311.1.A1_at	B	B2S	POPTR_0014s00360	POPTR_0014s00360 (4:429)//POPTR_0019s10800 (2:380)	NA	NA	P0C8Y0	Camelliol C synthase	AT1G78955.1	camelliol C synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.134381.1.A1_at	B	B1S	POPTR_0006s12740	POPTR_0006s12740 (2:475)	NA	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.134394.1.A1_at	B	B1S	POPTR_0010s07830	POPTR_0010s07830 (8:661)	scaffold_10:8801104-8801947(-) (11)	NA	P31049	Uncharacterized methyltransferase in lpd-3 5'region	AT3G23510.1	Cyclopropane-fatty-acyl-phospholipid synthase 	LOC_Os07g29220.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr1g064910.1	Cyclopropane-fatty-acyl-phospholipid synthase 	GO:0008610|lipid biosynthetic process	GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
PtpAffx.134412.1.A1_at	B	B1S	POPTR_0011s12040	POPTR_0011s12040 (0:182)	NA	NA	NA	NA	AT4G27500.1	proton pump interactor 1 	LOC_Os08g30060.2	"proton pump interactor, putative, expressed"	Medtr2g100530.1	"proton pump interactor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134416.1.A1_at	B	B1S	POPTR_0002s11970	POPTR_0002s11970 (2:292)	NA	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT3G03990.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g10620.3	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g023380.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134514.1.A1_at	B	B1S	POPTR_0015s04920	POPTR_0015s04920 (8:411)	NA	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os03g50450.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr4g154640.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.134515.1.A1_at	B	B1S	POPTR_0016s05020	POPTR_0016s05020 (4:211)	NA	NA	Q8C1A9	Uncharacterized protein C4orf29 homolog	AT3G12150.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os02g10160.1	"AGAP003371-PA, putative, expressed"	Medtr7g111340.1	"Uncharacterized protein C4orf29 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134518.1.A1_at	B	B1S	POPTR_0002s02610	POPTR_0002s02610 (5:429)	NA	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT1G75590.1	SAUR-like auxin-responsive protein family  	LOC_Os04g56680.1	"OsSAUR22 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g097600.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134529.1.A1_at	B	B1S	POPTR_0005s23090	POPTR_0005s23090 (6:161)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134539.1.A1_at	B	B1A	POPTR_0005s11050	POPTR_0005s11050 (8:479)	NA	NA	Q9LX20	Aspartic proteinase-like protein 1	AT2G17760.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g15790.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g089280.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134562.2.A1_at	B	B1S	POPTR_0018s07360	POPTR_0018s07360 (5:219)	NA	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G43220.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.1	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134584.1.A1_at	B	B1S	POPTR_0014s13480	POPTR_0014s13480 (7:308)	NA	NA	NA	NA	AT2G48160.1	Tudor/PWWP/MBT domain-containing protein 	LOC_Os03g24339.1	"PWWP domain containing protein, expressed"	Medtr1g086720.1	PWWP; Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134598.1.A1_at	B	B1S	POPTR_0002s16350	POPTR_0002s16350 (6:277)	NA	NA	Q69ZJ7	Protein RIC1 homolog	AT5G28350.1	"Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor "	LOC_Os02g54500.1	"WD40-like, putative, expressed"	Medtr7g087880.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13460.1.S1_at	B	B1S	POPTR_0005s12870	POPTR_0005s12870 (7:388)	NA	NA	Q56XQ0	UPF0496 protein At2g18630	AT2G18630.1	Protein of unknown function (DUF677) 	LOC_Os03g10240.2	"DUF677 domain containing protein, putative, expressed"	Medtr5g019340.1	Protein of unknown function DUF677 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134631.1.A1_at	B	B1S	POPTR_0001s29360	POPTR_0001s29360 (7:292)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134833.1.S1_at	B	B1S	POPTR_0012s03970	POPTR_0012s03970 (0:2222)	NA	NA	NA	NA	AT1G48440.1	B-cell receptor-associated 31-like 	LOC_Os03g13750.1	"erwinia induced protein 2, putative, expressed"	Medtr6g080520.1	"T1N15.5, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134857.1.S1_at	B	B1S	POPTR_0003s20690	POPTR_0003s20690 (8:3178)	NA	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134976.2.S1_at	B	B1S	POPTR_0017s06920	POPTR_0017s06920 (2:225)	NA	NA	Q7XAS7	"Isoprene synthase, chloroplastic"	AT3G25810.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.13499.1.S1_at	B	B1S	POPTR_0002s25710	POPTR_0002s25710 (0:139)	NA	NA	Q7GB25	ABC transporter C family member 5	AT1G04120.1	multidrug resistance-associated protein 5 	LOC_Os03g04920.1	"multidrug resistance-associated protein, putative, expressed"	Medtr7g117090.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.135026.1.S1_at	B	B1A	POPTR_0002s18910	POPTR_0002s18910 (8:479)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135056.1.S1_at	B	B1S	POPTR_0006s00790	POPTR_0006s00790 (0:137)	NA	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g14870.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150810.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.135070.1.S1_at	B	B1S	POPTR_0014s14030	POPTR_0014s14030 (8:4404)	NA	NA	NA	NA	AT2G42750.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g53020.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g097870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.1352.5.S1_at	B	B1S	POPTR_0013s13100	POPTR_0013s13100 (6:492)	scaffold_13:13682164-13685980(+) (10)	NA	P22337	"Acyl-[acyl-carrier-protein] desaturase, chloroplastic"	AT2G43710.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os01g69080.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr5g024070.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0045300|acyl-[acyl-carrier-protein] desaturase activity	NA
PtpAffx.13520.1.S1_at	B	B1S	POPTR_0009s14980	POPTR_0009s14980 (0:117)	NA	NA	Q9ZUX7	tRNA dimethylallyltransferase 2	AT2G27760.1	tRNAisopentenyltransferase 2 	LOC_Os01g73760.1	"IPP transferase, putative, expressed"	Medtr4g073150.1	Isopentenyl transferase-like 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.13523.1.S1_at	B	B1S	POPTR_0016s03520	POPTR_0016s03520 (7:537)	NA	NA	NA	NA	AT3G56720.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. 	LOC_Os10g34660.1	expressed protein	Medtr1g068730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135487.1.S1_at	B	B2S	POPTR_0009s14240	POPTR_0009s14240 (7:479)//POPTR_0009s14250 (7:408)	scaffold_9:11208245-11213364(+) (9)	NA	P92997	Germin-like protein subfamily 1 member 13	AT5G39190.1	germin-like protein 2 	LOC_Os08g08960.1	"Cupin domain containing protein, expressed"	Medtr1g093090.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.13551.1.S1_at	B	B1S	POPTR_0001s29250	POPTR_0001s29250 (0:14)	scaffold_1:27984746-27984860(-) (11)	NA	NA	NA	AT5G64430.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os02g56480.1	"PB1 domain containing protein, expressed"	Medtr2g010210.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135522.1.S1_at	B	B1S	POPTR_0011s02570	POPTR_0011s02570 (6:283)	NA	NA	NA	NA	AT1G17210.1	IAP-like protein 1 	LOC_Os03g57160.1	"zinc ion binding protein, putative, expressed"	Medtr2g077240.1	"Zinc finger, C3HC-like "	NA	GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.135544.1.S1_at	B	B1S	POPTR_0019s01130	POPTR_0019s01130 (7:828)	NA	NA	Q9ZWQ9	Flavonol synthase/flavanone 3-hydroxylase	AT5G08640.2	flavonol synthase 1 	LOC_Os02g52840.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr5g065120.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.135632.1.S1_at	B	B1S	POPTR_0015s03060	POPTR_0015s03060 (8:1611)	NA	NA	Q557M8	General transcription factor IIE subunit 1	AT1G03280.1	"Transcription factor TFIIE, alpha subunit "	LOC_Os08g25460.1	"transcription initiation factor, putative, expressed"	Medtr8g092930.1	"Transcription factor TFIIE, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	NA
PtpAffx.135649.1.S1_at	B	B1S	POPTR_0019s07530	POPTR_0019s07530 (0:161)	NA	NA	Q7X996	CBL-interacting protein kinase 2	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.135664.1.S1_at	B	B1S	POPTR_0005s04860	POPTR_0005s04860 (8:479)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135698.1.S1_at	B	B1S	POPTR_0011s12590	POPTR_0011s12590 (5:317)	NA	NA	Q9LID0	Lysine-specific histone demethylase 1 homolog 2	AT3G13682.1	LSD1-like2 	LOC_Os08g04780.1	"amine oxidase, putative, expressed"	Medtr3g076130.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.135709.1.S1_at	B	B1S	POPTR_0010s08390	POPTR_0010s08390 (5:412)	NA	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.135771.1.S1_at	B	B2S	POPTR_0003s10910	POPTR_0001s00590 (4:1412)//POPTR_0003s10910 (8:1371)	NA	NA	O64769	Potassium transporter 11	AT2G35060.1	K+ uptake permease 11 	LOC_Os04g52390.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.135825.1.S1_at	B	B1S	POPTR_0001s24150	POPTR_0001s24150 (6:2619)	NA	NA	Q55DM5	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	AT5G59740.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os05g02490.1	"transporter family protein, putative, expressed"	Medtr2g114330.1	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135893.1.A1_at	B	B1S	POPTR_0007s15090	POPTR_0007s15090 (7:530)	NA	NA	Q9C5X9	Histone acetyltransferase HAC1	AT1G79000.1	histone acetyltransferase of the CBP family 1 	LOC_Os02g04490.1	"histone acetyltransferase HAC1, putative, expressed"	Medtr4g163230.1	"Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.135916.1.A1_at	B	B2S	POPTR_0018s01810	POPTR_0018s01810 (4:297)//POPTR_0006s27140 (0:155)	NA	NA	NA	NA	AT4G35530.1	phosphatidylinositolglycan-related 	LOC_Os05g07260.2	"phosphatidylinositolglycan-related, putative, expressed"	Medtr7g005890.1	phosphatidylinositolglycan-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135937.1.A1_at	B	B1S	POPTR_0005s24560	POPTR_0005s24560 (3:196)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135999.1.A1_at	B	B1S	POPTR_0003s13750	POPTR_0003s13750 (6:1039)	NA	NA	NA	NA	AT3G61670.1	Protein of unknown function (DUF3133) 	LOC_Os02g15820.1	"extra-large G-protein-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13600.1.S1_at	B	B1S	POPTR_0015s10640	POPTR_0015s10640 (7:2356)	NA	NA	Q66I61	UPF0428 protein CXorf56 homolog	AT5G63440.2	Protein of unknown function (DUF167) 	LOC_Os07g19470.1	"uncharacterized ACR, YggU family COG1872 containing protein, expressed"	Medtr3g144000.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136028.1.A1_at	B	B1S	POPTR_0001s46080	POPTR_0001s46080 (5:136)	NA	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.136041.1.A1_at	B	B1S	POPTR_0016s08790	POPTR_0016s08790 (5:368)	NA	NA	Q9FYP9	Importin subunit alpha-2	AT5G03070.1	importin alpha isoform 9 	LOC_Os01g06470.1	expressed protein	Medtr2g039000.1	"Importin alpha-like protein, beta-binding region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136046.1.A1_at	B	B1S	POPTR_0010s05970	POPTR_0010s05970 (8:510)	NA	NA	NA	NA	AT1G13130.1	Cellulase (glycosyl hydrolase family 5) protein 	LOC_Os04g40510.2	"glycosyl hydrolase family 5 protein, putative, expressed"	Medtr3g102620.1	Ricin B-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136066.1.A1_at	B	B1S	POPTR_0006s08100	POPTR_0006s08100 (4:589)	NA	NA	Q9FWS3	Zinc finger CCCH domain-containing protein 16	AT1G75340.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os06g49080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr4g107870.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.136101.1.A1_at	B	B1S	POPTR_0008s10300	POPTR_0008s10300 (0:121)	NA	NA	P57741	Probable prefoldin subunit 3	AT5G49510.2	prefoldin 3 	LOC_Os12g37590.1	"prefoldin, putative, expressed"	Medtr2g037940.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
PtpAffx.136105.1.A1_at	B	B1S	POPTR_0005s27940	POPTR_0005s27940 (8:118)	NA	NA	Q9FMY5	Splicing factor U2af small subunit B	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.136189.1.A1_at	B	B1S	POPTR_0002s16400	POPTR_0002s16400 (8:471)	NA	NA	Q40353	Mitogen-activated protein kinase homolog MMK2	AT4G01370.1	MAP kinase 4 	LOC_Os10g38950.1	"CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235567_72.1	"Serine/threonine protein kinase, active site AC235567.1 262008-267145 F EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13622.1.A1_at	B	B1S	POPTR_0003s16420	POPTR_0003s16420 (0:1056)	NA	NA	NA	NA	AT2G33510.1	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). 	LOC_Os02g31140.1	"major ampullate spidroin 2-2, putative, expressed"	Medtr7g005170.1	WW/Rsp5/WWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136240.1.S1_at	B	B1S	POPTR_0012s14450	POPTR_0012s14450 (6:1326)	NA	NA	Q61189	Methylosome subunit pICln	AT5G62290.2	nucleotide-sensitive chloride conductance regulator (ICln) family protein 	LOC_Os03g14520.1	"nucleotide-sensitive chloride conductance regulator containing protein, expressed"	NA	NA	GO:0006884|cell volume homeostasis||GO:0006821|chloride transport	NA	NA
PtpAffx.136262.1.S1_at	B	B1S	POPTR_0017s12460	POPTR_0017s12460 (4:355)	NA	NA	Q39131	Lamin-like protein	AT5G15350.1	early nodulin-like protein 17 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr6g013830.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.13627.3.A1_at	B	B1S	POPTR_0006s04380	POPTR_0006s04380 (4:266)	scaffold_6:2974542-2975511(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1363.2.A1_a_at	B	B1S	POPTR_0007s07750	POPTR_0007s07750 (5:245)	scaffold_7:6173265-6177383(+) (11)	NA	Q9Y3E1	Hepatoma-derived growth factor-related protein 3	AT5G23150.1	Tudor/PWWP/MBT domain-containing protein 	LOC_Os08g01054.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g101080.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136323.2.S1_at	B	B1S	POPTR_0002s13400	POPTR_0002s13400 (8:418)	scaffold_2:9941308-9941754(-) (9)	NA	Q9LN68	Probable galacturonosyltransferase-like 1	AT1G19300.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.13635.1.A1_at	B	B1S	POPTR_0001s10070	POPTR_0001s10070 (8:502)	NA	NA	Q42479	Calcium-dependent protein kinase 3	AT4G23650.1	calcium-dependent protein kinase 6 	LOC_Os01g43410.1	"CAMK_CAMK_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g009940.1	Protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13643.1.S1_at	B	B1S	POPTR_0003s15090	POPTR_0003s15090 (1:288)	NA	NA	Q9FKG3	"6-phosphofructokinase 4, chloroplastic"	AT5G61580.1	phosphofructokinase 4 	LOC_Os01g09570.1	"6-phosphofructokinase, putative, expressed"	Medtr1g112030.1	Phosphofructokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13648.1.S1_at	B	B1S	POPTR_0005s04860	POPTR_0005s04860 (6:350)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13658.1.A1_at	B	B1S	POPTR_0012s11400	POPTR_0012s11400 (7:463)	NA	NA	P22302	"Superoxide dismutase [Fe], chloroplastic (Fragment)"	AT5G51100.1	Fe superoxide dismutase 2 	LOC_Os06g05110.3	"superoxide dismutase, chloroplast, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
PtpAffx.13663.1.A1_at	B	B1S	POPTR_0016s02890	POPTR_0016s02890 (0:812)	NA	NA	NA	NA	AT3G56590.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g71220.1	"zinc finger protein, putative, expressed"	Medtr7g105620.1	"Putative RING zinc finger protein-, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136691.1.S1_at	B	B1S	POPTR_0001s35830	POPTR_0001s35830 (4:186)	NA	NA	Q04836	"31 kDa ribonucleoprotein, chloroplastic"	AT4G24770.1	31-kDa RNA binding protein 	LOC_Os09g39180.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g076830.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.13676.1.A1_at	B	B1S	POPTR_0006s23500	POPTR_0006s23500 (7:1735)	NA	NA	Q67ZE1	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2	AT2G26260.1	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 	LOC_Os03g29170.1	"sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0044237|cellular metabolic process||GO:0006694|steroid biosynthetic process	GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity||GO:0050662|coenzyme binding	GO:0005783|endoplasmic reticulum
PtpAffx.136782.1.S1_at	B	B1S	POPTR_0008s07870	POPTR_0008s07870 (4:2010)	NA	NA	Q84W55	"Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3"	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13679.1.A1_at	B	B1S	POPTR_0019s01510	POPTR_0019s01510 (7:342)	NA	NA	Q5R7Q3	Magnesium transporter NIPA2	AT2G21120.1	Protein of unknown function (DUF803) 	LOC_Os01g65310.1	"DUF803 domain containing, putative, expressed"	Medtr4g144260.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.136889.1.S1_at	B	B1S	POPTR_0013s15500	POPTR_0013s15500 (6:324)	NA	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.1369.1.A1_s_at	B	B1S	POPTR_0004s05610	POPTR_0004s05610 (5:79)	scaffold_4:4365711-4372611(+) (11)	NA	NA	NA	AT2G42610.2	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g111640.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136901.1.S1_at	B	B1S	POPTR_0005s07360	POPTR_0005s07360 (8:2900)	NA	NA	Q9NS86	LanC-like protein 2	AT5G65280.1	GCR2-like 1 	LOC_Os10g35480.1	"lanC-like protein 2, putative, expressed"	Medtr3g102050.1	Lanthionine synthetase C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136910.1.S1_at	B	B1S	POPTR_0007s09780	POPTR_0007s09780 (6:1117)	NA	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT5G67500.1	voltage dependent anion channel 2 	LOC_Os03g10510.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.136923.1.S1_at	B	B1S	POPTR_0012s05900	POPTR_0012s05900 (5:1403)	NA	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	Medtr1g083510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13697.2.S1_at	B	B1S	POPTR_0020s00510	POPTR_0020s00510 (6:549)	NA	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT1G03010.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g22600.1	"BTBN6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr7g130000.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.136970.1.A1_at	B	B1S	POPTR_0011s02670	POPTR_0011s02670 (6:370)	NA	NA	NA	NA	AT4G18260.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os05g49040.1	expressed protein	Medtr4g165820.1	Cytochrome b561 / ferric reductase transmembrane 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13700.1.S1_at	B	B1S	POPTR_0002s09120	POPTR_0002s09120 (7:956)	NA	NA	B0S1F7	Chaperone protein dnaJ	AT1G77930.2	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g43330.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g101890.1	Chaperone DnaJ 	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.137115.1.S1_s_at	B	B1S	POPTR_0006s21300	POPTR_0006s21300 (7:2025)	scaffold_6:20365467-20370204(+) (11)	NA	Q7XZZ3	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT2G38920.2	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related 	LOC_Os03g44810.2	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137142.1.S1_at	B	B1S	POPTR_0017s05760	POPTR_0017s05760 (7:1379)	NA	NA	NA	NA	AT3G59490.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g33992.2	expressed protein	Medtr2g118380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137277.1.S1_at	B	B1S	POPTR_0006s21980	POPTR_0006s21980 (3:190)	NA	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13732.1.S1_at	B	B1S	POPTR_0010s25090	POPTR_0010s25090 (6:218)	NA	NA	Q06850	Calcium-dependent protein kinase 1	AT5G04870.1	calcium dependent protein kinase 1 	LOC_Os03g57450.1	"CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.137379.1.S1_at	B	B1S	POPTR_0013s02670	POPTR_0013s02670 (6:457)	NA	NA	Q8RXX9	E3 ubiquitin-protein ligase ATL6	AT3G05200.1	RING/U-box superfamily protein 	LOC_Os09g29310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137381.1.S1_at	B	B1S	POPTR_0019s08560	POPTR_0019s08560 (8:2311)	scaffold_19:10067060-10069422(+) (10)	NA	Q8GYH6	Reticulon-like protein B16	AT3G10915.2	Reticulon family protein 	LOC_Os03g21840.1	"reticulon domain containing protein, putative, expressed"	Medtr6g012970.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.13744.2.S1_at	B	B1S	POPTR_0011s16970	POPTR_0011s16970 (5:824)	NA	NA	Q39254	Vacuolar cation/proton exchanger 2	AT3G13320.1	cation exchanger 2 	LOC_Os04g55940.2	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g107060.1	Calcium/proton exchanger superfamily 	NA	NA	GO:0016021|integral to membrane
PtpAffx.137481.2.S1_at	B	B1S	POPTR_0018s05470	POPTR_0018s05470 (8:3828)	NA	NA	O81488	PHD finger protein At5g26210	AT5G20510.1	alfin-like 5 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137539.1.S1_at	B	B1S	POPTR_0001s47380	POPTR_0001s47380 (2:122)	scaffold_1:47602646-47603835(+) (9)	NA	Q39254	Vacuolar cation/proton exchanger 2	AT3G13320.1	cation exchanger 2 	LOC_Os03g27960.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g107060.1	Calcium/proton exchanger superfamily 	NA	NA	GO:0016021|integral to membrane
PtpAffx.137546.1.S1_at	B	B1S	POPTR_0009s12340	POPTR_0009s12340 (8:786)	NA	NA	Q6NPM8	"Phosphatase IMPL2, chloroplastic"	AT4G39120.1	myo-inositol monophosphatase like 2 	LOC_Os07g09330.1	"inositol-1-monophosphatase, putative, expressed"	Medtr3g162810.1	"Inositol monophosphatase; Histidinol-phosphate phosphatase, putative, inositol monophosphatase "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.137562.1.S1_at	B	B1S	POPTR_0003s01880	POPTR_0003s01880 (7:127)	NA	NA	Q4U4N4	Interferon-induced GTP-binding protein Mx2	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.13757.1.A1_at	B	B1S	POPTR_0019s08400	POPTR_0019s08400 (4:508)	NA	NA	Q5ZJV4	UPF0557 protein C10orf119 homolog	AT2G40550.1	E2F target gene 1 	LOC_Os01g07260.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13763.1.A1_at	B	B1S	POPTR_0006s01610	POPTR_0006s01610 (0:161)	NA	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr8g148310.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137632.1.S1_at	B	B1S	POPTR_0004s14890	POPTR_0004s14890 (0:196)	NA	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13765.1.S1_at	B	B1S	POPTR_0014s14210	POPTR_0014s14210 (5:221)	NA	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr7g099400.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
PtpAffx.137651.1.S1_at	B	B1S	POPTR_0007s04830	POPTR_0007s04830 (8:1255)	NA	NA	NA	NA	AT5G08750.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g59580.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g143830.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137668.1.S1_at	B	B1S	POPTR_0005s15810	POPTR_0005s15810 (8:1472)	NA	NA	Q6J163	Auxin-induced protein 5NG4	AT4G08300.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097580.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.13767.1.S1_at	B	B1S	POPTR_0013s10610	POPTR_0013s10610 (7:231)	NA	NA	Q8CFE4	SCY1-like protein 2	AT1G22870.1	Protein kinase family protein with ARM repeat domain 	LOC_Os01g42950.1	"protein kinase family protein, putative, expressed"	Medtr4g032040.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.137672.1.S1_at	B	B1S	POPTR_0005s23640	POPTR_0005s23640 (4:389)	NA	NA	Q9LUH8	Heat stress transcription factor A-6b	AT3G22830.1	heat shock transcription factor  A6B 	LOC_Os07g08140.1	"heat stress transcription factor, putative, expressed"	Medtr1g083770.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.137683.1.S1_at	B	B1S	POPTR_0005s06140	POPTR_0005s06140 (7:117)	NA	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.13773.1.S1_at	B	B1A	POPTR_0005s24600	POPTR_0005s24600 (6:347)	NA	NA	NA	NA	AT2G20515.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g43670.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137746.1.S1_at	B	B1S	POPTR_0004s08650	POPTR_0004s08650 (7:873)	NA	NA	Q38851	Transcription repressor MYB6	AT4G09460.1	myb domain protein 6 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13778.2.S1_at	B	B1S	POPTR_0018s05050	POPTR_0018s05050 (8:302)	NA	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.2	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os06g36770.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137813.1.S1_at	B	B1S	POPTR_0016s05560	POPTR_0016s05560 (4:602)	NA	NA	A2BG43	Glycolipid transfer protein	AT2G34690.1	Glycolipid transfer protein (GLTP) family protein 	LOC_Os03g57140.1	"GLTP domain containing protein, putative, expressed"	Medtr2g130020.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.137829.2.S1_at	B	B1S	POPTR_0011s12420	POPTR_0011s12420 (6:656)	NA	NA	Q9ZNU2	NAC domain-containing protein 18	AT3G15510.1	NAC domain containing protein  2 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.13784.1.S1_at	B	B4S	POPTR_0014s15110	POPTR_0014s15110 (8:833)//POPTR_0014s15050 (6:743)//POPTR_0014s15080 (6:737)//POPTR_0014s17850 (0:705)	NA	NA	Q8H1Z0	Protein WAX2	AT1G02205.2	Fatty acid hydroxylase superfamily 	LOC_Os10g33250.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.137961.1.S1_s_at	B	B1S	POPTR_0001s35770	POPTR_0001s35770 (7:1830)	NA	NA	Q6BSS5	Pre-rRNA-processing protein ESF2	AT3G56510.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g46760.1	"RNA recognition motif containing protein, putative, expressed"	Medtr6g022740.1	"Activator of basal transcription 1, putative "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.137981.2.S1_at	B	B1S	POPTR_0012s08010	POPTR_0012s08010 (7:1384)	NA	NA	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.138.1.S1_at	B	B1S	POPTR_0001s00450	POPTR_0001s00450 (2:292)	NA	NA	NA	NA	AT4G16510.1	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g44330.1	"rho guanine nucleotide exchange factor, putative, expressed"	Medtr8g105950.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138019.1.S1_s_at	B	B1S	POPTR_0013s05000	POPTR_0013s05000 (4:294)	NA	NA	Q9SM43	"Violaxanthin de-epoxidase, chloroplastic"	AT1G08550.2	non-photochemical quenching 1 	LOC_Os04g31040.1	"violaxanthin de-epoxidase, putative, expressed"	Medtr7g143290.1	Lipocalin-related protein and Bos/Can/Equ allergen; Calycin 	GO:0055114|oxidation reduction	GO:0046422|violaxanthin de-epoxidase activity	GO:0009507|chloroplast
PtpAffx.13802.1.S1_at	B	B1A	POPTR_0017s03050	POPTR_0017s03050 (8:424)	NA	NA	Q8RY22	Protease Do-like 7	AT3G03380.1	DegP protease 7 	LOC_Os02g48180.1	"OsDegp2 - Putative Deg protease homologue, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.138074.1.A1_at	B	B1S	POPTR_0001s01980	POPTR_0001s01980 (1:218)	NA	NA	NA	NA	AT1G32230.2	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138124.1.S1_at	B	B2S	POPTR_0002s05060	POPTR_0005s23490 (8:1289)//POPTR_0002s05060 (8:1276)	NA	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr5g006700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138146.1.S1_at	B	B1S	POPTR_0002s04440	POPTR_0002s04440 (8:453)	NA	NA	O04336	Probable WRKY transcription factor 21	AT2G30590.1	WRKY DNA-binding protein 21 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr1g010400.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.13815.1.S1_at	B	B1S	POPTR_0015s06520	POPTR_0015s06520 (8:394)	scaffold_15:7436330-7436891(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138198.1.S1_at	B	B2S	POPTR_0012s09300	POPTR_0427s00200 (8:80)//POPTR_0012s09300 (8:80)	NA	NA	NA	NA	AT5G63160.1	BTB and TAZ domain protein 1 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr8g109870.1	"Zinc finger, TAZ-type; BTB/POZ; ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.138228.1.S1_a_at	B	B1S	POPTR_0007s04580	POPTR_0007s04580 (5:710)	NA	NA	Q9FY89	Vacuolar protein sorting-associated protein 20 homolog 2	AT5G09260.1	vacuolar protein sorting-associated protein 20.2 	LOC_Os02g38300.1	"SNF7 domain containing protein, putative, expressed"	Medtr3g142880.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.13823.1.S1_a_at	B	B1S	POPTR_0006s18710	POPTR_0006s18710 (6:132)	NA	NA	Q94CG0	CBL-interacting serine/threonine-protein kinase 21	AT5G57630.1	CBL-interacting protein kinase 21 	LOC_Os03g03510.1	"CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g128300.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13823.1.S1_at	B	B1S	POPTR_0006s18710	POPTR_0006s18710 (7:435)	NA	NA	Q94CG0	CBL-interacting serine/threonine-protein kinase 21	AT5G57630.1	CBL-interacting protein kinase 21 	LOC_Os03g03510.1	"CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g128300.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138243.2.S1_at	B	B1S	POPTR_0006s21290	POPTR_0006s21290 (8:330)	NA	NA	NA	NA	AT3G11890.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os08g29100.1	"SAM domain family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138247.1.S1_at	B	B1S	POPTR_0010s09220	POPTR_0010s09220 (3:374)	NA	NA	Q8W108	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3"	AT4G14710.3	RmlC-like cupins superfamily protein 	LOC_Os03g06620.1	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed"	NA	NA	GO:0071267|L-methionine salvage||GO:0071265|L-methionine biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0019509|L-methionine salvage from methylthioadenosine||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction||GO:0009086|methionine biosynthetic process	GO:0046872|metal ion binding||GO:0051213|dioxygenase activity	NA
PtpAffx.13828.1.A1_at	B	B1S	POPTR_0016s07220	POPTR_0016s07220 (0:441)	NA	NA	NA	NA	AT3G11660.1	NDR1/HIN1-like 1 	LOC_Os11g05860.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g107350.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.138305.1.S1_at	B	B1S	POPTR_0002s16570	POPTR_0002s16570 (4:363)	NA	NA	Q8RVQ5	Exocyst complex component 5	AT5G12370.3	exocyst complex component sec10 	LOC_Os12g13590.1	"exocyst complex component 5, putative, expressed"	Medtr8g026780.1	AMP-dependent synthetase and ligase; Exocyst complex component Sec10 	GO:0048278|vesicle docking||GO:0006887|exocytosis	NA	GO:0005737|cytoplasm
PtpAffx.138317.1.S1_at	B	B1A	POPTR_0006s28300	POPTR_0006s28300 (6:324)	scaffold_6:26027725-26030208(-) (9)	NA	NA	NA	AT2G20142.1	Toll-Interleukin-Resistance (TIR) domain family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13833.1.A1_at	B	B1S	POPTR_0010s14600	POPTR_0010s14600 (3:245)	NA	NA	Q9CAA9	Transcription factor bHLH49	AT1G68920.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g29830.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g077090.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.13836.1.A1_at	B	B1S	POPTR_0008s07180	POPTR_0008s07180 (0:2)	NA	NA	Q5U3I0	Sorting and assembly machinery component 50 homolog B	AT5G05520.1	Outer membrane OMP85 family protein 	LOC_Os05g39390.1	"outer membrane protein, OMP85 family protein, expressed"	Medtr3g094610.1	Bacterial surface antigen (D15) 	NA	NA	GO:0019867|outer membrane
PtpAffx.138368.1.S1_at	B	B2S	POPTR_0019s09170	POPTR_0019s09160 (0:596)//POPTR_0019s09170 (7:572)	scaffold_19:10704218-10707223(-) (10)	NA	NA	NA	AT4G10330.1	glycine-rich protein 	LOC_Os11g13880.1	expressed protein	Medtr6g070190.1	"glutamate receptor, ionotropic kainate 1, 2, 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138383.1.S1_at	B	B1S	POPTR_0014s13130	POPTR_0014s13130 (8:163)	NA	NA	Q5F3D7	U3 small nucleolar RNA-associated protein 15 homolog	AT2G47990.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g12320.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g111180.1	"U3 small nucleolar RNA-associated protein 15 homolog, related "	GO:0006364|rRNA processing||GO:0044260|cellular macromolecule metabolic process	NA	GO:0005730|nucleolus
PtpAffx.138389.1.S1_at	B	B1S	POPTR_0006s11640	POPTR_0006s11640 (6:508)	NA	NA	NA	NA	AT5G03670.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36420.1); Has 700 Blast hits to 624 proteins in 104 species: Archae - 0; Bacteria - 18; Metazoa - 333; Fungi - 60; Plants - 73; Viruses - 24; Other Eukaryotes - 192 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138446.1.S1_at	B	B1S	POPTR_0019s10220	POPTR_0019s10220 (6:395)	NA	NA	O80542	Ethylene-responsive transcription factor ERF019	AT1G22810.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g66270.1	"AP2 domain containing protein, expressed"	Medtr5g008830.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.138485.1.S1_at	B	B1S	POPTR_1313s00200	POPTR_1313s00200 (8:248)	NA	NA	Q9LK57	"Pentatricopeptide repeat-containing protein At3g13160, mitochondrial"	AT3G13160.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g57630.3	"pentatricopeptide containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138572.1.A1_at	B	B1A	POPTR_0010s01790	POPTR_0010s01790 (0:173)	NA	NA	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138637.1.A1_at	B	B1S	POPTR_0010s06730	POPTR_0010s06730 (5:245)	NA	NA	A2A4P0	ATP-dependent RNA helicase DHX8	AT1G27900.1	RNA helicase family protein 	LOC_Os11g20554.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.138650.1.A1_at	B	B1S	POPTR_0015s01330	POPTR_0015s01330 (6:482)	NA	NA	NA	NA	AT5G26760.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g04370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138656.1.A1_at	B	B1S	POPTR_0018s14910	POPTR_0018s14910 (0:12)	scaffold_18:14925009-14925133(+) (11)	NA	P26587	Aquaporin TIP3-1	AT1G73190.1	Aquaporin-like superfamily protein 	LOC_Os10g35050.1	"aquaporin protein, putative, expressed"	Medtr6g083850.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.138708.1.A1_at	B	B1S	POPTR_0002s01850	POPTR_0002s01850 (7:561)	NA	NA	Q8RWL2	Calcium-dependent protein kinase 29	AT1G76040.2	calcium-dependent protein kinase 29 	LOC_Os07g33110.4	"CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g031920.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138857.1.A1_at	B	B1S	POPTR_0009s14780	POPTR_0009s14780 (5:205)	scaffold_9:11514101-11514438(-) (9)	NA	O81117	Cytochrome P450 94A1	AT2G27690.1	"cytochrome P450, family 94, subfamily C, polypeptide 1 "	LOC_Os05g37250.1	"cytochrome P450, putative, expressed"	Medtr4g072990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.138901.1.A1_at	B	B1S	POPTR_0008s09000	POPTR_0008s09000 (8:1186)	NA	NA	Q9XI84	"Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT1G14030.1	Rubisco methyltransferase family protein 	LOC_Os09g24530.1	"ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed"	Medtr3g106630.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138920.1.A1_at	B	B1S	POPTR_0006s18920	POPTR_0006s18920 (8:355)	NA	NA	Q9SNC3	Fasciclin-like arabinogalactan protein 4	AT3G46550.1	Fasciclin-like arabinogalactan family protein 	LOC_Os01g62380.2	"fasciclin-like arabinogalactan protein, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139008.1.A1_at	B	B1A	POPTR_0006s01720	POPTR_0006s01720 (7:361)	scaffold_6:1055551-1057937(+) (9)	NA	Q8H125	Scarecrow-like protein 5	AT4G17230.1	SCARECROW-like 13 	LOC_Os10g22430.1	"gibberellin response modulator protein, putative, expressed"	Medtr8g148340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139133.1.S1_at	B	B1S	POPTR_0014s13780	POPTR_0014s13780 (2:40)	scaffold_14:10088270-10088626(-) (11)	NA	Q94J16	Heat stress transcription factor A-4b	AT4G18880.1	heat shock transcription factor  A4A 	LOC_Os01g54550.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g135910.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.139214.1.S1_at	B	B1S	POPTR_0008s14760	POPTR_0008s14760 (0:8)	NA	NA	O80605	Sucrose transport protein SUC3	AT2G02860.1	sucrose transporter 2 	LOC_Os02g58080.1	"transporter, major facilitator family, putative, expressed"	Medtr8g146560.1	"General substrate transporter; Sucrose/H+ symporter, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139227.1.S1_at	B	B3S	POPTR_0009s14530	POPTR_0009s14530 (7:5459)//POPTR_0009s14540 (0:730)//POPTR_0009s14550 (0:233)	NA	NA	O23006	LysM domain-containing GPI-anchored protein 2	AT2G17120.1	lysm domain GPI-anchored protein 2 precursor 	LOC_Os09g37600.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	AC235671_7.2	Peptidoglycan-binding LysM AC235671.2 31615-27432 E EGN_Mt090430 200	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.13954.1.A1_at	B	B1S	POPTR_0003s10950	POPTR_0003s10950 (8:490)	NA	NA	Q9S775	CHD3-type chromatin-remodeling factor PICKLE	AT5G44800.1	chromatin remodeling 4 	LOC_Os07g31450.1	"CHR4/MI-2-LIKE, putative, expressed"	Medtr4g165650.1	"SNF2-related; Chromo; Helicase, C-terminal; Zinc finger, FYVE/PHD-type; ; ; "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.139717.1.S1_at	B	B1S	POPTR_0005s04220	POPTR_0005s04220 (8:1274)	scaffold_5:2835688-2837043(+) (9)	NA	Q9ZNV9	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os08g44350.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr7g139810.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
PtpAffx.13979.1.S1_at	B	B1S	POPTR_0010s14200	POPTR_0010s14200 (3:266)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139901.1.A1_at	B	B1S	POPTR_0001s22790	POPTR_0001s22790 (7:259)	NA	NA	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os05g41070.1	"bZIP transcription factor, putative, expressed"	Medtr5g095290.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.139922.1.A1_at	B	B1S	POPTR_0006s25300	POPTR_0006s25300 (0:395)	NA	NA	NA	NA	AT4G32860.1	unknown protein; Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g36070.1	expressed protein	Medtr8g015610.1	"Avr9/Cf-9 rapidly elicited protein 146, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139928.1.A1_at	B	B1S	POPTR_0016s02160	POPTR_0016s02160 (7:514)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139929.1.A1_at	B	B1S	POPTR_0011s07490	POPTR_0011s07490 (0:2)	scaffold_11:8335234-8335410(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139992.1.A1_at	B	B1S	POPTR_0018s11450	POPTR_0018s11450 (0:14)	NA	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.139996.1.A1_at	B	B1S	POPTR_0014s03220	POPTR_0014s03220 (2:428)	NA	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.140030.1.A1_at	B	B1S	POPTR_0017s11660	POPTR_0017s11660 (3:411)	NA	NA	Q5EA79	Aldose 1-epimerase	AT3G47800.1	Galactose mutarotase-like superfamily protein 	LOC_Os02g36600.1	"aldose 1-epimerase, putative, expressed"	Medtr7g009340.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.140041.1.A1_at	B	B2S	POPTR_0001s42780	POPTR_0001s42780 (5:292)//POPTR_0240s00210 (0:128)	NA	NA	Q03666	Probable glutathione S-transferase	AT1G17180.1	glutathione S-transferase TAU 25 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140067.1.S1_at	B	B1S	POPTR_0016s07400	POPTR_0016s07400 (0:951)	NA	NA	Q9SVD7	Ubiquitin-conjugating enzyme E2 variant 1D	AT3G52560.1	ubiquitin E2 variant 1D-4 	LOC_Os09g12570.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g157390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140068.2.S1_a_at	B	B1S	POPTR_0018s01490	POPTR_0018s01490 (7:321)	NA	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.2	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.140086.1.A1_at	B	B1S	POPTR_0015s14740	POPTR_0015s14740 (7:367)	scaffold_15:14227821-14228296(+) (11)	NA	O22149	Probable pectinesterase/pectinesterase inhibitor 17	AT2G45220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr3g010070.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.140124.1.A1_at	B	B1S	POPTR_0014s04160	POPTR_0014s04160 (3:143)	NA	NA	Q9FZF1	Peroxisomal membrane protein 11A	AT1G47750.1	peroxin 11A 	LOC_Os03g19010.1	"peroxisomal biogenesis factor 11, putative, expressed"	NA	NA	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
PtpAffx.140157.1.A1_at	B	B1S	POPTR_0010s12650	POPTR_0010s12650 (8:369)	scaffold_10:12654047-12654573(+) (11)	NA	Q05047	Secologanin synthase	AT5G24910.1	"cytochrome P450, family 714, subfamily A, polypeptide 1 "	LOC_Os12g02640.1	"cytochrome P450 72A1, putative, expressed"	Medtr8g008330.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.140187.1.A1_at	B	B1S	POPTR_0019s07800	POPTR_0019s07800 (6:847)	scaffold_19:9035905-9036878(+) (10)	NA	Q6GNT2	UPF0454 protein C12orf49 homolog	AT3G59390.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2054 (InterPro:IPR019352); Has 184 Blast hits to 184 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 	LOC_Os11g16560.1	expressed protein	AC233109_9.1	"Ribulose bisphosphate carboxylase, small chain AC233109.4 42282-46041 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140205.1.A1_at	B	B1S	POPTR_0006s05910	POPTR_0006s05910 (7:630)	NA	NA	NA	NA	AT2G47910.1	chlororespiratory reduction 6 	LOC_Os08g07060.1	"CRR6, putative, expressed"	Medtr8g122450.1	"CRR6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140209.1.A1_at	B	B1S	POPTR_0014s13730	POPTR_0014s13730 (6:170)	NA	NA	Q9USZ2	Uncharacterized protein C11G11.07	AT1G12930.1	ARM repeat superfamily protein 	LOC_Os11g34120.1	"exportin 1, putative"	Medtr7g099720.1	Exportin-1/Importin-beta-like 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.140323.1.A1_at	B	B1S	POPTR_0001s17870	POPTR_0001s17870 (5:107)	scaffold_1:14804141-14804350(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g07890.1	expressed protein	Medtr1g126860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140385.1.A1_at	B	B1S	POPTR_0018s01960	POPTR_0018s01960 (5:261)	NA	NA	O22060	Sucrose-phosphate synthase 1	AT5G20280.1	sucrose phosphate synthase 1F 	LOC_Os08g20660.2	"sucrose-phosphate synthase, putative, expressed"	Medtr8g121670.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.140387.1.A1_at	B	B1S	POPTR_0018s04980	POPTR_0018s04980 (4:563)	scaffold_18:4419734-4420498(+) (9)	NA	P42044	"Ferrochelatase-2, chloroplastic"	AT5G26030.2	ferrochelatase 1 	LOC_Os09g12560.2	"ferrochelatase-2, chloroplast precursor, putative, expressed"	Medtr3g140120.1	Ferrochelatase 	GO:0006783|heme biosynthetic process	GO:0004325|ferrochelatase activity	NA
PtpAffx.140422.1.A1_at	B	B1S	POPTR_0010s26190	POPTR_0010s26190 (6:246)	scaffold_10:21503276-21503547(+) (11)	NA	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog 1	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58130.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140440.1.A1_at	B	B1S	POPTR_0006s04850	POPTR_0006s04850 (6:219)	NA	NA	Q5ZKD5	RRP12-like protein	AT4G23540.1	ARM repeat superfamily protein 	LOC_Os01g72780.1	expressed protein	Medtr1g087200.1	"Protein of unknown function, NUC173 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140462.1.A1_s_at	B	B1S	POPTR_0015s10070	POPTR_0015s10070 (3:315)	scaffold_15:11110269-11110768(-) (11)	NA	NA	NA	AT2G04410.1	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr8g109980.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140476.1.A1_at	B	B1S	POPTR_0006s03610	POPTR_0006s03610 (4:141)	scaffold_6:2362542-2363089(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140508.1.A1_at	B	B1A	POPTR_0001s04020	POPTR_0001s04020 (7:1201)	scaffold_1:3182069-3185881(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33620.1	"cytochrome P450 domain containing protein, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.140563.1.A1_at	B	B1A	POPTR_0014s15570	POPTR_0014s15570 (2:157)	NA	NA	NA	NA	AT5G55140.1	ribosomal protein L30 family protein 	LOC_Os08g01859.1	"ribosomal protein L30 containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.140648.1.A1_at	B	B1S	POPTR_0002s25900	POPTR_0002s25900 (1:373)	NA	NA	Q9FNC9	Mitochondrial import receptor subunit TOM22 homolog 2	AT5G43970.1	translocase of outer membrane 22-V 	LOC_Os02g29400.1	expressed protein	Medtr1g065560.1	"Mitochondrial import translocase, subunit Tom22 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140660.1.A1_at	B	B1S	POPTR_0006s10550	POPTR_0006s10550 (1:37)	scaffold_6:7898674-7899198(-) (11)	NA	P91850	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os11g01600.1	"macrophage migration inhibitory factor, putative, expressed"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140797.1.A1_at	B	B2A	POPTR_1202s00195	POPTR_1202s00195 (6:257)//POPTR_0005s03580 (5:244)	scaffold_1202:295-766(-) (11)//scaffold_5:2384869-2385339(-) (11)//scaffold_5:2401914-2402353(-) (10)	NA	NA	NA	AT1G55020.1	lipoxygenase 1 	NA	NA	Medtr1g099570.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140887.1.A1_at	B	B1S	POPTR_0045s00230	POPTR_0045s00230 (7:252)	scaffold_45:44654-45183(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140915.1.A1_at	B	B1S	POPTR_0003s08600	POPTR_0003s08600 (0:60)	scaffold_3:10012484-10012917(+) (10)	NA	Q6LA43	Two-component response regulator-like APRR2	AT4G18020.6	CheY-like two-component responsive regulator family protein 	LOC_Os01g13740.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr5g014220.2	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140930.1.A1_at	B	B1S	POPTR_0002s20090	POPTR_0002s20090 (8:447)	scaffold_2:16013859-16014392(+) (10)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os04g18090.1	"histone H1, putative, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.140952.1.A1_at	B	B1S	POPTR_0001s01920	POPTR_0001s01920 (8:362)	scaffold_1:1384331-1384871(-) (11)	NA	Q7ZVZ7	Abhydrolase domain-containing protein FAM108C1	AT1G32190.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g06420.2	"abhydrolase domain-containing protein FAM108C1, putative, expressed"	Medtr5g029090.1	"Abhydrolase domain-containing protein FAM108C1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140982.1.A1_at	B	B1S	POPTR_0012s04370	POPTR_0012s04370 (7:375)	scaffold_12:3608278-3608743(+) (9)	NA	Q5TEA6	Protein sel-1 homolog 2	AT1G18260.1	HCP-like superfamily protein 	LOC_Os03g15350.1	"Sel1 repeat domain containing protein, putative, expressed"	Medtr4g154740.1	Sel1-like repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141101.1.A1_at	B	B1S	POPTR_0007s10010	POPTR_0007s10010 (7:103)	NA	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141120.1.A1_at	B	B1S	POPTR_0009s15980	POPTR_0009s15980 (8:563)	NA	NA	Q9ZVC7	Xylogen-like protein 11	AT3G43720.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g41030.1	"LTPL67 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g111400.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141125.1.A1_at	B	B1A	POPTR_0009s15350	POPTR_0009s15350 (6:190)	scaffold_9:11898278-11898544(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141141.1.A1_at	B	B1S	POPTR_0001s08920	POPTR_0001s08920 (7:150)	NA	NA	Q6GMF8	Rhomboid family member 1	AT1G63120.1	RHOMBOID-like 2 	LOC_Os03g02530.1	"OsRhmbd7 - Putative Rhomboid homologue, expressed"	Medtr1g129260.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.141198.1.S1_at	B	B1S	POPTR_0010s07030	POPTR_0010s07030 (8:343)	NA	NA	Q7Z2K6	Endoplasmic reticulum metallopeptidase 1	AT1G67420.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os07g19530.1	"peptidase, putative, expressed"	Medtr1g120840.1	ArgE/dapE/ACY1/CPG2/yscS; Peptidase M28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.141254.1.A1_at	B	B1S	POPTR_0015s08040	POPTR_0015s08040 (0:982)	NA	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT5G62580.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141279.1.A1_at	B	B1S	POPTR_0014s16550	POPTR_0014s16550 (1:435)	scaffold_14:12597778-12600340(-) (10)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT4G16360.3	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os03g20340.1	"SNF1-related protein kinase regulatory subunit beta-1, putative, expressed"	Medtr5g095330.1	"SNF1-related protein kinase regulatory subunit beta-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14147.1.S1_at	B	B1S	POPTR_0017s14430	POPTR_0017s14430 (8:409)	scaffold_17:14487643-14488146(+) (10)	NA	NA	NA	AT5G57685.1	glutamine dumper 3 	LOC_Os06g42660.1	expressed protein	Medtr3g138690.1	GDU1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141523.1.A1_at	B	B1A	POPTR_0006s19910	POPTR_0006s19910 (6:100)	scaffold_6:18922828-18923233(-) (11)	NA	NA	NA	AT2G24240.1	BTB/POZ domain with WD40/YVTN repeat-like protein 	LOC_Os04g42310.1	"B4-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed"	Medtr8g145520.1	K+ channel tetramerisation 	GO:0006813|potassium ion transport	GO:0005249|voltage-gated potassium channel activity	GO:0008076|voltage-gated potassium channel complex
PtpAffx.141537.1.A1_at	B	B1S	POPTR_0009s01460	POPTR_0009s01460 (7:857)	NA	NA	Q8T1P1	Uncharacterized protein DDB_G0273453/DDB_G0273565	AT5G60760.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g39870.1	"2-phosphoglycerate kinase-related, putative, expressed"	AC235487_44.1	"2-phosphoglycerate kinase-related, putative AC235487.1 210241-205859 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141553.1.S1_at	B	B1S	POPTR_0010s01570	POPTR_0010s01570 (6:1600)	NA	NA	Q39659	Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a	AT3G06860.1	multifunctional protein 2 	LOC_Os01g24680.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr8g138540.1	3-hydroxyacyl-CoA dehydrogenase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.141577.2.S1_at	B	B1S	POPTR_0002s04160	POPTR_0002s04160 (7:680)	NA	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT2G31280.1	conserved peptide upstream open reading frame 7 	LOC_Os01g64560.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141577.3.A1_at	B	B1A	POPTR_0002s04160	POPTR_0002s04160 (8:516)	NA	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT2G31280.1	conserved peptide upstream open reading frame 7 	LOC_Os01g64560.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141730.1.S1_at	B	B1S	POPTR_0005s12770	POPTR_0005s12770 (7:262)	NA	NA	C4XGC2	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.14176.2.S1_s_at	B	B1S	POPTR_0001s37750	POPTR_0001s37750 (2:943)	scaffold_1:36838792-36839989(+) (11)	NA	NA	NA	AT5G55850.1	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141999.1.S1_at	B	B3S	POPTR_0018s05980	POPTR_0018s06000 (3:1504)//POPTR_0018s05980 (4:286)//POPTR_0018s05990 (0:197)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142.2.S1_at	B	B1S	POPTR_0011s15180	POPTR_0011s15180 (5:231)	NA	NA	P49793	Nuclear pore complex protein Nup98	AT1G10390.2	Nucleoporin autopeptidase 	LOC_Os12g06890.1	"OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed"	Medtr5g105600.1	"Peptidase S59, nucleoporin "	GO:0006810|transport	NA	GO:0005643|nuclear pore
PtpAffx.142106.1.S1_at	B	B1S	POPTR_0014s12890	POPTR_0014s12890 (2:2173)	NA	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G62970.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os12g35320.1	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr2g025150.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.142106.2.S1_at	B	B1S	POPTR_0014s12890	POPTR_0014s12890 (1:1627)	NA	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G62970.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os12g35320.1	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr2g025150.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.142169.1.S1_at	B	B1S	POPTR_0006s26380	POPTR_0006s26380 (4:233)	NA	NA	Q39103	Gibberellin 3-beta-dioxygenase 1	AT1G15550.1	gibberellin 3-oxidase 1 	LOC_Os01g08220.1	"gibberellin 3-beta-dioxygenase 2-2, putative, expressed"	Medtr1g013080.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.142180.1.S1_at	B	B1S	POPTR_0005s02240	POPTR_0005s02240 (7:453)	NA	NA	Q9M9W7	Putative pectinesterase/pectinesterase inhibitor 22	AT3G05620.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g15039.1	"pectinesterase, putative, expressed"	Medtr7g138400.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.142183.1.S1_at	B	B1S	POPTR_0013s01990	POPTR_0013s01990 (4:544)	NA	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT3G50700.1	indeterminate(ID)-domain 2 	LOC_Os02g31890.1	ZOS2-08 - C2H2 zinc finger protein	Medtr7g130150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.142254.1.S1_at	B	B1S	POPTR_0003s17940	POPTR_0003s17940 (8:279)	NA	NA	NA	NA	AT1G15910.1	XH/XS domain-containing protein 	LOC_Os01g44230.1	"transcription factor X1, putative, expressed"	Medtr8g145980.1	"Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142297.1.S1_at	B	B1S	POPTR_0001s12020	POPTR_0001s12020 (7:680)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14238.5.A1_x_at	B	B2S	POPTR_0006s05040	POPTR_0006s05040 (8:566)//POPTR_0006s05050 (0:435)	scaffold_6:3505637-3508315(-) (10)	NA	NA	NA	AT1G01170.2	Protein of unknown function (DUF1138) 	LOC_Os06g02420.1	"ATOZI1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142395.3.S1_at	B	B1S	POPTR_0015s10280	POPTR_0015s10280 (4:160)	NA	NA	Q93Y35	Probable 26S proteasome non-ATPase regulatory subunit 6	AT4G24820.2	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os04g40850.1	"26S proteasome non-ATPase regulatory subunit 6, putative, expressed"	Medtr8g109840.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142403.1.S1_at	B	B1S	POPTR_0002s25690	POPTR_0002s25690 (8:1092)	NA	NA	Q8RY79	Tyrosine decarboxylase 1	AT2G20340.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os07g25590.1	"decarboxylase, putative, expressed"	Medtr7g117140.1	Pyridoxal-dependent decarboxylase; ; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.142419.1.A1_at	B	B5S	POPTR_0019s03700	POPTR_0019s03710 (0:397)//POPTR_0019s03970 (0:390)//POPTR_0922s00200 (0:390)//POPTR_0019s03720 (0:390)//POPTR_0019s03700 (1:388)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.142466.1.A1_at	B	B1S	POPTR_0018s13780	POPTR_0018s13780 (0:209)	NA	NA	P43298	Probable receptor protein kinase TMK1	AT3G23750.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr3g104610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.14248.2.S1_at	B	B1S	POPTR_0007s13410	POPTR_0007s13410 (8:1237)	scaffold_7:13517945-13519293(+) (11)	NA	NA	NA	AT4G36440.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 41 Blast hits to 41 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g15790.3	expressed protein	Medtr8g092780.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142480.1.A1_at	B	B1S	POPTR_0008s21121	POPTR_0008s21121 (0:201)	NA	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os06g42640.3	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.142530.1.A1_at	B	B1S	POPTR_0014s01030	POPTR_0014s01030 (1:166)	NA	NA	Q94JY4	Protein BRICK 1	AT2G22640.1	"BRICK1, putative "	LOC_Os02g58320.1	"BRICK1, putative, expressed"	Medtr5g032410.1	"Protein BRICK1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142538.1.A1_at	B	B1S	POPTR_0009s16060	POPTR_0009s16060 (5:793)	NA	NA	NA	NA	AT2G27090.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os03g20530.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g094830.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142547.1.A1_at	B	B1S	POPTR_0001s10680	POPTR_0001s10680 (0:146)	NA	NA	NA	NA	AT4G10970.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g28690.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142597.1.A1_at	B	B1S	POPTR_0004s07340	POPTR_0004s07340 (8:711)	scaffold_4:6056361-6057072(-) (10)	NA	Q5ZMT7	Uncharacterized aarF domain-containing protein kinase 1	AT1G65950.1	Protein kinase superfamily protein 	LOC_Os11g34750.1	"ABC1 family domain containing protein, putative, expressed"	Medtr5g084940.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142624.1.A1_at	B	B1A	POPTR_0015s14770	POPTR_0015s14770 (5:271)	NA	NA	Q9FWX2	NAC domain-containing protein 7	AT1G12260.1	NAC 007 	LOC_Os02g42970.1	"NAC domain containing protein, putative"	Medtr8g106290.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.142714.1.S1_at	B	B1S	POPTR_0016s06280	POPTR_0016s06280 (8:478)	NA	NA	NA	NA	AT3G11950.2	TRAF-like superfamily protein 	LOC_Os05g23950.1	"TRAF-type zinc finger family protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.142779.1.S1_at	B	B2S	POPTR_0003s17100	POPTR_0003s17100 (3:251)//POPTR_0003s17110 (3:145)	scaffold_3:16567877-16568970(+) (11)	NA	Q8GZ43	RanBP2-type zinc finger protein At1g67325	AT1G67325.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os08g41010.2	"zinc finger family protein, putative, expressed"	Medtr3g103960.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.142827.3.S1_at	B	B2S	POPTR_0018s02670	POPTR_0018s02670 (8:271)//POPTR_0018s02680 (6:271)	NA	NA	Q9SZ53	Probable protein phosphatase 2C 60	AT4G31860.1	Protein phosphatase 2C family protein 	LOC_Os06g44210.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142841.1.S1_at	B	B1S	POPTR_0006s21440	POPTR_0006s21440 (0:166)	NA	NA	NA	NA	AT3G11690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g104580.1	"pollen preferential protein^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14286.1.S1_at	B	B1S	POPTR_0014s11930	POPTR_0014s11930 (5:506)	NA	NA	NA	NA	AT4G13030.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g19280.1	expressed protein	Medtr7g062150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142862.1.S1_at	B	B1S	POPTR_0018s09750	POPTR_0018s09750 (5:585)	NA	NA	Q03194	Plasma membrane ATPase 4	AT2G18960.1	H(+)-ATPase 1 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.142939.1.S1_at	B	B1S	POPTR_0003s20760	POPTR_0003s20760 (7:495)	NA	NA	P35658	Nuclear pore complex protein Nup214	AT1G55540.2	Nuclear pore complex protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143034.1.S1_at	B	B1S	POPTR_0014s09940	POPTR_0014s09940 (8:347)	NA	NA	Q54Y72	Rho GTPase-activating protein gacA	AT2G46710.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os04g48790.1	"rhoGAP domain containing protein, expressed"	Medtr8g029150.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.143284.1.S1_at	B	B1S	POPTR_0010s25500	POPTR_0010s25500 (6:612)	NA	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT1G16880.1	uridylyltransferase-related 	LOC_Os08g14440.2	"uridylyltransferase-related, putative, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143290.1.S1_at	B	B1S	POPTR_0003s09530	POPTR_0003s09530 (6:1397)	NA	NA	NA	NA	AT1G32230.1	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143302.1.S1_at	B	B1S	POPTR_0009s06080	POPTR_0009s06080 (7:2340)	NA	NA	Q0WRX3	Serine carboxypeptidase-like 40	AT3G63470.1	serine carboxypeptidase-like 40 	LOC_Os07g46350.1	"OsSCP40 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr3g040960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.143308.1.S1_at	B	B1S	POPTR_0009s03570	POPTR_0009s03570 (6:350)	NA	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g01060.1	"protein kinase family protein, putative, expressed"	Medtr8g031980.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.14337.1.S1_at	B	B2S	POPTR_0004s19860	POPTR_0004s19860 (6:535)//POPTR_1310s00210 (4:431)	NA	NA	P05478	18.5 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr6g067230.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14337.3.S1_at	B	B2S	POPTR_0004s19890	POPTR_1310s00200 (0:147)//POPTR_0004s19890 (0:77)	NA	NA	P05478	18.5 kDa class I heat shock protein	AT2G29500.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr6g067320.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143482.1.S1_at	B	B1S	POPTR_0001s05370	POPTR_0001s05370 (4:1387)	NA	NA	O23116	ETHYLENE INSENSITIVE 3-like 3 protein	AT1G73730.1	ETHYLENE-INSENSITIVE3-like 3 	LOC_Os09g31400.1	"ethylene-insensitive 3, putative, expressed"	Medtr2g118010.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.143505.1.S1_s_at	B	B1S	POPTR_0011s08260	POPTR_0011s08260 (6:141)	scaffold_11:1873368-1873638(-) (11)//scaffold_11:9365073-9365343(+) (11)	NA	NA	NA	AT2G34585.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os07g05950.1	expressed protein	Medtr2g024490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143567.1.S1_at	B	B1S	POPTR_0003s07050	POPTR_0003s07050 (6:557)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.143676.2.S1_at	B	B1S	POPTR_0003s07570	POPTR_0003s07570 (5:478)	scaffold_3:9130465-9136831(-) (10)	NA	O34990	Formyltetrahydrofolate deformylase	AT5G47435.1	"formyltetrahydrofolate deformylase, putative "	LOC_Os03g01222.4	"formyl transferase, putative, expressed"	Medtr7g014920.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.143705.1.S1_at	B	B1S	POPTR_0017s14050	POPTR_0017s14050 (8:439)	NA	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT1G67230.1	little nuclei1 	LOC_Os02g48010.1	"nuclear matrix constituent protein 1-like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143754.2.S1_at	B	B1S	POPTR_0014s12910	POPTR_0014s12910 (7:166)	NA	NA	O82256	Zinc finger protein CONSTANS-LIKE 13	AT2G47890.1	B-box type zinc finger protein with CCT domain 	LOC_Os07g47140.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g129880.1	"Zinc finger, B-box; CCT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143837.2.S1_at	B	B1S	POPTR_0015s13720	POPTR_0015s13720 (5:1024)	NA	NA	NA	NA	AT4G26810.2	SWIB/MDM2 domain superfamily protein 	LOC_Os09g04720.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144067.1.S1_at	B	B1S	POPTR_0018s13210	POPTR_0018s13210 (0:7)	scaffold_18:13617759-13617832(-) (11)	NA	Q84TI7	Sodium transporter HKT1	AT4G10310.1	high-affinity K+ transporter 1 	LOC_Os02g07830.1	"OsHKT1;3 - Na+ transporter, expressed"	Medtr6g092400.1	Cation transporter 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	NA
PtpAffx.144090.1.S1_at	B	B1S	POPTR_0004s24450	POPTR_0004s24450 (8:610)	NA	NA	Q9C6W5	ABC transporter G family member 14	AT1G31770.1	ATP-binding cassette 14 	LOC_Os03g06139.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.144094.1.S1_at	B	B1S	POPTR_0002s05950	POPTR_0002s05950 (7:213)	NA	NA	NA	NA	AT1G06475.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr5g098540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144124.1.S1_at	B	B1S	POPTR_0010s21840	POPTR_0010s21840 (8:306)	NA	NA	Q9FRL8	Glutathione S-transferase DHAR2	AT1G75270.1	dehydroascorbate reductase 2 	LOC_Os05g02530.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144221.4.S1_at	B	B1S	POPTR_0060s00240	POPTR_0060s00240 (0:267)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.1443.1.A1_at	B	B1S	POPTR_0025s00740	POPTR_0025s00740 (5:198)	NA	NA	O22060	Sucrose-phosphate synthase 1	AT5G20280.1	sucrose phosphate synthase 1F 	LOC_Os08g20660.2	"sucrose-phosphate synthase, putative, expressed"	Medtr8g121670.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.144410.1.S1_at	B	B1S	POPTR_0002s00960	POPTR_0002s00960 (8:639)	scaffold_2:462912-463443(-) (9)	NA	Q9HGL2	Uncharacterized calcium-binding protein C800.10c	AT1G20760.1	Calcium-binding EF hand family protein 	LOC_Os03g03830.1	"EF hand family protein, putative, expressed"	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144416.1.S1_at	B	B3S	POPTR_0017s11380	POPTR_0017s11400 (8:311)//POPTR_0017s11380 (8:311)//POPTR_1312s00200 (8:310)	scaffold_1312:3390-3701(+) (9)	NA	Q9ZQ99	Cytokinin-O-glucosyltransferase 1	AT5G12890.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g42690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g094730.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144427.1.S1_at	B	B1S	POPTR_0002s15090	POPTR_0002s15090 (7:399)	NA	NA	NA	NA	AT5G42660.1	Protein of unknown function (DUF616) 	LOC_Os01g54530.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr1g025800.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144435.1.S1_at	B	B2S	POPTR_0001s36900	POPTR_0001s36900 (7:794)//POPTR_0011s09450 (0:621)	NA	NA	Q6H6V4	Auxin response factor 6	AT1G30330.1	auxin response factor 6 	LOC_Os02g06910.1	"auxin response factor 6, putative, expressed"	Medtr2g022250.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.144454.1.A1_at	B	B1S	POPTR_0018s14000	POPTR_0018s14000 (7:629)	NA	NA	Q54VM3	TBC1 domain family member 5 homolog A	AT4G29950.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os08g40620.1	"rabGAP/TBC domain-containing protein, putative, expressed"	Medtr8g129650.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.14449.1.A1_at	B	B1S	POPTR_0001s19440	POPTR_0001s19440 (7:360)	NA	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144590.1.S1_at	B	B1S	POPTR_0001s47010	POPTR_0001s47010 (8:33)	NA	NA	Q7ZWM6	Obg-like ATPase 1	AT1G30580.1	GTP binding 	LOC_Os08g09940.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.144653.2.A1_at	B	B1S	POPTR_0007s10480	POPTR_0007s10480 (2:180)	NA	NA	Q9M3H5	"Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic"	AT4G37270.1	heavy metal atpase 1 	LOC_Os06g47550.1	"cadmium/zinc-transporting ATPase, putative, expressed"	Medtr2g041260.1	Cof protein; Heavy metal translocating P-type ATPase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.14466.1.S1_at	B	B1S	POPTR_0001s39310	POPTR_0001s39310 (8:250)	scaffold_1:38522014-38522264(+) (9)	NA	Q9SYL9	"50S ribosomal protein L13, chloroplastic"	AT1G78630.1	Ribosomal protein L13 family protein 	LOC_Os01g54540.1	"ribosomal protein L13, putative, expressed"	Medtr3g106560.1	Ribosomal protein L13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.14466.2.S1_at	B	B1S	POPTR_0011s10720	POPTR_0011s10720 (8:125)	NA	NA	Q9SYL9	"50S ribosomal protein L13, chloroplastic"	AT1G78630.1	Ribosomal protein L13 family protein 	LOC_Os01g54540.1	"ribosomal protein L13, putative, expressed"	Medtr3g106560.1	Ribosomal protein L13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.144681.1.S1_at	B	B1S	POPTR_0006s28030	POPTR_0006s28030 (5:828)	NA	NA	Q5RDY2	Transmembrane 9 superfamily member 4	AT5G10840.1	Endomembrane protein 70 protein family 	LOC_Os09g38530.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr1g016840.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.144708.1.S1_at	B	B1S	POPTR_0006s15850	POPTR_0006s15850 (8:542)	NA	NA	Q9FH28	Chaperone protein dnaJ 49	AT3G57340.2	"Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) "	LOC_Os01g37560.3	"chaperone protein dnaJ 49, putative, expressed"	Medtr8g139780.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.144719.1.S1_at	B	B1S	POPTR_0016s13970	POPTR_0016s13970 (8:1445)	NA	NA	Q94AL9	"Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial"	AT2G38400.1	alanine:glyoxylate aminotransferase 3 	LOC_Os05g39770.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.144824.1.S1_at	B	B1S	POPTR_0018s11950	POPTR_0018s11950 (4:264)	NA	NA	NA	NA	AT2G24300.2	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144849.1.S1_at	B	B1S	POPTR_0018s10090	POPTR_0018s10090 (8:66)	NA	NA	Q9FKM5	DNA repair protein XRCC3 homolog	AT5G57450.2	homolog of X-ray repair cross complementing 3 (XRCC3) 	LOC_Os02g35450.1	"DNA repair protein Rad51, putative"	Medtr4g025950.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144853.1.S1_at	B	B1S	POPTR_0010s23570	POPTR_0010s23570 (8:535)	NA	NA	Q93Z04	Probable pectate lyase 13	AT5G04310.1	Pectin lyase-like superfamily protein 	LOC_Os10g31910.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144878.1.S1_at	B	B1S	POPTR_0007s14820	POPTR_0007s14820 (7:66)	NA	NA	NA	NA	AT1G58420.1	Uncharacterised conserved protein UCP031279 	NA	NA	Medtr8g101800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144878.1.S1_s_at	B	B1S	POPTR_0007s14820	POPTR_0007s14820 (8:437)	NA	NA	NA	NA	AT1G58420.1	Uncharacterised conserved protein UCP031279 	NA	NA	Medtr8g101800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144965.1.A1_at	B	B1S	POPTR_0010s00850	POPTR_0010s00850 (7:526)	NA	NA	Q9LRZ5	Phospholipase D p1	AT3G16785.1	phospholipase D P1 	LOC_Os05g29050.2	"phospholipase D p1, putative, expressed"	Medtr1g100110.1	Phospholipase D/Transphosphatidylase; Pleckstrin homology-type 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.145008.1.A1_at	B	B1S	POPTR_0014s14510	POPTR_0014s14510 (3:386)	NA	NA	Q6ZY51	"Phosphoglucan, water dikinase, chloroplastic"	AT5G26570.1	"catalytics;carbohydrate kinases;phosphoglucan, water dikinases "	LOC_Os12g20150.1	"phosphoglucan, water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation||GO:0005975|carbohydrate metabolic process	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.145009.1.A1_at	B	B1A	POPTR_0005s07980	POPTR_0005s07980 (7:268)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145016.1.A1_at	B	B1S	POPTR_0015s11980	POPTR_0015s11980 (8:382)	NA	NA	Q9ZUH5	Short-chain dehydrogenase/reductase 2	AT5G51030.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g70430.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g151460.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.145046.1.A1_at	B	B1S	POPTR_0011s06210	POPTR_0011s06210 (0:417)	NA	NA	NA	NA	AT3G54070.1	Ankyrin repeat family protein 	NA	NA	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145056.1.A1_at	B	B1S	POPTR_0004s04210	POPTR_0004s04210 (1:818)	NA	NA	NA	NA	AT3G15390.1	silencing defective 5 	LOC_Os02g42670.1	"DUF1771 domain containing protein, putative, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145062.1.A1_at	B	B1S	POPTR_0009s12150	POPTR_0009s12150 (0:123)	NA	NA	P46301	40S ribosomal protein S25	AT4G39200.1	Ribosomal protein S25 family protein 	LOC_Os08g44480.1	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145088.1.A1_at	B	B1S	POPTR_0010s00520	POPTR_0010s00520 (7:696)	scaffold_10:267412-268238(-) (9)	NA	NA	NA	AT3G06960.1	pigment defective 320 	LOC_Os01g14820.1	expressed protein	Medtr4g089750.1	"Fgenesh protein 89, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145103.1.A1_at	B	B1S	POPTR_0019s15160	POPTR_0019s15160 (7:186)	NA	NA	NA	NA	AT2G30500.2	Kinase interacting (KIP1-like) family protein 	LOC_Os01g07370.2	"KIP1, putative, expressed"	Medtr5g083340.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14518.1.S1_at	B	B1S	POPTR_0001s22140	POPTR_0001s22140 (8:547)	NA	NA	P35601	Replication factor C subunit 1	AT5G22010.1	replication factor C1 	LOC_Os03g15580.1	"AT hook motif family protein, expressed"	Medtr1g037360.1	"nucleoside-triphosphatase/ nucleotide binding, related "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
PtpAffx.145182.1.S1_at	B	B1S	POPTR_0008s05500	POPTR_0008s05500 (0:9)	NA	NA	Q9LHA8	Heat shock cognate 70 kDa protein 4	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145202.1.A1_at	B	B1S	POPTR_0004s06600	POPTR_0004s06600 (6:250)	NA	NA	NA	NA	AT1G73390.3	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os04g44530.7	expressed protein	Medtr6g088880.1	BRO1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145218.1.A1_at	B	B1S	POPTR_0011s07630	POPTR_0011s07630 (3:142)	NA	NA	P51850	Pyruvate decarboxylase isozyme 1	AT5G01320.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr2g019000.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.145287.1.A1_at	B	B1S	POPTR_0004s20800	POPTR_0004s20800 (8:502)	NA	NA	Q9SEA0	"Capsanthin/capsorubin synthase, chromoplast"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr2g107590.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.145292.1.A1_at	B	B1S	POPTR_0006s23940	POPTR_0006s23940 (8:432)	NA	NA	Q5SRE7	Phytanoyl-CoA dioxygenase domain-containing protein 1	AT2G01490.1	phytanoyl-CoA dioxygenase (PhyH) family protein 	LOC_Os05g39650.1	"phytanoyl-CoA dioxygenase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145295.1.A1_at	B	B1S	POPTR_0014s13440	POPTR_0014s13440 (7:301)	NA	NA	NA	NA	AT2G48110.1	reduced epidermal fluorescence 4 	LOC_Os07g11000.1	"structural constituent of ribosome, putative, expressed"	Medtr2g026520.1	"REF4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145296.2.A1_at	B	B1S	POPTR_0003s16240	POPTR_0003s16240 (8:1694)	NA	NA	NA	NA	AT1G28100.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os10g35644.1	expressed protein	AC235677_28.1	hypothetical protein AC235677.1 126634-128282 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145335.1.A1_at	B	B1S	POPTR_0005s27780	POPTR_0005s27780 (1:36)	scaffold_5:25277861-25278224(-) (9)	NA	NA	NA	AT2G33620.4	AT hook motif DNA-binding family protein 	LOC_Os09g31470.1	"AT hook motif domain containing protein, expressed"	Medtr6g067180.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14538.1.S1_at	B	B1S	POPTR_0002s21800	POPTR_0002s21800 (7:423)	NA	NA	O48626	Centromere/kinetochore protein zw10 homolog	AT2G32900.1	"centromere/kinetochore protein, putative (ZW10) "	LOC_Os11g34310.1	"centromere/kinetochore protein zw10, putative, expressed"	Medtr5g092190.1	Centromerekinetochore Zw10 	GO:0007067|mitosis	NA	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.14547.1.S1_at	B	B1S	POPTR_0019s01580	POPTR_0019s01580 (8:318)	NA	NA	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G63710.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g49620.5	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr4g144240.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.14551.1.S1_at	B	B1S	POPTR_0006s08060	POPTR_0006s08060 (6:873)	NA	NA	NA	NA	AT5G58100.1	unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g26984.1	expressed protein	Medtr5g019420.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145522.1.S1_at	B	B1S	POPTR_0004s19940	POPTR_0004s19940 (7:355)	NA	NA	Q3E7D0	Nucleobase-ascorbate transporter 12	AT2G27810.1	nucleobase-ascorbate transporter 12 	LOC_Os01g63870.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr4g073310.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.145558.1.S1_x_at	B	B1S	POPTR_0019s07620	POPTR_0019s07620 (6:489)	NA	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.145571.1.S1_at	B	B2S	POPTR_0002s16620	POPTR_0014s08630 (6:1149)//POPTR_0002s16620 (6:985)	NA	NA	P46547	Proline iminopeptidase	AT3G61540.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g06820.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g088900.1	"Proline iminopeptidase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145596.1.S1_s_at	B	B1S	POPTR_0008s06960	POPTR_0008s06960 (8:350)	NA	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.145748.1.S1_at	B	B1S	POPTR_0013s02060	POPTR_0013s02060 (2:1829)	NA	NA	Q9SXD5	Flavin-containing monooxygenase FMO GS-OX-like 3	AT1G62620.1	Flavin-binding monooxygenase family protein 	LOC_Os10g40570.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr5g012290.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14592.1.S1_at	B	B1S	POPTR_0010s25610	POPTR_0010s25610 (8:645)	NA	NA	O74452	Cell wall integrity protein scw1	AT3G21215.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g15080.1	"proline rich protein 3, putative, expressed"	Medtr4g023210.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.146.1.A1_at	B	B1S	POPTR_0003s19340	POPTR_0003s19340 (8:544)	NA	NA	Q96FV9	THO complex subunit 1	AT5G09860.1	nuclear matrix protein-related 	LOC_Os03g01970.1	"THO complex subunit 1, putative, expressed"	Medtr3g005340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146120.1.S1_at	B	B1S	POPTR_0015s10050	POPTR_0015s10050 (7:1181)	NA	NA	Q5RJC5	Zinc finger CCCH domain-containing protein 67	AT5G63260.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g109990.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.146161.1.S1_at	B	B2S	POPTR_0011s11890	POPTR_0011s11890 (8:6334)//POPTR_0001s40960 (2:4740)	scaffold_11:14659120-14665441(-) (9)	NA	NA	NA	AT5G53860.1	embryo defective 2737 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146165.1.S1_at	B	B1S	POPTR_0007s03760	POPTR_0007s03760 (5:1018)	NA	NA	Q74BW2	Uridylate kinase	AT3G18680.1	Amino acid kinase family protein 	LOC_Os01g73450.1	"amino acid kinase, putative, expressed"	Medtr4g142340.1	Aspartate/glutamate/uridylate kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146175.1.S1_at	B	B1S	POPTR_0006s28990	POPTR_0006s28990 (0:14)	scaffold_6:26492279-26492361(-) (10)	NA	Q03194	Plasma membrane ATPase 4	AT2G24520.1	H(+)-ATPase 5 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.146191.1.S1_at	B	B1S	POPTR_0006s06090	POPTR_0006s06090 (6:355)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146215.1.S1_at	B	B1S	POPTR_0002s10360	POPTR_0002s10360 (5:376)	scaffold_2:7447439-7447962(-) (9)	NA	NA	NA	AT5G50011.1	conserved peptide upstream open reading frame 37 	NA	NA	Medtr5g074760.1	"CPuORF37, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14624.2.S1_at	B	B1S	POPTR_0016s14580	POPTR_0016s14580 (0:1095)	NA	NA	Q94F47	Ubiquitin-conjugating enzyme E2 28	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.146249.1.S1_at	B	B1S	POPTR_0013s00760	POPTR_0013s00760 (5:137)	NA	NA	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.146408.1.A1_at	B	B1S	POPTR_0012s06650	POPTR_0012s06650 (0:409)	NA	NA	Q9LEZ3	Transcription factor BIM1	AT5G08130.4	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.14645.1.S1_at	B	B1S	POPTR_0005s07290	POPTR_0005s07290 (3:352)	NA	NA	P46668	Homeobox-leucine zipper protein ATHB-6	AT2G22430.1	homeobox protein 6 	LOC_Os09g29460.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g102220.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.146470.1.A1_at	B	B1S	POPTR_0018s13590	POPTR_0018s13590 (8:346)	scaffold_18:13865329-13865867(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146541.1.A1_at	B	B1S	POPTR_0002s26640	POPTR_0002s26640 (0:13)	scaffold_2:23529508-23529639(+) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.146569.1.A1_at	B	B1S	POPTR_0006s19730	POPTR_0006s19730 (7:261)	NA	NA	Q8GXU8	"1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic"	AT4G30580.1	Phospholipid/glycerol acyltransferase family protein 	LOC_Os10g35390.1	"acyltransferase, putative, expressed"	Medtr5g046470.1	1-acyl-sn-glycerol-3-phosphate acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.1466.1.S1_at	B	B1S	POPTR_0006s28150	POPTR_0006s28150 (6:608)	scaffold_6:25952191-25952928(+) (11)	NA	Q5R7X2	U2-associated protein SR140	AT5G25060.1	RNA recognition motif (RRM)-containing protein 	LOC_Os02g08360.1	"RNA recognition motif, putative, expressed"	Medtr8g083970.1	"SWAP/Surp; DNA-binding SAP; Regulation of nuclear pre-mRNA protein; ENTH/VHS; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.146622.1.A1_at	B	B1S	POPTR_0004s19620	POPTR_0004s19620 (4:271)	scaffold_4:19407603-19408007(-) (10)	NA	O81117	Cytochrome P450 94A1	AT2G27690.1	"cytochrome P450, family 94, subfamily C, polypeptide 1 "	LOC_Os05g37250.1	"cytochrome P450, putative, expressed"	Medtr4g072990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.14663.1.S1_at	B	B1S	POPTR_0014s16050	POPTR_0014s16050 (1:259)	NA	NA	NA	NA	AT5G35732.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g064950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146638.1.A1_at	B	B1S	POPTR_0011s11340	POPTR_0011s11340 (2:188)	scaffold_11:14060435-14060735(-) (9)	NA	Q9MAH4	ABC transporter G family member 10	AT1G53270.1	ABC-2 type transporter family protein 	LOC_Os01g42900.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr4g142950.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.146678.1.A1_at	B	B1S	POPTR_0003s02200	POPTR_0003s02200 (0:254)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146698.1.A1_at	B	B1S	POPTR_0017s13430	POPTR_0017s13430 (7:226)	NA	NA	P39598	Uncharacterized protein ywbO	AT5G38900.1	Thioredoxin superfamily protein 	NA	NA	Medtr7g014900.2	DSBA oxidoreductase; Thioredoxin-like fold 	NA	GO:0015035|protein disulfide oxidoreductase activity	GO:0030288|outer membrane-bounded periplasmic space
PtpAffx.14671.1.S1_at	B	B1S	POPTR_0014s02430	POPTR_0014s02430 (2:168)	NA	NA	Q8W3M4	Uncharacterized protein At4g06744	AT4G06744.1	Leucine-rich repeat (LRR) family protein 	LOC_Os04g57430.1	"uncharacterized protein At4g06744 precursor, putative"	Medtr1g023960.1	"Uncharacterized protein At4g06744 precursor, putative "	NA	GO:0005515|protein binding	NA
PtpAffx.146740.1.A1_at	B	B1S	POPTR_0004s20900	POPTR_0004s20900 (8:1163)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146746.1.A1_at	B	B1S	POPTR_0012s08900	POPTR_0012s08900 (5:565)	NA	NA	Q84JS6	Homeobox protein knotted-1-like 6	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.146766.1.A1_at	B	B1S	POPTR_0015s03700	POPTR_0015s03700 (0:19)	scaffold_15:3535409-3535729(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT3G18400.1	NAC domain containing protein 58 	LOC_Os03g42630.1	"No apical meristem protein, putative, expressed"	Medtr6g028410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.146785.1.A1_at	B	B1S	POPTR_0002s06020	POPTR_0002s06020 (6:188)	NA	NA	NA	NA	AT1G29350.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os01g47430.2	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr4g136700.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146875.1.A1_at	B	B1S	POPTR_0013s12530	POPTR_0013s12530 (5:324)	NA	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os02g27070.2	"PPR repeat domain containing protein, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146877.1.S1_at	B	B1S	POPTR_0005s26630	POPTR_0005s26630 (7:1090)	scaffold_5:24560289-24562092(-) (11)	NA	Q8GT74	NEP1-interacting protein 2	AT5G66070.2	RING/U-box superfamily protein 	NA	NA	Medtr5g022920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146878.3.A1_at	B	B1S	POPTR_0002s23110	POPTR_0002s23110 (0:350)	NA	NA	NA	NA	AT1G65070.1	"DNA mismatch repair protein MutS, type 2 "	LOC_Os04g58410.3	"smr domain containing protein, expressed"	AC233659_25.1	"DNA mismatch repair MutS family protein, related AC233659.1 105343-104826 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146951.1.A1_at	B	B1S	POPTR_0018s01000	POPTR_0018s01000 (2:541)	scaffold_18:914779-915920(-) (11)	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT5G25560.3	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os10g31850.1	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr3g135900.2	"Zinc finger, RING-type; Zinc finger, CHY-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146965.2.A1_at	B	B1S	POPTR_0006s28150	POPTR_0006s28150 (8:1207)	scaffold_6:25945788-25947486(+) (11)	NA	Q5R7X2	U2-associated protein SR140	AT5G25060.1	RNA recognition motif (RRM)-containing protein 	LOC_Os02g08360.1	"RNA recognition motif, putative, expressed"	Medtr8g083970.1	"SWAP/Surp; DNA-binding SAP; Regulation of nuclear pre-mRNA protein; ENTH/VHS; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.146986.1.A1_at	B	B1S	POPTR_0004s04170	POPTR_0004s04170 (0:6)	scaffold_4:2993775-2994125(-) (11)	NA	P60027	General transcription factor IIH subunit 4	AT4G17020.1	transcription factor-related 	LOC_Os04g58350.1	"TFIIH basal transcription factor complex p52 subunit, putative, expressed"	Medtr3g097740.1	Transcription factor Tfb2 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0003702|RNA polymerase II transcription factor activity	GO:0005634|nucleus
PtpAffx.146989.1.A1_at	B	B1S	POPTR_0002s00890	POPTR_0002s00890 (1:1718)	scaffold_2:416176-417019(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14707.1.A1_at	B	B1S	POPTR_0006s08650	POPTR_0006s08650 (8:1284)	NA	NA	Q6GMF8	Rhomboid family member 1	AT2G29050.1	RHOMBOID-like 1 	LOC_Os11g47840.1	"OsRhmbd18 - Putative Rhomboid homologue, expressed"	Medtr2g116690.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
PtpAffx.147090.1.A1_at	B	B1S	POPTR_0012s03510	POPTR_0012s03510 (7:294)	NA	NA	Q7GCL7	NAC domain-containing protein 74	AT3G17730.1	NAC domain containing protein 57 	LOC_Os09g38000.1	"no apical meristem protein, putative"	Medtr3g086750.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.147166.1.A1_at	B	B1S	POPTR_0005s10190	POPTR_0005s10190 (1:28)	scaffold_5:7277668-7278117(-) (11)	NA	Q9LM69	RING-H2 finger protein ATL80	AT1G20823.1	RING/U-box superfamily protein 	LOC_Os02g46100.1	"RING-H2 finger protein, putative, expressed"	Medtr5g024680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147188.1.A1_at	B	B1S	POPTR_0016s09010	POPTR_0016s09010 (5:201)	NA	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147195.1.A1_at	B	B1S	POPTR_0015s00950	POPTR_0015s00950 (2:298)	NA	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.147203.1.A1_at	B	B1S	POPTR_0003s15300	POPTR_0003s15300 (8:314)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147246.1.A1_at	B	B2S	POPTR_0014s02320	POPTR_0014s02320 (8:636)//POPTR_0014s02330 (2:369)	scaffold_14:1975104-1979430(-) (10)	NA	NA	NA	AT3G46630.1	Protein of unknown function (DUF3223) 	LOC_Os08g21700.1	"DCL, chloroplast precursor, putative, expressed"	Medtr3g147240.1	"Protein DCL, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14737.1.A1_at	B	B1S	POPTR_0014s12480	POPTR_0014s12480 (0:119)	NA	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147453.1.A1_at	B	B1S	POPTR_0011s09580	POPTR_0011s09580 (8:322)	NA	NA	Q93Z25	Probable pectate lyase 22	AT5G63180.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147502.1.A1_at	B	B1S	POPTR_0015s13230	POPTR_0015s13230 (4:272)	scaffold_15:13270724-13273240(+) (9)	NA	Q4R6Y6	snRNA-activating protein complex subunit 3	AT1G28560.2	snRNA activating complex family protein 	LOC_Os01g68440.1	expressed protein	Medtr1g042860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147571.2.A1_s_at	B	B1S	POPTR_0021s00500	POPTR_0021s00500 (1:327)	scaffold_21:156274-156617(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.147593.1.A1_at	B	B1S	POPTR_0017s01700	POPTR_0017s01700 (5:77)	NA	NA	Q86GL4	Superoxide-generating NADPH oxidase heavy chain subunit B	AT1G01580.1	ferric reduction oxidase 2 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.147598.1.A1_at	B	B1S	POPTR_0001s36530	POPTR_0001s36530 (2:151)	scaffold_1:35162340-35162800(-) (9)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT5G46550.1	DNA-binding bromodomain-containing protein 	LOC_Os07g32420.2	"bromodomain domain containing protein, expressed"	Medtr2g021880.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147624.1.A1_at	B	B1S	POPTR_0007s13860	POPTR_0007s13860 (8:514)	NA	NA	Q6S001	Kinesin-related protein 11	AT5G66310.1	ATP binding microtubule motor family protein 	LOC_Os02g43130.1	"kinesin motor domain containing protein, expressed"	Medtr5g021580.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.147678.1.A1_at	B	B1S	POPTR_0010s21680	POPTR_0010s21680 (0:279)	NA	NA	P41891	Protein gar2	AT3G55340.1	phragmoplastin interacting protein 1 	LOC_Os05g02400.1	"RNA recognition motif containing protein, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.147700.1.A1_at	B	B1S	POPTR_0001s37070	POPTR_0001s37070 (0:6)	scaffold_1:35881529-35881645(-) (11)	NA	NA	NA	AT5G55390.2	ENHANCED DOWNY MILDEW 2 	LOC_Os08g24946.1	"EDM2, putative, expressed"	Medtr8g008730.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147735.1.A1_at	B	B1S	POPTR_0001s24440	POPTR_0001s24440 (7:319)	scaffold_1:23731795-23732280(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147736.1.A1_at	B	B1A	POPTR_0012s05020	POPTR_0012s05020 (7:242)	scaffold_12:4519693-4520074(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147757.1.A1_at	B	B1S	POPTR_0007s15120	POPTR_0007s15120 (0:0)	NA	NA	Q2XWK0	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os09g38690.1	"transporter family protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.147757.1.A1_s_at	B	B1S	POPTR_0007s15120	POPTR_0007s15120 (8:316)	scaffold_7:14763754-14765253(+) (11)	NA	Q2XWK0	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os09g38690.1	"transporter family protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.14782.1.A1_s_at	B	B1S	POPTR_0006s22770	POPTR_0006s22770 (8:1707)	scaffold_6:21682219-21683996(+) (11)	NA	O82221	Probable small nuclear ribonucleoprotein G	AT3G11500.1	Small nuclear ribonucleoprotein family protein 	LOC_Os03g29740.1	"LSM domain containing protein, expressed"	Medtr7g127710.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14782.2.S1_at	B	B1S	POPTR_0016s07880	POPTR_0016s07880 (2:245)	NA	NA	O82221	Probable small nuclear ribonucleoprotein G	AT3G11500.1	Small nuclear ribonucleoprotein family protein 	LOC_Os03g29740.1	"LSM domain containing protein, expressed"	Medtr7g127710.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147823.1.A1_at	B	B1S	POPTR_0018s09560	POPTR_0018s09560 (6:541)	NA	NA	Q42525	Hexokinase-1	AT4G29130.1	hexokinase 1 	LOC_Os05g45590.1	"hexokinase, putative, expressed"	Medtr4g159960.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.147823.2.A1_at	B	B1S	POPTR_0018s09560	POPTR_0018s09560 (3:373)	NA	NA	Q42525	Hexokinase-1	AT4G29130.1	hexokinase 1 	LOC_Os05g45590.1	"hexokinase, putative, expressed"	Medtr4g159960.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.147898.1.S1_at	B	B1S	POPTR_0010s05530	POPTR_0010s05530 (8:105)	NA	NA	Q54MJ7	"Probable alanine aminotransferase, mitochondrial"	AT1G70580.4	alanine-2-oxoglutarate aminotransferase 2 	LOC_Os07g01760.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g034580.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.147944.1.S1_at	B	B2S	POPTR_0683s00200	POPTR_0683s00200 (3:544)//POPTR_0010s09840 (0:326)	NA	NA	A6LL96	5'-nucleotidase surE	AT4G14930.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os07g10460.2	"5-nucleotidase surE, putative, expressed"	Medtr1g132450.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.147969.1.S1_at	B	B1S	POPTR_0005s08230	POPTR_0005s08230 (3:44)	scaffold_5:5669982-5670616(+) (11)	NA	Q9JIX8	Apoptotic chromatin condensation inducer in the nucleus	AT4G39680.2	SAP domain-containing protein 	LOC_Os03g26630.2	"SAP domain containing protein, expressed"	Medtr3g101020.1	Borrelia outer surface lipoprotein; DNA-binding SAP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.148.1.S1_at	B	B1S	POPTR_0006s01900	POPTR_0006s01900 (6:717)	NA	NA	NA	NA	AT4G17220.1	microtubule-associated proteins 70-5 	LOC_Os02g50320.2	"ATMAP70 protein, putative, expressed"	Medtr8g148820.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148001.1.S1_at	B	B1S	POPTR_0001s28500	POPTR_0001s28500 (8:738)	scaffold_1:27256011-27256865(-) (11)	NA	P49078	Asparagine synthetase [glutamine-hydrolyzing]	AT3G47340.1	glutamine-dependent asparagine synthase 1 	LOC_Os06g15420.1	"asparagine synthetase, putative, expressed"	Medtr5g079660.1	Asparagine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006529|asparagine biosynthetic process	GO:0004066|asparagine synthase (glutamine-hydrolyzing) activity	NA
PtpAffx.148070.1.S1_at	B	B1S	POPTR_0002s14200	POPTR_0002s14200 (8:849)	scaffold_2:10519906-10520983(+) (9)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os02g43930.1	"chaperone protein dnaJ, putative, expressed"	Medtr8g006170.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.148161.1.S1_at	B	B1S	POPTR_0006s11620	POPTR_0006s11620 (3:198)	NA	NA	Q08047	"1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic"	AT5G03650.1	starch branching enzyme 2.2 	LOC_Os02g32660.1	"1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed"	Medtr7g126840.1	"Alpha amylase, C-terminal all-beta; "	GO:0005975|carbohydrate metabolic process	GO:0043169|cation binding||GO:0003824|catalytic activity	NA
PtpAffx.148325.1.S1_at	B	B1S	POPTR_0008s00700	POPTR_0008s00700 (8:1130)	NA	NA	NA	NA	AT1G51560.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os08g40570.1	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.148439.1.S1_at	B	B1S	POPTR_0010s22780	POPTR_0010s22780 (6:454)	NA	NA	Q55680	Uncharacterized protein sll0005	AT2G39190.2	Protein kinase superfamily protein 	LOC_Os02g56200.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr1g121400.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148480.1.S1_at	B	B1S	POPTR_0017s08570	POPTR_0017s08570 (8:60)	NA	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT4G13850.3	glycine-rich RNA-binding protein 2 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g105170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1486.3.S1_at	B	B1S	POPTR_0006s19750	POPTR_0006s19750 (5:580)	NA	NA	Q8W4A5	"APO protein 2, chloroplastic"	AT5G57930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os02g50010.1	"APO, putative, expressed"	Medtr2g104000.1	"Protein of unknown function DUF794, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148620.1.S1_at	B	B1S	POPTR_0009s04880	POPTR_0009s04880 (7:309)	NA	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148730.1.S1_at	B	B1S	POPTR_0006s23300	POPTR_0006s23300 (8:420)	NA	NA	NA	NA	AT4G33140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os06g09320.2	expressed protein	Medtr8g133390.1	"tac7077, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148749.1.S1_at	B	B1S	POPTR_0005s12610	POPTR_0005s12610 (4:275)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148750.1.S1_at	B	B1S	POPTR_0008s22730	POPTR_0008s22730 (8:184)	NA	NA	Q6NPN3	Zinc finger CCCH domain-containing protein 58	AT5G18550.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g15460.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr2g024920.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.148760.1.S1_at	B	B1S	POPTR_0018s11090	POPTR_0018s11090 (2:307)	NA	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os02g08270.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148778.1.S1_at	B	B2S	POPTR_0010s07150	POPTR_0010s07150 (7:734)//POPTR_0010s07210 (6:730)	NA	NA	Q03662	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148796.1.S1_at	B	B1S	POPTR_0009s06460	POPTR_0009s06460 (6:346)	NA	NA	Q9UMN6	Histone-lysine N-methyltransferase MLL4	AT3G08020.1	PHD finger family protein 	LOC_Os12g34330.1	"protein binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148810.1.S1_at	B	B1S	POPTR_0017s05780	POPTR_0017s05780 (7:462)	NA	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G59470.2	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g15040.2	"FAR1 family protein, expressed"	Medtr2g118350.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148813.1.S1_at	B	B1S	POPTR_0011s13610	POPTR_0011s13610 (6:434)	NA	NA	Q9H6U6	Breast carcinoma-amplified sequence 3	AT5G54730.1	homolog of yeast autophagy 18 (ATG18) F 	LOC_Os01g57720.2	expressed protein	Medtr2g096860.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148854.1.S1_at	B	B1S	POPTR_0011s04280	POPTR_0011s04280 (4:511)	NA	NA	Q5XII5	Telomerase Cajal body protein 1	AT4G21520.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52794.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g125120.1	"Cytochrome cd1-nitrite reductase-like, C-terminal haem d1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148948.1.A1_at	B	B1S	POPTR_0008s02740	POPTR_0008s02740 (0:92)	NA	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.148969.1.A1_at	B	B1S	POPTR_0010s18120	POPTR_0010s18120 (5:299)	NA	NA	Q9SAK4	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.149012.1.A1_at	B	B2S	POPTR_0008s13990	POPTR_0008s13990 (8:485)//POPTR_0010s11150 (6:485)	NA	NA	Q9ZPS9	Serine/threonine-protein kinase BRI1-like 2	AT2G01950.1	BRI1-like 2 	LOC_Os10g02500.1	"serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.149013.1.A1_at	B	B1S	POPTR_0010s21800	POPTR_0010s21800 (7:539)	NA	NA	Q9SFU0	Protein transport protein Sec24-like At3g07100	AT3G07100.1	Sec23/Sec24 protein transport family protein 	LOC_Os04g04020.1	"protein transport protein Sec24-like, putative, expressed"	AC235094_10.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region AC235094.1 49157-53293 E EGN_Mt090430 200"	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.149096.1.A1_at	B	B1S	POPTR_0013s04370	POPTR_0013s04370 (8:1676)	NA	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT1G08620.2	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os05g10770.1	"transcription factor jumonji, putative, expressed"	AC225479_20.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; FY-rich, C-terminal; Zinc finger, C5HC2-type AC225479.3 88241-93710 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.149103.1.A1_at	B	B1S	POPTR_0002s24310	POPTR_0002s24310 (8:117)	NA	NA	Q6ICB0	PPPDE peptidase domain-containing protein 2	AT3G07090.1	PPPDE putative thiol peptidase family protein 	LOC_Os02g56900.1	"thioredoxin family protein, putative, expressed"	Medtr7g064580.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149120.1.A1_at	B	B1S	POPTR_0014s04930	POPTR_0014s04930 (2:366)	NA	NA	O80513	Cyclin-U4-1	AT2G44740.1	cyclin p4;1 	LOC_Os10g41430.1	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149140.1.A1_at	B	B1S	POPTR_0001s06840	POPTR_0001s06840 (0:95)	NA	NA	A8K979	ERI1 exoribonuclease 2	AT3G15140.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g17279.1	"exonuclease, putative, expressed"	Medtr8g043920.1	"Prion protein-interacting protein, related "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.149149.1.A1_at	B	B1S	POPTR_0016s11690	POPTR_0016s11690 (8:129)	NA	NA	Q42896	Fructokinase-2	AT3G54090.1	fructokinase-like 1 	LOC_Os01g63220.3	"kinase, pfkB family, putative, expressed"	Medtr5g047610.1	PfkB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149230.1.S1_at	B	B1S	POPTR_0014s07480	POPTR_0014s07480 (8:527)	NA	NA	O67066	Cell division protein ftsY homolog	AT2G45770.1	"signal recognition particle receptor protein, chloroplast (FTSY) "	LOC_Os01g72800.1	"signal recognition particle receptor, putative, expressed"	Medtr8g034280.1	Cell division transporter substrate-binding protein FtsY 	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0005515|protein binding	NA
PtpAffx.149231.3.S1_at	B	B1S	POPTR_0006s13580	POPTR_0006s13580 (2:110)	NA	NA	Q8H8U5	Protein IN2-1 homolog B	AT5G02790.1	Glutathione S-transferase family protein 	LOC_Os03g17470.1	"IN2-1 protein, putative, expressed"	AC235022_17.1	Thioredoxin fold; Thioredoxin-like fold AC235022.1 105935-107691 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149273.1.S1_at	B	B1S	POPTR_0001s21660	POPTR_0001s21660 (8:558)	NA	NA	Q8LG89	Basic blue protein	AT2G02850.1	plantacyanin 	LOC_Os03g50160.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g137630.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.149319.1.S1_at	B	B1S	POPTR_0005s02470	POPTR_0005s02470 (8:1155)	NA	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099870.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
PtpAffx.149457.1.A1_at	B	B1S	POPTR_0001s07530	POPTR_0001s07530 (8:2306)	NA	NA	NA	NA	AT1G79660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16559.1	expressed protein	Medtr2g010950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149457.2.S1_s_at	B	B1S	POPTR_0003s18520	POPTR_0003s18520 (3:246)	NA	NA	NA	NA	AT1G79660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16559.1	expressed protein	Medtr2g010950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149473.1.S1_at	B	B1S	POPTR_0006s01190	POPTR_0006s01190 (8:507)	NA	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.149726.1.S1_at	B	B1S	POPTR_0005s08290	POPTR_0005s08290 (3:236)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g100970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149800.1.S1_at	B	B1S	POPTR_0002s19610	POPTR_0002s19610 (5:164)	scaffold_2:15558487-15559703(+) (9)	NA	NA	NA	AT2G47350.1	HIT zinc finger ;PAPA-1-like conserved region 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149804.2.S1_at	B	B1S	POPTR_0006s26040	POPTR_0006s26040 (7:1044)	NA	NA	NA	NA	AT5G11470.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g42460.1	"BAH domain containing protein, expressed"	Medtr3g132700.1	Bromo adjacent region 	NA	GO:0003677|DNA binding	NA
PtpAffx.149839.1.S1_at	B	B1S	POPTR_0001s28420	POPTR_0001s28420 (7:1148)	NA	NA	NA	NA	AT1G07175.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29995.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149907.1.S1_at	B	B1S	POPTR_0009s04890	POPTR_0009s04890 (8:1058)	NA	NA	P32069	"Anthranilate synthase component I-2, chloroplastic"	AT2G29690.1	anthranilate synthase 2 	LOC_Os03g61120.1	"anthranilate synthase component I-1, chloroplast precursor, putative, expressed"	Medtr1g143790.1	Anthranilate synthase component I 	GO:0009058|biosynthetic process	GO:0016833|oxo-acid-lyase activity	NA
PtpAffx.14997.1.S1_at	B	B1S	POPTR_0016s12750	POPTR_0016s12750 (0:40)	NA	NA	Q80TN4	DnaJ homolog subfamily C member 16	AT3G08970.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os03g18200.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g075620.1	"Heat shock protein DnaJ, N-terminal; Thioredoxin-like fold "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.149972.1.S1_at	B	B1S	POPTR_0015s07470	POPTR_0015s07470 (3:424)	NA	NA	Q9STT5	ABC transporter A family member 7	AT3G47780.1	ABC2 homolog 6 	LOC_Os08g30770.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g112400.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.14998.1.S1_at	B	B1S	POPTR_0004s18040	POPTR_0004s18040 (6:521)	NA	NA	NA	NA	AT2G20990.3	synaptotagmin A 	LOC_Os01g60350.1	hypothetical protein	Medtr1g031480.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150004.1.S1_at	B	B1S	POPTR_0019s10900	POPTR_0019s10900 (2:464)	NA	NA	Q9C8P8	Transcription factor bHLH80	AT1G35460.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g147140.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15002.1.S1_at	B	B1S	POPTR_0001s26030	POPTR_0001s26030 (8:403)	NA	NA	O14647	Chromodomain-helicase-DNA-binding protein 2	AT2G13370.1	chromatin remodeling 5 	LOC_Os07g46590.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g097130.1	"SNF2-related; Chromo; Helicase, C-terminal; Homeodomain-like; "	GO:0006333|chromatin assembly or disassembly	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.15003.1.S1_at	B	B1S	POPTR_0014s10180	POPTR_0014s10180 (6:450)	NA	NA	Q9ZT63	Metal tolerance protein 1	AT2G46800.2	zinc transporter of Arabidopsis thaliana 	LOC_Os05g03780.1	"cation efflux family protein, putative, expressed"	Medtr2g041270.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.15004.1.S1_at	B	B1S	POPTR_0008s07560	POPTR_0008s07560 (6:1190)	NA	NA	O22892	Uncharacterized protein At2g40430	AT2G40430.3	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tumour suppressor protein Gltscr2 (InterPro:IPR011211), P60-like (InterPro:IPR011687). "	LOC_Os05g05220.1	"glioma tumor suppressor candidate region gene 2 protein, putative, expressed"	Medtr5g091210.1	P60-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150066.1.S1_at	B	B1S	POPTR_0015s01910	POPTR_0015s01910 (6:610)	scaffold_15:1291757-1297651(-) (9)	NA	NA	NA	AT5G53450.1	OBP3-responsive gene 1 	LOC_Os01g46720.1	expressed protein	Medtr3g124180.1	"Proteinase inhibitor I4, serpin; Protein kinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150110.1.A1_at	B	B1A	POPTR_0002s05890	POPTR_0002s05890 (4:176)	scaffold_2:3891302-3891851(+) (11)	NA	Q55C58	Vacuolar protein sorting-associated protein 16 homolog	AT2G38020.1	vacuoleless1 (VCL1) 	LOC_Os01g47650.1	"vacuolar protein sorting-associated protein 16, putative, expressed"	Medtr3g061350.1	"Vps16, N-terminal "	GO:0006886|intracellular protein transport	NA	GO:0005737|cytoplasm
PtpAffx.150186.1.S1_at	B	B1S	POPTR_0011s12720	POPTR_0011s12720 (7:1834)	NA	NA	Q1ECE0	Vesicle-associated protein 4-1	AT5G54110.1	membrane-associated mannitol-induced 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.150271.1.S1_at	B	B1S	POPTR_0001s26060	POPTR_0001s26060 (8:498)	NA	NA	Q8GW61	Sugar transport protein 14	AT1G77210.2	sugar transporter 14 	LOC_Os09g15330.2	"transporter family protein, putative, expressed"	Medtr4g159350.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.150303.1.S1_s_at	B	B1S	POPTR_0018s08770	POPTR_0018s08770 (7:561)	NA	NA	O22025	Protein cfxQ homolog	AT3G24530.1	AAA-type ATPase family protein / ankyrin repeat family protein 	LOC_Os02g16660.1	"cbxX, chromosomal, putative, expressed"	Medtr5g026960.1	Ankyrin 	NA	GO:0005524|ATP binding	NA
PtpAffx.150379.1.S1_at	B	B1S	POPTR_0009s11410	POPTR_0009s11410 (8:520)	NA	NA	NA	NA	AT2G16070.2	plastid division2 	LOC_Os07g03130.1	"PDV2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150404.1.S1_at	B	B1S	POPTR_0009s01060	POPTR_0009s01060 (3:176)	NA	NA	Q8ND04	Protein SMG8	NA	NA	LOC_Os02g57780.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150443.1.S1_at	B	B1S	POPTR_0001s34240	POPTR_0001s34240 (4:855)	NA	NA	Q9LK31	Kelch repeat-containing protein At3g27220	AT3G27220.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g41020.1	"kelch repeat protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150448.1.S1_at	B	B1S	POPTR_0003s01570	POPTR_0003s01570 (5:212)	scaffold_3:1428637-1431385(-) (10)	NA	NA	NA	AT1G11400.3	partner of Y14-MAGO 	LOC_Os03g15560.1	"wibg, putative, expressed"	Medtr2g007870.1	"Exon junction complex, Pym "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150497.1.S1_at	B	B1S	POPTR_0025s00770	POPTR_0025s00770 (6:731)	NA	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT5G20260.1	Exostosin family protein 	LOC_Os02g39960.1	"exostosin family protein, putative"	Medtr8g121610.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.150517.1.A1_at	B	B1S	POPTR_0012s12820	POPTR_0012s12820 (2:121)	scaffold_12:13224440-13224693(-) (10)	NA	NA	NA	AT5G37010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65710.1); Has 6746 Blast hits to 5259 proteins in 486 species: Archae - 7; Bacteria - 485; Metazoa - 3508; Fungi - 577; Plants - 378; Viruses - 50; Other Eukaryotes - 1741 (source: NCBI BLink). 	LOC_Os04g44640.1	"ulp1 protease family, C-terminal catalytic domain containing protein, expressed"	Medtr5g084000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150555.1.S1_at	B	B1S	POPTR_0010s17010	POPTR_0010s17010 (7:937)	NA	NA	Q54DM1	Mitotic checkpoint protein bub3	AT1G69400.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g39950.1	"mitotic checkpoint protein, putative, expressed"	Medtr5g045940.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150591.1.S1_at	B	B1S	POPTR_0001s45450	POPTR_0001s45450 (7:469)	NA	NA	O65351	Subtilisin-like protease	AT4G10550.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr4g132770.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.150595.1.S1_at	B	B1S	POPTR_0009s12200	POPTR_0009s12200 (8:1062)	NA	NA	P51820	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006545|glycine biosynthetic process||GO:0006231|dTMP biosynthetic process	GO:0004799|thymidylate synthase activity||GO:0004146|dihydrofolate reductase activity	NA
PtpAffx.150596.1.S1_at	B	B1S	POPTR_0018s01290	POPTR_0018s01290 (8:2020)	NA	NA	Q8VYU4	Carbon catabolite repressor protein 4 homolog 6	AT5G11350.1	DNAse I-like superfamily protein 	LOC_Os01g42490.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr4g158510.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150604.1.S1_at	B	B1S	POPTR_0018s08230	POPTR_0018s08230 (0:466)	NA	NA	P40234	Casein kinase I homolog 2	AT2G25760.1	Protein kinase family protein 	LOC_Os01g54100.1	"CK1_CaseinKinase_1a.2 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g008170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.150622.1.S1_at	B	B1S	POPTR_0007s11170	POPTR_0007s11170 (6:1703)	NA	NA	Q0JP99	B3 domain-containing protein Os01g0234100	NA	NA	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.150630.1.S1_at	B	B1S	POPTR_0006s14480	POPTR_0006s14480 (7:1975)	NA	NA	Q9CZ15	DNA replication complex GINS protein PSF1	AT1G80190.1	partner of SLD five 1 	LOC_Os05g37980.1	"PSF1 - Putative GINS complex subunit, expressed"	Medtr3g012640.1	"GINS complex, Psf1 component "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150639.1.S1_at	B	B1S	POPTR_0006s01000	POPTR_0006s01000 (8:439)	scaffold_6:559852-560463(+) (11)	NA	Q9M1H3	ABC transporter F family member 4	AT3G54540.1	general control non-repressible 4 	LOC_Os03g32630.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g089230.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.150654.1.S1_at	B	B1S	POPTR_0001s10400	POPTR_0001s10400 (7:935)	NA	NA	NA	NA	AT4G11090.1	TRICHOME BIREFRINGENCE-LIKE 23 	LOC_Os05g12380.1	expressed protein	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150740.1.S1_at	B	B1S	POPTR_0009s00980	POPTR_0009s00980 (0:1705)	scaffold_9:1096634-1098514(+) (11)	NA	NA	NA	AT4G37608.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g10755.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150782.2.S1_at	B	B1A	POPTR_0010s02240	POPTR_0010s02240 (6:242)	NA	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G18590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os12g35350.2	"kelch repeat protein, putative, expressed"	Medtr8g139440.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150917.1.S1_at	B	B1S	POPTR_0007s04700	POPTR_0007s04700 (8:2383)	NA	NA	Q5PQN1	Probable E3 ubiquitin-protein ligase HERC4	AT5G63860.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g35570.1	"Regulator of chromosome condensation domain containing protein, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150932.1.S1_at	B	B1S	POPTR_0002s09450	POPTR_0002s09450 (8:393)	NA	NA	Q9SGZ5	Probable beta-D-xylosidase 7	AT1G78060.1	Glycosyl hydrolase family protein 	LOC_Os02g51620.1	"glycosyl hydrolase family 3 protein, putative, expressed"	CU651566_9.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal CU651566.9 51724-46198 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.150960.1.S1_at	B	B1S	POPTR_0012s14750	POPTR_0012s14750 (8:238)	NA	NA	NA	NA	AT5G44860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os01g58620.1	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151145.1.S1_s_at	B	B1S	POPTR_0018s08370	POPTR_0018s08370 (8:78)	NA	NA	Q86UW6	NEDD4-binding protein 2	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.4	"smr domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151152.1.S1_at	B	B1S	POPTR_0008s22830	POPTR_0008s22830 (7:55)	NA	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G18590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os12g35350.2	"kelch repeat protein, putative, expressed"	Medtr8g139440.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151179.1.S1_at	B	B1S	POPTR_0010s02280	POPTR_0010s02280 (8:2633)	NA	NA	Q9JK24	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	AT5G18580.1	tonneau 2 (TON2) 	LOC_Os05g05710.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed"	Medtr8g139320.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151221.1.S1_s_at	B	B1S	POPTR_0012s08120	POPTR_0012s08120 (6:253)	NA	NA	Q84WP5	UPF0497 membrane protein At2g36330	AT2G36330.1	Uncharacterised protein family (UPF0497) 	LOC_Os01g47200.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g113600.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.151332.1.S1_at	B	B1S	POPTR_0022s00770	POPTR_0022s00770 (8:435)	scaffold_19:3862293-3862728(-) (9)	NA	Q93W20	"NifU-like protein 2, chloroplastic"	AT5G49940.1	NIFU-like protein 2 	LOC_Os11g07916.1	"nifU, putative, expressed"	Medtr2g005660.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.151366.1.S1_at	B	B1S	POPTR_0011s09370	POPTR_0011s09370 (7:441)	NA	NA	Q42093	ABC transporter C family member 2	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.151433.1.S1_at	B	B1S	POPTR_0001s35680	POPTR_0001s35680 (8:1512)	NA	NA	O48963	Phototropin-1	AT3G45780.2	phototropin 1 	LOC_Os12g01140.1	"AGC_PVPK_like_kin82y.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15157.2.S1_at	B	B1S	POPTR_0012s01120	POPTR_0012s01120 (8:102)	NA	NA	Q38953	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G26560.1	"ATP-dependent RNA helicase, putative "	LOC_Os02g19860.1	"pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed"	Medtr1g143710.1	"Helicase, C-terminal; ATP-dependent helicase HrpB; Nucleic acid-binding, OB-fold, subgroup; "	NA	GO:0003723|RNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.151586.1.A1_at	B	B1S	POPTR_0012s07370	POPTR_0012s07370 (0:227)	NA	NA	NA	NA	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151598.1.A1_at	B	B1S	POPTR_0012s06670	POPTR_0012s06670 (6:287)	NA	NA	O13046	WD repeat and HMG-box DNA-binding protein 1	AT3G42660.1	transducin family protein / WD-40 repeat family protein 	LOC_Os09g06560.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g074310.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151600.1.A1_at	B	B1S	POPTR_0002s15910	POPTR_0002s15910 (0:140)	NA	NA	P80074	Myb-related protein Pp1 (Fragment)	AT3G61250.1	myb domain protein 17 	LOC_Os08g33660.1	"MYB family transcription factor, putative, expressed"	Medtr6g031320.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151629.1.A1_at	B	B1S	POPTR_0001s39250	POPTR_0001s39250 (5:358)	NA	NA	Q9NPC3	E3 ubiquitin-protein ligase CCNB1IP1	AT1G53490.1	RING/U-box superfamily protein 	LOC_Os02g13810.1	"DNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15166.1.S1_at	B	B1S	POPTR_0012s06650	POPTR_0012s06650 (8:1517)	NA	NA	Q9LEZ3	Transcription factor BIM1	AT5G08130.4	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.151670.1.A1_at	B	B1S	POPTR_0011s17180	POPTR_0011s17180 (7:452)	NA	NA	Q9LTT3	High mobility group B protein 10	AT3G13350.1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain 	LOC_Os02g27060.1	"high mobility group, putative, expressed"	Medtr1g146490.1	HMG1/2 (high mobility group) box; AT-rich interaction region 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.151672.1.A1_at	B	B1S	POPTR_0007s01590	POPTR_0007s01590 (6:153)	NA	NA	NA	NA	AT3G07565.1	Protein of unknown function (DUF3755) 	LOC_Os05g24000.2	expressed protein	Medtr3g025420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151676.1.A1_at	B	B1S	POPTR_0009s11270	POPTR_0009s11270 (1:196)	NA	NA	P90648	Myosin heavy chain kinase B	AT3G18950.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52870.1	"WD-40 repeat family protein, putative, expressed"	Medtr4g093020.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151824.1.A1_at	B	B1S	POPTR_0009s02891	POPTR_0009s02891 (4:112)	NA	NA	Q8GX29	F-box/kelch-repeat protein SKIP25	AT1G31350.1	KAR-UP F-box 1 	LOC_Os06g49750.1	"kelch motif family protein, expressed"	Medtr5g026710.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151826.1.A1_at	B	B1S	POPTR_0001s03600	POPTR_0001s03600 (8:898)	scaffold_1:2868020-2868918(-) (9)	NA	NA	NA	AT1G15980.1	NDH-dependent cyclic electron flow 1 	LOC_Os08g17390.1	expressed protein	Medtr4g022040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151837.1.A1_at	B	B4S	POPTR_0202s00220	POPTR_0202s00220 (8:297)//POPTR_2250s00200 (7:92)//POPTR_1581s00200 (4:82)//POPTR_0017s02530 (4:63)	scaffold_17:1834201-1843828(+) (10)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.151849.1.A1_at	B	B1S	POPTR_0001s37470	POPTR_0001s37470 (6:203)	NA	NA	NA	NA	AT5G55610.1	"unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os12g31490.1	expressed protein	Medtr4g129710.1	"receptor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151850.1.A1_at	B	B1S	POPTR_0007s03230	POPTR_0007s03230 (7:357)	scaffold_7:1847521-1847891(+) (10)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.151934.1.A1_at	B	B1S	POPTR_0014s03400	POPTR_0014s03400 (7:383)	NA	NA	O48721	"Uroporphyrinogen-III synthase, chloroplastic"	AT2G26540.1	uroporphyrinogen-III synthase family protein 	LOC_Os03g08730.1	"uroporphyrinogen III synthase, putative, expressed"	Medtr3g148200.1	Uroporphyrinogen III synthase HEM4 	GO:0033014|tetrapyrrole biosynthetic process	GO:0004852|uroporphyrinogen-III synthase activity	NA
PtpAffx.151956.1.A1_at	B	B2S	POPTR_0003s18000	POPTR_0003s18000 (6:408)//POPTR_0003s18020 (0:219)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50170.1	Plant protein of unknown function (DUF247) 	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151957.1.A1_at	B	B2S	POPTR_0017s01820	POPTR_0017s01820 (5:383)//POPTR_0017s01800 (4:324)	NA	NA	Q54GU0	Putative transporter arsB	AT1G02260.1	Divalent ion symporter 	LOC_Os03g05390.6	"Citrate transporter protein, putative, expressed"	Medtr8g039530.1	Citrate transporter 	GO:0015746|citrate transport	GO:0015137|citrate transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.152061.1.S1_at	B	B2S	POPTR_0013s05340	POPTR_0013s05340 (7:1110)//POPTR_0019s05160 (0:1069)	NA	NA	O22349	Tubulin alpha-3 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.152119.1.S1_at	B	B1S	POPTR_0014s11540	POPTR_0014s11540 (5:185)	NA	NA	NA	NA	AT2G16760.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g19452.1	"SMP-30/Gluconolaconase/LRE domain protein, putative, expressed"	Medtr1g106660.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15213.1.S1_at	B	B1S	POPTR_0009s03920	POPTR_0009s03920 (8:316)	scaffold_9:4516345-4516803(+) (10)	NA	NA	NA	AT5G59510.1	ROTUNDIFOLIA like 5 	NA	NA	Medtr2g117080.1	DVL 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152157.1.S1_at	B	B1S	POPTR_0006s06560	POPTR_0006s06560 (8:547)	NA	NA	Q02527	"Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase"	AT2G13290.2	"beta-1,4-N-acetylglucosaminyltransferase family protein "	LOC_Os12g41780.2	"glycosyl transferase family 17 protein, putative, expressed"	Medtr8g121170.1	"Glycosyl transferase, family 17 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003830|""beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity"""	GO:0016020|membrane
PtpAffx.15216.1.A1_at	B	B1S	POPTR_0008s03520	POPTR_0008s03520 (8:593)	NA	NA	Q93YU5	Probable exocyst complex component 4	AT3G10380.1	subunit of exocyst complex 8 	LOC_Os08g22864.1	"sec8 exocyst complex component specific domain containing protein, expressed"	Medtr4g157600.1	Sec8 exocyst complex component specific domain 	GO:0006904|vesicle docking during exocytosis||GO:0015031|protein transport	NA	GO:0000145|exocyst
PtpAffx.152207.1.S1_at	B	B1S	POPTR_0008s13550	POPTR_0008s13550 (7:1477)	NA	NA	Q0DXS3	Probable RNA-dependent RNA polymerase 1	AT1G14790.1	RNA-dependent RNA polymerase 1 	LOC_Os02g50330.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125360.1	RNA-binding region RNP-1 (RNA recognition motif); RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152294.1.S1_at	B	B1S	POPTR_0001s02970	POPTR_0001s02970 (8:367)	NA	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152382.1.S1_at	B	B1S	POPTR_0014s15710	POPTR_0014s15710 (4:81)	NA	NA	Q9MB94	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.152394.1.S1_at	B	B1S	POPTR_0001s12150	POPTR_0001s12150 (4:1425)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152419.1.S1_at	B	B1S	POPTR_0002s24440	POPTR_0002s24440 (7:253)	NA	NA	NA	NA	AT4G13630.2	"Protein of unknown function, DUF593 "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152465.1.S1_at	B	B1S	POPTR_0019s04990	POPTR_0019s04990 (8:31)	NA	NA	Q0VCZ3	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g53670.1	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152546.1.S1_at	B	B1S	POPTR_0010s13540	POPTR_0010s13540 (7:626)	NA	NA	Q9CA27	Ethylene-responsive transcription factor ERF118	AT1G68550.2	Integrase-type DNA-binding superfamily protein 	LOC_Os09g13940.4	"AP2 domain containing protein, expressed"	AC233660_41.1	Pathogenesis-related transcriptional factor and ERF AC233660.2 151624-147758 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.152557.1.S1_at	B	B1S	POPTR_0010s14130	POPTR_0010s14130 (7:2347)	NA	NA	Q8ND56	Protein LSM14 homolog A	AT1G26110.1	decapping 5 	LOC_Os06g30060.2	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152582.1.S1_at	B	B1S	POPTR_0008s22950	POPTR_0008s22950 (8:589)	NA	NA	Q8LG10	GATA transcription factor 15	AT3G06740.1	GATA transcription factor 15 	LOC_Os03g61570.2	expressed protein	Medtr7g138200.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.152658.1.S1_at	B	B1S	POPTR_0005s21250	POPTR_0005s21250 (8:1619)	NA	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os12g06670.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.152723.1.S1_at	B	B1S	POPTR_0016s04150	POPTR_0016s04150 (8:1220)	NA	NA	P45951	Apurinic endonuclease-redox protein	AT2G41460.1	apurinic endonuclease-redox protein 	LOC_Os01g58680.1	"apurinic endonuclease-redox protein, putative, expressed"	AC235753_14.2	N-6 Adenine-specific DNA methylase; Exodeoxyribonuclease III xth AC235753.1 83675-77442 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.152740.2.A1_at	B	B1S	POPTR_0013s04210	POPTR_0013s04210 (0:125)	NA	NA	NA	NA	AT3G04550.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	LOC_Os10g30870.1	expressed protein	Medtr1g093440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152798.1.S1_at	B	B1S	POPTR_0007s02640	POPTR_0007s02640 (7:382)	NA	NA	Q9LJ45	Cyclin-U1-1	AT3G21870.1	cyclin p2;1 	LOC_Os04g53680.1	"cyclin, putative, expressed"	Medtr2g103640.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15280.1.S1_at	B	B1S	POPTR_0010s22150	POPTR_0010s22150 (7:405)	NA	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os05g07890.1	"embryo-specific 3, putative, expressed"	Medtr7g067590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152801.1.S1_at	B	B1S	POPTR_0012s05730	POPTR_0012s05730 (8:857)	NA	NA	Q8GXJ1	Histone deacetylase 15	AT3G18520.2	histone deacetylase 15 	LOC_Os07g06980.1	"histone deacetylase, putative, expressed"	Medtr2g105140.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152948.1.A1_at	B	B1S	POPTR_0004s14510	POPTR_0004s14510 (6:532)	NA	NA	P81393	Myb-related protein 308	AT4G38620.1	myb domain protein 4 	LOC_Os05g35500.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153010.1.A1_at	B	B1S	POPTR_0018s07390	POPTR_0018s07390 (6:414)	scaffold_18:7643255-7643894(-) (10)	NA	P33081	Auxin-induced protein 15A	AT5G20810.1	SAUR-like auxin-responsive protein family  	LOC_Os09g26610.1	"OsSAUR38 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g133050.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153090.1.S1_at	B	B1S	POPTR_0014s16430	POPTR_0014s16430 (7:570)	scaffold_14:12508457-12509104(+) (11)	NA	Q75LL6	Transcriptional adapter ADA2	AT3G07740.4	homolog of yeast ADA2 2A 	LOC_Os03g53960.2	"transcriptional adaptor, putative, expressed"	Medtr3g106530.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; SWIRM; Homeodomain-related "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.153093.1.A1_at	B	B1S	POPTR_0001s46650	POPTR_0001s46650 (6:328)	scaffold_1:47028491-47029010(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.153098.1.A1_at	B	B1S	POPTR_0012s04140	POPTR_0012s04140 (5:575)	NA	NA	Q9LE73	Nudix hydrolase 4	AT1G18300.1	nudix hydrolase homolog 4 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr6g080940.2	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.153104.1.A1_at	B	B1S	POPTR_0005s16930	POPTR_0005s16930 (2:175)	NA	NA	Q9LM18	F-box protein At1g22220	AT1G22220.1	F-box family protein 	LOC_Os05g41130.1	"OsFBX168 - F-box domain containing protein, expressed"	Medtr4g031470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153114.1.A1_at	B	B1S	POPTR_0004s24360	POPTR_0004s24360 (8:397)	NA	NA	Q949P1	Abscisic acid 8'-hydroxylase 1	AT4G19230.1	"cytochrome P450, family 707, subfamily A, polypeptide 1 "	LOC_Os02g47470.1	"cytochrome P450, putative, expressed"	Medtr5g025670.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.153129.1.A1_at	B	B1S	POPTR_0012s05790	POPTR_0012s05790 (6:452)	scaffold_12:5609562-5610221(-) (10)	NA	Q9LQU4	Uncharacterized protein At1g14870	AT1G49030.1	PLAC8 family protein 	LOC_Os02g36950.2	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g129520.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153186.1.A1_at	B	B1S	POPTR_0005s23330	POPTR_0005s23330 (3:151)	scaffold_5:22146953-22147453(-) (10)	NA	Q9M1W7	F-box/kelch-repeat protein SKIP30	AT3G63220.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153186.2.A1_at	B	B1S	POPTR_0002s05150	POPTR_0002s05150 (4:152)	scaffold_2:3337464-3337874(+) (10)	NA	Q9M1W7	F-box/kelch-repeat protein SKIP30	AT3G63220.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153190.1.A1_at	B	B1S	POPTR_0001s34270	POPTR_0001s34270 (1:24)	NA	NA	P72854	Sulfite reductase [ferredoxin]	AT5G04590.1	sulfite reductase 	LOC_Os05g42350.1	"ferredoxin--nitrite reductase, putative, expressed"	Medtr4g129810.1	Ferredoxin-nitrite reductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0051536|iron-sulfur cluster binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.153198.1.A1_at	B	B1S	POPTR_0006s24090	POPTR_0006s24090 (5:223)	NA	NA	Q11011	Puromycin-sensitive aminopeptidase	AT4G33090.1	aminopeptidase M1 	LOC_Os02g12650.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.153299.1.A1_at	B	B1S	POPTR_0001s33280	POPTR_0001s33280 (6:154)	NA	NA	NA	NA	AT5G41070.1	dsRNA-binding protein 5 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.153311.2.S1_at	B	B1S	POPTR_0002s26430	POPTR_0002s26430 (8:263)	NA	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.153331.1.A1_at	B	B1S	POPTR_0003s02110	POPTR_0003s02110 (5:171)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.153348.1.A1_at	B	B1S	POPTR_0005s01880	POPTR_0005s01880 (3:219)	scaffold_5:1238528-1239010(+) (10)	NA	Q7XA65	RNA pseudourine synthase 1	AT1G56345.1	Pseudouridine synthase family protein 	LOC_Os12g37380.1	"RNA pseudouridine synthase, putative, expressed"	Medtr1g100510.1	"Pseudouridine synthase, Rlu; Peptidase S16, lon C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153434.2.A1_at	B	B1S	POPTR_0014s16670	POPTR_0014s16670 (3:303)	NA	NA	Q8S4Y1	"Acetyl-CoA acetyltransferase, cytosolic 1"	AT5G48230.2	acetoacetyl-CoA thiolase 2 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	Medtr5g106000.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153458.2.A1_at	B	B1S	POPTR_0010s04580	POPTR_0010s04580 (7:358)	NA	NA	Q39264	Zinc finger protein 5	AT1G10480.1	zinc finger protein 5 	LOC_Os01g32920.1	"ZOS1-08 - C2H2 zinc finger protein, expressed"	Medtr5g036910.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.153497.1.A1_at	B	B1S	POPTR_0017s00480	POPTR_0017s00480 (8:279)	scaffold_17:179046-179487(+) (11)	NA	Q9M1Y1	F-box/kelch-repeat protein SKIP20	AT3G59940.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os11g14140.1	"OsFBK25 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g134000.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153499.1.A1_at	B	B1S	POPTR_0009s06330	POPTR_0009s06330 (5:148)	scaffold_9:6117805-6118189(-) (10)	NA	Q9FNA2	Polyamine oxidase 1	AT5G13700.1	polyamine oxidase 1 	LOC_Os09g20284.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g039870.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.153528.1.A1_at	B	B1S	POPTR_0014s10670	POPTR_0014s10670 (0:9)	scaffold_14:7947192-7947228(+) (11)	NA	Q8K2Y7	"39S ribosomal protein L47, mitochondrial"	AT1G07830.1	ribosomal protein L29 family protein 	LOC_Os06g03790.1	"39S ribosomal protein L47, mitochondrial precursor, putative, expressed"	Medtr5g015940.1	Ribosomal protein L29; Alpha-helical ferredoxin; Mitochondrial 39-S ribosomal L47 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005761|mitochondrial ribosome
PtpAffx.153538.2.A1_a_at	B	B2S	POPTR_0014s14770	POPTR_0014s14770 (5:282)//POPTR_0014s14760 (3:255)	scaffold_14:10840651-10844597(+) (11)	NA	NA	NA	AT2G43110.1	unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153609.2.A1_at	B	B1S	POPTR_0015s12790	POPTR_0015s12790 (6:184)	NA	NA	Q9FEF8	rRNA 2'-O-methyltransferase fibrillarin 1	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.153622.1.A1_s_at	B	B1S	POPTR_0005s07820	POPTR_0005s07820 (8:388)	scaffold_5:5370875-5371383(-) (11)	NA	NA	NA	AT5G65170.1	VQ motif-containing protein 	LOC_Os08g31660.1	"VQ domain containing protein, putative, expressed"	Medtr3g101450.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153662.1.A1_at	B	B1S	POPTR_0017s10480	POPTR_0017s10480 (4:1012)	NA	NA	Q54GI9	"Prohibitin-1, mitochondrial"	AT5G40770.1	prohibitin 3 	LOC_Os02g37000.1	"mitochondrial prohibitin complex protein 1, putative, expressed"	Medtr3g009610.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153670.1.A1_at	B	B1S	POPTR_0002s03540	POPTR_0002s03540 (0:708)	NA	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153701.2.A1_at	B	B1S	POPTR_0005s02710	POPTR_0005s02710 (8:2096)	scaffold_5:1732726-1734822(+) (9)	NA	Q9Y4C1	Lysine-specific demethylase 3A	AT1G09060.3	"Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase "	LOC_Os03g22540.1	"jmjC domain containing protein, expressed"	Medtr1g099670.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153840.1.A1_at	B	B1S	POPTR_0002s22230	POPTR_0002s22230 (7:475)	NA	NA	NA	NA	AT2G05120.1	"Nucleoporin, Nup133/Nup155-like "	LOC_Os03g12450.1	"nucleoporin, putative, expressed"	Medtr5g104960.1	Nup133 nucleoporin 	GO:0006913|nucleocytoplasmic transport	GO:0017056|structural constituent of nuclear pore	GO:0005643|nuclear pore
PtpAffx.153855.1.A1_at	B	B1S	POPTR_0005s21780	POPTR_0005s21780 (5:327)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153910.1.A1_at	B	B1S	POPTR_0003s17170	POPTR_0003s17170 (6:179)	scaffold_3:16606629-16606980(-) (11)	NA	Q5M7C8	HORMA domain-containing protein 1	AT1G67370.1	DNA-binding HORMA family protein 	LOC_Os09g32930.3	"retrotransposon protein, putative, SINE subclass, expressed"	Medtr3g103770.1	DNA-binding HORMA 	GO:0007067|mitosis	NA	NA
PtpAffx.153955.1.A1_at	B	B1S	POPTR_0001s31470	POPTR_0001s31470 (0:293)	NA	NA	P42734	Probable cinnamyl alcohol dehydrogenase 9	AT4G39330.1	cinnamyl alcohol dehydrogenase 9 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr4g141720.1	"Alcohol dehydrogenase, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.153960.1.A1_at	B	B1S	POPTR_0015s06930	POPTR_0015s06930 (4:124)	NA	NA	P09394	Glycerophosphoryl diester phosphodiesterase	AT1G74210.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os01g55780.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr3g076710.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.153962.1.A1_at	B	B1A	POPTR_0002s12520	POPTR_0002s12520 (5:254)	scaffold_2:9301158-9301650(+) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT4G34131.1	UDP-glucosyl transferase 73B3 	LOC_Os01g41430.1	"UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153989.1.A1_at	B	B1S	POPTR_0010s06190	POPTR_0010s06190 (1:483)	NA	NA	P80470	"Photosystem II core complex proteins psbY, chloroplastic"	AT1G67740.1	photosystem II BY 	LOC_Os08g02630.1	"photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed"	Medtr3g102830.1	"Photosystem II core complex proteins psbY, chloroplast precursor, putative "	GO:0015979|photosynthesis	GO:0030145|manganese ion binding	GO:0016021|integral to membrane||GO:0009523|photosystem II
PtpAffx.153996.1.A1_at	B	B1S	POPTR_0005s09230	POPTR_0005s09230 (0:129)	NA	NA	Q9FYE2	Protein PHYTOCHROME KINASE SUBSTRATE 4	AT5G04190.1	phytochrome kinase substrate 4 	LOC_Os01g15990.1	expressed protein	Medtr7g105020.1	"phytochrome kinase substrate 1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154036.1.A1_at	B	B1S	POPTR_0006s25270	POPTR_0006s25270 (8:1122)	NA	NA	Q96SW2	Protein cereblon	AT2G25740.1	ATP-dependent protease La (LON) domain protein 	LOC_Os05g44590.3	"ATP-dependent protease La, putative, expressed"	Medtr1g008210.1	"Peptidase S16, lon N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
PtpAffx.154054.1.A1_at	B	B1S	POPTR_0001s27190	POPTR_0001s27190 (6:1611)	scaffold_1:26105174-26107186(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154075.1.A1_at	B	B1S	POPTR_0011s01540	POPTR_0011s01540 (6:126)	NA	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT4G22130.1	STRUBBELIG-receptor family 8 	LOC_Os02g09740.1	"STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.154078.1.A1_at	B	B1S	POPTR_0005s01730	POPTR_0005s01730 (8:164)	NA	NA	Q9XGI7	Nicotianamine synthase	AT1G09240.1	nicotianamine synthase 3 	LOC_Os07g48980.1	"nicotianamine synthase, putative, expressed"	Medtr1g100600.1	Nicotianamine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0030418|nicotianamine biosynthetic process||GO:0044106|cellular amine metabolic process	GO:0030410|nicotianamine synthase activity	NA
PtpAffx.154121.1.A1_at	B	B1S	POPTR_0014s17350	POPTR_0014s17350 (6:431)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154151.1.S1_at	B	B4S	POPTR_0003s02160	POPTR_0003s01960 (2:765)//POPTR_0003s02270 (3:764)//POPTR_0003s02150 (0:539)//POPTR_0003s02160 (5:212)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154154.1.A1_at	B	B1S	POPTR_0006s19950	POPTR_0006s19950 (6:414)	scaffold_6:18971385-18972021(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154184.1.A1_at	B	B1S	POPTR_0005s12710	POPTR_0005s12710 (2:192)	NA	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.15423.1.A1_at	B	B1S	POPTR_0010s11130	POPTR_0010s11130 (3:731)	NA	NA	Q9LKW9	Sodium/hydrogen exchanger 7	AT2G01980.1	"sodium proton exchanger, putative (NHX7) (SOS1) "	LOC_Os12g44360.2	"sodium/hydrogen exchanger 7, putative, expressed"	Medtr2g043140.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.154332.1.S1_at	B	B1S	POPTR_0004s22530	POPTR_0004s22530 (7:181)	NA	NA	Q9FFB3	Vacuolar protein sorting-associated protein 24 homolog 1	AT5G22950.1	SNF7 family protein 	LOC_Os03g01810.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	GO:0015031|protein transport	NA	NA
PtpAffx.154411.1.S1_at	B	B1S	POPTR_0015s05760	POPTR_0015s05760 (2:441)	NA	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g49830.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.154543.2.A1_at	B	B1S	POPTR_0004s16130	POPTR_0004s16130 (8:909)	NA	NA	P54654	Adenylyl cyclase-associated protein	AT4G34490.1	cyclase associated protein 1 	LOC_Os03g51250.1	"adenylyl cyclase-associated protein, putative, expressed"	Medtr4g095480.1	Cyclase-associated protein; 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
PtpAffx.15455.1.A1_at	B	B1S	POPTR_0003s17030	POPTR_0003s17030 (8:512)	NA	NA	NA	NA	AT5G43260.1	chaperone protein dnaJ-related 	LOC_Os02g30320.1	"drought-induced protein 1, putative, expressed"	Medtr3g103850.1	"drought-induced protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15456.1.S1_at	B	B1S	POPTR_0006s15380	POPTR_0006s15380 (5:646)	NA	NA	Q9SU94	Probable protein arginine N-methyltransferase 1.1	AT4G29510.1	arginine methyltransferase 11 	LOC_Os09g19560.1	"methyltransferase, putative, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.1546.1.S1_at	B	B1S	POPTR_0014s13510	POPTR_0014s13510 (7:702)	scaffold_14:9942877-9943731(-) (11)	NA	NA	NA	AT4G02880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03290.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g16440.1	"CUE domain containing protein, expressed"	Medtr1g086690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15485.2.S1_at	B	B1S	POPTR_0001s02910	POPTR_0001s02910 (5:340)	NA	NA	Q6LA43	Two-component response regulator-like APRR2	AT4G18020.5	CheY-like two-component responsive regulator family protein 	LOC_Os01g13740.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr5g014220.2	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.154996.1.S1_at	B	B1S	POPTR_0003s01370	POPTR_0003s01370 (7:1019)	NA	NA	Q9SAC4	F-box protein At1g10780	AT1G10780.1	F-box/RNI-like superfamily protein 	LOC_Os09g28120.1	"OsFBX330 - F-box domain containing protein, expressed"	Medtr2g007270.1	"F-box protein At1g10780, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155081.1.S1_at	B	B1S	POPTR_0008s05020	POPTR_0008s05020 (7:496)	NA	NA	Q9M3B9	ABC transporter B family member 20	AT3G55320.1	P-glycoprotein  20 	LOC_Os01g74470.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g133840.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.155148.1.S1_at	B	B1S	POPTR_0014s01660	POPTR_0014s01660 (7:540)	NA	NA	P42054	Outer plastidial membrane protein porin	AT5G67500.1	voltage dependent anion channel 2 	LOC_Os03g10510.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.155161.1.S1_at	B	B1S	POPTR_0007s03840	POPTR_0007s03840 (0:1)	scaffold_7:2262714-2263076(-) (10)	NA	Q84K00	NAC domain-containing protein 78	AT5G09330.4	NAC domain containing protein 82 	LOC_Os05g35170.2	"no apical meristem protein, putative, expressed"	Medtr3g143500.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.155168.1.S1_at	B	B1S	POPTR_0010s11090	POPTR_0010s11090 (8:830)	NA	NA	Q6NLW5	Protein XRI1	AT1G14630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 125 Blast hits to 123 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g27590.1	expressed protein	Medtr3g086880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155282.1.S1_at	B	B1S	POPTR_0001s23420	POPTR_0001s23420 (6:1278)	NA	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G44500.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr3g031560.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155350.1.S1_at	B	B1S	POPTR_0005s18520	POPTR_0005s18520 (5:1319)	NA	NA	P43297	Cysteine proteinase RD21a	AT1G47128.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.155357.1.S1_at	B	B2S	POPTR_0019s07950	POPTR_0019s07950 (6:265)//POPTR_0148s00200 (6:265)	NA	NA	NA	NA	AT5G17070.1	CONTAINS InterPro DOMAIN/s: Protein phosphatase 4 core regulatory subunit R2 (InterPro:IPR015267); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g19650.1	expressed protein	Medtr4g106910.1	"PPP4R2-related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155365.1.S1_at	B	B1S	POPTR_0008s02180	POPTR_0008s02180 (0:93)	NA	NA	NA	NA	AT3G54260.1	TRICHOME BIREFRINGENCE-LIKE 36 	LOC_Os03g18110.1	"proteins of unknown function domain containing protein, putative, expressed"	Medtr5g079650.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155448.1.A1_at	B	B1S	POPTR_0014s11370	POPTR_0014s11370 (0:401)	NA	NA	Q93XK2	Stachyose synthase	AT4G01970.1	stachyose synthase 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr4g136550.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155482.1.A1_at	B	B1S	POPTR_0005s17860	POPTR_0005s17860 (0:129)	NA	NA	P27140	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.2	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr5g075060.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.155489.1.A1_at	B	B1S	POPTR_0001s23360	POPTR_0001s23360 (0:135)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155491.1.A1_at	B	B1S	POPTR_0008s08460	POPTR_0008s08460 (0:131)	NA	NA	Q03640	Tricalbin-3	AT3G19830.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g58230.1	"C2 domain containing protein, putative, expressed"	Medtr8g112680.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155513.1.A1_at	B	B1S	POPTR_0004s06620	POPTR_0004s06620 (5:219)	NA	NA	NA	NA	AT2G31270.1	homolog of yeast CDT1 A 	LOC_Os04g10650.1	"CDT1A - Putative DNA replication initiation protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155518.1.A1_at	B	B1S	POPTR_0010s12680	POPTR_0010s12680 (0:104)	NA	NA	P17614	"ATP synthase subunit beta, mitochondrial"	AT5G08680.1	ATP synthase alpha/beta family protein 	LOC_Os01g49190.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.155568.1.A1_at	B	B1S	POPTR_0010s25930	POPTR_0010s25930 (0:272)	NA	NA	NA	NA	AT1G16840.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g13320.1	expressed protein	Medtr2g042680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155587.1.A1_at	B	B1A	POPTR_0007s12700	POPTR_0007s12700 (8:359)	NA	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	Medtr8g093530.1	Protein of unknown function DUF81 	NA	NA	GO:0016021|integral to membrane
PtpAffx.155630.1.S1_at	B	B1S	POPTR_0009s07080	POPTR_0009s07080 (4:455)	NA	NA	Q54FQ8	Translation initiation factor eIF-2B subunit gamma	AT5G19485.1	transferases;nucleotidyltransferases 	LOC_Os06g23160.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr4g133990.1	Bacterial transferase hexapeptide repeat 	NA	GO:0016740|transferase activity	NA
PtpAffx.155656.1.S1_at	B	B1S	POPTR_0017s08600	POPTR_0017s08600 (8:194)	NA	NA	Q54Z26	Serine hydroxymethyltransferase 1	AT4G13930.1	serine hydroxymethyltransferase 4 	LOC_Os12g22030.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr4g133030.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.155752.1.S1_at	B	B1S	POPTR_0004s09110	POPTR_0004s09110 (6:476)	NA	NA	Q9SXJ6	"ATP-dependent Clp protease proteolytic subunit 3, chloroplastic"	AT1G66670.1	CLP protease proteolytic subunit 3 	LOC_Os01g32350.2	"OsClp2 - Putative Clp protease homologue, expressed"	Medtr7g094170.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.155756.1.S1_at	B	B1S	POPTR_0004s21140	POPTR_0004s21140 (2:179)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156086.1.A1_at	B	B1S	POPTR_0016s12150	POPTR_0016s12150 (0:51)	NA	NA	P54769	Tyrosine/DOPA decarboxylase 2	AT2G20340.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os10g26110.1	"decarboxylase, putative, expressed"	Medtr7g117140.1	Pyridoxal-dependent decarboxylase; ; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.15626.3.S1_at	B	B1S	POPTR_0015s03970	POPTR_0015s03970 (8:333)	scaffold_15:3883612-3884252(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT1G73760.1	RING/U-box superfamily protein 	LOC_Os01g49770.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g096250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15626.4.S1_at	B	B1S	POPTR_0015s03970	POPTR_0015s03970 (4:642)	NA	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT1G73760.1	RING/U-box superfamily protein 	LOC_Os01g49770.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g096250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15631.1.A1_at	B	B1S	POPTR_0010s06780	POPTR_0010s06780 (4:382)	NA	NA	NA	NA	AT5G43230.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01810.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g39490.3	expressed protein	Medtr1g090380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156310.2.S1_at	B	B1S	POPTR_0011s01805	POPTR_0011s01805 (3:528)	NA	NA	Q9FH83	Probable WRKY transcription factor 52	AT5G45260.1	Disease resistance protein (TIR-NBS-LRR class) 	NA	NA	Medtr4g012470.1	TIR; NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156454.1.S1_at	B	B1S	POPTR_0011s06070	POPTR_0011s06070 (8:1150)	NA	NA	Q54EY1	D-tyrosyl-tRNA(Tyr) deacylase	AT4G18460.1	D-Tyr-tRNA(Tyr) deacylase family protein 	LOC_Os01g14040.1	"D-tyrosyl-tRNA, putative, expressed"	Medtr4g089580.1	D-tyrosyl-tRNA(Tyr) deacylase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044282|small molecule catabolic process||GO:0019478|D-amino acid catabolic process||GO:0044281|small molecule metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	GO:0005737|cytoplasm
PtpAffx.156588.1.S1_at	B	B1S	POPTR_0018s04770	POPTR_0018s04770 (1:1577)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g121920.2	"Glu-tRNAGln amidotransferase, C subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15659.2.S1_at	B	B1S	POPTR_0013s14100	POPTR_0013s14100 (0:452)	NA	NA	Q8H5X5	Secretory carrier-associated membrane protein 1	AT2G20840.1	Secretory carrier membrane protein (SCAMP) family protein 	LOC_Os07g37740.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
PtpAffx.156597.1.S1_s_at	B	B1S	POPTR_0003s03290	POPTR_0003s03290 (4:537)	scaffold_3:3677154-3678655(+) (11)	NA	Q944A9	Novel plant SNARE 11	AT2G35190.1	novel plant snare 11 	LOC_Os06g50120.1	"novel plant SNARE 11, putative, expressed"	Medtr8g134080.1	Target SNARE coiled-coil region; Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156685.1.S1_at	B	B1S	POPTR_0011s12960	POPTR_0011s12960 (1:171)	NA	NA	NA	NA	AT2G31670.1	Stress responsive alpha-beta barrel domain protein 	LOC_Os07g41810.4	"stress responsive A/B Barrel domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156723.1.S1_at	B	B2S	POPTR_0001s28860	POPTR_0001s28860 (7:2501)//POPTR_0001s28870 (3:1550)	scaffold_1:27633667-27639820(+) (10)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G30150.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15685.1.S1_at	B	B1S	POPTR_0005s08790	POPTR_0005s08790 (3:86)	scaffold_5:6131086-6131386(+) (10)	NA	Q10442	Uncharacterized mitochondrial carrier C12B10.09	AT4G39460.2	S-adenosylmethionine carrier 1 	LOC_Os05g29860.2	"mitochondrial carrier protein, putative, expressed"	Medtr4g141110.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15690.1.S1_at	B	B1S	POPTR_0008s02690	POPTR_0008s02690 (7:524)	NA	NA	Q9FKS8	Lysine histidine transporter 1	AT1G08230.2	Transmembrane amino acid transporter family protein 	LOC_Os01g63854.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156940.1.S1_at	B	B1S	POPTR_2535s00200	POPTR_2535s00200 (0:268)	NA	NA	Q8LPQ9	Flowering time control protein FPA	AT2G43410.4	RNA binding 	LOC_Os09g34070.2	"RNA recognition motif containing protein, expressed"	Medtr4g092490.1	RNA-binding region RNP-1 (RNA recognition motif); SPOC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156988.1.S1_at	B	B1S	POPTR_0008s20320	POPTR_0008s20320 (6:384)	NA	NA	Q7XJ53	Probable protein phosphatase 2C 35	AT3G06270.1	Protein phosphatase 2C family protein 	LOC_Os02g17970.2	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g026070.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157.1.A1_at	B	B1S	POPTR_0001s45300	POPTR_0001s45300 (7:556)	NA	NA	NA	NA	AT1G32810.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g14510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157009.1.S1_at	B	B1S	POPTR_0005s10210	POPTR_0005s10210 (8:1086)	NA	NA	O22757	MLO-like protein 8	AT2G17480.1	Seven transmembrane MLO family protein 	LOC_Os10g39520.1	"MLO domain containing protein, putative, expressed"	Medtr8g087610.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.157053.1.S1_at	B	B1S	POPTR_0001s45950	POPTR_0001s45950 (5:1119)	NA	NA	Q9BVG8	Kinesin-like protein KIFC3	AT5G65930.2	kinesin-like calmodulin-binding protein (ZWICHEL) 	LOC_Os04g57140.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g025080.1	"Band 4.1; Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4; Kinesin, motor region; Prismane-like "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	GO:0005856|cytoskeleton
PtpAffx.157089.1.S1_at	B	B2S	POPTR_0008s00590	POPTR_0008s00620 (6:808)//POPTR_0008s00590 (7:772)	scaffold_8:248646-249498(-) (9)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g134250.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157105.1.S1_at	B	B1S	POPTR_0008s08120	POPTR_0008s08120 (7:442)	NA	NA	NA	NA	AT1G79420.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157126.1.S1_at	B	B1S	POPTR_0002s14110	POPTR_0002s14110 (0:509)	NA	NA	Q76E23	Eukaryotic translation initiation factor 4G	AT3G60240.3	eukaryotic translation initiation factor 4G 	LOC_Os07g36940.2	"eukaryotic translation initiation factor 4G, putative, expressed"	Medtr8g008440.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.157185.1.S1_at	B	B1S	POPTR_0003s08670	POPTR_0003s08670 (7:1037)	scaffold_3:10072221-10073599(-) (11)	NA	Q42581	"Ribose-phosphate pyrophosphokinase 1, chloroplastic"	AT2G35390.2	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.157185.2.S1_at	B	B1S	POPTR_0001s02860	POPTR_0001s02860 (6:2073)	NA	NA	Q42581	"Ribose-phosphate pyrophosphokinase 1, chloroplastic"	AT2G35390.2	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.157226.1.S1_at	B	B1S	POPTR_0001s05540	POPTR_0001s05540 (5:477)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os11g33394.2	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157231.1.S1_at	B	B1S	POPTR_0014s06930	POPTR_0014s06930 (8:2265)	NA	NA	Q8U3Y2	Glyoxylate reductase	AT2G45630.2	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01650.1	erythronate-4-phosphate dehydrogenase domain containing protein	Medtr4g009370.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.15727.1.S1_at	B	B1S	POPTR_0012s10720	POPTR_0012s10720 (5:482)	NA	NA	NA	NA	AT3G48860.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15733.2.S1_at	B	B1S	POPTR_0001s34310	POPTR_0001s34310 (4:449)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157404.1.S1_at	B	B1S	POPTR_0007s15380	POPTR_0007s15380 (8:1252)	scaffold_7:14937750-14938954(-) (9)	NA	Q84WN0	"Uncharacterized protein At4g37920, chloroplastic"	AT4G37920.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36320.1); Has 123 Blast hits to 120 proteins in 40 species: Archae - 2; Bacteria - 11; Metazoa - 8; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os01g20110.1	expressed protein	Medtr5g032370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157464.1.S1_at	B	B1S	POPTR_0014s12920	POPTR_0014s12920 (6:825)	NA	NA	NA	NA	AT4G03180.1	CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink). 	LOC_Os12g35270.1	expressed protein	Medtr7g129860.1	rRNA processing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157467.1.S1_at	B	B1S	POPTR_0006s02850	POPTR_0006s02850 (7:796)	NA	NA	Q9SG80	Alpha-L-arabinofuranosidase 1	AT3G10740.1	alpha-L-arabinofuranosidase 1 	LOC_Os11g03730.3	"alpha-N-arabinofuranosidase A, putative, expressed"	Medtr7g105210.1	"alpha-L-arabinofuranosidase protein, putative "	GO:0044262|cellular carbohydrate metabolic process||GO:0046373|L-arabinose metabolic process||GO:0044281|small molecule metabolic process	GO:0046556|alpha-N-arabinofuranosidase activity	NA
PtpAffx.157483.1.S1_at	B	B2S	POPTR_0017s00510	POPTR_0017s00510 (5:1191)//POPTR_0007s00210 (0:812)	NA	NA	Q945S8	Histone-lysine N-methyltransferase ASHH3	AT2G44150.1	histone-lysine N-methyltransferase ASHH3 	LOC_Os09g13740.2	"SET domain containing protein, expressed"	Medtr6g070840.1	Nuclear protein SET; SET-related region; AWS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157531.1.S1_at	B	B1S	POPTR_0010s24160	POPTR_0010s24160 (6:1151)	NA	NA	Q8W571	RING-H2 finger protein ATL32	AT4G40070.1	RING/U-box superfamily protein 	LOC_Os02g45390.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157570.1.S1_at	B	B1S	POPTR_0008s20100	POPTR_0008s20100 (8:564)	NA	NA	O78328	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT4G15560.1	Deoxyxylulose-5-phosphate synthase 	LOC_Os05g33840.1	"transketolase, putative, expressed"	Medtr8g139810.1	"Transketolase, C-terminal-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.157587.1.S1_at	B	B1S	POPTR_0018s07480	POPTR_0018s07480 (3:2343)	NA	NA	A7PZL3	Probable polygalacturonase	AT1G19170.1	Pectin lyase-like superfamily protein 	LOC_Os09g26800.1	"polygalacturonase, putative, expressed"	Medtr2g050070.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.157621.1.S1_at	B	B1S	POPTR_0012s14150	POPTR_0012s14150 (8:41)	NA	NA	Q8GW72	Alpha-L-fucosidase 1	AT2G28100.1	alpha-L-fucosidase 1 	LOC_Os09g34920.1	"glycosyl hydrolase family 29, putative, expressed"	Medtr1g130150.1	"Glycoside hydrolase, family 29 (alpha-L-fucosidase) "	GO:0005975|carbohydrate metabolic process||GO:0007155|cell adhesion	GO:0004560|alpha-L-fucosidase activity	NA
PtpAffx.157692.1.S1_at	B	B1S	POPTR_0002s10500	POPTR_0002s10500 (7:377)	NA	NA	Q9SB51	Ubiquitin carboxyl-terminal hydrolase 16	AT4G24560.1	ubiquitin-specific protease 16 	LOC_Os08g37350.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr3g149210.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.157719.1.S1_at	B	B2S	POPTR_0004s20250	POPTR_0004s20270 (5:449)//POPTR_0004s20250 (8:449)	NA	NA	NA	NA	AT2G27140.1	HSP20-like chaperones superfamily protein 	LOC_Os03g45340.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr5g094550.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157751.1.S1_at	B	B1S	POPTR_0017s11320	POPTR_0017s11320 (6:350)	NA	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.157766.1.S1_at	B	B1S	POPTR_0004s14455	POPTR_0004s14455 (6:2986)	scaffold_4:15012648-15015697(+) (9)	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT5G13250.1	RING finger protein 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157767.1.S1_at	B	B1S	POPTR_0015s06920	POPTR_0015s06920 (8:274)	NA	NA	Q9SIK7	Presenilin-like protein At2g29900	AT2G29900.1	Presenilin-2 	LOC_Os01g16930.1	"presenilin, putative, expressed"	Medtr7g104070.1	"Peptidase A22A, presenilin "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	GO:0016021|integral to membrane
PtpAffx.157772.1.S1_at	B	B1S	POPTR_0011s04940	POPTR_0011s04940 (5:181)	NA	NA	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157774.1.S1_at	B	B1S	POPTR_0018s10570	POPTR_0018s10570 (8:456)	NA	NA	P34125	Diacylglycerol kinase A	AT2G18730.1	diacylglycerol kinase 3 	LOC_Os02g54650.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.157784.1.S1_at	B	B1S	POPTR_0014s15340	POPTR_0014s15340 (4:854)	NA	NA	Q8RX83	Cellulose synthase-like protein B3	AT2G32530.1	cellulose synthase-like B3 	LOC_Os10g20090.2	"CSLH1 - cellulose synthase-like family H, expressed"	Medtr2g104470.1	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157788.1.S1_at	B	B1S	POPTR_0007s13080	POPTR_0007s13080 (7:1725)	NA	NA	NA	NA	AT2G18245.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g04110.1	expressed protein	Medtr5g020580.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157792.1.S1_at	B	B1S	POPTR_0014s16980	POPTR_0014s16980 (8:269)	NA	NA	Q6F4F5	Cytochrome P450 724B1	AT3G50660.1	Cytochrome P450 superfamily protein 	LOC_Os04g39430.1	"cytochrome P450, putative, expressed"	Medtr7g032660.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.157814.1.S1_at	B	B1S	POPTR_0017s12700	POPTR_0017s12700 (0:482)	NA	NA	NA	NA	AT3G49645.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g16140.1	"FAD binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157815.1.S1_at	B	B1S	POPTR_0002s03790	POPTR_0002s03790 (5:294)	NA	NA	P04844	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	AT4G21150.3	ribophorin II (RPN2) family protein 	LOC_Os01g68324.2	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0071212|subsynaptic reticulum||GO:0008250|oligosaccharyltransferase complex
PtpAffx.157825.2.S1_at	B	B1S	POPTR_0018s13250	POPTR_0018s13250 (3:95)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157992.1.A1_at	B	B1S	POPTR_0010s11970	POPTR_0010s11970 (8:256)	NA	NA	Q9ZSQ4	"Phosphoglucomutase, cytoplasmic"	AT1G70730.3	Phosphoglucomutase/phosphomannomutase family protein 	LOC_Os03g50480.1	"phosphoglucomutase, putative, expressed"	Medtr4g157910.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.157995.1.A1_at	B	B1S	POPTR_0010s18120	POPTR_0010s18120 (0:68)	NA	NA	Q9SAK4	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.158009.1.A1_at	B	B1S	POPTR_0001s02880	POPTR_0001s02880 (2:388)	NA	NA	Q9FUR2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 2"	AT4G18010.2	myo-inositol polyphosphate 5-phosphatase 2 	LOC_Os01g51890.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr5g014290.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158014.1.A1_at	B	B1S	POPTR_0015s04190	POPTR_0015s04190 (1:895)	NA	NA	P0A9T5	Protein tas	AT1G04420.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os11g42540.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g136670.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.158036.1.A1_at	B	B1S	POPTR_0008s04930	POPTR_0008s04930 (7:199)	NA	NA	Q9FY46	"Sulfate transporter 4.1, chloroplastic"	AT5G13550.1	sulfate transporter 4.1 	LOC_Os09g06499.2	"sulfate transporter 4.1, chloroplast precursor, putative, expressed"	Medtr7g022760.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.158042.1.A1_a_at	B	B1S	POPTR_0015s00860	POPTR_0015s00860 (8:381)	scaffold_15:500436-500902(-) (11)	NA	NA	NA	AT5G53660.1	growth-regulating factor 7 	LOC_Os04g51190.3	"growth-regulating factor, putative, expressed"	Medtr3g123080.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.158042.2.A1_at	B	B1S	POPTR_0012s02950	POPTR_0012s02950 (7:363)	scaffold_12:2387906-2388316(-) (10)	NA	NA	NA	AT5G53660.1	growth-regulating factor 7 	LOC_Os03g51970.1	"growth-regulating factor, putative, expressed"	Medtr3g123080.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.158051.1.A1_at	B	B1S	POPTR_0001s24940	POPTR_0001s24940 (0:637)	NA	NA	O81077	Abscisic acid 8'-hydroxylase 2	AT2G29090.2	"cytochrome P450, family 707, subfamily A, polypeptide 2 "	LOC_Os02g47470.1	"cytochrome P450, putative, expressed"	Medtr5g025670.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.158052.1.A1_at	B	B1S	POPTR_0008s20840	POPTR_0008s20840 (8:398)	NA	NA	NA	NA	AT5G19160.1	TRICHOME BIREFRINGENCE-LIKE 11 	LOC_Os12g05080.1	"PMR5, putative, expressed"	Medtr7g133010.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1581.2.A1_at	B	B1S	POPTR_0004s05230	POPTR_0004s05230 (7:554)	NA	NA	Q9SF32	Protein IQ-DOMAIN 1	AT2G33990.1	IQ-domain 9 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158107.4.S1_at	B	B1S	POPTR_0011s09160	POPTR_0011s09160 (8:218)	NA	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.1	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.2	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr5g100690.1	"Dihydrolipoamide acetyltransferase, long form "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.158109.1.A1_at	B	B1S	POPTR_0015s02010	POPTR_0015s02010 (0:243)	NA	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr1g034440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.158211.1.S1_at	B	B1S	POPTR_0001s30880	POPTR_0001s30880 (8:522)	NA	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT2G15320.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g43250.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g021240.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.158226.1.A1_at	B	B1S	POPTR_0002s06610	POPTR_0002s06610 (8:462)	NA	NA	Q9SB58	Probable S-acyltransferase At4g24630	AT4G24630.1	DHHC-type zinc finger family protein 	LOC_Os05g36090.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr1g124850.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.15823.1.A1_at	B	B1S	POPTR_0014s17590	POPTR_0014s17590 (8:1440)	scaffold_14:13852831-13854294(-) (10)	NA	Q9SU40	Monocopper oxidase-like protein SKU5	AT5G48450.1	SKU5  similar 3 	LOC_Os01g01030.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.158411.1.S1_at	B	B1S	POPTR_0008s20730	POPTR_0008s20730 (8:42)	NA	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33400.1	"basic 7S globulin precursor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158434.1.A1_at	B	B1S	POPTR_0013s06150	POPTR_0013s06150 (4:171)	scaffold_13:4550595-4551011(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158456.1.S1_at	B	B1S	POPTR_0003s13400	POPTR_0003s13400 (8:1677)	NA	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158491.1.A1_at	B	B1S	POPTR_0007s15420	POPTR_0007s15420 (8:236)	NA	NA	Q9LHE5	Mitochondrial import receptor subunit TOM40 homolog 1	AT3G20000.1	translocase of the outer mitochondrial membrane 40 	LOC_Os03g20750.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr4g156410.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.158653.1.A1_at	B	B1S	POPTR_0022s00880	POPTR_0022s00880 (8:729)	scaffold_22:474072-474880(+) (11)	NA	Q9LVC9	60S acidic ribosomal protein P3-2	AT5G57290.1	60S acidic ribosomal protein family 	LOC_Os01g13080.1	"60S acidic ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.158656.2.S1_at	B	B1S	POPTR_0006s04890	POPTR_0006s04890 (6:413)	scaffold_6:3422189-3422702(-) (9)	NA	NA	NA	AT2G41810.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158716.1.S1_at	B	B2S	POPTR_0004s22570	POPTR_0009s01160 (0:517)//POPTR_0004s22570 (8:512)	NA	NA	NA	NA	AT5G22930.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.1	expressed protein	Medtr4g076380.1	Protein of unknown function DUF1635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158790.1.S1_at	B	B1S	POPTR_0001s23030	POPTR_0001s23030 (3:50)	NA	NA	Q2V452	CBL-interacting serine/threonine-protein kinase 3	AT2G26980.3	CBL-interacting protein kinase 3 	LOC_Os12g03810.2	"CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g095470.2	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.158805.1.S1_at	B	B2S	POPTR_0001s17250	POPTR_0001s17250 (5:1546)//POPTR_0001s17230 (4:721)	scaffold_1:14071074-14075709(-) (9)	NA	NA	NA	AT4G25970.1	phosphatidylserine decarboxylase 3 	LOC_Os01g72940.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr2g008340.1	C2; Calcium-binding EF-hand; Phosphatidylserine decarboxylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158865.1.S1_at	B	B2S	POPTR_0014s03700	POPTR_0014s03700 (5:190)//POPTR_0014s03730 (0:141)	NA	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os09g26940.1	"cytochrome P450, putative, expressed"	Medtr6g009150.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.1589.2.S1_at	B	B1S	POPTR_0016s12210	POPTR_0016s12210 (0:331)	NA	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158986.1.S1_at	B	B1S	POPTR_0003s01620	POPTR_0003s01620 (8:450)	scaffold_3:1488490-1492534(-) (10)	NA	NA	NA	AT1G68140.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.2	expressed protein	AC233560_2.1	Protein of unknown function DUF1644 AC233560.2 3733-2305 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159029.3.A1_at	B	B1S	POPTR_0014s01400	POPTR_0014s01400 (0:105)	NA	NA	Q801S4	Uncharacterized protein C22orf9 homolog	AT1G59520.1	CW7 	LOC_Os07g14514.3	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159065.1.S1_at	B	B1S	POPTR_0008s17020	POPTR_0008s17020 (0:23)	NA	NA	P31049	Uncharacterized methyltransferase in lpd-3 5'region	AT3G23510.1	Cyclopropane-fatty-acyl-phospholipid synthase 	LOC_Os12g16650.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr1g064910.1	Cyclopropane-fatty-acyl-phospholipid synthase 	GO:0008610|lipid biosynthetic process	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity||GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
PtpAffx.159087.1.S1_at	B	B2S	POPTR_0004s05160	POPTR_0011s07810 (2:2013)//POPTR_0004s05160 (8:1952)	NA	NA	Q9BZZ5	Apoptosis inhibitor 5	AT2G34040.1	Apoptosis inhibitory protein 5 (API5) 	LOC_Os02g20930.1	"apoptosis inhibitor 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15919.2.A1_at	B	B1S	POPTR_0006s10910	POPTR_0006s10910 (6:428)	NA	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT5G01890.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g080410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.159243.1.A1_at	B	B1A	POPTR_0010s25530	POPTR_0010s25530 (5:206)	scaffold_10:21175140-21175646(-) (11)	NA	NA	NA	AT2G28690.1	Protein of unknown function (DUF1635) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159287.1.A1_at	B	B1S	POPTR_0005s24030	POPTR_0005s24030 (0:279)	NA	NA	Q41387	"Photosystem II reaction center W protein, chloroplastic"	AT2G30570.1	photosystem II reaction center W 	LOC_Os05g43310.1	"photosystem II reaction center W protein, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	GO:0009523|photosystem II||GO:0009507|chloroplast
PtpAffx.15938.1.S1_at	B	B1S	POPTR_0015s05170	POPTR_0015s05170 (8:200)	NA	NA	NA	NA	AT1G73470.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 72 Blast hits to 72 proteins in 35 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g27610.1	conserved hypothetical protein	Medtr4g154500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159433.1.A1_at	B	B1S	POPTR_0016s07640	POPTR_0016s07640 (1:1299)	NA	NA	Q5ASQ0	Peptidyl-prolyl cis-trans isomerase-like 1	AT2G36130.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g44520.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.159480.1.A1_at	B	B1S	POPTR_0018s01090	POPTR_0018s01090 (2:493)	scaffold_18:1000164-1001645(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159519.1.A1_at	B	B1S	POPTR_0004s24230	POPTR_0004s24230 (4:262)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159549.2.A1_at	B	B1S	POPTR_0010s19000	POPTR_0010s19000 (6:457)	NA	NA	NA	NA	AT5G05365.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g61070.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g091130.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.159553.1.A1_at	B	B1A	POPTR_0010s11200	POPTR_0010s11200 (5:172)	scaffold_10:11533219-11533541(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159592.1.A1_at	B	B1S	POPTR_0003s14390	POPTR_0003s14390 (8:211)	NA	NA	P19813	Trehalase	AT4G24040.1	trehalase 1 	LOC_Os10g37660.1	"trehalase precursor, putative, expressed"	NA	NA	GO:0005991|trehalose metabolic process	"GO:0004555|""alpha,alpha-trehalase activity"""	NA
PtpAffx.159747.1.A1_at	B	B1S	POPTR_0006s27700	POPTR_0006s27700 (3:587)	NA	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159753.2.A1_a_at	B	B1S	POPTR_0008s14170	POPTR_0008s14170 (6:903)	NA	NA	NA	NA	AT1G75010.1	GTP binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159753.2.A1_at	B	B1S	POPTR_0008s14170	POPTR_0008s14170 (8:576)	NA	NA	NA	NA	AT1G75010.1	GTP binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159810.2.A1_at	B	B1S	POPTR_0010s04820	POPTR_0010s04820 (3:65)	scaffold_10:5977250-5977779(-) (9)	NA	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.159816.1.A1_at	B	B1S	POPTR_0004s01180	POPTR_0004s01180 (0:12)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159889.1.A1_at	B	B1S	POPTR_0006s08470	POPTR_0006s08470 (2:2082)	NA	NA	NA	NA	AT3G09430.1	unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g49510.1	expressed protein	Medtr7g067520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159911.1.A1_at	B	B1S	POPTR_0001s28870	POPTR_0001s28870 (8:221)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159948.1.A1_at	B	B1S	POPTR_0009s03270	POPTR_0009s03270 (0:218)	scaffold_9:3950904-3951182(-) (10)	NA	NA	NA	AT5G59800.1	methyl-CPG-binding domain 7 	NA	NA	Medtr2g114510.1	Methyl-CpG binding 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.159963.1.A1_at	B	B1S	POPTR_0008s11010	POPTR_0008s11010 (7:562)	NA	NA	NA	NA	AT3G25545.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11970.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160025.1.A1_at	B	B1S	POPTR_0004s05740	POPTR_0004s05740 (0:249)	NA	NA	Q9UHR5	SAP30-binding protein	AT1G29220.1	transcriptional regulator family protein 	LOC_Os01g55490.1	"transcriptional regulator family protein, putative, expressed"	Medtr1g107610.1	HCNGP-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160054.1.A1_at	B	B1S	POPTR_0007s01160	POPTR_0007s01160 (0:291)	NA	NA	O49453	Uncharacterized protein At4g28440	AT4G28440.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160055.2.A1_at	B	B1S	POPTR_0014s02780	POPTR_0014s02780 (1:1403)	NA	NA	NA	NA	AT1G45207.2	Remorin family protein 	LOC_Os02g52810.1	"remorin C-terminal domain containing protein, putative, expressed"	Medtr1g024260.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1601.1.S1_at	B	B1S	POPTR_0006s08530	POPTR_0006s08530 (0:304)	NA	NA	O24058	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr7g068170.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
PtpAffx.1601.1.S1_x_at	B	B1S	POPTR_0006s08530	POPTR_0006s08530 (1:346)	NA	NA	O24058	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr7g068170.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
PtpAffx.1601.25.A1_at	B	B1S	POPTR_0010s20810	POPTR_0010s20810 (0:413)	NA	NA	Q7X9A0	"Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic"	AT2G39730.1	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.16012.1.S1_at	B	B1A	POPTR_0019s05130	POPTR_0019s05130 (5:373)	NA	NA	Q93YX4	5'-adenylylsulfate reductase-like 5	AT3G03860.1	APR-like 5 	LOC_Os03g59170.1	"OsAPRL5  adenosine 5'-phosphosulfate reductase-like OsAPRL5, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160128.1.A1_at	B	B1S	POPTR_0001s17140	POPTR_0001s17140 (0:18)	scaffold_1:14003123-14003561(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160131.2.A1_at	B	B1S	POPTR_0017s05650	POPTR_0017s05650 (8:663)	NA	NA	NA	NA	AT3G59520.1	RHOMBOID-like protein 13 	LOC_Os01g67040.2	"OsRhmbd5 - Putative Rhomboid homologue, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.160182.2.A1_at	B	B2S	POPTR_0016s00940	POPTR_0006s01830 (0:302)//POPTR_0016s00940 (7:297)	scaffold_16:361588-361942(-) (11)	NA	Q9ATB4	Transcriptional adapter ADA2b	AT4G16420.2	homolog of yeast ADA2 2B 	LOC_Os03g53960.1	"transcriptional adaptor, putative, expressed"	Medtr2g030360.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; SWIRM; Homeodomain-related "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.160199.1.A1_at	B	B1S	POPTR_0006s04550	POPTR_0006s04550 (7:730)	NA	NA	Q0SE35	Glycerol-3-phosphate dehydrogenase [NAD(P)+] 1	AT2G41540.3	6-phosphogluconate dehydrogenase family protein 	LOC_Os01g71280.1	"glycerol-3-phosphate dehydrogenase, putative, expressed"	Medtr7g108180.1	"NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal "	GO:0005975|carbohydrate metabolic process||GO:0055114|oxidation reduction	"GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.160224.1.A1_s_at	B	B1S	POPTR_0004s03730	POPTR_0004s03730 (7:308)	scaffold_4:2608542-2608947(+) (11)	NA	NA	NA	AT1G11125.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1). 	NA	NA	Medtr2g014420.1	"CK25, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160251.1.A1_at	B	B1S	POPTR_0007s13310	POPTR_0007s13310 (7:279)	scaffold_7:13437041-13437456(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160348.1.A1_at	B	B1S	POPTR_0003s09830	POPTR_0003s09830 (1:274)	NA	NA	P26302	"Phosphoribulokinase, chloroplastic"	AT1G32060.1	phosphoribulokinase 	LOC_Os02g47020.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr5g027690.1	Phosphoribulokinase/uridine kinase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160378.1.A1_at	B	B1S	POPTR_0012s03300	POPTR_0012s03300 (7:204)	NA	NA	NA	NA	AT3G19180.1	paralog of ARC6 	LOC_Os04g57920.1	"OsFBX154 - F-box domain containing protein, expressed"	Medtr6g089760.1	"ARC6H, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160390.2.A1_at	B	B1S	POPTR_0015s00510	POPTR_0015s00510 (8:515)	NA	NA	Q0JH50	Gibberellin 20 oxidase 2	AT5G24530.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g03034.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.1604.2.A1_a_at	B	B1S	POPTR_0008s06500	POPTR_0008s06500 (7:153)	scaffold_8:3862214-3862765(-) (11)	NA	Q76P23	Mitochondrial substrate carrier family protein Q	AT2G39970.1	Mitochondrial substrate carrier family protein 	LOC_Os03g15860.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g089250.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160459.1.A1_at	B	B1A	POPTR_0005s19140	POPTR_0005s19140 (5:166)	scaffold_5:17746646-17747052(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160490.2.A1_at	B	B1S	POPTR_0017s02960	POPTR_0017s02960 (0:498)	NA	NA	NA	NA	AT5G16720.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160535.1.A1_at	B	B1S	POPTR_0007s07000	POPTR_0007s07000 (8:475)	NA	NA	NA	NA	AT2G22140.1	essential meiotic endonuclease 1B 	LOC_Os04g55500.1	expressed protein	Medtr4g141320.1	hypothetical protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0005515|protein binding||GO:0004518|nuclease activity||GO:0003677|DNA binding	NA
PtpAffx.160583.1.A1_at	B	B1S	POPTR_0006s25970	POPTR_0006s25970 (0:741)	NA	NA	Q9LDK9	Beta-adaptin-like protein A	AT5G11490.1	adaptin family protein 	LOC_Os01g43630.2	"adaptin, putative, expressed"	Medtr3g132640.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.160607.1.A1_at	B	B1S	POPTR_0009s07940	POPTR_0009s07940 (6:106)	scaffold_9:7348557-7348822(+) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G58530.1	Glutaredoxin family protein 	LOC_Os01g61350.1	"glutaredoxin, putative, expressed"	Medtr5g080620.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.160632.1.A1_at	B	B1S	POPTR_0001s45980	POPTR_0001s45980 (8:234)	NA	NA	Q55FG3	Putative vacuolar protein sorting-associated protein 13C	AT5G24740.1	Protein of unknown function (DUF1162) 	LOC_Os08g02350.1	expressed protein	Medtr2g007360.1	C-5 cytosine-specific DNA methylase; Vacuolar protein sorting-associated protein 	GO:0008104|protein localization	NA	NA
PtpAffx.16094.1.S1_at	B	B1S	POPTR_0001s19330	POPTR_0001s19330 (7:270)	scaffold_1:16941879-16942271(-) (11)	NA	NA	NA	AT5G25360.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). 	LOC_Os02g10720.1	expressed protein	Medtr4g005450.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160945.1.S1_at	B	B2S	POPTR_0003s04750	POPTR_0003s04750 (7:933)//POPTR_0003s04740 (3:572)	scaffold_3:5757230-5763733(-) (10)	NA	NA	NA	AT3G16350.1	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.160976.1.A1_at	B	B1S	POPTR_0001s10340	POPTR_0001s10340 (0:78)	NA	NA	Q9BZJ0	Crooked neck-like protein 1	AT5G41770.1	"crooked neck protein, putative / cell cycle protein, putative "	LOC_Os05g22260.1	"crooked neck, putative, expressed"	Medtr5g009540.1	"RNA-processing protein, HAT helix "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	GO:0005622|intracellular
PtpAffx.16098.1.S1_at	B	B2S	POPTR_0154s00260	POPTR_0154s00260 (8:630)//POPTR_0017s02280 (7:589)	NA	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os08g45150.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.16099.1.S1_at	B	B1S	POPTR_0003s13920	POPTR_0003s13920 (0:224)	NA	NA	NA	NA	AT1G64385.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 66 Blast hits to 66 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os05g49750.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161039.1.S1_at	B	B1S	POPTR_0018s07160	POPTR_0018s07160 (2:401)	NA	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
PtpAffx.161131.1.S1_at	B	B2S	POPTR_0002s14750	POPTR_0002s14750 (7:550)//POPTR_0014s06400 (3:531)	NA	NA	O81312	UDP-glucuronate 4-epimerase 3	AT4G00110.1	UDP-D-glucuronate 4-epimerase 3 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr4g025510.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.161251.1.S1_at	B	B3S	POPTR_0013s08110	POPTR_0013s08110 (8:864)//POPTR_0583s00210 (7:863)//POPTR_0019s08430 (7:863)	NA	NA	O22881	Potassium transporter 2	AT2G40540.2	potassium transporter 2 	LOC_Os03g21890.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.161290.1.S1_at	B	B1S	POPTR_0006s23740	POPTR_0006s23740 (6:316)	NA	NA	NA	NA	AT2G26340.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g07960.1	expressed protein	Medtr3g139290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161294.2.S1_at	B	B1S	POPTR_0015s04390	POPTR_0015s04390 (8:285)	NA	NA	NA	NA	AT1G48620.1	high mobility group A5 	LOC_Os05g51850.1	"AT hook-containing DNA-binding protein, putative, expressed"	Medtr4g155220.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.161406.1.S1_at	B	B1S	POPTR_0015s11400	POPTR_0015s11400 (8:873)	scaffold_15:11975762-11977921(+) (10)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os01g70100.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.161454.1.S1_at	B	B1S	POPTR_0002s11150	POPTR_0002s11150 (8:455)	NA	NA	Q9LRH6	GATA transcription factor 25	AT4G24470.2	GATA-type zinc finger protein with TIFY domain 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149710.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.161461.1.S1_at	B	B1S	POPTR_0006s05200	POPTR_0006s05200 (4:167)	NA	NA	Q64520	Guanylate kinase	AT3G57550.2	guanylate kinase 	LOC_Os12g33100.1	"guanylate kinase, putative, expressed"	Medtr7g110630.2	Guanylate kinase/L-type calcium channel region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16149.1.S1_at	B	B1S	POPTR_0016s04130	POPTR_0016s04130 (1:555)	NA	NA	Q05932	"Folylpolyglutamate synthase, mitochondrial"	AT3G10160.1	DHFS-FPGS homolog C 	LOC_Os03g02030.1	"folylpolyglutamate synthase, mitochondrial precursor, putative, expressed"	Medtr5g088540.1	Folylpolyglutamate synthetase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16151.1.A1_at	B	B1S	POPTR_0009s04270	POPTR_0009s04270 (4:124)	NA	NA	P83941	Transcription elongation factor B polypeptide 1	AT5G59140.1	BTB/POZ domain-containing protein 	LOC_Os11g48030.1	"skp1 family, tetramerisation domain containing protein, expressed"	NA	NA	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.16154.1.S1_at	B	B1A	POPTR_0014s09290	POPTR_0014s09290 (4:271)	NA	NA	NA	NA	AT3G61680.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g43140.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.16161.1.S1_at	B	B1S	POPTR_0006s23130	POPTR_0006s23130 (8:225)	NA	NA	Q92539	Phosphatidate phosphatase LPIN2	AT3G09560.3	Lipin family protein 	LOC_Os05g38710.1	"lipin, N-terminal conserved region family protein, expressed"	Medtr7g120540.1	"Lipin, N-terminal conserved region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161625.1.S1_at	B	B1S	POPTR_0006s04330	POPTR_0006s04330 (4:207)	NA	NA	P54453	Uncharacterized protein yqeH	AT3G57180.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g30380.1	"GTP binding protein, putative, expressed"	Medtr7g107700.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.16163.1.S1_at	B	B1S	POPTR_0007s07700	POPTR_0007s07700 (5:474)	NA	NA	Q9FMY1	Cytochrome P450 86B1	AT5G23190.1	"cytochrome P450, family 86, subfamily B, polypeptide 1 "	LOC_Os10g34480.1	"cytochrome P450, putative, expressed"	Medtr4g101000.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.161637.1.S1_at	B	B1S	POPTR_0017s06130	POPTR_0017s06130 (5:343)	NA	NA	NA	NA	AT1G05870.4	Protein of unknown function (DUF1685) 	LOC_Os11g17930.1	expressed protein	Medtr1g146930.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161656.1.S1_at	B	B1S	POPTR_0005s25310	POPTR_0005s25310 (7:257)	NA	NA	NA	NA	AT1G75400.1	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161704.1.S1_at	B	B1S	POPTR_0010s21480	POPTR_0010s21480 (7:126)	NA	NA	NA	NA	AT2G39570.1	ACT domain-containing protein 	LOC_Os05g02220.3	"ACT domain containing protein, expressed"	Medtr7g025660.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.161774.1.S1_at	B	B1A	POPTR_0005s08020	POPTR_0005s08020 (8:496)	scaffold_5:5515363-5516000(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161907.1.A1_at	B	B1S	POPTR_0004s11510	POPTR_0004s11510 (7:259)	NA	NA	Q9S7W5	Transcription factor TCP13	AT3G02150.2	plastid transcription factor 1 	LOC_Os01g55750.3	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161912.1.A1_at	B	B1S	POPTR_0002s06560	POPTR_0002s06560 (0:1455)	NA	NA	NA	NA	AT1G34000.1	one-helix protein 2 	LOC_Os01g40710.1	"high light inducible protein, putative, expressed"	Medtr1g124760.1	"one-helix protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161917.1.A1_at	B	B1S	POPTR_0001s12660	POPTR_0001s12660 (6:324)	NA	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT1G44960.1	SNARE associated Golgi protein family 	LOC_Os11g33100.1	"SNARE associated Golgi protein, putative, expressed"	Medtr7g006300.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161923.1.A1_at	B	B1S	POPTR_0016s05950	POPTR_0016s05950 (5:1401)	NA	NA	Q9FG36	"Thioredoxin-like 3-1, chloroplastic"	AT5G06690.1	WCRKC thioredoxin 1 	LOC_Os02g53400.1	"thioredoxin, putative, expressed"	Medtr7g112190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.161939.1.A1_at	B	B1S	POPTR_0008s03310	POPTR_0008s03310 (7:550)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161948.1.A1_at	B	B1S	POPTR_0010s18160	POPTR_0010s18160 (5:457)	NA	NA	Q7ZX53	Solute carrier family 22 member 15-like	AT1G16390.1	organic cation/carnitine transporter 3 	LOC_Os07g37510.1	"organic cation transporter-related, putative"	Medtr4g031840.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161952.1.A1_at	B	B1A	POPTR_0002s17190	POPTR_0002s17190 (7:403)	NA	NA	NA	NA	AT4G18230.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). 	LOC_Os03g30934.3	"UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed"	Medtr2g126390.1	Oligosaccharide biosynthesis protein Alg14 like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161955.1.A1_at	B	B1S	POPTR_0007s12570	POPTR_0007s12570 (0:280)	NA	NA	Q15427	Splicing factor 3B subunit 4	AT2G18510.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os10g31900.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g087340.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.161987.1.S1_at	B	B1S	POPTR_0007s10780	POPTR_0007s10780 (6:430)	NA	NA	P47927	Floral homeotic protein APETALA 2	AT4G36920.2	Integrase-type DNA-binding superfamily protein 	LOC_Os04g55560.3	"AP2 domain containing protein, expressed"	Medtr5g016710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.162007.1.A1_at	B	B2S	POPTR_0003s12050	POPTR_0003s12040 (0:3336)//POPTR_0003s12050 (4:276)	NA	NA	Q96EN8	Molybdenum cofactor sulfurase	AT5G51920.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g43180.1	expressed protein	Medtr1g129690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162012.1.A1_at	B	B1S	POPTR_0003s11110	POPTR_0003s11110 (0:219)	NA	NA	NA	NA	AT4G22560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 380 Blast hits to 380 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g44280.1	"zinc finger protein, putative"	Medtr5g012350.1	"AT1G62520, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162022.1.A1_at	B	B1S	POPTR_0018s11790	POPTR_0018s11790 (0:22)	NA	NA	NA	NA	AT5G58005.2	"Cytochrome c oxidase, subunit Vib family protein "	LOC_Os08g34270.2	expressed protein	Medtr8g145690.1	hypothetical protein 	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
PtpAffx.162024.1.A1_at	B	B1S	POPTR_0014s07670	POPTR_0014s07670 (6:482)	NA	NA	P29675	Pollen-specific protein SF3	AT1G01780.1	GATA type zinc finger transcription factor family protein 	LOC_Os02g42820.1	"OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.162029.1.A1_at	B	B1S	POPTR_0003s05690	POPTR_0003s05690 (7:269)	NA	NA	Q9C968	Cyclin-A2-4	AT1G80370.1	Cyclin A2;4 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr2g123440.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.162072.1.S1_at	B	B1S	POPTR_0004s12380	POPTR_0004s12380 (0:117)	NA	NA	Q9FLZ8	EID1-like F-box protein 2	AT5G39360.1	EID1-like 2 	LOC_Os07g40710.2	"circadian clock coupling factor-related, putative, expressed"	Medtr6g013970.1	"EDL1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162082.1.S1_at	B	B1A	POPTR_0002s13780	POPTR_0002s13780 (7:192)	NA	NA	Q797A7	Uncharacterized amino acid permease YfnA	AT1G05940.1	cationic amino acid transporter 9 	LOC_Os02g43860.1	"amino acid permease, putative, expressed"	Medtr7g103380.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162111.1.S1_at	B	B2S	POPTR_0001s28540	POPTR_0009s07740 (7:608)//POPTR_0001s28540 (7:588)	NA	NA	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
PtpAffx.162190.1.S1_at	B	B1S	POPTR_0017s02410	POPTR_0017s02410 (2:123)	NA	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os04g53620.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162289.2.S1_at	B	B1S	POPTR_0011s10700	POPTR_0011s10700 (8:2636)	NA	NA	P73555	Uncharacterized membrane protein sll0875	AT1G78620.1	"Protein of unknown function DUF92, transmembrane "	LOC_Os01g52864.1	"transmembrane protein, putative, expressed"	Medtr7g062060.1	"Protein of unknown function DUF92, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162331.1.S1_at	B	B2S	POPTR_1962s00200	POPTR_0017s04950 (5:293)//POPTR_1962s00200 (7:284)	NA	NA	NA	NA	NA	NA	LOC_Os11g10590.1	hypothetical protein	NA	NA	GO:0009405|pathogenesis||GO:0051704|multi-organism process	GO:0003674|molecular_function||GO:0008200|ion channel inhibitor activity	GO:0005576|extracellular region
PtpAffx.162497.1.S1_at	B	B1S	POPTR_0009s11660	POPTR_0009s11660 (8:199)	NA	NA	Q9SXA1	Phosphatidylinositol 4-kinase alpha	AT1G49340.1	Phosphatidylinositol 3- and 4-kinase family protein 	LOC_Os03g50320.1	"phosphatidylinositol 4-kinase PI4K, putative, expressed"	Medtr3g159720.1	Ribosomal protein L2; Protein kinase-like; ; 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0004428|inositol or phosphatidylinositol kinase activity"	NA
PtpAffx.16253.1.S1_at	B	B1A	POPTR_0006s26185	POPTR_0006s26185 (4:384)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16255.1.A1_at	B	B1S	POPTR_0007s05140	POPTR_0007s05140 (6:375)	NA	NA	O14327	Polyadenylate-binding protein 2	AT5G10350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g120660.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.162571.1.A1_at	B	B1S	POPTR_0010s08500	POPTR_0010s08500 (8:275)	scaffold_10:9396126-9396573(+) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT4G14465.1	AT-hook motif nuclear-localized protein 20 	LOC_Os02g57520.1	"DNA binding protein, putative, expressed"	Medtr1g093390.1	"DNA-binding protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16258.1.S1_at	B	B1S	POPTR_0014s01000	POPTR_0014s01000 (7:342)	NA	NA	P59099	Amino-acid acetyltransferase	AT4G37670.2	N-acetyl-l-glutamate synthase 2 	LOC_Os03g31690.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g015470.1	Amino-acid N-acetyltransferase (ArgA) 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.16260.1.S1_at	B	B1S	POPTR_0009s14220	POPTR_0009s14220 (6:1599)	NA	NA	Q2TBV6	Coiled-coil domain-containing protein 124	AT1G16210.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 16107 Blast hits to 8386 proteins in 1107 species: Archae - 26; Bacteria - 3370; Metazoa - 4013; Fungi - 1516; Plants - 526; Viruses - 120; Other Eukaryotes - 6536 (source: NCBI BLink). 	LOC_Os04g47370.2	"coiled-coil domain-containing protein 124, putative, expressed"	Medtr3g163920.1	Protein of unknown function DUF1014 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162631.1.S1_at	B	B1S	POPTR_0002s25020	POPTR_0002s25020 (7:594)	NA	NA	Q9SRS9	E3 ubiquitin-protein ligase CHIP	AT3G07370.1	carboxyl terminus of HSC70-interacting protein 	LOC_Os05g01460.1	"STIP1 homology and U box-containing protein 1, putative, expressed"	Medtr8g012200.2	U box; ; 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.16272.1.S1_at	B	B1S	POPTR_0008s14620	POPTR_0008s14620 (8:460)	NA	NA	P40761	Uncharacterized protein yuxK	AT1G24095.1	Putative thiol-disulphide oxidoreductase DCC 	LOC_Os06g13010.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g036540.1	Putative thiol-disulphide oxidoreductase DCC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162837.1.S1_at	B	B2S	POPTR_0505s00200	POPTR_0505s00200 (7:530)//POPTR_0005s00650 (3:440)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.1	expressed protein	Medtr3g109820.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.16285.1.A1_at	B	B1S	POPTR_0018s00760	POPTR_0018s00760 (0:10)	NA	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.16291.1.A1_at	B	B1S	POPTR_0019s04150	POPTR_0019s04150 (8:623)	NA	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143160.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.16293.1.A1_at	B	B1S	POPTR_0009s09410	POPTR_0009s09410 (8:561)	NA	NA	NA	NA	AT1G49870.1	"unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 6518 Blast hits to 5022 proteins in 522 species: Archae - 49; Bacteria - 635; Metazoa - 3264; Fungi - 379; Plants - 242; Viruses - 9; Other Eukaryotes - 1940 (source: NCBI BLink). "	LOC_Os03g40780.1	"transport protein-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162939.1.S1_at	B	B1S	POPTR_0001s05560	POPTR_0001s05560 (5:782)	NA	NA	NA	NA	AT5G12950.1	Putative glycosyl hydrolase of unknown function (DUF1680) 	LOC_Os02g10190.1	"DUF1680 domain containing protein, putative, expressed"	Medtr4g086870.1	Protein of unknown function DUF1680 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16299.1.S1_at	B	B1A	POPTR_0008s07460	POPTR_0008s07460 (3:318)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16311.1.S1_s_at	B	B1S	POPTR_0003s17750	POPTR_0003s17750 (8:348)	scaffold_3:17056798-17057187(-) (10)	NA	Q9C5D2	F-box/LRR-repeat protein 4	AT1G80630.1	RNI-like superfamily protein 	LOC_Os11g42160.1	"F-box/LRR-repeat protein 3, putative, expressed"	Medtr4g006640.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.163136.1.S1_at	B	B2S	POPTR_0001s02890	POPTR_0004s11660 (4:321)//POPTR_0001s02890 (4:321)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g086670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163141.1.S1_s_at	B	B1S	POPTR_0008s03380	POPTR_0008s03380 (0:11)	scaffold_8:1791827-1792228(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16321.1.S1_at	B	B1S	POPTR_0007s07480	POPTR_0007s07480 (8:508)	NA	NA	Q9FMX2	Transcription factor TCP7	AT5G23280.1	TCP family transcription factor  	LOC_Os12g07480.1	"TCP family transcription factor, putative, expressed"	Medtr1g143870.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163254.1.S1_at	B	B1S	POPTR_0012s12880	POPTR_0012s12880 (7:411)	NA	NA	NA	NA	AT5G23950.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os08g44850.1	"C2 domain containing protein, putative, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163275.3.A1_at	B	B1S	POPTR_0009s13920	POPTR_0009s13920 (3:81)	NA	NA	P93768	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G20200.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os09g37000.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.163326.1.S1_s_at	B	B2S	POPTR_0013s07730	POPTR_0013s07740 (5:712)//POPTR_0013s07730 (6:289)	scaffold_13:6573505-6577239(-) (11)	NA	Q84T61	Heat stress transcription factor A-1	AT5G16820.2	heat shock factor 3 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g107610.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16335.1.A1_at	B	B1S	POPTR_0010s05550	POPTR_0010s05550 (2:503)	NA	NA	Q94C27	F-box protein At1g70590	AT1G70590.1	F-box family protein 	LOC_Os04g40030.1	"OsFBO17 - F-box and other domain containing protein, expressed"	Medtr5g034530.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16341.1.A1_at	B	B1S	POPTR_0002s23360	POPTR_0002s23360 (8:254)	NA	NA	Q55CX9	Probable importin-7 homolog	AT2G31660.1	ARM repeat superfamily protein 	LOC_Os04g26841.1	"importin-8, putative"	Medtr7g021300.1	Armadillo-like helical 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.163446.1.S1_at	B	B1S	POPTR_0010s06300	POPTR_0010s06300 (8:378)	NA	NA	NA	NA	AT2G35880.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os06g40450.3	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163467.1.S1_at	B	B1S	POPTR_0001s46430	POPTR_0001s46430 (3:201)	NA	NA	Q8H0W2	Histone deacetylase 9	AT3G44680.1	histone deacetylase 9 	LOC_Os04g33480.1	"histone deacetylase, putative, expressed"	Medtr4g073130.1	Histone deacetylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163499.1.S1_at	B	B1S	POPTR_0008s20530	POPTR_0008s20530 (8:390)	NA	NA	Q8W4J2	Mitogen-activated protein kinase 16	AT5G19010.1	mitogen-activated protein kinase 16 	LOC_Os05g05160.1	"CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g026470.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163529.1.S1_at	B	B1S	POPTR_0008s12530	POPTR_0008s12530 (5:2040)	NA	NA	Q5U4I3	Cyclin-D1-binding protein 1 homolog	AT1G71150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22970.1); Has 105 Blast hits to 103 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 42; Fungi - 6; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os05g48070.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163535.1.S1_at	B	B1S	POPTR_0009s14200	POPTR_0009s14200 (5:431)	NA	NA	Q3EBZ2	F-box protein SKIP23	AT2G17030.1	F-box family protein with a domain of unknown function (DUF295) 	LOC_Os03g51090.1	"OsFBDUF17 - F-box and DUF domain containing protein, expressed"	Medtr3g029140.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16355.1.S1_at	B	B1S	POPTR_0001s14880	POPTR_0001s14880 (6:532)	NA	NA	Q04264	Sister chromatid cohesion protein PDS5	AT4G31880.2	LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). 	LOC_Os02g39920.1	"AT hook motif family protein, expressed"	Medtr1g017070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16358.1.S1_at	B	B1S	POPTR_0003s01110	POPTR_0003s01110 (1:70)	NA	NA	Q9C958	Serine/threonine-protein kinase SRK2B	AT1G60940.2	SNF1-related protein kinase 2.10 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16359.1.A1_at	B	B2S	POPTR_0015s06760	POPTR_0015s06760 (6:547)//POPTR_0015s06770 (6:547)	NA	NA	P42730	Heat shock protein 101	AT1G74310.1	heat shock protein 101 	LOC_Os05g44340.1	"heat shock protein 101, putative, expressed"	Medtr6g014150.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.163628.1.S1_at	B	B1S	POPTR_0019s04850	POPTR_0019s04850 (7:513)	NA	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT1G64760.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g57880.3	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g100300.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.163635.3.A1_at	B	B1S	POPTR_0006s10270	POPTR_0006s10270 (3:216)	scaffold_6:7683710-7684111(+) (9)	NA	Q96329	"Acyl-coenzyme A oxidase 4, peroxisomal"	AT3G51840.1	acyl-CoA oxidase 4 	LOC_Os05g07090.1	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.163669.2.A1_at	B	B1S	POPTR_0016s09990	POPTR_0016s09990 (0:379)	NA	NA	Q93YV9	F-box protein SKIP8	AT3G09250.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os02g54710.1	expressed protein	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.163703.1.S1_at	B	B1S	POPTR_0012s07370	POPTR_0012s07370 (7:95)	NA	NA	NA	NA	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163713.1.S1_at	B	B1S	POPTR_0010s23760	POPTR_0010s23760 (8:133)	NA	NA	P29503	Protein neuralized	AT5G04460.3	RING/U-box superfamily protein 	LOC_Os02g57750.1	"protein binding protein, putative, expressed"	AC235664_19.1	"Haem peroxidase, plant/fungal/bacterial AC235664.1 73370-70390 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16373.1.S1_at	B	B1S	POPTR_0006s13410	POPTR_0006s13410 (8:475)	NA	NA	Q9LYZ7	E3 ubiquitin-protein ligase UPL4	AT5G02880.1	ubiquitin-protein ligase 4 	LOC_Os05g38830.2	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.16379.1.S1_at	B	B1S	POPTR_0016s06250	POPTR_0016s06250 (5:414)	NA	NA	O74835	rRNA biogenesis protein rrp5	AT3G11964.1	RNA binding;RNA binding 	LOC_Os07g10350.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g092300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.16382.1.A1_at	B	B1S	POPTR_0002s03910	POPTR_0002s03910 (8:519)	NA	NA	Q54GH3	Target of Myb protein 1	AT1G06210.1	ENTH/VHS/GAT family protein 	LOC_Os10g42724.1	"VHS and GAT domain containing protein, expressed"	Medtr5g007600.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.163895.1.S1_at	B	B1S	POPTR_0004s15830	POPTR_0004s15830 (7:1553)	NA	NA	A9AT43	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os03g53730.1	"flavoprotein wrbA, putative, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.16390.1.S1_at	B	B1S	POPTR_0004s20090	POPTR_0004s20090 (8:119)	NA	NA	Q12830	Nucleosome-remodeling factor subunit BPTF	AT5G22760.1	PHD finger family protein 	LOC_Os11g05130.1	"PHD-finger family protein, expressed"	Medtr4g073860.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16401.1.A1_at	B	B1S	POPTR_0007s15070	POPTR_0007s15070 (7:859)	NA	NA	NA	NA	AT1G78995.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g49070.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164014.1.S1_at	B	B1S	POPTR_0001s01980	POPTR_0001s01980 (3:1071)	NA	NA	NA	NA	AT1G32230.2	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16402.2.S1_at	B	B1S	POPTR_0004s09280	POPTR_0004s09280 (1:465)	NA	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39080.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr7g073510.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.164050.1.S1_at	B	B1S	POPTR_0003s05500	POPTR_0003s05500 (7:1766)	NA	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.2	"coatomer subunit beta, putative, expressed"	AC234703_19.2	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.164072.2.S1_at	B	B1S	POPTR_0014s01710	POPTR_0014s01710 (6:603)	NA	NA	Q5S1U6	Interferon-related developmental regulator 1	AT1G27760.1	interferon-related developmental regulator family protein / IFRD protein family 	LOC_Os07g39900.1	"interferon-related developmental regulator, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164089.1.S1_at	B	B1S	POPTR_0001s10660	POPTR_0001s10660 (8:1814)	NA	NA	NA	NA	AT4G23895.3	Pleckstrin homology (PH) domain-containing protein 	LOC_Os05g51710.1	"pleckstrin homology domain-containing protein-related taxo, putative, expressed"	Medtr5g009340.1	"pleckstrin homology domain-containing protein-related taxo, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164096.1.S1_at	B	B1S	POPTR_0005s26440	POPTR_0005s26440 (8:699)	NA	NA	NA	NA	AT1G11320.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os06g50850.1	expressed protein	Medtr3g156640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16415.1.A1_at	B	B1S	POPTR_0009s00850	POPTR_0009s00850 (2:317)	NA	NA	Q5QQ56	Xylosyltransferase 1	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g40060.1	"glycosyltransferase family protein, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.16432.2.S1_at	B	B1S	POPTR_0003s17260	POPTR_0003s17260 (7:453)	NA	NA	Q5ZKY4	Inhibitor of growth protein 4	AT3G24010.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os03g04980.1	"PHD-finger domain containing protein, putative, expressed"	Medtr7g100390.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16450.2.S1_a_at	B	B1S	POPTR_0016s12630	POPTR_0016s12630 (5:211)	NA	NA	NA	NA	AT5G01350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g42910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16450.3.S1_at	B	B1S	POPTR_0006s10280	POPTR_0006s10280 (8:2497)	NA	NA	NA	NA	AT5G01350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g42910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16538.1.S1_at	B	B1S	POPTR_0013s07720	POPTR_0013s07720 (6:252)	NA	NA	NA	NA	AT3G10480.2	NAC domain containing protein 50 	NA	NA	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16538.2.A1_a_at	B	B1S	POPTR_0013s07720	POPTR_0013s07720 (5:342)	scaffold_13:6562156-6562710(-) (11)	NA	NA	NA	AT3G10480.2	NAC domain containing protein 50 	NA	NA	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16538.2.A1_at	B	B1S	POPTR_0013s07720	POPTR_0013s07720 (7:510)	NA	NA	NA	NA	AT3G10480.2	NAC domain containing protein 50 	NA	NA	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16539.1.A1_at	B	B1S	POPTR_0001s40180	POPTR_0001s40180 (3:185)	NA	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78860.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23720.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.1654.3.S1_at	B	B1A	POPTR_0017s00850	POPTR_0017s00850 (6:404)	NA	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.2	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16548.2.A1_at	B	B1S	POPTR_0011s10450	POPTR_0011s10450 (8:1005)	NA	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT1G78560.1	Sodium Bile acid symporter family 	LOC_Os04g31210.4	"bile acid sodium symporter family protein, putative, expressed"	Medtr8g118790.2	Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.16593.1.S1_at	B	B1S	POPTR_0003s13360	POPTR_0003s13360 (6:227)	NA	NA	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.166.2.S1_at	B	B2S	POPTR_0015s15640	POPTR_0015s15610 (2:459)//POPTR_0015s15640 (3:413)	NA	NA	Q9SA16	Protein PHLOEM PROTEIN 2-LIKE A9	AT1G10155.1	phloem protein 2-A10 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16601.1.S1_at	B	B1S	POPTR_0010s01650	POPTR_0010s01650 (0:78)	NA	NA	Q42384	Protein pleiotropic regulatory locus 1	AT4G15900.1	pleiotropic regulatory locus 1 	LOC_Os03g21990.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g024610.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16651.1.A1_at	B	B1S	POPTR_0015s00550	POPTR_0015s00550 (7:270)	NA	NA	Q43047	Caffeic acid 3-O-methyltransferase 3	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.168.1.S1_at	B	B1S	POPTR_0014s17720	POPTR_0014s17720 (3:290)	NA	NA	O23051	Ent-kaurenoic acid oxidase 1	AT1G05160.1	"cytochrome P450, family 88, subfamily A, polypeptide 3 "	LOC_Os06g02019.1	"cytochrome P450, putative, expressed"	Medtr5g014420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.1682.2.A1_at	B	B1S	POPTR_0010s11820	POPTR_0010s11820 (3:630)	NA	NA	NA	NA	AT1G70670.1	Caleosin-related family protein 	LOC_Os06g14370.2	"caleosin related protein, putative, expressed"	AC233676_20.1	Caleosin related AC233676.2 83014-79445 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.169.1.S1_at	B	B1S	POPTR_0004s23740	POPTR_0004s23740 (5:532)	NA	NA	Q9SY74	Zinc finger CCCH domain-containing protein 5	AT1G10320.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os02g35150.1	"splicing factor U2AF, putative, expressed"	Medtr2g005300.1	U2 auxiliary factor small subunit 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16913.1.S1_at	B	B1S	POPTR_0006s09940	POPTR_0006s09940 (8:380)	NA	NA	Q9FEL7	Auxin transporter-like protein 2	AT2G38120.1	Transmembrane amino acid transporter family protein 	LOC_Os01g63770.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g024670.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17025.2.A1_at	B	B1S	POPTR_0002s19100	POPTR_0002s19100 (0:516)	NA	NA	Q3EAF9	Probable protein phosphatase 2C 49	AT3G62260.1	Protein phosphatase 2C family protein 	LOC_Os05g04360.1	"protein phosphatase 2C, putative, expressed"	Medtr1g106080.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1704.5.A1_a_at	B	B1S	POPTR_0003s12540	POPTR_0003s12540 (8:31)	NA	NA	P29516	Tubulin beta-8 chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.17167.1.S1_at	B	B1S	POPTR_0004s22410	POPTR_0004s22410 (8:499)	NA	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.17169.1.S1_at	B	B1S	POPTR_0001s15270	POPTR_0001s15270 (4:1372)	scaffold_1:12106205-12107683(-) (10)	NA	NA	NA	AT2G35658.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g013350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17173.2.S1_at	B	B1S	POPTR_0012s13830	POPTR_0012s13830 (8:470)	scaffold_12:13814974-13815482(+) (10)	NA	NA	NA	AT5G62140.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g45460.1	expressed protein	AC229695_26.1	hypothetical protein AC229695.5 123453-125005 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17180.1.A1_at	B	B1S	POPTR_0005s05490	POPTR_0005s05490 (4:524)	scaffold_5:3634825-3638480(+) (11)	NA	NA	NA	AT5G28750.1	Bacterial sec-independent translocation protein mttA/Hcf106 	LOC_Os03g43430.1	"mttA/Hcf106 family protein, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.172.1.S1_at	B	B1S	POPTR_0004s21700	POPTR_0004s21700 (8:268)	NA	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT2G17270.1	phosphate transporter 3;3 	LOC_Os09g38100.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr5g024710.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.172.2.S1_at	B	B1S	POPTR_0004s21700	POPTR_0004s21700 (7:376)	NA	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT2G17270.1	phosphate transporter 3;3 	LOC_Os09g38100.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr5g024710.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17234.1.S1_at	B	B1S	POPTR_0008s23100	POPTR_0008s23100 (8:673)	scaffold_8:18324127-18324831(+) (9)	NA	O24248	Major allergen Pru av 1	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.17263.1.A1_at	B	B1S	POPTR_0010s03040	POPTR_0010s03040 (3:867)	scaffold_10:3578623-3580633(-) (10)	NA	Q3ZWD8	Guanylate kinase	AT3G06200.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g20460.1	"guanylate kinase, putative, expressed"	Medtr2g026460.1	Guanylate kinase/L-type calcium channel region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1734.1.A1_at	B	B1S	POPTR_0008s06050	POPTR_0008s06050 (8:475)	NA	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os03g16150.3	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.17345.2.A1_a_at	B	B1S	POPTR_0003s21390	POPTR_0003s21390 (7:809)	NA	NA	NA	NA	AT2G44290.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g09970.1	"LTPL84 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g133890.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1740.2.S1_at	B	B1S	POPTR_0008s05320	POPTR_0008s05320 (5:732)	NA	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT2G28760.3	UDP-XYL synthase 6 	LOC_Os03g16980.2	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr2g114640.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.17419.2.S1_at	B	B1S	POPTR_0004s17860	POPTR_0004s17860 (7:1110)	scaffold_4:17904634-17905783(-) (9)	NA	Q8L883	Auxin transporter-like protein 5	AT2G21050.1	like AUXIN RESISTANT 2 	LOC_Os03g14080.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g024670.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17456.4.A1_at	B	B1S	POPTR_0074s00230	POPTR_0074s00230 (0:251)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17499.2.S1_at	B	B1S	POPTR_0009s04150	POPTR_0009s04150 (8:956)	NA	NA	NA	NA	AT1G07480.2	"Transcription factor IIA, alpha/beta subunit "	LOC_Os05g22670.1	"transcription factor IIA large subunit, putative, expressed"	Medtr2g117270.1	"Transcription initiation factor IIA, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005672|transcription factor TFIIA complex
PtpAffx.17547.1.S1_at	B	B1S	POPTR_0010s17460	POPTR_0010s17460 (1:44)	scaffold_10:16044980-16048741(+) (10)	NA	NA	NA	AT2G03050.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g57149.1	"mTERF domain containing protein, expressed"	Medtr5g044810.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17550.1.A1_at	B	B1S	POPTR_0016s03750	POPTR_0016s03750 (2:349)	NA	NA	O80366	Two-component response regulator ARR9	AT3G57040.1	response regulator 9 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g039500.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.17571.2.S1_at	B	B1S	POPTR_0010s21730	POPTR_0010s21730 (8:469)	NA	NA	P82538	"PsbP-like protein 1, chloroplastic"	AT3G55330.1	PsbP-like protein 1 	LOC_Os08g25900.1	"PsbP, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.1761.2.S1_at	B	B1S	POPTR_0013s06970	POPTR_0013s06970 (0:290)	NA	NA	NA	NA	AT1G64850.1	Calcium-binding EF hand family protein 	LOC_Os04g51240.1	"EF hand family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1762.1.A1_at	B	B1S	POPTR_0017s10890	POPTR_0017s10890 (7:3101)	NA	NA	Q9VMJ7	Lysine-specific demethylase lid	AT3G01460.1	methyl-CPG-binding domain 9 	LOC_Os02g09920.1	"PHD-finger domain containing protein, putative, expressed"	AC233671_6.1	Bromodomain AC233671.1 18499-21056 H EGN_Mt090430 200	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.17634.1.A1_at	B	B1S	POPTR_0004s22845	POPTR_0004s22845 (6:210)	scaffold_4:21698032-21698492(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17653.3.A1_at	B	B1S	POPTR_0007s10520	POPTR_0007s10520 (7:774)	scaffold_7:10535930-10536906(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17664.2.A1_at	B	B1S	POPTR_0007s07770	POPTR_0007s07770 (1:167)	scaffold_7:6190294-6193582(-) (11)	NA	Q9CQU8	Mitochondrial inner membrane protease subunit 1	AT1G53530.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os11g40500.1	"OsSigP7 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr8g043500.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17696.1.A1_at	B	B1S	POPTR_0007s07440	POPTR_0007s07440 (8:245)	NA	NA	Q7X7A9	F-box protein At1g11270	AT1G11270.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr2g033620.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1770.10.S1_at	B	B1S	POPTR_0001s29540	POPTR_0001s29540 (4:243)	scaffold_1:28195335-28195768(+) (9)	NA	P33154	Pathogenesis-related protein 1	AT2G14610.1	pathogenesis-related gene 1 	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr2g010660.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1770.5.S1_at	B	B1S	POPTR_0004s08500	POPTR_0004s08500 (7:543)	NA	NA	Q43129	Non-specific lipid-transfer protein	AT2G38540.1	lipid transfer protein 1 	LOC_Os12g02310.1	"LTPL11 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17702.1.A1_at	B	B1S	POPTR_0018s09750	POPTR_0018s09750 (6:1501)	scaffold_18:10789393-10790997(-) (9)	NA	Q03194	Plasma membrane ATPase 4	AT2G18960.1	H(+)-ATPase 1 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.17714.1.A1_at	B	B1A	POPTR_0014s05260	POPTR_0014s05260 (5:221)	scaffold_14:3980371-3980768(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17726.1.A1_at	B	B1A	POPTR_0007s12560	POPTR_0007s12560 (8:302)	NA	NA	Q9M065	"Pentatricopeptide repeat-containing protein At4g36680, mitochondrial"	AT4G36680.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g42210.1	"membrane-associated salt-inducible protein like, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17732.1.A1_at	B	B1S	POPTR_0004s19930	POPTR_0004s19930 (7:632)	NA	NA	O22165	Probable ribosome biogenesis protein RLP24	AT2G44860.2	Ribosomal protein L24e family protein 	LOC_Os07g19190.1	"ribosomal protein L24, putative, expressed"	Medtr4g073290.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.17744.1.S1_at	B	B1S	POPTR_0003s04840	POPTR_0003s04840 (8:1481)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g122250.1	Biotin-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.178.2.S1_at	B	B1S	POPTR_0014s13420	POPTR_0014s13420 (7:901)	NA	NA	Q9ZT91	"Elongation factor Tu, mitochondrial"	AT4G02930.1	GTP binding Elongation factor Tu family protein 	LOC_Os03g63410.1	"elongation factor Tu, putative, expressed"	Medtr3g115100.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.1788.1.A1_at	B	B1S	POPTR_0004s21020	POPTR_0004s21020 (0:279)	NA	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.17914.3.A1_at	B	B1S	POPTR_0008s05720	POPTR_0008s05720 (4:198)	NA	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17933.1.A1_at	B	B1S	POPTR_0019s11500	POPTR_0019s11500 (7:363)	NA	NA	O78458	Uncharacterized protein ycf37	AT1G22700.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g32300.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17943.1.A1_at	B	B1S	POPTR_0002s00680	POPTR_0002s00680 (6:780)	scaffold_2:300551-301446(-) (9)	NA	NA	NA	AT2G18196.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os08g40130.1	heavy metal-associated domain containing protein	Medtr3g101130.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.17948.1.S1_at	B	B1S	POPTR_0009s02370	POPTR_0009s02370 (1:174)	NA	NA	Q84WM9	Elongation factor 1-beta 1	AT5G12110.1	"Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6 "	LOC_Os07g46750.1	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.17972.1.A1_at	B	B1S	POPTR_0003s04500	POPTR_0003s04500 (1:123)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17980.4.A1_at	B	B1A	POPTR_0003s09420	POPTR_0003s09420 (5:193)	scaffold_3:10710292-10710846(+) (11)	NA	NA	NA	AT2G35470.1	unknown protein; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g029520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17983.1.A1_at	B	B1S	POPTR_0017s06650	POPTR_0017s06650 (8:77)	NA	NA	Q11011	Puromycin-sensitive aminopeptidase	AT4G33090.1	aminopeptidase M1 	LOC_Os08g30810.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.180.3.S1_at	B	B1S	POPTR_0008s15800	POPTR_0008s15800 (7:442)	scaffold_8:10504654-10518733(-) (11)	NA	P11432	"Early light-induced protein, chloroplastic"	AT3G22840.1	Chlorophyll A-B binding family protein 	LOC_Os07g08160.1	"early light-induced protein, chloroplast precursor, putative, expressed"	AC233674_4.1	"Early light-induced protein, chloroplast precursor, putative AC233674.1 17917-16810 E EGN_Mt090430 200"	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.18005.2.A1_at	B	B1S	POPTR_0009s09820	POPTR_0009s09820 (1:380)	NA	NA	Q9MB73	Limonoid UDP-glucosyltransferase	AT4G15480.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g09510.1	"limonoid UDP-glucosyltransferase, putative, expressed"	Medtr3g067110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18052.1.S1_at	B	B1S	POPTR_0010s16600	POPTR_0010s16600 (8:290)	NA	NA	NA	NA	AT1G10380.1	Putative membrane lipoprotein 	LOC_Os06g25950.1	expressed protein	Medtr5g038340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18064.1.S1_at	B	B1S	POPTR_0011s02970	POPTR_0011s02970 (8:2005)	NA	NA	NA	NA	AT4G18060.1	SH3 domain-containing protein 	LOC_Os07g32460.1	"src homology-3 domain protein 3, putative, expressed"	Medtr4g136530.1	SH3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18096.1.A1_at	B	B1S	POPTR_0011s11030	POPTR_0011s11030 (7:295)	scaffold_11:13725531-13725869(-) (9)	NA	Q7KWM5	"Alpha-1,3-mannosyltransferase ALG2"	AT1G78800.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g49960.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr1g132850.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.18101.2.S1_at	B	B1S	POPTR_0002s00540	POPTR_0002s00540 (3:615)	NA	NA	Q8H0U8	DEAD-box ATP-dependent RNA helicase 42	AT1G20920.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g06344.3	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr2g007080.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.18171.1.A1_at	B	B1S	POPTR_0003s05800	POPTR_0003s05800 (8:86)	NA	NA	Q8TEQ8	GPI ethanolamine phosphate transferase 3	AT5G17250.1	Alkaline-phosphatase-like family protein 	LOC_Os10g08940.2	expressed protein	Medtr5g033600.1	Alkaline phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18173.1.A1_at	B	B1S	POPTR_0002s25050	POPTR_0002s25050 (0:192)	NA	NA	P49211	60S ribosomal protein L32-1	AT4G18100.1	Ribosomal protein L32e 	LOC_Os09g32532.2	"60S ribosomal protein L32, putative, expressed"	Medtr4g134080.1	Ribosomal protein L32e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.18179.1.S1_at	B	B3S	POPTR_0016s02220	POPTR_0016s02230 (0:91)//POPTR_0016s02260 (0:91)//POPTR_0016s02220 (0:91)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22380.1	UDP-glucosyl transferase 85A3 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18217.1.A1_at	B	B1S	POPTR_0010s13650	POPTR_0010s13650 (1:696)	scaffold_10:13446459-13449322(-) (11)	NA	O66119	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AT3G25860.1	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os08g33440.1	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	AC233660_8.1	Biotin/lipoyl attachment; Dihydrolipoamide succinyltransferase AC233660.2 38835-37267 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.18218.1.S1_at	B	B2S	POPTR_0012s01210	POPTR_0012s01210 (7:825)//POPTR_1557s00200 (6:671)	scaffold_12:823260-824216(-) (11)//scaffold_1557:1760-2574(+) (9)	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.18257.1.S1_at	B	B1S	POPTR_0007s12890	POPTR_0007s12890 (5:442)	scaffold_7:13102842-13103407(+) (11)	NA	P26861	"60S ribosomal protein L6, mitochondrial"	AT2G18400.1	ribosomal protein L6 family protein 	LOC_Os03g51510.3	"ribosomal protein L6, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.18261.1.A1_at	B	B1S	POPTR_0004s10100	POPTR_0004s10100 (8:778)	NA	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g024690.1	"Protein kinase; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.18288.1.A1_at	B	B1S	POPTR_0113s00230	POPTR_0113s00230 (8:431)	NA	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18296.1.A1_at	B	B1S	POPTR_0014s16270	POPTR_0014s16270 (0:284)	NA	NA	Q9LUB7	Protein OBERON 2	AT5G48160.2	Protein of unknown function (DUF1423) 	LOC_Os12g32980.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr5g105070.1	"Zinc finger, PHD-type; Arabidopsis thaliana 130.7kDa hypothetical protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18305.1.S1_at	B	B1S	POPTR_0010s01770	POPTR_0010s01770 (8:358)	NA	NA	NA	NA	AT4G15840.1	BTB/POZ domain-containing protein 	LOC_Os01g70670.1	"BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr8g138670.1	BTB/POZ; TatD-related deoxyribonuclease; MATH; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18333.2.S1_at	B	B1S	POPTR_0015s11590	POPTR_0015s11590 (0:129)	NA	NA	NA	NA	AT3G48860.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18350.1.A1_at	B	B1S	POPTR_0001s41770	POPTR_0001s41770 (5:159)	scaffold_1:41471485-41471856(+) (9)	NA	P54697	Myosin-J heavy chain	AT5G54280.2	myosin 2 	LOC_Os07g37560.1	"myosin-Vb, putative, expressed"	Medtr2g095370.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.18366.1.A1_at	B	B1S	POPTR_0010s21360	POPTR_0010s21360 (4:565)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18409.1.A1_at	B	B1S	POPTR_0016s12790	POPTR_0016s12790 (2:222)	scaffold_16:12153263-12153610(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.185.1.S1_at	B	B1A	POPTR_0016s06440	POPTR_0016s06440 (7:460)	NA	NA	Q4V8B1	Proton-coupled amino acid transporter 3	AT3G11900.1	aromatic and neutral transporter 1 	LOC_Os07g12770.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g125640.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18500.1.A1_at	B	B1S	POPTR_0008s01950	POPTR_0008s01950 (7:291)	scaffold_8:929066-931457(-) (10)	NA	NA	NA	AT3G52060.2	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g44580.3	"DNA binding protein, putative, expressed"	Medtr1g060360.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.18502.1.A1_at	B	B3S	POPTR_0013s10720	POPTR_0013s10660 (1:491)//POPTR_0013s10720 (3:274)//POPTR_0013s10670 (0:18)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.18525.1.A1_at	B	B1S	POPTR_0004s06520	POPTR_0004s06520 (0:2402)	NA	NA	O81028	"Pentatricopeptide repeat-containing protein At2g26790, mitochondrial"	AT2G26790.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g43080.1	"PPR repeat domain containing protein, putative"	Medtr3g123920.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18529.1.A1_at	B	B1A	POPTR_0013s00320	POPTR_0013s00320 (3:156)	scaffold_13:104131-104557(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18538.3.S1_at	B	B1S	POPTR_0005s12030	POPTR_0005s12030 (8:440)	NA	NA	NA	NA	AT3G51050.1	FG-GAP repeat-containing protein 	LOC_Os02g01070.1	"FG-GAP repeat-containing protein, putative, expressed"	Medtr5g021050.1	FG-GAP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18558.1.A1_at	B	B1A	POPTR_0019s06160	POPTR_0019s06160 (2:581)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1860.1.S1_at	B	B1S	POPTR_0016s05590	POPTR_0016s05590 (6:84)	NA	NA	Q96B26	Exosome complex exonuclease RRP43	AT1G60080.1	3'-5'-exoribonuclease family protein 	LOC_Os11g20689.1	"exosome complex exonuclease, putative, expressed"	Medtr1g008100.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.18616.1.A1_at	B	B1S	POPTR_0001s40710	POPTR_0001s40710 (3:221)	scaffold_1:40303010-40303746(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.18716.4.S1_at	B	B1S	POPTR_0002s06310	POPTR_0002s06310 (6:869)	NA	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.18719.4.A1_at	B	B1S	POPTR_0004s06940	POPTR_0004s06940 (7:707)	NA	NA	Q9CX34	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1873.2.A1_at	B	B1S	POPTR_0001s42250	POPTR_0001s42250 (8:499)	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18735.1.A1_at	B	B1S	POPTR_0012s09720	POPTR_0012s09720 (4:231)	NA	NA	Q08480	Adenylate kinase B	AT5G63400.1	adenylate kinase 1 	LOC_Os11g20790.1	"adenylate kinase, putative, expressed"	Medtr8g109570.1	Adenylate kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18783.1.A1_at	B	B1S	POPTR_0005s06990	POPTR_0005s06990 (6:378)	scaffold_5:4684460-4684976(-) (11)	NA	Q38967	Amino acid permease 2	AT5G09220.1	amino acid permease 2 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.188.1.S1_at	B	B1S	POPTR_0005s09590	POPTR_0005s09590 (7:689)	NA	NA	Q9NZJ4	Sacsin	AT5G23110.1	"Zinc finger, C3HC4 type (RING finger) family protein "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18805.1.S1_at	B	B1S	POPTR_0013s11120	POPTR_0013s11120 (5:456)	NA	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65110.1	"POT family protein, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.18811.2.A1_at	B	B2S	POPTR_0010s09840	POPTR_0683s00200 (6:1261)//POPTR_0010s09840 (6:214)	NA	NA	A6LL96	5'-nucleotidase surE	AT4G14930.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os07g10460.1	"5-nucleotidase surE, putative, expressed"	Medtr1g132450.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.18825.2.A1_at	B	B1S	POPTR_0004s11260	POPTR_0004s11260 (5:83)	NA	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18862.1.A1_at	B	B1S	POPTR_0003s05430	POPTR_0003s05430 (8:362)	scaffold_3:6694151-6694663(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g021730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.18867.1.A1_at	B	B1A	POPTR_0003s14520	POPTR_0003s14520 (3:555)	NA	NA	Q944Q0	Serine/threonine-protein kinase WNK8	AT5G41990.1	with no lysine (K) kinase 8 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr3g109240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.18890.2.S1_at	B	B2S	POPTR_0001s29930	POPTR_0001s29930 (5:301)//POPTR_0001s29920 (4:223)	scaffold_1:28504403-28510263(+) (9)	NA	Q9LJN2	Magnesium transporter MRS2-3	AT3G19640.1	magnesium transporter 4 	LOC_Os01g68040.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr5g005440.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18907.1.A1_at	B	B1S	POPTR_0007s11470	POPTR_0007s11470 (8:31)	NA	NA	Q9FGT7	Two-component response regulator ARR18	AT4G37180.1	Homeodomain-like superfamily protein 	LOC_Os03g55590.1	"MYB family transcription factor, putative, expressed"	Medtr5g017970.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18931.1.A1_at	B	B2S	POPTR_0006s14470	POPTR_0006s14470 (2:574)//POPTR_0006s14480 (1:96)	scaffold_6:11817006-11819996(-) (9)	NA	NA	NA	AT1G80190.1	partner of SLD five 1 	LOC_Os05g37980.1	"PSF1 - Putative GINS complex subunit, expressed"	Medtr3g012640.1	"GINS complex, Psf1 component "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.18966.1.A1_at	B	B1S	POPTR_0004s14120	POPTR_0004s14120 (4:341)	NA	NA	P80318	T-complex protein 1 subunit gamma	AT5G26360.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g34690.1	"T-complex protein, putative, expressed"	Medtr2g015240.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.18976.1.A1_at	B	B1S	POPTR_0009s03240	POPTR_0009s03240 (0:148)	NA	NA	Q9LX82	Transcription factor MYB48	AT3G46130.1	myb domain protein 48 	LOC_Os11g47460.1	"MYB family transcription factor, putative, expressed"	Medtr2g114450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.190.1.S1_at	B	B1S	POPTR_0001s40100	POPTR_0001s40100 (8:766)	NA	NA	Q96T60	Bifunctional polynucleotide phosphatase/kinase	AT3G14890.2	phosphoesterase 	LOC_Os01g53560.1	"phosphoesterase, putative, expressed"	AC229727_17.1	"Zinc finger, PARP-type; DNA 3-phosphatase; AC229727.6 66418-55685 H EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.19046.1.S1_at	B	B1S	POPTR_0005s25200	POPTR_0005s25200 (7:406)	scaffold_5:23527652-23528106(-) (11)	NA	P45350	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr4g096210.1	Thymidylate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006545|glycine biosynthetic process||GO:0009165|nucleotide biosynthetic process	GO:0004146|dihydrofolate reductase activity	NA
PtpAffx.19046.3.S1_at	B	B1S	POPTR_0005s25200	POPTR_0005s25200 (8:269)	scaffold_5:23508662-23508974(-) (11)	NA	P45350	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr4g096210.1	Thymidylate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006545|glycine biosynthetic process||GO:0009165|nucleotide biosynthetic process	GO:0004146|dihydrofolate reductase activity	NA
PtpAffx.19062.1.S1_at	B	B1S	POPTR_0004s18320	POPTR_0004s18320 (5:226)	NA	NA	Q14498	RNA-binding protein 39	AT2G16940.2	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.19082.1.S1_at	B	B1S	POPTR_0006s10170	POPTR_0006s10170 (0:319)	NA	NA	Q54GB2	CTD small phosphatase-like protein 2	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19128.1.S1_at	B	B2S	POPTR_0008s02810	POPTR_0008s02810 (1:590)//POPTR_0008s02820 (0:503)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19327.1.S1_at	B	B1S	POPTR_0006s15630	POPTR_0006s15630 (4:1361)	NA	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1933.1.A1_at	B	B1S	POPTR_0001s22040	POPTR_0001s22040 (7:318)	scaffold_1:20641552-20642010(+) (10)	NA	P93231	Vacuolar protein sorting-associated protein 41 homolog	AT1G08190.1	vacuolar protein sorting 41 	LOC_Os04g11880.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	NA
PtpAffx.1935.1.S1_at	B	B1S	POPTR_0014s13410	POPTR_0014s13410 (7:356)	scaffold_14:9867360-9867845(-) (9)	NA	Q6NTT6	Mitochondrial ubiquitin ligase activator of nfkb 1	AT1G63900.1	E3 Ubiquitin ligase family protein 	LOC_Os07g45350.2	"zinc finger, RING-type, putative, expressed"	Medtr1g111550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1941.1.S1_a_at	B	B1S	POPTR_0002s24340	POPTR_0002s24340 (3:94)	NA	NA	Q8LBL5	E3 ubiquitin-protein ligase PRT1	AT3G24800.1	proteolysis 1 	LOC_Os02g40810.1	"Zinc finger, ZZ type domain containing protein, expressed"	Medtr7g064490.1	"Zinc finger, ZZ-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19543.2.S1_at	B	B1S	POPTR_0001s41830	POPTR_0001s41830 (8:1598)	NA	NA	Q94AS9	Cyclic nucleotide-gated ion channel 4	AT5G54250.2	cyclic nucleotide-gated cation channel 4 	LOC_Os01g57370.1	"cyclic nucleotide-gated ion channel 2, putative, expressed"	Medtr2g095430.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.1955.1.S1_at	B	B1S	POPTR_0010s24770	POPTR_0010s24770 (7:508)	NA	NA	Q0WMY5	"Pentatricopeptide repeat-containing protein At5g04810, chloroplastic"	AT5G04810.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os04g58780.1	"pentatricopeptide repeat protein, putative, expressed"	Medtr6g089570.1	"TonB box, N-terminal "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.19573.1.A1_at	B	B1S	POPTR_0006s05330	POPTR_0006s05330 (4:624)	scaffold_6:3757522-3758285(-) (10)	NA	Q60560	DNA-binding protein SMUBP-2	AT2G03270.1	"DNA-binding protein, putative "	LOC_Os03g38990.1	"DNA-binding protein, putative, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19592.1.S1_at	B	B1S	POPTR_0012s08230	POPTR_0012s08230 (2:811)	NA	NA	Q9XFS9	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic"	AT5G62790.2	1-deoxy-D-xylulose 5-phosphate reductoisomerase 	LOC_Os01g01710.1	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed"	Medtr8g125620.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase; ; 	GO:0055114|oxidation reduction||GO:0008299|isoprenoid biosynthetic process	GO:0030604|1-deoxy-D-xylulose-5-phosphate reductoisomerase activity||GO:0046872|metal ion binding	NA
PtpAffx.19592.4.S1_at	B	B1S	POPTR_0015s08740	POPTR_0015s08740 (1:485)	NA	NA	Q9XFS9	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic"	AT5G62790.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase 	LOC_Os01g01710.1	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed"	Medtr8g125620.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase; ; 	GO:0055114|oxidation reduction||GO:0008299|isoprenoid biosynthetic process	GO:0030604|1-deoxy-D-xylulose-5-phosphate reductoisomerase activity||GO:0046872|metal ion binding	NA
PtpAffx.19596.1.S1_at	B	B1S	POPTR_0004s22250	POPTR_0004s22250 (5:306)	scaffold_4:21165969-21166604(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19598.1.S1_s_at	B	B1S	POPTR_0009s14520	POPTR_0009s14520 (1:556)	NA	NA	Q4V8J4	Glycerol-3-phosphate acyltransferase 3	AT5G60620.1	glycerol-3-phosphate acyltransferase 9 	LOC_Os07g34730.1	"acyltransferase, putative, expressed"	Medtr8g129160.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.19676.1.S1_at	B	B5S	POPTR_0014s02060	POPTR_0014s02060 (5:1343)//POPTR_0458s00200 (5:979)//POPTR_0458s00210 (5:954)//POPTR_0014s02080 (5:954)//POPTR_0014s02070 (3:918)	NA	NA	Q9FG65	Cytochrome P450 81D1	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.1968.1.S1_at	B	B1S	POPTR_0008s04310	POPTR_0008s04310 (6:411)	scaffold_8:2410750-2411370(+) (11)	NA	Q3ZBN8	Mitochondrial import inner membrane translocase subunit TIM14	AT2G35795.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g09450.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.19700.2.A1_at	B	B1S	POPTR_0002s03100	POPTR_0002s03100 (8:615)	NA	NA	B8E0B2	GTPase obg	AT5G18570.1	GTP1/OBG family protein 	LOC_Os03g58540.1	"spo0B-associated GTP-binding protein, putative, expressed"	Medtr1g028590.1	GTP1/OBG domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.19725.1.S1_at	B	B1S	POPTR_0005s16350	POPTR_0005s16350 (7:320)	scaffold_5:13057548-13061368(-) (10)	NA	NA	NA	AT1G36380.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g34730.1	"transposon protein, putative, Mariner sub-class, expressed"	Medtr5g071770.1	"electron carrier/ ubiquinol-cytochrome-c reductase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19782.1.S1_at	B	B1S	POPTR_0013s02630	POPTR_0013s02630 (4:652)	NA	NA	O60291	E3 ubiquitin-protein ligase MGRN1	AT3G06140.1	RING/U-box superfamily protein 	LOC_Os05g33000.2	"E3 ubiquitin-protein ligase MGRN1, putative, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19855.1.S1_at	B	B1S	POPTR_0005s01440	POPTR_0005s01440 (6:477)	NA	NA	Q9FXA9	Putative pentatricopeptide repeat-containing protein At1g56570	AT1G56570.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g19380.1	"pentatricopeptide, putative"	Medtr1g102670.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.19887.1.S1_at	B	B1S	POPTR_0004s03900	POPTR_0004s03900 (7:197)	NA	NA	Q8LDR0	Dof zinc finger protein DOF5.4	AT5G60850.1	OBF binding protein 4 	LOC_Os02g49440.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g015060.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.199.1.S1_at	B	B1S	POPTR_0018s13950	POPTR_0018s13950 (7:865)	NA	NA	Q9SK86	Alcohol dehydrogenase-like 1	AT1G22430.2	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os07g42924.1	"dehydrogenase, putative, expressed"	Medtr5g048350.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.19937.1.S1_at	B	B1S	POPTR_0005s02620	POPTR_0005s02620 (4:363)	NA	NA	NA	NA	AT1G56210.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os05g05820.1	"pro-resilin precursor, putative, expressed"	Medtr8g138820.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.19949.1.S1_at	B	B1S	POPTR_0006s22890	POPTR_0006s22890 (8:180)	NA	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT3G52660.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g127590.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.200009.1.S1_at	B	B1A	POPTR_0001s03850	POPTR_0001s03850 (7:576)	scaffold_1:3109428-3110058(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20004.1.S1_at	B	B1S	POPTR_0001s07200	POPTR_0001s07200 (8:283)	NA	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200048.1.S1_at	B	B1S	POPTR_0001s04680	POPTR_0001s04680 (5:280)	scaffold_1:3625598-3630035(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200082.1.S1_s_at	B	B2S	POPTR_0316s00230	POPTR_0316s00230 (8:31)//POPTR_0886s00200 (8:31)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20011.1.S1_at	B	B1S	POPTR_0011s02720	POPTR_0011s02720 (7:478)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g098540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200122.1.S1_at	B	B1S	POPTR_0001s06780	POPTR_0001s06780 (7:275)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200131.1.S1_at	B	B1S	POPTR_0001s06480	POPTR_0001s06480 (8:1366)	scaffold_1:4996902-4998362(-) (10)	NA	Q9FRS6	Leucine-rich repeat receptor-like protein kinase PXL1	AT5G27060.1	receptor like protein 53 	LOC_Os10g22890.1	"receptor-like kinase, putative, expressed"	Medtr5g026140.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.200136.1.S1_at	B	B1A	POPTR_0001s06410	POPTR_0001s06410 (5:98)	scaffold_1:4905736-4906006(-) (11)	NA	Q6NLV4	Flowering time control protein FY	AT5G13480.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g72220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g039570.1	"WD repeat-containing protein 33, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200137.1.S1_at	B	B1S	POPTR_0001s06380	POPTR_0001s06380 (7:380)	scaffold_1:4892086-4892580(+) (10)	NA	NA	NA	AT2G11890.1	adenylate cyclases 	LOC_Os08g20400.1	"adenylate cyclase family protein, expressed"	Medtr8g122230.1	Adenylate cyclase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200142.1.S1_at	B	B2S	POPTR_0001s06230	POPTR_0003s19970 (0:937)//POPTR_0001s06230 (7:757)	scaffold_1:4804629-4805471(-) (9)	NA	P51074	Annexin-like protein RJ4	AT5G12380.1	annexin 8 	LOC_Os02g51750.1	"annexin, putative, expressed"	Medtr3g020370.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.200147.1.S1_at	B	B1S	POPTR_0001s06150	POPTR_0001s06150 (6:1809)	NA	NA	NA	NA	AT2G38800.1	Plant calmodulin-binding protein-related 	LOC_Os05g31690.1	expressed protein	Medtr3g021660.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200162.1.S1_at	B	B3S	POPTR_0017s05120	POPTR_0017s09490 (7:79)//POPTR_0017s05120 (7:79)//POPTR_0017s05060 (3:79)	NA	NA	Q0JC27	Protein NLP2	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200162.1.S1_x_at	B	B3S	POPTR_0017s05120	POPTR_0017s09490 (7:79)//POPTR_0017s05120 (7:79)//POPTR_0017s05060 (4:79)	NA	NA	Q0JC27	Protein NLP2	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200198.1.S1_at	B	B1S	POPTR_0001s14540	POPTR_0001s14540 (7:430)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200206.1.S1_at	B	B1S	POPTR_0001s14250	POPTR_0001s14250 (5:169)	scaffold_1:11202691-11203345(+) (10)	NA	Q6TPH1	Purple acid phosphatase 23	AT4G13700.1	purple acid phosphatase 23 	LOC_Os08g17784.2	"purple acid phosphatase, putative, expressed"	Medtr6g013550.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200209.1.S1_at	B	B2S	POPTR_0001s14200	POPTR_0003s17410 (0:371)//POPTR_0001s14200 (7:365)	scaffold_1:11151156-11151608(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200228.1.S1_at	B	B1S	POPTR_0001s13840	POPTR_0001s13840 (7:102)	NA	NA	NA	NA	NA	NA	LOC_Os11g29630.1	expressed protein	Medtr3g150560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200230.1.S1_at	B	B1S	POPTR_0001s13820	POPTR_0001s13820 (8:1118)	scaffold_1:10900105-10901182(-) (9)	NA	Q9SA98	Alpha-ketoglutarate-dependent dioxygenase alkB	AT1G11780.1	"oxidoreductase, 2OG-Fe(II) oxygenase family protein "	LOC_Os11g29690.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr3g103890.1	"Alkylated DNA repair protein alkB homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200248.1.S1_at	B	B1S	POPTR_0001s13320	POPTR_0001s13320 (5:1084)	scaffold_1:10408583-10410046(+) (9)	NA	Q9XIC7	Somatic embryogenesis receptor kinase 2	AT1G34210.1	somatic embryogenesis receptor-like kinase 2 	LOC_Os11g31530.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative"	Medtr2g008510.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.200251.1.S1_at	B	B1S	POPTR_0001s13230	POPTR_0001s13230 (8:522)	scaffold_1:10330650-10331237(-) (11)	NA	Q9LYV3	"Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial"	AT5G13230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g32620.1	"pentatricopeptide, putative, expressed"	Medtr5g103280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200255.1.S1_at	B	B1S	POPTR_0001s13190	POPTR_0001s13190 (8:1014)	scaffold_1:10280701-10281715(+) (9)	NA	Q93W88	Transcription factor bHLH137	AT5G50915.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g42470.1	"BEE 1, putative, expressed"	Medtr4g152040.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.200343.1.S1_at	B	B1S	POPTR_0001s11230	POPTR_0001s11230 (7:505)	NA	NA	O82486	N6-adenosine-methyltransferase MT-A70-like	AT4G10760.1	mRNAadenosine methylase 	LOC_Os02g45110.1	"MT-A70 domain containing protein, expressed"	Medtr4g158130.1	MT-A70 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008168|methyltransferase activity	NA
PtpAffx.200354.1.S1_at	B	B1S	POPTR_0001s10910	POPTR_0001s10910 (7:475)	scaffold_1:8474167-8474910(+) (10)	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.2	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200386.1.S1_at	B	B1S	POPTR_0001s10260	POPTR_0001s10260 (2:1171)	NA	NA	Q94F27	"Probable beta-1,3-galactosyltransferase 11"	AT5G53340.2	Galactosyltransferase family protein 	LOC_Os08g29710.1	"galactosyltransferase family protein, putative, expressed"	Medtr3g124840.1	"Glycosyl transferase, family 31 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2004.1.A1_at	B	B1S	POPTR_0006s04600	POPTR_0006s04600 (7:604)	NA	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT4G20990.1	alpha carbonic anhydrase 4 	LOC_Os08g36630.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200404.1.S1_at	B	B1S	POPTR_0001s09910	POPTR_0001s09910 (5:692)	NA	NA	P22503	Endoglucanase	AT4G09740.1	glycosyl hydrolase 9B14 	LOC_Os08g29770.1	"endoglucanase, putative, expressed"	Medtr5g010040.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.20043.1.S1_at	B	B1S	POPTR_0010s23380	POPTR_0010s23380 (8:2394)	NA	NA	Q93YU5	Probable exocyst complex component 4	AT3G10380.1	subunit of exocyst complex 8 	LOC_Os08g22864.1	"sec8 exocyst complex component specific domain containing protein, expressed"	Medtr5g017660.1	hypothetical protein 	GO:0006904|vesicle docking during exocytosis||GO:0015031|protein transport	NA	GO:0000145|exocyst
PtpAffx.200451.1.S1_at	B	B2S	POPTR_0001s08830	POPTR_0001s08830 (4:962)//POPTR_0003s12210 (1:941)	scaffold_1:6743463-6744444(-) (11)	NA	NA	NA	AT4G26965.1	"NADH:ubiquinone oxidoreductase, 17.2kDa subunit "	LOC_Os09g32430.1	"oxidoreductase, putative, expressed"	Medtr3g068850.1	NADH:ubiquinone oxidoreductase 17.2 kD subunit 	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity||GO:0009055|electron carrier activity	GO:0016020|membrane
PtpAffx.200451.1.S1_x_at	B	B2S	POPTR_0001s08830	POPTR_0001s08830 (5:962)//POPTR_0003s12210 (2:941)	scaffold_1:6743463-6744444(-) (10)	NA	NA	NA	AT4G26965.1	"NADH:ubiquinone oxidoreductase, 17.2kDa subunit "	LOC_Os09g32430.1	"oxidoreductase, putative, expressed"	Medtr3g068850.1	NADH:ubiquinone oxidoreductase 17.2 kD subunit 	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity||GO:0009055|electron carrier activity	GO:0016020|membrane
PtpAffx.200483.1.S1_at	B	B1S	POPTR_0001s16940	POPTR_0001s16940 (3:195)	NA	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT1G48120.1	hydrolases;protein serine/threonine phosphatases 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200490.1.S1_at	B	B2S	POPTR_0001s17130	POPTR_0003s06110 (0:516)//POPTR_0001s17130 (6:191)	scaffold_1:13999435-13999951(+) (11)	NA	Q8GW57	"Pentatricopeptide repeat-containing protein At1g80150, mitochondrial"	AT1G80150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200495.1.S1_at	B	B1S	POPTR_0001s17370	POPTR_0001s17370 (4:258)	scaffold_1:14172776-14173115(-) (11)	NA	P00428	"Cytochrome c oxidase subunit 5B, mitochondrial"	AT1G80230.1	Rubredoxin-like superfamily protein 	LOC_Os06g05080.1	"cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed"	Medtr2g125770.1	"Cytochrome c oxidase, subunit Vb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005740|mitochondrial envelope
PtpAffx.200515.1.S1_at	B	B1S	POPTR_0001s17710	POPTR_0001s17710 (6:224)	scaffold_1:14555127-14555413(-) (11)	NA	Q9SEX2	Katanin p60 ATPase-containing subunit	AT1G80350.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g49000.1	"katanin p60 ATPase-containing subunit, putative, expressed"	Medtr4g165730.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.200515.1.S1_x_at	B	B1S	POPTR_0001s17710	POPTR_0001s17710 (6:224)	scaffold_1:14555127-14555413(-) (11)	NA	Q9SEX2	Katanin p60 ATPase-containing subunit	AT1G80350.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g49000.1	"katanin p60 ATPase-containing subunit, putative, expressed"	Medtr4g165730.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.200517.1.S1_at	B	B1S	POPTR_0001s17750	POPTR_0001s17750 (7:500)	scaffold_1:14613195-14613763(+) (10)	NA	Q944I4	"D-glycerate 3-kinase, chloroplastic"	AT1G80380.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g48990.1	"uncharacterized kinase mug58, putative, expressed"	Medtr2g123430.2	"Uncharacterized kinase mug58, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20052.1.S1_at	B	B1S	POPTR_0008s07700	POPTR_0008s07700 (8:395)	NA	NA	Q6DCG9	Probable UDP-sugar transporter protein SLC35A5	AT3G59360.2	UDP-galactose transporter 6 	LOC_Os04g41320.1	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr1g146890.1	Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
PtpAffx.200534.1.S1_x_at	B	B9S	POPTR_0011s02690	POPTR_0001s18480 (1:247)//POPTR_0009s05880 (6:237)//POPTR_0011s02690 (8:236)//POPTR_0225s00210 (7:232)//POPTR_0018s04940 (0:185)//POPTR_0001s27340 (0:139)//POPTR_0002s22010 (0:95)//POPTR_0278s00220 (1:63)//POPTR_0005s26060 (0:53)	scaffold_1:5455931-5455995(-) (9)//scaffold_1:15004129-15004376(+) (11)//scaffold_1:23306750-23306971(-) (9)//scaffold_1:46146224-46146445(+) (9)//scaffold_10:1968095-1968159(-) (9)//scaffold_16:1625779-1625843(+) (9)//scaffold_16:8894857-8895104(+) (10)//scaffold_19:6342608-6342672(+) (9)//scaffold_19:9923701-9923765(-) (9)//scaffold_31:319561-319625(-) (9)//scaffold_4:4739741-4739805(+) (9)//scaffold_520:13887-13951(-) (9)//scaffold_6:16643660-16643906(+) (10)//scaffold_670:10440-10504(+) (9)//scaffold_7:10898365-10898429(+) (9)//scaffold_8:15982974-15983038(+) (9)//scaffold_9:4917628-4917692(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200539.1.S1_at	B	B8S	POPTR_0001s23060	POPTR_0001s23060 (0:200)//POPTR_0001s23120 (0:199)//POPTR_0001s23130 (0:199)//POPTR_0001s23090 (0:198)//POPTR_0002s21830 (0:197)//POPTR_0001s23110 (0:197)//POPTR_0001s23100 (0:197)//POPTR_0613s00200 (0:197)	NA	NA	Q5Z9Z0	Beta-glucosidase 24	AT3G60120.1	beta glucosidase 27 	LOC_Os04g39864.4	"Os4bglu11 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr3g040460.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.200547.1.S1_at	B	B1S	POPTR_0001s23210	POPTR_0001s23210 (2:668)	scaffold_1:22492067-22496166(-) (9)	NA	P44747	Tyrosine-specific transport protein 2	AT5G19500.1	Tryptophan/tyrosine permease 	LOC_Os07g46780.1	"tyrosine-specific transport protein, putative, expressed"	Medtr5g095820.1	Aromatic amino acid permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200557.1.S1_at	B	B1S	POPTR_0001s22120	POPTR_0001s22120 (8:243)	NA	NA	Q9SJK3	Argonaute-like protein At2g27880	AT2G27880.1	Argonaute family protein 	LOC_Os03g58600.1	"PAZ domain containing protein, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200576.1.S1_x_at	B	B1S	POPTR_0011s09780	POPTR_0011s09780 (4:758)	scaffold_1:20132257-20133021(-) (10)	NA	Q9NXF1	Testis-expressed sequence 10 protein	AT5G06350.1	ARM repeat superfamily protein 	LOC_Os04g39220.1	expressed protein	Medtr5g027520.1	"Rad51, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200582.1.S1_at	B	B2S	POPTR_0001s21490	POPTR_0001s21490 (7:352)//POPTR_0003s01670 (0:352)	NA	NA	Q6FK48	Helicase SWR1	AT3G12810.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os02g46450.2	"helicase conserved C-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.200601.1.S1_at	B	B1A	POPTR_0001s21030	POPTR_0001s21030 (1:26)	NA	NA	Q8T295	Pre-mRNA-processing-splicing factor 8 homolog	AT1G80070.1	Pre-mRNA-processing-splicing factor 	LOC_Os06g07080.1	"pre-mRNA-processing-splicing factor 8, putative, expressed"	Medtr2g126650.1	"Mov34/MPN/PAD-1; PRO8NT; PROCN; PRO, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200604.1.S1_at	B	B1S	POPTR_0006s11170	POPTR_0006s11170 (4:429)	scaffold_1:19330596-19331025(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200604.1.S1_x_at	B	B1S	POPTR_0006s11170	POPTR_0006s11170 (5:462)	scaffold_1:19330561-19331023(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200629.1.S1_x_at	B	B5A	POPTR_0002s25460	POPTR_0002s25460 (6:482)//POPTR_0017s09375 (5:471)//POPTR_0016s09920 (0:356)//POPTR_0010s01520 (0:300)//POPTR_0001s18520 (1:300)	scaffold_1:15579153-15579536(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200637.1.S1_at	B	B1S	POPTR_0001s18710	POPTR_0001s18710 (7:317)	scaffold_1:15849797-15850295(-) (11)	NA	Q9LW63	Putative pentatricopeptide repeat-containing protein At3g23330	AT3G23330.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g39090.1	"pentatricopeptide repeat domain containing protein, putative"	Medtr4g134960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200640.1.S1_at	B	B1S	POPTR_0001s18760	POPTR_0001s18760 (7:1348)	NA	NA	Q9C5H4	VHS domain-containing protein At3g16270	AT3G16270.1	ENTH/VHS family protein 	LOC_Os01g13160.1	expressed protein	Medtr8g015210.1	VHS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200681.1.S1_at	B	B2S	POPTR_0001s22320	POPTR_0009s02200 (2:1026)//POPTR_0001s22320 (7:843)	NA	NA	Q9SJF0	Serine/threonine-protein phosphatase BSL2	AT1G08420.1	BRI1 suppressor 1 (BSU1)-like 2 	LOC_Os12g42310.1	"serine/threonine-protein phosphatase BSL2, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.200690.1.S1_at	B	B1S	POPTR_0001s22460	POPTR_0001s22460 (8:487)	scaffold_1:21235766-21236277(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200725.1.S1_at	B	B1S	POPTR_0001s26090	POPTR_0001s26090 (8:1325)	scaffold_1:25184180-25185446(+) (9)	NA	C0ZIY1	Pseudouridine-5'-phosphate glycosidase	AT1G50510.1	indigoidine synthase A family protein 	LOC_Os08g39420.2	"uncharacterized protein yeiN, putative, expressed"	Medtr4g032300.1	Indigoidine synthase A like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200752.1.S1_at	B	B1S	POPTR_0001s25540	POPTR_0001s25540 (8:1399)	scaffold_1:24612831-24616510(-) (11)	NA	NA	NA	AT2G29590.1	Thioesterase superfamily protein 	NA	NA	Medtr5g078190.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200755.1.S1_at	B	B1S	POPTR_0001s25460	POPTR_0001s25460 (8:1950)	NA	NA	Q304B9	Neutral ceramidase	AT1G07380.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200763.1.S1_at	B	B1S	POPTR_0001s25240	POPTR_0001s25240 (7:315)	scaffold_1:24420756-24421295(-) (11)	NA	Q9STF3	"Pentatricopeptide repeat-containing protein At3g46790, chloroplastic"	AT3G46790.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g62910.1	"CRR2, putative, expressed"	Medtr7g015110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200780.1.S1_x_at	B	B2S	POPTR_0001s24940	POPTR_0009s03900 (0:3390)//POPTR_0001s24940 (7:2150)	scaffold_1:24200196-24203942(-) (11)	NA	O81077	Abscisic acid 8'-hydroxylase 2	AT2G29090.2	"cytochrome P450, family 707, subfamily A, polypeptide 2 "	LOC_Os02g47470.1	"cytochrome P450, putative, expressed"	Medtr5g025670.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.200805.1.S1_at	B	B1S	POPTR_0001s24110	POPTR_0001s24110 (5:2180)	NA	NA	Q8VYR2	Nudix hydrolase 9	AT3G46200.1	nudix hydrolase homolog 9 	LOC_Os05g02640.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g079320.1	NUDIX hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200809.1.S1_x_at	B	B1S	POPTR_0001s26690	POPTR_0001s26690 (4:725)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.200839.1.S1_at	B	B1S	POPTR_0001s26840	POPTR_0001s26840 (8:1297)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200842.1.S1_at	B	B1A	POPTR_0001s26890	POPTR_0001s26890 (6:870)	scaffold_1:25878447-25880211(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200851.1.S1_at	B	B1S	POPTR_0001s27010	POPTR_0001s27010 (8:307)	scaffold_1:25977146-25977498(+) (11)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27660.3	"OsFBO21 - F-box and other domain containing protein, expressed"	Medtr8g043140.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200854.1.S1_at	B	B1S	POPTR_0001s27070	POPTR_0001s27070 (8:480)	scaffold_1:26022922-26023495(-) (11)	NA	Q9SCP4	Pentatricopeptide repeat-containing protein At3g53170	AT3G53170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g02430.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g039890.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200877.1.S1_at	B	B1S	POPTR_0001s27840	POPTR_0001s27840 (8:509)	scaffold_1:26719884-26723080(+) (10)	NA	P82277	"30S ribosomal protein 2, chloroplastic"	AT3G52150.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200881.1.S1_at	B	B1S	POPTR_0001s27940	POPTR_0001s27940 (7:809)	scaffold_1:26773091-26774230(-) (11)	NA	Q9LS72	Pentatricopeptide repeat-containing protein At3g29230	AT3G29230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g15460.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200890.1.S1_at	B	B1S	POPTR_0001s28190	POPTR_0001s28190 (8:529)	scaffold_1:26954233-26955075(-) (10)	NA	Q9SUD8	Pentatricopeptide repeat-containing protein At4g28010	AT4G28010.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g42880.1	"PPR repeat containing protein, expressed"	Medtr3g024680.1	Chaperonin Cpn60/TCP-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200898.1.S1_at	B	B1S	POPTR_0001s28365	POPTR_0001s28365 (0:283)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g102750.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.200914.1.S1_at	B	B1S	POPTR_0001s28770	POPTR_0001s28770 (8:758)	scaffold_1:27551783-27552541(+) (9)	NA	NA	NA	AT5G58510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g18440.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200940.1.S1_at	B	B2S	POPTR_0001s34800	POPTR_0001s34800 (7:927)//POPTR_0001s34790 (2:116)	scaffold_1:33027012-33030229(-) (9)	NA	Q9LFQ3	Paired amphipathic helix protein Sin3-like 2	AT5G15020.2	SIN3-like 2 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr6g009610.1	"Paired amphipathic helix protein Sin3, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.200949.1.S1_at	B	B1S	POPTR_0001s34960	POPTR_0001s34960 (2:72)	NA	NA	O22609	"Protease Do-like 1, chloroplastic"	AT3G27925.1	DegP protease 1 	LOC_Os05g49380.2	"OsDegp9 - Putative Deg protease homologue, expressed"	Medtr6g006560.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.200971.1.S1_at	B	B1S	POPTR_0001s35330	POPTR_0001s35330 (5:104)	scaffold_1:33694805-33697244(+) (10)	NA	P11654	Nuclear pore membrane glycoprotein 210	AT5G40480.1	embryo defective 3012 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2010.1.A1_at	B	B1S	POPTR_0001s10400	POPTR_0001s10400 (6:448)	NA	NA	NA	NA	AT4G11090.1	TRICHOME BIREFRINGENCE-LIKE 23 	LOC_Os05g12380.1	expressed protein	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201042.1.S1_at	B	B1S	POPTR_0001s33820	POPTR_0001s33820 (5:235)	scaffold_1:31981366-31981846(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.2	Inorganic H pyrophosphatase family protein 	LOC_Os06g43660.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201053.1.S1_at	B	B1S	POPTR_0001s33490	POPTR_0001s33490 (8:476)	NA	NA	Q6R3K6	Probable metal-nicotianamine transporter YSL6	AT3G27020.1	YELLOW STRIPE like 6 	LOC_Os04g32050.1	"transposon protein, putative, unclassified, expressed"	Medtr7g018260.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201070.1.S1_at	B	B2S	POPTR_0001s33090	POPTR_0001s33090 (8:1020)//POPTR_0017s08900 (5:747)	NA	NA	NA	NA	AT5G14020.1	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os11g31570.2	expressed protein	Medtr7g094330.1	BRO1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201077.1.S1_at	B	B1S	POPTR_0001s32950	POPTR_0001s32950 (8:425)	scaffold_1:31220454-31221026(+) (11)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os02g52860.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr7g096810.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201082.1.S1_at	B	B1S	POPTR_0001s32870	POPTR_0001s32870 (8:31)	NA	NA	NA	NA	AT4G14010.1	ralf-like 32 	NA	NA	Medtr4g132720.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201083.1.S1_at	B	B1A	POPTR_0001s32760	POPTR_0001s32760 (3:238)	scaffold_1:31056892-31057439(-) (9)	NA	Q9SL02	DNA repair protein RAD50	AT2G31970.1	DNA repair-recombination protein (RAD50) 	LOC_Os02g29464.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	Medtr3g104840.1	Rad50 zinc hook 	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0016032|viral reproduction	GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0008270|zinc ion binding	NA
PtpAffx.201099.1.S1_s_at	B	B1S	POPTR_0001s32400	POPTR_0001s32400 (6:200)	NA	NA	Q8R3D1	TBC1 domain family member 13	AT4G13730.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g68010.1	"TBC domain containing protein, expressed"	Medtr3g105370.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.201105.1.S1_at	B	B3S	POPTR_2568s00200	POPTR_2568s00200 (8:561)//POPTR_0007s08230 (1:450)//POPTR_0001s32310 (0:13)	scaffold_1:30695208-30695751(-) (9)	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g40450.1	"retrotransposon protein, putative, unclassified"	Medtr4g157510.1	"Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.201117.1.S1_at	B	B1S	POPTR_0001s32020	POPTR_0001s32020 (1:29)	scaffold_1:30456197-30456805(+) (10)	NA	Q3EC97	F-box/LRR-repeat protein 14	AT1G80570.2	RNI-like superfamily protein 	LOC_Os02g55550.1	"F-box/LRR-repeat protein 14, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201124.1.S1_a_at	B	B1S	POPTR_0001s31870	POPTR_0001s31870 (8:61)	scaffold_1:30223577-30225248(+) (10)	NA	Q1DXH0	"Polyadenylate-binding protein, cytoplasmic and nuclear"	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201149.1.S1_at	B	B1S	POPTR_0001s31330	POPTR_0001s31330 (3:287)	scaffold_1:29666860-29667655(-) (10)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT5G63700.1	zinc ion binding;DNA binding 	LOC_Os01g66140.1	"plus-3 domain containing protein, putative, expressed"	Medtr3g086490.1	"SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.201166.1.S1_at	B	B1S	POPTR_0001s30800	POPTR_0001s30800 (7:403)	NA	NA	Q94C77	Receptor protein kinase-like protein At4g34220	AT4G34220.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g02250.1	"transposon protein, putative, unclassified, expressed"	Medtr7g076330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.201198.1.S1_at	B	B2S	POPTR_0001s29990	POPTR_0001s29990 (5:1407)//POPTR_0001s29980 (4:190)	scaffold_1:28553247-28554937(-) (10)	NA	P93039	Nucleobase-ascorbate transporter 4	AT1G49960.1	Xanthine/uracil permease family protein 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g073630.1	Xanthine/uracil/vitamin C permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201228.1.S1_x_at	B	B2S	POPTR_0001s29070	POPTR_0282s00210 (1:575)//POPTR_0001s29070 (2:344)	scaffold_1:27858821-27859388(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201229.1.S1_x_at	B	B1S	POPTR_0001s29100	POPTR_0001s29100 (4:139)	scaffold_1:27810770-27810909(+) (11)	NA	Q40702	MADS-box transcription factor 2	AT2G14210.1	AGAMOUS-like 44 	LOC_Os04g38770.1	OsMADS61 - MADS-box family gene with MIKCc type-box	Medtr2g009970.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.201241.1.S1_at	B	B1S	POPTR_0001s36670	POPTR_0001s36670 (7:2918)	NA	NA	A4VCH4	UPF0505 protein C16orf62 homolog	AT1G50730.1	unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). 	NA	NA	Medtr1g149750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201250.1.S1_at	B	B1S	POPTR_0001s36800	POPTR_0001s36800 (6:537)	NA	NA	NA	NA	AT2G34680.1	Outer arm dynein light chain 1 protein 	LOC_Os07g05470.1	"AIR9 protein, putative, expressed"	Medtr2g055450.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.201259.1.S1_at	B	B1S	POPTR_0001s36970	POPTR_0001s36970 (2:338)	scaffold_1:35795843-35799147(-) (10)	NA	Q08047	"1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic"	AT3G20440.2	Alpha amylase family protein 	LOC_Os06g26234.2	"1,4-alpha-glucan-branching enzyme, putative, expressed"	Medtr7g126850.1	"Alpha amylase, catalytic region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201259.1.S1_x_at	B	B1S	POPTR_0001s36970	POPTR_0001s36970 (3:338)	scaffold_1:35795843-35799147(-) (10)	NA	Q08047	"1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic"	AT3G20440.2	Alpha amylase family protein 	LOC_Os06g26234.2	"1,4-alpha-glucan-branching enzyme, putative, expressed"	Medtr7g126850.1	"Alpha amylase, catalytic region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201278.1.S1_at	B	B6S	POPTR_0011s01340	POPTR_0011s01755 (0:295)//POPTR_0011s01340 (0:295)//POPTR_0021s00210 (0:290)//POPTR_0011s01870 (0:289)//POPTR_0011s01650 (0:288)//POPTR_0011s01910 (0:248)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g14220.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201333.1.S1_at	B	B1S	POPTR_0001s38610	POPTR_0001s38610 (3:314)	scaffold_1:37801470-37801984(-) (10)	NA	Q9M9V7	Probable peptide/nitrate transporter At1g18880	AT1G18880.1	Major facilitator superfamily protein 	LOC_Os07g09300.1	"retrotransposon protein, putative, unclassified"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201347.1.S1_at	B	B1S	POPTR_0005s18370	POPTR_0005s18370 (0:34)	scaffold_1:38136612-38136646(-) (11)	NA	Q91DM0	Genome polyprotein	AT1G37113.1	unknown protein; LOCATED IN: chloroplast; Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 14; Viruses - 6; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g15720.1	tobamovirus movement protein containing protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201347.1.S1_x_at	B	B1S	POPTR_0005s18370	POPTR_0005s18370 (4:445)	scaffold_1:38136513-38136958(-) (10)	NA	Q91DM0	Genome polyprotein	AT1G37113.1	unknown protein; LOCATED IN: chloroplast; Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 14; Viruses - 6; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g15720.1	tobamovirus movement protein containing protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201356.1.S1_at	B	B1S	POPTR_0001s39170	POPTR_0001s39170 (8:509)	scaffold_1:38367484-38367993(-) (11)	NA	NA	NA	AT3G14750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). 	LOC_Os07g32450.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g071550.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201359.1.S1_at	B	B1S	POPTR_0001s47800	POPTR_0001s47800 (7:429)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201359.1.S1_x_at	B	B1S	POPTR_0001s47800	POPTR_0001s47800 (7:427)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201363.1.S1_at	B	B1S	POPTR_0001s47800	POPTR_0001s47800 (0:490)	scaffold_1:45398002-45398543(-) (10)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.201364.1.S1_at	B	B1S	POPTR_0001s42530	POPTR_0001s42530 (3:577)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g005310.1	NB-ARC; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201364.1.S1_x_at	B	B1S	POPTR_0001s42530	POPTR_0001s42530 (2:577)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g005310.1	NB-ARC; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201386.1.S1_at	B	B1S	POPTR_0001s43310	POPTR_0001s43310 (7:1889)	NA	NA	Q0WTY4	Vacuolar protein sorting-associated protein 2 homolog 2	AT5G44560.1	SNF7 family protein 	LOC_Os03g43860.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	GO:0015031|protein transport	NA	NA
PtpAffx.20139.1.S1_at	B	B1S	POPTR_0005s05220	POPTR_0005s05220 (7:125)	NA	NA	Q05212	DNA-damage-repair/toleration protein DRT102	AT3G04880.1	DNA-damage-repair/toleration protein (DRT102) 	LOC_Os01g36090.1	"DNA-damage-repair/toleration protein DRT102, putative, expressed"	Medtr7g140600.1	Ribose/galactose isomerase; Cupin region 	GO:0005975|carbohydrate metabolic process	NA	NA
PtpAffx.201390.1.S1_at	B	B1S	POPTR_0001s43370	POPTR_0001s43370 (7:1849)	NA	NA	Q5E9Y6	Protein prune homolog	NA	NA	NA	NA	Medtr4g041560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201424.1.S1_s_at	B	B1S	POPTR_0001s45840	POPTR_0001s45840 (3:122)	scaffold_1:46333090-46334695(+) (10)	NA	A1EC95	HEAT repeat-containing protein 6	AT4G38120.1	ARM repeat superfamily protein 	LOC_Os08g05670.1	"HEAT repeat family protein, putative, expressed"	Medtr3g109600.1	"binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201435.1.S1_at	B	B1S	POPTR_0001s46030	POPTR_0001s46030 (6:973)	scaffold_1:46528754-46530266(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g086950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201437.1.S1_at	B	B2S	POPTR_0001s46070	POPTR_0001s46070 (8:2578)//POPTR_0011s14850 (1:1356)	scaffold_1:46555252-46557830(+) (9)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.201450.1.S1_at	B	B1S	POPTR_0001s46450	POPTR_0001s46450 (0:1)	scaffold_1:46826243-46826620(+) (11)	NA	NA	NA	AT4G21105.1	cytochrome-c oxidases;electron carriers 	LOC_Os07g45320.1	"COX VIIa, putative, expressed"	Medtr8g106530.1	"Cytochrome c oxidase, subunit VIIa "	NA	GO:0004129|cytochrome-c oxidase activity||GO:0009055|electron carrier activity	GO:0005746|mitochondrial respiratory chain
PtpAffx.201463.1.S1_at	B	B2S	POPTR_0001s46830	POPTR_0001s46840 (0:14)//POPTR_0001s46830 (0:13)	scaffold_1:47221030-47221073(+) (11)//scaffold_1:47224102-47224145(+) (11)	NA	Q6K5P8	Putative germin-like protein 2-3	AT5G39190.1	germin-like protein 2 	LOC_Os02g29020.1	Cupin domain containing protein	Medtr6g005250.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.201470.1.S1_at	B	B1S	POPTR_0001s46960	POPTR_0001s46960 (6:300)	scaffold_1:47300987-47301336(-) (10)	NA	Q9C5U8	"Histidinol dehydrogenase, chloroplastic"	AT5G63890.2	histidinol dehydrogenase 	LOC_Os01g13190.1	"histidinol dehydrogenase, chloroplast precursor, putative, expressed"	Medtr2g130010.1	Histidinol dehydrogenase 	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004399|histidinol dehydrogenase activity||GO:0051287|NAD or NADH binding||GO:0008270|zinc ion binding	NA
PtpAffx.20148.1.A1_at	B	B1S	POPTR_0019s08330	POPTR_0019s08330 (4:133)	scaffold_19:9830525-9834475(+) (11)	NA	Q6AWX0	D-xylose-proton symporter-like 2	AT5G17010.3	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.20149.1.S1_a_at	B	B1S	POPTR_0010s22470	POPTR_0010s22470 (5:440)	NA	NA	Q9LQR0	LOB domain-containing protein 1	AT1G07900.1	LOB domain-containing protein 1 	LOC_Os03g17810.1	"DUF260 domain containing protein, putative, expressed"	Medtr1g122020.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201490.1.S1_at	B	B1S	POPTR_0001s47530	POPTR_0001s47530 (8:406)	NA	NA	P45816	SEC14 cytosolic factor	AT1G55690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os08g25310.1	"phosphatidylinositol transfer, putative, expressed"	Medtr3g016810.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201493.1.S1_at	B	B1S	POPTR_0001s47590	POPTR_0001s47590 (4:175)	NA	NA	Q9S7N7	"Photosystem I reaction center subunit V, chloroplastic"	AT1G55670.1	photosystem I subunit G 	LOC_Os09g30340.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	Medtr3g016960.1	Photosystem I psaG/psaK protein 	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
PtpAffx.201499.1.S1_at	B	B1S	POPTR_0001s47660	POPTR_0001s47660 (5:145)	NA	NA	Q8RXR2	Chloride channel protein CLC-f	AT1G55620.2	chloride channel F 	LOC_Os08g38980.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr5g106870.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.201499.1.S1_x_at	B	B1S	POPTR_0001s47660	POPTR_0001s47660 (7:328)	NA	NA	Q8RXR2	Chloride channel protein CLC-f	AT1G55620.2	chloride channel F 	LOC_Os08g38980.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr5g106870.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.201500.1.S1_at	B	B1S	POPTR_0001s47710	POPTR_0001s47710 (4:204)	scaffold_1:47878185-47879010(+) (10)	NA	NA	NA	NA	NA	LOC_Os06g20710.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20153.2.S1_a_at	B	B1S	POPTR_0014s17780	POPTR_0014s17780 (8:62)	NA	NA	O64888	"Ribose-phosphate pyrophosphokinase 5, chloroplastic"	AT2G44530.1	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.20153.2.S1_at	B	B1S	POPTR_0014s17780	POPTR_0014s17780 (2:3128)	NA	NA	O64888	"Ribose-phosphate pyrophosphokinase 5, chloroplastic"	AT2G44530.1	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.20153.3.S1_at	B	B1S	POPTR_0014s17780	POPTR_0014s17780 (0:2180)	NA	NA	O64888	"Ribose-phosphate pyrophosphokinase 5, chloroplastic"	AT2G44530.1	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.201544.1.S1_at	B	B1S	POPTR_0002s01020	POPTR_0002s01020 (8:1396)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201551.1.S1_at	B	B1S	POPTR_0002s01150	POPTR_0002s01150 (6:455)	scaffold_2:612572-613404(+) (10)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os02g45280.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201588.1.S1_at	B	B1S	POPTR_0002s01940	POPTR_0002s01940 (6:1612)	scaffold_2:1037260-1040998(+) (10)	NA	Q06364	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G75990.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os08g43640.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.20159.2.S1_at	B	B1S	POPTR_0001s16060	POPTR_0001s16060 (0:1126)	NA	NA	NA	NA	AT1G05780.1	Vacuolar ATPase assembly integral membrane protein VMA21-like domain 	LOC_Os04g52300.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20161.2.A1_at	B	B1S	POPTR_0001s17550	POPTR_0001s17550 (1:307)	NA	NA	NA	NA	AT3G15550.1	unknown protein; Has 25732 Blast hits to 16979 proteins in 961 species: Archae - 144; Bacteria - 1801; Metazoa - 12681; Fungi - 1868; Plants - 912; Viruses - 94; Other Eukaryotes - 8232 (source: NCBI BLink). 	LOC_Os01g08150.1	expressed protein	Medtr2g123560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201615.1.S1_at	B	B1S	POPTR_0002s02660	POPTR_0002s02660 (8:1456)	scaffold_2:1571971-1573427(+) (9)	NA	NA	NA	AT5G39590.1	TLD-domain containing nucleolar protein 	LOC_Os04g56790.1	"TLD family protein, putative, expressed"	Medtr3g144020.1	TLDc 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201619.1.S1_at	B	B1S	POPTR_0002s02900	POPTR_0002s02900 (8:983)	scaffold_2:1788225-1789362(+) (10)	NA	NA	NA	AT5G42480.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g03000.2	"division protein, putative, expressed"	Medtr1g028480.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201630.1.S1_at	B	B1S	POPTR_0002s03150	POPTR_0002s03150 (7:296)	scaffold_2:1949377-1949942(+) (9)	NA	NA	NA	AT1G19715.1	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.3	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201635.1.S1_at	B	B1S	POPTR_0002s03210	POPTR_0002s03210 (7:1452)	scaffold_2:1979208-1980664(-) (9)	NA	Q9KUD9	Ribosomal RNA small subunit methyltransferase I	AT1G45110.1	Tetrapyrrole (Corrin/Porphyrin) Methylases 	LOC_Os10g27450.2	"tetrapyrrole methylase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201641.1.S1_at	B	B1S	POPTR_0002s03420	POPTR_0002s03420 (5:532)	scaffold_2:2116878-2117596(-) (9)	NA	NA	NA	NA	NA	LOC_Os01g14710.1	conserved hypothetical protein	Medtr5g020880.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.201654.1.S1_at	B	B2S	POPTR_0002s03680	POPTR_0005s24910 (3:273)//POPTR_0002s03680 (8:263)	scaffold_2:2286637-2286900(-) (11)	NA	NA	NA	AT4G28556.1	PAK-box/P21-Rho-binding family protein 	LOC_Os02g56580.1	"P21-Rho-binding domain containing protein, putative"	Medtr2g093180.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201656.1.S1_at	B	B2S	POPTR_0002s03800	POPTR_0002s03800 (7:4238)//POPTR_0002s03810 (5:592)	scaffold_2:2358721-2365746(-) (9)	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201657.1.S1_at	B	B1S	POPTR_0002s03830	POPTR_0002s03830 (8:311)	scaffold_2:2388940-2391552(+) (11)	NA	Q84TE6	NAC domain-containing protein 21/22	AT4G28530.1	NAC domain containing protein 74 	LOC_Os04g43560.1	"no apical meristem protein, putative, expressed"	Medtr2g076740.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.20166.1.A1_at	B	B1S	POPTR_0005s12600	POPTR_0005s12600 (4:233)	scaffold_5:9376433-9377023(-) (11)	NA	Q94A64	F-box protein At5g03970	AT5G03970.2	F-box associated ubiquitination effector family protein 	LOC_Os03g56500.1	expressed protein	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201690.1.S1_at	B	B1S	POPTR_0002s04670	POPTR_0002s04670 (3:887)	NA	NA	Q9AR19	Histone acetyltransferase GCN5	AT3G54610.1	histone acetyltransferase of the GNAT family 1 	LOC_Os10g28040.1	"histone acetyltransferase GCN5, putative, expressed"	Medtr8g074500.1	GCN5-related N-acetyltransferase; Bromodomain 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.201694.1.S1_at	B	B1S	POPTR_0002s04730	POPTR_0002s04730 (8:1583)	scaffold_2:2972859-2978287(+) (11)	NA	NA	NA	AT1G03055.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os08g02210.2	expressed protein	Medtr1g083360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201700.1.S1_at	B	B1S	POPTR_0002s04850	POPTR_0002s04850 (7:237)	scaffold_2:3072719-3073105(-) (11)	NA	Q9M1V3	Pentatricopeptide repeat-containing protein At3g63370	AT3G63370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g39410.1	"pentatricopeptide, putative, expressed"	Medtr1g083640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20172.1.A1_at	B	B1S	POPTR_0016s14900	POPTR_0016s14900 (1:260)	NA	NA	NA	NA	AT3G54200.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os06g32970.1	harpin-induced protein 1 domain containing protein	Medtr8g005060.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.20174.1.S1_at	B	B1S	POPTR_0005s11800	POPTR_0005s11800 (8:268)	NA	NA	Q56XU4	Zinc finger CCCH domain-containing protein 6	AT1G19860.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os04g56750.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g090190.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.201740.1.S1_at	B	B1S	POPTR_0002s05510	POPTR_0002s05510 (7:962)	NA	NA	Q9CAD0	Transcription factor EGL1	AT1G63650.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g11020.1	rc - bHLH transcription factor regulating proanthocyanidin production in seeds	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.201747.1.S1_at	B	B1S	POPTR_0002s05690	POPTR_0002s05690 (8:137)	scaffold_2:3742909-3743082(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20177.1.S1_at	B	B1S	POPTR_0017s13470	POPTR_0017s13470 (7:529)	NA	NA	Q9FZ80	Sulfotransferase 17	AT3G45070.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g04320.1	"sulfotransferase domain containing protein, expressed"	Medtr8g077540.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.201775.1.S1_at	B	B1S	POPTR_0002s06440	POPTR_0002s06440 (7:321)	NA	NA	NA	NA	AT1G34065.1	S-adenosylmethionine carrier 2 	LOC_Os05g29860.3	"mitochondrial carrier protein, putative, expressed"	Medtr1g124560.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201789.1.S1_at	B	B2S	POPTR_0005s21660	POPTR_0002s06660 (5:283)//POPTR_0005s21660 (6:282)	NA	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.2	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201789.1.S1_x_at	B	B2S	POPTR_0002s06660	POPTR_0005s21660 (4:741)//POPTR_0002s06660 (7:737)	NA	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.3	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.20179.2.S1_at	B	B1S	POPTR_0004s09300	POPTR_0004s09300 (7:421)	NA	NA	P42739	Polyubiquitin (Fragment)	AT4G05320.6	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr4g124610.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201802.1.S1_at	B	B1S	POPTR_0002s06900	POPTR_0002s06900 (6:890)	NA	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20182.3.S1_at	B	B1S	POPTR_0005s01700	POPTR_0005s01700 (8:583)	NA	NA	NA	NA	AT1G56460.1	HIT zinc finger ;PAPA-1-like conserved region 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201825.1.S1_at	B	B1S	POPTR_0002s07440	POPTR_0002s07440 (8:679)	NA	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr5g044760.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201831.1.S1_at	B	B1S	POPTR_0002s07570	POPTR_0002s07570 (5:730)	NA	NA	Q9LP03	"Pentatricopeptide repeat-containing protein At1g43980, mitochondrial"	AT1G43980.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g32090.1	"pentatricopeptide, putative"	Medtr5g008630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20186.1.S1_at	B	B1S	POPTR_0006s24660	POPTR_0006s24660 (6:461)	NA	NA	NA	NA	AT5G56840.1	myb-like transcription factor family protein 	LOC_Os01g41900.1	"Myb transcription factor, putative, expressed"	Medtr4g160800.1	"Interleukin-6/G-CSF/MGF; Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.201862.1.S1_at	B	B1S	POPTR_0002s08350	POPTR_0002s08350 (6:1468)	scaffold_2:5821194-5823464(+) (10)	NA	Q9M291	Protein transport protein Sec24-like CEF	AT3G44340.1	clone eighty-four 	LOC_Os12g24250.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201867.1.S1_at	B	B1S	POPTR_0002s08480	POPTR_0002s08480 (2:183)	scaffold_2:5927329-5927426(+) (10)	NA	NA	NA	AT1G48200.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g05670.1	expressed protein	Medtr1g087370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20187.1.S1_at	B	B1S	POPTR_0002s05360	POPTR_0002s05360 (6:396)	NA	NA	Q5KPA7	Vacuolar protein 8	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.201872.1.S1_at	B	B1S	POPTR_0002s08620	POPTR_0002s08620 (6:1591)	NA	NA	Q6NRL0	PrdX-deacylase domain-containing protein 1	AT1G44835.2	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g52880.2	"ybaK/prolyl-tRNA synthetase family protein, putative, expressed"	Medtr3g097700.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201874.1.S1_s_at	B	B2S	POPTR_0005s15860	POPTR_0005s15880 (0:421)//POPTR_0005s15860 (0:418)	scaffold_2:6058485-6058913(-) (11)	NA	Q494P0	Probable inorganic phosphate transporter 1-7	AT3G54700.1	phosphate transporter 1;7 	LOC_Os03g05610.1	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.201898.1.S1_at	B	B1S	POPTR_0002s09170	POPTR_0002s09170 (5:1406)	NA	NA	Q0WNP3	Pentatricopeptide repeat-containing protein At4g18520	AT4G18520.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g44210.2	expressed protein	Medtr4g114870.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201943.1.S1_at	B	B1A	POPTR_0002s10130	POPTR_0002s10130 (5:663)	scaffold_2:7286712-7289674(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201945.1.S1_at	B	B1S	POPTR_0002s10210	POPTR_0002s10210 (8:1303)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201957.1.S1_x_at	B	B1S	POPTR_0016s11450	POPTR_0016s11450 (3:158)	NA	NA	A4GYS4	Apocytochrome f	ATCG00540.1	photosynthetic electron transfer A 	LOC_Os10g21290.1	"apocytochrome f precursor, putative"	Medtr5g065380.1	Cytochrome f; GRAS transcription factor 	GO:0015979|photosynthesis	GO:0020037|heme binding||GO:0009055|electron carrier activity	GO:0031361|integral to thylakoid membrane
PtpAffx.201995.1.S1_at	B	B1S	POPTR_0002s11260	POPTR_0002s11260 (8:922)	NA	NA	Q3SYZ6	Xylulose kinase	AT5G49650.1	xylulose kinase-2 	LOC_Os07g44660.1	"FGGY family of carbohydrate kinases, putative, expressed"	Medtr3g127920.2	"Carbohydrate kinase, FGGY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202011.1.S1_at	B	B1S	POPTR_0002s11620	POPTR_0002s11620 (4:715)	scaffold_2:8665211-8666912(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202012.1.S1_at	B	B1S	POPTR_0002s11650	POPTR_0002s11650 (8:953)	NA	NA	NA	NA	AT1G59540.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g35090.1	"kinesin motor domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202014.1.S1_at	B	B1S	POPTR_0002s11670	POPTR_0002s11670 (4:984)	scaffold_2:8684524-8685580(-) (9)	NA	NA	NA	AT1G59520.3	CW7 	LOC_Os07g14514.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202018.1.S1_at	B	B1S	POPTR_0002s11740	POPTR_0002s11740 (5:210)	scaffold_2:8715413-8718444(-) (10)	NA	NA	NA	AT1G27480.1	alpha/beta-Hydrolases superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202024.1.S1_at	B	B1S	POPTR_0002s11850	POPTR_0002s11850 (8:439)	scaffold_2:8797565-8798097(+) (11)	NA	NA	NA	AT1G27461.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g39700.1	expressed protein	Medtr1g023000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202026.1.S1_at	B	B1S	POPTR_0002s11890	POPTR_0002s11890 (8:1326)	NA	NA	Q8VEJ1	GPN-loop GTPase 2	AT5G22370.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g34950.1	"ATP binding protein, putative, expressed"	Medtr5g096990.1	"Protein of unknown function, ATP binding "	NA	GO:0000166|nucleotide binding	NA
PtpAffx.202043.1.S1_at	B	B1S	POPTR_0002s12230	POPTR_0002s12230 (8:433)	NA	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.202061.1.S1_at	B	B1S	POPTR_0002s12810	POPTR_0002s12810 (6:368)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202079.1.S1_at	B	B1S	POPTR_0002s13140	POPTR_0002s13140 (8:357)	scaffold_2:9782915-9784099(+) (11)	NA	Q8RYD1	B3 domain-containing protein REM16	AT4G33280.1	AP2/B3-like transcriptional factor family protein 	LOC_Os03g42420.1	"B3 DNA binding domain containing protein, expressed"	Medtr1g025420.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.20208.2.A1_at	B	B2S	POPTR_0003s15160	POPTR_0003s15160 (2:178)//POPTR_0745s00210 (1:101)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202102.1.S1_at	B	B1S	POPTR_0002s13600	POPTR_0002s13600 (8:745)	scaffold_2:10082916-10083690(+) (10)	NA	NA	NA	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g41930.2	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.202159.1.S1_at	B	B1S	POPTR_0002s14870	POPTR_0002s14870 (5:247)	NA	NA	P51110	Dihydroflavonol-4-reductase	AT5G42800.1	dihydroflavonol 4-reductase 	LOC_Os04g53800.1	"leucoanthocyanidin reductase, putative, expressed"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202172.1.S1_at	B	B2S	POPTR_0002s15100	POPTR_0002s15100 (8:3461)//POPTR_0014s06850 (2:3244)	NA	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.1	WD-40 repeat family protein / beige-related 	LOC_Os04g46894.1	"beige/BEACH domain containing protein, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202179.1.S1_at	B	B1S	POPTR_0004s19510	POPTR_0004s19510 (0:121)	scaffold_2:11368350-11368498(+) (11)	NA	NA	NA	AT2G27590.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g63950.1	expressed protein	Medtr4g069890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202179.1.S1_x_at	B	B1S	POPTR_0004s19510	POPTR_0004s19510 (2:126)	scaffold_2:11368350-11368503(+) (11)	NA	NA	NA	AT2G27590.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g63950.1	expressed protein	Medtr4g069890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20218.1.S1_at	B	B1S	POPTR_0012s14870	POPTR_0012s14870 (4:1886)	NA	NA	NA	NA	AT1G31170.2	sulfiredoxin 	LOC_Os06g07760.1	"sulfiredoxin-1, putative, expressed"	Medtr4g114390.1	ParB-like nuclease 	NA	GO:0003677|DNA binding	NA
PtpAffx.202183.1.S1_at	B	B1S	POPTR_0002s15290	POPTR_0002s15290 (8:1137)	NA	NA	P37829	Fructokinase	AT5G51830.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g66940.1	"kinase, pfkB family, putative, expressed"	Medtr6g096500.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202192.1.S1_at	B	B1S	POPTR_0002s15550	POPTR_0002s15550 (5:374)	scaffold_2:11612623-11613224(+) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT1G33060.1	NAC 014 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.202193.1.S1_at	B	B1S	POPTR_0002s15570	POPTR_0002s15570 (8:425)	scaffold_2:11619374-11620363(-) (11)	NA	Q9LEX0	F-box protein PP2-A13	AT3G61060.2	phloem protein 2-A13 	LOC_Os09g35680.1	"OsFBX339 - F-box domain containing protein, expressed"	Medtr5g010960.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2022.1.S1_at	B	B1S	POPTR_0015s15010	POPTR_0015s15010 (8:236)	scaffold_668:1680-1934(+) (11)	NA	Q9LFP3	Probable glycosyltransferase At5g11130	AT2G35100.1	Exostosin family protein 	LOC_Os07g37960.1	"exostosin family domain containing protein, expressed"	Medtr4g114360.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.202203.1.S1_at	B	B1S	POPTR_0002s15680	POPTR_0002s15680 (7:2655)	NA	NA	O67066	Cell division protein ftsY homolog	AT2G45770.1	"signal recognition particle receptor protein, chloroplast (FTSY) "	LOC_Os01g72800.1	"signal recognition particle receptor, putative, expressed"	Medtr8g034280.1	Cell division transporter substrate-binding protein FtsY 	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding	NA
PtpAffx.202230.1.S1_at	B	B1S	POPTR_0002s16600	POPTR_0002s16600 (7:347)	scaffold_2:12423528-12424627(-) (10)	NA	Q9M316	"Pentatricopeptide repeat-containing protein At3g61520, mitochondrial"	AT3G61520.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g13950.1	"pentatricopeptide, putative, expressed"	Medtr3g149040.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202231.1.S1_at	B	B1S	POPTR_0002s16610	POPTR_0002s16610 (8:639)	NA	NA	NA	NA	AT3G61530.2	Phosphoenolpyruvate carboxylase family protein 	LOC_Os01g12560.1	"3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed"	AC235567_90.1	Ketopantoate hydroxymethyltransferase AC235567.1 345051-342096 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202235.1.S1_at	B	B1A	POPTR_0002s16680	POPTR_0002s16680 (6:274)	scaffold_2:12471556-12472120(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202242.1.S1_at	B	B1S	POPTR_0002s16800	POPTR_0002s16800 (5:379)	scaffold_2:12550875-12552092(+) (10)	NA	NA	NA	AT4G01200.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g47040.1	"C2 domain containing protein, putative, expressed"	Medtr7g143470.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202254.1.S1_at	B	B1S	POPTR_0002s17050	POPTR_0002s17050 (7:2834)	scaffold_2:12816196-12819056(-) (9)	NA	Q7SYK0	Chitinase domain-containing protein 1	AT4G01040.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g43220.1	"chitinase domain-containing protein 1 precursor, putative, expressed"	Medtr5g025520.1	"Glycoside hydrolase, family 18 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202260.1.S1_at	B	B2S	POPTR_0002s17160	POPTR_0002s17160 (5:648)//POPTR_0002s17170 (5:394)	scaffold_2:12941474-12945176(-) (11)	NA	Q9M365	Probable F-box protein At3g61730	AT3G61730.1	reduced male fertility 	LOC_Os01g11990.1	expressed protein	AC235758_10.1	Cyclin-like F-box AC235758.1 51077-54013 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202261.1.S1_at	B	B1S	POPTR_0002s17180	POPTR_0002s17180 (6:292)	NA	NA	Q9M364	Histone-lysine N-methyltransferase ATX3	AT3G61740.2	SET domain protein 14 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202263.1.S1_at	B	B1S	POPTR_0002s17190	POPTR_0002s17190 (7:1860)	scaffold_2:12965867-12967781(+) (10)	NA	NA	NA	AT4G18230.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). 	LOC_Os03g30934.3	"UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed"	Medtr2g126390.1	Oligosaccharide biosynthesis protein Alg14 like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202265.1.S1_at	B	B1S	POPTR_0002s17210	POPTR_0002s17210 (8:768)	scaffold_2:12996781-12997674(-) (10)	NA	NA	NA	AT3G61750.1	Cytochrome b561/ferric reductase transmembrane with DOMON related domain 	LOC_Os01g48850.1	"auxin-responsive protein, putative, expressed"	AC233651_15.1	DOMON; Cytochrome b561 / ferric reductase transmembrane AC233651.1 46198-48399 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202278.1.S1_at	B	B1S	POPTR_0002s17480	POPTR_0002s17480 (7:282)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g084270.1	Nucleic acid binding NABP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202292.1.S1_at	B	B1S	POPTR_0002s17670	POPTR_0002s17670 (4:345)	NA	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT4G22290.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os04g51710.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202311.1.S1_at	B	B1S	POPTR_0002s18280	POPTR_0002s18280 (4:3127)	scaffold_2:14252454-14258288(-) (9)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g44820.1	"no apical meristem protein, putative, expressed"	AC233657_5.1	No apical meristem (NAM) protein AC233657.1 22252-24463 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.202349.1.S1_at	B	B1S	POPTR_0002s20280	POPTR_0002s20280 (4:352)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202375.1.S1_at	B	B1S	POPTR_0002s19740	POPTR_0002s19740 (8:1898)	NA	NA	Q4V9Y0	Protein fat-free homolog	AT4G02030.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os03g52770.1	expressed protein	Medtr1g106780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202379.1.S1_x_at	B	B1S	POPTR_0002s19650	POPTR_0002s19650 (8:197)	scaffold_2:15595009-15595247(+) (11)	NA	P49039	Sucrose synthase	AT1G73370.1	sucrose synthase 6 	LOC_Os02g58480.1	"sucrose synthase, putative, expressed"	Medtr5g084740.1	Sucrose synthase; N-6 Adenine-specific DNA methylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202407.1.S1_at	B	B1S	POPTR_0002s18980	POPTR_0002s18980 (7:424)	scaffold_2:14865557-14866102(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G64830.1	Eukaryotic aspartyl protease family protein 	LOC_Os09g27940.2	"aspartic proteinase nepenthesin-1 precursor, putative, expressed"	Medtr8g039840.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202410.1.S1_at	B	B1S	POPTR_0002s18930	POPTR_0002s18930 (6:1703)	NA	NA	B3CL87	Peptide chain release factor 1	AT2G47020.1	Peptide chain release factor 1 	LOC_Os05g19630.2	"peptide chain release factor protein, putative, expressed"	Medtr7g133970.1	Peptide chain release factor 1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
PtpAffx.202419.1.S1_at	B	B2S	POPTR_0002s18800	POPTR_0002s18800 (7:621)//POPTR_0014s10770 (0:411)	scaffold_2:14679056-14682135(-) (9)	NA	A7PZL3	Probable polygalacturonase	AT3G62110.1	Pectin lyase-like superfamily protein 	LOC_Os03g61800.2	"polygalacturonase, putative, expressed"	Medtr7g134110.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.202425.1.S1_at	B	B1S	POPTR_0002s22870	POPTR_0002s22870 (5:774)	NA	NA	A7RWD2	Probable cytosolic iron-sulfur protein assembly protein	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202433.1.S1_at	B	B1S	POPTR_0002s22750	POPTR_0002s22750 (0:2)	scaffold_2:19663917-19664051(-) (11)	NA	NA	NA	AT4G03100.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g34840.1	"rhoGAP domain containing protein, expressed"	AC235488_25.1	PAK-box/P21-Rho-binding; RhoGAP AC235488.1 117094-119868 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202433.1.S1_x_at	B	B1S	POPTR_0002s22750	POPTR_0002s22750 (0:2)	scaffold_2:19663710-19664051(-) (11)	NA	NA	NA	AT4G03100.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g34840.1	"rhoGAP domain containing protein, expressed"	AC235488_25.1	PAK-box/P21-Rho-binding; RhoGAP AC235488.1 117094-119868 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202436.1.S1_at	B	B1S	POPTR_0002s22680	POPTR_0002s22680 (8:402)	scaffold_2:19497438-19498064(-) (10)	NA	Q9SIM9	F-box protein ORE9	AT2G42620.1	RNI-like superfamily protein 	LOC_Os06g06050.1	"OsFBL27 - F-box domain and LRR containing protein, expressed"	Medtr4g109790.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202452.1.S1_at	B	B1S	POPTR_0002s22340	POPTR_0002s22340 (8:59)	scaffold_2:19055852-19055915(+) (11)	NA	NA	NA	AT4G25330.1	unknown protein; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g32100.1	conserved hypothetical protein	Medtr3g106610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202469.1.S1_at	B	B1S	POPTR_0002s21930	POPTR_0002s21930 (7:1478)	NA	NA	Q07511	"Formate dehydrogenase, mitochondrial"	AT5G14780.1	formate dehydrogenase 	LOC_Os06g29180.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20248.1.S1_at	B	B1S	POPTR_0015s09340	POPTR_0015s09340 (5:215)	NA	NA	NA	NA	AT5G14540.1	Protein of unknown function (DUF1421) 	LOC_Os05g07730.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202513.1.S1_at	B	B1A	POPTR_0002s23200	POPTR_0002s23200 (8:353)	scaffold_2:20610633-20617248(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202517.1.S1_at	B	B1S	POPTR_0002s23260	POPTR_0002s23260 (4:63)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202517.1.S1_x_at	B	B1S	POPTR_0002s23260	POPTR_0002s23260 (8:291)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202520.1.S1_x_at	B	B3S	POPTR_0157s00235	POPTR_1538s00200 (2:438)//POPTR_0015s00355 (0:438)//POPTR_0157s00235 (2:434)	scaffold_2:20811502-20812026(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202529.1.S1_at	B	B3S	POPTR_0017s02160	POPTR_0017s02160 (5:852)//POPTR_0115s00200 (1:637)//POPTR_0115s00225 (1:186)	NA	NA	Q6INR1	Eukaryotic translation initiation factor 3 subunit J	AT1G66070.2	Translation initiation factor eIF3 subunit 	LOC_Os02g02990.1	"translation initiation factor eIF3 subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20253.1.A1_at	B	B1S	POPTR_0009s00720	POPTR_0009s00720 (0:17)	scaffold_9:813581-814011(-) (9)	NA	Q9EQ15	Guanine nucleotide-binding protein subunit beta-like protein 1	AT4G29860.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g04040.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g153930.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202549.1.S1_at	B	B2S	POPTR_0004s08300	POPTR_0004s08300 (0:318)//POPTR_0017s02610 (0:217)	NA	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os01g46390.1	"DUF538 domain containing protein, putative"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202549.1.S1_x_at	B	B2S	POPTR_0004s08300	POPTR_0004s08300 (1:369)//POPTR_0017s02610 (1:217)	NA	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os01g46390.1	"DUF538 domain containing protein, putative"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202571.1.S1_at	B	B3S	POPTR_0017s03100	POPTR_0017s03100 (6:308)//POPTR_0017s03090 (3:82)//POPTR_0005s14310 (2:81)	scaffold_17:2233987-2234358(-) (9)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.202586.1.S1_at	B	B1S	POPTR_0005s14620	POPTR_0005s14620 (7:351)	scaffold_5:11638607-11639040(+) (11)	NA	Q9FIZ7	5-oxoprolinase	AT5G37830.1	oxoprolinase 1 	LOC_Os01g73514.1	"5-oxoprolinase, putative, expressed"	Medtr4g121000.1	"Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal "	NA	GO:0003824|catalytic activity	NA
PtpAffx.202601.1.S1_at	B	B1S	POPTR_0005s15030	POPTR_0005s15030 (5:1259)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202619.1.S1_at	B	B1S	POPTR_0002s23590	POPTR_0002s23590 (8:387)	scaffold_2:21133316-21133974(+) (10)	NA	O80765	Pantothenate kinase 1	AT1G60440.1	pantothenate kinase 1 	LOC_Os09g36270.1	"pantothenate kinase, putative, expressed"	Medtr3g113960.1	Eukaryotic pantothenate kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202620.1.S1_at	B	B1S	POPTR_0002s23600	POPTR_0002s23600 (7:333)	scaffold_2:21135859-21136439(+) (10)	NA	NA	NA	AT1G05510.1	Protein of unknown function (DUF1264) 	LOC_Os05g49440.2	"DUF1264 domain containing protein, putative, expressed"	Medtr3g104290.1	Protein of unknown function DUF1264 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20264.1.S1_at	B	B1S	POPTR_0005s07800	POPTR_0005s07800 (6:147)	NA	NA	P0CB23	Uncharacterized protein At4g38062	AT4G38070.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr5g033460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202645.1.S1_at	B	B1S	POPTR_0002s24080	POPTR_0002s24080 (2:353)	NA	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT3G25480.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g66600.2	"rhodanese-like, putative, expressed"	Medtr7g092420.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202661.1.S1_at	B	B1S	POPTR_0002s24360	POPTR_0002s24360 (8:1003)	NA	NA	Q9FKB5	Cyclin-dependent kinase inhibitor 3	AT5G48820.1	inhibitor/interactor with cyclin-dependent kinase 	LOC_Os03g04490.1	"cyclin-dependent kinase inhibitor, putative, expressed"	Medtr7g064470.1	Cyclin-dependent kinase inhibitor 	GO:0007050|cell cycle arrest	GO:0004861|cyclin-dependent protein kinase inhibitor activity	GO:0005634|nucleus
PtpAffx.202667.1.S1_at	B	B1S	POPTR_0002s24450	POPTR_0002s24450 (8:886)	scaffold_2:21830338-21831224(+) (10)	NA	Q10137	Sec14 cytosolic factor	AT3G24840.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g48990.1	"phosphatidylinositol transfer, putative, expressed"	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20268.1.A1_at	B	B1S	POPTR_0014s03580	POPTR_0014s03580 (0:97)	NA	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os12g30040.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr2g014200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20270.1.S1_at	B	B1S	POPTR_0001s28830	POPTR_0001s28830 (5:304)	scaffold_1:27612331-27617636(+) (10)	NA	NA	NA	AT1G07060.1	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g01540.1	conserved hypothetical protein	Medtr3g034240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202717.1.S1_at	B	B1S	POPTR_0014s18670	POPTR_0014s18670 (5:551)	scaffold_2:22797631-22798187(+) (11)	NA	Q7GB25	ABC transporter C family member 5	AT1G04120.1	multidrug resistance-associated protein 5 	LOC_Os03g04920.1	"multidrug resistance-associated protein, putative, expressed"	Medtr7g117090.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.202768.1.S1_x_at	B	B1S	POPTR_0003s00210	POPTR_0003s00210 (1:175)	scaffold_71:64638-64724(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.202769.1.S1_at	B	B2S	POPTR_0006s20170	POPTR_0006s20170 (0:142)//POPTR_0018s11890 (0:142)	scaffold_3:76336-76490(-) (11)//scaffold_71:6527-6681(-) (11)	NA	Q9SZ11	Probable glycerophosphoryl diester phosphodiesterase 2	AT5G58170.1	SHV3-like 5 	LOC_Os02g09450.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr8g146010.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.202773.1.S1_at	B	B1S	POPTR_0036s00260	POPTR_0036s00260 (5:182)	scaffold_10:1018122-1018304(-) (9)//scaffold_10:1273374-1273556(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20278.2.A1_at	B	B1S	POPTR_0018s09020	POPTR_0018s09020 (3:553)	NA	NA	O82480	Rac-like GTP-binding protein ARAC7	AT4G28950.1	RHO-related protein from plants 9 	LOC_Os05g43820.3	"ras-related protein, putative, expressed"	Medtr6g099230.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.202781.1.S1_at	B	B2S	POPTR_0003s01070	POPTR_0003s01070 (6:1165)//POPTR_0003s01060 (4:223)	scaffold_3:933777-938066(-) (10)	NA	Q9C5Y0	Phospholipase D delta	AT4G35790.2	phospholipase D delta 	LOC_Os07g15680.1	"phospholipase D, putative, expressed"	Medtr4g137270.1	C2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.202791.1.S1_at	B	B1S	POPTR_0003s01245	POPTR_0003s01245 (8:225)	scaffold_3:1054119-1054361(+) (10)	NA	Q9SZT8	"Pentatricopeptide repeat-containing protein At4g37380, chloroplastic"	AT4G37380.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g13110.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202791.1.S1_x_at	B	B1S	POPTR_0003s01245	POPTR_0003s01245 (7:225)	scaffold_3:1049297-1054361(+) (10)	NA	Q9SZT8	"Pentatricopeptide repeat-containing protein At4g37380, chloroplastic"	AT4G37380.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g13110.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202801.1.S1_at	B	B2S	POPTR_0003s01320	POPTR_0001s21880 (0:305)//POPTR_0003s01320 (8:305)	NA	NA	Q0WVV0	"Pentatricopeptide repeat-containing protein At1g10910, chloroplastic"	AT1G10910.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g37870.4	"PPR repeat domain containing protein, putative, expressed"	Medtr2g007110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202801.1.S1_x_at	B	B2S	POPTR_0003s01320	POPTR_0003s01320 (8:385)//POPTR_0001s21880 (1:361)	NA	NA	Q0WVV0	"Pentatricopeptide repeat-containing protein At1g10910, chloroplastic"	AT1G10910.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g37870.4	"PPR repeat domain containing protein, putative, expressed"	Medtr2g007110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202803.1.S1_at	B	B1S	POPTR_0003s01390	POPTR_0003s01390 (8:872)	NA	NA	NA	NA	AT5G24690.1	Protein of unknown function (DUF3411) 	LOC_Os12g18630.1	expressed protein	Medtr2g095320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202830.1.S1_at	B	B1S	POPTR_0003s01800	POPTR_0003s01800 (7:2647)	NA	NA	Q9CWK3	CD2 antigen cytoplasmic tail-binding protein 2	AT5G09390.1	CD2-binding protein-related 	LOC_Os09g20590.1	"CD2-binding protein-related, putative, expressed"	Medtr2g008850.1	"CD2-binding protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202830.1.S1_x_at	B	B1S	POPTR_0003s01800	POPTR_0003s01800 (8:2647)	NA	NA	Q9CWK3	CD2 antigen cytoplasmic tail-binding protein 2	AT5G09390.1	CD2-binding protein-related 	LOC_Os09g20590.1	"CD2-binding protein-related, putative, expressed"	Medtr2g008850.1	"CD2-binding protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202831.1.S1_s_at	B	B3S	POPTR_0003s01830	POPTR_0001s21290 (0:2386)//POPTR_0003s01830 (6:1186)//POPTR_0003s01840 (5:355)	scaffold_3:1700038-1704393(-) (11)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.2	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.2	"ATPase, E1-E2 type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202837.1.S1_at	B	B1A	POPTR_0003s01980	POPTR_0003s01980 (4:125)	scaffold_3:1867696-1876538(-) (9)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202842.1.S1_at	B	B1S	POPTR_0011s01830	POPTR_0011s01830 (7:366)	scaffold_11:1602239-1602604(-) (9)	NA	NA	NA	AT4G04670.1	Met-10+ like family protein / kelch repeat-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202846.1.S1_x_at	B	B1S	POPTR_0003s02320	POPTR_0003s02320 (0:160)	scaffold_27:47518-47719(-) (11)//scaffold_27:182845-183026(-) (11)//scaffold_3:2129267-2129448(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202867.1.S1_at	B	B1S	POPTR_0003s03740	POPTR_0003s03740 (4:146)	scaffold_3:4411941-4412476(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202872.1.S1_at	B	B1S	POPTR_0003s03690	POPTR_0003s03690 (8:682)	scaffold_3:4354952-4355793(-) (9)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g14050.2	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.202877.1.S1_s_at	B	B2S	POPTR_0011s01952	POPTR_0011s01952 (7:526)//POPTR_0001s08730 (0:210)	scaffold_3:8226360-8226880(-) (10)	NA	NA	NA	NA	NA	LOC_Os06g38480.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr6g036540.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.202884.1.S1_x_at	B	B1S	POPTR_0013s07680	POPTR_0013s07680 (1:193)	scaffold_3:8043904-8044012(+) (10)	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr4g062150.1	Chloroplast Ycf2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202886.1.S1_at	B	B2S	POPTR_0003s06490	POPTR_0003s06490 (4:209)//POPTR_0003s06500 (4:197)	scaffold_3:7991827-7992380(-) (11)	NA	P05311	Photosystem I P700 chlorophyll a apoprotein A2	ATCG00340.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g21248.1	"photosystem I P700 chlorophyll a apoprotein A2, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202899.1.S1_at	B	B1S	POPTR_0003s06130	POPTR_0003s06130 (7:801)	scaffold_3:7545420-7546221(-) (11)	NA	Q55DE7	Ataxin-2 homolog	AT1G54170.1	CTC-interacting domain 3 	LOC_Os02g27950.1	"ataxin-2 related protein, putative, expressed"	Medtr2g120650.1	"Ataxin-2, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202899.1.S1_x_at	B	B1S	POPTR_0003s06130	POPTR_0003s06130 (7:814)	scaffold_3:7545420-7546234(-) (11)	NA	Q55DE7	Ataxin-2 homolog	AT1G54170.1	CTC-interacting domain 3 	LOC_Os02g27950.1	"ataxin-2 related protein, putative, expressed"	Medtr2g120650.1	"Ataxin-2, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202925.1.S1_at	B	B1S	POPTR_0003s05670	POPTR_0003s05670 (7:799)	scaffold_3:7073852-7075115(-) (10)	NA	NA	NA	AT1G80360.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g08270.1	"aminotransferase, classes I and II, domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202934.1.S1_at	B	B1S	POPTR_0003s05460	POPTR_0003s05460 (0:10)	scaffold_3:6739272-6739486(+) (11)	NA	Q9FGK3	Putative MO25-like protein At5g47540	AT5G47540.1	Mo25 family protein 	LOC_Os07g39630.1	"calcium-binding protein, putative, expressed"	Medtr2g030130.1	Mo25-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20296.2.A1_at	B	B1S	POPTR_0002s08530	POPTR_0002s08530 (5:295)	NA	NA	Q93ZH0	LysM domain-containing GPI-anchored protein 1	AT1G21880.2	lysm domain GPI-anchored protein 1 precursor 	LOC_Os02g53000.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	Medtr3g097500.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidoglycan-binding LysM "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.202966.1.S1_at	B	B1S	POPTR_0003s04780	POPTR_0003s04780 (2:39)	scaffold_3:5813670-5813791(-) (11)	NA	Q5Z9S8	Pleiotropic drug resistance protein 12	AT3G16340.2	pleiotropic drug resistance 1 	LOC_Os06g36090.2	"ABC-2 type transporter, putative, expressed"	Medtr1g013160.1	"Glycoside hydrolase, family 10; AAA ATPase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202974.1.S1_at	B	B1S	POPTR_0003s04590	POPTR_0003s04590 (8:205)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202985.1.S1_at	B	B1S	POPTR_0001s16540	POPTR_0001s16540 (0:75)	scaffold_3:8326660-8326735(-) (9)	NA	NA	NA	AT1G17360.1	BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 9949 Blast hits to 7480 proteins in 576 species: Archae - 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants - 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI BLink). 	LOC_Os07g42410.1	expressed protein	Medtr8g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202985.1.S1_x_at	B	B1S	POPTR_0001s16540	POPTR_0001s16540 (2:131)	scaffold_3:8326634-8326771(-) (11)	NA	NA	NA	AT1G17360.1	BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 9949 Blast hits to 7480 proteins in 576 species: Archae - 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants - 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI BLink). 	LOC_Os07g42410.1	expressed protein	Medtr8g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202993.1.S1_at	B	B1S	POPTR_0003s06960	POPTR_0003s06960 (6:554)	scaffold_3:8565519-8566051(+) (9)	NA	NA	NA	NA	NA	LOC_Os02g35650.1	"late embryogenesis abundant protein, putative, expressed"	Medtr8g026440.1	Late embryogenesis abundant protein 3 	GO:0006950|response to stress	NA	NA
PtpAffx.203.1.S1_at	B	B1S	POPTR_0017s02850	POPTR_0017s02850 (8:412)	NA	NA	Q50EX6	Protein ODORANT1	AT5G16600.1	myb domain protein 43 	LOC_Os08g33150.1	"MYB family transcription factor, putative, expressed"	Medtr5g085860.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203026.1.S1_at	B	B1S	POPTR_0003s07620	POPTR_0003s07620 (5:1243)	NA	NA	NA	NA	AT4G17380.1	MUTS-like protein 4 	LOC_Os07g30240.1	mutS family domain IV containing protein	Medtr5g012970.1	"DNA mismatch repair protein, eukaryotic MSH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20308.1.A1_at	B	B1S	POPTR_0001s40330	POPTR_0001s40330 (8:520)	NA	NA	NA	NA	AT3G14980.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os04g59510.1	"PHD finger family protein, putative, expressed"	Medtr5g079640.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.20309.1.S1_at	B	B1S	POPTR_0008s02900	POPTR_0008s02900 (5:449)	NA	NA	Q9Y169	Exostosin-2	AT5G04500.1	glycosyltransferase family protein 47 	LOC_Os05g46260.1	"exostosin, putative, expressed"	Medtr5g089480.1	"EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "	GO:0055114|oxidation reduction	"GO:0009496|plastoquinol-plastocyanin reductase activity||GO:0016758|""transferase activity, transferring hexosyl groups""||GO:0051537|""2 iron, 2 sulfur cluster binding"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum||GO:0042651|thylakoid membrane
PtpAffx.203108.1.S1_at	B	B2S	POPTR_0003s09770	POPTR_0003s09780 (0:395)//POPTR_0003s09770 (2:293)	scaffold_3:11012407-11012801(+) (11)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028050.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.203114.1.S1_s_at	B	B2S	POPTR_0003s09930	POPTR_0003s09930 (8:2830)//POPTR_0003s09920 (1:50)	scaffold_3:11086956-11092076(+) (9)	NA	Q94F87	DNA (cytosine-5)-methyltransferase CMT2	AT4G19020.1	chromomethylase 2 	LOC_Os05g13780.1	"C-5 cytosine-specific DNA methylase, putative, expressed"	Medtr5g023510.1	Chromo; Bromo adjacent region; C-5 cytosine-specific DNA methylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203140.1.S1_at	B	B1S	POPTR_0003s10500	POPTR_0003s10500 (2:141)	scaffold_3:11448611-11450242(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203177.1.S1_at	B	B1A	POPTR_0003s11270	POPTR_0003s11270 (0:269)	scaffold_3:12138798-12139922(-) (11)	NA	Q7XDC8	"Malate dehydrogenase, cytoplasmic"	AT5G56720.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr8g005780.1	"Malate dehydrogenase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203177.1.S1_x_at	B	B1A	POPTR_0003s11270	POPTR_0003s11270 (0:269)	scaffold_3:12138798-12139969(-) (11)	NA	Q7XDC8	"Malate dehydrogenase, cytoplasmic"	AT5G56720.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr8g005780.1	"Malate dehydrogenase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203178.1.S1_at	B	B1S	POPTR_0001s07730	POPTR_0001s07730 (0:454)	scaffold_3:12145194-12145595(-) (11)	NA	A7YVD7	"UPF0551 protein C8orf38 homolog, mitochondrial"	AT1G62730.1	Terpenoid synthases superfamily protein 	LOC_Os06g01470.1	"AGAP000326-PA, putative, expressed"	Medtr5g012220.1	"UPF0551 protein C8orf38 homolog, related "	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.203190.1.S1_at	B	B1S	POPTR_0003s11600	POPTR_0003s11600 (8:194)	scaffold_3:12392112-12394723(+) (11)	NA	NA	NA	AT2G27830.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g32580.1	expressed protein	Medtr5g011910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203206.1.S1_at	B	B1S	POPTR_0003s11980	POPTR_0003s11980 (8:811)	NA	NA	Q2KJ22	Protein FAM63A	AT4G11860.1	Protein of unknown function (DUF544)      	LOC_Os06g49800.1	"ubiquitin interaction motif family protein, expressed"	Medtr5g011220.1	Protein of unknown function DUF544 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203209.1.S1_at	B	B1S	POPTR_0003s12090	POPTR_0003s12090 (8:2282)	scaffold_3:12769979-12772261(-) (11)	NA	NA	NA	AT4G11790.1	Pleckstrin homology (PH) domain superfamily protein 	LOC_Os03g46480.1	"ranBP1 domain containing protein, expressed"	Medtr5g011100.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203227.1.S1_at	B	B1S	POPTR_0003s12390	POPTR_0003s12390 (4:843)	scaffold_3:12978030-12979245(-) (9)	NA	Q9S7G7	Myb-related protein 3R-1	AT4G32730.2	Homeodomain-like protein 	LOC_Os12g13570.1	"MYB family transcription factor, putative, expressed"	Medtr7g068380.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203240.1.S1_x_at	B	B2S	POPTR_0003s12650	POPTR_0003s12630 (5:431)//POPTR_0003s12650 (8:305)	scaffold_3:13155194-13155624(-) (11)	NA	Q6H5X0	Putative ripening-related protein 2	NA	NA	LOC_Os02g42450.1	"RIPER1 - Ripening-related family protein precursor, expressed"	Medtr7g084780.1	Barwin-related endoglucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203285.1.S1_at	B	B1S	POPTR_0003s13570	POPTR_0003s13570 (7:329)	scaffold_3:13924718-13925530(-) (10)	NA	A9HF18	Translation initiation factor IF-2	AT4G11160.1	"Translation initiation factor 2, small GTP-binding protein "	LOC_Os09g34010.1	expressed protein	Medtr5g033550.1	"Elongation factor Tu, domain 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203300.1.S1_at	B	B1S	POPTR_0003s13940	POPTR_0003s13940 (8:59)	NA	NA	Q42059	Endoglucanase 6	AT1G64390.1	glycosyl hydrolase 9C2 	LOC_Os01g12070.1	"endoglucanase precursor, putative, expressed"	Medtr5g093090.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0030246|carbohydrate binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0005576|extracellular region
PtpAffx.203308.1.S1_at	B	B1S	POPTR_0003s14120	POPTR_0003s14120 (8:732)	NA	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT4G10950.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os02g18870.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g009110.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.203314.1.S1_at	B	B1S	POPTR_0003s14360	POPTR_0003s14360 (7:191)	NA	NA	Q03685	Luminal-binding protein 5	AT5G42020.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203314.1.S1_x_at	B	B1S	POPTR_0003s14360	POPTR_0003s14360 (8:331)	NA	NA	Q03685	Luminal-binding protein 5	AT5G42020.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203325.1.S1_at	B	B1S	POPTR_0003s14700	POPTR_0003s14700 (7:179)	scaffold_3:14699048-14699277(-) (11)	NA	P46897	Homeobox-leucine zipper protein ATHB-7	AT2G46680.1	homeobox 7 	LOC_Os09g35910.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g029340.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.203336.1.S1_at	B	B1S	POPTR_0003s14970	POPTR_0003s14970 (7:418)	NA	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g47030.1	"receptor protein kinase, putative"	AC233576_1.1	Protein kinase; AC233576.2 1048-3881 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203339.1.S1_at	B	B1S	POPTR_0003s14970	POPTR_0003s14970 (6:190)	scaffold_3:14881228-14881619(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g47030.1	"receptor protein kinase, putative"	AC233576_1.1	Protein kinase; AC233576.2 1048-3881 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.203358.1.S1_at	B	B1S	POPTR_0003s15570	POPTR_0003s15570 (8:1059)	NA	NA	P49731	DNA replication licensing factor mcm6	AT5G44635.1	minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os05g14590.1	"MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed"	Medtr4g096540.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.203361.1.S1_at	B	B1S	POPTR_0003s15610	POPTR_0003s15610 (5:2877)	scaffold_3:15351523-15354454(+) (10)	NA	Q54XM9	Transcription initiation factor TFIID subunit 11	AT4G20280.1	TBP-associated factor 11 	LOC_Os01g48810.1	"transcription initiation factor TFIID subunit 11, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005634|nucleus
PtpAffx.20338.1.A1_at	B	B1S	POPTR_0006s20100	POPTR_0006s20100 (7:264)	NA	NA	Q0VCR1	UPF0549 protein C20orf43 homolog	AT5G58020.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os06g08490.1	"X0001, putative, expressed"	Medtr8g145760.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203391.1.S1_at	B	B1S	POPTR_0003s16170	POPTR_0003s16170 (8:332)	NA	NA	Q5W7F2	ADP-ribosylation factor GTPase-activating protein AGD3	AT5G13300.1	ARF GTPase-activating protein 	LOC_Os09g33600.1	"ARF GTPase-activating domain-containing protein, putative, expressed"	Medtr7g020730.1	Arf GTPase activating protein; BAR; Pleckstrin homology-type 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.203406.1.S1_at	B	B1S	POPTR_0003s16450	POPTR_0003s16450 (7:372)	scaffold_3:16041688-16042196(+) (11)	NA	Q9XIC7	Somatic embryogenesis receptor kinase 2	AT5G21090.1	Leucine-rich repeat (LRR) family protein 	LOC_Os08g07760.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g005220.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203420.1.S1_s_at	B	B1S	POPTR_0003s16780	POPTR_0003s16780 (8:85)	NA	NA	Q6YZE8	Squamosa promoter-binding-like protein 16	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.203422.1.S1_at	B	B1S	POPTR_0003s16970	POPTR_0003s16970 (8:31)	NA	NA	Q8TBM8	DnaJ homolog subfamily B member 14	AT5G53150.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os03g28310.1	"dnaJ domain containing protein, expressed"	Medtr6g070440.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.203443.1.S1_at	B	B1S	POPTR_0003s17425	POPTR_0003s17425 (4:197)	NA	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT3G29670.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g57480.1	"transferase family protein, putative, expressed"	Medtr3g030230.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203466.1.S1_at	B	B2S	POPTR_0003s17890	POPTR_0001s14760 (1:794)//POPTR_0003s17890 (8:689)	scaffold_3:17133671-17134403(+) (11)	NA	NA	NA	AT1G80700.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80980.1); Has 476 Blast hits to 340 proteins in 85 species: Archae - 2; Bacteria - 44; Metazoa - 84; Fungi - 36; Plants - 40; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink). 	LOC_Os08g17610.1	expressed protein	Medtr8g070810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203467.1.S1_s_at	B	B1S	POPTR_0003s17890	POPTR_0003s17890 (8:429)	scaffold_3:17135133-17135663(+) (11)	NA	NA	NA	AT1G80700.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80980.1); Has 476 Blast hits to 340 proteins in 85 species: Archae - 2; Bacteria - 44; Metazoa - 84; Fungi - 36; Plants - 40; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink). 	LOC_Os08g17610.1	expressed protein	Medtr8g070810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203491.1.S1_at	B	B1S	POPTR_0003s18380	POPTR_0003s18380 (4:1923)	NA	NA	Q8L831	Nudix hydrolase 3	AT1G79690.1	nudix hydrolase homolog 3 	LOC_Os02g55030.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.203499.1.S1_at	B	B1S	POPTR_0003s22150	POPTR_0003s22150 (0:178)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20350.1.A1_at	B	B1S	POPTR_0004s21790	POPTR_0004s21790 (5:243)	NA	NA	Q99JW2	Aminoacylase-1	AT4G38220.2	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046740.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.203501.1.S1_at	B	B2S	POPTR_0108s00210	POPTR_0108s00210 (8:31)//POPTR_0108s00220 (8:31)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g009850.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203504.1.S1_at	B	B3S	POPTR_0003s22150	POPTR_0003s22150 (7:139)//POPTR_0003s22200 (0:41)//POPTR_0108s00250 (0:41)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203504.1.S1_x_at	B	B3S	POPTR_0003s22150	POPTR_0003s22150 (7:139)//POPTR_0003s22200 (0:41)//POPTR_0108s00250 (0:41)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203506.1.S1_s_at	B	B4S	POPTR_0003s22230	POPTR_0003s22400 (0:181)//POPTR_0003s22380 (0:181)//POPTR_0003s20510 (0:181)//POPTR_0003s22230 (4:147)	scaffold_3:20086433-20086592(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203511.1.S1_at	B	B1S	POPTR_0003s22320	POPTR_0003s22320 (5:77)	scaffold_3:20146745-20147077(+) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010560.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203514.1.S1_at	B	B1S	POPTR_0003s22360	POPTR_0003s22360 (8:472)	scaffold_3:20191933-20192502(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20352.1.S1_at	B	B1S	POPTR_0011s13940	POPTR_0011s13940 (2:1492)	NA	NA	Q8W4D8	FHA domain-containing protein DDL	AT3G20550.1	SMAD/FHA domain-containing protein  	LOC_Os05g46780.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g064260.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20353.1.A1_s_at	B	B1S	POPTR_0010s05340	POPTR_0010s05340 (8:759)	NA	NA	Q84JS6	Homeobox protein knotted-1-like 6	AT1G23380.2	KNOTTED1-like homeobox gene 6 	LOC_Os03g51690.2	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.20355.1.A1_at	B	B1S	POPTR_0017s02420	POPTR_0017s02420 (8:464)	NA	NA	Q96NB3	Zinc finger protein 830	AT3G02860.2	zinc ion binding 	LOC_Os05g41530.1	"ZOS5-11 - C2H2 zinc finger protein, expressed"	Medtr5g085630.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203570.1.S1_s_at	B	B1A	POPTR_0003s19200	POPTR_0003s19200 (3:192)	scaffold_3:18006890-18007351(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203581.1.S1_at	B	B2S	POPTR_0003s18960	POPTR_0003s18970 (1:1975)//POPTR_0003s18960 (1:1733)	scaffold_393:16091-16126(+) (10)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203592.1.S1_at	B	B2S	POPTR_0003s18590	POPTR_0003s18590 (8:311)//POPTR_0003s18600 (0:311)	NA	NA	P13254	Methionine gamma-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.203601.1.S1_at	B	B5S	POPTR_0003s18400	POPTR_0003s18410 (0:3164)//POPTR_0075s00220 (0:749)//POPTR_0075s00230 (0:233)//POPTR_0075s00210 (4:164)//POPTR_0003s18400 (4:104)	NA	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os02g56420.1	"OsWAK23 - OsWAK short gene, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203601.1.S1_x_at	B	B5S	POPTR_0003s18400	POPTR_0003s18410 (0:3164)//POPTR_0075s00220 (0:749)//POPTR_0075s00230 (0:233)//POPTR_0075s00210 (4:164)//POPTR_0003s18400 (4:104)	NA	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os02g56420.1	"OsWAK23 - OsWAK short gene, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203644.1.S1_at	B	B1S	POPTR_0003s21550	POPTR_0003s21550 (4:188)	scaffold_3:19672241-19672839(-) (9)	NA	NA	NA	AT4G10620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	NA	NA	Medtr4g101260.1	"GTP binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203654.1.S1_at	B	B1S	POPTR_0003s21760	POPTR_0003s21760 (6:707)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.203685.1.S1_at	B	B2S	POPTR_0004s01700	POPTR_0004s01700 (8:142)//POPTR_0021s00950 (0:49)	scaffold_4:1023205-1023356(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203707.1.S1_at	B	B1S	POPTR_0004s02120	POPTR_0004s02120 (0:488)	scaffold_4:1316624-1321026(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203712.1.S1_at	B	B1S	POPTR_0004s02220	POPTR_0004s02220 (2:47)	scaffold_4:1375396-1375936(-) (11)	NA	NA	NA	AT4G21215.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr5g005770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203723.1.S1_x_at	B	B2S	POPTR_0004s02690	POPTR_0004s02690 (2:293)//POPTR_0004s02700 (0:291)	NA	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr4g124620.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203740.1.S1_at	B	B1S	POPTR_0004s03080	POPTR_0004s03080 (8:1383)	scaffold_4:2066630-2068013(-) (9)	NA	NA	NA	AT4G21320.1	Aldolase-type TIM barrel family protein 	LOC_Os06g46900.1	"phosphosulfolactate synthase-related protein, putative, expressed"	NA	NA	GO:0019295|coenzyme M biosynthetic process	NA	NA
PtpAffx.203761.1.S1_at	B	B1S	POPTR_0004s03550	POPTR_0004s03550 (1:58)	scaffold_4:2459885-2460103(-) (11)	NA	Q9S9T7	Vacuolar protein sorting-associated protein 28 homolog 2	AT4G05000.2	Vacuolar protein sorting-associated protein VPS28 family protein 	LOC_Os01g57260.1	"vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed"	Medtr4g125370.1	"Vacuolar protein sorting-associated, VPS28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203766.1.S1_at	B	B1S	POPTR_0004s03660	POPTR_0004s03660 (8:327)	NA	NA	Q38945	PAP-specific phosphatase HAL2-like	AT5G54390.1	HAL2-like 	LOC_Os02g56170.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.203771.1.S1_at	B	B1S	POPTR_0004s03780	POPTR_0004s03780 (5:1506)	NA	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203772.1.S1_at	B	B1S	POPTR_0004s03790	POPTR_0004s03790 (3:1509)	scaffold_4:2658410-2660316(+) (9)	NA	Q9FNI6	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2	AT1G61140.3	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related 	LOC_Os01g57110.2	"SNF2 family N-terminal domain containing protein, expressed"	Medtr2g014500.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.203788.1.S1_at	B	B1S	POPTR_0004s06800	POPTR_0004s06800 (8:1600)	scaffold_4:5436141-5437741(-) (9)	NA	O81242	DNA-binding protein RHL1	AT1G48380.1	root hair initiation protein root hairless 1 (RHL1) 	LOC_Os07g07580.3	"ROOT HAIRLESS 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203812.1.S1_at	B	B1S	POPTR_0004s06060	POPTR_0004s06060 (8:605)	NA	NA	NA	NA	AT1G17030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19030.1	expressed protein	Medtr1g105900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203859.1.S1_at	B	B1A	POPTR_0004s05060	POPTR_0004s05060 (5:178)	scaffold_4:3802776-3803426(-) (11)	NA	NA	NA	AT1G28540.1	unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g33340.3	expressed protein	Medtr2g018440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203879.1.S1_at	B	B1S	POPTR_0004s04640	POPTR_0004s04640 (8:684)	NA	NA	Q54FE6	Mitochondrial substrate carrier family protein S	AT2G33820.1	Mitochondrial substrate carrier family protein 	LOC_Os11g23170.2	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203896.1.S1_at	B	B1S	POPTR_0004s04290	POPTR_0004s04290 (8:1108)	scaffold_4:3080227-3081376(+) (9)	NA	NA	NA	AT1G78922.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203905.1.S1_at	B	B1S	POPTR_0004s04090	POPTR_0004s04090 (4:132)	NA	NA	Q96376	S-linalool synthase	AT1G61120.1	terpene synthase 04 	LOC_Os04g52230.1	"ent-kaurene synthase, chloroplast precursor, putative, expressed"	Medtr2g014530.1	Terpene synthase-like; Terpenoid synthase 	NA	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.203918.1.S1_at	B	B1S	POPTR_0004s09930	POPTR_0004s09930 (1:99)	scaffold_4:8461715-8463561(+) (10)	NA	NA	NA	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os10g35220.1	"KH domain containing protein, putative, expressed"	Medtr6g013130.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.203935.1.S1_at	B	B1S	POPTR_0004s09640	POPTR_0004s09640 (0:841)	NA	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT5G38210.1	Protein kinase family protein 	LOC_Os01g49529.1	"OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed"	Medtr7g093690.3	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.203937.1.S1_at	B	B2S	POPTR_0004s09560	POPTR_0004s09560 (5:209)//POPTR_0008s21650 (0:204)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203939.1.S1_at	B	B1S	POPTR_0004s09500	POPTR_0004s09500 (2:271)	scaffold_4:8035642-8036636(+) (10)	NA	Q08BT5	LisH domain and HEAT repeat-containing protein KIAA1468 homolog	AT5G16210.1	HEAT repeat-containing protein 	LOC_Os01g33060.1	"HEAT repeat family protein, putative, expressed"	Medtr7g093790.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203963.1.S1_at	B	B1S	POPTR_0004s08980	POPTR_0004s08980 (8:1902)	scaffold_4:7554397-7556299(+) (9)	NA	Q3AF87	Valyl-tRNA synthetase	AT5G16715.1	ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os03g48850.2	"valyl-tRNA synthetase, putative, expressed"	Medtr1g129510.1	"Isoleucyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.203972.1.S1_at	B	B2S	POPTR_0017s03070	POPTR_0004s08750 (3:114)//POPTR_0017s03070 (7:114)	NA	NA	O22193	U-box domain-containing protein 4	AT3G03440.1	ARM repeat superfamily protein 	LOC_Os01g02200.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g087030.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203975.1.S1_at	B	B1S	POPTR_0004s08710	POPTR_0004s08710 (6:1615)	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.203979.1.S1_at	B	B1S	POPTR_0004s08580	POPTR_0004s08580 (8:33)	NA	NA	Q01831	DNA repair protein complementing XP-C cells	AT5G16630.2	DNA repair protein Rad4 family 	LOC_Os08g33082.1	"DNA-repair protein complementing XP-C cells, putative, expressed"	Medtr5g086100.1	DNA repair protein Rad4 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.204002.1.S1_at	B	B1S	POPTR_0004s08070	POPTR_0004s08070 (4:213)	scaffold_4:6585192-6587507(-) (9)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT5G16560.1	Homeodomain-like superfamily protein 	LOC_Os09g23200.1	"KANADI1, putative"	Medtr3g087010.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204008.1.S1_s_at	B	B1S	POPTR_0004s07940	POPTR_0004s07940 (7:580)	NA	NA	O24301	Sucrose synthase 2	AT1G73370.1	sucrose synthase 6 	LOC_Os04g24430.1	"sucrose synthase, putative, expressed"	Medtr5g084740.1	Sucrose synthase; N-6 Adenine-specific DNA methylase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.204018.1.S1_at	B	B1S	POPTR_0004s07680	POPTR_0004s07680 (7:471)	scaffold_4:6297435-6298098(+) (10)	NA	NA	NA	AT3G02700.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204023.1.S1_at	B	B2S	POPTR_0004s07570	POPTR_0004s07560 (6:101)//POPTR_0004s07570 (7:96)	NA	NA	Q00416	Helicase SEN1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g51090.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204034.1.S1_at	B	B1S	POPTR_0004s07210	POPTR_0004s07210 (5:891)	NA	NA	Q3EDL4	Probable serine/threonine-protein kinase At1g01540	AT1G01540.2	Protein kinase superfamily protein 	LOC_Os03g03410.1	"serine/threonine-protein kinase, putative, expressed"	Medtr7g088440.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204045.1.S1_at	B	B1S	POPTR_0004s06880	POPTR_0004s06880 (8:435)	NA	NA	Q96HI0	Sentrin-specific protease 5	AT4G15880.1	Cysteine proteinases superfamily protein 	LOC_Os03g22400.1	"ulp1 protease family protein, putative, expressed"	Medtr8g138660.1	"Intermediate filament protein; Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.204048.1.S1_at	B	B1S	POPTR_0004s06950	POPTR_0004s06950 (6:505)	scaffold_4:5769078-5769828(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204049.1.S1_at	B	B1S	POPTR_0004s06910	POPTR_0004s06910 (5:176)	NA	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.1	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204085.1.S1_at	B	B1S	POPTR_0004s13410	POPTR_0004s13410 (5:101)	NA	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204086.1.S1_at	B	B1S	POPTR_0004s13420	POPTR_0004s13420 (8:357)	scaffold_4:13467220-13467885(+) (10)	NA	Q54HW1	26S proteasome non-ATPase regulatory subunit 10	AT3G28880.1	Ankyrin repeat family protein 	LOC_Os12g38460.1	RNA recognition motif family protein	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.204095.1.S1_at	B	B1S	POPTR_0004s13590	POPTR_0004s13590 (8:453)	scaffold_4:13919162-13919684(+) (11)	NA	Q4PSU4	Agamous-like MADS-box protein AGL61	AT2G24840.1	AGAMOUS-like 61 	LOC_Os06g22760.1	OsMADS71 - MADS-box family gene with M-alpha type-box	Medtr3g109260.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.2041.1.S1_at	B	B1A	POPTR_0009s01630	POPTR_0009s01630 (8:503)	NA	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT2G28315.1	Nucleotide/sugar transporter family protein 	LOC_Os02g41780.1	"transporter-related, putative, expressed"	Medtr2g110080.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204108.1.S1_s_at	B	B1S	POPTR_0004s14050	POPTR_0004s14050 (7:347)	scaffold_4:14527314-14527785(+) (11)	NA	NA	NA	AT1G30260.1	BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g085420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204109.1.S1_at	B	B1S	POPTR_0004s14070	POPTR_0004s14070 (8:765)	scaffold_4:14543116-14544003(+) (11)	NA	Q9C757	Probable inositol transporter 2	AT1G30220.1	inositol transporter 2 	LOC_Os07g05640.1	"transporter family protein, putative, expressed"	Medtr2g056050.1	Sugar transporter; Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.204134.1.S1_at	B	B1S	POPTR_0005s22180	POPTR_0005s22180 (0:146)	NA	NA	Q84K00	NAC domain-containing protein 78	AT1G34190.1	NAC domain containing protein 17 	LOC_Os09g32040.1	"no apical meristem protein, putative, expressed"	Medtr5g084760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.204136.1.S1_at	B	B2S	POPTR_0004s12140	POPTR_0004s08090 (0:839)//POPTR_0004s12140 (1:839)	scaffold_4:11059711-11067052(+) (9)	NA	Q8BIV3	Ran-binding protein 6	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204149.1.S1_at	B	B1S	POPTR_0004s12320	POPTR_0004s12320 (8:341)	scaffold_4:11419781-11420792(+) (10)	NA	NA	NA	AT3G29310.1	calmodulin-binding protein-related 	NA	NA	Medtr7g012190.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204211.1.S1_at	B	B1S	POPTR_0004s16010	POPTR_0004s16010 (1:70)	scaffold_4:16480410-16481078(+) (9)	NA	NA	NA	AT1G11760.1	MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g40070.1	expressed protein	Medtr3g159700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204217.1.S1_at	B	B2S	POPTR_0004s16190	POPTR_0004s16190 (6:492)//POPTR_0004s16180 (0:484)	NA	NA	O64600	F-box protein At1g70360	AT1G70360.1	F-box family protein 	LOC_Os03g12940.1	"OsFBO13 - F-box and other domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204226.1.S1_at	B	B1S	POPTR_0004s16360	POPTR_0004s16360 (5:366)	scaffold_4:16844271-16844743(+) (10)	NA	Q9SIJ9	Putative pectinesterase 11	AT2G21610.1	pectinesterase 11 	LOC_Os01g44340.1	"pectinesterase, putative, expressed"	Medtr6g013310.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.204236.1.S1_at	B	B1S	POPTR_0004s16580	POPTR_0004s16580 (8:288)	NA	NA	NA	NA	AT4G39140.5	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204239.1.S1_at	B	B1S	POPTR_0004s16650	POPTR_0004s16650 (8:337)	scaffold_4:17054224-17054639(+) (11)	NA	NA	NA	AT2G16390.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os07g25390.1	"DRD1, putative, expressed"	Medtr7g027270.1	"SNF2-related; Helicase, C-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204257.1.S1_at	B	B1S	POPTR_0004s17070	POPTR_0004s17070 (8:263)	scaffold_4:17422035-17422372(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204304.1.S1_s_at	B	B2S	POPTR_0004s18040	POPTR_0004s18050 (2:770)//POPTR_0004s18040 (7:703)	scaffold_4:18046503-18049984(-) (9)	NA	NA	NA	AT2G20990.3	synaptotagmin A 	LOC_Os01g60350.1	hypothetical protein	Medtr1g031480.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204313.1.S1_at	B	B2S	POPTR_0004s18300	POPTR_0004s18300 (5:226)//POPTR_0004s18310 (1:67)	NA	NA	NA	NA	AT5G05320.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g05880.1	"monooxygenase, putative, expressed"	Medtr5g013370.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204319.1.S1_at	B	B1S	POPTR_0004s18460	POPTR_0004s18460 (5:218)	scaffold_4:18348244-18348749(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204327.1.S1_s_at	B	B1S	POPTR_0004s18560	POPTR_0004s18560 (5:263)	scaffold_4:18412638-18412964(-) (10)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G31790.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g137110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204338.1.S1_at	B	B2S	POPTR_0004s18820	POPTR_0004s18810 (0:415)//POPTR_0004s18820 (3:107)	scaffold_4:18563915-18565097(-) (11)	NA	NA	NA	AT1G29420.1	SAUR-like auxin-responsive protein family  	LOC_Os08g43700.1	"OsSAUR36 - Auxin-responsive SAUR gene family member, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204359.1.S1_s_at	B	B2S	POPTR_0004s19610	POPTR_0009s14760 (0:1879)//POPTR_0004s19610 (5:567)	scaffold_4:19394863-19398621(-) (11)	NA	Q66GI4	"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial"	AT4G21900.1	proteinaceous RNase P 3 	LOC_Os01g73690.1	"pentatricopeptide, putative, expressed"	Medtr2g122420.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204368.1.S1_at	B	B1S	POPTR_0009s16980	POPTR_0009s16980 (8:366)	NA	NA	NA	NA	AT4G35320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g48470.1	expressed protein	Medtr5g106850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204376.1.S1_at	B	B1S	POPTR_0009s16860	POPTR_0009s16860 (8:902)	scaffold_9:12728102-12738787(-) (9)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204383.1.S1_at	B	B2S	POPTR_0004s21500	POPTR_0009s16750 (2:541)//POPTR_0004s21500 (2:217)	NA	NA	Q9UMX0	Ubiquilin-1	AT2G17200.1	ubiquitin family protein 	LOC_Os10g39620.2	"ubiquitin family protein, putative, expressed"	Medtr5g023730.1	UV excision repair protein Rad23; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204385.1.S1_at	B	B1S	POPTR_0009s16730	POPTR_0009s16730 (6:170)	NA	NA	Q9SFW6	Cyclin-B2-4	AT1G76310.1	CYCLIN B2;4 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.204397.1.S1_at	B	B1S	POPTR_0009s16470	POPTR_0009s16470 (8:231)	NA	NA	O65199	"Superoxide dismutase [Cu-Zn], chloroplastic"	AT2G28190.1	copper/zinc superoxide dismutase 2 	LOC_Os08g44770.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr4g076170.1	"Superoxide dismutase, copper/zinc binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0015934|large ribosomal subunit
PtpAffx.204415.1.S1_at	B	B1S	POPTR_0004s20840	POPTR_0004s20840 (0:451)	scaffold_9:12301398-12301877(-) (11)	NA	Q0WR59	Probable inactive receptor kinase At5g10020	AT2G27060.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g20450.1	expressed protein	Medtr5g094860.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.204422.1.S1_at	B	B1S	POPTR_0753s00210	POPTR_0753s00210 (8:462)	scaffold_753:7354-7902(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT4G14480.1	Protein kinase superfamily protein 	LOC_Os06g29120.2	"STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr2g121220.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204433.1.S1_at	B	B1S	POPTR_0009s15750	POPTR_0009s15750 (8:394)	NA	NA	Q3T0Q6	Cellular nucleic acid-binding protein	AT3G43590.1	zinc knuckle (CCHC-type) family protein 	LOC_Os11g36480.2	"zinc knuckle domain containing protein, expressed"	Medtr3g110690.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204437.1.S1_x_at	B	B2S	POPTR_0009s15680	POPTR_0009s15680 (7:150)//POPTR_0231s00230 (4:149)	NA	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT1G16130.1	wall associated kinase-like 2 	LOC_Os09g38800.1	OsWAK88 - OsWAK pseudogene	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204439.1.S1_at	B	B3S	POPTR_0009s15660	POPTR_0009s15710 (0:3162)//POPTR_0009s15650 (0:3039)//POPTR_0009s15660 (8:1321)	scaffold_9:12064927-12066586(-) (10)	NA	NA	NA	AT2G27170.2	Structural maintenance of chromosomes (SMC) family protein 	LOC_Os02g04080.1	"chromosome segregation protein sudA, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204460.1.S1_at	B	B1A	POPTR_0009s15300	POPTR_0009s15300 (4:141)	scaffold_9:11874875-11875077(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204468.1.S1_at	B	B1S	POPTR_0009s15120	POPTR_0009s15120 (3:186)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204504.1.S1_at	B	B2S	POPTR_0009s14170	POPTR_0009s14160 (5:1444)//POPTR_0009s14170 (6:1296)	scaffold_9:11159593-11163789(-) (11)	NA	Q9LEL5	3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr3g105610.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.204546.1.S1_at	B	B1S	POPTR_0009s13330	POPTR_0009s13330 (6:541)	scaffold_9:10643810-10644434(+) (10)	NA	NA	NA	AT4G38700.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g59440.1	"dirigent, putative, expressed"	Medtr5g103760.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204560.1.S1_at	B	B1S	POPTR_0004s17320	POPTR_0004s17320 (0:103)	scaffold_9:10477810-10477935(+) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT4G34770.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02520.1	"OsSAUR31 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g098320.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204565.1.S1_at	B	B1S	POPTR_0009s12980	POPTR_0009s12980 (6:210)	scaffold_9:10463896-10465135(-) (9)	NA	P33080	Auxin-induced protein X10A	AT5G18020.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02520.1	"OsSAUR31 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g098370.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20458.1.S1_at	B	B1S	POPTR_0001s07990	POPTR_0001s07990 (2:76)	scaffold_1:6050338-6050776(+) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.204607.1.S1_s_at	B	B1S	POPTR_0009s12120	POPTR_0009s12120 (5:119)	scaffold_9:9942700-9943146(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204640.1.S1_at	B	B1S	POPTR_0009s11350	POPTR_0009s11350 (5:433)	scaffold_9:9462804-9463347(-) (11)	NA	Q9XIM8	Pentatricopeptide repeat-containing protein At2g15980	AT2G15980.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g21930.3	"PPR repeat containing protein, expressed"	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204651.1.S1_at	B	B1S	POPTR_0009s10990	POPTR_0009s10990 (5:2310)	scaffold_9:9279893-9282697(-) (9)	NA	O74503	Upstream activation factor subunit spp27	AT1G49520.1	SWIB complex BAF60b domain-containing protein 	LOC_Os03g55570.1	"upstream activation factor subunit spp27, putative, expressed"	Medtr5g017990.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204665.1.S1_at	B	B2S	POPTR_0009s10570	POPTR_0004s14890 (0:135)//POPTR_0009s10570 (5:133)	NA	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204665.1.S1_x_at	B	B2S	POPTR_0009s10570	POPTR_0004s14890 (0:150)//POPTR_0009s10570 (6:148)	NA	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204709.1.S1_at	B	B1S	POPTR_0009s09540	POPTR_0009s09540 (8:337)	scaffold_9:8399314-8399742(-) (9)	NA	NA	NA	AT3G19540.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204711.1.S1_at	B	B1S	POPTR_0009s09500	POPTR_0009s09500 (7:419)	scaffold_9:8376902-8377411(-) (11)	NA	NA	NA	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC232874_16.1	"VEP1 ; binding, putative AC232874.1 54537-55990 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204726.1.S1_at	B	B1S	POPTR_0009s09190	POPTR_0009s09190 (3:119)	scaffold_9:8203773-8204341(-) (11)	NA	Q9LJN4	Probable beta-D-xylosidase 5	AT3G19620.1	Glycosyl hydrolase family protein 	LOC_Os04g54810.1	"beta-D-xylosidase, putative, expressed"	Medtr2g008400.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.204731.1.S1_at	B	B1S	POPTR_0009s09120	POPTR_0009s09120 (5:112)	scaffold_9:8180929-8181191(+) (11)	NA	NA	NA	AT1G49980.1	DNA/RNA polymerases superfamily protein 	NA	NA	Medtr5g005380.1	UMUC-like DNA-repair protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204732.1.S1_at	B	B1S	POPTR_0009s09110	POPTR_0009s09110 (1:416)	NA	NA	Q43295	"Adenylyl-sulfate kinase 1, chloroplastic"	AT2G14750.1	APS kinase 	LOC_Os11g41650.2	"adenylyl-sulfate kinase, putative, expressed"	Medtr8g101540.1	Adenylylsulfate kinase 	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.204751.1.S1_at	B	B2S	POPTR_0009s08790	POPTR_0009s08790 (6:407)//POPTR_0001s29620 (2:317)	NA	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.204770.1.S1_at	B	B1S	POPTR_0009s08330	POPTR_0009s08330 (0:3)	scaffold_9:7657838-7658029(+) (11)	NA	B5FZA8	LYR motif-containing protein 4	AT5G61220.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os08g14070.1	"LYR motif containing protein, putative, expressed"	Medtr7g012110.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204808.1.S1_at	B	B1S	POPTR_0009s07480	POPTR_0009s07480 (6:536)	scaffold_9:6970786-6971732(-) (10)	NA	NA	NA	AT5G19430.1	RING/U-box superfamily protein 	LOC_Os01g72480.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g100950.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204854.1.S1_at	B	B1S	POPTR_0009s06230	POPTR_0009s06230 (8:237)	scaffold_9:6060575-6060941(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204889.1.S1_at	B	B1S	POPTR_0009s05520	POPTR_0009s05520 (1:218)	scaffold_9:5616414-5617037(-) (9)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr5g008940.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.204909.1.S1_at	B	B1S	POPTR_0009s05070	POPTR_0009s05070 (8:60)	scaffold_9:5245423-5245523(-) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os09g02830.1	OsMADS78 - MADS-box family gene with M-alpha type-box	Medtr3g109260.1	"Transcription factor, MADS-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204910.1.S1_at	B	B1S	POPTR_0009s05070	POPTR_0009s05070 (5:229)	scaffold_9:5245017-5245362(-) (11)	NA	Q9FKK2	Agamous-like MADS-box protein AGL62	AT5G60440.1	AGAMOUS-like 62 	LOC_Os09g02830.1	OsMADS78 - MADS-box family gene with M-alpha type-box	Medtr3g109260.1	"Transcription factor, MADS-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204949.1.S1_at	B	B2S	POPTR_0009s04140	POPTR_0009s04140 (5:1773)//POPTR_0009s04150 (4:165)	scaffold_9:4656877-4661635(-) (9)	NA	NA	NA	AT1G07480.2	"Transcription factor IIA, alpha/beta subunit "	LOC_Os05g22670.1	"transcription factor IIA large subunit, putative, expressed"	Medtr2g117270.1	"Transcription initiation factor IIA, gamma subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204949.1.S1_x_at	B	B2S	POPTR_0009s04140	POPTR_0009s04140 (7:1773)//POPTR_0009s04150 (3:165)	scaffold_9:4656877-4661635(-) (10)	NA	NA	NA	AT1G07480.2	"Transcription factor IIA, alpha/beta subunit "	LOC_Os05g22670.1	"transcription factor IIA large subunit, putative, expressed"	Medtr2g117270.1	"Transcription initiation factor IIA, gamma subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204996.1.S1_at	B	B1S	POPTR_0009s03010	POPTR_0009s03010 (3:172)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g080430.1	"Glycoside hydrolase, family 20; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205015.1.S1_at	B	B1S	POPTR_0009s02710	POPTR_0009s02710 (7:454)	NA	NA	Q2YDP3	Dr1-associated corepressor	AT3G12480.1	"nuclear factor Y, subunit C11 "	LOC_Os05g41450.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g044480.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.205056.1.S1_at	B	B1S	POPTR_0009s01660	POPTR_0009s01660 (8:1324)	scaffold_9:2191499-2192823(+) (9)	NA	Q3EDG5	Protein-tyrosine sulfotransferase	AT1G08030.1	tyrosylprotein sulfotransferase 	LOC_Os06g06370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205069.1.S1_at	B	B1S	POPTR_0009s01310	POPTR_0009s01310 (7:258)	scaffold_9:1580496-1580806(-) (11)	NA	NA	NA	AT3G45020.1	Ribosomal L18p/L5e family protein 	LOC_Os09g37740.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr7g096680.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205077.1.S1_at	B	B1S	POPTR_0009s01120	POPTR_0009s01120 (3:840)	scaffold_9:1258399-1260817(-) (10)	NA	NA	NA	AT2G28150.1	Domain of unknown function (DUF966) 	LOC_Os03g48600.9	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g076240.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205096.1.S1_at	B	B1S	POPTR_0009s00270	POPTR_0009s00270 (0:142)	scaffold_9:712184-712339(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205097.1.S1_at	B	B1S	POPTR_0009s00640	POPTR_0009s00640 (8:567)	scaffold_9:678623-679118(-) (9)	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.2	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205102.1.S1_x_at	B	B1S	POPTR_0007s08900	POPTR_0007s08900 (8:474)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.205104.1.S1_at	B	B2S	POPTR_0005s06110	POPTR_0231s00250 (8:703)//POPTR_0005s06110 (8:702)	scaffold_231:40909-41611(+) (11)//scaffold_5:4023850-4024551(+) (11)	NA	O19922	ATP-dependent zinc metalloprotease FtsH	AT5G64580.1	AAA-type ATPase family protein 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr3g143610.1	"Flagellar basal body rod protein; AAA ATPase, central region; Peptidase M41, FtsH extracellular "	NA	GO:0005524|ATP binding	NA
PtpAffx.205114.1.S1_at	B	B2S	POPTR_0005s06300	POPTR_0185s00210 (8:83)//POPTR_0005s06300 (8:83)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC148178_5.1	NB-ARC; AAA ATPase AC148178.35 56164-46899 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.205152.1.S1_at	B	B1S	POPTR_0005s07080	POPTR_0005s07080 (3:121)	scaffold_5:4741427-4741881(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205156.1.S1_at	B	B1S	POPTR_0005s07180	POPTR_0005s07180 (8:884)	scaffold_5:4827999-4828947(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205179.1.S1_at	B	B1S	POPTR_0005s07770	POPTR_0005s07770 (6:281)	NA	NA	Q94FB9	ABC transporter D family member 1	AT4G39850.1	peroxisomal ABC transporter 1 	LOC_Os01g73530.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g101500.1	Peroxysomal long chain fatty acyl transporter 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.205198.1.S1_at	B	B1S	POPTR_0005s08170	POPTR_0005s08170 (8:1429)	scaffold_5:5619577-5620967(-) (9)	NA	Q9LX20	Aspartic proteinase-like protein 1	AT5G10080.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g51540.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr3g101120.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20520.1.S1_at	B	B1S	POPTR_0001s13070	POPTR_0001s13070 (6:353)	scaffold_1:10161980-10162573(+) (11)	NA	Q5W7F2	ADP-ribosylation factor GTPase-activating protein AGD3	AT5G13300.1	ARF GTPase-activating protein 	LOC_Os09g33600.1	"ARF GTPase-activating domain-containing protein, putative, expressed"	Medtr7g020730.1	Arf GTPase activating protein; BAR; Pleckstrin homology-type 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.205233.1.S1_at	B	B1S	POPTR_0005s09030	POPTR_0005s09030 (8:411)	scaffold_5:6341276-6341758(-) (10)	NA	NA	NA	AT2G35970.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os12g06260.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g107350.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.205236.1.S1_at	B	B1S	POPTR_0005s09120	POPTR_0005s09120 (7:580)	scaffold_5:6382844-6385737(+) (10)	NA	NA	NA	AT5G08340.2	Nucleotidylyl transferase superfamily protein 	LOC_Os03g58710.2	"riboflavin biosynthesis protein-related, putative, expressed"	Medtr1g143840.1	"riboflavin biosynthesis protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205245.1.S1_at	B	B1S	POPTR_0005s09340	POPTR_0005s09340 (8:1818)	scaffold_5:6512677-6514863(-) (11)	NA	Q9ATE5	MADS-box protein FBP24	AT5G23260.2	K-box region and MADS-box transcription factor family protein  	LOC_Os02g07430.2	"OsMADS29 - MADS-box family gene with MIKCc type-box, expressed"	Medtr1g046070.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.205250.1.S1_x_at	B	B9S	POPTR_0011s02690	POPTR_0225s00210 (0:211)//POPTR_0009s05880 (0:211)//POPTR_0018s04940 (7:211)//POPTR_0011s02690 (7:211)//POPTR_0001s18480 (0:211)//POPTR_0005s26060 (5:211)//POPTR_0002s22010 (2:205)//POPTR_0001s27340 (5:197)//POPTR_0003s03110 (0:118)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205303.1.S1_at	B	B1S	POPTR_0005s10550	POPTR_0005s10550 (2:26)	scaffold_5:7589480-7589685(-) (9)	NA	Q9SD02	Probable protein phosphatase 2C 47	AT3G51470.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr5g024330.1	Protein phosphatase 2C; C-type lectin; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205303.1.S1_x_at	B	B1S	POPTR_0005s10550	POPTR_0005s10550 (2:33)	NA	NA	Q9SD02	Probable protein phosphatase 2C 47	AT3G51470.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr5g024330.1	Protein phosphatase 2C; C-type lectin; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205363.1.S1_at	B	B1S	POPTR_0001s38890	POPTR_0001s38890 (0:9)	scaffold_5:16514075-16514395(-) (11)	NA	Q6XKE6	Genome polyprotein	NA	NA	NA	NA	Medtr5g062290.1	RNA-directed DNA polymerase (Reverse transcriptase) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205373.1.S1_at	B	B1S	POPTR_0005s18700	POPTR_0005s18700 (5:234)	scaffold_5:16938847-16939133(-) (10)	NA	Q9SJT0	Probable receptor-like protein kinase At2g21480	AT2G21480.1	Malectin/receptor-like protein kinase family protein 	LOC_Os03g03280.1	"TKL_IRAK_CrRLK1L-1.6 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g040400.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2054.1.A1_at	B	B1S	POPTR_0008s13150	POPTR_0008s13150 (5:198)	NA	NA	NA	NA	AT1G70750.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205400.1.S1_at	B	B1S	POPTR_0005s19210	POPTR_0005s19210 (6:387)	scaffold_5:17865339-17865963(-) (10)	NA	Q9FJX6	Formin-like protein 6	AT5G67470.1	formin homolog 6 	LOC_Os10g20710.1	"formin-like protein 6 precursor, putative, expressed"	Medtr5g015760.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205403.1.S1_at	B	B1S	POPTR_0005s19260	POPTR_0005s19260 (0:42)	scaffold_5:17973329-17973417(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205412.1.S1_at	B	B1S	POPTR_0005s19390	POPTR_0005s19390 (8:498)	scaffold_5:18212932-18213455(+) (9)	NA	A4GYS0	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic"	ATCG00500.1	acetyl-CoA carboxylase carboxyl transferase subunit beta 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205415.1.S1_x_at	B	B1S	POPTR_0013s07260	POPTR_0013s07260 (2:522)	NA	NA	A4GYX4	Putative membrane protein ycf1	ATCG01130.1	Ycf1 protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205428.1.S1_at	B	B1S	POPTR_0005s19570	POPTR_0005s19570 (4:326)	scaffold_5:18452983-18454156(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205432.1.S1_at	B	B1S	POPTR_0005s19670	POPTR_0005s19670 (8:455)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205435.1.S1_at	B	B3S	POPTR_0004s06825	POPTR_0017s07950 (1:340)//POPTR_0004s06825 (7:340)//POPTR_0015s03660 (0:322)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205451.1.S1_at	B	B1A	POPTR_0005s17545	POPTR_0005s17545 (3:226)	scaffold_5:15121687-15124130(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205453.1.S1_at	B	B1S	POPTR_0005s17530	POPTR_0005s17530 (6:1142)	scaffold_5:15108448-15111837(-) (10)	NA	Q38813	"Chaperone protein dnaJ 1, mitochondrial"	AT1G28210.1	DNAJ heat shock family protein 	LOC_Os06g11440.2	"transposon protein, putative, Mutator sub-class, expressed"	Medtr5g074350.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.205454.1.S1_at	B	B1S	POPTR_0005s17520	POPTR_0005s17520 (7:551)	NA	NA	Q9FZ95	Purine permease 3	AT1G28220.1	purine permease 3 	LOC_Os09g29239.1	"purine permease, putative, expressed"	Medtr3g150070.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.205459.1.S1_x_at	B	B1S	POPTR_0009s00270	POPTR_0009s00270 (0:236)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20549.1.S1_at	B	B1S	POPTR_0014s11590	POPTR_0014s11590 (7:295)	scaffold_14:8586827-8587304(-) (9)	NA	P24068	Ocs element-binding factor 1	AT3G62420.1	basic region/leucine zipper motif 53 	LOC_Os12g37415.1	expressed protein	Medtr1g106720.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.205519.1.S1_at	B	B1S	POPTR_0005s16050	POPTR_0005s16050 (4:747)	NA	NA	NA	NA	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os11g33290.1	"transposon protein, putative, unclassified"	Medtr1g105680.1	"transposase related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205533.1.S1_at	B	B1S	POPTR_0005s20000	POPTR_0005s20000 (6:314)	scaffold_5:19001929-19008361(+) (11)	NA	NA	NA	AT1G21830.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g59420.2	expressed protein	Medtr3g100850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205545.1.S1_at	B	B1S	POPTR_0005s20250	POPTR_0005s20250 (5:306)	scaffold_5:19305343-19305860(-) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT3G47180.1	RING/U-box superfamily protein 	LOC_Os08g43480.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g100770.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205573.1.S1_at	B	B1S	POPTR_0005s20780	POPTR_0005s20780 (7:614)	scaffold_5:19913087-19914044(+) (10)	NA	Q9ZUE0	Proline-rich receptor-like protein kinase PERK12	AT5G56790.1	Protein kinase superfamily protein 	LOC_Os01g65940.1	expressed protein	Medtr2g121520.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.20558.1.A1_at	B	B1S	POPTR_0001s21350	POPTR_0001s21350 (8:469)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205588.1.S1_at	B	B1S	POPTR_0005s21040	POPTR_0005s21040 (7:452)	scaffold_5:20162398-20162964(+) (9)	NA	O49048	Vacuolar protein sorting-associated protein 45 homolog	AT1G77140.1	vacuolar protein sorting 45 	LOC_Os02g24134.1	"Sec1 family transport protein, putative, expressed"	Medtr4g024800.1	Sec1-like protein 	GO:0006904|vesicle docking during exocytosis	NA	NA
PtpAffx.205680.1.S1_at	B	B1A	POPTR_0005s22950	POPTR_0005s22950 (2:269)	scaffold_5:21810010-21810402(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205690.1.S1_at	B	B1S	POPTR_0005s23170	POPTR_0005s23170 (5:119)	NA	NA	Q2MY58	Patatin group A-3	AT3G63200.1	PATATIN-like protein 9 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g086350.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.205702.1.S1_at	B	B1S	POPTR_0005s23390	POPTR_0005s23390 (8:611)	NA	NA	Q9SPL5	Vicilin-like antimicrobial peptides 2-1	AT3G22640.1	cupin family protein 	LOC_Os03g46100.1	"cupin domain containing protein, expressed"	Medtr1g084050.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.205727.1.S1_s_at	B	B1A	POPTR_0005s23790	POPTR_0005s23790 (6:487)	scaffold_5:22535514-22536439(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205740.1.S1_at	B	B1S	POPTR_0005s24070	POPTR_0005s24070 (8:1018)	NA	NA	P16157	Ankyrin-1	AT3G04710.2	ankyrin repeat family protein 	LOC_Os05g01310.1	"ankyrin repeat family protein, putative, expressed"	Medtr8g122240.1	"Zinc finger, DHHC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205781.1.S1_at	B	B1S	POPTR_0005s25160	POPTR_0005s25160 (7:1912)	scaffold_5:23483571-23485708(-) (11)	NA	NA	NA	AT1G19630.1	"cytochrome P450, family 722, subfamily A, polypeptide 1 "	LOC_Os10g23160.1	"ent-kaurenoic acid oxidase 1, putative"	Medtr8g092860.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205788.1.S1_at	B	B1A	POPTR_0005s25320	POPTR_0005s25320 (2:86)	scaffold_5:23619314-23620464(+) (9)	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.205792.1.S1_at	B	B1S	POPTR_0005s25360	POPTR_0005s25360 (1:303)	scaffold_5:23635585-23636094(+) (10)	NA	Q9FMM0	Probable ubiquitin-conjugating enzyme E2 18	AT5G42990.1	ubiquitin-conjugating enzyme 18 	LOC_Os03g47770.1	"ubiquitin-conjugating enzyme E2 W, putative, expressed"	Medtr5g021210.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.205793.1.S1_at	B	B1S	POPTR_0005s25370	POPTR_0005s25370 (4:745)	NA	NA	P74038	Ribosomal RNA small subunit methyltransferase I	AT1G45110.1	Tetrapyrrole (Corrin/Porphyrin) Methylases 	LOC_Os10g27450.2	"tetrapyrrole methylase family protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.205828.1.S1_at	B	B1S	POPTR_0002s02390	POPTR_0002s02390 (1:955)	scaffold_5:24201562-24202277(-) (10)	NA	P48583	ER lumen protein retaining receptor	AT1G75760.1	ER lumen protein retaining receptor family protein 	LOC_Os08g43470.1	"ER lumen protein retaining receptor, putative, expressed"	Medtr3g156420.1	ER lumen protein retaining receptor; Orn/DAP/Arg decarboxylase 2 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
PtpAffx.205837.1.S1_at	B	B1S	POPTR_0005s26310	POPTR_0005s26310 (2:103)	scaffold_5:24382501-24383367(-) (10)	NA	Q5RAG2	Extended synaptotagmin-1	AT1G20080.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g25060.1	"NTMC2Type1.2 protein, putative, expressed"	Medtr1g031480.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205845.1.S1_at	B	B1S	POPTR_0005s26530	POPTR_0005s26530 (3:850)	scaffold_5:24512320-24514039(-) (11)	NA	Q5RFS0	UPF0436 protein C9orf6 homolog	AT1G75980.1	Single hybrid motif superfamily protein 	LOC_Os02g02810.1	expressed protein	Medtr3g157040.1	Single hybrid motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205845.1.S1_x_at	B	B1S	POPTR_0005s26530	POPTR_0005s26530 (4:850)	scaffold_5:24512320-24514039(-) (11)	NA	Q5RFS0	UPF0436 protein C9orf6 homolog	AT1G75980.1	Single hybrid motif superfamily protein 	LOC_Os02g02810.1	expressed protein	Medtr3g157040.1	Single hybrid motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205858.1.S1_at	B	B2S	POPTR_0005s26940	POPTR_1035s00200 (7:324)//POPTR_0005s26940 (7:324)	NA	NA	Q8VXV7	Lysine-specific histone demethylase 1 homolog 1	AT1G62830.1	LSD1-like 1 	LOC_Os02g51880.1	"amine oxidase, putative, expressed"	Medtr3g076130.1	Amine oxidase; SWIRM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205874.1.S1_at	B	B1S	POPTR_0005s27320	POPTR_0005s27320 (8:478)	scaffold_5:25020749-25021311(-) (10)	NA	P56941	Niemann-Pick C1 protein	AT4G38350.1	Patched family protein 	LOC_Os04g47590.1	"niemann-Pick C1 protein precursor, putative, expressed"	Medtr5g106700.1	Sterol-sensing 5TM box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205878.1.S1_at	B	B1A	POPTR_0005s27370	POPTR_0005s27370 (8:678)	scaffold_5:25075381-25076783(+) (10)	NA	Q5XET4	Pentatricopeptide repeat-containing protein At2g01860	AT2G01860.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g02590.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g045430.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205883.1.S1_at	B	B1S	POPTR_0005s27460	POPTR_0005s27460 (6:190)	scaffold_5:25121760-25122077(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g009350.1	"Tyrosine protein kinase, active site "	NA	GO:0005515|protein binding	NA
PtpAffx.205893.1.S1_at	B	B1S	POPTR_0005s27620	POPTR_0005s27620 (8:883)	scaffold_5:25198104-25198989(+) (10)	NA	O22815	MLO-like protein 5	AT2G33670.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr3g160010.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.205905.1.S1_at	B	B1S	POPTR_0005s27880	POPTR_0005s27880 (8:286)	scaffold_5:25352405-25352698(+) (11)	NA	Q8H0U8	DEAD-box ATP-dependent RNA helicase 42	AT1G20920.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g06344.3	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr2g007080.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.205916.1.S1_at	B	B2S	POPTR_0006s00280	POPTR_0016s00300 (1:1218)//POPTR_0006s00280 (8:1194)	NA	NA	P54567	Uncharacterized protein yqkD	AT4G17150.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g40730.1	"protein with a conserved N-terminal region, putative, expressed"	Medtr2g033450.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206064.1.S1_at	B	B1S	POPTR_0006s03810	POPTR_0006s03810 (8:1940)	scaffold_6:2554052-2556615(+) (11)	NA	Q8DJF2	Ribose-5-phosphate isomerase A	AT3G04790.1	"Ribose 5-phosphate isomerase, type A protein "	LOC_Os04g24140.1	"ribose-5-phosphate isomerase A, putative, expressed"	Medtr1g137480.1	Ribose 5-phosphate isomerase 	"GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0009052|""pentose-phosphate shunt, non-oxidative branch"""	GO:0004751|ribose-5-phosphate isomerase activity	NA
PtpAffx.206067.1.S1_at	B	B1S	POPTR_0006s03860	POPTR_0006s03860 (5:462)	scaffold_6:2589613-2590359(-) (10)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	NA	NA	Medtr7g105530.1	Calcium-binding EF-hand; NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206071.1.S1_at	B	B1S	POPTR_0006s03940	POPTR_0006s03940 (5:401)	scaffold_6:2660112-2660558(-) (10)	NA	NA	NA	AT2G41290.1	strictosidine synthase-like 2 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206073.1.S1_at	B	B1S	POPTR_0006s03970	POPTR_0006s03970 (8:1338)	NA	NA	P53780	"Cystathionine beta-lyase, chloroplastic"	AT3G57050.1	cystathionine beta-lyase 	LOC_Os06g07960.1	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.206078.1.S1_at	B	B1S	POPTR_0006s04090	POPTR_0006s04090 (1:851)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os11g34090.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206100.1.S1_x_at	B	B5S	POPTR_0006s04480	POPTR_0006s04480 (5:416)//POPTR_0011s10610 (2:415)//POPTR_0011s10651 (0:409)//POPTR_0081s00240 (2:404)//POPTR_0081s00210 (3:404)	NA	NA	Q9C9H7	Receptor-like protein 12	AT3G28890.2	receptor like protein 43 	LOC_Os01g06836.1	"disease resistance protein SlVe2 precursor, putative"	Medtr5g094280.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.206107.1.S1_at	B	B1S	POPTR_0006s04700	POPTR_0006s04700 (8:244)	scaffold_6:3228199-3228455(-) (11)	NA	Q9SS44	Transcription initiation factor IIB-2	AT3G10330.1	Cyclin-like family protein 	LOC_Os09g36440.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g108460.1	Cyclin-like; ; 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0008270|zinc ion binding||GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.206133.1.S1_at	B	B1S	POPTR_0015s10090	POPTR_0015s10090 (6:345)	scaffold_6:3749432-3749715(-) (9)	NA	Q9SJM0	Callose synthase 10	AT2G36850.1	glucan synthase-like 8 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.206134.1.S1_at	B	B2S	POPTR_0006s05310	POPTR_0006s05315 (3:386)//POPTR_0006s05310 (7:337)	scaffold_6:3751912-3753440(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206160.1.S1_at	B	B1S	POPTR_0006s06850	POPTR_0006s06850 (7:349)	scaffold_6:4958368-4959253(-) (11)	NA	Q43270	Phospholipase D alpha 1	AT5G25370.1	phospholipase D alpha 3 	LOC_Os06g40170.1	"phospholipase D, putative, expressed"	Medtr2g126370.1	"C2; Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206199.1.S1_at	B	B1S	POPTR_0006s07790	POPTR_0006s07790 (7:488)	scaffold_6:5704591-5707763(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206214.1.S1_at	B	B1S	POPTR_0006s08010	POPTR_0006s08010 (2:108)	scaffold_6:5852608-5853365(+) (10)	NA	Q570B4	3-ketoacyl-CoA synthase 10	AT2G26250.1	3-ketoacyl-CoA synthase 10 	LOC_Os03g08360.1	"3-ketoacyl-CoA synthase 10, putative, expressed"	Medtr2g017360.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.20623.1.A1_a_at	B	B1S	POPTR_0010s15500	POPTR_0010s15500 (0:598)	NA	NA	NA	NA	AT1G05760.1	Mannose-binding lectin superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20623.4.S1_at	B	B1S	POPTR_0010s15500	POPTR_0010s15500 (8:673)	NA	NA	NA	NA	AT1G05760.1	Mannose-binding lectin superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206272.1.S1_at	B	B1S	POPTR_0006s09150	POPTR_0006s09150 (8:457)	scaffold_6:6761431-6762084(+) (10)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os05g38230.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.2	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206300.1.S1_at	B	B1S	POPTR_0006s09700	POPTR_0006s09700 (8:541)	NA	NA	Q9LD43	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic"	AT2G38040.2	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206340.1.S1_at	B	B1S	POPTR_0006s10680	POPTR_0006s10680 (4:1361)	NA	NA	NA	NA	AT3G45100.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g16960.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC235487_3.1	"Glycosyl transferase, group 1; Haem peroxidase, plant/fungal/bacterial AC235487.1 8195-11450 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206433.1.S1_at	B	B1S	POPTR_0006s21570	POPTR_0006s21570 (3:140)	scaffold_6:20606811-20607118(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206441.1.S1_x_at	B	B10S	POPTR_0009s05880	POPTR_0225s00210 (2:361)//POPTR_0009s05880 (3:361)//POPTR_0011s02690 (3:361)//POPTR_0001s18480 (0:354)//POPTR_0018s04940 (0:339)//POPTR_0001s27340 (0:293)//POPTR_0002s22010 (0:249)//POPTR_0005s26060 (1:207)//POPTR_0278s00220 (0:197)//POPTR_0003s03110 (0:104)	scaffold_6:20475307-20475668(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206455.1.S1_at	B	B1S	POPTR_0006s21180	POPTR_0006s21180 (8:239)	scaffold_6:20265173-20265481(+) (10)	NA	NA	NA	AT3G11950.2	TRAF-like superfamily protein 	LOC_Os12g08070.1	"TRAF-type zinc finger family protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.206480.1.S1_at	B	B1S	POPTR_0006s20750	POPTR_0006s20750 (1:161)	scaffold_6:19729369-19732943(-) (10)	NA	NA	NA	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g17490.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206490.1.S1_at	B	B2S	POPTR_0006s20500	POPTR_0018s12280 (1:1128)//POPTR_0006s20500 (8:1119)	scaffold_6:19519156-19520398(+) (10)	NA	Q15029	116 kDa U5 small nuclear ribonucleoprotein component	AT1G06220.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os06g40600.1	"elongation factor, putative, expressed"	Medtr8g122550.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.206492.1.S1_at	B	B4S	POPTR_0012s05290	POPTR_0334s00010 (0:492)//POPTR_0015s07960 (0:490)//POPTR_0012s05290 (0:483)//POPTR_0015s01880 (0:477)	scaffold_295:14053-14955(-) (10)//scaffold_6:19453555-19454457(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206501.1.S1_at	B	B1S	POPTR_0002s24600	POPTR_0002s24600 (5:213)	scaffold_6:19289690-19289878(+) (11)	NA	Q6GL77	UBX domain-containing protein 1	AT1G04850.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os02g30180.1	"ZOS2-07 - C2H2 zinc finger protein, expressed"	Medtr4g133680.1	"Ubiquitin-associated; PUG; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206511.1.S1_at	B	B1S	POPTR_0006s20050	POPTR_0006s20050 (7:83)	scaffold_6:19089157-19089323(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206511.1.S1_x_at	B	B1S	POPTR_0006s20050	POPTR_0006s20050 (5:146)	scaffold_6:19089094-19089373(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206512.1.S1_at	B	B1S	POPTR_0006s20040	POPTR_0006s20040 (6:599)	NA	NA	Q9C688	AP2/ERF and B3 domain-containing transcription factor At1g51120	AT1G51120.1	AP2/B3 transcription factor family protein 	LOC_Os01g49830.1	"B3 DNA binding domain containing protein, expressed"	Medtr1g147280.1	Pathogenesis-related transcriptional factor and ERF; Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.206518.1.S1_at	B	B1S	POPTR_0006s19940	POPTR_0006s19940 (5:1061)	scaffold_6:18967667-18971151(+) (9)	NA	Q9LVN1	Formin-like protein 13	AT2G25050.2	Actin-binding FH2 (Formin Homology) protein 	LOC_Os08g17820.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g145580.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206538.1.S1_at	B	B1S	POPTR_0006s19430	POPTR_0006s19430 (6:678)	scaffold_6:18474607-18475589(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206577.1.S1_at	B	B1S	POPTR_0006s22370	POPTR_0006s22370 (8:2308)	scaffold_6:21396637-21398963(+) (9)	NA	P54968	IAA-amino acid hydrolase ILR1	AT3G02875.1	Peptidase M20/M25/M40 family protein 	LOC_Os07g14590.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	NA	GO:0016787|hydrolase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.20658.2.S1_at	B	B1S	POPTR_0017s05660	POPTR_0017s05660 (0:401)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g111350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206609.1.S1_at	B	B1A	POPTR_0006s23190	POPTR_0006s23190 (3:440)	scaffold_6:22009785-22010382(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206628.1.S1_at	B	B1S	POPTR_0018s08340	POPTR_0018s08340 (0:424)	scaffold_6:22258818-22259277(-) (9)	NA	Q5N870	Endoribonuclease Dicer homolog 3a	AT3G43920.2	dicer-like 3 	LOC_Os10g34430.1	"Dicer, putative, expressed"	Medtr3g139020.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.206637.1.S1_at	B	B2S	POPTR_0006s23690	POPTR_0006s23690 (8:1585)//POPTR_0018s08380 (1:1524)	scaffold_6:22413151-22414732(-) (9)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT5G21930.2	P-type ATPase of Arabidopsis 2 	LOC_Os03g08070.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.1	"ATPase, E1-E2 type "	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.206640.1.S1_at	B	B2S	POPTR_0006s23790	POPTR_0009s16880 (0:970)//POPTR_0006s23790 (4:553)	NA	NA	Q5R4U2	UPF0712 protein C7orf64 homolog	AT2G27790.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g01480.1	"nucleic acid binding protein, putative, expressed"	Medtr5g085610.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206662.1.S1_at	B	B1S	POPTR_0006s24180	POPTR_0006s24180 (7:761)	NA	NA	Q9FKG6	U-box domain-containing protein 52	AT5G12000.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os02g12660.1	"protein kinase domain containing protein, putative, expressed"	Medtr3g139680.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.206677.1.S1_at	B	B1S	POPTR_0006s24460	POPTR_0006s24460 (8:332)	scaffold_6:23065489-23065825(+) (11)	NA	A4UVI1	Fatty acid desaturase 1	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	Medtr1g020170.1	Fatty acid desaturase/sphingolipid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.206680.1.S1_at	B	B1S	POPTR_0006s24540	POPTR_0006s24540 (5:416)	scaffold_6:23123294-23124101(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206694.1.S1_at	B	B1S	POPTR_0006s24760	POPTR_0006s24760 (7:655)	scaffold_6:23318561-23319588(-) (10)	NA	NA	NA	AT1G23550.1	similar to RCD one 2 	LOC_Os04g57640.2	"RCD1, putative, expressed"	Medtr4g136750.1	"PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206719.1.S1_at	B	B2S	POPTR_0006s25550	POPTR_0018s00300 (0:1552)//POPTR_0006s25550 (7:1243)	scaffold_6:23939051-23944578(+) (11)	NA	Q9NQT4	Exosome complex exonuclease RRP46	AT3G46210.6	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os03g63720.1	"exosome complex exonuclease, putative, expressed"	Medtr7g084770.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.206723.1.S1_at	B	B1S	POPTR_0006s25590	POPTR_0006s25590 (8:1157)	scaffold_6:23975618-23976880(+) (9)	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os08g28240.1	"carotenoid cleavage dioxygenase, putative"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206737.1.S1_at	B	B1S	POPTR_0006s25900	POPTR_0006s25900 (2:155)	scaffold_6:24237492-24243311(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206742.1.S1_at	B	B1A	POPTR_0006s25980	POPTR_0006s25980 (8:495)	NA	NA	O81004	GTP-binding protein At2g22870	AT5G11480.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g53150.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr3g132650.1	Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.206744.1.S1_at	B	B1S	POPTR_0006s26020	POPTR_0006s26020 (5:1050)	scaffold_6:24340191-24341788(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206745.1.S1_at	B	B1S	POPTR_0006s26030	POPTR_0006s26030 (7:1717)	NA	NA	NA	NA	AT4G32700.2	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding 	LOC_Os12g19370.1	"DNA polymerase I family protein, expressed"	Medtr1g009720.1	DNA-directed DNA polymerase; ATP-requiring DNA helicase RecQ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206777.1.S1_at	B	B1S	POPTR_0006s26710	POPTR_0006s26710 (8:553)	NA	NA	A2AR02	Peptidyl-prolyl cis-trans isomerase G	AT4G32420.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr1g013450.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.206799.1.S1_at	B	B1S	POPTR_0006s27140	POPTR_0006s27140 (6:1376)	scaffold_6:25142365-25144329(-) (9)	NA	NA	NA	AT4G35530.1	phosphatidylinositolglycan-related 	LOC_Os05g07260.2	"phosphatidylinositolglycan-related, putative, expressed"	Medtr7g005890.1	phosphatidylinositolglycan-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206823.1.S1_at	B	B1S	POPTR_0006s27720	POPTR_0006s27720 (8:428)	NA	NA	NA	NA	AT5G11000.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr3g138030.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206823.1.S1_x_at	B	B1S	POPTR_0006s27720	POPTR_0006s27720 (8:350)	NA	NA	NA	NA	AT5G11000.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr3g138030.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206836.1.S1_at	B	B2S	POPTR_0006s27960	POPTR_0018s02490 (0:553)//POPTR_0006s27960 (8:546)	scaffold_6:25830952-25831620(-) (9)	NA	Q9SK28	Formin-like protein 18	AT2G25050.1	Actin-binding FH2 (Formin Homology) protein 	LOC_Os08g17820.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g016730.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206854.1.S1_at	B	B7S	POPTR_0006s28400	POPTR_0006s28490 (0:444)//POPTR_0006s28400 (2:440)//POPTR_0006s28420 (2:440)//POPTR_0006s28520 (0:440)//POPTR_0006s28470 (0:440)//POPTR_0157s00210 (0:440)//POPTR_0006s28440 (0:440)	NA	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g26000.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.206879.1.S1_at	B	B1S	POPTR_0007s00460	POPTR_0007s00460 (6:1542)	scaffold_7:172004-173838(-) (10)	NA	O80568	Inositol-tetrakisphosphate 1-kinase 4	AT2G43980.1	"inositol 1,3,4-trisphosphate 5/6-kinase 4 "	LOC_Os09g34300.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206908.1.S1_at	B	B1S	POPTR_1117s00210	POPTR_1117s00210 (8:780)	NA	NA	Q8QZR1	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.206933.1.S1_at	B	B1S	POPTR_0007s01600	POPTR_0007s01600 (7:411)	scaffold_7:911922-912435(+) (11)	NA	NA	NA	AT5G67550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71110.1); Has 161 Blast hits to 154 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g16310.1	expressed protein	Medtr5g015520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206938.1.S1_s_at	B	B1S	POPTR_0007s01690	POPTR_0007s01690 (1:402)	NA	NA	O04153	Calreticulin-3	AT1G08450.1	calreticulin 3 	LOC_Os05g43170.1	"calreticulin precursor protein, putative, expressed"	Medtr7g089980.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
PtpAffx.206954.1.S1_at	B	B2S	POPTR_0007s01910	POPTR_0017s05820 (0:769)//POPTR_0007s01910 (7:266)	scaffold_7:1094133-1094881(-) (10)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT2G43280.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g15040.1	"FAR1 family protein, expressed"	Medtr7g046760.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206955.1.S1_at	B	B2S	POPTR_0007s01920	POPTR_0007s01930 (5:1819)//POPTR_0007s01920 (6:1437)	scaffold_7:1097064-1101987(+) (11)	NA	NA	NA	AT2G43280.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g50900.1	"transposon protein, putative, unclassified, expressed"	Medtr7g046760.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20696.1.S1_at	B	B1S	POPTR_0012s12790	POPTR_0012s12790 (8:508)	NA	NA	NA	NA	AT5G36970.1	NDR1/HIN1-like 25 	LOC_Os04g58090.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g084030.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.206971.1.S1_x_at	B	B4S	POPTR_0007s02270	POPTR_0007s02290 (2:2090)//POPTR_0007s02220 (4:2073)//POPTR_0007s02250 (1:1927)//POPTR_0007s02270 (6:260)	scaffold_7:1321166-1351242(-) (9)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G70250.1	"receptor serine/threonine kinase, putative "	LOC_Os01g02600.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr4g098520.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206986.1.S1_at	B	B1S	POPTR_0007s02550	POPTR_0007s02550 (7:234)	scaffold_7:1505082-1505433(-) (11)	NA	NA	NA	AT2G32350.1	Ubiquitin-like superfamily protein 	NA	NA	Medtr2g103710.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206989.1.S1_at	B	B1S	POPTR_0007s02670	POPTR_0007s02670 (6:98)	scaffold_7:1563553-1563729(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207009.1.S1_x_at	B	B2S	POPTR_0007s03060	POPTR_0007s03060 (6:231)//POPTR_0007s00850 (2:230)	NA	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g092500.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207032.1.S1_at	B	B2S	POPTR_0002s22130	POPTR_0002s22130 (0:296)//POPTR_0280s00200 (0:20)	scaffold_280:2758-2949(-) (11)	NA	O81263	Thymidine kinase	AT3G07800.1	Thymidine kinase 	LOC_Os03g02200.2	"thymidine kinase, putative, expressed"	Medtr3g106020.1	Thymidine kinase 	NA	GO:0004797|thymidine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207043.1.S1_at	B	B1S	POPTR_0007s03930	POPTR_0007s03930 (8:1173)	scaffold_7:2338838-2340011(+) (9)	NA	Q9D0N7	Chromatin assembly factor 1 subunit B	AT5G64630.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g01680.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g142620.1	"FAS2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207103.1.S1_at	B	B1S	POPTR_0007s05300	POPTR_0007s05300 (0:224)	NA	NA	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os02g18320.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr3g101870.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207103.1.S1_x_at	B	B1S	POPTR_0007s05300	POPTR_0007s05300 (0:224)	NA	NA	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os02g18320.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr3g101870.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.207111.1.S1_at	B	B1S	POPTR_0007s05460	POPTR_0007s05460 (8:466)	NA	NA	Q6YC49	UDP-N-acetylglucosamine transporter	AT5G65000.1	Nucleotide-sugar transporter family protein 	LOC_Os02g36390.4	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr5g106860.1	Nucleotide-sugar transporter 	NA	NA	GO:0016020|membrane
PtpAffx.207136.1.S1_at	B	B2S	POPTR_0007s06250	POPTR_0007s06290 (1:1526)//POPTR_0007s06250 (1:1156)	NA	NA	O00410	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207149.1.S1_at	B	B1S	POPTR_0007s06540	POPTR_0007s06540 (7:178)	scaffold_7:4923228-4923469(+) (11)	NA	NA	NA	AT2G21970.1	stress enhanced protein 2 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207153.1.S1_x_at	B	B2S	POPTR_0006s17780	POPTR_0007s06560 (8:730)//POPTR_0006s17780 (8:712)	scaffold_7:4964763-4965485(+) (9)	NA	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207162.1.S1_at	B	B1S	POPTR_0007s06810	POPTR_0007s06810 (8:433)	scaffold_7:5165713-5166280(+) (11)	NA	NA	NA	AT2G21860.1	violaxanthin de-epoxidase-related 	LOC_Os01g51860.1	"violaxanthin de-epoxidase, putative, expressed"	Medtr4g141060.1	Violaxanthin de-epoxidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207181.1.S1_at	B	B1S	POPTR_0007s07270	POPTR_0007s07270 (0:10)	scaffold_7:5581529-5581878(+) (11)	NA	Q9LPL4	F-box protein SKP2A	AT5G23340.1	RNI-like superfamily protein 	LOC_Os11g16280.1	"F-box domain containing protein, expressed"	Medtr8g120510.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207188.1.S1_at	B	B1S	POPTR_0007s07490	POPTR_0007s07490 (5:302)	scaffold_7:5861622-5862421(+) (11)	NA	NA	NA	NA	NA	LOC_Os11g32660.1	"transposon protein, putative, unclassified"	Medtr5g035290.1	Plant MuDR transposase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2072.2.A1_at	B	B1S	POPTR_0001s27120	POPTR_0001s27120 (8:505)	NA	NA	P30182	DNA topoisomerase 2	AT3G23890.2	topoisomerase II 	LOC_Os02g47150.1	"DNA topoisomerase 2, putative, expressed"	Medtr3g030000.1	DNA gyrase B; ; ; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0005524|ATP binding	GO:0005694|chromosome
PtpAffx.207205.1.S1_at	B	B2S	POPTR_0007s07920	POPTR_0005s09630 (1:500)//POPTR_0007s07920 (4:485)	NA	NA	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT3G19740.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g12160.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g101160.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.207261.1.S1_at	B	B1S	POPTR_0007s10850	POPTR_0007s10850 (7:1324)	scaffold_7:11019756-11021125(-) (10)	NA	Q9FH99	F-box protein At5g67140	AT5G67140.1	F-box/RNI-like superfamily protein 	LOC_Os06g07000.2	"OsFBL28 - F-box domain and LRR containing protein, expressed"	Medtr5g016800.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207266.1.S1_at	B	B1S	POPTR_0007s10920	POPTR_0007s10920 (8:418)	scaffold_7:11120441-11122670(-) (11)	NA	O22042	Mitogen-activated protein kinase kinase kinase 3	AT5G67080.1	mitogen-activated protein kinase kinase kinase 19 	LOC_Os04g47240.3	"STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017070.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207288.1.S1_at	B	B1S	POPTR_0003s02865	POPTR_0003s02865 (0:284)	scaffold_7:11884272-11884577(-) (11)	NA	Q6XKE6	Genome polyprotein	NA	NA	LOC_Os06g18164.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207288.1.S1_x_at	B	B1S	POPTR_0003s02865	POPTR_0003s02865 (0:294)	scaffold_7:11884258-11884577(-) (11)	NA	Q6XKE6	Genome polyprotein	NA	NA	LOC_Os06g18164.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207298.1.S1_at	B	B3S	POPTR_0007s11670	POPTR_0007s11670 (5:631)//POPTR_0007s11710 (3:531)//POPTR_0007s11690 (0:476)	scaffold_7:12051255-12052146(-) (9)	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23560.1	methyl esterase 7 	LOC_Os01g57770.1	"OsPOP4 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g018420.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20731.1.A1_at	B	B1S	POPTR_0016s10120	POPTR_0016s10120 (7:762)	NA	NA	P32110	Probable glutathione S-transferase	AT3G09270.1	glutathione S-transferase TAU 8 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr7g071360.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207310.1.S1_at	B	B1S	POPTR_0007s11890	POPTR_0007s11890 (7:1856)	NA	NA	O23076	Putative B3 domain-containing protein REM15	AT4G00260.1	Transcriptional factor B3 family protein 	NA	NA	Medtr1g025410.1	"HMG-I and HMG-Y, DNA-binding; Transcriptional factor B3 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.207390.1.S1_at	B	B1S	POPTR_0007s13570	POPTR_0007s13570 (6:261)	NA	NA	Q9SDZ9	Purple acid phosphatase 2	AT2G16430.2	purple acid phosphatase 10 	LOC_Os01g56880.1	"purple acid phosphatase precursor, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207416.1.S1_at	B	B2S	POPTR_0007s14160	POPTR_0007s14160 (8:630)//POPTR_0007s14140 (2:628)	NA	NA	NA	NA	AT2G22600.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr5g033090.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.207441.1.S1_at	B	B2S	POPTR_0007s14880	POPTR_0007s14890 (0:719)//POPTR_0007s14880 (8:593)	NA	NA	NA	NA	AT5G67610.1	Uncharacterized conserved protein (DUF2215) 	LOC_Os03g31570.1	"proline-rich family protein, putative, expressed"	Medtr5g015430.1	"protein F1K23.6 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207477.1.S1_at	B	B1S	POPTR_0008s00430	POPTR_0008s00430 (0:98)	scaffold_8:161355-161453(+) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g26070.1	"pentatricopeptide, putative, expressed"	Medtr5g020540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207483.1.S1_at	B	B1S	POPTR_0008s00550	POPTR_0008s00550 (8:555)	scaffold_8:227717-228366(+) (10)	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.207506.1.S1_s_at	B	B2S	POPTR_0008s01210	POPTR_0010s25360 (8:847)//POPTR_0008s01210 (8:838)	NA	NA	A0AAR7	Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase	AT3G10660.1	calmodulin-domain protein kinase cdpk isoform 2 	LOC_Os05g41090.1	"CAMK_CAMK_like_CG18020d.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g047760.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207511.1.S1_at	B	B1S	POPTR_0008s01300	POPTR_0008s01300 (5:319)	scaffold_8:632417-632871(+) (11)	NA	Q9FF81	Vacuolar protein sorting-associated protein 36	AT5G04920.1	EAP30/Vps36 family protein 	NA	NA	Medtr8g047910.1	Vacuolar protein sorting 36 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207527.1.S1_at	B	B2S	POPTR_0008s01550	POPTR_0008s01550 (7:193)//POPTR_0008s01610 (0:15)	NA	NA	NA	NA	AT5G22040.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os03g16730.1	expressed protein	Medtr1g112100.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207583.1.S1_at	B	B2S	POPTR_0008s02660	POPTR_0008s02670 (6:1505)//POPTR_0008s02660 (6:203)	scaffold_8:1351435-1353030(-) (10)	NA	NA	NA	AT2G28600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	NA	NA	Medtr1g068500.1	"Putative ATP-dependent RNA helicase, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207605.1.S1_at	B	B1S	POPTR_0008s03330	POPTR_0008s03330 (6:716)	scaffold_8:1771346-1772170(+) (11)	NA	Q94ID2	"Adenylate isopentenyltransferase 5, chloroplastic"	AT5G19040.1	isopentenyltransferase 5 	LOC_Os03g59570.1	"IPP transferase, putative, expressed"	Medtr1g140830.1	Isopentenyl transferase-like 	GO:0044260|cellular macromolecule metabolic process||GO:0008033|tRNA processing||GO:0006508|proteolysis||GO:0019538|protein metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0008234|cysteine-type peptidase activity||GO:0005524|ATP binding	NA
PtpAffx.207660.1.S1_x_at	B	B1S	POPTR_0008s04510	POPTR_0008s04510 (8:1423)	scaffold_8:2564306-2565729(-) (9)	NA	Q9HAU5	Regulator of nonsense transcripts 2	AT2G39260.1	binding;RNA binding 	LOC_Os02g42040.1	"MIF4G domain containing protein, putative, expressed"	Medtr2g055900.1	"Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.207685.1.S1_at	B	B1S	POPTR_0008s05040	POPTR_0008s05040 (7:49)	NA	NA	NA	NA	AT5G53580.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g37330.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207698.1.S1_at	B	B1S	POPTR_0008s05260	POPTR_0008s05260 (4:226)	scaffold_8:3042418-3042970(-) (11)	NA	NA	NA	AT2G39580.1	CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os12g37890.1	expressed protein	Medtr7g025350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207708.1.S1_at	B	B2S	POPTR_0008s05630	POPTR_0008s05630 (8:2166)//POPTR_0010s21110 (0:2024)	NA	NA	Q9C7A8	DNA replication complex GINS protein PSF2	AT3G12530.1	PSF2 	LOC_Os01g14610.2	"PSF2 - Putative GINS complex subunit, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207710.1.S1_at	B	B6S	POPTR_0008s05730	POPTR_0010s09035 (0:253)//POPTR_0436s00220 (0:215)//POPTR_0008s22040 (0:215)//POPTR_0008s05730 (4:214)//POPTR_0012s06270 (0:207)//POPTR_0007s05610 (2:203)	NA	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.207710.1.S1_x_at	B	B6S	POPTR_0008s05730	POPTR_0010s09035 (0:266)//POPTR_0008s05730 (6:227)//POPTR_0436s00220 (0:219)//POPTR_0008s22040 (0:219)//POPTR_0007s05610 (3:219)//POPTR_0012s06270 (0:207)	NA	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.207712.1.S1_at	B	B1S	POPTR_0008s05750	POPTR_0008s05750 (3:402)	scaffold_8:3342724-3343250(+) (11)	NA	O80933	Scarecrow-like protein 9	AT2G37650.1	GRAS family transcription factor 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207726.1.S1_at	B	B1S	POPTR_0008s06060	POPTR_0008s06060 (8:1647)	scaffold_8:3575654-3577482(-) (9)	NA	O04015	Delta-1-pyrroline-5-carboxylate synthase	AT3G55610.1	delta 1-pyrroline-5-carboxylate synthase 2 	LOC_Os05g38150.2	"amino acid kinase, putative, expressed"	Medtr3g092110.1	Gamma-glutamyl phosphate reductase GPR; Glutamate 5-kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.20773.1.A1_at	B	B1S	POPTR_0002s15390	POPTR_0002s15390 (0:248)	NA	NA	Q16MG9	ATPase ASNA1 homolog	AT1G01910.4	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g34970.1	"arsenical pump-driving ATPase, putative, expressed"	Medtr1g120500.1	Anion-transporting ATPase 	GO:0006875|cellular metal ion homeostasis	GO:0005524|ATP binding	NA
PtpAffx.207780.1.S1_x_at	B	B1S	POPTR_0008s07270	POPTR_0008s07270 (7:404)	NA	NA	Q8H1T3	"Ferritin-2, chloroplastic"	AT3G11050.1	ferritin 2 	LOC_Os12g01530.2	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr5g090670.1	Rubrerythrin; Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
PtpAffx.207782.1.S1_at	B	B1S	POPTR_0008s07300	POPTR_0008s07300 (4:2356)	scaffold_8:4459610-4463207(-) (9)	NA	Q8BX80	Cytosolic endo-beta-N-acetylglucosaminidase	AT3G11040.1	Glycosyl hydrolase family 85  	LOC_Os05g27960.1	"hydrolase, acting on glycosyl bonds, putative, expressed"	Medtr3g094820.1	"Glycoside hydrolase, family 85 "	NA	GO:0033925|mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	GO:0005737|cytoplasm
PtpAffx.207796.1.S1_at	B	B1S	POPTR_0008s07590	POPTR_0008s07590 (5:109)	scaffold_8:4648689-4648965(+) (11)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.207832.1.S1_at	B	B1S	POPTR_0008s08170	POPTR_0008s08170 (6:1434)	NA	NA	NA	NA	AT1G54310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g07740.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207842.1.S1_at	B	B1S	POPTR_0008s08390	POPTR_0008s08390 (8:185)	NA	NA	Q652P9	Germin-like protein 9-3	AT1G02335.1	germin-like protein subfamily 2 member 2 precursor 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107640.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.207870.1.S1_at	B	B1S	POPTR_0008s08970	POPTR_0008s08970 (8:308)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207870.1.S1_x_at	B	B1S	POPTR_0008s08970	POPTR_0008s08970 (8:308)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207873.1.S1_x_at	B	B1S	POPTR_0008s09020	POPTR_0008s09020 (2:1916)	scaffold_8:5595190-5597226(+) (10)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G26690.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.207881.1.S1_at	B	B1S	POPTR_0008s09240	POPTR_0008s09240 (3:401)	scaffold_8:5731169-5731824(+) (10)	NA	Q9ZQ74	"Pentatricopeptide repeat-containing protein At2g03380, mitochondrial"	AT2G03380.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g08650.1	"pentatricopeptide, putative, expressed"	Medtr4g115870.1	WD-40 repeat; Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207891.1.S1_at	B	B1S	POPTR_0008s09440	POPTR_0008s09440 (1:382)	scaffold_8:5849972-5851242(+) (11)	NA	Q3EC77	Probable methyltransferase PMT5	AT2G03480.1	QUASIMODO2 LIKE 2 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr4g115600.1	"dehydration-responsive protein-related, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.207932.1.S1_at	B	B1S	POPTR_0008s10190	POPTR_0008s10190 (8:698)	scaffold_8:6383337-6385507(-) (9)	NA	Q96PB1	CAS1 domain-containing protein 1	AT3G06550.3	O-acetyltransferase family protein 	LOC_Os03g19970.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207937.1.S1_at	B	B1S	POPTR_0008s10360	POPTR_0008s10360 (7:518)	scaffold_8:6489634-6490196(-) (11)	NA	NA	NA	AT5G49480.1	Ca2+-binding protein 1 	LOC_Os03g19720.1	"EF hand family protein, putative, expressed"	Medtr8g137350.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207945.1.S1_at	B	B2S	POPTR_0008s10500	POPTR_0008s10500 (8:613)//POPTR_0010s15570 (0:468)	scaffold_8:6584745-6586780(+) (9)	NA	Q9SR05	Receptor-like protein kinase ANXUR1	AT3G04690.1	Malectin/receptor-like protein kinase family protein 	LOC_Os05g20150.1	"TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.207972.1.S1_at	B	B1S	POPTR_0008s11150	POPTR_0008s11150 (6:663)	NA	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G13635.2	DNA glycosylase superfamily protein 	LOC_Os08g38170.1	"methyladenine glycosylase, putative, expressed"	Medtr8g077310.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.207972.1.S1_x_at	B	B1S	POPTR_0008s11150	POPTR_0008s11150 (7:862)	NA	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G13635.2	DNA glycosylase superfamily protein 	LOC_Os08g38170.1	"methyladenine glycosylase, putative, expressed"	Medtr8g077310.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.207988.1.S1_at	B	B1S	POPTR_0008s11380	POPTR_0008s11380 (7:463)	NA	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT1G13220.2	nuclear matrix constituent protein-related 	LOC_Os02g48010.1	"nuclear matrix constituent protein 1-like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207998.1.S1_at	B	B1S	POPTR_0008s11580	POPTR_0008s11580 (7:1399)	scaffold_8:7376871-7379272(+) (11)	NA	C0LGL4	Probable LRR receptor-like serine/threonine-protein kinase At2g28960	AT1G25570.1	Di-glucose binding protein with Leucine-rich repeat domain 	LOC_Os01g04720.1	"leucine-rich repeat protein-related, putative, expressed"	Medtr5g069200.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208004.1.S1_at	B	B1S	POPTR_0008s11690	POPTR_0008s11690 (8:432)	scaffold_8:7469275-7469835(+) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT1G25510.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g04710.1	"aspartic proteinase, putative, expressed"	AC233660_26.1	"Peptidase aspartic, active site AC233660.2 100903-97400 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208014.1.S1_at	B	B2S	POPTR_0010s13400	POPTR_0010s13400 (7:639)//POPTR_0008s12010 (1:522)	scaffold_8:7745796-7746410(+) (10)	NA	NA	NA	AT1G68480.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g03840.1	"ZOS1-02 - C2H2 zinc finger protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208014.1.S1_x_at	B	B2S	POPTR_0010s13400	POPTR_0010s13400 (7:696)//POPTR_0008s12010 (5:559)	scaffold_8:7745789-7746447(+) (10)	NA	NA	NA	AT1G68480.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g03840.1	"ZOS1-02 - C2H2 zinc finger protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208019.1.S1_at	B	B1S	POPTR_0008s12120	POPTR_0008s12120 (2:83)	scaffold_8:7814226-7815298(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20806.1.S1_at	B	B1S	POPTR_0003s06870	POPTR_0003s06870 (8:541)	NA	NA	Q9SYG1	17.4 kDa class III heat shock protein	AT1G54050.1	HSP20-like chaperones superfamily protein 	LOC_Os02g54140.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr8g026190.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208066.1.S1_at	B	B1S	POPTR_0008s13170	POPTR_0008s13170 (5:97)	NA	NA	Q00423	HMG-Y-related protein A	AT1G14900.1	high mobility group A 	LOC_Os08g33190.1	"linker histone H1 and H5 family protein, expressed"	Medtr5g086060.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.208081.1.S1_at	B	B1S	POPTR_0008s13510	POPTR_0008s13510 (8:31)	NA	NA	P49420	Aspartate-semialdehyde dehydrogenase	AT1G14810.1	semialdehyde dehydrogenase family protein 	LOC_Os03g55280.1	"semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed"	Medtr4g156590.1	"Aspartate-semialdehyde dehydrogenase, microbial "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016620|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0046983|protein dimerization activity"	GO:0005737|cytoplasm
PtpAffx.208102.1.S1_at	B	B1S	POPTR_0008s14000	POPTR_0008s14000 (6:636)	scaffold_8:9241866-9243048(-) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT2G01970.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.208107.1.S1_at	B	B1S	POPTR_0008s14140	POPTR_0008s14140 (0:14)	scaffold_8:9341602-9341756(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G14600.1	Homeodomain-like superfamily protein 	LOC_Os03g03760.1	"MYB family transcription factor, putative, expressed"	Medtr1g039660.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208107.1.S1_x_at	B	B1S	POPTR_0008s14140	POPTR_0008s14140 (2:103)	scaffold_8:9341602-9341845(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G14600.1	Homeodomain-like superfamily protein 	LOC_Os03g03760.1	"MYB family transcription factor, putative, expressed"	Medtr1g039660.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208108.1.S1_at	B	B1S	POPTR_0008s14140	POPTR_0008s14140 (4:412)	scaffold_8:9342816-9343498(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G14600.1	Homeodomain-like superfamily protein 	LOC_Os03g03760.1	"MYB family transcription factor, putative, expressed"	Medtr1g039660.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208113.1.S1_x_at	B	B1A	POPTR_0001s12730	POPTR_0001s12730 (5:89)	scaffold_8:9443459-9443510(-) (10)	NA	Q9FTZ2	"Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase"	AT1G20050.1	"C-8,7 sterol isomerase "	LOC_Os01g01369.1	"3-beta-hydroxysteroid-Delta-isomerase, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0016125|sterol metabolic process||GO:0006629|lipid metabolic process	GO:0047750|cholestenol delta-isomerase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.208152.1.S1_at	B	B2S	POPTR_0008s15200	POPTR_0008s15200 (8:3019)//POPTR_0010s09810 (4:3017)	NA	NA	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208170.1.S1_at	B	B2S	POPTR_0008s15830	POPTR_0010s09170 (0:1579)//POPTR_0008s15830 (6:1497)	NA	NA	Q96449	Meiotic recombination protein DMC1 homolog	AT3G22880.1	DNA repair (Rad51) family protein 	LOC_Os11g04954.1	"DNA repair protein Rad51, putative, expressed"	Medtr8g133290.1	"AAA ATPase; Rad51, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208170.1.S1_x_at	B	B2S	POPTR_0008s15830	POPTR_0010s09170 (1:1579)//POPTR_0008s15830 (8:1497)	NA	NA	Q96449	Meiotic recombination protein DMC1 homolog	AT3G22880.1	DNA repair (Rad51) family protein 	LOC_Os11g04954.1	"DNA repair protein Rad51, putative, expressed"	Medtr8g133290.1	"AAA ATPase; Rad51, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208195.1.S1_at	B	B1S	POPTR_0008s16650	POPTR_0008s16650 (4:221)	scaffold_8:11190448-11191456(-) (11)	NA	Q96524	Cryptochrome-2	AT1G04400.1	cryptochrome 2 	LOC_Os02g41550.3	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr1g042700.1	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.208255.1.S1_at	B	B4S	POPTR_0008s18020	POPTR_0010s06440 (0:4132)//POPTR_0008s18050 (5:1072)//POPTR_0008s18030 (0:306)//POPTR_0008s18020 (6:255)	scaffold_8:12096284-12104052(+) (11)	NA	Q9LU89	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os04g40860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.208255.1.S1_x_at	B	B4S	POPTR_0008s18020	POPTR_0010s06440 (2:4132)//POPTR_0008s18050 (4:1072)//POPTR_0008s18030 (0:306)//POPTR_0008s18020 (7:255)	scaffold_8:12096284-12104052(+) (11)	NA	Q9LU89	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os04g40860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.208276.1.S1_at	B	B1S	POPTR_0017s09350	POPTR_0017s09350 (3:546)	scaffold_8:12838634-12839182(+) (10)	NA	NA	NA	NA	NA	LOC_Os07g13350.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208296.1.S1_at	B	B1A	POPTR_0008s19200	POPTR_0008s19200 (1:55)	scaffold_8:13152043-13152787(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208317.1.S1_at	B	B1S	POPTR_0008s19710	POPTR_0008s19710 (7:1987)	scaffold_8:13594680-13596709(+) (9)	NA	NA	NA	AT1G70100.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3305 Blast hits to 2533 proteins in 359 species: Archae - 8; Bacteria - 641; Metazoa - 1288; Fungi - 248; Plants - 240; Viruses - 42; Other Eukaryotes - 838 (source: NCBI BLink). 	LOC_Os12g17530.1	expressed protein	Medtr5g037670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208330.1.S1_at	B	B1S	POPTR_0008s19970	POPTR_0008s19970 (3:282)	NA	NA	Q8VY21	Tubby-like F-box protein 3	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208340.1.S1_at	B	B2S	POPTR_0008s20060	POPTR_0008s20060 (7:1309)//POPTR_1875s00200 (7:1240)	NA	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.208342.1.S1_at	B	B2S	POPTR_0008s20060	POPTR_0010s02070 (0:1082)//POPTR_0008s20060 (8:703)	scaffold_8:13870856-13871559(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.208345.1.S1_at	B	B1S	POPTR_0008s20240	POPTR_0008s20240 (4:544)	NA	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G18910.1	Protein kinase superfamily protein 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr1g098870.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208353.1.S1_at	B	B1S	POPTR_0008s20390	POPTR_0008s20390 (1:114)	scaffold_8:14181909-14183676(+) (9)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208362.1.S1_s_at	B	B1S	POPTR_0010s03950	POPTR_0010s03950 (8:310)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.208378.1.S1_at	B	B2S	POPTR_0008s21030	POPTR_0008s21030 (4:1074)//POPTR_0010s02180 (0:393)	NA	NA	Q8RWY3	Putative chromatin-remodeling complex ATPase chain	AT3G06400.2	chromatin-remodeling protein 11 	LOC_Os01g27040.1	"chromatin-remodeling complex ATPase chain, putative, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	GO:0043044|ATP-dependent chromatin remodeling	GO:0031491|nucleosome binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0016585|chromatin remodeling complex
PtpAffx.208378.1.S1_x_at	B	B2S	POPTR_0008s21030	POPTR_0008s21030 (6:1709)//POPTR_0010s02180 (0:1061)	scaffold_8:15092399-15094985(+) (9)	NA	Q8RWY3	Putative chromatin-remodeling complex ATPase chain	AT3G06400.2	chromatin-remodeling protein 11 	LOC_Os01g27040.1	"chromatin-remodeling complex ATPase chain, putative, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	GO:0043044|ATP-dependent chromatin remodeling	GO:0031491|nucleosome binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0016585|chromatin remodeling complex
PtpAffx.208398.1.S1_at	B	B1S	POPTR_0010s04580	POPTR_0010s04580 (5:167)	NA	NA	Q39264	Zinc finger protein 5	AT1G10480.1	zinc finger protein 5 	LOC_Os01g32920.1	"ZOS1-08 - C2H2 zinc finger protein, expressed"	Medtr5g036910.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.208417.1.S1_at	B	B1S	POPTR_0018s07585	POPTR_0018s07585 (6:248)	NA	NA	NA	NA	NA	NA	LOC_Os02g28400.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208438.1.S1_at	B	B1S	POPTR_0010s00660	POPTR_0010s00660 (7:114)	scaffold_10:363541-363710(+) (11)	NA	NA	NA	AT1G48330.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g18450.1	expressed protein	Medtr2g052370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208442.1.S1_at	B	B1A	POPTR_0018s11690	POPTR_0018s11690 (6:135)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208456.1.S1_at	B	B1S	POPTR_0010s01470	POPTR_0010s01470 (0:863)	scaffold_10:668320-672068(-) (9)	NA	P49062	Exopolygalacturonase clone GBGE184	AT1G02790.1	polygalacturonase 4 	LOC_Os06g31270.1	"polygalacturonase, putative"	Medtr1g108030.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.208474.1.S1_at	B	B2S	POPTR_0010s01530	POPTR_0016s09910 (0:0)//POPTR_0010s01530 (0:0)	scaffold_10:1711829-1711867(+) (11)//scaffold_16:7994384-7994422(-) (11)	NA	NA	NA	AT2G35040.2	AICARFT/IMPCHase bienzyme family protein 	LOC_Os08g10570.2	"bifunctional purine biosynthesis protein purH, putative, expressed"	Medtr5g103430.1	AICARFT/IMPCHase bienzyme; MGS-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208481.1.S1_at	B	B1S	POPTR_1325s00010	POPTR_1325s00010 (4:1607)	scaffold_10:1914046-1914819(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208489.1.S1_x_at	B	B1S	POPTR_0001s24230	POPTR_0001s24230 (0:417)	scaffold_10:1993700-1994218(+) (11)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os02g37790.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.208490.1.S1_at	B	B1S	POPTR_0008s22130	POPTR_0008s22130 (0:473)	NA	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.208501.1.S1_at	B	B1S	POPTR_0010s03280	POPTR_0010s03280 (6:539)	scaffold_10:4028858-4030770(-) (9)	NA	B9DHD7	Vesicle-associated protein 2-2	AT1G08820.2	vamp/synaptobrevin-associated protein 27-2 	LOC_Os01g71050.1	"MSP domain containing protein, putative, expressed"	Medtr8g139690.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.208512.1.S1_x_at	B	B3S	POPTR_0003s16760	POPTR_0003s16760 (6:595)//POPTR_0015s15880 (6:559)//POPTR_0001s13620 (1:521)	scaffold_10:3809538-3810133(-) (9)	NA	NA	NA	AT1G24265.2	Protein of unknown function (DUF1664) 	LOC_Os01g01070.2	expressed protein	Medtr7g022170.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208518.1.S1_at	B	B1S	POPTR_0010s03080	POPTR_0010s03080 (1:467)	NA	NA	P49730	Ribonucleoside-diphosphate reductase small chain	AT3G27060.1	Ferritin/ribonucleotide reductase-like family protein 	LOC_Os06g03720.1	"ribonucleoside-diphosphate reductase small chain, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208519.1.S1_at	B	B1S	POPTR_0010s03070	POPTR_0010s03070 (6:328)	NA	NA	Q8W4J2	Mitogen-activated protein kinase 16	AT5G19010.1	mitogen-activated protein kinase 16 	LOC_Os05g05160.1	"CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g026470.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208539.1.S1_at	B	B1S	POPTR_0010s02620	POPTR_0010s02620 (5:155)	NA	NA	O22775	Putative glycosyltransferase 2	AT4G02500.1	UDP-xylosyltransferase 2 	LOC_Os03g18820.2	"glycosyltransferase, putative, expressed"	Medtr7g130450.1	Galactosyl transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208555.1.S1_at	B	B1A	POPTR_0010s02350	POPTR_0010s02350 (0:1)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208564.1.S1_at	B	B1S	POPTR_0010s02120	POPTR_0010s02120 (5:1090)	scaffold_10:2451717-2455810(-) (11)	NA	NA	NA	AT4G39160.1	Homeodomain-like superfamily protein 	LOC_Os03g62379.1	"MYB family transcription factor, putative, expressed"	Medtr4g140870.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208582.1.S1_at	B	B1S	POPTR_0010s07760	POPTR_0010s07760 (3:239)	scaffold_10:8725792-8726414(+) (9)	NA	NA	NA	AT2G33390.1	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g065400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208593.1.S1_at	B	B1S	POPTR_0010s07520	POPTR_0010s07520 (3:1025)	scaffold_10:8551450-8552818(-) (11)	NA	Q8DGC4	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	AT1G48520.1	GLU-ADT subunit B 	LOC_Os11g34210.2	"aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed"	Medtr5g067700.1	"GatB, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.2086.1.A1_at	B	B1S	POPTR_0014s16240	POPTR_0014s16240 (6:46)	NA	NA	A4K526	UPF0451 protein C17orf61 homolog	AT2G04900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF423 (InterPro:IPR006696); Has 1824 Blast hits to 1824 proteins in 878 species: Archae - 0; Bacteria - 1498; Metazoa - 118; Fungi - 14; Plants - 58; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). 	LOC_Os03g53980.2	expressed protein	Medtr5g092880.1	Protein of unknown function DUF423 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208607.1.S1_at	B	B1S	POPTR_0010s07230	POPTR_0010s07230 (8:54)	NA	NA	NA	NA	AT3G23980.1	BLISTER 	LOC_Os01g68380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208647.1.S1_at	B	B1S	POPTR_0010s06120	POPTR_0010s06120 (8:1974)	scaffold_10:7550850-7552936(+) (10)	NA	NA	NA	AT1G13160.1	ARM repeat superfamily protein 	LOC_Os04g53770.1	"SDA1, putative, expressed"	Medtr3g102700.1	"SDA1; Protein of unknown function, nucleolar NUC1303, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208660.1.S1_at	B	B1S	POPTR_0010s05880	POPTR_0010s05880 (4:283)	scaffold_10:7330367-7330715(+) (11)	NA	Q9SAD9	"Pentatricopeptide repeat-containing protein At1g13040, mitochondrial"	AT1G13040.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g48850.2	"PPR repeat containing protein, expressed"	Medtr8g112280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208662.1.S1_at	B	B1S	POPTR_0010s05850	POPTR_0010s05850 (7:1418)	NA	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G26370.1	O-fucosyltransferase family protein 	LOC_Os02g06400.1	"growth regulator related protein, putative, expressed"	Medtr3g102440.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208686.1.S1_at	B	B1S	POPTR_0010s05380	POPTR_0010s05380 (8:427)	scaffold_10:6826688-6827159(-) (9)	NA	Q9CAL2	Cysteine-rich receptor-like protein kinase 3	AT1G70530.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 3 	LOC_Os01g36790.1	"TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g035020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.20869.1.A1_at	B	B1S	POPTR_0009s07060	POPTR_0009s07060 (5:419)	NA	NA	Q9FI39	Cytochrome P450 705A5	AT3G20950.1	"cytochrome P450, family 705, subfamily A, polypeptide 32 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g111290.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.208697.1.S1_at	B	B1S	POPTR_0010s04970	POPTR_0010s04970 (8:1460)	NA	NA	Q2PS26	Ubiquitin-like-specific protease 1D	AT1G60220.1	UB-like protease 1D 	LOC_Os06g29310.2	"ulp1 protease family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208702.1.S1_at	B	B1S	POPTR_0010s04930	POPTR_0010s04930 (7:168)	scaffold_10:6177456-6177686(+) (10)	NA	NA	NA	AT1G59650.1	Protein of unknown function (DUF1336) 	LOC_Os03g48660.1	"DUF1336 domain containing protein, expressed"	Medtr5g038290.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208706.1.S1_s_at	B	B2S	POPTR_0010s04850	POPTR_0008s19620 (3:1857)//POPTR_0010s04850 (4:660)	scaffold_813:109-5338(-) (10)	NA	NA	NA	AT1G59840.2	cofactor assembly of complex C 	LOC_Os04g55690.1	"CCB4, putative, expressed"	Medtr5g038070.1	"cytochrome c biogenesis protein, putative, Ccb2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208719.1.S1_at	B	B2S	POPTR_0010s08390	POPTR_0010s08390 (7:2117)//POPTR_0010s08400 (4:1190)	NA	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.208721.1.S1_at	B	B1S	POPTR_0010s08460	POPTR_0010s08460 (6:963)	scaffold_10:9367777-9369748(+) (10)	NA	Q9FIY7	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3	AT5G43530.1	Helicase protein with RING/U-box domain 	LOC_Os04g09800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.208761.1.S1_at	B	B1S	POPTR_0010s09430	POPTR_0010s09430 (5:462)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208779.1.S1_at	B	B1S	POPTR_0010s09750	POPTR_0010s09750 (4:102)	scaffold_10:10411593-10412120(-) (11)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os03g06340.1	"XS domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208787.1.S1_at	B	B1A	POPTR_0010s09880	POPTR_0010s09880 (2:141)	scaffold_10:10497459-10498715(+) (10)	NA	Q9LHA8	Heat shock cognate 70 kDa protein 4	AT2G32120.2	heat-shock protein 70T-2 	LOC_Os03g11910.2	"DnaK family protein, putative, expressed"	Medtr5g006270.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208811.1.S1_at	B	B1S	POPTR_0010s10515	POPTR_0010s10515 (8:625)	NA	NA	P64956	Uncharacterized protein Mb2253c	AT1G24090.1	RNase H family protein 	LOC_Os08g08050.1	"retrotransposon protein, putative, unclassified"	Medtr2g120570.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	GO:0016234|inclusion body
PtpAffx.208833.1.S1_at	B	B1S	POPTR_0010s10980	POPTR_0010s10980 (8:403)	scaffold_10:11376655-11377062(+) (9)	NA	NA	NA	AT1G09290.1	unknown protein; Has 73 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os02g45090.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208834.1.S1_at	B	B1S	POPTR_0010s10990	POPTR_0010s10990 (8:698)	scaffold_10:11388420-11389135(-) (10)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G14600.1	Homeodomain-like superfamily protein 	LOC_Os03g03760.1	"MYB family transcription factor, putative, expressed"	Medtr1g039660.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20885.2.S1_at	B	B1S	POPTR_0016s12500	POPTR_0016s12500 (3:234)	NA	NA	Q9STZ2	SelT-like protein	AT3G47300.1	SELT-like protein precursor 	LOC_Os01g61580.3	"selT-like protein precursor, putative, expressed"	Medtr4g013030.1	SelT/selW/selH selenoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208875.1.S1_at	B	B1S	POPTR_0010s11870	POPTR_0010s11870 (7:976)	NA	NA	NA	NA	AT1G23230.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os02g49992.1	expressed protein	AC233676_14.1	hypothetical protein AC233676.2 65637-60727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208888.1.S1_at	B	B1S	POPTR_0010s12380	POPTR_0010s12380 (8:1510)	NA	NA	P77938	Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]	AT2G01350.4	quinolinate phoshoribosyltransferase 	LOC_Os09g38060.2	"nicotinate-nucleotide pyrophosphorylase, putative, expressed"	NA	NA	GO:0009435|NAD biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004514|nicotinate-nucleotide diphosphorylase (carboxylating) activity	NA
PtpAffx.208903.1.S1_at	B	B2S	POPTR_0010s12700	POPTR_0010s12700 (7:692)//POPTR_0006s22910 (0:293)	scaffold_10:12683411-12684147(+) (11)	NA	Q9FVS1	F-box/kelch-repeat protein At1g57790	AT1G57790.1	F-box family protein 	NA	NA	Medtr7g127580.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208911.1.S1_at	B	B1S	POPTR_0010s12810	POPTR_0010s12810 (5:815)	NA	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21230.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.208923.1.S1_at	B	B1A	POPTR_0010s13030	POPTR_0010s13030 (0:13)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208928.1.S1_at	B	B1A	POPTR_0010s13070	POPTR_0010s13070 (5:645)	scaffold_10:12973037-12984141(-) (9)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.2	Protein kinase superfamily protein 	LOC_Os01g04430.1	conserved hypothetical protein	Medtr1g140240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208933.1.S1_at	B	B2S	POPTR_0010s13130	POPTR_0010s13130 (8:1934)//POPTR_0008s12270 (5:1653)	NA	NA	Q9M9C6	Probable protein phosphatase 2C 15	AT1G68410.2	Protein phosphatase 2C family protein 	LOC_Os07g49040.1	"protein phosphotase protein, putative, expressed"	Medtr1g140400.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208938.1.S1_at	B	B1S	POPTR_0010s13220	POPTR_0010s13220 (5:255)	scaffold_10:13085710-13086160(+) (11)	NA	Q9ZSY2	Chaperone protein dnaJ 15	AT1G68370.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g32870.2	"heat shock protein DnaJ, putative, expressed"	Medtr1g140590.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208938.1.S1_s_at	B	B1S	POPTR_0010s13220	POPTR_0010s13220 (5:850)	scaffold_10:13085029-13086117(+) (11)	NA	Q9ZSY2	Chaperone protein dnaJ 15	AT1G68370.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g32870.2	"heat shock protein DnaJ, putative, expressed"	Medtr1g140590.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208950.1.S1_at	B	B1S	POPTR_0010s13440	POPTR_0010s13440 (4:187)	scaffold_10:13275786-13276084(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208958.1.S1_s_at	B	B1S	POPTR_0010s13680	POPTR_0010s13680 (5:35)	scaffold_10:13470005-13470114(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208993.1.S1_at	B	B1S	POPTR_0010s14390	POPTR_0010s14390 (5:193)	NA	NA	Q42679	S-adenosylmethionine decarboxylase proenzyme	AT3G25570.2	Adenosylmethionine decarboxylase family protein 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.209010.1.S1_at	B	B2S	POPTR_0010s14620	POPTR_0010s14620 (7:329)//POPTR_0008s11220 (0:295)	NA	NA	Q9BRX8	UPF0765 protein C10orf58	NA	NA	NA	NA	Medtr8g077060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209041.1.S1_at	B	B1S	POPTR_0010s15170	POPTR_0010s15170 (7:189)	scaffold_10:14515339-14517544(-) (11)	NA	O04266	GTP-binding protein SAR1A	AT1G02620.1	Ras-related small GTP-binding family protein 	LOC_Os01g23620.1	"miro, putative, expressed"	Medtr8g138060.1	ARF/SAR superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209042.1.S1_at	B	B1S	POPTR_0010s15190	POPTR_0010s15190 (2:392)	scaffold_10:14525154-14525843(+) (11)	NA	Q9M7X7	60S ribosomal protein L29-1	AT3G06680.1	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g137850.1	Ribosomal L29e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.209052.1.S1_at	B	B1S	POPTR_0010s15310	POPTR_0010s15310 (7:312)	scaffold_10:14637957-14638263(+) (11)	NA	O80483	Nicotianamine synthase 3	AT1G09240.1	nicotianamine synthase 3 	LOC_Os07g48980.1	"nicotianamine synthase, putative, expressed"	Medtr2g038330.1	Nicotianamine synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209085.1.S1_at	B	B1S	POPTR_0010s15870	POPTR_0010s15870 (1:205)	scaffold_10:14958923-14959468(-) (11)	NA	P22242	Desiccation-related protein PCC13-62	AT1G47980.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os04g33150.1	"desiccation-related protein PCC13-62 precursor, putative, expressed"	Medtr2g037710.1	"Desiccation-related protein PCC13-62 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209089.1.S1_at	B	B1S	POPTR_0010s15910	POPTR_0010s15910 (8:2263)	NA	NA	NA	NA	AT3G06520.1	agenet domain-containing protein 	LOC_Os05g04180.1	"agenet domain containing protein, putative, expressed"	Medtr2g037560.1	SH3; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.209098.1.S1_at	B	B1S	POPTR_0010s16090	POPTR_0010s16090 (8:1411)	scaffold_10:15132167-15133782(-) (9)	NA	Q9XIN1	Aluminum-activated malate transporter 7	AT2G27240.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105110.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209110.1.S1_at	B	B1S	POPTR_0010s16340	POPTR_0010s16340 (0:277)	NA	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.209121.1.S1_at	B	B1S	POPTR_0010s16650	POPTR_0010s16650 (4:208)	scaffold_10:15539176-15540459(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209131.1.S1_at	B	B1S	POPTR_0010s16910	POPTR_0010s16910 (7:327)	scaffold_10:15705146-15705673(+) (11)	NA	Q9C507	"Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial"	AT1G69350.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os11g29230.1	"pentatricopeptide repeat protein PPR986-12, putative, expressed"	Medtr5g046330.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209142.1.S1_at	B	B1S	POPTR_0010s17110	POPTR_0010s17110 (8:581)	scaffold_10:15845436-15846240(-) (11)	NA	Q6J9S1	Ethylene-responsive transcription factor RAP2-11	AT5G19790.1	related to AP2 11 	LOC_Os12g39330.1	"AP2 domain containing protein, expressed"	Medtr6g013450.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.209143.1.S1_at	B	B1S	POPTR_0010s17250	POPTR_0010s17250 (8:1773)	NA	NA	P94026	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT1G14030.1	Rubisco methyltransferase family protein 	LOC_Os09g24530.1	"ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209146.1.S1_at	B	B1S	POPTR_0010s17230	POPTR_0010s17230 (6:299)	scaffold_10:15906379-15907567(-) (10)	NA	Q6R8G0	Phosphate transporter PHO1 homolog 10	AT1G69480.1	EXS (ERD1/XPR1/SYG1) family protein 	NA	NA	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209148.1.S1_at	B	B1S	POPTR_0010s17250	POPTR_0010s17250 (4:27)	scaffold_10:15918777-15918899(-) (11)	NA	P94026	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT1G14030.1	Rubisco methyltransferase family protein 	LOC_Os09g24530.1	"ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209150.1.S1_at	B	B1S	POPTR_0010s17270	POPTR_0010s17270 (4:171)	scaffold_10:15962472-15962643(-) (11)	NA	Q6R8G0	Phosphate transporter PHO1 homolog 10	AT1G69480.1	EXS (ERD1/XPR1/SYG1) family protein 	NA	NA	Medtr7g010590.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209150.1.S1_x_at	B	B1S	POPTR_0010s17270	POPTR_0010s17270 (4:733)	scaffold_10:15961687-15962643(-) (11)	NA	Q6R8G0	Phosphate transporter PHO1 homolog 10	AT1G69480.1	EXS (ERD1/XPR1/SYG1) family protein 	NA	NA	Medtr7g010590.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209153.1.S1_x_at	B	B2S	POPTR_0010s17260	POPTR_0010s17220 (4:608)//POPTR_0010s17260 (6:605)	scaffold_10:15960798-15961405(+) (11)	NA	Q6R8G7	Phosphate transporter PHO1 homolog 3	AT1G14040.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.209156.1.S1_at	B	B1S	POPTR_0010s17360	POPTR_0010s17360 (3:179)	NA	NA	Q0G9G1	Putative membrane protein ycf1	ATCG01130.1	Ycf1 protein 	NA	NA	Medtr4g023010.1	Ycf1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209179.1.S1_at	B	B2S	POPTR_0010s17770	POPTR_0010s17770 (7:357)//POPTR_0010s17760 (2:116)	scaffold_10:16243003-16244518(-) (10)	NA	NA	NA	AT3G19870.1	unknown protein; Has 84 Blast hits to 64 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). 	LOC_Os02g58250.1	expressed protein	Medtr4g101310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209234.1.S1_at	B	B2S	POPTR_0010s18820	POPTR_0008s07670 (0:935)//POPTR_0010s18820 (8:457)	NA	NA	Q8BXJ9	Transmembrane protein 62	AT3G03305.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g66920.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g090110.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.209244.1.S1_at	B	B1S	POPTR_0010s18980	POPTR_0010s18980 (0:547)	NA	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G49690.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209253.1.S1_x_at	B	B1S	POPTR_0010s19130	POPTR_0010s19130 (8:793)	scaffold_10:17134481-17135594(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209255.1.S1_at	B	B1S	POPTR_0010s19150	POPTR_0010s19150 (5:1026)	scaffold_10:17145586-17146939(+) (10)	NA	Q9FLB0	DEAD-box ATP-dependent RNA helicase 18	AT5G05450.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g07080.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g094830.1	"Helicase, C-terminal; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2093.2.S1_at	B	B1S	POPTR_0003s06030	POPTR_0003s06030 (8:394)	NA	NA	NA	NA	AT1G15410.1	aspartate-glutamate racemase family 	LOC_Os01g37470.1	"asp/Glu racemase, putative, expressed"	Medtr2g125860.1	Aspartate racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209306.1.S1_at	B	B2S	POPTR_0010s20280	POPTR_0010s20280 (8:903)//POPTR_0010s20260 (4:703)	scaffold_10:17925542-17934655(-) (9)	NA	Q9FIA0	Cytokinin-N-glucosyltransferase 2	AT3G55700.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g13770.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g092660.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209337.1.S1_at	B	B2S	POPTR_0010s21140	POPTR_0010s21140 (7:341)//POPTR_0008s05590 (5:331)	NA	NA	NA	NA	AT3G55420.1	unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g38470.2	expressed protein	Medtr7g027080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209347.1.S1_at	B	B1S	POPTR_0010s21530	POPTR_0010s21530 (5:1136)	scaffold_10:18779504-18781096(+) (10)	NA	NA	NA	AT2G39580.1	CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os12g37890.1	expressed protein	Medtr7g025350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209354.1.S1_at	B	B1S	POPTR_0010s21770	POPTR_0010s21770 (3:512)	scaffold_10:18912016-18912701(-) (11)//scaffold_607:1585-5132(+) (11)	NA	NA	NA	AT3G09110.1	Protein of unknown function (DUF674) 	LOC_Os01g06030.1	conserved hypothetical protein	Medtr7g135290.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209354.1.S1_x_at	B	B1S	POPTR_0010s21770	POPTR_0010s21770 (3:512)	scaffold_607:1585-5132(+) (11)	NA	NA	NA	AT3G09110.1	Protein of unknown function (DUF674) 	LOC_Os01g06030.1	conserved hypothetical protein	Medtr7g135290.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209364.1.S1_at	B	B2S	POPTR_0010s22000	POPTR_0010s22000 (8:739)//POPTR_0010s21990 (0:21)	scaffold_10:19089610-19092553(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209399.1.S1_at	B	B1S	POPTR_0010s22850	POPTR_0010s22850 (6:224)	NA	NA	Q2MY58	Patatin group A-3	AT2G39220.1	PATATIN-like protein 6 	LOC_Os03g14950.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g121000.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.209399.1.S1_x_at	B	B1S	POPTR_0010s22850	POPTR_0010s22850 (8:443)	NA	NA	Q2MY58	Patatin group A-3	AT2G39220.1	PATATIN-like protein 6 	LOC_Os03g14950.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g121000.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.209410.1.S1_at	B	B1S	POPTR_0010s23090	POPTR_0010s23090 (0:50)	scaffold_10:19768889-19768941(-) (9)//scaffold_10:19777806-19777858(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209424.1.S1_at	B	B1S	POPTR_0010s23360	POPTR_0010s23360 (8:1781)	NA	NA	NA	NA	AT2G39140.1	pseudouridine synthase family protein 	LOC_Os03g05806.1	"pseudouridine synthase family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.209442.1.S1_s_at	B	B1A	POPTR_0010s23820	POPTR_0010s23820 (2:83)	scaffold_10:20292057-20293021(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209478.1.S1_at	B	B1S	POPTR_0010s25540	POPTR_0010s25540 (8:476)	scaffold_10:21176411-21176904(-) (10)	NA	Q9LSG3	Galacturonosyltransferase 8	AT3G25140.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g49810.1	"glycosyl transferase family 8, putative, expressed"	Medtr7g083410.1	"Glycosyl transferase, family 8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209481.1.S1_at	B	B2S	POPTR_0010s25520	POPTR_0010s25520 (3:215)//POPTR_0387s00220 (0:115)	scaffold_10:21148808-21148901(-) (10)	NA	Q5UPJ7	Tyrosyl-tRNA synthetase	AT2G33840.1	"Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial "	LOC_Os08g05490.1	"tRNA synthetase, putative, expressed"	Medtr1g008380.1	"Aminoacyl-tRNA synthetase, class Ib; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.2095.1.S1_at	B	B1S	POPTR_0012s03600	POPTR_0012s03600 (8:1430)	NA	NA	Q9WY68	Putative 1-aminocyclopropane-1-carboxylate deaminase	AT1G48420.1	D-cysteine desulfhydrase 	LOC_Os02g53330.2	"1-aminocyclopropane-1-carboxylate deaminase, putative, expressed"	Medtr4g154480.1	Pyridoxal phosphate-dependent deaminase 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.20952.1.S1_at	B	B1S	POPTR_0006s11470	POPTR_0006s11470 (8:4484)	NA	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os11g03050.1	"cytidylyltransferase domain containing protein, expressed"	Medtr7g081050.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.209536.1.S1_at	B	B1S	POPTR_0010s24480	POPTR_0010s24480 (8:447)	NA	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT5G04740.1	ACT domain-containing protein 	LOC_Os12g05650.1	"ACT domain containing protein, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209541.1.S1_at	B	B1S	POPTR_0010s24350	POPTR_0010s24350 (0:424)	NA	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.209541.1.S1_x_at	B	B1S	POPTR_0010s24350	POPTR_0010s24350 (4:1483)	NA	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g39430.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g117120.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.209552.1.S1_at	B	B1S	POPTR_0010s24200	POPTR_0010s24200 (7:680)	scaffold_10:20523878-20524939(+) (9)	NA	Q8GVE3	Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase	AT2G18570.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g47550.1	"glucosyltransferase, putative, expressed"	Medtr8g008690.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209554.1.S1_at	B	B1S	POPTR_0010s24160	POPTR_0010s24160 (8:2397)	NA	NA	Q8W571	RING-H2 finger protein ATL32	AT4G40070.1	RING/U-box superfamily protein 	LOC_Os02g45390.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209554.1.S1_x_at	B	B1S	POPTR_0010s24160	POPTR_0010s24160 (8:2500)	NA	NA	Q8W571	RING-H2 finger protein ATL32	AT4G40070.1	RING/U-box superfamily protein 	LOC_Os02g45390.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209584.1.S1_at	B	B1S	POPTR_0021s00650	POPTR_0021s00650 (8:665)	scaffold_21:353146-353911(-) (10)	NA	Q43846	"Soluble starch synthase 3, chloroplastic/amyloplastic"	AT1G11720.2	starch synthase 3 	LOC_Os04g53310.1	"soluble starch synthase 3, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209608.1.S1_at	B	B2S	POPTR_0021s00250	POPTR_0011s00240 (0:1916)//POPTR_0021s00250 (8:463)	NA	NA	O65456	Probable pectate lyase 16	AT4G22080.1	root hair specific 14 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g147150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209618.1.S1_at	B	B2S	POPTR_0011s00200	POPTR_0011s01390 (3:251)//POPTR_0011s00200 (5:246)	NA	NA	NA	NA	AT1G05070.1	Protein of unknown function (DUF1068) 	LOC_Os03g56610.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209620.1.S1_at	B	B1S	POPTR_0011s01440	POPTR_0011s01440 (8:511)	NA	NA	Q9Y4C1	Lysine-specific demethylase 3A	AT1G11950.1	Transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os03g31594.1	"jmjC domain containing protein, expressed"	Medtr8g147200.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209631.1.S1_x_at	B	B2S	POPTR_0004s01610	POPTR_0015s14350 (1:595)//POPTR_0004s01610 (7:233)	NA	NA	Q9LZY0	65-kDa microtubule-associated protein 4	AT3G60840.1	microtubule-associated protein 65-4 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr6g067160.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209637.1.S1_at	B	B1S	POPTR_0011s01710	POPTR_0011s01710 (6:136)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209638.1.S1_at	B	B1S	POPTR_0011s01710	POPTR_0011s01710 (1:1087)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209642.1.S1_x_at	B	B3S	POPTR_2359s00010	POPTR_0011s01840 (3:344)//POPTR_2359s00010 (7:316)//POPTR_0011s01805 (2:25)	scaffold_2359:2785-3138(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g024610.1	TIR; Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209650.1.S1_x_at	B	B1S	POPTR_0011s01680	POPTR_0011s01680 (7:345)	scaffold_11:1207379-1207818(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209659.1.S1_at	B	B1S	POPTR_0017s09350	POPTR_0017s09350 (7:535)	scaffold_11:747109-747582(-) (10)	NA	NA	NA	NA	NA	LOC_Os07g13350.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209663.1.S1_at	B	B1S	POPTR_0011s02040	POPTR_0011s02040 (1:211)	scaffold_11:616527-616744(+) (11)	NA	NA	NA	AT3G54070.1	Ankyrin repeat family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr2g025590.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209665.1.S1_at	B	B1S	POPTR_0011s01020	POPTR_0011s01020 (2:1544)	NA	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209675.1.S1_at	B	B1S	POPTR_0011s00670	POPTR_0011s00670 (8:2259)	scaffold_11:331743-333948(+) (9)	NA	Q9VR91	Probable E3 ubiquitin-protein ligase HERC2	AT5G60870.2	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os09g38755.1	"E3 ubiquitin-protein ligase HERC2, putative, expressed"	Medtr7g047420.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209692.1.S1_at	B	B1S	POPTR_0017s09160	POPTR_0017s09160 (7:2051)	scaffold_17:7820345-7823071(+) (9)	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os05g41370.1	"TKL_IRAK_DUF26-la.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209766.1.S1_at	B	B1S	POPTR_0008s00290	POPTR_0008s00290 (1:625)	scaffold_11:2132914-2133395(+) (11)	NA	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog 1	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58130.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20977.1.A1_at	B	B1S	POPTR_0001s22010	POPTR_0001s22010 (5:251)	NA	NA	Q96JG6	Coiled-coil domain-containing protein 132	AT2G27900.2	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os10g39910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209781.1.S1_at	B	B1S	POPTR_0011s02650	POPTR_0011s02650 (4:124)	scaffold_11:2560200-2560942(+) (11)	NA	O49730	Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog	AT4G18270.1	translocase 11 	LOC_Os01g11260.1	"phospho-N-acetylmuramoyl-pentapeptide-transferase, putative, expressed"	Medtr2g024820.1	"Glycosyl transferase, family 4 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209791.1.S1_s_at	B	B2S	POPTR_0001s34390	POPTR_0001s34390 (8:168)//POPTR_0011s02890 (8:168)	NA	NA	NA	NA	AT5G46410.2	SCP1-like small phosphatase 4 	NA	NA	Medtr2g056340.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209797.1.S1_at	B	B1S	POPTR_0011s03060	POPTR_0011s03060 (6:261)	scaffold_11:3060969-3061410(+) (11)	NA	Q2V3H0	"Pentatricopeptide repeat-containing protein At4g18975, chloroplastic"	AT4G18975.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g36180.2	"pentatricopeptide, putative, expressed"	Medtr8g147600.1	Immunoglobulin/major histocompatibility complex 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209799.1.S1_at	B	B1S	POPTR_0011s03120	POPTR_0011s03120 (0:446)	NA	NA	NA	NA	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209803.1.S1_x_at	B	B7S	POPTR_0011s03210	POPTR_0011s06110 (5:608)//POPTR_0011s03210 (5:608)//POPTR_0011s06700 (0:598)//POPTR_0011s06620 (1:598)//POPTR_0011s06650 (0:598)//POPTR_0011s06100 (2:595)//POPTR_0011s06170 (1:593)	NA	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G29720.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.209809.1.S1_at	B	B1S	POPTR_0040s00206	POPTR_0040s00206 (2:136)	scaffold_11:10915059-10916007(-) (10)//scaffold_40:237167-244167(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209821.1.S1_at	B	B1S	POPTR_0011s09100	POPTR_0011s09100 (4:325)	scaffold_11:11276896-11277877(+) (10)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os04g28180.1	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	GO:0005622|intracellular
PtpAffx.209843.1.S1_at	B	B1S	POPTR_0011s09630	POPTR_0011s09630 (4:226)	scaffold_11:12000401-12000995(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209846.1.S1_at	B	B1S	POPTR_0001s37950	POPTR_0001s37950 (0:496)	NA	NA	Q9LK50	ABC transporter G family member 26	AT3G13220.1	ABC-2 type transporter family protein 	LOC_Os06g40550.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g103980.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.209847.1.S1_at	B	B1S	POPTR_0011s09750	POPTR_0011s09750 (6:1278)	NA	NA	Q9FPS9	Ubiquitin carboxyl-terminal hydrolase 15	AT1G17110.1	ubiquitin-specific protease 15 	LOC_Os02g14730.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.209849.1.S1_at	B	B1S	POPTR_3041s00200	POPTR_3041s00200 (8:509)	scaffold_3041:72-589(-) (9)	NA	Q70XZ0	Apocytochrome f	ATCG00540.1	photosynthetic electron transfer A 	LOC_Os10g21290.1	"apocytochrome f precursor, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209864.1.S1_at	B	B3S	POPTR_0008s16400	POPTR_0008s16400 (3:159)//POPTR_2361s00200 (3:158)//POPTR_0017s09060 (2:100)	scaffold_11:12434229-12434372(-) (9)//scaffold_174:18229-18405(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209871.1.S1_at	B	B12S	POPTR_0011s06380	POPTR_0011s06350 (0:767)//POPTR_0011s06450 (0:764)//POPTR_0011s03200 (0:762)//POPTR_0011s06380 (3:758)//POPTR_0011s06270 (0:758)//POPTR_0011s06500 (3:757)//POPTR_0011s06230 (0:756)//POPTR_0011s06470 (0:753)//POPTR_0122s00200 (0:751)//POPTR_0011s06140 (0:743)//POPTR_0011s06590 (0:707)//POPTR_0011s06610 (3:655)	NA	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.209873.1.S1_at	B	B5S	POPTR_0011s08020	POPTR_0011s08020 (8:572)//POPTR_0011s06700 (3:532)//POPTR_0011s06660 (3:532)//POPTR_0011s06570 (0:524)//POPTR_0011s06100 (0:491)	NA	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20990.2.A1_at	B	B1S	POPTR_0008s01330	POPTR_0008s01330 (4:81)	NA	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.1	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.209902.1.S1_at	B	B1S	POPTR_0011s07381	POPTR_0011s07381 (7:538)	NA	NA	Q9LP46	Protein SCAR3	AT1G29170.3	SCAR family protein 	LOC_Os01g11040.1	"SCAR-like protein 2, putative, expressed"	Medtr4g134650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209912.1.S1_at	B	B1S	POPTR_0011s07625	POPTR_0011s07625 (8:1196)	NA	NA	Q9LKA3	"Malate dehydrogenase 2, mitochondrial"	AT3G15020.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.209968.1.S1_at	B	B1S	POPTR_0011s11980	POPTR_0011s11980 (6:365)	NA	NA	NA	NA	AT1G53035.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g100230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209986.1.S1_at	B	B1S	POPTR_0011s12450	POPTR_0011s12450 (8:343)	NA	NA	P82869	"Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic"	AT3G15520.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g37830.2	"peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209998.1.S1_at	B	B1S	POPTR_0011s12690	POPTR_0011s12690 (4:784)	scaffold_11:15399769-15402320(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210002.1.S1_at	B	B1S	POPTR_0011s12780	POPTR_0011s12780 (7:706)	scaffold_11:15468466-15469332(+) (10)	NA	Q8TFG7	tRNA (guanine-N(1)-)-methyltransferase	AT4G27340.1	Met-10+ like family protein 	LOC_Os01g29409.1	"tRNA methyltransferase, putative, expressed"	Medtr2g095630.1	Protein of unknown function Met10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210019.1.S1_at	B	B1S	POPTR_0011s13400	POPTR_0011s13400 (7:427)	scaffold_11:16159980-16160413(-) (9)	NA	Q9VCA2	Organic cation transporter protein	AT3G20660.1	organic cation/carnitine transporter4 	LOC_Os04g53930.2	"organic cation transporter protein, putative, expressed"	Medtr2g096180.1	Major facilitator superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210048.1.S1_at	B	B2S	POPTR_0011s13860	POPTR_0011s13860 (8:3142)//POPTR_0001s44500 (0:1941)	NA	NA	Q9CXF4	TBC1 domain family member 15	AT5G54780.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os11g37690.1	"TBC domain containing protein, expressed"	Medtr2g097180.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.210063.1.S1_at	B	B2S	POPTR_0011s14110	POPTR_0011s14110 (5:338)//POPTR_0001s44900 (0:334)	scaffold_11:16659532-16659921(-) (11)	NA	Q9AXM6	Taxane 10-beta-hydroxylase	AT5G36140.1	"cytochrome P450, family 716, subfamily A, polypeptide 2 "	LOC_Os07g33620.1	"cytochrome P450 domain containing protein, expressed"	Medtr5g099470.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210063.1.S1_x_at	B	B2S	POPTR_0011s14110	POPTR_0011s14110 (7:337)//POPTR_0001s44900 (1:334)	scaffold_11:16659533-16659921(-) (11)	NA	Q9AXM6	Taxane 10-beta-hydroxylase	AT5G36140.1	"cytochrome P450, family 716, subfamily A, polypeptide 2 "	LOC_Os07g33620.1	"cytochrome P450 domain containing protein, expressed"	Medtr5g099470.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210081.1.S1_at	B	B1A	POPTR_0011s14560	POPTR_0011s14560 (8:409)	scaffold_11:16917025-16917764(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210114.1.S1_at	B	B1S	POPTR_0011s15260	POPTR_0011s15260 (7:231)	scaffold_11:17366278-17367822(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210127.1.S1_at	B	B3S	POPTR_0011s15490	POPTR_0011s15490 (8:85)//POPTR_0011s15500 (8:85)//POPTR_0011s15530 (8:84)	NA	NA	Q949X0	"Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic"	AT3G15850.1	fatty acid desaturase 5 	NA	NA	Medtr4g005600.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.210133.1.S1_at	B	B1S	POPTR_0011s15700	POPTR_0011s15700 (7:130)	scaffold_11:17793779-17793925(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210133.1.S1_x_at	B	B1S	POPTR_0011s15700	POPTR_0011s15700 (8:130)	scaffold_11:17793779-17793925(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210135.1.S1_at	B	B1S	POPTR_0011s15720	POPTR_0011s15720 (8:769)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210141.1.S1_at	B	B1S	POPTR_0011s15830	POPTR_0011s15830 (1:194)	scaffold_11:17879649-17880319(-) (9)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os07g36590.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210143.1.S1_at	B	B1A	POPTR_0011s15850	POPTR_0011s15850 (8:395)	scaffold_11:17893662-17894246(+) (10)	NA	NA	NA	AT1G30800.1	Fasciclin-like arabinogalactan family protein 	NA	NA	AC225479_21.1	Beta-Ig-H3/fasciclin AC225479.3 95792-95115 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210144.1.S1_at	B	B1S	POPTR_0011s15880	POPTR_0011s15880 (7:333)	scaffold_11:17904710-17905140(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210205.1.S1_at	B	B1S	POPTR_0012s01000	POPTR_0012s01000 (8:36)	NA	NA	Q6AZT2	Spastin	AT1G64110.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g50750.1	"AAA family ATPase, putative, expressed"	Medtr5g009960.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.210219.1.S1_at	B	B1S	POPTR_0012s01290	POPTR_0012s01290 (8:55)	NA	NA	NA	NA	AT3G57450.1	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210229.1.S1_s_at	B	B1S	POPTR_0012s01490	POPTR_0012s01490 (3:622)	scaffold_12:1118665-1119373(+) (11)	NA	NA	NA	AT5G24130.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g15740.1	expressed protein	Medtr3g124560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210231.1.S1_at	B	B1S	POPTR_0012s01500	POPTR_0012s01500 (0:879)	NA	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210232.1.S1_s_at	B	B1S	POPTR_0288s00200	POPTR_0288s00200 (8:31)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210244.1.S1_x_at	B	B2S	POPTR_0197s00200	POPTR_0012s01770 (2:1092)//POPTR_0197s00200 (8:773)	scaffold_12:1329855-1337086(+) (9)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.1	Protein kinase superfamily protein 	LOC_Os01g02400.1	"protein kinase domain containing protein, expressed"	Medtr1g034440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210246.1.S1_at	B	B4S	POPTR_0012s01750	POPTR_0197s00200 (3:517)//POPTR_0012s01760 (3:517)//POPTR_0012s01750 (7:514)//POPTR_0012s01770 (6:514)	scaffold_12:1330101-1340587(+) (10)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr4g098520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210246.1.S1_x_at	B	B4S	POPTR_0012s01750	POPTR_0197s00200 (4:516)//POPTR_0012s01760 (2:516)//POPTR_0012s01750 (7:513)//POPTR_0012s01770 (4:513)	scaffold_12:1329916-1340587(+) (9)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.2	Protein kinase superfamily protein 	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr4g098520.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210303.1.S1_at	B	B2S	POPTR_0012s02740	POPTR_0012s02750 (5:561)//POPTR_0012s02740 (8:540)	scaffold_12:2257434-2267831(-) (9)	NA	Q9C9H7	Receptor-like protein 12	AT4G13810.1	receptor like protein 47 	LOC_Os01g06520.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr5g094230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.210320.1.S1_at	B	B4S	POPTR_0011s07880	POPTR_0046s00290 (0:628)//POPTR_0011s07890 (0:496)//POPTR_0011s07880 (0:495)//POPTR_0012s00800 (0:465)	NA	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os12g12010.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094030.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.210322.1.S1_at	B	B2S	POPTR_0039s00230	POPTR_0039s00300 (5:437)//POPTR_0039s00230 (7:421)	NA	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os01g06730.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.210327.1.S1_x_at	B	B1S	POPTR_0006s21900	POPTR_0006s21900 (7:368)	scaffold_6:20851775-20871308(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210334.1.S1_x_at	B	B6S	POPTR_0039s00220	POPTR_0726s00210 (1:2433)//POPTR_0039s00220 (8:1192)//POPTR_0011s07960 (1:749)//POPTR_0262s00200 (1:668)//POPTR_0012s03255 (2:624)//POPTR_0011s07820 (1:618)	NA	NA	P19954	"30S ribosomal protein 1, chloroplastic"	AT5G24490.1	"30S ribosomal protein, putative "	LOC_Os03g63950.1	"plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed"	Medtr3g122720.1	Sigma 54 modulation protein/ribosomal protein S30EA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210339.1.S1_x_at	B	B4S	POPTR_0012s03220	POPTR_0039s00300 (2:206)//POPTR_0046s00310 (1:206)//POPTR_0012s03220 (2:206)//POPTR_0039s00310 (1:206)	NA	NA	Q8LPB4	Phytosulfokine receptor 1	AT3G05660.1	receptor like protein 33 	LOC_Os04g40440.1	expressed protein	Medtr4g084300.1	hypothetical protein 	NA	GO:0005515|protein binding	NA
PtpAffx.210345.1.S1_x_at	B	B4S	POPTR_0011s07950	POPTR_0011s07950 (7:506)//POPTR_0012s03200 (1:345)//POPTR_0046s00240 (1:326)//POPTR_0012s03190 (0:178)	NA	NA	NA	NA	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.2	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210346.1.S1_x_at	B	B7S	POPTR_0046s00250	POPTR_0039s00300 (4:569)//POPTR_0046s00310 (3:569)//POPTR_0012s03220 (4:569)//POPTR_0039s00310 (3:555)//POPTR_0039s00230 (3:553)//POPTR_0046s00250 (5:345)//POPTR_0012s00840 (0:332)	scaffold_46:52551-53372(-) (9)	NA	Q8LPB4	Phytosulfokine receptor 1	AT3G05660.1	receptor like protein 33 	LOC_Os01g04070.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr5g103000.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.210356.1.S1_at	B	B1S	POPTR_0014s14670	POPTR_0014s14670 (2:2533)	scaffold_12:396454-396890(-) (11)	NA	P31828	Probable zinc protease pqqL	AT5G42390.1	Insulinase (Peptidase family M16) family protein 	LOC_Os06g41990.2	"M16 domain containing zinc peptidase, putative, expressed"	Medtr5g007490.1	"Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.210364.1.S1_at	B	B4S	POPTR_0012s00230	POPTR_0012s00260 (8:31)//POPTR_0012s00490 (8:31)//POPTR_0012s00550 (8:31)//POPTR_0012s00230 (8:31)	NA	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210374.1.S1_s_at	B	B1S	POPTR_0012s00360	POPTR_0012s00360 (1:64)	scaffold_12:66312-66770(+) (11)//scaffold_12:110597-111055(+) (11)	NA	Q9C7F8	ABC transporter B family member 13	AT1G27940.1	P-glycoprotein 13 	LOC_Os08g05690.1	"ABC transporter, ATP-binding protein, putative"	Medtr3g121950.1	Cyclic peptide transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210386.1.S1_at	B	B1S	POPTR_0012s04360	POPTR_0012s04360 (8:761)	NA	NA	P68175	Strictosidine synthase	AT1G74000.1	strictosidine synthase 3 	LOC_Os12g04424.1	"strictosidine synthase, putative, expressed"	Medtr8g115470.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.210394.1.S1_s_at	B	B1S	POPTR_0018s12470	POPTR_0018s12470 (3:81)	scaffold_12:3837865-3837946(+) (11)	NA	NA	NA	AT2G36670.2	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.2	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr7g124500.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210409.1.S1_at	B	B1S	POPTR_0012s04910	POPTR_0012s04910 (5:639)	scaffold_12:4373866-4374524(+) (9)	NA	Q9LUS2	"Translocase of chloroplast 120, chloroplastic"	AT3G16620.1	translocon outer complex protein 120 	LOC_Os10g40110.1	"GTP binding protein, putative, expressed"	Medtr2g130100.1	AIG1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210455.1.S1_at	B	B1A	POPTR_0012s05770	POPTR_0012s05770 (6:396)	scaffold_12:5576840-5577358(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210460.1.S1_at	B	B1S	POPTR_0012s05880	POPTR_0012s05880 (6:391)	scaffold_12:5733852-5734658(-) (9)	NA	NA	NA	AT1G74220.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03630.1); Has 383 Blast hits to 347 proteins in 86 species: Archae - 0; Bacteria - 17; Metazoa - 87; Fungi - 65; Plants - 76; Viruses - 2; Other Eukaryotes - 136 (source: NCBI BLink). "	LOC_Os07g20270.1	expressed protein	Medtr3g036580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210466.1.S1_at	B	B1S	POPTR_0012s05970	POPTR_0012s05970 (7:127)	scaffold_12:5956632-5956819(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210469.1.S1_at	B	B1S	POPTR_0012s12660	POPTR_0012s12660 (1:158)	scaffold_12:13012853-13013877(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210475.1.S1_at	B	B1S	POPTR_0012s12405	POPTR_0012s12405 (7:445)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210475.1.S1_x_at	B	B1S	POPTR_0012s12405	POPTR_0012s12405 (8:445)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210498.1.S1_at	B	B2S	POPTR_0012s06980	POPTR_0015s07200 (0:2118)//POPTR_0012s06980 (6:1637)	NA	NA	Q9FLQ7	Formin-like protein 20	AT5G07740.1	actin binding 	LOC_Os07g40510.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g016730.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210512.1.S1_at	B	B2S	POPTR_0001s08730	POPTR_0011s01952 (2:551)//POPTR_0001s08730 (2:551)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr6g036540.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.210521.1.S1_s_at	B	B1S	POPTR_0012s07290	POPTR_0012s07290 (2:389)	scaffold_12:8144185-8147214(-) (9)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT5G62710.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g44090.1	"leucine-rich repeat family protein, putative, expressed"	Medtr8g113060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210562.1.S1_at	B	B1S	POPTR_0012s08140	POPTR_0012s08140 (8:3165)	scaffold_12:9195315-9200081(+) (10)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT1G62400.1	Protein kinase superfamily protein 	LOC_Os01g01740.1	"protein kinase domain containing protein, expressed"	Medtr3g113630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.210580.1.S1_at	B	B2S	POPTR_0012s08460	POPTR_0018s03960 (0:291)//POPTR_0012s08460 (3:117)	scaffold_12:9551383-9551674(-) (11)	NA	Q9SY75	Putative pentatricopeptide repeat-containing protein At1g10330	AT1G10330.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g18950.1	"pentatricopeptide, putative, expressed"	Medtr4g108510.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210594.1.S1_at	B	B1S	POPTR_0012s08770	POPTR_0012s08770 (8:910)	NA	NA	Q5RC94	Next to BRCA1 gene 1 protein	AT4G24690.1	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein 	LOC_Os02g38050.3	"joka2, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.210598.1.S1_at	B	B2S	POPTR_0012s08900	POPTR_0012s08900 (6:422)//POPTR_0012s08910 (3:132)	scaffold_12:9959942-9965797(-) (9)	NA	Q84JS6	Homeobox protein knotted-1-like 6	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.210598.1.S1_s_at	B	B2S	POPTR_0012s08900	POPTR_0012s08900 (6:506)//POPTR_0012s08910 (5:213)	scaffold_12:9959858-9965878(-) (11)	NA	Q84JS6	Homeobox protein knotted-1-like 6	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.210607.1.S1_at	B	B1S	POPTR_0012s09130	POPTR_0012s09130 (4:432)	NA	NA	Q84W65	"SufE-like protein, chloroplastic"	AT5G50210.1	quinolinate synthase 	LOC_Os12g19304.2	"Fe-S metabolism associated domain containing protein, expressed"	Medtr3g102410.1	Fe-S metabolism associated SufE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210607.1.S1_x_at	B	B1S	POPTR_0012s09130	POPTR_0012s09130 (6:475)	NA	NA	Q84W65	"SufE-like protein, chloroplastic"	AT5G50210.1	quinolinate synthase 	LOC_Os12g19304.2	"Fe-S metabolism associated domain containing protein, expressed"	Medtr3g102410.1	Fe-S metabolism associated SufE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210617.1.S1_at	B	B2S	POPTR_0012s09390	POPTR_0015s10040 (5:2414)//POPTR_0012s09390 (6:1668)	scaffold_12:10426176-10427913(+) (9)	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT3G48430.1	relative of early flowering 6 	LOC_Os12g18150.1	"ZOS12-04 - C2H2 zinc finger protein, expressed"	AC235753_2.1	"Transcription factor jumonji, jmjC; Zinc finger, C2H2-type; ; AC235753.1 4557-10832 E EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.210635.1.S1_at	B	B1S	POPTR_0012s09700	POPTR_0012s09700 (7:1225)	scaffold_12:10656968-10658255(-) (9)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G63390.1	O-fucosyltransferase family protein 	LOC_Os09g37590.1	"OsFBDUF47 - F-box and DUF domain containing protein, expressed"	Medtr3g031560.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210655.1.S1_at	B	B1S	POPTR_0012s10090	POPTR_0012s10090 (2:383)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210669.1.S1_at	B	B2S	POPTR_0012s10320	POPTR_0012s10320 (7:984)//POPTR_0015s11160 (0:926)	NA	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os02g30650.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150800.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.210669.1.S1_x_at	B	B1S	POPTR_0012s10320	POPTR_0012s10320 (7:1005)	NA	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os02g30650.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150800.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.210686.1.S1_at	B	B1S	POPTR_0012s10660	POPTR_0012s10660 (8:553)	scaffold_12:11366204-11366747(-) (10)	NA	NA	NA	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.210715.1.S1_at	B	B1S	POPTR_0012s11380	POPTR_0012s11380 (6:1373)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210717.1.S1_at	B	B2S	POPTR_0012s11370	POPTR_0012s11370 (7:1961)//POPTR_0012s11380 (4:332)	scaffold_12:11841904-11847050(+) (11)	NA	P42762	"ERD1 protein, chloroplastic"	AT5G51070.1	Clp ATPase 	LOC_Os02g32520.1	"ERD1 protein, chloroplast precursor, putative, expressed"	Medtr3g151610.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210724.1.S1_at	B	B1S	POPTR_0012s12830	POPTR_0012s12830 (0:16)	scaffold_12:13229115-13232094(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21075.1.S1_at	B	B3S	POPTR_0004s17240	POPTR_0004s17240 (8:410)//POPTR_0004s17280 (7:410)//POPTR_0004s17250 (7:410)	NA	NA	P33083	Auxin-induced protein 6B	AT4G38840.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02530.1	OsSAUR32 - Auxin-responsive SAUR gene family member	Medtr4g097950.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210753.1.S1_at	B	B1S	POPTR_0012s13500	POPTR_0012s13500 (7:597)	scaffold_12:13635732-13636999(+) (11)	NA	NA	NA	AT4G23380.1	Protein of Unknown Function (DUF239) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210759.1.S1_at	B	B1S	POPTR_0012s13690	POPTR_0012s13690 (8:412)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210779.1.S1_at	B	B2S	POPTR_0012s14110	POPTR_0012s14110 (6:1499)//POPTR_0012s14100 (5:982)	scaffold_12:14111040-14117814(-) (11)	NA	Q9FLI3	Probable protein phosphatase 2C 75	AT5G51760.1	Protein phosphatase 2C family protein 	LOC_Os03g16170.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210785.1.S1_at	B	B1S	POPTR_0012s14240	POPTR_0012s14240 (6:74)	NA	NA	Q8VYR9	K(+) efflux antiporter 5	AT5G51710.2	K+ efflux antiporter 5 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr4g160810.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.210788.1.S1_at	B	B1S	POPTR_0012s14280	POPTR_0012s14280 (8:492)	scaffold_12:14233849-14234439(+) (11)	NA	Q8GYY0	Probable aminotransferase ACS12	AT5G51690.1	1-amino-cyclopropane-1-carboxylate synthase 12 	LOC_Os06g03990.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g011530.1	"Aminotransferase, class I and II; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210801.1.S1_x_at	B	B2S	POPTR_0242s00220	POPTR_0242s00220 (3:454)//POPTR_0012s14830 (1:448)	scaffold_12:14534230-14534659(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210812.1.S1_at	B	B2S	POPTR_0012s14970	POPTR_0012s14970 (6:1225)//POPTR_0012s12330 (3:1109)	NA	NA	O82178	Pentatricopeptide repeat-containing protein At2g35130	AT2G35130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g07360.1	"pentatricopeptide containing protein, putative, expressed"	Medtr2g041460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210817.1.S1_at	B	B2S	POPTR_0012s14980	POPTR_0012s14980 (3:456)//POPTR_0012s15010 (3:450)	NA	NA	O23708	Proteasome subunit alpha type-2-A	AT1G16470.2	proteasome subunit PAB1 	LOC_Os02g42320.2	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.210818.1.S1_at	B	B3S	POPTR_0012s15160	POPTR_0012s15160 (7:425)//POPTR_0012s15130 (0:397)//POPTR_0012s15000 (0:392)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g45180.1	"NBS-LRR disease resistance protein, putative"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.210848.1.S1_at	B	B1S	POPTR_0013s00910	POPTR_0013s00910 (7:1809)	scaffold_13:458822-461441(+) (11)	NA	NA	NA	AT5G26800.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g19400.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210852.1.S1_at	B	B1S	POPTR_0013s00980	POPTR_0013s00980 (4:136)	scaffold_13:516509-518067(+) (9)	NA	Q5ZKQ3	RNA polymerase II-associated protein 3	AT1G56440.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g03910.1	"RNA polymerase II-associated protein 3, putative, expressed"	Medtr4g154900.1	Amidase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210876.1.S1_at	B	B1S	POPTR_0013s01420	POPTR_0013s01420 (4:724)	NA	NA	O80494	F-box protein PP2-B15	AT1G09155.1	phloem protein 2-B15 	LOC_Os02g56760.1	OsFBX66 - F-box domain containing protein	Medtr7g138360.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210919.1.S1_at	B	B1S	POPTR_0013s02470	POPTR_0013s02470 (6:341)	scaffold_13:1467050-1468136(-) (10)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT1G54860.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210987.1.S1_at	B	B1S	POPTR_0013s03640	POPTR_0013s03640 (7:1784)	NA	NA	O74343	Putative pseudouridine synthase C1A4.09	AT3G04820.1	Pseudouridine synthase family protein 	LOC_Os01g56620.1	"pseudouridylate synthase, putative, expressed"	Medtr7g140700.1	"RNA binding ^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210992.1.S1_at	B	B1S	POPTR_0633s00200	POPTR_0633s00200 (4:1295)	scaffold_633:5025-7624(+) (9)	NA	NA	NA	AT4G02260.1	RELA/SPOT homolog 1 	LOC_Os03g22160.1	"relA-SpoT like protein RSH1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211.1.A1_at	B	B1S	POPTR_0001s28880	POPTR_0001s28880 (1:742)	NA	NA	NA	NA	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211010.1.S1_at	B	B1S	POPTR_0013s04230	POPTR_0013s04230 (7:1470)	NA	NA	O04847	Deacetoxyvindoline 4-hydroxylase	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g30210.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed"	Medtr2g088220.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211022.1.S1_at	B	B2S	POPTR_0013s04550	POPTR_0013s04550 (8:1843)//POPTR_0013s04560 (2:996)	scaffold_13:3116372-3122399(-) (11)	NA	Q8W595	Histone-lysine N-methyltransferase SUVR4	AT3G04380.1	SET-domain containing protein lysine methyltransferase family protein 	LOC_Os02g40770.2	"SET domain containing protein, expressed"	Medtr1g093770.1	Pre-SET; Histone H3-K9 methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211026.1.S1_at	B	B1S	POPTR_0013s04590	POPTR_0013s04590 (5:282)	scaffold_13:3148105-3148588(+) (11)	NA	Q9FKP8	ZF-HD homeobox protein At5g65410	AT2G33320.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os12g10630.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr1g093800.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211035.1.S1_at	B	B1S	POPTR_0013s04720	POPTR_0013s04720 (1:237)	NA	NA	NA	NA	AT5G37360.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g57030.1	expressed protein	Medtr1g093310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211051.1.S1_at	B	B2S	POPTR_0013s05090	POPTR_0013s05100 (5:1185)//POPTR_0013s05090 (5:888)	scaffold_13:3602569-3606994(+) (11)	NA	NA	NA	AT2G39050.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os07g48500.1	"stress responsive protein, putative, expressed"	Medtr7g100110.1	"glycoamidase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211071.1.S1_at	B	B1S	POPTR_0013s05500	POPTR_0013s05500 (4:51)	NA	NA	Q552J0	T-complex protein 1 subunit theta	AT3G03960.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g59020.1	"T-complex protein, putative, expressed"	Medtr6g030660.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.211087.1.S1_at	B	B2S	POPTR_0013s05820	POPTR_0013s05840 (2:1228)//POPTR_0013s05820 (6:1174)	NA	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.211099.1.S1_at	B	B1S	POPTR_0013s06170	POPTR_0013s06170 (2:1469)	scaffold_13:4554276-4556245(-) (11)	NA	Q5EA98	Microfibrillar-associated protein 1	AT5G17900.1	microfibrillar-associated protein-related 	LOC_Os02g17870.1	"microfibrillar-associated protein 1, putative, expressed"	Medtr4g132710.1	"Micro-fibrillar-associated 1, C-terminal "	NA	NA	GO:0005576|extracellular region
PtpAffx.2111.1.S1_at	B	B1A	POPTR_0014s13020	POPTR_0014s13020 (1:37)	NA	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.211118.1.S1_x_at	B	B2S	POPTR_0001s15665	POPTR_0001s15665 (0:400)//POPTR_0003s02865 (0:385)	scaffold_13:5298548-5298950(+) (9)	NA	NA	NA	NA	NA	LOC_Os01g15730.1	conserved hypothetical protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.211130.1.S1_x_at	B	B1S	POPTR_0009s00270	POPTR_0009s00270 (8:168)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211136.1.S1_s_at	B	B2S	POPTR_0013s07080	POPTR_0013s07080 (6:1569)//POPTR_0013s07090 (3:533)	scaffold_13:5796628-5800775(+) (9)	NA	NA	NA	AT3G03560.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g49960.1	expressed protein	Medtr7g035260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211142.1.S1_at	B	B1S	POPTR_0013s07260	POPTR_0013s07260 (0:339)	NA	NA	A4GYX4	Putative membrane protein ycf1	ATCG01130.1	Ycf1 protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211186.1.S1_at	B	B1S	POPTR_0001s44420	POPTR_0001s44420 (3:173)	scaffold_1:44834736-44836911(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211209.1.S1_at	B	B1S	POPTR_0001s44800	POPTR_0001s44800 (0:1273)	scaffold_1:45194339-45197260(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211209.1.S1_x_at	B	B1S	POPTR_0001s44800	POPTR_0001s44800 (1:1273)	scaffold_1:45194339-45197260(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211211.1.S1_x_at	B	B2S	POPTR_0001s44810	POPTR_0001s44810 (2:109)//POPTR_0001s44800 (0:55)	scaffold_1:45205570-45208195(+) (11)//scaffold_1:45208242-45211131(+) (10)	NA	NA	NA	AT5G18510.1	"Aminotransferase-like, plant mobile domain family protein "	NA	NA	Medtr3g067720.1	Protein of unknown function DUF1723 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211219.1.S1_at	B	B1S	POPTR_0001s44930	POPTR_0001s44930 (8:516)	scaffold_593:3265-3791(+) (9)	NA	Q8W4T9	Taxane 13-alpha-hydroxylase	NA	NA	LOC_Os07g30950.1	"hydroxylase, putative, expressed"	Medtr5g099470.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211230.1.S1_x_at	B	B1S	POPTR_0010s04010	POPTR_0010s04010 (1:176)	NA	NA	B0YPN8	Ribulose bisphosphate carboxylase large chain	ATCG00490.1	ribulose-bisphosphate carboxylases 	LOC_Os10g21268.1	"ribulose bisphosphate carboxylase large chain precursor, putative, expressed"	Medtr7g021740.1	"Ribulose bisphosphate carboxylase, large chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
PtpAffx.211231.1.S1_at	B	B1S	POPTR_0013s10840	POPTR_0013s10840 (3:45)	scaffold_13:11243515-11243603(-) (11)	NA	P28261	Ribulose bisphosphate carboxylase large chain (Fragment)	ATCG00490.1	ribulose-bisphosphate carboxylases 	LOC_Os10g21268.1	"ribulose bisphosphate carboxylase large chain precursor, putative, expressed"	Medtr6g059160.1	"Ribulose bisphosphate carboxylase, large chain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211234.1.S1_x_at	B	B3S	POPTR_0016s11393	POPTR_0009s00560 (0:179)//POPTR_0016s11393 (3:179)//POPTR_0008s21630 (0:167)	scaffold_10:4583584-4584018(-) (10)//scaffold_10:4594348-4594782(+) (10)//scaffold_4:12438201-12438635(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211235.1.S1_s_at	B	B1S	POPTR_0010s04010	POPTR_0010s04010 (6:410)	scaffold_10:4825736-4826247(+) (11)	NA	B0YPN8	Ribulose bisphosphate carboxylase large chain	ATCG00490.1	ribulose-bisphosphate carboxylases 	LOC_Os10g21268.1	"ribulose bisphosphate carboxylase large chain precursor, putative, expressed"	Medtr7g021740.1	"Ribulose bisphosphate carboxylase, large chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
PtpAffx.211236.1.S1_at	B	B1S	POPTR_0019s09670	POPTR_0019s09670 (0:1197)	NA	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.211237.1.S1_at	B	B1S	POPTR_0013s08900	POPTR_0013s08900 (8:2502)	scaffold_13:8408366-8411189(+) (10)	NA	Q9SE83	Dynamin-2A	AT1G10290.1	dynamin-like protein 6 	LOC_Os06g13820.2	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211240.1.S1_a_at	B	B1S	POPTR_0090s00220	POPTR_0090s00220 (8:103)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211249.1.S1_at	B	B1S	POPTR_0013s09100	POPTR_0013s09100 (7:638)	NA	NA	Q96EY9	tRNA-specific adenosine deaminase-like protein 3	AT5G24670.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os09g04210.3	"hydrolase/ zinc ion binding protein, putative, expressed"	Medtr4g159340.1	"CMP/dCMP deaminase, zinc-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211254.1.S1_at	B	B1S	POPTR_0013s09210	POPTR_0013s09210 (8:411)	scaffold_13:8786789-8787332(-) (10)	NA	P40377	DNA replication licensing factor mcm2	AT1G44900.1	minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os11g29380.1	"MCM2 - Putative minichromosome maintenance MCM complex subunit 2, expressed"	Medtr8g137330.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.211267.1.S1_at	B	B1S	POPTR_0013s11240	POPTR_0013s11240 (5:818)	NA	NA	Q91WF7	Polyphosphoinositide phosphatase	AT1G22620.1	Phosphoinositide phosphatase family protein 	LOC_Os08g01750.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211269.1.S1_at	B	B1A	POPTR_0013s09360	POPTR_0013s09360 (0:18)	scaffold_13:9043969-9044016(+) (11)//scaffold_13:9050155-9050202(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211269.1.S1_x_at	B	B1A	POPTR_0013s09360	POPTR_0013s09360 (1:96)	scaffold_13:9043891-9044324(+) (11)//scaffold_13:9050077-9050510(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211275.1.S1_at	B	B1S	POPTR_0013s09430	POPTR_0013s09430 (8:592)	scaffold_13:9201758-9202376(+) (10)	NA	Q7XJN6	Pentatricopeptide repeat-containing protein At2g40720	AT2G40720.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g10800.1	"pentatricopeptide, putative, expressed"	Medtr1g083640.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211311.1.S1_at	B	B1S	POPTR_0013s14070	POPTR_0013s14070 (6:977)	scaffold_13:14402768-14405838(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr4g125590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211313.1.S1_at	B	B1S	POPTR_0013s14140	POPTR_0013s14140 (1:159)	scaffold_13:14456151-14456360(+) (11)	NA	NA	NA	AT1G52855.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g37700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211313.1.S1_x_at	B	B1S	POPTR_0013s14140	POPTR_0013s14140 (5:283)	scaffold_13:14456027-14456360(+) (10)	NA	NA	NA	AT1G52855.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g37700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211330.1.S1_at	B	B1S	POPTR_0013s14540	POPTR_0013s14540 (7:653)	scaffold_13:14691776-14692825(+) (10)	NA	Q9ZR04	Putative cyclin-D6-1	AT4G03270.1	Cyclin D6;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr2g103030.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211333.1.S1_s_at	B	B1S	POPTR_0013s12530	POPTR_0013s12530 (1:153)	NA	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os02g27070.2	"PPR repeat domain containing protein, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211335.1.S1_at	B	B2S	POPTR_0013s14600	POPTR_0191s00230 (0:663)//POPTR_0013s14600 (2:594)	NA	NA	Q5QJC3	5' exonuclease Apollo	AT1G27410.1	DNA repair metallo-beta-lactamase family protein 	LOC_Os01g57440.1	"DNA repair metallo-beta-lactamase, putative, expressed"	Medtr7g099460.1	DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211335.1.S1_x_at	B	B3S	POPTR_0013s14600	POPTR_0013s14600 (2:1596)//POPTR_0191s00230 (0:748)//POPTR_0013s14610 (0:77)	NA	NA	Q5QJC3	5' exonuclease Apollo	AT1G27410.1	DNA repair metallo-beta-lactamase family protein 	LOC_Os01g57440.1	"DNA repair metallo-beta-lactamase, putative, expressed"	Medtr7g099460.1	DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211381.1.S1_x_at	B	B2S	POPTR_0013s15520	POPTR_0013s15520 (5:181)//POPTR_0019s15240 (2:164)	scaffold_13:15489698-15489882(+) (11)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT1G06840.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr3g083770.1	Protein kinase; Adipokinetic hormone 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.211393.1.S1_at	B	B1S	POPTR_0001s04290	POPTR_0001s04290 (0:263)	scaffold_13:15619751-15620044(+) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.211403.1.S1_at	B	B1S	POPTR_0014s00930	POPTR_0014s00930 (8:630)	NA	NA	NA	NA	AT5G67610.1	Uncharacterized conserved protein (DUF2215) 	LOC_Os03g31570.1	"proline-rich family protein, putative, expressed"	Medtr5g015430.1	"protein F1K23.6 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211442.1.S1_at	B	B1S	POPTR_0014s01810	POPTR_0014s01810 (7:2017)	scaffold_14:1681289-1683468(-) (9)	NA	Q54FR4	PXMP2/4 family protein 4	AT5G43140.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os12g32330.1	"peroxisomal membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.211443.1.S1_at	B	B1S	POPTR_0014s01840	POPTR_0014s01840 (5:108)	scaffold_14:1694860-1695295(-) (10)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211479.1.S1_s_at	B	B1A	POPTR_0014s06810	POPTR_0014s06810 (8:175)	scaffold_14:5130125-5130332(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g151050.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211488.1.S1_at	B	B1S	POPTR_0014s06980	POPTR_0014s06980 (7:651)	scaffold_14:5251125-5251996(-) (11)	NA	Q9LE59	"Alpha-1,4-galacturonosyltransferase 1"	AT3G61130.1	galacturonosyltransferase 1 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211526.1.S1_at	B	B1S	POPTR_0014s07730	POPTR_0014s07730 (3:362)	NA	NA	NA	NA	AT3G54970.2	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211526.1.S1_x_at	B	B1S	POPTR_0014s07730	POPTR_0014s07730 (5:362)	NA	NA	NA	NA	AT3G54970.2	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211539.1.S1_at	B	B1S	POPTR_0014s07980	POPTR_0014s07980 (8:833)	NA	NA	NA	NA	AT4G00467.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g44560.1	"C2 domain containing protein, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211580.1.S1_at	B	B1S	POPTR_0014s08790	POPTR_0014s08790 (5:174)	scaffold_14:6509090-6509662(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211592.1.S1_at	B	B1S	POPTR_0014s09000	POPTR_0014s09000 (2:212)	NA	NA	Q921I9	Exosome complex exonuclease RRP41	AT3G61620.2	3'-5'-exoribonuclease family protein 	LOC_Os09g07820.2	"exosome complex exonuclease, putative, expressed"	Medtr7g143590.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.211593.1.S1_at	B	B1S	POPTR_0014s09010	POPTR_0014s09010 (8:31)	NA	NA	NA	NA	AT2G46300.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g39290.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr7g143600.1	Harpin-induced 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211621.1.S1_at	B	B1S	POPTR_0014s09560	POPTR_0014s09560 (8:992)	NA	NA	Q9C5W9	Auxin response factor 18	AT3G61830.1	auxin response factor 18 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr4g019570.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.211622.1.S1_at	B	B2S	POPTR_0014s09600	POPTR_0002s17430 (0:530)//POPTR_0014s09600 (8:479)	NA	NA	NA	NA	AT1G72000.1	Plant neutral invertase family protein 	LOC_Os02g34560.2	"plant neutral invertase domain containing protein, expressed"	Medtr3g163240.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211659.1.S1_at	B	B1S	POPTR_0014s10320	POPTR_0014s10320 (7:179)	NA	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.211668.1.S1_at	B	B1S	POPTR_0014s10630	POPTR_0014s10630 (8:2587)	scaffold_14:7912924-7916539(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211694.1.S1_at	B	B1S	POPTR_0014s11150	POPTR_0014s11150 (8:665)	scaffold_14:8302383-8307110(-) (10)	NA	Q6NLP7	GDSL esterase/lipase At3g62280	AT3G62280.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g22660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	AC235094_3.1	"Lipolytic enzyme, G-D-S-L AC235094.1 17941-22012 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211697.1.S1_at	B	B1S	POPTR_0014s11190	POPTR_0014s11190 (8:520)	scaffold_14:8322328-8322917(+) (11)	NA	Q680H3	Pentatricopeptide repeat-containing protein At2g25580	AT2G25580.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g53610.1	"selenium-binding protein, related, putative, expressed"	Medtr5g045520.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211713.1.S1_at	B	B1A	POPTR_0014s11450	POPTR_0014s11450 (5:187)	scaffold_14:8508888-8509317(+) (11)	NA	P0C6U5	Replicase polyprotein 1a	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211725.1.S1_at	B	B3S	POPTR_0014s11660	POPTR_0008s19530 (4:186)//POPTR_0014s11690 (8:185)//POPTR_0014s11660 (8:185)	NA	NA	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.2	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.21175.1.S1_at	B	B1S	POPTR_0005s19650	POPTR_0005s19650 (4:149)	NA	NA	NA	NA	AT1G09700.1	dsRNA-binding domain-like superfamily protein 	LOC_Os11g01869.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g149610.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.211753.1.S1_at	B	B1A	POPTR_0014s12190	POPTR_0014s12190 (5:142)	scaffold_14:9016533-9016847(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211767.1.S1_at	B	B1S	POPTR_0014s12660	POPTR_0014s12660 (5:842)	NA	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g55960.1	"pentatricopeptide, putative"	Medtr7g130260.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211773.1.S1_at	B	B1S	POPTR_0014s12780	POPTR_0014s12780 (4:195)	NA	NA	NA	NA	AT4G03200.1	catalytics 	NA	NA	Medtr7g130030.1	"Glycoside transferase, six-hairpin; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211775.1.S1_at	B	B1S	POPTR_0014s12900	POPTR_0014s12900 (3:73)	scaffold_14:9504672-9505251(+) (9)	NA	O82256	Zinc finger protein CONSTANS-LIKE 13	AT2G47890.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g19444.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g129880.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.211794.1.S1_at	B	B1S	POPTR_0014s13230	POPTR_0014s13230 (8:1296)	scaffold_14:9755302-9756573(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211800.1.S1_at	B	B1S	POPTR_0014s13340	POPTR_0014s13340 (2:58)	scaffold_14:9818264-9821371(-) (11)	NA	NA	NA	AT2G48060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os01g29220.1	expressed protein	Medtr7g139720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211846.1.S1_at	B	B1S	POPTR_0014s14540	POPTR_0014s14540 (8:263)	scaffold_14:10649899-10650429(+) (11)	NA	NA	NA	AT1G05510.1	Protein of unknown function (DUF1264) 	LOC_Os05g49440.2	"DUF1264 domain containing protein, putative, expressed"	Medtr3g104290.1	Protein of unknown function DUF1264 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211858.1.S1_at	B	B1S	POPTR_0014s14890	POPTR_0014s14890 (7:1688)	scaffold_14:10926771-10928827(-) (10)	NA	NA	NA	AT1G05790.1	lipase class 3 family protein 	LOC_Os04g41200.1	"lipase, putative, expressed"	Medtr1g147130.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211880.1.S1_at	B	B1S	POPTR_0014s15480	POPTR_0014s15480 (5:66)	scaffold_14:11534749-11534883(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g110310.1	"Actin-binding, actinin-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211896.1.S1_at	B	B2S	POPTR_0014s15965	POPTR_1178s00200 (7:900)//POPTR_0014s15965 (7:898)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211903.1.S1_at	B	B1S	POPTR_0014s16130	POPTR_0014s16130 (8:727)	NA	NA	Q5XIU1	Ankyrin repeat and BTB/POZ domain-containing protein 1	AT2G04740.1	ankyrin repeat family protein 	LOC_Os06g21330.1	"ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed"	Medtr3g106440.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.211906.1.S1_at	B	B1S	POPTR_0014s16170	POPTR_0014s16170 (6:666)	scaffold_14:12253059-12254005(+) (9)	NA	Q8L7H1	F-box/LRR-repeat protein At4g14103	AT4G14103.2	F-box/RNI-like superfamily protein 	NA	NA	Medtr5g048150.1	Cyclin-like F-box; FBD; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211910.1.S1_at	B	B1S	POPTR_0014s16220	POPTR_0014s16220 (7:502)	NA	NA	Q9SI37	WRKY transcription factor 1	AT2G04880.2	zinc-dependent activator protein-1 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.211910.1.S1_x_at	B	B1S	POPTR_0014s16220	POPTR_0014s16220 (8:571)	NA	NA	Q9SI37	WRKY transcription factor 1	AT2G04880.2	zinc-dependent activator protein-1 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.211943.1.S1_x_at	B	B3S	POPTR_0009s03110	POPTR_0009s03110 (6:128)//POPTR_0006s05790 (0:128)//POPTR_0785s00200 (0:18)	NA	NA	O23826	125 kDa kinesin-related protein	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.211947.1.S1_at	B	B1S	POPTR_0014s16980	POPTR_0014s16980 (8:452)	NA	NA	Q6F4F5	Cytochrome P450 724B1	AT3G50660.1	Cytochrome P450 superfamily protein 	LOC_Os04g39430.1	"cytochrome P450, putative, expressed"	Medtr7g032660.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.211953.1.S1_at	B	B1A	POPTR_0014s17110	POPTR_0014s17110 (0:49)	scaffold_14:13264231-13264615(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211962.1.S1_s_at	B	B1S	POPTR_0014s17300	POPTR_0014s17300 (7:374)	scaffold_14:13432906-13433386(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211980.1.S1_at	B	B1S	POPTR_0014s17720	POPTR_0014s17720 (6:539)	scaffold_14:13977069-13977649(-) (11)	NA	O23051	Ent-kaurenoic acid oxidase 1	AT1G05160.1	"cytochrome P450, family 88, subfamily A, polypeptide 3 "	LOC_Os06g02019.1	"cytochrome P450, putative, expressed"	Medtr5g014420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.212011.1.S1_at	B	B1S	POPTR_0014s18930	POPTR_0014s18930 (5:158)	NA	NA	Q6DCY9	HAUS augmin-like complex subunit 3	AT5G48520.1	unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; Bacteria - 41; Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). 	LOC_Os06g08730.1	expressed protein	Medtr1g046340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212014.1.S1_x_at	B	B5S	POPTR_0006s11160	POPTR_0005s16475 (2:1612)//POPTR_0010s09045 (0:148)//POPTR_0001s21035 (0:148)//POPTR_0006s11160 (4:148)//POPTR_0013s09440 (0:148)	NA	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT1G22950.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212050.1.S1_at	B	B1S	POPTR_0002s20860	POPTR_0002s20860 (4:575)	scaffold_2:17101294-17102252(+) (9)	NA	NA	NA	NA	NA	LOC_Os07g45110.1	"transposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212063.1.S1_at	B	B2S	POPTR_0002s22910	POPTR_0020s00480 (5:938)//POPTR_0002s22910 (5:895)	NA	NA	NA	NA	AT2G48060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os01g29230.1	expressed protein	Medtr1g111530.1	"Fibronectin, type III-like fold, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212064.1.S1_x_at	B	B1S	POPTR_0020s00410	POPTR_0020s00410 (8:249)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212079.1.S1_s_at	B	B1A	POPTR_0001s12730	POPTR_0001s12730 (0:310)	scaffold_19:803536-803850(-) (11)	NA	Q9FTZ2	"Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase"	AT1G20050.1	"C-8,7 sterol isomerase "	LOC_Os01g01369.1	"3-beta-hydroxysteroid-Delta-isomerase, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0016125|sterol metabolic process||GO:0006629|lipid metabolic process	GO:0047750|cholestenol delta-isomerase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.212090.1.S1_at	B	B1S	POPTR_0019s00280	POPTR_0019s00280 (5:465)	NA	NA	NA	NA	NA	NA	LOC_Os06g21390.3	"Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed"	Medtr3g030260.1	"Zinc finger, CCCH-type; Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212093.1.S1_at	B	B2S	POPTR_0019s00320	POPTR_0710s00200 (7:331)//POPTR_0019s00320 (8:330)	scaffold_19:102495-102885(-) (10)//scaffold_710:6810-7201(-) (9)	NA	NA	NA	AT1G22910.3	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g041420.2	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212110.1.S1_at	B	B1S	POPTR_0019s00710	POPTR_0019s00710 (4:302)	scaffold_19:477088-477675(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212113.1.S1_x_at	B	B1S	POPTR_0019s00770	POPTR_0019s00770 (6:242)	scaffold_19:510439-510716(-) (9)	NA	Q40901	Defensin-like protein	AT2G02130.1	low-molecular-weight cysteine-rich 68 	LOC_Os03g03810.1	"DEF8 - Defensin and Defensin-like DEFL family, expressed"	Medtr8g090060.1	Knottin 	GO:0006952|defense response	NA	NA
PtpAffx.212116.1.S1_at	B	B1S	POPTR_0019s00820	POPTR_0019s00820 (2:140)	scaffold_19:546002-553034(-) (11)	NA	NA	NA	AT5G63640.1	ENTH/VHS/GAT family protein 	LOC_Os08g01740.2	"VHS and GAT domain containing protein, expressed"	Medtr4g144470.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.212139.1.S1_at	B	B1S	POPTR_0019s03450	POPTR_0019s03450 (3:142)	scaffold_19:3511067-3511604(-) (11)	NA	P27502	Polyprotein P3	NA	NA	LOC_Os11g17260.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212144.1.S1_at	B	B1S	POPTR_0019s03650	POPTR_0019s03650 (5:716)	NA	NA	Q9USQ7	Meiotically up-regulated gene 71 protein	AT3G04480.1	endoribonucleases 	LOC_Os02g56565.1	"endoribonuclease, putative, expressed"	Medtr7g135060.1	Endoribonuclease L-PSP; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212176.1.S1_x_at	B	B4S	POPTR_0016s11393	POPTR_0009s00560 (4:220)//POPTR_0007s08675 (6:220)//POPTR_0016s11393 (7:220)//POPTR_0008s21630 (0:214)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212177.1.S1_x_at	B	B1S	POPTR_0007s08900	POPTR_0007s08900 (0:446)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.212182.1.S1_at	B	B1S	POPTR_0019s07220	POPTR_0019s07220 (6:1973)	scaffold_19:8161633-8163873(-) (9)	NA	Q9LX65	V-type proton ATPase subunit H	AT3G42050.1	vacuolar ATP synthase subunit H family protein 	LOC_Os07g36470.1	"vacuolar ATP synthase subunit H, putative, expressed"	Medtr8g093980.1	"Cytochrome b5; V-ATPase subunit H, C-terminal "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0000221|""vacuolar proton-transporting V-type ATPase, V1 domain"""
PtpAffx.212187.1.S1_at	B	B1S	POPTR_0019s07500	POPTR_0019s07500 (3:1299)	scaffold_19:8524054-8527712(-) (9)	NA	Q39238	Serine/threonine-protein kinase TOUSLED	AT5G20930.1	Protein kinase superfamily protein 	LOC_Os03g53880.3	"serine/threonine-protein kinase TOUSLED, putative, expressed"	Medtr5g094010.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212209.1.S1_at	B	B1S	POPTR_0019s04820	POPTR_0019s04820 (8:58)	NA	NA	Q9SAK5	Myb family transcription factor APL	AT3G04030.3	Homeodomain-like superfamily protein 	LOC_Os03g20900.1	"Myb transcription factor, putative, expressed"	Medtr2g107820.1	"Peptidase M22, glycoprotease; Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212221.1.S1_at	B	B1S	POPTR_0019s05040	POPTR_0019s05040 (3:156)	scaffold_19:5269023-5269267(+) (11)	NA	Q8VZT0	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1	AT3G03920.1	"H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein "	LOC_Os11g37080.1	"h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0019843|rRNA binding	GO:0005732|small nucleolar ribonucleoprotein complex
PtpAffx.212248.1.S1_at	B	B1S	POPTR_0019s05710	POPTR_0019s05710 (2:115)	scaffold_19:6064349-6064550(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212258.1.S1_s_at	B	B1A	POPTR_0044s00260	POPTR_0044s00260 (0:910)	scaffold_19:6328527-6329366(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212260.1.S1_at	B	B1S	POPTR_0019s05930	POPTR_0019s05930 (7:113)	scaffold_19:6352515-6352699(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212260.1.S1_x_at	B	B1S	POPTR_0019s05930	POPTR_0019s05930 (5:113)	scaffold_19:6352515-6352826(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212270.1.S1_s_at	B	B1A	POPTR_0019s06160	POPTR_0019s06160 (6:249)	scaffold_19:6725972-6726367(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212271.1.S1_at	B	B1S	POPTR_0019s06160	POPTR_0019s06160 (6:177)	scaffold_19:6727524-6727795(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212282.1.S1_at	B	B1S	POPTR_0019s08110	POPTR_0019s08110 (4:102)	NA	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.212282.1.S1_x_at	B	B1S	POPTR_0019s08110	POPTR_0019s08110 (5:511)	NA	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.212309.1.S1_x_at	B	B5S	POPTR_0019s08790	POPTR_0019s08820 (5:1904)//POPTR_0019s08910 (5:1902)//POPTR_1470s00200 (5:1841)//POPTR_0019s08790 (5:1779)//POPTR_0019s08840 (2:1172)	NA	NA	Q149N8	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076790.1	"Helicase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212317.1.S1_at	B	B1S	POPTR_0019s09910	POPTR_0019s09910 (2:77)	scaffold_19:11534615-11534789(+) (11)	NA	Q9S7A3	Molybdopterin synthase sulfur carrier subunit	AT4G10100.3	"co-factor for nitrate, reductase and xanthine dehydrogenase 7 "	LOC_Os02g35200.1	"VP15, putative, expressed"	Medtr3g009960.1	ThiamineS; 2Fe-2S Ferredoxin-like fold 	GO:0006790|sulfur metabolic process	NA	NA
PtpAffx.212329.1.S1_at	B	B1A	POPTR_0019s10370	POPTR_0019s10370 (4:246)	scaffold_19:11929992-11930481(+) (11)	NA	NA	NA	AT1G71480.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os09g09320.1	"nuclear transport factor, putative, expressed"	NA	NA	GO:0006810|transport	NA	GO:0005622|intracellular
PtpAffx.212337.1.S1_at	B	B1S	POPTR_0019s10450	POPTR_0019s10450 (8:898)	scaffold_19:12024942-12025883(-) (10)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G71140.1	MATE efflux family protein 	LOC_Os01g49120.1	"MATE efflux family protein, putative, expressed"	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.212346.1.S1_at	B	B1S	POPTR_0019s10550	POPTR_0019s10550 (8:253)	NA	NA	NA	NA	AT2G47010.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19030.1	expressed protein	Medtr1g105900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212361.1.S1_at	B	B1S	POPTR_0019s10950	POPTR_0019s10950 (7:358)	scaffold_19:12416510-12416977(-) (11)	NA	Q9LEQ3	Putative cyclic nucleotide-gated ion channel 18	AT5G14870.1	cyclic nucleotide-gated channel 18 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212371.1.S1_at	B	B1S	POPTR_0019s11130	POPTR_0019s11130 (5:419)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212375.1.S1_at	B	B2A	POPTR_0019s11220	POPTR_0019s11220 (4:280)//POPTR_0019s11230 (4:264)	scaffold_19:12581637-12582808(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr4g121070.1	Cell surface antigen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212385.1.S1_at	B	B1S	POPTR_0019s11400	POPTR_0019s11400 (8:736)	scaffold_19:12702002-12702809(+) (11)	NA	Q43046	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os04g09654.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.212395.1.S1_at	B	B1S	POPTR_0019s11590	POPTR_0019s11590 (8:2166)	NA	NA	P08575	Receptor-type tyrosine-protein phosphatase C	AT1G71860.3	protein tyrosine phosphatase 1 	LOC_Os12g07590.2	"Protein-tyrosine phosphatase domain containing protein, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0004725|protein tyrosine phosphatase activity	NA
PtpAffx.212398.1.S1_at	B	B1S	POPTR_0019s11650	POPTR_0019s11650 (8:537)	scaffold_19:12901251-12901539(+) (9)	NA	NA	NA	NA	NA	LOC_Os12g04660.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130170.2	"Site-specific DNA-methyltransferase (cytosine-N4-specific); Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212435.1.S1_at	B	B1S	POPTR_0001s18870	POPTR_0001s18870 (5:533)	NA	NA	NA	NA	AT5G22070.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os03g44580.3	"DNA binding protein, putative, expressed"	Medtr1g060360.1	"Protein of unknown function DUF266, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212438.1.S1_x_at	B	B6S	POPTR_0019s12620	POPTR_0019s12620 (4:1353)//POPTR_0019s12650 (2:393)//POPTR_2085s00200 (2:393)//POPTR_0001s06890 (0:381)//POPTR_0013s12270 (2:370)//POPTR_0019s12630 (1:186)	scaffold_19:13634959-13636402(+) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr8g148310.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212461.1.S1_s_at	B	B1S	POPTR_0019s15130	POPTR_0019s15130 (4:128)	scaffold_19:15730418-15730954(+) (10)	NA	Q6CIV2	ATP-dependent RNA helicase DBP2	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g19530.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.212474.1.S1_at	B	B1S	POPTR_0019s14880	POPTR_0019s14880 (7:1793)	scaffold_19:15535262-15537276(+) (11)	NA	NA	NA	AT2G30380.1	Plant protein of unknown function (DUF641) 	LOC_Os10g23220.2	"GIL1, putative, expressed"	Medtr5g083010.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212510.1.S1_at	B	B1S	POPTR_0019s14060	POPTR_0019s14060 (0:201)	NA	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT1G03940.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g57480.1	"transferase family protein, putative, expressed"	Medtr2g102840.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.212530.1.S1_at	B	B1A	POPTR_0015s00460	POPTR_0015s00460 (4:395)	scaffold_15:256331-256820(+) (10)	NA	NA	NA	AT5G24460.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os06g49780.1	expressed protein	Medtr3g122610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212547.1.S1_at	B	B1S	POPTR_0015s00870	POPTR_0015s00870 (8:151)	scaffold_15:508848-509008(-) (11)	NA	Q9FGR0	Cleavage and polyadenylation specificity factor subunit 1	AT5G51660.1	cleavage and polyadenylation specificity factor 160 	LOC_Os04g18010.1	"cleavage and polyadenylation specificity factor subunit 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212564.1.S1_at	B	B1S	POPTR_0015s01240	POPTR_0015s01240 (8:628)	scaffold_15:779876-780639(+) (10)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT5G24318.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os07g13580.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr1g008920.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.21257.1.S1_at	B	B1S	POPTR_0006s29290	POPTR_0006s29290 (7:495)	scaffold_6:26709396-26710009(-) (11)	NA	NA	NA	AT2G24395.1	chaperone protein dnaJ-related 	LOC_Os08g40919.2	expressed protein	Medtr3g133030.1	"chaperone protein dnaJ-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212577.1.S1_at	B	B1S	POPTR_0015s01430	POPTR_0015s01430 (6:672)	NA	NA	NA	NA	AT5G53020.1	Ribonuclease P protein subunit P38-related 	LOC_Os01g36970.1	expressed protein	Medtr3g123740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212596.1.S1_at	B	B3S	POPTR_0015s01770	POPTR_0248s00210 (0:388)//POPTR_0248s00220 (0:365)//POPTR_0015s01770 (8:254)	scaffold_248:27340-32124(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.212605.1.S1_at	B	B4S	POPTR_0015s01850	POPTR_0015s01850 (7:2327)//POPTR_0015s01860 (4:2261)//POPTR_0015s01910 (4:1666)//POPTR_0492s00210 (3:1630)	NA	NA	NA	NA	AT5G53450.1	OBP3-responsive gene 1 	LOC_Os01g46720.1	expressed protein	Medtr3g124180.1	"Proteinase inhibitor I4, serpin; Protein kinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212616.1.S1_at	B	B1S	POPTR_0015s02050	POPTR_0015s02050 (6:434)	scaffold_15:1404211-1404714(-) (9)	NA	Q9FID6	Probable receptor-like protein kinase At5g39020	AT5G39020.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g02460.1	"receptor kinase LRK10, putative"	Medtr1g034830.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212634.1.S1_x_at	B	B2S	POPTR_0015s02270	POPTR_1647s00200 (4:155)//POPTR_0015s02270 (8:155)	scaffold_15:6463406-6463561(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212644.1.S1_at	B	B1S	POPTR_0015s03390	POPTR_0015s03390 (8:522)	NA	NA	NA	NA	AT1G61415.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g19470.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212656.1.S1_at	B	B1S	POPTR_0015s03570	POPTR_0015s03570 (7:506)	NA	NA	NA	NA	AT3G42660.1	transducin family protein / WD-40 repeat family protein 	LOC_Os09g06560.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g074310.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212661.1.S1_at	B	B1S	POPTR_0225s00200	POPTR_0225s00200 (5:114)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212683.1.S1_at	B	B1S	POPTR_0015s03920	POPTR_0015s03920 (6:437)	NA	NA	Q9WXM1	L-Ala-D/L-Glu epimerase	AT3G18270.1	"cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene "	LOC_Os01g04630.1	"muconate cycloisomerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212683.1.S1_x_at	B	B1S	POPTR_0015s03920	POPTR_0015s03920 (7:562)	NA	NA	Q9WXM1	L-Ala-D/L-Glu epimerase	AT3G18270.1	"cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene "	LOC_Os01g04630.1	"muconate cycloisomerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212685.1.S1_at	B	B1S	POPTR_0015s03980	POPTR_0015s03980 (8:456)	NA	NA	NA	NA	AT1G15060.1	"Uncharacterised conserved protein UCP031088, alpha/beta hydrolase "	LOC_Os01g49760.1	expressed protein	Medtr6g086800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212698.1.S1_at	B	B1S	POPTR_0015s04290	POPTR_0015s04290 (2:339)	NA	NA	P90587	66 kDa stress protein	AT3G18060.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g03510.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g155430.1	"66 kDa stress protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212703.1.S1_at	B	B1S	POPTR_0015s04460	POPTR_0015s04460 (8:1617)	scaffold_15:4599866-4601513(-) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT5G15310.1	myb domain protein 16 	LOC_Os04g38740.1	"MYB family transcription factor, putative, expressed"	Medtr4g124700.1	N-6 Adenine-specific DNA methylase; Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212711.1.S1_at	B	B2S	POPTR_0015s04620	POPTR_0015s04610 (3:1731)//POPTR_0015s04620 (8:274)	scaffold_15:4811954-4819045(-) (11)	NA	Q7ZUC7	Prostaglandin E synthase 2	AT5G42150.1	Glutathione S-transferase family protein 	LOC_Os04g17050.1	"glutaredoxin family protein, expressed"	Medtr6g083520.1	"Glutathione S-transferase, C-terminal-like; Thioredoxin fold "	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.212718.1.S1_at	B	B1S	POPTR_0015s04720	POPTR_0015s04720 (8:1711)	scaffold_15:4942383-4944094(-) (9)	NA	Q46888	Uncharacterized oxidoreductase ygbJ	AT1G18270.2	ketose-bisphosphate aldolase class-II family protein 	LOC_Os06g14740.1	"NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed"	Medtr6g083360.1	"Ketose-bisphosphate aldolase, class-II; 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal-like; ; "	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0008270|zinc ion binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity||GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.212732.1.S1_at	B	B1S	POPTR_0015s07750	POPTR_0015s07750 (8:719)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212755.1.S1_at	B	B1S	POPTR_0015s08210	POPTR_0015s08210 (8:302)	scaffold_15:9477903-9480869(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212756.1.S1_at	B	B1S	POPTR_0015s08230	POPTR_0015s08230 (8:1396)	NA	NA	NA	NA	AT5G50110.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	Medtr8g125150.1	Glucose inhibited division protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212786.1.S1_at	B	B1S	POPTR_0015s08990	POPTR_0015s08990 (8:1683)	scaffold_15:10327466-10329264(+) (10)	NA	Q02166	"Anthranilate phosphoribosyltransferase, chloroplastic"	AT5G17990.1	tryptophan biosynthesis 1 	LOC_Os03g03450.2	"anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed"	Medtr3g114190.1	"Glycosyl transferase, family 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212803.1.S1_at	B	B1S	POPTR_0015s09380	POPTR_0015s09380 (3:48)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212824.1.S1_at	B	B1S	POPTR_0015s09850	POPTR_0015s09850 (8:439)	scaffold_15:10942521-10943079(-) (11)	NA	Q9FMY1	Cytochrome P450 86B1	AT2G23180.1	"cytochrome P450, family 96, subfamily A, polypeptide 1 "	LOC_Os01g08810.1	"cytochrome P450, putative, expressed"	Medtr4g137010.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212827.1.S1_at	B	B1S	POPTR_0015s09960	POPTR_0015s09960 (6:353)	NA	NA	Q9STL8	Probable Ufm1-specific protease	AT3G48380.1	"Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 "	LOC_Os12g18760.2	"peptidase family C78 domain containing protein, expressed"	AC235753_17.1	Protein of unknown function DUF1671 AC235753.1 103660-96079 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212827.1.S1_x_at	B	B1S	POPTR_0015s09960	POPTR_0015s09960 (8:963)	NA	NA	Q9STL8	Probable Ufm1-specific protease	AT3G48380.1	"Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 "	LOC_Os12g18760.2	"peptidase family C78 domain containing protein, expressed"	AC235753_17.1	Protein of unknown function DUF1671 AC235753.1 103660-96079 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212834.1.S1_at	B	B1A	POPTR_0015s10140	POPTR_0015s10140 (2:33)	scaffold_15:11166029-11166320(-) (9)	NA	Q9STM6	GDSL esterase/lipase At3g48460	AT3G48460.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g62740.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g109970.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.212854.1.S1_at	B	B1S	POPTR_0015s10430	POPTR_0015s10430 (7:1135)	scaffold_15:11365796-11370565(-) (10)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117330.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.212896.1.S1_at	B	B1S	POPTR_0015s11280	POPTR_0015s11280 (3:1953)	NA	NA	Q7TNV0	Protein DEK	AT3G48710.1	DEK domain-containing chromatin associated protein 	LOC_Os01g70020.1	"DEK C terminal domain containing protein, expressed"	Medtr3g150850.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212896.1.S1_x_at	B	B1S	POPTR_0015s11280	POPTR_0015s11280 (5:3389)	NA	NA	Q7TNV0	Protein DEK	AT3G48710.1	DEK domain-containing chromatin associated protein 	LOC_Os01g70020.1	"DEK C terminal domain containing protein, expressed"	Medtr3g150850.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212904.1.S1_at	B	B1S	POPTR_0015s11410	POPTR_0015s11410 (0:23)	scaffold_15:11980684-11980979(-) (11)	NA	Q9XGY4	Mitochondrial import inner membrane translocase subunit Tim8	AT5G50810.1	translocase inner membrane subunit 8 	LOC_Os08g42380.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr3g151020.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
PtpAffx.212918.1.S1_at	B	B1S	POPTR_0015s11540	POPTR_0015s11540 (6:33)	scaffold_15:12115629-12115666(-) (9)	NA	Q8GTR4	"Pullulanase 1, chloroplastic"	AT5G04360.1	limit dextrinase 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212921.1.S1_at	B	B1S	POPTR_0015s11590	POPTR_0015s11590 (8:2004)	NA	NA	NA	NA	AT3G48860.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212955.1.S1_x_at	B	B17S	POPTR_0015s12510	POPTR_0015s07020 (0:143)//POPTR_0296s00200 (0:143)//POPTR_0015s15930 (0:143)//POPTR_0015s15870 (0:143)//POPTR_0015s12520 (0:143)//POPTR_0015s11860 (0:143)//POPTR_0015s12510 (6:143)//POPTR_0015s15920 (0:143)//POPTR_0015s15910 (0:143)//POPTR_0015s11870 (0:143)//POPTR_0015s12560 (0:143)//POPTR_0015s12630 (0:139)//POPTR_0015s11900 (0:136)//POPTR_0088s00240 (0:128)//POPTR_0088s00200 (0:128)//POPTR_0015s12600 (0:128)//POPTR_0088s00210 (0:128)	NA	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212960.1.S1_x_at	B	B4S	POPTR_0017s01550	POPTR_0017s01600 (6:217)//POPTR_0017s01550 (7:212)//POPTR_0017s01620 (1:193)//POPTR_0017s01590 (1:193)	NA	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr7g088340.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.212964.1.S1_at	B	B1S	POPTR_0015s15890	POPTR_0015s15890 (0:196)	NA	NA	NA	NA	AT4G19080.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212966.1.S1_at	B	B1S	POPTR_0015s12610	POPTR_0015s12610 (0:794)	scaffold_15:15085400-15085457(+) (9)	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212969.1.S1_at	B	B1S	POPTR_0015s15810	POPTR_0015s15810 (7:501)	scaffold_15:15014783-15015368(-) (10)	NA	NA	NA	AT4G19650.1	Mitochondrial transcription termination factor family protein 	LOC_Os08g40630.2	"mTERF domain containing protein, expressed"	Medtr5g092160.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212970.1.S1_at	B	B2S	POPTR_0015s15800	POPTR_0015s15800 (4:479)//POPTR_0012s11900 (0:255)	NA	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.212970.1.S1_x_at	B	B2S	POPTR_0015s15800	POPTR_0015s15800 (8:479)//POPTR_0012s11900 (0:255)	NA	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.212992.1.S1_at	B	B1S	POPTR_0015s15660	POPTR_0015s15660 (3:219)	scaffold_1013:6998-7219(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212994.1.S1_at	B	B1S	POPTR_0015s15490	POPTR_0015s15490 (7:602)	NA	NA	O81865	Protein PHLOEM PROTEIN 2-LIKE A1	AT4G19840.1	phloem protein 2-A1 	LOC_Os01g06500.1	"PHLOEM 2-LIKE A5, putative, expressed"	Medtr4g114610.1	"F-box protein PP2-B10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2130.2.A1_at	B	B1S	POPTR_0010s19080	POPTR_0010s19080 (7:653)	NA	NA	Q9FLB5	Laccase-12	AT5G05390.1	laccase 12 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr3g097050.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.213007.1.S1_at	B	B1S	POPTR_0015s15140	POPTR_0015s15140 (8:970)	NA	NA	Q5S2C4	Protein NAP1	AT2G35110.2	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213011.1.S1_at	B	B1S	POPTR_0015s14990	POPTR_0015s14990 (5:808)	NA	NA	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os03g20470.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.213016.1.S1_at	B	B3S	POPTR_0015s14890	POPTR_0015s14910 (0:5522)//POPTR_0015s14890 (7:820)//POPTR_0015s14920 (2:627)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213030.1.S1_at	B	B1S	POPTR_0015s14420	POPTR_0015s14420 (1:42)	NA	NA	NA	NA	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	Medtr8g090220.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213040.1.S1_at	B	B1S	POPTR_0015s14100	POPTR_0015s14100 (5:2283)	scaffold_15:13824956-13830979(-) (11)	NA	Q9FLI3	Probable protein phosphatase 2C 75	AT5G51760.1	Protein phosphatase 2C family protein 	LOC_Os01g62760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213053.1.S1_at	B	B1S	POPTR_0015s13850	POPTR_0015s13850 (6:1313)	NA	NA	NA	NA	AT5G52030.2	TraB family protein 	LOC_Os08g43230.1	"TraB family protein, putative, expressed"	Medtr1g129440.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213056.1.S1_at	B	B1S	POPTR_0015s13780	POPTR_0015s13780 (6:156)	NA	NA	NA	NA	AT1G53645.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os06g45390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213101.1.S1_at	B	B1A	POPTR_0015s12870	POPTR_0015s12870 (3:64)	scaffold_15:13067081-13067468(-) (11)	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G63700.1	Protein kinase superfamily protein 	LOC_Os04g47240.3	"STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g126720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.213115.1.S1_at	B	B1S	POPTR_0016s00720	POPTR_0016s00720 (8:528)	NA	NA	Q5F3U9	Sister chromatid cohesion protein PDS5 homolog B	AT5G47690.2	binding 	LOC_Os06g17840.1	expressed protein	Medtr2g032740.1	"HEAT, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213128.1.S1_at	B	B1S	POPTR_0016s01030	POPTR_0016s01030 (5:124)	scaffold_16:409901-410193(-) (9)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT5G35740.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os07g32600.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g105130.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213149.1.S1_at	B	B2S	POPTR_0016s01400	POPTR_0016s01400 (7:540)//POPTR_0006s01360 (1:529)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213154.1.S1_at	B	B1S	POPTR_0016s01540	POPTR_0016s01540 (6:232)	scaffold_16:699991-700632(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213159.1.S1_at	B	B1S	POPTR_0016s01670	POPTR_0016s01670 (8:342)	scaffold_16:759225-759564(-) (9)	NA	NA	NA	AT1G12050.1	"fumarylacetoacetase, putative "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213163.1.S1_at	B	B1A	POPTR_0016s01720	POPTR_0016s01720 (8:1234)	NA	NA	P14009	14 kDa proline-rich protein DC2.15	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g52250.1	"LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213165.1.S1_at	B	B1S	POPTR_0016s01760	POPTR_0016s01760 (8:589)	NA	NA	Q9LIE7	"Pentatricopeptide repeat-containing protein At3g22150, chloroplastic"	AT3G22150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g51350.1	"pentatricopeptide, putative, expressed"	Medtr5g106500.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213171.1.S1_at	B	B1S	POPTR_0016s01960	POPTR_0016s01960 (4:408)	NA	NA	Q9SWG3	Protein FAR-RED IMPAIRED RESPONSE 1	AT4G15090.1	FRS (FAR1 Related Sequences) transcription factor family 	LOC_Os11g45530.1	"transposon protein, putative, unclassified"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.213184.1.S1_at	B	B2S	POPTR_0016s02240	POPTR_0016s02240 (8:916)//POPTR_0016s02290 (2:350)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.2	UDP-glucosyl transferase 85A2 	LOC_Os02g51930.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr6g014640.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213189.1.S1_at	B	B1S	POPTR_0016s02400	POPTR_0016s02400 (8:1935)	scaffold_16:1183485-1185420(+) (9)	NA	Q12010	Uncharacterized membrane protein YOL092W	AT2G41050.1	PQ-loop repeat family protein / transmembrane family protein 	LOC_Os01g16170.2	"PQ loop repeat domain containing protein, expressed"	Medtr6g017950.1	Cystinosin/ERS1p repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213198.1.S1_at	B	B1S	POPTR_0016s02630	POPTR_0016s02630 (0:2)	NA	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213198.1.S1_x_at	B	B1S	POPTR_0016s02630	POPTR_0016s02630 (1:32)	NA	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213199.1.S1_at	B	B2S	POPTR_0016s02620	POPTR_0016s02620 (3:256)//POPTR_0016s02640 (0:6)	scaffold_16:1298452-1305960(+) (9)	NA	Q9SG80	Alpha-L-arabinofuranosidase 1	AT3G10740.1	alpha-L-arabinofuranosidase 1 	LOC_Os12g03470.1	"alpha-N-arabinofuranosidase A, putative, expressed"	Medtr7g105210.1	"alpha-L-arabinofuranosidase protein, putative "	GO:0044262|cellular carbohydrate metabolic process||GO:0046373|L-arabinose metabolic process||GO:0044281|small molecule metabolic process	GO:0046556|alpha-N-arabinofuranosidase activity	NA
PtpAffx.213201.1.S1_s_at	B	B2S	POPTR_0016s02720	POPTR_0016s02720 (7:448)//POPTR_0016s02670 (0:392)	NA	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213223.1.S1_at	B	B1S	POPTR_0016s03100	POPTR_0016s03100 (7:225)	NA	NA	Q43207	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213231.1.S1_s_at	B	B1S	POPTR_0016s03320	POPTR_0016s03320 (5:407)	scaffold_16:1726681-1728074(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g106190.1	"Transcription factors TFIIS, elongin A, CRSP70, conserved; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213239.1.S1_at	B	B2S	POPTR_0016s03340	POPTR_0016s03340 (0:177)//POPTR_0311s00200 (0:177)	NA	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.213239.1.S1_x_at	B	B2S	POPTR_0016s03340	POPTR_0016s03340 (2:402)//POPTR_0311s00200 (2:402)	NA	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.21324.1.A1_at	B	B1S	POPTR_0014s04270	POPTR_0014s04270 (7:251)	scaffold_14:3345111-3345452(-) (11)	NA	P0C035	RING-H2 finger protein ATL60	AT1G53820.1	RING/U-box superfamily protein 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213264.1.S1_s_at	B	B1S	POPTR_0016s03920	POPTR_0016s03920 (8:513)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38380.1	plant protein of unknown function domain containing protein	Medtr7g067490.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213269.1.S1_at	B	B1S	POPTR_0016s04020	POPTR_0016s04020 (8:741)	NA	NA	Q84TJ0	Probable methyltransferase PMT6	AT3G10200.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g31480.2	"methyltransferase, putative, expressed"	Medtr1g090480.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213270.1.S1_at	B	B1S	POPTR_0016s04030	POPTR_0016s04030 (7:232)	scaffold_16:2286677-2287137(-) (10)	NA	NA	NA	AT5G04050.1	RNA-directed DNA polymerase (reverse transcriptase) 	LOC_Os06g44880.1	"type II intron maturase protein, putative"	Medtr6g012950.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase); WW/Rsp5/WWP "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213277.1.S1_at	B	B1S	POPTR_0016s04140	POPTR_0016s04140 (8:95)	NA	NA	NA	NA	AT3G57200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41451.1); Has 94 Blast hits to 94 proteins in 31 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g13200.1	"abscisic acid insensitive 8, putative, expressed"	Medtr3g026170.1	"ABI8/ELD1/KOB1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213292.1.S1_x_at	B	B8S	POPTR_0016s04390	POPTR_0016s04390 (6:461)//POPTR_0016s04770 (6:461)//POPTR_0016s04640 (1:461)//POPTR_0016s04720 (6:460)//POPTR_0016s04780 (6:460)//POPTR_0016s04350 (5:447)//POPTR_0016s04400 (0:445)//POPTR_0016s04380 (5:436)	scaffold_16:2845745-2853764(-) (10)	NA	NA	NA	AT3G06990.1	Cysteine/Histidine-rich C1 domain family protein 	NA	NA	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.213317.1.S1_x_at	B	B1S	POPTR_0006s05600	POPTR_0006s05600 (7:1147)	NA	NA	Q3EAI1	Transcription factor bHLH60	AT3G57800.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g32510.4	"BHLH transcription factor, putative, expressed"	Medtr1g071420.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.213322.1.S1_at	B	B1S	POPTR_0016s05330	POPTR_0016s05330 (8:1013)	scaffold_16:3280765-3281112(-) (10)	NA	NA	NA	AT3G57660.1	nuclear RNA polymerase A1 	NA	NA	Medtr4g129570.1	"DNA-directed RNA polymerase, subunit beta-prime "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213328.1.S1_at	B	B1S	POPTR_0016s05460	POPTR_0016s05460 (0:163)	scaffold_16:3388234-3388455(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213337.1.S1_at	B	B1S	POPTR_0016s05630	POPTR_0016s05630 (7:606)	scaffold_16:3544704-3546024(-) (10)	NA	Q9LM02	Cycloartenol-C-24-methyltransferase	AT5G13710.2	sterol methyltransferase 1 	LOC_Os07g10600.1	"cycloartenol-C-24-methyltransferase 1, putative, expressed"	Medtr3g039530.1	Methyltransferase type 11 	GO:0006694|steroid biosynthetic process	GO:0008168|methyltransferase activity	NA
PtpAffx.213352.1.S1_at	B	B1S	POPTR_0016s06150	POPTR_0016s06150 (0:4735)	NA	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr8g067950.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.213371.1.S1_at	B	B1S	POPTR_0016s06490	POPTR_0016s06490 (7:289)	scaffold_16:4362424-4363020(+) (11)	NA	A6MMN9	DNA-directed RNA polymerase subunit alpha	ATCG00740.1	RNA polymerase subunit alpha 	LOC_Os09g07910.1	"DNA-directed RNA polymerase subunit alpha, putative"	Medtr4g042510.1	"RNA polymerase, RBP11-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213373.1.S1_at	B	B2S	POPTR_0016s06560	POPTR_0016s06550 (3:1989)//POPTR_0016s06560 (5:115)	scaffold_16:4395255-4400678(+) (9)	NA	Q9FG16	Pentatricopeptide repeat-containing protein At5g06540	AT5G06540.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g08120.1	"pentatricopeptide, putative, expressed"	Medtr3g069190.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213410.1.S1_s_at	B	B1S	POPTR_0016s07240	POPTR_0016s07240 (8:417)	NA	NA	NA	NA	AT3G52480.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213419.1.S1_at	B	B1S	POPTR_0016s07350	POPTR_0016s07350 (2:55)	scaffold_16:5219838-5220009(+) (11)	NA	Q5F477	UPF0554 protein C2orf43 homolog	AT3G11620.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g72870.3	"BAS1, putative, expressed"	AC146630_6.1	"Lipase, active site AC146630.25 17675-25469 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213426.1.S1_at	B	B1S	POPTR_0016s07460	POPTR_0016s07460 (2:92)	scaffold_16:5344001-5344366(+) (11)	NA	Q9LZ17	40S ribosomal protein S17-4	AT5G04800.4	Ribosomal S17 family protein 	LOC_Os03g01900.1	"40S ribosomal protein S17, putative, expressed"	AC146550_9.1	Ribosomal protein S17e AC146550.40 33438-32707 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.213435.1.S1_at	B	B1S	POPTR_0016s07600	POPTR_0016s07600 (8:684)	scaffold_16:5463984-5464673(-) (11)	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os11g05650.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213475.1.S1_at	B	B1S	POPTR_0016s08530	POPTR_0016s08530 (8:263)	scaffold_16:6340683-6341038(+) (11)	NA	P47927	Floral homeotic protein APETALA 2	AT2G28550.3	related to AP2.7 	LOC_Os07g13170.2	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.213479.1.S1_at	B	B2S	POPTR_0016s08590	POPTR_0016s08590 (7:357)//POPTR_0006s13430 (0:310)	NA	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT2G37050.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	Medtr7g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213502.1.S1_at	B	B1S	POPTR_0005s01990	POPTR_0005s01990 (0:266)	scaffold_16:6996372-6996601(+) (11)	NA	Q8N9H8	Probable exonuclease mut-7 homolog	AT1G56310.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os05g28860.1	"3'-5' exonuclease, putative, expressed"	Medtr1g100330.1	"Polynucleotidyl transferase, Ribonuclease H fold "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.213519.1.S1_at	B	B1S	POPTR_0016s09590	POPTR_0016s09590 (7:894)	scaffold_16:7504620-7506119(-) (11)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os04g38480.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g011540.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.213530.1.S1_at	B	B2S	POPTR_0016s11020	POPTR_0016s11020 (5:2007)//POPTR_0016s11025 (0:509)	NA	NA	NA	NA	AT2G36580.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213531.1.S1_s_at	B	B1S	POPTR_0016s11010	POPTR_0016s11010 (7:325)	NA	NA	NA	NA	AT3G10040.1	sequence-specific DNA binding transcription factors 	LOC_Os11g06410.3	"homeodomain, putative, expressed"	Medtr1g073690.1	"Homeodomain-like, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213542.1.S1_at	B	B1S	POPTR_0016s10700	POPTR_0016s10700 (2:635)	NA	NA	NA	NA	AT5G03420.1	5'-AMP-activated protein kinase-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213563.1.S1_at	B	B1S	POPTR_0016s10410	POPTR_0016s10410 (3:197)	scaffold_16:8649925-8650557(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213568.1.S1_at	B	B1S	POPTR_0016s10220	POPTR_0016s10220 (8:689)	scaffold_16:8367592-8368336(+) (10)	NA	O80792	Putative DEAD-box ATP-dependent RNA helicase 33	AT2G37920.1	copper ion transmembrane transporters 	LOC_Os02g35620.1	expressed protein	AC234023_1.1	hypothetical protein AC234023.1 47-1836 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213580.1.S1_at	B	B1S	POPTR_0016s11530	POPTR_0016s11530 (0:199)	scaffold_16:10745081-10745221(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213589.1.S1_at	B	B3S	POPTR_0015s07070	POPTR_0015s07070 (2:1019)//POPTR_0015s07080 (2:957)//POPTR_0015s07050 (0:802)	NA	NA	Q0WML0	ABC transporter B family member 27	AT5G39040.1	transporter associated with antigen processing protein 2 	LOC_Os03g54790.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr6g009450.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.213598.1.S1_at	B	B1S	POPTR_0016s11750	POPTR_0016s11750 (6:202)	scaffold_588:12222-12439(-) (11)	NA	Q9M392	Reticulon-like protein B12	AT3G54120.1	Reticulon family protein 	LOC_Os01g63240.1	"reticulon domain containing protein, putative, expressed"	Medtr4g012120.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.213618.1.S1_at	B	B1S	POPTR_0016s12200	POPTR_0016s12200 (8:3942)	scaffold_16:11523684-11527626(-) (9)	NA	Q5YDB5	RNA polymerase II C-terminal domain phosphatase-like 2	AT5G01270.1	carboxyl-terminal domain (ctd) phosphatase-like 2 	LOC_Os02g42600.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g024780.1	NLI interacting factor 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.213635.1.S1_at	B	B1S	POPTR_0016s12690	POPTR_0016s12690 (6:1447)	scaffold_16:12071398-12073231(+) (9)	NA	Q38833	"Chlorophyll synthase, chloroplastic"	AT3G51820.1	UbiA prenyltransferase family protein 	LOC_Os05g28200.1	"prenyltransferase, putative, expressed"	NA	NA	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.213641.1.S1_at	B	B2S	POPTR_0016s12800	POPTR_0016s12800 (8:545)//POPTR_0016s12810 (0:454)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G45616.1	receptor like protein 6 	LOC_Os12g11370.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr3g167060.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.21365.1.S1_at	B	B1S	POPTR_0016s03780	POPTR_0016s03780 (2:490)	scaffold_16:2123682-2126281(+) (11)	NA	NA	NA	AT3G57062.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system. 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213678.1.S1_x_at	B	B1S	POPTR_0064s00220	POPTR_0064s00220 (2:1917)	scaffold_64:21828-25159(+) (9)	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os12g11930.1	"disease resistance protein SlVe2 precursor, putative, expressed"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.213687.1.S1_at	B	B1S	POPTR_0016s13570	POPTR_0016s13570 (7:345)	scaffold_16:12739145-12739546(-) (11)	NA	P68203	Ubiquitin-40S ribosomal protein S27a	AT1G23410.1	Ribosomal protein S27a / Ubiquitin family protein 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213704.1.S1_at	B	B1S	POPTR_2046s00200	POPTR_2046s00200 (0:152)	scaffold_2046:304-1015(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213720.1.S1_at	B	B1S	POPTR_0016s14220	POPTR_0016s14220 (7:617)	NA	NA	NA	NA	AT3G51610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os05g07640.1	expressed protein	Medtr7g080110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213743.1.S1_at	B	B1S	POPTR_0016s14730	POPTR_0016s14730 (5:493)	NA	NA	NA	NA	AT2G14110.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g52730.1	"magnesium-dependent phosphatase 1, putative, expressed"	Medtr2g009620.1	"HAD-superfamily phosphatase subfamily IIIC; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213750.1.S1_at	B	B1S	POPTR_0016s15040	POPTR_0016s15040 (1:62)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213751.1.S1_at	B	B1S	POPTR_0016s15050	POPTR_0016s15050 (7:433)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213780.1.S1_at	B	B2S	POPTR_0289s00220	POPTR_0289s00220 (6:57)//POPTR_0017s07120 (5:57)	scaffold_289:10016-17526(-) (9)	NA	NA	NA	AT1G29420.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37350.1	"OsSAUR40 - Auxin-responsive SAUR gene family member, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213783.1.S1_at	B	B1S	POPTR_0017s07140	POPTR_0017s07140 (6:2448)	scaffold_17:5529257-5531896(-) (10)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.2	Cysteine proteinases superfamily protein 	LOC_Os05g11770.2	"ulp1 protease family protein, putative, expressed"	Medtr2g009590.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213784.1.S1_at	B	B1S	POPTR_0017s07150	POPTR_0017s07150 (5:297)	NA	NA	P60028	Rab GDP dissociation inhibitor alpha	AT5G09550.1	GDP dissociation inhibitor family protein / Rab GTPase activator family protein 	LOC_Os03g16900.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g121110.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213796.1.S1_at	B	B1S	POPTR_0017s07390	POPTR_0017s07390 (0:529)	NA	NA	NA	NA	AT4G14000.1	Putative methyltransferase family protein 	LOC_Os09g19570.1	"AGAP009532-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213799.1.S1_at	B	B2S	POPTR_0017s07390	POPTR_0017s07420 (0:245)//POPTR_0017s07390 (0:243)	NA	NA	NA	NA	AT4G14000.1	Putative methyltransferase family protein 	LOC_Os09g19570.1	"AGAP009532-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213804.1.S1_at	B	B1S	POPTR_0017s07530	POPTR_0017s07530 (8:910)	scaffold_17:5863513-5866605(+) (9)	NA	NA	NA	AT3G23600.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33100.1	"endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed"	Medtr2g026480.1	Dienelactone hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213839.1.S1_at	B	B1S	POPTR_0017s08230	POPTR_0017s08230 (7:1018)	NA	NA	Q9MAT6	High mobility group B protein 15	AT1G04880.1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain 	LOC_Os02g27060.1	"high mobility group, putative, expressed"	Medtr1g146490.1	HMG1/2 (high mobility group) box; AT-rich interaction region 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.213846.1.S1_at	B	B1S	POPTR_0011s10560	POPTR_0011s10560 (7:659)	scaffold_11:13044255-13045382(-) (9)	NA	Q9LFQ3	Paired amphipathic helix protein Sin3-like 2	AT5G15020.1	SIN3-like 2 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr6g009610.1	"Paired amphipathic helix protein Sin3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213858.1.S1_at	B	B2S	POPTR_0017s10590	POPTR_0001s35360 (0:601)//POPTR_0017s10590 (7:550)	scaffold_17:10013346-10013949(-) (11)	NA	Q9VVE5	RNA-binding protein Musashi homolog Rbp6	AT5G40490.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g23120.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213858.1.S1_x_at	B	B2S	POPTR_0017s10590	POPTR_0001s35360 (0:653)//POPTR_0017s10590 (7:602)	scaffold_17:10013346-10014001(-) (11)	NA	Q9VVE5	RNA-binding protein Musashi homolog Rbp6	AT5G40490.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g23120.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.213872.1.S1_at	B	B1S	POPTR_0017s10810	POPTR_0017s10810 (2:223)	scaffold_17:10344075-10344499(+) (11)	NA	Q9SS98	Oleosin 5	AT3G01570.1	Oleosin family protein 	LOC_Os03g49190.1	"oleosin, putative, expressed"	Medtr6g005060.1	Oleosin 	NA	NA	GO:0043231|intracellular membrane-bounded organelle||GO:0016021|integral to membrane||GO:0012511|monolayer-surrounded lipid storage body
PtpAffx.213883.1.S1_x_at	B	B1S	POPTR_0003s02865	POPTR_0003s02865 (0:188)	scaffold_17:10638713-10638919(-) (11)	NA	Q6XKE6	Genome polyprotein	NA	NA	LOC_Os06g18164.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213923.1.S1_x_at	B	B1S	POPTR_0004s06250	POPTR_0004s06250 (8:169)	scaffold_1:39860567-39860736(-) (10)//scaffold_17:11432460-11432629(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g39580.1	zinc knuckle family protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.213928.1.S1_at	B	B1S	POPTR_0017s11820	POPTR_0017s11820 (7:85)	scaffold_919:8539-8624(-) (11)	NA	Q8IYB8	"ATP-dependent RNA helicase SUPV3L1, mitochondrial"	AT5G39840.1	"ATP-dependent RNA helicase, mitochondrial, putative "	LOC_Os04g38630.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g006820.1	"Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.213933.1.S1_at	B	B1S	POPTR_0017s11890	POPTR_0017s11890 (4:134)	scaffold_17:11849016-11849480(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213958.1.S1_at	B	B1S	POPTR_0017s12300	POPTR_0017s12300 (8:1462)	scaffold_17:12523210-12526184(+) (9)	NA	Q9LVQ0	Pectinesterase 31	AT3G29090.1	pectin methylesterase 31 	LOC_Os10g26680.1	"pectinesterase, putative, expressed"	Medtr7g010850.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21397.1.S1_at	B	B1S	POPTR_0004s02190	POPTR_0004s02190 (4:221)	scaffold_4:1349198-1349624(-) (11)	NA	NA	NA	AT3G63095.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g24300.1	"LTPL1 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	AC233676_41.1	hypothetical protein AC233676.2 159341-159811 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213973.1.S1_at	B	B1S	POPTR_0017s12560	POPTR_0017s12560 (6:185)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213998.1.S1_at	B	B1S	POPTR_0017s12960	POPTR_0017s12960 (6:1271)	NA	NA	Q8L9Y0	Serine carboxypeptidase-like 25	AT3G02110.1	serine carboxypeptidase-like 25 	LOC_Os02g55130.4	"OsSCP10 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.214002.1.S1_at	B	B1S	POPTR_0017s13060	POPTR_0017s13060 (8:363)	scaffold_17:13218012-13218566(+) (11)	NA	Q5VWG9	Transcription initiation factor TFIID subunit 3	AT3G02160.1	Bromodomain transcription factor 	LOC_Os12g38620.3	"bromodomain associated family protein, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214042.1.S1_x_at	B	B4S	POPTR_0018s07630	POPTR_0018s07630 (7:494)//POPTR_0057s00200 (0:487)//POPTR_0023s00655 (0:468)//POPTR_0001s19950 (0:438)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214055.1.S1_x_at	B	B1S	POPTR_0018s04710	POPTR_0018s04710 (8:1212)	NA	NA	Q9M2Y9	Transcription factor RAX3	AT3G49690.1	myb domain protein 84 	LOC_Os08g15020.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214061.1.S1_at	B	B1S	POPTR_0018s04870	POPTR_0018s04870 (8:1517)	NA	NA	Q54J73	Poly(A) polymerase	AT2G25850.4	poly(A) polymerase 2 	LOC_Os06g36360.3	expressed protein	Medtr3g128240.1	"DNA polymerase, beta-like region; Poly(A) polymerase, RNA-binding region; Poly(A) polymerase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.214061.1.S1_x_at	B	B1S	POPTR_0018s04870	POPTR_0018s04870 (8:1517)	NA	NA	Q54J73	Poly(A) polymerase	AT2G25850.4	poly(A) polymerase 2 	LOC_Os06g36360.3	expressed protein	Medtr3g128240.1	"DNA polymerase, beta-like region; Poly(A) polymerase, RNA-binding region; Poly(A) polymerase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.214064.1.S1_at	B	B1S	POPTR_0018s04980	POPTR_0018s04980 (7:692)	NA	NA	P42044	"Ferrochelatase-2, chloroplastic"	AT5G26030.2	ferrochelatase 1 	LOC_Os09g12560.2	"ferrochelatase-2, chloroplast precursor, putative, expressed"	Medtr3g140120.1	Ferrochelatase 	GO:0006783|heme biosynthetic process	GO:0004325|ferrochelatase activity	NA
PtpAffx.214071.1.S1_at	B	B1S	POPTR_0018s05150	POPTR_0018s05150 (8:759)	NA	NA	O49954	"Glycine dehydrogenase [decarboxylating], mitochondrial"	AT4G33010.2	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214075.1.S1_at	B	B2S	POPTR_0018s05200	POPTR_0018s05200 (8:1580)//POPTR_0006s24530 (0:1519)	NA	NA	Q66GS2	"Probable beta-1,3-galactosyltransferase 12"	AT2G26100.1	Galactosyltransferase family protein 	LOC_Os06g06280.2	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.214084.1.S1_at	B	B4S	POPTR_0018s05320	POPTR_0015s07070 (0:563)//POPTR_0015s07080 (0:556)//POPTR_0015s07050 (0:556)//POPTR_0018s05320 (2:92)	scaffold_18:4850413-4850953(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g54790.1	"ABC transporter, ATP-binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214096.1.S1_x_at	B	B2S	POPTR_0003s05775	POPTR_0003s05770 (1:445)//POPTR_0003s05775 (3:431)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214123.1.S1_x_at	B	B1S	POPTR_0009s00270	POPTR_0009s00270 (8:174)	scaffold_18:159025-159184(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214133.1.S1_at	B	B1S	POPTR_0018s00370	POPTR_0018s00370 (8:493)	scaffold_18:276020-276557(+) (11)	NA	Q9SL78	Putative RING-H2 finger protein ATL12	AT2G20030.1	RING/U-box superfamily protein 	LOC_Os05g51780.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr6g098760.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214150.1.S1_at	B	B1S	POPTR_0018s00770	POPTR_0018s00770 (1:66)	scaffold_18:675784-681819(-) (10)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.1	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214162.1.S1_at	B	B1S	POPTR_0018s00940	POPTR_0018s00940 (6:1190)	scaffold_18:858342-860098(-) (10)	NA	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os07g09580.1	"aminoacyl-tRNA synthetase, putative, expressed"	Medtr3g135760.1	"aminoacyl-tRNA synthetase family, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214220.1.S1_x_at	B	B1S	POPTR_0018s02160	POPTR_0018s02160 (6:1930)	NA	NA	NA	NA	AT5G25265.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g08180.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214229.1.S1_at	B	B1S	POPTR_0018s02330	POPTR_0018s02330 (8:1254)	scaffold_18:2087564-2088818(+) (9)	NA	P62598	Two-component response regulator ARR12	AT2G25180.1	response regulator 12 	LOC_Os02g08500.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.214234.1.S1_x_at	B	B1A	POPTR_0018s02420	POPTR_0018s02420 (8:273)	scaffold_18:2197471-2197985(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214236.1.S1_at	B	B2S	POPTR_0018s02460	POPTR_0006s27940 (0:490)//POPTR_0018s02460 (8:490)	NA	NA	Q9LEU7	CBL-interacting serine/threonine-protein kinase 5	AT5G10930.1	CBL-interacting protein kinase 5 	LOC_Os09g25090.1	"CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g016620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214236.1.S1_x_at	B	B2S	POPTR_0018s02460	POPTR_0006s27940 (0:490)//POPTR_0018s02460 (8:490)	NA	NA	Q9LEU7	CBL-interacting serine/threonine-protein kinase 5	AT5G10930.1	CBL-interacting protein kinase 5 	LOC_Os09g25090.1	"CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g016620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214246.1.S1_at	B	B2S	POPTR_0018s02650	POPTR_0018s02650 (8:286)//POPTR_0018s08140 (0:286)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214249.1.S1_at	B	B1S	POPTR_0018s02710	POPTR_0018s02710 (1:94)	scaffold_18:2426438-2427265(+) (11)	NA	P52032	"Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic"	AT2G25080.1	glutathione peroxidase 1 	LOC_Os06g08670.1	"glutathione peroxidase, putative, expressed"	Medtr1g017000.1	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
PtpAffx.21425.1.A1_at	B	B1S	POPTR_0001s32640	POPTR_0001s32640 (7:629)	NA	NA	NA	NA	AT3G23900.3	RNA recognition motif (RRM)-containing protein 	LOC_Os01g01150.3	"RNA recognition motif, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.214276.1.S1_at	B	B1S	POPTR_0018s03250	POPTR_0018s03250 (7:451)	scaffold_18:2868028-2868653(+) (11)	NA	O04660	Glutamate receptor 2.1	AT5G27100.1	glutamate receptor 2.1 	LOC_Os09g25980.1	"glutamate receptor 2.6 precursor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214336.1.S1_at	B	B1S	POPTR_0018s08750	POPTR_0018s08750 (8:153)	scaffold_18:9688589-9688838(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214337.1.S1_at	B	B1S	POPTR_0018s08780	POPTR_0018s08780 (4:338)	scaffold_18:9698681-9699234(+) (11)	NA	Q6DCE8	Low affinity cationic amino acid transporter 2	AT1G17120.1	cationic amino acid transporter 8 	LOC_Os06g34830.1	"amino acid permease family protein, putative, expressed"	Medtr4g137890.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214346.1.S1_at	B	B1S	POPTR_0018s09010	POPTR_0018s09010 (6:1301)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214364.1.S1_at	B	B1S	POPTR_0006s17820	POPTR_0006s17820 (0:128)	scaffold_18:10342018-10342153(-) (11)	NA	NA	NA	AT4G15450.1	Senescence/dehydration-associated protein-related 	LOC_Os01g52480.1	"senescence-associated protein, putative, expressed"	Medtr4g159850.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214364.1.S1_x_at	B	B1S	POPTR_0006s17820	POPTR_0006s17820 (0:136)	scaffold_18:10342010-10342150(-) (11)	NA	NA	NA	AT4G15450.1	Senescence/dehydration-associated protein-related 	LOC_Os01g52480.1	"senescence-associated protein, putative, expressed"	Medtr4g159850.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21439.1.A1_at	B	B1S	POPTR_0007s05300	POPTR_0007s05300 (0:109)	NA	NA	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os02g18320.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr3g101870.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.214392.1.S1_at	B	B1S	POPTR_0018s10270	POPTR_0018s10270 (8:489)	scaffold_18:11226669-11227263(+) (11)	NA	Q9XGI7	Nicotianamine synthase	AT5G56080.1	nicotianamine synthase 2 	LOC_Os03g19420.2	"nicotianamine synthase, putative, expressed"	Medtr1g100600.1	Nicotianamine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0030418|nicotianamine biosynthetic process||GO:0044106|cellular amine metabolic process	GO:0030410|nicotianamine synthase activity	NA
PtpAffx.2144.1.S1_at	B	B1S	POPTR_0004s12350	POPTR_0004s12350 (8:603)	scaffold_4:11457957-11458586(+) (10)	NA	Q9MAB9	Membrane-anchored ubiquitin-fold protein 1	AT3G01050.1	membrane-anchored ubiquitin-fold protein 1 precursor 	LOC_Os03g31290.2	"membrane-anchored ubiquitin-fold protein, putative, expressed"	Medtr6g014210.1	"Membrane-anchored ubiquitin-fold protein 1 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214405.1.S1_at	B	B1S	POPTR_0018s10420	POPTR_0018s10420 (2:185)	scaffold_18:11351972-11352506(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21443.1.S1_at	B	B1S	POPTR_0008s14830	POPTR_0008s14830 (7:604)	NA	NA	NA	NA	AT1G27000.1	Protein of unknown function (DUF1664) 	LOC_Os05g08980.3	expressed protein	Medtr5g039570.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214462.1.S1_at	B	B1S	POPTR_0018s11490	POPTR_0018s11490 (7:199)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214484.1.S1_at	B	B1S	POPTR_0011s13110	POPTR_0011s13110 (2:55)	scaffold_11:15820678-15820974(+) (11)	NA	Q9LW83	G-type lectin S-receptor-like serine/threonine-protein kinase CES101	AT3G16030.1	lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052620.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214503.1.S1_at	B	B2A	POPTR_0018s12320	POPTR_0018s12320 (6:229)//POPTR_1605s00200 (4:218)	scaffold_1605:1789-4394(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214514.1.S1_s_at	B	B4S	POPTR_0025s00290	POPTR_0025s00290 (8:31)//POPTR_0025s00310 (8:31)//POPTR_0204s00250 (8:31)//POPTR_0204s00210 (8:31)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.214515.1.S1_at	B	B7S	POPTR_0018s12460	POPTR_0018s12440 (0:767)//POPTR_0025s00300 (0:759)//POPTR_0018s12460 (4:498)//POPTR_0025s00200 (0:488)//POPTR_0025s00270 (0:304)//POPTR_0204s00200 (0:288)//POPTR_0025s00320 (0:280)	scaffold_18:12931051-12931829(+) (10)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT1G07390.2	receptor like protein 1 	LOC_Os02g02490.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr3g166710.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.214515.1.S1_x_at	B	B6S	POPTR_0018s12460	POPTR_0025s00300 (2:855)//POPTR_0025s00320 (0:838)//POPTR_0018s12440 (0:828)//POPTR_0204s00200 (0:745)//POPTR_0018s12460 (4:498)//POPTR_0025s00200 (0:488)	scaffold_18:12930955-12931829(+) (10)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT1G07390.2	receptor like protein 1 	LOC_Os02g02490.1	"phytosulfokine receptor precursor, putative, expressed"	Medtr3g166710.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.214549.1.S1_at	B	B3S	POPTR_0025s00700	POPTR_0025s00700 (4:2590)//POPTR_0027s00320 (2:575)//POPTR_0027s00330 (0:178)	NA	NA	Q6NZ09	Proteasomal ubiquitin receptor ADRM1	AT2G26590.3	regulatory particle non-ATPase 13 	LOC_Os05g51640.2	"adhesion regulating molecule family, putative, expressed"	Medtr4g161200.1	Adhesion regulating molecule 	NA	NA	GO:0005737|cytoplasm||GO:0005634|nucleus
PtpAffx.214556.1.S1_at	B	B2S	POPTR_0025s00780	POPTR_0008s06170 (0:247)//POPTR_0025s00780 (6:241)	scaffold_25:430553-430862(-) (11)	NA	NA	NA	AT2G21110.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os03g59440.1	"dirigent, putative, expressed"	Medtr3g138740.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214565.1.S1_s_at	B	B1S	POPTR_0018s12720	POPTR_0018s12720 (2:188)	scaffold_18:13238219-13238651(+) (11)	NA	O22845	Calmodulin-like protein 5	AT2G43290.1	Calcium-binding EF-hand family protein 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g121290.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214570.1.S1_at	B	B1S	POPTR_0018s12870	POPTR_0018s12870 (3:133)	NA	NA	NA	NA	AT3G15810.1	Protein of unknown function (DUF567) 	NA	NA	Medtr4g005550.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214590.1.S1_at	B	B2S	POPTR_0018s13460	POPTR_0018s13460 (0:1606)//POPTR_0018s13510 (0:1605)	NA	NA	P43293	Probable serine/threonine-protein kinase NAK	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os04g47620.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr5g026500.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214592.1.S1_x_at	B	B2S	POPTR_0015s00355	POPTR_1538s00200 (0:411)//POPTR_0015s00355 (3:402)	scaffold_18:13766867-13767279(-) (11)//scaffold_8:16485034-16485446(+) (9)	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214613.1.S1_at	B	B1S	POPTR_0018s13820	POPTR_0018s13820 (3:296)	scaffold_18:14080128-14080689(-) (10)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009780.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.214643.1.S1_at	B	B1S	POPTR_0013s12600	POPTR_0013s12600 (8:280)	scaffold_13:13198698-13199006(-) (11)//scaffold_13:13302251-13302585(-) (11)	NA	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr5g082640.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.214691.1.S1_at	B	B1S	POPTR_0728s00200	POPTR_0728s00200 (7:1252)	NA	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os04g54190.1	"cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed"	Medtr4g124450.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214694.1.S1_at	B	B1S	POPTR_0004s07060	POPTR_0004s07060 (6:2004)	NA	NA	NA	NA	AT5G62650.1	Tic22-like family protein 	LOC_Os01g12550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214695.1.S1_at	B	B1A	POPTR_0004s06960	POPTR_0004s06960 (5:265)	scaffold_4:5769695-5780254(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214723.1.S1_x_at	B	B1S	POPTR_0012s04930	POPTR_0012s04930 (7:158)	NA	NA	Q40392	TMV resistance protein N	AT1G27170.2	transmembrane receptors;ATP binding 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.214733.1.S1_s_at	B	B1S	POPTR_0004s15350	POPTR_0004s15350 (5:115)	scaffold_1:18789187-18789318(+) (11)	NA	NA	NA	AT5G28780.1	PIF1 helicase 	LOC_Os07g09300.1	"retrotransposon protein, putative, unclassified"	Medtr3g077250.1	"Protein of unknown function DUF889, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214781.1.S1_s_at	B	B2S	POPTR_0017s03790	POPTR_0017s03655 (5:264)//POPTR_0017s03790 (8:261)	NA	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214786.1.S1_at	B	B5S	POPTR_0019s03350	POPTR_0170s00200 (8:31)//POPTR_0019s06220 (8:31)//POPTR_0019s06170 (8:31)//POPTR_0019s03350 (8:31)//POPTR_0019s06190 (8:31)	NA	NA	P59287	"Casbene synthase, chloroplastic"	AT5G23960.1	terpene synthase 21 	LOC_Os08g04500.2	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.214801.1.S1_at	B	B1S	POPTR_0001s40550	POPTR_0001s40550 (7:553)	NA	NA	NA	NA	AT2G20562.1	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11600.1	conserved hypothetical protein	Medtr2g018970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214817.1.S1_at	B	B1S	POPTR_0001s40950	POPTR_0001s40950 (6:468)	scaffold_1:40518957-40520528(-) (9)	NA	NA	NA	AT1G71820.2	SEC6 	LOC_Os02g51430.1	"SEC6, putative, expressed"	Medtr4g025480.1	Exocyst complex component Sec6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214849.1.S1_at	B	B2S	POPTR_0007s01500	POPTR_0596s00200 (5:938)//POPTR_0007s01500 (5:724)	NA	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT2G30700.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 68 Blast hits to 67 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g38980.2	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214868.1.S1_x_at	B	B3S	POPTR_0015s14350	POPTR_0004s01610 (3:158)//POPTR_0015s14350 (6:144)//POPTR_0012s14340 (4:143)	NA	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214878.1.S1_at	B	B1S	POPTR_0001s14540	POPTR_0001s14540 (7:370)	scaffold_17:5570034-5570377(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21489.1.S1_at	B	B1S	POPTR_0005s17470	POPTR_0005s17470 (8:461)	NA	NA	Q8L936	Putative clathrin assembly protein At4g40080	AT4G40080.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os09g29300.1	"clathrin assembly protein, putative, expressed"	Medtr3g150130.1	Lipocalin; ENTH/VHS; ANTH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214904.1.S1_at	B	B2S	POPTR_0010s20280	POPTR_0010s20280 (8:479)//POPTR_0010s20260 (7:464)	NA	NA	Q9FIA0	Cytokinin-N-glucosyltransferase 2	AT3G55700.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g13770.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g092660.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214917.1.S1_x_at	B	B4S	POPTR_0004s01420	POPTR_0004s01420 (5:586)//POPTR_0004s01440 (4:586)//POPTR_0012s00860 (0:508)//POPTR_0012s00870 (2:73)	NA	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02310.1	expressed protein	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.214978.1.S1_x_at	B	B1S	POPTR_0009s02480	POPTR_0009s02480 (1:177)	scaffold_878:2649-2818(-) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT3G29590.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g57480.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215013.1.S1_at	B	B1S	POPTR_0007s15270	POPTR_0007s15270 (8:178)	NA	NA	Q8L4M1	WD repeat-containing protein DWA1	AT2G19430.1	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 	LOC_Os09g19900.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC233845_6.1	WD40-like AC233845.2 14214-12180 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215048.1.S1_at	B	B1A	POPTR_0007s10660	POPTR_0007s10660 (3:244)	scaffold_7:10689765-10690045(+) (10)	NA	NA	NA	AT5G67230.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g47340.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr5g016530.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
PtpAffx.215072.1.S1_at	B	B1S	POPTR_0182s00240	POPTR_0182s00240 (8:621)	scaffold_182:31741-32385(-) (9)//scaffold_19:1395817-1396466(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.215079.1.S1_at	B	B1S	POPTR_0019s01710	POPTR_0019s01710 (8:149)	NA	NA	Q15436	Protein transport protein Sec23A	AT1G05520.1	Sec23/Sec24 protein transport family protein 	LOC_Os11g24560.1	"protein transport protein, putative, expressed"	Medtr3g104400.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.215079.1.S1_x_at	B	B1S	POPTR_0019s01710	POPTR_0019s01710 (8:421)	NA	NA	Q15436	Protein transport protein Sec23A	AT1G05520.1	Sec23/Sec24 protein transport family protein 	LOC_Os11g24560.1	"protein transport protein, putative, expressed"	Medtr3g104400.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.215083.1.S1_at	B	B2S	POPTR_0019s01890	POPTR_0019s01930 (4:110)//POPTR_0019s01890 (6:110)	scaffold_19:1625377-1625490(+) (10)	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr5g099260.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.215089.1.S1_at	B	B1S	POPTR_0018s04820	POPTR_0018s04820 (2:436)	scaffold_18:4192907-4193382(-) (11)	NA	Q42980	Oleosin 16 kDa	AT2G25890.1	Oleosin family protein 	LOC_Os04g46200.1	"oleosin, putative, expressed"	Medtr3g133000.1	Oleosin 	NA	NA	GO:0043231|intracellular membrane-bounded organelle||GO:0016021|integral to membrane||GO:0012511|monolayer-surrounded lipid storage body
PtpAffx.215117.1.S1_at	B	B3S	POPTR_0003s08790	POPTR_0001s02750 (4:2050)//POPTR_0003s08790 (8:1982)//POPTR_0003s08780 (3:83)	scaffold_3:10159142-10163753(+) (11)	NA	Q6ZGY0	Probable protein phosphatase 2C 26	AT2G35350.1	poltergeist like 1 	LOC_Os02g46490.1	"protein phosphatase 2C, putative, expressed"	Medtr8g102940.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215135.1.S1_at	B	B1S	POPTR_0001s03080	POPTR_0001s03080 (4:416)	scaffold_3:9913869-9914285(+) (11)	NA	P38456	Uncharacterized mitochondrial protein ymf11	AT5G46920.1	"Intron maturase, type II family protein "	LOC_Os10g41790.2	"type II intron maturase protein, putative, expressed"	Medtr2g007990.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	GO:0044260|cellular macromolecule metabolic process||GO:0008380|RNA splicing	NA	NA
PtpAffx.215152.1.S1_at	B	B1S	POPTR_0010s04000	POPTR_0010s04000 (7:166)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215162.1.S1_at	B	B3S	POPTR_0018s04310	POPTR_0018s03980 (3:1209)//POPTR_0018s04310 (8:1069)//POPTR_0018s03820 (4:1064)	NA	NA	NA	NA	AT4G16130.1	arabinose kinase 	LOC_Os02g04840.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr1g010200.1	"Glycoside hydrolase, family 10; Galactokinase, glycosyltransferase N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215206.1.S1_at	B	B2S	POPTR_0002s01530	POPTR_0002s01530 (6:449)//POPTR_0005s26870 (0:400)	NA	NA	P48147	Prolyl endopeptidase	AT1G76140.1	Prolyl oligopeptidase family protein 	LOC_Os01g01830.1	"OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.215211.1.S1_s_at	B	B1S	POPTR_0009s10010	POPTR_0009s10010 (7:233)	scaffold_9:8717203-8718366(+) (9)	NA	NA	NA	AT1G44542.1	Cyclase family protein 	LOC_Os09g02270.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215232.1.S1_at	B	B2S	POPTR_0063s00250	POPTR_0063s00250 (6:534)//POPTR_0019s13720 (0:348)	NA	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT3G09550.1	Ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr7g120560.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215232.1.S1_x_at	B	B2S	POPTR_0063s00250	POPTR_0063s00250 (7:534)//POPTR_0019s13720 (1:348)	NA	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT3G09550.1	Ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr7g120560.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215260.1.S1_at	B	B1S	POPTR_0019s13140	POPTR_0019s13140 (8:740)	NA	NA	O49255	NAC domain-containing protein 29	AT4G17980.1	NAC domain containing protein 71 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr5g084760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.215264.1.S1_at	B	B1S	POPTR_0019s13060	POPTR_0019s13060 (0:1400)	NA	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215270.1.S1_at	B	B1S	POPTR_0019s12790	POPTR_0019s12790 (1:418)	NA	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT3G59780.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g67120.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g105210.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215272.1.S1_x_at	B	B2S	POPTR_0019s12770	POPTR_0019s12780 (0:2350)//POPTR_0019s12770 (5:530)	NA	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	AT1G63860.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g54450.1	"retrotransposon protein, putative, unclassified"	Medtr2g121090.1	Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215288.1.S1_at	B	B1S	POPTR_0015s12730	POPTR_0015s12730 (8:42)	NA	NA	NA	NA	AT3G02690.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g35140.1	"integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215288.1.S1_x_at	B	B1S	POPTR_0015s12730	POPTR_0015s12730 (6:380)	NA	NA	NA	NA	AT3G02690.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g35140.1	"integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215293.1.S1_at	B	B1S	POPTR_0006s18540	POPTR_0006s18540 (8:392)	NA	NA	Q39261	Zinc finger protein 2	AT5G57520.1	zinc finger protein 2 	LOC_Os08g44190.1	"ZOS8-13 - C2H2 zinc finger protein, expressed"	Medtr8g128720.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.215303.1.S1_x_at	B	B13S	POPTR_0019s05920	POPTR_0001s27340 (1:793)//POPTR_0009s05880 (1:674)//POPTR_0278s00220 (2:673)//POPTR_0018s04940 (1:670)//POPTR_0002s22010 (0:670)//POPTR_0005s26060 (1:670)//POPTR_0006s15010 (0:440)//POPTR_0225s00210 (0:419)//POPTR_0001s18480 (3:419)//POPTR_0011s02690 (0:407)//POPTR_0019s05920 (4:396)//POPTR_0003s03110 (2:363)//POPTR_0007s10790 (3:244)	scaffold_1:5456155-5456829(-) (9)//scaffold_1:23306948-23307622(-) (9)//scaffold_1:41916353-41916885(+) (9)//scaffold_11:15809334-15810008(-) (9)//scaffold_31:319783-320457(-) (10)//scaffold_4:17283034-17283708(-) (11)//scaffold_6:16643012-16643683(+) (10)	NA	NA	NA	AT3G47680.1	DNA binding 	LOC_Os12g12690.1	"transposon protein, putative, Pong sub-class, expressed"	Medtr4g114770.1	"Homeodomain-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215308.1.S1_at	B	B4S	POPTR_0001s39470	POPTR_0001s39320 (0:1212)//POPTR_0001s39470 (5:1167)//POPTR_0001s39360 (0:1154)//POPTR_0001s39400 (0:1015)	NA	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215320.1.S1_at	B	B1S	POPTR_0005s16660	POPTR_0005s16660 (5:93)	NA	NA	Q9SGZ5	Probable beta-D-xylosidase 7	AT1G78060.1	Glycosyl hydrolase family protein 	LOC_Os02g51620.1	"glycosyl hydrolase family 3 protein, putative, expressed"	CU651566_9.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal CU651566.9 51724-46198 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.215321.1.S1_at	B	B1S	POPTR_0001s04900	POPTR_0001s04900 (1:39)	NA	NA	Q8LAP6	"Probable plastid-lipid-associated protein 12, chloroplastic"	AT1G51110.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os07g28790.1	"PAP fibrillin family domain containing protein, expressed"	Medtr1g146620.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.215337.1.S1_x_at	B	B13S	POPTR_0012s03230	POPTR_0012s03230 (7:387)//POPTR_0046s00360 (6:386)//POPTR_0046s00380 (4:386)//POPTR_0012s00530 (0:372)//POPTR_0012s00560 (1:372)//POPTR_0012s00500 (0:372)//POPTR_0046s00220 (4:351)//POPTR_0039s00360 (1:283)//POPTR_0012s00820 (1:175)//POPTR_0011s07975 (0:175)//POPTR_2303s00200 (4:175)//POPTR_1137s00200 (0:115)//POPTR_0012s00570 (2:86)	scaffold_2303:951-1337(+) (11)//scaffold_46:154155-162164(-) (9)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os01g06670.1	"hcr2-5D, putative, expressed"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.215347.1.S1_at	B	B1S	POPTR_0015s05690	POPTR_0015s05690 (8:403)	scaffold_15:6040552-6040980(-) (11)	NA	NA	NA	AT5G52870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g12640.2	expressed protein	Medtr1g126380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215375.1.S1_at	B	B1S	POPTR_0015s05260	POPTR_0015s05260 (7:1744)	scaffold_15:5628104-5629848(-) (9)	NA	Q9LR47	"Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2"	AT2G01900.1	DNAse I-like superfamily protein 	LOC_Os03g13520.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr1g046590.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215376.1.S1_at	B	B1S	POPTR_0015s05250	POPTR_0015s05250 (5:204)	scaffold_15:5616658-5618172(+) (10)	NA	NA	NA	AT1G18335.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g53260.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr6g076470.1	GCN5-related N-acetyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215409.1.S1_at	B	B1S	POPTR_0013s15190	POPTR_0013s15190 (4:359)	NA	NA	Q8BX32	Structure-specific endonuclease subunit SLX1	AT2G30350.2	"Excinuclease ABC, C subunit, N-terminal "	LOC_Os07g12710.1	"GIY-YIG catalytic domain containing protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004518|nuclease activity	GO:0005622|intracellular
PtpAffx.215416.1.S1_at	B	B2S	POPTR_0017s14580	POPTR_0017s14580 (4:506)//POPTR_0017s14570 (2:101)	NA	NA	NA	NA	NA	NA	LOC_Os06g16430.1	"FHA domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215444.1.S1_at	B	B2S	POPTR_0017s13890	POPTR_0004s10180 (0:3130)//POPTR_0017s13890 (3:1443)	scaffold_17:14080511-14083672(+) (10)	NA	NA	NA	AT5G38660.2	acclimation of photosynthesis to  environment 	LOC_Os08g27010.1	"APE1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215460.1.S1_at	B	B1S	POPTR_0005s15550	POPTR_0005s15550 (7:1845)	scaffold_5:12194780-12196801(-) (9)	NA	NA	NA	AT2G18410.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g10460.1	expressed protein	Medtr5g079110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215473.1.S1_s_at	B	B1S	POPTR_0024s00210	POPTR_0024s00210 (8:141)	scaffold_24:22961-23068(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215484.1.S1_at	B	B3S	POPTR_0011s04890	POPTR_0011s04870 (0:1010)//POPTR_0011s04860 (5:386)//POPTR_0011s04890 (8:212)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215526.1.S1_at	B	B1S	POPTR_0011s05610	POPTR_0011s05610 (8:876)	NA	NA	Q688X9	Protein DEHYDRATION-INDUCED 19	NA	NA	LOC_Os05g48800.2	"drought induced 19 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215531.1.S1_at	B	B1S	POPTR_0011s05710	POPTR_0011s05710 (1:334)	scaffold_11:5695775-5696432(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT1G28440.1	HAESA-like 1 	LOC_Os01g13800.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr2g018130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215553.1.S1_at	B	B1S	POPTR_0008s18360	POPTR_0008s18360 (7:574)	scaffold_2:11339286-11339856(-) (10)	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215557.1.S1_at	B	B2S	POPTR_0001s37050	POPTR_0026s00210 (0:200)//POPTR_0001s37050 (0:107)	NA	NA	NA	NA	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215628.1.S1_x_at	B	B2S	POPTR_0019s05420	POPTR_0019s05410 (0:168)//POPTR_0019s05420 (1:168)	NA	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g110860.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.215632.1.S1_at	B	B1S	POPTR_0003s14120	POPTR_0003s14120 (0:142)	NA	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT4G10950.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os02g18870.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g009110.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.215654.1.S1_x_at	B	B1S	POPTR_0001s08020	POPTR_0001s08020 (3:837)	scaffold_1:6081370-6082412(+) (10)	NA	Q9C5X3	SNARE-interacting protein KEULE	AT1G12360.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os02g25580.1	"Sec1 family transport protein, putative, expressed"	Medtr8g106730.1	Sec1-like protein 	GO:0006904|vesicle docking during exocytosis	NA	NA
PtpAffx.215681.1.S1_at	B	B1S	POPTR_0312s00210	POPTR_0312s00210 (0:95)	scaffold_312:12137-12486(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215696.1.S1_at	B	B1S	POPTR_0012s11700	POPTR_0012s11700 (6:126)	scaffold_12:12029580-12030068(+) (10)//scaffold_12:12084498-12084985(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215697.1.S1_at	B	B7S	POPTR_0017s01550	POPTR_0017s01630 (0:367)//POPTR_0017s01550 (0:365)//POPTR_0018s02660 (0:355)//POPTR_0017s01610 (0:328)//POPTR_0017s01600 (0:328)//POPTR_0017s01570 (0:327)//POPTR_0017s01590 (0:327)	NA	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr7g088340.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215701.1.S1_at	B	B1S	POPTR_0004s20890	POPTR_0004s20890 (0:310)	NA	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039490.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215701.1.S1_x_at	B	B1S	POPTR_0004s20890	POPTR_0004s20890 (0:355)	NA	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039490.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.215719.1.S1_at	B	B1S	POPTR_0015s14200	POPTR_0015s14200 (4:329)	NA	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215729.1.S1_at	B	B1S	POPTR_0015s07620	POPTR_0015s07620 (7:1187)	NA	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os05g51420.2	"hypersensitive-induced response protein, putative, expressed"	Medtr8g112900.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215743.1.S1_at	B	B1S	POPTR_0006s21000	POPTR_0006s21000 (0:336)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215763.1.S1_at	B	B1S	POPTR_0015s07040	POPTR_0015s07040 (8:1044)	NA	NA	P87061	Tip elongation aberrant protein 1	AT1G18610.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215805.1.S1_at	B	B1S	POPTR_0004s15120	POPTR_0004s15120 (8:398)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g129110.1	Blue (type 1) copper domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21583.1.S1_at	B	B1S	POPTR_0006s22440	POPTR_0006s22440 (7:169)	NA	NA	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT2G24280.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g43930.1	"OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.215938.1.S1_at	B	B9S	POPTR_0019s12400	POPTR_0019s12400 (8:1002)//POPTR_0019s12850 (2:1000)//POPTR_0144s00230 (5:998)//POPTR_0104s00230 (2:998)//POPTR_0019s12440 (2:997)//POPTR_0144s00240 (4:996)//POPTR_0086s00230 (3:996)//POPTR_0104s00200 (8:994)//POPTR_0019s12860 (2:991)	NA	NA	Q9LIG2	Receptor-like protein kinase At3g21340	AT4G29990.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44930.1	"receptor-like protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.215942.1.S1_at	B	B1A	POPTR_0008s22760	POPTR_0008s22760 (1:191)	scaffold_8:17552312-17553702(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215950.1.S1_at	B	B1S	POPTR_0008s21210	POPTR_0008s21210 (0:14)	NA	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215957.1.S1_at	B	B1S	POPTR_0008s22610	POPTR_0008s22610 (8:386)	scaffold_8:17233250-17233722(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215967.1.S1_at	B	B1S	POPTR_0005s23390	POPTR_0005s23390 (7:152)	NA	NA	Q9SPL5	Vicilin-like antimicrobial peptides 2-1	AT3G22640.1	cupin family protein 	LOC_Os03g46100.1	"cupin domain containing protein, expressed"	Medtr1g084050.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.215992.1.S1_at	B	B1S	POPTR_0005s02810	POPTR_0005s02810 (8:31)	NA	NA	O24645	Anthranilate N-benzoyltransferase protein 1	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.215997.1.S1_at	B	B1S	POPTR_0005s02680	POPTR_0005s02680 (5:426)	NA	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr8g138850.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216039.1.S1_at	B	B1S	POPTR_0107s00220	POPTR_0107s00220 (7:234)	scaffold_107:11310-11596(-) (11)	NA	B0YPN1	Photosystem Q(B) protein	ATCG00020.1	photosystem II reaction center protein A 	LOC_Os10g39880.1	"photosynthetic reaction center protein, putative"	Medtr1g106100.1	Photosynthetic reaction centre protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216046.1.S1_at	B	B2S	POPTR_0056s00220	POPTR_0056s00220 (2:287)//POPTR_0005s01610 (0:262)	scaffold_5:1091631-1092120(+) (9)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74180.1	receptor like protein 14 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.216066.1.S1_x_at	B	B5S	POPTR_0019s12650	POPTR_0019s12650 (5:390)//POPTR_2085s00200 (1:390)//POPTR_0001s06890 (0:381)//POPTR_0013s12270 (1:367)//POPTR_0019s12630 (4:183)	scaffold_19:13636240-13641180(+) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr8g148310.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216067.1.S1_at	B	B3S	POPTR_0019s12610	POPTR_0019s12660 (1:284)//POPTR_0019s12610 (6:211)//POPTR_0019s12640 (0:149)	NA	NA	NA	NA	AT2G43780.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g41760.1	conserved hypothetical protein	Medtr7g108270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216067.1.S1_x_at	B	B3S	POPTR_0019s12610	POPTR_0019s12610 (6:209)//POPTR_0019s12660 (3:169)//POPTR_0019s12640 (2:149)	NA	NA	NA	NA	AT2G43780.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g41760.1	conserved hypothetical protein	Medtr7g108270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216082.1.S1_x_at	B	B2S	POPTR_0001s42120	POPTR_0001s42120 (7:239)//POPTR_0016s01265 (7:186)	NA	NA	NA	NA	AT5G21990.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g06710.1	"tetratricopeptide repeat, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216090.1.S1_at	B	B1S	POPTR_0001s41910	POPTR_0001s41910 (7:223)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216105.1.S1_x_at	B	B1S	POPTR_0005s03200	POPTR_0005s03200 (3:583)	NA	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216107.1.S1_x_at	B	B7S	POPTR_0121s00220	POPTR_0121s00220 (8:556)//POPTR_0019s01380 (0:535)//POPTR_0019s01470 (1:535)//POPTR_0019s01400 (1:535)//POPTR_0019s01350 (4:532)//POPTR_0001s31280 (0:517)//POPTR_0019s01430 (0:504)	NA	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216113.1.S1_at	B	B2S	POPTR_0016s13270	POPTR_0016s13270 (8:402)//POPTR_0016s13260 (0:334)	scaffold_16:12472111-12472592(-) (10)	NA	Q8H1T3	"Ferritin-2, chloroplastic"	AT5G01600.1	ferretin 1 	LOC_Os12g01530.1	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr4g011930.1	Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
PtpAffx.216114.1.S1_x_at	B	B6S	POPTR_0065s00220	POPTR_0134s00210 (1:837)//POPTR_0001s45120 (1:834)//POPTR_0001s43490 (1:832)//POPTR_0065s00220 (5:820)//POPTR_0001s43473 (0:541)//POPTR_0001s43600 (1:355)	scaffold_1:43558213-43566700(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	NA	GO:0005515|protein binding	NA
PtpAffx.216138.1.S1_at	B	B1S	POPTR_0004s14690	POPTR_0004s14690 (2:171)	NA	NA	Q940Y1	Oxysterol-binding protein-related protein 2A	AT4G22540.1	OSBP(oxysterol binding protein)-related protein 2A 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216164.1.S1_at	B	B2S	POPTR_1137s00200	POPTR_1137s00200 (7:567)//POPTR_0012s00570 (3:567)	NA	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.216179.1.S1_at	B	B2S	POPTR_0007s14160	POPTR_0007s14140 (0:1143)//POPTR_0007s14160 (6:513)	NA	NA	NA	NA	AT2G22600.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr5g033090.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.216179.1.S1_x_at	B	B2S	POPTR_0007s14160	POPTR_0007s14140 (0:1143)//POPTR_0007s14160 (7:513)	NA	NA	NA	NA	AT2G22600.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr5g033090.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.216180.1.S1_at	B	B3S	POPTR_0004s24020	POPTR_0004s24000 (3:86)//POPTR_0004s24010 (3:86)//POPTR_0004s24020 (7:85)	scaffold_4:22685469-22685682(-) (10)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.216182.1.S1_s_at	B	B2S	POPTR_0013s13690	POPTR_0013s13690 (6:342)//POPTR_0013s13830 (5:342)	NA	NA	P16157	Ankyrin-1	AT1G03670.1	ankyrin repeat family protein 	LOC_Os07g34830.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g093150.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216200.1.S1_at	B	B1S	POPTR_0006s00330	POPTR_0006s00330 (0:260)	scaffold_16:90649-90905(-) (11)	NA	Q9LIQ7	"Pentatricopeptide repeat-containing protein At3g24000, mitochondrial"	AT3G24000.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g30760.1	"pentatricopeptide, putative"	Medtr1g008670.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21623.1.A1_at	B	B1S	POPTR_0001s07280	POPTR_0001s07280 (1:234)	NA	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216279.1.S1_x_at	B	B2S	POPTR_0011s00210	POPTR_0011s01400 (8:362)//POPTR_0011s00210 (8:362)	scaffold_11:977387-977749(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.216391.1.S1_at	B	B1S	POPTR_0013s13000	POPTR_0013s13000 (4:264)	NA	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216392.1.S1_at	B	B2S	POPTR_0013s12950	POPTR_0013s12950 (8:600)//POPTR_0013s12960 (4:462)	NA	NA	Q6AXX4	Something about silencing protein 10	AT2G43650.1	Sas10/U3 ribonucleoprotein (Utp) family protein 	LOC_Os01g01510.1	"sas10/Utp3 family protein, expressed"	Medtr4g128610.1	Sas10/Utp3 	GO:0016458|gene silencing	NA	GO:0005634|nucleus
PtpAffx.216410.1.S1_at	B	B3S	POPTR_0191s00230	POPTR_0013s14600 (0:1596)//POPTR_0191s00230 (8:1376)//POPTR_0013s14610 (0:857)	scaffold_191:32294-33670(-) (9)	NA	NA	NA	AT1G27410.1	DNA repair metallo-beta-lactamase family protein 	LOC_Os01g57440.1	"DNA repair metallo-beta-lactamase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216410.1.S1_x_at	B	B3S	POPTR_0191s00230	POPTR_0013s14600 (1:1596)//POPTR_0191s00230 (8:1402)//POPTR_0013s14610 (1:883)	scaffold_191:32292-33694(-) (9)	NA	NA	NA	AT1G27410.1	DNA repair metallo-beta-lactamase family protein 	LOC_Os01g57440.1	"DNA repair metallo-beta-lactamase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216412.1.S1_at	B	B1S	POPTR_0019s09870	POPTR_0019s09870 (3:187)	scaffold_19:11408682-11408865(+) (11)	NA	Q9FH83	Probable WRKY transcription factor 52	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.21642.2.S1_at	B	B3S	POPTR_0019s02950	POPTR_0019s02950 (4:378)//POPTR_0003s02110 (2:346)//POPTR_0019s06300 (2:346)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.21642.2.S1_x_at	B	B2S	POPTR_0019s02950	POPTR_0019s02950 (5:450)//POPTR_0003s02110 (1:418)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.216422.1.S1_at	B	B1S	POPTR_0007s05620	POPTR_0007s05620 (6:317)	NA	NA	Q9FJP9	"Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial"	AT5G65165.1	succinate dehydrogenase 2-3 	LOC_Os09g20440.1	succinate dehydrogenase and fumarate reductase iron-sulfur protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216480.1.S1_at	B	B4S	POPTR_0011s10651	POPTR_0011s10610 (0:2784)//POPTR_0011s10651 (7:2555)//POPTR_0081s00210 (0:2551)//POPTR_0011s10640 (0:2274)	NA	NA	Q9C9H7	Receptor-like protein 12	AT1G71400.1	receptor like protein 12 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.216497.1.S1_at	B	B1S	POPTR_0018s06910	POPTR_0018s06910 (6:332)	scaffold_18:7005578-7006146(+) (11)	NA	Q9SVP7	Pentatricopeptide repeat-containing protein At4g13650	AT4G13650.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g41650.1	"pentatricopeptide, putative, expressed"	Medtr8g118960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216503.1.S1_at	B	B1S	POPTR_0018s06715	POPTR_0018s06715 (6:543)	NA	NA	NA	NA	AT2G19790.1	SNARE-like superfamily protein 	NA	NA	Medtr7g118420.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216512.1.S1_s_at	B	B1S	POPTR_0344s00200	POPTR_0344s00200 (8:489)	NA	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT1G06840.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr3g083770.1	Protein kinase; Adipokinetic hormone 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.216574.1.S1_at	B	B2S	POPTR_0006s28880	POPTR_0006s28880 (5:811)//POPTR_0006s28840 (2:421)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216583.1.S1_at	B	B1S	POPTR_0006s29070	POPTR_0006s29070 (5:1147)	scaffold_6:26550616-26552086(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31550.1	"disease resistance protein RGA4, putative"	Medtr3g019390.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.216623.1.S1_at	B	B1S	POPTR_0001s23490	POPTR_0001s23490 (1:46)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216630.1.S1_at	B	B1S	POPTR_0001s23580	POPTR_0001s23580 (6:531)	NA	NA	Q39224	Protein SRG1	AT3G21420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os10g40880.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr5g067830.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.216642.1.S1_x_at	B	B1S	POPTR_0006s25650	POPTR_0006s25650 (2:1650)	NA	NA	NA	NA	AT5G62650.1	Tic22-like family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216644.1.S1_at	B	B2S	POPTR_0001s23780	POPTR_0009s02900 (0:2253)//POPTR_0001s23780 (8:703)	scaffold_1:23175897-23178314(+) (10)	NA	Q39055	Molybdopterin biosynthesis protein CNX2	AT2G31955.2	cofactor of nitrate reductase and xanthine dehydrogenase 2 	LOC_Os12g32230.1	"molybdenum cofactor biosynthesis protein 1, putative, expressed"	NA	NA	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	"GO:0003824|catalytic activity||GO:0051539|""4 iron, 4 sulfur cluster binding"""	GO:0019008|molybdopterin synthase complex
PtpAffx.216675.1.S1_at	B	B2S	POPTR_0001s22820	POPTR_0001s22820 (4:1276)//POPTR_0001s22840 (4:1272)	NA	NA	A7RWD2	Probable cytosolic iron-sulfur protein assembly protein	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216687.1.S1_at	B	B2S	POPTR_0001s01720	POPTR_0001s01720 (2:198)//POPTR_0001s01690 (0:164)	scaffold_1:2999495-2999693(-) (11)	NA	NA	NA	AT5G45610.1	protein dimerizations 	NA	NA	Medtr5g028070.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216700.1.S1_x_at	B	B11S	POPTR_0008s18640	POPTR_0025s00710 (0:273)//POPTR_0018s14180 (1:273)//POPTR_0019s02830 (1:243)//POPTR_0008s18640 (2:243)//POPTR_0019s02860 (0:243)//POPTR_0008s18550 (0:243)//POPTR_0018s14150 (1:243)//POPTR_0008s18470 (1:243)//POPTR_0003s04290 (0:243)//POPTR_0003s04260 (0:243)//POPTR_0008s18680 (1:241)	NA	NA	Q9ZPS9	Serine/threonine-protein kinase BRI1-like 2	AT1G07390.2	receptor like protein 1 	LOC_Os06g04830.1	"leucine rich repeat protein, putative, expressed"	AC233100_74.1	Leucine-rich repeat AC233100.6 329525-327081 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.216701.1.S1_s_at	B	B2S	POPTR_0011s05810	POPTR_0011s05830 (4:588)//POPTR_0011s05810 (5:339)	NA	NA	Q8S985	Auxin response factor 15	AT2G33860.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os05g48870.1	"auxin response factor 15, putative, expressed"	Medtr2g018270.1	Transcriptional factor B3; Auxin response factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216710.1.S1_at	B	B1S	POPTR_0003s00930	POPTR_0003s00930 (8:420)	NA	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.216716.1.S1_at	B	B1S	POPTR_0022s00250	POPTR_0022s00250 (8:2710)	NA	NA	NA	NA	AT4G18530.1	Protein of unknown function (DUF707) 	LOC_Os01g69050.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g005170.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216723.1.S1_at	B	B1S	POPTR_0022s00440	POPTR_0022s00440 (4:397)	scaffold_22:148503-148694(+) (9)	NA	NA	NA	AT1G09645.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g34680.2	expressed protein	Medtr4g033000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216727.1.S1_at	B	B1S	POPTR_0022s00550	POPTR_0022s00550 (3:856)	scaffold_22:223314-226676(+) (10)	NA	NA	NA	AT4G24290.2	MAC/Perforin domain-containing protein 	LOC_Os07g07194.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr2g005520.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216736.1.S1_at	B	B1S	POPTR_0010s05665	POPTR_0010s05665 (4:222)	scaffold_10:7130629-7131069(+) (10)	NA	NA	NA	AT3G21000.1	Gag-Pol-related retrotransposon family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216779.1.S1_at	B	B1S	POPTR_0006s05610	POPTR_0006s05610 (8:1850)	NA	NA	Q9C7D7	Protein cornichon homolog 1	AT3G12180.1	Cornichon family protein 	LOC_Os12g32180.1	"cornichon protein, putative, expressed"	Medtr7g111190.1	Cornichon 	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	GO:0016020|membrane
PtpAffx.216787.1.S1_x_at	B	B3S	POPTR_0006s05790	POPTR_0009s03110 (4:274)//POPTR_0006s05790 (5:272)//POPTR_0006s12880 (4:261)	NA	NA	NA	NA	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216794.1.S1_at	B	B1S	POPTR_0006s06080	POPTR_0006s06080 (5:1838)	NA	NA	NA	NA	AT2G11890.1	adenylate cyclases 	LOC_Os08g20400.1	"adenylate cyclase family protein, expressed"	Medtr8g122220.1	Adenylate cyclase 	GO:0044281|small molecule metabolic process||GO:0006171|cAMP biosynthetic process	GO:0004016|adenylate cyclase activity	NA
PtpAffx.216848.1.S1_at	B	B1S	POPTR_0001s33810	POPTR_0001s33810 (4:80)	NA	NA	Q42602	Cytochrome P450 89A2	AT1G64940.1	"cytochrome P450, family 87, subfamily A, polypeptide 6 "	LOC_Os06g22340.1	"cytochrome P450, putative, expressed"	Medtr2g010280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.216858.1.S1_x_at	B	B2S	POPTR_0017s11660	POPTR_0017s11660 (5:150)//POPTR_0017s11650 (2:126)	NA	NA	Q5EA79	Aldose 1-epimerase	AT3G47800.1	Galactose mutarotase-like superfamily protein 	LOC_Os02g36600.1	"aldose 1-epimerase, putative, expressed"	Medtr7g009340.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.216881.1.S1_x_at	B	B3S	POPTR_0001s45330	POPTR_0002s14270 (3:355)//POPTR_0003s11270 (6:246)//POPTR_0001s45330 (7:246)	NA	NA	Q7XDC8	"Malate dehydrogenase, cytoplasmic"	AT5G56720.1	Lactate/malate dehydrogenase family protein 	LOC_Os10g33800.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr8g005780.1	"Malate dehydrogenase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216906.1.S1_s_at	B	B1S	POPTR_0017s13500	POPTR_0017s13500 (0:32)	NA	NA	Q9SIR9	Serpin-Z10	AT2G25240.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41419.1	"serpin domain containing protein, putative, expressed"	Medtr7g047230.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216920.1.S1_at	B	B3S	POPTR_0017s13770	POPTR_0035s00410 (8:32)//POPTR_0017s14590 (8:32)//POPTR_0017s13770 (8:32)	NA	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.216949.1.S1_x_at	B	B5S	POPTR_0010s04030	POPTR_0010s04030 (5:972)//POPTR_0010s03755 (0:773)//POPTR_0013s10833 (0:278)//POPTR_0032s00210 (0:258)//POPTR_0024s00720 (0:165)	scaffold_7:8124351-8126020(+) (10)	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.216952.1.S1_x_at	B	B1A	POPTR_0009s00200	POPTR_0009s00200 (6:69)	scaffold_7:8193636-8193715(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216955.1.S1_x_at	B	B2S	POPTR_0020s00380	POPTR_0020s00380 (7:236)//POPTR_0010s03045 (3:209)	scaffold_2:20541322-20541420(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216964.1.S1_at	B	B1S	POPTR_0001s21465	POPTR_0001s21465 (7:820)	NA	NA	NA	NA	NA	NA	LOC_Os04g40450.1	"retrotransposon protein, putative, unclassified"	Medtr8g044140.1	"Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216967.1.S1_at	B	B2S	POPTR_0002s10780	POPTR_0002s10780 (7:152)//POPTR_0019s04440 (2:148)	NA	NA	Q9FJ17	Protein DEHYDRATION-INDUCED 19 homolog 7	AT5G49230.1	Drought-responsive family protein 	LOC_Os05g28980.2	"drought induced 19 protein, putative, expressed"	Medtr1g100290.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216978.1.S1_at	B	B2S	POPTR_0006s16180	POPTR_0006s16180 (6:341)//POPTR_0006s16200 (3:191)	scaffold_6:14097695-14102802(-) (9)	NA	Q9SMV7	DNA mismatch repair protein Msh6-2	AT3G24495.1	MUTS homolog 7 	LOC_Os01g08540.1	"DNA mismatch repair protein MSH6-2, putative, expressed"	Medtr6g101960.1	"DNA mismatch repair protein, eukaryotic MSH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216981.1.S1_x_at	B	B2S	POPTR_0110s00200	POPTR_0006s16280 (3:1256)//POPTR_0110s00200 (6:1211)	NA	NA	Q8VXZ0	"Nudix hydrolase 20, chloroplastic"	AT5G19460.1	nudix hydrolase homolog 20 	LOC_Os09g15340.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.216992.1.S1_at	B	B1S	POPTR_0607s00210	POPTR_0607s00210 (6:273)	NA	NA	NA	NA	AT3G09140.2	Protein of unknown function (DUF674) 	LOC_Os01g06070.1	conserved hypothetical protein	Medtr2g085320.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216999.1.S1_s_at	B	B2S	POPTR_0010s25590	POPTR_0008s01010 (6:667)//POPTR_0010s25590 (8:299)	scaffold_10:21195419-21195876(+) (11)	NA	P52706	(R)-mandelonitrile lyase 1	AT1G73050.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os06g44540.1	"HOTHEAD precursor, putative, expressed"	Medtr4g023240.1	Alcohol oxidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2170.3.S1_at	B	B1S	POPTR_0004s01510	POPTR_0004s01510 (2:257)	NA	NA	Q9SB81	Peroxidase 42	AT4G21960.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr8g146760.2	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.217000.1.S1_at	B	B1S	POPTR_0001s39470	POPTR_0001s39470 (5:263)	NA	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217037.1.S1_at	B	B1S	POPTR_0001s16570	POPTR_0001s16570 (7:303)	scaffold_1:13335695-13342801(+) (10)	NA	NA	NA	AT3G14170.1	Plant protein of unknown function (DUF936) 	LOC_Os03g08390.2	expressed protein	Medtr4g092550.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21705.1.S1_at	B	B1S	POPTR_0069s00210	POPTR_0069s00210 (7:182)	scaffold_11:855666-856011(-) (10)//scaffold_11:943359-943578(-) (9)//scaffold_4:22579557-22579896(+) (11)//scaffold_69:36239-36599(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217071.1.S1_at	B	B1S	POPTR_0026s00250	POPTR_0026s00250 (3:116)	scaffold_26:289246-289579(-) (11)	NA	NA	NA	AT4G15802.1	heat shock factor binding protein 	NA	NA	Medtr1g108620.1	Heat shock factor binding 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217083.1.S1_at	B	B2S	POPTR_0001s27290	POPTR_0001s27290 (6:467)//POPTR_0001s27270 (5:433)	NA	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217099.1.S1_at	B	B1S	POPTR_0001s20900	POPTR_0001s20900 (4:572)	NA	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os03g52310.1	"transposon protein, putative, unclassified, expressed"	AC235022_16.1	"Zinc finger, BED-type predicted AC235022.1 101864-97385 E EGN_Mt090430 200"	GO:0030855|epithelial cell differentiation||GO:0030216|keratinocyte differentiation	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	GO:0001533|cornified envelope
PtpAffx.21710.2.A1_at	B	B1S	POPTR_0005s00910	POPTR_0005s00910 (7:589)	NA	NA	O48920	ADP-ribosylation factor	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.21710.4.S1_at	B	B1S	POPTR_0005s00920	POPTR_0005s00920 (8:170)	NA	NA	P51823	ADP-ribosylation factor 2	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os05g41060.1	"ADP-ribosylation factor, putative, expressed"	Medtr1g106180.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.217110.1.S1_at	B	B1S	POPTR_0008s21815	POPTR_0008s21815 (0:186)	scaffold_16:10128631-10128857(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217132.1.S1_at	B	B1S	POPTR_0049s00220	POPTR_0049s00220 (0:482)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os09g14060.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.217140.1.S1_at	B	B1S	POPTR_0002s26300	POPTR_0002s26300 (8:57)	NA	NA	P34795	"Glucose-6-phosphate isomerase, cytosolic"	AT5G42740.1	Sugar isomerase (SIS) family protein 	LOC_Os06g14510.3	"glucose-6-phosphate isomerase, putative, expressed"	Medtr6g009990.1	Phosphoglucose isomerase (PGI) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217142.1.S1_x_at	B	B9S	POPTR_0017s13730	POPTR_0035s00335 (0:5744)//POPTR_0035s00341 (0:833)//POPTR_0017s14620 (0:414)//POPTR_0117s00210 (0:411)//POPTR_0035s00260 (0:388)//POPTR_0035s00400 (0:386)//POPTR_0017s13730 (0:369)//POPTR_0035s00200 (0:324)//POPTR_0017s14630 (0:215)	scaffold_35:72166-72403(-) (9)	NA	Q40392	TMV resistance protein N	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.217166.1.S1_x_at	B	B3S	POPTR_0016s11330	POPTR_0016s11330 (1:1233)//POPTR_2452s00010 (0:379)//POPTR_0127s00210 (0:323)	scaffold_32:36892-38144(+) (10)	NA	NA	NA	NA	NA	LOC_Os06g25820.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.217266.1.S1_at	B	B1S	POPTR_0018s14500	POPTR_0018s14500 (8:60)	NA	NA	Q9C9L5	Wall-associated receptor kinase-like 9	AT1G69730.1	Wall-associated kinase family protein 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	AC147501_3.1	Tyrosine protein kinase AC147501.9 8841-5950 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217267.1.S1_at	B	B3S	POPTR_0126s00200	POPTR_0018s14500 (0:369)//POPTR_0126s00230 (1:369)//POPTR_0126s00200 (1:369)	NA	NA	Q8VYA3	Wall-associated receptor kinase-like 10	AT1G79680.1	WALL ASSOCIATED KINASE (WAK)-LIKE 10 	LOC_Os04g51050.1	"OsWAK53b - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217278.1.S1_at	B	B1S	POPTR_0018s14370	POPTR_0018s14370 (4:268)	scaffold_18:14597659-14598209(-) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G24370.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os02g54590.1	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217287.1.S1_x_at	B	B5S	POPTR_0008s18560	POPTR_0012s10980 (0:92)//POPTR_0008s18560 (1:80)//POPTR_0018s14430 (1:80)//POPTR_0008s18690 (1:80)//POPTR_0018s14190 (1:79)	NA	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217311.1.S1_at	B	B1S	POPTR_0004s11280	POPTR_0004s11280 (8:762)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217329.1.S1_at	B	B1S	POPTR_0535s00220	POPTR_0535s00220 (3:310)	scaffold_1092:2895-3326(+) (9)//scaffold_12:1511699-1512130(+) (10)	NA	NA	NA	NA	NA	LOC_Os11g02590.1	"retrotransposon protein, putative, unclassified"	Medtr2g092710.1	"Putative Ty3-gypsy-like retroelement pol polyprotein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217333.1.S1_at	B	B1S	POPTR_0004s07570	POPTR_0004s07570 (6:616)	NA	NA	Q00416	Helicase SEN1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g51090.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217340.1.S1_at	B	B1S	POPTR_0007s11800	POPTR_0007s11800 (4:309)	scaffold_7:12186428-12186793(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217359.1.S1_at	B	B1S	POPTR_0004s00770	POPTR_0004s00770 (4:757)	scaffold_4:344269-353496(+) (10)	NA	Q15652	Probable JmjC domain-containing histone demethylation protein 2C	AT1G11950.1	Transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os03g31594.1	"jmjC domain containing protein, expressed"	Medtr8g147200.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21741.1.S1_at	B	B1S	POPTR_0002s16320	POPTR_0002s16320 (8:272)	NA	NA	NA	NA	AT4G00310.2	Putative membrane lipoprotein 	NA	NA	Medtr3g019620.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217411.1.S1_s_at	B	B1A	POPTR_0006s06470	POPTR_0006s06470 (8:100)	scaffold_4:11998762-11998867(+) (11)//scaffold_4:12073084-12073189(+) (11)	NA	NA	NA	AT3G53270.5	"Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein "	LOC_Os10g35130.1	expressed protein	Medtr8g121380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217413.1.S1_at	B	B1S	POPTR_0001s19520	POPTR_0001s19520 (6:425)	NA	NA	NA	NA	AT1G73020.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF590 (InterPro:IPR007632). 	LOC_Os01g51040.1	"transmembrane protein 16K, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217420.1.S1_at	B	B1S	POPTR_0052s00210	POPTR_0052s00210 (8:706)	scaffold_52:93295-94158(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217430.1.S1_s_at	B	B1A	POPTR_0017s10120	POPTR_0017s10120 (8:115)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217462.1.S1_x_at	B	B4S	POPTR_0011s01820	POPTR_0005s17490 (6:281)//POPTR_0011s01820 (7:281)//POPTR_0017s05230 (6:281)//POPTR_0011s10370 (6:280)	NA	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217464.1.S1_at	B	B2S	POPTR_0011s10340	POPTR_0001s38980 (0:970)//POPTR_0011s10340 (5:934)	NA	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT1G78530.1	Protein kinase superfamily protein 	LOC_Os01g14510.1	"BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed"	Medtr5g026640.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217508.1.S1_at	B	B1S	POPTR_0008s21700	POPTR_0008s21700 (7:207)	scaffold_8:15861397-15861919(+) (11)	NA	O05000	NADH-ubiquinone oxidoreductase chain 2	ATMG01320.1	NADH dehydrogenase 2B 	NA	NA	Medtr1g007140.1	NADH/Ubiquinone/plastoquinone (complex I) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217509.1.S1_at	B	B1S	POPTR_0008s21760	POPTR_0008s21760 (3:350)	scaffold_8:15921341-15922385(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.217527.1.S1_at	B	B1S	POPTR_0002s13760	POPTR_0002s13760 (5:289)	NA	NA	Q0WRJ7	"FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic"	AT3G60370.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217531.1.S1_at	B	B2S	POPTR_0017s00470	POPTR_0017s00470 (7:317)//POPTR_0017s00450 (1:267)	scaffold_17:167300-168070(-) (10)	NA	O49621	MLO-like protein 1	AT4G02600.2	Seven transmembrane MLO family protein 	LOC_Os05g34550.1	"MLO domain containing protein, putative, expressed"	Medtr3g163760.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.217551.1.S1_s_at	B	B1S	POPTR_0017s03650	POPTR_0017s03650 (8:31)	NA	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.217587.1.S1_at	B	B1S	POPTR_0018s10370	POPTR_0018s10370 (0:324)	NA	NA	A2AJL3	FGGY carbohydrate kinase domain-containing protein	AT4G30310.2	FGGY family of carbohydrate kinase 	LOC_Os02g08130.3	"FGGY family of carbohydrate kinases, putative, expressed"	Medtr8g128490.1	"Carbohydrate kinase, FGGY "	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.217602.1.S1_at	B	B1S	POPTR_0004s04950	POPTR_0004s04950 (8:232)	scaffold_4:3716822-3717105(+) (10)	NA	Q9SKN5	Auxin response factor 10	AT2G28350.1	auxin response factor 10 	LOC_Os06g47150.3	"auxin response factor 18, putative, expressed"	Medtr2g110140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21763.1.S1_at	B	B1S	POPTR_0010s25050	POPTR_0010s25050 (8:564)	NA	NA	NA	NA	AT2G36540.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g01850.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g071320.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217642.1.S1_at	B	B1A	POPTR_0001s19520	POPTR_0001s19520 (7:463)	NA	NA	NA	NA	AT1G73020.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF590 (InterPro:IPR007632). 	LOC_Os01g51040.1	"transmembrane protein 16K, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217684.1.S1_x_at	B	B6S	POPTR_0001s44830	POPTR_0005s28430 (1:386)//POPTR_0001s44830 (1:376)//POPTR_0036s00205 (0:376)//POPTR_0019s11750 (1:376)//POPTR_0005s01140 (1:376)//POPTR_0004s15690 (1:376)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217686.1.S1_at	B	B1S	POPTR_0011s12210	POPTR_0011s12210 (8:442)	NA	NA	Q8L7H1	F-box/LRR-repeat protein At4g14103	AT4G14103.1	F-box/RNI-like superfamily protein 	LOC_Os04g13160.1	"OsFBD9 - F-box and FBD domain containing protein, expressed"	Medtr4g110360.1	Cyclin-like F-box; FBD; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217705.1.S1_x_at	B	B1S	POPTR_0028s00410	POPTR_0028s00410 (8:292)	NA	NA	P0CC93	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr1g108390.1	NADH/Ubiquinone/plastoquinone (complex I) 	GO:0042773|ATP synthesis coupled electron transport	GO:0008137|NADH dehydrogenase (ubiquinone) activity	NA
PtpAffx.217728.1.S1_at	B	B2S	POPTR_0001s39930	POPTR_0001s39930 (2:245)//POPTR_0001s39690 (1:230)	scaffold_1:39056019-39056264(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217733.1.S1_at	B	B1S	POPTR_0001s39530	POPTR_0001s39530 (5:773)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217733.1.S1_x_at	B	B1S	POPTR_0001s39530	POPTR_0001s39530 (6:773)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217759.1.S1_at	B	B2S	POPTR_0002s22910	POPTR_0014s13330 (0:135)//POPTR_0002s22910 (8:135)	NA	NA	NA	NA	AT2G48060.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os01g29230.1	expressed protein	Medtr1g111530.1	"Fibronectin, type III-like fold, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217783.1.S1_s_at	B	B1S	POPTR_0019s04370	POPTR_0019s04370 (2:462)	NA	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217798.1.S1_s_at	B	B1S	POPTR_0014s01130	POPTR_0014s01130 (4:1080)	NA	NA	Q08A71	Probable protein arginine N-methyltransferase 6	AT3G20020.1	protein arginine methyltransferase 6 	LOC_Os04g58060.2	"methyltransferase, putative, expressed"	Medtr1g046940.1	"Probable protein arginine N-methyltransferase 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217803.1.S1_at	B	B2S	POPTR_0014s00460	POPTR_0014s00460 (8:664)//POPTR_0014s01160 (8:643)	NA	NA	NA	NA	AT1G16770.1	unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g04780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217807.1.S1_at	B	B2S	POPTR_0014s00490	POPTR_0014s00490 (7:811)//POPTR_0014s01190 (7:805)	NA	NA	Q9FKG6	U-box domain-containing protein 52	AT1G16760.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os06g09230.2	"serine threonine kinase, putative, expressed"	Medtr3g133090.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.217829.1.S1_at	B	B1S	POPTR_0007s09270	POPTR_0007s09270 (2:422)	NA	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G66060.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr5g022950.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.217833.1.S1_x_at	B	B1A	POPTR_0017s10440	POPTR_0017s10440 (0:1353)	scaffold_7:8418040-8418188(+) (10)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217915.1.S1_s_at	B	B1S	POPTR_0004s06800	POPTR_0004s06800 (0:933)	NA	NA	O81242	DNA-binding protein RHL1	AT1G48380.1	root hair initiation protein root hairless 1 (RHL1) 	LOC_Os07g07580.3	"ROOT HAIRLESS 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217920.1.S1_at	B	B1S	POPTR_0017s03350	POPTR_0017s03350 (0:164)	NA	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g29790.1	"receptor kinase, putative"	Medtr5g026330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.217922.1.S1_at	B	B1S	POPTR_0017s03360	POPTR_0017s03360 (4:78)	scaffold_17:2465374-2465547(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217946.1.S1_at	B	B3S	POPTR_0554s00200	POPTR_0125s00210 (0:240)//POPTR_0554s00200 (8:240)//POPTR_0017s13130 (0:240)	NA	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os03g21540.1	"TKL_IRAK_CrRLK1L-1.8 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr5g049180.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217946.1.S1_x_at	B	B4S	POPTR_0554s00200	POPTR_0554s00200 (8:488)//POPTR_0017s13130 (2:488)//POPTR_0125s00210 (2:485)//POPTR_0017s13160 (0:363)	NA	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os03g21540.1	"TKL_IRAK_CrRLK1L-1.8 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr5g049180.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217976.1.S1_x_at	B	B1S	POPTR_0002s01460	POPTR_0002s01460 (5:763)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218010.1.S1_at	B	B2S	POPTR_0005s02820	POPTR_0005s02820 (6:349)//POPTR_0005s02810 (0:346)	NA	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.218024.1.S1_at	B	B1S	POPTR_0011s05980	POPTR_0011s05980 (8:417)	scaffold_11:5997117-5998055(-) (11)	NA	Q6X7J4	WUSCHEL-related homeobox 9	AT2G33880.1	homeobox-3 	LOC_Os05g48990.1	"homeobox domain containing protein, expressed"	Medtr2g018480.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.218039.1.S1_at	B	B1S	POPTR_0016s10540	POPTR_0016s10540 (6:689)	NA	NA	Q9CPY6	Uncharacterized protein C17orf39 homolog	AT2G37680.1	CONTAINS InterPro DOMAIN/s: Vacuolar import/degradation protein Vid24 (InterPro:IPR018618); Has 318 Blast hits to 317 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 184; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g47550.2	expressed protein	Medtr4g018080.1	"Uncharacterized protein C17orf39, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218041.1.S1_at	B	B1S	POPTR_0015s06640	POPTR_0015s06640 (6:375)	scaffold_15:7587151-7597064(-) (10)	NA	NA	NA	AT5G23040.1	Protein of unknown function (DUF3353) 	LOC_Os09g21250.1	expressed protein	Medtr8g115580.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218072.1.S1_x_at	B	B4S	POPTR_0011s07950	POPTR_0011s07950 (7:624)//POPTR_0012s03200 (0:452)//POPTR_0046s00240 (5:435)//POPTR_0012s03190 (0:190)	NA	NA	NA	NA	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.2	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218084.1.S1_at	B	B3S	POPTR_0001s39455	POPTR_0001s39320 (4:414)//POPTR_0001s39455 (6:413)//POPTR_0001s39360 (4:411)	NA	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.218126.1.S1_x_at	B	B3S	POPTR_0006s25650	POPTR_0006s25650 (1:1650)//POPTR_0490s00205 (0:157)//POPTR_0010s09045 (0:140)	NA	NA	NA	NA	AT5G62650.1	Tic22-like family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218148.1.S1_at	B	B1S	POPTR_0001s43770	POPTR_0001s43770 (0:89)	NA	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218148.1.S1_x_at	B	B2S	POPTR_0010s03225	POPTR_0011s01730 (0:233)//POPTR_0010s03225 (0:218)	NA	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218179.1.S1_at	B	B1S	POPTR_0018s04130	POPTR_0018s04130 (6:201)	NA	NA	NA	NA	AT2G24360.1	Protein kinase superfamily protein 	LOC_Os04g51950.1	"serine/threonine-protein kinase HT1, putative, expressed"	Medtr3g040790.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21819.5.S1_at	B	B1S	POPTR_0001s36870	POPTR_0001s36870 (5:486)	scaffold_1:35627537-35628096(-) (10)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G30360.1	Early-responsive to dehydration stress protein (ERD4) 	LOC_Os07g05570.1	"ERD4 protein, putative, expressed"	Medtr2g022330.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.218193.1.S1_at	B	B1S	POPTR_0002s24930	POPTR_0002s24930 (5:290)	NA	NA	Q06915	"Probable glucan endo-1,3-beta-glucosidase A6"	AT3G07320.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os09g32550.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g012760.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.218232.1.S1_x_at	B	B1S	POPTR_0002s12280	POPTR_0002s12280 (0:531)	scaffold_2:9075734-9076257(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g009400.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.218254.1.S1_at	B	B2S	POPTR_0009s16820	POPTR_0009s16790 (6:145)//POPTR_0009s16820 (7:145)	NA	NA	Q7X9B9	Protein NLP2	AT4G35270.1	Plant regulator RWP-RK family protein 	LOC_Os03g03900.1	"NIN, putative, expressed"	Medtr5g106690.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218299.1.S1_at	B	B2S	POPTR_0019s04440	POPTR_0019s04440 (6:551)//POPTR_0002s10780 (5:551)	NA	NA	Q9FJ17	Protein DEHYDRATION-INDUCED 19 homolog 7	AT5G49230.1	Drought-responsive family protein 	LOC_Os05g28980.1	"drought induced 19 protein, putative, expressed"	Medtr1g100290.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218304.1.S1_x_at	B	B3S	POPTR_0048s00275	POPTR_0048s00275 (2:146)//POPTR_0002s12900 (0:133)//POPTR_0017s05420 (1:109)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g148000.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218306.1.S1_at	B	B2S	POPTR_0005s03490	POPTR_0005s03490 (3:344)//POPTR_0005s03070 (1:339)	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218306.1.S1_x_at	B	B1S	POPTR_0005s03490	POPTR_0005s03490 (4:468)	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218314.1.S1_at	B	B1S	POPTR_0016s03200	POPTR_0016s03200 (8:687)	scaffold_16:1635689-1636613(+) (9)	NA	Q6R8G7	Phosphate transporter PHO1 homolog 3	AT1G14040.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218366.1.S1_s_at	B	B2S	POPTR_0012s11900	POPTR_0012s11900 (7:1377)//POPTR_0015s15800 (0:1350)	NA	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.218375.1.S1_at	B	B1S	POPTR_0012s12130	POPTR_0012s12130 (8:62)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218376.1.S1_at	B	B2S	POPTR_0012s12180	POPTR_0012s15230 (2:178)//POPTR_0012s12180 (2:175)	NA	NA	O48651	Squalene monooxygenase	AT4G37760.1	squalene epoxidase 3 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.218376.1.S1_x_at	B	B2S	POPTR_0012s12180	POPTR_0012s15230 (4:178)//POPTR_0012s12180 (4:175)	NA	NA	O48651	Squalene monooxygenase	AT4G37760.1	squalene epoxidase 3 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.218387.1.S1_at	B	B1S	POPTR_0013s09360	POPTR_0013s09360 (7:322)	scaffold_13:9043665-9050041(-) (10)//scaffold_13:9049851-9050341(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218388.1.S1_at	B	B1A	POPTR_0063s00220	POPTR_0063s00220 (0:370)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218417.1.S1_s_at	B	B2S	POPTR_0013s12530	POPTR_0191s00220 (8:90)//POPTR_0013s12530 (8:90)	NA	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os02g27070.2	"PPR repeat domain containing protein, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218435.1.S1_x_at	B	B1S	POPTR_0028s00410	POPTR_0028s00410 (7:318)	NA	NA	P0CC93	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr1g108390.1	NADH/Ubiquinone/plastoquinone (complex I) 	GO:0042773|ATP synthesis coupled electron transport	GO:0008137|NADH dehydrogenase (ubiquinone) activity	NA
PtpAffx.218469.1.S1_at	B	B1S	POPTR_0016s11910	POPTR_0016s11910 (0:534)	NA	NA	Q9SS81	Pentatricopeptide repeat-containing protein At3g09060	AT3G09060.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g63400.2	"PPR repeat containing protein, expressed"	Medtr8g112280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218609.1.S1_x_at	B	B1S	POPTR_0001s03490	POPTR_0001s03490 (6:988)	scaffold_1:2812223-2816473(-) (10)	NA	NA	NA	AT1G16000.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g36930.1	expressed protein	Medtr4g021670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218613.1.S1_at	B	B3S	POPTR_0001s03590	POPTR_0003s18080 (0:1859)//POPTR_0001s03590 (8:611)//POPTR_0001s03580 (3:207)	scaffold_1:2864470-2867106(+) (11)	NA	NA	NA	AT1G80860.1	phospholipid N-methyltransferase 	LOC_Os02g39880.1	expressed protein	Medtr4g022030.1	Phospholipid methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218623.1.S1_x_at	B	B3S	POPTR_0008s21970	POPTR_0008s21970 (8:529)//POPTR_0003s02865 (0:498)//POPTR_0004s06250 (3:479)	scaffold_7:7356781-7357310(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g42170.1	zinc knuckle family protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.218641.1.S1_at	B	B2S	POPTR_0013s03410	POPTR_0013s03410 (6:1345)//POPTR_0013s03580 (0:569)	NA	NA	NA	NA	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os12g41230.3	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218691.1.S1_at	B	B1S	POPTR_0010s04010	POPTR_0010s04010 (0:282)	NA	NA	B0YPN8	Ribulose bisphosphate carboxylase large chain	ATCG00490.1	ribulose-bisphosphate carboxylases 	LOC_Os10g21268.1	"ribulose bisphosphate carboxylase large chain precursor, putative, expressed"	Medtr7g021740.1	"Ribulose bisphosphate carboxylase, large chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
PtpAffx.218719.1.S1_at	B	B4S	POPTR_0017s13770	POPTR_0043s00260 (4:1892)//POPTR_0017s14590 (4:1891)//POPTR_0017s13770 (4:1891)//POPTR_0043s00290 (3:1744)	NA	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.218725.1.S1_x_at	B	B3S	POPTR_0017s14630	POPTR_0011s16050 (1:820)//POPTR_0017s14630 (8:795)//POPTR_0001s46490 (0:792)	NA	NA	O64747	Probable WRKY transcription factor 35	AT2G34830.1	WRKY DNA-binding protein 35 	LOC_Os02g47060.1	"OsWRKY66 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088890.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.218821.1.S1_at	B	B2S	POPTR_0049s00220	POPTR_0049s00220 (5:200)//POPTR_0013s06620 (3:169)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os09g14060.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218821.1.S1_x_at	B	B2S	POPTR_0049s00220	POPTR_0049s00220 (5:871)//POPTR_0013s06620 (2:169)	scaffold_13:5258399-5259293(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os09g14060.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218824.1.S1_at	B	B9S	POPTR_0001s43820	POPTR_0001s45070 (0:637)//POPTR_0001s42470 (0:636)//POPTR_0049s00230 (0:617)//POPTR_0001s43690 (0:602)//POPTR_0001s43800 (0:593)//POPTR_0001s47840 (0:586)//POPTR_0001s43710 (2:567)//POPTR_0001s42395 (0:559)//POPTR_0001s43820 (3:451)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr7g105090.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218824.1.S1_x_at	B	B9S	POPTR_0001s43820	POPTR_0001s45070 (0:637)//POPTR_0001s42470 (0:636)//POPTR_0049s00230 (0:617)//POPTR_0001s43690 (0:602)//POPTR_0001s43800 (0:593)//POPTR_0001s47840 (0:586)//POPTR_0001s43710 (2:567)//POPTR_0001s42395 (0:559)//POPTR_0001s43820 (5:451)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr7g105090.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218855.1.S1_at	B	B1S	POPTR_0011s06400	POPTR_0011s06400 (8:130)	scaffold_11:6663232-6664290(-) (9)	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.218855.1.S1_x_at	B	B7S	POPTR_0011s06400	POPTR_0011s06400 (8:2147)//POPTR_0011s06560 (0:1681)//POPTR_0011s06420 (1:1278)//POPTR_0011s08010 (1:1274)//POPTR_0011s06160 (0:1113)//POPTR_0011s06630 (0:588)//POPTR_0011s06640 (1:439)	scaffold_11:6661958-6664290(-) (9)	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.218875.1.S1_x_at	B	B1S	POPTR_0049s00220	POPTR_0049s00220 (1:363)	scaffold_1:42378471-42379040(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os09g14060.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218887.1.S1_at	B	B1S	POPTR_0010s01360	POPTR_0010s01360 (7:203)	NA	NA	Q00917	Sucrose synthase 2	AT5G49190.1	sucrose synthase 2 	LOC_Os03g22120.1	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	GO:0009058|biosynthetic process	NA	NA
PtpAffx.218906.1.S1_s_at	B	B1A	POPTR_0074s00240	POPTR_0074s00240 (8:31)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218928.1.S1_at	B	B1S	POPTR_0001s05870	POPTR_0001s05870 (4:393)	scaffold_1:4615964-4616519(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218936.1.S1_at	B	B1S	POPTR_0019s01300	POPTR_0019s01300 (4:330)	scaffold_121:58171-58754(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218947.1.S1_at	B	B1S	POPTR_0003s01970	POPTR_0003s01970 (8:33)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.218956.1.S1_at	B	B8S	POPTR_0016s04760	POPTR_0016s04390 (0:457)//POPTR_0016s04400 (0:453)//POPTR_0016s04760 (2:404)//POPTR_0016s04640 (0:404)//POPTR_0016s04780 (0:404)//POPTR_0016s04770 (0:395)//POPTR_0016s04740 (1:392)//POPTR_0016s04380 (0:330)	NA	NA	NA	NA	AT5G22355.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g42070.1	"DC1 domain-containing protein, putative, expressed"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.218961.1.S1_at	B	B1S	POPTR_0047s00250	POPTR_0047s00250 (4:657)	scaffold_47:80367-81407(-) (10)	NA	Q9ZWC8	Serine/threonine-protein kinase BRI1-like 1	AT1G74170.1	receptor like protein 13 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.218968.1.S1_at	B	B2S	POPTR_0017s05100	POPTR_0047s00270 (0:297)//POPTR_0017s05100 (0:297)	scaffold_47:31435-31733(-) (9)	NA	O22864	Protein NLP8	AT2G43500.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.218968.1.S1_x_at	B	B2S	POPTR_0047s00270	POPTR_0047s00270 (1:347)//POPTR_0017s05100 (0:340)	scaffold_47:31435-31783(-) (9)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g14940.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.218978.1.S1_at	B	B2S	POPTR_0003s18380	POPTR_0003s18430 (5:293)//POPTR_0003s18380 (5:292)	scaffold_112:17117-17410(-) (11)//scaffold_3:17514967-17521888(-) (11)//scaffold_97:55802-56081(-) (9)	NA	Q8L831	Nudix hydrolase 3	AT1G79690.1	nudix hydrolase homolog 3 	LOC_Os02g55030.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.218981.1.S1_at	B	B1S	POPTR_0012s15070	POPTR_0012s15070 (7:1020)	scaffold_12:14710712-14719472(-) (11)	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g026340.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218988.1.S1_at	B	B1S	POPTR_0007s12390	POPTR_0007s12390 (6:129)	scaffold_12:12512244-12512377(-) (11)	NA	Q40287	Anthocyanidin 3-O-glucosyltransferase 5	AT2G18570.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g43280.1	"hydroquinone glucosyltransferase, putative, expressed"	Medtr8g088810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218988.1.S1_x_at	B	B1S	POPTR_0007s12390	POPTR_0007s12390 (7:146)	scaffold_12:12512244-12512394(-) (11)	NA	Q40287	Anthocyanidin 3-O-glucosyltransferase 5	AT2G18570.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g43280.1	"hydroquinone glucosyltransferase, putative, expressed"	Medtr8g088810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218989.1.S1_at	B	B1S	POPTR_0012s12290	POPTR_0012s12290 (6:499)	scaffold_12:12511124-12511719(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218990.1.S1_at	B	B10S	POPTR_0012s12290	POPTR_0012s15110 (0:4042)//POPTR_0012s15030 (0:3957)//POPTR_0012s15050 (0:3497)//POPTR_0012s15020 (0:1937)//POPTR_0012s15010 (0:1720)//POPTR_0012s15000 (0:1046)//POPTR_0012s15040 (0:1044)//POPTR_0012s12290 (5:821)//POPTR_0012s12310 (0:733)//POPTR_0012s15100 (0:153)	NA	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218990.1.S1_x_at	B	B10S	POPTR_0012s12290	POPTR_0012s15110 (0:4042)//POPTR_0012s15030 (0:3957)//POPTR_0012s15050 (0:3497)//POPTR_0012s15020 (0:1937)//POPTR_0012s15010 (0:1720)//POPTR_0012s15000 (0:1046)//POPTR_0012s15040 (0:1044)//POPTR_0012s12290 (5:821)//POPTR_0012s12310 (0:733)//POPTR_0012s15100 (0:153)	NA	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218991.1.S1_at	B	B1S	POPTR_0012s12280	POPTR_0012s12280 (7:398)	scaffold_12:12505592-12506112(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.218997.1.S1_x_at	B	B2S	POPTR_0012s12180	POPTR_0012s12180 (4:864)//POPTR_0012s12190 (1:164)	NA	NA	O48651	Squalene monooxygenase	AT4G37760.1	squalene epoxidase 3 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.218998.1.S1_x_at	B	B4S	POPTR_0012s15220	POPTR_0012s15230 (5:941)//POPTR_0012s15220 (6:549)//POPTR_0012s12180 (3:307)//POPTR_0015s15430 (1:300)	scaffold_12:14875539-14883801(+) (11)	NA	O48651	Squalene monooxygenase	AT4G37760.1	squalene epoxidase 3 	LOC_Os03g12900.5	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219000.1.S1_at	B	B2S	POPTR_0012s12060	POPTR_0012s12060 (6:613)//POPTR_0012s12090 (2:602)	NA	NA	Q9SA16	Protein PHLOEM PROTEIN 2-LIKE A9	AT1G10155.1	phloem protein 2-A10 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219002.1.S1_s_at	B	B1S	POPTR_0012s12010	POPTR_0012s12010 (3:369)	scaffold_12:12332728-12332989(-) (10)	NA	Q9LW07	Probable polygalacturonase At3g15720	AT5G17200.1	Pectin lyase-like superfamily protein 	LOC_Os01g07790.1	"polygalacturonase, putative"	Medtr3g104790.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.219013.1.S1_at	B	B1S	POPTR_0006s17740	POPTR_0006s17740 (2:566)	scaffold_24:218090-218682(-) (11)	NA	Q3ECB8	Pentatricopeptide repeat-containing protein At1g77170	AT1G77170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g42610.1	"pentatricopeptide, putative, expressed"	Medtr4g159620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219014.1.S1_at	B	B1S	POPTR_0024s00440	POPTR_0024s00440 (7:143)	scaffold_24:166146-166343(-) (11)	NA	Q8GW61	Sugar transport protein 14	AT1G77210.2	sugar transporter 14 	LOC_Os09g15330.2	"transporter family protein, putative, expressed"	Medtr4g159510.1	General substrate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219021.1.S1_at	B	B1A	POPTR_0018s01390	POPTR_0018s01390 (7:157)	scaffold_18:1340358-1340585(-) (11)	NA	NA	NA	AT5G11420.1	"Protein of unknown function, DUF642 "	LOC_Os01g42520.1	expressed protein	Medtr1g013340.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219032.1.S1_at	B	B1S	POPTR_0005s04540	POPTR_0005s04540 (4:3013)	NA	NA	Q9FDW0	Protein FRIGIDA	AT5G27230.1	Frigida-like protein 	LOC_Os07g40270.1	"frigida, putative, expressed"	Medtr3g128210.1	Prefoldin; Frigida-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219048.1.S1_at	B	B2S	POPTR_0008s21990	POPTR_0008s21990 (2:368)//POPTR_0008s22000 (0:152)	NA	NA	Q4KMJ1	Cation transport regulator-like protein 2	AT1G44790.1	ChaC-like family protein 	LOC_Os04g37580.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr1g037330.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219051.1.S1_at	B	B3S	POPTR_0008s21900	POPTR_0008s22590 (5:203)//POPTR_0010s02450 (0:203)//POPTR_0008s21900 (7:203)	scaffold_8:16232335-16233045(-) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219055.1.S1_x_at	B	B4S	POPTR_0018s14180	POPTR_0018s14150 (2:1318)//POPTR_0018s14180 (5:1307)//POPTR_0018s14450 (3:1306)//POPTR_0008s18640 (4:838)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os01g41770.1	"leucine rich repeat protein, putative, expressed"	Medtr3g166620.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.219064.1.S1_x_at	B	B1S	POPTR_0007s08900	POPTR_0007s08900 (0:330)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.219069.1.S1_at	B	B1S	POPTR_0005s28400	POPTR_0005s28400 (8:670)	NA	NA	NA	NA	AT1G58200.2	MSCS-like 3 	NA	NA	Medtr3g149450.1	MscS Mechanosensitive ion channel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219091.1.S1_at	B	B1S	POPTR_0012s11370	POPTR_0012s11370 (8:2051)	NA	NA	P42762	"ERD1 protein, chloroplastic"	AT5G51070.1	Clp ATPase 	LOC_Os02g32520.1	"ERD1 protein, chloroplast precursor, putative, expressed"	Medtr3g151610.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219095.1.S1_at	B	B1S	POPTR_0016s11476	POPTR_0016s11476 (0:14)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219097.1.S1_at	B	B2S	POPTR_0014s05480	POPTR_0014s05485 (1:171)//POPTR_0014s05480 (8:169)	scaffold_14:4100083-4100470(-) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219102.1.S1_at	B	B4S	POPTR_0018s05940	POPTR_0018s05940 (8:1147)//POPTR_0018s05990 (7:782)//POPTR_0018s06000 (7:782)//POPTR_0018s06020 (7:758)	NA	NA	Q12955	Ankyrin-3	AT4G03470.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g092930.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219104.1.S1_at	B	B1S	POPTR_0019s06330	POPTR_0019s06330 (3:310)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219107.1.S1_at	B	B1S	POPTR_0003s01130	POPTR_0003s01130 (0:19)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219113.1.S1_x_at	B	B2S	POPTR_0005s00930	POPTR_0005s00930 (0:582)//POPTR_0005s01330 (0:576)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219114.1.S1_at	B	B6S	POPTR_0003s02290	POPTR_0005s01340 (0:159)//POPTR_0003s02290 (0:159)//POPTR_0018s03140 (0:159)//POPTR_0005s01160 (0:159)//POPTR_0005s01120 (0:159)//POPTR_0005s00960 (0:157)	NA	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028060.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219114.1.S1_x_at	B	B6S	POPTR_0005s01120	POPTR_0005s01120 (1:725)//POPTR_0005s01340 (0:720)//POPTR_0005s01160 (0:719)//POPTR_0005s00960 (0:718)//POPTR_0003s02290 (0:717)//POPTR_0018s03140 (0:717)	NA	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219120.1.S1_at	B	B1S	POPTR_0005s01120	POPTR_0005s01120 (8:31)	NA	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219129.1.S1_s_at	B	B3S	POPTR_0011s10230	POPTR_0011s10190 (5:673)//POPTR_0011s10270 (6:673)//POPTR_0011s10230 (6:673)	scaffold_11:12648219-12648716(-) (10)	NA	P72580	Prenyl transferase	AT1G78510.2	solanesyl diphosphate synthase 1 	LOC_Os05g50550.1	"polyprenyl synthetase, putative, expressed"	NA	NA	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.219152.1.S1_at	B	B4S	POPTR_0001s42470	POPTR_0001s42470 (2:716)//POPTR_0001s42390 (0:620)//POPTR_0001s45070 (0:599)//POPTR_0001s43690 (0:577)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219159.1.S1_at	B	B2S	POPTR_0013s12560	POPTR_0013s12560 (0:367)//POPTR_0013s12580 (0:265)	NA	NA	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr5g082640.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.219159.1.S1_x_at	B	B2S	POPTR_0013s12580	POPTR_0013s12560 (0:367)//POPTR_0013s12580 (1:265)	NA	NA	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g19420.1	"O-methyltransferase, putative, expressed"	Medtr5g082640.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.219160.1.S1_at	B	B2S	POPTR_0013s14600	POPTR_0191s00230 (0:307)//POPTR_0013s14600 (0:278)	NA	NA	Q5QJC3	5' exonuclease Apollo	AT1G27410.1	DNA repair metallo-beta-lactamase family protein 	LOC_Os01g57440.1	"DNA repair metallo-beta-lactamase, putative, expressed"	Medtr7g099460.1	DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219160.1.S1_x_at	B	B3S	POPTR_0013s14610	POPTR_0013s14600 (0:1596)//POPTR_0191s00230 (1:742)//POPTR_0013s14610 (1:77)	NA	NA	Q5QJC3	5' exonuclease Apollo	AT1G27410.1	DNA repair metallo-beta-lactamase family protein 	LOC_Os01g57440.1	"DNA repair metallo-beta-lactamase, putative, expressed"	Medtr7g099460.1	DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219161.1.S1_at	B	B3S	POPTR_0013s12590	POPTR_0013s12590 (0:141)//POPTR_0191s00230 (0:135)//POPTR_0013s12660 (0:18)	NA	NA	D2H8V8	5' exonuclease Apollo	AT1G27410.1	DNA repair metallo-beta-lactamase family protein 	LOC_Os01g57440.1	"DNA repair metallo-beta-lactamase, putative, expressed"	Medtr7g099460.1	DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219161.1.S1_x_at	B	B3S	POPTR_0013s12590	POPTR_0013s12590 (0:141)//POPTR_0191s00230 (0:135)//POPTR_0013s12660 (0:18)	NA	NA	D2H8V8	5' exonuclease Apollo	AT1G27410.1	DNA repair metallo-beta-lactamase family protein 	LOC_Os01g57440.1	"DNA repair metallo-beta-lactamase, putative, expressed"	Medtr7g099460.1	DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219178.1.S1_at	B	B1S	POPTR_0016s03170	POPTR_0016s03170 (8:335)	NA	NA	O22207	Ubiquitin carboxyl-terminal hydrolase 5	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.219190.1.S1_x_at	B	B14S	POPTR_0035s00230	POPTR_0017s14620 (0:484)//POPTR_0035s00260 (0:484)//POPTR_0013s10740 (0:484)//POPTR_0035s00335 (0:484)//POPTR_0035s00400 (0:480)//POPTR_0043s00306 (0:455)//POPTR_0117s00210 (0:454)//POPTR_0548s00200 (0:453)//POPTR_0035s00200 (0:443)//POPTR_0017s13730 (0:427)//POPTR_0043s00230 (0:225)//POPTR_0035s00230 (7:225)//POPTR_0907s00010 (0:224)//POPTR_0017s13760 (0:22)	scaffold_35:72554-73038(-) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219209.1.S1_at	B	B2S	POPTR_0576s00200	POPTR_0576s00200 (5:92)//POPTR_0018s02985 (3:92)	scaffold_1:35070370-35070462(-) (11)//scaffold_11:889406-889498(-) (11)//scaffold_11:1395626-1399274(+) (11)//scaffold_11:1588954-1589040(+) (9)//scaffold_605:555-647(+) (11)	NA	NA	NA	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g012180.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219213.1.S1_at	B	B1S	POPTR_0008s20450	POPTR_0008s20450 (2:145)	scaffold_8:14239262-14239436(+) (11)	NA	NA	NA	AT5G18970.1	AWPM-19-like family protein 	LOC_Os05g33220.1	"AWPM-19-like membrane family protein, putative, expressed"	Medtr6g084000.1	AWPM-19-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219213.1.S1_x_at	B	B1S	POPTR_0008s20450	POPTR_0008s20450 (3:145)	scaffold_8:14239262-14239436(+) (11)	NA	NA	NA	AT5G18970.1	AWPM-19-like family protein 	LOC_Os05g33220.1	"AWPM-19-like membrane family protein, putative, expressed"	Medtr6g084000.1	AWPM-19-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219246.1.S1_at	B	B1S	POPTR_0005s02530	POPTR_0005s02530 (1:359)	scaffold_5:1618301-1619075(-) (10)	NA	Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G27730.1	Protein of unknown function (DUF1624) 	LOC_Os01g70550.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr7g138520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219249.1.S1_s_at	B	B1S	POPTR_0001s45130	POPTR_0001s45130 (8:295)	scaffold_1:45515267-45515698(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219250.1.S1_x_at	B	B5S	POPTR_0001s45130	POPTR_0001s45130 (8:323)//POPTR_0001s43580 (5:323)//POPTR_0001s43550 (0:323)//POPTR_0134s00200 (0:295)//POPTR_0065s00210 (0:270)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219252.1.S1_at	B	B2S	POPTR_0001s43470	POPTR_0001s43470 (7:325)//POPTR_0001s43500 (4:227)	scaffold_1:43627354-43627701(+) (11)	NA	Q42484	Disease resistance protein RPS2	AT4G26090.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219252.1.S1_x_at	B	B5S	POPTR_0001s43470	POPTR_0001s43470 (8:410)//POPTR_0001s47770 (0:410)//POPTR_0001s42395 (0:410)//POPTR_0001s43545 (0:385)//POPTR_0001s43500 (5:312)	scaffold_1:43627354-43627786(+) (11)	NA	Q42484	Disease resistance protein RPS2	AT4G26090.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219268.1.S1_s_at	B	B2S	POPTR_0004s03130	POPTR_0001s10760 (6:596)//POPTR_0004s03130 (7:456)	scaffold_4:561540-562025(+) (11)	NA	P12628	NADP-dependent malic enzyme	AT2G19900.1	NADP-malic enzyme 1 	LOC_Os01g52500.5	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219280.1.S1_x_at	B	B2S	POPTR_0011s06040	POPTR_0011s06040 (6:381)//POPTR_0011s06030 (0:367)	NA	NA	Q9FJ40	GDSL esterase/lipase At5g45960	AT5G45960.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g04624.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g018560.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.219285.1.S1_at	B	B1S	POPTR_0013s07520	POPTR_0013s07520 (0:89)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219291.1.S1_x_at	B	B6S	POPTR_0012s00800	POPTR_0039s00380 (0:571)//POPTR_0012s00800 (3:568)//POPTR_0046s00290 (0:485)//POPTR_0012s03210 (2:379)//POPTR_0011s07850 (1:354)//POPTR_0039s00350 (0:330)	NA	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os12g12010.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g093720.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.219300.1.S1_s_at	B	B1S	POPTR_0005s03020	POPTR_0005s03020 (8:31)	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219302.1.S1_at	B	B2S	POPTR_0005s03030	POPTR_0005s03445 (6:336)//POPTR_0005s03030 (6:336)	NA	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.219302.1.S1_x_at	B	B2S	POPTR_0005s03030	POPTR_0005s03445 (7:499)//POPTR_0005s03030 (7:499)	NA	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.219314.1.S1_at	B	B1S	POPTR_0009s00540	POPTR_0009s00540 (4:513)	scaffold_9:426957-428212(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.219325.1.S1_s_at	B	B2S	POPTR_0011s01980	POPTR_0011s02020 (8:78)//POPTR_0011s01980 (8:78)	NA	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT5G04730.1	Ankyrin-repeat containing protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219331.1.S1_x_at	B	B7S	POPTR_0011s06270	POPTR_0011s06270 (7:1139)//POPTR_0011s06350 (3:1126)//POPTR_0011s06140 (0:1107)//POPTR_0011s06540 (4:1105)//POPTR_0011s06690 (4:1092)//POPTR_0122s00200 (4:1090)//POPTR_0011s06470 (0:915)	NA	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.219347.1.S1_s_at	B	B1S	POPTR_0010s21260	POPTR_0010s21260 (8:326)	scaffold_10:18613641-18614136(+) (10)	NA	P27322	Heat shock cognate 70 kDa protein 2	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.4	"DnaK family protein, putative, expressed"	Medtr7g025700.1	Heat shock protein Hsp70; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219349.1.S1_at	B	B1S	POPTR_0010s21300	POPTR_0010s21300 (5:1303)	scaffold_10:18640096-18642360(+) (10)	NA	P53610	Geranylgeranyl transferase type-1 subunit beta	AT2G39550.1	Prenyltransferase family protein 	LOC_Os01g05680.1	"geranylgeranyl transferase type-1 subunit beta, putative"	Medtr7g025790.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.219361.1.S1_at	B	B2S	POPTR_0001s15665	POPTR_0001s15665 (0:169)//POPTR_0003s02865 (0:155)	scaffold_11:6796944-6797113(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g15730.1	conserved hypothetical protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.219361.1.S1_x_at	B	B2S	POPTR_0001s15665	POPTR_0001s15665 (3:335)//POPTR_0003s02865 (1:305)	scaffold_11:6796778-6797113(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g15730.1	conserved hypothetical protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.219363.1.S1_x_at	B	B5S	POPTR_0011s06330	POPTR_0011s08000 (0:1293)//POPTR_0011s06180 (0:1281)//POPTR_0011s06400 (0:1276)//POPTR_0011s06330 (7:1253)//POPTR_0011s06160 (0:938)	NA	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT1G29740.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr4g136220.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.219375.1.S1_at	B	B2S	POPTR_0003s15180	POPTR_0003s15180 (8:548)//POPTR_0003s15190 (4:533)	scaffold_3:15044974-15045521(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219381.1.S1_at	B	B1S	POPTR_0017s01550	POPTR_0017s01550 (0:428)	NA	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr7g088340.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219413.1.S1_at	B	B2S	POPTR_0004s20880	POPTR_0004s20880 (1:536)//POPTR_0004s20890 (1:524)	NA	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.219413.1.S1_x_at	B	B2S	POPTR_0004s20880	POPTR_0004s20880 (4:536)//POPTR_0004s20890 (4:524)	NA	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.219441.1.S1_at	B	B1S	POPTR_0014s00430	POPTR_0014s00430 (2:212)	scaffold_14:293294-293949(+) (9)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219445.1.S1_x_at	B	B3S	POPTR_0014s00460	POPTR_0014s00460 (7:453)//POPTR_0014s01160 (5:357)//POPTR_0014s00610 (0:291)	NA	NA	NA	NA	AT1G16770.1	unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g04780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219468.1.S1_at	B	B1S	POPTR_0016s08030	POPTR_0016s08030 (2:152)	scaffold_1692:2526-2675(+) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G03870.1	Glutaredoxin family protein 	LOC_Os04g33680.1	"glutaredoxin, putative, expressed"	Medtr7g127470.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.219470.1.S1_at	B	B1S	POPTR_0001s05910	POPTR_0001s05910 (2:567)	scaffold_3:2213215-2213796(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219470.1.S1_x_at	B	B1S	POPTR_0001s05910	POPTR_0001s05910 (3:567)	scaffold_3:2213215-2213796(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219486.1.S1_at	B	B1S	POPTR_0010s08260	POPTR_0010s08260 (3:295)	scaffold_10:9205653-9206913(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219502.1.S1_at	B	B2S	POPTR_0084s00250	POPTR_0084s00250 (8:585)//POPTR_0001s39320 (6:578)	scaffold_84:59520-60537(-) (10)	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os02g13850.1	"leucine-rich repeat-containing protein kinase family protein, putative, expressed"	Medtr8g068000.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.219503.1.S1_x_at	B	B3S	POPTR_0001s39320	POPTR_0001s39320 (3:754)//POPTR_0001s39455 (2:754)//POPTR_0001s39360 (3:748)	NA	NA	C0LGG7	Probable LRR receptor-like serine/threonine-protein kinase At1g53420	AT1G53420.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.219526.1.S1_x_at	B	B5S	POPTR_0096s00250	POPTR_0017s01570 (0:2493)//POPTR_0914s00200 (0:538)//POPTR_0096s00250 (8:494)//POPTR_0017s01550 (0:473)//POPTR_0017s01560 (0:141)	NA	NA	Q7XBQ9	Disease resistance protein RGA2	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.219527.1.S1_at	B	B1S	POPTR_0005s06970	POPTR_0005s06970 (8:280)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g143560.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219550.1.S1_at	B	B2S	POPTR_0004s12790	POPTR_0004s12790 (2:2308)//POPTR_0006s06460 (0:497)	NA	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219550.1.S1_x_at	B	B2S	POPTR_0004s12790	POPTR_0004s12790 (5:2318)//POPTR_0006s06460 (0:497)	NA	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219578.1.S1_at	B	B3S	POPTR_0123s00240	POPTR_0123s00240 (8:615)//POPTR_0019s02175 (0:327)//POPTR_0019s02130 (1:111)	scaffold_123:66418-67033(-) (11)//scaffold_19:1956139-1956751(-) (10)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.219593.1.S1_x_at	B	B5S	POPTR_0008s18520	POPTR_0012s10980 (0:348)//POPTR_0018s14190 (0:347)//POPTR_0018s14110 (1:347)//POPTR_0008s18690 (1:340)//POPTR_0008s18520 (2:231)	NA	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219605.1.S1_at	B	B4S	POPTR_0019s03070	POPTR_0019s03060 (2:224)//POPTR_0019s03070 (5:224)//POPTR_0123s00200 (1:219)//POPTR_2061s00200 (0:156)	NA	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.21967.1.A1_s_at	B	B1S	POPTR_0004s22870	POPTR_0004s22870 (2:92)	scaffold_4:21712247-21712697(+) (11)	NA	NA	NA	AT1G03330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g05850.1	"LSM domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21967.2.A1_at	B	B1S	POPTR_0003s01050	POPTR_0003s01050 (7:1781)	NA	NA	O35900	U6 snRNA-associated Sm-like protein LSm2	AT1G03330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g05850.1	"LSM domain containing protein, expressed"	Medtr7g127450.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21967.3.A1_at	B	B1S	POPTR_0003s01050	POPTR_0003s01050 (2:192)	NA	NA	O35900	U6 snRNA-associated Sm-like protein LSm2	AT1G03330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g05850.1	"LSM domain containing protein, expressed"	Medtr7g127450.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219690.1.S1_at	B	B1S	POPTR_0006s14460	POPTR_0006s14460 (7:484)	scaffold_6:11811066-11811782(-) (11)	NA	NA	NA	AT2G06040.1	"CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). "	LOC_Os08g35700.1	"Leucine Rich Repeat family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219692.1.S1_at	B	B2S	POPTR_0006s14430	POPTR_0006s14430 (6:658)//POPTR_0018s07100 (0:477)	NA	NA	NA	NA	AT2G06010.1	OBP3-responsive gene 4 	LOC_Os04g36850.1	"ORG4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219692.1.S1_x_at	B	B2S	POPTR_0006s14430	POPTR_0006s14430 (7:1712)//POPTR_0018s07100 (0:1454)	NA	NA	NA	NA	AT2G06010.1	OBP3-responsive gene 4 	LOC_Os04g36850.1	"ORG4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21970.1.A1_at	B	B1S	POPTR_0009s06550	POPTR_0009s06550 (4:688)	scaffold_9:6309660-6310515(-) (11)	NA	NA	NA	AT4G15030.1	CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits to 5700 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses - 76; Other Eukaryotes - 2900 (source: NCBI BLink). 	LOC_Os11g42000.1	"FRA10AC1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219738.1.S1_at	B	B1S	POPTR_0006s13520	POPTR_0006s13520 (7:466)	scaffold_6:10742367-10744776(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219758.1.S1_at	B	B1S	POPTR_0006s12950	POPTR_0006s12950 (8:1799)	scaffold_6:10208063-10209863(+) (10)	NA	Q6NPF8	UPF0497 membrane protein At2g37200	AT2G37200.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g10870.1	"membrane associated DUF588 domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219781.1.S1_at	B	B2S	POPTR_0006s12550	POPTR_0006s12550 (5:389)//POPTR_0006s12540 (0:295)	scaffold_6:9692392-9693594(-) (10)	NA	Q4KLT0	Probable E3 ubiquitin-protein ligase RNF217	AT3G53690.1	RING/U-box superfamily protein 	LOC_Os08g35060.1	"protein binding protein, putative, expressed"	Medtr8g026380.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.219786.1.S1_at	B	B1S	POPTR_0006s12340	POPTR_0006s12340 (7:322)	NA	NA	Q42430	Zinc finger protein 1	AT5G03510.1	C2H2-type zinc finger family protein 	LOC_Os04g08060.1	"ZOS4-03 - C2H2 zinc finger protein, expressed"	Medtr4g076150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.219793.1.S1_at	B	B1S	POPTR_0006s12130	POPTR_0006s12130 (7:1574)	scaffold_6:9296000-9297695(+) (10)	NA	NA	NA	AT5G51200.1	Protein of unknown function (DUF3414) 	LOC_Os02g10790.1	expressed protein	Medtr7g118310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219811.1.S1_at	B	B1S	POPTR_0006s11780	POPTR_0006s11780 (2:535)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219851.1.S1_at	B	B4S	POPTR_0011s02050	POPTR_0011s02050 (3:255)//POPTR_0002s21030 (0:165)//POPTR_0011s02060 (0:162)//POPTR_0011s03640 (0:161)	NA	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	NA	GO:0005529|sugar binding	NA
PtpAffx.219852.1.S1_at	B	B1S	POPTR_0172s00210	POPTR_0172s00210 (0:209)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219852.1.S1_x_at	B	B1S	POPTR_0172s00210	POPTR_0172s00210 (1:263)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219872.1.S1_at	B	B1S	POPTR_0005s15260	POPTR_0005s15260 (7:514)	NA	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT5G38260.1	Protein kinase superfamily protein 	LOC_Os01g49560.1	expressed protein	Medtr7g093700.1	"receptor serine/threonine kinase PR5K, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219882.1.S1_at	B	B4S	POPTR_0017s01630	POPTR_0017s01630 (7:773)//POPTR_0096s00240 (0:446)//POPTR_0017s01600 (0:432)//POPTR_0017s01590 (3:320)	NA	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219939.1.S1_at	B	B2S	POPTR_0011s10600	POPTR_0011s10600 (7:778)//POPTR_0081s00200 (0:737)	NA	NA	Q9NPC3	E3 ubiquitin-protein ligase CCNB1IP1	AT1G53490.1	RING/U-box superfamily protein 	LOC_Os02g13810.1	"DNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219977.1.S1_at	B	B1S	POPTR_0001s15710	POPTR_0001s15710 (8:475)	scaffold_1:12528103-12528777(+) (11)	NA	Q9M644	Ethylene-responsive transcription factor LEP	AT5G13910.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32790.1	"AP2 domain containing protein, expressed"	Medtr8g139310.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.219994.1.S1_at	B	B1S	POPTR_0001s15250	POPTR_0001s15250 (4:257)	scaffold_1:12085738-12086036(-) (11)	NA	NA	NA	AT5G02890.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g43670.1	"transferase family protein, putative, expressed"	Medtr5g013390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219994.1.S1_x_at	B	B1S	POPTR_0001s15250	POPTR_0001s15250 (7:280)	scaffold_1:12085715-12086036(-) (11)	NA	NA	NA	AT5G02890.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g43670.1	"transferase family protein, putative, expressed"	Medtr5g013390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22.1.S1_at	B	B1S	POPTR_0001s06000	POPTR_0001s06000 (8:479)	scaffold_1:4693603-4695140(-) (9)	NA	NA	NA	AT3G08550.1	elongation defective 1 protein / ELD1 protein 	LOC_Os01g13200.1	"abscisic acid insensitive 8, putative, expressed"	Medtr3g026170.1	"ABI8/ELD1/KOB1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220026.1.S1_at	B	B1S	POPTR_0001s03040	POPTR_0001s03040 (5:153)	NA	NA	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.220051.1.S1_at	B	B1S	POPTR_0001s02470	POPTR_0001s02470 (8:728)	scaffold_1:1912222-1913160(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220145.1.S1_at	B	B1S	POPTR_0001s00730	POPTR_0001s00730 (2:264)	scaffold_1:603213-604701(+) (11)	NA	A0JP85	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.3	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220162.1.S1_at	B	B3S	POPTR_0011s12970	POPTR_0011s12970 (5:239)//POPTR_0011s13150 (5:239)//POPTR_0011s13170 (5:239)	scaffold_11:15695272-15695517(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.220162.1.S1_x_at	B	B3S	POPTR_0011s12970	POPTR_0011s12970 (6:239)//POPTR_0011s13150 (6:239)//POPTR_0011s13170 (6:239)	scaffold_11:15695272-15695517(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.220178.1.S1_x_at	B	B4S	POPTR_0017s01600	POPTR_0017s01590 (2:948)//POPTR_0096s00240 (5:491)//POPTR_0017s01600 (6:491)//POPTR_0017s01630 (6:491)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220202.1.S1_at	B	B1S	POPTR_0007s11060	POPTR_0007s11060 (6:1944)	scaffold_7:11313209-11320308(+) (9)	NA	Q8LDU4	"Red chlorophyll catabolite reductase, chloroplastic"	AT4G37000.1	accelerated cell death 2 (ACD2) 	LOC_Os10g25030.1	"red chlorophyll catabolite reductase, putative, expressed"	Medtr5g103790.1	Red chlorophyll catabolite reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220213.1.S1_at	B	B1S	POPTR_0011s08600	POPTR_0011s08600 (5:145)	NA	NA	NA	NA	AT5G55580.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g39430.1	"mTERF family protein, expressed"	Medtr5g102090.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220224.1.S1_s_at	B	B3S	POPTR_0003s19910	POPTR_0178s00240 (8:31)//POPTR_0003s19910 (8:31)//POPTR_0003s19950 (8:31)	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.220224.1.S1_x_at	B	B2S	POPTR_0003s19910	POPTR_0003s19910 (3:481)//POPTR_0003s19950 (0:429)	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.220225.1.S1_at	B	B1S	POPTR_0003s19870	POPTR_0003s19870 (8:551)	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g021730.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.220240.1.S1_x_at	B	B1A	POPTR_0001s12730	POPTR_0001s12730 (1:204)	scaffold_1:48016391-48016596(-) (11)	NA	Q9FTZ2	"Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase"	AT1G20050.1	"C-8,7 sterol isomerase "	LOC_Os01g01369.1	"3-beta-hydroxysteroid-Delta-isomerase, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0016125|sterol metabolic process||GO:0006629|lipid metabolic process	GO:0047750|cholestenol delta-isomerase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.220313.1.S1_at	B	B1S	POPTR_0014s00540	POPTR_0014s00540 (7:875)	NA	NA	P24555	Protease 2	AT1G50380.1	Prolyl oligopeptidase family protein 	LOC_Os06g51410.2	"OsPOP15 - Putative Prolyl Oligopeptidase homologue, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220363.1.S1_x_at	B	B2S	POPTR_0002s09980	POPTR_0002s09980 (1:148)//POPTR_0002s24560 (1:118)	NA	NA	Q9FZ95	Purine permease 3	AT1G28220.1	purine permease 3 	LOC_Os09g29239.1	"purine permease, putative, expressed"	Medtr3g150070.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.220424.1.S1_at	B	B2S	POPTR_0017s00820	POPTR_0017s03320 (1:438)//POPTR_0017s00820 (1:418)	NA	NA	Q9SHY2	Probable metal-nicotianamine transporter YSL7	AT1G65730.1	YELLOW STRIPE like 7 	LOC_Os04g44320.1	"transposon protein, putative, unclassified, expressed"	Medtr6g089710.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220424.1.S1_x_at	B	B4S	POPTR_0017s00820	POPTR_0017s03320 (3:603)//POPTR_0017s03330 (2:583)//POPTR_0017s00820 (3:583)//POPTR_0017s00810 (2:583)	NA	NA	Q9SHY2	Probable metal-nicotianamine transporter YSL7	AT1G65730.1	YELLOW STRIPE like 7 	LOC_Os04g44320.1	"transposon protein, putative, unclassified, expressed"	Medtr6g089710.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220471.1.S1_x_at	B	B24S	POPTR_0011s01340	POPTR_0021s00225 (0:3613)//POPTR_0011s01760 (0:2337)//POPTR_0011s01350 (0:771)//POPTR_0011s05930 (0:533)//POPTR_0011s01670 (1:521)//POPTR_0011s01650 (1:513)//POPTR_0011s01340 (1:513)//POPTR_0011s01880 (1:513)//POPTR_0011s01750 (1:512)//POPTR_0266s00010 (1:511)//POPTR_0021s00210 (0:510)//POPTR_0011s03000 (0:507)//POPTR_0069s00220 (0:507)//POPTR_0011s01300 (0:502)//POPTR_0001s36450 (0:502)//POPTR_0011s01860 (0:501)//POPTR_0011s01755 (1:478)//POPTR_0011s01810 (1:442)//POPTR_0021s00240 (0:347)//POPTR_0001s36455 (0:347)//POPTR_0011s01310 (0:265)//POPTR_0011s01956 (0:139)//POPTR_0011s01943 (0:137)//POPTR_0011s01666 (0:73)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g14220.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220495.1.S1_at	B	B14S	POPTR_0001s42410	POPTR_0001s43660 (0:412)//POPTR_0001s47770 (0:320)//POPTR_0001s45070 (0:318)//POPTR_0001s43710 (0:317)//POPTR_0001s42590 (0:317)//POPTR_0001s47815 (0:317)//POPTR_0001s47820 (0:317)//POPTR_0001s43690 (0:317)//POPTR_0001s42410 (0:316)//POPTR_0001s42470 (0:315)//POPTR_0001s47840 (0:314)//POPTR_0001s43825 (0:314)//POPTR_0001s43800 (0:312)//POPTR_0049s00230 (0:302)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220495.1.S1_x_at	B	B11S	POPTR_0001s43710	POPTR_0001s47770 (0:749)//POPTR_0001s42410 (0:746)//POPTR_0001s47840 (1:743)//POPTR_0001s47820 (0:738)//POPTR_0001s43800 (2:726)//POPTR_0049s00230 (0:726)//POPTR_0001s43690 (1:725)//POPTR_0001s43825 (0:724)//POPTR_0001s43660 (1:721)//POPTR_0001s42590 (1:707)//POPTR_0001s43710 (2:705)	NA	NA	Q42484	Disease resistance protein RPS2	AT4G26090.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220510.1.S1_at	B	B3S	POPTR_0002s00950	POPTR_0002s00940 (0:2403)//POPTR_0002s12250 (5:1748)//POPTR_0002s00950 (6:330)	NA	NA	Q94F62	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	AT4G33430.1	BRI1-associated receptor kinase 	LOC_Os06g16330.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g008470.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.220521.1.S1_at	B	B1S	POPTR_0005s14860	POPTR_0005s14860 (6:1291)	NA	NA	NA	NA	AT2G01275.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g03100.2	"protein binding protein, putative, expressed"	Medtr1g137400.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220585.1.S1_at	B	B4S	POPTR_0492s00210	POPTR_0492s00210 (7:630)//POPTR_0015s01860 (0:559)//POPTR_0015s01850 (6:534)//POPTR_0015s01910 (4:463)	scaffold_15:1250043-1250579(-) (10)//scaffold_492:7920-8550(-) (11)	NA	NA	NA	AT5G53450.2	OBP3-responsive gene 1 	LOC_Os01g46720.1	expressed protein	Medtr3g124180.1	"Proteinase inhibitor I4, serpin; Protein kinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220692.1.S1_x_at	B	B6S	POPTR_0009s00560	POPTR_0008s21630 (0:282)//POPTR_0007s08900 (2:273)//POPTR_0010s04033 (3:273)//POPTR_0007s08675 (2:273)//POPTR_0009s00560 (3:273)//POPTR_0016s11393 (2:268)	scaffold_10:4455911-4456194(+) (11)//scaffold_10:4630125-4630408(-) (11)//scaffold_12:6360483-6360766(+) (11)//scaffold_12:13022611-13022894(+) (11)//scaffold_127:50750-51033(+) (11)//scaffold_14:15251182-15251465(-) (10)//scaffold_15:2016417-2016700(+) (11)//scaffold_15:2183282-2183565(-) (11)//scaffold_15:2197529-2197812(+) (11)//scaffold_15:2302039-2302322(+) (11)//scaffold_16:10041040-10041323(+) (11)//scaffold_16:10075978-10076261(-) (11)//scaffold_19:7970582-7970865(-) (11)//scaffold_19:8109891-8110131(-) (9)//scaffold_20:489927-490210(-) (11)//scaffold_23:341151-341434(+) (11)//scaffold_23:412068-412351(+) (11)//scaffold_24:437962-438245(-) (11)//scaffold_2640:2833-3116(+) (11)//scaffold_37:80089-80363(-) (10)//scaffold_37:92873-93156(+) (11)//scaffold_4:12364829-12365112(+) (11)//scaffold_4:12546648-12546931(-) (11)//scaffold_4:12634391-12634674(+) (11)//scaffold_41:4478-4761(+) (11)//scaffold_41:74757-75040(+) (11)//scaffold_5:10085550-10094562(+) (11)//scaffold_5:10225828-10226111(-) (11)//scaffold_54:1008-1288(-) (10)//scaffold_55:64027-64310(-) (11)//scaffold_6:14884427-14884710(-) (11)//scaffold_6:14940050-14940333(-) (11)//scaffold_6:15209538-15209821(+) (10)//scaffold_7:8082326-8082609(+) (11)//scaffold_72:46298-46581(+) (11)//scaffold_8:16099215-16099498(-) (11)//scaffold_85:32194-32477(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220712.1.S1_at	B	B1S	POPTR_0004s09535	POPTR_0004s09535 (0:17)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220719.1.S1_at	B	B1S	POPTR_0019s12830	POPTR_0019s12830 (7:211)	NA	NA	NA	NA	AT5G56940.1	Ribosomal protein S16 family protein 	NA	NA	Medtr2g046330.1	Ribosomal protein S16 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220720.1.S1_x_at	B	B5S	POPTR_0019s12570	POPTR_0019s13020 (0:449)//POPTR_0019s12760 (0:447)//POPTR_0019s13010 (0:431)//POPTR_0019s12570 (0:431)//POPTR_0019s12730 (0:413)	scaffold_19:13758907-13759195(+) (10)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.220740.1.S1_at	B	B2S	POPTR_0005s03400	POPTR_0005s03400 (3:543)//POPTR_0005s03020 (0:539)	NA	NA	Q9SZ67	Probable WRKY transcription factor 19	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.220765.1.S1_at	B	B1S	POPTR_0018s10670	POPTR_0018s10670 (4:266)	NA	NA	Q8L7Z0	Probable cyclic nucleotide-gated ion channel 17	AT4G30360.1	cyclic nucleotide-gated channel 17 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.220785.1.S1_at	B	B1S	POPTR_0011s10860	POPTR_0011s10860 (0:224)	scaffold_11:13397948-13398179(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220785.1.S1_x_at	B	B2S	POPTR_0011s10860	POPTR_0011s10860 (3:516)//POPTR_0011s10830 (0:18)	scaffold_11:13397948-13398176(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220797.1.S1_at	B	B3A	POPTR_0001s18520	POPTR_0002s25460 (0:211)//POPTR_0017s09375 (0:185)//POPTR_0001s18520 (0:160)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220797.1.S1_x_at	B	B3A	POPTR_0001s18520	POPTR_0017s09375 (0:227)//POPTR_0002s25460 (0:226)//POPTR_0001s18520 (0:175)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220801.1.S1_at	B	B1S	POPTR_0011s01310	POPTR_0011s01310 (0:134)	scaffold_11:837693-838122(-) (9)	NA	NA	NA	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	NA	NA	Medtr6g008750.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.220803.1.S1_at	B	B1S	POPTR_0004s23440	POPTR_0004s23440 (6:577)	NA	NA	NA	NA	AT1G57770.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g62510.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220806.1.S1_at	B	B1S	POPTR_0403s00200	POPTR_0403s00200 (8:58)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220809.1.S1_at	B	B1S	POPTR_0856s00210	POPTR_0856s00210 (7:343)	scaffold_1528:4220-4563(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220839.1.S1_at	B	B2S	POPTR_0007s06560	POPTR_0006s17780 (5:1019)//POPTR_0007s06560 (8:980)	scaffold_7:4961630-4963722(+) (9)	NA	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220848.1.S1_at	B	B1S	POPTR_0001s45120	POPTR_0001s45120 (1:2159)	scaffold_1:43748051-43748172(+) (10)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.220848.1.S1_x_at	B	B1S	POPTR_0001s45120	POPTR_0001s45120 (4:2248)	scaffold_1:43747544-43748171(+) (10)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.220849.1.S1_at	B	B1S	POPTR_0001s45120	POPTR_0001s45120 (0:256)	scaffold_1:43746044-43746343(+) (11)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.220850.1.S1_at	B	B2S	POPTR_0017s04200	POPTR_0017s04190 (0:3606)//POPTR_0017s04200 (2:1050)	NA	NA	Q9FID6	Probable receptor-like protein kinase At5g39020	AT5G38260.1	Protein kinase superfamily protein 	LOC_Os01g02300.1	"receptor kinase ORK10, putative, expressed"	Medtr1g034870.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.220854.1.S1_at	B	B1S	POPTR_0003s14120	POPTR_0003s14120 (1:536)	NA	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT4G10950.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os02g18870.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g009110.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.220854.1.S1_s_at	B	B1S	POPTR_0003s14120	POPTR_0003s14120 (6:823)	NA	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT4G10950.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os02g18870.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g009110.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.220890.1.S1_at	B	B1S	POPTR_0015s02570	POPTR_0015s02570 (3:489)	scaffold_15:1921771-1922311(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220890.1.S1_s_at	B	B1S	POPTR_0015s02570	POPTR_0015s02570 (6:373)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220905.1.S1_at	B	B2S	POPTR_0006s02940	POPTR_0006s02940 (8:174)//POPTR_0097s00240 (8:174)	NA	NA	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.220916.1.S1_s_at	B	B4S	POPTR_0012s12310	POPTR_0012s12310 (8:32)//POPTR_0012s15030 (8:32)//POPTR_0012s12340 (8:32)//POPTR_0012s15070 (8:32)	NA	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220922.1.S1_x_at	B	B1S	POPTR_0288s00200	POPTR_0288s00200 (6:152)	scaffold_12:1080153-1080305(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220927.1.S1_at	B	B4S	POPTR_0001s43550	POPTR_0001s43550 (7:420)//POPTR_0001s45120 (0:387)//POPTR_0065s00210 (0:369)//POPTR_0065s00220 (0:234)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr7g105090.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220928.1.S1_x_at	B	B2S	POPTR_0065s00200	POPTR_0065s00200 (8:368)//POPTR_0001s44590 (3:358)	scaffold_1:43744052-43744420(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr3g076270.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.220933.1.S1_at	B	B1S	POPTR_0001s43650	POPTR_0001s43650 (6:524)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	AC225526_3.1	NB-ARC; AAA ATPase AC225526.7 19758-13755 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.220938.1.S1_at	B	B1S	POPTR_0003s01200	POPTR_0003s01200 (0:449)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.220939.1.S1_at	B	B1S	POPTR_0007s07590	POPTR_0007s07590 (7:1853)	NA	NA	P31414	Pyrophosphate-energized vacuolar membrane proton pump 1	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220953.1.S1_x_at	B	B1S	POPTR_0012s03270	POPTR_0012s03270 (3:73)	scaffold_12:2575164-2575408(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220958.1.S1_at	B	B1S	POPTR_0013s14270	POPTR_0013s14270 (0:525)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220958.1.S1_s_at	B	B1S	POPTR_0013s14270	POPTR_0013s14270 (1:274)	scaffold_13:14537582-14537995(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220964.1.S1_at	B	B1S	POPTR_0183s00220	POPTR_0183s00220 (1:40)	scaffold_183:20349-22379(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220983.1.S1_at	B	B1S	POPTR_0005s01100	POPTR_0005s01100 (7:1400)	NA	NA	NA	NA	AT1G58190.2	receptor like protein 9 	LOC_Os09g25540.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g166640.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.220983.1.S1_x_at	B	B1S	POPTR_0005s01100	POPTR_0005s01100 (8:690)	NA	NA	NA	NA	AT1G58190.2	receptor like protein 9 	LOC_Os09g25540.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g166640.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.22099.1.S1_a_at	B	B1S	POPTR_0008s17230	POPTR_0008s17230 (6:1034)	scaffold_8:11574195-11575347(-) (11)	NA	Q94AR8	3-isopropylmalate dehydratase	AT4G13430.1	isopropyl malate isomerase large subunit 1 	LOC_Os02g03260.1	"3-isopropylmalate dehydratase large subunit 2, putative, expressed"	Medtr1g065760.1	Cis-homoaconitase; ; ; 	GO:0008152|metabolic process	NA	NA
PtpAffx.220992.1.S1_at	B	B6S	POPTR_0019s01430	POPTR_0019s01470 (0:322)//POPTR_0019s01400 (0:322)//POPTR_0019s01380 (0:319)//POPTR_0121s00220 (0:319)//POPTR_0019s01350 (0:310)//POPTR_0019s01430 (3:302)	NA	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220995.1.S1_x_at	B	B4S	POPTR_0006s05790	POPTR_0001s24020 (0:231)//POPTR_0006s12880 (3:216)//POPTR_0009s03110 (2:121)//POPTR_0006s05790 (3:121)	NA	NA	NA	NA	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220996.1.S1_at	B	B1S	POPTR_0012s13390	POPTR_0012s13390 (3:469)	NA	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr1g129250.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.221070.1.S1_at	B	B1S	POPTR_0014s05160	POPTR_0014s05160 (6:1662)	scaffold_14:3939500-3942673(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22108.1.S1_at	B	B1S	POPTR_0016s13360	POPTR_0016s13360 (7:765)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221080.1.S1_at	B	B2S	POPTR_0014s04990	POPTR_0014s04990 (6:1990)//POPTR_0014s04980 (5:557)	scaffold_14:3829202-3837020(-) (11)	NA	NA	NA	AT5G51160.1	Ankyrin repeat family protein 	LOC_Os06g19370.1	"cadmium tolerance factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221083.1.S1_at	B	B1S	POPTR_0014s04940	POPTR_0014s04940 (6:416)	scaffold_14:3819243-3819913(-) (9)	NA	NA	NA	AT5G50140.1	Ankyrin repeat family protein 	NA	NA	Medtr2g122370.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221095.1.S1_at	B	B1S	POPTR_0014s04690	POPTR_0014s04690 (1:1052)	scaffold_14:3600024-3601326(+) (11)	NA	NA	NA	AT1G02120.1	GRAM domain family protein 	LOC_Os07g30940.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221103.1.S1_at	B	B2S	POPTR_0014s04610	POPTR_0014s04610 (6:629)//POPTR_0014s04600 (5:501)	scaffold_14:3525807-3529865(+) (11)	NA	Q8L9K1	Ethylene-responsive transcription factor 13	AT2G44840.1	ethylene-responsive element binding factor 13 	LOC_Os02g43790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr8g105160.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.221109.1.S1_at	B	B1S	POPTR_0014s04530	POPTR_0014s04530 (8:1335)	NA	NA	NA	NA	AT1G05940.1	cationic amino acid transporter 9 	LOC_Os02g43860.1	"amino acid permease, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221119.1.S1_at	B	B1S	POPTR_0014s04290	POPTR_0014s04290 (8:196)	scaffold_14:3356261-3356710(+) (10)	NA	O64792	Phosphatidylinositol N-acetylglucosaminyltransferase subunit P	AT2G39445.1	"Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit "	LOC_Os03g43900.1	"phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221126.1.S1_at	B	B1S	POPTR_0014s04100	POPTR_0014s04100 (4:597)	scaffold_14:3267851-3269061(+) (9)	NA	Q9ZU75	Probable NEDD8-conjugating enzyme Ubc12-like	AT2G18600.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os08g28680.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221128.1.S1_at	B	B1S	POPTR_0014s04090	POPTR_0014s04090 (8:619)	scaffold_14:3263580-3264399(+) (11)	NA	Q8LFA9	Methyltransferase-like protein 2	AT1G19340.1	Methyltransferase MT-A70 family protein 	LOC_Os03g10224.1	"MT-A70 domain containing protein, expressed"	NA	NA	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008168|methyltransferase activity	NA
PtpAffx.221211.1.S1_at	B	B1S	POPTR_0014s02110	POPTR_0014s02110 (7:1205)	NA	NA	NA	NA	NA	NA	NA	NA	AC235748_9.1	"Transcription factor, MADS-box AC235748.1 27637-29898 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221222.1.S1_at	B	B1S	POPTR_0014s01900	POPTR_0014s01900 (3:100)	scaffold_14:1727202-1727444(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221231.1.S1_x_at	B	B3S	POPTR_0015s14930	POPTR_0015s14930 (5:1823)//POPTR_0015s14910 (1:965)//POPTR_0015s14920 (0:627)	NA	NA	NA	NA	AT3G58480.1	calmodulin-binding family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221260.1.S1_at	B	B1S	POPTR_0013s12450	POPTR_0013s12450 (8:1393)	scaffold_13:13113415-13114808(+) (9)	NA	Q9CAU1	Serine carboxypeptidase-like 3	AT1G73280.1	serine carboxypeptidase-like 3 	LOC_Os10g01110.1	"OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g019170.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.221273.1.S1_at	B	B1S	POPTR_0013s12210	POPTR_0013s12210 (7:931)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221276.1.S1_at	B	B1S	POPTR_0010s10030	POPTR_0010s10030 (3:140)	scaffold_13:12820837-12820907(-) (9)//scaffold_581:975-1117(-) (11)	NA	Q9SBA7	Sugar transport protein 8	AT5G26250.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.221276.1.S1_x_at	B	B1S	POPTR_0010s10030	POPTR_0010s10030 (5:140)	scaffold_13:12820803-12820907(-) (9)//scaffold_581:975-1117(-) (11)	NA	Q9SBA7	Sugar transport protein 8	AT5G26250.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.221297.1.S1_at	B	B1S	POPTR_0013s11700	POPTR_0013s11700 (2:333)	scaffold_13:12371646-12373308(+) (10)	NA	NA	NA	AT4G16070.1	"Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 "	LOC_Os02g54010.1	"lipase class 3 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221311.1.S1_s_at	B	B2S	POPTR_0013s11390	POPTR_0013s11390 (8:31)//POPTR_0013s11450 (8:31)	NA	NA	Q8BGE5	Fanconi anemia group M protein homolog	AT1G35530.2	DEAD/DEAH box RNA helicase family protein  	LOC_Os11g07870.1	"DEAD/DEAH box helicase domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.221325.1.S1_at	B	B1A	POPTR_0689s00200	POPTR_0689s00200 (6:353)	scaffold_13:11848396-11848850(-) (9)	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr7g099470.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221339.1.S1_at	B	B3S	POPTR_0013s10170	POPTR_0013s10150 (3:676)//POPTR_0013s10170 (7:577)//POPTR_0013s10160 (3:431)	scaffold_13:10159950-10166337(+) (9)	NA	Q8GYB8	12-oxophytodienoate reductase 2	AT1G76690.1	12-oxophytodienoate reductase 2 	LOC_Os06g11240.1	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006930.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.221351.1.S1_s_at	B	B1S	POPTR_0001s39470	POPTR_0001s39470 (4:258)	scaffold_1:38656762-38657162(+) (10)//scaffold_14:14644955-14645413(+) (10)//scaffold_584:11217-11675(-) (11)	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221367.1.S1_at	B	B6S	POPTR_0015s12510	POPTR_0015s12600 (0:407)//POPTR_0015s15920 (0:395)//POPTR_0088s00240 (0:386)//POPTR_0015s12560 (0:383)//POPTR_0015s12510 (0:323)//POPTR_0088s00200 (0:322)	NA	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221383.1.S1_at	B	B1S	POPTR_0011s13690	POPTR_0011s13690 (3:707)	NA	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os04g40570.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221398.1.S1_x_at	B	B1S	POPTR_0017s05800	POPTR_0017s05800 (4:401)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221414.1.S1_x_at	B	B1S	POPTR_0016s09960	POPTR_0016s09960 (7:2419)	NA	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g63150.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221423.1.S1_at	B	B2S	POPTR_0018s03840	POPTR_0018s04330 (0:353)//POPTR_0018s03840 (0:353)	NA	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g040530.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221423.1.S1_x_at	B	B3S	POPTR_0018s03840	POPTR_0018s03840 (0:403)//POPTR_0018s04330 (0:387)//POPTR_0018s03970 (0:376)	NA	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g040530.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221442.1.S1_at	B	B1S	POPTR_0015s05710	POPTR_0015s05710 (7:296)	NA	NA	Q9SH59	Reticulon-like protein B3	AT1G64090.1	Reticulan like protein B3 	LOC_Os05g45050.2	"reticulon domain containing protein, putative, expressed"	Medtr1g126140.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.221468.1.S1_x_at	B	B1S	POPTR_0011s06090	POPTR_0011s06090 (4:487)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221475.1.S1_s_at	B	B2S	POPTR_0002s07660	POPTR_0002s07670 (8:31)//POPTR_0002s07660 (8:31)	NA	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221476.1.S1_at	B	B3S	POPTR_0027s00320	POPTR_0027s00330 (4:788)//POPTR_0027s00320 (4:422)//POPTR_0003s02260 (1:34)	NA	NA	NA	NA	AT2G26590.3	regulatory particle non-ATPase 13 	LOC_Os05g51640.2	"adhesion regulating molecule family, putative, expressed"	Medtr4g161200.1	Adhesion regulating molecule 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221484.1.S1_at	B	B1S	POPTR_0003s02410	POPTR_0003s02410 (7:1831)	NA	NA	Q0WV90	Topless-related protein 1	AT1G80490.1	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221486.1.S1_at	B	B1S	POPTR_0003s02430	POPTR_0003s02430 (8:770)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221498.1.S1_at	B	B1S	POPTR_0003s02650	POPTR_0003s02650 (5:56)	NA	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT1G52540.1	Protein kinase superfamily protein 	LOC_Os02g09359.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g126640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221509.1.S1_at	B	B1S	POPTR_0003s02955	POPTR_0003s02955 (7:943)	scaffold_3:3160926-3161988(+) (10)	NA	Q8LGU1	ABC transporter C family member 8	AT3G21250.2	multidrug resistance-associated protein 6 	LOC_Os05g10730.2	"ABC transporter, ATP-binding protein, putative, expressed"	AC235757_52.1	"Cyclic peptide transporter; HAD-superfamily subfamily IB hydrolase, hypothetical 1 AC235757.1 217448-224457 E EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.221510.1.S1_at	B	B2S	POPTR_0003s02960	POPTR_0001s20710 (0:1201)//POPTR_0003s02960 (7:1189)	NA	NA	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT3G13690.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	Medtr2g121520.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221515.1.S1_at	B	B1S	POPTR_0003s03025	POPTR_0003s03025 (8:333)	NA	NA	NA	NA	AT4G01560.1	Ribosomal RNA processing Brix domain protein 	LOC_Os06g04600.2	"Brix domain containing protein, putative, expressed"	AC233657_19.1	Brix AC233657.1 109798-104495 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221524.1.S1_at	B	B1S	POPTR_0003s04540	POPTR_0003s04540 (7:3148)	NA	NA	Q93ZM7	"Chaperonin CPN60-like 2, mitochondrial"	AT3G13860.1	heat shock protein 60-3A 	LOC_Os05g46290.1	"T-complex protein, putative, expressed"	Medtr8g018680.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221527.1.S1_at	B	B2S	POPTR_0003s04430	POPTR_0003s04360 (6:394)//POPTR_0003s04430 (7:394)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221538.1.S1_at	B	B4S	POPTR_0003s04260	POPTR_0019s02860 (0:296)//POPTR_0003s04260 (0:291)//POPTR_0003s04290 (0:285)//POPTR_0018s14150 (0:266)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.221539.1.S1_at	B	B1S	POPTR_0003s04260	POPTR_0003s04260 (8:619)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.221539.1.S1_x_at	B	B1S	POPTR_0003s04260	POPTR_0003s04260 (5:987)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.221540.1.S1_x_at	B	B4S	POPTR_0003s04280	POPTR_0003s04280 (0:1585)//POPTR_0019s02880 (0:622)//POPTR_0018s14430 (0:602)//POPTR_0008s18520 (0:469)	NA	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221555.1.S1_at	B	B1S	POPTR_0017s01965	POPTR_0017s01965 (7:102)	NA	NA	NA	NA	AT4G05540.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g49270.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221555.1.S1_x_at	B	B1S	POPTR_0017s01965	POPTR_0017s01965 (7:176)	NA	NA	NA	NA	AT4G05540.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g49270.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221561.1.S1_at	B	B4S	POPTR_0017s01900	POPTR_0017s01900 (8:886)//POPTR_0017s01910 (3:663)//POPTR_0017s01930 (1:663)//POPTR_0017s01940 (0:259)	scaffold_17:1397817-1404962(+) (11)	NA	Q00416	Helicase SEN1	AT1G65810.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g49340.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr5g084200.1	"tRNA-splicing endonuclease positive effector-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221577.1.S1_x_at	B	B1S	POPTR_0017s01670	POPTR_0017s01670 (6:437)	scaffold_96:11814-20760(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221580.1.S1_at	B	B8S	POPTR_0017s01590	POPTR_0017s01620 (0:513)//POPTR_0017s01610 (0:498)//POPTR_0017s01630 (0:497)//POPTR_0017s01600 (0:497)//POPTR_0017s01590 (6:477)//POPTR_0018s02660 (0:472)//POPTR_0017s01580 (0:402)//POPTR_0017s01550 (0:399)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221581.1.S1_at	B	B1S	POPTR_0017s01550	POPTR_0017s01550 (1:142)	scaffold_17:1099507-1099955(+) (9)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43010.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr7g088340.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221586.1.S1_at	B	B1S	POPTR_0017s01470	POPTR_0017s01470 (6:138)	NA	NA	NA	NA	AT3G03270.2	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g53320.1	"universal stress protein domain containing protein, putative, expressed"	Medtr5g084990.2	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.221602.1.S1_at	B	B1S	POPTR_0017s01170	POPTR_0017s01170 (8:428)	scaffold_17:836289-837558(-) (11)	NA	Q1PE04	F-box/LRR-repeat protein 25	AT5G02920.1	F-box/RNI-like superfamily protein 	NA	NA	Medtr7g014770.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221603.1.S1_at	B	B1S	POPTR_0017s01150	POPTR_0017s01150 (0:184)	scaffold_17:830385-830766(+) (9)	NA	Q9SW09	40S ribosomal protein S10-1	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.2	"Plectin/S10, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221631.1.S1_at	B	B1S	POPTR_0004s04710	POPTR_0004s04710 (6:1853)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221636.1.S1_at	B	B1S	POPTR_0008s01820	POPTR_0008s01820 (8:346)	NA	NA	Q9LZ17	40S ribosomal protein S17-4	AT5G04800.4	Ribosomal S17 family protein 	LOC_Os03g01900.1	"40S ribosomal protein S17, putative, expressed"	AC146550_7.1	Ribosomal protein S17e AC146550.40 29233-28681 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.221639.1.S1_at	B	B1S	POPTR_0009s00310	POPTR_0009s00310 (6:243)	scaffold_8:16204831-16205074(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221646.1.S1_at	B	B1S	POPTR_0019s08950	POPTR_0019s08950 (7:667)	NA	NA	Q9ASX5	"Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic"	AT5G05200.1	Protein kinase superfamily protein 	LOC_Os07g12530.1	"ABC1 family domain containing protein, putative, expressed"	Medtr5g076860.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221658.1.S1_at	B	B1A	POPTR_0006s19400	POPTR_0006s19400 (4:429)	NA	NA	NA	NA	AT4G30840.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g16600.1	"WD-40 repeat protein family, putative, expressed"	Medtr8g144730.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221661.1.S1_x_at	B	B3S	POPTR_0004s17210	POPTR_0004s17210 (4:488)//POPTR_0018s03280 (0:485)//POPTR_0001s43770 (3:485)	NA	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	Medtr7g040700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221666.1.S1_at	B	B6S	POPTR_0008s18640	POPTR_0008s18510 (0:1581)//POPTR_0008s18500 (0:1541)//POPTR_0008s18640 (5:1290)//POPTR_0018s14180 (0:1285)//POPTR_0018s14450 (5:1284)//POPTR_0008s18490 (0:919)	NA	NA	Q9ZPS9	Serine/threonine-protein kinase BRI1-like 2	AT1G07390.2	receptor like protein 1 	LOC_Os06g04830.1	"leucine rich repeat protein, putative, expressed"	AC233100_74.1	Leucine-rich repeat AC233100.6 329525-327081 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.221666.1.S1_x_at	B	B6S	POPTR_0008s18640	POPTR_0008s18510 (0:1581)//POPTR_0008s18500 (0:1541)//POPTR_0008s18640 (4:1290)//POPTR_0018s14180 (0:1285)//POPTR_0018s14450 (4:1284)//POPTR_0008s18490 (0:919)	NA	NA	Q9ZPS9	Serine/threonine-protein kinase BRI1-like 2	AT1G07390.2	receptor like protein 1 	LOC_Os06g04830.1	"leucine rich repeat protein, putative, expressed"	AC233100_74.1	Leucine-rich repeat AC233100.6 329525-327081 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.221667.1.S1_at	B	B4S	POPTR_0019s03970	POPTR_0019s03720 (0:492)//POPTR_0019s03700 (2:492)//POPTR_0019s03970 (3:486)//POPTR_0922s00200 (1:195)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.221681.1.S1_at	B	B9S	POPTR_0011s06100	POPTR_0011s06100 (8:140)//POPTR_0011s06110 (8:140)//POPTR_0011s06570 (8:140)//POPTR_0011s08020 (8:140)//POPTR_0011s03210 (3:139)//POPTR_0011s06620 (3:138)//POPTR_0011s06550 (6:66)//POPTR_0011s06170 (8:66)//POPTR_0011s06700 (8:66)	NA	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G29720.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221706.1.S1_at	B	B1A	POPTR_0017s09950	POPTR_0017s09950 (0:64)	scaffold_17:8728438-8729660(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221707.1.S1_at	B	B1S	POPTR_1006s00200	POPTR_1006s00200 (8:2042)	scaffold_1006:1506-4360(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221707.1.S1_x_at	B	B1S	POPTR_1006s00200	POPTR_1006s00200 (8:2042)	scaffold_1006:1484-4360(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221713.1.S1_x_at	B	B6S	POPTR_0035s00410	POPTR_0043s00210 (2:337)//POPTR_0017s14590 (2:336)//POPTR_0017s13770 (2:336)//POPTR_0043s00260 (1:335)//POPTR_0004s11060 (1:335)//POPTR_0035s00410 (8:316)	NA	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.2	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.2	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077250.1	"DNA-directed RNA polymerase, bacteriophage type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221726.1.S1_at	B	B1S	POPTR_0016s03140	POPTR_0016s03140 (8:325)	NA	NA	Q08891	Fatty acyl-CoA reductase 2	AT3G11980.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os03g07140.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221735.1.S1_at	B	B1A	POPTR_0015s00890	POPTR_0015s00890 (2:47)	scaffold_15:511731-512285(+) (10)	NA	NA	NA	AT5G53650.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g40650.1	expressed protein	Medtr3g123140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221741.1.S1_at	B	B1S	POPTR_0004s03810	POPTR_0004s03810 (7:172)	scaffold_4:2679751-2679988(-) (11)	NA	Q96376	S-linalool synthase	AT1G61120.1	terpene synthase 04 	LOC_Os04g52230.1	"ent-kaurene synthase, chloroplast precursor, putative, expressed"	Medtr2g014530.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.221742.1.S1_s_at	B	B1S	POPTR_0013s06210	POPTR_0013s06210 (3:136)	scaffold_13:4603558-4603798(-) (11)	NA	Q9SYG9	Cation/calcium exchanger 4	AT5G17850.1	Sodium/calcium exchanger family protein 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr7g103490.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.22177.1.A1_at	B	B1S	POPTR_0009s16860	POPTR_0009s16860 (5:186)	NA	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.221773.1.S1_at	B	B1S	POPTR_0003s01280	POPTR_0003s01280 (1:1370)	NA	NA	Q6P5E4	UDP-glucose:glycoprotein glucosyltransferase 1	AT1G71220.2	"UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups "	LOC_Os02g44510.1	"UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed"	Medtr2g007060.1	UDP-glucose:Glycoprotein Glucosyltransferase 	GO:0006486|protein amino acid glycosylation	GO:0003980|UDP-glucose:glycoprotein glucosyltransferase activity	NA
PtpAffx.221793.1.S1_at	B	B1S	POPTR_0014s14390	POPTR_0014s14390 (4:217)	NA	NA	Q9FFD0	Putative auxin efflux carrier component 8	AT5G16530.1	Auxin efflux carrier family protein 	LOC_Os01g69070.1	"auxin efflux carrier component, putative, expressed"	Medtr7g089430.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.221797.1.S1_at	B	B1S	POPTR_0008s15510	POPTR_0008s15510 (6:160)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221797.1.S1_s_at	B	B1S	POPTR_0008s15510	POPTR_0008s15510 (4:709)	scaffold_8:10301781-10302594(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221802.1.S1_at	B	B1S	POPTR_0420s00220	POPTR_0420s00220 (2:2298)	NA	NA	NA	NA	AT2G32040.1	Major facilitator superfamily protein 	LOC_Os07g07654.1	"BT1 family protein, putative, expressed"	Medtr3g068240.1	Biopterin transport-related protein BT1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221819.1.S1_at	B	B1S	POPTR_0017s08950	POPTR_0017s08950 (7:416)	NA	NA	Q9FFX4	Zinc finger protein KNUCKLES	AT5G14010.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os07g40300.1	"ZOS7-10 - C2H2 zinc finger protein, expressed"	Medtr7g094440.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221820.1.S1_at	B	B3S	POPTR_0016s02661	POPTR_0016s02730 (0:2794)//POPTR_0016s02661 (0:862)//POPTR_0016s02740 (0:172)	NA	NA	Q0JC27	Protein NLP2	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221821.1.S1_at	B	B4S	POPTR_0016s02680	POPTR_0016s02730 (4:692)//POPTR_0016s02680 (7:692)//POPTR_0016s02750 (5:682)//POPTR_0016s02740 (0:12)	NA	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os10g14230.1	"transposon protein, putative, unclassified"	AC235022_16.1	"Zinc finger, BED-type predicted AC235022.1 101864-97385 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding	NA
PtpAffx.221821.1.S1_x_at	B	B4S	POPTR_0016s02680	POPTR_0016s02730 (7:785)//POPTR_0016s02680 (8:785)//POPTR_0016s02750 (4:710)//POPTR_0016s02740 (1:65)	scaffold_16:1321498-1330013(+) (9)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os10g14230.1	"transposon protein, putative, unclassified"	AC235022_16.1	"Zinc finger, BED-type predicted AC235022.1 101864-97385 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding	NA
PtpAffx.221832.1.S1_at	B	B1S	POPTR_0025s00430	POPTR_0025s00430 (5:324)	NA	NA	Q39224	Protein SRG1	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08060.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.221832.1.S1_x_at	B	B1S	POPTR_0025s00430	POPTR_0025s00430 (8:369)	NA	NA	Q39224	Protein SRG1	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08060.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.221844.1.S1_at	B	B1S	POPTR_0012s09870	POPTR_0012s09870 (0:372)	NA	NA	Q9FMT4	SWI/SNF complex component SNF12 homolog	AT5G14170.1	SWIB/MDM2 domain superfamily protein 	LOC_Os04g31320.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr8g109310.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221868.1.S1_at	B	B2S	POPTR_0011s01970	POPTR_0011s02000 (2:3188)//POPTR_0011s01970 (8:2483)	NA	NA	Q41141	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta	AT1G12000.1	Phosphofructokinase family protein 	LOC_Os06g13810.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed"	Medtr8g147360.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221870.1.S1_x_at	B	B9S	POPTR_0011s01670	POPTR_0011s01670 (5:541)//POPTR_0011s01650 (0:533)//POPTR_0011s01760 (3:533)//POPTR_0011s01340 (0:533)//POPTR_0266s00010 (0:530)//POPTR_0011s01956 (0:323)//POPTR_0011s05930 (0:316)//POPTR_0011s01815 (0:261)//POPTR_0011s01810 (0:151)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr5g043910.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.221919.1.S1_at	B	B1S	POPTR_0008s13150	POPTR_0008s13150 (3:581)	NA	NA	NA	NA	AT1G70750.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221919.1.S1_x_at	B	B1S	POPTR_0008s13150	POPTR_0008s13150 (4:581)	NA	NA	NA	NA	AT1G70750.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221920.1.S1_at	B	B3S	POPTR_0005s03020	POPTR_0005s03330 (0:278)//POPTR_0005s03090 (0:278)//POPTR_0005s03020 (0:254)	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.221920.1.S1_x_at	B	B5S	POPTR_0005s03190	POPTR_0005s03490 (3:520)//POPTR_0005s03330 (0:517)//POPTR_0005s03190 (3:509)//POPTR_0005s03090 (0:483)//POPTR_0005s03070 (0:153)	NA	NA	Q40392	TMV resistance protein N	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	NA	GO:0005515|protein binding	NA
PtpAffx.221934.1.S1_at	B	B1S	POPTR_0012s14170	POPTR_0012s14170 (3:626)	NA	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os06g03930.1	"cytochrome P450 86A1, putative, expressed"	AC233070_8.1	Cytochrome P450 AC233070.4 41303-37114 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.221960.1.S1_at	B	B1S	POPTR_0005s11280	POPTR_0005s11280 (8:447)	scaffold_5:8176793-8176976(+) (9)	NA	Q9EQH3	Vacuolar protein sorting-associated protein 35	AT2G17790.1	VPS35 homolog A 	LOC_Os03g58700.1	"vacuolar protein sorting-associated protein 35, putative, expressed"	Medtr5g022510.1	Vacuolar protein sorting-associated protein 35 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22198.1.S1_at	B	B2S	POPTR_0014s10880	POPTR_0014s10870 (1:5534)//POPTR_0014s10880 (4:488)	NA	NA	Q9FWX7	ABC transporter B family member 11	AT1G02520.1	P-glycoprotein 11 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.221984.1.S1_at	B	B1S	POPTR_0005s12130	POPTR_0005s12130 (6:402)	NA	NA	P24068	Ocs element-binding factor 1	AT1G75390.1	basic leucine-zipper 44 	LOC_Os08g26880.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.221991.1.S1_at	B	B1A	POPTR_0005s12430	POPTR_0005s12430 (3:374)	scaffold_5:9185782-9186393(+) (9)	NA	NA	NA	AT2G18360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g44960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g093180.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222020.1.S1_x_at	B	B4S	POPTR_0011s01920	POPTR_0011s01705 (4:248)//POPTR_0011s01840 (3:244)//POPTR_0011s01920 (5:241)//POPTR_2359s00010 (1:202)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g41540.4	"disease resistance RPP8-like protein 3, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.222021.1.S1_at	B	B2S	POPTR_0006s27270	POPTR_0006s27270 (0:227)//POPTR_0896s00200 (0:176)	scaffold_6:25240005-25240243(-) (11)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.222047.1.S1_x_at	B	B2S	POPTR_0001s24230	POPTR_0001s24230 (6:321)//POPTR_0013s09235 (0:76)	scaffold_1:2621903-2622224(+) (11)//scaffold_11:3913314-3913635(-) (11)//scaffold_5:17085538-17085859(-) (9)//scaffold_501:27865-28186(-) (11)//scaffold_8:425542-425821(+) (9)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os02g37790.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.222052.1.S1_at	B	B1S	POPTR_0006s21530	POPTR_0006s21530 (8:1216)	NA	NA	NA	NA	AT5G06440.3	BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). 	LOC_Os11g36070.3	expressed protein	AC233682_33.1	"Myosin head, motor region; WGR; Glycosyl hydrolases 38, C-terminal AC233682.2 126964-129412 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222055.1.S1_at	B	B1S	POPTR_0006s21500	POPTR_0006s21500 (7:170)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222062.1.S1_at	B	B1S	POPTR_0013s03640	POPTR_0013s03640 (6:681)	NA	NA	O74343	Putative pseudouridine synthase C1A4.09	AT3G04820.1	Pseudouridine synthase family protein 	LOC_Os01g56620.1	"pseudouridylate synthase, putative, expressed"	Medtr7g140700.1	"RNA binding ^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222072.1.S1_at	B	B1S	POPTR_0015s01340	POPTR_0015s01340 (0:403)	NA	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g27570.1	"OsFBA3 - F-box and FBA domain containing protein, expressed"	Medtr2g029990.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222078.1.S1_x_at	B	B1S	POPTR_0010s04010	POPTR_0010s04010 (0:308)	NA	NA	B0YPN8	Ribulose bisphosphate carboxylase large chain	ATCG00490.1	ribulose-bisphosphate carboxylases 	LOC_Os10g21268.1	"ribulose bisphosphate carboxylase large chain precursor, putative, expressed"	Medtr7g021740.1	"Ribulose bisphosphate carboxylase, large chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
PtpAffx.222103.1.S1_at	B	B1S	POPTR_0013s14260	POPTR_0013s14260 (4:386)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222104.1.S1_x_at	B	B1A	POPTR_0001s12730	POPTR_0001s12730 (1:219)	scaffold_10:19036357-19036578(+) (11)//scaffold_19:134755-134961(-) (10)//scaffold_309:19664-19885(+) (11)//scaffold_7:457885-458106(-) (11)//scaffold_9:8611513-8611734(-) (11)	NA	Q9FTZ2	"Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase"	AT1G20050.1	"C-8,7 sterol isomerase "	LOC_Os01g01369.1	"3-beta-hydroxysteroid-Delta-isomerase, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0016125|sterol metabolic process||GO:0006629|lipid metabolic process	GO:0047750|cholestenol delta-isomerase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.222108.1.S1_at	B	B1S	POPTR_0018s03820	POPTR_0018s03820 (7:312)	NA	NA	NA	NA	AT4G16130.1	arabinose kinase 	LOC_Os02g04840.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr1g010200.1	"Glycoside hydrolase, family 10; Galactokinase, glycosyltransferase N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222125.1.S1_s_at	B	B2S	POPTR_0011s03270	POPTR_0017s09270 (2:80)//POPTR_0011s03270 (6:76)	NA	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os07g35290.1	"TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr1g025630.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222133.1.S1_x_at	B	B2S	POPTR_0017s01570	POPTR_0017s01570 (2:2437)//POPTR_0017s01560 (1:91)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr7g088000.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222134.1.S1_at	B	B1S	POPTR_0017s01600	POPTR_0017s01600 (0:11)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr5g084750.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222134.1.S1_x_at	B	B1S	POPTR_0096s00240	POPTR_0096s00240 (0:11)	NA	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr7g108380.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222143.1.S1_at	B	B1S	POPTR_0001s43476	POPTR_0001s43476 (0:511)	scaffold_1:43802967-43803614(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr3g076270.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222165.1.S1_at	B	B1S	POPTR_0013s05060	POPTR_0013s05060 (0:43)	NA	NA	P52914	Nucleoside-triphosphatase	AT5G18280.1	apyrase 2 	LOC_Os03g21120.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222165.1.S1_x_at	B	B1S	POPTR_0013s05060	POPTR_0013s05060 (0:43)	NA	NA	P52914	Nucleoside-triphosphatase	AT5G18280.1	apyrase 2 	LOC_Os03g21120.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222171.1.S1_at	B	B1S	POPTR_0008s00600	POPTR_0008s00600 (7:503)	scaffold_8:251509-261381(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222187.1.S1_at	B	B3S	POPTR_0011s07910	POPTR_0011s07910 (2:504)//POPTR_0015s01010 (0:417)//POPTR_0039s00370 (0:9)	NA	NA	NA	NA	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123350.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222190.1.S1_s_at	B	B1S	POPTR_0010s03950	POPTR_0010s03950 (8:305)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.22220.2.A1_at	B	B1S	POPTR_0008s15920	POPTR_0008s15920 (0:162)	NA	NA	P23525	"37 kDa inner envelope membrane protein, chloroplastic"	AT3G63410.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g08200.1	"methyltransferase domain containing protein, putative, expressed"	Medtr1g083540.1	"37 kDa inner envelope membrane protein, chloroplast precursor, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.222200.1.S1_at	B	B1S	POPTR_0018s05910	POPTR_0018s05910 (8:285)	NA	NA	NA	NA	AT3G22440.1	FRIGIDA-like protein 	LOC_Os07g07680.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222217.1.S1_at	B	B3S	POPTR_0017s06770	POPTR_0017s06760 (7:589)//POPTR_0017s06770 (8:589)//POPTR_0017s06750 (6:589)	NA	NA	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os05g41370.1	"TKL_IRAK_DUF26-la.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr2g103510.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222218.1.S1_at	B	B1S	POPTR_0017s06700	POPTR_0017s06700 (6:245)	scaffold_17:5190886-5191131(-) (11)	NA	NA	NA	NA	NA	NA	NA	AC233661_22.1	"Serine/threonine protein kinase, active site AC233661.2 117252-119995 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222241.1.S1_at	B	B1S	POPTR_0017s06370	POPTR_0017s06370 (7:450)	scaffold_17:4889832-4890661(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222245.1.S1_at	B	B1S	POPTR_0017s06220	POPTR_0017s06220 (5:228)	scaffold_17:8169413-8169629(-) (11)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr1g087380.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.222252.1.S1_at	B	B1S	POPTR_0017s06030	POPTR_0017s06030 (8:1485)	scaffold_17:4681396-4682821(-) (9)	NA	O22243	Zinc finger CCCH domain-containing protein 31	AT2G47680.1	zinc finger (CCCH type) helicase family protein 	LOC_Os01g15300.1	"zinc finger helicase family protein, putative, expressed"	Medtr1g108430.1	"Zinc finger, CCCH-type; Beta-lactamase, class A; Helicase, C-terminal; "	NA	GO:0008270|zinc ion binding||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.222275.1.S1_at	B	B4S	POPTR_0017s05670	POPTR_0017s05690 (0:376)//POPTR_0017s05680 (0:376)//POPTR_0048s00240 (1:356)//POPTR_0017s05670 (6:255)	scaffold_17:4439498-4439901(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222276.1.S1_at	B	B1S	POPTR_0017s05660	POPTR_0017s05660 (8:197)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g111350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222279.1.S1_x_at	B	B1S	POPTR_0017s05600	POPTR_0017s05600 (5:96)	scaffold_17:4397721-4397834(-) (11)	NA	Q8WKL8	Maturase K	ATCG00040.1	maturase K 	NA	NA	Medtr3g043760.1	"Intron maturase, type II; Maturase-related, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222283.1.S1_at	B	B1S	POPTR_0017s05460	POPTR_0017s05460 (1:26)	scaffold_17:4321088-4321172(+) (11)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.222292.1.S1_at	B	B1S	POPTR_0017s05240	POPTR_0017s05240 (6:1263)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222298.1.S1_at	B	B1S	POPTR_0017s05160	POPTR_0017s05160 (8:148)	NA	NA	Q2NKQ1	Small G protein signaling modulator 1	AT2G43490.6	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g01010.1	"TBC domain containing protein, expressed"	Medtr2g097180.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.222302.1.S1_x_at	B	B1S	POPTR_0048s00200	POPTR_0048s00200 (3:775)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222335.1.S1_at	B	B1S	POPTR_0017s04440	POPTR_0017s04440 (5:315)	scaffold_17:3420951-3421567(-) (10)	NA	O48809	Leucine-rich repeat extensin-like protein 2	AT4G28380.1	Leucine-rich repeat (LRR) family protein 	LOC_Os06g49100.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g148740.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222355.1.S1_at	B	B1S	POPTR_0015s01760	POPTR_0015s01760 (0:1246)	NA	NA	NA	NA	AT4G25440.1	zinc finger WD40 repeat protein 1 	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.222361.1.S1_x_at	B	B9S	POPTR_0008s18580	POPTR_0012s10980 (4:530)//POPTR_0019s02880 (0:528)//POPTR_0003s04280 (0:520)//POPTR_0018s14430 (3:520)//POPTR_0516s00230 (3:470)//POPTR_0008s18690 (2:380)//POPTR_0018s14110 (2:379)//POPTR_0008s18580 (8:379)//POPTR_0008s18520 (0:328)	scaffold_8:12539382-12539906(-) (11)	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os01g59890.1	"pentatricopeptide, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222390.1.S1_at	B	B3S	POPTR_0003s20510	POPTR_0003s22400 (0:353)//POPTR_0003s20510 (0:353)//POPTR_0003s22230 (0:218)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT5G11290.1	Plant protein of unknown function (DUF247) 	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010560.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222390.1.S1_x_at	B	B5S	POPTR_0003s22230	POPTR_0003s22400 (0:656)//POPTR_0003s20510 (0:656)//POPTR_0003s22230 (1:525)//POPTR_0003s22370 (0:447)//POPTR_0003s22380 (0:181)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010470.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222401.1.S1_at	B	B1S	POPTR_0007s09770	POPTR_0007s09770 (3:73)	scaffold_7:9289601-9289799(+) (11)	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222411.1.S1_at	B	B1S	POPTR_0004s19630	POPTR_0004s19630 (7:169)	scaffold_4:19423998-19424526(+) (9)	NA	Q39547	Cucumisin	AT5G03620.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr7g126990.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222420.1.S1_s_at	B	B1S	POPTR_0004s19920	POPTR_0004s19920 (8:358)	scaffold_4:19579884-19580388(-) (11)	NA	B2VH13	Probable phosphoglycerate mutase gpmB	AT5G22620.2	phosphoglycerate/bisphosphoglycerate mutase family protein 	LOC_Os11g05260.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g073280.1	Phosphoglycerate/bisphosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222426.1.S1_at	B	B1S	POPTR_0004s20090	POPTR_0004s20090 (8:616)	NA	NA	Q12830	Nucleosome-remodeling factor subunit BPTF	AT5G22760.1	PHD finger family protein 	LOC_Os11g05130.1	"PHD-finger family protein, expressed"	Medtr4g073860.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22243.1.S1_at	B	B1S	POPTR_0006s14140	POPTR_0006s14140 (4:586)	NA	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222447.1.S1_at	B	B1S	POPTR_0004s20500	POPTR_0004s20500 (7:550)	scaffold_4:20042432-20043342(-) (9)	NA	P0CH35	Ubiquitin-60S ribosomal protein L40-2	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g27930.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222449.1.S1_at	B	B1S	POPTR_0004s20540	POPTR_0004s20540 (5:1119)	scaffold_4:20053765-20055516(+) (10)	NA	NA	NA	AT2G21530.1	SMAD/FHA domain-containing protein  	LOC_Os11g03390.1	"FHA domain containing protein, putative, expressed"	Medtr3g111120.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222463.1.S1_at	B	B1S	POPTR_0004s20870	POPTR_0004s20870 (7:517)	NA	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039190.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222529.1.S1_x_at	B	B8S	POPTR_0023s00655	POPTR_0008s21650 (1:180)//POPTR_0057s00200 (0:180)//POPTR_0023s00655 (4:180)//POPTR_0003s04330 (0:168)//POPTR_0012s12680 (1:142)//POPTR_0023s00640 (0:142)//POPTR_0012s12675 (1:142)//POPTR_0016s11300 (0:126)	scaffold_12:13111274-13111463(-) (11)//scaffold_12:13133350-13133539(-) (11)//scaffold_28:160033-160222(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222547.1.S1_at	B	B1S	POPTR_0014s01220	POPTR_0014s01220 (5:792)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222549.1.S1_at	B	B1S	POPTR_0014s00720	POPTR_0014s00720 (8:422)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039340.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222549.1.S1_x_at	B	B1S	POPTR_0014s00720	POPTR_0014s00720 (8:422)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g039340.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.222572.1.S1_at	B	B1S	POPTR_0006s22490	POPTR_0006s22490 (5:183)	scaffold_6:21502603-21503095(+) (11)	NA	Q9SIH5	Probable F-box protein At1g60180	AT2G36090.1	F-box family protein 	LOC_Os04g33820.1	"OsFBX132 - F-box domain containing protein, expressed"	Medtr2g107460.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222582.1.S1_at	B	B2S	POPTR_0018s13660	POPTR_0018s13660 (4:1810)//POPTR_0056s00270 (1:736)	NA	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.222583.1.S1_at	B	B1S	POPTR_0011s01400	POPTR_0011s01400 (8:31)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr7g105900.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.222584.1.S1_at	B	B1S	POPTR_0016s02680	POPTR_0016s02680 (0:446)	NA	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os10g14230.1	"transposon protein, putative, unclassified"	AC235022_16.1	"Zinc finger, BED-type predicted AC235022.1 101864-97385 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding	NA
PtpAffx.222584.1.S1_x_at	B	B1S	POPTR_0016s02680	POPTR_0016s02680 (1:446)	NA	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os10g14230.1	"transposon protein, putative, unclassified"	AC235022_16.1	"Zinc finger, BED-type predicted AC235022.1 101864-97385 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding	NA
PtpAffx.222588.1.S1_at	B	B2S	POPTR_0013s03400	POPTR_0013s03400 (0:150)//POPTR_0013s03620 (0:143)	NA	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.222595.1.S1_at	B	B1S	POPTR_0002s25930	POPTR_0002s25930 (8:220)	NA	NA	P49690	60S ribosomal protein L23	AT3G04400.1	Ribosomal protein L14p/L23e family protein 	LOC_Os10g32920.1	"ribosomal protein, putative, expressed"	Medtr7g116740.1	Ribosomal protein L14b/L23e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.222608.1.S1_at	B	B1S	POPTR_0013s14260	POPTR_0013s14260 (0:206)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222628.1.S1_at	B	B1A	POPTR_0005s03090	POPTR_0005s03090 (4:189)	NA	NA	NA	NA	AT4G36150.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222639.1.S1_at	B	B6S	POPTR_0011s07910	POPTR_0012s03190 (0:1066)//POPTR_0012s03200 (0:486)//POPTR_0011s07910 (7:270)//POPTR_0046s00230 (2:204)//POPTR_0039s00340 (0:131)//POPTR_0046s00350 (0:116)	NA	NA	NA	NA	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123350.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222648.1.S1_at	B	B1S	POPTR_0017s01320	POPTR_0017s01320 (6:58)	scaffold_1134:1452-1521(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g155760.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222648.1.S1_x_at	B	B1S	POPTR_0017s01320	POPTR_0017s01320 (6:366)	scaffold_1134:1452-1725(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr4g155760.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222654.1.S1_at	B	B2S	POPTR_0004s03130	POPTR_0001s10760 (5:445)//POPTR_0004s03130 (7:311)	scaffold_4:561633-561961(+) (9)	NA	P12628	NADP-dependent malic enzyme	AT2G19900.1	NADP-malic enzyme 1 	LOC_Os01g52500.5	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222662.1.S1_at	B	B1S	POPTR_0001s40010	POPTR_0001s40010 (6:1382)	NA	NA	B3DNN5	Anaphase-promoting complex subunit 6	AT1G78770.1	anaphase promoting complex 6 	LOC_Os03g13370.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g068500.1	"Cell division cycle protein 16 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22267.1.S1_at	B	B2S	POPTR_0596s00210	POPTR_0596s00210 (8:594)//POPTR_0007s01520 (6:576)	NA	NA	Q9LJP1	GDSL esterase/lipase 4	AT3G14225.1	GDSL-motif lipase 4 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.222682.1.S1_at	B	B1S	POPTR_0005s05860	POPTR_0005s05860 (7:380)	NA	NA	Q8LST2	Probable serine/threonine-protein kinase WNK7	AT1G49160.2	Protein kinase superfamily protein 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr4g142270.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222694.1.S1_at	B	B1S	POPTR_0005s05600	POPTR_0005s05600 (8:177)	scaffold_5:3697093-3697319(+) (11)	NA	P02877	Pro-hevein	AT3G04720.1	pathogenesis-related 4 	NA	NA	NA	NA	NA	GO:0008061|chitin binding	NA
PtpAffx.222696.1.S1_at	B	B3S	POPTR_0876s00200	POPTR_0005s05580 (5:1281)//POPTR_0876s00200 (8:640)//POPTR_0005s05570 (2:387)	scaffold_5:3687012-3690402(+) (11)	NA	P09761	Wound-induced protein WIN1	AT3G04720.1	pathogenesis-related 4 	LOC_Os11g37950.1	"WIP3 - Wound-induced protein precursor, expressed"	Medtr6g027840.1	"Glycoside hydrolase, family 19; Barwin-related endoglucanase "	GO:0050832|defense response to fungus||GO:0042742|defense response to bacterium	NA	NA
PtpAffx.222720.1.S1_at	B	B2S	POPTR_0005s04980	POPTR_0005s04980 (7:462)//POPTR_0030s00330 (2:450)	NA	NA	NA	NA	AT5G27970.2	ARM repeat superfamily protein 	LOC_Os01g56590.1	"guanine nucleotide exchange family protein, putative, expressed"	Medtr1g096700.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222732.1.S1_at	B	B1S	POPTR_0005s04690	POPTR_0005s04690 (8:1066)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222743.1.S1_at	B	B2S	POPTR_0005s04460	POPTR_0005s04460 (4:119)//POPTR_0005s04420 (3:100)	NA	NA	P37707	B2 protein	AT2G32910.1	DCD (Development and Cell Death) domain protein 	LOC_Os02g51140.1	"N-rich protein, putative, expressed"	Medtr3g151330.1	Kelch related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222755.1.S1_at	B	B1S	POPTR_0005s04110	POPTR_0005s04110 (4:171)	scaffold_5:2714395-2715697(-) (11)	NA	P48467	Kinesin heavy chain	AT3G63480.1	ATP binding microtubule motor family protein 	LOC_Os08g02380.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.222757.1.S1_at	B	B1S	POPTR_0005s04080	POPTR_0005s04080 (3:448)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222757.1.S1_x_at	B	B1S	POPTR_0005s04080	POPTR_0005s04080 (2:448)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222760.1.S1_x_at	B	B1S	POPTR_0005s04080	POPTR_0005s04080 (5:605)	scaffold_5:2694629-2701366(+) (11)//scaffold_901:4487-8670(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222792.1.S1_at	B	B1S	POPTR_0005s03350	POPTR_0005s03350 (8:601)	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.222797.1.S1_at	B	B1S	POPTR_0005s03330	POPTR_0005s03330 (5:540)	NA	NA	Q40392	TMV resistance protein N	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os08g16070.1	NB-ARC domain containing protein	Medtr8g021210.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.222798.1.S1_at	B	B1S	POPTR_0005s03280	POPTR_0005s03280 (0:83)	NA	NA	Q9SSL9	Leucine-rich repeat receptor-like protein kinase PEPR1	AT1G73080.1	PEP1 receptor 1 	LOC_Os05g07820.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative"	Medtr3g123040.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.222801.1.S1_at	B	B1S	POPTR_0005s03230	POPTR_0005s03230 (8:82)	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	NA	GO:0005515|protein binding	NA
PtpAffx.222810.1.S1_x_at	B	B10S	POPTR_0009s05880	POPTR_0009s05880 (6:342)//POPTR_0001s18480 (1:342)//POPTR_0011s02690 (4:341)//POPTR_0225s00210 (3:337)//POPTR_0018s04940 (1:290)//POPTR_0001s27340 (1:244)//POPTR_0002s22010 (2:200)//POPTR_0278s00220 (4:158)//POPTR_0005s26060 (2:158)//POPTR_0003s03110 (0:62)	scaffold_1:5455931-5456179(-) (9)//scaffold_1:46146223-46146471(+) (9)//scaffold_16:8894856-8895104(+) (9)//scaffold_4:17282810-17283058(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222818.1.S1_at	B	B4S	POPTR_0005s13320	POPTR_0005s13320 (7:446)//POPTR_0005s18750 (7:440)//POPTR_0005s13330 (7:437)//POPTR_0005s18710 (7:437)	NA	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222857.1.S1_x_at	B	B3S	POPTR_0013s14610	POPTR_0013s14600 (1:1596)//POPTR_0191s00230 (0:377)//POPTR_0013s14610 (4:32)	scaffold_13:14771277-14780177(-) (9)	NA	Q5QJC3	5' exonuclease Apollo	AT1G27410.1	DNA repair metallo-beta-lactamase family protein 	LOC_Os01g57440.1	"DNA repair metallo-beta-lactamase, putative, expressed"	Medtr7g099460.1	DNA repair metallo-beta-lactamase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222861.1.S1_at	B	B3S	POPTR_0011s10190	POPTR_0011s10190 (0:563)//POPTR_0011s10230 (0:98)//POPTR_0011s10270 (0:62)	NA	NA	P72580	Prenyl transferase	AT1G78510.2	solanesyl diphosphate synthase 1 	LOC_Os05g50550.1	"polyprenyl synthetase, putative, expressed"	NA	NA	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.222861.1.S1_x_at	B	B3S	POPTR_0011s10190	POPTR_0011s10190 (1:563)//POPTR_0011s10230 (1:98)//POPTR_0011s10270 (0:62)	NA	NA	P72580	Prenyl transferase	AT1G78510.2	solanesyl diphosphate synthase 1 	LOC_Os05g50550.1	"polyprenyl synthetase, putative, expressed"	NA	NA	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.222876.1.S1_at	B	B1S	POPTR_0005s05170	POPTR_0005s05170 (3:322)	scaffold_1306:493-3657(+) (10)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222882.1.S1_at	B	B1S	POPTR_0006s16290	POPTR_0006s16290 (4:149)	scaffold_6:14215458-14215801(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222893.1.S1_at	B	B1S	POPTR_0019s11590	POPTR_0019s11590 (8:181)	NA	NA	P08575	Receptor-type tyrosine-protein phosphatase C	AT1G71860.3	protein tyrosine phosphatase 1 	LOC_Os12g07590.2	"Protein-tyrosine phosphatase domain containing protein, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0004725|protein tyrosine phosphatase activity	NA
PtpAffx.222896.1.S1_at	B	B1S	POPTR_0008s01700	POPTR_0008s01700 (2:103)	scaffold_8:825594-825804(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os11g05690.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222899.1.S1_at	B	B3S	POPTR_0019s01760	POPTR_0019s01740 (4:499)//POPTR_0019s01720 (4:363)//POPTR_0019s01760 (6:351)	NA	NA	Q9F131	3-hydroxybenzoate 6-hydroxylase 1	AT5G05320.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g05920.1	expressed protein	Medtr5g013360.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222907.1.S1_at	B	B1S	POPTR_0004s18300	POPTR_0004s18300 (3:134)	scaffold_4:18236663-18236840(-) (11)	NA	NA	NA	AT5G05320.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g05880.1	"monooxygenase, putative, expressed"	Medtr5g013370.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222907.1.S1_x_at	B	B1S	POPTR_0004s18300	POPTR_0004s18300 (4:156)	scaffold_4:18236663-18236862(-) (11)	NA	NA	NA	AT5G05320.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g05880.1	"monooxygenase, putative, expressed"	Medtr5g013370.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222912.1.S1_at	B	B2S	POPTR_0003s22170	POPTR_0003s22170 (3:907)//POPTR_0108s00270 (3:334)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222927.1.S1_at	B	B3S	POPTR_0162s00310	POPTR_0162s00310 (8:668)//POPTR_0008s01560 (5:548)//POPTR_0008s01630 (0:537)	NA	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222927.1.S1_x_at	B	B3S	POPTR_0008s01560	POPTR_0162s00310 (8:792)//POPTR_0008s01560 (8:672)//POPTR_0008s01630 (3:661)	scaffold_162:49720-50434(-) (9)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g42570.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222949.1.S1_at	B	B1S	POPTR_0018s14520	POPTR_0018s14520 (3:587)	NA	NA	Q8VYA3	Wall-associated receptor kinase-like 10	AT1G79680.1	WALL ASSOCIATED KINASE (WAK)-LIKE 10 	LOC_Os05g04460.1	OsWAK56 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.222958.1.S1_x_at	B	B3S	POPTR_0014s00370	POPTR_0019s10800 (7:173)//POPTR_0014s00370 (7:173)//POPTR_0014s00360 (5:150)	NA	NA	P0C8Y0	Camelliol C synthase	AT1G78955.1	camelliol C synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.222961.1.S1_at	B	B1S	POPTR_0017s06240	POPTR_0017s06240 (3:104)	scaffold_17:4818166-4818416(+) (10)//scaffold_19:1751025-1751275(-) (11)//scaffold_427:6352-6601(-) (9)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os10g01750.1	"retrotransposon protein, putative, unclassified"	Medtr3g076270.1	NB-ARC 	GO:0006915|apoptosis	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.222974.1.S1_at	B	B1S	POPTR_0008s22990	POPTR_0008s22990 (8:570)	scaffold_8:18142199-18142876(-) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	LOC_Os03g12350.4	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.22299.1.S1_at	B	B1S	POPTR_0001s06290	POPTR_0001s06290 (7:387)	scaffold_1:4841491-4842493(+) (10)	NA	Q94FT2	F-box protein SKIP5	AT3G54480.1	SKP1/ASK-interacting protein 5 	LOC_Os07g46555.1	F-box domain containing protein	Medtr3g020190.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223010.1.S1_at	B	B6S	POPTR_0011s01340	POPTR_0021s00210 (0:123)//POPTR_0011s01755 (0:119)//POPTR_0011s01350 (0:119)//POPTR_0011s01650 (0:119)//POPTR_0011s01340 (0:119)//POPTR_0011s05930 (0:114)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g14220.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223010.1.S1_x_at	B	B4S	POPTR_0011s01340	POPTR_0011s01755 (0:153)//POPTR_0011s01350 (0:153)//POPTR_0021s00210 (0:123)//POPTR_0011s01340 (0:119)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g14220.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223011.1.S1_x_at	B	B2S	POPTR_0157s00235	POPTR_1538s00200 (0:438)//POPTR_0157s00235 (0:373)	NA	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223012.1.S1_x_at	B	B7S	POPTR_0011s01920	POPTR_0011s01920 (7:166)//POPTR_0011s01315 (1:166)//POPTR_0011s01770 (1:166)//POPTR_0011s01805 (2:166)//POPTR_2359s00010 (1:161)//POPTR_0001s36450 (0:152)//POPTR_0011s01705 (0:14)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g41540.4	"disease resistance RPP8-like protein 3, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.223013.1.S1_at	B	B2S	POPTR_0576s00200	POPTR_0576s00200 (4:438)//POPTR_0011s01330 (1:93)	NA	NA	NA	NA	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g012180.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223018.1.S1_at	B	B3S	POPTR_0004s02820	POPTR_0972s00200 (6:466)//POPTR_0004s02820 (7:466)//POPTR_0004s02790 (6:466)	NA	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223043.1.S1_at	B	B1S	POPTR_0001s45480	POPTR_0001s45480 (8:813)	scaffold_1:45973761-45974574(+) (9)	NA	O65351	Subtilisin-like protease	AT1G32940.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr4g132770.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.223051.1.S1_at	B	B3S	POPTR_0013s04980	POPTR_0013s04980 (6:436)//POPTR_0016s12150 (1:434)//POPTR_0013s04970 (3:434)	NA	NA	P54769	Tyrosine/DOPA decarboxylase 2	AT2G20340.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os10g26110.1	"decarboxylase, putative, expressed"	Medtr7g117100.1	Pyridoxal-dependent decarboxylase; ; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.223053.1.S1_at	B	B1S	POPTR_0001s36280	POPTR_0001s36280 (6:341)	NA	NA	Q9LMA1	Probable flavin-containing monooxygenase 1	AT1G19250.1	flavin-dependent monooxygenase 1 	LOC_Os03g08410.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr8g132980.1	"Amine oxidase; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223065.1.S1_x_at	B	B6S	POPTR_0046s00280	POPTR_0046s00230 (2:229)//POPTR_0039s00340 (0:229)//POPTR_0046s00280 (3:229)//POPTR_0046s00330 (0:229)//POPTR_0015s01010 (0:202)//POPTR_0011s07840 (0:150)	NA	NA	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223090.1.S1_at	B	B1S	POPTR_0017s00660	POPTR_0017s00660 (8:109)	NA	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223108.1.S1_at	B	B2S	POPTR_0010s08920	POPTR_0010s08920 (7:263)//POPTR_0008s16050 (0:231)	scaffold_10:9721608-9722179(-) (9)	NA	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os02g45750.1	"protein kinase domain containing protein, expressed"	Medtr5g045500.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223125.1.S1_at	B	B2S	POPTR_0015s06540	POPTR_0015s06530 (4:1794)//POPTR_0015s06540 (7:531)	scaffold_15:7477879-7481017(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223129.1.S1_at	B	B1S	POPTR_0015s06440	POPTR_0015s06440 (3:557)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223129.1.S1_x_at	B	B1S	POPTR_0015s06440	POPTR_0015s06440 (4:557)	scaffold_15:7229200-7229771(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223145.1.S1_x_at	B	B1S	POPTR_0012s12180	POPTR_0012s12180 (0:424)	scaffold_12:12404233-12409224(-) (10)//scaffold_12:14922242-14922643(+) (10)	NA	O48651	Squalene monooxygenase	AT4G37760.1	squalene epoxidase 3 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.223153.1.S1_x_at	B	B3S	POPTR_0003s16760	POPTR_0003s16760 (8:597)//POPTR_0001s13620 (1:569)//POPTR_0015s15880 (4:562)	scaffold_11:5395106-5395700(+) (11)	NA	NA	NA	AT1G24265.2	Protein of unknown function (DUF1664) 	LOC_Os01g01070.2	expressed protein	Medtr7g022170.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223165.1.S1_at	B	B2S	POPTR_0013s11390	POPTR_0013s11390 (4:1441)//POPTR_0013s11450 (4:1189)	NA	NA	Q8BGE5	Fanconi anemia group M protein homolog	AT1G35530.2	DEAD/DEAH box RNA helicase family protein  	LOC_Os11g07870.1	"DEAD/DEAH box helicase domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.223177.1.S1_x_at	B	B2S	POPTR_0011s05820	POPTR_0011s05820 (8:852)//POPTR_0011s05790 (4:654)	NA	NA	O80961	MLO-like protein 12	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr4g108950.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.223204.1.S1_at	B	B2S	POPTR_0019s14320	POPTR_0019s14410 (2:530)//POPTR_0019s14320 (2:378)	NA	NA	Q8LEE9	Fasciclin-like arabinogalactan protein 12	AT5G60490.1	FASCICLIN-like arabinogalactan-protein 12 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223223.1.S1_at	B	B1S	POPTR_0018s13480	POPTR_0018s13480 (4:255)	NA	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0003676|nucleic acid binding||GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0008270|zinc ion binding	NA
PtpAffx.223228.1.S1_at	B	B1S	POPTR_0006s24530	POPTR_0006s24530 (3:171)	NA	NA	Q66GS2	"Probable beta-1,3-galactosyltransferase 12"	AT2G26100.1	Galactosyltransferase family protein 	LOC_Os06g06280.2	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.223228.1.S1_x_at	B	B2S	POPTR_0006s24530	POPTR_0006s24530 (6:2183)//POPTR_0018s05200 (2:982)	NA	NA	Q66GS2	"Probable beta-1,3-galactosyltransferase 12"	AT2G26100.1	Galactosyltransferase family protein 	LOC_Os06g06280.2	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.223233.1.S1_at	B	B1S	POPTR_0002s07570	POPTR_0002s07570 (6:394)	NA	NA	Q9LP03	"Pentatricopeptide repeat-containing protein At1g43980, mitochondrial"	AT1G43980.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g32090.1	"pentatricopeptide, putative"	Medtr5g008630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223244.1.S1_at	B	B1S	POPTR_0004s23180	POPTR_0004s23180 (8:1955)	NA	NA	Q40863	Embryogenesis-associated protein EMB8	AT5G49950.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g35730.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g122270.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223264.1.S1_at	B	B1S	POPTR_0004s23570	POPTR_0004s23570 (7:385)	scaffold_4:22245467-22247017(+) (10)	NA	P00054	Cytochrome c	AT4G10040.1	cytochrome c-2 	LOC_Os05g34770.1	"cytochrome c, putative, expressed"	Medtr5g008520.1	"Cytochrome c, monohaem "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223278.1.S1_at	B	B1S	POPTR_0004s23780	POPTR_0004s23780 (3:1076)	scaffold_4:22397730-22399605(+) (11)	NA	NA	NA	AT5G49880.1	mitotic checkpoint family protein 	LOC_Os01g65580.3	"mitotic checkpoint family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223289.1.S1_at	B	B1S	POPTR_0606s00210	POPTR_0606s00210 (4:312)	scaffold_606:7796-8317(+) (11)	NA	O81488	PHD finger protein At5g26210	AT2G02470.1	alfin-like 6 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223302.1.S1_x_at	B	B6S	POPTR_0004s24050	POPTR_0004s24050 (5:536)//POPTR_0001s43910 (2:536)//POPTR_0007s08670 (2:535)//POPTR_0007s08660 (1:475)//POPTR_0016s11070 (1:218)//POPTR_0004s24040 (4:209)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223342.1.S1_at	B	B2S	POPTR_0019s13850	POPTR_0019s13850 (6:435)//POPTR_0019s13790 (4:433)	scaffold_19:14710168-14710486(-) (9)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03450.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr4g079350.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223342.1.S1_x_at	B	B3S	POPTR_0019s13850	POPTR_0019s13850 (5:506)//POPTR_0019s13790 (3:504)//POPTR_0045s00220 (0:383)	NA	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03450.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr4g079350.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223368.1.S1_at	B	B1S	POPTR_0013s08240	POPTR_0013s08240 (8:2977)	NA	NA	Q9CYI4	Putative RNA-binding protein Luc7-like 1	AT3G03340.1	LUC7 related protein 	LOC_Os03g62640.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223380.1.S1_at	B	B1S	POPTR_0013s08420	POPTR_0013s08420 (3:26)	scaffold_13:7557945-7557985(-) (9)	NA	NA	NA	AT3G02790.1	zinc finger (C2H2 type) family protein 	LOC_Os06g49490.1	"ZOS6-10 - C2H2 zinc finger protein, expressed"	Medtr7g089600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223405.1.S1_at	B	B1S	POPTR_0006s23870	POPTR_0006s23870 (0:345)	NA	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.223407.1.S1_x_at	B	B1S	POPTR_0027s00420	POPTR_0027s00420 (1:531)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223412.1.S1_at	B	B2S	POPTR_0003s02865	POPTR_0001s15665 (0:319)//POPTR_0003s02865 (2:300)	scaffold_17:6990949-6991270(+) (11)	NA	Q6XKE6	Genome polyprotein	NA	NA	LOC_Os06g18164.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223412.1.S1_x_at	B	B2S	POPTR_0001s15665	POPTR_0001s15665 (1:339)//POPTR_0003s02865 (1:300)	scaffold_17:6990929-6991270(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g15730.1	conserved hypothetical protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.223417.1.S1_at	B	B1S	POPTR_0017s08510	POPTR_0017s08510 (2:156)	scaffold_17:7092156-7092885(+) (9)	NA	NA	NA	AT3G23900.3	RNA recognition motif (RRM)-containing protein 	LOC_Os01g01150.3	"RNA recognition motif, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.223420.1.S1_at	B	B1S	POPTR_0017s08580	POPTR_0017s08580 (5:132)	scaffold_17:7181863-7182381(-) (11)	NA	Q9LIS3	UDP-glucuronate 4-epimerase 6	AT3G23820.1	UDP-D-glucuronate 4-epimerase 6 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr3g105090.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.223424.1.S1_at	B	B2S	POPTR_0017s08760	POPTR_0001s32930 (0:291)//POPTR_0017s08760 (7:227)	scaffold_17:7368408-7368697(+) (11)	NA	Q9LW32	"Pentatricopeptide repeat-containing protein At3g26782, mitochondrial"	AT3G26782.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g20420.1	"tetratricopeptide-like helical, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223426.1.S1_at	B	B1S	POPTR_0017s08780	POPTR_0017s08780 (8:550)	NA	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os02g52860.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr7g096810.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223435.1.S1_at	B	B3S	POPTR_0003s18480	POPTR_0003s18480 (0:147)//POPTR_0112s00230 (0:147)//POPTR_0075s00210 (0:147)	scaffold_17:7605383-7605533(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os02g56370.1	"OsWAK20 - OsWAK receptor-like protein kinase, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.223435.1.S1_x_at	B	B5S	POPTR_0003s18440	POPTR_0075s00210 (0:168)//POPTR_0003s18480 (0:166)//POPTR_0112s00230 (0:166)//POPTR_0003s18440 (0:166)//POPTR_0075s00240 (0:166)	scaffold_17:7605383-7605568(+) (11)	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.223449.1.S1_at	B	B1S	POPTR_0017s09740	POPTR_0017s09740 (8:569)	NA	NA	NA	NA	AT5G14105.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g44160.1	expressed protein	Medtr3g008890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223459.1.S1_at	B	B1S	POPTR_0022s00710	POPTR_0022s00710 (2:237)	scaffold_17:8602686-8602918(+) (10)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT1G78560.1	Sodium Bile acid symporter family 	LOC_Os12g07270.1	"bile acid sodium symporter family protein, putative, expressed"	Medtr8g118790.2	Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.223463.1.S1_at	B	B1S	POPTR_0017s09930	POPTR_0017s09930 (5:1123)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223463.1.S1_x_at	B	B1S	POPTR_0017s09930	POPTR_0017s09930 (7:1149)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223476.1.S1_at	B	B1S	POPTR_0005s03420	POPTR_0005s03420 (6:1272)	NA	NA	O81635	Kinesin-4	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.223476.1.S1_x_at	B	B1S	POPTR_0005s03420	POPTR_0005s03420 (8:1318)	NA	NA	O81635	Kinesin-4	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.223488.1.S1_at	B	B2S	POPTR_0014s11670	POPTR_0008s19540 (3:737)//POPTR_0014s11670 (8:214)	NA	NA	O22267	Histidine kinase CKI1	AT2G47430.1	Signal transduction histidine kinase 	LOC_Os06g08450.1	"histidine kinase, putative"	Medtr1g106850.1	Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.223489.1.S1_at	B	B1S	POPTR_0014s11690	POPTR_0014s11690 (8:61)	NA	NA	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.1	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.223554.1.S1_x_at	B	B5S	POPTR_0001s43660	POPTR_0001s43710 (6:305)//POPTR_0001s47770 (2:305)//POPTR_0001s43660 (7:305)//POPTR_0001s42610 (5:277)//POPTR_0001s43800 (7:274)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223564.1.S1_at	B	B2S	POPTR_0031s00240	POPTR_0031s00240 (8:330)//POPTR_0019s00440 (7:324)	NA	NA	NA	NA	AT5G08450.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). 	LOC_Os07g29450.1	expressed protein	Medtr7g035190.1	Histone deacetylation protein Rxt3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223589.1.S1_at	B	B3S	POPTR_0016s02150	POPTR_0016s02150 (6:528)//POPTR_0098s00240 (3:528)//POPTR_0098s00260 (5:501)	scaffold_98:15384-26105(+) (9)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr6g014590.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223624.1.S1_s_at	B	B1A	POPTR_0012s00260	POPTR_0012s00260 (4:417)	scaffold_5:11413505-11413924(-) (9)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223644.1.S1_at	B	B1S	POPTR_0001s04010	POPTR_0001s04010 (0:298)	scaffold_1:3186470-3186831(-) (10)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.223674.1.S1_x_at	B	B4S	POPTR_0001s18555	POPTR_0862s00010 (8:294)//POPTR_0001s18555 (8:294)//POPTR_0008s07070 (6:292)//POPTR_0010s19420 (7:284)	scaffold_1:18075814-18076107(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223683.1.S1_at	B	B1S	POPTR_0130s00200	POPTR_0130s00200 (0:218)	scaffold_6:13999787-14000177(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr4g158850.1	General substrate transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223684.1.S1_at	B	B1A	POPTR_0001s46630	POPTR_0001s46630 (7:235)	scaffold_1:47008896-47009422(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223691.1.S1_at	B	B3S	POPTR_0001s43560	POPTR_0001s43560 (7:505)//POPTR_0001s43590 (5:476)//POPTR_0001s43520 (6:466)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223705.1.S1_at	B	B1S	POPTR_0014s10880	POPTR_0014s10880 (8:724)	NA	NA	Q9FWX7	ABC transporter B family member 11	AT1G02520.1	P-glycoprotein 11 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.223721.1.S1_at	B	B1S	POPTR_0009s08640	POPTR_0009s08640 (1:108)	NA	NA	P11670	Basic form of pathogenesis-related protein 1	AT4G33720.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr2g010630.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223731.1.S1_at	B	B1S	POPTR_0005s02610	POPTR_0005s02610 (3:185)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223783.1.S1_x_at	B	B2S	POPTR_0001s26710	POPTR_0001s26710 (0:116)//POPTR_0001s26750 (0:38)	NA	NA	NA	NA	NA	NA	LOC_Os01g59040.1	conserved hypothetical protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.223787.1.S1_x_at	B	B1S	POPTR_0017s06040	POPTR_0017s06040 (5:168)	NA	NA	Q9SIQ7	Calcium-dependent protein kinase 24	AT2G31500.1	calcium-dependent protein kinase 24 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g031920.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223798.1.S1_at	B	B1A	POPTR_0015s06750	POPTR_0015s06750 (3:123)	scaffold_15:7761738-7762148(+) (11)	NA	Q5EAE9	RING-H2 finger protein ATL43	AT5G05810.1	RING/U-box superfamily protein 	LOC_Os06g48065.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g149320.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223803.1.S1_at	B	B2A	POPTR_0011s16850	POPTR_0011s16850 (7:523)//POPTR_0221s00220 (7:493)	scaffold_221:23281-23805(+) (10)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os06g06380.1	"NBS-LRR type disease resistance protein, putative, expressed"	Medtr3g015730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.223811.1.S1_at	B	B1S	POPTR_0016s11745	POPTR_0016s11745 (0:90)	scaffold_588:7765-7954(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223813.1.S1_x_at	B	B3S	POPTR_0018s14450	POPTR_0008s18640 (0:1571)//POPTR_0018s14180 (0:666)//POPTR_0018s14450 (1:661)	NA	NA	NA	NA	AT1G58190.1	receptor like protein 9 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC233100_77.1	Leucine-rich repeat AC233100.6 337700-336910 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.223815.1.S1_at	B	B1S	POPTR_0060s00280	POPTR_0060s00280 (1:553)	scaffold_19:1848110-1848326(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223815.1.S1_x_at	B	B1S	POPTR_0060s00280	POPTR_0060s00280 (1:554)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223833.1.S1_at	B	B1A	POPTR_0014s11010	POPTR_0014s11010 (3:202)	scaffold_1364:3060-3280(-) (9)//scaffold_763:9062-9294(+) (11)	NA	Q9FFG8	Pentatricopeptide repeat-containing protein At5g44230	AT5G44230.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g25380.1	"pentatricopeptide, putative, expressed"	Medtr4g134470.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223839.1.S1_at	B	B1S	POPTR_0006s16920	POPTR_0006s16920 (0:332)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223844.1.S1_s_at	B	B1S	POPTR_0016s15050	POPTR_0016s15050 (3:346)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223855.1.S1_x_at	B	B7S	POPTR_0010s03755	POPTR_2452s00010 (0:321)//POPTR_0032s00210 (0:317)//POPTR_0024s00720 (0:314)//POPTR_0017s10116 (0:313)//POPTR_0010s03755 (0:256)//POPTR_0085s00010 (0:246)//POPTR_0016s11476 (0:226)	scaffold_13:11394460-11394785(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223867.1.S1_x_at	B	B6S	POPTR_0060s00240	POPTR_0123s00240 (2:587)//POPTR_0060s00250 (2:534)//POPTR_0123s00220 (1:530)//POPTR_0123s00230 (2:519)//POPTR_0287s00220 (1:446)//POPTR_0060s00240 (4:292)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.223877.1.S1_at	B	B1S	POPTR_0002s12160	POPTR_0002s12160 (2:1200)	scaffold_2:9014736-9016350(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223902.1.S1_x_at	B	B1S	POPTR_0016s11393	POPTR_0016s11393 (0:39)	scaffold_10:4832257-4832296(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223923.1.S1_at	B	B1A	POPTR_0010s18440	POPTR_0010s18440 (5:369)	NA	NA	NA	NA	AT5G24000.1	Protein of unknown function (DUF819) 	NA	NA	Medtr1g126520.1	Protein of unknown function DUF819 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223944.1.S1_at	B	B1A	POPTR_0001s00285	POPTR_0001s00285 (7:928)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223990.1.S1_at	B	B1S	POPTR_0065s00240	POPTR_0065s00240 (7:247)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224016.1.S1_at	B	B1S	POPTR_0005s19330	POPTR_0005s19330 (7:510)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224022.1.S1_s_at	B	B1S	POPTR_0001s42520	POPTR_0001s42520 (5:1617)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g092860.1	"NB-ARC; Zinc finger, C2H2-type "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224029.1.S1_at	B	B1S	POPTR_0001s26670	POPTR_0001s26670 (3:59)	scaffold_1:25736596-25737010(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224029.1.S1_x_at	B	B3S	POPTR_0001s26670	POPTR_0001s26680 (1:1911)//POPTR_0001s26690 (1:856)//POPTR_0001s26670 (3:203)	scaffold_1:25734104-25737010(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224042.1.S1_at	B	B2S	POPTR_0019s00900	POPTR_0019s00900 (8:118)//POPTR_0019s00930 (8:118)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g10550.1	"NBS-LRR disease resistance protein, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	NA	GO:0005515|protein binding	NA
PtpAffx.224048.1.S1_x_at	B	B3S	POPTR_0016s03920	POPTR_0016s03920 (3:99)//POPTR_1686s00200 (0:15)//POPTR_0016s03960 (0:15)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50180.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38380.1	plant protein of unknown function domain containing protein	Medtr7g067490.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224058.1.S1_at	B	B1S	POPTR_0009s00310	POPTR_0009s00310 (1:266)	scaffold_8:16217614-16217889(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224067.1.S1_at	B	B1A	POPTR_0017s06860	POPTR_0017s06860 (2:187)	scaffold_17:5228221-5228913(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.224095.1.S1_x_at	B	B6S	POPTR_0123s00220	POPTR_0123s00220 (8:551)//POPTR_0287s00220 (0:549)//POPTR_0123s00230 (0:546)//POPTR_0019s02080 (0:546)//POPTR_0060s00220 (0:497)//POPTR_0019s02130 (0:478)	NA	NA	O22727	Probable disease resistance protein At1g61190	AT1G61180.2	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os09g10054.1	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224098.1.S1_at	B	B1S	POPTR_0011s01940	POPTR_0011s01940 (6:252)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224100.1.S1_at	B	B3S	POPTR_0007s10800	POPTR_0011s02800 (0:217)//POPTR_0017s10000 (0:189)//POPTR_0007s10800 (0:173)	scaffold_15:7254760-7254973(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g42170.1	zinc knuckle family protein	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.224100.1.S1_x_at	B	B3S	POPTR_0011s02800	POPTR_0007s10800 (0:275)//POPTR_0011s02800 (1:275)//POPTR_0017s10000 (0:228)	scaffold_15:7254700-7254971(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g42170.1	zinc knuckle family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224108.1.S1_x_at	B	B1S	POPTR_0007s08900	POPTR_0007s08900 (4:47)	scaffold_1:17839938-17839995(+) (10)//scaffold_10:4629240-4629297(-) (10)//scaffold_10:4692393-4692450(-) (10)//scaffold_10:4724122-4724179(-) (10)//scaffold_12:6350390-6350447(-) (10)//scaffold_12:6361594-6361651(+) (10)//scaffold_12:6539483-6539540(+) (9)//scaffold_12:6561409-6561466(+) (10)//scaffold_12:12981114-12981171(-) (10)//scaffold_12:13023722-13023779(+) (10)//scaffold_12:13144035-13144092(-) (10)//scaffold_13:11529340-11529397(-) (10)//scaffold_14:15250298-15250355(-) (10)//scaffold_15:2017528-2017585(+) (10)//scaffold_15:2152434-2152491(-) (10)//scaffold_15:2182400-2182457(-) (10)//scaffold_15:2198640-2198697(+) (10)//scaffold_16:10044593-10044650(-) (10)//scaffold_16:10075093-10075150(-) (10)//scaffold_16:10120547-10120604(+) (10)//scaffold_17:9636993-9637050(+) (10)//scaffold_1732:511-568(-) (10)//scaffold_18:8393601-8393658(-) (10)//scaffold_19:7946971-7947028(+) (10)//scaffold_19:7969697-7969754(-) (10)//scaffold_19:7978368-7978425(+) (10)//scaffold_19:7982049-7982106(-) (10)//scaffold_19:8109006-8109063(-) (10)//scaffold_20:489042-489099(-) (10)//scaffold_24:437077-437134(-) (10)//scaffold_28:182942-182999(+) (10)//scaffold_4:12365940-12365997(+) (10)//scaffold_4:12545763-12545820(-) (10)//scaffold_4:12558159-12558216(-) (10)//scaffold_4:12635502-12635559(+) (10)//scaffold_41:5589-5646(+) (10)//scaffold_41:15660-15717(+) (10)//scaffold_41:75868-75925(+) (10)//scaffold_5:10086662-10086719(+) (10)//scaffold_5:10095390-10095447(+) (10)//scaffold_5:10220021-10220078(-) (10)//scaffold_54:123-180(-) (10)//scaffold_55:63142-63199(-) (10)//scaffold_57:1951-2008(+) (10)//scaffold_6:14811590-14811647(+) (10)//scaffold_6:14883542-14883599(-) (10)//scaffold_6:14939165-14939222(-) (10)//scaffold_7:8083437-8083494(+) (10)//scaffold_85:33305-33362(+) (10)//scaffold_9:481530-481587(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.22411.1.S1_at	B	B1S	POPTR_0008s04030	POPTR_0008s04030 (8:474)	NA	NA	Q2MY58	Patatin group A-3	AT2G39220.1	PATATIN-like protein 6 	LOC_Os03g14950.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g121000.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.224124.1.S1_x_at	B	B20S	POPTR_0001s04875	POPTR_0001s42600 (0:359)//POPTR_0002s14125 (1:359)//POPTR_0002s20580 (0:356)//POPTR_0019s05870 (0:356)//POPTR_0019s05600 (0:356)//POPTR_0005s08560 (0:356)//POPTR_0011s06615 (0:356)//POPTR_0001s04875 (8:353)//POPTR_0006s19900 (0:340)//POPTR_0001s31340 (0:337)//POPTR_0004s15415 (0:331)//POPTR_0017s08080 (0:331)//POPTR_0001s24530 (0:331)//POPTR_0001s30480 (0:331)//POPTR_0019s05750 (0:331)//POPTR_0001s14710 (0:331)//POPTR_0008s04520 (0:295)//POPTR_0017s10840 (0:260)//POPTR_0006s16690 (0:204)//POPTR_0472s00200 (0:34)	NA	NA	NA	NA	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os02g43780.1	"hAT dimerisation domain-containing protein, putative"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224128.1.S1_s_at	B	B2S	POPTR_0001s05210	POPTR_0001s05220 (4:381)//POPTR_0001s05210 (6:197)	scaffold_1:4003186-4007521(+) (10)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12600.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011780.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	NA	GO:0005529|sugar binding	NA
PtpAffx.224137.1.S1_at	B	B1S	POPTR_1437s00210	POPTR_1437s00210 (6:303)	scaffold_1:4980618-4986416(+) (10)//scaffold_1437:2884-3325(-) (10)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT1G70130.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os02g42780.1	"lectin receptor-type protein kinase, putative, expressed"	Medtr8g042720.1	"Cell surface antigen; DNA-directed RNA polymerase, subunit A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224151.1.S1_x_at	B	B7S	POPTR_0001s11120	POPTR_0010s09035 (0:309)//POPTR_0008s05730 (0:270)//POPTR_0436s00220 (0:267)//POPTR_0008s22040 (0:267)//POPTR_0007s05610 (0:267)//POPTR_0012s06270 (0:255)//POPTR_0001s11120 (2:252)	scaffold_1:8620250-8620521(+) (11)	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.224154.1.S1_x_at	B	B1S	POPTR_0539s00200	POPTR_0539s00200 (4:349)	scaffold_670:11287-11637(-) (11)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os07g10750.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224156.1.S1_at	B	B1S	POPTR_0001s16920	POPTR_0001s16920 (6:488)	scaffold_1:13709261-13710139(+) (9)	NA	NA	NA	AT3G13960.1	growth-regulating factor 5 	LOC_Os02g53690.1	"growth regulating factor protein, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.224173.1.S1_x_at	B	B1S	POPTR_0539s00200	POPTR_0539s00200 (0:341)	scaffold_1:23741832-23742182(+) (9)//scaffold_16:1626626-1626789(-) (10)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os07g10750.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224184.1.S1_at	B	B4S	POPTR_0001s31550	POPTR_0001s31570 (1:360)//POPTR_0001s31580 (1:360)//POPTR_0001s31550 (1:360)//POPTR_0092s00200 (1:360)	NA	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25810.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.224192.1.S1_at	B	B2S	POPTR_0001s29080	POPTR_0001s29090 (0:36)//POPTR_0001s29080 (0:36)	NA	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224192.1.S1_x_at	B	B3S	POPTR_0001s29090	POPTR_0001s29090 (6:516)//POPTR_0001s29080 (5:516)//POPTR_0001s29000 (5:516)	NA	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os01g57100.1	expressed protein	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224193.1.S1_x_at	B	B8S	POPTR_0011s01300	POPTR_0011s01300 (0:552)//POPTR_0011s01755 (0:550)//POPTR_0011s01870 (0:550)//POPTR_0011s01340 (0:550)//POPTR_0011s05930 (0:548)//POPTR_0011s01670 (0:543)//POPTR_0021s00210 (0:539)//POPTR_0069s00220 (0:539)	scaffold_1:35038700-35039241(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g12340.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224232.1.S1_at	B	B2S	POPTR_0002s07670	POPTR_0002s07660 (0:675)//POPTR_0002s07670 (7:501)	NA	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os02g02120.1	OsWAK11 - OsWAK receptor-like protein kinase	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224235.1.S1_at	B	B2S	POPTR_0002s09290	POPTR_0005s16500 (0:194)//POPTR_0002s09290 (8:186)	scaffold_2:6583963-6584162(+) (11)	NA	Q38836	Agamous-like MADS-box protein AGL11	AT1G22130.1	AGAMOUS-like 104 	LOC_Os06g11970.1	"OsMADS63 - MADS-box family gene with MIKC* type-box, expressed"	AC235748_9.1	"Transcription factor, MADS-box AC235748.1 27637-29898 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.224240.1.S1_at	B	B1S	POPTR_0002s10030	POPTR_0002s10030 (1:350)	scaffold_2:7205808-7206598(-) (9)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0030528|transcription regulator activity	NA
PtpAffx.224253.1.S1_at	B	B1S	POPTR_0002s17960	POPTR_0002s17960 (4:301)	scaffold_2:13818793-13819909(-) (10)	NA	A4GYT6	ATP-dependent Clp protease proteolytic subunit	ATCG00670.1	plastid-encoded CLP P 	LOC_Os10g21300.1	"ATP-dependent Clp protease proteolytic subunit, putative"	Medtr4g042480.1	"Peptidase S14, ClpP "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224264.1.S1_at	B	B1S	POPTR_0017s02550	POPTR_0017s02550 (2:643)	NA	NA	Q2MY51	Patatin group M-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr3g148140.1	Patatin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224275.1.S1_at	B	B1A	POPTR_0012s00260	POPTR_0012s00260 (7:369)	scaffold_5:11413133-11413471(-) (10)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224278.1.S1_x_at	B	B5S	POPTR_0005s14460	POPTR_0005s14490 (0:2745)//POPTR_0005s14460 (7:1855)//POPTR_0005s14470 (6:1513)//POPTR_0005s14480 (1:1458)//POPTR_0005s14450 (2:998)	NA	NA	Q9FNV9	Transcription factor MYB113	AT1G66370.1	myb domain protein 113 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g086800.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224282.1.S1_at	B	B2S	POPTR_0005s14810	POPTR_0005s14810 (8:330)//POPTR_0005s14780 (0:215)	NA	NA	Q9FKR0	Probable S-adenosylmethionine-dependent methyltransferase At5g38780	AT5G38780.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g56950.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.224290.1.S1_x_at	B	B1S	POPTR_0539s00200	POPTR_0539s00200 (5:251)	scaffold_1:15544764-15544890(-) (9)//scaffold_1:20896017-20896143(-) (9)//scaffold_1:24752602-24752728(-) (9)//scaffold_1:26239645-26239771(-) (9)//scaffold_1:41917590-41917716(-) (10)//scaffold_1:46146804-46147065(-) (11)//scaffold_11:15808541-15808667(+) (10)//scaffold_12:8258251-8258377(+) (10)//scaffold_16:1626655-1626781(-) (10)//scaffold_16:8895598-8895710(-) (9)//scaffold_18:7803689-7803815(-) (10)//scaffold_225:8861-8987(+) (10)//scaffold_3:217653-217914(-) (11)//scaffold_4:9115192-9115318(+) (10)//scaffold_5:24194873-24194999(+) (10)//scaffold_6:16644205-16644331(-) (9)//scaffold_6:20475997-20476123(-) (10)//scaffold_7:6586835-6586961(-) (9)//scaffold_7:8628863-8628989(+) (10)//scaffold_8:15983336-15983462(-) (10)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os07g10750.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224291.1.S1_x_at	B	B5S	POPTR_0003s01240	POPTR_0003s01240 (5:758)//POPTR_0003s01220 (4:726)//POPTR_0003s01190 (4:376)//POPTR_0003s01200 (4:231)//POPTR_0003s01245 (3:205)	scaffold_3:1049297-1093820(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.224296.1.S1_at	B	B2S	POPTR_0027s00220	POPTR_0027s00220 (7:575)//POPTR_0027s00300 (0:560)	NA	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT1G07390.3	receptor like protein 1 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.224297.1.S1_x_at	B	B9S	POPTR_0003s04260	POPTR_0019s02830 (7:416)//POPTR_0019s02860 (4:416)//POPTR_0003s04290 (0:416)//POPTR_0003s04260 (7:415)//POPTR_0008s18680 (0:396)//POPTR_0018s14180 (0:377)//POPTR_0018s14150 (0:367)//POPTR_0025s00710 (0:334)//POPTR_0018s14440 (0:303)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.2	receptor like protein 9 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.2243.4.S1_at	B	B1S	POPTR_0011s05960	POPTR_0011s05960 (8:130)	NA	NA	NA	NA	AT5G46020.1	"CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os05g43970.1	"heat- and acid-stable phosphoprotein, putative, expressed"	Medtr2g018420.1	"28 kDa heat- and acid-stable phosphoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224316.1.S1_at	B	B3S	POPTR_1359s00210	POPTR_1359s00200 (0:659)//POPTR_1359s00210 (5:601)//POPTR_0003s17135 (4:225)	scaffold_3:16586738-16587347(+) (9)	NA	Q9M8Y4	Two-component response regulator ARR22	AT5G26594.1	response regulator 24 	NA	NA	Medtr7g117350.1	Response regulator receiver 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224324.1.S1_x_at	B	B1S	POPTR_0003s20340	POPTR_0003s20340 (8:377)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.224359.1.S1_at	B	B1S	POPTR_0004s02420	POPTR_0004s02420 (0:406)	NA	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224396.1.S1_at	B	B1S	POPTR_0004s07660	POPTR_0004s07660 (1:174)	NA	NA	Q9CAL2	Cysteine-rich receptor-like protein kinase 3	AT1G70530.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 3 	LOC_Os11g28104.1	"TKL_IRAK_DUF26-lf.4 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr3g086250.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224406.1.S1_at	B	B1S	POPTR_0010s03740	POPTR_0010s03740 (0:338)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224414.1.S1_at	B	B1S	POPTR_0004s17690	POPTR_0004s17690 (8:274)	NA	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.224415.1.S1_at	B	B2S	POPTR_0320s00200	POPTR_0320s00200 (7:239)//POPTR_0004s17720 (5:197)	scaffold_320:5477-5879(-) (10)//scaffold_4:17802000-17802402(+) (10)	NA	NA	NA	AT2G21100.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	Medtr7g076490.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224417.1.S1_at	B	B1S	POPTR_0004s19310	POPTR_0004s19310 (7:947)	scaffold_4:19181174-19182735(+) (9)	NA	P16579	Acidic endochitinase WIN6	AT3G12500.1	basic chitinase 	LOC_Os05g33140.1	"CHIT5 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
PtpAffx.224441.1.S1_at	B	B2S	POPTR_0009s06950	POPTR_0009s06950 (6:326)//POPTR_0009s06960 (4:298)	scaffold_9:6618642-6622878(-) (11)	NA	Q42799	Cytochrome P450 93A2	AT4G15330.1	"cytochrome P450, family 705, subfamily A, polypeptide 1 "	LOC_Os06g30640.1	"cytochrome P450, putative"	Medtr7g111280.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224451.1.S1_at	B	B1S	POPTR_0009s03350	POPTR_0009s03350 (0:5)	scaffold_9:4001082-4001273(+) (11)	NA	NA	NA	AT3G29765.1	General transcription factor 2-related zinc finger protein 	LOC_Os04g21740.1	conserved hypothetical protein	Medtr4g154560.1	HAT dimerisation 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224458.1.S1_x_at	B	B1S	POPTR_0009s00740	POPTR_0009s00740 (7:1762)	scaffold_9:836822-838596(-) (11)	NA	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os06g43930.1	"OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.224460.1.S1_x_at	B	B4S	POPTR_0018s07670	POPTR_0054s00225 (4:276)//POPTR_0015s02530 (3:275)//POPTR_0018s07670 (4:275)//POPTR_2441s00010 (1:274)	scaffold_9:453004-453278(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224478.1.S1_at	B	B9S	POPTR_0008s20505	POPTR_0008s20505 (8:437)//POPTR_0004s08880 (7:437)//POPTR_0004s15266 (6:436)//POPTR_0015s02590 (6:436)//POPTR_0002s21295 (7:436)//POPTR_0014s05845 (7:368)//POPTR_0011s06405 (4:294)//POPTR_0007s08870 (6:294)//POPTR_0011s06925 (2:294)	scaffold_1:14734742-14735178(+) (10)//scaffold_1:40324632-40325016(+) (9)//scaffold_1:40334619-40335003(+) (9)//scaffold_11:4772901-4773323(+) (10)//scaffold_11:13802132-13802568(-) (10)//scaffold_12:2567895-2568331(-) (10)//scaffold_17:12780911-12781347(+) (10)//scaffold_17:13311114-13311518(+) (9)//scaffold_18:9454373-9454809(+) (11)//scaffold_19:8674080-8674516(+) (11)//scaffold_3:6698011-6698447(+) (10)//scaffold_4:8560408-8560844(+) (11)//scaffold_5:4211149-4211585(-) (11)//scaffold_5:18962137-18962573(-) (11)//scaffold_638:5561-5997(+) (11)//scaffold_7:7396322-7396758(-) (10)//scaffold_773:4533-4937(-) (9)	NA	NA	NA	AT4G15020.2	hAT transposon superfamily 	LOC_Os03g60800.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224483.1.S1_x_at	B	B15S	POPTR_0005s22260	POPTR_0004s03580 (5:353)//POPTR_0001s32700 (6:353)//POPTR_0002s19310 (5:353)//POPTR_0001s21560 (2:353)//POPTR_0014s17470 (1:353)//POPTR_0005s22260 (7:353)//POPTR_0016s08340 (5:353)//POPTR_0008s20310 (1:353)//POPTR_0005s20440 (4:352)//POPTR_0001s16825 (1:352)//POPTR_0002s05305 (0:345)//POPTR_0001s41615 (0:337)//POPTR_0006s11990 (0:325)//POPTR_0005s18050 (0:242)//POPTR_0003s05090 (2:139)	NA	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT4G09660.1	"CONTAINS InterPro DOMAIN/s: Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: TTF-type zinc finger protein with HAT dimerisation domain (TAIR:AT1G19260.1); Has 839 Blast hits to 796 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 438; Fungi - 0; Plants - 401; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os08g07950.1	"NB-ARC domain containing protein, expressed"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.224510.1.S1_at	B	B1A	POPTR_0006s03170	POPTR_0006s03170 (7:1707)	scaffold_6:1999397-2001910(-) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.1	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.224516.1.S1_at	B	B1S	POPTR_0006s23780	POPTR_0006s23780 (8:477)	NA	NA	Q9S9K9	Transcription factor MYB3	AT1G22640.1	myb domain protein 3 	LOC_Os06g10350.1	"MYB family transcription factor, putative, expressed"	Medtr8g105480.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224535.1.S1_at	B	B1S	POPTR_0007s00210	POPTR_0007s00210 (7:1701)	scaffold_7:13574-15284(-) (9)	NA	Q945S8	Histone-lysine N-methyltransferase ASHH3	AT2G44150.1	histone-lysine N-methyltransferase ASHH3 	LOC_Os09g13740.1	"SET domain containing protein, expressed"	Medtr6g070840.1	Nuclear protein SET; SET-related region; AWS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224571.1.S1_x_at	B	B1S	POPTR_0539s00200	POPTR_0539s00200 (3:468)	scaffold_7:10898694-10899174(-) (11)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os07g10750.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224585.1.S1_at	B	B1S	POPTR_0008s00940	POPTR_0008s00940 (7:887)	scaffold_8:446164-447281(-) (10)	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os07g36590.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	AC233661_22.1	"Serine/threonine protein kinase, active site AC233661.2 117252-119995 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224586.1.S1_at	B	B1S	POPTR_0008s01720	POPTR_0008s01720 (7:372)	scaffold_8:829786-830287(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g65510.1	"OsFBX31 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224598.1.S1_at	B	B1A	POPTR_0008s10770	POPTR_0008s10770 (1:61)	scaffold_8:6776749-6777340(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224608.1.S1_at	B	B1S	POPTR_0008s17620	POPTR_0008s17620 (6:596)	scaffold_8:11853601-11854629(+) (11)	NA	P47735	Receptor-like protein kinase 5	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os06g04830.1	"leucine rich repeat protein, putative, expressed"	Medtr2g021180.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.224614.1.S1_at	B	B1S	POPTR_0008s20800	POPTR_0008s20800 (3:199)	NA	NA	Q5R824	Carbohydrate kinase domain-containing protein	AT5G19150.2	pfkB-like carbohydrate kinase family protein 	LOC_Os11g17610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224615.1.S1_at	B	B8S	POPTR_0008s20810	POPTR_0022s00390 (1:2112)//POPTR_0008s20810 (4:1416)//POPTR_0009s00780 (0:1412)//POPTR_0007s10550 (0:719)//POPTR_0268s00210 (1:387)//POPTR_0008s20820 (4:297)//POPTR_0009s00770 (2:204)//POPTR_0007s10540 (0:19)	NA	NA	Q6NY74	Replication protein A 70 kDa DNA-binding subunit	AT1G52950.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os07g09300.1	"retrotransposon protein, putative, unclassified"	AC235009_19.1	"Nucleic acid-binding, OB-fold, subgroup AC235009.1 77250-79864 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224615.1.S1_x_at	B	B8S	POPTR_0008s20820	POPTR_0022s00390 (3:2153)//POPTR_0008s20810 (3:1416)//POPTR_0009s00780 (0:1412)//POPTR_0007s10550 (0:719)//POPTR_0268s00210 (4:428)//POPTR_0008s20820 (4:338)//POPTR_0009s00770 (3:239)//POPTR_0007s10540 (0:53)	NA	NA	NA	NA	AT5G28780.1	PIF1 helicase 	LOC_Os05g44786.1	"retrotransposon protein, putative, unclassified"	Medtr3g077250.1	"Protein of unknown function DUF889, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224623.1.S1_at	B	B8S	POPTR_0044s00240	POPTR_0044s00240 (8:535)//POPTR_0010s01980 (0:535)//POPTR_0044s00270 (0:529)//POPTR_0010s02030 (0:528)//POPTR_0010s01930 (0:524)//POPTR_0010s02040 (0:463)//POPTR_0010s02020 (0:463)//POPTR_0010s02000 (0:456)	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g095790.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.224623.1.S1_x_at	B	B10S	POPTR_0044s00240	POPTR_0010s01930 (3:2999)//POPTR_0044s00270 (4:2946)//POPTR_0010s02040 (2:2905)//POPTR_0010s02030 (3:2764)//POPTR_0010s02020 (2:2701)//POPTR_0010s01980 (2:2649)//POPTR_0044s00230 (2:2128)//POPTR_0010s01990 (2:1731)//POPTR_0044s00240 (5:1058)//POPTR_0010s02000 (1:506)	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g095790.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.224636.1.S1_s_at	B	B1S	POPTR_0010s05380	POPTR_0010s05380 (7:964)	scaffold_10:6824037-6825124(-) (11)	NA	Q9CAL2	Cysteine-rich receptor-like protein kinase 3	AT1G70530.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 3 	LOC_Os01g36790.1	"TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g035020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224648.1.S1_at	B	B1S	POPTR_0010s11630	POPTR_0010s11630 (6:275)	NA	NA	Q8LF21	Dynamin-related protein 1C	AT1G14830.1	DYNAMIN-like 1C 	LOC_Os03g50520.1	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.224672.1.S1_at	B	B2S	POPTR_0016s12600	POPTR_0016s12600 (7:193)//POPTR_0016s12610 (6:193)	scaffold_10:20296062-20296235(-) (11)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224672.1.S1_x_at	B	B2S	POPTR_0016s12600	POPTR_0016s12600 (8:210)//POPTR_0016s12610 (7:210)	scaffold_10:20296045-20296235(-) (11)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224687.1.S1_at	B	B1S	POPTR_0011s01140	POPTR_0011s01140 (3:92)	scaffold_11:661019-661205(+) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G54070.1	Ankyrin repeat family protein 	LOC_Os07g09530.1	"ankyrin repeat family protein, putative"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224688.1.S1_at	B	B3S	POPTR_0011s01030	POPTR_0011s01210 (6:709)//POPTR_0011s01030 (7:705)//POPTR_2191s00200 (3:635)	NA	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os11g24750.1	conserved hypothetical protein	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224696.1.S1_at	B	B1S	POPTR_0017s09160	POPTR_0017s09160 (7:61)	NA	NA	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os05g41370.1	"TKL_IRAK_DUF26-la.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22472.1.S1_at	B	B1S	POPTR_0015s13040	POPTR_0015s13040 (0:495)	NA	NA	Q7ZUX1	DNA-directed RNA polymerase III subunit RPC3	AT3G49000.1	RNA polymerase III subunit RPC82 family protein 	LOC_Os01g48720.1	"RNA polymerase III subunit RPC82 family protein, putative, expressed"	Medtr1g127070.2	RNA polymerase III subunit RPC82 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.224721.1.S1_at	B	B1S	POPTR_0011s03810	POPTR_0011s03810 (8:31)	NA	NA	Q9SXB5	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11305	AT1G11300.1	protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding 	LOC_Os09g37840.1	"carbohydrate binding protein, putative"	Medtr8g015070.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224727.1.S1_x_at	B	B8S	POPTR_0011s03690	POPTR_0011s03690 (6:269)//POPTR_0011s02200 (2:266)//POPTR_0011s02090 (1:266)//POPTR_0011s02160 (2:266)//POPTR_0011s03660 (2:266)//POPTR_0011s02070 (1:266)//POPTR_0011s02100 (2:266)//POPTR_0011s02060 (0:266)	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os04g53994.1	"kinase, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224729.1.S1_s_at	B	B3S	POPTR_0011s02050	POPTR_0002s21030 (4:70)//POPTR_0011s02050 (8:67)//POPTR_0011s03640 (0:15)	NA	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	NA	GO:0005529|sugar binding	NA
PtpAffx.224741.1.S1_at	B	B1S	POPTR_0007s08900	POPTR_0007s08900 (0:446)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.224805.1.S1_at	B	B1S	POPTR_0010s03740	POPTR_0010s03740 (0:71)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22486.1.S1_at	B	B1S	POPTR_0004s13455	POPTR_0004s13455 (7:402)	NA	NA	P64956	Uncharacterized protein Mb2253c	AT3G01410.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g08050.1	"retrotransposon protein, putative, unclassified"	Medtr2g120570.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	GO:0016234|inclusion body
PtpAffx.224862.1.S1_at	B	B1S	POPTR_0013s08950	POPTR_0013s08950 (8:507)	NA	NA	O31826	Putative acyl-CoA synthetase yngI	AT5G16340.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084090.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.224863.1.S1_x_at	B	B7S	POPTR_0002s07490	POPTR_0004s08880 (1:365)//POPTR_0015s02590 (1:293)//POPTR_0002s07490 (1:254)//POPTR_0013s10065 (1:77)//POPTR_0008s20505 (1:26)//POPTR_0004s15266 (1:26)//POPTR_0014s05845 (0:26)	scaffold_13:9428414-9428794(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003677|DNA binding	NA
PtpAffx.224872.1.S1_at	B	B1S	POPTR_0014s06790	POPTR_0014s06790 (8:180)	NA	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	AC233070_7.1	Cytochrome P450 AC233070.4 33530-28470 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.224901.1.S1_at	B	B1S	POPTR_0019s01080	POPTR_0019s01080 (4:295)	scaffold_19:823543-824067(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.224912.1.S1_x_at	B	B2S	POPTR_0031s00305	POPTR_0031s00305 (2:559)//POPTR_0019s00430 (1:462)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.224927.1.S1_at	B	B1S	POPTR_0078s00200	POPTR_0078s00200 (8:1145)	scaffold_78:20985-22265(+) (9)	NA	Q2MY58	Patatin group A-3	AT4G37060.1	PATATIN-like protein 5 	LOC_Os11g39990.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.224938.1.S1_at	B	B2S	POPTR_0019s04160	POPTR_0019s04160 (7:1061)//POPTR_0019s04170 (5:1047)	scaffold_19:4256468-4265289(+) (11)	NA	Q9M8Y4	Two-component response regulator ARR22	AT5G26594.1	response regulator 24 	LOC_Os03g53100.1	"response regulator receiver domain containing protein, expressed"	Medtr7g117350.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.224939.1.S1_x_at	B	B1S	POPTR_0010s03950	POPTR_0010s03950 (3:235)	scaffold_19:7824271-7838266(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.224940.1.S1_at	B	B1S	POPTR_0023s00640	POPTR_0023s00640 (0:220)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224945.1.S1_x_at	B	B2S	POPTR_0019s05410	POPTR_0019s05410 (5:578)//POPTR_0019s05420 (1:578)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g110980.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.224957.1.S1_s_at	B	B1S	POPTR_0077s00220	POPTR_0077s00220 (4:437)	scaffold_25:15956-16439(+) (11)//scaffold_5:2940904-2941387(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g16310.1	"retrotransposon protein, putative, LINE subclass"	Medtr5g074430.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.224958.1.S1_at	B	B1S	POPTR_0019s09880	POPTR_0019s09880 (2:276)	scaffold_19:11504025-11504556(+) (9)	NA	Q40392	TMV resistance protein N	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.224965.1.S1_at	B	B1S	POPTR_0019s11980	POPTR_0019s11980 (8:415)	scaffold_19:13162877-13163376(+) (11)	NA	P25803	Vignain	AT5G50260.1	Cysteine proteinases superfamily protein 	LOC_Os11g14900.5	"thiol protease SEN102 precursor, putative, expressed"	Medtr8g112770.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.224979.1.S1_at	B	B2S	POPTR_0015s00490	POPTR_0015s00480 (2:101)//POPTR_0015s00490 (3:51)	scaffold_15:275066-275641(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225002.1.S1_x_at	B	B6S	POPTR_0015s11910	POPTR_0015s12620 (0:1043)//POPTR_0015s11910 (3:1015)//POPTR_0015s12540 (3:420)//POPTR_0088s00250 (1:375)//POPTR_0015s15890 (2:357)//POPTR_0015s12630 (2:225)	scaffold_15:12767820-12769514(-) (9)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225028.1.S1_at	B	B1S	POPTR_0016s09185	POPTR_0016s09185 (7:230)	scaffold_16:7176184-7176584(+) (11)	NA	Q40392	TMV resistance protein N	AT1G27170.1	transmembrane receptors;ATP binding 	NA	NA	Medtr5g038750.1	TIR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22504.1.S1_at	B	B1S	POPTR_0009s09690	POPTR_0009s09690 (8:1086)	NA	NA	Q8L7W8	Alpha-L-fucosidase 2	AT4G34260.1	"1,2-alpha-L-fucosidases "	LOC_Os10g19880.1	"alpha-1,2-fucosidase, putative, expressed"	Medtr8g129740.1	"Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225045.1.S1_at	B	B2S	POPTR_0018s04280	POPTR_0018s03930 (3:1000)//POPTR_0018s04280 (7:970)	NA	NA	Q86TW2	Uncharacterized aarF domain-containing protein kinase 1	AT5G24810.1	ABC1 family protein 	LOC_Os06g48770.1	"OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed"	Medtr1g010020.1	"ABC-1; Penicillin-binding protein, transpeptidase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225046.1.S1_at	B	B5S	POPTR_0008s21640	POPTR_0008s21650 (0:143)//POPTR_0008s21640 (0:143)//POPTR_0010s03740 (0:143)//POPTR_0016s11396 (0:143)//POPTR_0012s12680 (0:56)	scaffold_18:8219578-8219721(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225053.1.S1_at	B	B5S	POPTR_0001s14655	POPTR_0010s00872 (0:144)//POPTR_0016s09365 (0:144)//POPTR_0001s44370 (0:144)//POPTR_0016s03650 (0:138)//POPTR_0001s14655 (0:66)	NA	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os11g14270.1	"transposon protein, putative, unclassified"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225053.1.S1_x_at	B	B9S	POPTR_0001s14655	POPTR_0003s01520 (0:294)//POPTR_0016s09365 (0:294)//POPTR_0001s44370 (0:294)//POPTR_0016s03650 (0:290)//POPTR_0010s00872 (0:282)//POPTR_0007s10360 (0:278)//POPTR_0001s14655 (0:189)//POPTR_0001s42900 (0:189)//POPTR_0010s05190 (0:51)	NA	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os11g14270.1	"transposon protein, putative, unclassified"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225068.1.S1_at	B	B1S	POPTR_0017s09390	POPTR_0017s09390 (2:76)	scaffold_18:2908914-2909178(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g26000.1	"glutamate receptor, putative"	Medtr3g138800.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.225071.1.S1_at	B	B1A	POPTR_0018s05890	POPTR_0018s05890 (3:147)	scaffold_18:5520431-5520779(+) (11)	NA	Q36996	Uncharacterized protein ycf72	NA	NA	LOC_Os10g21356.1	"uncharacterized protein ycf72, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225088.1.S1_at	B	B1S	POPTR_0025s00710	POPTR_0025s00710 (7:199)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G07390.2	receptor like protein 1 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166620.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225099.1.S1_at	B	B1S	POPTR_0018s14020	POPTR_0018s14020 (4:375)	NA	NA	O65351	Subtilisin-like protease	AT4G30020.1	PA-domain containing subtilase family protein 	LOC_Os06g48650.2	"OsSub52 - Putative Subtilisin homologue, expressed"	Medtr2g042580.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	GO:0005618|cell wall||GO:0016020|membrane
PtpAffx.225116.1.S1_s_at	B	B1S	POPTR_0010s03950	POPTR_0010s03950 (8:280)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.225117.1.S1_x_at	B	B2S	POPTR_0003s18810	POPTR_0003s18810 (4:972)//POPTR_0003s18800 (0:232)	NA	NA	P52836	Flavonol 3-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.225126.1.S1_at	B	B3S	POPTR_0019s05380	POPTR_0019s05380 (8:3061)//POPTR_0019s05390 (8:233)//POPTR_0252s00200 (8:209)	NA	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.225151.1.S1_s_at	B	B6S	POPTR_0035s00310	POPTR_0822s00200 (0:289)//POPTR_0035s00310 (0:282)//POPTR_0043s00200 (0:258)//POPTR_0043s00270 (0:206)//POPTR_0035s00335 (0:202)//POPTR_0035s00380 (0:194)	NA	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g107730.1	TIR; Disease resistance protein; Ribonuclease H 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225171.1.S1_x_at	B	B24S	POPTR_0019s05600	POPTR_0019s05600 (5:563)//POPTR_0005s08560 (3:563)//POPTR_0002s14125 (1:563)//POPTR_0001s14710 (3:563)//POPTR_0019s05870 (0:561)//POPTR_0005s12755 (2:561)//POPTR_0019s05750 (0:561)//POPTR_0001s30480 (1:560)//POPTR_0001s04875 (0:558)//POPTR_0019s08740 (4:557)//POPTR_0017s08080 (1:556)//POPTR_0003s04450 (1:554)//POPTR_0001s42600 (1:553)//POPTR_0006s19900 (0:551)//POPTR_0002s20580 (2:545)//POPTR_0004s15415 (1:510)//POPTR_0011s06615 (1:490)//POPTR_0001s24530 (3:437)//POPTR_0008s04520 (3:401)//POPTR_0009s03350 (0:350)//POPTR_0017s10840 (2:341)//POPTR_0006s16690 (0:271)//POPTR_0020s00460 (2:233)//POPTR_0472s00200 (0:117)	NA	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os01g36064.1	"hAT dimerisation domain-containing protein, putative, expressed"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.225177.1.S1_x_at	B	B12S	POPTR_0011s02060	POPTR_0011s02090 (1:111)//POPTR_0011s03690 (0:111)//POPTR_0011s03680 (1:111)//POPTR_0011s03670 (0:111)//POPTR_0011s03620 (1:111)//POPTR_0011s03720 (0:111)//POPTR_0011s02200 (1:110)//POPTR_0011s02180 (1:110)//POPTR_0011s02160 (1:110)//POPTR_0011s02100 (1:110)//POPTR_0011s02060 (1:110)//POPTR_0011s03640 (0:96)	NA	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124540.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225178.1.S1_at	B	B8S	POPTR_0011s04830	POPTR_0011s04790 (3:368)//POPTR_0011s04800 (2:368)//POPTR_0412s00210 (3:368)//POPTR_0011s04830 (7:357)//POPTR_0011s04810 (0:342)//POPTR_0412s00200 (2:330)//POPTR_0011s04850 (2:162)//POPTR_0011s04855 (0:76)	NA	NA	Q9C9D0	Sulfotransferase 16	AT1G74100.1	sulfotransferase 16 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g061400.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.225180.1.S1_x_at	B	B1S	POPTR_0010s03950	POPTR_0010s03950 (0:138)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.225181.1.S1_at	B	B1S	POPTR_0019s09870	POPTR_0019s09870 (7:407)	scaffold_2151:520-905(-) (11)	NA	Q9FH83	Probable WRKY transcription factor 52	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225193.1.S1_at	B	B1S	POPTR_0019s09040	POPTR_0019s09040 (2:135)	NA	NA	Q3ECK2	"Pentatricopeptide repeat-containing protein At1g62680, mitochondrial"	AT1G62680.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225194.1.S1_x_at	B	B3S	POPTR_0019s08830	POPTR_0019s14380 (0:684)//POPTR_0019s08830 (3:684)//POPTR_0019s08890 (1:568)	scaffold_19:10460089-10460773(-) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225210.1.S1_at	B	B1S	POPTR_0005s00830	POPTR_0005s00830 (5:924)	NA	NA	C0LGS2	Probable LRR receptor-like serine/threonine-protein kinase At4g36180	AT1G74170.1	receptor like protein 13 	LOC_Os12g11720.1	"verticillium wilt disease resistance protein precursor, putative"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225215.1.S1_x_at	B	B8S	POPTR_0007s05610	POPTR_0010s09035 (4:625)//POPTR_0436s00220 (5:593)//POPTR_0001s38150 (4:585)//POPTR_0007s05610 (6:575)//POPTR_0008s05730 (2:574)//POPTR_0012s06270 (4:573)//POPTR_0001s11120 (2:560)//POPTR_0008s22040 (1:451)	NA	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.225221.1.S1_at	B	B1A	POPTR_0252s00210	POPTR_0252s00210 (6:379)	scaffold_252:12026-12312(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225238.1.S1_at	B	B1S	POPTR_0011s01160	POPTR_0011s01160 (7:553)	NA	NA	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	LOC_Os03g61660.1	"retrotransposon protein, putative, unclassified"	Medtr5g092800.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225245.1.S1_at	B	B1S	POPTR_0009s07370	POPTR_0009s07370 (5:186)	scaffold_9:6888879-6889269(-) (11)	NA	Q1PFH7	Pentatricopeptide repeat-containing protein At1g62350	AT1G62350.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g18620.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g034340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225249.1.S1_x_at	B	B1S	POPTR_0011s16570	POPTR_0011s16570 (3:186)	NA	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225253.1.S1_at	B	B8S	POPTR_0011s16280	POPTR_0011s16260 (2:347)//POPTR_0011s16380 (6:204)//POPTR_0011s16350 (6:204)//POPTR_0011s16400 (1:168)//POPTR_0011s16280 (6:168)//POPTR_0011s16390 (0:168)//POPTR_0011s16310 (6:168)//POPTR_0011s16290 (0:168)	scaffold_11:18213711-18214063(-) (11)//scaffold_11:18242300-18242654(-) (11)//scaffold_11:18275767-18276120(-) (9)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30760.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.225261.1.S1_at	B	B1A	POPTR_0013s12800	POPTR_0013s12800 (7:418)	scaffold_13:13460662-13461235(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225274.1.S1_at	B	B1S	POPTR_0006s28850	POPTR_0006s28850 (1:673)	NA	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225275.1.S1_s_at	B	B1S	POPTR_0006s28850	POPTR_0006s28850 (8:500)	NA	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g31570.1	"disease resistance protein RGA4, putative, expressed"	Medtr3g019370.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225276.1.S1_at	B	B3S	POPTR_0006s28910	POPTR_0006s28900 (0:2840)//POPTR_0006s28905 (0:881)//POPTR_0006s28910 (7:468)	NA	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g17130.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr5g028420.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.225287.1.S1_at	B	B2S	POPTR_0006s22670	POPTR_0006s22670 (1:555)//POPTR_2523s00200 (0:553)	scaffold_6:21609102-21611243(+) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225287.1.S1_x_at	B	B2S	POPTR_0006s22670	POPTR_0006s22670 (1:555)//POPTR_2523s00200 (0:553)	scaffold_6:21609102-21611243(+) (11)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225293.1.S1_at	B	B1S	POPTR_0008s21640	POPTR_0008s21640 (0:344)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225299.1.S1_x_at	B	B14S	POPTR_0043s00240	POPTR_0035s00230 (1:712)//POPTR_0043s00230 (0:712)//POPTR_0013s10740 (0:711)//POPTR_0035s00380 (0:709)//POPTR_0035s00310 (0:708)//POPTR_0043s00270 (1:708)//POPTR_0035s00400 (1:707)//POPTR_0548s00200 (1:698)//POPTR_0043s00240 (2:697)//POPTR_0035s00335 (0:656)//POPTR_0035s00341 (0:508)//POPTR_0017s14620 (0:506)//POPTR_0043s00306 (0:477)//POPTR_0822s00200 (0:457)	NA	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225306.1.S1_s_at	B	B1S	POPTR_0007s08900	POPTR_0007s08900 (0:9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.225338.1.S1_at	B	B1S	POPTR_0006s18580	POPTR_0006s18580 (8:477)	scaffold_6:17108445-17109572(-) (9)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.2	"OsFBX331 - F-box domain containing protein, expressed"	AC233685_52.1	Cyclin-like F-box; F-box protein interaction domain AC233685.2 233595-232417 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225354.1.S1_x_at	B	B2S	POPTR_0539s00200	POPTR_0539s00200 (2:374)//POPTR_0019s05925 (0:9)	scaffold_7:8628341-8628732(+) (11)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os07g10750.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225355.1.S1_at	B	B1S	POPTR_0011s00940	POPTR_0011s00940 (8:326)	NA	NA	Q9C9H7	Receptor-like protein 12	AT3G05660.1	receptor like protein 33 	LOC_Os12g11930.1	"disease resistance protein SlVe2 precursor, putative, expressed"	Medtr5g048840.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225359.1.S1_at	B	B3S	POPTR_0004s05330	POPTR_0004s05330 (3:779)//POPTR_0017s00800 (3:754)//POPTR_0011s07630 (0:667)	scaffold_17:581060-581854(-) (9)	NA	P51850	Pyruvate decarboxylase isozyme 1	AT5G54960.1	pyruvate decarboxylase-2 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr2g019000.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.225366.1.S1_at	B	B2S	POPTR_0016s04770	POPTR_0016s04770 (6:1924)//POPTR_0016s04780 (5:580)	scaffold_16:2852154-2860225(-) (11)	NA	NA	NA	AT5G22355.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g41930.1	"DC1 domain-containing protein, putative"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.225366.1.S1_x_at	B	B1S	POPTR_0016s04770	POPTR_0016s04770 (7:522)	scaffold_16:2844637-2860185(-) (10)	NA	NA	NA	AT5G22355.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g41930.1	"DC1 domain-containing protein, putative"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.225373.1.S1_at	B	B2S	POPTR_0018s03930	POPTR_0018s03930 (7:2592)//POPTR_0018s03950 (5:2474)	NA	NA	P73627	Uncharacterized protein sll1770	AT5G24810.1	ABC1 family protein 	LOC_Os06g48770.1	"OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed"	Medtr1g010020.1	"ABC-1; Penicillin-binding protein, transpeptidase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225374.1.S1_at	B	B8S	POPTR_2523s00200	POPTR_0011s03850 (2:459)//POPTR_0011s03880 (0:446)//POPTR_0011s03820 (0:443)//POPTR_0011s03810 (0:443)//POPTR_0006s22670 (0:443)//POPTR_0011s03860 (0:442)//POPTR_0011s03830 (0:439)//POPTR_2523s00200 (4:439)	NA	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.2	S-locus lectin protein kinase family protein 	LOC_Os04g54110.1	"ARK3, putative"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.225382.1.S1_at	B	B8S	POPTR_0006s22670	POPTR_0011s03820 (0:148)//POPTR_0011s03840 (0:148)//POPTR_0011s03830 (0:148)//POPTR_0011s03880 (0:148)//POPTR_0006s22670 (0:148)//POPTR_2523s00200 (0:147)//POPTR_0011s03810 (0:139)//POPTR_0011s03870 (0:136)	NA	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225382.1.S1_x_at	B	B5S	POPTR_0006s22670	POPTR_0011s03820 (0:148)//POPTR_0011s03840 (0:148)//POPTR_0011s03830 (0:148)//POPTR_0011s03880 (0:148)//POPTR_0006s22670 (0:148)	NA	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225385.1.S1_at	B	B1S	POPTR_0012s11790	POPTR_0012s11790 (8:1473)	scaffold_12:12164685-12167297(-) (9)	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os12g41170.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225386.1.S1_at	B	B3S	POPTR_0012s11800	POPTR_0012s11750 (0:1674)//POPTR_0012s11720 (1:629)//POPTR_0012s11800 (8:613)	NA	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os12g41170.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225386.1.S1_x_at	B	B3S	POPTR_0012s11800	POPTR_0012s11750 (0:1674)//POPTR_0012s11720 (1:629)//POPTR_0012s11800 (8:613)	NA	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os12g41170.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225398.1.S1_at	B	B7S	POPTR_0001s43170	POPTR_0001s42890 (2:363)//POPTR_0001s43270 (0:350)//POPTR_0080s00240 (0:338)//POPTR_0001s43240 (1:337)//POPTR_0001s43180 (1:321)//POPTR_0001s43170 (7:321)//POPTR_0001s43260 (0:320)	NA	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225398.1.S1_x_at	B	B7S	POPTR_0001s43170	POPTR_0001s42890 (3:502)//POPTR_0001s43270 (1:485)//POPTR_0080s00240 (1:477)//POPTR_0001s43240 (1:472)//POPTR_0001s43180 (2:460)//POPTR_0001s43170 (7:460)//POPTR_0001s43260 (0:455)	NA	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g052540.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225400.1.S1_at	B	B1S	POPTR_0005s14790	POPTR_0005s14790 (6:653)	scaffold_5:11724577-11729364(+) (11)	NA	Q9FKR0	Probable S-adenosylmethionine-dependent methyltransferase At5g38780	AT1G15125.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g56950.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.225408.1.S1_at	B	B5S	POPTR_0010s01930	POPTR_0011s15760 (0:636)//POPTR_0044s00270 (8:576)//POPTR_0010s01930 (8:575)//POPTR_0010s02030 (0:542)//POPTR_0010s01940 (8:538)	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225408.1.S1_x_at	B	B5S	POPTR_0010s01930	POPTR_0011s15760 (2:636)//POPTR_0044s00270 (8:576)//POPTR_0010s01930 (8:575)//POPTR_0010s02030 (2:542)//POPTR_0010s01940 (7:538)	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225409.1.S1_at	B	B3S	POPTR_0035s00380	POPTR_0035s00400 (0:280)//POPTR_0035s00380 (0:279)//POPTR_0043s00270 (0:267)	NA	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os12g03080.1	"rp3 protein, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225423.1.S1_x_at	B	B1S	POPTR_0007s08900	POPTR_0007s08900 (2:213)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.225431.1.S1_at	B	B1S	POPTR_0012s12280	POPTR_0012s12280 (5:462)	NA	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225431.1.S1_x_at	B	B1S	POPTR_0012s12280	POPTR_0012s12280 (5:461)	NA	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g103020.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225434.1.S1_x_at	B	B9S	POPTR_0011s03870	POPTR_0011s03820 (1:475)//POPTR_0011s03810 (0:453)//POPTR_0006s22670 (1:453)//POPTR_2523s00200 (0:453)//POPTR_1224s00200 (1:390)//POPTR_0011s03860 (1:390)//POPTR_0011s03880 (1:390)//POPTR_0011s03850 (0:390)//POPTR_0011s03870 (7:389)	NA	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr2g011330.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225437.1.S1_at	B	B1S	POPTR_0012s11690	POPTR_0012s11690 (6:183)	scaffold_12:12019545-12020202(-) (10)	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os12g41170.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225439.1.S1_at	B	B2S	POPTR_0012s12700	POPTR_0012s12740 (0:686)//POPTR_0012s12700 (0:686)	scaffold_12:11871255-11872028(+) (11)	NA	Q9FKF3	Putative pectinesterase 63	AT5G61680.1	Pectin lyase-like superfamily protein 	LOC_Os01g44340.1	"pectinesterase, putative, expressed"	Medtr8g133070.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225439.1.S1_x_at	B	B2S	POPTR_0012s12700	POPTR_0012s12740 (1:686)//POPTR_0012s12700 (1:686)	scaffold_12:11871256-11872028(+) (11)	NA	Q9FKF3	Putative pectinesterase 63	AT5G61680.1	Pectin lyase-like superfamily protein 	LOC_Os01g44340.1	"pectinesterase, putative, expressed"	Medtr8g133070.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225450.1.S1_at	B	B1S	POPTR_0015s02050	POPTR_0015s02050 (3:186)	NA	NA	Q9FID6	Probable receptor-like protein kinase At5g39020	AT5G39020.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g02460.1	"receptor kinase LRK10, putative"	Medtr1g034830.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225454.1.S1_at	B	B8S	POPTR_0017s13730	POPTR_0017s13730 (0:414)//POPTR_0117s00210 (0:380)//POPTR_0035s00380 (0:378)//POPTR_0035s00210 (0:370)//POPTR_0043s00270 (0:354)//POPTR_0035s00400 (0:353)//POPTR_0017s14620 (0:345)//POPTR_0035s00335 (0:252)	NA	NA	Q40392	TMV resistance protein N	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225454.1.S1_x_at	B	B8S	POPTR_0017s13730	POPTR_0017s13730 (0:437)//POPTR_0043s00270 (0:429)//POPTR_0035s00400 (0:420)//POPTR_0017s14620 (0:402)//POPTR_0117s00210 (0:401)//POPTR_0035s00380 (0:400)//POPTR_0035s00210 (0:389)//POPTR_0035s00335 (0:322)	NA	NA	Q40392	TMV resistance protein N	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr7g087890.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225455.1.S1_x_at	B	B13S	POPTR_0011s01340	POPTR_0021s00210 (2:467)//POPTR_0011s01695 (2:467)//POPTR_0069s00220 (3:467)//POPTR_0011s01650 (3:467)//POPTR_0011s01870 (3:467)//POPTR_0011s01340 (3:467)//POPTR_0011s01755 (3:466)//POPTR_0011s03000 (1:464)//POPTR_0011s01300 (2:442)//POPTR_0011s01810 (3:442)//POPTR_0011s01670 (3:442)//POPTR_0011s05930 (3:442)//POPTR_0011s01350 (2:56)	scaffold_11:921409-921876(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g14220.2	"disease resistance protein RPM1, putative, expressed"	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.22546.1.S1_at	B	B1S	POPTR_0001s09380	POPTR_0001s09380 (8:432)	NA	NA	NA	NA	AT4G11560.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g34330.1	"BAH domain containing protein, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding	NA
PtpAffx.225460.1.S1_at	B	B5S	POPTR_0012s11720	POPTR_0012s11720 (3:239)//POPTR_0012s11660 (1:149)//POPTR_0012s11690 (1:149)//POPTR_0012s11800 (1:145)//POPTR_0012s11750 (0:140)	NA	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os12g41170.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225462.1.S1_x_at	B	B1S	POPTR_0010s03740	POPTR_0010s03740 (0:126)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225477.1.S1_x_at	B	B14S	POPTR_0005s03210	POPTR_0005s03350 (0:340)//POPTR_0005s03120 (0:340)//POPTR_0005s03070 (1:340)//POPTR_0005s03450 (1:340)//POPTR_0005s03040 (1:340)//POPTR_0005s03260 (1:340)//POPTR_0005s03330 (1:340)//POPTR_0005s03291 (0:340)//POPTR_0005s03150 (1:339)//POPTR_0005s03160 (1:335)//POPTR_0005s03500 (4:323)//POPTR_0005s03210 (4:318)//POPTR_0005s03360 (4:274)//POPTR_0005s03020 (0:243)	NA	NA	Q40392	TMV resistance protein N	AT2G20142.1	Toll-Interleukin-Resistance (TIR) domain family protein 	LOC_Os07g37950.1	expressed protein	Medtr8g021230.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.225482.1.S1_x_at	B	B3S	POPTR_0001s43410	POPTR_0001s43545 (1:397)//POPTR_0001s43410 (5:397)//POPTR_0001s43550 (0:397)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	Medtr1g062450.1	NB-ARC; AAA ATPase 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225490.1.S1_s_at	B	B3S	POPTR_0008s18640	POPTR_0008s18640 (7:78)//POPTR_0008s18420 (0:38)//POPTR_0018s14150 (0:37)	NA	NA	Q9ZPS9	Serine/threonine-protein kinase BRI1-like 2	AT1G07390.2	receptor like protein 1 	LOC_Os06g04830.1	"leucine rich repeat protein, putative, expressed"	AC233100_74.1	Leucine-rich repeat AC233100.6 329525-327081 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225490.1.S1_x_at	B	B2S	POPTR_0008s18640	POPTR_0008s18640 (3:152)//POPTR_0018s14150 (0:113)	scaffold_8:12684219-12684389(+) (10)	NA	Q9ZPS9	Serine/threonine-protein kinase BRI1-like 2	AT1G07390.2	receptor like protein 1 	LOC_Os06g04830.1	"leucine rich repeat protein, putative, expressed"	AC233100_74.1	Leucine-rich repeat AC233100.6 329525-327081 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225491.1.S1_at	B	B2S	POPTR_0008s18660	POPTR_0008s18660 (8:567)//POPTR_0008s18610 (7:501)	NA	NA	Q9C9H7	Receptor-like protein 12	AT2G25470.1	receptor like protein 21 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC235756_17.1	"Leucine-rich repeat, typical subtype AC235756.1 127596-123999 E EGN_Mt090430 200"	NA	GO:0005515|protein binding	NA
PtpAffx.225492.1.S1_at	B	B4S	POPTR_0008s18500	POPTR_0008s18680 (0:556)//POPTR_0008s18500 (0:556)//POPTR_0018s14440 (0:391)//POPTR_0008s18510 (0:124)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT4G20140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os11g40970.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g112220.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.225504.1.S1_at	B	B1S	POPTR_0006s11830	POPTR_0006s11830 (6:278)	scaffold_6:9020398-9020958(-) (11)	NA	P37122	Cytochrome P450 76A2	AT3G52970.1	"cytochrome P450, family 76, subfamily G, polypeptide 1 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr1g147240.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.225507.1.S1_at	B	B5S	POPTR_0011s02180	POPTR_0011s02180 (4:319)//POPTR_0011s02170 (0:319)//POPTR_0011s02160 (0:319)//POPTR_0002s21040 (0:319)//POPTR_0011s03690 (0:318)	NA	NA	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os04g53994.1	"kinase, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225507.1.S1_x_at	B	B5S	POPTR_0011s02180	POPTR_0011s02180 (4:319)//POPTR_0011s02170 (0:319)//POPTR_0011s02160 (1:319)//POPTR_0002s21040 (0:319)//POPTR_0011s03690 (0:318)	NA	NA	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os04g53994.1	"kinase, putative, expressed"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225515.1.S1_at	B	B1S	POPTR_0003s19910	POPTR_0003s19910 (8:36)	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225516.1.S1_at	B	B1S	POPTR_0003s19910	POPTR_0003s19910 (7:237)	scaffold_3:18531319-18532204(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039540.1	NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225519.1.S1_x_at	B	B14S	POPTR_0004s08710	POPTR_0005s03440 (5:412)//POPTR_0005s03150 (1:412)//POPTR_0005s03350 (1:412)//POPTR_0005s03120 (5:412)//POPTR_0005s03070 (5:412)//POPTR_0005s03040 (3:412)//POPTR_0005s03260 (5:412)//POPTR_0005s03330 (1:412)//POPTR_0005s03291 (3:412)//POPTR_0004s08710 (5:412)//POPTR_0005s03160 (5:412)//POPTR_0005s03450 (3:407)//POPTR_0005s03360 (2:406)//POPTR_0005s03020 (3:344)	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.22552.1.S1_at	B	B1S	POPTR_0008s06200	POPTR_0008s06200 (5:1087)	NA	NA	NA	NA	AT3G55646.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39855.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr5g088650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225527.1.S1_at	B	B4S	POPTR_0010s02020	POPTR_0010s02040 (0:355)//POPTR_0010s02020 (8:355)//POPTR_0010s02010 (0:355)//POPTR_0044s00250 (0:355)	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os04g54070.1	"receptor-like kinase, putative"	Medtr3g020990.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225528.1.S1_at	B	B5S	POPTR_0182s00200	POPTR_0182s00220 (7:535)//POPTR_0019s01560 (0:533)//POPTR_0019s01570 (0:533)//POPTR_0182s00240 (0:533)//POPTR_0182s00200 (8:482)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os08g01580.1	"NBS-LRR disease resistance protein, putative"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225533.1.S1_x_at	B	B1S	POPTR_0010s03950	POPTR_0010s03950 (7:170)	scaffold_10:4668648-4668830(+) (9)//scaffold_11:12726183-12726329(+) (10)//scaffold_13:8164837-8164983(+) (10)//scaffold_13:9828323-9834911(+) (9)//scaffold_136:51231-51413(-) (10)//scaffold_14:14891345-14891527(+) (10)//scaffold_15:7452618-7452764(-) (10)//scaffold_19:7824452-7829936(+) (10)//scaffold_19:7829754-7838350(+) (10)//scaffold_19:9135138-9135284(+) (9)//scaffold_2:19973311-19973457(+) (10)//scaffold_2:19981518-19981664(+) (10)//scaffold_2166:364-474(-) (10)//scaffold_24:314752-314898(+) (10)//scaffold_2481:580-726(+) (10)//scaffold_534:8892-9074(-) (10)//scaffold_6:20827919-20828101(-) (10)//scaffold_7:8337609-8337719(-) (10)//scaffold_9:374517-374736(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.225573.1.S1_at	B	B6S	POPTR_0027s00350	POPTR_0027s00350 (5:373)//POPTR_0003s02250 (0:323)//POPTR_0003s02080 (0:275)//POPTR_0027s00200 (0:155)//POPTR_0027s00300 (2:155)//POPTR_0027s00410 (0:155)	scaffold_27:100579-100966(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.1	receptor like protein 9 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.225583.1.S1_at	B	B6S	POPTR_0014s03290	POPTR_0014s03280 (0:344)//POPTR_0014s03290 (7:344)//POPTR_0014s03260 (0:344)//POPTR_0014s03320 (0:339)//POPTR_0014s03250 (0:338)//POPTR_0014s03330 (0:333)	NA	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.22559.1.A1_a_at	B	B1S	POPTR_0005s02170	POPTR_0005s02170 (8:342)	scaffold_5:1433422-1433948(+) (10)	NA	NA	NA	AT1G56260.1	unknown protein; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	Medtr7g138330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225597.1.S1_at	B	B1S	POPTR_0013s11150	POPTR_0013s11150 (6:455)	NA	NA	NA	NA	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os04g15910.1	"hAT dimerisation domain-containing protein, putative"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.225601.1.S1_s_at	B	B4S	POPTR_0013s08880	POPTR_0013s10710 (5:747)//POPTR_0013s08880 (7:464)//POPTR_0013s10700 (4:242)//POPTR_0013s08870 (2:242)	scaffold_13:8358662-8365567(-) (9)//scaffold_13:11038911-11042524(-) (9)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g05800.1	"retrotransposon protein, putative, unclassified"	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.225604.1.S1_at	B	B1S	POPTR_0019s13030	POPTR_0019s13030 (0:872)	NA	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g05800.1	"retrotransposon protein, putative, unclassified"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225612.1.S1_at	B	B1S	POPTR_0004s02670	POPTR_0004s02670 (6:362)	scaffold_4:1782984-1783566(-) (10)	NA	Q9SXB8	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	AT1G11330.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011400.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.225628.1.S1_at	B	B2S	POPTR_0017s01840	POPTR_0017s01840 (7:81)//POPTR_0017s01830 (0:81)	NA	NA	Q9FNE1	Cysteine-rich receptor-like protein kinase 42	AT5G40380.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 42 	LOC_Os11g28104.1	"TKL_IRAK_DUF26-lf.4 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr3g086260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225632.1.S1_at	B	B5S	POPTR_0017s03330	POPTR_0017s03320 (0:3432)//POPTR_0017s00820 (0:3401)//POPTR_0017s03330 (6:1008)//POPTR_0017s00810 (0:674)//POPTR_0017s03290 (0:522)	NA	NA	Q9SHY2	Probable metal-nicotianamine transporter YSL7	AT1G65730.1	YELLOW STRIPE like 7 	LOC_Os04g44320.1	"transposon protein, putative, unclassified, expressed"	Medtr6g089710.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225640.1.S1_at	B	B1A	POPTR_0088s00220	POPTR_0088s00220 (8:596)	scaffold_88:41509-42332(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225642.1.S1_at	B	B6S	POPTR_0015s11910	POPTR_0015s12620 (0:1043)//POPTR_0015s12540 (0:537)//POPTR_0088s00250 (0:518)//POPTR_0015s15890 (0:491)//POPTR_0015s11910 (0:471)//POPTR_0015s12630 (0:412)	NA	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225651.1.S1_at	B	B4S	POPTR_0007s10550	POPTR_0007s10550 (7:537)//POPTR_0008s20810 (5:378)//POPTR_0022s00380 (6:351)//POPTR_0268s00200 (7:351)	scaffold_1:10347592-10348043(-) (10)//scaffold_268:4179-4846(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22567.1.S1_at	B	B1S	POPTR_0010s15300	POPTR_0010s15300 (8:275)	NA	NA	Q9XGI7	Nicotianamine synthase	AT1G09240.1	nicotianamine synthase 3 	LOC_Os07g48980.1	"nicotianamine synthase, putative, expressed"	Medtr2g038330.1	Nicotianamine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0030418|nicotianamine biosynthetic process||GO:0044106|cellular amine metabolic process	GO:0030410|nicotianamine synthase activity	NA
PtpAffx.225683.1.S1_at	B	B1S	POPTR_0005s12240	POPTR_0005s12240 (3:559)	scaffold_5:9024077-9027278(+) (11)	NA	NA	NA	AT3G50920.2	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os02g47570.1	"phosphatase, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.22569.1.S1_at	B	B1S	POPTR_0018s05350	POPTR_0018s05350 (8:411)	scaffold_18:4879854-4880341(-) (9)	NA	O49006	Pectinesterase/pectinesterase inhibitor 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.225693.1.S1_at	B	B4S	POPTR_0006s28440	POPTR_0006s28440 (6:191)//POPTR_0006s28420 (4:190)//POPTR_0006s28400 (0:136)//POPTR_0006s28520 (5:127)	scaffold_6:26191657-26191848(+) (11)	NA	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.225704.1.S1_at	B	B3S	POPTR_0015s15180	POPTR_0015s15210 (3:1051)//POPTR_0015s15150 (0:908)//POPTR_0015s15180 (8:643)	NA	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225709.1.S1_at	B	B1S	POPTR_0003s03660	POPTR_0003s03660 (2:1300)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225729.1.S1_at	B	B1S	POPTR_0001s22360	POPTR_0001s22360 (0:41)	NA	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os07g47800.1	"transposon protein, putative, unclassified"	Medtr3g064360.1	"Tam3-like transposon protein; 93317-95488, related "	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.225735.1.S1_at	B	B9S	POPTR_0016s04380	POPTR_0016s04350 (6:550)//POPTR_0016s04760 (0:517)//POPTR_0016s04390 (7:514)//POPTR_0016s04770 (0:514)//POPTR_0016s04640 (1:514)//POPTR_0016s04780 (0:514)//POPTR_0016s04740 (3:508)//POPTR_0016s04400 (0:508)//POPTR_0016s04380 (7:406)	scaffold_16:2571126-2571676(+) (11)	NA	NA	NA	AT5G22355.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g42070.1	"DC1 domain-containing protein, putative, expressed"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.225759.1.S1_at	B	B8S	POPTR_0019s02760	POPTR_0019s02720 (2:958)//POPTR_0019s02760 (7:957)//POPTR_0053s00220 (4:954)//POPTR_0073s00200 (2:901)//POPTR_0019s02700 (3:859)//POPTR_0019s01910 (4:602)//POPTR_0019s02740 (1:438)//POPTR_0019s01900 (0:123)	NA	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225760.1.S1_x_at	B	B11S	POPTR_0008s21650	POPTR_0010s03740 (1:238)//POPTR_0023s00640 (0:220)//POPTR_0011s08633 (1:220)//POPTR_0017s10160 (0:219)//POPTR_0008s21640 (0:217)//POPTR_0008s21650 (8:215)//POPTR_0016s11396 (0:203)//POPTR_0012s12680 (0:140)//POPTR_0023s00655 (0:122)//POPTR_0057s00200 (0:71)//POPTR_0018s07630 (0:32)	scaffold_12:12913436-12913639(+) (9)//scaffold_18:8536940-8537143(+) (9)//scaffold_4:8095081-8095284(+) (9)//scaffold_9:494414-494617(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225770.1.S1_x_at	B	B1S	POPTR_0005s05720	POPTR_0005s05720 (1:225)	scaffold_5:3748068-3756204(-) (9)	NA	Q08112	40S ribosomal protein S15-1	AT1G04270.2	cytosolic ribosomal protein S15 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.225797.1.S1_at	B	B1S	POPTR_0003s22180	POPTR_0003s22180 (4:51)	NA	NA	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.225802.1.S1_x_at	B	B4S	POPTR_0015s15080	POPTR_0015s15080 (0:218)//POPTR_0015s15210 (0:217)//POPTR_0015s15150 (0:208)//POPTR_0015s15100 (0:204)	NA	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225806.1.S1_at	B	B3S	POPTR_0011s01890	POPTR_0011s01890 (8:493)//POPTR_0011s01958 (4:335)//POPTR_0011s01920 (0:203)	NA	NA	Q40392	TMV resistance protein N	AT1G72890.1	Disease resistance protein (TIR-NBS class) 	NA	NA	Medtr3g109820.1	TIR; Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225806.1.S1_x_at	B	B3S	POPTR_0011s01890	POPTR_0011s01890 (8:493)//POPTR_0011s01958 (6:335)//POPTR_0011s01920 (3:203)	NA	NA	Q40392	TMV resistance protein N	AT1G72890.1	Disease resistance protein (TIR-NBS class) 	NA	NA	Medtr3g109820.1	TIR; Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225815.1.S1_at	B	B4S	POPTR_0031s00200	POPTR_0019s01020 (0:250)//POPTR_0031s00200 (6:250)//POPTR_0019s01010 (0:250)//POPTR_0019s01050 (0:250)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225815.1.S1_x_at	B	B5S	POPTR_0031s00200	POPTR_0019s01020 (0:558)//POPTR_0031s00200 (6:558)//POPTR_0019s01010 (0:554)//POPTR_0019s01050 (0:553)//POPTR_0019s01080 (1:490)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.225820.1.S1_x_at	B	B5S	POPTR_0436s00220	POPTR_0010s09035 (0:529)//POPTR_0008s05730 (1:385)//POPTR_0436s00220 (2:267)//POPTR_0012s06270 (1:255)//POPTR_0008s22040 (0:250)	scaffold_436:8899-9368(-) (11)	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.225830.1.S1_at	B	B1S	POPTR_0001s42770	POPTR_0001s42770 (5:360)	NA	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225837.1.S1_x_at	B	B1S	POPTR_0007s08900	POPTR_0007s08900 (3:258)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.225839.1.S1_x_at	B	B4S	POPTR_0027s00410	POPTR_0003s02180 (0:175)//POPTR_0027s00410 (2:138)//POPTR_0027s00300 (0:128)//POPTR_0027s00200 (0:120)	scaffold_27:220389-220639(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT2G25470.1	receptor like protein 21 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.225851.1.S1_at	B	B2S	POPTR_0019s14400	POPTR_0019s14400 (8:602)//POPTR_0019s14310 (0:437)	NA	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.225862.1.S1_at	B	B1S	POPTR_0062s00250	POPTR_0062s00250 (5:844)	NA	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225862.1.S1_x_at	B	B1S	POPTR_0062s00250	POPTR_0062s00250 (4:844)	NA	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225882.1.S1_x_at	B	B1S	POPTR_0539s00200	POPTR_0539s00200 (0:242)	scaffold_1:46147017-46147260(-) (11)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os07g10750.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225885.1.S1_x_at	B	B1S	POPTR_0539s00200	POPTR_0539s00200 (0:392)	scaffold_5:6613395-6613429(+) (9)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os07g10750.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22589.1.A1_at	B	B1S	POPTR_0015s09480	POPTR_0015s09480 (7:661)	NA	NA	Q86GL4	Superoxide-generating NADPH oxidase heavy chain subunit B	AT5G50160.1	ferric reduction oxidase 8 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.225891.1.S1_at	B	B1S	POPTR_0539s00200	POPTR_0539s00200 (0:269)	scaffold_14:13341928-13342198(+) (10)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os07g10750.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225896.1.S1_x_at	B	B3S	POPTR_0010s03740	POPTR_0010s03740 (0:379)//POPTR_0023s00640 (0:258)//POPTR_0012s12680 (0:155)	scaffold_4:12233765-12234168(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225897.1.S1_s_at	B	B1S	POPTR_0010s03950	POPTR_0010s03950 (8:313)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.22590.1.S1_at	B	B1A	POPTR_0008s00540	POPTR_0008s00540 (8:393)	NA	NA	NA	NA	AT1G51080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 101 Blast hits to 98 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). 	LOC_Os03g04580.1	expressed protein	Medtr2g122500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225900.1.S1_x_at	B	B2S	POPTR_0018s07630	POPTR_0127s00210 (0:323)//POPTR_0018s07630 (0:131)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.225903.1.S1_x_at	B	B8S	POPTR_0007s00640	POPTR_0013s01720 (5:403)//POPTR_0001s40170 (3:403)//POPTR_0007s00640 (8:403)//POPTR_0015s13960 (6:403)//POPTR_0001s40220 (6:403)//POPTR_0001s31105 (5:402)//POPTR_0002s22610 (4:385)//POPTR_0004s13680 (1:261)	scaffold_6:21288725-21289128(+) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os11g39940.1	"transposon protein, putative, unclassified"	Medtr8g015840.1	"Zinc finger, BED-type predicted "	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.22598.2.A1_a_at	B	B1S	POPTR_0019s11660	POPTR_0019s11660 (7:373)	scaffold_19:12906318-12908784(+) (11)	NA	NA	NA	AT1G71865.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g65094.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22645.1.A1_at	B	B1S	POPTR_0005s22610	POPTR_0005s22610 (5:362)	NA	NA	Q55C58	Vacuolar protein sorting-associated protein 16 homolog	AT2G38020.1	vacuoleless1 (VCL1) 	LOC_Os01g47650.1	"vacuolar protein sorting-associated protein 16, putative, expressed"	Medtr3g061350.1	"Vps16, N-terminal "	GO:0006886|intracellular protein transport	NA	GO:0005737|cytoplasm
PtpAffx.22646.1.S1_at	B	B1S	POPTR_0006s01740	POPTR_0006s01740 (0:10)	NA	NA	NA	NA	AT4G16450.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. "	LOC_Os08g33460.1	expressed protein	Medtr2g030480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2265.7.S1_at	B	B1S	POPTR_0005s27390	POPTR_0005s27390 (8:274)	NA	NA	O49596	High mobility group B protein 2	AT1G20693.3	high mobility group B2 	LOC_Os06g51220.4	"HMG1/2, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.22683.1.A1_at	B	B1S	POPTR_0001s22010	POPTR_0001s22010 (3:239)	NA	NA	Q96JG6	Coiled-coil domain-containing protein 132	AT2G27900.2	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os10g39910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22685.1.A1_at	B	B1S	POPTR_0006s18580	POPTR_0006s18580 (0:459)	NA	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.2	"OsFBX331 - F-box domain containing protein, expressed"	AC233685_52.1	Cyclin-like F-box; F-box protein interaction domain AC233685.2 233595-232417 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.227.1.S1_at	B	B1S	POPTR_0009s07630	POPTR_0009s07630 (0:14)	NA	NA	NA	NA	AT3G14190.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12360.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2271.1.S1_at	B	B1S	POPTR_0018s10490	POPTR_0018s10490 (7:130)	NA	NA	P81370	Thaumatin-like protein	AT4G11650.1	osmotin 34 	LOC_Os03g46070.1	"thaumatin, putative, expressed"	Medtr5g010810.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22726.1.S1_at	B	B1S	POPTR_0015s02220	POPTR_0015s02220 (7:373)	NA	NA	Q9ZUB8	F-box protein SKIP22	AT1G23780.1	F-box family protein 	LOC_Os03g12940.1	"OsFBO13 - F-box and other domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22735.1.A1_at	B	B1S	POPTR_0006s06860	POPTR_0006s06860 (7:286)	NA	NA	Q9NVG8	TBC1 domain family member 13	AT4G13730.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g68010.1	"TBC domain containing protein, expressed"	Medtr8g120430.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.2274.1.S1_at	B	B1S	POPTR_0007s03360	POPTR_0007s03360 (7:275)	scaffold_7:1939688-1942844(+) (11)	NA	NA	NA	AT5G09530.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22743.1.S1_at	B	B1S	POPTR_0002s23310	POPTR_0002s23310 (7:156)	NA	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT2G43080.1	P4H isoform 1 	LOC_Os04g27850.1	"oxidoreductase, putative, expressed"	Medtr1g147170.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.22745.1.S1_at	B	B1S	POPTR_0015s05460	POPTR_0015s05460 (4:87)	scaffold_15:5808840-5809073(+) (10)	NA	NA	NA	AT1G48405.1	Kinase interacting (KIP1-like) family protein 	LOC_Os03g01980.1	"KIP1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22753.1.A1_at	B	B1S	POPTR_0019s05640	POPTR_0019s05640 (7:2475)	NA	NA	Q2TBV1	Replication factor C subunit 3	AT5G27740.1	ATPase family associated with various cellular activities (AAA)  	LOC_Os03g57870.1	"RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed"	Medtr5g020710.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	GO:0005634|nucleus
PtpAffx.22754.1.S1_at	B	B1S	POPTR_0019s05720	POPTR_0019s05720 (7:334)	NA	NA	Q8LFV3	Dof zinc finger protein DOF3.3	AT3G47500.1	cycling DOF factor 3 	LOC_Os01g15900.1	expressed protein	Medtr7g103580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.22761.2.A1_at	B	B1S	POPTR_0018s05420	POPTR_0018s05420 (7:1141)	NA	NA	Q9S7U9	Mitogen-activated protein kinase kinase 2	AT4G29810.1	MAP kinase kinase 2 	LOC_Os06g05520.1	"OsMKK1 - putative MAPKK based on amino acid sequence homology, expressed"	Medtr6g005140.1	Tyrosine protein kinase; Nuclear transport factor 2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.22769.1.A1_at	B	B1S	POPTR_0002s09270	POPTR_0002s09270 (8:1608)	NA	NA	Q9LX20	Aspartic proteinase-like protein 1	AT5G10080.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g51540.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr3g101120.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22801.1.S1_at	B	B1S	POPTR_0018s00620	POPTR_0018s00620 (8:175)	NA	NA	Q5SRX1	TOM1-like protein 2	AT4G32760.1	ENTH/VHS/GAT family protein 	LOC_Os02g17350.2	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.22805.2.A1_at	B	B1S	POPTR_0011s17270	POPTR_0011s17270 (8:192)	NA	NA	Q8W206	COP9 signalosome complex subunit 6a	AT5G56280.1	COP9 signalosome subunit 6A 	LOC_Os08g39070.1	"COP9 signalosome complex subunit 6a, putative, expressed"	Medtr5g089320.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22817.1.S1_at	B	B1S	POPTR_0004s06030	POPTR_0004s06030 (7:1468)	NA	NA	P09122	DNA polymerase III subunit gamma/tau	AT4G18820.1	AAA-type ATPase family protein 	LOC_Os05g45340.1	"ATP binding protein, putative, expressed"	Medtr2g021690.1	"AAA ATPase; DNA polymerase III clamp loader subunit, C-terminal "	NA	GO:0005524|ATP binding	NA
PtpAffx.22824.1.S1_at	B	B1S	POPTR_0004s04200	POPTR_0004s04200 (8:640)	NA	NA	P73625	MutS2 protein	AT1G65070.2	"DNA mismatch repair protein MutS, type 2 "	LOC_Os04g58410.1	"smr domain containing protein, expressed"	AC233659_24.1	MutS 2 protein AC233659.1 104034-100163 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22839.1.S1_at	B	B1S	POPTR_0004s15260	POPTR_0004s15260 (7:1811)	NA	NA	Q08747	Upstream activation factor subunit UAF30	AT3G19080.1	SWIB complex BAF60b domain-containing protein 	LOC_Os03g55570.1	"upstream activation factor subunit spp27, putative, expressed"	Medtr5g017990.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22842.1.S1_a_at	B	B1S	POPTR_0018s14330	POPTR_0018s14330 (6:636)	NA	NA	Q9K9K5	Arginine decarboxylase	NA	NA	LOC_Os03g63074.3	"Ser/Thr protein phosphatase family protein, expressed"	Medtr4g092740.1	Lysine decarboxylase; 	NA	GO:0003824|catalytic activity	NA
PtpAffx.22845.1.S1_at	B	B1S	POPTR_0056s00240	POPTR_0056s00240 (3:340)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22854.1.S1_at	B	B5S	POPTR_0001s42500	POPTR_0001s42500 (1:416)//POPTR_0001s42510 (0:203)//POPTR_0001s43800 (0:83)//POPTR_0001s42470 (0:81)//POPTR_0049s00260 (0:55)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22855.1.A1_at	B	B1S	POPTR_0017s03000	POPTR_0017s03000 (3:219)	NA	NA	Q6NLC8	Uncharacterized protein At1g66480	AT1G66480.1	plastid movement impaired 2 	LOC_Os08g33210.1	expressed protein	Medtr5g087100.1	"Uncharacterized protein At1g66480, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22859.1.S1_at	B	B1S	POPTR_0014s09890	POPTR_0014s09890 (0:402)	scaffold_14:7413632-7416849(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22909.1.A1_at	B	B1S	POPTR_0019s09300	POPTR_0019s09300 (7:564)	NA	NA	Q8RVH5	Basic 7S globulin 2	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22923.1.A1_at	B	B1S	POPTR_0008s18070	POPTR_0008s18070 (0:388)	NA	NA	Q9FI40	BAHD acyltransferase At5g47980	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g10420.1	"transferase family domain containing protein, expressed"	Medtr5g092230.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.22957.1.A1_at	B	B1S	POPTR_0019s01520	POPTR_0019s01520 (5:173)	NA	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g43040.2	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.22995.1.A1_at	B	B1S	POPTR_0011s15120	POPTR_0011s15120 (7:269)	NA	NA	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.23051.1.S1_at	B	B3S	POPTR_0005s14050	POPTR_0005s14030 (6:403)//POPTR_0005s14040 (1:403)//POPTR_0005s14050 (7:337)	NA	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23620.1	methyl esterase 1 	LOC_Os01g57770.1	"OsPOP4 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g018420.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2332.3.A1_at	B	B1S	POPTR_0005s25130	POPTR_0005s25130 (6:431)	NA	NA	P55233	"Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic"	AT1G27680.1	ADPGLC-PPase large subunit 	LOC_Os05g50380.2	"glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed"	Medtr4g095980.1	Protein kinase; ADP-glucose pyrophosphorylase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.2333.1.S1_at	B	B1S	POPTR_0008s19760	POPTR_0008s19760 (7:417)	scaffold_8:13631215-13631724(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g160230.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23352.1.S1_at	B	B1S	POPTR_0001s37220	POPTR_0001s37220 (5:178)	scaffold_1:36181154-36181691(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2344.1.S1_at	B	B1S	POPTR_0008s02100	POPTR_0008s02100 (8:564)	NA	NA	P27788	"Ferredoxin-3, chloroplastic"	AT2G27510.1	ferredoxin 3 	LOC_Os03g61960.2	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr2g107770.1	"Ferredoxin [2Fe-2S], plant "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.23509.1.S1_at	B	B1S	POPTR_0011s12640	POPTR_0011s12640 (1:26)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23509.2.S1_at	B	B1S	POPTR_0011s12640	POPTR_0011s12640 (0:1442)	scaffold_11:15328925-15329236(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23542.1.S1_at	B	B2S	POPTR_0014s17770	POPTR_0014s17770 (4:1351)//POPTR_0014s17760 (3:453)	scaffold_14:14104904-14111235(+) (10)	NA	NA	NA	AT3G60150.1	Protein of unknown function (DUF498/DUF598) 	LOC_Os10g42090.1	"AGAP003819-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23593.1.S1_at	B	B1S	POPTR_0016s02190	POPTR_0016s02190 (8:744)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23593.2.A1_at	B	B1S	POPTR_0098s00300	POPTR_0098s00300 (6:132)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23625.1.A1_s_at	B	B1S	POPTR_0008s09980	POPTR_0008s09980 (6:2311)	NA	NA	NA	NA	AT3G17300.1	unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g37850.1	expressed protein	Medtr2g037030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23625.3.A1_a_at	B	B1S	POPTR_0010s16190	POPTR_0010s16190 (6:1162)	scaffold_10:15185970-15187622(+) (11)	NA	NA	NA	AT3G17300.1	unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g37850.1	expressed protein	Medtr2g037030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23654.1.S1_at	B	B1S	POPTR_0007s09220	POPTR_0007s09220 (8:507)	NA	NA	Q5Z8P0	Probable protein phosphatase 2C 60	AT3G51370.1	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr8g089160.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.23705.1.A1_at	B	B1S	POPTR_0018s14340	POPTR_0018s14340 (7:209)	NA	NA	NA	NA	AT5G35330.3	methyl-CPG-binding domain protein 02 	LOC_Os09g32090.1	"methyl-binding domain protein MBD, putative, expressed"	Medtr1g111540.1	"Thymidine kinase; Methyl-CpG binding; Zinc finger, CW-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.23708.1.S1_at	B	B1S	POPTR_0019s10130	POPTR_0019s10130 (7:192)	NA	NA	Q32PX7	Far upstream element-binding protein 1	AT4G10070.1	KH domain-containing protein 	LOC_Os08g01930.1	"KH domain-containing protein, putative, expressed"	Medtr5g008480.2	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.23776.1.A1_at	B	B1S	POPTR_0008s17770	POPTR_0008s17770 (7:557)	NA	NA	Q941R4	GDP-mannose transporter	AT1G76340.1	golgi nucleotide sugar transporter 3 	LOC_Os03g11590.1	"integral membrane protein, putative, expressed"	Medtr1g126830.1	"Integral membrane protein, putative "	NA	NA	GO:0016020|membrane
PtpAffx.2380.2.S1_a_at	B	B2S	POPTR_0018s02250	POPTR_0018s02250 (6:1382)//POPTR_0006s27650 (4:1184)	NA	NA	P46248	"Aspartate aminotransferase, chloroplastic"	AT4G31990.2	aspartate aminotransferase 5 	LOC_Os02g55420.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.2383.4.A1_at	B	B1S	POPTR_0001s27130	POPTR_0001s27130 (8:718)	NA	NA	Q84TI3	Protein OBERON 4	AT3G63500.2	Protein of unknown function (DUF1423) 	LOC_Os03g11890.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr4g049790.1	Arabidopsis thaliana 130.7kDa hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2385.2.A1_at	B	B1S	POPTR_0006s28720	POPTR_0006s28720 (0:490)	NA	NA	Q16629	Serine/arginine-rich splicing factor 7	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.7	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.2385.3.A1_at	B	B1S	POPTR_0006s28720	POPTR_0006s28720 (8:276)	NA	NA	Q16629	Serine/arginine-rich splicing factor 7	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.7	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.23856.2.S1_at	B	B1S	POPTR_0001s40930	POPTR_0001s40930 (6:147)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2386.3.S1_at	B	B1S	POPTR_0011s00400	POPTR_0011s00400 (8:161)	NA	NA	O50001	Major allergen Pru ar 1	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.24005.1.A1_at	B	B1S	POPTR_0009s12750	POPTR_0009s12750 (1:589)	NA	NA	NA	NA	AT4G34700.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os06g50000.1	"LYR motif containing protein, putative, expressed"	Medtr3g163080.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24010.2.S1_at	B	B1S	POPTR_0007s12010	POPTR_0007s12010 (6:248)	NA	NA	NA	NA	AT2G23670.1	homolog of Synechocystis YCF37 	NA	NA	Medtr5g018610.1	"YCF37 {Arabidop, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24019.1.A1_at	B	B1S	POPTR_0015s12840	POPTR_0015s12840 (1:38)	scaffold_15:13044183-13044787(+) (10)	NA	Q42538	Serine acetyltransferase 5	AT5G56760.1	serine acetyltransferase 1;1 	LOC_Os05g45710.1	"serine acetyltransferase protein, putative, expressed"	Medtr4g125940.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
PtpAffx.24034.1.S1_at	B	B1S	POPTR_0003s05720	POPTR_0003s05720 (6:568)	NA	NA	Q944I4	"D-glycerate 3-kinase, chloroplastic"	AT1G80380.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g48990.1	"uncharacterized kinase mug58, putative, expressed"	Medtr2g123430.2	"Uncharacterized kinase mug58, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2406.1.A1_at	B	B1S	POPTR_0016s04190	POPTR_0016s04190 (3:398)	NA	NA	Q9SR79	Probable inactive purple acid phosphatase 16	AT3G10150.1	purple acid phosphatase 16 	LOC_Os01g71420.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.2408.1.S1_at	B	B1S	POPTR_0009s12590	POPTR_0009s12590 (8:270)	NA	NA	P53800	Squalene synthase	AT4G34640.1	squalene synthase 1 	LOC_Os03g59040.2	"squalene synthetase, putative, expressed"	Medtr4g097000.1	Terpenoid synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.2409.1.S1_at	B	B1S	POPTR_0008s13270	POPTR_0008s13270 (3:463)	NA	NA	Q9W1X7	Mediator of RNA polymerase II transcription subunit 23	AT1G23230.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). 	LOC_Os02g49992.1	expressed protein	AC233676_14.1	hypothetical protein AC233676.2 65637-60727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24096.1.A1_at	B	B1S	POPTR_0004s21380	POPTR_0004s21380 (0:529)	NA	NA	NA	NA	AT5G22460.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g05600.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24103.2.A1_at	B	B1S	POPTR_0012s02640	POPTR_0012s02640 (5:202)	scaffold_12:2158717-2159135(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24171.1.A1_at	B	B1S	POPTR_0008s20620	POPTR_0008s20620 (2:684)	scaffold_8:14381379-14385582(-) (11)	NA	P0C8Q9	Uncharacterized protein At5g19025	AT3G06180.1	Ribosomal protein L34e superfamily protein 	LOC_Os05g32670.1	"pentatricopeptide repeat-containing protein, putative, expressed"	Medtr2g026810.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24176.1.A1_at	B	B1S	POPTR_0009s16420	POPTR_0009s16420 (6:759)	scaffold_9:12477964-12478790(+) (10)	NA	Q9XGI9	N-carbamoylputrescine amidase	AT2G27450.2	nitrilase-like protein 1 	LOC_Os02g33080.1	"N-carbamoylputrescine amidase, putative, expressed"	Medtr2g107680.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24236.1.A1_at	B	B1S	POPTR_0003s12910	POPTR_0003s12910 (0:380)	NA	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G63700.1	Protein kinase superfamily protein 	LOC_Os02g44642.1	"STE_MEKK_ste11_MAP3K.10 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g126720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.24241.1.A1_at	B	B1S	POPTR_0004s06981	POPTR_0004s06981 (2:316)	NA	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24307.1.A1_at	B	B1S	POPTR_0012s14800	POPTR_0012s14800 (4:700)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24312.1.S1_a_at	B	B1S	POPTR_0006s28050	POPTR_0006s28050 (8:1160)	NA	NA	Q3KPR1	Nuclear nucleic acid-binding protein C1D	AT5G25080.1	Sas10/Utp3/C1D family 	LOC_Os08g16880.1	"sas10/Utp3 family protein, expressed"	Medtr3g138420.1	Exosome-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24335.1.A1_at	B	B1S	POPTR_0012s14200	POPTR_0012s14200 (8:209)	NA	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24353.2.A1_x_at	B	B1S	POPTR_0005s21240	POPTR_0005s21240 (6:547)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2438.2.A1_at	B	B1S	POPTR_0011s04990	POPTR_0011s04990 (1:127)	NA	NA	Q9ZR39	Splicing factor U2af large subunit A	AT1G60900.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g41820.1	"RNA recognition motif containing protein, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.24380.1.A1_at	B	B1S	POPTR_0007s09780	POPTR_0007s09780 (6:299)	scaffold_7:9295457-9295948(-) (10)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT5G67500.1	voltage dependent anion channel 2 	LOC_Os03g10510.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.2439.1.S1_at	B	B1S	POPTR_0003s15320	POPTR_0003s15320 (7:986)	scaffold_3:15140421-15143554(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.24406.3.A1_at	B	B1S	POPTR_0006s07750	POPTR_0006s07750 (4:2703)	NA	NA	P93395	Proteasome subunit beta type-6	AT4G31300.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os02g53060.1	"peptidase, T1 family, putative, expressed"	Medtr3g132980.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.24432.1.A1_at	B	B1S	POPTR_0016s06670	POPTR_0016s06670 (1:163)	NA	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.3	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24440.2.A1_at	B	B1S	POPTR_0011s10540	POPTR_0011s10540 (8:802)	NA	NA	Q9ZTN2	ER lumen protein retaining receptor	AT3G25040.1	endoplasmic reticulum retention defective 2B 	LOC_Os04g30800.2	"ER lumen protein retaining receptor, putative, expressed"	Medtr4g135750.1	ER lumen protein retaining receptor 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
PtpAffx.24447.1.A1_at	B	B1S	POPTR_0002s24920	POPTR_0002s24920 (8:1257)	NA	NA	Q06915	"Probable glucan endo-1,3-beta-glucosidase A6"	AT3G07320.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os09g32550.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g012760.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.24503.1.S1_at	B	B1S	POPTR_0010s00730	POPTR_0010s00730 (4:79)	NA	NA	Q8GUG7	DEAD-box ATP-dependent RNA helicase 50	AT3G06980.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g01830.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g163690.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.24511.1.A1_at	B	B1S	POPTR_0001s44270	POPTR_0001s44270 (8:563)	scaffold_1:44709756-44710403(-) (10)	NA	Q8CCN5	Breast carcinoma-amplified sequence 3 homolog	AT5G54730.1	homolog of yeast autophagy 18 (ATG18) F 	LOC_Os01g57720.2	expressed protein	Medtr2g096860.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24520.1.A1_at	B	B2S	POPTR_0017s03230	POPTR_0017s03240 (0:248)//POPTR_0017s03230 (0:248)	scaffold_17:2265763-2267017(+) (11)//scaffold_17:2266203-2277569(+) (11)//scaffold_17:2294367-2296093(+) (11)//scaffold_17:2294824-2304056(+) (11)//scaffold_17:2295272-2315477(+) (11)//scaffold_17:2295710-2326578(+) (10)//scaffold_17:2302780-2340030(+) (10)//scaffold_17:2303236-2341833(+) (10)//scaffold_17:2303674-2353473(+) (10)//scaffold_17:2304766-2354732(+) (10)//scaffold_17:2314202-2364667(+) (10)//scaffold_17:2314659-2365125(+) (9)//scaffold_8:16153065-16154503(-) (11)//scaffold_8:16153965-16165665(-) (10)//scaffold_8:16194436-16209162(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24555.1.A1_at	B	B1S	POPTR_0015s15880	POPTR_0015s15880 (6:647)	scaffold_10:3809023-3809550(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24590.1.S1_at	B	B1S	POPTR_0006s26150	POPTR_0006s26150 (5:359)	scaffold_6:24428697-24432615(-) (10)	NA	NA	NA	AT5G25570.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g08820.1	expressed protein	Medtr3g135860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24591.2.S1_at	B	B1A	POPTR_0015s00900	POPTR_0015s00900 (8:436)	scaffold_15:515316-515846(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24598.1.S1_at	B	B1S	POPTR_0010s15690	POPTR_0010s15690 (8:1193)	scaffold_10:14826657-14827854(-) (9)	NA	NA	NA	AT5G49010.1	DNA replication protein-related 	LOC_Os05g05150.1	"SLD5 - Putative GINS complex subunit, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24608.1.A1_at	B	B1S	POPTR_0002s09480	POPTR_0002s09480 (0:164)	NA	NA	Q8H1E4	Ethylene-responsive transcription factor RAP2-4	AT1G78080.1	related to AP2 4 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	CU651566_18.1	Pathogenesis-related transcriptional factor and ERF CU651566.9 95071-96871 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.24629.1.A1_at	B	B1S	POPTR_0008s06550	POPTR_0008s06550 (2:236)	NA	NA	O24412	Probable 26S proteasome non-ATPase regulatory subunit 7	AT5G05780.1	RP non-ATPase subunit 8A 	LOC_Os04g56646.1	"MEE34, putative, expressed"	Medtr5g089320.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2465.1.S1_at	B	B1S	POPTR_0017s12630	POPTR_0017s12630 (6:911)	NA	NA	Q8YM56	Chaperone protein ClpB 2	AT5G15450.1	casein lytic proteinase B3 	LOC_Os03g31300.1	"chaperone protein clpB 1, putative, expressed"	Medtr6g014150.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.24667.1.A1_at	B	B1S	POPTR_0001s01270	POPTR_0001s01270 (0:403)	NA	NA	Q12955	Ankyrin-3	AT4G19150.1	Ankyrin repeat family protein 	LOC_Os10g43040.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	Medtr5g026960.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24682.1.A1_at	B	B1S	POPTR_0015s08020	POPTR_0015s08020 (2:360)	NA	NA	Q869R9	Myb-like protein J	AT1G19000.2	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr5g038100.1	"Zinc finger, CCHC-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2472.3.S1_at	B	B1S	POPTR_0002s04790	POPTR_0002s04790 (6:151)	NA	NA	P23525	"37 kDa inner envelope membrane protein, chloroplastic"	AT3G63410.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g08200.1	"methyltransferase domain containing protein, putative, expressed"	Medtr1g083540.1	"37 kDa inner envelope membrane protein, chloroplast precursor, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.24775.1.A1_at	B	B1S	POPTR_0001s24760	POPTR_0001s24760 (8:68)	NA	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24779.1.A1_at	B	B1S	POPTR_0011s07060	POPTR_0011s07060 (6:337)	scaffold_11:7821757-7822254(-) (10)	NA	Q9SN39	"Pentatricopeptide repeat-containing protein At4g18750, chloroplastic"	AT4G18750.1	Pentatricopeptide repeat (PPR) superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24819.1.A1_at	B	B1S	POPTR_0032s00230	POPTR_0032s00230 (8:437)	scaffold_32:168709-169211(-) (11)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT1G52080.1	actin binding protein family 	LOC_Os05g09380.3	"AR791, putative, expressed"	Medtr2g121920.1	AR791; actin binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24853.1.A1_at	B	B1S	POPTR_0014s01030	POPTR_0014s01030 (5:330)	NA	NA	Q94JY4	Protein BRICK 1	AT2G22640.1	"BRICK1, putative "	LOC_Os02g58320.1	"BRICK1, putative, expressed"	Medtr5g032410.1	"Protein BRICK1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24863.2.A1_at	B	B1S	POPTR_0006s29330	POPTR_0006s29330 (7:361)	scaffold_6:26732054-26732594(-) (11)	NA	Q4KMJ1	Cation transport regulator-like protein 2	AT4G31290.1	ChaC-like family protein 	LOC_Os02g26700.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr3g132970.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2489.4.A1_at	B	B1A	POPTR_0003s07790	POPTR_0003s07790 (5:318)	NA	NA	Q20390	Palmitoyl-protein thioesterase 1	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g01150.1	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008474|palmitoyl-(protein) hydrolase activity	NA
PtpAffx.24890.1.A1_at	B	B1A	POPTR_0006s16290	POPTR_0006s16290 (7:87)	scaffold_6:14215723-14215917(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.102.A1_x_at	B	B1A	POPTR_0018s12270	POPTR_0018s12270 (6:416)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.104.S1_at	B	B2S	POPTR_0006s18230	POPTR_0006s18230 (0:250)//POPTR_0006s18240 (0:250)	NA	NA	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.249.104.S1_x_at	B	B2S	POPTR_0006s18230	POPTR_0006s18230 (3:586)//POPTR_0006s18240 (3:586)	NA	NA	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.249.11.A1_at	B	B2A	POPTR_0002s19000	POPTR_0274s00200 (7:400)//POPTR_0002s19000 (7:400)	NA	NA	A9P822	S-adenosylmethionine synthase 1	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.249.116.A1_a_at	B	B2S	POPTR_0001s05270	POPTR_0001s05270 (8:169)//POPTR_0003s22010 (8:168)	NA	NA	NA	NA	AT3G57930.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g48600.1	expressed protein	Medtr2g118100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.12.S1_a_at	B	B2A	POPTR_0010s01150	POPTR_0010s01150 (5:62)//POPTR_0010s01180 (5:62)	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.249.122.S1_at	B	B1S	POPTR_0008s09150	POPTR_0008s09150 (5:155)	NA	NA	Q9SC12	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
PtpAffx.249.14.A1_x_at	B	B2S	POPTR_0010s01170	POPTR_0010s01170 (7:58)//POPTR_2074s00200 (7:58)	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.249.158.S1_a_at	B	B1S	POPTR_0003s15500	POPTR_0003s15500 (7:460)	scaffold_3:15246726-15251514(-) (11)	NA	NA	NA	AT4G20150.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g31490.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.173.S1_at	B	B2S	POPTR_0002s03590	POPTR_0002s03590 (7:562)//POPTR_2015s00200 (4:559)	NA	NA	NA	NA	AT1G19530.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g61150.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.192.S1_at	B	B1S	POPTR_0006s15420	POPTR_0006s15420 (8:428)	NA	NA	Q9XG80	Probable phospholipase A2 homolog 1	AT2G19690.1	phospholipase A2-beta 	LOC_Os02g58500.1	"phospholipase A2, putative, expressed"	Medtr6g093370.1	Phospholipase A2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.203.S1_at	B	B1S	POPTR_0001s15290	POPTR_0001s15290 (0:246)	NA	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.222.S1_at	B	B1S	POPTR_0001s12960	POPTR_0001s12960 (8:142)	NA	NA	P51132	"Cytochrome b-c1 complex subunit Rieske-2, mitochondrial"	AT5G13430.1	Ubiquinol-cytochrome C reductase iron-sulfur subunit 	LOC_Os02g32120.1	"cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed"	Medtr7g097200.1	Ubiquinol cytochrome reductase transmembrane region; Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0008121|ubiquinol-cytochrome-c reductase activity||GO:0009055|electron carrier activity||GO:0051537|""2 iron, 2 sulfur cluster binding"""	NA
PtpAffx.249.233.A1_at	B	B1A	POPTR_1320s00200	POPTR_1320s00200 (2:103)	scaffold_1320:3822-4252(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.234.S1_at	B	B1S	POPTR_0014s17990	POPTR_0014s17990 (2:626)	scaffold_1430:4025-4444(-) (9)	NA	NA	NA	AT4G36660.1	Protein of unknown function (DUF1195) 	LOC_Os07g41660.1	expressed protein	Medtr5g019780.1	Protein of unknown function DUF1195 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.268.A1_at	B	B1A	POPTR_0011s06480	POPTR_0011s06480 (1:27)	scaffold_11:6928627-6929054(-) (11)//scaffold_13:14317028-14317455(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.295.A1_at	B	B1S	POPTR_0009s06690	POPTR_0009s06690 (6:199)	NA	NA	O22342	"ADP,ATP carrier protein 1, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.3.S1_x_at	B	B1S	POPTR_0011s11960	POPTR_0011s11960 (8:962)	NA	NA	Q96386	Metallothionein-like protein type 3	AT3G15353.1	metallothionein 3 	LOC_Os05g11320.1	"metallothionein-like protein 3B, putative, expressed"	Medtr8g070820.1	"Plant metallothionein, family 15 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.303.S1_a_at	B	B1S	POPTR_0002s13970	POPTR_0002s13970 (6:78)	NA	NA	P39207	Nucleoside diphosphate kinase 1	AT4G09320.1	Nucleoside diphosphate kinase family protein 	LOC_Os10g41410.2	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.334.S1_at	B	B2S	POPTR_0016s07730	POPTR_0016s07730 (2:150)//POPTR_0016s07770 (2:150)	NA	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
PtpAffx.249.340.S1_at	B	B1S	POPTR_0016s12030	POPTR_0016s12030 (7:391)	NA	NA	P49972	Signal recognition particle 54 kDa protein 2	AT1G48900.1	"Signal recognition particle, SRP54 subunit protein "	LOC_Os01g56600.1	"signal recognition particle 54 kDa protein, putative, expressed"	Medtr2g126740.1	"GTP-binding signal recognition particle SRP54, G-domain "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0005515|protein binding||GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
PtpAffx.249.360.A1_at	B	B1A	POPTR_0019s00770	POPTR_0019s00770 (5:501)	NA	NA	Q40901	Defensin-like protein	AT2G02130.1	low-molecular-weight cysteine-rich 68 	LOC_Os03g03810.1	"DEF8 - Defensin and Defensin-like DEFL family, expressed"	Medtr8g090060.1	Knottin 	GO:0006952|defense response	NA	NA
PtpAffx.249.370.A1_at	B	B1S	POPTR_0011s09530	POPTR_0011s09530 (0:3)	scaffold_11:11830799-11830885(-) (11)	NA	Q9M4Y3	"30S ribosomal protein S10, chloroplastic"	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.249.390.S1_at	B	B1S	POPTR_0002s10350	POPTR_0002s10350 (8:434)	scaffold_2:7446089-7446549(-) (9)	NA	Q9FGB0	Transcription factor bHLH145	AT5G50010.1	sequence-specific DNA binding transcription factors;transcription regulators 	LOC_Os03g27390.2	"CPuORF35 - conserved peptide uORF-containing transcript, expressed"	Medtr5g074750.1	"transcription factor/ transcription regulator, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.4.A1_at	B	B1S	POPTR_0003s06930	POPTR_0003s06930 (0:203)	NA	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.249.4.A1_x_at	B	B1S	POPTR_0003s06930	POPTR_0003s06930 (0:203)	NA	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.249.423.A1_at	B	B1S	POPTR_0009s12390	POPTR_0009s12390 (7:1092)	scaffold_9:10123977-10125213(-) (11)	NA	Q6DKP5	WD repeat-containing protein 13	AT2G16405.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g56860.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086290.1	"WD repeat-containing protein 5, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.443.A1_at	B	B2S	POPTR_0019s01950	POPTR_0019s01950 (7:162)//POPTR_0019s02700 (2:140)	NA	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.249.445.A1_at	B	B1S	POPTR_0073s00200	POPTR_0073s00200 (4:998)	NA	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53430.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.249.485.S1_at	B	B1S	POPTR_0008s05470	POPTR_0008s05470 (7:539)	NA	NA	P09189	Heat shock cognate 70 kDa protein	AT5G02500.1	heat shock cognate protein 70-1 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.5.S1_at	B	B1S	POPTR_0010s16240	POPTR_0010s16240 (0:84)	NA	NA	O48649	ADP-ribosylation factor 1	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.249.508.S1_at	B	B1S	POPTR_0005s08050	POPTR_0005s08050 (4:120)	NA	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
PtpAffx.249.520.S1_at	B	B1S	POPTR_0011s11960	POPTR_0011s11960 (0:622)	NA	NA	Q96386	Metallothionein-like protein type 3	AT3G15353.1	metallothionein 3 	LOC_Os05g11320.1	"metallothionein-like protein 3B, putative, expressed"	Medtr8g070820.1	"Plant metallothionein, family 15 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.567.S1_s_at	B	B1S	POPTR_0001s23820	POPTR_0001s23820 (0:11)	scaffold_1:23206449-23206500(-) (11)	NA	NA	NA	AT2G44310.1	Calcium-binding EF-hand family protein 	LOC_Os03g29770.1	"EF hand family protein, expressed"	Medtr7g026040.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.578.S1_at	B	B1S	POPTR_0014s08460	POPTR_0014s08460 (8:229)	NA	NA	Q9LMM6	"Protein BPS1, chloroplastic"	AT2G46080.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.610.S1_at	B	B1A	POPTR_0006s01010	POPTR_0006s01010 (0:7)	scaffold_6:574284-574323(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.613.A1_a_at	B	B1S	POPTR_0001s10140	POPTR_0001s10140 (1:67)	scaffold_1:7839324-7839960(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.659.S1_at	B	B2S	POPTR_0013s05890	POPTR_0013s05890 (0:188)//POPTR_0013s05900 (0:184)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
PtpAffx.249.674.A1_at	B	B1S	POPTR_0002s10130	POPTR_0002s10130 (0:258)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.681.A1_at	B	B1S	POPTR_0008s03950	POPTR_0008s03950 (0:371)	NA	NA	P43286	Aquaporin PIP2-1	AT3G53420.2	plasma membrane intrinsic protein 2A 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.249.70.A1_at	B	B1S	POPTR_0391s00200	POPTR_0391s00200 (2:879)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.79.A1_at	B	B1S	POPTR_0009s12420	POPTR_0009s12420 (1:72)	NA	NA	P43296	Cysteine proteinase RD19a	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.249.792.A1_at	B	B1S	POPTR_0013s04860	POPTR_0013s04860 (0:10)	scaffold_13:3382479-3382792(-) (10)	NA	Q2QXJ4	Germin-like protein 12-1	AT5G39100.1	germin-like protein 6 	LOC_Os12g05840.1	"Cupin domain containing protein, expressed"	Medtr1g093090.1	Germin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.825.A1_at	B	B1S	POPTR_0003s02040	POPTR_0003s02040 (5:355)	NA	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.830.A1_at	B	B1S	POPTR_0017s03345	POPTR_0017s03345 (1:555)	scaffold_14:13794788-13795451(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.861.A1_at	B	B1S	POPTR_0013s01640	POPTR_0013s01640 (7:58)	NA	NA	NA	NA	AT1G56220.3	Dormancy/auxin associated family protein 	LOC_Os03g22270.3	"auxin-repressed protein, putative, expressed"	Medtr1g099940.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.887.S1_at	B	B1S	POPTR_0003s02040	POPTR_0003s02040 (5:116)	NA	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.890.S1_at	B	B1S	POPTR_0017s14090	POPTR_0017s14090 (0:508)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24919.1.A1_s_at	B	B1S	POPTR_0007s14010	POPTR_0007s14010 (8:71)	scaffold_7:13956053-13959058(-) (11)	NA	Q94G00	Peptidyl-prolyl cis-trans isomerase Pin1	AT2G18040.1	"peptidylprolyl cis/trans isomerase, NIMA-interacting 1 "	LOC_Os04g56800.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g090170.1	PpiC-type peptidyl-prolyl cis-trans isomerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24948.1.A1_at	B	B1S	POPTR_0010s13350	POPTR_0010s13350 (4:236)	scaffold_10:13191920-13192277(+) (11)	NA	NA	NA	AT1G68440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr5g067220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24997.1.S1_at	B	B1S	POPTR_0008s19350	POPTR_0008s19350 (7:396)	NA	NA	Q949Z1	Polygalacturonase At1g48100	AT1G60590.1	Pectin lyase-like superfamily protein 	LOC_Os01g44970.1	"polygalacturonase, putative, expressed"	Medtr5g035390.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.2500.1.S1_at	B	B1S	POPTR_0015s15360	POPTR_0015s15360 (6:308)	NA	NA	P0C8Q3	Pentatricopeptide repeat-containing protein At4g19895	AT4G19890.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os11g39360.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	AC233656_8.1	"Glycoside hydrolase, family 63 AC233656.1 29981-26418 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25021.2.S1_s_at	B	B1S	POPTR_0008s07780	POPTR_0008s07780 (7:1109)	scaffold_8:4777918-4779175(+) (11)	NA	P62313	U6 snRNA-associated Sm-like protein LSm6	AT2G43810.2	Small nuclear ribonucleoprotein family protein 	LOC_Os02g30624.2	"LSM domain containing protein, expressed"	Medtr4g110140.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25056.1.A1_at	B	B1S	POPTR_0017s01870	POPTR_0017s01870 (3:268)	scaffold_17:1372567-1372995(-) (10)	NA	Q9FGV1	Auxin response factor 8	AT5G37020.1	auxin response factor 8 	LOC_Os04g57610.1	"auxin response factor, putative, expressed"	Medtr5g084140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.25094.1.A1_at	B	B1S	POPTR_0001s11520	POPTR_0001s11520 (4:325)	NA	NA	NA	NA	AT1G31335.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g105990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.251.1.A1_at	B	B1S	POPTR_0014s15330	POPTR_0014s15330 (0:95)	NA	NA	Q7DFU6	Putative uncharacterized protein yghX	AT2G32520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g34700.1	"dienelactone hydrolase family protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.25123.1.A1_at	B	B1S	POPTR_0011s15520	POPTR_0011s15520 (0:101)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25125.1.A1_at	B	B1A	POPTR_0016s05040	POPTR_0016s05040 (5:163)	NA	NA	O81973	Cytochrome P450 93A3	AT5G06900.1	"cytochrome P450, family 93, subfamily D, polypeptide 1 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr7g111290.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25142.3.A1_at	B	B1S	POPTR_0010s20920	POPTR_0010s20920 (0:198)	NA	NA	Q02790	Peptidyl-prolyl cis-trans isomerase FKBP4	AT3G55520.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os05g38370.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g087660.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.25143.1.A1_at	B	B1S	POPTR_0007s04920	POPTR_0007s04920 (0:86)	NA	NA	Q39017	Diacylglycerol kinase 1	AT5G63770.1	diacylglycerol kinase 2 	LOC_Os12g12260.1	"diacylglycerol kinase 1, putative, expressed"	Medtr4g144130.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region; Protein kinase C, phorbol ester/diacylglycerol binding "	GO:0023033|signaling pathway||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.25151.1.A1_at	B	B1S	POPTR_0007s02340	POPTR_0007s02340 (8:293)	NA	NA	NA	NA	AT2G43250.1	unknown protein; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g41330.1	expressed protein	Medtr4g104210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25160.1.A1_at	B	B1S	POPTR_0021s00720	POPTR_0021s00720 (5:122)	scaffold_21:385300-385496(-) (11)	NA	Q9SAA6	"Pentatricopeptide repeat-containing protein At1g11710, mitochondrial"	AT1G11710.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g05920.1	"Rf1, mitochondrial precursor, putative, expressed"	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2517.1.A1_at	B	B1S	POPTR_0015s04290	POPTR_0015s04290 (5:153)	NA	NA	P90587	66 kDa stress protein	AT3G18060.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g03510.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g155430.1	"66 kDa stress protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25192.1.A1_at	B	B1S	POPTR_0019s07560	POPTR_0019s07560 (3:183)	scaffold_19:8619512-8621215(-) (11)//scaffold_911:2098-2619(+) (9)	NA	NA	NA	AT5G05330.1	HMG-box (high mobility group) DNA-binding family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25242.1.A1_at	B	B1S	POPTR_0019s13590	POPTR_0019s13590 (1:2421)	NA	NA	NA	NA	AT2G20820.1	unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g38520.1	expressed protein	AC229695_7.1	hypothetical protein AC229695.5 30108-33175 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25377.1.S1_at	B	B1S	POPTR_0012s05780	POPTR_0012s05780 (1:2019)	NA	NA	Q3U1Y4	DENN domain-containing protein 4B	AT1G49040.1	stomatal cytokinesis defective / SCD1 protein (SCD1) 	LOC_Os01g39380.1	"SCD1, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25435.1.A1_x_at	B	B1S	POPTR_0013s14220	POPTR_0013s14220 (3:773)	scaffold_13:14509164-14511945(-) (11)	NA	NA	NA	AT2G20820.1	unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g38520.1	expressed protein	AC229695_7.1	hypothetical protein AC229695.5 30108-33175 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25439.1.A1_at	B	B1S	POPTR_0007s03610	POPTR_0007s03610 (5:163)	scaffold_7:2073790-2074292(-) (11)	NA	Q8LFY8	RING-H2 finger protein ATL54	AT4G33565.1	RING/U-box superfamily protein 	LOC_Os09g29370.1	"RING-H2 finger protein ATL5F, putative, expressed"	Medtr4g120960.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25444.3.A1_at	B	B1S	POPTR_0005s17480	POPTR_0005s17480 (3:182)	NA	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G65380.1	MATE efflux family protein 	LOC_Os03g08900.1	"MATE efflux family protein, putative, expressed"	Medtr3g150090.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.2545.3.S1_x_at	B	B1S	POPTR_0001s32770	POPTR_0001s32770 (7:380)	NA	NA	Q54EW1	Serine hydroxymethyltransferase 2	AT4G13930.1	serine hydroxymethyltransferase 4 	LOC_Os12g22030.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr3g104830.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.25451.1.S1_at	B	B1S	POPTR_0008s15440	POPTR_0008s15440 (0:798)	NA	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.25548.2.S1_at	B	B2S	POPTR_0003s21620	POPTR_0003s21620 (8:537)//POPTR_0003s21640 (1:493)	NA	NA	Q9LEH3	Peroxidase 15	AT5G06720.1	peroxidase 2 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	Medtr7g112100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.25614.1.S1_at	B	B1S	POPTR_0017s12820	POPTR_0017s12820 (8:409)	scaffold_17:12994492-12994975(-) (11)	NA	Q6KCD5	Nipped-B-like protein	AT5G15540.1	PHD finger family protein 	LOC_Os07g01940.1	"sister chromatid cohesion 2, putative, expressed"	AC231342_23.1	"Zinc finger, FYVE/PHD-type AC231342.3 105368-115322 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25637.2.A1_a_at	B	B1S	POPTR_0005s09540	POPTR_0005s09540 (7:421)	scaffold_5:6648489-6648985(+) (11)	NA	Q9FN42	"ATP-dependent Clp protease proteolytic subunit 2, mitochondrial"	AT5G23140.1	nuclear-encoded CLP protease P7 	LOC_Os04g44400.1	"OsClp7 - Putative Clp protease homologue, expressed"	Medtr4g101010.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.25638.2.S1_at	B	B1S	POPTR_0017s09960	POPTR_0017s09960 (7:1145)	NA	NA	NA	NA	AT4G17310.1	"unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr8g105630.1	"transcription factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25648.1.A1_at	B	B1S	POPTR_0002s20340	POPTR_0002s20340 (3:45)	NA	NA	O24301	Sucrose synthase 2	AT4G02280.1	sucrose synthase 3 	LOC_Os03g22120.1	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.25648.2.A1_at	B	B1S	POPTR_0002s20340	POPTR_0002s20340 (0:207)	NA	NA	O24301	Sucrose synthase 2	AT4G02280.1	sucrose synthase 3 	LOC_Os03g22120.1	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.25650.2.S1_at	B	B1S	POPTR_0009s14090	POPTR_0009s14090 (8:1507)	NA	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16990.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2568.2.S1_at	B	B1S	POPTR_0002s10460	POPTR_0002s10460 (1:135)	NA	NA	Q54PY7	Probable mitochondrial 2-oxoglutarate/malate carrier protein	AT4G24570.1	dicarboxylate carrier 2 	LOC_Os08g37370.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g149100.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25723.1.S1_at	B	B1S	POPTR_0016s06620	POPTR_0016s06620 (8:308)	NA	NA	Q93YS4	ABC transporter G family member 22	AT5G06530.1	ABC-2 type transporter family protein 	LOC_Os03g06139.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.25794.1.S1_at	B	B1S	POPTR_0004s15100	POPTR_0004s15100 (2:55)	scaffold_4:15781695-15782006(+) (11)	NA	Q96MB7	Putative nuclease HARBI1	AT3G19120.1	PIF / Ping-Pong family of plant transposases 	LOC_Os05g51520.1	expressed protein	Medtr4g129210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2581.1.S1_at	B	B1S	POPTR_0018s01250	POPTR_0018s01250 (6:503)	NA	NA	NA	NA	AT4G29250.1	HXXXD-type acyl-transferase family protein 	LOC_Os03g53360.1	"transferase family protein, putative, expressed"	Medtr1g013170.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25831.1.S1_at	B	B1S	POPTR_0009s06560	POPTR_0009s06560 (8:534)	NA	NA	Q941L0	Cellulose synthase A catalytic subunit 3 [UDP-forming]	AT5G05170.1	Cellulose synthase family protein 	LOC_Os07g10770.1	"CESA8 - cellulose synthase, expressed"	Medtr3g029130.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.26012.1.A1_at	B	B1S	POPTR_0004s23400	POPTR_0004s23400 (2:886)	scaffold_1259:420-1447(+) (9)//scaffold_4:22139828-22140854(-) (9)	NA	B1KXB5	Putative Holliday junction resolvase	AT1G12244.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os10g40650.1	"holliday junction resolvase, putative, expressed"	Medtr2g076890.1	Holliday junction resolvase YqgF 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity||GO:0000150|recombinase activity	NA
PtpAffx.26054.1.A1_at	B	B1S	POPTR_0011s05660	POPTR_0011s05660 (6:414)	NA	NA	NA	NA	AT1G28420.1	homeobox-1 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr2g018010.1	DDT; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.26075.2.S1_at	B	B1S	POPTR_0016s12680	POPTR_0016s12680 (4:805)	NA	NA	O80452	AMP deaminase	AT2G38280.2	"AMP deaminase, putative / myoadenylate deaminase, putative "	LOC_Os07g49270.2	"AMP deaminase, putative, expressed"	AC233100_67.1	AMP deaminase AC233100.6 286316-296871 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
PtpAffx.26085.2.S1_at	B	B1S	POPTR_0013s02220	POPTR_0013s02220 (4:423)	NA	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.2	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.26095.1.S1_at	B	B1S	POPTR_0005s25860	POPTR_0005s25860 (5:185)	scaffold_5:24066313-24066643(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26212.1.S1_at	B	B1S	POPTR_0002s09500	POPTR_0002s09500 (2:117)	NA	NA	Q803I2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT1G36050.2	Endoplasmic reticulum vesicle transporter protein 	LOC_Os04g38340.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26214.1.A1_at	B	B1S	POPTR_0004s04570	POPTR_0004s04570 (5:423)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26251.1.S1_at	B	B1S	POPTR_0012s05480	POPTR_0012s05480 (6:450)	NA	NA	NA	NA	AT5G23100.1	"Protein of unknown function, DUF617 "	LOC_Os05g50160.1	"DUF617 domain containing protein, expressed"	Medtr8g115750.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26280.1.A1_at	B	B1S	POPTR_0001s13890	POPTR_0001s13890 (5:147)	NA	NA	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.26302.3.A1_at	B	B1A	POPTR_0001s47270	POPTR_0001s47270 (5:103)	NA	NA	Q6YCH2	TD and POZ domain-containing protein 4	AT1G55760.1	BTB/POZ domain-containing protein 	LOC_Os08g38700.1	"C3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed"	Medtr3g080350.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.26313.1.S1_at	B	B1S	POPTR_0002s23170	POPTR_0002s23170 (6:276)	NA	NA	P11435	Carboxyvinyl-carboxyphosphonate phosphorylmutase	AT2G43180.1	Phosphoenolpyruvate carboxylase family protein 	LOC_Os04g42580.1	"carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed"	Medtr7g005900.1	Isocitrate lyase and phosphorylmutase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26353.1.A1_at	B	B1S	POPTR_0008s05370	POPTR_0008s05370 (6:697)	NA	NA	Q0P4C4	Dephospho-CoA kinase domain-containing protein	AT2G27490.2	dephospho-CoA kinase family 	LOC_Os01g25880.1	"dephospho-CoA kinase, putative, expressed"	Medtr2g017630.1	Dephospho-CoA kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26367.1.S1_at	B	B2S	POPTR_0017s11040	POPTR_0017s11050 (2:1658)//POPTR_0017s11040 (3:552)	NA	NA	NA	NA	AT3G28370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26369.2.S1_s_at	B	B1S	POPTR_0001s27270	POPTR_0001s27270 (8:396)	NA	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2637.1.S1_at	B	B1S	POPTR_0014s15250	POPTR_0014s15250 (4:217)	scaffold_14:11321465-11321948(-) (10)	NA	Q5VR89	Aquaporin SIP1-1	AT5G18290.2	Aquaporin-like superfamily protein 	LOC_Os01g08660.1	"aquaporin protein, putative, expressed"	Medtr4g064600.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26405.1.S1_at	B	B1S	POPTR_0005s21460	POPTR_0005s21460 (8:457)	scaffold_5:20590255-20590950(+) (9)	NA	Q75HX5	Tubby-like F-box protein 8	AT1G76900.2	tubby like protein 1 	LOC_Os05g36190.1	"OsFBT7 - F-box and tubby domain containing protein, expressed"	Medtr1g125200.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26433.1.S1_at	B	B1S	POPTR_0009s11360	POPTR_0009s11360 (7:547)	NA	NA	NA	NA	AT2G16050.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os12g40470.1	"DC1 domain-containing protein, putative, expressed"	Medtr7g026240.1	DC1; C1-like 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.26435.1.A1_at	B	B3S	POPTR_0008s14260	POPTR_0008s14250 (7:174)//POPTR_0008s14260 (8:173)//POPTR_0211s00210 (7:173)	NA	NA	Q8BV79	TPR and ankyrin repeat-containing protein 1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g51090.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr3g169640.1	"Helicase, superfamily 1, UvrD-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26440.2.A1_at	B	B1S	POPTR_0006s23170	POPTR_0006s23170 (8:414)	scaffold_6:22004855-22005377(+) (11)	NA	Q16629	Serine/arginine-rich splicing factor 7	AT3G53500.2	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 	LOC_Os03g17710.2	"splicing factor, arginine/serine-rich, putative, expressed"	AC235022_4.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait AC235022.1 16650-20786 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.26440.2.A1_s_at	B	B1S	POPTR_0006s23170	POPTR_0006s23170 (7:201)	scaffold_6:22005068-22005338(+) (10)	NA	Q16629	Serine/arginine-rich splicing factor 7	AT3G53500.2	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 	LOC_Os03g17710.2	"splicing factor, arginine/serine-rich, putative, expressed"	AC235022_4.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait AC235022.1 16650-20786 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.26469.2.A1_at	B	B1S	POPTR_0011s07420	POPTR_0011s07420 (7:364)	NA	NA	Q08448	Putative lipase YOR059C	AT1G29120.2	Hydrolase-like protein family 	LOC_Os06g06080.1	"serine esterase family protein, putative, expressed"	Medtr4g134610.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26469.4.A1_at	B	B1S	POPTR_0011s07420	POPTR_0011s07420 (2:152)	NA	NA	Q08448	Putative lipase YOR059C	AT1G29120.2	Hydrolase-like protein family 	LOC_Os06g06080.1	"serine esterase family protein, putative, expressed"	Medtr4g134610.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26480.1.A1_at	B	B1S	POPTR_0006s25520	POPTR_0006s25520 (8:2254)	NA	NA	NA	NA	AT5G11600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g51754.1	expressed protein	Medtr1g007400.1	"Contains a weak similarity to Rap8, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26481.1.S1_a_at	B	B1S	POPTR_0013s09070	POPTR_0013s09070 (8:1867)	NA	NA	NA	NA	AT1G33490.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10140.1); Has 88 Blast hits to 88 proteins in 29 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os05g01510.2	"cytoplasmic membrane protein, putative, expressed"	Medtr4g031680.1	"cytoplasmic membrane protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26485.1.S1_at	B	B2S	POPTR_0006s23690	POPTR_0006s23690 (6:1870)//POPTR_0018s08380 (2:1751)	NA	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT5G21930.2	P-type ATPase of Arabidopsis 2 	LOC_Os03g08070.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr3g139220.1	"ATPase, E1-E2 type "	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.26501.1.A1_at	B	B2S	POPTR_0011s00380	POPTR_0011s00380 (5:893)//POPTR_0011s00370 (3:744)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26522.1.S1_at	B	B4S	POPTR_0017s04190	POPTR_0017s04160 (4:240)//POPTR_0247s00220 (4:240)//POPTR_0017s04190 (6:230)//POPTR_0017s04080 (3:214)	NA	NA	Q9FID6	Probable receptor-like protein kinase At5g39020	AT4G18250.1	"receptor serine/threonine kinase, putative "	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr1g034870.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.26531.1.S1_at	B	B1S	POPTR_0013s03710	POPTR_0013s03710 (8:265)	NA	NA	Q9SQZ9	UPF0424 protein At3g04780	AT3G04780.1	Protein of unknown function (DUF1000) 	LOC_Os03g58130.1	"thioredoxin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26540.1.A1_at	B	B1S	POPTR_0014s06200	POPTR_0014s06200 (3:270)	NA	NA	NA	NA	AT3G60680.1	Plant protein of unknown function (DUF641) 	LOC_Os10g36400.1	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26553.1.A1_at	B	B1S	POPTR_0016s14420	POPTR_0016s14420 (4:2350)	NA	NA	NA	NA	AT2G38550.1	Transmembrane proteins 14C 	LOC_Os01g60650.1	"non-green plastid inner envelope membrane protein, putative, expressed"	Medtr7g080440.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
PtpAffx.26554.1.A1_at	B	B2S	POPTR_0019s02150	POPTR_0060s00240 (0:169)//POPTR_0019s02150 (0:169)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.26580.2.S1_at	B	B1S	POPTR_0013s14310	POPTR_0013s14310 (4:488)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26591.1.A1_at	B	B1S	POPTR_0019s03530	POPTR_0019s03530 (1:217)	NA	NA	O07051	L-allo-threonine aldolase	AT1G08630.4	threonine aldolase 1 	LOC_Os04g43650.2	"L-allo-threonine aldolase, putative, expressed"	Medtr1g093690.1	"Aromatic amino acid beta-eliminating lyase/threonine aldolase; Polynucleotidyl transferase, Ribonuclease H fold; ; "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity	NA
PtpAffx.26605.1.A1_at	B	B1S	POPTR_0011s12260	POPTR_0011s12260 (2:115)	NA	NA	NA	NA	AT5G53750.1	CBS domain-containing protein 	LOC_Os10g35630.1	"cystathionin beta synthase protein, putative, expressed"	Medtr2g014790.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26657.1.S1_at	B	B1S	POPTR_0008s16490	POPTR_0008s16490 (4:355)	NA	NA	Q9LSW2	Actin-related protein 9	AT5G43500.2	actin-related protein 9 	LOC_Os04g09860.2	"actin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26689.2.S1_at	B	B1S	POPTR_0010s20620	POPTR_0010s20620 (8:1020)	NA	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os03g16150.3	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.26699.1.S1_at	B	B1S	POPTR_0005s09220	POPTR_0005s09220 (8:423)	scaffold_5:6445402-6445815(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26711.1.A1_at	B	B1S	POPTR_0011s00460	POPTR_0011s00460 (8:316)	NA	NA	P34669	Uncharacterized protein ZK686.3	AT1G61790.1	Oligosaccharyltransferase complex/magnesium transporter family protein 	LOC_Os03g36730.1	"OST3/OST6 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26732.1.A1_at	B	B1S	POPTR_0013s06460	POPTR_0013s06460 (4:142)	NA	NA	Q8RXE7	Probable ADP-ribosylation factor GTPase-activating protein AGD14	AT1G08680.1	ARF GAP-like zinc finger-containing protein ZIGA4 	LOC_Os03g20720.1	"GTPase-activating protein, putative, expressed"	Medtr6g102260.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	GO:0005622|intracellular
PtpAffx.26749.1.A1_at	B	B2S	POPTR_0001s05540	POPTR_0001s05540 (8:511)//POPTR_0172s00200 (5:440)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os11g33394.2	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26888.1.S1_at	B	B1S	POPTR_0016s07260	POPTR_0016s07260 (6:467)	NA	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G52500.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58840.1	"Eukaryotic aspartyl protease domain containing protein, expressed"	Medtr5g098350.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26968.1.S1_at	B	B1S	POPTR_0001s35310	POPTR_0001s35310 (1:134)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2704.2.S1_at	B	B1S	POPTR_0008s15370	POPTR_0008s15370 (8:288)	NA	NA	NA	NA	AT3G22520.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 717 Blast hits to 703 proteins in 179 species: Archae - 14; Bacteria - 134; Metazoa - 141; Fungi - 74; Plants - 209; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). "	LOC_Os03g53590.2	expressed protein	Medtr5g006500.1	"CDPK adapter protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2709.3.S1_at	B	B1S	POPTR_0007s10760	POPTR_0007s10760 (6:533)	NA	NA	Q58821	Uncharacterized protein MJ1426	AT4G36910.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os08g22149.1	"CBS domain containing membrane protein, putative, expressed"	Medtr5g016660.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2710.1.S1_at	B	B1S	POPTR_0011s15560	POPTR_0011s15560 (2:696)	NA	NA	Q8L868	"Glucan endo-1,3-beta-glucosidase 11"	AT1G32860.1	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.27215.1.A1_at	B	B1S	POPTR_0006s24690	POPTR_0006s24690 (8:340)	NA	NA	O23969	Pollen-specific protein SF21	AT5G11790.1	N-MYC downregulated-like 2 	LOC_Os02g13150.1	"pollen-specific protein SF21, putative, expressed"	Medtr1g020750.1	"Legume lectin, beta domain; Ndr "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27270.1.S1_at	B	B1S	POPTR_0018s14850	POPTR_0018s14850 (2:1726)	NA	NA	Q8N4V2	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os04g51970.2	"synaptic vesicle 2-related protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27294.1.S1_at	B	B1A	POPTR_0009s03060	POPTR_0009s03060 (6:512)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27384.1.S1_at	B	B1S	POPTR_0001s17900	POPTR_0001s17900 (8:357)	NA	NA	P61817	Sirohydrochlorin ferrochelatase	AT1G50170.1	sirohydrochlorin ferrochelatase B 	LOC_Os02g19440.1	"sirohydrochlorin ferrochelatase, putative, expressed"	Medtr6g005330.2	Cobalamin (vitamin B12) biosynthesis CbiX protein 	GO:0009236|cobalamin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity||GO:0046872|metal ion binding	NA
PtpAffx.274.2.S1_at	B	B1S	POPTR_0002s13330	POPTR_0002s13330 (8:1333)	NA	NA	P82278	"30S ribosomal protein S9, chloroplastic (Fragment)"	AT1G74970.1	ribosomal protein S9 	LOC_Os03g55930.1	"ribosomal protein, putative, expressed"	Medtr1g025880.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.27401.1.S1_at	B	B1S	POPTR_0016s13990	POPTR_0016s13990 (8:309)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27419.1.A1_at	B	B1S	POPTR_0006s13760	POPTR_0006s13760 (7:1235)	NA	NA	Q6CBH3	"Probable hexaprenyl pyrophosphate synthase, mitochondrial"	AT2G34630.2	geranyl diphosphate synthase 1 	LOC_Os06g46450.1	"polyprenyl synthetase, putative, expressed"	Medtr5g019360.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.27422.1.S1_at	B	B1S	POPTR_0009s05450	POPTR_0009s05450 (2:430)	NA	NA	P27880	18.2 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27422.1.S1_x_at	B	B1S	POPTR_0009s05450	POPTR_0009s05450 (4:501)	NA	NA	P27880	18.2 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27422.2.A1_at	B	B2S	POPTR_0009s05440	POPTR_0009s05440 (4:689)//POPTR_0009s05450 (0:522)	NA	NA	P02519	17.3 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27423.1.S1_at	B	B1S	POPTR_0001s09640	POPTR_0001s09640 (7:124)	NA	NA	NA	NA	AT1G75060.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g08450.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27441.1.S1_at	B	B3S	POPTR_0009s13110	POPTR_0009s13100 (0:1293)//POPTR_0009s13105 (0:896)//POPTR_0009s13110 (8:545)	NA	NA	Q651D5	Probable aquaporin PIP2-7	AT3G61430.2	plasma membrane intrinsic protein 1A 	LOC_Os09g36930.1	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.27502.1.A1_at	B	B1S	POPTR_0098s00310	POPTR_0098s00310 (5:235)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.277.1.S1_at	B	B1S	POPTR_0015s04870	POPTR_0015s04870 (8:2186)	NA	NA	Q8VWG7	TPR repeat-containing thioredoxin TDX	AT3G17880.2	tetraticopeptide domain-containing thioredoxin 	LOC_Os09g23650.1	"FAM10 family protein, putative, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.2771.1.S1_at	B	B1S	POPTR_0016s06950	POPTR_0016s06950 (0:123)	NA	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr8g081920.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.27712.1.S1_at	B	B1S	POPTR_0009s14570	POPTR_0009s14570 (8:342)	NA	NA	Q9LMA1	Probable flavin-containing monooxygenase 1	AT1G19250.1	flavin-dependent monooxygenase 1 	LOC_Os04g14690.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr8g132980.1	"Amine oxidase; Dimethylaniline monooxygenase, N-oxide-forming "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27738.1.S1_at	B	B1S	POPTR_0012s02900	POPTR_0012s02900 (0:47)	NA	NA	Q76LC6	RNA-binding protein 24	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g14190.1	"RNA recognition motif containing protein, putative"	Medtr3g122940.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.27789.1.S1_at	B	B1S	POPTR_0005s07920	POPTR_0005s07920 (8:1189)	NA	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.2779.1.S1_s_at	B	B1S	POPTR_0001s04130	POPTR_0001s04130 (0:179)	scaffold_1:3265554-3265921(+) (11)	NA	Q9LVC0	Arabinogalactan peptide 14	AT5G56540.1	arabinogalactan protein 14 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27878.2.S1_at	B	B1S	POPTR_0007s01400	POPTR_0007s01400 (8:433)	NA	NA	Q9SGP6	Glutaredoxin-C9	AT1G28480.1	Thioredoxin superfamily protein 	LOC_Os01g47760.1	"OsGrx_I1 - glutaredoxin subgroup III, expressed"	Medtr4g108920.1	"Monothiol glutaredoxin-S5, related "	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.2788.3.S1_at	B	B1S	POPTR_0004s18340	POPTR_0004s18340 (5:748)	NA	NA	Q5PNS9	Probable protein phosphatase 2C 64	AT4G38520.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27900.1.S1_at	B	B1S	POPTR_0018s05080	POPTR_0018s05080 (4:822)	NA	NA	P48731	Homeobox protein ATH1	AT4G32980.1	homeobox gene 1 	LOC_Os02g13310.1	"homeobox domain containing protein, expressed"	Medtr1g020740.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.27986.1.S1_at	B	B1S	POPTR_0006s12420	POPTR_0006s12420 (5:319)	NA	NA	O04375	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform	AT5G03470.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g47790.3	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.28027.2.S1_at	B	B1S	POPTR_0014s07130	POPTR_0014s07130 (0:33)	NA	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.28041.1.S1_at	B	B1S	POPTR_0002s04370	POPTR_0002s04370 (8:899)	scaffold_2:2726022-2726914(+) (9)	NA	Q54F15	Iron-sulfur protein NUBPL	AT4G19540.1	IND1(iron-sulfur protein required for NADH dehydrogenase)-like 	LOC_Os03g42880.1	"nucleotide-binding protein-like, putative, expressed"	Medtr6g102220.1	Mrp 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
PtpAffx.28042.1.S1_at	B	B1S	POPTR_0010s16170	POPTR_0010s16170 (8:406)	NA	NA	NA	NA	AT1G48090.1	calcium-dependent lipid-binding family protein 	LOC_Os02g27110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28059.1.S1_at	B	B1S	POPTR_0005s14630	POPTR_0005s14630 (8:688)	NA	NA	A0JMW6	Transmembrane protein 214-A	AT1G70770.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28066.1.S1_at	B	B1A	POPTR_0001s09910	POPTR_0001s09910 (4:89)	NA	NA	P22503	Endoglucanase	AT4G09740.1	glycosyl hydrolase 9B14 	LOC_Os08g29770.1	"endoglucanase, putative, expressed"	Medtr5g010040.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.28131.1.A1_at	B	B1S	POPTR_0011s12030	POPTR_0011s12030 (0:79)	NA	NA	Q9EPI0	Xylosyltransferase 2	AT3G15350.2	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g10440.1	"xylosyltransferase, putative, expressed"	Medtr2g100560.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.28188.1.A1_at	B	B1S	POPTR_0002s01430	POPTR_0002s01430 (7:403)	scaffold_2:753322-753874(+) (9)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47420.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g023220.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28224.2.S1_a_at	B	B1S	POPTR_0016s01900	POPTR_0016s01900 (8:453)	NA	NA	Q9Y5K3	Choline-phosphate cytidylyltransferase B	AT2G32260.1	phosphorylcholine cytidylyltransferase 	LOC_Os02g07720.2	"cytidylyltransferase domain containing protein, expressed"	Medtr4g089770.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.28224.6.S1_at	B	B1S	POPTR_0016s01900	POPTR_0016s01900 (7:306)	NA	NA	Q9Y5K3	Choline-phosphate cytidylyltransferase B	AT2G32260.1	phosphorylcholine cytidylyltransferase 	LOC_Os02g07720.2	"cytidylyltransferase domain containing protein, expressed"	Medtr4g089770.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.28232.1.A1_at	B	B1S	POPTR_0013s10510	POPTR_0013s10510 (7:426)	NA	NA	P37142	"Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment)"	AT4G19710.2	aspartate kinase-homoserine dehydrogenase ii 	LOC_Os08g25390.1	"bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g132760.2	"Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016491|oxidoreductase activity||GO:0050661|NADP or NADPH binding	NA
PtpAffx.28262.1.S1_at	B	B1S	POPTR_0004s03390	POPTR_0004s03390 (5:390)	NA	NA	O02414	"Dynein light chain LC6, flagellar outer arm"	AT4G27360.1	Dynein light chain type 1 family protein 	LOC_Os01g55510.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr6g099400.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.28264.1.S1_at	B	B1S	POPTR_0007s10280	POPTR_0007s10280 (7:417)	NA	NA	O22193	U-box domain-containing protein 4	AT2G23140.1	RING/U-box superfamily protein with ARM repeat domain 	LOC_Os08g01900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.283.2.A1_x_at	B	B1S	POPTR_0006s13900	POPTR_0006s13900 (7:593)	NA	NA	P13708	Sucrose synthase	AT3G43190.1	sucrose synthase 4 	LOC_Os06g09450.7	"sucrose synthase, putative, expressed"	Medtr8g133160.1	Sucrose synthase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.28306.1.S1_at	B	B1S	POPTR_0002s11910	POPTR_0002s11910 (8:2274)	scaffold_2:8829004-8831434(-) (11)	NA	NA	NA	AT1G59600.1	ZCW7 	LOC_Os07g39730.2	"ZCW7, putative, expressed"	Medtr1g023270.1	"ZCW7, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28451.1.A1_at	B	B1S	POPTR_0005s26910	POPTR_0005s26910 (8:270)	NA	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G42220.1	Ubiquitin-like superfamily protein 	LOC_Os07g31540.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.2	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28451.2.S1_at	B	B1S	POPTR_0002s01490	POPTR_0002s01490 (2:558)	NA	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G42220.1	Ubiquitin-like superfamily protein 	LOC_Os07g31540.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28458.1.S1_at	B	B1S	POPTR_0005s11660	POPTR_0005s11660 (7:373)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g021780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28468.1.A1_at	B	B1S	POPTR_0005s07300	POPTR_0005s07300 (5:419)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28486.1.S1_at	B	B3S	POPTR_0004s15490	POPTR_0004s15490 (8:568)//POPTR_0004s15500 (0:263)//POPTR_0004s15510 (1:164)	scaffold_4:16133049-16135753(+) (10)	NA	Q8BKX6	Serine/threonine-protein kinase SMG1	AT1G50030.2	target of rapamycin 	LOC_Os03g52794.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g093180.1	hypothetical protein 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.28527.1.S1_at	B	B1S	POPTR_0008s07210	POPTR_0008s07210 (1:55)	NA	NA	Q9LYN6	Probable inactive receptor-like protein kinase At3g56050	AT2G40270.2	Protein kinase family protein 	LOC_Os03g18370.1	"MRH1, putative, expressed"	Medtr1g102890.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.28572.1.S1_at	B	B2S	POPTR_0003s20800	POPTR_0003s20800 (6:531)//POPTR_0001s03890 (5:473)	NA	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT5G56350.1	Pyruvate kinase family protein 	LOC_Os01g16960.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.28581.1.S1_at	B	B1S	POPTR_0016s14920	POPTR_0016s14920 (5:161)	scaffold_16:14006481-14006882(+) (11)	NA	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28591.2.A1_at	B	B1S	POPTR_0019s12050	POPTR_0019s12050 (7:179)	NA	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G06230.3	global transcription factor group E4 	LOC_Os02g15220.2	"bromodomain containing protein, expressed"	Medtr4g109460.1	Bromodomain; Protein of unknown function GLTT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28662.1.S1_at	B	B1S	POPTR_0009s05770	POPTR_0009s05770 (0:13)	scaffold_9:5786515-5786980(-) (11)	NA	NA	NA	AT3G20898.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g080740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2868.1.A1_at	B	B1S	POPTR_0013s14850	POPTR_0013s14850 (5:270)	scaffold_13:14941662-14942028(-) (11)	NA	NA	NA	AT3G09280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	AC229702_4.1	hypothetical protein AC229702.6 44466-44191 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28744.1.A1_at	B	B1A	POPTR_0005s21440	POPTR_0005s21440 (2:52)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28763.1.S1_at	B	B1S	POPTR_0001s26430	POPTR_0001s26430 (0:20)	scaffold_1:25469603-25470390(-) (9)	NA	Q38873	Calcium-dependent protein kinase 7	AT5G12480.1	calmodulin-domain protein kinase 7 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.28803.1.S1_at	B	B1S	POPTR_0006s03510	POPTR_0006s03510 (7:229)	scaffold_6:2280343-2280731(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28819.1.S1_at	B	B1S	POPTR_0002s12820	POPTR_0002s12820 (8:268)	NA	NA	NA	NA	AT2G26570.1	Plant protein of unknown function (DUF827) 	LOC_Os03g27800.1	"paramyosin, putative, expressed"	Medtr3g147820.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28823.1.S1_at	B	B1S	POPTR_0001s04790	POPTR_0001s04790 (8:1528)	NA	NA	Q54WW7	Probable serine/threonine-protein kinase DDB_G0279405	AT3G45240.2	geminivirus rep interacting kinase 1 	LOC_Os03g50330.1	"CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g110530.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.28858.1.S1_at	B	B1S	POPTR_0009s00930	POPTR_0009s00930 (8:688)	NA	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G27980.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28867.2.A1_at	B	B1S	POPTR_0002s19200	POPTR_0002s19200 (0:101)	NA	NA	Q9ZST4	Nitrogen regulatory protein P-II homolog	AT4G01900.1	GLNB1 homolog 	LOC_Os05g04220.1	"nitrogen regulatory protein P-II, putative, expressed"	Medtr7g133450.1	Nitrogen regulatory protein P-II; 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0030234|enzyme regulator activity	NA
PtpAffx.289.1.S1_x_at	B	B1S	POPTR_0017s14410	POPTR_0017s14410 (7:321)	scaffold_17:14476688-14477152(+) (11)	NA	Q96502	Zinc finger protein CONSTANS-LIKE 2	AT3G02380.1	CONSTANS-like 2 	LOC_Os06g16370.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr1g016230.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.28903.1.S1_at	B	B1S	POPTR_0005s08090	POPTR_0005s08090 (8:400)	NA	NA	NA	NA	AT4G39810.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os10g26730.1	"exonuclease, putative, expressed"	Medtr4g140330.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28932.2.S1_at	B	B1S	POPTR_0002s09400	POPTR_0002s09400 (5:496)	NA	NA	Q55CU8	Random slug protein 5	AT4G08690.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g51610.2	"CRAL/TRIO domain containing protein, expressed"	CU651566_8.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal CU651566.9 36825-34547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28948.1.S1_at	B	B1S	POPTR_0014s13890	POPTR_0014s13890 (2:291)	scaffold_14:10152946-10154117(+) (10)	NA	NA	NA	AT2G31040.1	ATP synthase protein I -related 	LOC_Os01g48300.4	"ATP synthase protein I related, putative, expressed"	Medtr4g109670.1	"ATP synthase protein I -related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28954.1.S1_at	B	B1S	POPTR_0008s04530	POPTR_0008s04530 (8:409)	scaffold_8:2584145-2584722(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28955.1.S1_at	B	B1S	POPTR_0006s08350	POPTR_0006s08350 (8:960)	scaffold_6:6075481-6076558(-) (9)	NA	Q9SJM7	Uridine nucleosidase 1	AT2G36310.1	uridine-ribohydrolase 1 	LOC_Os08g44370.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr7g127040.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28960.1.A1_at	B	B2S	POPTR_0001s03180	POPTR_0001s03180 (8:456)//POPTR_0003s03420 (5:300)	NA	NA	NA	NA	AT1G32730.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF702 (InterPro:IPR007818); Has 120 Blast hits to 118 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 63; Fungi - 4; Plants - 33; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os08g03550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.28983.1.S1_a_at	B	B1S	POPTR_0001s34110	POPTR_0001s34110 (8:78)	NA	NA	Q94IG7	"Protoporphyrinogen oxidase, chloroplastic/mitochondrial"	AT5G14220.1	Flavin containing amine oxidoreductase family 	LOC_Os04g41260.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr8g142180.1	Protoporphyrinogen oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.28983.1.S1_at	B	B1S	POPTR_0001s34110	POPTR_0001s34110 (4:1243)	NA	NA	Q94IG7	"Protoporphyrinogen oxidase, chloroplastic/mitochondrial"	AT5G14220.1	Flavin containing amine oxidoreductase family 	LOC_Os04g41260.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr8g142180.1	Protoporphyrinogen oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.28983.2.S1_at	B	B1S	POPTR_0001s34110	POPTR_0001s34110 (5:601)	NA	NA	Q94IG7	"Protoporphyrinogen oxidase, chloroplastic/mitochondrial"	AT5G14220.1	Flavin containing amine oxidoreductase family 	LOC_Os04g41260.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr8g142180.1	Protoporphyrinogen oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.28989.1.S1_at	B	B1S	POPTR_0003s02760	POPTR_0003s02760 (5:2301)	NA	NA	NA	NA	AT3G21290.1	dentin sialophosphoprotein-related 	LOC_Os03g08820.1	expressed protein	AC235757_6.1	Leucine-rich repeat 2 AC235757.1 22800-16554 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2901.2.S1_at	B	B1S	POPTR_0005s25430	POPTR_0005s25430 (7:237)	scaffold_5:23696133-23696447(+) (11)	NA	P36774	Lon protease 2	AT1G75460.1	ATP-dependent protease La (LON) domain protein 	LOC_Os07g32560.1	"ATP-dependent protease, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
PtpAffx.29015.1.S1_at	B	B1S	POPTR_0005s17960	POPTR_0005s17960 (0:266)	scaffold_5:15812527-15813642(+) (10)//scaffold_5:15882287-15883321(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29018.1.S1_at	B	B2S	POPTR_0001s05915	POPTR_0001s05940 (3:226)//POPTR_0001s05915 (3:205)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29056.1.S1_at	B	B1S	POPTR_0006s24160	POPTR_0006s24160 (4:511)	NA	NA	Q96MB7	Putative nuclease HARBI1	AT5G12010.1	"unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os01g40070.1	expressed protein	Medtr1g019300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29067.1.S1_at	B	B2S	POPTR_0011s01040	POPTR_0011s01040 (4:236)//POPTR_0001s46200 (2:188)	scaffold_11:545669-546016(-) (9)//scaffold_1419:1606-2045(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29072.1.S1_at	B	B1S	POPTR_0005s23600	POPTR_0005s23600 (5:221)	NA	NA	Q8GY55	Protein TIFY 4B	AT4G14720.1	TIFY domain/Divergent CCT motif family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29091.1.S1_at	B	B1S	POPTR_0018s02700	POPTR_0018s02700 (8:455)	NA	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.29117.1.A1_at	B	B1S	POPTR_0005s26100	POPTR_0005s26100 (0:76)	NA	NA	NA	NA	AT1G19980.1	cytomatrix protein-related 	LOC_Os04g02680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29122.1.A1_at	B	B1S	POPTR_0002s08210	POPTR_0002s08210 (8:598)	NA	NA	Q9SCJ9	Ubiquitin carboxyl-terminal hydrolase 26	AT3G49600.1	ubiquitin-specific protease 26 	LOC_Os03g09260.1	"ubiquitin carboxyl-terminal hydrolase 26, putative, expressed"	Medtr3g133630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.29126.1.A1_at	B	B1S	POPTR_0013s08240	POPTR_0013s08240 (4:154)	NA	NA	Q9CYI4	Putative RNA-binding protein Luc7-like 1	AT3G03340.1	LUC7 related protein 	LOC_Os03g62640.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29127.2.S1_at	B	B1S	POPTR_0007s10730	POPTR_0007s10730 (3:439)	NA	NA	O95239	Chromosome-associated kinesin KIF4A	AT5G47820.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g147320.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.29131.2.S1_at	B	B1S	POPTR_0014s10530	POPTR_0014s10530 (6:916)	NA	NA	Q9SE96	GEM-like protein 1	AT1G28200.1	FH interacting protein 1 	LOC_Os03g08860.1	"GRAM domain containing protein, expressed"	Medtr2g092150.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29133.1.S1_at	B	B1A	POPTR_0010s12570	POPTR_0010s12570 (5:443)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29136.1.S1_at	B	B2S	POPTR_0002s12790	POPTR_0515s00220 (7:601)//POPTR_0002s12790 (7:601)	NA	NA	P17859	Alpha-amylase	AT4G25000.1	alpha-amylase-like 	LOC_Os08g36910.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
PtpAffx.29147.1.S1_at	B	B1S	POPTR_0030s00510	POPTR_0030s00510 (5:791)	NA	NA	NA	NA	AT3G04890.1	Uncharacterized conserved protein (DUF2358) 	LOC_Os07g10495.1	expressed protein	Medtr1g096340.2	"SOUL3-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29149.1.S1_at	B	B1A	POPTR_0006s24720	POPTR_0006s24720 (7:421)	NA	NA	NA	NA	AT1G23550.1	similar to RCD one 2 	LOC_Os03g12820.2	"ATP8, putative, expressed"	Medtr3g113780.1	"PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29151.1.S1_at	B	B1S	POPTR_0009s10660	POPTR_0009s10660 (6:369)	NA	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT2G03550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.29162.1.S1_at	B	B1S	POPTR_0009s03910	POPTR_0009s03910 (6:226)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29169.1.A1_at	B	B1S	POPTR_0001s03420	POPTR_0001s03420 (8:343)	scaffold_1:2775745-2776150(+) (9)	NA	P26413	Heat shock 70 kDa protein	AT1G16030.1	heat shock protein 70B 	LOC_Os05g38530.1	"DnaK family protein, putative, expressed"	Medtr8g145020.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29172.1.S1_at	B	B1S	POPTR_0012s06260	POPTR_0012s06260 (4:488)	NA	NA	O13983	Putative ATP-dependent helicase hrq1	AT5G08110.1	nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases 	LOC_Os07g41564.1	"DEAD/DEAH box helicase domain protein, putative"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.29173.1.S1_at	B	B1A	POPTR_0006s19510	POPTR_0006s19510 (4:224)	NA	NA	NA	NA	AT5G57830.1	"Protein of unknown function, DUF593 "	LOC_Os08g34340.1	"DUF593 domain containing protein, expressed"	Medtr8g144910.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29174.1.S1_at	B	B1S	POPTR_0006s12670	POPTR_0006s12670 (5:928)	NA	NA	Q9LSL9	Pentatricopeptide repeat-containing protein At5g65560	AT5G65560.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g47570.1	"PPR repeat containing protein, expressed"	Medtr5g033110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29179.1.A1_at	B	B1S	POPTR_0008s20850	POPTR_0008s20850 (8:353)	NA	NA	O65041	NEDD8-activating enzyme E1 catalytic subunit	AT5G19180.1	E1 C-terminal related 1 	LOC_Os01g16540.1	"NEDD8-activating enzyme E1 catalytic subunit, putative, expressed"	Medtr8g146250.1	"Ubiquitin-activating enzyme, E1 "	GO:0045116|protein neddylation||GO:0044260|cellular macromolecule metabolic process	GO:0016881|acid-amino acid ligase activity||GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.29180.2.S1_at	B	B1S	POPTR_0001s46690	POPTR_0001s46690 (7:180)	NA	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G01980.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.29200.1.S1_at	B	B1S	POPTR_0008s08490	POPTR_0008s08490 (0:190)	NA	NA	Q92804	TATA-binding protein-associated factor 2N	AT1G50300.1	TBP-associated factor 15 	LOC_Os09g12800.1	"zinc finger Ran-binding domain-containing protein 2, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.29210.1.A1_at	B	B1S	POPTR_0009s08800	POPTR_0009s08800 (1:68)	scaffold_9:7956654-7957141(-) (11)	NA	Q9SUG3	Inositol-tetrakisphosphate 1-kinase 2	AT4G08170.2	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os03g12840.2	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr5g005520.1	"Ribosomal protein L19; Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.29235.1.A1_at	B	B1S	POPTR_0018s03020	POPTR_0018s03020 (8:501)	NA	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g40818.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29238.1.A1_at	B	B1S	POPTR_0002s11580	POPTR_0002s11580 (2:128)	scaffold_2:8644585-8644873(-) (9)	NA	Q9VVE5	RNA-binding protein Musashi homolog Rbp6	AT1G58470.1	RNA-binding protein 1 	LOC_Os07g39560.3	"RNA recognition motif containing protein, putative, expressed"	Medtr2g030270.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.29241.1.A1_at	B	B1S	POPTR_0011s13600	POPTR_0011s13600 (3:273)	NA	NA	Q9FH36	Probable galacturonosyltransferase 12	AT5G54690.1	galacturonosyltransferase 12 	LOC_Os12g38930.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g096780.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.29250.1.A1_at	B	B1S	POPTR_0002s20910	POPTR_0002s20910 (4:268)	NA	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29330.1.A1_at	B	B1A	POPTR_0008s21680	POPTR_0008s21680 (6:311)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29385.1.A1_at	B	B1S	POPTR_0011s04630	POPTR_0011s04630 (8:486)	scaffold_11:4580868-4581359(-) (9)	NA	Q99685	Monoglyceride lipase	AT1G11090.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g37840.1	"lipase, putative, expressed"	Medtr1g108370.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.294.4.S1_at	B	B1S	POPTR_0006s21140	POPTR_0006s21140 (0:210)	NA	NA	Q9LMR5	F-box/kelch-repeat protein At1g15670	AT1G15670.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os06g39370.1	"OsFBK16 - F-box domain and kelch repeat containing protein, expressed"	Medtr4g134000.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29519.2.A1_at	B	B1S	POPTR_0010s14380	POPTR_0010s14380 (7:683)	NA	NA	Q550W1	Uncharacterized CDP-alcohol phosphatidyltransferase class-I family protein 3	AT1G13560.1	aminoalcoholphosphotransferase 1 	LOC_Os02g02750.1	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr3g017160.1	CDP-alcohol phosphatidyltransferase 	GO:0008654|phospholipid biosynthetic process	"GO:0016780|""phosphotransferase activity, for other substituted phosphate groups"""	GO:0016020|membrane
PtpAffx.29621.1.A1_at	B	B1S	POPTR_0004s06981	POPTR_0004s06981 (4:197)	NA	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29862.1.S1_at	B	B1S	POPTR_0011s03030	POPTR_0011s03030 (6:467)	scaffold_11:3002602-3003225(-) (9)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT5G46550.1	DNA-binding bromodomain-containing protein 	LOC_Os07g32420.2	"bromodomain domain containing protein, expressed"	Medtr2g021880.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29865.1.S1_at	B	B1S	POPTR_0003s03270	POPTR_0003s03270 (7:1309)	NA	NA	Q9SLG9	Phosphatidylinositol-4-phosphate 5-kinase 5	AT4G17080.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os10g41534.3	"ICE-like protease p20 domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29897.1.S1_at	B	B1S	POPTR_0012s13170	POPTR_0012s13170 (3:143)	scaffold_12:13438917-13439487(-) (11)	NA	Q9M1D8	Pentatricopeptide repeat-containing protein At3g60050	AT3G60050.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g36190.1	"PPR repeat domain containing protein, putative, expressed"	AC235674_18.1	Pentatricopeptide repeat AC235674.1 92108-90603 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30032.2.S1_at	B	B1S	POPTR_0009s14130	POPTR_0009s14130 (1:1782)	NA	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr1g143280.1	Tyrosine protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.30045.1.S1_at	B	B1S	POPTR_0004s11570	POPTR_0004s11570 (4:306)	NA	NA	Q54KZ8	Eukaryotic translation initiation factor 3 subunit M	AT5G15610.2	Proteasome component (PCI) domain protein 	LOC_Os04g01290.1	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30074.1.S1_at	B	B1S	POPTR_0002s20720	POPTR_0002s20720 (8:31)	NA	NA	Q43582	Probable U6 snRNA-associated Sm-like protein LSm4	AT5G27720.1	Small nuclear ribonucleoprotein family protein 	LOC_Os01g15310.1	"LSM domain containing protein, expressed"	Medtr7g130480.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30092.1.A1_at	B	B2S	POPTR_0019s12720	POPTR_0019s12720 (0:474)//POPTR_0019s12750 (0:474)	NA	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g110810.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.3010.1.A1_at	B	B1S	POPTR_0011s09190	POPTR_0011s09190 (5:118)	NA	NA	O43196	MutS protein homolog 5	AT3G20475.1	MUTS-homologue 5 	LOC_Os05g41880.1	"mutS domain V family protein, expressed"	Medtr5g100500.1	MutS III 	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.30100.1.S1_at	B	B1S	POPTR_0005s12620	POPTR_0005s12620 (8:230)	NA	NA	Q9SCQ7	Acidic leucine-rich nuclear phosphoprotein 32-related protein	AT3G50690.1	Leucine-rich repeat (LRR) family protein 	LOC_Os07g41694.1	"acidic leucine-rich nuclear phosphoprotein 32-related protein 1, putative, expressed"	Medtr8g093560.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.3014.1.S1_at	B	B1S	POPTR_0006s01230	POPTR_0006s01230 (7:130)	scaffold_6:685292-685491(+) (11)	NA	O74503	Upstream activation factor subunit spp27	AT4G22360.1	SWIB complex BAF60b domain-containing protein 	LOC_Os08g39310.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr3g076380.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30151.2.S1_at	B	B1S	POPTR_0005s25240	POPTR_0005s25240 (1:453)	NA	NA	Q9SFZ3	Transcription factor bHLH110	AT1G27660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01600.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30195.2.S1_at	B	B1S	POPTR_0019s13910	POPTR_0019s13910 (0:250)	NA	NA	NA	NA	AT4G10270.1	Wound-responsive family protein 	LOC_Os04g54280.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr2g095470.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30221.1.A1_a_at	B	B1S	POPTR_0001s17390	POPTR_0001s17390 (8:273)	scaffold_1:14188249-14188628(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30221.3.S1_at	B	B1S	POPTR_0001s17380	POPTR_0001s17380 (0:103)	NA	NA	NA	NA	AT4G32440.1	Plant Tudor-like RNA-binding protein 	LOC_Os02g11000.2	"agenet domain containing protein, putative, expressed"	Medtr8g119470.1	ENT; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.30221.3.S1_s_at	B	B1S	POPTR_0001s17380	POPTR_0001s17380 (4:1035)	scaffold_1:14185972-14187377(+) (11)	NA	NA	NA	AT4G32440.1	Plant Tudor-like RNA-binding protein 	LOC_Os02g11000.2	"agenet domain containing protein, putative, expressed"	Medtr8g119470.1	ENT; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.30278.1.S1_at	B	B2S	POPTR_0003s05970	POPTR_0003s05980 (7:473)//POPTR_0003s05970 (7:467)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g121720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30281.1.S1_at	B	B1S	POPTR_0016s00650	POPTR_0016s00650 (7:446)	scaffold_16:214423-214904(-) (9)	NA	Q9SUA4	Oligopeptide transporter 5	AT4G26590.1	oligopeptide transporter 5 	LOC_Os08g38400.1	"oligopeptide transporter, putative, expressed"	Medtr5g103810.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3035.1.S1_a_at	B	B1S	POPTR_0012s04150	POPTR_0012s04150 (8:998)	NA	NA	Q9D0M2	Cell division cycle-associated protein 7	AT4G37110.1	Zinc-finger domain of monoamine-oxidase A repressor R1 	LOC_Os03g50420.1	expressed protein	Medtr6g080900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30368.2.S1_at	B	B1S	POPTR_0006s10790	POPTR_0006s10790 (0:147)	NA	NA	NA	NA	AT3G51730.1	saposin B domain-containing protein 	LOC_Os01g07250.1	"saposin-like type B, region 1 family protein, putative, expressed"	NA	NA	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.30376.1.S1_at	B	B1S	POPTR_0008s11900	POPTR_0008s11900 (3:195)	scaffold_8:7641977-7642483(+) (9)	NA	Q9LUA2	Ethylene-responsive transcription factor ERF119	AT3G25890.2	Integrase-type DNA-binding superfamily protein 	LOC_Os09g13940.2	"AP2 domain containing protein, expressed"	AC233660_41.1	Pathogenesis-related transcriptional factor and ERF AC233660.2 151624-147758 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.30421.1.A1_at	B	B1S	POPTR_0001s09830	POPTR_0001s09830 (0:271)	NA	NA	P92947	"Monodehydroascorbate reductase, chloroplastic"	AT1G63940.2	monodehydroascorbate reductase 6 	LOC_Os08g05570.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.30500.1.A1_at	B	B1S	POPTR_0016s07600	POPTR_0016s07600 (5:429)	NA	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os11g05650.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30580.1.A1_at	B	B1S	POPTR_0011s12240	POPTR_0011s12240 (4:1199)	NA	NA	NA	NA	AT3G15420.1	"Transcription factor TFIIIC, tau55-related protein "	LOC_Os04g44770.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30596.1.A1_at	B	B1S	POPTR_0005s20360	POPTR_0005s20360 (7:348)	NA	NA	NA	NA	AT1G77400.1	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes - 56 (source: NCBI BLink). 	NA	NA	Medtr3g100690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30605.1.S1_at	B	B1S	POPTR_0008s07330	POPTR_0008s07330 (4:374)	NA	NA	NA	NA	AT2G40320.1	TRICHOME BIREFRINGENCE-LIKE 33 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr5g090760.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30617.1.S1_a_at	B	B1S	POPTR_0012s05210	POPTR_0012s05210 (7:211)	NA	NA	Q8GWK7	Transcription factor BEE 3	AT1G73830.1	BR enhanced expression 3 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr6g028080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.30617.3.A1_at	B	B1S	POPTR_0015s03760	POPTR_0015s03760 (6:576)	scaffold_15:3580397-3581230(-) (11)	NA	Q8GWK7	Transcription factor BEE 3	AT1G73830.1	BR enhanced expression 3 	LOC_Os09g32510.5	"BHLH transcription factor, putative, expressed"	Medtr6g028080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.3064.3.A1_a_at	B	B1S	POPTR_0020s00230	POPTR_0020s00230 (8:31)	NA	NA	NA	NA	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3064.3.A1_at	B	B2S	POPTR_0020s00230	POPTR_0020s00230 (7:266)//POPTR_0006s16630 (5:265)	scaffold_20:212178-212547(-) (11)	NA	NA	NA	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30698.1.S1_at	B	B1S	POPTR_0007s05600	POPTR_0007s05600 (1:40)	NA	NA	NA	NA	AT4G39720.1	VQ motif-containing protein 	LOC_Os08g31660.1	"VQ domain containing protein, putative, expressed"	Medtr3g101450.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30708.1.A1_at	B	B1A	POPTR_0002s09230	POPTR_0002s09230 (3:129)	NA	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os10g21940.1	expressed protein	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30786.1.A1_at	B	B1S	POPTR_0012s03610	POPTR_0012s03610 (1:151)	NA	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
PtpAffx.30793.1.A1_at	B	B1S	POPTR_0009s06680	POPTR_0009s06680 (0:20)	scaffold_9:6405819-6406069(-) (11)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT3G63530.2	RING/U-box superfamily protein 	LOC_Os03g07790.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g037050.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30804.2.A1_at	B	B1S	POPTR_0016s07720	POPTR_0016s07720 (5:220)	NA	NA	Q05B62	Sorting nexin-1	AT5G06140.1	sorting nexin 1 	LOC_Os01g64280.1	"sorting nexin 1, putative, expressed"	Medtr5g081470.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.30871.1.A1_at	B	B1S	POPTR_0005s21960	POPTR_0005s21960 (0:79)	NA	NA	A6QP05	Dehydrogenase/reductase SDR family member 12	AT4G09750.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g39040.1	"dehydrogenase/reductase SDR family member 12, putative, expressed"	Medtr6g035840.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.30879.1.A1_at	B	B1S	POPTR_0010s01690	POPTR_0010s01690 (7:150)	NA	NA	Q6ZQK0	Condensin-2 complex subunit D3	AT4G15890.1	binding 	LOC_Os12g36170.1	"HEAT repeat family protein, putative, expressed"	Medtr7g134000.1	"Condensin-2 complex subunit D3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.309.1.S1_x_at	B	B2S	POPTR_0001s37480	POPTR_0001s37480 (8:363)//POPTR_0001s37490 (4:351)	NA	NA	Q94EG9	Zinc transporter 11	AT1G55910.1	zinc transporter 11 precursor 	LOC_Os03g29850.1	"metal cation transporter, putative, expressed"	Medtr2g117090.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.30901.1.A1_at	B	B1S	POPTR_0009s04710	POPTR_0009s04710 (1:245)	NA	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.30906.1.A1_at	B	B1S	POPTR_0010s03520	POPTR_0010s03520 (8:464)	NA	NA	O65041	NEDD8-activating enzyme E1 catalytic subunit	AT5G19180.1	E1 C-terminal related 1 	LOC_Os01g16540.1	"NEDD8-activating enzyme E1 catalytic subunit, putative, expressed"	Medtr8g146250.1	"Ubiquitin-activating enzyme, E1 "	GO:0045116|protein neddylation||GO:0044260|cellular macromolecule metabolic process	GO:0016881|acid-amino acid ligase activity||GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.30908.1.S1_at	B	B1S	POPTR_0005s27700	POPTR_0005s27700 (6:185)	scaffold_5:25233900-25235683(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30964.1.S1_at	B	B1S	POPTR_0002s18270	POPTR_0002s18270 (6:419)	scaffold_2:14251208-14251708(+) (10)	NA	Q54GD9	Protein arv1 homolog	AT1G01020.1	Arv1-like protein 	LOC_Os03g57090.1	"arv1, putative, expressed"	Medtr7g106480.1	Arv1-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31030.1.A1_at	B	B1S	POPTR_0005s24870	POPTR_0005s24870 (7:568)	NA	NA	Q941D5	Vacuolar protein sorting-associated protein 2 homolog 3	AT1G03950.1	vacuolar protein sorting-associated protein 2.3 	LOC_Os10g33660.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	GO:0015031|protein transport	NA	NA
PtpAffx.31043.1.A1_at	B	B3S	POPTR_0019s04540	POPTR_0019s04540 (7:628)//POPTR_0019s04530 (0:524)//POPTR_0019s04560 (2:443)	NA	NA	NA	NA	AT2G38430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g30140.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31054.1.S1_at	B	B1A	POPTR_0003s03740	POPTR_0003s03740 (1:30)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3110.1.S1_at	B	B1S	POPTR_0011s01590	POPTR_0011s01590 (7:823)	scaffold_11:1112841-1113798(-) (11)	NA	O22299	Homeobox protein knotted-1-like LET6	AT1G62360.1	KNOX/ELK homeobox transcription factor 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g093180.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.31130.1.A1_at	B	B1S	POPTR_0007s03160	POPTR_0007s03160 (7:388)	NA	NA	Q55Z49	Probable kinetochore protein NUF2	AT1G61000.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinetochore protein Nuf2 (InterPro:IPR005549); Has 50972 Blast hits to 29793 proteins in 2070 species: Archae - 902; Bacteria - 7404; Metazoa - 23628; Fungi - 4156; Plants - 2312; Viruses - 158; Other Eukaryotes - 12412 (source: NCBI BLink). 	LOC_Os03g38010.1	"nuf2 family protein, expressed"	Medtr4g064820.1	Nuf2 	GO:0007067|mitosis	NA	"GO:0000775|""chromosome, centromeric region"""
PtpAffx.31159.1.A1_at	B	B1S	POPTR_0018s06850	POPTR_0018s06850 (7:473)	NA	NA	Q9FFW5	Proline-rich receptor-like protein kinase PERK8	AT5G56890.1	Protein kinase superfamily protein 	LOC_Os01g51290.1	"protein kinase family protein, putative, expressed"	Medtr2g045880.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.31182.1.A1_at	B	B1S	POPTR_0002s09710	POPTR_0002s09710 (7:570)	NA	NA	NA	NA	AT1G34640.1	peptidases 	LOC_Os07g43010.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31185.1.A1_at	B	B1S	POPTR_0016s09565	POPTR_0016s09565 (7:159)	scaffold_16:7464672-7465107(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31193.1.A1_at	B	B1S	POPTR_0006s19660	POPTR_0006s19660 (5:290)	scaffold_6:18691961-18692472(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g44200.3	"ZOS6-06 - C2H2 zinc finger protein, expressed"	Medtr8g145170.1	"Zinc finger, U1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31211.1.A1_at	B	B1S	POPTR_0014s14300	POPTR_0014s14300 (1:303)	NA	NA	Q0WW21	Anthocyanin 5-O-glucosyltransferase	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31277.1.A1_at	B	B1S	POPTR_0009s10400	POPTR_0009s10400 (5:835)	NA	NA	Q9M7Q3	ABSCISIC ACID-INSENSITIVE 5-like protein 6	AT4G34000.2	abscisic acid responsive elements-binding factor 3 	LOC_Os09g28310.1	"bZIP transcription factor, putative, expressed"	Medtr4g129920.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.3129.1.S1_at	B	B1S	POPTR_0001s40920	POPTR_0001s40920 (0:95)	NA	NA	Q45223	3-hydroxybutyryl-CoA dehydrogenase	AT3G15290.1	3-hydroxyacyl-CoA dehydrogenase family protein 	LOC_Os01g58380.1	"3-hydroxybutyryl-CoA dehydrogenase, putative, expressed"	Medtr6g093570.1	3-hydroxyacyl-CoA dehydrogenase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.3130.1.S1_at	B	B1S	POPTR_0018s04840	POPTR_0018s04840 (5:407)	NA	NA	Q9LEI8	Profilin-6	AT4G29340.1	profilin 4 	LOC_Os10g17680.1	"profilin domain containing protein, expressed"	Medtr4g160100.1	Plant profilin 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	GO:0015629|actin cytoskeleton
PtpAffx.31307.1.A1_at	B	B1S	POPTR_0008s11580	POPTR_0008s11580 (0:13)	scaffold_8:7375731-7375765(+) (11)	NA	C0LGL4	Probable LRR receptor-like serine/threonine-protein kinase At2g28960	AT1G25570.1	Di-glucose binding protein with Leucine-rich repeat domain 	LOC_Os01g04720.1	"leucine-rich repeat protein-related, putative, expressed"	Medtr5g069200.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31316.1.A1_at	B	B1S	POPTR_0335s00210	POPTR_0335s00210 (6:480)	NA	NA	NA	NA	AT1G28395.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr2g017890.1	"NFD6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31343.1.A1_at	B	B1S	POPTR_0004s04960	POPTR_0004s04960 (7:535)	NA	NA	O80961	MLO-like protein 12	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr4g108950.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.31378.2.S1_a_at	B	B1S	POPTR_0002s10020	POPTR_0002s10020 (1:516)	scaffold_2:7201200-7204982(+) (11)	NA	O94581	Cytochrome c oxidase subunit 6B	AT1G22450.1	cytochrome C oxidase 6B 	LOC_Os07g42910.1	"cytochrome c oxidase subunit, putative, expressed"	Medtr5g073800.1	"Cytochrome oxidase c, subunit VIb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
PtpAffx.31405.1.A1_at	B	B2S	POPTR_0003s09860	POPTR_0003s09860 (5:495)//POPTR_0003s09850 (4:287)	scaffold_3:11049545-11050942(-) (9)	NA	NA	NA	AT1G32080.1	"membrane protein, putative "	LOC_Os10g42780.2	"lrgB-like family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31448.2.A1_at	B	B1S	POPTR_0010s05710	POPTR_0010s05710 (0:78)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31457.1.A1_at	B	B1S	POPTR_0003s10870	POPTR_0003s10870 (5:502)	NA	NA	Q58CV5	Sugar phosphate exchanger 2	AT3G47420.1	phosphate starvation-induced gene 3 	LOC_Os04g46880.2	"transporter, major facilitator family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31484.2.S1_at	B	B1S	POPTR_0016s07570	POPTR_0016s07570 (6:537)	NA	NA	NA	NA	AT3G11570.1	TRICHOME BIREFRINGENCE-LIKE 8 	LOC_Os12g05080.1	"PMR5, putative, expressed"	Medtr8g138150.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31526.1.A1_at	B	B1S	POPTR_0003s18200	POPTR_0003s18200 (7:378)	NA	NA	Q9SZ53	Probable protein phosphatase 2C 60	AT4G31860.1	Protein phosphatase 2C family protein 	LOC_Os06g44210.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31537.1.A1_at	B	B1S	POPTR_0009s04160	POPTR_0009s04160 (0:266)	NA	NA	Q5ZMJ9	Serine/arginine repetitive matrix protein 1	AT2G29210.1	splicing factor PWI domain-containing protein 	LOC_Os03g16369.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g084280.1	Splicing factor PWI 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	NA
PtpAffx.31539.1.A1_at	B	B1S	POPTR_0001s35790	POPTR_0001s35790 (0:165)	NA	NA	Q4R6F8	T-complex protein 1 subunit beta	AT5G20890.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g42220.1	"T-complex protein, putative, expressed"	Medtr3g024690.1	"Protein kinase; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.31540.2.S1_at	B	B1S	POPTR_0013s05630	POPTR_0013s05630 (6:2071)	NA	NA	O75175	CCR4-NOT transcription complex subunit 3	AT5G18230.1	transcription regulator NOT2/NOT3/NOT5 family protein 	LOC_Os03g44900.1	"CCR4-NOT transcription factor, putative, expressed"	Medtr7g100260.1	"Not CCR4-Not complex component, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.31551.1.S1_at	B	B1S	POPTR_0002s11680	POPTR_0002s11680 (8:49)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31610.2.S1_at	B	B1S	POPTR_0011s04510	POPTR_0011s04510 (6:385)	NA	NA	NA	NA	AT1G61240.4	Protein of unknown function (DUF707) 	LOC_Os07g37760.2	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g013740.2	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31635.1.A1_at	B	B2A	POPTR_0001s03180	POPTR_0003s03420 (8:896)//POPTR_0001s03180 (8:896)	NA	NA	NA	NA	AT1G32730.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF702 (InterPro:IPR007818); Has 120 Blast hits to 118 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 63; Fungi - 4; Plants - 33; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os08g03550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31739.1.S1_at	B	B1S	POPTR_0010s12800	POPTR_0010s12800 (3:147)	NA	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G01150.1	RING-H2 finger protein 2B 	LOC_Os02g45710.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235678_1.1	"Zinc finger, RING-type AC235678.1 702-1 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31808.1.S1_at	B	B1A	POPTR_0005s22980	POPTR_0005s22980 (7:270)	scaffold_5:21822604-21822954(-) (9)	NA	NA	NA	AT3G06080.2	Plant protein of unknown function (DUF828) 	LOC_Os12g05080.1	"PMR5, putative, expressed"	Medtr5g035110.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32058.1.S1_at	B	B1S	POPTR_0001s13990	POPTR_0001s13990 (6:497)	NA	NA	O65012	Cytochrome P450 78A4	AT1G74110.1	"cytochrome P450, family 78, subfamily A, polypeptide 10 "	LOC_Os11g29720.1	"cytochrome P450, putative, expressed"	Medtr5g047920.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.3207.2.A1_at	B	B1S	POPTR_0011s02840	POPTR_0011s02840 (8:510)	scaffold_11:2792063-2792597(-) (10)	NA	Q60BH8	Putative pterin-4-alpha-carbinolamine dehydratase	AT1G29810.1	Transcriptional coactivator/pterin dehydratase 	LOC_Os01g47420.1	"pterin-4-alpha-carbinolamine dehydratase, putative, expressed"	Medtr5g019890.1	Transcriptional coactivator/pterin dehydratase 	GO:0006729|tetrahydrobiopterin biosynthetic process	GO:0008124|4-alpha-hydroxytetrahydrobiopterin dehydratase activity	NA
PtpAffx.32089.2.A1_at	B	B1S	POPTR_0015s13410	POPTR_0015s13410 (5:432)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3213.1.S1_at	B	B1S	POPTR_0008s10870	POPTR_0008s10870 (5:316)	NA	NA	Q91YE6	Importin-9	AT1G26170.1	ARM repeat superfamily protein 	LOC_Os06g16280.1	expressed protein	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.32180.1.A1_at	B	B3S	POPTR_0001s40570	POPTR_0001s40600 (0:225)//POPTR_0001s40570 (0:225)//POPTR_0001s40620 (0:225)	NA	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32207.1.S1_at	B	B3S	POPTR_0019s12640	POPTR_0019s12610 (2:817)//POPTR_0019s12660 (3:284)//POPTR_0019s12640 (3:233)	NA	NA	NA	NA	AT2G43780.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g41760.1	conserved hypothetical protein	Medtr7g108270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32256.1.A1_at	B	B1S	POPTR_0014s13240	POPTR_0014s13240 (7:1059)	NA	NA	P93051	Sugar transporter ERD6-like 7	AT2G48020.1	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr8g139840.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.32256.2.A1_at	B	B1S	POPTR_0014s13240	POPTR_0014s13240 (6:604)	NA	NA	P93051	Sugar transporter ERD6-like 7	AT2G48020.1	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr8g139840.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.32260.1.A1_at	B	B3S	POPTR_0011s15490	POPTR_0011s15490 (3:718)//POPTR_0011s15500 (3:718)//POPTR_0011s15530 (3:602)	NA	NA	Q949X0	"Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic"	AT3G15850.1	fatty acid desaturase 5 	NA	NA	Medtr4g005600.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.32354.3.S1_at	B	B1S	POPTR_0018s09380	POPTR_0018s09380 (6:89)	NA	NA	P34105	NADP-dependent malic enzyme	AT1G79750.1	NADP-malic enzyme 4 	LOC_Os01g52500.3	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.32356.1.S1_at	B	B1S	POPTR_0016s05800	POPTR_0016s05800 (6:304)	NA	NA	P52408	"Glucan endo-1,3-beta-glucosidase, basic isoform"	AT3G57270.1	"beta-1,3-glucanase 1 "	LOC_Os01g71340.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g038570.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.32356.1.S1_x_at	B	B1S	POPTR_0016s05800	POPTR_0016s05800 (6:562)	NA	NA	P52408	"Glucan endo-1,3-beta-glucosidase, basic isoform"	AT3G57270.1	"beta-1,3-glucanase 1 "	LOC_Os01g71340.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g038570.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.32367.1.S1_at	B	B1S	POPTR_0002s13860	POPTR_0002s13860 (8:535)	NA	NA	Q0DCT8	Protein kinase G11A	AT2G44830.1	Protein kinase superfamily protein 	LOC_Os04g46180.2	"AGC_PVPK_like_kin82y.11 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32367.2.A1_at	B	B1S	POPTR_0002s13860	POPTR_0002s13860 (0:157)	NA	NA	Q0DCT8	Protein kinase G11A	AT2G44830.1	Protein kinase superfamily protein 	LOC_Os04g46180.2	"AGC_PVPK_like_kin82y.11 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32379.1.A1_at	B	B1S	POPTR_0005s06790	POPTR_0005s06790 (6:430)	NA	NA	NA	NA	AT5G09270.2	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g64190.1	expressed protein	Medtr1g124960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32385.1.A1_at	B	B1S	POPTR_0001s28400	POPTR_0001s28400 (8:430)	scaffold_1:27204392-27204944(-) (11)	NA	Q3EBZ2	F-box protein SKIP23	AT2G17030.1	F-box family protein with a domain of unknown function (DUF295) 	LOC_Os03g58764.1	"OsFBDUF18 - F-box and DUF domain containing protein, expressed"	Medtr8g088880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32385.2.S1_at	B	B1S	POPTR_0001s28400	POPTR_0001s28400 (0:137)	NA	NA	Q3EBZ2	F-box protein SKIP23	AT2G17030.1	F-box family protein with a domain of unknown function (DUF295) 	LOC_Os03g58764.1	"OsFBDUF18 - F-box and DUF domain containing protein, expressed"	Medtr8g088880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32386.2.A1_at	B	B1S	POPTR_0015s08360	POPTR_0015s08360 (8:984)	NA	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.32412.2.S1_at	B	B1S	POPTR_0019s04970	POPTR_0019s04970 (2:322)	NA	NA	NA	NA	AT1G64770.1	NDH-dependent cyclic electron flow 1 	LOC_Os03g06230.1	"galactose mutarotase-like, putative, expressed"	Medtr7g100440.1	Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32481.1.S1_at	B	B1S	POPTR_0014s07680	POPTR_0014s07680 (5:194)	NA	NA	Q9LD43	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic"	AT2G38040.2	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3256.1.S1_at	B	B1S	POPTR_0001s01980	POPTR_0001s01980 (6:201)	scaffold_1:1447380-1447612(-) (9)	NA	NA	NA	AT1G32230.2	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32570.1.S1_at	B	B1S	POPTR_0001s43550	POPTR_0001s43550 (0:539)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr7g105090.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.32627.1.S1_at	B	B1S	POPTR_0007s07690	POPTR_0007s07690 (7:263)	NA	NA	Q9LEY1	Serine carboxypeptidase-like 35	AT5G08260.1	serine carboxypeptidase-like 35 	LOC_Os02g42310.1	"OsSCP8 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g100960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.32651.1.S1_at	B	B1S	POPTR_0002s05050	POPTR_0002s05050 (8:385)	NA	NA	NA	NA	AT1G03080.1	kinase interacting (KIP1-like) family protein 	LOC_Os03g43684.1	"KIP1, putative, expressed"	Medtr1g083940.1	KIP1-like 	NA	NA	GO:0016020|membrane
PtpAffx.32661.1.S1_at	B	B2S	POPTR_0675s00200	POPTR_1018s00210 (6:531)//POPTR_0675s00200 (7:531)	NA	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g48640.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034700.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.32681.1.S1_at	B	B1S	POPTR_0013s13360	POPTR_0013s13360 (4:799)	NA	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32710.1.S1_at	B	B1S	POPTR_0008s00440	POPTR_0008s00440 (0:196)	NA	NA	NA	NA	AT1G78915.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g18720.1	"tetratricopeptide repeat containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32723.3.S1_at	B	B1S	POPTR_0014s10000	POPTR_0014s10000 (8:727)	NA	NA	Q9MAM1	CBL-interacting serine/threonine-protein kinase 9	AT1G01140.1	CBL-interacting protein kinase 9 	LOC_Os03g03510.1	"CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g095470.2	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.3273.1.A1_at	B	B1S	POPTR_0013s09570	POPTR_0013s09570 (6:498)	NA	NA	B1Z9C8	ATP-dependent Clp protease ATP-binding subunit ClpX	AT1G33360.1	ATP-dependent Clp protease 	LOC_Os02g35630.1	"AAA family ATPase, putative, expressed"	Medtr6g070390.1	"ClpX, ATPase regulatory subunit "	NA	GO:0005524|ATP binding	NA
PtpAffx.32736.1.S1_at	B	B1S	POPTR_0003s08200	POPTR_0003s08200 (6:280)	NA	NA	P30825	High affinity cationic amino acid transporter 1	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os04g45950.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.3275.1.S1_at	B	B1S	POPTR_0006s04630	POPTR_0006s04630 (4:473)	NA	NA	Q9QYI3	DnaJ homolog subfamily C member 7	AT2G41520.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.32849.1.S1_at	B	B1S	POPTR_0014s02910	POPTR_0014s02910 (8:945)	NA	NA	Q9LJK2	Abscisic acid 8'-hydroxylase 4	AT3G19270.1	"cytochrome P450, family 707, subfamily A, polypeptide 4 "	LOC_Os09g28390.1	"cytochrome P450, putative, expressed"	Medtr1g024340.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.32857.1.A1_at	B	B1S	POPTR_0002s17610	POPTR_0002s17610 (0:154)	NA	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G46620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g02330.1	"AAA-type ATPase family protein, putative, expressed"	Medtr7g145800.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.32868.1.A1_at	B	B1S	POPTR_0003s09990	POPTR_0003s09990 (8:424)	NA	NA	Q3T130	Transmembrane protein 45B	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os11g40570.3	"plant viral response family protein, putative, expressed"	Medtr5g027370.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32871.1.A1_at	B	B1S	POPTR_0001s45780	POPTR_0001s45780 (8:308)	NA	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.32874.1.A1_at	B	B1S	POPTR_0015s03690	POPTR_0015s03690 (6:538)	NA	NA	NA	NA	AT1G73850.1	Protein of unknown function (DUF1666) 	LOC_Os01g03870.1	expressed protein	Medtr6g028420.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32884.1.S1_at	B	B2S	POPTR_0009s13080	POPTR_0009s13100 (0:92)//POPTR_0009s13080 (1:88)	NA	NA	Q7XSQ9	Probable aquaporin PIP1-2	AT2G16850.1	plasma membrane intrinsic protein 2;8 	LOC_Os04g47220.1	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.32890.1.S1_at	B	B1S	POPTR_0011s07570	POPTR_0011s07570 (6:1468)	NA	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT4G18570.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g49820.1	"chloroplast unusual positioning protein, putative, expressed"	Medtr4g128130.1	"pherophorin - like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32900.1.A1_at	B	B1S	POPTR_0010s12670	POPTR_0010s12670 (1:434)	NA	NA	P43394	Fruit protein pKIWI502	AT1G15140.1	FAD/NAD(P)-binding oxidoreductase 	LOC_Os02g22260.1	"fruit protein PKIWI502, putative, expressed"	Medtr1g137840.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.3295.1.S1_at	B	B1S	POPTR_0006s09430	POPTR_0006s09430 (7:505)	NA	NA	Q8GWP3	Copper transporter 6	AT2G26975.1	Ctr copper transporter family 	LOC_Os01g56420.1	"ctr copper transporter family protein, putative, expressed"	Medtr4g087380.1	Ctr copper transporter 	GO:0006825|copper ion transport	GO:0005375|copper ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.3297.1.S1_at	B	B1S	POPTR_0003s06610	POPTR_0003s06610 (8:265)	NA	NA	B0USF1	Nucleoside diphosphate kinase	AT1G17410.1	Nucleoside diphosphate kinase family protein 	LOC_Os02g35700.1	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.32983.1.S1_at	B	B1S	POPTR_0006s13200	POPTR_0006s13200 (8:255)	scaffold_6:10452372-10452638(+) (9)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT3G53380.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os05g03450.1	"lectin protein kinase family protein, putative, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.3301.1.S1_at	B	B2S	POPTR_0001s02800	POPTR_0001s02810 (4:482)//POPTR_0001s02800 (4:446)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33034.1.S1_at	B	B1S	POPTR_0004s22010	POPTR_0004s22010 (4:404)	NA	NA	Q6MD85	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	AT5G60600.1	4-hydroxy-3-methylbut-2-enyl diphosphate synthase 	LOC_Os02g39160.1	"hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed"	Medtr2g110470.1	IspG protein; Dihydropteroate synthase-like 	GO:0055114|oxidation reduction||GO:0016114|terpenoid biosynthetic process	GO:0046429|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	NA
PtpAffx.33050.1.A1_at	B	B1S	POPTR_0001s14230	POPTR_0001s14230 (7:87)	NA	NA	Q54LQ6	Probable inosine triphosphate pyrophosphatase	AT4G13720.1	Inosine triphosphate pyrophosphatase family protein 	LOC_Os10g31940.1	"inosine triphosphate pyrophosphatase, putative, expressed"	AC235749_26.1	Ham1-like protein AC235749.1 82849-86143 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.33055.1.A1_at	B	B1S	POPTR_0002s19940	POPTR_0002s19940 (0:116)	NA	NA	P38661	Probable protein disulfide-isomerase A6	AT2G47470.1	thioredoxin family protein 	LOC_Os01g23740.1	"OsPDIL2-2  protein disulfide isomerase PDIL2-2, expressed"	Medtr1g107440.1	"Thioredoxin-related; Thioredoxin domain 2; Endoplasmic reticulum ERp29, C-terminal; "	GO:0045454|cell redox homeostasis	NA	GO:0005783|endoplasmic reticulum
PtpAffx.33061.1.A1_at	B	B1S	POPTR_0012s13800	POPTR_0012s13800 (7:118)	NA	NA	Q9FNZ2	Zinc finger CCCH domain-containing protein 48	AT4G25440.1	zinc finger WD40 repeat protein 1 	LOC_Os02g45480.1	"nucleic acid binding protein, putative, expressed"	AC235567_67.1	"Zinc finger, CCCH-type AC235567.1 251711-249065 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.3313.1.S1_at	B	B1S	POPTR_0002s15980	POPTR_0002s15980 (8:407)	NA	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT4G00710.1	BR-signaling kinase 3 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33297.1.A1_at	B	B1S	POPTR_0001s30750	POPTR_0001s30750 (1:124)	scaffold_1:29220904-29221418(-) (10)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os02g09480.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g016440.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33328.2.A1_at	B	B1S	POPTR_0010s21440	POPTR_0010s21440 (8:377)	scaffold_10:18720853-18721302(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g005290.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33429.1.S1_at	B	B1S	POPTR_0010s09290	POPTR_0010s09290 (4:417)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33509.2.S1_at	B	B1S	POPTR_0003s15520	POPTR_0003s15520 (8:473)	NA	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G44680.1	DNA glycosylase superfamily protein 	LOC_Os01g58550.1	"methyladenine glycosylase, putative, expressed"	Medtr2g085500.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.3352.1.A1_at	B	B1S	POPTR_0009s01460	POPTR_0009s01460 (7:94)	NA	NA	Q8T1P1	Uncharacterized protein DDB_G0273453/DDB_G0273565	AT5G60760.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g39870.1	"2-phosphoglycerate kinase-related, putative, expressed"	AC235487_44.1	"2-phosphoglycerate kinase-related, putative AC235487.1 210241-205859 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3352.1.A1_x_at	B	B1S	POPTR_0009s01460	POPTR_0009s01460 (6:126)	NA	NA	Q8T1P1	Uncharacterized protein DDB_G0273453/DDB_G0273565	AT5G60760.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g39870.1	"2-phosphoglycerate kinase-related, putative, expressed"	AC235487_44.1	"2-phosphoglycerate kinase-related, putative AC235487.1 210241-205859 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33553.1.S1_at	B	B1S	POPTR_0002s23710	POPTR_0002s23710 (6:3387)	NA	NA	NA	NA	AT3G23710.1	Tic22-like family protein 	LOC_Os07g19030.1	"tic22-like family domain containing protein, expressed"	Medtr3g147870.1	Tic22-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33566.2.S1_at	B	B1S	POPTR_0016s02440	POPTR_0016s02440 (7:331)	NA	NA	Q60668	Heterogeneous nuclear ribonucleoprotein D0	AT2G41060.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g16090.1	"RNA binding protein, putative, expressed"	Medtr7g104960.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.3369.1.S1_a_at	B	B1S	POPTR_0006s13080	POPTR_0006s13080 (7:330)	NA	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30760.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.33693.1.A1_at	B	B1S	POPTR_0014s05750	POPTR_0014s05750 (8:1766)	NA	NA	P28769	T-complex protein 1 subunit alpha	AT3G20050.1	T-complex protein 1 alpha subunit 	LOC_Os04g46620.1	"T-complex protein, putative, expressed"	Medtr4g136760.1	"T-complex protein 1, alpha subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.3370.1.S1_at	B	B1S	POPTR_0005s15110	POPTR_0005s15110 (8:496)	NA	NA	NA	NA	AT2G47485.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g093950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3371.1.S1_at	B	B1A	POPTR_0010s21140	POPTR_0010s21140 (5:514)	NA	NA	NA	NA	AT3G55420.1	unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g38470.2	expressed protein	Medtr7g027080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33712.1.S1_at	B	B1S	POPTR_0013s01280	POPTR_0013s01280 (8:494)	NA	NA	O81635	Kinesin-4	AT5G27000.1	kinesin 4 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.33716.1.S1_at	B	B1S	POPTR_0006s11870	POPTR_0006s11870 (7:188)	NA	NA	NA	NA	AT1G21200.1	sequence-specific DNA binding transcription factors 	LOC_Os11g06410.3	"homeodomain, putative, expressed"	Medtr1g073690.1	"Homeodomain-like, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33722.1.S1_at	B	B1S	POPTR_0009s05560	POPTR_0009s05560 (7:161)	NA	NA	NA	NA	NA	NA	LOC_Os01g16880.1	expressed protein	Medtr4g104360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33736.1.A1_at	B	B1S	POPTR_0010s26020	POPTR_0010s26020 (8:369)	NA	NA	Q00416	Helicase SEN1	AT1G16800.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g32180.1	conserved hypothetical protein	Medtr8g024410.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33775.1.S1_at	B	B1S	POPTR_0008s13590	POPTR_0008s13590 (0:218)	NA	NA	Q94AH8	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6"	AT1G68020.2	UDP-Glycosyltransferase / trehalose-phosphatase family protein 	LOC_Os09g23350.1	"trehalose synthase, putative, expressed"	Medtr4g156760.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.3380.1.S1_at	B	B1S	POPTR_0005s19130	POPTR_0005s19130 (8:519)	NA	NA	P94538	Uncharacterized tRNA/rRNA methyltransferase YsgA	AT4G38020.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os03g48050.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr8g079220.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.33801.1.S1_at	B	B1S	POPTR_0019s14080	POPTR_0019s14080 (2:94)	scaffold_19:14839723-14840188(+) (10)	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT4G28100.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g37156.1	expressed protein	Medtr2g102990.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3382.1.A1_at	B	B1S	POPTR_0014s00290	POPTR_0014s00290 (7:689)	NA	NA	Q2XWK0	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os09g38690.1	"transporter family protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.33827.1.S1_at	B	B1A	POPTR_0016s01830	POPTR_0016s01830 (4:397)	NA	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21750.1	UDP-glucosyl transferase 71B1 	LOC_Os07g32620.1	"anthocyanidin 5,3-O-glucosyltransferase, putative, expressed"	Medtr5g097770.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3384.3.S1_at	B	B1S	POPTR_0010s12020	POPTR_0010s12020 (7:263)	NA	NA	Q8LBH2	Putative clathrin assembly protein At2g01600	AT2G01600.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr2g042690.1	"Carbamoyl-phosphate synthase L chain, ATP-binding; ENTH/VHS; ANTH; "	NA	GO:0005543|phospholipid binding	NA
PtpAffx.33864.1.S1_at	B	B1S	POPTR_0017s13690	POPTR_0017s13690 (8:1171)	NA	NA	Q7ZVZ7	Abhydrolase domain-containing protein FAM108C1	AT3G30380.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g42730.1	"OsPOP14 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3387.1.S1_at	B	B1A	POPTR_0010s11420	POPTR_0010s11420 (8:639)	NA	NA	NA	NA	AT4G17720.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g50560.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g156510.1	RNA-binding region RNP-1 (RNA recognition motif); Aldo/keto reductase 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.3389.1.S1_at	B	B1S	POPTR_0010s10320	POPTR_0010s10320 (5:217)	NA	NA	Q9ZVH4	Cullin-3A	AT1G26830.1	cullin 3 	LOC_Os02g51180.1	"cullin, putative, expressed"	AC146568_13.1	Cullin; Winged helix repressor DNA-binding AC146568.11 77878-70908 E EGN_Mt090430 200	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.33976.1.S1_at	B	B1S	POPTR_0016s00610	POPTR_0016s00610 (4:387)	scaffold_16:206999-207498(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34027.1.S1_at	B	B1S	POPTR_0013s06940	POPTR_0013s06940 (5:149)	scaffold_13:5643026-5643419(+) (11)	NA	NA	NA	AT5G17620.1	CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g64920.1	"nuclear matrix protein 1, putative, expressed"	Medtr5g048890.1	Plant nuclear matrix 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34122.1.S1_at	B	B1S	POPTR_0008s01220	POPTR_0008s01220 (4:672)	NA	NA	NA	NA	AT3G11591.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr3g076800.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34170.1.S1_at	B	B1S	POPTR_0001s17970	POPTR_0001s17970 (6:54)	NA	NA	Q55E69	Protein SYS1 homolog	AT1G79990.1	structural molecules 	LOC_Os01g41040.1	"SCF apoptosis response protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34172.1.S1_at	B	B1S	POPTR_0008s09750	POPTR_0008s09750 (0:458)	NA	NA	Q94JW8	Squamosa promoter-binding-like protein 6	AT1G69170.1	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os09g32944.1	"OsSPL18 - SBP-box gene family member, expressed"	Medtr5g048960.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.3418.1.S1_at	B	B1S	POPTR_0009s00820	POPTR_0009s00820 (5:421)	scaffold_9:918189-924790(-) (10)	NA	Q67Y83	Serine carboxypeptidase-like 51	AT2G27920.1	serine carboxypeptidase-like 51 	LOC_Os08g44640.3	"OsSCP41 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g113720.2	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.34219.1.A1_at	B	B1S	POPTR_0009s04520	POPTR_0009s04520 (8:584)	scaffold_9:4851221-4851838(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34228.2.A1_at	B	B1S	POPTR_0010s24930	POPTR_0010s24930 (1:500)	NA	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr4g066990.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.3423.1.A1_at	B	B1S	POPTR_0006s03230	POPTR_0006s03230 (2:1628)	NA	NA	O22207	Ubiquitin carboxyl-terminal hydrolase 5	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.3430.2.S1_at	B	B1S	POPTR_0001s14480	POPTR_0001s14480 (7:511)	NA	NA	Q43621	"Glutathione reductase, cytosolic"	AT3G24170.3	glutathione-disulfide reductase 	LOC_Os02g56850.3	"glutathione reductase, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
PtpAffx.34306.1.S1_at	B	B1S	POPTR_0010s18410	POPTR_0010s18410 (5:163)	NA	NA	Q6PEI7	CTP synthase 1	AT3G12670.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr2g080630.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.34347.1.S1_at	B	B1S	POPTR_0017s07870	POPTR_0017s07870 (8:645)	NA	NA	O05413	Probable nitronate monooxygenase	AT5G64250.2	Aldolase-type TIM barrel family protein 	LOC_Os08g37874.1	"2-nitropropane dioxygenase family, putative, expressed"	Medtr3g092250.1	"Triosephosphate isomerase; 2-nitropropane dioxygenase, NPD "	GO:0055114|oxidation reduction	GO:0018580|2-nitropropane dioxygenase activity	NA
PtpAffx.34365.1.S1_at	B	B1S	POPTR_0004s00310	POPTR_0004s00310 (8:3709)	NA	NA	NA	NA	AT4G22320.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1). 	LOC_Os08g25080.1	expressed protein	Medtr2g029560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34388.1.A1_at	B	B2S	POPTR_0001s23440	POPTR_0001s23440 (7:152)//POPTR_0001s23460 (7:152)	scaffold_1:22803109-22803414(-) (10)	NA	A2SY66	Vicianin hydrolase (Fragment)	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39880.1	"Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed"	Medtr3g031570.1	"Glycoside hydrolase, family 1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34391.2.A1_at	B	B1S	POPTR_0001s17220	POPTR_0001s17220 (0:3)	NA	NA	O14111	C2 domain-containing protein C31G5.15	AT4G25970.1	phosphatidylserine decarboxylase 3 	LOC_Os01g72940.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr2g008340.1	C2; Calcium-binding EF-hand; Phosphatidylserine decarboxylase 	GO:0008654|phospholipid biosynthetic process	GO:0004609|phosphatidylserine decarboxylase activity	NA
PtpAffx.34396.1.S1_at	B	B1S	POPTR_0008s16880	POPTR_0008s16880 (3:100)	scaffold_8:11342179-11342403(-) (11)	NA	Q07970	Kinesin-1	AT4G14330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g56540.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g090250.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.34440.1.S1_at	B	B1S	POPTR_0002s04370	POPTR_0002s04370 (8:793)	NA	NA	Q54F15	Iron-sulfur protein NUBPL	AT4G19540.1	IND1(iron-sulfur protein required for NADH dehydrogenase)-like 	LOC_Os03g42880.1	"nucleotide-binding protein-like, putative, expressed"	Medtr6g102220.1	Mrp 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
PtpAffx.34454.1.A1_at	B	B1S	POPTR_0017s02730	POPTR_0017s02730 (6:410)	NA	NA	Q9T0D6	Pentatricopeptide repeat-containing protein At4g11690	AT4G11690.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g50690.1	"pentatricopeptide, putative, expressed"	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34463.1.S1_at	B	B1S	POPTR_0001s25010	POPTR_0001s25010 (3:106)	NA	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G46620.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3449.2.S1_at	B	B1S	POPTR_0019s02520	POPTR_0019s02520 (3:318)	NA	NA	Q5ZJH6	Serine/threonine-protein kinase ULK3	AT1G49180.2	protein kinase family protein 	LOC_Os04g58990.1	"CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g144060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.34524.2.S1_at	B	B1S	POPTR_0002s11550	POPTR_0002s11550 (2:272)	NA	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g56050.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.3455.1.S1_at	B	B1S	POPTR_0006s28670	POPTR_0006s28670 (1:31)	scaffold_6:26294390-26294828(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34571.1.S1_at	B	B1S	POPTR_0008s06610	POPTR_0008s06610 (6:325)	NA	NA	NA	NA	AT2G40000.1	ortholog of sugar beet HS1 PRO-1 2 	LOC_Os01g63690.1	"hs1, putative, expressed"	Medtr3g093280.1	"Hs1pro-1, C-terminal; Hs1pro-1, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34597.1.S1_s_at	B	B1S	POPTR_0003s14970	POPTR_0003s14970 (6:452)	scaffold_3:14880966-14881571(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g47030.1	"receptor protein kinase, putative"	AC233576_1.1	Protein kinase; AC233576.2 1048-3881 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.3463.1.A1_at	B	B1S	POPTR_0021s00930	POPTR_0021s00930 (4:199)	scaffold_21:561408-561837(+) (10)	NA	NA	NA	AT4G21890.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g29770.2	"zinc finger protein, putative, expressed"	Medtr5g037560.1	"zinc finger family protein, putative "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.34653.1.S1_at	B	B1S	POPTR_0019s01790	POPTR_0019s01790 (4:466)	NA	NA	NA	NA	AT5G09850.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os12g06850.1	"transcription elongation factor protein, putative, expressed"	Medtr3g144310.1	"Transcription factors TFIIS, elongin A, CRSP70, conserved "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.3469.1.S1_at	B	B1S	POPTR_0007s09670	POPTR_0007s09670 (4:242)	NA	NA	NA	NA	AT3G51290.2	Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) 	LOC_Os09g36760.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g022440.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34706.1.S1_a_at	B	B1S	POPTR_0007s13660	POPTR_0007s13660 (0:13)	scaffold_7:13687837-13687995(+) (11)	NA	P23706	Floral homeotic protein DEFICIENS	AT3G54340.1	K-box region and MADS-box transcription factor family protein  	LOC_Os06g49840.2	"OsMADS16 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g021220.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.3473.1.A1_at	B	B1S	POPTR_0005s10470	POPTR_0005s10470 (8:263)	NA	NA	NA	NA	AT2G17550.1	unknown protein; Has 264 Blast hits to 258 proteins in 65 species: Archae - 5; Bacteria - 5; Metazoa - 66; Fungi - 16; Plants - 107; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os03g03860.3	expressed protein	Medtr5g024230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3479.1.S1_at	B	B1S	POPTR_0013s05120	POPTR_0013s05120 (5:163)	NA	NA	Q96LT9	RNA-binding protein 40	AT1G09230.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g21020.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g100170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.3480.1.A1_at	B	B1A	POPTR_0013s15620	POPTR_0013s15620 (7:395)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3482.1.S1_at	B	B1S	POPTR_0008s01830	POPTR_0008s01830 (4:89)	NA	NA	Q0WMY5	"Pentatricopeptide repeat-containing protein At5g04810, chloroplastic"	AT5G04810.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os04g58780.1	"pentatricopeptide repeat protein, putative, expressed"	Medtr6g089570.1	"TonB box, N-terminal "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.34854.1.S1_at	B	B1S	POPTR_0001s28170	POPTR_0001s28170 (6:418)	NA	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT5G13530.1	protein kinases;ubiquitin-protein ligases 	LOC_Os05g32570.1	"RING E3 ligase protein, putative, expressed"	Medtr3g005710.1	"KEG ; protein binding, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.34858.1.S1_at	B	B1S	POPTR_0007s07670	POPTR_0007s07670 (6:496)	NA	NA	NA	NA	AT5G23240.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os04g57880.1	"heat shock protein DnaJ, putative, expressed"	Medtr1g046220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.34912.1.S1_at	B	B1S	POPTR_0002s23610	POPTR_0002s23610 (0:14)	scaffold_2:21143137-21143328(-) (10)	NA	Q91VC0	dCTP pyrophosphatase 1	AT3G25400.1	"CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). "	LOC_Os02g27810.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	Medtr7g046000.1	MazG nucleotide pyrophosphohydrolase; Pyrophosphohydrolase MazG RS21-C6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.34917.1.S1_at	B	B1S	POPTR_0001s06070	POPTR_0001s06070 (7:635)	NA	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os01g58640.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr4g045140.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.34922.1.S1_at	B	B1S	POPTR_0014s17080	POPTR_0014s17080 (8:121)	NA	NA	Q15034	Probable E3 ubiquitin-protein ligase HERC3	AT5G48330.2	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os02g10380.1	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr5g020520.1	"Probable E3 ubiquitin-protein ligase HERC2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3497.1.A1_at	B	B1S	POPTR_0010s21600	POPTR_0010s21600 (8:512)	NA	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.3504.1.A1_at	B	B1S	POPTR_0001s00630	POPTR_0001s00630 (6:214)	NA	NA	Q58CV5	Sugar phosphate exchanger 2	AT3G47420.1	phosphate starvation-induced gene 3 	LOC_Os04g46880.2	"transporter, major facilitator family, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3506.1.S1_at	B	B1S	POPTR_0008s11970	POPTR_0008s11970 (7:326)	scaffold_8:7709587-7710014(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3509.1.S1_at	B	B1S	POPTR_0013s02320	POPTR_0013s02320 (1:139)	NA	NA	O60673	DNA polymerase zeta catalytic subunit	AT1G67500.2	recovery protein 3 	LOC_Os11g08330.1	"POLD1 - Putative DNA polymerase delta catalytic subunit, expressed"	Medtr7g139140.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.3511.1.S1_at	B	B1S	POPTR_0002s24040	POPTR_0002s24040 (4:410)	NA	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G12850.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g15040.2	"FAR1 family protein, expressed"	Medtr7g046760.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3513.1.A1_at	B	B1S	POPTR_0009s07980	POPTR_0009s07980 (5:453)	NA	NA	Q642R9	Rab3 GTPase-activating protein catalytic subunit	AT5G58510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g18440.1	expressed protein	Medtr5g100640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35137.1.S1_at	B	B1S	POPTR_0009s01560	POPTR_0009s01560 (4:674)	NA	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT2G28250.2	Protein kinase superfamily protein 	LOC_Os02g02040.1	"protein kinase, putative, expressed"	AC233683_8.1	"Serine/threonine protein kinase, active site AC233683.2 51421-47673 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35144.2.S1_a_at	B	B1S	POPTR_0010s10080	POPTR_0010s10080 (6:533)	NA	NA	Q8GYM6	Cyclin-T1-4	AT4G19600.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr1g132790.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35198.1.S1_at	B	B1S	POPTR_0004s04810	POPTR_0004s04810 (8:408)	NA	NA	NA	NA	AT1G28410.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.2); Has 425 Blast hits to 402 proteins in 77 species: Archae - 4; Bacteria - 22; Metazoa - 249; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). 	LOC_Os02g20270.1	expressed protein	Medtr2g017960.1	"F3M18.15, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35215.1.S1_at	B	B1S	POPTR_0015s08340	POPTR_0015s08340 (7:290)	NA	NA	Q8W485	"Uncharacterized protein At5g50100, mitochondrial"	AT5G50100.1	Putative thiol-disulphide oxidoreductase DCC 	LOC_Os04g57310.1	"thiol-disulphide oxidoreductase DCC, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35227.1.S1_at	B	B1S	POPTR_0007s06160	POPTR_0007s06160 (8:288)	NA	NA	NA	NA	AT2G22120.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os11g39130.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g100910.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3524.1.A1_at	B	B1S	POPTR_0018s01560	POPTR_0018s01560 (1:36)	NA	NA	P29518	"Protein brittle-1, chloroplastic/amyloplastic"	AT4G32400.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40050.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g136730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3528.2.S1_at	B	B1S	POPTR_0005s23500	POPTR_0005s23500 (6:1969)	NA	NA	Q42777	"Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial"	AT1G03090.2	"methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) "	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr1g083990.1	Pyruvate carboxylase; 	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.35283.1.S1_at	B	B1S	POPTR_0018s12400	POPTR_0018s12400 (7:383)	NA	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	NA	NA	Medtr8g122360.1	"CTV.15, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35301.1.S1_at	B	B1S	POPTR_0007s03940	POPTR_0007s03940 (3:210)	NA	NA	NA	NA	AT5G48920.1	tracheary element differentiation-related 7 	NA	NA	Medtr1g009760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3531.1.S1_at	B	B1S	POPTR_0011s10520	POPTR_0011s10520 (8:519)	NA	NA	Q9LJF8	F-box/LRR-repeat protein At3g26922	AT3G26922.1	F-box/RNI-like superfamily protein 	LOC_Os10g03870.1	"OsFBX353 - F-box domain containing protein, expressed"	Medtr3g026410.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35314.1.S1_at	B	B1S	POPTR_0013s11970	POPTR_0013s11970 (4:254)	NA	NA	A1L1L3	Tyrosine-protein phosphatase non-receptor type 20	AT1G71860.3	protein tyrosine phosphatase 1 	LOC_Os12g07590.2	"Protein-tyrosine phosphatase domain containing protein, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0004725|protein tyrosine phosphatase activity	NA
PtpAffx.35327.1.A1_at	B	B1S	POPTR_0012s04020	POPTR_0012s04020 (5:633)	NA	NA	P25889	Uncharacterized protein yeiA	AT3G17810.1	pyrimidine 1 	LOC_Os02g50350.1	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr6g080670.1	Dihydroorotate dehydrogenase 1; Dihydroorotate oxidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35332.1.S1_at	B	B1S	POPTR_0015s09140	POPTR_0015s09140 (0:1213)	NA	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT4G19180.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os10g21000.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g025310.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.3536.1.S1_at	B	B1S	POPTR_0014s10660	POPTR_0014s10660 (8:242)	NA	NA	NA	NA	AT2G46940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits to 141 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g18220.1	expressed protein	Medtr7g134270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35389.1.A1_at	B	B1S	POPTR_0001s21780	POPTR_0001s21780 (8:357)	NA	NA	NA	NA	AT1G71240.2	Plant protein of unknown function (DUF639) 	LOC_Os01g64870.1	expressed protein	Medtr2g007450.1	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35394.1.S1_at	B	B1S	POPTR_0006s07650	POPTR_0006s07650 (7:302)	NA	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.35411.1.S1_at	B	B1S	POPTR_0993s00200	POPTR_0993s00200 (0:334)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35438.1.S1_s_at	B	B1S	POPTR_0001s33270	POPTR_0001s33270 (7:351)	NA	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.35452.1.S1_at	B	B1S	POPTR_0015s12820	POPTR_0015s12820 (8:478)	NA	NA	Q94AI4	Methyltransferase-like protein 1	AT4G09980.1	Methyltransferase MT-A70 family protein 	LOC_Os10g31030.1	"EMB1691, putative, expressed"	Medtr1g126680.1	N-6 Adenine-specific DNA methylase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008168|methyltransferase activity	NA
PtpAffx.35466.1.S1_at	B	B1S	POPTR_0006s12680	POPTR_0006s12680 (7:722)	NA	NA	A5VFP2	Acylphosphatase	AT5G03370.1	acylphosphatase family 	LOC_Os06g15390.1	"acylphosphatase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35467.3.A1_at	B	B1S	POPTR_0004s15150	POPTR_0004s15150 (8:732)	NA	NA	Q6NXE6	Armadillo repeat-containing protein 6	AT4G33945.1	ARM repeat superfamily protein 	LOC_Os02g52370.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35483.1.A1_at	B	B1S	POPTR_0017s14110	POPTR_0017s14110 (0:124)	NA	NA	Q8K4H1	Probable arylformamidase	AT5G15860.1	prenylcysteine methylesterase 	LOC_Os05g50170.2	"ATPCME, putative, expressed"	AC233657_30.1	"Carboxylesterase, type B AC233657.1 159050-155204 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35494.1.A1_at	B	B1S	POPTR_0005s08370	POPTR_0005s08370 (3:518)	NA	NA	Q39237	Transcription factor TGA1	AT5G65210.5	bZIP transcription factor family protein 	LOC_Os04g54474.3	"transcription factor, putative, expressed"	Medtr3g100900.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.35497.1.S1_at	B	B1S	POPTR_0002s17520	POPTR_0002s17520 (8:568)	NA	NA	O23086	Aluminum-activated malate transporter 10	AT4G00910.1	Aluminium activated malate transporter family protein 	LOC_Os02g45160.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105090.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35502.1.A1_at	B	B1S	POPTR_0007s02900	POPTR_0007s02900 (8:516)	NA	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT3G22104.1	Phototropic-responsive NPH3 family protein 	LOC_Os07g36230.1	"BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g010960.1	NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.35503.1.S1_at	B	B1S	POPTR_0010s16210	POPTR_0010s16210 (7:490)	NA	NA	Q9Y5A9	YTH domain family protein 2	AT1G48110.2	evolutionarily conserved C-terminal region 7 	LOC_Os03g20180.2	"ECT protein, putative, expressed"	Medtr8g134440.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3551.1.S1_a_at	B	B1S	POPTR_0014s10940	POPTR_0014s10940 (7:113)	scaffold_14:8162140-8162550(+) (11)	NA	NA	NA	AT3G17450.1	hAT dimerisation domain-containing protein 	LOC_Os09g32380.1	"transposon protein, putative, unclassified, expressed"	Medtr2g052950.1	Protein of unknown function DUF659 	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.3551.2.S1_a_at	B	B1S	POPTR_0014s10940	POPTR_0014s10940 (8:117)	NA	NA	NA	NA	AT3G17450.1	hAT dimerisation domain-containing protein 	LOC_Os09g32380.1	"transposon protein, putative, unclassified, expressed"	Medtr2g052950.1	Protein of unknown function DUF659 	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.35513.1.S1_at	B	B1S	POPTR_0014s17830	POPTR_0014s17830 (4:162)	scaffold_14:14189557-14189924(-) (11)	NA	Q9M1C7	ABC transporter C family member 9	AT3G60160.1	multidrug resistance-associated protein 9 	LOC_Os04g49900.1	"ABC transporter family protein, putative, expressed"	Medtr5g034390.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.35521.1.A1_at	B	B1S	POPTR_0034s00270	POPTR_0034s00270 (7:233)	NA	NA	NA	NA	AT4G23010.1	UDP-galactose transporter 2 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35523.1.S1_at	B	B1S	POPTR_0004s02580	POPTR_0004s02580 (8:293)	NA	NA	NA	NA	AT1G11380.1	PLAC8 family protein 	LOC_Os07g36820.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g124650.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35526.1.S1_at	B	B1S	POPTR_0006s19920	POPTR_0006s19920 (8:502)	scaffold_6:18926703-18927335(-) (11)	NA	P46312	"Omega-6 fatty acid desaturase, chloroplastic"	AT4G30950.1	fatty acid desaturase 6 	LOC_Os08g34220.1	"omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr8g145530.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.35537.1.S1_at	B	B1S	POPTR_0001s25140	POPTR_0001s25140 (8:387)	NA	NA	Q5ZMJ9	Serine/arginine repetitive matrix protein 1	AT2G29210.1	splicing factor PWI domain-containing protein 	LOC_Os03g16369.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g084280.1	Splicing factor PWI 	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	NA
PtpAffx.35545.1.S1_at	B	B1S	POPTR_0001s17740	POPTR_0001s17740 (3:245)	NA	NA	Q9ZQE5	Pentatricopeptide repeat-containing protein At2g15690	AT2G15690.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g09530.2	"pentatricopeptide, putative, expressed"	Medtr4g129600.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35549.1.A1_at	B	B1S	POPTR_0016s03110	POPTR_0016s03110 (1:401)	NA	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G65600.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os08g02996.1	"receptor-like kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35551.1.A1_at	B	B1S	POPTR_0007s06940	POPTR_0007s06940 (7:306)	NA	NA	Q8L899	Systemin receptor SR160	AT4G39400.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os01g52050.1	"systemin receptor SR160 precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.35552.1.A1_at	B	B1S	POPTR_0003s17850	POPTR_0003s17850 (7:1145)	NA	NA	P52948	Nuclear pore complex protein Nup98-Nup96	AT1G80680.1	SUPPRESSOR OF AUXIN RESISTANCE 3 	LOC_Os03g07580.1	"OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed"	Medtr5g105600.1	"Peptidase S59, nucleoporin "	GO:0006810|transport	NA	GO:0005643|nuclear pore
PtpAffx.3558.1.S1_a_at	B	B5S	POPTR_0013s03060	POPTR_0030s00530 (7:134)//POPTR_0013s03490 (8:133)//POPTR_0013s03060 (8:133)//POPTR_0030s00520 (8:133)//POPTR_0013s03520 (8:133)	NA	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093150.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.3558.4.S1_at	B	B7S	POPTR_0013s03060	POPTR_0013s03520 (0:511)//POPTR_0013s03060 (1:468)//POPTR_0030s00520 (1:468)//POPTR_0013s03490 (1:457)//POPTR_0013s03541 (1:454)//POPTR_0013s03550 (1:454)//POPTR_0030s00530 (1:283)	NA	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093150.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.35585.1.A1_at	B	B1S	POPTR_0003s12750	POPTR_0003s12750 (7:1666)	NA	NA	NA	NA	AT4G11560.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g34330.1	"BAH domain containing protein, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding	NA
PtpAffx.35587.1.A1_at	B	B2S	POPTR_0012s10770	POPTR_0015s11640 (0:295)//POPTR_0012s10770 (0:273)	NA	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
PtpAffx.3559.1.S1_at	B	B2S	POPTR_2108s00210	POPTR_2108s00210 (7:491)//POPTR_0017s05900 (4:278)	scaffold_17:4576635-4577155(+) (9)	NA	Q9LX31	"Tetrapyrrole-binding protein, chloroplastic"	AT3G59400.1	enzyme binding;tetrapyrrole binding 	LOC_Os11g16550.1	"uncharacterized protein ycf53, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35618.1.A1_at	B	B1S	POPTR_0012s09960	POPTR_0012s09960 (3:96)	scaffold_12:10841693-10841970(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.3566.1.S1_at	B	B1S	POPTR_0001s12570	POPTR_0001s12570 (6:1577)	NA	NA	P43333	U2 small nuclear ribonucleoprotein A'	AT1G09760.1	U2 small nuclear ribonucleoprotein A 	LOC_Os02g13990.1	"U2 small nuclear ribonucleoprotein A, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.3566.2.S1_at	B	B1S	POPTR_0381s00210	POPTR_0381s00210 (7:3284)	NA	NA	P43333	U2 small nuclear ribonucleoprotein A'	AT1G09760.1	U2 small nuclear ribonucleoprotein A 	LOC_Os02g13990.1	"U2 small nuclear ribonucleoprotein A, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
PtpAffx.3567.1.S1_at	B	B1S	POPTR_0001s40490	POPTR_0001s40490 (8:197)	NA	NA	Q9NQQ7	Solute carrier family 35 member C2	AT3G14410.1	Nucleotide/sugar transporter family protein 	LOC_Os08g04110.1	"transporter, putative, expressed"	Medtr7g133820.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35685.1.A1_at	B	B1S	POPTR_0001s06400	POPTR_0001s06400 (8:384)	NA	NA	Q8GWZ6	Protein SENSITIVITY TO RED LIGHT REDUCED 1	AT5G59560.2	sensitivity to red light reduced protein (SRR1) 	LOC_Os05g02690.1	"sensitivity to red light reduced protein 1, putative, expressed"	Medtr3g020100.1	SRR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3569.1.S1_at	B	B1S	POPTR_0005s14390	POPTR_0005s14390 (6:256)	NA	NA	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT5G37790.1	Protein kinase superfamily protein 	LOC_Os03g13820.1	"protein kinase family protein, putative, expressed"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.35738.1.A1_at	B	B1S	POPTR_0002s02220	POPTR_0002s02220 (6:84)	NA	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022060.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.35739.1.S1_at	B	B1S	POPTR_0003s07910	POPTR_0003s07910 (3:290)	NA	NA	O80337	Ethylene-responsive transcription factor 1A	AT4G17500.1	ethylene responsive element binding factor 1 	LOC_Os02g43790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr8g105160.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.35761.1.A1_at	B	B1S	POPTR_0545s00210	POPTR_0545s00210 (6:287)	scaffold_545:6440-6849(+) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21750.1	UDP-glucosyl transferase 71B1 	LOC_Os07g32010.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g097770.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35803.1.A1_at	B	B1S	POPTR_0005s25760	POPTR_0005s25760 (8:162)	NA	NA	Q56XU4	Zinc finger CCCH domain-containing protein 6	AT1G19860.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os04g56750.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr1g024110.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.3585.1.S1_at	B	B1S	POPTR_0011s11460	POPTR_0011s11460 (8:519)	NA	NA	P44331	Ribokinase	AT1G17160.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g47550.1	"kinase, pfkB family, putative, expressed"	AC235677_13.1	"Carbohydrate kinase, PfkB AC235677.1 50409-46882 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36024.1.S1_at	B	B1S	POPTR_0010s08090	POPTR_0010s08090 (7:1031)	scaffold_10:9021334-9022574(-) (11)	NA	NA	NA	AT5G43310.2	COP1-interacting protein-related 	LOC_Os03g64320.1	expressed protein	Medtr1g090340.1	"COP1-interacting protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36103.2.S1_at	B	B1S	POPTR_0006s01180	POPTR_0006s01180 (1:285)	NA	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.36261.3.S1_at	B	B1S	POPTR_0002s00640	POPTR_0002s00640 (8:496)	NA	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT3G57710.1	Protein kinase superfamily protein 	LOC_Os04g51050.2	"OsWAK53b - OsWAK receptor-like protein kinase, expressed"	Medtr7g089090.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36360.1.A1_at	B	B1S	POPTR_0003s16470	POPTR_0003s16470 (8:1257)	scaffold_3:16057690-16058947(-) (11)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g33510.2	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g005100.1	"Uncharacterized protein At2g33490, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3646.1.A1_at	B	B1S	POPTR_0012s13880	POPTR_0012s13880 (7:324)	NA	NA	Q9FJ90	Ethylene-responsive transcription factor ERF025	AT5G52020.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g45420.1	"AP2 domain containing protein, expressed"	Medtr1g129460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.36601.1.S1_at	B	B1S	POPTR_0011s16030	POPTR_0011s16030 (6:257)	NA	NA	Q3UKJ7	WD40 repeat-containing protein SMU1	AT1G73720.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g21940.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g068820.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36619.1.S1_at	B	B1S	POPTR_0004s05950	POPTR_0004s05950 (7:563)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g135600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3669.1.A1_at	B	B1S	POPTR_0015s10770	POPTR_0015s10770 (8:301)	NA	NA	Q8L9A0	"50S ribosomal protein L21, mitochondrial"	AT4G30930.1	Ribosomal protein L21 	LOC_Os05g48410.1	"50S ribosomal protein L21, chloroplast precursor, putative, expressed"	AC235094_7.1	Ribosomal protein L21 AC235094.1 33114-37272 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.36775.1.A1_at	B	B1S	POPTR_0011s12680	POPTR_0011s12680 (0:144)	NA	NA	P27489	"Chlorophyll a-b binding protein 13, chloroplastic"	AT5G54270.1	light-harvesting chlorophyll B-binding protein 3 	LOC_Os07g37550.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g095410.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.36788.2.S1_at	B	B1S	POPTR_0007s13370	POPTR_0007s13370 (7:369)	NA	NA	Q39027	Mitogen-activated protein kinase 7	AT2G18170.1	MAP kinase 7 	LOC_Os06g48590.2	"CGMC_MAPKCMGC_2_SLT2y_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g134400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.36811.1.A1_at	B	B1S	POPTR_0017s14200	POPTR_0017s14200 (5:262)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36907.1.A1_at	B	B1S	POPTR_0006s11400	POPTR_0006s11400 (1:385)	NA	NA	P35493	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase"	AT3G08590.2	"Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "	LOC_Os01g60190.2	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed"	Medtr7g081000.1	"Alkaline phosphatase; Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "	GO:0044282|small molecule catabolic process||GO:0044275|cellular carbohydrate catabolic process||GO:0006007|glucose catabolic process||GO:0044281|small molecule metabolic process	GO:0004619|phosphoglycerate mutase activity||GO:0030145|manganese ion binding	GO:0005737|cytoplasm
PtpAffx.36910.1.A1_at	B	B1S	POPTR_0010s21900	POPTR_0010s21900 (8:328)	NA	NA	Q99685	Monoglyceride lipase	AT2G39420.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g16180.1	"lipase, putative, expressed"	Medtr1g108370.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36921.1.A1_at	B	B1S	POPTR_0002s08700	POPTR_0002s08700 (6:277)	NA	NA	O65238	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370	AT5G35370.1	S-locus lectin protein kinase family protein 	LOC_Os09g28180.1	"D-mannose binding lectin family protein, expressed"	Medtr3g097890.1	Protein kinase; Curculin-like (mannose-binding) lectin; N/apple PAN 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.36922.1.A1_at	B	B1S	POPTR_0019s12190	POPTR_0019s12190 (0:9)	scaffold_19:13308740-13309132(-) (11)	NA	P14314	Glucosidase 2 subunit beta	AT2G42390.1	"protein kinase C substrate, heavy chain-related "	LOC_Os01g16970.1	"glucosidase II beta subunit-like domain containing protein, expressed"	AC233675_14.1	"Glucosidase 2 subunit beta precursor, related AC233675.1 72073-74269 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36951.2.A1_at	B	B1S	POPTR_0015s07740	POPTR_0015s07740 (0:233)	NA	NA	Q9SSF8	Calcium-dependent protein kinase 30	AT1G74740.1	calcium-dependent protein kinase 30 	LOC_Os01g61590.1	"CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37010.3.A1_at	B	B1S	POPTR_0001s20450	POPTR_0001s20450 (3:315)	NA	NA	P42158	Casein kinase I isoform delta-like	AT1G72710.1	casein kinase 1-like protein 2 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr8g021280.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37079.1.A1_at	B	B1S	POPTR_0013s01840	POPTR_0013s01840 (5:529)	scaffold_13:1066278-1067000(-) (10)	NA	NA	NA	AT5G19090.3	Heavy metal transport/detoxification superfamily protein  	LOC_Os05g05820.1	"pro-resilin precursor, putative, expressed"	Medtr1g099830.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.37082.1.A1_at	B	B1S	POPTR_0002s03500	POPTR_0002s03500 (8:203)	NA	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G42800.1	dihydroflavonol 4-reductase 	LOC_Os01g44260.1	"dihydroflavonol-4-reductase, putative, expressed"	AC235668_6.1	"Dihydroflavonol-4-reductase, putative AC235668.1 19155-23405 E EGN_Mt090430 200"	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.37085.1.A1_at	B	B1S	POPTR_0005s09010	POPTR_0005s09010 (7:1266)	NA	NA	P93736	Valyl-tRNA synthetase	AT1G14610.1	valyl-tRNA synthetase / valine--tRNA ligase (VALRS) 	LOC_Os03g48850.2	"valyl-tRNA synthetase, putative, expressed"	Medtr1g129510.1	"Isoleucyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.37118.1.S1_at	B	B1S	POPTR_0005s07480	POPTR_0005s07480 (1:24)	scaffold_5:5106587-5106805(+) (11)	NA	NA	NA	AT5G10320.1	unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g37810.2	expressed protein	Medtr3g101930.1	"80A08_29, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37201.1.A1_at	B	B1S	POPTR_0003s04730	POPTR_0003s04730 (0:10)	scaffold_3:5725342-5725756(-) (10)	NA	Q4U0S5	RNA polymerase II-associated factor 1 homolog	AT1G79730.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os08g06070.1	"ELF7, putative, expressed"	Medtr8g015960.1	"RNA polymerase II associated, Paf1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37216.1.A1_at	B	B1S	POPTR_0001s10690	POPTR_0001s10690 (4:681)	NA	NA	NA	NA	AT1G64430.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os08g24390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37230.1.A1_at	B	B1S	POPTR_0004s22210	POPTR_0004s22210 (8:240)	NA	NA	Q8RUN2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1	AT2G28305.1	Putative lysine decarboxylase family protein 	LOC_Os04g43840.1	"possible lysine decarboxylase domain containing protein, expressed"	Medtr1g076860.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37232.1.S1_at	B	B1S	POPTR_0015s01560	POPTR_0015s01560 (0:116)	NA	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37242.1.A1_at	B	B1S	POPTR_0015s04110	POPTR_0015s04110 (0:78)	scaffold_15:4116941-4117248(-) (10)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT3G18210.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.2	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.37257.2.A1_at	B	B1S	POPTR_0005s16580	POPTR_0005s16580 (5:431)	NA	NA	NA	NA	AT1G22160.1	Protein of unknown function (DUF581) 	LOC_Os09g20240.1	"DUF581 domain containing protein, expressed"	CU651566_1.1	Protein of unknown function DUF581 CU651566.9 6700-5475 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37284.2.A1_at	B	B1S	POPTR_0001s05980	POPTR_0001s05980 (8:177)	NA	NA	NA	NA	AT4G31560.1	high chlorophyll fluorescence 153 	NA	NA	Medtr3g026180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37294.1.S1_at	B	B1S	POPTR_0005s27160	POPTR_0005s27160 (7:576)	NA	NA	Q8L844	"Pentatricopeptide repeat-containing protein At5g42310, mitochondrial"	AT5G42310.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g36390.1	"PPR repeat containing protein, expressed"	Medtr4g155160.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37301.1.A1_at	B	B1S	POPTR_0002s10340	POPTR_0002s10340 (0:86)	NA	NA	Q8N5D0	WD and tetratricopeptide repeats protein 1	AT5G10940.2	transducin family protein / WD-40 repeat family protein 	LOC_Os03g08830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g148940.1	WD40-like; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3734.1.A1_at	B	B1S	POPTR_0010s10860	POPTR_0010s10860 (4:183)	NA	NA	Q9C5U3	26S protease regulatory subunit 8 homolog A	AT5G19990.1	regulatory particle triple-A ATPase 6A 	LOC_Os02g11050.1	"26S protease regulatory subunit, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.37367.1.A1_at	B	B2A	POPTR_0015s09310	POPTR_0015s09310 (2:243)//POPTR_0015s09290 (1:242)	NA	NA	Q9LPV5	High affinity nitrate transporter 2.5	AT1G12940.1	nitrate transporter2.5 	LOC_Os01g50820.1	"transporter, major facilitator family, putative, expressed"	AC233663_16.1	"High affinity nitrate transporter, putative AC233663.2 118942-120870 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37392.1.A1_at	B	B1S	POPTR_0009s08900	POPTR_0009s08900 (8:270)	NA	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	NA	NA	NA	NA	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.37430.1.A1_at	B	B2S	POPTR_0003s22170	POPTR_0003s22170 (5:321)//POPTR_0108s00270 (5:303)	scaffold_108:61256-61652(+) (10)//scaffold_3:20057375-20064718(-) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37459.3.S1_at	B	B1S	POPTR_0005s24100	POPTR_0005s24100 (4:2153)	NA	NA	O04336	Probable WRKY transcription factor 21	AT2G30590.1	WRKY DNA-binding protein 21 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr1g010400.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.37466.1.S1_at	B	B1S	POPTR_0004s09440	POPTR_0004s09440 (1:70)	NA	NA	NA	NA	AT1G72690.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17490.1); Has 59 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g19910.1	expressed protein	Medtr8g021000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3747.2.A1_at	B	B1S	POPTR_0001s40390	POPTR_0001s40390 (8:334)	NA	NA	Q9LKA5	"Uncharacterized protein At3g15000, mitochondrial"	AT3G15000.1	cobalt ion binding 	LOC_Os09g33480.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3753.2.S1_at	B	B1S	POPTR_0006s03320	POPTR_0006s03320 (8:531)	scaffold_6:2111886-2114551(+) (11)	NA	NA	NA	AT3G56680.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr7g105960.1	Single-stranded nucleic acid binding R3H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37555.1.A1_at	B	B1S	POPTR_0010s01700	POPTR_0010s01700 (0:434)	NA	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
PtpAffx.37559.1.A1_at	B	B1S	POPTR_0010s05350	POPTR_0010s05350 (1:1627)	scaffold_10:6810055-6811852(+) (9)	NA	NA	NA	AT1G23360.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g42870.3	"methyltransferase domain containing protein, putative, expressed"	Medtr5g035030.1	UbiE/COQ5 methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3761.1.A1_x_at	B	B1S	POPTR_0008s09870	POPTR_0008s09870 (6:312)	NA	NA	A9PEK8	S-adenosylmethionine synthase 3	AT3G17390.1	S-adenosylmethionine synthetase family protein 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.37629.1.A1_at	B	B1S	POPTR_0009s11780	POPTR_0009s11780 (6:427)	NA	NA	Q8VY05	SWI/SNF complex subunit SWI3D	AT4G34430.3	DNA-binding family protein 	LOC_Os03g51220.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed"	Medtr4g095380.1	"Zinc finger, ZZ-type; SWIRM; Homeodomain-related "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.37640.1.A1_at	B	B1S	POPTR_0005s11280	POPTR_0005s11280 (7:91)	NA	NA	Q9EQH3	Vacuolar protein sorting-associated protein 35	AT2G17790.1	VPS35 homolog A 	LOC_Os03g58700.1	"vacuolar protein sorting-associated protein 35, putative, expressed"	Medtr5g022510.1	Vacuolar protein sorting-associated protein 35 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37646.1.S1_s_at	B	B1S	POPTR_0003s11280	POPTR_0003s11280 (2:377)	NA	NA	P49042	Vacuolar-processing enzyme	AT1G62710.1	beta vacuolar processing enzyme 	LOC_Os02g43010.1	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr8g106310.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.37703.1.A1_at	B	B1S	POPTR_0013s09650	POPTR_0013s09650 (1:84)	scaffold_13:9463980-9464271(-) (11)	NA	Q49640	Probable GTP pyrophosphokinase	AT3G14050.1	RELA/SPOT homolog 2 	LOC_Os02g47120.1	"region found in RelA/SpoT proteins containing protein, expressed"	Medtr5g007970.1	"ATP-dependent DNA ligase; Metal-dependent phosphohydrolase, HD region; TGS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37719.1.A1_at	B	B1S	POPTR_0008s19880	POPTR_0008s19880 (1:480)	NA	NA	NA	NA	AT1G27090.1	glycine-rich protein 	LOC_Os03g48260.1	expressed protein	Medtr5g038980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37722.1.A1_at	B	B1S	POPTR_0015s10570	POPTR_0015s10570 (8:416)	NA	NA	P54122	Ribonuclease J	AT5G63420.1	RNA-metabolising metallo-beta-lactamase family protein 	LOC_Os02g33610.1	"metallo-beta-lactamase, putative, expressed"	Medtr3g117450.1	"Myb, DNA-binding; Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37729.1.A1_at	B	B1S	POPTR_0012s11580	POPTR_0012s11580 (6:233)	scaffold_12:11946962-11947383(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37740.1.A1_at	B	B1S	POPTR_0013s07280	POPTR_0013s07280 (3:189)	scaffold_13:6055497-6055981(+) (10)	NA	Q9P6P3	Serine/threonine-protein kinase ppk15	AT5G35980.1	yeast YAK1-related gene 1 	LOC_Os02g47410.2	"protein kinase, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37754.1.A1_at	B	B1S	POPTR_0006s21550	POPTR_0006s21550 (1:24)	scaffold_6:20595640-20596113(-) (9)	NA	Q9C585	Ubiquitin carboxyl-terminal hydrolase 8	AT5G22030.1	ubiquitin-specific protease 8 	LOC_Os07g06610.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.378.2.S1_at	B	B1S	POPTR_0011s11390	POPTR_0011s11390 (7:117)	NA	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14420.2	Aldolase-type TIM barrel family protein 	LOC_Os03g57220.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.3785.2.S1_at	B	B1S	POPTR_0002s09810	POPTR_0002s09810 (5:228)	NA	NA	NA	NA	AT4G08940.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os09g29760.1	expressed protein	Medtr3g138900.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3787.1.A1_at	B	B1S	POPTR_0009s03440	POPTR_0009s03440 (8:1544)	scaffold_9:4054795-4056491(-) (9)	NA	Q9FY06	"Inner membrane protein PPF-1, chloroplastic"	AT2G28800.1	63 kDa inner membrane family protein 	LOC_Os01g05800.1	"inner membrane protein, putative, expressed"	Medtr3g102810.1	60 kDa inner membrane insertion protein 	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.37894.1.S1_at	B	B1S	POPTR_0010s04280	POPTR_0010s04280 (1:57)	scaffold_10:5297837-5300659(-) (10)	NA	NA	NA	AT3G17900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g05812.1	expressed protein	Medtr5g039480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37944.1.S1_at	B	B1S	POPTR_0012s13020	POPTR_0012s13020 (2:551)	NA	NA	Q94A51	U-box domain-containing protein 32	AT3G49060.1	U-box domain-containing protein kinase family protein 	LOC_Os09g39640.1	"protein kinase, putative, expressed"	Medtr1g126790.1	Tyrosine protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.37945.1.S1_at	B	B1S	POPTR_0013s07180	POPTR_0013s07180 (5:342)	scaffold_13:5894225-5897101(-) (10)	NA	NA	NA	AT5G17560.1	BolA-like family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37957.3.A1_at	B	B1S	POPTR_0018s12220	POPTR_0018s12220 (3:325)	NA	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G46920.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os06g08280.1	"protein kinase domain containing protein, expressed"	Medtr8g122640.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.37970.1.S1_at	B	B1S	POPTR_0001s30660	POPTR_0001s30660 (2:221)	scaffold_1:29131357-29131691(+) (9)	NA	Q1G3M2	UPF0631 protein At3g19508	AT3G19508.1	unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g24020.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37974.1.A1_at	B	B1S	POPTR_0008s22800	POPTR_0008s22800 (8:225)	NA	NA	Q80Z37	E3 ubiquitin-protein ligase Topors	AT2G39100.1	RING/U-box superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37991.1.S1_at	B	B1S	POPTR_0008s19020	POPTR_0008s19020 (3:137)	NA	NA	NA	NA	AT1G67910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). 	NA	NA	Medtr8g081780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38112.1.S1_at	B	B1S	POPTR_0014s02580	POPTR_0014s02580 (7:356)	NA	NA	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os02g15340.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.38113.1.A1_at	B	B1S	POPTR_0009s16210	POPTR_0009s16210 (0:483)	NA	NA	NA	NA	AT5G22340.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g20640.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38121.1.A1_at	B	B1S	POPTR_0004s14200	POPTR_0004s14200 (2:219)	NA	NA	Q6IDS6	E3 ubiquitin-protein ligase makorin	AT3G08505.1	zinc finger (CCCH-type/C3HC4-type RING finger) family protein 	LOC_Os06g21390.2	"Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed"	Medtr3g030250.1	"Zinc finger, CCCH-type; Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.38350.1.S1_at	B	B1S	POPTR_0001s41140	POPTR_0001s41140 (6:113)	NA	NA	Q68ED3	PAP-associated domain-containing protein 5	AT5G53770.1	Nucleotidyltransferase family protein 	LOC_Os01g48210.1	"PAP/25A associated domain containing protein, putative, expressed"	NA	NA	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.38391.1.A1_at	B	B1S	POPTR_0005s10570	POPTR_0005s10570 (8:292)	scaffold_5:7609620-7610012(+) (11)	NA	Q84W41	Glutamate receptor 3.6	AT3G51480.1	glutamate receptor 3.6 	LOC_Os02g02540.1	"glutamate receptor, putative, expressed"	Medtr8g087890.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.3847.2.A1_at	B	B1S	POPTR_0008s11730	POPTR_0008s11730 (8:417)	NA	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	AC233660_2.1	Armadillo-like helical AC233660.2 13161-17702 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38488.1.S1_at	B	B1S	POPTR_0014s16870	POPTR_0014s16870 (5:522)	NA	NA	Q9SSE5	Zinc finger protein CONSTANS-LIKE 9	AT3G07650.4	CONSTANS-like 9 	LOC_Os06g19444.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr3g106670.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.38634.1.S1_s_at	B	B1S	POPTR_0006s15790	POPTR_0006s15790 (5:450)	scaffold_6:13452492-13456022(+) (11)	NA	Q54S77	Probable serine/threonine-protein kinase vps15	AT4G29380.1	protein kinase family protein / WD-40 repeat family protein 	LOC_Os02g55340.1	"WD domain and HEAT domain containing protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.38812.1.S1_at	B	B1S	POPTR_0008s17220	POPTR_0008s17220 (7:379)	NA	NA	Q38831	Auxin-responsive protein IAA13	AT2G33310.3	auxin-induced protein 13 	LOC_Os02g57250.2	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr4g159330.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.38831.1.S1_at	B	B2S	POPTR_0001s00480	POPTR_0003s11020 (0:7)//POPTR_0001s00480 (0:7)	scaffold_1:388582-388847(+) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44370.1	"scarecrow, putative, expressed"	Medtr4g029280.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38937.1.S1_at	B	B1S	POPTR_0008s00260	POPTR_0008s00260 (5:308)	NA	NA	Q949Y3	Bifunctional purple acid phosphatase 26	AT5G34850.1	purple acid phosphatase 26 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38961.1.S1_at	B	B1S	POPTR_0011s14950	POPTR_0011s14950 (8:244)	scaffold_11:17175225-17175502(+) (10)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os08g40280.1	"lectin-like protein kinase, putative, expressed"	Medtr5g024990.1	Concanavalin A-like lectin/glucanase; Protein kinase-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.38964.1.S1_at	B	B1S	POPTR_0985s00200	POPTR_0985s00200 (5:115)	NA	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.38981.2.S1_at	B	B1S	POPTR_0001s12120	POPTR_0001s12120 (6:454)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38990.1.S1_a_at	B	B1S	POPTR_0008s13210	POPTR_0008s13210 (8:373)	scaffold_8:8657874-8658372(+) (11)	NA	Q9LQU4	Uncharacterized protein At1g14870	AT1G14870.1	PLANT CADMIUM RESISTANCE 2 	LOC_Os02g36940.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr5g017670.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39000.1.A1_at	B	B1S	POPTR_0019s05650	POPTR_0019s05650 (5:2419)	NA	NA	Q6MDI2	Polyribonucleotide nucleotidyltransferase	AT3G03710.1	"polyribonucleotide nucleotidyltransferase, putative "	LOC_Os07g07310.1	"polynucleotide phosphorylase, putative, expressed"	Medtr7g103420.1	Polyribonucleotide nucleotidyltransferase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.39031.1.S1_at	B	B1S	POPTR_0015s08330	POPTR_0015s08330 (5:160)	scaffold_15:9589448-9589745(+) (9)	NA	O48676	N-hydroxythioamide S-beta-glucosyltransferase	AT1G24100.1	UDP-glucosyl transferase 74B1 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g036700.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39055.2.S1_at	B	B1S	POPTR_0014s15030	POPTR_0014s15030 (8:430)	NA	NA	Q8GXJ4	Glutamate receptor 3.4	AT1G05200.2	glutamate receptor 3.4 	LOC_Os07g01310.1	"glutamate receptor, putative, expressed"	Medtr2g103920.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.39069.1.S1_at	B	B1S	POPTR_0013s13820	POPTR_0013s13820 (0:382)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39077.1.S1_at	B	B1S	POPTR_0001s46810	POPTR_0001s46810 (8:348)	NA	NA	Q2LAM0	Fatty acid 2-hydroxylase	AT2G34770.1	fatty acid hydroxylase 1 	LOC_Os03g56820.1	"fatty acid hydroxylase, putative, expressed"	AC147501_23.1	Fatty acid hydroxylase AC147501.9 90999-82625 E EGN_Mt090430 200	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.39117.1.S1_at	B	B1S	POPTR_0002s23310	POPTR_0002s23310 (8:3702)	NA	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT2G43080.1	P4H isoform 1 	LOC_Os04g27850.1	"oxidoreductase, putative, expressed"	Medtr1g147170.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.39119.1.S1_at	B	B1S	POPTR_0008s14950	POPTR_0008s14950 (3:231)	NA	NA	Q5KPA7	Vacuolar protein 8	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.39195.1.S1_at	B	B1S	POPTR_0014s15410	POPTR_0014s15410 (0:0)	scaffold_14:11473917-11474075(-) (9)	NA	O13067	Condensin complex subunit 2	AT2G32590.1	LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). 	LOC_Os01g34870.1	expressed protein	Medtr2g104510.1	Barren 	GO:0007067|mitosis	NA	GO:0005634|nucleus
PtpAffx.39212.2.S1_at	B	B1S	POPTR_0012s10260	POPTR_0012s10260 (0:1074)	NA	NA	Q8LFW6	Squamosa promoter-binding-like protein 13	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.39301.1.A1_at	B	B1S	POPTR_0007s14140	POPTR_0007s14140 (6:391)	NA	NA	P58223	KH domain-containing protein At4g18375	AT2G22600.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr5g033090.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.39302.1.A1_at	B	B1S	POPTR_0016s06180	POPTR_0016s06180 (5:69)	NA	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.39308.1.S1_at	B	B1S	POPTR_0012s14270	POPTR_0012s14270 (4:411)	NA	NA	NA	NA	AT4G22860.1	Cell cycle regulated microtubule associated protein 	LOC_Os06g03980.1	expressed protein	Medtr8g106490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39310.1.A1_at	B	B1S	POPTR_0003s15760	POPTR_0003s15760 (0:371)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39317.1.S1_at	B	B1S	POPTR_0002s15740	POPTR_0002s15740 (8:2020)	NA	NA	P37225	"NAD-dependent malic enzyme 59 kDa isoform, mitochondrial"	AT4G00570.1	NAD-dependent malic enzyme 2 	LOC_Os10g35960.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g034840.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.39326.1.S1_at	B	B1S	POPTR_0014s15380	POPTR_0014s15380 (8:368)	NA	NA	NA	NA	AT1G05070.1	Protein of unknown function (DUF1068) 	LOC_Os03g56610.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39331.1.S1_at	B	B1S	POPTR_0011s02460	POPTR_0011s02460 (8:1856)	NA	NA	Q67YS6	Putative ALA-interacting subunit 2	AT5G46150.1	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 	LOC_Os03g57170.3	"cell cycle control protein, putative, expressed"	Medtr7g102850.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.39341.1.S1_at	B	B3S	POPTR_0001s34040	POPTR_0001s34060 (8:388)//POPTR_0001s34050 (8:388)//POPTR_0001s34040 (8:388)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50160.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39413.1.S1_at	B	B1S	POPTR_0012s11920	POPTR_0012s11920 (4:149)	NA	NA	Q7XTS4	Protein argonaute 2	AT1G31280.1	Argonaute family protein 	LOC_Os04g52540.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g034460.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39415.1.S1_at	B	B1S	POPTR_0015s12150	POPTR_0015s12150 (7:377)	NA	NA	P42762	"ERD1 protein, chloroplastic"	AT5G51070.1	Clp ATPase 	LOC_Os02g32520.1	"ERD1 protein, chloroplast precursor, putative, expressed"	Medtr3g151610.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.39456.1.A1_at	B	B2A	POPTR_0017s13060	POPTR_0017s13060 (8:159)//POPTR_0004s11520 (1:151)	NA	NA	Q5VWG9	Transcription initiation factor TFIID subunit 3	AT3G02160.1	Bromodomain transcription factor 	LOC_Os12g38620.3	"bromodomain associated family protein, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39522.1.A1_at	B	B1S	POPTR_0015s01670	POPTR_0015s01670 (7:149)	NA	NA	Q8GZ42	Histone-lysine N-methyltransferase ATX5	AT5G53430.1	SET domain group 29 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39529.1.A1_at	B	B1S	POPTR_0005s22530	POPTR_0005s22530 (8:60)	NA	NA	NA	NA	AT3G59090.1	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os01g54784.1	expressed protein	Medtr4g165460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39530.1.A1_at	B	B1S	POPTR_0004s09680	POPTR_0004s09680 (5:205)	NA	NA	Q39208	Delta(7)-sterol-C5(6)-desaturase 1	AT3G02580.1	sterol 1 	LOC_Os01g04260.1	"fatty acid hydroxylase, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.39559.1.S1_at	B	B1S	POPTR_0006s23020	POPTR_0006s23020 (5:250)	NA	NA	NA	NA	AT3G53540.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). 	LOC_Os03g17210.1	expressed protein	Medtr5g045260.1	"Rad51, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39632.1.S1_at	B	B1S	POPTR_0003s04940	POPTR_0003s04940 (5:1251)	scaffold_3:6031620-6033051(-) (9)	NA	Q9D8Z1	Activating signal cointegrator 1 complex subunit 1	AT3G16230.3	Predicted eukaryotic LigT 	LOC_Os01g13100.1	"KH domain containing protein, putative, expressed"	Medtr2g122410.1	Appr>p cyclic nucleotide phosphodiesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39710.1.S1_at	B	B1S	POPTR_0008s15930	POPTR_0008s15930 (8:528)	NA	NA	NA	NA	AT3G55760.3	unknown protein; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2). 	LOC_Os11g37560.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.39717.1.S1_at	B	B1S	POPTR_0013s13490	POPTR_0013s13490 (4:134)	scaffold_13:13955322-13958351(-) (11)	NA	Q9ZT82	Callose synthase 12	AT4G03550.1	glucan synthase-like 5 	LOC_Os01g55040.1	"1,3-beta-glucan synthase component, putative, expressed"	Medtr4g107950.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.39726.1.S1_at	B	B1S	POPTR_0011s15230	POPTR_0011s15230 (4:172)	NA	NA	Q7GCL7	NAC domain-containing protein 74	AT1G33060.2	NAC 014 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr3g122340.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.39900.1.A1_at	B	B1S	POPTR_0003s13420	POPTR_0003s13420 (7:551)	NA	NA	P13240	Disease resistance response protein 206	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44250.1	"dirigent, putative, expressed"	AC234702_10.1	Plant disease resistance response protein AC234702.1 70293-71741 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4010.1.S1_at	B	B1S	POPTR_0009s16050	POPTR_0009s16050 (3:49)	NA	NA	NA	NA	AT2G27080.2	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g59680.1	"NHL25, putative, expressed"	Medtr5g094840.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.40138.1.A1_at	B	B1S	POPTR_0002s03930	POPTR_0002s03930 (8:409)	NA	NA	NA	NA	AT2G20515.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g43670.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40192.3.S1_at	B	B1S	POPTR_0017s08740	POPTR_0017s08740 (8:287)	NA	NA	NA	NA	AT1G12845.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40216.2.S1_at	B	B1S	POPTR_0012s13770	POPTR_0012s13770 (0:70)	NA	NA	NA	NA	AT4G25433.1	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g02685.1	"lysM domain containing protein, putative, expressed"	Medtr1g129580.1	Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.40255.1.S1_at	B	B1S	POPTR_0006s28540	POPTR_0006s28540 (6:517)	NA	NA	Q9SJA1	Ubiquitin carboxyl-terminal hydrolase 19	AT2G24640.1	ubiquitin-specific protease 19 	LOC_Os06g44380.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.40307.1.S1_at	B	B1A	POPTR_0009s02510	POPTR_0009s02510 (2:233)	scaffold_9:3259332-3259848(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40307.2.S1_at	B	B1S	POPTR_0009s02510	POPTR_0009s02510 (2:233)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40333.1.S1_at	B	B1S	POPTR_0008s02790	POPTR_0008s02790 (8:414)	scaffold_8:1420184-1420710(+) (9)	NA	P29136	Metalloendoproteinase 1	AT1G59970.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g037460.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.40353.1.A1_at	B	B1S	POPTR_0012s13280	POPTR_0012s13280 (4:627)	scaffold_12:13505231-13506216(-) (10)	NA	Q5RAI8	Cleavage and polyadenylation specificity factor subunit 5	AT4G25550.1	"Cleavage/polyadenylation specificity factor, 25kDa subunit "	LOC_Os04g58640.1	"cleavage and polyadenylation specificity factor subunit 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40357.1.S1_at	B	B1S	POPTR_0009s14090	POPTR_0009s14090 (6:347)	NA	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16990.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40498.1.S1_at	B	B1S	POPTR_0006s06420	POPTR_0006s06420 (4:480)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4058.1.S1_at	B	B1S	POPTR_0006s24200	POPTR_0006s24200 (8:534)	scaffold_6:22851366-22851900(+) (9)	NA	Q9JJA2	Conserved oligomeric Golgi complex subunit 8	AT5G11980.1	conserved oligomeric Golgi complex component-related / COG complex component-related 	LOC_Os12g35290.1	"conserved oligomeric Golgi complex component 8, putative, expressed"	Medtr8g088850.1	Dor1-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.40645.1.S1_at	B	B1S	POPTR_0013s11300	POPTR_0013s11300 (7:508)	NA	NA	Q8VHT7	Transcription factor IIIA	AT1G72050.2	transcription factor IIIA 	LOC_Os05g03020.1	"ZOS5-03 - C2H2 zinc finger protein, expressed"	Medtr3g005750.1	"Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.4077.1.S1_at	B	B1S	POPTR_0017s07650	POPTR_0017s07650 (8:559)	scaffold_17:5946003-5946870(-) (9)	NA	Q8LFY8	RING-H2 finger protein ATL54	AT4G33565.1	RING/U-box superfamily protein 	LOC_Os09g29370.1	"RING-H2 finger protein ATL5F, putative, expressed"	Medtr2g009360.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4079.1.A1_at	B	B1S	POPTR_0017s06360	POPTR_0017s06360 (8:433)	scaffold_17:4885094-4885562(+) (11)	NA	A4IHW3	Probable UDP-sugar transporter protein SLC35A4	AT3G59360.2	UDP-galactose transporter 6 	LOC_Os02g39200.1	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr1g146890.1	Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
PtpAffx.4085.6.A1_at	B	B1S	POPTR_0005s07740	POPTR_0005s07740 (6:85)	NA	NA	Q9XEE2	Annexin D2	AT5G65020.1	annexin 2 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.40865.1.S1_at	B	B1S	POPTR_0008s11280	POPTR_0008s11280 (4:257)	NA	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.40894.1.S1_at	B	B1S	POPTR_0004s20940	POPTR_0004s20940 (6:320)	NA	NA	Q6DIQ3	Protein phosphatase 1 regulatory subunit 7	AT5G22320.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g73560.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr2g107470.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.40894.2.A1_at	B	B1S	POPTR_0004s20940	POPTR_0004s20940 (7:423)	NA	NA	Q6DIQ3	Protein phosphatase 1 regulatory subunit 7	AT5G22320.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g73560.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr2g107470.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.40910.1.S1_at	B	B1S	POPTR_0018s02700	POPTR_0018s02700 (8:1926)	scaffold_18:2421967-2424075(-) (9)	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.40937.1.S1_at	B	B1S	POPTR_0001s26050	POPTR_0001s26050 (7:328)	NA	NA	Q9SR43	"Phytochromobilin:ferredoxin oxidoreductase, chloroplastic"	AT3G09150.2	"phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) "	LOC_Os01g72090.1	"phycoerythrobilin ferredoxin oxidoreductase, putative, expressed"	Medtr5g104730.1	Ferredoxin-dependent bilin reductase 	GO:0010024|phytochromobilin biosynthetic process||GO:0055114|oxidation reduction	"GO:0016636|""oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor""||GO:0050897|cobalt ion binding"	NA
PtpAffx.41014.1.S1_at	B	B1S	POPTR_0013s11390	POPTR_0013s11390 (7:381)	NA	NA	Q8BGE5	Fanconi anemia group M protein homolog	AT1G35530.2	DEAD/DEAH box RNA helicase family protein  	LOC_Os11g07870.1	"DEAD/DEAH box helicase domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.41030.1.A1_at	B	B1S	POPTR_0009s07950	POPTR_0009s07950 (7:176)	NA	NA	P93028	Ubiquitin-activating enzyme E1 1	AT2G30110.1	ubiquitin-activating enzyme 1 	LOC_Os11g01510.3	"ubiquitin-activating enzyme, putative, expressed"	Medtr5g080760.1	"Ubiquitin-activating enzyme, E1; Lipase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.41063.1.S1_at	B	B1S	POPTR_0017s08550	POPTR_0017s08550 (0:137)	NA	NA	NA	NA	NA	NA	LOC_Os03g63040.1	expressed protein	Medtr3g105200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41081.2.A1_at	B	B1S	POPTR_0010s16900	POPTR_0010s16900 (4:669)	NA	NA	NA	NA	AT2G03390.1	uvrB/uvrC motif-containing protein 	LOC_Os08g07540.1	"hemimethylated DNA binding domain containing protein, expressed"	Medtr5g046350.1	UvrB/UvrC protein; Hemimethylated DNA-binding region 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.4127.1.A1_at	B	B1S	POPTR_0004s11040	POPTR_0004s11040 (2:51)	NA	NA	Q9BWU0	Kanadaptin	AT5G38840.1	SMAD/FHA domain-containing protein  	LOC_Os06g16430.1	"FHA domain containing protein, putative, expressed"	Medtr7g015550.1	"forkhead-associated domain-containing protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41340.1.S1_at	B	B1S	POPTR_0006s18010	POPTR_0006s18010 (1:98)	scaffold_6:16345399-16348417(+) (10)	NA	NA	NA	AT2G18910.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr8g129280.1	"hydroxyproline-rich glycoprotein family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4140.1.S1_at	B	B1S	POPTR_0003s20970	POPTR_0003s20970 (8:452)	scaffold_3:19297071-19297571(+) (11)	NA	P74003	Protein methyltransferase hemK homolog	AT5G64150.1	RNA methyltransferase family protein 	LOC_Os12g41830.1	"Methyltransferase small domain containing protein, expressed"	AC235488_33.1	Modification methylase HemK; Methyltransferase small AC235488.1 154102-150229 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41415.1.A1_at	B	B1S	POPTR_0001s23360	POPTR_0001s23360 (6:455)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4150.1.A1_at	B	B1S	POPTR_0007s01680	POPTR_0007s01680 (8:389)	NA	NA	NA	NA	AT1G08760.1	Plant protein of unknown function (DUF936) 	LOC_Os08g42870.1	expressed protein	Medtr4g092550.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41539.1.S1_at	B	B1S	POPTR_0001s25170	POPTR_0001s25170 (6:128)	NA	NA	P50165	Tropinone reductase homolog	AT2G29260.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.41560.2.A1_at	B	B1S	POPTR_0002s12620	POPTR_0002s12620 (4:330)	NA	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os04g59330.1	expressed protein	Medtr4g155720.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.4158.1.S1_at	B	B2S	POPTR_0002s08880	POPTR_0005s16140 (6:538)//POPTR_0002s08880 (8:537)	NA	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT1G21980.1	phosphatidylinositol-4-phosphate 5-kinase 1 	LOC_Os03g49800.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr5g064960.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.41619.1.S1_at	B	B1S	POPTR_0014s18330	POPTR_0014s18330 (7:1074)	NA	NA	NA	NA	AT5G42765.1	"INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g56320.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41722.1.S1_at	B	B1S	POPTR_0012s01720	POPTR_0012s01720 (2:192)	scaffold_12:1300594-1301076(-) (10)	NA	O08309	Pyruvate kinase	AT3G49160.1	pyruvate kinase family protein 	LOC_Os03g46910.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41735.1.S1_at	B	B1S	POPTR_0017s06450	POPTR_0017s06450 (5:388)	NA	NA	P0CG84	Polyubiquitin (Fragment)	AT4G05320.6	polyubiquitin 10 	LOC_Os05g42424.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.2	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41755.1.S1_at	B	B1S	POPTR_0009s06990	POPTR_0009s06990 (6:497)	NA	NA	Q38813	"Chaperone protein dnaJ 1, mitochondrial"	AT5G48030.1	gametophytic factor 2 	LOC_Os12g07060.1	"chaperone protein dnaJ, putative, expressed"	Medtr3g030790.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.41842.1.S1_at	B	B1S	POPTR_0014s04330	POPTR_0014s04330 (8:327)	scaffold_14:3388789-3389254(+) (11)	NA	NA	NA	AT2G44600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60200.1); Has 56 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g46420.1	"transposon protein, putative, unclassified, expressed"	Medtr8g009140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41881.1.S1_at	B	B1S	POPTR_0001s01730	POPTR_0001s01730 (4:297)	NA	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011210.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.41908.1.S1_at	B	B1S	POPTR_0010s17970	POPTR_0010s17970 (5:178)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41946.1.A1_at	B	B1S	POPTR_0015s10810	POPTR_0015s10810 (0:362)	NA	NA	Q9BRS2	Serine/threonine-protein kinase RIO1	AT5G37350.1	Serine/threonine-protein kinase Rio1 	LOC_Os07g06820.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr7g107800.1	"Tyrosine protein kinase, active site "	NA	GO:0003824|catalytic activity||GO:0005524|ATP binding	NA
PtpAffx.41966.1.S1_at	B	B1A	POPTR_0007s09400	POPTR_0007s09400 (2:215)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41993.1.S1_at	B	B1S	POPTR_0009s01750	POPTR_0009s01750 (8:1405)	NA	NA	NA	NA	AT1G07980.1	"nuclear factor Y, subunit C10 "	LOC_Os03g63530.2	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr4g081490.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.41998.1.A1_at	B	B1S	POPTR_0003s10170	POPTR_0003s10170 (6:265)	scaffold_3:11268735-11269136(-) (10)	NA	Q6NY74	Replication protein A 70 kDa DNA-binding subunit	AT5G45400.1	Replication factor-A protein 1-related 	LOC_Os05g02040.1	"RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.42004.1.S1_at	B	B1S	POPTR_0009s12860	POPTR_0009s12860 (5:547)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42031.1.S1_at	B	B2S	POPTR_0014s02730	POPTR_0014s02730 (0:346)//POPTR_0014s02750 (0:204)	NA	NA	NA	NA	AT5G42930.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr5g017200.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.42072.1.S1_at	B	B1S	POPTR_0001s30310	POPTR_0001s30310 (6:290)	NA	NA	Q5I7K3	40S ribosomal protein S29	AT4G33865.1	Ribosomal protein S14p/S29e family protein 	LOC_Os12g32380.1	"40S ribosomal protein S29, putative, expressed"	Medtr5g005230.1	Ribosomal protein S14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.42078.1.A1_at	B	B1S	POPTR_0011s02040	POPTR_0011s02040 (4:287)	NA	NA	NA	NA	AT3G54070.1	Ankyrin repeat family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr2g025590.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42092.1.A1_at	B	B1S	POPTR_0010s05720	POPTR_0010s05720 (4:503)	NA	NA	NA	NA	AT1G67856.1	RING/U-box superfamily protein 	LOC_Os08g38460.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g102380.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42102.1.S1_at	B	B1S	POPTR_0001s09950	POPTR_0001s09950 (0:179)	NA	NA	NA	NA	AT1G64050.1	unknown protein; Has 524 Blast hits to 342 proteins in 101 species: Archae - 0; Bacteria - 106; Metazoa - 106; Fungi - 24; Plants - 25; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). 	LOC_Os02g16600.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42105.1.A1_at	B	B1S	POPTR_0001s22240	POPTR_0001s22240 (5:690)	NA	NA	Q04960	DnaJ protein homolog	AT3G44110.1	DNAJ homologue 3 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr2g104740.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.42109.1.S1_at	B	B1S	POPTR_0006s14330	POPTR_0006s14330 (4:477)	NA	NA	NA	NA	AT5G20635.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink). "	LOC_Os09g26999.1	"keratin-associated protein 5-4, putative, expressed"	Medtr8g132500.1	TNFR/CD27/30/40/95 cysteine-rich region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42125.1.A1_at	B	B1S	POPTR_0015s05760	POPTR_0015s05760 (6:546)	NA	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g49830.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.42126.1.A1_at	B	B1S	POPTR_0013s04530	POPTR_0013s04530 (2:477)	NA	NA	Q9SAK5	Myb family transcription factor APL	AT5G29000.2	Homeodomain-like superfamily protein 	LOC_Os03g21240.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42196.1.A1_at	B	B1S	POPTR_0001s24680	POPTR_0001s24680 (0:250)	NA	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT5G24318.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g114760.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.42229.1.A1_at	B	B1S	POPTR_0001s36300	POPTR_0001s36300 (8:546)	NA	NA	Q54GI9	"Prohibitin-1, mitochondrial"	AT5G40770.1	prohibitin 3 	LOC_Os02g37000.1	"mitochondrial prohibitin complex protein 1, putative, expressed"	Medtr3g009610.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42286.1.A1_at	B	B1S	POPTR_0002s13640	POPTR_0002s13640 (7:212)	NA	NA	NA	NA	AT2G44600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60200.1); Has 56 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g46420.1	"transposon protein, putative, unclassified, expressed"	Medtr8g009140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42296.1.A1_at	B	B1S	POPTR_0004s09140	POPTR_0004s09140 (5:212)	NA	NA	Q9UKZ1	UPF0760 protein C2orf29	AT5G18420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g13694.1	"AGAP007117-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42299.2.A1_at	B	B1S	POPTR_0002s03530	POPTR_0002s03530 (4:228)	scaffold_2:2199588-2199998(+) (9)	NA	O23712	Proteasome subunit alpha type-1-B	AT1G47250.1	20S proteasome alpha subunit F2 	LOC_Os02g04100.1	"peptidase, T1 family, putative, expressed"	Medtr4g008970.1	"20S proteasome, A and B subunits "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.42304.1.A1_at	B	B1S	POPTR_0016s14750	POPTR_0016s14750 (8:514)	NA	NA	NA	NA	AT3G08640.1	Protein of unknown function (DUF3411) 	LOC_Os01g59740.1	expressed protein	Medtr7g080630.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42317.1.A1_at	B	B1S	POPTR_0008s13510	POPTR_0008s13510 (8:235)	NA	NA	P49420	Aspartate-semialdehyde dehydrogenase	AT1G14810.1	semialdehyde dehydrogenase family protein 	LOC_Os03g55280.1	"semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed"	Medtr4g156590.1	"Aspartate-semialdehyde dehydrogenase, microbial "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016620|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0046983|protein dimerization activity"	GO:0005737|cytoplasm
PtpAffx.42338.1.A1_at	B	B1S	POPTR_0016s10860	POPTR_0016s10860 (8:960)	NA	NA	Q15428	Splicing factor 3A subunit 2	AT2G32600.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g15700.1	"splicing factor 3A subunit 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42589.1.A1_at	B	B1S	POPTR_0006s27930	POPTR_0006s27930 (7:701)	NA	NA	Q8C092	Transcription initiation factor TFIID subunit 5	AT5G25150.1	TBP-associated factor 5 	LOC_Os06g44030.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.42594.1.S1_at	B	B1S	POPTR_0019s08570	POPTR_0019s08570 (7:719)	NA	NA	O22874	Expansin-A8	AT2G40610.1	expansin A8 	LOC_Os01g60770.1	"expansin precursor, putative, expressed"	Medtr5g083140.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42652.1.S1_at	B	B1S	POPTR_0014s09210	POPTR_0014s09210 (3:2493)	scaffold_14:6852169-6854927(-) (11)	NA	Q8RVQ9	Histone H3-like centromeric protein HTR12	AT1G01370.2	Histone superfamily protein 	LOC_Os05g41080.2	"histone H3, putative, expressed"	Medtr8g101690.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.42787.1.S1_at	B	B1S	POPTR_0013s04290	POPTR_0013s04290 (7:370)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42822.1.A1_at	B	B1S	POPTR_0001s11800	POPTR_0001s11800 (7:330)	scaffold_1:9150551-9151019(+) (11)	NA	Q9LY05	Ethylene-responsive transcription factor ERF106	AT5G07580.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g46240.1	"AP2 domain containing protein, expressed"	Medtr1g112020.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.4285.1.A1_at	B	B1S	POPTR_0007s08420	POPTR_0007s08420 (6:313)	NA	NA	Q84TE6	NAC domain-containing protein 21/22	AT1G56010.2	NAC domain containing protein 1 	LOC_Os06g46270.1	"no apical meristem protein, putative, expressed"	Medtr2g076740.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.4285.2.S1_at	B	B1S	POPTR_0005s10100	POPTR_0005s10100 (8:489)	NA	NA	Q84TE6	NAC domain-containing protein 21/22	AT1G56010.1	NAC domain containing protein 1 	LOC_Os06g46270.1	"no apical meristem protein, putative, expressed"	Medtr2g076740.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.4286.14.S1_at	B	B1S	POPTR_0005s00390	POPTR_0005s00390 (0:80)	NA	NA	Q0DKW8	Hydrophobic protein LTI6B	AT3G05880.1	Low temperature and salt responsive protein family 	LOC_Os05g04700.1	"OsRCI2-6 - Hydrophobic protein LTI6B, expressed"	Medtr7g134790.1	Protein of unknown function UPF0057 	NA	NA	GO:0016021|integral to membrane
PtpAffx.4286.8.S1_at	B	B1S	POPTR_0005s00390	POPTR_0005s00390 (2:334)	NA	NA	Q0DKW8	Hydrophobic protein LTI6B	AT3G05880.1	Low temperature and salt responsive protein family 	LOC_Os05g04700.1	"OsRCI2-6 - Hydrophobic protein LTI6B, expressed"	Medtr7g134790.1	Protein of unknown function UPF0057 	NA	NA	GO:0016021|integral to membrane
PtpAffx.4290.1.S1_a_at	B	B1S	POPTR_0010s22840	POPTR_0010s22840 (8:32)	NA	NA	P57720	"Chorismate synthase, chloroplastic"	AT1G48850.1	"chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative "	LOC_Os03g14990.1	"chorismate synthase 2, chloroplast precursor, putative, expressed"	Medtr1g121140.1	Chorismate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004107|chorismate synthase activity	NA
PtpAffx.4290.3.A1_at	B	B1S	POPTR_0010s22840	POPTR_0010s22840 (0:323)	scaffold_10:19610555-19610595(+) (9)	NA	P57720	"Chorismate synthase, chloroplastic"	AT1G48850.1	"chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative "	LOC_Os03g14990.1	"chorismate synthase 2, chloroplast precursor, putative, expressed"	Medtr1g121140.1	Chorismate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004107|chorismate synthase activity	NA
PtpAffx.4290.4.S1_at	B	B1S	POPTR_0010s22840	POPTR_0010s22840 (5:506)	NA	NA	P57720	"Chorismate synthase, chloroplastic"	AT1G48850.1	"chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative "	LOC_Os03g14990.1	"chorismate synthase 2, chloroplast precursor, putative, expressed"	Medtr1g121140.1	Chorismate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004107|chorismate synthase activity	NA
PtpAffx.42953.1.S1_at	B	B1S	POPTR_0002s05320	POPTR_0002s05320 (8:716)	NA	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.2	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g086320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43118.3.A1_at	B	B1S	POPTR_0019s12770	POPTR_0019s12770 (0:576)	NA	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	AT1G63860.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os04g54450.1	"retrotransposon protein, putative, unclassified"	Medtr2g121090.1	Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43166.1.A1_at	B	B1A	POPTR_0006s14020	POPTR_0006s14020 (8:501)	NA	NA	Q5ZKD5	RRP12-like protein	AT2G34357.1	ARM repeat superfamily protein 	LOC_Os02g54110.1	expressed protein	Medtr1g087200.1	"Protein of unknown function, NUC173 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43214.1.S1_at	B	B1S	POPTR_0012s04600	POPTR_0012s04600 (3:418)	NA	NA	Q9ZQ94	Cytokinin-O-glucosyltransferase 3	AT2G36800.1	don-glucosyltransferase 1 	LOC_Os01g08110.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr7g124180.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43219.4.A1_at	B	B1S	POPTR_0001s16520	POPTR_0001s16520 (1:494)	NA	NA	NA	NA	AT1G54070.1	Dormancy/auxin associated family protein 	NA	NA	Medtr8g025840.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43257.1.S1_at	B	B1S	POPTR_0010s07960	POPTR_0010s07960 (0:662)	NA	NA	Q9ZS51	Peroxisomal membrane protein PMP22	AT4G14305.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os08g45210.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr1g090150.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.43327.2.A1_at	B	B1S	POPTR_0006s02240	POPTR_0006s02240 (5:532)	NA	NA	NA	NA	AT2G32190.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 218 Blast hits to 218 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43358.1.A1_at	B	B1S	POPTR_0013s11630	POPTR_0013s11630 (0:21)	NA	NA	Q84TH5	ABC transporter G family member 25	AT1G71960.1	ATP-binding casette family G25 	LOC_Os11g07600.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.43362.1.A1_at	B	B3S	POPTR_0017s03600	POPTR_0017s03430 (4:371)//POPTR_0017s03600 (5:371)//POPTR_0017s03420 (4:371)	NA	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.43381.1.A1_at	B	B1S	POPTR_0005s21750	POPTR_0005s21750 (0:481)	NA	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.43383.1.S1_at	B	B1S	POPTR_0006s13190	POPTR_0006s13190 (0:706)	NA	NA	Q42580	Peroxidase 21	AT2G37130.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr1g078990.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.43404.1.A1_at	B	B1S	POPTR_0003s13990	POPTR_0003s13990 (3:438)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g009300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43408.1.S1_at	B	B3S	POPTR_0004s06190	POPTR_0011s06730 (0:271)//POPTR_1064s00200 (0:271)//POPTR_0004s06190 (0:271)	NA	NA	P51418	60S ribosomal protein L18a-2	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.43456.1.A1_at	B	B1S	POPTR_0012s05140	POPTR_0012s05140 (8:246)	NA	NA	O14099	Uncharacterized RING finger protein C2F3.16	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.43476.1.A1_at	B	B1S	POPTR_0323s00210	POPTR_0323s00210 (6:672)	NA	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT5G61030.1	glycine-rich RNA-binding protein 3 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g105170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.43559.1.A1_at	B	B1S	POPTR_0005s11030	POPTR_0005s11030 (5:397)	scaffold_5:7957666-7958088(-) (11)	NA	Q5Z8P0	Probable protein phosphatase 2C 60	AT3G51370.1	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43564.1.A1_at	B	B2S	POPTR_0015s15210	POPTR_0015s15210 (7:139)//POPTR_0015s15110 (5:105)	NA	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.43566.1.A1_at	B	B1A	POPTR_0014s13240	POPTR_0014s13240 (3:140)	scaffold_14:9765585-9765904(-) (9)	NA	P93051	Sugar transporter ERD6-like 7	AT2G48020.1	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr8g139840.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.43571.1.S1_at	B	B1S	POPTR_0008s05580	POPTR_0008s05580 (8:1507)	NA	NA	Q9Y673	Dolichyl-phosphate beta-glucosyltransferase	AT2G39630.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g60700.1	"dolichyl-phosphate beta-glycosyltransferase, putative, expressed"	Medtr7g027050.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43585.1.A1_at	B	B1S	POPTR_0004s14730	POPTR_0004s14730 (8:627)	scaffold_4:15385841-15386579(-) (9)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT1G49740.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os04g35100.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43603.1.A1_at	B	B1S	POPTR_0005s01910	POPTR_0005s01910 (2:368)	NA	NA	NA	NA	AT1G56320.1	BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT5G49350.2); Has 60 Blast hits to 60 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g14990.1	"GCRP6 - Glycine and cysteine rich family protein precursor, putative, expressed"	Medtr1g100410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43627.2.A1_at	B	B1S	POPTR_0001s03920	POPTR_0001s03920 (5:532)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43651.1.A1_at	B	B1S	POPTR_0006s28160	POPTR_0006s28160 (4:357)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43673.1.A1_at	B	B1S	POPTR_0003s05520	POPTR_0003s05520 (8:390)	NA	NA	NA	NA	AT1G80000.2	CASC3/Barentsz eIF4AIII binding 	LOC_Os01g41190.2	"glycine-rich protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43679.1.A1_at	B	B1S	POPTR_0007s09290	POPTR_0007s09290 (2:239)	NA	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G35780.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.43768.1.S1_at	B	B1S	POPTR_0001s44280	POPTR_0001s44280 (4:448)	NA	NA	A2RSJ4	UHRF1-binding protein 1-like	AT3G20720.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os04g53670.1	expressed protein	Medtr4g111120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43824.2.A1_at	B	B1S	POPTR_0002s09630	POPTR_0002s09630 (7:118)	NA	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os07g43050.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.43860.1.A1_at	B	B1A	POPTR_0006s04000	POPTR_0006s04000 (0:329)	scaffold_6:2711296-2713635(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43880.1.A1_at	B	B1A	POPTR_0001s13010	POPTR_0001s13010 (8:396)	scaffold_1:10095906-10096358(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43887.1.A1_at	B	B1S	POPTR_0001s11350	POPTR_0001s11350 (0:452)	NA	NA	P13254	Methionine gamma-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.44007.3.S1_at	B	B1S	POPTR_0008s19730	POPTR_0008s19730 (6:370)	NA	NA	Q9ZWS9	Two-component response regulator ARR3	AT1G59940.1	response regulator 3 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr5g037580.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.44065.1.A1_at	B	B1S	POPTR_0014s10420	POPTR_0014s10420 (3:335)	NA	NA	NA	NA	AT4G01575.1	"serine protease inhibitor, Kazal-type family protein "	LOC_Os01g59610.1	"KAZ1 - Kazal-type serine protease inhibitor precursor, expressed"	Medtr3g122130.1	"serine protease inhibitor, Kazal-type family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44173.1.A1_at	B	B1S	POPTR_0005s00410	POPTR_0005s00410 (8:247)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44248.1.S1_at	B	B1S	POPTR_0017s01390	POPTR_0017s01390 (8:1288)	NA	NA	Q9SDX3	UTP--glucose-1-phosphate uridylyltransferase	AT5G17310.2	UDP-glucose pyrophosphorylase 2 	LOC_Os09g38030.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	Medtr5g084880.2	UTP--glucose-1-phosphate uridylyltransferase 	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.44303.2.A1_at	B	B1S	POPTR_0008s17150	POPTR_0008s17150 (5:1044)	NA	NA	Q6NM73	Cysteine-rich repeat secretory protein 3	AT1G04520.1	plasmodesmata-located protein 2 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr1g064990.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44396.1.A1_at	B	B1S	POPTR_0017s11430	POPTR_0017s11430 (0:135)	NA	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT3G01280.1	voltage dependent anion channel 1 	LOC_Os09g19734.3	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr7g008680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.44425.1.A1_at	B	B1S	POPTR_0001s22350	POPTR_0001s22350 (7:245)	NA	NA	NA	NA	AT5G22090.2	Protein of unknown function (DUF3049) 	LOC_Os03g49830.1	expressed protein	Medtr4g067120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44448.1.A1_at	B	B1S	POPTR_0011s07580	POPTR_0011s07580 (6:551)	NA	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g46240.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.44492.2.A1_at	B	B1S	POPTR_1419s00200	POPTR_1419s00200 (1:237)	scaffold_1419:4202-5109(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44498.1.A1_at	B	B1S	POPTR_0001s23250	POPTR_0001s23250 (4:192)	NA	NA	Q3UJZ3	Armadillo repeat-containing protein 7	AT5G37290.1	ARM repeat superfamily protein 	LOC_Os11g34364.1	"armadillo/beta-catenin-like repeat containing protein, expressed"	Medtr5g084910.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44512.1.S1_a_at	B	B1S	POPTR_0019s07660	POPTR_0019s07660 (2:67)	scaffold_1218:465-662(+) (11)//scaffold_19:8738290-8738483(-) (11)	NA	NA	NA	AT5G16880.2	Target of Myb protein 1 	LOC_Os02g46962.3	"VHS and GAT domain containing protein, expressed"	Medtr5g007600.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.44515.1.A1_at	B	B1S	POPTR_0005s17480	POPTR_0005s17480 (7:297)	NA	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G65380.1	MATE efflux family protein 	LOC_Os03g08900.1	"MATE efflux family protein, putative, expressed"	Medtr3g150090.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.44523.1.S1_a_at	B	B1S	POPTR_0008s19870	POPTR_0008s19870 (8:30)	NA	NA	Q9XIF4	Thioredoxin H7	AT1G59730.1	thioredoxin H-type 7 	LOC_Os03g58630.1	"thioredoxin, putative, expressed"	Medtr5g038930.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.4454.1.A1_at	B	B1S	POPTR_0006s03950	POPTR_0006s03950 (5:626)	NA	NA	O80366	Two-component response regulator ARR9	AT3G57040.1	response regulator 9 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g039500.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.44575.1.A1_at	B	B1S	POPTR_0001s25990	POPTR_0001s25990 (4:271)	NA	NA	Q9STZ2	SelT-like protein	AT3G47300.1	SELT-like protein precursor 	LOC_Os01g61580.1	"selT-like protein precursor, putative, expressed"	Medtr4g013030.1	SelT/selW/selH selenoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44653.1.A1_at	B	B1S	POPTR_0011s12620	POPTR_0011s12620 (8:651)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.44668.1.S1_at	B	B1S	POPTR_0008s14450	POPTR_0008s14450 (7:458)	NA	NA	NA	NA	AT1G60670.2	Protein of unknown function (DUF3755) 	LOC_Os02g42020.2	expressed protein	Medtr3g025420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44678.1.S1_a_at	B	B1S	POPTR_0002s14010	POPTR_0002s14010 (2:197)	scaffold_2:10389719-10390297(+) (11)	NA	Q9VH78	"Probable dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,6-mannosyltransferase"	AT1G02145.3	homolog of asparagine-linked glycosylation 12 	LOC_Os04g46050.1	"Alg9-like mannosyltransferase protein, putative, expressed"	AC202489_8.1	Alg9-like mannosyltransferase AC202489.10 65337-49058 E EGN_Mt090430 200	GO:0006506|GPI anchor biosynthetic process	"GO:0016757|""transferase activity, transferring glycosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.4470.8.S1_at	B	B1S	POPTR_0003s10350	POPTR_0003s10350 (5:585)	NA	NA	Q8C8R3	Ankyrin-2	AT5G61230.1	Ankyrin repeat family protein 	LOC_Os02g01245.1	hypothetical protein	Medtr5g026690.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44721.1.A1_at	B	B1S	POPTR_0005s18140	POPTR_0005s18140 (8:184)	NA	NA	Q8N2M8	"Splicing factor, arginine/serine-rich 16"	AT4G36980.4	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). "	LOC_Os03g27840.1	"splicing factor, arginine/serine-rich 16, putative, expressed"	Medtr5g017370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44879.1.A1_at	B	B1S	POPTR_0003s04350	POPTR_0003s04350 (5:304)	scaffold_3:5067832-5068892(+) (10)//scaffold_3:5095302-5096519(+) (9)	NA	O59797	Putative nucleosome assembly protein C364.06	AT2G19480.3	nucleosome assembly protein 1;2 	LOC_Os05g46230.1	"NAP domain containing protein, putative, expressed"	Medtr2g046220.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.4493.4.A1_at	B	B1S	POPTR_0018s12630	POPTR_0018s12630 (7:326)	NA	NA	Q00451	36.4 kDa proline-rich protein	AT2G10940.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g43600.2	"LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g121420.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	NA	GO:0005199|structural constituent of cell wall	NA
PtpAffx.4506.2.A1_at	B	B1S	POPTR_0013s15560	POPTR_0013s15560 (0:655)	NA	NA	Q9SPB3	60S ribosomal protein L10	AT1G26910.1	Ribosomal protein L16p/L10e family protein 	LOC_Os11g11390.1	"ribosomal protein, putative, expressed"	Medtr2g132470.1	Ribosomal protein L10E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.45124.1.S1_at	B	B1S	POPTR_0019s08670	POPTR_0019s08670 (6:56)	NA	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT3G56370.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g080410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.45191.2.S1_at	B	B1S	POPTR_0012s14440	POPTR_0012s14440 (8:471)	NA	NA	P59224	40S ribosomal protein S13-2	AT4G00100.1	ribosomal protein S13A 	LOC_Os08g02410.1	"40S ribosomal protein S13, putative, expressed"	Medtr4g025470.1	"S15/NS1, RNA-binding; Ribosomal S13S15 N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.45276.1.S1_at	B	B1S	POPTR_0014s14220	POPTR_0014s14220 (2:203)	NA	NA	Q8N5U6	RING finger protein 10	AT3G26730.1	RING/U-box superfamily protein 	LOC_Os02g31150.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g097010.1	"Zinc finger, RING-type; Site-specific recombinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45338.1.S1_at	B	B1S	POPTR_0006s10130	POPTR_0006s10130 (5:530)	NA	NA	Q39963	Probable pyridoxal biosynthesis protein PDX1	AT5G01410.1	Aldolase-type TIM barrel family protein 	LOC_Os07g01020.1	"SOR/SNZ family protein, putative, expressed"	Medtr2g021510.1	Vitamin B6 biosynthesis protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45369.1.S1_at	B	B1S	POPTR_0018s08330	POPTR_0018s08330 (6:529)	NA	NA	NA	NA	AT1G74530.3	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os08g07430.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.18.A1_at	B	B1S	POPTR_0010s16110	POPTR_0010s16110 (8:527)	scaffold_10:15147678-15148249(+) (9)	NA	Q75QI0	Craniofacial development protein 1	AT5G30490.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). 	LOC_Os01g22500.1	"craniofacial development protein 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.33.A1_at	B	B2S	POPTR_0002s23510	POPTR_0166s00200 (0:420)//POPTR_0002s23510 (8:419)	NA	NA	P40691	Auxin-induced protein PCNT115	AT1G60690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g26910.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g021880.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.4546.2.S1_a_at	B	B1S	POPTR_0010s00370	POPTR_0010s00370 (3:99)	scaffold_10:161040-161326(-) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr2g039000.1	"Importin alpha-like protein, beta-binding region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4546.3.A1_at	B	B1S	POPTR_0010s00370	POPTR_0010s00370 (5:298)	NA	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr2g039000.1	"Importin alpha-like protein, beta-binding region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45488.1.A1_a_at	B	B1S	POPTR_0004s08890	POPTR_0004s08890 (7:323)	NA	NA	Q84TQ7	DELLA protein GAI	AT1G14920.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45491.1.S1_at	B	B1S	POPTR_0031s00380	POPTR_0031s00380 (8:919)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45503.1.S1_at	B	B1S	POPTR_0014s10520	POPTR_0014s10520 (7:551)	NA	NA	NA	NA	AT1G02290.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45830.1); Has 134 Blast hits to 134 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os08g39120.1	expressed protein	Medtr2g113980.1	"Nuclear factor related to kappa-B-binding protein, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45509.1.S1_at	B	B1S	POPTR_0003s20080	POPTR_0003s20080 (0:240)	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g029930.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.45520.1.S1_at	B	B1S	POPTR_0008s19570	POPTR_0008s19570 (0:191)	NA	NA	NA	NA	AT1G69970.2	CLAVATA3/ESR-RELATED 26 	NA	NA	Medtr5g038150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45528.1.S1_at	B	B1S	POPTR_0019s04755	POPTR_0019s04755 (3:3011)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45541.1.S1_at	B	B2S	POPTR_0019s01720	POPTR_0019s01740 (0:157)//POPTR_0019s01720 (0:73)	NA	NA	Q9F131	3-hydroxybenzoate 6-hydroxylase 1	AT5G05320.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g05920.1	expressed protein	Medtr5g013360.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45572.1.S1_at	B	B1A	POPTR_0008s14340	POPTR_0008s14340 (5:3430)	NA	NA	NA	NA	AT2G02180.1	tobamovirus multiplication protein 3 	LOC_Os10g39220.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45574.1.S1_at	B	B1S	POPTR_0008s10470	POPTR_0008s10470 (8:537)	NA	NA	P29130	Phytochrome B	AT2G18790.1	phytochrome B 	LOC_Os03g19590.1	"phytochrome B, putative, expressed"	Medtr2g038110.1	Bacteriophytochrome; ; ; 	"GO:0007165|signal transduction||GO:0023052|signaling||GO:0007600|sensory perception||GO:0018298|protein-chromophore linkage||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0008020|G-protein coupled photoreceptor activity||GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.45609.1.S1_at	B	B1S	POPTR_0011s05740	POPTR_0011s05740 (7:406)	NA	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.45649.1.S1_at	B	B1S	POPTR_0003s16380	POPTR_0003s16380 (8:112)	NA	NA	Q9LYV6	GEM-like protein 5	AT5G13200.1	GRAM domain family protein 	LOC_Os12g29400.1	"GRAM domain containing protein, expressed"	Medtr7g096590.1	GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45708.1.A1_at	B	B1A	POPTR_0014s15260	POPTR_0014s15260 (5:351)	NA	NA	Q00624	L-ascorbate oxidase homolog	AT4G22010.1	SKU5  similar 4 	LOC_Os06g46500.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.45710.1.A1_at	B	B1S	POPTR_0001s45950	POPTR_0001s45950 (7:565)	NA	NA	Q9BVG8	Kinesin-like protein KIFC3	AT5G65930.2	kinesin-like calmodulin-binding protein (ZWICHEL) 	LOC_Os04g57140.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g025080.1	"Band 4.1; Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4; Kinesin, motor region; Prismane-like "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	GO:0005856|cytoskeleton
PtpAffx.45729.1.A1_a_at	B	B1S	POPTR_0003s01280	POPTR_0003s01280 (8:31)	NA	NA	Q6P5E4	UDP-glucose:glycoprotein glucosyltransferase 1	AT1G71220.2	"UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups "	LOC_Os02g44510.1	"UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed"	Medtr2g007060.1	UDP-glucose:Glycoprotein Glucosyltransferase 	GO:0006486|protein amino acid glycosylation	GO:0003980|UDP-glucose:glycoprotein glucosyltransferase activity	NA
PtpAffx.45747.1.S1_at	B	B1S	POPTR_0022s00460	POPTR_0022s00460 (4:242)	NA	NA	B0S733	Regulator of nonsense transcripts 3A	AT1G33980.1	Smg-4/UPF3 family protein 	LOC_Os04g35920.2	"nonsense-mediated decay UPF3, putative, expressed"	Medtr2g005430.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45748.1.S1_at	B	B1S	POPTR_0002s21530	POPTR_0002s21530 (6:457)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45759.1.S1_at	B	B1S	POPTR_0015s13840	POPTR_0015s13840 (6:509)	NA	NA	Q9FJ90	Ethylene-responsive transcription factor ERF025	AT5G52020.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g45420.1	"AP2 domain containing protein, expressed"	Medtr1g129460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.45770.1.S1_at	B	B1S	POPTR_0003s08440	POPTR_0003s08440 (0:4)	scaffold_3:9848781-9848832(-) (11)	NA	NA	NA	AT5G47020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g10380.1	"glycine-rich protein, putative, expressed"	Medtr5g014010.1	"glycine-rich protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45781.1.S1_at	B	B1S	POPTR_0015s08400	POPTR_0015s08400 (7:397)	NA	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50850.1	"BAH domain containing protein, putative, expressed"	Medtr4g149410.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.45821.1.A1_at	B	B1S	POPTR_0001s09330	POPTR_0001s09330 (2:201)	NA	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g149480.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.45836.1.A1_at	B	B1S	POPTR_0010s23940	POPTR_0010s23940 (1:158)	NA	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.45902.1.A1_at	B	B1S	POPTR_0005s15140	POPTR_0005s15140 (7:140)	NA	NA	Q8LFD1	"Putative lipid phosphate phosphatase 3, chloroplastic"	AT3G02600.2	lipid phosphate phosphatase 3 	LOC_Os01g04660.1	"lipid phosphatase protein, putative, expressed"	Medtr7g093870.1	"Phosphoesterase, PA-phosphatase related "	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.45906.1.A1_at	B	B1S	POPTR_0013s15710	POPTR_0013s15710 (0:13)	NA	NA	Q14191	Werner syndrome ATP-dependent helicase	AT1G31360.1	RECQ helicase L2 	LOC_Os07g48360.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr2g006260.1	ATP-requiring DNA helicase RecQ; HRDC-like; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003676|nucleic acid binding||GO:0043140|ATP-dependent 3'-5' DNA helicase activity||GO:0005524|ATP binding	GO:0005622|intracellular
PtpAffx.45912.1.S1_at	B	B1S	POPTR_0005s18000	POPTR_0005s18000 (0:25)	NA	NA	NA	NA	AT4G37080.3	"Protein of unknown function, DUF547 "	LOC_Os09g28850.3	expressed protein	Medtr5g017780.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45942.1.A1_at	B	B1S	POPTR_0014s15620	POPTR_0014s15620 (4:511)	NA	NA	NA	NA	AT2G32980.1	unknown protein; Has 158 Blast hits to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os08g10410.1	expressed protein	Medtr2g005540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46061.1.S1_at	B	B1S	POPTR_0001s39220	POPTR_0001s39220 (7:523)	NA	NA	Q9SYM4	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1"	AT1G78580.1	trehalose-6-phosphate synthase 	LOC_Os05g44210.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g136450.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.46092.1.S1_at	B	B1S	POPTR_0019s02250	POPTR_0019s02250 (8:1396)	NA	NA	Q5R7A8	C-Myc-binding protein	AT2G14045.2	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g08820.1	"C-Myc-binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46164.1.S1_at	B	B1S	POPTR_0001s18930	POPTR_0001s18930 (4:207)	scaffold_1:16115940-16116272(-) (10)	NA	Q9ZU11	Homeobox-leucine zipper protein ATHB-15	AT1G52150.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr8g015460.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.46310.1.A1_at	B	B1A	POPTR_0009s10130	POPTR_0009s10130 (7:133)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4633.2.S1_at	B	B1S	POPTR_0018s10070	POPTR_0018s10070 (8:39)	NA	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.46346.1.S1_at	B	B1S	POPTR_0008s04030	POPTR_0008s04030 (7:2406)	NA	NA	Q2MY58	Patatin group A-3	AT2G39220.1	PATATIN-like protein 6 	LOC_Os03g14950.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g121000.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.46346.2.S1_at	B	B1S	POPTR_0010s22850	POPTR_0010s22850 (8:387)	NA	NA	Q2MY58	Patatin group A-3	AT2G39220.1	PATATIN-like protein 6 	LOC_Os03g14950.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g121000.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.46365.2.S1_at	B	B1S	POPTR_0004s17150	POPTR_0004s17150 (8:560)	NA	NA	P33081	Auxin-induced protein 15A	AT4G34760.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr5g021770.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46447.1.S1_at	B	B1S	POPTR_0003s11920	POPTR_0003s11920 (4:66)	NA	NA	O64644	Histone deacetylase complex subunit SAP18	AT2G45640.1	SIN3 associated polypeptide P18 	LOC_Os02g02960.4	"histone deacetylase complex subunit SAP18, putative, expressed"	AC233100_3.1	Sin3 associated polypeptide p18 AC233100.6 16242-12510 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4645.2.S1_at	B	B1S	POPTR_0001s39200	POPTR_0001s39200 (1:114)	scaffold_1:38381938-38386447(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT3G14770.1	Nodulin MtN3 family protein 	LOC_Os01g36070.1	"nodulin MtN3 family protein, putative, expressed"	AC235677_9.1	MtN3 and saliva related transmembrane protein AC235677.1 36992-34899 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46493.1.S1_at	B	B1S	POPTR_0017s01240	POPTR_0017s01240 (8:328)	NA	NA	Q01332	Beta-carotene hydroxylase	AT4G25700.1	beta-hydroxylase 1 	LOC_Os03g03370.1	"fatty acid hydroxylase, putative, expressed"	Medtr1g126460.2	Carotene hydroxylase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.4650.1.A1_x_at	B	B1S	POPTR_0013s02710	POPTR_0013s02710 (5:154)	NA	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29150.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.46531.1.A1_at	B	B1S	POPTR_0008s20160	POPTR_0008s20160 (5:520)	NA	NA	Q8S9G8	Squamosa promoter-binding-like protein 7	AT5G18830.1	squamosa promoter binding protein-like 7 	LOC_Os05g33810.1	"OsSPL9 - SBP-box gene family member, expressed"	Medtr2g025690.1	SBP 	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0046872|metal ion binding	GO:0005634|nucleus
PtpAffx.46531.2.A1_at	B	B1S	POPTR_0008s20160	POPTR_0008s20160 (6:1458)	NA	NA	Q8S9G8	Squamosa promoter-binding-like protein 7	AT5G18830.1	squamosa promoter binding protein-like 7 	LOC_Os05g33810.1	"OsSPL9 - SBP-box gene family member, expressed"	Medtr2g025690.1	SBP 	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0046872|metal ion binding	GO:0005634|nucleus
PtpAffx.46537.2.A1_at	B	B1S	POPTR_0013s07140	POPTR_0013s07140 (0:11)	scaffold_13:5860547-5860621(-) (11)	NA	P37545	Uncharacterized deoxyribonuclease yabD	AT5G17570.1	TatD related DNase 	LOC_Os04g48820.2	"deoxyribonuclease tatD, putative, expressed"	NA	NA	NA	"GO:0016888|""endodeoxyribonuclease activity, producing 5'-phosphomonoesters"""	NA
PtpAffx.4666.1.A1_at	B	B1S	POPTR_0004s01940	POPTR_0004s01940 (0:451)	NA	NA	Q9SSK7	MLP-like protein 34	AT1G70880.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	NA	NA	Medtr8g012990.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
PtpAffx.46665.2.S1_at	B	B1S	POPTR_0002s02420	POPTR_0002s02420 (8:315)	NA	NA	Q93X17	Snakin-2	AT1G75750.2	GAST1 protein homolog 1 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr3g156410.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4667.1.S1_at	B	B1S	POPTR_0016s07160	POPTR_0016s07160 (2:1791)	NA	NA	Q9FNH4	"Nudix hydrolase 27, chloroplastic"	AT5G06340.1	nudix hydrolase homolog 27 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.4667.2.A1_at	B	B1S	POPTR_0016s07160	POPTR_0016s07160 (2:1348)	NA	NA	Q9FNH4	"Nudix hydrolase 27, chloroplastic"	AT5G06340.1	nudix hydrolase homolog 27 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.46700.1.S1_at	B	B1S	POPTR_0004s14890	POPTR_0004s14890 (6:979)	NA	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46725.3.A1_at	B	B1S	POPTR_0016s10110	POPTR_0016s10110 (3:551)	NA	NA	NA	NA	AT3G53990.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os05g37970.3	"universal stress protein domain containing protein, putative, expressed"	Medtr7g071220.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.46748.1.A1_at	B	B1S	POPTR_0010s05540	POPTR_0010s05540 (8:450)	scaffold_10:6983173-6983693(+) (11)	NA	NA	NA	AT5G40460.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g034560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.46815.2.S1_at	B	B1S	POPTR_0017s12470	POPTR_0017s12470 (6:441)	NA	NA	P42738	"Chorismate mutase, chloroplastic"	AT3G29200.1	chorismate mutase 1 	LOC_Os01g55870.1	"chorismate mutase, chloroplast precursor, putative, expressed"	Medtr1g016760.1	Chorismate mutase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004106|chorismate mutase activity	NA
PtpAffx.469.1.A1_at	B	B1S	POPTR_0002s17200	POPTR_0002s17200 (8:1241)	NA	NA	O15818	Protein KIAA0664 homolog	AT1G01320.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g23990.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	AC235758_23.1	Tetratricopeptide-like helical; AC235758.1 151415-160426 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47009.1.S1_at	B	B1S	POPTR_0008s16640	POPTR_0008s16640 (7:516)	NA	NA	Q8RWL2	Calcium-dependent protein kinase 29	AT1G08650.1	phosphoenolpyruvate carboxylase kinase 1 	LOC_Os02g56310.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g093530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.47049.1.A1_at	B	B1S	POPTR_0018s01630	POPTR_0018s01630 (4:110)	NA	NA	NA	NA	AT3G47650.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os06g22690.1	"bundle sheath defective protein 2, putative, expressed"	Medtr3g136830.1	"Chaperon P13.9, putative "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.47094.1.A1_at	B	B1S	POPTR_0003s19530	POPTR_0003s19530 (1:359)	scaffold_3:18228509-18229008(+) (9)	NA	Q9LK88	NADPH:quinone oxidoreductase	AT3G27890.1	NADPH:quinone oxidoreductase 	LOC_Os01g72430.1	"NADPH quinone oxidoreductase, putative, expressed"	Medtr8g042840.1	NADPH-dependent FMN reductase 	NA	GO:0050662|coenzyme binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.47143.1.S1_at	B	B1S	POPTR_0002s16790	POPTR_0002s16790 (4:165)	NA	NA	NA	NA	AT2G46240.1	BCL-2-associated athanogene 6 	NA	NA	AC233577_23.1	"IQ calmodulin-binding region; Apoptosis regulator Bcl-2 protein, BAG AC233577.5 108766-103915 E EGN_Mt090430 200"	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.47156.1.S1_s_at	B	B1S	POPTR_0013s07690	POPTR_0013s07690 (8:102)	scaffold_13:6534604-6534741(+) (10)	NA	NA	NA	NA	NA	LOC_Os04g50208.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47157.1.S1_at	B	B2A	POPTR_0004s09040	POPTR_0004s09040 (5:261)//POPTR_0004s09051 (3:190)	NA	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.47165.1.S1_at	B	B1S	POPTR_0008s15210	POPTR_0008s15210 (7:344)	NA	NA	NA	NA	AT1G05380.2	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086270.1	"PHD finger family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47176.1.S1_s_at	B	B1S	POPTR_0006s24580	POPTR_0006s24580 (4:57)	NA	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G11850.1	Protein kinase superfamily protein 	LOC_Os02g12810.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.47186.1.S1_at	B	B1A	POPTR_0004s18460	POPTR_0004s18460 (7:218)	scaffold_4:18348464-18348742(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47208.1.S1_at	B	B1S	POPTR_0015s14550	POPTR_0015s14550 (7:1133)	NA	NA	Q84KJ5	"Cryptochrome DASH, chloroplastic/mitochondrial"	AT4G25290.1	DNA photolyases;DNA photolyases 	LOC_Os09g36240.3	"deoxyribodipyrimidine photolyase family protein, expressed"	Medtr5g067450.1	Alpha/beta hydrolase fold 	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.47214.3.S1_at	B	B1S	POPTR_0015s10410	POPTR_0015s10410 (7:614)	NA	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.4723.1.A1_at	B	B1A	POPTR_0001s41080	POPTR_0001s41080 (0:755)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47237.3.S1_at	B	B1S	POPTR_0003s05290	POPTR_0003s05290 (8:1257)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g008940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47258.1.S1_at	B	B1S	POPTR_0011s12220	POPTR_0011s12220 (8:537)	NA	NA	Q9FI00	MLO-like protein 11	AT5G53760.2	Seven transmembrane MLO family protein 	LOC_Os11g07912.1	"MLO domain containing protein, putative, expressed"	AC225519_22.1	Mlo-related protein AC225519.5 96204-99734 H EGN_Mt090430 200	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.4733.1.S1_x_at	B	B1S	POPTR_0004s08380	POPTR_0004s08380 (8:232)	NA	NA	P51118	Glutamine synthetase cytosolic isozyme 1	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
PtpAffx.47331.1.S1_at	B	B1S	POPTR_0011s11750	POPTR_0011s11750 (8:521)	NA	NA	NA	NA	AT3G15250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53163.1); Has 409 Blast hits to 218 proteins in 63 species: Archae - 0; Bacteria - 22; Metazoa - 178; Fungi - 77; Plants - 38; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47343.1.S1_at	B	B1S	POPTR_0004s13920	POPTR_0004s13920 (7:274)	scaffold_4:14294497-14296165(-) (9)	NA	Q93Y37	"Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3"	AT1G30000.1	alpha-mannosidase 3 	LOC_Os05g11850.1	"glycosyl hydrolase family 47 domain contain protein, expressed"	Medtr2g024730.1	"Glycoside hydrolase, family 47 "	NA	"GO:0004571|""mannosyl-oligosaccharide 1,2-alpha-mannosidase activity""||GO:0005509|calcium ion binding"	GO:0016020|membrane
PtpAffx.47448.1.S1_at	B	B2S	POPTR_0015s15660	POPTR_0015s15660 (6:532)//POPTR_0015s15530 (4:514)	NA	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G18670.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g021770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4750.1.S1_at	B	B1S	POPTR_0007s14310	POPTR_0007s14310 (5:1289)	NA	NA	Q9FVC1	MADS-box protein SVP	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os03g08754.2	"OsMADS47 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.47518.1.S1_at	B	B1S	POPTR_0008s19750	POPTR_0008s19750 (8:645)	scaffold_8:13625352-13625997(+) (9)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr4g160230.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.47665.1.S1_at	B	B1S	POPTR_0005s15820	POPTR_0005s15820 (5:314)	NA	NA	Q6J163	Auxin-induced protein 5NG4	AT4G08290.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097620.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.47790.1.S1_at	B	B1S	POPTR_0008s11350	POPTR_0008s11350 (7:250)	NA	NA	Q9CA40	Nudix hydrolase 1	AT1G68760.1	nudix hydrolase  1 	NA	NA	Medtr5g071730.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.47882.1.S1_at	B	B1S	POPTR_0001s01190	POPTR_0001s01190 (8:333)	NA	NA	P16157	Ankyrin-1	AT5G61230.1	Ankyrin repeat family protein 	LOC_Os02g01245.1	hypothetical protein	Medtr5g026690.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47898.1.S1_at	B	B1S	POPTR_0013s05840	POPTR_0013s05840 (5:651)	scaffold_13:4202207-4203508(-) (10)	NA	NA	NA	NA	NA	LOC_Os01g56520.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr6g092600.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.47973.1.S1_at	B	B1S	POPTR_0001s36330	POPTR_0001s36330 (7:385)	NA	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.1	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48047.1.S1_at	B	B1S	POPTR_0009s05760	POPTR_0009s05760 (7:449)	NA	NA	Q9LXV5	Nuclear transcription factor Y subunit A-1	AT5G12840.4	"nuclear factor Y, subunit A1 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.4806.3.S1_at	B	B1S	POPTR_0005s07290	POPTR_0005s07290 (8:818)	NA	NA	P46668	Homeobox-leucine zipper protein ATHB-6	AT2G22430.1	homeobox protein 6 	LOC_Os09g29460.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g102220.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.48117.1.S1_at	B	B1S	POPTR_0012s01580	POPTR_0012s01580 (8:270)	NA	NA	Q58DR2	DnaJ homolog subfamily B member 12	AT5G53150.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os04g31940.1	"dnaJ domain containing protein, expressed"	Medtr3g124470.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.48123.1.A1_at	B	B2S	POPTR_0011s12820	POPTR_0011s12820 (6:385)//POPTR_0315s00200 (4:344)	NA	NA	NA	NA	AT5G54490.1	pinoid-binding protein 1 	LOC_Os06g46950.1	"EF hand family protein, putative, expressed"	Medtr2g011470.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48162.1.S1_at	B	B1S	POPTR_0006s12490	POPTR_0006s12490 (5:286)	NA	NA	O28033	Protein AF_2251	AT5G03430.1	phosphoadenosine phosphosulfate (PAPS) reductase family protein 	LOC_Os01g15490.1	"phosphoadenosine phosphosulfate, putative, expressed"	NA	NA	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	GO:0016740|transferase activity	NA
PtpAffx.48184.1.S1_at	B	B1S	POPTR_0017s03370	POPTR_0017s03370 (5:1233)	scaffold_17:2465713-2467250(-) (11)	NA	NA	NA	AT1G03610.1	Protein of unknown function (DUF789) 	LOC_Os06g51330.1	expressed protein	Medtr6g089670.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48227.1.S1_at	B	B1S	POPTR_0002s07810	POPTR_0002s07810 (8:498)	NA	NA	Q3ED78	Zinc finger CCCH domain-containing protein 7	AT1G21580.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os06g43120.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.48231.3.A1_at	B	B1S	POPTR_0004s16010	POPTR_0004s16010 (5:312)	NA	NA	NA	NA	AT1G11760.1	MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g40070.1	expressed protein	Medtr3g159700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48254.1.A1_at	B	B1S	POPTR_0003s14780	POPTR_0003s14780 (7:349)	NA	NA	C0LGH2	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	AT1G56145.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os08g10290.1	"SHR5-receptor-like kinase, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.48257.1.A1_at	B	B1S	POPTR_0007s04320	POPTR_0007s04320 (7:342)	NA	NA	NA	NA	AT5G20680.3	TRICHOME BIREFRINGENCE-LIKE 16 	LOC_Os11g13800.2	expressed protein	Medtr4g143010.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4826.1.A1_at	B	B2S	POPTR_0018s13400	POPTR_0018s13470 (1:1237)//POPTR_0018s13400 (5:1030)	NA	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.48262.1.A1_at	B	B1S	POPTR_0008s08480	POPTR_0008s08480 (3:297)	NA	NA	NA	NA	AT3G19870.1	unknown protein; Has 84 Blast hits to 64 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). 	LOC_Os02g58250.1	expressed protein	Medtr4g101310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48269.1.A1_at	B	B1S	POPTR_0003s20440	POPTR_0003s20440 (0:273)	NA	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.48293.1.A1_at	B	B1S	POPTR_0015s11590	POPTR_0015s11590 (6:954)	NA	NA	NA	NA	AT3G48860.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48304.1.S1_at	B	B1S	POPTR_0015s07150	POPTR_0015s07150 (7:197)	NA	NA	P20075	Embryonic protein DC-8	AT2G36640.1	embryonic cell protein 63 	LOC_Os03g20680.1	"late embryogenesis abundant protein 1, putative, expressed"	Medtr1g073780.1	Late embryogenesis abundant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48319.1.S1_at	B	B1A	POPTR_0004s08350	POPTR_0004s08350 (7:324)	scaffold_4:6884759-6885304(+) (11)	NA	NA	NA	AT5G37550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g087370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48344.1.S1_at	B	B2S	POPTR_0005s10230	POPTR_0005s10230 (5:4820)//POPTR_0005s10220 (4:2525)	NA	NA	NA	NA	AT5G65980.1	Auxin efflux carrier family protein 	LOC_Os09g38130.1	"auxin efflux carrier component, putative, expressed"	Medtr5g024600.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.48344.2.S1_at	B	B2S	POPTR_0005s10220	POPTR_0005s10220 (4:397)//POPTR_0005s10230 (4:397)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48360.1.S1_at	B	B1S	POPTR_0008s02440	POPTR_0008s02440 (8:406)	scaffold_8:1183601-1184073(-) (10)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48361.1.A1_at	B	B1S	POPTR_0004s16300	POPTR_0004s16300 (7:1012)	NA	NA	NA	NA	AT2G18360.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g44960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g093180.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48368.1.S1_at	B	B1S	POPTR_0005s20060	POPTR_0005s20060 (7:550)	NA	NA	Q9MBA1	"Chlorophyllide a oxygenase, chloroplastic"	AT1G44446.1	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain 	LOC_Os10g41780.1	"chlorophyllide a oxygenase, chloroplast precursor, putative, expressed"	Medtr1g037120.1	"Aminotransferase, class-II; Rieske [2Fe-2S] region "	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.48381.1.A1_at	B	B1S	POPTR_1239s00210	POPTR_1239s00210 (6:2262)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48383.1.A1_at	B	B1S	POPTR_0011s11680	POPTR_0011s11680 (6:539)	NA	NA	B2SYT3	Ribosomal protein L11 methyltransferase	AT5G53920.1	ribosomal protein L11 methyltransferase-related 	LOC_Os05g41800.1	"ribosomal protein L11 methyltransferase-related, putative, expressed"	Medtr8g071230.1	Ribosomal L11 methyltransferase 	GO:0006479|protein amino acid methylation||GO:0044281|small molecule metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0008276|protein methyltransferase activity	GO:0005737|cytoplasm
PtpAffx.48419.1.A1_at	B	B2S	POPTR_0011s05490	POPTR_0011s05490 (6:317)//POPTR_0011s05480 (5:183)	scaffold_11:5451483-5455220(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48423.1.S1_at	B	B1S	POPTR_0004s11610	POPTR_0004s11610 (7:542)	NA	NA	Q9SRT7	COBRA-like protein 1	AT3G02210.1	COBRA-like protein 1 precursor 	LOC_Os07g41310.1	"COBRA, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48461.1.A1_at	B	B1S	POPTR_0008s08050	POPTR_0008s08050 (8:471)	scaffold_8:4988065-4988548(-) (10)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G44680.1	DNA glycosylase superfamily protein 	LOC_Os01g58550.1	"methyladenine glycosylase, putative, expressed"	Medtr2g085500.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.48509.1.A1_at	B	B1S	POPTR_0005s10480	POPTR_0005s10480 (0:217)	NA	NA	O81788	WUSCHEL-related homeobox 13	AT4G35550.1	WUSCHEL related homeobox 13 	LOC_Os01g60270.2	"homeobox domain containing protein, expressed"	Medtr7g025190.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.4851.2.S1_at	B	B1S	POPTR_0014s06670	POPTR_0014s06670 (4:104)	scaffold_14:5070642-5071038(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48835.1.S1_at	B	B1S	POPTR_0012s05530	POPTR_0012s05530 (2:78)	scaffold_12:5185818-5189586(+) (10)	NA	Q84J78	"Single-stranded DNA-binding protein, mitochondrial"	AT3G18580.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g45530.1	"single-stranded DNA-binding protein, putative, expressed"	Medtr8g116470.1	Single-stranded DNA binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48839.1.S1_at	B	B1S	POPTR_0001s40200	POPTR_0001s40200 (4:211)	scaffold_1:39556834-39557308(+) (9)	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78860.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23760.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.48915.1.S1_at	B	B1S	POPTR_0004s24490	POPTR_0004s24490 (3:169)	NA	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT4G19180.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os10g21000.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g025310.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.48947.1.A1_at	B	B1S	POPTR_0007s01930	POPTR_0007s01930 (6:1278)	NA	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G07500.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g50900.1	"transposon protein, putative, unclassified, expressed"	Medtr2g118460.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48952.1.A1_at	B	B1S	POPTR_0007s01710	POPTR_0007s01710 (2:132)	NA	NA	A9X4U2	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3	AT2G43420.1	3-beta hydroxysteroid dehydrogenase/isomerase family protein 	LOC_Os03g29170.1	"sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed"	Medtr4g092500.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0044237|cellular metabolic process||GO:0006694|steroid biosynthetic process	GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity||GO:0050662|coenzyme binding	GO:0005783|endoplasmic reticulum
PtpAffx.48978.1.A1_at	B	B1S	POPTR_0018s12770	POPTR_0018s12770 (5:331)	scaffold_18:13290970-13291399(+) (10)	NA	Q8TC07	TBC1 domain family member 15	AT5G52580.1	RabGAP/TBC domain-containing protein 	LOC_Os02g48000.1	"TBC domain containing protein, expressed"	Medtr8g121210.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.491.3.S1_at	B	B1S	POPTR_0002s20530	POPTR_0002s20530 (5:284)	scaffold_2:16603941-16604409(+) (11)	NA	Q8LB72	Blue-light photoreceptor PHR2	AT2G47590.1	photolyase/blue-light receptor 2 	LOC_Os03g22330.1	"blue-light photoreceptor PHR2, putative, expressed"	Medtr1g108320.1	"DNA photolyase, FAD- binding N-terminal "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.49222.1.S1_at	B	B1S	POPTR_0019s08170	POPTR_0019s08170 (4:366)	scaffold_19:9629955-9635881(+) (9)	NA	Q42533	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic"	AT5G16390.2	chloroplastic acetylcoenzyme A carboxylase 1 	NA	NA	Medtr7g089920.1	Biotin-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49277.1.A1_at	B	B1S	POPTR_0018s02100	POPTR_0018s02100 (7:1226)	NA	NA	Q6DJ03	Protein MEMO1	AT2G25280.1	"CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). "	LOC_Os08g20270.2	"MEMO1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49304.1.S1_at	B	B1S	POPTR_0007s14960	POPTR_0007s14960 (2:1268)	scaffold_14:979077-980355(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.49364.1.S1_at	B	B1S	POPTR_0013s07670	POPTR_0013s07670 (8:5974)	NA	NA	NA	NA	AT1G65020.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). "	LOC_Os10g42630.1	expressed protein	Medtr5g007470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.494.2.S1_at	B	B1S	POPTR_0008s14360	POPTR_0008s14360 (8:187)	NA	NA	Q8L799	Inositol oxygenase 1	AT1G14520.2	myo-inositol oxygenase 1 	LOC_Os06g36560.2	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
PtpAffx.4942.2.S1_at	B	B1S	POPTR_0004s17580	POPTR_0004s17580 (2:452)	NA	NA	P45434	Translocon-associated protein subunit alpha	AT2G16595.1	"Translocon-associated protein (TRAP), alpha subunit "	LOC_Os06g50154.1	"translocon-associated protein subunit alpha precursor, putative, expressed"	Medtr3g163280.1	"Translocon-associated protein subunit alpha precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4944.1.A1_at	B	B1S	POPTR_0011s00740	POPTR_0011s00740 (6:2032)	NA	NA	O95563	Brain protein 44	AT4G22310.1	Uncharacterised protein family (UPF0041) 	LOC_Os07g26700.1	"UPF0041 domain containing protein, putative, expressed"	Medtr2g029550.1	Protein of unknown function UPF0041 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4950.2.S1_at	B	B1S	POPTR_0004s09250	POPTR_0004s09250 (3:203)	scaffold_4:7783145-7783564(-) (11)	NA	P48724	Eukaryotic translation initiation factor 5	AT1G77840.1	Translation initiation factor IF2/IF5 	LOC_Os06g48355.1	expressed protein	Medtr7g094130.1	Translation initiation factor IF5; eIF4-gamma/eIF5/eIF2-epsilon 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.49649.1.A1_at	B	B1S	POPTR_0003s00220	POPTR_0003s00220 (2:134)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.49675.1.A1_at	B	B1S	POPTR_0013s14300	POPTR_0013s14300 (3:499)	NA	NA	NA	NA	AT4G28210.1	embryo defective 1923 	NA	NA	AC229695_5.1	"EMB1923, putative AC229695.5 25446-23176 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4971.4.S1_at	B	B1S	POPTR_0011s08720	POPTR_0011s08720 (0:261)	NA	NA	Q6P819	Cell differentiation protein RCD1 homolog	AT3G20800.1	"Cell differentiation, Rcd1-like protein "	LOC_Os03g57130.1	expressed protein	Medtr1g149730.1	"Cell differentiation proteins, Rcd1-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49711.1.A1_at	B	B1S	POPTR_0006s17900	POPTR_0006s17900 (8:334)	NA	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.49746.1.A1_a_at	B	B1S	POPTR_0015s03810	POPTR_0015s03810 (8:157)	NA	NA	Q8VYB5	AMSH-like ubiquitin thiolesterase 1	AT1G48790.1	associated molecule with the SH3 domain of STAM 1 	LOC_Os01g31470.1	"mov34/MPN/PAD-1 family protein, expressed"	Medtr6g027970.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49767.2.A1_at	B	B1S	POPTR_0012s12810	POPTR_0012s12810 (8:306)	NA	NA	P74436	Uncharacterized transporter sll0355	AT3G02690.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g35140.1	"integral membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.49777.1.A1_at	B	B1S	POPTR_0001s29430	POPTR_0001s29430 (8:540)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g111350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4978.4.S1_a_at	B	B1S	POPTR_0013s04360	POPTR_0013s04360 (4:28)	scaffold_13:2978738-2978866(+) (11)	NA	NA	NA	AT5G28490.1	Protein of unknown function (DUF640) 	LOC_Os05g28040.1	"DUF640 domain containing protein, putative, expressed"	Medtr1g043150.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49806.2.A1_at	B	B1S	POPTR_0012s05680	POPTR_0012s05680 (1:208)	NA	NA	NA	NA	AT1G18470.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49807.1.A1_a_at	B	B1S	POPTR_0007s00450	POPTR_0007s00450 (8:197)	NA	NA	Q7ZWE3	La-related protein 7	AT2G43970.1	RNA-binding protein 	LOC_Os12g12360.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr4g128970.1	"RNA-binding protein Lupus La; Ataxin-2, C-terminal; Winged helix repressor DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49812.1.A1_at	B	B1S	POPTR_0017s09660	POPTR_0017s09660 (6:260)	NA	NA	NA	NA	AT3G01930.2	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49836.1.A1_at	B	B1S	POPTR_0002s04180	POPTR_0002s04180 (8:1270)	scaffold_2:2604793-2606127(-) (10)	NA	NA	NA	AT4G14420.1	HR-like lesion-inducing protein-related 	LOC_Os04g10240.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.4986.1.S1_s_at	B	B1A	POPTR_0015s00320	POPTR_0015s00320 (5:157)	scaffold_15:150368-150799(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49866.1.A1_at	B	B1S	POPTR_0014s13610	POPTR_0014s13610 (1:92)	scaffold_14:9995231-9995577(+) (11)	NA	NA	NA	AT5G47920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g31350.1	expressed protein	Medtr7g099490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49932.1.A1_at	B	B1S	POPTR_0008s14860	POPTR_0008s14860 (5:452)	NA	NA	Q4TU14	E3 ubiquitin-protein ligase RHF1A	AT4G14220.1	RING-H2 group F1A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49953.1.A1_at	B	B1S	POPTR_0001s00430	POPTR_0001s00430 (0:3356)	NA	NA	NA	NA	AT5G47570.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g40410.1	expressed protein	Medtr8g105980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49974.1.A1_at	B	B1S	POPTR_0012s08670	POPTR_0012s08670 (8:264)	NA	NA	Q86GL4	Superoxide-generating NADPH oxidase heavy chain subunit B	AT5G50160.1	ferric reduction oxidase 8 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.49997.1.A1_at	B	B1S	POPTR_0018s01330	POPTR_0018s01330 (7:736)	NA	NA	Q9ZP41	EG45-like domain containing protein	NA	NA	LOC_Os09g29710.1	"beta-expansin precursor, putative, expressed"	Medtr3g136440.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50002.1.A1_at	B	B1S	POPTR_0001s25900	POPTR_0001s25900 (8:395)	scaffold_1:24985205-24985742(+) (11)	NA	Q29AU6	O-glucosyltransferase rumi	AT1G07220.1	Arabidopsis thaliana protein of unknown function (DUF821) 	LOC_Os05g05690.1	"DTA2, putative, expressed"	Medtr6g031280.1	Lipopolysaccharide-modifying protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50031.1.A1_at	B	B1S	POPTR_0002s12140	POPTR_0002s12140 (1:1749)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50048.1.A1_at	B	B1S	POPTR_0002s05920	POPTR_0002s05920 (6:314)	NA	NA	Q680C0	GDSL esterase/lipase At4g10955	AT5G50890.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g54810.1	"lipase, putative, expressed"	Medtr5g098440.1	"lipase class 3 family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50057.1.S1_at	B	B1S	POPTR_0011s15480	POPTR_0011s15480 (7:364)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50058.1.A1_a_at	B	B1S	POPTR_0001s36210	POPTR_0001s36210 (4:38)	scaffold_1:34717675-34717775(-) (11)//scaffold_1:34717787-34717947(-) (11)	NA	NA	NA	AT3G27330.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os08g02850.1	"zinc finger family protein, putative, expressed"	Medtr2g034480.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50071.1.A1_at	B	B1S	POPTR_0009s10150	POPTR_0009s10150 (4:219)	scaffold_9:8796706-8797237(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50080.2.A1_a_at	B	B1S	POPTR_0014s09880	POPTR_0014s09880 (8:955)	scaffold_14:7398085-7399114(+) (10)//scaffold_14:7412118-7413091(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50094.1.A1_at	B	B1S	POPTR_0001s29280	POPTR_0001s29280 (0:48)	NA	NA	NA	NA	AT5G64470.2	Plant protein of unknown function (DUF828) 	LOC_Os02g02580.1	expressed protein	Medtr4g121840.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50140.1.A1_at	B	B1S	POPTR_0012s13750	POPTR_0012s13750 (8:371)	scaffold_12:13761188-13761722(-) (11)	NA	NA	NA	AT3G56060.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os04g48400.1	"HOTHEAD precursor, putative, expressed"	Medtr1g129660.1	Alcohol oxidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50149.1.A1_at	B	B1S	POPTR_0004s09470	POPTR_0004s09470 (8:308)	scaffold_4:8004139-8004600(+) (11)	NA	NA	NA	AT5G16220.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os01g04650.1	"PB1 domain containing protein, expressed"	Medtr8g096190.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50175.1.A1_at	B	B1S	POPTR_0004s10430	POPTR_0004s10430 (6:474)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5028.2.S1_at	B	B1S	POPTR_0004s02080	POPTR_0004s02080 (0:177)	NA	NA	Q8H159	Polyubiquitin 10	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50294.1.A1_at	B	B1S	POPTR_0001s04090	POPTR_0001s04090 (0:287)	NA	NA	Q2T9S3	DNA-directed RNA polymerase III subunit RPC6	AT5G23710.1	DNA binding;DNA-directed RNA polymerases 	LOC_Os06g40110.1	"RNA polymerase Rpc34 subunit family protein, expressed"	Medtr7g020650.1	Copper fist DNA-binding; RNA polymerase Rpc34 subunit 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.503.3.S1_at	B	B1A	POPTR_0012s07880	POPTR_0012s07880 (7:440)	scaffold_12:8829091-8831884(+) (11)	NA	NA	NA	AT5G50090.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g50810.1	expressed protein	Medtr8g125270.1	"T10O24.15, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5030.1.A1_at	B	B1S	POPTR_0004s11950	POPTR_0004s11950 (7:251)	NA	NA	NA	NA	AT5G39210.1	chlororespiratory reduction 7 	NA	NA	AC231342_21.1	hypothetical protein AC231342.3 99751-101577 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50307.1.A1_at	B	B1S	POPTR_0006s05660	POPTR_0006s05660 (5:259)	NA	NA	NA	NA	AT2G42260.1	uv-b-insensitive 4 	LOC_Os04g39670.1	expressed protein	Medtr7g111230.1	UVI4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50333.2.A1_at	B	B1S	POPTR_0010s24640	POPTR_0010s24640 (0:694)	NA	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5034.1.A1_at	B	B1S	POPTR_0001s46470	POPTR_0001s46470 (5:218)	scaffold_1:46838708-46839110(+) (11)	NA	NA	NA	AT1G07090.1	Protein of unknown function (DUF640) 	LOC_Os02g56610.1	"DUF640 domain containing protein, putative, expressed"	Medtr5g080780.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5036.3.A1_at	B	B1S	POPTR_0015s14930	POPTR_0015s14930 (6:519)	NA	NA	NA	NA	AT3G58480.1	calmodulin-binding family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50379.1.A1_at	B	B2S	POPTR_0001s29450	POPTR_0001s29450 (1:533)//POPTR_0001s29440 (0:473)	NA	NA	Q9NX01	Thioredoxin-like protein 4B	AT3G24730.1	"mRNA splicing factor, thioredoxin-like U5 snRNP "	LOC_Os11g19220.1	"mitosis protein dim1, putative, expressed"	Medtr3g133440.1	Thioredoxin fold 	GO:0007067|mitosis	NA	GO:0005681|spliceosomal complex
PtpAffx.5038.1.S1_at	B	B1S	POPTR_0016s02090	POPTR_0016s02090 (8:452)	NA	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT3G22260.3	Cysteine proteinases superfamily protein 	LOC_Os02g07210.4	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50394.1.A1_at	B	B1S	POPTR_0010s12770	POPTR_0010s12770 (8:588)	NA	NA	Q9BVG9	Phosphatidylserine synthase 2	AT1G15110.1	phosphatidyl serine synthase family protein 	LOC_Os01g02890.1	"phosphatidylserine synthase, putative"	NA	NA	GO:0006659|phosphatidylserine biosynthetic process	NA	NA
PtpAffx.50397.1.A1_at	B	B1A	POPTR_0009s15940	POPTR_0009s15940 (8:224)	scaffold_9:12232964-12233463(+) (11)	NA	Q9ZS34	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os01g16020.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50410.1.A1_at	B	B1S	POPTR_0011s11990	POPTR_0011s11990 (5:234)	scaffold_11:14773997-14774534(-) (9)	NA	NA	NA	AT1G53040.2	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g100710.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50439.1.A1_at	B	B1S	POPTR_0268s00220	POPTR_0268s00220 (4:450)	scaffold_18:12341975-12342528(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5045.1.A1_at	B	B1A	POPTR_0008s21690	POPTR_0008s21690 (7:362)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g009150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50511.1.A1_at	B	B1S	POPTR_0015s14340	POPTR_0015s14340 (8:409)	scaffold_15:13986096-13986556(-) (10)	NA	O49663	Zinc finger A20 and AN1 domain-containing stress-associated protein 9	AT4G22820.2	A20/AN1-like zinc finger family protein 	LOC_Os03g57890.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g140780.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.50515.1.A1_at	B	B1S	POPTR_0012s08230	POPTR_0012s08230 (2:308)	NA	NA	Q9XFS9	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic"	AT5G62790.2	1-deoxy-D-xylulose 5-phosphate reductoisomerase 	LOC_Os01g01710.1	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed"	Medtr8g125620.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase; ; 	GO:0055114|oxidation reduction||GO:0008299|isoprenoid biosynthetic process	GO:0030604|1-deoxy-D-xylulose-5-phosphate reductoisomerase activity||GO:0046872|metal ion binding	NA
PtpAffx.50541.1.A1_at	B	B2S	POPTR_0010s11590	POPTR_0010s11600 (3:2553)//POPTR_0010s11590 (5:230)	scaffold_10:11794427-11797959(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50543.1.A1_at	B	B1S	POPTR_0017s01370	POPTR_0017s01370 (6:202)	scaffold_17:949114-949477(-) (10)	NA	Q66GI4	"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial"	AT2G32230.1	proteinaceous RNase P 1 	LOC_Os02g17360.2	"PPR repeat domain containing protein, putative, expressed"	Medtr2g122420.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50562.2.A1_at	B	B1S	POPTR_0009s04490	POPTR_0009s04490 (7:328)	scaffold_187:27219-27645(+) (9)//scaffold_9:4837109-4837535(-) (9)	NA	NA	NA	AT5G52370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g27960.1	expressed protein	Medtr2g117430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50702.1.A1_at	B	B1S	POPTR_0004s18270	POPTR_0004s18270 (2:226)	NA	NA	P93768	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G20200.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os09g37000.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.50719.1.S1_at	B	B1S	POPTR_0008s04670	POPTR_0008s04670 (1:99)	NA	NA	Q9LHJ9	Probable protein phosphatase 2C 38	AT3G12620.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr1g146560.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5076.1.A1_at	B	B1S	POPTR_0014s14380	POPTR_0014s14380 (8:534)	scaffold_14:10534428-10535201(-) (10)	NA	P47082	Vacuolar amino acid transporter 1	AT5G16740.1	Transmembrane amino acid transporter family protein 	LOC_Os11g19240.1	"transmembrane amino acid transporter protein, putative"	Medtr3g104200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50770.1.S1_a_at	B	B1S	POPTR_0004s08000	POPTR_0004s08000 (7:156)	NA	NA	A4IGK4	RNA-binding protein 5	AT3G54230.2	suppressor of abi3-5 	LOC_Os02g07070.1	"RNA recognition motif family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.5079.1.S1_at	B	B1S	POPTR_0005s02350	POPTR_0005s02350 (8:446)	scaffold_5:1521369-1521916(-) (11)	NA	Q9M8J3	Protein FAR1-RELATED SEQUENCE 7	AT3G06250.1	FAR1-related sequence 7 	LOC_Os03g50900.1	"transposon protein, putative, unclassified, expressed"	Medtr2g026200.1	"FAR1; Zinc finger, SWIM-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50810.1.S1_at	B	B1S	POPTR_0016s05620	POPTR_0016s05620 (4:127)	scaffold_16:3541352-3541708(+) (9)	NA	NA	NA	AT3G57450.1	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g52410.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5084.1.S1_at	B	B1S	POPTR_0002s12040	POPTR_0002s12040 (3:100)	NA	NA	Q5I7K3	40S ribosomal protein S29	AT4G33865.1	Ribosomal protein S14p/S29e family protein 	LOC_Os12g32380.1	"40S ribosomal protein S29, putative, expressed"	Medtr5g005230.1	Ribosomal protein S14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.50880.1.S1_at	B	B1S	POPTR_0001s13470	POPTR_0001s13470 (8:212)	NA	NA	A5UMN6	5-methylthioadenosine/S-adenosylhomocysteine deaminase	NA	NA	LOC_Os12g28270.2	"amidohydrolase, putative, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
PtpAffx.5096.1.S1_at	B	B1S	POPTR_0010s14080	POPTR_0010s14080 (8:591)	scaffold_10:13777863-13778619(-) (11)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT3G25690.2	Hydroxyproline-rich glycoprotein family protein 	LOC_Os12g01449.1	"chloroplast unusual positioning protein, putative, expressed"	Medtr5g069490.1	"chloroplast unusual positioning 1B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50971.1.A1_at	B	B1S	POPTR_0010s25930	POPTR_0010s25930 (8:745)	NA	NA	NA	NA	AT1G16840.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g13320.1	expressed protein	Medtr2g042680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5102.1.A1_at	B	B1S	POPTR_0005s22700	POPTR_0005s22700 (0:197)	NA	NA	NA	NA	AT2G30880.1	Pleckstrin homology (PH) domain-containing protein 	LOC_Os03g46340.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g098210.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51038.1.S1_at	B	B1S	POPTR_0010s00530	POPTR_0010s00530 (7:552)	NA	NA	Q54XC1	Cytosolic purine 5'-nucleotidase	AT5G48960.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os01g14810.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr8g133970.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51039.1.S1_at	B	B1S	POPTR_0009s05480	POPTR_0009s05480 (8:517)	NA	NA	Q99615	DnaJ homolog subfamily C member 7	AT5G12430.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.51059.1.A1_at	B	B1S	POPTR_0005s12720	POPTR_0005s12720 (2:86)	NA	NA	Q9LVQ8	Probable protein phosphatase 2C 80	AT5G66720.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51120.1.S1_at	B	B2S	POPTR_0006s13510	POPTR_0308s00200 (8:777)//POPTR_0006s13510 (8:768)	scaffold_6:10728599-10729327(+) (9)	NA	Q0JHZ2	Zinc finger CCCH domain-containing protein 11	AT2G20280.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g61830.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr6g089260.1	Leucine-rich repeat 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.51252.1.S1_at	B	B1S	POPTR_0002s08010	POPTR_0002s08010 (7:333)	scaffold_2:5546174-5546567(+) (11)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5126.1.A1_at	B	B2S	POPTR_0014s05470	POPTR_0014s05490 (0:1)//POPTR_0014s05470 (0:1)	scaffold_14:4108940-4109082(+) (11)	NA	P42825	Chaperone protein dnaJ 2	AT5G22060.1	DNAJ homologue 2 	LOC_Os04g46390.2	"chaperone protein dnaJ, putative, expressed"	Medtr8g006170.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	NA
PtpAffx.51307.2.S1_at	B	B1S	POPTR_0002s22980	POPTR_0002s22980 (8:111)	NA	NA	Q8K370	Acyl-CoA dehydrogenase family member 10	AT3G06810.1	acyl-CoA dehydrogenase-related 	LOC_Os07g47820.1	"acyl-CoA dehydrogenase family member 10, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.51480.1.S1_a_at	B	B1S	POPTR_0014s04660	POPTR_0014s04660 (2:56)	scaffold_14:3561538-3561860(+) (11)	NA	Q8BYR1	Leucine carboxyl methyltransferase 2	AT1G02100.1	Leucine carboxyl methyltransferase 	LOC_Os06g04820.1	"leucine carboxyl methyltransferase 1, putative, expressed"	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.51517.1.A1_at	B	B1A	POPTR_0009s10130	POPTR_0009s10130 (7:177)	scaffold_9:8791119-8791340(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51562.1.S1_at	B	B1S	POPTR_0019s09460	POPTR_0019s09460 (5:147)	NA	NA	Q5Q995	Protein KRTCAP2 homolog	AT1G77350.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g40780.1	"keratinocytes-associated protein 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5159.2.S1_at	B	B1S	POPTR_0017s08140	POPTR_0017s08140 (0:2079)	NA	NA	P49098	Cytochrome b5	AT2G32720.1	cytochrome B5 isoform B 	LOC_Os05g01820.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr4g023560.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.5159.3.S1_at	B	B1S	POPTR_0017s08140	POPTR_0017s08140 (1:305)	NA	NA	P49098	Cytochrome b5	AT2G32720.1	cytochrome B5 isoform B 	LOC_Os05g01820.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr4g023560.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.5161.1.A1_at	B	B1S	POPTR_0002s23890	POPTR_0002s23890 (2:38)	scaffold_2:21369711-21369920(+) (11)	NA	Q8GZB6	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4"	AT5G13960.1	SU(VAR)3-9 homolog 4 	LOC_Os01g70220.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr7g097130.1	SRA-YDG; Pre-SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51614.3.S1_at	B	B1S	POPTR_0017s12390	POPTR_0017s12390 (1:372)	scaffold_17:12566980-12567299(+) (10)	NA	NA	NA	AT3G29180.2	Protein of unknown function (DUF1336) 	LOC_Os12g38850.3	"DUF1336 domain containing protein, expressed"	Medtr7g011080.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51742.2.A1_at	B	B1S	POPTR_0004s11790	POPTR_0004s11790 (5:654)	NA	NA	Q42290	Probable mitochondrial-processing peptidase subunit beta	AT3G02090.1	Insulinase (Peptidase family M16) protein 	LOC_Os03g11410.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.5175.1.A1_s_at	B	B1S	POPTR_0013s14960	POPTR_0013s14960 (8:31)	NA	NA	Q8S8P5	Probable WRKY transcription factor 33	AT2G38470.1	WRKY DNA-binding protein 33 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g082420.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.5176.1.A1_at	B	B1S	POPTR_0003s08980	POPTR_0003s08980 (6:435)	NA	NA	P54638	Acetylornithine deacetylase	AT4G17830.1	Peptidase M20/M25/M40 family protein 	LOC_Os02g46520.1	"hydrolase, putative, expressed"	Medtr5g014590.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.51795.1.S1_at	B	B1S	POPTR_0007s11460	POPTR_0007s11460 (7:513)	NA	NA	Q9FKZ3	LOB domain-containing protein 36	AT5G66870.1	ASYMMETRIC LEAVES 2-like 1 	LOC_Os03g41600.1	"DUF260 domain containing protein, putative"	Medtr5g017910.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5191.1.A1_at	B	B1S	POPTR_0006s02740	POPTR_0006s02740 (8:902)	scaffold_6:1737704-1738638(+) (11)	NA	NA	NA	AT3G56810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g104760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51910.1.S1_at	B	B1S	POPTR_0013s01770	POPTR_0013s01770 (8:198)	NA	NA	O82631	F-actin-capping protein subunit alpha	AT3G05520.1	Subunits of heterodimeric actin filament capping protein Capz superfamily 	LOC_Os07g23200.1	"F-actin-capping protein subunit alpha, putative, expressed"	Medtr7g138500.1	"F-actin capping protein, alpha subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51918.1.S1_at	B	B1S	POPTR_0011s07290	POPTR_0011s07290 (7:599)	NA	NA	NA	NA	AT1G29240.1	Protein of unknown function (DUF688) 	LOC_Os01g55410.1	expressed protein	Medtr1g068290.1	Protein of unknown function DUF688 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.51937.1.A1_at	B	B1S	POPTR_0005s15810	POPTR_0005s15810 (8:812)	NA	NA	Q6J163	Auxin-induced protein 5NG4	AT4G08300.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097580.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.52013.2.S1_at	B	B1S	POPTR_0016s05930	POPTR_0016s05930 (8:500)	NA	NA	NA	NA	AT5G06700.1	Plant protein of unknown function (DUF828) 	LOC_Os06g10560.1	"leaf senescence related protein, putative, expressed"	Medtr7g112170.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52019.1.A1_at	B	B1S	POPTR_0002s04860	POPTR_0002s04860 (5:533)	scaffold_2:3076199-3076767(-) (9)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5202.1.S1_at	B	B1S	POPTR_0001s47340	POPTR_0001s47340 (4:220)	scaffold_1:47569685-47570113(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g104410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52052.1.A1_at	B	B1S	POPTR_0005s14220	POPTR_0005s14220 (8:341)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52100.1.A1_at	B	B1S	POPTR_0018s02190	POPTR_0018s02190 (5:314)	NA	NA	D2XNQ8	Flotillin-like protein 1	AT5G25260.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os10g34040.1	"nodulin, putative, expressed"	Medtr3g137810.1	"nodulin, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52112.1.A1_at	B	B1S	POPTR_0012s02310	POPTR_0012s02310 (7:878)	NA	NA	NA	NA	AT5G24280.1	gamma-irradiation and mitomycin c induced 1 	LOC_Os01g13404.1	"ATP binding protein, putative, expressed"	Medtr1g009120.1	"ATP binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52127.1.S1_at	B	B1S	POPTR_0011s09740	POPTR_0011s09740 (8:483)	NA	NA	Q9LUD7	Putative callose synthase 8	AT3G14570.1	glucan synthase-like 4 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.52162.1.A1_at	B	B1S	POPTR_0014s00370	POPTR_0014s00370 (4:326)	NA	NA	P0C8Y0	Camelliol C synthase	AT1G78955.1	camelliol C synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.52176.2.S1_at	B	B1S	POPTR_0003s07830	POPTR_0003s07830 (6:1030)	NA	NA	Q8L7W2	Nudix hydrolase 8	AT5G47240.1	nudix hydrolase homolog 8 	LOC_Os04g46280.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g105240.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.52189.1.S1_at	B	B1S	POPTR_0007s03490	POPTR_0007s03490 (8:382)	NA	NA	Q8LRK9	Transcription initiation factor TFIID subunit 1-A	AT1G32750.1	HAC13 protein (HAC13) 	LOC_Os06g43790.1	"transcription initiation factor TFIID subunit 1, putative, expressed"	Medtr5g026850.1	Ubiquitin; TAFII-230 TBP-binding 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.52207.1.A1_at	B	B1S	POPTR_0013s05590	POPTR_0013s05590 (6:236)	NA	NA	NA	NA	AT2G23840.1	HNH endonuclease 	LOC_Os07g07480.1	"HNH endonuclease domain-containing protein, putative, expressed"	Medtr7g100320.1	HNH nuclease 	NA	GO:0004519|endonuclease activity||GO:0003676|nucleic acid binding	NA
PtpAffx.52241.1.A1_at	B	B1S	POPTR_0004s14280	POPTR_0004s14280 (1:121)	scaffold_4:14737470-14737860(-) (10)	NA	Q949R4	"4,5-DOPA dioxygenase extradiol-like protein"	AT4G15093.1	catalytic LigB subunit of aromatic ring-opening dioxygenase family 	LOC_Os01g65680.1	"4,5-DOPA dioxygenase extradiol, putative, expressed"	Medtr6g070870.1	"Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B "	GO:0006725|cellular aromatic compound metabolic process	GO:0008198|ferrous iron binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.52260.1.A1_at	B	B1S	POPTR_0006s11640	POPTR_0006s11640 (4:214)	NA	NA	NA	NA	AT5G03670.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36420.1); Has 700 Blast hits to 624 proteins in 104 species: Archae - 0; Bacteria - 18; Metazoa - 333; Fungi - 60; Plants - 73; Viruses - 24; Other Eukaryotes - 192 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5227.1.A1_at	B	B1S	POPTR_0003s05940	POPTR_0003s05940 (0:14)	scaffold_3:7305968-7306099(-) (11)	NA	Q8LBK6	"Monothiol glutaredoxin-S15, mitochondrial"	AT3G15660.2	glutaredoxin 4 	LOC_Os01g34620.9	"OsGrx_S15.1 - glutaredoxin subgroup II, expressed"	Medtr2g125790.1	Glutaredoxin-related protein; Glutaredoxin active site 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.52292.1.A1_at	B	B1S	POPTR_0004s21880	POPTR_0004s21880 (7:338)	NA	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT4G38180.1	FAR1-related sequence 5 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr5g106890.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.52311.1.A1_at	B	B1A	POPTR_0003s15850	POPTR_0003s15850 (4:151)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52330.1.A1_at	B	B1S	POPTR_0015s13180	POPTR_0015s13180 (8:497)	NA	NA	Q8GWP0	Transcription factor MYB39	AT3G61250.1	myb domain protein 17 	LOC_Os02g42870.1	"MYB family transcription factor, putative, expressed"	Medtr7g084550.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52331.1.A1_at	B	B1S	POPTR_0002s10500	POPTR_0002s10500 (5:517)	NA	NA	Q9SB51	Ubiquitin carboxyl-terminal hydrolase 16	AT4G24560.1	ubiquitin-specific protease 16 	LOC_Os08g37350.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr3g149210.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.52337.1.A1_at	B	B1S	POPTR_0015s11530	POPTR_0015s11530 (8:280)	NA	NA	Q11204	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2"	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.5234.1.A1_at	B	B1S	POPTR_0002s11460	POPTR_0002s11460 (4:300)	scaffold_2:8501609-8502003(-) (10)	NA	Q00257	1-aminocyclopropane-1-carboxylate synthase CMA101	AT4G37770.1	1-amino-cyclopropane-1-carboxylate synthase 8 	LOC_Os03g51740.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g015160.1	Aminotransferases class-I pyridoxal-phosphate-binding site; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.52381.1.S1_at	B	B1S	POPTR_0015s01110	POPTR_0015s01110 (5:275)	NA	NA	Q7YR39	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	AT1G32490.1	RNA helicase family protein 	LOC_Os08g24760.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.5239.1.S1_at	B	B1S	POPTR_0005s06770	POPTR_0005s06770 (5:623)	scaffold_5:4540494-4541332(+) (9)	NA	A2BGR3	DNA excision repair protein ERCC-6-like	AT5G63950.1	chromatin remodeling 24 	LOC_Os04g59624.2	"SNF2 family N-terminal domain containing protein, expressed"	Medtr4g143200.1	"DNA excision repair protein ERCC-6-like, related "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.5239.2.S1_at	B	B1S	POPTR_0005s06770	POPTR_0005s06770 (6:452)	NA	NA	A2BGR3	DNA excision repair protein ERCC-6-like	AT5G63950.1	chromatin remodeling 24 	LOC_Os04g59624.2	"SNF2 family N-terminal domain containing protein, expressed"	Medtr4g143200.1	"DNA excision repair protein ERCC-6-like, related "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.5257.1.A1_at	B	B1S	POPTR_0001s06990	POPTR_0001s06990 (8:678)	NA	NA	Q9ZVJ3	65-kDa microtubule-associated protein 5	AT2G38720.1	microtubule-associated protein 65-5 	LOC_Os05g33890.1	"microtubule associated protein, putative, expressed"	Medtr8g044460.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52603.2.A1_at	B	B1S	POPTR_0010s25640	POPTR_0010s25640 (0:1864)	NA	NA	Q06450	"ATP synthase subunit epsilon, mitochondrial"	AT1G51650.1	"ATP synthase epsilon chain, mitochondrial "	LOC_Os08g15170.1	"ATP synthase epsilon chain, mitochondrial, putative, expressed"	Medtr5g043990.1	Mitochondrial ATP synthase epsilon chain 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0000275|""mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"""
PtpAffx.52635.1.A1_a_at	B	B1S	POPTR_0019s00760	POPTR_0019s00760 (8:335)	scaffold_19:508546-509191(-) (10)	NA	Q9FFP8	Defensin-like protein 6	AT5G63660.1	Scorpion toxin-like knottin superfamily protein 	LOC_Os03g03810.1	"DEF8 - Defensin and Defensin-like DEFL family, expressed"	AC229689_3.1	Knottin AC229689.5 15478-17532 E EGN_Mt090430 200	GO:0006952|defense response	NA	NA
PtpAffx.52716.1.A1_at	B	B1S	POPTR_0004s09350	POPTR_0004s09350 (7:80)	NA	NA	Q9LF46	2-hydroxyacyl-CoA lyase	AT5G17380.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os01g32080.1	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr3g150570.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.5275.1.A1_at	B	B1S	POPTR_0006s08830	POPTR_0006s08830 (8:201)	NA	NA	Q0V4C4	Hsp70 nucleotide exchange factor FES1	AT3G09350.1	Fes1A 	LOC_Os03g60780.1	"armadillo/beta-catenin-like repeat containing protein, expressed"	Medtr4g019550.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5281.2.S1_at	B	B1S	POPTR_0016s09070	POPTR_0016s09070 (6:286)	NA	NA	P49299	"Citrate synthase, glyoxysomal"	AT3G58750.1	citrate synthase 2 	LOC_Os02g13840.1	"citrate synthase, putative, expressed"	Medtr5g099240.1	Citrate synthase 	GO:0044262|cellular carbohydrate metabolic process	"GO:0046912|""transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer"""	NA
PtpAffx.5287.3.S1_at	B	B2S	POPTR_1611s00200	POPTR_1611s00200 (5:900)//POPTR_0008s15350 (4:828)	NA	NA	NA	NA	AT2G32090.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os03g45720.1	"glyoxalase family protein, putative, expressed"	Medtr5g006460.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5291.2.S1_at	B	B1S	POPTR_0012s11480	POPTR_0012s11480 (8:1673)	NA	NA	O14327	Polyadenylate-binding protein 2	AT5G65260.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g087160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.52959.1.S1_at	B	B1S	POPTR_0016s10060	POPTR_0016s10060 (8:448)	NA	NA	NA	NA	AT3G54000.1	CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr7g071270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5296.1.A1_at	B	B1S	POPTR_0011s00700	POPTR_0011s00700 (5:511)	NA	NA	Q9D099	Alkaline ceramidase 3	AT4G22330.1	Alkaline phytoceramidase (aPHC) 	LOC_Os03g49180.1	"alkaline phytoceramidase, putative, expressed"	Medtr2g029600.1	Alkaline phytoceramidase 	GO:0006672|ceramide metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	GO:0005789|endoplasmic reticulum membrane||GO:0016021|integral to membrane||GO:0000139|Golgi membrane||GO:0071212|subsynaptic reticulum
PtpAffx.52988.1.S1_at	B	B1S	POPTR_0009s12360	POPTR_0009s12360 (8:384)	NA	NA	Q9SIW1	BEL1-like homeodomain protein 7	AT2G16400.1	BEL1-like homeodomain 7 	LOC_Os03g47740.3	"homeodomain protein, putative, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.53010.1.A1_at	B	B1S	POPTR_0001s03370	POPTR_0001s03370 (4:225)	scaffold_1:2746160-2746567(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53039.1.S1_at	B	B1S	POPTR_0007s11280	POPTR_0007s11280 (7:483)	NA	NA	NA	NA	AT4G37080.3	"Protein of unknown function, DUF547 "	LOC_Os09g28850.1	expressed protein	Medtr8g097130.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53105.1.S1_at	B	B1S	POPTR_0002s18840	POPTR_0002s18840 (8:530)	NA	NA	NA	NA	AT1G48300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os05g04620.1	expressed protein	Medtr8g133810.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53146.1.S1_at	B	B1A	POPTR_0012s12230	POPTR_0012s12230 (8:500)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5323.3.S1_at	B	B2S	POPTR_0009s06740	POPTR_0009s06770 (0:372)//POPTR_0009s06740 (0:115)	NA	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37980.1	elicitor-activated gene 3-1 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.5326.3.S1_at	B	B1S	POPTR_0001s14910	POPTR_0001s14910 (7:223)	NA	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G15950.1	cinnamoyl coa reductase 1 	LOC_Os08g34280.1	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.53389.1.S1_a_at	B	B1S	POPTR_0012s05920	POPTR_0012s05920 (5:209)	scaffold_12:5824813-5826283(-) (9)	NA	NA	NA	AT1G18610.1	Galactose oxidase/kelch repeat superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53454.1.S1_at	B	B2S	POPTR_0012s11220	POPTR_0012s11220 (8:567)//POPTR_0011s10890 (5:566)	NA	NA	O65355	Gamma-glutamyl hydrolase	AT1G78680.1	gamma-glutamyl hydrolase 2 	LOC_Os05g44130.1	"gamma-glutamyl hydrolase precursor, putative, expressed"	Medtr2g091580.1	Peptidase C26 	GO:0006541|glutamine metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.53539.2.A1_at	B	B1S	POPTR_0007s05945	POPTR_0007s05945 (0:41)	NA	NA	Q42602	Cytochrome P450 89A2	AT1G64950.1	"cytochrome P450, family 89, subfamily A, polypeptide 5 "	LOC_Os10g37050.1	"transposon protein, putative, unclassified, expressed"	Medtr2g010350.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.5364.2.A1_at	B	B1S	POPTR_0003s06750	POPTR_0003s06750 (0:1788)	NA	NA	Q94AU2	25.3 kDa vesicle transport protein	AT1G11890.1	Synaptobrevin family protein 	LOC_Os03g57760.2	"25.3 kDa vesicle transport protein, putative, expressed"	Medtr8g025760.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.53711.3.S1_at	B	B1S	POPTR_0011s11380	POPTR_0011s11380 (8:323)	NA	NA	Q13895	Bystin	AT1G31660.1	CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). 	LOC_Os09g18320.1	"bystin, putative, expressed"	Medtr5g026110.1	Bystin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53712.1.S1_at	B	B1S	POPTR_0008s10970	POPTR_0008s10970 (7:1031)	NA	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT3G25560.1	NSP-interacting kinase 2 	LOC_Os06g16330.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.53822.2.S1_at	B	B2S	POPTR_0007s06690	POPTR_0007s06690 (8:249)//POPTR_0005s08710 (2:247)	NA	NA	Q9C5J9	Uncharacterized GTP-binding protein At5g64813	AT5G64813.1	Ras-related small GTP-binding family protein 	LOC_Os10g04580.1	"ras-related protein, putative, expressed"	Medtr4g140980.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.53874.1.S1_at	B	B1S	POPTR_0011s09420	POPTR_0011s09420 (5:210)	NA	NA	Q6QNU4	DNA damage-binding protein 1	AT4G05420.1	damaged DNA binding protein 1A 	LOC_Os05g51480.2	"cleavage and polyadenylation specificity factor, putative, expressed"	Medtr4g137930.1	"CPSF A subunit, C-terminal; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53884.1.A1_at	B	B1S	POPTR_0047s00260	POPTR_0047s00260 (0:53)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53899.1.S1_at	B	B1S	POPTR_0017s00670	POPTR_0017s00670 (8:805)	NA	NA	Q39173	Probable NADP-dependent oxidoreductase P2	AT5G16990.1	Zinc-binding dehydrogenase family protein 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53925.3.S1_at	B	B1S	POPTR_0008s07710	POPTR_0008s07710 (7:498)	NA	NA	Q2T9S4	Phosphoglycolate phosphatase	AT5G36700.4	2-phosphoglycolate phosphatase 1 	LOC_Os04g41340.1	"4-nitrophenylphosphatase, putative, expressed"	Medtr7g090150.2	"HAD-superfamily hydrolase, subfamily IIA "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.53932.1.A1_at	B	B10A	POPTR_0019s03290	POPTR_0019s01320 (5:458)//POPTR_0019s03350 (4:458)//POPTR_0019s03300 (7:458)//POPTR_0019s03290 (8:458)//POPTR_0121s00250 (4:458)//POPTR_0408s00200 (5:458)//POPTR_0019s06190 (6:458)//POPTR_0019s06220 (7:450)//POPTR_0019s06170 (6:449)//POPTR_0003s02120 (7:440)	NA	NA	P59287	"Casbene synthase, chloroplastic"	AT5G23960.2	terpene synthase 21 	LOC_Os08g04500.2	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.5397.1.A1_at	B	B1S	POPTR_0018s14290	POPTR_0018s14290 (1:348)	NA	NA	Q8LD27	Proteasome subunit beta type-6	AT4G31300.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os02g53060.1	"peptidase, T1 family, putative, expressed"	Medtr3g132980.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.54013.1.S1_at	B	B2S	POPTR_0003s20780	POPTR_0003s20780 (4:256)//POPTR_0003s20790 (0:9)	scaffold_3:19212435-19212842(+) (10)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os03g59760.2	"RING finger protein 126, putative, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54055.1.S1_at	B	B1S	POPTR_0003s13640	POPTR_0003s13640 (8:1271)	NA	NA	Q9M373	Arabinogalactan peptide 20	AT3G61640.1	arabinogalactan protein 20 	LOC_Os01g46850.1	expressed protein	Medtr3g124660.1	Protein of unknown function DUF1070 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5407.1.A1_at	B	B1S	POPTR_0003s05780	POPTR_0003s05780 (0:303)	NA	NA	Q8R431	Monoglyceride lipase	AT1G52760.1	lysophospholipase 2 	LOC_Os02g11720.1	"lipase, putative, expressed"	Medtr8g129890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5409.1.A1_a_at	B	B1S	POPTR_0010s12080	POPTR_0010s12080 (8:31)	NA	NA	Q6EI05	DELLA protein GAIP-B	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g148270.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54176.1.S1_at	B	B1S	POPTR_0001s37340	POPTR_0001s37340 (8:399)	scaffold_1:36315259-36323671(-) (10)	NA	Q9LK64	ABC transporter C family member 3	AT3G13080.1	multidrug resistance-associated protein 3 	LOC_Os01g07870.1	"ABC transporter family protein, putative, expressed"	Medtr5g034390.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.54181.1.S1_at	B	B1S	POPTR_0002s02450	POPTR_0002s02450 (8:147)	NA	NA	Q84WL9	AP-2 complex subunit sigma	AT1G47830.1	SNARE-like superfamily protein 	LOC_Os12g10560.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr1g031130.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.54211.1.S1_at	B	B1S	POPTR_0041s00210	POPTR_0041s00210 (2:117)	scaffold_41:224903-225415(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54313.2.S1_at	B	B1S	POPTR_0011s16200	POPTR_0011s16200 (8:387)	NA	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.5435.1.S1_at	B	B1S	POPTR_0005s07750	POPTR_0005s07750 (8:551)	NA	NA	NA	NA	AT4G39860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os02g36500.1	expressed protein	Medtr3g101680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54389.3.S1_a_at	B	B1S	POPTR_0014s14920	POPTR_0014s14920 (7:148)	NA	NA	Q9VF08	Mitochondrial import inner membrane translocase subunit Tim16	AT3G59280.1	"Protein Transporter, Pam16 "	LOC_Os10g33910.1	"mitochondrial import inner membrane translocase subunit Tim16, putative, expressed"	Medtr1g124900.1	Protein of unknown function UPF0108 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5439.1.S1_at	B	B1S	POPTR_0006s19770	POPTR_0006s19770 (7:305)	scaffold_6:18784479-18784876(+) (9)	NA	Q9SK27	Early nodulin-like protein 1	AT4G31840.1	early nodulin-like protein 15 	LOC_Os02g06670.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g138410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.54419.1.S1_at	B	B1S	POPTR_0003s09990	POPTR_0003s09990 (8:456)	NA	NA	Q3T130	Transmembrane protein 45B	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os11g40570.3	"plant viral response family protein, putative, expressed"	Medtr5g027370.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54421.1.S1_at	B	B1S	POPTR_0009s02640	POPTR_0009s02640 (8:463)	scaffold_9:3409607-3410128(+) (9)	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54430.1.S1_at	B	B1S	POPTR_0012s09060	POPTR_0012s09060 (8:208)	NA	NA	NA	NA	AT5G63040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g50830.1	expressed protein	Medtr3g114280.1	"T1N15.7, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54440.1.A1_at	B	B1S	POPTR_0010s08230	POPTR_0010s08230 (6:768)	NA	NA	Q96303	Inorganic phosphate transporter 1-4	AT2G38940.1	phosphate transporter 1;4 	LOC_Os03g05610.1	"inorganic phosphate transporter, putative, expressed"	Medtr1g089540.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.54513.1.S1_at	B	B1S	POPTR_0010s06730	POPTR_0010s06730 (6:339)	NA	NA	A2A4P0	ATP-dependent RNA helicase DHX8	AT1G27900.1	RNA helicase family protein 	LOC_Os11g20554.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.54520.1.S1_at	B	B1A	POPTR_0002s06810	POPTR_0002s06810 (5:454)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54577.1.S1_at	B	B1S	POPTR_0006s09920	POPTR_0006s09920 (5:129)	NA	NA	Q41870	Aquaporin PIP1-1	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os07g26640.1	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.54580.1.S1_at	B	B1S	POPTR_0006s17690	POPTR_0006s17690 (8:2177)	NA	NA	Q54NM9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3	AT5G19690.1	staurosporin and temperature sensitive 3-like A 	LOC_Os05g44360.1	"oligosaccharyl transferase, putative, expressed"	Medtr1g143540.1	"Oligosaccharyl transferase, STT3 subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54631.1.S1_at	B	B2S	POPTR_0010s25660	POPTR_0010s25650 (2:291)//POPTR_0010s25660 (3:215)	scaffold_10:21229959-21230935(+) (11)	NA	NA	NA	AT1G73090.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages. 	NA	NA	Medtr4g023100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5464.1.A1_at	B	B2S	POPTR_0006s09210	POPTR_0006s09210 (5:209)//POPTR_0006s09220 (1:38)	scaffold_6:6794770-6795260(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54646.1.S1_at	B	B1S	POPTR_0004s18090	POPTR_0004s18090 (8:236)	NA	NA	P35133	Ubiquitin-conjugating enzyme E2 10	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os02g02830.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g098530.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.54650.1.S1_at	B	B1S	POPTR_0003s02680	POPTR_0003s02680 (8:451)	NA	NA	Q9M7M1	Ethylene receptor	AT1G66340.1	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.5468.1.A1_s_at	B	B1A	POPTR_0001s37630	POPTR_0001s37630 (6:95)	scaffold_1:36593549-36593662(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54688.1.A1_at	B	B1S	POPTR_0001s35240	POPTR_0001s35240 (0:126)	NA	NA	NA	NA	AT3G27670.1	ARM repeat superfamily protein 	LOC_Os01g07490.1	"RST1, putative, expressed"	Medtr6g005020.1	"RST1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5472.2.S1_a_at	B	B1S	POPTR_0001s13750	POPTR_0001s13750 (0:18)	scaffold_1:10831661-10831845(+) (11)	NA	NA	NA	AT1G27330.1	Ribosome associated membrane protein RAMP4 	LOC_Os11g41875.2	"membrane protein, putative, expressed"	Medtr2g030550.1	Ribosome associated membrane RAMP4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54732.1.A1_at	B	B1S	POPTR_0017s11320	POPTR_0017s11320 (0:324)	NA	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.5474.1.A1_at	B	B1S	POPTR_0001s27830	POPTR_0001s27830 (0:450)	NA	NA	P34091	60S ribosomal protein L6	AT1G74050.1	Ribosomal protein L6 family protein 	LOC_Os04g39700.1	"60S ribosomal protein L6, putative, expressed"	Medtr3g145090.1	"Ribosomal protein L6E; Ribosomal protein L6, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.54754.1.A1_at	B	B1S	POPTR_0004s00240	POPTR_0004s00240 (8:226)	NA	NA	Q9VR91	Probable E3 ubiquitin-protein ligase HERC2	AT5G60870.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os09g38755.1	"E3 ubiquitin-protein ligase HERC2, putative, expressed"	Medtr7g047420.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54756.1.S1_at	B	B1S	POPTR_0005s10110	POPTR_0005s10110 (6:203)	NA	NA	NA	NA	AT1G79060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 3399 Blast hits to 980 proteins in 195 species: Archae - 0; Bacteria - 839; Metazoa - 390; Fungi - 256; Plants - 154; Viruses - 9; Other Eukaryotes - 1751 (source: NCBI BLink). 	LOC_Os06g46250.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54760.1.A1_at	B	B1S	POPTR_0030s00360	POPTR_0030s00360 (5:798)	NA	NA	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os03g53650.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.54767.1.A1_at	B	B1S	POPTR_0005s15910	POPTR_0005s15910 (3:277)	NA	NA	P51075	Chalcone synthase	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	GO:0009058|biosynthetic process	GO:0008415|acyltransferase activity	NA
PtpAffx.54768.1.A1_at	B	B1S	POPTR_0006s13750	POPTR_0006s13750 (0:0)	NA	NA	Q40134	DNA repair protein RAD51 homolog	AT5G20850.1	RAS associated with diabetes protein 51 	LOC_Os11g40150.1	"DNA repair protein Rad51, putative, expressed"	Medtr8g133290.1	"AAA ATPase; Rad51, N-terminal "	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.54769.1.A1_at	B	B2S	POPTR_0001s19240	POPTR_0006s25660 (0:30)//POPTR_0001s19240 (0:25)	NA	NA	Q9LU14	GDSL esterase/lipase APG	AT3G16370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os06g05550.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g121910.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.54776.1.A1_at	B	B1S	POPTR_0001s13130	POPTR_0001s13130 (7:418)	NA	NA	NA	NA	AT1G28100.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os10g35644.1	expressed protein	AC235677_28.1	hypothetical protein AC235677.1 126634-128282 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54780.1.A1_at	B	B1S	POPTR_0004s17490	POPTR_0004s17490 (1:491)	NA	NA	NA	NA	AT4G30150.1	"CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink). "	LOC_Os03g10600.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54781.1.A1_at	B	B1S	POPTR_0010s06470	POPTR_0010s06470 (6:397)	NA	NA	Q9LU91	F-box protein SKIP14	AT3G26000.1	Ribonuclease inhibitor 	LOC_Os04g40910.1	"OsFBX146 - F-box domain containing protein, expressed"	Medtr4g157480.1	"4Fe-4S ferredoxin, iron-sulfur binding; Cyclin-like F-box "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54782.1.A1_at	B	B1S	POPTR_0001s05710	POPTR_0001s05710 (0:322)	NA	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT3G63530.2	RING/U-box superfamily protein 	LOC_Os03g07790.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g087360.1	"Zinc finger, RING-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54807.1.S1_at	B	B1S	POPTR_0014s08580	POPTR_0014s08580 (7:2109)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54825.1.S1_at	B	B1S	POPTR_0005s24950	POPTR_0005s24950 (8:431)	NA	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G75240.1	homeobox protein 33 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g020380.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Zinc finger, C2H2-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54847.1.S1_at	B	B1S	POPTR_0006s29460	POPTR_0006s29460 (0:305)	NA	NA	Q9M086	DDB1- and CUL4-associated factor homolog 1	AT4G31160.1	DDB1-CUL4 associated factor 1 	LOC_Os04g59460.1	expressed protein	Medtr3g135700.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54853.2.A1_at	B	B1S	POPTR_0010s11900	POPTR_0010s11900 (3:708)	scaffold_10:12027970-12031301(-) (10)	NA	NA	NA	AT1G23220.1	Dynein light chain type 1 family protein 	NA	NA	Medtr4g157520.1	"Dynein light chain, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54856.2.A1_at	B	B1A	POPTR_0011s01920	POPTR_0011s01920 (4:961)	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os11g41540.4	"disease resistance RPP8-like protein 3, putative, expressed"	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.5489.1.A1_at	B	B2S	POPTR_0012s13970	POPTR_0015s13940 (0:2803)//POPTR_0012s13970 (3:2041)	NA	NA	NA	NA	AT5G51880.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g02730.1	expressed protein	Medtr1g129750.1	"ABR017Cp, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54927.1.A1_at	B	B1S	POPTR_0010s04260	POPTR_0010s04260 (2:114)	scaffold_10:5274014-5274837(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5494.1.A1_at	B	B1S	POPTR_0014s10550	POPTR_0014s10550 (6:164)	scaffold_14:7858429-7858722(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54940.1.A1_at	B	B1S	POPTR_0005s20970	POPTR_0005s20970 (1:81)	scaffold_5:20074801-20075217(-) (11)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT1G21460.1	Nodulin MtN3 family protein 	LOC_Os01g65880.1	"nodulin MtN3 family protein, putative, expressed"	AC147714_1.1	MtN3 and saliva related transmembrane protein AC147714.8 37997-39514 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54951.1.A1_at	B	B1S	POPTR_0003s16620	POPTR_0003s16620 (3:149)	scaffold_3:16188564-16189056(-) (10)	NA	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os08g42080.1	"ACR5, putative, expressed"	Medtr7g022460.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.54973.1.A1_at	B	B1S	POPTR_0007s11990	POPTR_0007s11990 (7:60)	NA	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.55064.1.A1_at	B	B1S	POPTR_0001s06760	POPTR_0001s06760 (8:448)	NA	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5507.1.A1_at	B	B1S	POPTR_0084s00230	POPTR_0084s00230 (3:367)	NA	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.5514.3.A1_a_at	B	B1S	POPTR_0002s02780	POPTR_0002s02780 (8:372)	scaffold_2:1687365-1687842(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5514.7.A1_a_at	B	B1A	POPTR_0002s02780	POPTR_0002s02780 (7:302)	scaffold_2:1687566-1687952(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55411.1.S1_s_at	B	B1S	POPTR_0008s02090	POPTR_0008s02090 (8:137)	NA	NA	P46301	40S ribosomal protein S25	AT2G16360.1	Ribosomal protein S25 family protein 	LOC_Os09g39540.2	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5545.3.S1_at	B	B1S	POPTR_0002s10880	POPTR_0002s10880 (5:240)	NA	NA	Q38827	Auxin-responsive protein IAA9	AT5G65670.2	indole-3-acetic acid inducible 9 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g078700.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.55783.1.A1_at	B	B1S	POPTR_0017s00400	POPTR_0017s00400 (3:470)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5580.1.S1_at	B	B1S	POPTR_0008s03650	POPTR_0008s03650 (5:2068)	NA	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G04250.2	Cysteine proteinases superfamily protein 	LOC_Os03g64219.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g120470.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55815.1.A1_at	B	B1S	POPTR_0002s09930	POPTR_0002s09930 (8:232)	NA	NA	Q9ZPE4	F-box protein FBW2	AT4G08980.5	F-BOX WITH WD-40 2 	LOC_Os02g52130.9	"OsFBX61 - F-box domain containing protein, expressed"	Medtr5g073570.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55850.1.S1_at	B	B1S	POPTR_0011s09560	POPTR_0011s09560 (8:2404)	NA	NA	NA	NA	AT4G26630.2	DEK domain-containing chromatin associated protein 	LOC_Os03g40010.1	"DEK C terminal domain containing protein, expressed"	Medtr5g103320.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5588.1.A1_at	B	B2S	POPTR_0003s16980	POPTR_0003s16980 (5:545)//POPTR_0003s16990 (4:500)	NA	NA	Q9FZK1	F-box only protein 6	AT1G27340.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g69940.1	"OsFBX32 - F-box domain containing protein, expressed"	Medtr3g104000.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55937.1.S1_at	B	B1A	POPTR_0001s26120	POPTR_0001s26120 (3:103)	scaffold_1:25198850-25199046(-) (10)	NA	NA	NA	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os01g08610.1	"hAT dimerisation domain-containing protein, putative"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.55974.1.S1_at	B	B1S	POPTR_0008s19880	POPTR_0008s19880 (2:589)	NA	NA	NA	NA	AT1G27090.1	glycine-rich protein 	LOC_Os03g48260.1	expressed protein	Medtr5g038980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56.1.S1_at	B	B1S	POPTR_0003s06360	POPTR_0003s06360 (3:434)	NA	NA	NA	NA	AT3G13960.1	growth-regulating factor 5 	LOC_Os02g53690.1	"growth regulating factor protein, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.56078.1.A1_at	B	B1S	POPTR_0005s26700	POPTR_0005s26700 (3:213)	NA	NA	Q9SGS4	"Thioredoxin-like protein CDSP32, chloroplastic"	AT1G76080.1	chloroplastic drought-induced stress protein of 32 kD 	LOC_Os07g29410.1	"thioredoxin, putative, expressed"	Medtr1g032070.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.56135.1.A1_at	B	B1S	POPTR_0007s04191	POPTR_0007s04191 (5:204)	NA	NA	NA	NA	AT4G19950.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 338 Blast hits to 330 proteins in 72 species: Archae - 2; Bacteria - 94; Metazoa - 7; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os08g01590.2	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56138.1.A1_at	B	B1S	POPTR_0010s12840	POPTR_0010s12840 (7:308)	scaffold_10:12807741-12808231(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56190.1.A1_at	B	B1S	POPTR_0017s11830	POPTR_0017s11830 (6:140)	scaffold_17:11729326-11729656(+) (11)	NA	Q9FIW5	Putative NAC domain-containing protein 94	AT5G39820.1	NAC domain containing protein 94 	LOC_Os08g33910.1	"no apical meristem protein, putative, expressed"	Medtr5g043830.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.56200.1.A1_at	B	B1S	POPTR_0001s06620	POPTR_0001s06620 (8:310)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56205.1.A1_at	B	B1S	POPTR_0007s10610	POPTR_0007s10610 (4:337)	NA	NA	Q8T9S7	"Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN"	AT3G19420.1	PTEN 2 	LOC_Os12g21890.1	"PTEN, putative, expressed"	Medtr5g016480.1	"Dual specificity protein phosphatase; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5621.1.A1_at	B	B1S	POPTR_0013s02550	POPTR_0013s02550 (8:443)	scaffold_13:1508985-1509429(-) (9)	NA	NA	NA	AT1G54850.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr1g099290.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56222.1.A1_at	B	B1S	POPTR_0009s02370	POPTR_0009s02370 (0:741)	NA	NA	Q84WM9	Elongation factor 1-beta 1	AT5G12110.1	"Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6 "	LOC_Os07g46750.1	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.56250.1.S1_at	B	B1S	POPTR_0018s02330	POPTR_0018s02330 (6:468)	NA	NA	P62598	Two-component response regulator ARR12	AT2G25180.1	response regulator 12 	LOC_Os02g08500.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.56256.1.A1_at	B	B1S	POPTR_0002s02270	POPTR_0002s02270 (8:330)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56315.1.A1_at	B	B1S	POPTR_0004s04140	POPTR_0004s04140 (8:499)	NA	NA	NA	NA	AT3G47160.1	RING/U-box superfamily protein 	LOC_Os07g46700.3	"zinc finger, RING-type, putative, expressed"	AC233659_30.2	"Zinc finger, RING-type AC233659.1 131567-127095 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56319.2.A1_at	B	B1S	POPTR_0010s02180	POPTR_0010s02180 (6:370)	scaffold_893:1502-1613(+) (9)	NA	Q8RWY3	Putative chromatin-remodeling complex ATPase chain	AT5G18620.2	chromatin remodeling factor17 	LOC_Os01g27040.1	"chromatin-remodeling complex ATPase chain, putative, expressed"	Medtr2g025110.1	"SNF2-related; Helicase, C-terminal; Homeodomain-related; ; ; ; "	GO:0043044|ATP-dependent chromatin remodeling	GO:0031491|nucleosome binding||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0016585|chromatin remodeling complex
PtpAffx.56332.1.A1_at	B	B2S	POPTR_0019s09990	POPTR_0019s09990 (7:643)//POPTR_0019s10000 (4:601)	scaffold_19:11623152-11625690(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56409.1.S1_at	B	B1S	POPTR_0016s09580	POPTR_0016s09580 (7:137)	NA	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.56409.2.S1_s_at	B	B1S	POPTR_0016s09580	POPTR_0016s09580 (7:192)	scaffold_16:7494101-7494511(-) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.56425.1.A1_at	B	B1S	POPTR_0005s02150	POPTR_0005s02150 (2:67)	NA	NA	Q4FK66	Pre-mRNA-splicing factor 38A	AT2G40650.1	PRP38 family protein 	LOC_Os09g01630.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr1g100230.1	PRP38 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56461.2.A1_at	B	B1S	POPTR_0001s45360	POPTR_0001s45360 (4:193)	NA	NA	Q43784	"Granule-bound starch synthase 1, chloroplastic/amyloplastic"	AT1G32900.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g22930.3	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.56484.1.A1_at	B	B1S	POPTR_0010s19510	POPTR_0010s19510 (7:1784)	NA	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.56511.1.A1_at	B	B1S	POPTR_0002s04500	POPTR_0002s04500 (8:608)	NA	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117520.1	"zinc finger family protein {Arabid, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56583.2.A1_a_at	B	B1S	POPTR_0003s16890	POPTR_0003s16890 (4:250)	scaffold_3:16404143-16404624(-) (11)	NA	NA	NA	AT3G48660.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56583.2.A1_at	B	B1S	POPTR_0003s16890	POPTR_0003s16890 (8:306)	scaffold_3:16404212-16404680(-) (11)	NA	NA	NA	AT3G48660.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56591.1.A1_at	B	B1S	POPTR_0004s20730	POPTR_0004s20730 (6:123)	NA	NA	Q9ZVD0	Serrate RNA effector molecule	AT2G27100.1	C2H2 zinc-finger protein SERRATE (SE) 	LOC_Os06g48530.1	"ZOS6-09 - C2H2 zinc finger protein, expressed"	Medtr8g047770.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56606.1.A1_at	B	B1S	POPTR_0012s01860	POPTR_0012s01860 (7:501)	NA	NA	Q03460	"Glutamate synthase [NADH], amyloplastic"	AT5G53460.3	NADH-dependent glutamate synthase 1 	LOC_Os01g48960.1	"glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process||GO:0044281|small molecule metabolic process	GO:0015930|glutamate synthase activity||GO:0050660|FAD binding	NA
PtpAffx.5662.1.S1_at	B	B1S	POPTR_0010s10990	POPTR_0010s10990 (0:284)	scaffold_10:11388324-11388396(-) (9)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT1G14600.1	Homeodomain-like superfamily protein 	LOC_Os03g03760.1	"MYB family transcription factor, putative, expressed"	Medtr1g039660.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56642.1.A1_at	B	B1S	POPTR_0003s01050	POPTR_0003s01050 (2:36)	scaffold_3:924707-924832(-) (11)	NA	O35900	U6 snRNA-associated Sm-like protein LSm2	AT1G03330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g05850.1	"LSM domain containing protein, expressed"	Medtr7g127450.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5665.2.S1_at	B	B1S	POPTR_0003s17000	POPTR_0003s17000 (8:518)	NA	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.56651.2.S1_at	B	B1S	POPTR_0002s06120	POPTR_0002s06120 (6:564)	NA	NA	Q38911	Probable xyloglucan endotransglucosylase/hydrolase protein 15	AT4G14130.1	xyloglucan endotransglucosylase/hydrolase 15 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.5671.5.S1_at	B	B2S	POPTR_0001s35000	POPTR_0001s35000 (8:1034)//POPTR_0001s34990 (2:468)	scaffold_1:33281213-33284698(-) (10)	NA	NA	NA	AT3G01560.1	Protein of unknown function (DUF1421) 	LOC_Os01g07520.1	"proline-rich family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56749.1.A1_at	B	B1S	POPTR_0019s13700	POPTR_0019s13700 (5:372)	scaffold_19:14563165-14563698(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5675.3.A1_a_at	B	B1S	POPTR_0008s19420	POPTR_0008s19420 (2:1426)	scaffold_8:13362308-13364065(+) (11)	NA	O49453	Uncharacterized protein At4g28440	AT1G23750.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr5g035620.1	"nucleic acid binding, OB-fold, tRNA/helicase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56765.1.A1_at	B	B1S	POPTR_0014s03580	POPTR_0014s03580 (7:282)	NA	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os12g30040.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr2g014200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.56848.1.A1_at	B	B1S	POPTR_0018s03440	POPTR_0018s03440 (8:573)	NA	NA	NA	NA	AT4G31570.1	CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). 	LOC_Os02g05490.1	expressed protein	Medtr1g010620.1	Prefoldin 	GO:0016032|viral reproduction	NA	NA
PtpAffx.5686.2.S1_at	B	B1S	POPTR_0001s39260	POPTR_0001s39260 (8:1660)	NA	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT1G78600.1	light-regulated zinc finger protein 1 	LOC_Os01g10580.1	"B-box zinc finger family protein, putative, expressed"	Medtr3g162910.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.56861.1.A1_at	B	B1S	POPTR_0014s12280	POPTR_0014s12280 (8:1303)	scaffold_14:9057195-9059071(-) (9)	NA	Q5Z8Q9	Poly [ADP-ribose] polymerase 2-A	AT4G02390.1	poly(ADP-ribose) polymerase 	LOC_Os01g24940.1	"poly synthetase 2-A, putative, expressed"	Medtr1g108270.1	"Poly(ADP-ribose) polymerase, regulatory region; PARP, catalytic "	GO:0044260|cellular macromolecule metabolic process||GO:0006471|protein amino acid ADP-ribosylation	GO:0003676|nucleic acid binding||GO:0003950|NAD+ ADP-ribosyltransferase activity	NA
PtpAffx.56874.1.A1_at	B	B1S	POPTR_0013s05720	POPTR_0013s05720 (4:129)	scaffold_13:4112788-4112966(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5688.2.S1_at	B	B1S	POPTR_0008s22260	POPTR_0008s22260 (8:548)	NA	NA	Q6S004	Kinesin-related protein 6	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g06280.2	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr8g138640.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.56938.1.A1_at	B	B1S	POPTR_0008s10860	POPTR_0008s10860 (7:365)	NA	NA	NA	NA	AT1G69040.1	ACT domain repeat 4 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr5g049410.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.56951.1.S1_at	B	B1S	POPTR_0009s15320	POPTR_0009s15320 (3:222)	NA	NA	NA	NA	AT5G22820.1	ARM repeat superfamily protein 	LOC_Os03g47980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57011.1.A1_at	B	B1S	POPTR_0002s00940	POPTR_0002s00940 (1:182)	NA	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g009400.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.57019.1.A1_at	B	B1S	POPTR_0015s06720	POPTR_0015s06720 (8:197)	NA	NA	Q8N3C0	Activating signal cointegrator 1 complex subunit 3	AT5G61140.1	U5 small nuclear ribonucleoprotein helicase 	LOC_Os02g01740.1	"U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed"	Medtr3g037000.1	Sec63; ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.57046.2.S1_at	B	B1S	POPTR_0006s20490	POPTR_0006s20490 (6:819)	scaffold_6:19493535-19494479(-) (11)	NA	Q66HG0	E3 ubiquitin-protein ligase RNF13	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5719.1.S1_at	B	B1S	POPTR_0006s04470	POPTR_0006s04470 (1:108)	NA	NA	Q96CS2	HAUS augmin-like complex subunit 1	AT2G41350.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21980.1); Has 188 Blast hits to 188 proteins in 66 species: Archae - 0; Bacteria - 12; Metazoa - 90; Fungi - 15; Plants - 54; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). 	LOC_Os08g14220.1	expressed protein	Medtr3g111390.1	"Helix-turn-helix, AraC type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57191.2.A1_at	B	B1S	POPTR_0007s11040	POPTR_0007s11040 (1:2729)	scaffold_7:11312858-11316955(+) (9)	NA	Q8LDU4	"Red chlorophyll catabolite reductase, chloroplastic"	AT4G37000.1	accelerated cell death 2 (ACD2) 	LOC_Os10g25030.1	"red chlorophyll catabolite reductase, putative, expressed"	Medtr5g103790.1	Red chlorophyll catabolite reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.572.1.S1_at	B	B1S	POPTR_0008s11600	POPTR_0008s11600 (4:391)	NA	NA	Q9C6M5	AP2/ERF and B3 domain-containing transcription repressor TEM1	AT1G25560.1	AP2/B3 transcription factor family protein 	LOC_Os01g49830.1	"B3 DNA binding domain containing protein, expressed"	Medtr5g069060.1	Pathogenesis-related transcriptional factor and ERF; Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.57263.1.A1_at	B	B1S	POPTR_0013s04670	POPTR_0013s04670 (0:339)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57273.1.A1_at	B	B1S	POPTR_0001s05660	POPTR_0001s05660 (4:173)	scaffold_1:4374251-4374648(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57301.1.A1_at	B	B1S	POPTR_0002s05180	POPTR_0002s05180 (2:130)	NA	NA	NA	NA	AT4G02715.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g084110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57322.1.A1_at	B	B1S	POPTR_0018s12960	POPTR_0018s12960 (5:361)	NA	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G26600.1	Glycosyl hydrolase superfamily protein 	LOC_Os06g40490.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr8g120870.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.57325.1.S1_at	B	B1S	POPTR_0018s11340	POPTR_0018s11340 (5:565)	scaffold_18:12122205-12123272(+) (10)	NA	NA	NA	AT5G57880.1	multipolar spindle 1 	LOC_Os08g44180.1	expressed protein	Medtr8g145070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57359.1.A1_at	B	B1S	POPTR_0014s18420	POPTR_0014s18420 (5:148)	NA	NA	Q2TSC7	Glutathione gamma-glutamylcysteinyltransferase 1	AT5G44070.1	phytochelatin synthase 1 (PCS1) 	LOC_Os06g01260.1	"glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed"	NA	NA	GO:0010038|response to metal ion||GO:0046938|phytochelatin biosynthetic process	GO:0046872|metal ion binding||GO:0016756|glutathione gamma-glutamylcysteinyltransferase activity	NA
PtpAffx.57369.1.A1_at	B	B1S	POPTR_0001s22160	POPTR_0001s22160 (0:140)	NA	NA	Q3T0E5	Adipocyte plasma membrane-associated protein	AT1G08470.1	strictosidine synthase-like 3 	LOC_Os03g53950.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.57374.1.A1_at	B	B1A	POPTR_0010s13460	POPTR_0010s13460 (6:590)	NA	NA	NA	NA	AT1G13380.1	Protein of unknown function (DUF1218) 	LOC_Os09g10910.3	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5749.1.A1_at	B	B1S	POPTR_0002s22430	POPTR_0002s22430 (1:461)	NA	NA	O22466	WD-40 repeat-containing protein MSI1	AT5G58230.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57594.1.S1_s_at	B	B1S	POPTR_0005s25090	POPTR_0005s25090 (7:377)	NA	NA	Q9SU08	Auxilin-related protein 1	AT1G75310.1	auxin-like 1 protein 	LOC_Os05g50370.1	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.576.1.S1_at	B	B1S	POPTR_0008s11190	POPTR_0008s11190 (6:1052)	NA	NA	Q04619	Heat shock cognate protein HSP 90-beta	AT2G04030.1	Chaperone protein htpG family protein 	LOC_Os09g29840.1	"heat shock protein, putative, expressed"	Medtr5g105030.2	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.57620.1.S1_at	B	B2S	POPTR_0005s01660	POPTR_0005s01660 (5:188)//POPTR_0056s00260 (5:188)	NA	NA	P24397	Hyoscyamine 6-dioxygenase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os07g07410.2	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.5772.6.S1_at	B	B1S	POPTR_0014s09080	POPTR_0014s09080 (2:225)	NA	NA	NA	NA	AT5G41761.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g33200.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57734.1.S1_at	B	B1S	POPTR_0004s21310	POPTR_0004s21310 (8:368)	NA	NA	NA	NA	AT3G52740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g33610.1	expressed protein	Medtr7g127310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57875.1.A1_at	B	B1A	POPTR_0001s04270	POPTR_0001s04270 (5:164)	scaffold_1:3376860-3377386(+) (10)	NA	NA	NA	AT4G08810.1	calcium ion binding 	LOC_Os07g43990.1	expressed protein	Medtr4g134130.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57879.1.S1_at	B	B1S	POPTR_0001s23840	POPTR_0001s23840 (4:540)	NA	NA	NA	NA	AT2G31940.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 227 Blast hits to 227 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g27330.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr2g080100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5793.1.S1_at	B	B1S	POPTR_0001s07450	POPTR_0001s07450 (2:223)	scaffold_1:5603700-5605794(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5793.2.S1_s_at	B	B1S	POPTR_0003s18640	POPTR_0003s18640 (6:411)	scaffold_1:5603575-5605495(+) (11)//scaffold_3:17636664-17638692(-) (11)	NA	NA	NA	NA	NA	NA	NA	AC233655_30.1	hypothetical protein AC233655.2 191117-192500 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5793.3.A1_at	B	B1A	POPTR_0001s07450	POPTR_0001s07450 (7:345)	scaffold_1:5603578-5604071(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58.1.S1_at	B	B1S	POPTR_0013s07460	POPTR_0013s07460 (8:1063)	scaffold_13:6253855-6254921(-) (9)	NA	Q5DJU3	Origin recognition complex subunit 3	AT5G16690.1	origin recognition complex subunit 3 	LOC_Os10g26280.1	"ORC3 - Putative origin recognition complex subunit 3, expressed"	Medtr5g090030.1	"Origin recognition complex subunit 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.581.1.S1_a_at	B	B1S	POPTR_0005s21820	POPTR_0005s21820 (3:185)	scaffold_5:20894830-20895346(-) (11)	NA	NA	NA	AT4G09830.1	Uncharacterised conserved protein UCP009193 	LOC_Os01g40690.1	"holocarboxylase synthetase, putative, expressed"	Medtr1g124740.1	"holocarboxylase synthetase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58146.1.S1_at	B	B1S	POPTR_0019s05240	POPTR_0019s05240 (7:1278)	NA	NA	Q9SRV7	Putative syntaxin-131	AT3G03800.1	syntaxin of plants 131 	LOC_Os07g07000.1	"syntaxin, putative, expressed"	Medtr2g103770.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
PtpAffx.58160.1.A1_at	B	B1S	POPTR_0006s03680	POPTR_0006s03680 (4:172)	scaffold_6:2447643-2448134(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58188.1.S1_at	B	B1S	POPTR_0001s25640	POPTR_0001s25640 (8:327)	scaffold_1:24707026-24707416(+) (11)	NA	NA	NA	AT1G07310.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5828.1.A1_at	B	B1A	POPTR_0005s09910	POPTR_0005s09910 (7:270)	scaffold_5:6988536-6988910(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58357.1.S1_at	B	B1S	POPTR_0011s05100	POPTR_0011s05100 (0:16)	NA	NA	NA	NA	AT3G15390.1	silencing defective 5 	LOC_Os02g42670.1	"DUF1771 domain containing protein, putative, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58373.1.S1_at	B	B1S	POPTR_0002s02390	POPTR_0002s02390 (5:320)	NA	NA	P48583	ER lumen protein retaining receptor	AT1G75760.1	ER lumen protein retaining receptor family protein 	LOC_Os08g43470.1	"ER lumen protein retaining receptor, putative, expressed"	Medtr3g156420.1	ER lumen protein retaining receptor; Orn/DAP/Arg decarboxylase 2 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
PtpAffx.58383.1.A1_s_at	B	B1S	POPTR_0018s06990	POPTR_0018s06990 (2:375)	scaffold_18:7114362-7115043(+) (10)	NA	NA	NA	AT5G20120.1	unknown protein; Has 54 Blast hits to 54 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr8g119850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5844.1.S1_at	B	B1S	POPTR_0011s00570	POPTR_0011s00570 (8:2243)	scaffold_11:271059-273569(-) (11)	NA	NA	NA	AT1G68680.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; Has 20 Blast hits to 20 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g08414.1	expressed protein	Medtr8g119360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58455.1.S1_at	B	B2S	POPTR_0004s15940	POPTR_0004s15880 (6:857)//POPTR_0004s15940 (7:856)	scaffold_4:16429132-16430045(-) (9)	NA	P30235	Pseudouridine kinase	AT1G49350.1	pfkB-like carbohydrate kinase family protein 	LOC_Os05g09370.4	"kinase, pfkB family, putative, expressed"	Medtr4g114470.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58457.1.S1_at	B	B1S	POPTR_0008s05750	POPTR_0008s05750 (4:455)	NA	NA	O80933	Scarecrow-like protein 9	AT2G37650.1	GRAS family transcription factor 	LOC_Os03g48450.4	"SCARECROW, putative, expressed"	Medtr4g083880.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58487.1.S1_at	B	B1S	POPTR_0006s11510	POPTR_0006s11510 (7:273)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5850.3.A1_s_at	B	B1S	POPTR_0017s08880	POPTR_0017s08880 (5:253)	scaffold_17:7513559-7513979(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58504.1.S1_at	B	B1S	POPTR_0008s23190	POPTR_0008s23190 (5:767)	NA	NA	A7PZL3	Probable polygalacturonase	AT3G16850.1	Pectin lyase-like superfamily protein 	LOC_Os11g43750.1	"polygalacturonase, putative, expressed"	Medtr8g138460.1	"Glycoside hydrolase, family 28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58509.1.S1_at	B	B1S	POPTR_0003s09480	POPTR_0003s09480 (7:615)	NA	NA	Q9UGL1	Lysine-specific demethylase 5B	AT5G46910.1	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os10g42690.1	"jmjC domain containing protein, expressed"	Medtr5g029270.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN "	NA	NA	GO:0005634|nucleus
PtpAffx.586.1.A1_at	B	B1S	POPTR_0018s06710	POPTR_0018s06710 (6:455)	scaffold_18:6756689-6757752(+) (10)	NA	P07314	Gamma-glutamyltranspeptidase 1	AT4G29210.1	gamma-glutamyl transpeptidase 4 	LOC_Os01g05810.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr6g093830.1	Gamma-glutamyltranspeptidase 	NA	GO:0003840|gamma-glutamyltransferase activity	NA
PtpAffx.5862.1.A1_at	B	B1S	POPTR_0003s19730	POPTR_0003s19730 (7:398)	NA	NA	Q9M1I1	F-box protein At3g54460	AT3G54460.1	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein 	LOC_Os01g72310.1	"OsFBO7 - F-box and other domain containing protein, expressed"	Medtr3g020010.1	"SNF2-related; Cyclin-like F-box; Zinc finger, CW-type "	NA	GO:0008270|zinc ion binding||GO:0003676|nucleic acid binding||GO:0005524|ATP binding||GO:0004386|helicase activity	NA
PtpAffx.58639.1.A1_at	B	B1S	POPTR_0004s17620	POPTR_0004s17620 (8:383)	NA	NA	Q3SWX0	Magnesium transporter NIPA2	AT2G21120.1	Protein of unknown function (DUF803) 	LOC_Os05g35570.1	"DUF803 domain containing, putative, expressed"	Medtr4g144260.1	Protein of unknown function DUF803 	NA	NA	GO:0016020|membrane
PtpAffx.58649.2.A1_at	B	B1S	POPTR_0004s16530	POPTR_0004s16530 (8:159)	NA	NA	Q7FGZ2	DEAD-box ATP-dependent RNA helicase 1	AT4G15850.1	RNA helicase 1 	LOC_Os02g55260.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g085470.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.58727.1.S1_at	B	B1S	POPTR_0007s04700	POPTR_0007s04700 (5:3201)	NA	NA	Q5PQN1	Probable E3 ubiquitin-protein ligase HERC4	AT5G63860.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g35570.1	"Regulator of chromosome condensation domain containing protein, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58733.1.A1_at	B	B1S	POPTR_0002s01480	POPTR_0002s01480 (0:861)	NA	NA	Q9FH04	Alcohol dehydrogenase-like 7	AT5G42250.1	Zinc-binding alcohol dehydrogenase family protein 	LOC_Os07g42924.1	"dehydrogenase, putative, expressed"	Medtr3g111430.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.58744.1.A1_at	B	B1S	POPTR_0001s23680	POPTR_0001s23680 (2:79)	NA	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr2g071640.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.58763.1.S1_at	B	B1S	POPTR_0004s04010	POPTR_0004s04010 (6:2046)	NA	NA	Q5YDB6	RNA polymerase II C-terminal domain phosphatase-like 1	AT4G21670.1	C-terminal domain phosphatase-like 1 	LOC_Os02g42600.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g024780.1	NLI interacting factor 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.58773.1.A1_at	B	B1S	POPTR_0007s05080	POPTR_0007s05080 (5:395)	NA	NA	A2YNT8	Serine/threonine-protein kinase SAPK2	AT4G33950.2	Protein kinase superfamily protein 	LOC_Os07g42940.1	"CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g073720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.58789.1.A1_at	B	B1S	POPTR_0004s11420	POPTR_0004s11420 (6:1142)	scaffold_4:10038560-10039982(-) (10)	NA	Q42429	Agamous-like MADS-box protein AGL8 homolog	AT1G26310.1	K-box region and MADS-box transcription factor family protein  	LOC_Os07g41370.1	"OsMADS18 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g049070.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.5879.1.S1_at	B	B2S	POPTR_0001s36850	POPTR_0001s36850 (4:1315)//POPTR_0001s36860 (4:765)	scaffold_1:35609868-35618262(-) (10)	NA	NA	NA	AT5G52060.1	BCL-2-associated athanogene 1 	LOC_Os04g52890.1	"ATBAG1, putative, expressed"	Medtr1g129370.1	"Ubiquitin; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.58792.1.A1_at	B	B1S	POPTR_0008s13070	POPTR_0008s13070 (0:93)	NA	NA	Q9FVJ3	ADP-ribosylation factor GTPase-activating protein AGD12	AT1G70790.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g22130.1	expressed protein	Medtr1g034940.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58802.1.A1_at	B	B1S	POPTR_0022s00410	POPTR_0022s00410 (4:228)	NA	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.58812.1.A1_at	B	B1S	POPTR_0007s08250	POPTR_0007s08250 (6:526)	NA	NA	Q9FKE6	Cyclin-T1-5	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58813.1.A1_at	B	B1S	POPTR_0007s10480	POPTR_0007s10480 (8:533)	NA	NA	Q9M3H5	"Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic"	AT4G37270.1	heavy metal atpase 1 	LOC_Os06g47550.1	"cadmium/zinc-transporting ATPase, putative, expressed"	Medtr2g041260.1	Cof protein; Heavy metal translocating P-type ATPase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.5883.1.A1_at	B	B1S	POPTR_0010s10220	POPTR_0010s10220 (5:280)	NA	NA	Q76P23	Mitochondrial substrate carrier family protein Q	AT5G27520.1	peroxisomal adenine nucleotide carrier 2 	LOC_Os05g32630.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g040670.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58840.1.A1_at	B	B1S	POPTR_0001s21850	POPTR_0001s21850 (5:480)	NA	NA	P0CB26	Uncharacterized protein At1g10890	AT1G10890.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses - 101; Other Eukaryotes - 3081 (source: NCBI BLink). "	LOC_Os10g15390.1	"ribosomal protein S7, putative, expressed"	Medtr2g007210.1	"Arginine and glutamate-rich protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.58869.1.S1_at	B	B2S	POPTR_0015s06760	POPTR_0015s06770 (8:580)//POPTR_0015s06760 (8:453)	NA	NA	P42730	Heat shock protein 101	AT1G74310.1	heat shock protein 101 	LOC_Os05g44340.1	"heat shock protein 101, putative, expressed"	Medtr6g014150.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.5887.1.S1_a_at	B	B1S	POPTR_0014s16680	POPTR_0014s16680 (6:946)	scaffold_14:12775720-12776941(+) (11)	NA	NA	NA	AT5G55850.3	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5893.1.A1_at	B	B1S	POPTR_0001s37610	POPTR_0001s37610 (0:207)	NA	NA	P35659	Protein DEK	AT4G26630.2	DEK domain-containing chromatin associated protein 	LOC_Os03g40010.1	"DEK C terminal domain containing protein, expressed"	Medtr5g103320.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5895.1.S1_at	B	B1S	POPTR_0003s13380	POPTR_0003s13380 (8:1014)	NA	NA	Q42479	Calcium-dependent protein kinase 3	AT4G23650.1	calcium-dependent protein kinase 6 	LOC_Os01g43410.1	"CAMK_CAMK_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g009940.1	Protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.59036.1.S1_at	B	B1S	POPTR_0004s13560	POPTR_0004s13560 (5:317)	scaffold_4:13882437-13883005(-) (11)	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT5G40340.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g38810.1	"PWWP domain containing protein, expressed"	Medtr6g005700.1	PWWP; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59037.2.S1_at	B	B1S	POPTR_0008s20100	POPTR_0008s20100 (5:480)	NA	NA	O78328	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT4G15560.1	Deoxyxylulose-5-phosphate synthase 	LOC_Os05g33840.1	"transketolase, putative, expressed"	Medtr8g139810.1	"Transketolase, C-terminal-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.5912.2.A1_at	B	B1S	POPTR_0019s14590	POPTR_0019s14590 (0:242)	NA	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.5925.1.S1_at	B	B1S	POPTR_0018s09990	POPTR_0018s09990 (5:490)	scaffold_18:11044400-11048182(-) (11)	NA	Q9SUM2	Probable small nuclear ribonucleoprotein F	AT4G30220.1	small nuclear ribonucleoprotein F 	LOC_Os11g43620.1	"LSM domain containing protein, expressed"	Medtr8g129040.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5944.1.A1_at	B	B1S	POPTR_0008s19950	POPTR_0008s19950 (6:194)	NA	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT3G06035.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5949.1.A1_at	B	B1S	POPTR_0008s20190	POPTR_0008s20190 (8:513)	NA	NA	NA	NA	AT5G18850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.595.4.S1_at	B	B1S	POPTR_0006s28990	POPTR_0006s28990 (5:68)	NA	NA	Q03194	Plasma membrane ATPase 4	AT2G24520.1	H(+)-ATPase 5 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.59514.1.S1_at	B	B2S	POPTR_0008s16190	POPTR_0008s16230 (7:438)//POPTR_0008s16190 (8:428)	NA	NA	NA	NA	AT1G04280.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g43300.1	expressed protein	Medtr1g089770.1	"H1flk, putative "	GO:0001906|cell killing	GO:0005524|ATP binding	NA
PtpAffx.59536.1.S1_at	B	B1S	POPTR_0001s29620	POPTR_0001s29620 (4:313)	NA	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.59536.1.S1_s_at	B	B1S	POPTR_0001s29620	POPTR_0001s29620 (8:480)	NA	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.59546.1.S1_at	B	B1S	POPTR_0011s14470	POPTR_0011s14470 (8:224)	NA	NA	P40340	Tat-binding homolog 7	AT3G15120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g47800.1	"AAA-type ATPase family protein, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.59550.1.S1_at	B	B1S	POPTR_0015s11160	POPTR_0015s11160 (8:367)	NA	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os02g30650.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150810.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.59560.1.S1_at	B	B1S	POPTR_0002s25790	POPTR_0002s25790 (8:327)	scaffold_2:22855380-22855739(+) (10)	NA	Q7XJ98	Xyloglucan galactosyltransferase KATAMARI1	AT2G20370.1	Exostosin family protein 	LOC_Os03g05110.1	"xyloglucan galactosyltransferase KATAMARI1, putative, expressed"	Medtr7g117070.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.5960.2.S1_at	B	B1S	POPTR_0006s07440	POPTR_0006s07440 (5:411)	NA	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23550.1	"basic helix-loop-helix family protein, putative, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.59662.1.S1_at	B	B1S	POPTR_0006s13860	POPTR_0006s13860 (8:332)	NA	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G43220.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.1	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59663.1.A1_at	B	B1S	POPTR_0014s01890	POPTR_0014s01890 (0:1094)	NA	NA	Q9STX1	Acyl-CoA-binding domain-containing protein 3	AT4G24230.5	acyl-CoA-binding domain 3 	LOC_Os03g14000.1	"acyl CoA binding protein, putative, expressed"	NA	NA	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.5968.3.S1_a_at	B	B1S	POPTR_0017s09580	POPTR_0017s09580 (8:157)	NA	NA	NA	NA	AT5G41070.1	dsRNA-binding protein 5 	LOC_Os05g05790.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.5980.1.S1_a_at	B	B1S	POPTR_0007s11000	POPTR_0007s11000 (2:210)	scaffold_7:11247913-11248319(-) (11)	NA	Q8N2M8	"Splicing factor, arginine/serine-rich 16"	AT4G36980.4	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). "	LOC_Os03g27840.1	"splicing factor, arginine/serine-rich 16, putative, expressed"	Medtr5g017370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59964.1.S1_at	B	B1S	POPTR_0022s00850	POPTR_0022s00850 (7:128)	NA	NA	Q68CQ4	Digestive organ expansion factor homolog	AT1G17690.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). "	LOC_Os05g22920.1	"digestive organ expansion factor, putative, expressed"	Medtr2g013650.1	Protein of unknown function DUF1253 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59978.1.S1_at	B	B1S	POPTR_0012s09430	POPTR_0012s09430 (6:115)	NA	NA	Q93ZR1	Elongator complex protein 3	AT5G50320.1	radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein 	LOC_Os04g40840.1	"elongator complex protein 3, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.6000.3.A1_at	B	B1A	POPTR_0001s03750	POPTR_0001s03750 (4:183)	scaffold_1:3017835-3018105(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60047.1.S1_at	B	B1S	POPTR_0007s09970	POPTR_0007s09970 (3:293)	scaffold_7:9525292-9525827(-) (10)	NA	NA	NA	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60047.2.S1_at	B	B1A	POPTR_0007s09980	POPTR_0007s09980 (7:408)	scaffold_7:9526800-9527342(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60047.3.A1_at	B	B1A	POPTR_0007s09970	POPTR_0007s09970 (6:175)	scaffold_7:9525166-9525709(+) (9)	NA	NA	NA	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60049.3.A1_at	B	B1A	POPTR_0001s14470	POPTR_0001s14470 (6:348)	scaffold_1:11351166-11351691(+) (10)	NA	Q9ZVQ6	F-box protein PP2-B10	AT2G02360.1	phloem protein 2-B10 	LOC_Os02g56760.1	OsFBX66 - F-box domain containing protein	Medtr1g092780.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60057.1.S1_at	B	B1S	POPTR_0018s14600	POPTR_0018s14600 (5:1234)	scaffold_18:14736605-14737941(+) (11)	NA	NA	NA	AT2G07340.2	PREFOLDIN 1 	LOC_Os02g26440.1	"prefoldin subunit, putative, expressed"	Medtr8g042790.1	Prefoldin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60071.1.S1_at	B	B1S	POPTR_0018s06350	POPTR_0018s06350 (8:500)	NA	NA	Q5ZMS6	Tudor domain-containing protein 3	AT5G19950.2	Domain of unknown function (DUF1767) 	LOC_Os01g08280.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60083.1.S1_at	B	B2S	POPTR_0011s16850	POPTR_0011s16850 (0:338)//POPTR_0221s00220 (0:338)	NA	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os06g06380.1	"NBS-LRR type disease resistance protein, putative, expressed"	Medtr3g015730.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.60084.1.S1_s_at	B	B1A	POPTR_0006s03050	POPTR_0006s03050 (5:387)	scaffold_6:1934228-1934709(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60109.1.S1_at	B	B1S	POPTR_0016s14910	POPTR_0016s14910 (2:926)	NA	NA	NA	NA	AT3G23590.1	REF4-related 1 	LOC_Os07g48350.1	"structural constituent of ribosome, putative, expressed"	Medtr7g080810.1	"REF4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60119.1.S1_at	B	B1S	POPTR_0006s03970	POPTR_0006s03970 (6:420)	NA	NA	P53780	"Cystathionine beta-lyase, chloroplastic"	AT3G57050.1	cystathionine beta-lyase 	LOC_Os06g07960.1	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.60213.1.S1_at	B	B1S	POPTR_0004s21320	POPTR_0004s21320 (7:512)	NA	NA	NA	NA	AT3G52740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g33610.1	expressed protein	Medtr2g107800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6024.3.A1_a_at	B	B1S	POPTR_0001s40450	POPTR_0001s40450 (6:80)	scaffold_1:39894612-39894964(-) (11)	NA	Q8GXH3	"Protein OSB2, chloroplastic"	AT4G20010.1	plastid transcriptionally active 9 	LOC_Os01g72049.1	"retrotransposon, putative, centromere-specific, expressed"	Medtr1g083420.1	Single-strand binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60312.1.S1_at	B	B1S	POPTR_0006s11550	POPTR_0006s11550 (8:1597)	NA	NA	NA	NA	AT1G19490.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os12g06010.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr7g126980.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.60319.1.S1_at	B	B1S	POPTR_0011s02870	POPTR_0011s02870 (7:399)	NA	NA	O65399	"Glucan endo-1,3-beta-glucosidase 1"	AT1G29380.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os05g50490.2	"X8 domain containing protein, expressed"	Medtr2g056650.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60325.1.S1_at	B	B2S	POPTR_0001s00300	POPTR_0001s00300 (8:405)//POPTR_0003s11170 (1:311)	NA	NA	Q8H038	Xyloglucan galactosyltransferase KATAMARI1 homolog	AT4G22580.1	Exostosin family protein 	LOC_Os10g40559.1	"exostosin family domain containing protein, expressed"	Medtr8g138830.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.6033.2.S1_at	B	B1S	POPTR_0009s17200	POPTR_0009s17200 (8:854)	NA	NA	O22446	Histone deacetylase 19	AT4G38130.1	histone deacetylase 1 	LOC_Os06g38470.1	"histone deacetylase 19, putative, expressed"	Medtr3g164120.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60356.1.S1_at	B	B1S	POPTR_0007s08410	POPTR_0007s08410 (7:1888)	NA	NA	P25586	Ribosomal RNA assembly protein KRR1	AT5G08420.1	RNA-binding KH domain-containing protein 	LOC_Os10g31520.1	"ribosomal RNA assembly protein mis3, putative, expressed"	Medtr5g094630.2	"KH, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60626.1.S1_at	B	B1S	POPTR_0015s01670	POPTR_0015s01670 (8:1816)	NA	NA	Q8GZ42	Histone-lysine N-methyltransferase ATX5	AT5G53430.1	SET domain group 29 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60689.1.S1_at	B	B1S	POPTR_0001s00530	POPTR_0001s00530 (7:499)	NA	NA	NA	NA	AT4G16530.1	Family of unknown function (DUF577) 	LOC_Os10g36340.2	expressed protein	Medtr8g105870.1	"LOC445872 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60708.1.S1_at	B	B1S	POPTR_0016s11600	POPTR_0016s11600 (7:1513)	NA	NA	NA	NA	AT3G54040.1	PAR1 protein 	NA	NA	Medtr4g015430.1	PAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6071.1.A1_at	B	B1S	POPTR_0005s10420	POPTR_0005s10420 (7:374)	scaffold_5:7476724-7477210(-) (10)	NA	Q5E9J1	Heterogeneous nuclear ribonucleoprotein F	AT5G66010.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g03890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g088030.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; RNA-binding region RNP-1 (RNA recognition motif) "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.60882.1.S1_at	B	B1S	POPTR_0003s11440	POPTR_0003s11440 (6:1166)	NA	NA	Q5FVD6	Maspardin	AT4G12230.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g08840.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g106940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6089.1.S1_at	B	B1S	POPTR_0014s11710	POPTR_0014s11710 (3:615)	NA	NA	Q8LGG8	Universal stress protein A-like protein	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g106920.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.609.1.A1_a_at	B	B1S	POPTR_0003s03980	POPTR_0003s03980 (8:92)	NA	NA	O82204	60S ribosomal protein L28-1	AT2G19730.3	Ribosomal L28e protein family 	LOC_Os02g57540.1	"60S ribosomal protein L28-1, putative, expressed"	Medtr2g121690.1	Ribosomal L28e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.609.2.S1_at	B	B1S	POPTR_0001s19490	POPTR_0001s19490 (6:197)	NA	NA	O82204	60S ribosomal protein L28-1	AT2G19730.3	Ribosomal L28e protein family 	LOC_Os01g51020.1	"60S ribosomal protein L28-1, putative, expressed"	Medtr2g121690.1	Ribosomal L28e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.60924.1.S1_at	B	B1S	POPTR_0016s10050	POPTR_0016s10050 (5:517)	NA	NA	Q7DMA9	Peptidyl-prolyl isomerase PASTICCINO1	AT3G54010.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os03g25140.1	"peptidyl-prolyl isomerase PASTICCINO1, putative, expressed"	Medtr4g073460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.60959.1.S1_at	B	B1S	POPTR_0007s15170	POPTR_0007s15170 (4:262)	scaffold_7:14784720-14785157(+) (10)	NA	Q6R2K1	Protein STRUBBELIG-RECEPTOR FAMILY 5	AT1G78980.1	STRUBBELIG-receptor family 5 	LOC_Os07g42626.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g163300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.60990.1.S1_at	B	B1S	POPTR_0014s02290	POPTR_0014s02290 (8:344)	NA	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.60992.1.S1_at	B	B3S	POPTR_0003s16845	POPTR_0003s16845 (3:4898)//POPTR_0003s16840 (2:301)//POPTR_0003s16870 (2:301)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.60993.1.S1_at	B	B1S	POPTR_0018s14100	POPTR_0018s14100 (0:327)	NA	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT1G58190.2	receptor like protein 9 	LOC_Os04g55440.1	"Cf-4A protein, putative, expressed"	Medtr3g166660.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.61037.1.S1_at	B	B1S	POPTR_0007s01550	POPTR_0007s01550 (3:184)	NA	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr8g109760.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6105.3.S1_at	B	B1S	POPTR_0006s28200	POPTR_0006s28200 (5:460)	NA	NA	Q9SK39	Probable steroid-binding protein 3	AT2G24940.1	membrane-associated progesterone binding protein 2 	LOC_Os02g55060.2	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g138500.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.6105.4.S1_at	B	B1S	POPTR_0018s02770	POPTR_0018s02770 (0:392)	NA	NA	Q9SK39	Probable steroid-binding protein 3	AT2G24940.1	membrane-associated progesterone binding protein 2 	LOC_Os02g55060.2	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g138500.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.61055.1.S1_at	B	B1S	POPTR_0017s05650	POPTR_0017s05650 (8:452)	NA	NA	NA	NA	AT3G59520.1	RHOMBOID-like protein 13 	LOC_Os01g67040.2	"OsRhmbd5 - Putative Rhomboid homologue, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.61060.1.S1_at	B	B1S	POPTR_0006s03490	POPTR_0006s03490 (4:545)	NA	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr7g020920.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.61099.1.S1_at	B	B1S	POPTR_0008s05150	POPTR_0008s05150 (6:302)	scaffold_8:2987896-2988292(-) (9)	NA	Q54JE4	"2-oxoglutarate dehydrogenase, mitochondrial"	AT3G55410.1	"2-oxoglutarate dehydrogenase, E1 component "	LOC_Os07g49520.1	"2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed"	Medtr7g025160.1	"2-oxoglutarate dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.6111.2.S1_at	B	B1S	POPTR_0004s12240	POPTR_0004s12240 (8:445)	NA	NA	P53536	"Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic"	AT3G29320.1	"Glycosyl transferase, family 35 "	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr6g014750.1	"Glycosyl transferase, family 35 "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
PtpAffx.61156.1.A1_at	B	B1S	POPTR_0009s12900	POPTR_0009s12900 (3:277)	NA	NA	Q755P0	Protein AF-9 homolog	AT5G45600.1	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr4g097630.1	YEATS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.61176.1.S1_at	B	B1S	POPTR_2061s00200	POPTR_2061s00200 (2:133)	NA	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.61189.1.A1_at	B	B1S	POPTR_0015s13260	POPTR_0015s13260 (0:297)	NA	NA	Q9SN74	Transcription factor bHLH47	AT3G47640.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g43530.2	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g112550.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.61198.1.S1_a_at	B	B1S	POPTR_0001s28350	POPTR_0001s28350 (6:299)	NA	NA	NA	NA	AT4G03250.1	Homeodomain-like superfamily protein 	LOC_Os01g48170.1	homeobox domain containing protein	Medtr5g096920.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.61208.1.S1_at	B	B1S	POPTR_0011s11770	POPTR_0011s11770 (1:131)	NA	NA	Q9S758	Squamosa promoter-binding-like protein 5	AT3G15270.1	squamosa promoter binding protein-like 5 	LOC_Os07g32170.1	"OsSPL13 - SBP-box gene family member, expressed"	Medtr2g017680.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.6121.2.S1_at	B	B1S	POPTR_0005s23140	POPTR_0005s23140 (2:832)	NA	NA	Q75HV0	Cyclin-P3-1	AT3G63120.1	cyclin p1;1 	LOC_Os05g33040.3	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61240.1.A1_at	B	B1S	POPTR_0013s03990	POPTR_0013s03990 (8:830)	NA	NA	Q9SR07	Probable WRKY transcription factor 39	AT3G04670.1	WRKY DNA-binding protein 39 	LOC_Os12g40570.2	"WRKY transcription factor, putative, expressed"	Medtr1g010400.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.61246.1.S1_at	B	B1S	POPTR_0008s20850	POPTR_0008s20850 (6:2435)	NA	NA	O65041	NEDD8-activating enzyme E1 catalytic subunit	AT5G19180.1	E1 C-terminal related 1 	LOC_Os01g16540.1	"NEDD8-activating enzyme E1 catalytic subunit, putative, expressed"	Medtr8g146250.1	"Ubiquitin-activating enzyme, E1 "	GO:0045116|protein neddylation||GO:0044260|cellular macromolecule metabolic process	GO:0016881|acid-amino acid ligase activity||GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.61263.1.A1_at	B	B1S	POPTR_0017s10470	POPTR_0017s10470 (5:136)	NA	NA	NA	NA	AT5G59710.1	VIRE2 interacting protein 2 	LOC_Os03g52594.3	"CCR4-NOT transcription factor, putative, expressed"	Medtr2g114150.1	NOT2/NOT3/NOT5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.61266.1.S1_at	B	B1S	POPTR_0001s36490	POPTR_0001s36490 (4:892)	scaffold_1:35127557-35129387(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61285.1.A1_at	B	B1S	POPTR_0008s08680	POPTR_0008s08680 (6:1033)	NA	NA	Q8SAY0	"50S ribosomal protein L18, chloroplastic"	AT1G14205.1	Ribosomal L18p/L5e family protein 	LOC_Os03g07340.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr5g044540.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61296.1.S1_at	B	B1S	POPTR_0002s03980	POPTR_0002s03980 (7:216)	NA	NA	Q52KD8	Chromatin modification-related protein MEAF6	AT4G14385.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os12g20310.1	"sarcoma antigen NY-SAR-91, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61296.3.A1_at	B	B1S	POPTR_0005s24530	POPTR_0005s24530 (8:548)	NA	NA	Q52KD8	Chromatin modification-related protein MEAF6	AT4G14385.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os12g20310.2	"sarcoma antigen NY-SAR-91, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61301.1.A1_at	B	B1S	POPTR_0003s19470	POPTR_0003s19470 (8:266)	NA	NA	NA	NA	AT3G54390.1	sequence-specific DNA binding transcription factors 	LOC_Os09g38570.1	"transcription factor like protein, putative, expressed"	Medtr3g005850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61309.1.A1_at	B	B1S	POPTR_0014s16000	POPTR_0014s16000 (5:133)	scaffold_14:12073059-12073561(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61331.1.A1_at	B	B1S	POPTR_0009s07040	POPTR_0009s07040 (1:174)	NA	NA	Q93WX6	"Cysteine desulfurase 2, chloroplastic"	AT1G08490.1	chloroplastic NIFS-like cysteine desulfurase 	LOC_Os12g18900.1	"aminotransferase, putative, expressed"	Medtr3g105250.1	"Aminotransferase, class V; "	GO:0008152|metabolic process	NA	NA
PtpAffx.61335.1.S1_at	B	B1S	POPTR_0011s10580	POPTR_0011s10580 (4:322)	NA	NA	Q9SRR1	F-box/LRR-repeat protein 12	AT3G07550.2	RNI-like superfamily protein 	LOC_Os11g16280.1	"F-box domain containing protein, expressed"	Medtr7g138390.2	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.61458.1.A1_at	B	B1S	POPTR_0013s06790	POPTR_0013s06790 (6:790)	NA	NA	NA	NA	AT5G17670.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g03720.1	expressed protein	Medtr3g163900.1	PGAP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61572.2.S1_at	B	B1S	POPTR_0008s10240	POPTR_0008s10240 (6:743)	NA	NA	Q9SEE5	Galactokinase	AT3G06580.1	Mevalonate/galactokinase family protein 	LOC_Os03g61710.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr8g136890.1	GHMP kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.6158.1.S1_at	B	B1S	POPTR_0002s04120	POPTR_0002s04120 (3:79)	NA	NA	NA	NA	AT2G31270.1	homolog of yeast CDT1 A 	LOC_Os04g10650.1	"CDT1A - Putative DNA replication initiation protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.618.11.S1_at	B	B2S	POPTR_0001s03260	POPTR_0001s07670 (4:145)//POPTR_0001s03260 (4:145)	NA	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
PtpAffx.618.14.A1_at	B	B1S	POPTR_0001s07670	POPTR_0001s07670 (0:127)	NA	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
PtpAffx.61998.1.A1_at	B	B1S	POPTR_0018s10630	POPTR_0018s10630 (3:98)	scaffold_18:11519101-11519428(+) (11)	NA	O31673	ATP-dependent Clp protease ATP-binding subunit ClpE	AT5G57710.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g15230.1	"heat shock protein-related, putative, expressed"	Medtr8g127930.1	"ATP binding, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62010.1.A1_at	B	B1A	POPTR_0002s05730	POPTR_0002s05730 (3:303)	NA	NA	NA	NA	NA	NA	LOC_Os07g06644.3	expressed protein	Medtr5g097840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62042.1.A1_at	B	B1S	POPTR_0012s01100	POPTR_0012s01100 (0:128)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6218.2.S1_at	B	B1S	POPTR_0003s12190	POPTR_0003s12190 (8:1868)	NA	NA	Q9LN77	F-box protein PP2-A12	AT1G12710.1	phloem protein 2-A12 	LOC_Os03g02550.1	"OsFBX76 - F-box domain containing protein, expressed"	Medtr5g010960.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6221.1.S1_at	B	B1S	POPTR_0002s23180	POPTR_0002s23180 (8:401)	NA	NA	Q67YI9	Clathrin interactor EPSIN 2	AT2G43160.1	ENTH/VHS family protein 	LOC_Os02g56270.1	"ENTH domain containing protein, expressed"	Medtr7g005820.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62437.1.A1_at	B	B1A	POPTR_0001s28720	POPTR_0001s28720 (3:191)	scaffold_1:27494687-27495222(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g075860.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62503.1.A1_at	B	B1S	POPTR_0001s23400	POPTR_0001s23400 (8:368)	NA	NA	C1DKY7	Siroheme synthase	AT5G40850.1	urophorphyrin methylase 1 	LOC_Os01g44050.1	"siroheme synthase, putative, expressed"	Medtr3g031440.1	Uroporphiryn-III C-methyltransferase; 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.62533.1.A1_at	B	B1S	POPTR_0019s10010	POPTR_0019s10010 (8:8510)	NA	NA	P93422	Histidyl-tRNA synthetase	AT3G02760.1	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os05g05840.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr5g099140.1	"tRNA synthetase, class II (G, H, P and S) "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.62536.1.A1_at	B	B1S	POPTR_0004s04400	POPTR_0004s04400 (8:1236)	NA	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62561.1.A1_at	B	B1S	POPTR_0010s22730	POPTR_0010s22730 (4:234)	scaffold_10:19537227-19537628(+) (11)	NA	Q94KB7	MLO-like protein 6	AT1G61560.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr2g110820.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.62623.1.A1_at	B	B1S	POPTR_0004s16200	POPTR_0004s16200 (5:194)	NA	NA	NA	NA	AT1G63850.1	BTB/POZ domain-containing protein 	LOC_Os03g51380.1	expressed protein	Medtr4g095540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6269.1.S1_at	B	B1S	POPTR_0001s23850	POPTR_0001s23850 (1:300)	scaffold_1:23233657-23234059(+) (11)	NA	NA	NA	AT2G44300.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g07100.1	"LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g105470.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62741.1.A1_at	B	B1S	POPTR_0001s14240	POPTR_0001s14240 (4:140)	NA	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62759.1.A1_at	B	B1S	POPTR_0009s07600	POPTR_0009s07600 (2:588)	scaffold_9:7065021-7066722(+) (11)	NA	NA	NA	AT4G03250.1	Homeodomain-like superfamily protein 	LOC_Os01g48170.1	homeobox domain containing protein	Medtr5g096920.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.62764.1.A1_at	B	B1S	POPTR_0005s23880	POPTR_0005s23880 (3:124)	NA	NA	Q96PP9	Guanylate-binding protein 4	AT2G38840.1	Guanylate-binding family protein 	LOC_Os03g58240.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.62766.1.A1_at	B	B1S	POPTR_0002s19240	POPTR_0002s19240 (1:2107)	NA	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os01g22870.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
PtpAffx.62767.1.A1_at	B	B1S	POPTR_0002s14630	POPTR_0002s14630 (8:283)	scaffold_2:10892404-10895472(+) (9)	NA	Q6NKQ9	Cysteine-rich repeat secretory protein 15	AT3G60720.1	plasmodesmata-located protein 8 	LOC_Os02g43000.1	"cysteine-rich repeat secretory protein 15 precursor, putative, expressed"	Medtr5g085800.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62768.1.A1_at	B	B1S	POPTR_0005s24550	POPTR_0005s24550 (6:266)	NA	NA	Q7XBH4	Myb-related protein Myb4	AT3G23250.1	myb domain protein 15 	LOC_Os04g43680.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.62840.1.A1_at	B	B1S	POPTR_0019s05290	POPTR_0019s05290 (0:14)	scaffold_19:5559842-5560930(+) (9)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g43050.1	"disease resistance protein RGA2, putative, expressed"	Medtr3g039770.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.62865.1.A1_at	B	B1S	POPTR_0016s06140	POPTR_0016s06140 (3:333)	scaffold_16:4079372-4079882(-) (11)	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.62893.1.A1_a_at	B	B1S	POPTR_0002s24690	POPTR_0002s24690 (1:49)	scaffold_2:21979061-21979842(+) (11)	NA	NA	NA	AT5G48655.3	RING/U-box superfamily protein 	LOC_Os01g69040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63014.1.A1_at	B	B1S	POPTR_0018s11590	POPTR_0018s11590 (8:796)	NA	NA	NA	NA	AT4G30900.2	DNAse I-like superfamily protein 	LOC_Os05g19974.1	"endonuclease/exonuclease/phosphatase family protein, putative, expressed"	Medtr8g145310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63163.1.A1_at	B	B1S	POPTR_0019s10790	POPTR_0019s10790 (1:1619)	NA	NA	NA	NA	AT1G22520.1	Domain of unknown function (DUF543) 	LOC_Os03g62420.1	expressed protein	Medtr3g012620.1	Protein of unknown function DUF543 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63222.1.S1_at	B	B1S	POPTR_0013s15570	POPTR_0013s15570 (2:105)	scaffold_13:15513415-15515450(-) (11)	NA	P46269	Cytochrome b-c1 complex subunit 8	AT3G10860.1	"Cytochrome b-c1 complex, subunit 8 protein "	LOC_Os06g07969.1	"cytochrome b-c1 complex subunit 8, putative, expressed"	Medtr5g083510.1	"Cytochrome b-c1 complex subunit 8 (exp=-1; wgp=-1; cg=-1; clo, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63293.2.S1_at	B	B1S	POPTR_0019s03660	POPTR_0019s03660 (0:445)	NA	NA	Q86YJ7	Ankyrin repeat domain-containing protein 13B	AT3G04470.1	Ankyrin repeat family protein 	LOC_Os02g56530.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6333.1.S1_at	B	B1A	POPTR_0009s10090	POPTR_0009s10090 (8:239)	NA	NA	P43297	Cysteine proteinase RD21a	AT1G47128.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.6334.2.S1_at	B	B1S	POPTR_0004s22060	POPTR_0004s22060 (8:505)	scaffold_4:20997999-20998549(+) (11)	NA	NA	NA	AT5G60680.1	"Protein of unknown function, DUF584 "	LOC_Os04g43990.1	"DUF584 domain containing protein, putative, expressed"	Medtr4g081830.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63341.1.S1_at	B	B1S	POPTR_0005s24660	POPTR_0005s24660 (8:180)	NA	NA	NA	NA	AT2G31140.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os04g01240.1	"serine-type peptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63355.1.S1_at	B	B1A	POPTR_0013s03780	POPTR_0013s03780 (3:4531)	scaffold_13:2440192-2445209(-) (10)	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.63365.1.A1_at	B	B1S	POPTR_0014s02260	POPTR_0014s02260 (0:353)	NA	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr5g016440.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63616.1.A1_at	B	B1S	POPTR_0001s41650	POPTR_0001s41650 (1:25)	scaffold_1:41362020-41362206(+) (10)	NA	Q54WM0	Transmembrane protein 184 homolog DDB_G0279555	AT4G21570.1	Protein of unknown function (DUF300) 	LOC_Os07g32230.1	"domain of unknown function domain containing protein, expressed"	Medtr2g014110.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63660.1.A1_at	B	B1S	POPTR_0005s12340	POPTR_0005s12340 (8:481)	NA	NA	Q8GVE5	Tubby-like F-box protein 2	AT2G18280.2	tubby like protein 2 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63665.1.A1_at	B	B1S	POPTR_0005s21710	POPTR_0005s21710 (7:441)	NA	NA	Q9SB58	Probable S-acyltransferase At4g24630	AT4G24630.1	DHHC-type zinc finger family protein 	LOC_Os05g36090.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr1g124850.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.63670.1.A1_at	B	B1S	POPTR_0014s15870	POPTR_0014s15870 (2:173)	NA	NA	Q84JU4	Protein-tyrosine-phosphatase IBR5	AT2G04550.1	indole-3-butyric acid response 5 	LOC_Os06g20340.1	"dual specificity protein phosphatase, putative, expressed"	Medtr5g092050.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.63671.1.A1_at	B	B1S	POPTR_0018s09480	POPTR_0018s09480 (1:39)	NA	NA	O94631	"rRNA methyltransferase, mitochondrial"	AT2G19870.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os01g53890.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr4g159890.1	"RNA methyltransferase TrmH, group 3 "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.63676.1.A1_at	B	B1S	POPTR_0016s10420	POPTR_0016s10420 (3:539)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g018920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63702.1.A1_at	B	B1S	POPTR_0004s09710	POPTR_0004s09710 (8:358)	scaffold_4:8236232-8236735(+) (11)	NA	Q39265	Zinc finger protein 6	AT1G67030.1	zinc finger protein 6 	LOC_Os01g32920.1	"ZOS1-08 - C2H2 zinc finger protein, expressed"	Medtr5g067950.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63726.1.A1_at	B	B1S	POPTR_0006s28170	POPTR_0006s28170 (8:407)	NA	NA	NA	NA	AT2G24960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g03570.1	"retrotransposon, putative, centromere-specific"	Medtr5g022470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63735.1.S1_at	B	B1S	POPTR_0009s09520	POPTR_0009s09520 (0:272)	NA	NA	O74503	Upstream activation factor subunit spp27	AT2G14880.1	SWIB/MDM2 domain superfamily protein 	LOC_Os12g32280.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63747.1.A1_at	B	B1S	POPTR_0014s01720	POPTR_0014s01720 (8:1815)	scaffold_14:1612477-1614292(-) (9)	NA	Q9H1I8	Activating signal cointegrator 1 complex subunit 2	AT1G27752.1	Ubiquitin system component Cue protein 	LOC_Os03g10750.1	"CUE domain containing protein, expressed"	Medtr1g023480.1	"T22C5.20, related "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.63764.1.S1_at	B	B1S	POPTR_0002s12030	POPTR_0002s12030 (6:281)	NA	NA	NA	NA	AT1G49890.1	Family of unknown function (DUF566)  	LOC_Os03g10820.1	expressed protein	Medtr1g023430.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6377.1.S1_at	B	B1S	POPTR_0002s22560	POPTR_0002s22560 (6:766)	NA	NA	O80860	"ATP-dependent zinc metalloprotease FTSH 2, chloroplastic"	AT2G30950.1	FtsH extracellular protease family 	LOC_Os06g45820.1	"OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.6377.3.S1_at	B	B1S	POPTR_0002s22560	POPTR_0002s22560 (5:203)	NA	NA	O80860	"ATP-dependent zinc metalloprotease FTSH 2, chloroplastic"	AT2G30950.1	FtsH extracellular protease family 	LOC_Os06g45820.1	"OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.63924.1.S1_at	B	B1S	POPTR_0006s16150	POPTR_0006s16150 (5:1422)	scaffold_6:14032665-14034258(-) (9)	NA	Q94LW6	Probable sulfate transporter 3.5	AT5G19600.1	sulfate transporter 3;5 	LOC_Os01g52130.1	"sulfate transporter, putative, expressed"	Medtr6g102060.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.63957.1.S1_at	B	B1S	POPTR_0002s15080	POPTR_0002s15080 (8:613)	NA	NA	Q9H8Y5	Ankyrin repeat and zinc finger domain-containing protein 1	AT1G01930.1	zinc finger protein-related 	LOC_Os04g48520.1	"ZOS4-12 - C2H2 zinc finger protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63997.1.S1_at	B	B1S	POPTR_0008s10190	POPTR_0008s10190 (7:406)	NA	NA	Q96PB1	CAS1 domain-containing protein 1	AT3G06550.3	O-acetyltransferase family protein 	LOC_Os03g19970.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64.3.S1_at	B	B1S	POPTR_0008s23020	POPTR_0008s23020 (0:99)	NA	NA	Q9SSR1	"DCC family protein At1g52590, chloroplastic"	AT1G52590.1	Putative thiol-disulphide oxidoreductase DCC 	LOC_Os01g07800.2	"thiol-disulphide oxidoreductase DCC, putative, expressed"	Medtr2g126240.1	Putative thiol-disulphide oxidoreductase DCC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6407.2.A1_at	B	B1S	POPTR_0022s00770	POPTR_0022s00770 (5:215)	NA	NA	Q93W20	"NifU-like protein 2, chloroplastic"	AT5G49940.1	NIFU-like protein 2 	LOC_Os11g07916.1	"nifU, putative, expressed"	Medtr2g005660.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.64104.1.S1_at	B	B1S	POPTR_0019s11630	POPTR_0019s11630 (5:235)	NA	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.64132.1.S1_at	B	B1S	POPTR_0004s24170	POPTR_0004s24170 (8:450)	NA	NA	Q07423	Hexose carrier protein HEX6	AT5G61520.1	Major facilitator superfamily protein 	LOC_Os09g09520.1	"transporter family protein, putative, expressed"	Medtr3g009520.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.64211.1.S1_at	B	B1S	POPTR_0006s20310	POPTR_0006s20310 (8:202)	NA	NA	P84634	Dicer-like protein 4	AT5G20320.1	dicer-like 4 	LOC_Os04g43050.1	"Dicer, putative, expressed"	Medtr3g139020.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0004525|ribonuclease III activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.643.1.A1_at	B	B1S	POPTR_0004s22270	POPTR_0004s22270 (3:386)	NA	NA	Q12873	Chromodomain-helicase-DNA-binding protein 3	AT1G08060.2	ATP-dependent helicase family protein 	LOC_Os06g01320.1	"chromo domain containing protein, expressed"	fpc265_22.1	"Helicase, C-terminal fpc265 101840-115910 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64380.1.A1_at	B	B1S	POPTR_0010s16750	POPTR_0010s16750 (7:196)	scaffold_10:15611667-15611835(+) (10)	NA	Q9BRT8	COBW domain-containing protein 1	AT1G26520.1	Cobalamin biosynthesis CobW-like protein 	LOC_Os07g40790.2	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64380.1.A1_s_at	B	B1S	POPTR_0010s16750	POPTR_0010s16750 (7:245)	scaffold_10:15611600-15611928(+) (11)	NA	Q9BRT8	COBW domain-containing protein 1	AT1G26520.1	Cobalamin biosynthesis CobW-like protein 	LOC_Os07g40790.2	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.644.1.A1_a_at	B	B1S	POPTR_0009s07310	POPTR_0009s07310 (6:227)	NA	NA	NA	NA	AT5G12240.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages. 	LOC_Os07g44744.1	expressed protein	Medtr5g096100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64491.1.A1_at	B	B1S	POPTR_0013s03730	POPTR_0013s03730 (8:511)	NA	NA	NA	NA	AT4G29250.1	HXXXD-type acyl-transferase family protein 	LOC_Os03g53360.1	"transferase family protein, putative, expressed"	Medtr7g140830.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64509.1.S1_at	B	B1S	POPTR_0009s02020	POPTR_0009s02020 (7:468)	scaffold_9:2601572-2602476(-) (11)	NA	Q653H7	Auxin response factor 18	AT2G28350.1	auxin response factor 10 	LOC_Os06g47150.3	"auxin response factor 18, putative, expressed"	Medtr2g110140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.64572.1.S1_at	B	B1S	POPTR_0002s24230	POPTR_0002s24230 (6:367)	NA	NA	NA	NA	AT5G48830.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g31070.1	expressed protein	Medtr7g064770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64627.1.A1_at	B	B1S	POPTR_0001s00340	POPTR_0001s00340 (7:525)	NA	NA	NA	NA	AT1G62530.2	Plant protein of unknown function (DUF863) 	LOC_Os10g40580.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64779.1.S1_at	B	B1S	POPTR_0463s00210	POPTR_0463s00210 (6:444)	NA	NA	NA	NA	AT1G68430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g140410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64819.1.S1_at	B	B1S	POPTR_0011s14500	POPTR_0011s14500 (8:722)	NA	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30210.1	expressed protein	Medtr5g101150.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.64827.1.S1_at	B	B1S	POPTR_0010s07650	POPTR_0010s07650 (7:2282)	NA	NA	A8KBE0	Oxidation resistance protein 1	AT2G05590.2	TLD-domain containing nucleolar protein 	LOC_Os06g11790.1	"TLD family protein, putative, expressed"	Medtr1g065060.1	TLDc 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6485.2.S1_at	B	B1S	POPTR_0008s17030	POPTR_0008s17030 (7:293)	NA	NA	P48809	Heterogeneous nuclear ribonucleoprotein 27C	AT2G33410.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os10g33230.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.64894.1.S1_at	B	B1S	POPTR_0001s09770	POPTR_0001s09770 (3:251)	NA	NA	Q01332	Beta-carotene hydroxylase	AT4G25700.1	beta-hydroxylase 1 	LOC_Os03g03370.1	"fatty acid hydroxylase, putative, expressed"	Medtr1g126460.2	Carotene hydroxylase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.64912.1.A1_at	B	B1A	POPTR_0002s09330	POPTR_0002s09330 (8:432)	NA	NA	P78820	Acetyl-CoA carboxylase	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
PtpAffx.65055.1.A1_at	B	B1S	POPTR_0008s16320	POPTR_0008s16320 (8:932)	NA	NA	Q8RY18	MATH domain-containing protein At5g43560	AT1G04300.1	TRAF-like superfamily protein 	LOC_Os12g40520.1	"MATH domain containing protein, expressed"	Medtr1g064840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65084.1.A1_at	B	B1S	POPTR_0004s10090	POPTR_0004s10090 (6:521)	NA	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G16080.1	carboxyesterase 17 	LOC_Os03g15270.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.65130.1.S1_at	B	B1S	POPTR_0004s12360	POPTR_0004s12360 (7:294)	NA	NA	Q8YM56	Chaperone protein ClpB 2	AT5G15450.1	casein lytic proteinase B3 	LOC_Os03g31300.1	"chaperone protein clpB 1, putative, expressed"	Medtr6g014150.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.65144.1.A1_at	B	B1S	POPTR_0016s02130	POPTR_0016s02130 (6:251)	NA	NA	NA	NA	AT3G22270.1	Topoisomerase II-associated protein PAT1 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65214.1.A1_at	B	B1S	POPTR_0002s03030	POPTR_0002s03030 (0:307)	NA	NA	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.65220.1.A1_at	B	B1S	POPTR_0016s05160	POPTR_0016s05160 (8:1027)	NA	NA	Q3EAI1	Transcription factor bHLH60	AT3G57800.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os06g41060.1	"helix-loop-helix DNA-binding, putative, expressed"	Medtr1g071420.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65221.1.A1_at	B	B1S	POPTR_0172s00210	POPTR_0172s00210 (0:151)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g010530.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65236.1.A1_at	B	B1S	POPTR_0010s09640	POPTR_0010s09640 (8:398)	NA	NA	NA	NA	AT3G22530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g07670.1	expressed protein	Medtr5g006510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6524.3.S1_at	B	B1S	POPTR_0005s03670	POPTR_0005s03670 (6:214)	NA	NA	Q5KEW5	Mitochondrial Rho GTPase 1	AT5G27540.2	MIRO-related GTP-ase 1 	LOC_Os03g59590.1	"ATP/GTP/Ca++ binding protein, putative, expressed"	Medtr1g086440.1	"Calcium-binding EF-hand; Ras small GTPase, Rab type; ; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.6527.1.A1_at	B	B1S	POPTR_0005s08070	POPTR_0005s08070 (5:294)	scaffold_5:5558758-5559279(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65294.1.S1_at	B	B1S	POPTR_0001s46220	POPTR_0001s46220 (8:362)	NA	NA	NA	NA	AT3G12955.1	SAUR-like auxin-responsive protein family  	LOC_Os12g41600.1	"OsSAUR57 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g133100.1	"auxin-responsive protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.653.25.S1_at	B	B1A	POPTR_0002s07080	POPTR_0002s07080 (0:513)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65352.1.S1_at	B	B1S	POPTR_0016s08930	POPTR_0016s08930 (7:899)	NA	NA	B9IJ21	"Adenylosuccinate synthetase, chloroplastic"	AT3G57610.1	adenylosuccinate synthase 	LOC_Os03g07840.1	"adenylosuccinate synthetase, chloroplast precursor, putative, expressed"	Medtr7g110920.1	Adenylosuccinate synthetase 	GO:0006164|purine nucleotide biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004019|adenylosuccinate synthase activity||GO:0000287|magnesium ion binding||GO:0005525|GTP binding	NA
PtpAffx.65361.1.S1_at	B	B1S	POPTR_0008s02080	POPTR_0008s02080 (6:1764)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65376.1.S1_at	B	B1S	POPTR_0005s01490	POPTR_0005s01490 (8:511)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65397.2.A1_at	B	B1S	POPTR_0001s41720	POPTR_0001s41720 (8:1263)	NA	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.65405.1.S1_at	B	B1S	POPTR_0005s21940	POPTR_0005s21940 (8:160)	NA	NA	Q9Y259	Choline/ethanolamine kinase	AT4G09760.1	Protein kinase superfamily protein 	LOC_Os01g51920.1	"phosphotransferase, putative, expressed"	Medtr3g005000.1	"Choline kinase, N-terminal; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65505.1.S1_at	B	B1S	POPTR_0005s15430	POPTR_0005s15430 (7:2270)	NA	NA	Q39208	Delta(7)-sterol-C5(6)-desaturase 1	AT3G02580.1	sterol 1 	LOC_Os01g04260.1	"fatty acid hydroxylase, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.6560.1.S1_at	B	B1S	POPTR_0001s01760	POPTR_0001s01760 (2:83)	NA	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65702.1.A1_at	B	B1S	POPTR_0009s06860	POPTR_0009s06860 (5:393)	NA	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr6g093440.1	Ribosomal protein L31e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.6581.10.S1_at	B	B1S	POPTR_0008s14320	POPTR_0008s14320 (7:517)	NA	NA	Q9ZUM0	Zinc finger CCCH domain-containing protein 17	AT2G02160.1	CCCH-type zinc finger family protein 	LOC_Os04g57600.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119790.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.65886.1.S1_at	B	B1S	POPTR_0015s11340	POPTR_0015s11340 (8:286)	NA	NA	Q0E0Y3	RNA pseudourine synthase 7	AT5G51140.1	Pseudouridine synthase family protein 	LOC_Os02g30840.1	"RNA pseudouridine synthase, putative, expressed"	Medtr3g150910.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.65892.1.S1_at	B	B1S	POPTR_0014s10830	POPTR_0014s10830 (5:133)	NA	NA	P18549	Isopenicillin N epimerase	AT3G62130.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g18640.1	"aminotransferase, putative, expressed"	Medtr1g105840.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65895.1.S1_at	B	B1S	POPTR_0013s07090	POPTR_0013s07090 (0:5)	NA	NA	NA	NA	AT3G03560.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.65957.1.S1_at	B	B1S	POPTR_0005s24010	POPTR_0005s24010 (1:117)	NA	NA	Q9FMU5	U3 small nucleolar RNA-associated protein 18 homolog	AT5G14050.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g41190.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g009910.1	Inorganic pyrophosphatase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6596.4.S1_a_at	B	B1S	POPTR_0010s02960	POPTR_0010s02960 (7:2389)	scaffold_10:3486686-3489270(+) (11)	NA	Q9FGK3	Putative MO25-like protein At5g47540	AT5G18940.1	Mo25 family protein 	LOC_Os07g45280.1	"Mo25, putative, expressed"	Medtr2g026120.1	Mo25-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66002.1.S1_at	B	B1S	POPTR_0006s07260	POPTR_0006s07260 (4:286)	NA	NA	Q42191	Mitochondrial inner membrane protein OXA1	AT5G62050.1	homolog of yeast oxidase assembly 1 (OXA1) 	LOC_Os10g37690.1	"inner membrane protein, putative, expressed"	AC233677_14.1	60 kDa inner membrane insertion protein AC233677.2 80748-73714 E EGN_Mt090430 200	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.66080.1.S1_at	B	B1S	POPTR_0015s00640	POPTR_0015s00640 (8:538)	NA	NA	Q84K00	NAC domain-containing protein 78	AT3G49530.1	NAC domain containing protein 62 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.661.1.S1_at	B	B3A	POPTR_0001s23730	POPTR_0001s23740 (0:436)//POPTR_0001s23730 (6:383)//POPTR_0001s23750 (1:365)	scaffold_1:23126440-23129911(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66128.1.S1_at	B	B1S	POPTR_0001s26100	POPTR_0001s26100 (8:661)	scaffold_1:25189125-25189813(-) (11)	NA	P27057	Protein GAST1	AT1G74670.1	Gibberellin-regulated family protein 	LOC_Os05g31280.1	"GASR5 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr7g107650.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.662.3.A1_at	B	B1S	POPTR_0009s12400	POPTR_0009s12400 (4:1725)	NA	NA	Q9SDZ9	Purple acid phosphatase 2	AT2G16430.2	purple acid phosphatase 10 	LOC_Os01g56880.1	"purple acid phosphatase precursor, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.66238.1.S1_at	B	B1S	POPTR_0011s05030	POPTR_0011s05030 (8:465)	NA	NA	NA	NA	AT3G47160.1	RING/U-box superfamily protein 	LOC_Os07g46700.3	"zinc finger, RING-type, putative, expressed"	AC233659_30.2	"Zinc finger, RING-type AC233659.1 131567-127095 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6627.1.A1_at	B	B1S	POPTR_0002s06320	POPTR_0002s06320 (4:260)	NA	NA	P0C031	Ubiquitin-NEDD8-like protein RUB2	AT1G31340.1	related to ubiquitin 1 	LOC_Os06g44080.1	"ubiquitin family protein, putative, expressed"	Medtr5g100010.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66306.1.S1_at	B	B1S	POPTR_0018s04660	POPTR_0018s04660 (5:478)	scaffold_18:3948522-3949173(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66377.1.S1_at	B	B2S	POPTR_0011s11810	POPTR_0131s00210 (5:544)//POPTR_0011s11810 (5:544)	NA	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G23560.1	MATE efflux family protein 	LOC_Os07g31884.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.6641.2.S1_at	B	B1S	POPTR_0005s04640	POPTR_0005s04640 (8:171)	NA	NA	B9DHD7	Vesicle-associated protein 2-2	AT1G08820.2	vamp/synaptobrevin-associated protein 27-2 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr8g139690.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.6645.3.S1_s_at	B	B3S	POPTR_0014s05270	POPTR_0014s05290 (8:62)//POPTR_0014s05270 (8:62)//POPTR_0403s00200 (8:61)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT3G60470.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010620.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66460.2.A1_at	B	B1A	POPTR_0005s27390	POPTR_0005s27390 (4:360)	NA	NA	O49596	High mobility group B protein 2	AT1G20693.3	high mobility group B2 	LOC_Os06g51220.4	"HMG1/2, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.66469.1.A1_at	B	B1A	POPTR_0003s21000	POPTR_0003s21000 (1:58)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66469.1.A1_s_at	B	B1A	POPTR_0003s21000	POPTR_0003s21000 (0:5)	scaffold_3:19332082-19332538(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66664.1.S1_at	B	B1S	POPTR_0014s09580	POPTR_0014s09580 (5:117)	NA	NA	NA	NA	AT2G46550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g30930.1	expressed protein	Medtr1g008960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66668.1.S1_at	B	B1S	POPTR_0009s10330	POPTR_0009s10330 (7:1088)	NA	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT3G19300.1	Protein kinase superfamily protein 	LOC_Os04g59320.1	"protein kinase domain containing protein, expressed"	Medtr4g130010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.66675.1.S1_at	B	B1S	POPTR_0008s03580	POPTR_0008s03580 (7:307)	NA	NA	NA	NA	AT2G36985.1	DVL family protein 	NA	NA	Medtr2g117080.1	DVL 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66687.1.S1_at	B	B1S	POPTR_0012s03390	POPTR_0012s03390 (8:1106)	NA	NA	Q0WQQ1	Probable ADP-ribosylation factor GTPase-activating protein AGD15	AT3G17660.1	ARF-GAP domain 15 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr6g090080.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.667.1.S1_at	B	B2S	POPTR_0014s05770	POPTR_0014s05780 (1:263)//POPTR_0014s05770 (5:200)	scaffold_14:4313052-4314789(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66709.1.S1_at	B	B1S	POPTR_0009s15090	POPTR_0009s15090 (8:413)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66787.1.S1_at	B	B1S	POPTR_0003s16450	POPTR_0003s16450 (2:480)	NA	NA	Q9XIC7	Somatic embryogenesis receptor kinase 2	AT5G21090.1	Leucine-rich repeat (LRR) family protein 	LOC_Os08g07760.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g005220.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66789.1.S1_at	B	B1S	POPTR_0002s13300	POPTR_0002s13300 (7:280)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66809.2.A1_at	B	B1S	POPTR_0010s04560	POPTR_0010s04560 (8:468)	NA	NA	Q8VXV4	Chaperone protein dnaJ 16	AT1G24120.1	ARG1-like 1 	LOC_Os02g50760.2	"heat shock protein DnaJ, putative, expressed"	Medtr5g036860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.66816.1.S1_at	B	B1S	POPTR_0015s09170	POPTR_0015s09170 (5:1155)	NA	NA	Q9CWP6	Motile sperm domain-containing protein 2	AT5G63060.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g21630.1	"SEC14 cytosolic factor family protein, putative, expressed"	CU651566_8.2	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal CU651566.9 36825-34547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.66858.1.S1_at	B	B1S	POPTR_0014s14730	POPTR_0014s14730 (7:494)	NA	NA	NA	NA	AT2G43060.1	ILI1 binding bHLH 1 	LOC_Os04g56500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6696.2.S1_at	B	B1S	POPTR_0013s07240	POPTR_0013s07240 (7:292)	NA	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140340.1	N-6 Adenine-specific DNA methylase; Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.66989.1.S1_at	B	B1S	POPTR_0017s12040	POPTR_0017s12040 (7:1446)	NA	NA	Q43847	"Granule-bound starch synthase 2, chloroplastic/amyloplastic"	AT3G01180.1	starch synthase 2 	LOC_Os10g30156.1	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.66990.1.S1_at	B	B1S	POPTR_0008s03320	POPTR_0008s03320 (4:713)	NA	NA	NA	NA	AT2G36840.1	ACT-like superfamily protein 	LOC_Os09g39740.1	"ACT domain containing protein, expressed"	Medtr7g124000.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.67030.1.S1_at	B	B2S	POPTR_0018s09690	POPTR_0018s09690 (6:1622)//POPTR_0006s17890 (3:991)	scaffold_6:16133421-16135011(+) (9)	NA	O65570	Villin-4	AT4G30160.1	villin 4 	LOC_Os06g44890.1	"villin protein, putative, expressed"	Medtr2g041680.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
PtpAffx.67146.1.S1_at	B	B1S	POPTR_0009s03880	POPTR_0009s03880 (7:648)	NA	NA	Q8VZI8	"ATP-dependent zinc metalloprotease FTSH 10, mitochondrial"	AT1G07510.1	FTSH protease 10 	LOC_Os05g38400.1	"OsFtsH8  FtsH protease, homologue of AtFtsH3/10, expressed"	Medtr4g084650.1	"AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
PtpAffx.6719.4.S1_at	B	B1S	POPTR_0010s16060	POPTR_0010s16060 (0:289)	NA	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6733.5.A1_at	B	B1S	POPTR_0001s34950	POPTR_0001s34950 (7:177)	NA	NA	P16016	"Carbonic anhydrase, chloroplastic"	AT3G01500.1	carbonic anhydrase 1 	LOC_Os01g45274.1	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr6g006530.2	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.67416.1.S1_at	B	B1S	POPTR_0012s08630	POPTR_0012s08630 (6:604)	NA	NA	Q07123	Copper methylamine oxidase	AT2G42490.1	Copper amine oxidase family protein 	LOC_Os04g40040.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr3g114690.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.67424.1.S1_at	B	B1S	POPTR_0003s15250	POPTR_0003s15250 (8:482)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67429.1.S1_at	B	B1S	POPTR_0008s04930	POPTR_0008s04930 (8:539)	NA	NA	Q9FY46	"Sulfate transporter 4.1, chloroplastic"	AT5G13550.1	sulfate transporter 4.1 	LOC_Os09g06499.2	"sulfate transporter 4.1, chloroplast precursor, putative, expressed"	Medtr7g022760.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.67441.1.S1_at	B	B1S	POPTR_0001s07440	POPTR_0001s07440 (6:260)	NA	NA	P93431	"Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic"	AT1G73110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g56320.1	"AAA-type ATPase family protein, putative, expressed"	AC233655_26.1	"AAA ATPase, central region AC233655.2 167789-172100 E EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.67488.1.S1_at	B	B1S	POPTR_0001s09950	POPTR_0001s09950 (2:100)	NA	NA	NA	NA	AT1G64050.1	unknown protein; Has 524 Blast hits to 342 proteins in 101 species: Archae - 0; Bacteria - 106; Metazoa - 106; Fungi - 24; Plants - 25; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). 	LOC_Os02g16600.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67495.1.S1_at	B	B1S	POPTR_0010s11660	POPTR_0010s11660 (5:186)	NA	NA	Q8GUU2	E3 ubiquitin protein ligase RIE1	AT1G68070.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os02g45240.1	"zinc finger family protein, putative, expressed"	Medtr4g157080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67496.1.S1_at	B	B1S	POPTR_0001s17070	POPTR_0001s17070 (8:184)	NA	NA	NA	NA	AT3G13990.2	Kinase-related protein of unknown function (DUF1296) 	LOC_Os06g10430.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g077880.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.675.11.S1_at	B	B1S	POPTR_0004s04670	POPTR_0004s04670 (7:313)	NA	NA	Q05349	Auxin-repressed 12.5 kDa protein	AT1G28330.1	dormancy-associated protein-like 1 	LOC_Os11g44810.1	"auxin-repressed protein, putative, expressed"	Medtr2g017720.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67578.1.A1_at	B	B1S	POPTR_0016s00250	POPTR_0016s00250 (2:179)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g033720.1	"coiled-coil domain containing 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67583.1.A1_at	B	B2S	POPTR_0016s04610	POPTR_0016s04610 (5:903)//POPTR_0016s04710 (5:832)	NA	NA	Q6BDR8	Non-structural maintenance of chromosome element 4	AT1G51130.1	"Nse4, component of Smc5/6 DNA repair complex "	LOC_Os02g10090.1	expressed protein	Medtr1g147250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67648.1.A1_at	B	B1S	POPTR_0003s16845	POPTR_0003s16845 (7:96)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67660.1.A1_at	B	B1S	POPTR_0004s09340	POPTR_0004s09340 (0:122)	NA	NA	NA	NA	AT1G60640.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os01g32130.1	expressed protein	Medtr7g094070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67669.1.A1_at	B	B1S	POPTR_0008s18180	POPTR_0008s18180 (8:143)	NA	NA	NA	NA	AT3G26090.1	G-protein coupled receptors;GTPase activators 	NA	NA	Medtr3g102890.1	Regulator of G protein signalling 	NA	GO:0004871|signal transducer activity	NA
PtpAffx.67670.1.A1_at	B	B1S	POPTR_0002s11850	POPTR_0002s11850 (0:426)	NA	NA	NA	NA	AT1G27461.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g39700.1	expressed protein	Medtr1g023000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67681.1.A1_at	B	B3S	POPTR_0019s00870	POPTR_0019s00900 (3:1919)//POPTR_0019s00870 (4:1466)//POPTR_0019s00930 (2:1030)	NA	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os08g12740.2	"disease resistance protein RGA3, putative, expressed"	Medtr3g097280.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.67685.1.A1_at	B	B2S	POPTR_0008s01190	POPTR_0010s25380 (0:508)//POPTR_0008s01190 (2:485)	NA	NA	Q9SG77	Putative pectinesterase/pectinesterase inhibitor 24	AT3G10710.1	root hair specific 12 	LOC_Os04g38560.1	"pectinesterase, putative, expressed"	Medtr8g026630.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.67689.1.A1_at	B	B1S	POPTR_0008s09290	POPTR_0008s09290 (7:436)	NA	NA	NA	NA	AT1G13920.1	Remorin family protein 	LOC_Os10g17790.1	"remorin C-terminal domain containing protein, putative, expressed"	Medtr5g046550.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67703.1.S1_at	B	B1S	POPTR_0001s44280	POPTR_0001s44280 (0:67)	NA	NA	A2RSJ4	UHRF1-binding protein 1-like	AT3G20720.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os04g53670.1	expressed protein	Medtr4g111120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67714.1.S1_at	B	B1S	POPTR_0013s04480	POPTR_0013s04480 (7:338)	NA	NA	NA	NA	AT5G28910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 82 Blast hits to 80 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os02g56500.1	expressed protein	Medtr1g093750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67727.1.A1_at	B	B1S	POPTR_0007s09900	POPTR_0007s09900 (7:232)	NA	NA	Q9UUA2	"DNA repair and recombination protein pif1, mitochondrial"	NA	NA	LOC_Os10g32030.1	"retrotransposon protein, putative, unclassified"	Medtr8g074770.1	"Protein of unknown function DUF889, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67763.1.S1_at	B	B1S	POPTR_0004s21910	POPTR_0004s21910 (6:268)	NA	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os02g48210.1	"lectin-like protein kinase, putative, expressed"	Medtr5g084970.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.67810.1.A1_at	B	B1S	POPTR_0016s12440	POPTR_0016s12440 (8:309)	NA	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235756_21.1	2OG-Fe(II) oxygenase AC235756.1 149509-155143 H EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.6791.2.S1_at	B	B1S	POPTR_0001s42760	POPTR_0001s42760 (4:154)	NA	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67954.1.A1_at	B	B1S	POPTR_0004s18390	POPTR_0004s18390 (7:642)	NA	NA	P80093	"Phytoene dehydrogenase, chloroplastic/chromoplastic"	AT4G14210.1	phytoene desaturase 3 	LOC_Os04g47290.2	"amine oxidase, putative, expressed"	Medtr1g096350.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.68219.1.S1_at	B	B1S	POPTR_0001s32530	POPTR_0001s32530 (7:1868)	NA	NA	NA	NA	AT3G23910.1	BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink). 	LOC_Os04g31050.1	expressed protein	Medtr3g105300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6826.2.S1_at	B	B1S	POPTR_0019s04650	POPTR_0019s04650 (8:2202)	NA	NA	P52914	Nucleoside-triphosphatase	AT5G18280.1	apyrase 2 	LOC_Os07g48430.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.68278.1.S1_at	B	B1S	POPTR_0001s11210	POPTR_0001s11210 (1:93)	NA	NA	Q944Q0	Serine/threonine-protein kinase WNK8	AT5G41990.1	with no lysine (K) kinase 8 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr3g109240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.685.1.S1_at	B	B1S	POPTR_0012s06900	POPTR_0012s06900 (4:543)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6862.1.S1_at	B	B1S	POPTR_0017s02830	POPTR_0017s02830 (4:539)	NA	NA	Q6NZW8	ADP-ribosylation factor-like protein 8B-A	AT5G37680.1	ADP-ribosylation factor-like A1A 	LOC_Os02g49980.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g085850.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.68679.2.S1_at	B	B1S	POPTR_0007s14460	POPTR_0007s14460 (5:980)	NA	NA	Q6MAS9	Glycogen synthase	AT5G65685.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g56320.1	"glycogen synthase 1, putative, expressed"	Medtr5g032130.1	Starch synthase catalytic region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.68729.1.S1_at	B	B1S	POPTR_0008s10570	POPTR_0008s10570 (8:870)	NA	NA	NA	NA	AT3G06660.1	PAPA-1-like family protein / zinc finger (HIT type) family protein 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6885.1.S1_at	B	B1S	POPTR_0001s16180	POPTR_0001s16180 (8:1270)	NA	NA	Q9SSB5	26S protease regulatory subunit 7 homolog A	AT1G53750.1	regulatory particle triple-A 1A 	LOC_Os06g09290.1	"26S protease regulatory subunit 7, putative, expressed"	Medtr1g121600.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.68891.1.A1_at	B	B1S	POPTR_0014s00900	POPTR_0014s00900 (1:547)	NA	NA	Q9VCY8	ADIPOR-like receptor CG5315	AT4G37680.2	heptahelical protein 4 	LOC_Os03g13040.1	"haemolysin-III, putative, expressed"	Medtr5g015420.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
PtpAffx.6890.2.S1_at	B	B1S	POPTR_0001s14260	POPTR_0001s14260 (7:550)	NA	NA	Q40648	Probable voltage-gated potassium channel subunit beta	AT1G04690.1	potassium channel beta subunit 1 	LOC_Os02g57240.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g140860.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.68984.1.A1_at	B	B1S	POPTR_0001s27590	POPTR_0001s27590 (7:296)	scaffold_1:26471810-26472294(+) (11)	NA	NA	NA	AT5G05800.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g10550.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g093090.1	"PIF-like orf1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69006.1.A1_at	B	B1S	POPTR_0001s32790	POPTR_0001s32790 (4:263)	NA	NA	NA	NA	AT3G23805.1	ralf-like 24 	LOC_Os01g15320.1	"RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed"	Medtr3g104800.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69012.1.S1_at	B	B1S	POPTR_0001s35520	POPTR_0001s35520 (6:480)	NA	NA	B0F9L4	Golgin candidate 6	AT3G27530.1	golgin candidate 6 	LOC_Os12g35360.1	"vesicle tethering family protein, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0016020|membrane
PtpAffx.69052.1.A1_at	B	B1S	POPTR_0019s04450	POPTR_0019s04450 (4:76)	scaffold_68:24215-24297(+) (11)	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69156.1.A1_at	B	B1A	POPTR_0006s13840	POPTR_0006s13840 (5:233)	scaffold_6:11027189-11028519(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69199.1.A1_at	B	B1S	POPTR_0019s02600	POPTR_0019s02600 (8:549)	NA	NA	Q6BQ20	Autophagy-related protein 13	AT3G18770.1	Autophagy-related protein 13 	LOC_Os11g06320.1	expressed protein	Medtr3g144100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.15.A1_a_at	B	B1S	POPTR_0007s12770	POPTR_0007s12770 (4:100)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.21.S1_a_at	B	B1S	POPTR_0007s12770	POPTR_0007s12770 (0:103)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.692.32.A1_at	B	B1S	POPTR_0005s12510	POPTR_0005s12510 (1:428)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69222.1.A1_at	B	B1A	POPTR_0017s05790	POPTR_0017s05790 (6:207)	scaffold_17:4520746-4521043(-) (10)	NA	A7SXZ6	Probable O-sialoglycoprotein endopeptidase	AT4G22720.2	Actin-like ATPase superfamily protein 	LOC_Os05g10630.1	"O-sialoglycoprotein endopeptidase, putative, expressed"	Medtr4g025830.1	"Peptidase M22, glycoprotease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.69287.1.A1_at	B	B1S	POPTR_0013s07710	POPTR_0013s07710 (2:317)	NA	NA	Q5U2W5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.69294.1.A1_at	B	B1S	POPTR_0019s12480	POPTR_0019s12480 (7:672)	scaffold_19:13523191-13524051(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69294.2.S1_s_at	B	B2S	POPTR_0019s13190	POPTR_0575s00200 (5:554)//POPTR_0019s13190 (5:553)	scaffold_19:14151514-14152275(+) (11)//scaffold_575:3360-4122(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69305.1.A1_at	B	B1S	POPTR_0017s07210	POPTR_0017s07210 (8:1037)	NA	NA	NA	NA	AT5G64360.4	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g31940.1	"dnaJ domain containing protein, expressed"	Medtr4g121050.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.69339.1.A1_at	B	B1S	POPTR_0006s05100	POPTR_0006s05100 (8:221)	NA	NA	NA	NA	AT3G57500.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g129070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69346.1.A1_at	B	B1S	POPTR_0005s20110	POPTR_0005s20110 (7:370)	scaffold_5:19151476-19152000(+) (11)	NA	Q8VYX0	IAA-amino acid hydrolase ILR1-like 6	AT1G44350.1	IAA-leucine resistant (ILR)-like gene 6 	LOC_Os06g47620.1	"peptidase, putative, expressed"	Medtr3g100500.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.69352.1.A1_at	B	B1S	POPTR_0002s16490	POPTR_0002s16490 (8:451)	NA	NA	NA	NA	AT1G01500.1	Erythronate-4-phosphate dehydrogenase family protein 	LOC_Os03g56420.1	expressed protein	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69368.1.A1_at	B	B1S	POPTR_0007s08410	POPTR_0007s08410 (6:510)	NA	NA	P25586	Ribosomal RNA assembly protein KRR1	AT5G08420.1	RNA-binding KH domain-containing protein 	LOC_Os10g31520.1	"ribosomal RNA assembly protein mis3, putative, expressed"	Medtr5g094630.2	"KH, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69389.1.A1_at	B	B1S	POPTR_0016s07330	POPTR_0016s07330 (0:20)	scaffold_16:5202155-5202252(+) (11)	NA	NA	NA	AT5G06280.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	AC146630_3.1	hypothetical protein AC146630.25 11101-11562 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6940.1.S1_a_at	B	B1S	POPTR_0019s05830	POPTR_0019s05830 (8:623)	NA	NA	Q9SK86	Alcohol dehydrogenase-like 1	AT1G22430.2	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os07g42924.1	"dehydrogenase, putative, expressed"	Medtr5g048350.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.69405.1.A1_at	B	B1A	POPTR_0002s26260	POPTR_0002s26260 (6:219)	scaffold_2:23241810-23242172(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g20930.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69469.1.A1_at	B	B1S	POPTR_0013s07430	POPTR_0013s07430 (6:490)	NA	NA	NA	NA	AT4G27620.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27610.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g37130.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69503.1.A1_at	B	B1S	POPTR_0008s16940	POPTR_0008s16940 (8:193)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69512.1.A1_at	B	B1S	POPTR_0009s04100	POPTR_0009s04100 (3:170)	NA	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT3G53810.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44900.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.69517.1.A1_at	B	B1A	POPTR_0005s15970	POPTR_0005s15970 (5:258)	scaffold_5:12630840-12631318(+) (11)	NA	Q9UTS8	UPF0695 membrane protein C977.11/PB8B6.06c	AT2G41705.2	camphor resistance CrcB family protein 	LOC_Os10g41749.5	"crcB-like protein, expressed"	Medtr3g097920.1	Camphor resistance CrcB protein 	NA	NA	GO:0016020|membrane
PtpAffx.69523.2.A1_at	B	B1S	POPTR_0001s26260	POPTR_0001s26260 (8:89)	NA	NA	B5DGI7	RNA-binding protein 8A	AT1G51510.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os05g04850.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g008930.1	"RNA-binding protein 8A, putative "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.69545.1.A1_at	B	B1S	POPTR_0007s10660	POPTR_0007s10660 (7:144)	scaffold_7:10678619-10679185(-) (11)	NA	NA	NA	AT5G67230.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g47340.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr5g016530.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
PtpAffx.6955.3.A1_at	B	B1S	POPTR_0006s06390	POPTR_0006s06390 (8:621)	NA	NA	Q9LHS0	Putative clathrin assembly protein At5g35200	AT5G35200.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os06g07830.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr8g121480.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.69611.1.A1_at	B	B1S	POPTR_0007s01660	POPTR_0007s01660 (0:425)	NA	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.69616.1.A1_at	B	B1S	POPTR_0011s04280	POPTR_0011s04280 (4:129)	scaffold_11:4286037-4286208(-) (11)	NA	Q5XII5	Telomerase Cajal body protein 1	AT4G21520.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52794.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g125120.1	"Cytochrome cd1-nitrite reductase-like, C-terminal haem d1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69627.1.A1_s_at	B	B1S	POPTR_0005s22940	POPTR_0005s22940 (0:4)	scaffold_5:21809826-21810341(+) (11)	NA	Q9VU02	Probable small nuclear ribonucleoprotein Sm D1	AT4G02840.1	Small nuclear ribonucleoprotein family protein 	LOC_Os04g39444.1	"LSM domain containing protein, expressed"	Medtr1g086500.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69709.1.A1_at	B	B1S	POPTR_0009s10730	POPTR_0009s10730 (1:451)	NA	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT2G03550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g37060.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129340.1	"CXE carboxylesterase, putative "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.69766.1.A1_at	B	B1S	POPTR_0013s12220	POPTR_0013s12220 (1:444)	NA	NA	Q681Q7	Uncharacterized protein At1g03900	AT3G58600.1	Adaptin ear-binding coat-associated protein 1 NECAP-1 	LOC_Os01g42830.1	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
PtpAffx.69786.1.S1_at	B	B1S	POPTR_0006s05110	POPTR_0006s05110 (4:137)	scaffold_6:3542819-3546073(-) (9)	NA	Q941L0	Cellulose synthase A catalytic subunit 3 [UDP-forming]	AT5G05170.1	Cellulose synthase family protein 	LOC_Os07g10770.1	"CESA8 - cellulose synthase, expressed"	Medtr3g029130.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.69797.3.A1_at	B	B1S	POPTR_0018s13840	POPTR_0018s13840 (8:510)	NA	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23550.1	"basic helix-loop-helix family protein, putative, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.69818.1.A1_at	B	B1S	POPTR_0012s01360	POPTR_0012s01360 (7:171)	NA	NA	NA	NA	AT5G41761.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g33200.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69821.1.A1_at	B	B8S	POPTR_0001s32700	POPTR_0002s05305 (0:2431)//POPTR_0001s21560 (0:2399)//POPTR_0014s17470 (0:2389)//POPTR_0002s19310 (0:2282)//POPTR_0001s32700 (1:2249)//POPTR_0005s20440 (0:2175)//POPTR_0006s11990 (0:2066)//POPTR_0003s05090 (0:2056)	scaffold_6:9153569-9156398(+) (9)	NA	Q5SVZ6	Zinc finger MYM-type protein 1	AT1G19260.1	TTF-type zinc finger protein with HAT dimerisation domain 	LOC_Os01g08610.1	"hAT dimerisation domain-containing protein, putative"	Medtr5g078390.1	"Zinc finger, TTF-type; HAT dimerisation "	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.69823.1.A1_at	B	B1S	POPTR_0013s09440	POPTR_0013s09440 (2:458)	NA	NA	Q55GS2	Probable inactive serine/threonine-protein kinase scy1	AT2G40730.1	Protein kinase family protein with ARM repeat domain 	LOC_Os01g60440.1	"HEAT repeat family protein, putative, expressed"	AC235754_13.1	Armadillo-like helical AC235754.1 40000-47052 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69877.2.A1_at	B	B1S	POPTR_0010s10110	POPTR_0010s10110 (7:539)	scaffold_10:10683169-10683793(+) (10)	NA	NA	NA	AT3G05980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19340.1); Has 202 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 148; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	NA	NA	Medtr1g132810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.69905.1.A1_at	B	B1S	POPTR_0014s17250	POPTR_0014s17250 (5:1092)	scaffold_14:13389217-13390484(-) (9)	NA	Q5KLN2	GPN-loop GTPase 3 homolog CNB04680/CNBB1090	AT4G12790.5	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g50620.1	"ATP binding protein, putative, expressed"	Medtr3g110350.1	"Protein of unknown function, ATP binding "	NA	GO:0000166|nucleotide binding	NA
PtpAffx.70015.1.A1_at	B	B1S	POPTR_0003s16370	POPTR_0003s16370 (6:397)	scaffold_3:15948266-15951385(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70024.1.A1_at	B	B1S	POPTR_0001s38560	POPTR_0001s38560 (1:167)	NA	NA	Q9ZP06	"Malate dehydrogenase 1, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.7005.1.S1_at	B	B1A	POPTR_0017s01060	POPTR_0017s01060 (4:420)	NA	NA	Q12296	Protein MAM3	AT5G52790.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os03g03430.1	"CBS domain containing protein, expressed"	Medtr4g122040.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7006.1.S1_at	B	B1S	POPTR_0015s05790	POPTR_0015s05790 (8:356)	NA	NA	O22224	Uncharacterized protein At2g41620	AT2G41620.1	Nucleoporin interacting component (Nup93/Nic96-like) family protein 	LOC_Os03g22690.1	"nucleoporin interacting component, putative, expressed"	Medtr2g125990.1	Nucleoporin interacting component 	GO:0006810|transport	NA	GO:0005643|nuclear pore
PtpAffx.70071.2.A1_at	B	B1S	POPTR_0012s07600	POPTR_0012s07600 (7:2330)	NA	NA	NA	NA	NA	NA	LOC_Os03g60950.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70082.1.A1_at	B	B1S	POPTR_0011s01430	POPTR_0011s01430 (1:41)	scaffold_11:1007707-1007912(-) (11)	NA	Q7LBC6	Lysine-specific demethylase 3B	AT1G11950.1	Transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os02g01940.1	"transcription factor jumonji, putative"	Medtr8g147200.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70091.1.A1_at	B	B1S	POPTR_0010s15830	POPTR_0010s15830 (3:63)	NA	NA	NA	NA	AT1G47970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 93717 Blast hits to 40765 proteins in 1891 species: Archae - 1046; Bacteria - 16276; Metazoa - 26677; Fungi - 16127; Plants - 6028; Viruses - 1519; Other Eukaryotes - 26044 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70091.2.A1_at	B	B1S	POPTR_0010s15830	POPTR_0010s15830 (1:335)	NA	NA	NA	NA	AT1G47970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 93717 Blast hits to 40765 proteins in 1891 species: Archae - 1046; Bacteria - 16276; Metazoa - 26677; Fungi - 16127; Plants - 6028; Viruses - 1519; Other Eukaryotes - 26044 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70116.1.A1_at	B	B1S	POPTR_0019s07750	POPTR_0019s07750 (5:98)	scaffold_19:8877012-8877230(+) (11)	NA	NA	NA	AT3G02970.1	EXORDIUM like 6 	NA	NA	Medtr5g073660.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70120.1.A1_at	B	B1S	POPTR_0010s25370	POPTR_0010s25370 (0:22)	scaffold_10:21076403-21076894(-) (11)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20780.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.7019.1.A1_s_at	B	B1S	POPTR_0010s08730	POPTR_0010s08730 (4:836)	scaffold_10:9600311-9601398(+) (10)	NA	NA	NA	AT5G43630.1	zinc knuckle (CCHC-type) family protein 	LOC_Os01g56780.3	"plus-3 domain containing protein, expressed"	Medtr5g007190.1	"Zinc finger, CCHC-type; Plus-3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70210.2.S1_at	B	B1S	POPTR_0015s12990	POPTR_0015s12990 (5:571)	NA	NA	Q8R116	Protein notum homolog	AT5G23870.3	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr1g127000.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70374.1.S1_at	B	B2S	POPTR_0009s12020	POPTR_0009s12020 (5:977)//POPTR_0009s12010 (3:43)	scaffold_9:9895609-9896750(-) (10)	NA	NA	NA	AT2G21620.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g47650.1	"universal stress protein domain containing protein, putative, expressed"	Medtr3g162380.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.7042.1.S1_at	B	B1S	POPTR_0010s08360	POPTR_0010s08360 (5:61)	NA	NA	Q8L467	Transcription factor bHLH104	AT4G14410.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02480.3	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr1g042530.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.70435.1.S1_at	B	B1S	POPTR_0017s01490	POPTR_0017s01490 (8:1244)	NA	NA	Q54ZW0	Putative phagocytic receptor 1b	AT2G01970.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.7050.1.S1_a_at	B	B1S	POPTR_0001s24840	POPTR_0001s24840 (8:31)	NA	NA	Q6R0E3	Telomere repeat-binding protein 5	AT1G07540.1	TRF-like 2 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr2g116750.1	Ubiquitin; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70613.1.S1_at	B	B1S	POPTR_0008s02130	POPTR_0008s02130 (6:1316)	NA	NA	Q8LBM4	"Iron-sulfur assembly protein IscA-like 1, mitochondrial"	AT2G16710.1	Iron-sulphur cluster biosynthesis family protein 	LOC_Os12g30030.1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"	Medtr4g141040.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70650.1.S1_at	B	B1S	POPTR_0004s01660	POPTR_0004s01660 (3:96)	NA	NA	Q9ZS97	"UPF0051 protein ABCI8, chloroplastic"	AT4G04770.1	ATP binding cassette protein 1 	LOC_Os01g61400.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr7g029700.1	FeS assembly protein SufB 	GO:0016226|iron-sulfur cluster assembly	GO:0005515|protein binding	NA
PtpAffx.70734.1.S1_at	B	B1S	POPTR_0014s14260	POPTR_0014s14260 (1:102)	scaffold_14:10431071-10431502(-) (11)	NA	NA	NA	AT2G31410.1	unknown protein; Has 1719 Blast hits to 1091 proteins in 184 species: Archae - 5; Bacteria - 24; Metazoa - 559; Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes - 769 (source: NCBI BLink). 	LOC_Os02g38190.1	expressed protein	Medtr7g096940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70808.1.S1_at	B	B1S	POPTR_0019s10140	POPTR_0019s10140 (3:367)	NA	NA	NA	NA	AT4G10070.1	KH domain-containing protein 	NA	NA	Medtr5g008480.1	"KH, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70851.1.A1_at	B	B2S	POPTR_0008s13860	POPTR_0008s13860 (6:778)//POPTR_0008s13880 (5:224)	scaffold_8:9145412-9145957(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70870.1.S1_at	B	B1S	POPTR_0014s13500	POPTR_0014s13500 (4:192)	scaffold_14:9941858-9942316(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.70992.1.S1_a_at	B	B2S	POPTR_0011s10950	POPTR_0011s10940 (5:452)//POPTR_0011s10950 (7:422)	scaffold_11:13598904-13603247(+) (9)//scaffold_11:13628378-13628916(+) (11)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.71024.1.S1_at	B	B1S	POPTR_0009s01140	POPTR_0009s01140 (5:183)	NA	NA	Q42572	DNA ligase 1	AT1G08130.1	DNA ligase 1 	LOC_Os10g34750.2	"LIG1 - Putative DNA ligase I, expressed"	Medtr7g094090.1	"ATP-dependent DNA ligase; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003910|DNA ligase (ATP) activity||GO:0005524|ATP binding	NA
PtpAffx.71036.1.S1_at	B	B1S	POPTR_0002s06000	POPTR_0002s06000 (8:899)	NA	NA	Q8VWJ2	Probable WRKY transcription factor 28	AT4G18170.1	WRKY DNA-binding protein 28 	LOC_Os01g43650.2	"OsWRKY11 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g098600.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.71064.1.S1_at	B	B1S	POPTR_0022s00830	POPTR_0022s00830 (8:526)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71160.1.S1_at	B	B1S	POPTR_0006s24920	POPTR_0006s24920 (7:712)	NA	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os05g46395.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71184.2.A1_at	B	B1S	POPTR_0010s18470	POPTR_0010s18470 (4:600)	NA	NA	Q9Z160	Conserved oligomeric Golgi complex subunit 1	AT5G16300.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os01g56910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71191.1.S1_at	B	B1S	POPTR_0008s17590	POPTR_0008s17590 (8:455)	NA	NA	Q9CAG8	F-box/kelch-repeat protein At1g67480	AT1G67480.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g30210.2	"OsFBK7 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71226.1.S1_at	B	B1S	POPTR_0010s09820	POPTR_0010s09820 (5:2363)	NA	NA	Q8LC83	40S ribosomal protein S24-2	AT5G28060.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.71423.1.A1_at	B	B1S	POPTR_0007s05580	POPTR_0007s05580 (7:527)	NA	NA	NA	NA	AT5G10190.1	Major facilitator superfamily protein 	LOC_Os08g31670.1	"transporter, putative, expressed"	Medtr5g072270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71453.1.S1_at	B	B2S	POPTR_0013s05120	POPTR_0013s05120 (2:373)//POPTR_0013s05130 (0:0)	NA	NA	Q96LT9	RNA-binding protein 40	AT1G09230.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g21020.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g100170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.7148.4.A1_at	B	B1A	POPTR_0017s14530	POPTR_0017s14530 (8:3958)	NA	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71504.1.S1_at	B	B1S	POPTR_0014s10100	POPTR_0014s10100 (7:568)	NA	NA	NA	NA	AT3G14430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g41680.1	expressed protein	Medtr3g086130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71504.2.S1_at	B	B1S	POPTR_0014s10100	POPTR_0014s10100 (2:1716)	NA	NA	NA	NA	AT3G14430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g41680.1	expressed protein	Medtr3g086130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71514.1.A1_at	B	B1S	POPTR_0018s07290	POPTR_0018s07290 (3:335)	NA	NA	Q9URW6	SH3 domain-containing protein PJ696.02	AT3G43230.1	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os07g17130.1	"FYVE zinc finger domain containing protein, expressed"	Medtr8g133230.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71529.1.A1_at	B	B1S	POPTR_0001s02080	POPTR_0001s02080 (5:241)	NA	NA	NA	NA	AT2G35470.1	unknown protein; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g029520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71540.1.A1_at	B	B1S	POPTR_0007s04840	POPTR_0007s04840 (4:263)	NA	NA	P43273	Transcription factor TGA2	AT3G14880.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g06560.1	"transcription factor HBP-1b, putative, expressed"	Medtr4g143910.1	"tumor-related protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7156.1.A1_at	B	B1S	POPTR_0018s13210	POPTR_0018s13210 (0:35)	NA	NA	Q84TI7	Sodium transporter HKT1	AT4G10310.1	high-affinity K+ transporter 1 	LOC_Os02g07830.1	"OsHKT1;3 - Na+ transporter, expressed"	Medtr6g092400.1	Cation transporter 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	NA
PtpAffx.71566.1.A1_at	B	B1S	POPTR_0004s22320	POPTR_0004s22320 (1:361)	NA	NA	Q9SJJ3	BEL1-like homeodomain protein 8	AT2G27990.1	BEL1-like homeodomain 8 	LOC_Os03g52239.1	"homeobox domain containing protein, expressed"	fpc265_20.1	POX; Homeodomain-related fpc265 87448-90403 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.71659.1.S1_at	B	B1S	POPTR_0008s03020	POPTR_0008s03020 (8:375)	scaffold_8:1593790-1594285(+) (10)	NA	NA	NA	AT3G52790.1	peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g02685.1	"lysM domain containing protein, putative, expressed"	Medtr7g127020.1	Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.71681.1.A1_at	B	B1S	POPTR_0018s12700	POPTR_0018s12700 (5:528)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7169.2.S1_at	B	B1S	POPTR_0001s13110	POPTR_0001s13110 (2:356)	NA	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os11g32110.4	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.7170.1.A1_at	B	B1S	POPTR_0016s04500	POPTR_0016s04500 (4:532)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7171.2.A1_at	B	B1S	POPTR_0009s11340	POPTR_0009s11340 (4:526)	NA	NA	P0CB17	UPF0497 membrane protein At3g50810	AT3G50810.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g55870.1	"membrane associated DUF588 domain containing protein, putative, expressed"	AC157372_7.1	Protein of unknown function DUF588 AC157372.2 49878-51765 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7182.2.S1_at	B	B1S	POPTR_0010s18190	POPTR_0010s18190 (4:210)	scaffold_10:16537957-16538537(+) (11)	NA	NA	NA	AT1G79390.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g29320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71827.1.A1_at	B	B1S	POPTR_0017s12060	POPTR_0017s12060 (6:255)	scaffold_17:12192370-12192801(-) (11)	NA	Q6PH85	DCN1-like protein 2	AT3G28970.1	Domain of unknown function (DUF298) 	LOC_Os07g43720.1	"DCN1, putative, expressed"	Medtr7g010140.1	Protein of unknown function DUF298 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7190.1.A1_at	B	B1S	POPTR_0005s09300	POPTR_0005s09300 (8:31)	NA	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT3G19910.1	RING/U-box superfamily protein 	LOC_Os08g43480.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr1g143530.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7195.1.S1_at	B	B1S	POPTR_0005s01740	POPTR_0005s01740 (8:480)	NA	NA	NA	NA	AT1G56423.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g19400.1	expressed protein	Medtr1g100580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.71952.1.S1_at	B	B1S	POPTR_0001s16770	POPTR_0001s16770 (0:275)	NA	NA	NA	NA	AT1G54120.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g025160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7198.1.S1_at	B	B1S	POPTR_0003s13690	POPTR_0003s13690 (7:418)	NA	NA	Q9T014	Protein SPA1-RELATED 2	AT4G11110.1	SPA1-related 2 	LOC_Os05g49590.2	"suppressor of phythchrome A, putative, expressed"	Medtr5g009560.1	Protein kinase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72029.1.A1_at	B	B1S	POPTR_0012s14670	POPTR_0012s14670 (8:628)	NA	NA	Q8VXX5	Monocopper oxidase-like protein SKS1	AT4G25240.1	SKU5 similar 1 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr3g010000.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.7208.1.A1_at	B	B1S	POPTR_0006s11550	POPTR_0006s11550 (7:439)	NA	NA	NA	NA	AT1G19490.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os12g06010.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr7g126980.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.7211.1.S1_at	B	B1A	POPTR_0004s08620	POPTR_0004s08620 (8:409)	scaffold_4:7165024-7165451(+) (9)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41310.1	"disease resistance protein RGA2, putative, expressed"	Medtr6g062690.1	NB-ARC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72123.1.S1_s_at	B	B1S	POPTR_0010s09750	POPTR_0010s09750 (1:47)	scaffold_10:10411508-10412065(-) (11)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os03g06340.1	"XS domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72127.1.A1_at	B	B1S	POPTR_0018s13000	POPTR_0018s13000 (8:1379)	NA	NA	NA	NA	AT5G20200.1	nucleoporin-related 	LOC_Os06g40460.1	expressed protein	Medtr1g059650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7220.1.S1_at	B	B1S	POPTR_0017s04410	POPTR_0017s04410 (6:306)	scaffold_17:3400724-3401444(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72203.1.S1_at	B	B1S	POPTR_0001s28270	POPTR_0001s28270 (5:559)	NA	NA	NA	NA	AT5G19430.1	RING/U-box superfamily protein 	LOC_Os01g72480.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72203.2.S1_at	B	B1S	POPTR_0009s07490	POPTR_0009s07490 (0:824)	NA	NA	NA	NA	AT5G12310.1	RING/U-box superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72203.3.S1_at	B	B1S	POPTR_0001s28270	POPTR_0001s28270 (7:175)	NA	NA	NA	NA	AT5G19430.1	RING/U-box superfamily protein 	LOC_Os01g72480.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7221.1.A1_at	B	B1S	POPTR_0010s14690	POPTR_0010s14690 (8:642)	NA	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT1G71691.2	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os08g02094.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g022220.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.7222.1.S1_at	B	B1S	POPTR_0005s04460	POPTR_0005s04460 (0:186)	NA	NA	P37707	B2 protein	AT2G32910.1	DCD (Development and Cell Death) domain protein 	LOC_Os02g51140.1	"N-rich protein, putative, expressed"	Medtr3g151330.1	Kelch related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72236.1.S1_at	B	B1S	POPTR_0004s11520	POPTR_0004s11520 (2:359)	NA	NA	Q5VWG9	Transcription initiation factor TFIID subunit 3	AT5G15570.1	Bromodomain transcription factor 	LOC_Os12g38620.3	"bromodomain associated family protein, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7225.1.S1_at	B	B1S	POPTR_0019s10930	POPTR_0019s10930 (0:118)	NA	NA	Q91WF7	Polyphosphoinositide phosphatase	AT1G22620.1	Phosphoinositide phosphatase family protein 	LOC_Os08g01750.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7228.1.A1_at	B	B1S	POPTR_0005s10240	POPTR_0005s10240 (7:449)	scaffold_365:7810-8208(-) (9)//scaffold_5:7334051-7334719(+) (11)	NA	Q5ZIF1	Adipocyte plasma membrane-associated protein	AT3G51420.1	strictosidine synthase-like 4 	LOC_Os10g39710.1	"strictosidine synthase, putative, expressed"	Medtr8g088510.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.72282.1.S1_at	B	B1S	POPTR_0001s05980	POPTR_0001s05980 (7:348)	NA	NA	NA	NA	AT4G31560.1	high chlorophyll fluorescence 153 	NA	NA	Medtr3g026180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72308.1.S1_at	B	B1S	POPTR_0010s18260	POPTR_0010s18260 (4:405)	NA	NA	P13853	17.6 kDa class I heat shock protein 3	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr2g085560.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7233.1.S1_at	B	B1A	POPTR_0015s05360	POPTR_0015s05360 (8:569)	NA	NA	NA	NA	AT1G48450.1	Protein of unknown function (DUF760) 	LOC_Os03g50870.1	expressed protein	Medtr4g154570.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7236.1.S1_at	B	B2S	POPTR_0004s02800	POPTR_0004s02820 (5:303)//POPTR_0004s02800 (5:302)	NA	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr4g124560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.7240.1.A1_at	B	B1S	POPTR_0001s24160	POPTR_0001s24160 (8:88)	NA	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G59750.1	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II 	LOC_Os05g38570.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr2g114380.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
PtpAffx.72427.1.S1_at	B	B1S	POPTR_0004s24410	POPTR_0004s24410 (8:495)	NA	NA	A7SBF0	Integrator complex subunit 9 homolog	AT3G07530.1	CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). 	LOC_Os03g13960.2	expressed protein	Medtr3g020530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7247.1.A1_at	B	B1S	POPTR_0019s08710	POPTR_0019s08710 (7:767)	NA	NA	Q7XJN0	DEAD-box ATP-dependent RNA helicase 17	AT2G40700.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g01990.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr4g081670.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.72485.1.S1_at	B	B1S	POPTR_0015s00960	POPTR_0015s00960 (4:47)	scaffold_15:558501-558595(+) (11)	NA	Q84WW2	"Probable 6-phosphogluconolactonase 5, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7251.2.S1_at	B	B1S	POPTR_0017s07850	POPTR_0017s07850 (6:221)	NA	NA	O14327	Polyadenylate-binding protein 2	AT5G65260.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g120660.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.72637.1.A1_at	B	B1S	POPTR_0002s09530	POPTR_0002s09530 (0:1055)	NA	NA	NA	NA	AT1G78110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). 	LOC_Os02g51720.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7264.1.A1_at	B	B1S	POPTR_0012s00610	POPTR_0012s00610 (6:321)	NA	NA	NA	NA	AT5G53730.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os12g06260.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr3g122630.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.7266.1.S1_a_at	B	B1S	POPTR_0012s14210	POPTR_0012s14210 (4:1435)	scaffold_12:14181543-14183254(-) (11)	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7266.2.S1_at	B	B1S	POPTR_0012s14210	POPTR_0012s14210 (5:180)	scaffold_12:14181506-14181999(-) (11)	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72667.1.S1_at	B	B1S	POPTR_0001s21980	POPTR_0001s21980 (8:472)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7270.1.S1_at	B	B1S	POPTR_0014s12090	POPTR_0014s12090 (4:78)	scaffold_14:8943720-8943840(-) (9)	NA	P42736	Ethylene-responsive transcription factor RAP2-3	AT3G16770.1	ethylene-responsive element binding protein 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr1g107940.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.7275.1.S1_at	B	B2S	POPTR_0006s02310	POPTR_0006s02310 (6:258)//POPTR_0006s02370 (3:213)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72820.1.S1_at	B	B1S	POPTR_0011s09450	POPTR_0011s09450 (8:217)	NA	NA	Q6H6V4	Auxin response factor 6	AT1G30330.1	auxin response factor 6 	LOC_Os02g06910.1	"auxin response factor 6, putative, expressed"	Medtr2g022250.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.72880.1.A1_at	B	B1S	POPTR_0001s10320	POPTR_0001s10320 (8:569)	NA	NA	Q9R0M8	UDP-galactose translocator	AT5G41760.2	Nucleotide-sugar transporter family protein 	LOC_Os06g33210.1	"UAA transporter family domain containing protein, expressed"	Medtr7g143690.1	UDP-galactose transporter; Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
PtpAffx.72887.1.A1_s_at	B	B1S	POPTR_0571s00210	POPTR_0571s00210 (7:102)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g126590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.72920.1.S1_at	B	B1S	POPTR_0008s05850	POPTR_0008s05850 (8:1210)	NA	NA	Q9ZW07	Pumilio homolog 1	AT2G29200.1	pumilio 1 	LOC_Os01g62650.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr5g087730.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.7294.1.A1_at	B	B1S	POPTR_0010s22140	POPTR_0010s22140 (3:69)	NA	NA	NA	NA	AT3G55060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink). 	LOC_Os07g48700.1	expressed protein	Medtr1g146390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73.1.S1_at	B	B1S	POPTR_0001s01520	POPTR_0001s01520 (7:480)	NA	NA	Q9ZQ95	Flavonol-3-O-glycoside-7-O-glucosyltransferase 1	AT2G15490.1	UDP-glycosyltransferase 73B4 	LOC_Os01g08100.1	"flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed"	Medtr5g027420.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73031.1.S1_at	B	B1S	POPTR_0001s41090	POPTR_0001s41090 (8:3226)	NA	NA	Q9LUQ5	Probable ubiquitin-conjugating enzyme E2 25	AT3G15355.1	ubiquitin-conjugating enzyme 25 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.7309.1.A1_at	B	B1S	POPTR_0013s12830	POPTR_0013s12830 (0:15)	NA	NA	Q6TKS7	Interferon-induced GTP-binding protein Mx	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.731.2.A1_at	B	B1S	POPTR_0004s06880	POPTR_0004s06880 (1:434)	NA	NA	Q96HI0	Sentrin-specific protease 5	AT4G15880.1	Cysteine proteinases superfamily protein 	LOC_Os03g22400.1	"ulp1 protease family protein, putative, expressed"	Medtr8g138660.1	"Intermediate filament protein; Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.7321.2.A1_at	B	B1S	POPTR_0014s13980	POPTR_0014s13980 (5:307)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73344.1.S1_at	B	B1S	POPTR_0018s11740	POPTR_0018s11740 (7:1346)	scaffold_18:12388122-12390419(+) (9)	NA	Q6ZCX3	Formin-like protein 6	AT5G58160.1	actin binding 	LOC_Os08g17820.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g145580.1	"Actin-binding FH2; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73400.1.S1_at	B	B1A	POPTR_0016s13250	POPTR_0016s13250 (6:301)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22370.2	UDP-glucosyl transferase 85A5 	LOC_Os02g51930.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073190.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7350.1.S1_at	B	B1S	POPTR_0004s03530	POPTR_0004s03530 (8:407)	NA	NA	Q0D5G4	B3 domain-containing protein Os07g0563300	AT4G32010.1	HSI2-like 1 	LOC_Os07g37610.1	"B3 DNA binding domain containing protein, putative, expressed"	Medtr2g014020.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.7352.1.S1_at	B	B1S	POPTR_0006s03230	POPTR_0006s03230 (5:1682)	NA	NA	O22207	Ubiquitin carboxyl-terminal hydrolase 5	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.7356.1.A1_at	B	B1S	POPTR_0002s24220	POPTR_0002s24220 (7:205)	NA	NA	Q54KS4	Guanine nucleotide-binding protein-like 3 homolog	AT3G07050.1	GTP-binding family protein 	LOC_Os01g27730.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.73624.1.S1_at	B	B1S	POPTR_0003s21440	POPTR_0003s21440 (8:539)	NA	NA	NA	NA	AT1G55230.1	Family of unknown function (DUF716)  	LOC_Os09g27260.1	"plant viral response family protein, putative, expressed"	Medtr2g026770.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73666.1.S1_at	B	B1S	POPTR_0015s14310	POPTR_0015s14310 (7:213)	NA	NA	NA	NA	AT5G51670.1	Protein of unknown function (DUF668) 	LOC_Os03g64130.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr7g034900.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73710.1.S1_at	B	B1S	POPTR_0010s12530	POPTR_0010s12530 (6:590)	scaffold_10:12538451-12539217(+) (10)	NA	Q9ZU35	ABC transporter G family member 7	AT2G01320.1	ABC-2 type transporter family protein 	LOC_Os01g03144.1	"white-brown complex homolog protein 7, putative, expressed"	Medtr1g137310.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.73713.1.S1_at	B	B1S	POPTR_0001s11810	POPTR_0001s11810 (4:458)	NA	NA	Q9FKG3	"6-phosphofructokinase 4, chloroplastic"	AT5G61580.2	phosphofructokinase 4 	LOC_Os01g09570.1	"6-phosphofructokinase, putative, expressed"	Medtr1g112030.1	Phosphofructokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73713.2.S1_at	B	B1S	POPTR_0001s11810	POPTR_0001s11810 (3:518)	scaffold_1:9152847-9154598(-) (11)	NA	Q9FKG3	"6-phosphofructokinase 4, chloroplastic"	AT5G61580.2	phosphofructokinase 4 	LOC_Os01g09570.1	"6-phosphofructokinase, putative, expressed"	Medtr1g112030.1	Phosphofructokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73738.1.S1_at	B	B1S	POPTR_0017s06930	POPTR_0017s06930 (8:484)	NA	NA	Q8S944	Dynamin-related protein 3A	AT4G33650.1	dynamin-related protein 3A 	LOC_Os01g69130.1	"dynamin family protein, putative, expressed"	Medtr2g009740.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.73779.1.S1_at	B	B1S	POPTR_0010s22010	POPTR_0010s22010 (5:419)	NA	NA	Q9LX66	Receptor-like protein kinase HERK 1	AT3G46290.1	hercules receptor kinase 1 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g079470.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.73798.1.S1_at	B	B1S	POPTR_0001s06120	POPTR_0001s06120 (7:554)	NA	NA	P13240	Disease resistance response protein 206	AT3G13650.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	AC234702_16.1	Plant disease resistance response protein AC234702.1 90900-91694 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73868.1.A1_at	B	B1S	POPTR_0008s12580	POPTR_0008s12580 (0:134)	NA	NA	Q8T7K0	ALG-2 interacting protein X	AT1G15130.1	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os10g35250.1	"vacuolar protein-sorting protein bro1, putative, expressed"	Medtr1g137820.1	"ALG2-interacting protein X, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73897.1.A1_at	B	B1S	POPTR_0001s15660	POPTR_0001s15660 (8:806)	NA	NA	NA	NA	AT4G17350.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os10g41060.1	expressed protein	Medtr5g012930.1	"Protein of unknown function DUF828, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73954.1.S1_at	B	B1S	POPTR_0004s11790	POPTR_0004s11790 (8:64)	NA	NA	Q42290	Probable mitochondrial-processing peptidase subunit beta	AT3G02090.1	Insulinase (Peptidase family M16) protein 	LOC_Os03g11410.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.73961.1.A1_at	B	B1S	POPTR_0017s12620	POPTR_0017s12620 (2:54)	NA	NA	Q84J46	Pentatricopeptide repeat-containing protein At3g29290	AT3G29290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g11310.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015660.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73962.1.A1_s_at	B	B1S	POPTR_0002s18970	POPTR_0002s18970 (8:61)	NA	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.73971.1.A1_at	B	B1S	POPTR_0004s24320	POPTR_0004s24320 (3:447)	NA	NA	NA	NA	AT1G31720.1	Protein of unknown function (DUF1218) 	LOC_Os02g47450.1	expressed protein	Medtr5g025700.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73977.1.S1_at	B	B1S	POPTR_0009s02740	POPTR_0009s02740 (7:518)	NA	NA	Q06445	Cysteine proteinase inhibitor	AT3G12490.1	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.73983.1.A1_at	B	B1S	POPTR_0008s22910	POPTR_0008s22910 (7:560)	NA	NA	Q9NQQ7	Solute carrier family 35 member C2	AT3G17430.1	Nucleotide-sugar transporter family protein 	LOC_Os03g49570.1	"domain of unknown function, DUF250 domain containing protein, expressed"	Medtr8g134090.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73984.1.S1_at	B	B1S	POPTR_0004s15160	POPTR_0004s15160 (8:546)	NA	NA	NA	NA	AT4G23882.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr2g022340.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.73995.1.S1_at	B	B1A	POPTR_0003s01960	POPTR_0003s01960 (6:268)	NA	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74044.1.A1_at	B	B1S	POPTR_0002s10260	POPTR_0002s10260 (7:473)	scaffold_2:7368923-7369519(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74054.1.A1_at	B	B1S	POPTR_0017s12280	POPTR_0017s12280 (8:469)	NA	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g07330.1	"pentatricopeptide, putative, expressed"	Medtr3g110100.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74112.1.A1_at	B	B1S	POPTR_0015s02150	POPTR_0015s02150 (5:397)	NA	NA	Q39219	"Alternative oxidase 1a, mitochondrial"	AT3G22370.1	alternative oxidase 1A 	LOC_Os04g51150.1	"transposon protein, putative, unclassified, expressed"	Medtr5g026770.1	Alternative oxidase 	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
PtpAffx.74227.1.A1_at	B	B1S	POPTR_0014s14370	POPTR_0014s14370 (5:160)	scaffold_14:10522082-10522308(-) (10)	NA	Q9MA41	Chitinase-like protein 1	AT1G05850.1	Chitinase family protein 	LOC_Os09g32080.2	"CHIT13 - Chitinase family protein precursor, expressed"	Medtr7g021450.1	"Glycoside hydrolase, family 19 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
PtpAffx.74271.1.A1_at	B	B1S	POPTR_0005s20800	POPTR_0005s20800 (1:443)	NA	NA	O49286	F-box/LRR-repeat protein 5	AT1G77000.2	RNI-like superfamily protein 	LOC_Os05g35110.1	"OsFBL22 - F-box domain and LRR containing protein, expressed"	Medtr7g138390.2	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.74405.1.S1_at	B	B2S	POPTR_0001s23240	POPTR_0001s23240 (5:258)//POPTR_0009s02700 (0:217)	NA	NA	NA	NA	AT2G26920.1	Ubiquitin-associated/translation elongation factor EF1B protein 	LOC_Os05g33850.1	"UBA/TS-N domain containing protein, expressed"	Medtr5g095840.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74527.1.S1_at	B	B1S	POPTR_0003s13630	POPTR_0003s13630 (4:541)	scaffold_3:13967727-13969455(+) (11)	NA	NA	NA	AT4G23760.1	Cox19-like CHCH family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74528.1.S1_at	B	B1S	POPTR_0016s04300	POPTR_0016s04300 (5:97)	scaffold_16:2489287-2489435(-) (11)	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT4G20990.1	alpha carbonic anhydrase 4 	LOC_Os08g36630.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7455.3.S1_at	B	B1S	POPTR_0015s05600	POPTR_0015s05600 (3:1096)	NA	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G19950.1	RING/U-box superfamily protein 	LOC_Os10g34590.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g143590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.74657.1.S1_s_at	B	B1S	POPTR_0013s07630	POPTR_0013s07630 (6:1238)	NA	NA	Q9LX65	V-type proton ATPase subunit H	AT3G42050.1	vacuolar ATP synthase subunit H family protein 	LOC_Os07g36470.1	"vacuolar ATP synthase subunit H, putative, expressed"	Medtr8g093980.1	"Cytochrome b5; V-ATPase subunit H, C-terminal "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0000221|""vacuolar proton-transporting V-type ATPase, V1 domain"""
PtpAffx.7498.1.S1_at	B	B1S	POPTR_0009s12760	POPTR_0009s12760 (6:222)	scaffold_9:10363195-10363558(-) (11)	NA	P47909	"30S ribosomal protein S31, mitochondrial"	AT2G21290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g35900.1	expressed protein	Medtr3g163100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75102.1.S1_at	B	B1S	POPTR_0002s06920	POPTR_0002s06920 (7:257)	NA	NA	Q39117	Trihelix transcription factor GT-2	AT1G76880.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75129.1.S1_at	B	B1S	POPTR_0010s08110	POPTR_0010s08110 (8:206)	NA	NA	P42158	Casein kinase I isoform delta-like	AT3G23340.1	casein kinase I-like 10 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.75139.1.S1_at	B	B1S	POPTR_0014s17390	POPTR_0014s17390 (6:1195)	scaffold_14:13520902-13526269(-) (11)	NA	P19672	Uncharacterized protein yqxC	AT3G25470.1	bacterial hemolysin-related 	LOC_Os11g14230.1	"uncharacterized protein yqxC, putative, expressed"	NA	NA	GO:0032259|methylation||GO:0044281|small molecule metabolic process	GO:0003723|RNA binding||GO:0008168|methyltransferase activity	NA
PtpAffx.75184.1.A1_at	B	B1S	POPTR_0001s07100	POPTR_0001s07100 (8:430)	scaffold_1:5398389-5407968(-) (9)	NA	Q9SWH5	Galactoside 2-alpha-L-fucosyltransferase	AT2G03220.1	fucosyltransferase 1 	LOC_Os02g52630.1	"xyloglucan fucosyltransferase, putative, expressed"	Medtr1g112160.1	Xyloglucan fucosyltransferase 	GO:0071554|cell wall organization or biogenesis||GO:0042546|cell wall biogenesis	GO:0008107|galactoside 2-alpha-L-fucosyltransferase activity	GO:0016020|membrane
PtpAffx.75239.1.A1_at	B	B1S	POPTR_0005s25900	POPTR_0005s25900 (7:223)	scaffold_5:24108487-24109211(-) (10)	NA	NA	NA	AT1G75690.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os03g14040.3	expressed protein	Medtr1g030990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75249.1.A1_at	B	B1S	POPTR_0001s16150	POPTR_0001s16150 (4:437)	scaffold_1:12970786-12971476(+) (11)	NA	Q43128	"ATPase 10, plasma membrane-type"	AT1G17260.1	autoinhibited H(+)-ATPase isoform 10 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.75285.1.A1_at	B	B1S	POPTR_0001s36800	POPTR_0001s36800 (3:393)	NA	NA	NA	NA	AT2G34680.1	Outer arm dynein light chain 1 protein 	LOC_Os07g05470.1	"AIR9 protein, putative, expressed"	Medtr2g055450.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.75334.1.A1_at	B	B1S	POPTR_0003s04310	POPTR_0003s04310 (0:1217)	NA	NA	NA	NA	AT3G13882.1	Ribosomal protein L34 	LOC_Os01g39010.1	"50S ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.75349.1.A1_at	B	B1S	POPTR_0010s19690	POPTR_0010s19690 (5:209)	NA	NA	NA	NA	AT2G40095.1	Alpha/beta hydrolase related protein 	LOC_Os01g45960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g093490.1	"hydrolase, alpha/beta fold family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75359.2.A1_at	B	B1S	POPTR_0010s09420	POPTR_0010s09420 (8:233)	NA	NA	Q80YD1	"ATP-dependent RNA helicase SUPV3L1, mitochondrial"	AT4G14790.1	"ATP-dependent RNA helicase, mitochondrial (SUV3) "	LOC_Os03g53500.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g006820.1	"Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.75408.1.A1_at	B	B1S	POPTR_0004s17110	POPTR_0004s17110 (6:274)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75410.1.A1_at	B	B1S	POPTR_0012s13000	POPTR_0012s13000 (8:419)	scaffold_12:13327892-13328364(-) (11)	NA	NA	NA	AT5G52420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g40040.1	expressed protein	Medtr1g126770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75420.1.A1_at	B	B1S	POPTR_0018s02580	POPTR_0018s02580 (8:177)	NA	NA	Q54K50	Phospholipase D Y	NA	NA	LOC_Os06g44060.2	"phospholipase D. Active site motif family protein, expressed"	Medtr3g138360.1	Phospholipase D/Transphosphatidylase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.75453.1.A1_at	B	B1S	POPTR_0002s24360	POPTR_0002s24360 (7:251)	NA	NA	Q9FKB5	Cyclin-dependent kinase inhibitor 3	AT5G48820.1	inhibitor/interactor with cyclin-dependent kinase 	LOC_Os03g04490.1	"cyclin-dependent kinase inhibitor, putative, expressed"	Medtr7g064470.1	Cyclin-dependent kinase inhibitor 	GO:0007050|cell cycle arrest	GO:0004861|cyclin-dependent protein kinase inhibitor activity	GO:0005634|nucleus
PtpAffx.75453.2.A1_at	B	B1A	POPTR_0002s24360	POPTR_0002s24360 (8:453)	scaffold_2:21754858-21756330(-) (10)	NA	Q9FKB5	Cyclin-dependent kinase inhibitor 3	AT5G48820.1	inhibitor/interactor with cyclin-dependent kinase 	LOC_Os03g04490.1	"cyclin-dependent kinase inhibitor, putative, expressed"	Medtr7g064470.1	Cyclin-dependent kinase inhibitor 	GO:0007050|cell cycle arrest	GO:0004861|cyclin-dependent protein kinase inhibitor activity	GO:0005634|nucleus
PtpAffx.75468.1.A1_at	B	B1A	POPTR_0012s14680	POPTR_0012s14680 (7:456)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7555.1.S1_at	B	B1S	POPTR_0002s13850	POPTR_0002s13850 (1:38)	NA	NA	NA	NA	AT3G60320.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os10g41310.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g022440.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75566.2.A1_a_at	B	B2S	POPTR_0014s04950	POPTR_0014s04950 (8:671)//POPTR_0001s43430 (3:499)	NA	NA	NA	NA	AT1G34050.1	Ankyrin repeat family protein 	LOC_Os06g18990.1	"embryogenesis transmembrane protein, putative, expressed"	Medtr2g122370.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75594.1.A1_at	B	B1S	POPTR_0021s01080	POPTR_0021s01080 (8:257)	NA	NA	Q8K1N1	Calcium-independent phospholipase A2-gamma	AT1G61850.2	phospholipases;galactolipases 	LOC_Os07g33670.1	"patatin-like phospholipase family protein, expressed"	Medtr8g146470.1	Patatin 	GO:0006629|lipid metabolic process	GO:0005515|protein binding	NA
PtpAffx.75617.1.S1_at	B	B1S	POPTR_0008s20710	POPTR_0008s20710 (0:12)	scaffold_8:14618118-14618510(+) (11)	NA	NA	NA	AT3G06130.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.75684.1.A1_at	B	B1S	POPTR_0008s02360	POPTR_0008s02360 (8:590)	scaffold_8:1131544-1132105(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75695.1.A1_at	B	B1S	POPTR_0001s27110	POPTR_0001s27110 (4:266)	scaffold_1:26052002-26052419(-) (9)	NA	NA	NA	AT3G08030.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75698.1.A1_at	B	B1S	POPTR_0067s00240	POPTR_0067s00240 (8:552)	NA	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os06g38830.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr2g091010.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.75698.3.A1_a_at	B	B2S	POPTR_0067s00240	POPTR_1063s00210 (0:625)//POPTR_0067s00240 (3:565)	NA	NA	C0LGG9	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os06g38830.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr2g091010.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.75716.1.A1_s_at	B	B1S	POPTR_0012s09690	POPTR_0012s09690 (8:1408)	scaffold_12:10653461-10654527(-) (9)	NA	Q3ZCG2	Brain protein 44-like protein	AT5G20090.2	Uncharacterised protein family (UPF0041) 	LOC_Os09g20660.1	"UPF0041 domain containing protein, putative, expressed"	Medtr2g029550.1	Protein of unknown function UPF0041 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75760.1.A1_at	B	B1S	POPTR_0001s06430	POPTR_0001s06430 (1:30)	scaffold_1:4932530-4932682(-) (9)	NA	O80366	Two-component response regulator ARR9	AT3G57040.1	response regulator 9 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g039500.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.75767.1.A1_at	B	B1S	POPTR_0010s05790	POPTR_0010s05790 (7:460)	scaffold_10:7250736-7251239(-) (11)	NA	Q9LIN2	GDSL esterase/lipase At3g26430	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.75808.1.A1_at	B	B1S	POPTR_0010s06610	POPTR_0010s06610 (0:14)	scaffold_10:7908225-7908435(-) (11)	NA	NA	NA	AT5G14280.1	DNA-binding storekeeper protein-related 	NA	NA	Medtr4g136680.1	"TRAM, LAG1 and CLN8 homology "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75828.1.A1_at	B	B1S	POPTR_0007s10440	POPTR_0007s10440 (2:101)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75839.1.A1_at	B	B1A	POPTR_0017s12490	POPTR_0017s12490 (2:58)	scaffold_17:12660948-12661331(+) (11)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os06g18670.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr6g025520.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75844.1.A1_at	B	B1S	POPTR_0007s08580	POPTR_0007s08580 (0:743)	NA	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75845.1.A1_at	B	B1S	POPTR_0009s05940	POPTR_0009s05940 (0:9)	scaffold_9:5899512-5899715(+) (9)	NA	Q54FB7	Xanthine dehydrogenase	AT4G34890.1	xanthine dehydrogenase 1 	LOC_Os03g31550.1	"aldehyde oxidase, putative, expressed"	Medtr2g117560.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0051536|iron-sulfur cluster binding||GO:0046872|metal ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.75866.1.A1_at	B	B1S	POPTR_0010s00330	POPTR_0010s00330 (5:242)	scaffold_10:116543-117075(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75871.1.A1_at	B	B1S	POPTR_0003s05800	POPTR_0003s05800 (8:52)	NA	NA	Q8TEQ8	GPI ethanolamine phosphate transferase 3	AT5G17250.1	Alkaline-phosphatase-like family protein 	LOC_Os10g08940.2	expressed protein	Medtr5g033600.1	Alkaline phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.759.2.S1_at	B	B1S	POPTR_0002s20570	POPTR_0002s20570 (1:699)	NA	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.7604.3.S1_at	B	B1S	POPTR_0019s15010	POPTR_0019s15010 (0:315)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7604.7.A1_at	B	B1S	POPTR_0167s00200	POPTR_0167s00200 (6:455)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76067.1.A1_at	B	B1A	POPTR_0001s18460	POPTR_0001s18460 (2:206)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76330.1.A1_at	B	B1S	POPTR_0009s13970	POPTR_0009s13970 (5:258)	NA	NA	NA	NA	AT2G20920.1	Protein of unknown function (DUF3353) 	LOC_Os03g04440.1	expressed protein	Medtr8g115580.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.76403.1.A1_at	B	B1S	POPTR_0005s23060	POPTR_0005s23060 (7:185)	NA	NA	Q5KEW5	Mitochondrial Rho GTPase 1	AT3G63150.1	MIRO-related GTP-ase 2 	LOC_Os03g59590.1	"ATP/GTP/Ca++ binding protein, putative, expressed"	Medtr1g086440.1	"Calcium-binding EF-hand; Ras small GTPase, Rab type; ; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.76419.1.A1_at	B	B1S	POPTR_0006s08780	POPTR_0006s08780 (0:269)	NA	NA	Q9FJD5	Laccase-17	AT5G60020.1	laccase 17 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.76547.1.A1_at	B	B1S	POPTR_0001s26520	POPTR_0001s26520 (7:118)	NA	NA	Q60HC3	Heterogeneous nuclear ribonucleoprotein F	AT3G20890.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g03890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g080760.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.76559.1.A1_at	B	B1S	POPTR_0006s12240	POPTR_0006s12240 (5:339)	NA	NA	Q54F23	HEAT repeat-containing protein 7A homolog	AT2G36810.1	ARM repeat superfamily protein 	LOC_Os03g05330.1	"HEAT repeat family protein, putative, expressed"	Medtr7g124130.1	"Oxidoreductase, molybdopterin binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7681.1.A1_at	B	B1S	POPTR_0006s13000	POPTR_0006s13000 (6:64)	NA	NA	Q6K215	Probable aquaporin PIP2-2	AT2G37170.1	plasma membrane intrinsic protein 2 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.7681.5.A1_at	B	B1S	POPTR_0006s12980	POPTR_0006s12980 (7:120)	NA	NA	Q6K215	Probable aquaporin PIP2-2	AT2G37170.1	plasma membrane intrinsic protein 2 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.76877.1.S1_at	B	B1S	POPTR_0006s26180	POPTR_0006s26180 (3:135)	NA	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G25560.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os01g52110.5	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr3g135900.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.7696.4.S1_at	B	B1S	POPTR_0008s16100	POPTR_0008s16100 (7:437)	NA	NA	P32294	Auxin-induced protein 22B	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os03g43400.1	"OsIAA11 - Auxin-responsive Aux/IAA gene family member, expressed"	AC233668_17.1	AUX/IAA protein AC233668.2 65033-67329 F EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.7701.1.A1_at	B	B1S	POPTR_0019s06000	POPTR_0019s06000 (2:2886)	scaffold_19:6444850-6448807(+) (10)	NA	Q9LER0	"Pentatricopeptide repeat-containing protein At5g14770, mitochondrial"	AT5G14770.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g57800.1	"PPR repeat containing protein, expressed"	AC233659_7.1	Pentatricopeptide repeat AC233659.1 31198-26001 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77039.1.A1_at	B	B1S	POPTR_0002s22100	POPTR_0002s22100 (6:333)	scaffold_2:18812876-18813365(+) (9)	NA	NA	NA	AT2G04850.1	Auxin-responsive family protein 	LOC_Os03g09850.1	"auxin-responsive protein-related, putative, expressed"	Medtr5g105320.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77180.1.S1_at	B	B1S	POPTR_0007s11790	POPTR_0007s11790 (7:186)	NA	NA	Q39088	Dof zinc finger protein DOF3.4	AT3G50410.1	OBF binding protein 1 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	AC235757_43.1	"Zinc finger, Dof-type AC235757.1 157398-155752 E EGN_Mt090430 200"	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.77223.1.S1_at	B	B1S	POPTR_0003s04130	POPTR_0003s04130 (0:143)	NA	NA	P32897	Mitochondrial import inner membrane translocase subunit TIM23	AT1G17530.1	translocase of inner mitochondrial membrane 23 	LOC_Os03g02390.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr8g021830.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.77318.2.S1_at	B	B1S	POPTR_0004s18870	POPTR_0004s18870 (8:487)	NA	NA	Q41596	Endochitinase 1	AT3G12500.1	basic chitinase 	LOC_Os03g30470.1	"CHIT4 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
PtpAffx.77416.1.A1_at	B	B2S	POPTR_0007s03330	POPTR_0007s03330 (4:397)//POPTR_0007s03350 (3:269)	NA	NA	P17067	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.2	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr2g009540.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.77456.1.S1_at	B	B1S	POPTR_0010s20970	POPTR_0010s20970 (7:570)	NA	NA	B8FL12	Ribosomal RNA large subunit methyltransferase E	AT5G13830.1	FtsJ-like methyltransferase family protein 	LOC_Os03g60750.1	"ribosomal RNA large subunit methyltransferase J, putative, expressed"	Medtr5g087450.1	Ribosomal RNA methyltransferase RrmJ/FtsJ 	GO:0032259|methylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0008168|methyltransferase activity	NA
PtpAffx.77482.1.S1_at	B	B1S	POPTR_0008s22990	POPTR_0008s22990 (7:980)	NA	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	LOC_Os03g12350.4	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.77517.1.S1_at	B	B2S	POPTR_0015s05660	POPTR_0015s05670 (7:440)//POPTR_0015s05660 (8:440)	NA	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77522.1.S1_at	B	B1S	POPTR_0009s13600	POPTR_0009s13600 (8:440)	NA	NA	NA	NA	AT2G17840.1	Senescence/dehydration-associated protein-related 	LOC_Os06g50330.1	"senescence-associated protein, putative, expressed"	Medtr5g022360.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77528.1.A1_at	B	B2S	POPTR_0003s19410	POPTR_0003s19410 (5:1959)//POPTR_0001s06700 (0:1847)	NA	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr8g043600.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.7753.2.S1_at	B	B1S	POPTR_0001s18540	POPTR_0001s18540 (4:223)	NA	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT1G52220.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	LOC_Os01g55570.1	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77572.1.S1_at	B	B1S	POPTR_0001s44160	POPTR_0001s44160 (8:497)	NA	NA	Q3LSS0	CWF19-like protein 2	AT1G56290.1	CwfJ-like family protein 	LOC_Os03g52980.1	"CWF19-like 2, cell cycle control, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77672.3.A1_at	B	B1S	POPTR_0008s17540	POPTR_0008s17540 (7:146)	NA	NA	Q54YW1	ELMO domain-containing protein A	AT1G67400.1	ELMO/CED-12 family protein 	LOC_Os11g29350.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr3g103680.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
PtpAffx.77703.1.A1_at	B	B1S	POPTR_0010s05310	POPTR_0010s05310 (5:422)	NA	NA	NA	NA	AT1G60790.1	Plant protein of unknown function (DUF828) 	LOC_Os04g42900.1	expressed protein	Medtr5g035110.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77706.1.A1_at	B	B1S	POPTR_0010s17950	POPTR_0010s17950 (8:292)	scaffold_10:16375382-16375758(+) (11)	NA	Q0WU02	Metal tolerance protein 10	AT1G16310.1	Cation efflux family protein 	LOC_Os01g03914.2	"cation efflux family protein, putative, expressed"	Medtr3g110280.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.77720.1.A1_at	B	B1S	POPTR_0017s13420	POPTR_0017s13420 (6:1694)	NA	NA	Q15034	Probable E3 ubiquitin-protein ligase HERC3	AT3G02300.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os03g40260.1	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr7g014870.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77740.1.S1_at	B	B1S	POPTR_0008s01020	POPTR_0008s01020 (7:658)	NA	NA	P38838	DNA damage response protein WSS1	AT1G55915.1	zinc ion binding 	LOC_Os06g09170.2	"zinc ion binding protein, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.77753.1.A1_at	B	B1S	POPTR_0009s02350	POPTR_0009s02350 (0:2370)	NA	NA	Q6PGY5	DnaJ homolog subfamily C member 21	AT1G74250.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os12g31840.1	"ZOS12-05 - C2H2 zinc finger protein, expressed"	Medtr7g132840.1	"Heat shock protein DnaJ, N-terminal; Homeodomain-related; "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.77771.1.A1_at	B	B1S	POPTR_0011s04280	POPTR_0011s04280 (7:974)	NA	NA	Q5XII5	Telomerase Cajal body protein 1	AT4G21520.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g52794.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g125120.1	"Cytochrome cd1-nitrite reductase-like, C-terminal haem d1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77797.1.A1_at	B	B1S	POPTR_0019s04800	POPTR_0019s04800 (7:302)	NA	NA	Q42954	"Pyruvate kinase, cytosolic isozyme"	AT5G56350.1	Pyruvate kinase family protein 	LOC_Os01g16960.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.7780.1.S1_at	B	B1S	POPTR_0008s05940	POPTR_0008s05940 (5:362)	NA	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT5G06060.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.77820.1.A1_at	B	B2S	POPTR_0003s10840	POPTR_0003s10840 (8:331)//POPTR_0001s00640 (0:302)	NA	NA	Q5R8W6	Luc7-like protein 3	AT5G51410.3	LUC7 N_terminus domain-containing protein 	LOC_Os07g27300.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77847.1.S1_at	B	B1S	POPTR_0007s08650	POPTR_0007s08650 (7:1702)	NA	NA	Q6PKG0	La-related protein 1	AT4G35890.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g06070.1	"la domain containing protein, putative, expressed"	Medtr5g022760.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7785.1.A1_at	B	B1S	POPTR_0006s28350	POPTR_0006s28350 (7:547)	NA	NA	Q940T9	Zinc finger protein CONSTANS-LIKE 4	AT5G24930.1	CONSTANS-like 4 	LOC_Os04g42020.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr1g016230.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.77864.1.S1_at	B	B1S	POPTR_0009s05900	POPTR_0009s05900 (0:735)	NA	NA	Q8YZH7	GTPase Der	AT3G12080.1	GTP-binding family protein 	LOC_Os11g41910.1	"GTP-binding protein, putative, expressed"	CU651589_6.1	"GTP-binding protein, HSR1-related CU651589.4 33538-37140 E EGN_Mt090430 200"	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.77904.1.A1_at	B	B1S	POPTR_0009s09570	POPTR_0009s09570 (0:16)	scaffold_9:8430911-8430963(+) (11)	NA	O64628	Thioredoxin domain-containing protein 9 homolog	AT2G18990.1	thioredoxin domain-containing protein 9 homolog 	LOC_Os08g15204.1	"thioredoxin domain-containing protein 9, putative, expressed"	Medtr8g092810.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77917.1.A1_at	B	B1S	POPTR_0015s05130	POPTR_0015s05130 (6:401)	NA	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os03g51110.1	"MYB family transcription factor, putative, expressed"	Medtr6g078130.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.77938.1.A1_at	B	B1S	POPTR_0015s11610	POPTR_0015s11610 (8:449)	NA	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.78025.1.S1_at	B	B2S	POPTR_0017s14160	POPTR_0017s14160 (7:540)//POPTR_0004s10520 (0:522)	NA	NA	NA	NA	AT5G15900.1	TRICHOME BIREFRINGENCE-LIKE 19 	LOC_Os01g46400.1	expressed protein	Medtr5g036370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7804.1.A1_at	B	B2S	POPTR_0006s26010	POPTR_0006s26010 (2:179)//POPTR_0343s00200 (2:179)	scaffold_343:8739-9180(+) (11)//scaffold_6:24335042-24335483(+) (11)	NA	Q08298	Dehydration-responsive protein RD22	AT5G25610.1	BURP domain-containing protein 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr1g009580.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78103.1.A1_at	B	B1S	POPTR_0001s37010	POPTR_0001s37010 (7:289)	NA	NA	O74462	Transcription initiation factor TFIID subunit 6	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59 	LOC_Os01g32750.1	"TATA binding protein-associated factor, putative, expressed"	Medtr7g026010.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0051090|regulation of transcription factor activity||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity||GO:0016986|transcription initiation factor activity	GO:0005634|nucleus
PtpAffx.78306.1.S1_at	B	B1S	POPTR_0005s26170	POPTR_0005s26170 (1:418)	NA	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.78471.2.S1_a_at	B	B1S	POPTR_0015s11160	POPTR_0015s11160 (8:145)	NA	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os02g30650.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150810.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.78614.1.S1_at	B	B1S	POPTR_0016s12020	POPTR_0016s12020 (5:560)	NA	NA	NA	NA	AT5G01225.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr2g015160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78621.1.S1_at	B	B1A	POPTR_0002s25280	POPTR_0002s25280 (8:486)	NA	NA	NA	NA	AT5G48470.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g23790.2	expressed protein	Medtr1g008560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78715.1.S1_at	B	B1S	POPTR_0011s02820	POPTR_0011s02820 (6:110)	NA	NA	NA	NA	AT1G29790.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g42770.1	"a_IG002N01.7, putative"	Medtr5g085490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78728.1.S1_at	B	B1S	POPTR_0005s24050	POPTR_0005s24050 (5:351)	NA	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117520.1	"zinc finger family protein {Arabid, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78732.1.S1_at	B	B1S	POPTR_0018s12340	POPTR_0018s12340 (8:503)	NA	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G25270.1	Ubiquitin-like superfamily protein 	LOC_Os08g19830.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78779.1.S1_at	B	B1S	POPTR_0013s06500	POPTR_0013s06500 (8:518)	NA	NA	Q55CU8	Random slug protein 5	AT1G22180.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g51610.2	"CRAL/TRIO domain containing protein, expressed"	Medtr7g104350.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.78796.1.A1_at	B	B1S	POPTR_0008s07970	POPTR_0008s07970 (7:526)	NA	NA	Q6PEI7	CTP synthase 1	AT3G12670.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr2g080630.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.7881.1.A1_at	B	B1S	POPTR_0003s09520	POPTR_0003s09520 (6:859)	scaffold_3:10825955-10826969(+) (11)	NA	NA	NA	AT2G35500.1	shikimate kinase like 2 	LOC_Os10g42700.1	"CS domain containing protein, putative, expressed"	Medtr5g029450.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7884.1.A1_at	B	B1S	POPTR_0008s22160	POPTR_0008s22160 (8:997)	NA	NA	NA	NA	AT4G15820.1	BEST Arabidopsis thaliana protein match is: embryo defective 1703 (TAIR:AT3G61780.1); Has 524 Blast hits to 443 proteins in 102 species: Archae - 0; Bacteria - 13; Metazoa - 196; Fungi - 37; Plants - 43; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink). 	NA	NA	Medtr8g138720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.7885.3.S1_at	B	B1S	POPTR_0004s14120	POPTR_0004s14120 (6:370)	NA	NA	P80318	T-complex protein 1 subunit gamma	AT5G26360.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g34690.1	"T-complex protein, putative, expressed"	Medtr2g015240.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.790.1.A1_at	B	B1S	POPTR_0013s12490	POPTR_0013s12490 (5:74)	NA	NA	Q9SIL7	Fasciclin-like arabinogalactan protein 6	AT2G20520.1	FASCICLIN-like arabinogalactan 6 	LOC_Os01g47780.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79014.1.S1_at	B	B1S	POPTR_0010s24110	POPTR_0010s24110 (5:596)	NA	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G03730.1	Protein kinase superfamily protein 	LOC_Os02g32610.3	"protein kinase domain containing protein, expressed"	Medtr5g075410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.79036.1.S1_at	B	B1S	POPTR_0001s07350	POPTR_0001s07350 (7:446)	NA	NA	NA	NA	AT3G54360.1	zinc ion binding 	LOC_Os01g01420.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.792.1.A1_at	B	B1S	POPTR_0002s19420	POPTR_0002s19420 (5:247)	NA	NA	O22901	Transcription factor bHLH151	AT2G47270.1	sequence-specific DNA binding transcription factors;transcription regulators 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79234.1.S1_at	B	B1S	POPTR_0010s04950	POPTR_0010s04950 (8:540)	NA	NA	Q9LV16	"Probable beta-1,3-galactosyltransferase 19"	AT5G62620.1	Galactosyltransferase family protein 	LOC_Os03g58920.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g038320.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.79239.1.S1_at	B	B1S	POPTR_0008s00500	POPTR_0008s00500 (6:249)	NA	NA	NA	NA	AT3G20260.1	Protein of unknown function (DUF1666) 	LOC_Os08g40820.2	expressed protein	Medtr4g158140.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79261.1.S1_at	B	B1S	POPTR_0010s17680	POPTR_0010s17680 (7:1502)	NA	NA	NA	NA	AT3G19900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3067 (InterPro:IPR021420); Has 276 Blast hits to 276 proteins in 83 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). 	LOC_Os02g58310.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79296.1.S1_at	B	B1S	POPTR_0005s12790	POPTR_0005s12790 (0:258)	NA	NA	Q94A43	BES1/BZR1 homolog protein 2	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79312.1.S1_at	B	B1S	POPTR_0004s23480	POPTR_0004s23480 (5:820)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79359.1.S1_at	B	B1S	POPTR_0002s16060	POPTR_0002s16060 (0:313)	NA	NA	NA	NA	AT4G00500.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.79403.1.S1_at	B	B1S	POPTR_0010s19520	POPTR_0010s19520 (7:448)	NA	NA	Q9XEE6	Zinc finger CCCH domain-containing protein 29	AT2G40140.2	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g090250.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.79430.1.S1_at	B	B1S	POPTR_0003s01360	POPTR_0003s01360 (7:1089)	NA	NA	Q90515	Transmembrane emp24 domain-containing protein 10	AT1G09580.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os06g10760.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr2g007250.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.79437.1.S1_s_at	B	B2S	POPTR_0004s05770	POPTR_0004s05770 (8:35)//POPTR_0011s07130 (8:35)	NA	NA	Q39011	Shaggy-related protein kinase eta	AT4G18710.1	Protein kinase superfamily protein 	LOC_Os05g11730.1	"CGMC_GSK.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g097890.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.79574.1.A1_at	B	B1S	POPTR_0019s09970	POPTR_0019s09970 (8:443)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79722.1.S1_at	B	B2S	POPTR_0016s05990	POPTR_0016s05990 (7:1146)//POPTR_0006s20870 (3:1113)	NA	NA	O73787	Gamma-tubulin complex component 3 homolog	AT5G06680.1	spindle pole body component 98 	LOC_Os09g27370.2	"Spc97 / Spc98 family protein, putative, expressed"	Medtr7g112250.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
PtpAffx.79743.1.S1_at	B	B1S	POPTR_0006s26800	POPTR_0006s26800 (7:1679)	NA	NA	O24646	Transcription factor HY5	AT5G11260.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os02g10860.1	bZIP transcription factor domain containing protein	AC146793_14.1	"bZIP transcription factor, bZIP_1 AC146793.7 78592-81181 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.79770.2.A1_at	B	B1S	POPTR_0006s29130	POPTR_0006s29130 (8:284)	NA	NA	Q941D3	"Probable plastid-lipid-associated protein 8, chloroplastic"	AT5G19940.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g51792.1	"PAP fibrillin family domain containing protein, expressed"	NA	NA	NA	GO:0005198|structural molecule activity	NA
PtpAffx.79889.1.S1_at	B	B2S	POPTR_0008s13680	POPTR_0008s13680 (4:1087)//POPTR_0008s13670 (3:45)	NA	NA	Q9U3H8	Protein TAPT1 homolog	AT1G67960.1	"CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). "	LOC_Os03g50730.1	"transmembrane anterior posterior transformation 1, putative, expressed"	Medtr3g115210.1	"Protein of unknown function DUF747, CMV receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.79920.1.A1_at	B	B1S	POPTR_0005s22870	POPTR_0005s22870 (8:1614)	NA	NA	Q84LH8	Transcription factor PIF5	AT2G43010.2	phytochrome interacting factor 4 	LOC_Os12g41650.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g118010.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.79983.1.S1_at	B	B1S	POPTR_0012s06960	POPTR_0012s06960 (4:623)	scaffold_12:7577277-7578255(+) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G18670.1	Protein kinase superfamily protein 	LOC_Os07g40550.3	"IBS1, putative, expressed"	Medtr7g011090.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.80080.2.S1_at	B	B1S	POPTR_0007s02090	POPTR_0007s02090 (0:20)	scaffold_7:1226636-1226905(-) (11)	NA	Q2KIJ2	UPF0558 protein C1orf156 homolog	AT2G43320.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g41500.2	expressed protein	Medtr2g118160.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8011.1.S1_at	B	B1S	POPTR_0010s14080	POPTR_0010s14080 (8:487)	NA	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT3G25690.2	Hydroxyproline-rich glycoprotein family protein 	LOC_Os12g01449.1	"chloroplast unusual positioning protein, putative, expressed"	Medtr5g069490.1	"chloroplast unusual positioning 1B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80120.1.S1_at	B	B1S	POPTR_0001s41400	POPTR_0001s41400 (7:318)	NA	NA	NA	NA	AT3G15480.1	Protein of unknown function (DUF1218) 	LOC_Os07g27810.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80126.1.S1_at	B	B1S	POPTR_0007s09640	POPTR_0007s09640 (8:328)	NA	NA	Q3U2J5	Uncharacterized protein C2orf34 homolog	AT4G35987.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g14020.1	"AGAP009131-PA, putative, expressed"	Medtr8g089670.1	"Uncharacterized protein C2orf34 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80148.1.S1_at	B	B1S	POPTR_0006s13780	POPTR_0006s13780 (4:279)	NA	NA	NA	NA	AT3G43240.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os09g26390.1	"AT-rich interaction region, putative, expressed"	Medtr2g052110.1	"AT-rich interaction region; Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.8016.1.S1_at	B	B1S	POPTR_0001s09720	POPTR_0001s09720 (8:729)	NA	NA	Q38897	Homeobox protein BEL1 homolog	AT5G41410.1	POX (plant homeobox) family protein 	LOC_Os10g39030.1	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80166.1.S1_at	B	B1S	POPTR_0010s14770	POPTR_0010s14770 (6:1423)	NA	NA	NA	NA	AT1G26300.1	BSD domain-containing protein 	LOC_Os02g49450.1	"BSD domain-containing protein, putative, expressed"	Medtr5g050050.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8018.3.S1_at	B	B1S	POPTR_0015s08180	POPTR_0015s08180 (0:262)	NA	NA	Q7SXP8	Mannose-1-phosphate guanyltransferase alpha-B	AT1G74910.2	ADP-glucose pyrophosphorylase family protein 	LOC_Os03g11050.1	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr6g009470.1	Bacterial transferase hexapeptide repeat 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.802.1.S1_at	B	B1S	POPTR_0016s14960	POPTR_0016s14960 (0:236)	NA	NA	Q9ZVI6	Protein LURP-one-related 8	AT2G38640.1	Protein of unknown function (DUF567) 	LOC_Os11g02750.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126520.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80218.1.S1_at	B	B1S	POPTR_0007s10040	POPTR_0007s10040 (4:90)	NA	NA	Q43873	Peroxidase 73	AT5G67400.1	root hair specific 19 	LOC_Os07g02440.1	"peroxidase precursor, putative, expressed"	Medtr8g099370.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.80269.1.S1_at	B	B1S	POPTR_0008s01110	POPTR_0008s01110 (8:807)	scaffold_8:533891-534954(+) (10)	NA	Q94BZ1	Protein ZINC INDUCED FACILITATOR-LIKE 1	AT5G13750.1	zinc induced facilitator-like 1 	LOC_Os12g03899.3	"major facilitator superfamily antiporter, putative, expressed"	Medtr8g073830.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8027.3.A1_x_at	B	B1S	POPTR_0009s12820	POPTR_0009s12820 (8:279)	NA	NA	NA	NA	AT2G21240.2	basic pentacysteine 4 	LOC_Os06g04010.2	"GAGA-binding protein, putative, expressed"	Medtr4g151960.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80305.1.S1_at	B	B1S	POPTR_0001s09210	POPTR_0001s09210 (4:153)	scaffold_1:7059782-7060110(+) (9)	NA	Q9SH30	Putative copper-transporting ATPase 3	AT1G63440.1	heavy metal atpase 5 	LOC_Os04g46940.1	"copper-transporting ATPase 3, putative, expressed"	Medtr8g096560.1	Calcium-binding EF-hand; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.80314.1.A1_at	B	B1S	POPTR_0006s08100	POPTR_0006s08100 (8:1011)	NA	NA	Q9FWS3	Zinc finger CCCH domain-containing protein 16	AT1G75340.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os06g49080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr4g107870.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.80318.1.A1_at	B	B1S	POPTR_0018s13650	POPTR_0018s13650 (5:510)	NA	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.80321.1.A1_at	B	B1S	POPTR_0006s28150	POPTR_0006s28150 (3:534)	NA	NA	Q5R7X2	U2-associated protein SR140	AT5G25060.1	RNA recognition motif (RRM)-containing protein 	LOC_Os02g08360.1	"RNA recognition motif, putative, expressed"	Medtr8g083970.1	"SWAP/Surp; DNA-binding SAP; Regulation of nuclear pre-mRNA protein; ENTH/VHS; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.80332.1.A1_at	B	B1S	POPTR_0012s10140	POPTR_0012s10140 (0:141)	NA	NA	O13965	Meiotically up-regulated gene 70 protein	AT5G50530.1	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os01g69900.1	"CBS domain-containing protein, putative, expressed"	Medtr3g150700.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80338.1.S1_at	B	B1S	POPTR_0001s01080	POPTR_0001s01080 (8:499)	NA	NA	NA	NA	AT1G31460.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23270.1); Has 1251 Blast hits to 756 proteins in 185 species: Archae - 0; Bacteria - 295; Metazoa - 374; Fungi - 176; Plants - 58; Viruses - 17; Other Eukaryotes - 331 (source: NCBI BLink). 	NA	NA	Medtr5g026510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80344.1.A1_at	B	B1S	POPTR_0005s27580	POPTR_0005s27580 (7:493)	NA	NA	Q6DR03	Probable S-acyltransferase At2g33640	AT2G33640.1	DHHC-type zinc finger family protein 	LOC_Os04g49560.1	"zinc finger family protein, putative, expressed"	Medtr3g160020.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.80348.1.A1_at	B	B1S	POPTR_0007s14950	POPTR_0007s14950 (5:460)	NA	NA	Q8L4H4	Nodulation receptor kinase	AT2G37050.3	Leucine-rich repeat protein kinase family protein 	LOC_Os07g38070.1	"protein kinase, putative, expressed"	Medtr5g032400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.8035.2.A1_at	B	B1S	POPTR_0006s26250	POPTR_0006s26250 (7:261)	NA	NA	NA	NA	AT2G25670.2	BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink). 	LOC_Os01g08410.1	"early fruit mRNA, putative, expressed"	Medtr3g136050.1	"M355, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80372.1.A1_at	B	B3S	POPTR_0017s11400	POPTR_0017s11400 (3:338)//POPTR_0017s11380 (2:338)//POPTR_0891s00200 (2:295)	NA	NA	Q9ZQ99	Cytokinin-O-glucosyltransferase 1	AT5G12890.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g42690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g094730.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80379.1.S1_at	B	B1S	POPTR_0006s29400	POPTR_0006s29400 (8:403)	NA	NA	Q1RIM1	DNA topoisomerase 1	AT4G31210.1	"DNA topoisomerase, type IA, core "	LOC_Os06g16980.2	"DNA topoisomerase I family protein, expressed"	Medtr1g010510.1	"DNA topoisomerase I, ATP-binding; TOPRIM; ; "	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003916|DNA topoisomerase activity	GO:0005694|chromosome
PtpAffx.804.1.A1_at	B	B1A	POPTR_0002s03130	POPTR_0002s03130 (4:211)	NA	NA	P36774	Lon protease 2	AT1G75460.1	ATP-dependent protease La (LON) domain protein 	LOC_Os07g32560.1	"ATP-dependent protease, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
PtpAffx.8040.3.S1_at	B	B1S	POPTR_0015s13310	POPTR_0015s13310 (0:224)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g129270.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80411.1.A1_at	B	B1S	POPTR_0001s23030	POPTR_0001s23030 (5:273)	NA	NA	Q2V452	CBL-interacting serine/threonine-protein kinase 3	AT2G26980.3	CBL-interacting protein kinase 3 	LOC_Os12g03810.2	"CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g095470.2	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.80419.1.S1_at	B	B1S	POPTR_0019s10980	POPTR_0019s10980 (8:460)	NA	NA	NA	NA	AT1G72060.1	serine-type endopeptidase inhibitors 	NA	NA	NA	NA	NA	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.80435.1.S1_at	B	B1S	POPTR_0015s09320	POPTR_0015s09320 (8:451)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80462.1.A1_at	B	B1S	POPTR_0728s00220	POPTR_0728s00220 (0:41)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80475.1.A1_at	B	B1S	POPTR_0002s05750	POPTR_0002s05750 (1:407)	NA	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80486.1.A1_at	B	B1S	POPTR_0001s22060	POPTR_0001s22060 (0:1363)	NA	NA	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os06g43930.1	"OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.80496.1.A1_at	B	B1S	POPTR_0005s11370	POPTR_0005s11370 (0:71)	NA	NA	NA	NA	AT2G17840.1	Senescence/dehydration-associated protein-related 	LOC_Os06g50330.1	"senescence-associated protein, putative, expressed"	Medtr5g022360.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8060.1.S1_at	B	B1S	POPTR_0002s03830	POPTR_0002s03830 (5:643)	NA	NA	Q84TE6	NAC domain-containing protein 21/22	AT4G28530.1	NAC domain containing protein 74 	LOC_Os04g43560.1	"no apical meristem protein, putative, expressed"	Medtr2g076740.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.80616.1.A1_at	B	B1S	POPTR_0008s10530	POPTR_0008s10530 (8:307)	NA	NA	Q94A16	"Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial"	AT3G66654.2	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g29390.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.80627.1.A1_at	B	B1S	POPTR_0005s00850	POPTR_0005s00850 (8:511)	NA	NA	O15488	Glycogenin-2	AT1G56600.1	galactinol synthase 2 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.80659.1.A1_at	B	B1S	POPTR_0017s00990	POPTR_0017s00990 (6:259)	NA	NA	Q8LG95	Pentatricopeptide repeat-containing protein At4g21190	AT4G21190.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g55290.2	"PPR repeat domain containing protein, putative, expressed"	Medtr5g012280.1	"pentatricopeptide repeat-containing protein {Ara, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8075.2.S1_at	B	B1S	POPTR_0005s25520	POPTR_0005s25520 (7:315)	NA	NA	O94424	Transcription initiation factor IIF subunit beta	AT1G75510.1	"Transcription initiation factor IIF, beta subunit "	LOC_Os01g56550.2	"transcription initiation factor IIF beta subunit, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006367|transcription initiation from RNA polymerase II promoter	GO:0005524|ATP binding||GO:0003702|RNA polymerase II transcription factor activity	GO:0005674|transcription factor TFIIF complex
PtpAffx.80799.1.A1_a_at	B	B1S	POPTR_0014s06500	POPTR_0014s06500 (7:256)	NA	NA	Q9Y4P3	Transducin beta-like protein 2	AT4G00090.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g64110.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80799.3.A1_at	B	B1S	POPTR_0014s06500	POPTR_0014s06500 (8:1038)	NA	NA	Q9Y4P3	Transducin beta-like protein 2	AT4G00090.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g64110.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80812.1.S1_at	B	B1S	POPTR_0016s14240	POPTR_0016s14240 (8:669)	NA	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G01850.1	Protein kinase superfamily protein 	LOC_Os03g60150.1	"protein kinase domain containing protein, expressed"	Medtr7g080080.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.80828.1.S1_at	B	B2S	POPTR_0011s15120	POPTR_0011s15120 (6:441)//POPTR_0011s15130 (4:435)	NA	NA	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.80920.1.S1_at	B	B1S	POPTR_0003s10040	POPTR_0003s10040 (8:541)	NA	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30210.1	expressed protein	Medtr3g080330.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80924.2.S1_at	B	B1S	POPTR_0007s01790	POPTR_0007s01790 (7:358)	NA	NA	NA	NA	AT1G06050.1	Protein of unknown function (DUF1336) 	LOC_Os08g05640.3	"DUF1336 domain containing protein, expressed"	Medtr3g138580.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80958.1.S1_at	B	B1S	POPTR_0001s04570	POPTR_0001s04570 (3:314)	scaffold_1:3563398-3568763(-) (11)	NA	NA	NA	AT1G55265.1	"Protein of unknown function, DUF538 "	LOC_Os03g48626.1	expressed protein	Medtr4g133920.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.811.1.S1_at	B	B2S	POPTR_0001s35850	POPTR_0001s35850 (8:31)//POPTR_0001s35870 (8:31)	NA	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.811.5.A1_at	B	B2S	POPTR_0001s35900	POPTR_0001s35900 (5:338)//POPTR_0001s35850 (1:336)	NA	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81117.1.S1_at	B	B1S	POPTR_0001s07940	POPTR_0001s07940 (7:658)	NA	NA	Q4P7A4	"Putative transferase CAF17, mitochondrial"	AT4G12130.1	Glycine cleavage T-protein family 	LOC_Os06g04380.1	"aminomethyltransferase, putative, expressed"	NA	NA	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
PtpAffx.81192.1.S1_at	B	B3S	POPTR_0013s14590	POPTR_0151s00200 (6:507)//POPTR_0019s14170 (3:492)//POPTR_0013s14590 (7:413)	scaffold_13:14758581-14759090(-) (9)	NA	O64477	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	AT2G19130.1	S-locus lectin protein kinase family protein 	LOC_Os07g36780.1	"S-domain receptor-like protein kinase, putative, expressed"	Medtr2g103160.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.8133.3.A1_at	B	B1S	POPTR_0003s10430	POPTR_0003s10430 (2:1649)	scaffold_3:11415467-11417340(-) (11)	NA	NA	NA	AT4G34660.1	SH3 domain-containing protein 	LOC_Os03g16000.1	"src homology-3 domain protein 3, putative, expressed"	Medtr5g026540.1	SH3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81486.1.S1_at	B	B1S	POPTR_0001s02000	POPTR_0001s02000 (4:198)	NA	NA	Q0P3L5	"50S ribosomal protein L14, chloroplastic"	AT5G46160.2	Ribosomal protein L14p/L23e family protein 	LOC_Os12g42180.1	"ribosomal protein, putative, expressed"	Medtr5g104080.1	"Ribosomal protein L14, bacterial and organelle form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.81568.1.A1_at	B	B1S	POPTR_0007s04130	POPTR_0007s04130 (4:228)	scaffold_7:2489245-2489748(+) (9)	NA	Q9FY84	Probable gamma-secretase subunit PEN-2	AT5G09310.1	"CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast hits to 168 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). "	LOC_Os01g72960.1	expressed protein	Medtr3g143320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81590.1.A1_at	B	B1S	POPTR_0009s02610	POPTR_0009s02610 (7:537)	scaffold_9:3393697-3394268(+) (9)	NA	Q2V452	CBL-interacting serine/threonine-protein kinase 3	AT2G26980.3	CBL-interacting protein kinase 3 	LOC_Os12g03810.2	"CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g095470.2	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.81789.1.S1_at	B	B4S	POPTR_0017s00810	POPTR_0017s03320 (2:542)//POPTR_0017s03330 (3:536)//POPTR_0017s00810 (4:536)//POPTR_0017s00820 (2:532)	NA	NA	Q9SHY2	Probable metal-nicotianamine transporter YSL7	AT1G65730.1	YELLOW STRIPE like 7 	LOC_Os04g44320.1	"transposon protein, putative, unclassified, expressed"	Medtr6g089710.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81797.1.A1_at	B	B2S	POPTR_0004s01915	POPTR_0004s01910 (0:3325)//POPTR_0004s01915 (7:2771)	scaffold_4:1175826-1185998(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81826.1.A1_at	B	B1S	POPTR_0019s10640	POPTR_0019s10640 (4:417)	NA	NA	Q641I1	Protein FAM135B	AT1G58350.2	Putative serine esterase  family protein 	LOC_Os12g06800.1	"serine esterase family protein, putative, expressed"	Medtr3g127940.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81900.2.S1_at	B	B1S	POPTR_0010s21410	POPTR_0010s21410 (2:1277)	scaffold_10:18701799-18703338(-) (9)	NA	NA	NA	AT3G12587.1	Oligosaccaryltransferase 	NA	NA	Medtr7g118190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.81945.1.A1_at	B	B1S	POPTR_0001s27810	POPTR_0001s27810 (7:254)	NA	NA	Q38813	"Chaperone protein dnaJ 1, mitochondrial"	AT5G48030.1	gametophytic factor 2 	LOC_Os12g07060.1	"chaperone protein dnaJ, putative, expressed"	Medtr3g030790.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.81968.1.A1_at	B	B1S	POPTR_0011s04740	POPTR_0011s04740 (5:871)	NA	NA	Q13435	Splicing factor 3B subunit 2	AT4G21660.1	proline-rich spliceosome-associated (PSP) family protein 	LOC_Os02g58090.1	"PSP domain containing protein, expressed"	Medtr2g015040.1	"PSP, proline-rich "	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	NA	GO:0005634|nucleus
PtpAffx.81994.1.A1_at	B	B1S	POPTR_0001s21940	POPTR_0001s21940 (8:387)	NA	NA	NA	NA	AT1G22030.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g01400.1	expressed protein	Medtr4g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82017.1.A1_at	B	B1S	POPTR_0006s10000	POPTR_0006s10000 (1:107)	scaffold_6:7431448-7431950(-) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g29790.1	"receptor kinase, putative"	Medtr5g026130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.82060.1.A1_at	B	B1A	POPTR_0003s20960	POPTR_0003s20960 (7:367)	scaffold_3:19291849-19292327(-) (11)	NA	NA	NA	AT5G56520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55365.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82064.1.A1_at	B	B1S	POPTR_0010s24380	POPTR_0010s24380 (7:1091)	NA	NA	Q8CIA9	Hippocampus abundant transcript-like protein 1	AT3G20930.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr1g117260.1	Major facilitator superfamily MFS_1 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.82098.1.A1_at	B	B1S	POPTR_0007s05200	POPTR_0007s05200 (2:253)	NA	NA	Q7T3H7	Mediator of RNA polymerase II transcription subunit 18	AT2G22370.1	unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g10050.1	expressed protein	Medtr5g047410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82194.1.A1_at	B	B1S	POPTR_0001s10480	POPTR_0001s10480 (3:333)	scaffold_1:8132618-8133366(+) (9)	NA	NA	NA	AT1G64355.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3593 (InterPro:IPR021995); Has 301 Blast hits to 301 proteins in 96 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). 	LOC_Os05g49650.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82242.1.A1_at	B	B1S	POPTR_0001s08650	POPTR_0001s08650 (0:5)	scaffold_1:6598112-6598611(-) (9)	NA	P35084	DNA-directed RNA polymerase II subunit rpb1	AT1G63020.2	nuclear RNA polymerase D1A 	LOC_Os04g48370.1	"RNA polymerase IV subunit, putative, expressed"	Medtr5g011130.1	"RNA polymerase Rpb1, domain 4 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.82244.1.A1_at	B	B1S	POPTR_0001s14730	POPTR_0001s14730 (8:240)	NA	NA	Q38942	Rae1-like protein At1g80670	AT1G80670.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g07960.2	"mitotic checkpoint protein, putative, expressed"	Medtr2g008550.1	"Peptidase, cysteine peptidase active site; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82275.1.A1_at	B	B1A	POPTR_0017s07690	POPTR_0017s07690 (2:293)	scaffold_17:5977224-5977732(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82329.1.A1_at	B	B1S	POPTR_0005s08430	POPTR_0005s08430 (0:150)	NA	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82343.1.A1_at	B	B1S	POPTR_0012s08850	POPTR_0012s08850 (2:284)	NA	NA	P49689	40S ribosomal protein S30	AT5G56670.1	Ribosomal protein S30 family protein 	LOC_Os06g07580.2	expressed protein	Medtr5g012690.1	Ribosomal protein S30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.82396.1.A1_at	B	B1S	POPTR_0013s09220	POPTR_0013s09220 (7:1893)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82399.1.A1_at	B	B1S	POPTR_0001s24510	POPTR_0001s24510 (2:131)	scaffold_1:23764978-23765421(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82405.1.A1_at	B	B1S	POPTR_0006s00230	POPTR_0006s00230 (8:534)	NA	NA	Q9Y805	Pre-mRNA-splicing factor cwc25	AT2G44200.1	"CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor "	LOC_Os08g39090.1	"coiled-coil domain containing 49, putative, expressed"	Medtr2g033720.1	"coiled-coil domain containing 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82453.1.S1_at	B	B1S	POPTR_0010s12140	POPTR_0010s12140 (7:315)	NA	NA	NA	NA	AT1G23110.4	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1). 	LOC_Os08g33640.2	expressed protein	Medtr1g034920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82455.1.A1_at	B	B1S	POPTR_0018s10150	POPTR_0018s10150 (3:150)	scaffold_18:11144872-11145334(+) (11)	NA	Q9ZUY1	"Pentatricopeptide repeat-containing protein At2g27800, mitochondrial"	AT2G27800.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g54380.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g080760.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82458.1.A1_at	B	B1S	POPTR_0009s05930	POPTR_0009s05930 (8:749)	NA	NA	Q8LG50	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	AT3G57650.1	lysophosphatidyl acyltransferase 2 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.82510.2.A1_at	B	B1A	POPTR_0031s00245	POPTR_0031s00245 (7:149)	scaffold_31:55732-55951(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82512.2.A1_a_at	B	B1S	POPTR_0014s09520	POPTR_0014s09520 (7:2817)	scaffold_14:7066485-7069453(-) (11)	NA	Q9LNJ5	Transcription factor bHLH13	AT1G01260.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g13460.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.82534.1.A1_at	B	B1S	POPTR_0005s20820	POPTR_0005s20820 (3:231)	NA	NA	O49289	Putative DEAD-box ATP-dependent RNA helicase 29	AT1G77030.1	"hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases "	LOC_Os08g32090.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr4g109140.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.82535.1.A1_at	B	B1S	POPTR_0014s05470	POPTR_0014s05470 (0:2)	NA	NA	P42825	Chaperone protein dnaJ 2	AT5G22060.1	DNAJ homologue 2 	LOC_Os04g46390.2	"chaperone protein dnaJ, putative, expressed"	Medtr8g006170.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	NA
PtpAffx.82589.1.A1_at	B	B1S	POPTR_0015s10410	POPTR_0015s10410 (2:612)	NA	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.82658.1.A1_at	B	B1S	POPTR_0004s12210	POPTR_0004s12210 (6:368)	NA	NA	Q9MAC5	Polypyrimidine tract-binding protein homolog 1	AT3G01150.1	polypyrimidine tract-binding protein 1 	LOC_Os08g33830.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr3g124540.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.82760.1.A1_at	B	B1S	POPTR_0002s01460	POPTR_0002s01460 (0:273)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82797.1.A1_at	B	B1S	POPTR_0019s09640	POPTR_0019s09640 (6:487)	NA	NA	Q5ZJX4	RNA-binding protein 38	AT1G33470.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g041420.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.82799.1.A1_s_at	B	B1S	POPTR_0001s19110	POPTR_0001s19110 (8:1517)	NA	NA	C0LGT5	Probable LRR receptor-like serine/threonine-protein kinase At5g16900	AT1G51940.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os01g53840.1	"protein kinase family protein, putative, expressed"	Medtr8g016010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.82898.1.A1_at	B	B1S	POPTR_0013s15400	POPTR_0013s15400 (4:271)	NA	NA	NA	NA	AT5G58320.2	Kinase interacting (KIP1-like) family protein 	LOC_Os01g07370.2	"KIP1, putative, expressed"	Medtr5g083340.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82908.1.A1_at	B	B1A	POPTR_0008s12290	POPTR_0008s12290 (7:242)	scaffold_8:7938057-7938340(+) (9)	NA	NA	NA	AT1G68430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g140410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83045.1.S1_at	B	B1S	POPTR_0010s05400	POPTR_0010s05400 (7:544)	NA	NA	Q8LPT9	"Alpha-glucan water dikinase, chloroplastic"	AT1G10760.1	"Pyruvate phosphate dikinase, PEP/pyruvate binding domain "	LOC_Os06g30310.1	"alpha-glucan water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.8326.1.A1_at	B	B1S	POPTR_0008s13290	POPTR_0008s13290 (0:12)	NA	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.3	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.833.2.S1_at	B	B1S	POPTR_0004s16560	POPTR_0004s16560 (8:414)	NA	NA	P24068	Ocs element-binding factor 1	AT1G75390.1	basic leucine-zipper 44 	LOC_Os02g03960.1	"CPuORF1 - conserved peptide uORF-containing transcript, expressed"	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.83466.1.A1_at	B	B1S	POPTR_0006s05140	POPTR_0006s05140 (7:778)	scaffold_6:3587185-3588039(-) (9)	NA	Q6NLQ6	Calcium-dependent protein kinase 32	AT3G57530.1	calcium-dependent protein kinase 32 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g144630.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.83523.1.S1_at	B	B1S	POPTR_0008s06100	POPTR_0008s06100 (3:368)	scaffold_8:3606563-3607428(-) (11)	NA	Q3B7M6	Protein NEDD1	AT5G05970.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os09g09470.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g088530.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83555.1.S1_at	B	B1S	POPTR_0008s13430	POPTR_0008s13430 (0:83)	NA	NA	O75694	Nuclear pore complex protein Nup155	AT1G14850.1	nucleoporin 155 	LOC_Os06g20090.1	"NUP155, putative, expressed"	Medtr4g157110.1	Non-repetitive/WGA-negative nucleoporin 	GO:0006913|nucleocytoplasmic transport	GO:0017056|structural constituent of nuclear pore	GO:0005643|nuclear pore
PtpAffx.83575.1.S1_at	B	B1S	POPTR_0011s04510	POPTR_0011s04510 (8:2011)	scaffold_11:4471534-4473545(-) (9)	NA	NA	NA	AT1G61240.4	Protein of unknown function (DUF707) 	LOC_Os07g37760.2	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g013740.2	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83582.1.S1_at	B	B1S	POPTR_0002s12340	POPTR_0002s12340 (7:502)	NA	NA	P93147	Isoflavone 2'-hydroxylase	AT5G10610.1	"cytochrome P450, family 81, subfamily K, polypeptide 1 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.8361.1.S1_at	B	B1S	POPTR_0002s08910	POPTR_0002s08910 (7:280)	scaffold_2:6287749-6288394(-) (11)	NA	Q9CA19	"Small ribosomal subunit protein S13, mitochondrial"	AT1G77750.1	Ribosomal protein S13/S18 family 	LOC_Os03g49710.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr3g098290.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.83663.1.A1_at	B	B2S	POPTR_0661s00200	POPTR_0661s00200 (8:490)//POPTR_0019s00340 (7:347)	NA	NA	Q9SZB9	Peroxidase 47	AT4G33420.1	Peroxidase superfamily protein 	LOC_Os08g02110.1	"peroxidase precursor, putative, expressed"	Medtr7g035100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.8368.1.S1_at	B	B1S	POPTR_0014s18830	POPTR_0014s18830 (3:215)	scaffold_14:16335817-16336338(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83765.1.S1_at	B	B1S	POPTR_0018s12410	POPTR_0018s12410 (1:418)	NA	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr8g122340.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83818.1.S1_at	B	B1S	POPTR_0007s04730	POPTR_0007s04730 (0:63)	NA	NA	NA	NA	AT4G33480.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3727 (InterPro:IPR022203); Has 348 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). 	LOC_Os04g59570.2	expressed protein	Medtr4g143310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8382.2.A1_at	B	B1S	POPTR_0013s04010	POPTR_0013s04010 (3:37)	NA	NA	NA	NA	AT1G54460.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8386.1.S1_at	B	B1S	POPTR_0017s01640	POPTR_0017s01640 (0:323)	NA	NA	NA	NA	AT4G25670.2	"unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2). "	LOC_Os06g01770.2	expressed protein	Medtr1g126490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8387.2.A1_at	B	B1S	POPTR_0004s01200	POPTR_0004s01200 (0:7)	scaffold_4:650067-650468(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.83912.1.S1_at	B	B1S	POPTR_0015s01240	POPTR_0015s01240 (0:359)	NA	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT5G24318.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os07g13580.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr1g008920.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.83913.1.S1_at	B	B1S	POPTR_0013s04030	POPTR_0013s04030 (8:284)	scaffold_13:2654944-2659006(+) (9)	NA	P57722	Poly(rC)-binding protein 3	AT3G04610.1	RNA-binding KH domain-containing protein 	LOC_Os03g42900.1	"KH domain containing protein, putative, expressed"	Medtr8g129730.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.83924.1.S1_at	B	B1A	POPTR_0017s06650	POPTR_0017s06650 (6:395)	NA	NA	Q11011	Puromycin-sensitive aminopeptidase	AT4G33090.1	aminopeptidase M1 	LOC_Os08g30810.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.84147.1.A1_at	B	B1S	POPTR_0018s07290	POPTR_0018s07290 (0:162)	NA	NA	Q9URW6	SH3 domain-containing protein PJ696.02	AT3G43230.1	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os07g17130.1	"FYVE zinc finger domain containing protein, expressed"	Medtr8g133230.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84152.1.A1_s_at	B	B1S	POPTR_0013s08910	POPTR_0013s08910 (5:203)	scaffold_13:8426454-8431202(+) (10)	NA	Q5PPG7	Ligatin	AT1G71350.1	eukaryotic translation initiation factor SUI1 family protein 	LOC_Os02g35160.1	"ligatin, putative, expressed"	Medtr4g031820.1	Translation initiation factor SUI1; PUA 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.84154.1.A1_at	B	B1S	POPTR_0012s03920	POPTR_0012s03920 (6:759)	NA	NA	Q54ZW0	Putative phagocytic receptor 1b	AT2G01970.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.84175.1.A1_at	B	B1S	POPTR_0010s05900	POPTR_0010s05900 (7:216)	NA	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os01g62080.2	"serine/threonine-protein kinase AFC1, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.84176.1.A1_at	B	B1S	POPTR_0008s12050	POPTR_0008s12050 (0:371)	NA	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT1G13410.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g38880.1	"tetratricopeptide-like helical, putative, expressed"	Medtr8g077580.1	Asp/Glu racemase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84179.1.A1_at	B	B1S	POPTR_0011s07180	POPTR_0011s07180 (5:1098)	NA	NA	Q9UHR5	SAP30-binding protein	AT1G29220.1	transcriptional regulator family protein 	LOC_Os01g55490.1	"transcriptional regulator family protein, putative, expressed"	Medtr1g107610.1	HCNGP-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84185.1.S1_a_at	B	B1S	POPTR_0001s04030	POPTR_0001s04030 (5:108)	scaffold_1:3192824-3193108(-) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84319.1.A1_at	B	B1S	POPTR_0011s12650	POPTR_0011s12650 (0:206)	NA	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.8454.2.S1_at	B	B2S	POPTR_0017s11780	POPTR_0017s11780 (5:504)//POPTR_0017s11770 (0:503)	NA	NA	P87216	Protein vip1	AT1G14340.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g54870.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g040130.1	"Aldo/keto reductase; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.84672.1.S1_at	B	B1S	POPTR_0001s18470	POPTR_0001s18470 (0:8)	scaffold_1:15518846-15519048(-) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.84718.1.S1_at	B	B1S	POPTR_0018s10330	POPTR_0018s10330 (0:273)	NA	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.84833.2.S1_at	B	B2S	POPTR_0013s03740	POPTR_0013s03740 (8:405)//POPTR_0013s03750 (7:404)	NA	NA	P40691	Auxin-induced protein PCNT115	AT1G60710.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g28320.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g140850.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.84852.1.A1_at	B	B2S	POPTR_0011s13930	POPTR_0011s13930 (8:984)//POPTR_0001s44620 (1:714)	NA	NA	O50046	"Tryptophan synthase beta chain 2, chloroplastic"	AT4G27070.1	tryptophan synthase beta-subunit 2 	LOC_Os08g04180.1	"tryptophan synthase beta chain 1, putative, expressed"	Medtr3g064270.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.84890.1.S1_at	B	B1S	POPTR_0017s01160	POPTR_0017s01160 (6:385)	NA	NA	P51819	Heat shock protein 83	AT5G52640.1	heat shock protein 90.1 	LOC_Os04g01740.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.85080.1.S1_at	B	B1S	POPTR_0001s44250	POPTR_0001s44250 (6:598)	NA	NA	Q9FH36	Probable galacturonosyltransferase 12	AT5G54690.1	galacturonosyltransferase 12 	LOC_Os12g38930.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g096780.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.85115.1.S1_at	B	B1S	POPTR_0006s02620	POPTR_0006s02620 (6:430)	NA	NA	Q3MG79	Putative ribosome biogenesis GTPase RsgA	AT1G67440.1	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os04g31270.1	"EMB1688, putative, expressed"	Medtr3g103630.1	GTPase EngC 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.85122.1.S1_at	B	B2S	POPTR_0008s01660	POPTR_0008s01660 (8:489)//POPTR_0162s00240 (7:489)	NA	NA	NA	NA	AT1G73970.1	unknown protein; Has 34 Blast hits to 33 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g03090.1	expressed protein	Medtr3g016590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85129.1.S1_s_at	B	B1S	POPTR_0003s15140	POPTR_0003s15140 (8:185)	NA	NA	Q38890	Endoglucanase 25	AT5G49720.1	glycosyl hydrolase 9A1 	LOC_Os03g21210.1	"endoglucanase, putative, expressed"	Medtr2g034060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.85141.1.S1_at	B	B1S	POPTR_0003s13000	POPTR_0003s13000 (6:524)	NA	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G41350.1	RING/U-box superfamily protein 	LOC_Os11g18947.2	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_12.1	"Zinc finger, RING-type AC235567.1 46372-52293 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8521.2.S1_at	B	B1S	POPTR_0010s09950	POPTR_0010s09950 (8:1347)	NA	NA	Q09893	Uncharacterized protein C24B11.05	AT2G32150.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g49440.1	"phosphatase, putative, expressed"	Medtr1g132580.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.8521.6.S1_at	B	B1S	POPTR_0008s15110	POPTR_0008s15110 (8:522)	NA	NA	Q09893	Uncharacterized protein C24B11.05	AT2G32150.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g49440.1	"phosphatase, putative, expressed"	Medtr1g132580.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.85214.1.S1_at	B	B1S	POPTR_0007s13380	POPTR_0007s13380 (5:514)	NA	NA	P24068	Ocs element-binding factor 1	AT1G75390.1	basic leucine-zipper 44 	LOC_Os08g26880.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.85220.1.S1_at	B	B1S	POPTR_1452s00200	POPTR_1452s00200 (5:398)	NA	NA	NA	NA	AT2G38790.1	unknown protein; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8523.6.S1_at	B	B1S	POPTR_0003s20980	POPTR_0003s20980 (6:272)	NA	NA	NA	NA	AT1G55360.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8523.8.S1_at	B	B1S	POPTR_0003s20980	POPTR_0003s20980 (5:317)	NA	NA	NA	NA	AT1G55360.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85297.1.S1_s_at	B	B1S	POPTR_0005s07990	POPTR_0005s07990 (4:314)	scaffold_5:5499486-5500165(-) (11)	NA	Q6MEW4	"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase"	AT1G22170.1	Phosphoglycerate mutase family protein 	LOC_Os02g51590.1	"phosphoglycerate mutase, putative, expressed"	CU651566_7.1	Phosphoglycerate mutase 1 CU651566.9 30664-34534 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85458.1.S1_at	B	B1S	POPTR_0006s09140	POPTR_0006s09140 (5:399)	NA	NA	Q945M8	UPF0497 membrane protein At3g53850	AT3G53850.1	Uncharacterised protein family (UPF0497) 	LOC_Os09g07480.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g018930.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85466.1.S1_at	B	B1S	POPTR_0010s18820	POPTR_0010s18820 (0:155)	NA	NA	Q8BXJ9	Transmembrane protein 62	AT3G03305.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g66920.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g090110.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.85471.2.S1_at	B	B1S	POPTR_0008s15430	POPTR_0008s15430 (3:167)	scaffold_8:10266274-10266639(-) (10)	NA	NA	NA	AT3G22540.1	Protein of unknown function (DUF1677) 	LOC_Os03g46300.1	conserved hypothetical protein	Medtr5g006550.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85486.1.S1_at	B	B1S	POPTR_0001s40470	POPTR_0001s40470 (7:329)	NA	NA	Q5R7A2	Chitobiosyldiphosphodolichol beta-mannosyltransferase	AT1G16570.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g08300.2	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr2g088500.1	"Glycosyl transferase, group 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85524.1.S1_at	B	B1S	POPTR_0010s08560	POPTR_0010s08560 (0:141)	NA	NA	Q8VYR4	Cellulose synthase-like protein G2	AT4G24000.1	cellulose synthase like G2 	LOC_Os09g30130.1	"CSLE6 - cellulose synthase-like family E, expressed"	Medtr2g042560.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.85561.1.S1_s_at	B	B1S	POPTR_0002s05740	POPTR_0002s05740 (4:84)	scaffold_2:3763197-3763716(+) (11)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr5g097890.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.85580.1.S1_at	B	B1S	POPTR_0006s12640	POPTR_0006s12640 (8:704)	NA	NA	Q9HLX5	Histidyl-tRNA synthetase	AT3G46100.1	Histidyl-tRNA synthetase 1 	LOC_Os02g51830.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr7g123930.1	Histidyl-tRNA synthetase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.8561.1.S1_a_at	B	B1S	POPTR_0008s04390	POPTR_0008s04390 (5:281)	scaffold_8:2467800-2468180(+) (10)	NA	Q9ARD5	Low temperature-induced protein lt101.2	AT2G38905.1	Low temperature and salt responsive protein family 	LOC_Os03g17790.1	"OsRCI2-5 - Putative low temperature and salt responsive protein, expressed"	Medtr7g134790.1	Protein of unknown function UPF0057 	NA	NA	GO:0016021|integral to membrane
PtpAffx.85619.1.S1_at	B	B1S	POPTR_0010s25920	POPTR_0010s25920 (5:624)	NA	NA	NA	NA	AT1G16850.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85620.1.S1_at	B	B1S	POPTR_0013s04370	POPTR_0013s04370 (8:485)	NA	NA	Q3UXZ9	Lysine-specific demethylase 5A	AT1G08620.2	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os05g10770.1	"transcription factor jumonji, putative, expressed"	AC225479_20.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; FY-rich, C-terminal; Zinc finger, C5HC2-type AC225479.3 88241-93710 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.85637.1.A1_at	B	B1S	POPTR_0006s02220	POPTR_0006s02220 (8:113)	NA	NA	Q9FHZ1	Scarecrow-like protein 23	AT5G41920.1	GRAS family transcription factor 	LOC_Os07g38030.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g103580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85663.1.S1_at	B	B1S	POPTR_0004s10600	POPTR_0004s10600 (8:1649)	NA	NA	Q9FVR6	"Uncharacterized protein At1g32220, chloroplastic"	AT5G10730.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g35039.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138720.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8577.2.A1_at	B	B1S	POPTR_0002s09900	POPTR_0002s09900 (5:295)	scaffold_2:7104826-7105299(+) (11)	NA	NA	NA	AT4G08950.1	Phosphate-responsive 1 family protein 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g144900.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85779.1.S1_at	B	B1S	POPTR_0014s13580	POPTR_0014s13580 (8:636)	NA	NA	NA	NA	AT3G26670.3	Protein of unknown function (DUF803) 	LOC_Os02g31874.1	"DUF803 domain containing, putative, expressed"	Medtr3g105270.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85804.1.S1_at	B	B1S	POPTR_0001s12420	POPTR_0001s12420 (6:182)	NA	NA	Q9SYQ8	Receptor protein kinase CLAVATA1	AT4G20270.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g56270.2	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr5g097160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.85831.1.S1_at	B	B2S	POPTR_0011s11190	POPTR_0001s40250 (0:276)//POPTR_0011s11190 (8:270)	NA	NA	Q02909	"Phosphoenolpyruvate carboxylase, housekeeping isozyme"	AT3G14940.1	phosphoenolpyruvate carboxylase 3 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.85844.1.S1_at	B	B1S	POPTR_0002s18600	POPTR_0002s18600 (7:273)	NA	NA	NA	NA	AT4G01650.1	Polyketide cyclase / dehydrase and lipid transport protein 	LOC_Os01g74010.1	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85855.1.S1_at	B	B1S	POPTR_0005s02800	POPTR_0005s02800 (8:929)	scaffold_5:1791653-1798543(+) (10)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.2	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85909.1.S1_at	B	B1S	POPTR_0002s04190	POPTR_0002s04190 (5:788)	NA	NA	NA	NA	AT2G42450.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g39790.1	"lipase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85976.1.A1_at	B	B1S	POPTR_0002s11160	POPTR_0002s11160 (8:1737)	NA	NA	Q54U63	BEACH domain-containing protein lvsC	AT1G58230.1	binding 	LOC_Os02g06720.1	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.85976.2.A1_at	B	B1S	POPTR_0002s11160	POPTR_0002s11160 (7:509)	NA	NA	Q54U63	BEACH domain-containing protein lvsC	AT1G58230.1	binding 	LOC_Os02g06720.1	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86.1.S1_at	B	B1S	POPTR_0011s04620	POPTR_0011s04620 (8:519)	NA	NA	Q9FIY7	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3	AT1G61140.3	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related 	LOC_Os01g57110.2	"SNF2 family N-terminal domain containing protein, expressed"	Medtr2g014500.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.86132.1.A1_a_at	B	B1S	POPTR_0007s01630	POPTR_0007s01630 (4:441)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT2G28580.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8616.1.A1_at	B	B1S	POPTR_0011s03970	POPTR_0011s03970 (4:202)	scaffold_11:4020890-4024722(-) (11)	NA	NA	NA	AT1G11360.4	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g57450.1	"universal stress protein domain containing protein, putative, expressed"	Medtr2g103170.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.86171.1.S1_at	B	B1S	POPTR_0016s09630	POPTR_0016s09630 (6:228)	NA	NA	NA	NA	AT5G03380.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g05750.1	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr7g123850.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.8627.2.S1_at	B	B1S	POPTR_0007s02410	POPTR_0007s02410 (7:540)	NA	NA	NA	NA	AT2G43210.2	Ubiquitin-like superfamily protein 	LOC_Os11g18880.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86393.2.A1_at	B	B1A	POPTR_0002s03800	POPTR_0002s03800 (5:454)	NA	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.864.1.A1_at	B	B1S	POPTR_0008s01470	POPTR_0008s01470 (7:374)	NA	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT5G04895.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.86422.1.A1_at	B	B1A	POPTR_0008s14500	POPTR_0008s14500 (6:420)	scaffold_8:9625472-9626039(-) (11)	NA	Q9FJ76	Probable long-chain-alcohol O-fatty-acyltransferase 5	AT5G55340.1	MBOAT (membrane bound O-acyl transferase) family protein 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr5g101580.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86548.1.S1_at	B	B1S	POPTR_0006s05290	POPTR_0006s05290 (8:608)	NA	NA	NA	NA	AT3G57570.1	ARM repeat superfamily protein 	NA	NA	Medtr7g110840.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86554.2.A1_at	B	B1S	POPTR_0010s12220	POPTR_0010s12220 (7:245)	NA	NA	Q9C6Z2	Nudix hydrolase 25	AT1G30110.2	nudix hydrolase homolog 25 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g034570.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.86604.1.S1_at	B	B1S	POPTR_0016s13280	POPTR_0016s13280 (8:494)	NA	NA	Q9XIV8	Peroxidase N1	AT2G41480.1	Peroxidase superfamily protein 	LOC_Os01g07770.1	"peroxidase precursor, putative"	Medtr2g008770.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.86616.1.S1_at	B	B1S	POPTR_0009s03070	POPTR_0009s03070 (7:760)	NA	NA	Q9XES1	"Calcium-transporting ATPase 4, endoplasmic reticulum-type"	AT1G07670.1	endomembrane-type CA-ATPase 4 	LOC_Os03g17310.1	"calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed"	Medtr7g120500.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.86620.1.S1_at	B	B1S	POPTR_0005s02400	POPTR_0005s02400 (4:350)	NA	NA	NA	NA	AT5G27830.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g37940.2	"CRP12 - Cysteine-rich family protein precursor, expressed"	Medtr1g099950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86629.1.S1_at	B	B1S	POPTR_0007s08330	POPTR_0007s08330 (7:437)	NA	NA	Q8LGM7	Molybdenum cofactor sulfurase	AT1G16540.1	molybdenum cofactor sulfurase (LOS5) (ABA3) 	LOC_Os06g45860.1	"molybdenum cofactor sulfurase, putative, expressed"	Medtr4g032080.1	"Aminotransferase, class V; MOSC; MOSC, N-terminal beta barrel; "	NA	GO:0003824|catalytic activity||GO:0030151|molybdenum ion binding||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.86646.1.S1_at	B	B1S	POPTR_0003s02530	POPTR_0003s02530 (7:493)	NA	NA	NA	NA	AT1G15290.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86647.1.S1_at	B	B1S	POPTR_0016s05450	POPTR_0016s05450 (0:18)	NA	NA	Q64520	Guanylate kinase	AT3G57550.2	guanylate kinase 	LOC_Os12g33100.1	"guanylate kinase, putative, expressed"	Medtr7g110630.2	Guanylate kinase/L-type calcium channel region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86650.1.S1_at	B	B1S	POPTR_0003s03400	POPTR_0003s03400 (3:358)	NA	NA	NA	NA	AT4G17670.1	Protein of unknown function (DUF581) 	LOC_Os04g49660.1	"DUF581 domain containing protein, expressed"	Medtr5g013920.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86652.1.S1_at	B	B1S	POPTR_0003s14230	POPTR_0003s14230 (7:2032)	NA	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.1	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr3g079520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.86661.1.S1_at	B	B1S	POPTR_0018s10820	POPTR_0018s10820 (3:294)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8667.1.S1_at	B	B1S	POPTR_0004s23710	POPTR_0004s23710 (8:1566)	scaffold_4:22342133-22346851(-) (9)	NA	Q8CPI3	3-oxoacyl-[acyl-carrier-protein] reductase	AT1G10310.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g35170.1	"uncharacterized oxidoreductase yoxD, putative, expressed"	Medtr4g096040.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.86726.1.A1_at	B	B1S	POPTR_0745s00200	POPTR_0745s00200 (0:817)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86727.1.A1_at	B	B1S	POPTR_0007s10280	POPTR_0007s10280 (6:505)	NA	NA	O22193	U-box domain-containing protein 4	AT2G23140.1	RING/U-box superfamily protein with ARM repeat domain 	LOC_Os08g01900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.86728.1.S1_at	B	B1S	POPTR_0014s12560	POPTR_0014s12560 (4:507)	NA	NA	Q505J9	ATPase family AAA domain-containing protein 1	AT1G02890.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr1g108580.1	"Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central region; SMAD/FHA "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.86744.1.A1_at	B	B1S	POPTR_0002s00670	POPTR_0002s00670 (0:21)	scaffold_2:296710-297182(-) (11)	NA	Q4R7R1	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0006694|steroid biosynthetic process||GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity	NA
PtpAffx.86748.1.A1_at	B	B1S	POPTR_0005s23840	POPTR_0005s23840 (2:261)	NA	NA	Q5XEP9	3-ketoacyl-CoA synthase 17	AT1G04220.1	3-ketoacyl-CoA synthase 2 	LOC_Os02g11070.1	"3-ketoacyl-CoA synthase, putative, expressed"	AC233668_12.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase AC233668.2 25806-29562 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.86759.1.A1_at	B	B1S	POPTR_0011s02350	POPTR_0011s02350 (8:1381)	NA	NA	Q93V43	Transcription factor TCP2	AT4G18390.2	"TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 "	LOC_Os07g05720.1	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86769.1.A1_at	B	B1S	POPTR_0011s07381	POPTR_0011s07381 (5:205)	NA	NA	Q9LP46	Protein SCAR3	AT1G29170.3	SCAR family protein 	LOC_Os01g11040.1	"SCAR-like protein 2, putative, expressed"	Medtr4g134650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86794.1.A1_at	B	B1S	POPTR_0005s20140	POPTR_0005s20140 (6:1224)	NA	NA	Q42593	"L-ascorbate peroxidase T, chloroplastic"	AT1G77490.1	thylakoidal ascorbate peroxidase 	LOC_Os02g34810.1	"OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr3g100720.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.86795.1.A1_at	B	B1S	POPTR_0078s00200	POPTR_0078s00200 (6:284)	NA	NA	Q2MY58	Patatin group A-3	AT4G37060.1	PATATIN-like protein 5 	LOC_Os11g39990.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.86800.1.A1_at	B	B1S	POPTR_0002s12420	POPTR_0002s12420 (8:491)	NA	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.86802.1.A1_at	B	B1S	POPTR_0018s04910	POPTR_0018s04910 (1:208)	NA	NA	NA	NA	AT2G06005.1	FRIGIDA interacting protein 1 	LOC_Os02g53780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86812.1.A1_at	B	B1S	POPTR_0009s13690	POPTR_0009s13690 (6:522)	NA	NA	Q0VBD2	Protein MCM10 homolog	AT2G20980.1	minichromosome maintenance 10 	LOC_Os09g36820.1	"MCM10 - Putative minichromosome maintenance MCM protein 10, expressed"	Medtr3g163420.1	"Zinc finger, Mcm10/DnaG-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86865.1.A1_at	B	B1S	POPTR_0010s23930	POPTR_0010s23930 (5:534)	NA	NA	Q5HZ60	mRNA cap guanine-N7 methyltransferase 2	AT3G52210.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g54000.1	"mRNA cap guanine-N7 methyltransferase 2, putative, expressed"	Medtr3g124320.1	Methyltransferase type 12 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.86868.1.A1_at	B	B1S	POPTR_0006s11920	POPTR_0006s11920 (0:116)	NA	NA	NA	NA	AT2G36630.1	Sulfite exporter TauE/SafE family protein 	LOC_Os03g51650.1	"membrane protein, putative, expressed"	Medtr1g073760.1	"membrane protein-like protein, related "	NA	NA	GO:0016021|integral to membrane
PtpAffx.86908.1.S1_at	B	B1S	POPTR_0002s19990	POPTR_0002s19990 (8:195)	NA	NA	NA	NA	AT5G38700.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g19070.1	"long cell-linked locus protein, putative, expressed"	Medtr1g107490.1	"long cell-linked locus protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86948.1.S1_at	B	B3S	POPTR_0004s22990	POPTR_0004s22990 (4:362)//POPTR_0601s00200 (3:340)//POPTR_0433s00200 (3:246)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.86981.1.A1_at	B	B1S	POPTR_0004s21890	POPTR_0004s21890 (6:983)	scaffold_4:20862569-20863766(-) (11)	NA	Q9SZL7	Protein FAR1-RELATED SEQUENCE 9	AT4G38170.1	FAR1-related sequence 9 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr5g106890.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.87060.1.A1_at	B	B1S	POPTR_0007s10680	POPTR_0007s10680 (7:342)	NA	NA	Q8C2P3	tRNA-dihydrouridine synthase 1-like	AT5G67220.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os06g49870.1	"tRNA-dihydrouridine synthase, putative, expressed"	Medtr8g078600.1	"Dihydrouridine synthase, DuS "	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity	NA
PtpAffx.8712.1.A1_at	B	B1S	POPTR_0005s05340	POPTR_0005s05340 (7:539)	NA	NA	Q9USM7	Mitochondrial import inner membrane translocase subunit tim23	AT1G17530.1	translocase of inner mitochondrial membrane 23 	LOC_Os03g02390.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr1g096270.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.87145.1.A1_at	B	B1S	POPTR_0005s11100	POPTR_0005s11100 (7:198)	NA	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.87600.1.S1_at	B	B1S	POPTR_0006s18490	POPTR_0006s18490 (8:416)	scaffold_6:16958187-16958631(+) (9)//scaffold_6:16974980-16975422(+) (10)	NA	O24145	4-coumarate--CoA ligase 1	AT3G21240.1	4-coumarate:CoA ligase 2 	LOC_Os02g08100.1	"AMP-binding domain containing protein, expressed"	AC233655_1.1	AMP-dependent synthetase and ligase AC233655.2 29515-24780 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.87600.2.S1_at	B	B1S	POPTR_0018s10210	POPTR_0018s10210 (7:1082)	NA	NA	O24145	4-coumarate--CoA ligase 1	AT3G21240.1	4-coumarate:CoA ligase 2 	LOC_Os02g08100.1	"AMP-binding domain containing protein, expressed"	AC233655_1.1	AMP-dependent synthetase and ligase AC233655.2 29515-24780 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.87677.1.S1_at	B	B1S	POPTR_0002s01680	POPTR_0002s01680 (7:1649)	NA	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr1g143280.1	Tyrosine protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.877.1.A1_at	B	B1S	POPTR_0011s16990	POPTR_0011s16990 (7:291)	scaffold_11:18673013-18673396(+) (11)	NA	Q9FF99	Probable amino acid permease 7	AT5G23810.1	amino acid permease 7 	LOC_Os04g39489.1	"amino acid transporter, putative, expressed"	CU013523_1.1	"Amino acid transporter, transmembrane CU013523.3 15682-12598 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87717.1.S1_at	B	B1S	POPTR_0005s17800	POPTR_0005s17800 (4:440)	NA	NA	NA	NA	AT1G09740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g52314.1	"BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed"	Medtr5g075020.2	Universal stress protein (Usp) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87815.1.S1_at	B	B1S	POPTR_0014s02370	POPTR_0014s02370 (8:513)	NA	NA	Q9C626	F-box protein At1g47056	AT1G47056.1	VIER F-box proteine 1 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.87980.1.A1_at	B	B3S	POPTR_0395s00200	POPTR_0395s00200 (6:343)//POPTR_1619s00200 (5:336)//POPTR_0010s06010 (5:305)	NA	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88.1.S1_at	B	B1S	POPTR_0001s21450	POPTR_0001s21450 (8:416)	scaffold_1:19929644-19930137(-) (11)	NA	Q6NS23	tRNA guanosine-2'-O-methyltransferase TRM11 homolog	AT3G26410.1	methyltransferases;nucleic acid binding 	LOC_Os02g35060.1	"RNA methyltransferase protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8810.1.S1_at	B	B1S	POPTR_0002s08610	POPTR_0002s08610 (7:424)	scaffold_2:6024095-6024605(+) (10)	NA	Q9SFE4	Ethylene-responsive transcription factor ERF012	AT1G21910.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g10780.1	"AP2 domain containing protein, expressed"	Medtr5g065700.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.88136.1.A1_at	B	B1S	POPTR_0013s14570	POPTR_0013s14570 (7:463)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g103140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8817.1.S1_at	B	B1S	POPTR_0003s12420	POPTR_0003s12420 (6:318)	NA	NA	Q9C8S9	Probable DEAD-box ATP-dependent RNA helicase 48	AT1G63250.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os02g57980.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.88189.1.A1_at	B	B1S	POPTR_0002s25870	POPTR_0002s25870 (4:246)	NA	NA	NA	NA	AT1G04530.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04710.2	expressed protein	Medtr7g117700.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88240.1.A1_at	B	B1S	POPTR_0009s03990	POPTR_0009s03990 (7:357)	scaffold_9:4567092-4567545(+) (10)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT3G46640.2	Homeodomain-like superfamily protein 	LOC_Os01g74020.1	"MYB family transcription factor, putative, expressed"	Medtr4g084700.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88259.1.A1_at	B	B1S	POPTR_0005s25950	POPTR_0005s25950 (1:490)	NA	NA	NA	NA	AT1G75710.1	C2H2-like zinc finger protein 	LOC_Os04g59380.1	"ZOS4-14 - C2H2 zinc finger protein, expressed"	Medtr1g030900.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88270.1.A1_at	B	B1S	POPTR_0006s12380	POPTR_0006s12380 (8:933)	NA	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT1G08080.1	alpha carbonic anhydrase 7 	LOC_Os08g36630.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88399.1.A1_at	B	B1S	POPTR_0002s03070	POPTR_0002s03070 (6:320)	scaffold_2:1909278-1909710(-) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.88408.1.A1_at	B	B1S	POPTR_0010s04280	POPTR_0010s04280 (2:109)	scaffold_10:5292270-5293548(-) (10)	NA	NA	NA	AT3G17900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g05812.1	expressed protein	Medtr5g039480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88412.1.A1_at	B	B1S	POPTR_0006s20530	POPTR_0006s20530 (8:480)	NA	NA	O14979	Heterogeneous nuclear ribonucleoprotein D-like	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g16090.1	"RNA binding protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.88416.1.A1_at	B	B3A	POPTR_0010s06050	POPTR_0010s06060 (7:272)//POPTR_0010s06050 (7:272)//POPTR_0010s06010 (5:272)	NA	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88561.2.A1_at	B	B1S	POPTR_0001s02840	POPTR_0001s02840 (0:578)	NA	NA	NA	NA	AT1G32370.2	tobamovirus multiplication 2B 	LOC_Os02g17850.1	"TOM2B, putative, expressed"	Medtr2g082950.1	"TOM2B, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88563.1.A1_at	B	B1S	POPTR_0014s10930	POPTR_0014s10930 (8:165)	NA	NA	Q2RWE1	Peptide chain release factor 1	AT2G47020.1	Peptide chain release factor 1 	LOC_Os05g19630.2	"peptide chain release factor protein, putative, expressed"	Medtr7g133970.1	Peptide chain release factor 1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
PtpAffx.88608.1.A1_at	B	B1S	POPTR_0001s41180	POPTR_0001s41180 (7:403)	scaffold_1:40828196-40828695(-) (11)	NA	O94111	"Dynein light chain, cytoplasmic"	AT1G23220.1	Dynein light chain type 1 family protein 	LOC_Os04g38880.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr8g119810.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
PtpAffx.88620.1.A1_at	B	B1S	POPTR_0005s19400	POPTR_0005s19400 (0:224)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88652.1.A1_at	B	B1S	POPTR_0013s10480	POPTR_0013s10480 (2:32)	scaffold_13:10766309-10766534(-) (11)	NA	Q3U0V1	Far upstream element-binding protein 2	AT4G10070.1	KH domain-containing protein 	LOC_Os08g01930.1	"KH domain-containing protein, putative, expressed"	Medtr5g008480.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.88659.1.A1_at	B	B1S	POPTR_0007s00420	POPTR_0007s00420 (1:989)	scaffold_7:150514-152162(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88672.1.A1_at	B	B1S	POPTR_0016s10900	POPTR_0016s10900 (5:93)	scaffold_16:9264109-9264340(+) (11)	NA	NA	NA	AT2G36720.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g01170.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88771.1.A1_at	B	B1S	POPTR_0013s13570	POPTR_0013s13570 (5:313)	scaffold_13:14006955-14007473(+) (10)	NA	Q9XGS0	"Thioredoxin M-type, chloroplastic"	AT3G15360.1	thioredoxin M-type 4 	LOC_Os04g44830.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.88773.1.A1_at	B	B1S	POPTR_0007s07040	POPTR_0007s07040 (7:370)	NA	NA	Q9FPS0	Ubiquitin carboxyl-terminal hydrolase 27	AT4G39370.3	ubiquitin-specific protease 27 	LOC_Os04g34984.3	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr4g141410.1	"Ubiquitin carboxyl-terminal hydrolase 27, related "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.88819.1.A1_at	B	B1S	POPTR_0006s25550	POPTR_0006s25550 (6:505)	scaffold_6:23938149-23938790(+) (10)	NA	Q9NQT4	Exosome complex exonuclease RRP46	AT3G46210.6	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os03g63720.1	"exosome complex exonuclease, putative, expressed"	Medtr7g084770.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.88894.1.A1_at	B	B1S	POPTR_0008s04010	POPTR_0008s04010 (6:1514)	NA	NA	Q9SP55	V-type proton ATPase subunit G	AT3G01390.2	vacuolar membrane ATPase 10 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
PtpAffx.88905.1.A1_at	B	B2S	POPTR_0004s06190	POPTR_1064s00200 (0:136)//POPTR_0004s06190 (0:136)	NA	NA	P51418	60S ribosomal protein L18a-2	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.88921.1.A1_at	B	B1S	POPTR_0016s08760	POPTR_0016s08760 (1:208)	NA	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88938.1.A1_at	B	B1S	POPTR_0010s09260	POPTR_0010s09260 (6:211)	scaffold_10:10128482-10128902(-) (10)	NA	NA	NA	AT4G14746.1	CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os03g06580.2	"MTN26L2 - MtN26 family protein precursor, expressed"	Medtr7g140750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88948.1.S1_at	B	B1S	POPTR_0001s17560	POPTR_0001s17560 (8:521)	NA	NA	NA	NA	AT1G52780.1	Protein of unknown function (DUF2921) 	LOC_Os01g08170.1	expressed protein	Medtr2g017240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88965.1.A1_at	B	B1S	POPTR_0014s15840	POPTR_0014s15840 (7:632)	scaffold_14:11931099-11934059(-) (10)	NA	Q67ZI9	GDSL esterase/lipase At2g42990	AT2G42990.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g04710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g092070.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.88983.3.A1_a_at	B	B1S	POPTR_0003s03050	POPTR_0003s03050 (0:958)	scaffold_3:3381067-3385925(+) (10)	NA	NA	NA	AT1G55140.1	Ribonuclease III family protein 	LOC_Os11g13420.3	"RNA binding protein, putative, expressed"	Medtr2g121420.1	Ribonuclease III 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88987.1.A1_at	B	B2S	POPTR_0017s14210	POPTR_0017s14210 (8:774)//POPTR_0824s00200 (4:47)	NA	NA	NA	NA	AT1G67170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). 	LOC_Os02g09890.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g121450.1	"Protein kinase PKN/PRK1, effector, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89015.1.A1_at	B	B1S	POPTR_0001s09360	POPTR_0001s09360 (5:269)	scaffold_1:7149287-7149743(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89023.2.S1_a_at	B	B1A	POPTR_0396s00210	POPTR_0396s00210 (8:222)	NA	NA	P52837	Flavonol 4'-sulfotransferase	AT2G27570.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g04300.1	sulfotransferase domain containing protein	Medtr8g077530.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.89041.1.A1_at	B	B1S	POPTR_0001s41960	POPTR_0001s41960 (5:295)	scaffold_1:41726864-41727309(+) (11)	NA	NA	NA	AT5G54430.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g57450.1	"universal stress protein domain containing protein, putative, expressed"	Medtr2g103170.1	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.891.10.S1_at	B	B1S	POPTR_0003s09160	POPTR_0003s09160 (8:280)	NA	NA	NA	NA	AT4G17900.1	PLATZ transcription factor family protein 	LOC_Os04g50120.1	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.891.16.A1_at	B	B1S	POPTR_1455s00210	POPTR_1455s00210 (8:68)	scaffold_1455:4718-4827(-) (11)	NA	Q9ZPN9	Tubulin beta-2 chain	AT2G29550.1	tubulin beta-7 chain 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.89123.1.A1_at	B	B1S	POPTR_0012s01430	POPTR_0012s01430 (7:340)	NA	NA	P26683	RNA polymerase sigma factor rpoD	AT5G24120.1	sigma factor E 	LOC_Os05g50930.1	"RNA polymerase sigma factor, putative, expressed"	Medtr3g124610.1	Sigma-70 region 2; Winged helix repressor DNA-binding; ; 	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.89196.1.A1_at	B	B3S	POPTR_0009s08670	POPTR_0473s00200 (3:274)//POPTR_0009s08670 (3:274)//POPTR_0473s00220 (0:192)	NA	NA	P33154	Pathogenesis-related protein 1	AT4G33720.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr2g010660.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8920.1.S1_at	B	B4A	POPTR_0001s38360	POPTR_0001s38400 (7:437)//POPTR_0001s38360 (7:391)//POPTR_0001s38380 (7:390)//POPTR_0001s38370 (7:390)	NA	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os06g06130.1	"glutamate receptor, putative"	Medtr2g018650.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.89209.1.A1_at	B	B1S	POPTR_0010s02760	POPTR_0010s02760 (0:292)	NA	NA	O24467	LEC14B homolog	AT4G03020.2	transducin family protein / WD-40 repeat family protein 	LOC_Os05g33710.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g025800.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89247.1.A1_at	B	B1A	POPTR_0007s01080	POPTR_0007s01080 (8:196)	NA	NA	Q9ZWA1	Zinc finger CCCH domain-containing protein 2	AT1G03790.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g09620.2	"zinc finger/CCCH transcription factor, putative, expressed"	Medtr4g108400.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.89256.1.A1_at	B	B1S	POPTR_0001s22820	POPTR_0001s22820 (8:267)	NA	NA	A7RWD2	Probable cytosolic iron-sulfur protein assembly protein	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89264.1.A1_at	B	B1S	POPTR_0019s05630	POPTR_0019s05630 (7:123)	NA	NA	Q5EA98	Microfibrillar-associated protein 1	AT5G17900.1	microfibrillar-associated protein-related 	LOC_Os02g17870.1	"microfibrillar-associated protein 1, putative, expressed"	Medtr4g132710.1	"Micro-fibrillar-associated 1, C-terminal "	NA	NA	GO:0005576|extracellular region
PtpAffx.89292.1.A1_at	B	B1S	POPTR_0012s04420	POPTR_0012s04420 (0:1166)	scaffold_12:3638568-3642418(+) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89302.1.A1_at	B	B1S	POPTR_0003s07580	POPTR_0003s07580 (4:387)	scaffold_3:9138467-9139138(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89327.2.A1_at	B	B1S	POPTR_0015s06010	POPTR_0015s06010 (1:77)	NA	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.89329.1.A1_at	B	B1S	POPTR_0009s01780	POPTR_0009s01780 (6:293)	NA	NA	Q9SCV4	Beta-galactosidase 8	AT2G28470.1	beta-galactosidase 8 	LOC_Os03g15020.1	"beta-galactosidase precursor, putative, expressed"	Medtr4g081500.1	"Rhodopsin-like GPCR superfamily; D-galactoside/L-rhamnose binding SUEL lectin; Glycoside hydrolase, family 35 "	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.8933.2.A1_at	B	B1S	POPTR_0004s20000	POPTR_0004s20000 (6:215)	NA	NA	Q56XJ7	Uncharacterized protein At4g22760	AT2G27830.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g32580.1	expressed protein	Medtr4g073410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89352.1.A1_at	B	B1S	POPTR_0003s08980	POPTR_0003s08980 (0:1670)	NA	NA	P54638	Acetylornithine deacetylase	AT4G17830.1	Peptidase M20/M25/M40 family protein 	LOC_Os02g46520.1	"hydrolase, putative, expressed"	Medtr5g014590.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.89364.1.A1_at	B	B1S	POPTR_0006s13560	POPTR_0006s13560 (0:238)	NA	NA	Q9LQQ8	Probable serine/threonine-protein kinase RLCKVII	AT5G02800.1	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g120700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.89588.1.S1_at	B	B1S	POPTR_0005s07650	POPTR_0005s07650 (8:450)	NA	NA	NA	NA	AT1G61730.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os09g27850.1	"transcription regulator, putative, expressed"	Medtr1g096530.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8961.1.S1_at	B	B1S	POPTR_0003s08700	POPTR_0003s08700 (8:1363)	NA	NA	Q40546	"Pyruvate kinase isozyme G, chloroplastic"	AT1G32440.1	plastidial pyruvate kinase 3 	LOC_Os10g42100.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.89849.1.S1_at	B	B1S	POPTR_0012s01540	POPTR_0012s01540 (5:255)	NA	NA	Q9FGM0	"ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial"	AT5G53170.1	FTSH protease 11 	LOC_Os01g43150.1	"OsFtsH9  FtsH protease, homologue of AtFtsH11, expressed"	Medtr3g139890.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.8990.2.A1_at	B	B1S	POPTR_0014s17640	POPTR_0014s17640 (6:460)	NA	NA	Q6C8M8	Sterol 3-beta-glucosyltransferase	AT3G07020.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g04254.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr4g023830.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.89950.1.S1_at	B	B1S	POPTR_0008s14650	POPTR_0008s14650 (1:608)	NA	NA	Q9ZTR1	Spermidine synthase 1	AT1G70310.1	spermidine synthase 2 	LOC_Os07g22600.1	"spermidine synthase, putative, expressed"	Medtr5g035800.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.89966.1.S1_a_at	B	B1S	POPTR_0016s10280	POPTR_0016s10280 (7:198)	scaffold_16:8485047-8485322(-) (11)	NA	NA	NA	AT2G37860.3	Protein of unknown function (DUF3411) 	LOC_Os04g44290.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90122.1.S1_at	B	B1S	POPTR_0014s03230	POPTR_0014s03230 (6:494)	NA	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g37060.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr3g148100.1	Alpha/beta hydrolase fold-3 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.90235.1.S1_at	B	B1S	POPTR_0001s42730	POPTR_0001s42730 (8:1939)	NA	NA	Q8W4Z5	UPF0497 membrane protein f16	AT1G17200.1	Uncharacterised protein family (UPF0497) 	LOC_Os04g21320.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr5g084410.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.903.3.A1_a_at	B	B1S	POPTR_0004s14160	POPTR_0004s14160 (3:841)	scaffold_4:14651771-14655342(-) (11)	NA	NA	NA	AT1G04290.1	Thioesterase superfamily protein 	LOC_Os01g65950.1	"thioesterase family protein, putative, expressed"	Medtr3g151860.1	Phenylacetic acid degradation-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.903.4.S1_at	B	B1S	POPTR_0004s14170	POPTR_0004s14170 (8:335)	NA	NA	Q5R833	Acyl-coenzyme A thioesterase 13	AT1G04290.1	Thioesterase superfamily protein 	LOC_Os01g65950.1	"thioesterase family protein, putative, expressed"	Medtr3g151860.1	Phenylacetic acid degradation-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90384.1.S1_at	B	B1S	POPTR_0003s08870	POPTR_0003s08870 (8:638)	NA	NA	Q96RT1	Protein LAP2	AT4G35470.1	plant intracellular ras group-related LRR 4 	LOC_Os10g42190.2	"leucine rich repeat containing protein, expressed"	Medtr8g102800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.90441.1.S1_at	B	B1S	POPTR_0014s05240	POPTR_0014s05240 (6:394)	NA	NA	Q67YI6	RING-H2 finger protein ATL65	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90506.1.A1_at	B	B1S	POPTR_0010s21900	POPTR_0010s21900 (7:462)	NA	NA	Q99685	Monoglyceride lipase	AT2G39420.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g16180.1	"lipase, putative, expressed"	Medtr1g108370.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90533.1.S1_at	B	B1S	POPTR_0014s11020	POPTR_0014s11020 (8:516)	NA	NA	Q76PD2	LIM domain and RING finger protein C1223.01	AT3G62240.1	RING/U-box superfamily protein 	LOC_Os05g19970.1	"ZOS5-06 - C2H2 zinc finger protein, expressed"	Medtr7g133640.1	"Zinc finger, RING-type; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90535.1.S1_at	B	B1S	POPTR_0006s01320	POPTR_0006s01320 (8:452)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90549.1.S1_at	B	B2S	POPTR_0009s07740	POPTR_0009s07740 (6:403)//POPTR_0001s28540 (0:397)	NA	NA	Q68FD5	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os11g01380.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
PtpAffx.90560.1.S1_at	B	B1S	POPTR_0002s02190	POPTR_0002s02190 (8:154)	NA	NA	P50699	Thaumatin-like protein	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90645.4.A1_at	B	B2S	POPTR_0006s00420	POPTR_0016s00460 (0:401)//POPTR_0006s00420 (8:384)	scaffold_6:191135-191557(+) (9)	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT4G17180.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os09g09980.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr2g033140.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.90648.1.A1_at	B	B1S	POPTR_0006s07620	POPTR_0006s07620 (8:469)	NA	NA	NA	NA	AT2G19160.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g45110.1	"DNA binding protein, putative, expressed"	Medtr8g129570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.90682.1.A1_at	B	B3S	POPTR_0001s43670	POPTR_0049s00200 (3:506)//POPTR_0001s43670 (4:386)//POPTR_0001s42630 (1:286)	NA	NA	Q147X3	"N-alpha-acetyltransferase 30, NatC catalytic subunit"	AT2G38130.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os11g32280.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g097190.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.90699.1.A1_at	B	B1S	POPTR_0008s20240	POPTR_0008s20240 (4:255)	NA	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G18910.1	Protein kinase superfamily protein 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr1g098870.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90748.1.S1_at	B	B1S	POPTR_0017s08660	POPTR_0017s08660 (8:818)	NA	NA	NA	NA	AT4G14010.1	ralf-like 32 	NA	NA	Medtr4g132720.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90771.1.A1_at	B	B1S	POPTR_0012s02570	POPTR_0012s02570 (7:374)	NA	NA	Q8LAP8	Dof zinc finger protein DOF4.6	AT4G24060.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os04g47990.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.908.1.S1_at	B	B1S	POPTR_0009s08640	POPTR_0009s08640 (7:404)	scaffold_9:7844519-7844945(+) (9)	NA	P11670	Basic form of pathogenesis-related protein 1	AT4G33720.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr2g010630.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90811.2.A1_at	B	B2S	POPTR_0017s05250	POPTR_0048s00260 (0:225)//POPTR_0017s05250 (0:200)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90826.1.S1_at	B	B1S	POPTR_0009s03750	POPTR_0009s03750 (7:356)	NA	NA	Q8GYC7	"PGR5-like protein 1B, chloroplastic"	AT5G59400.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g02010.1	expressed protein	Medtr2g116720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90854.1.A1_at	B	B1S	POPTR_0010s05870	POPTR_0010s05870 (0:8)	NA	NA	NA	NA	AT1G13030.1	sphere organelles protein-related 	LOC_Os12g19040.1	expressed protein	Medtr3g102490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90856.1.A1_at	B	B1S	POPTR_0002s17990	POPTR_0002s17990 (1:95)	NA	NA	Q9H0Z9	RNA-binding protein 38	AT2G46780.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	CU179634_3.1	RNA-binding region RNP-1 (RNA recognition motif) CU179634.6 7913-3383 H EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.90898.1.S1_at	B	B1S	POPTR_0016s06740	POPTR_0016s06740 (8:480)	NA	NA	A6U864	50S ribosomal protein L22	AT4G28360.1	Ribosomal protein L22p/L17e family protein 	LOC_Os01g42980.1	"ribosomal protein L22, putative, expressed"	Medtr1g047330.1	Ribosomal protein L22/L17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.91178.1.S1_at	B	B1S	POPTR_0001s35610	POPTR_0001s35610 (5:1267)	scaffold_1:33949776-33953356(+) (10)	NA	NA	NA	AT3G27460.1	SGF29 tudor-like domain 	LOC_Os12g19350.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9122.2.A1_at	B	B1S	POPTR_0006s13880	POPTR_0006s13880 (3:990)	scaffold_6:11054454-11055706(-) (11)	NA	Q9SZA3	Eukaryotic translation initiation factor 3 subunit K	AT4G33250.1	eukaryotic translation initiation factor 3K 	LOC_Os03g08450.1	"eukaryotic translation initiation factor 3 subunit K, putative, expressed"	Medtr8g133200.1	SAC3/GANP; Eukaryotic translation initiation factor 3 subunit 12; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9131.2.S1_at	B	B1S	POPTR_0017s08280	POPTR_0017s08280 (5:831)	scaffold_17:6753623-6756910(+) (9)	NA	O65399	"Glucan endo-1,3-beta-glucosidase 1"	AT4G13600.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os02g29980.1	"X8 domain containing protein, expressed"	Medtr4g133690.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9139.1.S1_at	B	B1S	POPTR_0007s03140	POPTR_0007s03140 (6:430)	NA	NA	Q6AVK1	UPF0727 protein	AT4G33640.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g48390.1	expressed protein	Medtr2g009700.1	"Uncharacterized protein C6orf115, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9140.1.A1_at	B	B1S	POPTR_0003s12690	POPTR_0003s12690 (5:221)	scaffold_3:13201960-13202313(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g149480.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.91442.1.S1_at	B	B1S	POPTR_0005s22730	POPTR_0005s22730 (5:1068)	NA	NA	NA	NA	AT1G06660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g56590.1	expressed protein	Medtr5g098090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91475.1.S1_at	B	B2S	POPTR_0004s04050	POPTR_0004s04050 (8:531)//POPTR_0004s04040 (7:497)	NA	NA	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91542.1.S1_at	B	B1S	POPTR_0002s06050	POPTR_0002s06050 (8:1588)	NA	NA	O65399	"Glucan endo-1,3-beta-glucosidase 1"	AT2G30933.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os05g50490.2	"X8 domain containing protein, expressed"	Medtr5g098920.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9156.2.S1_at	B	B1S	POPTR_0001s10680	POPTR_0001s10680 (7:395)	NA	NA	NA	NA	AT4G10970.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g28690.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9156.4.S1_at	B	B1S	POPTR_0003s14060	POPTR_0003s14060 (5:695)	NA	NA	NA	NA	AT4G10970.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g28690.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91581.1.S1_at	B	B1S	POPTR_0019s05140	POPTR_0019s05140 (7:2958)	NA	NA	O49044	Superoxide dismutase [Cu-Zn] 2	AT5G18100.1	copper/zinc superoxide dismutase 3 	LOC_Os03g11960.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr6g031060.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
PtpAffx.91653.1.S1_at	B	B1S	POPTR_0006s21580	POPTR_0006s21580 (7:426)	NA	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9177.1.S1_at	B	B1S	POPTR_0013s10540	POPTR_0013s10540 (8:562)	NA	NA	Q8RX37	Probable protein phosphatase 2C 2	AT1G07160.1	Protein phosphatase 2C family protein 	LOC_Os12g09640.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91785.1.S1_at	B	B1S	POPTR_0001s41610	POPTR_0001s41610 (8:343)	scaffold_1:41318526-41319057(+) (11)	NA	NA	NA	AT1G52855.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g37700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91816.1.S1_at	B	B1S	POPTR_0011s09820	POPTR_0011s09820 (3:445)	NA	NA	Q759M1	Protein SIP5	AT1G78420.2	RING/U-box superfamily protein 	LOC_Os02g14720.1	expressed protein	Medtr7g032000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91859.1.S1_at	B	B1S	POPTR_0005s19090	POPTR_0005s19090 (8:490)	NA	NA	Q9M8M3	"Pentatricopeptide repeat-containing protein At1g80550, mitochondrial"	AT1G80550.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g55090.2	"PPR repeat domain containing protein, putative, expressed"	Medtr2g127200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9188.1.A1_at	B	B1S	POPTR_0001s01040	POPTR_0001s01040 (8:199)	NA	NA	NA	NA	AT5G45275.1	Major facilitator superfamily protein 	LOC_Os11g01590.1	"nodulin, putative, expressed"	Medtr5g026470.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9190.1.S1_s_at	B	B1S	POPTR_0008s08610	POPTR_0008s08610 (8:145)	NA	NA	P47082	Vacuolar amino acid transporter 1	AT3G28960.1	Transmembrane amino acid transporter family protein 	LOC_Os04g38680.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g010030.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91938.1.S1_at	B	B1S	POPTR_0008s06190	POPTR_0008s06190 (8:508)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g070900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91976.1.S1_at	B	B1S	POPTR_0006s00430	POPTR_0006s00430 (6:459)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.91999.1.S1_at	B	B1A	POPTR_0014s06700	POPTR_0014s06700 (7:529)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92002.1.S1_at	B	B1S	POPTR_0010s15610	POPTR_0010s15610 (7:395)	NA	NA	Q05609	Serine/threonine-protein kinase CTR1	AT3G06620.1	PAS domain-containing protein tyrosine kinase family protein 	LOC_Os12g37570.1	"protein kinase family protein, putative, expressed"	Medtr8g137470.1	PAS; Tyrosine protein kinase 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.92021.1.S1_at	B	B1S	POPTR_0001s07150	POPTR_0001s07150 (3:272)	NA	NA	Q8UVK2	Transcription elongation factor SPT6	AT1G65440.1	global transcription factor group B1 	LOC_Os05g41510.1	"SH2 motif, putative, expressed"	AC233661_16.1	"Zinc finger, CCHC-type; RNA binding S1 AC233661.2 92271-86017 E EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.92023.1.S1_at	B	B1S	POPTR_0005s20620	POPTR_0005s20620 (8:328)	NA	NA	Q6PDK2	Histone-lysine N-methyltransferase MLL2	AT1G77250.1	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os08g01420.1	"PHD-finger domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9205.1.S1_at	B	B1S	POPTR_0002s24850	POPTR_0002s24850 (7:462)	NA	NA	Q94465	GTP cyclohydrolase 1	AT3G07270.1	GTP cyclohydrolase I 	LOC_Os04g56710.1	"GTP cyclohydrolase I 1, putative, expressed"	Medtr7g062120.1	GTP cyclohydrolase I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92099.1.A1_at	B	B1S	POPTR_0008s07360	POPTR_0008s07360 (0:18)	NA	NA	Q8LFR2	Dehydration-responsive element-binding protein 2C	AT2G40340.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g07120.2	"AP2 domain containing protein, expressed"	Medtr5g090850.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.92099.2.S1_at	B	B1S	POPTR_0008s07360	POPTR_0008s07360 (0:383)	NA	NA	Q8LFR2	Dehydration-responsive element-binding protein 2C	AT2G40340.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g07120.2	"AP2 domain containing protein, expressed"	Medtr5g090850.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.92132.1.A1_at	B	B1A	POPTR_0003s01130	POPTR_0003s01130 (8:481)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.9218.1.S1_at	B	B3S	POPTR_0001s03210	POPTR_0001s03210 (8:491)//POPTR_0001s07540 (8:481)//POPTR_0001s03190 (4:367)	NA	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT1G16130.1	wall associated kinase-like 2 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.9223.1.S1_at	B	B1S	POPTR_0011s16140	POPTR_0011s16140 (4:173)	NA	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44390.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.92306.1.S1_at	B	B1S	POPTR_0001s10070	POPTR_0001s10070 (6:1371)	NA	NA	Q42479	Calcium-dependent protein kinase 3	AT4G23650.1	calcium-dependent protein kinase 6 	LOC_Os01g43410.1	"CAMK_CAMK_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g009940.1	Protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.92350.1.S1_at	B	B2S	POPTR_0002s22130	POPTR_0002s22130 (5:410)//POPTR_0280s00200 (0:248)	NA	NA	O81263	Thymidine kinase	AT3G07800.1	Thymidine kinase 	LOC_Os03g02200.2	"thymidine kinase, putative, expressed"	Medtr3g106020.1	Thymidine kinase 	NA	GO:0004797|thymidine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.92359.1.S1_at	B	B1S	POPTR_0006s01150	POPTR_0006s01150 (1:375)	NA	NA	Q40285	Anthocyanidin 3-O-glucosyltransferase 2 (Fragment)	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g32060.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr5g078570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92409.1.S1_at	B	B1S	POPTR_0010s11760	POPTR_0010s11760 (2:186)	NA	NA	Q9ZU95	"Nudix hydrolase 17, mitochondrial"	AT2G01670.1	nudix hydrolase homolog 17 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g157270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.92461.1.A1_at	B	B1S	POPTR_0016s03940	POPTR_0016s03940 (6:461)	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os05g15230.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093460.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92547.1.A1_at	B	B1S	POPTR_0002s16390	POPTR_0002s16390 (0:137)	NA	NA	A7PZL3	Probable polygalacturonase	AT3G61490.3	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.92644.1.S1_at	B	B1S	POPTR_0001s28790	POPTR_0001s28790 (7:301)	NA	NA	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os03g18454.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed"	Medtr3g034410.1	"Gamma-interferon-inducible lysosomal thiol reductase precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92648.1.S1_at	B	B1S	POPTR_0016s00850	POPTR_0016s00850 (7:684)	NA	NA	NA	NA	AT4G16380.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os07g41600.1	"proline-rich protein, putative, expressed"	Medtr8g148830.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.92653.1.S1_at	B	B1S	POPTR_0008s03250	POPTR_0008s03250 (8:960)	NA	NA	Q4QSC8	Shugoshin-1	AT5G04320.2	Shugoshin C terminus 	LOC_Os02g55570.1	"shugoshin-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92673.1.S1_at	B	B1S	POPTR_0014s08530	POPTR_0014s08530 (8:1608)	NA	NA	Q9Z2F5	C-terminal-binding protein 1	AT1G01510.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g38900.1	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr7g088700.1	"D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0048037|cofactor binding"	NA
PtpAffx.92678.3.S1_at	B	B1S	POPTR_0005s26870	POPTR_0005s26870 (1:887)	NA	NA	P48147	Prolyl endopeptidase	AT1G76140.1	Prolyl oligopeptidase family protein 	LOC_Os01g01830.1	"OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.92682.1.S1_at	B	B1S	POPTR_0017s12590	POPTR_0017s12590 (8:2715)	NA	NA	NA	NA	AT3G01060.1	unknown protein; Has 640 Blast hits to 638 proteins in 201 species: Archae - 0; Bacteria - 293; Metazoa - 0; Fungi - 71; Plants - 72; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). 	LOC_Os05g43650.1	expressed protein	Medtr6g013900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9269.1.S1_at	B	B1S	POPTR_0002s06350	POPTR_0002s06350 (6:525)	scaffold_2:4229885-4230528(-) (10)	NA	NA	NA	AT1G71760.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 84 Blast hits to 84 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os01g51850.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92714.1.S1_at	B	B1S	POPTR_0012s12440	POPTR_0012s12440 (3:125)	NA	NA	Q9SHY8	Pre-mRNA-splicing factor SLU7-A	AT1G65660.1	Pre-mRNA splicing Prp18-interacting factor 	LOC_Os08g03390.1	"pre-mRNA-splicing factor SLU7, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92754.1.S1_at	B	B1S	POPTR_0012s13980	POPTR_0012s13980 (8:1345)	NA	NA	O64645	MADS-box protein SOC1	AT5G62165.3	AGAMOUS-like 42 	LOC_Os10g39130.1	"OsMADS56 - MADS-box family gene with MIKCc type-box, expressed"	Medtr7g014840.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.9290.2.A1_at	B	B1S	POPTR_0007s06930	POPTR_0007s06930 (7:401)	NA	NA	Q9SVB7	Probable WRKY transcription factor 13	AT4G39410.1	WRKY DNA-binding protein 13 	LOC_Os01g08710.1	"OsWRKY79 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g144590.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.92919.1.S1_at	B	B1S	POPTR_0010s06260	POPTR_0010s06260 (8:902)	NA	NA	NA	NA	AT1G24440.1	RING/U-box superfamily protein 	LOC_Os07g17400.2	"zinc finger, RING-type, putative, expressed"	Medtr3g102930.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92986.1.S1_at	B	B1S	POPTR_0004s09140	POPTR_0004s09140 (8:104)	NA	NA	Q9UKZ1	UPF0760 protein C2orf29	AT5G18420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g13694.1	"AGAP007117-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92991.1.S1_at	B	B1S	POPTR_0005s07220	POPTR_0005s07220 (7:508)	NA	NA	Q9LX93	E3 ubiquitin-protein ligase RING1	AT5G10380.1	RING/U-box superfamily protein 	LOC_Os04g37740.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g120960.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93015.1.S1_at	B	B1A	POPTR_0003s12020	POPTR_0003s12020 (3:287)	scaffold_3:12702373-12702876(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93051.1.S1_at	B	B1S	POPTR_0006s25090	POPTR_0006s25090 (0:127)	NA	NA	P26683	RNA polymerase sigma factor rpoD	AT3G53920.1	RNApolymerase sigma-subunit C 	LOC_Os05g51150.1	"RNA polymerase sigma factor, putative, expressed"	Medtr1g008400.1	"Sigma factor, ECF; Peptidase S1 and S6, chymotrypsin/Hap; Winged helix repressor DNA-binding; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.93077.1.S1_at	B	B1S	POPTR_0001s01090	POPTR_0001s01090 (6:203)	NA	NA	Q9ZPR1	Cell division control protein 48 homolog B	AT2G03670.1	cell division cycle 48B 	LOC_Os04g42110.1	"cell division control protein 48 homolog B, putative, expressed"	Medtr7g105950.2	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.93078.1.S1_at	B	B1S	POPTR_0005s15490	POPTR_0005s15490 (0:9)	scaffold_5:12145124-12145280(-) (10)	NA	NA	NA	AT1G67040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04160.1	expressed protein	Medtr7g093380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93086.1.S1_at	B	B1S	POPTR_0018s11830	POPTR_0018s11830 (4:75)	NA	NA	A5GFW7	UPF0549 protein C20orf43 homolog	AT5G58020.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os06g08490.1	"X0001, putative, expressed"	Medtr8g145760.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93089.1.S1_at	B	B1S	POPTR_0005s27130	POPTR_0005s27130 (6:376)	NA	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G76270.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr5g106640.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93124.1.S1_at	B	B1S	POPTR_0001s29740	POPTR_0001s29740 (8:958)	NA	NA	P54461	Ribosomal RNA small subunit methyltransferase E	AT1G50000.1	methyltransferases 	LOC_Os03g51984.1	"differentiation protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity	NA
PtpAffx.93132.1.S1_at	B	B1S	POPTR_0013s05860	POPTR_0013s05860 (0:533)	NA	NA	P16157	Ankyrin-1	AT5G13530.2	protein kinases;ubiquitin-protein ligases 	LOC_Os03g45290.1	"ankyrin repeat domain-containing protein 50, putative, expressed"	Medtr1g110930.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.93137.1.S1_at	B	B1A	POPTR_0010s23310	POPTR_0010s23310 (5:260)	NA	NA	P31583	Ras-related protein RHN1	AT3G54840.1	Ras-related small GTP-binding family protein 	LOC_Os10g30520.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.93160.1.S1_at	B	B1S	POPTR_0005s24770	POPTR_0005s24770 (8:302)	NA	NA	NA	NA	AT2G20495.1	CONTAINS InterPro DOMAIN/s: Serine-threonine protein kinase 19 (InterPro:IPR018865); Has 155 Blast hits to 154 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 5; Plants - 34; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os07g27460.2	"serine/threonine-protein kinase 19, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93161.1.S1_at	B	B1S	POPTR_0005s08880	POPTR_0005s08880 (8:510)	NA	NA	Q8L899	Systemin receptor SR160	AT4G39400.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os01g52050.1	"systemin receptor SR160 precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.93169.1.S1_at	B	B1S	POPTR_0019s07970	POPTR_0019s07970 (6:175)	NA	NA	NA	NA	AT1G50240.2	Protein kinase family protein with ARM repeat domain 	LOC_Os12g24550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93171.1.S1_at	B	B1S	POPTR_0017s11670	POPTR_0017s11670 (7:575)	NA	NA	Q2NI00	3-dehydroquinate synthase	AT3G28760.2	"CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os03g07420.1	"3-dehydroquinate synthase, putative, expressed"	Medtr1g047300.1	3-Dehydroquinate synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93186.1.S1_at	B	B1S	POPTR_0004s03710	POPTR_0004s03710 (6:378)	NA	NA	NA	NA	AT1G61215.1	bromodomain 4 	LOC_Os07g37800.1	"bromodomain domain containing protein, expressed"	Medtr2g014300.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93242.1.A1_at	B	B1S	POPTR_0006s28990	POPTR_0006s28990 (3:399)	NA	NA	Q03194	Plasma membrane ATPase 4	AT2G24520.1	H(+)-ATPase 5 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.93266.1.A1_at	B	B1S	POPTR_0005s08250	POPTR_0005s08250 (0:1492)	NA	NA	O49884	60S ribosomal protein L30	AT1G77940.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93271.1.S1_at	B	B2S	POPTR_0013s06810	POPTR_0013s06810 (7:410)//POPTR_0013s06820 (3:192)	scaffold_13:5496571-5500434(+) (10)	NA	Q2JJQ0	tRNA (guanine-N(7)-)-methyltransferase	AT5G17660.1	tRNA (guanine-N-7) methyltransferase 	LOC_Os01g35170.1	"tRNA methyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93272.1.A1_at	B	B1S	POPTR_0018s01250	POPTR_0018s01250 (6:173)	NA	NA	NA	NA	AT4G29250.1	HXXXD-type acyl-transferase family protein 	LOC_Os03g53360.1	"transferase family protein, putative, expressed"	Medtr1g013170.1	Transferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93286.1.A1_at	B	B1S	POPTR_0014s01500	POPTR_0014s01500 (7:456)	NA	NA	Q9SY55	"Calcium-transporting ATPase 3, endoplasmic reticulum-type"	AT1G10130.1	endoplasmic reticulum-type calcium-transporting ATPase 3 	LOC_Os03g52090.1	"calcium-transporting ATPase 3, endoplasmic reticulum-type, putative"	Medtr8g029470.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.93310.1.S1_at	B	B1S	POPTR_0008s05250	POPTR_0008s05250 (8:140)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93349.1.A1_at	B	B1S	POPTR_0010s15820	POPTR_0010s15820 (7:436)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g037750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93354.1.A1_at	B	B1S	POPTR_0005s10080	POPTR_0005s10080 (8:390)	NA	NA	Q9SK55	NAC domain-containing protein 42	AT3G12910.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os03g56580.1	"no apical meristem protein, putative, expressed"	Medtr2g088080.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.93364.2.A1_at	B	B1S	POPTR_0001s04070	POPTR_0001s04070 (1:319)	NA	NA	NA	NA	AT5G56520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55365.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr4g137000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9338.1.S1_at	B	B1S	POPTR_0014s17660	POPTR_0014s17660 (8:31)	NA	NA	A4R1J7	Protein transport protein SEC23	AT2G21630.1	Sec23/Sec24 protein transport family protein 	LOC_Os08g36994.1	"protein transport protein, putative, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.9338.2.S1_at	B	B1S	POPTR_0014s17660	POPTR_0014s17660 (5:241)	NA	NA	A4R1J7	Protein transport protein SEC23	AT2G21630.1	Sec23/Sec24 protein transport family protein 	LOC_Os08g36994.1	"protein transport protein, putative, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.93389.1.S1_at	B	B1S	POPTR_0005s26640	POPTR_0005s26640 (4:308)	NA	NA	Q8RWL2	Calcium-dependent protein kinase 29	AT1G76040.2	calcium-dependent protein kinase 29 	LOC_Os07g33110.4	"CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g031920.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.93419.1.A1_at	B	B2S	POPTR_0004s01420	POPTR_0004s01420 (3:325)//POPTR_0004s01440 (1:101)	NA	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02310.1	expressed protein	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.93473.1.A1_at	B	B1S	POPTR_0002s02880	POPTR_0002s02880 (4:441)	NA	NA	Q8VD66	Abhydrolase domain-containing protein 4	AT4G24160.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g34860.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g153980.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93490.1.A1_at	B	B1S	POPTR_0001s18630	POPTR_0001s18630 (3:116)	NA	NA	P29102	"3-isopropylmalate dehydrogenase, chloroplastic"	AT1G80560.1	isopropylmalate dehydrogenase 2 	LOC_Os03g45320.1	"dehydrogenase, putative, expressed"	Medtr2g127240.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.936.4.S1_at	B	B1S	POPTR_0002s10000	POPTR_0002s10000 (4:99)	NA	NA	P46266	14-3-3-like protein	AT1G78300.1	general regulatory factor 2 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.9361.1.A1_at	B	B1S	POPTR_0002s08640	POPTR_0002s08640 (7:379)	scaffold_2:6048744-6049259(-) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT1G77660.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os09g28060.1	"MORN repeat domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.93687.1.S1_at	B	B1S	POPTR_0012s13880	POPTR_0012s13880 (0:11)	scaffold_12:13838468-13838508(-) (9)	NA	Q9FJ90	Ethylene-responsive transcription factor ERF025	AT5G52020.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g45420.1	"AP2 domain containing protein, expressed"	Medtr1g129460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.93878.2.S1_at	B	B2S	POPTR_0011s02250	POPTR_0011s08230 (7:158)//POPTR_0011s02250 (7:158)	NA	NA	NA	NA	AT1G30130.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os07g05870.1	expressed protein	Medtr2g024460.1	Protein of unknown function DUF1365 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94172.1.A1_at	B	B1A	POPTR_0006s07610	POPTR_0006s07610 (8:401)	scaffold_6:5528887-5529406(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g48680.1	expressed protein	Medtr8g129580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94207.1.S1_at	B	B1S	POPTR_0002s11430	POPTR_0002s11430 (7:1533)	NA	NA	Q9M439	"Branched-chain-amino-acid aminotransferase 2, chloroplastic"	AT1G10070.2	branched-chain amino acid transaminase 2 	LOC_Os05g48450.6	"aminotransferase domain containing protein, putative, expressed"	Medtr5g015110.1	Branched-chain amino acid aminotransferase II 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.9433.1.A1_at	B	B1S	POPTR_0001s14240	POPTR_0001s14240 (8:1213)	scaffold_1:11180085-11182166(-) (9)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94357.1.S1_at	B	B1S	POPTR_0018s13890	POPTR_0018s13890 (7:253)	NA	NA	Q9LU68	Protein CHLOROPLAST IMPORT APPARATUS 2	AT5G57180.2	chloroplast import apparatus 2 	LOC_Os02g05470.1	"CCT motif family protein, expressed"	Medtr8g129690.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94482.1.S1_at	B	B1S	POPTR_0010s10580	POPTR_0010s10580 (6:361)	scaffold_10:11079485-11082927(+) (11)	NA	NA	NA	AT1G24040.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os04g39140.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr5g036340.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.94530.1.A1_at	B	B1S	POPTR_0006s27030	POPTR_0006s27030 (0:314)	NA	NA	Q9SUI5	"Photosystem I reaction center subunit psaK, chloroplastic"	AT1G30380.1	photosystem I subunit K 	LOC_Os07g05480.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
PtpAffx.94602.1.A1_at	B	B1S	POPTR_0004s05130	POPTR_0004s05130 (6:949)	scaffold_4:3877263-3878342(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94607.1.A1_at	B	B1S	POPTR_0006s19060	POPTR_0006s19060 (8:334)	NA	NA	NA	NA	AT4G28030.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os08g16010.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr8g127700.1	"GCN5-related N-acetyltransferase, putative "	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.94617.1.A1_at	B	B1S	POPTR_0006s23890	POPTR_0006s23890 (0:366)	NA	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
PtpAffx.94670.1.A1_at	B	B1S	POPTR_0016s04000	POPTR_0016s04000 (3:211)	scaffold_16:2236531-2240617(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94743.1.A1_at	B	B1S	POPTR_0016s07390	POPTR_0016s07390 (0:19)	scaffold_16:5254139-5254182(-) (10)	NA	Q9FMS6	Probable CCR4-associated factor 1 homolog 11	AT5G22250.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	AC146630_12.1	"Polynucleotidyl transferase, Ribonuclease H fold AC146630.25 68628-67340 F EGN_Mt090430 200"	NA	NA	GO:0005634|nucleus
PtpAffx.94750.1.A1_at	B	B1S	POPTR_0015s14730	POPTR_0015s14730 (8:491)	NA	NA	Q9STY3	Probable pectinesterase/pectinesterase inhibitor 33	AT3G47400.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr3g040380.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.94796.1.A1_s_at	B	B1S	POPTR_0001s28810	POPTR_0001s28810 (5:86)	scaffold_1:27599293-27599402(+) (11)	NA	Q61545	RNA-binding protein EWS	AT5G58470.2	TBP-associated factor 15B 	LOC_Os01g07070.4	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g034290.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.94825.1.A1_at	B	B2S	POPTR_0004s00880	POPTR_0004s00880 (8:559)//POPTR_0021s00270 (2:554)	scaffold_4:396951-397626(-) (10)	NA	NA	NA	AT1G11915.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g25950.1	expressed protein	Medtr8g147140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94838.1.A1_at	B	B1S	POPTR_0015s04510	POPTR_0015s04510 (3:377)	NA	NA	P50699	Thaumatin-like protein	AT1G73620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os06g47600.1	"thaumatin family domain containing protein, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.94926.1.A1_at	B	B1S	POPTR_0019s15330	POPTR_0019s15330 (1:36)	scaffold_19:15861571-15862045(-) (10)	NA	Q9LVM1	"ABC transporter B family member 25, mitochondrial"	AT5G58270.1	ABC transporter of the mitochondrion 3 	LOC_Os06g03770.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g083810.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.94984.1.A1_at	B	B1S	POPTR_0014s12940	POPTR_0014s12940 (7:261)	scaffold_14:9535630-9536140(+) (11)	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.1	sodium hydrogen exchanger 2 	LOC_Os07g47100.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr8g139670.1	Sodium/hydrogen exchanger subfamily 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.95033.1.A1_at	B	B1S	POPTR_0005s12400	POPTR_0005s12400 (1:98)	NA	NA	Q58E76	ATPase family AAA domain-containing protein 3-A	AT2G18330.1	AAA-type ATPase family protein 	LOC_Os02g47760.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g020420.1	"ATPase family AAA domain-containing protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95043.1.A1_at	B	B1S	POPTR_0013s00560	POPTR_0013s00560 (7:198)	NA	NA	Q76PD2	LIM domain and RING finger protein C1223.01	AT3G62240.1	RING/U-box superfamily protein 	LOC_Os05g19970.1	"ZOS5-06 - C2H2 zinc finger protein, expressed"	Medtr7g133640.1	"Zinc finger, RING-type; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.95068.1.A1_at	B	B2A	POPTR_0019s01470	POPTR_0019s01470 (8:278)//POPTR_0019s01430 (7:275)	scaffold_121:24266-24496(+) (9)//scaffold_19:1186621-1186851(-) (9)	NA	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.95098.1.A1_at	B	B1S	POPTR_0013s09100	POPTR_0013s09100 (1:38)	scaffold_13:8649963-8650311(-) (11)	NA	Q96EY9	tRNA-specific adenosine deaminase-like protein 3	AT5G24670.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os09g04210.3	"hydrolase/ zinc ion binding protein, putative, expressed"	Medtr4g159340.1	"CMP/dCMP deaminase, zinc-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95144.1.A1_at	B	B1S	POPTR_0011s00460	POPTR_0011s00460 (1:380)	NA	NA	P34669	Uncharacterized protein ZK686.3	AT1G61790.1	Oligosaccharyltransferase complex/magnesium transporter family protein 	LOC_Os03g36730.1	"OST3/OST6 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95149.1.A1_at	B	B1S	POPTR_0002s11240	POPTR_0002s11240 (6:381)	scaffold_2:8313510-8313966(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95213.1.A1_at	B	B1S	POPTR_0001s06590	POPTR_0001s06590 (8:237)	NA	NA	Q9M7X9	"Thioredoxin-like protein CITRX, chloroplastic"	AT3G06730.1	Thioredoxin z 	LOC_Os08g29110.1	"thioredoxin, putative, expressed"	Medtr3g005810.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.95259.1.A1_at	B	B1S	POPTR_0016s01730	POPTR_0016s01730 (7:343)	scaffold_16:789688-790052(-) (11)	NA	Q9M1H3	ABC transporter F family member 4	AT3G54540.1	general control non-repressible 4 	LOC_Os03g32630.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g089230.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95296.1.A1_at	B	B1S	POPTR_0003s09220	POPTR_0003s09220 (4:201)	scaffold_3:10549388-10549845(+) (11)	NA	Q54BN3	Probable replication factor C subunit 3	AT5G27740.1	ATPase family associated with various cellular activities (AAA)  	LOC_Os10g42400.1	expressed protein	Medtr3g163740.1	"DNA polymerase III clamp loader subunit, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.953.3.S1_at	B	B1S	POPTR_0012s12140	POPTR_0012s12140 (7:418)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95343.1.A1_at	B	B1S	POPTR_0019s07680	POPTR_0019s07680 (8:1636)	NA	NA	Q9Y3E5	"Peptidyl-tRNA hydrolase 2, mitochondrial"	AT5G16870.1	Peptidyl-tRNA hydrolase II (PTH2) family protein 	LOC_Os04g55860.1	"peptidyl-tRNA hydrolase, putative, expressed"	Medtr4g100820.1	Protein of unknown function UPF0099 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004045|aminoacyl-tRNA hydrolase activity	NA
PtpAffx.95347.1.S1_at	B	B1S	POPTR_0005s15840	POPTR_0005s15840 (6:379)	NA	NA	Q6NRL0	PrdX-deacylase domain-containing protein 1	AT1G44835.2	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g52880.2	"ybaK/prolyl-tRNA synthetase family protein, putative, expressed"	Medtr3g097700.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95353.1.A1_at	B	B1S	POPTR_0034s00210	POPTR_0034s00210 (1:239)	NA	NA	NA	NA	AT3G21400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g35550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95378.1.A1_at	B	B1S	POPTR_0013s04750	POPTR_0013s04750 (5:334)	NA	NA	Q54ML6	Probable ran guanine nucleotide release factor	AT1G69680.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os04g38610.2	"RAN guanine nucleotide release factor, putative, expressed"	Medtr5g040620.1	Ran-interacting Mog1 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95382.1.A1_at	B	B1S	POPTR_0491s00200	POPTR_0491s00200 (5:119)	NA	NA	NA	NA	AT3G59680.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g41860.1	expressed protein	Medtr4g128470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95396.1.A1_at	B	B1S	POPTR_0008s12880	POPTR_0008s12880 (8:77)	NA	NA	NA	NA	AT1G14990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g42120.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95418.1.A1_at	B	B1S	POPTR_0018s01810	POPTR_0018s01810 (8:249)	NA	NA	NA	NA	AT4G35530.1	phosphatidylinositolglycan-related 	LOC_Os05g07260.2	"phosphatidylinositolglycan-related, putative, expressed"	Medtr7g005890.1	phosphatidylinositolglycan-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95441.1.A1_at	B	B1S	POPTR_0008s19770	POPTR_0008s19770 (1:3617)	NA	NA	NA	NA	AT1G70180.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g39090.1	"SAM domain containing protein, putative, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95495.1.A1_at	B	B1S	POPTR_0001s45310	POPTR_0001s45310 (7:442)	NA	NA	Q9ZSB5	Ubiquitin carboxyl-terminal hydrolase 10	AT4G10570.1	ubiquitin-specific protease 9 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.95537.1.A1_at	B	B1S	POPTR_0015s13400	POPTR_0015s13400 (7:503)	NA	NA	NA	NA	AT5G52180.1	"LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os06g03820.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95569.1.A1_at	B	B1S	POPTR_0018s12920	POPTR_0018s12920 (8:389)	scaffold_18:13406833-13407293(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95606.1.A1_at	B	B1S	POPTR_0005s06600	POPTR_0005s06600 (0:14)	scaffold_5:4389508-4389764(-) (11)//scaffold_5:4415994-4416250(-) (11)	NA	NA	NA	AT5G64010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g142970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9573.1.S1_at	B	B1S	POPTR_0001s09520	POPTR_0001s09520 (7:1162)	NA	NA	Q9FZ36	Mitogen-activated protein kinase kinase kinase 2	AT1G63700.1	Protein kinase superfamily protein 	LOC_Os04g47240.3	"STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g126720.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.95765.1.A1_at	B	B1S	POPTR_0001s25390	POPTR_0001s25390 (0:212)	NA	NA	NA	NA	AT5G59000.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os05g37900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9579.1.S1_at	B	B1S	POPTR_0007s14480	POPTR_0007s14480 (8:1363)	NA	NA	Q9T072	Transcription factor bHLH25	AT4G37850.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g51580.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g010480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.95804.1.A1_s_at	B	B1S	POPTR_0003s03140	POPTR_0003s03140 (5:177)	scaffold_3:3526750-3527246(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G56890.1	Protein kinase superfamily protein 	LOC_Os01g09860.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g045880.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.9582.2.S1_at	B	B1S	POPTR_0004s16600	POPTR_0004s16600 (8:320)	NA	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.9582.3.A1_at	B	B2S	POPTR_0009s12330	POPTR_0009s12330 (4:562)//POPTR_0004s16600 (0:550)	NA	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.9582.4.A1_at	B	B1S	POPTR_0009s12330	POPTR_0009s12330 (3:525)	NA	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.95860.1.A1_at	B	B1S	POPTR_0010s11690	POPTR_0010s11690 (5:236)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95892.1.A1_at	B	B1S	POPTR_0011s04620	POPTR_0011s04620 (8:294)	scaffold_11:4569521-4569880(+) (11)	NA	Q9FIY7	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3	AT1G61140.3	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related 	LOC_Os01g57110.2	"SNF2 family N-terminal domain containing protein, expressed"	Medtr2g014500.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.95909.1.A1_at	B	B1S	POPTR_0008s03620	POPTR_0008s03620 (8:847)	NA	NA	P47082	Vacuolar amino acid transporter 1	AT2G39130.1	Transmembrane amino acid transporter family protein 	LOC_Os02g01100.3	"transmembrane amino acid transporter protein, putative, expressed"	Medtr1g120430.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95913.1.A1_at	B	B1S	POPTR_0006s25450	POPTR_0006s25450 (2:993)	NA	NA	NA	NA	AT4G32910.1	"CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g54240.1	"nucleoporin, putative, expressed"	Medtr1g008010.1	Nup85 nucleoporin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95914.1.A1_at	B	B1S	POPTR_0001s18160	POPTR_0001s18160 (5:176)	scaffold_1:15206268-15206736(-) (11)	NA	Q54I39	IST1-like protein	AT1G79910.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os02g06430.1	"DUF292 domain containing protein, expressed"	Medtr4g158790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.95933.1.A1_at	B	B1S	POPTR_0005s26660	POPTR_0005s26660 (8:413)	scaffold_5:24579447-24579945(-) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT1G20270.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr3g157260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.95985.1.A1_at	B	B2A	POPTR_0001s26545	POPTR_0001s26545 (5:168)//POPTR_0001s26540 (1:25)	scaffold_1:25522657-25523565(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96176.1.S1_at	B	B1S	POPTR_0008s15930	POPTR_0008s15930 (8:1078)	NA	NA	NA	NA	AT3G55760.3	unknown protein; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2). 	LOC_Os11g37560.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96234.1.A1_at	B	B2S	POPTR_0320s00210	POPTR_0320s00210 (8:311)//POPTR_0004s17710 (0:260)	NA	NA	Q9URY4	Putative amidase C869.01	AT4G34880.1	Amidase family protein 	LOC_Os04g10530.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.96246.1.S1_at	B	B1S	POPTR_0018s12880	POPTR_0018s12880 (7:274)	NA	NA	NA	NA	AT3G24150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9638.1.S1_at	B	B1S	POPTR_0006s12460	POPTR_0006s12460 (5:724)	scaffold_6:9600705-9603332(-) (10)	NA	Q8GY31	Dual specificity phosphatase Cdc25	AT5G03455.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os03g01770.1	"rhodanese, putative, expressed"	Medtr7g123960.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96423.1.S1_at	B	B1S	POPTR_0003s20860	POPTR_0003s20860 (3:1290)	NA	NA	NA	NA	AT5G07100.1	WRKY DNA-binding protein 26 	LOC_Os03g45450.1	"OsWRKY60 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g106500.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.9643.1.S1_at	B	B1S	POPTR_0002s02620	POPTR_0002s02620 (8:1727)	NA	NA	NA	NA	AT1G75670.2	DNA-directed RNA polymerases 	LOC_Os06g07190.2	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr7g092380.1	"RNA polymerase Rpb7, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.9646.1.S1_at	B	B2A	POPTR_0004s02810	POPTR_0728s00200 (5:460)//POPTR_0004s02810 (6:459)	NA	NA	Q9LPZ3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410	AT1G11410.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124500.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96516.2.S1_s_at	B	B1S	POPTR_0012s07110	POPTR_0012s07110 (8:31)	NA	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os02g51290.1	"HVA22, putative, expressed"	Medtr8g112530.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96550.2.S1_at	B	B1S	POPTR_0002s19550	POPTR_0002s19550 (1:140)	NA	NA	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT4G02010.1	Protein kinase superfamily protein 	LOC_Os01g14932.1	"NAK-like ser/thr protein kinase, putative, expressed"	Medtr7g133110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.96716.1.S1_at	B	B1S	POPTR_0009s00920	POPTR_0009s00920 (6:395)	NA	NA	Q8VZ13	Uncharacterized protein At1g08160	AT5G22870.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os02g44670.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g011410.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.96788.1.A1_at	B	B1S	POPTR_0005s26820	POPTR_0005s26820 (4:144)	scaffold_5:24684340-24684628(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96831.1.S1_at	B	B1S	POPTR_0014s11270	POPTR_0014s11270 (8:233)	NA	NA	Q9NPF5	DNA methyltransferase 1-associated protein 1	AT2G47210.1	myb-like transcription factor family protein 	LOC_Os05g46330.1	"MYB family transcription factor, putative, expressed"	Medtr7g133340.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.96952.1.S1_at	B	B1S	POPTR_0005s17160	POPTR_0005s17160 (0:164)	NA	NA	NA	NA	AT1G22310.2	methyl-CPG-binding domain 8 	LOC_Os09g29750.1	"ZOS9-15 - C2H2 zinc finger protein, expressed"	Medtr2g009110.1	"Zinc finger, C2H2-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.96967.1.S1_at	B	B1S	POPTR_0001s37980	POPTR_0001s37980 (8:874)	NA	NA	NA	NA	AT3G07660.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os09g08670.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g103900.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9699.1.A1_at	B	B1S	POPTR_0001s26130	POPTR_0001s26130 (7:262)	NA	NA	Q9W0T1	Nucleosome-remodeling factor subunit NURF301	AT5G12400.1	DNA binding;zinc ion binding;DNA binding 	LOC_Os07g46690.1	"PHD-finger family protein, expressed"	Medtr4g103750.1	"Immunoglobulin/major histocompatibility complex; DDT; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9708.1.S1_at	B	B1S	POPTR_0012s05610	POPTR_0012s05610 (6:488)	NA	NA	NA	NA	AT1G49000.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g48150.1	expressed protein	Medtr8g116380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97122.1.S1_at	B	B1S	POPTR_0018s00640	POPTR_0018s00640 (7:483)	NA	NA	Q94KR7	"Translation initiation factor IF-1, chloroplastic"	AT4G11175.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os05g22716.1	"translation initiation factor IF-1, chloroplast, putative"	Medtr8g070990.1	"S1, IF1 type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.97141.1.A1_at	B	B1S	POPTR_0018s09420	POPTR_0018s09420 (8:610)	NA	NA	Q9LHK4	Putative ABC transporter B family member 8	AT3G28345.1	ABC transporter family protein 	LOC_Os01g52550.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr6g009670.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.9716.1.S1_at	B	B1S	POPTR_0005s04430	POPTR_0005s04430 (5:299)	NA	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g29090.1	"NB-ARC/LRR disease resistance protein, putative"	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.97161.1.A1_at	B	B2S	POPTR_0014s01860	POPTR_0014s01860 (3:170)//POPTR_0014s17560 (0:145)	NA	NA	P33642	Probable D-amino acid oxidase PA4548	AT5G48440.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g33900.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr7g046700.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.97181.1.A1_at	B	B1S	POPTR_0009s15090	POPTR_0009s15090 (5:527)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97214.1.A1_at	B	B1S	POPTR_0002s18350	POPTR_0002s18350 (4:718)	NA	NA	Q6J163	Auxin-induced protein 5NG4	AT3G30340.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os04g38430.2	"nodulin, putative, expressed"	Medtr1g046330.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.97270.1.A1_at	B	B1S	POPTR_0001s20610	POPTR_0001s20610 (6:526)	NA	NA	NA	NA	AT1G72790.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g120690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9728.1.S1_at	B	B1S	POPTR_0002s09610	POPTR_0002s09610 (1:293)	NA	NA	Q9SYT0	Annexin D1	AT1G35720.1	annexin 1 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.9729.1.A1_at	B	B1S	POPTR_0001s41450	POPTR_0001s41450 (7:978)	NA	NA	Q9SZR9	ABC transporter G family member 9	AT4G27420.1	ABC-2 type transporter family protein 	LOC_Os08g07010.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr5g025510.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.97332.1.A1_at	B	B1S	POPTR_0005s07170	POPTR_0005s07170 (4:315)	NA	NA	NA	NA	AT5G08720.1	CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g62170.1	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9735.1.S1_at	B	B1S	POPTR_0017s05840	POPTR_0017s05840 (1:191)	scaffold_17:4542038-4542496(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr2g118460.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97406.1.S1_at	B	B1S	POPTR_0014s15950	POPTR_0014s15950 (6:539)	NA	NA	NA	NA	AT2G44310.1	Calcium-binding EF-hand family protein 	LOC_Os09g31040.1	"EF hand family protein, putative, expressed"	Medtr7g026040.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9743.1.A1_at	B	B1S	POPTR_0013s04530	POPTR_0013s04530 (8:328)	NA	NA	Q9SAK5	Myb family transcription factor APL	AT5G29000.2	Homeodomain-like superfamily protein 	LOC_Os03g21240.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.975.1.S1_at	B	B1S	POPTR_0013s07870	POPTR_0013s07870 (5:3354)	NA	NA	Q3ZBL5	"Peptidyl-tRNA hydrolase 2, mitochondrial"	AT3G03010.2	Peptidyl-tRNA hydrolase II (PTH2) family protein 	LOC_Os04g55860.1	"peptidyl-tRNA hydrolase, putative, expressed"	Medtr4g100820.1	Protein of unknown function UPF0099 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004045|aminoacyl-tRNA hydrolase activity	NA
PtpAffx.97551.1.S1_at	B	B1S	POPTR_0003s07320	POPTR_0003s07320 (7:189)	scaffold_3:8909542-8909798(+) (10)	NA	Q9S7J8	Copper-transporting ATPase RAN1	AT5G44790.1	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) 	LOC_Os06g45500.1	"copper-transporting ATPase, putative, expressed"	Medtr4g089740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.97582.1.S1_at	B	B1S	POPTR_0010s01900	POPTR_0010s01900 (7:553)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9761.1.A1_at	B	B1S	POPTR_0005s27560	POPTR_0005s27560 (0:245)	NA	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9780.1.A1_at	B	B1S	POPTR_0015s03380	POPTR_0015s03380 (4:387)	NA	NA	Q8IWF6	Protein FAM116A	AT1G73930.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g15390.1	"GA17271-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.97874.1.A1_at	B	B1S	POPTR_0001s14120	POPTR_0001s14120 (8:659)	NA	NA	Q9T0H9	"UPF0016 protein 2, chloroplastic"	AT4G13590.1	Uncharacterized protein family (UPF0016) 	LOC_Os11g34180.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr5g009920.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
PtpAffx.97907.1.A1_at	B	B1S	POPTR_0011s09370	POPTR_0011s09370 (6:1502)	NA	NA	Q42093	ABC transporter C family member 2	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.9793.1.S1_at	B	B1S	POPTR_0018s02910	POPTR_0018s02910 (7:501)	NA	NA	O81772	Peroxidase 46	AT2G24800.1	Peroxidase superfamily protein 	LOC_Os04g42100.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g138570.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.9797.1.S1_at	B	B1S	POPTR_0015s08830	POPTR_0015s08830 (8:192)	NA	NA	Q8L5Y9	Pantothenate kinase 2	AT4G32180.1	pantothenate kinase 2 	LOC_Os09g36270.1	"pantothenate kinase, putative, expressed"	Medtr3g113960.1	Eukaryotic pantothenate kinase 	GO:0015937|coenzyme A biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004594|pantothenate kinase activity	NA
PtpAffx.98008.1.S1_at	B	B1S	POPTR_0003s02320	POPTR_0003s02320 (0:53)	NA	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9807.1.S1_at	B	B1S	POPTR_0005s20640	POPTR_0005s20640 (4:299)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98092.1.S1_at	B	B1S	POPTR_0003s08770	POPTR_0003s08770 (5:694)	NA	NA	NA	NA	AT2G35360.1	ubiquitin family protein 	LOC_Os09g39980.1	"ubiquitin family protein, putative, expressed"	Medtr8g102930.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9810.1.S1_at	B	B1S	POPTR_0672s00200	POPTR_0672s00200 (8:262)	NA	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g12440.1	"receptor kinase, putative, expressed"	Medtr3g093270.1	Protein kinase; ; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.9811.1.A1_at	B	B1S	POPTR_0013s11250	POPTR_0013s11250 (5:364)	NA	NA	NA	NA	AT1G22630.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os05g01530.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9812.1.S1_at	B	B1S	POPTR_0010s17810	POPTR_0010s17810 (0:76)	NA	NA	A2Z9A6	UPF0496 protein 4	AT1G01550.2	Protein of unknown function (DUF793) 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98138.3.A1_at	B	B1S	POPTR_0016s07350	POPTR_0016s07350 (0:508)	NA	NA	Q5F477	UPF0554 protein C2orf43 homolog	AT3G11620.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g72870.3	"BAS1, putative, expressed"	AC146630_6.1	"Lipase, active site AC146630.25 17675-25469 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9814.1.A1_at	B	B1S	POPTR_0019s11280	POPTR_0019s11280 (6:344)	NA	NA	Q6GQV7	Erythroid differentiation-related factor 1	AT1G35660.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 309 Blast hits to 256 proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). 	LOC_Os01g65320.1	expressed protein	Medtr1g068580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9817.2.S1_at	B	B1A	POPTR_0006s15750	POPTR_0006s15750 (8:454)	NA	NA	Q9LHF1	Leucine-rich repeat extensin-like protein 4	AT4G29240.1	Leucine-rich repeat (LRR) family protein 	LOC_Os05g09640.1	"uncharacterized protein At4g06744 precursor, putative"	Medtr6g093990.1	"Uncharacterized protein At4g06744 precursor, related "	NA	GO:0005515|protein binding	NA
PtpAffx.98176.1.S1_at	B	B2S	POPTR_0009s13040	POPTR_0009s13040 (6:148)//POPTR_0009s13050 (1:25)	NA	NA	P33080	Auxin-induced protein X10A	AT5G18080.1	SAUR-like auxin-responsive protein family  	LOC_Os08g02530.1	OsSAUR32 - Auxin-responsive SAUR gene family member	Medtr4g098370.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9818.1.S1_at	B	B1S	POPTR_0003s05800	POPTR_0003s05800 (8:516)	NA	NA	Q8TEQ8	GPI ethanolamine phosphate transferase 3	AT5G17250.1	Alkaline-phosphatase-like family protein 	LOC_Os10g08940.2	expressed protein	Medtr5g033600.1	Alkaline phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9821.1.S1_at	B	B1S	POPTR_0006s26690	POPTR_0006s26690 (8:342)	NA	NA	Q9SV46	"Pentatricopeptide repeat-containing protein At3g54980, mitochondrial"	AT3G54980.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g42620.2	"pentatricopeptide containing protein, putative, expressed"	Medtr4g104120.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9824.1.S1_at	B	B1S	POPTR_0001s20400	POPTR_0001s20400 (4:256)	NA	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.2	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os02g13110.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9842.1.S1_at	B	B1S	POPTR_0012s01560	POPTR_0012s01560 (8:501)	NA	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.9843.1.S1_at	B	B1S	POPTR_0012s14180	POPTR_0012s14180 (8:249)	NA	NA	P36163	Mitochondrial metalloendopeptidase OMA1	AT5G51740.1	Peptidase family M48 family protein 	LOC_Os02g50230.1	"peptidase, putative, expressed"	Medtr6g067190.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
PtpAffx.98474.1.S1_at	B	B1S	POPTR_0004s00410	POPTR_0004s00410 (0:664)	NA	NA	Q8GYN5	RPM1-interacting protein 4	AT3G25070.1	RPM1 interacting protein 4 	LOC_Os03g63140.2	"nitrate-induced NOI protein, expressed"	Medtr2g029230.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9850.1.S1_at	B	B1S	POPTR_0001s18640	POPTR_0001s18640 (8:476)	NA	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr2g122680.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.9855.1.S1_at	B	B1A	POPTR_0018s02420	POPTR_0018s02420 (6:470)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98558.1.S1_at	B	B1S	POPTR_0014s04790	POPTR_0014s04790 (7:1059)	scaffold_14:3691462-3698630(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9856.1.S1_at	B	B1S	POPTR_0019s03120	POPTR_0019s03120 (5:301)	NA	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.9858.1.S1_at	B	B1S	POPTR_0002s04600	POPTR_0002s04600 (7:215)	NA	NA	Q9SX99	"Protein OSB1, mitochondrial"	AT1G47720.1	Primosome PriB/single-strand DNA-binding 	LOC_Os03g43420.1	"single-stranded DNA-binding protein, putative, expressed"	Medtr1g083420.1	Single-strand binding protein 	NA	GO:0003697|single-stranded DNA binding	NA
PtpAffx.98604.1.S1_at	B	B1S	POPTR_0014s04180	POPTR_0014s04180 (5:88)	NA	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9862.1.A1_at	B	B1S	POPTR_0018s13530	POPTR_0018s13530 (8:284)	scaffold_18:13840036-13840343(-) (9)	NA	P0C8S1	Probable disease resistance RPP8-like protein 2	AT1G50180.1	NB-ARC domain-containing disease resistance protein 	LOC_Os10g10360.3	"NBS-LRR disease resistance protein, putative, expressed"	Medtr2g043250.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.98646.1.S1_at	B	B1S	POPTR_0005s26320	POPTR_0005s26320 (8:416)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98655.1.S1_at	B	B1A	POPTR_0005s03700	POPTR_0005s03700 (8:476)	NA	NA	NA	NA	AT1G54920.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os11g05100.1	"nucleolar GTPase, putative, expressed"	Medtr1g099450.2	"nucleolar GTPase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9867.1.S1_at	B	B1S	POPTR_0002s18050	POPTR_0002s18050 (1:86)	NA	NA	Q689G6	Two-component response regulator-like PRR95	AT2G46790.1	pseudo-response regulator 9 	LOC_Os09g36220.2	"response regulator receiver domain containing protein, expressed"	Medtr7g146130.1	Response regulator receiver; CCT 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.987.1.S1_at	B	B1S	POPTR_0016s13910	POPTR_0016s13910 (0:8)	scaffold_16:13145565-13145671(+) (9)	NA	Q9LZX1	Protein LURP-one-related 15	AT5G01750.2	Protein of unknown function (DUF567) 	LOC_Os07g12730.1	"DUF567 domain containing protein, putative, expressed"	Medtr7g077600.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9870.1.A1_at	B	B1S	POPTR_0006s12040	POPTR_0006s12040 (4:104)	NA	NA	Q9DE27	RuvB-like 2	AT5G67630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g08770.1	"ruvB-like 2, putative, expressed"	Medtr3g080810.1	"AAA ATPase; TIP49, C-terminal "	NA	GO:0003678|DNA helicase activity||GO:0005524|ATP binding	NA
PtpAffx.9877.1.S1_at	B	B1S	POPTR_0014s11950	POPTR_0014s11950 (8:504)	scaffold_14:8840794-8841244(+) (9)	NA	NA	NA	AT1G02700.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	NA	NA	Medtr7g132700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98782.2.S1_at	B	B1S	POPTR_0006s03170	POPTR_0006s03170 (0:1707)	NA	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.1	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.98784.1.S1_at	B	B1S	POPTR_0006s12520	POPTR_0006s12520 (7:1011)	NA	NA	NA	NA	AT5G03420.1	5'-AMP-activated protein kinase-related 	LOC_Os03g48170.1	"5-AMP-activated protein kinase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9880.1.S1_at	B	B1S	POPTR_0008s11500	POPTR_0008s11500 (8:262)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.98869.1.S1_at	B	B1S	POPTR_0002s14480	POPTR_0002s14480 (7:971)	NA	NA	Q8VZ95	Vesicle-associated protein 1-1	AT3G60600.1	vesicle associated protein 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr4g028690.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.98909.1.S1_at	B	B1S	POPTR_0005s03020	POPTR_0005s03020 (7:191)	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.98919.1.A1_at	B	B1S	POPTR_0008s06070	POPTR_0008s06070 (8:528)	NA	NA	Q54TS4	Protein YIPF1 homolog	AT2G39805.1	Integral membrane Yip1 family protein 	LOC_Os05g38180.4	"Yip1 domain containing protein, expressed"	Medtr5g088310.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9908.1.S1_at	B	B1S	POPTR_0001s35160	POPTR_0001s35160 (7:793)	NA	NA	Q9LXE5	DNA (cytosine-5)-methyltransferase DRM1	AT5G15380.1	domains rearranged methylase 1 	LOC_Os03g02010.2	"DNA methyltransferase protein, putative, expressed"	Medtr5g019320.1	C-5 cytosine-specific DNA methylase; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9910.1.A1_at	B	B1S	POPTR_0001s32190	POPTR_0001s32190 (7:487)	NA	NA	O14138	Protein midA homolog	AT1G04900.1	Protein of unknown function (DUF185) 	LOC_Os01g68390.1	"Uncharacterized ACR, COG1565 containing protein, putative, expressed"	AC229699_21.1	Protein of unknown function DUF185 AC229699.6 84686-78510 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9912.1.S1_at	B	B1S	POPTR_0012s08340	POPTR_0012s08340 (7:252)	NA	NA	Q8VYR7	Boron transporter 1	AT2G47160.1	HCO3- transporter family 	LOC_Os12g37840.2	"boron transporter protein, putative, expressed"	Medtr3g114070.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99131.1.S1_at	B	B1S	POPTR_0014s09420	POPTR_0014s09420 (8:462)	NA	NA	NA	NA	AT3G61750.1	Cytochrome b561/ferric reductase transmembrane with DOMON related domain 	LOC_Os01g48850.1	"auxin-responsive protein, putative, expressed"	AC233651_15.1	DOMON; Cytochrome b561 / ferric reductase transmembrane AC233651.1 46198-48399 H EGN_Mt090430 200	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006548|histidine catabolic process	GO:0004500|dopamine beta-monooxygenase activity	NA
PtpAffx.9918.1.S1_at	B	B1S	POPTR_0013s04320	POPTR_0013s04320 (6:262)	NA	NA	Q9C6P3	Calcium-dependent protein kinase 33	AT3G04530.1	phosphoenolpyruvate carboxylase kinase 2 	LOC_Os02g56310.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g093530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.99183.1.S1_at	B	B1S	POPTR_0010s08830	POPTR_0010s08830 (8:556)	NA	NA	P93829	PRA1 family protein D	AT1G04260.1	CAMV movement protein interacting protein 7 	LOC_Os01g10010.2	"prenylated rab acceptor, putative, expressed"	Medtr6g092540.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9920.1.A1_at	B	B1S	POPTR_0002s13310	POPTR_0002s13310 (5:458)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9922.1.A1_at	B	B1S	POPTR_0606s00210	POPTR_0606s00210 (0:491)	NA	NA	O81488	PHD finger protein At5g26210	AT2G02470.1	alfin-like 6 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.993.3.A1_s_at	B	B1S	POPTR_0010s07690	POPTR_0010s07690 (8:31)	NA	NA	P49690	60S ribosomal protein L23	AT3G04400.1	Ribosomal protein L14p/L23e family protein 	LOC_Os10g32920.1	"ribosomal protein, putative, expressed"	Medtr7g116740.1	Ribosomal protein L14b/L23e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.993.6.S1_at	B	B2S	POPTR_0008s17110	POPTR_0008s17110 (5:382)//POPTR_1243s00200 (5:376)	NA	NA	P49690	60S ribosomal protein L23	AT3G04400.1	Ribosomal protein L14p/L23e family protein 	LOC_Os10g32920.1	"ribosomal protein, putative, expressed"	Medtr7g116740.1	Ribosomal protein L14b/L23e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.99434.1.S1_at	B	B1S	POPTR_0001s08500	POPTR_0001s08500 (1:349)	scaffold_1:6468006-6475624(-) (10)	NA	O82743	Agamous-like MADS-box protein AGL19	AT4G22950.1	AGAMOUS-like 19 	LOC_Os10g39130.2	"OsMADS56 - MADS-box family gene with MIKCc type-box, expressed"	Medtr7g083450.1	"Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.9947.2.S1_at	B	B1S	POPTR_0006s16360	POPTR_0006s16360 (7:545)	NA	NA	NA	NA	AT4G28990.1	RNA-binding protein-related 	LOC_Os02g17470.2	"RNA-binding protein-related, putative, expressed"	Medtr6g099320.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.99473.3.S1_at	B	B1S	POPTR_0002s12730	POPTR_0002s12730 (8:291)	NA	NA	Q42463	"Protein DCL, chloroplastic"	AT1G45230.1	Protein of unknown function (DUF3223) 	LOC_Os02g52744.1	"DCL, chloroplast precursor, putative, expressed"	Medtr3g147730.1	"Protein DCL, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9950.2.A1_at	B	B1S	POPTR_0001s43980	POPTR_0001s43980 (0:395)	NA	NA	Q64LD2	WD repeat-containing protein 25	AT5G54520.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g21490.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086930.1	"Pre-mRNA-processing factor 17, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9951.1.S1_at	B	B1S	POPTR_0001s39540	POPTR_0001s39540 (5:399)	scaffold_1:38765455-38768082(+) (11)	NA	O65355	Gamma-glutamyl hydrolase	AT1G78680.2	gamma-glutamyl hydrolase 2 	LOC_Os05g44130.1	"gamma-glutamyl hydrolase precursor, putative, expressed"	Medtr2g091570.2	Peptidase C26 	GO:0006541|glutamine metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.99547.1.S1_at	B	B1S	POPTR_0003s06730	POPTR_0003s06730 (4:351)	NA	NA	Q338N2	Zinc finger CCCH domain-containing protein 62	AT5G66840.1	SAP domain-containing protein 	LOC_Os10g25220.1	"SAP domain containing protein, expressed"	Medtr8g025790.1	"Zinc finger, CCCH-type; DNA-binding SAP "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.99586.1.S1_at	B	B1S	POPTR_0016s14480	POPTR_0016s14480 (7:384)	NA	NA	NA	NA	AT5G43180.1	"Protein of unknown function, DUF599 "	LOC_Os08g40940.1	expressed protein	Medtr7g080460.1	Protein of unknown function DUF599 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99640.1.S1_at	B	B1S	POPTR_0006s19590	POPTR_0006s19590 (7:555)	NA	NA	NA	NA	AT2G24060.1	Translation initiation factor 3 protein 	LOC_Os02g55120.1	"translation initiation factor IF-3, putative, expressed"	Medtr8g145010.1	Initiation factor 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99654.1.S1_at	B	B1S	POPTR_0008s10070	POPTR_0008s10070 (6:462)	NA	NA	Q8RWB8	E3 ubiquitin-protein ligase UPL6	AT3G17205.3	ubiquitin protein ligase 6 	LOC_Os05g06690.2	"HECT-domain domain containing protein, expressed"	Medtr2g037340.1	IQ calmodulin-binding region; HECT 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.99678.2.S1_at	B	B1S	POPTR_0002s20450	POPTR_0002s20450 (0:19)	scaffold_2:16496987-16497450(+) (11)	NA	Q9LXX6	Probable exocyst complex component 6	AT4G02350.1	exocyst complex component sec15B 	LOC_Os01g24950.2	"exocyst complex component 6, putative, expressed"	Medtr1g107350.1	Exocyst complex subunit Sec15-like 	GO:0006904|vesicle docking during exocytosis	NA	GO:0000145|exocyst
PtpAffx.99687.1.S1_at	B	B1S	POPTR_0014s13990	POPTR_0014s13990 (5:383)	NA	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT3G58690.1	Protein kinase superfamily protein 	LOC_Os05g11750.3	"protein kinase, putative, expressed"	Medtr2g097970.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.99708.1.A1_at	B	B1S	POPTR_0001s47660	POPTR_0001s47660 (7:270)	NA	NA	Q8RXR2	Chloride channel protein CLC-f	AT1G55620.2	chloride channel F 	LOC_Os08g38980.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr5g106870.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.99737.1.A1_at	B	B1S	POPTR_0011s08700	POPTR_0011s08700 (1:1956)	NA	NA	Q6ATG6	Ribonuclease 3-like protein 2	AT3G20420.1	RNAse THREE-like protein 2 	LOC_Os05g18850.1	"endoribonuclease Dicer, putative, expressed"	Medtr3g142860.1	"Ribonuclease III, bacterial "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.99762.1.A1_at	B	B1S	POPTR_0012s10175	POPTR_0012s10175 (4:198)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99774.1.S1_at	B	B1S	POPTR_0010s22630	POPTR_0010s22630 (8:444)	NA	NA	Q680Q4	E3 SUMO-protein ligase SIZ1	AT5G60410.1	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr4g080810.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.99777.1.A1_at	B	B1S	POPTR_0005s19030	POPTR_0005s19030 (7:733)	NA	NA	NA	NA	AT4G07990.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g51830.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.99816.1.A1_at	B	B1S	POPTR_0018s11070	POPTR_0018s11070 (8:456)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.99823.1.A1_at	B	B1S	POPTR_0005s26280	POPTR_0005s26280 (0:111)	NA	NA	Q9ZRZ8	DEAD-box ATP-dependent RNA helicase 28	AT4G16630.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os12g29660.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g067120.1	"Helicase, C-terminal "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.99850.1.A1_at	B	B1S	POPTR_0011s17230	POPTR_0011s17230 (0:228)	NA	NA	Q9FG77	Probable WRKY transcription factor 2	AT5G56270.1	WRKY DNA-binding protein 2 	LOC_Os08g38990.4	"OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.99856.1.S1_at	B	B1S	POPTR_0010s10260	POPTR_0010s10260 (6:321)	NA	NA	NA	NA	AT1G14410.1	ssDNA-binding transcriptional regulator 	LOC_Os06g05350.1	"whirly transcription factor domain containing protein, expressed"	Medtr5g039580.1	ssDNA-binding transcriptional regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9989.1.S1_at	B	B3S	POPTR_0640s00200	POPTR_0640s00200 (8:473)//POPTR_0011s12490 (7:395)//POPTR_0640s00210 (7:373)	NA	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	Medtr1g120630.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.1051.2.A1_a_at	C	C1A	POPTR_0006s13870	POPTR_0006s13870 (0:221)	scaffold_6:11053024-11053089(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1071.1.A1_at	C	C1S	POPTR_0015s14630	POPTR_0015s14630 (0:12)	NA	NA	Q9SB36	"Pentatricopeptide repeat-containing protein At4g25270, chloroplastic"	AT4G25270.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g63560.1	"pentatricopeptide, putative, expressed"	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1084.1.A1_a_at	C	C1A	POPTR_0009s10130	POPTR_0009s10130 (0:371)	scaffold_9:8792542-8792729(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1084.1.A1_at	C	C1A	POPTR_0009s10130	POPTR_0009s10130 (0:371)	scaffold_9:8792725-8792917(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1175.1.A1_at	C	C1S	POPTR_0004s24350	POPTR_0004s24350 (0:1347)	NA	NA	NA	NA	AT4G19350.1	embryo defective 3006 	LOC_Os08g06520.2	expressed protein	Medtr8g089330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1213.1.A1_s_at	C	C1S	POPTR_0009s16010	POPTR_0009s16010 (0:717)	scaffold_9:12263888-12266829(+) (9)	NA	Q9ZVC9	Protein FAR1-RELATED SEQUENCE 3	AT2G27110.2	FAR1-related sequence 3 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr3g111200.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.1268.1.S1_at	C	C1S	POPTR_0001s07010	POPTR_0001s07010 (0:1384)	NA	NA	Q7KWN2	Probable cytochrome P450 525A1	AT1G31800.1	"cytochrome P450, family 97, subfamily A, polypeptide 3 "	LOC_Os07g45000.1	"cytochrome P450, putative, expressed"	Medtr4g032760.2	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1483.2.A1_at	C	C1A	POPTR_0003s21000	POPTR_0003s21000 (0:10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1504.1.A1_a_at	C	C1S	POPTR_0005s21660	POPTR_0005s21660 (0:297)	scaffold_5:20770795-20770995(+) (11)	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.2	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.1702.1.A1_s_at	C	C1S	POPTR_0007s10660	POPTR_0007s10660 (0:92)	scaffold_7:10678656-10679002(-) (11)//scaffold_7:10689415-10689762(-) (11)	NA	NA	NA	AT5G67230.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g47340.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr5g016530.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
Ptp.1748.1.A1_at	C	C1S	POPTR_0010s20200	POPTR_0010s20200 (0:184)	scaffold_10:17885987-17886378(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1861.5.A1_at	C	C1A	POPTR_0010s22610	POPTR_0010s22610 (0:348)	scaffold_10:19452377-19452409(-) (9)	NA	NA	NA	AT2G35790.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724); Has 116 Blast hits to 116 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os03g63680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1938.1.S1_at	C	C2S	POPTR_0006s12540	POPTR_0006s12550 (0:1907)//POPTR_0006s12540 (0:295)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1952.1.S1_at	C	C1S	POPTR_0007s10230	POPTR_0007s10230 (0:2398)	scaffold_7:10072901-10072959(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr8g099180.1	"Lysine-rich arabinogalactan protein 18 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1972.1.A1_at	C	C1S	POPTR_0004s11090	POPTR_0004s11090 (0:1368)	scaffold_4:9685120-9685304(-) (11)	NA	NA	NA	AT5G64130.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os01g14690.6	"Lg106, putative, expressed"	Medtr2g077020.1	Lg106-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2063.2.A1_at	C	C1S	POPTR_0001s23520	POPTR_0001s23520 (0:882)	NA	NA	Q86HW6	Probable serine/threonine-protein kinase DDB_G0276461	AT2G32850.2	Protein kinase superfamily protein 	LOC_Os02g37880.3	"cyclin G-associated kinase, putative, expressed"	Medtr8g115300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2076.1.S1_at	C	C1S	POPTR_0002s19940	POPTR_0002s19940 (0:3368)	scaffold_2:15880566-15880808(+) (11)	NA	P38661	Probable protein disulfide-isomerase A6	AT2G47470.1	thioredoxin family protein 	LOC_Os01g23740.1	"OsPDIL2-2  protein disulfide isomerase PDIL2-2, expressed"	Medtr1g107440.1	"Thioredoxin-related; Thioredoxin domain 2; Endoplasmic reticulum ERp29, C-terminal; "	GO:0045454|cell redox homeostasis	NA	GO:0005783|endoplasmic reticulum
Ptp.2100.1.S1_at	C	C1S	POPTR_0001s21370	POPTR_0001s21370 (0:604)	NA	NA	Q6NVS2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT1G36050.1	Endoplasmic reticulum vesicle transporter protein 	LOC_Os04g38340.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2114.1.S1_at	C	C1S	POPTR_0012s09690	POPTR_0012s09690 (0:1532)	scaffold_12:10653197-10653334(-) (11)	NA	Q3ZCG2	Brain protein 44-like protein	AT5G20090.2	Uncharacterised protein family (UPF0041) 	LOC_Os09g20660.1	"UPF0041 domain containing protein, putative, expressed"	Medtr2g029550.1	Protein of unknown function UPF0041 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2317.1.S1_at	C	C1S	POPTR_0006s16280	POPTR_0006s16280 (0:466)	NA	NA	P0C026	"Nudix hydrolase 24, chloroplastic"	AT5G19470.2	nudix hydrolase homolog 24 	LOC_Os09g15340.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2378.1.S1_at	C	C1S	POPTR_0003s15010	POPTR_0003s15010 (0:1491)	NA	NA	Q8L6Y4	Polycomb group protein EMBRYONIC FLOWER 2	AT5G51230.1	VEFS-Box of polycomb protein 	LOC_Os09g13630.1	"ZOS9-03 - C2H2 zinc finger protein, expressed"	Medtr5g013280.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2395.1.S1_at	C	C1A	POPTR_0009s09780	POPTR_0009s09780 (0:137)	scaffold_9:8562620-8564319(-) (11)	NA	Q71DJ5	Triacylglycerol lipase 1	AT2G15230.1	lipase 1 	LOC_Os09g01590.1	"triacylglycerol lipase 1 precursor, putative, expressed"	Medtr5g092310.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
Ptp.2559.1.A1_a_at	C	C1S	POPTR_0012s10050	POPTR_0012s10050 (0:896)	scaffold_12:10912727-10912988(-) (11)	NA	Q9FMV5	Nuclear transcription factor Y subunit C-4	AT5G63470.2	"nuclear factor Y, subunit C4 "	LOC_Os02g07450.2	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr3g150580.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2569.1.S1_at	C	C1A	POPTR_0014s09160	POPTR_0014s09160 (0:204)	scaffold_14:6789162-6789432(-) (11)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g43280.1	"hydroquinone glucosyltransferase, putative, expressed"	Medtr7g040180.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2576.1.S1_at	C	C1S	POPTR_0008s07780	POPTR_0008s07780 (0:1690)	scaffold_8:4779203-4779360(+) (11)	NA	P62313	U6 snRNA-associated Sm-like protein LSm6	AT2G43810.2	Small nuclear ribonucleoprotein family protein 	LOC_Os02g30624.2	"LSM domain containing protein, expressed"	Medtr4g110140.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2601.1.S1_at	C	C1S	POPTR_0009s12110	POPTR_0009s12110 (0:2536)	scaffold_9:9932170-9932237(-) (11)	NA	O48671	Protein RER1B	AT2G21600.1	endoplasmatic reticulum retrieval protein 1B 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
Ptp.2815.1.S1_at	C	C1S	POPTR_0006s07180	POPTR_0006s07180 (0:1358)	NA	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT5G57100.1	Nucleotide/sugar transporter family protein 	LOC_Os02g49260.1	"transporter-related, putative, expressed"	Medtr2g043150.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2815.1.S1_s_at	C	C1S	POPTR_0006s07180	POPTR_0006s07180 (0:1358)	scaffold_6:5157059-5157352(-) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT5G57100.1	Nucleotide/sugar transporter family protein 	LOC_Os02g49260.1	"transporter-related, putative, expressed"	Medtr2g043150.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2839.2.S1_at	C	C1S	POPTR_0012s10840	POPTR_0012s10840 (0:1113)	scaffold_12:11543434-11543978(+) (11)	NA	Q55467	Magnesium-protoporphyrin O-methyltransferase	AT4G25080.5	magnesium-protoporphyrin IX methyltransferase 	LOC_Os06g04150.1	"magnesium-protoporphyrin O-methyltransferase, putative, expressed"	Medtr4g152280.1	Magnesium protoporphyrin O-methyltransferase 	GO:0015979|photosynthesis||GO:0015995|chlorophyll biosynthetic process	GO:0046406|magnesium protoporphyrin IX methyltransferase activity	NA
Ptp.305.1.A1_at	C	C2S	POPTR_0003s02090	POPTR_0003s02090 (0:500)//POPTR_0027s00380 (0:391)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3058.1.S1_s_at	C	C1S	POPTR_0015s01560	POPTR_0015s01560 (0:879)	scaffold_15:975648-975736(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.309.1.A1_at	C	C1S	POPTR_0013s05500	POPTR_0013s05500 (0:1849)	scaffold_13:3934220-3934292(+) (10)	NA	Q552J0	T-complex protein 1 subunit theta	AT3G03960.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g59020.1	"T-complex protein, putative, expressed"	Medtr6g030660.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.3139.1.S1_at	C	C1S	POPTR_0013s02270	POPTR_0013s02270 (0:755)	NA	NA	Q99KU0	Transmembrane protein 49	AT4G14950.1	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.32.1.S1_at	C	C1S	POPTR_0001s28800	POPTR_0001s28800 (0:1369)	NA	NA	Q6CRJ6	Mitochondrial import inner membrane translocase subunit TIM22	AT3G10110.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os03g18500.2	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr4g107590.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.3333.2.A1_at	C	C1S	POPTR_0001s09830	POPTR_0001s09830 (0:1478)	NA	NA	P92947	"Monodehydroascorbate reductase, chloroplastic"	AT1G63940.2	monodehydroascorbate reductase 6 	LOC_Os08g05570.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.3343.1.S1_at	C	C1S	POPTR_0014s08690	POPTR_0014s08690 (0:1602)	scaffold_14:6446559-6446743(+) (11)	NA	O82352	Reticulon-like protein B5	AT2G46170.1	Reticulon family protein 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.3348.2.A1_a_at	C	C1A	POPTR_0017s12620	POPTR_0017s12620 (0:73)	scaffold_17:12820689-12822768(-) (10)	NA	Q84J46	Pentatricopeptide repeat-containing protein At3g29290	AT3G29290.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g11310.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015660.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3392.1.A1_at	C	C2S	POPTR_0001s33650	POPTR_0001s33660 (0:766)//POPTR_0001s33650 (0:399)	scaffold_1:31857168-31857257(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3449.1.S1_at	C	C1S	POPTR_0006s15740	POPTR_0006s15740 (0:18)	scaffold_6:13343895-13343990(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G29230.1	NAC domain containing protein 75 	LOC_Os01g09550.1	"no apical meristem protein, putative, expressed"	Medtr4g160220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.3451.1.S1_at	C	C1S	POPTR_0004s06550	POPTR_0004s06550 (0:707)	scaffold_4:5276406-5276506(+) (11)	NA	Q9FZ89	"UPF0426 protein At1g28150, chloroplastic"	AT1G28150.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 96 Blast hits to 96 proteins in 44 species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g44590.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3488.1.S1_at	C	C1S	POPTR_0010s25620	POPTR_0010s25620 (0:540)	NA	NA	Q9FMQ1	"Pentatricopeptide repeat-containing protein At5g12100, mitochondrial"	AT5G12100.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os08g31110.1	"PPR repeat domain containing protein, putative, expressed"	AC233672_1.1	Pentatricopeptide repeat AC233672.2 5130-7951 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3603.1.S1_at	C	C1S	POPTR_0005s26940	POPTR_0005s26940 (0:598)	scaffold_5:24780630-24780931(-) (11)	NA	Q8VXV7	Lysine-specific histone demethylase 1 homolog 1	AT1G62830.1	LSD1-like 1 	LOC_Os02g51880.1	"amine oxidase, putative, expressed"	Medtr3g076130.1	Amine oxidase; SWIRM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3698.1.S1_at	C	C1A	POPTR_0018s01150	POPTR_0018s01150 (0:19)	NA	NA	Q9LFM6	"Pentatricopeptide repeat-containing protein At5g11310, mitochondrial"	AT5G11310.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g32170.1	"pentatricopeptide, putative, expressed"	Medtr1g013010.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3777.1.S1_s_at	C	C1S	POPTR_0001s10600	POPTR_0001s10600 (0:125)	scaffold_1:8249418-8249574(-) (11)	NA	Q42191	Mitochondrial inner membrane protein OXA1	AT5G62050.1	homolog of yeast oxidase assembly 1 (OXA1) 	LOC_Os03g02480.1	"inner membrane protein, putative, expressed"	AC233677_14.1	60 kDa inner membrane insertion protein AC233677.2 80748-73714 E EGN_Mt090430 200	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
Ptp.3844.1.S1_at	C	C1S	POPTR_0005s25980	POPTR_0005s25980 (0:1211)	scaffold_5:24150797-24151246(+) (9)	NA	Q6Q8A5	"Hexokinase-2, chloroplastic"	AT1G47840.1	hexokinase 3 	LOC_Os07g09890.1	"hexokinase, putative, expressed"	Medtr1g031050.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
Ptp.3848.1.S1_at	C	C1S	POPTR_0015s07630	POPTR_0015s07630 (0:63)	NA	NA	NA	NA	AT1G74730.1	Protein of unknown function (DUF1118) 	LOC_Os01g40310.1	expressed protein	Medtr3g036520.1	Protein of unknown function DUF1118 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3900.1.S1_at	C	C1S	POPTR_0007s02040	POPTR_0007s02040 (0:19)	NA	NA	NA	NA	AT1G05950.1	unknown protein; Has 50 Blast hits to 45 proteins in 14 species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os09g33940.1	expressed protein	Medtr2g118240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4013.1.S1_at	C	C1S	POPTR_0001s44790	POPTR_0001s44790 (0:771)	scaffold_1:42668964-42669003(-) (11)//scaffold_1:45188785-45188824(+) (11)//scaffold_727:8785-8817(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4086.1.A1_at	C	C1S	POPTR_0017s12770	POPTR_0017s12770 (0:3258)	scaffold_17:12941933-12942118(+) (10)	NA	NA	NA	AT5G15510.2	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g11400.1	"targeting protein-related, putative, expressed"	Medtr6g015060.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4106.1.A1_a_at	C	C1S	POPTR_0002s11510	POPTR_0002s11510 (0:1339)	scaffold_1182:2062-2578(+) (10)//scaffold_2:8557317-8557833(-) (10)	NA	NA	NA	AT3G12210.2	DNA binding 	LOC_Os03g51880.1	"GA15368-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4163.1.S1_at	C	C1S	POPTR_0009s01070	POPTR_0009s01070 (0:1017)	NA	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4164.1.S1_at	C	C1S	POPTR_0002s24770	POPTR_0002s24770 (0:2689)	scaffold_2:22038182-22038234(+) (11)	NA	Q09020	Wound-induced basic protein	AT3G07230.1	wound-responsive protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4269.1.A1_a_at	C	C1A	POPTR_0002s03670	POPTR_0002s03670 (0:691)	scaffold_1120:6084-6251(+) (10)//scaffold_2:2271231-2271453(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4307.1.S1_at	C	C1S	POPTR_0005s13840	POPTR_0005s13840 (0:0)	NA	NA	NA	NA	AT2G23690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os06g41940.1	expressed protein	Medtr5g018720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4314.1.S1_s_at	C	C1S	POPTR_0005s04190	POPTR_0005s04190 (0:2164)	scaffold_5:2814735-2814888(-) (11)	NA	Q9AYP4	40S ribosomal protein S10	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.1	"Plectin/S10, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4352.2.A1_at	C	C1S	POPTR_0015s09110	POPTR_0015s09110 (0:391)	NA	NA	P46299	40S ribosomal protein S4	AT5G07090.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	GO:0003723|RNA binding	NA
Ptp.439.1.S1_at	C	C1S	POPTR_0006s26700	POPTR_0006s26700 (0:1292)	NA	NA	Q7YS61	tRNA (cytosine-5-)-methyltransferase	AT5G25480.1	DNA methyltransferase-2 	LOC_Os01g42630.2	"C-5 cytosine-specific DNA methylase, putative, expressed"	Medtr2g009190.1	C-5 cytosine-specific DNA methylase 	GO:0006306|DNA methylation||GO:0044260|cellular macromolecule metabolic process||GO:0044281|small molecule metabolic process	GO:0003677|DNA binding	NA
Ptp.4682.2.S1_at	C	C1S	POPTR_0002s10490	POPTR_0002s10490 (0:1625)	scaffold_2:7567370-7567639(-) (11)	NA	NA	NA	AT1G09740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g52314.1	"BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed"	Medtr5g075020.3	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
Ptp.4682.2.S1_s_at	C	C1S	POPTR_0002s10490	POPTR_0002s10490 (0:1625)	scaffold_2:7567415-7567697(-) (11)	NA	NA	NA	AT1G09740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g52314.1	"BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed"	Medtr5g075020.3	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
Ptp.470.1.S1_at	C	C1S	POPTR_0008s22460	POPTR_0008s22460 (0:516)	scaffold_8:16982686-16982850(+) (11)	NA	Q22799	"Dynein light chain 1, cytoplasmic"	AT4G15930.1	Dynein light chain type 1 family protein 	LOC_Os01g15260.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr8g138520.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
Ptp.479.1.A1_at	C	C1S	POPTR_0015s07290	POPTR_0015s07290 (0:982)	scaffold_15:8434122-8434346(-) (11)	NA	Q9LF80	Putative glycosyltransferase 3	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g32750.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
Ptp.4807.2.A1_at	C	C1S	POPTR_0010s17840	POPTR_0010s17840 (0:26)	NA	NA	Q9SAJ3	"ATP-dependent zinc metalloprotease FTSH 12, chloroplastic"	AT1G79560.1	FTSH protease 12 	NA	NA	Medtr8g065640.1	Peptidase M41; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4835.1.S1_s_at	C	C1S	POPTR_0004s11970	POPTR_0004s11970 (0:21)	scaffold_4:10872887-10872975(+) (11)	NA	Q9S7I6	LRR receptor-like serine/threonine-protein kinase RPK2	AT3G02130.1	receptor-like protein kinase 2 	LOC_Os07g41140.1	"receptor-like protein kinase precursor, putative, expressed"	AC231342_17.1	Tyrosine protein kinase AC231342.3 81719-78663 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4874.1.S1_at	C	C1S	POPTR_0001s32400	POPTR_0001s32400 (0:3008)	NA	NA	Q8R3D1	TBC1 domain family member 13	AT4G13730.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g68010.1	"TBC domain containing protein, expressed"	Medtr3g105370.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.488.1.A1_at	C	C1S	POPTR_0014s11330	POPTR_0014s11330 (0:120)	NA	NA	NA	NA	AT1G02380.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g106390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.495.1.A1_s_at	C	C1S	POPTR_0012s04670	POPTR_0012s04670 (0:99)	NA	NA	Q9LV33	Beta-glucosidase 44	AT3G18080.1	B-S glucosidase 44 	LOC_Os01g32364.1	"Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4955.1.S1_at	C	C1S	POPTR_0004s05960	POPTR_0004s05960 (0:269)	NA	NA	NA	NA	AT4G18810.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g13970.2	"Complex I intermediate-associated protein 30 domain containing protein, putative, expressed"	Medtr4g135590.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5012.1.S1_at	C	C1S	POPTR_0005s12660	POPTR_0005s12660 (0:959)	NA	NA	NA	NA	AT4G36660.1	Protein of unknown function (DUF1195) 	LOC_Os07g41660.1	expressed protein	Medtr5g019780.1	Protein of unknown function DUF1195 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5270.1.S1_s_at	C	C1S	POPTR_0015s07330	POPTR_0015s07330 (0:476)	scaffold_15:8503642-8503733(+) (9)	NA	Q9ZTP5	"Ribulose-phosphate 3-epimerase, chloroplastic"	AT5G61410.2	D-ribulose-5-phosphate-3-epimerase 	LOC_Os03g07300.1	"ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0004750|ribulose-phosphate 3-epimerase activity	NA
Ptp.535.1.S1_at	C	C1S	POPTR_0014s18530	POPTR_0014s18530 (0:1803)	NA	NA	Q9SZD4	26S proteasome regulatory subunit 4 homolog A	AT4G29040.1	regulatory particle AAA-ATPase 2A 	LOC_Os03g18690.1	"26S protease regulatory subunit 4, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.5371.1.S1_a_at	C	C1S	POPTR_0001s12300	POPTR_0001s12300 (0:642)	scaffold_1:9519339-9519564(-) (10)	NA	NA	NA	AT4G20150.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g31490.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5398.1.S1_a_at	C	C1S	POPTR_0018s12740	POPTR_0018s12740 (0:2316)	scaffold_18:13256452-13256500(+) (11)//scaffold_18:13256523-13256571(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT3G01300.1	Protein kinase superfamily protein 	LOC_Os06g07230.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr8g121240.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5667.1.S1_at	C	C2S	POPTR_0018s06570	POPTR_0018s06570 (0:3048)//POPTR_0018s06580 (0:502)	scaffold_18:6616176-6616283(+) (11)	NA	O95372	Acyl-protein thioesterase 2	AT5G20060.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g07960.3	"acyl-protein thioesterase, putative, expressed"	Medtr3g136590.1	Phospholipase/Carboxylesterase 	NA	GO:0016787|hydrolase activity	NA
Ptp.5964.1.S1_at	C	C1A	POPTR_0015s00320	POPTR_0015s00320 (0:383)	scaffold_15:149918-150230(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5978.1.S1_at	C	C1S	POPTR_0006s22770	POPTR_0006s22770 (0:1753)	NA	NA	O82221	Probable small nuclear ribonucleoprotein G	AT3G11500.1	Small nuclear ribonucleoprotein family protein 	LOC_Os03g29740.1	"LSM domain containing protein, expressed"	Medtr7g127710.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5997.1.S1_at	C	C1S	POPTR_0015s11290	POPTR_0015s11290 (0:1646)	scaffold_15:11889627-11889970(+) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G41040.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr3g150860.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.6098.1.S1_at	C	C1S	POPTR_0007s06450	POPTR_0007s06450 (0:2644)	scaffold_7:4799528-4799939(-) (11)	NA	P73627	Uncharacterized protein sll1770	AT5G64940.2	ABC2 homolog 13 	LOC_Os02g36570.1	"ABC1 family domain containing protein, putative, expressed"	Medtr3g144970.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6101.2.S1_at	C	C1S	POPTR_0002s08770	POPTR_0002s08770 (0:96)	scaffold_2:6163936-6164188(+) (10)	NA	Q9CA23	Ubiquitin-fold modifier 1	AT1G77710.1	"CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). "	LOC_Os01g73140.1	"ubiquitin-fold modifier 1 precursor, putative, expressed"	Medtr5g065330.1	Protein of unknown function UPF0185 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6140.1.S1_at	C	C1S	POPTR_0012s04380	POPTR_0012s04380 (0:208)	NA	NA	NA	NA	AT5G06310.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g39280.1	"ATPOT1, putative, expressed"	Medtr4g154790.1	Telomere end binding protein 	GO:0060249|anatomical structure homeostasis||GO:0000723|telomere maintenance||GO:0044260|cellular macromolecule metabolic process	GO:0003677|DNA binding	"GO:0000784|""nuclear chromosome, telomeric region"""
Ptp.6140.1.S1_s_at	C	C1S	POPTR_0012s04380	POPTR_0012s04380 (0:208)	scaffold_12:3609096-3609342(-) (10)	NA	NA	NA	AT5G06310.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g39280.1	"ATPOT1, putative, expressed"	Medtr4g154790.1	Telomere end binding protein 	GO:0060249|anatomical structure homeostasis||GO:0000723|telomere maintenance||GO:0044260|cellular macromolecule metabolic process	GO:0003677|DNA binding	"GO:0000784|""nuclear chromosome, telomeric region"""
Ptp.6157.1.S1_at	C	C1S	POPTR_0012s11630	POPTR_0012s11630 (0:21)	NA	NA	P54151	Peptide methionine sulfoxide reductase	AT4G25130.1	peptide met sulfoxide reductase 4 	LOC_Os10g41400.1	"peptide methionine sulfoxide reductase, putative, expressed"	Medtr5g099990.1	Methionine sulfoxide reductase A 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0055114|oxidation reduction	"GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor"""	NA
Ptp.6175.2.S1_at	C	C1S	POPTR_0001s37030	POPTR_0001s37030 (0:2086)	scaffold_1:35851010-35851297(-) (11)	NA	NA	NA	AT5G55290.2	"ATPase, V0 complex, subunit E "	NA	NA	Medtr3g076670.2	ATP synthase subunit H 	GO:0015991|ATP hydrolysis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033179|""proton-transporting V-type ATPase, V0 domain"""
Ptp.6279.1.S1_at	C	C1S	POPTR_0002s22120	POPTR_0002s22120 (0:260)	NA	NA	Q98SJ2	DAZ-associated protein 1	AT3G07810.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g105300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6296.1.S1_at	C	C1S	POPTR_0013s11050	POPTR_0013s11050 (0:1286)	NA	NA	NA	NA	AT1G22520.1	Domain of unknown function (DUF543) 	LOC_Os03g62420.1	expressed protein	Medtr3g012620.1	Protein of unknown function DUF543 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6383.2.S1_at	C	C1S	POPTR_0086s00260	POPTR_0086s00260 (0:680)	scaffold_86:50450-50890(+) (9)	NA	Q6H7E4	"Thioredoxin M1, chloroplastic"	AT3G15360.1	thioredoxin M-type 4 	LOC_Os02g42700.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.6769.1.A1_at	C	C1S	POPTR_0003s16180	POPTR_0003s16180 (0:225)	scaffold_3:15792617-15793130(+) (11)	NA	Q9LYU7	Inactive leucine-rich repeat receptor-like protein kinase CORYNE	AT5G13290.2	Protein kinase superfamily protein 	LOC_Os01g70260.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr7g020720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6779.1.S1_a_at	C	C1S	POPTR_0004s22040	POPTR_0004s22040 (0:694)	scaffold_4:20978109-20978222(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6779.1.S1_at	C	C1S	POPTR_0004s22040	POPTR_0004s22040 (0:694)	scaffold_4:20977902-20977987(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6793.1.S1_at	C	C1S	POPTR_0011s15380	POPTR_0011s15380 (0:833)	scaffold_11:17473282-17473538(-) (9)	NA	Q9MAP3	"50S ribosomal protein L11, chloroplastic"	AT1G32990.1	plastid ribosomal protein l11 	LOC_Os03g03020.1	"L11 domain containing ribosomal protein, putative, expressed"	Medtr3g109450.1	Ribosomal protein L11 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6838.1.S1_at	C	C6S	POPTR_0001s22830	POPTR_0001s22830 (0:1576)//POPTR_0001s22960 (0:1324)//POPTR_0001s22930 (0:1302)//POPTR_0001s22910 (0:1282)//POPTR_0001s22920 (0:1255)//POPTR_0001s22880 (0:1255)	scaffold_1:21898076-21898299(-) (10)//scaffold_1:21923404-21923626(-) (9)//scaffold_1:21942877-21943100(-) (10)//scaffold_1:22009710-22009932(-) (10)	NA	Q9FSG7	Thaumatin-like protein 1a	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os07g23470.1	"thaumatin, putative, expressed"	Medtr7g124050.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6944.1.S1_at	C	C1S	POPTR_0008s22830	POPTR_0008s22830 (0:84)	NA	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G18590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os12g35350.2	"kelch repeat protein, putative, expressed"	Medtr8g139440.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7002.1.S1_a_at	C	C1A	POPTR_0018s04930	POPTR_0018s04930 (0:660)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7111.1.S1_s_at	C	C1S	POPTR_0014s10500	POPTR_0014s10500 (0:1742)	scaffold_14:7824465-7824855(-) (10)	NA	O23680	"Translocase of chloroplast 33, chloroplastic"	AT1G02280.2	translocon at the outer envelope membrane of chloroplasts 33 	LOC_Os03g13730.2	"translocase of chloroplast 34, putative, expressed"	Medtr7g104820.1	Chloroplast protein import component Toc34 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.7330.1.S1_at	C	C1S	POPTR_0015s10070	POPTR_0015s10070 (0:1400)	NA	NA	NA	NA	AT2G04410.1	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr8g109980.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7383.2.S1_a_at	C	C1S	POPTR_0004s20830	POPTR_0004s20830 (0:401)	scaffold_4:20208123-20208968(+) (10)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20780.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.7612.2.S1_at	C	C1S	POPTR_0012s01950	POPTR_0012s01950 (0:902)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.7665.1.S1_at	C	C1S	POPTR_0006s18930	POPTR_0006s18930 (0:1151)	NA	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	AC235006_4.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Helix-loop-helix DNA-binding AC235006.1 10927-5775 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7704.1.S1_at	C	C1S	POPTR_0575s00200	POPTR_0575s00200 (0:646)	scaffold_19:14152375-14152485(+) (9)//scaffold_575:4222-4332(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7727.1.S1_at	C	C1S	POPTR_0010s19440	POPTR_0010s19440 (0:14)	NA	NA	P42755	Em protein H5	AT2G40170.1	Stress induced protein 	LOC_Os05g28210.1	"small hydrophilic plant seed protein, putative, expressed"	AC233100_69.1	Small hydrophilic plant seed protein AC233100.6 300262-299531 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7911.1.S1_at	C	C1A	POPTR_0009s06600	POPTR_0009s06600 (0:1)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7948.1.S1_at	C	C1S	POPTR_0003s03140	POPTR_0003s03140 (0:1030)	NA	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G56890.1	Protein kinase superfamily protein 	LOC_Os01g09860.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g045880.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7959.1.S1_at	C	C1S	POPTR_0001s21720	POPTR_0001s21720 (0:577)	NA	NA	Q5R977	Protein FAM126B	AT5G64090.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g06860.1	expressed protein	Medtr5g094760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8.1.A1_s_at	C	C1S	POPTR_0001s45000	POPTR_0001s45000 (0:3220)	scaffold_1:45322297-45322607(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT4G27000.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g37270.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.8010.2.A1_at	C	C2S	POPTR_0013s08170	POPTR_0013s08170 (0:2417)//POPTR_0013s08180 (0:193)	NA	NA	Q9Y394	Dehydrogenase/reductase SDR family member 7	AT3G03330.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os11g16410.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g090010.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8063.1.S1_at	C	C1S	POPTR_0002s11700	POPTR_0002s11700 (0:608)	NA	NA	Q9SY57	Protein PHLOEM PROTEIN 2-LIKE A10	AT1G10150.1	Carbohydrate-binding protein 	LOC_Os03g56000.1	"PHLOEM 2-LIKE A10, putative, expressed"	Medtr5g015270.1	"Protein PHLOEM PROTEIN 2-LIKE A10, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8064.1.S1_at	C	C1S	POPTR_0006s12470	POPTR_0006s12470 (0:244)	NA	NA	D2HWM5	E3 ubiquitin-protein ligase RFWD3	AT5G03450.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g39850.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8117.1.S1_at	C	C1S	POPTR_0013s05370	POPTR_0013s05370 (0:867)	scaffold_13:3835227-3835261(+) (11)	NA	Q93YX4	5'-adenylylsulfate reductase-like 5	AT3G03860.1	APR-like 5 	LOC_Os03g59170.1	"OsAPRL5  adenosine 5'-phosphosulfate reductase-like OsAPRL5, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.951.2.A1_at	C	C2S	POPTR_0001s07240	POPTR_0001s07240 (0:1417)//POPTR_0001s07250 (0:37)	NA	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.959.1.S1_at	C	C1S	POPTR_0012s05780	POPTR_0012s05780 (0:1977)	NA	NA	Q3U1Y4	DENN domain-containing protein 4B	AT1G49040.1	stomatal cytokinesis defective / SCD1 protein (SCD1) 	LOC_Os01g39380.1	"SCD1, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.972.1.A1_s_at	C	C1S	POPTR_0013s06470	POPTR_0013s06470 (0:54)	scaffold_13:5054006-5054215(-) (11)	NA	O14981	TATA-binding protein-associated factor 172	AT3G54280.1	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases 	LOC_Os02g06592.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr4g041710.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.100107.1.A1_at	C	C1S	POPTR_0018s11870	POPTR_0018s11870 (0:251)	NA	NA	Q9C8T1	ABC transporter I family member 1	AT1G63270.1	non-intrinsic ABC protein 10 	LOC_Os04g53550.1	"ABC transporter, ATP-binding protein, putative"	Medtr8g145960.1	ABC transporter related 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.100339.1.S1_at	C	C1S	POPTR_0012s07670	POPTR_0012s07670 (0:266)	scaffold_12:8583947-8584172(-) (10)	NA	Q9STS3	Anaphase-promoting complex subunit 8	AT3G48150.1	anaphase-promoting complex subunit 8 	LOC_Os02g43920.1	"cell division cycle protein 23, putative, expressed"	Medtr8g025270.1	Cdc23 	GO:0030071|regulation of mitotic metaphase/anaphase transition	NA	GO:0005680|anaphase-promoting complex
PtpAffx.101158.1.A1_at	C	C1S	POPTR_0004s18160	POPTR_0004s18160 (0:654)	NA	NA	Q8LBA6	CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1	AT1G68000.1	phosphatidylinositol synthase 1 	LOC_Os02g03110.2	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr4g098430.1	CDP-alcohol phosphatidyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101374.1.A1_at	C	C1S	POPTR_0002s16190	POPTR_0002s16190 (0:999)	scaffold_2:12099351-12099691(-) (10)	NA	Q8LF97	SKP1-like protein 21	AT3G61415.2	SKP1-like 21 	LOC_Os03g01660.1	"SKP1, putative, expressed"	Medtr8g031960.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.101533.1.A1_at	C	C1S	POPTR_0014s10550	POPTR_0014s10550 (0:837)	scaffold_14:7871196-7871317(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101581.1.A1_at	C	C1A	POPTR_0019s09710	POPTR_0019s09710 (0:143)	scaffold_19:11320824-11321306(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104038.1.S1_at	C	C1S	POPTR_0005s18260	POPTR_0005s18260 (0:829)	NA	NA	Q3EDL4	Probable serine/threonine-protein kinase At1g01540	AT1G01540.2	Protein kinase superfamily protein 	LOC_Os05g36050.1	"serine/threonine-protein kinase, putative, expressed"	Medtr5g017030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1044.2.A1_at	C	C1S	POPTR_0002s17380	POPTR_0002s17380 (0:707)	scaffold_2:13143214-13143250(-) (11)	NA	NA	NA	AT2G46540.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g46450.1	"fiber protein Fb11, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10449.1.A1_at	C	C1S	POPTR_0014s16230	POPTR_0014s16230 (0:282)	scaffold_14:12316699-12316977(-) (10)	NA	Q9LDL7	Scarecrow-like transcription factor PAT1	AT5G48150.2	GRAS family transcription factor 	LOC_Os07g39470.1	"gibberellin response modulator protein, putative, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10604.3.S1_at	C	C1S	POPTR_0007s13920	POPTR_0007s13920 (0:1354)	scaffold_7:13919857-13919994(-) (9)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.106060.1.A1_at	C	C1S	POPTR_0013s06470	POPTR_0013s06470 (0:741)	NA	NA	O14981	TATA-binding protein-associated factor 172	AT3G54280.1	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases 	LOC_Os02g06592.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr4g041710.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.107894.2.A1_a_at	C	C1S	POPTR_0001s13680	POPTR_0001s13680 (0:191)	scaffold_1:10771920-10771956(-) (11)	NA	NA	NA	AT3G48660.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107969.2.A1_a_at	C	C1S	POPTR_0009s11580	POPTR_0009s11580 (0:84)	scaffold_9:9597887-9597981(-) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107969.2.A1_at	C	C1S	POPTR_0009s11580	POPTR_0009s11580 (0:84)	scaffold_9:9595103-9598034(-) (10)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108030.1.A1_at	C	C1S	POPTR_0015s00700	POPTR_0015s00700 (0:222)	scaffold_15:416626-416985(+) (11)	NA	Q8LEQ0	60S acidic ribosomal protein P1-3	AT5G24510.1	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.108624.1.A1_at	C	C1S	POPTR_0016s03170	POPTR_0016s03170 (0:65)	NA	NA	O22207	Ubiquitin carboxyl-terminal hydrolase 5	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.108986.1.S1_at	C	C1S	POPTR_0001s44610	POPTR_0001s44610 (0:1124)	scaffold_1:45081284-45081495(+) (9)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.112404.1.S1_at	C	C1S	POPTR_0016s14820	POPTR_0016s14820 (0:116)	NA	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT5G55040.2	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr8g005100.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113567.1.S1_at	C	C1S	POPTR_0012s04380	POPTR_0012s04380 (0:169)	NA	NA	NA	NA	AT5G06310.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g39280.1	"ATPOT1, putative, expressed"	Medtr4g154790.1	Telomere end binding protein 	GO:0060249|anatomical structure homeostasis||GO:0000723|telomere maintenance||GO:0044260|cellular macromolecule metabolic process	GO:0003677|DNA binding	"GO:0000784|""nuclear chromosome, telomeric region"""
PtpAffx.114487.2.A1_at	C	C1S	POPTR_0013s10060	POPTR_0013s10060 (0:89)	scaffold_13:10042265-10042770(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g07380.1	OsFBX188 - F-box domain containing protein	Medtr4g096100.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114528.1.A1_at	C	C1S	POPTR_0003s09720	POPTR_0003s09720 (0:105)	scaffold_3:10969926-10970036(-) (11)	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114956.1.A1_at	C	C1S	POPTR_0015s12510	POPTR_0015s12510 (0:144)	scaffold_15:12730311-12734960(-) (10)	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os11g42030.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11535.2.A1_at	C	C1S	POPTR_0018s10720	POPTR_0018s10720 (0:771)	NA	NA	Q9ZV51	RING-H2 finger protein ATL56	AT2G18670.1	RING/U-box superfamily protein 	LOC_Os02g50990.3	"RING-H2 finger protein ATL1Q, putative, expressed"	Medtr8g127780.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11535.2.A1_s_at	C	C1S	POPTR_0018s10720	POPTR_0018s10720 (0:771)	scaffold_18:11600575-11601888(-) (11)	NA	Q9ZV51	RING-H2 finger protein ATL56	AT2G18670.1	RING/U-box superfamily protein 	LOC_Os02g50990.3	"RING-H2 finger protein ATL1Q, putative, expressed"	Medtr8g127780.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11578.1.A1_at	C	C1S	POPTR_0016s08530	POPTR_0016s08530 (0:19)	scaffold_16:6343748-6344010(+) (11)	NA	P47927	Floral homeotic protein APETALA 2	AT2G28550.3	related to AP2.7 	LOC_Os07g13170.2	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.11661.1.A1_at	C	C1S	POPTR_0016s03670	POPTR_0016s03670 (0:74)	scaffold_16:2026627-2027027(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1169.1.A1_a_at	C	C1S	POPTR_0016s09080	POPTR_0016s09080 (0:242)	scaffold_16:6978401-6978454(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1169.1.A1_at	C	C1S	POPTR_0016s09080	POPTR_0016s09080 (0:242)	scaffold_16:6978252-6978393(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11702.1.A1_at	C	C1S	POPTR_0016s00260	POPTR_0016s00260 (0:21)	scaffold_16:31507-31771(+) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g20040.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118998.1.S1_at	C	C1S	POPTR_0006s26490	POPTR_0006s26490 (0:162)	NA	NA	NA	NA	AT5G11330.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os06g39660.1	"FAD binding domain containing protein, expressed"	Medtr1g013200.1	FAD dependent oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119256.1.A1_at	C	C1S	POPTR_0001s01310	POPTR_0001s01310 (0:424)	NA	NA	NA	NA	NA	NA	LOC_Os06g02520.1	"interacting protein of DMI3, putative, expressed"	Medtr5g027010.1	"interacting protein of DMI3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119731.1.S1_at	C	C1S	POPTR_0004s23970	POPTR_0004s23970 (0:1542)	scaffold_4:22595070-22595547(-) (9)	NA	Q9FIW5	Putative NAC domain-containing protein 94	AT2G02450.2	NAC domain containing protein 35 	LOC_Os01g66490.1	"no apical meristem protein, putative, expressed"	Medtr5g043830.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.120957.1.A1_at	C	C1A	POPTR_0018s12870	POPTR_0018s12870 (0:210)	scaffold_18:13376658-13377044(-) (11)	NA	NA	NA	AT3G15810.1	Protein of unknown function (DUF567) 	NA	NA	Medtr4g005550.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12098.1.S1_at	C	C1S	POPTR_0010s22310	POPTR_0010s22310 (0:296)	NA	NA	Q9HAU5	Regulator of nonsense transcripts 2	AT2G39260.1	binding;RNA binding 	LOC_Os02g42040.1	"MIF4G domain containing protein, putative, expressed"	Medtr2g055900.1	"Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.121329.1.A1_at	C	C1S	POPTR_0015s11520	POPTR_0015s11520 (0:1015)	scaffold_15:12092382-12092687(-) (11)	NA	NA	NA	AT3G48800.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os03g63320.1	"SAM domain containing protein, putative, expressed"	Medtr4g152000.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123033.1.A1_at	C	C1S	POPTR_0001s07540	POPTR_0001s07540 (0:1318)	NA	NA	Q7X8C5	Wall-associated receptor kinase-like 2	AT1G16130.1	wall associated kinase-like 2 	LOC_Os04g55760.1	OsWAK55 - OsWAK receptor-like protein kinase	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding||GO:0004713|protein tyrosine kinase activity	GO:0016021|integral to membrane
PtpAffx.12433.2.A1_at	C	C1S	POPTR_0002s08580	POPTR_0002s08580 (0:2952)	scaffold_2:5999037-5999603(-) (11)	NA	Q5E971	Transmembrane emp24 domain-containing protein 10	AT1G09580.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os06g10760.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr3g097670.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.12678.1.A1_at	C	C1A	POPTR_0014s00790	POPTR_0014s00790 (0:693)	NA	NA	NA	NA	AT2G22850.2	basic leucine-zipper 6 	LOC_Os08g26880.1	"bZIP transcription factor domain containing protein, expressed"	Medtr8g101980.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.126970.1.S1_at	C	C1S	POPTR_0017s06540	POPTR_0017s06540 (0:2939)	scaffold_17:4982746-4983138(+) (11)	NA	Q9M9L0	Anaphase-promoting complex subunit 11	AT3G05870.2	anaphase-promoting complex/cyclosome 11 	LOC_Os07g22840.1	"anaphase-promoting complex subunit 11, putative"	Medtr4g021940.1	"Anaphase-promoting complex subunit 11, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127288.1.A1_at	C	C1S	POPTR_0010s09770	POPTR_0010s09770 (0:8)	scaffold_10:10422234-10422510(-) (10)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os03g06340.1	"XS domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127441.1.A1_at	C	C1S	POPTR_0017s08770	POPTR_0017s08770 (0:42)	scaffold_17:7369693-7370185(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127835.1.A1_at	C	C1S	POPTR_0001s21720	POPTR_0001s21720 (0:894)	scaffold_1:20243371-20243538(-) (11)	NA	Q5R977	Protein FAM126B	AT5G64090.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g06860.1	expressed protein	Medtr5g094760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127874.1.A1_at	C	C1A	POPTR_1228s00010	POPTR_1228s00010 (0:143)	NA	NA	Q6J163	Auxin-induced protein 5NG4	AT1G75500.2	Walls Are Thin 1 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g028570.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.128048.1.A1_at	C	C1S	POPTR_0011s07830	POPTR_0011s07830 (0:1249)	scaffold_11:8736179-8736600(-) (10)//scaffold_11:8820664-8821085(-) (9)//scaffold_11:8917175-8917596(-) (9)//scaffold_12:2555068-2555497(-) (10)	NA	Q2EF88	Metal-nicotianamine transporter YSL3	AT5G53550.2	YELLOW STRIPE like 3 	LOC_Os04g45860.1	"transposon protein, putative, unclassified, expressed"	Medtr1g008580.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1310.1.A1_at	C	C1S	POPTR_0006s24120	POPTR_0006s24120 (0:4292)	scaffold_6:22787127-22787641(-) (10)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G33080.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g139660.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13113.1.S1_at	C	C1S	POPTR_0004s22040	POPTR_0004s22040 (0:688)	scaffold_4:20978003-20978035(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131130.1.S1_at	C	C2S	POPTR_0008s01670	POPTR_0008s01670 (0:312)//POPTR_0162s00230 (0:294)	scaffold_162:4962-14681(+) (11)//scaffold_162:14660-14765(+) (10)//scaffold_8:809435-818158(-) (10)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G01420.1	Glutaredoxin family protein 	LOC_Os03g44650.1	"glutaredoxin, putative, expressed"	Medtr1g112130.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.131212.1.A1_s_at	C	C1S	POPTR_0009s16520	POPTR_0009s16520 (0:263)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132035.1.A1_at	C	C1S	POPTR_0003s11150	POPTR_0003s11150 (0:8)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132164.1.A1_at	C	C1S	POPTR_0004s00410	POPTR_0004s00410 (0:137)	NA	NA	Q8GYN5	RPM1-interacting protein 4	AT3G25070.1	RPM1 interacting protein 4 	LOC_Os03g63140.2	"nitrate-induced NOI protein, expressed"	Medtr2g029230.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132371.1.A1_a_at	C	C1S	POPTR_0009s09880	POPTR_0009s09880 (0:79)	NA	NA	Q54DD7	Protein unc-50 homolog	AT2G15240.1	UNC-50 family protein 	LOC_Os09g02170.1	"unc-50, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132371.1.A1_at	C	C1S	POPTR_0009s09880	POPTR_0009s09880 (0:79)	NA	NA	Q54DD7	Protein unc-50 homolog	AT2G15240.1	UNC-50 family protein 	LOC_Os09g02170.1	"unc-50, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133327.1.A1_at	C	C1S	POPTR_0010s07920	POPTR_0010s07920 (0:26)	NA	NA	O22795	"50S ribosomal protein L28, chloroplastic"	AT2G33450.1	Ribosomal L28 family 	LOC_Os05g01110.1	"ribosomal protein L28 protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.133632.2.A1_at	C	C1S	POPTR_0002s15140	POPTR_0002s15140 (0:334)	scaffold_2:11291197-11291381(+) (11)	NA	O64635	Cytochrome P450 76C4	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os10g08540.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.134575.1.S1_at	C	C1S	POPTR_0009s16010	POPTR_0009s16010 (0:1002)	NA	NA	Q9ZVC9	Protein FAR1-RELATED SEQUENCE 3	AT2G27110.2	FAR1-related sequence 3 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr3g111200.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.13506.2.S1_at	C	C1S	POPTR_0008s06370	POPTR_0008s06370 (0:1417)	scaffold_8:3775271-3775435(+) (10)	NA	Q9LMK0	60S ribosomal protein L35a-1	AT1G07070.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.136067.1.A1_at	C	C1S	POPTR_0005s23620	POPTR_0005s23620 (0:736)	scaffold_5:22338810-22339065(+) (11)	NA	Q9M1V8	Putative protein phosphatase 2C 50	AT3G63320.1	Protein phosphatase 2C family protein 	LOC_Os11g37540.1	"protein phosphatase 2C, putative, expressed"	Medtr1g083780.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1364.5.A1_s_at	C	C1S	POPTR_0003s03450	POPTR_0003s03450 (0:298)	scaffold_1184:2079-2177(-) (9)//scaffold_3:3897317-3897456(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137473.2.A1_a_at	C	C1S	POPTR_0002s13910	POPTR_0002s13910 (0:979)	scaffold_2:10322717-10322887(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13799.1.A1_at	C	C1S	POPTR_0003s16180	POPTR_0003s16180 (0:81)	scaffold_3:15793256-15793592(+) (9)	NA	Q9LYU7	Inactive leucine-rich repeat receptor-like protein kinase CORYNE	AT5G13290.2	Protein kinase superfamily protein 	LOC_Os01g70260.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr7g020720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13863.1.A1_at	C	C1S	POPTR_0010s21290	POPTR_0010s21290 (0:178)	NA	NA	NA	NA	AT3G04020.1	unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os03g16870.2	expressed protein	Medtr7g025820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140462.1.A1_at	C	C1S	POPTR_0015s10070	POPTR_0015s10070 (0:1354)	scaffold_15:11110152-11110197(-) (11)	NA	NA	NA	AT2G04410.1	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr8g109980.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140514.1.A1_at	C	C1S	POPTR_0014s17860	POPTR_0014s17860 (0:1806)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141124.4.A1_a_at	C	C1S	POPTR_0001s38640	POPTR_0001s38640 (0:488)	scaffold_1:37818619-37818988(-) (11)	NA	Q32P51	Heterogeneous nuclear ribonucleoprotein A1-like 2	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g42820.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.14130.1.S1_at	C	C1S	POPTR_0011s09090	POPTR_0011s09090 (0:1976)	NA	NA	NA	NA	AT5G55510.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os12g33020.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr5g101760.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.142212.1.S1_at	C	C1S	POPTR_0016s07510	POPTR_0016s07510 (0:34)	scaffold_16:5387581-5387922(+) (9)	NA	Q42966	Bifunctional nitrilase/nitrile hydratase NIT4B	AT5G22300.1	nitrilase 4 	LOC_Os02g42350.1	"nitrilase, putative, expressed"	Medtr1g146400.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.142391.2.S1_at	C	C1S	POPTR_0005s05440	POPTR_0005s05440 (0:1406)	NA	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142595.1.A1_at	C	C1S	POPTR_0013s01900	POPTR_0013s01900 (0:129)	NA	NA	Q3E6S8	Putative protease Do-like 14	AT5G27660.1	Trypsin family protein with PDZ domain 	LOC_Os11g14170.1	"OsDegp12 - Putative Deg protease homologue, expressed"	Medtr7g138970.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidase S1C, HrtA/DegP2/Q/S "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.145326.1.A1_at	C	C1S	POPTR_0005s24930	POPTR_0005s24930 (0:766)	scaffold_5:23339214-23339615(+) (10)	NA	Q92383	DNA-3-methyladenine glycosylase 1	AT1G75230.2	DNA glycosylase superfamily protein 	LOC_Os05g50290.1	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	Medtr5g020230.1	HhH-GPD 	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
PtpAffx.145331.1.A1_at	C	C1S	POPTR_0013s12500	POPTR_0013s12500 (0:165)	NA	NA	NA	NA	AT3G54680.1	proteophosphoglycan-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145331.1.A1_s_at	C	C1S	POPTR_0013s12500	POPTR_0013s12500 (0:165)	scaffold_13:13162138-13162482(+) (11)	NA	NA	NA	AT3G54680.1	proteophosphoglycan-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1454.2.S1_a_at	C	C1A	POPTR_0001s27520	POPTR_0001s27520 (0:1797)	scaffold_1:26427091-26428553(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146878.3.A1_a_at	C	C1S	POPTR_0002s23110	POPTR_0002s23110 (0:350)	scaffold_14:16723831-16723979(+) (11)//scaffold_2:20545591-20545739(+) (11)	NA	NA	NA	AT1G65070.1	"DNA mismatch repair protein MutS, type 2 "	LOC_Os04g58410.3	"smr domain containing protein, expressed"	AC233659_25.1	"DNA mismatch repair MutS family protein, related AC233659.1 105343-104826 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146898.1.A1_at	C	C1S	POPTR_0009s05740	POPTR_0009s05740 (0:497)	NA	NA	Q38873	Calcium-dependent protein kinase 7	AT5G12480.1	calmodulin-domain protein kinase 7 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147010.1.A1_at	C	C1S	POPTR_0002s11550	POPTR_0002s11550 (0:133)	scaffold_2:8619673-8620094(-) (11)	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g56050.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.147365.1.A1_at	C	C1S	POPTR_0002s21000	POPTR_0002s21000 (0:2440)	scaffold_2:17317761-17318330(-) (11)	NA	NA	NA	AT3G62900.1	CW-type Zinc Finger 	LOC_Os03g22580.2	"CW-type Zinc Finger, putative, expressed"	Medtr7g130050.1	"Zinc finger, CW-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.148761.1.S1_at	C	C1S	POPTR_0011s01460	POPTR_0011s01460 (0:2236)	scaffold_11:1023235-1023550(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT4G22120.6	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.148994.1.S1_at	C	C2S	POPTR_0001s30250	POPTR_0857s00200 (0:2062)//POPTR_0001s30250 (0:2062)	scaffold_1:28757915-28758296(-) (10)//scaffold_857:4339-4726(+) (9)	NA	Q9XJ35	"ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic"	AT1G49970.1	CLP protease proteolytic subunit 1 	LOC_Os05g51450.1	"OsClp8 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15038.2.S1_a_at	C	C1S	POPTR_0002s00340	POPTR_0002s00340 (0:721)	scaffold_2:86244-86289(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15038.3.S1_a_at	C	C1S	POPTR_0002s00340	POPTR_0002s00340 (0:1498)	scaffold_2:86066-86148(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15086.1.S1_at	C	C1S	POPTR_0013s11880	POPTR_0013s11880 (0:457)	NA	NA	O67550	5'-3' exonuclease	AT1G34380.2	5'-3' exonuclease family protein 	LOC_Os01g65400.2	"DNA polymerase I, putative, expressed"	NA	NA	NA	GO:0008409|5'-3' exonuclease activity||GO:0003677|DNA binding	NA
PtpAffx.15086.2.A1_at	C	C1S	POPTR_0013s11880	POPTR_0013s11880 (0:126)	NA	NA	O67550	5'-3' exonuclease	AT1G34380.2	5'-3' exonuclease family protein 	LOC_Os01g65400.2	"DNA polymerase I, putative, expressed"	NA	NA	NA	GO:0008409|5'-3' exonuclease activity||GO:0003677|DNA binding	NA
PtpAffx.153433.1.A1_at	C	C1S	POPTR_0003s17400	POPTR_0003s17400 (0:112)	scaffold_3:16753618-16753909(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153531.1.A1_at	C	C2S	POPTR_0004s09810	POPTR_0004s09810 (0:42)//POPTR_0235s00210 (0:32)	NA	NA	NA	NA	AT2G18410.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g10460.1	expressed protein	Medtr5g079110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153636.1.A1_at	C	C1S	POPTR_0010s17460	POPTR_0010s17460 (0:27)	scaffold_10:16048894-16049362(+) (11)	NA	NA	NA	AT2G03050.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g57149.1	"mTERF domain containing protein, expressed"	Medtr5g044810.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153779.1.A1_at	C	C1A	POPTR_0010s15780	POPTR_0010s15780 (0:59)	scaffold_10:14894554-14894849(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153796.1.A1_at	C	C1S	POPTR_0005s17020	POPTR_0005s17020 (0:25)	scaffold_5:14053355-14053643(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os03g27030.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.154133.2.S1_at	C	C1S	POPTR_0009s15800	POPTR_0009s15800 (0:118)	NA	NA	NA	NA	AT5G12230.1	MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g44010.2	"nucleolar protein NOP5, putative, expressed"	AC233651_17.1	"TRAF3-interacting protein 1, related AC233651.1 53447-51580 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155154.1.S1_at	C	C1S	POPTR_0002s11540	POPTR_0002s11540 (0:46)	scaffold_2:8599672-8599948(-) (9)	NA	Q6NKN9	Transcription factor bHLH74	AT1G10120.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os06g16400.2	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g077090.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.155368.1.S1_at	C	C1S	POPTR_0007s05370	POPTR_0007s05370 (0:653)	NA	NA	Q8VCN9	Tubulin-specific chaperone C	AT4G39920.1	C-CAP/cofactor C-like domain-containing protein 	LOC_Os02g35110.1	"tubulin binding cofactor C, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159631.1.A1_at	C	C1S	POPTR_0006s14430	POPTR_0006s14430 (1:430)	NA	NA	NA	NA	AT2G06010.1	OBP3-responsive gene 4 	LOC_Os04g36850.1	"ORG4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159818.1.A1_at	C	C1S	POPTR_0003s13480	POPTR_0003s13480 (0:0)	scaffold_3:13858101-13858299(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT5G41620.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g15980.1	expressed protein	Medtr5g009870.1	"Uncharacterized protein At5g41620, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159819.1.A1_a_at	C	C1A	POPTR_0019s07650	POPTR_0019s07650 (0:359)	scaffold_19:8733963-8734129(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160224.1.A1_at	C	C1S	POPTR_0004s03730	POPTR_0004s03730 (0:745)	scaffold_4:2609027-2609102(+) (11)	NA	NA	NA	AT1G11125.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1). 	NA	NA	Medtr2g014420.1	"CK25, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160227.1.A1_at	C	C1S	POPTR_0013s13040	POPTR_0013s13040 (0:187)	NA	NA	NA	NA	AT5G60030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr1g020400.1	"AGAP002737-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160247.1.A1_at	C	C1S	POPTR_0016s13200	POPTR_0016s13200 (0:317)	scaffold_16:12445962-12446231(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160559.1.A1_at	C	C1A	POPTR_0005s07010	POPTR_0005s07010 (0:169)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16140.1.S1_at	C	C1S	POPTR_0010s22480	POPTR_0010s22480 (0:15)	NA	NA	Q9FT52	"ATP synthase subunit d, mitochondrial"	AT3G52300.1	"ATP synthase D chain, mitochondrial "	LOC_Os08g37320.1	expressed protein	Medtr1g122040.1	"ATP synthase D chain, mitochondrial, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16155.1.S1_at	C	C1S	POPTR_0001s13500	POPTR_0001s13500 (0:742)	scaffold_1:10575220-10575608(-) (11)	NA	Q9LSD5	Transcription factor TCP20	AT3G27010.1	"TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 "	LOC_Os01g69980.1	"TCP family transcription factor, putative, expressed"	Medtr7g018180.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162015.1.A1_at	C	C1S	POPTR_0001s29470	POPTR_0001s29470 (0:213)	NA	NA	NA	NA	AT4G17000.1	unknown protein; Has 2862 Blast hits to 2331 proteins in 349 species: Archae - 6; Bacteria - 408; Metazoa - 833; Fungi - 223; Plants - 134; Viruses - 7; Other Eukaryotes - 1251 (source: NCBI BLink). 	LOC_Os03g56070.1	expressed protein	Medtr2g010530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16297.1.A1_at	C	C1S	POPTR_0014s08120	POPTR_0014s08120 (0:498)	scaffold_14:6022560-6022801(-) (9)	NA	Q8LF97	SKP1-like protein 21	AT3G61415.1	SKP1-like 21 	LOC_Os03g01660.1	"SKP1, putative, expressed"	Medtr8g031960.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.163079.1.S1_at	C	C1S	POPTR_0001s26110	POPTR_0001s26110 (0:1320)	scaffold_1:25193781-25194044(+) (11)	NA	Q9SIU2	Nuclear cap-binding protein subunit 1	AT2G13540.1	ARM repeat superfamily protein 	LOC_Os03g22570.1	"MIF4G domain containing protein, putative, expressed"	Medtr7g096860.1	"Initiation factor eIF-4 gamma, middle; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.17770.1.A1_a_at	C	C1A	POPTR_0018s10420	POPTR_0018s10420 (0:185)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.178.1.S1_at	C	C1S	POPTR_0002s22460	POPTR_0002s22460 (0:4164)	scaffold_2:19208947-19209328(+) (9)	NA	Q9ZT91	"Elongation factor Tu, mitochondrial"	AT4G02930.1	GTP binding Elongation factor Tu family protein 	LOC_Os03g63410.1	"elongation factor Tu, putative, expressed"	Medtr3g115100.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.18631.1.A1_at	C	C1S	POPTR_0010s10580	POPTR_0010s10580 (0:76)	scaffold_10:11077008-11077304(+) (9)	NA	NA	NA	AT1G24040.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os04g39140.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr5g036340.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.18745.1.S1_at	C	C1S	POPTR_0003s12430	POPTR_0003s12430 (0:4005)	scaffold_3:13000343-13000671(-) (10)	NA	Q9JZ44	30S ribosomal protein S1	AT1G12800.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os02g02390.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g104300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.19408.2.S1_at	C	C1S	POPTR_0010s06820	POPTR_0010s06820 (0:1716)	scaffold_10:8092573-8092949(+) (11)	NA	Q9LIP2	Proteasome subunit beta type-5-B	AT3G26340.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os06g06030.1	"peptidase, T1 family, putative, expressed"	Medtr3g117480.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.200374.1.S1_at	C	C1S	POPTR_0001s10520	POPTR_0001s10520 (0:982)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200477.1.S1_at	C	C1S	POPTR_0001s08160	POPTR_0001s08160 (0:333)	scaffold_1:6220734-6220824(-) (11)	NA	Q8K0H1	Multidrug and toxin extrusion protein 1	AT4G22790.1	MATE efflux family protein 	LOC_Os03g64150.1	"MATE efflux family protein, putative, expressed"	Medtr5g011710.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.200496.1.S1_at	C	C1S	POPTR_0001s17380	POPTR_0001s17380 (0:2668)	scaffold_1:14187525-14187725(+) (11)	NA	NA	NA	AT4G32440.1	Plant Tudor-like RNA-binding protein 	LOC_Os02g11000.2	"agenet domain containing protein, putative, expressed"	Medtr8g119470.1	ENT; Agenet 	NA	GO:0003723|RNA binding	NA
PtpAffx.200558.1.S1_at	C	C1S	POPTR_0001s22070	POPTR_0001s22070 (0:1487)	scaffold_1:20690936-20690982(+) (10)	NA	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.2	Serine carboxypeptidase S28 family protein 	LOC_Os11g05760.1	"OsProCP5 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.200625.1.S1_at	C	C1A	POPTR_0001s18460	POPTR_0001s18460 (0:694)	scaffold_1:15517899-15518134(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200628.1.S1_at	C	C4A	POPTR_0001s18520	POPTR_0002s25460 (0:829)//POPTR_0016s09920 (0:784)//POPTR_0010s01520 (0:113)//POPTR_0001s18520 (0:113)	scaffold_1:15581843-15582021(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200628.1.S1_s_at	C	C4A	POPTR_0001s18520	POPTR_0002s25460 (0:829)//POPTR_0016s09920 (0:784)//POPTR_0010s01520 (0:113)//POPTR_0001s18520 (0:113)	scaffold_1:15581869-15581922(+) (11)//scaffold_10:1704451-1704504(+) (10)//scaffold_11:742858-742911(+) (11)//scaffold_16:7999702-7999755(-) (10)//scaffold_17:7986924-7986977(-) (11)//scaffold_2:22525256-22525309(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200628.1.S1_x_at	C	C4A	POPTR_0001s18520	POPTR_0002s25460 (0:829)//POPTR_0016s09920 (0:784)//POPTR_0010s01520 (0:113)//POPTR_0001s18520 (0:113)	scaffold_1:15581843-15582031(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.200674.1.S1_at	C	C1A	POPTR_0001s22150	POPTR_0001s22150 (0:164)	scaffold_1:20795805-20796215(+) (9)	NA	NA	NA	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201002.1.S1_at	C	C1S	POPTR_0001s36150	POPTR_0001s36150 (0:425)	scaffold_1:34654761-34655200(+) (10)	NA	NA	NA	AT3G27310.1	plant UBX domain-containing protein 1 	LOC_Os04g40870.1	"alveolar soft part sarcoma chromosome region, candidate 1, putative, expressed"	Medtr6g024990.1	UBX 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201124.1.S1_at	C	C1S	POPTR_0001s31870	POPTR_0001s31870 (0:2721)	NA	NA	Q1DXH0	"Polyadenylate-binding protein, cytoplasmic and nuclear"	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.201131.1.S1_at	C	C1S	POPTR_0001s31730	POPTR_0001s31730 (0:1052)	scaffold_1:30129557-30129822(+) (10)	NA	Q6BQ20	Autophagy-related protein 13	AT3G18770.1	Autophagy-related protein 13 	LOC_Os11g06320.1	expressed protein	Medtr3g144100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201869.1.S1_at	C	C1S	POPTR_0002s08520	POPTR_0002s08520 (0:998)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.201887.1.S1_at	C	C1S	POPTR_0002s09020	POPTR_0002s09020 (0:808)	scaffold_2:6383667-6384094(-) (11)	NA	NA	NA	AT1G36940.1	unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20200.1.S1_at	C	C2S	POPTR_0010s17120	POPTR_0010s17130 (0:1263)//POPTR_0010s17120 (0:380)	scaffold_10:15850909-15851557(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20219.3.A1_at	C	C1S	POPTR_0017s01500	POPTR_0017s01500 (0:343)	scaffold_17:1031794-1032037(-) (11)	NA	Q80SY5	Pre-mRNA-splicing factor 38B	AT5G37370.1	PRP38 family protein 	LOC_Os05g08600.2	"splicing factor, putative, expressed"	Medtr5g085030.1	PRP38 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202641.1.S1_at	C	C1S	POPTR_0002s24010	POPTR_0002s24010 (0:788)	scaffold_2:21493752-21494153(+) (11)	NA	NA	NA	AT3G07480.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os09g33950.1	"ferredoxin 1-like isoform 1, putative, expressed"	Medtr7g046710.1	2Fe-2S Ferredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202792.1.S1_at	C	C1A	POPTR_0074s00220	POPTR_0074s00220 (0:8)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202848.1.S1_at	C	C1A	POPTR_0027s00350	POPTR_0027s00350 (0:55)	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT1G58190.1	receptor like protein 9 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.202895.1.S1_at	C	C1A	POPTR_0003s06280	POPTR_0003s06280 (0:53)	scaffold_3:7743596-7744585(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.202921.1.S1_at	C	C1A	POPTR_0003s05700	POPTR_0003s05700 (0:276)	scaffold_3:7092246-7092701(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20305.1.A1_at	C	C2S	POPTR_0018s06570	POPTR_0018s06570 (0:622)//POPTR_0018s06580 (0:502)	NA	NA	O95372	Acyl-protein thioesterase 2	AT5G20060.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g07960.3	"acyl-protein thioesterase, putative, expressed"	Medtr3g136590.1	Phospholipase/Carboxylesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.203122.1.S1_at	C	C1S	POPTR_0003s10160	POPTR_0003s10160 (0:7)	scaffold_3:11265720-11266023(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.20320.1.A1_s_at	C	C2S	POPTR_0016s06450	POPTR_0016s06460 (0:504)//POPTR_0016s06450 (0:123)	scaffold_16:4343174-4343680(+) (11)	NA	Q7XZZ3	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT2G38920.2	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related 	LOC_Os03g44810.2	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203215.1.S1_at	C	C1S	POPTR_0003s12180	POPTR_0003s12180 (0:1521)	scaffold_3:12852187-12852694(+) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT5G62090.2	SEUSS-like 2 	LOC_Os06g03600.3	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203352.1.S1_at	C	C1S	POPTR_0003s15510	POPTR_0003s15510 (0:3915)	scaffold_3:15260941-15261884(+) (11)	NA	NA	NA	AT2G34920.1	RING/U-box superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203490.1.S1_at	C	C1S	POPTR_0003s18360	POPTR_0003s18360 (0:386)	scaffold_3:17469066-17469198(-) (9)	NA	Q9S9M8	Tubby-like protein 8	AT1G16070.1	tubby like protein 8 	NA	NA	AC233655_35.1	Tubby AC233655.2 211279-212971 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203752.1.S1_at	C	C1S	POPTR_0004s03430	POPTR_0004s03430 (0:937)	scaffold_4:2362039-2363044(-) (9)	NA	Q8VDM6	Heterogeneous nuclear ribonucleoprotein U-like protein 1	NA	NA	LOC_Os04g54350.1	"SPRY-domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.203832.1.S1_at	C	C1S	POPTR_0004s05610	POPTR_0004s05610 (0:675)	scaffold_4:4372071-4372654(+) (11)	NA	NA	NA	AT2G42610.2	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g111640.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204080.1.S1_at	C	C1S	POPTR_0004s13320	POPTR_0004s13320 (0:170)	scaffold_4:12921769-12921904(+) (11)	NA	Q948R1	"Phospholipase A(1) DAD1, chloroplastic"	AT2G44810.1	alpha/beta-Hydrolases superfamily protein 	NA	NA	Medtr7g093240.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2042.1.S1_at	C	C2S	POPTR_0003s01540	POPTR_0003s01540 (0:801)//POPTR_0133s00220 (0:339)	scaffold_3:1401914-1405866(+) (9)	NA	NA	NA	AT5G24750.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g11940.1	"sterol glucosyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204575.1.S1_at	C	C1S	POPTR_0009s12730	POPTR_0009s12730 (0:1728)	scaffold_9:10334386-10334672(-) (9)	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT4G38960.1	B-box type zinc finger family protein 	LOC_Os09g35880.1	"B-box zinc finger family protein, putative, expressed"	Medtr5g021510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.204607.1.S1_at	C	C1S	POPTR_0009s12120	POPTR_0009s12120 (0:2000)	scaffold_9:9942840-9943293(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204730.1.S1_at	C	C1S	POPTR_0009s09130	POPTR_0009s09130 (0:1202)	scaffold_9:8182746-8183053(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g21020.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.204800.1.S1_at	C	C1S	POPTR_0009s07680	POPTR_0009s07680 (0:2701)	scaffold_9:7122316-7124146(+) (10)	NA	NA	NA	AT5G58610.1	"PHD finger transcription factor, putative "	LOC_Os07g49290.1	"PHD finger family protein, putative, expressed"	Medtr5g079630.1	"Zinc finger, RING-type; Agenet; Zinc finger, FYVE/PHD-type; "	NA	GO:0003723|RNA binding	NA
PtpAffx.204921.1.S1_at	C	C1S	POPTR_0009s04760	POPTR_0009s04760 (0:2477)	scaffold_9:5027197-5028058(-) (11)	NA	NA	NA	AT5G17910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1). 	LOC_Os01g59670.1	expressed protein	Medtr7g104360.2	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205129.1.S1_at	C	C1S	POPTR_0005s06570	POPTR_0005s06570 (0:737)	scaffold_5:4388859-4389509(+) (10)//scaffold_5:4415345-4415995(+) (10)	NA	NA	NA	AT1G76980.1	BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). 	NA	NA	Medtr3g143160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205292.1.S1_at	C	C1S	POPTR_0005s10340	POPTR_0005s10340 (0:3246)	scaffold_5:7414921-7415291(+) (11)	NA	P25819	Catalase-2	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
PtpAffx.205396.1.S1_at	C	C1S	POPTR_0005s19150	POPTR_0005s19150 (0:1173)	scaffold_5:17747741-17752729(-) (10)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.1	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g009860.1	Methylmalonate-semialdehyde dehydrogenase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205410.1.S1_at	C	C1S	POPTR_0005s19370	POPTR_0005s19370 (0:542)	scaffold_5:18177257-18177441(+) (9)	NA	Q9SUG3	Inositol-tetrakisphosphate 1-kinase 2	AT4G08170.2	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os03g12840.2	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr5g005520.1	"Ribosomal protein L19; Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.205727.1.S1_at	C	C1A	POPTR_0005s23790	POPTR_0005s23790 (0:529)	scaffold_5:22536741-22538359(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205838.1.S1_at	C	C1S	POPTR_0005s26330	POPTR_0005s26330 (0:3)	scaffold_5:24406071-24406228(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205915.1.S1_at	C	C1A	POPTR_0006s00270	POPTR_0006s00270 (0:338)	NA	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr2g033600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205915.1.S1_x_at	C	C1A	POPTR_0006s00270	POPTR_0006s00270 (0:338)	scaffold_6:51671-53742(+) (9)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr2g033600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.205976.1.S1_at	C	C1S	POPTR_0006s01530	POPTR_0006s01530 (0:1553)	NA	NA	C0LGW6	LRR receptor-like serine/threonine-protein kinase ERL1	AT5G40170.1	receptor like protein 54 	LOC_Os11g31550.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr2g118400.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.206036.1.S1_s_at	C	C1S	POPTR_0006s03040	POPTR_0006s03040 (0:7858)	scaffold_6:1934792-1934979(+) (9)	NA	Q62383	Transcription elongation factor SPT6	AT1G65440.2	global transcription factor group B1 	LOC_Os05g41510.1	"SH2 motif, putative, expressed"	Medtr7g105590.1	"Alcohol dehydrogenase, zinc-containing; RNA binding S1; Resolvase, RNase H-like fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206041.1.S1_at	C	C1S	POPTR_0006s03220	POPTR_0006s03220 (0:257)	scaffold_6:2039122-2039631(-) (10)	NA	Q8RVH5	Basic 7S globulin 2	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206062.1.S1_at	C	C1A	POPTR_0006s03710	POPTR_0006s03710 (0:482)	scaffold_6:2474628-2474942(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206173.1.S1_at	C	C1A	POPTR_0006s07120	POPTR_0006s07120 (0:11)	scaffold_6:5117215-5117816(+) (10)	NA	NA	NA	NA	NA	LOC_Os04g56405.1	expressed protein	Medtr8g130390.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.206416.1.S1_at	C	C1A	POPTR_0006s22010	POPTR_0006s22010 (0:34)	NA	NA	Q9CAF2	"Nudix hydrolase 26, chloroplastic"	AT3G10620.1	nudix hydrolase homolog 26 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.206938.1.S1_at	C	C1S	POPTR_0007s01690	POPTR_0007s01690 (0:3195)	NA	NA	O04153	Calreticulin-3	AT1G08450.1	calreticulin 3 	LOC_Os05g43170.1	"calreticulin precursor protein, putative, expressed"	Medtr7g089980.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
PtpAffx.207135.1.S1_at	C	C1S	POPTR_0007s06280	POPTR_0007s06280 (0:316)	scaffold_7:4435814-4435954(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207282.1.S1_x_at	C	C1S	POPTR_0007s11390	POPTR_0007s11390 (0:2038)	NA	NA	Q9C566	Peptidyl-prolyl cis-trans isomerase CYP40	AT2G15790.1	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase 	LOC_Os06g11320.2	"peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed"	Medtr4g129080.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.207610.1.S1_at	C	C1S	POPTR_0008s03380	POPTR_0008s03380 (0:185)	scaffold_8:1791661-1792128(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207636.1.S1_at	C	C1S	POPTR_0010s23070	POPTR_0010s23070 (0:717)	scaffold_8:2083586-2083887(+) (11)	NA	NA	NA	AT2G38970.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g56280.1	"zinc finger family protein, putative, expressed"	Medtr1g120670.1	"Zinc finger, RING-type; von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207667.1.S1_at	C	C1S	POPTR_0008s04710	POPTR_0008s04710 (0:3950)	scaffold_8:2704263-2705593(-) (10)	NA	P94026	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT3G55080.1	SET domain-containing protein 	LOC_Os01g74500.1	conserved hypothetical protein	Medtr1g146280.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.207873.1.S1_at	C	C1S	POPTR_0008s09020	POPTR_0008s09020 (0:2437)	scaffold_8:5597157-5597226(+) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G26690.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.208205.1.S1_at	C	C1S	POPTR_0008s16940	POPTR_0008s16940 (0:1442)	scaffold_8:11391660-11391742(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208223.1.S1_at	C	C1A	POPTR_0008s17360	POPTR_0008s17360 (0:100)	scaffold_5:399892-400391(+) (9)//scaffold_988:4037-4536(-) (10)	NA	Q9SN39	"Pentatricopeptide repeat-containing protein At4g18750, chloroplastic"	AT4G18750.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os07g25500.1	"pentatricopeptide, putative, expressed"	Medtr1g087400.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208431.1.S1_at	C	C1S	POPTR_0010s00490	POPTR_0010s00490 (0:4405)	NA	NA	Q8RWC9	CBL-interacting serine/threonine-protein kinase 1	AT3G17510.2	CBL-interacting protein kinase 1 	LOC_Os01g18800.1	"CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g052930.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.208473.1.S1_at	C	C4A	POPTR_0001s18520	POPTR_0002s25460 (0:1142)//POPTR_0016s09920 (0:971)//POPTR_0010s01520 (0:300)//POPTR_0001s18520 (0:300)	scaffold_10:1705004-1705156(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.208598.1.S1_at	C	C1S	POPTR_0010s07420	POPTR_0010s07420 (0:143)	scaffold_10:8480978-8481290(+) (11)	NA	Q12486	Putative uncharacterized hydrolase YOR131C	AT2G33255.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os02g57100.1	expressed protein	Medtr1g087430.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.208958.1.S1_at	C	C1S	POPTR_0010s13680	POPTR_0010s13680 (0:35)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209097.1.S1_x_at	C	C1S	POPTR_0010s16050	POPTR_0010s16050 (0:504)	scaffold_10:15107183-15107346(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209407.1.S1_at	C	C1S	POPTR_0010s23070	POPTR_0010s23070 (0:717)	scaffold_10:19744847-19745231(-) (11)	NA	NA	NA	AT2G38970.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g56280.1	"zinc finger family protein, putative, expressed"	Medtr1g120670.1	"Zinc finger, RING-type; von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209477.1.S1_at	C	C2S	POPTR_0010s25540	POPTR_0010s25560 (0:805)//POPTR_0010s25540 (0:83)	NA	NA	Q9LSG3	Galacturonosyltransferase 8	AT3G25140.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g49810.1	"glycosyl transferase family 8, putative, expressed"	Medtr7g083410.1	"Glycosyl transferase, family 8 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209497.1.S1_at	C	C1S	POPTR_0010s25240	POPTR_0010s25240 (0:1065)	scaffold_10:21008510-21008908(-) (11)	NA	P98204	Phospholipid-transporting ATPase 1	AT5G04930.1	aminophospholipid ATPase 1 	LOC_Os03g20949.1	"phospholipid-transporting ATPase, putative, expressed"	Medtr3g008480.2	"ATPase, E1-E2 type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209594.1.S1_at	C	C1S	POPTR_0021s00460	POPTR_0021s00460 (0:89)	scaffold_21:155100-155587(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209623.1.S1_at	C	C2S	POPTR_0011s01500	POPTR_0011s01510 (0:1423)//POPTR_0011s01500 (0:1305)	scaffold_11:1056227-1057597(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209660.1.S1_at	C	C4A	POPTR_0001s18520	POPTR_0002s25460 (0:1142)//POPTR_0016s09920 (0:971)//POPTR_0010s01520 (0:300)//POPTR_0001s18520 (0:300)	scaffold_11:742759-743353(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209720.1.S1_at	C	C1S	POPTR_0011s04340	POPTR_0011s04340 (0:5228)	scaffold_11:4356975-4358109(+) (9)	NA	Q5CCK4	B3 domain-containing transcription repressor VAL2	AT4G21550.1	VP1/ABI3-like 3 	LOC_Os07g37610.1	"B3 DNA binding domain containing protein, putative, expressed"	Medtr2g014020.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.209724.1.S1_at	C	C1S	POPTR_0011s04250	POPTR_0011s04250 (0:409)	scaffold_11:4266978-4267720(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g54350.1	"SPRY-domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.209892.1.S1_at	C	C1S	POPTR_0012s01890	POPTR_0012s01890 (0:905)	scaffold_11:7902013-7902924(-) (10)	NA	Q91DM0	Genome polyprotein	NA	NA	LOC_Os08g18210.1	"retrotransposon protein, putative, unclassified"	AC234026_1.1	RNA-directed DNA polymerase (Reverse transcriptase) AC234026.1 2154-4412 H EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006278|RNA-dependent DNA replication	GO:0003964|RNA-directed DNA polymerase activity||GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.210377.1.S1_at	C	C1S	POPTR_0012s00340	POPTR_0012s00340 (0:1090)	scaffold_12:96733-97066(-) (11)//scaffold_3:17063751-17064029(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.210521.1.S1_at	C	C1S	POPTR_0012s07290	POPTR_0012s07290 (0:4393)	scaffold_12:8144083-8144128(-) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT5G62710.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g44090.1	"leucine-rich repeat family protein, putative, expressed"	Medtr8g113060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.210567.1.S1_at	C	C1S	POPTR_0012s08220	POPTR_0012s08220 (0:4342)	NA	NA	NA	NA	AT5G62810.1	peroxin 14 	LOC_Os01g01720.1	"pex14, putative, expressed"	Medtr8g125610.1	Peroxisomal membrane anchor protein (Pex14p) 	NA	NA	GO:0005777|peroxisome||GO:0016020|membrane
PtpAffx.210595.1.S1_at	C	C1S	POPTR_0012s08810	POPTR_0012s08810 (0:203)	scaffold_12:9869586-9879126(-) (9)	NA	NA	NA	NA	NA	LOC_Os01g68430.1	"transposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210650.1.S1_at	C	C1S	POPTR_0012s10000	POPTR_0012s10000 (0:1015)	scaffold_12:10886646-10886709(+) (9)	NA	NA	NA	AT4G24900.1	unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os09g32940.1	expressed protein	Medtr2g052660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210845.1.S1_at	C	C1S	POPTR_0013s00850	POPTR_0013s00850 (0:831)	scaffold_13:424502-424842(-) (11)	NA	NA	NA	AT1G56580.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.210909.1.S1_at	C	C1S	POPTR_0013s02230	POPTR_0013s02230 (0:5590)	NA	NA	Q09795	Uncharacterized peptidase C22G7.01c	AT3G05350.1	Metallopeptidase M24 family protein 	LOC_Os07g10540.2	"peptidase, M24 family protein, putative, expressed"	Medtr7g139250.1	"Creatinase; Peptidase M24; Peptidase aspartic, active site "	GO:0009987|cellular process	GO:0016787|hydrolase activity	NA
PtpAffx.210962.1.S1_s_at	C	C1S	POPTR_0006s21900	POPTR_0006s21900 (0:128)	scaffold_1:22662002-22662080(-) (11)//scaffold_1:29705943-29705993(-) (9)//scaffold_1:48194511-48194589(-) (11)//scaffold_1:48202095-48202173(-) (11)//scaffold_11:1346488-1346566(-) (11)//scaffold_11:8587818-8587896(+) (11)//scaffold_1271:106-184(+) (11)//scaffold_13:2070358-2070436(-) (11)//scaffold_13:2205569-2205647(-) (11)//scaffold_17:3201722-3201800(+) (11)//scaffold_17:14256464-14256542(+) (11)//scaffold_186:24519-24569(+) (9)//scaffold_19:3207142-3207220(-) (11)//scaffold_19:3214854-3214932(-) (11)//scaffold_19:10371815-10371893(-) (10)//scaffold_19:13899783-13899861(-) (11)//scaffold_2:10963028-10963106(+) (11)//scaffold_30:3873-3951(-) (11)//scaffold_371:9979-10057(-) (11)//scaffold_371:17285-17363(-) (11)//scaffold_403:3767-3845(+) (11)//scaffold_6:20860316-20860394(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211051.1.S1_a_at	C	C2S	POPTR_0013s05090	POPTR_0013s05100 (0:1185)//POPTR_0013s05090 (0:969)	scaffold_13:3602076-3602158(+) (11)//scaffold_13:3602259-3602341(+) (11)	NA	NA	NA	AT2G39050.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os07g48500.1	"stress responsive protein, putative, expressed"	Medtr7g100110.1	"glycoamidase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211280.1.S1_at	C	C1S	POPTR_0013s09530	POPTR_0013s09530 (0:623)	NA	NA	Q8H6H4	Inorganic phosphate transporter 1-1	AT5G43360.1	phosphate transporter 1;3 	LOC_Os03g05620.1	"inorganic phosphate transporter, putative, expressed"	Medtr5g076920.1	Major facilitator superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211308.1.S1_at	C	C2S	POPTR_0013s13990	POPTR_0013s14000 (0:2198)//POPTR_0013s13990 (0:2198)	scaffold_13:14297237-14305725(+) (10)	NA	Q9LEL6	(RS)-norcoclaurine 6-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os05g43930.1	"O-methyltransferase, putative, expressed"	Medtr4g047310.1	"Blue (type 1) copper domain; O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.211431.1.S1_at	C	C1A	POPTR_0014s01550	POPTR_0014s01550 (0:275)	scaffold_14:1473384-1474045(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211479.1.S1_at	C	C1A	POPTR_0014s06810	POPTR_0014s06810 (0:185)	scaffold_14:5119684-5119754(-) (11)//scaffold_14:5130055-5130125(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g151050.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211549.1.S1_at	C	C1S	POPTR_0014s08180	POPTR_0014s08180 (0:2084)	scaffold_14:6071002-6071145(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.2	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211791.1.S1_at	C	C1A	POPTR_0014s13190	POPTR_0014s13190 (0:277)	scaffold_14:9717899-9718381(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2118.2.A1_at	C	C1S	POPTR_0002s15080	POPTR_0002s15080 (0:350)	scaffold_2:11179450-11180102(-) (9)	NA	Q9H8Y5	Ankyrin repeat and zinc finger domain-containing protein 1	AT1G01930.1	zinc finger protein-related 	LOC_Os04g48520.1	"ZOS4-12 - C2H2 zinc finger protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211827.1.S1_at	C	C1S	POPTR_0014s14130	POPTR_0014s14130 (0:7711)	scaffold_14:10350740-10350903(+) (11)	NA	NA	NA	AT3G19340.1	Protein of unknown function (DUF3754) 	LOC_Os12g29550.1	expressed protein	Medtr7g097260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.211897.1.S1_at	C	C2S	POPTR_0002s22120	POPTR_0014s15970 (0:1837)//POPTR_0002s22120 (0:1820)	scaffold_14:12054619-12055131(+) (11)	NA	Q98SJ2	DAZ-associated protein 1	AT3G07810.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g105300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.211962.1.S1_at	C	C1S	POPTR_0014s17300	POPTR_0014s17300 (0:374)	scaffold_14:13433412-13433452(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212446.1.S1_at	C	C1S	POPTR_0019s12920	POPTR_0019s12920 (0:2611)	scaffold_19:13963172-13963338(+) (11)	NA	O82500	Putative disease resistance protein At4g11170	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr2g121090.1	Disease resistance protein 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.212461.1.S1_at	C	C2S	POPTR_0019s15130	POPTR_0019s15130 (0:7646)//POPTR_0019s15140 (0:296)	scaffold_19:15730781-15730931(+) (11)	NA	Q6CIV2	ATP-dependent RNA helicase DBP2	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g19530.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.212550.1.S1_at	C	C1S	POPTR_0015s00940	POPTR_0015s00940 (0:915)	scaffold_15:549095-549680(-) (10)	NA	O49255	NAC domain-containing protein 29	AT2G33480.1	NAC domain containing protein 41 	LOC_Os03g02800.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.212631.1.S1_s_at	C	C1S	POPTR_0015s06180	POPTR_0015s06180 (0:104)	NA	NA	NA	NA	AT5G24130.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g15740.1	expressed protein	Medtr3g124560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212707.1.S1_at	C	C1S	POPTR_0015s04550	POPTR_0015s04550 (0:1521)	scaffold_15:4698842-4699008(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212911.1.S1_at	C	C1S	POPTR_0015s11440	POPTR_0015s11440 (0:6711)	NA	NA	NA	NA	AT3G48770.1	DNA binding;ATP binding 	LOC_Os11g31480.1	"ATP binding protein, putative, expressed"	Medtr8g011570.1	"Proteinase inhibitor I3, Kunitz legume; ATP-binding region, ATPase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.212993.1.S1_at	C	C1S	POPTR_0036s00270	POPTR_0036s00270 (0:440)	scaffold_36:268841-269314(+) (11)	NA	Q9SA16	Protein PHLOEM PROTEIN 2-LIKE A9	AT1G31200.1	phloem protein 2-A9 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213090.1.S1_at	C	C1S	POPTR_0015s13130	POPTR_0015s13130 (0:1695)	NA	NA	Q04980	Low-temperature-induced 65 kDa protein	AT5G52300.2	CAP160 protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213090.1.S1_s_at	C	C1S	POPTR_0015s13130	POPTR_0015s13130 (0:1695)	scaffold_15:13209826-13210907(-) (11)	NA	Q04980	Low-temperature-induced 65 kDa protein	AT5G52300.2	CAP160 protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213210.1.S1_at	C	C1S	POPTR_0016s02830	POPTR_0016s02830 (0:500)	scaffold_16:1403235-1403782(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g02180.1	"3-5 exonuclease domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213472.1.S1_at	C	C1S	POPTR_0016s08400	POPTR_0016s08400 (0:13897)	scaffold_16:6202418-6202619(-) (9)	NA	NA	NA	AT1G07910.2	RNAligase 	LOC_Os07g09400.1	"RNA ligase isoform 1, putative, expressed"	Medtr4g080500.1	"RNA ligase isoform 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213518.1.S1_at	C	C1S	POPTR_0016s09580	POPTR_0016s09580 (0:7933)	scaffold_16:7494000-7494250(-) (11)	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.213678.1.S1_at	C	C1S	POPTR_0064s00220	POPTR_0064s00220 (0:2486)	NA	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os12g11930.1	"disease resistance protein SlVe2 precursor, putative, expressed"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.213762.1.S1_at	C	C1S	POPTR_0017s04220	POPTR_0017s04220 (0:365)	scaffold_17:3251902-3252309(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g02680.1	"protein kinase domain containing protein, expressed"	Medtr6g044100.1	C4-dicarboxylate transporter/malic acid transport protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213782.1.S1_at	C	C1S	POPTR_0289s00200	POPTR_0289s00200 (0:242)	scaffold_289:5792-6455(+) (10)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.1	Cysteine proteinases superfamily protein 	LOC_Os05g11770.2	"ulp1 protease family protein, putative, expressed"	Medtr3g149330.2	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.213813.1.S1_at	C	C1S	POPTR_0017s07700	POPTR_0017s07700 (0:596)	scaffold_17:5978864-5979350(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214070.1.S1_x_at	C	C1A	POPTR_0003s05320	POPTR_0003s05320 (0:224)	scaffold_18:4616510-4616773(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214302.1.S1_at	C	C1S	POPTR_0018s06420	POPTR_0018s06420 (0:1200)	scaffold_18:6337873-6338058(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214420.1.S1_at	C	C1S	POPTR_0018s10720	POPTR_0018s10720 (0:715)	scaffold_18:11600538-11601030(-) (11)	NA	Q9ZV51	RING-H2 finger protein ATL56	AT2G18670.1	RING/U-box superfamily protein 	LOC_Os02g50990.3	"RING-H2 finger protein ATL1Q, putative, expressed"	Medtr8g127780.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214565.1.S1_at	C	C1S	POPTR_0018s12720	POPTR_0018s12720 (0:707)	scaffold_18:13238658-13238732(+) (11)	NA	O22845	Calmodulin-like protein 5	AT2G43290.1	Calcium-binding EF-hand family protein 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g121290.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214929.1.S1_at	C	C1S	POPTR_2249s00200	POPTR_2249s00200 (0:182)	scaffold_2249:2207-2744(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.214929.1.S1_x_at	C	C1S	POPTR_2249s00200	POPTR_2249s00200 (0:182)	scaffold_2249:2207-2744(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215017.1.S1_at	C	C2S	POPTR_0002s18370	POPTR_0002s18370 (0:374)//POPTR_0002s18390 (0:374)	scaffold_2:14329039-14338982(-) (10)//scaffold_2:14338733-14338971(-) (9)	NA	Q8VZE4	Pentatricopeptide repeat-containing protein At4g01570	AT4G01570.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g50500.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015060.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215176.1.S1_x_at	C	C3S	POPTR_0008s21630	POPTR_0010s03755 (0:978)//POPTR_0008s21630 (0:758)//POPTR_0009s00560 (0:751)	scaffold_15:1785255-1785479(+) (9)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.215305.1.S1_at	C	C1S	POPTR_0006s18270	POPTR_0006s18270 (0:755)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215305.1.S1_x_at	C	C1S	POPTR_0006s18270	POPTR_0006s18270 (1:755)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215668.1.S1_at	C	C1S	POPTR_0001s00450	POPTR_0001s00450 (0:1884)	scaffold_1:353288-354537(+) (9)	NA	NA	NA	AT4G16510.1	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g44330.1	"rho guanine nucleotide exchange factor, putative, expressed"	Medtr8g105950.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.215867.1.S1_at	C	C1S	POPTR_0005s00350	POPTR_0005s00350 (0:2273)	scaffold_5:107345-107526(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g102990.1	"mucin 2, intestinal/tracheal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216084.1.S1_at	C	C2S	POPTR_0015s00355	POPTR_1538s00200 (0:287)//POPTR_0015s00355 (0:257)	scaffold_1:41797346-41797712(+) (10)	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216092.1.S1_s_at	C	C1S	POPTR_0001s41850	POPTR_0001s41850 (0:657)	scaffold_1:41579471-41579622(+) (11)	NA	NA	NA	AT5G54240.1	Protein of unknown function (DUF1223) 	LOC_Os07g37310.1	"uncharacterized secreted protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216383.1.S1_at	C	C1S	POPTR_0013s13160	POPTR_0013s13160 (0:772)	scaffold_13:13725073-13725377(-) (10)	NA	NA	NA	AT5G16250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g67110.1	expressed protein	Medtr7g090170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216512.1.S1_at	C	C1S	POPTR_0344s00200	POPTR_0344s00200 (0:1042)	scaffold_344:10329-10433(-) (9)	NA	C0LGD7	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	AT1G06840.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g72990.2	expressed protein	Medtr3g083770.1	Protein kinase; Adipokinetic hormone 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.216645.1.S1_at	C	C1S	POPTR_0001s23820	POPTR_0001s23820 (0:864)	scaffold_1:23205278-23205772(-) (11)	NA	NA	NA	AT2G44310.1	Calcium-binding EF-hand family protein 	LOC_Os03g29770.1	"EF hand family protein, expressed"	Medtr7g026040.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.216906.1.S1_at	C	C3S	POPTR_0017s13500	POPTR_0017s13510 (0:2630)//POPTR_0017s13520 (0:1487)//POPTR_0017s13500 (0:861)	NA	NA	Q9SIR9	Serpin-Z10	AT2G25240.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41419.1	"serpin domain containing protein, putative, expressed"	Medtr7g047230.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217204.1.S1_at	C	C1S	POPTR_0004s22710	POPTR_0004s22710 (0:653)	scaffold_4:21555500-21555673(-) (11)	NA	Q9SJJ5	Cyclin-dependent kinases regulatory subunit 2	AT2G27970.1	CDK-subunit 2 	LOC_Os03g05300.1	"cyclin-dependent kinases regulatory subunit 1, putative, expressed"	Medtr4g075990.1	"Cyclin-dependent kinase, regulatory subunit "	GO:0007049|cell cycle	GO:0016538|cyclin-dependent protein kinase regulator activity	NA
PtpAffx.217276.1.S1_at	C	C1S	POPTR_0018s14410	POPTR_0018s14410 (0:289)	scaffold_18:14618774-14619070(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.217276.1.S1_s_at	C	C1S	POPTR_0018s14410	POPTR_0018s14410 (0:289)	scaffold_18:14618599-14619024(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218198.1.S1_s_at	C	C1S	POPTR_0008s16040	POPTR_0008s16040 (0:19)	scaffold_8:10704426-10704626(+) (11)	NA	O23006	LysM domain-containing GPI-anchored protein 2	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g045500.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.218200.1.S1_at	C	C1S	POPTR_0015s00355	POPTR_0015s00355 (0:596)	scaffold_10:6514920-6515120(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218292.1.S1_s_at	C	C1S	POPTR_0015s06000	POPTR_0015s06000 (0:1116)	scaffold_15:6300497-6301034(-) (10)	NA	P36910	Acidic endochitinase SE2	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr1g125760.1	"Glycoside hydrolase, chitinase active site "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.218372.1.S1_at	C	C1S	POPTR_0012s11980	POPTR_0012s11980 (0:621)	scaffold_12:12329882-12330318(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.218715.1.S1_at	C	C1S	POPTR_0043s00280	POPTR_0043s00280 (0:116)	scaffold_43:121081-122194(-) (9)	NA	Q95747	"60S ribosomal protein L16, mitochondrial"	ATMG00080.1	ribosomal protein L16 	LOC_Os12g34128.1	"mitochondrial 60S ribosomal protein L16, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2188.1.A1_a_at	C	C1S	POPTR_0006s24780	POPTR_0006s24780 (0:498)	scaffold_6:23331171-23331204(+) (9)	NA	NA	NA	AT2G25970.1	KH domain-containing protein 	LOC_Os02g13130.1	"KH domain-containing protein, putative, expressed"	Medtr1g020830.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.218977.1.S1_at	C	C1S	POPTR_0014s01185	POPTR_0014s01185 (0:105)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.218977.1.S1_x_at	C	C1S	POPTR_0014s01185	POPTR_0014s01185 (0:105)	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.218994.1.S1_at	C	C4S	POPTR_0012s12260	POPTR_0012s12260 (0:3548)//POPTR_0012s12280 (0:3259)//POPTR_0012s12270 (0:2837)//POPTR_0012s12290 (0:2211)	scaffold_12:12502172-12502327(+) (11)	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g041090.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.219002.1.S1_at	C	C1S	POPTR_0012s11980	POPTR_0012s11980 (0:621)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219333.1.S1_at	C	C1S	POPTR_1387s00200	POPTR_1387s00200 (0:1096)	scaffold_1387:305-901(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219622.1.S1_at	C	C1S	POPTR_0656s00195	POPTR_0656s00195 (0:577)	scaffold_19:970089-970580(+) (10)//scaffold_656:8252-8743(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.21967.1.A1_at	C	C1S	POPTR_0004s22870	POPTR_0004s22870 (0:438)	scaffold_4:21712341-21712632(+) (11)	NA	NA	NA	AT1G03330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g05850.1	"LSM domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219712.1.S1_at	C	C1S	POPTR_0006s14010	POPTR_0006s14010 (0:765)	scaffold_6:11271374-11271873(+) (10)	NA	P17407	21 kDa protein	AT5G20740.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr8g132880.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.219734.1.S1_at	C	C1A	POPTR_0006s13590	POPTR_0006s13590 (0:11)	scaffold_6:10805015-10805466(-) (10)	NA	Q14FG5	DNA-directed RNA polymerase subunit beta	ATCG00190.1	RNA polymerase subunit beta 	LOC_Os04g16820.1	"DNA-directed RNA polymerase subunit beta, putative, expressed"	Medtr1g071250.1	"Photosystem antenna protein-like; RNA polymerase Rpb2, domain 6; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.219762.1.S1_at	C	C1S	POPTR_0006s12900	POPTR_0006s12900 (0:7900)	scaffold_6:10061581-10062105(-) (10)	NA	Q9S814	Ethylene-insensitive protein 2	AT5G03280.1	NRAMP metal ion transporter family protein 	LOC_Os07g06130.3	"ethylene-insensitive protein, putative, expressed"	Medtr7g121800.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.220087.1.S1_at	C	C1S	POPTR_0001s03710	POPTR_0001s03710 (0:2823)	scaffold_3119:516-735(+) (10)	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os07g40810.1	"NBS-LRR type disease resistance protein, putative"	Medtr5g028060.1	NB-ARC 	GO:0006915|apoptosis	GO:0005524|ATP binding	NA
PtpAffx.220366.1.S1_at	C	C1S	POPTR_0531s00200	POPTR_0531s00200 (0:633)	scaffold_1:29022474-29022508(+) (11)//scaffold_3:2105417-2105451(+) (11)//scaffold_3:2113845-2113879(+) (11)//scaffold_531:347-381(+) (11)//scaffold_531:9405-9439(+) (11)//scaffold_818:8481-8515(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220762.1.S1_at	C	C3S	POPTR_0017s13500	POPTR_0017s13510 (0:2630)//POPTR_0017s13520 (0:1487)//POPTR_0017s13500 (0:861)	scaffold_17:13634917-13635274(+) (9)	NA	Q9SIR9	Serpin-Z10	AT2G25240.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41419.1	"serpin domain containing protein, putative, expressed"	Medtr7g047230.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220909.1.S1_at	C	C3S	POPTR_0006s02900	POPTR_0006s02920 (0:708)//POPTR_0006s02900 (0:290)//POPTR_0302s00200 (0:290)	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g105340.1	"Plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.220964.1.S1_x_at	C	C1S	POPTR_0183s00220	POPTR_0183s00220 (0:195)	scaffold_183:20349-22317(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221170.1.S1_at	C	C1S	POPTR_0014s03110	POPTR_0014s03110 (0:166)	scaffold_14:2517627-2517926(-) (10)	NA	Q9FX08	Probable protein phosphatase 2C 12	AT1G47380.1	Protein phosphatase 2C family protein 	LOC_Os02g35910.1	"protein phosphotase protein, putative, expressed"	Medtr3g147960.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221201.1.S1_at	C	C4S	POPTR_0014s02320	POPTR_0014s02360 (0:640)//POPTR_0014s02330 (0:541)//POPTR_0014s02350 (0:519)//POPTR_0014s02320 (0:495)	NA	NA	NA	NA	AT3G46630.1	Protein of unknown function (DUF3223) 	LOC_Os08g21700.1	"DCL, chloroplast precursor, putative, expressed"	Medtr3g147240.1	"Protein DCL, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.221676.1.S1_at	C	C1S	POPTR_0003s04560	POPTR_0003s04560 (0:1155)	scaffold_3:5273895-5274398(-) (11)	NA	NA	NA	AT1G17620.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os01g39290.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g121250.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.221758.1.S1_s_at	C	C1S	POPTR_0006s27340	POPTR_0006s27340 (0:3)	scaffold_6:25275251-25275408(+) (11)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G62930.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222323.1.S1_at	C	C1A	POPTR_0017s04780	POPTR_0017s04780 (0:83)	scaffold_17:3676277-3677539(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222340.1.S1_at	C	C2S	POPTR_0017s00600	POPTR_0017s04360 (0:2544)//POPTR_0017s00600 (0:2441)	scaffold_17:3372692-3372966(-) (11)	NA	P83304	Mannose/glucose-specific lectin (Fragment)	AT3G16460.2	Mannose-binding lectin superfamily protein 	LOC_Os11g32210.1	jacalin-like lectin domain containing protein	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222420.1.S1_at	C	C1S	POPTR_0004s19920	POPTR_0004s19920 (0:3353)	scaffold_4:19579833-19579872(-) (11)	NA	B2VH13	Probable phosphoglycerate mutase gpmB	AT5G22620.2	phosphoglycerate/bisphosphoglycerate mutase family protein 	LOC_Os11g05260.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g073280.1	Phosphoglycerate/bisphosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222855.1.S1_at	C	C1S	POPTR_0005s24200	POPTR_0005s24200 (0:1941)	scaffold_5:22819983-22820201(+) (9)	NA	O81117	Cytochrome P450 94A1	AT5G63450.1	"cytochrome P450, family 94, subfamily B, polypeptide 1 "	LOC_Os03g12260.1	"cytochrome P450 protein, putative, expressed"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.222879.1.S1_at	C	C1S	POPTR_0001s29530	POPTR_0001s29530 (0:780)	scaffold_1:28186383-28186911(+) (11)	NA	P11670	Basic form of pathogenesis-related protein 1	AT2G14580.1	basic pathogenesis-related protein 1 	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr4g122190.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.222913.1.S1_at	C	C1S	POPTR_1172s00210	POPTR_1172s00210 (0:553)	scaffold_1172:2735-2771(+) (11)	NA	Q5NE24	Nodulation-signaling pathway 2 protein	AT4G08250.1	GRAS family transcription factor 	LOC_Os03g15680.1	"nodulation-signaling pathway 2 protein, putative"	Medtr4g142290.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223295.1.S1_s_at	C	C1A	POPTR_0004s24000	POPTR_0004s24000 (0:132)	scaffold_4:22634980-22635276(+) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.2	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.223759.1.S1_s_at	C	C1S	POPTR_0001s29500	POPTR_0001s29500 (0:139)	scaffold_1:28162253-28162392(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223818.1.S1_at	C	C1A	POPTR_0027s00340	POPTR_0027s00340 (2:571)	scaffold_3:2182875-2183668(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.223918.1.S1_x_at	C	C3S	POPTR_0008s21630	POPTR_0016s11393 (0:1286)//POPTR_0008s21630 (0:1284)//POPTR_0009s00560 (0:1281)	NA	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.224145.1.S1_at	C	C1S	POPTR_0007s07390	POPTR_0007s07390 (0:953)	scaffold_1:11401771-11402158(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.224459.1.S1_s_at	C	C3S	POPTR_0007s08900	POPTR_0007s08900 (0:2008)//POPTR_0016s11393 (0:1598)//POPTR_0012s06240 (0:317)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.224580.1.S1_at	C	C1S	POPTR_0007s13920	POPTR_0007s13920 (0:1354)	scaffold_7:13920169-13920459(-) (9)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.224639.1.S1_at	C	C2S	POPTR_0010s08720	POPTR_0010s08730 (0:923)//POPTR_0010s08720 (0:536)	scaffold_10:9601155-9601457(+) (11)	NA	NA	NA	AT5G43630.1	zinc knuckle (CCHC-type) family protein 	NA	NA	Medtr5g007190.1	"Zinc finger, CCHC-type; Plus-3 "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.224848.1.S1_s_at	C	C1A	POPTR_0001s43920	POPTR_0001s43920 (0:145)	scaffold_1:44318109-44318148(+) (11)	NA	O81833	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	AT4G27300.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.224897.1.S1_at	C	C1S	POPTR_0014s18380	POPTR_0014s18380 (0:1544)	scaffold_14:15485042-15485088(+) (11)	NA	Q9LN49	3-ketoacyl-CoA synthase 4	AT1G19440.1	3-ketoacyl-CoA synthase 4 	LOC_Os05g49290.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr4g095830.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.225118.1.S1_at	C	C1S	POPTR_0003s18820	POPTR_0003s18820 (0:1464)	scaffold_3:17742204-17742693(-) (11)	NA	P52835	Flavonol 3-sulfotransferase	AT5G07010.1	sulfotransferase 2A 	LOC_Os04g44460.1	"sulfotransferase domain containing protein, expressed"	Medtr8g077540.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.225162.1.S1_at	C	C1S	POPTR_0019s12780	POPTR_0019s12780 (0:4133)	scaffold_19:13737957-13738201(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os05g23990.1	"rp3 protein, putative, expressed"	Medtr8g021210.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225162.1.S1_x_at	C	C1S	POPTR_0019s12780	POPTR_0019s12780 (0:4133)	scaffold_19:13737944-13738225(+) (11)	NA	Q40392	TMV resistance protein N	AT5G17680.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os05g23990.1	"rp3 protein, putative, expressed"	Medtr8g021210.1	TIR; Disease resistance protein 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.225265.1.S1_at	C	C1S	POPTR_0007s02250	POPTR_0007s02250 (0:989)	scaffold_7:1340877-1340921(-) (11)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G70250.1	"receptor serine/threonine kinase, putative "	LOC_Os01g02400.1	"protein kinase domain containing protein, expressed"	Medtr1g034890.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.225325.1.S1_at	C	C1S	POPTR_0004s00210	POPTR_0004s00210 (0:1831)	scaffold_4:15283-15359(-) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT5G16370.1	acyl activating enzyme 5 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084090.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.225331.1.S1_s_at	C	C3S	POPTR_0008s21630	POPTR_0016s11393 (0:1598)//POPTR_0008s21630 (0:1596)//POPTR_0015s02634 (0:894)	NA	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.225347.1.S1_at	C	C1S	POPTR_0007s08900	POPTR_0007s08900 (0:950)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.225376.1.S1_at	C	C1S	POPTR_0015s05890	POPTR_0015s05890 (0:3285)	scaffold_15:6213490-6213562(-) (10)//scaffold_15:6250470-6250542(-) (10)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os11g35840.1	conserved hypothetical protein	Medtr5g093230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.225448.1.S1_at	C	C1S	POPTR_0019s02060	POPTR_0019s02060 (0:2271)	NA	NA	O82484	Putative disease resistance protein At4g10780	AT4G10780.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g10900.1	"disease resistance protein, putative, expressed"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.22564.1.S1_at	C	C1S	POPTR_0014s00300	POPTR_0014s00300 (0:102)	NA	NA	NA	NA	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os04g51970.2	"synaptic vesicle 2-related protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22577.1.S1_at	C	C1S	POPTR_0010s18410	POPTR_0010s18410 (0:738)	scaffold_10:16658694-16659066(+) (11)	NA	Q6PEI7	CTP synthase 1	AT3G12670.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr2g080630.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.225770.1.S1_at	C	C3S	POPTR_0005s05720	POPTR_0005s05730 (0:669)//POPTR_0005s05740 (0:294)//POPTR_0005s05720 (0:249)	NA	NA	Q08112	40S ribosomal protein S15-1	AT1G04270.2	cytosolic ribosomal protein S15 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.225901.1.S1_at	C	C2S	POPTR_0023s00640	POPTR_0023s00640 (0:251)//POPTR_0057s00200 (0:83)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.22767.1.S1_a_at	C	C5S	POPTR_0001s23100	POPTR_0001s23120 (0:495)//POPTR_0001s23130 (0:495)//POPTR_0002s21830 (0:493)//POPTR_0001s23110 (0:478)//POPTR_0001s23100 (0:478)	scaffold_1:22146590-22146677(+) (11)//scaffold_1:22286501-22286588(-) (11)//scaffold_1:22327934-22328021(-) (11)//scaffold_1:22370689-22370776(-) (11)//scaffold_2:18529901-18529988(+) (11)	NA	Q7XKV4	Beta-glucosidase 12	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39864.4	"Os4bglu11 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.22767.2.A1_at	C	C6S	POPTR_0001s23060	POPTR_0001s23120 (0:618)//POPTR_0001s23130 (0:618)//POPTR_0001s23110 (0:601)//POPTR_0613s00200 (0:601)//POPTR_0001s23100 (0:601)//POPTR_0001s23060 (0:577)	scaffold_1:22286442-22286818(-) (9)//scaffold_1:22296471-22296853(-) (9)//scaffold_1:22327875-22328251(-) (9)//scaffold_1:22370630-22371006(-) (9)//scaffold_613:9711-10093(-) (9)	NA	Q5Z9Z0	Beta-glucosidase 24	AT3G60120.1	beta glucosidase 27 	LOC_Os04g39864.4	"Os4bglu11 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed"	Medtr3g040460.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.22863.1.S1_at	C	C1S	POPTR_0012s07920	POPTR_0012s07920 (0:1090)	scaffold_12:8909379-8909677(-) (9)	NA	Q6Z808	Rac-like GTP-binding protein 3	AT5G62880.1	RAC-like 10 	LOC_Os02g50860.1	"ras-related protein, putative, expressed"	Medtr8g089410.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.2333.2.A1_at	C	C1S	POPTR_0010s04610	POPTR_0010s04610 (0:4478)	scaffold_10:5734095-5734623(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr4g160230.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.23933.1.A1_at	C	C1A	POPTR_0009s15740	POPTR_0009s15740 (0:89)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24179.2.S1_at	C	C1S	POPTR_0004s15630	POPTR_0004s15630 (0:260)	NA	NA	Q9XIA7	Mitochondrial import receptor subunit TOM6 homolog	AT1G49410.1	translocase of the outer mitochondrial membrane 6 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2421.2.S1_at	C	C1S	POPTR_0005s08380	POPTR_0005s08380 (0:266)	scaffold_5:5787850-5788292(-) (10)	NA	Q940M2	"Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial"	AT4G39660.1	alanine:glyoxylate aminotransferase 2 	LOC_Os03g07570.4	"aminotransferase, putative, expressed"	Medtr4g140630.1	"Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.24508.3.S1_a_at	C	C2S	POPTR_0018s06610	POPTR_0018s06620 (0:4317)//POPTR_0018s06610 (0:287)	scaffold_18:6644562-6644751(-) (11)	NA	Q94A82	"Nudix hydrolase 19, chloroplastic"	AT5G20070.1	nudix hydrolase homolog 19 	LOC_Os06g04910.1	"hydrolase, NUDIX family protein, expressed"	Medtr8g119760.1	"Isopentenyl-diphosphate delta-isomerase, type 1; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.24520.1.A1_a_at	C	C2S	POPTR_0017s03230	POPTR_0017s03240 (0:248)//POPTR_0017s03230 (0:248)	scaffold_1:39270208-39270717(+) (11)//scaffold_1:39270475-39271298(+) (11)//scaffold_1:39270656-39271737(+) (11)//scaffold_17:2265871-2276013(+) (11)//scaffold_17:2266327-2276638(+) (11)//scaffold_17:2266519-2277059(+) (11)//scaffold_17:2266897-2277503(+) (11)//scaffold_17:2275771-2277507(+) (10)//scaffold_17:2294492-2295478(+) (11)//scaffold_17:2294949-2296031(+) (11)//scaffold_17:2295397-2303442(+) (11)//scaffold_17:2295589-2303995(+) (11)//scaffold_17:2295970-2315415(+) (11)//scaffold_17:2302925-2327378(+) (11)//scaffold_17:2303381-2315408(+) (9)//scaffold_17:2303553-2325966(+) (9)//scaffold_17:2339343-2341224(+) (11)//scaffold_17:2339800-2341773(+) (11)//scaffold_17:2339992-2352859(+) (11)//scaffold_17:2340258-2353412(+) (11)//scaffold_17:2340715-2355009(+) (11)//scaffold_17:2341163-2365060(+) (11)//scaffold_17:2341335-2355430(+) (10)//scaffold_17:2341712-2365064(+) (10)//scaffold_17:2351899-2366049(+) (10)//scaffold_8:16153085-16154091(-) (11)//scaffold_8:16153985-16154642(-) (11)//scaffold_8:16154500-16165388(-) (11)//scaffold_8:16154948-16165809(-) (11)//scaffold_8:16155395-16166393(-) (11)//scaffold_8:16164270-16166547(-) (11)//scaffold_8:16207813-16208913(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.195.S1_s_at	C	C1S	POPTR_0006s22640	POPTR_0006s22640 (0:2931)	scaffold_6:21585430-21585525(-) (11)	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
PtpAffx.249.2.S1_at	C	C1S	POPTR_0003s11070	POPTR_0003s11070 (0:402)	scaffold_3:11925228-11925343(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT4G12510.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46810.1	"LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106200.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.236.A1_at	C	C2A	POPTR_0067s00290	POPTR_0067s00290 (0:208)//POPTR_0067s00300 (0:208)	scaffold_67:80976-81138(+) (11)//scaffold_67:90051-90213(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.514.S1_at	C	C1S	POPTR_0001s12300	POPTR_0001s12300 (0:567)	NA	NA	NA	NA	AT4G20150.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g31490.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.549.S1_at	C	C1A	POPTR_1161s00200	POPTR_1161s00200 (0:304)	scaffold_1161:2319-2406(+) (11)//scaffold_12:8897237-8897324(-) (11)//scaffold_19:1143082-1143169(+) (10)//scaffold_19:1151888-1151975(+) (10)//scaffold_935:876-963(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.249.579.S1_at	C	C1S	POPTR_0008s04560	POPTR_0008s04560 (0:835)	NA	NA	O80362	"50S ribosomal protein L10, chloroplastic"	AT5G13510.1	Ribosomal protein L10 family protein 	LOC_Os03g17580.1	"ribosomal protein L10, putative, expressed"	Medtr8g146080.1	Ribosomal protein L10 	GO:0042254|ribosome biogenesis	NA	GO:0005622|intracellular
PtpAffx.24919.1.A1_at	C	C1S	POPTR_0007s14010	POPTR_0007s14010 (0:232)	NA	NA	Q94G00	Peptidyl-prolyl cis-trans isomerase Pin1	AT2G18040.1	"peptidylprolyl cis/trans isomerase, NIMA-interacting 1 "	LOC_Os04g56800.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g090170.1	PpiC-type peptidyl-prolyl cis-trans isomerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.250003.1.S1_s_at	C	C4S	POPTR_0008s21830	POPTR_0017s03180 (0:972)//POPTR_0008s21830 (0:356)//POPTR_0014s19650 (0:290)//POPTR_0017s03170 (0:113)	scaffold_1:39269402-39269781(+) (11)//scaffold_14:17485859-17486238(+) (9)//scaffold_14:17516156-17516535(+) (11)//scaffold_14:17548187-17548566(+) (11)//scaffold_17:2264904-2274843(+) (10)//scaffold_17:2274714-2275092(+) (9)//scaffold_17:2293449-2302121(+) (11)//scaffold_17:2301857-2302235(+) (10)//scaffold_17:2313290-2313669(+) (11)//scaffold_17:2324396-2324775(+) (11)//scaffold_17:2338307-2338685(+) (10)//scaffold_17:2350841-2351219(+) (10)//scaffold_8:16156228-16156605(-) (9)//scaffold_8:16167257-16167635(-) (11)//scaffold_8:16197665-16198044(-) (11)//scaffold_8:16209617-16209996(-) (11)//scaffold_9:246308-246687(-) (11)//scaffold_9:338188-338546(-) (9)//scaffold_9:378047-378426(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25153.1.A1_at	C	C1S	POPTR_0012s11930	POPTR_0012s11930 (0:6)	NA	NA	NA	NA	AT3G05320.1	O-fucosyltransferase family protein 	LOC_Os02g07200.3	"protein-O-fucosyltransferase 1, putative, expressed"	Medtr4g114850.1	"protein-O-fucosyltransferase 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.25435.2.A1_at	C	C1S	POPTR_0013s14220	POPTR_0013s14220 (0:252)	scaffold_13:14510905-14511171(-) (11)	NA	NA	NA	AT2G20820.1	unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g38520.1	expressed protein	AC229695_7.1	hypothetical protein AC229695.5 30108-33175 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.26462.1.S1_at	C	C1S	POPTR_0003s09380	POPTR_0003s09380 (0:410)	NA	NA	NA	NA	AT1G32310.1	unknown protein; Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g029560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.2710.1.S1_a_at	C	C1S	POPTR_0011s15560	POPTR_0011s15560 (0:2034)	scaffold_11:17645417-17645478(+) (11)	NA	Q8L868	"Glucan endo-1,3-beta-glucosidase 11"	AT1G32860.1	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.27419.2.A1_at	C	C1S	POPTR_0010s14860	POPTR_0010s14860 (0:1037)	NA	NA	Q6CBH3	"Probable hexaprenyl pyrophosphate synthase, mitochondrial"	AT2G34630.2	geranyl diphosphate synthase 1 	LOC_Os06g46450.1	"polyprenyl synthetase, putative, expressed"	Medtr5g019360.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.27667.1.S1_at	C	C1S	POPTR_0002s11610	POPTR_0002s11610 (0:181)	scaffold_2:8660958-8661452(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.278.2.S1_at	C	C1S	POPTR_0001s21800	POPTR_0001s21800 (0:3121)	scaffold_1:20301192-20301468(-) (11)	NA	NA	NA	AT5G24690.1	Protein of unknown function (DUF3411) 	LOC_Os12g18630.1	expressed protein	Medtr2g095320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.29457.2.A1_a_at	C	C1S	POPTR_0006s04980	POPTR_0006s04980 (0:726)	scaffold_6:3477287-3477459(+) (11)	NA	O65628	Cytoplasmic tRNA 2-thiolation protein 2	AT4G35910.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os12g39840.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.30195.1.S1_a_at	C	C4S	POPTR_0019s13910	POPTR_0019s13930 (0:893)//POPTR_0019s13920 (0:843)//POPTR_0019s13910 (0:407)//POPTR_0019s13940 (0:318)	NA	NA	NA	NA	AT4G10270.1	Wound-responsive family protein 	LOC_Os04g54280.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr2g095470.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31370.1.A1_at	C	C1S	POPTR_0003s16960	POPTR_0003s16960 (0:196)	scaffold_3:16458897-16459264(+) (11)	NA	NA	NA	AT1G27330.1	Ribosome associated membrane protein RAMP4 	LOC_Os11g41875.2	"membrane protein, putative, expressed"	Medtr2g030550.1	Ribosome associated membrane RAMP4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.31896.1.S1_at	C	C1S	POPTR_0008s15200	POPTR_0008s15200 (0:145)	scaffold_8:10170390-10170705(+) (10)	NA	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.32219.1.S1_at	C	C1S	POPTR_0006s12410	POPTR_0006s12410 (0:1138)	scaffold_6:9565068-9565322(-) (11)	NA	NA	NA	AT2G36835.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g56890.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3378.1.S1_at	C	C1S	POPTR_0004s03960	POPTR_0004s03960 (0:817)	NA	NA	O94667	RNA polymerase-associated protein C651.09c	AT1G61040.1	plus-3 domain-containing protein 	LOC_Os12g35030.1	"plus-3 domain containing protein, expressed"	Medtr7g117510.1	Plus-3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.3397.1.A1_at	C	C1S	POPTR_0007s15350	POPTR_0007s15350 (0:33)	NA	NA	P31244	DNA repair protein RAD16	AT1G50410.1	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related 	LOC_Os08g08220.2	"EDA16, putative, expressed"	Medtr2g014500.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.3460.3.S1_at	C	C1S	POPTR_0002s25230	POPTR_0002s25230 (0:1196)	scaffold_2:22376596-22376843(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3476.1.A1_at	C	C1S	POPTR_0006s04930	POPTR_0006s04930 (0:494)	scaffold_6:3440043-3440304(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35424.1.S1_at	C	C1S	POPTR_0003s17890	POPTR_0003s17890 (0:666)	scaffold_3:17135653-17136423(+) (9)	NA	NA	NA	AT1G80700.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80980.1); Has 476 Blast hits to 340 proteins in 85 species: Archae - 2; Bacteria - 44; Metazoa - 84; Fungi - 36; Plants - 40; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink). 	LOC_Os08g17610.1	expressed protein	Medtr8g070810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35486.1.S1_at	C	C1S	POPTR_0008s17060	POPTR_0008s17060 (0:849)	NA	NA	NA	NA	AT2G33390.1	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g065400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.35493.1.S1_at	C	C1S	POPTR_0001s16130	POPTR_0001s16130 (0:191)	scaffold_1:12951596-12952141(-) (9)	NA	NA	NA	AT1G53708.1	ROTUNDIFOLIA like 9 	NA	NA	Medtr8g027090.1	DVL 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.3590.1.S1_at	C	C1S	POPTR_0008s03900	POPTR_0008s03900 (0:514)	scaffold_8:2144913-2145064(-) (10)	NA	Q9FGZ9	Ubiquitin-like protein 5	AT5G42300.1	ubiquitin-like protein 5 	LOC_Os02g41820.1	expressed protein	Medtr3g105020.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36157.1.A1_at	C	C1S	POPTR_0006s05600	POPTR_0006s05600 (0:324)	scaffold_6:3942609-3942879(-) (11)	NA	Q3EAI1	Transcription factor bHLH60	AT3G57800.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g32510.4	"BHLH transcription factor, putative, expressed"	Medtr1g071420.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.36677.1.S1_at	C	C2S	POPTR_0002s18940	POPTR_0002s18950 (0:3795)//POPTR_0002s18940 (0:1002)	scaffold_2:14830740-14830894(+) (11)	NA	NA	NA	AT3G62190.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g44310.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g133860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.36713.1.A1_at	C	C1S	POPTR_0012s07440	POPTR_0012s07440 (0:151)	scaffold_12:8365815-8366208(-) (11)	NA	Q9LV16	"Probable beta-1,3-galactosyltransferase 19"	AT5G62620.1	Galactosyltransferase family protein 	LOC_Os03g58920.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g038320.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.3672.1.S1_at	C	C3S	POPTR_0006s27600	POPTR_0006s27620 (0:1198)//POPTR_0006s27600 (0:834)//POPTR_0006s27610 (0:330)	scaffold_6:25451796-25452237(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g137930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.36901.1.A1_at	C	C1A	POPTR_0086s00200	POPTR_0086s00200 (0:2622)	NA	NA	C0LGG3	Probable LRR receptor-like serine/threonine-protein kinase At1g51820	AT4G29990.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44930.1	"receptor-like protein kinase, putative, expressed"	Medtr8g016500.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.37081.2.S1_s_at	C	C1S	POPTR_0004s03790	POPTR_0004s03790 (0:107)	scaffold_4:2659936-2660235(+) (11)	NA	Q9FNI6	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2	AT1G61140.3	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related 	LOC_Os01g57110.2	"SNF2 family N-terminal domain containing protein, expressed"	Medtr2g014500.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.37388.1.A1_at	C	C1S	POPTR_0014s12250	POPTR_0014s12250 (0:435)	scaffold_14:9045607-9045639(-) (9)	NA	P32292	Indole-3-acetic acid-induced protein ARG2	AT4G02380.1	senescence-associated gene 21 	NA	NA	NA	NA	GO:0006950|response to stress	NA	NA
PtpAffx.37587.2.S1_at	C	C1S	POPTR_0007s05430	POPTR_0007s05430 (0:2736)	scaffold_7:3534292-3534695(+) (11)	NA	NA	NA	AT4G39900.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr3g101780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38305.1.S1_at	C	C1S	POPTR_0018s06230	POPTR_0018s06230 (0:179)	scaffold_18:5952135-5952401(+) (11)	NA	NA	NA	AT4G13395.1	ROTUNDIFOLIA like 12 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.38675.2.S1_at	C	C1S	POPTR_0001s38240	POPTR_0001s38240 (0:1092)	NA	NA	Q8LHP0	Transcription elongation factor 1 homolog	AT5G46030.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g43730.1	"transcription elongation factor 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.41350.1.A1_at	C	C1S	POPTR_0001s04270	POPTR_0001s04270 (0:418)	NA	NA	NA	NA	AT4G08810.1	calcium ion binding 	LOC_Os07g43990.1	expressed protein	Medtr4g134130.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.419.1.A1_at	C	C1S	POPTR_0007s10350	POPTR_0007s10350 (0:905)	NA	NA	O82333	Probable indole-3-acetic acid-amido synthetase GH3.1	AT2G14960.1	Auxin-responsive GH3 family protein 	LOC_Os07g40290.1	"OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.42009.1.S1_at	C	C1S	POPTR_0005s09550	POPTR_0005s09550 (0:2300)	NA	NA	NA	NA	AT5G23150.1	Tudor/PWWP/MBT domain-containing protein 	LOC_Os08g01054.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g101080.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43228.1.A1_at	C	C1S	POPTR_0008s22690	POPTR_0008s22690 (0:1046)	scaffold_8:17375550-17377356(+) (10)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os05g33440.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43305.1.A1_at	C	C1S	POPTR_0011s13630	POPTR_0011s13630 (0:747)	NA	NA	NA	NA	AT1G51100.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g48500.1	expressed protein	Medtr2g096980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43305.1.A1_s_at	C	C1S	POPTR_0011s13630	POPTR_0011s13630 (0:747)	NA	NA	NA	NA	AT1G51100.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g48500.1	expressed protein	Medtr2g096980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43599.2.A1_at	C	C1S	POPTR_0018s09820	POPTR_0018s09820 (0:693)	scaffold_18:10888739-10889269(+) (11)	NA	NA	NA	AT2G18910.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g26370.2	"wiskott-Aldrich syndrome protein family member 2, putative, expressed"	Medtr8g129280.1	"hydroxyproline-rich glycoprotein family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43706.1.S1_s_at	C	C1S	POPTR_0007s09270	POPTR_0007s09270 (0:302)	scaffold_7:8639395-8639654(-) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G66060.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr5g022950.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.43780.1.S1_at	C	C1A	POPTR_0014s16720	POPTR_0014s16720 (0:168)	scaffold_14:12786771-12787381(-) (10)	NA	Q43088	"Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT3G07670.1	Rubisco methyltransferase family protein 	LOC_Os02g49326.1	"SET domain-containing protein, putative, expressed"	Medtr3g106630.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.43883.1.A1_a_at	C	C1S	POPTR_0018s11260	POPTR_0018s11260 (0:2071)	scaffold_18:12056657-12056705(-) (11)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr8g144940.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.44237.1.A1_at	C	C1S	POPTR_0017s06480	POPTR_0017s06480 (0:14)	NA	NA	O48650	Protein translation factor SUI1 homolog	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os05g41900.2	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.44527.1.A1_at	C	C3S	POPTR_0019s00540	POPTR_0019s00550 (0:3612)//POPTR_0019s00560 (0:1892)//POPTR_0019s00540 (0:335)	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.44539.1.A1_at	C	C1S	POPTR_0018s09490	POPTR_0018s09490 (0:384)	scaffold_18:10376513-10376590(+) (10)	NA	Q9SP35	Mitochondrial import inner membrane translocase subunit Tim17	AT2G37410.2	translocase inner membrane subunit 17-2 	LOC_Os07g41330.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.4473.7.A1_at	C	C1S	POPTR_0002s26270	POPTR_0002s26270 (0:99)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.454.7.A2_at	C	C1S	POPTR_0016s02540	POPTR_0016s02540 (0:1855)	scaffold_16:1253079-1253549(+) (11)	NA	P27164	Calmodulin-related protein	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45441.1.A1_at	C	C1S	POPTR_0003s01640	POPTR_0003s01640 (0:580)	scaffold_3:1515550-1516113(+) (10)	NA	NA	NA	AT2G01080.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os03g15630.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr2g007950.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.4568.6.A1_at	C	C1S	POPTR_0018s10170	POPTR_0018s10170 (0:3366)	scaffold_18:11147272-11147431(-) (10)	NA	Q28CH8	Protein YIPF6	AT2G18840.1	Integral membrane Yip1 family protein 	LOC_Os01g64760.1	"Yip1 domain containing protein, expressed"	Medtr8g128780.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45699.1.S1_at	C	C1S	POPTR_0002s22750	POPTR_0002s22750 (0:346)	NA	NA	NA	NA	AT4G03100.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g34840.1	"rhoGAP domain containing protein, expressed"	AC235488_25.1	PAK-box/P21-Rho-binding; RhoGAP AC235488.1 117094-119868 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.45958.1.A1_at	C	C1S	POPTR_0001s11910	POPTR_0001s11910 (0:414)	scaffold_1:9245335-9246002(-) (10)	NA	O21243	Cytochrome c oxidase assembly protein ctaG	AT1G02410.1	cytochrome c oxidase assembly protein CtaG / Cox11 family 	LOC_Os03g50940.2	"cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed"	Medtr3g086970.1	Cytochrome c oxidase assembly protein CtaG/Cox11 	NA	GO:0005507|copper ion binding	NA
PtpAffx.46464.1.S1_at	C	C1S	POPTR_0001s45850	POPTR_0001s45850 (0:320)	NA	NA	Q9C884	Probable methyltransferase PMT18	AT1G33170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g01450.1	"methyltransferase, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.4711.1.S1_a_at	C	C1S	POPTR_0001s24350	POPTR_0001s24350 (0:864)	scaffold_1:23658753-23659004(+) (11)	NA	Q9JJW6	RNA and export factor-binding protein 2	AT5G59950.5	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g17010.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g078540.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.47156.1.S1_at	C	C1S	POPTR_0013s07690	POPTR_0013s07690 (0:150)	NA	NA	NA	NA	NA	NA	LOC_Os04g50208.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47749.1.S1_at	C	C1S	POPTR_0162s00280	POPTR_0162s00280 (0:215)	scaffold_162:41788-41821(-) (10)//scaffold_8:784174-784207(+) (10)	NA	NA	NA	AT3G10650.1	BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). 	NA	NA	Medtr1g059650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.47904.1.S1_at	C	C1S	POPTR_0016s01110	POPTR_0016s01110 (0:427)	NA	NA	Q9LDL7	Scarecrow-like transcription factor PAT1	AT4G17230.1	SCARECROW-like 13 	LOC_Os10g22430.1	"gibberellin response modulator protein, putative, expressed"	Medtr8g148340.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48153.1.S1_at	C	C1S	POPTR_0013s15635	POPTR_0013s15635 (0:284)	scaffold_13:15565017-15565498(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.48606.1.A1_at	C	C1S	POPTR_0010s07950	POPTR_0010s07950 (0:102)	NA	NA	NA	NA	AT3G23440.1	embryo sac development arrest 6 	LOC_Os04g43310.1	expressed protein	Medtr1g090140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.49597.1.A1_s_at	C	C1S	POPTR_0005s10340	POPTR_0005s10340 (0:116)	scaffold_5:7414855-7415410(+) (10)	NA	P25819	Catalase-2	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
PtpAffx.50114.1.A1_at	C	C1S	POPTR_0003s10550	POPTR_0003s10550 (0:919)	scaffold_3:11487009-11487426(-) (9)	NA	Q07G10	Alkylated DNA repair protein alkB homolog 8	AT1G31600.3	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g51360.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative"	Medtr5g026160.1	RNA-binding region RNP-1 (RNA recognition motif); 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.50248.1.S1_s_at	C	C1S	POPTR_0003s15510	POPTR_0003s15510 (0:852)	scaffold_3:15260742-15261239(+) (11)	NA	NA	NA	AT2G34920.1	RING/U-box superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5055.1.A1_at	C	C1S	POPTR_0004s03490	POPTR_0004s03490 (0:1054)	scaffold_4:2421715-2421901(+) (10)	NA	O65418	Anaphase-promoting complex subunit 4	AT4G21530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g54490.1	"nucleotide binding protein, putative, expressed"	Medtr4g125250.1	"nucleotide binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.50598.1.A1_at	C	C1S	POPTR_0011s15790	POPTR_0011s15790 (0:51)	NA	NA	NA	NA	AT2G36840.1	ACT-like superfamily protein 	LOC_Os09g39740.1	"ACT domain containing protein, expressed"	Medtr7g124000.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.50986.1.S1_at	C	C1S	POPTR_0007s06170	POPTR_0007s06170 (0:837)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.5185.1.S1_at	C	C1S	POPTR_0007s01970	POPTR_0007s01970 (0:1707)	scaffold_7:1123735-1124370(+) (11)	NA	NA	NA	AT3G59430.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.52514.1.A1_at	C	C2S	POPTR_0015s08510	POPTR_0015s08510 (0:509)//POPTR_0559s00200 (0:497)	scaffold_559:1587-1884(-) (11)	NA	NA	NA	AT5G62865.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). 	LOC_Os02g50940.1	"NHL repeat-containing protein, putative, expressed"	Medtr8g125480.1	"IS10 transposase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.53314.1.A1_at	C	C1S	POPTR_0004s23900	POPTR_0004s23900 (0:292)	scaffold_4:22533145-22533182(-) (11)	NA	NA	NA	AT1G14450.1	NADH dehydrogenase (ubiquinone)s 	LOC_Os02g35610.1	expressed protein	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity	GO:0005739|mitochondrion
PtpAffx.54323.1.S1_at	C	C1S	POPTR_0010s02250	POPTR_0010s02250 (0:1864)	NA	NA	Q8VY89	Anaphase-promoting complex subunit 7	AT2G39090.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os05g05720.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr2g025010.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.54489.1.S1_at	C	C1S	POPTR_0008s08780	POPTR_0008s08780 (0:758)	NA	NA	Q84NC5	MADS-box transcription factor 25	AT2G03060.2	AGAMOUS-like 30 	LOC_Os11g43740.1	"OsMADS68 - MADS-box family gene with MIKC* type-box, expressed"	Medtr5g044830.1	"Transcription factor, MADS-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.5653.1.A1_at	C	C1S	POPTR_0008s19880	POPTR_0008s19880 (0:5284)	scaffold_8:13716772-13716981(-) (11)	NA	NA	NA	AT1G27090.1	glycine-rich protein 	LOC_Os03g48260.1	expressed protein	Medtr5g038980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.57161.1.A1_at	C	C1S	POPTR_0009s15750	POPTR_0009s15750 (0:346)	scaffold_9:12114937-12114997(-) (11)	NA	Q3T0Q6	Cellular nucleic acid-binding protein	AT3G43590.1	zinc knuckle (CCHC-type) family protein 	LOC_Os11g36480.2	"zinc knuckle domain containing protein, expressed"	Medtr3g110690.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.58195.2.S1_at	C	C1S	POPTR_0010s14100	POPTR_0010s14100 (0:2027)	scaffold_10:13791604-13791788(-) (9)	NA	P10897	Cytochrome b561	AT1G26100.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os08g29520.1	"cytochrome b561, putative, expressed"	Medtr5g069530.2	Cytochrome b561 / ferric reductase transmembrane 	NA	NA	GO:0016021|integral to membrane
PtpAffx.59140.3.S1_at	C	C1S	POPTR_0010s06845	POPTR_0010s06845 (0:4408)	NA	NA	Q9CR64	Protein kish-A	AT5G20165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g16255.1	"transmembrane protein 167 precursor, putative, expressed"	Medtr3g103570.1	Protein of unknown function DUF1242 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.59512.1.A1_at	C	C1S	POPTR_0017s08220	POPTR_0017s08220 (0:96)	NA	NA	NA	NA	AT4G13630.2	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6000.1.A1_at	C	C1A	POPTR_0001s03750	POPTR_0001s03750 (0:450)	scaffold_1:3021382-3021495(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.61046.1.S1_at	C	C1S	POPTR_0011s11850	POPTR_0011s11850 (0:2)	NA	NA	Q05047	Secologanin synthase	AT3G14620.1	"cytochrome P450, family 72, subfamily A, polypeptide 8 "	LOC_Os01g43710.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.61626.1.S1_a_at	C	C1S	POPTR_0003s11570	POPTR_0003s11570 (0:3139)	scaffold_3:12363324-12363507(-) (11)	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT4G12110.1	sterol-4alpha-methyl oxidase 1-1 	LOC_Os10g39810.1	"fatty acid hydroxylase, putative, expressed"	Medtr8g106630.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.61867.1.S1_at	C	C1S	POPTR_0014s16280	POPTR_0014s16280 (0:1751)	NA	NA	P36183	Endoplasmin homolog	AT3G07770.1	HEAT SHOCK PROTEIN 89.1 	LOC_Os12g32986.1	"heat shock protein, putative, expressed"	Medtr5g105030.2	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.62428.1.A1_at	C	C1A	POPTR_0006s13870	POPTR_0006s13870 (0:94)	scaffold_6:11053375-11053550(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63315.1.A1_at	C	C1S	POPTR_0001s25475	POPTR_0001s25475 (0:682)	scaffold_1:24586593-24587074(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63417.1.A1_at	C	C1S	POPTR_0001s01620	POPTR_0001s01620 (0:280)	scaffold_1:1212463-1213562(+) (9)	NA	NA	NA	AT2G35550.1	basic pentacysteine 7 	LOC_Os10g02584.3	"GAGA-binding protein, putative, expressed"	Medtr4g151960.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63452.1.S1_at	C	C1S	POPTR_0003s10500	POPTR_0003s10500 (0:290)	scaffold_3:11450947-11451443(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.63700.1.S1_at	C	C1S	POPTR_0002s05230	POPTR_0002s05230 (0:214)	scaffold_2:3382847-3383286(-) (10)	NA	Q99PP7	E3 ubiquitin-protein ligase TRIM33	AT5G36740.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os07g07690.2	"PHD-finger domain containing protein, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	NA
PtpAffx.6465.1.A1_at	C	C1S	POPTR_0013s12460	POPTR_0013s12460 (0:423)	NA	NA	NA	NA	AT3G53690.1	RING/U-box superfamily protein 	LOC_Os08g35060.1	"protein binding protein, putative, expressed"	Medtr8g026380.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.64731.1.S1_at	C	C1S	POPTR_0019s10900	POPTR_0019s10900 (0:66)	NA	NA	Q9C8P8	Transcription factor bHLH80	AT1G35460.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g147140.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6502.1.A1_at	C	C1S	POPTR_0001s23710	POPTR_0001s23710 (0:957)	scaffold_1:23097465-23097733(-) (11)	NA	Q9AUE0	Callose synthase 1	AT1G05570.1	callose synthase 1 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.65962.1.S1_at	C	C1S	POPTR_0002s10490	POPTR_0002s10490 (0:203)	NA	NA	NA	NA	AT1G09740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g52314.1	"BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed"	Medtr5g075020.3	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
PtpAffx.66659.1.S1_at	C	C1S	POPTR_0006s06160	POPTR_0006s06160 (0:11)	scaffold_6:4379128-4379555(-) (10)	NA	Q93VD3	CBL-interacting serine/threonine-protein kinase 23	AT1G30270.1	CBL-interacting protein kinase 23 	LOC_Os07g05620.2	"CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g056750.1	Protein kinase; NAF; 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.67460.1.S1_at	C	C1S	POPTR_0002s18860	POPTR_0002s18860 (0:2269)	scaffold_2:14764161-14764264(-) (11)	NA	O80725	ABC transporter B family member 4	AT2G47000.1	ATP binding cassette subfamily B4 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.67649.1.A1_at	C	C1S	POPTR_0018s11950	POPTR_0018s11950 (0:220)	scaffold_18:12588526-12588612(+) (11)	NA	NA	NA	AT2G24300.2	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.67651.1.A1_at	C	C1S	POPTR_0004s17850	POPTR_0004s17850 (0:77)	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.6778.1.A1_at	C	C1S	POPTR_0010s22360	POPTR_0010s22360 (0:1715)	scaffold_10:19320542-19320960(+) (11)	NA	Q8VYK4	Nuclear transcription factor Y subunit B-8	AT2G37060.3	"nuclear factor Y, subunit B8 "	LOC_Os01g61810.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr1g086990.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.69239.1.A1_at	C	C1S	POPTR_0010s13960	POPTR_0010s13960 (0:140)	scaffold_10:13663384-13663841(+) (11)	NA	Q0V7R1	Probable galacturonosyltransferase-like 3	AT1G13250.1	galacturonosyltransferase-like 3 	LOC_Os03g24510.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr3g123120.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.69642.1.A1_at	C	C1S	POPTR_0019s02630	POPTR_0019s02630 (0:527)	scaffold_19:2449774-2450270(+) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.70440.1.A1_at	C	C1S	POPTR_0001s36940	POPTR_0001s36940 (0:1729)	scaffold_1:35747395-35748478(+) (9)	NA	Q5PNS0	PHD finger protein At3g20280	AT1G50620.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g20410.1	"BAH domain containing protein, expressed"	Medtr5g101370.1	"Zinc finger, FYVE/PHD-type "	NA	GO:0003677|DNA binding	NA
PtpAffx.70814.1.S1_at	C	C1S	POPTR_0003s02890	POPTR_0003s02890 (0:446)	scaffold_3:3024830-3024964(-) (11)	NA	O82155	Dof zinc finger protein DOF1.7	AT1G51700.1	DOF zinc finger protein 1 	LOC_Os01g09720.1	"dof zinc finger domain containing protein, putative"	AC235757_43.1	"Zinc finger, Dof-type AC235757.1 157398-155752 E EGN_Mt090430 200"	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.71512.1.A1_at	C	C1S	POPTR_0007s11950	POPTR_0007s11950 (0:105)	scaffold_7:12293252-12293846(+) (11)	NA	NA	NA	AT3G50380.1	Protein of unknown function (DUF1162) 	LOC_Os12g40279.2	"protein kinase domain containing protein, expressed"	NA	NA	GO:0008104|protein localization	NA	NA
PtpAffx.73363.2.S1_at	C	C1S	POPTR_0014s18550	POPTR_0014s18550 (1:1093)	scaffold_14:15860860-15864648(-) (9)	NA	NA	NA	AT4G28740.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g42800.1	"photosystem-II repair protein, putative, expressed"	Medtr7g130350.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.73836.1.S1_at	C	C2A	POPTR_0017s00830	POPTR_0017s00840 (0:2495)//POPTR_0017s00830 (0:1495)	scaffold_17:2396456-2410904(+) (10)	NA	Q6R3K4	Probable metal-nicotianamine transporter YSL8	AT1G48370.1	YELLOW STRIPE like 8 	LOC_Os02g42220.1	"transposon protein, putative, unclassified, expressed"	Medtr6g089710.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.75623.1.A1_at	C	C2S	POPTR_0018s03810	POPTR_0018s03810 (0:1826)//POPTR_0018s03820 (0:1774)	NA	NA	Q9LRR5	Putative disease resistance protein At3g14460	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g36920.1	"disease resistance protein, putative, expressed"	Medtr3g030870.1	NB-ARC 	NA	GO:0005515|protein binding	NA
PtpAffx.75680.1.A1_at	C	C1S	POPTR_0014s00280	POPTR_0014s00280 (0:263)	scaffold_14:101343-101796(-) (10)	NA	Q9SAK5	Myb family transcription factor APL	AT3G13040.2	myb-like HTH transcriptional regulator family protein 	LOC_Os06g49040.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.759.1.S1_at	C	C1S	POPTR_0014s12380	POPTR_0014s12380 (0:2613)	scaffold_14:9135006-9135085(-) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.79471.1.S1_at	C	C1S	POPTR_0001s35980	POPTR_0001s35980 (0:835)	NA	NA	NA	NA	AT5G14370.1	CCT motif family protein 	NA	NA	Medtr7g032090.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.80385.1.A1_at	C	C1S	POPTR_0453s00230	POPTR_0453s00230 (0:30)	scaffold_16:2919441-2919541(+) (10)//scaffold_453:17594-17694(-) (10)	NA	Q9SAK5	Myb family transcription factor APL	AT5G06800.1	myb-like HTH transcriptional regulator family protein 	LOC_Os04g56990.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g111700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82017.1.A1_a_at	C	C1S	POPTR_0006s10000	POPTR_0006s10000 (0:372)	scaffold_6:7431439-7431471(-) (9)//scaffold_6:7431503-7431535(-) (9)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g29790.1	"receptor kinase, putative"	Medtr5g026130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.82293.1.A1_at	C	C1S	POPTR_0011s13860	POPTR_0011s13860 (0:973)	NA	NA	Q9CXF4	TBC1 domain family member 15	AT5G54780.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os11g37690.1	"TBC domain containing protein, expressed"	Medtr2g097180.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.823.1.S1_at	C	C1S	POPTR_0002s01270	POPTR_0002s01270 (0:169)	scaffold_2:668660-669008(+) (11)	NA	NA	NA	AT1G76250.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 74 Blast hits to 74 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os02g02730.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8232.1.S1_at	C	C1S	POPTR_0016s14010	POPTR_0016s14010 (0:27)	scaffold_16:13223865-13224006(+) (10)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT3G51710.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os01g61020.1	"curculin-like lectin family protein, putative"	Medtr7g077850.1	Curculin-like (mannose-binding) lectin; N/apple PAN 	NA	GO:0005529|sugar binding	NA
PtpAffx.82571.1.A1_at	C	C1S	POPTR_0003s11000	POPTR_0003s11000 (0:789)	scaffold_3:11841543-11842066(-) (11)	NA	Q9DBN9	Probable ATP-dependent RNA helicase DDX59	AT3G02065.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g10770.2	"DEAD-box ATP-dependent RNA helicase 41, putative, expressed"	Medtr8g105900.1	"Zinc finger, CCHC-type; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.82808.1.S1_at	C	C1S	POPTR_0017s06060	POPTR_0017s06060 (0:1590)	scaffold_17:4703782-4704119(+) (10)	NA	Q9LQ14	"Pentatricopeptide repeat-containing protein At1g62930, chloroplastic"	AT1G62930.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g40020.1	"PPR repeat containing protein, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8403.1.S1_at	C	C1S	POPTR_0004s21470	POPTR_0004s21470 (0:2812)	scaffold_4:20590451-20590878(+) (9)	NA	Q94743	Sorcin	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.84308.1.A1_at	C	C1S	POPTR_0014s03470	POPTR_0014s03470 (0:70)	NA	NA	NA	NA	AT2G26520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g148340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8561.2.A1_a_at	C	C1S	POPTR_0008s04390	POPTR_0008s04390 (0:43)	NA	NA	Q9ARD5	Low temperature-induced protein lt101.2	AT2G38905.1	Low temperature and salt responsive protein family 	LOC_Os03g17790.1	"OsRCI2-5 - Putative low temperature and salt responsive protein, expressed"	Medtr7g134790.1	Protein of unknown function UPF0057 	NA	NA	GO:0016021|integral to membrane
PtpAffx.8561.2.A1_at	C	C1S	POPTR_0008s04390	POPTR_0008s04390 (0:43)	NA	NA	Q9ARD5	Low temperature-induced protein lt101.2	AT2G38905.1	Low temperature and salt responsive protein family 	LOC_Os03g17790.1	"OsRCI2-5 - Putative low temperature and salt responsive protein, expressed"	Medtr7g134790.1	Protein of unknown function UPF0057 	NA	NA	GO:0016021|integral to membrane
PtpAffx.8577.1.S1_at	C	C1S	POPTR_0005s17230	POPTR_0005s17230 (0:1119)	NA	NA	NA	NA	AT4G08950.1	Phosphate-responsive 1 family protein 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr5g073360.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86753.2.A1_at	C	C1S	POPTR_0007s09740	POPTR_0007s09740 (0:1190)	NA	NA	P55034	26S proteasome non-ATPase regulatory subunit 4	AT4G38630.1	regulatory particle non-ATPase 10 	LOC_Os03g13970.2	"26S proteasome non-ATPase regulatory subunit 4, putative, expressed"	Medtr5g022350.1	"von Willebrand factor, type A; Ubiquitin interacting motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.86830.1.A1_at	C	C1S	POPTR_0003s10570	POPTR_0003s10570 (0:308)	NA	NA	Q9FH80	Beta-amylase 8	AT5G45300.1	beta-amylase 2 	LOC_Os02g03690.1	"beta-amylase, putative, expressed"	Medtr5g026370.1	"Glycoside hydrolase, family 14; BZR1, transcriptional repressor "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.86916.1.A1_at	C	C1S	POPTR_0012s05960	POPTR_0012s05960 (0:5564)	scaffold_12:5950130-5956422(+) (11)	NA	Q42429	Agamous-like MADS-box protein AGL8 homolog	AT1G69120.1	K-box region and MADS-box transcription factor family protein  	LOC_Os03g54160.2	"OsMADS14 - MADS-box family gene with MIKCc type-box, expressed"	Medtr8g077590.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.8745.1.S1_at	C	C1S	POPTR_0017s07520	POPTR_0017s07520 (0:1062)	scaffold_17:5857369-5857907(+) (11)	NA	Q9FY69	Transcription factor bHLH143	AT5G09460.1	sequence-specific DNA binding transcription factors;transcription regulators 	LOC_Os03g27390.2	"CPuORF35 - conserved peptide uORF-containing transcript, expressed"	Medtr2g009410.1	"transcription factor/ transcription regulator, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88428.1.A1_at	C	C1S	POPTR_0008s10000	POPTR_0008s10000 (0:271)	scaffold_8:6239960-6240175(+) (10)	NA	Q54LB8	Putative vacuolar protein sorting-associated protein 13A	AT1G48090.1	calcium-dependent lipid-binding family protein 	LOC_Os02g27110.1	expressed protein	Medtr5g013950.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.88515.1.A1_at	C	C1S	POPTR_0019s04510	POPTR_0019s04510 (0:189)	NA	NA	NA	NA	AT5G18310.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g143270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.89587.1.S1_at	C	C1S	POPTR_0002s24770	POPTR_0002s24770 (0:2672)	NA	NA	Q09020	Wound-induced basic protein	AT3G07230.1	wound-responsive protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.8981.2.A1_at	C	C2S	POPTR_0002s09780	POPTR_0002s09780 (0:2541)//POPTR_0002s09790 (0:280)	scaffold_2:7013988-7014729(-) (9)	NA	Q9SA00	5'-adenylylsulfate reductase-like 4	AT1G34780.1	APR-like 4 	LOC_Os02g51850.1	"OsAPRL3  adenosine 5'-phosphosulfate reductase-like OsAPRL3, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.90753.1.S1_a_at	C	C1A	POPTR_0001s17760	POPTR_0001s17760 (0:31)	scaffold_1:14614895-14614988(-) (11)//scaffold_1:14616927-14616990(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.92227.1.S1_at	C	C1S	POPTR_0004s05750	POPTR_0004s05750 (0:545)	NA	NA	Q94C70	Nucleobase-ascorbate transporter 2	AT2G34190.1	Xanthine/uracil permease family protein 	LOC_Os01g55500.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr4g134900.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.92328.1.S1_at	C	C1S	POPTR_0010s09750	POPTR_0010s09750 (0:22)	scaffold_10:10411841-10412008(-) (10)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os03g06340.1	"XS domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.9463.1.S1_at	C	C1S	POPTR_0005s02100	POPTR_0005s02100 (0:0)	scaffold_5:1376482-1376696(+) (11)	NA	O81635	Kinesin-4	AT2G47500.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.94675.1.A1_at	C	C1S	POPTR_0008s03220	POPTR_0008s03220 (0:77)	scaffold_8:1687456-1687592(-) (11)	NA	NA	NA	AT5G04390.1	C2H2-type zinc finger family protein 	LOC_Os02g57790.1	ZOS2-19 - C2H2 zinc finger protein	Medtr4g076150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.95804.1.A1_at	C	C1S	POPTR_0003s03140	POPTR_0003s03140 (0:298)	scaffold_3:3526676-3527045(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G56890.1	Protein kinase superfamily protein 	LOC_Os01g09860.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g045880.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.9866.1.S1_at	C	C1S	POPTR_0001s35710	POPTR_0001s35710 (0:200)	scaffold_1:34039840-34040080(-) (9)	NA	O14802	DNA-directed RNA polymerase III subunit RPC1	AT5G60040.1	nuclear RNA polymerase C1 	LOC_Os04g41490.1	"DNA-directed RNA polymerase III subunit RPC1, putative, expressed"	Medtr4g079650.1	"RNA polymerase, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.99961.1.A1_at	C	C1S	POPTR_0001s30000	POPTR_0001s30000 (0:410)	scaffold_1:28576884-28577105(+) (9)	NA	NA	NA	AT1G49950.1	telomere repeat binding factor 1 	LOC_Os12g41920.3	"single myb histone, putative, expressed"	Medtr8g101640.1	"Linker histone, N-terminal; Homeodomain-like "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
AFFX-BioB-3_at	Control	R	AFFX-BioB-3	AFFX-BioB-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-BioB-5_at	Control	R	AFFX-BioB-5	AFFX-BioB-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-BioB-M_at	Control	R	AFFX-BioB-M	AFFX-BioB-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-BioC-3_at	Control	R	AFFX-BioC-3	AFFX-BioC-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-BioC-5_at	Control	R	AFFX-BioC-5	AFFX-BioC-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-BioDn-3_at	Control	R	AFFX-BioDn-3	AFFX-BioDn-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-BioDn-5_at	Control	R	AFFX-BioDn-5	AFFX-BioDn-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-CreX-3_at	Control	R	AFFX-CreX-3	AFFX-CreX-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-CreX-5_at	Control	R	AFFX-CreX-5	AFFX-CreX-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-DapX-3_at	Control	R	AFFX-DapX-3	AFFX-DapX-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-DapX-5_at	Control	R	AFFX-DapX-5	AFFX-DapX-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-DapX-M_at	Control	R	AFFX-DapX-M	AFFX-DapX-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-LysX-3_at	Control	R	AFFX-LysX-3	AFFX-LysX-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-LysX-5_at	Control	R	AFFX-LysX-5	AFFX-LysX-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-LysX-M_at	Control	R	AFFX-LysX-M	AFFX-LysX-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-PheX-3_at	Control	R	AFFX-PheX-3	AFFX-PheX-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-PheX-5_at	Control	R	AFFX-PheX-5	AFFX-PheX-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-PheX-M_at	Control	R	AFFX-PheX-M	AFFX-PheX-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-actin-3_s_at	Control	A1TS	POPTR_0001s31700	POPTR_0001s31700 (11)	scaffold_1:30055038-30055207(-) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
AFFX-Ptp-actin-5_a_at	Control	A2TS	POPTR_0001s31700	POPTR_0001s31700 (11)//POPTR_0019s02630 (11)	scaffold_1:30056499-30056534(-) (11)//scaffold_19:2444065-2444100(+) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
AFFX-Ptp-actin-5_at	Control	A1TS	POPTR_0001s31700	POPTR_0001s31700 (11)	scaffold_1:30056697-30057803(-) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
AFFX-Ptp-actin-5_x_at	Control	A1TS	POPTR_0001s31700	POPTR_0001s31700 (11)	scaffold_1:30056491-30057803(-) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
AFFX-Ptp-actin-M_s_at	Control	A2TS	POPTR_0001s31700	POPTR_0001s31700 (11)//POPTR_0019s02630 (11)	scaffold_1:30055993-30056301(-) (11)//scaffold_19:2444298-2444606(+) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
AFFX-Ptp-ef1a-3_s_at	Control	A2TS	POPTR_0010s22570	POPTR_0010s22620 (11)//POPTR_0010s22570 (11)	scaffold_10:19440749-19440988(+) (11)//scaffold_10:19455155-19455394(-) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
AFFX-Ptp-ef1a-3_x_at	Control	A2TS	POPTR_0010s22570	POPTR_0010s22620 (11)//POPTR_0010s22570 (11)	scaffold_10:19435048-19441105(+) (11)//scaffold_10:19452686-19455426(-) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
AFFX-Ptp-ef1a-5_x_at	Control	A3TS	POPTR_0010s22560	POPTR_0010s22560 (11)//POPTR_0966s00200 (11)//POPTR_0010s22570 (10)	scaffold_10:19433831-19434247(+) (11)//scaffold_10:19439436-19439850(+) (10)//scaffold_966:1535-1951(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
AFFX-Ptp-ef1a-M_x_at	Control	A3TS	POPTR_0010s22560	POPTR_0010s22560 (10)//POPTR_0966s00200 (10)//POPTR_0010s22620 (10)	scaffold_10:19434314-19440234(+) (11)//scaffold_10:19455909-19456226(-) (10)//scaffold_966:2018-2322(+) (10)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
AFFX-Ptp-gapdh-3_at	Control	R	CV236562	CV236562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-gapdh-5_at	Control	R	CV236562	CV236562	scaffold_2:19367193-19368308(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-gapdh-M_at	Control	A1TS	POPTR_0002s22600	POPTR_0002s22600 (11)	scaffold_2:19366164-19366630(-) (11)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
AFFX-Ptp-r2-Bs-dap-3_at	Control	R	AFFX-Ptp-r2-Bs-dap-3	AFFX-Ptp-r2-Bs-dap-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-dap-5_at	Control	R	AFFX-Ptp-r2-Bs-dap-5	AFFX-Ptp-r2-Bs-dap-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-dap-M_at	Control	R	AFFX-Ptp-r2-Bs-dap-M	AFFX-Ptp-r2-Bs-dap-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-lys-3_at	Control	R	AFFX-Ptp-r2-Bs-lys-3	AFFX-Ptp-r2-Bs-lys-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-lys-5_at	Control	R	AFFX-Ptp-r2-Bs-lys-5	AFFX-Ptp-r2-Bs-lys-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-lys-M_at	Control	R	AFFX-Ptp-r2-Bs-lys-M	AFFX-Ptp-r2-Bs-lys-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-phe-3_at	Control	R	AFFX-Ptp-r2-Bs-phe-3	AFFX-Ptp-r2-Bs-phe-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-phe-5_at	Control	R	AFFX-Ptp-r2-Bs-phe-5	AFFX-Ptp-r2-Bs-phe-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-phe-M_at	Control	R	AFFX-Ptp-r2-Bs-phe-M	AFFX-Ptp-r2-Bs-phe-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-thr-3_s_at	Control	R	AFFX-Ptp-r2-Bs-thr-3	AFFX-Ptp-r2-Bs-thr-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-thr-5_s_at	Control	R	AFFX-Ptp-r2-Bs-thr-5	AFFX-Ptp-r2-Bs-thr-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Bs-thr-M_s_at	Control	R	AFFX-Ptp-r2-Bs-thr-M	AFFX-Ptp-r2-Bs-thr-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Ec-bioB-3_at	Control	R	AFFX-Ptp-r2-Ec-bioB-3	AFFX-Ptp-r2-Ec-bioB-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Ec-bioB-3_s_at	Control	R	AFFX-Ptp-r2-Ec-bioB-3	AFFX-Ptp-r2-Ec-bioB-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Ec-bioB-5_at	Control	R	AFFX-Ptp-r2-Ec-bioB-5	AFFX-Ptp-r2-Ec-bioB-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Ec-bioB-5_s_at	Control	R	AFFX-Ptp-r2-Ec-bioB-5	AFFX-Ptp-r2-Ec-bioB-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Ec-bioB-M_s_at	Control	R	AFFX-Ptp-r2-Ec-bioB-M	AFFX-Ptp-r2-Ec-bioB-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Ec-bioC-3_at	Control	R	AFFX-Ptp-r2-Ec-bioC-3	AFFX-Ptp-r2-Ec-bioC-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Ec-bioC-5_at	Control	R	AFFX-Ptp-r2-Ec-bioC-5	AFFX-Ptp-r2-Ec-bioC-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Ec-bioD-3_at	Control	R	AFFX-Ptp-r2-Ec-bioD-3	AFFX-Ptp-r2-Ec-bioD-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-Ec-bioD-5_at	Control	R	AFFX-Ptp-r2-Ec-bioD-5	AFFX-Ptp-r2-Ec-bioD-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-P1-cre-3_s_at	Control	R	AFFX-Ptp-r2-P1-cre-3	AFFX-Ptp-r2-P1-cre-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-r2-P1-cre-5_s_at	Control	R	AFFX-Ptp-r2-P1-cre-5	AFFX-Ptp-r2-P1-cre-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-TrpnX-3_at	Control	R	AFFX-Ptp-TrpnX-3	AFFX-Ptp-TrpnX-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-TrpnX-5_at	Control	R	AFFX-Ptp-TrpnX-5	AFFX-Ptp-TrpnX-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-Ptp-TrpnX-M_at	Control	R	AFFX-Ptp-TrpnX-M	AFFX-Ptp-TrpnX-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-dap-3_at	Control	R	AFFX-r2-Bs-dap-3	AFFX-r2-Bs-dap-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-dap-5_at	Control	R	AFFX-r2-Bs-dap-5	AFFX-r2-Bs-dap-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-dap-M_at	Control	R	AFFX-r2-Bs-dap-M	AFFX-r2-Bs-dap-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-lys-3_at	Control	R	AFFX-r2-Bs-lys-3	AFFX-r2-Bs-lys-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-lys-5_at	Control	R	AFFX-r2-Bs-lys-5	AFFX-r2-Bs-lys-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-lys-M_at	Control	R	AFFX-r2-Bs-lys-M	AFFX-r2-Bs-lys-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-phe-3_at	Control	R	AFFX-r2-Bs-phe-3	AFFX-r2-Bs-phe-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-phe-5_at	Control	R	AFFX-r2-Bs-phe-5	AFFX-r2-Bs-phe-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-phe-M_at	Control	R	AFFX-r2-Bs-phe-M	AFFX-r2-Bs-phe-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-thr-3_s_at	Control	R	AFFX-r2-Bs-thr-3	AFFX-r2-Bs-thr-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-thr-5_s_at	Control	R	AFFX-r2-Bs-thr-5	AFFX-r2-Bs-thr-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Bs-thr-M_s_at	Control	R	AFFX-r2-Bs-thr-M	AFFX-r2-Bs-thr-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Ec-bioB-3_at	Control	R	AFFX-r2-Ec-bioB-3	AFFX-r2-Ec-bioB-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Ec-bioB-5_at	Control	R	AFFX-r2-Ec-bioB-5	AFFX-r2-Ec-bioB-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Ec-bioB-M_at	Control	R	AFFX-r2-Ec-bioB-M	AFFX-r2-Ec-bioB-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Ec-bioC-3_at	Control	R	AFFX-r2-Ec-bioC-3	AFFX-r2-Ec-bioC-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Ec-bioC-5_at	Control	R	AFFX-r2-Ec-bioC-5	AFFX-r2-Ec-bioC-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Ec-bioD-3_at	Control	R	AFFX-r2-Ec-bioD-3	AFFX-r2-Ec-bioD-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-Ec-bioD-5_at	Control	R	AFFX-r2-Ec-bioD-5	AFFX-r2-Ec-bioD-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-P1-cre-3_at	Control	R	AFFX-r2-P1-cre-3	AFFX-r2-P1-cre-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-P1-cre-5_at	Control	R	AFFX-r2-P1-cre-5	AFFX-r2-P1-cre-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagA_at	Control	R	AFFX-r2-TagA	AFFX-r2-TagA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagB_at	Control	R	AFFX-r2-TagB	AFFX-r2-TagB	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagC_at	Control	R	AFFX-r2-TagC	AFFX-r2-TagC	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagD_at	Control	R	AFFX-r2-TagD	AFFX-r2-TagD	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagE_at	Control	R	AFFX-r2-TagE	AFFX-r2-TagE	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagF_at	Control	R	AFFX-r2-TagF	AFFX-r2-TagF	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagG_at	Control	R	AFFX-r2-TagG	AFFX-r2-TagG	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagH_at	Control	R	AFFX-r2-TagH	AFFX-r2-TagH	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagIN-3_at	Control	R	AFFX-r2-TagIN-3	AFFX-r2-TagIN-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagIN-5_at	Control	R	AFFX-r2-TagIN-5	AFFX-r2-TagIN-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagIN-M_at	Control	R	AFFX-r2-TagIN-M	AFFX-r2-TagIN-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagJ-3_at	Control	R	AFFX-r2-TagJ-3	AFFX-r2-TagJ-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagJ-5_at	Control	R	AFFX-r2-TagJ-5	AFFX-r2-TagJ-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagO-3_at	Control	R	AFFX-r2-TagO-3	AFFX-r2-TagO-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagO-5_at	Control	R	AFFX-r2-TagO-5	AFFX-r2-TagO-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagQ-3_at	Control	R	AFFX-r2-TagQ-3	AFFX-r2-TagQ-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-r2-TagQ-5_at	Control	R	AFFX-r2-TagQ-5	AFFX-r2-TagQ-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-ThrX-3_at	Control	R	AFFX-ThrX-3	AFFX-ThrX-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-ThrX-5_at	Control	R	AFFX-ThrX-5	AFFX-ThrX-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-ThrX-M_at	Control	R	AFFX-ThrX-M	AFFX-ThrX-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-TrpnX-3_at	Control	R	AFFX-TrpnX-3	AFFX-TrpnX-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-TrpnX-5_at	Control	R	AFFX-TrpnX-5	AFFX-TrpnX-5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
AFFX-TrpnX-M_at	Control	R	AFFX-TrpnX-M	AFFX-TrpnX-M	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-A00196-1_s_at	Control	R	RPTR-Ptp-A00196-1	RPTR-Ptp-A00196-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-A06498-1_at	Control	R	RPTR-Ptp-A06498-1	RPTR-Ptp-A06498-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-A12338-1_at	Control	R	RPTR-Ptp-A12338-1	RPTR-Ptp-A12338-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AB076373-1_at	Control	R	RPTR-Ptp-AB076373-1	RPTR-Ptp-AB076373-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AE009032-1_at	Control	R	RPTR-Ptp-AE009032-1	RPTR-Ptp-AE009032-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AF062997-1_at	Control	R	RPTR-Ptp-AF062997-1	RPTR-Ptp-AF062997-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AF292559-1_at	Control	R	RPTR-Ptp-AF292559-1	RPTR-Ptp-AF292559-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AF292559-2_s_at	Control	R	RPTR-Ptp-AF292559-2	RPTR-Ptp-AF292559-2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AF292559-3_s_at	Control	R	RPTR-Ptp-AF292559-3	RPTR-Ptp-AF292559-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AF292559-4_s_at	Control	R	RPTR-Ptp-AF292559-4	RPTR-Ptp-AF292559-4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AF292560-1_s_at	Control	R	RPTR-Ptp-AF292560-1	RPTR-Ptp-AF292560-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AF298789-1_at	Control	R	RPTR-Ptp-AF298789-1	RPTR-Ptp-AF298789-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AF323980-1_at	Control	R	RPTR-Ptp-AF323980-1	RPTR-Ptp-AF323980-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AF403737-1_at	Control	R	RPTR-Ptp-AF403737-1	RPTR-Ptp-AF403737-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AJ002682-1_s_at	Control	R	RPTR-Ptp-AJ002682-1	RPTR-Ptp-AJ002682-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AJ002682-2_s_at	Control	R	RPTR-Ptp-AJ002682-2	RPTR-Ptp-AJ002682-2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AJ132968-1_at	Control	R	RPTR-Ptp-AJ132968-1	RPTR-Ptp-AJ132968-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AY056050-1_at	Control	R	RPTR-Ptp-AY056050-1	RPTR-Ptp-AY056050-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AY125353_at	Control	R	RPTR-Ptp-AY125353	RPTR-Ptp-AY125353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-AY342347_at	Control	R	RPTR-Ptp-AY342347	RPTR-Ptp-AY342347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-CVE247372-1_at	Control	R	RPTR-Ptp-CVE247372-1	RPTR-Ptp-CVE247372-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-E00696-1_s_at	Control	R	RPTR-Ptp-E00696-1	RPTR-Ptp-E00696-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-ECOLOXB_at	Control	R	RPTR-Ptp-ECOLOXB	RPTR-Ptp-ECOLOXB	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-ECOLOXL_at	Control	R	RPTR-Ptp-ECOLOXL	RPTR-Ptp-ECOLOXL	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-ECOLOXL_x_at	Control	R	RPTR-Ptp-ECOLOXL	RPTR-Ptp-ECOLOXL	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-J01347-1_at	Control	R	RPTR-Ptp-J01347-1	RPTR-Ptp-J01347-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-J01347-1_s_at	Control	R	RPTR-Ptp-J01347-1	RPTR-Ptp-J01347-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-J01347-2_at	Control	R	RPTR-Ptp-J01347-2	RPTR-Ptp-J01347-2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-J01347-3_at	Control	R	RPTR-Ptp-J01347-3	RPTR-Ptp-J01347-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-J01347-4_at	Control	R	RPTR-Ptp-J01347-4	RPTR-Ptp-J01347-4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-J01636-1_at	Control	R	RPTR-Ptp-J01636-1	RPTR-Ptp-J01636-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-J01636-3_at	Control	R	RPTR-Ptp-J01636-3	RPTR-Ptp-J01636-3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-J01636-4_at	Control	R	RPTR-Ptp-J01636-4	RPTR-Ptp-J01636-4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-J03196-1_at	Control	R	RPTR-Ptp-J03196-1	RPTR-Ptp-J03196-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-K01193-1_at	Control	R	RPTR-Ptp-K01193-1	RPTR-Ptp-K01193-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-K01486-1_at	Control	R	RPTR-Ptp-K01486-1	RPTR-Ptp-K01486-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-L36849-1_at	Control	R	RPTR-Ptp-L36849-1	RPTR-Ptp-L36849-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-M10961-1_at	Control	R	RPTR-Ptp-M10961-1	RPTR-Ptp-M10961-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-M10961-4_at	Control	R	RPTR-Ptp-M10961-4	RPTR-Ptp-M10961-4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-M15077-1_at	Control	R	RPTR-Ptp-M15077-1	RPTR-Ptp-M15077-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-M15077-1_s_at	Control	R	RPTR-Ptp-M15077-1	RPTR-Ptp-M15077-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-M57289-1_s_at	Control	R	RPTR-Ptp-M57289-1	RPTR-Ptp-M57289-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-M62653-1_at	Control	R	RPTR-Ptp-M62653-1	RPTR-Ptp-M62653-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-M62653-1_s_at	Control	R	RPTR-Ptp-M62653-1	RPTR-Ptp-M62653-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-NC_001669-1_at	Control	R	RPTR-Ptp-NC_001669-1	RPTR-Ptp-NC_001669-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-NC_001669-2_at	Control	R	RPTR-Ptp-NC_001669-2	RPTR-Ptp-NC_001669-2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-NC_002086-1_s_at	Control	R	RPTR-Ptp-NC_002086-1	RPTR-Ptp-NC_002086-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-NM_131175-1_at	Control	R	RPTR-Ptp-NM_131175-1	RPTR-Ptp-NM_131175-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-U43284-1_s_at	Control	R	RPTR-Ptp-U43284-1	RPTR-Ptp-U43284-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-U46493-1_s_at	Control	R	RPTR-Ptp-U46493-1	RPTR-Ptp-U46493-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-U47295-1_at	Control	R	RPTR-Ptp-U47295-1	RPTR-Ptp-U47295-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-U55943-1_at	Control	R	RPTR-Ptp-U55943-1	RPTR-Ptp-U55943-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-U57609-2_s_at	Control	R	RPTR-Ptp-U57609-2	RPTR-Ptp-U57609-2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-U89963-1_at	Control	R	RPTR-Ptp-U89963-1	RPTR-Ptp-U89963-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-U89963-1_s_at	Control	R	RPTR-Ptp-U89963-1	RPTR-Ptp-U89963-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-U89963-1_x_at	Control	R	RPTR-Ptp-U89963-1	RPTR-Ptp-U89963-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-V01555-1_at	Control	R	RPTR-Ptp-V01555-1	RPTR-Ptp-V01555-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-X03453-1_at	Control	R	RPTR-Ptp-X03453-1	RPTR-Ptp-X03453-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-X17220-1_at	Control	R	RPTR-Ptp-X17220-1	RPTR-Ptp-X17220-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-X58791-1_s_at	Control	R	RPTR-Ptp-X58791-1	RPTR-Ptp-X58791-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-X58791-2_s_at	Control	R	RPTR-Ptp-X58791-2	RPTR-Ptp-X58791-2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
RPTR-Ptp-XXU09476-1_at	Control	R	RPTR-Ptp-XXU09476-1	RPTR-Ptp-XXU09476-1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.100.1.S1_a_at	E	E	BU834161	BU834161	NA	NA	P14735	Insulin-degrading enzyme	AT2G41790.1	Insulinase (Peptidase family M16) family protein 	LOC_Os07g38260.1	"insulin-degrading enzyme, putative, expressed"	Medtr5g102730.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	NA	NA	NA
Ptp.100.2.S1_a_at	E	E	CK088962	CK088962	NA	NA	NA	NA	AT2G41790.1	Insulinase (Peptidase family M16) family protein 	LOC_Os07g38280.2	"insulin-degrading enzyme, putative, expressed"	NA	NA	NA	NA	NA
Ptp.100.2.S1_at	E	E	CK088962	CK088962	NA	NA	NA	NA	AT2G41790.1	Insulinase (Peptidase family M16) family protein 	LOC_Os07g38280.2	"insulin-degrading enzyme, putative, expressed"	NA	NA	NA	NA	NA
Ptp.1000.1.A1_at	E	E	CK089986	CK089986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1004.1.S1_at	E	E	CK090015	CK090015	NA	NA	NA	NA	AT4G13220.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g17830.3	expressed protein	NA	NA	NA	NA	NA
Ptp.1010.1.A1_at	E	E	CK090040	CK090040	NA	NA	Q66GR3	Transcription factor bHLH130	AT2G42280.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g117830.1	Helix-loop-helix DNA-binding 	NA	NA	NA
Ptp.1015.1.S1_at	E	E	CK091392	CK091392	scaffold_4:21356530-21356762(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1019.1.A1_at	E	E	CK090084	CK090084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1031.1.A1_at	E	E	CK090159	CK090159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1048.1.A1_at	E	E	CK090230	CK090230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1051.2.A1_at	E	E	CK090246	CK090246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1070.1.A1_at	E	E	CK090338	CK090338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1074.2.S1_a_at	E	E	BI129363	BI129363	scaffold_1:14066963-14069050(-) (10)	NA	NA	NA	AT4G25970.1	phosphatidylserine decarboxylase 3 	LOC_Os01g72940.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr2g008340.1	C2; Calcium-binding EF-hand; Phosphatidylserine decarboxylase 	NA	NA	NA
Ptp.1076.1.S1_at	E	E	CK093557	CK093557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1076.2.S1_at	E	E	CK090355	CK090355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1081.1.S1_at	E	E	CK089377	CK089377	NA	NA	NA	NA	AT5G25265.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g08180.1	expressed protein	Medtr8g042980.1	hypothetical protein 	NA	NA	NA
Ptp.1084.2.A1_a_at	E	E	DN502989	DN502989	scaffold_9:8792533-8792707(+) (11)	NA	Q8W3M4	Uncharacterized protein At4g06744	AT1G49750.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g40260.1	"uncharacterized protein At4g06744 precursor, putative, expressed"	Medtr1g023960.1	"Uncharacterized protein At4g06744 precursor, putative "	NA	NA	NA
Ptp.1085.2.S1_at	E	E	BU887765	BU887765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1091.1.A1_at	E	E	CK089585	CK089585	NA	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	NA	NA	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
Ptp.1101.1.A1_at	E	E	CK089941	CK089941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1103.1.A1_at	E	E	CK089956	CK089956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1108.1.A1_at	E	E	CV280255	CV280255	NA	NA	Q8LG76	Zinc finger protein CONSTANS-LIKE 6	AT1G68520.1	B-box type zinc finger protein with CCT domain 	LOC_Os03g50310.1	"CCT/B-box zinc finger protein, putative, expressed"	AC233660_36.1	CCT AC233660.2 135880-137006 E EGN_Mt090430 200	NA	NA	NA
Ptp.1117.1.A1_at	E	E	CK090262	CK090262	NA	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os06g44300.1	"WAX2, putative, expressed"	NA	NA	NA	NA	NA
Ptp.1123.1.A1_at	E	E	CK090330	CK090330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1124.1.A1_at	E	E	CK090332	CK090332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1128.1.A1_at	E	E	CK090359	CK090359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1136.1.S1_at	E	E	CK089871	CK089871	NA	NA	P32980	"ATP synthase delta chain, chloroplastic"	AT4G00895.1	"ATPase, F1 complex, OSCP/delta subunit protein "	LOC_Os02g51470.3	"ATP synthase F1, delta subunit family protein, putative, expressed"	Medtr7g145730.1	hypothetical protein 	NA	NA	NA
Ptp.1141.1.S1_at	E	E	CK090173	CK090173	NA	NA	NA	NA	AT4G34280.1	transducin family protein / WD-40 repeat family protein 	NA	NA	NA	NA	NA	NA	NA
Ptp.1153.2.S1_at	E	E	CK100713	CK100713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1157.1.A1_at	E	E	CK089362	CK089362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1158.1.A1_at	E	E	CK089363	CK089363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1163.1.A1_at	E	E	CK089530	CK089530	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1164.1.A1_at	E	E	CK089535	CK089535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1173.1.A1_at	E	E	CK089675	CK089675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1182.1.A1_at	E	E	CK089796	CK089796	NA	NA	NA	NA	AT5G20950.2	Glycosyl hydrolase family protein 	LOC_Os01g56510.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr7g102750.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	NA	NA	NA
Ptp.1206.2.A1_at	E	E	CK090115	CK090115	NA	NA	Q9SJ20	Ribonucleoside-diphosphate reductase large subunit	AT2G21790.1	ribonucleotide reductase 1 	LOC_Os06g07210.1	"ribonucleoside-diphosphate reductase large subunit, putative, expressed"	Medtr4g141590.1	"Ribonucleotide reductase R1 subunit, N-terminal; "	NA	NA	NA
Ptp.1207.1.S1_at	E	E	CK090118	CK090118	NA	NA	Q9XFB0	Putative axial regulator YABBY 2	AT1G08465.1	Plant-specific transcription factor YABBY family protein 	LOC_Os07g06620.1	"YABBY domain containing protein, putative, expressed"	Medtr2g104680.1	YABBY protein 	NA	NA	NA
Ptp.1211.1.A1_at	E	E	CK090301	CK090301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1214.1.A1_at	E	E	CK090315	CK090315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1215.1.A1_at	E	E	CK090318	CK090318	NA	NA	NA	NA	AT4G37360.1	"cytochrome P450, family 81, subfamily D, polypeptide 2 "	LOC_Os02g30090.1	"cytochrome P450, putative"	Medtr5g016390.1	Cytochrome P450 	NA	NA	NA
Ptp.1228.1.S1_at	E	E	CK093827	CK093827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1240.1.S1_at	E	E	BI125356	BI125356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1242.1.S1_at	E	E	CK092756	CK092756	scaffold_18:239211-239560(-) (9)	NA	NA	NA	NA	NA	LOC_Os08g28240.1	"carotenoid cleavage dioxygenase, putative"	NA	NA	NA	NA	NA
Ptp.125.1.A1_x_at	E	E	AF149014.1	AF149014.1	NA	NA	O23249	Cyclin-dependent kinases regulatory subunit 1	AT2G27960.1	cyclin-dependent kinase-subunit 1 	LOC_Os03g05300.1	"cyclin-dependent kinases regulatory subunit 1, putative, expressed"	Medtr4g075990.1	"Cyclin-dependent kinase, regulatory subunit "	NA	NA	NA
Ptp.1255.1.S1_at	E	E	CK092064	CK092064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1259.2.A1_at	E	E	CV230179	CV230179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1269.1.S1_at	E	E	DN490856	DN490856	NA	NA	NA	NA	AT4G17140.3	pleckstrin homology (PH) domain-containing protein 	LOC_Os10g41560.1	expressed protein	Medtr5g013990.1	"C2 domain-containing protein, related "	NA	NA	NA
Ptp.1270.1.S1_at	E	E	CX658069	CX658069	NA	NA	NA	NA	AT3G26780.1	Phosphoglycerate mutase family protein 	LOC_Os11g31880.1	"phosphoglycerate mutase, putative, expressed"	NA	NA	NA	NA	NA
Ptp.1275.1.S1_at	E	E	AF483268.1	AF483268.1	NA	NA	Q9XEX2	Peroxiredoxin-2B	AT1G65980.1	thioredoxin-dependent peroxidase 1 	LOC_Os01g48420.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	NA	NA
Ptp.1277.1.S1_at	E	E	CA825686	CA825686	scaffold_8:445272-445444(+) (11)	NA	Q06450	"ATP synthase subunit epsilon, mitochondrial"	AT1G51650.1	"ATP synthase epsilon chain, mitochondrial "	LOC_Os08g15170.1	"ATP synthase epsilon chain, mitochondrial, putative, expressed"	Medtr5g043990.1	Mitochondrial ATP synthase epsilon chain 	NA	NA	NA
Ptp.1277.1.S1_x_at	E	E	CA825686	CA825686	scaffold_8:443838-445444(+) (11)	NA	Q06450	"ATP synthase subunit epsilon, mitochondrial"	AT1G51650.1	"ATP synthase epsilon chain, mitochondrial "	LOC_Os08g15170.1	"ATP synthase epsilon chain, mitochondrial, putative, expressed"	Medtr5g043990.1	Mitochondrial ATP synthase epsilon chain 	NA	NA	NA
Ptp.1288.2.S1_at	E	E	CK092141	CK092141	NA	NA	A3KPF2	Probable histone-arginine methyltransferase CARM1B	AT3G06930.1	protein arginine methyltransferase 4B 	LOC_Os07g47500.4	"histone-arginine methyltransferase CARM1, putative, expressed"	Medtr8g138750.1	Methyltransferase small 	NA	NA	NA
Ptp.1311.1.S1_at	E	E	CK093433	CK093433	NA	NA	P19440	Gamma-glutamyltranspeptidase 1	AT4G29210.1	gamma-glutamyl transpeptidase 4 	LOC_Os01g05810.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr6g093830.1	Gamma-glutamyltranspeptidase 	NA	NA	NA
Ptp.1312.1.S1_at	E	E	AY935508.1	AY935508.1	NA	NA	Q9LFP3	Probable glycosyltransferase At5g11130	AT2G28110.1	Exostosin family protein 	LOC_Os03g01760.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	NA
Ptp.1318.1.S1_at	E	E	CV256946	CV256946	NA	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT3G06035.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	NA	NA	NA
Ptp.1319.2.A1_at	E	E	CK093395	CK093395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1335.1.S1_at	E	E	CK092974	CK092974	NA	NA	A0JP85	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.3	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr2g085690.1	"CCR4-Not complex component, Not1 "	NA	NA	NA
Ptp.1354.1.A1_at	E	E	CK093826	CK093826	NA	NA	NA	NA	AT1G29200.2	O-fucosyltransferase family protein 	LOC_Os06g35410.1	"growth regulator related protein, putative, expressed"	Medtr8g147250.1	Hypothetical plant protein 	NA	NA	NA
Ptp.1358.2.A1_at	E	E	CK092478	CK092478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1362.1.S1_at	E	E	CK089988	CK089988	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1369.1.A1_at	E	E	CV228220	CV228220	NA	NA	NA	NA	AT3G47550.6	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os09g24650.4	"zinc finger, C3HC4 type, putative, expressed"	Medtr5g044040.1	"Zinc finger, RING-type; RINGv "	NA	NA	NA
Ptp.1383.2.A1_at	E	E	CK092851	CK092851	NA	NA	NA	NA	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	NA	NA	NA	NA	NA
Ptp.1389.1.A1_at	E	E	CK093739	CK093739	NA	NA	NA	NA	AT5G32470.1	"Haem oxygenase-like, multi-helical "	LOC_Os08g45160.1	"TENA/THI-4 family protein, putative, expressed"	Medtr1g094180.1	TENA/THI-4 protein 	NA	NA	NA
Ptp.1395.1.A1_at	E	E	CK088427	CK088427	scaffold_11:14305841-14305972(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1409.1.S1_at	E	E	CK092732	CK092732	NA	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.2	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	NA	NA	NA
Ptp.1431.1.S1_at	E	E	CX654507	CX654507	NA	NA	O82528	60S ribosomal protein L15	AT4G16720.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	NA	NA	NA
Ptp.1432.1.S1_at	E	E	BU813399	BU813399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1436.1.S1_at	E	E	AF349443.1	AF349443.1	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1436.1.S1_x_at	E	E	AF349443.1	AF349443.1	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1438.1.S1_at	E	E	CK093536	CK093536	NA	NA	Q8LGH4	Cullin-4	AT5G46210.1	cullin4 	LOC_Os03g57290.1	"cullin, putative, expressed"	Medtr2g024510.1	Cullin; Winged helix repressor DNA-binding 	NA	NA	NA
Ptp.1448.1.S1_x_at	E	E	AY594297.1	AY594297.1	scaffold_6:6215590-6216118(+) (11)	NA	P30564	Metallothionein-like protein type 2	AT3G09390.1	metallothionein 2A 	LOC_Os01g05650.1	"metallothionein, putative, expressed"	Medtr7g068170.1	"Plant metallothionein, family 15 "	NA	NA	NA
Ptp.1448.2.S1_x_at	E	E	DN484011	DN484011	NA	NA	P30564	Metallothionein-like protein type 2	NA	NA	NA	NA	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	NA	NA
Ptp.1449.1.S1_s_at	E	E	DN495248	DN495248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1452.1.S1_at	E	E	CK089905	CK089905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1463.1.S1_at	E	E	BU884907	BU884907	NA	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.1	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	NA	NA	NA
Ptp.1467.1.S1_x_at	E	E	BU893941	BU893941	NA	NA	NA	NA	AT5G38760.1	Late embryogenesis abundant protein (LEA) family protein 	NA	NA	NA	NA	NA	NA	NA
Ptp.1469.1.S1_at	E	E	CK092683	CK092683	NA	NA	Q9LRR5	Putative disease resistance protein At3g14460	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	NA	NA	Medtr8g039520.1	NB-ARC 	NA	NA	NA
Ptp.1478.1.S1_x_at	E	E	CK095872	CK095872	NA	NA	P24805	Stem-specific protein TSJT1	AT5G19140.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os12g05050.1	"stem-specific protein TSJT1, putative, expressed"	AC233674_1.1	"Stem-specific protein TSJT1, related AC233674.1 2329-1 E EGN_Mt090430 200"	NA	NA	NA
Ptp.1484.1.S1_at	E	E	CK112034	CK112034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1516.1.S1_at	E	E	DN493748	DN493748	NA	NA	NA	NA	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	NA	NA	NA
Ptp.1517.1.S1_at	E	E	CK089318	CK089318	NA	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233659_18.1	"Stem-specific protein TSJT1, related AC233659.1 80671-78758 E EGN_Mt090430 200"	NA	NA	NA
Ptp.1517.1.S1_x_at	E	E	CK089318	CK089318	NA	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233659_18.1	"Stem-specific protein TSJT1, related AC233659.1 80671-78758 E EGN_Mt090430 200"	NA	NA	NA
Ptp.1530.1.S1_at	E	E	BP936243	BP936243	NA	NA	P24459	"ATP synthase subunit alpha, mitochondrial"	ATMG01190.1	ATP synthase subunit 1 	LOC_Os09g08910.1	"ATP synthase, putative, expressed"	Medtr1g006540.1	ATPase FliI/YscN 	NA	NA	NA
Ptp.1530.1.S1_s_at	E	E	BP936243	BP936243	NA	NA	P24459	"ATP synthase subunit alpha, mitochondrial"	ATMG01190.1	ATP synthase subunit 1 	LOC_Os09g08910.1	"ATP synthase, putative, expressed"	Medtr1g006540.1	ATPase FliI/YscN 	NA	NA	NA
Ptp.1530.1.S1_x_at	E	E	BP936243	BP936243	NA	NA	P24459	"ATP synthase subunit alpha, mitochondrial"	ATMG01190.1	ATP synthase subunit 1 	LOC_Os09g08910.1	"ATP synthase, putative, expressed"	Medtr1g006540.1	ATPase FliI/YscN 	NA	NA	NA
Ptp.1540.1.S1_a_at	E	E	CV229947	CV229947	NA	NA	P49608	"Aconitate hydratase, cytoplasmic"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr4g062500.1	"Aconitate hydratase, N-terminal; ; ; ; "	NA	NA	NA
Ptp.1541.2.S1_at	E	E	DN495656	DN495656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1545.1.S1_at	E	E	CX660078	CX660078	NA	NA	Q9C8U0	Flavin-containing monooxygenase FMO GS-OX-like 5	AT1G63370.1	Flavin-binding monooxygenase family protein 	LOC_Os10g40570.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr5g012290.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	NA	NA	NA
Ptp.1553.2.S1_at	E	E	CV243773	CV243773	NA	NA	Q84WU2	Ubiquitin carboxyl-terminal hydrolase 13	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g134250.1	MATH 	NA	NA	NA
Ptp.1561.1.S1_at	E	E	CK109422	CK109422	NA	NA	P27770	40S ribosomal protein S17	AT5G04800.4	Ribosomal S17 family protein 	LOC_Os10g27190.1	"40S ribosomal protein S17, putative, expressed"	AC146550_9.1	Ribosomal protein S17e AC146550.40 33438-32707 F EGN_Mt090430 200	NA	NA	NA
Ptp.1569.1.S1_at	E	E	CK110263	CK110263	NA	NA	P21772	40S ribosomal protein S26E	AT3G56340.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.1	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	NA	NA	NA
Ptp.157.2.S1_at	E	E	CK087811	CK087811	NA	NA	Q9ZRI7	Elongation factor 1-gamma 1	AT1G57720.2	"Translation elongation factor EF1B, gamma chain "	LOC_Os02g12800.5	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.2	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	NA	NA	NA
Ptp.1576.1.A1_s_at	E	E	CK109562	CK109562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1579.1.S1_at	E	E	CF230645	CF230645	NA	NA	NA	NA	AT4G27435.1	Protein of unknown function (DUF1218) 	LOC_Os07g27810.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	NA	NA	NA
Ptp.1586.2.S1_at	E	E	CV251358	CV251358	NA	NA	NA	NA	AT2G42610.2	Protein of unknown function (DUF640) 	LOC_Os02g41460.1	"DUF640 domain containing protein, putative, expressed"	Medtr2g111640.1	Protein of unknown function DUF640 	NA	NA	NA
Ptp.1591.1.S1_at	E	E	CV267457	CV267457	NA	NA	O24030	Proteasome subunit alpha type-7	AT5G66140.1	proteasome alpha subunit D2 	LOC_Os08g43540.1	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	NA	NA	NA
Ptp.16.2.S1_at	E	E	CV243804	CV243804	NA	NA	Q9LZG0	Adenosine kinase 2	AT5G03300.1	adenosine kinase 2 	LOC_Os02g41590.1	"kinase, pfkB family, putative, expressed"	Medtr1g076700.2	Adenosine kinase 	NA	NA	NA
Ptp.1604.1.A1_at	E	E	CK092045	CK092045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1605.1.A1_at	E	E	CK092069	CK092069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1615.1.A1_at	E	E	CK092200	CK092200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1620.1.A1_at	E	E	CK092238	CK092238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1621.2.A1_at	E	E	CV261960	CV261960	NA	NA	Q6ZIB9	UPF0016 protein 4	AT5G36290.2	Uncharacterized protein family (UPF0016) 	LOC_Os08g41670.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr7g089540.1	Protein of unknown function UPF0016 	NA	NA	NA
Ptp.1623.2.A1_at	E	E	CK092273	CK092273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1635.1.S1_at	E	E	CK092421	CK092421	NA	NA	Q43187	Soluble inorganic pyrophosphatase	AT3G53620.1	pyrophosphorylase 4 	LOC_Os05g02310.1	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr1g081230.1	Inorganic pyrophosphatase 	NA	NA	NA
Ptp.1645.1.A1_at	E	E	CK092591	CK092591	scaffold_8:7133072-7133252(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1649.1.A1_at	E	E	CK092628	CK092628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1657.1.A1_at	E	E	CK092723	CK092723	NA	NA	NA	NA	AT3G62600.1	DNAJ heat shock family protein 	LOC_Os05g06440.1	"dnaJ homolog subfamily B member 11 precursor, putative, expressed"	Medtr7g132750.1	Heat shock protein DnaJ 	NA	NA	NA
Ptp.1659.2.A1_at	E	E	CK092735	CK092735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1673.1.A1_at	E	E	CK092838	CK092838	NA	NA	NA	NA	AT4G24530.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr5g033490.2	Hypothetical plant protein 	NA	NA	NA
Ptp.1678.1.S1_at	E	E	CK092866	CK092866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1689.1.A1_at	E	E	BI130205	BI130205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.169.1.S1_at	E	E	AI165855	AI165855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1695.1.A1_at	E	E	CK096924	CK096924	NA	NA	Q8LGU7	Nuclear ribonuclease Z	AT1G74700.1	tRNAse Z1 	LOC_Os02g12290.1	"nuclear ribonuclease Z, putative"	Medtr5g101320.1	"Nuclear ribonuclease Z, putative "	NA	NA	NA
Ptp.1699.1.A1_at	E	E	CK093035	CK093035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1700.1.A1_at	E	E	CK093036	CK093036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1702.1.A1_at	E	E	CK093057	CK093057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1709.1.A1_at	E	E	CK093124	CK093124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1714.1.A1_at	E	E	CK093174	CK093174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1716.1.A1_at	E	E	CK093179	CK093179	NA	NA	Q0DXS3	Probable RNA-dependent RNA polymerase 1	AT1G14790.1	RNA-dependent RNA polymerase 1 	LOC_Os02g50330.1	"RNA-dependent RNA polymerase, putative, expressed"	NA	NA	NA	NA	NA
Ptp.172.1.S1_at	E	E	CV248945	CV248945	NA	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr4g160530.1	Ribosomal protein L31e 	NA	NA	NA
Ptp.1723.1.A1_at	E	E	BU873077	BU873077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1735.2.A1_at	E	E	CK093398	CK093398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1747.1.A1_at	E	E	CK093629	CK093629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.175.1.S1_at	E	E	CK088046	CK088046	NA	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os10g37400.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	NA	NA	NA
Ptp.1756.1.A1_at	E	E	CK093804	CK093804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1761.1.A1_at	E	E	CK091945	CK091945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.177.1.S1_at	E	E	CK087257	CK087257	NA	NA	Q38841	Agamous-like MADS-box protein AGL12	AT1G71692.1	AGAMOUS-like 12 	LOC_Os12g10520.1	"OsMADS33 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g147260.1	"Transcription factor, MADS-box; Transcription factor, K-box "	NA	NA	NA
Ptp.1783.1.A1_at	E	E	CK092363	CK092363	NA	NA	Q9SL29	Putative cyclic nucleotide-gated ion channel 15	AT2G28260.1	cyclic nucleotide-gated channel 15 	LOC_Os02g41710.1	"cyclic nucleotide-gated ion channel, putative, expressed"	AC233683_6.1	Cyclic nucleotide-binding; Ion transport protein AC233683.2 39853-37118 E EGN_Mt090430 200	NA	NA	NA
Ptp.1784.1.A1_at	E	E	CK092361	CK092361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1789.1.A1_at	E	E	CK092493	CK092493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1793.1.S1_at	E	E	CK092588	CK092588	NA	NA	NA	NA	AT1G30600.1	Subtilase family protein 	LOC_Os01g56320.1	"OsSub4 - Putative Subtilisin homologue, expressed"	Medtr4g137790.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA; "	NA	NA	NA
Ptp.1794.2.A1_at	E	E	CK092692	CK092692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1798.1.A1_at	E	E	CK092755	CK092755	NA	NA	Q6ID18	Laccase-10	AT5G01190.1	laccase 10 	LOC_Os01g44330.1	"laccase precursor protein, putative, expressed"	Medtr5g078230.1	Cupredoxin 	NA	NA	NA
Ptp.1799.1.A1_at	E	E	CK092757	CK092757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.181.1.S1_at	E	E	CF228236	CF228236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1812.2.A1_a_at	E	E	CV231664	CV231664	scaffold_8:593656-593980(-) (10)	NA	NA	NA	AT5G33406.1	hAT dimerisation domain-containing protein / transposase-related 	LOC_Os09g32380.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
Ptp.1813.1.A1_at	E	E	CK092976	CK092976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1815.1.S1_at	E	E	CV263204	CV263204	NA	NA	Q94BQ2	26S protease regulatory subunit 8 homolog B	AT5G20000.1	AAA-type ATPase family protein 	LOC_Os02g11050.1	"26S protease regulatory subunit, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	NA	NA
Ptp.1823.1.A1_at	E	E	CV274596	CV274596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.183.1.S1_at	E	E	CF234345	CF234345	NA	NA	Q9NPD3	Exosome complex exonuclease RRP41	AT3G61620.2	3'-5'-exoribonuclease family protein 	LOC_Os09g07820.3	"exosome complex exonuclease, putative, expressed"	Medtr7g143590.1	3 exoribonuclease 	NA	NA	NA
Ptp.1830.1.A1_at	E	E	CK093220	CK093220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1840.1.A1_at	E	E	CK093298	CK093298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1841.1.A1_at	E	E	CK093297	CK093297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1843.1.A1_at	E	E	CV226158	CV226158	NA	NA	NA	NA	AT2G46580.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os03g02450.2	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	NA	NA
Ptp.1843.2.S1_at	E	E	CK093338	CK093338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.185.1.A1_at	E	E	CK087299	CK087299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1852.1.A1_at	E	E	CK093522	CK093522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.186.1.A1_at	E	E	CK087302	CK087302	NA	NA	NA	NA	AT2G40480.1	Plant protein of unknown function (DUF827) 	NA	NA	Medtr5g091420.1	"Protein of unknown function DUF827, plant "	NA	NA	NA
Ptp.1866.1.A1_at	E	E	CK093755	CK093755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1874.1.S1_at	E	E	CK092570	CK092570	NA	NA	NA	NA	AT1G69640.1	sphingoid base hydroxylase 1 	LOC_Os07g43460.1	"sphingolipid C4-hydroxylase SUR2, putative, expressed"	NA	NA	NA	NA	NA
Ptp.1885.1.S1_at	E	E	CK092721	CK092721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1908.1.A1_at	E	E	CK092150	CK092150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1910.1.A1_at	E	E	CK092152	CK092152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1922.1.A1_at	E	E	CK092869	CK092869	NA	NA	A5BUU4	40S ribosomal protein SA	AT1G72370.2	40s ribosomal protein SA 	NA	NA	Medtr3g143830.1	"Ribosomal protein S2, eukaryotic and archaeal form "	NA	NA	NA
Ptp.1923.1.A1_at	E	E	CK092873	CK092873	NA	NA	NA	NA	AT4G22190.1	unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). 	NA	NA	Medtr2g029070.1	hypothetical protein 	NA	NA	NA
Ptp.1926.1.A1_x_at	E	E	CV228327	CV228327	NA	NA	Q38829	Auxin-responsive protein IAA11	AT4G28640.3	indole-3-acetic acid inducible 11 	LOC_Os02g57250.2	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr5g032240.1	AUX/IAA protein 	NA	NA	NA
Ptp.1932.1.A1_at	E	E	CK093169	CK093169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1935.1.A1_at	E	E	CK093198	CK093198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.196.1.S1_at	E	E	CK087365	CK087365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1962.1.S1_at	E	E	CK088052	CK088052	NA	NA	Q9SZA3	Eukaryotic translation initiation factor 3 subunit K	AT4G33250.1	eukaryotic translation initiation factor 3K 	LOC_Os03g08450.1	"eukaryotic translation initiation factor 3 subunit K, putative, expressed"	Medtr8g133200.1	SAC3/GANP; Eukaryotic translation initiation factor 3 subunit 12; Winged helix repressor DNA-binding 	NA	NA	NA
Ptp.1979.1.S1_at	E	E	BU835174	BU835174	NA	NA	NA	NA	AT3G17020.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os05g06500.1	"universal stress protein domain containing protein, putative, expressed"	Medtr2g038300.1	UspA 	NA	NA	NA
Ptp.1990.1.S1_at	E	E	AI161509	AI161509	NA	NA	Q6Z7L8	Rac-like GTP-binding protein 7	AT1G75840.1	RAC-like GTP binding protein 5 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	NA	NA	NA
Ptp.2002.1.S1_s_at	E	E	CK089075	CK089075	scaffold_9:11657209-11657248(+) (11)	NA	Q9FK81	Uncharacterized protein At5g22580	AT5G22580.1	Stress responsive A/B Barrel Domain 	LOC_Os11g05290.1	"stress responsive A/B Barrel domain containing protein, expressed"	NA	NA	NA	NA	NA
Ptp.2009.2.S1_at	E	E	CV227897	CV227897	NA	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os07g47780.2	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	NA	NA	NA
Ptp.201.1.A1_at	E	E	CK087417	CK087417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2013.1.S1_at	E	E	CV252156	CV252156	NA	NA	P46690	Gibberellin-regulated protein 4	AT5G15230.1	GAST1 protein homolog 4 	LOC_Os09g24840.2	"GASR10 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr6g012880.1	Gibberellin regulated protein 	NA	NA	NA
Ptp.2018.2.A1_at	E	E	CV258836	CV258836	NA	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT1G09000.1	NPK1-related protein kinase 1 	LOC_Os09g21510.1	"STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr7g139260.1	Protein kinase 	NA	NA	NA
Ptp.202.1.A1_at	E	E	CK087430	CK087430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2044.2.S1_a_at	E	E	CK104194	CK104194	scaffold_8:1284718-1284895(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.205.2.A1_at	E	E	CK087452	CK087452	NA	NA	P93394	Uracil phosphoribosyltransferase	AT3G53900.2	uracil phosphoribosyltransferase 	LOC_Os05g38170.1	"phosphoribosyl transferase, putative, expressed"	NA	NA	NA	NA	NA
Ptp.2060.1.S1_at	E	E	CK088012	CK088012	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2080.1.S1_at	E	E	CX653977	CX653977	NA	NA	Q32LH4	Nitrilase homolog 1	AT4G08790.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein 	LOC_Os12g31830.1	"nitrilase, putative, expressed"	Medtr1g146400.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	NA	NA	NA
Ptp.2085.3.S1_at	E	E	CK088473	CK088473	NA	NA	P93212	14-3-3 protein 7	AT1G22300.2	general regulatory factor 10 	LOC_Os03g50290.3	"14-3-3 protein, putative, expressed"	Medtr5g046960.1	14-3-3 protein 	NA	NA	NA
Ptp.2088.1.S1_at	E	E	BI126758	BI126758	NA	NA	P50218	Isocitrate dehydrogenase [NADP]	AT1G65930.1	cytosolic NADP+-dependent isocitrate dehydrogenase 	LOC_Os05g49760.1	"dehydrogenase, putative, expressed"	Medtr5g084930.1	"Isocitrate dehydrogenase NADP-dependent, plant "	NA	NA	NA
Ptp.2092.1.S1_at	E	E	BU815077	BU815077	NA	NA	O82204	60S ribosomal protein L28-1	AT2G19730.3	Ribosomal L28e protein family 	LOC_Os01g51020.1	"60S ribosomal protein L28-1, putative, expressed"	Medtr2g121690.1	Ribosomal L28e protein 	NA	NA	NA
Ptp.2121.2.S1_x_at	E	E	CV264526	CV264526	NA	NA	P46286	60S ribosomal protein L8-1	AT2G18020.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr7g084800.1	Elongation factor P-like protein YeiP 	NA	NA	NA
Ptp.213.1.S1_at	E	E	CK099345	CK099345	NA	NA	NA	NA	AT2G01220.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g49670.2	"cytidylyltransferase domain containing protein, expressed"	NA	NA	NA	NA	NA
Ptp.2140.1.A1_at	E	E	CK089425	CK089425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2147.2.S1_at	E	E	CK093224	CK093224	NA	NA	Q851Y7	"Monothiol glutaredoxin-S7, chloroplastic"	AT3G54900.1	CAX interacting protein 1 	LOC_Os03g63420.1	"OsGrx_S14 - glutaredoxin subgroup II, expressed"	Medtr7g089300.1	Glutaredoxin-related protein; Glutaredoxin active site 	NA	NA	NA
Ptp.2149.1.S1_at	E	E	CK089576	CK089576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2161.1.S1_at	E	E	CK089812	CK089812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2187.2.A1_at	E	E	CK089802	CK089802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2192.1.S1_at	E	E	DN487589	DN487589	NA	NA	Q8GUU2	E3 ubiquitin protein ligase RIE1	AT1G68070.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os02g50290.1	"RING zinc finger protein, putative, expressed"	Medtr4g157080.1	"Zinc finger, RING-type "	NA	NA	NA
Ptp.2194.1.S1_at	E	E	CK090000	CK090000	NA	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g14540.1	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein	Medtr8g008720.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
Ptp.2216.1.S1_at	E	E	CK093128	CK093128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2230.1.S1_at	E	E	CV255359	CV255359	scaffold_2:8869404-8869785(-) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT3G03990.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g10620.3	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g023380.1	Alpha/beta hydrolase fold 	NA	NA	NA
Ptp.2237.1.S1_at	E	E	CK089572	CK089572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2239.1.S1_at	E	E	CK095744	CK095744	NA	NA	NA	NA	AT3G24200.2	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g62260.1	"FAD binding domain containing protein, expressed"	Medtr2g071190.2	Aromatic-ring hydroxylase 	NA	NA	NA
Ptp.2245.1.S1_at	E	E	BU815300	BU815300	NA	NA	NA	NA	AT1G52980.1	GTP-binding family protein 	NA	NA	Medtr4g111990.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	NA	NA
Ptp.2264.1.S1_at	E	E	CK089625	CK089625	NA	NA	NA	NA	AT5G23530.1	carboxyesterase 18 	LOC_Os11g13570.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr6g071230.1	"Probable gibberellin receptor GID1L2, related "	NA	NA	NA
Ptp.2279.1.A1_at	E	E	CK088032	CK088032	NA	NA	NA	NA	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	NA	NA	NA
Ptp.2281.1.S1_s_at	E	E	AJ768675	AJ768675	scaffold_11:10971413-10971450(+) (9)	NA	Q8RWE8	GDP-L-galactose phosphorylase 1	AT4G26850.1	mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase 	LOC_Os12g08810.1	"VTC2, putative, expressed"	Medtr5g100780.1	"VTC2-like protein, putative "	NA	NA	NA
Ptp.2307.2.S1_at	E	E	CK093149	CK093149	NA	NA	NA	NA	AT3G06330.2	RING/U-box superfamily protein 	LOC_Os02g06920.2	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr2g025600.1	"Zinc finger, RING-type; RINGv "	NA	NA	NA
Ptp.2310.1.A1_at	E	E	CK088838	CK088838	NA	NA	Q9M9E1	ABC transporter G family member 40	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os08g29570.1	"pleiotropic drug resistance protein 3, putative, expressed"	Medtr7g117170.1	AAA ATPase; 	NA	NA	NA
Ptp.2314.1.S1_s_at	E	E	DN495644	DN495644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2319.1.S1_at	E	E	CK088696	CK088696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2328.1.S1_at	E	E	BU812735	BU812735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2331.1.S1_at	E	E	CF237163	CF237163	NA	NA	P41099	60S acidic ribosomal protein P2	AT2G27710.4	60S acidic ribosomal protein family 	LOC_Os05g37330.1	"60S acidic ribosomal protein, putative, expressed"	NA	NA	NA	NA	NA
Ptp.2340.2.S1_at	E	E	BU885598	BU885598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2342.2.A1_s_at	E	E	CK089633	CK089633	NA	NA	NA	NA	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.4	"smr domain containing protein, expressed"	NA	NA	NA	NA	NA
Ptp.2348.1.S1_at	E	E	CK092577	CK092577	scaffold_16:12099252-12099307(+) (11)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.1	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	NA	NA	NA	NA	NA
Ptp.2366.1.S1_at	E	E	CK092128	CK092128	NA	NA	Q41001	Blue copper protein	AT4G32590.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os05g48160.3	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr1g012990.1	Ferredoxin 	NA	NA	NA
Ptp.2368.1.S1_at	E	E	CV239520	CV239520	NA	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr7g134920.2	"Peptidase A1, pepsin "	NA	NA	NA
Ptp.2372.1.S1_at	E	E	CK087471	CK087471	NA	NA	Q9LF79	"Calcium-transporting ATPase 8, plasma membrane-type"	AT5G57110.2	"autoinhibited Ca2+ -ATPase, isoform 8 "	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	NA	NA	NA
Ptp.2376.1.S1_at	E	E	CK092341	CK092341	NA	NA	NA	NA	AT5G23490.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). 	LOC_Os05g01060.1	expressed protein	Medtr7g035260.1	hypothetical protein 	NA	NA	NA
Ptp.2382.1.S1_at	E	E	CK087693	CK087693	NA	NA	Q8LB60	Cyclin-U3-1	AT3G63120.1	cyclin p1;1 	LOC_Os05g33040.3	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	NA	NA	NA
Ptp.2416.1.A1_at	E	E	CV226264	CV226264	NA	NA	P33629	Tubulin alpha chain	AT4G14960.2	Tubulin/FtsZ family protein 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	NA	NA	NA
Ptp.2417.1.S1_at	E	E	CK093208	CK093208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2418.1.S1_at	E	E	DN488194	DN488194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.244.1.A1_at	E	E	CK087664	CK087664	scaffold_11:16995412-16995928(-) (9)	NA	NA	NA	AT3G12955.1	SAUR-like auxin-responsive protein family  	LOC_Os08g35110.1	"OsSAUR33 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g133100.1	"auxin-responsive protein-related, putative "	NA	NA	NA
Ptp.2446.1.S1_at	E	E	BU886389	BU886389	NA	NA	NA	NA	AT4G05150.1	Octicosapeptide/Phox/Bem1p family protein 	NA	NA	Medtr4g124660.1	Octicosapeptide/Phox/Bem1p 	NA	NA	NA
Ptp.2447.1.S1_at	E	E	CK093683	CK093683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.245.1.A1_at	E	E	CK087665	CK087665	scaffold_1:37305869-37305952(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2458.1.S1_s_at	E	E	CK103778	CK103778	NA	NA	P24805	Stem-specific protein TSJT1	AT5G43830.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233674_1.1	"Stem-specific protein TSJT1, related AC233674.1 2329-1 E EGN_Mt090430 200"	NA	NA	NA
Ptp.2458.1.S1_x_at	E	E	CK103778	CK103778	NA	NA	P24805	Stem-specific protein TSJT1	AT5G43830.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g53270.1	"stem-specific protein TSJT1, putative, expressed"	AC233674_1.1	"Stem-specific protein TSJT1, related AC233674.1 2329-1 E EGN_Mt090430 200"	NA	NA	NA
Ptp.2459.1.S1_at	E	E	CK102232	CK102232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2463.2.S1_at	E	E	DN484793	DN484793	NA	NA	P02877	Pro-hevein	AT3G04720.1	pathogenesis-related 4 	LOC_Os11g37950.1	"WIP3 - Wound-induced protein precursor, expressed"	Medtr6g027840.1	"Glycoside hydrolase, family 19; Barwin-related endoglucanase "	NA	NA	NA
Ptp.2463.3.S1_at	E	E	CK092991	CK092991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2465.1.S1_at	E	E	CK092035	CK092035	NA	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	NA	NA	NA
Ptp.247.1.A1_s_at	E	E	CK087704	CK087704	scaffold_8:12909778-12909910(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G26370.1	O-fucosyltransferase family protein 	LOC_Os06g47290.1	"growth regulator related protein, putative, expressed"	Medtr3g102440.1	Hypothetical plant protein 	NA	NA	NA
Ptp.2470.1.S1_at	E	E	CV228256	CV228256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2482.1.S1_at	E	E	CF229547	CF229547	NA	NA	Q43052	Phenylalanine ammonia-lyase G2B	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os02g41650.3	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g120610.1	Phenylalanine/histidine ammonia-lyase 	NA	NA	NA
Ptp.2502.1.A1_at	E	E	CV225710	CV225710	NA	NA	NA	NA	AT3G02680.1	nijmegen breakage syndrome 1 	LOC_Os10g34580.2	"FHA domain containing protein, putative, expressed"	Medtr5g084040.1	Forkhead-associated 	NA	NA	NA
Ptp.2504.1.S1_at	E	E	CK093639	CK093639	NA	NA	Q27GI3	Nucleobase-ascorbate transporter 6	AT5G62890.3	Xanthine/uracil permease family protein 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g125300.1	Xanthine/uracil/vitamin C permease 	NA	NA	NA
Ptp.2510.1.S1_at	E	E	CF228021	CF228021	NA	NA	Q9FT45	Fasciclin-like arabinogalactan protein 15	AT3G52370.1	FASCICLIN-like arabinogalactan protein 15 precursor 	LOC_Os03g57460.1	"fasciclin domain containing protein, expressed"	Medtr2g104610.1	Beta-Ig-H3/fasciclin; Myristoyl-CoA:protein N-myristoyltransferase 	NA	NA	NA
Ptp.2527.1.S1_at	E	E	BU811942	BU811942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2528.1.S1_at	E	E	CV244260	CV244260	NA	NA	Q6AUK5	"Peptide methionine sulfoxide reductase B3, chloroplastic"	AT4G04830.1	methionine sulfoxide reductase B5 	LOC_Os05g33510.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr2g026010.1	Mss4-like 	NA	NA	NA
Ptp.2529.1.S1_at	E	E	CK109000	CK109000	NA	NA	Q940G6	Probable gibberellin receptor GID1L3	AT3G48690.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129290.1	Lipolytic enzyme 	NA	NA	NA
Ptp.2560.2.S1_a_at	E	E	BU835696	BU835696	NA	NA	Q4PGW7	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr7g103920.1	Nitrate reductase NADH dependant 	NA	NA	NA
Ptp.2563.1.S1_at	E	E	CX656106	CX656106	NA	NA	P48502	Cytochrome b-c1 complex subunit 7	AT5G25450.1	"Cytochrome bd ubiquinol oxidase, 14kDa subunit "	LOC_Os03g59220.1	"cytochrome b-c1 complex subunit 7, putative, expressed"	Medtr1g013430.1	"Cytochrome bd ubiquinol oxidase, 14 kDa subunit "	NA	NA	NA
Ptp.2593.1.S1_at	E	E	CK093742	CK093742	NA	NA	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.3	Abortive infection protein 	NA	NA	NA
Ptp.2612.1.S1_a_at	E	E	BU874689	BU874689	NA	NA	Q944J0	Probable signal peptidase complex subunit 1	AT2G22425.2	Microsomal signal peptidase 12 kDa subunit (SPC12) 	LOC_Os12g25210.1	"signal peptidase complex subunit 1, putative"	Medtr3g103650.1	"Microsomal signal peptidase 12 kDa subunit; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
Ptp.2615.1.S1_at	E	E	CK092470	CK092470	NA	NA	Q94FB9	ABC transporter D family member 1	AT4G39850.3	peroxisomal ABC transporter 1 	LOC_Os01g73530.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g101500.1	Peroxysomal long chain fatty acyl transporter 	NA	NA	NA
Ptp.2628.1.A2_at	E	E	CK103571	CK103571	NA	NA	P37830	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	NA	NA	NA
Ptp.2628.1.A2_x_at	E	E	CK103571	CK103571	NA	NA	P37830	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	NA	NA	NA
Ptp.2630.1.S1_at	E	E	BP931907	BP931907	NA	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr8g120570.1	"Leucine-rich repeat, cysteine-containing subtype "	NA	NA	NA
Ptp.2650.1.S1_at	E	E	DN495004	DN495004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.267.1.A1_at	E	E	CK087846	CK087846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2678.1.S1_at	E	E	CK091948	CK091948	NA	NA	Q93Y35	Probable 26S proteasome non-ATPase regulatory subunit 6	AT4G24820.2	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os04g40850.1	"26S proteasome non-ATPase regulatory subunit 6, putative, expressed"	Medtr8g109930.1	Proteasome component region PCI 	NA	NA	NA
Ptp.2688.1.S1_at	E	E	BU892076	BU892076	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g006510.1	hypothetical protein 	NA	NA	NA
Ptp.269.1.A1_at	E	E	BU893714	BU893714	NA	NA	A1L272	Equilibrative nucleoside transporter 4	AT1G70330.1	equilibrative nucleotide transporter 1 	LOC_Os08g10450.1	"nucleoside transporter, putative, expressed"	Medtr8g120640.1	Delayed-early response protein/equilibrative nucleoside transporter 	NA	NA	NA
Ptp.2691.2.S1_at	E	E	BU897852	BU897852	NA	NA	A8KYS5	Transaldolase	AT5G13420.1	Aldolase-type TIM barrel family protein 	LOC_Os01g70170.1	"transaldolase, putative, expressed"	Medtr7g006100.1	Transaldolase subfamily; 	NA	NA	NA
Ptp.2695.1.S1_at	E	E	CK093538	CK093538	NA	NA	Q9LN77	F-box protein PP2-A12	AT1G12710.1	phloem protein 2-A12 	LOC_Os03g02550.1	"OsFBX76 - F-box domain containing protein, expressed"	Medtr5g010960.1	Cyclin-like F-box 	NA	NA	NA
Ptp.2712.1.S1_at	E	E	AY162180.1	AY162180.1	NA	NA	O48947	Cellulose synthase A catalytic subunit 2 [UDP-forming]	AT4G39350.1	cellulose synthase A2 	LOC_Os07g14850.1	"CESA6 - cellulose synthase, expressed"	Medtr4g141680.1	"Zinc finger, RING-type; Cellulose synthase "	NA	NA	NA
Ptp.2715.1.S1_at	E	E	AY260746.1	AY260746.1	NA	NA	P57751	UTP--glucose-1-phosphate uridylyltransferase 1	AT5G17310.2	UDP-glucose pyrophosphorylase 2 	LOC_Os09g38030.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	Medtr5g084880.2	UTP--glucose-1-phosphate uridylyltransferase 	NA	NA	NA
Ptp.2721.1.A1_at	E	E	DN503770	DN503770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2722.1.A1_at	E	E	DN492562	DN492562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2727.1.S1_at	E	E	DN492886	DN492886	NA	NA	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os03g18454.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed"	Medtr3g034410.1	"Gamma-interferon-inducible lysosomal thiol reductase precursor, related "	NA	NA	NA
Ptp.2728.1.S1_at	E	E	CV241162	CV241162	NA	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT2G16230.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g095460.1	"Glycoside hydrolase, family 17; X8 "	NA	NA	NA
Ptp.2730.1.S1_at	E	E	BU833186	BU833186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2733.1.S1_at	E	E	DN492339	DN492339	scaffold_1:1437943-1438212(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2757.1.S1_at	E	E	BU832730	BU832730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2758.1.S1_at	E	E	CK087502	CK087502	NA	NA	Q8LEM8	60S ribosomal protein L37-3	AT3G16080.1	Zinc-binding ribosomal protein family protein 	LOC_Os02g56990.1	"ribosomal protein L37, putative, expressed"	Medtr2g122910.1	Ribosomal protein L37e; 	NA	NA	NA
Ptp.276.1.A1_at	E	E	CK087971	CK087971	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2760.1.S1_at	E	E	DN499362	DN499362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2776.1.S1_at	E	E	BU867047	BU867047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2788.1.S1_at	E	E	DN488265	DN488265	scaffold_19:14498180-14498534(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2789.1.S1_at	E	E	DN497921	DN497921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2792.1.S1_at	E	E	DN484996	DN484996	NA	NA	NA	NA	AT2G27170.2	Structural maintenance of chromosomes (SMC) family protein 	LOC_Os02g04040.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	NA	NA	NA	NA	NA
Ptp.2799.1.S1_at	E	E	BU874348	BU874348	scaffold_1:9755144-9757964(+) (11)	NA	Q02370	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	AT5G47890.1	"NADH-ubiquinone oxidoreductase B8 subunit, putative "	LOC_Os04g24520.1	"ribosomal protein L51, putative, expressed"	Medtr2g038400.1	Mitochondrial ribosome 	NA	NA	NA
Ptp.28.1.A1_at	E	E	CK087854	CK087854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2802.1.S1_at	E	E	DN487872	DN487872	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g138020.1	Multi antimicrobial extrusion protein MatE 	NA	NA	NA
Ptp.2810.1.S1_at	E	E	CV269429	CV269429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2812.1.S1_at	E	E	CV262496	CV262496	NA	NA	P93711	Caffeoyl-CoA O-methyltransferase	AT1G67980.1	caffeoyl-CoA 3-O-methyltransferase 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	NA	NA
Ptp.2813.1.S1_at	E	E	BU816193	BU816193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2814.1.S1_at	E	E	DN485966	DN485966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2820.1.S1_at	E	E	AJ773181	AJ773181	scaffold_15:4528928-4529097(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2833.1.S1_at	E	E	BU813749	BU813749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2838.2.A1_at	E	E	DN485482	DN485482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2840.1.S1_at	E	E	DN484943	DN484943	NA	NA	NA	NA	AT2G04340.1	unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g30140.1	expressed protein	Medtr4g114840.1	hypothetical protein 	NA	NA	NA
Ptp.2858.1.S1_at	E	E	DN484717	DN484717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2867.1.A1_at	E	E	DN493066	DN493066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2868.2.A1_at	E	E	DN493053	DN493053	NA	NA	NA	NA	NA	NA	NA	NA	Medtr6g036540.1	"Zinc finger, CCHC-type "	NA	NA	NA
Ptp.2878.1.A1_at	E	E	DN493116	DN493116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2879.1.S1_at	E	E	DN493111	DN493111	NA	NA	O65155	RNA polymerase II transcriptional coactivator KELP	AT4G10920.2	transcriptional coactivator p15 (PC4) family protein (KELP) 	LOC_Os01g50960.1	"RNA polymerase II transcriptional coactivator KELP, putative, expressed"	NA	NA	NA	NA	NA
Ptp.2880.1.A1_at	E	E	DN493022	DN493022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2882.1.S1_at	E	E	DN492693	DN492693	NA	NA	NA	NA	AT3G13650.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	Medtr7g076490.1	Plant disease resistance response protein 	NA	NA	NA
Ptp.2892.1.S1_at	E	E	BU894264	BU894264	NA	NA	Q84YK7	Beta-glucosidase 27	AT5G24550.1	beta glucosidase 32 	LOC_Os08g39860.1	"Os8bglu27 - beta-glucosidase homologue, similar to Os4bglu12 exoglucanase, expressed"	NA	NA	NA	NA	NA
Ptp.2897.1.S1_at	E	E	CK113447	CK113447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2905.1.S1_at	E	E	DN500512	DN500512	scaffold_148:33558-33633(+) (11)//scaffold_19:9243181-9243256(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2905.2.A1_at	E	E	DN490519	DN490519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2907.1.A1_at	E	E	DN490396	DN490396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.291.1.S1_at	E	E	CK088113	CK088113	NA	NA	Q6NLB1	F-box protein At2g26850	AT2G26850.1	F-box family protein 	LOC_Os01g17390.1	"OsFBX5 - F-box domain containing protein, expressed"	Medtr5g096190.1	Cyclin-like F-box 	NA	NA	NA
Ptp.2910.1.S1_at	E	E	DN500525	DN500525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2913.1.A1_at	E	E	DN490435	DN490435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2917.1.A1_at	E	E	DN490307	DN490307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2921.1.A1_at	E	E	DN489953	DN489953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2931.1.S1_a_at	E	E	CK112992	CK112992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2945.1.S1_at	E	E	DN489554	DN489554	NA	NA	Q2PCF1	Pleiotropic drug resistance protein 2	AT2G36380.1	pleiotropic drug resistance 6 	LOC_Os11g37700.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr1g117060.1	AAA ATPase; 	NA	NA	NA
Ptp.295.1.A1_s_at	E	E	CK088137	CK088137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2954.1.S1_s_at	E	E	CK109808	CK109808	NA	NA	Q14FH4	Photosystem II reaction center protein K	ATCG00070.1	photosystem II reaction center protein K precursor 	LOC_Os10g41696.1	"photosystem II reaction center protein K precursor, putative, expressed"	Medtr8g071020.1	Photosystem II protein PsbK 	NA	NA	NA
Ptp.2959.1.S1_at	E	E	DN488766	DN488766	NA	NA	P45482	Cell division protein ftsZ	AT3G52750.1	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	NA	NA	NA
Ptp.296.1.S1_at	E	E	AY573574.1	AY573574.1	NA	NA	Q8LPK5	Cellulose synthase A catalytic subunit 8 [UDP-forming]	AT4G18780.1	cellulose synthase family protein 	LOC_Os01g54620.1	"CESA4 - cellulose synthase, expressed"	Medtr4g134990.1	Cellulose synthase 	NA	NA	NA
Ptp.2960.2.A1_at	E	E	DN488755	DN488755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2974.1.S1_at	E	E	BU885840	BU885840	NA	NA	Q9SR40	Laccase-7	AT3G09220.1	laccase 7 	LOC_Os12g15680.1	"laccase precursor protein, putative, expressed"	Medtr5g020490.1	Copper-resistance protein CopA 	NA	NA	NA
Ptp.2983.1.S1_at	E	E	BU833852	BU833852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2984.1.A1_at	E	E	DN488110	DN488110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2992.1.S1_at	E	E	DN486003	DN486003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2993.1.S1_at	E	E	CX658401	CX658401	NA	NA	P47926	Protein RSI-1	AT3G02885.1	GAST1 protein homolog 5 	LOC_Os05g31280.1	"GASR5 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr5g085950.1	Gibberellin regulated protein 	NA	NA	NA
Ptp.2994.1.S1_at	E	E	DN486131	DN486131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2997.1.S1_at	E	E	DN495548	DN495548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2998.1.A1_at	E	E	DN485952	DN485952	NA	NA	O13419	Actin	AT3G12110.1	actin-11 	LOC_Os05g01600.2	"actin, putative, expressed"	Medtr3g144140.2	Actin/actin-like 	NA	NA	NA
Ptp.3003.1.A1_at	E	E	DN485748	DN485748	NA	NA	Q8NKF9	"Glucan 1,3-beta-glucosidase"	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3004.1.A1_at	E	E	DN485707	DN485707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3005.1.S1_at	E	E	BU814176	BU814176	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3006.1.A1_at	E	E	DN485694	DN485694	NA	NA	O94347	Uncharacterized protein C61.03	AT5G19150.2	pfkB-like carbohydrate kinase family protein 	LOC_Os11g17610.1	expressed protein	NA	NA	NA	NA	NA
Ptp.301.1.A1_at	E	E	CK088181	CK088181	NA	NA	NA	NA	AT5G45530.1	Protein of unknown function (DUF594) 	LOC_Os06g49000.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	NA	NA	NA
Ptp.3013.1.S1_at	E	E	DN485763	DN485763	NA	NA	O60064	Probable mannose-1-phosphate guanyltransferase	AT1G74910.2	ADP-glucose pyrophosphorylase family protein 	LOC_Os03g11050.1	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr6g009470.1	Bacterial transferase hexapeptide repeat 	NA	NA	NA
Ptp.3015.2.S1_at	E	E	DN486675	DN486675	NA	NA	Q9LUW0	"Lipoxygenase 5, chloroplastic"	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr1g132610.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	NA	NA	NA
Ptp.3016.1.S1_at	E	E	DN495208	DN495208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3027.1.A1_s_at	E	E	DN484991	DN484991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3039.2.S1_at	E	E	DN484665	DN484665	NA	NA	Q9SBA5	Inositol-tetrakisphosphate 1-kinase 1	AT5G16760.1	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os10g42550.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	NA	NA	NA
Ptp.3043.1.S1_at	E	E	AF041049.1	AF041049.1	NA	NA	O24145	4-coumarate--CoA ligase 1	AT1G51680.1	4-coumarate:CoA ligase 1 	LOC_Os02g08100.1	"AMP-binding domain containing protein, expressed"	Medtr4g023340.1	AMP-dependent synthetase and ligase 	NA	NA	NA
Ptp.3048.1.S1_at	E	E	CV274194	CV274194	scaffold_1:31151-31341(-) (11)//scaffold_16:9105214-9105400(-) (10)	NA	O23255	Adenosylhomocysteinase 1	AT4G13940.4	S-adenosyl-L-homocysteine hydrolase 	LOC_Os11g26850.3	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr3g104810.1	S-adenosyl-L-homocysteine hydrolase 	NA	NA	NA
Ptp.3051.1.S1_at	E	E	BU896657	BU896657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3055.1.S1_at	E	E	CK110358	CK110358	NA	NA	Q0DJ33	Guanine nucleotide-binding protein alpha-1 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr6g080390.1	"G-protein alpha subunit, group I "	NA	NA	NA
Ptp.3083.1.S1_x_at	E	E	AY607762.1	AY607762.1	NA	NA	Q8LEE9	Fasciclin-like arabinogalactan protein 12	AT5G60490.1	FASCICLIN-like arabinogalactan-protein 12 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	NA	NA	NA
Ptp.3097.2.S1_at	E	E	CV277440	CV277440	NA	NA	O98997	"Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic"	AT2G39730.3	rubisco activase 	NA	NA	Medtr5g087780.1	"AAA ATPase, central region "	NA	NA	NA
Ptp.3119.1.A1_at	E	E	CK091927	CK091927	NA	NA	Q94EJ6	Probable methyltransferase PMT14	AT4G18030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	NA	NA	NA
Ptp.3124.1.S1_at	E	E	DN498905	DN498905	NA	NA	Q2QD30	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr5g010890.1	AAA ATPase; Chloroplast Ycf2 	NA	NA	NA
Ptp.3141.1.S1_at	E	E	DN485938	DN485938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3148.2.S1_at	E	E	CV282821	CV282821	NA	NA	Q8LPQ9	Flowering time control protein FPA	AT4G12640.1	RNA recognition motif (RRM)-containing protein 	LOC_Os09g12730.2	"RNA recognition motif containing protein, expressed"	Medtr3g111320.1	"Nucleotide-binding, alpha-beta plait "	NA	NA	NA
Ptp.3152.1.A1_at	E	E	DN485400	DN485400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3156.1.S1_s_at	E	E	CV269705	CV269705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3156.2.S1_at	E	E	CK110807	CK110807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3157.1.S1_s_at	E	E	BU814919	BU814919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3169.2.S1_a_at	E	E	CK104417	CK104417	NA	NA	Q9LQU4	Uncharacterized protein At1g14870	AT1G14870.1	PLANT CADMIUM RESISTANCE 2 	LOC_Os03g61470.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g157530.1	Uncharacterized Cys-rich domain 	NA	NA	NA
Ptp.3172.1.A1_at	E	E	CV226184	CV226184	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g005840.1	hypothetical protein 	NA	NA	NA
Ptp.3175.1.S1_at	E	E	DN486095	DN486095	NA	NA	Q8R1V4	Transmembrane emp24 domain-containing protein 4	AT1G26690.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os09g27980.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr4g137560.1	emp24/gp25L/p24 	NA	NA	NA
Ptp.3176.1.S1_at	E	E	DN486092	DN486092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3177.1.S1_at	E	E	DN486089	DN486089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.318.1.A1_at	E	E	CK088300	CK088300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3181.1.S1_at	E	E	CK110486	CK110486	NA	NA	O74173	Elongation factor 1-beta	AT1G30230.2	"Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6 "	LOC_Os07g46750.1	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	NA	NA	NA
Ptp.3184.1.S1_at	E	E	CK110399	CK110399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3186.2.S1_at	E	E	BU816205	BU816205	NA	NA	NA	NA	AT5G64460.8	Phosphoglycerate mutase family protein 	LOC_Os04g01230.2	"phosphoglycerate mutase, putative, expressed"	Medtr4g121830.1	"phosphoglycerate mutase-like protein, putative "	NA	NA	NA
Ptp.3191.1.S1_at	E	E	CK110323	CK110323	NA	NA	NA	NA	AT5G42340.1	Plant U-Box 15 	LOC_Os01g12930.1	"U-box domain containing protein, expressed"	Medtr1g112060.1	U box; Armadillo-like helical; 	NA	NA	NA
Ptp.3193.1.S1_at	E	E	CK094944	CK094944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3194.1.A1_at	E	E	DN485939	DN485939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3196.1.A1_at	E	E	DN485923	DN485923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3199.1.S1_at	E	E	DN485785	DN485785	NA	NA	P24487	"ATP synthase subunit alpha, mitochondrial"	ATMG01190.1	ATP synthase subunit 1 	LOC_Os09g08910.1	"ATP synthase, putative, expressed"	Medtr1g006540.1	ATPase FliI/YscN 	NA	NA	NA
Ptp.3208.1.S1_at	E	E	CK109739	CK109739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.322.1.A1_at	E	E	CK088335	CK088335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3229.1.S1_at	E	E	DN495621	DN495621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3231.1.S1_at	E	E	BU816524	BU816524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3237.1.S1_at	E	E	DN495578	DN495578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.324.1.S1_at	E	E	CK088350	CK088350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3246.1.S2_x_at	E	E	CV272845	CV272845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3249.1.S1_at	E	E	BU862624	BU862624	NA	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os03g59250.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	NA	NA	NA
Ptp.3255.1.S1_at	E	E	BU815217	BU815217	NA	NA	Q9UUH1	Vacuolar protein sorting-associated protein 55	NA	NA	NA	NA	Medtr5g014160.1	Vacuolar protein sorting 55 	NA	NA	NA
Ptp.3256.1.S1_at	E	E	BU815216	BU815216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3263.1.S1_at	E	E	DN485798	DN485798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3266.1.S1_at	E	E	DN485786	DN485786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3268.1.S1_at	E	E	DN485773	DN485773	NA	NA	NA	NA	AT2G28130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g13940.1	expressed protein	Medtr4g076360.1	hypothetical protein 	NA	NA	NA
Ptp.3270.1.S1_at	E	E	DN485769	DN485769	NA	NA	P27081	"ADP,ATP carrier protein, mitochondrial (Fragment)"	AT3G08580.2	ADP/ATP carrier 1 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	NA	NA	NA
Ptp.3271.1.S1_at	E	E	DN485760	DN485760	NA	NA	Q4R9N3	Tubulin beta chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	NA	NA	NA
Ptp.3275.1.A1_at	E	E	DN485732	DN485732	NA	NA	NA	NA	AT3G51980.1	ARM repeat superfamily protein 	NA	NA	Medtr3g110290.1	Armadillo-like helical 	NA	NA	NA
Ptp.3276.1.S1_at	E	E	BU813853	BU813853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3279.1.S1_s_at	E	E	CX183809	CX183809	scaffold_163:9947-10356(-) (11)//scaffold_19:14191993-14192402(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3280.1.S1_at	E	E	DN485711	DN485711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3283.1.S1_at	E	E	DN485660	DN485660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3292.1.S1_at	E	E	BU830343	BU830343	NA	NA	Q99PV0	Pre-mRNA-processing-splicing factor 8	AT1G80070.1	Pre-mRNA-processing-splicing factor 	LOC_Os06g07080.1	"pre-mRNA-processing-splicing factor 8, putative, expressed"	Medtr2g126650.1	"Mov34/MPN/PAD-1; PRO8NT; PROCN; PRO, C-terminal "	NA	NA	NA
Ptp.3294.1.S1_at	E	E	DN485530	DN485530	NA	NA	P79013	40S ribosomal protein S11	AT3G48930.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g52361.1	"ribosomal protein S17, putative, expressed"	Medtr8g122510.1	Ribosomal protein S17 	NA	NA	NA
Ptp.3302.1.S1_at	E	E	DN485489	DN485489	NA	NA	O60144	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	NA	NA	NA
Ptp.3304.1.S1_at	E	E	DN485483	DN485483	NA	NA	NA	NA	AT1G73650.3	Protein of unknown function (DUF1295) 	LOC_Os03g50070.1	"DUF1295 domain containing protein, putative, expressed"	Medtr4g155170.1	Protein of unknown function DUF1295 	NA	NA	NA
Ptp.3307.1.S1_at	E	E	BU813160	BU813160	NA	NA	P79013	40S ribosomal protein S11	AT4G30800.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g52361.1	"ribosomal protein S17, putative, expressed"	Medtr8g122510.1	Ribosomal protein S17 	NA	NA	NA
Ptp.3309.1.S1_at	E	E	BU813099	BU813099	NA	NA	P38605	Cycloartenol synthase	AT2G07050.1	cycloartenol synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr5g008860.1	Prenyltransferase/squalene oxidase 	NA	NA	NA
Ptp.3310.1.S1_at	E	E	DN485426	DN485426	NA	NA	O60168	Uncharacterized endonuclease C19F8.04c	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3315.1.S1_at	E	E	DN486126	DN486126	NA	NA	Q9P7B2	40S ribosomal protein S8-B	AT5G20290.1	Ribosomal protein S8e family protein 	LOC_Os04g28180.1	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	NA
Ptp.3316.1.S1_at	E	E	BU816715	BU816715	NA	NA	Q9UUZ9	"Thiazole biosynthetic enzyme, mitochondrial"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	NA	NA	NA
Ptp.3319.1.S1_at	E	E	CV242577	CV242577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3329.1.S1_at	E	E	BU816154	BU816154	NA	NA	P23641	Mitochondrial phosphate carrier protein	AT5G14040.1	phosphate transporter 3;1 	LOC_Os09g28160.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr4g152080.1	Mitochondrial substrate carrier 	NA	NA	NA
Ptp.3330.1.S1_at	E	E	DN495550	DN495550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3334.1.S1_at	E	E	DN495531	DN495531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3346.1.S1_at	E	E	DN485877	DN485877	NA	NA	Q08632	Short-chain type dehydrogenase/reductase	AT4G13180.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g07440.1	"versicolorin reductase, putative, expressed"	AC233662_57.1	Short-chain dehydrogenase/reductase SDR AC233662.1 262132-261094 F EGN_Mt090430 200	NA	NA	NA
Ptp.3350.1.S1_at	E	E	DN485855	DN485855	NA	NA	Q75AP7	60S ribosomal protein L2	AT2G18020.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr5g021750.1	Elongation factor P-like protein YeiP 	NA	NA	NA
Ptp.3355.1.S1_at	E	E	DN485815	DN485815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3360.1.S1_at	E	E	DN485802	DN485802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3376.1.S1_at	E	E	BP932761	BP932761	NA	NA	Q08276	"Heat shock 70 kDa protein, mitochondrial"	AT5G09590.1	mitochondrial HSO70 2 	LOC_Os02g53420.1	"DnaK family protein, putative, expressed"	Medtr4g121730.1	Chaperone DnaK 	NA	NA	NA
Ptp.3379.1.A1_at	E	E	DN485709	DN485709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3385.1.S1_at	E	E	BU813986	BU813986	NA	NA	P10663	"37S ribosomal protein MRP2, mitochondrial"	NA	NA	LOC_Os08g02640.1	"succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed"	NA	NA	NA	NA	NA
Ptp.3397.1.S1_at	E	E	BU813250	BU813250	NA	NA	O74227	Guanine nucleotide-binding protein subunit alpha	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3402.1.S1_at	E	E	DN494913	DN494913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3406.1.S1_at	E	E	DN485404	DN485404	NA	NA	Q09751	Lactoylglutathione lyase	AT1G08110.4	lactoylglutathione lyase family protein / glyoxalase I family protein 	LOC_Os05g22970.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	NA	NA	NA
Ptp.3413.1.S1_at	E	E	DN493298	DN493298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3416.1.S1_s_at	E	E	CV243653	CV243653	NA	NA	P31839	NADH-ubiquinone oxidoreductase chain 1	ATMG01275.1	NADH dehydrogenase 1A 	LOC_Os10g21396.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr7g021590.1	"Respiratory-chain NADH dehydrogenase, subunit 1 "	NA	NA	NA
Ptp.3421.2.S1_at	E	E	CF119199	CF119199	NA	NA	Q9ZPI6	Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1	AT4G29010.1	Enoyl-CoA hydratase/isomerase family 	LOC_Os02g17390.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr6g099470.1	IQ calmodulin-binding region; Enoyl-CoA hydratase/isomerase 	NA	NA	NA
Ptp.3429.1.S1_at	E	E	BU834120	BU834120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3431.1.S1_at	E	E	DN493094	DN493094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3432.1.S1_at	E	E	DN503100	DN503100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3433.1.S1_at	E	E	DN493078	DN493078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3442.1.S1_at	E	E	BU897004	BU897004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3447.1.A1_at	E	E	DN492951	DN492951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.345.1.A1_at	E	E	CK088483	CK088483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3454.1.S1_at	E	E	DN492924	DN492924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3457.1.S1_at	E	E	BU894886	BU894886	scaffold_1:1857761-1857798(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3457.2.A1_at	E	E	DN492884	DN492884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3477.1.S1_at	E	E	DN492770	DN492770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3483.1.S1_at	E	E	DN492727	DN492727	NA	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	NA	NA	NA	NA	NA	NA	NA
Ptp.349.1.S1_at	E	E	CK088507	CK088507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3490.1.S1_at	E	E	BU895768	BU895768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3495.1.S1_at	E	E	DN492646	DN492646	NA	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	NA	NA
Ptp.3501.1.S1_at	E	E	CV280237	CV280237	scaffold_13:13452480-13453294(-) (11)	NA	Q3KQ45	Brain protein 16	AT1G14300.1	ARM repeat superfamily protein 	LOC_Os10g26660.1	expressed protein	AC146568_4.1	Armadillo-like helical AC146568.11 28240-21578 F EGN_Mt090430 200	NA	NA	NA
Ptp.3501.1.S1_s_at	E	E	CV280237	CV280237	NA	NA	Q3KQ45	Brain protein 16	AT1G14300.1	ARM repeat superfamily protein 	LOC_Os10g26660.1	expressed protein	AC146568_4.1	Armadillo-like helical AC146568.11 28240-21578 F EGN_Mt090430 200	NA	NA	NA
Ptp.3514.1.S1_at	E	E	DN492824	DN492824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3519.1.S1_at	E	E	DN502439	DN502439	scaffold_2:2832605-2832778(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3542.1.S1_at	E	E	BU898143	BU898143	scaffold_9:2554844-2555196(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3545.1.S1_at	E	E	CF235856	CF235856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3547.1.S1_at	E	E	DN503278	DN503278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3548.1.A1_at	E	E	DN493234	DN493234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3550.1.S1_at	E	E	DN493217	DN493217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3552.1.S1_at	E	E	BU897853	BU897853	NA	NA	O81645	Villin-3	AT3G57410.1	villin 3 	LOC_Os03g24220.3	"villin protein, putative, expressed"	Medtr2g041680.1	Villin headpiece; Gelsolin region 	NA	NA	NA
Ptp.3554.1.S1_s_at	E	E	CV277406	CV277406	scaffold_1:29530909-29531670(-) (10)	NA	Q93ZR6	O-acyltransferase WSD1	AT5G53390.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os01g48874.1	"wax synthase, putative, expressed"	AC151525_17.1	Protein of unknown function DUF1298 AC151525.18 75832-72871 F EGN_Mt090430 200	NA	NA	NA
Ptp.3572.1.S1_at	E	E	DN493031	DN493031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3575.1.S1_at	E	E	BU811318	BU811318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3579.1.S1_at	E	E	DN492963	DN492963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3580.1.S1_s_at	E	E	DN492558	DN492558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3583.1.S1_at	E	E	DN492937	DN492937	NA	NA	Q9LS42	Protein CASP	AT3G18480.1	CCAAT-displacement protein alternatively spliced product 	LOC_Os03g50300.1	"CASP, putative, expressed"	Medtr4g158400.1	"CASP, C-terminal "	NA	NA	NA
Ptp.3589.1.S1_at	E	E	CF232104	CF232104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3593.1.S1_at	E	E	BU837448	BU837448	NA	NA	Q9C8W3	"Alpha-(1,4)-fucosyltransferase"	AT1G71990.1	fucosyltransferase 13 	LOC_Os12g07290.1	"alpha-1,4-fucosyltransferase, putative, expressed"	Medtr4g129820.1	"Glycosyl transferase, family 10 "	NA	NA	NA
Ptp.3596.1.S1_at	E	E	DN492861	DN492861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3601.1.S1_at	E	E	CK103970	CK103970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3613.1.S1_at	E	E	DN492717	DN492717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3626.1.S1_at	E	E	BP933336	BP933336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3631.1.S1_at	E	E	BU895422	BU895422	NA	NA	Q8LDI5	Thioredoxin-like protein CXXS1	AT1G11530.1	C-terminal cysteine residue is changed to a serine 1 	LOC_Os04g53740.1	"thioredoxin, putative, expressed"	Medtr2g096730.1	Thioredoxin-like fold; 	NA	NA	NA
Ptp.3649.1.A1_at	E	E	DN492435	DN492435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.365.2.S1_at	E	E	CV230700	CV230700	NA	NA	Q00451	36.4 kDa proline-rich protein	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	NA	NA	NA
Ptp.3650.1.S1_at	E	E	BU894768	BU894768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.367.1.A1_at	E	E	CK088647	CK088647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3677.1.S1_s_at	E	E	CV255022	CV255022	NA	NA	A4GYV8	"30S ribosomal protein S7, chloroplastic"	ATCG00900.1	Ribosomal protein S7p/S5e family protein 	LOC_Os04g16798.1	"chloroplast 30S ribosomal protein S7, putative, expressed"	Medtr3g043700.1	Ribosomal protein S7 	NA	NA	NA
Ptp.3677.2.S1_a_at	E	E	CA820849	CA820849	NA	NA	A4GYN8	"30S ribosomal protein S12-B, chloroplastic"	ATCG00905.1	ribosomal protein S12C 	LOC_Os10g21374.1	"chloroplast 30S ribosomal protein S12, putative"	Medtr3g043690.1	"Ribosomal protein S12, bacterial and chloroplast form "	NA	NA	NA
Ptp.3682.1.A1_at	E	E	DN491528	DN491528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3702.1.A1_at	E	E	CK112970	CK112970	scaffold_10:6620092-6620628(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3707.1.S1_at	E	E	BU884541	BU884541	NA	NA	NA	NA	AT5G19390.2	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os03g24180.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g096580.1	RhoGAP; Pleckstrin homology-type 	NA	NA	NA
Ptp.3730.2.A1_at	E	E	DN488401	DN488401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.375.1.A1_at	E	E	CK088699	CK088699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3750.1.A1_at	E	E	CV281580	CV281580	scaffold_10:20722612-20722930(-) (10)	NA	P46301	40S ribosomal protein S25	AT4G39200.2	Ribosomal protein S25 family protein 	LOC_Os08g44480.1	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	NA	NA	NA
Ptp.3751.1.S1_at	E	E	DN488359	DN488359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3754.1.A1_at	E	E	DN497958	DN497958	NA	NA	P16061	Endochitinase WIN8	AT3G12500.1	basic chitinase 	LOC_Os05g33140.1	"CHIT5 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	NA	NA	NA
Ptp.3757.1.A1_at	E	E	BU896413	BU896413	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g099900.1	"Zinc finger, RING-type "	NA	NA	NA
Ptp.376.1.A1_at	E	E	CK088700	CK088700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3763.1.A1_at	E	E	DN488246	DN488246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.377.1.A1_at	E	E	CK088704	CK088704	NA	NA	NA	NA	AT4G39690.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane protein Mitofilin (InterPro:IPR019133); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
Ptp.3774.1.S1_at	E	E	DN489300	DN489300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3774.1.S1_s_at	E	E	DN489300	DN489300	scaffold_1:10335410-10336019(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3776.1.S1_x_at	E	E	CV276886	CV276886	NA	NA	Q43129	Non-specific lipid-transfer protein	AT2G38540.1	lipid transfer protein 1 	LOC_Os12g02330.2	"LTPL13 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	NA	NA	NA
Ptp.3776.2.S1_at	E	E	CV235243	CV235243	NA	NA	Q43129	Non-specific lipid-transfer protein	AT2G38540.1	lipid transfer protein 1 	LOC_Os12g02330.2	"LTPL13 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	NA	NA	NA
Ptp.3797.1.S1_at	E	E	BU815742	BU815742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3800.1.S1_at	E	E	BU884274	BU884274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3807.1.S1_at	E	E	DN487785	DN487785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3816.1.S1_s_at	E	E	BU863984	BU863984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3825.1.S1_at	E	E	DN497995	DN497995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3841.1.S1_at	E	E	BU885232	BU885232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3847.1.S1_at	E	E	DN497609	DN497609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.385.1.A1_at	E	E	CK088729	CK088729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3850.1.S1_at	E	E	BU884767	BU884767	NA	NA	Q9SSK7	MLP-like protein 34	AT1G70850.3	MLP-like protein 34 	NA	NA	Medtr8g012990.1	Bet v I allergen 	NA	NA	NA
Ptp.3852.1.S1_at	E	E	BU884637	BU884637	NA	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37990.1	elicitor-activated gene 3-2 	LOC_Os08g16910.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	NA	NA	NA
Ptp.3860.1.S1_at	E	E	BU833700	BU833700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3861.1.S1_s_at	E	E	BU884413	BU884413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3868.3.S1_s_at	E	E	BU897031	BU897031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3871.1.S1_at	E	E	CA926586	CA926586	NA	NA	NA	NA	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr8g119830.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	NA	NA	NA
Ptp.3873.2.S1_a_at	E	E	DN499265	DN499265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3884.1.S1_at	E	E	CK112542	CK112542	NA	NA	O49453	Uncharacterized protein At4g28440	AT1G23750.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	NA	NA	NA
Ptp.3885.2.S1_at	E	E	BU866323	BU866323	NA	NA	P13939	Late embryogenesis abundant protein D-7	AT3G15670.1	Late embryogenesis abundant protein (LEA) family protein 	NA	NA	NA	NA	NA	NA	NA
Ptp.3895.1.S1_at	E	E	BU862927	BU862927	NA	NA	P15479	Isocitrate lyase	AT3G21720.1	isocitrate lyase 	LOC_Os07g34520.2	"isocitrate lyase, putative, expressed"	NA	NA	NA	NA	NA
Ptp.39.2.A1_at	E	E	CK087961	CK087961	NA	NA	NA	NA	AT5G16060.1	Cytochrome c oxidase biogenesis protein Cmc1-like 	LOC_Os03g15240.1	hypothetical protein	NA	NA	NA	NA	NA
Ptp.391.1.A1_at	E	E	CK088768	CK088768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3912.2.S1_s_at	E	E	DN494000	DN494000	NA	NA	NA	NA	AT4G22920.1	non-yellowing 1 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.2	"senescence-inducible chloroplast stay-green protein, putative "	NA	NA	NA
Ptp.394.1.A1_at	E	E	CK088784	CK088784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3945.1.S1_at	E	E	CF235619	CF235619	NA	NA	NA	NA	AT2G16760.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g19452.1	"SMP-30/Gluconolaconase/LRE domain protein, putative, expressed"	Medtr1g106660.1	"TolB, C-terminal "	NA	NA	NA
Ptp.3960.1.S1_at	E	E	BU813318	BU813318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3994.1.S1_at	E	E	DN488919	DN488919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.402.1.A1_at	E	E	CK088860	CK088860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4022.1.S1_at	E	E	BU862814	BU862814	NA	NA	Q8S528	"Aldehyde dehydrogenase family 2 member B7, mitochondrial"	AT1G23800.1	aldehyde dehydrogenase 2B7 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	NA	NA	NA
Ptp.4041.1.S1_at	E	E	DN488501	DN488501	NA	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.1	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.1	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr2g006710.1	"Dihydrolipoamide acetyltransferase, long form "	NA	NA	NA
Ptp.4044.1.S1_at	E	E	DN494458	DN494458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4045.2.S1_at	E	E	CN193425	CN193425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4046.2.S1_at	E	E	CK107007	CK107007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4048.1.S1_at	E	E	CF232419	CF232419	NA	NA	O49884	60S ribosomal protein L30	AT1G77940.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g59730.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	NA	NA	NA
Ptp.4050.15.A1_x_at	E	E	CV278546	CV278546	NA	NA	Q96386	Metallothionein-like protein type 3	AT3G15353.1	metallothionein 3 	NA	NA	NA	NA	NA	NA	NA
Ptp.4057.1.S1_at	E	E	DN488100	DN488100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4065.1.S1_at	E	E	DN484895	DN484895	NA	NA	P41115	40S ribosomal protein S11	AT3G48930.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os07g37770.1	"ribosomal protein S17, putative, expressed"	Medtr8g122510.1	Ribosomal protein S17 	NA	NA	NA
Ptp.4072.1.S1_at	E	E	DN495658	DN495658	NA	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g166250.1	"Lipolytic enzyme, G-D-S-L; "	NA	NA	NA
Ptp.4081.1.S1_at	E	E	DN484689	DN484689	NA	NA	P45594	Cofilin/actin-depolymerizing factor homolog	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os03g60590.2	"actin-depolymerizing factor, putative, expressed"	Medtr4g149600.1	"Actin-binding, cofilin/tropomyosin type "	NA	NA	NA
Ptp.4108.1.S1_at	E	E	BU836983	BU836983	scaffold_18:922531-922669(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4137.1.S1_at	E	E	DN499551	DN499551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4141.1.S1_at	E	E	BU834892	BU834892	NA	NA	P23687	Prolyl endopeptidase	AT1G76140.1	Prolyl oligopeptidase family protein 	LOC_Os04g47360.1	"OsPOP9 - Putative Prolyl Oligopeptidase homologue, expressed"	NA	NA	NA	NA	NA
Ptp.4147.1.S1_s_at	E	E	CV260818	CV260818	NA	NA	Q9M9W1	60S ribosomal protein L22-2	AT3G05560.3	Ribosomal L22e protein family 	LOC_Os07g47710.1	"60S ribosomal protein L22-2, putative, expressed"	Medtr1g108350.1	Ribosomal L22e protein 	NA	NA	NA
Ptp.4155.1.S1_at	E	E	DN499392	DN499392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4162.1.S1_at	E	E	BI136592	BI136592	scaffold_10:13947674-13948310(-) (11)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT1G68690.1	Protein kinase superfamily protein 	LOC_Os05g01040.3	"serine/threonine-protein kinase, putative, expressed"	Medtr5g035520.1	Protein kinase 	NA	NA	NA
Ptp.418.1.A1_at	E	E	CK089000	CK089000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4181.1.S1_at	E	E	DN489205	DN489205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4193.3.A1_at	E	E	CK090066	CK090066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.420.1.A1_at	E	E	CK089038	CK089038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4202.1.S1_at	E	E	DN490424	DN490424	NA	NA	Q84WM7	Pectinesterase PPME1	AT1G69940.1	Pectin lyase-like superfamily protein 	LOC_Os05g44600.1	"pectinesterase, putative, expressed"	Medtr4g160050.1	Pectinesterase 	NA	NA	NA
Ptp.4204.1.S1_at	E	E	BU827018	BU827018	NA	NA	Q55141	Acetolactate synthase small subunit	AT2G31810.1	ACT domain-containing small subunit of acetolactate synthase protein 	LOC_Os02g39570.6	"ACT domain containing protein, expressed"	Medtr4g137170.1	"Acetolactate synthase, small subunit "	NA	NA	NA
Ptp.4206.2.A1_at	E	E	DN490410	DN490410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4211.1.S1_at	E	E	BU826521	BU826521	NA	NA	P25141	Alcohol dehydrogenase 1	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	NA	NA	NA
Ptp.422.1.A1_at	E	E	CK089053	CK089053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4223.1.S1_at	E	E	DN500207	DN500207	NA	NA	NA	NA	AT2G33590.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g41810.1	"reductase, putative, expressed"	CU179634_4.1	NAD-dependent epimerase/dehydratase CU179634.6 12713-9139 H EGN_Mt090430 200	NA	NA	NA
Ptp.4236.1.S1_at	E	E	DN490000	DN490000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4242.1.S1_at	E	E	BU837221	BU837221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4249.1.S1_at	E	E	DN499826	DN499826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4254.1.S1_at	E	E	BU836595	BU836595	NA	NA	NA	NA	AT1G26940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	NA	NA	NA	NA	NA	NA	NA
Ptp.4259.1.S1_at	E	E	BU836166	BU836166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4269.2.A1_at	E	E	CV259270	CV259270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4270.1.S1_at	E	E	DN499659	DN499659	NA	NA	Q9C8M9	Protein STRUBBELIG-RECEPTOR FAMILY 6	AT1G53730.1	STRUBBELIG-receptor family 6 	LOC_Os03g08550.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g163300.1	Tyrosine protein kinase 	NA	NA	NA
Ptp.4276.1.S1_at	E	E	BU835252	BU835252	scaffold_6:23935112-23935288(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4281.1.S1_at	E	E	DN499534	DN499534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4282.3.S1_at	E	E	CV241113	CV241113	NA	NA	Q9SAK5	Myb family transcription factor APL	AT3G24120.2	Homeodomain-like superfamily protein 	LOC_Os02g07770.1	"Myb transcription factor, putative"	Medtr2g033400.2	"Myb, DNA-binding; Homeodomain-related "	NA	NA	NA
Ptp.4289.1.S1_at	E	E	DN499434	DN499434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4292.1.S1_at	E	E	BU834082	BU834082	NA	NA	Q9AST6	Vacuolar protein sorting-associated protein 55 homolog	AT3G11530.2	Vacuolar protein sorting 55 (VPS55) family protein 	LOC_Os01g73570.2	"vacuolar protein sorting 55 family protein, putative, expressed"	Medtr5g014160.1	Vacuolar protein sorting 55 	NA	NA	NA
Ptp.4295.3.S1_at	E	E	CK106578	CK106578	NA	NA	Q0DWH1	Alcohol dehydrogenase class-3	AT5G43940.2	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.2	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	NA	NA	NA
Ptp.4297.1.S1_at	E	E	DN499149	DN499149	NA	NA	NA	NA	AT1G68790.1	little nuclei3 	LOC_Os02g48010.1	"nuclear matrix constituent protein 1-like, putative, expressed"	NA	NA	NA	NA	NA
Ptp.4298.1.S1_at	E	E	DN499322	DN499322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4304.1.S1_at	E	E	DN499266	DN499266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4323.1.S1_at	E	E	DN499125	DN499125	scaffold_14:3484727-3484970(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4324.1.S1_at	E	E	DN486139	DN486139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4327.1.S1_at	E	E	DN484263	DN484263	NA	NA	A7PZL3	Probable polygalacturonase	AT1G19170.1	Pectin lyase-like superfamily protein 	LOC_Os09g26800.1	"polygalacturonase, putative, expressed"	Medtr8g132740.1	"Glycoside hydrolase, family 28 "	NA	NA	NA
Ptp.4339.1.S1_at	E	E	DN489330	DN489330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4340.1.S1_at	E	E	CX167767	CX167767	NA	NA	P46302	40S ribosomal protein S28	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	NA	NA	NA
Ptp.4353.1.S1_at	E	E	CV250935	CV250935	NA	NA	Q680P8	40S ribosomal protein S29	AT4G33865.1	Ribosomal protein S14p/S29e family protein 	LOC_Os11g41610.1	"40S ribosomal protein S29, putative"	Medtr5g005230.1	Ribosomal protein S14 	NA	NA	NA
Ptp.4353.1.S1_x_at	E	E	CV250935	CV250935	NA	NA	Q680P8	40S ribosomal protein S29	AT4G33865.1	Ribosomal protein S14p/S29e family protein 	LOC_Os11g41610.1	"40S ribosomal protein S29, putative"	Medtr5g005230.1	Ribosomal protein S14 	NA	NA	NA
Ptp.4356.1.S1_at	E	E	CV243203	CV243203	scaffold_6:6290659-6290962(-) (11)	NA	O80931	Transcription factor AS1	AT2G37630.1	myb-like HTH transcriptional regulator family protein 	LOC_Os12g38400.2	"MYB family transcription factor, putative, expressed"	Medtr7g068530.1	Homeodomain-related; 	NA	NA	NA
Ptp.4360.1.S1_s_at	E	E	BU831376	BU831376	NA	NA	Q948T6	Lactoylglutathione lyase	AT1G11840.6	glyoxalase I homolog 	LOC_Os08g09250.2	"glyoxalase family protein, putative, expressed"	Medtr8g146950.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	NA	NA	NA
Ptp.4374.1.S1_at	E	E	DN499738	DN499738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4383.2.A1_at	E	E	CV266993	CV266993	NA	NA	Q96499	60S ribosomal protein L44	AT4G14320.1	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	NA	NA	NA
Ptp.4427.1.S1_at	E	E	DN498887	DN498887	NA	NA	O64894	"Acyl-coenzyme A oxidase, peroxisomal"	AT5G65110.1	acyl-CoA oxidase 2 	LOC_Os11g39220.2	"acyl-coenzyme A oxidase, putative, expressed"	Medtr4g140300.1	"Acyl-CoA oxidase, C-terminal "	NA	NA	NA
Ptp.445.1.A1_at	E	E	CK089157	CK089157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4450.1.S1_at	E	E	BU829726	BU829726	NA	NA	P25782	Digestive cysteine proteinase 2	AT5G43060.1	Granulin repeat cysteine protease family protein 	LOC_Os04g55650.2	"oryzain alpha chain precursor, putative, expressed"	AC233675_15.1	"Peptidase, cysteine peptidase active site; AC233675.1 77288-76013 E EGN_Mt090430 200"	NA	NA	NA
Ptp.4462.1.S1_s_at	E	E	BU864062	BU864062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4469.1.S1_at	E	E	CK088026	CK088026	scaffold_19:364347-364763(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr6g070990.1	hypothetical protein 	NA	NA	NA
Ptp.4474.3.S1_at	E	E	CV261234	CV261234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4482.1.S1_at	E	E	CV269513	CV269513	scaffold_12:8817739-8817955(+) (11)	NA	NA	NA	AT5G62575.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g21470.1	expressed protein	NA	NA	NA	NA	NA
Ptp.4484.1.S1_at	E	E	BU828599	BU828599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4486.2.S1_at	E	E	CV240457	CV240457	NA	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	NA	NA	NA
Ptp.4496.1.S1_at	E	E	CB239354	CB239354	NA	NA	Q5QM99	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	NA	NA	NA
Ptp.4496.1.S1_x_at	E	E	CB239354	CB239354	NA	NA	Q5QM99	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	NA	NA	NA
Ptp.4526.1.A1_x_at	E	E	AY603358.1	AY603358.1	NA	NA	NA	NA	AT1G66240.1	homolog of anti-oxidant 1 	LOC_Os08g10480.1	heavy metal-associated domain containing protein	Medtr1g117110.1	Heavy metal transport/detoxification protein 	NA	NA	NA
Ptp.4526.3.A1_at	E	E	CV278191	CV278191	NA	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	NA	NA
Ptp.4526.4.A1_x_at	E	E	CV282760	CV282760	NA	NA	NA	NA	AT1G66240.1	homolog of anti-oxidant 1 	LOC_Os08g10480.1	heavy metal-associated domain containing protein	Medtr1g117110.1	Heavy metal transport/detoxification protein 	NA	NA	NA
Ptp.4527.2.A1_at	E	E	DN490438	DN490438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4552.1.S1_at	E	E	DN500352	DN500352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4556.1.S1_at	E	E	CV250148	CV250148	NA	NA	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
Ptp.456.1.S1_s_at	E	E	CV237722	CV237722	scaffold_15:14308904-14309187(-) (11)//scaffold_15:14309310-14309593(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4575.1.S1_at	E	E	BI125740	BI125740	NA	NA	Q9SS90	E3 ubiquitin-protein ligase RGLG1	AT5G63970.2	Copine (Calcium-dependent phospholipid-binding protein) family 	LOC_Os01g73000.2	"copine, putative, expressed"	Medtr3g143100.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	NA	NA	NA
Ptp.4601.1.S1_at	E	E	CV256279	CV256279	scaffold_6:5622717-5625567(-) (11)	NA	NA	NA	AT2G31490.1	unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g53140.1	expressed protein	NA	NA	NA	NA	NA
Ptp.4620.2.S1_at	E	E	CK093502	CK093502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4629.2.A1_at	E	E	DN488224	DN488224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4643.2.A1_at	E	E	CK093322	CK093322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4650.1.S1_at	E	E	CF230125	CF230125	NA	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	NA	NA	NA
Ptp.4659.1.S1_at	E	E	CK096982	CK096982	NA	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT5G59010.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os04g58750.4	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	NA	NA	NA
Ptp.466.1.S1_at	E	E	CK089252	CK089252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.468.2.A1_at	E	E	CK089294	CK089294	NA	NA	Q8VYN2	Vesicle-associated protein 4-2	AT4G21450.3	PapD-like superfamily protein 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	NA	NA
Ptp.469.1.A1_at	E	E	CK089303	CK089303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4720.1.S1_at	E	E	CV275959	CV275959	NA	NA	NA	NA	AT2G22125.1	binding 	LOC_Os06g11990.1	expressed protein	Medtr4g140500.1	C2 	NA	NA	NA
Ptp.4798.1.S1_at	E	E	BI128295	BI128295	NA	NA	P48724	Eukaryotic translation initiation factor 5	NA	NA	NA	NA	Medtr7g094130.1	Translation initiation factor IF5; eIF4-gamma/eIF5/eIF2-epsilon 	NA	NA	NA
Ptp.4801.2.A1_at	E	E	BU830253	BU830253	NA	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g087540.2	"contains regions of similarity to Haemophilus influenzae permease ; coded for by A. thaliana cDNA H76622, related "	NA	NA	NA
Ptp.4818.1.S1_at	E	E	BU812657	BU812657	scaffold_8:6653433-6653893(-) (10)	NA	NA	NA	AT5G66560.1	Phototropic-responsive NPH3 family protein 	NA	NA	AC157372_1.1	BTB/POZ; NPH3 AC157372.2 9592-12375 E EGN_Mt090430 200	NA	NA	NA
Ptp.4820.1.S1_at	E	E	BP933342	BP933342	NA	NA	Q2G7A9	Phosphomethylpyrimidine synthase	AT2G29630.3	thiaminC 	LOC_Os03g47610.8	"thiamine biosynthesis protein thiC, putative, expressed"	NA	NA	NA	NA	NA
Ptp.4820.1.S1_x_at	E	E	BP933342	BP933342	NA	NA	Q2G7A9	Phosphomethylpyrimidine synthase	AT2G29630.3	thiaminC 	LOC_Os03g47610.8	"thiamine biosynthesis protein thiC, putative, expressed"	NA	NA	NA	NA	NA
Ptp.4826.1.S1_at	E	E	BU812358	BU812358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.483.1.A1_at	E	E	CK087347	CK087347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4873.1.S1_at	E	E	BU872440	BU872440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4880.1.S1_at	E	E	CK089952	CK089952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4890.1.S1_at	E	E	DN500560	DN500560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4905.2.S1_at	E	E	AI161496	AI161496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4916.3.A1_at	E	E	CK092406	CK092406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4931.1.A1_at	E	E	BU812153	BU812153	NA	NA	NA	NA	AT3G17800.2	Protein of unknown function (DUF760) 	LOC_Os03g50870.1	expressed protein	Medtr4g154570.1	Protein of unknown function DUF760 	NA	NA	NA
Ptp.4935.1.S1_s_at	E	E	DN500833	DN500833	scaffold_12:359322-359612(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4941.1.A1_at	E	E	DN492316	DN492316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4948.1.S1_at	E	E	DN500795	DN500795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4949.1.S1_at	E	E	CV245114	CV245114	NA	NA	O22932	CBL-interacting serine/threonine-protein kinase 11	AT2G30360.1	SOS3-interacting protein 4 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g082950.1	Protein kinase; NAF 	NA	NA	NA
Ptp.497.1.S1_at	E	E	CK087555	CK087555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.497.1.S1_s_at	E	E	CK087555	CK087555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4982.1.S1_at	E	E	BU817620	BU817620	NA	NA	O23141	Arginine decarboxylase 2	AT4G34710.2	arginine decarboxylase 2 	LOC_Os06g04070.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr4g097390.1	Arginine decarboxylase 	NA	NA	NA
Ptp.501.1.A1_at	E	E	CK087671	CK087671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.502.1.S1_at	E	E	CK087672	CK087672	NA	NA	Q9SAF0	Oxysterol-binding protein-related protein 1D	AT1G13170.2	OSBP(oxysterol binding protein)-related protein 1D 	LOC_Os12g18770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g102710.1	Oxysterol-binding protein; Pleckstrin homology-type 	NA	NA	NA
Ptp.5032.1.S1_at	E	E	CK095338	CK095338	NA	NA	Q39236	Transcription initiation factor IIA subunit 2	AT4G24440.2	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 	LOC_Os01g73890.1	"transcription initiation factor IIA gamma chain, putative, expressed"	Medtr7g005310.1	"Transcription initiation factor IIA, gamma subunit; "	NA	NA	NA
Ptp.5033.1.S1_at	E	E	BI125781	BI125781	NA	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os01g62080.2	"serine/threonine-protein kinase AFC1, putative, expressed"	Medtr3g115270.1	Protein kinase 	NA	NA	NA
Ptp.5048.3.S1_at	E	E	BU816895	BU816895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.505.1.A1_at	E	E	CK087842	CK087842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5055.1.S1_at	E	E	CK094989	CK094989	NA	NA	Q20507	Acyl-CoA-binding protein homolog 3	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5060.1.S1_at	E	E	DN493020	DN493020	scaffold_2:7445506-7445998(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5088.1.S1_at	E	E	DN487870	DN487870	NA	NA	NA	NA	AT4G12720.4	MutT/nudix family protein 	NA	NA	Medtr4g141000.2	NUDIX hydrolase 	NA	NA	NA
Ptp.511.1.A1_at	E	E	CK088014	CK088014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5125.1.S1_at	E	E	DN484905	DN484905	NA	NA	P52578	Isoflavone reductase homolog	AT4G39230.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	NA	NA	NA
Ptp.5126.1.S1_at	E	E	CK105108	CK105108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5127.1.S1_s_at	E	E	BU825199	BU825199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5135.2.S1_at	E	E	CV231344	CV231344	NA	NA	NA	NA	AT1G60470.1	galactinol synthase 4 	NA	NA	NA	NA	NA	NA	NA
Ptp.5152.1.A1_s_at	E	E	CV262007	CV262007	scaffold_7:1050264-1050615(+) (11)	NA	Q96288	Salt tolerance protein	AT1G06040.1	B-box zinc finger family protein 	NA	NA	Medtr2g118390.1	"Zinc finger, B-box "	NA	NA	NA
Ptp.5154.2.A1_at	E	E	CV274253	CV274253	NA	NA	NA	NA	AT5G27120.1	NOP56-like pre RNA processing ribonucleoprotein 	LOC_Os03g22740.1	"nucleolar protein NOP5-1, putative"	Medtr4g096360.2	"Probable nucleolar protein NOP5-1, putative "	NA	NA	NA
Ptp.5168.3.S1_at	E	E	BU896642	BU896642	NA	NA	NA	NA	AT1G67360.1	Rubber elongation factor protein (REF) 	NA	NA	Medtr3g103780.1	Rubber elongation factor 	NA	NA	NA
Ptp.5183.1.S1_at	E	E	BU832279	BU832279	NA	NA	Q07356	"Phytoene dehydrogenase, chloroplastic/chromoplastic"	AT4G14210.1	phytoene desaturase 3 	LOC_Os03g08570.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g104320.1	Amine oxidase 	NA	NA	NA
Ptp.5186.1.S1_at	E	E	BI072819	BI072819	NA	NA	P24792	L-ascorbate oxidase	AT5G21105.3	Plant L-ascorbate oxidase 	LOC_Os06g37080.1	"L-ascorbate oxidase precursor, putative, expressed"	AC235679_7.1	Cupredoxin AC235679.1 17434-22822 E EGN_Mt090430 200	NA	NA	NA
Ptp.5213.1.A1_at	E	E	CK089854	CK089854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5219.1.A1_at	E	E	CK089524	CK089524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5223.1.S1_at	E	E	CV225504	CV225504	NA	NA	Q9LR64	"Thylakoid lumenal protein At1g03610, chloroplastic"	AT1G03600.1	photosystem II family protein 	LOC_Os03g21560.1	"photosystem II 11 kD protein, putative, expressed"	NA	NA	NA	NA	NA
Ptp.5231.1.S1_at	E	E	CK089681	CK089681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5233.1.S1_at	E	E	CK089657	CK089657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5236.1.S1_at	E	E	CK112235	CK112235	NA	NA	A4GYP7	"30S ribosomal protein S2, chloroplastic"	ATCG00160.1	ribosomal protein S2 	LOC_Os10g38278.1	"chloroplast 30S ribosomal protein S2, putative"	Medtr4g042310.1	"Ribosomal protein S2, bacterial and organelle form "	NA	NA	NA
Ptp.5237.2.A1_at	E	E	CK090370	CK090370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5242.3.S1_at	E	E	DN496073	DN496073	NA	NA	P27524	"Chlorophyll a-b binding protein CP24 10A, chloroplastic"	AT1G15820.1	light harvesting complex photosystem II subunit 6 	LOC_Os04g38410.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g008680.1	Chlorophyll A-B binding protein 	NA	NA	NA
Ptp.5256.2.S1_at	E	E	DN493311	DN493311	NA	NA	Q8H0U8	DEAD-box ATP-dependent RNA helicase 42	AT1G20920.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g06344.3	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr2g007080.1	"Helicase, C-terminal; ; "	NA	NA	NA
Ptp.5267.1.S1_at	E	E	AI165334	AI165334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5267.1.S1_s_at	E	E	AI165334	AI165334	scaffold_11:17645037-17645251(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5276.1.S1_at	E	E	CV268936	CV268936	NA	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
Ptp.532.1.S1_at	E	E	CK088410	CK088410	NA	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g41970.1	"methyltransferase, putative, expressed"	Medtr5g043790.1	"Protein of unknown function DUF248, methyltransferase putative "	NA	NA	NA
Ptp.5330.1.S1_at	E	E	CX180441	CX180441	scaffold_5:8312495-8313071(-) (9)	NA	O04977	"Ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic"	AT5G66190.1	ferredoxin-NADP(+)-oxidoreductase 1 	LOC_Os06g01850.1	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr5g022240.1	Oxidoreductase FAD/NAD(P)-binding 	NA	NA	NA
Ptp.5335.1.S1_at	E	E	CK099235	CK099235	NA	NA	Q4WVF4	Pre-mRNA-splicing factor syf1	AT5G28740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g44970.1	"XPA-binding protein 2, putative, expressed"	Medtr2g014060.1	"RNA-processing protein, HAT helix "	NA	NA	NA
Ptp.534.1.S1_at	E	E	CK088420	CK088420	NA	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G17790.1	SNARE associated Golgi protein family 	LOC_Os02g46660.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	NA	NA	NA
Ptp.5345.2.S1_at	E	E	CF119487	CF119487	NA	NA	P85200	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	NA	NA
Ptp.5360.1.S1_at	E	E	CV240019	CV240019	NA	NA	Q39644	Late embryogenesis abundant protein Lea5	AT4G15910.1	drought-induced 21 	NA	NA	Medtr8g138590.1	Late embryogenesis abundant protein 3 	NA	NA	NA
Ptp.5364.1.S1_at	E	E	CK100365	CK100365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5365.2.S1_at	E	E	BI071174	BI071174	NA	NA	P16096	"Fructose-bisphosphate aldolase, chloroplastic"	NA	NA	NA	NA	Medtr4g097260.3	"Fructose-bisphosphate aldolase, class-I "	NA	NA	NA
Ptp.5369.3.S1_at	E	E	CN524653	CN524653	NA	NA	P93047	High mobility group B protein 3	AT1G20696.2	high mobility group B3 	LOC_Os06g51220.4	"HMG1/2, putative, expressed"	Medtr5g024160.1	HMG1/2 (high mobility group) box 	NA	NA	NA
Ptp.5377.1.S1_at	E	E	BU832261	BU832261	NA	NA	P62313	U6 snRNA-associated Sm-like protein LSm6	AT2G43810.2	Small nuclear ribonucleoprotein family protein 	LOC_Os02g30624.2	"LSM domain containing protein, expressed"	Medtr4g110140.1	"Like-Sm ribonucleoprotein-related, core "	NA	NA	NA
Ptp.5393.1.S1_at	E	E	BU837915	BU837915	NA	NA	Q9SZN1	V-type proton ATPase subunit B2	AT4G38510.5	"ATPase, V1 complex, subunit B protein "	LOC_Os06g37180.1	"ATP synthase, putative, expressed"	Medtr7g092560.1	ATPase FliI/YscN 	NA	NA	NA
Ptp.5432.1.S1_at	E	E	CK088763	CK088763	NA	NA	Q5Z6B1	Probable tRNA-splicing endonuclease subunit Sen2	AT5G60230.2	splicing endonuclease 2 	LOC_Os11g38930.1	"tRNA-splicing endonuclease subunit Sen2, putative, expressed"	Medtr7g111160.1	"tRNA intron endonuclease, catalytic C-terminal "	NA	NA	NA
Ptp.5433.1.S1_at	E	E	CK088339	CK088339	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g017150.1	hypothetical protein 	NA	NA	NA
Ptp.544.1.A1_at	E	E	CK088526	CK088526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5452.1.S1_a_at	E	E	CV268062	CV268062	NA	NA	NA	NA	AT5G49540.1	Rab5-interacting family protein 	LOC_Os01g49026.1	"transmembrane protein 93, putative, expressed"	Medtr2g037740.1	Protein of unknown function DUF786 	NA	NA	NA
Ptp.5452.3.A1_at	E	E	CK088841	CK088841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5455.2.S1_at	E	E	CV232178	CV232178	scaffold_1:20338538-20338746(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.546.1.A1_at	E	E	CK088525	CK088525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5470.1.S1_at	E	E	BI071382	BI071382	NA	NA	O49354	"Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial"	AT2G30920.1	coenzyme Q 3 	LOC_Os06g05900.1	"methyltransferase, putative, expressed"	Medtr5g099200.1	Ubiquinone biosynthesis O-methyltransferase 	NA	NA	NA
Ptp.5485.1.S1_at	E	E	CK087871	CK087871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5486.1.S1_at	E	E	AI162760	AI162760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5502.1.S1_at	E	E	BU832753	BU832753	NA	NA	Q8L7T3	Ubiquitin-conjugating enzyme E2 20	AT1G50490.1	ubiquitin-conjugating enzyme 20 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g103970.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
Ptp.5525.1.S1_at	E	E	CV269406	CV269406	NA	NA	Q9SGZ5	Probable beta-D-xylosidase 7	AT1G78060.1	Glycosyl hydrolase family protein 	LOC_Os11g19210.1	"beta-D-xylosidase, putative, expressed"	CU651566_9.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal CU651566.9 51724-46198 E EGN_Mt090430 200"	NA	NA	NA
Ptp.5535.2.S1_at	E	E	CV280062	CV280062	NA	NA	P49636	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	NA	NA	NA
Ptp.5551.1.S1_at	E	E	AI161594	AI161594	NA	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	NA	NA
Ptp.5553.1.S1_at	E	E	AI161571	AI161571	NA	NA	NA	NA	AT3G13460.3	evolutionarily conserved C-terminal region 2 	LOC_Os03g06240.2	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	NA	NA	NA
Ptp.5567.1.S1_at	E	E	CK098494	CK098494	NA	NA	O80501	Ras-related protein RABH1B	AT2G44610.1	Ras-related small GTP-binding family protein 	LOC_Os07g31370.1	"ras-related protein, putative, expressed"	Medtr5g014080.1	"Ras small GTPase, Rab type; "	NA	NA	NA
Ptp.559.1.S1_at	E	E	CV227910	CV227910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.561.1.A1_at	E	E	CK088724	CK088724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5618.1.S1_at	E	E	BU897298	BU897298	NA	NA	O24312	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os05g25640.1	"cytochrome P450, putative, expressed"	Medtr5g083280.1	Cytochrome P450 	NA	NA	NA
Ptp.5620.1.S1_at	E	E	AI161484	AI161484	NA	NA	Q9M0R2	Patellin-5	AT4G09160.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	NA	NA	NA
Ptp.5626.1.S1_at	E	E	AI161894	AI161894	NA	NA	Q940B0	60S ribosomal protein L18-3	AT5G27850.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os07g47780.2	"60S ribosomal protein L18-3, putative, expressed"	Medtr1g099960.1	Ribosomal protein L18e 	NA	NA	NA
Ptp.5628.3.S1_at	E	E	CK095375	CK095375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5660.1.S1_at	E	E	AI162249	AI162249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5662.1.S1_at	E	E	CA823147	CA823147	NA	NA	Q6R3K6	Probable metal-nicotianamine transporter YSL6	AT3G27020.1	YELLOW STRIPE like 6 	LOC_Os04g32050.1	"transposon protein, putative, unclassified, expressed"	Medtr7g018260.1	Oligopeptide transporter OPT superfamily 	NA	NA	NA
Ptp.5665.1.S1_at	E	E	AI162186	AI162186	NA	NA	NA	NA	AT5G01470.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g61140.2	expressed protein	Medtr4g008870.1	hypothetical protein 	NA	NA	NA
Ptp.5706.1.S1_at	E	E	CK098040	CK098040	NA	NA	Q9SYG7	Aldehyde dehydrogenase family 7 member B4	AT1G54100.2	aldehyde dehydrogenase 7B4 	LOC_Os09g26880.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g049500.1	Aldehyde dehydrogenase 	NA	NA	NA
Ptp.5712.1.S1_at	E	E	CK113355	CK113355	NA	NA	O04161	Ammonium transporter 1 member 2	AT1G64780.1	ammonium transporter 1;2 	LOC_Os04g43070.1	"ammonium transporter protein, putative, expressed"	Medtr1g093290.1	Rh-like protein/ammonium transporter 	NA	NA	NA
Ptp.573.1.A1_at	E	E	CK088945	CK088945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5733.1.S1_at	E	E	AJ777863	AJ777863	NA	NA	Q01915	"ATP synthase subunit alpha, mitochondrial"	AT2G07698.1	"ATPase, F1 complex, alpha subunit protein "	LOC_Os09g08910.1	"ATP synthase, putative, expressed"	Medtr1g006540.1	ATPase FliI/YscN 	NA	NA	NA
Ptp.5733.1.S1_s_at	E	E	AJ777863	AJ777863	NA	NA	Q01915	"ATP synthase subunit alpha, mitochondrial"	AT2G07698.1	"ATPase, F1 complex, alpha subunit protein "	LOC_Os09g08910.1	"ATP synthase, putative, expressed"	Medtr1g006540.1	ATPase FliI/YscN 	NA	NA	NA
Ptp.5734.1.S1_at	E	E	CV262302	CV262302	NA	NA	Q9C7F5	Nuclear transport factor 2	AT1G27970.1	nuclear transport factor 2B 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	NA	NA	NA
Ptp.5734.2.S1_at	E	E	AI164096	AI164096	NA	NA	Q9C7F5	Nuclear transport factor 2	AT1G27970.2	nuclear transport factor 2B 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	NA	NA	NA
Ptp.5745.1.S1_at	E	E	CV253571	CV253571	scaffold_5:1643048-1643572(-) (11)	NA	Q9MA63	REF/SRPP-like protein At3g05500	AT3G05500.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr2g015120.1	Rubber elongation factor 	NA	NA	NA
Ptp.5746.1.S1_at	E	E	CK098657	CK098657	NA	NA	NA	NA	AT3G14250.1	RING/U-box superfamily protein 	LOC_Os08g35060.1	"protein binding protein, putative, expressed"	Medtr8g026380.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	NA	NA
Ptp.5750.1.A1_at	E	E	CV273299	CV273299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5761.1.S1_at	E	E	AI161593	AI161593	NA	NA	P25141	Alcohol dehydrogenase 1	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	NA	NA	NA
Ptp.5768.1.S1_at	E	E	CV260602	CV260602	NA	NA	Q8VZB9	60S ribosomal protein L10a-1	AT1G08360.1	Ribosomal protein L1p/L10e family 	LOC_Os01g64090.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	NA	NA	NA
Ptp.5788.2.S1_at	E	E	BU834689	BU834689	NA	NA	P93047	High mobility group B protein 3	AT1G20696.2	high mobility group B3 	LOC_Os06g51220.4	"HMG1/2, putative, expressed"	Medtr5g024160.1	HMG1/2 (high mobility group) box 	NA	NA	NA
Ptp.5796.1.S1_at	E	E	CK087882	CK087882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5805.2.S1_at	E	E	AI161701	AI161701	NA	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
Ptp.5886.1.A1_at	E	E	CA824863	CA824863	scaffold_6:19326263-19326788(+) (9)	NA	P51425	60S ribosomal protein L39	AT4G31985.1	Ribosomal protein L39 family protein 	LOC_Os02g55370.1	"60S ribosomal protein L39, putative, expressed"	Medtr3g137960.1	Ribosomal protein L39e 	NA	NA	NA
Ptp.59.1.S1_at	E	E	CA932099	CA932099	NA	NA	Q16G71	Mediator of RNA polymerase II transcription subunit 10	AT1G26665.1	"Mediator complex, subunit Med10 "	LOC_Os09g35920.2	"mediator of RNA polymerase II transcription subunit 10, putative, expressed"	Medtr4g133900.2	"Mediator of RNA polymerase II transcription subunit 10, related "	NA	NA	NA
Ptp.5901.1.S1_at	E	E	BU826487	BU826487	NA	NA	Q9M5X8	Non-specific lipid-transfer protein	AT5G59310.1	lipid transfer protein 4 	LOC_Os11g02369.1	"LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	NA	NA	NA
Ptp.592.1.A1_at	E	E	CK089141	CK089141	NA	NA	Q9FH28	Chaperone protein dnaJ 49	AT5G49060.1	"Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) "	LOC_Os05g30130.1	"chaperone protein dnaJ 49, putative, expressed"	NA	NA	NA	NA	NA
Ptp.5924.1.S1_at	E	E	AI161576	AI161576	NA	NA	Q39011	Shaggy-related protein kinase eta	AT4G18710.1	Protein kinase superfamily protein 	LOC_Os02g14130.1	"CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g097890.1	Protein kinase; 	NA	NA	NA
Ptp.593.1.A1_at	E	E	CK089162	CK089162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5936.1.S1_at	E	E	DN488478	DN488478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.594.1.S1_at	E	E	CK089164	CK089164	NA	NA	Q54JM5	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os04g51910.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	NA	NA	NA
Ptp.5940.1.S1_at	E	E	BU830416	BU830416	NA	NA	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.2	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	NA	NA
Ptp.5961.2.S1_at	E	E	CV227075	CV227075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.598.2.A1_at	E	E	CK089178	CK089178	NA	NA	NA	NA	AT5G41940.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os08g43380.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	NA	NA	NA
Ptp.5999.1.S1_at	E	E	BU886555	BU886555	NA	NA	P54873	Hydroxymethylglutaryl-CoA synthase	AT4G11820.2	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase 	LOC_Os08g43170.1	"hydroxymethylglutaryl-CoA synthase, putative, expressed"	Medtr5g011170.1	"Hydroxymethylglutaryl-coenzyme A synthase, active site; "	NA	NA	NA
Ptp.6001.1.S1_at	E	E	BU812899	BU812899	NA	NA	P43390	Metallothionein-like protein type 2	AT3G09390.1	metallothionein 2A 	NA	NA	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	NA	NA
Ptp.601.1.A1_at	E	E	CK089269	CK089269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6015.1.S1_at	E	E	DN493322	DN493322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6018.1.S1_at	E	E	CK104410	CK104410	NA	NA	P79013	40S ribosomal protein S11	AT3G48930.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g52361.1	"ribosomal protein S17, putative, expressed"	Medtr8g122510.1	Ribosomal protein S17 	NA	NA	NA
Ptp.6020.1.S1_at	E	E	CK093853	CK093853	NA	NA	P0C2H6	60S ribosomal protein L27-A	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os02g18380.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	NA	NA	NA
Ptp.6034.1.S1_at	E	E	CK092687	CK092687	NA	NA	Q53HY2	Ninja-family protein mc410	AT4G28910.3	novel interactor of JAZ 	LOC_Os05g48500.3	expressed protein	Medtr6g098770.1	Protein of unknown function DUF1675 	NA	NA	NA
Ptp.6042.1.S1_at	E	E	BU866056	BU866056	NA	NA	NA	NA	AT1G12990.1	"beta-1,4-N-acetylglucosaminyltransferase family protein "	LOC_Os02g38140.2	"glycosyl transferase family 17 protein, putative, expressed"	Medtr3g143490.1	"Glycosyl transferase, family 17 "	NA	NA	NA
Ptp.6059.1.S1_at	E	E	CK094924	CK094924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6066.1.S1_at	E	E	BI126453	BI126453	NA	NA	Q9SYG7	Aldehyde dehydrogenase family 7 member B4	AT1G54100.2	aldehyde dehydrogenase 7B4 	LOC_Os09g26880.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g049500.1	Aldehyde dehydrogenase 	NA	NA	NA
Ptp.6070.1.S1_at	E	E	CK112039	CK112039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6071.1.S1_at	E	E	CK094817	CK094817	NA	NA	P29602	Cucumber peeling cupredoxin	AT2G31050.1	Cupredoxin superfamily protein 	LOC_Os08g37670.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	NA	NA
Ptp.6077.1.S1_at	E	E	BI122891	BI122891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6084.1.S1_at	E	E	CF227515	CF227515	NA	NA	P25804	Cysteine proteinase 15A	AT2G21430.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	NA	NA	NA
Ptp.6085.1.S1_at	E	E	CK095042	CK095042	NA	NA	NA	NA	AT5G26940.4	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os03g18940.1	"exonuclease, putative, expressed"	Medtr7g138210.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
Ptp.613.1.S1_at	E	E	AI162769	AI162769	NA	NA	Q39131	Lamin-like protein	AT5G15350.1	early nodulin-like protein 17 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g021700.1	Blue (type 1) copper domain 	NA	NA	NA
Ptp.6133.1.S1_s_at	E	E	DN500562	DN500562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6135.1.S1_s_at	E	E	BU897962	BU897962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6149.1.S1_at	E	E	BU823862	BU823862	NA	NA	NA	NA	AT5G16360.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	NA	NA	NA
Ptp.6159.3.S1_at	E	E	DN490726	DN490726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6166.1.S1_at	E	E	BU810883	BU810883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6173.1.S1_at	E	E	BU809957	BU809957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6175.1.S1_a_at	E	E	CV249693	CV249693	scaffold_1:35851300-35853590(-) (11)	NA	NA	NA	AT5G55290.2	"ATPase, V0 complex, subunit E "	NA	NA	Medtr3g076670.2	ATP synthase subunit H 	NA	NA	NA
Ptp.6182.1.A1_at	E	E	DN500856	DN500856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6192.1.S1_at	E	E	DN500438	DN500438	NA	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	NA	NA
Ptp.6198.1.S1_s_at	E	E	DN500506	DN500506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6199.1.S1_at	E	E	DN495158	DN495158	NA	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	NA	NA	NA
Ptp.6207.1.S1_at	E	E	DN500615	DN500615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.621.2.S1_a_at	E	E	CV240743	CV240743	scaffold_12:3115402-3115792(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6212.1.S1_at	E	E	CX174523	CX174523	NA	NA	Q9CAQ2	Uncharacterized protein At1g77540	AT1G77540.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os04g35200.1	expressed protein	Medtr3g100520.1	"Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From, putative "	NA	NA	NA
Ptp.6214.1.S1_at	E	E	CV243740	CV243740	NA	NA	NA	NA	AT1G67660.3	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os04g40900.1	"exonuclease, putative"	Medtr2g103530.1	; 	NA	NA	NA
Ptp.6216.1.S1_at	E	E	CV233352	CV233352	scaffold_9:9456947-9457368(+) (11)	NA	Q9XIA7	Mitochondrial import receptor subunit TOM6 homolog	AT1G49410.1	translocase of the outer mitochondrial membrane 6 	NA	NA	NA	NA	NA	NA	NA
Ptp.6217.1.S1_at	E	E	DN500468	DN500468	scaffold_14:974790-975034(-) (11)	NA	NA	NA	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	NA	NA	NA
Ptp.6220.2.A1_s_at	E	E	CV263023	CV263023	NA	NA	NA	NA	AT1G78020.1	Protein of unknown function (DUF581) 	LOC_Os09g20240.1	"DUF581 domain containing protein, expressed"	CU651566_1.1	Protein of unknown function DUF581 CU651566.9 6700-5475 F EGN_Mt090430 200	NA	NA	NA
Ptp.6222.1.S1_at	E	E	BU809586	BU809586	NA	NA	NA	NA	AT5G24318.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g114760.1	"Glycoside hydrolase, family 17; X8 "	NA	NA	NA
Ptp.6227.1.S1_at	E	E	DN500532	DN500532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6229.3.S1_at	E	E	CK099430	CK099430	NA	NA	Q9SV31	Probable aquaporin PIP2-5	AT3G54820.1	plasma membrane intrinsic protein 2;5 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr1g120820.1	Major intrinsic protein 	NA	NA	NA
Ptp.6238.1.S1_at	E	E	DN500648	DN500648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.624.1.S1_at	E	E	CK088287	CK088287	NA	NA	Q42563	Adenine phosphoribosyltransferase 2	AT5G11160.1	adenine phosphoribosyltransferase 5 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr3g137510.1	Phosphoribosyltransferase 	NA	NA	NA
Ptp.6240.1.S1_at	E	E	CV283782	CV283782	NA	NA	P52032	"Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic"	AT2G25080.1	glutathione peroxidase 1 	LOC_Os06g08670.1	"glutathione peroxidase, putative, expressed"	Medtr1g017000.1	Glutathione peroxidase 	NA	NA	NA
Ptp.6242.1.S1_at	E	E	DN500670	DN500670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6249.1.S1_at	E	E	DN492617	DN492617	NA	NA	NA	NA	AT4G10730.1	Protein kinase superfamily protein 	LOC_Os10g37480.2	"STE_PAK_Ste20_STLK.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	NA	NA	NA	NA	NA
Ptp.6250.1.S1_at	E	E	BU811006	BU811006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6265.1.S1_at	E	E	BU898230	BU898230	NA	NA	P12036	Neurofilament heavy polypeptide	AT1G20450.2	Dehydrin family protein 	LOC_Os02g44870.1	"dehydrin, putative, expressed"	Medtr3g162880.1	Dehydrin 	NA	NA	NA
Ptp.6267.1.S1_at	E	E	DN490821	DN490821	NA	NA	Q95K04	E3 ubiquitin-protein ligase RNF133	AT3G58720.2	RING/U-box superfamily protein 	LOC_Os09g17610.1	"RING finger protein, putative, expressed"	Medtr4g110540.1	"Zinc finger, RING-type; RINGv "	NA	NA	NA
Ptp.6282.1.S1_s_at	E	E	CN523758	CN523758	scaffold_7:1049673-1049741(+) (11)	NA	Q96288	Salt tolerance protein	AT1G06040.1	B-box zinc finger family protein 	LOC_Os02g39360.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g118390.1	"Zinc finger, B-box "	NA	NA	NA
Ptp.6286.1.S1_at	E	E	CK101947	CK101947	NA	NA	Q5PP37	Histone-lysine N-methyltransferase ATXR2	AT3G21820.1	histone-lysine N-methyltransferase ATXR2 	LOC_Os04g53700.1	"zinc finger protein, putative, expressed"	Medtr2g103680.1	"Histone-lysine N-methyltransferase ATXR2, putative "	NA	NA	NA
Ptp.6302.1.A1_at	E	E	CV242506	CV242506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6302.1.A1_s_at	E	E	CV242506	CV242506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6305.1.S1_at	E	E	DN493604	DN493604	NA	NA	NA	NA	AT5G47730.3	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os06g40510.1	CRAL/TRIO domain containing protein	Medtr2g032790.2	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	NA	NA	NA
Ptp.6331.2.S1_at	E	E	BU836314	BU836314	NA	NA	Q8GW19	CAAX prenyl protease 2	AT2G36305.1	farnesylated protein-converting enzyme 2 	LOC_Os05g28950.1	"CAAX amino terminal protease family protein, putative, expressed"	NA	NA	NA	NA	NA
Ptp.6333.2.S1_at	E	E	CK093044	CK093044	NA	NA	NA	NA	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	Medtr8g089790.1	Transferase 	NA	NA	NA
Ptp.6344.1.S1_at	E	E	BU824671	BU824671	NA	NA	NA	NA	AT5G63460.1	SAP domain-containing protein 	LOC_Os12g25640.1	"SAP domain containing protein, expressed"	Medtr8g109290.1	DNA-binding SAP 	NA	NA	NA
Ptp.6349.1.S1_at	E	E	CV270564	CV270564	NA	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.2	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	NA	NA	NA
Ptp.6360.2.S1_at	E	E	AI163206	AI163206	NA	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr5g104160.1	Ribosomal protein L24/L26 	NA	NA	NA
Ptp.6363.2.S1_at	E	E	CK103195	CK103195	NA	NA	NA	NA	AT4G08810.1	calcium ion binding 	LOC_Os07g43990.1	expressed protein	Medtr4g134130.1	"Proteinase inhibitor I4, serpin "	NA	NA	NA
Ptp.6373.1.S1_at	E	E	CA927460	CA927460	NA	NA	Q0WRB2	Probable protein phosphatase 2C 73	AT5G27930.2	Protein phosphatase 2C family protein 	LOC_Os05g29030.2	"protein phosphatase 2C, putative, expressed"	Medtr1g100200.1	Protein phosphatase 2C-like; 	NA	NA	NA
Ptp.6385.1.S1_at	E	E	AY607767.1	AY607767.1	NA	NA	Q8LEE9	Fasciclin-like arabinogalactan protein 12	AT5G60490.1	FASCICLIN-like arabinogalactan-protein 12 	LOC_Os05g48890.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	NA	NA	NA
Ptp.6387.1.S1_at	E	E	CV233058	CV233058	NA	NA	NA	NA	AT5G17190.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g50210.1	"erwinia induced protein 2, putative, expressed"	Medtr4g157430.1	"Erwinia induced protein 2, putative "	NA	NA	NA
Ptp.6403.1.S1_at	E	E	CK108345	CK108345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6415.1.S1_at	E	E	CV271067	CV271067	NA	NA	Q6Z1D5	Autophagy-related protein 8C	AT1G62040.2	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr2g104190.1	Light chain 3 (LC3) 	NA	NA	NA
Ptp.6447.1.S1_at	E	E	BU834125	BU834125	NA	NA	Q295Y7	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os08g13930.2	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	NA	NA	NA
Ptp.646.1.S1_a_at	E	E	CV272447	CV272447	scaffold_1:45229467-45229731(-) (11)	NA	O22925	Vacuolar-sorting receptor 2	AT2G30290.2	VACUOLAR SORTING RECEPTOR 2 	LOC_Os07g48229.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr8g005600.1	"EGF-like calcium-binding; Protease-associated PA; Growth factor, receptor "	NA	NA	NA
Ptp.6460.1.S1_at	E	E	CK093473	CK093473	NA	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	NA	NA	NA
Ptp.6493.1.S1_at	E	E	CK091970	CK091970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6497.1.S1_at	E	E	BI130046	BI130046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6498.2.S1_at	E	E	AI162148	AI162148	NA	NA	NA	NA	AT1G02180.1	ferredoxin-related 	LOC_Os08g35710.1	expressed protein	Medtr3g139260.1	hypothetical protein 	NA	NA	NA
Ptp.6504.2.S1_at	E	E	BU887013	BU887013	NA	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
Ptp.6512.1.S1_s_at	E	E	CK112728	CK112728	NA	NA	Q14FC0	"50S ribosomal protein L16, chloroplastic"	ATCG00790.1	ribosomal protein L16 	LOC_Os10g21344.1	"chloroplast 50S ribosomal protein L16, putative"	Medtr4g042460.1	Ribosomal protein L16 	NA	NA	NA
Ptp.654.1.S1_at	E	E	CX174493	CX174493	scaffold_7:14297402-14300391(+) (11)	NA	NA	NA	AT4G37830.1	cytochrome c oxidase-related 	LOC_Os03g56190.1	"cytochrome c oxidase-related, putative, expressed"	Medtr8g102230.1	"Cytochrome c oxidase, subunit VIa "	NA	NA	NA
Ptp.6555.2.A1_at	E	E	CK093518	CK093518	NA	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	NA	NA	NA
Ptp.6563.2.S1_at	E	E	CF235021	CF235021	NA	NA	P17784	Fructose-bisphosphate aldolase cytoplasmic isozyme	AT2G36460.2	Aldolase superfamily protein 	LOC_Os10g08022.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g077730.1	"Fructose-bisphosphate aldolase, class-I "	NA	NA	NA
Ptp.6582.1.S1_x_at	E	E	BU861361	BU861361	scaffold_1:25447219-25447312(+) (11)	NA	P46488	"Malate dehydrogenase, glyoxysomal"	AT5G09660.2	peroxisomal NAD-malate dehydrogenase 2 	LOC_Os12g43630.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr4g121950.1	Lactate/malate dehydrogenase 	NA	NA	NA
Ptp.6594.1.S1_at	E	E	DN488261	DN488261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6601.1.S1_at	E	E	DN490290	DN490290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6609.1.S1_at	E	E	BU884738	BU884738	NA	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	NA	NA
Ptp.6610.1.S1_at	E	E	CK115218	CK115218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6616.2.S1_at	E	E	CV242059	CV242059	scaffold_13:4218146-4218281(+) (9)//scaffold_19:763362-763497(-) (9)	NA	Q9LK61	"30S ribosomal protein S10, chloroplastic"	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	NA	NA	NA
Ptp.6626.1.S1_at	E	E	DN500338	DN500338	NA	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g095460.1	"Glycoside hydrolase, family 17; X8 "	NA	NA	NA
Ptp.6647.1.S1_at	E	E	DN494163	DN494163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6661.1.S1_at	E	E	CK087814	CK087814	NA	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT3G18050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g37156.1	expressed protein	Medtr4g155370.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, related "	NA	NA	NA
Ptp.6677.1.S1_at	E	E	BU813290	BU813290	NA	NA	Q9LZX1	Protein LURP-one-related 15	AT5G01750.2	Protein of unknown function (DUF567) 	LOC_Os07g12730.1	"DUF567 domain containing protein, putative, expressed"	Medtr7g077620.1	Protein of unknown function DUF567 	NA	NA	NA
Ptp.6677.2.S1_at	E	E	BU816164	BU816164	NA	NA	Q9LZX1	Protein LURP-one-related 15	AT5G01750.2	Protein of unknown function (DUF567) 	LOC_Os07g12730.1	"DUF567 domain containing protein, putative, expressed"	Medtr7g077600.1	Protein of unknown function DUF567 	NA	NA	NA
Ptp.6683.1.S1_at	E	E	CA929389	CA929389	NA	NA	Q9LEL6	(RS)-norcoclaurine 6-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os07g28040.2	"O-methyltransferase, putative, expressed"	Medtr4g047310.3	"Blue (type 1) copper domain; O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	NA	NA
Ptp.6683.2.A1_at	E	E	DN490332	DN490332	NA	NA	Q9LEL6	(RS)-norcoclaurine 6-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os12g25490.1	"O-methyltransferase, putative, expressed"	Medtr4g047310.2	"Blue (type 1) copper domain; O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	NA	NA
Ptp.6694.1.S1_at	E	E	DN500172	DN500172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6700.1.S1_at	E	E	CV256883	CV256883	NA	NA	Q9LXT3	Multiprotein-bridging factor 1b	AT3G58680.1	multiprotein bridging factor 1B 	LOC_Os08g27850.1	"endothelial differentiation-related factor 1, putative, expressed"	Medtr4g109950.1	Helix-turn-helix motif 	NA	NA	NA
Ptp.6709.1.S1_x_at	E	E	CF936129	CF936129	scaffold_9:8301053-8302131(-) (11)	NA	Q680P8	40S ribosomal protein S29	AT4G33865.1	Ribosomal protein S14p/S29e family protein 	LOC_Os11g41610.1	"40S ribosomal protein S29, putative"	Medtr5g005230.1	Ribosomal protein S14 	NA	NA	NA
Ptp.6769.2.S1_at	E	E	BU831666	BU831666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6770.1.A1_at	E	E	CV257686	CV257686	scaffold_11:2930508-2933021(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6774.1.A1_s_at	E	E	CV266335	CV266335	NA	NA	Q948T6	Lactoylglutathione lyase	AT1G11840.6	glyoxalase I homolog 	LOC_Os08g09250.2	"glyoxalase family protein, putative, expressed"	Medtr8g146950.2	Glyoxalase/bleomycin resistance protein/dioxygenase 	NA	NA	NA
Ptp.6776.1.S1_at	E	E	DN499137	DN499137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6792.1.S1_at	E	E	CA928793	CA928793	NA	NA	NA	NA	NA	NA	LOC_Os11g10590.1	hypothetical protein	NA	NA	NA	NA	NA
Ptp.6798.1.S1_at	E	E	DN499640	DN499640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.68.3.S1_at	E	E	CV262974	CV262974	NA	NA	NA	NA	AT1G56700.3	"Peptidase C15, pyroglutamyl peptidase I-like "	LOC_Os07g44610.2	"pyrrolidone-carboxylate peptidase, putative, expressed"	Medtr1g102840.1	"Peptidase C15, pyroglutamyl peptidase I "	NA	NA	NA
Ptp.6808.1.S1_at	E	E	DN499736	DN499736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6810.1.S1_at	E	E	DN489863	DN489863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6821.1.S1_at	E	E	BU888272	BU888272	NA	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os08g30020.4	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	NA
Ptp.6826.1.S1_at	E	E	DN490286	DN490286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6847.3.S1_at	E	E	CV228377	CV228377	NA	NA	Q15GI4	Eugenol synthase 1	AT4G39230.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009310.1	NmrA-like 	NA	NA	NA
Ptp.6848.1.S1_at	E	E	CA825193	CA825193	NA	NA	P52855	60S acidic ribosomal protein P1	AT5G47700.2	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	NA	NA	NA
Ptp.6848.2.S1_at	E	E	BI131458	BI131458	NA	NA	P52855	60S acidic ribosomal protein P1	AT4G00810.2	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	NA	NA	NA
Ptp.6855.1.S1_at	E	E	BU825961	BU825961	NA	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	NA	NA	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	NA	NA
Ptp.6857.1.S1_at	E	E	BU833205	BU833205	NA	NA	Q0D9C7	Cyclin-B2-2	AT1G20610.1	Cyclin B2;3 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	NA
Ptp.6912.1.S1_at	E	E	CV277311	CV277311	NA	NA	Q07469	Bark storage protein A	AT4G24340.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	NA	NA	NA
Ptp.6913.1.A1_at	E	E	DN490324	DN490324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6918.1.S1_at	E	E	DN484855	DN484855	NA	NA	Q962R1	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	NA	NA	NA
Ptp.6925.1.S1_at	E	E	BU829503	BU829503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6935.1.S1_at	E	E	CV278673	CV278673	NA	NA	NA	NA	AT1G62780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). "	LOC_Os04g01540.1	expressed protein	Medtr5g012140.2	hypothetical protein 	NA	NA	NA
Ptp.6940.1.S1_at	E	E	BU829342	BU829342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6941.1.S1_at	E	E	CF233332	CF233332	NA	NA	NA	NA	AT1G27290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g147180.2	hypothetical protein 	NA	NA	NA
Ptp.6947.1.S1_at	E	E	DN488701	DN488701	NA	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT1G08080.1	alpha carbonic anhydrase 7 	LOC_Os08g36630.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	NA	NA	NA
Ptp.695.1.S1_at	E	E	AI162559	AI162559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6975.1.S1_at	E	E	DN488939	DN488939	NA	NA	NA	NA	NA	NA	LOC_Os04g42870.2	"methyltransferase domain containing protein, putative, expressed"	Medtr5g035030.1	UbiE/COQ5 methyltransferase 	NA	NA	NA
Ptp.7005.1.S1_at	E	E	DN488752	DN488752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7022.1.S1_at	E	E	CF235511	CF235511	NA	NA	P17815	"Malate synthase, glyoxysomal"	AT5G03860.2	malate synthase 	LOC_Os04g40990.1	"malate synthase, glyoxysomal, putative, expressed"	AC233577_29.1	Malate synthase AC233577.5 145991-143239 F EGN_Mt090430 200	NA	NA	NA
Ptp.704.1.S1_at	E	E	CF228462	CF228462	NA	NA	NA	NA	AT1G50120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os06g41440.2	expressed protein	Medtr8g009320.1	"Peptidase aspartic, active site "	NA	NA	NA
Ptp.7051.1.S1_at	E	E	BU883904	BU883904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7053.1.S1_s_at	E	E	DN502687	DN502687	scaffold_18:12551181-12551512(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7056.1.S1_at	E	E	BU884296	BU884296	scaffold_16:13445765-13446040(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7061.1.S1_x_at	E	E	DN497596	DN497596	scaffold_15:12325713-12326108(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7077.1.S1_at	E	E	DN488141	DN488141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7078.1.S1_at	E	E	DN488158	DN488158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7079.1.S1_at	E	E	DN488160	DN488160	scaffold_8:5155873-5156206(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7091.1.S1_at	E	E	BU884575	BU884575	NA	NA	NA	NA	AT5G07150.1	Leucine-rich repeat protein kinase family protein 	LOC_Os05g39410.1	expressed protein	Medtr1g102890.1	Tyrosine protein kinase 	NA	NA	NA
Ptp.7092.1.S1_at	E	E	BU886223	BU886223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7097.1.S1_at	E	E	DN488304	DN488304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7099.1.S1_s_at	E	E	BU810141	BU810141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7102.1.A1_at	E	E	DN488354	DN488354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7109.1.S1_at	E	E	CK110629	CK110629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7109.1.S1_s_at	E	E	CK110629	CK110629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7118.1.S1_at	E	E	DN498153	DN498153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7133.1.S1_at	E	E	DN497613	DN497613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7138.1.S1_at	E	E	DN497634	DN497634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7141.1.A1_at	E	E	DN488043	DN488043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7141.2.A1_at	E	E	CV229325	CV229325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7144.1.S1_at	E	E	DN488068	DN488068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7161.1.S1_s_at	E	E	CV242429	CV242429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7163.1.S1_at	E	E	DN488264	DN488264	NA	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	NA	NA
Ptp.7169.1.S1_at	E	E	DN497988	DN497988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7170.1.S1_at	E	E	DN497999	DN497999	NA	NA	P13240	Disease resistance response protein 206	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44930.1	"dirigent, putative, expressed"	Medtr8g137520.1	Plant disease resistance response protein 	NA	NA	NA
Ptp.7173.1.S1_at	E	E	CV239967	CV239967	scaffold_18:12161823-12162455(-) (9)	NA	Q9SUI0	UPF0057 membrane protein At4g30660	AT4G28088.1	Low temperature and salt responsive protein family 	LOC_Os06g08564.1	"OsRCI2-8 - Putative low temperature and salt responsive protein, expressed"	Medtr8g145140.1	Protein of unknown function UPF0057 	NA	NA	NA
Ptp.7175.2.S1_at	E	E	BU896841	BU896841	NA	NA	NA	NA	NA	NA	NA	NA	Medtr8g025840.2	Dormancyauxin associated 	NA	NA	NA
Ptp.718.1.A1_at	E	E	CK088093	CK088093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7182.1.S1_at	E	E	BU886029	BU886029	NA	NA	Q8T191	Probable UDP-glucose:glycoprotein glucosyltransferase A	AT1G71220.2	"UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups "	LOC_Os02g44510.1	"UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed"	Medtr2g007060.1	UDP-glucose:Glycoprotein Glucosyltransferase 	NA	NA	NA
Ptp.7186.1.A1_at	E	E	DN488399	DN488399	NA	NA	Q17QV2	Vacuolar fusion protein MON1 homolog A	AT2G28390.1	SAND family protein 	LOC_Os01g74460.2	"vacuolar fusion protein MON1 homolog A, putative, expressed"	Medtr2g110230.1	Yeast 73.5kDa hypothetical-related protein 	NA	NA	NA
Ptp.7188.1.A1_at	E	E	DN487986	DN487986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7215.1.S1_at	E	E	DN492436	DN492436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7227.1.S1_at	E	E	DN492620	DN492620	NA	NA	NA	NA	AT2G39580.1	CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr7g025360.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	NA
Ptp.7238.1.S1_at	E	E	DN492758	DN492758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7243.1.A1_at	E	E	BU896385	BU896385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7251.1.S1_at	E	E	DN493023	DN493023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7253.1.S1_at	E	E	BU896567	BU896567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7255.1.S1_at	E	E	DN493072	DN493072	NA	NA	NA	NA	AT1G16290.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). "	LOC_Os02g07480.2	"transglycosylase SLT domain containing protein, expressed"	NA	NA	NA	NA	NA
Ptp.7259.1.A1_at	E	E	DN487946	DN487946	NA	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	NA	NA	NA
Ptp.7265.1.S1_at	E	E	CX658727	CX658727	NA	NA	Q6NRL0	PrdX-deacylase domain-containing protein 1	AT1G44835.2	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g52880.2	"ybaK/prolyl-tRNA synthetase family protein, putative, expressed"	Medtr3g097700.1	YbaK/prolyl-tRNA synthetase associated region 	NA	NA	NA
Ptp.727.1.A1_at	E	E	CK088224	CK088224	NA	NA	NA	NA	AT4G15800.1	ralf-like 33 	LOC_Os12g35670.1	"RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed"	Medtr7g138890.1	Rapid ALkalinization Factor 	NA	NA	NA
Ptp.7270.1.A1_at	E	E	DN493222	DN493222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7283.1.S1_s_at	E	E	BU894467	BU894467	scaffold_14:10349788-10350731(+) (10)	NA	NA	NA	AT3G19340.1	Protein of unknown function (DUF3754) 	LOC_Os12g29550.1	expressed protein	Medtr7g097260.1	hypothetical protein 	NA	NA	NA
Ptp.7292.1.S1_at	E	E	CF237326	CF237326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7293.1.S1_at	E	E	BU895558	BU895558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7301.1.S1_at	E	E	DN502702	DN502702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7310.1.S1_at	E	E	DN492822	DN492822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7313.1.S1_at	E	E	DN492885	DN492885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7317.1.S1_at	E	E	CV242794	CV242794	scaffold_5:22130879-22131203(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7331.1.S1_at	E	E	DN503167	DN503167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7334.1.S1_at	E	E	DN493183	DN493183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7336.1.A1_at	E	E	DN493197	DN493197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7338.1.S1_at	E	E	DN493227	DN493227	NA	NA	Q8IYB8	"ATP-dependent RNA helicase SUPV3L1, mitochondrial"	AT5G39840.1	"ATP-dependent RNA helicase, mitochondrial, putative "	LOC_Os04g38630.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g006820.1	"Helicase, C-terminal "	NA	NA	NA
Ptp.7347.1.S1_s_at	E	E	CV236704	CV236704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7348.1.S1_s_at	E	E	CV280185	CV280185	NA	NA	A4GYX2	"NAD(P)H-quinone oxidoreductase subunit H, chloroplastic"	ATCG01110.1	NAD(P)H dehydrogenase subunit H 	LOC_Os04g16732.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr4g022970.1	"NADH-ubiquinone oxidoreductase, chain 49kDa; Respiratory-chain NADH dehydrogenase, subunit 1 "	NA	NA	NA
Ptp.7350.1.S1_at	E	E	DN485442	DN485442	NA	NA	Q28IL6	60S ribosomal protein L22	AT5G27770.1	Ribosomal L22e protein family 	LOC_Os07g47710.1	"60S ribosomal protein L22-2, putative, expressed"	Medtr7g138600.1	Ribosomal L22e protein 	NA	NA	NA
Ptp.7351.1.S1_at	E	E	DN485444	DN485444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7353.1.S1_at	E	E	DN485454	DN485454	NA	NA	O93931	40S ribosomal protein S26	AT2G40590.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.1	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	NA	NA	NA
Ptp.736.1.A1_s_at	E	E	CV249105	CV249105	NA	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	NA	NA	NA
Ptp.7362.1.S1_at	E	E	DN485658	DN485658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7366.1.S1_at	E	E	DN485689	DN485689	NA	NA	Q7RVN0	60S ribosomal protein L11	AT5G45775.2	Ribosomal L5P family protein 	LOC_Os02g14059.1	"ribosomal protein L5, putative, expressed"	Medtr8g050250.1	Ribosomal protein L5 	NA	NA	NA
Ptp.7368.1.S1_at	E	E	DN485698	DN485698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.737.1.A1_at	E	E	CK088498	CK088498	scaffold_13:1917718-1917994(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7371.1.S1_at	E	E	DN495229	DN495229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7384.1.S1_at	E	E	DN495360	DN495360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7388.1.S1_at	E	E	BU815467	BU815467	NA	NA	Q9UVI4	Trihydrophobin	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7390.1.S1_at	E	E	DN485888	DN485888	NA	NA	Q9SHE9	LOB domain-containing protein 4	AT1G31320.1	LOB domain-containing protein 4 	LOC_Os03g45750.1	"DUF260 domain containing protein, putative, expressed"	Medtr2g087980.1	Protein of unknown function DUF260 	NA	NA	NA
Ptp.7399.1.S1_at	E	E	DN495546	DN495546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.74.1.S1_at	E	E	CV225344	CV225344	NA	NA	NA	NA	AT5G67070.1	ralf-like 34 	NA	NA	Medtr5g017130.1	Rapid ALkalinization Factor 	NA	NA	NA
Ptp.7400.1.S1_at	E	E	DN495557	DN495557	NA	NA	P55143	Glutaredoxin	AT5G40370.1	Glutaredoxin family protein 	LOC_Os04g42930.1	"OsGrx_C2.2 - glutaredoxin subgroup I, expressed"	Medtr2g043290.3	Thioredoxin-like fold 	NA	NA	NA
Ptp.7401.1.A1_at	E	E	DN486023	DN486023	NA	NA	P28737	Protein MSP1	AT1G50140.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g12160.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g101160.1	"AAA ATPase, central region "	NA	NA	NA
Ptp.7407.1.A1_s_at	E	E	CV258092	CV258092	scaffold_11:8142992-8143171(-) (9)	NA	NA	NA	AT2G42610.2	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g092170.1	Protein of unknown function DUF640 	NA	NA	NA
Ptp.7413.1.S1_at	E	E	DN486145	DN486145	NA	NA	Q7RZS0	60S ribosomal protein L10a	AT5G22440.2	Ribosomal protein L1p/L10e family 	LOC_Os08g44380.2	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr3g094120.1	Ribosomal protein L1 	NA	NA	NA
Ptp.7414.1.A1_x_at	E	E	CV249617	CV249617	scaffold_8:3098284-3100229(+) (10)	NA	NA	NA	AT3G12587.1	Oligosaccaryltransferase 	NA	NA	Medtr7g118190.1	hypothetical protein 	NA	NA	NA
Ptp.7417.2.A1_at	E	E	CV226824	CV226824	NA	NA	Q8HXE3	Kidney mitochondrial carrier protein 1	AT2G22500.1	uncoupling protein 5 	LOC_Os08g37370.2	"mitochondrial carrier protein, putative, expressed"	Medtr5g033920.1	Mitochondrial substrate carrier 	NA	NA	NA
Ptp.7421.1.S1_at	E	E	BI126123	BI126123	NA	NA	P29602	Cucumber peeling cupredoxin	AT2G31050.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	NA	NA
Ptp.7427.1.S1_at	E	E	DN485526	DN485526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7431.1.S1_at	E	E	BU813723	BU813723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7432.1.S1_at	E	E	DN499787	DN499787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7436.1.S1_at	E	E	DN485666	DN485666	NA	NA	P49377	"ATP synthase subunit gamma, mitochondrial"	AT2G33040.1	gamma subunit of Mt ATP synthase 	LOC_Os10g17280.1	"ATP synthase gamma chain, putative, expressed"	NA	NA	NA	NA	NA
Ptp.7438.1.S1_at	E	E	DN485677	DN485677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7447.1.S1_at	E	E	DN485772	DN485772	NA	NA	Q9USW5	40S ribosomal protein S4-B	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os05g30530.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	NA	NA
Ptp.7450.1.S1_at	E	E	DN485787	DN485787	scaffold_107:9751-10035(+) (10)//scaffold_5:1195477-1195761(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7452.1.S1_at	E	E	DN485842	DN485842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7455.1.S1_at	E	E	BU815522	BU815522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7461.1.A1_at	E	E	DN485993	DN485993	NA	NA	Q4P4C2	40S ribosomal protein S1	AT4G34670.1	Ribosomal protein S3Ae 	LOC_Os03g10340.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	NA	NA	NA
Ptp.7462.2.S1_at	E	E	BU809684	BU809684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7465.1.S1_at	E	E	DN486030	DN486030	NA	NA	Q757D7	60S ribosomal protein L31	AT5G56710.1	Ribosomal protein L31e family protein 	LOC_Os02g48660.1	"60S ribosomal protein L31, putative, expressed"	Medtr4g160530.1	Ribosomal protein L31e 	NA	NA	NA
Ptp.7471.1.S1_at	E	E	DN495652	DN495652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7475.1.S1_at	E	E	DN485585	DN485585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7483.1.S1_at	E	E	BU815242	BU815242	NA	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os05g41370.1	"TKL_IRAK_DUF26-la.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_56.1	Tyrosine protein kinase AC235009.1 241618-238414 E EGN_Mt090430 200	NA	NA	NA
Ptp.749.1.A1_at	E	E	CK088681	CK088681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7490.1.S1_at	E	E	DN485752	DN485752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7491.1.S1_at	E	E	DN493441	DN493441	NA	NA	Q6QPJ6	"Peroxiredoxin Q, chloroplastic"	AT3G26060.1	Thioredoxin superfamily protein 	LOC_Os06g09610.2	"peroxiredoxin, putative, expressed"	Medtr8g133010.1	Thioredoxin fold 	NA	NA	NA
Ptp.7492.1.S1_at	E	E	DN485914	DN485914	NA	NA	P51417	60S ribosomal protein L15 (Fragment)	AT4G16720.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	NA	NA	NA
Ptp.7498.1.S1_at	E	E	CK110336	CK110336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7499.1.S1_at	E	E	DN495509	DN495509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7502.1.S1_at	E	E	CF229244	CF229244	NA	NA	Q9FI40	BAHD acyltransferase At5g47980	AT3G26040.1	HXXXD-type acyl-transferase family protein 	NA	NA	Medtr2g008030.1	Transferase 	NA	NA	NA
Ptp.7503.1.S1_at	E	E	CV245507	CV245507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7505.1.S1_at	E	E	CV275500	CV275500	NA	NA	Q14FB1	"30S ribosomal protein S12, chloroplastic"	ATCG00905.1	ribosomal protein S12C 	NA	NA	Medtr4g042400.1	"Nucleic acid-binding, OB-fold, subgroup "	NA	NA	NA
Ptp.7512.1.S1_s_at	E	E	CK112401	CK112401	NA	NA	A4GYV1	"30S ribosomal protein S19, chloroplastic"	ATCG00820.1	ribosomal protein S19 	LOC_Os09g24412.1	"chloroplast 30S ribosomal protein S19, putative"	Medtr3g043790.1	Ribosomal protein S19/S15 	NA	NA	NA
Ptp.7514.1.S1_at	E	E	CK109314	CK109314	NA	NA	A4GYS2	Photosystem I assembly protein ycf4	ATCG00520.1	unfolded protein binding 	LOC_Os06g39744.1	"photosystem I assembly protein ycf4, putative"	NA	NA	NA	NA	NA
Ptp.7515.1.S1_at	E	E	CK109405	CK109405	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g029360.1	"Myb, DNA-binding; Homeodomain-related "	NA	NA	NA
Ptp.7515.1.S1_s_at	E	E	CK109405	CK109405	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g029360.1	"Myb, DNA-binding; Homeodomain-related "	NA	NA	NA
Ptp.7516.1.S1_at	E	E	DN495108	DN495108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7518.1.S1_at	E	E	DN483594	DN483594	NA	NA	A4GYP3	"ATP synthase subunit alpha, chloroplastic"	ATCG00120.1	ATP synthase subunit alpha 	LOC_Os04g16740.1	"ATP synthase subunit alpha, putative, expressed"	Medtr4g042360.1	ATPase FliI/YscN 	NA	NA	NA
Ptp.752.1.A1_at	E	E	CK088695	CK088695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.753.1.A1_at	E	E	CK088732	CK088732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7531.1.S1_at	E	E	BU825748	BU825748	NA	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G01300.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g41550.1	"aspartic proteinase, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	NA	NA	NA
Ptp.7532.1.S1_at	E	E	BU832220	BU832220	NA	NA	P62981	Ubiquitin-40S ribosomal protein S27a	AT2G47110.2	ubiquitin 6 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	NA	NA	NA
Ptp.7539.2.A1_at	E	E	DN485981	DN485981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.754.2.S1_at	E	E	CV273722	CV273722	NA	NA	Q6P4K8	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	AT1G26550.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g24540.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g090170.1	PpiC-type peptidyl-prolyl cis-trans isomerase 	NA	NA	NA
Ptp.7542.1.S1_at	E	E	CK093416	CK093416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7543.1.S1_a_at	E	E	CK103578	CK103578	NA	NA	NA	NA	AT5G03345.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g37880.1	expressed protein	Medtr7g123870.1	"AAA ATPase VAT, N-terminal "	NA	NA	NA
Ptp.7553.3.A1_at	E	E	CK090014	CK090014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7564.1.S1_at	E	E	CK093028	CK093028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7567.1.S1_at	E	E	CK093667	CK093667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7578.1.A1_s_at	E	E	CV237629	CV237629	scaffold_16:11322894-11323218(-) (11)	NA	O80437	Glycerol-3-phosphate acyltransferase 6	AT2G38110.1	glycerol-3-phosphate acyltransferase 6 	LOC_Os01g63580.1	"glycerol-3-phosphate acyltransferase, putative, expressed"	Medtr3g024620.1	Phospholipid/glycerol acyltransferase 	NA	NA	NA
Ptp.7588.1.S1_at	E	E	DN494388	DN494388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7591.1.S1_at	E	E	DN494876	DN494876	scaffold_6:23852277-23852419(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7592.1.S1_at	E	E	DN494919	DN494919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7593.1.S1_at	E	E	BU813258	BU813258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7595.1.S1_at	E	E	DN494989	DN494989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7596.1.S1_at	E	E	BU813400	BU813400	NA	NA	Q96W55	60S ribosomal protein L39	AT3G02190.1	Ribosomal protein L39 family protein 	LOC_Os02g55370.1	"60S ribosomal protein L39, putative, expressed"	Medtr3g137960.1	Ribosomal protein L39e 	NA	NA	NA
Ptp.7600.1.S1_at	E	E	BU814224	BU814224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7604.1.S1_at	E	E	DN485449	DN485449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7606.1.S1_at	E	E	BU813437	BU813437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7608.1.S1_at	E	E	BU813741	BU813741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7609.1.S1_at	E	E	DN485563	DN485563	scaffold_9:5612210-5612947(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7612.1.S1_at	E	E	CK109802	CK109802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7613.1.S1_at	E	E	BU815550	BU815550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7615.1.S1_at	E	E	BU814699	BU814699	scaffold_11:15801988-15802184(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7617.1.S1_at	E	E	BU816429	BU816429	NA	NA	P29429	Thioredoxin	AT3G08710.2	thioredoxin H-type 9 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr1g028610.1	Thioredoxin-related; Thioredoxin domain 2; 	NA	NA	NA
Ptp.7618.1.S1_at	E	E	DN495605	DN495605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7619.1.S1_at	E	E	BU816163	BU816163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7645.1.S1_at	E	E	DN497996	DN497996	scaffold_21:343218-343610(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7648.1.S1_at	E	E	AJ776094	AJ776094	NA	NA	NA	NA	AT1G71980.1	Protease-associated (PA) RING/U-box zinc finger family protein 	LOC_Os03g07130.4	"RING finger protein 13, putative, expressed"	NA	NA	NA	NA	NA
Ptp.765.1.A1_at	E	E	CK088866	CK088866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7651.1.S1_at	E	E	CF228467	CF228467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7653.2.S1_at	E	E	CV248323	CV248323	NA	NA	P04794	17.5 kDa class I heat shock protein	AT2G29500.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16030.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067230.1	HSP20-like chaperone 	NA	NA	NA
Ptp.7660.1.S1_at	E	E	DN498455	DN498455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7660.2.S1_at	E	E	DN499179	DN499179	scaffold_5:5942977-5943375(-) (9)	NA	NA	NA	AT5G10010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
Ptp.7662.1.A1_s_at	E	E	CV254791	CV254791	scaffold_6:18635213-18635393(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7726.1.S1_at	E	E	DN498230	DN498230	scaffold_18:3293440-3293811(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7730.1.S1_at	E	E	DN498960	DN498960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7734.1.S1_at	E	E	DN499024	DN499024	NA	NA	Q9SJE1	"Magnesium-chelatase subunit chlD, chloroplastic"	AT1G08520.1	ALBINA 1 	LOC_Os03g59640.1	"magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed"	Medtr5g009090.1	Cobaltochelatase subunit 	NA	NA	NA
Ptp.7747.1.S1_at	E	E	BU886195	BU886195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7750.1.S1_at	E	E	DN499232	DN499232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7756.1.S1_at	E	E	DN499403	DN499403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.776.1.A1_at	E	E	CK089153	CK089153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7782.1.A1_at	E	E	DN499166	DN499166	NA	NA	NA	NA	AT1G70230.1	TRICHOME BIREFRINGENCE-LIKE 27 	LOC_Os09g20850.1	expressed protein	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	NA	NA	NA
Ptp.7796.1.S1_at	E	E	DN499290	DN499290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7797.1.S1_at	E	E	BU833046	BU833046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.780.1.A1_at	E	E	CK089195	CK089195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7807.1.S1_at	E	E	DN499489	DN499489	NA	NA	P92812	"60S ribosomal protein L2, mitochondrial"	ATMG00560.1	"Nucleic acid-binding, OB-fold-like protein "	NA	NA	NA	NA	NA	NA	NA
Ptp.7810.1.S1_at	E	E	DN499549	DN499549	scaffold_14:11637405-11637915(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7812.1.S1_at	E	E	DN499574	DN499574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7822.1.S1_at	E	E	BU836167	BU836167	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g018620.1	Tetratricopeptide-like helical 	NA	NA	NA
Ptp.7826.1.S1_at	E	E	DN499766	DN499766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7829.1.S1_at	E	E	DN499778	DN499778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7837.1.S1_at	E	E	DN499926	DN499926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7837.1.S1_s_at	E	E	DN499926	DN499926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7845.1.S1_at	E	E	DN499699	DN499699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7855.1.S1_at	E	E	DN489922	DN489922	NA	NA	Q9LHF1	Leucine-rich repeat extensin-like protein 4	AT3G24480.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g08470.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr6g102080.1	Leucine-rich repeat 	NA	NA	NA
Ptp.7867.1.S1_at	E	E	DN489138	DN489138	NA	NA	Q6YXZ7	Protein arginine N-methyltransferase 5	AT4G31120.1	SHK1 binding protein 1 	LOC_Os02g04660.1	"arginine N-methyltransferase 5, putative, expressed"	Medtr3g133650.1	Skb1 methyltransferase 	NA	NA	NA
Ptp.787.1.A1_at	E	E	CK089229	CK089229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7875.1.S1_at	E	E	DN500633	DN500633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7876.1.A1_at	E	E	DN490416	DN490416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.790.1.A1_at	E	E	BU837777	BU837777	NA	NA	P21240	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT1G55490.2	chaperonin 60 beta 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	NA	NA	NA	NA	NA
Ptp.7913.1.S1_at	E	E	BU894498	BU894498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7920.1.S1_at	E	E	DN492416	DN492416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7922.1.S1_at	E	E	DN502470	DN502470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7923.1.S1_at	E	E	BU895193	BU895193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7924.1.S1_at	E	E	DN502515	DN502515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7925.1.S1_at	E	E	DN492475	DN492475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7926.1.S1_at	E	E	CA821282	CA821282	NA	NA	Q95747	"60S ribosomal protein L16, mitochondrial"	ATMG00080.1	ribosomal protein L16 	LOC_Os12g34128.1	"mitochondrial 60S ribosomal protein L16, putative"	Medtr4g042460.1	Ribosomal protein L16 	NA	NA	NA
Ptp.7928.1.S1_a_at	E	E	CV275922	CV275922	scaffold_1:31278299-31281815(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7931.2.S1_at	E	E	DN502668	DN502668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.795.1.S1_at	E	E	DN484477	DN484477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.795.2.S1_at	E	E	BI125196	BI125196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7950.1.S1_at	E	E	DN503021	DN503021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7956.1.S1_at	E	E	CV266346	CV266346	NA	NA	Q39224	Protein SRG1	AT5G54000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08060.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr8g088440.3	2OG-Fe(II) oxygenase 	NA	NA	NA
Ptp.7963.1.S1_at	E	E	CK113034	CK113034	scaffold_1:37684779-37685017(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7968.1.S1_at	E	E	DN502745	DN502745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.797.1.S1_at	E	E	BU886963	BU886963	NA	NA	Q7XSA2	Protein argonaute 1B	AT1G48410.1	Stabilizer of iron transporter SufD / Polynucleotidyl transferase 	LOC_Os04g47870.2	"PINHEAD, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
Ptp.7970.1.S1_at	E	E	DN502791	DN502791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7974.1.S1_at	E	E	CV247723	CV247723	NA	NA	P68428	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	NA	NA
Ptp.7979.1.S1_at	E	E	BU896643	BU896643	NA	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT1G28440.1	HAESA-like 1 	LOC_Os01g13800.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr2g018130.1	Protein kinase 	NA	NA	NA
Ptp.7994.1.S1_at	E	E	DN503265	DN503265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7997.1.S1_at	E	E	DN493042	DN493042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8000.1.S1_at	E	E	DN484105	DN484105	NA	NA	P92549	"ATP synthase subunit alpha, mitochondrial"	AT2G07698.1	"ATPase, F1 complex, alpha subunit protein "	LOC_Os09g08910.1	"ATP synthase, putative, expressed"	Medtr1g006540.1	ATPase FliI/YscN 	NA	NA	NA
Ptp.8001.1.S1_at	E	E	DN493130	DN493130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8008.1.S1_at	E	E	DN503236	DN503236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8009.1.S1_at	E	E	DN503275	DN503275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.801.1.S1_at	E	E	AY435099.1	AY435099.1	NA	NA	Q38865	Expansin-A6	AT2G28950.1	expansin A6 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	NA	NA	NA
Ptp.8012.1.A1_at	E	E	BU898169	BU898169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8013.1.S1_at	E	E	DN484676	DN484676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8019.1.S1_at	E	E	DN494323	DN494323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8025.1.S1_at	E	E	BU815152	BU815152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8033.1.S1_at	E	E	DN487976	DN487976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8045.1.S1_at	E	E	DN488270	DN488270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8047.1.S1_at	E	E	BU886302	BU886302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8051.1.S1_at	E	E	DN498051	DN498051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8071.1.S1_at	E	E	BU831033	BU831033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8073.1.A1_at	E	E	DN484308	DN484308	NA	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os04g40310.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	NA	NA	NA
Ptp.8078.1.S1_at	E	E	BU834628	BU834628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8079.1.S1_at	E	E	BU831247	BU831247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.808.1.S1_at	E	E	BU814257	BU814257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8087.1.S1_at	E	E	DN489984	DN489984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.809.2.S1_at	E	E	BU837831	BU837831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8095.1.S1_at	E	E	DN490739	DN490739	NA	NA	NA	NA	AT5G60710.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g56280.1	"zinc finger family protein, putative, expressed"	Medtr1g120670.1	"Zinc finger, RING-type; von Willebrand factor, type A "	NA	NA	NA
Ptp.8112.1.S1_at	E	E	DN492828	DN492828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8123.1.A1_at	E	E	DN492991	DN492991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8125.1.S1_at	E	E	DN493092	DN493092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8128.1.A1_at	E	E	CV245874	CV245874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.813.1.S1_at	E	E	CV268883	CV268883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.832.1.S1_at	E	E	CK089569	CK089569	NA	NA	Q6AWU6	Probable thiol methyltransferase 2	AT2G43940.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06040.1	expressed protein	NA	NA	NA	NA	NA
Ptp.837.1.S1_at	E	E	CK089405	CK089405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.84.2.A1_at	E	E	BU892274	BU892274	NA	NA	P05478	18.5 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr4g124600.1	HSP20-like chaperone 	NA	NA	NA
Ptp.881.2.A1_at	E	E	CV283027	CV283027	NA	NA	Q9FKW6	"Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic"	AT5G66190.2	ferredoxin-NADP(+)-oxidoreductase 1 	LOC_Os02g01340.2	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr5g022240.1	Oxidoreductase FAD/NAD(P)-binding 	NA	NA	NA
Ptp.883.1.A1_at	E	E	CK090129	CK090129	NA	NA	Q9SJB4	GDSL esterase/lipase At2g04570	AT2G04570.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g04710.2	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g106480.1	"Lipolytic enzyme, G-D-S-L "	NA	NA	NA
Ptp.889.1.S1_at	E	E	BI072818	BI072818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.893.2.S1_a_at	E	E	CK089564	CK089564	NA	NA	NA	NA	AT2G27385.3	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr2g107610.1	hypothetical protein 	NA	NA	NA
Ptp.899.1.S1_at	E	E	CK089331	CK089331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.902.1.S1_s_at	E	E	CK089342	CK089342	scaffold_2:21979720-21979800(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.906.1.A1_at	E	E	CK089361	CK089361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.931.1.S1_at	E	E	CK097802	CK097802	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	NA	NA	NA
Ptp.941.1.S1_at	E	E	CK089608	CK089608	NA	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	NA	NA	NA
Ptp.945.1.A1_at	E	E	CK089629	CK089629	NA	NA	P12360	"Chlorophyll a-b binding protein 6A, chloroplastic"	AT3G54890.1	photosystem I light harvesting complex gene 1 	LOC_Os06g21590.1	"chlorophyll A-B binding protein, putative, expressed"	NA	NA	NA	NA	NA
Ptp.948.1.S1_at	E	E	CK089647	CK089647	NA	NA	NA	NA	AT3G13040.2	myb-like HTH transcriptional regulator family protein 	NA	NA	NA	NA	NA	NA	NA
Ptp.949.1.A1_at	E	E	CK089655	CK089655	NA	NA	NA	NA	AT5G02600.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g60480.1	"heavy metal-associated domain containing protein, expressed"	Medtr7g120660.1	Heavy metal transport/detoxification protein 	NA	NA	NA
Ptp.96.2.S1_at	E	E	BU837199	BU837199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.966.1.A1_at	E	E	CK089774	CK089774	NA	NA	Q9SJ73	Pentatricopeptide repeat-containing protein At2g04860	AT2G04860.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g15800.1	"tetratricopeptide-like helical, putative"	Medtr3g147780.1	Calcium-binding EF-hand 	NA	NA	NA
Ptp.994.1.A1_at	E	E	DN488397	DN488397	NA	NA	A7SK27	Probable ethanolamine kinase	AT1G74320.1	Protein kinase superfamily protein 	LOC_Os05g45880.1	"phosphotransferase, putative, expressed"	Medtr8g044390.1	"Choline/ethanolamine kinase; Choline kinase, N-terminal "	NA	NA	NA
PtpAffx.100093.1.A1_s_at	E	E	BP931712	BP931712	NA	NA	P10330	NADH-ubiquinone oxidoreductase chain 5	ATMG00665.1	NADH dehydrogenase 5B 	LOC_Os10g21418.1	"NADPH-dependent oxidoreductase, putative"	Medtr1g007860.1	"NADH-ubiquinone oxidoreductase, chain 5 "	NA	NA	NA
PtpAffx.10103.2.S1_at	E	E	DN490373	DN490373	NA	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT1G02270.1	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.2	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC233662_5.1	Endonuclease/exonuclease/phosphatase AC233662.1 17825-15079 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.10109.1.A1_at	E	E	CV278650	CV278650	NA	NA	P92934	Amino acid permease 6	AT5G49630.1	amino acid permease 6 	LOC_Os07g04180.1	"amino acid transporter, putative, expressed"	Medtr1g008410.1	"amino acid permease 6, putative "	NA	NA	NA
PtpAffx.101603.1.A1_at	E	E	CV227118	CV227118	NA	NA	A4GYR2	"30S ribosomal protein S4, chloroplastic"	ATCG00380.1	chloroplast ribosomal protein S4 	LOC_Os10g38214.1	"chloroplast 30S ribosomal protein S4, putative"	Medtr3g169480.1	Ribosomal protein S4 	NA	NA	NA
PtpAffx.101635.1.A1_at	E	E	CV257103	CV257103	scaffold_7:3674153-3674603(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101654.1.A1_at	E	E	CV256303	CV256303	NA	NA	Q9SA16	Protein PHLOEM PROTEIN 2-LIKE A9	AT1G10155.1	phloem protein 2-A10 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101797.1.S1_at	E	E	CV265757	CV265757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101797.2.S1_at	E	E	BU882145	BU882145	NA	NA	Q9SD88	UPF0139 membrane protein At5g07960	AT5G07960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g54980.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.101857.1.A1_at	E	E	CV248457	CV248457	scaffold_1:37501398-37501788(+) (10)	NA	A4GYW4	"NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic"	ATCG01010.1	"NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein "	LOC_Os10g21418.1	"NADPH-dependent oxidoreductase, putative"	Medtr7g021690.1	"NADH-plastoquinone oxidoreductase, chain 5 "	NA	NA	NA
PtpAffx.101860.1.A1_at	E	E	CV248145	CV248145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101885.1.A1_at	E	E	CV247062	CV247062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101898.1.A1_at	E	E	CV245973	CV245973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101907.1.A1_at	E	E	CV245569	CV245569	scaffold_10:12908984-12909482(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101910.1.A1_at	E	E	CV245509	CV245509	NA	NA	P02518	Heat shock protein 27	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101928.1.A1_at	E	E	CV244732	CV244732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101965.1.A1_at	E	E	CV245253	CV245253	NA	NA	Q93113	"Glutathione S-transferase 1, isoform D"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101978.1.A1_at	E	E	CV242541	CV242541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101987.1.A1_at	E	E	CV242225	CV242225	scaffold_18:13922309-13922712(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101994.1.A1_at	E	E	CV242078	CV242078	scaffold_1:20145435-20145882(-) (9)//scaffold_19:11803045-11803501(-) (11)//scaffold_9:11822142-11822608(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102010.1.A1_at	E	E	CV249098	CV249098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102024.1.A1_at	E	E	CV240725	CV240725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102025.1.A1_at	E	E	CV240706	CV240706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102041.1.A1_at	E	E	CV240319	CV240319	scaffold_13:2977218-2977610(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102055.1.A1_at	E	E	CV243889	CV243889	NA	NA	P92201	Larval cuticle protein 8	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102156.1.A1_at	E	E	CV263498	CV263498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102158.1.A1_at	E	E	CV261936	CV261936	NA	NA	Q10FZ7	Protein YABBY 2	AT1G08465.1	Plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr2g104680.1	YABBY protein 	NA	NA	NA
PtpAffx.102185.1.A1_at	E	E	CV234390	CV234390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102226.1.A1_at	E	E	CV232979	CV232979	scaffold_10:10411187-10411322(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102228.1.A1_at	E	E	CV232856	CV232856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102294.1.A1_at	E	E	CV230528	CV230528	scaffold_14:4310041-4310436(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102316.2.S1_at	E	E	CV230723	CV230723	NA	NA	NA	NA	AT5G47635.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g14194.1	"POEI28 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	NA	NA	NA	NA	NA
PtpAffx.102334.1.A1_at	E	E	CV229078	CV229078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102349.1.A1_at	E	E	CV228410	CV228410	scaffold_3:15778272-15778721(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102425.2.A1_at	E	E	CV226024	CV226024	scaffold_16:5390696-5390863(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1025.13.S1_at	E	E	CF232681	CF232681	NA	NA	Q42662	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42876.1	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	NA	NA	NA
PtpAffx.1025.3.S1_s_at	E	E	CV238933	CV238933	NA	NA	Q42662	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42876.1	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	NA	NA	NA
PtpAffx.102658.1.A1_at	E	E	CV254397	CV254397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10267.1.A1_at	E	E	BP932594	BP932594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102687.2.A1_at	E	E	CV234495	CV234495	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g099510.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.10288.1.A1_at	E	E	CV240631	CV240631	NA	NA	Q37680	NADH-ubiquinone oxidoreductase chain 5	ATMG00665.1	NADH dehydrogenase 5B 	NA	NA	Medtr1g007840.1	"NADH-ubiquinone oxidoreductase chain 5, putative "	NA	NA	NA
PtpAffx.102897.1.S1_at	E	E	CA825108	CA825108	NA	NA	NA	NA	AT5G57815.1	"Cytochrome c oxidase, subunit Vib family protein "	LOC_Os07g42910.1	"cytochrome c oxidase subunit, putative, expressed"	Medtr5g073800.1	"Cytochrome oxidase c, subunit VIb "	NA	NA	NA
PtpAffx.102924.1.A1_at	E	E	CV232714	CV232714	scaffold_13:518643-518815(+) (11)	NA	NA	NA	AT1G56440.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g03910.1	"RNA polymerase II-associated protein 3, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.1030.2.A1_at	E	E	CV234552	CV234552	NA	NA	Q9M5X8	Non-specific lipid-transfer protein	AT2G38540.1	lipid transfer protein 1 	LOC_Os11g02369.1	"LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036850.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	NA	NA	NA
PtpAffx.103277.1.S1_at	E	E	DN499767	DN499767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10330.1.A1_at	E	E	CF229685	CF229685	scaffold_2:11736200-11738736(+) (11)	NA	NA	NA	AT4G00585.1	unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os09g38740.1	expressed protein	Medtr7g084340.1	hypothetical protein 	NA	NA	NA
PtpAffx.10330.5.S1_a_at	E	E	CX173789	CX173789	NA	NA	NA	NA	AT4G00585.1	unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os09g38740.1	expressed protein	Medtr7g084340.1	hypothetical protein 	NA	NA	NA
PtpAffx.10330.6.S1_at	E	E	CV245094	CV245094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103575.1.S1_at	E	E	CK090377	CK090377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103638.1.A1_at	E	E	CK097453	CK097453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103705.1.A1_at	E	E	CK095622	CK095622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103773.1.A1_at	E	E	CK092957	CK092957	NA	NA	P85200	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	NA	NA
PtpAffx.103798.1.S1_at	E	E	CK091513	CK091513	scaffold_14:899793-908127(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10384.2.S1_at	E	E	CB240311	CB240311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103848.1.A1_at	E	E	CK088207	CK088207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103912.1.S1_at	E	E	CV256169	CV256169	scaffold_18:5990097-5990303(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.104236.1.A1_at	E	E	CB239504	CB239504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1044.1.A1_at	E	E	CV252915	CV252915	scaffold_2:13143137-13143390(-) (11)	NA	NA	NA	AT2G46540.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g46450.1	"fiber protein Fb11, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.104717.1.S1_at	E	E	DN488329	DN488329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.104732.1.S1_at	E	E	BU894538	BU894538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.104742.1.A1_at	E	E	DN487960	DN487960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.104998.1.S1_at	E	E	BU872153	BU872153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.105172.1.S1_at	E	E	BU834931	BU834931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.105260.1.S1_at	E	E	DN490251	DN490251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.105517.1.A1_at	E	E	BU791223	BU791223	scaffold_15:1920728-1921032(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.105680.1.S1_at	E	E	CV279619	CV279619	NA	NA	P93788	Remorin	AT5G23750.2	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	NA	NA	NA
PtpAffx.105927.1.S1_at	E	E	AI165717	AI165717	NA	NA	Q9FMF5	Root phototropism protein 3	AT2G14820.1	Phototropic-responsive NPH3 family protein 	LOC_Os12g39380.1	"BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr5g015880.1	BTB/POZ; NPH3 	NA	NA	NA
PtpAffx.106036.1.S1_at	E	E	DN500675	DN500675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106051.1.A1_at	E	E	DN490221	DN490221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106057.1.S1_at	E	E	BU837185	BU837185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106206.1.S1_at	E	E	DN503070	DN503070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106209.1.A1_at	E	E	DN493000	DN493000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106252.1.A1_at	E	E	DN491200	DN491200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106271.1.A1_at	E	E	DN489878	DN489878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106274.1.A1_at	E	E	DN489686	DN489686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106278.1.S1_at	E	E	DN498904	DN498904	scaffold_8:9911121-9911286(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106296.1.A1_at	E	E	DN488239	DN488239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106310.1.A1_s_at	E	E	DN487587	DN487587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106653.1.S1_at	E	E	CX173871	CX173871	NA	NA	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.1	"aminopeptidase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.107185.1.A1_at	E	E	CV261240	CV261240	NA	NA	NA	NA	AT5G40510.1	Sucrase/ferredoxin-like family protein 	LOC_Os02g49320.1	"sucrase-related, putative, expressed"	Medtr3g009270.1	Thioredoxin fold 	NA	NA	NA
PtpAffx.107287.1.S1_at	E	E	AJ780041	AJ780041	NA	NA	C0LGS3	Probable LRR receptor-like serine/threonine-protein kinase At4g37250	AT2G23300.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g02250.1	"transposon protein, putative, unclassified, expressed"	Medtr7g076330.1	Protein kinase 	NA	NA	NA
PtpAffx.107361.1.S1_at	E	E	DN500638	DN500638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107465.1.A1_at	E	E	CV281462	CV281462	scaffold_18:14632621-14633105(-) (11)	NA	Q9FZ59	Leucine-rich repeat receptor-like protein kinase PEPR2	AT1G74170.1	receptor like protein 13 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr3g166640.1	"Leucine-rich repeat, typical subtype "	NA	NA	NA
PtpAffx.107560.1.A1_at	E	E	CV276244	CV276244	NA	NA	Q39224	Protein SRG1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.107739.1.A1_at	E	E	CV268802	CV268802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10786.1.S1_a_at	E	E	CV243541	CV243541	scaffold_5:17146147-17146194(+) (11)	NA	NA	NA	AT4G37440.2	unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50040.1); Has 121 Blast hits to 117 proteins in 32 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 5; Plants - 66; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os05g30340.2	expressed protein	Medtr4g128490.1	hypothetical protein 	NA	NA	NA
PtpAffx.10786.1.S1_at	E	E	CV243541	CV243541	scaffold_5:17144750-17146093(+) (9)	NA	NA	NA	AT4G37440.2	unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50040.1); Has 121 Blast hits to 117 proteins in 32 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 5; Plants - 66; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os05g30340.2	expressed protein	Medtr4g128490.1	hypothetical protein 	NA	NA	NA
PtpAffx.108055.1.A1_at	E	E	CV255985	CV255985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108205.1.A1_at	E	E	CV249969	CV249969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10823.1.S1_at	E	E	CV269265	CV269265	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os10g36270.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr4g118190.1	NB-ARC 	NA	NA	NA
PtpAffx.10823.1.S1_s_at	E	E	CV269265	CV269265	NA	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os10g36270.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr4g118190.1	NB-ARC 	NA	NA	NA
PtpAffx.108266.1.A1_at	E	E	CV247266	CV247266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108302.1.A1_at	E	E	CV245656	CV245656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108322.1.A1_at	E	E	CV245001	CV245001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108323.1.A1_at	E	E	CV244938	CV244938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108345.1.A1_at	E	E	CV244128	CV244128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108358.1.A1_at	E	E	CV243579	CV243579	NA	NA	NA	NA	AT4G24610.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1). 	LOC_Os02g52280.1	expressed protein	Medtr5g074970.1	hypothetical protein 	NA	NA	NA
PtpAffx.108390.1.A1_at	E	E	CV242607	CV242607	NA	NA	P46223	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.108396.1.A1_at	E	E	CV242388	CV242388	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr5g038650.1	TIR 	NA	NA	NA
PtpAffx.108443.1.A1_at	E	E	CV240362	CV240362	NA	NA	P52273	Tubulin alpha chain	AT4G14960.2	Tubulin/FtsZ family protein 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	NA	NA	NA
PtpAffx.108464.1.A1_at	E	E	CV239692	CV239692	scaffold_1:33345616-33346048(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108465.1.A1_at	E	E	CV239650	CV239650	NA	NA	P36241	60S ribosomal protein L19	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g38260.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	NA	NA	NA
PtpAffx.108502.1.A1_at	E	E	BI127008	BI127008	scaffold_12:8932928-8934160(+) (11)	NA	Q7X843	RING-H2 finger protein ATL48	AT3G48030.1	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os09g20900.1	"hypoxia-responsive family protein, putative, expressed"	Medtr8g125330.1	Hypoxia induced protein conserved region 	NA	NA	NA
PtpAffx.108502.1.A1_x_at	E	E	BI127008	BI127008	scaffold_12:8932928-8934198(+) (11)	NA	Q7X843	RING-H2 finger protein ATL48	AT3G48030.1	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os09g20900.1	"hypoxia-responsive family protein, putative, expressed"	Medtr8g125330.1	Hypoxia induced protein conserved region 	NA	NA	NA
PtpAffx.108505.1.A1_at	E	E	CV236981	CV236981	NA	NA	O31760	Ribonuclease J 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108567.1.A1_at	E	E	CV235225	CV235225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108587.1.A1_at	E	E	CV234168	CV234168	scaffold_14:7455085-7455640(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108710.1.A1_at	E	E	CV228977	CV228977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108736.1.A1_at	E	E	CV227848	CV227848	scaffold_2:8817326-8817598(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10875.1.S1_at	E	E	CV275219	CV275219	NA	NA	P41891	Protein gar2	AT1G48920.1	nucleolin like 1 	LOC_Os04g52960.1	"nucleolin, putative, expressed"	Medtr4g101170.1	"Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.108756.1.A1_at	E	E	CV226978	CV226978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108806.1.S1_at	E	E	CN519486	CN519486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10889.1.S1_at	E	E	CV283550	CV283550	NA	NA	Q9ZRA4	Auxin-binding protein ABP19a	AT1G72610.1	germin-like protein 1 	LOC_Os08g35760.1	"Cupin domain containing protein, expressed"	Medtr8g024770.1	Germin 	NA	NA	NA
PtpAffx.109010.1.S1_at	E	E	AJ776585	AJ776585	NA	NA	Q8T7K0	ALG-2 interacting protein X	AT1G15130.1	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os10g35250.1	"vacuolar protein-sorting protein bro1, putative, expressed"	Medtr1g137820.1	"ALG2-interacting protein X, putative "	NA	NA	NA
PtpAffx.109173.1.S1_s_at	E	E	AJ769368	AJ769368	scaffold_16:11323612-11325381(-) (11)	NA	O80437	Glycerol-3-phosphate acyltransferase 6	AT2G38110.1	glycerol-3-phosphate acyltransferase 6 	LOC_Os01g63580.1	"glycerol-3-phosphate acyltransferase, putative, expressed"	Medtr3g024620.1	Phospholipid/glycerol acyltransferase 	NA	NA	NA
PtpAffx.109183.1.A1_at	E	E	AJ769025	AJ769025	NA	NA	NA	NA	AT3G50910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66480.1); Has 76 Blast hits to 75 proteins in 28 species: Archae - 0; Bacteria - 10; Metazoa - 7; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os02g47580.1	expressed protein	Medtr5g020780.2	hypothetical protein 	NA	NA	NA
PtpAffx.1092.2.A1_at	E	E	CV248692	CV248692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1092.4.A1_at	E	E	CV250470	CV250470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1096.1.A1_at	E	E	CV248392	CV248392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109666.1.S1_at	E	E	CV256257	CV256257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1099.4.A1_at	E	E	CV272037	CV272037	NA	NA	P49212	60S ribosomal protein L37 (Fragment)	AT1G15250.1	Zinc-binding ribosomal protein family protein 	LOC_Os02g56990.1	"ribosomal protein L37, putative, expressed"	Medtr4g009180.1	Ribosomal protein L37e; 	NA	NA	NA
PtpAffx.109941.1.A1_at	E	E	CK097370	CK097370	NA	NA	O23826	125 kDa kinesin-related protein	AT2G36200.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g44420.1	"kinesin-related protein, putative, expressed"	Medtr7g127790.1	"Kinesin, motor region "	NA	NA	NA
PtpAffx.10999.1.A1_at	E	E	CK090702	CK090702	NA	NA	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os02g18320.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr3g101870.1	Protein kinase 	NA	NA	NA
PtpAffx.110079.1.A1_at	E	E	CK092660	CK092660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110082.1.A1_at	E	E	CK092555	CK092555	NA	NA	Q05583	Cytosolic iron-sulfur protein assembly protein 1	AT5G50120.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g50740.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g125060.1	"transducin family protein, putative "	NA	NA	NA
PtpAffx.110092.1.A1_at	E	E	CK092148	CK092148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11013.1.A1_s_at	E	E	CV230200	CV230200	scaffold_12:3319016-3319282(-) (11)	NA	P42667	Signal peptidase complex catalytic subunit SEC11A	AT1G52600.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os05g23260.1	"OsSigP4 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed"	Medtr2g126230.2	"Peptidase S24, S26A and S26B "	NA	NA	NA
PtpAffx.110148.1.A1_at	E	E	CK089991	CK089991	NA	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	AC146568_1.3	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 3081-6078 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.110312.1.S1_at	E	E	CV278899	CV278899	NA	NA	NA	NA	AT5G61670.2	Encodes a close homolog of the Cauliflower OR (Orange) protein.  The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation.  Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons. 	LOC_Os02g43500.1	"OR, putative, expressed"	Medtr4g041160.1	"OR, putative "	NA	NA	NA
PtpAffx.11059.1.A1_at	E	E	CV282597	CV282597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110856.1.S1_at	E	E	DN492432	DN492432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11086.1.A1_at	E	E	CV280802	CV280802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1109.1.A1_at	E	E	CV247292	CV247292	NA	NA	B7IFE0	Chaperone protein dnaJ	AT5G03160.1	homolog of mamallian P58IPK 	LOC_Os02g10180.2	"dnaJ homolog subfamily C member, putative, expressed"	Medtr7g121340.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical; ; "	NA	NA	NA
PtpAffx.110996.1.S1_at	E	E	BU811034	BU811034	NA	NA	Q43793	"Glucose-6-phosphate 1-dehydrogenase, chloroplastic"	AT5G13110.1	glucose-6-phosphate dehydrogenase 2 	LOC_Os07g22350.1	"glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed"	Medtr7g022440.1	Glucose-6-phosphate dehydrogenase 	NA	NA	NA
PtpAffx.111.1.A1_at	E	E	CV265525	CV265525	NA	NA	Q9SJL9	Probable xyloglucan endotransglucosylase/hydrolase protein 32	AT2G36870.1	xyloglucan endotransglucosylase/hydrolase 32 	LOC_Os07g29750.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr2g113780.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	NA	NA	NA
PtpAffx.111014.1.S1_at	E	E	DN497885	DN497885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.111112.1.S1_at	E	E	DN501015	DN501015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.111279.1.S1_at	E	E	BU873760	BU873760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.111422.1.S1_at	E	E	BP922977	BP922977	NA	NA	NA	NA	NA	NA	LOC_Os04g47290.2	"amine oxidase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.111497.1.S1_at	E	E	CK087230	CK087230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.111592.1.A1_at	E	E	CV237070	CV237070	scaffold_17:1608949-1609351(-) (9)	NA	P52782	Glutamine synthetase nodule isozyme	AT1G66200.3	glutamine synthase clone F11 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	NA	NA	NA
PtpAffx.111592.2.S1_at	E	E	CV245241	CV245241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1116.1.A1_s_at	E	E	CV245705	CV245705	scaffold_5:21177605-21177838(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1118.1.A1_at	E	E	CV245515	CV245515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11186.1.S1_at	E	E	CV275721	CV275721	NA	NA	Q13435	Splicing factor 3B subunit 2	AT4G21660.1	proline-rich spliceosome-associated (PSP) family protein 	LOC_Os02g58090.1	"PSP domain containing protein, expressed"	Medtr2g015040.1	"PSP, proline-rich "	NA	NA	NA
PtpAffx.112057.1.S1_s_at	E	E	CV240582	CV240582	scaffold_5:3343636-3352470(-) (9)	NA	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os12g42980.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	NA	NA	NA
PtpAffx.112255.1.S1_at	E	E	BU836900	BU836900	scaffold_12:1004585-1005124(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112314.1.A1_at	E	E	DN492708	DN492708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112316.1.S1_at	E	E	DN502672	DN502672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112322.1.S1_a_at	E	E	CV248866	CV248866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112322.2.S1_at	E	E	DN502326	DN502326	NA	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	NA	NA	NA
PtpAffx.112410.1.S1_at	E	E	BU832894	BU832894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112411.1.S1_at	E	E	BU832734	BU832734	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g122410.1	Appr>p cyclic nucleotide phosphodiesterase 	NA	NA	NA
PtpAffx.112428.1.S1_at	E	E	BU887895	BU887895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112574.1.A1_at	E	E	DN492912	DN492912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112602.1.A1_at	E	E	DN491659	DN491659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112626.1.A1_at	E	E	DN490751	DN490751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112673.1.A1_at	E	E	DN488012	DN488012	NA	NA	P52855	60S acidic ribosomal protein P1	AT5G24510.1	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	NA	NA	NA
PtpAffx.112726.1.A1_at	E	E	DN485881	DN485881	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112727.1.A1_at	E	E	DN485830	DN485830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112733.1.A1_at	E	E	DN485522	DN485522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11275.2.A1_at	E	E	CV263673	CV263673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112750.1.A1_at	E	E	DN485044	DN485044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112757.1.A1_at	E	E	DN484687	DN484687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112771.1.A1_at	E	E	DN484299	DN484299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11283.1.A1_at	E	E	CV271885	CV271885	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g093950.1	hypothetical protein 	NA	NA	NA
PtpAffx.11331.2.S1_at	E	E	CK115901	CK115901	NA	NA	P59234	Protein yippee-like	AT2G40110.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g093410.1	Yippee-like protein 	NA	NA	NA
PtpAffx.1134.1.A1_at	E	E	CV244455	CV244455	NA	NA	P99029	"Peroxiredoxin-5, mitochondrial"	AT3G52960.1	Thioredoxin superfamily protein 	LOC_Os06g42000.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	NA	NA
PtpAffx.113975.1.A1_at	E	E	CV276384	CV276384	NA	NA	Q680P8	40S ribosomal protein S29	AT4G33865.1	Ribosomal protein S14p/S29e family protein 	LOC_Os11g41610.1	"40S ribosomal protein S29, putative"	Medtr5g005230.1	Ribosomal protein S14 	NA	NA	NA
PtpAffx.114.1.S1_at	E	E	CV267620	CV267620	scaffold_18:5529582-5530060(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11401.3.S1_at	E	E	CK097589	CK097589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114161.1.A1_at	E	E	CV269016	CV269016	scaffold_672:6801-7195(+) (9)//scaffold_8:374032-374426(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr2g042970.1	hypothetical protein 	NA	NA	NA
PtpAffx.114218.1.A1_at	E	E	CV266727	CV266727	NA	NA	NA	NA	AT1G02475.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os01g22510.1	"cyclase/dehydrase family protein, expressed"	Medtr1g106070.1	Streptomyces cyclase/dehydrase 	NA	NA	NA
PtpAffx.114453.1.A1_at	E	E	CV258120	CV258120	NA	NA	Q84P24	4-coumarate--CoA ligase-like 6	AT4G19010.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g05780.1	"4-coumarate--CoA ligase-like 7, putative, expressed"	Medtr5g027670.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.114621.1.A1_at	E	E	CV252117	CV252117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114708.1.A1_at	E	E	CV247145	CV247145	NA	NA	NA	NA	AT5G50290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 300 Blast hits to 300 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g33860.1	conserved hypothetical protein	NA	NA	NA	NA	NA
PtpAffx.114711.1.A1_at	E	E	CV246923	CV246923	NA	NA	Q3E7T8	Polyubiquitin 14	AT4G05050.4	ubiquitin 11 	LOC_Os04g53620.4	"ubiquitin family protein, putative, expressed"	Medtr8g021190.2	Ubiquitin 	NA	NA	NA
PtpAffx.11475.2.A1_at	E	E	CV231159	CV231159	NA	NA	O65781	UDP-glucose 4-epimerase GEPI48	AT1G64440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g51670.3	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g009210.2	UDP-glucose 4-epimerase 	NA	NA	NA
PtpAffx.114753.2.S1_at	E	E	CX171808	CX171808	NA	NA	NA	NA	AT3G52040.1	unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g16550.1	expressed protein	Medtr8g105920.1	hypothetical protein 	NA	NA	NA
PtpAffx.114768.1.A1_at	E	E	CV244565	CV244565	NA	NA	P58375	60S ribosomal protein L30	AT3G18740.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	NA	NA	NA
PtpAffx.114769.1.A1_at	E	E	CV244437	CV244437	scaffold_4:6515377-6515495(+) (11)//scaffold_4:6515563-6515682(+) (11)//scaffold_4:6515750-6515782(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114773.1.A1_at	E	E	CV244337	CV244337	scaffold_11:3649230-3649640(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114804.1.A1_at	E	E	CV243036	CV243036	NA	NA	P13060	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os02g32030.1	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	NA	NA
PtpAffx.114813.1.A1_at	E	E	CV242789	CV242789	NA	NA	P41094	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	NA	NA	NA
PtpAffx.114869.1.A1_at	E	E	CV241152	CV241152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114912.1.A1_at	E	E	CV239859	CV239859	scaffold_9:1728446-1728914(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114914.1.A1_at	E	E	CV239757	CV239757	scaffold_2:13515878-13516361(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114917.1.A1_at	E	E	CV239733	CV239733	NA	NA	A4GYR0	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g21250.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.114950.1.A1_at	E	E	CV238637	CV238637	scaffold_1667:4146-4656(+) (11)//scaffold_7:13747088-13747460(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114966.1.A1_at	E	E	CV238137	CV238137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11499.4.S1_at	E	E	CF232822	CF232822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.115.1.S1_at	E	E	DN485661	DN485661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.115066.1.A1_at	E	E	CV233912	CV233912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.115134.1.A1_at	E	E	CV231651	CV231651	scaffold_3:12650333-12650941(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.115176.2.A1_a_at	E	E	CV230257	CV230257	scaffold_10:8284781-8285344(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.115216.1.A1_at	E	E	CV228719	CV228719	NA	NA	Q9NVG8	TBC1 domain family member 13	AT4G13730.3	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g68010.1	"TBC domain containing protein, expressed"	Medtr4g133590.1	RabGAP/TBC 	NA	NA	NA
PtpAffx.115217.1.A1_at	E	E	CV228706	CV228706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.115251.1.A1_at	E	E	CV226623	CV226623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.115265.1.A1_at	E	E	CV226072	CV226072	NA	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os10g31950.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	NA	NA	NA
PtpAffx.115274.1.A1_at	E	E	CV225684	CV225684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11535.7.A1_at	E	E	CV232884	CV232884	NA	NA	Q9ZV51	RING-H2 finger protein ATL56	AT2G18670.1	RING/U-box superfamily protein 	LOC_Os08g43670.1	"RING-H2 finger protein ATL2B, putative, expressed"	Medtr8g127780.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.1154.2.S1_at	E	E	DN494889	DN494889	NA	NA	Q94B71	Protein OBERON 3	AT1G14740.1	Protein of unknown function (DUF1423) 	LOC_Os03g13590.1	"potyvirus VPg interacting protein, putative, expressed"	CU633465_5.1	Arabidopsis thaliana 130.7kDa hypothetical protein CU633465.7 34422-38324 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.11559.2.S1_at	E	E	CN523733	CN523733	scaffold_1:41856616-41856834(-) (10)	NA	NA	NA	AT2G31670.1	Stress responsive alpha-beta barrel domain protein 	LOC_Os07g41810.4	"stress responsive A/B Barrel domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.11563.1.A1_a_at	E	E	CV242325	CV242325	NA	NA	Q8RXG3	Mitogen-activated protein kinase kinase 5	AT3G21220.1	MAP kinase kinase 5 	LOC_Os06g09180.1	"OsMKK5 - putative MAPKK based on amino acid sequence homology, expressed"	Medtr4g023250.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.115676.1.S1_at	E	E	BU822363	BU822363	NA	NA	NA	NA	AT1G33980.2	Smg-4/UPF3 family protein 	LOC_Os04g35920.2	"nonsense-mediated decay UPF3, putative, expressed"	Medtr2g005430.1	"Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.11587.1.S1_at	E	E	CV260076	CV260076	scaffold_4:22514501-22514987(-) (9)	NA	Q9LTB2	Methionine S-methyltransferase	AT5G49810.1	methionine S-methyltransferase 	LOC_Os05g01470.2	"methionine S-methyltransferase, putative, expressed"	Medtr2g005050.1	Methyltransferase small; 	NA	NA	NA
PtpAffx.116143.2.S1_at	E	E	CV272855	CV272855	NA	NA	Q9XG83	Gibberellin 2-beta-dioxygenase	NA	NA	LOC_Os01g55240.1	"gibberellin 2-beta-dioxygenase, putative, expressed"	Medtr4g165740.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.116143.3.S1_at	E	E	CF229902	CF229902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116185.1.S1_at	E	E	CK112500	CK112500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116289.1.S1_at	E	E	CK107679	CK107679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116293.1.S1_at	E	E	CK107625	CK107625	NA	NA	Q9FQ08	ATP-dependent DNA helicase 2 subunit KU70	AT1G16970.1	KU70 homolog 	LOC_Os07g08729.1	"ATP-dependent DNA helicase 2 subunit 1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.116423.1.S1_at	E	E	BU811218	BU811218	scaffold_17:11742785-11743097(-) (9)	NA	NA	NA	AT5G39785.2	Protein of unknown function (DUF1666) 	LOC_Os09g24700.1	expressed protein	Medtr7g009560.1	Ribosomal protein L34e 	NA	NA	NA
PtpAffx.116442.1.S1_at	E	E	CV242503	CV242503	NA	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT3G19950.1	RING/U-box superfamily protein 	LOC_Os06g01200.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g143590.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.116717.1.A1_at	E	E	CK091056	CK091056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116723.1.A1_at	E	E	CK090911	CK090911	NA	NA	NA	NA	AT4G39700.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os09g20000.1	"heavy metal-associated domain containing protein, expressed"	Medtr4g140470.1	Heavy metal transport/detoxification protein 	NA	NA	NA
PtpAffx.116727.1.A1_at	E	E	CK090798	CK090798	NA	NA	NA	NA	AT3G08610.1	unknown protein; Has 40 Blast hits to 40 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g40300.2	expressed protein	Medtr8g005130.1	hypothetical protein 	NA	NA	NA
PtpAffx.116728.1.A1_at	E	E	CK090789	CK090789	NA	NA	O04630	"Threonyl-tRNA synthetase, mitochondrial"	AT5G26830.1	Threonyl-tRNA synthetase 	LOC_Os08g19850.1	"threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed"	Medtr5g035990.1	"tRNA synthetase, class II (G, H, P and S); Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	NA	NA	NA
PtpAffx.116734.1.A1_at	E	E	CK090678	CK090678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116746.1.A1_at	E	E	CK090360	CK090360	NA	NA	NA	NA	AT4G36490.1	SEC14-like 12 	LOC_Os10g03400.2	"phosphatidylinositol transfer, putative, expressed"	Medtr8g092800.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	NA	NA	NA
PtpAffx.116756.1.A1_at	E	E	CK089677	CK089677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116773.1.A1_at	E	E	CK088110	CK088110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11685.1.S1_at	E	E	CV256575	CV256575	scaffold_1:9318465-9319000(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1169.10.A1_at	E	E	CV282274	CV282274	NA	NA	P31853	"ATP synthase subunit b', chloroplastic"	AT4G32260.1	"ATPase, F0 complex, subunit B/B', bacterial/chloroplast "	LOC_Os03g17070.1	"ATP synthase B chain, chloroplast precursor, putative, expressed"	Medtr3g137480.1	"H+-transporting two-sector ATPase, B/B subunit "	NA	NA	NA
PtpAffx.11710.2.S1_at	E	E	DN490112	DN490112	NA	NA	P40229	Casein kinase II subunit beta'	AT4G17640.1	casein kinase II  beta chain 2 	LOC_Os10g41520.2	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.2	"Casein kinase II, regulatory subunit "	NA	NA	NA
PtpAffx.117412.1.S1_at	E	E	DN493156	DN493156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.117597.1.S1_at	E	E	DN488121	DN488121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11773.1.A1_at	E	E	CV253288	CV253288	scaffold_14:13300810-13301244(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11773.1.A1_s_at	E	E	CV253288	CV253288	scaffold_14:13300246-13300812(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.117740.1.S1_at	E	E	CK114125	CK114125	scaffold_8:2663959-2664488(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.117750.1.S1_at	E	E	DN491733	DN491733	scaffold_18:3535165-3535650(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11778.2.A1_a_at	E	E	CV254018	CV254018	scaffold_15:7399153-7404076(-) (11)	NA	Q9M9B4	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6	AT3G18410.2	Complex I subunit NDUFS6 	LOC_Os10g42540.1	expressed protein	Medtr6g028520.1	"NADH dehydrogenase iron-sulfur protein 6, putative "	NA	NA	NA
PtpAffx.11783.3.A1_at	E	E	CV252894	CV252894	NA	NA	B9DHD7	Vesicle-associated protein 2-2	AT1G08820.2	vamp/synaptobrevin-associated protein 27-2 	LOC_Os01g71050.1	"MSP domain containing protein, putative, expressed"	Medtr8g139690.1	Major sperm protein 	NA	NA	NA
PtpAffx.11802.2.S1_at	E	E	CV265681	CV265681	NA	NA	Q9M5L0	60S ribosomal protein L35	AT5G02610.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	NA	NA	NA
PtpAffx.118053.1.S1_at	E	E	DN499237	DN499237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118061.1.S1_at	E	E	DN499141	DN499141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118404.1.S1_at	E	E	BI138202	BI138202	scaffold_4:3153236-3153556(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118614.1.S1_a_at	E	E	AI164889	AI164889	scaffold_5:16223243-16224071(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11870.1.A1_at	E	E	CV249234	CV249234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118796.1.S1_at	E	E	CK093055	CK093055	NA	NA	NA	NA	AT4G19140.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51166.1	expressed protein	Medtr5g027030.1	hypothetical protein 	NA	NA	NA
PtpAffx.11884.1.A1_at	E	E	CV248556	CV248556	scaffold_1:19946373-19946850(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118866.1.S1_at	E	E	DN492839	DN492839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118955.1.S1_at	E	E	DN499467	DN499467	NA	NA	O22478	Importin subunit alpha	AT3G05720.1	importin alpha isoform 7 	LOC_Os01g14950.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	NA	NA	NA
PtpAffx.118991.1.S1_at	E	E	DN487924	DN487924	scaffold_17:7137190-7137580(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118999.1.S1_at	E	E	DN497310	DN497310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119107.1.A1_at	E	E	DN492840	DN492840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119155.1.A1_at	E	E	DN490680	DN490680	NA	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os01g04730.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	NA	NA	NA
PtpAffx.119163.1.A1_at	E	E	DN490214	DN490214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11917.1.A1_at	E	E	CV246931	CV246931	scaffold_1056:2193-2438(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11918.1.A1_at	E	E	CV246863	CV246863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119188.1.A1_at	E	E	DN488326	DN488326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119254.1.A1_at	E	E	DN485817	DN485817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119255.1.A1_at	E	E	DN485742	DN485742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11939.1.A1_at	E	E	CV246002	CV246002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11945.1.A1_at	E	E	CV245686	CV245686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119501.1.A1_at	E	E	BP930082	BP930082	NA	NA	NA	NA	AT2G27350.6	OTU-like cysteine protease family protein 	NA	NA	Medtr2g107500.1	"Ovarian tumour, otubain "	NA	NA	NA
PtpAffx.11973.1.A1_at	E	E	CV244811	CV244811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11991.1.S1_a_at	E	E	CV256950	CV256950	NA	NA	Q9M5W4	Histone H1	AT2G30620.2	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	NA	NA	NA	NA	NA
PtpAffx.11994.2.A1_at	E	E	DN499360	DN499360	scaffold_10:12298926-12299449(-) (11)	NA	NA	NA	AT1G14990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g42120.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.12007.1.A1_at	E	E	CV244003	CV244003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12022.1.A1_at	E	E	CV243348	CV243348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12027.1.A1_at	E	E	CV243273	CV243273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12030.1.S1_at	E	E	CV243111	CV243111	scaffold_13:12998769-12999273(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12032.1.A1_at	E	E	CV243048	CV243048	NA	NA	Q9Y5U8	Brain protein 44-like protein	AT5G20090.3	Uncharacterised protein family (UPF0041) 	LOC_Os09g20660.2	"UPF0041 domain containing protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.120544.1.A1_at	E	E	CV274850	CV274850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12055.1.A1_at	E	E	CV242259	CV242259	NA	NA	Q937L4	Cyclopentanol dehydrogenase	AT5G06060.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g70525.1	"tropinone reductase, putative"	Medtr3g021580.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.12064.1.A1_at	E	E	CV241935	CV241935	NA	NA	P41093	60S ribosomal protein L18a	AT1G29970.2	60S ribosomal protein L18A-1 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	NA	NA	NA
PtpAffx.12069.1.A1_at	E	E	CV241827	CV241827	NA	NA	Q2S929	30S ribosomal protein S5	AT1G64880.1	Ribosomal protein S5 family protein 	LOC_Os02g01230.2	"ribosomal protein, putative, expressed"	Medtr4g142760.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	NA	NA	NA
PtpAffx.12073.1.A1_at	E	E	CV241637	CV241637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12078.1.A1_at	E	E	CV241533	CV241533	NA	NA	NA	NA	AT1G72050.1	transcription factor IIIA 	NA	NA	Medtr8g043230.1	"Zinc finger, C2H2-type; "	NA	NA	NA
PtpAffx.1210.3.S1_at	E	E	CV272422	CV272422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1210.7.S1_at	E	E	BU882765	BU882765	NA	NA	NA	NA	AT5G38760.1	Late embryogenesis abundant protein (LEA) family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121028.1.A1_s_at	E	E	CV256566	CV256566	scaffold_4:4367474-4367859(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12108.1.S1_at	E	E	CV240450	CV240450	NA	NA	P50218	Isocitrate dehydrogenase [NADP]	AT1G65930.1	cytosolic NADP+-dependent isocitrate dehydrogenase 	LOC_Os01g46610.1	"dehydrogenase, putative, expressed"	Medtr5g084930.1	"Isocitrate dehydrogenase NADP-dependent, plant "	NA	NA	NA
PtpAffx.121134.1.A1_at	E	E	CV253130	CV253130	scaffold_10:6009361-6009887(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121199.1.A1_at	E	E	CV249863	CV249863	NA	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g098530.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.12120.1.A1_at	E	E	CV239903	CV239903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121209.1.A1_at	E	E	CV249080	CV249080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121291.1.A1_at	E	E	CV245140	CV245140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121308.1.A1_at	E	E	CV244686	CV244686	NA	NA	P55935	40S ribosomal protein S9	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	NA	NA
PtpAffx.121318.1.A1_at	E	E	CV244320	CV244320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121324.1.A1_at	E	E	CV244140	CV244140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121347.1.A1_at	E	E	CV243482	CV243482	NA	NA	Q9FUM8	Homocysteine S-methyltransferase 3	AT3G63250.1	homocysteine methyltransferase 2 	LOC_Os12g41390.1	"homocysteine S-methyltransferase protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.121351.1.A1_at	E	E	CV243424	CV243424	scaffold_1:46209536-46210046(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121353.1.A1_at	E	E	CV243315	CV243315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121363.1.A1_at	E	E	CV242874	CV242874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121365.1.A1_at	E	E	CV242840	CV242840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12137.1.A1_at	E	E	CV239261	CV239261	NA	NA	Q5G5C4	40S ribosomal protein S3a	AT4G34670.1	Ribosomal protein S3Ae 	LOC_Os03g10340.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	NA	NA	NA
PtpAffx.121399.2.A1_a_at	E	E	DN492201	DN492201	scaffold_17:5998085-6004331(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121414.1.A1_at	E	E	CV240824	CV240824	scaffold_4:18048382-18048807(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121424.1.A1_at	E	E	CV240398	CV240398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121473.1.A1_at	E	E	CV238631	CV238631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121518.1.A1_at	E	E	CV236726	CV236726	NA	NA	NA	NA	AT2G47010.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os05g19030.2	expressed protein	Medtr1g105900.1	hypothetical protein 	NA	NA	NA
PtpAffx.121541.1.A1_at	E	E	CV236055	CV236055	NA	NA	Q05349	Auxin-repressed 12.5 kDa protein	AT2G33830.2	Dormancy/auxin associated family protein 	LOC_Os11g44810.1	"auxin-repressed protein, putative, expressed"	Medtr2g017720.2	Dormancyauxin associated 	NA	NA	NA
PtpAffx.121553.1.A1_at	E	E	CV235684	CV235684	scaffold_1:38091450-38091755(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121674.1.A1_at	E	E	CV230944	CV230944	scaffold_2:5527841-5528177(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121678.1.A1_at	E	E	CV230850	CV230850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121684.1.A1_at	E	E	CV230582	CV230582	scaffold_3:81079-81436(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121746.1.A1_at	E	E	CV228531	CV228531	scaffold_17:5032131-5032340(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121750.1.A1_at	E	E	CV228405	CV228405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121762.1.A1_at	E	E	CV227904	CV227904	NA	NA	P22151	Glucose-repressible gene protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121786.1.A1_at	E	E	CV226461	CV226461	scaffold_1:2865549-2865974(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121794.1.A1_at	E	E	CV226049	CV226049	scaffold_2:22564320-22573805(+) (9)	NA	NA	NA	AT4G28760.2	Protein of unknown function (DUF3741) 	NA	NA	Medtr7g117880.1	hypothetical protein 	NA	NA	NA
PtpAffx.121917.1.S1_at	E	E	AJ779630	AJ779630	NA	NA	O80360	"50S ribosomal protein L3, chloroplastic (Fragment)"	AT2G43030.1	Ribosomal protein L3 family protein 	LOC_Os02g04460.1	"ribosomal protein L3, putative, expressed"	Medtr3g163790.1	Translation factor 	NA	NA	NA
PtpAffx.12206.2.S1_at	E	E	CV236154	CV236154	scaffold_17:14543536-14543779(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.122552.7.S1_at	E	E	CV244930	CV244930	NA	NA	Q54ZW0	Putative phagocytic receptor 1b	AT5G37310.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	NA
PtpAffx.1229.1.S1_at	E	E	AJ774251	AJ774251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.122905.1.S1_at	E	E	BU837645	BU837645	NA	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07240.1	UDP-glucosyl transferase 71C5 	LOC_Os07g32620.1	"anthocyanidin 5,3-O-glucosyltransferase, putative, expressed"	Medtr5g078570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
PtpAffx.122968.1.A1_at	E	E	CK097395	CK097395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123056.1.A1_at	E	E	CK094268	CK094268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123111.1.A1_at	E	E	CK091614	CK091614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123129.1.A1_at	E	E	CK091171	CK091171	NA	NA	Q9SMH2	Thaumatin-like protein 1	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g36580.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	NA	NA	NA
PtpAffx.123170.1.S1_at	E	E	CV236141	CV236141	scaffold_15:11679707-11683891(-) (10)	NA	Q9SMP0	Nuclear transcription factor Y subunit C-1	AT3G48590.1	"nuclear factor Y, subunit C1 "	LOC_Os03g14669.2	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr3g150580.3	Histone-fold/TFIID-TAF/NF-Y 	NA	NA	NA
PtpAffx.12324.1.S1_at	E	E	CV231614	CV231614	NA	NA	Q8GSA7	Calmodulin-binding transcription activator 3	AT2G22300.2	signal responsive 1 	LOC_Os10g22950.1	"calmodulin-binding transcription activator, putative, expressed"	Medtr2g008890.1	IQ calmodulin-binding region; CG-1 	NA	NA	NA
PtpAffx.123671.1.A1_at	E	E	CV261233	CV261233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123780.1.S1_at	E	E	CV247996	CV247996	NA	NA	NA	NA	AT1G67265.1	ROTUNDIFOLIA like 21 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12414.1.S1_at	E	E	CV228329	CV228329	scaffold_10:3565918-3566370(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr2g026400.1	hypothetical protein 	NA	NA	NA
PtpAffx.124176.2.S1_a_at	E	E	DN502183	DN502183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12424.1.A1_at	E	E	CV260307	CV260307	scaffold_16:1927844-1928925(-) (11)	NA	NA	NA	AT5G09225.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os11g04174.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.124363.1.S1_at	E	E	DN497142	DN497142	NA	NA	Q9LM76	U-box domain-containing protein 44	AT1G20780.1	senescence-associated E3 ubiquitin ligase 1 	LOC_Os12g17900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr8g029450.1	U box; Armadillo-like helical 	NA	NA	NA
PtpAffx.1245.3.A1_at	E	E	CV237048	CV237048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12475.1.A1_at	E	E	CV226208	CV226208	NA	NA	Q9MAV7	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr4g160530.1	Ribosomal protein L31e 	NA	NA	NA
PtpAffx.125301.1.S1_at	E	E	DN493211	DN493211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125308.1.S1_at	E	E	DN492942	DN492942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125379.1.S1_at	E	E	DN500450	DN500450	NA	NA	NA	NA	AT4G07990.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g51830.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.125500.1.S1_at	E	E	DN486147	DN486147	NA	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT4G00710.1	BR-signaling kinase 3 	LOC_Os10g42110.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	NA	NA	NA
PtpAffx.125504.1.A1_at	E	E	DN485856	DN485856	NA	NA	P53693	Protein rds1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125574.1.A1_at	E	E	DN491995	DN491995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125584.1.A1_at	E	E	DN491582	DN491582	scaffold_1:38313164-38313535(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12564.1.A1_s_at	E	E	CV245340	CV245340	NA	NA	A4GYP8	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	LOC_Os04g16830.1	"DNA-directed RNA polymerase subunit beta, putative"	Medtr4g042160.1	"RNA polymerase Rpb1, domain 5 "	NA	NA	NA
PtpAffx.125748.1.A1_at	E	E	DN484333	DN484333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125749.1.A1_at	E	E	DN484235	DN484235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1258.3.A1_at	E	E	CV267030	CV267030	NA	NA	Q29EY2	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT1G12600.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os03g02670.3	"transporter family protein, putative, expressed"	Medtr7g083930.3	UAA transporter 	NA	NA	NA
PtpAffx.126575.1.S1_at	E	E	CF227372	CF227372	NA	NA	NA	NA	AT3G07565.1	Protein of unknown function (DUF3755) 	LOC_Os05g24000.2	expressed protein	Medtr3g025420.1	hypothetical protein 	NA	NA	NA
PtpAffx.1268.1.A1_at	E	E	CK097780	CK097780	scaffold_2:4575192-4575728(+) (11)	NA	P42777	G-box-binding factor 4	AT5G44080.1	Basic-leucine zipper (bZIP) transcription factor family protein 	NA	NA	Medtr1g125010.1	"bZIP transcription factor, bZIP_1 "	NA	NA	NA
PtpAffx.12682.1.S1_s_at	E	E	CV241163	CV241163	scaffold_14:12054830-12054976(+) (11)//scaffold_2:18814644-18814781(-) (11)	NA	Q99729	Heterogeneous nuclear ribonucleoprotein A/B	AT3G07810.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr2g030270.1	"Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.12682.2.S1_s_at	E	E	CV230518	CV230518	scaffold_14:12054594-12055075(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.126940.1.A1_at	E	E	CV240417	CV240417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.126970.2.S1_at	E	E	CV273237	CV273237	NA	NA	Q9M9L0	Anaphase-promoting complex subunit 11	AT3G05870.2	anaphase-promoting complex/cyclosome 11 	LOC_Os07g22840.1	"anaphase-promoting complex subunit 11, putative"	Medtr4g021940.1	"Anaphase-promoting complex subunit 11, putative "	NA	NA	NA
PtpAffx.127.1.S1_at	E	E	CA930597	CA930597	scaffold_8:16859597-16867692(-) (10)	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT4G15920.1	Nodulin MtN3 family protein 	LOC_Os03g22200.1	"nodulin MtN3 family protein, putative, expressed"	Medtr3g109190.1	MtN3 and saliva related transmembrane protein 	NA	NA	NA
PtpAffx.127060.2.A1_at	E	E	CV243477	CV243477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127123.1.A1_at	E	E	CV270989	CV270989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1272.1.A1_at	E	E	CV235210	CV235210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12738.1.S1_at	E	E	CV266359	CV266359	NA	NA	P54120	Protein AIG1	AT1G33970.5	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g35130.2	"AIG1, putative, expressed"	Medtr4g033020.1	AIG1 	NA	NA	NA
PtpAffx.12745.1.A1_at	E	E	CV235156	CV235156	scaffold_14:72866-73577(-) (10)	NA	NA	NA	AT1G16720.1	high chlorophyll fluorescence phenotype 173 	LOC_Os06g49120.1	"Complex I intermediate-associated protein 30 domain containing protein, putative, expressed"	Medtr4g163250.1	NAD-dependent epimerase/dehydratase 	NA	NA	NA
PtpAffx.127509.1.A1_at	E	E	CV255529	CV255529	NA	NA	Q8LPK4	AP-2 complex subunit alpha-2	AT5G22770.2	alpha-adaptin 	LOC_Os03g02150.2	"adapitin protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.127598.1.A1_at	E	E	CV252310	CV252310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127628.1.A1_at	E	E	CV250330	CV250330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127631.1.A1_at	E	E	CV250993	CV250993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127647.1.A1_at	E	E	CV250206	CV250206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127726.1.A1_at	E	E	CV246591	CV246591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127739.1.A1_at	E	E	CV245875	CV245875	scaffold_10:16324578-16325032(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127755.1.A1_at	E	E	BU832234	BU832234	NA	NA	NA	NA	AT4G34290.1	SWIB/MDM2 domain superfamily protein 	LOC_Os12g32280.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	NA	NA	NA
PtpAffx.127782.1.A1_at	E	E	CV245852	CV245852	NA	NA	P50882	60S ribosomal protein L9	AT1G33140.1	Ribosomal protein L6 family 	LOC_Os09g31180.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	NA	NA	NA
PtpAffx.127783.1.A1_at	E	E	CV244259	CV244259	scaffold_1:34074012-34074480(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127815.1.A1_at	E	E	CV242883	CV242883	scaffold_5:21427401-21427790(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g30840.1	"retrotransposon protein, putative, unclassified"	AC229695_21.1	"RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl transferase, Ribonuclease H fold AC229695.5 96798-94993 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.127825.1.A1_at	E	E	CV242559	CV242559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127826.1.A1_at	E	E	CV242551	CV242551	NA	NA	P18053	Proteasome subunit alpha type-4	AT3G22110.1	20S proteasome alpha subunit C1 	LOC_Os06g07978.1	"peptidase, T1 family, putative"	Medtr7g076140.1	Proteasome alpha-subunit 	NA	NA	NA
PtpAffx.127836.1.A1_at	E	E	CV242371	CV242371	NA	NA	Q5U3U0	Phytanoyl-CoA dioxygenase domain-containing protein 1	AT2G01490.1	phytanoyl-CoA dioxygenase (PhyH) family protein 	LOC_Os05g39650.1	"phytanoyl-CoA dioxygenase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.127890.1.A1_at	E	E	CV243402	CV243402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127916.1.A1_at	E	E	CV239786	CV239786	NA	NA	Q5R8K6	60S ribosomal protein L35a	AT1G74270.1	Ribosomal protein L35Ae family protein 	LOC_Os05g48310.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	NA	NA	NA
PtpAffx.127927.1.A1_at	E	E	CV239423	CV239423	NA	NA	O01666	"ATP synthase subunit gamma, mitochondrial"	AT2G33040.1	gamma subunit of Mt ATP synthase 	LOC_Os10g17280.1	"ATP synthase gamma chain, putative, expressed"	Medtr3g068860.1	"H+-transporting two-sector ATPase, gamma subunit "	NA	NA	NA
PtpAffx.127949.1.A1_at	E	E	CV238298	CV238298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127951.1.A1_at	E	E	CV238080	CV238080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127982.2.A1_a_at	E	E	CV253055	CV253055	scaffold_6:19226219-19227435(+) (11)	NA	NA	NA	AT4G30993.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os06g08470.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.127990.1.A1_at	E	E	CV236342	CV236342	NA	NA	Q42112	60S acidic ribosomal protein P0-2	AT3G09200.1	Ribosomal protein L10 family protein 	LOC_Os08g03640.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr3g135890.1	Ribosomal protein L10; Ribosomal protein 60S 	NA	NA	NA
PtpAffx.128000.1.A1_at	E	E	CV235673	CV235673	scaffold_4:19742158-19742235(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.128113.1.A1_at	E	E	CV230743	CV230743	scaffold_12:4410439-4410550(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.128188.1.A1_at	E	E	CV227981	CV227981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.128192.1.A1_at	E	E	CV227873	CV227873	scaffold_2:9001332-9001673(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.128228.1.A1_at	E	E	CV226228	CV226228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12845.1.S1_at	E	E	CV240601	CV240601	NA	NA	Q10KY3	Calcium/calmodulin-dependent serine/threonine-protein kinase 1	AT2G46700.1	CDPK-related kinase 3 	LOC_Os06g50030.1	"CAMK_CAMK_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr7g145870.1	Protein kinase; Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.128489.1.S1_s_at	E	E	AJ774269	AJ774269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1286.7.S1_at	E	E	CV238819	CV238819	NA	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT3G25570.2	Adenosylmethionine decarboxylase family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.128768.1.A1_s_at	E	E	CV256717	CV256717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.128798.2.S1_at	E	E	DN491449	DN491449	NA	NA	NA	NA	AT5G41080.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.2	Glycerophosphoryl diester phosphodiesterase 	NA	NA	NA
PtpAffx.129041.1.S1_at	E	E	DN492994	DN492994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129161.1.S1_at	E	E	CK107723	CK107723	scaffold_9:2019636-2021426(+) (11)	NA	NA	NA	AT5G60710.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os04g42980.1	"zinc finger family protein, putative, expressed"	Medtr1g120670.1	"Zinc finger, RING-type; von Willebrand factor, type A "	NA	NA	NA
PtpAffx.129218.2.S1_a_at	E	E	BU820642	BU820642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129245.1.S1_at	E	E	AJ769062	AJ769062	NA	NA	Q9FKP0	"50S ribosomal protein 6, chloroplastic"	AT5G17870.1	plastid-specific 50S ribosomal protein 6 	LOC_Os11g34940.1	"plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed"	Medtr3g127970.1	"Plastid-specific 50S ribosomal protein 6, chloroplast precursor, related "	NA	NA	NA
PtpAffx.129348.1.S1_at	E	E	CK090482	CK090482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12950.2.A1_at	E	E	DN490450	DN490450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129505.1.A1_at	E	E	CK092110	CK092110	NA	NA	NA	NA	NA	NA	LOC_Os08g44540.1	expressed protein	Medtr7g087350.1	hypothetical protein 	NA	NA	NA
PtpAffx.129520.1.A1_at	E	E	CK091563	CK091563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129533.1.A1_at	E	E	CV232892	CV232892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129582.1.A1_at	E	E	CK088769	CK088769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129585.1.A1_at	E	E	CK088560	CK088560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.130516.2.S1_at	E	E	CV242212	CV242212	NA	NA	O64635	Cytochrome P450 76C4	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os09g08920.1	"cytochrome P450, putative, expressed"	Medtr8g042590.1	Cytochrome P450 	NA	NA	NA
PtpAffx.130551.1.S1_at	E	E	DN501005	DN501005	NA	NA	Q9FXE5	Alpha-L-fucosidase 3	AT1G67830.1	alpha-fucosidase 1 	LOC_Os07g39750.2	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	NA	NA	NA
PtpAffx.13062.3.S1_at	E	E	CX181858	CX181858	NA	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr8g120510.1	Cyclin-like F-box 	NA	NA	NA
PtpAffx.130908.1.A1_at	E	E	CV268079	CV268079	scaffold_8:10019502-10019938(-) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr1g132770.1	Blue (type 1) copper domain 	NA	NA	NA
PtpAffx.130937.1.S1_at	E	E	DN499313	DN499313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131101.1.S1_at	E	E	CK096858	CK096858	NA	NA	NA	NA	AT2G38430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131239.1.A1_at	E	E	DN485733	DN485733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131473.1.S1_at	E	E	BU886151	BU886151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1315.4.S1_at	E	E	AJ773581	AJ773581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13164.1.A1_at	E	E	CK091962	CK091962	NA	NA	Q9LIS3	UDP-glucuronate 4-epimerase 6	AT3G23820.1	UDP-D-glucuronate 4-epimerase 6 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr5g012090.1	NAD-dependent epimerase/dehydratase 	NA	NA	NA
PtpAffx.1317.3.A1_at	E	E	CV228532	CV228532	NA	NA	Q41542	Probable xyloglucan endotransglucosylase/hydrolase	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099560.2	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	NA	NA	NA
PtpAffx.131737.1.S1_at	E	E	BU894020	BU894020	NA	NA	NA	NA	AT1G08340.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	NA	NA	NA
PtpAffx.131794.1.S1_at	E	E	CK114147	CK114147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131807.1.S1_at	E	E	BU885491	BU885491	scaffold_2:4732169-4732611(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131883.1.S1_at	E	E	AJ769568	AJ769568	NA	NA	Q9FLX9	Notchless protein homolog	AT5G52820.1	"WD-40 repeat family protein / notchless protein, putative "	LOC_Os11g38170.2	"notchless protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.131974.1.S1_at	E	E	DN495552	DN495552	NA	NA	A4GYR7	"ATP synthase subunit beta, chloroplastic"	ATCG00480.1	ATP synthase subunit beta 	LOC_Os10g21266.1	"ATP synthase subunit beta, putative"	Medtr3g169420.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, delta/epsilon subunit "	NA	NA	NA
PtpAffx.132050.1.A1_at	E	E	DN492221	DN492221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132078.1.A1_at	E	E	DN491459	DN491459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132109.1.A1_at	E	E	DN490426	DN490426	NA	NA	Q94KE0	Sugar transporter ERD6-like 3	AT1G08920.3	ERD (early response to dehydration) six-like 1 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr7g139760.2	Sugar transporter superfamily 	NA	NA	NA
PtpAffx.132126.1.A1_at	E	E	DN489522	DN489522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13217.1.S1_at	E	E	CK320792	CK320792	NA	NA	Q9M3B0	Probable pectinesterase/pectinesterase inhibitor 34	AT3G49220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os02g18650.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	NA	NA	NA
PtpAffx.132211.1.A1_at	E	E	DN485937	DN485937	NA	NA	P16387	"Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial"	AT1G24180.1	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein 	LOC_Os02g50620.1	"dehydrogenase E1 component domain containing protein, expressed"	Medtr5g037700.1	"Dehydrogenase, E1 component "	NA	NA	NA
PtpAffx.1324.1.A1_at	E	E	CV231199	CV231199	NA	NA	P0C582	Putative mitochondrial 2-oxoglutarate/malate carrier protein	AT5G19760.1	Mitochondrial substrate carrier family protein 	LOC_Os05g11780.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g134510.1	Mitochondrial substrate carrier 	NA	NA	NA
PtpAffx.132859.1.S1_at	E	E	BU871420	BU871420	NA	NA	Q43714	(+)-delta-cadinene synthase isozyme A	AT5G23960.1	terpene synthase 21 	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	NA	NA	NA
PtpAffx.133368.1.A1_at	E	E	CV280032	CV280032	NA	NA	O50046	"Tryptophan synthase beta chain 2, chloroplastic"	AT5G28237.1	Pyridoxal-5'-phosphate-dependent enzyme family protein 	LOC_Os08g04180.1	"tryptophan synthase beta chain 1, putative, expressed"	Medtr5g005850.1	"Tryptophan synthase, beta chain and related "	NA	NA	NA
PtpAffx.133380.1.A1_at	E	E	CV279395	CV279395	scaffold_3:15821657-15822183(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133398.1.A1_at	E	E	CV278665	CV278665	NA	NA	NA	NA	AT5G17170.1	rubredoxin family protein 	LOC_Os08g06530.1	"rubredoxin family protein, putative, expressed"	Medtr5g008150.1	PDZ/DHR/GLGF; Rubredoxin-type Fe(Cys)4 protein 	NA	NA	NA
PtpAffx.133664.2.A1_a_at	E	E	CV267655	CV267655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133665.1.A1_at	E	E	CV267644	CV267644	NA	NA	Q8GXL3	Squamosa promoter-binding-like protein 8	AT1G02065.1	squamosa promoter binding protein-like 8 	NA	NA	Medtr8g005760.1	SBP 	NA	NA	NA
PtpAffx.133666.1.A1_at	E	E	CV267569	CV267569	NA	NA	Q8W487	"Uncharacterized protein At2g39795, mitochondrial"	AT3G55605.1	Mitochondrial glycoprotein family protein 	LOC_Os01g05010.1	"mitochondrial glycoprotein, putative, expressed"	Medtr5g088110.1	Mitochondrial glycoprotein 	NA	NA	NA
PtpAffx.133810.1.A1_at	E	E	CV261328	CV261328	NA	NA	NA	NA	AT3G03070.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os08g06430.1	"mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed"	Medtr4g107210.1	"mitochondrial NADH-ubiquinone oxidoreductase, putative "	NA	NA	NA
PtpAffx.133821.1.A1_at	E	E	CV260808	CV260808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133834.1.A1_at	E	E	CV243421	CV243421	scaffold_5:17068392-17069205(+) (11)	NA	Q9QXE7	F-box-like/WD repeat-containing protein TBL1X	AT5G67320.1	WD-40 repeat family protein 	LOC_Os07g22220.1	"F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed"	Medtr5g016360.1	Lissencephaly type-1-like homology motif; WD40-like 	NA	NA	NA
PtpAffx.134163.1.A1_at	E	E	CV245681	CV245681	NA	NA	Q24133	DnaJ protein homolog 1	AT3G08910.1	DNAJ heat shock family protein 	LOC_Os05g03630.1	"dnaJ domain containing protein, expressed"	AC235756_5.1	Heat shock protein DnaJ AC235756.1 49207-45302 F EGN_Mt090430 200	NA	NA	NA
PtpAffx.134166.1.A1_at	E	E	CV245549	CV245549	NA	NA	P53777	Muscle LIM protein 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134218.1.A1_at	E	E	CV244636	CV244636	scaffold_8:4338899-4339444(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134242.1.A1_at	E	E	CV242753	CV242753	NA	NA	A3AF13	Ubiquitin carboxyl-terminal hydrolase 26	AT3G49600.1	ubiquitin-specific protease 26 	LOC_Os03g09260.1	"ubiquitin carboxyl-terminal hydrolase 26, putative, expressed"	Medtr3g133630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1 "	NA	NA	NA
PtpAffx.134275.1.A1_at	E	E	CV241200	CV241200	NA	NA	O43715	TP53-regulated inhibitor of apoptosis 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134281.1.A1_at	E	E	CV240902	CV240902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134289.1.A1_at	E	E	CV240617	CV240617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134303.1.A1_at	E	E	CV240224	CV240224	NA	NA	NA	NA	AT5G09580.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53345.1); Has 53 Blast hits to 53 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os11g06670.1	expressed protein	Medtr4g121710.1	hypothetical protein 	NA	NA	NA
PtpAffx.134324.1.A1_at	E	E	CV239440	CV239440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134332.1.A1_at	E	E	CV239207	CV239207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134335.1.A1_at	E	E	CV239144	CV239144	NA	NA	Q6XUZ5	Isocitrate dehydrogenase [NADP] cytoplasmic	AT1G54340.1	isocitrate dehydrogenase 	LOC_Os05g49760.1	"dehydrogenase, putative, expressed"	Medtr2g080710.1	"Isocitrate dehydrogenase NADP-dependent, plant "	NA	NA	NA
PtpAffx.134337.1.A1_at	E	E	CV245057	CV245057	NA	NA	P09491	Tropomyosin-2	NA	NA	NA	NA	Medtr5g086190.1	Frigida-like 	NA	NA	NA
PtpAffx.134354.1.A1_at	E	E	CV238207	CV238207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134365.1.A1_at	E	E	CV237846	CV237846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134398.1.A1_at	E	E	CV236760	CV236760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134413.1.A1_at	E	E	CV236018	CV236018	scaffold_10:8163112-8163210(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134434.1.A1_at	E	E	CV235471	CV235471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134440.1.A1_at	E	E	CV235315	CV235315	NA	NA	NA	NA	AT3G06310.3	Cox19-like CHCH family protein 	LOC_Os03g18420.1	"CHCH domain containing protein, expressed"	AC233070_20.1	CHCH AC233070.4 91111-95201 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.134478.1.A1_at	E	E	CV234303	CV234303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134574.1.A1_at	E	E	CV230588	CV230588	scaffold_10:19650392-19650642(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134601.1.A1_at	E	E	CV229617	CV229617	scaffold_15:12470912-12471242(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134623.1.A1_at	E	E	CV228876	CV228876	scaffold_10:8641772-8642003(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135369.1.S1_at	E	E	DN492324	DN492324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135516.1.S1_at	E	E	DN491483	DN491483	scaffold_7:13004362-13004909(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1356.1.A1_s_at	E	E	CV284003	CV284003	NA	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT3G25230.2	rotamase FKBP 1 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	NA	NA	NA
PtpAffx.135690.1.S1_at	E	E	CK105850	CK105850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135947.1.A1_at	E	E	CK095601	CK095601	NA	NA	NA	NA	AT5G20885.1	RING/U-box superfamily protein 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g010210.1	"Zinc finger, RING-type; RINGv "	NA	NA	NA
PtpAffx.136079.1.A1_at	E	E	CK089829	CK089829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136083.1.A1_at	E	E	CK089643	CK089643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136186.1.S1_at	E	E	CF236541	CF236541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136820.1.S1_at	E	E	CV275296	CV275296	NA	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT1G71010.1	FORMS APLOID AND BINUCLEATE CELLS 1C 	LOC_Os08g33200.1	"1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed"	Medtr8g133260.1	Phosphatidylinositol-4-phosphate 5-kinase 	NA	NA	NA
PtpAffx.136977.1.S1_at	E	E	CV264492	CV264492	NA	NA	Q9LK09	Syntaxin-32	AT3G24350.1	syntaxin of plants  32 	LOC_Os01g08400.1	"syntaxin, putative, expressed"	Medtr3g136000.1	Syntaxin/epimorphin family 	NA	NA	NA
PtpAffx.137003.1.A1_at	E	E	DN488446	DN488446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13739.1.S1_at	E	E	CK104141	CK104141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.137443.1.S1_at	E	E	AI163014	AI163014	NA	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.13747.1.A1_at	E	E	CK093928	CK093928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.137473.1.S1_at	E	E	BU833909	BU833909	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13764.1.A1_at	E	E	CK092626	CK092626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.137665.1.S1_at	E	E	CV266647	CV266647	NA	NA	Q9ZS51	Peroxisomal membrane protein PMP22	AT4G04470.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os08g45210.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr1g090150.2	Mpv17/PMP22 	NA	NA	NA
PtpAffx.137797.1.S1_at	E	E	DN500862	DN500862	scaffold_2:7898143-7898583(-) (10)	NA	NA	NA	AT5G49665.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os04g01160.1	"zinc finger family protein, putative, expressed"	Medtr3g127640.1	"Zinc finger, RING-type; von Willebrand factor, type A; Immunoglobulin/major histocompatibility complex "	NA	NA	NA
PtpAffx.137810.1.S1_at	E	E	DN500748	DN500748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13782.1.A1_at	E	E	DN487131	DN487131	NA	NA	Q9M8R7	Probable protein phosphatase 2C 33	AT3G02750.3	Protein phosphatase 2C family protein 	LOC_Os07g37890.1	"protein phosphatase 2C, putative, expressed"	Medtr7g089830.1	Protein phosphatase 2C-like; 	NA	NA	NA
PtpAffx.13796.1.A1_at	E	E	CK091274	CK091274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138153.1.S1_at	E	E	BU866762	BU866762	NA	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	NA	NA	NA
PtpAffx.13819.1.A1_at	E	E	CK090623	CK090623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138330.1.S1_at	E	E	DN492154	DN492154	scaffold_12:2969414-2969905(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138567.1.A1_at	E	E	DN492742	DN492742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138581.1.A1_at	E	E	DN492072	DN492072	NA	NA	NA	NA	AT1G29050.1	TRICHOME BIREFRINGENCE-LIKE 38 	LOC_Os06g34060.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g064330.1	"Protein of unknown function DUF231, plant "	NA	NA	NA
PtpAffx.138582.1.A1_at	E	E	DN492071	DN492071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138599.1.A1_at	E	E	DN491587	DN491587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138612.1.A1_at	E	E	DN491173	DN491173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138634.1.A1_at	E	E	DN489770	DN489770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13865.1.S1_a_at	E	E	CK098427	CK098427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138654.1.A1_at	E	E	DN488759	DN488759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138732.1.A1_at	E	E	DN485578	DN485578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138733.1.S1_at	E	E	DN495047	DN495047	NA	NA	P20681	Cytochrome c oxidase subunit 1	ATMG01360.1	cytochrome  oxidase 	LOC_Os12g33946.1	"cytochrome c oxidase subunit 1, putative"	Medtr1g006730.1	"Cytochrome c oxidase, subunit I "	NA	NA	NA
PtpAffx.138867.1.A1_at	E	E	BP929850	BP929850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.139172.1.S1_at	E	E	BP922379	BP922379	NA	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT2G43680.3	IQ-domain 14 	NA	NA	Medtr4g128420.1	IQ calmodulin-binding region 	NA	NA	NA
PtpAffx.1398.5.S1_a_at	E	E	CF232540	CF232540	scaffold_11:17035426-17035505(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140014.1.A1_at	E	E	CV276051	CV276051	NA	NA	O48650	Protein translation factor SUI1 homolog	AT4G27130.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.2	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	NA	NA	NA
PtpAffx.140097.2.A1_at	E	E	CV228394	CV228394	NA	NA	Q9SA96	"Arogenate dehydratase/prephenate dehydratase 1, chloroplastic"	AT1G11790.1	arogenate dehydratase 1 	LOC_Os03g17730.1	"P-protein, putative, expressed"	Medtr2g104320.3	Prephenate dehydratase with ACT region 	NA	NA	NA
PtpAffx.14014.3.A1_at	E	E	CV242356	CV242356	scaffold_8:16230803-16231103(-) (10)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G13160.1	Protein kinase superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1405.3.S1_at	E	E	AJ777256	AJ777256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1406.1.A1_at	E	E	CV225848	CV225848	NA	NA	Q93Z04	Probable pectate lyase 13	AT3G54920.1	Pectin lyase-like superfamily protein 	LOC_Os10g31910.1	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	NA	NA	NA
PtpAffx.140685.1.A1_at	E	E	CV248604	CV248604	NA	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT2G21130.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	NA	NA
PtpAffx.140747.1.A1_at	E	E	CV246470	CV246470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140766.1.A1_at	E	E	CV245690	CV245690	NA	NA	Q9VAL0	Signal peptidase complex subunit 1	AT2G22425.2	Microsomal signal peptidase 12 kDa subunit (SPC12) 	NA	NA	Medtr3g103650.1	"Microsomal signal peptidase 12 kDa subunit; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.140768.1.A1_at	E	E	CV245646	CV245646	scaffold_7:5302704-5303150(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140770.1.A1_at	E	E	CV245572	CV245572	scaffold_3:12508623-12509065(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140786.1.A1_at	E	E	CV244971	CV244971	NA	NA	P17704	40S ribosomal protein S17	AT2G05220.2	Ribosomal S17 family protein 	LOC_Os10g27190.1	"40S ribosomal protein S17, putative, expressed"	AC146550_9.1	Ribosomal protein S17e AC146550.40 33438-32707 F EGN_Mt090430 200	NA	NA	NA
PtpAffx.140826.1.A1_at	E	E	CV243709	CV243709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140831.1.A1_at	E	E	CV243589	CV243589	NA	NA	P62925	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os07g02210.2	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	NA	NA	NA
PtpAffx.140890.1.A1_at	E	E	CV240786	CV240786	NA	NA	P39018	40S ribosomal protein S19a	AT3G02080.1	Ribosomal protein S19e family protein 	LOC_Os03g31134.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g005130.1	Ribosomal protein S19e 	NA	NA	NA
PtpAffx.140892.1.A1_at	E	E	CV241251	CV241251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140892.2.A1_a_at	E	E	CV241766	CV241766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140894.1.A1_at	E	E	CV244946	CV244946	scaffold_1:760620-762173(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140908.1.A1_at	E	E	CV243877	CV243877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140927.1.A1_at	E	E	CV239683	CV239683	scaffold_15:10774709-10775275(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140934.1.A1_at	E	E	CV239413	CV239413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141.2.S1_at	E	E	DN493233	DN493233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141004.1.A1_at	E	E	CV236761	CV236761	scaffold_16:5500336-5500810(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141014.1.A1_at	E	E	CV238124	CV238124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141058.1.A1_at	E	E	CV234265	CV234265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141060.1.A1_at	E	E	CV234204	CV234204	scaffold_5:25760445-25760977(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141078.1.A1_at	E	E	CV233027	CV233027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141100.1.A1_at	E	E	CV232129	CV232129	scaffold_1:14836345-14836615(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141105.1.A1_at	E	E	CV232011	CV232011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141112.1.A1_at	E	E	CV225663	CV225663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141163.1.A1_at	E	E	CV229690	CV229690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141173.1.A1_at	E	E	CV229185	CV229185	scaffold_15:12623931-12624158(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141177.1.A1_at	E	E	CV229097	CV229097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141218.1.A1_at	E	E	CV229870	CV229870	scaffold_4:7235725-7236154(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141635.1.S1_s_at	E	E	DN495398	DN495398	NA	NA	Q3KR56	GRAM domain-containing protein 1A	AT1G02120.1	GRAM domain family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141654.1.S1_at	E	E	AJ768599	AJ768599	NA	NA	P46256	"Fructose-bisphosphate aldolase, cytoplasmic isozyme 1"	AT4G26530.2	Aldolase superfamily protein 	LOC_Os06g40640.3	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g104310.2	"Fructose-bisphosphate aldolase, class-I "	NA	NA	NA
PtpAffx.141856.1.S1_at	E	E	AJ767292	AJ767292	NA	NA	Q9SL05	"Protein PROTON GRADIENT REGULATION 5, chloroplastic"	AT2G05620.1	proton gradient regulation 5 	LOC_Os08g45190.1	"PGR5, putative, expressed"	Medtr1g065260.1	"Protein PROTON GRADIENT REGULATION 5, chloroplast precursor, putative "	NA	NA	NA
PtpAffx.1420.7.S1_a_at	E	E	CV253185	CV253185	scaffold_2:736589-738996(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142115.1.A1_at	E	E	DN492302	DN492302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142291.1.S1_at	E	E	CK104094	CK104094	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g034520.1	Protein kinase; 	NA	NA	NA
PtpAffx.142301.1.S1_at	E	E	CK103416	CK103416	NA	NA	Q9SS48	"Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial"	AT3G10370.1	FAD-dependent oxidoreductase family protein 	LOC_Os04g14790.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr1g068510.1	FAD-dependent glycerol-3-phosphate dehydrogenase 	NA	NA	NA
PtpAffx.142322.1.A1_at	E	E	CV243696	CV243696	scaffold_10:19042235-19042679(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142395.2.S1_at	E	E	BU885294	BU885294	NA	NA	Q93Y35	Probable 26S proteasome non-ATPase regulatory subunit 6	AT4G24820.2	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os04g40850.1	"26S proteasome non-ATPase regulatory subunit 6, putative, expressed"	Medtr8g109840.1	Proteasome component region PCI 	NA	NA	NA
PtpAffx.14240.2.S1_a_at	E	E	CV242247	CV242247	NA	NA	P93306	NADH-ubiquinone oxidoreductase 49 kDa subunit	ATMG00510.1	NADH dehydrogenase subunit 7 	LOC_Os12g33958.1	"NADH-ubiquinone oxidoreductase 49 kDa subunit, putative"	NA	NA	NA	NA	NA
PtpAffx.142471.1.A1_s_at	E	E	CK095710	CK095710	scaffold_6:21502527-21502945(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142528.1.A1_at	E	E	CK093409	CK093409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142580.1.A1_at	E	E	CK090986	CK090986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142591.1.A1_at	E	E	CK090676	CK090676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142632.1.A1_at	E	E	CK087808	CK087808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142955.1.S1_at	E	E	CN521359	CN521359	NA	NA	P80470	"Photosystem II core complex proteins psbY, chloroplastic"	AT1G67740.1	photosystem II BY 	LOC_Os08g02630.1	"photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed"	Medtr3g102830.1	"Photosystem II core complex proteins psbY, chloroplast precursor, putative "	NA	NA	NA
PtpAffx.1431.1.S1_at	E	E	CV257677	CV257677	scaffold_2:9199420-9199936(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT5G67300.1	myb domain protein r1 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr5g016440.1	Homeodomain-related; 	NA	NA	NA
PtpAffx.143354.1.S1_at	E	E	BU893073	BU893073	NA	NA	Q69L19	Probable xyloglucan glycosyltransferase 2	AT4G31590.1	Cellulose-synthase-like C5 	LOC_Os09g25900.1	"CSLC2 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	NA	NA	NA
PtpAffx.143356.1.S1_at	E	E	CN522188	CN522188	NA	NA	NA	NA	AT5G11420.1	"Protein of unknown function, DUF642 "	LOC_Os01g42520.1	expressed protein	Medtr1g013340.1	Galactose-binding like 	NA	NA	NA
PtpAffx.14337.2.A1_at	E	E	BU892673	BU892673	NA	NA	P05478	18.5 kDa class I heat shock protein	AT2G29500.1	HSP20-like chaperones superfamily protein 	LOC_Os01g04360.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr4g124600.1	HSP20-like chaperone 	NA	NA	NA
PtpAffx.143391.1.A1_at	E	E	CV233177	CV233177	NA	NA	Q8H100	Probable ADP-ribosylation factor GTPase-activating protein AGD8	AT4G17890.1	ARF-GAP domain 8 	LOC_Os03g63710.1	"GTPase-activating protein, putative, expressed"	Medtr8g078470.1	Arf GTPase activating protein 	NA	NA	NA
PtpAffx.143576.1.S1_at	E	E	CV280247	CV280247	NA	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT4G14270.2	Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. 	LOC_Os03g23010.5	expressed protein	Medtr3g026140.1	Aldehyde dehydrogenase 	NA	NA	NA
PtpAffx.143601.2.S1_at	E	E	CV272206	CV272206	NA	NA	NA	NA	AT2G43190.4	ribonuclease P family protein 	LOC_Os05g39530.1	"ribonuclease P family protein, putative, expressed"	Medtr5g007980.1	Ribonuclease P subunit 	NA	NA	NA
PtpAffx.14371.1.S1_at	E	E	CV261358	CV261358	NA	NA	Q05758	"Ketol-acid reductoisomerase, chloroplastic"	AT3G58610.3	ketol-acid reductoisomerase 	LOC_Os01g46380.1	"ketol-acid reductoisomerase, chloroplast precursor, putative, expressed"	Medtr4g109610.1	Acetohydroxy acid isomeroreductase; ; 	NA	NA	NA
PtpAffx.143938.1.S1_at	E	E	BU835695	BU835695	NA	NA	NA	NA	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g41930.6	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	NA	NA	NA
PtpAffx.143990.1.S1_at	E	E	BU830975	BU830975	scaffold_2:12183732-12184026(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144008.1.S1_at	E	E	BU833721	BU833721	NA	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os08g03650.1	"BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	NA	NA	NA
PtpAffx.144144.1.S1_at	E	E	BU880665	BU880665	NA	NA	P12955	Xaa-Pro dipeptidase	AT4G29490.1	Metallopeptidase M24 family protein 	LOC_Os02g13140.1	"xaa-Pro dipeptidase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.144258.1.S1_at	E	E	DN500717	DN500717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144281.1.S1_at	E	E	BU808953	BU808953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144424.1.S1_at	E	E	CK103024	CK103024	NA	NA	NA	NA	AT4G34420.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	NA	NA	Medtr4g129280.1	"nodulation protein-related, putative "	NA	NA	NA
PtpAffx.1447.3.S1_at	E	E	CV233248	CV233248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144845.1.S1_at	E	E	DN499191	DN499191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144931.1.S1_at	E	E	CK110237	CK110237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145019.1.A1_at	E	E	DN491751	DN491751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145030.1.A1_at	E	E	DN491268	DN491268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145059.1.A1_at	E	E	DN490321	DN490321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145147.1.A1_at	E	E	DN485867	DN485867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145173.1.A1_s_at	E	E	DN484554	DN484554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145175.1.A1_at	E	E	DN484479	DN484479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145558.2.S1_at	E	E	CV269892	CV269892	NA	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	NA	NA	NA
PtpAffx.145915.1.S1_at	E	E	BU815760	BU815760	NA	NA	P46573	"Protein kinase APK1B, chloroplastic"	AT2G07180.2	Protein kinase superfamily protein 	LOC_Os06g45280.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g081040.1	Protein kinase 	NA	NA	NA
PtpAffx.146199.3.A1_at	E	E	DN487009	DN487009	NA	NA	Q6DGP2	Pre-mRNA-splicing factor syf2	AT2G16860.1	GCIP-interacting family protein 	LOC_Os06g49740.2	"pre-mRNA-splicing factor syf2, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.14624.3.S1_at	E	E	CV226910	CV226910	NA	NA	P35132	SUMO-conjugating enzyme UBC9	AT4G27960.2	ubiquitin conjugating enzyme 9 	LOC_Os06g30970.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr3g083600.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.146651.1.A1_at	E	E	CV268348	CV268348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146687.1.A1_at	E	E	CV269061	CV269061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.14672.1.A1_x_at	E	E	CV240002	CV240002	scaffold_6:1227211-1230453(-) (10)	NA	NA	NA	AT4G16380.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr8g148830.1	Heavy metal transport/detoxification protein 	NA	NA	NA
PtpAffx.14691.1.S1_at	E	E	DN488430	DN488430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146946.1.A1_at	E	E	CV256848	CV256848	scaffold_6:6314351-6314850(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g024960.1	Protein of unknown function DUF594 	NA	NA	NA
PtpAffx.146955.1.A1_at	E	E	CV240637	CV240637	scaffold_17:6977482-6977925(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147042.1.A1_at	E	E	CV277259	CV277259	scaffold_3:4759840-4760393(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147052.2.A1_at	E	E	DN491890	DN491890	NA	NA	Q0V7V2	Probable protein phosphatase 2C 42	AT3G17090.1	Protein phosphatase 2C family protein 	LOC_Os06g50380.3	"protein phosphatase 2C, putative, expressed"	Medtr2g037990.1	Protein phosphatase 2C; 	NA	NA	NA
PtpAffx.147060.1.A1_at	E	E	CV252836	CV252836	NA	NA	NA	NA	AT2G17975.1	zinc finger (Ran-binding) family protein 	NA	NA	Medtr8g090040.1	"Zinc finger, RanBP2-type "	NA	NA	NA
PtpAffx.147103.1.A1_at	E	E	CV251110	CV251110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147121.1.A1_at	E	E	CV251950	CV251950	scaffold_16:1190987-1191290(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147186.1.A1_at	E	E	CV246670	CV246670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147206.1.A1_at	E	E	CV245523	CV245523	scaffold_13:14301124-14301417(-) (10)	NA	NA	NA	NA	NA	LOC_Os02g01840.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.147207.1.A1_at	E	E	CV245408	CV245408	NA	NA	Q06559	40S ribosomal protein S3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.147211.1.A1_at	E	E	CV245352	CV245352	NA	NA	Q29FC9	Ubiquitin thioesterase OTU1	AT1G50670.1	OTU-like cysteine protease family protein 	LOC_Os02g06890.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr5g100030.1	"Ovarian tumour, otubain; Zinc finger, C2H2-type "	NA	NA	NA
PtpAffx.147214.1.A1_at	E	E	CV244931	CV244931	NA	NA	Q9NB21	40S ribosomal protein S7	AT3G02560.2	Ribosomal protein S7e family protein 	LOC_Os03g18580.1	"40S ribosomal protein S7, putative"	Medtr6g022820.1	Ribosomal protein S7E 	NA	NA	NA
PtpAffx.147231.1.A1_at	E	E	CV244696	CV244696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147263.1.A1_at	E	E	CV240260	CV240260	NA	NA	P34842	Cytochrome c oxidase subunit 3	ATMG00730.1	cytochrome c oxidase subunit 3 	NA	NA	Medtr1g005240.1	"Cytochrome c oxidase, subunit III; H+-transporting two-sector ATPase, A subunit "	NA	NA	NA
PtpAffx.147288.1.A1_at	E	E	CV242786	CV242786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147361.1.A1_at	E	E	CV240569	CV240569	scaffold_6:4474262-4474635(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147366.1.A1_at	E	E	CV240395	CV240395	scaffold_16:5193346-5193587(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147387.1.A1_at	E	E	CV243901	CV243901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147450.1.A1_at	E	E	CV237080	CV237080	NA	NA	Q9LPV9	WD repeat-containing protein LWD1	AT1G12910.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g32430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g099620.1	WD40-like 	NA	NA	NA
PtpAffx.147571.1.A1_a_at	E	E	CV232913	CV232913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147571.4.A1_at	E	E	CV228602	CV228602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147688.1.A1_at	E	E	CV228627	CV228627	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147740.1.A1_at	E	E	CV226861	CV226861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147982.2.S1_s_at	E	E	CX175215	CX175215	scaffold_14:8261086-8262528(+) (10)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g133540.1	Protein kinase 	NA	NA	NA
PtpAffx.147997.2.S1_at	E	E	CK107617	CK107617	NA	NA	NA	NA	AT2G19160.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os04g51794.2	"DNA binding protein, putative, expressed"	Medtr8g129570.1	"Protein of unknown function DUF266, plant "	NA	NA	NA
PtpAffx.148046.1.S1_at	E	E	BU896059	BU896059	NA	NA	Q9SJZ2	Peroxidase 17	AT2G22420.1	Peroxidase superfamily protein 	LOC_Os09g29490.1	"peroxidase precursor, putative, expressed"	Medtr4g032010.1	"Haem peroxidase, plant/fungal/bacterial "	NA	NA	NA
PtpAffx.148281.1.S1_at	E	E	CX655665	CX655665	NA	NA	Q9USQ7	Meiotically up-regulated gene 71 protein	AT3G04480.1	endoribonucleases 	LOC_Os02g56565.1	"endoribonuclease, putative, expressed"	Medtr7g135060.1	Endoribonuclease L-PSP; 	NA	NA	NA
PtpAffx.14833.2.S1_at	E	E	BU814338	BU814338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148643.1.S1_at	E	E	CX657413	CX657413	NA	NA	O13759	RNA-binding post-transcriptional regulator csx1	AT1G47490.1	RNA-binding protein 47C 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g148180.1	"Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.148798.1.S1_at	E	E	CK105661	CK105661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148850.1.S1_at	E	E	CK108918	CK108918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148868.1.S1_at	E	E	BU889057	BU889057	scaffold_12:7812522-7813429(-) (10)	NA	Q8WQ86	Microtubule-associated protein RP/EB family member 1	AT3G47690.1	microtubule end binding protein EB1A 	LOC_Os04g54940.1	"ATEB1A-like microtubule associated protein, putative, expressed"	Medtr8g112510.1	Calponin-like actin-binding; EB1 	NA	NA	NA
PtpAffx.148889.1.S1_at	E	E	CF229938	CF229938	NA	NA	NA	NA	AT4G38660.2	Pathogenesis-related thaumatin superfamily protein 	NA	NA	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	NA	NA	NA
PtpAffx.149029.1.A1_at	E	E	CK094823	CK094823	scaffold_16:5192317-5192378(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149029.1.A1_s_at	E	E	CK094823	CK094823	scaffold_16:5192036-5192331(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149073.1.A1_at	E	E	CK091910	CK091910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149112.1.A1_at	E	E	CK090485	CK090485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149231.1.S1_at	E	E	CV237182	CV237182	NA	NA	Q8H8U5	Protein IN2-1 homolog B	AT5G02790.1	Glutathione S-transferase family protein 	LOC_Os03g17470.1	"IN2-1 protein, putative, expressed"	AC235022_17.1	Thioredoxin fold; Thioredoxin-like fold AC235022.1 105935-107691 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.149373.1.S1_at	E	E	CF119593	CF119593	NA	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os04g02820.3	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	NA	NA
PtpAffx.149802.1.S1_at	E	E	BU885093	BU885093	NA	NA	A4GYS0	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic"	ATCG00500.1	acetyl-CoA carboxylase carboxyl transferase subunit beta 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149883.1.S1_at	E	E	CK090823	CK090823	scaffold_17:3678861-3679459(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.150.1.S1_at	E	E	DN492132	DN492132	scaffold_7:253055-253542(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1501.1.A1_at	E	E	CV265283	CV265283	scaffold_2685:2700-2876(-) (10)//scaffold_2926:237-413(-) (10)//scaffold_4:17518232-17518408(+) (10)//scaffold_4:17522535-17522711(+) (10)	NA	NA	NA	NA	NA	NA	NA	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.1501.3.S1_at	E	E	DN488380	DN488380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.150133.1.S1_at	E	E	CK114142	CK114142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15038.1.A1_a_at	E	E	CV266349	CV266349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15038.4.S1_at	E	E	CV258926	CV258926	scaffold_2:86679-86811(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.150551.1.A1_at	E	E	CV245234	CV245234	scaffold_1:3282421-3284701(-) (10)	NA	NA	NA	AT1G55325.2	RNA polymerase II transcription mediators 	LOC_Os05g37500.1	expressed protein	Medtr3g105710.1	Rhodopsin-like GPCR superfamily; TRAP240 	NA	NA	NA
PtpAffx.150928.1.S1_at	E	E	CA932008	CA932008	NA	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os08g40530.2	"calcium-transporting ATPase 9, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	NA	NA	NA
PtpAffx.150930.1.S1_at	E	E	CK103122	CK103122	NA	NA	Q9ZPH9	Probable methyltransferase PMT15	AT4G00750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	NA	NA	NA
PtpAffx.151011.1.S1_at	E	E	DN493965	DN493965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151029.1.S1_at	E	E	CK094467	CK094467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151075.1.S1_at	E	E	BI071354	BI071354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151235.1.S1_at	E	E	AI162352	AI162352	NA	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	NA	NA	NA
PtpAffx.151306.1.S1_at	E	E	CK113006	CK113006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151331.1.S1_at	E	E	DN500753	DN500753	scaffold_18:13145857-13146379(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151367.1.S1_at	E	E	BU832893	BU832893	NA	NA	NA	NA	AT2G18950.1	homogentisate phytyltransferase 1 	LOC_Os06g44840.2	"prenyltransferase, putative, expressed"	Medtr8g129290.1	UbiA prenyltransferase 	NA	NA	NA
PtpAffx.151368.1.S1_at	E	E	BU832252	BU832252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151388.1.S1_at	E	E	DN488427	DN488427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151571.1.A1_at	E	E	DN491135	DN491135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151583.1.A1_at	E	E	DN490871	DN490871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151625.1.A1_at	E	E	DN488398	DN488398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151703.1.A1_at	E	E	DN485241	DN485241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151714.1.A1_at	E	E	CV244901	CV244901	scaffold_1:35093196-35097144(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151714.2.A1_at	E	E	DN484868	DN484868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151764.1.A1_at	E	E	BP936445	BP936445	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151811.1.A1_at	E	E	BP936866	BP936866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151954.2.A1_at	E	E	CV257113	CV257113	NA	NA	Q94JW0	Deoxyhypusine hydroxylase	AT3G58180.1	ARM repeat superfamily protein 	LOC_Os12g06620.1	"deoxyhypusine hydroxylase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.152089.2.S1_at	E	E	CV264845	CV264845	NA	NA	NA	NA	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.152154.1.S1_at	E	E	DN493734	DN493734	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	NA	NA	NA
PtpAffx.152255.1.S1_at	E	E	CV274461	CV274461	NA	NA	Q99LH1	Nucleolar GTP-binding protein 2	AT1G52980.1	GTP-binding family protein 	LOC_Os03g22890.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	NA	NA
PtpAffx.15237.4.S1_at	E	E	CK318490	CK318490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15262.1.S1_at	E	E	CK097366	CK097366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.152681.1.S1_at	E	E	CK107100	CK107100	NA	NA	P45816	SEC14 cytosolic factor	AT2G21520.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g04020.1	expressed protein	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	NA	NA	NA
PtpAffx.152933.1.A1_at	E	E	CV277851	CV277851	NA	NA	NA	NA	AT5G61670.2	Encodes a close homolog of the Cauliflower OR (Orange) protein.  The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation.  Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons. 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15325.1.S1_at	E	E	BU894742	BU894742	NA	NA	NA	NA	AT1G08640.1	Chloroplast J-like domain 1 	LOC_Os08g03380.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.15327.2.A1_at	E	E	BP931895	BP931895	NA	NA	Q7Y0E8	Probable nucleoredoxin 1-1	AT1G60420.1	DC1 domain-containing protein 	LOC_Os03g29190.2	"PDI, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.15327.4.A1_at	E	E	CV274369	CV274369	NA	NA	Q7Y0E8	Probable nucleoredoxin 1-1	AT3G22200.2	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os04g52450.2	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	NA	NA
PtpAffx.153311.1.A1_at	E	E	CV262342	CV262342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153330.1.A1_at	E	E	CV261683	CV261683	NA	NA	Q8GVE3	Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase	AT5G49690.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g10230.1	"glucosyltransferase, putative, expressed"	Medtr2g008370.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
PtpAffx.15347.1.S1_at	E	E	BI122040	BI122040	NA	NA	Q9FHW7	SKP1-like protein 1B	AT5G42190.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 	LOC_Os09g36830.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr7g021210.1	SKP1 component 	NA	NA	NA
PtpAffx.153557.1.A1_at	E	E	CV252240	CV252240	NA	NA	O81086	Alpha-bisabolene synthase	AT5G23960.2	terpene synthase 21 	NA	NA	Medtr7g010000.1	Terpenoid synthase 	NA	NA	NA
PtpAffx.153567.1.A1_s_at	E	E	CV252165	CV252165	scaffold_7:2573021-2573107(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153571.1.A1_at	E	E	CV260414	CV260414	scaffold_15:4261900-4262165(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153597.1.A1_at	E	E	CV251115	CV251115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153650.1.A1_at	E	E	CV249045	CV249045	scaffold_6:5900665-5900861(+) (10)	NA	O48809	Leucine-rich repeat extensin-like protein 2	AT1G62440.1	leucine-rich repeat/extensin 2 	NA	NA	Medtr3g148740.1	"Leucine-rich repeat, N-terminal "	NA	NA	NA
PtpAffx.153658.1.A1_at	E	E	CV248450	CV248450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153668.2.A1_at	E	E	CV234128	CV234128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153669.1.A1_at	E	E	CV247741	CV247741	NA	NA	P46269	Cytochrome b-c1 complex subunit 8	AT3G10860.1	"Cytochrome b-c1 complex, subunit 8 protein "	LOC_Os06g07969.1	"cytochrome b-c1 complex subunit 8, putative, expressed"	Medtr5g083510.1	"Cytochrome b-c1 complex subunit 8 (exp=-1; wgp=-1; cg=-1; clo, putative "	NA	NA	NA
PtpAffx.153683.1.A1_at	E	E	CV247918	CV247918	NA	NA	B2GEY4	ATP-dependent helicase/nuclease subunit A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153695.1.A1_at	E	E	CV246282	CV246282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153720.1.A1_at	E	E	CV245500	CV245500	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g126000.1	"Uncharacterized protein At1g15400, putative "	NA	NA	NA
PtpAffx.153724.1.A1_at	E	E	CV242261	CV242261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153736.1.A1_at	E	E	CV245046	CV245046	NA	NA	Q9VS34	60S ribosomal protein L18	AT3G05590.1	ribosomal protein L18 	LOC_Os05g06310.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	NA	NA	NA
PtpAffx.153747.1.A1_at	E	E	CV244668	CV244668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153755.1.A1_at	E	E	CV244123	CV244123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153759.2.A1_at	E	E	CV244625	CV244625	scaffold_4:20692470-20692644(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153765.1.A1_at	E	E	CV243818	CV243818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153766.1.A1_at	E	E	CV243806	CV243806	scaffold_3:11801855-11803292(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153770.1.A1_at	E	E	CV243737	CV243737	NA	NA	P09003	ATP synthase protein MI25	ATMG00640.1	"hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153788.1.A1_at	E	E	CV242898	CV242898	NA	NA	Q9SJ12	"Probable ATP synthase 24 kDa subunit, mitochondrial"	AT2G21870.1	copper ion binding;cobalt ion binding;zinc ion binding 	LOC_Os02g03860.1	"mitochondrial ATP synthase precursor, putative, expressed"	Medtr4g141050.1	"Probable ATP synthase 24 kDa subunit, mitochondrial precursor, putative "	NA	NA	NA
PtpAffx.153815.1.A1_at	E	E	CV241744	CV241744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153822.1.A1_at	E	E	CV241317	CV241317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153830.1.A1_at	E	E	CV241124	CV241124	scaffold_13:631917-632446(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153833.1.A1_at	E	E	CV240905	CV240905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153835.1.A1_at	E	E	CV245900	CV245900	NA	NA	Q9V3G1	60S ribosomal protein L8	AT3G51190.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr5g021750.1	Elongation factor P-like protein YeiP 	NA	NA	NA
PtpAffx.153862.1.A1_at	E	E	CV239516	CV239516	NA	NA	P25843	Profilin	AT5G56600.1	profilin 3 	LOC_Os06g05880.1	"profilin domain containing protein, expressed"	Medtr4g160120.1	Plant profilin 	NA	NA	NA
PtpAffx.153864.1.A1_at	E	E	CV239487	CV239487	scaffold_2:8633166-8633594(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153865.1.A1_at	E	E	CV239443	CV239443	NA	NA	Q9W237	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g130210.1	Ribosomal protein S9 	NA	NA	NA
PtpAffx.153882.1.A1_at	E	E	CV233892	CV233892	NA	NA	B2GAL2	Putative sporulation transcription regulator whiA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153890.1.A1_at	E	E	CV238454	CV238454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153933.1.A1_at	E	E	CV236858	CV236858	scaffold_178:35765-36135(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153960.2.A1_at	E	E	CK095128	CK095128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153979.1.A1_at	E	E	CV234492	CV234492	scaffold_17:13033152-13033546(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.154.1.A1_at	E	E	DN491773	DN491773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.154027.1.A1_at	E	E	CV232308	CV232308	scaffold_2:3300350-3300937(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.154083.2.A1_at	E	E	CV230092	CV230092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.154091.1.A1_at	E	E	CV229768	CV229768	scaffold_16:11220409-11220606(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.154108.1.A1_at	E	E	CV225657	CV225657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15423.2.A1_at	E	E	DN491498	DN491498	NA	NA	Q9LKW9	Sodium/hydrogen exchanger 7	AT2G01980.1	"sodium proton exchanger, putative (NHX7) (SOS1) "	LOC_Os12g44360.2	"sodium/hydrogen exchanger 7, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.15430.1.S1_at	E	E	CK110126	CK110126	NA	NA	Q10421	40S ribosomal protein S28	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15434.1.A1_at	E	E	CV251191	CV251191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.154516.1.A1_at	E	E	AJ772766	AJ772766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15454.1.S1_at	E	E	BU812420	BU812420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.154542.1.S1_at	E	E	CK098250	CK098250	NA	NA	Q9SLK2	ALA-interacting subunit 3	AT1G54320.1	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 	LOC_Os02g07750.1	"cell cycle control protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.154542.2.S1_at	E	E	AJ771909	AJ771909	NA	NA	Q9LTW0	ALA-interacting subunit 1	AT3G12740.1	ALA-interacting subunit 1 	LOC_Os02g07750.1	"cell cycle control protein, putative, expressed"	Medtr2g122470.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	NA
PtpAffx.154983.1.S1_at	E	E	CK115787	CK115787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.154992.1.S1_at	E	E	CV271198	CV271198	NA	NA	NA	NA	AT5G07980.1	dentin sialophosphoprotein-related 	LOC_Os03g11460.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.155435.3.A1_at	E	E	CK096005	CK096005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155529.1.A1_at	E	E	CK092125	CK092125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155583.1.A1_at	E	E	CK089955	CK089955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155748.1.S1_at	E	E	CF232054	CF232054	NA	NA	NA	NA	AT2G47500.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	NA	NA	NA
PtpAffx.156.1.S1_at	E	E	BU875120	BU875120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.156164.1.S1_at	E	E	CK098098	CK098098	NA	NA	P62302	40S ribosomal protein S13	AT4G00100.1	ribosomal protein S13A 	LOC_Os08g02410.1	"40S ribosomal protein S13, putative, expressed"	Medtr5g012060.1	"S15/NS1, RNA-binding; Ribosomal S13S15 N-terminal "	NA	NA	NA
PtpAffx.156310.3.S1_at	E	E	DN493017	DN493017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.156416.1.A1_at	E	E	DN488220	DN488220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15659.1.S1_at	E	E	CV232365	CV232365	scaffold_13:14444234-14444728(+) (11)	NA	Q9SKT3	Secretory carrier-associated membrane protein 1	AT2G20840.1	Secretory carrier membrane protein (SCAMP) family protein 	LOC_Os07g37740.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	NA	NA	NA
PtpAffx.156713.1.S1_at	E	E	DN497323	DN497323	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g087090.1	hypothetical protein 	NA	NA	NA
PtpAffx.156731.1.S1_at	E	E	CX172632	CX172632	NA	NA	NA	NA	AT3G06130.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os12g05040.6	"heavy-metal-associated domain-containing protein, putative, expressed"	AC233679_1.1	Heavy metal transport/detoxification protein AC233679.1 2787-4960 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.156768.1.S1_s_at	E	E	CB239522	CB239522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.156778.1.S1_at	E	E	AI162289	AI162289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.156793.1.A1_a_at	E	E	BU869271	BU869271	scaffold_5:8256235-8256290(+) (11)//scaffold_5:8256295-8256394(+) (11)//scaffold_5:8256355-8256410(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.156935.1.S1_at	E	E	DN499142	DN499142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157035.1.S1_at	E	E	CK107316	CK107316	NA	NA	NA	NA	NA	NA	LOC_Os08g25030.1	plant protein of unknown function domain containing protein	Medtr5g093520.1	Plant protein of unknown function 	NA	NA	NA
PtpAffx.157381.1.S1_at	E	E	CK092964	CK092964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157405.1.S1_at	E	E	CF233029	CF233029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157525.1.S1_at	E	E	DN497180	DN497180	NA	NA	NA	NA	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.1	"KH, type 1 "	NA	NA	NA
PtpAffx.157535.1.A1_at	E	E	CV256736	CV256736	NA	NA	Q14FF1	"ATP synthase epsilon chain, chloroplastic"	ATCG00470.1	ATP synthase epsilon chain 	LOC_Os10g21266.1	"ATP synthase subunit beta, putative"	Medtr3g169420.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, delta/epsilon subunit "	NA	NA	NA
PtpAffx.157569.1.S1_at	E	E	CF231935	CF231935	NA	NA	Q86KZ2	General transcription factor IIH subunit 2	AT1G05055.1	general transcription factor II H2 	LOC_Os04g42990.1	"suppressor of stem-loop protein 1, putative, expressed"	Medtr7g106470.1	"von Willebrand factor, type A; Zinc finger, C2H2-type "	NA	NA	NA
PtpAffx.157617.1.S1_at	E	E	CF231471	CF231471	NA	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	Medtr4g136620.1	Protein of unknown function DUF81 	NA	NA	NA
PtpAffx.157702.1.S1_s_at	E	E	CF936051	CF936051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157728.1.S1_at	E	E	DN501555	DN501555	scaffold_4:7097340-7097660(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157827.1.S1_at	E	E	DN497135	DN497135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157865.1.S1_at	E	E	AJ774281	AJ774281	NA	NA	Q9SN58	UDP-glucose 4-epimerase 2	AT1G64440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g51670.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	NA	NA	NA
PtpAffx.158098.1.A1_at	E	E	DN486144	DN486144	NA	NA	P02723	"ADP,ATP carrier protein"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	NA	NA	NA
PtpAffx.158130.1.A1_at	E	E	DN484851	DN484851	NA	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr7g130070.1	Cullin; Winged helix repressor DNA-binding 	NA	NA	NA
PtpAffx.158329.1.A1_at	E	E	BP930138	BP930138	NA	NA	Q8CFY5	"Protoheme IX farnesyltransferase, mitochondrial"	AT2G44520.1	cytochrome c oxidase 10 	LOC_Os01g34390.1	"prenyltransferase, putative, expressed"	Medtr1g146440.1	UbiA prenyltransferase 	NA	NA	NA
PtpAffx.158487.1.S1_at	E	E	DN494994	DN494994	NA	NA	NA	NA	AT3G01930.2	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	NA	NA	NA
PtpAffx.158637.1.S1_at	E	E	CX656175	CX656175	NA	NA	P45350	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	NA	NA	NA
PtpAffx.159255.1.A1_at	E	E	CV281074	CV281074	NA	NA	NA	NA	AT4G05120.1	Major facilitator superfamily protein 	LOC_Os07g37100.2	"nucleoside transporter, putative, expressed"	AC202489_34.1	Delayed-early response protein/equilibrative nucleoside transporter AC202489.10 142781-144548 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.159357.1.A1_at	E	E	CV276256	CV276256	NA	NA	NA	NA	AT5G64130.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os05g49160.2	expressed protein	Medtr2g077020.1	Lg106-like 	NA	NA	NA
PtpAffx.159397.1.A1_at	E	E	CV274395	CV274395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159806.1.A1_at	E	E	CV258418	CV258418	scaffold_7:926539-933490(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159810.1.A1_at	E	E	CV258351	CV258351	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159878.1.A1_at	E	E	CV256589	CV256589	NA	NA	P49200	40S ribosomal protein S20-1	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g14530.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	NA	NA	NA
PtpAffx.159981.1.A1_at	E	E	CV252364	CV252364	NA	NA	P06155	Integrase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159983.1.A1_at	E	E	CV252464	CV252464	NA	NA	P14814	Replication protein 14	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160010.1.A1_at	E	E	CV251187	CV251187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160025.2.A1_at	E	E	CV228411	CV228411	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160074.1.A1_at	E	E	CV247765	CV247765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160080.1.A1_at	E	E	CV247538	CV247538	NA	NA	NA	NA	AT5G62500.1	end binding protein 1B 	LOC_Os04g54940.1	"ATEB1A-like microtubule associated protein, putative, expressed"	Medtr8g112510.1	Calponin-like actin-binding; EB1 	NA	NA	NA
PtpAffx.1601.14.S1_at	E	E	CV239097	CV239097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1601.3.S1_x_at	E	E	CV225715	CV225715	scaffold_6:6215699-6216097(+) (11)	NA	P10871	"Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic"	AT2G39730.1	rubisco activase 	LOC_Os11g47980.1	expressed protein	Medtr5g087780.1	"AAA ATPase, central region "	NA	NA	NA
PtpAffx.16010.1.S1_at	E	E	DN491522	DN491522	NA	NA	NA	NA	AT5G07250.1	RHOMBOID-like protein 3 	LOC_Os11g47840.1	"OsRhmbd18 - Putative Rhomboid homologue, expressed"	Medtr2g116690.1	Rhomboid-like protein 	NA	NA	NA
PtpAffx.160136.1.A1_at	E	E	CV245059	CV245059	NA	NA	P15309	Prostatic acid phosphatase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160137.1.A1_at	E	E	CV245039	CV245039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160173.1.A1_at	E	E	CV243881	CV243881	scaffold_8:8790945-8791308(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160182.1.A1_at	E	E	CV233053	CV233053	NA	NA	Q9ATB4	Transcriptional adapter ADA2b	AT4G16420.1	homolog of yeast ADA2 2B 	LOC_Os03g53960.2	"transcriptional adaptor, putative, expressed"	Medtr2g030360.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; SWIRM; Homeodomain-related "	NA	NA	NA
PtpAffx.160184.1.A1_at	E	E	CV243514	CV243514	NA	NA	NA	NA	AT5G20180.2	Ribosomal protein L36 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160189.1.A1_at	E	E	CV243330	CV243330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160197.1.A1_at	E	E	CV242991	CV242991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160202.1.A1_at	E	E	CV242856	CV242856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160203.1.A1_at	E	E	CV242750	CV242750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160210.1.A1_at	E	E	CV242610	CV242610	NA	NA	P49630	60S ribosomal protein L36	AT5G02450.1	Ribosomal protein L36e family protein 	LOC_Os01g62350.1	"60S ribosomal protein L36-2, putative, expressed"	Medtr1g126960.2	Ribosomal protein L36E 	NA	NA	NA
PtpAffx.160222.1.A1_at	E	E	CV240534	CV240534	scaffold_1033:2494-2774(-) (10)//scaffold_11:17424857-17425188(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160241.1.A1_at	E	E	CV241336	CV241336	scaffold_14:11112707-11112983(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160242.1.A1_at	E	E	CV241332	CV241332	NA	NA	Q2LZ58	Protein charybde	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160268.1.A1_at	E	E	CV240478	CV240478	scaffold_4:9134089-9134516(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160279.1.A1_at	E	E	CV240135	CV240135	NA	NA	P18432	Myosin regulatory light chain 2	AT5G37780.1	calmodulin 1 	LOC_Os05g41210.1	"OsCam2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.160291.1.A1_at	E	E	CV239561	CV239561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160302.1.A1_at	E	E	CV241565	CV241565	NA	NA	O76756	40S ribosomal protein S8	AT5G20290.1	Ribosomal protein S8e family protein 	LOC_Os02g28810.1	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	NA
PtpAffx.160319.1.A1_at	E	E	CV238691	CV238691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160343.1.A1_at	E	E	CV237835	CV237835	NA	NA	NA	NA	AT3G47540.1	Chitinase family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160371.1.A1_at	E	E	CV236523	CV236523	scaffold_6:16135903-16136120(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160421.1.A1_at	E	E	CV234589	CV234589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160456.1.A1_at	E	E	CV233012	CV233012	NA	NA	NA	NA	AT5G15880.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g02130.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.16047.1.S1_at	E	E	DN491783	DN491783	scaffold_7:10827939-10828285(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160603.1.A1_at	E	E	CV227293	CV227293	NA	NA	NA	NA	AT2G17200.1	ubiquitin family protein 	LOC_Os03g03920.1	"Ubiquitin family domain containing protein, expressed"	Medtr5g023730.1	UV excision repair protein Rad23; 	NA	NA	NA
PtpAffx.160624.1.A1_at	E	E	CV226412	CV226412	NA	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g093610.1	"Lipolytic enzyme, G-D-S-L; "	NA	NA	NA
PtpAffx.160654.2.A1_at	E	E	CK090777	CK090777	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g022360.1	Senescence-associated 	NA	NA	NA
PtpAffx.16108.1.S1_at	E	E	DN488393	DN488393	NA	NA	A4GYW6	"NAD(P)H-quinone oxidoreductase chain 4, chloroplastic"	ATCG01050.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os06g46435.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr7g021650.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.16113.1.S1_at	E	E	DN498038	DN498038	scaffold_12:1397349-1397519(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161529.1.S1_at	E	E	CK110939	CK110939	NA	NA	Q14FA4	"NAD(P)H-quinone oxidoreductase subunit I, chloroplastic"	ATCG01090.1	NADPH dehydrogenases 	LOC_Os10g21398.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr7g021610.1	Alpha-helical ferredoxin 	NA	NA	NA
PtpAffx.161600.1.S1_at	E	E	CK107932	CK107932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161795.1.S1_at	E	E	AI164668	AI164668	NA	NA	Q7XA86	Probable S-acyltransferase At3g51390	AT3G51390.1	DHHC-type zinc finger family protein 	LOC_Os12g29560.1	"DHHC zinc finger domain containing protein, expressed"	Medtr5g023180.1	"Zinc finger, DHHC-type "	NA	NA	NA
PtpAffx.161883.1.A1_at	E	E	CK095813	CK095813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161954.1.A1_at	E	E	CK092533	CK092533	NA	NA	Q69VG1	Chitin-inducible gibberellin-responsive protein 1	AT1G50600.1	scarecrow-like 5 	LOC_Os07g36170.2	"chitin-inducible gibberellin-responsive protein, putative, expressed"	Medtr2g096350.1	GRAS transcription factor 	NA	NA	NA
PtpAffx.161956.1.A1_at	E	E	CK091892	CK091892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16206.1.S1_at	E	E	DN495338	DN495338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.162168.1.S1_at	E	E	CF228578	CF228578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16233.1.S1_at	E	E	CV232899	CV232899	scaffold_1:3136877-3137366(-) (9)	NA	Q4R5D9	YTH domain family protein 2	AT3G13460.4	evolutionarily conserved C-terminal region 2 	LOC_Os03g06240.2	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	NA	NA	NA
PtpAffx.162331.2.S1_at	E	E	AJ780051	AJ780051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16259.1.S1_at	E	E	DN493013	DN493013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.162632.1.A1_at	E	E	CN518180	CN518180	NA	NA	O24645	Anthranilate N-benzoyltransferase protein 1	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.16267.1.S1_at	E	E	DN502506	DN502506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16276.1.A1_at	E	E	DN492142	DN492142	scaffold_6:20370584-20370800(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16277.1.S1_at	E	E	DN502078	DN502078	scaffold_154:5533-7243(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16292.1.S1_at	E	E	DN491765	DN491765	NA	NA	Q9M9Z2	"Probable thylakoidal processing peptidase 2, chloroplastic"	AT1G06870.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os09g28000.1	"OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	NA	NA	NA
PtpAffx.16298.1.A1_at	E	E	DN491541	DN491541	scaffold_5:23848509-23848848(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16308.2.S1_at	E	E	DN491143	DN491143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16318.1.A1_at	E	E	DN490938	DN490938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16333.1.S1_s_at	E	E	DN490058	DN490058	NA	NA	NA	NA	AT5G66780.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g51350.1	expressed protein	Medtr5g019950.1	"late embryogenesis abundant protein, related "	NA	NA	NA
PtpAffx.16334.1.A1_at	E	E	DN490031	DN490031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1634.4.S1_at	E	E	CV231235	CV231235	NA	NA	NA	NA	AT2G22125.1	binding 	LOC_Os06g11990.1	expressed protein	Medtr3g101080.1	C2 	NA	NA	NA
PtpAffx.16340.1.A1_at	E	E	DN489694	DN489694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.163401.1.A1_at	E	E	DN484752	DN484752	scaffold_12:13514754-13515097(+) (10)//scaffold_2065:3449-3792(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.163513.1.S1_at	E	E	CK106596	CK106596	scaffold_3:5178686-5180659(+) (10)	NA	O74545	Putative hydrolase C777.06c	AT3G13800.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os09g19920.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr8g018880.1	Beta-lactamase-like 	NA	NA	NA
PtpAffx.163629.2.S1_at	E	E	AJ778890	AJ778890	NA	NA	NA	NA	AT4G16146.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os03g19220.2	expressed protein	Medtr2g038860.1	Lg106-like 	NA	NA	NA
PtpAffx.163655.1.S1_at	E	E	AJ768724	AJ768724	NA	NA	Q14FA6	"NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic"	ATCG01060.1	"iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding "	LOC_Os10g21406.1	"photosystem I iron-sulfur center, putative"	Medtr7g021640.1	"4Fe-4S ferredoxin, iron-sulfur binding "	NA	NA	NA
PtpAffx.163759.1.S1_at	E	E	CK101449	CK101449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16386.2.A1_at	E	E	DN486871	DN486871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.163910.1.S1_at	E	E	CX658564	CX658564	NA	NA	O48781	SPX domain-containing protein 2	AT2G26660.1	SPX domain gene 2 	LOC_Os06g40120.1	"SPX domain containing protein, putative, expressed"	Medtr8g120400.1	"SPX, N-terminal "	NA	NA	NA
PtpAffx.16395.2.S1_at	E	E	DN496258	DN496258	NA	NA	NA	NA	AT5G10695.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g44980.1	conserved hypothetical protein	Medtr3g133270.1	hypothetical protein 	NA	NA	NA
PtpAffx.163950.1.S1_at	E	E	CK101978	CK101978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.163963.1.S1_at	E	E	CV269541	CV269541	NA	NA	Q9SBQ9	Flavonoid 3'-monooxygenase	AT3G48280.1	"cytochrome P450, family 71, subfamily A, polypeptide 25 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	NA	NA
PtpAffx.163990.1.S1_at	E	E	CX180766	CX180766	NA	NA	O48741	"Protochlorophyllide reductase C, chloroplastic"	AT1G03630.1	protochlorophyllide oxidoreductase C 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16403.1.S1_at	E	E	BU889851	BU889851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16405.1.A1_at	E	E	DN486407	DN486407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16414.1.A1_at	E	E	DN485819	DN485819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16416.1.S1_at	E	E	DN485741	DN485741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16417.1.A1_at	E	E	DN485722	DN485722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16449.1.A1_at	E	E	DN484246	DN484246	scaffold_5:24880860-24881171(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16450.5.S1_at	E	E	CX654681	CX654681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16457.2.S1_at	E	E	CV264621	CV264621	NA	NA	Q8CCA0	DCN1-like protein 4	AT1G15860.2	Domain of unknown function (DUF298) 	LOC_Os08g34070.2	"DCN1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.1654.1.S1_at	E	E	CV268903	CV268903	NA	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
PtpAffx.1654.2.S1_at	E	E	CV243120	CV243120	NA	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr8g008810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
PtpAffx.16588.1.A1_at	E	E	BP932654	BP932654	scaffold_19:6483136-6483537(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1659.1.A1_s_at	E	E	CV263918	CV263918	scaffold_18:12536944-12537247(+) (11)//scaffold_18:12543354-12543655(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16658.1.A1_at	E	E	BI127627	BI127627	NA	NA	NA	NA	AT2G44260.2	Plant protein of unknown function (DUF946) 	LOC_Os03g51150.1	expressed protein	Medtr2g080320.1	"Protein of unknown function DUF946, plant "	NA	NA	NA
PtpAffx.1672.2.A1_x_at	E	E	AF480619.1	AF480619.1	NA	NA	P45730	Phenylalanine ammonia-lyase	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os04g43800.1	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	NA	NA	NA
PtpAffx.16744.1.S1_at	E	E	BP933720	BP933720	scaffold_18:10289858-10291826(-) (9)	NA	Q54RA4	Probable iron/ascorbate oxidoreductase DDB_G0283291	AT1G35190.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g09300.3	"oxidoreductase, putative, expressed"	Medtr4g159750.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.16869.1.A1_at	E	E	CV244910	CV244910	scaffold_18:637522-637823(-) (11)	NA	Q5R9S1	Coiled-coil domain-containing protein 25	AT5G11500.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g13440.1	"coiled-coil domain-containing protein 25, putative, expressed"	AC225518_16.1	Protein of unknown function DUF814 AC225518.12 53469-49257 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.16909.1.S1_at	E	E	CV275556	CV275556	NA	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	NA	NA	NA
PtpAffx.16980.1.A1_a_at	E	E	CK095992	CK095992	scaffold_3:16374955-16375425(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1704.2.S1_at	E	E	CK088122	CK088122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17071.2.A1_at	E	E	CK104626	CK104626	NA	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os09g30130.1	"CSLE6 - cellulose synthase-like family E, expressed"	Medtr3g079580.1	Cellulose synthase 	NA	NA	NA
PtpAffx.17213.4.A1_at	E	E	CV268267	CV268267	NA	NA	Q93W77	"NifU-like protein 1, chloroplastic"	AT4G01940.1	NFU domain protein 1 	LOC_Os03g20010.1	"nifU, putative, expressed"	Medtr7g133310.1	"Nitrogen-fixing NifU, C-terminal "	NA	NA	NA
PtpAffx.17228.3.S1_at	E	E	AI162119	AI162119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17335.1.S1_at	E	E	CV281893	CV281893	scaffold_2:10860516-10860704(-) (10)	NA	O22152	Axial regulator YABBY 1	AT2G45190.1	Plant-specific transcription factor YABBY family protein 	LOC_Os02g42950.1	"YABBY domain containing protein, putative, expressed"	Medtr8g106280.1	High mobility group box 	NA	NA	NA
PtpAffx.17419.1.A1_at	E	E	CX175953	CX175953	scaffold_9:10705668-10706066(-) (11)	NA	Q8L883	Auxin transporter-like protein 5	AT2G21050.1	like AUXIN RESISTANT 2 	LOC_Os03g14080.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g097960.1	"Amino acid transporter, transmembrane "	NA	NA	NA
PtpAffx.175.1.S1_at	E	E	BU897007	BU897007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1752.1.S1_at	E	E	CV273432	CV273432	scaffold_14:6484671-6484948(-) (11)	NA	A4IFP3	Fatty acid desaturase 3	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	AC146568_19.1	"Zinc finger, C2H2-type; Fatty acid desaturase/sphingolipid desaturase AC146568.11 95455-93352 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.17639.1.S1_at	E	E	CV231629	CV231629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17653.2.A1_at	E	E	CV245163	CV245163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17653.4.S1_at	E	E	CX654495	CX654495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17653.7.A1_at	E	E	CV260037	CV260037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17675.1.A1_at	E	E	CV277098	CV277098	NA	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	NA	NA
PtpAffx.1770.7.A1_at	E	E	CX659098	CX659098	NA	NA	Q42896	Fructokinase-2	AT1G06030.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g66940.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	NA	NA	NA
PtpAffx.17757.1.S1_at	E	E	CV273959	CV273959	NA	NA	NA	NA	AT3G02420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g42010.1	expressed protein	AC233572_11.1	hypothetical protein AC233572.2 52137-58374 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.17777.1.A1_at	E	E	DN491465	DN491465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17823.3.A1_at	E	E	CV274282	CV274282	NA	NA	O04379	Protein argonaute	AT1G48410.3	Stabilizer of iron transporter SufD / Polynucleotidyl transferase 	LOC_Os04g47870.2	"PINHEAD, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.17887.1.A1_at	E	E	CV264306	CV264306	scaffold_1:7887051-7887456(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18098.2.S1_at	E	E	CV263810	CV263810	NA	NA	P20144	Wound-induced protein 1	AT3G10985.1	senescence associated gene 20 	LOC_Os05g27580.1	"wound-induced protein WI12, putative"	Medtr5g082480.1	Wound-induced WI12 	NA	NA	NA
PtpAffx.18100.4.A1_at	E	E	CK089892	CK089892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18249.1.A1_at	E	E	CB176586	CB176586	NA	NA	P92980	"5'-adenylylsulfate reductase 3, chloroplastic"	AT4G21990.1	APS reductase 3 	LOC_Os07g32570.2	"OsAPRL1  adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed"	NA	NA	NA	NA	NA
PtpAffx.18283.1.S1_at	E	E	AJ773318	AJ773318	scaffold_8:14948004-14948390(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18308.1.A1_at	E	E	CV243065	CV243065	scaffold_11:17203448-17203794(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18343.1.A1_at	E	E	CV252075	CV252075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18355.2.S1_at	E	E	CX655003	CX655003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18367.1.A1_at	E	E	CV250938	CV250938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18378.1.A1_at	E	E	CV250521	CV250521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18397.1.A1_at	E	E	CV249681	CV249681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18443.1.A1_at	E	E	CV251599	CV251599	scaffold_16:3205627-3206085(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18469.1.S1_at	E	E	BU888918	BU888918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18472.1.S1_at	E	E	CV245557	CV245557	NA	NA	Q93ZR6	O-acyltransferase WSD1	AT3G49200.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os01g48874.1	"wax synthase, putative, expressed"	AC151525_17.1	Protein of unknown function DUF1298 AC151525.18 75832-72871 F EGN_Mt090430 200	NA	NA	NA
PtpAffx.18539.1.A1_at	E	E	CV243251	CV243251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18559.1.A1_at	E	E	CV242586	CV242586	scaffold_3:17869903-17870163(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18579.1.A1_at	E	E	CV242021	CV242021	NA	NA	Q9VCI5	"Putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18581.1.A1_at	E	E	CV241982	CV241982	scaffold_15:7235225-7235599(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18582.1.S1_at	E	E	CK088076	CK088076	scaffold_9:6826920-6827822(-) (11)	NA	Q9CQL0	Protein FAM119A	AT2G26810.2	Putative methyltransferase family protein 	LOC_Os07g44730.1	expressed protein	Medtr1g019870.1	hypothetical protein 	NA	NA	NA
PtpAffx.18588.1.S1_at	E	E	CV271046	CV271046	NA	NA	A4GYV2	"50S ribosomal protein L2, chloroplastic"	ATCG01310.1	ribosomal protein L2 	LOC_Os10g21354.1	"chloroplast 50S ribosomal protein L2, putative"	Medtr3g043780.1	Ribosomal protein L2 	NA	NA	NA
PtpAffx.18651.1.A1_at	E	E	CV239313	CV239313	scaffold_11:7418210-7418562(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18719.3.A1_s_at	E	E	CK093553	CK093553	NA	NA	Q9Y2Z0	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	NA	NA	NA
PtpAffx.18763.1.A1_at	E	E	CV234545	CV234545	NA	NA	NA	NA	AT4G29070.2	Phospholipase A2 family protein 	NA	NA	Medtr2g130270.1	hypothetical protein 	NA	NA	NA
PtpAffx.18768.1.A1_at	E	E	CV234298	CV234298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18775.1.A1_at	E	E	CV234125	CV234125	NA	NA	NA	NA	AT1G60470.1	galactinol synthase 4 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g102770.1	"Glycosyl transferase, family 8 "	NA	NA	NA
PtpAffx.18853.1.A1_at	E	E	CV231158	CV231158	NA	NA	NA	NA	AT2G16405.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g56860.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.18860.3.S1_at	E	E	BP930603	BP930603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18895.1.A1_at	E	E	CV230031	CV230031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18981.1.S1_at	E	E	CV243233	CV243233	NA	NA	NA	NA	AT1G26665.1	"Mediator complex, subunit Med10 "	LOC_Os09g35920.2	"mediator of RNA polymerase II transcription subunit 10, putative, expressed"	Medtr4g133900.1	"Mediator of RNA polymerase II transcription subunit 10, related "	NA	NA	NA
PtpAffx.19057.1.S1_at	E	E	CX655642	CX655642	NA	NA	Q9STE8	"Protein TOC75-3, chloroplastic"	AT3G46740.1	translocon at the outer envelope membrane of chloroplasts 75-III 	LOC_Os03g16440.1	"outer membrane protein, OMP85 family, putative, expressed"	Medtr4g084320.1	"Bacterial surface antigen (D15); Chloroplast envelope protein translocase, IAP75 "	NA	NA	NA
PtpAffx.19271.2.S1_at	E	E	CF228533	CF228533	NA	NA	P38389	Protein transport protein Sec61 subunit beta	AT3G60540.2	"Preprotein translocase Sec, Sec61-beta subunit protein "	LOC_Os01g38510.1	"protein transport protein Sec61 subunit beta, putative"	Medtr4g134690.1	Sec61beta 	NA	NA	NA
PtpAffx.19371.2.A1_at	E	E	CV268055	CV268055	NA	NA	Q8BKC5	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	NA	NA	NA
PtpAffx.19429.1.A1_at	E	E	CV240610	CV240610	NA	NA	NA	NA	AT1G73840.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr4g158160.1	"proline-rich protein precursor, putative "	NA	NA	NA
PtpAffx.1951.1.S1_at	E	E	CK091718	CK091718	scaffold_9:8865702-8866239(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.19547.1.S1_s_at	E	E	CA925047	CA925047	scaffold_5:1233347-1233520(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.19592.1.S1_a_at	E	E	AJ574852.2	AJ574852.2	NA	NA	Q9XFS9	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic"	AT5G62790.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase 	LOC_Os01g01710.1	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed"	Medtr8g125620.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase; ; 	NA	NA	NA
PtpAffx.19592.3.S1_at	E	E	CA933638	CA933638	NA	NA	Q9XFS9	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic"	AT5G62790.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase 	LOC_Os01g01710.1	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed"	Medtr8g125620.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase; ; 	NA	NA	NA
PtpAffx.196.1.S1_at	E	E	CV228371	CV228371	scaffold_7:6499927-6499962(-) (11)	NA	P25325	3-mercaptopyruvate sulfurtransferase	AT1G79230.1	mercaptopyruvate sulfurtransferase 1 	LOC_Os12g41500.1	"rhodanese-like domain containing protein, putative, expressed"	AC233682_8.1	Thiosulfate sulfurtransferase AC233682.2 24214-17031 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.1963.1.A1_at	E	E	BU833907	BU833907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.198.1.S1_at	E	E	CV242920	CV242920	NA	NA	A4GYU4	"30S ribosomal protein S11, chloroplastic"	ATCG00750.1	ribosomal protein S11 	LOC_Os10g21342.1	"chloroplast 50S ribosomal protein L14, putative"	Medtr3g136120.1	Ribosomal protein S11 	NA	NA	NA
PtpAffx.1983.1.A1_at	E	E	CV268253	CV268253	NA	NA	Q9FKY5	MLO-like protein 10	AT5G65970.1	Seven transmembrane MLO family protein 	LOC_Os10g39520.1	"MLO domain containing protein, putative, expressed"	Medtr8g087610.1	Mlo-related protein 	NA	NA	NA
PtpAffx.19894.2.S1_at	E	E	CK109353	CK109353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.19965.2.A1_a_at	E	E	CV240376	CV240376	scaffold_18:11662123-11662426(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.19990.1.S1_at	E	E	CV278303	CV278303	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g008850.1	"CD2-binding protein-related, putative "	NA	NA	NA
PtpAffx.200001.1.S1_at	E	E	pmrna2	pmrna2	scaffold_1:3038869-3039558(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200002.1.S1_at	E	E	pmrna3	pmrna3	scaffold_1:3043487-3044021(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200079.1.S1_at	E	E	pmrna143	pmrna143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200085.1.S1_at	E	E	pmrna154	pmrna154	scaffold_1:5747615-5747865(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200089.1.S1_at	E	E	pmrna161	pmrna161	scaffold_1:5620333-5620783(-) (11)	NA	Q6RJS2	Deoxyhypusine synthase	AT5G05920.1	deoxyhypusine synthase 	LOC_Os03g52970.3	"deoxyhypusine synthase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.200111.1.S1_at	E	E	pmrna199	pmrna199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200160.1.S1_x_at	E	E	pmrna300	pmrna300	NA	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g14940.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.200197.1.S1_at	E	E	pmrna366	pmrna366	scaffold_1:11408878-11410896(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200211.1.S1_at	E	E	pmrna397	pmrna397	scaffold_1:11144441-11144640(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200211.1.S1_s_at	E	E	pmrna397	pmrna397	scaffold_1:11144264-11144494(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200246.1.S1_at	E	E	pmrna475	pmrna475	scaffold_1:10493925-10494408(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200264.1.S1_at	E	E	pmrna512	pmrna512	scaffold_2393:2179-2396(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	NA	NA	NA
PtpAffx.200284.1.S1_at	E	E	pmrna565	pmrna565	scaffold_1:9654016-9654618(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200336.1.S1_at	E	E	pmrna669	pmrna669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20034.1.S1_at	E	E	BI122896	BI122896	NA	NA	Q6NQ88	Protein DAMAGED DNA-BINDING 2	AT5G58760.1	damaged DNA binding 2 	LOC_Os01g04870.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g078770.1	WD40-like 	NA	NA	NA
PtpAffx.200344.1.S1_at	E	E	pmrna679	pmrna679	scaffold_1769:1463-3343(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g01840.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.200376.1.S1_at	E	E	pmrna753	pmrna753	scaffold_1:8128373-8128592(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200376.1.S1_x_at	E	E	pmrna753	pmrna753	scaffold_1:8128373-8128592(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200440.1.S1_at	E	E	pmrna886	pmrna886	scaffold_1:6908314-6908464(+) (11)	NA	P07052	Pathogenesis-related protein R minor form	AT4G11650.1	osmotin 34 	NA	NA	Medtr5g010810.1	"Thaumatin, pathogenesis-related "	NA	NA	NA
PtpAffx.200445.1.S1_at	E	E	pmrna896	pmrna896	NA	NA	O49399	Pentatricopeptide repeat-containing protein At4g18840	AT4G18840.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os03g07234.1	"pentatricopeptide, putative"	Medtr3g069190.1	Pentatricopeptide repeat 	NA	NA	NA
PtpAffx.200579.1.S1_at	E	E	pmrna1150	pmrna1150	scaffold_1:20077731-20078753(-) (11)//scaffold_611:71-1096(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	NA	NA	NA
PtpAffx.200603.1.S1_at	E	E	pmrna1187	pmrna1187	scaffold_1:19333476-19333783(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200623.1.S1_at	E	E	pmrna1216	pmrna1216	scaffold_1:15505601-15505833(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200627.1.S1_at	E	E	pmrna1220	pmrna1220	scaffold_1:15547292-15547567(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200636.1.S1_at	E	E	pmrna1237	pmrna1237	scaffold_1:15780103-15780401(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200636.1.S1_x_at	E	E	pmrna1237	pmrna1237	scaffold_1:15780082-15780463(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200682.1.S1_at	E	E	pmrna1327	pmrna1327	scaffold_1:20956906-20957048(-) (10)	NA	P46269	Cytochrome b-c1 complex subunit 8	AT3G10860.1	"Cytochrome b-c1 complex, subunit 8 protein "	LOC_Os06g07969.1	"cytochrome b-c1 complex subunit 8, putative, expressed"	Medtr5g083510.1	"Cytochrome b-c1 complex subunit 8 (exp=-1; wgp=-1; cg=-1; clo, putative "	NA	NA	NA
PtpAffx.200687.1.S1_at	E	E	pmrna1335	pmrna1335	scaffold_1:21157515-21157961(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200689.1.S1_at	E	E	pmrna1337	pmrna1337	scaffold_1:21227988-21228242(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200691.1.S1_at	E	E	pmrna1339	pmrna1339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200704.1.S1_at	E	E	pmrna1357	pmrna1357	scaffold_1:21562444-21562784(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200704.1.S1_s_at	E	E	pmrna1357	pmrna1357	scaffold_1:21562330-21562757(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200707.1.S1_at	E	E	pmrna1363	pmrna1363	scaffold_1:21614680-21615122(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200719.1.S1_at	E	E	pmrna1383	pmrna1383	NA	NA	NA	NA	AT5G03990.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g04280.1	conserved hypothetical protein	Medtr7g108020.1	RecA 	NA	NA	NA
PtpAffx.200721.1.S1_at	E	E	pmrna1388	pmrna1388	scaffold_1:25229716-25230542(-) (10)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os04g33410.1	"retrotransposon protein, putative, unclassified"	Medtr3g044270.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	NA	NA	NA
PtpAffx.200771.1.S1_at	E	E	pmrna1495	pmrna1495	scaffold_1:24312795-24313491(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200775.1.S1_at	E	E	pmrna1499	pmrna1499	scaffold_1:24293028-24293744(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200784.1.S1_at	E	E	pmrna1515	pmrna1515	scaffold_1:24120312-24121375(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g18770.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.20079.1.S1_at	E	E	CK091709	CK091709	scaffold_10:20767406-20767617(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200833.1.S1_x_at	E	E	pmrna1624	pmrna1624	scaffold_1:25636845-25637528(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200843.1.S1_at	E	E	pmrna1638	pmrna1638	scaffold_1:25881915-25882182(-) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os11g30110.1	"disease resistance RPP13-like protein 1, putative"	Medtr8g039540.1	NB-ARC 	NA	NA	NA
PtpAffx.200859.1.S1_at	E	E	pmrna1676	pmrna1676	scaffold_1:26204204-26205152(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200861.1.S1_at	E	E	pmrna1680	pmrna1680	scaffold_1:26252973-26253786(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g44720.1	"retrotransposon protein, putative, unclassified"	Medtr5g029030.1	"RNA-directed DNA polymerase (reverse transcriptase), related "	NA	NA	NA
PtpAffx.200922.1.S1_at	E	E	pmrna1818	pmrna1818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200925.1.S1_at	E	E	pmrna1822	pmrna1822	scaffold_1:27738301-27738623(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200942.1.S1_s_at	E	E	pmrna1853	pmrna1853	scaffold_1:33078798-33079310(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200946.1.S1_at	E	E	pmrna1861	pmrna1861	scaffold_1:33166554-33166852(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200948.1.S1_at	E	E	pmrna1863	pmrna1863	scaffold_1:33204001-33204264(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200948.1.S1_x_at	E	E	pmrna1863	pmrna1863	scaffold_1:33204001-33204264(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200983.1.S1_at	E	E	pmrna1937	pmrna1937	scaffold_1:34148318-34149341(+) (10)	NA	NA	NA	NA	NA	LOC_Os04g49300.1	"retrotransposon protein, putative, LINE subclass"	NA	NA	NA	NA	NA
PtpAffx.200995.1.S1_at	E	E	pmrna1958	pmrna1958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201025.1.S1_at	E	E	pmrna2007	pmrna2007	NA	NA	P63031	Brain protein 44-like protein	AT5G20090.3	Uncharacterised protein family (UPF0041) 	LOC_Os08g31830.1	"UPF0041 domain containing protein, putative, expressed"	Medtr2g029550.1	Protein of unknown function UPF0041 	NA	NA	NA
PtpAffx.201043.1.S1_at	E	E	pmrna2042	pmrna2042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201141.1.S1_at	E	E	pmrna2242	pmrna2242	NA	NA	NA	NA	AT5G09840.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os12g06560.1	expressed protein	Medtr3g144270.1	Protein of unknown function DUF537 	NA	NA	NA
PtpAffx.201159.1.S1_at	E	E	pmrna2278	pmrna2278	scaffold_1:29393215-29394004(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201161.1.S1_at	E	E	pmrna2283	pmrna2283	scaffold_1:29335660-29335922(+) (10)	NA	Q39211	DNA-directed RNA polymerase II subunit RPB3-A	AT2G15430.1	DNA-directed RNA polymerase family protein 	LOC_Os09g02284.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr4g114420.1	"RNA polymerase, dimerisation "	NA	NA	NA
PtpAffx.201168.1.S1_at	E	E	pmrna2299	pmrna2299	scaffold_1:29234225-29234380(+) (11)	NA	NA	NA	NA	NA	NA	NA	AC235671_6.1	"Virulence factor, pectin lyase fold AC235671.2 24486-26653 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.201218.1.S1_x_at	E	E	pmrna2421	pmrna2421	scaffold_1:28045430-28045933(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g33340.1	"retrotransposon protein, putative, Ty1-copia subclass"	NA	NA	NA	NA	NA
PtpAffx.201225.1.S1_s_at	E	E	pmrna2438	pmrna2438	scaffold_1:27897984-27899770(+) (9)	NA	Q9SZJ6	Agamous-like MADS-box protein AGL21	AT4G37940.1	AGAMOUS-like 21 	LOC_Os02g36924.1	"OsMADS27 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g136380.1	"Transcription factor, MADS-box; Transcription factor, K-box "	NA	NA	NA
PtpAffx.201227.1.S1_at	E	E	pmrna2440	pmrna2440	scaffold_1:27900096-27900252(+) (10)	NA	Q6EP49	MADS-box transcription factor 27	AT2G14210.1	AGAMOUS-like 44 	LOC_Os02g36924.1	"OsMADS27 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g032500.1	"Transcription factor, K-box "	NA	NA	NA
PtpAffx.201230.1.S1_at	E	E	pmrna2444	pmrna2444	NA	NA	Q6XKE6	Genome polyprotein	NA	NA	LOC_Os09g07640.1	"retrotransposon protein, putative, unclassified"	AC234026_1.1	RNA-directed DNA polymerase (Reverse transcriptase) AC234026.1 2154-4412 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.201233.1.S1_at	E	E	pmrna2448	pmrna2448	NA	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.3	aldehyde dehydrogenase  6B2 	NA	NA	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	NA	NA	NA
PtpAffx.201274.1.S1_at	E	E	pmrna2532	pmrna2532	scaffold_1:36332906-36334700(+) (11)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	LOC_Os12g09530.1	"retrotransposon protein, putative, unclassified"	Medtr3g162890.1	"RNA-directed DNA polymerase (reverse transcriptase), related "	NA	NA	NA
PtpAffx.201297.1.S1_at	E	E	pmrna2576	pmrna2576	scaffold_1:36939236-36939423(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g08772.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.201321.1.S1_s_at	E	E	pmrna2623	pmrna2623	scaffold_1:37501712-37501892(-) (11)	NA	A4GYW4	"NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic"	ATCG01010.1	"NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein "	LOC_Os10g21418.1	"NADPH-dependent oxidoreductase, putative"	Medtr7g021690.1	"NADH-plastoquinone oxidoreductase, chain 5 "	NA	NA	NA
PtpAffx.201336.1.S1_at	E	E	pmrna2651	pmrna2651	scaffold_1:37917789-37918359(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201343.1.S1_at	E	E	pmrna2661	pmrna2661	scaffold_1:38091159-38091275(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201343.1.S1_x_at	E	E	pmrna2661	pmrna2661	scaffold_1:38091159-38091368(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201379.1.S1_at	E	E	pmrna2721	pmrna2721	scaffold_1:42704139-42704667(+) (10)//scaffold_128:31675-32204(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.20147.1.A1_at	E	E	CK097860	CK097860	NA	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g021280.1	"Zinc finger, GATA-type "	NA	NA	NA
PtpAffx.201496.1.S1_at	E	E	pmrna2945	pmrna2945	scaffold_1:47750215-47750615(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2015.1.S1_at	E	E	CK095747	CK095747	NA	NA	P15479	Isocitrate lyase	AT3G21720.1	isocitrate lyase 	LOC_Os07g34520.2	"isocitrate lyase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.201502.1.S1_at	E	E	pmrna2958	pmrna2958	scaffold_2:2801-2953(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201503.1.S1_at	E	E	pmrna2962	pmrna2962	scaffold_2:32673-33273(+) (10)	NA	NA	NA	AT1G43760.1	DNAse I-like superfamily protein 	LOC_Os05g26730.1	"retrotransposon protein, putative, LINE subclass"	AC233655_32.1	RNA-directed DNA polymerase (Reverse transcriptase); Endonuclease/exonuclease/phosphatase AC233655.2 202219-200303 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.201504.1.S1_s_at	E	E	pmrna2963	pmrna2963	scaffold_2:37431-37808(+) (10)	NA	NA	NA	NA	NA	LOC_Os12g06010.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g029030.1	"RNA-directed DNA polymerase (reverse transcriptase), related "	NA	NA	NA
PtpAffx.201509.1.S1_s_at	E	E	pmrna2970	pmrna2970	scaffold_2:85764-85841(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201514.1.S1_at	E	E	pmrna2981	pmrna2981	scaffold_2:173505-174113(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201519.1.S1_at	E	E	pmrna2995	pmrna2995	scaffold_2:237674-237976(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201553.1.S1_at	E	E	pmrna3054	pmrna3054	scaffold_2:626278-626631(+) (11)	NA	Q94FT4	Salutaridinol 7-O-acetyltransferase	AT3G30280.1	HXXXD-type acyl-transferase family protein 	NA	NA	Medtr3g103100.1	Transferase 	NA	NA	NA
PtpAffx.201556.1.S1_at	E	E	pmrna3058	pmrna3058	NA	NA	Q54YA7	Pre-rRNA-processing protein TSR1 homolog	AT1G42440.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). "	LOC_Os11g19250.1	"AARP2CN domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.201573.1.S1_at	E	E	pmrna3091	pmrna3091	scaffold_2:851372-852023(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201574.1.S1_at	E	E	pmrna3092	pmrna3092	NA	NA	Q6CC39	tRNA pseudouridine synthase 1	AT1G76120.1	Pseudouridine synthase family protein 	LOC_Os02g44810.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr8g145890.1	tRNA pseudouridine synthase 	NA	NA	NA
PtpAffx.201631.1.S1_at	E	E	pmrna3231	pmrna3231	NA	NA	P82859	Agglutinin	AT1G19715.3	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.3	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	NA	NA	NA
PtpAffx.201653.1.S1_at	E	E	pmrna3281	pmrna3281	scaffold_2:2283301-2283756(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201680.1.S1_at	E	E	pmrna3348	pmrna3348	scaffold_2:2750481-2751418(-) (10)	NA	Q6NQ83	"Pentatricopeptide repeat-containing protein At3g22470, mitochondrial"	AT3G22470.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g35790.1	"Rf1, mitochondrial precursor, putative"	Medtr6g076650.1	Pentatricopeptide repeat 	NA	NA	NA
PtpAffx.201719.1.S1_at	E	E	pmrna3413	pmrna3413	scaffold_2:3267526-3268620(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201768.1.S1_at	E	E	pmrna3529	pmrna3529	scaffold_2:4195522-4195628(+) (11)	NA	NA	NA	AT5G13790.1	AGAMOUS-like 15 	NA	NA	Medtr2g111440.1	"Transcription factor, MADS-box "	NA	NA	NA
PtpAffx.201794.1.S1_at	E	E	pmrna3576	pmrna3576	scaffold_2:4555137-4556629(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr8g053420.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.201801.1.S1_s_at	E	E	pmrna3587	pmrna3587	scaffold_2:4646310-4646771(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201934.1.S1_s_at	E	E	pmrna3854	pmrna3854	scaffold_2:7133678-7133824(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201961.1.S1_at	E	E	pmrna3912	pmrna3912	scaffold_2:7621665-7621865(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201989.1.S1_s_at	E	E	pmrna3968	pmrna3968	scaffold_2:8223863-8223996(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202072.1.S1_at	E	E	pmrna4134	pmrna4134	scaffold_2:9680176-9681161(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20208.1.S1_at	E	E	BU872364	BU872364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202139.1.S1_at	E	E	pmrna4274	pmrna4274	scaffold_2:10741920-10742092(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202140.1.S1_at	E	E	pmrna4275	pmrna4275	scaffold_2:10757296-10757784(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g23890.1	"retrotransposon protein, putative, LINE subclass"	Medtr1g083260.1	"Non-LTR retroelement reverse transcriptase, related, putative "	NA	NA	NA
PtpAffx.202146.1.S1_at	E	E	pmrna4293	pmrna4293	scaffold_2:10907390-10908140(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202153.1.S1_s_at	E	E	pmrna4305	pmrna4305	scaffold_1:22661736-22662278(+) (11)//scaffold_15:2634731-2635241(+) (11)//scaffold_17:3201524-3202128(-) (11)//scaffold_19:3206784-3207418(+) (11)//scaffold_19:3207065-3215130(+) (11)//scaffold_2:10962830-10963461(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202175.1.S1_s_at	E	E	pmrna4346	pmrna4346	scaffold_2:11284415-11284962(+) (11)	NA	NA	NA	AT5G48050.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os06g13540.1	"retrotransposon protein, putative, unclassified"	Medtr7g123950.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.202201.1.S1_at	E	E	pmrna4399	pmrna4399	scaffold_2:11711636-11711967(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202202.1.S1_at	E	E	pmrna4400	pmrna4400	scaffold_2:11712142-11712262(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202202.1.S1_x_at	E	E	pmrna4400	pmrna4400	scaffold_2:11712129-11712275(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202293.1.S1_at	E	E	pmrna4585	pmrna4585	scaffold_2:13541001-13541774(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202330.1.S1_at	E	E	pmrna4666	pmrna4666	scaffold_2:14517396-14517865(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202338.1.S1_at	E	E	pmrna4688	pmrna4688	scaffold_2:16688624-16688788(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g068290.1	Pectinesterase inhibitor 	NA	NA	NA
PtpAffx.202368.1.S1_at	E	E	pmrna4753	pmrna4753	scaffold_2:15813787-15813969(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202416.1.S1_at	E	E	pmrna4852	pmrna4852	scaffold_2:14758882-14759418(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202417.1.S1_at	E	E	pmrna4853	pmrna4853	scaffold_2:14756745-14757099(-) (11)	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	Medtr2g010050.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.202473.1.S1_at	E	E	pmrna4958	pmrna4958	scaffold_2:18400139-18400599(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202542.1.S1_at	E	E	pmrna5093	pmrna5093	scaffold_17:1743011-1743579(-) (10)	NA	P10967	1-aminocyclopropane-1-carboxylate oxidase homolog	AT5G59540.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g10350.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed"	Medtr2g088220.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.202546.1.S1_at	E	E	pmrna5106	pmrna5106	scaffold_202:33299-33490(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202591.1.S1_at	E	E	pmrna5190	pmrna5190	scaffold_5:11682697-11682833(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202615.1.S1_at	E	E	pmrna5232	pmrna5232	scaffold_5:12002852-12002955(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr7g021880.2	Aldo/keto reductase 	NA	NA	NA
PtpAffx.202651.1.S1_at	E	E	pmrna5298	pmrna5298	NA	NA	NA	NA	AT5G48850.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g43040.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g064920.1	Tetratricopeptide-like helical 	NA	NA	NA
PtpAffx.202696.1.S1_at	E	E	pmrna5388	pmrna5388	scaffold_2:22307473-22307639(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202721.1.S1_at	E	E	pmrna5443	pmrna5443	scaffold_2:22834507-22835015(-) (11)	NA	P03554	Enzymatic polyprotein	NA	NA	LOC_Os07g12000.1	"retrotransposon protein, putative, unclassified"	Medtr2g011080.1	"Peptidase A3A, cauliflower mosaic virus, catalytic "	NA	NA	NA
PtpAffx.202757.1.S1_at	E	E	pmrna5501	pmrna5501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202765.1.S1_at	E	E	pmrna5510	pmrna5510	NA	NA	P0A3U1	Group II intron-encoded protein ltrA	ATMG00520.1	"Intron maturase, type II family protein "	NA	NA	Medtr1g007020.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase); Respiratory-chain NADH dehydrogenase, subunit 1 "	NA	NA	NA
PtpAffx.202770.1.S1_at	E	E	pmrna5515	pmrna5515	scaffold_71:7817-8399(+) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	NA	NA	LOC_Os05g24610.1	"retrotransposon protein, putative, LINE subclass"	Medtr7g068430.1	"RNA-directed DNA polymerase (reverse transcriptase), related "	NA	NA	NA
PtpAffx.202772.1.S1_at	E	E	pmrna5517	pmrna5517	scaffold_1:612014-612105(-) (9)//scaffold_1:48227147-48227232(-) (10)//scaffold_10:1275169-1275260(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202772.1.S1_s_at	E	E	pmrna5517	pmrna5517	scaffold_1:611597-612004(-) (11)//scaffold_1:48226727-48227131(-) (10)//scaffold_10:1275270-1275674(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202820.1.S1_at	E	E	pmrna5589	pmrna5589	scaffold_3:1472646-1472901(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20283.1.A1_at	E	E	CK092137	CK092137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202833.1.S1_at	E	E	pmrna5615	pmrna5615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202833.1.S1_x_at	E	E	pmrna5615	pmrna5615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202835.1.S1_s_at	E	E	pmrna5618	pmrna5618	scaffold_2177:2214-2708(-) (11)//scaffold_3:1788338-1788835(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g036180.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	NA	NA
PtpAffx.202838.1.S1_at	E	E	pmrna5624	pmrna5624	NA	NA	NA	NA	NA	NA	LOC_Os05g23990.1	"rp3 protein, putative, expressed"	Medtr8g012000.1	NB-ARC 	NA	NA	NA
PtpAffx.202849.1.S1_at	E	E	pmrna5639	pmrna5639	scaffold_27:57187-57473(-) (11)	NA	NA	NA	AT1G43760.1	DNAse I-like superfamily protein 	LOC_Os10g37170.1	"retrotransposon protein, putative, unclassified"	Medtr8g109710.1	"reverse transcriptase - beet retrotransposon, putative "	NA	NA	NA
PtpAffx.202849.1.S1_s_at	E	E	pmrna5639	pmrna5639	scaffold_1:610582-610989(-) (11)//scaffold_1:48225712-48226119(-) (11)//scaffold_10:1276282-1276689(+) (11)//scaffold_27:57208-57615(-) (11)//scaffold_71:57160-57567(-) (11)	NA	NA	NA	AT1G43760.1	DNAse I-like superfamily protein 	LOC_Os10g37170.1	"retrotransposon protein, putative, unclassified"	Medtr8g109710.1	"reverse transcriptase - beet retrotransposon, putative "	NA	NA	NA
PtpAffx.202865.1.S1_at	E	E	pmrna5669	pmrna5669	scaffold_3:4470664-4471004(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202870.1.S1_s_at	E	E	pmrna5675	pmrna5675	scaffold_1:43278946-43278981(-) (11)//scaffold_1:46105299-46105334(-) (11)//scaffold_11:3912535-3912570(-) (11)//scaffold_12:12531341-12531376(-) (11)//scaffold_14:13582975-13583008(-) (10)//scaffold_18:81659-81694(+) (11)//scaffold_271:21808-21843(-) (11)//scaffold_3:4379400-4379435(-) (11)//scaffold_3:12596469-12596504(-) (11)//scaffold_3:19901536-19901571(+) (10)//scaffold_31:236579-236614(-) (11)//scaffold_4:22702177-22702212(-) (11)//scaffold_4:22788673-22788708(-) (11)//scaffold_6:8417683-8417718(-) (11)//scaffold_6:21607158-21607193(-) (11)//scaffold_8:255038-255073(+) (11)//scaffold_8:12817460-12817495(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g05730.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	NA	NA	NA
PtpAffx.202870.1.S1_x_at	E	E	pmrna5675	pmrna5675	scaffold_3:4379385-4379637(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g05730.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	NA	NA	NA
PtpAffx.202876.1.S1_s_at	E	E	pmrna5682	pmrna5682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202876.1.S1_x_at	E	E	pmrna5682	pmrna5682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202885.1.S1_at	E	E	pmrna5701	pmrna5701	NA	NA	A4GYP8	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	LOC_Os04g16830.1	"DNA-directed RNA polymerase subunit beta, putative"	Medtr4g042160.1	"RNA polymerase Rpb1, domain 5 "	NA	NA	NA
PtpAffx.202885.1.S1_s_at	E	E	pmrna5701	pmrna5701	NA	NA	A4GYP8	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	LOC_Os04g16830.1	"DNA-directed RNA polymerase subunit beta, putative"	Medtr4g042160.1	"RNA polymerase Rpb1, domain 5 "	NA	NA	NA
PtpAffx.202924.1.S1_at	E	E	pmrna5786	pmrna5786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202940.1.S1_at	E	E	pmrna5815	pmrna5815	scaffold_3:6659621-6660497(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202942.1.S1_x_at	E	E	pmrna5820	pmrna5820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202950.1.S1_s_at	E	E	pmrna5837	pmrna5837	scaffold_3:6349450-6349998(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202969.1.S1_at	E	E	pmrna5877	pmrna5877	NA	NA	Q02964	Enzymatic polyprotein	NA	NA	LOC_Os02g16010.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g068710.1	"Peptidase A3A, cauliflower mosaic virus, catalytic "	NA	NA	NA
PtpAffx.202976.1.S1_s_at	E	E	pmrna5890	pmrna5890	scaffold_32:164313-164748(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202979.1.S1_at	E	E	pmrna5896	pmrna5896	scaffold_3:8273576-8274003(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g67690.1	"retrotransposon protein, putative, Ty1-copia subclass"	NA	NA	NA	NA	NA
PtpAffx.203002.1.S1_at	E	E	pmrna5945	pmrna5945	NA	NA	Q02964	Enzymatic polyprotein	NA	NA	LOC_Os12g42720.1	"retrotransposon protein, putative, unclassified"	Medtr5g062290.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.203003.1.S1_at	E	E	pmrna5946	pmrna5946	NA	NA	Q00966	Movement protein	NA	NA	NA	NA	Medtr6g083560.1	Tobamoviral movement protein; Ribosomal protein L9 N-terminal-like 	NA	NA	NA
PtpAffx.203165.1.S1_at	E	E	pmrna6273	pmrna6273	scaffold_3:11852509-11852709(+) (9)	NA	NA	NA	AT5G47580.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203222.1.S1_at	E	E	pmrna6385	pmrna6385	scaffold_3:12918671-12919263(+) (10)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT5G42905.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	NA	NA	Medtr1g010300.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.203242.1.S1_x_at	E	E	pmrna6424	pmrna6424	scaffold_3:13215519-13215609(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203364.1.S1_at	E	E	pmrna6694	pmrna6694	scaffold_3:15377906-15378213(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203394.1.S1_at	E	E	pmrna6752	pmrna6752	scaffold_3:15802368-15802532(-) (11)	NA	NA	NA	AT3G07800.1	Thymidine kinase 	LOC_Os03g02200.2	"thymidine kinase, putative, expressed"	Medtr2g030300.1	Thymidine kinase 	NA	NA	NA
PtpAffx.203404.1.S1_at	E	E	pmrna6767	pmrna6767	scaffold_3:15941344-15941502(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203459.1.S1_s_at	E	E	pmrna6893	pmrna6893	scaffold_12:96192-96333(-) (11)//scaffold_3:10615836-10615936(+) (10)//scaffold_3:17064481-17064622(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g156460.1	"Ribonuclease H, putative "	NA	NA	NA
PtpAffx.20349.1.A1_at	E	E	CK088703	CK088703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203572.1.S1_at	E	E	pmrna7098	pmrna7098	scaffold_3:17953251-17953914(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr3g103760.1	Ribonuclease H 	NA	NA	NA
PtpAffx.203639.1.S1_at	E	E	pmrna7220	pmrna7220	scaffold_3:19622711-19622871(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203642.1.S1_at	E	E	pmrna7226	pmrna7226	NA	NA	Q6QNM1	Casein kinase I	AT3G13670.1	Protein kinase family protein 	LOC_Os01g54100.1	"CK1_CaseinKinase_1a.2 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g005760.1	Protein kinase 	NA	NA	NA
PtpAffx.203673.1.S1_at	E	E	pmrna7276	pmrna7276	NA	NA	NA	NA	AT1G64570.1	Homeodomain-like superfamily protein 	LOC_Os03g46950.1	"DNA binding protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.203682.1.S1_at	E	E	pmrna7291	pmrna7291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203684.1.S1_at	E	E	pmrna7298	pmrna7298	scaffold_4:1022243-1022794(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203723.1.S1_at	E	E	pmrna7361	pmrna7361	NA	NA	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os04g54140.1	"receptor-like kinase, putative, expressed"	Medtr4g124620.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	NA	NA	NA
PtpAffx.203741.1.S1_at	E	E	pmrna7395	pmrna7395	scaffold_4:2146360-2146514(+) (11)	NA	NA	NA	AT1G56290.1	CwfJ-like family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203741.1.S1_x_at	E	E	pmrna7395	pmrna7395	scaffold_4:2146360-2146514(+) (11)	NA	NA	NA	AT1G56290.1	CwfJ-like family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203790.1.S1_at	E	E	pmrna7484	pmrna7484	scaffold_4:5334061-5334398(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203790.1.S1_s_at	E	E	pmrna7484	pmrna7484	scaffold_4:5334111-5334333(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203843.1.S1_at	E	E	pmrna7586	pmrna7586	scaffold_4:4178659-4178884(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20385.1.S1_at	E	E	BU811486	BU811486	NA	NA	NA	NA	AT1G65280.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g33800.2	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.203974.1.S1_at	E	E	pmrna7838	pmrna7838	scaffold_4:7286192-7286930(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203994.1.S1_at	E	E	pmrna7881	pmrna7881	scaffold_4:6706127-6706785(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.204004.1.S1_at	E	E	pmrna7896	pmrna7896	scaffold_4:6539078-6540320(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204027.1.S1_at	E	E	pmrna7938	pmrna7938	scaffold_4:6144147-6144283(+) (11)//scaffold_4:6158477-6158607(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204058.1.S1_at	E	E	pmrna8004	pmrna8004	scaffold_4:8933993-8934184(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204061.1.S1_at	E	E	pmrna8008	pmrna8008	scaffold_4:8978038-8978498(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204061.1.S1_x_at	E	E	pmrna8008	pmrna8008	scaffold_4:8978038-8978498(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204082.1.S1_x_at	E	E	pmrna8059	pmrna8059	NA	NA	A4GYR0	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g21250.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.204088.1.S1_at	E	E	pmrna8066	pmrna8066	NA	NA	NA	NA	NA	NA	LOC_Os06g49350.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr7g123950.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.204101.1.S1_at	E	E	pmrna8092	pmrna8092	scaffold_4:14141078-14141244(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204102.1.S1_x_at	E	E	pmrna8093	pmrna8093	scaffold_4:14239025-14239261(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204104.1.S1_at	E	E	pmrna8097	pmrna8097	scaffold_4:14349417-14349810(+) (11)	NA	P0A3U1	Group II intron-encoded protein ltrA	AT1G30010.1	"Intron maturase, type II family protein "	LOC_Os12g21870.1	"type II intron maturase protein, putative, expressed"	Medtr2g024700.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	NA	NA	NA
PtpAffx.204138.1.S1_at	E	E	pmrna8156	pmrna8156	scaffold_4:6961722-6967978(-) (9)//scaffold_4:11071800-11073838(+) (9)	NA	NA	NA	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os03g49420.4	"HEAT repeat family protein, putative, expressed"	Medtr7g102560.1	Armadillo-like helical 	NA	NA	NA
PtpAffx.204177.1.S1_at	E	E	pmrna8226	pmrna8226	scaffold_4:10647729-10648264(-) (11)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os12g15720.1	"retrotransposon protein, putative, unclassified"	Medtr6g077130.1	"Zinc finger, CCHC-type "	NA	NA	NA
PtpAffx.204185.1.S1_at	E	E	pmrna8238	pmrna8238	scaffold_4:10748550-10749265(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204187.1.S1_at	E	E	pmrna8245	pmrna8245	scaffold_4:16233036-16234170(-) (9)	NA	Q9XIA9	Long chain acyl-CoA synthetase 2	AT1G49430.1	long-chain acyl-CoA synthetase 2 	LOC_Os11g35400.1	"AMP-binding enzyme, putative, expressed"	Medtr5g009390.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.204190.1.S1_at	E	E	pmrna8250	pmrna8250	scaffold_4:16251611-16252202(+) (10)	NA	NA	NA	NA	NA	LOC_Os05g45550.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.204235.1.S1_at	E	E	pmrna8327	pmrna8327	scaffold_4:17013831-17014007(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204235.1.S1_s_at	E	E	pmrna8327	pmrna8327	scaffold_4:17013932-17014290(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204301.1.S1_at	E	E	pmrna8462	pmrna8462	scaffold_4:18010894-18011036(-) (11)	NA	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os02g01210.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	NA	NA	NA
PtpAffx.204379.1.S1_at	E	E	pmrna8602	pmrna8602	scaffold_9:12678746-12679039(-) (10)	NA	NA	NA	NA	NA	LOC_Os12g44200.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.204387.1.S1_at	E	E	pmrna8612	pmrna8612	scaffold_9:12634927-12635187(-) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204412.1.S1_at	E	E	pmrna8669	pmrna8669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204431.1.S1_at	E	E	pmrna8706	pmrna8706	scaffold_9:12123151-12123809(-) (10)	NA	NA	NA	AT3G13020.1	hAT transposon superfamily protein 	LOC_Os06g49050.1	"hAT dimerisation domain containing protein, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
PtpAffx.204466.1.S1_at	E	E	pmrna8755	pmrna8755	scaffold_9:11797550-11798034(-) (11)	NA	NA	NA	AT3G17450.1	hAT dimerisation domain-containing protein 	LOC_Os08g19870.1	"transposon protein, putative, Ac/Ds sub-class"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
PtpAffx.204505.1.S1_at	E	E	pmrna8839	pmrna8839	scaffold_9:11156418-11157961(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204509.1.S1_at	E	E	pmrna8847	pmrna8847	scaffold_9:11102254-11102918(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204515.1.S1_at	E	E	pmrna8859	pmrna8859	scaffold_9:11043565-11044031(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204519.1.S1_at	E	E	pmrna8868	pmrna8868	scaffold_9:10970748-10971006(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204535.1.S1_x_at	E	E	pmrna8901	pmrna8901	scaffold_1:17176262-17176580(+) (9)//scaffold_1:21959101-21959421(-) (11)//scaffold_1:22964544-22964864(-) (11)//scaffold_10:1994120-1994440(+) (10)//scaffold_1152:3638-3958(+) (11)//scaffold_12:1293306-1293626(+) (11)//scaffold_14:4039393-4039713(+) (10)//scaffold_17:1711248-1711568(-) (11)//scaffold_17:7943462-7943782(+) (11)//scaffold_178:22285-22605(-) (11)//scaffold_18:3679377-3679697(+) (11)//scaffold_18:10385154-10385474(+) (11)//scaffold_4:1429147-1429467(-) (11)//scaffold_5:17094405-17094701(+) (10)//scaffold_60:35962-36282(-) (10)//scaffold_739:7376-7696(-) (11)//scaffold_739:12234-12530(-) (10)//scaffold_8:426455-426775(+) (11)//scaffold_9:10777584-10777904(-) (11)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os02g37790.1	"retrotransposon protein, putative, unclassified"	Medtr6g077130.1	"Zinc finger, CCHC-type "	NA	NA	NA
PtpAffx.204563.1.S1_at	E	E	pmrna8958	pmrna8958	scaffold_9:10468613-10469193(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.20459.1.S1_at	E	E	CV258885	CV258885	NA	NA	O22827	Molybdopterin synthase catalytic subunit	AT2G43760.3	molybdopterin biosynthesis MoaE family protein 	LOC_Os02g04740.1	"molybdenum cofactor synthesis protein 2 large subunit, putative, expressed"	Medtr3g058670.1	Molybdopterin biosynthesis MoaE 	NA	NA	NA
PtpAffx.204634.1.S1_at	E	E	pmrna9109	pmrna9109	scaffold_9:9514178-9514379(-) (11)	NA	NA	NA	AT1G43760.1	DNAse I-like superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204696.1.S1_at	E	E	pmrna9252	pmrna9252	scaffold_9:8570999-8571167(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204721.1.S1_at	E	E	pmrna9302	pmrna9302	scaffold_9:8281439-8282114(+) (11)	NA	NA	NA	AT5G61090.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	NA	NA	Medtr3g147880.1	Ribonuclease H 	NA	NA	NA
PtpAffx.204755.1.S1_at	E	E	pmrna9358	pmrna9358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2048.6.A1_at	E	E	CK092780	CK092780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2048.7.S1_at	E	E	CV248219	CV248219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204804.1.S1_at	E	E	pmrna9468	pmrna9468	scaffold_9:7067326-7067521(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204827.1.S1_at	E	E	pmrna9521	pmrna9521	scaffold_9:6607748-6607873(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204830.1.S1_at	E	E	pmrna9527	pmrna9527	scaffold_9:6558063-6558309(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204905.1.S1_at	E	E	pmrna9696	pmrna9696	scaffold_9:5274583-5274838(+) (10)	NA	NA	NA	NA	NA	LOC_Os03g05340.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	NA	NA	NA
PtpAffx.204965.1.S1_at	E	E	pmrna9818	pmrna9818	scaffold_9:4375062-4375238(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205026.1.S1_at	E	E	pmrna9950	pmrna9950	scaffold_9:3175179-3175448(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205026.1.S1_s_at	E	E	pmrna9950	pmrna9950	scaffold_9:3175115-3175425(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205033.1.S1_at	E	E	pmrna9971	pmrna9971	NA	NA	Q0ZJ24	Photosystem II CP43 chlorophyll apoprotein	ATCG00280.1	photosystem II reaction center protein C 	LOC_Os02g24632.1	"photosystem II 44 kDa reaction center protein, putative, expressed"	Medtr7g014910.1	Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.205038.1.S1_at	E	E	pmrna9976	pmrna9976	scaffold_9:2786761-2788040(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205072.1.S1_at	E	E	pmrna10050	pmrna10050	scaffold_9:1470944-1471850(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205121.1.S1_at	E	E	pmrna10140	pmrna10140	scaffold_5:4325548-4326047(+) (11)	NA	P0A3U1	Group II intron-encoded protein ltrA	AT1G74350.1	"Intron maturase, type II family protein "	LOC_Os06g42770.1	"type II intron maturase protein, putative, expressed"	Medtr3g005050.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	NA	NA	NA
PtpAffx.205142.1.S1_at	E	E	pmrna10179	pmrna10179	scaffold_5:4628684-4629081(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205273.1.S1_at	E	E	pmrna10457	pmrna10457	scaffold_5:7054192-7054827(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr1g084160.1	Ribonuclease H 	NA	NA	NA
PtpAffx.205279.1.S1_at	E	E	pmrna10465	pmrna10465	NA	NA	P0C1I6	Peptidyl-prolyl cis-trans isomerase-like 4	AT1G53720.1	cyclophilin 59 	LOC_Os06g45910.1	"peptidyl-prolyl cis-trans isomerase-like 4, putative, expressed"	Medtr6g028110.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type; Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	NA	NA
PtpAffx.205329.1.S1_s_at	E	E	pmrna10555	pmrna10555	scaffold_5:11080518-11080703(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205332.1.S1_at	E	E	pmrna10559	pmrna10559	scaffold_5:11118621-11118883(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205338.1.S1_at	E	E	pmrna10569	pmrna10569	scaffold_5:11274150-11275425(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205409.1.S1_at	E	E	pmrna10707	pmrna10707	scaffold_5:18105960-18106351(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205414.1.S1_at	E	E	pmrna10717	pmrna10717	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr3g043730.1	"Protein ycf2, putative "	NA	NA	NA
PtpAffx.205425.1.S1_at	E	E	pmrna10731	pmrna10731	scaffold_5:18437836-18437983(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205437.1.S1_at	E	E	pmrna10749	pmrna10749	scaffold_5:15833221-15834086(+) (10)	NA	NA	NA	NA	NA	LOC_Os05g15220.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	NA	NA	NA
PtpAffx.205442.1.S1_at	E	E	pmrna10761	pmrna10761	scaffold_5:15541512-15541613(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205442.1.S1_x_at	E	E	pmrna10761	pmrna10761	scaffold_5:15541433-15541613(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205446.1.S1_at	E	E	pmrna10769	pmrna10769	scaffold_5:15391452-15392356(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205449.1.S1_at	E	E	pmrna10776	pmrna10776	scaffold_5:15196249-15196836(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205463.1.S1_at	E	E	pmrna10797	pmrna10797	scaffold_5:14766998-14767255(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g15079.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.20548.1.A1_at	E	E	CV228406	CV228406	scaffold_7:3987302-3987738(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205485.1.S1_at	E	E	pmrna10849	pmrna10849	NA	NA	Q9SGZ5	Probable beta-D-xylosidase 7	AT1G78060.1	Glycosyl hydrolase family protein 	LOC_Os02g51620.1	"glycosyl hydrolase family 3 protein, putative, expressed"	CU651566_9.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal CU651566.9 51724-46198 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.205645.1.S1_at	E	E	pmrna11150	pmrna11150	scaffold_5:21177107-21177514(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205652.1.S1_at	E	E	pmrna11161	pmrna11161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205662.1.S1_at	E	E	pmrna11178	pmrna11178	scaffold_5:21430437-21431361(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205677.1.S1_at	E	E	pmrna11212	pmrna11212	scaffold_5:21728832-21729431(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205678.1.S1_at	E	E	pmrna11213	pmrna11213	scaffold_5:21730304-21730484(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205770.1.S1_at	E	E	pmrna11404	pmrna11404	scaffold_5:23308058-23310858(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g116840.1	Pre-SET; Histone H3-K9 methyltransferase 	NA	NA	NA
PtpAffx.205800.1.S1_at	E	E	pmrna11463	pmrna11463	scaffold_5:23688223-23688513(-) (10)	NA	Q43636	Thioredoxin H-type	AT3G51030.1	thioredoxin H-type 1 	NA	NA	Medtr1g028610.1	Thioredoxin-related; Thioredoxin domain 2; 	NA	NA	NA
PtpAffx.205801.1.S1_at	E	E	pmrna11468	pmrna11468	scaffold_5:23712534-23713196(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205803.1.S1_at	E	E	pmrna11471	pmrna11471	scaffold_5:23726170-23726309(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205803.1.S1_x_at	E	E	pmrna11471	pmrna11471	scaffold_5:23726149-23726309(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205807.1.S1_at	E	E	pmrna11478	pmrna11478	scaffold_5:23807634-23807846(+) (10)	NA	P23706	Floral homeotic protein DEFICIENS	NA	NA	NA	NA	Medtr3g154110.1	"Transcription factor, MADS-box; Transcription factor, K-box "	NA	NA	NA
PtpAffx.205863.1.S1_at	E	E	pmrna11624	pmrna11624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205887.1.S1_at	E	E	pmrna11669	pmrna11669	scaffold_5:25135943-25136116(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205909.1.S1_at	E	E	pmrna11717	pmrna11717	scaffold_5:25422903-25423080(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205914.1.S1_at	E	E	pmrna11731	pmrna11731	scaffold_5:25499610-25500220(-) (11)	NA	NA	NA	AT5G25070.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g40450.1	"uvrB/uvrC motif family protein, expressed"	AC151525_29.1	hypothetical protein AC151525.18 152102-148754 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.206018.1.S1_at	E	E	pmrna11926	pmrna11926	scaffold_6:1701374-1701614(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206027.1.S1_at	E	E	pmrna11946	pmrna11946	scaffold_6:1820060-1820617(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	NA	NA	NA
PtpAffx.206045.1.S1_at	E	E	pmrna11981	pmrna11981	NA	NA	Q6R8G3	Phosphate transporter PHO1 homolog 7	AT1G26730.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os06g29790.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	NA
PtpAffx.206057.1.S1_at	E	E	pmrna12005	pmrna12005	scaffold_6:2334569-2335571(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206082.1.S1_at	E	E	pmrna12048	pmrna12048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206088.1.S1_at	E	E	pmrna12058	pmrna12058	scaffold_6:2883107-2883620(-) (11)	NA	P03876	Putative COX1/OXI3 intron 2 protein	AT5G04050.1	RNA-directed DNA polymerase (reverse transcriptase) 	LOC_Os06g44880.1	"type II intron maturase protein, putative"	Medtr4g128460.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	NA	NA	NA
PtpAffx.206093.1.S1_at	E	E	pmrna12072	pmrna12072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206128.1.S1_at	E	E	pmrna12157	pmrna12157	scaffold_6:3678779-3678933(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr5g026800.1	Na+/solute symporter 	NA	NA	NA
PtpAffx.206148.1.S1_at	E	E	pmrna12196	pmrna12196	scaffold_6:4623068-4623536(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206179.1.S1_at	E	E	pmrna12266	pmrna12266	scaffold_6:5225526-5225751(+) (11)	NA	P26861	"60S ribosomal protein L6, mitochondrial"	AT2G18400.1	ribosomal protein L6 family protein 	LOC_Os03g51510.3	"ribosomal protein L6, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.206186.1.S1_at	E	E	pmrna12280	pmrna12280	NA	NA	Q2HIV9	Transcription factor bHLH35	AT5G57150.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g23550.2	"basic helix-loop-helix family protein, putative, expressed"	Medtr2g042780.1	Helix-loop-helix DNA-binding 	NA	NA	NA
PtpAffx.206202.1.S1_at	E	E	pmrna12319	pmrna12319	scaffold_6:5720829-5722769(-) (9)	NA	NA	NA	AT5G20310.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206212.1.S1_at	E	E	pmrna12334	pmrna12334	scaffold_6:5830294-5831487(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206218.1.S1_at	E	E	pmrna12346	pmrna12346	NA	NA	O48809	Leucine-rich repeat extensin-like protein 2	AT1G62440.1	leucine-rich repeat/extensin 2 	LOC_Os01g08470.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g158630.1	"leucine-rich repeat family protein, putative "	NA	NA	NA
PtpAffx.206267.1.S1_at	E	E	pmrna12431	pmrna12431	scaffold_6:6725460-6725594(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206276.1.S1_at	E	E	pmrna12443	pmrna12443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206295.1.S1_at	E	E	pmrna12481	pmrna12481	NA	NA	A4GYQ0	DNA-directed RNA polymerase subunit beta	ATCG00190.1	RNA polymerase subunit beta 	LOC_Os05g22860.1	"DNA-directed RNA polymerase subunit beta, putative"	Medtr4g006480.1	"Immunoglobulin/major histocompatibility complex; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb2, domain 7 "	NA	NA	NA
PtpAffx.206296.1.S1_s_at	E	E	pmrna12483	pmrna12483	scaffold_6:7063861-7064228(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206304.1.S1_at	E	E	pmrna12506	pmrna12506	scaffold_6:7265699-7266277(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206305.1.S1_at	E	E	pmrna12509	pmrna12509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206361.1.S1_at	E	E	pmrna12628	pmrna12628	scaffold_6:8389752-8389928(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206389.1.S1_at	E	E	pmrna12690	pmrna12690	scaffold_6:12821930-12822220(+) (10)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr3g058900.1	"Zinc finger, CCHC-type "	NA	NA	NA
PtpAffx.206400.1.S1_at	E	E	pmrna12711	pmrna12711	NA	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.206405.1.S1_at	E	E	pmrna12727	pmrna12727	scaffold_6:13657407-13657610(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206445.1.S1_at	E	E	pmrna12789	pmrna12789	NA	NA	Q9QXP4	Protein downstream neighbor of Son	AT3G54750.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. 	LOC_Os12g42700.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.206454.1.S1_at	E	E	pmrna12805	pmrna12805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206475.1.S1_at	E	E	pmrna12840	pmrna12840	scaffold_6:19855907-19856301(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206558.1.S1_a_at	E	E	pmrna13007	pmrna13007	scaffold_10:19237270-19237544(-) (11)//scaffold_10:19237430-19237682(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206564.1.S1_at	E	E	pmrna13015	pmrna13015	scaffold_6:17677383-17678327(+) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT3G24255.1	RNA-directed DNA polymerase (reverse transcriptase)-related family protein 	LOC_Os12g36390.1	"retrotransposon protein, putative, unclassified"	Medtr8g053420.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.206576.1.S1_at	E	E	pmrna13046	pmrna13046	NA	NA	NA	NA	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	NA	NA	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.206578.1.S1_x_at	E	E	pmrna13049	pmrna13049	scaffold_6:21403057-21403542(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206579.1.S1_at	E	E	pmrna13050	pmrna13050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206579.1.S1_x_at	E	E	pmrna13050	pmrna13050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206617.1.S1_at	E	E	pmrna13139	pmrna13139	scaffold_6:22103952-22105172(-) (10)	NA	NA	NA	AT3G43300.1	HOPM interactor 7 	LOC_Os07g37750.1	"ATMIN7, putative, expressed"	Medtr8g133450.1	"guanine nucleotide-exchange-like protein, putative "	NA	NA	NA
PtpAffx.20668.1.S1_a_at	E	E	CV249644	CV249644	scaffold_1248:3771-3805(+) (11)//scaffold_15:12623655-12623689(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20668.1.S1_at	E	E	CV249644	CV249644	scaffold_15:12623300-12623820(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20668.2.S1_at	E	E	DN486869	DN486869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206772.1.S1_s_at	E	E	pmrna13446	pmrna13446	scaffold_6:24805443-24805585(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206787.1.S1_at	E	E	pmrna13472	pmrna13472	scaffold_6:24969319-24969453(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206794.1.S1_at	E	E	pmrna13487	pmrna13487	scaffold_6:25075496-25075926(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206794.1.S1_s_at	E	E	pmrna13487	pmrna13487	scaffold_6:25075435-25075664(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206855.1.S1_at	E	E	pmrna13619	pmrna13619	scaffold_2:5226746-5226896(+) (9)	NA	Q9LFN8	Glutamate receptor 2.6	AT5G11180.1	glutamate receptor 2.6 	NA	NA	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	NA	NA
PtpAffx.206859.1.S1_at	E	E	pmrna13624	pmrna13624	scaffold_157:7519-7908(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.206867.1.S1_at	E	E	pmrna13633	pmrna13633	NA	NA	Q9LRR5	Putative disease resistance protein At3g14460	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os01g25740.1	"powdery mildew resistance protein PM3F, putative, expressed"	Medtr5g028420.1	NB-ARC 	NA	NA	NA
PtpAffx.206868.1.S1_at	E	E	pmrna13638	pmrna13638	NA	NA	A8MQA3	Pentatricopeptide repeat-containing protein At4g21065	AT4G21065.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr6g030720.1	Pentatricopeptide repeat 	NA	NA	NA
PtpAffx.206880.1.S1_s_at	E	E	pmrna13662	pmrna13662	scaffold_7:199647-200326(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206883.1.S1_at	E	E	pmrna13665	pmrna13665	scaffold_7:244187-244413(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206897.1.S1_at	E	E	pmrna13692	pmrna13692	scaffold_7:490008-490201(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206904.1.S1_s_at	E	E	pmrna13704	pmrna13704	scaffold_7:565989-566594(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206911.1.S1_at	E	E	pmrna13722	pmrna13722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206911.1.S1_x_at	E	E	pmrna13722	pmrna13722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206914.1.S1_at	E	E	pmrna13731	pmrna13731	scaffold_7:718048-718386(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	NA	NA	NA
PtpAffx.206934.1.S1_at	E	E	pmrna13758	pmrna13758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206975.1.S1_a_at	E	E	pmrna13823	pmrna13823	scaffold_7:1386689-1386822(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206975.1.S1_at	E	E	pmrna13823	pmrna13823	scaffold_7:1386189-1387243(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206983.1.S1_at	E	E	pmrna13833	pmrna13833	NA	NA	Q9FND9	Probable galactinol--sucrose galactosyltransferase 5	AT5G40390.1	Raffinose synthase family protein 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr3g114540.1	Raffinose synthase 	NA	NA	NA
PtpAffx.206987.1.S1_at	E	E	pmrna13841	pmrna13841	scaffold_7:1514799-1514988(+) (11)	NA	Q9M9L0	Anaphase-promoting complex subunit 11	AT3G05870.2	anaphase-promoting complex/cyclosome 11 	LOC_Os07g22840.1	"anaphase-promoting complex subunit 11, putative"	Medtr7g005580.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.20709.1.S1_at	E	E	BU884860	BU884860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207092.1.S1_at	E	E	pmrna14057	pmrna14057	NA	NA	NA	NA	NA	NA	LOC_Os12g01574.1	expressed protein	Medtr2g055660.2	hypothetical protein 	NA	NA	NA
PtpAffx.207114.1.S1_at	E	E	pmrna14106	pmrna14106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207139.1.S1_at	E	E	pmrna14165	pmrna14165	scaffold_7:4562019-4562730(+) (10)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.207168.1.S1_at	E	E	pmrna14218	pmrna14218	scaffold_7:5207326-5207810(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g088060.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.207179.1.S1_at	E	E	pmrna14244	pmrna14244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207182.1.S1_s_at	E	E	pmrna14249	pmrna14249	scaffold_11:1163641-1163897(-) (11)//scaffold_11:11725201-11725457(+) (11)//scaffold_14:484209-484465(-) (11)//scaffold_14:2194400-2194656(-) (11)//scaffold_18:13793325-13793578(+) (9)//scaffold_19:124125-124340(+) (10)//scaffold_19:14974809-14975063(+) (9)//scaffold_6:26161451-26161707(+) (11)//scaffold_7:5642886-5643129(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.207198.1.S1_at	E	E	pmrna14285	pmrna14285	scaffold_7:6212540-6212665(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2072.1.A1_at	E	E	CK097942	CK097942	NA	NA	O24308	DNA topoisomerase 2	NA	NA	NA	NA	Medtr3g030000.1	DNA gyrase B; ; ; ; 	NA	NA	NA
PtpAffx.207263.1.S1_at	E	E	pmrna14407	pmrna14407	scaffold_7:11041355-11041488(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207268.1.S1_s_at	E	E	pmrna14418	pmrna14418	scaffold_7:11207981-11208432(-) (10)	NA	NA	NA	AT4G36970.1	Remorin family protein 	LOC_Os02g52810.2	"remorin C-terminal domain containing protein, putative, expressed"	CU571152_24.1	"Remorin, C-terminal region CU571152.5 111557-113744 F EGN_Mt090430 200"	NA	NA	NA
PtpAffx.207281.1.S1_at	E	E	pmrna14447	pmrna14447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207282.1.S1_at	E	E	pmrna14450	pmrna14450	NA	NA	Q9C566	Peptidyl-prolyl cis-trans isomerase CYP40	AT2G15790.1	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase 	LOC_Os06g11320.2	"peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed"	Medtr4g129080.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; "	NA	NA	NA
PtpAffx.207290.1.S1_at	E	E	pmrna14462	pmrna14462	scaffold_34:21817-22373(+) (9)//scaffold_7:11907054-11907610(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207292.1.S1_at	E	E	pmrna14464	pmrna14464	scaffold_7:11941293-11941611(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207295.1.S1_at	E	E	pmrna14469	pmrna14469	scaffold_7:11974925-11975933(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207315.1.S1_s_at	E	E	pmrna14500	pmrna14500	scaffold_7:12290489-12290825(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207346.1.S1_at	E	E	pmrna14578	pmrna14578	NA	NA	NA	NA	AT2G20120.1	Protein of unknown function (DUF502) 	LOC_Os12g29750.1	"protein of unknown function DUF502 domain containing protein, expressed"	Medtr4g158980.2	Protein of unknown function DUF502 	NA	NA	NA
PtpAffx.207357.1.S1_at	E	E	pmrna14595	pmrna14595	scaffold_7:13101407-13101554(-) (11)	NA	Q7PC69	Probable xyloglucan glycosyltransferase 3	AT3G28180.1	Cellulose-synthase-like C4 	LOC_Os09g25900.1	"CSLC2 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	NA	NA	NA
PtpAffx.20736.1.S1_at	E	E	BP932567	BP932567	NA	NA	A4GYN9	Photosystem Q(B) protein	ATCG00020.1	photosystem II reaction center protein A 	LOC_Os10g21192.1	"photosystem Q, putative"	Medtr7g021710.1	Photosystem II reaction centre protein PsbA/D1 	NA	NA	NA
PtpAffx.207398.1.S1_at	E	E	pmrna14680	pmrna14680	scaffold_7:13743900-13744541(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207461.1.S1_at	E	E	pmrna14809	pmrna14809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207474.1.S1_at	E	E	pmrna14834	pmrna14834	scaffold_8:114344-115604(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207531.1.S1_at	E	E	pmrna14948	pmrna14948	NA	NA	NA	NA	NA	NA	LOC_Os07g35060.2	"OsFBX238 - F-box domain containing protein, expressed"	Medtr3g058860.1	Cyclin-like F-box 	NA	NA	NA
PtpAffx.207544.1.S1_at	E	E	pmrna14973	pmrna14973	NA	NA	Q9FG21	Putative RING-H2 finger protein ATL71	AT5G06490.1	RING/U-box superfamily protein 	LOC_Os03g57410.1	"RING-H2 finger protein ATL5D, putative, expressed"	Medtr1g149630.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.207586.1.S1_at	E	E	pmrna15055	pmrna15055	scaffold_8:1402299-1402430(+) (11)	NA	NA	NA	AT2G36580.1	Pyruvate kinase family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207588.1.S1_at	E	E	pmrna15059	pmrna15059	NA	NA	P29136	Metalloendoproteinase 1	AT1G59970.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr6g009200.1	Peptidoglycan binding-like 	NA	NA	NA
PtpAffx.2076.1.S1_at	E	E	CK090455	CK090455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20761.1.S1_at	E	E	CV241344	CV241344	NA	NA	NA	NA	AT1G22020.1	serine hydroxymethyltransferase 6 	LOC_Os05g35440.2	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr2g006760.1	Glycine hydroxymethyltransferase; 	NA	NA	NA
PtpAffx.20773.2.A1_at	E	E	CK090797	CK090797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207766.1.S1_at	E	E	pmrna15448	pmrna15448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207771.1.S1_at	E	E	pmrna15455	pmrna15455	scaffold_8:4322785-4323208(-) (11)	NA	NA	NA	AT5G42905.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2078.1.A1_at	E	E	CK089841	CK089841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207826.1.S1_x_at	E	E	pmrna15547	pmrna15547	scaffold_8:5030441-5030606(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207883.1.S1_at	E	E	pmrna15651	pmrna15651	scaffold_8:5736200-5736423(-) (10)	NA	NA	NA	AT2G03390.1	uvrB/uvrC motif-containing protein 	NA	NA	Medtr5g046340.1	Hemimethylated DNA-binding region 	NA	NA	NA
PtpAffx.207883.1.S1_x_at	E	E	pmrna15651	pmrna15651	scaffold_8:5736200-5736423(-) (10)	NA	NA	NA	AT2G03390.1	uvrB/uvrC motif-containing protein 	NA	NA	Medtr5g046340.1	Hemimethylated DNA-binding region 	NA	NA	NA
PtpAffx.207914.1.S1_at	E	E	pmrna15706	pmrna15706	scaffold_8:6124417-6124536(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207914.1.S1_x_at	E	E	pmrna15706	pmrna15706	scaffold_8:6124390-6124551(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207929.1.S1_at	E	E	pmrna15737	pmrna15737	scaffold_8:6374532-6374696(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20793.2.A1_at	E	E	CV282768	CV282768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208011.1.S1_at	E	E	pmrna15904	pmrna15904	scaffold_8:7611658-7612139(+) (10)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	NA	NA	NA	NA	Medtr7g047580.1	Ribonuclease H 	NA	NA	NA
PtpAffx.208071.1.S1_at	E	E	pmrna16029	pmrna16029	NA	NA	NA	NA	AT1G23230.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). 	LOC_Os02g49992.1	expressed protein	AC233676_13.1	hypothetical protein AC233676.2 59489-58753 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.208071.1.S1_x_at	E	E	pmrna16029	pmrna16029	NA	NA	NA	NA	AT1G23230.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). 	LOC_Os02g49992.1	expressed protein	AC233676_13.1	hypothetical protein AC233676.2 59489-58753 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.2081.1.S1_at	E	E	CK089639	CK089639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208169.1.S1_at	E	E	pmrna16248	pmrna16248	NA	NA	NA	NA	AT1G04200.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os01g56630.1	"dymeclin, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.208211.1.S1_at	E	E	pmrna16340	pmrna16340	scaffold_8:11485940-11486161(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208220.1.S1_at	E	E	pmrna16360	pmrna16360	scaffold_8:11612255-11612603(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208233.1.S1_x_at	E	E	pmrna16382	pmrna16382	scaffold_1:48049680-48050123(-) (9)//scaffold_61:52064-52507(+) (10)//scaffold_8:11788772-11789215(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208278.1.S1_at	E	E	pmrna16468	pmrna16468	scaffold_19:3795518-3796110(+) (10)//scaffold_2689:40-632(-) (10)//scaffold_8:12845323-12845938(-) (11)	NA	NA	NA	NA	NA	LOC_Os04g19660.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr6g077370.1	"Zinc finger, CCHC-type; Retrotransposon gag protein "	NA	NA	NA
PtpAffx.208285.1.S1_a_at	E	E	pmrna16477	pmrna16477	scaffold_8:12933258-12933290(+) (9)//scaffold_8:12933279-12933311(+) (9)	NA	NA	NA	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39740.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	NA	NA	NA
PtpAffx.208285.1.S1_at	E	E	pmrna16477	pmrna16477	scaffold_8:12933030-12933321(+) (11)	NA	NA	NA	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39740.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	NA	NA	NA
PtpAffx.208322.1.S1_at	E	E	pmrna16546	pmrna16546	scaffold_8:13659236-13659594(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g29990.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.208327.1.S1_at	E	E	pmrna16557	pmrna16557	scaffold_8:13749366-13749629(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208327.1.S1_s_at	E	E	pmrna16557	pmrna16557	scaffold_8:13749219-13749768(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208332.1.S1_at	E	E	pmrna16567	pmrna16567	NA	NA	Q56XP4	Sodium/hydrogen exchanger 2	AT3G05030.2	sodium hydrogen exchanger 2 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208355.1.S1_at	E	E	pmrna16612	pmrna16612	scaffold_8:14219134-14219464(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208387.1.S1_at	E	E	pmrna16681	pmrna16681	scaffold_10:5830019-5830604(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.208411.1.S1_at	E	E	pmrna16717	pmrna16717	scaffold_10:5411430-5411603(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208411.1.S1_x_at	E	E	pmrna16717	pmrna16717	scaffold_10:5411430-5411603(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208416.1.S1_at	E	E	pmrna16726	pmrna16726	scaffold_10:5092045-5127215(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208443.1.S1_at	E	E	pmrna16775	pmrna16775	NA	NA	NA	NA	NA	NA	LOC_Os11g44150.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	NA	NA	NA
PtpAffx.208443.1.S1_x_at	E	E	pmrna16775	pmrna16775	NA	NA	NA	NA	NA	NA	LOC_Os11g44150.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	NA	NA	NA
PtpAffx.208458.1.S1_at	E	E	pmrna16801	pmrna16801	scaffold_10:737847-737971(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208461.1.S1_at	E	E	pmrna16806	pmrna16806	scaffold_10:951709-951825(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208476.1.S1_at	E	E	pmrna16839	pmrna16839	scaffold_10:1815996-1816772(+) (9)	NA	NA	NA	NA	NA	LOC_Os04g17880.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.208482.1.S1_at	E	E	pmrna16853	pmrna16853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208492.1.S1_at	E	E	pmrna16865	pmrna16865	scaffold_10:2024170-2024209(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208492.1.S1_x_at	E	E	pmrna16865	pmrna16865	scaffold_10:2024055-2024208(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208493.1.S1_at	E	E	pmrna16868	pmrna16868	NA	NA	P03554	Enzymatic polyprotein	NA	NA	LOC_Os08g18780.1	"retrotransposon protein, putative, unclassified"	AC234026_1.1	RNA-directed DNA polymerase (Reverse transcriptase) AC234026.1 2154-4412 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.208497.1.S1_at	E	E	pmrna16872	pmrna16872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208506.1.S1_at	E	E	pmrna16884	pmrna16884	scaffold_10:3976588-3977584(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208515.1.S1_at	E	E	pmrna16898	pmrna16898	scaffold_10:3765314-3765507(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208521.1.S1_at	E	E	pmrna16905	pmrna16905	scaffold_10:3633495-3634094(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208535.1.S1_at	E	E	pmrna16936	pmrna16936	scaffold_10:6397031-6397531(-) (11)	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.208538.1.S1_s_at	E	E	pmrna16945	pmrna16945	scaffold_10:3072127-3073340(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208544.1.S1_at	E	E	pmrna16957	pmrna16957	scaffold_10:2938985-2939347(+) (11)	NA	Q14FB8	"50S ribosomal protein L22, chloroplastic"	ATCG00810.1	ribosomal protein L22 	NA	NA	Medtr7g120590.1	"Ribosomal protein L22, bacterial and organelle form "	NA	NA	NA
PtpAffx.208581.1.S1_at	E	E	pmrna17027	pmrna17027	NA	NA	NA	NA	AT3G02690.1	nodulin MtN21 /EamA-like transporter family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208615.1.S1_at	E	E	pmrna17104	pmrna17104	scaffold_10:8053205-8053358(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208650.1.S1_at	E	E	pmrna17170	pmrna17170	NA	NA	NA	NA	AT1G67790.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 208 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	NA	NA	NA
PtpAffx.208700.1.S1_at	E	E	pmrna17258	pmrna17258	scaffold_10:6186454-6186792(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208717.1.S1_at	E	E	pmrna17286	pmrna17286	scaffold_10:9306768-9307470(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208724.1.S1_at	E	E	pmrna17300	pmrna17300	scaffold_10:9408593-9409170(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208742.1.S1_at	E	E	pmrna17333	pmrna17333	scaffold_10:9736182-9736623(+) (11)	NA	Q9CAR7	Hypersensitive-induced response protein 2	AT1G69840.7	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os09g19710.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g112930.4	Band 7 protein 	NA	NA	NA
PtpAffx.208773.1.S1_at	E	E	pmrna17389	pmrna17389	scaffold_10:10328790-10329080(+) (11)//scaffold_1010:4872-4999(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208773.1.S1_x_at	E	E	pmrna17389	pmrna17389	scaffold_10:10328790-10329080(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208781.1.S1_at	E	E	pmrna17404	pmrna17404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208954.1.S1_at	E	E	pmrna17742	pmrna17742	scaffold_10:13327800-13329101(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209.1.S1_at	E	E	BU889003	BU889003	NA	NA	Q96324	Glutathione S-transferase	AT3G03190.1	glutathione S-transferase F11 	NA	NA	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	NA	NA	NA
PtpAffx.2090.1.A1_at	E	E	CF236600	CF236600	scaffold_4:15131980-15132092(-) (11)	NA	Q56WK6	Patellin-1	AT1G72150.1	PATELLIN 1 	LOC_Os05g35460.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	NA	NA	NA
PtpAffx.209022.1.S1_at	E	E	pmrna17872	pmrna17872	scaffold_10:14351307-14351840(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209044.1.S1_at	E	E	pmrna17903	pmrna17903	scaffold_10:14557513-14557777(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209061.1.S1_at	E	E	pmrna17931	pmrna17931	NA	NA	NA	NA	AT3G66658.2	aldehyde dehydrogenase 22A1 	LOC_Os07g48920.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g038270.1	Aldehyde dehydrogenase 	NA	NA	NA
PtpAffx.209079.1.S1_at	E	E	pmrna17956	pmrna17956	scaffold_10:14825193-14825347(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2091.1.A1_at	E	E	CK088284	CK088284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209101.1.S1_at	E	E	pmrna18005	pmrna18005	scaffold_10:15188531-15188691(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209119.1.S1_at	E	E	pmrna18045	pmrna18045	scaffold_10:15517226-15517454(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209228.1.S1_at	E	E	pmrna18242	pmrna18242	scaffold_10:16772124-16772466(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209231.1.S1_at	E	E	pmrna18251	pmrna18251	NA	NA	Q43593	"Acyl-[acyl-carrier-protein] desaturase, chloroplastic"	AT3G02630.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os01g69080.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr5g024070.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	NA	NA	NA
PtpAffx.209299.1.S1_at	E	E	pmrna18381	pmrna18381	scaffold_10:17839783-17840106(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209348.1.S1_at	E	E	pmrna18499	pmrna18499	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr4g062150.1	Chloroplast Ycf2 	NA	NA	NA
PtpAffx.209351.1.S1_at	E	E	pmrna18514	pmrna18514	scaffold_10:18878282-18878589(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209360.1.S1_at	E	E	pmrna18536	pmrna18536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209369.1.S1_at	E	E	pmrna18551	pmrna18551	scaffold_10:19155670-19155812(-) (11)	NA	NA	NA	AT5G13590.1	unknown protein; Has 150 Blast hits to 121 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). 	NA	NA	Medtr1g146260.1	hypothetical protein 	NA	NA	NA
PtpAffx.209394.1.S1_at	E	E	pmrna18605	pmrna18605	scaffold_10:19529722-19530370(-) (10)	NA	Q9ZWB9	Long-chain-alcohol oxidase FAO1	AT1G03990.1	Long-chain fatty alcohol dehydrogenase family protein 	LOC_Os02g40840.1	"alcohol oxidase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.2094.1.A1_at	E	E	CK087479	CK087479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209414.1.S1_at	E	E	pmrna18645	pmrna18645	scaffold_10:19819573-19819713(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209437.1.S1_at	E	E	pmrna18684	pmrna18684	scaffold_10:20153022-20153855(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209471.1.S1_at	E	E	pmrna18781	pmrna18781	scaffold_10:21239591-21240475(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209565.1.S1_at	E	E	pmrna18940	pmrna18940	scaffold_21:585210-585366(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209565.1.S1_x_at	E	E	pmrna18940	pmrna18940	scaffold_21:585210-585366(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209600.1.S1_at	E	E	pmrna18985	pmrna18985	scaffold_21:126534-126666(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209634.1.S1_at	E	E	pmrna19033	pmrna19033	scaffold_11:1246424-1246957(+) (9)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g018370.1	TIR; NB-ARC; AAA ATPase 	NA	NA	NA
PtpAffx.209686.1.S1_at	E	E	pmrna19123	pmrna19123	scaffold_11:147724-148030(+) (10)//scaffold_11:150390-150696(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209691.1.S1_at	E	E	pmrna19131	pmrna19131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209694.1.S1_s_at	E	E	pmrna19134	pmrna19134	scaffold_12:846672-846810(-) (11)	NA	NA	NA	AT1G79740.1	hAT transposon superfamily 	LOC_Os01g12280.2	"hAT dimerisation domain-containing protein, putative, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
PtpAffx.209695.1.S1_at	E	E	pmrna19135	pmrna19135	NA	NA	P40691	Auxin-induced protein PCNT115	AT1G60690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g26910.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g021880.1	Aldo/keto reductase 	NA	NA	NA
PtpAffx.209730.1.S1_at	E	E	pmrna19207	pmrna19207	scaffold_11:4145105-4145482(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g41940.1	"retrotransposon protein, putative, unclassified"	Medtr5g075600.1	"Ribonuclease H; Zinc finger, U1-type; TB2/DP1 and HVA22 related protein "	NA	NA	NA
PtpAffx.209738.1.S1_at	E	E	pmrna19218	pmrna19218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209740.1.S1_at	E	E	pmrna19222	pmrna19222	scaffold_11:3811803-3812537(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209770.1.S1_at	E	E	pmrna19274	pmrna19274	scaffold_11:2342007-2342450(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209771.1.S1_at	E	E	pmrna19275	pmrna19275	scaffold_11:2343082-2343281(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g39760.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.209772.1.S1_at	E	E	pmrna19277	pmrna19277	scaffold_11:2358512-2358695(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209788.1.S1_at	E	E	pmrna19307	pmrna19307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209801.1.S1_at	E	E	pmrna19335	pmrna19335	scaffold_11:3211410-3211596(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209804.1.S1_at	E	E	pmrna19340	pmrna19340	scaffold_1:17260131-17260581(+) (10)//scaffold_11:9459779-9460230(+) (10)//scaffold_11:10580634-10581085(-) (11)//scaffold_467:4781-5071(-) (9)	NA	NA	NA	NA	NA	LOC_Os10g06830.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	NA	NA	NA
PtpAffx.209813.1.S1_x_at	E	E	pmrna19353	pmrna19353	scaffold_11:11033377-11033705(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209848.1.S1_at	E	E	pmrna19417	pmrna19417	NA	NA	Q2PMR7	Cytochrome b559 subunit alpha	ATCG00580.1	photosystem II reaction center protein E 	LOC_Os10g21298.1	"cytochrome b559 subunit alpha, putative"	Medtr4g042270.1	Photosystem II protein PsbL; Photosystem II protein cytochrome b559; 	NA	NA	NA
PtpAffx.209863.1.S1_s_at	E	E	pmrna19438	pmrna19438	NA	NA	NA	NA	AT3G18380.1	sequence-specific DNA binding transcription factors;sequence-specific DNA binding 	LOC_Os06g29020.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g070910.1	Homeodomain-related 	NA	NA	NA
PtpAffx.209876.1.S1_at	E	E	pmrna19456	pmrna19456	scaffold_11:6328889-6329206(+) (11)//scaffold_3:5075982-5076299(+) (9)	NA	NA	NA	NA	NA	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.209880.1.S1_at	E	E	pmrna19466	pmrna19466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209933.1.S1_at	E	E	pmrna19592	pmrna19592	scaffold_11:13935646-13935882(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20995.1.S1_at	E	E	CV266326	CV266326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209964.1.S1_at	E	E	pmrna19651	pmrna19651	scaffold_11:14701805-14702265(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209970.1.S1_at	E	E	pmrna19661	pmrna19661	scaffold_11:14798441-14798619(+) (11)	NA	NA	NA	AT4G28350.1	Concanavalin A-like lectin protein kinase family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209984.1.S1_at	E	E	pmrna19697	pmrna19697	scaffold_11:15143368-15143432(-) (10)//scaffold_5:2108229-2108293(-) (9)	NA	NA	NA	AT5G48050.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.209984.1.S1_s_at	E	E	pmrna19697	pmrna19697	scaffold_11:15147139-15147474(-) (11)//scaffold_5:2114587-2114922(-) (11)	NA	NA	NA	AT5G48050.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.21.1.A1_at	E	E	DN492083	DN492083	scaffold_6:25504705-25526053(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210011.1.S1_at	E	E	pmrna19740	pmrna19740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210012.1.S1_at	E	E	pmrna19741	pmrna19741	scaffold_11:16002243-16002644(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210024.1.S1_at	E	E	pmrna19757	pmrna19757	scaffold_11:16220349-16220836(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g38750.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.210039.1.S1_at	E	E	pmrna19779	pmrna19779	scaffold_11:16387980-16388396(+) (10)	NA	NA	NA	NA	NA	LOC_Os02g01840.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.210073.1.S1_at	E	E	pmrna19846	pmrna19846	scaffold_11:16820726-16820986(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210087.1.S1_at	E	E	pmrna19869	pmrna19869	scaffold_11:16992432-16992613(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210108.1.S1_at	E	E	pmrna19918	pmrna19918	scaffold_11:17301152-17301395(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210119.1.S1_at	E	E	pmrna19938	pmrna19938	scaffold_11:17437798-17438267(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	NA	NA	NA
PtpAffx.210157.1.S1_at	E	E	pmrna20013	pmrna20013	scaffold_15:10563521-10565797(+) (10)	NA	Q9S7N2	Tryptophan aminotransferase 1	AT4G24670.2	tryptophan aminotransferase related 2 	LOC_Os05g07720.1	"alliin lyase precursor, putative, expressed"	Medtr3g114550.1	"Allinase, C-terminal; ; "	NA	NA	NA
PtpAffx.210160.1.S1_at	E	E	pmrna20021	pmrna20021	NA	NA	NA	NA	AT3G58390.1	Eukaryotic release factor 1 (eRF1) family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21017.1.S1_at	E	E	DN492650	DN492650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210172.1.S1_at	E	E	pmrna20045	pmrna20045	scaffold_12:3062903-3064107(-) (10)	NA	P51819	Heat shock protein 83	AT5G52640.1	heat shock protein 90.1 	LOC_Os09g30439.1	"heat shock protein, putative"	Medtr1g126230.1	"ATP-binding region, ATPase-like "	NA	NA	NA
PtpAffx.210245.1.S1_s_at	E	E	pmrna20170	pmrna20170	scaffold_197:32677-32903(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g44200.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.210251.1.S1_at	E	E	pmrna20179	pmrna20179	scaffold_12:1439486-1440713(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210255.1.S1_x_at	E	E	pmrna20185	pmrna20185	scaffold_61:51898-52094(+) (11)//scaffold_8:11789185-11789381(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210259.1.S1_s_at	E	E	pmrna20190	pmrna20190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210288.1.S1_at	E	E	pmrna20238	pmrna20238	scaffold_12:1998167-1998313(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210326.1.S1_s_at	E	E	pmrna20317	pmrna20317	scaffold_39:69872-70542(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210341.1.S1_at	E	E	pmrna20335	pmrna20335	scaffold_12:494471-494940(+) (9)//scaffold_1487:335-804(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210341.1.S1_s_at	E	E	pmrna20335	pmrna20335	scaffold_12:494379-494669(+) (11)//scaffold_1487:243-533(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210345.1.S1_s_at	E	E	pmrna20339	pmrna20339	NA	NA	NA	NA	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.2	"AAA-type ATPase family protein, putative"	Medtr3g123360.1	"AAA ATPase, central region "	NA	NA	NA
PtpAffx.210350.1.S1_at	E	E	pmrna20346	pmrna20346	scaffold_12:446354-447563(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	NA	NA	NA
PtpAffx.210401.1.S1_at	E	E	pmrna20444	pmrna20444	scaffold_12:4154457-4154630(-) (11)//scaffold_12:4165640-4165813(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210462.1.S1_a_at	E	E	pmrna20540	pmrna20540	scaffold_12:5760770-5761332(+) (11)//scaffold_12:5761085-5761174(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210474.1.S1_at	E	E	pmrna20560	pmrna20560	scaffold_12:12715831-12728914(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210476.1.S1_at	E	E	pmrna20562	pmrna20562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210476.1.S1_x_at	E	E	pmrna20562	pmrna20562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21048.1.S1_at	E	E	CV255089	CV255089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210481.1.S1_at	E	E	pmrna20567	pmrna20567	scaffold_12:6961688-6962695(+) (10)	NA	P93295	Uncharacterized mitochondrial protein AtMg00310	AT4G29090.1	Ribonuclease H-like superfamily protein 	LOC_Os12g29700.1	"retrotransposon protein, putative, unclassified"	Medtr3g044190.1	"RNA-directed DNA polymerase (reverse transcriptase), related "	NA	NA	NA
PtpAffx.210503.1.S1_at	E	E	pmrna20603	pmrna20603	scaffold_12:7667674-7668284(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210509.1.S1_at	E	E	pmrna20614	pmrna20614	NA	NA	O04395	Flavonol synthase/flavanone 3-hydroxylase (Fragment)	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g55070.1	"gibberellin 20 oxidase 2, putative"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.210511.1.S1_at	E	E	pmrna20616	pmrna20616	scaffold_12:7807324-7808634(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210528.1.S1_at	E	E	pmrna20642	pmrna20642	scaffold_12:8314227-8316495(+) (11)	NA	Q8BL06	Inactive ubiquitin carboxyl-terminal hydrolase 54	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.210529.1.S1_at	E	E	pmrna20644	pmrna20644	scaffold_12:8326419-8326663(-) (10)	NA	NA	NA	AT1G18910.1	zinc ion binding;zinc ion binding 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr4g158010.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region "	NA	NA	NA
PtpAffx.210567.1.S1_s_at	E	E	pmrna20729	pmrna20729	NA	NA	NA	NA	AT5G62810.1	peroxin 14 	LOC_Os05g01090.3	"pex14, putative, expressed"	Medtr8g125610.1	Peroxisomal membrane anchor protein (Pex14p) 	NA	NA	NA
PtpAffx.210571.1.S1_at	E	E	pmrna20734	pmrna20734	scaffold_12:9350780-9351054(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210619.1.S1_at	E	E	pmrna20830	pmrna20830	scaffold_12:10450845-10451829(+) (11)//scaffold_8:10845663-10846646(+) (9)	NA	NA	NA	NA	NA	LOC_Os05g45550.1	"retrotransposon protein, putative, unclassified"	Medtr3g058900.1	"Zinc finger, CCHC-type "	NA	NA	NA
PtpAffx.210641.1.S1_at	E	E	pmrna20870	pmrna20870	scaffold_12:10723188-10723705(+) (11)	NA	Q9NZW4	Dentin sialophosphoprotein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210661.1.S1_at	E	E	pmrna20906	pmrna20906	NA	NA	NA	NA	NA	NA	NA	NA	AC231357_6.1	Cyclin-like F-box; F-box protein interaction domain AC231357.5 36928-38133 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.210668.1.S1_at	E	E	pmrna20921	pmrna20921	NA	NA	NA	NA	ATCG00220.1	photosystem II reaction center protein M 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210713.1.S1_at	E	E	pmrna21015	pmrna21015	scaffold_12:11813193-11813528(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210713.1.S1_s_at	E	E	pmrna21015	pmrna21015	scaffold_12:11812776-11813207(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210719.1.S1_at	E	E	pmrna21024	pmrna21024	scaffold_1330:1615-1718(+) (9)	NA	NA	NA	AT5G51110.1	Transcriptional coactivator/pterin dehydratase 	LOC_Os01g47420.3	"pterin-4-alpha-carbinolamine dehydratase, putative, expressed"	Medtr5g019890.1	Transcriptional coactivator/pterin dehydratase 	NA	NA	NA
PtpAffx.210801.1.S1_at	E	E	pmrna21209	pmrna21209	scaffold_12:14534230-14534262(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210808.1.S1_at	E	E	pmrna21218	pmrna21218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210832.1.S1_at	E	E	pmrna21272	pmrna21272	scaffold_13:249880-250503(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210882.1.S1_at	E	E	pmrna21368	pmrna21368	scaffold_13:887782-888182(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210977.1.S1_at	E	E	pmrna21563	pmrna21563	NA	NA	NA	NA	AT3G04890.2	Uncharacterized conserved protein (DUF2358) 	LOC_Os07g10495.1	expressed protein	Medtr1g096340.1	"SOUL3-like protein, related "	NA	NA	NA
PtpAffx.210990.1.S1_at	E	E	pmrna21582	pmrna21582	scaffold_13:2343494-2343639(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211061.1.S1_at	E	E	pmrna21725	pmrna21725	scaffold_13:3731063-3731412(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211066.1.S1_at	E	E	pmrna21730	pmrna21730	NA	NA	Q8BKC5	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os07g38760.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	NA	NA	NA
PtpAffx.211081.1.S1_at	E	E	pmrna21768	pmrna21768	scaffold_13:4146614-4146886(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g42380.1	"retrotransposon protein, putative, unclassified"	Medtr3g061320.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.2111.2.S1_at	E	E	DN492888	DN492888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211109.1.S1_at	E	E	pmrna21825	pmrna21825	NA	NA	O64668	Presenilin-like protein At1g08700	AT1G08700.1	Presenilin-1 	LOC_Os01g16930.1	"presenilin, putative, expressed"	Medtr7g104070.1	"Peptidase A22A, presenilin "	NA	NA	NA
PtpAffx.211117.1.S1_at	E	E	pmrna21838	pmrna21838	scaffold_17:10779324-10779435(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211158.1.S1_s_at	E	E	pmrna21935	pmrna21935	scaffold_13:6595326-6595703(-) (11)	NA	Q02964	Enzymatic polyprotein	NA	NA	LOC_Os12g42720.1	"retrotransposon protein, putative, unclassified"	Medtr5g062290.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.211160.1.S1_s_at	E	E	pmrna21939	pmrna21939	scaffold_1:44289966-44290069(-) (10)//scaffold_10:1421015-1421118(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211211.1.S1_at	E	E	pmrna22026	pmrna22026	scaffold_1:45205570-45205604(+) (9)//scaffold_1:45208242-45208276(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr3g067720.1	Protein of unknown function DUF1723 	NA	NA	NA
PtpAffx.211229.1.S1_at	E	E	pmrna22055	pmrna22055	NA	NA	A4GYR8	Ribulose bisphosphate carboxylase large chain	ATCG00490.1	ribulose-bisphosphate carboxylases 	LOC_Os12g10580.1	"ribulose bisphosphate carboxylase large chain precursor, putative"	Medtr7g145780.1	"Ribulose bisphosphate carboxylase, large chain "	NA	NA	NA
PtpAffx.211232.1.S1_s_at	E	E	pmrna22059	pmrna22059	scaffold_10:4550168-4550359(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211233.1.S1_at	E	E	pmrna22060	pmrna22060	scaffold_10:4550054-4550151(+) (11)	NA	NA	NA	AT1G43760.1	DNAse I-like superfamily protein 	LOC_Os12g43060.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.211241.1.S1_x_at	E	E	pmrna22069	pmrna22069	NA	NA	NA	NA	NA	NA	LOC_Os12g17510.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr6g077370.1	"Zinc finger, CCHC-type; Retrotransposon gag protein "	NA	NA	NA
PtpAffx.211242.1.S1_at	E	E	pmrna22070	pmrna22070	scaffold_13:8462879-8463469(+) (11)	NA	NA	NA	AT1G34070.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g36620.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.211256.1.S1_at	E	E	pmrna22091	pmrna22091	scaffold_13:8849396-8849546(-) (11)	NA	Q9FJ54	CBL-interacting serine/threonine-protein kinase 20	AT5G45820.1	CBL-interacting protein kinase 20 	LOC_Os05g26820.1	"CAMK_KIN1/SNF1/Nim1_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g082900.1	Protein kinase; NAF 	NA	NA	NA
PtpAffx.211279.1.S1_at	E	E	pmrna22122	pmrna22122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211285.1.S1_at	E	E	pmrna22132	pmrna22132	NA	NA	Q2PMQ4	Cytochrome b6-f complex subunit 4	ATCG00730.1	photosynthetic electron transfer D 	LOC_Os10g21326.1	"cytochrome b6-f complex subunit 4, putative"	Medtr4g042520.1	"Cytochrome b/b6, C-terminal; Photosynthetic reaction centre protein cytochrome b6/f_IV "	NA	NA	NA
PtpAffx.211288.1.S1_at	E	E	pmrna22139	pmrna22139	scaffold_13:11176486-11176547(-) (11)//scaffold_13:11283499-11283560(-) (11)//scaffold_13:11345416-11345477(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211288.1.S1_s_at	E	E	pmrna22139	pmrna22139	scaffold_13:11176333-11176904(-) (11)//scaffold_13:11345263-11345834(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211289.1.S1_at	E	E	pmrna22140	pmrna22140	scaffold_13:11355346-11356342(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211290.1.S1_at	E	E	pmrna22141	pmrna22141	scaffold_13:11345504-11346185(-) (10)	NA	NA	NA	AT1G43760.1	DNAse I-like superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211291.1.S1_at	E	E	pmrna22142	pmrna22142	scaffold_13:11174565-11174851(-) (9)//scaffold_13:11343547-11343833(-) (9)	NA	NA	NA	AT1G60720.1	RNA-directed DNA polymerase (reverse transcriptase)-related family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211309.1.S1_at	E	E	pmrna22172	pmrna22172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211331.1.S1_x_at	E	E	pmrna22219	pmrna22219	NA	NA	Q0ZJ30	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	LOC_Os04g16830.1	"DNA-directed RNA polymerase subunit beta, putative"	Medtr4g042160.1	"RNA polymerase Rpb1, domain 5 "	NA	NA	NA
PtpAffx.211338.1.S1_at	E	E	pmrna22229	pmrna22229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211347.1.S1_at	E	E	pmrna22243	pmrna22243	scaffold_13:14967519-14967811(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g133540.1	Prenyltransferase/squalene oxidase 	NA	NA	NA
PtpAffx.211384.1.S1_at	E	E	pmrna22314	pmrna22314	scaffold_13:15525383-15525772(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g22340.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.211388.1.S1_at	E	E	pmrna22322	pmrna22322	scaffold_13:15579873-15580209(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211404.1.S1_at	E	E	pmrna22349	pmrna22349	scaffold_14:872850-873497(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211455.1.S1_at	E	E	pmrna22447	pmrna22447	scaffold_14:4712167-4712924(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211499.1.S1_at	E	E	pmrna22536	pmrna22536	scaffold_14:5444040-5444430(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211500.1.S1_at	E	E	pmrna22537	pmrna22537	NA	NA	Q93VY3	NAC domain-containing protein 72	AT3G03200.1	NAC domain containing protein 45 	LOC_Os08g06140.3	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.211521.1.S1_at	E	E	pmrna22577	pmrna22577	scaffold_14:5696918-5697457(-) (9)	NA	NA	NA	AT3G09970.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211576.1.S1_at	E	E	pmrna22687	pmrna22687	scaffold_14:6478199-6478332(-) (11)	NA	Q14FH4	Photosystem II reaction center protein K	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211647.1.S1_at	E	E	pmrna22821	pmrna22821	scaffold_14:7564477-7564646(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211688.1.S1_at	E	E	pmrna22908	pmrna22908	scaffold_14:8207843-8208167(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211705.1.S1_at	E	E	pmrna22941	pmrna22941	scaffold_14:8434091-8434263(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211744.1.S1_at	E	E	pmrna23013	pmrna23013	scaffold_14:8901831-8901921(-) (11)	NA	Q9SWH4	Syntaxin-42	AT4G02195.1	syntaxin of plants 42 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211839.1.S1_s_at	E	E	pmrna23237	pmrna23237	scaffold_14:10613061-10613221(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211885.1.S1_at	E	E	pmrna23340	pmrna23340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211889.1.S1_at	E	E	pmrna23347	pmrna23347	scaffold_14:11797168-11797630(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211889.1.S1_s_at	E	E	pmrna23347	pmrna23347	scaffold_14:11797074-11797517(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211895.1.S1_at	E	E	pmrna23365	pmrna23365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211925.1.S1_at	E	E	pmrna23417	pmrna23417	scaffold_14:12548058-12548237(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g049390.1	Protein of unknown function DUF567 	NA	NA	NA
PtpAffx.211949.1.S1_at	E	E	pmrna23461	pmrna23461	scaffold_14:13225992-13226225(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211949.1.S1_x_at	E	E	pmrna23461	pmrna23461	scaffold_14:13225992-13226225(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211964.1.S1_at	E	E	pmrna23488	pmrna23488	scaffold_14:13479603-13479775(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211970.1.S1_at	E	E	pmrna23505	pmrna23505	scaffold_14:13753694-13753990(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211978.1.S1_at	E	E	pmrna23525	pmrna23525	scaffold_14:13960122-13960522(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211978.1.S1_x_at	E	E	pmrna23525	pmrna23525	scaffold_14:13960123-13960522(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211982.1.S1_at	E	E	pmrna23530	pmrna23530	scaffold_14:14035811-14036243(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211989.1.S1_at	E	E	pmrna23546	pmrna23546	scaffold_14:14483392-14484415(-) (9)	NA	NA	NA	AT1G75150.1	unknown protein; Has 38228 Blast hits to 24529 proteins in 1168 species: Archae - 169; Bacteria - 4103; Metazoa - 14594; Fungi - 5866; Plants - 1861; Viruses - 317; Other Eukaryotes - 11318 (source: NCBI BLink). 	LOC_Os03g59480.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.211990.1.S1_at	E	E	pmrna23548	pmrna23548	scaffold_14:14522947-14523418(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212000.1.S1_at	E	E	pmrna23569	pmrna23569	scaffold_14:16953443-16954146(-) (10)	NA	Q8IIG7	Uncharacterized protein PF11_0207	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212017.1.S1_at	E	E	pmrna23597	pmrna23597	scaffold_14:16205805-16206370(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212018.1.S1_at	E	E	pmrna23598	pmrna23598	scaffold_14:16154578-16155047(+) (9)	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.212025.1.S1_at	E	E	pmrna23608	pmrna23608	scaffold_14:16038400-16038770(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212026.1.S1_at	E	E	pmrna23611	pmrna23611	scaffold_14:15989150-15989388(-) (10)	NA	NA	NA	AT1G04130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g53910.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.212036.1.S1_at	E	E	pmrna23628	pmrna23628	scaffold_14:15644631-15644821(+) (11)	NA	NA	NA	AT4G28600.1	no pollen germination related 2 	LOC_Os10g33290.2	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.212045.1.S1_at	E	E	pmrna23639	pmrna23639	scaffold_14:15438679-15439111(+) (11)	NA	NA	NA	NA	NA	LOC_Os11g36860.1	"retrotransposon protein, putative, unclassified"	AC233082_3.1	"RNA-directed DNA polymerase (Reverse transcriptase); Peptidase aspartic, active site; Retrotransposon gag protein AC233082.3 19216-16757 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.212058.1.S1_at	E	E	pmrna23666	pmrna23666	scaffold_20:854563-854752(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212066.1.S1_at	E	E	pmrna23679	pmrna23679	scaffold_20:528346-528385(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212102.1.S1_at	E	E	pmrna23736	pmrna23736	NA	NA	NA	NA	AT5G08450.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). 	LOC_Os07g29450.1	expressed protein	Medtr6g070970.1	hypothetical protein 	NA	NA	NA
PtpAffx.212103.1.S1_at	E	E	pmrna23737	pmrna23737	scaffold_31:27122-27461(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212109.1.S1_at	E	E	pmrna23750	pmrna23750	scaffold_19:465454-465629(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212128.1.S1_x_at	E	E	pmrna23787	pmrna23787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212133.1.S1_at	E	E	pmrna23793	pmrna23793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21215.1.S1_at	E	E	DN487798	DN487798	NA	NA	Q9FG65	Cytochrome P450 81D1	AT4G37360.1	"cytochrome P450, family 81, subfamily D, polypeptide 2 "	LOC_Os12g39310.1	"cytochrome P450, putative, expressed"	Medtr5g016390.1	Cytochrome P450 	NA	NA	NA
PtpAffx.212179.1.S1_at	E	E	pmrna23878	pmrna23878	scaffold_19:7997553-7997858(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g27740.1	"retrotransposon protein, putative, unclassified"	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.212183.1.S1_at	E	E	pmrna23882	pmrna23882	scaffold_19:8178613-8178977(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212198.1.S1_at	E	E	pmrna23913	pmrna23913	scaffold_19:8941910-8942247(-) (11)	NA	P04146	Copia protein	NA	NA	LOC_Os03g25890.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.212232.1.S1_x_at	E	E	pmrna23978	pmrna23978	scaffold_19:5637127-5637658(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212237.1.S1_x_at	E	E	pmrna23990	pmrna23990	scaffold_19:5824569-5825108(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212257.1.S1_at	E	E	pmrna24028	pmrna24028	scaffold_19:6328192-6328458(-) (9)	NA	NA	NA	NA	NA	LOC_Os10g18440.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.212273.1.S1_at	E	E	pmrna24059	pmrna24059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212273.1.S1_s_at	E	E	pmrna24059	pmrna24059	scaffold_1:23883375-23883726(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212298.1.S1_at	E	E	pmrna24118	pmrna24118	NA	NA	NA	NA	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g16670.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr4g084040.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	NA	NA	NA
PtpAffx.212298.1.S1_x_at	E	E	pmrna24118	pmrna24118	NA	NA	NA	NA	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g16670.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr4g084040.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	NA	NA	NA
PtpAffx.212310.1.S1_at	E	E	pmrna24137	pmrna24137	scaffold_1:29231555-29231968(-) (11)//scaffold_17:14496361-14496774(-) (11)//scaffold_3:2049612-2050025(+) (11)	NA	Q9FKN7	Protein DA1-related 4	AT4G12010.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g042550.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.212326.1.S1_at	E	E	pmrna24170	pmrna24170	scaffold_19:11878623-11879170(-) (11)//scaffold_1929:1980-2582(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212330.1.S1_at	E	E	pmrna24176	pmrna24176	scaffold_19:11937762-11937970(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212330.1.S1_x_at	E	E	pmrna24176	pmrna24176	scaffold_19:11937762-11937947(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212331.1.S1_at	E	E	pmrna24177	pmrna24177	scaffold_19:11940380-11941316(+) (10)	NA	NA	NA	NA	NA	LOC_Os02g22040.1	"retrotransposon protein, putative, unclassified"	Medtr3g061730.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.212332.1.S1_at	E	E	pmrna24179	pmrna24179	scaffold_19:11972826-11973108(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212366.1.S1_at	E	E	pmrna24235	pmrna24235	scaffold_19:12462226-12462843(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212368.1.S1_at	E	E	pmrna24240	pmrna24240	scaffold_19:12481166-12481305(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212406.1.S1_at	E	E	pmrna24304	pmrna24304	scaffold_19:13071115-13071709(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g02010.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.212407.1.S1_at	E	E	pmrna24305	pmrna24305	scaffold_19:13071998-13072173(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212490.1.S1_at	E	E	pmrna24459	pmrna24459	scaffold_19:15363420-15363938(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g074930.1	Ribonuclease H 	NA	NA	NA
PtpAffx.212509.1.S1_at	E	E	pmrna24498	pmrna24498	NA	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT1G03940.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr2g102840.1	Transferase 	NA	NA	NA
PtpAffx.212522.1.S1_at	E	E	pmrna24524	pmrna24524	scaffold_15:193272-193878(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212551.1.S1_at	E	E	pmrna24590	pmrna24590	scaffold_15:561480-561693(+) (10)	NA	Q69NG5	"Probable 6-phosphogluconolactonase 4, chloroplastic"	NA	NA	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.2	6-phosphogluconolactonase 	NA	NA	NA
PtpAffx.212559.1.S1_at	E	E	pmrna24608	pmrna24608	scaffold_15:691181-691543(-) (9)	NA	NA	NA	AT1G11930.2	"Predicted pyridoxal phosphate-dependent enzyme, YBL036C type "	LOC_Os05g05740.1	"proline synthetase co-transcribed bacterial homolog protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.212587.1.S1_at	E	E	pmrna24662	pmrna24662	scaffold_15:1063719-1064354(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212600.1.S1_at	E	E	pmrna24677	pmrna24677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212600.1.S1_s_at	E	E	pmrna24677	pmrna24677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212621.1.S1_at	E	E	pmrna24708	pmrna24708	scaffold_15:1454160-1454587(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212655.1.S1_at	E	E	pmrna24763	pmrna24763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212655.1.S1_x_at	E	E	pmrna24763	pmrna24763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212663.1.S1_at	E	E	pmrna24774	pmrna24774	scaffold_15:3448113-3448170(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212669.1.S1_at	E	E	pmrna24783	pmrna24783	scaffold_15:3602340-3610728(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212676.1.S1_at	E	E	pmrna24793	pmrna24793	NA	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G18390.2	Protein kinase superfamily protein 	NA	NA	Medtr4g157930.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.212695.1.S1_at	E	E	pmrna24825	pmrna24825	scaffold_15:4242873-4242986(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212700.1.S1_at	E	E	pmrna24839	pmrna24839	scaffold_15:4395258-4395595(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212701.1.S1_at	E	E	pmrna24842	pmrna24842	scaffold_15:4494318-4495103(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212728.1.S1_at	E	E	pmrna24898	pmrna24898	scaffold_15:8984919-8985754(+) (10)	NA	NA	NA	NA	NA	LOC_Os02g01470.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.212735.1.S1_at	E	E	pmrna24908	pmrna24908	scaffold_15:9074974-9075121(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212748.1.S1_at	E	E	pmrna24935	pmrna24935	scaffold_15:9325260-9325427(+) (10)	NA	NA	NA	AT4G12650.1	Endomembrane protein 70 protein family 	LOC_Os08g38820.2	"transmembrane 9 superfamily member, putative, expressed"	Medtr3g107100.1	Nonaspanin (TM9SF) 	NA	NA	NA
PtpAffx.212761.1.S1_at	E	E	pmrna24961	pmrna24961	scaffold_704:1228-3188(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212800.1.S1_at	E	E	pmrna25049	pmrna25049	NA	NA	Q9S7N2	Tryptophan aminotransferase 1	AT4G24670.2	tryptophan aminotransferase related 2 	LOC_Os01g07500.1	"alliin lyase precursor, putative, expressed"	Medtr3g114550.1	"Allinase, C-terminal; ; "	NA	NA	NA
PtpAffx.212802.1.S1_at	E	E	pmrna25053	pmrna25053	scaffold_15:10600441-10602229(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212852.1.S1_at	E	E	pmrna25151	pmrna25151	scaffold_15:11353115-11353323(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212944.1.S1_at	E	E	pmrna25326	pmrna25326	scaffold_15:12559702-12561588(+) (10)	NA	NA	NA	NA	NA	LOC_Os02g47180.2	"WD repeat-containing protein, putative, expressed"	Medtr2g071390.1	Cdc20/Fizzy; WD40-like 	NA	NA	NA
PtpAffx.212962.1.S1_at	E	E	pmrna25362	pmrna25362	NA	NA	NA	NA	AT5G61840.1	Exostosin family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.212962.1.S1_x_at	E	E	pmrna25362	pmrna25362	NA	NA	NA	NA	AT5G61840.1	Exostosin family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.212963.1.S1_at	E	E	pmrna25363	pmrna25363	scaffold_296:7327-7483(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212983.1.S1_x_at	E	E	pmrna25395	pmrna25395	scaffold_1:42294612-42294910(+) (11)//scaffold_1:45373347-45373404(+) (10)//scaffold_1:48049991-48050289(-) (11)//scaffold_1:48211498-48211796(+) (11)//scaffold_10:3800234-3800291(-) (10)//scaffold_11:6588316-6588614(+) (11)//scaffold_11:7078643-7078941(+) (11)//scaffold_112:58163-58461(-) (11)//scaffold_14:34399-34456(+) (10)//scaffold_15:14437049-14437347(-) (11)//scaffold_15:14862143-14862441(+) (11)//scaffold_19:12738943-12739241(+) (11)//scaffold_1980:2163-2460(-) (11)//scaffold_20:528398-528454(-) (9)//scaffold_43:57112-57169(+) (10)//scaffold_46:169761-170059(+) (11)//scaffold_48:121448-121746(-) (11)//scaffold_6:14467578-14467635(-) (10)//scaffold_75:75748-76046(-) (11)//scaffold_767:6396-6453(-) (10)//scaffold_8:11789083-11789381(-) (11)//scaffold_86:9003-9060(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213.1.S1_at	E	E	DN485835	DN485835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213003.1.S1_at	E	E	pmrna25426	pmrna25426	scaffold_15:14640206-14640306(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213015.1.S1_at	E	E	pmrna25449	pmrna25449	NA	NA	NA	NA	AT3G58480.1	calmodulin-binding family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.2	IQ calmodulin-binding region 	NA	NA	NA
PtpAffx.213026.1.S1_at	E	E	pmrna25475	pmrna25475	scaffold_15:14118256-14119051(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213033.1.S1_at	E	E	pmrna25498	pmrna25498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213043.1.S1_at	E	E	pmrna25524	pmrna25524	scaffold_15:13802764-13803242(-) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT3G24255.1	RNA-directed DNA polymerase (reverse transcriptase)-related family protein 	LOC_Os05g15950.1	"retrotransposon protein, putative, unclassified"	Medtr1g010300.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.213064.1.S1_at	E	E	pmrna25566	pmrna25566	scaffold_15:13476479-13476650(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213108.1.S1_at	E	E	pmrna25650	pmrna25650	NA	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT4G25640.2	detoxifying efflux carrier 35 	LOC_Os08g44870.1	"MATE efflux family protein, putative, expressed"	Medtr1g126620.1	Multi antimicrobial extrusion protein MatE 	NA	NA	NA
PtpAffx.213110.1.S1_at	E	E	pmrna25653	pmrna25653	scaffold_15:12966060-12966319(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213170.1.S1_at	E	E	pmrna25763	pmrna25763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213182.1.S1_s_at	E	E	pmrna25791	pmrna25791	scaffold_16:1084365-1084610(+) (9)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g51900.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr6g014550.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
PtpAffx.213237.1.S1_at	E	E	pmrna25888	pmrna25888	NA	NA	Q9FF61	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1	AT5G05130.1	DNA/RNA helicase protein 	LOC_Os07g44800.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed"	Medtr7g106230.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; ; "	NA	NA	NA
PtpAffx.213256.1.S1_at	E	E	pmrna25933	pmrna25933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21331.2.A1_at	E	E	CV243413	CV243413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213314.1.S1_at	E	E	pmrna26039	pmrna26039	scaffold_16:3093157-3093197(+) (10)	NA	A4GYX4	Putative membrane protein ycf1	ATCG01000.1	Ycf1 protein 	NA	NA	Medtr4g023010.1	Ycf1 	NA	NA	NA
PtpAffx.213329.1.S1_at	E	E	pmrna26071	pmrna26071	scaffold_16:3402829-3404016(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213351.1.S1_at	E	E	pmrna26125	pmrna26125	scaffold_378:40004-40331(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213355.1.S1_at	E	E	pmrna26131	pmrna26131	NA	NA	NA	NA	AT3G58520.2	Ubiquitin carboxyl-terminal hydrolase family protein 	NA	NA	AC235488_36.1	"Protein of unknown function DUF860, plant AC235488.1 174238-172773 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.213415.1.S1_at	E	E	pmrna26240	pmrna26240	scaffold_16:5191750-5192227(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213421.1.S1_at	E	E	pmrna26246	pmrna26246	scaffold_16:5239014-5239200(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213454.1.S1_at	E	E	pmrna26307	pmrna26307	scaffold_16:5923918-5925102(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213498.1.S1_at	E	E	pmrna26386	pmrna26386	scaffold_16:6823558-6824348(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213523.1.S1_at	E	E	pmrna26429	pmrna26429	scaffold_16:7716161-7716488(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213528.1.S1_at	E	E	pmrna26438	pmrna26438	scaffold_1:44300413-44300612(-) (9)//scaffold_16:9631249-9631463(-) (11)//scaffold_1712:3078-3292(-) (11)//scaffold_4:22754891-22755105(-) (11)//scaffold_7:7554354-7554568(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213537.1.S1_at	E	E	pmrna26461	pmrna26461	scaffold_16:9100465-9100769(+) (11)//scaffold_892:4800-5050(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213559.1.S1_at	E	E	pmrna26491	pmrna26491	scaffold_16:8704261-8704547(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213579.1.S1_at	E	E	pmrna26528	pmrna26528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213581.1.S1_x_at	E	E	pmrna26530	pmrna26530	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213582.1.S1_at	E	E	pmrna26531	pmrna26531	scaffold_16:10697353-10697658(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213605.1.S1_at	E	E	pmrna26567	pmrna26567	scaffold_16:11057627-11057957(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213612.1.S1_at	E	E	pmrna26582	pmrna26582	scaffold_16:11320496-11321158(-) (10)	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.213613.1.S1_at	E	E	pmrna26583	pmrna26583	scaffold_16:11322690-11322946(-) (11)	NA	O80437	Glycerol-3-phosphate acyltransferase 6	AT2G38110.1	glycerol-3-phosphate acyltransferase 6 	LOC_Os01g63580.1	"glycerol-3-phosphate acyltransferase, putative, expressed"	Medtr3g024620.1	Phospholipid/glycerol acyltransferase 	NA	NA	NA
PtpAffx.213614.1.S1_at	E	E	pmrna26588	pmrna26588	scaffold_16:11433979-11435396(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213616.1.S1_at	E	E	pmrna26590	pmrna26590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213654.1.S1_x_at	E	E	pmrna26665	pmrna26665	scaffold_16:12363471-12363622(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213671.1.S1_s_at	E	E	pmrna26695	pmrna26695	scaffold_1:18169701-18170179(+) (11)//scaffold_16:12617161-12617639(+) (11)//scaffold_4:3522379-3522857(+) (10)	NA	NA	NA	AT1G34070.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g35570.1	"retrotransposon protein, putative, unclassified"	Medtr4g079130.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.213724.1.S1_at	E	E	pmrna26781	pmrna26781	NA	NA	P81651	Non-specific lipid-transfer protein 1	AT5G59320.1	lipid transfer protein 3 	LOC_Os11g24070.1	"LTPL10 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g080120.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	NA	NA	NA
PtpAffx.213734.1.S1_at	E	E	pmrna26805	pmrna26805	scaffold_16:13719558-13720042(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g02590.1	"retrotransposon protein, putative, unclassified"	Medtr2g010050.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.213755.1.S1_s_at	E	E	pmrna26862	pmrna26862	scaffold_17:355858-356397(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213809.1.S1_at	E	E	pmrna26950	pmrna26950	NA	NA	NA	NA	AT4G05440.2	temperature sensing protein-related 	NA	NA	Medtr3g016630.1	D123 	NA	NA	NA
PtpAffx.213848.1.S1_at	E	E	pmrna27016	pmrna27016	scaffold_11:13099947-13100464(+) (9)//scaffold_17:6849031-6849261(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213852.1.S1_at	E	E	pmrna27023	pmrna27023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213875.1.S1_at	E	E	pmrna27062	pmrna27062	scaffold_17:10440542-10445810(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213890.1.S1_s_at	E	E	pmrna27086	pmrna27086	NA	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.213893.1.S1_at	E	E	pmrna27093	pmrna27093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213895.1.S1_at	E	E	pmrna27096	pmrna27096	scaffold_17:10890081-10890582(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213896.1.S1_at	E	E	pmrna27097	pmrna27097	scaffold_17:10895927-10896393(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213908.1.S1_at	E	E	pmrna27118	pmrna27118	scaffold_17:11146390-11146707(+) (9)//scaffold_1742:1614-1932(+) (10)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.213919.1.S1_at	E	E	pmrna27137	pmrna27137	scaffold_17:11399203-11399384(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213957.1.S1_at	E	E	pmrna27202	pmrna27202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213995.1.S1_at	E	E	pmrna27265	pmrna27265	scaffold_17:13099886-13100526(-) (10)	NA	NA	NA	AT3G29400.1	exocyst subunit exo70 family protein E1 	LOC_Os01g55799.3	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr3g036640.1	Exo70 exocyst complex subunit 	NA	NA	NA
PtpAffx.214018.1.S1_at	E	E	pmrna27301	pmrna27301	NA	NA	Q9SKI2	Vacuolar protein sorting-associated protein 2 homolog 1	AT2G06530.1	SNF7 family protein 	LOC_Os07g13270.1	"SNF7 domain containing protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.214019.1.S1_at	E	E	pmrna27302	pmrna27302	scaffold_18:7353892-7355101(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214023.1.S1_at	E	E	pmrna27310	pmrna27310	scaffold_18:7459157-7459780(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g020320.1	"RNA-directed DNA polymerase ; Ribonuclease H, related "	NA	NA	NA
PtpAffx.214030.1.S1_at	E	E	pmrna27318	pmrna27318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214043.1.S1_s_at	E	E	pmrna27343	pmrna27343	scaffold_18:8190701-8191398(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214044.1.S1_at	E	E	pmrna27344	pmrna27344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214079.1.S1_at	E	E	pmrna27416	pmrna27416	scaffold_18:4785570-4785704(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214088.1.S1_at	E	E	pmrna27429	pmrna27429	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	AC235679_5.1	"Protein ycf2, putative AC235679.1 7150-7750 F EGN_Mt090430 200"	NA	NA	NA
PtpAffx.214098.1.S1_at	E	E	pmrna27444	pmrna27444	scaffold_18:9500813-9501157(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214122.1.S1_at	E	E	pmrna27489	pmrna27489	NA	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os02g37790.1	"retrotransposon protein, putative, unclassified"	Medtr5g089840.1	"copia LTR rider, related "	NA	NA	NA
PtpAffx.214124.1.S1_at	E	E	pmrna27493	pmrna27493	NA	NA	Q06FW5	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38229.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g169540.1	Photosystem I psaA 	NA	NA	NA
PtpAffx.214124.1.S1_x_at	E	E	pmrna27493	pmrna27493	NA	NA	Q06FW5	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38229.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g169540.1	Photosystem I psaA 	NA	NA	NA
PtpAffx.214125.1.S1_s_at	E	E	pmrna27494	pmrna27494	NA	NA	Q6EW21	Cytochrome b6-f complex subunit 4	ATCG00730.1	photosynthetic electron transfer D 	LOC_Os10g21326.1	"cytochrome b6-f complex subunit 4, putative"	Medtr4g042520.1	"Cytochrome b/b6, C-terminal; Photosynthetic reaction centre protein cytochrome b6/f_IV "	NA	NA	NA
PtpAffx.214129.1.S1_at	E	E	pmrna27499	pmrna27499	scaffold_209:12307-12846(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.214277.1.S1_at	E	E	pmrna27777	pmrna27777	scaffold_17:8002454-8002739(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214334.1.S1_s_at	E	E	pmrna27876	pmrna27876	scaffold_18:9650909-9651073(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214369.1.S1_at	E	E	pmrna27958	pmrna27958	scaffold_18:10532279-10532728(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g30340.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.214371.1.S1_at	E	E	pmrna27960	pmrna27960	scaffold_18:10566403-10566995(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g23230.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr3g059250.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.214376.1.S1_at	E	E	pmrna27976	pmrna27976	scaffold_18:10946993-10947120(-) (11)	NA	P29357	Chloroplast envelope membrane 70 kDa heat shock-related protein	AT3G09440.2	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os11g47760.5	"DnaK family protein, putative, expressed"	Medtr7g025840.1	Heat shock protein Hsp70 	NA	NA	NA
PtpAffx.214380.1.S1_at	E	E	pmrna27984	pmrna27984	scaffold_18:11053509-11053655(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214427.1.S1_at	E	E	pmrna28059	pmrna28059	scaffold_18:11697727-11697924(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214459.1.S1_at	E	E	pmrna28114	pmrna28114	scaffold_18:12146159-12146575(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214471.1.S1_at	E	E	pmrna28145	pmrna28145	NA	NA	Q00IB6	RNA polymerase II C-terminal domain phosphatase-like 4	AT5G58003.1	C-terminal domain phosphatase-like 4 	LOC_Os05g32430.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g055870.1	BRCT; NLI interacting factor 	NA	NA	NA
PtpAffx.214504.1.S1_at	E	E	pmrna28208	pmrna28208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214505.1.S1_at	E	E	pmrna28209	pmrna28209	scaffold_18:12845580-12846743(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214509.1.S1_at	E	E	pmrna28218	pmrna28218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214536.1.S1_at	E	E	pmrna28250	pmrna28250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214536.1.S1_s_at	E	E	pmrna28250	pmrna28250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214536.1.S1_x_at	E	E	pmrna28250	pmrna28250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214537.1.S1_x_at	E	E	pmrna28251	pmrna28251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214581.1.S1_at	E	E	pmrna28346	pmrna28346	scaffold_18:13664396-13664834(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214586.1.S1_at	E	E	pmrna28355	pmrna28355	NA	NA	P43293	Probable serine/threonine-protein kinase NAK	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g44920.1	protein kinase domain containing protein	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	NA	NA	NA
PtpAffx.214612.1.S1_at	E	E	pmrna28393	pmrna28393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214624.1.S1_at	E	E	pmrna28419	pmrna28419	scaffold_18:14354087-14354438(-) (11)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	NA	NA	NA
PtpAffx.214634.1.S1_at	E	E	pmrna28433	pmrna28433	NA	NA	P50368	NADH-ubiquinone oxidoreductase chain 5	ATMG00665.1	NADH dehydrogenase 5B 	LOC_Os10g21418.1	"NADPH-dependent oxidoreductase, putative"	Medtr1g007860.1	"NADH-ubiquinone oxidoreductase, chain 5 "	NA	NA	NA
PtpAffx.214637.1.S1_at	E	E	pmrna28436	pmrna28436	NA	NA	P44098	Putative glutamine amidotransferase HI_1037	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214649.1.S1_s_at	E	E	pmrna28451	pmrna28451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214659.1.S1_a_at	E	E	pmrna28468	pmrna28468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214660.1.S1_at	E	E	pmrna28469	pmrna28469	NA	NA	P70795	Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214663.1.S1_s_at	E	E	pmrna28472	pmrna28472	NA	NA	NA	NA	NA	NA	LOC_Os03g38490.1	"DAG protein, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.214667.1.S1_at	E	E	pmrna28477	pmrna28477	NA	NA	P05478	18.5 kDa class I heat shock protein	AT5G59720.1	heat shock protein 18.2 	LOC_Os03g16030.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067320.1	HSP20-like chaperone 	NA	NA	NA
PtpAffx.214668.1.S1_a_at	E	E	pmrna28478	pmrna28478	NA	NA	P71019	Malonyl CoA-acyl carrier protein transacylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214668.1.S1_at	E	E	pmrna28478	pmrna28478	NA	NA	P71019	Malonyl CoA-acyl carrier protein transacylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214680.1.S1_at	E	E	pmrna28497	pmrna28497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214685.1.S1_at	E	E	pmrna28503	pmrna28503	NA	NA	P02255	Histone H1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214690.1.S1_at	E	E	pmrna28508	pmrna28508	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214697.1.S1_s_at	E	E	pmrna28515	pmrna28515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214702.1.S1_at	E	E	pmrna28523	pmrna28523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214710.1.S1_at	E	E	pmrna28534	pmrna28534	NA	NA	NA	NA	AT4G19470.1	Leucine-rich repeat (LRR) family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214710.1.S1_x_at	E	E	pmrna28534	pmrna28534	NA	NA	NA	NA	AT4G19470.1	Leucine-rich repeat (LRR) family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214719.1.S1_at	E	E	pmrna28546	pmrna28546	NA	NA	O35115	Four and a half LIM domains protein 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214728.1.S1_at	E	E	pmrna28556	pmrna28556	NA	NA	Q9LRR5	Putative disease resistance protein At3g14460	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr3g021730.1	NB-ARC 	NA	NA	NA
PtpAffx.214728.1.S1_x_at	E	E	pmrna28556	pmrna28556	NA	NA	Q9LRR5	Putative disease resistance protein At3g14460	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr3g021730.1	NB-ARC 	NA	NA	NA
PtpAffx.214732.1.S1_at	E	E	pmrna28562	pmrna28562	scaffold_6:23937401-23937584(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214734.1.S1_s_at	E	E	pmrna28565	pmrna28565	scaffold_1214:459-794(+) (11)	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g13540.1	"retrotransposon protein, putative, unclassified"	Medtr7g123950.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.214735.1.S1_at	E	E	pmrna28566	pmrna28566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214744.1.S1_at	E	E	pmrna28577	pmrna28577	scaffold_10:10527619-10527786(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214761.1.S1_at	E	E	pmrna28598	pmrna28598	scaffold_1:33458373-33458527(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214766.1.S1_at	E	E	pmrna28606	pmrna28606	scaffold_2:85892-85973(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214766.1.S1_x_at	E	E	pmrna28606	pmrna28606	scaffold_2:85885-86048(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214768.1.S1_at	E	E	pmrna28610	pmrna28610	scaffold_13:9923892-9923925(+) (10)	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.214768.1.S1_x_at	E	E	pmrna28610	pmrna28610	scaffold_13:9923746-9924109(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.214771.1.S1_at	E	E	pmrna28613	pmrna28613	scaffold_19:14547372-14547743(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g42370.1	"retrotransposon protein, putative, unclassified"	Medtr2g006470.1	"RNA-directed DNA polymerase (reverse transcriptase), related "	NA	NA	NA
PtpAffx.214788.1.S1_at	E	E	pmrna28636	pmrna28636	NA	NA	P22608	Type 4 fimbrial assembly protein pilB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214791.1.S1_s_at	E	E	pmrna28640	pmrna28640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214799.1.S1_at	E	E	pmrna28650	pmrna28650	NA	NA	Q9UT92	Uncharacterized transporter C323.07c	AT1G15150.1	MATE efflux family protein 	LOC_Os01g31980.2	"MATE efflux family protein, putative, expressed"	Medtr1g138190.1	Multi antimicrobial extrusion protein MatE 	NA	NA	NA
PtpAffx.214802.1.S1_x_at	E	E	pmrna28653	pmrna28653	scaffold_1:40175767-40176043(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214819.1.S1_at	E	E	pmrna28686	pmrna28686	scaffold_1:40664079-40664501(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214830.1.S1_at	E	E	pmrna28707	pmrna28707	scaffold_1:40853464-40854038(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214861.1.S1_at	E	E	pmrna28766	pmrna28766	NA	NA	P13510	Cobalt-zinc-cadmium resistance protein CzcB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214867.1.S1_at	E	E	pmrna28776	pmrna28776	NA	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os05g47970.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	NA	NA	NA
PtpAffx.21490.2.S1_at	E	E	CX653568	CX653568	scaffold_10:9521875-9521911(+) (11)//scaffold_770:2544-2580(+) (11)//scaffold_9:4002510-4002546(+) (11)	NA	NA	NA	AT5G43580.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr1g090000.1	"Proteinase inhibitor I13, potato inhibitor I "	NA	NA	NA
PtpAffx.214900.1.S1_at	E	E	pmrna28817	pmrna28817	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr4g062150.1	Chloroplast Ycf2 	NA	NA	NA
PtpAffx.214903.1.S1_x_at	E	E	pmrna28820	pmrna28820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214905.1.S1_at	E	E	pmrna28822	pmrna28822	scaffold_1:8368370-8368525(+) (11)//scaffold_1423:5229-5384(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214906.1.S1_at	E	E	pmrna28823	pmrna28823	NA	NA	Q9K1H0	Outer membrane protein omp85	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214915.1.S1_at	E	E	pmrna28832	pmrna28832	NA	NA	O07931	Uncharacterized protein yraM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214923.1.S1_at	E	E	pmrna28844	pmrna28844	NA	NA	Q9SA98	Alpha-ketoglutarate-dependent dioxygenase alkB	AT1G11780.1	"oxidoreductase, 2OG-Fe(II) oxygenase family protein "	NA	NA	Medtr3g103890.1	"Alkylated DNA repair protein alkB homolog, putative "	NA	NA	NA
PtpAffx.214924.1.S1_at	E	E	pmrna28847	pmrna28847	scaffold_18:1343899-1344343(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214931.1.S1_at	E	E	pmrna28856	pmrna28856	NA	NA	Q51466	Flagellar motor switch protein FliN	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214936.1.S1_at	E	E	pmrna28865	pmrna28865	NA	NA	NA	NA	NA	NA	LOC_Os08g10770.1	"retrotransposon protein, putative, unclassified"	Medtr3g147120.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.214954.1.S1_at	E	E	pmrna28886	pmrna28886	scaffold_4:4294101-4294358(-) (9)//scaffold_6:24800093-24800350(-) (9)//scaffold_88:71924-72181(+) (9)	NA	P49332	Probable glutathione S-transferase parC	AT1G17180.1	glutathione S-transferase TAU 25 	NA	NA	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	NA	NA	NA
PtpAffx.214956.1.S1_at	E	E	pmrna28888	pmrna28888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214957.1.S1_at	E	E	pmrna28889	pmrna28889	NA	NA	P14147	Virulence sensor histidine kinase phoQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214960.1.S1_at	E	E	pmrna28893	pmrna28893	NA	NA	P35072	Transposable element Tcb1 transposase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214964.1.S1_at	E	E	pmrna28898	pmrna28898	NA	NA	A0QBR0	Signal transduction histidine-protein kinase/phosphatase mprB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214974.1.S1_at	E	E	pmrna28909	pmrna28909	NA	NA	C6E0H6	Nucleoside diphosphate kinase	AT4G23895.3	Pleckstrin homology (PH) domain-containing protein 	LOC_Os05g51700.2	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.2	Nucleoside diphosphate kinase 	NA	NA	NA
PtpAffx.214975.1.S1_s_at	E	E	pmrna28910	pmrna28910	scaffold_4:2988329-2988914(+) (11)//scaffold_4:22076261-22076846(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g25640.1	"retrotransposon protein, putative, unclassified"	Medtr3g162430.1	"RNA-directed DNA polymerase (Reverse transcriptase); Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.214983.1.S1_s_at	E	E	pmrna28919	pmrna28919	scaffold_3:8377769-8377819(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214990.1.S1_s_at	E	E	pmrna28926	pmrna28926	scaffold_5:1464044-1464150(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214993.1.S1_at	E	E	pmrna28931	pmrna28931	NA	NA	NA	NA	AT1G17680.2	tetratricopeptide repeat (TPR)-containing protein 	NA	NA	Medtr4g109240.1	Tetratricopeptide-like helical 	NA	NA	NA
PtpAffx.215007.1.S1_s_at	E	E	pmrna28948	pmrna28948	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr4g062150.1	Chloroplast Ycf2 	NA	NA	NA
PtpAffx.215009.1.S1_a_at	E	E	pmrna28951	pmrna28951	scaffold_1:21981430-21981466(-) (9)//scaffold_1:21981889-21982372(-) (9)//scaffold_1:25704688-25704724(+) (9)//scaffold_1:34940420-34940456(+) (9)//scaffold_1084:906-942(-) (9)//scaffold_1084:1637-1673(-) (9)//scaffold_1084:1770-1806(-) (9)//scaffold_11:8882566-8882602(-) (9)//scaffold_11:8882832-8882868(-) (9)//scaffold_11:8890839-8890875(+) (9)//scaffold_12:5150882-5150918(+) (9)//scaffold_12:5151027-5151249(+) (9)//scaffold_12:5151226-5151448(+) (9)//scaffold_14:16320309-16324646(+) (9)//scaffold_14:16320572-16326374(+) (9)//scaffold_15:3352934-3353169(-) (9)//scaffold_16:6821609-6821645(-) (9)//scaffold_17:8240853-8241074(-) (11)//scaffold_17:8241053-8241089(-) (9)//scaffold_17:8241262-8241482(-) (9)//scaffold_1737:4471-4890(+) (9)//scaffold_1737:4858-5089(+) (9)//scaffold_19:1107064-1107100(-) (9)//scaffold_19:1107463-1107499(-) (9)//scaffold_19:6995348-6995384(-) (9)//scaffold_2:23483033-23483069(-) (9)//scaffold_2:23483232-23483268(-) (9)//scaffold_20:730986-731022(+) (9)//scaffold_32:230488-230524(+) (9)//scaffold_4:20712404-20712440(+) (9)//scaffold_4:20713001-20713037(+) (9)//scaffold_4:20713200-20713236(+) (9)//scaffold_4:20713397-20713433(+) (9)//scaffold_5:618496-619329(-) (9)//scaffold_5:619096-619857(-) (9)//scaffold_5:10659311-10659347(-) (9)//scaffold_5:10659444-10659480(-) (9)//scaffold_5:15668670-15668706(+) (9)//scaffold_5:15668869-15668905(+) (9)//scaffold_5:15669001-15669037(+) (9)//scaffold_5:15669200-15669236(+) (9)//scaffold_567:14107-14143(+) (9)//scaffold_65:68904-68940(-) (9)//scaffold_65:79509-79545(-) (9)//scaffold_65:79588-80075(-) (9)//scaffold_65:79854-80407(-) (9)//scaffold_690:9985-10027(+) (11)//scaffold_7:7079220-7079256(-) (9)//scaffold_7:8472184-8472614(+) (9)//scaffold_7:8472580-8472937(+) (9)//scaffold_77:33378-33414(+) (9)//scaffold_77:33577-33613(+) (9)//scaffold_77:33776-33812(+) (9)//scaffold_795:9995-10031(-) (9)//scaffold_795:10270-10622(-) (9)//scaffold_841:988-1728(-) (11)//scaffold_841:1441-1741(-) (9)//scaffold_841:1707-2205(-) (9)//scaffold_918:469-505(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215009.1.S1_x_at	E	E	pmrna28951	pmrna28951	scaffold_690:9960-10077(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215012.1.S1_x_at	E	E	pmrna28956	pmrna28956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215016.1.S1_at	E	E	pmrna28961	pmrna28961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215028.1.S1_at	E	E	pmrna28975	pmrna28975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215043.1.S1_at	E	E	pmrna28995	pmrna28995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215044.1.S1_s_at	E	E	pmrna28996	pmrna28996	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr4g062150.1	Chloroplast Ycf2 	NA	NA	NA
PtpAffx.215052.1.S1_at	E	E	pmrna29004	pmrna29004	scaffold_19:3046749-3047171(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215061.1.S1_at	E	E	pmrna29020	pmrna29020	scaffold_19:1104974-1105970(+) (9)//scaffold_19:1115619-1116615(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215062.1.S1_at	E	E	pmrna29021	pmrna29021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215065.1.S1_at	E	E	pmrna29024	pmrna29024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215086.1.S1_at	E	E	pmrna29061	pmrna29061	NA	NA	Q08017	Ferric-pseudobactin M114 receptor pbuA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215087.1.S1_at	E	E	pmrna29062	pmrna29062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215091.1.S1_at	E	E	pmrna29066	pmrna29066	NA	NA	P11461	Ferric anguibactin receptor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215094.1.S1_x_at	E	E	pmrna29069	pmrna29069	scaffold_1:42294612-42294809(+) (9)//scaffold_1:45373347-45373544(+) (9)//scaffold_11:6588316-6588513(+) (9)//scaffold_112:58264-58461(-) (9)//scaffold_15:14437150-14437347(-) (9)//scaffold_19:12738943-12739480(+) (11)//scaffold_43:57112-57649(+) (11)//scaffold_46:169761-170298(+) (11)//scaffold_75:75509-76046(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215104.1.S1_at	E	E	pmrna29083	pmrna29083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215123.1.S1_at	E	E	pmrna29128	pmrna29128	NA	NA	Q9SLH7	Peroxidase 20	AT2G35380.1	Peroxidase superfamily protein 	LOC_Os01g15830.1	"peroxidase precursor, putative, expressed"	Medtr5g014310.1	"Haem peroxidase, plant/fungal/bacterial "	NA	NA	NA
PtpAffx.215125.1.S1_at	E	E	pmrna29130	pmrna29130	scaffold_614:12874-13426(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g140870.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.215151.1.S1_at	E	E	pmrna29189	pmrna29189	NA	NA	Q9JKJ9	24-hydroxycholesterol 7-alpha-hydroxylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215157.1.S1_at	E	E	pmrna29195	pmrna29195	scaffold_14:10037178-10037464(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215170.1.S1_at	E	E	pmrna29212	pmrna29212	NA	NA	Q2SEX9	Flagellar P-ring protein 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215172.1.S1_at	E	E	pmrna29214	pmrna29214	NA	NA	A4GYW4	"NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic"	ATCG01010.1	"NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein "	LOC_Os10g21418.1	"NADPH-dependent oxidoreductase, putative"	Medtr7g021690.1	"NADH-plastoquinone oxidoreductase, chain 5 "	NA	NA	NA
PtpAffx.215173.1.S1_s_at	E	E	pmrna29215	pmrna29215	NA	NA	A4GYW5	Cytochrome c biogenesis protein ccsA	ATCG01040.1	Cytochrome C assembly protein 	LOC_Os06g46434.1	"cytochrome c biogenesis protein ccsA, putative"	Medtr4g022890.1	Cytochrome c assembly protein 	NA	NA	NA
PtpAffx.215174.1.S1_s_at	E	E	pmrna29217	pmrna29217	NA	NA	A4GYX4	Putative membrane protein ycf1	ATCG01130.1	Ycf1 protein 	NA	NA	Medtr7g021570.1	"Putative membrane protein ycf1, "	NA	NA	NA
PtpAffx.215178.1.S1_s_at	E	E	pmrna29222	pmrna29222	scaffold_15:1923449-1923688(-) (11)	NA	P10330	NADH-ubiquinone oxidoreductase chain 5	ATMG00665.1	NADH dehydrogenase 5B 	NA	NA	Medtr1g007860.1	"NADH-ubiquinone oxidoreductase, chain 5 "	NA	NA	NA
PtpAffx.215181.1.S1_at	E	E	pmrna29225	pmrna29225	scaffold_15:1937848-1937924(+) (10)//scaffold_15:2047739-2047815(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215185.1.S1_at	E	E	pmrna29232	pmrna29232	scaffold_1:17653641-17654070(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215212.1.S1_s_at	E	E	pmrna29267	pmrna29267	NA	NA	A4GYX4	Putative membrane protein ycf1	ATCG01000.1	Ycf1 protein 	NA	NA	Medtr5g088230.1	Ycf1 	NA	NA	NA
PtpAffx.215213.1.S1_at	E	E	pmrna29268	pmrna29268	NA	NA	P52046	3-hydroxybutyryl-CoA dehydratase	AT4G16800.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os02g43720.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g105120.1	Enoyl-CoA hydratase/isomerase 	NA	NA	NA
PtpAffx.215219.1.S1_at	E	E	pmrna29278	pmrna29278	NA	NA	NA	NA	NA	NA	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.215224.1.S1_at	E	E	pmrna29287	pmrna29287	scaffold_19:14661762-14662185(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215226.1.S1_at	E	E	pmrna29289	pmrna29289	scaffold_19:14634794-14635163(+) (11)	NA	NA	NA	NA	NA	LOC_Os11g14520.1	conserved hypothetical protein	NA	NA	NA	NA	NA
PtpAffx.215229.1.S1_s_at	E	E	pmrna29293	pmrna29293	NA	NA	NA	NA	AT4G03500.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g092930.1	Ankyrin 	NA	NA	NA
PtpAffx.215282.1.S1_at	E	E	pmrna29376	pmrna29376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215290.1.S1_at	E	E	pmrna29384	pmrna29384	NA	NA	Q9A5I5	Response regulator PleD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215291.1.S1_at	E	E	pmrna29385	pmrna29385	NA	NA	Q9AIX6	Benzoyl-CoA oxygenase component A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215292.1.S1_at	E	E	pmrna29386	pmrna29386	NA	NA	P29079	Aspartate racemase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215294.1.S1_at	E	E	pmrna29389	pmrna29389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215307.1.S1_at	E	E	pmrna29412	pmrna29412	scaffold_6:16509760-16510131(-) (11)	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.215316.1.S1_a_at	E	E	pmrna29436	pmrna29436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215329.1.S1_at	E	E	pmrna29449	pmrna29449	NA	NA	Q49KT9	Uncharacterized protein ycf68	NA	NA	NA	NA	CU179634_37.1	hypothetical protein CU179634.6 130769-131452 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.215329.1.S1_s_at	E	E	pmrna29449	pmrna29449	NA	NA	Q49KT9	Uncharacterized protein ycf68	NA	NA	NA	NA	CU179634_37.1	hypothetical protein CU179634.6 130769-131452 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.215331.1.S1_at	E	E	pmrna29455	pmrna29455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215364.1.S1_at	E	E	pmrna29507	pmrna29507	scaffold_15:5789550-5790713(-) (10)	NA	NA	NA	AT1G73530.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215367.1.S1_at	E	E	pmrna29513	pmrna29513	scaffold_15:5744044-5744585(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215389.1.S1_at	E	E	pmrna29548	pmrna29548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215392.1.S1_at	E	E	pmrna29551	pmrna29551	NA	NA	P02942	Methyl-accepting chemotaxis protein I	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215393.1.S1_at	E	E	pmrna29552	pmrna29552	scaffold_12:4761298-4761445(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215394.1.S1_at	E	E	pmrna29554	pmrna29554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215406.1.S1_at	E	E	pmrna29568	pmrna29568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215414.1.S1_at	E	E	pmrna29579	pmrna29579	NA	NA	Q8VWF8	"DNA-directed RNA polymerase 2, chloroplastic/mitochondrial"	AT5G15700.1	DNA/RNA polymerases superfamily protein 	LOC_Os09g07120.1	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077210.1	"DNA-directed RNA polymerase, bacteriophage type "	NA	NA	NA
PtpAffx.215441.1.S1_at	E	E	pmrna29634	pmrna29634	scaffold_17:14136942-14137324(-) (11)	NA	NA	NA	AT1G67265.1	ROTUNDIFOLIA like 21 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215472.1.S1_at	E	E	pmrna29687	pmrna29687	NA	NA	P10799	Wide host range virA protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215480.1.S1_at	E	E	pmrna29698	pmrna29698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215525.1.S1_at	E	E	pmrna29771	pmrna29771	scaffold_11:5551271-5552080(-) (9)	NA	Q9FN32	Protein yippee-like At5g53940	AT5G53940.1	Yippee family putative zinc-binding protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215541.1.S1_at	E	E	pmrna29798	pmrna29798	NA	NA	P30864	Uncharacterized HTH-type transcriptional regulator yafC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215547.1.S1_at	E	E	pmrna29807	pmrna29807	scaffold_2112:1628-1876(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215548.1.S1_x_at	E	E	pmrna29808	pmrna29808	NA	NA	A4GYT6	ATP-dependent Clp protease proteolytic subunit	ATCG00670.1	plastid-encoded CLP P 	LOC_Os12g10590.1	OsClp13 - Putative Clp protease homologue	Medtr4g042480.1	"Peptidase S14, ClpP "	NA	NA	NA
PtpAffx.215551.1.S1_at	E	E	pmrna29811	pmrna29811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215560.1.S1_at	E	E	pmrna29825	pmrna29825	scaffold_19:11311755-11312017(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215561.1.S1_at	E	E	pmrna29827	pmrna29827	NA	NA	Q9C8Y3	DELLA protein RGL1	AT1G66350.1	RGA-like 1 	LOC_Os11g31100.1	"gibberellin response modulator protein, putative"	Medtr2g038340.1	GRAS transcription factor 	NA	NA	NA
PtpAffx.215615.1.S1_s_at	E	E	pmrna29906	pmrna29906	scaffold_6:25005888-25006211(-) (11)	NA	NA	NA	AT1G15370.1	SNARE-like superfamily protein 	NA	NA	Medtr2g126320.1	Longin-like 	NA	NA	NA
PtpAffx.215622.1.S1_at	E	E	pmrna29914	pmrna29914	scaffold_19:1433197-1433654(-) (10)//scaffold_879:8041-8503(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215627.1.S1_at	E	E	pmrna29919	pmrna29919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215627.1.S1_x_at	E	E	pmrna29919	pmrna29919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215630.1.S1_at	E	E	pmrna29922	pmrna29922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215638.1.S1_at	E	E	pmrna29932	pmrna29932	NA	NA	Q82S73	Peptide chain release factor 3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21564.1.A1_at	E	E	BU865734	BU865734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215641.1.S1_at	E	E	pmrna29936	pmrna29936	NA	NA	Q9HZ95	tRNA-dihydrouridine synthase C	AT3G49640.2	Aldolase-type TIM barrel family protein 	LOC_Os04g44890.3	"tRNA-dihydrouridine synthase, putative, expressed"	Medtr8g078600.1	"Dihydrouridine synthase, DuS "	NA	NA	NA
PtpAffx.215642.1.S1_at	E	E	pmrna29937	pmrna29937	NA	NA	P16919	Protein rhsD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215678.1.S1_at	E	E	pmrna30024	pmrna30024	NA	NA	Q58CV5	Sugar phosphate exchanger 2	AT3G47420.1	phosphate starvation-induced gene 3 	LOC_Os04g46880.2	"transporter, major facilitator family, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.215686.1.S1_at	E	E	pmrna30035	pmrna30035	NA	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	NA	NA	NA
PtpAffx.215686.1.S1_x_at	E	E	pmrna30035	pmrna30035	NA	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr4g110940.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	NA	NA	NA
PtpAffx.215717.1.S1_at	E	E	pmrna30071	pmrna30071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215722.1.S1_at	E	E	pmrna30079	pmrna30079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215740.1.S1_at	E	E	pmrna30106	pmrna30106	NA	NA	NA	NA	NA	NA	LOC_Os02g49050.2	"transmembrane 9 superfamily member, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.215760.1.S1_at	E	E	pmrna30140	pmrna30140	scaffold_3:19868486-19868744(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g39920.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.215769.1.S1_at	E	E	pmrna30150	pmrna30150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215769.1.S1_x_at	E	E	pmrna30150	pmrna30150	scaffold_180:26133-26567(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215770.1.S1_at	E	E	pmrna30151	pmrna30151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215773.1.S1_at	E	E	pmrna30158	pmrna30158	scaffold_2112:2592-3113(+) (11)	NA	NA	NA	NA	NA	LOC_Os04g50830.1	"retrotransposon protein, putative, LINE subclass"	Medtr3g064910.1	Endonuclease/exonuclease/phosphatase 	NA	NA	NA
PtpAffx.215774.1.S1_at	E	E	pmrna30159	pmrna30159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215798.1.S1_at	E	E	pmrna30192	pmrna30192	scaffold_4:15911244-15911790(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g25640.1	"retrotransposon protein, putative, unclassified"	AC233082_3.1	"RNA-directed DNA polymerase (Reverse transcriptase); Peptidase aspartic, active site; Retrotransposon gag protein AC233082.3 19216-16757 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.215823.1.S1_at	E	E	pmrna30236	pmrna30236	scaffold_4:15420403-15420593(-) (11)	NA	Q9LDD8	"Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial"	AT4G34030.1	3-methylcrotonyl-CoA carboxylase 	LOC_Os08g32850.2	"methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed"	Medtr4g129940.1	"Acetyl-coenzyme A carboxyltransferase, C-terminal "	NA	NA	NA
PtpAffx.215823.1.S1_x_at	E	E	pmrna30236	pmrna30236	scaffold_4:15420403-15420569(-) (10)	NA	Q9LDD8	"Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial"	AT4G34030.1	3-methylcrotonyl-CoA carboxylase 	LOC_Os08g32850.2	"methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed"	Medtr4g129940.1	"Acetyl-coenzyme A carboxyltransferase, C-terminal "	NA	NA	NA
PtpAffx.215836.1.S1_at	E	E	pmrna30252	pmrna30252	NA	NA	Q7QJT4	Protein prickle	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215847.1.S1_at	E	E	pmrna30264	pmrna30264	scaffold_1:12707868-12708032(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215907.1.S1_at	E	E	pmrna30371	pmrna30371	scaffold_5:971568-972007(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215930.1.S1_at	E	E	pmrna30405	pmrna30405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215940.1.S1_x_at	E	E	pmrna30418	pmrna30418	scaffold_8:17601927-17602495(+) (10)	NA	NA	NA	NA	NA	LOC_Os11g36860.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.215947.1.S1_at	E	E	pmrna30427	pmrna30427	scaffold_8:17492931-17493582(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215982.1.S1_a_at	E	E	pmrna30478	pmrna30478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215982.1.S1_x_at	E	E	pmrna30478	pmrna30478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215984.1.S1_x_at	E	E	pmrna30480	pmrna30480	scaffold_19:1142643-1142996(+) (9)//scaffold_19:1151449-1151802(+) (9)//scaffold_762:10394-10747(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215986.1.S1_at	E	E	pmrna30482	pmrna30482	scaffold_11:1163547-1163650(-) (9)//scaffold_11:11725448-11725551(+) (11)//scaffold_14:484115-484218(-) (9)//scaffold_6:26161698-26161801(+) (9)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.215993.1.S1_at	E	E	pmrna30493	pmrna30493	scaffold_5:1789971-1790780(+) (10)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os05g05700.1	"cullin, putative, expressed"	Medtr8g139160.2	Cullin; Winged helix repressor DNA-binding 	NA	NA	NA
PtpAffx.216.1.A1_at	E	E	DN485363	DN485363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216035.1.S1_at	E	E	pmrna30583	pmrna30583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216080.1.S1_s_at	E	E	pmrna30645	pmrna30645	scaffold_1:27829000-27829178(+) (11)//scaffold_11:9049872-9050050(-) (10)	NA	NA	NA	NA	NA	LOC_Os01g06680.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	NA	NA	NA
PtpAffx.216083.1.S1_at	E	E	pmrna30649	pmrna30649	scaffold_1:41819900-41820326(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g21350.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.216087.1.S1_at	E	E	pmrna30655	pmrna30655	scaffold_1:41702043-41702451(+) (11)	NA	NA	NA	AT5G48050.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g54290.1	"retrotransposon protein, putative, unclassified"	Medtr7g123950.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.216119.1.S1_at	E	E	pmrna30704	pmrna30704	NA	NA	Q9FYC7	Putative phospholipid:diacylglycerol acyltransferase 2	AT3G44830.1	Lecithin:cholesterol acyltransferase family protein 	LOC_Os09g27210.1	"lecithine cholesterol acyltransferase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.216143.1.S1_at	E	E	pmrna30748	pmrna30748	scaffold_14:96293-97982(-) (10)	NA	NA	NA	AT3G13020.1	hAT transposon superfamily protein 	LOC_Os01g12280.2	"hAT dimerisation domain-containing protein, putative, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
PtpAffx.216152.1.S1_at	E	E	pmrna30762	pmrna30762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216153.1.S1_at	E	E	pmrna30763	pmrna30763	NA	NA	P52662	HTH-type transcriptional regulator pecT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216163.1.S1_at	E	E	pmrna30777	pmrna30777	scaffold_10:8063563-8064090(+) (10)	NA	NA	NA	NA	NA	LOC_Os11g44150.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr6g077370.1	"Zinc finger, CCHC-type; Retrotransposon gag protein "	NA	NA	NA
PtpAffx.216170.1.S1_at	E	E	pmrna30788	pmrna30788	NA	NA	Q9HM14	ATP-dependent DNA helicase Ta0057	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216178.1.S1_at	E	E	pmrna30796	pmrna30796	NA	NA	Q9WWZ9	Toluene efflux pump periplasmic linker protein ttgA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216211.1.S1_s_at	E	E	pmrna30858	pmrna30858	scaffold_14:14906346-14906504(-) (11)//scaffold_525:9733-9891(-) (11)//scaffold_8:12666548-12666706(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216212.1.S1_at	E	E	pmrna30859	pmrna30859	scaffold_1:22493785-22493821(+) (11)//scaffold_102:18629-18665(+) (11)//scaffold_11:7220303-7220339(+) (10)//scaffold_12:6706098-6706134(+) (11)//scaffold_14:14906291-14906327(-) (11)//scaffold_14:16943947-16943983(-) (11)//scaffold_19:1771912-1771948(+) (11)//scaffold_2:20329506-20329542(+) (10)//scaffold_274:18828-18864(+) (9)//scaffold_3:2215744-2215780(+) (11)//scaffold_525:9678-9714(-) (11)//scaffold_7:4689599-4689635(-) (11)//scaffold_8:4556826-4556862(-) (11)//scaffold_8:12666725-12666761(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216216.1.S1_at	E	E	pmrna30864	pmrna30864	NA	NA	NA	NA	AT4G01870.1	tolB protein-related 	LOC_Os07g44410.1	"WD40-like Beta Propeller Repeat family protein, expressed"	AC233676_36.1	"TolB, C-terminal AC233676.2 140571-138396 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.216226.1.S1_at	E	E	pmrna30877	pmrna30877	scaffold_1:43444377-43444562(-) (10)//scaffold_14:17545776-17546010(-) (11)//scaffold_14:17595938-17596172(-) (9)//scaffold_14:17674404-17674599(-) (10)//scaffold_14:17696344-17696578(+) (11)//scaffold_17:2262503-2272392(-) (11)//scaffold_17:2291050-2291284(-) (11)//scaffold_17:2310886-2311120(-) (11)//scaffold_17:2348485-2348670(-) (10)//scaffold_17:2361007-2361240(-) (10)//scaffold_8:16158782-16159016(+) (11)//scaffold_8:16169811-16170045(+) (11)//scaffold_9:222108-222303(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216232.1.S1_at	E	E	pmrna30885	pmrna30885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216246.1.S1_at	E	E	pmrna30900	pmrna30900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216246.1.S1_x_at	E	E	pmrna30900	pmrna30900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216258.1.S1_at	E	E	pmrna30915	pmrna30915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216273.1.S1_at	E	E	pmrna30932	pmrna30932	NA	NA	C5BB03	Protein fdhE homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216274.1.S1_s_at	E	E	pmrna30937	pmrna30937	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr4g062150.1	Chloroplast Ycf2 	NA	NA	NA
PtpAffx.216277.1.S1_at	E	E	pmrna30940	pmrna30940	scaffold_19:11782301-11782593(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216296.1.S1_at	E	E	pmrna30980	pmrna30980	NA	NA	Q9FF99	Probable amino acid permease 7	AT5G23810.2	amino acid permease 7 	LOC_Os04g39489.2	"amino acid transporter, putative, expressed"	Medtr5g104470.1	"Amino acid transporter, transmembrane "	NA	NA	NA
PtpAffx.216324.1.S1_x_at	E	E	pmrna31034	pmrna31034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21633.1.S1_at	E	E	CV241381	CV241381	scaffold_15:11333818-11334041(-) (10)	NA	O22285	Probable methyltransferase PMT11	AT2G39750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g62800.1	"methyltransferase, putative, expressed"	Medtr5g088010.1	"Protein of unknown function DUF248, methyltransferase putative "	NA	NA	NA
PtpAffx.216336.1.S1_x_at	E	E	pmrna31050	pmrna31050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216349.1.S1_at	E	E	pmrna31066	pmrna31066	NA	NA	P93711	Caffeoyl-CoA O-methyltransferase	AT1G67980.1	caffeoyl-CoA 3-O-methyltransferase 	LOC_Os08g38900.3	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g160600.1	"O-methyltransferase, family 3 "	NA	NA	NA
PtpAffx.216351.1.S1_x_at	E	E	pmrna31069	pmrna31069	NA	NA	P0CD35	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043710.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.216354.1.S1_at	E	E	pmrna31073	pmrna31073	NA	NA	P05100	DNA-3-methyladenine glycosylase 1	AT5G44680.1	DNA glycosylase superfamily protein 	LOC_Os01g58550.1	"methyladenine glycosylase, putative, expressed"	Medtr2g085500.1	Methyladenine glycosylase 	NA	NA	NA
PtpAffx.216370.1.S1_at	E	E	pmrna31103	pmrna31103	scaffold_13:13906315-13907085(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216386.1.S1_at	E	E	pmrna31131	pmrna31131	scaffold_13:13702257-13702430(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216418.1.S1_at	E	E	pmrna31187	pmrna31187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216419.1.S1_at	E	E	pmrna31188	pmrna31188	NA	NA	P51174	"Long-chain specific acyl-CoA dehydrogenase, mitochondrial"	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.2	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	NA	NA	NA
PtpAffx.21642.3.S1_at	E	E	AI161611	AI161611	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g024610.1	TIR; Disease resistance protein 	NA	NA	NA
PtpAffx.216423.1.S1_at	E	E	pmrna31192	pmrna31192	NA	NA	Q3A241	Probable inorganic polyphosphate/ATP-NAD kinase	AT3G21070.1	NAD kinase 1 	LOC_Os11g08670.1	"NAD kinase, putative, expressed"	Medtr4g104490.1	ATP-NAD/AcoX kinase 	NA	NA	NA
PtpAffx.216427.1.S1_at	E	E	pmrna31197	pmrna31197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216442.1.S1_s_at	E	E	pmrna31219	pmrna31219	NA	NA	Q05994	Ribulose bisphosphate carboxylase large chain (Fragment)	ATCG00490.1	ribulose-bisphosphate carboxylases 	LOC_Os10g21268.1	"ribulose bisphosphate carboxylase large chain precursor, putative, expressed"	Medtr3g043740.1	"Ribulose bisphosphate carboxylase, large chain "	NA	NA	NA
PtpAffx.216449.1.S1_at	E	E	pmrna31228	pmrna31228	NA	NA	A4GYR5	"NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic"	ATCG00440.1	"NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein "	LOC_Os10g38206.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g169440.1	"NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 "	NA	NA	NA
PtpAffx.216450.1.S1_at	E	E	pmrna31230	pmrna31230	NA	NA	A4GYR1	Photosystem I assembly protein ycf3	NA	NA	LOC_Os10g38216.1	"photosystem I assembly protein ycf3, putative"	Medtr3g169490.1	"Photosystem I assembly protein ycf3, putative "	NA	NA	NA
PtpAffx.216450.1.S1_s_at	E	E	pmrna31230	pmrna31230	NA	NA	A4GYR1	Photosystem I assembly protein ycf3	NA	NA	LOC_Os10g38216.1	"photosystem I assembly protein ycf3, putative"	Medtr3g169490.1	"Photosystem I assembly protein ycf3, putative "	NA	NA	NA
PtpAffx.216453.1.S1_s_at	E	E	pmrna31234	pmrna31234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216454.1.S1_s_at	E	E	pmrna31235	pmrna31235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216455.1.S1_s_at	E	E	pmrna31236	pmrna31236	NA	NA	P60498	NADH-ubiquinone oxidoreductase chain 6	ATMG00270.1	NADH dehydrogenase 6 	LOC_Os12g34014.1	"NADH-ubiquinone oxidoreductase chain 6, putative"	NA	NA	NA	NA	NA
PtpAffx.216457.1.S1_at	E	E	pmrna31238	pmrna31238	NA	NA	P0A9H7	Cyclopropane-fatty-acyl-phospholipid synthase	NA	NA	NA	NA	Medtr3g139610.1	Methyltransferase type 11 	NA	NA	NA
PtpAffx.216458.1.S1_at	E	E	pmrna31239	pmrna31239	NA	NA	A1W5M0	UPF0060 membrane protein Ajs_1326	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216459.1.S1_at	E	E	pmrna31240	pmrna31240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216460.1.S1_at	E	E	pmrna31241	pmrna31241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216468.1.S1_at	E	E	pmrna31251	pmrna31251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216487.1.S1_at	E	E	pmrna31273	pmrna31273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216513.1.S1_at	E	E	pmrna31339	pmrna31339	NA	NA	Q5E9L7	Vacuolar protein sorting-associated protein 16 homolog	AT2G38020.2	vacuoleless1 (VCL1) 	LOC_Os01g47650.1	"vacuolar protein sorting-associated protein 16, putative, expressed"	Medtr3g061350.1	"Vps16, N-terminal "	NA	NA	NA
PtpAffx.216542.1.S1_at	E	E	pmrna31388	pmrna31388	scaffold_1:40133759-40133923(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216543.1.S1_at	E	E	pmrna31389	pmrna31389	NA	NA	C5CP58	Elongation factor G	AT1G62750.1	Translation elongation factor EFG/EF2 protein 	LOC_Os03g36780.1	"elongation factor, putative, expressed"	Medtr8g106340.1	"Elongation factor G, III and V "	NA	NA	NA
PtpAffx.216548.1.S1_at	E	E	pmrna31394	pmrna31394	NA	NA	Q58010	Uncharacterized protein MJ0590	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216551.1.S1_at	E	E	pmrna31398	pmrna31398	NA	NA	Q3ECW2	Cyclin-A3-4	AT1G47230.2	CYCLIN A3;4 	LOC_Os12g39210.1	"cyclin, putative, expressed"	Medtr1g023700.1	Cyclin-like; ; 	NA	NA	NA
PtpAffx.216591.1.S1_at	E	E	pmrna31472	pmrna31472	scaffold_6:26679145-26679296(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216606.1.S1_at	E	E	pmrna31506	pmrna31506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216607.1.S1_at	E	E	pmrna31507	pmrna31507	NA	NA	Q51397	Outer membrane protein oprJ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216636.1.S1_at	E	E	pmrna31547	pmrna31547	scaffold_1:23021838-23022408(+) (11)	NA	NA	NA	AT3G21000.1	Gag-Pol-related retrotransposon family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.216661.1.S1_at	E	E	pmrna31593	pmrna31593	scaffold_10:5490761-5490910(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216676.1.S1_at	E	E	pmrna31616	pmrna31616	scaffold_1:21758634-21759157(+) (11)//scaffold_215:23339-23608(-) (10)//scaffold_215:23582-23852(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216676.1.S1_x_at	E	E	pmrna31616	pmrna31616	scaffold_1:21758628-21759101(+) (11)//scaffold_215:23274-23434(-) (11)//scaffold_215:23335-23850(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216684.1.S1_at	E	E	pmrna31629	pmrna31629	scaffold_564:3793-4146(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216695.1.S1_at	E	E	pmrna31643	pmrna31643	NA	NA	Q02755	Methyl-accepting chemotaxis citrate transducer	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216697.1.S1_at	E	E	pmrna31645	pmrna31645	NA	NA	Q56145	Ferrioxamine B receptor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216703.1.S1_at	E	E	pmrna31654	pmrna31654	scaffold_3:565465-565607(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216738.1.S1_a_at	E	E	pmrna31720	pmrna31720	scaffold_12:10971020-10972088(+) (11)//scaffold_12:10971810-10973934(+) (11)//scaffold_12:10972366-10974241(+) (11)//scaffold_12:10973599-10976404(+) (10)//scaffold_12:10973881-10974899(+) (9)//scaffold_12:10974190-10975469(+) (9)//scaffold_460:4069-4770(+) (11)//scaffold_460:4376-5979(+) (11)//scaffold_460:4689-6605(+) (11)//scaffold_460:4996-7526(+) (11)//scaffold_460:5591-8442(+) (11)//scaffold_460:5898-8764(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216745.1.S1_x_at	E	E	pmrna31728	pmrna31728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216811.1.S1_at	E	E	pmrna31843	pmrna31843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216827.1.S1_s_at	E	E	pmrna31863	pmrna31863	scaffold_1367:558-1035(-) (11)	NA	P03554	Enzymatic polyprotein	NA	NA	LOC_Os12g42720.1	"retrotransposon protein, putative, unclassified"	Medtr5g062290.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.216836.1.S1_at	E	E	pmrna31874	pmrna31874	scaffold_11:10280783-10280980(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216836.1.S1_x_at	E	E	pmrna31874	pmrna31874	scaffold_11:10280783-10280980(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216838.1.S1_at	E	E	pmrna31876	pmrna31876	scaffold_10:4153838-4153958(-) (9)//scaffold_11:6432055-6432175(+) (10)//scaffold_11:9907998-9908124(+) (11)//scaffold_11:10041260-10041386(+) (11)//scaffold_12:6217663-6217783(+) (9)//scaffold_13:9669081-9669207(-) (11)//scaffold_14:14875455-14875575(-) (10)//scaffold_16:9677631-9677757(+) (11)//scaffold_16:13026901-13027021(+) (10)//scaffold_19:5662951-5663077(-) (11)//scaffold_19:7209696-7209822(+) (11)//scaffold_2:14031282-14031408(+) (11)//scaffold_2:20092879-20093005(-) (11)//scaffold_2:23507222-23507348(+) (11)//scaffold_20:80481-80607(+) (11)//scaffold_3:2441352-2441478(-) (11)//scaffold_4:11978506-11978632(-) (11)//scaffold_5:25727543-25727669(-) (11)//scaffold_694:7556-7682(+) (11)//scaffold_8:18373744-18373870(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216841.1.S1_at	E	E	pmrna31881	pmrna31881	NA	NA	P64177	Macrolide-specific efflux protein macA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216846.1.S1_at	E	E	pmrna31886	pmrna31886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216852.1.S1_at	E	E	pmrna31892	pmrna31892	NA	NA	Q8XAX1	Protein ydeP	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216860.1.S1_s_at	E	E	pmrna31902	pmrna31902	scaffold_6:13997884-13998323(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g31240.1	"retrotransposon protein, putative, unclassified"	Medtr3g162430.1	"RNA-directed DNA polymerase (Reverse transcriptase); Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.216863.1.S1_at	E	E	pmrna31905	pmrna31905	scaffold_11:16387657-16387955(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216864.1.S1_at	E	E	pmrna31906	pmrna31906	scaffold_11:16386947-16387095(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216871.1.S1_at	E	E	pmrna31916	pmrna31916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216878.1.S1_at	E	E	pmrna31923	pmrna31923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216879.1.S1_at	E	E	pmrna31924	pmrna31924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216888.1.S1_at	E	E	pmrna31934	pmrna31934	NA	NA	A1TQ84	Disulfide bond formation protein B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216889.1.S1_at	E	E	pmrna31935	pmrna31935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216894.1.S1_s_at	E	E	pmrna31941	pmrna31941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216895.1.S1_s_at	E	E	pmrna31946	pmrna31946	scaffold_1:43279532-43279569(-) (11)//scaffold_1:46105887-46105924(-) (11)//scaffold_10:2332381-2332418(-) (11)//scaffold_11:3913123-3913160(-) (11)//scaffold_12:12531929-12531966(-) (11)//scaffold_14:13583563-13583600(-) (11)//scaffold_18:81069-81106(+) (11)//scaffold_271:22395-22432(-) (11)//scaffold_3:4379988-4380025(-) (11)//scaffold_3:12597057-12597094(-) (11)//scaffold_3:19900960-19900997(+) (11)//scaffold_31:237167-237204(-) (11)//scaffold_4:22702765-22702802(-) (11)//scaffold_4:22789261-22789298(-) (11)//scaffold_6:8418271-8418308(-) (11)//scaffold_6:21607746-21607783(-) (11)//scaffold_648:11518-11555(-) (11)//scaffold_8:254448-254485(+) (11)//scaffold_90:42058-42095(+) (11)	NA	NA	NA	NA	NA	LOC_Os11g44150.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr6g077370.1	"Zinc finger, CCHC-type; Retrotransposon gag protein "	NA	NA	NA
PtpAffx.216895.1.S1_x_at	E	E	pmrna31946	pmrna31946	scaffold_3:19900955-19901378(+) (11)	NA	NA	NA	NA	NA	LOC_Os11g44150.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr6g077370.1	"Zinc finger, CCHC-type; Retrotransposon gag protein "	NA	NA	NA
PtpAffx.216922.1.S1_s_at	E	E	pmrna31996	pmrna31996	scaffold_11:6328538-6328879(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.216925.1.S1_at	E	E	pmrna32000	pmrna32000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216931.1.S1_at	E	E	pmrna32007	pmrna32007	scaffold_233:28260-28761(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216935.1.S1_at	E	E	pmrna32011	pmrna32011	NA	NA	Q9Z0R6	Intersectin-2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216937.1.S1_at	E	E	pmrna32014	pmrna32014	NA	NA	Q8D4U6	Uncharacterized response regulatory protein VV2_1193	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216940.1.S1_s_at	E	E	pmrna32017	pmrna32017	NA	NA	Q7Y618	Uncharacterized 8.8 kDa protein in rps12-tRNA-Val intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216946.1.S1_at	E	E	pmrna32024	pmrna32024	scaffold_7:8026761-8026862(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216953.1.S1_x_at	E	E	pmrna32032	pmrna32032	scaffold_7:8197287-8197576(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216962.1.S1_s_at	E	E	pmrna32044	pmrna32044	NA	NA	P25010	G2/mitotic-specific cyclin C13-1 (Fragment)	AT5G43080.1	Cyclin A3;1 	LOC_Os01g13229.1	"cyclin-A1, putative"	Medtr1g023700.1	Cyclin-like; ; 	NA	NA	NA
PtpAffx.216966.1.S1_at	E	E	pmrna32049	pmrna32049	NA	NA	Q1AXG5	Ribose import ATP-binding protein RbsA 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216969.1.S1_s_at	E	E	pmrna32052	pmrna32052	NA	NA	A4GYX4	Putative membrane protein ycf1	ATCG00280.1	photosystem II reaction center protein C 	LOC_Os10g21212.1	"photosystem II 44 kDa reaction center protein, putative"	NA	NA	NA	NA	NA
PtpAffx.216969.1.S1_x_at	E	E	pmrna32052	pmrna32052	NA	NA	A4GYX4	Putative membrane protein ycf1	ATCG00280.1	photosystem II reaction center protein C 	LOC_Os10g21212.1	"photosystem II 44 kDa reaction center protein, putative"	NA	NA	NA	NA	NA
PtpAffx.21697.1.S1_at	E	E	BU825828	BU825828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216980.1.S1_at	E	E	pmrna32071	pmrna32071	scaffold_6:14181630-14182057(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216991.1.S1_at	E	E	pmrna32089	pmrna32089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216991.1.S1_x_at	E	E	pmrna32089	pmrna32089	scaffold_6:14461896-14461964(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216993.1.S1_at	E	E	pmrna32091	pmrna32091	scaffold_9:12175641-12185253(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217007.1.S1_at	E	E	pmrna32106	pmrna32106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217014.1.S1_at	E	E	pmrna32113	pmrna32113	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217020.1.S1_at	E	E	pmrna32123	pmrna32123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217021.1.S1_at	E	E	pmrna32124	pmrna32124	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217026.1.S1_at	E	E	pmrna32131	pmrna32131	scaffold_1:13607498-13608059(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217070.1.S1_at	E	E	pmrna32205	pmrna32205	scaffold_26:314372-314719(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217072.1.S1_at	E	E	pmrna32208	pmrna32208	scaffold_26:237372-237450(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217076.1.S1_at	E	E	pmrna32212	pmrna32212	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr3g043730.1	"Protein ycf2, putative "	NA	NA	NA
PtpAffx.217076.1.S1_x_at	E	E	pmrna32212	pmrna32212	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr3g043730.1	"Protein ycf2, putative "	NA	NA	NA
PtpAffx.217082.1.S1_at	E	E	pmrna32219	pmrna32219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217084.1.S1_at	E	E	pmrna32223	pmrna32223	NA	NA	B1Y854	Cobalamin synthase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217085.1.S1_at	E	E	pmrna32224	pmrna32224	scaffold_3026:433-738(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217087.1.S1_at	E	E	pmrna32226	pmrna32226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217105.1.S1_at	E	E	pmrna32246	pmrna32246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217111.1.S1_s_at	E	E	pmrna32253	pmrna32253	NA	NA	A4GYR1	Photosystem I assembly protein ycf3	ATCG00360.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g38216.1	"photosystem I assembly protein ycf3, putative"	Medtr3g043600.1	"Photosystem I assembly protein ycf3, putative "	NA	NA	NA
PtpAffx.217113.1.S1_at	E	E	pmrna32255	pmrna32255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217116.1.S1_at	E	E	pmrna32258	pmrna32258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217116.1.S1_x_at	E	E	pmrna32258	pmrna32258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217127.1.S1_at	E	E	pmrna32271	pmrna32271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217127.1.S1_x_at	E	E	pmrna32271	pmrna32271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217130.1.S1_at	E	E	pmrna32274	pmrna32274	NA	NA	Q1LLA9	ATP-dependent zinc metalloprotease FtsH	AT5G42270.1	FtsH extracellular protease family 	LOC_Os06g51029.2	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	NA	NA	NA
PtpAffx.217138.1.S1_at	E	E	pmrna32284	pmrna32284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217145.1.S1_at	E	E	pmrna32292	pmrna32292	scaffold_98:33438-34011(+) (11)	NA	NA	NA	AT3G21000.1	Gag-Pol-related retrotransposon family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.217147.1.S1_at	E	E	pmrna32294	pmrna32294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217149.1.S1_at	E	E	pmrna32297	pmrna32297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217154.1.S1_at	E	E	pmrna32305	pmrna32305	scaffold_1:27829191-27829660(+) (10)//scaffold_11:9049390-9049859(-) (10)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os01g06680.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	NA	NA	NA
PtpAffx.217163.1.S1_at	E	E	pmrna32315	pmrna32315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217168.1.S1_at	E	E	pmrna32320	pmrna32320	scaffold_6:15016538-15017001(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g29450.1	"retrotransposon protein, putative, LINE subclass"	NA	NA	NA	NA	NA
PtpAffx.217169.1.S1_at	E	E	pmrna32321	pmrna32321	scaffold_6:15017051-15017419(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217172.1.S1_at	E	E	pmrna32325	pmrna32325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217175.1.S1_a_at	E	E	pmrna32329	pmrna32329	scaffold_1413:684-731(-) (10)//scaffold_1413:827-1018(-) (10)//scaffold_1413:971-5209(-) (10)//scaffold_1413:5162-6356(-) (10)//scaffold_1413:5305-7075(-) (10)//scaffold_1413:5592-8045(-) (10)//scaffold_1413:6309-8762(-) (10)//scaffold_1413:7028-9336(-) (10)//scaffold_1413:7171-9622(-) (10)//scaffold_1413:7567-10196(-) (10)//scaffold_1926:147-194(+) (10)//scaffold_1926:296-3335(+) (10)//scaffold_1926:3316-4338(+) (10)//scaffold_1926:4040-4770(+) (10)//scaffold_1926:4327-5201(+) (10)//scaffold_1926:4759-6077(+) (10)//scaffold_2798:35-773(+) (10)//scaffold_2798:754-916(+) (10)//scaffold_2812:93-5602(-) (10)//scaffold_3:3995060-3995107(-) (10)//scaffold_3:3995348-3996106(-) (10)//scaffold_3:3996067-3997624(-) (10)//scaffold_3:3997585-3997632(-) (9)//scaffold_3:4029760-4033251(-) (10)//scaffold_3:4030047-4033246(-) (9)//scaffold_6:15441634-15455618(-) (10)//scaffold_6:15447230-15456912(-) (10)//scaffold_6:15449970-15459363(-) (10)//scaffold_6:15452565-15464099(-) (10)//scaffold_6:15453426-15464387(-) (10)//scaffold_6:15455577-15464531(-) (10)//scaffold_6:15456871-15465392(-) (10)//scaffold_6:15459316-15465972(-) (10)//scaffold_6:15464346-15466547(-) (10)//scaffold_6:15464493-15467411(-) (10)//scaffold_6:15465354-15468271(-) (10)//scaffold_6:15465934-15468988(-) (10)//scaffold_6:15466509-15469848(-) (10)//scaffold_6:15467373-15470136(-) (10)//scaffold_6:15467947-15470280(-) (10)//scaffold_6:15468091-15470997(-) (10)//scaffold_6:15468235-15471428(-) (10)//scaffold_6:15468523-15471716(-) (10)//scaffold_6:15468952-15471860(-) (10)//scaffold_6:15469812-15472432(-) (10)//scaffold_6:15470100-15472576(-) (10)//scaffold_6:15470244-15473008(-) (10)//scaffold_6:15470961-15474015(-) (10)//scaffold_6:15471105-15474734(-) (10)//scaffold_6:15471392-15476454(-) (10)//scaffold_6:15471680-15477163(-) (10)//scaffold_6:15471824-15477737(-) (10)//scaffold_6:15472396-15478025(-) (10)//scaffold_6:15472540-15478027(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217177.1.S1_at	E	E	pmrna32333	pmrna32333	NA	NA	P24211	Putative protein rhsE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217181.1.S1_at	E	E	pmrna32337	pmrna32337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217187.1.S1_at	E	E	pmrna32344	pmrna32344	NA	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.217189.1.S1_at	E	E	pmrna32347	pmrna32347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217190.1.S1_at	E	E	pmrna32348	pmrna32348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217228.1.S1_at	E	E	pmrna32410	pmrna32410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217230.1.S1_at	E	E	pmrna32414	pmrna32414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217297.1.S1_at	E	E	pmrna32499	pmrna32499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217298.1.S1_at	E	E	pmrna32500	pmrna32500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217309.1.S1_at	E	E	pmrna32512	pmrna32512	scaffold_4:9906886-9907485(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217328.1.S1_at	E	E	pmrna32543	pmrna32543	NA	NA	P37469	Replicative DNA helicase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217331.1.S1_at	E	E	pmrna32547	pmrna32547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217336.1.S1_at	E	E	pmrna32554	pmrna32554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217342.1.S1_s_at	E	E	pmrna32560	pmrna32560	scaffold_17:4373775-4374197(-) (11)	NA	Q7TD09	Capsid protein	NA	NA	NA	NA	Medtr6g094120.1	"Zinc finger, CCHC-type "	NA	NA	NA
PtpAffx.21735.1.A1_at	E	E	BU871936	BU871936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217350.1.S1_at	E	E	pmrna32572	pmrna32572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217372.1.S1_at	E	E	pmrna32603	pmrna32603	scaffold_4:190770-191151(+) (11)//scaffold_507:9835-10216(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217373.1.S1_at	E	E	pmrna32604	pmrna32604	scaffold_4:183002-183165(+) (11)//scaffold_507:14139-14302(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217392.1.S1_at	E	E	pmrna32639	pmrna32639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217395.1.S1_at	E	E	pmrna32642	pmrna32642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217404.1.S1_at	E	E	pmrna32654	pmrna32654	scaffold_12:3558227-3558444(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217408.1.S1_s_at	E	E	pmrna32658	pmrna32658	scaffold_1:10098638-10099121(-) (11)//scaffold_2393:2254-2799(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	NA	NA	NA
PtpAffx.217417.1.S1_s_at	E	E	pmrna32669	pmrna32669	scaffold_4:12226793-12226995(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g22420.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.217421.1.S1_at	E	E	pmrna32674	pmrna32674	scaffold_4:12434182-12434372(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217422.1.S1_at	E	E	pmrna32675	pmrna32675	scaffold_23:515567-516220(+) (11)//scaffold_4:12451197-12451850(-) (11)	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.217433.1.S1_s_at	E	E	pmrna32687	pmrna32687	scaffold_1:28761584-28761758(-) (11)//scaffold_857:879-1053(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217440.1.S1_at	E	E	pmrna32696	pmrna32696	NA	NA	P43458	Uncharacterized HTH-type transcriptional regulator in mcrB 3'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217448.1.S1_at	E	E	pmrna32708	pmrna32708	scaffold_11:13156144-13156307(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217449.1.S1_at	E	E	pmrna32709	pmrna32709	NA	NA	Q9C9H7	Receptor-like protein 12	AT1G47890.1	receptor like protein 7 	LOC_Os01g06670.1	"hcr2-5D, putative, expressed"	Medtr5g087430.1	"Leucine-rich repeat, N-terminal "	NA	NA	NA
PtpAffx.217455.1.S1_at	E	E	pmrna32720	pmrna32720	scaffold_461:4732-6713(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217468.1.S1_at	E	E	pmrna32744	pmrna32744	scaffold_11:7060638-7061130(+) (9)	NA	NA	NA	NA	NA	LOC_Os01g02540.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.217475.1.S1_at	E	E	pmrna32755	pmrna32755	NA	NA	Q987N5	Putative 2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217477.1.S1_at	E	E	pmrna32760	pmrna32760	NA	NA	NA	NA	AT1G56500.1	haloacid dehalogenase-like hydrolase family protein 	LOC_Os01g55310.1	"haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217478.1.S1_at	E	E	pmrna32761	pmrna32761	scaffold_320:17284-17677(+) (9)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr3g058900.1	"Zinc finger, CCHC-type "	NA	NA	NA
PtpAffx.217479.1.S1_at	E	E	pmrna32762	pmrna32762	NA	NA	P10478	"Endo-1,4-beta-xylanase Z"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217482.1.S1_at	E	E	pmrna32767	pmrna32767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217510.1.S1_at	E	E	pmrna32802	pmrna32802	scaffold_8:15966619-15967188(-) (10)	NA	NA	NA	NA	NA	LOC_Os05g12290.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.217519.1.S1_at	E	E	pmrna32813	pmrna32813	scaffold_11:16366260-16366568(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217523.1.S1_at	E	E	pmrna32818	pmrna32818	NA	NA	P54700	Flagellar biosynthetic protein fliP	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217524.1.S1_s_at	E	E	pmrna32819	pmrna32819	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr5g010890.1	AAA ATPase; Chloroplast Ycf2 	NA	NA	NA
PtpAffx.217556.1.S1_s_at	E	E	pmrna32870	pmrna32870	scaffold_17:2891601-2892350(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217563.1.S1_at	E	E	pmrna32878	pmrna32878	scaffold_889:1553-1956(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217565.1.S1_at	E	E	pmrna32881	pmrna32881	NA	NA	P54915	Conjugal transfer protein trbG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217572.1.S1_at	E	E	pmrna32893	pmrna32893	scaffold_1:11341928-11342145(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217575.1.S1_at	E	E	pmrna32898	pmrna32898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217580.1.S1_at	E	E	pmrna32907	pmrna32907	scaffold_6:17306150-17307302(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g010300.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.217595.1.S1_s_at	E	E	pmrna32927	pmrna32927	scaffold_1:42930780-42931130(+) (11)//scaffold_157:19998-20348(+) (11)//scaffold_19:1135794-1136144(+) (11)//scaffold_3:19882260-19884453(+) (11)//scaffold_535:8322-8672(-) (11)	NA	NA	NA	AT3G21000.1	Gag-Pol-related retrotransposon family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.217595.1.S1_x_at	E	E	pmrna32927	pmrna32927	scaffold_157:19945-20371(+) (11)	NA	NA	NA	AT3G21000.1	Gag-Pol-related retrotransposon family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.217599.1.S1_at	E	E	pmrna32933	pmrna32933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217604.1.S1_at	E	E	pmrna32940	pmrna32940	NA	NA	P0ADE6	Uncharacterized protein ygaU	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217605.1.S1_at	E	E	pmrna32941	pmrna32941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217614.1.S1_at	E	E	pmrna32953	pmrna32953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217627.1.S1_s_at	E	E	pmrna32970	pmrna32970	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr4g062150.1	Chloroplast Ycf2 	NA	NA	NA
PtpAffx.217628.1.S1_at	E	E	pmrna32973	pmrna32973	NA	NA	P37270	Phytoene synthase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217645.1.S1_s_at	E	E	pmrna32995	pmrna32995	NA	NA	P93286	Putative cytochrome c biogenesis ccmF-like mitochondrial protein	ATMG00180.1	cytochrome C biogenesis 452 	NA	NA	Medtr1g005350.1	"Cytochrome c biogenesis ccmF-like mitochondrial protein, putative "	NA	NA	NA
PtpAffx.217651.1.S1_at	E	E	pmrna33002	pmrna33002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217659.1.S1_at	E	E	pmrna33013	pmrna33013	NA	NA	P37486	Uncharacterized HTH-type transcriptional regulator yybR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217660.1.S1_at	E	E	pmrna33014	pmrna33014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217661.1.S1_s_at	E	E	pmrna33015	pmrna33015	scaffold_1670:2586-2852(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217664.1.S1_at	E	E	pmrna33018	pmrna33018	NA	NA	NA	NA	AT2G31340.1	embryo defective 1381 	LOC_Os09g12500.2	"EMB1381, putative, expressed"	Medtr3g109700.1	"EMB1381, putative "	NA	NA	NA
PtpAffx.21767.2.S1_at	E	E	CV271173	CV271173	NA	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.5	ubiquitin-conjugating enzyme 28 	LOC_Os04g57220.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.217671.1.S1_at	E	E	pmrna33028	pmrna33028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217681.1.S1_x_at	E	E	pmrna33041	pmrna33041	scaffold_12:6943061-6943410(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217682.1.S1_at	E	E	pmrna33042	pmrna33042	scaffold_12:6943546-6944103(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217689.1.S1_at	E	E	pmrna33051	pmrna33051	NA	NA	P63531	Putative glucanase glgE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217691.1.S1_at	E	E	pmrna33054	pmrna33054	NA	NA	A6SUQ8	Valyl-tRNA synthetase	AT5G16715.1	ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os07g06940.1	"valyl-tRNA synthetase, putative, expressed"	Medtr1g129510.1	"Isoleucyl-tRNA synthetase, class Ia; "	NA	NA	NA
PtpAffx.217703.1.S1_at	E	E	pmrna33067	pmrna33067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217707.1.S1_at	E	E	pmrna33072	pmrna33072	NA	NA	P25256	Tylosin resistance ATP-binding protein tlrC	AT5G09930.1	ABC transporter family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217709.1.S1_at	E	E	pmrna33074	pmrna33074	scaffold_14:12431065-12431208(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217717.1.S1_at	E	E	pmrna33083	pmrna33083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217737.1.S1_at	E	E	pmrna33119	pmrna33119	scaffold_419:8102-9329(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217738.1.S1_at	E	E	pmrna33120	pmrna33120	scaffold_419:4533-4841(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217751.1.S1_at	E	E	pmrna33139	pmrna33139	NA	NA	NA	NA	AT2G33580.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g018990.1	"Peptidoglycan-binding LysM; Tyrosine protein kinase, active site "	NA	NA	NA
PtpAffx.217765.1.S1_at	E	E	pmrna33159	pmrna33159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217780.1.S1_at	E	E	pmrna33177	pmrna33177	scaffold_10:5384735-5385382(-) (9)	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g09760.1	"retrotransposon protein, putative, unclassified"	Medtr7g123950.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.217784.1.S1_at	E	E	pmrna33187	pmrna33187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217797.1.S1_at	E	E	pmrna33203	pmrna33203	NA	NA	Q7XBQ9	Disease resistance protein RGA2	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os03g36920.1	"disease resistance protein, putative, expressed"	Medtr3g005680.1	NB-ARC 	NA	NA	NA
PtpAffx.217799.1.S1_x_at	E	E	pmrna33205	pmrna33205	scaffold_14:421485-422332(+) (9)	NA	Q9LVT1	Putative disease resistance protein At5g47280	AT5G47280.1	ADR1-like 3 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr5g028610.1	NB-ARC 	NA	NA	NA
PtpAffx.217820.1.S1_at	E	E	pmrna33234	pmrna33234	NA	NA	Q9WZ31	Magnesium transport protein CorA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217833.1.S1_at	E	E	pmrna33255	pmrna33255	scaffold_7:8418040-8418115(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217838.1.S1_at	E	E	pmrna33261	pmrna33261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217846.1.S1_s_at	E	E	pmrna33269	pmrna33269	NA	NA	Q04716	"Ribosomal protein S3, mitochondrial"	ATMG00090.1	structural constituent of ribosome;protein binding 	LOC_Os12g34124.1	"mitochondrial ribosomal protein S3, putative"	NA	NA	NA	NA	NA
PtpAffx.217850.1.S1_at	E	E	pmrna33274	pmrna33274	NA	NA	P56902	3-oxoacyl-[acyl-carrier-protein] synthase 2	AT2G04540.1	Beta-ketoacyl synthase 	LOC_Os02g10320.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	NA	NA	NA
PtpAffx.217855.1.S1_at	E	E	pmrna33280	pmrna33280	NA	NA	NA	NA	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr3g111220.1	Plant protein of unknown function 	NA	NA	NA
PtpAffx.217855.1.S1_x_at	E	E	pmrna33280	pmrna33280	NA	NA	NA	NA	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr3g111220.1	Plant protein of unknown function 	NA	NA	NA
PtpAffx.217881.1.S1_at	E	E	pmrna33325	pmrna33325	scaffold_2:18964732-18964888(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217896.1.S1_x_at	E	E	pmrna33344	pmrna33344	scaffold_4:5543234-5543458(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217900.1.S1_at	E	E	pmrna33349	pmrna33349	NA	NA	O25424	Probable L-asparaginase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217902.1.S1_at	E	E	pmrna33352	pmrna33352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217916.1.S1_at	E	E	pmrna33370	pmrna33370	NA	NA	O81242	DNA-binding protein RHL1	AT1G48380.2	root hair initiation protein root hairless 1 (RHL1) 	LOC_Os07g07580.3	"ROOT HAIRLESS 1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217921.1.S1_at	E	E	pmrna33379	pmrna33379	scaffold_17:542219-542390(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217938.1.S1_at	E	E	pmrna33408	pmrna33408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217947.1.S1_at	E	E	pmrna33418	pmrna33418	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217957.1.S1_at	E	E	pmrna33433	pmrna33433	scaffold_19:2473717-2474222(+) (11)	NA	NA	NA	AT1G34070.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	Medtr7g123950.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.217959.1.S1_at	E	E	pmrna33443	pmrna33443	NA	NA	Q9KTJ6	Probable D-methionine transport system permease protein metI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217960.1.S1_at	E	E	pmrna33444	pmrna33444	NA	NA	Q8ZH40	D-methionine-binding lipoprotein metQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217975.1.S1_at	E	E	pmrna33463	pmrna33463	NA	NA	Q9X5V3	Copper-transporting P-type ATPase	AT5G44790.1	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) 	LOC_Os02g07630.1	"copper-transporting ATPase, putative, expressed"	Medtr5g010530.1	"ATPase, E1-E2 type "	NA	NA	NA
PtpAffx.218006.1.S1_at	E	E	pmrna33502	pmrna33502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218022.1.S1_x_at	E	E	pmrna33525	pmrna33525	scaffold_11:5957626-5957944(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218035.1.S1_at	E	E	pmrna33546	pmrna33546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218046.1.S1_at	E	E	pmrna33562	pmrna33562	scaffold_11:9384381-9386657(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr7g116840.1	Pre-SET; Histone H3-K9 methyltransferase 	NA	NA	NA
PtpAffx.218048.1.S1_at	E	E	pmrna33565	pmrna33565	scaffold_11:9455652-9456256(+) (10)	NA	NA	NA	NA	NA	LOC_Os10g42880.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.218056.1.S1_at	E	E	pmrna33575	pmrna33575	NA	NA	Q9X6U2	D-beta-hydroxybutyrate dehydrogenase	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os12g13930.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.218067.1.S1_at	E	E	pmrna33588	pmrna33588	scaffold_17:12977575-12978010(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g39540.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.218074.1.S1_at	E	E	pmrna33595	pmrna33595	NA	NA	P94421	Uncharacterized ABC transporter solute-binding protein yclQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218077.1.S1_at	E	E	pmrna33598	pmrna33598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218078.1.S1_at	E	E	pmrna33599	pmrna33599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218079.1.S1_at	E	E	pmrna33600	pmrna33600	NA	NA	O22714	Pentatricopeptide repeat-containing protein At1g60770	AT1G60770.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g35760.2	"pentatricopeptide, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.21808.1.S1_at	E	E	AJ777178	AJ777178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218082.1.S1_x_at	E	E	pmrna33605	pmrna33605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218083.1.S1_a_at	E	E	pmrna33606	pmrna33606	scaffold_15:2400163-2407276(-) (9)//scaffold_15:2400629-2411548(-) (9)//scaffold_15:2401095-2411908(-) (9)//scaffold_2501:128-2663(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218090.1.S1_at	E	E	pmrna33613	pmrna33613	NA	NA	NA	NA	AT1G58190.2	receptor like protein 9 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr1g068080.1	hypothetical protein 	NA	NA	NA
PtpAffx.218092.1.S1_at	E	E	pmrna33615	pmrna33615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218094.1.S1_at	E	E	pmrna33617	pmrna33617	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218102.1.S1_at	E	E	pmrna33625	pmrna33625	NA	NA	Q21V41	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218108.1.S1_at	E	E	pmrna33635	pmrna33635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218112.1.S1_s_at	E	E	pmrna33639	pmrna33639	NA	NA	A4GYS3	Chloroplast envelope membrane protein	ATCG00530.1	CemA-like proton extrusion protein-related 	LOC_Os02g24598.1	"chloroplast envelope membrane protein, putative"	Medtr5g019440.1	CemA 	NA	NA	NA
PtpAffx.218118.1.S1_at	E	E	pmrna33646	pmrna33646	NA	NA	NA	NA	AT5G42950.1	GYF domain-containing protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218119.1.S1_at	E	E	pmrna33647	pmrna33647	NA	NA	P0A0W2	FK506-binding protein	AT3G25230.2	rotamase FKBP 1 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	NA	NA	NA
PtpAffx.218123.1.S1_at	E	E	pmrna33652	pmrna33652	NA	NA	O07635	Uncharacterized protein ylaK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218125.1.S1_a_at	E	E	pmrna33654	pmrna33654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218130.1.S1_at	E	E	pmrna33659	pmrna33659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218131.1.S1_at	E	E	pmrna33660	pmrna33660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218132.1.S1_x_at	E	E	pmrna33661	pmrna33661	scaffold_15:2377892-2384685(+) (9)//scaffold_15:2379059-2387356(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218138.1.S1_at	E	E	pmrna33668	pmrna33668	NA	NA	P16323	Flagellar basal-body rod protein flgF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218142.1.S1_at	E	E	pmrna33673	pmrna33673	NA	NA	P44933	Glutathione-regulated potassium-efflux system protein	AT4G04850.2	K+ efflux antiporter 3 	LOC_Os12g42300.1	"potasium efflux antiporter protein, putative, expressed"	Medtr7g084460.1	TrkA-N; Sodium/hydrogen exchanger 	NA	NA	NA
PtpAffx.218177.1.S1_at	E	E	pmrna33719	pmrna33719	scaffold_18:3480278-3480405(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218182.1.S1_at	E	E	pmrna33729	pmrna33729	NA	NA	Q56886	Flagellar biosynthetic protein flhB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218183.1.S1_at	E	E	pmrna33730	pmrna33730	scaffold_9:3986479-3986747(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218185.1.S1_at	E	E	pmrna33732	pmrna33732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218189.1.S1_at	E	E	pmrna33736	pmrna33736	NA	NA	Q9XBQ8	"L-lysine 2,3-aminomutase"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21819.1.S1_at	E	E	CV245242	CV245242	NA	NA	NA	NA	AT3G07568.1	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g125830.1	hypothetical protein 	NA	NA	NA
PtpAffx.218227.1.S1_at	E	E	pmrna33777	pmrna33777	scaffold_19:7031664-7031746(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218227.1.S1_s_at	E	E	pmrna33777	pmrna33777	scaffold_19:7031612-7031994(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218230.1.S1_at	E	E	pmrna33780	pmrna33780	NA	NA	NA	NA	AT3G61870.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). "	LOC_Os02g03010.1	expressed protein	Medtr7g145810.1	hypothetical protein 	NA	NA	NA
PtpAffx.218235.1.S1_at	E	E	pmrna33786	pmrna33786	NA	NA	P38054	Cation efflux system protein CusA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218241.1.S1_at	E	E	pmrna33793	pmrna33793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218260.1.S1_at	E	E	pmrna33812	pmrna33812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218278.1.S1_at	E	E	pmrna33831	pmrna33831	NA	NA	P0CD27	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043710.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.218307.1.S1_at	E	E	pmrna33876	pmrna33876	NA	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G46620.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os03g22830.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g100800.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.21832.1.S1_at	E	E	CN550232	CN550232	scaffold_1:5437653-5437783(+) (11)	NA	Q9LHG9	Nascent polypeptide-associated complex subunit alpha-like protein 1	AT3G12390.1	"Nascent polypeptide-associated complex (NAC), alpha subunit family protein "	LOC_Os01g71230.2	"nascent polypeptide-associated complex subunit alpha-like protein 3, putative, expressed"	Medtr7g105560.1	Ubiquitin-associated; Nascent polypeptide-associated complex NAC 	NA	NA	NA
PtpAffx.218324.1.S1_at	E	E	pmrna33895	pmrna33895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218330.1.S1_at	E	E	pmrna33902	pmrna33902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218336.1.S1_at	E	E	pmrna33908	pmrna33908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218337.1.S1_at	E	E	pmrna33911	pmrna33911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218338.1.S1_at	E	E	pmrna33912	pmrna33912	NA	NA	Q58452	UPF0045 protein MJ1052	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218340.1.S1_at	E	E	pmrna33915	pmrna33915	scaffold_1:19658344-19658541(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218348.1.S1_at	E	E	pmrna33924	pmrna33924	NA	NA	Q44018	UPF0065 protein in gbd 5'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218380.1.S1_at	E	E	pmrna33975	pmrna33975	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g130170.1	"Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.218380.1.S1_s_at	E	E	pmrna33975	pmrna33975	scaffold_19:1206199-1206765(+) (11)//scaffold_2177:2846-3412(-) (10)//scaffold_3:1787631-1788200(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g130170.1	"Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.218382.1.S1_at	E	E	pmrna33977	pmrna33977	NA	NA	P34750	Fimbrial assembly protein pilQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218385.1.S1_at	E	E	pmrna33980	pmrna33980	scaffold_2:22822589-22822856(-) (11)//scaffold_2:22827276-22827543(+) (11)	NA	P03554	Enzymatic polyprotein	NA	NA	LOC_Os12g42720.1	"retrotransposon protein, putative, unclassified"	Medtr5g062290.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.218386.1.S1_s_at	E	E	pmrna33981	pmrna33981	scaffold_2:22735101-22735396(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218394.1.S1_x_at	E	E	pmrna33989	pmrna33989	scaffold_50:136168-145010(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218402.1.S1_at	E	E	pmrna34002	pmrna34002	scaffold_19:2131157-2131307(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218423.1.S1_at	E	E	pmrna34030	pmrna34030	NA	NA	Q5E9V5	Kelch domain-containing protein 8B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218425.1.S1_at	E	E	pmrna34032	pmrna34032	scaffold_13:14295967-14296209(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218428.1.S1_at	E	E	pmrna34038	pmrna34038	NA	NA	Q4ZSY3	Blue-light-activated protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218429.1.S1_at	E	E	pmrna34039	pmrna34039	NA	NA	P33951	ATP-binding protein syrD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218430.1.S1_at	E	E	pmrna34040	pmrna34040	NA	NA	Q47317	Aerobactin siderophore biosynthesis protein iucB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218461.1.S1_at	E	E	pmrna34084	pmrna34084	NA	NA	NA	NA	AT3G50140.1	Plant protein of unknown function (DUF247) 	LOC_Os08g02820.1	plant protein of unknown function domain containing protein	Medtr5g093520.1	Plant protein of unknown function 	NA	NA	NA
PtpAffx.218489.1.S1_at	E	E	pmrna34120	pmrna34120	scaffold_1:32683799-32684177(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218496.1.S1_at	E	E	pmrna34141	pmrna34141	scaffold_5:1510176-1510775(-) (9)	NA	NA	NA	NA	NA	LOC_Os10g21350.1	"retrotransposon protein, putative, unclassified"	Medtr6g077370.1	"Zinc finger, CCHC-type; Retrotransposon gag protein "	NA	NA	NA
PtpAffx.218496.1.S1_x_at	E	E	pmrna34141	pmrna34141	scaffold_5:1510176-1510775(-) (9)	NA	NA	NA	NA	NA	LOC_Os10g21350.1	"retrotransposon protein, putative, unclassified"	Medtr6g077370.1	"Zinc finger, CCHC-type; Retrotransposon gag protein "	NA	NA	NA
PtpAffx.218503.1.S1_s_at	E	E	pmrna34151	pmrna34151	NA	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	NA	NA	NA
PtpAffx.218504.1.S1_at	E	E	pmrna34152	pmrna34152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218513.1.S1_at	E	E	pmrna34162	pmrna34162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218517.1.S1_at	E	E	pmrna34169	pmrna34169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218521.1.S1_at	E	E	pmrna34173	pmrna34173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218550.1.S1_at	E	E	pmrna34210	pmrna34210	NA	NA	NA	NA	AT5G23760.1	Copper transport protein family 	LOC_Os03g02070.2	"heavy-metal-associated domain-containing protein, putative, expressed"	AC235674_17.1	"heavy-metal-associated domain-containing protein, putative AC235674.1 87926-88304 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.218552.1.S1_at	E	E	pmrna34213	pmrna34213	scaffold_1:38964260-38964604(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.218552.1.S1_x_at	E	E	pmrna34213	pmrna34213	scaffold_1:38964260-38964604(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.218556.1.S1_at	E	E	pmrna34217	pmrna34217	NA	NA	Q97BF6	Potassium-transporting ATPase B chain	NA	NA	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	NA	NA	NA	NA	NA
PtpAffx.218557.1.S1_at	E	E	pmrna34218	pmrna34218	NA	NA	P24305	Outer membrane porin protein 32	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218559.1.S1_s_at	E	E	pmrna34221	pmrna34221	scaffold_5:10224338-10224705(+) (9)//scaffold_5:25789392-25789803(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218572.1.S1_at	E	E	pmrna34234	pmrna34234	scaffold_3:2381212-2381244(-) (9)	NA	NA	NA	AT2G25470.1	receptor like protein 21 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.218572.1.S1_x_at	E	E	pmrna34234	pmrna34234	scaffold_3:2381203-2381244(-) (11)	NA	NA	NA	AT2G25470.1	receptor like protein 21 	LOC_Os06g08154.1	"receptor-like protein kinase 5 precursor, putative, expressed"	AC233100_79.1	Leucine-rich repeat AC233100.6 350402-345286 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.218574.1.S1_at	E	E	pmrna34236	pmrna34236	NA	NA	B4UIG2	Thiazole synthase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218580.1.S1_at	E	E	pmrna34243	pmrna34243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218581.1.S1_at	E	E	pmrna34244	pmrna34244	NA	NA	P76632	Uncharacterized protein ygcK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218585.1.S1_at	E	E	pmrna34250	pmrna34250	NA	NA	P02941	Methyl-accepting chemotaxis protein II	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218587.1.S1_at	E	E	pmrna34254	pmrna34254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218588.1.S1_at	E	E	pmrna34255	pmrna34255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218589.1.S1_at	E	E	pmrna34256	pmrna34256	NA	NA	Q46871	Uncharacterized protein yqjH	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218594.1.S1_at	E	E	pmrna34262	pmrna34262	NA	NA	NA	NA	AT4G22840.1	Sodium Bile acid symporter family 	NA	NA	Medtr5g011580.1	Bile acid:sodium symporter 	NA	NA	NA
PtpAffx.218594.1.S1_x_at	E	E	pmrna34262	pmrna34262	NA	NA	NA	NA	AT4G22840.1	Sodium Bile acid symporter family 	NA	NA	Medtr5g011580.1	Bile acid:sodium symporter 	NA	NA	NA
PtpAffx.218596.1.S1_at	E	E	pmrna34264	pmrna34264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218597.1.S1_at	E	E	pmrna34265	pmrna34265	scaffold_1:32207419-32207554(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218598.1.S1_at	E	E	pmrna34266	pmrna34266	NA	NA	P55891	Motility protein A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218599.1.S1_at	E	E	pmrna34267	pmrna34267	NA	NA	Q87AJ9	Peptide methionine sulfoxide reductase msrB	AT4G21860.3	methionine sulfoxide reductase B 2 	LOC_Os06g27760.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr2g026010.1	Mss4-like 	NA	NA	NA
PtpAffx.218622.1.S1_at	E	E	pmrna34312	pmrna34312	NA	NA	P15650	"Long-chain specific acyl-CoA dehydrogenase, mitochondrial"	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.5	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	NA	NA	NA
PtpAffx.218638.1.S1_at	E	E	pmrna34332	pmrna34332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218642.1.S1_at	E	E	pmrna34336	pmrna34336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218642.1.S1_x_at	E	E	pmrna34336	pmrna34336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218649.1.S1_at	E	E	pmrna34343	pmrna34343	scaffold_17:4371541-4371634(-) (11)//scaffold_17:4379573-4379666(-) (11)	NA	P03554	Enzymatic polyprotein	NA	NA	NA	NA	Medtr5g062240.1	"Enzymatic polyprotein, related "	NA	NA	NA
PtpAffx.218654.1.S1_at	E	E	pmrna34349	pmrna34349	NA	NA	P03030	Transcriptional activator protein lysR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218661.1.S1_at	E	E	pmrna34358	pmrna34358	scaffold_8:16532136-16532289(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218666.1.S1_s_at	E	E	pmrna34368	pmrna34368	scaffold_82:71837-72363(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g25640.1	"retrotransposon protein, putative, unclassified"	AC233082_3.1	"RNA-directed DNA polymerase (Reverse transcriptase); Peptidase aspartic, active site; Retrotransposon gag protein AC233082.3 19216-16757 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.218672.1.S1_at	E	E	pmrna34376	pmrna34376	scaffold_8:16756401-16756885(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218678.1.S1_at	E	E	pmrna34385	pmrna34385	NA	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g13540.1	"retrotransposon protein, putative, unclassified"	Medtr4g080020.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.218678.1.S1_s_at	E	E	pmrna34385	pmrna34385	scaffold_21:294499-294771(+) (11)	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g13540.1	"retrotransposon protein, putative, unclassified"	Medtr4g080020.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.218681.1.S1_at	E	E	pmrna34388	pmrna34388	NA	NA	P0AEW4	Protein icc	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218692.1.S1_at	E	E	pmrna34402	pmrna34402	scaffold_6:15985709-15985959(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g159800.1	Protein phosphatase 2C; 	NA	NA	NA
PtpAffx.218703.1.S1_at	E	E	pmrna34421	pmrna34421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218704.1.S1_at	E	E	pmrna34422	pmrna34422	NA	NA	P52035	Glutathione peroxidase homolog BsaA	AT2G31570.1	glutathione peroxidase 2 	LOC_Os11g18170.1	"glutathione peroxidase, putative, expressed"	Medtr4g149540.5	Glutathione peroxidase 	NA	NA	NA
PtpAffx.218706.1.S1_at	E	E	pmrna34424	pmrna34424	NA	NA	P21439	Multidrug resistance protein 3	AT3G28860.1	ATP binding cassette subfamily B19 	LOC_Os03g08380.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g025810.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	NA	NA	NA
PtpAffx.218713.1.S1_at	E	E	pmrna34435	pmrna34435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218716.1.S1_at	E	E	pmrna34438	pmrna34438	scaffold_43:115150-115574(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218718.1.S1_at	E	E	pmrna34440	pmrna34440	scaffold_35:81685-81795(-) (9)	NA	Q5VR89	Aquaporin SIP1-1	AT3G04090.1	small and basic intrinsic protein 1A 	LOC_Os01g08660.1	"aquaporin protein, putative, expressed"	Medtr7g099920.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.218722.1.S1_at	E	E	pmrna34444	pmrna34444	scaffold_43:5223-5392(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218727.1.S1_at	E	E	pmrna34449	pmrna34449	scaffold_17:14637963-14638293(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218736.1.S1_at	E	E	pmrna34459	pmrna34459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218742.1.S1_at	E	E	pmrna34465	pmrna34465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218752.1.S1_s_at	E	E	pmrna34475	pmrna34475	NA	NA	Q0ZJ24	Photosystem II CP43 chlorophyll apoprotein	ATCG00280.1	photosystem II reaction center protein C 	LOC_Os02g24632.1	"photosystem II 44 kDa reaction center protein, putative, expressed"	Medtr8g015970.1	Photosynthetic reaction centre protein; Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.218755.1.S1_at	E	E	pmrna34481	pmrna34481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218756.1.S1_at	E	E	pmrna34482	pmrna34482	NA	NA	P0ABC9	High-affinity choline transport protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218762.1.S1_at	E	E	pmrna34488	pmrna34488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218768.1.S1_at	E	E	pmrna34494	pmrna34494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218774.1.S1_at	E	E	pmrna34502	pmrna34502	scaffold_14:17393330-17393754(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218776.1.S1_at	E	E	pmrna34504	pmrna34504	scaffold_14:17293019-17293377(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g26710.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr6g077370.1	"Zinc finger, CCHC-type; Retrotransposon gag protein "	NA	NA	NA
PtpAffx.218779.1.S1_at	E	E	pmrna34507	pmrna34507	NA	NA	O34215	Gluconate 2-dehydrogenase cytochrome c subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218780.1.S1_at	E	E	pmrna34508	pmrna34508	scaffold_27:198655-198871(-) (9)//scaffold_8:3013208-3013424(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218782.1.S1_at	E	E	pmrna34511	pmrna34511	NA	NA	Q45577	Probable amino acid-proton symporter YbeC	AT1G05940.1	cationic amino acid transporter 9 	LOC_Os12g42850.3	"amino acid permease, putative, expressed"	Medtr7g103300.2	Amino acid/polyamine transporter I 	NA	NA	NA
PtpAffx.218787.1.S1_at	E	E	pmrna34516	pmrna34516	NA	NA	NA	NA	AT1G32970.1	Subtilisin-like serine endopeptidase family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218799.1.S1_at	E	E	pmrna34536	pmrna34536	NA	NA	P74985	Arsenical pump membrane protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2188.2.A1_at	E	E	CV230035	CV230035	scaffold_6:23330769-23331138(+) (11)	NA	NA	NA	AT2G25970.1	KH domain-containing protein 	NA	NA	Medtr1g020830.1	"KH, type 1 "	NA	NA	NA
PtpAffx.218800.1.S1_at	E	E	pmrna34537	pmrna34537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218808.1.S1_at	E	E	pmrna34545	pmrna34545	NA	NA	NA	NA	AT5G09840.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os12g06560.1	expressed protein	Medtr3g144270.1	Protein of unknown function DUF537 	NA	NA	NA
PtpAffx.218808.1.S1_s_at	E	E	pmrna34545	pmrna34545	NA	NA	NA	NA	AT5G09840.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os12g06560.1	expressed protein	Medtr3g144270.1	Protein of unknown function DUF537 	NA	NA	NA
PtpAffx.218816.1.S1_at	E	E	pmrna34554	pmrna34554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218842.1.S1_at	E	E	pmrna34582	pmrna34582	NA	NA	A5UJM9	Probable translation initiation factor IF-2	AT1G21160.1	eukaryotic translation initiation factor 2 (eIF-2) family protein 	LOC_Os05g51500.1	"eukaryotic translation initiation factor 5B, putative, expressed"	Medtr1g125430.1	Small GTP-binding protein domain; Translation factor 	NA	NA	NA
PtpAffx.218843.1.S1_at	E	E	pmrna34583	pmrna34583	NA	NA	Q6KZI4	Nucleoside diphosphate kinase	AT4G11010.1	nucleoside diphosphate kinase 3 	LOC_Os05g51700.2	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.2	Nucleoside diphosphate kinase 	NA	NA	NA
PtpAffx.218849.1.S1_at	E	E	pmrna34589	pmrna34589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218864.1.S1_at	E	E	pmrna34607	pmrna34607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21887.1.A1_at	E	E	DN485999	DN485999	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218870.1.S1_x_at	E	E	pmrna34613	pmrna34613	scaffold_11:18285992-18286067(+) (9)//scaffold_13:11804521-11804596(+) (9)//scaffold_19:4054868-4055415(-) (10)//scaffold_5:668620-669167(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218883.1.S1_at	E	E	pmrna34627	pmrna34627	scaffold_1:42125174-42125682(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2189.2.A1_at	E	E	CV225538	CV225538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218942.1.S1_at	E	E	pmrna34705	pmrna34705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218948.1.S1_at	E	E	pmrna34713	pmrna34713	scaffold_14:2937372-2937817(+) (9)//scaffold_59:70588-71033(-) (10)	NA	NA	NA	NA	NA	LOC_Os02g24730.1	"retrotransposon protein, putative, unclassified"	Medtr8g053420.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.21895.1.S1_at	E	E	DN485906	DN485906	NA	NA	Q01359	"Cytochrome c oxidase subunit 6, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218963.1.S1_at	E	E	pmrna34734	pmrna34734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218964.1.S1_at	E	E	pmrna34735	pmrna34735	NA	NA	Q9M1B0	Protein NLP9	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr4g092610.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	NA	NA
PtpAffx.218987.1.S1_at	E	E	pmrna34761	pmrna34761	NA	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os02g37790.1	"retrotransposon protein, putative, unclassified"	Medtr5g089840.1	"copia LTR rider, related "	NA	NA	NA
PtpAffx.21903.1.S1_at	E	E	BU814668	BU814668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219035.1.S1_at	E	E	pmrna34828	pmrna34828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219036.1.S1_at	E	E	pmrna34829	pmrna34829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219037.1.S1_at	E	E	pmrna34830	pmrna34830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219044.1.S1_at	E	E	pmrna34839	pmrna34839	scaffold_1:21920909-21930164(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219077.1.S1_at	E	E	pmrna34884	pmrna34884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219092.1.S1_at	E	E	pmrna34909	pmrna34909	scaffold_1:34586734-34586972(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219096.1.S1_at	E	E	pmrna34915	pmrna34915	scaffold_17:9457086-9457447(-) (11)//scaffold_55:87593-87954(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219098.1.S1_at	E	E	pmrna34917	pmrna34917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219113.1.S1_at	E	E	pmrna34936	pmrna34936	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os08g42570.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g009850.1	Plant protein of unknown function 	NA	NA	NA
PtpAffx.219116.1.S1_at	E	E	pmrna34939	pmrna34939	scaffold_5:652911-653220(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219162.1.S1_at	E	E	pmrna35004	pmrna35004	NA	NA	P0AE21	Methionine aminopeptidase	AT4G37040.1	methionine aminopeptidase 1D 	LOC_Os04g52100.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g017630.1	"Peptidase M24, methionine aminopeptidase "	NA	NA	NA
PtpAffx.219163.1.S1_at	E	E	pmrna35005	pmrna35005	NA	NA	P00393	NADH dehydrogenase	AT2G29990.1	alternative NAD(P)H dehydrogenase 2 	LOC_Os01g61410.1	"NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed"	Medtr4g125430.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	NA	NA	NA
PtpAffx.219164.1.S1_at	E	E	pmrna35006	pmrna35006	NA	NA	P75919	Uncharacterized protein ymdC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219191.1.S1_at	E	E	pmrna35042	pmrna35042	scaffold_35:90038-91404(-) (9)	NA	Q8L6J3	"DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial"	AT1G68990.2	male gametophyte defective 3 	LOC_Os09g07120.2	"DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed"	Medtr8g077250.1	"DNA-directed RNA polymerase, bacteriophage type "	NA	NA	NA
PtpAffx.219195.1.S1_at	E	E	pmrna35047	pmrna35047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219204.1.S1_a_at	E	E	pmrna35058	pmrna35058	NA	NA	Q6PZE0	Mucin-19	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219204.1.S1_at	E	E	pmrna35058	pmrna35058	NA	NA	Q6PZE0	Mucin-19	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219218.1.S1_at	E	E	pmrna35074	pmrna35074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219227.1.S1_at	E	E	pmrna35084	pmrna35084	scaffold_119:38484-38568(+) (9)	NA	NA	NA	AT1G43760.1	DNAse I-like superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219240.1.S1_x_at	E	E	pmrna35097	pmrna35097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219245.1.S1_s_at	E	E	pmrna35104	pmrna35104	NA	NA	NA	NA	NA	NA	NA	NA	AC225526_9.1	NB-ARC; AAA ATPase AC225526.7 43125-36477 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.219253.1.S1_x_at	E	E	pmrna35117	pmrna35117	scaffold_274:23229-23344(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219254.1.S1_at	E	E	pmrna35119	pmrna35119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219254.1.S1_x_at	E	E	pmrna35119	pmrna35119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219257.1.S1_at	E	E	pmrna35123	pmrna35123	NA	NA	Q91DM0	Genome polyprotein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219263.1.S1_s_at	E	E	pmrna35130	pmrna35130	NA	NA	P27161	Calmodulin	AT3G22930.1	calmodulin-like 11 	LOC_Os12g41110.1	"OsCML5 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.219284.1.S1_at	E	E	pmrna35156	pmrna35156	scaffold_13:6329502-6330078(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219294.1.S1_at	E	E	pmrna35169	pmrna35169	NA	NA	Q14FC6	Cytochrome b6-f complex subunit 4	ATCG00730.1	photosynthetic electron transfer D 	LOC_Os10g21326.1	"cytochrome b6-f complex subunit 4, putative"	Medtr4g042520.1	"Cytochrome b/b6, C-terminal; Photosynthetic reaction centre protein cytochrome b6/f_IV "	NA	NA	NA
PtpAffx.219334.1.S1_s_at	E	E	pmrna35223	pmrna35223	scaffold_18:13119047-13119547(+) (11)	NA	P03542	Capsid protein	NA	NA	NA	NA	Medtr6g070760.1	"Zinc finger, CCHC-type "	NA	NA	NA
PtpAffx.219362.1.S1_at	E	E	pmrna35260	pmrna35260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219366.1.S1_at	E	E	pmrna35264	pmrna35264	NA	NA	A4GYQ0	DNA-directed RNA polymerase subunit beta	ATCG00190.1	RNA polymerase subunit beta 	NA	NA	Medtr1g071250.1	"Photosystem antenna protein-like; RNA polymerase Rpb2, domain 6; "	NA	NA	NA
PtpAffx.219389.1.S1_at	E	E	pmrna35309	pmrna35309	scaffold_4:648009-648158(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219400.1.S1_s_at	E	E	pmrna35320	pmrna35320	scaffold_490:6577-6730(+) (11)//scaffold_9:11479558-11479711(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219420.1.S1_at	E	E	pmrna35341	pmrna35341	scaffold_24:61933-65283(-) (10)	NA	NA	NA	AT2G44970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g01930.3	"lipase-related, putative, expressed"	Medtr4g159550.1	"lipase-related, putative "	NA	NA	NA
PtpAffx.219441.1.S1_x_at	E	E	pmrna35362	pmrna35362	NA	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	NA	NA	NA
PtpAffx.21946.1.A1_at	E	E	CV274757	CV274757	scaffold_1:26064513-26064761(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219499.1.S1_at	E	E	pmrna35438	pmrna35438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219499.1.S1_x_at	E	E	pmrna35438	pmrna35438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219506.1.S1_at	E	E	pmrna35448	pmrna35448	NA	NA	C0LGN2	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	AT3G14840.2	Leucine-rich repeat transmembrane protein kinase 	NA	NA	Medtr5g091330.1	Protein kinase 	NA	NA	NA
PtpAffx.219516.1.S1_at	E	E	pmrna35459	pmrna35459	NA	NA	Q01610	Putative transcriptional regulator	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219517.1.S1_at	E	E	pmrna35460	pmrna35460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219518.1.S1_at	E	E	pmrna35461	pmrna35461	NA	NA	Q05202	Ferrichrome receptor fcuA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219531.1.S1_at	E	E	pmrna35474	pmrna35474	NA	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g07230.3	"receptor kinase, putative, expressed"	Medtr5g025920.1	"Protein kinase; Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	NA
PtpAffx.219575.1.S1_s_at	E	E	pmrna35532	pmrna35532	NA	NA	A4GYP3	"ATP synthase subunit alpha, chloroplastic"	ATCG00120.1	ATP synthase subunit alpha 	LOC_Os04g16740.1	"ATP synthase subunit alpha, putative, expressed"	Medtr4g042360.1	ATPase FliI/YscN 	NA	NA	NA
PtpAffx.219581.1.S1_at	E	E	pmrna35539	pmrna35539	NA	NA	P41248	Putative ATP synthase protein YMF19	ATMG00480.1	"Plant mitochondrial ATPase, F0 complex, subunit 8 protein "	LOC_Os12g34018.1	"ATP synthase protein YMF19, putative, expressed"	Medtr7g123860.1	"ATPase subunit 8, plant "	NA	NA	NA
PtpAffx.219585.1.S1_at	E	E	pmrna35543	pmrna35543	NA	NA	P13036	Fe(3+) dicitrate transport protein fecA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219588.1.S1_at	E	E	pmrna35546	pmrna35546	NA	NA	O64705	Pentatricopeptide repeat-containing protein At2g34400	AT2G34400.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os05g24150.1	"tetratricopeptide-like helical, putative, expressed"	Medtr2g041810.1	Pentatricopeptide repeat 	NA	NA	NA
PtpAffx.219642.1.S1_s_at	E	E	pmrna35605	pmrna35605	scaffold_18:13121765-13122084(+) (11)//scaffold_2:22823099-22823418(-) (11)//scaffold_2:22826714-22827033(+) (11)	NA	Q02964	Enzymatic polyprotein	NA	NA	LOC_Os12g42720.1	"retrotransposon protein, putative, unclassified"	Medtr5g062290.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.219643.1.S1_s_at	E	E	pmrna35606	pmrna35606	scaffold_18:13122696-13123126(+) (11)//scaffold_2:22822057-22822487(-) (11)//scaffold_2:22827645-22828075(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219652.1.S1_at	E	E	pmrna35616	pmrna35616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219654.1.S1_s_at	E	E	pmrna35618	pmrna35618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219655.1.S1_at	E	E	pmrna35619	pmrna35619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219655.1.S1_s_at	E	E	pmrna35619	pmrna35619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219656.1.S1_at	E	E	pmrna35620	pmrna35620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219657.1.S1_at	E	E	pmrna35623	pmrna35623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219660.1.S1_at	E	E	pmrna35627	pmrna35627	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219668.1.S1_at	E	E	pmrna35635	pmrna35635	NA	NA	O31603	Uncharacterized membrane protein yjbE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219670.1.S1_at	E	E	pmrna35637	pmrna35637	NA	NA	P11764	Fimbrial protein P9-2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219681.1.S1_at	E	E	pmrna35651	pmrna35651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219695.1.S1_at	E	E	pmrna35678	pmrna35678	scaffold_6:11714693-11714830(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219760.1.S1_at	E	E	pmrna35815	pmrna35815	NA	NA	Q9SL29	Putative cyclic nucleotide-gated ion channel 15	AT2G28260.1	cyclic nucleotide-gated channel 15 	LOC_Os02g15580.1	"cyclic nucleotide-gated ion channel 1, putative, expressed"	Medtr1g076850.1	Cyclic nucleotide-binding; Ion transport protein 	NA	NA	NA
PtpAffx.219854.1.S1_x_at	E	E	pmrna36004	pmrna36004	scaffold_1:48211664-48212061(+) (11)//scaffold_291:4646-5043(+) (11)//scaffold_3:10282404-10282801(-) (11)//scaffold_5:2091381-2091778(+) (11)//scaffold_75:75483-75880(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219861.1.S1_at	E	E	pmrna36015	pmrna36015	NA	NA	P24305	Outer membrane porin protein 32	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219862.1.S1_at	E	E	pmrna36016	pmrna36016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219889.1.S1_at	E	E	pmrna36045	pmrna36045	NA	NA	Q3A6S7	tRNA 2-thiocytidine biosynthesis protein TtcA	AT2G44270.1	repressor of lrx1 	LOC_Os02g52470.2	"ATP-binding domain-containing protein, putative, expressed"	Medtr3g163830.1	PP-loop 	NA	NA	NA
PtpAffx.219890.1.S1_at	E	E	pmrna36046	pmrna36046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219912.1.S1_s_at	E	E	pmrna36076	pmrna36076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219920.1.S1_at	E	E	pmrna36085	pmrna36085	NA	NA	NA	NA	AT4G01810.1	Sec23/Sec24 protein transport family protein 	LOC_Os01g21850.2	"protein transport protein-related, putative, expressed"	Medtr7g134070.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Sec23/Sec24 beta-sandwich "	NA	NA	NA
PtpAffx.219921.1.S1_at	E	E	pmrna36086	pmrna36086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219923.1.S1_at	E	E	pmrna36090	pmrna36090	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g006390.1	hypothetical protein 	NA	NA	NA
PtpAffx.219925.1.S1_at	E	E	pmrna36092	pmrna36092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219928.1.S1_at	E	E	pmrna36096	pmrna36096	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g043640.1	hypothetical protein 	NA	NA	NA
PtpAffx.219929.1.S1_at	E	E	pmrna36097	pmrna36097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219930.1.S1_s_at	E	E	pmrna36098	pmrna36098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219931.1.S1_s_at	E	E	pmrna36099	pmrna36099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219955.1.S1_at	E	E	pmrna36127	pmrna36127	scaffold_9:1507118-1507746(-) (10)	NA	Q6NY74	Replication protein A 70 kDa DNA-binding subunit	AT1G52950.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os07g09300.1	"retrotransposon protein, putative, unclassified"	AC235009_19.1	"Nucleic acid-binding, OB-fold, subgroup AC235009.1 77250-79864 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.219967.1.S1_at	E	E	pmrna36160	pmrna36160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219984.1.S1_at	E	E	pmrna36196	pmrna36196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220005.1.S1_at	E	E	pmrna36240	pmrna36240	NA	NA	Q9LKI5	DNA repair endonuclease UVH1	AT5G41150.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os03g01100.1	"endonuclease, putative, expressed"	Medtr5g013620.1	ERCC4 	NA	NA	NA
PtpAffx.220013.1.S1_at	E	E	pmrna36250	pmrna36250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220038.1.S1_at	E	E	pmrna36300	pmrna36300	scaffold_1:2183526-2183899(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g147880.1	Ribonuclease H 	NA	NA	NA
PtpAffx.220044.1.S1_at	E	E	pmrna36313	pmrna36313	scaffold_11:11422097-11422571(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220056.1.S1_x_at	E	E	pmrna36332	pmrna36332	scaffold_1:1863131-1864259(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220125.1.S1_at	E	E	pmrna36466	pmrna36466	scaffold_1:803325-804049(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220142.1.S1_at	E	E	pmrna36492	pmrna36492	scaffold_1:627884-628480(-) (9)	NA	NA	NA	AT1G20925.1	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	Medtr8g087050.1	Auxin Efflux Carrier 	NA	NA	NA
PtpAffx.220179.1.S1_at	E	E	pmrna36533	pmrna36533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220191.1.S1_at	E	E	pmrna36547	pmrna36547	NA	NA	A4GYP8	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	LOC_Os04g16830.1	"DNA-directed RNA polymerase subunit beta, putative"	Medtr4g042160.1	"RNA polymerase Rpb1, domain 5 "	NA	NA	NA
PtpAffx.220193.1.S1_x_at	E	E	pmrna36549	pmrna36549	scaffold_3:6558500-6558799(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220199.1.S1_x_at	E	E	pmrna36556	pmrna36556	scaffold_220:15107-15654(+) (11)//scaffold_5:668587-669134(+) (10)//scaffold_6:12745477-12746024(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220255.1.S1_at	E	E	pmrna36617	pmrna36617	NA	NA	Q99JR6	Nicotinamide mononucleotide adenylyltransferase 3	AT5G55810.1	nicotinate/nicotinamide mononucleotide adenyltransferase 	LOC_Os09g17870.1	"cytidylyltransferase domain containing protein, expressed"	Medtr5g103570.1	Cytidylyltransferase 	NA	NA	NA
PtpAffx.220312.1.S1_at	E	E	pmrna36682	pmrna36682	scaffold_14:495201-495555(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220317.1.S1_at	E	E	pmrna36688	pmrna36688	scaffold_14:336692-336869(+) (10)//scaffold_14:539196-539373(+) (11)//scaffold_14:1156991-1157168(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220345.1.S1_at	E	E	pmrna36721	pmrna36721	scaffold_12:2965550-2965800(+) (11)//scaffold_19:11440756-11441005(-) (9)//scaffold_2:16323146-16323396(+) (11)//scaffold_3:19074484-19074734(-) (11)//scaffold_3:19078766-19079016(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g61660.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.220349.1.S1_x_at	E	E	pmrna36726	pmrna36726	NA	NA	NA	NA	NA	NA	LOC_Os05g40930.1	"retrotransposon protein, putative, unclassified"	Medtr6g077370.1	"Zinc finger, CCHC-type; Retrotransposon gag protein "	NA	NA	NA
PtpAffx.220363.1.S1_at	E	E	pmrna36741	pmrna36741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220401.1.S1_at	E	E	pmrna36782	pmrna36782	NA	NA	P09163	Uncharacterized N-acetyltransferase yjaB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220402.1.S1_at	E	E	pmrna36783	pmrna36783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220453.1.S1_at	E	E	pmrna36845	pmrna36845	NA	NA	Q478Z5	Recombination-associated protein rdgC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220455.1.S1_at	E	E	pmrna36847	pmrna36847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220481.1.S1_at	E	E	pmrna36874	pmrna36874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220482.1.S1_at	E	E	pmrna36875	pmrna36875	NA	NA	P07061	6-aminohexanoate-dimer hydrolase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220483.1.S1_at	E	E	pmrna36876	pmrna36876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220501.1.S1_at	E	E	pmrna36894	pmrna36894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220502.1.S1_at	E	E	pmrna36895	pmrna36895	NA	NA	A1KHB7	Response regulator mprA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220503.1.S1_at	E	E	pmrna36896	pmrna36896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220504.1.S1_at	E	E	pmrna36897	pmrna36897	NA	NA	Q9P6J2	Fe(2+)/Mn(2+) transporter pcl1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220526.1.S1_at	E	E	pmrna36928	pmrna36928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220527.1.S1_at	E	E	pmrna36929	pmrna36929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220528.1.S1_at	E	E	pmrna36930	pmrna36930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220540.1.S1_at	E	E	pmrna36944	pmrna36944	NA	NA	Q7NZU6	Lipid A export ATP-binding/permease protein MsbA	AT2G47000.1	ATP binding cassette subfamily B4 	LOC_Os03g08380.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g105890.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	NA	NA	NA
PtpAffx.220542.1.S1_at	E	E	pmrna36946	pmrna36946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220544.1.S1_at	E	E	pmrna36948	pmrna36948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220546.1.S1_at	E	E	pmrna36950	pmrna36950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220586.1.S1_at	E	E	pmrna36991	pmrna36991	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220587.1.S1_at	E	E	pmrna36992	pmrna36992	NA	NA	P37511	Uncharacterized transporter yyaM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220588.1.S1_a_at	E	E	pmrna36993	pmrna36993	scaffold_6:15419188-15424242(-) (10)//scaffold_6:15419919-15429566(-) (10)//scaffold_6:15420207-15429997(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220588.1.S1_at	E	E	pmrna36993	pmrna36993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220594.1.S1_at	E	E	pmrna36999	pmrna36999	NA	NA	Q79S39	HTH-type transcriptional regulator for conjugative element SXT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220595.1.S1_at	E	E	pmrna37000	pmrna37000	NA	NA	Q9RYD8	Probable chromosome 1-partitioning protein parB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220621.1.S1_at	E	E	pmrna37027	pmrna37027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220622.1.S1_at	E	E	pmrna37028	pmrna37028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220631.1.S1_at	E	E	pmrna37041	pmrna37041	scaffold_57:76567-76639(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220632.1.S1_at	E	E	pmrna37042	pmrna37042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220691.1.S1_at	E	E	pmrna37103	pmrna37103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220709.1.S1_at	E	E	pmrna37125	pmrna37125	scaffold_1:25422966-25423240(-) (11)//scaffold_1:46803271-46803545(+) (11)//scaffold_17:8315920-8316194(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220715.1.S1_at	E	E	pmrna37131	pmrna37131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220726.1.S1_x_at	E	E	pmrna37142	pmrna37142	NA	NA	P69386	Cytochrome b559 subunit alpha	ATCG00580.1	photosystem II reaction center protein E 	LOC_Os10g21298.1	"cytochrome b559 subunit alpha, putative"	Medtr4g042270.1	Photosystem II protein PsbL; Photosystem II protein cytochrome b559; 	NA	NA	NA
PtpAffx.220728.1.S1_at	E	E	pmrna37144	pmrna37144	NA	NA	Q67H85	Cytochrome b559 subunit beta	ATCG00570.1	photosystem II reaction center protein F 	NA	NA	Medtr4g042270.1	Photosystem II protein PsbL; Photosystem II protein cytochrome b559; 	NA	NA	NA
PtpAffx.220744.1.S1_s_at	E	E	pmrna37165	pmrna37165	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220746.1.S1_x_at	E	E	pmrna37167	pmrna37167	NA	NA	P0CD35	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043720.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.220763.1.S1_at	E	E	pmrna37186	pmrna37186	NA	NA	B1NWF7	"ATP synthase subunit beta, chloroplastic"	ATCG00480.1	ATP synthase subunit beta 	LOC_Os10g21266.1	"ATP synthase subunit beta, putative"	Medtr3g043810.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, delta/epsilon subunit "	NA	NA	NA
PtpAffx.220764.1.S1_s_at	E	E	pmrna37187	pmrna37187	NA	NA	NA	NA	NA	NA	NA	NA	Medtr6g013390.1	"Mitochondrial ribosomal protein S1, related "	NA	NA	NA
PtpAffx.220767.1.S1_at	E	E	pmrna37192	pmrna37192	NA	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220768.1.S1_s_at	E	E	pmrna37193	pmrna37193	NA	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220770.1.S1_s_at	E	E	pmrna37195	pmrna37195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220783.1.S1_at	E	E	pmrna37214	pmrna37214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220786.1.S1_at	E	E	pmrna37218	pmrna37218	scaffold_11:13404555-13404822(-) (11)//scaffold_8:11630847-11631114(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220792.1.S1_at	E	E	pmrna37229	pmrna37229	scaffold_1:12468456-12468581(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220796.1.S1_at	E	E	pmrna37234	pmrna37234	scaffold_5:9011512-9017954(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220802.1.S1_s_at	E	E	pmrna37242	pmrna37242	scaffold_113:63975-64008(+) (10)//scaffold_6:18386861-18386894(+) (10)	NA	NA	NA	NA	NA	LOC_Os10g01750.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.220802.1.S1_x_at	E	E	pmrna37242	pmrna37242	scaffold_6:18386749-18386915(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g01750.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.220804.1.S1_at	E	E	pmrna37244	pmrna37244	scaffold_1107:6695-7207(-) (11)	NA	NA	NA	AT3G21000.1	Gag-Pol-related retrotransposon family protein 	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.220807.1.S1_at	E	E	pmrna37247	pmrna37247	scaffold_5:10223656-10223727(+) (11)//scaffold_5:25788671-25788742(+) (11)	NA	NA	NA	AT1G43760.1	DNAse I-like superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220811.1.S1_s_at	E	E	pmrna37251	pmrna37251	scaffold_17:4371850-4372323(-) (11)	NA	Q02964	Enzymatic polyprotein	NA	NA	LOC_Os12g42720.1	"retrotransposon protein, putative, unclassified"	Medtr5g062290.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.220817.1.S1_x_at	E	E	pmrna37258	pmrna37258	scaffold_1:42144331-42144459(-) (11)//scaffold_1:48216965-48217093(-) (11)//scaffold_112:51852-51951(+) (10)//scaffold_86:14668-14796(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220825.1.S1_at	E	E	pmrna37271	pmrna37271	scaffold_1:40987970-40988474(-) (11)	NA	NA	NA	AT5G48050.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	Medtr4g125340.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.220826.1.S1_at	E	E	pmrna37272	pmrna37272	scaffold_13:100291-100861(-) (11)	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	Medtr2g038510.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.220832.1.S1_x_at	E	E	pmrna37278	pmrna37278	NA	NA	NA	NA	NA	NA	LOC_Os06g25550.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.220835.1.S1_at	E	E	pmrna37281	pmrna37281	scaffold_18:2911848-2912048(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr2g010050.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.220842.1.S1_at	E	E	pmrna37290	pmrna37290	NA	NA	O80809	Leucine-rich repeat receptor-like protein CLAVATA2	AT1G65380.1	Leucine-rich repeat (LRR) family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	NA	NA
PtpAffx.220842.1.S1_x_at	E	E	pmrna37290	pmrna37290	NA	NA	O80809	Leucine-rich repeat receptor-like protein CLAVATA2	AT1G65380.1	Leucine-rich repeat (LRR) family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	NA	NA
PtpAffx.220851.1.S1_at	E	E	pmrna37301	pmrna37301	NA	NA	NA	NA	AT3G59990.4	methionine aminopeptidase 2B 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220852.1.S1_at	E	E	pmrna37303	pmrna37303	scaffold_1214:987-1437(+) (11)//scaffold_1800:152-603(+) (11)//scaffold_19:2858661-2859112(-) (11)	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g13540.1	"retrotransposon protein, putative, unclassified"	Medtr4g125340.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.220855.1.S1_at	E	E	pmrna37310	pmrna37310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220856.1.S1_at	E	E	pmrna37311	pmrna37311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220857.1.S1_at	E	E	pmrna37312	pmrna37312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220858.1.S1_at	E	E	pmrna37313	pmrna37313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220859.1.S1_at	E	E	pmrna37314	pmrna37314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220872.1.S1_at	E	E	pmrna37329	pmrna37329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220879.1.S1_at	E	E	pmrna37341	pmrna37341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220880.1.S1_at	E	E	pmrna37343	pmrna37343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220881.1.S1_s_at	E	E	pmrna37347	pmrna37347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220883.1.S1_s_at	E	E	pmrna37349	pmrna37349	scaffold_1392:902-1595(+) (10)	NA	Q5BJZ6	UPF0586 protein C9orf41 homolog	AT2G32170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g43560.1	"AGAP007115-PA, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.220887.1.S1_s_at	E	E	pmrna37356	pmrna37356	NA	NA	Q31708	"Ribosomal protein S4, mitochondrial"	ATMG00290.1	mitochondrial ribosomal protein S4 	NA	NA	Medtr1g005030.1	RNA-binding S4 	NA	NA	NA
PtpAffx.220888.1.S1_s_at	E	E	pmrna37357	pmrna37357	NA	NA	A4GYQ4	Photosystem II D2 protein	ATCG00270.1	photosystem II reaction center protein D 	LOC_Os10g41689.1	"photosystem II D2 protein, putative"	Medtr4g098620.1	Photosynthetic reaction centre protein 	NA	NA	NA
PtpAffx.220891.1.S1_s_at	E	E	pmrna37360	pmrna37360	NA	NA	P93312	Uncharacterized tatC-like protein ymf16	ATMG00570.1	Sec-independent periplasmic protein translocase 	LOC_Os12g33962.1	"uncharacterized tatC-like protein ymf16, putative, expressed"	Medtr1g108640.1	Sec-independent periplasmic protein translocase 	NA	NA	NA
PtpAffx.220904.1.S1_at	E	E	pmrna37379	pmrna37379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220920.1.S1_at	E	E	pmrna37405	pmrna37405	scaffold_2:22735464-22735913(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.220937.1.S1_at	E	E	pmrna37432	pmrna37432	NA	NA	Q9SJZ3	"Pentatricopeptide repeat-containing protein At2g22410, mitochondrial"	AT2G22410.1	SLOW GROWTH 1 	LOC_Os12g13110.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.220954.1.S1_at	E	E	pmrna37452	pmrna37452	scaffold_12:2578688-2580990(+) (11)	NA	Q7ZZ25	ATPase family AAA domain-containing protein 1-A	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.2	"AAA-type ATPase family protein, putative"	Medtr3g123350.1	"AAA ATPase, central region "	NA	NA	NA
PtpAffx.220982.1.S1_x_at	E	E	pmrna37490	pmrna37490	scaffold_8:14716696-14716828(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220984.1.S1_at	E	E	pmrna37493	pmrna37493	NA	NA	Q6EI06	DELLA protein GAIP	AT1G66350.1	RGA-like 1 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	NA	NA
PtpAffx.220989.1.S1_at	E	E	pmrna37506	pmrna37506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221020.1.S1_at	E	E	pmrna37556	pmrna37556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221174.1.S1_at	E	E	pmrna37840	pmrna37840	scaffold_14:2476637-2476801(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221210.1.S1_at	E	E	pmrna37922	pmrna37922	scaffold_14:1842800-1842952(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221219.1.S1_at	E	E	pmrna37938	pmrna37938	scaffold_14:1779755-1780221(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221224.1.S1_at	E	E	pmrna37956	pmrna37956	scaffold_16:10502615-10547259(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221226.1.S1_at	E	E	pmrna37959	pmrna37959	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221231.1.S1_s_at	E	E	pmrna37965	pmrna37965	NA	NA	NA	NA	AT5G57010.1	calmodulin-binding family protein 	LOC_Os11g05340.1	"transposon protein, putative, unclassified"	Medtr2g046520.2	IQ calmodulin-binding region 	NA	NA	NA
PtpAffx.221233.1.S1_at	E	E	pmrna37967	pmrna37967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221234.1.S1_at	E	E	pmrna37968	pmrna37968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221235.1.S1_at	E	E	pmrna37969	pmrna37969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221236.1.S1_at	E	E	pmrna37970	pmrna37970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221238.1.S1_at	E	E	pmrna37973	pmrna37973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221241.1.S1_s_at	E	E	pmrna37982	pmrna37982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221242.1.S1_at	E	E	pmrna37983	pmrna37983	NA	NA	NA	NA	AT1G73050.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os10g38050.1	"HOTHEAD precursor, putative, expressed"	Medtr4g023240.1	Alcohol oxidase 	NA	NA	NA
PtpAffx.221242.1.S1_s_at	E	E	pmrna37983	pmrna37983	NA	NA	NA	NA	AT1G73050.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os10g38050.1	"HOTHEAD precursor, putative, expressed"	Medtr4g023240.1	Alcohol oxidase 	NA	NA	NA
PtpAffx.221243.1.S1_s_at	E	E	pmrna37985	pmrna37985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221263.1.S1_at	E	E	pmrna38021	pmrna38021	scaffold_13:13047102-13047457(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221270.1.S1_at	E	E	pmrna38031	pmrna38031	scaffold_13:12867424-12867670(-) (10)//scaffold_19:13652652-13652898(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221310.1.S1_at	E	E	pmrna38106	pmrna38106	NA	NA	NA	NA	AT5G24600.2	"Protein of unknown function, DUF599 "	LOC_Os02g19060.1	expressed protein	Medtr5g077330.1	Protein of unknown function DUF599 	NA	NA	NA
PtpAffx.221312.1.S1_at	E	E	pmrna38108	pmrna38108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221356.1.S1_at	E	E	pmrna38208	pmrna38208	NA	NA	Q6YM50	"Mannan endo-1,4-beta-mannosidase 5"	AT5G66460.1	Glycosyl hydrolase superfamily protein 	LOC_Os03g61280.2	"OsMan05 - Endo-Beta-Mannanase, expressed"	Medtr4g118250.1	"Glycoside hydrolase, family 5 "	NA	NA	NA
PtpAffx.221372.1.S1_at	E	E	pmrna38234	pmrna38234	scaffold_5:15833604-15833717(+) (10)	NA	NA	NA	NA	NA	LOC_Os06g43150.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.221378.1.S1_at	E	E	pmrna38249	pmrna38249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221379.1.S1_at	E	E	pmrna38250	pmrna38250	NA	NA	Q1MK43	ATP-dependent Clp protease proteolytic subunit 1	AT5G23140.1	nuclear-encoded CLP protease P7 	LOC_Os04g44400.1	"OsClp7 - Putative Clp protease homologue, expressed"	Medtr4g101010.1	"Peptidase S14, ClpP "	NA	NA	NA
PtpAffx.221380.1.S1_at	E	E	pmrna38251	pmrna38251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221400.1.S1_at	E	E	pmrna38273	pmrna38273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221402.1.S1_at	E	E	pmrna38275	pmrna38275	NA	NA	Q04614	NADH-ubiquinone oxidoreductase chain 4L	ATMG00650.1	NADH dehydrogenase subunit 4L 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221403.1.S1_at	E	E	pmrna38276	pmrna38276	NA	NA	Q04613	ATP synthase protein MI25	ATMG00640.1	"hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding "	LOC_Os12g14930.1	"ATP synthase protein MI25, putative, expressed"	Medtr6g036580.1	Mitochondrial ATP synthase B chain 	NA	NA	NA
PtpAffx.221404.1.S1_at	E	E	pmrna38277	pmrna38277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221406.1.S1_at	E	E	pmrna38280	pmrna38280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221417.1.S1_at	E	E	pmrna38299	pmrna38299	NA	NA	P28614	Acetoin catabolism regulatory protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221418.1.S1_at	E	E	pmrna38300	pmrna38300	NA	NA	Q48IV1	Blue-light-activated protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221427.1.S1_s_at	E	E	pmrna38310	pmrna38310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221431.1.S1_s_at	E	E	pmrna38315	pmrna38315	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g006390.1	hypothetical protein 	NA	NA	NA
PtpAffx.221433.1.S1_at	E	E	pmrna38318	pmrna38318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221433.1.S1_s_at	E	E	pmrna38318	pmrna38318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221441.1.S1_at	E	E	pmrna38331	pmrna38331	scaffold_10:1710642-1710682(-) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.2	time for coffee 	LOC_Os07g38360.4	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	NA	NA	NA
PtpAffx.221456.1.S1_at	E	E	pmrna38352	pmrna38352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221458.1.S1_at	E	E	pmrna38354	pmrna38354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221483.1.S1_at	E	E	pmrna38386	pmrna38386	scaffold_3:2462311-2462574(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g100610.1	"RNA-directed DNA polymerase (reverse transcriptase), related "	NA	NA	NA
PtpAffx.221523.1.S1_at	E	E	pmrna38451	pmrna38451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221562.1.S1_at	E	E	pmrna38503	pmrna38503	NA	NA	Q14FD4	"50S ribosomal protein L20, chloroplastic"	ATCG00660.1	ribosomal protein L20 	NA	NA	Medtr4g042390.1	Ribosomal protein L20 	NA	NA	NA
PtpAffx.221562.1.S1_x_at	E	E	pmrna38503	pmrna38503	NA	NA	Q14FD4	"50S ribosomal protein L20, chloroplastic"	ATCG00660.1	ribosomal protein L20 	NA	NA	Medtr4g042390.1	Ribosomal protein L20 	NA	NA	NA
PtpAffx.221623.1.S1_at	E	E	pmrna38598	pmrna38598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221623.1.S1_x_at	E	E	pmrna38598	pmrna38598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221624.1.S1_at	E	E	pmrna38599	pmrna38599	scaffold_1721:1555-1842(-) (11)//scaffold_18:6812033-6812320(-) (11)	NA	NA	NA	AT1G48720.1	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221627.1.S1_s_at	E	E	pmrna38603	pmrna38603	NA	NA	P92527	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein	ATMG00900.1	cytochrome C biogenesis 256 	LOC_Os12g34012.1	"cytochrome c biosynthesis ccmC-like mitochondrial protein, putative"	NA	NA	NA	NA	NA
PtpAffx.221645.1.S1_at	E	E	pmrna38629	pmrna38629	NA	NA	Q0TUZ0	Inosose dehydratase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221647.1.S1_at	E	E	pmrna38631	pmrna38631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221651.1.S1_at	E	E	pmrna38636	pmrna38636	scaffold_13:12582862-12583150(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221659.1.S1_at	E	E	pmrna38655	pmrna38655	NA	NA	Q8S4W7	DELLA protein GAI1	AT2G01570.1	GRAS family transcription factor family protein 	LOC_Os03g49990.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	NA	NA
PtpAffx.221673.1.S1_x_at	E	E	pmrna38675	pmrna38675	scaffold_11:18285325-18285613(+) (9)//scaffold_13:11803854-11804142(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221691.1.S1_s_at	E	E	pmrna38705	pmrna38705	scaffold_1523:295-339(-) (11)//scaffold_4:22648494-22648538(+) (11)	NA	NA	NA	AT3G05390.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os04g36710.1	methyltransferase domain containing protein	Medtr2g034180.1	Methyltransferase type 11 	NA	NA	NA
PtpAffx.221708.1.S1_at	E	E	pmrna38731	pmrna38731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221708.1.S1_x_at	E	E	pmrna38731	pmrna38731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221710.1.S1_at	E	E	pmrna38735	pmrna38735	NA	NA	Q38959	"Pentatricopeptide repeat-containing protein At3g26630, chloroplastic"	AT3G26630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g15090.1	"diacylglycerol kinase catalytic domain family protein, expressed"	Medtr7g099640.1	Asp/Glu racemase 	NA	NA	NA
PtpAffx.221710.1.S1_s_at	E	E	pmrna38735	pmrna38735	NA	NA	Q38959	"Pentatricopeptide repeat-containing protein At3g26630, chloroplastic"	AT3G26630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g15090.1	"diacylglycerol kinase catalytic domain family protein, expressed"	Medtr7g099640.1	Asp/Glu racemase 	NA	NA	NA
PtpAffx.221719.1.S1_at	E	E	pmrna38748	pmrna38748	scaffold_19:13898752-13899093(-) (9)//scaffold_20:525565-525906(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221722.1.S1_at	E	E	pmrna38753	pmrna38753	scaffold_3:1769772-1769938(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221723.1.S1_at	E	E	pmrna38755	pmrna38755	scaffold_3:1789179-1790238(+) (10)	NA	NA	NA	NA	NA	LOC_Os03g56910.1	"retrotransposon protein, putative, LINE subclass"	Medtr3g064910.1	Endonuclease/exonuclease/phosphatase 	NA	NA	NA
PtpAffx.221734.1.S1_at	E	E	pmrna38773	pmrna38773	NA	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT4G20140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os06g38990.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.221749.1.S1_at	E	E	pmrna38793	pmrna38793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221750.1.S1_at	E	E	pmrna38794	pmrna38794	NA	NA	P68536	"Ribosomal protein S12, mitochondrial"	ATMG00980.1	Ribosomal protein S12/S23 family protein 	LOC_Os12g34144.1	"mitochondrial ribosomal protein S12, putative"	Medtr1g005040.1	"Ribosomal protein S12, bacterial and chloroplast form "	NA	NA	NA
PtpAffx.221751.1.S1_at	E	E	pmrna38795	pmrna38795	NA	NA	P05499	ATP synthase subunit a	ATMG00410.1	ATPase subunit 6-1 	LOC_Os12g23610.1	"ATP synthase, A subunit family protein, putative"	Medtr8g093010.1	hypothetical protein 	NA	NA	NA
PtpAffx.221753.1.S1_at	E	E	pmrna38797	pmrna38797	NA	NA	P92812	"60S ribosomal protein L2, mitochondrial"	ATMG00560.1	"Nucleic acid-binding, OB-fold-like protein "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221753.1.S1_s_at	E	E	pmrna38797	pmrna38797	NA	NA	P92812	"60S ribosomal protein L2, mitochondrial"	ATMG00560.1	"Nucleic acid-binding, OB-fold-like protein "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22176.2.S1_at	E	E	BU874098	BU874098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221768.1.S1_at	E	E	pmrna38817	pmrna38817	scaffold_11:2704586-2704869(-) (11)	NA	NA	NA	AT4G18240.1	starch synthase 4 	LOC_Os05g45720.2	"starch synthase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.221788.1.S1_at	E	E	pmrna38840	pmrna38840	scaffold_1:15588546-15588779(+) (11)//scaffold_10:1722159-1722392(+) (11)//scaffold_13:5263094-5263327(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221796.1.S1_at	E	E	pmrna38850	pmrna38850	scaffold_4:5392229-5392411(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221806.1.S1_at	E	E	pmrna38865	pmrna38865	scaffold_56:47296-47601(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221809.1.S1_at	E	E	pmrna38869	pmrna38869	NA	NA	Q9BW60	Elongation of very long chain fatty acids protein 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221823.1.S1_at	E	E	pmrna38897	pmrna38897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221837.1.S1_at	E	E	pmrna38916	pmrna38916	NA	NA	Q7MQ42	Vitamin B12 transporter BtuB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221838.1.S1_at	E	E	pmrna38917	pmrna38917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221845.1.S1_at	E	E	pmrna38929	pmrna38929	NA	NA	NA	NA	AT1G66170.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os03g50780.1	"PHD-finger domain containing protein, putative, expressed"	Medtr5g085540.1	"Calcium-binding EF-hand; Zinc finger, FYVE/PHD-type "	NA	NA	NA
PtpAffx.221847.1.S1_at	E	E	pmrna38931	pmrna38931	NA	NA	P93286	Putative cytochrome c biogenesis ccmF-like mitochondrial protein	ATMG00180.1	cytochrome C biogenesis 452 	NA	NA	Medtr1g005420.1	"Cytochrome c biogenesis ccmF-like mitochondrial protein, putative "	NA	NA	NA
PtpAffx.221848.1.S1_at	E	E	pmrna38932	pmrna38932	scaffold_5:21450524-21450621(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221854.1.S1_at	E	E	pmrna38943	pmrna38943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221865.1.S1_at	E	E	pmrna38958	pmrna38958	NA	NA	A5DCV3	DNA-directed RNA polymerase II subunit RPB1 (Fragments)	AT4G35800.1	RNA polymerase II large subunit 	LOC_Os08g05940.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g023000.1	"Protein kinase; RNA polymerase Rpb1, domain 6 "	NA	NA	NA
PtpAffx.221876.1.S1_at	E	E	pmrna38977	pmrna38977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221877.1.S1_at	E	E	pmrna38978	pmrna38978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221877.1.S1_x_at	E	E	pmrna38978	pmrna38978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221881.1.S1_at	E	E	pmrna38984	pmrna38984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221881.1.S1_x_at	E	E	pmrna38984	pmrna38984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221899.1.S1_at	E	E	pmrna39006	pmrna39006	scaffold_317:4824-5140(-) (11)	NA	NA	NA	NA	NA	LOC_Os08g39780.1	"retrotransposon protein, putative, unclassified"	Medtr3g061730.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.221915.1.S1_at	E	E	pmrna39031	pmrna39031	NA	NA	O80327	Thaumatin-like protein 1	AT1G20030.2	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	NA	NA	NA
PtpAffx.221923.1.S1_at	E	E	pmrna39040	pmrna39040	scaffold_3:12688186-12688815(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g28310.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.222006.1.S1_at	E	E	pmrna39195	pmrna39195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222007.1.S1_at	E	E	pmrna39196	pmrna39196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222008.1.S1_at	E	E	pmrna39197	pmrna39197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222009.1.S1_at	E	E	pmrna39198	pmrna39198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222010.1.S1_at	E	E	pmrna39199	pmrna39199	NA	NA	P39434	Soluble lytic murein transglycosylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222012.1.S1_x_at	E	E	pmrna39202	pmrna39202	scaffold_1980:1992-2088(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222014.1.S1_at	E	E	pmrna39204	pmrna39204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222031.1.S1_at	E	E	pmrna39227	pmrna39227	NA	NA	Q5ZIN1	Nuclear migration protein nudC	AT5G53400.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	NA	NA	NA
PtpAffx.222035.1.S1_at	E	E	pmrna39232	pmrna39232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222041.1.S1_at	E	E	pmrna39242	pmrna39242	NA	NA	NA	NA	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os04g55390.1	plant protein of unknown function domain containing protein	Medtr7g011230.1	Plant protein of unknown function 	NA	NA	NA
PtpAffx.222050.1.S1_x_at	E	E	pmrna39253	pmrna39253	scaffold_1:29437906-29438022(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222063.1.S1_at	E	E	pmrna39268	pmrna39268	scaffold_18:13115466-13115905(+) (11)//scaffold_18:13123542-13123981(+) (11)	NA	P09524	Transactivator/viroplasmin protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222088.1.S1_at	E	E	pmrna39299	pmrna39299	NA	NA	Q7D547	Putative conjugal transfer protein Rv3659c/MT3759	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222089.1.S1_at	E	E	pmrna39300	pmrna39300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222090.1.S1_at	E	E	pmrna39301	pmrna39301	NA	NA	Q36450	NADH-ubiquinone oxidoreductase 49 kDa subunit	ATMG00510.1	NADH dehydrogenase subunit 7 	LOC_Os12g33958.1	"NADH-ubiquinone oxidoreductase 49 kDa subunit, putative"	NA	NA	NA	NA	NA
PtpAffx.222091.1.S1_at	E	E	pmrna39304	pmrna39304	NA	NA	Q14FD4	"50S ribosomal protein L20, chloroplastic"	ATCG00660.1	ribosomal protein L20 	LOC_Os10g21314.1	"chloroplast 50S ribosomal protein L20, putative"	Medtr4g042390.1	Ribosomal protein L20 	NA	NA	NA
PtpAffx.222091.1.S1_x_at	E	E	pmrna39304	pmrna39304	NA	NA	Q14FD4	"50S ribosomal protein L20, chloroplastic"	ATCG00660.1	ribosomal protein L20 	LOC_Os10g21314.1	"chloroplast 50S ribosomal protein L20, putative"	Medtr4g042390.1	Ribosomal protein L20 	NA	NA	NA
PtpAffx.222092.1.S1_s_at	E	E	pmrna39305	pmrna39305	NA	NA	A4GYT3	"30S ribosomal protein S18, chloroplastic"	ATCG00650.1	ribosomal protein S18 	LOC_Os10g21312.1	"chloroplast 30S ribosomal protein S18, putative"	Medtr4g042380.1	Ribosomal protein S18 	NA	NA	NA
PtpAffx.222093.1.S1_at	E	E	pmrna39307	pmrna39307	NA	NA	Q04716	"Ribosomal protein S3, mitochondrial"	ATMG00090.1	structural constituent of ribosome;protein binding 	LOC_Os12g34124.1	"mitochondrial ribosomal protein S3, putative"	Medtr1g005830.1	"Ribosomal protein S3, N-terminal "	NA	NA	NA
PtpAffx.222094.1.S1_s_at	E	E	pmrna39308	pmrna39308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222102.1.S1_s_at	E	E	pmrna39320	pmrna39320	NA	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT1G03940.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g57480.1	"transferase family protein, putative, expressed"	Medtr2g102870.1	"Anthocyanin 5-aromatic acyltransferase, related "	NA	NA	NA
PtpAffx.222113.1.S1_at	E	E	pmrna39337	pmrna39337	NA	NA	A4GYQ0	DNA-directed RNA polymerase subunit beta	ATCG00190.1	RNA polymerase subunit beta 	LOC_Os04g16820.1	"DNA-directed RNA polymerase subunit beta, putative, expressed"	Medtr4g042440.1	"RNA polymerase Rpb2, domain 2 "	NA	NA	NA
PtpAffx.222117.1.S1_s_at	E	E	pmrna39344	pmrna39344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222118.1.S1_at	E	E	pmrna39345	pmrna39345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222119.1.S1_at	E	E	pmrna39346	pmrna39346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222120.1.S1_at	E	E	pmrna39347	pmrna39347	NA	NA	Q04647	Probable cytochrome c biosynthesis protein	ATMG00830.1	cytochrome C biogenesis 382 	NA	NA	Medtr1g006050.1	Cytochrome c assembly protein 	NA	NA	NA
PtpAffx.222121.1.S1_at	E	E	pmrna39348	pmrna39348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222122.1.S1_at	E	E	pmrna39349	pmrna39349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222130.1.S1_at	E	E	pmrna39359	pmrna39359	NA	NA	O35115	Four and a half LIM domains protein 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222131.1.S1_at	E	E	pmrna39360	pmrna39360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222136.1.S1_at	E	E	pmrna39367	pmrna39367	NA	NA	NA	NA	AT1G73750.1	"Uncharacterised conserved protein UCP031088, alpha/beta hydrolase "	LOC_Os01g49760.1	expressed protein	Medtr8g096230.1	"Peptidase S9, serine active site "	NA	NA	NA
PtpAffx.222139.1.S1_at	E	E	pmrna39372	pmrna39372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222150.1.S1_at	E	E	pmrna39391	pmrna39391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222151.1.S1_at	E	E	pmrna39392	pmrna39392	NA	NA	Q95748	NADH-ubiquinone oxidoreductase 27 kDa subunit	ATMG00070.1	NADH dehydrogenase subunit 9 	NA	NA	Medtr1g005930.1	"NADH dehydrogenase (ubiquinone), 30 kDa subunit "	NA	NA	NA
PtpAffx.222152.1.S1_at	E	E	pmrna39393	pmrna39393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222153.1.S1_at	E	E	pmrna39394	pmrna39394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222154.1.S1_at	E	E	pmrna39395	pmrna39395	scaffold_11:2867064-2867193(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222155.1.S1_at	E	E	pmrna39396	pmrna39396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222163.1.S1_at	E	E	pmrna39407	pmrna39407	scaffold_12:9990744-9990954(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222172.1.S1_at	E	E	pmrna39420	pmrna39420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222180.1.S1_at	E	E	pmrna39431	pmrna39431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222188.1.S1_at	E	E	pmrna39441	pmrna39441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222189.1.S1_at	E	E	pmrna39442	pmrna39442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222209.1.S1_x_at	E	E	pmrna39471	pmrna39471	scaffold_17:5338120-5338642(-) (11)	NA	NA	NA	AT3G21000.1	Gag-Pol-related retrotransposon family protein 	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.222226.1.S1_at	E	E	pmrna39501	pmrna39501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222232.1.S1_at	E	E	pmrna39512	pmrna39512	scaffold_17:4976430-4976928(+) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT5G61090.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os06g46960.1	"nucleic acid binding protein, putative"	Medtr1g010300.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.222233.1.S1_at	E	E	pmrna39513	pmrna39513	scaffold_17:4973898-4974537(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222242.1.S1_at	E	E	pmrna39528	pmrna39528	scaffold_17:4886059-4886336(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222268.1.S1_at	E	E	pmrna39569	pmrna39569	NA	NA	Q39008	Mitogen-activated protein kinase kinase kinase 1	AT4G08500.1	MAPK/ERK kinase kinase 1 	LOC_Os03g49640.2	"STE_MEKK_ste11_MAP3K.14 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g098410.1	Protein kinase 	NA	NA	NA
PtpAffx.222268.1.S1_x_at	E	E	pmrna39569	pmrna39569	NA	NA	Q39008	Mitogen-activated protein kinase kinase kinase 1	AT4G08500.1	MAPK/ERK kinase kinase 1 	LOC_Os03g49640.2	"STE_MEKK_ste11_MAP3K.14 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g098410.1	Protein kinase 	NA	NA	NA
PtpAffx.222294.1.S1_x_at	E	E	pmrna39611	pmrna39611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222328.1.S1_at	E	E	pmrna39660	pmrna39660	scaffold_17:3613770-3615989(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222332.1.S1_at	E	E	pmrna39674	pmrna39674	scaffold_17:3471403-3471438(+) (11)	NA	Q9ZWA1	Zinc finger CCCH domain-containing protein 2	AT1G03790.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os01g09620.2	"zinc finger/CCCH transcription factor, putative, expressed"	Medtr4g108400.1	"Zinc finger, CCCH-type "	NA	NA	NA
PtpAffx.222343.1.S1_at	E	E	pmrna39691	pmrna39691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222346.1.S1_at	E	E	pmrna39694	pmrna39694	NA	NA	O22775	Putative glycosyltransferase 2	AT4G02500.1	UDP-xylosyltransferase 2 	LOC_Os03g18820.2	"glycosyltransferase, putative, expressed"	Medtr7g130450.1	Galactosyl transferase 	NA	NA	NA
PtpAffx.222350.1.S1_s_at	E	E	pmrna39699	pmrna39699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222352.1.S1_at	E	E	pmrna39701	pmrna39701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222353.1.S1_s_at	E	E	pmrna39702	pmrna39702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222365.1.S1_at	E	E	pmrna39718	pmrna39718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222380.1.S1_at	E	E	pmrna39738	pmrna39738	NA	NA	Q08597	Nitrogen assimilation regulatory protein nac	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222384.1.S1_at	E	E	pmrna39745	pmrna39745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222385.1.S1_at	E	E	pmrna39746	pmrna39746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222397.1.S1_at	E	E	pmrna39766	pmrna39766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222399.1.S1_at	E	E	pmrna39768	pmrna39768	scaffold_3:15137980-15138079(+) (11)	NA	NA	NA	AT1G66170.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os09g27620.1	"PHD-finger domain containing protein, putative"	Medtr5g085540.1	"Calcium-binding EF-hand; Zinc finger, FYVE/PHD-type "	NA	NA	NA
PtpAffx.222399.1.S1_s_at	E	E	pmrna39768	pmrna39768	NA	NA	NA	NA	AT1G66170.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os09g27620.1	"PHD-finger domain containing protein, putative"	Medtr5g085540.1	"Calcium-binding EF-hand; Zinc finger, FYVE/PHD-type "	NA	NA	NA
PtpAffx.222423.1.S1_at	E	E	pmrna39816	pmrna39816	scaffold_4:19699477-19699945(-) (11)	NA	NA	NA	AT3G22220.2	hAT transposon superfamily 	LOC_Os01g28200.1	"transposon protein, putative, unclassified"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
PtpAffx.222471.1.S1_at	E	E	pmrna39903	pmrna39903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222477.1.S1_at	E	E	pmrna39924	pmrna39924	NA	NA	Q8LDS2	Probable xyloglucan endotransglucosylase/hydrolase protein 27	AT2G01850.1	endoxyloglucan transferase A3 	LOC_Os10g02770.1	"glycosyl hydrolases family 16, putative, expressed"	CU633465_9.2	Concanavalin A-like lectin/glucanase CU633465.7 82577-84656 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.222511.1.S1_at	E	E	pmrna39992	pmrna39992	NA	NA	Q9SAR5	Ankyrin repeat domain-containing protein 2	AT2G17390.1	ankyrin repeat-containing 2B 	LOC_Os03g63480.1	"ankyrin repeat domain containing protein, expressed"	Medtr3g154100.1	"Ankyrin repeat domain-containing protein 2, related "	NA	NA	NA
PtpAffx.222528.1.S1_at	E	E	pmrna40030	pmrna40030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222539.1.S1_at	E	E	pmrna40045	pmrna40045	scaffold_12:11560035-11560179(-) (11)//scaffold_999:4560-4704(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222554.1.S1_at	E	E	pmrna40069	pmrna40069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222555.1.S1_at	E	E	pmrna40070	pmrna40070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222556.1.S1_at	E	E	pmrna40071	pmrna40071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222557.1.S1_at	E	E	pmrna40072	pmrna40072	NA	NA	P20315	DNA primase/helicase	AT1G30680.1	toprim domain-containing protein 	LOC_Os06g45980.1	"toprim domain-containing protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.222558.1.S1_at	E	E	pmrna40073	pmrna40073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222559.1.S1_at	E	E	pmrna40074	pmrna40074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222560.1.S1_at	E	E	pmrna40075	pmrna40075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222561.1.S1_at	E	E	pmrna40076	pmrna40076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222562.1.S1_at	E	E	pmrna40077	pmrna40077	NA	NA	P49859	Portal protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222563.1.S1_at	E	E	pmrna40078	pmrna40078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222564.1.S1_at	E	E	pmrna40079	pmrna40079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222565.1.S1_at	E	E	pmrna40080	pmrna40080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222566.1.S1_at	E	E	pmrna40081	pmrna40081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222567.1.S1_at	E	E	pmrna40082	pmrna40082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222568.1.S1_at	E	E	pmrna40083	pmrna40083	NA	NA	P85501	Structural protein 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222569.1.S1_at	E	E	pmrna40084	pmrna40084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222586.1.S1_at	E	E	pmrna40115	pmrna40115	NA	NA	Q51697	Isoquinoline 1-oxidoreductase subunit alpha	AT4G34890.1	xanthine dehydrogenase 1 	LOC_Os03g31550.1	"aldehyde oxidase, putative, expressed"	Medtr2g117560.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	NA	NA	NA
PtpAffx.222587.1.S1_at	E	E	pmrna40116	pmrna40116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222589.1.S1_a_at	E	E	pmrna40119	pmrna40119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222589.1.S1_at	E	E	pmrna40119	pmrna40119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222600.1.S1_at	E	E	pmrna40132	pmrna40132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222601.1.S1_at	E	E	pmrna40133	pmrna40133	NA	NA	P34750	Fimbrial assembly protein pilQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222606.1.S1_x_at	E	E	pmrna40142	pmrna40142	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.222612.1.S1_at	E	E	pmrna40149	pmrna40149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222620.1.S1_at	E	E	pmrna40158	pmrna40158	NA	NA	P76121	Uncharacterized protein yddH	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222626.1.S1_at	E	E	pmrna40167	pmrna40167	scaffold_4:1156575-1156927(-) (11)	NA	NA	NA	NA	NA	LOC_Os10g01750.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.222629.1.S1_at	E	E	pmrna40172	pmrna40172	NA	NA	Q9BSD7	Nucleoside-triphosphatase C1orf57	AT5G66005.3	Expressed protein 	NA	NA	Medtr5g024190.1	AAA ATPase 	NA	NA	NA
PtpAffx.222653.1.S1_at	E	E	pmrna40200	pmrna40200	scaffold_4:584190-584327(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222653.1.S1_x_at	E	E	pmrna40200	pmrna40200	scaffold_4:584190-584335(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222675.1.S1_at	E	E	pmrna40230	pmrna40230	scaffold_5:3952277-3952479(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222800.1.S1_x_at	E	E	pmrna40460	pmrna40460	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.222811.1.S1_at	E	E	pmrna40479	pmrna40479	NA	NA	P95231	Serine acetyltransferase	AT1G55920.1	serine acetyltransferase 2;1 	LOC_Os03g10050.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g103050.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	NA	NA	NA
PtpAffx.222815.1.S1_at	E	E	pmrna40483	pmrna40483	scaffold_15:12742432-12742924(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222819.1.S1_at	E	E	pmrna40487	pmrna40487	scaffold_53:132034-132638(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222824.1.S1_at	E	E	pmrna40495	pmrna40495	NA	NA	Q9SJZ3	"Pentatricopeptide repeat-containing protein At2g22410, mitochondrial"	AT2G22410.1	SLOW GROWTH 1 	LOC_Os12g13110.1	"pentatricopeptide, putative, expressed"	AC234702_5.1	Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.222826.1.S1_x_at	E	E	pmrna40497	pmrna40497	scaffold_8:17799210-17799463(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222827.1.S1_x_at	E	E	pmrna40498	pmrna40498	scaffold_19:6860728-6861036(+) (10)//scaffold_8:17798705-17799019(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222828.1.S1_at	E	E	pmrna40501	pmrna40501	NA	NA	Q6UDF0	Mannan synthase 1	NA	NA	NA	NA	Medtr1g073500.1	"Glycosyl transferase, family 2 "	NA	NA	NA
PtpAffx.222828.1.S1_x_at	E	E	pmrna40501	pmrna40501	NA	NA	Q6UDF0	Mannan synthase 1	NA	NA	NA	NA	Medtr1g073500.1	"Glycosyl transferase, family 2 "	NA	NA	NA
PtpAffx.222832.1.S1_at	E	E	pmrna40507	pmrna40507	scaffold_35:188904-189209(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222837.1.S1_at	E	E	pmrna40512	pmrna40512	NA	NA	Q60HD0	"Sulfite oxidase, mitochondrial"	AT3G01910.1	sulfite oxidase 	LOC_Os08g41830.1	"sulfite oxidase, putative, expressed"	Medtr3g098350.1	Mo-co oxidoreductase dimerisation domain 	NA	NA	NA
PtpAffx.222838.1.S1_at	E	E	pmrna40513	pmrna40513	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222842.1.S1_at	E	E	pmrna40520	pmrna40520	scaffold_15:7043238-7043586(-) (9)//scaffold_15:7093993-7094341(-) (9)//scaffold_17:13396403-13396751(-) (10)//scaffold_2:17093554-17093902(-) (11)//scaffold_3:5381757-5382105(+) (11)//scaffold_32:266509-266858(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222843.1.S1_at	E	E	pmrna40521	pmrna40521	scaffold_2999:970-1111(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222866.1.S1_at	E	E	pmrna40560	pmrna40560	NA	NA	Q48815	Protein helA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222867.1.S1_at	E	E	pmrna40561	pmrna40561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222887.1.S1_at	E	E	pmrna40599	pmrna40599	NA	NA	P03877	Intron-encoded DNA endonuclease aI3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222889.1.S1_at	E	E	pmrna40603	pmrna40603	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020950.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	NA	NA	NA
PtpAffx.222902.1.S1_at	E	E	pmrna40619	pmrna40619	NA	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222904.1.S1_at	E	E	pmrna40623	pmrna40623	NA	NA	NA	NA	AT5G55830.1	Concanavalin A-like lectin protein kinase family protein 	NA	NA	Medtr3g009180.1	Protein kinase; Concanavalin A-like lectin/glucanase 	NA	NA	NA
PtpAffx.222909.1.S1_at	E	E	pmrna40632	pmrna40632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222910.1.S1_at	E	E	pmrna40634	pmrna40634	NA	NA	NA	NA	NA	NA	NA	NA	Medtr6g013390.1	"Mitochondrial ribosomal protein S1, related "	NA	NA	NA
PtpAffx.222931.1.S1_x_at	E	E	pmrna40661	pmrna40661	NA	NA	NA	NA	NA	NA	LOC_Os10g21350.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.222943.1.S1_at	E	E	pmrna40677	pmrna40677	NA	NA	Q04064	Outer membrane porin protein BP0840	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222944.1.S1_at	E	E	pmrna40678	pmrna40678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222948.1.S1_x_at	E	E	pmrna40683	pmrna40683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222954.1.S1_at	E	E	pmrna40690	pmrna40690	NA	NA	Q0JC27	Protein NLP2	AT3G59580.2	Plant regulator RWP-RK family protein 	LOC_Os04g41850.1	"NIN, putative, expressed"	Medtr2g120530.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	NA	NA	NA
PtpAffx.222959.1.S1_at	E	E	pmrna40697	pmrna40697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222968.1.S1_at	E	E	pmrna40710	pmrna40710	scaffold_8:17885401-17885993(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g04680.1	"retrotransposon protein, putative, unclassified"	Medtr6g080700.1	"Putative non-LTR retroelement reverse transcriptase, related, "	NA	NA	NA
PtpAffx.222973.1.S1_at	E	E	pmrna40719	pmrna40719	scaffold_8:18135780-18136804(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222984.1.S1_at	E	E	pmrna40738	pmrna40738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222986.1.S1_at	E	E	pmrna40742	pmrna40742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222996.1.S1_at	E	E	pmrna40764	pmrna40764	scaffold_666:10080-10644(+) (11)//scaffold_8:16969145-16969709(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g084160.1	Ribonuclease H 	NA	NA	NA
PtpAffx.222998.1.S1_at	E	E	pmrna40769	pmrna40769	scaffold_8:16891648-16892054(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222998.1.S1_x_at	E	E	pmrna40769	pmrna40769	scaffold_8:16891648-16892054(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222999.1.S1_at	E	E	pmrna40771	pmrna40771	scaffold_8:16796465-16796639(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223005.1.S1_at	E	E	pmrna40779	pmrna40779	NA	NA	Q0H8X4	Cytochrome c oxidase subunit 3	ATMG00730.1	cytochrome c oxidase subunit 3 	NA	NA	Medtr1g005240.1	"Cytochrome c oxidase, subunit III; H+-transporting two-sector ATPase, A subunit "	NA	NA	NA
PtpAffx.223019.1.S1_at	E	E	pmrna40799	pmrna40799	NA	NA	NA	NA	NA	NA	LOC_Os08g10770.1	"retrotransposon protein, putative, unclassified"	AC233082_3.1	"RNA-directed DNA polymerase (Reverse transcriptase); Peptidase aspartic, active site; Retrotransposon gag protein AC233082.3 19216-16757 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.223023.1.S1_at	E	E	pmrna40807	pmrna40807	NA	NA	Q38959	"Pentatricopeptide repeat-containing protein At3g26630, chloroplastic"	AT3G26630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g15090.1	"diacylglycerol kinase catalytic domain family protein, expressed"	Medtr7g099640.1	Asp/Glu racemase 	NA	NA	NA
PtpAffx.223025.1.S1_at	E	E	pmrna40809	pmrna40809	NA	NA	NA	NA	AT5G15540.2	PHD finger family protein 	NA	NA	AC231342_23.1	"Zinc finger, FYVE/PHD-type AC231342.3 105368-115322 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.223026.1.S1_at	E	E	pmrna40811	pmrna40811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223028.1.S1_s_at	E	E	pmrna40815	pmrna40815	scaffold_1477:5808-5974(-) (9)//scaffold_2867:1-310(+) (9)//scaffold_2867:209-518(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223049.1.S1_at	E	E	pmrna40841	pmrna40841	scaffold_13:3514782-3514967(+) (11)//scaffold_14:4612811-4612903(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223049.1.S1_x_at	E	E	pmrna40841	pmrna40841	scaffold_13:3514782-3514967(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223052.1.S1_at	E	E	pmrna40844	pmrna40844	NA	NA	Q0H8Y0	Probable intron-encoded endonuclease aI4	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223054.1.S1_at	E	E	pmrna40847	pmrna40847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223055.1.S1_at	E	E	pmrna40848	pmrna40848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223059.1.S1_at	E	E	pmrna40854	pmrna40854	NA	NA	O42287	Intersectin-1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223062.1.S1_at	E	E	pmrna40858	pmrna40858	NA	NA	Q9YFM7	Methylisocitrate lyase	AT1G21440.1	Phosphoenolpyruvate carboxylase family protein 	LOC_Os04g42580.1	"carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed"	Medtr7g005900.1	Isocitrate lyase and phosphorylmutase; 	NA	NA	NA
PtpAffx.223063.1.S1_at	E	E	pmrna40859	pmrna40859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223070.1.S1_at	E	E	pmrna40870	pmrna40870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223075.1.S1_at	E	E	pmrna40880	pmrna40880	NA	NA	Q21W48	GMP synthase [glutamine-hydrolyzing]	AT1G63660.1	"GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative "	LOC_Os08g23730.1	"class I glutamine amidotransferase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.223076.1.S1_at	E	E	pmrna40881	pmrna40881	NA	NA	Q12179	Uncharacterized protein YPL245W	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223079.1.S1_at	E	E	pmrna40887	pmrna40887	NA	NA	O31038	FMN reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223084.1.S1_at	E	E	pmrna40894	pmrna40894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223095.1.S1_at	E	E	pmrna40912	pmrna40912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223097.1.S1_x_at	E	E	pmrna40915	pmrna40915	scaffold_1:21959359-21959417(-) (9)//scaffold_10:1994091-1994182(+) (10)//scaffold_10:9119248-9119339(+) (10)//scaffold_11:3908075-3908191(-) (11)//scaffold_1152:3609-3700(+) (9)//scaffold_12:1293277-1293368(+) (9)//scaffold_14:4039364-4039455(+) (9)//scaffold_17:1711506-1711597(-) (9)//scaffold_17:7943433-7943524(+) (9)//scaffold_178:22543-22634(-) (9)//scaffold_18:3679348-3679439(+) (10)//scaffold_18:10385125-10385216(+) (10)//scaffold_19:14692406-14692497(+) (10)//scaffold_4:1429405-1429496(-) (9)//scaffold_5:2904103-2904194(+) (9)//scaffold_6:17595474-17595565(-) (10)//scaffold_60:36220-36311(-) (10)//scaffold_739:7634-12529(-) (10)//scaffold_8:426426-426517(+) (10)//scaffold_9:10777842-10777933(-) (10)	NA	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94	NA	NA	LOC_Os09g01570.1	"retrotransposon protein, putative, Ty1-copia subclass"	NA	NA	NA	NA	NA
PtpAffx.223128.1.S1_at	E	E	pmrna40975	pmrna40975	scaffold_15:7235810-7236392(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223130.1.S1_at	E	E	pmrna40978	pmrna40978	scaffold_15:7171881-7172453(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223150.1.S1_x_at	E	E	pmrna41009	pmrna41009	scaffold_1:42125456-42125491(-) (10)//scaffold_10:3799979-3800014(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223151.1.S1_x_at	E	E	pmrna41010	pmrna41010	scaffold_10:3793956-3795352(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223154.1.S1_at	E	E	pmrna41014	pmrna41014	scaffold_1:22661939-22662172(+) (9)//scaffold_1:48194448-48194681(+) (11)//scaffold_1:48202032-48202265(+) (9)//scaffold_1271:14-247(-) (10)//scaffold_13:2205506-2205742(+) (11)//scaffold_15:2634902-2635135(+) (10)//scaffold_17:3201630-3201863(-) (11)//scaffold_19:3206961-3207312(+) (11)//scaffold_19:3207079-3215024(+) (9)//scaffold_19:13899720-13899956(+) (11)//scaffold_2:10962936-10963169(-) (11)//scaffold_403:3675-3908(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223155.1.S1_at	E	E	pmrna41015	pmrna41015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223157.1.S1_at	E	E	pmrna41019	pmrna41019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223168.1.S1_at	E	E	pmrna41039	pmrna41039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223173.1.S1_at	E	E	pmrna41046	pmrna41046	NA	NA	NA	NA	AT1G73050.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os10g38050.1	"HOTHEAD precursor, putative, expressed"	Medtr4g023240.1	Alcohol oxidase 	NA	NA	NA
PtpAffx.223176.1.S1_at	E	E	pmrna41049	pmrna41049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223195.1.S1_at	E	E	pmrna41070	pmrna41070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223211.1.S1_at	E	E	pmrna41088	pmrna41088	NA	NA	P35620	Flagellar biosynthesis protein flhA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223218.1.S1_at	E	E	pmrna41095	pmrna41095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223226.1.S1_s_at	E	E	pmrna41107	pmrna41107	NA	NA	NA	NA	AT1G30680.1	toprim domain-containing protein 	LOC_Os06g45980.1	"toprim domain-containing protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.223243.1.S1_at	E	E	pmrna41135	pmrna41135	scaffold_4:21951871-21952044(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223255.1.S1_at	E	E	pmrna41158	pmrna41158	scaffold_4:22115773-22116826(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223299.1.S1_at	E	E	pmrna41224	pmrna41224	NA	NA	NA	NA	NA	NA	LOC_Os01g73320.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr6g077370.1	"Zinc finger, CCHC-type; Retrotransposon gag protein "	NA	NA	NA
PtpAffx.223316.1.S1_s_at	E	E	pmrna41248	pmrna41248	scaffold_4:22922440-22923018(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223347.1.S1_at	E	E	pmrna41293	pmrna41293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223349.1.S1_at	E	E	pmrna41297	pmrna41297	scaffold_821:8184-8688(-) (11)	NA	Q94AA4	6-phosphofructokinase 3	AT4G26270.1	phosphofructokinase 3 	LOC_Os01g09570.1	"6-phosphofructokinase, putative, expressed"	Medtr4g160270.2	Phosphofructokinase 	NA	NA	NA
PtpAffx.223379.1.S1_at	E	E	pmrna41348	pmrna41348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223389.1.S1_at	E	E	pmrna41367	pmrna41367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223392.1.S1_at	E	E	pmrna41370	pmrna41370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223400.1.S1_at	E	E	pmrna41383	pmrna41383	NA	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78860.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23720.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	NA	NA
PtpAffx.223401.1.S1_at	E	E	pmrna41384	pmrna41384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223407.1.S1_at	E	E	pmrna41393	pmrna41393	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g127100.4	"CTV.22, related "	NA	NA	NA
PtpAffx.223414.1.S1_at	E	E	pmrna41405	pmrna41405	scaffold_17:7063913-7064475(-) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT5G61090.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os06g46960.1	"nucleic acid binding protein, putative"	Medtr1g010300.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.223452.1.S1_at	E	E	pmrna41473	pmrna41473	scaffold_17:8444321-8444944(+) (10)	NA	NA	NA	NA	NA	LOC_Os05g33490.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr3g061750.1	"polyprotein, related "	NA	NA	NA
PtpAffx.223453.1.S1_at	E	E	pmrna41474	pmrna41474	scaffold_17:8448953-8449080(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223453.1.S1_x_at	E	E	pmrna41474	pmrna41474	scaffold_17:8448915-8449080(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223457.1.S1_at	E	E	pmrna41479	pmrna41479	scaffold_17:8552918-8553157(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223462.1.S1_a_at	E	E	pmrna41487	pmrna41487	scaffold_17:8682858-8683614(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223462.1.S1_x_at	E	E	pmrna41487	pmrna41487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223464.1.S1_at	E	E	pmrna41490	pmrna41490	scaffold_17:8703309-8703351(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223465.1.S1_at	E	E	pmrna41491	pmrna41491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223492.1.S1_at	E	E	pmrna41523	pmrna41523	NA	NA	P13632	C4-dicarboxylate transport transcriptional regulatory protein dctD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223499.1.S1_at	E	E	pmrna41538	pmrna41538	scaffold_19:3082107-3082255(+) (11)	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	AC225526_3.1	NB-ARC; AAA ATPase AC225526.7 19758-13755 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.223519.1.S1_at	E	E	pmrna41559	pmrna41559	NA	NA	Q9LXN3	Probable fatty acyl-CoA reductase 4	AT3G44540.2	fatty acid reductase 4 	LOC_Os08g20200.2	"male sterility protein, putative, expressed"	Medtr4g072240.1	Male sterility protein 	NA	NA	NA
PtpAffx.223520.1.S1_at	E	E	pmrna41560	pmrna41560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223521.1.S1_x_at	E	E	pmrna41561	pmrna41561	NA	NA	Q4L9P0	Serine-rich adhesin for platelets	NA	NA	LOC_Os01g52690.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	NA	NA	NA
PtpAffx.223532.1.S1_at	E	E	pmrna41581	pmrna41581	NA	NA	P39410	Uncharacterized protein yjjJ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223540.1.S1_at	E	E	pmrna41591	pmrna41591	scaffold_1:43818546-43818677(+) (11)//scaffold_1:45323843-45323972(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223544.1.S1_at	E	E	pmrna41597	pmrna41597	NA	NA	O22265	"Signal recognition particle 43 kDa protein, chloroplastic"	AT2G47450.1	chloroplast signal recognition particle component (CAO) 	LOC_Os03g03990.1	"signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.223550.1.S1_at	E	E	pmrna41603	pmrna41603	NA	NA	P54719	Uncharacterized ABC transporter ATP-binding protein yfiC	AT5G03910.1	ABC2 homolog 12 	LOC_Os06g03770.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g083810.1	Cyclic peptide transporter 	NA	NA	NA
PtpAffx.223576.1.S1_at	E	E	pmrna41634	pmrna41634	NA	NA	P25539	Riboflavin biosynthesis protein ribD	AT3G47390.2	cytidine/deoxycytidylate deaminase family protein 	NA	NA	Medtr7g089780.1	"CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal; Conserved hypothetical protein CHP02464 "	NA	NA	NA
PtpAffx.223583.1.S1_at	E	E	pmrna41643	pmrna41643	NA	NA	P0AG43	Riboflavin biosynthesis protein ribF	NA	NA	LOC_Os07g07480.1	"HNH endonuclease domain-containing protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.223584.1.S1_at	E	E	pmrna41644	pmrna41644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223587.1.S1_at	E	E	pmrna41648	pmrna41648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223588.1.S1_at	E	E	pmrna41649	pmrna41649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223603.1.S1_at	E	E	pmrna41671	pmrna41671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223608.1.S1_at	E	E	pmrna41676	pmrna41676	NA	NA	A9BMK7	Phosphoglucosamine mutase	AT1G70820.1	"phosphoglucomutase, putative / glucose phosphomutase, putative "	LOC_Os07g26610.2	"phosphoglucomutase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.223609.1.S1_at	E	E	pmrna41677	pmrna41677	NA	NA	P43776	Dihydropteroate synthase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223611.1.S1_s_at	E	E	pmrna41681	pmrna41681	scaffold_2:2183035-2183565(-) (11)//scaffold_3:19867706-19868237(+) (9)	NA	NA	NA	NA	NA	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	Medtr5g048830.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.223612.1.S1_at	E	E	pmrna41682	pmrna41682	NA	NA	Q8RVB2	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	AT3G11540.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44510.1	"UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	NA	NA	NA
PtpAffx.223616.1.S1_at	E	E	pmrna41686	pmrna41686	NA	NA	B2U804	Phosphoenolpyruvate carboxykinase [GTP]	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223617.1.S1_at	E	E	pmrna41687	pmrna41687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223625.1.S1_at	E	E	pmrna41700	pmrna41700	scaffold_217:13323-13396(-) (11)//scaffold_4:9461665-9461738(-) (11)	NA	NA	NA	AT3G02350.1	galacturonosyltransferase 9 	NA	NA	AC146721_10.1	"Glycosyl transferase, family 8 AC146721.7 49734-45961 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.223627.1.S1_at	E	E	pmrna41706	pmrna41706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223630.1.S1_at	E	E	pmrna41709	pmrna41709	scaffold_19:2838887-2839160(-) (9)//scaffold_2426:1371-1694(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g24730.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.223630.1.S1_s_at	E	E	pmrna41709	pmrna41709	scaffold_1:4646937-4647357(+) (9)//scaffold_1:11399641-11400059(-) (10)//scaffold_11:11012-11432(-) (10)//scaffold_14:2937199-2937616(+) (10)//scaffold_17:5565399-5565804(-) (9)//scaffold_19:2314214-2314632(+) (11)//scaffold_2426:1424-1842(-) (10)//scaffold_59:70789-71207(-) (10)//scaffold_7:5729779-5730197(+) (10)	NA	NA	NA	NA	NA	LOC_Os02g24730.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.223636.1.S1_at	E	E	pmrna41720	pmrna41720	scaffold_418:4551-4697(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223639.1.S1_s_at	E	E	pmrna41726	pmrna41726	scaffold_10:2399127-2399847(-) (11)//scaffold_10:2399473-2399745(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223657.1.S1_at	E	E	pmrna41760	pmrna41760	scaffold_1:18870184-18870332(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223671.1.S1_at	E	E	pmrna41788	pmrna41788	scaffold_1:18169917-18170565(+) (10)//scaffold_16:12617377-12618025(+) (10)//scaffold_4:3522595-3523243(+) (10)//scaffold_468:5956-6595(+) (9)	NA	NA	NA	AT5G48050.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os07g16750.1	"retrotransposon protein, putative, unclassified"	Medtr4g079130.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.223701.1.S1_at	E	E	pmrna41835	pmrna41835	scaffold_17:2655550-2655683(-) (11)//scaffold_8:12847158-12847291(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223703.1.S1_at	E	E	pmrna41838	pmrna41838	NA	NA	Q70LM5	Linear gramicidin synthase subunit C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223709.1.S1_at	E	E	pmrna41848	pmrna41848	scaffold_18:6121112-6121265(+) (10)	NA	NA	NA	NA	NA	LOC_Os08g21960.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	NA	NA	NA
PtpAffx.223710.1.S1_at	E	E	pmrna41849	pmrna41849	NA	NA	Q9WVE9	Intersectin-1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223728.1.S1_at	E	E	pmrna41877	pmrna41877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223741.1.S1_x_at	E	E	pmrna41899	pmrna41899	NA	NA	P0CD35	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043720.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.223744.1.S1_at	E	E	pmrna41902	pmrna41902	NA	NA	Q4LAM6	Maturase K	ATCG00040.1	maturase K 	NA	NA	Medtr3g043760.1	"Intron maturase, type II; Maturase-related, N-terminal "	NA	NA	NA
PtpAffx.223744.1.S1_x_at	E	E	pmrna41902	pmrna41902	NA	NA	Q4LAM6	Maturase K	ATCG00040.1	maturase K 	NA	NA	Medtr3g043760.1	"Intron maturase, type II; Maturase-related, N-terminal "	NA	NA	NA
PtpAffx.223765.1.S1_s_at	E	E	pmrna41929	pmrna41929	NA	NA	A4GYS3	Chloroplast envelope membrane protein	ATCG00530.1	CemA-like proton extrusion protein-related 	LOC_Os02g24598.1	"chloroplast envelope membrane protein, putative"	Medtr5g019440.1	CemA 	NA	NA	NA
PtpAffx.223766.1.S1_at	E	E	pmrna41930	pmrna41930	NA	NA	Q6KZ89	Undecaprenyl pyrophosphate synthase	AT5G58770.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os01g63830.1	"dehydrodolichyl diphosphate synthase, putative, expressed"	Medtr5g078680.1	Di-trans-poly-cis-decaprenylcistransferase 	NA	NA	NA
PtpAffx.223775.1.S1_at	E	E	pmrna41945	pmrna41945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223791.1.S1_at	E	E	pmrna41976	pmrna41976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223795.1.S1_s_at	E	E	pmrna41986	pmrna41986	scaffold_1:21512939-21513107(-) (11)//scaffold_352:17539-17707(+) (11)//scaffold_488:14727-14895(+) (11)	NA	Q652P9	Germin-like protein 9-3	AT1G10460.1	germin-like protein 7 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107640.1	"Cupin, RmlC-type "	NA	NA	NA
PtpAffx.223801.1.S1_at	E	E	pmrna41992	pmrna41992	scaffold_19:11808262-11818181(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223806.1.S1_at	E	E	pmrna42004	pmrna42004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223807.1.S1_at	E	E	pmrna42005	pmrna42005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223808.1.S1_at	E	E	pmrna42007	pmrna42007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223814.1.S1_at	E	E	pmrna42016	pmrna42016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223816.1.S1_a_at	E	E	pmrna42018	pmrna42018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223817.1.S1_at	E	E	pmrna42019	pmrna42019	NA	NA	Q51463	Flagellar M-ring protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223820.1.S1_at	E	E	pmrna42026	pmrna42026	NA	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT4G03470.1	Ankyrin repeat family protein 	LOC_Os05g35310.1	"ankyrin repeat family protein, putative"	Medtr5g093150.1	Ankyrin 	NA	NA	NA
PtpAffx.223822.1.S1_at	E	E	pmrna42030	pmrna42030	scaffold_1729:2066-2098(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223822.1.S1_x_at	E	E	pmrna42030	pmrna42030	scaffold_1729:1842-2098(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223825.1.S1_at	E	E	pmrna42036	pmrna42036	scaffold_19:2197294-2197763(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223828.1.S1_at	E	E	pmrna42039	pmrna42039	scaffold_5:24382174-24382544(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223829.1.S1_at	E	E	pmrna42040	pmrna42040	NA	NA	NA	NA	AT3G58480.1	calmodulin-binding family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.2	IQ calmodulin-binding region 	NA	NA	NA
PtpAffx.223830.1.S1_a_at	E	E	pmrna42043	pmrna42043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223830.1.S1_at	E	E	pmrna42043	pmrna42043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223830.1.S1_x_at	E	E	pmrna42043	pmrna42043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223845.1.S1_at	E	E	pmrna42064	pmrna42064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223863.1.S1_at	E	E	pmrna42083	pmrna42083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223868.1.S1_at	E	E	pmrna42088	pmrna42088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223873.1.S1_at	E	E	pmrna42093	pmrna42093	scaffold_2112:782-1111(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g036180.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	NA	NA
PtpAffx.223875.1.S1_x_at	E	E	pmrna42095	pmrna42095	scaffold_6:15488934-15500014(+) (11)//scaffold_6:15497799-15511418(+) (11)//scaffold_6:15504093-15522365(+) (10)//scaffold_6:15557758-15557791(+) (10)//scaffold_6:15558077-15558110(+) (10)//scaffold_6:15559644-15559677(+) (10)//scaffold_6:15560034-15560067(+) (10)//scaffold_6:15561030-15561063(+) (10)//scaffold_6:15561349-15561382(+) (10)//scaffold_6:15563834-15563867(+) (10)//scaffold_6:15564157-15564570(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223876.1.S1_at	E	E	pmrna42096	pmrna42096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223880.1.S1_x_at	E	E	pmrna42101	pmrna42101	scaffold_15:2379162-2387235(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223884.1.S1_x_at	E	E	pmrna42106	pmrna42106	scaffold_7:10321678-10321970(-) (9)//scaffold_8:14716623-14716861(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223886.1.S1_at	E	E	pmrna42108	pmrna42108	NA	NA	NA	NA	AT3G55470.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	NA	NA	Medtr5g087310.1	C2 	NA	NA	NA
PtpAffx.223892.1.S1_x_at	E	E	pmrna42114	pmrna42114	scaffold_2397:183-2487(-) (11)//scaffold_2397:535-2394(-) (9)//scaffold_3:5302350-5304125(-) (10)//scaffold_6:15317766-15321229(-) (11)//scaffold_6:15318469-15322919(-) (11)//scaffold_6:15319423-15326465(-) (11)//scaffold_6:15320098-15326473(-) (10)//scaffold_6:15320450-15321922(-) (9)//scaffold_6:15320731-15322908(-) (9)//scaffold_6:15321083-15323682(-) (9)//scaffold_6:15321786-15326454(-) (9)//scaffold_6:15322491-15326734(-) (9)//scaffold_6:15345412-15346343(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223893.1.S1_a_at	E	E	pmrna42115	pmrna42115	scaffold_3:11060969-11061037(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223893.1.S1_x_at	E	E	pmrna42115	pmrna42115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223895.1.S1_at	E	E	pmrna42117	pmrna42117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223897.1.S1_at	E	E	pmrna42119	pmrna42119	scaffold_1:47235593-47235874(-) (10)	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.223899.1.S1_at	E	E	pmrna42121	pmrna42121	scaffold_6:15559502-15559553(+) (11)//scaffold_6:15560888-15560939(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223899.1.S1_x_at	E	E	pmrna42121	pmrna42121	scaffold_6:15558863-15559553(+) (11)//scaffold_6:15559254-15560939(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223901.1.S1_at	E	E	pmrna42123	pmrna42123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223903.1.S1_x_at	E	E	pmrna42125	pmrna42125	scaffold_113:63863-64031(+) (11)//scaffold_373:2216-2383(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.223906.1.S1_at	E	E	pmrna42128	pmrna42128	scaffold_17:12123774-12125067(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223907.1.S1_at	E	E	pmrna42129	pmrna42129	scaffold_8:18515913-18516536(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223908.1.S1_at	E	E	pmrna42130	pmrna42130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223911.1.S1_s_at	E	E	pmrna42133	pmrna42133	scaffold_13:1398962-1401136(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223915.1.S1_at	E	E	pmrna42137	pmrna42137	NA	NA	P83589	Probable 3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223916.1.S1_x_at	E	E	pmrna42138	pmrna42138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223919.1.S1_at	E	E	pmrna42142	pmrna42142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223919.1.S1_x_at	E	E	pmrna42142	pmrna42142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223922.1.S1_at	E	E	pmrna42145	pmrna42145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223924.1.S1_at	E	E	pmrna42147	pmrna42147	scaffold_1:17518293-17518347(+) (9)//scaffold_1:17550718-17550772(+) (9)//scaffold_10:4427372-4427426(-) (9)//scaffold_10:4456308-4456362(-) (9)//scaffold_10:4469134-4469188(-) (9)//scaffold_10:4516792-4516846(+) (9)//scaffold_10:4583832-4583886(+) (9)//scaffold_10:4594480-4594534(-) (9)//scaffold_10:4629954-4630008(+) (9)//scaffold_10:4693107-4693161(+) (9)//scaffold_10:4724836-4724890(+) (9)//scaffold_10:4746253-4746307(+) (9)//scaffold_10:4832566-4832620(-) (9)//scaffold_10:4888282-4888336(+) (9)//scaffold_1079:2888-2942(+) (9)//scaffold_11:10167877-10167931(+) (9)//scaffold_12:6360883-6360937(-) (9)//scaffold_12:6560699-6560753(-) (9)//scaffold_12:12981828-12981882(+) (9)//scaffold_12:13023011-13023065(-) (9)//scaffold_12:13144748-13144802(+) (9)//scaffold_127:51150-51204(-) (9)//scaffold_13:11270675-11270729(+) (9)//scaffold_13:11530054-11530108(+) (9)//scaffold_14:15251011-15251065(+) (9)//scaffold_15:1784738-1784792(-) (9)//scaffold_15:1844677-1844731(+) (9)//scaffold_15:2016817-2016871(-) (9)//scaffold_15:2183111-2183165(+) (9)//scaffold_15:2197929-2197983(-) (9)//scaffold_15:2243898-2243952(-) (9)//scaffold_15:2302439-2302493(-) (9)//scaffold_152:71922-71976(-) (9)//scaffold_16:10045091-10045164(-) (10)//scaffold_16:10075807-10075861(+) (9)//scaffold_16:10219823-10219877(+) (9)//scaffold_18:8550599-8550653(+) (9)//scaffold_19:7970411-7970465(+) (9)//scaffold_19:8109720-8109774(+) (9)//scaffold_20:489756-489810(+) (9)//scaffold_23:341551-341605(-) (9)//scaffold_23:412468-412522(-) (9)//scaffold_24:369448-369502(+) (9)//scaffold_24:437791-437845(+) (9)//scaffold_28:38645-38699(-) (9)//scaffold_28:182231-182285(-) (9)//scaffold_28:237732-237786(-) (9)//scaffold_326:26477-26531(+) (9)//scaffold_37:79918-79972(+) (9)//scaffold_37:93273-93327(-) (9)//scaffold_4:12365229-12365283(-) (9)//scaffold_4:12438333-12438387(-) (9)//scaffold_4:12546477-12546531(+) (9)//scaffold_4:12634791-12634845(-) (9)//scaffold_4:12713427-12713481(-) (9)//scaffold_41:4878-4932(-) (9)//scaffold_41:14949-15003(-) (9)//scaffold_41:75157-75211(-) (9)//scaffold_447:7699-7753(-) (9)//scaffold_5:10026248-10026302(-) (9)//scaffold_5:10085950-10094706(-) (9)//scaffold_5:10113068-10113122(-) (9)//scaffold_5:10225657-10225711(+) (9)//scaffold_5:10276525-10276579(-) (9)//scaffold_5:25659471-25659525(-) (9)//scaffold_54:837-891(+) (9)//scaffold_55:63856-63910(+) (9)//scaffold_6:14884256-14884310(+) (9)//scaffold_6:14939879-14939933(+) (9)//scaffold_7:8082726-8082780(-) (9)//scaffold_7:8201339-8201393(-) (9)//scaffold_72:46698-46752(-) (9)//scaffold_72:60856-60910(-) (9)//scaffold_8:15756246-15756300(-) (9)//scaffold_8:16099044-16099098(+) (9)//scaffold_85:32594-32648(-) (9)//scaffold_9:402912-402966(+) (9)//scaffold_9:480819-480873(-) (9)	NA	NA	NA	AT1G40390.1	DNAse I-like superfamily protein 	LOC_Os11g05720.1	"retrotransposon protein, putative, unclassified"	Medtr8g034890.1	Endonuclease/exonuclease/phosphatase 	NA	NA	NA
PtpAffx.223931.1.S1_x_at	E	E	pmrna42155	pmrna42155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223936.1.S1_at	E	E	pmrna42161	pmrna42161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223939.1.S1_x_at	E	E	pmrna42164	pmrna42164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223941.1.S1_s_at	E	E	pmrna42166	pmrna42166	NA	NA	Q9NZ56	Formin-2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223943.1.S1_at	E	E	pmrna42168	pmrna42168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223945.1.S1_s_at	E	E	pmrna42170	pmrna42170	scaffold_10:1922071-1922231(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223945.1.S1_x_at	E	E	pmrna42170	pmrna42170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223946.1.S1_at	E	E	pmrna42171	pmrna42171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223952.1.S1_at	E	E	pmrna42178	pmrna42178	scaffold_5:24051569-24052087(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223954.1.S1_at	E	E	pmrna42180	pmrna42180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223955.1.S1_x_at	E	E	pmrna42181	pmrna42181	scaffold_13:10124835-10124872(+) (11)//scaffold_9:3539045-3539082(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223956.1.S1_x_at	E	E	pmrna42182	pmrna42182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223958.1.S1_at	E	E	pmrna42184	pmrna42184	scaffold_1:42144525-42144640(-) (11)//scaffold_1:48217159-48217274(-) (11)//scaffold_10:3794914-3795029(+) (11)//scaffold_112:51642-51757(+) (11)//scaffold_13:5163656-5163771(-) (9)//scaffold_6:21377642-21377757(-) (11)//scaffold_86:14862-14977(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223959.1.S1_at	E	E	pmrna42185	pmrna42185	scaffold_1:5746575-5747368(+) (9)//scaffold_316:835-1628(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223960.1.S1_s_at	E	E	pmrna42186	pmrna42186	scaffold_43:5464-5685(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223962.1.S1_a_at	E	E	pmrna42188	pmrna42188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223963.1.S1_x_at	E	E	pmrna42189	pmrna42189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223968.1.S1_x_at	E	E	pmrna42194	pmrna42194	scaffold_15:2379712-2385720(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223974.1.S1_x_at	E	E	pmrna42200	pmrna42200	scaffold_6:14667831-14667872(+) (10)//scaffold_6:15489555-15489596(+) (10)//scaffold_6:15491044-15491085(+) (10)//scaffold_6:15491434-15491475(+) (10)//scaffold_6:15491753-15495160(+) (10)//scaffold_6:15493666-15495479(+) (10)//scaffold_6:15495119-15495475(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223978.1.S1_at	E	E	pmrna42204	pmrna42204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223982.1.S1_at	E	E	pmrna42209	pmrna42209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223983.1.S1_at	E	E	pmrna42210	pmrna42210	scaffold_1:4593670-4593897(+) (11)//scaffold_739:1473-1700(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223986.1.S1_at	E	E	pmrna42213	pmrna42213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223987.1.S1_x_at	E	E	pmrna42214	pmrna42214	scaffold_19:8212533-8212778(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223988.1.S1_at	E	E	pmrna42215	pmrna42215	NA	NA	NA	NA	NA	NA	LOC_Os03g61660.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.223991.1.S1_at	E	E	pmrna42219	pmrna42219	scaffold_6:5830209-5831017(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223992.1.S1_at	E	E	pmrna42220	pmrna42220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223993.1.S1_x_at	E	E	pmrna42222	pmrna42222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223997.1.S1_at	E	E	pmrna42226	pmrna42226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224004.1.S1_at	E	E	pmrna42233	pmrna42233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224005.1.S1_s_at	E	E	pmrna42234	pmrna42234	scaffold_4:2987957-2988138(+) (11)//scaffold_4:22075889-22076070(+) (11)	NA	NA	NA	NA	NA	LOC_Os11g45010.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.224008.1.S1_at	E	E	pmrna42238	pmrna42238	scaffold_17:10753579-10753894(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224011.1.S1_at	E	E	pmrna42242	pmrna42242	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224017.1.S1_x_at	E	E	pmrna42249	pmrna42249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224018.1.S1_at	E	E	pmrna42250	pmrna42250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224027.1.S1_at	E	E	pmrna42259	pmrna42259	NA	NA	NA	NA	NA	NA	NA	NA	Medtr8g025790.1	"Zinc finger, CCCH-type; DNA-binding SAP "	NA	NA	NA
PtpAffx.224030.1.S1_x_at	E	E	pmrna42264	pmrna42264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224035.1.S1_at	E	E	pmrna42269	pmrna42269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224043.1.S1_at	E	E	pmrna42277	pmrna42277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224048.1.S1_at	E	E	pmrna42283	pmrna42283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224049.1.S1_x_at	E	E	pmrna42284	pmrna42284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224051.1.S1_x_at	E	E	pmrna42286	pmrna42286	scaffold_1:44297512-44297757(-) (9)//scaffold_10:9867498-9867722(+) (9)//scaffold_3:7777906-7778213(+) (11)//scaffold_4:16091837-16092079(+) (9)//scaffold_5:24818157-24818420(+) (9)//scaffold_6:8478394-8478624(+) (9)//scaffold_6:15908411-15908671(+) (9)//scaffold_7:12127138-12127383(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224053.1.S1_s_at	E	E	pmrna42288	pmrna42288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224056.1.S1_at	E	E	pmrna42291	pmrna42291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224057.1.S1_x_at	E	E	pmrna42292	pmrna42292	scaffold_1:17592368-17592646(+) (9)//scaffold_10:4806057-4806331(-) (10)//scaffold_1169:475-752(-) (9)//scaffold_12:12976810-12977088(+) (9)//scaffold_1304:2028-2161(-) (9)//scaffold_15:1878582-1878860(-) (10)//scaffold_17:9047446-9047724(-) (10)//scaffold_17:9449301-9449579(+) (10)//scaffold_17:9599583-9599777(+) (9)//scaffold_18:8295714-8295992(-) (9)//scaffold_2245:1398-1676(-) (9)//scaffold_26:123539-123817(-) (10)//scaffold_26:236276-236554(+) (10)//scaffold_26:349688-349882(+) (9)//scaffold_26:393605-393883(+) (11)//scaffold_2770:1522-1800(-) (10)//scaffold_326:33682-33875(-) (9)//scaffold_359:3218-3496(-) (10)//scaffold_5:25588086-25588364(-) (9)//scaffold_50:27459-27737(-) (9)//scaffold_54:35725-36003(-) (10)//scaffold_55:76224-76502(+) (9)//scaffold_6:15179705-15179978(+) (9)//scaffold_7:8242467-8242661(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224064.1.S1_at	E	E	pmrna42299	pmrna42299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224065.1.S1_at	E	E	pmrna42302	pmrna42302	scaffold_11:16389422-16389738(-) (11)//scaffold_1493:1743-2053(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224068.1.S1_at	E	E	pmrna42305	pmrna42305	scaffold_6:6791203-6791411(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224070.1.S1_a_at	E	E	pmrna42307	pmrna42307	scaffold_8:18384404-18384594(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224071.1.S1_at	E	E	pmrna42308	pmrna42308	NA	NA	O70277	Tripartite motif-containing protein 3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224072.1.S1_at	E	E	pmrna42309	pmrna42309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224073.1.S1_x_at	E	E	pmrna42310	pmrna42310	scaffold_1:5715827-5716196(-) (10)//scaffold_1:5730363-5730735(-) (11)//scaffold_1:43649138-43649510(-) (11)//scaffold_11:18285668-18286040(+) (11)//scaffold_13:11804197-11804569(+) (11)//scaffold_17:291886-292258(-) (11)//scaffold_17:5168813-5168894(-) (10)//scaffold_19:4054895-4054976(-) (10)//scaffold_5:668768-669140(+) (11)//scaffold_5:707473-707554(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224078.1.S1_at	E	E	pmrna42315	pmrna42315	scaffold_1:22313956-22314106(+) (11)//scaffold_323:14545-14679(+) (9)//scaffold_4:188109-188243(+) (9)//scaffold_5:8249701-8249851(+) (11)//scaffold_60:35-185(+) (9)	NA	NA	NA	NA	NA	LOC_Os12g44200.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.224080.1.S1_at	E	E	pmrna42317	pmrna42317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224083.1.S1_x_at	E	E	pmrna42320	pmrna42320	NA	NA	NA	NA	NA	NA	LOC_Os05g45550.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.224091.1.S1_at	E	E	pmrna42328	pmrna42328	scaffold_43:18303-18649(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224093.1.S1_at	E	E	pmrna42330	pmrna42330	scaffold_6:16158482-16158879(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224097.1.S1_at	E	E	pmrna42334	pmrna42334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224101.1.S1_at	E	E	pmrna42338	pmrna42338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224102.1.S1_at	E	E	pmrna42339	pmrna42339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224106.1.S1_at	E	E	pmrna42344	pmrna42344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224109.1.S1_at	E	E	pmrna42347	pmrna42347	scaffold_3:18172479-18172765(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224113.1.S1_at	E	E	pmrna42352	pmrna42352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224115.1.S1_at	E	E	pmrna42354	pmrna42354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224118.1.S1_at	E	E	pmrna42357	pmrna42357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224119.1.S1_at	E	E	pmrna42358	pmrna42358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224121.1.S1_a_at	E	E	pmrna42360	pmrna42360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224121.1.S1_at	E	E	pmrna42360	pmrna42360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224121.1.S1_x_at	E	E	pmrna42360	pmrna42360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224151.1.S1_at	E	E	pmrna42414	pmrna42414	scaffold_1:8620482-8620521(+) (11)	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	NA	NA
PtpAffx.224164.1.S1_at	E	E	pmrna42440	pmrna42440	scaffold_1:15545212-15545250(-) (11)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os09g08510.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	NA	NA	NA
PtpAffx.224172.1.S1_at	E	E	pmrna42455	pmrna42455	scaffold_1:23887826-23888424(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g21070.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g109710.1	"reverse transcriptase - beet retrotransposon, putative "	NA	NA	NA
PtpAffx.224225.1.S1_at	E	E	pmrna42580	pmrna42580	scaffold_2:1071724-1072688(+) (9)	NA	Q39547	Cucumisin	AT1G20160.2	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30458.1	"subtilisin-like protease, putative, expressed"	Medtr3g156980.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA "	NA	NA	NA
PtpAffx.224292.1.S1_s_at	E	E	pmrna42708	pmrna42708	scaffold_3:1793080-1793182(+) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT3G24255.1	RNA-directed DNA polymerase (reverse transcriptase)-related family protein 	LOC_Os04g51590.1	"retrotransposon protein, putative, unclassified"	Medtr1g089710.1	"RNA-directed DNA polymerase (Reverse transcriptase); Histone H2B; Histone-fold; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.224375.1.S1_at	E	E	pmrna42847	pmrna42847	scaffold_4:1789021-1789105(+) (9)	NA	Q9C5S9	Cysteine-rich receptor-like protein kinase 6	AT4G23140.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 6 	LOC_Os04g54190.1	"cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed"	Medtr4g124450.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.22439.1.A1_s_at	E	E	CV268565	CV268565	NA	NA	NA	NA	AT2G21300.2	ATP binding microtubule motor family protein 	LOC_Os04g45580.1	"kinesin motor domain containing protein, expressed"	Medtr4g097240.1	"Kinesin, motor region "	NA	NA	NA
PtpAffx.224431.1.S1_at	E	E	pmrna42953	pmrna42953	NA	NA	Q9LLL8	Xylem serine proteinase 1	AT4G10520.1	Subtilase family protein 	LOC_Os09g36110.1	"OsSub59 - Putative Subtilisin homologue, expressed"	Medtr4g097030.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	NA	NA	NA
PtpAffx.224476.1.S1_at	E	E	pmrna43048	pmrna43048	scaffold_5:13427979-13428146(-) (10)	NA	Q01902	"Ribosomal protein S7, mitochondrial"	ATMG01270.1	mitochondrial ribosomal protein S7 	LOC_Os12g34045.1	"mitochondrial ribosomal protein S7, putative"	NA	NA	NA	NA	NA
PtpAffx.224487.1.S1_at	E	E	pmrna43068	pmrna43068	scaffold_5:21997071-21997260(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224511.1.S1_at	E	E	pmrna43121	pmrna43121	scaffold_6:6688223-6688705(+) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT3G24255.1	RNA-directed DNA polymerase (reverse transcriptase)-related family protein 	LOC_Os12g43060.1	"retrotransposon protein, putative, unclassified"	Medtr7g068430.1	"RNA-directed DNA polymerase (reverse transcriptase), related "	NA	NA	NA
PtpAffx.224513.1.S1_at	E	E	pmrna43126	pmrna43126	NA	NA	Q13231	Chitotriosidase-1	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain 	LOC_Os11g27400.1	"glycosyl hydrolase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.224551.1.S1_at	E	E	pmrna43186	pmrna43186	NA	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g35260.1	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr1g025630.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.224558.1.S1_at	E	E	pmrna43205	pmrna43205	scaffold_1:35805868-35805978(-) (11)//scaffold_10:10585468-10585578(+) (11)//scaffold_15:6259403-6259513(-) (10)//scaffold_18:685983-686093(+) (11)//scaffold_7:3976731-3976841(+) (10)//scaffold_8:2745242-2745352(+) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT5G42905.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os06g46960.1	"nucleic acid binding protein, putative"	Medtr8g078260.1	Ribonuclease H 	NA	NA	NA
PtpAffx.224558.1.S1_s_at	E	E	pmrna43205	pmrna43205	scaffold_1:35805987-35806376(-) (11)//scaffold_10:10585070-10585459(+) (11)//scaffold_15:6259522-6259911(-) (11)//scaffold_1595:6596-6855(+) (9)//scaffold_18:685585-685974(+) (11)//scaffold_18:5597358-5597747(+) (11)//scaffold_7:3976333-3976722(+) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT5G42905.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os06g46960.1	"nucleic acid binding protein, putative"	Medtr8g078260.1	Ribonuclease H 	NA	NA	NA
PtpAffx.224581.1.S1_at	E	E	pmrna43244	pmrna43244	scaffold_7:14742107-14742604(-) (10)	NA	NA	NA	AT3G13020.1	hAT transposon superfamily protein 	LOC_Os06g49050.1	"hAT dimerisation domain containing protein, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
PtpAffx.224643.1.S1_at	E	E	pmrna43386	pmrna43386	scaffold_1:35806384-35806523(-) (11)//scaffold_10:10584923-10585062(+) (11)//scaffold_15:6259919-6260058(-) (11)//scaffold_1595:6449-6588(+) (11)//scaffold_18:685438-685577(+) (11)//scaffold_18:5597211-5597350(+) (11)//scaffold_7:3976186-3976325(+) (11)	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT5G42905.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os06g46960.1	"nucleic acid binding protein, putative"	Medtr8g078260.1	Ribonuclease H 	NA	NA	NA
PtpAffx.224686.1.S1_at	E	E	pmrna43487	pmrna43487	NA	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr2g021630.1	Ankyrin 	NA	NA	NA
PtpAffx.224705.1.S1_at	E	E	pmrna43512	pmrna43512	NA	NA	NA	NA	NA	NA	LOC_Os11g38300.1	"retrotransposon protein, putative, unclassified"	Medtr4g042780.1	"helicase-like protein, related "	NA	NA	NA
PtpAffx.224707.1.S1_at	E	E	pmrna43514	pmrna43514	NA	NA	Q8GYA4	Cysteine-rich receptor-like protein kinase 10	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr1g025630.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.224728.1.S1_at	E	E	pmrna43542	pmrna43542	NA	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os04g54070.1	"receptor-like kinase, putative"	Medtr4g124480.1	"EGF-like, subtype 2; S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like "	NA	NA	NA
PtpAffx.224755.1.S1_s_at	E	E	pmrna43583	pmrna43583	NA	NA	A4GYT7	Photosystem II CP47 chlorophyll apoprotein	ATCG00680.1	photosystem II reaction center protein B 	LOC_Os06g39708.1	"photosystem II P680 chlorophyll A apoprotein, putative"	Medtr4g042470.1	Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.224765.1.S1_at	E	E	pmrna43602	pmrna43602	NA	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g095790.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	NA	NA	NA
PtpAffx.224788.1.S1_at	E	E	pmrna43637	pmrna43637	scaffold_11:16907419-16907919(-) (10)	NA	NA	NA	AT1G21280.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g40450.1	"retrotransposon protein, putative, unclassified"	Medtr8g044140.1	"Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.224798.1.S1_at	E	E	pmrna43653	pmrna43653	scaffold_12:847632-847814(-) (9)	NA	NA	NA	AT1G79740.1	hAT transposon superfamily 	LOC_Os01g12280.2	"hAT dimerisation domain-containing protein, putative, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
PtpAffx.224831.1.S1_at	E	E	pmrna43706	pmrna43706	scaffold_13:2008170-2008737(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224886.1.S1_x_at	E	E	pmrna43793	pmrna43793	scaffold_14:10982767-10983315(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22489.1.S1_at	E	E	DN499468	DN499468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224910.1.S1_at	E	E	pmrna43836	pmrna43836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224932.1.S1_a_at	E	E	pmrna43865	pmrna43865	NA	NA	P59287	"Casbene synthase, chloroplastic"	AT5G23960.2	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.2	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	NA	NA	NA
PtpAffx.224934.1.S1_at	E	E	pmrna43868	pmrna43868	scaffold_19:3672440-3672906(+) (10)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.2	expressed protein	Medtr4g111180.1	TIR; Disease resistance protein 	NA	NA	NA
PtpAffx.224942.1.S1_x_at	E	E	pmrna43879	pmrna43879	scaffold_19:8189369-8189417(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22495.1.S1_at	E	E	DN499193	DN499193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224952.1.S1_at	E	E	pmrna43893	pmrna43893	NA	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.2	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g10100.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr7g040520.1	"Tyrosine protein kinase, active site "	NA	NA	NA
PtpAffx.224966.1.S1_at	E	E	pmrna43913	pmrna43913	scaffold_1:33450265-33450494(+) (9)//scaffold_103:41595-41824(-) (9)//scaffold_14:14911388-14911645(-) (10)//scaffold_525:13805-14062(-) (10)	NA	NA	NA	NA	NA	LOC_Os09g07070.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.224995.1.S1_at	E	E	pmrna43969	pmrna43969	scaffold_15:12376991-12377469(+) (9)	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	NA	NA	NA
PtpAffx.22500.1.S1_at	E	E	DN499121	DN499121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225004.1.S1_at	E	E	pmrna43988	pmrna43988	NA	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	NA	NA	NA
PtpAffx.22501.1.S1_at	E	E	BU830471	BU830471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225011.1.S1_at	E	E	pmrna44002	pmrna44002	NA	NA	NA	NA	AT5G45480.1	Protein of unknown function (DUF594) 	LOC_Os01g72380.1	expressed protein	Medtr2g055510.1	Protein of unknown function DUF594 	NA	NA	NA
PtpAffx.225013.1.S1_at	E	E	pmrna44011	pmrna44011	scaffold_16:960486-961049(-) (11)	NA	NA	NA	AT3G22220.2	hAT transposon superfamily 	LOC_Os03g60800.1	"transposon protein, putative, unclassified, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
PtpAffx.225039.1.S1_s_at	E	E	pmrna44077	pmrna44077	scaffold_1:33450172-33450235(+) (11)//scaffold_1:43643116-43643179(-) (11)//scaffold_12:518599-518660(-) (10)//scaffold_13:5278449-5278512(+) (11)//scaffold_139:9525-9588(-) (11)//scaffold_14:14911647-14911710(-) (9)//scaffold_15:12835881-12835944(+) (11)//scaffold_170:34991-35054(-) (9)//scaffold_18:2614985-2615048(-) (11)//scaffold_19:642607-642670(+) (10)//scaffold_19:2298158-2298221(-) (11)//scaffold_19:13853738-13853801(+) (9)//scaffold_27:280706-280769(+) (11)//scaffold_364:45492-45555(+) (11)//scaffold_445:8110-8173(+) (9)//scaffold_46:77908-77971(-) (11)//scaffold_5:675124-675183(+) (9)//scaffold_6:12739446-12739509(-) (11)//scaffold_75:13731-13794(+) (9)//scaffold_8:12605827-12605890(-) (11)//scaffold_80:84319-84382(+) (11)	NA	P04323	Retrovirus-related Pol polyprotein from transposon 17.6	NA	NA	LOC_Os01g06700.1	"retrotransposon protein, putative, unclassified"	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.225112.1.S1_at	E	E	pmrna44216	pmrna44216	NA	NA	O65351	Subtilisin-like protease	AT2G04160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	NA	NA	NA
PtpAffx.225127.1.S1_at	E	E	pmrna44240	pmrna44240	scaffold_3:19893991-19894525(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g39020.1	"retrotransposon protein, putative, unclassified"	Medtr3g162430.1	"RNA-directed DNA polymerase (Reverse transcriptase); Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.225135.1.S1_s_at	E	E	pmrna44257	pmrna44257	NA	NA	Q14F96	"50S ribosomal protein L23, chloroplastic"	ATCG01300.1	ribosomal protein L23 	LOC_Os10g21358.1	"chloroplast 50S ribosomal protein L23, putative"	Medtr4g062140.1	"Nucleic acid-binding, OB-fold; Ribosomal L23 and L15e, core "	NA	NA	NA
PtpAffx.225154.1.S1_at	E	E	pmrna44289	pmrna44289	NA	NA	A4GYX1	"NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic"	ATCG01100.1	NADH dehydrogenase family protein 	LOC_Os10g21396.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr4g022950.1	"Respiratory-chain NADH dehydrogenase, subunit 1 "	NA	NA	NA
PtpAffx.225195.1.S1_at	E	E	pmrna44350	pmrna44350	NA	NA	A4GYT7	Photosystem II CP47 chlorophyll apoprotein	ATCG00680.1	photosystem II reaction center protein B 	LOC_Os10g21310.1	"photosystem II P680 chlorophyll A apoprotein, putative, expressed"	Medtr3g059040.1	Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.225195.1.S1_x_at	E	E	pmrna44350	pmrna44350	NA	NA	A4GYT7	Photosystem II CP47 chlorophyll apoprotein	ATCG00680.1	photosystem II reaction center protein B 	LOC_Os10g21310.1	"photosystem II P680 chlorophyll A apoprotein, putative, expressed"	Medtr3g059040.1	Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.225201.1.S1_at	E	E	pmrna44363	pmrna44363	scaffold_1:5940722-5941509(+) (10)	NA	NA	NA	AT1G79740.1	hAT transposon superfamily 	LOC_Os01g12280.2	"hAT dimerisation domain-containing protein, putative, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
PtpAffx.225214.1.S1_at	E	E	pmrna44394	pmrna44394	scaffold_8:17260473-17260957(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g06700.1	"retrotransposon protein, putative, unclassified"	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.225249.1.S1_at	E	E	pmrna44464	pmrna44464	NA	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44440.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.225256.1.S1_s_at	E	E	pmrna44478	pmrna44478	NA	NA	A4GYT7	Photosystem II CP47 chlorophyll apoprotein	ATCG00680.1	photosystem II reaction center protein B 	LOC_Os06g39708.1	"photosystem II P680 chlorophyll A apoprotein, putative"	Medtr4g042470.1	Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.22527.1.S1_at	E	E	DN487877	DN487877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225282.1.S1_s_at	E	E	pmrna44520	pmrna44520	scaffold_1:21984665-21985223(-) (11)//scaffold_1:29817961-29818495(-) (10)//scaffold_11:13144033-13144591(+) (11)//scaffold_12:12129758-12130316(+) (11)//scaffold_157:36547-36911(+) (10)//scaffold_2:23485402-23485960(-) (11)//scaffold_20:728081-728639(+) (11)//scaffold_3:459939-460497(+) (11)//scaffold_346:11070-11434(+) (10)//scaffold_4:13125037-13125597(+) (10)//scaffold_5:15665740-15666298(+) (11)//scaffold_963:8639-9003(+) (10)	NA	NA	NA	AT3G01410.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os07g13340.1	"retrotransposon protein, putative, unclassified"	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.225310.1.S1_s_at	E	E	pmrna44568	pmrna44568	scaffold_2:3746148-3746584(+) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.2	expressed protein	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.225352.1.S1_at	E	E	pmrna44645	pmrna44645	NA	NA	O81833	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	AT4G27300.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr3g008860.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	NA	NA	NA
PtpAffx.225365.1.S1_s_at	E	E	pmrna44670	pmrna44670	NA	NA	Q8KWM1	Serine-aspartate repeat-containing protein I	AT5G07570.1	glycine/proline-rich protein 	LOC_Os01g44430.1	"retrotransposon protein, putative, unclassified"	Medtr5g083160.1	"AAA ATPase; Peptidase M41, FtsH "	NA	NA	NA
PtpAffx.225365.1.S1_x_at	E	E	pmrna44670	pmrna44670	NA	NA	Q8KWM1	Serine-aspartate repeat-containing protein I	AT5G07570.1	glycine/proline-rich protein 	LOC_Os01g44430.1	"retrotransposon protein, putative, unclassified"	Medtr5g083160.1	"AAA ATPase; Peptidase M41, FtsH "	NA	NA	NA
PtpAffx.225378.1.S1_at	E	E	pmrna44690	pmrna44690	NA	NA	Q0ZJ24	Photosystem II CP43 chlorophyll apoprotein	ATCG00280.1	photosystem II reaction center protein C 	LOC_Os10g21212.1	"photosystem II 44 kDa reaction center protein, putative"	Medtr8g015970.1	Photosynthetic reaction centre protein; Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.225389.1.S1_at	E	E	pmrna44704	pmrna44704	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	NA	NA	NA
PtpAffx.22539.1.S1_s_at	E	E	CF228915	CF228915	scaffold_14:1473428-1473994(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225404.1.S1_at	E	E	pmrna44728	pmrna44728	scaffold_18:8546554-8546655(-) (11)	NA	NA	NA	AT1G40390.1	DNAse I-like superfamily protein 	LOC_Os04g44370.1	"retrotransposon protein, putative, unclassified"	Medtr8g034890.1	Endonuclease/exonuclease/phosphatase 	NA	NA	NA
PtpAffx.225422.1.S1_at	E	E	pmrna44762	pmrna44762	scaffold_10:4808615-4808922(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225459.1.S1_at	E	E	pmrna44819	pmrna44819	NA	NA	Q54W90	Protein SEY1 homolog	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os11g37260.1	"SEY1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.225462.1.S1_at	E	E	pmrna44824	pmrna44824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225480.1.S1_at	E	E	pmrna44850	pmrna44850	scaffold_12:189344-189690(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT2G33060.1	receptor like protein 27 	LOC_Os01g06900.1	"verticillium wilt disease resistance protein Ve2, putative, expressed"	Medtr5g094230.1	"Leucine-rich repeat, typical subtype "	NA	NA	NA
PtpAffx.225488.1.S1_at	E	E	pmrna44868	pmrna44868	NA	NA	O81825	Probable disease resistance protein At4g27220	AT4G27220.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr4g124740.1	"Heat shock protein DnaJ, N-terminal; NB-ARC; AAA ATPase "	NA	NA	NA
PtpAffx.225495.1.S1_s_at	E	E	pmrna44880	pmrna44880	NA	NA	P60621	Cytochrome c oxidase subunit 1	ATMG01360.1	cytochrome  oxidase 	LOC_Os12g33946.1	"cytochrome c oxidase subunit 1, putative"	Medtr1g006730.1	"Cytochrome c oxidase, subunit I "	NA	NA	NA
PtpAffx.225511.1.S1_at	E	E	pmrna44912	pmrna44912	NA	NA	NA	NA	NA	NA	LOC_Os08g30250.1	"transposon protein, putative, CACTA, En/Spm sub-class"	Medtr5g027900.1	En/Spm-like transposon proteins 	NA	NA	NA
PtpAffx.225518.1.S1_at	E	E	pmrna44922	pmrna44922	scaffold_1:47913107-47913280(+) (11)	NA	Q9T048	Disease resistance protein At4g27190	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	LOC_Os01g72680.1	"disease resistance protein RPS2, putative"	Medtr5g099510.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.225548.1.S1_at	E	E	pmrna44976	pmrna44976	NA	NA	P60621	Cytochrome c oxidase subunit 1	ATMG01360.1	cytochrome  oxidase 	LOC_Os12g33946.1	"cytochrome c oxidase subunit 1, putative"	Medtr1g006730.1	"Cytochrome c oxidase, subunit I "	NA	NA	NA
PtpAffx.225550.1.S1_s_at	E	E	pmrna44978	pmrna44978	NA	NA	A4GYT7	Photosystem II CP47 chlorophyll apoprotein	ATCG00680.1	photosystem II reaction center protein B 	LOC_Os06g39708.1	"photosystem II P680 chlorophyll A apoprotein, putative"	Medtr4g042470.1	Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.225567.1.S1_at	E	E	pmrna45001	pmrna45001	NA	NA	NA	NA	AT5G65005.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	NA	NA	Medtr5g074930.1	Ribonuclease H 	NA	NA	NA
PtpAffx.225611.1.S1_at	E	E	pmrna45072	pmrna45072	NA	NA	NA	NA	NA	NA	LOC_Os01g45290.1	"retrotransposon protein, putative, unclassified, expressed"	AC233082_3.1	"RNA-directed DNA polymerase (Reverse transcriptase); Peptidase aspartic, active site; Retrotransposon gag protein AC233082.3 19216-16757 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.225627.1.S1_s_at	E	E	pmrna45098	pmrna45098	NA	NA	P14813	Photosystem II CP47 chlorophyll apoprotein	ATCG00680.1	photosystem II reaction center protein B 	LOC_Os09g04680.1	"photosystem II P680 chlorophyll A apoprotein, putative"	Medtr4g042470.1	Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.225638.1.S1_at	E	E	pmrna45120	pmrna45120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225638.1.S1_x_at	E	E	pmrna45120	pmrna45120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225644.1.S1_at	E	E	pmrna45131	pmrna45131	NA	NA	Q67H84	Photosystem II reaction center protein L	ATCG00560.1	photosystem II reaction center protein L 	LOC_Os10g21298.1	"cytochrome b559 subunit alpha, putative"	Medtr4g042270.1	Photosystem II protein PsbL; Photosystem II protein cytochrome b559; 	NA	NA	NA
PtpAffx.225644.1.S1_x_at	E	E	pmrna45131	pmrna45131	NA	NA	Q67H84	Photosystem II reaction center protein L	ATCG00560.1	photosystem II reaction center protein L 	LOC_Os10g21298.1	"cytochrome b559 subunit alpha, putative"	Medtr4g042270.1	Photosystem II protein PsbL; Photosystem II protein cytochrome b559; 	NA	NA	NA
PtpAffx.225647.1.S1_x_at	E	E	pmrna45134	pmrna45134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225650.1.S1_at	E	E	pmrna45141	pmrna45141	NA	NA	NA	NA	AT1G43760.1	DNAse I-like superfamily protein 	LOC_Os12g29700.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.225700.1.S1_at	E	E	pmrna45254	pmrna45254	NA	NA	P94024	Uncharacterized mitochondrial protein AtMg00170/AtMg00620	ATMG00620.1	hypothetical protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225703.1.S1_at	E	E	pmrna45258	pmrna45258	NA	NA	Q12955	Ankyrin-3	AT4G03500.1	Ankyrin repeat family protein 	LOC_Os09g16550.1	"ankyrin repeat family protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	NA	NA	NA
PtpAffx.225757.1.S1_at	E	E	pmrna45334	pmrna45334	scaffold_14:546420-546644(+) (11)	NA	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr2g018320.1	NB-ARC 	NA	NA	NA
PtpAffx.225762.1.S1_s_at	E	E	pmrna45341	pmrna45341	NA	NA	Q9ZR08	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	AT4G03230.1	S-locus lectin protein kinase family protein 	LOC_Os01g57480.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr8g070970.1	S-locus glycoprotein; Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	NA	NA	NA
PtpAffx.225781.1.S1_at	E	E	pmrna45372	pmrna45372	scaffold_10:16825434-16825964(+) (9)//scaffold_8:2575858-2576388(-) (11)	NA	NA	NA	AT5G48050.1	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g07870.1	"retrotransposon protein, putative, unclassified"	Medtr5g029040.1	"LTRGag-pol-polymerase 3, related "	NA	NA	NA
PtpAffx.225785.1.S1_at	E	E	pmrna45378	pmrna45378	scaffold_88:6538-7399(+) (11)	NA	NA	NA	AT5G45470.1	Protein of unknown function (DUF594) 	LOC_Os01g58500.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	NA	NA	NA
PtpAffx.225842.1.S1_at	E	E	pmrna45463	pmrna45463	scaffold_1:48037320-48037753(-) (10)//scaffold_18:3461160-3461593(+) (11)//scaffold_4:5730133-5730566(-) (11)	NA	P20825	Retrovirus-related Pol polyprotein from transposon 297	NA	NA	LOC_Os01g06700.1	"retrotransposon protein, putative, unclassified"	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.225843.1.S1_s_at	E	E	pmrna45464	pmrna45464	NA	NA	Q14FC7	Cytochrome b6	ATCG00720.1	photosynthetic electron transfer B 	LOC_Os10g21324.1	"cytochrome b6, putative"	Medtr2g080780.1	Photosystem II phosphoprotein PsbH 	NA	NA	NA
PtpAffx.225848.1.S1_at	E	E	pmrna45473	pmrna45473	scaffold_1:607737-607886(-) (9)//scaffold_1:48222869-48223018(-) (11)//scaffold_1140:6271-6420(+) (11)//scaffold_254:26784-26933(-) (11)//scaffold_423:7326-7475(-) (10)//scaffold_64:62737-62886(-) (11)//scaffold_71:54318-54467(-) (11)	NA	NA	NA	AT5G65005.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	NA	NA	Medtr5g074930.1	Ribonuclease H 	NA	NA	NA
PtpAffx.225849.1.S1_x_at	E	E	pmrna45474	pmrna45474	NA	NA	Q8KWM1	Serine-aspartate repeat-containing protein I	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225867.1.S1_at	E	E	pmrna45502	pmrna45502	scaffold_1:19217286-19217737(+) (11)//scaffold_14:17496025-17496457(-) (9)//scaffold_2234:1914-2365(-) (10)	NA	NA	NA	AT1G47350.1	F-box associated ubiquitination effector family protein 	LOC_Os12g02010.1	"retrotransposon protein, putative, unclassified"	Medtr2g077390.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.225879.1.S1_at	E	E	pmrna45524	pmrna45524	scaffold_17:7403071-7403180(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225886.1.S1_at	E	E	pmrna45532	pmrna45532	scaffold_1:44027445-44027629(-) (9)//scaffold_11:1167579-1167784(+) (10)//scaffold_11:1532684-1532889(+) (10)//scaffold_1182:66-250(-) (9)//scaffold_12:12137238-12137443(+) (10)//scaffold_15:14487298-14487503(-) (10)//scaffold_1546:5337-5542(-) (10)//scaffold_16:625372-625577(-) (10)//scaffold_16:12027508-12027713(+) (10)//scaffold_17:903617-903822(-) (10)//scaffold_17:1414362-1414567(-) (10)//scaffold_17:13890669-13890874(+) (10)//scaffold_19:480383-480588(+) (10)//scaffold_19:5403454-5403659(+) (10)//scaffold_228:11440-11645(+) (10)//scaffold_2406:449-654(-) (10)//scaffold_27:9539-9744(+) (10)//scaffold_5:875382-875587(-) (10)//scaffold_6:850818-851023(+) (10)	NA	NA	NA	AT3G29785.1	unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225894.1.S1_at	E	E	pmrna45541	pmrna45541	scaffold_1:42175806-42176098(+) (10)//scaffold_1:48292733-48293025(-) (11)//scaffold_10:3263296-3263588(-) (11)//scaffold_108:47974-48266(-) (10)//scaffold_11:797266-797558(-) (11)//scaffold_11:7098301-7098593(-) (9)//scaffold_11:7137182-7137474(-) (11)//scaffold_16:1334785-1335077(-) (10)//scaffold_17:1432323-1432615(+) (11)//scaffold_17:4271802-4272094(-) (11)//scaffold_18:14393212-14393504(+) (10)//scaffold_19:2261177-2261469(+) (10)//scaffold_19:10349084-10349376(-) (11)//scaffold_25:35259-35551(-) (11)//scaffold_31:75103-75395(+) (10)//scaffold_379:16424-16716(+) (10)//scaffold_4:22569971-22571162(+) (9)//scaffold_8:11664560-11664823(-) (9)	NA	NA	NA	AT1G48720.1	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g45550.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.225902.1.S1_at	E	E	pmrna45550	pmrna45550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225905.1.S1_at	E	E	pmrna45553	pmrna45553	scaffold_1:5724860-5724895(-) (9)//scaffold_1:33449656-33449691(+) (9)//scaffold_1:39258407-39258442(-) (9)//scaffold_103:42398-42433(-) (9)//scaffold_11:9019332-9019367(+) (9)//scaffold_13:5277933-5278448(+) (11)//scaffold_139:10069-10104(-) (9)//scaffold_14:14912191-14912226(-) (9)//scaffold_15:12835368-12835403(+) (9)//scaffold_170:35535-35570(-) (9)//scaffold_18:2615529-2615564(-) (9)//scaffold_19:642091-642126(+) (9)//scaffold_19:3506676-3506711(-) (9)//scaffold_19:13853222-13853257(+) (9)//scaffold_445:7594-7629(+) (9)//scaffold_46:78452-78487(-) (10)	NA	P04323	Retrovirus-related Pol polyprotein from transposon 17.6	NA	NA	LOC_Os01g06700.1	"retrotransposon protein, putative, unclassified"	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.225905.1.S1_x_at	E	E	pmrna45553	pmrna45553	scaffold_1:5724824-5724895(-) (9)//scaffold_1:33449656-33449727(+) (9)//scaffold_1:39258371-39258442(-) (9)//scaffold_103:42362-42433(-) (9)//scaffold_11:9019332-9019403(+) (9)//scaffold_13:5277933-5278448(+) (11)//scaffold_14:14912155-14912226(-) (9)//scaffold_15:12835368-12835439(+) (9)//scaffold_170:35499-35570(-) (9)//scaffold_18:2615493-2615564(-) (9)//scaffold_19:642091-642162(+) (9)//scaffold_19:3506640-3506711(-) (9)//scaffold_19:13853222-13853293(+) (9)//scaffold_445:7594-7665(+) (9)//scaffold_46:78416-78487(-) (10)	NA	P04323	Retrovirus-related Pol polyprotein from transposon 17.6	NA	NA	LOC_Os01g06700.1	"retrotransposon protein, putative, unclassified"	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.22598.1.S1_at	E	E	CV273129	CV273129	NA	NA	NA	NA	AT1G71865.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22604.1.S1_at	E	E	DN485542	DN485542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22618.1.S1_at	E	E	DN484872	DN484872	NA	NA	NA	NA	AT3G15830.1	phosphatidic acid phosphatase-related / PAP2-related 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22622.1.S1_at	E	E	DN494201	DN494201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22654.1.S1_at	E	E	DN502754	DN502754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22661.1.S1_at	E	E	BU879074	BU879074	scaffold_1:38191206-38191706(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22670.1.S1_a_at	E	E	CK114117	CK114117	scaffold_10:20020586-20020804(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22684.1.S1_at	E	E	DN491476	DN491476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2270.1.A1_s_at	E	E	CV282036	CV282036	NA	NA	A4GYP4	"ATP synthase subunit b, chloroplastic"	ATCG00130.1	"ATPase, F0 complex, subunit B/B', bacterial/chloroplast "	LOC_Os10g38272.1	"ATP synthase B chain, putative"	Medtr4g108970.1	"H+-transporting two-sector ATPase, alpha/beta subunit, N-terminal "	NA	NA	NA
PtpAffx.2270.2.A1_a_at	E	E	CV256802	CV256802	NA	NA	A4GYP4	"ATP synthase subunit b, chloroplastic"	ATCG00130.1	"ATPase, F0 complex, subunit B/B', bacterial/chloroplast "	LOC_Os10g38272.1	"ATP synthase B chain, putative"	Medtr4g042350.1	"ATP synthase B chain, putative "	NA	NA	NA
PtpAffx.22715.1.A1_at	E	E	DN490708	DN490708	scaffold_2:9941083-9941262(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22718.1.S1_at	E	E	BU809903	BU809903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22721.1.S1_at	E	E	DN490510	DN490510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22722.1.A1_at	E	E	DN490456	DN490456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22723.1.S1_at	E	E	DN490448	DN490448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22742.1.S1_at	E	E	BU834563	BU834563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22758.1.A1_at	E	E	DN488665	DN488665	NA	NA	Q8L9Y0	Serine carboxypeptidase-like 25	AT3G02110.1	serine carboxypeptidase-like 25 	LOC_Os02g55130.4	"OsSCP10 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	NA	NA	NA
PtpAffx.22763.1.S1_at	E	E	DN498036	DN498036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22771.1.S1_at	E	E	DN487755	DN487755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22774.3.S1_at	E	E	DN486032	DN486032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22797.1.S1_at	E	E	DN487016	DN487016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22809.2.S1_a_at	E	E	CF228627	CF228627	scaffold_6:18208045-18208560(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22829.1.A1_at	E	E	DN486173	DN486173	NA	NA	Q43714	(+)-delta-cadinene synthase isozyme A	AT5G23960.2	terpene synthase 21 	LOC_Os04g01810.1	"terpene synthase, putative"	Medtr5g081450.1	Terpene synthase-like; Terpenoid synthase 	NA	NA	NA
PtpAffx.22838.1.S1_at	E	E	BU815372	BU815372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22840.1.A1_at	E	E	DN485625	DN485625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22841.1.A1_at	E	E	DN485569	DN485569	NA	NA	NA	NA	AT2G35190.1	novel plant snare 11 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2286.4.S1_at	E	E	DN490010	DN490010	NA	NA	NA	NA	AT1G17180.1	glutathione S-transferase TAU 25 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2288.4.S1_at	E	E	CX171720	CX171720	NA	NA	P36181	Heat shock cognate protein 80	AT5G56030.1	heat shock protein 81-2 	LOC_Os08g39140.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	NA	NA
PtpAffx.22899.2.S1_at	E	E	CK106010	CK106010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.229.1.S1_at	E	E	DN484643	DN484643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2332.2.A1_a_at	E	E	DN500598	DN500598	NA	NA	P55242	"Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic"	AT1G27680.1	ADPGLC-PPase large subunit 	LOC_Os05g50380.2	"glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed"	Medtr3g162410.1	Nucleotidyl transferase; Trimeric LpxA-like 	NA	NA	NA
PtpAffx.23321.1.S1_at	E	E	CV260320	CV260320	scaffold_2:10499344-10499643(-) (10)	NA	NA	NA	AT4G00026.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os03g14890.2	"AGAP008572-PA, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.23344.1.A1_at	E	E	CV244027	CV244027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.23380.4.A1_at	E	E	CV278034	CV278034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.23392.3.A1_at	E	E	CV245474	CV245474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.23406.1.S1_at	E	E	CK091295	CK091295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2344.2.S1_at	E	E	CV237496	CV237496	NA	NA	NA	NA	AT1G80010.1	FAR1-related sequence 8 	NA	NA	Medtr2g034280.1	"FAR1; Zinc finger, SWIM-type "	NA	NA	NA
PtpAffx.2354.1.S1_at	E	E	CX657424	CX657424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2370.1.S1_at	E	E	BU815148	BU815148	NA	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	NA	NA	NA
PtpAffx.23759.1.S1_at	E	E	CX173491	CX173491	NA	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	NA	NA	NA
PtpAffx.2390.2.A1_at	E	E	CV241321	CV241321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.23974.1.A1_at	E	E	CV281004	CV281004	NA	NA	P82476	Chitin deacetylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24012.1.A1_at	E	E	CV279036	CV279036	NA	NA	Q96386	Metallothionein-like protein type 3	AT3G15353.1	metallothionein 3 	NA	NA	Medtr8g070820.1	"Plant metallothionein, family 15 "	NA	NA	NA
PtpAffx.24400.3.A1_at	E	E	CV229656	CV229656	NA	NA	Q2N2K0	"Probable phytol kinase 3, chloroplastic"	AT5G58560.1	Phosphatidate cytidylyltransferase family protein 	LOC_Os01g61560.1	"phosphatidate cytidylyltransferase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.24419.1.A1_at	E	E	CV260423	CV260423	NA	NA	NA	NA	AT3G56130.4	biotin/lipoyl attachment domain-containing protein 	NA	NA	Medtr5g090990.1	Biotin/lipoyl attachment 	NA	NA	NA
PtpAffx.2447.1.S1_a_at	E	E	CV265152	CV265152	scaffold_1:31852971-31853475(-) (11)	NA	NA	NA	AT3G27030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g30600.1	conserved hypothetical protein	NA	NA	NA	NA	NA
PtpAffx.24472.1.A1_at	E	E	CV258387	CV258387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24602.1.A1_at	E	E	CV256956	CV256956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24647.1.A1_at	E	E	CV252333	CV252333	NA	NA	P54766	GTP-binding nuclear protein Ran1B (Fragment)	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	NA	NA	NA
PtpAffx.24743.1.A1_at	E	E	CV247753	CV247753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24747.1.A1_at	E	E	CV247452	CV247452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24750.1.A1_at	E	E	CV247195	CV247195	scaffold_13:105072-105212(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24777.1.A1_at	E	E	CV246221	CV246221	NA	NA	Q9SC12	Eukaryotic translation initiation factor 5A	AT1G69410.1	eukaryotic elongation factor 5A-3 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr5g045930.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	NA	NA	NA
PtpAffx.24832.1.A1_at	E	E	CV244456	CV244456	NA	NA	NA	NA	AT5G48850.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g43040.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g064920.1	Tetratricopeptide-like helical 	NA	NA	NA
PtpAffx.24833.1.S1_at	E	E	CX186451	CX186451	NA	NA	Q8L8Z8	Monothiol glutaredoxin-S2	AT5G18600.1	Thioredoxin superfamily protein 	LOC_Os12g35330.1	OsGrx_C12 - glutaredoxin subgroup III	Medtr2g025040.1	Thioredoxin fold 	NA	NA	NA
PtpAffx.24845.1.A1_at	E	E	CV243892	CV243892	scaffold_16:4425903-4426340(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24867.1.A1_at	E	E	CV243197	CV243197	NA	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os06g41070.1	"cytochrome P450, putative, expressed"	Medtr6g009260.1	Cytochrome P450 	NA	NA	NA
PtpAffx.2487.1.S1_at	E	E	BU815069	BU815069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.11.S1_at	E	E	U27348.1	U27348.1	NA	NA	A9P822	S-adenosylmethionine synthase 1	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	NA	NA	NA
PtpAffx.249.112.S1_at	E	E	CV281947	CV281947	scaffold_6:1121089-1121153(+) (10)	NA	Q96386	Metallothionein-like protein type 3	AT4G16410.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF751 (InterPro:IPR008470); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g41630.1	hypothetical protein	Medtr8g148490.1	Protein of unknown function DUF751 	NA	NA	NA
PtpAffx.249.12.A1_x_at	E	E	M25339.1	M25339.1	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.123.A1_a_at	E	E	CV230209	CV230209	scaffold_16:12103781-12105813(+) (10)	NA	Q9LMK7	Ran-binding protein 1 homolog a	AT1G07140.1	Pleckstrin homology (PH) domain superfamily protein 	LOC_Os03g18180.1	"ranBP1 domain containing protein, expressed"	Medtr6g036210.1	Pleckstrin homology-type 	NA	NA	NA
PtpAffx.249.13.A1_x_at	E	E	M25342.1	M25342.1	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.133.S1_a_at	E	E	CK320182	CK320182	NA	NA	Q9ZNQ7	Hydrophobic protein RCI2A	AT3G05880.1	Low temperature and salt responsive protein family 	LOC_Os05g04700.1	"OsRCI2-6 - Hydrophobic protein LTI6B, expressed"	Medtr7g134790.1	Protein of unknown function UPF0057 	NA	NA	NA
PtpAffx.249.167.S1_at	E	E	CV229731	CV229731	NA	NA	P09189	Heat shock cognate 70 kDa protein	AT4G00752.1	UBX domain-containing protein 	LOC_Os01g62290.1	"DnaK family protein, putative, expressed"	Medtr7g025700.1	Heat shock protein Hsp70; 	NA	NA	NA
PtpAffx.249.168.S1_at	E	E	CV266288	CV266288	NA	NA	P05993	Cysteine proteinase (Fragment)	AT4G39090.1	Papain family cysteine protease 	LOC_Os04g24600.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	NA	NA	NA
PtpAffx.249.169.A1_a_at	E	E	CV260069	CV260069	scaffold_1:11854570-11854666(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.20.S1_x_at	E	E	CV281016	CV281016	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.202.S1_at	E	E	CV277322	CV277322	NA	NA	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	NA	NA	NA
PtpAffx.249.217.S1_at	E	E	CK096335	CK096335	NA	NA	NA	NA	AT2G31410.1	unknown protein; Has 1719 Blast hits to 1091 proteins in 184 species: Archae - 5; Bacteria - 24; Metazoa - 559; Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes - 769 (source: NCBI BLink). 	LOC_Os02g38190.1	expressed protein	Medtr7g096940.1	hypothetical protein 	NA	NA	NA
PtpAffx.249.267.S1_at	E	E	DN490686	DN490686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.285.A1_at	E	E	CV245378	CV245378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.292.A1_at	E	E	CV260437	CV260437	NA	NA	NA	NA	AT3G62410.1	CP12 domain-containing protein 2 	NA	NA	Medtr7g132970.1	Protein of unknown function CP12 	NA	NA	NA
PtpAffx.249.30.S1_x_at	E	E	CV277240	CV277240	NA	NA	Q96386	Metallothionein-like protein type 3	AT1G08380.1	photosystem I subunit O 	LOC_Os04g33830.1	"membrane protein, putative, expressed"	Medtr8g070820.1	"Plant metallothionein, family 15 "	NA	NA	NA
PtpAffx.249.308.S1_at	E	E	CA925779	CA925779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.314.S1_at	E	E	CX171386	CX171386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.315.S1_at	E	E	CV270061	CV270061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.32.S1_x_at	E	E	CN520851	CN520851	NA	NA	O75629	Protein CREG1	AT2G04690.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os06g13100.1	"CREG1 precursor, putative, expressed"	Medtr7g029710.1	FMN-binding split barrel 	NA	NA	NA
PtpAffx.249.325.S1_at	E	E	CN550269	CN550269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.326.S1_at	E	E	AJ768042	AJ768042	NA	NA	Q6DIT8	Ribosome maturation protein SBDS	AT1G43860.1	sequence-specific DNA binding transcription factors 	LOC_Os08g01620.2	"shwachman-Bodian-Diamond syndrome protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.249.350.A1_at	E	E	BU876410	BU876410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.353.A1_at	E	E	CV273034	CV273034	scaffold_11:8239138-8239317(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.354.A1_at	E	E	CV225771	CV225771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.356.S1_at	E	E	CV271423	CV271423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.379.S1_at	E	E	CV230618	CV230618	NA	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73170.1	"peroxidase precursor, putative, expressed"	Medtr1g124800.1	"Haem peroxidase, plant/fungal/bacterial "	NA	NA	NA
PtpAffx.249.385.A1_at	E	E	CV259271	CV259271	NA	NA	B6IN38	50S ribosomal protein L33	AT5G18790.1	Ribosomal protein L33 family protein 	LOC_Os05g37884.1	"50S ribosomal protein L33, putative, expressed"	Medtr1g019620.1	Ribosomal protein L33 	NA	NA	NA
PtpAffx.249.387.A1_at	E	E	CV226521	CV226521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.388.A1_at	E	E	CV270856	CV270856	NA	NA	Q42823	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g19470.2	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.2	"Ribulose bisphosphate carboxylase, small chain "	NA	NA	NA
PtpAffx.249.392.A1_at	E	E	CV255938	CV255938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.398.S1_s_at	E	E	CX658402	CX658402	scaffold_19:510425-510462(-) (11)	NA	A3FPF2	Defensin-like protein	AT2G02130.1	low-molecular-weight cysteine-rich 68 	LOC_Os03g03810.1	"DEF8 - Defensin and Defensin-like DEFL family, expressed"	Medtr3g039560.1	Gamma Purothionin 	NA	NA	NA
PtpAffx.249.399.A1_at	E	E	CV254403	CV254403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.408.A1_at	E	E	CV278060	CV278060	scaffold_17:14249521-14250090(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.418.A1_at	E	E	CV230806	CV230806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.419.A1_at	E	E	CV244764	CV244764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.440.S1_at	E	E	AJ779197	AJ779197	NA	NA	P43390	Metallothionein-like protein type 2	AT3G09390.1	metallothionein 2A 	NA	NA	Medtr7g068170.1	"Plant metallothionein, family 15 "	NA	NA	NA
PtpAffx.249.452.S1_at	E	E	AJ778458	AJ778458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.459.S1_at	E	E	AJ779194	AJ779194	NA	NA	P26291	"Cytochrome b6-f complex iron-sulfur subunit, chloroplastic"	AT4G03280.1	photosynthetic electron transfer C 	LOC_Os07g37030.1	"cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed"	Medtr2g103010.1	Rieske [2Fe-2S] region; 	NA	NA	NA
PtpAffx.249.460.S1_at	E	E	AJ773062	AJ773062	NA	NA	Q42823	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g19470.2	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.1	"Ribulose bisphosphate carboxylase, small chain "	NA	NA	NA
PtpAffx.249.472.S1_at	E	E	CK098335	CK098335	NA	NA	O04500	COBRA-like protein 6	AT1G09790.1	COBRA-like protein 6 precursor 	LOC_Os03g30250.1	"COBRA-like protein precursor, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	NA	NA	NA
PtpAffx.249.491.S1_at	E	E	BU872951	BU872951	NA	NA	Q09117	Bark storage protein B	NA	NA	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.249.497.S1_at	E	E	BU893695	BU893695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.498.A1_at	E	E	AJ778572	AJ778572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.54.A1_at	E	E	CV280523	CV280523	NA	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	NA	NA	NA
PtpAffx.249.55.A1_x_at	E	E	CV257098	CV257098	NA	NA	NA	NA	AT2G15970.1	cold regulated 413 plasma membrane 1 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.249.558.A1_a_at	E	E	CV276702	CV276702	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.558.A1_at	E	E	CV276702	CV276702	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.58.A1_x_at	E	E	BP931380	BP931380	NA	NA	Q9SV31	Probable aquaporin PIP2-5	AT3G54820.1	plasma membrane intrinsic protein 2;5 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr1g120820.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.249.589.A1_at	E	E	CV245529	CV245529	NA	NA	NA	NA	AT2G42210.4	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os02g48610.2	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr7g111560.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	NA	NA	NA
PtpAffx.249.593.S1_at	E	E	CV282744	CV282744	NA	NA	Q96386	Metallothionein-like protein type 3	AT3G15353.1	metallothionein 3 	LOC_Os05g11320.1	"metallothionein-like protein 3B, putative, expressed"	Medtr8g070820.1	"Plant metallothionein, family 15 "	NA	NA	NA
PtpAffx.249.595.A1_at	E	E	CV245743	CV245743	scaffold_2:451223-451669(+) (11)//scaffold_2:9094074-9094520(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.608.S1_at	E	E	CV241267	CV241267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.625.A1_at	E	E	CV247632	CV247632	NA	NA	Q9SUI0	UPF0057 membrane protein At4g30660	AT4G30660.2	Low temperature and salt responsive protein family 	LOC_Os04g50990.1	"L11 domain containing ribosomal protein, putative, expressed"	Medtr8g145140.1	Protein of unknown function UPF0057 	NA	NA	NA
PtpAffx.249.629.A1_at	E	E	CV227193	CV227193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.640.A1_at	E	E	CV237444	CV237444	NA	NA	P43390	Metallothionein-like protein type 2	AT3G09390.1	metallothionein 2A 	NA	NA	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	NA	NA
PtpAffx.249.65.A1_at	E	E	CV243673	CV243673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.656.A1_a_at	E	E	CV230534	CV230534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.664.S1_at	E	E	CV244350	CV244350	scaffold_6:1978313-1978547(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.668.A1_at	E	E	DN492034	DN492034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.669.A1_at	E	E	BP935128	BP935128	NA	NA	P0CH05	Polyubiquitin	AT1G65350.1	ubiquitin 13 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr1g079000.1	Ubiquitin 	NA	NA	NA
PtpAffx.249.67.A1_at	E	E	CV240981	CV240981	scaffold_11:6979415-6979550(-) (11)//scaffold_17:2905806-2905941(+) (11)//scaffold_17:2914251-2914386(+) (11)	NA	Q40066	Serpin-ZX	AT1G47710.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41419.1	"serpin domain containing protein, putative, expressed"	Medtr3g148650.1	"Proteinase inhibitor I4, serpin "	NA	NA	NA
PtpAffx.249.670.A1_at	E	E	BP930255	BP930255	NA	NA	P0CH05	Polyubiquitin	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr4g110760.1	Ubiquitin 	NA	NA	NA
PtpAffx.249.671.A1_at	E	E	CK095713	CK095713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.683.A1_at	E	E	BP933394	BP933394	NA	NA	P0CH05	Polyubiquitin	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr4g110760.4	Ubiquitin 	NA	NA	NA
PtpAffx.249.686.S1_a_at	E	E	CV262164	CV262164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.698.A1_at	E	E	CK091489	CK091489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.702.S1_at	E	E	CV283133	CV283133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.71.A1_a_at	E	E	CV277687	CV277687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.727.S1_at	E	E	CV262928	CV262928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.740.A1_at	E	E	CV227222	CV227222	scaffold_46:179794-179836(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.75.A1_a_at	E	E	CV261243	CV261243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.756.A1_at	E	E	CV228359	CV228359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.760.A1_at	E	E	CV245706	CV245706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.761.A1_at	E	E	CV247140	CV247140	NA	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT4G34870.1	rotamase cyclophilin 5 	LOC_Os09g39780.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	NA	NA
PtpAffx.249.8.A1_s_at	E	E	CV282700	CV282700	NA	NA	P24007	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g17600.1	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.1	"Ribulose bisphosphate carboxylase, small chain "	NA	NA	NA
PtpAffx.249.8.A2_s_at	E	E	CF936350	CF936350	scaffold_10:15106427-15106565(+) (11)	NA	P24007	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g17600.1	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.1	"Ribulose bisphosphate carboxylase, small chain "	NA	NA	NA
PtpAffx.249.847.A1_at	E	E	CV236602	CV236602	NA	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.86.A1_a_at	E	E	CN519209	CN519209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.860.A1_at	E	E	CV244381	CV244381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.880.A1_at	E	E	BP934904	BP934904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.9.A2_at	E	E	CV272570	CV272570	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.92.A1_x_at	E	E	CV260297	CV260297	scaffold_20:379382-379945(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24903.1.A1_at	E	E	CV241929	CV241929	scaffold_6:4690083-4690677(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24922.1.A1_at	E	E	CV241359	CV241359	scaffold_1:46039091-46039570(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24929.1.A1_at	E	E	CV241065	CV241065	scaffold_2:13767336-13767677(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24935.1.A1_at	E	E	CV240815	CV240815	NA	NA	Q9SEL5	Vesicle transport v-SNARE 12	AT1G26670.1	Vesicle transport v-SNARE family protein 	LOC_Os01g51120.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr5g045560.1	Vesicle transport v-SNARE 	NA	NA	NA
PtpAffx.25008.1.S1_s_at	E	E	CF230476	CF230476	scaffold_1:8128408-8129068(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.25089.1.A1_at	E	E	CV233813	CV233813	NA	NA	Q42064	60S ribosomal protein L8-3	AT4G36130.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr5g021750.1	Elongation factor P-like protein YeiP 	NA	NA	NA
PtpAffx.25104.1.A1_at	E	E	CV232990	CV232990	NA	NA	Q7XBQ9	Disease resistance protein RGA2	AT5G44510.1	target of AVRB operation1 	LOC_Os11g10760.1	"NBS-LRR disease resistance protein, putative, expressed"	Medtr5g036660.1	Leucine-rich repeat 	NA	NA	NA
PtpAffx.25120.1.A1_at	E	E	CV232007	CV232007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2522.3.A1_at	E	E	CV269821	CV269821	NA	NA	P16061	Endochitinase WIN8	AT3G12500.1	basic chitinase 	LOC_Os05g33140.1	"CHIT5 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	NA	NA	NA
PtpAffx.25256.1.A1_at	E	E	CV227010	CV227010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.25289.1.A1_at	E	E	CV225512	CV225512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2533.2.A1_at	E	E	BP934368	BP934368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.25342.2.A1_at	E	E	BP932801	BP932801	scaffold_10:12545287-12545627(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.25342.4.A1_at	E	E	CV240360	CV240360	NA	NA	Q39054	Molybdopterin biosynthesis protein CNX1	AT5G20990.1	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) 	NA	NA	Medtr5g094600.1	"Bifunctional molybdenum cofactor molybdenum incorporation/glycine receptor, gephyrin "	NA	NA	NA
PtpAffx.25457.3.S1_a_at	E	E	CN519923	CN519923	scaffold_1:12257850-12261838(+) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT5G47310.1	PPPDE putative thiol peptidase family protein 	LOC_Os03g01130.2	"ethylene-responsive element-binding protein, putative, expressed"	Medtr5g013150.1	"Protein of unknown function DUF862, eukaryotic "	NA	NA	NA
PtpAffx.2548.1.A1_at	E	E	CV259452	CV259452	NA	NA	Q9XG54	12-oxophytodienoate reductase 1	AT1G76690.1	12-oxophytodienoate reductase 2 	LOC_Os06g11290.1	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006930.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	NA	NA
PtpAffx.25837.1.S1_at	E	E	CN549555	CN549555	scaffold_11:8241581-8241957(+) (11)	NA	NA	NA	AT4G18600.1	SCAR family protein 	NA	NA	Medtr4g134650.1	hypothetical protein 	NA	NA	NA
PtpAffx.26085.1.S1_at	E	E	BU884670	BU884670	NA	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os11g04980.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.2	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.2628.1.S1_at	E	E	DN497324	DN497324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26296.1.S1_at	E	E	CV272420	CV272420	NA	NA	NA	NA	AT1G61690.1	phosphoinositide binding 	LOC_Os03g46710.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.26325.1.A1_at	E	E	CK093676	CK093676	NA	NA	Q9FF12	Flavin-containing monooxygenase FMO GS-OX-like 9	AT5G07800.1	Flavin-binding monooxygenase family protein 	LOC_Os07g02100.2	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr5g012290.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	NA	NA	NA
PtpAffx.26358.1.S1_at	E	E	CK091603	CK091603	scaffold_1:7888037-7888403(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26366.1.S1_at	E	E	BP935660	BP935660	NA	NA	NA	NA	AT5G06780.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.2	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	NA	NA	NA
PtpAffx.26428.1.A1_at	E	E	CK097664	CK097664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26443.1.A1_at	E	E	CV273936	CV273936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26541.1.A1_at	E	E	CK093453	CK093453	NA	NA	Q56X72	Reticulon-like protein B21	AT5G58000.1	Reticulon family protein 	LOC_Os08g17870.1	"reticulon domain containing protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.26549.1.A1_at	E	E	CK092412	CK092412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26558.2.S1_s_at	E	E	CV253347	CV253347	NA	NA	NA	NA	AT3G26380.1	Melibiase family protein 	LOC_Os01g33420.1	"glycosyl hydrolase family protein 27, putative, expressed"	Medtr2g114520.1	"Glycoside hydrolase, clan GH-D; Ricin B lectin "	NA	NA	NA
PtpAffx.26560.1.A1_at	E	E	CK091776	CK091776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26585.1.A1_at	E	E	CV251018	CV251018	NA	NA	Q9FL51	Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940	AT5G06940.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os01g53920.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g111090.1	Protein kinase 	NA	NA	NA
PtpAffx.26596.1.S1_at	E	E	CK090826	CK090826	scaffold_1:23602641-23602909(-) (9)//scaffold_11:821178-821569(-) (10)//scaffold_16:10869155-10869423(-) (11)//scaffold_2124:3803-4066(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26626.1.A1_at	E	E	CK089577	CK089577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26634.1.A1_at	E	E	CK088385	CK088385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26755.1.S1_at	E	E	CK318492	CK318492	scaffold_6:11680519-11686041(-) (10)	NA	Q940X7	RING-box protein 1a	AT5G20570.1	RING-box 1 	LOC_Os01g01700.1	"anaphase-promoting complex subunit 11, putative, expressed"	Medtr2g103850.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.26773.1.A1_at	E	E	CV251450	CV251450	scaffold_9:4709075-4709607(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2682.1.A1_at	E	E	AY378089.1	AY378089.1	NA	NA	P32765	21 kDa seed protein	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr3g137680.1	Kunitz inhibitor ST1-like 	NA	NA	NA
PtpAffx.2707.1.S1_at	E	E	DN499727	DN499727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2710.4.A1_at	E	E	BP931532	BP931532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2716.1.A1_at	E	E	CK092513	CK092513	NA	NA	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.2	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	NA	NA
PtpAffx.27190.1.S1_at	E	E	CA927752	CA927752	NA	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	NA	NA	NA
PtpAffx.27201.3.S1_at	E	E	CV225601	CV225601	NA	NA	Q5R4M2	Serine/threonine-protein kinase ULK4	AT4G19670.2	RING/U-box superfamily protein 	LOC_Os12g43560.1	"zinc finger, putative, expressed"	Medtr2g034440.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	NA	NA
PtpAffx.27257.1.S1_at	E	E	BU825574	BU825574	NA	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21710.1	plant protein of unknown function domain containing protein	Medtr6g009850.1	Plant protein of unknown function 	NA	NA	NA
PtpAffx.27328.1.S1_at	E	E	DN492487	DN492487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.27724.1.S1_at	E	E	BU873611	BU873611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2791.2.S1_at	E	E	CV233055	CV233055	NA	NA	Q8VYK6	40S ribosomal protein S4-3	AT5G07090.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	NA	NA
PtpAffx.27933.1.S1_at	E	E	DN489600	DN489600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.27983.1.S1_at	E	E	DN498846	DN498846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.283.16.S1_at	E	E	CV226238	CV226238	NA	NA	NA	NA	AT5G25265.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g08180.1	expressed protein	Medtr8g042980.2	hypothetical protein 	NA	NA	NA
PtpAffx.2848.2.A1_at	E	E	CV265624	CV265624	scaffold_16:11339737-11340126(-) (11)	NA	Q39196	Probable aquaporin PIP1-4	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.28501.1.S1_at	E	E	AJ769231	AJ769231	NA	NA	NA	NA	AT3G56290.1	unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g60830.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.2874.1.S1_at	E	E	CK097518	CK097518	NA	NA	Q39024	Mitogen-activated protein kinase 4	AT4G01370.1	MAP kinase 4 	LOC_Os10g38950.1	"CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235567_72.1	"Serine/threonine protein kinase, active site AC235567.1 262008-267145 F EGN_Mt090430 200"	NA	NA	NA
PtpAffx.28759.1.S1_at	E	E	BU896255	BU896255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28867.1.A1_at	E	E	BP932939	BP932939	NA	NA	Q6AUR2	Nitrogen regulatory protein P-II homolog	AT4G01900.1	GLNB1 homolog 	LOC_Os05g04220.1	"nitrogen regulatory protein P-II, putative, expressed"	Medtr7g133450.1	Nitrogen regulatory protein P-II; 	NA	NA	NA
PtpAffx.28870.1.S1_at	E	E	DN488410	DN488410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28877.1.S1_at	E	E	DN488211	DN488211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28882.1.S1_at	E	E	DN485004	DN485004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28933.1.S1_at	E	E	DN495691	DN495691	NA	NA	O81154	Cysteine synthase	AT5G28020.6	cysteine synthase D2 	LOC_Os01g74650.3	"cysteine synthase, mitochondrial precursor, putative, expressed"	Medtr1g096610.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	NA	NA	NA
PtpAffx.28935.1.S1_at	E	E	BU813285	BU813285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28961.1.S1_at	E	E	DN485072	DN485072	scaffold_9:699339-699706(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29005.1.S1_at	E	E	BU870026	BU870026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29017.1.A1_at	E	E	DN492088	DN492088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29029.1.S1_at	E	E	DN501771	DN501771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29038.1.S1_at	E	E	DN501502	DN501502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29047.1.A1_at	E	E	DN491033	DN491033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29066.1.A1_at	E	E	DN490383	DN490383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29073.1.S1_at	E	E	DN499869	DN499869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.291.10.S1_at	E	E	CV272644	CV272644	NA	NA	P27592	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08060.1	"elongation factor Tu, putative, expressed"	Medtr8g016100.1	"Translation elongation factor, GTP-binding "	NA	NA	NA
PtpAffx.291.5.S1_at	E	E	CV227140	CV227140	NA	NA	P13447	Anther-specific protein LAT52	AT4G08685.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g22590.1	"POEI24 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	CU651566_3.1	Pollen Ole e 1 allergen and extensin CU651566.9 19800-21791 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.29109.1.A1_at	E	E	DN488308	DN488308	scaffold_3:1533666-1534048(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29113.1.S1_at	E	E	DN488186	DN488186	NA	NA	NA	NA	NA	NA	LOC_Os03g25890.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.29121.1.S1_at	E	E	DN497568	DN497568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29151.2.A1_at	E	E	BP930394	BP930394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29153.1.S1_at	E	E	DN496362	DN496362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29168.1.S1_at	E	E	BU889308	BU889308	NA	NA	NA	NA	AT5G53020.1	Ribonuclease P protein subunit P38-related 	LOC_Os01g36970.1	expressed protein	Medtr3g123740.1	hypothetical protein 	NA	NA	NA
PtpAffx.29171.1.S1_at	E	E	DN486239	DN486239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29176.1.A1_at	E	E	DN485905	DN485905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29180.1.S1_at	E	E	CX656046	CX656046	NA	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G01980.1	FAD-binding Berberine family protein 	LOC_Os06g35560.1	"reticuline oxidase-like protein precursor, putative, expressed"	AC147501_7.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 20889-22593 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.29184.1.A1_at	E	E	DN485403	DN485403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29211.1.S1_s_at	E	E	CK317782	CK317782	scaffold_5:8113290-8116945(-) (11)	NA	Q9FHW7	SKP1-like protein 1B	AT5G42190.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 	LOC_Os09g36830.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr5g022610.1	SKP1 component 	NA	NA	NA
PtpAffx.29384.2.A1_at	E	E	CA825858	CA825858	NA	NA	Q9FYE4	Probable calcium-binding protein CML50	AT5G04170.1	Calcium-binding EF-hand family protein 	LOC_Os12g04240.1	"peflin, putative, expressed"	AC233655_5.1	Calcium-binding EF-hand AC233655.2 47904-49672 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.29457.5.A1_at	E	E	CV227612	CV227612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2948.1.S1_at	E	E	CV242740	CV242740	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g008080.1	hypothetical protein 	NA	NA	NA
PtpAffx.29654.1.S1_at	E	E	BU833431	BU833431	NA	NA	Q42563	Adenine phosphoribosyltransferase 2	AT5G11160.1	adenine phosphoribosyltransferase 5 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr3g137510.1	Phosphoribosyltransferase 	NA	NA	NA
PtpAffx.3004.1.S1_at	E	E	DN488750	DN488750	NA	NA	NA	NA	AT5G64230.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os02g51820.1	expressed protein	Medtr2g009020.1	hypothetical protein 	NA	NA	NA
PtpAffx.3005.1.S1_at	E	E	CX653942	CX653942	NA	NA	NA	NA	AT5G03510.1	C2H2-type zinc finger family protein 	LOC_Os02g57790.1	ZOS2-19 - C2H2 zinc finger protein	Medtr4g076150.1	"Zinc finger, C2H2-type "	NA	NA	NA
PtpAffx.30129.1.S1_at	E	E	CK090649	CK090649	scaffold_9:8269851-8270211(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30179.1.S1_a_at	E	E	CV263137	CV263137	scaffold_17:7200039-7201240(-) (11)	NA	Q84LH3	Werner Syndrome-like exonuclease	AT4G13870.2	Werner syndrome-like exonuclease 	LOC_Os04g03990.1	"3-5 exonuclease domain-containing protein, putative, expressed"	Medtr3g104890.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.3018.1.A1_at	E	E	BI120137	BI120137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30211.1.S1_at	E	E	CV245196	CV245196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30246.1.A1_at	E	E	CV267148	CV267148	scaffold_8:7548730-7549227(-) (9)	NA	Q5RKH1	Serine/threonine-protein kinase PRP4 homolog	AT3G25840.2	Protein kinase superfamily protein 	LOC_Os12g44330.2	"serine/threonine-protein kinase PRP4, putative, expressed"	Medtr5g090140.1	Protein kinase 	NA	NA	NA
PtpAffx.30291.1.A1_at	E	E	CV283979	CV283979	NA	NA	Q40163	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	NA	NA	NA
PtpAffx.30315.1.A1_at	E	E	CV282368	CV282368	NA	NA	P05478	18.5 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr4g124600.1	HSP20-like chaperone 	NA	NA	NA
PtpAffx.30454.1.A1_at	E	E	CK091554	CK091554	scaffold_6:13501738-13502013(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30613.1.A1_at	E	E	CV244076	CV244076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30628.1.A1_at	E	E	CV225785	CV225785	scaffold_17:3774263-3774586(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.308.1.A2_at	E	E	CV242048	CV242048	scaffold_15:11763769-11764325(-) (11)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	NA	NA	NA
PtpAffx.30875.2.S1_at	E	E	CV225928	CV225928	scaffold_10:17370470-17370507(-) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	NA	NA	NA
PtpAffx.30875.2.S1_s_at	E	E	CV225928	CV225928	scaffold_10:17370494-17370726(-) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	NA	NA	NA
PtpAffx.309.4.S1_at	E	E	BP934144	BP934144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3096.3.S1_at	E	E	DN485946	DN485946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30964.2.A1_at	E	E	CV229568	CV229568	NA	NA	NA	NA	AT4G01510.1	Arv1-like protein 	LOC_Os03g57090.1	"arv1, putative, expressed"	Medtr7g106480.1	Arv1-like protein 	NA	NA	NA
PtpAffx.3103.1.A1_at	E	E	BU885954	BU885954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31048.1.A1_at	E	E	CV250786	CV250786	NA	NA	NA	NA	AT5G52190.1	Sugar isomerase (SIS) family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31068.1.A1_at	E	E	CV249813	CV249813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31069.1.A1_at	E	E	CV249790	CV249790	NA	NA	P46266	14-3-3-like protein	AT1G78300.1	general regulatory factor 2 	LOC_Os02g36974.6	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	NA	NA
PtpAffx.31076.1.A1_at	E	E	CV249324	CV249324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31078.1.A1_at	E	E	CV249066	CV249066	NA	NA	NA	NA	AT2G20930.1	SNARE-like superfamily protein 	LOC_Os09g36976.1	"trafficking protein particle complex subunit, putative, expressed"	Medtr7g092580.1	Longin-like 	NA	NA	NA
PtpAffx.31082.1.A1_at	E	E	CV248789	CV248789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31089.1.A1_at	E	E	CV248414	CV248414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31122.1.A1_at	E	E	CV246590	CV246590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31147.1.A1_at	E	E	CV245427	CV245427	NA	NA	Q5U1Z2	Trafficking protein particle complex subunit 3	AT5G54750.1	Transport protein particle (TRAPP) component 	LOC_Os07g44790.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr4g110910.1	"Transport protein particle (TRAPP) component, Bet3 "	NA	NA	NA
PtpAffx.31178.1.A1_at	E	E	CV244195	CV244195	scaffold_17:783145-783853(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31195.1.A1_at	E	E	CV243823	CV243823	NA	NA	Q8T3U2	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	NA	NA	NA
PtpAffx.31198.1.S1_at	E	E	CV243798	CV243798	scaffold_17:9703480-9708365(-) (11)	NA	Q8W575	COP9 signalosome complex subunit 3	AT5G14250.1	Proteasome component (PCI) domain protein 	LOC_Os08g02550.1	"proteasome subunit, putative, expressed"	Medtr6g025220.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	NA	NA	NA
PtpAffx.31216.1.A1_at	E	E	CV255285	CV255285	scaffold_2:18639215-18639699(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31218.1.A1_at	E	E	CV243238	CV243238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31264.2.S1_a_at	E	E	BU831849	BU831849	NA	NA	Q8GV05	Transcription factor TRY	AT5G53200.1	Homeodomain-like superfamily protein 	LOC_Os01g43180.1	"MYB family transcription factor, putative"	Medtr5g009470.1	Homeodomain-related; 	NA	NA	NA
PtpAffx.31264.2.S1_at	E	E	BU831849	BU831849	NA	NA	Q8GV05	Transcription factor TRY	AT5G53200.1	Homeodomain-like superfamily protein 	LOC_Os01g43180.1	"MYB family transcription factor, putative"	Medtr5g009470.1	Homeodomain-related; 	NA	NA	NA
PtpAffx.31267.1.A1_at	E	E	CV241546	CV241546	NA	NA	P34105	NADP-dependent malic enzyme	AT5G25880.1	NADP-malic enzyme 3 	LOC_Os05g09440.1	"NADP-dependent malic enzyme, chloroplast precursor, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	NA	NA
PtpAffx.31269.1.A1_at	E	E	CV241511	CV241511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3128.1.S1_at	E	E	DN493238	DN493238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3134.2.S1_a_at	E	E	CV242907	CV242907	scaffold_1:4559906-4560364(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31351.1.A1_at	E	E	CV239042	CV239042	NA	NA	P46522	Late embryogenesis abundant protein Lea5-D	AT4G02380.1	senescence-associated gene 21 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31364.1.A1_at	E	E	CV238498	CV238498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31494.1.A1_at	E	E	CF232962	CF232962	NA	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	NA	NA	NA
PtpAffx.31510.1.A1_at	E	E	CV232582	CV232582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3155.1.A1_at	E	E	CV243801	CV243801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31556.1.A1_at	E	E	CV230706	CV230706	scaffold_15:5436244-5436803(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31574.1.A1_at	E	E	CV255960	CV255960	scaffold_2:6164383-6164423(+) (11)	NA	Q9CA23	Ubiquitin-fold modifier 1	AT5G41970.1	Metal-dependent protein hydrolase 	LOC_Os02g46150.1	"GAMM1 protein-like, putative, expressed"	Medtr5g065330.1	Protein of unknown function UPF0185 	NA	NA	NA
PtpAffx.31574.2.A1_at	E	E	AJ777282	AJ777282	NA	NA	Q94DM8	Ubiquitin-fold modifier 1	AT1G77710.1	"CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). "	LOC_Os01g73140.1	"ubiquitin-fold modifier 1 precursor, putative, expressed"	Medtr5g065330.1	Protein of unknown function UPF0185 	NA	NA	NA
PtpAffx.31638.1.A1_at	E	E	CV227478	CV227478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31662.1.A1_at	E	E	CV226361	CV226361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31690.1.S1_s_at	E	E	CV131884	CV131884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31690.2.S1_at	E	E	BU867616	BU867616	scaffold_17:537098-537345(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3173.1.S1_a_at	E	E	DN483936	DN483936	scaffold_11:17064887-17065130(-) (11)	NA	Q63871	"DNA-directed RNA polymerases I, II, and III subunit RPABC4"	AT4G38580.1	farnesylated protein 6 	LOC_Os04g17100.2	"heavy metal-associated domain containing protein, expressed"	Medtr4g098440.1	Heavy metal transport/detoxification protein 	NA	NA	NA
PtpAffx.3173.1.S1_x_at	E	E	DN483936	DN483936	scaffold_11:17063621-17065128(-) (10)	NA	Q63871	"DNA-directed RNA polymerases I, II, and III subunit RPABC4"	AT4G38580.1	farnesylated protein 6 	LOC_Os04g17100.2	"heavy metal-associated domain containing protein, expressed"	Medtr4g098440.1	Heavy metal transport/detoxification protein 	NA	NA	NA
PtpAffx.3173.7.S1_a_at	E	E	BU826525	BU826525	scaffold_8:3809297-3809797(+) (11)	NA	O20252	"Sedoheptulose-1,7-bisphosphatase, chloroplastic"	AT3G55800.1	sedoheptulose-bisphosphatase 	NA	NA	Medtr3g093130.1	"Inositol phosphatase/fructose-1,6-bisphosphatase; Glycoside hydrolase, family 5 "	NA	NA	NA
PtpAffx.3214.1.S1_at	E	E	BU837030	BU837030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3214.2.A1_at	E	E	DN489929	DN489929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3231.1.S1_at	E	E	DN498952	DN498952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32818.4.A1_a_at	E	E	CV242662	CV242662	scaffold_3:17347406-17347503(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32818.4.A1_at	E	E	CV242662	CV242662	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32961.1.S1_at	E	E	CK103930	CK103930	NA	NA	Q9FID6	Probable receptor-like protein kinase At5g39020	AT5G38280.1	PR5-like receptor kinase 	LOC_Os01g02360.1	"resistance-related receptor-like kinase, putative, expressed"	Medtr1g034670.1	Protein kinase 	NA	NA	NA
PtpAffx.32969.1.A1_at	E	E	CK093750	CK093750	NA	NA	Q94EJ2	Histone deacetylase 8	AT1G08460.1	histone deacetylase 8 	LOC_Os05g36920.1	"histone deacetylase, putative, expressed"	Medtr2g105140.1	Histone deacetylase superfamily 	NA	NA	NA
PtpAffx.32987.1.A1_at	E	E	CK092180	CK092180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32997.1.A1_at	E	E	CK091660	CK091660	NA	NA	NA	NA	AT2G31320.1	poly(ADP-ribose) polymerase 2 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32999.1.A1_s_at	E	E	CK101691	CK101691	scaffold_3:7737468-7738090(+) (11)	NA	NA	NA	AT1G17450.2	B-block binding subunit of TFIIIC 	LOC_Os02g42200.3	"transcription factor-related, putative, expressed"	Medtr3g012740.1	"Bacterial regulatory protein, MarR "	NA	NA	NA
PtpAffx.33006.1.A1_at	E	E	CK091316	CK091316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33012.1.A1_at	E	E	CK091047	CK091047	NA	NA	Q9LVC8	"Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial"	AT5G57300.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g74520.2	"methyltransferase domain containing protein, putative, expressed"	Medtr3g058820.1	UbiE/COQ5 methyltransferase 	NA	NA	NA
PtpAffx.33033.1.A1_at	E	E	CK090138	CK090138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33328.1.A1_at	E	E	CV239473	CV239473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3337.2.S1_at	E	E	DN485319	DN485319	NA	NA	NA	NA	AT3G05330.1	cyclin family 	NA	NA	Medtr7g139290.1	"microtubule binding protein, putative "	NA	NA	NA
PtpAffx.33375.2.S1_at	E	E	BU814303	BU814303	NA	NA	NA	NA	AT1G75980.1	Single hybrid motif superfamily protein 	LOC_Os02g02810.1	expressed protein	Medtr3g157040.1	Single hybrid motif 	NA	NA	NA
PtpAffx.33433.1.S1_at	E	E	CA820801	CA820801	NA	NA	P12173	Uncharacterized protein ycf68	NA	NA	LOC_Os10g38196.1	"uncharacterized protein ycf68, putative"	Medtr1g019550.1	hypothetical protein 	NA	NA	NA
PtpAffx.33450.1.S1_at	E	E	CV244651	CV244651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33700.2.S1_a_at	E	E	BP932786	BP932786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3381.1.S1_at	E	E	DN493070	DN493070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3388.1.S1_at	E	E	DN502843	DN502843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33895.1.S1_at	E	E	CV275710	CV275710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3392.1.S1_at	E	E	BU895959	BU895959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33924.1.S1_at	E	E	CV243882	CV243882	NA	NA	Q9LND7	F-box protein SKIP16	AT1G06110.1	SKP1/ASK-interacting protein 16 	LOC_Os11g16390.1	expressed protein	Medtr4g092470.1	Cyclin-like F-box; ApaG 	NA	NA	NA
PtpAffx.33924.2.S1_at	E	E	CV255680	CV255680	scaffold_17:4369111-4373257(+) (9)	NA	Q9LND7	F-box protein SKIP16	AT1G06110.1	SKP1/ASK-interacting protein 16 	LOC_Os11g16390.3	expressed protein	Medtr4g092470.1	Cyclin-like F-box; ApaG 	NA	NA	NA
PtpAffx.3395.1.A1_at	E	E	DN492440	DN492440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34022.1.A1_at	E	E	CV226755	CV226755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34085.1.A1_at	E	E	BU876054	BU876054	scaffold_1:42191703-42191879(+) (11)//scaffold_11:14874740-14874860(-) (9)//scaffold_11:14882658-14882829(-) (9)//scaffold_12:5299219-5299394(-) (10)//scaffold_14:16270514-16278725(-) (10)//scaffold_14:16278549-16278669(-) (9)//scaffold_14:17565974-17566149(+) (10)//scaffold_17:1695758-1695878(-) (9)//scaffold_19:1921752-1921872(+) (9)//scaffold_7:7555292-7555467(+) (10)//scaffold_7:7563272-7563447(+) (9)//scaffold_8:167875-168050(+) (10)//scaffold_8:17936115-17936235(+) (9)//scaffold_8:17944054-17944174(+) (9)//scaffold_8:18755894-18756014(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34101.1.S1_at	E	E	DN501612	DN501612	scaffold_1:28898077-28898631(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3429.1.S1_at	E	E	CF235031	CF235031	NA	NA	NA	NA	AT3G18670.1	Ankyrin repeat family protein 	NA	NA	Medtr5g028530.1	"ankyrin repeat family protein, related "	NA	NA	NA
PtpAffx.34328.1.A1_at	E	E	CV275415	CV275415	scaffold_16:13625589-13625992(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34333.1.S1_at	E	E	BU834655	BU834655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3437.1.S1_a_at	E	E	DN491160	DN491160	scaffold_8:2216942-2216983(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3437.1.S1_at	E	E	DN491160	DN491160	scaffold_8:2216969-2217404(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34376.1.S1_at	E	E	CV273296	CV273296	scaffold_1:7316602-7318702(-) (11)	NA	P42748	Ubiquitin-conjugating enzyme E2 4	AT5G41340.1	ubiquitin conjugating enzyme 4 	LOC_Os10g31000.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g125340.2	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.3449.1.S1_at	E	E	CV266804	CV266804	NA	NA	Q5ZJH6	Serine/threonine-protein kinase ULK3	AT1G49180.2	protein kinase family protein 	LOC_Os04g58990.1	"CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g144060.1	Protein kinase 	NA	NA	NA
PtpAffx.34515.1.S1_at	E	E	CK096559	CK096559	NA	NA	Q7XA42	Putative disease resistance protein RGA1	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os03g20840.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g005900.1	"Transcription factor, MADS-box; NB-ARC "	NA	NA	NA
PtpAffx.3457.1.A1_at	E	E	DN490213	DN490213	NA	NA	Q03666	Probable glutathione S-transferase	AT1G17180.1	glutathione S-transferase TAU 25 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	NA	NA	NA
PtpAffx.3459.4.S1_at	E	E	CV264923	CV264923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34645.1.S1_at	E	E	BU812302	BU812302	NA	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.7	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr7g064510.1	Lissencephaly type-1-like homology motif; WD40-like; 	NA	NA	NA
PtpAffx.3471.1.S1_at	E	E	DN499632	DN499632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3472.1.A1_at	E	E	DN489640	DN489640	NA	NA	NA	NA	AT5G53440.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g124190.1	hypothetical protein 	NA	NA	NA
PtpAffx.3477.1.A1_at	E	E	BP933638	BP933638	NA	NA	Q9FWR2	Pyrophosphate-energized membrane proton pump 3	AT1G16780.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g33490.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	NA	NA	NA
PtpAffx.3477.3.A1_at	E	E	CV230833	CV230833	NA	NA	Q9FWR2	Pyrophosphate-energized membrane proton pump 3	AT1G16780.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g33490.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr1g117100.1	hypothetical protein 	NA	NA	NA
PtpAffx.34813.1.S1_at	E	E	CV225376	CV225376	NA	NA	NA	NA	AT2G45060.1	Uncharacterised conserved protein UCP022280 	LOC_Os02g01450.1	expressed protein	Medtr4g115230.1	hypothetical protein 	NA	NA	NA
PtpAffx.34823.1.S1_at	E	E	CK103514	CK103514	NA	NA	P48603	F-actin-capping protein subunit beta	AT1G71790.1	Subunits of heterodimeric actin filament capping protein Capz superfamily 	LOC_Os03g26450.1	"F-actin-capping protein subunit beta, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.3484.2.S1_at	E	E	CV244021	CV244021	NA	NA	Q84Y18	CAX-interacting protein 4	AT2G28910.1	CAX interacting protein 4 	LOC_Os09g01640.1	"CAX-interacting protein 4, putative, expressed"	Medtr1g064960.1	"Zinc finger, CCHC-type "	NA	NA	NA
PtpAffx.3488.1.S1_s_at	E	E	BU864250	BU864250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3499.1.S1_at	E	E	CK112238	CK112238	NA	NA	Q14FC5	DNA-directed RNA polymerase subunit alpha	ATCG00740.1	RNA polymerase subunit alpha 	LOC_Os10g21328.1	"DNA-directed RNA polymerase subunit alpha, putative"	Medtr4g042510.1	"RNA polymerase, RBP11-like "	NA	NA	NA
PtpAffx.3502.1.S1_at	E	E	CA821290	CA821290	NA	NA	P38450	Uncharacterized mitochondrial protein ymf1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35127.3.S1_at	E	E	CK114887	CK114887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35136.1.S1_at	E	E	DN493145	DN493145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35150.1.S1_at	E	E	DN502522	DN502522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35201.1.S1_at	E	E	DN490798	DN490798	NA	NA	NA	NA	AT1G07650.2	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090600.1	Protein kinase 	NA	NA	NA
PtpAffx.35209.1.S1_at	E	E	BU810187	BU810187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35238.1.S1_at	E	E	BU831279	BU831279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35239.1.S1_at	E	E	DN489261	DN489261	NA	NA	NA	NA	AT3G04300.1	RmlC-like cupins superfamily protein 	LOC_Os02g40700.1	"enzyme of the cupin superfamily protein, putative, expressed"	Medtr7g117610.1	"Cupin, RmlC-type "	NA	NA	NA
PtpAffx.35265.1.S1_at	E	E	DN487919	DN487919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35386.1.S1_at	E	E	DN503110	DN503110	scaffold_10:12788174-12788435(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35401.1.A1_at	E	E	DN492426	DN492426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35402.1.S1_at	E	E	DN492326	DN492326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35403.1.S1_at	E	E	BU892277	BU892277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35419.1.A1_at	E	E	DN491931	DN491931	scaffold_1:38000752-38000856(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35426.1.S1_at	E	E	DN501693	DN501693	scaffold_7:581398-582038(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35427.1.A1_at	E	E	DN491740	DN491740	scaffold_1:10335468-10335871(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35437.1.A1_at	E	E	DN491506	DN491506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35442.1.A1_at	E	E	DN491311	DN491311	NA	NA	P27608	"Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic"	AT4G39980.1	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 	LOC_Os08g37790.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	NA	NA	NA
PtpAffx.35476.1.S1_at	E	E	DN489366	DN489366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35499.1.A1_at	E	E	DN487863	DN487863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3555.1.A1_at	E	E	CV265074	CV265074	NA	NA	Q3E902	40S ribosomal protein S21-2	AT5G27700.1	Ribosomal protein S21e  	LOC_Os03g46490.1	"40S ribosomal protein S21, putative, expressed"	Medtr7g084190.1	Ribosomal protein S21e 	NA	NA	NA
PtpAffx.3555.2.A1_at	E	E	CV228412	CV228412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35553.1.A1_at	E	E	DN485872	DN485872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35556.1.A1_at	E	E	DN485657	DN485657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35569.1.S1_at	E	E	DN494567	DN494567	scaffold_3:19562298-19562599(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35609.1.S1_at	E	E	CK094247	CK094247	NA	NA	NA	NA	AT3G46580.1	methyl-CPG-binding domain protein 5 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3563.1.A1_at	E	E	DN485775	DN485775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3564.1.S1_at	E	E	DN485739	DN485739	NA	NA	Q9FG71	UPF0172 protein At5g55940	AT5G55940.1	Uncharacterised protein family (UPF0172) 	LOC_Os04g20230.1	"neighbor of COX4, putative, expressed"	Medtr5g103870.1	Protein of unknown function UPF0172 	NA	NA	NA
PtpAffx.3565.1.A1_at	E	E	DN485735	DN485735	NA	NA	P02723	"ADP,ATP carrier protein"	AT3G08580.2	ADP/ATP carrier 1 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr2g117590.1	Mitochondrial substrate carrier 	NA	NA	NA
PtpAffx.3577.1.S1_at	E	E	BU876213	BU876213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3597.1.S1_at	E	E	CF937081	CF937081	NA	NA	P13254	Methionine gamma-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	NA	NA	NA
PtpAffx.36560.1.S1_at	E	E	CV273795	CV273795	NA	NA	P83948	Pectinesterase 3	NA	NA	NA	NA	Medtr8g026730.2	Pectinesterase; Pectinesterase inhibitor 	NA	NA	NA
PtpAffx.36845.2.S1_at	E	E	CF234201	CF234201	NA	NA	Q43857	Acid beta-fructofuranosidase	AT1G12240.1	Glycosyl hydrolases family 32 protein 	LOC_Os04g45290.1	"glycosyl hydrolases, putative, expressed"	Medtr8g106250.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	NA	NA	NA
PtpAffx.36951.1.S1_at	E	E	CV264312	CV264312	NA	NA	Q9SSF8	Calcium-dependent protein kinase 30	AT1G74740.1	calcium-dependent protein kinase 30 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3723.1.S1_at	E	E	BP932865	BP932865	NA	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	NA	NA	NA
PtpAffx.3724.2.A1_at	E	E	BP935990	BP935990	NA	NA	NA	NA	AT1G56600.1	galactinol synthase 2 	LOC_Os07g48830.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	NA	NA
PtpAffx.37304.1.A1_at	E	E	CV256961	CV256961	NA	NA	NA	NA	NA	NA	LOC_Os07g34780.1	"ankyrin repeat domain-containing protein, putative"	NA	NA	NA	NA	NA
PtpAffx.374.5.S1_at	E	E	CV245835	CV245835	NA	NA	NA	NA	AT4G01710.1	ARP2/3 complex 16 kDa subunit (p16-Arc) 	LOC_Os11g35360.1	"actin polymerization factor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.37435.1.A1_at	E	E	CV252295	CV252295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37471.1.A1_at	E	E	CV251027	CV251027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37476.1.A1_s_at	E	E	CV250745	CV250745	scaffold_163:9821-10005(-) (11)//scaffold_19:14191867-14192051(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37489.1.A1_at	E	E	CV250199	CV250199	scaffold_1:3019363-3019680(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37497.1.A1_at	E	E	CV249619	CV249619	NA	NA	Q9M2F1	40S ribosomal protein S27-2	AT3G61110.1	ribosomal protein S27 	LOC_Os04g27860.1	"40S ribosomal protein S27, putative"	Medtr2g019110.1	Ribosomal protein S27E 	NA	NA	NA
PtpAffx.37524.2.S1_at	E	E	DN489186	DN489186	NA	NA	NA	NA	AT2G25920.1	BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (TAIR:AT2G25910.2); Has 131 Blast hits to 125 proteins in 54 species: Archae - 0; Bacteria - 50; Metazoa - 12; Fungi - 12; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). 	LOC_Os05g06420.1	expressed protein	Medtr1g107460.1	hypothetical protein 	NA	NA	NA
PtpAffx.37535.1.A1_at	E	E	CV247662	CV247662	NA	NA	Q6P8E9	NHP2-like protein 1	AT5G20160.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os03g13800.1	"ribosomal protein L7Ae, putative, expressed"	Medtr8g119890.1	Ribosomal protein L7AE 	NA	NA	NA
PtpAffx.37593.1.A1_at	E	E	CV245321	CV245321	scaffold_10:1746099-1746539(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37623.1.A1_at	E	E	DN497954	DN497954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37631.1.A1_at	E	E	CV244218	CV244218	NA	NA	P00400	Cytochrome c oxidase subunit 1	ATMG01360.1	cytochrome  oxidase 	LOC_Os12g33946.1	"cytochrome c oxidase subunit 1, putative"	Medtr1g006730.1	"Cytochrome c oxidase, subunit I "	NA	NA	NA
PtpAffx.37646.2.A1_at	E	E	CV243599	CV243599	NA	NA	P49045	Vacuolar-processing enzyme	AT1G62710.1	beta vacuolar processing enzyme 	LOC_Os02g43010.1	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr8g106310.1	"Peptidase C13, legumain "	NA	NA	NA
PtpAffx.37656.1.A1_at	E	E	CV243316	CV243316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37661.1.A1_at	E	E	CV243900	CV243900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37675.1.A1_at	E	E	CV242518	CV242518	NA	NA	Q9NJH0	Elongation factor 1-gamma	AT1G57720.2	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.2	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	NA	NA	NA
PtpAffx.37688.1.A1_at	E	E	CV242260	CV242260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37692.1.A1_a_at	E	E	CV242066	CV242066	NA	NA	Q96Q06	Perilipin-4	AT3G53040.1	"late embryogenesis abundant protein, putative / LEA protein, putative "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37717.1.A1_at	E	E	CV241482	CV241482	scaffold_2:2949178-2949718(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37752.1.A1_at	E	E	CV240491	CV240491	scaffold_2:8869182-8869308(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37785.1.A1_at	E	E	CV239463	CV239463	NA	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT4G10490.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.37786.1.A1_at	E	E	CV239459	CV239459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37912.1.A1_at	E	E	CV234239	CV234239	NA	NA	Q9ATM8	Aquaporin PIP2-2	AT3G53420.2	plasma membrane intrinsic protein 2A 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr1g120820.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.37929.1.A1_at	E	E	CV233320	CV233320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37937.1.A1_at	E	E	CV232965	CV232965	scaffold_6:14990379-14990672(-) (10)	NA	NA	NA	AT5G28780.1	PIF1 helicase 	LOC_Os07g09300.1	"retrotransposon protein, putative, unclassified"	Medtr3g009580.1	"Protein of unknown function DUF889, eukaryote "	NA	NA	NA
PtpAffx.37986.1.A1_at	E	E	CV231144	CV231144	scaffold_3:16134294-16134673(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.38051.1.A1_at	E	E	CV228403	CV228403	scaffold_14:16088017-16088310(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.38054.1.A1_s_at	E	E	CA931944	CA931944	scaffold_3:9398300-9400604(+) (10)	NA	Q60HC8	Ubiquitin carboxyl-terminal hydrolase isozyme L1	AT4G17510.1	ubiquitin C-terminal hydrolase 3 	LOC_Os02g43760.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr8g105130.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	NA	NA	NA
PtpAffx.38067.1.A1_at	E	E	CV227758	CV227758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.38073.1.A1_at	E	E	CV249239	CV249239	scaffold_6:9342520-9342928(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.38093.1.A1_at	E	E	CV232598	CV232598	scaffold_7:5361938-5362367(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.38274.1.A1_a_at	E	E	CV257914	CV257914	scaffold_5:4845918-4846129(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.38274.2.A1_at	E	E	CV245302	CV245302	scaffold_5:4845854-4846379(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.388.2.S1_at	E	E	CV277605	CV277605	NA	NA	Q8RWE8	GDP-L-galactose phosphorylase 1	AT4G26850.1	mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase 	LOC_Os12g08810.1	"VTC2, putative, expressed"	Medtr5g100780.1	"VTC2-like protein, putative "	NA	NA	NA
PtpAffx.39048.1.S1_at	E	E	DN494026	DN494026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39055.1.S1_at	E	E	BU828448	BU828448	NA	NA	Q8GXJ4	Glutamate receptor 3.4	AT1G05200.2	glutamate receptor 3.4 	LOC_Os02g02540.1	"glutamate receptor, putative, expressed"	Medtr2g103920.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	NA	NA
PtpAffx.39357.1.S1_at	E	E	CK095977	CK095977	NA	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	NA	NA	NA
PtpAffx.39427.1.S1_at	E	E	CK093545	CK093545	NA	NA	NA	NA	AT5G13500.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g08180.1	expressed protein	Medtr8g042980.1	hypothetical protein 	NA	NA	NA
PtpAffx.39468.1.A1_at	E	E	CK091467	CK091467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39470.1.S1_at	E	E	CK091460	CK091460	NA	NA	Q9LJX0	ABC transporter B family member 19	AT3G28860.1	ATP binding cassette subfamily B19 	LOC_Os04g38570.1	"multidrug resistance protein, putative, expressed"	Medtr8g077990.1	"ABC transporter, transmembrane region, type 1 "	NA	NA	NA
PtpAffx.39492.1.A1_at	E	E	CK090785	CK090785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39504.1.A1_at	E	E	CK090513	CK090513	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39512.1.A1_at	E	E	CK090342	CK090342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39532.1.A1_at	E	E	CK089001	CK089001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39546.1.A1_at	E	E	CK087891	CK087891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39550.1.S1_at	E	E	CK087678	CK087678	NA	NA	NA	NA	AT5G22010.1	replication factor C1 	LOC_Os11g36390.1	"RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed"	NA	NA	NA	NA	NA
PtpAffx.39700.1.S1_at	E	E	CF229096	CF229096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4.3.A1_x_at	E	E	CV277108	CV277108	NA	NA	P16579	Acidic endochitinase WIN6	AT3G12500.1	basic chitinase 	LOC_Os05g33140.1	"CHIT5 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	NA	NA	NA
PtpAffx.40120.2.S1_at	E	E	BU880087	BU880087	scaffold_5:4913681-4917140(+) (10)	NA	NA	NA	AT3G62450.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g01574.1	expressed protein	Medtr2g055660.1	hypothetical protein 	NA	NA	NA
PtpAffx.40204.1.S1_at	E	E	DN493223	DN493223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.40224.1.S1_at	E	E	CV237138	CV237138	NA	NA	Q9SJL6	Membrin-11	AT2G36900.1	membrin 11 	LOC_Os03g45260.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr5g097640.1	Vesicle transport v-SNARE 	NA	NA	NA
PtpAffx.40278.1.S1_at	E	E	DN496589	DN496589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.40283.1.S1_at	E	E	CV271867	CV271867	scaffold_5:21729899-21730016(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4030.1.S1_at	E	E	CN549228	CN549228	NA	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os04g43540.1	"ribosomal protein L14, putative, expressed"	Medtr1g090300.1	Ribosomal protein L14 	NA	NA	NA
PtpAffx.4031.2.A1_at	E	E	CV254351	CV254351	NA	NA	NA	NA	AT1G29840.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g39790.2	"esterase/lipase/thioesterase, putative, expressed"	Medtr2g046090.1	"Esterase/lipase/thioesterase, identical "	NA	NA	NA
PtpAffx.4031.3.A1_at	E	E	BP932770	BP932770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4039.1.S1_at	E	E	CX658915	CX658915	NA	NA	O23714	Proteasome subunit beta type-2-A	AT3G22630.1	20S proteasome beta subunit D1 	LOC_Os03g48930.1	"peptidase, T1 family, putative, expressed"	Medtr5g007000.1	"20S proteasome, A and B subunits "	NA	NA	NA
PtpAffx.40510.1.S1_at	E	E	DN491913	DN491913	scaffold_6:1047438-1047923(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.40513.1.S1_at	E	E	BU879293	BU879293	scaffold_3:11575741-11577195(+) (9)	NA	NA	NA	AT5G07630.1	lipid transporters 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.40570.1.S1_at	E	E	DN501779	DN501779	NA	NA	NA	NA	AT4G01037.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os05g49610.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr3g105870.1	"Protein of unknown function DUF860, plant "	NA	NA	NA
PtpAffx.40916.1.S1_at	E	E	BU826440	BU826440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41127.1.S1_at	E	E	DN486049	DN486049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41463.1.S1_at	E	E	CK090992	CK090992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41501.2.S1_at	E	E	BU885311	BU885311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41659.1.A1_at	E	E	DN493100	DN493100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41708.1.S1_at	E	E	CV279789	CV279789	NA	NA	P05332	Uncharacterized N-acetyltransferase p20	AT3G22560.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g58010.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g140270.1	GCN5-related N-acetyltransferase 	NA	NA	NA
PtpAffx.41726.1.S1_at	E	E	DN490590	DN490590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41779.1.S1_at	E	E	DN487852	DN487852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41864.1.S1_at	E	E	DN485517	DN485517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41869.1.S1_at	E	E	BU869405	BU869405	scaffold_9:8545886-8546355(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41924.1.S1_at	E	E	CK113483	CK113483	NA	NA	NA	NA	AT1G27100.1	Actin cross-linking protein 	LOC_Os03g58740.1	expressed protein	Medtr8g074940.1	Actin-crosslinking proteins 	NA	NA	NA
PtpAffx.4196.2.A1_at	E	E	CV259713	CV259713	NA	NA	NA	NA	AT4G31180.2	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os02g04700.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr1g016920.1	"Aspartyl-tRNA synthetase bacterial/mitochondrial type; Nucleic acid-binding, OB-fold, subgroup "	NA	NA	NA
PtpAffx.42026.1.A1_at	E	E	CV269665	CV269665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42032.1.S1_at	E	E	DN488332	DN488332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42042.1.A1_at	E	E	DN487765	DN487765	scaffold_1:43742925-43742970(+) (11)//scaffold_65:7513-7581(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42094.1.A1_at	E	E	DN486019	DN486019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42141.1.S1_at	E	E	CK090701	CK090701	scaffold_1:46200084-46200433(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42147.1.S1_at	E	E	DN484014	DN484014	NA	NA	O82743	Agamous-like MADS-box protein AGL19	AT4G22950.1	AGAMOUS-like 19 	LOC_Os04g49150.1	"OsMADS17 - MADS-box family gene with MIKCc type-box, expressed"	Medtr7g014840.1	"Transcription factor, MADS-box; Transcription factor, K-box "	NA	NA	NA
PtpAffx.42587.1.S1_at	E	E	CX655616	CX655616	NA	NA	Q9SK55	NAC domain-containing protein 42	AT2G43000.1	NAC domain containing protein 42 	LOC_Os03g56580.1	"no apical meristem protein, putative, expressed"	Medtr5g098180.1	No apical meristem (NAM) protein 	NA	NA	NA
PtpAffx.42627.1.S1_at	E	E	CV235595	CV235595	NA	NA	P36910	Acidic endochitinase SE2	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr1g125760.1	"Glycoside hydrolase, chitinase active site "	NA	NA	NA
PtpAffx.4285.3.S1_a_at	E	E	CV257233	CV257233	scaffold_5:7196501-7196697(-) (11)	NA	Q84TE6	NAC domain-containing protein 21/22	AT1G56010.2	NAC domain containing protein 1 	LOC_Os06g46270.1	"no apical meristem protein, putative, expressed"	Medtr2g076740.1	No apical meristem (NAM) protein 	NA	NA	NA
PtpAffx.4286.15.S1_at	E	E	DN497257	DN497257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4303.1.A1_at	E	E	BP930597	BP930597	scaffold_10:15616266-15619921(-) (11)	NA	Q9C983	Probable WRKY transcription factor 57	AT1G69310.2	WRKY DNA-binding protein 57 	LOC_Os03g55080.1	"OsWRKY3 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g046700.1	DNA-binding WRKY 	NA	NA	NA
PtpAffx.43118.1.A1_at	E	E	CV267463	CV267463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43172.1.S1_at	E	E	CV245663	CV245663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43599.1.A1_a_at	E	E	CV243436	CV243436	scaffold_18:10885564-10888699(+) (11)	NA	NA	NA	AT2G18910.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g26370.2	"wiskott-Aldrich syndrome protein family member 2, putative, expressed"	Medtr8g129280.1	"hydroxyproline-rich glycoprotein family protein, putative "	NA	NA	NA
PtpAffx.43637.1.A1_at	E	E	CV225804	CV225804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43639.1.A1_a_at	E	E	CV242478	CV242478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43639.1.A1_at	E	E	CV242478	CV242478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4365.3.A1_at	E	E	CV266255	CV266255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43836.1.A1_at	E	E	CV256593	CV256593	NA	NA	NA	NA	AT4G30900.2	DNAse I-like superfamily protein 	LOC_Os05g19974.2	"endonuclease/exonuclease/phosphatase family protein, putative, expressed"	Medtr8g145310.1	hypothetical protein 	NA	NA	NA
PtpAffx.43837.1.A1_s_at	E	E	CV256587	CV256587	scaffold_11:5503614-5503661(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43848.1.S1_at	E	E	CV256217	CV256217	NA	NA	Q8W463	"50S ribosomal protein L19-1, chloroplastic"	AT5G11750.1	Ribosomal protein L19 family protein 	LOC_Os02g11030.1	"50S ribosomal protein L19, chloroplast precursor, putative, expressed"	Medtr5g013420.1	Ribosomal protein L19 	NA	NA	NA
PtpAffx.43896.1.A1_at	E	E	CV254358	CV254358	scaffold_2:7113282-7113682(+) (10)	NA	Q54WH6	Probable serine/threonine-protein phosphatase 2A activator 2	AT4G08960.1	phosphotyrosyl phosphatase activator (PTPA) family protein 	LOC_Os06g11640.1	"serine/threonine-protein phosphatase 2A activator 2, putative, expressed"	Medtr4g069930.1	"Phosphotyrosyl phosphatase activator, PTPA "	NA	NA	NA
PtpAffx.43963.1.A1_at	E	E	CV251170	CV251170	scaffold_8:6146060-6146969(+) (11)	NA	Q8GSA7	Calmodulin-binding transcription activator 3	AT2G22300.2	signal responsive 1 	LOC_Os03g27080.2	"calmodulin-binding transcription activator 2, putative, expressed"	Medtr2g008890.1	IQ calmodulin-binding region; CG-1 	NA	NA	NA
PtpAffx.43998.1.A1_at	E	E	CV249696	CV249696	NA	NA	O04354	Cytochrome b5	AT2G32720.1	cytochrome B5 isoform B 	LOC_Os05g01820.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr4g023560.1	Cytochrome b5 	NA	NA	NA
PtpAffx.44055.2.A1_at	E	E	CV247000	CV247000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44086.1.A1_at	E	E	CV245626	CV245626	NA	NA	Q9D3D9	"ATP synthase subunit delta, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44092.1.S1_at	E	E	BU812494	BU812494	scaffold_5:6966965-6967385(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44101.1.A1_at	E	E	CV244844	CV244844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44108.1.A1_at	E	E	CV244630	CV244630	NA	NA	Q8K5B3	Multiple coagulation factor deficiency protein 2 homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44122.1.A1_a_at	E	E	CV245592	CV245592	NA	NA	NA	NA	AT2G07715.1	"Nucleic acid-binding, OB-fold-like protein "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44134.3.S1_at	E	E	CV243788	CV243788	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44134.4.S1_at	E	E	CV228495	CV228495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44191.2.A1_at	E	E	CV241745	CV241745	scaffold_9:9171694-9172095(+) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G49650.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	NA	NA	NA
PtpAffx.44207.1.A1_at	E	E	CV241224	CV241224	NA	NA	Q4GXU6	40S ribosomal protein S4	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os01g25610.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	NA	NA
PtpAffx.44217.1.A1_at	E	E	CV240801	CV240801	scaffold_10:19046086-19046273(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44238.1.A1_at	E	E	CV239917	CV239917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44246.1.A1_at	E	E	CV239703	CV239703	NA	NA	Q7KN62	Transitional endoplasmic reticulum ATPase TER94	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	Medtr7g123900.1	"AAA ATPase, central region "	NA	NA	NA
PtpAffx.44381.1.A1_at	E	E	CV234182	CV234182	scaffold_1:19548675-19549134(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.444.1.A1_at	E	E	CV272950	CV272950	scaffold_13:15642637-15644336(-) (9)	NA	Q9ZNU6	Light-mediated development protein DET1	AT4G10180.1	light-mediated development protein 1 / deetiolated1 (DET1) 	LOC_Os01g01484.4	"light-mediated development protein DET1, putative, expressed"	Medtr5g008780.2	"Light-mediated development protein DET1, putative "	NA	NA	NA
PtpAffx.44415.1.A1_at	E	E	CV232931	CV232931	NA	NA	Q6K6K7	Ubiquitin-like modifier-activating enzyme 5	AT1G05350.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g30310.1	"ThiF family domain containing protein, putative, expressed"	Medtr3g150540.1	UBA/THIF-type NAD/FAD binding fold 	NA	NA	NA
PtpAffx.44418.1.A1_at	E	E	CV232741	CV232741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4447.1.S1_at	E	E	CX175257	CX175257	scaffold_9:2021661-2022191(+) (11)	NA	NA	NA	AT5G60710.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g56280.1	"zinc finger family protein, putative, expressed"	AC233683_9.1	"Zinc finger, RING-type; von Willebrand factor, type A AC233683.2 60779-55373 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.44493.1.A1_at	E	E	CV230442	CV230442	scaffold_5:15361571-15361930(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44495.1.A1_at	E	E	CV230381	CV230381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44495.1.A1_s_at	E	E	CV230381	CV230381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44537.1.A1_s_at	E	E	CV228543	CV228543	scaffold_10:17370194-17370420(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44571.1.A1_at	E	E	CV226736	CV226736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4473.3.S1_at	E	E	CF228205	CF228205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44863.1.S1_at	E	E	AJ773266	AJ773266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44933.1.A1_at	E	E	CV272713	CV272713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44935.3.A1_at	E	E	DN496114	DN496114	NA	NA	Q9FEW9	12-oxophytodienoate reductase 3	AT2G06050.3	oxophytodienoate-reductase 3 	LOC_Os08g35740.2	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006830.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	NA	NA
PtpAffx.4495.2.A1_at	E	E	CK087588	CK087588	NA	NA	Q41785	Tubulin beta-8 chain	AT5G23860.2	tubulin beta 8 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.44971.1.S1_at	E	E	AJ768196	AJ768196	NA	NA	Q7XPF7	Probable cation transporter HKT7	AT4G10310.1	high-affinity K+ transporter 1 	LOC_Os04g51830.1	"OsHKT1;4 - Na+ transporter, expressed"	Medtr6g092410.1	Cation transporter 	NA	NA	NA
PtpAffx.450.5.A1_at	E	E	CV278124	CV278124	NA	NA	P52904	"Pyruvate dehydrogenase E1 component subunit beta, mitochondrial"	AT5G50850.1	Transketolase family protein 	LOC_Os08g42410.2	"transketolase, putative, expressed"	Medtr7g005080.1	Bacterial transketolase 	NA	NA	NA
PtpAffx.454.16.S1_at	E	E	CV252124	CV252124	NA	NA	P52855	60S acidic ribosomal protein P1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.454.38.A1_at	E	E	CV250038	CV250038	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g162880.1	Dehydrin 	NA	NA	NA
PtpAffx.45426.1.S1_s_at	E	E	CK113405	CK113405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4568.5.S1_at	E	E	BP934332	BP934332	NA	NA	Q41951	Aquaporin TIP2-1	AT3G16240.1	delta tonoplast integral protein 	LOC_Os02g44080.1	"aquaporin protein, putative, expressed"	Medtr8g015170.1	Aquaporin 	NA	NA	NA
PtpAffx.45716.1.S1_at	E	E	CK106949	CK106949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45793.1.A1_at	E	E	CK094541	CK094541	NA	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G41040.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr3g150860.1	Transferase 	NA	NA	NA
PtpAffx.45828.1.A1_at	E	E	CK092569	CK092569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45834.1.A1_at	E	E	CK092331	CK092331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45846.1.S1_at	E	E	CK091695	CK091695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45848.1.S1_at	E	E	CK091670	CK091670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45894.1.A1_at	E	E	CK089853	CK089853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45919.1.A1_at	E	E	CK087354	CK087354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45922.1.A1_at	E	E	BU891817	BU891817	NA	NA	NA	NA	AT4G32480.1	Protein of unknown function (DUF506)  	LOC_Os01g54340.3	"plant-specific domain TIGR01615 family protein, expressed"	Medtr5g008790.1	"Protein of unknown function DUF506, plant "	NA	NA	NA
PtpAffx.45930.1.S1_at	E	E	CF237173	CF237173	NA	NA	Q9LUD4	60S ribosomal protein L18a-3	AT3G14600.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	NA	NA	NA
PtpAffx.46092.2.A1_at	E	E	CV237941	CV237941	NA	NA	NA	NA	AT2G14045.2	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g08820.1	"C-Myc-binding protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.46113.1.S1_at	E	E	CF936546	CF936546	scaffold_2:10148849-10150655(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4633.3.S1_at	E	E	CV225507	CV225507	NA	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	NA	NA
PtpAffx.4650.1.A1_at	E	E	CV250105	CV250105	scaffold_13:1626659-1632203(-) (9)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29150.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.4650.2.A1_s_at	E	E	CV282694	CV282694	NA	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G01150.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os02g49870.2	expressed protein	Medtr7g143530.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	NA	NA	NA
PtpAffx.46534.1.S1_at	E	E	DN493167	DN493167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.46535.1.A1_at	E	E	DN503183	DN503183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.46537.1.S1_at	E	E	DN493147	DN493147	NA	NA	P37545	Uncharacterized deoxyribonuclease yabD	AT5G17570.1	TatD related DNase 	LOC_Os04g48820.2	"deoxyribonuclease tatD, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.46566.1.S1_at	E	E	BU894966	BU894966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.46686.1.S1_at	E	E	CK318040	CK318040	NA	NA	P72190	Uncharacterized ATP-binding protein in capB 3'region	AT3G24430.1	ATP binding 	LOC_Os01g52170.1	expressed protein	Medtr6g102220.1	Mrp 	NA	NA	NA
PtpAffx.4669.4.S1_at	E	E	BU811735	BU811735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.46744.1.S1_at	E	E	BU868415	BU868415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4692.2.A1_at	E	E	CV280219	CV280219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4711.4.A1_at	E	E	CV231728	CV231728	scaffold_1:23658734-23658972(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4713.1.S1_at	E	E	CV264046	CV264046	NA	NA	P53393	Low affinity sulfate transporter 3	AT5G10180.1	slufate transporter 2;1 	LOC_Os03g09940.1	"sulfate transporter, putative, expressed"	Medtr3g101160.1	Sulphate transporter 	NA	NA	NA
PtpAffx.47214.1.S1_a_at	E	E	CK093895	CK093895	NA	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.6	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	NA	NA	NA
PtpAffx.475.2.A1_at	E	E	CK089406	CK089406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47670.1.S1_at	E	E	CK103965	CK103965	NA	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr3g109820.1	TIR; Disease resistance protein 	NA	NA	NA
PtpAffx.47709.1.A1_at	E	E	CV281009	CV281009	NA	NA	O00057	Protein NMT1 homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47734.1.S1_s_at	E	E	CF235487	CF235487	NA	NA	NA	NA	AT1G10410.1	Protein of unknown function (DUF1336) 	LOC_Os03g48660.1	"DUF1336 domain containing protein, expressed"	Medtr6g010060.1	Protein of unknown function DUF1336 	NA	NA	NA
PtpAffx.47734.2.S1_at	E	E	CK094059	CK094059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47738.1.S1_at	E	E	CK103983	CK103983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47743.1.S1_at	E	E	BI126271	BI126271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47876.3.S1_at	E	E	CV282077	CV282077	NA	NA	NA	NA	AT2G42310.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g31260.1	expressed protein	Medtr1g071470.1	hypothetical protein 	NA	NA	NA
PtpAffx.4795.1.A1_a_at	E	E	CV279995	CV279995	scaffold_8:13256545-13256584(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4795.1.A1_s_at	E	E	CV279995	CV279995	scaffold_8:13256172-13256321(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47971.1.S1_at	E	E	DN492834	DN492834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47981.1.A1_at	E	E	DN492319	DN492319	scaffold_3:15068041-15068568(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47995.1.S1_at	E	E	DN492119	DN492119	NA	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66940.3	protein kinase-related 	NA	NA	Medtr7g093700.1	"receptor serine/threonine kinase PR5K, putative "	NA	NA	NA
PtpAffx.48086.1.S1_at	E	E	DN497608	DN497608	scaffold_15:13705759-13706070(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48150.1.S1_at	E	E	DN494894	DN494894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48156.2.S1_a_at	E	E	DN494720	DN494720	scaffold_1:10758535-10758748(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48197.1.S1_at	E	E	BU895923	BU895923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48199.1.A1_at	E	E	DN492298	DN492298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4820.6.A1_at	E	E	CV251255	CV251255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48223.1.A1_at	E	E	DN491623	DN491623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48256.1.A1_at	E	E	DN490684	DN490684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48283.1.A1_at	E	E	DN489545	DN489545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48288.1.S1_at	E	E	DN499206	DN499206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48291.1.A1_at	E	E	DN489381	DN489381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48301.1.A1_at	E	E	DN488850	DN488850	NA	NA	NA	NA	NA	NA	LOC_Os05g49060.1	"uncharacterized protein ycf23, putative, expressed"	Medtr4g165580.1	Ribulose-phosphate binding barrel 	NA	NA	NA
PtpAffx.48307.1.S1_at	E	E	DN488503	DN488503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48320.1.A1_s_at	E	E	DN487837	DN487837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48329.4.A1_at	E	E	CF234664	CF234664	NA	NA	P83304	Mannose/glucose-specific lectin (Fragment)	AT1G19715.3	Mannose-binding lectin superfamily protein 	LOC_Os12g09700.1	"Jacalin-like lectin domain containing protein, putative, expressed"	Medtr5g079480.1	Jacalin-related lectin 	NA	NA	NA
PtpAffx.4851.1.S1_a_at	E	E	DN486481	DN486481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4851.1.S1_at	E	E	DN486481	DN486481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4884.2.S1_at	E	E	CV260797	CV260797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4938.2.S1_at	E	E	CF228786	CF228786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4943.1.A1_a_at	E	E	CV264273	CV264273	NA	NA	NA	NA	AT2G03420.1	unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g11230.1	expressed protein	Medtr5g046430.1	hypothetical protein 	NA	NA	NA
PtpAffx.49471.1.A1_at	E	E	CV257504	CV257504	scaffold_10:19302028-19302891(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	NA	NA	NA
PtpAffx.49518.1.A1_at	E	E	CV282316	CV282316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49597.1.A1_at	E	E	CV278547	CV278547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49720.1.S1_at	E	E	CV273509	CV273509	scaffold_2:14182265-14182327(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49720.1.S1_s_at	E	E	CV273509	CV273509	scaffold_2:14181743-14182048(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49989.1.A1_at	E	E	CV244566	CV244566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50031.2.A1_at	E	E	DN484504	DN484504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5015.1.A1_at	E	E	CF228047	CF228047	scaffold_1:47704777-47705428(-) (9)	NA	Q9FKT0	Actin-related protein 8	AT5G56180.1	actin-related protein 8 	LOC_Os04g57210.3	"actin-6, putative, expressed"	Medtr3g016840.1	Cyclin-like F-box; Actin/actin-like 	NA	NA	NA
PtpAffx.50178.1.A1_at	E	E	CV256145	CV256145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50248.2.A1_at	E	E	DN490685	DN490685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50277.1.A1_at	E	E	CV252198	CV252198	NA	NA	Q9AT35	60S ribosomal protein L23a	AT2G39460.2	ribosomal protein L23AA 	LOC_Os01g24690.3	"60S ribosomal protein L23A, putative, expressed"	Medtr4g079040.1	"Ribosomal protein L23, N-terminal; Ribosomal L23 and L15e, core "	NA	NA	NA
PtpAffx.50312.1.S1_a_at	E	E	BU871048	BU871048	scaffold_1:22900848-22901434(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50312.2.S1_at	E	E	CV250164	CV250164	scaffold_1:22901045-22901293(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50367.1.A1_at	E	E	CV247179	CV247179	scaffold_10:12175054-12175493(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50373.1.A1_at	E	E	CV246681	CV246681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50417.1.A1_at	E	E	CV245399	CV245399	scaffold_6:1953792-1954173(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50423.1.A1_at	E	E	CV245285	CV245285	scaffold_15:11034441-11034749(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50424.1.A1_at	E	E	CV245238	CV245238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50449.1.A1_at	E	E	CV244475	CV244475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50450.1.A1_at	E	E	CV244466	CV244466	scaffold_11:18420365-18420887(-) (10)//scaffold_1631:2945-3469(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50502.1.A1_at	E	E	CV242787	CV242787	NA	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT5G65780.2	branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) 	LOC_Os01g56140.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.50520.1.A1_at	E	E	CV242449	CV242449	scaffold_25:313894-314400(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50578.1.A1_at	E	E	CV240453	CV240453	scaffold_12:1006867-1007151(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50588.1.A1_at	E	E	CV240166	CV240166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50591.1.A1_at	E	E	CV240100	CV240100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50635.1.A1_at	E	E	CV238746	CV238746	NA	NA	P42036	40S ribosomal protein S14-3	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os04g33750.1	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	NA	NA	NA
PtpAffx.50640.1.A1_at	E	E	CV238485	CV238485	scaffold_1:4605327-4605447(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50667.1.A1_at	E	E	CV237201	CV237201	NA	NA	P76015	"PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.3	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	NA	NA	NA
PtpAffx.50726.1.A1_at	E	E	CV234837	CV234837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50744.1.A1_at	E	E	CV234036	CV234036	NA	NA	NA	NA	AT5G23680.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os03g63320.1	"SAM domain containing protein, putative, expressed"	Medtr4g152000.1	Sterile alpha motif homology 	NA	NA	NA
PtpAffx.5084.2.S1_at	E	E	CX654161	CX654161	NA	NA	Q680P8	40S ribosomal protein S29	AT4G33865.1	Ribosomal protein S14p/S29e family protein 	LOC_Os11g41610.1	"40S ribosomal protein S29, putative"	Medtr5g005230.1	Ribosomal protein S14 	NA	NA	NA
PtpAffx.50938.1.A1_at	E	E	CK317898	CK317898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.51025.1.A1_at	E	E	CV262772	CV262772	scaffold_13:4554558-4554665(-) (9)	NA	P55080	Microfibrillar-associated protein 1	AT5G17900.1	microfibrillar-associated protein-related 	LOC_Os02g17870.1	"microfibrillar-associated protein 1, putative, expressed"	Medtr4g132710.1	"Micro-fibrillar-associated 1, C-terminal "	NA	NA	NA
PtpAffx.51037.2.S1_at	E	E	CV245471	CV245471	NA	NA	Q68F45	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	NA	NA	NA
PtpAffx.51096.1.S1_s_at	E	E	CK111630	CK111630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.51103.1.S1_at	E	E	AJ778740	AJ778740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5122.6.A1_at	E	E	CV272959	CV272959	NA	NA	O23095	60S acidic ribosomal protein P1-2	AT5G24510.1	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	NA	NA	NA
PtpAffx.5125.1.S1_at	E	E	BU874512	BU874512	NA	NA	Q8GXR2	Probable polyol transporter 6	AT4G36670.1	Major facilitator superfamily protein 	LOC_Os10g21590.2	"transporter family protein, putative, expressed"	Medtr8g093570.1	General substrate transporter 	NA	NA	NA
PtpAffx.51321.1.A1_at	E	E	CV243117	CV243117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5179.4.S1_at	E	E	CK092165	CK092165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5195.1.S1_at	E	E	CV262828	CV262828	NA	NA	Q8L831	Nudix hydrolase 3	AT1G79690.1	nudix hydrolase homolog 3 	LOC_Os02g55030.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.5198.1.S1_s_at	E	E	CV241184	CV241184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52012.1.A1_at	E	E	CV276916	CV276916	scaffold_16:6200655-6200751(-) (9)	NA	NA	NA	AT1G07910.2	RNAligase 	LOC_Os07g09400.1	"RNA ligase isoform 1, putative, expressed"	Medtr4g080530.1	"ATRNL/RNL, putative "	NA	NA	NA
PtpAffx.52012.1.A1_s_at	E	E	CV276916	CV276916	scaffold_16:6200762-6201126(-) (11)	NA	NA	NA	AT1G07910.2	RNAligase 	LOC_Os07g09400.1	"RNA ligase isoform 1, putative, expressed"	Medtr4g080530.1	"ATRNL/RNL, putative "	NA	NA	NA
PtpAffx.52130.1.S1_at	E	E	CK096766	CK096766	NA	NA	Q9C8L4	"Hydroxyacylglutathione hydrolase 3, mitochondrial"	AT1G53580.1	glyoxalase II  3 	LOC_Os01g47690.1	"metallo-beta-lactamase family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.5282.2.S1_s_at	E	E	CX184225	CX184225	scaffold_7:1048390-1048571(+) (11)	NA	Q9SID1	Salt tolerance-like protein	AT2G31380.1	salt tolerance homologue 	LOC_Os02g39360.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g118390.2	"Zinc finger, B-box "	NA	NA	NA
PtpAffx.5304.1.A1_at	E	E	CV268322	CV268322	scaffold_17:1770195-1770683(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.53138.1.S1_at	E	E	DN488421	DN488421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.53238.1.S1_at	E	E	DN485358	DN485358	scaffold_17:7477755-7479024(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5329.1.A1_at	E	E	CA824777	CA824777	scaffold_2:20625781-20625908(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5329.1.A1_s_at	E	E	CA824777	CA824777	scaffold_2:20625679-20626209(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5329.2.A1_at	E	E	CV269342	CV269342	NA	NA	NA	NA	AT3G09860.1	unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5354.1.S1_at	E	E	DN492403	DN492403	NA	NA	NA	NA	AT5G27010.1	ARM repeat superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.53635.1.S1_at	E	E	CV226415	CV226415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5364.1.S1_at	E	E	CK105246	CK105246	NA	NA	Q94AU2	25.3 kDa vesicle transport protein	AT1G11890.1	Synaptobrevin family protein 	LOC_Os06g09850.2	"25.3 kDa vesicle transport protein, putative, expressed"	Medtr8g025760.1	Synaptobrevin 	NA	NA	NA
PtpAffx.5366.2.A1_at	E	E	CK090447	CK090447	NA	NA	Q9SAA2	"ATP-dependent Clp protease proteolytic subunit 6, chloroplastic"	AT1G11750.1	CLP protease proteolytic subunit 6 	LOC_Os03g29810.1	"OsClp6 - Putative Clp protease homologue, expressed"	Medtr4g095340.1	"Peptidase S14, ClpP "	NA	NA	NA
PtpAffx.53666.1.A1_at	E	E	DN490291	DN490291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.53702.1.S1_at	E	E	CK107259	CK107259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.53711.2.S1_at	E	E	DN490671	DN490671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5372.1.A1_at	E	E	CV251613	CV251613	NA	NA	Q9FF52	60S ribosomal protein L12-3	AT5G60670.1	Ribosomal protein L11 family protein 	LOC_Os02g47140.2	"L11 domain containing ribosomal protein, putative, expressed"	Medtr2g110350.1	Ribosomal protein L11 	NA	NA	NA
PtpAffx.54148.1.A1_at	E	E	BI124202	BI124202	NA	NA	NA	NA	AT4G30900.2	DNAse I-like superfamily protein 	LOC_Os05g19974.2	"endonuclease/exonuclease/phosphatase family protein, putative, expressed"	Medtr8g145310.1	hypothetical protein 	NA	NA	NA
PtpAffx.5419.2.S1_a_at	E	E	BU827376	BU827376	scaffold_2:4923089-4923516(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54313.2.S1_a_at	E	E	BU895504	BU895504	NA	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30760.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.54433.1.S1_at	E	E	BU896161	BU896161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54463.1.S1_a_at	E	E	DN491693	DN491693	scaffold_1:23969496-23969530(-) (11)//scaffold_1:23969532-23969566(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54463.1.S1_at	E	E	DN491693	DN491693	scaffold_1:23969079-23969500(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5448.2.S1_at	E	E	CK107729	CK107729	NA	NA	Q9LJ98	Probable prefoldin subunit 2	AT3G22480.1	prefoldin 2 	LOC_Os12g30060.2	"prefoldin subunit, putative, expressed"	Medtr3g008490.1	Prefoldin beta-like 	NA	NA	NA
PtpAffx.54487.1.S1_at	E	E	DN500860	DN500860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54540.1.S1_at	E	E	DN488317	DN488317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5465.4.A1_at	E	E	CV231550	CV231550	NA	NA	Q9ATM4	Aquaporin PIP2-7	AT4G23400.1	plasma membrane intrinsic protein 1;5 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr2g110380.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.54678.1.S1_at	E	E	DN492898	DN492898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54686.1.A1_at	E	E	DN492095	DN492095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54690.1.A1_at	E	E	DN491928	DN491928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54697.1.A1_at	E	E	DN491771	DN491771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5472.1.S1_a_at	E	E	CA824099	CA824099	scaffold_1:10831661-10831854(+) (11)	NA	NA	NA	AT1G27330.1	Ribosome associated membrane protein RAMP4 	LOC_Os11g41875.2	"membrane protein, putative, expressed"	Medtr2g030550.1	Ribosome associated membrane RAMP4 	NA	NA	NA
PtpAffx.54740.1.A1_at	E	E	DN490399	DN490399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54755.1.S1_at	E	E	DN498989	DN498989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54783.1.A1_at	E	E	DN488000	DN488000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54850.1.A1_at	E	E	DN486077	DN486077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54856.1.S1_at	E	E	DN485617	DN485617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54861.1.S1_at	E	E	DN485321	DN485321	NA	NA	NA	NA	AT1G58170.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	AC234702_13.1	Plant disease resistance response protein AC234702.1 83360-84147 F EGN_Mt090430 200	NA	NA	NA
PtpAffx.54862.1.S1_at	E	E	DN494751	DN494751	scaffold_10:13784040-13784358(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5490.1.A1_at	E	E	CV245901	CV245901	NA	NA	O16264	Phosphatidylethanolamine-binding protein homolog F40A3.3	AT1G18100.1	PEBP (phosphatidylethanolamine-binding protein) family protein 	LOC_Os06g30370.1	"osMFT1  MFT-Like1 homologous to Mother of FT and TFL1  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	AC146807_6.1	Phosphatidylethanolamine-binding protein AC146807.56 102779-100897 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.5499.1.A1_at	E	E	CV245700	CV245700	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g088580.1	Exostosin-like 	NA	NA	NA
PtpAffx.5503.1.A1_at	E	E	CV245629	CV245629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5504.1.A1_at	E	E	CV245621	CV245621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5513.1.A1_s_at	E	E	CV245369	CV245369	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g007830.1	"S1 ribosomal protein, putative "	NA	NA	NA
PtpAffx.5514.4.A1_at	E	E	CV228069	CV228069	scaffold_4:20688024-20688516(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5514.5.A1_at	E	E	CV245185	CV245185	scaffold_4:20687285-20687784(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.55272.1.S1_at	E	E	BP927962	BP927962	NA	NA	NA	NA	AT3G58050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41; Bacteria - 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses - 46; Other Eukaryotes - 4915 (source: NCBI BLink). 	LOC_Os10g01610.1	expressed protein	AC233571_15.1	"Zinc finger, C2H2-type AC233571.2 69860-68176 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.5528.1.A1_at	E	E	CV244792	CV244792	NA	NA	P41126	60S ribosomal protein L13	AT3G49010.3	breast basic conserved 1 	LOC_Os03g37970.1	"ribosomal protein L13, putative, expressed"	AC235094_22.2	Ribosomal protein L13e AC235094.1 123915-120635 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.5531.1.A1_at	E	E	CV244758	CV244758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5541.1.A1_at	E	E	CV244416	CV244416	NA	NA	Q61151	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g62730.3	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	NA	NA	NA
PtpAffx.5551.1.A1_at	E	E	CV244054	CV244054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5559.1.A1_at	E	E	CV243909	CV243909	NA	NA	NA	NA	AT5G56190.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g38880.6	"WD-40 repeat family protein, putative, expressed"	Medtr2g033600.1	WD40-like 	NA	NA	NA
PtpAffx.5577.1.A1_at	E	E	CV243432	CV243432	NA	NA	Q9XZJ4	Proteasome subunit alpha type-6	AT5G35590.1	proteasome alpha subunit A1 	LOC_Os03g08280.2	"peptidase, T1 family, putative, expressed"	Medtr2g071490.1	Proteasome alpha-subunit 	NA	NA	NA
PtpAffx.5580.5.S1_at	E	E	CV240415	CV240415	scaffold_1:35556096-35556544(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5597.1.A1_at	E	E	CV242587	CV242587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56104.1.A1_at	E	E	CV278211	CV278211	NA	NA	Q67XJ2	Nuclear transcription factor Y subunit B-10	AT3G53340.1	"nuclear factor Y, subunit B10 "	LOC_Os05g38820.5	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr7g120830.1	Transcription factor CBF/NF-Y/archaeal histone 	NA	NA	NA
PtpAffx.56127.1.A1_a_at	E	E	CX179187	CX179187	NA	NA	NA	NA	AT1G14150.1	PsbQ-like 2 	LOC_Os02g36850.1	"oxygen evolving enhancer protein 3, identical, putative, expressed"	Medtr5g045040.1	Photosystem II oxygen evolving complex protein PsbQ 	NA	NA	NA
PtpAffx.56127.2.A1_a_at	E	E	CV262320	CV262320	NA	NA	NA	NA	AT1G14150.1	PsbQ-like 2 	LOC_Os02g36850.1	"oxygen evolving enhancer protein 3, identical, putative, expressed"	Medtr5g045040.1	Photosystem II oxygen evolving complex protein PsbQ 	NA	NA	NA
PtpAffx.5613.1.A1_at	E	E	CV241912	CV241912	NA	NA	P32100	60S ribosomal protein L7	AT2G44120.2	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	NA	NA	NA
PtpAffx.5631.1.A1_at	E	E	CV241367	CV241367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56362.1.A1_at	E	E	CV268209	CV268209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5642.1.A1_at	E	E	CV240885	CV240885	NA	NA	O18404	3-hydroxyacyl-CoA dehydrogenase type-2	AT2G29340.1	NAD-dependent epimerase/dehydratase family protein 	LOC_Os04g30760.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr7g096880.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.56479.1.A1_at	E	E	CV263471	CV263471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56509.1.A1_at	E	E	CV262468	CV262468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5672.1.A1_s_at	E	E	CV239438	CV239438	NA	NA	Q9QYI7	DnaJ homolog subfamily B member 8	AT1G56300.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g18870.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g138160.1	"Glycoside hydrolase, family 11; Heat shock protein DnaJ, N-terminal "	NA	NA	NA
PtpAffx.56798.1.A1_at	E	E	CV251916	CV251916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56880.1.A1_at	E	E	CV247961	CV247961	NA	NA	Q5J907	Translationally-controlled tumor protein homolog	AT3G05540.1	Methionine sulfoxide reductase (MSS4-like) family protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	NA
PtpAffx.56930.1.A1_at	E	E	CV262239	CV262239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56943.1.A1_at	E	E	CV244944	CV244944	scaffold_10:10953219-10953499(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56997.1.A1_at	E	E	CV242667	CV242667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.57032.1.A1_at	E	E	CV241773	CV241773	NA	NA	Q9V597	60S ribosomal protein L31	AT4G26230.1	Ribosomal protein L31e family protein 	LOC_Os06g21480.1	"60S ribosomal protein L31, putative, expressed"	Medtr4g160530.1	Ribosomal protein L31e 	NA	NA	NA
PtpAffx.57035.1.A1_at	E	E	CV241603	CV241603	scaffold_18:13930147-13930710(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.57092.1.A1_at	E	E	CV239044	CV239044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5718.1.A1_at	E	E	CV237477	CV237477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.57190.1.A1_at	E	E	CV235557	CV235557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.57252.1.A1_at	E	E	CV233267	CV233267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.57283.1.A1_at	E	E	CV232098	CV232098	scaffold_5:22560573-22560888(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.57310.1.A1_at	E	E	CV230814	CV230814	scaffold_1:11011389-11011652(+) (11)//scaffold_456:10968-11231(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5733.1.A1_at	E	E	CV236492	CV236492	NA	NA	P62315	Small nuclear ribonucleoprotein Sm D1	AT4G02840.1	Small nuclear ribonucleoprotein family protein 	LOC_Os04g39444.1	"LSM domain containing protein, expressed"	Medtr1g086500.1	"Like-Sm ribonucleoprotein-related, core "	NA	NA	NA
PtpAffx.57399.1.S1_at	E	E	CV227152	CV227152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.57427.1.A1_at	E	E	CV226016	CV226016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5755.1.S1_at	E	E	CV272636	CV272636	scaffold_16:13815215-13815554(+) (11)	NA	Q9XG77	Proteasome subunit alpha type-6	AT2G05840.1	20S proteasome subunit PAA2 	LOC_Os03g08280.2	"peptidase, T1 family, putative, expressed"	Medtr2g071490.1	Proteasome alpha-subunit 	NA	NA	NA
PtpAffx.5797.2.S1_at	E	E	AJ775625	AJ775625	NA	NA	Q9SJ22	Probable cellulose synthase A catalytic subunit 9 [UDP-forming]	AT2G21770.1	cellulose synthase A9 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr4g141680.1	"Zinc finger, RING-type; Cellulose synthase "	NA	NA	NA
PtpAffx.5810.1.A1_at	E	E	CV233798	CV233798	NA	NA	Q9XF89	"Chlorophyll a-b binding protein CP26, chloroplastic"	AT4G10340.1	light harvesting complex of photosystem II 5 	LOC_Os11g13890.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g070180.1	Chlorophyll A-B binding protein 	NA	NA	NA
PtpAffx.58121.2.S1_at	E	E	CN519227	CN519227	NA	NA	Q6P7R8	Estradiol 17-beta-dehydrogenase 12	AT1G67730.1	beta-ketoacyl reductase 1 	LOC_Os02g38440.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g102850.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.58160.2.S1_at	E	E	CN517462	CN517462	scaffold_6:2446255-2446550(+) (10)	NA	NA	NA	AT5G19400.2	Telomerase activating protein Est1 	LOC_Os08g21350.3	"cig3, putative, expressed"	Medtr5g096600.1	"cig3, related "	NA	NA	NA
PtpAffx.5833.2.A1_at	E	E	CK094577	CK094577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58436.1.S1_at	E	E	CK095548	CK095548	NA	NA	Q39008	Mitogen-activated protein kinase kinase kinase 1	AT4G08500.1	MAPK/ERK kinase kinase 1 	LOC_Os03g15570.1	"STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g098410.1	Protein kinase 	NA	NA	NA
PtpAffx.5847.1.A1_at	E	E	CV232305	CV232305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5850.1.A1_x_at	E	E	CV275476	CV275476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58503.1.S1_at	E	E	CK092902	CK092902	NA	NA	NA	NA	AT4G12760.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g34480.1	expressed protein	Medtr3g163630.1	hypothetical protein 	NA	NA	NA
PtpAffx.5851.1.A1_at	E	E	CV232202	CV232202	NA	NA	Q9STL8	Probable Ufm1-specific protease	AT3G48380.1	"Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 "	LOC_Os12g18760.2	"peptidase family C78 domain containing protein, expressed"	AC235753_17.1	Protein of unknown function DUF1671 AC235753.1 103660-96079 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.5859.1.S1_at	E	E	BU837715	BU837715	scaffold_5:15529812-15530026(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58633.1.A1_at	E	E	CK096787	CK096787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58727.2.S1_at	E	E	CK115295	CK115295	NA	NA	NA	NA	AT5G63860.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os02g34860.1	"Regulator of chromosome condensation domain containing protein, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.58736.1.A1_at	E	E	CK092807	CK092807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58754.1.A1_at	E	E	CK091646	CK091646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58764.1.S1_at	E	E	CK091482	CK091482	scaffold_9:5616071-5616216(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58790.1.A1_at	E	E	CK090733	CK090733	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g095910.1	Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.58816.1.S1_at	E	E	CK089875	CK089875	scaffold_19:10303050-10303450(+) (9)//scaffold_19:10355472-10355876(+) (9)//scaffold_19:10377905-10378309(+) (9)//scaffold_19:10462861-10463251(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58822.1.A1_at	E	E	CK089562	CK089562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5884.1.A1_at	E	E	CV230689	CV230689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58854.1.A1_at	E	E	CV243874	CV243874	NA	NA	NA	NA	AT1G80530.1	Major facilitator superfamily protein 	LOC_Os06g08110.1	"nodulin, putative, expressed"	Medtr8g122300.1	Nodulin-like 	NA	NA	NA
PtpAffx.5888.4.A1_at	E	E	CV247199	CV247199	NA	NA	Q9LZG0	Adenosine kinase 2	AT5G03300.1	adenosine kinase 2 	LOC_Os04g43750.2	"kinase, pfkB family, putative, expressed"	Medtr1g076700.1	"Carbohydrate kinase, PfkB "	NA	NA	NA
PtpAffx.5906.2.A1_at	E	E	CV226624	CV226624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5906.3.A1_a_at	E	E	CV232505	CV232505	scaffold_12:494461-494500(-) (11)//scaffold_1487:325-364(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5906.5.A1_at	E	E	CV243353	CV243353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5906.6.A1_at	E	E	CV243185	CV243185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.59173.1.S1_at	E	E	CV242894	CV242894	NA	NA	P31839	NADH-ubiquinone oxidoreductase chain 1	ATMG01275.1	NADH dehydrogenase 1A 	LOC_Os10g21396.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr7g021590.1	"Respiratory-chain NADH dehydrogenase, subunit 1 "	NA	NA	NA
PtpAffx.59240.2.A1_at	E	E	DN490904	DN490904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.59304.1.A1_at	E	E	AJ772233	AJ772233	NA	NA	P33560	Probable aquaporin TIP-type	AT4G01470.1	tonoplast intrinsic protein 1;3 	LOC_Os01g74450.1	"aquaporin protein, putative, expressed"	Medtr5g012870.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.5941.1.S1_at	E	E	CV228466	CV228466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5950.1.S1_at	E	E	CV228082	CV228082	NA	NA	B9DHD7	Vesicle-associated protein 2-2	AT1G08820.2	vamp/synaptobrevin-associated protein 27-2 	LOC_Os01g71050.1	"MSP domain containing protein, putative, expressed"	Medtr8g139690.1	Major sperm protein 	NA	NA	NA
PtpAffx.5976.1.A1_at	E	E	CV227061	CV227061	NA	NA	Q01358	Protein bli-3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5977.1.A1_at	E	E	CV227007	CV227007	scaffold_1:704588-705123(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.59867.1.S1_at	E	E	CK096172	CK096172	NA	NA	O04395	Flavonol synthase/flavanone 3-hydroxylase (Fragment)	AT1G78550.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g55070.1	"gibberellin 20 oxidase 2, putative"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.60092.1.S1_at	E	E	DN499696	DN499696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60174.1.S1_at	E	E	AI166256	AI166256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6024.1.S1_at	E	E	DN489577	DN489577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60416.1.S1_at	E	E	CK097325	CK097325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60421.1.S1_at	E	E	CK087700	CK087700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.606.10.S1_at	E	E	BP934262	BP934262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.606.7.S1_at	E	E	BU830183	BU830183	NA	NA	NA	NA	AT3G26510.4	Octicosapeptide/Phox/Bem1p family protein 	NA	NA	Medtr5g034310.1	Octicosapeptide/Phox/Bem1p 	NA	NA	NA
PtpAffx.606.8.S1_at	E	E	DN500768	DN500768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6060.1.S1_at	E	E	DN500873	DN500873	NA	NA	NA	NA	AT1G51340.1	MATE efflux family protein 	NA	NA	Medtr2g117440.1	Ribosomal protein S2; Multi antimicrobial extrusion protein MatE 	NA	NA	NA
PtpAffx.60655.1.S1_at	E	E	AJ777482	AJ777482	NA	NA	NA	NA	AT3G07530.1	CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). 	NA	NA	Medtr3g020530.1	hypothetical protein 	NA	NA	NA
PtpAffx.608.5.A1_at	E	E	DN494492	DN494492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60853.1.S1_at	E	E	CK111233	CK111233	NA	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g51080.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	NA	NA	NA
PtpAffx.60868.1.S1_at	E	E	CV240300	CV240300	NA	NA	NA	NA	AT1G53400.1	Ubiquitin domain-containing protein 	LOC_Os01g53079.1	"ubiquitin domain-containing protein 1, putative, expressed"	Medtr2g091650.1	"Ubiquitin domain-containing protein 1, putative "	NA	NA	NA
PtpAffx.6090.1.S1_at	E	E	DN493908	DN493908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60954.1.S1_a_at	E	E	BU878620	BU878620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61034.1.S1_at	E	E	DN488385	DN488385	NA	NA	Q14FB0	"NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic"	ATCG01010.1	"NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein "	LOC_Os10g21418.1	"NADPH-dependent oxidoreductase, putative"	Medtr7g021700.1	"NADH dehydrogenase (ubiquinone), chloroplast chain 5, C-terminal "	NA	NA	NA
PtpAffx.61034.2.S1_at	E	E	CN521157	CN521157	NA	NA	A4GYX4	Putative membrane protein ycf1	AT3G13225.2	WW domain-containing protein 	LOC_Os06g19470.3	"WW domain containing protein, expressed"	Medtr3g079940.1	WW/Rsp5/WWP 	NA	NA	NA
PtpAffx.61164.1.A1_at	E	E	DN491784	DN491784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61199.1.A1_at	E	E	DN490734	DN490734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61213.2.A1_at	E	E	DN489584	DN489584	NA	NA	NA	NA	AT5G39380.1	Plant calmodulin-binding protein-related 	LOC_Os03g11290.1	expressed protein	Medtr6g013960.1	"Calmodulin-binding, plant "	NA	NA	NA
PtpAffx.61236.1.A1_at	E	E	DN487949	DN487949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61242.1.A1_at	E	E	DN487743	DN487743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61298.1.A1_at	E	E	DN486083	DN486083	NA	NA	O14370	"Branched-chain-amino-acid aminotransferase, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61317.1.A1_at	E	E	DN484965	DN484965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61321.1.S1_at	E	E	DN494155	DN494155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61341.1.S1_at	E	E	DN484078	DN484078	scaffold_12:846228-846414(-) (9)	NA	NA	NA	AT1G79740.1	hAT transposon superfamily 	LOC_Os01g12280.2	"hAT dimerisation domain-containing protein, putative, expressed"	Medtr3g124780.1	"Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 "	NA	NA	NA
PtpAffx.61353.1.A1_at	E	E	BP937050	BP937050	scaffold_11:18836705-18837157(-) (11)	NA	Q9ZWC8	Serine/threonine-protein kinase BRI1-like 1	AT1G55610.2	BRI1 like 	LOC_Os09g12240.1	"serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	NA	NA	NA
PtpAffx.61626.4.S1_at	E	E	BP934563	BP934563	NA	NA	NA	NA	AT4G12110.1	sterol-4alpha-methyl oxidase 1-1 	LOC_Os10g39810.1	"fatty acid hydroxylase, putative, expressed"	Medtr8g106630.1	Sterol desaturase 	NA	NA	NA
PtpAffx.618.12.A1_at	E	E	CV252795	CV252795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61838.1.S1_at	E	E	CV272974	CV272974	scaffold_9:10191175-10192081(-) (11)	NA	NA	NA	AT4G39050.1	Kinesin motor family protein 	LOC_Os10g36880.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g162930.2	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.61991.2.S1_at	E	E	CX173837	CX173837	NA	NA	NA	NA	AT4G19100.1	Protein of unknown function (DUF3464) 	LOC_Os06g21530.1	expressed protein	Medtr5g027230.1	"predicted membrane protein, related "	NA	NA	NA
PtpAffx.62432.1.S1_at	E	E	CV266495	CV266495	scaffold_6:1429771-1430236(-) (11)	NA	NA	NA	AT1G09890.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127440.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	NA	NA	NA
PtpAffx.62539.1.A1_at	E	E	CV275545	CV275545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62649.1.A1_at	E	E	CV271319	CV271319	NA	NA	Q06396	ADP-ribosylation factor 1	AT5G14670.1	ADP-ribosylation factor A1B 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	NA	NA	NA
PtpAffx.6298.3.S1_at	E	E	CF936930	CF936930	NA	NA	NA	NA	AT1G19530.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g61150.2	expressed protein	NA	NA	NA	NA	NA
PtpAffx.63004.1.A1_at	E	E	CV258063	CV258063	scaffold_2:5742574-5742748(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63042.1.A1_at	E	E	CV256433	CV256433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63122.3.A1_at	E	E	DN484985	DN484985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63137.1.A1_at	E	E	CV252866	CV252866	NA	NA	Q9SHE7	Ubiquitin-NEDD8-like protein RUB1	AT1G31340.1	related to ubiquitin 1 	LOC_Os09g25320.1	"ubiquitin family protein, putative, expressed"	Medtr5g100010.1	Ubiquitin 	NA	NA	NA
PtpAffx.6315.3.S1_at	E	E	CF231053	CF231053	NA	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	NA	NA
PtpAffx.63164.1.A1_at	E	E	CV251760	CV251760	scaffold_1:30994343-30994873(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63168.1.A1_at	E	E	CV251701	CV251701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6323.1.S1_at	E	E	BU834134	BU834134	NA	NA	O81223	Calcineurin B-like protein 4	AT5G24270.2	Calcium-binding EF-hand family protein 	LOC_Os02g18880.1	"calcineurin B, putative, expressed"	Medtr3g124000.1	EF-Hand type 	NA	NA	NA
PtpAffx.63248.1.A1_at	E	E	CV248315	CV248315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63251.1.A1_at	E	E	CV266520	CV266520	scaffold_1:4777170-4777696(-) (11)	NA	Q9C826	Xanthoxin dehydrogenase	AT1G52340.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g59610.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr3g021580.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.63270.1.A1_s_at	E	E	CV247166	CV247166	NA	NA	P49690	60S ribosomal protein L23	AT3G04400.1	Ribosomal protein L14p/L23e family protein 	LOC_Os10g32920.1	"ribosomal protein, putative, expressed"	Medtr7g116740.1	Ribosomal protein L14b/L23e 	NA	NA	NA
PtpAffx.63291.1.A1_at	E	E	CV245732	CV245732	NA	NA	P46437	Glutathione S-transferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63294.1.A1_at	E	E	CV245600	CV245600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63309.1.A1_at	E	E	CV245184	CV245184	NA	NA	Q24756	Myosin light chain alkali	AT5G37780.1	calmodulin 1 	LOC_Os01g17190.1	"OsCam3 - Calmodulin, expressed"	Medtr7g034910.1	Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.63329.1.A1_at	E	E	CV244494	CV244494	scaffold_7:3288674-3289152(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63330.1.A1_at	E	E	CV244464	CV244464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63336.1.A1_at	E	E	CV244238	CV244238	scaffold_7:12438030-12438635(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63343.1.A1_at	E	E	CV244077	CV244077	NA	NA	P50693	Cytochrome c oxidase subunit 2	ATMG00160.1	cytochrome oxidase 2 	NA	NA	Medtr1g006010.1	Copper center Cu(A); 	NA	NA	NA
PtpAffx.63348.1.A1_at	E	E	CV243885	CV243885	NA	NA	P15007	Enolase	AT1G74030.1	enolase 1 	LOC_Os09g20820.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	NA	NA	NA
PtpAffx.63377.1.A1_at	E	E	CV243021	CV243021	NA	NA	Q292D0	40S ribosomal protein S11	AT4G30800.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g42380.1	"ribosomal protein S17, putative, expressed"	Medtr8g122510.1	Ribosomal protein S17 	NA	NA	NA
PtpAffx.63418.1.A1_at	E	E	CV241714	CV241714	NA	NA	P61082	NEDD8-conjugating enzyme Ubc12	AT4G36800.2	RUB1 conjugating enzyme 1 	LOC_Os10g11260.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.63423.1.A1_at	E	E	CV241585	CV241585	NA	NA	Q9NK57	NIF3-like protein 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63433.1.A1_at	E	E	CV241080	CV241080	NA	NA	Q2NL13	Trafficking protein particle complex subunit 5	AT5G58030.1	Transport protein particle (TRAPP) component 	LOC_Os01g51220.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr3g093070.1	"Transport protein particle (TRAPP) component, Bet3 "	NA	NA	NA
PtpAffx.63436.1.A1_at	E	E	CV239560	CV239560	NA	NA	P47949	"Troponin C, isoform 3"	AT2G27030.3	calmodulin 5 	LOC_Os05g41210.1	"OsCam2 - Calmodulin, expressed"	Medtr7g104480.1	Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.63438.1.A1_at	E	E	CV240859	CV240859	NA	NA	Q9V496	Apolipophorins	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63455.1.A1_at	E	E	CV240348	CV240348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63460.1.A1_at	E	E	CV240054	CV240054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63465.1.A1_at	E	E	CV239864	CV239864	NA	NA	P27061	Acid phosphatase 1	AT5G51260.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr8g050090.1	Plant acid phosphatase 	NA	NA	NA
PtpAffx.63503.1.A1_at	E	E	CV238586	CV238586	NA	NA	NA	NA	AT3G61460.1	brassinosteroid-responsive RING-H2 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63507.1.A1_at	E	E	CV238374	CV238374	scaffold_1:7062471-7062887(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63581.1.A1_at	E	E	CV234766	CV234766	NA	NA	P49107	"Photosystem I reaction center subunit N, chloroplastic"	AT5G64040.1	"photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) "	LOC_Os12g08770.1	"photosystem I reaction center subunit N, chloroplast precursor, putative, expressed"	Medtr3g144130.1	Photosystem I reaction centre subunit N 	NA	NA	NA
PtpAffx.63663.1.A1_at	E	E	CV231716	CV231716	scaffold_1:11288928-11289294(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63788.2.A1_at	E	E	CV245841	CV245841	NA	NA	NA	NA	AT1G20080.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g25060.1	"NTMC2Type1.2 protein, putative, expressed"	Medtr1g031480.1	C2 	NA	NA	NA
PtpAffx.63820.1.A1_at	E	E	CV226447	CV226447	NA	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr8g081920.1	Ribosomal protein L15 	NA	NA	NA
PtpAffx.64238.1.S1_at	E	E	BU791215	BU791215	NA	NA	NA	NA	AT5G21430.2	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g31460.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.64618.1.S1_at	E	E	CV271300	CV271300	NA	NA	P43296	Cysteine proteinase RD19a	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	NA	NA	NA
PtpAffx.64865.1.S1_at	E	E	CK104995	CK104995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65112.2.S1_at	E	E	CK094628	CK094628	NA	NA	Q3E9B5	Putative peptide/nitrate transporter At5g19640	AT5G19640.1	Major facilitator superfamily protein 	LOC_Os02g48570.2	"peptide transporter PTR2, putative, expressed"	Medtr1g147290.1	"TGF-beta receptor, type I/II extracellular region "	NA	NA	NA
PtpAffx.65173.1.A1_at	E	E	CK091691	CK091691	NA	NA	Q0DWF2	Auxin-responsive protein IAA10	AT4G28640.3	indole-3-acetic acid inducible 11 	LOC_Os02g57250.2	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	NA	NA	NA	NA	NA
PtpAffx.653.1.S1_a_at	E	E	CV227680	CV227680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.653.14.A1_s_at	E	E	CX173034	CX173034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.653.4.S1_a_at	E	E	CV244767	CV244767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65397.1.A1_at	E	E	CF229426	CF229426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65495.1.S1_at	E	E	DN488666	DN488666	scaffold_17:13721435-13721789(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.658.2.S1_x_at	E	E	CV247289	CV247289	scaffold_18:12548856-12549256(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.658.4.S1_at	E	E	BU814411	BU814411	scaffold_18:12549341-12549433(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6581.13.S1_at	E	E	CV245744	CV245744	NA	NA	NA	NA	AT1G29980.1	"Protein of unknown function, DUF642 "	LOC_Os01g55190.1	expressed protein	Medtr2g024780.1	Galactose-binding like 	NA	NA	NA
PtpAffx.66150.1.S1_at	E	E	DN491025	DN491025	NA	NA	NA	NA	AT4G10620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	NA	NA	Medtr4g101260.1	"GTP binding, related "	NA	NA	NA
PtpAffx.66270.1.S1_at	E	E	DN501763	DN501763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.66460.1.S1_at	E	E	DN489039	DN489039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.66546.1.S1_at	E	E	BU833357	BU833357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.66613.1.S1_a_at	E	E	CK116932	CK116932	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g085240.1	Protein of unknown function DUF674 	NA	NA	NA
PtpAffx.66799.1.S1_at	E	E	DN495381	DN495381	NA	NA	Q9P6I2	Cys-Gly metallodipeptidase dug1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6696.3.S1_at	E	E	CV281650	CV281650	NA	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140360.1	Transferase 	NA	NA	NA
PtpAffx.67336.1.S1_at	E	E	BU897301	BU897301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67337.1.S1_at	E	E	DN493049	DN493049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67340.1.S1_at	E	E	DN492890	DN492890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67345.1.S1_at	E	E	DN502700	DN502700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67361.1.A1_at	E	E	DN492087	DN492087	scaffold_1:40664634-40664932(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67377.1.S1_at	E	E	CK113535	CK113535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67448.1.S1_at	E	E	CK112382	CK112382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67453.1.A1_at	E	E	DN487943	DN487943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.675.7.S1_at	E	E	BU869923	BU869923	NA	NA	Q05349	Auxin-repressed 12.5 kDa protein	AT1G28330.1	dormancy-associated protein-like 1 	LOC_Os11g44810.1	"auxin-repressed protein, putative, expressed"	Medtr2g017720.2	Dormancyauxin associated 	NA	NA	NA
PtpAffx.67519.1.S1_at	E	E	DN485767	DN485767	NA	NA	Q4PEF8	Histone H2B	AT5G59910.1	Histone superfamily protein 	LOC_Os01g05970.1	"OsFBO1 - F-box and other domain containing protein, expressed"	AC233662_2.1	Histone core; Histone-fold AC233662.1 5538-3743 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.67542.1.S1_at	E	E	BU829621	BU829621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67580.1.S1_s_at	E	E	CK114914	CK114914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67586.1.A1_at	E	E	DN493114	DN493114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67605.1.A1_at	E	E	DN491996	DN491996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67643.1.S1_at	E	E	DN490740	DN490740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67683.1.S1_at	E	E	DN487899	DN487899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67687.1.S1_at	E	E	DN497463	DN497463	scaffold_4:15874866-15875042(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6774.1.S1_s_at	E	E	CV239196	CV239196	NA	NA	A4GYX4	Putative membrane protein ycf1	ATCG01130.1	Ycf1 protein 	NA	NA	Medtr7g021570.1	"Putative membrane protein ycf1, "	NA	NA	NA
PtpAffx.67742.1.A1_at	E	E	DN485638	DN485638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67744.1.S1_at	E	E	BU814764	BU814764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67756.1.A1_at	E	E	DN484987	DN484987	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6778.2.S1_a_at	E	E	CV276301	CV276301	scaffold_8:2504442-2504592(-) (11)	NA	Q9SLG0	Nuclear transcription factor Y subunit B-1	AT2G38880.8	"nuclear factor Y, subunit B1 "	LOC_Os05g38820.5	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr7g120830.1	Transcription factor CBF/NF-Y/archaeal histone 	NA	NA	NA
PtpAffx.679.3.S1_at	E	E	CV244474	CV244474	NA	NA	Q6QPJ6	"Peroxiredoxin Q, chloroplastic"	AT3G26060.1	Thioredoxin superfamily protein 	LOC_Os06g09610.2	"peroxiredoxin, putative, expressed"	Medtr8g133010.1	Thioredoxin fold 	NA	NA	NA
PtpAffx.68127.1.S1_at	E	E	AJ770810	AJ770810	NA	NA	NA	NA	AT3G19490.1	sodium:hydrogen antiporter 1 	LOC_Os09g02214.1	"Citrate transporter protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.6822.1.S1_at	E	E	DN489704	DN489704	NA	NA	O04867	Glutamine synthetase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.68405.2.A1_at	E	E	CV244275	CV244275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.68502.1.S1_at	E	E	BU820316	BU820316	NA	NA	O65583	Uridine kinase-like protein 4	AT4G26510.2	uridine kinase-like 4 	LOC_Os11g16370.1	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr5g104300.1	Phosphoribulokinase/uridine kinase 	NA	NA	NA
PtpAffx.6880.1.S1_at	E	E	CK110324	CK110324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.68882.1.S1_at	E	E	CV280725	CV280725	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g149250.1	PWWP 	NA	NA	NA
PtpAffx.69005.1.A1_at	E	E	CV274431	CV274431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69014.1.A1_at	E	E	CV273971	CV273971	NA	NA	Q8H7Y8	Probable histone H2A variant 1	AT3G54560.1	histone H2A 11 	LOC_Os03g06670.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g013390.1	Histone H2A; Histone-fold 	NA	NA	NA
PtpAffx.69024.1.A1_at	E	E	CV273572	CV273572	NA	NA	O04287	Peptidyl-prolyl isomerase FKBP12	AT5G64350.1	FK506-binding protein 12 	LOC_Os02g52290.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr2g009460.1	"Peptidylprolyl isomerase, FKBP-type "	NA	NA	NA
PtpAffx.692.2.S2_at	E	E	CV274106	CV274106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.692.38.S1_at	E	E	AJ767863	AJ767863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69240.1.A1_at	E	E	CV264990	CV264990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69323.1.A1_at	E	E	CV261709	CV261709	scaffold_19:5399753-5400008(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69635.1.A1_at	E	E	CV249250	CV249250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69677.1.A1_at	E	E	CV247090	CV247090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69716.1.A1_at	E	E	CV245724	CV245724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69745.1.A1_at	E	E	CV244747	CV244747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69750.1.A1_at	E	E	CV244606	CV244606	NA	NA	NA	NA	AT2G37110.1	PLAC8 family protein 	LOC_Os01g06460.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr7g121070.1	Uncharacterized Cys-rich domain 	NA	NA	NA
PtpAffx.69778.1.A1_at	E	E	CV243774	CV243774	NA	NA	P34714	SPARC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69833.1.A1_at	E	E	CV241700	CV241700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69838.1.A1_at	E	E	CV241504	CV241504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69863.1.A1_at	E	E	CV240684	CV240684	NA	NA	P09180	60S ribosomal protein L4	AT3G09630.2	Ribosomal protein L4/L1 family 	LOC_Os07g08330.1	"ribosomal protein L4, putative, expressed"	Medtr1g065440.1	"Ribosomal protein L4/L1e, archeabacterial like "	NA	NA	NA
PtpAffx.69922.1.A1_at	E	E	CV238499	CV238499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69968.1.A1_at	E	E	CV237072	CV237072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69978.1.A1_at	E	E	CV236617	CV236617	NA	NA	P42744	NEDD8-activating enzyme E1 regulatory subunit	AT1G05180.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g60550.1	"ThiF family domain containing protein, putative, expressed"	Medtr4g062400.1	UBA/THIF-type NAD/FAD binding fold 	NA	NA	NA
PtpAffx.70021.1.A1_at	E	E	CV234850	CV234850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.70023.1.A1_at	E	E	CV234804	CV234804	NA	NA	Q9CE63	Galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.70067.1.A1_at	E	E	CV233048	CV233048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.70137.1.A1_at	E	E	CV230730	CV230730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.70186.1.A1_at	E	E	CV228544	CV228544	scaffold_7:12412978-12413315(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7035.1.S1_at	E	E	CK094601	CK094601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.70645.1.S1_at	E	E	CV280156	CV280156	scaffold_16:4389461-4389962(+) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37980.1	elicitor-activated gene 3-1 	LOC_Os09g23540.1	"dehydrogenase, putative, expressed"	Medtr5g032690.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	NA	NA	NA
PtpAffx.7093.1.A1_at	E	E	CK091450	CK091450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71047.2.S1_at	E	E	CV261930	CV261930	NA	NA	P29136	Metalloendoproteinase 1	AT1G70170.1	matrix metalloproteinase 	LOC_Os06g13180.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr6g009200.1	Peptidoglycan binding-like 	NA	NA	NA
PtpAffx.71066.9.S1_at	E	E	CV277651	CV277651	NA	NA	P32869	"Photosystem I reaction center subunit II, chloroplastic"	AT4G02770.1	photosystem I subunit D-1 	LOC_Os08g44680.1	"photosystem I reaction center subunit II, chloroplast precursor, putative, expressed"	Medtr5g006220.1	Photosystem I protein PsaD 	NA	NA	NA
PtpAffx.71484.1.A1_at	E	E	CK093393	CK093393	scaffold_30:213457-213602(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7153.1.A1_at	E	E	CK097814	CK097814	NA	NA	Q54QK7	Probable dimethyladenosine transferase	AT5G66360.2	Ribosomal RNA adenine dimethylase family protein 	LOC_Os07g32550.1	"dimethyladenosine transferase, putative, expressed"	Medtr5g021120.1	Ribosomal RNA adenine methylase transferase 	NA	NA	NA
PtpAffx.71541.1.A1_at	E	E	CK090768	CK090768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71561.1.A1_at	E	E	CK089548	CK089548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7177.1.S1_at	E	E	CV234119	CV234119	NA	NA	NA	NA	AT3G17430.1	Nucleotide-sugar transporter family protein 	LOC_Os03g49570.1	"domain of unknown function, DUF250 domain containing protein, expressed"	Medtr8g134090.1	Protein of unknown function DUF250 	NA	NA	NA
PtpAffx.72230.1.S1_at	E	E	DN502810	DN502810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7240.2.A1_at	E	E	CK096774	CK096774	NA	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G59750.1	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II 	LOC_Os05g38570.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr2g114380.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	NA	NA	NA
PtpAffx.7243.1.A1_a_at	E	E	CV267385	CV267385	scaffold_14:14877352-14877439(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7243.1.A1_at	E	E	CV267385	CV267385	scaffold_11:6429183-6432695(+) (9)//scaffold_11:9905284-9908640(+) (11)//scaffold_11:10038500-10041902(+) (10)//scaffold_13:9668565-9671910(-) (10)//scaffold_16:9674737-9678273(+) (11)//scaffold_19:7206979-7210338(+) (10)//scaffold_2:14028569-14031924(+) (11)//scaffold_2:20092363-20095871(-) (10)//scaffold_2:23504477-23507864(+) (10)//scaffold_3:2440836-2444030(-) (11)//scaffold_4:11977990-11981394(-) (9)//scaffold_5:25727027-25730233(-) (9)//scaffold_694:4674-8198(+) (11)//scaffold_8:18371208-18374386(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72549.1.S1_at	E	E	DN492219	DN492219	scaffold_11:3310546-3311057(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72604.1.S1_at	E	E	DN491745	DN491745	scaffold_2:6238445-6238954(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72749.1.S1_at	E	E	DN485384	DN485384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72898.1.S1_at	E	E	BU832115	BU832115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72951.1.S1_at	E	E	BU825573	BU825573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72976.1.S1_at	E	E	CK107591	CK107591	NA	NA	P49293	"Phytoene synthase, chloroplastic"	AT5G17230.2	PHYTOENE SYNTHASE 	LOC_Os12g43130.1	"phytoene synthase, chloroplast precursor, putative, expressed"	Medtr3g105590.1	Ribosomal protein S2; Squalene/phytoene synthase 	NA	NA	NA
PtpAffx.7303.1.A1_at	E	E	CV264426	CV264426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73140.1.S1_at	E	E	DN485784	DN485784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73160.1.S1_at	E	E	BU812883	BU812883	NA	NA	P26782	40S ribosomal protein S24	AT3G04920.1	Ribosomal protein S24e family protein 	LOC_Os01g52490.1	"40S ribosomal protein S24, putative, expressed"	Medtr7g140510.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.73185.1.A1_at	E	E	DN500796	DN500796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7321.1.S1_at	E	E	CV275702	CV275702	NA	NA	B6IRP3	50S ribosomal protein L1	AT2G42710.1	Ribosomal protein L1p/L10e family 	LOC_Os06g35470.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr4g110000.1	Ribosomal protein L1 	NA	NA	NA
PtpAffx.73763.1.S1_at	E	E	DN497138	DN497138	NA	NA	NA	NA	AT5G41960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g49610.2	expressed protein	Medtr5g008290.1	hypothetical protein 	NA	NA	NA
PtpAffx.73801.1.S1_at	E	E	DN486215	DN486215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73873.1.S1_at	E	E	DN503258	DN503258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7389.1.A1_at	E	E	CV270969	CV270969	NA	NA	Q99PV0	Pre-mRNA-processing-splicing factor 8	AT1G80070.1	Pre-mRNA-processing-splicing factor 	LOC_Os06g07080.1	"pre-mRNA-processing-splicing factor 8, putative, expressed"	Medtr2g126650.1	"Mov34/MPN/PAD-1; PRO8NT; PROCN; PRO, C-terminal "	NA	NA	NA
PtpAffx.73893.1.A1_at	E	E	DN491922	DN491922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73906.1.S1_at	E	E	BU876799	BU876799	scaffold_13:10086969-10087437(-) (11)	NA	O80592	Amino acid permease 8	AT1G10010.1	amino acid permease 8 	LOC_Os01g65660.2	"amino acid transporter, putative, expressed"	AC235665_45.1	"Amino acid transporter, transmembrane AC235665.2 256495-252290 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.73944.1.S1_at	E	E	DN490198	DN490198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73957.1.S1_at	E	E	DN499410	DN499410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73962.1.A1_at	E	E	DN489088	DN489088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73978.1.S1_at	E	E	DN488086	DN488086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.740.1.S1_at	E	E	CV274123	CV274123	scaffold_5:19232637-19233122(-) (11)	NA	Q9SHE8	"Photosystem I reaction center subunit III, chloroplastic"	AT1G31330.1	photosystem I subunit F 	LOC_Os03g56670.2	"photosystem I reaction center subunit III, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.74051.1.A1_at	E	E	DN485919	DN485919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74088.1.A1_at	E	E	DN484301	DN484301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7414.1.S1_at	E	E	CF234938	CF234938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74457.1.S1_at	E	E	CB239510	CB239510	NA	NA	P25858	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT3G04120.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1 	LOC_Os02g38920.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	NA	NA	NA
PtpAffx.746.1.A1_at	E	E	CV278659	CV278659	scaffold_8:6247778-6248313(+) (11)	NA	Q9M5K2	"Dihydrolipoyl dehydrogenase 2, mitochondrial"	AT3G17240.3	lipoamide dehydrogenase 2 	LOC_Os01g22520.1	"dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	NA	NA	NA
PtpAffx.7514.1.S1_at	E	E	CF229798	CF229798	NA	NA	Q2R352	Germin-like protein 11-1	AT5G61750.1	RmlC-like cupins superfamily protein 	LOC_Os11g33110.1	"Cupin domain containing protein, expressed"	Medtr3g143310.1	Cupin region 	NA	NA	NA
PtpAffx.7528.2.S1_at	E	E	CV244163	CV244163	NA	NA	P81393	Myb-related protein 308	AT4G38620.1	myb domain protein 4 	LOC_Os09g36730.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	NA	NA	NA
PtpAffx.75408.2.A1_at	E	E	CV278926	CV278926	NA	NA	NA	NA	AT3G01130.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr4g097560.1	hypothetical protein 	NA	NA	NA
PtpAffx.75589.1.A1_at	E	E	CV264157	CV264157	NA	NA	NA	NA	AT5G02130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g38330.1	"NDP1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.75825.3.A1_at	E	E	CV261796	CV261796	NA	NA	Q10D38	Magnesium transporter MRS2-I	AT5G64560.1	magnesium transporter 9 	LOC_Os03g53110.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr1g117730.1	"Mg2+ transporter protein, CorA-like "	NA	NA	NA
PtpAffx.75972.1.A1_at	E	E	CV249501	CV249501	NA	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	NA	NA	NA
PtpAffx.76058.1.A1_at	E	E	CV245616	CV245616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76066.1.A1_at	E	E	CV245338	CV245338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76068.1.A1_at	E	E	CV245213	CV245213	scaffold_14:5974084-5975255(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7611.5.A1_at	E	E	CV245195	CV245195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76129.1.A1_at	E	E	CV243286	CV243286	scaffold_11:14240467-14240888(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76158.1.A1_at	E	E	CV276299	CV276299	scaffold_6:20488320-20488803(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76163.1.A1_at	E	E	CV242324	CV242324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76178.1.A1_at	E	E	CV241796	CV241796	NA	NA	Q07984	Translocon-associated protein subunit delta	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76188.1.A1_at	E	E	CV241516	CV241516	NA	NA	P61255	60S ribosomal protein L26	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os01g04730.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	NA	NA	NA
PtpAffx.76190.1.A1_at	E	E	CV241496	CV241496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76202.1.A1_at	E	E	CV240989	CV240989	NA	NA	Q7SE71	"ATP synthase subunit 4, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76211.1.A1_at	E	E	CV240680	CV240680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76231.1.A1_at	E	E	CV239704	CV239704	NA	NA	P35122	Ubiquitin carboxyl-terminal hydrolase	AT4G17510.1	ubiquitin C-terminal hydrolase 3 	LOC_Os04g46190.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr8g105130.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	NA	NA	NA
PtpAffx.76264.1.A1_at	E	E	CV238370	CV238370	scaffold_10:6246424-6246516(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76362.1.A1_at	E	E	CV233807	CV233807	NA	NA	Q8W463	"50S ribosomal protein L19-1, chloroplastic"	AT4G17560.1	Ribosomal protein L19 family protein 	NA	NA	Medtr5g013420.1	Ribosomal protein L19 	NA	NA	NA
PtpAffx.76401.1.A1_at	E	E	CV232177	CV232177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76412.1.A1_at	E	E	CV231708	CV231708	scaffold_19:3509012-3509203(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76416.1.A1_at	E	E	CV231555	CV231555	scaffold_10:2660627-2660976(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76479.1.A1_at	E	E	CV257825	CV257825	scaffold_1:32061239-32061758(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76480.1.A1_at	E	E	CV228523	CV228523	scaffold_8:9284737-9285066(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76493.1.A1_at	E	E	CV228081	CV228081	scaffold_10:20294455-20295327(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76531.1.S1_at	E	E	CF233789	CF233789	scaffold_2:7899229-7899847(-) (10)	NA	NA	NA	AT5G49665.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os04g01160.1	"zinc finger family protein, putative, expressed"	Medtr3g127640.1	"Zinc finger, RING-type; von Willebrand factor, type A; Immunoglobulin/major histocompatibility complex "	NA	NA	NA
PtpAffx.76562.1.A1_at	E	E	CV225402	CV225402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7681.4.S1_at	E	E	AJ770831	AJ770831	NA	NA	Q9ATM6	Aquaporin PIP2-4	AT2G37180.1	Aquaporin-like superfamily protein 	LOC_Os02g41860.3	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.7686.6.A1_a_at	E	E	CV283756	CV283756	scaffold_16:13755398-13756218(-) (11)	NA	P85801	Thioredoxin H-type	AT3G08710.2	thioredoxin H-type 9 	LOC_Os01g07376.1	"thioredoxin, putative, expressed"	Medtr8g116230.1	Thioredoxin domain 2; 	NA	NA	NA
PtpAffx.7694.1.A1_at	E	E	CV229257	CV229257	NA	NA	A3KPE8	Small RNA degrading nuclease 1	AT3G50100.1	small RNA degrading nuclease 1 	LOC_Os04g55700.1	"exonuclease, putative, expressed"	Medtr1g027960.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.7721.1.S1_s_at	E	E	CA822067	CA822067	NA	NA	NA	NA	AT5G37370.1	PRP38 family protein 	LOC_Os05g08600.2	"splicing factor, putative, expressed"	Medtr5g085030.1	PRP38 	NA	NA	NA
PtpAffx.77231.1.S1_a_at	E	E	DN490454	DN490454	scaffold_5:24753812-24753900(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77231.3.A1_a_at	E	E	CV253092	CV253092	scaffold_5:24754928-24755115(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77231.3.A1_at	E	E	CV253092	CV253092	scaffold_5:24751958-24755098(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77335.1.S1_at	E	E	DN493413	DN493413	NA	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os05g34150.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	NA	NA	NA
PtpAffx.77355.1.S1_at	E	E	CK114200	CK114200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77416.2.S1_at	E	E	CK110402	CK110402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77666.2.S1_at	E	E	CK087798	CK087798	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g138160.1	"Glycoside hydrolase, family 11; Heat shock protein DnaJ, N-terminal "	NA	NA	NA
PtpAffx.7770.1.A1_at	E	E	CA934754	CA934754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77722.1.A1_at	E	E	CV264685	CV264685	NA	NA	NA	NA	NA	NA	NA	NA	Medtr8g105940.1	Light chain 3 (LC3) 	NA	NA	NA
PtpAffx.77826.1.A1_at	E	E	CK092202	CK092202	NA	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os01g31760.1	"acyl-ACP thioesterase, putative"	Medtr8g118600.1	Acyl-ACP thioesterase 	NA	NA	NA
PtpAffx.77829.1.A1_at	E	E	CK092005	CK092005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77835.1.S1_at	E	E	CK091770	CK091770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77844.1.S1_at	E	E	CK091536	CK091536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77901.1.A1_at	E	E	CK089560	CK089560	NA	NA	Q40459	"Oxygen-evolving enhancer protein 1, chloroplastic"	AT3G50820.1	photosystem II subunit O-2 	LOC_Os01g31690.1	"oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed"	Medtr5g018670.1	Photosystem II manganese-stabilizing protein PsbO 	NA	NA	NA
PtpAffx.77954.1.S1_x_at	E	E	AY302066.1	AY302066.1	NA	NA	Q940X7	RING-box protein 1a	AT5G20570.1	RING-box 1 	LOC_Os01g01700.1	"anaphase-promoting complex subunit 11, putative, expressed"	Medtr2g103850.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.78317.1.S1_at	E	E	BU816636	BU816636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7849.2.S1_at	E	E	CF228142	CF228142	NA	NA	P05478	18.5 kDa class I heat shock protein	AT5G59720.1	heat shock protein 18.2 	LOC_Os03g16030.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067320.1	HSP20-like chaperone 	NA	NA	NA
PtpAffx.78498.1.S1_at	E	E	CV234274	CV234274	scaffold_8:7105225-7106258(-) (11)	NA	Q9CAA9	Transcription factor bHLH49	AT1G68920.3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g29830.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr8g077090.1	Helix-loop-helix DNA-binding 	NA	NA	NA
PtpAffx.78615.1.S1_at	E	E	DN493036	DN493036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.78712.2.S1_a_at	E	E	BI068872	BI068872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.78778.1.S1_at	E	E	BU885332	BU885332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.78794.1.S1_at	E	E	BU825854	BU825854	NA	NA	Q9SSA7	GDSL esterase/lipase 5	AT1G53920.1	GDSL-motif lipase 5 	LOC_Os09g04710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g026270.1	"Lipolytic enzyme, G-D-S-L "	NA	NA	NA
PtpAffx.78910.1.S1_at	E	E	DN502107	DN502107	NA	NA	Q94C77	Receptor protein kinase-like protein At4g34220	AT4G34220.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g02250.1	"transposon protein, putative, unclassified, expressed"	Medtr5g026650.1	"Leucine-rich repeat, N-terminal "	NA	NA	NA
PtpAffx.7892.2.S1_at	E	E	BU871432	BU871432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7892.3.S1_a_at	E	E	CK111070	CK111070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7892.4.S1_a_at	E	E	CV258695	CV258695	scaffold_3:16016042-16016135(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7892.4.S1_at	E	E	CV258695	CV258695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7896.2.S1_at	E	E	CV244334	CV244334	NA	NA	P48386	Chalcone synthase 1	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr3g105290.1	"Chalcone and stilbene synthases, C-terminal "	NA	NA	NA
PtpAffx.79032.1.S1_at	E	E	BU872722	BU872722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.79104.1.S1_at	E	E	DN494661	DN494661	scaffold_3:3397810-3398175(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.79110.1.S1_a_at	E	E	CV244883	CV244883	NA	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os02g51450.2	"mTERF family protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	NA	NA	NA
PtpAffx.79284.1.S1_at	E	E	DN500218	DN500218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7931.3.A1_a_at	E	E	CV225633	CV225633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.79954.1.S1_at	E	E	CX177277	CX177277	NA	NA	Q792Q4	Cysteine-rich PDZ-binding protein	AT1G61780.1	postsynaptic protein-related 	LOC_Os08g09180.1	"postsynaptic protein CRIPT, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.79966.1.S1_at	E	E	CV256230	CV256230	NA	NA	Q94KJ7	Vacuolar protein sorting-associated protein 33 homolog	AT3G54860.2	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os04g14654.2	"Sec1 family transport protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.80014.1.S1_at	E	E	CV264509	CV264509	NA	NA	Q6TUG0	DnaJ homolog subfamily B member 11	AT3G62600.1	DNAJ heat shock family protein 	LOC_Os05g06440.1	"dnaJ homolog subfamily B member 11 precursor, putative, expressed"	Medtr7g132750.1	Heat shock protein DnaJ 	NA	NA	NA
PtpAffx.80045.1.S1_at	E	E	DN493332	DN493332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80051.1.S1_at	E	E	CK114587	CK114587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80069.1.S1_at	E	E	DN501927	DN501927	NA	NA	Q9LJK2	Abscisic acid 8'-hydroxylase 4	AT3G19270.1	"cytochrome P450, family 707, subfamily A, polypeptide 4 "	LOC_Os08g36860.1	"cytochrome P450, putative, expressed"	Medtr4g129800.1	Cytochrome P450 	NA	NA	NA
PtpAffx.80089.1.S1_at	E	E	DN491332	DN491332	scaffold_9:11761335-11761816(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80092.1.S1_at	E	E	BU882525	BU882525	scaffold_4:16114424-16114673(+) (11)	NA	NA	NA	AT2G15910.2	CSL zinc finger domain-containing protein 	LOC_Os06g45070.2	"diphthamide biosynthesis protein 3, putative, expressed"	Medtr4g092880.1	"Zinc finger, DHP-type "	NA	NA	NA
PtpAffx.80100.1.S1_at	E	E	CN524585	CN524585	scaffold_2:22323341-22323918(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80115.1.S1_at	E	E	BU810320	BU810320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80282.1.S1_at	E	E	DN493986	DN493986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80309.1.A1_at	E	E	DN492975	DN492975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80317.1.A1_at	E	E	DN492695	DN492695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80335.1.S1_at	E	E	DN501734	DN501734	scaffold_17:8753353-8753539(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80337.1.A1_at	E	E	DN491749	DN491749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80352.1.S1_at	E	E	BU883445	BU883445	scaffold_19:15701639-15702011(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80354.1.A1_at	E	E	DN491244	DN491244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80382.1.A1_at	E	E	DN489352	DN489352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80396.1.A1_at	E	E	DN488445	DN488445	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80454.1.A1_at	E	E	DN486101	DN486101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8052.1.S1_at	E	E	DN502744	DN502744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80650.1.A1_at	E	E	BP929948	BP929948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8091.3.S1_at	E	E	CF229967	CF229967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80932.1.S1_at	E	E	AJ778219	AJ778219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.811.2.S1_at	E	E	DN490714	DN490714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81137.1.S1_at	E	E	CV239049	CV239049	NA	NA	NA	NA	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g106920.1	UspA 	NA	NA	NA
PtpAffx.8131.2.S1_at	E	E	CV271730	CV271730	NA	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8131.8.S1_at	E	E	CV270594	CV270594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8133.1.A1_at	E	E	CK097751	CK097751	NA	NA	NA	NA	AT1G31440.1	SH3 domain-containing protein 	LOC_Os03g16000.1	"src homology-3 domain protein 3, putative, expressed"	Medtr5g026540.1	SH3 	NA	NA	NA
PtpAffx.81749.1.A1_at	E	E	CV274760	CV274760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8196.1.S1_a_at	E	E	BU887494	BU887494	NA	NA	Q8LPQ9	Flowering time control protein FPA	AT2G43410.4	RNA binding 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81970.3.A1_at	E	E	CV245645	CV245645	NA	NA	Q93XX8	H/ACA ribonucleoprotein complex subunit 3-like protein	AT2G20490.1	nucleolar RNA-binding Nop10p family protein 	LOC_Os02g40514.2	"h/ACA ribonucleoprotein complex subunit 3, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.822.2.S1_at	E	E	DN497195	DN497195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82289.1.A1_at	E	E	CV253047	CV253047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82319.1.A1_at	E	E	CV251911	CV251911	scaffold_4:18739841-18740246(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82338.1.A1_at	E	E	CV250838	CV250838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82363.1.A1_at	E	E	CV249739	CV249739	NA	NA	P35684	60S ribosomal protein L3	AT1G61580.1	R-protein L3 B 	LOC_Os12g07010.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.2	Translation factor 	NA	NA	NA
PtpAffx.82403.1.A1_s_at	E	E	CV247827	CV247827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82415.1.A1_at	E	E	CV247167	CV247167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82436.1.A1_at	E	E	CV245968	CV245968	scaffold_16:8575289-8575634(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82449.1.A1_at	E	E	CV245644	CV245644	NA	NA	Q8WWF8	Calcyphosin-like protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82456.1.A1_at	E	E	CV240539	CV240539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82463.1.A1_at	E	E	CV245286	CV245286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82470.1.A1_at	E	E	CV245220	CV245220	NA	NA	A4IGK4	RNA-binding protein 5	NA	NA	LOC_Os02g07070.1	"RNA recognition motif family protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.82485.1.A1_at	E	E	CV244571	CV244571	NA	NA	P15357	Ubiquitin-40S ribosomal protein S27a	AT3G62250.1	ubiquitin 5 	LOC_Os05g06770.1	"40S ribosomal protein S27a, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	NA	NA	NA
PtpAffx.82502.1.S1_a_at	E	E	BU834203	BU834203	scaffold_9:9461520-9461822(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82502.1.S1_at	E	E	BU834203	BU834203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82510.3.S1_at	E	E	BI126569	BI126569	NA	NA	NA	NA	AT5G08450.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). 	LOC_Os07g29450.1	expressed protein	Medtr7g035190.2	Histone deacetylation protein Rxt3 	NA	NA	NA
PtpAffx.82510.4.A1_at	E	E	CV225813	CV225813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82510.5.A1_at	E	E	CV243891	CV243891	NA	NA	NA	NA	AT5G08450.3	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). 	LOC_Os07g29450.1	expressed protein	Medtr7g035190.1	Histone deacetylation protein Rxt3 	NA	NA	NA
PtpAffx.82522.1.A1_at	E	E	CV243551	CV243551	scaffold_11:11128144-11128613(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82537.1.A1_at	E	E	CV242870	CV242870	NA	NA	Q9SJC4	Nudix hydrolase 6	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.3	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g141000.2	NUDIX hydrolase 	NA	NA	NA
PtpAffx.82540.1.A1_at	E	E	CV242781	CV242781	NA	NA	Q1HPQ0	Tropomyosin-2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82549.1.A1_at	E	E	CV242455	CV242455	NA	NA	Q6Z461	Squamosa promoter-binding-like protein 13	AT3G15270.1	squamosa promoter binding protein-like 5 	LOC_Os07g32170.1	"OsSPL13 - SBP-box gene family member, expressed"	Medtr7g111590.1	SBP 	NA	NA	NA
PtpAffx.82555.1.A1_at	E	E	CV242216	CV242216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82559.1.A1_at	E	E	CV242109	CV242109	NA	NA	P09234	U1 small nuclear ribonucleoprotein C	AT4G03120.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os02g16640.1	"proline-rich protein HaeIII subfamily 1 precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.82626.1.A1_at	E	E	CV239761	CV239761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82714.1.A1_at	E	E	CV235665	CV235665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82740.1.A1_at	E	E	CV234473	CV234473	NA	NA	Q9FHW7	SKP1-like protein 1B	AT5G42190.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 	LOC_Os11g26910.1	"SKP1-like protein 1B, putative, expressed"	Medtr5g022610.1	SKP1 component 	NA	NA	NA
PtpAffx.82822.1.A1_at	E	E	CV275303	CV275303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82839.1.A1_at	E	E	CV230636	CV230636	scaffold_5:18127492-18127750(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82869.1.A1_at	E	E	CV229063	CV229063	scaffold_10:17923242-17924360(-) (9)//scaffold_19:9803272-9804412(-) (9)//scaffold_6:9421639-9422761(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82877.1.A1_at	E	E	CV228874	CV228874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82942.1.A1_at	E	E	CV226435	CV226435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82948.1.A1_at	E	E	CV226169	CV226169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82963.1.A1_s_at	E	E	CV237729	CV237729	scaffold_18:13165240-13165513(-) (11)	NA	NA	NA	AT5G35430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g03600.1	"immunoglobulin/major histocompatibility complex, putative, expressed"	Medtr8g121410.1	Tetratricopeptide-like helical 	NA	NA	NA
PtpAffx.8387.1.S1_at	E	E	BU886292	BU886292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.83908.1.S1_at	E	E	BU824286	BU824286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.83951.1.S1_at	E	E	CK106707	CK106707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84170.1.A1_at	E	E	CK096474	CK096474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84276.1.A1_at	E	E	CK092613	CK092613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84340.1.A1_at	E	E	CK089707	CK089707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84496.1.S1_at	E	E	BU826924	BU826924	NA	NA	Q9SF29	Syntaxin-71	AT3G09740.1	syntaxin of plants 71 	LOC_Os05g48020.1	"SNARE domain containing protein, putative, expressed"	Medtr1g078960.1	Syntaxin/epimorphin family 	NA	NA	NA
PtpAffx.849.3.A1_a_at	E	E	CA822022	CA822022	NA	NA	Q96499	60S ribosomal protein L44	AT4G14320.2	Zinc-binding ribosomal protein family protein 	LOC_Os07g33860.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	NA	NA	NA
PtpAffx.849.5.A1_at	E	E	CV270817	CV270817	NA	NA	Q96499	60S ribosomal protein L44	AT4G14320.2	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	NA	NA	NA
PtpAffx.85054.1.S1_at	E	E	DN493112	DN493112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85062.1.S1_at	E	E	DN502982	DN502982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85207.1.S1_at	E	E	DN488463	DN488463	scaffold_12:9267593-9267811(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8549.4.S1_at	E	E	CV226406	CV226406	NA	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	NA	NA	NA
PtpAffx.85710.1.S1_at	E	E	DN489241	DN489241	NA	NA	NA	NA	AT5G60250.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os11g01240.1	IBR domain containing protein	Medtr4g080390.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	NA	NA
PtpAffx.85859.1.S1_at	E	E	CK106309	CK106309	NA	NA	B9NAN0	"Arginine biosynthesis bifunctional protein ArgJ, chloroplastic"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85862.1.S1_at	E	E	CK106263	CK106263	NA	NA	Q9SZB9	Peroxidase 47	AT4G33420.1	Peroxidase superfamily protein 	LOC_Os08g02110.1	"peroxidase precursor, putative, expressed"	Medtr7g035100.1	"Haem peroxidase, plant/fungal/bacterial "	NA	NA	NA
PtpAffx.85934.1.S1_at	E	E	DN495618	DN495618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85937.1.A1_s_at	E	E	CV229820	CV229820	scaffold_4:16556249-16556283(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85994.1.S1_at	E	E	DN500500	DN500500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86475.1.S1_at	E	E	DN493076	DN493076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86482.1.S1_at	E	E	DN492474	DN492474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86487.1.S1_at	E	E	DN492329	DN492329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86522.1.S1_at	E	E	BU882907	BU882907	scaffold_9:10467593-10467925(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86539.1.S1_at	E	E	DN500571	DN500571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86591.1.S1_at	E	E	DN498052	DN498052	scaffold_18:9792931-9793051(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86602.1.S1_at	E	E	DN487786	DN487786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86734.1.S1_at	E	E	DN502648	DN502648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86755.1.A1_at	E	E	DN491806	DN491806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86768.1.A1_at	E	E	DN491516	DN491516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86791.1.A1_at	E	E	DN490515	DN490515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86807.1.A1_at	E	E	DN489676	DN489676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86831.1.A1_at	E	E	CV248619	CV248619	NA	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	NA	NA	NA
PtpAffx.86838.1.A1_at	E	E	DN488017	DN488017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86839.1.A1_at	E	E	DN487980	DN487980	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86860.1.S1_at	E	E	DN496809	DN496809	NA	NA	P28475	NADP-dependent D-sorbitol-6-phosphate dehydrogenase	AT2G21250.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os02g03100.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g097480.1	Aldo/keto reductase 	NA	NA	NA
PtpAffx.86934.1.A1_at	E	E	DN484221	DN484221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86939.2.S1_at	E	E	CV236365	CV236365	NA	NA	Q9CAQ2	Uncharacterized protein At1g77540	AT1G77540.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os04g35200.1	expressed protein	Medtr3g100520.1	"Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From, putative "	NA	NA	NA
PtpAffx.87114.1.A1_at	E	E	BP931582	BP931582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8720.1.S1_at	E	E	CV233916	CV233916	NA	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	NA	NA	NA
PtpAffx.87609.1.S1_at	E	E	CN192911	CN192911	NA	NA	NA	NA	AT1G60470.1	galactinol synthase 4 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	NA	NA
PtpAffx.878.2.A1_at	E	E	BP932007	BP932007	NA	NA	P50346	60S acidic ribosomal protein P0	AT3G09200.2	Ribosomal protein L10 family protein 	LOC_Os12g03880.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr5g089540.1	Ribosomal protein L10; Ribosomal protein 60S 	NA	NA	NA
PtpAffx.880.6.S1_at	E	E	CV239590	CV239590	NA	NA	P26518	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G13440.1	glyceraldehyde-3-phosphate dehydrogenase C2 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	NA	NA	NA
PtpAffx.88112.1.S1_at	E	E	CK104232	CK104232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88265.1.A1_at	E	E	CV274348	CV274348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88308.1.A1_at	E	E	CV272767	CV272767	NA	NA	Q38772	Cell division control protein 2 homolog A	AT3G48750.1	cell division control 2 	LOC_Os02g03060.1	"cyclin-dependent kinase A-2, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.884.1.S1_at	E	E	CV265646	CV265646	scaffold_4:5419581-5419778(-) (11)	NA	Q6R3K4	Probable metal-nicotianamine transporter YSL8	AT1G48370.1	YELLOW STRIPE like 8 	LOC_Os04g44320.1	"transposon protein, putative, unclassified, expressed"	Medtr5g098780.1	Oligopeptide transporter OPT superfamily 	NA	NA	NA
PtpAffx.8857.2.A1_a_at	E	E	CK095664	CK095664	scaffold_1:46366087-46366588(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88739.1.A1_at	E	E	CV254762	CV254762	scaffold_13:13568198-13568473(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88743.1.A1_at	E	E	DN487892	DN487892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88797.1.A1_at	E	E	CV252376	CV252376	scaffold_1:22647165-22647608(-) (10)//scaffold_1:22688840-22689308(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88902.1.A1_at	E	E	CV247260	CV247260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8891.4.A1_at	E	E	BU813820	BU813820	NA	NA	O22518	40S ribosomal protein SA	AT1G72370.2	40s ribosomal protein SA 	LOC_Os07g42450.1	"ribosomal protein S2, putative, expressed"	Medtr3g143830.1	"Ribosomal protein S2, eukaryotic and archaeal form "	NA	NA	NA
PtpAffx.88912.1.A1_at	E	E	CV246887	CV246887	scaffold_9:7109989-7110158(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88922.1.A1_a_at	E	E	CV241822	CV241822	scaffold_10:18863550-18863938(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88937.1.A1_at	E	E	CV245424	CV245424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88942.1.A1_at	E	E	CV245091	CV245091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88962.1.A1_at	E	E	CV244179	CV244179	NA	NA	Q91V92	ATP-citrate synthase	AT5G49460.1	ATP citrate lyase subunit B 2 	LOC_Os01g19450.2	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	NA	NA	NA
PtpAffx.89034.1.A1_at	E	E	CV241259	CV241259	scaffold_8:14380744-14381183(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.89036.1.A1_at	E	E	CV241245	CV241245	scaffold_1:10839520-10839855(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.89039.1.A1_at	E	E	CV241173	CV241173	NA	NA	NA	NA	NA	NA	LOC_Os09g08750.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr4g041210.1	"RNA-directed DNA polymerase (Reverse transcriptase); Peptidase aspartic, active site; Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.89043.1.A1_at	E	E	CV240974	CV240974	NA	NA	Q2YGT9	60S ribosomal protein L6	AT1G18540.1	Ribosomal protein L6 family protein 	LOC_Os02g37862.1	"60S ribosomal protein L6, putative, expressed"	Medtr3g144820.1	"Ribosomal protein L6E; Ribosomal protein L6, N-terminal "	NA	NA	NA
PtpAffx.89046.1.A1_at	E	E	CV240945	CV240945	NA	NA	P15357	Ubiquitin-40S ribosomal protein S27a	AT1G23410.1	Ribosomal protein S27a / Ubiquitin family protein 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr4g136600.1	Ubiquitin; Ribosomal protein S27a 	NA	NA	NA
PtpAffx.89058.1.A1_at	E	E	CV240645	CV240645	NA	NA	Q93113	"Glutathione S-transferase 1, isoform D"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.89081.1.A1_at	E	E	CV239861	CV239861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.89094.1.A1_at	E	E	CV239224	CV239224	scaffold_3:10500396-10500845(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.89139.1.A1_at	E	E	CV236863	CV236863	NA	NA	Q5F4B1	Phosphoglycolate phosphatase	AT5G36700.4	2-phosphoglycolate phosphatase 1 	LOC_Os04g41340.1	"4-nitrophenylphosphatase, putative, expressed"	Medtr7g090150.2	"HAD-superfamily hydrolase, subfamily IIA "	NA	NA	NA
PtpAffx.8914.1.S1_at	E	E	BU816761	BU816761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.89272.1.A1_at	E	E	CV231191	CV231191	NA	NA	NA	NA	AT2G21520.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os05g46720.2	"phosphatidylinositol transfer, putative, expressed"	Medtr3g162710.3	"phosphatidylinositol transfer-like protein III, putative "	NA	NA	NA
PtpAffx.89275.1.A1_at	E	E	CV231049	CV231049	scaffold_14:9838475-9838694(-) (9)//scaffold_2:17875865-17876123(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8929.1.A1_at	E	E	DN485457	DN485457	NA	NA	Q9LFG2	"Diaminopimelate epimerase, chloroplastic"	AT3G53580.1	diaminopimelate epimerase family protein 	LOC_Os12g37960.2	"diaminopimelate epimerase, chloroplast precursor, putative, expressed"	Medtr7g077770.1	Diaminopimelate epimerase 	NA	NA	NA
PtpAffx.8934.1.S1_at	E	E	DN500885	DN500885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8952.2.S1_at	E	E	BU810871	BU810871	NA	NA	NA	NA	AT3G43240.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os09g26390.1	"AT-rich interaction region, putative, expressed"	Medtr2g052110.1	"AT-rich interaction region; Zinc finger, FYVE/PHD-type "	NA	NA	NA
PtpAffx.89685.1.S1_at	E	E	AJ775274	AJ775274	NA	NA	Q9AV81	U-box domain-containing protein 72	AT1G04510.1	MOS4-associated  complex 3A 	LOC_Os10g32880.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g065090.1	U box; ; 	NA	NA	NA
PtpAffx.89793.1.S1_at	E	E	CK091218	CK091218	NA	NA	P45350	Bifunctional dihydrofolate reductase-thymidylate synthase	AT4G34570.1	thymidylate synthase 2 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	NA	NA	NA
PtpAffx.8992.1.S1_at	E	E	CV265416	CV265416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.89966.2.A1_at	E	E	BP935540	BP935540	NA	NA	NA	NA	AT5G22790.1	reticulata-related 1 	LOC_Os04g44290.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.90084.1.S1_at	E	E	CX170622	CX170622	NA	NA	NA	NA	AT5G27860.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). 	LOC_Os12g36740.1	"splicing factor, arginine/serine-rich 18, putative, expressed"	Medtr7g138420.1	"zgc:136322 protein, related "	NA	NA	NA
PtpAffx.90513.3.S1_at	E	E	CK094600	CK094600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90543.1.A1_at	E	E	CK093072	CK093072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9055.4.S1_at	E	E	BU874185	BU874185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90554.1.S1_at	E	E	CK092560	CK092560	NA	NA	NA	NA	AT3G10180.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g25380.1	"kinesin motor protein-related, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.90642.2.A1_a_at	E	E	CK091213	CK091213	scaffold_9:2022884-2023287(+) (11)	NA	NA	NA	AT5G60710.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g56280.1	"zinc finger family protein, putative, expressed"	Medtr1g120670.1	"Zinc finger, RING-type; von Willebrand factor, type A "	NA	NA	NA
PtpAffx.90695.1.A1_at	E	E	CK096557	CK096557	NA	NA	NA	NA	AT2G41250.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g46520.1	"rhythmically expressed gene 2 protein, putative, expressed"	Medtr7g107400.1	"HAD-superfamily subfamily IA hydrolase, REG-2-like "	NA	NA	NA
PtpAffx.9076.3.A1_at	E	E	DN487549	DN487549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90832.1.A1_at	E	E	CK089710	CK089710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90835.1.A1_at	E	E	CK089474	CK089474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90843.1.A1_at	E	E	CK088597	CK088597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.91093.1.A1_s_at	E	E	CV241325	CV241325	NA	NA	P29757	Cytochrome b	ATMG00220.1	apocytochrome b 	LOC_Os10g21324.1	"cytochrome b6, putative"	Medtr1g006930.1	"Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal "	NA	NA	NA
PtpAffx.91273.1.A1_at	E	E	CA933478	CA933478	NA	NA	Q9FWR2	Pyrophosphate-energized membrane proton pump 3	AT1G16780.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g33490.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.2	Inorganic H+ pyrophosphatase 	NA	NA	NA
PtpAffx.91656.1.S1_at	E	E	DN493318	DN493318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.91671.1.S1_at	E	E	CV267166	CV267166	scaffold_8:16464547-16465440(+) (10)	NA	A3KPF2	Probable histone-arginine methyltransferase CARM1B	AT5G49020.1	protein arginine methyltransferase 4A 	LOC_Os07g47500.1	"histone-arginine methyltransferase CARM1, putative, expressed"	Medtr8g138750.1	Methyltransferase small 	NA	NA	NA
PtpAffx.9205.2.S1_at	E	E	CK094267	CK094267	NA	NA	NA	NA	AT3G07270.2	GTP cyclohydrolase I 	LOC_Os04g56710.1	"GTP cyclohydrolase I 1, putative, expressed"	Medtr7g062120.1	GTP cyclohydrolase I 	NA	NA	NA
PtpAffx.92175.1.A1_at	E	E	BU834866	BU834866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.922.3.S1_at	E	E	CF236868	CF236868	NA	NA	Q54DS8	Protein transport protein SEC13	AT3G01340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g04320.2	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.92249.1.A1_at	E	E	DN490362	DN490362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92354.1.S1_at	E	E	CK106421	CK106421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92521.2.S1_at	E	E	DN503116	DN503116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92537.1.A1_at	E	E	CV276205	CV276205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92678.2.A1_a_at	E	E	CV261170	CV261170	NA	NA	Q9QUR6	Prolyl endopeptidase	AT1G76140.1	Prolyl oligopeptidase family protein 	LOC_Os01g01830.1	"OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed"	NA	NA	NA	NA	NA
PtpAffx.92734.1.S1_at	E	E	CV267713	CV267713	NA	NA	NA	NA	AT3G07565.1	Protein of unknown function (DUF3755) 	LOC_Os04g41830.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr3g025420.1	hypothetical protein 	NA	NA	NA
PtpAffx.92928.1.S1_at	E	E	CV241954	CV241954	NA	NA	Q9LD43	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic"	AT2G38040.2	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92956.1.S1_at	E	E	CX168705	CX168705	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g005530.1	hypothetical protein 	NA	NA	NA
PtpAffx.92956.1.S1_s_at	E	E	CX168705	CX168705	scaffold_4:22072601-22073932(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr2g005530.1	hypothetical protein 	NA	NA	NA
PtpAffx.92972.1.S1_at	E	E	DN503569	DN503569	NA	NA	A4GYP6	"ATP synthase subunit a, chloroplastic"	ATCG00150.1	"ATPase, F0 complex, subunit A protein "	LOC_Os10g38276.1	"chloroplast ATP synthase a chain precursor, putative"	Medtr4g042300.1	"H+-transporting two-sector ATPase, A subunit "	NA	NA	NA
PtpAffx.92989.1.S1_a_at	E	E	DN493075	DN493075	scaffold_17:655294-655682(-) (11)	NA	NA	NA	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g50640.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.93002.1.S1_at	E	E	BU879026	BU879026	scaffold_17:5996469-5996976(+) (11)//scaffold_6:17521327-17521834(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93188.1.S1_at	E	E	CF232399	CF232399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93244.1.S1_at	E	E	DN493180	DN493180	scaffold_9:10291182-10291395(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9325.3.A1_a_at	E	E	CV261752	CV261752	NA	NA	Q1SF86	Ubiquitin-like protein ATG12	AT1G54210.1	Ubiquitin-like superfamily protein 	LOC_Os06g10340.1	"autophagy-related protein 12, putative, expressed"	Medtr8g024660.1	Autophagy protein Apg12 	NA	NA	NA
PtpAffx.93287.1.S1_at	E	E	DN491511	DN491511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93288.1.A1_at	E	E	DN491510	DN491510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93317.1.A1_at	E	E	DN490414	DN490414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93339.1.S1_at	E	E	DN499104	DN499104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93502.1.A1_at	E	E	BP935527	BP935527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.936.3.S1_a_at	E	E	CV228562	CV228562	scaffold_10:9838634-9838714(+) (11)//scaffold_11:6928287-6928367(-) (11)//scaffold_11:6937424-6937504(-) (11)//scaffold_13:4431512-4431592(-) (11)//scaffold_6:916847-916927(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94601.1.A1_at	E	E	CV280245	CV280245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9473.1.A1_at	E	E	DN492006	DN492006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94732.1.A1_at	E	E	CV273998	CV273998	scaffold_18:11500282-11501377(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9507.1.A1_at	E	E	CV258887	CV258887	NA	NA	NA	NA	AT1G76980.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 61 Blast hits to 61 proteins in 18 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 2; Plants - 40; Viruses - 3; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95096.1.A1_at	E	E	CV260012	CV260012	NA	NA	Q7XA40	Putative disease resistance protein RGA3	NA	NA	NA	NA	Medtr5g079990.1	Leucine-rich repeat 	NA	NA	NA
PtpAffx.9525.2.S1_at	E	E	DN486467	DN486467	NA	NA	NA	NA	AT4G34150.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os06g43190.1	"retrotransposon protein, putative, unclassified, expressed"	AC151525_7.1	C2 AC151525.18 31176-29302 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.95361.1.A1_s_at	E	E	CV250101	CV250101	scaffold_13:1917522-1917558(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95407.1.A1_at	E	E	CV247468	CV247468	NA	NA	Q9AT35	60S ribosomal protein L23a	AT2G39460.2	ribosomal protein L23AA 	LOC_Os04g42270.3	"60S ribosomal protein L23A, putative, expressed"	Medtr2g114400.1	"Ribosomal protein L23, N-terminal; Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.95417.1.A1_at	E	E	CV246940	CV246940	NA	NA	NA	NA	AT3G03440.1	ARM repeat superfamily protein 	LOC_Os01g02200.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g087030.1	Armadillo 	NA	NA	NA
PtpAffx.95443.1.A1_at	E	E	CV245668	CV245668	NA	NA	NA	NA	AT1G55310.3	SC35-like splicing factor 33 	LOC_Os03g25770.2	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.95470.1.A1_at	E	E	CV244731	CV244731	NA	NA	Q29GR8	Moesin/ezrin/radixin homolog 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95499.1.A1_at	E	E	CV243725	CV243725	scaffold_18:6078436-6078778(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95500.1.A1_at	E	E	CV243681	CV243681	NA	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr8g125260.1	"LIM, zinc-binding "	NA	NA	NA
PtpAffx.95506.1.A1_at	E	E	CV243474	CV243474	scaffold_12:10294526-10296789(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95509.1.A1_at	E	E	CV243410	CV243410	scaffold_9:8986674-8987021(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95510.1.A1_at	E	E	CV243370	CV243370	scaffold_2:12025816-12025954(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95511.1.A1_at	E	E	CV243368	CV243368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95512.1.A1_at	E	E	CV243267	CV243267	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g116870.1	GRAS transcription factor 	NA	NA	NA
PtpAffx.95516.1.A1_at	E	E	CV243162	CV243162	scaffold_1:3283331-3283874(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95521.1.A1_at	E	E	CV242908	CV242908	NA	NA	Q5DC69	"10 kDa heat shock protein, mitochondrial"	AT1G14980.1	chaperonin 10 	LOC_Os03g25050.1	"chaperonin, putative, expressed"	AC225518_13.1	GroES-like AC225518.12 38278-37581 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.95531.1.A1_at	E	E	CV242544	CV242544	NA	NA	O61231	60S ribosomal protein L10	AT1G66580.1	senescence associated gene 24 	LOC_Os03g21470.1	"ribosomal protein, putative, expressed"	Medtr2g132470.1	Ribosomal protein L10E 	NA	NA	NA
PtpAffx.95548.1.A1_at	E	E	CV242094	CV242094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95550.1.A1_at	E	E	CV242077	CV242077	scaffold_2:8644067-8644427(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95559.1.A1_at	E	E	CV241743	CV241743	scaffold_3:18409351-18410663(-) (10)	NA	Q6NLV4	Flowering time control protein FY	AT5G13480.1	Transducin/WD40 repeat-like superfamily protein 	NA	NA	Medtr8g039570.1	"WD repeat-containing protein 33, putative "	NA	NA	NA
PtpAffx.95565.1.A1_at	E	E	CV241567	CV241567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95565.1.A1_s_at	E	E	CV241567	CV241567	scaffold_15:4105141-4105611(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95632.1.A1_at	E	E	CV238967	CV238967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95723.1.A1_at	E	E	CV235332	CV235332	NA	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	NA	NA	NA
PtpAffx.95733.1.A1_at	E	E	CV235000	CV235000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95742.1.A1_at	E	E	CV234671	CV234671	NA	NA	NA	NA	AT2G39900.1	GATA type zinc finger transcription factor family protein 	LOC_Os03g15940.1	"OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.2	"LIM, zinc-binding "	NA	NA	NA
PtpAffx.95819.1.A1_at	E	E	CV231569	CV231569	NA	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT5G54940.2	Translation initiation factor SUI1 family protein 	LOC_Os07g34589.3	"translation initiation factor SUI1, putative, expressed"	Medtr3g068670.1	Eukaryotic translation initiation factor SUI1 	NA	NA	NA
PtpAffx.95830.1.A1_at	E	E	CV231147	CV231147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95857.1.A1_at	E	E	CV230096	CV230096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95863.1.A1_at	E	E	CV229888	CV229888	scaffold_13:1233880-1234219(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95910.1.A1_at	E	E	CV228173	CV228173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95925.1.A1_at	E	E	CV227444	CV227444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95954.1.A1_at	E	E	CV226424	CV226424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.96247.1.S1_at	E	E	CN520956	CN520956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.96310.1.S1_at	E	E	CV262325	CV262325	scaffold_6:2993280-2994781(+) (11)	NA	NA	NA	AT3G10160.1	DHFS-FPGS homolog C 	LOC_Os10g35940.2	"folylpolyglutamate synthetase, putative, expressed"	Medtr5g088540.1	Folylpolyglutamate synthetase 	NA	NA	NA
PtpAffx.96420.1.S1_at	E	E	AJ767905	AJ767905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.96516.1.S1_at	E	E	CK088002	CK088002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9663.1.S1_at	E	E	DN494827	DN494827	scaffold_11:15620184-15629626(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9675.1.A1_at	E	E	DN484804	DN484804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.96941.1.S1_at	E	E	CK107138	CK107138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.970.1.A1_at	E	E	CV259374	CV259374	NA	NA	NA	NA	AT2G18910.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr8g129280.1	"hydroxyproline-rich glycoprotein family protein, putative "	NA	NA	NA
PtpAffx.9700.1.S1_at	E	E	DN503040	DN503040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97061.1.A1_at	E	E	CK090386	CK090386	NA	NA	NA	NA	AT4G01000.1	Ubiquitin-like superfamily protein 	LOC_Os01g48930.2	"splicing factor-related, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.97175.1.A1_at	E	E	CK096655	CK096655	NA	NA	Q8L796	Phosphatidylinositol-4-phosphate 5-kinase 2	AT1G77740.1	phosphatidylinositol-4-phosphate 5-kinase 2 	LOC_Os03g49800.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr3g098240.1	Phosphatidylinositol-4-phosphate 5-kinase 	NA	NA	NA
PtpAffx.9718.1.S1_at	E	E	BU886551	BU886551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97185.1.S1_at	E	E	BU819818	BU819818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9719.1.S1_at	E	E	DN492334	DN492334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97193.1.A1_at	E	E	CK095985	CK095985	NA	NA	Q9SE97	Formin-like protein 1	AT3G25500.1	formin homology 1 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr7g092450.1	Actin-binding FH2 	NA	NA	NA
PtpAffx.97221.1.A1_at	E	E	CK095318	CK095318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97275.1.A1_at	E	E	CK092418	CK092418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97290.1.A1_at	E	E	CK091622	CK091622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9734.1.A1_at	E	E	DN491892	DN491892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9746.1.A1_at	E	E	DN491574	DN491574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97461.1.S1_at	E	E	DN492311	DN492311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9754.1.A1_at	E	E	DN491416	DN491416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9773.1.A1_at	E	E	DN490927	DN490927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9781.1.S1_at	E	E	DN500390	DN500390	scaffold_15:8630788-8631128(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9787.1.S1_at	E	E	DN490063	DN490063	NA	NA	P43298	Probable receptor protein kinase TMK1	AT1G66150.1	transmembrane kinase 1 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr5g085220.1	Protein kinase 	NA	NA	NA
PtpAffx.9796.1.A1_at	E	E	DN489629	DN489629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9803.1.S1_at	E	E	DN499056	DN499056	scaffold_411:15290-15331(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9816.1.S1_at	E	E	DN488409	DN488409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9819.1.S1_at	E	E	DN497878	DN497878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9823.1.S1_s_at	E	E	BU887448	BU887448	NA	NA	Q94CI6	Sugar transporter ERD6-like 18	AT5G27360.1	Major facilitator superfamily protein 	LOC_Os03g24860.1	"transporter family protein, putative, expressed"	Medtr7g139760.1	Sugar transporter superfamily 	NA	NA	NA
PtpAffx.9826.1.S1_at	E	E	DN487836	DN487836	NA	NA	Q8LG88	Tonoplast dicarboxylate transporter	AT5G47560.1	tonoplast dicarboxylate transporter 	LOC_Os09g31130.1	"citrate transporter, putative, expressed"	Medtr8g147910.1	Sodium/sulphate symporter 	NA	NA	NA
PtpAffx.98422.1.S1_at	E	E	CK113928	CK113928	scaffold_1:38313873-38314285(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9845.1.S1_a_at	E	E	DN496771	DN496771	scaffold_2:14759063-14759410(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9845.2.A1_at	E	E	CV239201	CV239201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9864.2.A1_a_at	E	E	DN490861	DN490861	scaffold_2:7897080-7897650(-) (11)	NA	NA	NA	AT2G22680.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os04g01160.1	"zinc finger family protein, putative, expressed"	Medtr3g127640.1	"Zinc finger, RING-type; von Willebrand factor, type A; Immunoglobulin/major histocompatibility complex "	NA	NA	NA
PtpAffx.9869.1.S1_a_at	E	E	DN496019	DN496019	scaffold_14:7148190-7148581(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9876.1.S1_at	E	E	AJ773478	AJ773478	NA	NA	NA	NA	AT4G33110.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g37610.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr3g139610.2	Methyltransferase type 11 	NA	NA	NA
PtpAffx.9887.3.S1_at	E	E	BU810796	BU810796	NA	NA	Q8QZR1	Tyrosine aminotransferase	AT2G20610.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	NA	NA	NA
PtpAffx.9888.3.S1_at	E	E	CK109569	CK109569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9889.1.A1_at	E	E	BP931052	BP931052	NA	NA	NA	NA	AT5G14120.1	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	NA	NA	NA
PtpAffx.98926.1.S1_at	E	E	DN496423	DN496423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98943.1.S1_at	E	E	DN485450	DN485450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98950.1.S1_at	E	E	BU812649	BU812649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9898.1.A1_at	E	E	DN485180	DN485180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9921.5.A1_at	E	E	DN485568	DN485568	NA	NA	Q9C977	"Pentatricopeptide repeat-containing protein At1g80270, mitochondrial"	AT1G80270.3	PENTATRICOPEPTIDE REPEAT 596 	NA	NA	Medtr1g068480.1	Pentatricopeptide repeat 	NA	NA	NA
PtpAffx.99333.1.S1_at	E	E	CV231730	CV231730	NA	NA	Q93ZW0	"Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic"	AT1G09420.2	glucose-6-phosphate dehydrogenase 4 	LOC_Os03g20300.3	"glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed"	AC235094_5.1	Glucose-6-phosphate dehydrogenase AC235094.1 27378-26030 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.99481.1.S1_at	E	E	DN492307	DN492307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99487.1.S1_at	E	E	BU879126	BU879126	scaffold_12:2531375-2531752(+) (9)	NA	NA	NA	AT4G27680.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g50050.1	"AAA-type ATPase family protein, putative"	NA	NA	NA	NA	NA
PtpAffx.99492.1.S1_at	E	E	DN492131	DN492131	scaffold_6:16514011-16514509(-) (11)//scaffold_6:16519009-16519507(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99497.1.A1_at	E	E	CV244017	CV244017	scaffold_411:2315-2712(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99535.1.S1_at	E	E	DN500539	DN500539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99537.1.S1_at	E	E	DN500501	DN500501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99553.1.S1_at	E	E	BU835045	BU835045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99565.1.S1_at	E	E	BU831899	BU831899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99584.1.S1_at	E	E	DN488434	DN488434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99585.1.S1_at	E	E	BU887232	BU887232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99594.1.A1_at	E	E	CV258458	CV258458	NA	NA	P93280	Putative cytochrome c biogenesis ccmB-like mitochondrial protein	ATMG00110.1	cytochrome C biogenesis 206 	NA	NA	Medtr1g007290.1	Cytochrome c-type biogenesis protein CcmB 	NA	NA	NA
PtpAffx.99662.1.S1_at	E	E	DN485904	DN485904	NA	NA	P18253	Peptidyl-prolyl cis-trans isomerase	AT5G58710.1	rotamase CYP 7 	LOC_Os06g49480.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	NA	NA
PtpAffx.99667.1.S1_at	E	E	DN485593	DN485593	NA	NA	Q10RB4	Beta-galactosidase 5	AT4G36360.1	beta-galactosidase 3 	LOC_Os03g06940.1	"beta-galactosidase, putative, expressed"	Medtr5g021090.2	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	NA	NA	NA
PtpAffx.99679.1.S1_at	E	E	DN485085	DN485085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99705.1.A1_at	E	E	DN493189	DN493189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99769.1.A1_at	E	E	DN490774	DN490774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99784.1.A1_at	E	E	CK089185	CK089185	NA	NA	Q3E9A4	Probable glycosyltransferase At5g20260	AT5G20260.1	Exostosin family protein 	LOC_Os02g39960.1	"exostosin family protein, putative"	Medtr8g121620.1	Exostosin-like 	NA	NA	NA
PtpAffx.99791.1.A1_at	E	E	DN489431	DN489431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99830.1.A1_at	E	E	DN487561	DN487561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99879.1.S1_at	E	E	DN486080	DN486080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99959.1.A1_s_at	E	E	BP930961	BP930961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1040.1.A1_at	R	R	CK090188	CK090188	NA	NA	NA	NA	AT5G10780.1	"CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	NA	NA	NA	NA	NA	NA	NA
Ptp.1112.2.S1_at	R	R	CK094585	CK094585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1136.2.A1_at	R	R	CV260490	CV260490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1184.1.A1_at	R	R	CV278727	CV278727	NA	NA	NA	NA	AT5G50890.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g54810.1	"lipase, putative, expressed"	Medtr5g098440.1	"lipase class 3 family protein, related "	NA	NA	NA
Ptp.1186.1.A1_at	R	R	CK089848	CK089848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1272.1.S1_at	R	R	CK091943	CK091943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1284.1.A1_at	R	R	CK090085	CK090085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1341.2.A1_at	R	R	CK088238	CK088238	NA	NA	O24540	4-coumarate--CoA ligase	AT1G51680.1	4-coumarate:CoA ligase 1 	LOC_Os08g34790.1	"AMP-binding domain containing protein, expressed"	Medtr4g023340.1	AMP-dependent synthetase and ligase 	NA	NA	NA
Ptp.1391.2.A1_at	R	R	CK092019	CK092019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1422.2.S1_at	R	R	BU826203	BU826203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1422.2.S1_s_at	R	R	BU826203	BU826203	scaffold_12:7251235-7251305(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1426.1.S1_at	R	R	CK109003	CK109003	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g006960.1	hypothetical protein 	NA	NA	NA
Ptp.1454.1.S1_at	R	R	CK112490	CK112490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1459.1.A1_at	R	R	CK092139	CK092139	NA	NA	NA	NA	AT4G25620.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g57610.1	expressed protein	NA	NA	NA	NA	NA
Ptp.1461.1.S1_at	R	R	CK111737	CK111737	NA	NA	P26859	"60S ribosomal protein L2, mitochondrial"	NA	NA	NA	NA	Medtr2g018780.1	Ribosomal protein L2 	NA	NA	NA
Ptp.1530.2.S1_at	R	R	CV275851	CV275851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1530.3.S1_x_at	R	R	CB239529	CB239529	NA	NA	P93276	Uncharacterized mitochondrial protein AtMg00030	ATMG00030.1	hypothetical protein 	NA	NA	Medtr1g007230.1	hypothetical protein 	NA	NA	NA
Ptp.1551.3.A1_at	R	R	CK093450	CK093450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1552.1.S1_s_at	R	R	DN487944	DN487944	NA	NA	O24301	Sucrose synthase 2	AT4G02280.1	sucrose synthase 3 	LOC_Os03g22120.3	"sucrose synthase, putative, expressed"	Medtr1g108040.1	Sucrose synthase 	NA	NA	NA
Ptp.1564.1.S1_at	R	R	CK109756	CK109756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1578.1.S1_at	R	R	CK109745	CK109745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1590.1.S1_a_at	R	R	DN493242	DN493242	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g006780.1	hypothetical protein 	NA	NA	NA
Ptp.1632.1.A1_at	R	R	CK092408	CK092408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1640.1.S1_at	R	R	CX654231	CX654231	NA	NA	Q42884	"Chorismate synthase 1, chloroplastic"	AT1G48850.1	"chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative "	LOC_Os03g14990.1	"chorismate synthase 2, chloroplast precursor, putative, expressed"	Medtr1g121150.1	Chorismate synthase 	NA	NA	NA
Ptp.1725.1.A1_at	R	R	CK093265	CK093265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1749.1.A1_at	R	R	CK093645	CK093645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1774.1.A1_at	R	R	CK092168	CK092168	NA	NA	NA	NA	AT4G24040.1	trehalase 1 	LOC_Os10g37660.1	"trehalase precursor, putative, expressed"	NA	NA	NA	NA	NA
Ptp.1804.1.A1_at	R	R	CK092822	CK092822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1808.1.A1_at	R	R	CK092856	CK092856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1927.1.A1_at	R	R	CK093004	CK093004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.193.1.A1_at	R	R	CK087348	CK087348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.1937.1.A1_at	R	R	CK093324	CK093324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.197.1.A1_at	R	R	CK087377	CK087377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2001.1.S1_at	R	R	CV277245	CV277245	NA	NA	NA	NA	AT4G34700.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os06g50000.1	"LYR motif containing protein, putative, expressed"	Medtr3g163080.1	Complex 1 LYR protein 	NA	NA	NA
Ptp.207.1.A1_at	R	R	CK087456	CK087456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.209.1.S1_at	R	R	CK087469	CK087469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2095.2.S1_at	R	R	BP933074	BP933074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2110.2.A1_at	R	R	CV255748	CV255748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2118.2.A1_at	R	R	BP930198	BP930198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2157.2.S1_at	R	R	BP930564	BP930564	NA	NA	Q3E7T8	Polyubiquitin 14	AT4G05050.4	ubiquitin 11 	LOC_Os04g53620.4	"ubiquitin family protein, putative, expressed"	Medtr8g021190.2	Ubiquitin 	NA	NA	NA
Ptp.2179.3.A1_at	R	R	CV274165	CV274165	NA	NA	P62201	Calmodulin	AT3G43810.1	calmodulin 7 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	NA	NA	NA
Ptp.219.2.S1_at	R	R	CV131927	CV131927	NA	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	NA	NA	NA
Ptp.2215.2.A1_at	R	R	CK089837	CK089837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2219.3.A1_at	R	R	CK090060	CK090060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2250.1.S1_at	R	R	CK090010	CK090010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2260.2.A1_at	R	R	CK096602	CK096602	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g103390.1	Nuclear protein SET 	NA	NA	NA
Ptp.2315.2.S1_s_at	R	R	CV131543	CV131543	NA	NA	NA	NA	AT2G15970.1	cold regulated 413 plasma membrane 1 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	NA	NA	NA
Ptp.2371.2.A1_at	R	R	CK092278	CK092278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2403.2.S1_at	R	R	CV262980	CV262980	NA	NA	NA	NA	AT4G16830.3	Hyaluronan / mRNA binding family 	LOC_Os01g41880.1	"hyaluronan/mRNA binding family domain containing protein, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	NA	NA	NA
Ptp.241.1.A1_at	R	R	CK087653	CK087653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.248.2.A1_at	R	R	BP930785	BP930785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2510.2.S1_at	R	R	CV273621	CV273621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2513.1.S1_at	R	R	CK093756	CK093756	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g120940.1	"esterase/lipase/thioesterase family protein, putative "	NA	NA	NA
Ptp.2601.2.S1_at	R	R	BU819882	BU819882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2632.1.S1_at	R	R	CK111660	CK111660	NA	NA	Q36632	Photosystem II reaction center protein H	ATCG00710.1	photosystem II reaction center protein H 	LOC_Os08g15296.1	"photosystem II reaction center protein H, putative, expressed"	Medtr2g080780.1	Photosystem II phosphoprotein PsbH 	NA	NA	NA
Ptp.2671.1.S1_at	R	R	CK092086	CK092086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.268.1.S1_at	R	R	CK087858	CK087858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2743.1.S1_at	R	R	CK109706	CK109706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2744.1.S1_s_at	R	R	DN500497	DN500497	scaffold_6:21725344-21725403(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2765.3.A1_at	R	R	CK089917	CK089917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2769.2.S1_at	R	R	DN499177	DN499177	NA	NA	NA	NA	AT4G19003.1	E2F/DP family winged-helix DNA-binding domain 	NA	NA	NA	NA	NA	NA	NA
Ptp.2777.1.S1_s_at	R	R	BU865424	BU865424	scaffold_5:24631260-24631427(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2782.1.S1_at	R	R	DN497832	DN497832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2819.1.S1_at	R	R	DN485720	DN485720	NA	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g14050.2	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.2	Protein kinase 	NA	NA	NA
Ptp.2835.2.A1_at	R	R	DN485399	DN485399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2837.1.A1_at	R	R	DN485500	DN485500	NA	NA	O74538	60S ribosomal protein L27-B	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2839.3.A1_at	R	R	DN485441	DN485441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2849.2.A1_at	R	R	DN484673	DN484673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2914.1.S1_at	R	R	BU862173	BU862173	NA	NA	O49741	GATA transcription factor 2	AT2G45050.1	GATA transcription factor 2 	LOC_Os01g54210.1	"GATA zinc finger domain containing protein, expressed"	Medtr8g015430.1	"Zinc finger, GATA-type "	NA	NA	NA
Ptp.2936.1.S1_s_at	R	R	BU836379	BU836379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2941.1.S1_at	R	R	BU831443	BU831443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2963.1.A1_at	R	R	DN488586	DN488586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.2964.1.A1_at	R	R	DN489175	DN489175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3002.1.S1_at	R	R	BU815103	BU815103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3010.1.A1_at	R	R	DN485961	DN485961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3019.1.A1_at	R	R	DN485673	DN485673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3023.1.S1_at	R	R	DN485607	DN485607	NA	NA	Q75AP7	60S ribosomal protein L2	AT2G18020.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr5g021750.1	Elongation factor P-like protein YeiP 	NA	NA	NA
Ptp.3026.1.S1_at	R	R	BU813030	BU813030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3029.2.S1_at	R	R	DN484864	DN484864	NA	NA	NA	NA	AT5G62270.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1). 	LOC_Os01g58750.1	expressed protein	Medtr4g089720.1	hypothetical protein 	NA	NA	NA
Ptp.3040.1.A1_at	R	R	CA929489	CA929489	NA	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G61890.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr2g103970.1	Multi antimicrobial extrusion protein MatE 	NA	NA	NA
Ptp.3042.1.A1_at	R	R	DN490460	DN490460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3050.2.A1_at	R	R	CK092654	CK092654	NA	NA	Q8LC45	Probable xyloglucan endotransglucosylase/hydrolase protein 33	AT1G10550.1	xyloglucan:xyloglucosyl transferase 33 	NA	NA	NA	NA	NA	NA	NA
Ptp.3063.1.S1_s_at	R	R	AJ774412	AJ774412	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g006510.1	hypothetical protein 	NA	NA	NA
Ptp.3070.2.A1_at	R	R	CK093252	CK093252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3101.1.S1_at	R	R	CK092176	CK092176	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3125.2.S1_at	R	R	AI162625	AI162625	NA	NA	P34913	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	NA	NA	NA
Ptp.3131.1.S1_at	R	R	DN489233	DN489233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3137.1.A1_at	R	R	DN485984	DN485984	NA	NA	Q4P7G1	Eukaryotic translation initiation factor 3 subunit G	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3149.1.S1_at	R	R	BU815436	BU815436	NA	NA	P0CG63	Polyubiquitin	AT5G20620.1	ubiquitin 4 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr4g110760.1	Ubiquitin 	NA	NA	NA
Ptp.3173.1.S1_at	R	R	BU885609	BU885609	NA	NA	NA	NA	AT5G64830.1	programmed cell death 2 C-terminal domain-containing protein 	LOC_Os04g54820.1	"programmed cell death 2 C-terminal domain-containing protein, putative, expressed"	Medtr3g144680.1	"Programmed cell death protein 2, C-terminal "	NA	NA	NA
Ptp.3174.1.S1_at	R	R	CK110592	CK110592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3198.1.S1_at	R	R	CK110034	CK110034	NA	NA	Q6FRC6	Nuclear transport factor 2	AT1G27970.1	nuclear transport factor 2B 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	NA	NA	NA
Ptp.3224.1.S1_at	R	R	DN495665	DN495665	NA	NA	O74893	40S ribosomal protein S20	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os10g08930.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	NA	NA	NA
Ptp.3240.1.S1_at	R	R	DN495564	DN495564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3243.1.S1_at	R	R	BU815936	BU815936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3248.1.S1_at	R	R	BU815581	BU815581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3251.1.S1_at	R	R	BU815406	BU815406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3257.1.S1_at	R	R	BU815183	BU815183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3264.1.S1_at	R	R	BU814898	BU814898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3265.1.S1_at	R	R	DN485794	DN485794	NA	NA	P0C951	Small COPII coat GTPase SAR1	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g23620.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	NA	NA	NA
Ptp.3272.1.S1_at	R	R	BU814638	BU814638	scaffold_16:14106164-14106542(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3290.1.S1_at	R	R	BU835954	BU835954	scaffold_7:6179125-6179902(-) (10)	NA	NA	NA	AT5G08200.1	peptidoglycan-binding LysM domain-containing protein 	NA	NA	NA	NA	NA	NA	NA
Ptp.3301.1.S1_at	R	R	DN485494	DN485494	NA	NA	O94754	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	NA	NA	NA
Ptp.3306.1.S1_at	R	R	BU813209	BU813209	NA	NA	P79057	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	NA	NA	NA
Ptp.3312.1.S1_at	R	R	BU812841	BU812841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3321.1.S1_at	R	R	DN486078	DN486078	NA	NA	P22129	Ras-related protein Rab-11B	AT4G18430.1	RAB GTPase homolog A1E 	LOC_Os06g35814.1	"ras-related protein, putative, expressed"	Medtr4g109180.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	NA	NA	NA
Ptp.3325.2.S1_at	R	R	CV263560	CV263560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3344.1.S1_at	R	R	BU815579	BU815579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3357.1.S1_at	R	R	DN485812	DN485812	NA	NA	Q9UWE4	60S ribosomal protein L44	AT4G14320.1	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	NA	NA	NA
Ptp.3359.2.A1_at	R	R	DN493194	DN493194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3395.1.A1_at	R	R	DN485487	DN485487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3407.1.S1_at	R	R	CK114637	CK114637	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g006510.1	hypothetical protein 	NA	NA	NA
Ptp.3418.1.S1_at	R	R	DN493248	DN493248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3507.2.S1_at	R	R	DN492469	DN492469	NA	NA	NA	NA	AT1G09970.2	Leucine-rich receptor-like protein kinase family protein 	NA	NA	Medtr2g010510.1	Protein kinase 	NA	NA	NA
Ptp.3518.1.A1_at	R	R	DN492409	DN492409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3553.1.S1_at	R	R	DN493158	DN493158	NA	NA	Q9SZ67	Probable WRKY transcription factor 19	AT5G64550.1	loricrin-related 	LOC_Os02g36595.1	expressed protein	NA	NA	NA	NA	NA
Ptp.3554.1.S1_at	R	R	CV277406	CV277406	NA	NA	Q93ZR6	O-acyltransferase WSD1	AT5G53390.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os01g48874.1	"wax synthase, putative, expressed"	AC151525_17.1	Protein of unknown function DUF1298 AC151525.18 75832-72871 F EGN_Mt090430 200	NA	NA	NA
Ptp.3557.1.S1_at	R	R	BU827074	BU827074	NA	NA	NA	NA	AT1G67680.1	SRP72 RNA-binding domain 	LOC_Os01g66560.1	"signal recognition particle 72 kDa protein, putative, expressed"	NA	NA	NA	NA	NA
Ptp.3562.1.S1_at	R	R	CK111885	CK111885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3574.1.S1_at	R	R	BU897070	BU897070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3599.1.S1_at	R	R	DN502837	DN502837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3671.1.S1_at	R	R	CK112025	CK112025	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g083010.1	hypothetical protein 	NA	NA	NA
Ptp.3677.2.S1_at	R	R	CA820849	CA820849	NA	NA	A4GYN8	"30S ribosomal protein S12-B, chloroplastic"	ATCG00905.1	ribosomal protein S12C 	LOC_Os10g21374.1	"chloroplast 30S ribosomal protein S12, putative"	Medtr3g043690.1	"Ribosomal protein S12, bacterial and chloroplast form "	NA	NA	NA
Ptp.3678.1.S1_at	R	R	CV228737	CV228737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3684.1.A1_s_at	R	R	CV267765	CV267765	scaffold_1:12437002-12437508(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3688.1.S1_at	R	R	DN491504	DN491504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3692.1.S1_at	R	R	DN491472	DN491472	scaffold_2:23125691-23125980(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3696.1.S1_at	R	R	CK113252	CK113252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3714.3.S1_at	R	R	CK093162	CK093162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3717.2.S1_at	R	R	BU886642	BU886642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3733.1.S1_at	R	R	DN488444	DN488444	NA	NA	NA	NA	AT4G09510.2	cytosolic invertase 2 	LOC_Os11g07440.4	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	NA	NA	NA
Ptp.3738.1.S1_at	R	R	BU832322	BU832322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3759.1.S1_at	R	R	CV260511	CV260511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3773.1.S1_at	R	R	DN488787	DN488787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3862.1.A1_at	R	R	DN487858	DN487858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.388.1.S1_at	R	R	CK088756	CK088756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3904.1.S1_at	R	R	BU866231	BU866231	scaffold_2:3131117-3131568(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3907.1.S1_at	R	R	BU866164	BU866164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3929.1.S1_at	R	R	BU864386	BU864386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3931.2.A1_at	R	R	DN488820	DN488820	NA	NA	NA	NA	AT1G49040.1	stomatal cytokinesis defective / SCD1 protein (SCD1) 	LOC_Os01g39380.1	"SCD1, putative, expressed"	NA	NA	NA	NA	NA
Ptp.3931.3.A1_at	R	R	CV261259	CV261259	NA	NA	NA	NA	AT1G49040.1	stomatal cytokinesis defective / SCD1 protein (SCD1) 	LOC_Os01g39380.1	"SCD1, putative, expressed"	NA	NA	NA	NA	NA
Ptp.3946.1.S1_at	R	R	BU863167	BU863167	scaffold_18:2376014-2376361(-) (10)	NA	NA	NA	AT4G31830.1	unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g04100.1	expressed protein	Medtr1g016880.1	hypothetical protein 	NA	NA	NA
Ptp.3955.1.S1_at	R	R	BU862004	BU862004	scaffold_11:2025511-2025591(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3956.1.S1_at	R	R	BU861989	BU861989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3964.1.S1_at	R	R	DN488506	DN488506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.3981.2.A1_at	R	R	CK089692	CK089692	NA	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29340.1	NAD-dependent epimerase/dehydratase family protein 	NA	NA	NA	NA	NA	NA	NA
Ptp.3991.1.S1_at	R	R	DN488960	DN488960	NA	NA	Q9C0Y8	UPF0613 protein PB24D3.06c	AT5G19050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g11060.1	expressed protein	NA	NA	NA	NA	NA
Ptp.4006.1.S1_at	R	R	CV277337	CV277337	NA	NA	Q3UX61	"N-alpha-acetyltransferase 11, NatA catalytic subunit"	AT5G13780.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os04g54330.3	"acetyltransferase, GNAT family, putative, expressed"	Medtr3g040890.1	GCN5-related N-acetyltransferase 	NA	NA	NA
Ptp.4019.1.S1_at	R	R	DN498407	DN498407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4024.3.S1_at	R	R	CK094538	CK094538	NA	NA	NA	NA	AT4G14680.1	Pseudouridine synthase/archaeosine transglycosylase-like family protein 	NA	NA	NA	NA	NA	NA	NA
Ptp.4025.1.S1_at	R	R	DN498311	DN498311	scaffold_13:4145151-4145479(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4035.1.S1_at	R	R	BU833152	BU833152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4037.1.S1_at	R	R	DN498209	DN498209	scaffold_3:15887472-15887604(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4038.1.S1_at	R	R	DN498198	DN498198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4050.12.A1_at	R	R	CV277051	CV277051	NA	NA	Q96386	Metallothionein-like protein type 3	AT3G15353.1	metallothionein 3 	NA	NA	Medtr8g070820.1	"Plant metallothionein, family 15 "	NA	NA	NA
Ptp.4052.2.A1_at	R	R	CV258257	CV258257	NA	NA	P06215	Endochitinase	AT3G12500.1	basic chitinase 	LOC_Os06g51060.1	"CHIT8 - Chitinase family protein precursor, expressed"	Medtr3g163970.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	NA	NA	NA
Ptp.4072.2.A1_at	R	R	DN486114	DN486114	NA	NA	O80443	GDSL esterase/lipase At2g38180	AT2G38180.1	SGNH hydrolase-type esterase superfamily protein 	NA	NA	Medtr3g166250.1	"Lipolytic enzyme, G-D-S-L; "	NA	NA	NA
Ptp.4086.2.S1_at	R	R	DN500174	DN500174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4129.1.S1_at	R	R	BU835592	BU835592	scaffold_14:5592405-5592601(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4169.1.S1_s_at	R	R	CV258347	CV258347	NA	NA	Q9FTZ2	"Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase"	AT1G20050.1	"C-8,7 sterol isomerase "	LOC_Os01g01369.1	"3-beta-hydroxysteroid-Delta-isomerase, putative, expressed"	NA	NA	NA	NA	NA
Ptp.4189.1.S1_at	R	R	DN498856	DN498856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4189.2.A1_at	R	R	DN489110	DN489110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4208.1.S1_at	R	R	BU826847	BU826847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4260.1.S1_at	R	R	BU836158	BU836158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4277.1.S1_at	R	R	BU835183	BU835183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4293.1.S1_at	R	R	DN499389	DN499389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4299.1.S1_at	R	R	DN499316	DN499316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4313.1.S1_at	R	R	DN499153	DN499153	scaffold_15:9191324-9191598(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4413.2.S1_at	R	R	CK097931	CK097931	NA	NA	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	NA	NA
Ptp.4437.2.A1_at	R	R	CK092061	CK092061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4445.2.S1_at	R	R	DN484898	DN484898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4448.2.A1_at	R	R	CK093059	CK093059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4483.1.S1_at	R	R	BU828646	BU828646	NA	NA	P52780	Glutaminyl-tRNA synthetase	AT1G25350.2	"glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative "	LOC_Os05g08990.1	"glutaminyl-tRNA synthetase, putative, expressed"	Medtr1g140680.1	"Glutamyl-tRNA synthetase archae/euk cytosolic; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 2; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 1 "	NA	NA	NA
Ptp.4503.1.A1_at	R	R	DN484715	DN484715	NA	NA	Q5I047	Protein FAM173B	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4600.1.S1_at	R	R	CK111866	CK111866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4629.1.S1_at	R	R	CV269449	CV269449	NA	NA	Q9C5X3	SNARE-interacting protein KEULE	AT1G12360.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os02g25580.1	"Sec1 family transport protein, putative, expressed"	Medtr8g106730.1	Sec1-like protein 	NA	NA	NA
Ptp.4631.3.A1_at	R	R	CK093564	CK093564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4666.3.A1_at	R	R	CK092905	CK092905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4758.3.A1_at	R	R	CK092106	CK092106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.481.1.A1_at	R	R	CK087328	CK087328	NA	NA	Q02897	Glutelin type-B 2	AT1G07750.1	RmlC-like cupins superfamily protein 	LOC_Os05g02520.1	"cupin domain containing protein, expressed"	Medtr4g137470.1	Cupin 	NA	NA	NA
Ptp.4838.1.S1_at	R	R	DN500830	DN500830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4858.1.S1_at	R	R	DN500735	DN500735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4894.3.S1_at	R	R	CK095785	CK095785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.490.1.A1_at	R	R	CK087421	CK087421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4912.2.A1_at	R	R	DN490466	DN490466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4942.1.S1_at	R	R	BU811889	BU811889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4950.1.S1_at	R	R	BU811648	BU811648	scaffold_3:15916223-15916332(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.4975.1.S1_at	R	R	DN500659	DN500659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5011.2.S1_at	R	R	BU871538	BU871538	scaffold_4:22941920-22942053(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5022.1.S1_at	R	R	DN500433	DN500433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5054.1.S1_at	R	R	CK094521	CK094521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5064.1.S1_at	R	R	BI122347	BI122347	NA	NA	Q8LPB4	Phytosulfokine receptor 1	AT1G74190.1	receptor like protein 15 	LOC_Os04g55420.1	"leucine-rich repeat family protein, putative, expressed"	AC235756_17.1	"Leucine-rich repeat, typical subtype AC235756.1 127596-123999 E EGN_Mt090430 200"	NA	NA	NA
Ptp.5100.1.S1_at	R	R	BI124446	BI124446	NA	NA	O65012	Cytochrome P450 78A4	AT3G61880.2	cytochrome p450 78a9 	LOC_Os09g35940.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	NA	NA
Ptp.5159.2.S1_at	R	R	CK094656	CK094656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5161.2.S1_at	R	R	CV276091	CV276091	NA	NA	P33154	Pathogenesis-related protein 1	AT2G14610.1	pathogenesis-related gene 1 	NA	NA	Medtr2g010640.1	Allergen V5/Tpx-1 related 	NA	NA	NA
Ptp.520.1.A1_at	R	R	CK088248	CK088248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5234.2.A1_at	R	R	CK089618	CK089618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5263.1.S1_at	R	R	BU837219	BU837219	NA	NA	NA	NA	AT5G07950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g11450.1	expressed protein	NA	NA	NA	NA	NA
Ptp.5337.1.S1_a_at	R	R	BU891909	BU891909	NA	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr5g006700.1	Protein kinase 	NA	NA	NA
Ptp.5359.1.S1_at	R	R	BU884560	BU884560	NA	NA	P00412	Cytochrome c oxidase subunit 2	ATMG00160.1	cytochrome oxidase 2 	NA	NA	Medtr1g006010.1	Copper center Cu(A); 	NA	NA	NA
Ptp.54.1.S1_at	R	R	CK088200	CK088200	NA	NA	Q5RDI2	Heat shock factor-binding protein 1	AT4G15802.1	heat shock factor binding protein 	LOC_Os09g20830.2	"heat shock factor-binding protein 1, putative, expressed"	Medtr7g130390.1	Heat shock factor binding 1 	NA	NA	NA
Ptp.5455.1.S1_at	R	R	BU829455	BU829455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5511.2.A1_at	R	R	CK088605	CK088605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5534.2.S1_at	R	R	CF231422	CF231422	NA	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os01g60410.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
Ptp.5559.1.S1_at	R	R	BU896531	BU896531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.557.1.A1_at	R	R	CK088721	CK088721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.560.1.A1_at	R	R	CK088723	CK088723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.563.1.A1_at	R	R	CK088789	CK088789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5632.2.S1_at	R	R	CV255417	CV255417	NA	NA	P05167	Thiol protease aleurain	AT5G60360.1	aleurain-like protease 	LOC_Os09g27030.2	"oryzain gamma chain precursor, putative, expressed"	NA	NA	NA	NA	NA
Ptp.568.1.A1_at	R	R	CK088893	CK088893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5747.2.A1_at	R	R	CV274965	CV274965	NA	NA	Q9SS17	40S ribosomal protein S24-1	AT3G04920.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	NA	NA	NA
Ptp.58.1.S1_at	R	R	CK088247	CK088247	scaffold_10:10326110-10326368(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.5850.2.A1_at	R	R	CV253282	CV253282	NA	NA	P49211	60S ribosomal protein L32-1	AT4G18100.1	Ribosomal protein L32e 	LOC_Os09g32532.2	"60S ribosomal protein L32, putative, expressed"	Medtr4g134080.1	Ribosomal protein L32e 	NA	NA	NA
Ptp.5892.3.S1_at	R	R	AI162226	AI162226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.598.1.A1_at	R	R	CV281520	CV281520	NA	NA	NA	NA	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g43380.1	"TBC domain containing protein, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	NA	NA	NA
Ptp.5981.3.A1_at	R	R	CK090293	CK090293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6006.1.S1_at	R	R	BU866786	BU866786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6033.1.S1_at	R	R	CK104787	CK104787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6079.2.A1_at	R	R	CK094662	CK094662	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6088.1.S1_at	R	R	BU885138	BU885138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6114.1.S1_at	R	R	CK095090	CK095090	NA	NA	O93931	40S ribosomal protein S26	AT3G56340.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.2	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	NA	NA	NA
Ptp.6164.1.S1_at	R	R	DN490754	DN490754	NA	NA	O14121	"Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial"	AT1G07180.1	alternative  NAD(P)H dehydrogenase 1 	LOC_Os07g37730.1	"NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed"	Medtr4g125430.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	NA	NA	NA
Ptp.6194.1.S1_at	R	R	CV237837	CV237837	NA	NA	Q9SUS3	Beta-adaptin-like protein B	AT4G11380.2	Adaptin family protein 	LOC_Os03g23950.1	"adapitin protein, putative, expressed"	Medtr4g103980.1	"Adaptin, N-terminal; Alpha/gamma adaptin, C-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; "	NA	NA	NA
Ptp.6235.1.S1_at	R	R	CK104555	CK104555	NA	NA	NA	NA	AT5G42390.1	Insulinase (Peptidase family M16) family protein 	LOC_Os06g41990.2	"M16 domain containing zinc peptidase, putative, expressed"	Medtr5g007490.1	"Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	NA	NA	NA
Ptp.6266.1.S1_at	R	R	DN499531	DN499531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.631.1.S1_at	R	R	CK088725	CK088725	NA	NA	Q9VUV9	Putative U5 small nuclear ribonucleoprotein 200 kDa helicase	AT5G61140.2	U5 small nuclear ribonucleoprotein helicase 	LOC_Os03g11470.1	"DEAD/DEAH box helicase domain containing protein, expressed"	Medtr3g037050.1	Sec63 	NA	NA	NA
Ptp.6395.2.A1_at	R	R	CK092383	CK092383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6440.2.A1_at	R	R	CK093056	CK093056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6444.2.A1_at	R	R	CK093792	CK093792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6448.2.S1_at	R	R	CK093215	CK093215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.645.2.S1_at	R	R	CV279246	CV279246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6478.2.A1_at	R	R	CK093738	CK093738	NA	NA	Q8H7F6	"Monothiol glutaredoxin-S16, chloroplastic"	AT2G38270.1	CAX-interacting protein 2 	LOC_Os12g07650.1	"OsGrx_S16 - glutaredoxin subgroup II, expressed"	AC233100_71.1	Glutaredoxin-related protein; Thioredoxin-like fold AC233100.6 316188-320499 F EGN_Mt090430 200	NA	NA	NA
Ptp.6496.1.A1_at	R	R	CV263678	CV263678	NA	NA	NA	NA	AT1G72960.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os01g39310.1	"SEY1, putative, expressed"	NA	NA	NA	NA	NA
Ptp.6551.2.A1_at	R	R	CK093481	CK093481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6562.1.S1_at	R	R	CK093623	CK093623	NA	NA	Q3YJS9	Patatin-3-Kuras 1	AT2G26560.1	phospholipase A 2A 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr3g148130.1	Patatin 	NA	NA	NA
Ptp.657.2.A1_at	R	R	CV267167	CV267167	NA	NA	P27608	"Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic"	AT4G39980.1	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 	LOC_Os08g37790.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr2g009150.1	"DAHP synthetase, class II "	NA	NA	NA
Ptp.6591.1.S1_at	R	R	DN500226	DN500226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6602.2.S1_at	R	R	CV257410	CV257410	NA	NA	P46270	Cytochrome b-c1 complex subunit 9	AT3G52730.1	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein 	LOC_Os07g46160.1	"MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	NA	NA
Ptp.6671.2.S1_at	R	R	DN494267	DN494267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6773.1.S1_at	R	R	CV131973	CV131973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6777.1.S1_at	R	R	CV253975	CV253975	NA	NA	Q9SS17	40S ribosomal protein S24-1	AT3G04920.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	NA	NA	NA
Ptp.6827.2.S1_at	R	R	CV273429	CV273429	NA	NA	Q06450	"ATP synthase subunit epsilon, mitochondrial"	AT1G51650.1	"ATP synthase epsilon chain, mitochondrial "	LOC_Os08g15170.1	"ATP synthase epsilon chain, mitochondrial, putative, expressed"	Medtr5g043990.1	Mitochondrial ATP synthase epsilon chain 	NA	NA	NA
Ptp.6854.1.A1_a_at	R	R	DN489339	DN489339	NA	NA	NA	NA	NA	NA	NA	NA	Medtr8g105890.1	hypothetical protein 	NA	NA	NA
Ptp.6866.1.S1_at	R	R	BU834391	BU834391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6874.1.S1_at	R	R	DN499575	DN499575	NA	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os02g57480.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	NA	NA	NA
Ptp.688.1.A1_at	R	R	CK087633	CK087633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6933.1.S1_at	R	R	DN495918	DN495918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6937.1.S1_at	R	R	DN498254	DN498254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6938.1.S1_a_at	R	R	DN488574	DN488574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6949.1.A1_at	R	R	DN488709	DN488709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6954.2.A1_at	R	R	CV265845	CV265845	NA	NA	Q9SIM4	60S ribosomal protein L14-1	AT2G20450.1	Ribosomal protein L14 	LOC_Os04g43540.1	"ribosomal protein L14, putative, expressed"	Medtr8g138420.1	Ribosomal protein L14 	NA	NA	NA
Ptp.6961.1.S1_at	R	R	BU866539	BU866539	scaffold_19:5792361-5792394(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6963.1.A1_s_at	R	R	DN488824	DN488824	scaffold_18:1000244-1000488(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.6987.1.S1_at	R	R	DN489050	DN489050	NA	NA	NA	NA	AT1G32370.4	tobamovirus multiplication 2B 	LOC_Os02g17850.1	"TOM2B, putative, expressed"	Medtr2g082950.1	"TOM2B, putative "	NA	NA	NA
Ptp.7000.2.A1_at	R	R	CK091939	CK091939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.702.2.S1_at	R	R	CK105751	CK105751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7030.1.S1_at	R	R	DN488639	DN488639	NA	NA	Q9C7F7	Uncharacterized GPI-anchored protein At1g27950	AT2G44300.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g09970.1	"LTPL84 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g105470.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	NA	NA	NA
Ptp.7033.1.S1_at	R	R	BU865388	BU865388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7042.1.S1_at	R	R	DN498814	DN498814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7070.1.S1_at	R	R	DN488044	DN488044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7099.2.S1_at	R	R	CA824030	CA824030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7132.2.S1_at	R	R	DN494473	DN494473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7141.3.A1_at	R	R	CV275526	CV275526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.716.1.A1_at	R	R	CK088028	CK088028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7199.3.A1_at	R	R	DN490409	DN490409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7207.1.S1_at	R	R	DN502358	DN502358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7232.1.S1_at	R	R	DN492685	DN492685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7266.1.S1_at	R	R	DN493186	DN493186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7303.1.S1_at	R	R	DN492705	DN492705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7361.1.S1_at	R	R	BU893273	BU893273	NA	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022110.1	"Heat shock protein DnaJ, N-terminal "	NA	NA	NA
Ptp.7392.1.S1_at	R	R	BU815619	BU815619	NA	NA	Q9P844	40S ribosomal protein S21	AT3G53890.2	Ribosomal protein S21e  	LOC_Os03g46490.1	"40S ribosomal protein S21, putative, expressed"	Medtr7g084190.1	Ribosomal protein S21e 	NA	NA	NA
Ptp.7406.1.S1_at	R	R	DN486073	DN486073	NA	NA	P62909	40S ribosomal protein S3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os07g41750.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	NA	NA	NA
Ptp.7425.1.S1_at	R	R	DN493174	DN493174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7425.1.S1_s_at	R	R	DN493174	DN493174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7428.1.S1_at	R	R	DN495038	DN495038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7481.1.S1_at	R	R	DN485634	DN485634	NA	NA	P25443	40S ribosomal protein S2	AT2G41840.1	Ribosomal protein S5 family protein 	LOC_Os03g59310.1	"ribosomal protein, putative, expressed"	Medtr4g157070.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	NA	NA	NA
Ptp.7508.1.S1_at	R	R	CK109400	CK109400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7556.2.A1_at	R	R	DN490434	DN490434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.756.1.A1_at	R	R	CK088737	CK088737	NA	NA	NA	NA	AT1G55280.1	"Lipase/lipooxygenase, PLAT/LH2 family protein "	LOC_Os11g29900.2	expressed protein	Medtr4g133970.1	hypothetical protein 	NA	NA	NA
Ptp.7605.1.S1_at	R	R	DN485463	DN485463	NA	NA	Q9RPT1	Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase	AT1G07440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g08600.1	"versicolorin reductase, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
Ptp.7610.1.S1_at	R	R	BU813846	BU813846	NA	NA	Q4P0K3	13 kDa ribonucleoprotein-associated protein	AT5G20160.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os03g13800.1	"ribosomal protein L7Ae, putative, expressed"	Medtr8g119890.1	Ribosomal protein L7AE 	NA	NA	NA
Ptp.7614.1.S1_at	R	R	DN495492	DN495492	NA	NA	P55034	26S proteasome non-ATPase regulatory subunit 4	AT4G38630.1	regulatory particle non-ATPase 10 	LOC_Os03g13970.2	"26S proteasome non-ATPase regulatory subunit 4, putative, expressed"	Medtr5g022350.1	"von Willebrand factor, type A; Ubiquitin interacting motif "	NA	NA	NA
Ptp.7640.1.S1_at	R	R	DN497826	DN497826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7649.1.S1_at	R	R	BI125474	BI125474	NA	NA	P93257	Probable mannitol dehydrogenase	AT4G37980.1	elicitor-activated gene 3-1 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032820.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	NA	NA	NA
Ptp.7650.2.A1_at	R	R	DN488603	DN488603	NA	NA	Q9ZV51	RING-H2 finger protein ATL56	AT2G18670.1	RING/U-box superfamily protein 	LOC_Os08g43670.1	"RING-H2 finger protein ATL2B, putative, expressed"	Medtr8g127780.1	"Zinc finger, RING-type "	NA	NA	NA
Ptp.7655.1.S1_at	R	R	DN498405	DN498405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7659.1.S1_at	R	R	DN488737	DN488737	NA	NA	Q9CRC8	Leucine-rich repeat-containing protein 40	AT3G15410.2	Leucine-rich repeat (LRR) family protein 	LOC_Os02g58030.1	"leucine-rich repeat-containing protein 40, putative, expressed"	NA	NA	NA	NA	NA
Ptp.7669.1.S1_at	R	R	DN498577	DN498577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.767.1.A1_at	R	R	CK088958	CK088958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7670.1.S1_at	R	R	DN498580	DN498580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7676.1.S1_at	R	R	DN488998	DN488998	NA	NA	Q43804	Oleosin 1	AT4G25140.1	oleosin 1 	LOC_Os04g46200.1	"oleosin, putative, expressed"	Medtr1g111990.1	Oleosin 	NA	NA	NA
Ptp.7680.1.S1_a_at	R	R	DN498857	DN498857	NA	NA	Q5NCR9	Coiled-coil domain-containing protein 55	AT2G27285.1	Coiled-coil domain-containing protein 55 (DUF2040) 	LOC_Os04g35910.1	"coiled-coil domain-containing protein 55, putative, expressed"	Medtr5g102580.1	"Coiled-coil domain-containing protein 55, related "	NA	NA	NA
Ptp.7686.1.S1_at	R	R	DN498255	DN498255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7702.1.S1_at	R	R	BU863185	BU863185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7716.1.S1_at	R	R	DN498738	DN498738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7717.1.S1_at	R	R	DN498769	DN498769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7733.2.S1_at	R	R	CV260345	CV260345	NA	NA	Q9S7A3	Molybdopterin synthase sulfur carrier subunit	AT4G10100.3	"co-factor for nitrate, reductase and xanthine dehydrogenase 7 "	LOC_Os02g35200.1	"VP15, putative, expressed"	Medtr3g009960.1	ThiamineS; 2Fe-2S Ferredoxin-like fold 	NA	NA	NA
Ptp.7783.1.S1_at	R	R	DN499174	DN499174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7808.1.S1_at	R	R	DN489590	DN489590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7874.1.S1_at	R	R	DN500631	DN500631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7887.1.S1_at	R	R	CV254850	CV254850	NA	NA	Q54FB7	Xanthine dehydrogenase	AT4G34890.1	xanthine dehydrogenase 1 	LOC_Os03g31550.2	"aldehyde oxidase, putative, expressed"	Medtr2g117560.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	NA	NA	NA
Ptp.7888.1.S1_at	R	R	DN500883	DN500883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7893.1.S1_at	R	R	DN500727	DN500727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7898.1.S1_at	R	R	BU811912	BU811912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7900.1.S1_at	R	R	DN500858	DN500858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7909.1.A1_at	R	R	CV261088	CV261088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.7992.1.S1_at	R	R	DN503173	DN503173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8003.1.S1_at	R	R	DN503189	DN503189	scaffold_10:15831049-15831299(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8006.1.S1_at	R	R	BU831728	BU831728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8028.1.A1_at	R	R	DN485721	DN485721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8028.2.A1_at	R	R	DN485729	DN485729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8058.1.S1_at	R	R	DN488958	DN488958	NA	NA	NA	NA	AT5G65540.1	unknown protein; Has 6825 Blast hits to 3811 proteins in 289 species: Archae - 0; Bacteria - 184; Metazoa - 2139; Fungi - 760; Plants - 816; Viruses - 52; Other Eukaryotes - 2874 (source: NCBI BLink). 	NA	NA	Medtr5g033120.1	hypothetical protein 	NA	NA	NA
Ptp.8061.2.A1_a_at	R	R	CV273556	CV273556	scaffold_4:15909155-15909514(-) (10)	NA	Q9XIL5	Pentatricopeptide repeat-containing protein At2g15820	AT2G15820.1	endonucleases 	LOC_Os02g47360.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g032010.1	LAGLIDADG DNA endonuclease 	NA	NA	NA
Ptp.8081.1.S1_at	R	R	DN489583	DN489583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8093.2.A1_at	R	R	CV260421	CV260421	scaffold_14:8900186-8900403(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8098.1.S1_at	R	R	DN491505	DN491505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.810.1.S1_at	R	R	CK089511	CK089511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8108.1.S1_at	R	R	DN502710	DN502710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8109.1.S1_at	R	R	DN492700	DN492700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8118.1.S1_a_at	R	R	DN492710	DN492710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8118.1.S1_at	R	R	DN492710	DN492710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.8137.2.A1_at	R	R	DN503633	DN503633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.872.2.S1_at	R	R	CA924312	CA924312	NA	NA	Q9ZUC1	"Quinone oxidoreductase-like protein At1g23740, chloroplastic"	AT1G23740.1	"Oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os08g29170.1	"dehydrogenase, putative, expressed"	Medtr6g012770.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	NA	NA	NA
Ptp.922.1.A1_at	R	R	CK089483	CK089483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.941.2.A1_at	R	R	CV283739	CV283739	NA	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	NA	NA	NA
Ptp.947.1.A1_at	R	R	CK089644	CK089644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.991.1.A1_at	R	R	CK089921	CK089921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ptp.998.1.A1_at	R	R	CK089978	CK089978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.100056.1.A1_at	R	R	BP932830	BP932830	scaffold_10:18878087-18878174(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.100075.1.A1_at	R	R	BP932200	BP932200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.100093.1.A1_at	R	R	BP931712	BP931712	NA	NA	P10330	NADH-ubiquinone oxidoreductase chain 5	ATMG00665.1	NADH dehydrogenase 5B 	LOC_Os10g21418.1	"NADPH-dependent oxidoreductase, putative"	Medtr1g007860.1	"NADH-ubiquinone oxidoreductase, chain 5 "	NA	NA	NA
PtpAffx.100116.1.A1_at	R	R	BP930779	BP930779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.100290.1.S1_at	R	R	AJ772046	AJ772046	scaffold_1:32064110-32064267(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10044.1.A1_at	R	R	BP934020	BP934020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10068.1.A1_at	R	R	BP931786	BP931786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.100723.1.S1_at	R	R	CV272081	CV272081	NA	NA	P15688	NADH-ubiquinone oxidoreductase chain 2	ATMG01330.1	hypothetical protein 	LOC_Os01g57990.1	hypothetical protein	Medtr1g007140.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.101029.1.A1_at	R	R	CV282555	CV282555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101124.1.A1_at	R	R	CV277518	CV277518	NA	NA	P41090	"Naringenin,2-oxoglutarate 3-dioxygenase"	AT3G51240.2	flavanone 3-hydroxylase 	LOC_Os04g56700.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr8g089960.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.101165.1.A1_at	R	R	CV275334	CV275334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101168.1.A1_at	R	R	CV275214	CV275214	NA	NA	Q54QG9	NEDD8-activating enzyme E1 catalytic subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101179.1.A1_at	R	R	CV274742	CV274742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101192.1.A1_at	R	R	CV274118	CV274118	NA	NA	P05754	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os02g28810.1	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	NA
PtpAffx.101199.1.A1_at	R	R	CV273886	CV273886	NA	NA	NA	NA	NA	NA	NA	NA	Medtr4g018920.1	hypothetical protein 	NA	NA	NA
PtpAffx.101217.1.A1_at	R	R	CV273063	CV273063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101234.1.A1_at	R	R	CV272465	CV272465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101445.1.S1_at	R	R	CV264873	CV264873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101506.1.A1_at	R	R	CV262328	CV262328	scaffold_1:15280247-15280995(+) (10)//scaffold_11:2447006-2447686(-) (10)//scaffold_172:4882-5562(-) (10)//scaffold_18:11987140-11987820(-) (10)//scaffold_4:611448-612128(+) (9)//scaffold_4:14498672-14499352(-) (10)	NA	NA	NA	NA	NA	LOC_Os06g38480.2	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	NA	NA	NA
PtpAffx.101528.1.A1_at	R	R	CV261588	CV261588	NA	NA	NA	NA	AT1G48300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	NA	NA	Medtr8g133810.1	Thioredoxin fold 	NA	NA	NA
PtpAffx.101545.1.A1_at	R	R	CV260857	CV260857	scaffold_17:10763796-10763998(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101567.1.A1_at	R	R	CV260072	CV260072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101608.1.A1_at	R	R	CV258068	CV258068	scaffold_2:11170065-11170619(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101660.1.A1_at	R	R	CV256152	CV256152	scaffold_11:4045145-4045527(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101678.1.A1_s_at	R	R	CV255619	CV255619	scaffold_6:6293624-6293815(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1017.1.A1_at	R	R	CV255424	CV255424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101730.1.A1_at	R	R	CV253655	CV253655	scaffold_18:497247-497673(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101746.1.A1_at	R	R	CV253173	CV253173	NA	NA	Q9M5L0	60S ribosomal protein L35	AT2G39390.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	NA	NA	NA
PtpAffx.101758.1.A1_at	R	R	CV252569	CV252569	NA	NA	Q2SFI7	Serine hydroxymethyltransferase 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101828.1.A1_at	R	R	CV249602	CV249602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101862.1.A1_at	R	R	CV248019	CV248019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101880.1.A1_at	R	R	CV246951	CV246951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.101954.3.A1_at	R	R	CV273994	CV273994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102057.1.A1_at	R	R	CV239688	CV239688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102061.1.A1_at	R	R	CV239588	CV239588	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102156.2.A1_a_at	R	R	CV244460	CV244460	scaffold_35:169468-169583(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102162.2.A1_at	R	R	DN487594	DN487594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102199.1.A1_at	R	R	CV233910	CV233910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.102643.1.S1_at	R	R	AJ775881	AJ775881	NA	NA	Q05085	Nitrate transporter 1.1	AT1G12110.1	nitrate transporter 1.1 	LOC_Os10g40600.1	"peptide transporter PTR2, putative, expressed"	Medtr5g012420.1	"TGF-beta receptor, type I/II extracellular region "	NA	NA	NA
PtpAffx.102954.1.A1_at	R	R	CK095860	CK095860	NA	NA	Q9C5J9	Uncharacterized GTP-binding protein At5g64813	AT5G64813.1	Ras-related small GTP-binding family protein 	LOC_Os10g04580.1	"ras-related protein, putative, expressed"	Medtr4g140980.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	NA	NA	NA
PtpAffx.103250.1.S1_at	R	R	CK114733	CK114733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103335.1.S1_at	R	R	CK110688	CK110688	NA	NA	A4GYT6	ATP-dependent Clp protease proteolytic subunit	ATCG00670.1	plastid-encoded CLP P 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103441.1.S1_at	R	R	CK096168	CK096168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103465.1.S1_at	R	R	CK105258	CK105258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103483.1.S1_at	R	R	CK104764	CK104764	NA	NA	Q4WI01	40S ribosomal protein S21	AT3G53890.2	Ribosomal protein S21e  	LOC_Os03g46490.1	"40S ribosomal protein S21, putative, expressed"	Medtr7g084190.1	Ribosomal protein S21e 	NA	NA	NA
PtpAffx.103494.1.S1_at	R	R	CK094184	CK094184	NA	NA	O60135	Long-chain-fatty-acid--CoA ligase 1	AT2G04350.2	AMP-dependent synthetase and ligase family protein 	LOC_Os11g35400.1	"AMP-binding enzyme, putative, expressed"	Medtr5g009400.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.103497.1.S1_at	R	R	CK104080	CK104080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103532.1.S1_at	R	R	BI128442	BI128442	NA	NA	Q8RXK2	Small RNA degrading nuclease 3	AT5G67240.2	small RNA degrading nuclease 3 	LOC_Os04g55700.1	"exonuclease, putative, expressed"	Medtr1g027950.1	"exonuclease ^, related "	NA	NA	NA
PtpAffx.103709.1.S1_at	R	R	CK095449	CK095449	NA	NA	O94363	GTP-binding protein rhb1	AT3G09910.3	RAB GTPase homolog C2B 	LOC_Os01g08450.1	"ras-related protein, putative, expressed"	Medtr3g143270.1	"Ras GTPase; Sigma-54 factor, interaction region; "	NA	NA	NA
PtpAffx.103712.1.A1_at	R	R	CK095331	CK095331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103716.1.A1_at	R	R	CK095184	CK095184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103721.1.A1_at	R	R	CK095041	CK095041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103727.1.A1_at	R	R	CK094790	CK094790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103736.1.A1_at	R	R	CK094615	CK094615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103781.1.A1_at	R	R	CK092140	CK092140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103813.1.A1_at	R	R	CK091005	CK091005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.103844.1.A1_at	R	R	CK088450	CK088450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1040.1.A1_at	R	R	CV253539	CV253539	NA	NA	O65082	60S ribosomal protein L15-2	AT4G16720.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	NA	NA	NA
PtpAffx.10405.5.S1_at	R	R	DN493379	DN493379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.104239.1.S1_at	R	R	CV273123	CV273123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1045.1.A1_at	R	R	CV253296	CV253296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.104519.1.S1_at	R	R	DN493045	DN493045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.104659.1.S1_at	R	R	DN486376	DN486376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.104842.1.S1_at	R	R	CN193270	CN193270	scaffold_16:13924812-13925293(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.105072.1.S1_at	R	R	DN494587	DN494587	scaffold_15:6327932-6328030(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.105254.1.S1_at	R	R	DN490273	DN490273	NA	NA	P14569	ATP synthase subunit a	ATMG00410.1	ATPase subunit 6-1 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.105288.1.S1_at	R	R	DN500142	DN500142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.105314.1.S1_at	R	R	BU822953	BU822953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.105351.1.S1_at	R	R	CK096648	CK096648	NA	NA	Q680Z7	"Pentatricopeptide repeat-containing protein At1g09220, mitochondrial"	AT1G09220.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g60000.1	"pentatricopeptide, putative, expressed"	Medtr4g024720.1	Pentatricopeptide repeat 	NA	NA	NA
PtpAffx.105397.1.S1_at	R	R	BU818934	BU818934	NA	NA	NA	NA	AT5G57000.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 141 Blast hits to 104 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os09g19910.1	expressed protein	Medtr8g021000.1	hypothetical protein 	NA	NA	NA
PtpAffx.105944.1.S1_at	R	R	AI165927	AI165927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106034.1.S1_at	R	R	DN500743	DN500743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106093.1.S1_at	R	R	CA821381	CA821381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106097.1.S1_at	R	R	DN497289	DN497289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106111.1.S1_at	R	R	DN496721	DN496721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106111.2.A1_at	R	R	DN487116	DN487116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106130.1.S1_at	R	R	DN496164	DN496164	NA	NA	NA	NA	NA	NA	LOC_Os05g38260.1	"retrotransposon protein, putative, unclassified"	Medtr3g026360.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.106134.1.S1_at	R	R	DN495981	DN495981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106134.2.S1_at	R	R	CA825991	CA825991	scaffold_12:11780774-11781036(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106138.1.S1_at	R	R	BU889364	BU889364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106198.1.S1_at	R	R	DN493437	DN493437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106199.1.A1_at	R	R	CK094702	CK094702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106217.1.A1_at	R	R	DN492361	DN492361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106229.1.A1_at	R	R	DN492075	DN492075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106234.1.A1_at	R	R	DN491855	DN491855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106249.1.A1_at	R	R	DN491280	DN491280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106283.1.S1_at	R	R	DN488956	DN488956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106300.1.A1_at	R	R	DN487850	DN487850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106306.1.A1_at	R	R	DN487660	DN487660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106312.1.A1_at	R	R	DN487543	DN487543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106329.1.A1_at	R	R	DN486877	DN486877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106333.1.A1_at	R	R	DN486688	DN486688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106341.1.A1_at	R	R	DN486544	DN486544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106360.1.A1_at	R	R	DN485908	DN485908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.106364.1.A1_at	R	R	DN485479	DN485479	NA	NA	P18869	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10720.2.S1_at	R	R	AJ773949	AJ773949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107245.1.S1_at	R	R	CX174812	CX174812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107269.1.A1_at	R	R	CX173583	CX173583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1074.1.A1_at	R	R	CV250485	CV250485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107443.1.A1_at	R	R	CV283461	CV283461	NA	NA	NA	NA	AT5G03880.1	Thioredoxin family protein 	LOC_Os08g44400.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr3g013180.1	Thioredoxin-like fold 	NA	NA	NA
PtpAffx.107444.2.S1_at	R	R	CV273637	CV273637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107477.1.A1_at	R	R	CV280612	CV280612	NA	NA	NA	NA	AT1G13560.1	aminoalcoholphosphotransferase 1 	LOC_Os02g02750.1	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr3g017160.1	CDP-alcohol phosphatidyltransferase 	NA	NA	NA
PtpAffx.107478.1.A1_at	R	R	CV280553	CV280553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107552.1.A1_at	R	R	CV276687	CV276687	NA	NA	NA	NA	AT2G43090.2	Aconitase/3-isopropylmalate dehydratase protein 	LOC_Os02g43830.2	"3-isopropylmalate dehydratase small subunit 2, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.107555.1.A1_at	R	R	CV276454	CV276454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107558.1.A1_at	R	R	CV276277	CV276277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107568.1.A1_at	R	R	CV275972	CV275972	NA	NA	Q01781	Adenosylhomocysteinase	AT4G13940.4	S-adenosyl-L-homocysteine hydrolase 	LOC_Os11g26850.3	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr4g133260.1	S-adenosyl-L-homocysteine hydrolase; 	NA	NA	NA
PtpAffx.107580.1.A1_at	R	R	CV275348	CV275348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107591.1.A1_at	R	R	CV274915	CV274915	NA	NA	P46293	40S ribosomal protein S16	AT3G04230.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g130210.1	Ribosomal protein S9 	NA	NA	NA
PtpAffx.107602.1.A1_at	R	R	CV274504	CV274504	NA	NA	P00873	"Ribulose bisphosphate carboxylase small chain 1, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g19470.2	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr8g129230.1	"Ribulose bisphosphate carboxylase, small chain "	NA	NA	NA
PtpAffx.107610.1.A1_at	R	R	CV274238	CV274238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107612.1.A1_at	R	R	CV274093	CV274093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107615.1.A1_at	R	R	CV273808	CV273808	NA	NA	Q54BM3	Mitochondrial substrate carrier family protein G	AT2G33820.1	Mitochondrial substrate carrier family protein 	LOC_Os10g42299.3	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	NA	NA	NA
PtpAffx.107618.1.A1_at	R	R	CV273672	CV273672	NA	NA	P49689	40S ribosomal protein S30	AT5G56670.1	Ribosomal protein S30 family protein 	LOC_Os06g07580.2	expressed protein	Medtr5g012690.1	Ribosomal protein S30 	NA	NA	NA
PtpAffx.107622.2.A1_at	R	R	CV273615	CV273615	NA	NA	Q9P4X3	Probable U3 small nucleolar RNA-associated protein 7	AT3G10530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g08770.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.107625.1.A1_at	R	R	CV273577	CV273577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107627.1.A1_at	R	R	CV273490	CV273490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107634.1.A1_at	R	R	CV273303	CV273303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107640.1.A1_at	R	R	CV272955	CV272955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107699.1.A1_at	R	R	CV270446	CV270446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107752.1.A1_at	R	R	CV268159	CV268159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107834.1.A1_at	R	R	CV260638	CV260638	scaffold_10:2689160-2689526(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107844.1.A1_at	R	R	CV264159	CV264159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107855.2.A1_at	R	R	CK092214	CK092214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107894.1.A1_at	R	R	BU889318	BU889318	NA	NA	NA	NA	AT3G48660.1	Protein of unknown function (DUF 3339) 	LOC_Os11g30360.1	expressed protein	Medtr3g104130.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	NA	NA	NA
PtpAffx.107909.1.A1_at	R	R	CV261378	CV261378	scaffold_5:6520300-6520614(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107953.1.A1_at	R	R	CV258999	CV258999	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.107969.1.A1_at	R	R	CV265199	CV265199	scaffold_9:9597232-9597773(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108007.1.A1_at	R	R	CV257379	CV257379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108009.1.A1_at	R	R	CV257306	CV257306	scaffold_1:40737258-40737575(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108012.1.A1_at	R	R	CV257275	CV257275	scaffold_3:3714724-3715146(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108036.1.A1_at	R	R	CV256711	CV256711	scaffold_15:4084663-4085170(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108040.1.A1_at	R	R	CV256521	CV256521	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g033400.2	"Myb, DNA-binding; Homeodomain-related "	NA	NA	NA
PtpAffx.108060.1.A1_at	R	R	CV255820	CV255820	scaffold_8:4365253-4366005(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108073.1.A1_at	R	R	CV255440	CV255440	NA	NA	Q94A82	"Nudix hydrolase 19, chloroplastic"	AT5G20070.1	nudix hydrolase homolog 19 	LOC_Os06g04910.1	"hydrolase, NUDIX family protein, expressed"	Medtr8g119760.1	"Isopentenyl-diphosphate delta-isomerase, type 1; ; "	NA	NA	NA
PtpAffx.108092.1.A1_at	R	R	CV254682	CV254682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108095.1.A1_at	R	R	CV254647	CV254647	scaffold_1:30977625-30978081(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108113.1.A1_at	R	R	CV253936	CV253936	scaffold_13:2127251-2127807(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108215.1.A1_at	R	R	CV249503	CV249503	NA	NA	O34313	Trifunctional nucleotide phosphoesterase protein YfkN	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108227.1.A1_at	R	R	CV248879	CV248879	scaffold_19:14655483-14655962(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108242.1.A1_at	R	R	CV248428	CV248428	scaffold_8:1968956-1969093(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108254.1.A1_at	R	R	CV247853	CV247853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108331.1.A1_at	R	R	CV244679	CV244679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108365.1.A1_at	R	R	CV243409	CV243409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108367.1.A1_at	R	R	CV243395	CV243395	NA	NA	NA	NA	AT1G14990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g42120.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.108372.1.A1_at	R	R	CV243186	CV243186	NA	NA	P35415	"Paramyosin, long form"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108380.1.A1_at	R	R	DN492986	DN492986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108404.1.A1_at	R	R	CV241791	CV241791	NA	NA	P05661	"Myosin heavy chain, muscle"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108494.1.A1_at	R	R	CV238512	CV238512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108662.1.A1_at	R	R	CV231180	CV231180	scaffold_16:440577-440825(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.108939.1.S1_at	R	R	AJ778937	AJ778937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109192.1.S1_at	R	R	AJ768750	AJ768750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109204.1.S1_at	R	R	AJ768327	AJ768327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109658.1.S1_at	R	R	CK110902	CK110902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109695.1.S1_at	R	R	CK108608	CK108608	scaffold_18:14860878-14860932(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109755.1.S1_at	R	R	CK105867	CK105867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109780.1.S1_at	R	R	BI125245	BI125245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.10991.1.S1_at	R	R	DN496542	DN496542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109929.1.A1_at	R	R	CK097759	CK097759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109933.1.A1_at	R	R	CK097645	CK097645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109937.1.A1_at	R	R	CK097441	CK097441	scaffold_14:5451357-5451691(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109958.1.S1_at	R	R	CK096942	CK096942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109992.1.A1_at	R	R	CK096073	CK096073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.109998.1.A1_at	R	R	CK095936	CK095936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110018.1.A1_at	R	R	CK095460	CK095460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110023.1.A1_at	R	R	CK095393	CK095393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110038.1.A1_at	R	R	CK094575	CK094575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110041.1.A1_at	R	R	CK094472	CK094472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110043.1.A1_at	R	R	CK094387	CK094387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110051.1.S1_at	R	R	CK104151	CK104151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110063.1.A1_at	R	R	CK093818	CK093818	NA	NA	NA	NA	AT3G57810.3	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.110064.1.A1_at	R	R	CK093568	CK093568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110074.1.A1_at	R	R	BU816299	BU816299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110108.1.A1_at	R	R	CK091363	CK091363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110126.1.A1_at	R	R	CK090808	CK090808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110129.1.A1_at	R	R	CK090767	CK090767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110142.1.A1_at	R	R	CK090177	CK090177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110149.1.A1_at	R	R	CK089958	CK089958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110151.1.A1_at	R	R	BU887894	BU887894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110163.1.A1_at	R	R	CK088444	CK088444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110170.1.A1_at	R	R	CK087423	CK087423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11036.1.A1_at	R	R	CV283821	CV283821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110365.2.A1_at	R	R	DN490384	DN490384	NA	NA	Q9FJL0	Structural maintenance of chromosomes protein 4	AT5G48600.2	structural maintenance of chromosome 3 	LOC_Os05g41750.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	Medtr8g087350.1	Prefoldin; SMCs flexible hinge 	NA	NA	NA
PtpAffx.11056.1.A1_at	R	R	CV282774	CV282774	NA	NA	P21528	"Malate dehydrogenase [NADP], chloroplastic"	AT5G58330.1	lactate/malate dehydrogenase family protein 	LOC_Os08g44810.1	"lactate/malate dehydrogenase, putative, expressed"	AC235664_2.3	"Malate dehydrogenase, active site AC235664.1 6223-3733 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.11064.4.S1_at	R	R	CV260714	CV260714	NA	NA	NA	NA	AT1G47820.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g50350.1	expressed protein	Medtr3g073610.1	hypothetical protein 	NA	NA	NA
PtpAffx.11083.1.A1_at	R	R	CV281185	CV281185	scaffold_1:2266225-2266737(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110857.1.S1_at	R	R	DN492396	DN492396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110874.1.S1_at	R	R	DN496616	DN496616	NA	NA	NA	NA	AT4G27190.1	NB-ARC domain-containing disease resistance protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110894.1.S1_at	R	R	BU892970	BU892970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.110934.1.S1_at	R	R	DN496173	DN496173	scaffold_1:1218925-1219468(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1110.1.A1_at	R	R	CV247029	CV247029	NA	NA	NA	NA	AT5G57860.2	Ubiquitin-like superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.111337.1.S1_at	R	R	DN497077	DN497077	NA	NA	Q9VMU4	60S ribosomal protein L37a	AT3G60245.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	NA	NA	NA
PtpAffx.11140.1.A1_at	R	R	CV278138	CV278138	NA	NA	NA	NA	NA	NA	NA	NA	Medtr8g052590.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	NA	NA	NA
PtpAffx.11149.1.A1_at	R	R	CV277685	CV277685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.111611.1.S1_at	R	R	CK107675	CK107675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.111624.1.S1_at	R	R	BU823990	BU823990	NA	NA	NA	NA	AT5G16740.1	Transmembrane amino acid transporter family protein 	LOC_Os11g19240.1	"transmembrane amino acid transporter protein, putative"	Medtr3g104200.1	"Amino acid transporter, transmembrane "	NA	NA	NA
PtpAffx.111628.1.S1_at	R	R	BU823876	BU823876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.111653.2.S1_at	R	R	CK097264	CK097264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.111725.1.S1_at	R	R	BU819606	BU819606	scaffold_14:5451831-5451875(+) (9)//scaffold_14:5459448-5459492(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11173.1.A1_at	R	R	CV276383	CV276383	NA	NA	Q7ZV82	60S ribosomal protein L27	AT2G32220.1	Ribosomal L27e protein family 	LOC_Os02g18380.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr2g006490.1	Ribosomal protein L27e; KOW 	NA	NA	NA
PtpAffx.111739.1.S1_at	R	R	CK095838	CK095838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.111865.1.A1_at	R	R	BU791187	BU791187	scaffold_17:6415926-6416182(-) (9)	NA	NA	NA	AT1G22340.1	UDP-glucosyl transferase 85A7 	NA	NA	Medtr6g014310.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
PtpAffx.11202.1.A1_at	R	R	CV275295	CV275295	NA	NA	P51418	60S ribosomal protein L18a-2	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	NA	NA	NA
PtpAffx.112060.1.S1_at	R	R	BI124563	BI124563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112082.1.S1_at	R	R	CK094222	CK094222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112265.1.S1_at	R	R	AI162653	AI162653	NA	NA	Q9LU72	Probable inactive purple acid phosphatase 28	AT5G57140.1	purple acid phosphatase 28 	LOC_Os06g48570.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr2g042800.1	Metallophosphoesterase 	NA	NA	NA
PtpAffx.11237.1.A1_at	R	R	CV274001	CV274001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112426.1.S1_at	R	R	DN488504	DN488504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11246.1.A1_at	R	R	CV273690	CV273690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112465.1.S1_at	R	R	DN496745	DN496745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112465.2.A1_at	R	R	DN487139	DN487139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11251.1.A1_at	R	R	CV273329	CV273329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112510.1.S1_at	R	R	DN486232	DN486232	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g062520.1	"ATFP4, related "	NA	NA	NA
PtpAffx.112550.1.A1_at	R	R	DN484652	DN484652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112567.1.A1_at	R	R	DN493293	DN493293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112577.1.A1_at	R	R	DN492745	DN492745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112579.1.A1_at	R	R	DN492649	DN492649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112589.1.A1_at	R	R	DN492064	DN492064	NA	NA	NA	NA	AT2G35736.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112605.1.A1_at	R	R	DN491435	DN491435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11261.1.A1_at	R	R	CV272937	CV272937	NA	NA	A1E295	Cathepsin B	AT1G02305.1	Cysteine proteinases superfamily protein 	LOC_Os05g24550.6	"Papain family cysteine protease domain containing protein, expressed"	Medtr7g134410.1	"Peptidase C1A, papain; Somatotropin hormone; Peptidase C1, propeptide; "	NA	NA	NA
PtpAffx.112636.1.A1_at	R	R	DN490226	DN490226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112647.1.A1_at	R	R	DN489370	DN489370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112653.1.A1_at	R	R	DN489118	DN489118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112686.1.A1_at	R	R	DN487638	DN487638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112687.1.A1_at	R	R	DN487600	DN487600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112689.1.A1_at	R	R	DN487518	DN487518	NA	NA	NA	NA	AT5G41960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g49610.2	expressed protein	Medtr5g008290.1	hypothetical protein 	NA	NA	NA
PtpAffx.112706.1.A1_at	R	R	DN486510	DN486510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112707.1.A1_at	R	R	DN486456	DN486456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112712.1.A1_at	R	R	DN486370	DN486370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112721.1.A1_at	R	R	DN486155	DN486155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112732.1.A1_at	R	R	DN485529	DN485529	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g034870.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.112763.1.A1_at	R	R	DN484482	DN484482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112767.1.A1_at	R	R	DN484381	DN484381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112859.1.A1_at	R	R	BP933614	BP933614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.112860.1.A1_at	R	R	BP933466	BP933466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11289.1.A1_at	R	R	CV271702	CV271702	NA	NA	P38661	Probable protein disulfide-isomerase A6	AT2G47470.1	thioredoxin family protein 	LOC_Os05g06430.2	"OsPDIL2-1  protein disulfide isomerase PDIL2-1, expressed"	Medtr1g107440.1	"Thioredoxin-related; Thioredoxin domain 2; Endoplasmic reticulum ERp29, C-terminal; "	NA	NA	NA
PtpAffx.113298.1.S1_at	R	R	CV266084	CV266084	NA	NA	Q7Y1X1	Esterase	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g037600.1	"Lipolytic enzyme, G-D-S-L "	NA	NA	NA
PtpAffx.11331.1.S1_at	R	R	CF232685	CF232685	NA	NA	P59234	Protein yippee-like	AT2G40110.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g093410.1	Yippee-like protein 	NA	NA	NA
PtpAffx.113725.1.S1_at	R	R	CX171003	CX171003	NA	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G22850.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.2	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr7g124500.1	"Peptidase A1, pepsin "	NA	NA	NA
PtpAffx.113927.1.A1_at	R	R	CV278479	CV278479	NA	NA	NA	NA	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g43970.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138840.1	Alpha/beta hydrolase fold 	NA	NA	NA
PtpAffx.113929.1.A1_at	R	R	CV278215	CV278215	NA	NA	Q9SW96	"Asparaginyl-tRNA synthetase, cytoplasmic 1"	AT5G56680.1	Class II aminoacyl-tRNA and biotin synthetases superfamily protein 	LOC_Os01g27520.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr4g160420.1	"tRNA synthetase, class II (D, K and N); S15/NS1, RNA-binding "	NA	NA	NA
PtpAffx.113945.1.A1_at	R	R	CV277763	CV277763	NA	NA	Q40250	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT5G38430.1	Ribulose bisphosphate carboxylase (small chain) family protein 	LOC_Os12g17600.2	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.1	"Ribulose bisphosphate carboxylase, small chain "	NA	NA	NA
PtpAffx.113977.1.A1_at	R	R	CV276352	CV276352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.113989.1.A1_at	R	R	CV275879	CV275879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.113994.1.A1_at	R	R	CV275506	CV275506	NA	NA	Q8VCH6	24-dehydrocholesterol reductase	AT3G19820.3	cell elongation protein / DWARF1 / DIMINUTO (DIM) 	LOC_Os10g25780.3	"FAD-linked oxidoreductase protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.114005.1.A1_at	R	R	CV275063	CV275063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114010.1.A1_at	R	R	CV274848	CV274848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114028.1.A1_at	R	R	CV274095	CV274095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114048.1.A1_at	R	R	CV273506	CV273506	NA	NA	P0C224	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	NA	NA	NA
PtpAffx.11408.1.A1_at	R	R	CV266946	CV266946	scaffold_6:250195-250456(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114096.2.A1_a_at	R	R	CV257943	CV257943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114180.1.A1_at	R	R	CV268171	CV268171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114299.1.A1_at	R	R	CV264071	CV264071	NA	NA	O59950	40S ribosomal protein S4	AT5G07090.2	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os05g30530.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	NA	NA
PtpAffx.114324.1.A1_at	R	R	CV263478	CV263478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114325.1.A1_at	R	R	CV263474	CV263474	scaffold_1:12374750-12374973(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114326.1.A1_at	R	R	CV263388	CV263388	scaffold_6:20245179-20245327(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114348.1.A1_at	R	R	CV262483	CV262483	scaffold_6:23352847-23353307(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114357.1.A1_at	R	R	CV270166	CV270166	scaffold_3:9972255-9973459(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114390.1.A1_at	R	R	CV260474	CV260474	scaffold_8:5076937-5077143(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114399.1.A1_at	R	R	CV260159	CV260159	NA	NA	P23902	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.2	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os04g36800.2	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	NA	NA	NA
PtpAffx.114434.1.A1_at	R	R	CV258608	CV258608	scaffold_10:19917160-19917607(+) (11)	NA	NA	NA	AT2G36985.1	DVL family protein 	NA	NA	Medtr4g084150.1	DVL 	NA	NA	NA
PtpAffx.114443.1.A1_at	R	R	CV258275	CV258275	scaffold_1:6860250-6860566(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114447.1.A1_at	R	R	CV258198	CV258198	NA	NA	NA	NA	AT2G42570.1	TRICHOME BIREFRINGENCE-LIKE 39 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr2g019150.1	"Protein of unknown function DUF231, plant "	NA	NA	NA
PtpAffx.114456.1.A1_at	R	R	CV257895	CV257895	NA	NA	Q9SMY8	F-box/LRR-repeat protein 15	AT4G33210.1	F-box family protein 	LOC_Os10g25680.1	"OsFBL52 - F-box domain and LRR containing protein, expressed"	Medtr1g019570.1	Cyclin-like F-box 	NA	NA	NA
PtpAffx.114473.1.A1_at	R	R	CV257466	CV257466	scaffold_10:2182344-2182648(-) (11)//scaffold_19:8341433-8341759(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114492.1.A1_at	R	R	CV256891	CV256891	scaffold_10:11176705-11176976(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114679.1.A1_at	R	R	CV249110	CV249110	scaffold_1:10120011-10120448(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.114787.1.A1_at	R	R	CV243792	CV243792	NA	NA	Q8L6Y4	Polycomb group protein EMBRYONIC FLOWER 2	AT5G51230.3	VEFS-Box of polycomb protein 	LOC_Os09g13630.1	"ZOS9-03 - C2H2 zinc finger protein, expressed"	Medtr5g013280.1	"Zinc finger, C2H2-type "	NA	NA	NA
PtpAffx.11519.2.A1_at	R	R	CK106302	CK106302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.115281.1.A1_at	R	R	CV225429	CV225429	NA	NA	Q94AZ4	Probable calcium-binding protein CML13	AT1G12310.1	Calcium-binding EF-hand family protein 	LOC_Os08g02420.1	"OsCML7 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g012030.1	Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.11538.1.A1_at	R	R	CV262126	CV262126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.115526.1.S1_at	R	R	CF230187	CF230187	NA	NA	Q8L7T3	Ubiquitin-conjugating enzyme E2 20	AT1G50490.1	ubiquitin-conjugating enzyme 20 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g103970.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.1156.2.S1_a_at	R	R	BU819152	BU819152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.115708.1.S1_at	R	R	CX657753	CX657753	NA	NA	NA	NA	AT4G17070.1	peptidyl-prolyl cis-trans isomerases 	LOC_Os03g01090.1	"peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed"	Medtr7g092770.1	Cyclophilin-like 	NA	NA	NA
PtpAffx.11614.1.A1_at	R	R	CV259126	CV259126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11624.1.A1_at	R	R	CV258573	CV258573	NA	NA	O04905	Uridylate kinase	AT5G26667.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53790.1	"adenylate kinase, putative, expressed"	Medtr8g009290.1	"Adenylate/cytidine kinase, N-terminal "	NA	NA	NA
PtpAffx.11630.1.A1_at	R	R	CV258476	CV258476	scaffold_10:19460238-19460762(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116338.1.S1_at	R	R	CK106497	CK106497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116348.1.S1_at	R	R	CK106101	CK106101	NA	NA	NA	NA	AT3G02680.1	nijmegen breakage syndrome 1 	LOC_Os10g34580.2	"FHA domain containing protein, putative, expressed"	Medtr5g084040.1	Forkhead-associated 	NA	NA	NA
PtpAffx.116353.1.S1_at	R	R	CK105887	CK105887	scaffold_6:26708607-26709140(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116374.1.S1_at	R	R	BI126643	BI126643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116390.1.S1_at	R	R	CK094936	CK094936	NA	NA	O13614	40S ribosomal protein S10-B	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.2	"Plectin/S10, N-terminal "	NA	NA	NA
PtpAffx.116395.1.S1_at	R	R	CK104666	CK104666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116408.1.S1_at	R	R	BI122154	BI122154	NA	NA	P34762	Conidiation-specific protein 6	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116416.1.S1_at	R	R	CK094041	CK094041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116538.1.A1_at	R	R	CK097941	CK097941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11661.2.A1_at	R	R	CV257624	CV257624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116637.1.A1_at	R	R	CK094758	CK094758	NA	NA	Q9P6C8	Alcohol dehydrogenase 1	NA	NA	LOC_Os04g52280.1	"dehydrogenase, putative, expressed"	Medtr5g032800.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	NA	NA	NA
PtpAffx.116640.1.S1_at	R	R	CK094610	CK094610	NA	NA	Q5B041	Heat shock protein 60	AT3G23990.1	heat shock protein 60 	LOC_Os03g04970.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	NA	NA	NA
PtpAffx.116643.1.A1_at	R	R	CK094574	CK094574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116644.1.A1_at	R	R	CK094567	CK094567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116672.1.A1_at	R	R	CK093463	CK093463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116708.1.A1_at	R	R	CK091369	CK091369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116755.1.A1_at	R	R	CK089718	CK089718	NA	NA	B9HQZ6	"Probable alanyl-tRNA synthetase, chloroplastic"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116760.1.A1_at	R	R	CK089500	CK089500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.116847.1.S1_at	R	R	CF234036	CF234036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11704.1.A1_at	R	R	CV256076	CV256076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.117216.1.A1_at	R	R	BU894000	BU894000	NA	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT2G37710.1	receptor lectin kinase 	LOC_Os04g44900.1	"lectin-like receptor kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	NA	NA	NA
PtpAffx.117416.1.S1_at	R	R	DN503087	DN503087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.117451.1.S1_at	R	R	DN492327	DN492327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11747.2.A1_at	R	R	CV264358	CV264358	NA	NA	Q1JPL7	Pectinesterase/pectinesterase inhibitor 18	AT1G11580.1	methylesterase PCR A 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr7g047030.1	Pectinesterase; Pectinesterase inhibitor 	NA	NA	NA
PtpAffx.117473.2.S1_at	R	R	DN486591	DN486591	NA	NA	P30221	17.8 kDa class I heat shock protein	AT2G29500.1	HSP20-like chaperones superfamily protein 	LOC_Os01g04360.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr4g121620.1	HSP20-like chaperone 	NA	NA	NA
PtpAffx.117571.1.S1_at	R	R	BU887178	BU887178	scaffold_6:4203102-4203156(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.117607.1.A1_at	R	R	DN487887	DN487887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.117774.2.A1_at	R	R	BU819341	BU819341	NA	NA	NA	NA	AT5G25360.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). 	LOC_Os02g10720.1	expressed protein	Medtr4g005450.2	hypothetical protein 	NA	NA	NA
PtpAffx.117823.1.S1_at	R	R	BU874151	BU874151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.117883.1.S1_at	R	R	BU808895	BU808895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.117900.1.S1_at	R	R	BU869924	BU869924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118017.1.S1_at	R	R	BU837893	BU837893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118073.1.S1_at	R	R	DN498942	DN498942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118144.1.S1_at	R	R	CK107473	CK107473	NA	NA	Q7XA39	Putative disease resistance protein RGA4	AT3G14460.1	LRR and NB-ARC domains-containing disease resistance protein 	LOC_Os01g72390.1	"NBS type disease resistance protein, putative"	Medtr3g021730.1	NB-ARC 	NA	NA	NA
PtpAffx.118541.1.S1_at	R	R	CK095450	CK095450	NA	NA	Q4GXH5	60S ribosomal protein L17	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118559.1.S1_at	R	R	CK095185	CK095185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118582.1.A1_at	R	R	BI124880	BI124880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118590.1.S1_at	R	R	BI124620	BI124620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118633.1.S1_at	R	R	BI122671	BI122671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.11865.1.A1_at	R	R	CV249584	CV249584	NA	NA	Q9LEY9	H/ACA ribonucleoprotein complex subunit 2-like protein	AT5G08180.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os06g16290.1	"ribosomal protein L7Ae, putative, expressed"	Medtr8g115430.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	NA	NA	NA
PtpAffx.118874.1.A1_at	R	R	DN486553	DN486553	NA	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.2	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	NA	NA
PtpAffx.118947.1.S1_at	R	R	DN499973	DN499973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.118995.1.S1_at	R	R	BU874655	BU874655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119002.1.S1_at	R	R	BU872606	BU872606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119006.1.S1_at	R	R	BU872141	BU872141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119010.1.A1_at	R	R	DN496969	DN496969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119039.1.S1_at	R	R	DN486369	DN486369	NA	NA	NA	NA	AT5G05970.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os09g09470.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g088530.1	WD40-like 	NA	NA	NA
PtpAffx.11906.1.A1_at	R	R	CV247477	CV247477	scaffold_1:16124147-16124279(-) (10)//scaffold_2969:7-102(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119115.1.A1_at	R	R	DN492246	DN492246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119146.1.A1_at	R	R	DN491153	DN491153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119159.1.A1_at	R	R	DN490496	DN490496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119160.1.A1_at	R	R	DN490470	DN490470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119162.1.A1_at	R	R	DN490244	DN490244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119200.1.A1_at	R	R	DN487607	DN487607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119202.1.A1_at	R	R	DN487550	DN487550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119203.1.A1_at	R	R	DN487548	DN487548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119213.1.A1_at	R	R	DN487199	DN487199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119226.1.A1_at	R	R	DN486766	DN486766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119247.1.A1_at	R	R	DN486218	DN486218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119257.1.A1_at	R	R	DN485519	DN485519	NA	NA	NA	NA	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119293.1.A1_at	R	R	DN484552	DN484552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119426.1.A1_at	R	R	BP932700	BP932700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.119838.2.S1_at	R	R	CK103747	CK103747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120103.1.S1_at	R	R	CK105062	CK105062	NA	NA	Q39214	Disease resistance protein RPM1	AT3G07040.1	NB-ARC domain-containing disease resistance protein 	LOC_Os08g32880.1	"disease resistance protein RPM1, putative"	Medtr5g028020.1	NB-ARC 	NA	NA	NA
PtpAffx.120103.2.S1_at	R	R	CK094722	CK094722	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g028020.1	NB-ARC 	NA	NA	NA
PtpAffx.120301.1.S1_at	R	R	CF235521	CF235521	NA	NA	O74462	Transcription initiation factor TFIID subunit 6	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59 	LOC_Os01g32750.1	"TATA binding protein-associated factor, putative, expressed"	Medtr7g026010.1	Histone-fold/TFIID-TAF/NF-Y 	NA	NA	NA
PtpAffx.120374.1.A1_at	R	R	CV283801	CV283801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120403.1.A1_at	R	R	CV282324	CV282324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120412.1.A1_at	R	R	CV281856	CV281856	NA	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT4G38740.1	rotamase CYP 1 	LOC_Os09g39780.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	NA	NA
PtpAffx.1205.2.S1_at	R	R	DN496820	DN496820	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g070920.2	hypothetical protein 	NA	NA	NA
PtpAffx.120543.1.A1_at	R	R	CV274914	CV274914	NA	NA	Q7SGY6	"Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120545.1.A1_at	R	R	CV274841	CV274841	NA	NA	Q869T1	Twinfilin	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120556.1.A1_at	R	R	CV274589	CV274589	NA	NA	NA	NA	NA	NA	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	NA	NA	NA	NA	NA
PtpAffx.120557.1.A1_at	R	R	CV274545	CV274545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120570.1.A1_at	R	R	CV274186	CV274186	NA	NA	P22589	Polyubiquitin	AT5G03240.3	polyubiquitin 3 	LOC_Os06g46770.6	"ubiquitin family protein, putative, expressed"	Medtr1g079000.1	Ubiquitin 	NA	NA	NA
PtpAffx.120571.1.A1_at	R	R	CV274177	CV274177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120602.1.A1_at	R	R	CV272515	CV272515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120610.1.A1_at	R	R	CV272254	CV272254	scaffold_1:15283317-15283580(+) (9)//scaffold_11:2444421-2444699(-) (9)//scaffold_18:11984556-11984834(-) (11)//scaffold_4:618419-618697(+) (11)//scaffold_4:14496089-14496366(-) (10)	NA	P04146	Copia protein	AT4G23160.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 8 	LOC_Os09g21390.1	"retrotransposon protein, putative, unclassified"	Medtr4g080020.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.120648.1.A1_at	R	R	CV270891	CV270891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120657.1.A1_at	R	R	CV270560	CV270560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120665.1.A1_at	R	R	CV270116	CV270116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120691.1.A1_at	R	R	CV269268	CV269268	scaffold_14:7079088-7079305(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120703.1.A1_at	R	R	CV268835	CV268835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12074.1.A1_at	R	R	CV241615	CV241615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120740.1.A1_at	R	R	CV267390	CV267390	NA	NA	Q9MAH0	Phosphoenolpyruvate carboxylase 1	AT1G53310.3	phosphoenolpyruvate carboxylase 1 	LOC_Os01g55350.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g111660.1	Phosphoenolpyruvate carboxylase 	NA	NA	NA
PtpAffx.120821.1.A1_at	R	R	CV263906	CV263906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120867.1.A1_at	R	R	CV262230	CV262230	scaffold_6:26716822-26717101(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120870.1.A1_at	R	R	CV262195	CV262195	scaffold_7:5357970-5358383(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120923.1.A1_at	R	R	CV260431	CV260431	scaffold_12:11044518-11046732(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120963.1.A1_at	R	R	CV258567	CV258567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120969.1.A1_at	R	R	CV258403	CV258403	scaffold_2:18308028-18308571(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.120991.1.A1_at	R	R	CV257899	CV257899	NA	NA	Q9ASS6	"Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic"	AT5G13120.2	cyclophilin 20-2 	LOC_Os05g01270.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr7g134340.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	NA	NA
PtpAffx.121002.1.A1_at	R	R	CV257542	CV257542	scaffold_7:13367959-13368272(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121007.1.A1_at	R	R	CV257357	CV257357	scaffold_7:1814789-1814973(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121031.1.A1_at	R	R	CV256380	CV256380	scaffold_18:2756915-2758631(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121056.1.A1_at	R	R	CV255824	CV255824	scaffold_4:7420724-7420966(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12108.2.A1_at	R	R	CK095340	CK095340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121145.1.A1_at	R	R	CV252705	CV252705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121227.1.A1_at	R	R	CV248470	CV248470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121323.1.A1_at	R	R	CV244235	CV244235	NA	NA	NA	NA	AT3G07510.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g09930.1	expressed protein	Medtr7g046740.1	hypothetical protein 	NA	NA	NA
PtpAffx.121325.1.A1_at	R	R	CV244091	CV244091	NA	NA	P11996	Larval serum protein 1 beta chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121370.1.A1_at	R	R	CV242512	CV242512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121416.1.A1_at	R	R	CV240754	CV240754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121493.1.A1_at	R	R	CV237871	CV237871	NA	NA	P0ACY3	Uncharacterized protein yeaG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.121523.1.A1_at	R	R	CV236632	CV236632	NA	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT3G20820.1	Leucine-rich repeat (LRR) family protein 	LOC_Os08g39550.1	"polygalacturonase inhibitor 2 precursor, putative, expressed"	Medtr8g037330.1	"LRR receptor-like serine/threonine-protein kinase FLS2 precursor, related "	NA	NA	NA
PtpAffx.12176.4.A1_at	R	R	CV277301	CV277301	NA	NA	O04350	Tubulin-specific chaperone A	AT2G30410.2	tubulin folding cofactor A (KIESEL) 	LOC_Os02g57150.1	"tubulin-specific chaperone A, putative, expressed"	Medtr5g102430.1	Tubulin binding cofactor A 	NA	NA	NA
PtpAffx.12184.2.S1_at	R	R	CX657795	CX657795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12248.1.A1_at	R	R	CV234406	CV234406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12268.2.S1_at	R	R	CK094157	CK094157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.122801.1.S1_at	R	R	BU813545	BU813545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.122814.1.S1_at	R	R	CK094863	CK094863	NA	NA	Q6BU46	"Asparaginyl-tRNA synthetase, cytoplasmic"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.122818.1.S1_at	R	R	CK104754	CK104754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.122819.1.S1_at	R	R	CK104691	CK104691	NA	NA	P52808	60S ribosomal protein L30-1	AT3G18740.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os05g41110.2	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	NA	NA	NA
PtpAffx.122832.1.S1_at	R	R	CK104262	CK104262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.122836.1.S1_at	R	R	CK104213	CK104213	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g079990.1	Leucine-rich repeat 	NA	NA	NA
PtpAffx.122964.1.A1_at	R	R	CK097464	CK097464	NA	NA	Q5XFW8	Protein SEC13 homolog	AT2G30050.1	transducin family protein / WD-40 repeat family protein 	LOC_Os02g04320.2	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.122966.1.A1_at	R	R	CK097407	CK097407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.122984.1.A1_at	R	R	CK096720	CK096720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.122999.1.S1_at	R	R	CK096241	CK096241	NA	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	NA	NA	NA
PtpAffx.12300.1.S1_at	R	R	CV232458	CV232458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123004.1.A1_at	R	R	CK096154	CK096154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123022.1.A1_at	R	R	CK095390	CK095390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123023.1.A1_at	R	R	CK095387	CK095387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123029.1.A1_at	R	R	CK095282	CK095282	NA	NA	P50085	Prohibitin-2	AT4G28510.1	prohibitin 1 	LOC_Os07g15880.1	"mitochondrial prohibitin complex protein 2, putative, expressed"	Medtr4g107930.1	Band 7 protein 	NA	NA	NA
PtpAffx.123050.1.A1_at	R	R	CK094546	CK094546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123067.1.S1_at	R	R	BI122610	BI122610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123070.1.A1_s_at	R	R	CK093879	CK093879	NA	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT4G38740.1	rotamase CYP 1 	LOC_Os06g49480.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	NA	NA
PtpAffx.123074.1.A1_at	R	R	CK093835	CK093835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123076.1.A1_at	R	R	CK093694	CK093694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123080.1.A1_at	R	R	CK093406	CK093406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123150.1.A1_at	R	R	CK090297	CK090297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123152.1.A1_at	R	R	CK090131	CK090131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123154.1.A1_at	R	R	CK090002	CK090002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123158.1.A1_at	R	R	CK089923	CK089923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123159.1.A1_at	R	R	CK089733	CK089733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123169.1.A1_s_at	R	R	CK088992	CK088992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123171.1.A1_at	R	R	CK088734	CK088734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123372.1.S1_at	R	R	CF228763	CF228763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123757.1.S1_s_at	R	R	AJ780241	AJ780241	NA	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.3	calcineurin B-like protein 10 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.123901.1.S1_at	R	R	DN489122	DN489122	NA	NA	P31244	DNA repair protein RAD16	AT1G50410.1	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related 	LOC_Os08g08220.2	"EDA16, putative, expressed"	Medtr2g014500.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	NA	NA
PtpAffx.124027.1.S1_at	R	R	DN486169	DN486169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.124356.1.S1_at	R	R	DN497209	DN497209	NA	NA	Q24154	60S ribosomal protein L29	AT3G06680.1	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g138040.1	Ribosomal L29e protein 	NA	NA	NA
PtpAffx.12439.8.S1_at	R	R	CV268872	CV268872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.124514.1.S1_at	R	R	DN499728	DN499728	scaffold_8:13739683-13740053(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.124540.1.S1_at	R	R	AJ771260	AJ771260	NA	NA	Q5ZA07	E3 ubiquitin-protein ligase makorin	AT3G08505.1	zinc finger (CCCH-type/C3HC4-type RING finger) family protein 	LOC_Os06g21390.2	"Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed"	Medtr3g030250.1	"Zinc finger, CCCH-type; Zinc finger, RING-type "	NA	NA	NA
PtpAffx.124550.1.S1_at	R	R	AI166845	AI166845	scaffold_19:420686-429284(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.124550.1.S1_s_at	R	R	AI166845	AI166845	scaffold_19:420487-429189(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.124582.1.S1_at	R	R	DN499080	DN499080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.124694.1.S1_at	R	R	BU822147	BU822147	NA	NA	C0LGG8	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	AT1G53440.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g090750.1	Protein kinase 	NA	NA	NA
PtpAffx.124754.1.S1_at	R	R	CF228340	CF228340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.124754.1.S1_s_at	R	R	CF228340	CF228340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125027.1.S1_at	R	R	CK095399	CK095399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125084.1.S1_at	R	R	CK094165	CK094165	NA	NA	O13350	"ATP synthase subunit d, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125087.1.S1_at	R	R	CK104099	CK104099	NA	NA	Q9LDQ3	Putative cysteine-rich receptor-like protein kinase 35	AT4G11530.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 34 	LOC_Os07g34980.1	TKL_IRAK_DUF26-lh.9 - DUF26 kinases have homology to DUF26 containing loci	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.125276.1.S1_at	R	R	AI161625	AI161625	NA	NA	P0C895	LRR repeats and ubiquitin-like domain-containing protein At2g30105	AT2G30105.1	"CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1). "	LOC_Os10g31790.1	"ubiquitin family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.125397.1.S1_at	R	R	BU834216	BU834216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125453.2.S1_at	R	R	DN496802	DN496802	NA	NA	NA	NA	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	NA	NA
PtpAffx.125541.1.A1_at	R	R	DN493502	DN493502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125542.1.A1_at	R	R	DN493447	DN493447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125548.1.A1_at	R	R	DN493276	DN493276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125557.1.A1_at	R	R	DN492762	DN492762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125638.1.A1_at	R	R	DN488614	DN488614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125639.1.A1_at	R	R	DN488612	DN488612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12564.1.A1_at	R	R	CV245340	CV245340	NA	NA	A4GYP8	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	LOC_Os04g16830.1	"DNA-directed RNA polymerase subunit beta, putative"	Medtr4g042160.1	"RNA polymerase Rpb1, domain 5 "	NA	NA	NA
PtpAffx.125658.1.A1_at	R	R	DN487640	DN487640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12567.1.A1_at	R	R	CV256742	CV256742	scaffold_1:22694853-22695120(+) (11)//scaffold_1:22719851-22720117(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125678.1.A1_at	R	R	DN486990	DN486990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125690.1.A1_at	R	R	DN486667	DN486667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125704.1.A1_at	R	R	DN486473	DN486473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125718.1.A1_at	R	R	DN486011	DN486011	NA	NA	P55216	Putative cystathionine gamma-lyase 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125742.1.A1_at	R	R	DN484633	DN484633	NA	NA	A3KG59	Peptidase M20 domain-containing protein 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1258.10.S1_at	R	R	CV275632	CV275632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125834.1.A1_at	R	R	BP934322	BP934322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.125941.1.A1_at	R	R	BP929833	BP929833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.126235.2.S1_at	R	R	CV258769	CV258769	NA	NA	P51430	40S ribosomal protein S6-2	AT5G10360.1	Ribosomal protein S6e 	LOC_Os07g42950.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	NA	NA	NA
PtpAffx.126435.1.S1_at	R	R	CV251607	CV251607	scaffold_8:2742006-2751346(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g047360.1	hypothetical protein 	NA	NA	NA
PtpAffx.126472.1.S1_at	R	R	CX181067	CX181067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.126553.1.S1_at	R	R	CX174173	CX174173	scaffold_1:10152411-10152801(+) (9)	NA	Q5W7F2	ADP-ribosylation factor GTPase-activating protein AGD3	AT5G13300.1	ARF GTPase-activating protein 	LOC_Os09g33600.1	"ARF GTPase-activating domain-containing protein, putative, expressed"	Medtr7g020730.1	Arf GTPase activating protein; BAR; Pleckstrin homology-type 	NA	NA	NA
PtpAffx.12675.13.S1_at	R	R	CV272617	CV272617	NA	NA	Q9FK81	Uncharacterized protein At5g22580	AT5G22580.1	Stress responsive A/B Barrel Domain 	LOC_Os11g05290.1	"stress responsive A/B Barrel domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.12675.5.A1_at	R	R	CV276882	CV276882	NA	NA	NA	NA	AT1G66240.1	homolog of anti-oxidant 1 	LOC_Os08g10480.1	heavy metal-associated domain containing protein	Medtr1g117110.1	Heavy metal transport/detoxification protein 	NA	NA	NA
PtpAffx.12675.8.S1_at	R	R	CK107191	CK107191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.126838.1.A1_at	R	R	CV283963	CV283963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.126842.1.A1_at	R	R	CV283830	CV283830	NA	NA	NA	NA	AT2G07599.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01040.1). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.126848.1.A1_at	R	R	CV283487	CV283487	NA	NA	Q9FJX0	Peptidyl-prolyl cis-trans isomerase-like 2	AT5G67530.1	plant U-box 49 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	NA	NA
PtpAffx.126851.1.A1_at	R	R	CV283322	CV283322	NA	NA	Q9FLN4	"50S ribosomal protein L27, chloroplastic"	AT5G40950.1	ribosomal protein large subunit 27 	LOC_Os01g69950.1	"ribosomal protein L27, putative, expressed"	Medtr3g021590.1	Ribosomal protein L27 	NA	NA	NA
PtpAffx.126863.1.A1_at	R	R	CV282919	CV282919	NA	NA	Q40519	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	NA	NA	NA
PtpAffx.126949.1.A1_at	R	R	CV278241	CV278241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.126979.1.A1_at	R	R	CV276347	CV276347	scaffold_18:1590107-1590588(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127005.1.A1_at	R	R	CV275241	CV275241	NA	NA	Q9FM65	Fasciclin-like arabinogalactan protein 1	AT5G55730.2	FASCICLIN-like arabinogalactan 1 	LOC_Os09g07350.1	"fasciclin-like arabinogalactan protein 8 precursor, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	NA	NA	NA
PtpAffx.127013.1.A1_at	R	R	CV274934	CV274934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127017.1.A1_at	R	R	CV274816	CV274816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127026.1.A1_at	R	R	CN518638	CN518638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127033.1.A1_at	R	R	CV274127	CV274127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127035.1.A1_at	R	R	CV274016	CV274016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127050.1.A1_at	R	R	CV273375	CV273375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127054.1.A1_at	R	R	CV273274	CV273274	NA	NA	P02576	"Actin, plasmodial isoform"	AT3G12110.1	actin-11 	LOC_Os03g50885.1	"actin, putative, expressed"	Medtr3g144140.2	Actin/actin-like 	NA	NA	NA
PtpAffx.127055.1.A1_at	R	R	CV273242	CV273242	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127132.1.A1_at	R	R	CV270339	CV270339	scaffold_12:1922129-1922654(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127163.1.A1_at	R	R	CV269286	CV269286	scaffold_1:42295230-42295351(+) (11)//scaffold_1:44056641-44056762(-) (11)//scaffold_1:48049549-48049632(-) (9)//scaffold_1:48212116-48212237(+) (11)//scaffold_11:6588934-6589055(+) (9)//scaffold_11:7079262-7079383(+) (10)//scaffold_13:5159052-5159173(+) (11)//scaffold_15:14436607-14436728(-) (11)//scaffold_15:14862761-14862882(+) (9)//scaffold_19:2373383-2373504(+) (11)//scaffold_19:12739562-12739683(+) (11)//scaffold_262:4346-4467(+) (11)//scaffold_291:5099-5220(+) (11)//scaffold_291:15837-15958(+) (11)//scaffold_3:10282227-10282348(-) (11)//scaffold_43:57730-57851(+) (10)//scaffold_46:170379-170500(+) (10)//scaffold_5:2091834-2091955(+) (11)//scaffold_6:21403599-21403720(+) (9)//scaffold_61:52554-52637(+) (9)//scaffold_767:5713-5834(-) (11)//scaffold_8:11788642-11788763(-) (10)//scaffold_86:9622-9743(+) (10)//scaffold_97:49279-49349(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127174.1.A1_at	R	R	CV268280	CV268280	scaffold_8:12232406-12232712(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127176.1.A1_at	R	R	CV268167	CV268167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127219.1.A1_at	R	R	CV259760	CV259760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127301.1.A1_a_at	R	R	CV267861	CV267861	NA	NA	Q9SEI0	Transcription factor WER	AT5G14750.1	myb domain protein 66 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr8g105480.1	Homeodomain-like; 	NA	NA	NA
PtpAffx.127302.1.A1_at	R	R	CV274851	CV274851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127302.2.A1_at	R	R	CV262934	CV262934	scaffold_15:3082259-3083713(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1274.1.A1_at	R	R	CV235034	CV235034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.12741.2.A1_at	R	R	CV273182	CV273182	NA	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	NA	NA	NA
PtpAffx.127413.1.A1_at	R	R	CV258524	CV258524	scaffold_8:15316027-15316097(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127415.1.A1_at	R	R	CV258425	CV258425	scaffold_13:852671-852929(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127416.1.A1_at	R	R	CV258415	CV258415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127426.1.A1_at	R	R	CV258167	CV258167	scaffold_104:51895-52123(+) (9)//scaffold_7:11326780-11327008(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127427.1.A1_at	R	R	CV258147	CV258147	NA	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT2G30700.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 68 Blast hits to 67 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g38980.3	expressed protein	NA	NA	NA	NA	NA
PtpAffx.127430.1.A1_at	R	R	CV258055	CV258055	scaffold_9:6449606-6449932(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127431.1.A1_at	R	R	CV258000	CV258000	NA	NA	Q31708	"Ribosomal protein S4, mitochondrial"	ATMG00290.1	mitochondrial ribosomal protein S4 	NA	NA	Medtr1g005030.1	RNA-binding S4 	NA	NA	NA
PtpAffx.127511.1.A1_at	R	R	CV255487	CV255487	scaffold_1:39156394-39156614(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127521.1.A1_at	R	R	CV254399	CV254399	scaffold_1:35944091-35944413(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127525.1.A1_at	R	R	CV255126	CV255126	scaffold_6:21062263-21062526(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127538.1.A1_at	R	R	CV254780	CV254780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127560.1.A1_at	R	R	CV253697	CV253697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127569.2.A1_at	R	R	CV253334	CV253334	scaffold_1:47828195-47828897(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127683.1.A1_a_at	R	R	CV248331	CV248331	scaffold_8:879347-879492(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127683.1.A1_at	R	R	CV248331	CV248331	scaffold_8:879094-879359(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127683.2.A1_at	R	R	CV265595	CV265595	scaffold_8:878212-878704(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127697.1.A1_at	R	R	CV247767	CV247767	NA	NA	NA	NA	AT1G45976.1	S-ribonuclease binding protein 1 	LOC_Os03g15730.2	"S-RNase-binding protein, putative, expressed"	Medtr1g024220.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.127715.1.A1_at	R	R	CV247114	CV247114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127748.1.A1_at	R	R	CV245578	CV245578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127831.1.A1_at	R	R	CV242485	CV242485	scaffold_14:16997812-16998304(-) (11)	NA	P14381	Transposon TX1 uncharacterized 149 kDa protein	AT1G43760.1	DNAse I-like superfamily protein 	LOC_Os02g44440.1	"retrotransposon protein, putative, unclassified"	Medtr7g047570.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.127879.1.A1_at	R	R	CV241028	CV241028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127900.1.A1_at	R	R	CV266519	CV266519	NA	NA	NA	NA	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.12794.4.S1_at	R	R	CV276069	CV276069	scaffold_17:11460287-11460553(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.127950.1.A1_at	R	R	CV238261	CV238261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.128305.1.S1_at	R	R	AJ769327	AJ769327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.128426.1.S1_at	R	R	AJ773187	AJ773187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129071.1.S1_at	R	R	CA821826	CA821826	NA	NA	Q0ZIY9	Cytochrome b6	ATCG00720.1	photosynthetic electron transfer B 	LOC_Os10g21324.1	"cytochrome b6, putative"	Medtr7g118440.1	"Cytochrome b/b6, N-terminal "	NA	NA	NA
PtpAffx.129241.1.S1_at	R	R	BI127103	BI127103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129250.1.S1_at	R	R	CK105082	CK105082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129263.1.S1_at	R	R	CK104551	CK104551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129384.1.A1_at	R	R	CK097723	CK097723	NA	NA	NA	NA	AT3G07330.1	Cellulose-synthase-like C6 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr8g012660.1	"Glycosyl transferase, family 2; Inorganic pyrophosphatase "	NA	NA	NA
PtpAffx.129407.1.A1_at	R	R	CK096903	CK096903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129445.1.A1_at	R	R	CK095406	CK095406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129449.1.A1_at	R	R	CK095142	CK095142	NA	NA	Q04013	Mitochondrial DNA replication protein YHM2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129451.1.A1_at	R	R	CK095034	CK095034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129463.1.A1_at	R	R	CK094723	CK094723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129464.1.A1_at	R	R	CK094708	CK094708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129472.1.A1_at	R	R	CK094561	CK094561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129493.1.A1_at	R	R	CK093480	CK093480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129569.1.A1_at	R	R	CK090373	CK090373	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129652.1.S1_at	R	R	CK102849	CK102849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.129769.1.S1_a_at	R	R	CF228485	CF228485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.130378.1.S1_at	R	R	DN496056	DN496056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1304.1.A1_at	R	R	CV232642	CV232642	scaffold_1:5578764-5579190(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13062.5.A1_at	R	R	CV272734	CV272734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.130739.1.S1_at	R	R	DN497250	DN497250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.130749.1.S1_at	R	R	BU872118	BU872118	NA	NA	A8CAG3	60S ribosomal protein L17	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os08g41810.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	NA	NA	NA
PtpAffx.130847.1.S1_at	R	R	CX653960	CX653960	NA	NA	NA	NA	AT4G15420.1	Ubiquitin fusion degradation UFD1 family protein 	LOC_Os01g35040.1	"ZOS1-09 - C2H2 zinc finger protein, expressed"	Medtr5g093620.1	"Ubiquitin fusion degradation protein UFD1; Zinc finger, C2H2-type; Peptidase, archaeal and bacterial C-terminal "	NA	NA	NA
PtpAffx.131.6.A1_at	R	R	DN494115	DN494115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131043.1.S1_at	R	R	CK107620	CK107620	NA	NA	NA	NA	AT1G65280.1	DNAJ heat shock N-terminal domain-containing protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131056.1.S1_at	R	R	BU897285	BU897285	NA	NA	O59737	GTPase-activating protein gyp1	AT2G30710.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g34040.1	"TBC domain containing protein, expressed"	Medtr2g120560.1	RabGAP/TBC 	NA	NA	NA
PtpAffx.131071.1.S1_at	R	R	BI131668	BI131668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131106.1.S1_at	R	R	CK106612	CK106612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131110.1.S1_at	R	R	CK106535	CK106535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131139.1.S1_at	R	R	BU820370	BU820370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131207.1.S1_at	R	R	CK095473	CK095473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131212.1.A1_at	R	R	DN486061	DN486061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131490.1.S1_at	R	R	CK105257	CK105257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131493.1.S1_at	R	R	CK105206	CK105206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1315.3.A1_at	R	R	DN486845	DN486845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13176.5.S1_at	R	R	CF232111	CF232111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13176.7.A1_a_at	R	R	CV260070	CV260070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131860.1.S1_at	R	R	DN490026	DN490026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131861.1.S1_at	R	R	BU837542	BU837542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131900.1.S1_at	R	R	BU864822	BU864822	scaffold_13:6218506-6218633(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131957.1.S1_at	R	R	BU891667	BU891667	scaffold_15:5031634-5031674(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131967.1.S1_at	R	R	DN495991	DN495991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.131973.1.S1_at	R	R	DN495651	DN495651	scaffold_15:12423052-12423128(+) (10)//scaffold_88:87781-87875(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132011.1.S1_at	R	R	DN484384	DN484384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132024.1.A1_at	R	R	DN493469	DN493469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132045.1.A1_at	R	R	DN492653	DN492653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132074.1.S1_at	R	R	CK113848	CK113848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132147.1.A1_at	R	R	DN488338	DN488338	NA	NA	P0C2F6	Putative ribonuclease H protein At1g65750	AT5G42905.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	NA	NA	Medtr2g037840.1	Ribonuclease H; En/Spm-like transposon proteins 	NA	NA	NA
PtpAffx.132150.1.A1_at	R	R	DN488173	DN488173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132173.1.A1_at	R	R	DN487132	DN487132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132193.1.A1_at	R	R	DN486815	DN486815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132197.1.A1_at	R	R	DN486639	DN486639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132209.1.A1_at	R	R	DN486133	DN486133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132215.1.A1_at	R	R	DN485726	DN485726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13229.1.S1_at	R	R	CV273494	CV273494	NA	NA	Q9C5K8	Protein TIFY 3B	AT5G20900.1	jasmonate-zim-domain protein 12 	LOC_Os04g55920.2	"zinc-finger protein, putative, expressed"	Medtr2g052350.1	ZIM 	NA	NA	NA
PtpAffx.132628.1.S1_at	R	R	AJ777788	AJ777788	NA	NA	Q9SUP6	Probable WRKY transcription factor 53	AT4G23810.1	WRKY family transcription factor 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	NA	NA	NA
PtpAffx.132632.1.S1_at	R	R	CF232422	CF232422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13269.1.S1_at	R	R	CK115425	CK115425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.132962.1.S1_at	R	R	BU873565	BU873565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133105.1.S1_at	R	R	CX175170	CX175170	scaffold_1:20956335-20956456(-) (11)//scaffold_14:14503737-14503858(-) (11)//scaffold_3:8012589-8012710(+) (11)//scaffold_7:12048972-12049093(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133318.1.A1_at	R	R	CV282398	CV282398	NA	NA	Q851Y7	"Monothiol glutaredoxin-S7, chloroplastic"	AT3G54900.1	CAX interacting protein 1 	LOC_Os03g63420.1	"OsGrx_S14 - glutaredoxin subgroup II, expressed"	Medtr7g089300.1	Glutaredoxin-related protein; Glutaredoxin active site 	NA	NA	NA
PtpAffx.13334.1.S1_at	R	R	CK111317	CK111317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133358.1.A1_at	R	R	CV280427	CV280427	scaffold_15:13167573-13168120(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133444.1.A1_at	R	R	CV275531	CV275531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133455.1.A1_at	R	R	CV275107	CV275107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133474.1.A1_at	R	R	CV274620	CV274620	NA	NA	O54161	Alpha-L-arabinofuranosidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133477.1.A1_at	R	R	CV274428	CV274428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133487.1.A1_at	R	R	CV274084	CV274084	NA	NA	O65082	60S ribosomal protein L15-2	AT4G17390.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	NA	NA	NA
PtpAffx.133492.1.A1_at	R	R	CV273797	CV273797	NA	NA	Q0DKW8	Hydrophobic protein LTI6B	NA	NA	LOC_Os07g44180.1	"OsRCI2-10 - Hydrophobic protein LTI6A, expressed"	Medtr7g134790.1	Protein of unknown function UPF0057 	NA	NA	NA
PtpAffx.133499.1.A1_at	R	R	CV273640	CV273640	NA	NA	NA	NA	AT1G65220.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	NA	NA	NA
PtpAffx.133501.1.A1_at	R	R	CV273617	CV273617	NA	NA	P0A352	Cold shock-like protein CspA	AT4G38680.1	glycine rich protein 2 	LOC_Os02g02870.1	"glycine-rich protein 2, putative, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	NA	NA	NA
PtpAffx.133555.1.A1_at	R	R	CV271179	CV271179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133596.1.A1_at	R	R	CV241758	CV241758	scaffold_10:11792919-11793439(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133642.1.A1_at	R	R	CV261791	CV261791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133692.1.A1_at	R	R	CV266518	CV266518	NA	NA	P50303	S-adenosylmethionine synthase 3 (Fragment)	AT3G17390.1	S-adenosylmethionine synthetase family protein 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	NA	NA	NA
PtpAffx.133711.1.A1_s_at	R	R	CV266268	CV266268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133751.1.A1_at	R	R	CV264145	CV264145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133759.1.A1_at	R	R	CV255921	CV255921	scaffold_8:2534479-2534723(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133887.1.A1_at	R	R	CV257919	CV257919	scaffold_20:345063-345577(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133888.1.A1_at	R	R	CV257885	CV257885	scaffold_1:41171542-41171765(+) (11)//scaffold_14:12090471-12090694(-) (11)//scaffold_19:7174334-7174557(-) (11)//scaffold_2:19747863-19748081(-) (10)//scaffold_20:376330-376547(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133894.1.A1_at	R	R	CV257706	CV257706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133909.1.A1_at	R	R	CV256870	CV256870	scaffold_14:15904437-15905181(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.133929.1.A1_at	R	R	CV256255	CV256255	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g006390.1	hypothetical protein 	NA	NA	NA
PtpAffx.133936.1.A1_at	R	R	CV245328	CV245328	scaffold_13:7813984-7814367(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134005.1.A1_at	R	R	CV253586	CV253586	scaffold_14:5678019-5678423(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134013.1.A1_at	R	R	CV253319	CV253319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134013.1.A1_s_at	R	R	CV253319	CV253319	scaffold_10:11630268-11630348(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134139.1.A1_at	R	R	CV247008	CV247008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13421.1.S1_at	R	R	BU823258	BU823258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134222.1.A1_at	R	R	CV243272	CV243272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134406.1.A1_at	R	R	CV236429	CV236429	scaffold_19:928177-928220(-) (9)//scaffold_19:2893637-2893680(+) (9)//scaffold_7:39837-39904(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134411.1.A1_at	R	R	BP929926	BP929926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134493.1.A1_at	R	R	CV233625	CV233625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.134560.1.A1_at	R	R	CV231254	CV231254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13475.1.S1_at	R	R	BU817426	BU817426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13476.1.S1_at	R	R	CK095443	CK095443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13483.1.S1_at	R	R	CK095196	CK095196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13495.1.S1_at	R	R	BI122076	BI122076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13496.1.S1_at	R	R	CK094746	CK094746	NA	NA	Q09196	Myosin regulatory light chain cdc4	AT5G21274.1	calmodulin 6 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.1350.2.S1_at	R	R	CV253481	CV253481	NA	NA	Q9M2K6	"Glucan endo-1,3-beta-glucosidase-like protein 1"	AT3G58100.1	plasmodesmata callose-binding protein 5 	LOC_Os06g34660.1	"X8 domain containing protein, expressed"	AC233678_6.1	X8 AC233678.1 26026-27089 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.13504.1.S1_at	R	R	CK104476	CK104476	NA	NA	O74533	Cytochrome b-c1 complex subunit 7	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13505.1.S1_at	R	R	BI124081	BI124081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13507.1.A1_at	R	R	CK094333	CK094333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135486.1.S1_at	R	R	CK115458	CK115458	NA	NA	NA	NA	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	NA	NA	NA
PtpAffx.135559.2.S1_at	R	R	CK111444	CK111444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135559.3.S1_at	R	R	CK111314	CK111314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135626.1.S1_at	R	R	CK107703	CK107703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135631.1.S1_a_at	R	R	CK107592	CK107592	scaffold_7:929567-929612(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135631.1.S1_at	R	R	CK107592	CK107592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135689.1.S1_at	R	R	CK105862	CK105862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135874.1.A1_at	R	R	CK097678	CK097678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135881.1.A1_at	R	R	CK097367	CK097367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135943.1.A1_at	R	R	CK095661	CK095661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135963.1.A1_at	R	R	CK094985	CK094985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135976.1.A1_at	R	R	CK094701	CK094701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135989.1.A1_at	R	R	CK094264	CK094264	NA	NA	O59827	Glutathione S-transferase 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.135992.1.A1_at	R	R	CK094213	CK094213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136002.1.A1_at	R	R	CK093980	CK093980	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136010.1.A1_at	R	R	CK093842	CK093842	NA	NA	Q09845	Glycerol-3-phosphate dehydrogenase [NAD+] 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136021.1.A1_at	R	R	CK092890	CK092890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136038.1.A1_at	R	R	CK091462	CK091462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136057.1.A1_at	R	R	CK090954	CK090954	scaffold_7:567064-567561(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136087.1.A1_at	R	R	CK089502	CK089502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136099.1.A1_at	R	R	CK087867	CK087867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13620.1.S1_at	R	R	BU824688	BU824688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13627.1.S1_at	R	R	CK096293	CK096293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13627.2.S1_at	R	R	BU823841	BU823841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13632.1.A1_at	R	R	CK097375	CK097375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13650.1.S1_at	R	R	CK096928	CK096928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13665.1.A1_at	R	R	CK096657	CK096657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13681.2.S1_at	R	R	CV268082	CV268082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13685.1.A1_at	R	R	CK095978	CK095978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.136915.1.S1_at	R	R	CK095834	CK095834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13701.1.A1_at	R	R	CK095428	CK095428	NA	NA	O64730	Probable protein phosphatase 2C 26	AT2G30170.1	Protein phosphatase 2C family protein 	LOC_Os01g07090.1	"5-azacytidine resistance protein azr1, putative, expressed"	Medtr3g033950.1	Protein phosphatase 2C-like 	NA	NA	NA
PtpAffx.13703.1.S1_at	R	R	CK095412	CK095412	NA	NA	Q500Y9	NADH kinase	AT1G78590.1	NAD(H) kinase 3 	LOC_Os09g17680.1	"NAD kinase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.13704.1.A1_at	R	R	BI126698	BI126698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13706.1.S1_at	R	R	CK095298	CK095298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13712.1.S1_at	R	R	CK105053	CK105053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13713.1.S1_at	R	R	CK104970	CK104970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13714.1.A1_at	R	R	CK095001	CK095001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13722.1.S1_at	R	R	CK094756	CK094756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13723.1.A1_at	R	R	CK094715	CK094715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.137246.1.S1_at	R	R	DN497384	DN497384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13725.1.A1_at	R	R	CK094609	CK094609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13729.1.A1_at	R	R	CK094512	CK094512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.137304.1.S1_at	R	R	DN496712	DN496712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13731.1.S1_at	R	R	BI123652	BI123652	NA	NA	P62792	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	NA	NA
PtpAffx.13737.1.A1_at	R	R	CK094227	CK094227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13745.1.S1_at	R	R	CK103978	CK103978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13746.1.A1_at	R	R	CK093940	CK093940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13749.1.A1_at	R	R	CK093872	CK093872	NA	NA	NA	NA	AT1G18180.1	Protein of unknown function (DUF1295) 	LOC_Os03g50070.1	"DUF1295 domain containing protein, putative, expressed"	Medtr4g155170.1	Protein of unknown function DUF1295 	NA	NA	NA
PtpAffx.13751.1.S1_at	R	R	CK093848	CK093848	NA	NA	O13639	Adenosylhomocysteinase	AT3G23810.1	S-adenosyl-l-homocysteine (SAH) hydrolase 2 	LOC_Os11g26850.2	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr3g104810.1	S-adenosyl-L-homocysteine hydrolase 	NA	NA	NA
PtpAffx.137608.1.S1_at	R	R	CK107230	CK107230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13761.1.A1_at	R	R	CK092796	CK092796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.137657.1.S1_at	R	R	BU821480	BU821480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.137671.1.S1_at	R	R	CK096482	CK096482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13771.1.A1_at	R	R	CK091804	CK091804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.137725.1.S1_at	R	R	CK105612	CK105612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.137731.1.S1_at	R	R	CK105537	CK105537	NA	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.1	expressed protein	Medtr4g156620.1	hypothetical protein 	NA	NA	NA
PtpAffx.13814.1.A1_at	R	R	CK090752	CK090752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13820.1.A1_at	R	R	CK090569	CK090569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13838.1.A1_at	R	R	CK089504	CK089504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138414.1.S1_at	R	R	CX657512	CX657512	NA	NA	NA	NA	AT3G18270.1	"cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene "	LOC_Os01g04630.1	"muconate cycloisomerase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.138417.1.S1_at	R	R	DN488492	DN488492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13843.1.A1_at	R	R	CK089142	CK089142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13844.1.A1_at	R	R	CK089064	CK089064	scaffold_13:12787866-12787917(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138442.1.S1_at	R	R	BU872603	BU872603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138443.1.S1_at	R	R	BU872251	BU872251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138565.1.A1_at	R	R	DN492811	DN492811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138577.1.A1_at	R	R	DN492247	DN492247	scaffold_12:13328776-13329050(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138585.1.A1_at	R	R	DN492036	DN492036	scaffold_5:7710129-7710546(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13860.1.A1_at	R	R	CK087833	CK087833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13861.1.A1_at	R	R	CK087750	CK087750	NA	NA	P73241	Cation-transporting ATPase pacS	AT5G44790.1	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) 	LOC_Os02g10290.1	"copper-transporting ATPase, putative, expressed"	Medtr5g010530.1	"ATPase, E1-E2 type "	NA	NA	NA
PtpAffx.138651.1.A1_at	R	R	DN489027	DN489027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138673.1.S1_at	R	R	DN487494	DN487494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138706.1.A1_at	R	R	DN486687	DN486687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138719.1.A1_at	R	R	DN486331	DN486331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138720.1.A1_at	R	R	DN486319	DN486319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138729.1.A1_at	R	R	DN485633	DN485633	NA	NA	NA	NA	AT3G10870.1	methyl esterase 17 	NA	NA	Medtr5g076890.1	Alpha/beta hydrolase fold 	NA	NA	NA
PtpAffx.138731.1.A1_at	R	R	DN485606	DN485606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138755.1.A1_at	R	R	DN484469	DN484469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138760.1.A1_at	R	R	DN484271	DN484271	NA	NA	Q07463	"Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic (Fragment)"	AT3G21110.2	purin 7 	LOC_Os09g29190.2	"phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed"	Medtr5g074460.1	SAICAR synthetase 	NA	NA	NA
PtpAffx.138813.2.A1_at	R	R	BP931870	BP931870	scaffold_505:13869-14141(-) (9)	NA	P16638	ATP-citrate synthase	AT1G09430.1	ATP-citrate lyase A-3 	LOC_Os12g37870.1	"ATP-grasp domain containing protein, expressed"	Medtr5g035230.1	"ATP-grasp fold, succinyl-CoA synthetase-type "	NA	NA	NA
PtpAffx.138882.1.A1_at	R	R	BP933079	BP933079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138953.1.A1_at	R	R	BP930399	BP930399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.138961.1.A1_at	R	R	BP930019	BP930019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13917.1.S1_at	R	R	CF234871	CF234871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.13927.1.S1_at	R	R	CX660204	CX660204	NA	NA	Q3UHX9	Uncharacterized protein C9orf114 homolog	AT5G19300.1	"CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). "	LOC_Os04g17064.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.139538.1.S1_at	R	R	DN499819	DN499819	NA	NA	Q9ASX5	"Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic"	AT5G05200.1	Protein kinase superfamily protein 	LOC_Os07g12530.1	"ABC1 family domain containing protein, putative, expressed"	Medtr5g076860.1	Protein kinase-like 	NA	NA	NA
PtpAffx.139756.1.S1_at	R	R	CX171615	CX171615	NA	NA	NA	NA	AT1G15200.3	protein-protein interaction regulator family protein 	LOC_Os03g49520.2	"pinin/SDK/memA protein, putative, expressed"	Medtr2g007930.1	"Pinin/SDK/memA protein, putative "	NA	NA	NA
PtpAffx.1398.1.S1_at	R	R	CV233963	CV233963	scaffold_1:46612254-46613753(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1398.14.S1_at	R	R	CV239988	CV239988	NA	NA	P29687	Ras-related protein Rab5	AT3G54840.1	Ras-related small GTP-binding family protein 	LOC_Os10g30520.1	"ras-related protein, putative, expressed"	Medtr2g123110.1	"Ras small GTPase, Rab type; "	NA	NA	NA
PtpAffx.1398.8.A1_at	R	R	CV271470	CV271470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.139965.1.A1_at	R	R	CV278576	CV278576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.139994.1.A1_at	R	R	CV276858	CV276858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140007.1.A1_at	R	R	CV276317	CV276317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140016.1.A1_at	R	R	CV275895	CV275895	NA	NA	O49073	Superoxide dismutase [Cu-Zn]	AT1G08830.2	copper/zinc superoxide dismutase 1 	LOC_Os03g22810.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr7g140060.1	"Superoxide dismutase, copper/zinc binding "	NA	NA	NA
PtpAffx.140020.1.A1_at	R	R	CV275853	CV275853	NA	NA	Q5AR04	"Probable mannan endo-1,4-beta-mannosidase F"	AT1G02310.1	Glycosyl hydrolase superfamily protein 	LOC_Os02g52800.1	"OsMan03 - Endo-Beta-Mannanase, expressed"	Medtr1g103540.1	"Mannan endo-1,4-beta-mannosidase 4 precursor, putative "	NA	NA	NA
PtpAffx.140035.1.A1_at	R	R	CV275208	CV275208	NA	NA	NA	NA	AT3G13882.1	Ribosomal protein L34 	LOC_Os01g39010.1	"50S ribosomal protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.140037.1.A1_at	R	R	CV275106	CV275106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140040.1.A1_at	R	R	CV274876	CV274876	NA	NA	C0SPA5	Probable formaldehyde dehydrogenase AdhA	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032680.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	NA	NA	NA
PtpAffx.140044.1.A1_at	R	R	CV274643	CV274643	NA	NA	Q4LAY1	40S ribosomal protein S29	AT4G33865.1	Ribosomal protein S14p/S29e family protein 	LOC_Os11g41610.1	"40S ribosomal protein S29, putative"	Medtr5g005230.1	Ribosomal protein S14 	NA	NA	NA
PtpAffx.140045.1.A1_at	R	R	CV274672	CV274672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140052.1.A1_at	R	R	CV274477	CV274477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140059.1.A1_at	R	R	CV274261	CV274261	NA	NA	A4GYX2	"NAD(P)H-quinone oxidoreductase subunit H, chloroplastic"	ATCG01110.1	NAD(P)H dehydrogenase subunit H 	LOC_Os10g21394.1	"NADPH-dependent oxidoreductase, putative"	Medtr4g022970.1	"NADH-ubiquinone oxidoreductase, chain 49kDa; Respiratory-chain NADH dehydrogenase, subunit 1 "	NA	NA	NA
PtpAffx.140060.1.A1_at	R	R	CV274189	CV274189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140071.1.A1_at	R	R	CV273813	CV273813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140077.1.A1_at	R	R	CV273401	CV273401	NA	NA	O49453	Uncharacterized protein At4g28440	AT1G23750.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	NA	NA	NA
PtpAffx.140084.2.A1_a_at	R	R	CV273281	CV273281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140093.1.A1_at	R	R	CV273001	CV273001	NA	NA	NA	NA	AT5G54430.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os07g36600.3	"universal stress protein domain containing protein, putative, expressed"	Medtr2g103170.1	UspA 	NA	NA	NA
PtpAffx.140129.1.A1_at	R	R	CV271008	CV271008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140162.1.A1_at	R	R	CV268853	CV268853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140163.1.A1_at	R	R	CV267717	CV267717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140199.1.A1_at	R	R	CV267766	CV267766	scaffold_1:36329027-36329268(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140288.1.A1_at	R	R	CV263850	CV263850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140293.1.A1_at	R	R	CV263648	CV263648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1403.2.S1_at	R	R	CX660430	CX660430	NA	NA	Q93YP0	Ubiquitin-conjugating enzyme E2 variant 1A	AT1G23260.1	MMS ZWEI homologue 1 	LOC_Os03g50440.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g157390.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.140305.1.A1_at	R	R	CV263213	CV263213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140351.1.A1_at	R	R	CV261123	CV261123	NA	NA	Q6L482	Probable protein phosphatase 2C 48	AT3G05640.2	Protein phosphatase 2C family protein 	LOC_Os05g29030.2	"protein phosphatase 2C, putative, expressed"	Medtr7g138290.1	Protein phosphatase 2C-like; 	NA	NA	NA
PtpAffx.140360.1.A1_at	R	R	CV260680	CV260680	scaffold_18:6913987-6914262(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140504.1.A1_at	R	R	CV262161	CV262161	scaffold_14:4386038-4386553(-) (11)	NA	NA	NA	AT4G25225.1	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35736.2); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	AC233655_18.1	hypothetical protein AC233655.2 124799-122734 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.140509.1.A1_at	R	R	CV255559	CV255559	scaffold_1:5368289-5368659(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140516.1.A1_at	R	R	CV255296	CV255296	scaffold_8:12164806-12165073(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.140518.1.A1_at	R	R	CV255190	CV255190	NA	NA	NA	NA	AT2G27490.2	dephospho-CoA kinase family 	LOC_Os01g25880.1	"dephospho-CoA kinase, putative, expressed"	Medtr7g130270.1	Dephospho-CoA kinase 	NA	NA	NA
PtpAffx.140738.1.A1_at	R	R	CV246808	CV246808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141.1.S1_at	R	R	CF229884	CF229884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141043.1.A1_at	R	R	CV235090	CV235090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141052.1.A1_at	R	R	CV234597	CV234597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141156.1.A1_at	R	R	CV229785	CV229785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.141337.1.S1_at	R	R	AJ770159	AJ770159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1420.8.S1_at	R	R	CV259339	CV259339	NA	NA	Q0WQ57	Auxilin-related protein 2	AT1G75310.1	auxin-like 1 protein 	LOC_Os01g44310.2	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	NA	NA	NA
PtpAffx.14205.1.S1_at	R	R	CA823129	CA823129	scaffold_19:395008-395337(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142163.1.S1_at	R	R	BU823956	BU823956	NA	NA	NA	NA	AT2G34780.2	maternal effect embryo arrest 22 	NA	NA	AC147501_20.1	hypothetical protein AC147501.9 80184-71093 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.142167.1.S1_at	R	R	CK107399	CK107399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.14218.1.S1_at	R	R	CA824663	CA824663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142294.1.A1_at	R	R	BI122392	BI122392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142418.1.A1_s_at	R	R	CK097510	CK097510	NA	NA	Q8CFV9	Riboflavin kinase	AT4G21470.1	riboflavin kinase/FMN hydrolase 	LOC_Os10g14814.1	"ATFMN/FHY, putative"	Medtr4g125160.2	Haloacid dehalogenase-like hydrolase 	NA	NA	NA
PtpAffx.142422.1.A1_at	R	R	CK097384	CK097384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142438.1.A1_at	R	R	CK096971	CK096971	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142444.1.A1_at	R	R	CK096886	CK096886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142468.1.A1_at	R	R	CK095798	CK095798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142471.1.A1_at	R	R	CK095710	CK095710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142474.1.A1_at	R	R	CK095642	CK095642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142482.1.A1_at	R	R	CK095396	CK095396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142509.1.A1_at	R	R	CK094280	CK094280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142516.1.A1_at	R	R	CK094080	CK094080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142517.1.A1_at	R	R	CK094075	CK094075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142521.1.S1_at	R	R	BI122472	BI122472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142526.1.A1_at	R	R	CK093469	CK093469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142535.1.A1_at	R	R	CK093157	CK093157	NA	NA	NA	NA	NA	NA	NA	NA	Medtr7g127140.1	hypothetical protein 	NA	NA	NA
PtpAffx.142540.1.A1_at	R	R	CK092514	CK092514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142560.1.A1_at	R	R	CK091436	CK091436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142575.1.A1_at	R	R	CK091066	CK091066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142778.1.S1_at	R	R	DN495697	DN495697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.142816.1.S1_at	R	R	CF229877	CF229877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.143394.1.A1_at	R	R	DN486562	DN486562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.143705.3.S1_at	R	R	CV276918	CV276918	NA	NA	NA	NA	AT1G67230.1	little nuclei1 	LOC_Os02g48010.1	"nuclear matrix constituent protein 1-like, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.143763.1.S1_at	R	R	BU823950	BU823950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.143796.1.S1_at	R	R	DN496739	DN496739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.143911.1.S1_at	R	R	BU835005	BU835005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.143954.1.S1_at	R	R	CV256810	CV256810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.143985.1.S1_at	R	R	BU831419	BU831419	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144.1.S1_at	R	R	DN492835	DN492835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144084.1.S1_at	R	R	BU823182	BU823182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144157.1.S1_at	R	R	CK105988	CK105988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144236.1.S1_at	R	R	DN485488	DN485488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144289.1.A1_at	R	R	BU102206	BU102206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144500.1.S1_at	R	R	BI124380	BI124380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144775.1.S1_at	R	R	BU879025	BU879025	scaffold_4:16890782-16890943(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144822.1.S1_a_at	R	R	DN500556	DN500556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144822.1.S1_at	R	R	DN500556	DN500556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144836.1.S1_at	R	R	BU837641	BU837641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144884.1.S1_at	R	R	BU872322	BU872322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144896.1.S1_at	R	R	DN496810	DN496810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144930.1.S1_at	R	R	BU887947	BU887947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.144988.1.S1_at	R	R	BU898153	BU898153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145025.1.A1_at	R	R	DN491409	DN491409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145061.1.A1_at	R	R	DN490183	DN490183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145089.1.A1_at	R	R	DN488671	DN488671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145173.1.A1_at	R	R	DN484554	DN484554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145174.1.A1_at	R	R	DN484519	DN484519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145177.1.A1_at	R	R	DN484390	DN484390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145206.1.A1_a_at	R	R	BP936911	BP936911	NA	NA	O81971	Cytochrome P450 71D9	AT3G26160.1	"cytochrome P450, family 71, subfamily B, polypeptide 17 "	LOC_Os06g43420.1	"cytochrome P450, putative, expressed"	Medtr5g102410.1	Cytochrome P450 	NA	NA	NA
PtpAffx.145221.1.A1_s_at	R	R	BP936406	BP936406	NA	NA	Q9PLI5	Uncharacterized protein TC_0114	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145237.1.A1_at	R	R	BP936078	BP936078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145349.1.A1_at	R	R	BP931844	BP931844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.14538.2.A1_at	R	R	DN492364	DN492364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145384.1.A1_at	R	R	BP930397	BP930397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.14543.1.S1_at	R	R	DN492655	DN492655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.145853.1.S1_at	R	R	CK104434	CK104434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.14593.1.S1_at	R	R	DN496430	DN496430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146414.1.A1_at	R	R	CV278123	CV278123	NA	NA	NA	NA	AT5G06230.2	TRICHOME BIREFRINGENCE-LIKE 9 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146456.1.A1_at	R	R	CV276172	CV276172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146457.1.A1_at	R	R	CV276121	CV276121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146477.1.A1_at	R	R	CV275441	CV275441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146498.1.A1_at	R	R	CV274887	CV274887	NA	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os04g28180.1	"ribosomal protein, putative, expressed"	Medtr8g012690.1	"Plant EC metallothionein-like protein, family 15; Ribosomal protein S8E "	NA	NA	NA
PtpAffx.146514.1.A1_at	R	R	CV274174	CV274174	NA	NA	P62246	40S ribosomal protein S15a	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os07g10720.2	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	NA	NA	NA
PtpAffx.146524.1.A1_at	R	R	CV273875	CV273875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146528.1.A1_at	R	R	CV273658	CV273658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146585.1.A1_at	R	R	CV270890	CV270890	NA	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146596.1.A1_at	R	R	CV270421	CV270421	NA	NA	Q9HFR7	60S ribosomal protein L36	AT3G53740.4	Ribosomal protein L36e family protein 	LOC_Os05g38520.4	"60S ribosomal protein L36-2, putative, expressed"	Medtr1g126960.2	Ribosomal protein L36E 	NA	NA	NA
PtpAffx.146611.1.A1_at	R	R	CV269912	CV269912	scaffold_18:14156779-14157231(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146633.1.A1_at	R	R	CV268848	CV268848	NA	NA	NA	NA	AT2G34860.2	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os08g36140.1	expressed protein	Medtr1g146480.1	"DnaJ-like zinc-finger protein, related "	NA	NA	NA
PtpAffx.146715.1.A1_at	R	R	CV265148	CV265148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.14672.3.S1_at	R	R	BU893296	BU893296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146768.1.A1_a_at	R	R	CV269224	CV269224	scaffold_8:4737653-4737927(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146801.1.A1_at	R	R	CV261800	CV261800	NA	NA	NA	NA	AT1G03160.1	FZO-like 	LOC_Os05g32390.1	"FZL, putative, expressed"	Medtr1g086430.1	Dynamin; Thiamine monophosphate synthase 	NA	NA	NA
PtpAffx.146826.1.A1_at	R	R	CV260931	CV260931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146878.1.A1_at	R	R	CV258692	CV258692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146955.2.A1_a_at	R	R	CV256581	CV256581	scaffold_17:6977319-6977456(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.146955.2.A1_at	R	R	CV256581	CV256581	scaffold_17:6999353-6999684(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147032.1.A1_at	R	R	CV254129	CV254129	scaffold_15:862166-862493(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147045.1.A1_a_at	R	R	CV253730	CV253730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147045.1.A1_at	R	R	CV253730	CV253730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147056.1.A1_at	R	R	CV253094	CV253094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147077.1.A1_at	R	R	CV252719	CV252719	NA	NA	P31679	Putative metabolite transport protein yaaU	AT5G27350.1	Major facilitator superfamily protein 	LOC_Os03g24860.1	"transporter family protein, putative, expressed"	Medtr2g025780.1	Sugar transporter; Major facilitator superfamily 	NA	NA	NA
PtpAffx.147107.1.A1_at	R	R	CV250665	CV250665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147169.1.A1_at	R	R	CV247683	CV247683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147196.1.A1_at	R	R	CV246041	CV246041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147218.2.A1_a_at	R	R	CV272362	CV272362	scaffold_1:6086765-6087003(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.14727.1.S1_at	R	R	BU884149	BU884149	scaffold_6:22707009-22707415(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.14728.1.A1_at	R	R	DN487814	DN487814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147371.1.A1_at	R	R	CV240158	CV240158	NA	NA	Q16RI1	Protein OPI10 homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147393.1.A1_at	R	R	CV239268	CV239268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147551.1.A1_at	R	R	CV233861	CV233861	scaffold_19:2332094-2332548(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.14756.1.S1_at	R	R	BU882844	BU882844	scaffold_1:40449720-40449871(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147571.3.A1_at	R	R	CV273460	CV273460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147587.1.A1_at	R	R	CV232099	CV232099	scaffold_9:12779698-12780038(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147663.1.A1_at	R	R	CV229381	CV229381	scaffold_19:362588-362812(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.147932.1.S1_at	R	R	AJ774413	AJ774413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148282.1.S1_at	R	R	AJ779144	AJ779144	NA	NA	Q6VAF9	Tubulin alpha-4 chain	AT1G50010.1	tubulin alpha-2 chain 	LOC_Os11g14220.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	NA	NA	NA
PtpAffx.14833.1.S1_at	R	R	BU822861	BU822861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148422.1.S1_at	R	R	BP922841	BP922841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148698.1.A1_at	R	R	DN484618	DN484618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148714.1.S1_at	R	R	BU824592	BU824592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148731.1.S1_at	R	R	CK107862	CK107862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148762.1.S1_at	R	R	CK106770	CK106770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148811.1.S1_at	R	R	BU832342	BU832342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148817.1.S1_at	R	R	BI125776	BI125776	NA	NA	Q8LFH5	Protein RUPTURED POLLEN GRAIN 1	AT4G15920.1	Nodulin MtN3 family protein 	LOC_Os03g22200.1	"nodulin MtN3 family protein, putative, expressed"	Medtr5g076470.1	MtN3 and saliva related transmembrane protein 	NA	NA	NA
PtpAffx.148950.1.A1_at	R	R	CK097922	CK097922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.148966.1.A1_at	R	R	CK097403	CK097403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149015.1.A1_at	R	R	CK095413	CK095413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149022.1.A1_at	R	R	CK095057	CK095057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149045.1.A1_at	R	R	CK094203	CK094203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149046.1.A1_at	R	R	CK094128	CK094128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149050.1.A1_at	R	R	CK093966	CK093966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149061.1.A1_at	R	R	CK093011	CK093011	NA	NA	P33629	Tubulin alpha chain	AT1G64740.1	alpha-1 tubulin 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	NA	NA	NA
PtpAffx.149064.1.A1_at	R	R	CK092648	CK092648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149071.1.S1_at	R	R	CK091967	CK091967	NA	NA	NA	NA	AT1G73140.1	Plant protein of unknown function (DUF828) 	LOC_Os05g28630.1	"leaf senescence related protein, putative, expressed"	Medtr3g094070.1	"Protein of unknown function DUF231, plant "	NA	NA	NA
PtpAffx.149077.1.A1_at	R	R	CK091652	CK091652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149128.1.A1_at	R	R	CK089642	CK089642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149130.1.A1_at	R	R	CK089508	CK089508	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149134.1.A1_at	R	R	CK089264	CK089264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.14916.1.A1_at	R	R	DN491695	DN491695	scaffold_6:24154326-24154811(+) (11)	NA	Q8L493	"Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic"	AT5G57850.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os02g17330.1	"aminotransferase domain containing protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.149231.2.A1_at	R	R	CV267180	CV267180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149264.1.S1_at	R	R	CF231887	CF231887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149802.1.S1_s_at	R	R	BU885093	BU885093	NA	NA	A4GYS0	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic"	ATCG00500.1	acetyl-CoA carboxylase carboxyl transferase subunit beta 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149843.1.S1_at	R	R	BU894284	BU894284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.149991.1.A1_s_at	R	R	CA932149	CA932149	NA	NA	P83304	Mannose/glucose-specific lectin (Fragment)	NA	NA	LOC_Os04g30040.2	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	NA	NA	NA
PtpAffx.150180.1.S1_at	R	R	DN491812	DN491812	scaffold_16:9699224-9699563(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.150260.1.S1_at	R	R	BU872088	BU872088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15038.1.A1_at	R	R	CV266349	CV266349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15038.3.S1_at	R	R	AJ774511	AJ774511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.150631.1.S1_at	R	R	BU892505	BU892505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.150698.1.S1_at	R	R	BI128041	BI128041	NA	NA	Q8RUN2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1	AT2G28305.1	Putative lysine decarboxylase family protein 	LOC_Os04g43840.1	"possible lysine decarboxylase domain containing protein, expressed"	AC233683_4.1	Conserved hypothetical protein 730 AC233683.2 27372-22176 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.1507.1.S1_at	R	R	CK317874	CK317874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.150732.1.S1_at	R	R	DN486400	DN486400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.150750.1.S1_at	R	R	DN495423	DN495423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151040.1.S1_at	R	R	CK094281	CK094281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15123.3.S1_at	R	R	CK094311	CK094311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151270.1.S1_at	R	R	DN492841	DN492841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151386.1.S1_at	R	R	DN498182	DN498182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151397.1.S1_at	R	R	BU886822	BU886822	NA	NA	NA	NA	AT4G28760.2	Protein of unknown function (DUF3741) 	LOC_Os03g04990.1	expressed protein	Medtr7g117880.1	hypothetical protein 	NA	NA	NA
PtpAffx.151399.1.S1_at	R	R	BU874132	BU874132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151405.1.S1_at	R	R	BU872434	BU872434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151413.1.S1_at	R	R	DN487165	DN487165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151512.1.A1_at	R	R	DN493203	DN493203	NA	NA	Q99315	Transposon Ty3-G Gag-Pol polyprotein	NA	NA	LOC_Os05g17830.1	"retrotransposon protein, putative, unclassified"	AC234026_1.1	RNA-directed DNA polymerase (Reverse transcriptase) AC234026.1 2154-4412 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.151520.1.A1_a_at	R	R	CV258234	CV258234	scaffold_6:17746812-17746919(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151541.1.A1_at	R	R	DN492061	DN492061	scaffold_3:16331514-16331725(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151542.1.A1_at	R	R	DN492016	DN492016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151561.1.A1_at	R	R	DN491537	DN491537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151616.1.A1_at	R	R	DN488886	DN488886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151636.1.A1_at	R	R	DN487621	DN487621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151640.1.A1_at	R	R	DN487261	DN487261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151652.1.A1_at	R	R	DN486912	DN486912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151656.1.A1_at	R	R	DN486771	DN486771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151662.1.A1_at	R	R	DN486498	DN486498	NA	NA	Q8NBR6	Protein FAM63B	AT4G11860.1	Protein of unknown function (DUF544)      	LOC_Os06g49800.1	"ubiquitin interaction motif family protein, expressed"	Medtr5g011220.1	Protein of unknown function DUF544 	NA	NA	NA
PtpAffx.151675.1.A1_at	R	R	DN486130	DN486130	NA	NA	Q4P6N7	RuvB-like helicase 2	AT5G67630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g08770.1	"ruvB-like 2, putative, expressed"	Medtr3g080810.2	"TIP49, C-terminal "	NA	NA	NA
PtpAffx.151678.1.A1_at	R	R	DN486038	DN486038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151683.1.A1_at	R	R	DN485903	DN485903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151710.1.A1_at	R	R	DN484992	DN484992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151723.1.A1_at	R	R	DN484408	DN484408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151744.1.S1_at	R	R	DN483631	DN483631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.151848.1.A1_at	R	R	BP933792	BP933792	NA	NA	NA	NA	AT1G73180.2	Eukaryotic translation initiation factor eIF2A family protein 	NA	NA	Medtr4g128590.1	Fumarate lyase; WD40-like; 	NA	NA	NA
PtpAffx.151900.1.A1_at	R	R	BP932137	BP932137	NA	NA	NA	NA	AT3G15090.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os01g54940.1	"dehydrogenase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.151948.1.A1_at	R	R	BP935203	BP935203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.152017.1.S1_at	R	R	CF231899	CF231899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.152090.1.S1_at	R	R	BP924997	BP924997	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15244.1.S1_at	R	R	BU823926	BU823926	scaffold_5:963275-963448(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.152736.1.S1_at	R	R	CX169611	CX169611	scaffold_17:8605103-8605600(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.152852.1.A1_at	R	R	CV281787	CV281787	NA	NA	Q8GVE8	Phosphoenolpyruvate carboxylase 4	AT1G68750.1	phosphoenolpyruvate carboxylase 4 	LOC_Os01g02050.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr1g118320.1	Phosphoenolpyruvate carboxylase; AAA ATPase; 	NA	NA	NA
PtpAffx.152854.1.A1_at	R	R	CV281775	CV281775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.152888.1.A1_at	R	R	CV280009	CV280009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.152922.1.A1_at	R	R	CV278271	CV278271	NA	NA	Q41387	"Photosystem II reaction center W protein, chloroplastic"	AT2G30570.1	photosystem II reaction center W 	LOC_Os05g43310.1	"photosystem II reaction center W protein, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.152971.1.A1_at	R	R	CV275846	CV275846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.152973.1.A1_at	R	R	CV275674	CV275674	NA	NA	Q9UTI5	Vacuolar protein sorting-associated protein 29	AT3G47810.3	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os02g16550.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr3g109790.1	Protein of unknown function UPF0025; Metallophosphoesterase 	NA	NA	NA
PtpAffx.152991.1.A1_at	R	R	CV274664	CV274664	scaffold_13:3731501-3732244(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153003.1.A1_at	R	R	CV274098	CV274098	NA	NA	NA	NA	AT3G53980.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g06780.1	"LTPL104 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	NA	NA	NA
PtpAffx.153005.1.A1_at	R	R	CV274030	CV274030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153006.1.A1_at	R	R	CV274020	CV274020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153007.1.A1_at	R	R	CV273965	CV273965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153016.1.A1_at	R	R	CV273459	CV273459	NA	NA	P23403	40S ribosomal protein S20	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os06g04290.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	NA	NA	NA
PtpAffx.153022.1.A1_at	R	R	CV273331	CV273331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153036.1.A1_at	R	R	CV272827	CV272827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153112.1.A1_at	R	R	CV269434	CV269434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153118.1.A1_at	R	R	CV269269	CV269269	scaffold_8:2670539-2670699(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153272.1.A1_at	R	R	CV263744	CV263744	scaffold_1:20595944-20596024(-) (10)	NA	NA	NA	AT2G27900.2	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os10g39910.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.153289.1.A1_at	R	R	CV263398	CV263398	scaffold_1:24006670-24006987(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153318.1.A1_at	R	R	CV262080	CV262080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153347.1.A1_at	R	R	CV262792	CV262792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153349.1.A1_at	R	R	CV260900	CV260900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153360.1.A1_at	R	R	CV260385	CV260385	scaffold_8:4465744-4466151(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153366.1.A1_at	R	R	CV260109	CV260109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153410.1.A1_at	R	R	CV258412	CV258412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153418.1.A1_at	R	R	CV258125	CV258125	scaffold_14:4859350-4859424(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15351.2.S1_at	R	R	CK096303	CK096303	NA	NA	NA	NA	AT3G16170.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g55590.1	"AMP-binding enzyme, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.153517.1.A1_at	R	R	CV254504	CV254504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153519.1.A1_at	R	R	CV254425	CV254425	scaffold_2:14763217-14763321(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153523.1.A1_at	R	R	CV254345	CV254345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153524.1.A1_at	R	R	CV254303	CV254303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153630.1.A1_at	R	R	CV249731	CV249731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153782.1.A1_at	R	R	CV243154	CV243154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153794.1.A1_at	R	R	CV242349	CV242349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153823.1.A1_at	R	R	CV241274	CV241274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153846.1.A1_at	R	R	CV240344	CV240344	NA	NA	Q330K2	"UPF0551 protein C8orf38, mitochondrial"	AT1G62730.1	Terpenoid synthases superfamily protein 	LOC_Os06g01470.1	"AGAP000326-PA, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.153851.1.A1_at	R	R	CV240030	CV240030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.153984.1.A1_at	R	R	CV234161	CV234161	NA	NA	Q08699	40S ribosomal protein S14	AT3G11510.1	Ribosomal protein S11 family protein 	LOC_Os04g33750.1	"ribosomal protein, putative, expressed"	Medtr4g165800.1	Ribosomal protein S11 	NA	NA	NA
PtpAffx.154338.1.S1_at	R	R	AJ779532	AJ779532	NA	NA	Q9LJM4	Receptor-like protein kinase HAIKU2	AT1G09970.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os12g43640.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	NA	NA	NA
PtpAffx.154690.2.S1_at	R	R	BU893573	BU893573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15472.1.S1_at	R	R	BU811241	BU811241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.154775.1.S1_at	R	R	CN524171	CN524171	NA	NA	Q9SCT4	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2	AT3G51740.1	inflorescence meristem receptor-like kinase 2 	LOC_Os11g01620.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr4g011440.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.155087.1.A1_at	R	R	DN486299	DN486299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155114.1.S1_at	R	R	DN484376	DN484376	NA	NA	O14880	Microsomal glutathione S-transferase 3	AT1G65820.2	"microsomal glutathione s-transferase, putative "	LOC_Os03g50130.1	"microsomal glutathione S-transferase 3, putative, expressed"	Medtr5g084400.1	Membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG) 	NA	NA	NA
PtpAffx.155237.1.S1_at	R	R	CK104548	CK104548	NA	NA	P08525	Cytochrome b-c1 complex subunit 8	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155392.1.A1_at	R	R	CK097431	CK097431	NA	NA	NA	NA	AT2G32260.1	phosphorylcholine cytidylyltransferase 	LOC_Os02g07720.2	"cytidylyltransferase domain containing protein, expressed"	Medtr4g089770.1	Cytidylyltransferase 	NA	NA	NA
PtpAffx.155419.1.A1_at	R	R	CK096565	CK096565	NA	NA	Q40285	Anthocyanidin 3-O-glucosyltransferase 2 (Fragment)	AT2G29730.1	UDP-glucosyl transferase 71D1 	NA	NA	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
PtpAffx.155456.1.A1_at	R	R	CK095349	CK095349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155464.1.A1_at	R	R	CK095153	CK095153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155494.1.A1_at	R	R	CK094207	CK094207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155495.1.A1_at	R	R	CK094193	CK094193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155546.1.A1_at	R	R	CK091601	CK091601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155559.1.A1_at	R	R	CK091093	CK091093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155571.1.A1_at	R	R	CK090596	CK090596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155584.1.A1_at	R	R	CK089949	CK089949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155586.1.A1_at	R	R	CK089879	CK089879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.155601.1.A1_at	R	R	CK088446	CK088446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.156353.1.S1_at	R	R	DN486579	DN486579	NA	NA	Q40392	TMV resistance protein N	AT4G16860.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr5g038750.1	TIR 	NA	NA	NA
PtpAffx.15666.1.S1_at	R	R	CK095367	CK095367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15671.1.S1_at	R	R	CK095306	CK095306	NA	NA	Q9Y297	F-box/WD repeat-containing protein 1A	AT1G61210.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g35200.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.15674.1.S1_at	R	R	BI126540	BI126540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.156895.1.S1_at	R	R	BU835140	BU835140	NA	NA	NA	NA	AT4G22120.6	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	NA
PtpAffx.15693.1.S1_at	R	R	CK104899	CK104899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157113.1.S1_at	R	R	BU821164	BU821164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15724.1.S1_at	R	R	CK094436	CK094436	NA	NA	P05754	40S ribosomal protein S8	AT5G20290.1	Ribosomal protein S8e family protein 	LOC_Os02g28810.2	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	NA
PtpAffx.15730.1.S1_at	R	R	BI123524	BI123524	NA	NA	Q12672	60S ribosomal protein L21-B	AT1G57860.1	Translation protein SH3-like family protein 	LOC_Os10g32820.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.15737.1.S1_at	R	R	CK104169	CK104169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15738.1.S1_at	R	R	BI123117	BI123117	NA	NA	O59675	40S ribosomal protein S9-B	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	NA	NA
PtpAffx.157449.1.S1_at	R	R	CK104324	CK104324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157456.1.S1_at	R	R	CK094288	CK094288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15757.1.S1_at	R	R	CK093845	CK093845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157582.1.S1_at	R	R	CF236034	CF236034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157608.1.S1_at	R	R	CK089099	CK089099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15766.2.S1_at	R	R	CK104516	CK104516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157662.1.S1_at	R	R	U08097.1	U08097.1	NA	NA	P36214	"Superoxide dismutase [Cu-Zn], chloroplastic"	AT1G08830.2	copper/zinc superoxide dismutase 1 	LOC_Os03g22810.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr4g076170.1	"Superoxide dismutase, copper/zinc binding "	NA	NA	NA
PtpAffx.157823.1.S1_at	R	R	BU872413	BU872413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157824.1.S1_at	R	R	BU872374	BU872374	NA	NA	P56525	"ATP synthase subunit delta, mitochondrial"	AT5G47030.1	"ATPase, F1 complex, delta/epsilon subunit "	LOC_Os07g31300.1	"ATP synthase delta chain, mitochondrial precursor, putative, expressed"	Medtr8g008620.1	"H+-transporting two-sector ATPase, delta/epsilon subunit "	NA	NA	NA
PtpAffx.157838.1.S1_at	R	R	DN496146	DN496146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157838.2.S1_a_at	R	R	DN486572	DN486572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.157838.2.S1_at	R	R	DN486572	DN486572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.158018.1.A1_at	R	R	DN490317	DN490317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.158019.1.A1_at	R	R	DN490279	DN490279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.158031.1.A1_at	R	R	DN489539	DN489539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.158038.1.A1_at	R	R	DN489332	DN489332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.158102.1.A1_at	R	R	DN486037	DN486037	NA	NA	Q5R658	Vacuolar protein sorting-associated protein 4B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.158107.2.A1_at	R	R	DN485671	DN485671	NA	NA	Q9FLQ4	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial"	AT5G55070.1	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.1	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr2g006710.2	"Dihydrolipoamide acetyltransferase, long form "	NA	NA	NA
PtpAffx.158107.3.S1_at	R	R	CK088568	CK088568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.158151.1.S1_at	R	R	DN483890	DN483890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.158203.1.A1_at	R	R	BP935240	BP935240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.158565.1.S1_at	R	R	CX659067	CX659067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.158716.2.S1_at	R	R	CV274377	CV274377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159229.1.A1_at	R	R	CV282301	CV282301	NA	NA	Q9SSU8	"Phytoene synthase, chloroplastic"	AT5G17230.3	PHYTOENE SYNTHASE 	LOC_Os06g51290.3	"phytoene synthase, chloroplast precursor, putative, expressed"	Medtr5g097900.1	Squalene/phytoene synthase 	NA	NA	NA
PtpAffx.159235.1.A1_at	R	R	CV278905	CV278905	scaffold_15:148877-149571(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159279.1.A1_at	R	R	CV279889	CV279889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159319.1.A1_at	R	R	CV277748	CV277748	NA	NA	Q40519	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os08g10020.2	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	NA	NA	NA
PtpAffx.159363.1.A1_at	R	R	CV276021	CV276021	NA	NA	O59682	Serine palmitoyltransferase 1	AT4G36480.2	long-chain base1 	LOC_Os10g11200.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	NA	NA	NA
PtpAffx.159365.1.A1_at	R	R	CV275908	CV275908	NA	NA	P62282	40S ribosomal protein S11	AT4G30800.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g52361.1	"ribosomal protein S17, putative, expressed"	Medtr8g122510.1	Ribosomal protein S17 	NA	NA	NA
PtpAffx.159371.1.A1_at	R	R	CV275686	CV275686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159375.1.A1_at	R	R	CV275536	CV275536	NA	NA	NA	NA	AT1G14930.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	NA	NA	Medtr1g034930.1	Bet v I allergen 	NA	NA	NA
PtpAffx.159386.1.A1_at	R	R	CV275040	CV275040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159389.1.A1_at	R	R	CV274838	CV274838	scaffold_8:1577762-1578025(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159409.1.A1_at	R	R	CV274089	CV274089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159481.1.A1_at	R	R	CV270728	CV270728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159547.1.A1_at	R	R	CV268663	CV268663	NA	NA	P49098	Cytochrome b5	AT2G32720.1	cytochrome B5 isoform B 	LOC_Os05g01820.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr4g023560.1	Cytochrome b5 	NA	NA	NA
PtpAffx.159570.1.A1_at	R	R	CV268285	CV268285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159581.1.A1_at	R	R	CV266917	CV266917	NA	NA	O82201	AP-4 complex subunit sigma	AT2G19790.1	SNARE-like superfamily protein 	LOC_Os08g30480.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr7g118420.1	Longin-like 	NA	NA	NA
PtpAffx.159603.1.A1_at	R	R	CV262151	CV262151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159720.1.A1_at	R	R	CV268538	CV268538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159755.1.A1_at	R	R	CV260397	CV260397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159758.1.A1_at	R	R	CV260202	CV260202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159772.1.A1_at	R	R	CV259608	CV259608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159790.1.A1_at	R	R	CV258860	CV258860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.15982.1.A1_at	R	R	AY302062.1	AY302062.1	NA	NA	Q6YXH8	Cyclin-D4-1	AT5G10440.1	cyclin d4;2 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g148920.1	"Cyclin, N-terminal; "	NA	NA	NA
PtpAffx.15982.1.S1_at	R	R	AY302062.1	AY302062.1	NA	NA	Q6YXH8	Cyclin-D4-1	AT5G10440.1	cyclin d4;2 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g148920.1	"Cyclin, N-terminal; "	NA	NA	NA
PtpAffx.159846.1.A1_at	R	R	CV257434	CV257434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159855.1.A1_at	R	R	CV257289	CV257289	scaffold_1:45946402-45946659(-) (11)//scaffold_19:13999263-13999520(-) (11)	NA	NA	NA	NA	NA	LOC_Os10g39530.1	"retrotransposon protein, putative, unclassified"	Medtr1g140330.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.159865.1.A1_at	R	R	CV256854	CV256854	scaffold_4:20677314-20677834(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159867.1.A1_at	R	R	CV256777	CV256777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159881.1.A1_at	R	R	CV256460	CV256460	scaffold_5:1297758-1298274(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159884.1.A1_at	R	R	CV256383	CV256383	scaffold_14:4872034-4872251(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159970.1.A1_at	R	R	CV253279	CV253279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159971.1.A1_at	R	R	CV256343	CV256343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.159985.1.A1_at	R	R	CV252399	CV252399	NA	NA	P63389	Uncharacterized ABC transporter ATP-binding protein yheS	AT1G64550.1	general control non-repressible 3 	LOC_Os09g39910.3	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g109230.1	AAA ATPase 	NA	NA	NA
PtpAffx.159987.1.A1_at	R	R	CV252421	CV252421	NA	NA	P77561	Protein ydeP	NA	NA	NA	NA	AC148471_42.1	"Oxidoreductase, N-terminal; Molydopterin dinucleotide-binding region AC148471.15 85747-83648 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.159990.1.A1_at	R	R	CV252711	CV252711	NA	NA	Q3YVN8	ATP synthase subunit alpha	AT2G07698.1	"ATPase, F1 complex, alpha subunit protein "	LOC_Os09g08910.1	"ATP synthase, putative, expressed"	Medtr1g006540.1	ATPase FliI/YscN 	NA	NA	NA
PtpAffx.160.1.A1_at	R	R	CV271753	CV271753	scaffold_13:1197359-1197613(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16001.1.A1_at	R	R	DN493458	DN493458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16003.1.S1_at	R	R	DN503433	DN503433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160058.1.A1_at	R	R	CV230119	CV230119	NA	NA	NA	NA	AT4G00905.1	NC domain-containing protein-related 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160086.1.A1_at	R	R	AJ779963	AJ779963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1601.20.S1_at	R	R	CA825867	CA825867	NA	NA	Q9PLI5	Uncharacterized protein TC_0114	NA	NA	NA	NA	Medtr5g088220.1	", putative "	NA	NA	NA
PtpAffx.1601.23.S1_at	R	R	CK094988	CK094988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1601.27.S1_at	R	R	CK093780	CK093780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160207.1.A1_at	R	R	CV242637	CV242637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160258.1.A1_at	R	R	CV240990	CV240990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160356.1.A1_at	R	R	CV237154	CV237154	NA	NA	NA	NA	AT5G56750.1	N-MYC downregulated-like 1 	LOC_Os05g10740.2	"pollen-specific protein SF21, putative, expressed"	Medtr1g096280.1	Ndr 	NA	NA	NA
PtpAffx.160390.3.A1_at	R	R	CV271478	CV271478	NA	NA	Q39110	Gibberellin 20 oxidase 1	AT5G24530.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g03034.4	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.160409.1.A1_at	R	R	CV235012	CV235012	scaffold_1:12042195-12042368(-) (11)	NA	NA	NA	AT4G16970.1	Protein kinase superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16042.1.S1_at	R	R	BU877563	BU877563	scaffold_8:9144130-9144220(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160443.2.A1_at	R	R	CV275859	CV275859	NA	NA	NA	NA	NA	NA	LOC_Os04g36660.1	"calmodulin binding protein, putative, expressed"	Medtr4g125270.1	Calmodulin binding protein-like 	NA	NA	NA
PtpAffx.160537.1.A1_at	R	R	CV229601	CV229601	NA	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	NA	NA	Medtr8g132820.1	Dimeric alpha-beta barrel 	NA	NA	NA
PtpAffx.160702.1.S1_at	R	R	BU896394	BU896394	NA	NA	NA	NA	NA	NA	LOC_Os02g55520.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.16075.1.S1_at	R	R	DN490298	DN490298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.160950.1.S1_at	R	R	CK104443	CK104443	NA	NA	NA	NA	AT4G10180.1	light-mediated development protein 1 / deetiolated1 (DET1) 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16096.1.S1_at	R	R	BU830194	BU830194	scaffold_17:6656712-6656796(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161126.1.S1_at	R	R	CF228999	CF228999	scaffold_13:487515-488078(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16159.1.S1_at	R	R	DN496713	DN496713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161670.1.S1_at	R	R	CK105644	CK105644	NA	NA	NA	NA	AT3G27670.1	ARM repeat superfamily protein 	LOC_Os01g07490.1	"RST1, putative, expressed"	Medtr6g005020.1	"RST1, related "	NA	NA	NA
PtpAffx.161833.1.A1_at	R	R	CK097391	CK097391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161858.1.A1_at	R	R	CK096577	CK096577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161867.1.A1_at	R	R	CK096153	CK096153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161872.1.A1_at	R	R	CK096060	CK096060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161890.1.A1_at	R	R	CK095446	CK095446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161893.1.A1_at	R	R	CK095352	CK095352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161895.1.A1_at	R	R	CK095314	CK095314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161897.1.A1_at	R	R	CK095280	CK095280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.161997.1.A1_at	R	R	CK090562	CK090562	NA	NA	P52780	Glutaminyl-tRNA synthetase	AT1G25350.2	"glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative "	LOC_Os01g09000.1	"glutaminyl-tRNA synthetase, putative, expressed"	Medtr1g140680.1	"Glutamyl-tRNA synthetase archae/euk cytosolic; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 2; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 1 "	NA	NA	NA
PtpAffx.16201.1.A1_at	R	R	DN485933	DN485933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.162017.1.A1_at	R	R	CK089086	CK089086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.162083.1.S1_at	R	R	CF234791	CF234791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.162325.1.S1_at	R	R	CA823879	CA823879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16236.1.A1_at	R	R	DN484570	DN484570	NA	NA	Q9DCR2	AP-3 complex subunit sigma-1	AT3G50860.1	Clathrin adaptor complex small chain family protein 	LOC_Os03g12710.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr8g093300.1	Longin-like 	NA	NA	NA
PtpAffx.162388.1.S1_at	R	R	CX186725	CX186725	NA	NA	Q14FG0	Photosystem II reaction center protein Z	ATCG00300.1	YCF9 	LOC_Os04g16876.1	"photosystem II reaction center protein Z, putative"	Medtr8g065570.1	Photosystem II protein PsbZ 	NA	NA	NA
PtpAffx.16239.1.A1_at	R	R	DN484499	DN484499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16252.1.A1_at	R	R	DN493286	DN493286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16254.1.A1_at	R	R	DN493273	DN493273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16270.1.A1_at	R	R	DN492358	DN492358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.163106.1.S1_at	R	R	BU873754	BU873754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16317.2.S1_at	R	R	CV266570	CV266570	NA	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16325.1.A1_at	R	R	DN490646	DN490646	NA	NA	NA	NA	NA	NA	LOC_Os12g15400.1	"CXE carboxylesterase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.16326.1.A1_at	R	R	DN490627	DN490627	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16327.1.A1_at	R	R	DN490503	DN490503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16328.1.A1_at	R	R	DN490389	DN490389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.163284.1.S1_at	R	R	BU837933	BU837933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.163330.1.S1_at	R	R	CA824947	CA824947	scaffold_7:14737726-14737974(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16347.1.A1_at	R	R	DN489221	DN489221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.163496.1.S1_at	R	R	CK106890	CK106890	scaffold_10:16822384-16822721(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.163512.1.S1_at	R	R	CK106598	CK106598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.163561.2.S1_at	R	R	BU869595	BU869595	NA	NA	Q39692	"Beta-fructofuranosidase, insoluble isoenzyme 2"	AT3G52600.1	cell wall invertase 2 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr7g127810.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	NA	NA	NA
PtpAffx.16357.1.A1_at	R	R	DN488377	DN488377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16366.1.A1_at	R	R	DN487729	DN487729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16369.1.S1_at	R	R	DN487663	DN487663	NA	NA	P49108	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	NA	NA	NA
PtpAffx.16371.3.A1_at	R	R	CV267160	CV267160	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g021420.1	TIR; NB-ARC; AAA ATPase 	NA	NA	NA
PtpAffx.16372.1.S1_at	R	R	BU872049	BU872049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16387.1.S1_at	R	R	BU892635	BU892635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16389.1.A1_at	R	R	DN486770	DN486770	NA	NA	Q9LYC8	Monothiol glutaredoxin-S6	AT3G62930.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g129950.1	Thioredoxin fold 	NA	NA	NA
PtpAffx.16392.1.A1_at	R	R	DN486752	DN486752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16406.1.S1_at	R	R	DN495932	DN495932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16411.1.A1_at	R	R	DN486039	DN486039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16418.1.S1_at	R	R	DN495227	DN495227	NA	NA	P17477	60S acidic ribosomal protein P1-alpha 3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16422.1.A1_at	R	R	DN485594	DN485594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16436.1.S1_at	R	R	BU828689	BU828689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16443.1.S1_at	R	R	CK108817	CK108817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16535.1.A1_at	R	R	BP934748	BP934748	scaffold_4:19357778-19358052(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16548.3.A1_at	R	R	BP934069	BP934069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16869.2.S1_at	R	R	BU861519	BU861519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16918.1.S1_at	R	R	DN497309	DN497309	NA	NA	O80961	MLO-like protein 12	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr4g108950.1	Mlo-related protein 	NA	NA	NA
PtpAffx.16980.1.A1_at	R	R	CK095992	CK095992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.16983.2.S1_at	R	R	CK094689	CK094689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17106.2.S1_at	R	R	BU890943	BU890943	NA	NA	NA	NA	AT5G65260.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1729.3.S1_at	R	R	BP934037	BP934037	NA	NA	Q40459	"Oxygen-evolving enhancer protein 1, chloroplastic"	AT5G66570.1	PS II oxygen-evolving complex 1 	LOC_Os01g31690.1	"oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed"	Medtr5g018670.1	Photosystem II manganese-stabilizing protein PsbO 	NA	NA	NA
PtpAffx.173.1.A1_at	R	R	DN490612	DN490612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17548.1.A1_at	R	R	CV283201	CV283201	scaffold_2:11894376-11894669(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g084820.1	"Ripening-related protein 1 precursor, putative "	NA	NA	NA
PtpAffx.17592.1.A1_at	R	R	CV280792	CV280792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17597.1.A1_at	R	R	CV280559	CV280559	NA	NA	Q67YC9	Uncharacterized protein At4g14100	AT3G23760.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os07g09150.1	expressed protein	Medtr3g151440.1	hypothetical protein 	NA	NA	NA
PtpAffx.17600.1.A1_at	R	R	CV280503	CV280503	NA	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	NA	NA	NA
PtpAffx.17611.1.A1_at	R	R	CV279836	CV279836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17653.6.A1_at	R	R	CV276674	CV276674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17659.1.A1_at	R	R	CV277842	CV277842	NA	NA	Q9ZTX8	Auxin response factor 6	AT1G30330.2	auxin response factor 6 	LOC_Os06g46410.2	"auxin response factor, putative, expressed"	Medtr2g022250.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	NA	NA	NA
PtpAffx.17669.1.A1_at	R	R	CV277262	CV277262	scaffold_9:11941293-11941585(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1767.3.A1_a_at	R	R	CV266427	CV266427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1767.3.A1_at	R	R	CV266427	CV266427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17681.1.A1_at	R	R	CV276890	CV276890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1770.12.A1_at	R	R	DN484483	DN484483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17701.1.A1_at	R	R	CV276062	CV276062	NA	NA	NA	NA	AT3G13310.1	Chaperone DnaJ-domain superfamily protein 	NA	NA	CU013523_26.1	"Heat shock protein DnaJ, N-terminal CU013523.3 104000-104817 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.17710.1.A1_at	R	R	CV275787	CV275787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17713.1.A1_at	R	R	CV267000	CV267000	scaffold_5:13066838-13067182(+) (9)	NA	Q54Z26	Serine hydroxymethyltransferase 1	AT1G36370.1	serine hydroxymethyltransferase 7 	LOC_Os01g65410.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr2g006550.1	Glycine hydroxymethyltransferase; 	NA	NA	NA
PtpAffx.17721.1.A1_at	R	R	CV275236	CV275236	NA	NA	Q7ZWJ4	60S ribosomal protein L18a	AT1G29970.2	60S ribosomal protein L18A-1 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	NA	NA	NA
PtpAffx.17722.1.A1_at	R	R	CV275228	CV275228	NA	NA	P62981	Ubiquitin-40S ribosomal protein S27a	AT3G62250.1	ubiquitin 5 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr5g035270.1	Ubiquitin; Ribosomal protein S27a 	NA	NA	NA
PtpAffx.17730.1.A1_at	R	R	CV274938	CV274938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17739.1.A1_at	R	R	CV274638	CV274638	NA	NA	P54654	Adenylyl cyclase-associated protein	AT4G34490.1	cyclase associated protein 1 	LOC_Os08g34780.1	"adenylyl cyclase-associated protein, putative, expressed"	Medtr4g095480.1	Cyclase-associated protein; 	NA	NA	NA
PtpAffx.17757.3.S1_at	R	R	BP932586	BP932586	NA	NA	NA	NA	AT3G02420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g42010.2	expressed protein	AC233572_11.1	hypothetical protein AC233572.2 52137-58374 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.17765.1.A1_at	R	R	CV273802	CV273802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17767.1.A1_at	R	R	CV273675	CV273675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17770.3.A1_at	R	R	CV273582	CV273582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17795.1.A1_at	R	R	CV272911	CV272911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17803.1.S1_at	R	R	CV272669	CV272669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17811.1.A1_at	R	R	CV272196	CV272196	NA	NA	NA	NA	AT3G22240.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits to 177 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g10500.1	hypothetical protein	Medtr4g125110.1	hypothetical protein 	NA	NA	NA
PtpAffx.17870.1.A1_at	R	R	CV270054	CV270054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17878.1.A1_at	R	R	CV269819	CV269819	NA	NA	NA	NA	AT5G54500.1	flavodoxin-like quinone reductase 1 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g078480.1	Flavodoxin/nitric oxide synthase 	NA	NA	NA
PtpAffx.17889.1.A1_at	R	R	CV269281	CV269281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17896.1.A1_at	R	R	CV269015	CV269015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.179.1.S1_at	R	R	DN500140	DN500140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17947.1.A1_at	R	R	CV266962	CV266962	scaffold_3:15605853-15606322(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17967.1.A1_at	R	R	CV266301	CV266301	scaffold_13:15550586-15551084(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.17993.1.A1_a_at	R	R	CV265522	CV265522	scaffold_4:9863147-9863565(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18012.1.A1_at	R	R	CV264844	CV264844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18072.1.A1_at	R	R	CV262319	CV262319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18074.2.A1_at	R	R	CV269097	CV269097	NA	NA	P0AEC0	UPF0053 inner membrane protein yoaE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.181.1.A1_at	R	R	DN489690	DN489690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18100.4.A1_a_at	R	R	CK089892	CK089892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18105.2.A1_at	R	R	CV268748	CV268748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18117.3.S1_at	R	R	CV255629	CV255629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18183.1.A1_at	R	R	CV257931	CV257931	scaffold_4:4422190-4422367(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18193.1.A1_at	R	R	CV257702	CV257702	scaffold_4:91283-91721(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18209.1.A1_at	R	R	CV257261	CV257261	NA	NA	P46276	"Fructose-1,6-bisphosphatase, cytosolic"	AT1G43670.1	Inositol monophosphatase family protein 	LOC_Os01g64660.2	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	NA	NA	NA
PtpAffx.18260.1.A1_at	R	R	CV266306	CV266306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.183.1.A1_at	R	R	DN489549	DN489549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18320.1.A1_at	R	R	CV253332	CV253332	scaffold_8:11363811-11364251(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18363.1.S1_at	R	R	BP929469	BP929469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18438.1.A1_s_at	R	R	CV250284	CV250284	scaffold_8:4309145-4309449(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18438.1.A1_x_at	R	R	CV250284	CV250284	scaffold_8:4309102-4309467(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18502.2.A1_at	R	R	CV244434	CV244434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18588.2.S1_at	R	R	CV254765	CV254765	NA	NA	A6MM75	"30S ribosomal protein S3, chloroplastic"	ATCG00800.1	structural constituent of ribosome 	LOC_Os09g24416.1	"chloroplast 30S ribosomal protein S3, putative"	Medtr4g042450.1	"Ribosomal protein S3, C-terminal "	NA	NA	NA
PtpAffx.18588.3.S1_at	R	R	DN496182	DN496182	NA	NA	Q14FB8	"50S ribosomal protein L22, chloroplastic"	ATCG00810.1	ribosomal protein L22 	LOC_Os09g24414.1	"chloroplast 50S ribosomal protein L22, putative"	Medtr7g120590.1	"Ribosomal protein L22, bacterial and organelle form "	NA	NA	NA
PtpAffx.18614.2.A1_at	R	R	CV255538	CV255538	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g106580.1	hypothetical protein 	NA	NA	NA
PtpAffx.187.1.A1_at	R	R	DN488801	DN488801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.188.2.A1_at	R	R	DN488680	DN488680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18857.1.A1_at	R	R	CV231098	CV231098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18888.3.S1_at	R	R	DN487308	DN487308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.189.1.S1_at	R	R	DN487914	DN487914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.18928.1.A1_at	R	R	CV228619	CV228619	NA	NA	P38385	Protein transport protein Sec61 subunit gamma	AT5G50460.1	secE/sec61-gamma protein transport protein 	LOC_Os02g08180.1	"protein transport protein SEC61 subunit gamma, putative, expressed"	Medtr5g091490.1	Protein secE/sec61-gamma protein 	NA	NA	NA
PtpAffx.192.1.S1_at	R	R	DN487464	DN487464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.19554.1.A1_at	R	R	CV275349	CV275349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.19592.2.S1_at	R	R	BP933103	BP933103	NA	NA	Q9XFS9	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic"	AT5G62790.2	1-deoxy-D-xylulose 5-phosphate reductoisomerase 	LOC_Os01g01710.1	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed"	Medtr8g125620.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase; ; 	NA	NA	NA
PtpAffx.19734.1.S1_at	R	R	BU870914	BU870914	NA	NA	NA	NA	NA	NA	LOC_Os05g34210.1	expressed protein	Medtr7g106190.3	"Transcription factors TFIIS, elongin A, CRSP70, conserved "	NA	NA	NA
PtpAffx.19843.1.S1_at	R	R	DN491083	DN491083	NA	NA	Q09FZ6	"NAD(P)H-quinone oxidoreductase chain 4, chloroplastic"	ATCG01050.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os07g22504.1	"NADPH-dependent oxidoreductase, putative"	Medtr4g022900.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.19866.1.S1_at	R	R	CK111532	CK111532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.19883.1.S1_at	R	R	DN496119	DN496119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.19894.1.S1_at	R	R	DN497614	DN497614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.1991.1.A1_at	R	R	CK097227	CK097227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.19956.1.S1_at	R	R	CK096932	CK096932	NA	NA	NA	NA	AT4G39770.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os02g51680.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr5g072070.1	Trehalose-phosphatase 	NA	NA	NA
PtpAffx.19985.1.A1_a_at	R	R	CK105894	CK105894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20008.1.S1_at	R	R	CK104938	CK104938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200086.1.S1_at	R	R	pmrna155	pmrna155	NA	NA	Q9SA25	Wall-associated receptor kinase-like 8	AT1G16260.2	Wall-associated kinase family protein 	LOC_Os02g56420.1	"OsWAK23 - OsWAK short gene, expressed"	AC147501_4.1	Tyrosine protein kinase AC147501.9 13523-10679 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.20022.1.S1_at	R	R	BI124087	BI124087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20027.1.S1_at	R	R	CK104223	CK104223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20038.1.S1_at	R	R	BI122444	BI122444	scaffold_4:20376249-20376410(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200468.1.S1_at	R	R	pmrna945	pmrna945	scaffold_1:6378570-6379033(+) (10)	NA	O65351	Subtilisin-like protease	AT2G05920.1	Subtilase family protein 	LOC_Os10g38080.1	"OsSub61 - Putative Subtilisin homologue, expressed"	Medtr5g011310.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	NA	NA	NA
PtpAffx.200508.1.S1_at	R	R	pmrna1028	pmrna1028	NA	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT1G52820.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr7g107560.1	Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.20062.1.S1_at	R	R	CK092789	CK092789	NA	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44380.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.200645.1.S1_at	R	R	pmrna1255	pmrna1255	NA	NA	A1E9V4	Cytochrome b6	ATCG00720.1	photosynthetic electron transfer B 	LOC_Os10g21324.1	"cytochrome b6, putative"	Medtr7g118440.1	"Cytochrome b/b6, N-terminal "	NA	NA	NA
PtpAffx.200646.1.S1_at	R	R	pmrna1257	pmrna1257	scaffold_1:16054755-16055022(+) (11)	NA	P93214	14-3-3 protein 9	AT1G22300.3	general regulatory factor 10 	NA	NA	Medtr4g134620.1	14-3-3 protein 	NA	NA	NA
PtpAffx.200672.1.S1_at	R	R	pmrna1308	pmrna1308	scaffold_1:17188910-17191293(-) (9)	NA	NA	NA	AT1G73020.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF590 (InterPro:IPR007632). 	LOC_Os01g51040.1	"transmembrane protein 16K, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.200693.1.S1_at	R	R	pmrna1341	pmrna1341	scaffold_1:21436935-21437147(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200700.1.S1_at	R	R	pmrna1350	pmrna1350	scaffold_1:21512807-21512948(-) (11)//scaffold_352:17698-17839(+) (11)//scaffold_488:14886-15027(+) (11)	NA	Q652P9	Germin-like protein 9-3	AT1G02335.1	germin-like protein subfamily 2 member 2 precursor 	LOC_Os09g39530.1	"Cupin domain containing protein, expressed"	Medtr2g107640.1	"Cupin, RmlC-type "	NA	NA	NA
PtpAffx.200740.1.S1_at	R	R	pmrna1422	pmrna1422	scaffold_1:24899796-24904250(-) (10)	NA	NA	NA	AT5G58750.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr8g138120.1	"progesterone 5-beta-reductase, putative "	NA	NA	NA
PtpAffx.200749.1.S1_at	R	R	pmrna1448	pmrna1448	scaffold_1:24673103-24673347(-) (11)	NA	NA	NA	AT3G47000.1	Glycosyl hydrolase family protein 	LOC_Os05g37700.1	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr5g078320.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	NA	NA	NA
PtpAffx.200758.1.S1_at	R	R	pmrna1467	pmrna1467	scaffold_1:24527585-24527843(-) (11)	NA	NA	NA	AT3G54040.1	PAR1 protein 	NA	NA	Medtr4g015430.1	PAR1 	NA	NA	NA
PtpAffx.200776.1.S1_at	R	R	pmrna1502	pmrna1502	NA	NA	P96110	Glutamate dehydrogenase	AT3G03910.1	glutamate dehydrogenase 3 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	NA	NA	NA
PtpAffx.200832.1.S1_x_at	R	R	pmrna1623	pmrna1623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.200878.1.S1_at	R	R	pmrna1720	pmrna1720	scaffold_1:26731809-26732393(+) (11)	NA	Q96323	Leucoanthocyanidin dioxygenase	AT3G13610.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g03034.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g058940.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.200892.1.S1_at	R	R	pmrna1753	pmrna1753	NA	NA	A4GYW6	"NAD(P)H-quinone oxidoreductase chain 4, chloroplastic"	ATCG01050.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os06g46435.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr4g022900.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.200892.1.S1_x_at	R	R	pmrna1753	pmrna1753	NA	NA	A4GYW6	"NAD(P)H-quinone oxidoreductase chain 4, chloroplastic"	ATCG01050.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os06g46435.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr4g022900.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.200893.1.S1_at	R	R	pmrna1754	pmrna1754	NA	NA	B1NWD5	"ATP synthase subunit alpha, chloroplastic"	ATCG00120.1	ATP synthase subunit alpha 	LOC_Os04g16740.1	"ATP synthase subunit alpha, putative, expressed"	Medtr4g042360.1	ATPase FliI/YscN 	NA	NA	NA
PtpAffx.200920.1.S1_at	R	R	pmrna1816	pmrna1816	NA	NA	Q8IVS2	"Malonyl-CoA-acyl carrier protein transacylase, mitochondrial"	AT2G30200.1	catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding 	LOC_Os03g18590.1	"malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor, putative, expressed"	Medtr3g033970.1	Acyl transferase region 	NA	NA	NA
PtpAffx.200978.1.S1_at	R	R	pmrna1918	pmrna1918	NA	NA	Q14FA9	Cytochrome c biogenesis protein ccsA	ATCG01040.1	Cytochrome C assembly protein 	LOC_Os06g46434.1	"cytochrome c biogenesis protein ccsA, putative"	Medtr4g022890.1	Cytochrome c assembly protein 	NA	NA	NA
PtpAffx.201.1.S1_at	R	R	DN496453	DN496453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201009.1.S1_at	R	R	pmrna1980	pmrna1980	scaffold_1:34781600-34781796(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201048.1.S1_at	R	R	pmrna2064	pmrna2064	scaffold_1:31848938-31849111(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201266.1.S1_at	R	R	pmrna2512	pmrna2512	scaffold_1:35967357-35967501(-) (11)	NA	Q0ZJ03	Cytochrome b559 subunit alpha	ATCG00580.1	photosystem II reaction center protein E 	LOC_Os10g21298.1	"cytochrome b559 subunit alpha, putative"	Medtr4g042270.1	Photosystem II protein PsbL; Photosystem II protein cytochrome b559; 	NA	NA	NA
PtpAffx.201380.1.S1_at	R	R	pmrna2722	pmrna2722	scaffold_1:42708304-42710512(-) (10)	NA	Q9LVP0	Probable leucine-rich repeat receptor-like protein kinase At5g63930	AT1G17230.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g05740.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.2015.1.S1_s_at	R	R	CK095747	CK095747	NA	NA	P15479	Isocitrate lyase	AT3G21720.1	isocitrate lyase 	LOC_Os07g34520.2	"isocitrate lyase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.201600.1.S1_at	R	R	pmrna3147	pmrna3147	scaffold_2:1205893-1206673(+) (10)	NA	Q9STX5	Endoplasmin homolog	AT4G24190.2	Chaperone protein htpG family protein 	LOC_Os06g50300.1	"heat shock protein, putative, expressed"	Medtr1g031360.1	"ATP-binding region, ATPase-like "	NA	NA	NA
PtpAffx.20167.1.A1_at	R	R	CK097098	CK097098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.201769.1.S1_at	R	R	pmrna3538	pmrna3538	NA	NA	NA	NA	AT1G71750.2	Hypoxanthine-guanine phosphoribosyltransferase 	LOC_Os05g08950.1	"phosphoribosyl transferase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.20190.1.A1_at	R	R	CK096199	CK096199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20192.1.A1_at	R	R	CK096178	CK096178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20198.1.S1_at	R	R	BU819620	BU819620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2021.1.A1_at	R	R	CK095229	CK095229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20213.1.S1_at	R	R	CK095345	CK095345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20217.1.A1_at	R	R	CK095187	CK095187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20221.1.A1_at	R	R	CK095046	CK095046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20222.1.A1_at	R	R	CK095026	CK095026	NA	NA	Q5KM33	Histone acetyltransferase ESA1	AT5G09740.2	histone acetyltransferase of the MYST family 2 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	NA	NA	NA
PtpAffx.20225.3.A1_at	R	R	CK094950	CK094950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202256.1.S1_at	R	R	pmrna4521	pmrna4521	scaffold_2:12833165-12833450(-) (11)	NA	A4GYQ9	Photosystem I P700 chlorophyll a apoprotein A2	ATCG00340.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38234.1	"photosystem I P700 chlorophyll a apoprotein A2, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.202283.1.S1_at	R	R	pmrna4569	pmrna4569	scaffold_2:13391482-13391685(-) (11)	NA	NA	NA	AT3G28540.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr6g010180.1	"AAA ATPase, central region "	NA	NA	NA
PtpAffx.20229.1.A1_at	R	R	CK094884	CK094884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2023.1.S1_at	R	R	CK095130	CK095130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20237.1.A1_at	R	R	CK094693	CK094693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20238.1.A1_at	R	R	CK094667	CK094667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20240.1.S1_at	R	R	CK094598	CK094598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20242.1.A1_at	R	R	CK094552	CK094552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20243.1.A1_at	R	R	CK094487	CK094487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20244.1.S1_at	R	R	CK108698	CK108698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202467.1.S1_at	R	R	pmrna4938	pmrna4938	scaffold_2:18662893-18662939(+) (11)	NA	NA	NA	AT5G07440.3	glutamate dehydrogenase 2 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	NA	NA	NA
PtpAffx.202491.1.S1_at	R	R	pmrna4991	pmrna4991	scaffold_2:17884211-17885152(-) (9)	NA	Q6Z4A7	"Probable 5'-adenylylsulfate reductase 1, chloroplastic"	AT4G21990.1	APS reductase 3 	LOC_Os07g32570.2	"OsAPRL1  adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed"	NA	NA	NA	NA	NA
PtpAffx.202514.1.S1_at	R	R	pmrna5033	pmrna5033	NA	NA	NA	NA	NA	NA	LOC_Os01g67390.1	"POEI32 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	NA	NA	NA	NA	NA
PtpAffx.20252.1.S1_at	R	R	DN484405	DN484405	NA	NA	Q9UUE6	"Lysyl-tRNA synthetase, cytoplasmic"	AT3G11710.1	lysyl-tRNA synthetase 1 	LOC_Os03g38980.3	"tRNA synthetases class II domain containing protein, expressed"	Medtr2g041510.1	"Aspartyl-tRNA synthetase, class IIb; nucleic acid binding, OB-fold, tRNA/helicase-type "	NA	NA	NA
PtpAffx.20254.1.S1_at	R	R	CV271880	CV271880	NA	NA	B8HWD3	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	AT4G34350.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase 	LOC_Os03g52170.1	"4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.20259.1.A1_at	R	R	CK093925	CK093925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2026.1.S1_at	R	R	BI125606	BI125606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20263.1.A1_at	R	R	CK093746	CK093746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202631.1.S1_x_at	R	R	pmrna5263	pmrna5263	NA	NA	P41615	Cytochrome b559 subunit alpha	ATCG00580.1	photosystem II reaction center protein E 	LOC_Os10g21298.1	"cytochrome b559 subunit alpha, putative"	Medtr4g042270.1	Photosystem II protein PsbL; Photosystem II protein cytochrome b559; 	NA	NA	NA
PtpAffx.202720.1.S1_at	R	R	pmrna5442	pmrna5442	scaffold_2:22833705-22834236(+) (11)	NA	P09523	Enzymatic polyprotein	NA	NA	LOC_Os05g32510.1	"retrotransposon protein, putative, unclassified"	Medtr5g062240.1	"Enzymatic polyprotein, related "	NA	NA	NA
PtpAffx.202748.1.S1_at	R	R	pmrna5482	pmrna5482	scaffold_2:23107389-23107890(-) (11)	NA	Q2TSC7	Glutathione gamma-glutamylcysteinyltransferase 1	AT5G44070.1	phytochelatin synthase 1 (PCS1) 	LOC_Os06g01260.1	"glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.20277.1.A1_a_at	R	R	CK092297	CK092297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20277.1.A1_at	R	R	CK092297	CK092297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202804.1.S1_at	R	R	pmrna5564	pmrna5564	scaffold_3:1225355-1225534(-) (11)	NA	A4GYV2	"50S ribosomal protein L2, chloroplastic"	ATCG01310.1	ribosomal protein L2 	LOC_Os10g21354.1	"chloroplast 50S ribosomal protein L2, putative"	Medtr3g043780.1	Ribosomal protein L2 	NA	NA	NA
PtpAffx.202814.1.S1_at	R	R	pmrna5581	pmrna5581	scaffold_133:11364-11614(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.202841.1.S1_at	R	R	pmrna5627	pmrna5627	scaffold_27:294430-294544(-) (11)	NA	C0LGS2	Probable LRR receptor-like serine/threonine-protein kinase At4g36180	AT5G23400.1	Leucine-rich repeat (LRR) family protein 	LOC_Os07g05190.1	"leucine-rich repeat family protein, putative, expressed"	Medtr7g009350.1	"Tyrosine protein kinase, active site "	NA	NA	NA
PtpAffx.202841.1.S1_x_at	R	R	pmrna5627	pmrna5627	scaffold_27:294290-294567(-) (11)	NA	C0LGS2	Probable LRR receptor-like serine/threonine-protein kinase At4g36180	AT5G23400.1	Leucine-rich repeat (LRR) family protein 	LOC_Os07g05190.1	"leucine-rich repeat family protein, putative, expressed"	Medtr7g009350.1	"Tyrosine protein kinase, active site "	NA	NA	NA
PtpAffx.202862.1.S1_at	R	R	pmrna5663	pmrna5663	NA	NA	NA	NA	AT1G73020.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF590 (InterPro:IPR007632). 	LOC_Os01g51040.1	"transmembrane protein 16K, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.202889.1.S1_x_at	R	R	pmrna5717	pmrna5717	scaffold_3:7860040-7860127(+) (9)	NA	Q09X17	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38229.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.202906.1.S1_at	R	R	pmrna5753	pmrna5753	scaffold_3:7337692-7338076(-) (11)	NA	Q96453	14-3-3-like protein D	AT2G42590.3	general regulatory factor 9 	LOC_Os02g36974.4	"14-3-3 protein, putative, expressed"	Medtr2g092800.1	14-3-3 protein 	NA	NA	NA
PtpAffx.203060.1.S1_at	R	R	pmrna6061	pmrna6061	scaffold_7:9421251-9421820(+) (11)	NA	A4GYQ9	Photosystem I P700 chlorophyll a apoprotein A2	ATCG00340.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38234.1	"photosystem I P700 chlorophyll a apoprotein A2, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.20328.1.A1_at	R	R	CK090339	CK090339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2033.1.S1_at	R	R	CK104413	CK104413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20330.1.A1_at	R	R	CK090219	CK090219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203306.1.S1_at	R	R	pmrna6556	pmrna6556	scaffold_3:14230528-14231091(-) (11)	NA	Q6Z8C8	Cyclin-dependent kinase F-4	AT4G19110.2	Protein kinase superfamily protein 	LOC_Os06g02550.2	"CPuORF21 - conserved peptide uORF-containing transcript, expressed"	Medtr5g027190.1	Protein kinase 	NA	NA	NA
PtpAffx.203354.1.S1_at	R	R	pmrna6682	pmrna6682	scaffold_3:15293306-15294337(+) (11)	NA	Q7Y1X1	Esterase	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g037600.1	"Lipolytic enzyme, G-D-S-L "	NA	NA	NA
PtpAffx.203387.1.S1_at	R	R	pmrna6741	pmrna6741	scaffold_3:15714177-15714687(-) (11)	NA	Q9LPV8	Eukaryotic peptide chain release factor subunit 1-2	AT1G12920.1	eukaryotic release factor 1-2 	LOC_Os07g39870.3	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	NA	NA	NA
PtpAffx.2034.1.A1_at	R	R	CK094456	CK094456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20340.1.A1_at	R	R	CK089685	CK089685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20342.1.A1_at	R	R	CK089631	CK089631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20347.1.A1_at	R	R	CK088863	CK088863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.203820.1.S1_at	R	R	pmrna7549	pmrna7549	scaffold_4:4601047-4601245(+) (10)	NA	P93213	14-3-3 protein 8	NA	NA	NA	NA	Medtr2g092800.1	14-3-3 protein 	NA	NA	NA
PtpAffx.203854.1.S1_at	R	R	pmrna7610	pmrna7610	NA	NA	P58387	Photosystem I P700 chlorophyll a apoprotein A2 (Fragment)	ATCG00340.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38234.1	"photosystem I P700 chlorophyll a apoprotein A2, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.2039.1.A1_at	R	R	CK093952	CK093952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2040.1.A1_at	R	R	CK093917	CK093917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204037.1.S1_at	R	R	pmrna7964	pmrna7964	NA	NA	Q9FG65	Cytochrome P450 81D1	AT3G28740.1	Cytochrome P450 superfamily protein 	LOC_Os12g39300.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	NA	NA
PtpAffx.204052.1.S1_at	R	R	pmrna7990	pmrna7990	scaffold_4:8739810-8740058(-) (11)	NA	Q94AZ2	Sugar transport protein 13	AT5G26340.1	Major facilitator superfamily protein 	LOC_Os07g37320.1	"transporter family protein, putative, expressed"	Medtr8g122830.1	General substrate transporter 	NA	NA	NA
PtpAffx.204103.1.S1_at	R	R	pmrna8096	pmrna8096	NA	NA	Q09FW1	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38229.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.204103.1.S1_x_at	R	R	pmrna8096	pmrna8096	NA	NA	Q09FW1	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38229.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.204122.1.S1_at	R	R	pmrna8131	pmrna8131	scaffold_4:14841698-14841890(-) (11)	NA	Q06GW6	Cytochrome b6-f complex subunit 4	ATCG00730.1	photosynthetic electron transfer D 	LOC_Os10g21326.1	"cytochrome b6-f complex subunit 4, putative"	Medtr4g042520.1	"Cytochrome b/b6, C-terminal; Photosynthetic reaction centre protein cytochrome b6/f_IV "	NA	NA	NA
PtpAffx.204167.1.S1_at	R	R	pmrna8211	pmrna8211	scaffold_4:10389117-10389362(+) (11)	NA	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr5g049410.1	Amino acid-binding ACT 	NA	NA	NA
PtpAffx.204192.1.S1_at	R	R	pmrna8253	pmrna8253	scaffold_4:16280127-16282572(-) (9)	NA	P23244	Hemoglobin-2	AT2G16060.1	hemoglobin 1 	LOC_Os03g12510.1	"non-symbiotic hemoglobin 2, putative, expressed"	Medtr5g087770.1	Globin 	NA	NA	NA
PtpAffx.204532.1.S1_at	R	R	pmrna8897	pmrna8897	scaffold_9:10807429-10807608(+) (10)	NA	A4GYP8	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	NA	NA	Medtr7g143380.1	"DNA-directed RNA polymerase subunit beta'', putative "	NA	NA	NA
PtpAffx.204533.1.S1_x_at	R	R	pmrna8898	pmrna8898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204596.1.S1_at	R	R	pmrna9025	pmrna9025	scaffold_9:10102949-10103947(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.204663.1.S1_at	R	R	pmrna9182	pmrna9182	scaffold_9:9069769-9075012(-) (10)	NA	Q1G3M3	B3 domain-containing protein At3g19184	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os06g09420.1	"B3 DNA binding domain containing protein, expressed"	Medtr3g147970.1	Transcriptional factor B3 	NA	NA	NA
PtpAffx.204798.1.S1_at	R	R	pmrna9455	pmrna9455	scaffold_9:7153197-7153542(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2050.1.A1_at	R	R	CK092623	CK092623	NA	NA	NA	NA	AT2G46710.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os02g45600.1	"rhoGAP domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.205034.1.S1_at	R	R	pmrna9972	pmrna9972	NA	NA	A4GYQ8	"30S ribosomal protein S14, chloroplastic"	ATCG00330.1	chloroplast ribosomal protein S14 	LOC_Os10g38238.1	"chloroplast 30S ribosomal protein S14, putative"	Medtr3g043630.1	Ribosomal protein S14 	NA	NA	NA
PtpAffx.205035.1.S1_at	R	R	pmrna9973	pmrna9973	NA	NA	A4GYQ9	Photosystem I P700 chlorophyll a apoprotein A2	ATCG00340.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38234.1	"photosystem I P700 chlorophyll a apoprotein A2, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.205036.1.S1_at	R	R	pmrna9974	pmrna9974	NA	NA	A4GYR0	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os05g01675.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.205058.1.S1_at	R	R	pmrna10019	pmrna10019	scaffold_9:2150560-2151004(+) (11)	NA	A4GYX4	Putative membrane protein ycf1	ATCG01130.1	Ycf1 protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205119.1.S1_at	R	R	pmrna10135	pmrna10135	scaffold_5:4285140-4285718(+) (11)	NA	NA	NA	AT1G60560.1	SWIM zinc finger family protein 	LOC_Os09g13880.1	"SWIM zinc finger family protein, putative, expressed"	Medtr8g047590.1	"Zinc finger, SWIM-type "	NA	NA	NA
PtpAffx.205389.1.S1_at	R	R	pmrna10674	pmrna10674	scaffold_5:17591912-17592092(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205464.1.S1_at	R	R	pmrna10798	pmrna10798	scaffold_5:14766335-14766585(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g45620.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.205477.1.S1_at	R	R	pmrna10837	pmrna10837	scaffold_5:14003975-14004511(-) (11)	NA	P35381	"ATP synthase subunit alpha, mitochondrial"	AT2G07698.1	"ATPase, F1 complex, alpha subunit protein "	LOC_Os09g08910.1	"ATP synthase, putative, expressed"	Medtr1g006540.1	ATPase FliI/YscN 	NA	NA	NA
PtpAffx.205509.1.S1_at	R	R	pmrna10886	pmrna10886	scaffold_5:13005327-13005681(-) (11)	NA	P93214	14-3-3 protein 9	AT1G26480.1	general regulatory factor 12 	LOC_Os01g11110.2	"14-3-3 protein, putative, expressed"	Medtr2g092570.2	14-3-3 protein 	NA	NA	NA
PtpAffx.205535.1.S1_at	R	R	pmrna10945	pmrna10945	scaffold_5:19041360-19041578(+) (11)	NA	NA	NA	NA	NA	LOC_Os11g23750.1	"retrotransposon protein, putative, Ty1-copia subclass"	NA	NA	NA	NA	NA
PtpAffx.20560.1.S1_at	R	R	CF228294	CF228294	scaffold_16:5044339-5044462(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.205894.1.S1_at	R	R	pmrna11685	pmrna11685	scaffold_5:25216493-25216593(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206077.1.S1_s_at	R	R	pmrna12042	pmrna12042	scaffold_6:2748885-2749114(-) (11)//scaffold_6:2759322-2759554(-) (11)	NA	A4GYW6	"NAD(P)H-quinone oxidoreductase chain 4, chloroplastic"	ATCG01050.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	NA	NA	Medtr7g021650.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.206098.1.S1_at	R	R	pmrna12083	pmrna12083	scaffold_6:3031283-3032428(+) (10)	NA	Q9SR79	Probable inactive purple acid phosphatase 16	AT3G10150.1	purple acid phosphatase 16 	LOC_Os01g71420.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.20622.1.A1_at	R	R	CV255082	CV255082	scaffold_13:14366517-14367965(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20623.2.S1_at	R	R	CK097618	CK097618	NA	NA	NA	NA	AT1G05760.1	Mannose-binding lectin superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20623.3.S1_at	R	R	DN490163	DN490163	NA	NA	NA	NA	AT1G05760.1	Mannose-binding lectin superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.20626.2.S1_at	R	R	CK097056	CK097056	NA	NA	NA	NA	AT1G27330.1	Ribosome associated membrane protein RAMP4 	LOC_Os11g41875.2	"membrane protein, putative, expressed"	Medtr2g030550.1	Ribosome associated membrane RAMP4 	NA	NA	NA
PtpAffx.20634.4.S1_at	R	R	CV273790	CV273790	scaffold_14:867274-867590(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206369.1.S1_at	R	R	pmrna12643	pmrna12643	scaffold_6:12071819-12071946(-) (11)	NA	NA	NA	AT1G61520.3	photosystem I light harvesting complex gene 3 	NA	NA	Medtr5g106420.1	Chlorophyll A-B binding protein 	NA	NA	NA
PtpAffx.206430.1.S1_at	R	R	pmrna12770	pmrna12770	scaffold_6:20608661-20608824(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206431.1.S1_at	R	R	pmrna12771	pmrna12771	scaffold_6:20608101-20608274(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206432.1.S1_at	R	R	pmrna12772	pmrna12772	scaffold_6:20607786-20607988(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206563.1.S1_at	R	R	pmrna13014	pmrna13014	NA	NA	NA	NA	AT5G57700.4	BNR/Asp-box repeat family protein 	LOC_Os07g33220.1	"BNR/Asp-box repeat family protein, putative, expressed"	Medtr8g127980.1	Sialidase 	NA	NA	NA
PtpAffx.206566.1.S1_at	R	R	pmrna13024	pmrna13024	scaffold_6:21120169-21120465(+) (11)	NA	P0CC48	"NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043720.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.206709.1.S1_at	R	R	pmrna13317	pmrna13317	scaffold_6:23657108-23657351(+) (10)	NA	Q6YZ99	Germin-like protein 8-9	AT3G05950.1	RmlC-like cupins superfamily protein 	LOC_Os08g09040.1	"Cupin domain containing protein, expressed"	Medtr1g093090.1	Germin 	NA	NA	NA
PtpAffx.206791.1.S1_at	R	R	pmrna13479	pmrna13479	NA	NA	NA	NA	AT1G15370.1	SNARE-like superfamily protein 	LOC_Os03g63910.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g126320.1	Longin-like 	NA	NA	NA
PtpAffx.206828.1.S1_at	R	R	pmrna13557	pmrna13557	scaffold_6:25662151-25662590(-) (11)	NA	NA	NA	AT4G31910.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.20686.1.S1_at	R	R	DN503345	DN503345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206870.1.S1_at	R	R	pmrna13640	pmrna13640	scaffold_7:57993-58204(+) (11)	NA	NA	NA	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os03g22020.1	"peroxidase precursor, putative, expressed"	Medtr5g082680.1	"Haem peroxidase, plant/fungal/bacterial "	NA	NA	NA
PtpAffx.20694.3.A1_at	R	R	CV253268	CV253268	scaffold_1:4398220-4398630(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.206984.1.S1_s_at	R	R	pmrna13835	pmrna13835	NA	NA	Q9LZR3	Glucomannan 4-beta-mannosyltransferase 9	AT5G03760.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr1g073500.1	"Glycosyl transferase, family 2 "	NA	NA	NA
PtpAffx.207.1.S1_at	R	R	BU889108	BU889108	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g034280.1	hypothetical protein 	NA	NA	NA
PtpAffx.207008.1.S1_at	R	R	pmrna13883	pmrna13883	scaffold_7:1759312-1759889(-) (9)	NA	Q14F97	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr4g062150.1	Chloroplast Ycf2 	NA	NA	NA
PtpAffx.207089.1.S1_at	R	R	pmrna14052	pmrna14052	scaffold_7:3138606-3138758(-) (11)	NA	P33629	Tubulin alpha chain	AT4G14960.2	Tubulin/FtsZ family protein 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	NA	NA	NA
PtpAffx.207245.1.S1_at	R	R	pmrna14360	pmrna14360	NA	NA	P93766	Protein MLO	AT2G39200.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.2	"MLO domain containing protein, putative, expressed"	Medtr3g160040.2	Mlo-related protein 	NA	NA	NA
PtpAffx.207254.1.S1_s_at	R	R	pmrna14378	pmrna14378	NA	NA	NA	NA	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os03g22020.1	"peroxidase precursor, putative, expressed"	Medtr5g082780.1	"Haem peroxidase, plant/fungal/bacterial "	NA	NA	NA
PtpAffx.207525.1.S1_at	R	R	pmrna14937	pmrna14937	scaffold_8:733078-734313(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207525.1.S1_x_at	R	R	pmrna14937	pmrna14937	scaffold_8:733078-734313(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.207563.1.S1_at	R	R	pmrna15013	pmrna15013	scaffold_8:1161115-1161150(+) (11)	NA	Q02200	Lignin-forming anionic peroxidase	NA	NA	LOC_Os07g48050.1	"peroxidase precursor, putative, expressed"	Medtr5g091290.1	"Haem peroxidase, plant/fungal/bacterial "	NA	NA	NA
PtpAffx.207632.1.S1_at	R	R	pmrna15131	pmrna15131	scaffold_8:2039532-2040042(-) (11)	NA	Q42676	"Transketolase, chloroplastic (Fragment)"	AT2G45290.1	Transketolase 	LOC_Os04g19740.1	"transketolase, chloroplast precursor, putative, expressed"	Medtr4g025540.2	Bacterial transketolase 	NA	NA	NA
PtpAffx.207706.1.S1_at	R	R	pmrna15303	pmrna15303	scaffold_8:3219739-3220137(+) (11)	NA	NA	NA	AT3G55360.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os01g05670.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr5g094710.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	NA	NA	NA
PtpAffx.207841.1.S1_at	R	R	pmrna15574	pmrna15574	scaffold_8:5201787-5202317(-) (10)	NA	Q40588	L-ascorbate oxidase	AT4G39830.1	Cupredoxin superfamily protein 	LOC_Os09g20090.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	NA	NA	NA
PtpAffx.207852.1.S1_at	R	R	pmrna15587	pmrna15587	NA	NA	NA	NA	AT4G33540.1	metallo-beta-lactamase family protein 	LOC_Os02g58270.1	"metallo-beta-lactamase family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.208009.1.S1_at	R	R	pmrna15893	pmrna15893	scaffold_8:7525963-7526539(-) (10)	NA	NA	NA	AT3G25805.1	unknown protein; Has 98 Blast hits to 98 proteins in 45 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os04g38850.1	expressed protein	Medtr5g068450.1	hypothetical protein 	NA	NA	NA
PtpAffx.208095.1.S1_at	R	R	pmrna16078	pmrna16078	NA	NA	P48261	Anthranilate synthase component II	AT5G57890.1	Glutamine amidotransferase type 1 family protein 	LOC_Os03g50880.1	"class I glutamine amidotransferase, putative, expressed"	Medtr1g121260.1	Anthranilate synthase component II/delta crystallin 	NA	NA	NA
PtpAffx.208114.1.S1_at	R	R	pmrna16119	pmrna16119	NA	NA	Q9FX35	"Pentatricopeptide repeat-containing protein At1g73400, mitochondrial"	AT1G73400.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g52220.1	"PPR repeat domain containing protein, putative, expressed"	Medtr6g089550.1	Pentatricopeptide repeat 	NA	NA	NA
PtpAffx.208221.1.S1_at	R	R	pmrna16362	pmrna16362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208221.1.S1_s_at	R	R	pmrna16362	pmrna16362	scaffold_8:11621496-11621925(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208323.1.S1_at	R	R	pmrna16547	pmrna16547	scaffold_8:13666446-13666747(+) (11)	NA	Q5Z678	IAA-amino acid hydrolase ILR1-like 6	AT5G54140.1	IAA-leucine-resistant (ILR1)-like 3 	LOC_Os06g47620.1	"peptidase, putative, expressed"	Medtr8g073970.1	Peptidase M20 	NA	NA	NA
PtpAffx.208421.1.S1_at	R	R	pmrna16735	pmrna16735	NA	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	LOC_Os03g12350.4	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	NA	NA	NA
PtpAffx.208517.1.S1_at	R	R	pmrna16901	pmrna16901	scaffold_10:3718728-3719319(+) (11)	NA	NA	NA	AT3G23590.1	REF4-related 1 	LOC_Os07g11000.1	"structural constituent of ribosome, putative, expressed"	Medtr2g026520.1	"REF4, putative "	NA	NA	NA
PtpAffx.208536.1.S1_at	R	R	pmrna16939	pmrna16939	scaffold_10:3209144-3209603(-) (10)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os04g23700.1	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	NA	NA	NA
PtpAffx.208546.1.S1_at	R	R	pmrna16960	pmrna16960	scaffold_10:2899316-2899718(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g16980.1	"retrotransposon protein, putative, unclassified"	Medtr2g021830.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.208597.1.S1_at	R	R	pmrna17061	pmrna17061	scaffold_10:8481785-8482009(+) (11)	NA	Q8W490	Serine/threonine-protein kinase PEPKR2	AT3G04530.1	phosphoenolpyruvate carboxylase kinase 2 	LOC_Os06g03682.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g093530.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.208698.1.S1_at	R	R	pmrna17255	pmrna17255	scaffold_10:6237965-6238205(+) (11)	NA	NA	NA	AT5G02500.1	heat shock cognate protein 70-1 	LOC_Os03g60620.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	NA	NA	NA
PtpAffx.208749.1.S1_at	R	R	pmrna17349	pmrna17349	scaffold_10:10059368-10059567(+) (11)	NA	NA	NA	AT1G60750.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os10g28320.4	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g140850.1	Aldo/keto reductase 	NA	NA	NA
PtpAffx.2088.1.A1_at	R	R	CK088698	CK088698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.208869.1.S1_at	R	R	pmrna17577	pmrna17577	NA	NA	Q41140	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha	AT1G20950.1	Phosphofructokinase family protein 	NA	NA	Medtr1g039920.1	Pyrophosphate-dependent phosphofructokinase PfpB 	NA	NA	NA
PtpAffx.208910.1.S1_at	R	R	pmrna17673	pmrna17673	scaffold_10:12774843-12776654(+) (9)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT1G22950.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.2	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.208948.1.S1_at	R	R	pmrna17729	pmrna17729	scaffold_10:13230136-13230554(-) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT1G13410.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g39130.1	"pentatricopeptide, putative, expressed"	Medtr8g077580.1	Asp/Glu racemase 	NA	NA	NA
PtpAffx.20895.2.S1_at	R	R	BU892021	BU892021	NA	NA	Q43314	Glutamate dehydrogenase 1	AT5G18170.1	glutamate dehydrogenase 1 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	NA	NA	NA
PtpAffx.208953.1.S1_at	R	R	pmrna17741	pmrna17741	scaffold_10:13325881-13325951(+) (11)	NA	P26849	NADH-ubiquinone oxidoreductase chain 5	ATMG00665.1	NADH dehydrogenase 5B 	NA	NA	Medtr1g007860.1	"NADH-ubiquinone oxidoreductase, chain 5 "	NA	NA	NA
PtpAffx.208953.1.S1_s_at	R	R	pmrna17741	pmrna17741	scaffold_10:13325984-13326278(+) (11)	NA	P26849	NADH-ubiquinone oxidoreductase chain 5	ATMG00665.1	NADH dehydrogenase 5B 	NA	NA	Medtr1g007860.1	"NADH-ubiquinone oxidoreductase, chain 5 "	NA	NA	NA
PtpAffx.208971.1.S1_at	R	R	pmrna17780	pmrna17780	scaffold_10:13614510-13615171(-) (11)	NA	NA	NA	AT5G38200.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os01g04620.3	"transposon protein, putative, unclassified, expressed"	Medtr7g093720.1	Peptidase C26 	NA	NA	NA
PtpAffx.209174.1.S1_at	R	R	pmrna18161	pmrna18161	scaffold_10:16204178-16204655(-) (11)	NA	NA	NA	AT1G62262.1	SLAC1 homologue 4 	LOC_Os01g14520.1	"C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed"	Medtr4g064790.1	C4-dicarboxylate transporter/malic acid transport protein 	NA	NA	NA
PtpAffx.209239.1.S1_at	R	R	pmrna18268	pmrna18268	scaffold_10:16997465-16997908(-) (10)	NA	O08966	Solute carrier family 22 member 1	AT1G79360.1	organic cation/carnitine transporter 2 	LOC_Os07g37530.2	"organic cation transporter-related, putative, expressed"	Medtr4g031840.1	Major facilitator superfamily MFS_1 	NA	NA	NA
PtpAffx.209480.1.S1_at	R	R	pmrna18801	pmrna18801	scaffold_10:21157806-21158128(+) (9)	NA	Q9STS3	Anaphase-promoting complex subunit 8	AT3G48150.1	anaphase-promoting complex subunit 8 	NA	NA	Medtr8g025280.1	Cdc23 	NA	NA	NA
PtpAffx.209646.1.S1_at	R	R	pmrna19046	pmrna19046	scaffold_11:1332879-1333209(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g079920.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.209646.1.S1_x_at	R	R	pmrna19046	pmrna19046	scaffold_11:1332879-1333209(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g079920.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.209756.1.S1_at	R	R	pmrna19251	pmrna19251	NA	NA	P0CD35	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043720.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.209810.1.S1_at	R	R	pmrna19349	pmrna19349	scaffold_11:11005370-11005634(+) (11)	NA	NA	NA	AT1G50650.1	Stigma-specific Stig1 family protein 	NA	NA	Medtr7g080840.1	Stigma-specific protein Stig1 	NA	NA	NA
PtpAffx.209850.1.S1_at	R	R	pmrna19419	pmrna19419	NA	NA	A4GYS3	Chloroplast envelope membrane protein	ATCG00530.1	CemA-like proton extrusion protein-related 	LOC_Os02g24598.1	"chloroplast envelope membrane protein, putative"	Medtr5g019440.1	CemA 	NA	NA	NA
PtpAffx.20988.1.S1_at	R	R	CV245916	CV245916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209900.1.S1_at	R	R	pmrna19513	pmrna19513	scaffold_11:8169391-8169640(+) (11)	NA	Q9FMP4	Pre-mRNA branch site p14-like protein	AT5G12190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g59710.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g096400.1	hypothetical protein 	NA	NA	NA
PtpAffx.209922.1.S1_at	R	R	pmrna19554	pmrna19554	scaffold_11:13305437-13306238(-) (10)	NA	NA	NA	AT1G78710.1	TRICHOME BIREFRINGENCE-LIKE 42 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g064330.1	"Protein of unknown function DUF231, plant "	NA	NA	NA
PtpAffx.209938.1.S1_at	R	R	pmrna19603	pmrna19603	scaffold_11:14033923-14034159(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.209977.1.S1_at	R	R	pmrna19680	pmrna19680	scaffold_11:14978452-14978610(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210007.1.S1_at	R	R	pmrna19736	pmrna19736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.210165.1.S1_at	R	R	pmrna20029	pmrna20029	scaffold_12:3223212-3223594(+) (11)	NA	NA	NA	AT1G18850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g113570.1	hypothetical protein 	NA	NA	NA
PtpAffx.210178.1.S1_at	R	R	pmrna20054	pmrna20054	scaffold_12:2962381-2962649(-) (11)	NA	NA	NA	AT2G18750.3	Calmodulin-binding protein 	LOC_Os02g35470.1	"calmodulin binding protein, putative, expressed"	Medtr4g125270.1	Calmodulin binding protein-like 	NA	NA	NA
PtpAffx.210404.1.S1_at	R	R	pmrna20448	pmrna20448	scaffold_12:4186674-4186980(-) (11)	NA	NA	NA	AT3G12870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g56700.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.210468.1.S1_at	R	R	pmrna20550	pmrna20550	NA	NA	P48718	Ribulose bisphosphate carboxylase large chain	ATCG00490.1	ribulose-bisphosphate carboxylases 	LOC_Os10g21268.1	"ribulose bisphosphate carboxylase large chain precursor, putative, expressed"	Medtr3g043740.1	"Ribulose bisphosphate carboxylase, large chain "	NA	NA	NA
PtpAffx.210549.1.S1_at	R	R	pmrna20697	pmrna20697	scaffold_12:8863746-8864158(-) (11)	NA	Q32RJ3	Apocytochrome f	ATCG00540.1	photosynthetic electron transfer A 	LOC_Os10g21290.1	"apocytochrome f precursor, putative"	NA	NA	NA	NA	NA
PtpAffx.210566.1.S1_at	R	R	pmrna20728	pmrna20728	scaffold_12:9258598-9258760(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21081.1.S1_at	R	R	CV264318	CV264318	scaffold_14:9667005-9667504(-) (11)	NA	Q8L7U5	Serine/threonine-protein phosphatase BSL1	AT4G03080.1	BRI1 suppressor 1 (BSU1)-like 1 	LOC_Os05g05240.2	"serine/threonine protein phosphatase, putative, expressed"	Medtr1g111110.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	NA	NA
PtpAffx.211096.1.S1_at	R	R	pmrna21796	pmrna21796	scaffold_13:4521088-4521414(+) (11)	NA	NA	NA	AT3G03740.1	BTB-POZ and MATH domain 4 	LOC_Os07g07270.1	"MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr5g094610.1	BTB/POZ; MATH; ; ; 	NA	NA	NA
PtpAffx.211108.1.S1_at	R	R	pmrna21824	pmrna21824	NA	NA	Q9CAZ0	F-box protein SKIP24	AT1G08710.2	F-box family protein 	LOC_Os01g59910.1	"OsFBX29 - F-box domain containing protein, expressed"	Medtr7g103990.1	"F-box family protein, putative "	NA	NA	NA
PtpAffx.211164.1.S1_at	R	R	pmrna21944	pmrna21944	scaffold_1:44451790-44452155(-) (11)	NA	Q38834	Disease resistance RPP13-like protein 4	AT3G50950.1	HOPZ-ACTIVATED RESISTANCE 1 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211267.1.S1_x_at	R	R	pmrna22105	pmrna22105	NA	NA	Q91WF7	Polyphosphoinositide phosphatase	AT1G22620.1	Phosphoinositide phosphatase family protein 	LOC_Os08g01750.3	"SAC domain containing protein, putative, expressed"	Medtr8g026210.1	"Synaptojanin, N-terminal "	NA	NA	NA
PtpAffx.21147.1.S1_at	R	R	BU888667	BU888667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211554.1.S1_at	R	R	pmrna22642	pmrna22642	scaffold_14:6133171-6133526(-) (11)	NA	NA	NA	AT2G46040.1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein 	LOC_Os04g08410.1	"ELM2 domain containing protein, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	NA	NA	NA
PtpAffx.211614.1.S1_at	R	R	pmrna22759	pmrna22759	scaffold_14:7017352-7018165(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211634.1.S1_at	R	R	pmrna22800	pmrna22800	scaffold_14:7367145-7368429(+) (9)	NA	P0CG73	Polyubiquitin	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.2	"ubiquitin family protein, putative, expressed"	Medtr4g110760.1	Ubiquitin 	NA	NA	NA
PtpAffx.211819.1.S1_at	R	R	pmrna23187	pmrna23187	scaffold_14:10154546-10155489(-) (10)	NA	P29196	Phosphoenolpyruvate carboxylase	AT2G42600.1	phosphoenolpyruvate carboxylase 2 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr4g109680.1	Phosphoenolpyruvate carboxylase 	NA	NA	NA
PtpAffx.21185.1.S1_at	R	R	CV247017	CV247017	scaffold_1:1180943-1181448(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.211872.1.S1_at	R	R	pmrna23309	pmrna23309	scaffold_14:11391067-11392417(-) (9)	NA	P40782	Cyprosin (Fragment)	AT1G62290.2	Saposin-like aspartyl protease family protein 	LOC_Os01g47410.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr7g134920.2	"Peptidase A1, pepsin "	NA	NA	NA
PtpAffx.211998.1.S1_at	R	R	pmrna23565	pmrna23565	scaffold_14:14839882-14840349(+) (10)	NA	Q9STG6	Deoxyuridine 5'-triphosphate nucleotidohydrolase	AT3G46940.1	DUTP-PYROPHOSPHATASE-LIKE 1 	LOC_Os03g46640.1	"deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.212.1.A1_at	R	R	DN485897	DN485897	NA	NA	P40533	Protein TED1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212054.1.S1_at	R	R	pmrna23657	pmrna23657	NA	NA	A4GYP0	Maturase K	ATCG00040.1	maturase K 	LOC_Os10g21194.1	"maturase K, putative"	Medtr3g043760.1	"Intron maturase, type II; Maturase-related, N-terminal "	NA	NA	NA
PtpAffx.212173.1.S1_at	R	R	pmrna23867	pmrna23867	NA	NA	Q9FMA8	Germin-like protein subfamily 1 member 11	AT5G38940.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr6g005290.1	Germin 	NA	NA	NA
PtpAffx.212180.1.S1_at	R	R	pmrna23879	pmrna23879	NA	NA	Q1KVW6	Photosystem II D2 protein	ATCG00270.1	photosystem II reaction center protein D 	LOC_Os10g41689.1	"photosystem II D2 protein, putative"	Medtr4g098620.1	Photosynthetic reaction centre protein 	NA	NA	NA
PtpAffx.212236.1.S1_x_at	R	R	pmrna23988	pmrna23988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212238.1.S1_at	R	R	pmrna23993	pmrna23993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212238.1.S1_x_at	R	R	pmrna23993	pmrna23993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212306.1.S1_at	R	R	pmrna24132	pmrna24132	NA	NA	Q7TPQ3	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076790.1	"Helicase, C-terminal "	NA	NA	NA
PtpAffx.212314.1.S1_at	R	R	pmrna24141	pmrna24141	scaffold_2:16323025-16323102(+) (10)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.212314.1.S1_x_at	R	R	pmrna24141	pmrna24141	scaffold_2:16322591-16323101(+) (10)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	Medtr8g074430.1	"integrase, related "	NA	NA	NA
PtpAffx.212507.1.S1_x_at	R	R	pmrna24495	pmrna24495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.212515.1.S1_at	R	R	pmrna24510	pmrna24510	scaffold_103:61318-62544(-) (11)	NA	Q00737	Chromosome segregation protein sudA	AT2G27170.2	Structural maintenance of chromosomes (SMC) family protein 	LOC_Os02g04040.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.212566.1.S1_at	R	R	pmrna24620	pmrna24620	scaffold_15:790723-791259(-) (11)	NA	Q03684	Luminal-binding protein 4	AT5G28540.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	NA	NA	NA
PtpAffx.212614.1.S1_at	R	R	pmrna24697	pmrna24697	NA	NA	Q9FID5	Probable receptor-like protein kinase At5g39030	AT5G38260.1	Protein kinase superfamily protein 	LOC_Os01g02350.1	"receptor-like kinase ARK1AS, putative, expressed"	Medtr6g043770.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.212709.1.S1_at	R	R	pmrna24859	pmrna24859	scaffold_15:4777600-4779499(-) (9)	NA	Q8L7A4	Probable ADP-ribosylation factor GTPase-activating protein AGD11	AT3G17980.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os05g31720.1	"stromal membrane-associated protein, putative, expressed"	Medtr4g154840.1	C2 	NA	NA	NA
PtpAffx.212764.1.S1_at	R	R	pmrna24971	pmrna24971	scaffold_15:9713143-9713466(-) (10)	NA	Q56ZN6	Pyrophosphate-energized membrane proton pump 2	AT1G78920.2	vacuolar H+-pyrophosphatase 2 	LOC_Os02g33490.1	"inorganic H+ pyrophosphatase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.212813.1.S1_at	R	R	pmrna25077	pmrna25077	scaffold_15:10787735-10787945(+) (11)	NA	NA	NA	AT4G23160.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 8 	LOC_Os09g26970.1	"retrotransposon protein, putative, unclassified"	CU179634_24.1	"Polynucleotidyl transferase, Ribonuclease H fold CU179634.6 87152-89450 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.212981.1.S1_at	R	R	pmrna25389	pmrna25389	scaffold_15:14909067-14909274(-) (10)	NA	Q9LW07	Probable polygalacturonase At3g15720	AT5G27530.1	Pectin lyase-like superfamily protein 	LOC_Os06g31270.1	"polygalacturonase, putative"	Medtr5g046260.1	"Glycoside hydrolase, family 28 "	NA	NA	NA
PtpAffx.212990.1.S1_at	R	R	pmrna25403	pmrna25403	NA	NA	NA	NA	AT5G04700.1	Ankyrin repeat family protein 	NA	NA	Medtr2g021770.1	hypothetical protein 	NA	NA	NA
PtpAffx.213089.1.S1_at	R	R	pmrna25611	pmrna25611	scaffold_15:13213177-13213287(+) (11)	NA	Q2PMT8	Photosystem II D2 protein	ATCG00270.1	photosystem II reaction center protein D 	LOC_Os10g41689.1	"photosystem II D2 protein, putative"	Medtr4g098620.1	Photosynthetic reaction centre protein 	NA	NA	NA
PtpAffx.213204.1.S1_at	R	R	pmrna25833	pmrna25833	NA	NA	Q6EI05	DELLA protein GAIP-B	AT1G14920.1	GRAS family transcription factor family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21322.1.A1_at	R	R	CK095079	CK095079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21331.1.A1_at	R	R	CV267125	CV267125	NA	NA	NA	NA	NA	NA	NA	NA	Medtr6g043710.1	"membrane located receptor-like protein, related "	NA	NA	NA
PtpAffx.213332.1.S1_at	R	R	pmrna26081	pmrna26081	scaffold_1187:2523-2681(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213412.1.S1_at	R	R	pmrna26235	pmrna26235	scaffold_16:5112216-5112526(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213453.1.S1_at	R	R	pmrna26304	pmrna26304	scaffold_16:5910875-5911398(+) (11)	NA	Q9FIH2	"Pentatricopeptide repeat-containing protein At5g42450, mitochondrial"	AT5G42450.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g62220.1	"pentatricopeptide, putative"	Medtr5g103280.1	Pentatricopeptide repeat 	NA	NA	NA
PtpAffx.213496.1.S1_at	R	R	pmrna26384	pmrna26384	scaffold_16:6768686-6769079(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g19510.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.213503.1.S1_at	R	R	pmrna26396	pmrna26396	NA	NA	P06405	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38229.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.213525.1.S1_at	R	R	pmrna26433	pmrna26433	NA	NA	Q9M0X9	4-coumarate--CoA ligase-like 7	AT4G05160.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g05780.1	"4-coumarate--CoA ligase-like 7, putative, expressed"	Medtr5g027650.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.213569.1.S1_at	R	R	pmrna26511	pmrna26511	scaffold_16:8363650-8363832(+) (9)	NA	P05500	ATP synthase subunit a	ATMG00410.1	ATPase subunit 6-1 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213581.1.S1_at	R	R	pmrna26530	pmrna26530	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21359.1.A1_at	R	R	DN492015	DN492015	scaffold_15:654610-654926(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213673.1.S1_x_at	R	R	pmrna26697	pmrna26697	scaffold_16:12625804-12625988(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213681.1.S1_at	R	R	pmrna26711	pmrna26711	scaffold_2965:157-333(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213681.1.S1_x_at	R	R	pmrna26711	pmrna26711	scaffold_2965:138-332(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213723.1.S1_at	R	R	pmrna26780	pmrna26780	scaffold_16:13524242-13524473(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213824.1.S1_at	R	R	pmrna26980	pmrna26980	scaffold_17:6397209-6397690(-) (11)	NA	Q6EW49	Photosystem I P700 chlorophyll a apoprotein A2	ATCG00340.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38234.1	"photosystem I P700 chlorophyll a apoprotein A2, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.213859.1.S1_at	R	R	pmrna27038	pmrna27038	scaffold_17:10022806-10023224(-) (10)	NA	A4GYS0	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213889.1.S1_at	R	R	pmrna27085	pmrna27085	NA	NA	NA	NA	AT3G28460.1	methyltransferases 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.213959.1.S1_at	R	R	pmrna27206	pmrna27206	scaffold_17:12533226-12533503(-) (11)	NA	Q9SX28	UPF0016 protein 5	AT1G68650.1	Uncharacterized protein family (UPF0016) 	LOC_Os08g33630.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	AC233660_16.1	Protein of unknown function UPF0016 AC233660.2 65616-67701 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.214038.1.S1_at	R	R	pmrna27333	pmrna27333	scaffold_18:7840546-7844798(+) (11)	NA	O97470	Mitochondrial substrate carrier family protein ancA	AT5G56450.1	Mitochondrial substrate carrier family protein 	LOC_Os05g46220.1	"mitochondrial carrier protein, putative, expressed"	Medtr3g139860.1	Mitochondrial substrate carrier 	NA	NA	NA
PtpAffx.214105.1.S1_at	R	R	pmrna27457	pmrna27457	scaffold_18:9304211-9304510(+) (11)	NA	A4GYP8	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	NA	NA	Medtr4g042160.1	"RNA polymerase Rpb1, domain 5 "	NA	NA	NA
PtpAffx.214106.1.S1_at	R	R	pmrna27458	pmrna27458	scaffold_18:9303227-9303711(+) (11)	NA	A4GYP8	DNA-directed RNA polymerase subunit beta''	ATCG00170.1	DNA-directed RNA polymerase family protein 	LOC_Os04g16830.1	"DNA-directed RNA polymerase subunit beta, putative"	Medtr4g042160.1	"RNA polymerase Rpb1, domain 5 "	NA	NA	NA
PtpAffx.214308.1.S1_at	R	R	pmrna27831	pmrna27831	scaffold_18:6110165-6110353(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g02940.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	NA	NA	NA
PtpAffx.214457.1.S1_at	R	R	pmrna28108	pmrna28108	scaffold_18:12108175-12108483(-) (11)	NA	P26413	Heat shock 70 kDa protein	AT3G12580.1	heat shock protein 70 	LOC_Os03g16860.1	"DnaK family protein, putative, expressed"	Medtr8g145020.1	Heat shock protein Hsp70 	NA	NA	NA
PtpAffx.21447.2.A1_a_at	R	R	CK095748	CK095748	NA	NA	NA	NA	AT5G07630.1	lipid transporters 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214627.1.S1_at	R	R	pmrna28423	pmrna28423	NA	NA	P06633	Imidazoleglycerol-phosphate dehydratase	AT3G22425.2	imidazoleglycerol-phosphate dehydratase 	LOC_Os04g52710.1	"imidazoleglycerol-phosphate dehydratase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.214631.1.S1_at	R	R	pmrna28428	pmrna28428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214632.1.S1_at	R	R	pmrna28429	pmrna28429	NA	NA	Q3K7N4	Chromosome initiation inhibitor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214633.1.S1_at	R	R	pmrna28432	pmrna28432	scaffold_180:12746-12887(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214636.1.S1_at	R	R	pmrna28435	pmrna28435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214638.1.S1_at	R	R	pmrna28438	pmrna28438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214639.1.S1_at	R	R	pmrna28439	pmrna28439	NA	NA	NA	NA	AT1G30130.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214640.1.S1_at	R	R	pmrna28440	pmrna28440	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214641.1.S1_at	R	R	pmrna28441	pmrna28441	NA	NA	A9C3F6	Alkanesulfonate monooxygenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214642.1.S1_at	R	R	pmrna28442	pmrna28442	NA	NA	P75853	Putative aliphatic sulfonates-binding protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214647.1.S1_s_at	R	R	pmrna28448	pmrna28448	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g108710.1	"Intron maturase, type II "	NA	NA	NA
PtpAffx.214648.1.S1_s_at	R	R	pmrna28449	pmrna28449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214650.1.S1_s_at	R	R	pmrna28452	pmrna28452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214651.1.S1_at	R	R	pmrna28455	pmrna28455	NA	NA	P37634	Uncharacterized protein yhiR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214654.1.S1_at	R	R	pmrna28458	pmrna28458	NA	NA	O86109	Cyanophycin synthetase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214656.1.S1_at	R	R	pmrna28464	pmrna28464	NA	NA	Q9XAZ0	Anthranilate synthase component 1	AT2G29690.1	anthranilate synthase 2 	LOC_Os03g61120.1	"anthranilate synthase component I-1, chloroplast precursor, putative, expressed"	Medtr3g093360.1	Anthranilate synthase component I 	NA	NA	NA
PtpAffx.214662.1.S1_at	R	R	pmrna28471	pmrna28471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214664.1.S1_at	R	R	pmrna28474	pmrna28474	NA	NA	P43935	Uncharacterized protein HI_0077	AT5G04520.1	Protein of unknown function DUF455 	LOC_Os01g11590.2	"uncharacterized protein HI0077, putative, expressed"	Medtr3g124330.1	Protein of unknown function DUF455 	NA	NA	NA
PtpAffx.214665.1.S1_at	R	R	pmrna28475	pmrna28475	NA	NA	P40882	Uncharacterized protein PA3753	AT1G19580.1	gamma carbonic anhydrase 1 	LOC_Os12g07220.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	NA	NA
PtpAffx.214677.1.S1_at	R	R	pmrna28493	pmrna28493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214678.1.S1_at	R	R	pmrna28494	pmrna28494	NA	NA	P76083	Probable 3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214682.1.S1_at	R	R	pmrna28500	pmrna28500	NA	NA	P02942	Methyl-accepting chemotaxis protein I	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214686.1.S1_at	R	R	pmrna28504	pmrna28504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214687.1.S1_at	R	R	pmrna28505	pmrna28505	NA	NA	A9BM60	Argininosuccinate synthase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214688.1.S1_at	R	R	pmrna28506	pmrna28506	NA	NA	A9BM59	UPF0345 protein Daci_4775	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214693.1.S1_at	R	R	pmrna28511	pmrna28511	NA	NA	Q9L9D7	Cocaine esterase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214696.1.S1_at	R	R	pmrna28514	pmrna28514	NA	NA	P93401	NADH-ubiquinone oxidoreductase chain 2	ATMG01320.1	NADH dehydrogenase 2B 	NA	NA	Medtr8g070580.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.214698.1.S1_at	R	R	pmrna28516	pmrna28516	NA	NA	P52689	Probable HTH-type transcriptional regulator ltrA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214706.1.S1_at	R	R	pmrna28529	pmrna28529	NA	NA	A1SX09	Ribosomal RNA large subunit methyltransferase L	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214713.1.S1_at	R	R	pmrna28537	pmrna28537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214714.1.S1_at	R	R	pmrna28538	pmrna28538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214720.1.S1_s_at	R	R	pmrna28547	pmrna28547	scaffold_12:12189327-12190256(-) (10)	NA	NA	NA	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os11g37260.1	"SEY1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.214721.1.S1_at	R	R	pmrna28548	pmrna28548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214722.1.S1_at	R	R	pmrna28550	pmrna28550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214736.1.S1_at	R	R	pmrna28569	pmrna28569	NA	NA	Q9SAK5	Myb family transcription factor APL	AT3G04030.3	Homeodomain-like superfamily protein 	LOC_Os03g20900.1	"Myb transcription factor, putative, expressed"	Medtr2g107820.1	"Peptidase M22, glycoprotease; Myb, DNA-binding; Homeodomain-related "	NA	NA	NA
PtpAffx.214747.1.S1_at	R	R	pmrna28581	pmrna28581	NA	NA	Q9CP13	DNA translocase ftsK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214749.1.S1_at	R	R	pmrna28583	pmrna28583	NA	NA	Q9US38	AB hydrolase superfamily protein C1039.03	AT3G63010.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os11g13570.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr6g071270.1	"Probable gibberellin receptor GID1L2, related "	NA	NA	NA
PtpAffx.214750.1.S1_at	R	R	pmrna28585	pmrna28585	NA	NA	Q9JZN9	Probable tonB-dependent receptor NMB0964	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214751.1.S1_at	R	R	pmrna28586	pmrna28586	NA	NA	Q9JZN9	Probable tonB-dependent receptor NMB0964	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214752.1.S1_at	R	R	pmrna28587	pmrna28587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214753.1.S1_at	R	R	pmrna28588	pmrna28588	NA	NA	Q9HQG0	Peptide methionine sulfoxide reductase msrA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214754.1.S1_at	R	R	pmrna28589	pmrna28589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214755.1.S1_at	R	R	pmrna28590	pmrna28590	NA	NA	P07772	"1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase"	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os11g43200.1	"tropinone reductase 2, putative"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.214756.1.S1_at	R	R	pmrna28591	pmrna28591	NA	NA	P42597	Uncharacterized protein ygjP	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214757.1.S1_at	R	R	pmrna28594	pmrna28594	NA	NA	P59217	Putative terminase large subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214758.1.S1_at	R	R	pmrna28595	pmrna28595	NA	NA	P65050	Uncharacterized protein Mb2919c	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214759.1.S1_at	R	R	pmrna28596	pmrna28596	NA	NA	Q8VCW8	"Acyl-CoA synthetase family member 2, mitochondrial"	AT1G20480.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117330.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.21476.1.S1_at	R	R	DN497119	DN497119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214760.1.S1_at	R	R	pmrna28597	pmrna28597	NA	NA	P21640	Precorrin-3B C(17)-methyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214765.1.S1_at	R	R	pmrna28605	pmrna28605	NA	NA	P26266	Ferric enterobactin transport protein fepE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214770.1.S1_at	R	R	pmrna28612	pmrna28612	NA	NA	P07801	Chemotaxis protein methyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214775.1.S1_at	R	R	pmrna28618	pmrna28618	NA	NA	P43672	ABC transporter ATP-binding protein uup	AT5G64840.1	general control non-repressible 5 	LOC_Os11g39020.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g144690.1	AAA ATPase 	NA	NA	NA
PtpAffx.214776.1.S1_at	R	R	pmrna28620	pmrna28620	NA	NA	P0AFJ4	Protein phnA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214777.1.S1_at	R	R	pmrna28621	pmrna28621	NA	NA	B6EMN5	Acetylornithine deacetylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214778.1.S1_at	R	R	pmrna28623	pmrna28623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214779.1.S1_at	R	R	pmrna28624	pmrna28624	NA	NA	P08982	Osmolarity sensor protein envZ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214784.1.S1_at	R	R	pmrna28629	pmrna28629	NA	NA	Q09X22	Photosystem II D2 protein	ATCG00270.1	photosystem II reaction center protein D 	LOC_Os04g16872.1	"photosystem II D2 protein, putative"	Medtr4g098620.1	Photosynthetic reaction centre protein 	NA	NA	NA
PtpAffx.214787.1.S1_at	R	R	pmrna28634	pmrna28634	NA	NA	O29445	D-3-phosphoglycerate dehydrogenase	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os06g44460.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	NA	NA	NA
PtpAffx.214792.1.S1_at	R	R	pmrna28641	pmrna28641	NA	NA	A9BPT7	Lipoyl synthase	AT5G08415.1	Radical SAM superfamily protein 	LOC_Os05g43576.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.214796.1.S1_at	R	R	pmrna28646	pmrna28646	NA	NA	P37641	Uncharacterized HTH-type transcriptional regulator yhjC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214798.1.S1_at	R	R	pmrna28649	pmrna28649	NA	NA	Q8P8Y5	Uncharacterized protein XCC2094	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214828.1.S1_at	R	R	pmrna28702	pmrna28702	scaffold_1:40812719-40813066(+) (11)	NA	Q9FIA0	Cytokinin-N-glucosyltransferase 2	AT5G59590.1	UDP-glucosyl transferase 76E2 	LOC_Os07g13634.1	"cytokinin-N-glucosyltransferase 1, putative, expressed"	Medtr3g092670.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
PtpAffx.214843.1.S1_at	R	R	pmrna28744	pmrna28744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214844.1.S1_at	R	R	pmrna28745	pmrna28745	NA	NA	Q126I4	Maf-like protein Bpro_3654	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214845.1.S1_at	R	R	pmrna28746	pmrna28746	NA	NA	Q0VTI9	Putative methyl-accepting chemotaxis AlkN	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214848.1.S1_at	R	R	pmrna28750	pmrna28750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214850.1.S1_at	R	R	pmrna28753	pmrna28753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214852.1.S1_at	R	R	pmrna28756	pmrna28756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214854.1.S1_at	R	R	pmrna28758	pmrna28758	NA	NA	P96681	Uncharacterized HTH-type transcriptional regulator ydfD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214862.1.S1_s_at	R	R	pmrna28767	pmrna28767	scaffold_5:7823540-7823695(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214865.1.S1_at	R	R	pmrna28770	pmrna28770	NA	NA	A1TVU0	Probable potassium transport system protein kup	AT2G30070.1	potassium transporter 1 	LOC_Os09g21000.1	"potassium transporter, putative, expressed"	Medtr2g008870.1	K+ potassium transporter 	NA	NA	NA
PtpAffx.214870.1.S1_at	R	R	pmrna28779	pmrna28779	NA	NA	P37665	Inner membrane lipoprotein yiaD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214871.1.S1_at	R	R	pmrna28780	pmrna28780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214872.1.S1_at	R	R	pmrna28782	pmrna28782	NA	NA	P0A2J1	High-affinity branched-chain amino acid transport system permease protein livH	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214876.1.S1_at	R	R	pmrna28786	pmrna28786	NA	NA	O59791	Serine racemase	AT4G11640.1	serine racemase 	LOC_Os04g46930.2	"serine racemase, putative, expressed"	Medtr4g149590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	NA	NA	NA
PtpAffx.214877.1.S1_at	R	R	pmrna28787	pmrna28787	NA	NA	P58339	Ornithine cyclodeaminase 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214879.1.S1_at	R	R	pmrna28790	pmrna28790	NA	NA	P0AFN9	Inner membrane transport permease yadH	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214880.1.S1_at	R	R	pmrna28791	pmrna28791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214881.1.S1_at	R	R	pmrna28792	pmrna28792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214882.1.S1_at	R	R	pmrna28794	pmrna28794	NA	NA	P35571	"Glycerol-3-phosphate dehydrogenase, mitochondrial"	AT3G10370.1	FAD-dependent oxidoreductase family protein 	LOC_Os04g14790.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr1g068510.1	FAD-dependent glycerol-3-phosphate dehydrogenase 	NA	NA	NA
PtpAffx.214883.1.S1_at	R	R	pmrna28795	pmrna28795	NA	NA	Q3S4B7	3-hydroxybenzoate 6-hydroxylase	NA	NA	NA	NA	Medtr4g024040.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal "	NA	NA	NA
PtpAffx.214887.1.S1_at	R	R	pmrna28799	pmrna28799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214888.1.S1_at	R	R	pmrna28800	pmrna28800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214890.1.S1_at	R	R	pmrna28803	pmrna28803	NA	NA	P44761	Uncharacterized protein HI_0575	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214891.1.S1_at	R	R	pmrna28804	pmrna28804	NA	NA	Q57194	Protein tusC homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214895.1.S1_a_at	R	R	pmrna28810	pmrna28810	scaffold_1:38062639-38064577(-) (11)//scaffold_1:38064527-38064779(-) (11)//scaffold_1:38064729-38064954(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214895.1.S1_x_at	R	R	pmrna28810	pmrna28810	scaffold_1:38062612-38064593(-) (10)//scaffold_1:38064500-38064795(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214901.1.S1_at	R	R	pmrna28818	pmrna28818	NA	NA	O34873	Hydroxymethylglutaryl-CoA lyase yngG	AT2G26800.2	Aldolase superfamily protein 	LOC_Os01g16350.2	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.2	Hydroxymethylglutaryl-coenzyme A lyase active site 	NA	NA	NA
PtpAffx.214902.1.S1_at	R	R	pmrna28819	pmrna28819	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214907.1.S1_at	R	R	pmrna28824	pmrna28824	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214911.1.S1_at	R	R	pmrna28828	pmrna28828	NA	NA	P45094	Dipeptide transport ATP-binding protein DppF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214912.1.S1_at	R	R	pmrna28829	pmrna28829	NA	NA	P63935	Probable 3-hydroxyisobutyrate dehydrogenase	AT4G20930.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g46372.1	"dehydrogenase, putative, expressed"	Medtr2g129830.1	"Hydroxyacid dehydrogenase/reductase; 6-phosphogluconate dehydrogenase, C-terminal-like; ; "	NA	NA	NA
PtpAffx.214921.1.S1_at	R	R	pmrna28842	pmrna28842	NA	NA	P0A8Z2	Acyl-CoA thioester hydrolase yciA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214928.1.S1_at	R	R	pmrna28851	pmrna28851	NA	NA	P32701	Uncharacterized membrane protein YjcC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214933.1.S1_at	R	R	pmrna28862	pmrna28862	NA	NA	Q9AIU0	HTH-type transcriptional regulator ttgR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214934.1.S1_at	R	R	pmrna28863	pmrna28863	NA	NA	P28894	Fumarate hydratase class II 1	AT2G47510.2	fumarase 1 	LOC_Os03g21950.1	"fumarate hydratase, mitochondrial precursor, putative, expressed"	Medtr1g107740.1	"Fumarate lyase; Fumarate hydratase, class II "	NA	NA	NA
PtpAffx.214938.1.S1_at	R	R	pmrna28867	pmrna28867	NA	NA	Q9UHK6	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214941.1.S1_at	R	R	pmrna28871	pmrna28871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214942.1.S1_at	R	R	pmrna28872	pmrna28872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214943.1.S1_at	R	R	pmrna28873	pmrna28873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214945.1.S1_at	R	R	pmrna28875	pmrna28875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214946.1.S1_at	R	R	pmrna28876	pmrna28876	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214949.1.S1_at	R	R	pmrna28879	pmrna28879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214950.1.S1_at	R	R	pmrna28880	pmrna28880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214955.1.S1_at	R	R	pmrna28887	pmrna28887	NA	NA	Q82XD4	Spermidine synthase	AT5G19530.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g33710.4	"spermidine synthase, putative, expressed"	Medtr5g006230.1	Spermine synthase 	NA	NA	NA
PtpAffx.214958.1.S1_at	R	R	pmrna28890	pmrna28890	NA	NA	P0ACU4	HTH-type transcriptional regulator RutR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214959.1.S1_at	R	R	pmrna28892	pmrna28892	NA	NA	Q1LS04	Bifunctional protein glmU	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214962.1.S1_at	R	R	pmrna28896	pmrna28896	NA	NA	Q57G26	Probable phosphoglycerate mutase gpmB	AT3G50520.1	Phosphoglycerate mutase family protein 	LOC_Os08g37140.1	"phosphoglycerate mutase, putative, expressed"	Medtr8g097040.1	Phosphoglycerate/bisphosphoglycerate mutase 	NA	NA	NA
PtpAffx.214963.1.S1_at	R	R	pmrna28897	pmrna28897	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214971.1.S1_at	R	R	pmrna28906	pmrna28906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214972.1.S1_at	R	R	pmrna28907	pmrna28907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214980.1.S1_at	R	R	pmrna28915	pmrna28915	NA	NA	Q475S5	Tyrosyl-tRNA synthetase	AT3G02660.1	"Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial "	LOC_Os01g31610.1	"tyrosyl-tRNA synthetase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.214981.1.S1_at	R	R	pmrna28917	pmrna28917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214992.1.S1_at	R	R	pmrna28930	pmrna28930	NA	NA	Q7DDS7	Septum site-determining protein minD	AT5G24020.1	septum site-determining protein (MIND) 	LOC_Os06g01690.1	"septum site-determining protein minD, putative, expressed"	Medtr4g092230.1	"Septum site-determining protein minD, putative "	NA	NA	NA
PtpAffx.214994.1.S1_at	R	R	pmrna28932	pmrna28932	NA	NA	P21367	Uncharacterized protein ycaC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214995.1.S1_at	R	R	pmrna28933	pmrna28933	NA	NA	Q8JZN5	"Acyl-CoA dehydrogenase family member 9, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.214996.1.S1_at	R	R	pmrna28934	pmrna28934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215002.1.S1_at	R	R	pmrna28942	pmrna28942	NA	NA	Q1LL27	Acetyl-coenzyme A synthetase	AT5G36880.2	acetyl-CoA synthetase 	LOC_Os02g32490.1	"AMP-binding enzyme, putative, expressed"	Medtr7g099650.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.215003.1.S1_at	R	R	pmrna28943	pmrna28943	NA	NA	P31640	Uncharacterized symporter H16_A2524	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215004.1.S1_at	R	R	pmrna28944	pmrna28944	NA	NA	P55620	Probable transposase for insertion sequence element ISRM3-like	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215005.1.S1_at	R	R	pmrna28945	pmrna28945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215019.1.S1_at	R	R	pmrna28964	pmrna28964	NA	NA	Q8GYL7	"Pentatricopeptide repeat-containing protein At5g02830, chloroplastic"	AT5G02830.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g17634.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g120750.1	Pentatricopeptide repeat 	NA	NA	NA
PtpAffx.215020.1.S1_at	R	R	pmrna28966	pmrna28966	NA	NA	Q4L8Q6	Oxygen regulatory protein nreC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215029.1.S1_at	R	R	pmrna28976	pmrna28976	NA	NA	P44016	Putative oligopeptide transporter HI_0561	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215030.1.S1_at	R	R	pmrna28978	pmrna28978	NA	NA	B0UV22	Pantothenate kinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215031.1.S1_at	R	R	pmrna28979	pmrna28979	NA	NA	P45240	Sodium/glutamate symport carrier protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215032.1.S1_at	R	R	pmrna28980	pmrna28980	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215032.1.S1_x_at	R	R	pmrna28980	pmrna28980	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215033.1.S1_at	R	R	pmrna28981	pmrna28981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215034.1.S1_at	R	R	pmrna28982	pmrna28982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215037.1.S1_at	R	R	pmrna28987	pmrna28987	NA	NA	Q1LQ00	Adenosine deaminase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215039.1.S1_at	R	R	pmrna28990	pmrna28990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215040.1.S1_at	R	R	pmrna28991	pmrna28991	NA	NA	P77302	Probable diguanylate cyclase YdaM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215041.1.S1_at	R	R	pmrna28992	pmrna28992	NA	NA	P46392	Acetyl-/propionyl-coenzyme A carboxylase alpha chain	AT5G35360.3	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	NA	NA	NA
PtpAffx.215049.1.S1_at	R	R	pmrna29001	pmrna29001	NA	NA	A1WJU9	Apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215050.1.S1_at	R	R	pmrna29002	pmrna29002	NA	NA	Q9CM13	Magnesium and cobalt efflux protein CorC	AT3G13070.1	CBS domain-containing protein / transporter associated domain-containing protein 	LOC_Os03g39640.2	"CBS domain containing protein, expressed"	Medtr5g102230.1	CBS; Transporter-associated region 	NA	NA	NA
PtpAffx.215076.1.S1_at	R	R	pmrna29041	pmrna29041	scaffold_19:1462646-1462933(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g077920.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.215085.1.S1_at	R	R	pmrna29059	pmrna29059	NA	NA	Q9CNL6	Replicative DNA helicase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215095.1.S1_at	R	R	pmrna29071	pmrna29071	NA	NA	O53021	Peptidyl-prolyl cis-trans isomerase A	AT3G44600.1	cyclophilin71 	LOC_Os06g04000.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	AC233070_2.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type AC233070.4 3910-1563 F EGN_Mt090430 200"	NA	NA	NA
PtpAffx.215096.1.S1_at	R	R	pmrna29072	pmrna29072	NA	NA	P83221	Peptidyl-prolyl cis-trans isomerase cyp18	AT3G44600.1	cyclophilin71 	LOC_Os08g44330.2	"peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed"	AC233070_2.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type AC233070.4 3910-1563 F EGN_Mt090430 200"	NA	NA	NA
PtpAffx.215102.1.S1_at	R	R	pmrna29081	pmrna29081	NA	NA	P10047	C4-dicarboxylate transport sensor protein dctB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215103.1.S1_at	R	R	pmrna29082	pmrna29082	NA	NA	P24197	Uncharacterized protein ygiD	AT4G15093.1	catalytic LigB subunit of aromatic ring-opening dioxygenase family 	LOC_Os01g65680.1	"4,5-DOPA dioxygenase extradiol, putative, expressed"	Medtr7g035130.1	"Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B "	NA	NA	NA
PtpAffx.215105.1.S1_at	R	R	pmrna29086	pmrna29086	scaffold_3:10457009-10457388(-) (11)	NA	Q0WQD2	Probable galacturonosyltransferase 3	AT4G38270.1	galacturonosyltransferase 3 	LOC_Os10g21890.2	"glycosyl transferase family 8, putative, expressed"	Medtr3g136240.1	"Glycosyl transferase, family 8 "	NA	NA	NA
PtpAffx.215131.1.S1_at	R	R	pmrna29140	pmrna29140	scaffold_3:9942155-9942338(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215153.1.S1_at	R	R	pmrna29191	pmrna29191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215155.1.S1_at	R	R	pmrna29193	pmrna29193	NA	NA	A9BV10	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215165.1.S1_at	R	R	pmrna29205	pmrna29205	NA	NA	P69410	Capsular synthesis regulator component B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215167.1.S1_at	R	R	pmrna29208	pmrna29208	NA	NA	P77302	Probable diguanylate cyclase YdaM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215171.1.S1_s_at	R	R	pmrna29213	pmrna29213	NA	NA	A4GYX4	Putative membrane protein ycf1	ATCG01130.1	Ycf1 protein 	NA	NA	Medtr4g023010.1	Ycf1 	NA	NA	NA
PtpAffx.215177.1.S1_at	R	R	pmrna29221	pmrna29221	scaffold_15:1922864-1923084(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g006660.1	hypothetical protein 	NA	NA	NA
PtpAffx.215178.1.S1_at	R	R	pmrna29222	pmrna29222	scaffold_15:1923476-1923767(-) (11)	NA	P10330	NADH-ubiquinone oxidoreductase chain 5	ATMG00665.1	NADH dehydrogenase 5B 	NA	NA	Medtr1g007860.1	"NADH-ubiquinone oxidoreductase, chain 5 "	NA	NA	NA
PtpAffx.215180.1.S1_at	R	R	pmrna29224	pmrna29224	scaffold_15:2034610-2035018(+) (10)	NA	NA	NA	AT1G48960.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215191.1.S1_at	R	R	pmrna29240	pmrna29240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215192.1.S1_at	R	R	pmrna29241	pmrna29241	NA	NA	Q52814	General L-amino acid transport system permease protein AapM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215193.1.S1_at	R	R	pmrna29242	pmrna29242	NA	NA	Q52813	General L-amino acid transport system permease protein AapQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215205.1.S1_at	R	R	pmrna29256	pmrna29256	NA	NA	P28269	Omega-amino acid--pyruvate aminotransferase	AT3G22200.2	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os04g52450.1	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	NA	NA
PtpAffx.215208.1.S1_at	R	R	pmrna29261	pmrna29261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215214.1.S1_at	R	R	pmrna29271	pmrna29271	scaffold_19:14720342-14720577(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215222.1.S1_at	R	R	pmrna29284	pmrna29284	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr1g130090.1	Chloroplast Ycf2 	NA	NA	NA
PtpAffx.215222.1.S1_x_at	R	R	pmrna29284	pmrna29284	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr1g130090.1	Chloroplast Ycf2 	NA	NA	NA
PtpAffx.215276.1.S1_at	R	R	pmrna29369	pmrna29369	NA	NA	Q55CV9	CaiB/baiF CoA-transferase family protein DDB_G0269880	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215277.1.S1_at	R	R	pmrna29370	pmrna29370	NA	NA	P06621	Carboxypeptidase G2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215278.1.S1_at	R	R	pmrna29371	pmrna29371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215280.1.S1_at	R	R	pmrna29374	pmrna29374	NA	NA	O34421	Probable acyl-CoA dehydrogenase yngJ	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.5	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g081040.1	"Acyl-CoA dehydrogenase, N-terminal; "	NA	NA	NA
PtpAffx.215281.1.S1_at	R	R	pmrna29375	pmrna29375	NA	NA	B2JGG8	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215283.1.S1_at	R	R	pmrna29377	pmrna29377	NA	NA	P71377	ATP-dependent zinc metalloprotease FtsH	AT5G42270.1	FtsH extracellular protease family 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr3g139920.1	"AAA ATPase; Peptidase M41, FtsH "	NA	NA	NA
PtpAffx.215284.1.S1_at	R	R	pmrna29378	pmrna29378	NA	NA	B5Y1L0	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215285.1.S1_at	R	R	pmrna29379	pmrna29379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215287.1.S1_at	R	R	pmrna29381	pmrna29381	NA	NA	A9BPU7	ATP synthase subunit beta	ATCG00480.1	ATP synthase subunit beta 	LOC_Os10g21266.1	"ATP synthase subunit beta, putative"	Medtr7g021760.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, delta/epsilon subunit "	NA	NA	NA
PtpAffx.215319.1.S1_at	R	R	pmrna29439	pmrna29439	NA	NA	P14697	Acetoacetyl-CoA reductase	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g30060.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.215322.1.S1_at	R	R	pmrna29442	pmrna29442	NA	NA	P19914	Carbon monoxide dehydrogenase medium chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215323.1.S1_at	R	R	pmrna29443	pmrna29443	NA	NA	P19921	Carbon monoxide dehydrogenase small chain	AT4G34890.1	xanthine dehydrogenase 1 	NA	NA	Medtr5g094490.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	NA	NA	NA
PtpAffx.215324.1.S1_at	R	R	pmrna29444	pmrna29444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215325.1.S1_at	R	R	pmrna29445	pmrna29445	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215326.1.S1_at	R	R	pmrna29446	pmrna29446	NA	NA	Q6LYC4	Uncharacterized iron-sulfur protein MMP1067	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215327.1.S1_at	R	R	pmrna29447	pmrna29447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215332.1.S1_at	R	R	pmrna29456	pmrna29456	NA	NA	P73452	Nitrate transport protein nrtA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215333.1.S1_at	R	R	pmrna29457	pmrna29457	NA	NA	P45857	Acyl-CoA dehydrogenase	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.2	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.2	"Acyl-CoA dehydrogenase, N-terminal; "	NA	NA	NA
PtpAffx.215336.1.S1_at	R	R	pmrna29461	pmrna29461	NA	NA	Q8P1F1	Putative 2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215340.1.S1_at	R	R	pmrna29466	pmrna29466	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215356.1.S1_at	R	R	pmrna29497	pmrna29497	scaffold_15:5850237-5850458(+) (11)	NA	Q06RD2	Photosystem I P700 chlorophyll a apoprotein A2	ATCG00340.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38234.1	"photosystem I P700 chlorophyll a apoprotein A2, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.215357.1.S1_at	R	R	pmrna29498	pmrna29498	scaffold_15:5849981-5850165(+) (11)	NA	Q70Y04	Photosystem I P700 chlorophyll a apoprotein A2	ATCG00340.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38234.1	"photosystem I P700 chlorophyll a apoprotein A2, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.215395.1.S1_at	R	R	pmrna29556	pmrna29556	NA	NA	P21865	Sensor protein kdpD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215396.1.S1_at	R	R	pmrna29557	pmrna29557	NA	NA	Q8XU10	Potassium-transporting ATPase C chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215397.1.S1_at	R	R	pmrna29558	pmrna29558	NA	NA	P76027	Oligopeptide transport ATP-binding protein oppD	AT1G10680.1	P-glycoprotein 10 	NA	NA	Medtr5g029640.1	Cyclic peptide transporter 	NA	NA	NA
PtpAffx.215398.1.S1_at	R	R	pmrna29559	pmrna29559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215399.1.S1_at	R	R	pmrna29560	pmrna29560	NA	NA	C0SP82	Probable oxidoreductase yoaE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215400.1.S1_at	R	R	pmrna29561	pmrna29561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215401.1.S1_at	R	R	pmrna29562	pmrna29562	NA	NA	Q8ZES9	Long-chain-fatty-acid--CoA ligase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215402.1.S1_at	R	R	pmrna29563	pmrna29563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215407.1.S1_at	R	R	pmrna29570	pmrna29570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215411.1.S1_at	R	R	pmrna29575	pmrna29575	NA	NA	Q5SLP1	Ribonuclease TTHA0252	AT1G61010.3	cleavage and polyadenylation specificity factor 73-I 	LOC_Os03g63590.1	"metallo-beta-lactamase, putative, expressed"	Medtr2g006480.1	Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase 	NA	NA	NA
PtpAffx.215469.1.S1_at	R	R	pmrna29684	pmrna29684	NA	NA	O07622	Putative Rieske 2Fe-2S iron-sulfur protein yhfW	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215470.1.S1_at	R	R	pmrna29685	pmrna29685	NA	NA	P0ADV5	Uncharacterized protein yhbW	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215476.1.S1_at	R	R	pmrna29694	pmrna29694	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215478.1.S1_at	R	R	pmrna29696	pmrna29696	NA	NA	P58114	Pirin-like protein CC_3178	AT2G43120.1	RmlC-like cupins superfamily protein 	LOC_Os03g62790.2	"pirin, putative, expressed"	Medtr5g101700.1	"Pirin, N-terminal "	NA	NA	NA
PtpAffx.215500.1.S1_at	R	R	pmrna29731	pmrna29731	NA	NA	Q9SKU6	"Pentatricopeptide repeat-containing protein At2g20710, mitochondrial"	AT2G20710.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	NA	NA	NA
PtpAffx.215536.1.S1_at	R	R	pmrna29792	pmrna29792	NA	NA	P23608	Poly-beta-hydroxybutyrate polymerase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215537.1.S1_at	R	R	pmrna29793	pmrna29793	NA	NA	P57109	Maleylacetoacetate isomerase	AT2G02390.1	glutathione S-transferase zeta 1 	LOC_Os11g14040.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.215538.1.S1_at	R	R	pmrna29794	pmrna29794	NA	NA	Q9UYW0	Uncharacterized protein PYRAB13970	AT4G15940.1	Fumarylacetoacetate (FAA) hydrolase family 	LOC_Os03g61330.2	"fumarylacetoacetase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.215539.1.S1_at	R	R	pmrna29795	pmrna29795	NA	NA	P93740	"Nudix hydrolase 23, chloroplastic"	AT2G42070.1	nudix hydrolase homolog 23 	LOC_Os09g38040.1	"hydrolase, NUDIX family protein, expressed"	Medtr7g111980.1	NUDIX hydrolase 	NA	NA	NA
PtpAffx.215540.1.S1_at	R	R	pmrna29796	pmrna29796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215543.1.S1_at	R	R	pmrna29802	pmrna29802	NA	NA	P29958	Aculeacin-A acylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215544.1.S1_at	R	R	pmrna29803	pmrna29803	NA	NA	P31442	Multidrug resistance protein D	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215545.1.S1_at	R	R	pmrna29805	pmrna29805	NA	NA	Q9JZ07	Inositol-1-monophosphatase	AT3G02870.3	Inositol monophosphatase family protein 	LOC_Os02g07350.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	NA	NA
PtpAffx.215549.1.S1_at	R	R	pmrna29809	pmrna29809	NA	NA	P45083	Putative esterase HI_1161	AT1G48320.1	Thioesterase superfamily protein 	LOC_Os05g04660.1	"thioesterase family protein, putative, expressed"	Medtr2g052490.1	Phenylacetic acid degradation-related protein 	NA	NA	NA
PtpAffx.215550.1.S1_at	R	R	pmrna29810	pmrna29810	NA	NA	Q98E66	UPF0187 protein mll4386	NA	NA	LOC_Os03g01570.2	expressed protein	NA	NA	NA	NA	NA
PtpAffx.215552.1.S1_at	R	R	pmrna29812	pmrna29812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215554.1.S1_at	R	R	pmrna29814	pmrna29814	NA	NA	P96709	Uncharacterized MFS-type transporter ydgK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215556.1.S1_at	R	R	pmrna29816	pmrna29816	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215558.1.S1_at	R	R	pmrna29821	pmrna29821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215593.1.S1_at	R	R	pmrna29877	pmrna29877	scaffold_19:10593887-10594917(+) (10)	NA	Q39030	Serine/threonine-protein kinase AtPK2/AtPK19	AT3G08720.2	serine/threonine protein kinase 2 	LOC_Os03g21620.1	"AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g043340.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	NA	NA	NA
PtpAffx.215602.1.S1_at	R	R	pmrna29893	pmrna29893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215606.1.S1_at	R	R	pmrna29897	pmrna29897	NA	NA	Q51948	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215607.1.S1_s_at	R	R	pmrna29898	pmrna29898	NA	NA	NA	NA	NA	NA	LOC_Os04g16794.1	hypothetical protein	Medtr7g062310.1	hypothetical protein 	NA	NA	NA
PtpAffx.215608.1.S1_s_at	R	R	pmrna29899	pmrna29899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215611.1.S1_at	R	R	pmrna29902	pmrna29902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215612.1.S1_at	R	R	pmrna29903	pmrna29903	NA	NA	A9BP19	Peptidyl-tRNA hydrolase	AT1G18440.1	Peptidyl-tRNA hydrolase family protein 	LOC_Os01g49900.1	"peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed"	Medtr7g093400.1	Peptidyl-tRNA hydrolase 	NA	NA	NA
PtpAffx.215613.1.S1_at	R	R	pmrna29904	pmrna29904	NA	NA	P00208	Ferredoxin	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215621.1.S1_at	R	R	pmrna29912	pmrna29912	NA	NA	Q01856	Uncharacterized HTH-type transcriptional regulator RHOS4_30730	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215624.1.S1_at	R	R	pmrna29916	pmrna29916	NA	NA	Q9Z3R0	Rhizobactin siderophore biosynthesis protein rhbC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215626.1.S1_at	R	R	pmrna29918	pmrna29918	NA	NA	Q06861	Putative virulence-regulating 38 kDa protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215629.1.S1_at	R	R	pmrna29921	pmrna29921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215635.1.S1_at	R	R	pmrna29929	pmrna29929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215637.1.S1_at	R	R	pmrna29931	pmrna29931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215644.1.S1_at	R	R	pmrna29941	pmrna29941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215645.1.S1_at	R	R	pmrna29942	pmrna29942	NA	NA	Q83E37	3-oxoacyl-[acyl-carrier-protein] synthase 2	AT1G74960.3	fatty acid biosynthesis 1 	LOC_Os04g36800.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	NA	NA	NA
PtpAffx.215646.1.S1_at	R	R	pmrna29943	pmrna29943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215647.1.S1_at	R	R	pmrna29944	pmrna29944	NA	NA	P31133	Putrescine-binding periplasmic protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215680.1.S1_at	R	R	pmrna30028	pmrna30028	NA	NA	P67233	Epimerase family protein Mb2239	AT2G21280.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g58790.4	"cell division inhibitor, putative, expressed"	Medtr4g097460.1	"NAD-dependent epimerase/dehydratase; Conserved hypothetical protein, YfcH "	NA	NA	NA
PtpAffx.215682.1.S1_at	R	R	pmrna30031	pmrna30031	NA	NA	Q9K0U7	Putative phospholipase A1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215683.1.S1_at	R	R	pmrna30032	pmrna30032	NA	NA	P44804	ATP-dependent DNA helicase rep	AT4G25120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g30980.1	"uvrD/REP helicase family protein, putative, expressed"	Medtr1g087020.1	UvrD/REP helicase; 	NA	NA	NA
PtpAffx.215684.1.S1_at	R	R	pmrna30033	pmrna30033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215685.1.S1_at	R	R	pmrna30034	pmrna30034	NA	NA	P56949	Putative malonate transporter	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215691.1.S1_at	R	R	pmrna30041	pmrna30041	NA	NA	Q8XW28	Urocanate hydratase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215692.1.S1_at	R	R	pmrna30042	pmrna30042	NA	NA	P37641	Uncharacterized HTH-type transcriptional regulator yhjC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215694.1.S1_at	R	R	pmrna30044	pmrna30044	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215695.1.S1_at	R	R	pmrna30045	pmrna30045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215704.1.S1_at	R	R	pmrna30055	pmrna30055	NA	NA	Q84H41	Sulfoacetaldehyde acetyltransferase	NA	NA	LOC_Os02g30630.2	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr2g032870.1	"Thiamine pyrophosphate enzyme, central region "	NA	NA	NA
PtpAffx.215705.1.S1_at	R	R	pmrna30056	pmrna30056	NA	NA	Q32JJ5	Lon protease	AT5G47040.1	lon protease 2 	LOC_Os09g36300.4	"OsLonP4 - Putative Lon protease homologue, expressed"	Medtr5g014000.1	"AAA ATPase, central region "	NA	NA	NA
PtpAffx.215707.1.S1_at	R	R	pmrna30059	pmrna30059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215708.1.S1_at	R	R	pmrna30060	pmrna30060	NA	NA	P0ABJ8	Cytochrome o ubiquinol oxidase protein CyoD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215710.1.S1_at	R	R	pmrna30062	pmrna30062	NA	NA	Q1LFB1	C4-dicarboxylate transport protein 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215718.1.S1_at	R	R	pmrna30073	pmrna30073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215720.1.S1_at	R	R	pmrna30077	pmrna30077	NA	NA	P19593	Probable reverse transcriptase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215721.1.S1_at	R	R	pmrna30078	pmrna30078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215726.1.S1_at	R	R	pmrna30083	pmrna30083	NA	NA	Q9HDX3	AB hydrolase superfamily protein B1A11.02	AT5G16080.1	carboxyesterase 17 	LOC_Os09g28660.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr3g148100.1	Alpha/beta hydrolase fold-3 	NA	NA	NA
PtpAffx.215727.1.S1_at	R	R	pmrna30084	pmrna30084	NA	NA	P17888	Primosomal protein N'	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215728.1.S1_at	R	R	pmrna30085	pmrna30085	NA	NA	O52485	Bifunctional protein putA	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.2	"aldehyde dehydrogenase, putative, expressed"	Medtr1g017100.1	"NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative "	NA	NA	NA
PtpAffx.215765.1.S1_at	R	R	pmrna30145	pmrna30145	NA	NA	Q9KVD1	Coenzyme A biosynthesis bifunctional protein CoaBC	AT3G18030.1	HAL3-like protein A 	LOC_Os06g09910.2	"phosphopantothenoylcysteine decarboxylase, putative, expressed"	Medtr8g150970.1	Flavoprotein 	NA	NA	NA
PtpAffx.215766.1.S1_at	R	R	pmrna30146	pmrna30146	NA	NA	A9BN39	CTP synthase	AT3G12670.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr2g080630.1	CTP synthase 	NA	NA	NA
PtpAffx.215771.1.S1_at	R	R	pmrna30152	pmrna30152	NA	NA	P0A045	Transposase for insertion sequence-like element IS431mec	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215772.1.S1_at	R	R	pmrna30154	pmrna30154	NA	NA	P33349	Uncharacterized protein yehM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215775.1.S1_at	R	R	pmrna30160	pmrna30160	NA	NA	Q9KWS5	2-aminomuconic 6-semialdehyde dehydrogenase	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os02g49720.3	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	NA	NA	NA
PtpAffx.215778.1.S1_at	R	R	pmrna30163	pmrna30163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215780.1.S1_at	R	R	pmrna30165	pmrna30165	NA	NA	Q9Z3Q5	Rhizobactin receptor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215793.1.S1_at	R	R	pmrna30184	pmrna30184	NA	NA	Q33300	Photosystem II reaction center protein Z	ATCG00300.1	YCF9 	LOC_Os04g16876.1	"photosystem II reaction center protein Z, putative"	Medtr8g065570.1	Photosystem II protein PsbZ 	NA	NA	NA
PtpAffx.215793.1.S1_x_at	R	R	pmrna30184	pmrna30184	NA	NA	Q33300	Photosystem II reaction center protein Z	ATCG00300.1	YCF9 	LOC_Os04g16876.1	"photosystem II reaction center protein Z, putative"	Medtr8g065570.1	Photosystem II protein PsbZ 	NA	NA	NA
PtpAffx.2158.1.S1_at	R	R	BU833317	BU833317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215820.1.S1_at	R	R	pmrna30232	pmrna30232	scaffold_4:15450412-15450985(-) (10)	NA	Q9CA40	Nudix hydrolase 1	AT1G68760.1	nudix hydrolase  1 	NA	NA	Medtr5g071730.1	NUDIX hydrolase 	NA	NA	NA
PtpAffx.215828.1.S1_at	R	R	pmrna30244	pmrna30244	NA	NA	P16942	Transposase for insertion sequence element IS629	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215831.1.S1_at	R	R	pmrna30247	pmrna30247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215832.1.S1_at	R	R	pmrna30248	pmrna30248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215833.1.S1_at	R	R	pmrna30249	pmrna30249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215834.1.S1_at	R	R	pmrna30250	pmrna30250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215835.1.S1_at	R	R	pmrna30251	pmrna30251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215837.1.S1_at	R	R	pmrna30253	pmrna30253	NA	NA	P37676	"2,3-diketo-L-gulonate-binding periplasmic protein yiaO"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215839.1.S1_at	R	R	pmrna30255	pmrna30255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215840.1.S1_at	R	R	pmrna30256	pmrna30256	NA	NA	P20576	Anthranilate synthase component II	AT5G57890.1	Glutamine amidotransferase type 1 family protein 	LOC_Os03g50880.1	"class I glutamine amidotransferase, putative, expressed"	Medtr1g121260.1	Anthranilate synthase component II/delta crystallin 	NA	NA	NA
PtpAffx.215841.1.S1_at	R	R	pmrna30257	pmrna30257	NA	NA	A9BS05	Anthranilate phosphoribosyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215842.1.S1_at	R	R	pmrna30258	pmrna30258	NA	NA	A9BS06	Indole-3-glycerol phosphate synthase	AT5G48220.3	Aldolase-type TIM barrel family protein 	LOC_Os04g39270.1	"indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed"	Medtr5g091460.1	"Indole-3-glycerol phosphate synthase; TonB box, N-terminal; "	NA	NA	NA
PtpAffx.215843.1.S1_at	R	R	pmrna30259	pmrna30259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215844.1.S1_at	R	R	pmrna30260	pmrna30260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215845.1.S1_at	R	R	pmrna30261	pmrna30261	NA	NA	P32483	Para-aminobenzoate synthase	AT2G28880.1	para-aminobenzoate (PABA) synthase family protein 	LOC_Os06g48620.1	"4-amino-4-deoxychorismate synthase, putative, expressed"	Medtr1g121290.1	Anthranilate synthase component I and chorismate binding protein 	NA	NA	NA
PtpAffx.215846.1.S1_at	R	R	pmrna30262	pmrna30262	NA	NA	Q9F8R8	Transcriptional regulator hosA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215849.1.S1_at	R	R	pmrna30266	pmrna30266	NA	NA	Q6GIX1	Probable cadmium-transporting ATPase	AT2G19110.1	heavy metal atpase 4 	LOC_Os02g10290.1	"copper-transporting ATPase, putative, expressed"	Medtr2g041260.1	Cof protein; Heavy metal translocating P-type ATPase 	NA	NA	NA
PtpAffx.215856.1.S1_at	R	R	pmrna30279	pmrna30279	NA	NA	P23877	Ferric enterobactin transport system permease protein fepG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215857.1.S1_x_at	R	R	pmrna30280	pmrna30280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215858.1.S1_s_at	R	R	pmrna30281	pmrna30281	NA	NA	Q6ENR3	Putative uncharacterized protein ycf15	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215901.1.S1_at	R	R	pmrna30362	pmrna30362	scaffold_5:927777-929229(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215910.1.S1_at	R	R	pmrna30375	pmrna30375	scaffold_5:998259-998794(+) (11)//scaffold_81:37110-37629(-) (10)	NA	Q9SYJ2	Probable glycerol-3-phosphate acyltransferase 3	AT4G01950.1	glycerol-3-phosphate acyltransferase 3 	LOC_Os11g45400.1	"glycerol-3-phosphate acyltransferase, putative, expressed"	Medtr1g106370.1	Phospholipid/glycerol acyltransferase 	NA	NA	NA
PtpAffx.215919.1.S1_at	R	R	pmrna30390	pmrna30390	NA	NA	B1M6P0	Succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215920.1.S1_at	R	R	pmrna30391	pmrna30391	NA	NA	P38942	4-hydroxybutyrate coenzyme A transferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215921.1.S1_at	R	R	pmrna30392	pmrna30392	NA	NA	P77467	Probable enoyl-CoA hydratase paaG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215922.1.S1_at	R	R	pmrna30396	pmrna30396	NA	NA	Q9WWR1	Ubiquinol oxidase subunit 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215923.1.S1_at	R	R	pmrna30397	pmrna30397	NA	NA	Q01856	Uncharacterized HTH-type transcriptional regulator RHOS4_30730	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215924.1.S1_at	R	R	pmrna30398	pmrna30398	NA	NA	Q01856	Uncharacterized HTH-type transcriptional regulator RHOS4_30730	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215925.1.S1_at	R	R	pmrna30399	pmrna30399	NA	NA	Q8GP19	Swarming motility regulation sensor protein rssA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215927.1.S1_at	R	R	pmrna30402	pmrna30402	NA	NA	Q6P1K8	General transcription factor IIH subunit 2-like protein	AT1G05055.1	general transcription factor II H2 	LOC_Os04g42990.1	"suppressor of stem-loop protein 1, putative, expressed"	Medtr7g106470.1	"von Willebrand factor, type A; Zinc finger, C2H2-type "	NA	NA	NA
PtpAffx.215928.1.S1_at	R	R	pmrna30403	pmrna30403	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215929.1.S1_at	R	R	pmrna30404	pmrna30404	NA	NA	Q6B4Z3	Histone demethylase UTY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215937.1.S1_at	R	R	pmrna30413	pmrna30413	NA	NA	P43672	ABC transporter ATP-binding protein uup	AT5G64840.1	general control non-repressible 5 	LOC_Os11g39020.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g144690.1	AAA ATPase 	NA	NA	NA
PtpAffx.215968.1.S1_at	R	R	pmrna30461	pmrna30461	NA	NA	A1VN15	"Coproporphyrinogen-III oxidase, aerobic"	AT1G03475.1	Coproporphyrinogen III oxidase 	LOC_Os04g52130.1	"coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed"	Medtr5g106440.1	Coproporphyrinogen III oxidase 	NA	NA	NA
PtpAffx.215969.1.S1_at	R	R	pmrna30462	pmrna30462	NA	NA	Q8XXC4	Phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215971.1.S1_at	R	R	pmrna30465	pmrna30465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215972.1.S1_at	R	R	pmrna30466	pmrna30466	NA	NA	Q8FJN9	Putative cardiolipin synthase ybhO	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215974.1.S1_at	R	R	pmrna30468	pmrna30468	NA	NA	P55561	Uncharacterized outer-membrane protein y4mB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215975.1.S1_at	R	R	pmrna30469	pmrna30469	NA	NA	P0AE12	AMP nucleosidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215978.1.S1_at	R	R	pmrna30473	pmrna30473	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.215983.1.S1_at	R	R	pmrna30479	pmrna30479	NA	NA	P0A251	Alkyl hydroperoxide reductase subunit C	AT5G06290.1	2-cysteine peroxiredoxin B 	LOC_Os02g33450.2	"peroxiredoxin, putative, expressed"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.216047.1.S1_at	R	R	pmrna30605	pmrna30605	NA	NA	P23669	Threonine synthase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216051.1.S1_at	R	R	pmrna30610	pmrna30610	NA	NA	P54917	Conjugal transfer protein trbI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216054.1.S1_at	R	R	pmrna30614	pmrna30614	NA	NA	Q59643	Delta-aminolevulinic acid dehydratase	AT1G69740.2	Aldolase superfamily protein 	LOC_Os06g49110.3	"delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed"	Medtr3g100480.1	Delta-aminolevulinic acid dehydratase 	NA	NA	NA
PtpAffx.216056.1.S1_at	R	R	pmrna30616	pmrna30616	NA	NA	Q57855	Uncharacterized ABC transporter ATP-binding protein MJ0412	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os03g46740.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	NA	NA
PtpAffx.216057.1.S1_at	R	R	pmrna30617	pmrna30617	NA	NA	Q57306	Probable ABC transporter permease protein HI_0355	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216058.1.S1_at	R	R	pmrna30618	pmrna30618	NA	NA	P74996	Glutamate uptake regulatory protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216059.1.S1_at	R	R	pmrna30619	pmrna30619	NA	NA	P39376	Uncharacterized HTH-type transcriptional regulator yjiE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216060.1.S1_at	R	R	pmrna30620	pmrna30620	NA	NA	P96110	Glutamate dehydrogenase	AT3G03910.1	glutamate dehydrogenase 3 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	NA	NA	NA
PtpAffx.216061.1.S1_at	R	R	pmrna30621	pmrna30621	NA	NA	Q9ZF60	Glutamate/aspartate periplasmic-binding protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216069.1.S1_at	R	R	pmrna30630	pmrna30630	NA	NA	P77161	2-hydroxy-3-oxopropionate reductase	AT4G29120.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os01g53910.1	"dehydrogenase, putative, expressed"	Medtr4g159920.1	"6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal-like; "	NA	NA	NA
PtpAffx.216070.1.S1_at	R	R	pmrna30631	pmrna30631	NA	NA	P70788	Putative hydroxypyruvate reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216071.1.S1_at	R	R	pmrna30632	pmrna30632	NA	NA	O05118	Pyruvate kinase	AT4G26390.1	Pyruvate kinase family protein 	LOC_Os04g58110.1	"pyruvate kinase, putative, expressed"	Medtr7g120940.1	Pyruvate kinase; ; ; 	NA	NA	NA
PtpAffx.216072.1.S1_at	R	R	pmrna30633	pmrna30633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216073.1.S1_at	R	R	pmrna30634	pmrna30634	NA	NA	P0AFW7	Regulator of nucleoside diphosphate kinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216074.1.S1_at	R	R	pmrna30636	pmrna30636	NA	NA	Q1LK81	Thymidylate synthase	AT4G34570.1	thymidylate synthase 2 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	NA	NA	NA
PtpAffx.216075.1.S1_at	R	R	pmrna30638	pmrna30638	NA	NA	A4GYS0	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic"	ATCG00500.1	acetyl-CoA carboxylase carboxyl transferase subunit beta 	NA	NA	Medtr8g071040.1	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, putative "	NA	NA	NA
PtpAffx.216076.1.S1_at	R	R	pmrna30639	pmrna30639	NA	NA	Q1LLR6	Translation initiation factor IF-2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216109.1.S1_s_at	R	R	pmrna30692	pmrna30692	NA	NA	A4GYW5	Cytochrome c biogenesis protein ccsA	ATCG01040.1	Cytochrome C assembly protein 	LOC_Os06g46434.1	"cytochrome c biogenesis protein ccsA, putative"	Medtr4g022890.1	Cytochrome c assembly protein 	NA	NA	NA
PtpAffx.216115.1.S1_at	R	R	pmrna30699	pmrna30699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216116.1.S1_at	R	R	pmrna30700	pmrna30700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216118.1.S1_at	R	R	pmrna30703	pmrna30703	NA	NA	P12580	Vanillate O-demethylase oxidoreductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216121.1.S1_at	R	R	pmrna30707	pmrna30707	NA	NA	P45609	Phosphate regulon sensor protein phoR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216122.1.S1_at	R	R	pmrna30708	pmrna30708	NA	NA	Q0BGI1	Polyphosphate kinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216123.1.S1_at	R	R	pmrna30709	pmrna30709	NA	NA	Q87AD6	Beta-lactamase hydrolase-like protein	AT1G06130.2	glyoxalase 2-4 	LOC_Os01g47690.2	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	NA	NA	NA
PtpAffx.216124.1.S1_at	R	R	pmrna30710	pmrna30710	NA	NA	Q9ZFF8	Protein-export membrane protein secD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216154.1.S1_at	R	R	pmrna30765	pmrna30765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216155.1.S1_at	R	R	pmrna30766	pmrna30766	NA	NA	Q8XBS3	Transcriptional regulatory protein qseB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216156.1.S1_at	R	R	pmrna30767	pmrna30767	NA	NA	A9BQB0	Protein recA	AT1G79050.1	recA DNA recombination family protein 	LOC_Os01g67510.1	"recA protein, putative, expressed"	Medtr2g046210.1	RecA bacterial DNA recombination protein 	NA	NA	NA
PtpAffx.216157.1.S1_at	R	R	pmrna30768	pmrna30768	NA	NA	O86082	Regulatory protein recX	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216158.1.S1_at	R	R	pmrna30769	pmrna30769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216161.1.S1_at	R	R	pmrna30773	pmrna30773	NA	NA	Q9HT80	DNA polymerase I	AT4G32700.2	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding 	LOC_Os12g19370.1	"DNA polymerase I family protein, expressed"	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.216162.1.S1_at	R	R	pmrna30774	pmrna30774	NA	NA	P00393	NADH dehydrogenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216166.1.S1_at	R	R	pmrna30780	pmrna30780	NA	NA	P34802	"Geranylgeranyl pyrophosphate synthase 1, chloroplastic"	AT4G36810.1	geranylgeranyl pyrophosphate synthase 1 	LOC_Os01g14630.1	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	NA	NA	NA
PtpAffx.216171.1.S1_at	R	R	pmrna30789	pmrna30789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216172.1.S1_at	R	R	pmrna30790	pmrna30790	NA	NA	P0AAV4	Uncharacterized protein ybgJ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216173.1.S1_at	R	R	pmrna30791	pmrna30791	NA	NA	B2AG45	Pyrrolidone-carboxylate peptidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216174.1.S1_at	R	R	pmrna30792	pmrna30792	NA	NA	Q0SFW6	Methionine import ATP-binding protein MetN 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216177.1.S1_at	R	R	pmrna30795	pmrna30795	NA	NA	P77432	Autoinducer 2 kinase lsrK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216183.1.S1_at	R	R	pmrna30802	pmrna30802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216184.1.S1_at	R	R	pmrna30803	pmrna30803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216185.1.S1_at	R	R	pmrna30804	pmrna30804	NA	NA	P43783	Glutathione reductase	AT3G54660.1	glutathione reductase 	LOC_Os10g28000.1	"glutathione reductase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.216186.1.S1_at	R	R	pmrna30805	pmrna30805	NA	NA	P70795	Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216187.1.S1_at	R	R	pmrna30806	pmrna30806	NA	NA	P0AG37	Homoserine/homoserine lactone efflux protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216209.1.S1_at	R	R	pmrna30854	pmrna30854	scaffold_14:15145442-15145641(+) (10)	NA	Q9STG6	Deoxyuridine 5'-triphosphate nucleotidohydrolase	AT3G46940.1	DUTP-PYROPHOSPHATASE-LIKE 1 	LOC_Os03g46640.1	"deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.216218.1.S1_at	R	R	pmrna30868	pmrna30868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216219.1.S1_at	R	R	pmrna30869	pmrna30869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216220.1.S1_at	R	R	pmrna30870	pmrna30870	NA	NA	O06434	Biopolymer transport protein exbD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216221.1.S1_at	R	R	pmrna30871	pmrna30871	NA	NA	P0C7L9	Biopolymer transport protein exbB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216222.1.S1_at	R	R	pmrna30872	pmrna30872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216223.1.S1_at	R	R	pmrna30873	pmrna30873	NA	NA	P03643	Spike protein G	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216224.1.S1_at	R	R	pmrna30874	pmrna30874	NA	NA	P03641	Capsid protein F	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216227.1.S1_at	R	R	pmrna30879	pmrna30879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216237.1.S1_at	R	R	pmrna30891	pmrna30891	NA	NA	P52325	RNA polymerase sigma factor rpoD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216239.1.S1_at	R	R	pmrna30893	pmrna30893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216241.1.S1_at	R	R	pmrna30895	pmrna30895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216242.1.S1_at	R	R	pmrna30896	pmrna30896	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216247.1.S1_at	R	R	pmrna30901	pmrna30901	NA	NA	P19319	Respiratory nitrate reductase 2 alpha chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216248.1.S1_at	R	R	pmrna30902	pmrna30902	NA	NA	Q1LJR3	Aspartate carbamoyltransferase	AT3G20330.1	PYRIMIDINE B 	LOC_Os08g15030.1	"aspartate carbamoyltransferase, putative, expressed"	Medtr5g101000.1	Aspartate carbamoyltransferase 	NA	NA	NA
PtpAffx.216250.1.S1_at	R	R	pmrna30905	pmrna30905	NA	NA	O94562	Uncharacterized aminotransferase C1771.03c	AT3G22200.2	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g10510.2	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	NA	NA
PtpAffx.216253.1.S1_at	R	R	pmrna30909	pmrna30909	NA	NA	P58579	Glutathione synthetase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216254.1.S1_at	R	R	pmrna30910	pmrna30910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216260.1.S1_at	R	R	pmrna30917	pmrna30917	NA	NA	Q8Y3C8	Tyrosine recombinase xerC 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216263.1.S1_at	R	R	pmrna30920	pmrna30920	NA	NA	P77318	Uncharacterized sulfatase ydeN	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216264.1.S1_at	R	R	pmrna30921	pmrna30921	NA	NA	C5CNS9	Peptide methionine sulfoxide reductase msrB	AT1G53670.1	methionine sulfoxide reductase B 1 	LOC_Os06g27760.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr4g121860.1	Mss4-like 	NA	NA	NA
PtpAffx.216265.1.S1_at	R	R	pmrna30922	pmrna30922	NA	NA	A9BZN0	Probable intracellular septation protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216272.1.S1_at	R	R	pmrna30930	pmrna30930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216275.1.S1_at	R	R	pmrna30938	pmrna30938	NA	NA	P0AFM1	Paraquat-inducible protein A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216276.1.S1_at	R	R	pmrna30939	pmrna30939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216283.1.S1_at	R	R	pmrna30950	pmrna30950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216284.1.S1_at	R	R	pmrna30951	pmrna30951	NA	NA	P79273	"Short-chain specific acyl-CoA dehydrogenase, mitochondrial"	NA	NA	LOC_Os05g03480.5	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.216327.1.S1_at	R	R	pmrna31038	pmrna31038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216328.1.S1_at	R	R	pmrna31039	pmrna31039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216329.1.S1_at	R	R	pmrna31040	pmrna31040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216330.1.S1_at	R	R	pmrna31041	pmrna31041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216334.1.S1_at	R	R	pmrna31047	pmrna31047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216335.1.S1_at	R	R	pmrna31048	pmrna31048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216337.1.S1_at	R	R	pmrna31051	pmrna31051	NA	NA	Q99390	Uncharacterized 31.7 kDa protein in traX-finO intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216338.1.S1_at	R	R	pmrna31052	pmrna31052	NA	NA	Q8XZZ5	Amino-acid acetyltransferase	AT2G22910.1	N-acetyl-l-glutamate synthase 1 	LOC_Os03g31690.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g015470.1	Amino-acid N-acetyltransferase (ArgA) 	NA	NA	NA
PtpAffx.216340.1.S1_at	R	R	pmrna31054	pmrna31054	NA	NA	A9BMR1	UPF0317 protein Daci_4977	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216345.1.S1_at	R	R	pmrna31061	pmrna31061	NA	NA	P76250	HTH-type transcriptional regulator DmlR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216346.1.S1_at	R	R	pmrna31062	pmrna31062	scaffold_1:6377759-6378208(+) (11)	NA	O65351	Subtilisin-like protease	AT3G14067.1	Subtilase family protein 	LOC_Os04g47160.1	"OsSub44 - Putative Subtilisin homologue, expressed"	Medtr5g011390.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	NA	NA	NA
PtpAffx.216353.1.S1_at	R	R	pmrna31072	pmrna31072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216366.1.S1_at	R	R	pmrna31087	pmrna31087	scaffold_13:14024222-14024373(-) (11)	NA	Q0ZJ21	Photosystem I P700 chlorophyll a apoprotein A2	ATCG00340.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38234.1	"photosystem I P700 chlorophyll a apoprotein A2, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.216415.1.S1_at	R	R	pmrna31180	pmrna31180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216416.1.S1_at	R	R	pmrna31181	pmrna31181	NA	NA	P09348	Motility protein A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216417.1.S1_at	R	R	pmrna31182	pmrna31182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21642.1.S1_at	R	R	AJ490333.1	AJ490333.1	NA	NA	Q40392	TMV resistance protein N	AT4G16950.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g012470.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.21642.1.S1_x_at	R	R	AJ490333.1	AJ490333.1	NA	NA	Q40392	TMV resistance protein N	AT4G16950.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g012470.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.216420.1.S1_at	R	R	pmrna31189	pmrna31189	NA	NA	A1WGR0	Phosphoenolpyruvate carboxylase	AT1G68750.1	phosphoenolpyruvate carboxylase 4 	LOC_Os01g02050.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g111660.1	Phosphoenolpyruvate carboxylase 	NA	NA	NA
PtpAffx.216424.1.S1_at	R	R	pmrna31193	pmrna31193	NA	NA	Q8G2M6	Efflux pump membrane transporter BepE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216425.1.S1_at	R	R	pmrna31194	pmrna31194	NA	NA	P51026	Insertion element IS2A uncharacterized 48.2 kDa protein	NA	NA	NA	NA	Medtr2g122220.1	"Transposase IS3/IS911; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.216426.1.S1_at	R	R	pmrna31195	pmrna31195	NA	NA	P51026	Insertion element IS2A uncharacterized 48.2 kDa protein	NA	NA	NA	NA	Medtr2g122220.1	"Transposase IS3/IS911; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.216428.1.S1_at	R	R	pmrna31200	pmrna31200	NA	NA	A9BNJ8	GTP-binding protein lepA	AT5G08650.1	Small GTP-binding protein 	LOC_Os02g06300.1	"GTP-binding protein lepA, putative, expressed"	Medtr7g009110.1	"Translation factor; Elongation factor G, III and V "	NA	NA	NA
PtpAffx.216430.1.S1_at	R	R	pmrna31202	pmrna31202	NA	NA	P0A150	Uncharacterized protein in gidB 3'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216433.1.S1_at	R	R	pmrna31205	pmrna31205	NA	NA	Q9I2V5	Aconitate hydratase 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216434.1.S1_at	R	R	pmrna31206	pmrna31206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216436.1.S1_at	R	R	pmrna31212	pmrna31212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216437.1.S1_at	R	R	pmrna31213	pmrna31213	NA	NA	O31608	Putative murein lytic transglycosylase yjbJ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216439.1.S1_at	R	R	pmrna31215	pmrna31215	NA	NA	P0CD29	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043710.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.216443.1.S1_at	R	R	pmrna31222	pmrna31222	NA	NA	P44487	Uxu operon regulator	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216444.1.S1_at	R	R	pmrna31223	pmrna31223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216445.1.S1_at	R	R	pmrna31224	pmrna31224	NA	NA	P0AEP9	Glycolate oxidase subunit glcD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216446.1.S1_at	R	R	pmrna31225	pmrna31225	NA	NA	Q5KVX9	2-succinylbenzoate--CoA ligase	AT1G20480.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g24530.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.216448.1.S1_at	R	R	pmrna31227	pmrna31227	NA	NA	P0A2I5	DNA topoisomerase 4 subunit B	AT5G04130.1	DNA GYRASE B2 	LOC_Os01g16290.2	"DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed"	Medtr7g106830.1	"ATP-binding region, ATPase-like "	NA	NA	NA
PtpAffx.216451.1.S1_at	R	R	pmrna31231	pmrna31231	NA	NA	A0PNM4	RNA polymerase sigma factor sigK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216461.1.S1_at	R	R	pmrna31242	pmrna31242	NA	NA	Q9HXZ1	DNA polymerase III subunit alpha	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216462.1.S1_at	R	R	pmrna31245	pmrna31245	NA	NA	P60046	Insertion element IS150 uncharacterized 19.7 kDa protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216463.1.S1_at	R	R	pmrna31246	pmrna31246	NA	NA	P19769	Putative transposase InsK for insertion sequence element IS150	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216466.1.S1_at	R	R	pmrna31249	pmrna31249	NA	NA	Q46829	6-phospho-beta-glucosidase BglA	AT2G44460.1	beta glucosidase 28 	LOC_Os03g49610.1	"Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed"	Medtr8g146400.1	"Glycoside hydrolase, family 1 "	NA	NA	NA
PtpAffx.216467.1.S1_at	R	R	pmrna31250	pmrna31250	NA	NA	P0ABY4	Flavodoxin-2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216469.1.S1_at	R	R	pmrna31253	pmrna31253	NA	NA	P32176	Formate dehydrogenase-O major subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216472.1.S1_at	R	R	pmrna31256	pmrna31256	NA	NA	P37610	Alpha-ketoglutarate-dependent taurine dioxygenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216473.1.S1_at	R	R	pmrna31257	pmrna31257	NA	NA	Q46799	Xanthine dehydrogenase molybdenum-binding subunit	AT4G34890.1	xanthine dehydrogenase 1 	LOC_Os03g31550.2	"aldehyde oxidase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.216475.1.S1_at	R	R	pmrna31259	pmrna31259	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216476.1.S1_at	R	R	pmrna31260	pmrna31260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216477.1.S1_at	R	R	pmrna31261	pmrna31261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216478.1.S1_at	R	R	pmrna31262	pmrna31262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216479.1.S1_at	R	R	pmrna31263	pmrna31263	NA	NA	A9BNG5	Chaperone protein dnaK	AT5G09590.1	mitochondrial HSO70 2 	LOC_Os03g02260.1	"DnaK family protein, putative, expressed"	Medtr2g010100.1	Chaperone DnaK 	NA	NA	NA
PtpAffx.216482.1.S1_at	R	R	pmrna31267	pmrna31267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216504.1.S1_at	R	R	pmrna31324	pmrna31324	scaffold_18:6638561-6638773(-) (9)	NA	NA	NA	NA	NA	LOC_Os08g16240.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	Medtr2g021830.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.216506.1.S1_at	R	R	pmrna31330	pmrna31330	NA	NA	C0SP82	Probable oxidoreductase yoaE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216508.1.S1_at	R	R	pmrna31332	pmrna31332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216509.1.S1_at	R	R	pmrna31333	pmrna31333	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216510.1.S1_at	R	R	pmrna31334	pmrna31334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216511.1.S1_at	R	R	pmrna31335	pmrna31335	NA	NA	Q9K8K8	Protein ArsC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216515.1.S1_at	R	R	pmrna31341	pmrna31341	NA	NA	Q46821	Putative purine permease ygfU	AT2G05760.1	Xanthine/uracil permease family protein 	LOC_Os01g55500.3	"nucleobase-ascorbate transporter, putative, expressed"	Medtr3g109940.1	Xanthine/uracil/vitamin C permease 	NA	NA	NA
PtpAffx.216516.1.S1_at	R	R	pmrna31342	pmrna31342	NA	NA	P49322	Uncharacterized protein in cpoL 5'region (Fragment)	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216517.1.S1_at	R	R	pmrna31345	pmrna31345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216522.1.S1_at	R	R	pmrna31351	pmrna31351	NA	NA	A9BXL3	60 kDa chaperonin	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	NA	NA	NA
PtpAffx.216523.1.S1_at	R	R	pmrna31352	pmrna31352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216544.1.S1_at	R	R	pmrna31390	pmrna31390	NA	NA	P36555	Phosphoethanolamine transferase eptA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216545.1.S1_at	R	R	pmrna31391	pmrna31391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216546.1.S1_at	R	R	pmrna31392	pmrna31392	NA	NA	P29369	Glycerol metabolism activator	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216549.1.S1_at	R	R	pmrna31395	pmrna31395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216552.1.S1_at	R	R	pmrna31399	pmrna31399	NA	NA	P0C6R1	Vibriobactin receptor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216553.1.S1_at	R	R	pmrna31400	pmrna31400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216554.1.S1_at	R	R	pmrna31401	pmrna31401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216555.1.S1_at	R	R	pmrna31402	pmrna31402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216556.1.S1_at	R	R	pmrna31403	pmrna31403	NA	NA	P76628	Putative uncharacterized transporter ygaY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216557.1.S1_at	R	R	pmrna31404	pmrna31404	NA	NA	P42179	Bkd operon transcriptional regulator	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216558.1.S1_at	R	R	pmrna31405	pmrna31405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216561.1.S1_at	R	R	pmrna31409	pmrna31409	NA	NA	Q47H39	Potassium-transporting ATPase B chain	AT1G63440.1	heavy metal atpase 5 	LOC_Os06g45500.1	"copper-transporting ATPase, putative, expressed"	Medtr4g089740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	NA	NA	NA
PtpAffx.216605.1.S1_at	R	R	pmrna31505	pmrna31505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216611.1.S1_at	R	R	pmrna31514	pmrna31514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216614.1.S1_at	R	R	pmrna31517	pmrna31517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216615.1.S1_at	R	R	pmrna31518	pmrna31518	NA	NA	P27675	Glutamine transport ATP-binding protein GlnQ	AT1G67940.1	non-intrinsic ABC protein 3 	LOC_Os06g48060.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g154730.1	ABC transporter related 	NA	NA	NA
PtpAffx.216619.1.S1_at	R	R	pmrna31522	pmrna31522	NA	NA	P43701	DNA gyrase subunit B	AT3G10270.1	DNA GYRASE B1 	LOC_Os01g16290.2	"DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed"	Medtr7g106830.1	"ATP-binding region, ATPase-like "	NA	NA	NA
PtpAffx.216635.1.S1_at	R	R	pmrna31546	pmrna31546	scaffold_1:23011425-23011510(-) (11)	NA	Q42435	"Capsanthin/capsorubin synthase, chromoplast"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr2g107590.1	Lycopene beta and epsilon cyclase 	NA	NA	NA
PtpAffx.216635.1.S1_s_at	R	R	pmrna31546	pmrna31546	scaffold_1:23011499-23012015(-) (11)	NA	Q42435	"Capsanthin/capsorubin synthase, chromoplast"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr2g107590.1	Lycopene beta and epsilon cyclase 	NA	NA	NA
PtpAffx.216660.1.S1_at	R	R	pmrna31592	pmrna31592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216662.1.S1_at	R	R	pmrna31595	pmrna31595	NA	NA	A9BUK8	D-alanine--D-alanine ligase	AT3G08840.3	D-alanine--D-alanine ligase family 	LOC_Os07g49110.1	"D-alanine--D-alanine ligase family, putative, expressed"	Medtr7g077430.2	"D-alanine--D-alanine ligase, N-terminal; ATP-grasp fold; ; "	NA	NA	NA
PtpAffx.216664.1.S1_at	R	R	pmrna31599	pmrna31599	NA	NA	P37731	Molybdenum transport system permease protein modB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216665.1.S1_at	R	R	pmrna31600	pmrna31600	NA	NA	Q51955	4-hydroxybenzoate transporter	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216666.1.S1_at	R	R	pmrna31603	pmrna31603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216667.1.S1_at	R	R	pmrna31604	pmrna31604	NA	NA	P95442	Hydroxydechloroatrazine ethylaminohydrolase	NA	NA	LOC_Os12g28270.2	"amidohydrolase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.216668.1.S1_at	R	R	pmrna31607	pmrna31607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216669.1.S1_x_at	R	R	pmrna31609	pmrna31609	NA	NA	P32035	Uncharacterized 6.8 kDa protein in trnL 3'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216671.1.S1_at	R	R	pmrna31611	pmrna31611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216672.1.S1_at	R	R	pmrna31612	pmrna31612	NA	NA	P76558	NADP-dependent malic enzyme	AT1G79750.1	NADP-malic enzyme 4 	LOC_Os01g09320.1	"NADP-dependent malic enzyme, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.216690.1.S1_at	R	R	pmrna31637	pmrna31637	NA	NA	Q11EE0	Ribosomal RNA large subunit methyltransferase N	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216692.1.S1_at	R	R	pmrna31640	pmrna31640	NA	NA	Q8UGX7	Peptide methionine sulfoxide reductase msrB	AT1G53670.1	methionine sulfoxide reductase B 1 	LOC_Os06g27760.2	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr2g026010.1	Mss4-like 	NA	NA	NA
PtpAffx.216693.1.S1_at	R	R	pmrna31641	pmrna31641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216694.1.S1_at	R	R	pmrna31642	pmrna31642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216696.1.S1_at	R	R	pmrna31644	pmrna31644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216699.1.S1_at	R	R	pmrna31648	pmrna31648	NA	NA	Q8GBW6	Methylmalonyl-CoA carboxyltransferase 12S subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216702.1.S1_at	R	R	pmrna31653	pmrna31653	NA	NA	P45167	ABC transporter ATP-binding protein uup-2	AT3G21230.1	4-coumarate:CoA ligase 5 	LOC_Os03g05780.1	"4-coumarate--CoA ligase-like 7, putative, expressed"	Medtr4g023340.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.21672.1.A1_at	R	R	DN484885	DN484885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216740.1.S1_at	R	R	pmrna31722	pmrna31722	NA	NA	P94363	Citrate/malate transporter	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216747.1.S1_at	R	R	pmrna31730	pmrna31730	NA	NA	P37641	Uncharacterized HTH-type transcriptional regulator yhjC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216748.1.S1_at	R	R	pmrna31732	pmrna31732	NA	NA	P07363	Chemotaxis protein CheA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216749.1.S1_at	R	R	pmrna31733	pmrna31733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216752.1.S1_at	R	R	pmrna31737	pmrna31737	NA	NA	P39812	Glutamate synthase [NADPH] large chain	AT5G04140.2	glutamate synthase 1 	LOC_Os01g48960.1	"glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	NA	NA	NA
PtpAffx.216754.1.S1_at	R	R	pmrna31739	pmrna31739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216756.1.S1_at	R	R	pmrna31741	pmrna31741	NA	NA	Q8YFI5	Na(+)/H(+) antiporter nhaA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216758.1.S1_at	R	R	pmrna31744	pmrna31744	NA	NA	Q9I0K9	Adenylosuccinate lyase	AT4G18440.1	L-Aspartase-like family protein 	LOC_Os03g19930.4	"adenylosuccinate lyase, putative, expressed"	Medtr7g111520.1	Fumarate lyase; Adenylosuccinate lyase 	NA	NA	NA
PtpAffx.216759.1.S1_at	R	R	pmrna31745	pmrna31745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216761.1.S1_at	R	R	pmrna31747	pmrna31747	NA	NA	P33409	Chaperone protein fimB/fhaD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216764.1.S1_at	R	R	pmrna31750	pmrna31750	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216765.1.S1_at	R	R	pmrna31751	pmrna31751	NA	NA	O34893	Putative enoyl-CoA hydratase/isomerase yngF	AT5G43280.1	"delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216770.1.S1_at	R	R	pmrna31757	pmrna31757	NA	NA	Q1LPG5	DNA mismatch repair protein mutS	AT4G17380.1	MUTS-like protein 4 	LOC_Os01g08540.1	"DNA mismatch repair protein MSH6-2, putative, expressed"	Medtr6g101960.1	"DNA mismatch repair protein, eukaryotic MSH2 "	NA	NA	NA
PtpAffx.216771.1.S1_at	R	R	pmrna31758	pmrna31758	NA	NA	Q1LPG5	DNA mismatch repair protein mutS	AT4G25540.1	homolog of DNA mismatch repair protein MSH3 	NA	NA	Medtr5g012980.1	MutS 1 protein 	NA	NA	NA
PtpAffx.216772.1.S1_at	R	R	pmrna31759	pmrna31759	NA	NA	Q01198	C alpha-dehydrogenase	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g33240.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr6g025640.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.216773.1.S1_at	R	R	pmrna31760	pmrna31760	NA	NA	A1W9H4	Peptide chain release factor 2	AT1G63770.5	Peptidase M1 family protein 	LOC_Os08g44860.1	"aminopeptidase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.216809.1.S1_at	R	R	pmrna31841	pmrna31841	NA	NA	Q1LPG5	DNA mismatch repair protein mutS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216813.1.S1_at	R	R	pmrna31847	pmrna31847	NA	NA	O87579	Penicillin-binding protein 1A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216814.1.S1_at	R	R	pmrna31848	pmrna31848	NA	NA	Q1LI79	Protein CyaY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216815.1.S1_at	R	R	pmrna31849	pmrna31849	NA	NA	P18769	Gliding motility regulatory protein	AT2G01830.1	CHASE domain containing histidine kinase protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216817.1.S1_at	R	R	pmrna31852	pmrna31852	NA	NA	Q02755	Methyl-accepting chemotaxis citrate transducer	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216819.1.S1_at	R	R	pmrna31854	pmrna31854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216822.1.S1_at	R	R	pmrna31857	pmrna31857	NA	NA	Q5L2G3	Uncharacterized oxidoreductase CzcO-like	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216823.1.S1_at	R	R	pmrna31859	pmrna31859	NA	NA	Q51858	Protein CbbQ	AT1G67120.1	ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding 	LOC_Os10g31864.1	conserved hypothetical protein	Medtr8g021940.1	Aldo/keto reductase; AAA ATPase 	NA	NA	NA
PtpAffx.216825.1.S1_at	R	R	pmrna31861	pmrna31861	NA	NA	P44881	Xaa-Pro aminopeptidase	AT1G09300.2	Metallopeptidase M24 family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216826.1.S1_at	R	R	pmrna31862	pmrna31862	NA	NA	P54956	Uncharacterized protein yxeQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216828.1.S1_at	R	R	pmrna31864	pmrna31864	NA	NA	Q0VSY7	Glutamate--cysteine ligase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216830.1.S1_at	R	R	pmrna31867	pmrna31867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216831.1.S1_at	R	R	pmrna31868	pmrna31868	NA	NA	Q9I310	Uncharacterized signaling protein PA1727	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216839.1.S1_at	R	R	pmrna31878	pmrna31878	NA	NA	A9C1U7	Trigger factor	AT5G55220.1	trigger factor type chaperone family protein 	LOC_Os06g20320.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g101240.1	"Bacterial trigger factor, C-terminal "	NA	NA	NA
PtpAffx.216840.1.S1_at	R	R	pmrna31880	pmrna31880	NA	NA	P21693	ATP-independent RNA helicase dbpA	AT4G16630.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os12g41715.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g134530.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; GUCT; ; "	NA	NA	NA
PtpAffx.216842.1.S1_at	R	R	pmrna31882	pmrna31882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216847.1.S1_at	R	R	pmrna31887	pmrna31887	NA	NA	Q9R9N4	Pyruvate dehydrogenase E1 component subunit beta	AT5G50850.1	Transketolase family protein 	LOC_Os08g42410.2	"transketolase, putative, expressed"	Medtr7g005080.1	Bacterial transketolase 	NA	NA	NA
PtpAffx.216849.1.S1_at	R	R	pmrna31889	pmrna31889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216850.1.S1_at	R	R	pmrna31890	pmrna31890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216851.1.S1_at	R	R	pmrna31891	pmrna31891	NA	NA	Q9ZHC9	Putative cation efflux system protein silA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216853.1.S1_x_at	R	R	pmrna31893	pmrna31893	scaffold_1:5716399-5716756(-) (11)//scaffold_1:5730938-5731295(-) (11)//scaffold_1:42209666-42210023(+) (10)//scaffold_1:43649713-43650070(-) (10)//scaffold_1:46900819-46901176(-) (11)//scaffold_17:292461-292818(-) (10)//scaffold_5:706625-706982(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216855.1.S1_s_at	R	R	pmrna31896	pmrna31896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216856.1.S1_at	R	R	pmrna31897	pmrna31897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216857.1.S1_at	R	R	pmrna31898	pmrna31898	NA	NA	P0A9T3	D-3-phosphoglycerate dehydrogenase	AT1G17745.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.2	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	NA	NA	NA
PtpAffx.216867.1.S1_at	R	R	pmrna31912	pmrna31912	NA	NA	Q21WN7	Protein tolB	NA	NA	NA	NA	Medtr4g145010.1	WD40-like Beta Propeller 	NA	NA	NA
PtpAffx.216869.1.S1_at	R	R	pmrna31914	pmrna31914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216870.1.S1_at	R	R	pmrna31915	pmrna31915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216872.1.S1_at	R	R	pmrna31917	pmrna31917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216873.1.S1_at	R	R	pmrna31918	pmrna31918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216875.1.S1_at	R	R	pmrna31920	pmrna31920	NA	NA	A9BP65	Prolyl-tRNA synthetase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216880.1.S1_at	R	R	pmrna31926	pmrna31926	NA	NA	B0RVL0	"dTDP-glucose 4,6-dehydratase"	AT1G53500.1	NAD-dependent epimerase/dehydratase family protein 	LOC_Os03g17000.4	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	NA	NA	NA
PtpAffx.216882.1.S1_at	R	R	pmrna31928	pmrna31928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216883.1.S1_at	R	R	pmrna31929	pmrna31929	NA	NA	P0AGB2	Phosphoserine phosphatase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216884.1.S1_at	R	R	pmrna31930	pmrna31930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216885.1.S1_at	R	R	pmrna31931	pmrna31931	NA	NA	Q01856	Uncharacterized HTH-type transcriptional regulator RHOS4_30730	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216886.1.S1_at	R	R	pmrna31932	pmrna31932	NA	NA	Q9CK95	Probable D-methionine-binding lipoprotein metQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216887.1.S1_at	R	R	pmrna31933	pmrna31933	NA	NA	P74867	Inner membrane transporter rhtA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216891.1.S1_at	R	R	pmrna31937	pmrna31937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216892.1.S1_at	R	R	pmrna31938	pmrna31938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216898.1.S1_at	R	R	pmrna31951	pmrna31951	NA	NA	Q9SRT7	COBRA-like protein 1	AT3G02210.1	COBRA-like protein 1 precursor 	LOC_Os07g41310.1	"COBRA, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	NA	NA	NA
PtpAffx.216930.1.S1_at	R	R	pmrna32006	pmrna32006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216932.1.S1_at	R	R	pmrna32008	pmrna32008	NA	NA	Q3YRU2	Deoxyuridine 5'-triphosphate nucleotidohydrolase	AT3G46940.1	DUTP-PYROPHOSPHATASE-LIKE 1 	LOC_Os03g46640.1	"deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.216933.1.S1_at	R	R	pmrna32009	pmrna32009	NA	NA	P21627	High-affinity branched-chain amino acid transport system permease protein BraD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216936.1.S1_at	R	R	pmrna32013	pmrna32013	NA	NA	P72131	HTH-type transcriptional regulator ptxR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216938.1.S1_at	R	R	pmrna32015	pmrna32015	NA	NA	P06715	Glutathione reductase	AT3G54660.1	glutathione reductase 	LOC_Os02g56850.3	"glutathione reductase, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	NA	NA	NA
PtpAffx.216939.1.S1_at	R	R	pmrna32016	pmrna32016	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216956.1.S1_at	R	R	pmrna32037	pmrna32037	NA	NA	P21630	High-affinity branched-chain amino acid transport ATP-binding protein BraG	AT5G61730.1	ABC2 homolog 11 	LOC_Os08g30740.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g149810.1	AAA ATPase 	NA	NA	NA
PtpAffx.216958.1.S1_at	R	R	pmrna32039	pmrna32039	NA	NA	Q9TKW2	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38229.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.216958.1.S1_s_at	R	R	pmrna32039	pmrna32039	NA	NA	Q9TKW2	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38229.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.216994.1.S1_at	R	R	pmrna32092	pmrna32092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216997.1.S1_at	R	R	pmrna32095	pmrna32095	NA	NA	Q84HH6	Benzoyl-CoA-dihydrodiol lyase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.216998.1.S1_at	R	R	pmrna32096	pmrna32096	NA	NA	P76558	NADP-dependent malic enzyme	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217001.1.S1_at	R	R	pmrna32099	pmrna32099	NA	NA	P39165	Uncharacterized protein ychO	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217002.1.S1_at	R	R	pmrna32100	pmrna32100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217004.1.S1_at	R	R	pmrna32102	pmrna32102	NA	NA	Q1LHJ8	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG	AT2G13440.1	glucose-inhibited division family A protein 	LOC_Os01g72980.2	"tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed"	Medtr4g143160.1	Glucose-inhibited division protein A 	NA	NA	NA
PtpAffx.217005.1.S1_at	R	R	pmrna32103	pmrna32103	NA	NA	Q1LJM9	Pantothenate synthetase	AT5G48840.1	homolog of bacterial PANC 	NA	NA	Medtr7g064910.1	Pantoate-beta-alanine ligase 	NA	NA	NA
PtpAffx.217008.1.S1_at	R	R	pmrna32107	pmrna32107	NA	NA	Q51697	Isoquinoline 1-oxidoreductase subunit alpha	AT4G34890.1	xanthine dehydrogenase 1 	LOC_Os03g57690.1	"aldehyde oxidase, putative"	NA	NA	NA	NA	NA
PtpAffx.217009.1.S1_at	R	R	pmrna32108	pmrna32108	NA	NA	Q8G2M6	Efflux pump membrane transporter BepE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217011.1.S1_at	R	R	pmrna32110	pmrna32110	NA	NA	A1K5F2	Electron transport complex protein rnfB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217012.1.S1_at	R	R	pmrna32111	pmrna32111	NA	NA	P21367	Uncharacterized protein ycaC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217013.1.S1_at	R	R	pmrna32112	pmrna32112	NA	NA	P0AA93	Inner membrane protein ypdA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217016.1.S1_at	R	R	pmrna32116	pmrna32116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217018.1.S1_at	R	R	pmrna32121	pmrna32121	NA	NA	P23537	Phosphocarrier protein HPr	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217019.1.S1_at	R	R	pmrna32122	pmrna32122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217022.1.S1_at	R	R	pmrna32125	pmrna32125	NA	NA	Q9CK95	Probable D-methionine-binding lipoprotein metQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217043.1.S1_at	R	R	pmrna32162	pmrna32162	scaffold_1:13273463-13274311(-) (10)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os02g37950.3	"transposon protein, putative, unclassified, expressed"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	NA	NA	NA
PtpAffx.217056.1.S1_at	R	R	pmrna32183	pmrna32183	NA	NA	P70786	Putative tartrate transporter	NA	NA	LOC_Os09g39680.1	"transporter, major facilitator family, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217058.1.S1_at	R	R	pmrna32188	pmrna32188	NA	NA	A1TLD7	3-oxoacyl-[acyl-carrier-protein] synthase 3	AT1G62640.2	3-ketoacyl-acyl carrier protein synthase III 	LOC_Os04g55060.1	"3-oxoacyl-synthase III, chloroplast precursor, putative, expressed"	AC233655_6.1	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC233655.2 62222-64410 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.217064.1.S1_at	R	R	pmrna32198	pmrna32198	NA	NA	Q0I3W7	Methionyl-tRNA synthetase	AT4G13780.1	"methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative "	LOC_Os06g31210.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	NA	NA	NA
PtpAffx.217065.1.S1_at	R	R	pmrna32199	pmrna32199	NA	NA	P37610	Alpha-ketoglutarate-dependent taurine dioxygenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217066.1.S1_at	R	R	pmrna32200	pmrna32200	NA	NA	Q98E34	Error-prone DNA polymerase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217068.1.S1_at	R	R	pmrna32203	pmrna32203	NA	NA	P0A600	Sensor-like histidine kinase senX3	AT1G66340.1	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os01g69920.3	"histidine kinase, putative, expressed"	Medtr4g156220.2	Response regulator receiver; CHASE; Heavy metal sensor kinase 	NA	NA	NA
PtpAffx.217073.1.S1_at	R	R	pmrna32209	pmrna32209	NA	NA	P0CD35	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043720.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.217074.1.S1_at	R	R	pmrna32210	pmrna32210	scaffold_26:183886-183929(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217075.1.S1_at	R	R	pmrna32211	pmrna32211	NA	NA	Q6ENR3	Putative uncharacterized protein ycf15	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217080.1.S1_at	R	R	pmrna32217	pmrna32217	NA	NA	P19076	2-hydroxymuconic semialdehyde hydrolase	AT4G36530.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g47620.3	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr4g163320.1	Alpha/beta hydrolase fold 	NA	NA	NA
PtpAffx.217081.1.S1_at	R	R	pmrna32218	pmrna32218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217086.1.S1_at	R	R	pmrna32225	pmrna32225	NA	NA	O32182	Uncharacterized MFS-type transporter yusP	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217089.1.S1_at	R	R	pmrna32228	pmrna32228	NA	NA	O66466	Uncharacterized protein aq_054	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217090.1.S1_at	R	R	pmrna32229	pmrna32229	NA	NA	Q24UB1	50S ribosomal protein L19	AT1G24240.1	Ribosomal protein L19 family protein 	LOC_Os02g43600.1	"50S ribosomal protein L19, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217092.1.S1_at	R	R	pmrna32231	pmrna32231	NA	NA	Q3SGR5	Phosphoglycolate phosphatase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217093.1.S1_at	R	R	pmrna32232	pmrna32232	NA	NA	Q9CE00	Putative glutamine amidotransferase-like protein yvdE	AT1G15040.2	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os01g04620.3	"transposon protein, putative, unclassified, expressed"	Medtr7g093720.1	Peptidase C26 	NA	NA	NA
PtpAffx.217094.1.S1_at	R	R	pmrna32233	pmrna32233	NA	NA	Q44018	UPF0065 protein in gbd 5'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217100.1.S1_at	R	R	pmrna32240	pmrna32240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217120.1.S1_at	R	R	pmrna32263	pmrna32263	NA	NA	NA	NA	NA	NA	LOC_Os02g32230.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	NA	NA	NA
PtpAffx.217124.1.S1_at	R	R	pmrna32268	pmrna32268	NA	NA	P13111	Mercuric resistance operon regulatory protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217125.1.S1_at	R	R	pmrna32269	pmrna32269	NA	NA	P94185	Mercuric transport protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217128.1.S1_at	R	R	pmrna32272	pmrna32272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217131.1.S1_at	R	R	pmrna32275	pmrna32275	NA	NA	Q1LI43	30S ribosomal protein S3	ATCG00800.1	structural constituent of ribosome 	LOC_Os10g21346.1	"chloroplast 30S ribosomal protein S3, putative, expressed"	Medtr8g039660.1	Bacterial ribosomal protein S3 	NA	NA	NA
PtpAffx.217133.1.S1_at	R	R	pmrna32278	pmrna32278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217136.1.S1_at	R	R	pmrna32282	pmrna32282	NA	NA	Q1LJ82	Chaperone protein dnaJ	AT5G48030.1	gametophytic factor 2 	LOC_Os12g07060.1	"chaperone protein dnaJ, putative, expressed"	Medtr3g030790.1	DnaJ central region 	NA	NA	NA
PtpAffx.217148.1.S1_at	R	R	pmrna32295	pmrna32295	NA	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G20560.2	acyl activating enzyme 1 	LOC_Os02g02700.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008870.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.217152.1.S1_at	R	R	pmrna32301	pmrna32301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217153.1.S1_at	R	R	pmrna32302	pmrna32302	NA	NA	P22008	Pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217155.1.S1_at	R	R	pmrna32306	pmrna32306	NA	NA	P44881	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217156.1.S1_at	R	R	pmrna32307	pmrna32307	NA	NA	Q6NYL3	Peroxisomal bifunctional enzyme	NA	NA	NA	NA	Medtr6g099470.1	IQ calmodulin-binding region; Enoyl-CoA hydratase/isomerase 	NA	NA	NA
PtpAffx.217157.1.S1_at	R	R	pmrna32308	pmrna32308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217158.1.S1_at	R	R	pmrna32309	pmrna32309	NA	NA	O31603	Uncharacterized membrane protein yjbE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217159.1.S1_s_at	R	R	pmrna32310	pmrna32310	NA	NA	Q1LK81	Thymidylate synthase	NA	NA	NA	NA	Medtr3g162670.2	Thymidylate synthase 	NA	NA	NA
PtpAffx.217160.1.S1_at	R	R	pmrna32311	pmrna32311	NA	NA	Q9CPJ0	Fatty acid metabolism regulator protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217161.1.S1_at	R	R	pmrna32313	pmrna32313	NA	NA	P44483	Putative TRAP transporter large permease protein HI_0050	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217173.1.S1_at	R	R	pmrna32327	pmrna32327	NA	NA	P24203	Uncharacterized GTP-binding protein yjiA	AT1G80480.1	plastid transcriptionally active 17 	LOC_Os04g51100.1	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	NA	NA	NA
PtpAffx.217174.1.S1_at	R	R	pmrna32328	pmrna32328	NA	NA	A1RPD0	Tyrosine recombinase xerC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217178.1.S1_at	R	R	pmrna32334	pmrna32334	NA	NA	B3R112	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	ATCG00500.1	acetyl-CoA carboxylase carboxyl transferase subunit beta 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217179.1.S1_at	R	R	pmrna32335	pmrna32335	NA	NA	P0ABP2	Anaerobic C4-dicarboxylate transporter dcuB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217180.1.S1_at	R	R	pmrna32336	pmrna32336	NA	NA	P76460	Short-chain fatty acids transporter	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217223.1.S1_at	R	R	pmrna32404	pmrna32404	NA	NA	Q10663	Bifunctional glyoxylate cycle protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217225.1.S1_at	R	R	pmrna32407	pmrna32407	NA	NA	P58655	Phosphate transport system permease protein pstA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217226.1.S1_at	R	R	pmrna32408	pmrna32408	NA	NA	Q1RGP0	ATP-dependent zinc metalloprotease FtsH	AT2G30950.1	FtsH extracellular protease family 	LOC_Os06g45820.4	"OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	NA	NA	NA
PtpAffx.217227.1.S1_at	R	R	pmrna32409	pmrna32409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217234.1.S1_at	R	R	pmrna32418	pmrna32418	NA	NA	P75830	Macrolide-specific efflux protein macA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217270.1.S1_at	R	R	pmrna32462	pmrna32462	scaffold_18:14659978-14660344(-) (11)	NA	Q96372	Cell division cycle protein 48 homolog	AT3G09840.1	cell division cycle 48 	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	Medtr7g123900.1	"AAA ATPase, central region "	NA	NA	NA
PtpAffx.217290.1.S1_at	R	R	pmrna32489	pmrna32489	NA	NA	Q986B5	Glycyl-tRNA synthetase beta subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217291.1.S1_at	R	R	pmrna32492	pmrna32492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217292.1.S1_at	R	R	pmrna32493	pmrna32493	NA	NA	Q8XXY0	Tryptophan synthase beta chain	AT4G27070.1	tryptophan synthase beta-subunit 2 	LOC_Os08g04180.1	"tryptophan synthase beta chain 1, putative, expressed"	Medtr3g064270.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	NA	NA	NA
PtpAffx.217293.1.S1_at	R	R	pmrna32494	pmrna32494	NA	NA	P14611	Acetyl-CoA acetyltransferase	AT5G47720.5	Thiolase family protein 	LOC_Os09g07830.3	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	AC233669_10.2	Thiolase AC233669.2 43191-45704 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.217295.1.S1_at	R	R	pmrna32497	pmrna32497	NA	NA	Q1LQ15	"Fructose-1,6-bisphosphatase class 1 1"	AT1G43670.1	Inositol monophosphatase family protein 	LOC_Os01g64660.2	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	NA	NA	NA
PtpAffx.217296.1.S1_at	R	R	pmrna32498	pmrna32498	NA	NA	P52228	Thioredoxin C-3	AT1G43560.1	thioredoxin Y2 	LOC_Os12g08730.1	"thioredoxin, putative, expressed"	Medtr1g125070.1	Thioredoxin-related; Thioredoxin domain 2; 	NA	NA	NA
PtpAffx.217299.1.S1_at	R	R	pmrna32501	pmrna32501	NA	NA	P51834	Chromosome partition protein smc	AT5G48600.2	structural maintenance of chromosome 3 	LOC_Os02g04040.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	Medtr8g087350.1	Prefoldin; SMCs flexible hinge 	NA	NA	NA
PtpAffx.217300.1.S1_at	R	R	pmrna32502	pmrna32502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217302.1.S1_at	R	R	pmrna32504	pmrna32504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217303.1.S1_at	R	R	pmrna32505	pmrna32505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217304.1.S1_at	R	R	pmrna32506	pmrna32506	NA	NA	P13511	Cobalt-zinc-cadmium resistance protein CzcA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217330.1.S1_at	R	R	pmrna32546	pmrna32546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217338.1.S1_at	R	R	pmrna32556	pmrna32556	NA	NA	P22118	DNA gyrase subunit B	AT5G04130.1	DNA GYRASE B2 	LOC_Os01g16290.1	"DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed"	Medtr7g106810.1	DNA gyrase B; ; ; 	NA	NA	NA
PtpAffx.217343.1.S1_at	R	R	pmrna32561	pmrna32561	NA	NA	Q59643	Delta-aminolevulinic acid dehydratase	AT1G69740.2	Aldolase superfamily protein 	LOC_Os06g49110.3	"delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed"	Medtr3g100480.1	Delta-aminolevulinic acid dehydratase 	NA	NA	NA
PtpAffx.21735.2.S1_a_at	R	R	CK107326	CK107326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21735.2.S1_at	R	R	CK107326	CK107326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217386.1.S1_at	R	R	pmrna32632	pmrna32632	scaffold_4:36798-36980(-) (11)	NA	P51819	Heat shock protein 83	AT5G52640.1	heat shock protein 90.1 	LOC_Os08g39140.4	"heat shock protein, putative, expressed"	Medtr1g126230.1	"ATP-binding region, ATPase-like "	NA	NA	NA
PtpAffx.217389.1.S1_at	R	R	pmrna32636	pmrna32636	NA	NA	P59078	Methionyl-tRNA synthetase	AT3G55400.2	methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) 	NA	NA	Medtr1g023340.1	"Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; "	NA	NA	NA
PtpAffx.217393.1.S1_at	R	R	pmrna32640	pmrna32640	NA	NA	Q9HZQ3	Aerobic cobaltochelatase subunit CobN	AT5G13630.1	"magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) "	LOC_Os03g20700.2	"magnesium-chelatase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217401.1.S1_at	R	R	pmrna32650	pmrna32650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217402.1.S1_at	R	R	pmrna32651	pmrna32651	NA	NA	Q8NIL3	Antisense-enhancing sequence 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217405.1.S1_at	R	R	pmrna32655	pmrna32655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217406.1.S1_at	R	R	pmrna32656	pmrna32656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217408.1.S1_at	R	R	pmrna32658	pmrna32658	scaffold_1:10098690-10099187(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	NA	NA	NA
PtpAffx.217423.1.S1_at	R	R	pmrna32676	pmrna32676	NA	NA	P65409	Uncharacterized protein Mb2924c	NA	NA	NA	NA	AC148471_42.1	"Oxidoreductase, N-terminal; Molydopterin dinucleotide-binding region AC148471.15 85747-83648 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.217424.1.S1_at	R	R	pmrna32677	pmrna32677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217425.1.S1_at	R	R	pmrna32678	pmrna32678	NA	NA	P63498	Probable aspartate aminotransferase	AT1G72330.3	alanine aminotransferase 2 	NA	NA	Medtr8g026620.1	"Aminotransferase, class I and II; ; "	NA	NA	NA
PtpAffx.217426.1.S1_at	R	R	pmrna32679	pmrna32679	NA	NA	Q390V3	5'-nucleotidase surE 1	AT4G14930.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os07g10460.2	"5-nucleotidase surE, putative, expressed"	Medtr5g006360.1	Survival protein SurE 	NA	NA	NA
PtpAffx.217427.1.S1_at	R	R	pmrna32680	pmrna32680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217428.1.S1_at	R	R	pmrna32682	pmrna32682	NA	NA	Q92ME3	Tyrosine recombinase xerD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217429.1.S1_at	R	R	pmrna32683	pmrna32683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217432.1.S1_at	R	R	pmrna32686	pmrna32686	NA	NA	Q57837	Zinc metalloprotease MJ0392	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217438.1.S1_at	R	R	pmrna32693	pmrna32693	NA	NA	P16939	Insertion element IS600 uncharacterized 11 kDa protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217438.1.S1_s_at	R	R	pmrna32693	pmrna32693	NA	NA	P16939	Insertion element IS600 uncharacterized 11 kDa protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217439.1.S1_at	R	R	pmrna32694	pmrna32694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217441.1.S1_at	R	R	pmrna32698	pmrna32698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217442.1.S1_at	R	R	pmrna32699	pmrna32699	NA	NA	NA	NA	NA	NA	LOC_Os05g12330.1	"uncharacterized protein KIAA1310, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217444.1.S1_at	R	R	pmrna32701	pmrna32701	NA	NA	Q04850	Nitrogen regulation protein ntrY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217447.1.S1_at	R	R	pmrna32707	pmrna32707	scaffold_11:13157372-13157786(+) (11)	NA	P0CD25	"NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043720.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.217474.1.S1_at	R	R	pmrna32753	pmrna32753	NA	NA	Q04778	HTH-type transcriptional regulator AlsR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217481.1.S1_at	R	R	pmrna32766	pmrna32766	NA	NA	P14175	Glycine betaine/L-proline transport ATP-binding protein proV	AT1G67940.1	non-intrinsic ABC protein 3 	LOC_Os06g48060.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g154730.1	ABC transporter related 	NA	NA	NA
PtpAffx.217483.1.S1_s_at	R	R	pmrna32768	pmrna32768	scaffold_6:17119211-17119738(-) (11)	NA	P48513	Transcription initiation factor IIB	AT3G10330.1	Cyclin-like family protein 	LOC_Os09g36440.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g108460.1	Cyclin-like; ; 	NA	NA	NA
PtpAffx.217484.1.S1_at	R	R	pmrna32769	pmrna32769	NA	NA	P56913	NADH-quinone oxidoreductase subunit F 2	AT5G08530.1	51 kDa subunit of complex I 	LOC_Os07g45090.1	"NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed"	Medtr1g043800.1	"Respiratory-chain NADH dehydrogenase, 51 kDa subunit "	NA	NA	NA
PtpAffx.217486.1.S1_at	R	R	pmrna32771	pmrna32771	NA	NA	Q9WWZ8	Toluene efflux pump outer membrane protein ttgC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217487.1.S1_at	R	R	pmrna32772	pmrna32772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217488.1.S1_at	R	R	pmrna32773	pmrna32773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217489.1.S1_at	R	R	pmrna32774	pmrna32774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217490.1.S1_at	R	R	pmrna32775	pmrna32775	NA	NA	Q9ZHI4	HTH-type transcriptional activator soxR homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217491.1.S1_at	R	R	pmrna32776	pmrna32776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217492.1.S1_at	R	R	pmrna32777	pmrna32777	NA	NA	P23072	RNA-directed DNA polymerase from retron Mx162-RT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217493.1.S1_at	R	R	pmrna32778	pmrna32778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217496.1.S1_at	R	R	pmrna32783	pmrna32783	NA	NA	P0A9W5	Uncharacterized ABC transporter ATP-binding protein yjjK	AT5G64840.1	general control non-repressible 5 	LOC_Os11g39020.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g144690.1	AAA ATPase 	NA	NA	NA
PtpAffx.217497.1.S1_at	R	R	pmrna32784	pmrna32784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217498.1.S1_at	R	R	pmrna32785	pmrna32785	NA	NA	P86491	6-hydroxynicotinate 3-monooxygenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217499.1.S1_at	R	R	pmrna32786	pmrna32786	NA	NA	P64812	Uncharacterized protein Mb1368	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217500.1.S1_at	R	R	pmrna32787	pmrna32787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217502.1.S1_at	R	R	pmrna32789	pmrna32789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217505.1.S1_x_at	R	R	pmrna32793	pmrna32793	NA	NA	Q2PMU3	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38229.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.217513.1.S1_at	R	R	pmrna32806	pmrna32806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217514.1.S1_at	R	R	pmrna32807	pmrna32807	NA	NA	O66602	Superoxide dismutase [Cu-Zn] 2	AT1G08830.2	copper/zinc superoxide dismutase 1 	LOC_Os03g22810.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr7g140060.1	"Superoxide dismutase, copper/zinc binding "	NA	NA	NA
PtpAffx.217515.1.S1_at	R	R	pmrna32808	pmrna32808	NA	NA	P52696	Uncharacterized HTH-type transcriptional regulator ybhD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217518.1.S1_at	R	R	pmrna32812	pmrna32812	NA	NA	Q8X7S0	Uncharacterized FAD-linked oxidoreductase ygcU	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217528.1.S1_at	R	R	pmrna32823	pmrna32823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217541.1.S1_x_at	R	R	pmrna32852	pmrna32852	scaffold_2689:980-1484(-) (10)	NA	NA	NA	NA	NA	LOC_Os10g21350.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.217564.1.S1_at	R	R	pmrna32879	pmrna32879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217569.1.S1_at	R	R	pmrna32888	pmrna32888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217573.1.S1_at	R	R	pmrna32895	pmrna32895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217574.1.S1_at	R	R	pmrna32896	pmrna32896	NA	NA	Q8XWB1	DNA mismatch repair protein mutL	AT4G09140.1	MUTL-homologue 1 	LOC_Os01g72880.1	"DNA mismatch repair protein Mlh1, putative, expressed"	Medtr3g013270.1	DNA mismatch repair protein; ; ; 	NA	NA	NA
PtpAffx.217597.1.S1_at	R	R	pmrna32929	pmrna32929	NA	NA	P54933	ATP-binding transport protein smoK	AT2G41700.2	ATP-binding cassette A1 	LOC_Os03g46740.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	NA	NA
PtpAffx.217598.1.S1_at	R	R	pmrna32930	pmrna32930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217600.1.S1_at	R	R	pmrna32934	pmrna32934	NA	NA	A9BV02	3-methyl-2-oxobutanoate hydroxymethyltransferase	AT3G61530.2	Phosphoenolpyruvate carboxylase family protein 	LOC_Os01g12570.1	"3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed"	AC235567_90.1	Ketopantoate hydroxymethyltransferase AC235567.1 345051-342096 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.217601.1.S1_at	R	R	pmrna32935	pmrna32935	NA	NA	P63389	Uncharacterized ABC transporter ATP-binding protein yheS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217603.1.S1_at	R	R	pmrna32937	pmrna32937	NA	NA	P38097	Probable diguanylate cyclase YegE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217606.1.S1_at	R	R	pmrna32942	pmrna32942	NA	NA	Q04778	HTH-type transcriptional regulator AlsR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217611.1.S1_at	R	R	pmrna32949	pmrna32949	NA	NA	B9MDD6	Probable GTP-binding protein engB	AT2G22870.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g13000.2	"GTP-binding protein, putative, expressed"	Medtr3g132650.1	Small GTP-binding protein domain 	NA	NA	NA
PtpAffx.217613.1.S1_at	R	R	pmrna32952	pmrna32952	NA	NA	P11454	Enterobactin synthase component F	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217623.1.S1_at	R	R	pmrna32964	pmrna32964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217625.1.S1_at	R	R	pmrna32968	pmrna32968	NA	NA	B2U6V1	Acetyl-coenzyme A synthetase	AT5G36880.2	acetyl-CoA synthetase 	LOC_Os04g33190.1	"AMP-binding enzyme, putative, expressed"	Medtr7g099650.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.217631.1.S1_at	R	R	pmrna32977	pmrna32977	NA	NA	P55680	Uncharacterized zinc protease-like protein y4wB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217636.1.S1_at	R	R	pmrna32982	pmrna32982	scaffold_17:9376209-9379030(-) (11)	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	NA	NA	Medtr6g009010.1	Cytochrome P450 	NA	NA	NA
PtpAffx.217644.1.S1_at	R	R	pmrna32991	pmrna32991	NA	NA	Q1LKH7	3-isopropylmalate dehydrogenase	AT1G80560.1	isopropylmalate dehydrogenase 2 	LOC_Os03g45320.2	"dehydrogenase, putative, expressed"	Medtr2g127240.1	Isocitrate/isopropylmalate dehydrogenase 	NA	NA	NA
PtpAffx.217646.1.S1_at	R	R	pmrna32996	pmrna32996	NA	NA	P14376	Sensor kinase protein RcsC	AT2G01830.1	CHASE domain containing histidine kinase protein 	LOC_Os10g21810.1	"histidine kinase, putative, expressed"	Medtr4g156220.2	Response regulator receiver; CHASE; Heavy metal sensor kinase 	NA	NA	NA
PtpAffx.217647.1.S1_at	R	R	pmrna32997	pmrna32997	NA	NA	O14110	"Probable aminomethyltransferase, mitochondrial"	AT1G11860.3	Glycine cleavage T-protein family 	LOC_Os04g53230.1	"aminomethyltransferase, putative, expressed"	Medtr8g147030.2	Glycine cleavage system T protein 	NA	NA	NA
PtpAffx.217652.1.S1_at	R	R	pmrna33003	pmrna33003	NA	NA	Q5F5C8	Bifunctional enzyme BirA/CoaX	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217653.1.S1_at	R	R	pmrna33004	pmrna33004	NA	NA	Q5M827	Pirin	AT2G43120.1	RmlC-like cupins superfamily protein 	LOC_Os03g62790.1	"pirin, putative, expressed"	Medtr5g101700.1	"Pirin, N-terminal "	NA	NA	NA
PtpAffx.217654.1.S1_at	R	R	pmrna33006	pmrna33006	NA	NA	Q63TI8	Valyl-tRNA synthetase	AT5G16715.1	ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os03g48850.2	"valyl-tRNA synthetase, putative, expressed"	Medtr1g129510.1	"Isoleucyl-tRNA synthetase, class Ia; "	NA	NA	NA
PtpAffx.217655.1.S1_at	R	R	pmrna33007	pmrna33007	NA	NA	P76190	Uncharacterized protein ydhO	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217656.1.S1_at	R	R	pmrna33008	pmrna33008	NA	NA	O30499	Probable low-affinity inorganic phosphate transporter	AT3G26570.2	phosphate transporter 2;1 	LOC_Os02g38020.2	"inorganic phosphate transporter 2-1, chloroplast precursor, putative, expressed"	Medtr8g081830.1	Phosphate transporter 	NA	NA	NA
PtpAffx.217657.1.S1_at	R	R	pmrna33010	pmrna33010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217663.1.S1_at	R	R	pmrna33017	pmrna33017	NA	NA	A8GHQ9	Multidrug resistance protein mdtB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217665.1.S1_at	R	R	pmrna33019	pmrna33019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217666.1.S1_at	R	R	pmrna33020	pmrna33020	NA	NA	Q1LPS7	Urease accessory protein ureF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217669.1.S1_at	R	R	pmrna33026	pmrna33026	NA	NA	Q9CM51	Ribosomal large subunit pseudouridine synthase C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217670.1.S1_at	R	R	pmrna33027	pmrna33027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217675.1.S1_at	R	R	pmrna33035	pmrna33035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217676.1.S1_at	R	R	pmrna33036	pmrna33036	NA	NA	P28613	Probable sigma(54) modulation protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217677.1.S1_at	R	R	pmrna33037	pmrna33037	NA	NA	P0AF01	Molybdenum transport system permease protein modB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217679.1.S1_at	R	R	pmrna33039	pmrna33039	NA	NA	P0A3T2	31 kDa immunogenic protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217680.1.S1_at	R	R	pmrna33040	pmrna33040	NA	NA	Q4R4Z9	"Acyl-CoA synthetase family member 2, mitochondrial"	AT1G65060.2	4-coumarate:CoA ligase 3 	LOC_Os02g46970.1	"AMP-binding domain containing protein, expressed"	Medtr5g007720.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.217688.1.S1_at	R	R	pmrna33050	pmrna33050	NA	NA	Q8X4Z7	HTH-type transcriptional regulator RutR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217692.1.S1_at	R	R	pmrna33055	pmrna33055	NA	NA	Q9I310	Uncharacterized signaling protein PA1727	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217694.1.S1_at	R	R	pmrna33057	pmrna33057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217706.1.S1_at	R	R	pmrna33070	pmrna33070	NA	NA	A9BP65	Prolyl-tRNA synthetase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217710.1.S1_at	R	R	pmrna33075	pmrna33075	NA	NA	Q06319	"Acyl-CoA dehydrogenase, short-chain specific"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217713.1.S1_at	R	R	pmrna33078	pmrna33078	NA	NA	P44907	Ribonuclease R	AT2G17510.2	ribonuclease II family protein 	LOC_Os03g03710.1	"ribonuclease protein, putative, expressed"	Medtr8g087680.1	"Ribonuclease II; Nucleotide binding protein, PINc "	NA	NA	NA
PtpAffx.217714.1.S1_at	R	R	pmrna33080	pmrna33080	NA	NA	P27017	Aliphatic amidase expression-regulating protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217720.1.S1_at	R	R	pmrna33086	pmrna33086	NA	NA	P50598	Protein tolQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217721.1.S1_at	R	R	pmrna33087	pmrna33087	NA	NA	Q7MGP6	"Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217722.1.S1_at	R	R	pmrna33088	pmrna33088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217723.1.S1_at	R	R	pmrna33089	pmrna33089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217724.1.S1_at	R	R	pmrna33090	pmrna33090	NA	NA	P52067	Fosmidomycin resistance protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217725.1.S1_at	R	R	pmrna33091	pmrna33091	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217725.1.S1_x_at	R	R	pmrna33091	pmrna33091	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217726.1.S1_at	R	R	pmrna33092	pmrna33092	NA	NA	P39434	Soluble lytic murein transglycosylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217729.1.S1_at	R	R	pmrna33097	pmrna33097	scaffold_1:38977756-38978676(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217736.1.S1_at	R	R	pmrna33118	pmrna33118	NA	NA	NA	NA	AT1G29760.1	Putative adipose-regulatory protein (Seipin) 	LOC_Os09g36360.1	"protein of unknown function containing protein, expressed"	Medtr4g136210.1	hypothetical protein 	NA	NA	NA
PtpAffx.217742.1.S1_at	R	R	pmrna33130	pmrna33130	NA	NA	Q3YR47	Protein-export protein secB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217743.1.S1_at	R	R	pmrna33131	pmrna33131	NA	NA	Q44018	UPF0065 protein in gbd 5'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217745.1.S1_at	R	R	pmrna33133	pmrna33133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217746.1.S1_at	R	R	pmrna33134	pmrna33134	NA	NA	P59930	Single-stranded DNA-binding protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217747.1.S1_at	R	R	pmrna33135	pmrna33135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217748.1.S1_at	R	R	pmrna33136	pmrna33136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217749.1.S1_at	R	R	pmrna33137	pmrna33137	scaffold_2020:951-1521(+) (11)	NA	P49859	Portal protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217754.1.S1_at	R	R	pmrna33143	pmrna33143	NA	NA	P22320	NAD-reducing hydrogenase hoxS subunit beta	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217761.1.S1_at	R	R	pmrna33154	pmrna33154	NA	NA	P94474	Uncharacterized protein yeaC	NA	NA	NA	NA	AC148471_29.1	"ATPase associated with various cellular activities, AAA_3 AC148471.15 49174-50241 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.217766.1.S1_at	R	R	pmrna33160	pmrna33160	NA	NA	Q473G6	2-dehydro-3-deoxyphosphooctonate aldolase	AT1G16340.3	Aldolase superfamily protein 	LOC_Os12g10784.3	"2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed"	Medtr7g092790.1	2-dehydro-3-deoxyphosphooctonate aldolase 	NA	NA	NA
PtpAffx.217767.1.S1_at	R	R	pmrna33161	pmrna33161	NA	NA	Q1LPI8	CTP synthase	AT3G12670.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr8g084050.1	CTP synthase 	NA	NA	NA
PtpAffx.217768.1.S1_at	R	R	pmrna33162	pmrna33162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217770.1.S1_at	R	R	pmrna33165	pmrna33165	NA	NA	Q9Y7Z3	Putative acyl-CoA-binding protein	AT1G31812.1	acyl-CoA-binding protein 6 	LOC_Os08g06550.1	"acyl CoA binding protein, putative, expressed"	Medtr5g026900.1	"Acyl-coA-binding protein, ACBP "	NA	NA	NA
PtpAffx.217771.1.S1_at	R	R	pmrna33167	pmrna33167	NA	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT1G47271.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os01g44360.1	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	NA	NA	NA
PtpAffx.217772.1.S1_at	R	R	pmrna33168	pmrna33168	NA	NA	P54990	Nitrilotriacetate monooxygenase component B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217773.1.S1_at	R	R	pmrna33170	pmrna33170	NA	NA	A9BNK8	50S ribosomal protein L32	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217774.1.S1_at	R	R	pmrna33171	pmrna33171	NA	NA	Q9CM51	Ribosomal large subunit pseudouridine synthase C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217776.1.S1_at	R	R	pmrna33173	pmrna33173	NA	NA	P0AGM0	UPF0118 inner membrane protein yhhT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217777.1.S1_at	R	R	pmrna33174	pmrna33174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217809.1.S1_at	R	R	pmrna33217	pmrna33217	NA	NA	P45745	Dimodular nonribosomal peptide synthase	AT5G35930.1	AMP-dependent synthetase and ligase family protein 	LOC_Os06g02160.4	"AMP-binding enzyme family protein, expressed"	Medtr4g132920.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like 	NA	NA	NA
PtpAffx.217810.1.S1_at	R	R	pmrna33218	pmrna33218	NA	NA	P06971	Ferrichrome-iron receptor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217811.1.S1_at	R	R	pmrna33219	pmrna33219	NA	NA	P39389	Uncharacterized HTH-type transcriptional regulator yjiR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217813.1.S1_at	R	R	pmrna33225	pmrna33225	NA	NA	P0AGA5	Preprotein translocase subunit secY	AT2G18710.1	SECY homolog 1 	LOC_Os08g15460.1	"preprotein translocase subunit secY, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217814.1.S1_at	R	R	pmrna33226	pmrna33226	NA	NA	P44732	Probable oxidoreductase ordL	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217817.1.S1_at	R	R	pmrna33231	pmrna33231	NA	NA	P54529	Putative sigma L-dependent transcriptional regulator yqiR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217818.1.S1_at	R	R	pmrna33232	pmrna33232	NA	NA	B7NLF9	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217821.1.S1_at	R	R	pmrna33235	pmrna33235	NA	NA	Q9ZLR4	UPF0118 membrane protein jhp_0514	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217824.1.S1_at	R	R	pmrna33239	pmrna33239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217825.1.S1_at	R	R	pmrna33240	pmrna33240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217835.1.S1_x_at	R	R	pmrna33258	pmrna33258	scaffold_7:8372313-8372573(+) (9)	NA	P06405	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g21250.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g169540.1	Photosystem I psaA 	NA	NA	NA
PtpAffx.217836.1.S1_at	R	R	pmrna33259	pmrna33259	NA	NA	A1WLI1	tRNA pseudouridine synthase B	AT5G14460.1	Pseudouridine synthase family protein 	LOC_Os05g01750.1	"TruB family pseudouridylate synthase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217837.1.S1_at	R	R	pmrna33260	pmrna33260	NA	NA	Q9I6C8	Probable coniferyl aldehyde dehydrogenase	AT1G44170.2	aldehyde dehydrogenase 3H1 	LOC_Os11g08300.3	"aldehyde dehydrogenase, putative, expressed"	Medtr4g143820.1	Aldehyde dehydrogenase NAD(P)-dependent 	NA	NA	NA
PtpAffx.217839.1.S1_at	R	R	pmrna33262	pmrna33262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217840.1.S1_at	R	R	pmrna33263	pmrna33263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217841.1.S1_at	R	R	pmrna33264	pmrna33264	NA	NA	P44869	Ribosomal RNA small subunit methyltransferase D	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217842.1.S1_at	R	R	pmrna33265	pmrna33265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217845.1.S1_at	R	R	pmrna33268	pmrna33268	NA	NA	P39751	MreB-like protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217847.1.S1_at	R	R	pmrna33271	pmrna33271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217849.1.S1_at	R	R	pmrna33273	pmrna33273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217854.1.S1_at	R	R	pmrna33279	pmrna33279	NA	NA	P33224	Protein AidB	NA	NA	LOC_Os05g03480.5	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217856.1.S1_at	R	R	pmrna33281	pmrna33281	NA	NA	P0A9H7	Cyclopropane-fatty-acyl-phospholipid synthase	AT3G23510.1	Cyclopropane-fatty-acyl-phospholipid synthase 	LOC_Os07g29220.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr1g064910.1	Cyclopropane-fatty-acyl-phospholipid synthase 	NA	NA	NA
PtpAffx.217857.1.S1_at	R	R	pmrna33282	pmrna33282	NA	NA	P55929	Cytochrome c551 peroxidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217859.1.S1_at	R	R	pmrna33284	pmrna33284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217874.1.S1_at	R	R	pmrna33313	pmrna33313	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217877.1.S1_at	R	R	pmrna33316	pmrna33316	NA	NA	Q92I22	Succinyl-CoA ligase [ADP-forming] subunit alpha	AT5G23250.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	NA	NA	NA
PtpAffx.217882.1.S1_at	R	R	pmrna33326	pmrna33326	NA	NA	P13632	C4-dicarboxylate transport transcriptional regulatory protein dctD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217884.1.S1_at	R	R	pmrna33328	pmrna33328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217891.1.S1_at	R	R	pmrna33339	pmrna33339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217893.1.S1_at	R	R	pmrna33341	pmrna33341	NA	NA	A1W2Y8	Protein ApaG	NA	NA	LOC_Os05g07860.1	"uvrB/uvrC motif family protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.217894.1.S1_at	R	R	pmrna33342	pmrna33342	NA	NA	P44756	Ribulose-phosphate 3-epimerase	AT5G61410.2	D-ribulose-5-phosphate-3-epimerase 	LOC_Os03g07300.1	"ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217897.1.S1_at	R	R	pmrna33345	pmrna33345	NA	NA	P71997	Probable sulfate transporter Rv1739c/MT1781	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217898.1.S1_at	R	R	pmrna33346	pmrna33346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217899.1.S1_at	R	R	pmrna33347	pmrna33347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217903.1.S1_at	R	R	pmrna33355	pmrna33355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217904.1.S1_at	R	R	pmrna33356	pmrna33356	NA	NA	Q1LS34	S-adenosylmethionine synthase	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g18860.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	NA	NA	NA
PtpAffx.217906.1.S1_at	R	R	pmrna33358	pmrna33358	NA	NA	P25889	Uncharacterized protein yeiA	AT3G17810.1	pyrimidine 1 	LOC_Os02g50350.2	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr6g080670.1	Dihydroorotate dehydrogenase 1; Dihydroorotate oxidase 	NA	NA	NA
PtpAffx.217907.1.S1_at	R	R	pmrna33359	pmrna33359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217908.1.S1_at	R	R	pmrna33360	pmrna33360	NA	NA	O05218	Putative gamma-glutamyltransferase ywrD	AT4G29210.1	gamma-glutamyl transpeptidase 4 	LOC_Os04g38450.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217911.1.S1_at	R	R	pmrna33364	pmrna33364	NA	NA	A9BP37	Aspartyl-tRNA synthetase	AT4G33760.1	"tRNA synthetase class II (D, K and N) family protein "	LOC_Os01g06020.1	"aspartyl-tRNA synthetase, putative, expressed"	Medtr8g138390.1	"GAD; nucleic acid binding, OB-fold, tRNA/helicase-type "	NA	NA	NA
PtpAffx.217935.1.S1_at	R	R	pmrna33404	pmrna33404	NA	NA	A9BM65	UPF0234 protein Daci_4781	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217939.1.S1_at	R	R	pmrna33409	pmrna33409	NA	NA	Q44020	UPF0189 protein in gbd 3'region	AT2G40600.1	appr-1-p processing enzyme family protein 	LOC_Os03g21830.1	"appr-1-p processing enzyme family protein, putative, expressed"	Medtr1g008730.1	Appr-1-p processing 	NA	NA	NA
PtpAffx.217941.1.S1_at	R	R	pmrna33411	pmrna33411	NA	NA	A6T476	ATP synthase subunit a	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217943.1.S1_at	R	R	pmrna33413	pmrna33413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217944.1.S1_at	R	R	pmrna33415	pmrna33415	NA	NA	P18956	Gamma-glutamyltranspeptidase	AT4G39640.2	gamma-glutamyl transpeptidase 1 	LOC_Os04g38450.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr6g093830.1	Gamma-glutamyltranspeptidase 	NA	NA	NA
PtpAffx.217945.1.S1_at	R	R	pmrna33416	pmrna33416	NA	NA	P69938	Quaternary ammonium compound-resistance protein sugE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217951.1.S1_at	R	R	pmrna33423	pmrna33423	scaffold_19:2387461-2387559(+) (11)	NA	NA	NA	AT4G36590.1	MADS-box transcription factor family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217952.1.S1_at	R	R	pmrna33424	pmrna33424	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	AC235679_4.1	"Protein ycf2, putative AC235679.1 6247-7110 F EGN_Mt090430 200"	NA	NA	NA
PtpAffx.217961.1.S1_at	R	R	pmrna33445	pmrna33445	NA	NA	B0UWT1	Bifunctional purine biosynthesis protein purH	AT2G35040.2	AICARFT/IMPCHase bienzyme family protein 	LOC_Os08g10570.2	"bifunctional purine biosynthesis protein purH, putative, expressed"	Medtr5g103430.1	AICARFT/IMPCHase bienzyme; MGS-like 	NA	NA	NA
PtpAffx.217962.1.S1_at	R	R	pmrna33446	pmrna33446	NA	NA	P57829	Phosphoribosylamine--glycine ligase	AT1G09830.1	Glycinamide ribonucleotide (GAR) synthetase 	LOC_Os12g09540.2	"phosphoribosylamine--glycine ligase, putative, expressed"	Medtr5g025340.1	Phosphoribosylglycinamide synthetase; ; 	NA	NA	NA
PtpAffx.217964.1.S1_at	R	R	pmrna33449	pmrna33449	NA	NA	P13511	Cobalt-zinc-cadmium resistance protein CzcA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217965.1.S1_at	R	R	pmrna33450	pmrna33450	NA	NA	P16681	Protein phnB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217966.1.S1_at	R	R	pmrna33451	pmrna33451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217967.1.S1_at	R	R	pmrna33452	pmrna33452	NA	NA	Q11HH5	Probable cytosol aminopeptidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217968.1.S1_at	R	R	pmrna33453	pmrna33453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217972.1.S1_at	R	R	pmrna33460	pmrna33460	NA	NA	Q46QA5	Peptide chain release factor 3	AT1G62750.1	Translation elongation factor EFG/EF2 protein 	LOC_Os06g05250.3	"GTP-binding protein GUF1, putative, expressed"	Medtr8g106340.1	"Elongation factor G, III and V "	NA	NA	NA
PtpAffx.217973.1.S1_at	R	R	pmrna33461	pmrna33461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217974.1.S1_at	R	R	pmrna33462	pmrna33462	NA	NA	P37734	Molybdate-binding periplasmic protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217977.1.S1_at	R	R	pmrna33466	pmrna33466	NA	NA	Q57306	Probable ABC transporter permease protein HI_0355	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217978.1.S1_at	R	R	pmrna33469	pmrna33469	NA	NA	Q1LS20	Adenosylhomocysteinase	AT3G23810.1	S-adenosyl-l-homocysteine (SAH) hydrolase 2 	LOC_Os11g26850.2	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr4g132640.1	S-adenosyl-L-homocysteine hydrolase 	NA	NA	NA
PtpAffx.217983.1.S1_at	R	R	pmrna33478	pmrna33478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217985.1.S1_at	R	R	pmrna33480	pmrna33480	NA	NA	Q8Y0K4	Molybdenum cofactor biosynthesis protein A	AT2G31955.3	cofactor of nitrate reductase and xanthine dehydrogenase 2 	LOC_Os12g32230.2	"molybdenum cofactor biosynthesis protein 1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217987.1.S1_at	R	R	pmrna33482	pmrna33482	NA	NA	B1Y547	Chromosomal replication initiator protein dnaA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217988.1.S1_at	R	R	pmrna33483	pmrna33483	NA	NA	Q1LWH4	Fanconi-associated nuclease 1	AT1G48360.2	"zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides "	LOC_Os06g07490.1	"HIRAN domain containing protein, putative, expressed"	Medtr7g022150.1	"Zinc finger, Rad18-type putative; "	NA	NA	NA
PtpAffx.217989.1.S1_at	R	R	pmrna33484	pmrna33484	NA	NA	P65010	Uncharacterized protein Mb2598c	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217990.1.S1_at	R	R	pmrna33485	pmrna33485	NA	NA	P44894	Fumarate reductase flavoprotein subunit	AT5G66760.1	succinate dehydrogenase 1-1 	LOC_Os07g04240.1	"succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed"	Medtr5g019940.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; "	NA	NA	NA
PtpAffx.217991.1.S1_at	R	R	pmrna33486	pmrna33486	NA	NA	Q58010	Uncharacterized protein MJ0590	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217992.1.S1_at	R	R	pmrna33487	pmrna33487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217993.1.S1_at	R	R	pmrna33488	pmrna33488	NA	NA	P05444	ClpA homolog protein	AT3G48870.2	Clp ATPase 	LOC_Os12g12850.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	NA	NA	NA
PtpAffx.217994.1.S1_at	R	R	pmrna33489	pmrna33489	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217995.1.S1_at	R	R	pmrna33490	pmrna33490	NA	NA	C4L816	Deoxyuridine 5'-triphosphate nucleotidohydrolase	AT3G46940.1	DUTP-PYROPHOSPHATASE-LIKE 1 	LOC_Os03g46640.1	"deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217996.1.S1_at	R	R	pmrna33491	pmrna33491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217997.1.S1_at	R	R	pmrna33493	pmrna33493	NA	NA	P0AFA5	Bacteriophage N4 adsorption protein B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.217998.1.S1_at	R	R	pmrna33494	pmrna33494	NA	NA	P45103	Uncharacterized protein HI_1198	AT3G01920.1	DHBP synthase RibB-like alpha/beta domain 	LOC_Os08g41910.1	"Sua5/YciO/YrdC/YwlC family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.217999.1.S1_at	R	R	pmrna33495	pmrna33495	NA	NA	P64676	Uncharacterized protein Mb0037c	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218001.1.S1_at	R	R	pmrna33497	pmrna33497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218002.1.S1_at	R	R	pmrna33498	pmrna33498	NA	NA	P21630	High-affinity branched-chain amino acid transport ATP-binding protein BraG	AT2G41700.2	ATP-binding cassette A1 	LOC_Os06g48060.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g112400.1	AAA ATPase 	NA	NA	NA
PtpAffx.218003.1.S1_at	R	R	pmrna33499	pmrna33499	NA	NA	P21629	High-affinity branched-chain amino acid transport ATP-binding protein BraF	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os06g48060.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	NA	NA
PtpAffx.218004.1.S1_at	R	R	pmrna33500	pmrna33500	NA	NA	A1VM73	NADH-quinone oxidoreductase subunit N	ATMG01320.1	NADH dehydrogenase 2B 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr1g007140.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.218005.1.S1_at	R	R	pmrna33501	pmrna33501	NA	NA	P0A0Z6	Penicillin-binding protein 1A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218007.1.S1_at	R	R	pmrna33503	pmrna33503	NA	NA	Q1LS20	Adenosylhomocysteinase	AT4G13940.4	S-adenosyl-L-homocysteine hydrolase 	LOC_Os11g26850.3	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr4g133260.1	S-adenosyl-L-homocysteine hydrolase; 	NA	NA	NA
PtpAffx.218008.1.S1_at	R	R	pmrna33504	pmrna33504	NA	NA	O31620	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	AT1G22940.1	"thiamin biosynthesis protein, putative "	LOC_Os12g09000.1	"phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed"	Medtr2g006430.1	Thiamine monophosphate synthase; Phosphomethylpyrimidine kinase; 	NA	NA	NA
PtpAffx.218011.1.S1_at	R	R	pmrna33507	pmrna33507	NA	NA	P63883	N-acetylmuramoyl-L-alanine amidase AmiC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218012.1.S1_at	R	R	pmrna33508	pmrna33508	NA	NA	P16931	HTH-type transcriptional regulator dgdR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218033.1.S1_at	R	R	pmrna33544	pmrna33544	NA	NA	P31049	Uncharacterized methyltransferase in lpd-3 5'region	NA	NA	LOC_Os07g29220.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.218034.1.S1_at	R	R	pmrna33545	pmrna33545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218036.1.S1_at	R	R	pmrna33548	pmrna33548	NA	NA	Q9FS87	"Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment)"	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.2	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	NA	NA	NA
PtpAffx.218037.1.S1_at	R	R	pmrna33549	pmrna33549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218038.1.S1_at	R	R	pmrna33550	pmrna33550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218040.1.S1_at	R	R	pmrna33552	pmrna33552	NA	NA	P13512	Cobalt-zinc-cadmium resistance protein CzcD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218044.1.S1_at	R	R	pmrna33556	pmrna33556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218045.1.S1_at	R	R	pmrna33557	pmrna33557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218050.1.S1_at	R	R	pmrna33567	pmrna33567	NA	NA	A1W8Y5	SsrA-binding protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218052.1.S1_at	R	R	pmrna33569	pmrna33569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218054.1.S1_at	R	R	pmrna33572	pmrna33572	NA	NA	P25888	ATP-dependent RNA helicase rhlE	AT5G63120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g41715.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g133130.1	"Helicase, C-terminal; ; "	NA	NA	NA
PtpAffx.218055.1.S1_at	R	R	pmrna33574	pmrna33574	NA	NA	P17922	Phenylalanyl-tRNA synthetase beta chain	NA	NA	LOC_Os05g48510.2	"phenylalanyl-tRNA synthetase beta chain, putative, expressed"	Medtr8g115440.2	"Phenylalanyl-tRNA synthetase, beta subunit archae/euk cytosolic "	NA	NA	NA
PtpAffx.218057.1.S1_at	R	R	pmrna33576	pmrna33576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218059.1.S1_at	R	R	pmrna33578	pmrna33578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218064.1.S1_at	R	R	pmrna33585	pmrna33585	NA	NA	P44567	Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218066.1.S1_at	R	R	pmrna33587	pmrna33587	NA	NA	P31741	General secretion pathway protein E	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218068.1.S1_at	R	R	pmrna33589	pmrna33589	NA	NA	P30843	Transcriptional regulatory protein BasR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218069.1.S1_at	R	R	pmrna33590	pmrna33590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218070.1.S1_at	R	R	pmrna33591	pmrna33591	NA	NA	A9BQJ1	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG	AT2G13440.1	glucose-inhibited division family A protein 	LOC_Os01g72980.1	"tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed"	Medtr4g143160.1	Glucose-inhibited division protein A 	NA	NA	NA
PtpAffx.218073.1.S1_at	R	R	pmrna33594	pmrna33594	NA	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.3	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.2	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	NA	NA	NA
PtpAffx.218075.1.S1_at	R	R	pmrna33596	pmrna33596	NA	NA	O17732	Pyruvate carboxylase 1	AT5G35360.3	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	NA	NA	NA
PtpAffx.218076.1.S1_at	R	R	pmrna33597	pmrna33597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218089.1.S1_at	R	R	pmrna33612	pmrna33612	NA	NA	Q1LRW2	C4-dicarboxylate transport protein 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218093.1.S1_at	R	R	pmrna33616	pmrna33616	NA	NA	P38054	Cation efflux system protein CusA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218095.1.S1_at	R	R	pmrna33618	pmrna33618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218096.1.S1_at	R	R	pmrna33619	pmrna33619	NA	NA	Q12EY5	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218097.1.S1_at	R	R	pmrna33620	pmrna33620	NA	NA	Q12EY5	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	LOC_Os03g52180.1	"4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.218109.1.S1_at	R	R	pmrna33636	pmrna33636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218110.1.S1_at	R	R	pmrna33637	pmrna33637	NA	NA	P38054	Cation efflux system protein CusA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218113.1.S1_at	R	R	pmrna33640	pmrna33640	NA	NA	P09339	Aconitate hydratase	AT4G35830.1	aconitase 1 	LOC_Os03g04410.1	"aconitate hydratase protein, putative, expressed"	Medtr1g090130.1	"Aconitate hydratase, N-terminal; ; ; ; "	NA	NA	NA
PtpAffx.218114.1.S1_at	R	R	pmrna33641	pmrna33641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218116.1.S1_at	R	R	pmrna33644	pmrna33644	NA	NA	Q9N1F5	Glutathione S-transferase omega-1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218117.1.S1_at	R	R	pmrna33645	pmrna33645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218121.1.S1_at	R	R	pmrna33650	pmrna33650	NA	NA	Q6GDP1	Copper-exporting P-type ATPase A	AT5G44790.1	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) 	LOC_Os06g45500.1	"copper-transporting ATPase, putative, expressed"	Medtr4g089740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	NA	NA	NA
PtpAffx.218124.1.S1_at	R	R	pmrna33653	pmrna33653	NA	NA	P44736	Ribose transport system permease protein rbsC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218135.1.S1_at	R	R	pmrna33665	pmrna33665	NA	NA	P0A2S2	Pyruvate dehydrogenase complex repressor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218136.1.S1_at	R	R	pmrna33666	pmrna33666	NA	NA	Q8XZ83	Carbamoyl-phosphate synthase large chain	AT1G29900.1	carbamoyl phosphate synthetase B 	LOC_Os01g38970.1	"carbamoyl-phosphate synthase large chain, putative, expressed"	Medtr2g111290.1	"Carbamoyl-phosphate synthase, large subunit, glutamine-dependent; MGS-like; "	NA	NA	NA
PtpAffx.218137.1.S1_at	R	R	pmrna33667	pmrna33667	NA	NA	Q53196	Uncharacterized aminotransferase y4uB	AT3G22200.2	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g10510.2	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	NA	NA
PtpAffx.218140.1.S1_at	R	R	pmrna33671	pmrna33671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218143.1.S1_at	R	R	pmrna33674	pmrna33674	NA	NA	P08982	Osmolarity sensor protein envZ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218150.1.S1_at	R	R	pmrna33681	pmrna33681	NA	NA	Q54FB7	Xanthine dehydrogenase	AT4G34890.1	xanthine dehydrogenase 1 	LOC_Os03g31550.2	"aldehyde oxidase, putative, expressed"	Medtr2g117560.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	NA	NA	NA
PtpAffx.218151.1.S1_at	R	R	pmrna33682	pmrna33682	NA	NA	Q57772	Putative permease MJ0326	AT3G10960.1	AZA-guanine resistant1 	LOC_Os05g26840.1	"permease domain containing protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.218152.1.S1_at	R	R	pmrna33683	pmrna33683	NA	NA	C5CM20	Anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218153.1.S1_at	R	R	pmrna33684	pmrna33684	NA	NA	P0AFT1	Uncharacterized metalloprotease yebA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218154.1.S1_at	R	R	pmrna33685	pmrna33685	NA	NA	Q10YI1	Dihydrodipicolinate reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218184.1.S1_at	R	R	pmrna33731	pmrna33731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218186.1.S1_at	R	R	pmrna33733	pmrna33733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218187.1.S1_at	R	R	pmrna33734	pmrna33734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218188.1.S1_at	R	R	pmrna33735	pmrna33735	NA	NA	Q9KQF5	DNA topoisomerase 3	AT4G31210.1	"DNA topoisomerase, type IA, core "	NA	NA	Medtr1g010510.1	"DNA topoisomerase I, ATP-binding; TOPRIM; ; "	NA	NA	NA
PtpAffx.218191.1.S1_at	R	R	pmrna33739	pmrna33739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218195.1.S1_at	R	R	pmrna33743	pmrna33743	NA	NA	A3CTT5	Argininosuccinate lyase	AT5G10920.1	L-Aspartase-like family protein 	LOC_Os03g19280.1	"argininosuccinate lyase, putative, expressed"	Medtr3g149500.1	Fumarate lyase; Argininosuccinate lyase 	NA	NA	NA
PtpAffx.218196.1.S1_at	R	R	pmrna33745	pmrna33745	NA	NA	P33990	Squalene--hopene cyclase	AT1G78970.1	lupeol synthase 1 	LOC_Os11g08569.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	NA	NA
PtpAffx.218197.1.S1_at	R	R	pmrna33746	pmrna33746	NA	NA	Q7W039	Monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218199.1.S1_at	R	R	pmrna33748	pmrna33748	NA	NA	Q9ZD73	Uncharacterized protein RP471	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218201.1.S1_at	R	R	pmrna33750	pmrna33750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218202.1.S1_at	R	R	pmrna33751	pmrna33751	NA	NA	O87816	Protein fdhD homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218203.1.S1_at	R	R	pmrna33752	pmrna33752	NA	NA	Q1LHM2	Glycine dehydrogenase [decarboxylating]	AT4G33010.2	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	NA	NA	NA
PtpAffx.218204.1.S1_at	R	R	pmrna33753	pmrna33753	NA	NA	O86029	Uncharacterized HTH-type transcriptional regulator RB1450	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218207.1.S1_at	R	R	pmrna33756	pmrna33756	NA	NA	P0AEF8	Dipeptide transport system permease protein dppB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218208.1.S1_at	R	R	pmrna33757	pmrna33757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218209.1.S1_at	R	R	pmrna33758	pmrna33758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218213.1.S1_at	R	R	pmrna33762	pmrna33762	NA	NA	P06617	Tryptophan 2-monooxygenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218214.1.S1_at	R	R	pmrna33763	pmrna33763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218217.1.S1_at	R	R	pmrna33766	pmrna33766	NA	NA	P52095	"Lysine decarboxylase, constitutive"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218218.1.S1_at	R	R	pmrna33768	pmrna33768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218219.1.S1_at	R	R	pmrna33769	pmrna33769	NA	NA	A9BUK7	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218222.1.S1_at	R	R	pmrna33772	pmrna33772	NA	NA	Q9ZJD1	36 kDa antigen	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218226.1.S1_at	R	R	pmrna33776	pmrna33776	scaffold_1:17293713-17294287(+) (9)//scaffold_10:6931110-6931684(-) (10)//scaffold_13:8080442-8080836(+) (9)//scaffold_13:9712710-9713284(-) (9)//scaffold_19:8313808-8314382(-) (10)//scaffold_19:8384108-8384682(+) (9)//scaffold_23:22311-22885(+) (10)//scaffold_3:4468707-4469281(-) (10)//scaffold_3:5485945-5486519(+) (10)//scaffold_40:14088-14662(+) (9)//scaffold_651:3395-3969(+) (10)//scaffold_8:17671748-17672322(-) (9)//scaffold_9:257785-258359(-) (9)//scaffold_9:478445-478730(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218229.1.S1_at	R	R	pmrna33779	pmrna33779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218233.1.S1_at	R	R	pmrna33783	pmrna33783	NA	NA	Q8XQC8	Probable spermidine synthase 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218234.1.S1_at	R	R	pmrna33785	pmrna33785	NA	NA	A9JS71	"Enoyl-CoA hydratase domain-containing protein 3, mitochondrial"	AT4G16210.1	enoyl-CoA hydratase/isomerase A 	LOC_Os02g43720.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g137400.1	Enoyl-CoA hydratase/isomerase 	NA	NA	NA
PtpAffx.218238.1.S1_at	R	R	pmrna33790	pmrna33790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218239.1.S1_at	R	R	pmrna33791	pmrna33791	NA	NA	O69054	Phosphonate dehydrogenase	AT1G17745.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os06g44460.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	NA	NA	NA
PtpAffx.218240.1.S1_at	R	R	pmrna33792	pmrna33792	NA	NA	P29252	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	AT4G30000.2	Dihydropterin pyrophosphokinase / Dihydropteroate synthase 	LOC_Os07g42632.3	"folic acid synthesis protein, putative, expressed"	Medtr5g047600.1	"Dihydropteroate synthase, DHPS; 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK "	NA	NA	NA
PtpAffx.218242.1.S1_at	R	R	pmrna33794	pmrna33794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218249.1.S1_at	R	R	pmrna33801	pmrna33801	NA	NA	Q9WWZ8	Toluene efflux pump outer membrane protein ttgC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218250.1.S1_at	R	R	pmrna33802	pmrna33802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218251.1.S1_at	R	R	pmrna33803	pmrna33803	NA	NA	P23620	Phosphate regulon transcriptional regulatory protein phoB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218252.1.S1_at	R	R	pmrna33804	pmrna33804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218257.1.S1_at	R	R	pmrna33809	pmrna33809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218261.1.S1_at	R	R	pmrna33813	pmrna33813	NA	NA	P25338	Uncharacterized endoplasmic reticulum membrane protein YGL010W	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218264.1.S1_at	R	R	pmrna33816	pmrna33816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218265.1.S1_at	R	R	pmrna33817	pmrna33817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218267.1.S1_at	R	R	pmrna33819	pmrna33819	NA	NA	P0A3B4	GTP-binding protein TypA/BipA	AT2G31060.3	elongation factor family protein 	LOC_Os01g54910.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	NA	NA	NA
PtpAffx.218269.1.S1_at	R	R	pmrna33822	pmrna33822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218270.1.S1_at	R	R	pmrna33823	pmrna33823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218271.1.S1_at	R	R	pmrna33824	pmrna33824	NA	NA	P45158	Exodeoxyribonuclease V alpha chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218298.1.S1_at	R	R	pmrna33861	pmrna33861	NA	NA	P45463	HTH-type transcriptional activator ttdR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218302.1.S1_at	R	R	pmrna33869	pmrna33869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218303.1.S1_at	R	R	pmrna33870	pmrna33870	NA	NA	Q01263	Hydantoin utilization protein B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218305.1.S1_at	R	R	pmrna33873	pmrna33873	NA	NA	Q7WKW5	Acetylornithine aminotransferase 1	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	NA	NA
PtpAffx.218311.1.S1_at	R	R	pmrna33880	pmrna33880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218315.1.S1_at	R	R	pmrna33885	pmrna33885	NA	NA	Q59447	Cysteine synthase	AT5G28020.6	cysteine synthase D2 	LOC_Os01g74650.3	"cysteine synthase, mitochondrial precursor, putative, expressed"	Medtr5g006410.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	NA	NA	NA
PtpAffx.218318.1.S1_at	R	R	pmrna33889	pmrna33889	NA	NA	A1VRP1	"Tryptophan 2,3-dioxygenase"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218319.1.S1_at	R	R	pmrna33890	pmrna33890	NA	NA	P39918	Replication-associated recombination protein A	AT1G24290.1	AAA-type ATPase family protein 	NA	NA	Medtr5g106490.1	Ubiquitin-associated; AAA ATPase 	NA	NA	NA
PtpAffx.218320.1.S1_at	R	R	pmrna33891	pmrna33891	NA	NA	P70791	UPF0065 protein in the TAR-I ttuE-ttuC' intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218321.1.S1_at	R	R	pmrna33892	pmrna33892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218322.1.S1_at	R	R	pmrna33893	pmrna33893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218326.1.S1_at	R	R	pmrna33897	pmrna33897	NA	NA	P0ACD7	NifU-like protein	AT4G22220.1	SufE/NifU family protein 	LOC_Os05g49300.1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"	Medtr3g114000.1	FeS cluster assembly scaffold IscU 	NA	NA	NA
PtpAffx.218327.1.S1_at	R	R	pmrna33898	pmrna33898	NA	NA	Q3YZ24	Iron-binding protein iscA	AT2G16710.1	Iron-sulphur cluster biosynthesis family protein 	LOC_Os01g01610.1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"	Medtr4g141040.1	HesB/YadR/YfhF 	NA	NA	NA
PtpAffx.218328.1.S1_at	R	R	pmrna33899	pmrna33899	NA	NA	P77171	Uncharacterized HTH-type transcriptional regulator ydcI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218329.1.S1_at	R	R	pmrna33901	pmrna33901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218331.1.S1_at	R	R	pmrna33903	pmrna33903	NA	NA	Q56072	Probable amino-acid metabolite efflux pump	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218333.1.S1_at	R	R	pmrna33905	pmrna33905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218339.1.S1_at	R	R	pmrna33914	pmrna33914	NA	NA	O66536	Uncharacterized HIT-like protein aq_141	AT1G31160.1	HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 	LOC_Os01g59750.1	"histidine triad family protein, putative, expressed"	Medtr6g017890.1	Histidine triad (HIT) protein; 	NA	NA	NA
PtpAffx.218346.1.S1_at	R	R	pmrna33922	pmrna33922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218347.1.S1_at	R	R	pmrna33923	pmrna33923	NA	NA	Q65RX0	Glutathione biosynthesis bifunctional protein gshAB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218350.1.S1_at	R	R	pmrna33928	pmrna33928	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218351.1.S1_at	R	R	pmrna33929	pmrna33929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218356.1.S1_at	R	R	pmrna33935	pmrna33935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218359.1.S1_at	R	R	pmrna33938	pmrna33938	NA	NA	A9BXV6	tRNA 2-thiocytidine biosynthesis protein TtcA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218360.1.S1_at	R	R	pmrna33939	pmrna33939	NA	NA	A9BXV6	tRNA 2-thiocytidine biosynthesis protein TtcA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218361.1.S1_at	R	R	pmrna33940	pmrna33940	NA	NA	P39829	D-galactarate dehydratase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218362.1.S1_at	R	R	pmrna33941	pmrna33941	NA	NA	P0ACZ8	Transcriptional regulatory protein CusR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218379.1.S1_at	R	R	pmrna33974	pmrna33974	NA	NA	A1VDD3	LL-diaminopimelate aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os01g65090.2	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g107550.1	"Aminotransferase, class I and II; "	NA	NA	NA
PtpAffx.218381.1.S1_at	R	R	pmrna33976	pmrna33976	NA	NA	B9F3B6	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.2	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125020.1	"Betaine aldehyde dehydrogenase 1, chloroplast precursor, putative "	NA	NA	NA
PtpAffx.218383.1.S1_at	R	R	pmrna33978	pmrna33978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218390.1.S1_at	R	R	pmrna33985	pmrna33985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218391.1.S1_at	R	R	pmrna33986	pmrna33986	NA	NA	P03646	Spike protein H	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218392.1.S1_at	R	R	pmrna33987	pmrna33987	NA	NA	Q8IZY2	ATP-binding cassette sub-family A member 7	AT3G47750.1	ATP binding cassette subfamily A4 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218393.1.S1_at	R	R	pmrna33988	pmrna33988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218395.1.S1_at	R	R	pmrna33990	pmrna33990	NA	NA	P52665	HTH-type transcriptional regulator BudR (Fragment)	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218418.1.S1_at	R	R	pmrna34025	pmrna34025	NA	NA	P43012	DNA topoisomerase 1	AT4G31210.1	"DNA topoisomerase, type IA, core "	LOC_Os06g16980.2	"DNA topoisomerase I family protein, expressed"	Medtr1g010570.1	DNA topoisomerase I; TOPRIM; ; 	NA	NA	NA
PtpAffx.218419.1.S1_at	R	R	pmrna34026	pmrna34026	NA	NA	P45004	Anaerobic dimethyl sulfoxide reductase chain A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218420.1.S1_at	R	R	pmrna34027	pmrna34027	NA	NA	Q58010	Uncharacterized protein MJ0590	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218424.1.S1_at	R	R	pmrna34031	pmrna34031	NA	NA	B5EK18	Tryptophan synthase beta chain	AT5G54810.1	tryptophan synthase beta-subunit 1 	LOC_Os08g04180.1	"tryptophan synthase beta chain 1, putative, expressed"	Medtr3g064270.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	NA	NA	NA
PtpAffx.218426.1.S1_at	R	R	pmrna34034	pmrna34034	NA	NA	Q9I194	Acyl-homoserine lactone acylase pvdQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218431.1.S1_at	R	R	pmrna34041	pmrna34041	NA	NA	Q00934	Type 4 fimbriae expression regulatory protein pilR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218432.1.S1_at	R	R	pmrna34042	pmrna34042	NA	NA	P43786	Uncharacterized protein HI_1159	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218433.1.S1_at	R	R	pmrna34043	pmrna34043	NA	NA	Q122D1	D-(-)-3-hydroxybutyrate oligomer hydrolase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218434.1.S1_at	R	R	pmrna34044	pmrna34044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218449.1.S1_at	R	R	pmrna34071	pmrna34071	NA	NA	Q57180	Uncharacterized ABC transporter ATP-binding protein HI_1051	AT3G28860.1	ATP binding cassette subfamily B19 	LOC_Os06g03770.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g083810.1	Cyclic peptide transporter 	NA	NA	NA
PtpAffx.218453.1.S1_at	R	R	pmrna34075	pmrna34075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218455.1.S1_at	R	R	pmrna34077	pmrna34077	NA	NA	Q0I2G9	Peptide chain release factor 3	AT2G45030.1	Translation elongation factor EFG/EF2 protein 	LOC_Os03g36780.1	"elongation factor, putative, expressed"	Medtr2g025730.1	"Translation factor; Elongation factor G, III and V "	NA	NA	NA
PtpAffx.218456.1.S1_at	R	R	pmrna34078	pmrna34078	NA	NA	P45857	Acyl-CoA dehydrogenase	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.2	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g081040.1	"Acyl-CoA dehydrogenase, N-terminal; "	NA	NA	NA
PtpAffx.218459.1.S1_at	R	R	pmrna34081	pmrna34081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218460.1.S1_at	R	R	pmrna34083	pmrna34083	NA	NA	O31826	Putative acyl-CoA synthetase yngI	AT1G62940.1	acyl-CoA synthetase 5 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr5g027670.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.218463.1.S1_at	R	R	pmrna34087	pmrna34087	NA	NA	O86222	Uncharacterized protein HI_0220.2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218465.1.S1_at	R	R	pmrna34089	pmrna34089	NA	NA	B2IDU5	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218470.1.S1_at	R	R	pmrna34098	pmrna34098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218471.1.S1_at	R	R	pmrna34099	pmrna34099	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218472.1.S1_at	R	R	pmrna34100	pmrna34100	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218473.1.S1_at	R	R	pmrna34101	pmrna34101	NA	NA	Q8XCG6	"3'(2'),5'-bisphosphate nucleotidase CysQ"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218475.1.S1_at	R	R	pmrna34103	pmrna34103	NA	NA	A9C0B9	Alanyl-tRNA synthetase	AT5G22800.1	"Alanyl-tRNA synthetase, class IIc "	LOC_Os06g13660.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr3g163940.1	"Alanyl-tRNA synthetase, class IIc "	NA	NA	NA
PtpAffx.218478.1.S1_at	R	R	pmrna34106	pmrna34106	NA	NA	Q1LPI4	Cell division protein ftsB homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218479.1.S1_at	R	R	pmrna34107	pmrna34107	NA	NA	O31603	Uncharacterized membrane protein yjbE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218480.1.S1_at	R	R	pmrna34108	pmrna34108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218482.1.S1_at	R	R	pmrna34112	pmrna34112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218485.1.S1_at	R	R	pmrna34115	pmrna34115	NA	NA	Q9ZH79	Protein tonB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218486.1.S1_at	R	R	pmrna34116	pmrna34116	NA	NA	Q0I2U5	UPF0234 protein HS_0688	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218487.1.S1_at	R	R	pmrna34117	pmrna34117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218488.1.S1_at	R	R	pmrna34119	pmrna34119	NA	NA	P45092	Arginine transport ATP-binding protein ArtP	AT1G67940.1	non-intrinsic ABC protein 3 	LOC_Os03g46740.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	NA	NA
PtpAffx.218494.1.S1_at	R	R	pmrna34137	pmrna34137	NA	NA	A5GI62	Ribosome maturation factor rimM	AT5G46420.1	16S rRNA processing protein RimM family 	LOC_Os05g49130.2	"16S rRNA processing protein RimM containing protein, expressed"	Medtr4g136560.1	UTP--glucose-1-phosphate uridylyltransferase; 16S rRNA processing protein RimM 	NA	NA	NA
PtpAffx.218501.1.S1_at	R	R	pmrna34149	pmrna34149	NA	NA	P0C188	NAD(P) transhydrogenase subunit beta	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218502.1.S1_at	R	R	pmrna34150	pmrna34150	NA	NA	P02942	Methyl-accepting chemotaxis protein I	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218506.1.S1_at	R	R	pmrna34154	pmrna34154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218507.1.S1_at	R	R	pmrna34156	pmrna34156	NA	NA	P96825	Putative short-chain type dehydrogenase/reductase Rv0148	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g30760.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.218508.1.S1_at	R	R	pmrna34157	pmrna34157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218509.1.S1_at	R	R	pmrna34158	pmrna34158	NA	NA	P94177	Cation efflux system protein CzcA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218510.1.S1_at	R	R	pmrna34159	pmrna34159	NA	NA	Q9WYG0	Uncharacterized oxidoreductase TM_0325	AT1G52340.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g18740.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.218511.1.S1_at	R	R	pmrna34160	pmrna34160	NA	NA	Q1LIL8	Ribosomal RNA small subunit methyltransferase H	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218512.1.S1_at	R	R	pmrna34161	pmrna34161	NA	NA	B3R6W8	Protein MraZ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218514.1.S1_at	R	R	pmrna34165	pmrna34165	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g005130.1	hypothetical protein 	NA	NA	NA
PtpAffx.218516.1.S1_at	R	R	pmrna34168	pmrna34168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218522.1.S1_at	R	R	pmrna34175	pmrna34175	NA	NA	P15713	Non-hemolytic phospholipase C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218523.1.S1_at	R	R	pmrna34176	pmrna34176	NA	NA	P0C7J0	"dTDP-glucose 4,6-dehydratase"	AT1G53500.1	NAD-dependent epimerase/dehydratase family protein 	LOC_Os03g17000.4	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	NA	NA	NA
PtpAffx.218524.1.S1_at	R	R	pmrna34177	pmrna34177	NA	NA	P55254	Glucose-1-phosphate thymidylyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218525.1.S1_at	R	R	pmrna34178	pmrna34178	NA	NA	Q9HU21	"dTDP-4-dehydrorhamnose 3,5-epimerase"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218526.1.S1_at	R	R	pmrna34179	pmrna34179	NA	NA	P37781	Putative O-antigen transporter	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218540.1.S1_at	R	R	pmrna34199	pmrna34199	NA	NA	O84834	Ribonucleoside-diphosphate reductase subunit alpha	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218541.1.S1_at	R	R	pmrna34200	pmrna34200	NA	NA	Q8YM40	UPF0192 protein all5100	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218542.1.S1_at	R	R	pmrna34201	pmrna34201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218543.1.S1_at	R	R	pmrna34202	pmrna34202	NA	NA	P64838	Uncharacterized membrane protein Mb1436	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218544.1.S1_at	R	R	pmrna34203	pmrna34203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218545.1.S1_at	R	R	pmrna34204	pmrna34204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218547.1.S1_at	R	R	pmrna34207	pmrna34207	NA	NA	Q7D547	Putative conjugal transfer protein Rv3659c/MT3759	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218554.1.S1_at	R	R	pmrna34215	pmrna34215	NA	NA	P44646	UPF0118 membrane protein HI_0338	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218558.1.S1_at	R	R	pmrna34219	pmrna34219	NA	NA	Q56347	Putative dicarboxylate transporter subunit (Fragment)	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218562.1.S1_at	R	R	pmrna34224	pmrna34224	NA	NA	O34580	ATP-dependent DNA helicase pcrA	NA	NA	LOC_Os07g30980.1	"uvrD/REP helicase family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.218563.1.S1_at	R	R	pmrna34225	pmrna34225	NA	NA	P29939	Uncharacterized transporter in cobO 3'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218564.1.S1_at	R	R	pmrna34226	pmrna34226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218565.1.S1_at	R	R	pmrna34227	pmrna34227	NA	NA	P0ABJ8	Cytochrome o ubiquinol oxidase protein CyoD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218566.1.S1_at	R	R	pmrna34228	pmrna34228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218567.1.S1_at	R	R	pmrna34229	pmrna34229	NA	NA	Q8XZ24	Phenylalanyl-tRNA synthetase beta chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218568.1.S1_at	R	R	pmrna34230	pmrna34230	NA	NA	A9C3D0	Phenylalanyl-tRNA synthetase alpha chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218569.1.S1_at	R	R	pmrna34231	pmrna34231	NA	NA	A6T1G0	Integration host factor subunit beta	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218570.1.S1_at	R	R	pmrna34232	pmrna34232	NA	NA	P13510	Cobalt-zinc-cadmium resistance protein CzcB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218571.1.S1_at	R	R	pmrna34233	pmrna34233	NA	NA	P43701	DNA gyrase subunit B	AT3G10270.1	DNA GYRASE B1 	LOC_Os01g16290.1	"DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed"	Medtr7g106810.1	DNA gyrase B; ; ; 	NA	NA	NA
PtpAffx.218573.1.S1_at	R	R	pmrna34235	pmrna34235	NA	NA	Q75WB5	5-oxoprolinase	NA	NA	LOC_Os01g73514.1	"5-oxoprolinase, putative, expressed"	Medtr4g121000.1	"Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal "	NA	NA	NA
PtpAffx.218575.1.S1_at	R	R	pmrna34237	pmrna34237	NA	NA	O67604	Riboflavin synthase alpha chain	AT2G20690.1	lumazine-binding family protein 	LOC_Os12g35580.2	"riboflavin synthase alpha chain, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.218578.1.S1_at	R	R	pmrna34241	pmrna34241	NA	NA	Q474Y6	Cobyric acid synthase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218579.1.S1_at	R	R	pmrna34242	pmrna34242	NA	NA	P44483	Putative TRAP transporter large permease protein HI_0050	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218586.1.S1_at	R	R	pmrna34253	pmrna34253	NA	NA	P76249	Leucine efflux protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218591.1.S1_at	R	R	pmrna34259	pmrna34259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218592.1.S1_at	R	R	pmrna34260	pmrna34260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218593.1.S1_at	R	R	pmrna34261	pmrna34261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218595.1.S1_at	R	R	pmrna34263	pmrna34263	NA	NA	P71989	Succinate-semialdehyde dehydrogenase [NADP+] 1	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os08g32870.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	NA	NA	NA
PtpAffx.218601.1.S1_at	R	R	pmrna34270	pmrna34270	NA	NA	P45315	Probable protease sohB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218615.1.S1_at	R	R	pmrna34297	pmrna34297	scaffold_1:2876544-2877271(+) (10)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G57970.2	DNA glycosylase superfamily protein 	LOC_Os04g42290.1	"methyladenine glycosylase, putative, expressed"	Medtr8g145370.1	Methyladenine glycosylase 	NA	NA	NA
PtpAffx.218619.1.S1_at	R	R	pmrna34308	pmrna34308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218620.1.S1_at	R	R	pmrna34309	pmrna34309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218621.1.S1_at	R	R	pmrna34310	pmrna34310	NA	NA	P94400	Putative metal chaperone yciC	AT1G80480.1	plastid transcriptionally active 17 	LOC_Os04g51100.1	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	NA	NA	NA
PtpAffx.218624.1.S1_at	R	R	pmrna34314	pmrna34314	NA	NA	P42435	Nitrite reductase [NAD(P)H]	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218625.1.S1_at	R	R	pmrna34315	pmrna34315	NA	NA	Q8Y0D3	UPF0324 membrane protein RSc1111	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218626.1.S1_at	R	R	pmrna34316	pmrna34316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218628.1.S1_at	R	R	pmrna34319	pmrna34319	NA	NA	P39879	Uncharacterized protein PA2026	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218630.1.S1_at	R	R	pmrna34321	pmrna34321	NA	NA	O31215	Cytochrome b	ATMG00220.1	apocytochrome b 	LOC_Os10g21324.1	"cytochrome b6, putative"	Medtr1g006930.1	"Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal "	NA	NA	NA
PtpAffx.218631.1.S1_at	R	R	pmrna34322	pmrna34322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218633.1.S1_at	R	R	pmrna34326	pmrna34326	NA	NA	Q8Y015	NAD-dependent deacetylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218634.1.S1_at	R	R	pmrna34327	pmrna34327	NA	NA	P77735	Uncharacterized oxidoreductase yajO	AT1G04690.1	potassium channel beta subunit 1 	LOC_Os11g42540.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g140860.1	Aldo/keto reductase 	NA	NA	NA
PtpAffx.218635.1.S1_at	R	R	pmrna34328	pmrna34328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218643.1.S1_at	R	R	pmrna34337	pmrna34337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218644.1.S1_at	R	R	pmrna34338	pmrna34338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218645.1.S1_at	R	R	pmrna34339	pmrna34339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218646.1.S1_at	R	R	pmrna34340	pmrna34340	NA	NA	Q9UJZ1	Stomatin-like protein 2	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	NA	NA	NA
PtpAffx.218647.1.S1_at	R	R	pmrna34341	pmrna34341	NA	NA	P23221	Transcriptional regulatory protein fixJ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218648.1.S1_at	R	R	pmrna34342	pmrna34342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218650.1.S1_at	R	R	pmrna34344	pmrna34344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218653.1.S1_at	R	R	pmrna34348	pmrna34348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218673.1.S1_at	R	R	pmrna34377	pmrna34377	NA	NA	P0A3B4	GTP-binding protein TypA/BipA	AT5G13650.2	elongation factor family protein 	LOC_Os02g18450.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	NA	NA	NA
PtpAffx.218674.1.S1_at	R	R	pmrna34379	pmrna34379	NA	NA	O82390	"Sodium-dependent phosphate transport protein 1, chloroplastic"	AT2G29650.1	phosphate transporter 4;1 	LOC_Os01g17240.1	"transporter, major facilitator family, putative, expressed"	AC233571_3.1	Major facilitator superfamily MFS_1 AC233571.2 15766-21806 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.218675.1.S1_at	R	R	pmrna34380	pmrna34380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218676.1.S1_at	R	R	pmrna34381	pmrna34381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218677.1.S1_at	R	R	pmrna34382	pmrna34382	NA	NA	Q9Z3S3	Probable oxidoreductase ordL	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218679.1.S1_at	R	R	pmrna34386	pmrna34386	NA	NA	Q8VPF3	3-oxoadipate CoA-transferase subunit A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218680.1.S1_at	R	R	pmrna34387	pmrna34387	NA	NA	Q9I3M9	Cytochrome c-type biogenesis protein CycH	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218682.1.S1_at	R	R	pmrna34389	pmrna34389	NA	NA	Q0I236	Probable cytosol aminopeptidase	AT2G24200.3	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	NA	NA	NA
PtpAffx.218683.1.S1_at	R	R	pmrna34390	pmrna34390	NA	NA	Q7TNG8	"Probable D-lactate dehydrogenase, mitochondrial"	AT5G06580.1	FAD-linked oxidases family protein 	LOC_Os07g06890.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	NA	NA
PtpAffx.218684.1.S1_at	R	R	pmrna34391	pmrna34391	NA	NA	Q44018	UPF0065 protein in gbd 5'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218685.1.S1_at	R	R	pmrna34392	pmrna34392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218687.1.S1_at	R	R	pmrna34395	pmrna34395	NA	NA	A7IMS5	UPF0059 membrane protein Xaut_4096	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218701.1.S1_at	R	R	pmrna34417	pmrna34417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218707.1.S1_at	R	R	pmrna34425	pmrna34425	NA	NA	Q8X7W7	Catecholate siderophore receptor fiu	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218708.1.S1_at	R	R	pmrna34430	pmrna34430	NA	NA	P0ABG4	Cell division protein ftsW	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218709.1.S1_at	R	R	pmrna34431	pmrna34431	NA	NA	P25275	Lipase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218710.1.S1_at	R	R	pmrna34432	pmrna34432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218711.1.S1_at	R	R	pmrna34433	pmrna34433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218712.1.S1_at	R	R	pmrna34434	pmrna34434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218717.1.S1_at	R	R	pmrna34439	pmrna34439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218729.1.S1_at	R	R	pmrna34452	pmrna34452	NA	NA	Q7A5H7	Sensor protein srrB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218730.1.S1_at	R	R	pmrna34453	pmrna34453	NA	NA	Q3YRP7	3-oxoacyl-[acyl-carrier-protein] synthase 3	AT1G62640.2	3-ketoacyl-acyl carrier protein synthase III 	LOC_Os04g55060.1	"3-oxoacyl-synthase III, chloroplast precursor, putative, expressed"	AC233655_6.1	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC233655.2 62222-64410 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.218731.1.S1_at	R	R	pmrna34454	pmrna34454	NA	NA	Q58EB4	"3-hydroxyisobutyryl-CoA hydrolase, mitochondrial"	AT5G65940.3	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.9	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	AC225519_17.1	Enoyl-CoA hydratase/isomerase AC225519.5 75949-70519 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.218733.1.S1_at	R	R	pmrna34456	pmrna34456	NA	NA	P22610	Type 4 prepilin-like proteins leader peptide-processing enzyme	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218734.1.S1_at	R	R	pmrna34457	pmrna34457	NA	NA	NA	NA	AT1G01770.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). 	LOC_Os07g27350.1	"atuA, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.218735.1.S1_at	R	R	pmrna34458	pmrna34458	NA	NA	A1W2Y5	Carboxylate-amine ligase Ajs_0357	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218737.1.S1_at	R	R	pmrna34460	pmrna34460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218739.1.S1_at	R	R	pmrna34462	pmrna34462	NA	NA	P17552	Protein ChrB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218740.1.S1_at	R	R	pmrna34463	pmrna34463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218741.1.S1_at	R	R	pmrna34464	pmrna34464	NA	NA	Q52109	Mercuric reductase	AT1G48030.2	mitochondrial lipoamide dehydrogenase 1 	LOC_Os01g22520.1	"dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	NA	NA	NA
PtpAffx.218744.1.S1_at	R	R	pmrna34467	pmrna34467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218745.1.S1_at	R	R	pmrna34468	pmrna34468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218746.1.S1_at	R	R	pmrna34469	pmrna34469	NA	NA	C5BAS5	tRNA-modifying protein ygfZ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218747.1.S1_at	R	R	pmrna34470	pmrna34470	NA	NA	P54422	Gamma-glutamyltranspeptidase	AT4G39650.1	gamma-glutamyl transpeptidase 2 	LOC_Os01g05810.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr6g093830.1	Gamma-glutamyltranspeptidase 	NA	NA	NA
PtpAffx.218749.1.S1_at	R	R	pmrna34472	pmrna34472	NA	NA	P30847	Signal transduction histidine-protein kinase BaeS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218757.1.S1_at	R	R	pmrna34483	pmrna34483	NA	NA	P44404	RNA polymerase sigma-32 factor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218758.1.S1_at	R	R	pmrna34484	pmrna34484	NA	NA	Q1LS06	tRNA 2-thiocytidine biosynthesis protein TtcA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218759.1.S1_at	R	R	pmrna34485	pmrna34485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218760.1.S1_at	R	R	pmrna34486	pmrna34486	NA	NA	Q51551	Dihydroorotase-like protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218761.1.S1_at	R	R	pmrna34487	pmrna34487	NA	NA	A1VU36	Phosphoribosylaminoimidazole-succinocarboxamide synthase	AT3G21110.2	purin 7 	LOC_Os09g29190.1	"phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed"	Medtr5g074460.1	SAICAR synthetase 	NA	NA	NA
PtpAffx.218764.1.S1_at	R	R	pmrna34490	pmrna34490	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218778.1.S1_at	R	R	pmrna34506	pmrna34506	NA	NA	Q9I426	Ubiquinol oxidase subunit 1	ATMG01360.1	cytochrome  oxidase 	LOC_Os12g33946.1	"cytochrome c oxidase subunit 1, putative"	Medtr1g006730.1	"Cytochrome c oxidase, subunit I "	NA	NA	NA
PtpAffx.218783.1.S1_at	R	R	pmrna34512	pmrna34512	NA	NA	Q9CLA9	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218784.1.S1_at	R	R	pmrna34513	pmrna34513	NA	NA	Q5RBB9	Ribosyldihydronicotinamide dehydrogenase [quinone]	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218786.1.S1_at	R	R	pmrna34515	pmrna34515	NA	NA	P13511	Cobalt-zinc-cadmium resistance protein CzcA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218797.1.S1_at	R	R	pmrna34533	pmrna34533	NA	NA	P11349	Respiratory nitrate reductase 1 beta chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218798.1.S1_at	R	R	pmrna34534	pmrna34534	NA	NA	Q48815	Protein helA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218801.1.S1_at	R	R	pmrna34538	pmrna34538	NA	NA	P31467	Phosphatase yieH	AT1G56500.1	haloacid dehalogenase-like hydrolase family protein 	LOC_Os01g55310.1	"haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed"	Medtr8g129000.1	Haloacid dehalogenase-like hydrolase 	NA	NA	NA
PtpAffx.218803.1.S1_at	R	R	pmrna34540	pmrna34540	NA	NA	Q48815	Protein helA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218804.1.S1_at	R	R	pmrna34541	pmrna34541	NA	NA	P0AAT5	Uncharacterized protein ybdG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218805.1.S1_at	R	R	pmrna34542	pmrna34542	NA	NA	P07658	Formate dehydrogenase H	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218806.1.S1_at	R	R	pmrna34543	pmrna34543	NA	NA	P19572	Diaminopimelate decarboxylase	AT5G11880.1	Pyridoxal-dependent decarboxylase family protein 	LOC_Os02g24354.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr5g022600.1	Diaminopimelate decarboxylase 	NA	NA	NA
PtpAffx.218807.1.S1_at	R	R	pmrna34544	pmrna34544	NA	NA	Q8XV51	Sulfoxide reductase heme-binding subunit yedZ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218809.1.S1_at	R	R	pmrna34546	pmrna34546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218811.1.S1_at	R	R	pmrna34548	pmrna34548	NA	NA	Q9CPK3	DNA polymerase III subunit alpha	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218812.1.S1_at	R	R	pmrna34549	pmrna34549	NA	NA	P57011	Cell division protein ftsY homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218830.1.S1_at	R	R	pmrna34569	pmrna34569	NA	NA	Q11KK9	Tryptophan synthase beta chain	AT5G54810.1	tryptophan synthase beta-subunit 1 	LOC_Os08g04180.1	"tryptophan synthase beta chain 1, putative, expressed"	Medtr3g068150.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	NA	NA	NA
PtpAffx.218831.1.S1_at	R	R	pmrna34570	pmrna34570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218835.1.S1_at	R	R	pmrna34575	pmrna34575	NA	NA	Q02TY9	UPF0312 protein PA14_05510	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218837.1.S1_at	R	R	pmrna34577	pmrna34577	NA	NA	P13694	Transposase for transposon Tn3926	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218838.1.S1_at	R	R	pmrna34578	pmrna34578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218839.1.S1_at	R	R	pmrna34579	pmrna34579	NA	NA	O06703	HTH-type transcriptional regulator BbuR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218841.1.S1_at	R	R	pmrna34581	pmrna34581	NA	NA	Q1LSE4	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	AT1G48520.1	GLU-ADT subunit B 	LOC_Os11g34210.2	"aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed"	Medtr5g067700.1	"GatB, central region "	NA	NA	NA
PtpAffx.218844.1.S1_at	R	R	pmrna34584	pmrna34584	NA	NA	P0A150	Uncharacterized protein in gidB 3'region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218845.1.S1_at	R	R	pmrna34585	pmrna34585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218846.1.S1_at	R	R	pmrna34586	pmrna34586	NA	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G65880.1	benzoyloxyglucosinolate 1 	LOC_Os09g38350.1	"AMP-binding domain containing protein, expressed"	Medtr3g086630.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.218857.1.S1_at	R	R	pmrna34598	pmrna34598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218858.1.S1_at	R	R	pmrna34599	pmrna34599	NA	NA	Q00513	General secretion pathway protein F	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218859.1.S1_at	R	R	pmrna34601	pmrna34601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218861.1.S1_at	R	R	pmrna34603	pmrna34603	NA	NA	B0RVK3	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218862.1.S1_at	R	R	pmrna34605	pmrna34605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218863.1.S1_at	R	R	pmrna34606	pmrna34606	NA	NA	Q9HXI4	Inositol-1-monophosphatase	AT1G31190.1	myo-inositol monophosphatase like 1 	LOC_Os02g07350.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	NA	NA
PtpAffx.218865.1.S1_at	R	R	pmrna34608	pmrna34608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218866.1.S1_at	R	R	pmrna34609	pmrna34609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218867.1.S1_at	R	R	pmrna34610	pmrna34610	NA	NA	O87883	Probable hydrogen peroxide-inducible genes activator (Fragment)	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218868.1.S1_at	R	R	pmrna34611	pmrna34611	NA	NA	Q1IF69	L-lactate dehydrogenase [cytochrome]	AT4G18360.1	Aldolase-type TIM barrel family protein 	LOC_Os04g53210.1	"hydroxyacid oxidase 1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.218869.1.S1_at	R	R	pmrna34612	pmrna34612	NA	NA	P40882	Uncharacterized protein PA3753	AT1G19580.1	gamma carbonic anhydrase 1 	LOC_Os12g07220.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	NA	NA
PtpAffx.218885.1.S1_at	R	R	pmrna34629	pmrna34629	NA	NA	P26489	Sensor protein fixL	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218886.1.S1_at	R	R	pmrna34630	pmrna34630	NA	NA	P52325	RNA polymerase sigma factor rpoD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218890.1.S1_at	R	R	pmrna34634	pmrna34634	NA	NA	Q12B04	Methionine import ATP-binding protein MetN	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os06g48060.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	NA	NA
PtpAffx.218891.1.S1_at	R	R	pmrna34635	pmrna34635	NA	NA	Q8FWV8	Efflux pump periplasmic linker BepF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218893.1.S1_at	R	R	pmrna34637	pmrna34637	NA	NA	B0UU13	Translation initiation factor IF-2	AT4G11160.1	"Translation initiation factor 2, small GTP-binding protein "	LOC_Os09g34010.1	expressed protein	Medtr5g033550.1	"Elongation factor Tu, domain 2 "	NA	NA	NA
PtpAffx.218894.1.S1_at	R	R	pmrna34638	pmrna34638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218897.1.S1_at	R	R	pmrna34642	pmrna34642	NA	NA	Q21SW7	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218898.1.S1_at	R	R	pmrna34643	pmrna34643	NA	NA	P77730	Uncharacterized HTH-type transcriptional regulator ydcR	AT5G36160.1	Tyrosine transaminase family protein 	NA	NA	Medtr3g097750.1	"Aminotransferase, class I and II; "	NA	NA	NA
PtpAffx.218899.1.S1_at	R	R	pmrna34646	pmrna34646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218900.1.S1_at	R	R	pmrna34650	pmrna34650	NA	NA	Q6JQN1	Acyl-CoA dehydrogenase family member 10	AT3G06810.1	acyl-CoA dehydrogenase-related 	LOC_Os07g47820.2	"acyl-CoA dehydrogenase family member 10, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.218905.1.S1_at	R	R	pmrna34661	pmrna34661	NA	NA	Q1LQJ5	Seryl-tRNA synthetase	AT1G11870.1	Seryl-tRNA synthetase 	LOC_Os11g39670.1	"seryl-tRNA synthetase, putative, expressed"	Medtr1g099460.1	"Seryl-tRNA synthetase, class IIa "	NA	NA	NA
PtpAffx.218907.1.S1_at	R	R	pmrna34663	pmrna34663	NA	NA	P03014	DNA-invertase from lambdoid prophage e14	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218908.1.S1_at	R	R	pmrna34664	pmrna34664	NA	NA	Q1LQJ5	Seryl-tRNA synthetase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218909.1.S1_at	R	R	pmrna34665	pmrna34665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218911.1.S1_at	R	R	pmrna34667	pmrna34667	NA	NA	P54663	Sensor protein degS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218913.1.S1_at	R	R	pmrna34669	pmrna34669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218914.1.S1_at	R	R	pmrna34670	pmrna34670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218917.1.S1_at	R	R	pmrna34674	pmrna34674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218918.1.S1_at	R	R	pmrna34675	pmrna34675	NA	NA	P79081	N-acetyltransferase ats1	AT2G39020.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218919.1.S1_at	R	R	pmrna34676	pmrna34676	NA	NA	P45600	HTH-type transcriptional regulator CysB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218921.1.S1_at	R	R	pmrna34678	pmrna34678	NA	NA	Q10630	Putative regulatory protein ada	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218937.1.S1_at	R	R	pmrna34699	pmrna34699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218939.1.S1_at	R	R	pmrna34702	pmrna34702	NA	NA	O34474	Probable multidrug resistance protein yoeA	AT3G59030.1	MATE efflux family protein 	NA	NA	AC148471_8.1	Multi antimicrobial extrusion protein MatE AC148471.15 16052-17183 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.218940.1.S1_at	R	R	pmrna34703	pmrna34703	NA	NA	O31186	Alcohol dehydrogenase	AT4G39330.1	cinnamyl alcohol dehydrogenase 9 	LOC_Os04g52280.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	NA	NA	NA
PtpAffx.218941.1.S1_at	R	R	pmrna34704	pmrna34704	NA	NA	A9BVZ2	Ribosomal protein S12 methylthiotransferase rimO	AT4G36390.1	Methylthiotransferase 	LOC_Os11g38030.1	"CDK5RAP1, putative, expressed"	Medtr5g021160.1	Elongator protein 3/MiaB/NifB 	NA	NA	NA
PtpAffx.218951.1.S1_at	R	R	pmrna34716	pmrna34716	NA	NA	P37902	Glutamate/aspartate periplasmic-binding protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218952.1.S1_at	R	R	pmrna34717	pmrna34717	NA	NA	P37902	Glutamate/aspartate periplasmic-binding protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218953.1.S1_at	R	R	pmrna34718	pmrna34718	NA	NA	O94562	Uncharacterized aminotransferase C1771.03c	AT3G22200.2	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g10510.2	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	NA	NA
PtpAffx.218954.1.S1_at	R	R	pmrna34719	pmrna34719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218955.1.S1_at	R	R	pmrna34720	pmrna34720	NA	NA	P13082	Streptomycin 3''-kinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218972.1.S1_at	R	R	pmrna34744	pmrna34744	NA	NA	O32207	Uncharacterized protein yvgK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218973.1.S1_at	R	R	pmrna34745	pmrna34745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218974.1.S1_at	R	R	pmrna34746	pmrna34746	NA	NA	C6DJ80	Zinc transport protein zntB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.218975.1.S1_at	R	R	pmrna34747	pmrna34747	NA	NA	Q57725	Probable acetolactate synthase large subunit	AT3G48560.1	chlorsulfuron/imidazolinone resistant 1 	LOC_Os04g32010.1	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr3g150570.1	"Thiamine pyrophosphate enzyme, central region "	NA	NA	NA
PtpAffx.218976.1.S1_at	R	R	pmrna34748	pmrna34748	NA	NA	A9BRV2	Glycerol kinase	AT1G80460.1	Actin-like ATPase superfamily protein 	LOC_Os04g55410.1	"FGGY family of carbohydrate kinases, putative, expressed"	Medtr4g005800.1	Glycerol kinase 	NA	NA	NA
PtpAffx.218999.1.S1_at	R	R	pmrna34779	pmrna34779	NA	NA	O48651	Squalene monooxygenase	AT4G37760.1	squalene epoxidase 3 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	NA	NA	NA
PtpAffx.219007.1.S1_at	R	R	pmrna34792	pmrna34792	NA	NA	Q9KTJ7	Probable D-methionine-binding lipoprotein metQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219008.1.S1_at	R	R	pmrna34793	pmrna34793	NA	NA	Q9HZP6	Electron transfer flavoprotein subunit beta	AT5G43430.1	electron transfer flavoprotein beta 	LOC_Os04g10400.1	"electron transfer flavoprotein subunit beta, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.219009.1.S1_at	R	R	pmrna34794	pmrna34794	NA	NA	Q9HZP7	Electron transfer flavoprotein subunit alpha	AT1G50940.1	electron transfer flavoprotein alpha 	LOC_Os03g61920.1	"electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g110780.1	"Electron transfer flavoprotein, alpha subunit; ; "	NA	NA	NA
PtpAffx.219010.1.S1_at	R	R	pmrna34795	pmrna34795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219011.1.S1_at	R	R	pmrna34796	pmrna34796	NA	NA	Q8Y0W7	D-amino acid dehydrogenase 1 small subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219015.1.S1_at	R	R	pmrna34804	pmrna34804	NA	NA	P24180	Acriflavine resistance protein E	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219016.1.S1_at	R	R	pmrna34805	pmrna34805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219017.1.S1_at	R	R	pmrna34806	pmrna34806	NA	NA	Q8XBS3	Transcriptional regulatory protein qseB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219018.1.S1_at	R	R	pmrna34808	pmrna34808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219019.1.S1_at	R	R	pmrna34809	pmrna34809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219020.1.S1_at	R	R	pmrna34810	pmrna34810	NA	NA	Q479B1	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219028.1.S1_at	R	R	pmrna34820	pmrna34820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219029.1.S1_at	R	R	pmrna34821	pmrna34821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219030.1.S1_at	R	R	pmrna34822	pmrna34822	NA	NA	Q5PLI4	Cellulose synthesis regulatory protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219031.1.S1_at	R	R	pmrna34823	pmrna34823	NA	NA	P96675	Uncharacterized MFS-type transporter ydeR	AT1G49980.1	DNA/RNA polymerases superfamily protein 	NA	NA	Medtr5g005380.1	UMUC-like DNA-repair protein 	NA	NA	NA
PtpAffx.219038.1.S1_at	R	R	pmrna34831	pmrna34831	NA	NA	Q9MYW6	Xanthine dehydrogenase/oxidase	AT4G34900.1	xanthine dehydrogenase  2 	LOC_Os03g31550.2	"aldehyde oxidase, putative, expressed"	Medtr2g117560.1	"2Fe-2S ferredoxin, iron-sulfur binding site; Xanthine dehydrogenase, small subunit; Carbon-monoxide dehydrogenase, large subunit "	NA	NA	NA
PtpAffx.219039.1.S1_at	R	R	pmrna34832	pmrna34832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219040.1.S1_at	R	R	pmrna34833	pmrna34833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219042.1.S1_at	R	R	pmrna34837	pmrna34837	NA	NA	P94575	Probable allantoin permease	AT5G03555.1	"permease, cytosine/purines, uracil, thiamine, allantoin family protein "	LOC_Os02g44680.1	"allantoin permease, putative, expressed"	Medtr1g074200.1	"Permease for cytosine/purines, uracil, thiamine, allantoin "	NA	NA	NA
PtpAffx.219043.1.S1_at	R	R	pmrna34838	pmrna34838	NA	NA	Q9I676	D-hydantoinase/dihydropyrimidinase	AT5G12200.1	pyrimidine 2 	LOC_Os01g59340.3	"dihydropyrimidinase, putative, expressed"	Medtr5g096380.1	"Metallo-dependent hydrolase, composite "	NA	NA	NA
PtpAffx.219052.1.S1_at	R	R	pmrna34850	pmrna34850	NA	NA	P0AGD7	Signal recognition particle protein	AT5G03940.1	chloroplast signal recognition particle 54 kDa subunit 	LOC_Os11g05556.2	"signal recognition particle 54 kDa protein, putative, expressed"	Medtr7g127650.1	"GTP-binding signal recognition particle SRP54, G-domain "	NA	NA	NA
PtpAffx.219053.1.S1_at	R	R	pmrna34851	pmrna34851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219054.1.S1_at	R	R	pmrna34852	pmrna34852	NA	NA	P33639	Sensor protein pilS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219056.1.S1_at	R	R	pmrna34856	pmrna34856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.21906.1.S1_at	R	R	DN485723	DN485723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219065.1.S1_at	R	R	pmrna34869	pmrna34869	NA	NA	P44590	Protein-export membrane protein secF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219066.1.S1_at	R	R	pmrna34870	pmrna34870	NA	NA	P43862	Protein smf	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219075.1.S1_at	R	R	pmrna34882	pmrna34882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219076.1.S1_at	R	R	pmrna34883	pmrna34883	NA	NA	P24484	Lipase 2	AT5G06570.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g57640.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr8g150910.1	"Probable gibberellin receptor GID1L2, related "	NA	NA	NA
PtpAffx.219099.1.S1_at	R	R	pmrna34918	pmrna34918	NA	NA	A1JRR3	Glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219100.1.S1_at	R	R	pmrna34919	pmrna34919	NA	NA	B2RYW9	Fumarylacetoacetate hydrolase domain-containing protein 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219101.1.S1_at	R	R	pmrna34920	pmrna34920	NA	NA	Q58374	Uncharacterized protein MJ0964	AT5G37830.1	oxoprolinase 1 	LOC_Os01g73514.1	"5-oxoprolinase, putative, expressed"	Medtr4g121000.1	"Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal "	NA	NA	NA
PtpAffx.219109.1.S1_at	R	R	pmrna34931	pmrna34931	NA	NA	P0AER5	Glutamate/aspartate transport system permease protein gltK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219110.1.S1_at	R	R	pmrna34932	pmrna34932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219111.1.S1_at	R	R	pmrna34933	pmrna34933	NA	NA	P39376	Uncharacterized HTH-type transcriptional regulator yjiE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219121.1.S1_at	R	R	pmrna34944	pmrna34944	NA	NA	Q5KYR3	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219122.1.S1_at	R	R	pmrna34945	pmrna34945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219123.1.S1_at	R	R	pmrna34946	pmrna34946	NA	NA	Q3MIE0	"Enoyl-CoA hydratase domain-containing protein 3, mitochondrial"	AT5G61060.2	histone deacetylase 5 	LOC_Os12g08220.1	"histone deacetylase, putative, expressed"	Medtr2g105140.1	Histone deacetylase superfamily 	NA	NA	NA
PtpAffx.219124.1.S1_at	R	R	pmrna34947	pmrna34947	NA	NA	P77338	Potassium efflux system KefA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219125.1.S1_at	R	R	pmrna34948	pmrna34948	NA	NA	Q9X1E2	Methyl-accepting chemotaxis protein 4	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219126.1.S1_at	R	R	pmrna34949	pmrna34949	NA	NA	P15078	Carbon starvation protein A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219127.1.S1_at	R	R	pmrna34950	pmrna34950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219128.1.S1_at	R	R	pmrna34951	pmrna34951	NA	NA	P30864	Uncharacterized HTH-type transcriptional regulator yafC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219136.1.S1_at	R	R	pmrna34970	pmrna34970	NA	NA	Q08017	Ferric-pseudobactin M114 receptor pbuA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219137.1.S1_at	R	R	pmrna34971	pmrna34971	NA	NA	NA	NA	AT2G39140.1	pseudouridine synthase family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219139.1.S1_at	R	R	pmrna34973	pmrna34973	NA	NA	Q5KYK0	Methylmalonate semialdehyde dehydrogenase [acylating] 3	AT2G14170.3	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.2	"aldehyde dehydrogenase, putative, expressed"	Medtr2g009860.1	Methylmalonate-semialdehyde dehydrogenase; ; ; 	NA	NA	NA
PtpAffx.219140.1.S1_at	R	R	pmrna34974	pmrna34974	NA	NA	P39045	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219143.1.S1_at	R	R	pmrna34978	pmrna34978	scaffold_1228:4758-6253(-) (9)	NA	Q38924	Fe(3+)-Zn(2+) purple acid phosphatase 12	AT2G27190.1	purple acid phosphatase 12 	LOC_Os01g56880.2	"purple acid phosphatase precursor, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	NA	NA
PtpAffx.219146.1.S1_at	R	R	pmrna34983	pmrna34983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219147.1.S1_at	R	R	pmrna34984	pmrna34984	NA	NA	O06702	UPF0065 protein BB4329	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219148.1.S1_at	R	R	pmrna34985	pmrna34985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219149.1.S1_at	R	R	pmrna34986	pmrna34986	NA	NA	O07753	Uncharacterized MFS-type transporter Rv1877/MT1926	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219150.1.S1_at	R	R	pmrna34987	pmrna34987	NA	NA	Q05202	Ferrichrome receptor fcuA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219151.1.S1_at	R	R	pmrna34988	pmrna34988	NA	NA	P11461	Ferric anguibactin receptor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219153.1.S1_at	R	R	pmrna34991	pmrna34991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219154.1.S1_at	R	R	pmrna34992	pmrna34992	NA	NA	P42061	Oligopeptide-binding protein AppA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219155.1.S1_at	R	R	pmrna34993	pmrna34993	NA	NA	P16940	Insertion element IS600 uncharacterized 31 kDa protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219156.1.S1_at	R	R	pmrna34994	pmrna34994	NA	NA	P37462	Alpha-ketoglutarate-dependent dioxygenase AlkB	AT5G01780.2	2-oxoglutarate-dependent dioxygenase family protein 	LOC_Os03g60190.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr4g031500.1	"Alpha-ketoglutarate-dependent dioxygenase alkB, related "	NA	NA	NA
PtpAffx.219166.1.S1_at	R	R	pmrna35009	pmrna35009	NA	NA	O07556	Uncharacterized symporter yhjB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219167.1.S1_at	R	R	pmrna35010	pmrna35010	NA	NA	NA	NA	AT3G55850.2	Amidohydrolase family 	LOC_Os01g72350.1	"amidohydrolase, putative, expressed"	Medtr3g006310.1	"Metallo-dependent hydrolase, composite "	NA	NA	NA
PtpAffx.219177.1.S1_at	R	R	pmrna35021	pmrna35021	NA	NA	P51767	Baseplate assembly protein J	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219181.1.S1_at	R	R	pmrna35031	pmrna35031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219182.1.S1_at	R	R	pmrna35032	pmrna35032	NA	NA	P45277	HTH-type transcriptional regulator zntR homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219183.1.S1_at	R	R	pmrna35033	pmrna35033	NA	NA	P13111	Mercuric resistance operon regulatory protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219184.1.S1_at	R	R	pmrna35034	pmrna35034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219185.1.S1_at	R	R	pmrna35035	pmrna35035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219186.1.S1_at	R	R	pmrna35036	pmrna35036	NA	NA	P77239	Cation efflux system protein CusB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219199.1.S1_at	R	R	pmrna35051	pmrna35051	NA	NA	P11092	Protein CyaE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219200.1.S1_at	R	R	pmrna35052	pmrna35052	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219203.1.S1_at	R	R	pmrna35056	pmrna35056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219220.1.S1_at	R	R	pmrna35077	pmrna35077	NA	NA	NA	NA	NA	NA	LOC_Os08g03180.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	NA	NA	NA
PtpAffx.219221.1.S1_at	R	R	pmrna35078	pmrna35078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219222.1.S1_at	R	R	pmrna35079	pmrna35079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219223.1.S1_at	R	R	pmrna35080	pmrna35080	NA	NA	Q9ZGR8	Uncharacterized protein yubM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219224.1.S1_at	R	R	pmrna35081	pmrna35081	NA	NA	O86028	Methylmalonyl-CoA mutase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219229.1.S1_at	R	R	pmrna35086	pmrna35086	NA	NA	Q9HZ62	Phosphoglycolate phosphatase 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219230.1.S1_at	R	R	pmrna35087	pmrna35087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219231.1.S1_at	R	R	pmrna35088	pmrna35088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219232.1.S1_at	R	R	pmrna35089	pmrna35089	NA	NA	Q9HWA1	TPR repeat-containing protein PA4299	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219233.1.S1_at	R	R	pmrna35090	pmrna35090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219234.1.S1_at	R	R	pmrna35091	pmrna35091	NA	NA	Q6GH61	Nuclease sbcCD subunit D	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219235.1.S1_at	R	R	pmrna35092	pmrna35092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219236.1.S1_at	R	R	pmrna35093	pmrna35093	NA	NA	Q9KUW9	Methionine synthase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219243.1.S1_at	R	R	pmrna35101	pmrna35101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219244.1.S1_at	R	R	pmrna35102	pmrna35102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219255.1.S1_at	R	R	pmrna35120	pmrna35120	NA	NA	Q48468	Nitrate regulatory protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219256.1.S1_at	R	R	pmrna35121	pmrna35121	NA	NA	A1W9P4	Probable O-sialoglycoprotein endopeptidase	AT2G45270.1	glycoprotease 1 	LOC_Os12g29990.1	"O-sialoglycoprotein endopeptidase, putative, expressed"	Medtr4g025830.1	"Peptidase M22, glycoprotease "	NA	NA	NA
PtpAffx.219258.1.S1_at	R	R	pmrna35124	pmrna35124	NA	NA	Q59097	Pyruvate dehydrogenase E1 component	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219259.1.S1_at	R	R	pmrna35125	pmrna35125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219260.1.S1_at	R	R	pmrna35126	pmrna35126	NA	NA	P67662	HTH-type transcriptional activator AaeR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219261.1.S1_at	R	R	pmrna35127	pmrna35127	NA	NA	Q9I163	Pirin-like protein PA2418	AT2G43120.1	RmlC-like cupins superfamily protein 	LOC_Os09g31120.1	"pirin, putative, expressed"	Medtr5g101700.1	"Pirin, N-terminal "	NA	NA	NA
PtpAffx.219266.1.S1_at	R	R	pmrna35134	pmrna35134	scaffold_4:2101328-2101517(+) (10)	NA	NA	NA	AT1G11800.1	endonuclease/exonuclease/phosphatase family protein 	LOC_Os12g22620.1	"endonuclease/Exonuclease/phosphatase family protein, expressed"	Medtr8g146980.1	"Zinc finger, RanBP2-type; Endonuclease/exonuclease/phosphatase "	NA	NA	NA
PtpAffx.219287.1.S1_at	R	R	pmrna35159	pmrna35159	NA	NA	Q1LIQ1	Glutamate 5-kinase	AT2G39800.3	delta1-pyrroline-5-carboxylate synthase 1 	LOC_Os01g62900.1	"amino acid kinase, putative, expressed"	Medtr3g092110.1	Gamma-glutamyl phosphate reductase GPR; Glutamate 5-kinase 	NA	NA	NA
PtpAffx.219288.1.S1_at	R	R	pmrna35160	pmrna35160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219289.1.S1_at	R	R	pmrna35161	pmrna35161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219307.1.S1_a_at	R	R	pmrna35188	pmrna35188	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.219307.1.S1_x_at	R	R	pmrna35188	pmrna35188	NA	NA	O23530	"Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1"	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.219308.1.S1_at	R	R	pmrna35189	pmrna35189	NA	NA	A9C190	Potassium-transporting ATPase A chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219309.1.S1_at	R	R	pmrna35190	pmrna35190	NA	NA	A9HW20	Peptide chain release factor 3	AT1G62750.1	Translation elongation factor EFG/EF2 protein 	LOC_Os04g45490.1	"elongation factor, putative, expressed"	Medtr8g106340.1	"Elongation factor G, III and V "	NA	NA	NA
PtpAffx.219320.1.S1_at	R	R	pmrna35205	pmrna35205	NA	NA	A1B9Q7	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219322.1.S1_at	R	R	pmrna35207	pmrna35207	NA	NA	O05494	Uncharacterized HTH-type transcriptional regulator ydhC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219323.1.S1_at	R	R	pmrna35208	pmrna35208	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	AT4G16800.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os02g43720.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g105120.1	Enoyl-CoA hydratase/isomerase 	NA	NA	NA
PtpAffx.219327.1.S1_at	R	R	pmrna35214	pmrna35214	NA	NA	B6YWH0	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	NA	NA	NA
PtpAffx.219328.1.S1_at	R	R	pmrna35215	pmrna35215	NA	NA	P42329	"Aldehyde dehydrogenase, thermostable"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os01g40870.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g158660.1	"Aldehyde dehydrogenase 2C4, cytosolic, putative "	NA	NA	NA
PtpAffx.219337.1.S1_at	R	R	pmrna35226	pmrna35226	NA	NA	Q9X6U2	D-beta-hydroxybutyrate dehydrogenase	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os12g13930.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.219338.1.S1_at	R	R	pmrna35227	pmrna35227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219339.1.S1_at	R	R	pmrna35228	pmrna35228	NA	NA	O05255	Uncharacterized ABC transporter permease protein yufQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219340.1.S1_at	R	R	pmrna35229	pmrna35229	NA	NA	O32436	Transcriptional activator protein med	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219341.1.S1_at	R	R	pmrna35230	pmrna35230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219342.1.S1_at	R	R	pmrna35231	pmrna35231	NA	NA	Q1LQ98	Methylglyoxal synthase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219354.1.S1_at	R	R	pmrna35251	pmrna35251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219355.1.S1_at	R	R	pmrna35253	pmrna35253	NA	NA	Q1LIF4	Glutamyl-tRNA reductase	AT1G09940.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	NA	NA	NA
PtpAffx.219356.1.S1_at	R	R	pmrna35254	pmrna35254	NA	NA	P73056	Uncharacterized monothiol glutaredoxin ycf64-like	AT3G54900.1	CAX interacting protein 1 	LOC_Os03g63420.1	"OsGrx_S14 - glutaredoxin subgroup II, expressed"	Medtr7g089300.1	Glutaredoxin-related protein; Glutaredoxin active site 	NA	NA	NA
PtpAffx.219357.1.S1_at	R	R	pmrna35255	pmrna35255	NA	NA	Q9JXP4	Probable aromatic acid decarboxylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219358.1.S1_at	R	R	pmrna35256	pmrna35256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219364.1.S1_at	R	R	pmrna35262	pmrna35262	NA	NA	P08394	Exodeoxyribonuclease V beta chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219365.1.S1_at	R	R	pmrna35263	pmrna35263	NA	NA	P07648	Exodeoxyribonuclease V gamma chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219367.1.S1_at	R	R	pmrna35265	pmrna35265	NA	NA	P68536	"Ribosomal protein S12, mitochondrial"	ATMG00980.1	Ribosomal protein S12/S23 family protein 	LOC_Os12g34144.1	"mitochondrial ribosomal protein S12, putative"	Medtr1g005040.1	"Ribosomal protein S12, bacterial and chloroplast form "	NA	NA	NA
PtpAffx.219368.1.S1_at	R	R	pmrna35266	pmrna35266	NA	NA	P36682	Uncharacterized protein yacH	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219369.1.S1_at	R	R	pmrna35267	pmrna35267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219370.1.S1_at	R	R	pmrna35268	pmrna35268	NA	NA	P52090	Poly(3-hydroxyalkanoate) depolymerase C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219378.1.S1_at	R	R	pmrna35291	pmrna35291	NA	NA	P24584	Polysialic acid transport protein kpsM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219379.1.S1_at	R	R	pmrna35292	pmrna35292	NA	NA	Q05013	Capsule polysaccharide modification protein lipA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219382.1.S1_at	R	R	pmrna35295	pmrna35295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219383.1.S1_at	R	R	pmrna35296	pmrna35296	NA	NA	O05218	Putative gamma-glutamyltransferase ywrD	NA	NA	LOC_Os01g05810.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.219384.1.S1_at	R	R	pmrna35297	pmrna35297	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219385.1.S1_at	R	R	pmrna35298	pmrna35298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219386.1.S1_at	R	R	pmrna35299	pmrna35299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219390.1.S1_at	R	R	pmrna35310	pmrna35310	NA	NA	P76536	Uncharacterized protein yfeX	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219391.1.S1_at	R	R	pmrna35311	pmrna35311	NA	NA	P96683	Uncharacterized HTH-type transcriptional regulator ydfF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219392.1.S1_at	R	R	pmrna35312	pmrna35312	NA	NA	A1W3A1	Chaperone protein htpG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219393.1.S1_at	R	R	pmrna35313	pmrna35313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219394.1.S1_at	R	R	pmrna35314	pmrna35314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219395.1.S1_at	R	R	pmrna35315	pmrna35315	NA	NA	P51767	Baseplate assembly protein J	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219396.1.S1_s_at	R	R	pmrna35316	pmrna35316	NA	NA	P51768	Baseplate assembly protein W	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219397.1.S1_at	R	R	pmrna35317	pmrna35317	NA	NA	Q53193	Probable peptide ABC transporter ATP-binding protein y4tR	AT4G01830.1	P-glycoprotein 5 	LOC_Os01g34970.2	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	NA	NA	NA
PtpAffx.219406.1.S1_at	R	R	pmrna35327	pmrna35327	NA	NA	O28881	Probable branched-chain amino acid transport ATP-binding protein LivG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219407.1.S1_at	R	R	pmrna35328	pmrna35328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219408.1.S1_at	R	R	pmrna35329	pmrna35329	NA	NA	P52046	3-hydroxybutyryl-CoA dehydratase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219409.1.S1_at	R	R	pmrna35330	pmrna35330	NA	NA	O54161	Alpha-L-arabinofuranosidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219410.1.S1_at	R	R	pmrna35331	pmrna35331	NA	NA	P37973	Nickel and cobalt resistance protein CnrB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219411.1.S1_at	R	R	pmrna35332	pmrna35332	NA	NA	P37975	Nickel and cobalt resistance protein CnrR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219414.1.S1_at	R	R	pmrna35335	pmrna35335	NA	NA	O34292	Putative thiamine biosynthesis oxidoreductase thiO	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219415.1.S1_at	R	R	pmrna35336	pmrna35336	NA	NA	Q9JXF7	Thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219416.1.S1_at	R	R	pmrna35337	pmrna35337	NA	NA	P31744	General secretion pathway protein F	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219417.1.S1_at	R	R	pmrna35338	pmrna35338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219418.1.S1_at	R	R	pmrna35339	pmrna35339	NA	NA	Q9C5U1	Histidine kinase 3	AT5G35750.1	histidine kinase 2 	LOC_Os01g69920.3	"histidine kinase, putative, expressed"	Medtr4g156220.2	Response regulator receiver; CHASE; Heavy metal sensor kinase 	NA	NA	NA
PtpAffx.219426.1.S1_at	R	R	pmrna35347	pmrna35347	NA	NA	P54998	Dibenzothiophene desulfurization enzyme C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219427.1.S1_at	R	R	pmrna35348	pmrna35348	NA	NA	Q8Z991	D-methionine transport system permease protein metI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219428.1.S1_at	R	R	pmrna35349	pmrna35349	NA	NA	Q8ZH40	D-methionine-binding lipoprotein metQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219429.1.S1_at	R	R	pmrna35350	pmrna35350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219430.1.S1_at	R	R	pmrna35351	pmrna35351	NA	NA	P0ABU4	GTP-dependent nucleic acid-binding protein engD	AT1G56050.1	GTP-binding protein-related 	LOC_Os03g56840.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	NA	NA
PtpAffx.219431.1.S1_at	R	R	pmrna35352	pmrna35352	NA	NA	P75728	"2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase"	AT3G24200.2	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g62260.1	"FAD binding domain containing protein, expressed"	Medtr2g071190.2	Aromatic-ring hydroxylase 	NA	NA	NA
PtpAffx.219432.1.S1_at	R	R	pmrna35353	pmrna35353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219433.1.S1_at	R	R	pmrna35354	pmrna35354	NA	NA	Q52999	Uncharacterized protein R02095	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219434.1.S1_at	R	R	pmrna35355	pmrna35355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219435.1.S1_at	R	R	pmrna35356	pmrna35356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219436.1.S1_at	R	R	pmrna35357	pmrna35357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219437.1.S1_at	R	R	pmrna35358	pmrna35358	NA	NA	P70791	UPF0065 protein in the TAR-I ttuE-ttuC' intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219438.1.S1_at	R	R	pmrna35359	pmrna35359	NA	NA	P58414	Probable cadmium-transporting ATPase	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	NA	NA	NA
PtpAffx.219439.1.S1_at	R	R	pmrna35360	pmrna35360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219448.1.S1_at	R	R	pmrna35369	pmrna35369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219449.1.S1_at	R	R	pmrna35370	pmrna35370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219453.1.S1_at	R	R	pmrna35374	pmrna35374	NA	NA	Q21UZ2	Glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219454.1.S1_at	R	R	pmrna35375	pmrna35375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219455.1.S1_at	R	R	pmrna35376	pmrna35376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219458.1.S1_at	R	R	pmrna35379	pmrna35379	NA	NA	P52992	Dihydrolipoyl dehydrogenase	AT1G48030.2	mitochondrial lipoamide dehydrogenase 1 	LOC_Os01g22520.2	"dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	NA	NA	NA
PtpAffx.219459.1.S1_at	R	R	pmrna35380	pmrna35380	NA	NA	P37279	Cation-transporting ATPase pacS	AT1G63440.1	heavy metal atpase 5 	LOC_Os02g10290.1	"copper-transporting ATPase, putative, expressed"	Medtr8g096560.1	Calcium-binding EF-hand; Heavy metal translocating P-type ATPase 	NA	NA	NA
PtpAffx.219461.1.S1_at	R	R	pmrna35382	pmrna35382	NA	NA	P0A1J5	Flagellar hook-associated protein 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219462.1.S1_at	R	R	pmrna35383	pmrna35383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219463.1.S1_at	R	R	pmrna35384	pmrna35384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219472.1.S1_at	R	R	pmrna35401	pmrna35401	NA	NA	Q47162	Ferrichrysobactin receptor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219473.1.S1_at	R	R	pmrna35402	pmrna35402	NA	NA	Q7W334	Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]	AT3G24090.1	glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases 	LOC_Os12g03720.2	"glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed"	Medtr7g089900.2	"Glucosamine-fructose-6-phosphate aminotransferase, isomerising "	NA	NA	NA
PtpAffx.219475.1.S1_at	R	R	pmrna35404	pmrna35404	NA	NA	O06991	Maltodextrin transport system permease protein mdxG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219476.1.S1_at	R	R	pmrna35405	pmrna35405	NA	NA	Q62GB4	sn-glycerol-3-phosphate import ATP-binding protein UgpC	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os03g46740.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	NA	NA
PtpAffx.219477.1.S1_at	R	R	pmrna35406	pmrna35406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219478.1.S1_at	R	R	pmrna35407	pmrna35407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219479.1.S1_at	R	R	pmrna35408	pmrna35408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219480.1.S1_at	R	R	pmrna35409	pmrna35409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219487.1.S1_at	R	R	pmrna35425	pmrna35425	NA	NA	O34863	UvrABC system protein A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219489.1.S1_at	R	R	pmrna35427	pmrna35427	NA	NA	Q52525	Protein nirH	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219490.1.S1_at	R	R	pmrna35428	pmrna35428	NA	NA	Q52521	Protein nirF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219491.1.S1_at	R	R	pmrna35429	pmrna35429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219492.1.S1_at	R	R	pmrna35430	pmrna35430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219493.1.S1_at	R	R	pmrna35431	pmrna35431	NA	NA	Q7WHW8	Error-prone DNA polymerase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219494.1.S1_at	R	R	pmrna35433	pmrna35433	NA	NA	Q9URX0	Uncharacterized oxidoreductase C922.06	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219495.1.S1_at	R	R	pmrna35434	pmrna35434	NA	NA	P0AEP7	Glyoxylate carboligase	AT3G48560.1	chlorsulfuron/imidazolinone resistant 1 	LOC_Os04g32010.1	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr2g014800.1	"Thiamine pyrophosphate enzyme, central region "	NA	NA	NA
PtpAffx.219496.1.S1_at	R	R	pmrna35435	pmrna35435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219507.1.S1_at	R	R	pmrna35449	pmrna35449	NA	NA	Q8XAZ4	Uncharacterized protein yneF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219508.1.S1_at	R	R	pmrna35450	pmrna35450	NA	NA	O57880	Uncharacterized HTH-type transcriptional regulator PH0140	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219509.1.S1_at	R	R	pmrna35451	pmrna35451	NA	NA	Q4KCM5	Acyl-homoserine lactone acylase pvdQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219512.1.S1_at	R	R	pmrna35455	pmrna35455	NA	NA	Q46WL2	Histidinol dehydrogenase 1	AT5G63890.2	histidinol dehydrogenase 	LOC_Os01g13190.1	"histidinol dehydrogenase, chloroplast precursor, putative, expressed"	Medtr2g130010.1	Histidinol dehydrogenase 	NA	NA	NA
PtpAffx.219513.1.S1_at	R	R	pmrna35456	pmrna35456	NA	NA	A9BX80	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219514.1.S1_at	R	R	pmrna35457	pmrna35457	NA	NA	P50457	4-aminobutyrate aminotransferase	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	NA	NA
PtpAffx.219515.1.S1_at	R	R	pmrna35458	pmrna35458	NA	NA	Q9HRF0	Putative 2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219519.1.S1_at	R	R	pmrna35462	pmrna35462	NA	NA	P16575	Virulence sensor protein BvgS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219520.1.S1_at	R	R	pmrna35463	pmrna35463	NA	NA	P26762	Virulence sensor protein BvgS	AT1G66340.1	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	NA	NA	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	NA	NA	NA
PtpAffx.219521.1.S1_at	R	R	pmrna35464	pmrna35464	NA	NA	P0A0Q7	Protein vdlD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219524.1.S1_at	R	R	pmrna35467	pmrna35467	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219525.1.S1_at	R	R	pmrna35468	pmrna35468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219528.1.S1_at	R	R	pmrna35471	pmrna35471	NA	NA	Q8XWW2	Phosphoenolpyruvate carboxylase	AT1G68750.1	phosphoenolpyruvate carboxylase 4 	LOC_Os01g02050.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	NA	NA	NA
PtpAffx.219529.1.S1_at	R	R	pmrna35472	pmrna35472	NA	NA	B2T1D1	Porphobilinogen deaminase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219530.1.S1_at	R	R	pmrna35473	pmrna35473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219532.1.S1_at	R	R	pmrna35475	pmrna35475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219533.1.S1_at	R	R	pmrna35476	pmrna35476	NA	NA	A1TQI7	Ribonuclease H	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219534.1.S1_at	R	R	pmrna35477	pmrna35477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219535.1.S1_at	R	R	pmrna35478	pmrna35478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219540.1.S1_at	R	R	pmrna35487	pmrna35487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219541.1.S1_at	R	R	pmrna35488	pmrna35488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219542.1.S1_at	R	R	pmrna35489	pmrna35489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219545.1.S1_at	R	R	pmrna35493	pmrna35493	NA	NA	P51066	Isocitrate lyase	AT3G21720.1	isocitrate lyase 	LOC_Os07g34520.3	"isocitrate lyase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.219546.1.S1_at	R	R	pmrna35494	pmrna35494	NA	NA	A9C3D4	Threonyl-tRNA synthetase	AT2G04842.1	"threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative "	LOC_Os02g33500.1	"threonyl-tRNA synthetase, putative, expressed"	Medtr3g106090.1	"Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	NA	NA	NA
PtpAffx.219547.1.S1_at	R	R	pmrna35495	pmrna35495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219548.1.S1_at	R	R	pmrna35496	pmrna35496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219553.1.S1_at	R	R	pmrna35505	pmrna35505	NA	NA	Q55459	HTH-type transcriptional activator CmpR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219554.1.S1_at	R	R	pmrna35506	pmrna35506	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219555.1.S1_at	R	R	pmrna35507	pmrna35507	NA	NA	P11444	Mandelate racemase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219556.1.S1_at	R	R	pmrna35508	pmrna35508	NA	NA	P37645	Uncharacterized protein yhjG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219557.1.S1_at	R	R	pmrna35509	pmrna35509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219558.1.S1_at	R	R	pmrna35510	pmrna35510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219559.1.S1_at	R	R	pmrna35511	pmrna35511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219560.1.S1_at	R	R	pmrna35512	pmrna35512	NA	NA	Q04605	Uncharacterized protein in chlN 3'region (Fragment)	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219561.1.S1_at	R	R	pmrna35513	pmrna35513	NA	NA	Q1LS34	S-adenosylmethionine synthase	AT3G17390.1	S-adenosylmethionine synthetase family protein 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	NA	NA	NA
PtpAffx.219565.1.S1_at	R	R	pmrna35518	pmrna35518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219566.1.S1_at	R	R	pmrna35519	pmrna35519	NA	NA	P48636	LOG family protein PA4923	AT5G06300.1	Putative lysine decarboxylase family protein 	LOC_Os05g51390.1	"uncharacterized protein PA4923, putative, expressed"	AC233683_4.1	Conserved hypothetical protein 730 AC233683.2 27372-22176 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.219567.1.S1_at	R	R	pmrna35520	pmrna35520	NA	NA	P77504	Uncharacterized ABC transporter permease ybbP	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219568.1.S1_at	R	R	pmrna35521	pmrna35521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219569.1.S1_at	R	R	pmrna35522	pmrna35522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219570.1.S1_at	R	R	pmrna35523	pmrna35523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219571.1.S1_at	R	R	pmrna35524	pmrna35524	NA	NA	Q8ZNQ2	Multidrug resistance protein mdtB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219572.1.S1_at	R	R	pmrna35525	pmrna35525	NA	NA	Q668C6	Multidrug resistance protein mdtB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219573.1.S1_at	R	R	pmrna35528	pmrna35528	NA	NA	P77559	Uncharacterized HTH-type transcriptional regulator ynfL	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219574.1.S1_at	R	R	pmrna35529	pmrna35529	NA	NA	P69903	Formyl-coenzyme A transferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219577.1.S1_at	R	R	pmrna35535	pmrna35535	NA	NA	Q14FA8	"NAD(P)H-quinone oxidoreductase chain 4, chloroplastic"	ATCG01050.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os06g46435.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr7g021650.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.219579.1.S1_at	R	R	pmrna35537	pmrna35537	NA	NA	P14779	Bifunctional P-450/NADPH-P450 reductase	AT1G31800.1	"cytochrome P450, family 97, subfamily A, polypeptide 3 "	LOC_Os10g39930.2	"cytochrome P450 97B2, putative, expressed"	Medtr7g089220.1	Cytochrome P450 	NA	NA	NA
PtpAffx.219580.1.S1_at	R	R	pmrna35538	pmrna35538	NA	NA	P08159	6-hydroxy-D-nicotine oxidase	AT1G30710.1	FAD-binding Berberine family protein 	LOC_Os11g30310.1	"reticuline oxidase-like protein precursor, putative"	AC147501_7.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 20889-22593 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.219582.1.S1_at	R	R	pmrna35540	pmrna35540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219583.1.S1_at	R	R	pmrna35541	pmrna35541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219584.1.S1_at	R	R	pmrna35542	pmrna35542	NA	NA	Q89HA2	Dihydroxy-acid dehydratase 3	AT3G23940.2	dehydratase family 	LOC_Os08g44530.1	"dihydroxy-acid dehydratase, putative, expressed"	Medtr2g103180.1	Dihydroxy-acid and 6-phosphogluconate dehydratase 	NA	NA	NA
PtpAffx.219595.1.S1_at	R	R	pmrna35554	pmrna35554	NA	NA	A1WD88	LPS-assembly protein lptD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219596.1.S1_at	R	R	pmrna35555	pmrna35555	NA	NA	Q121Q4	Chaperone surA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219597.1.S1_at	R	R	pmrna35556	pmrna35556	NA	NA	P95582	Response regulator gacA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219598.1.S1_at	R	R	pmrna35557	pmrna35557	NA	NA	P34202	Flagellar biosynthetic protein fliR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219599.1.S1_at	R	R	pmrna35558	pmrna35558	NA	NA	P77526	Uncharacterized GST-like protein yfcG	AT1G02940.1	glutathione S-transferase (class phi) 5 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219600.1.S1_at	R	R	pmrna35559	pmrna35559	NA	NA	P25737	Lysine-specific permease	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219601.1.S1_at	R	R	pmrna35560	pmrna35560	NA	NA	P59737	Aromatic amino acid transport protein AroP	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219603.1.S1_at	R	R	pmrna35562	pmrna35562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219606.1.S1_at	R	R	pmrna35565	pmrna35565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219607.1.S1_at	R	R	pmrna35566	pmrna35566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219608.1.S1_at	R	R	pmrna35567	pmrna35567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219609.1.S1_at	R	R	pmrna35568	pmrna35568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219610.1.S1_at	R	R	pmrna35569	pmrna35569	NA	NA	P79274	"Long-chain specific acyl-CoA dehydrogenase, mitochondrial"	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.2	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	NA	NA	NA
PtpAffx.219611.1.S1_at	R	R	pmrna35570	pmrna35570	NA	NA	Q47LH3	UPF0336 protein Tfu_2666	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219612.1.S1_at	R	R	pmrna35571	pmrna35571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219613.1.S1_at	R	R	pmrna35572	pmrna35572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219614.1.S1_at	R	R	pmrna35573	pmrna35573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219615.1.S1_at	R	R	pmrna35575	pmrna35575	NA	NA	Q07703	Cystathionine beta-lyase	AT3G57050.2	cystathionine beta-lyase 	LOC_Os06g07960.1	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	NA	NA	NA
PtpAffx.219616.1.S1_at	R	R	pmrna35576	pmrna35576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219617.1.S1_at	R	R	pmrna35577	pmrna35577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219618.1.S1_at	R	R	pmrna35579	pmrna35579	NA	NA	P73009	Probable ABC transporter permease protein slr1045	AT1G19800.1	trigalactosyldiacylglycerol 1 	LOC_Os04g46700.2	"ABC family transporter: toluene tolerance, putative, expressed"	Medtr3g012660.1	Protein of unknown function DUF140 	NA	NA	NA
PtpAffx.219619.1.S1_at	R	R	pmrna35580	pmrna35580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219620.1.S1_at	R	R	pmrna35581	pmrna35581	NA	NA	P68208	UPF0337 protein yjbJ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219623.1.S1_at	R	R	pmrna35585	pmrna35585	NA	NA	P0A3Z5	Probable serine protease do-like	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219624.1.S1_at	R	R	pmrna35586	pmrna35586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219625.1.S1_at	R	R	pmrna35587	pmrna35587	NA	NA	P52076	Transcriptional regulatory protein qseB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219627.1.S1_at	R	R	pmrna35589	pmrna35589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219628.1.S1_at	R	R	pmrna35590	pmrna35590	NA	NA	O31186	Alcohol dehydrogenase	AT4G39330.1	cinnamyl alcohol dehydrogenase 9 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032680.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	NA	NA	NA
PtpAffx.219629.1.S1_at	R	R	pmrna35591	pmrna35591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219630.1.S1_at	R	R	pmrna35592	pmrna35592	NA	NA	Q8YJ23	Leu/Ile/Val-binding protein homolog 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219633.1.S1_at	R	R	pmrna35595	pmrna35595	NA	NA	Q06881	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	AC231342_10.1	Biotin-binding site AC231342.3 52802-49143 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.219634.1.S1_at	R	R	pmrna35596	pmrna35596	NA	NA	O52058	Biotin carboxylase	AT5G35360.3	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	NA	NA	NA
PtpAffx.219635.1.S1_at	R	R	pmrna35597	pmrna35597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219636.1.S1_at	R	R	pmrna35598	pmrna35598	NA	NA	P41052	Membrane-bound lytic murein transglycosylase B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219637.1.S1_at	R	R	pmrna35599	pmrna35599	NA	NA	P43811	"Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase"	AT1G54130.1	RELA/SPOT homolog 3 	LOC_Os07g42160.1	"HD domain containing protein, putative, expressed"	Medtr8g025050.2	"Metal-dependent phosphohydrolase, HD subdomain "	NA	NA	NA
PtpAffx.219645.1.S1_at	R	R	pmrna35609	pmrna35609	NA	NA	Q5UQN4	Uncharacterized protein L432	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219646.1.S1_at	R	R	pmrna35610	pmrna35610	NA	NA	P16682	Phosphonates-binding periplasmic protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219647.1.S1_at	R	R	pmrna35611	pmrna35611	NA	NA	Q1LQB5	Phosphonates import ATP-binding protein PhnC 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219648.1.S1_at	R	R	pmrna35612	pmrna35612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219649.1.S1_at	R	R	pmrna35613	pmrna35613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219650.1.S1_at	R	R	pmrna35614	pmrna35614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219651.1.S1_at	R	R	pmrna35615	pmrna35615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219658.1.S1_s_at	R	R	pmrna35625	pmrna35625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219659.1.S1_s_at	R	R	pmrna35626	pmrna35626	NA	NA	P92567	Uncharacterized mitochondrial protein AtMg01410	ATMG01410.1	open reading frame 204 	NA	NA	Medtr1g006580.1	Mitovirus RNA-dependent RNA polymerase 	NA	NA	NA
PtpAffx.219661.1.S1_at	R	R	pmrna35628	pmrna35628	NA	NA	O52256	Flagellar biosynthesis protein flhF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219662.1.S1_at	R	R	pmrna35629	pmrna35629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219663.1.S1_at	R	R	pmrna35630	pmrna35630	NA	NA	P29248	RNA polymerase sigma factor for flagellar operon	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219665.1.S1_s_at	R	R	pmrna35632	pmrna35632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219666.1.S1_at	R	R	pmrna35633	pmrna35633	NA	NA	P23355	PTS system fructose-specific EIIBC component	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219667.1.S1_at	R	R	pmrna35634	pmrna35634	NA	NA	P0AFM2	Glycine betaine-binding periplasmic protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219669.1.S1_at	R	R	pmrna35636	pmrna35636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219671.1.S1_at	R	R	pmrna35638	pmrna35638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219672.1.S1_at	R	R	pmrna35639	pmrna35639	NA	NA	B9MI90	Phosphoglycerate kinase	AT1G79550.2	phosphoglycerate kinase 	LOC_Os02g07260.2	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077490.2	Phosphoglycerate kinase; ; 	NA	NA	NA
PtpAffx.219674.1.S1_at	R	R	pmrna35644	pmrna35644	NA	NA	P44289	Uncharacterized protein HI_1680	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219675.1.S1_at	R	R	pmrna35645	pmrna35645	NA	NA	P26646	Putative quinone oxidoreductase yhdH	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219676.1.S1_at	R	R	pmrna35646	pmrna35646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219677.1.S1_at	R	R	pmrna35647	pmrna35647	NA	NA	P72324	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	NA	NA	NA
PtpAffx.219678.1.S1_at	R	R	pmrna35648	pmrna35648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219679.1.S1_at	R	R	pmrna35649	pmrna35649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219680.1.S1_at	R	R	pmrna35650	pmrna35650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219682.1.S1_at	R	R	pmrna35652	pmrna35652	NA	NA	Q1JPD3	"D-2-hydroxyglutarate dehydrogenase, mitochondrial"	AT4G36400.2	FAD-linked oxidases family protein 	LOC_Os07g08950.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	NA	NA
PtpAffx.219683.1.S1_at	R	R	pmrna35653	pmrna35653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2197.5.A1_at	R	R	CV257046	CV257046	scaffold_20:335458-335531(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g006780.1	hypothetical protein 	NA	NA	NA
PtpAffx.219702.1.S1_at	R	R	pmrna35688	pmrna35688	scaffold_6:11562091-11562306(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g47730.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	NA	NA	NA
PtpAffx.219837.1.S1_at	R	R	pmrna35986	pmrna35986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219838.1.S1_at	R	R	pmrna35987	pmrna35987	NA	NA	Q8X7G2	Gamma-glutamyl-gamma-aminobutyrate hydrolase	AT1G66860.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os01g04620.3	"transposon protein, putative, unclassified, expressed"	Medtr1g140350.1	Peptidase C26 	NA	NA	NA
PtpAffx.219839.1.S1_at	R	R	pmrna35988	pmrna35988	NA	NA	P44446	Putative long-chain-fatty-acid--CoA ligase	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os05g04170.4	"AMP-binding enzyme, putative, expressed"	Medtr7g133290.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.219840.1.S1_at	R	R	pmrna35989	pmrna35989	NA	NA	P0A193	High-affinity branched-chain amino acid transport ATP-binding protein LivG	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os03g46740.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	NA	NA
PtpAffx.219841.1.S1_at	R	R	pmrna35990	pmrna35990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219842.1.S1_at	R	R	pmrna35991	pmrna35991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219843.1.S1_at	R	R	pmrna35992	pmrna35992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219844.1.S1_at	R	R	pmrna35993	pmrna35993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219846.1.S1_at	R	R	pmrna35995	pmrna35995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219847.1.S1_at	R	R	pmrna35996	pmrna35996	NA	NA	Q9JZR5	Uncharacterized protein NMB0928	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219856.1.S1_at	R	R	pmrna36010	pmrna36010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219857.1.S1_at	R	R	pmrna36011	pmrna36011	NA	NA	P95078	Serine/threonine-protein kinase pknK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219858.1.S1_at	R	R	pmrna36012	pmrna36012	NA	NA	A9BM51	Glutamyl-tRNA synthetase	AT5G64050.1	glutamate tRNA synthetase 	LOC_Os02g02860.1	"glutamyl-tRNA synthetase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.219859.1.S1_at	R	R	pmrna36013	pmrna36013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219863.1.S1_at	R	R	pmrna36017	pmrna36017	NA	NA	P29041	General secretion pathway protein D	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219864.1.S1_at	R	R	pmrna36018	pmrna36018	NA	NA	Q56066	Molybdopterin molybdenumtransferase	AT5G20990.1	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) 	LOC_Os04g56620.2	"molybdopterin biosynthesis protein CNX1, putative, expressed"	Medtr5g094600.1	"Bifunctional molybdenum cofactor molybdenum incorporation/glycine receptor, gephyrin "	NA	NA	NA
PtpAffx.219865.1.S1_at	R	R	pmrna36019	pmrna36019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219866.1.S1_at	R	R	pmrna36020	pmrna36020	NA	NA	P13694	Transposase for transposon Tn3926	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219867.1.S1_at	R	R	pmrna36021	pmrna36021	NA	NA	Q1LJ08	Phosphonates import ATP-binding protein PhnC 2	AT5G52860.1	ABC-2 type transporter family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219868.1.S1_at	R	R	pmrna36022	pmrna36022	NA	NA	Q01103	3-oxoadipate CoA-transferase subunit A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219869.1.S1_at	R	R	pmrna36023	pmrna36023	NA	NA	Q9KQH7	3-oxoacyl-[acyl-carrier-protein] reductase	AT3G03980.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os11g25160.3	"tropinone reductase 2, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.219870.1.S1_at	R	R	pmrna36024	pmrna36024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219871.1.S1_at	R	R	pmrna36025	pmrna36025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219878.1.S1_at	R	R	pmrna36034	pmrna36034	NA	NA	P76097	Uncharacterized protein ydcJ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219879.1.S1_at	R	R	pmrna36035	pmrna36035	NA	NA	Q72LL6	2-aminoadipate transaminase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219880.1.S1_at	R	R	pmrna36036	pmrna36036	NA	NA	A9BXL3	60 kDa chaperonin	AT2G28000.1	chaperonin-60alpha 	LOC_Os12g17910.1	"T-complex protein, putative, expressed"	AC233663_8.1	Chaperonin Cpn60 AC233663.2 79149-81923 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.219883.1.S1_at	R	R	pmrna36039	pmrna36039	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219884.1.S1_at	R	R	pmrna36040	pmrna36040	NA	NA	A4WEU6	5-keto-4-deoxy-D-glucarate aldolase	AT4G10750.1	Phosphoenolpyruvate carboxylase family protein 	LOC_Os09g36030.1	"4-hydroxy-2-oxovalerate aldolase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.219885.1.S1_at	R	R	pmrna36041	pmrna36041	NA	NA	P37248	Transposase for insertion sequence element IS1086	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219886.1.S1_at	R	R	pmrna36042	pmrna36042	NA	NA	Q8DIP7	Fumarate hydratase class II	AT2G47510.2	fumarase 1 	LOC_Os03g21950.1	"fumarate hydratase, mitochondrial precursor, putative, expressed"	Medtr1g107740.1	"Fumarate lyase; Fumarate hydratase, class II "	NA	NA	NA
PtpAffx.219887.1.S1_at	R	R	pmrna36043	pmrna36043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219888.1.S1_at	R	R	pmrna36044	pmrna36044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219891.1.S1_at	R	R	pmrna36047	pmrna36047	NA	NA	P16100	Isocitrate dehydrogenase [NADP]	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219892.1.S1_at	R	R	pmrna36049	pmrna36049	NA	NA	Q51700	Nitrite reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219893.1.S1_at	R	R	pmrna36050	pmrna36050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219894.1.S1_at	R	R	pmrna36051	pmrna36051	NA	NA	Q1LI21	DNA-directed RNA polymerase subunit beta'	ATCG00170.1	DNA-directed RNA polymerase family protein 	LOC_Os02g24614.1	"DNA-directed RNA polymerase subunit beta, putative"	Medtr4g042160.1	"RNA polymerase Rpb1, domain 5 "	NA	NA	NA
PtpAffx.219896.1.S1_at	R	R	pmrna36054	pmrna36054	NA	NA	Q6CZV5	Serine hydroxymethyltransferase 2	AT4G13930.1	serine hydroxymethyltransferase 4 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	NA	NA	NA
PtpAffx.219897.1.S1_at	R	R	pmrna36055	pmrna36055	NA	NA	Q82UP3	Acetylornithine aminotransferase	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr4g140630.1	"Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III; "	NA	NA	NA
PtpAffx.219898.1.S1_at	R	R	pmrna36056	pmrna36056	NA	NA	Q53044	Nitrogen regulatory protein P-II	AT4G01900.1	GLNB1 homolog 	LOC_Os05g04220.1	"nitrogen regulatory protein P-II, putative, expressed"	Medtr7g133450.1	Nitrogen regulatory protein P-II; 	NA	NA	NA
PtpAffx.219899.1.S1_at	R	R	pmrna36057	pmrna36057	NA	NA	P69681	Ammonia channel	AT2G38290.1	ammonium transporter 2 	LOC_Os03g62200.1	"ammonium transporter protein, putative, expressed"	Medtr7g140920.1	Rh-like protein/ammonium transporter 	NA	NA	NA
PtpAffx.219900.1.S1_at	R	R	pmrna36058	pmrna36058	NA	NA	P52073	Glycolate oxidase subunit glcE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219903.1.S1_at	R	R	pmrna36066	pmrna36066	NA	NA	P31902	Hydrogenase nickel incorporation protein hypB	NA	NA	NA	NA	AC148471_39.1	"Hydrogenase expression/synthesis, HypA; [NiFe]-hydrogenase/urease maturation factor, Ni(2+)-binding GTPase AC148471.15 79472-81021 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.219904.1.S1_at	R	R	pmrna36067	pmrna36067	NA	NA	P31911	Hydrogenase expression/formation protein hoxQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219905.1.S1_at	R	R	pmrna36068	pmrna36068	NA	NA	C5CKN8	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219906.1.S1_at	R	R	pmrna36069	pmrna36069	NA	NA	O07578	Uncharacterized HTH-type transcriptional regulator yhdI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219907.1.S1_at	R	R	pmrna36070	pmrna36070	NA	NA	P40586	Uncharacterized protein YIR042C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219909.1.S1_at	R	R	pmrna36072	pmrna36072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219910.1.S1_at	R	R	pmrna36073	pmrna36073	NA	NA	P27237	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	NA	NA	NA
PtpAffx.219911.1.S1_at	R	R	pmrna36074	pmrna36074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219913.1.S1_at	R	R	pmrna36078	pmrna36078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219914.1.S1_at	R	R	pmrna36079	pmrna36079	NA	NA	P37995	Ribosomal RNA small subunit methyltransferase E	AT1G50000.1	methyltransferases 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219915.1.S1_at	R	R	pmrna36080	pmrna36080	NA	NA	Q9KUP2	Transketolase 1	AT3G60750.2	Transketolase 	LOC_Os06g04270.1	"transketolase, chloroplast precursor, putative, expressed"	Medtr2g132820.1	Bacterial transketolase 	NA	NA	NA
PtpAffx.219916.1.S1_at	R	R	pmrna36081	pmrna36081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219917.1.S1_at	R	R	pmrna36082	pmrna36082	NA	NA	P76518	Uncharacterized protein yfdE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219918.1.S1_at	R	R	pmrna36083	pmrna36083	NA	NA	Q8XV41	Thiol:disulfide interchange protein DsbD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219919.1.S1_at	R	R	pmrna36084	pmrna36084	NA	NA	Q1LI69	Probable GTP-binding protein engB	AT5G11480.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g60180.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr3g132650.1	Small GTP-binding protein domain 	NA	NA	NA
PtpAffx.219932.1.S1_at	R	R	pmrna36100	pmrna36100	NA	NA	O53871	Putative acyltransferase Rv0859	AT5G47720.5	Thiolase family protein 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	Medtr5g106000.2	Thiolase; 	NA	NA	NA
PtpAffx.219933.1.S1_at	R	R	pmrna36101	pmrna36101	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219935.1.S1_at	R	R	pmrna36104	pmrna36104	NA	NA	P0A0W2	FK506-binding protein	AT4G25340.1	FK506 BINDING PROTEIN 53 	LOC_Os06g45340.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	NA	NA	NA
PtpAffx.219936.1.S1_at	R	R	pmrna36105	pmrna36105	NA	NA	Q1LQ72	Glutaminyl-tRNA synthetase	AT1G25350.2	"glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative "	LOC_Os01g09000.1	"glutaminyl-tRNA synthetase, putative, expressed"	Medtr1g140680.1	"Glutamyl-tRNA synthetase archae/euk cytosolic; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 2; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 1 "	NA	NA	NA
PtpAffx.219940.1.S1_at	R	R	pmrna36111	pmrna36111	NA	NA	Q07251	L-lactate dehydrogenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219941.1.S1_at	R	R	pmrna36112	pmrna36112	NA	NA	Q1QPW6	Acetate kinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219942.1.S1_at	R	R	pmrna36113	pmrna36113	NA	NA	O52248	Toluene efflux pump membrane transporter ttgB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219944.1.S1_at	R	R	pmrna36115	pmrna36115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219945.1.S1_at	R	R	pmrna36116	pmrna36116	NA	NA	Q1LHL9	Carboxylate-amine ligase Rmet_3485	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219946.1.S1_at	R	R	pmrna36117	pmrna36117	NA	NA	P55218	O-succinylhomoserine sulfhydrylase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	NA	NA	NA
PtpAffx.219947.1.S1_at	R	R	pmrna36118	pmrna36118	NA	NA	P0AG17	Amidophosphoribosyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219948.1.S1_at	R	R	pmrna36119	pmrna36119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219949.1.S1_at	R	R	pmrna36120	pmrna36120	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219950.1.S1_at	R	R	pmrna36121	pmrna36121	NA	NA	Q6ETN3	Probable 4-coumarate--CoA ligase 3	AT1G65060.2	4-coumarate:CoA ligase 3 	LOC_Os02g08100.1	"AMP-binding domain containing protein, expressed"	Medtr4g132920.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like 	NA	NA	NA
PtpAffx.219951.1.S1_at	R	R	pmrna36122	pmrna36122	NA	NA	O34214	Gluconate 2-dehydrogenase flavoprotein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.219952.1.S1_at	R	R	pmrna36123	pmrna36123	NA	NA	Q1LKE3	Chaperone protein htpG	AT5G56030.2	heat shock protein 81-2 	LOC_Os08g39140.3	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	NA	NA
PtpAffx.220057.1.S1_x_at	R	R	pmrna36333	pmrna36333	scaffold_1:1857012-1857666(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220153.1.S1_at	R	R	pmrna36507	pmrna36507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220154.1.S1_at	R	R	pmrna36508	pmrna36508	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220155.1.S1_at	R	R	pmrna36509	pmrna36509	NA	NA	Q01856	Uncharacterized HTH-type transcriptional regulator RHOS4_30730	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220156.1.S1_at	R	R	pmrna36510	pmrna36510	NA	NA	P23485	Protein fecR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220157.1.S1_at	R	R	pmrna36511	pmrna36511	NA	NA	Q9Z3Q5	Rhizobactin receptor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220158.1.S1_at	R	R	pmrna36512	pmrna36512	NA	NA	A2SFL0	Dihydroxy-acid dehydratase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220159.1.S1_at	R	R	pmrna36513	pmrna36513	NA	NA	P52670	HTH-type transcriptional regulator ilvR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220160.1.S1_at	R	R	pmrna36514	pmrna36514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220163.1.S1_at	R	R	pmrna36517	pmrna36517	NA	NA	Q56872	"Probable GDP-mannose 4,6-dehydratase"	AT5G66280.1	"GDP-D-mannose 4,6-dehydratase 1 "	LOC_Os06g04620.1	"GDP-mannose 4,6 dehydratase 2, putative, expressed"	Medtr5g021700.1	"NAD-dependent epimerase/dehydratase; Short-chain dehydrogenase/reductase SDR; GDP-mannose 4,6-dehydratase "	NA	NA	NA
PtpAffx.220164.1.S1_at	R	R	pmrna36518	pmrna36518	NA	NA	Q0K572	Cyanate hydratase	NA	NA	LOC_Os10g33270.1	"cyanate hydratase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.220168.1.S1_at	R	R	pmrna36522	pmrna36522	NA	NA	P45245	Uncharacterized NAD(P)H oxidoreductase HI_1544	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220169.1.S1_at	R	R	pmrna36523	pmrna36523	NA	NA	Q9P6I2	Cys-Gly metallodipeptidase dug1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220170.1.S1_at	R	R	pmrna36524	pmrna36524	NA	NA	Q9F868	Sensory transduction protein regX3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220171.1.S1_at	R	R	pmrna36525	pmrna36525	NA	NA	O34849	Uncharacterized membrane protein yerD	AT5G04140.2	glutamate synthase 1 	LOC_Os07g46460.1	"ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.2	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	NA	NA	NA
PtpAffx.220172.1.S1_at	R	R	pmrna36526	pmrna36526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220173.1.S1_at	R	R	pmrna36527	pmrna36527	NA	NA	NA	NA	AT2G23390.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink). "	LOC_Os04g36062.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.220174.1.S1_at	R	R	pmrna36528	pmrna36528	NA	NA	Q57967	Uncharacterized ATP-binding protein MJ0547	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220175.1.S1_at	R	R	pmrna36529	pmrna36529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220176.1.S1_at	R	R	pmrna36530	pmrna36530	NA	NA	Q7D547	Putative conjugal transfer protein Rv3659c/MT3759	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220177.1.S1_at	R	R	pmrna36531	pmrna36531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220181.1.S1_at	R	R	pmrna36536	pmrna36536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220182.1.S1_at	R	R	pmrna36537	pmrna36537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220183.1.S1_at	R	R	pmrna36538	pmrna36538	NA	NA	Q8Y1W6	Phosphoglycerate kinase	AT3G12780.1	phosphoglycerate kinase 1 	LOC_Os05g41640.3	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077490.2	Phosphoglycerate kinase; ; 	NA	NA	NA
PtpAffx.220184.1.S1_at	R	R	pmrna36539	pmrna36539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220185.1.S1_at	R	R	pmrna36540	pmrna36540	NA	NA	P16931	HTH-type transcriptional regulator dgdR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220186.1.S1_at	R	R	pmrna36541	pmrna36541	NA	NA	Q1REC0	Catecholate siderophore receptor fiu	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220188.1.S1_at	R	R	pmrna36544	pmrna36544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220189.1.S1_at	R	R	pmrna36545	pmrna36545	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220190.1.S1_at	R	R	pmrna36546	pmrna36546	NA	NA	Q11156	Sensory transduction protein regX3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220192.1.S1_at	R	R	pmrna36548	pmrna36548	NA	NA	A4GYQ0	DNA-directed RNA polymerase subunit beta	ATCG00190.1	RNA polymerase subunit beta 	LOC_Os04g16820.1	"DNA-directed RNA polymerase subunit beta, putative, expressed"	Medtr4g042440.1	"RNA polymerase Rpb2, domain 2 "	NA	NA	NA
PtpAffx.220196.1.S1_at	R	R	pmrna36553	pmrna36553	NA	NA	P19828	Protein AngR	NA	NA	NA	NA	Medtr4g132920.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like 	NA	NA	NA
PtpAffx.220197.1.S1_at	R	R	pmrna36554	pmrna36554	NA	NA	Q0RHA0	Carboxylate-amine ligase FRAAL4489	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220198.1.S1_at	R	R	pmrna36555	pmrna36555	NA	NA	P21865	Sensor protein kdpD	NA	NA	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr7g132610.2	"Histidine kinase related protein, C-terminal "	NA	NA	NA
PtpAffx.220201.1.S1_at	R	R	pmrna36558	pmrna36558	NA	NA	P71997	Probable sulfate transporter Rv1739c/MT1781	AT3G12520.2	sulfate transporter 4;2 	NA	NA	Medtr7g022760.1	Sulphate transporter 	NA	NA	NA
PtpAffx.220203.1.S1_at	R	R	pmrna36560	pmrna36560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220206.1.S1_at	R	R	pmrna36563	pmrna36563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220207.1.S1_at	R	R	pmrna36564	pmrna36564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220208.1.S1_at	R	R	pmrna36565	pmrna36565	NA	NA	Q661E8	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220209.1.S1_at	R	R	pmrna36566	pmrna36566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220210.1.S1_at	R	R	pmrna36567	pmrna36567	NA	NA	P75908	Probable diguanylate cyclase YcdT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220214.1.S1_at	R	R	pmrna36571	pmrna36571	NA	NA	P21439	Multidrug resistance protein 3	AT3G28860.1	ATP binding cassette subfamily B19 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr3g102650.1	Cyclic peptide transporter 	NA	NA	NA
PtpAffx.220215.1.S1_at	R	R	pmrna36572	pmrna36572	NA	NA	Q9HZ62	Phosphoglycolate phosphatase 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220216.1.S1_at	R	R	pmrna36573	pmrna36573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220217.1.S1_at	R	R	pmrna36574	pmrna36574	NA	NA	P24216	Flagellar hook-associated protein 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220218.1.S1_at	R	R	pmrna36575	pmrna36575	NA	NA	O07020	Lactate utilization protein A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220219.1.S1_at	R	R	pmrna36576	pmrna36576	NA	NA	P19264	Ethanolamine ammonia-lyase heavy chain	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220220.1.S1_at	R	R	pmrna36577	pmrna36577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220222.1.S1_at	R	R	pmrna36579	pmrna36579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220223.1.S1_at	R	R	pmrna36580	pmrna36580	NA	NA	Q04064	Outer membrane porin protein BP0840	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220228.1.S1_at	R	R	pmrna36590	pmrna36590	NA	NA	Q9HXI2	Protein-export membrane protein secF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220229.1.S1_at	R	R	pmrna36591	pmrna36591	NA	NA	P29267	Hydrogenase transcriptional regulatory protein hoxA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220230.1.S1_at	R	R	pmrna36592	pmrna36592	NA	NA	Q6GIX1	Probable cadmium-transporting ATPase	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	NA	NA	NA
PtpAffx.220231.1.S1_at	R	R	pmrna36593	pmrna36593	NA	NA	P45277	HTH-type transcriptional regulator zntR homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220232.1.S1_at	R	R	pmrna36594	pmrna36594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220233.1.S1_at	R	R	pmrna36595	pmrna36595	NA	NA	P37972	Nickel and cobalt resistance protein CnrA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220234.1.S1_at	R	R	pmrna36596	pmrna36596	NA	NA	Q04222	Transposase for insertion sequence element IS1071 in transposon Tn5271	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220235.1.S1_at	R	R	pmrna36597	pmrna36597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220236.1.S1_at	R	R	pmrna36598	pmrna36598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220241.1.S1_at	R	R	pmrna36603	pmrna36603	NA	NA	Q57952	Digeranylgeranylglycerophospholipid reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220242.1.S1_at	R	R	pmrna36604	pmrna36604	NA	NA	P08401	Sensor protein CreC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220243.1.S1_at	R	R	pmrna36605	pmrna36605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220244.1.S1_at	R	R	pmrna36606	pmrna36606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220245.1.S1_at	R	R	pmrna36607	pmrna36607	NA	NA	P48269	Cytochrome c biogenesis protein ccsA	ATCG01040.1	Cytochrome C assembly protein 	LOC_Os06g46434.1	"cytochrome c biogenesis protein ccsA, putative"	Medtr7g021660.1	Cytochrome c assembly protein 	NA	NA	NA
PtpAffx.220246.1.S1_at	R	R	pmrna36608	pmrna36608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220247.1.S1_at	R	R	pmrna36609	pmrna36609	NA	NA	P77559	Uncharacterized HTH-type transcriptional regulator ynfL	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220249.1.S1_at	R	R	pmrna36611	pmrna36611	NA	NA	Q1LIT8	Ribosomal protein L11 methyltransferase	AT5G53920.1	ribosomal protein L11 methyltransferase-related 	LOC_Os05g41800.1	"ribosomal protein L11 methyltransferase-related, putative, expressed"	Medtr8g071230.1	Ribosomal L11 methyltransferase 	NA	NA	NA
PtpAffx.220257.1.S1_at	R	R	pmrna36622	pmrna36622	NA	NA	P94177	Cation efflux system protein CzcA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220258.1.S1_at	R	R	pmrna36623	pmrna36623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220259.1.S1_at	R	R	pmrna36624	pmrna36624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220260.1.S1_at	R	R	pmrna36627	pmrna36627	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220261.1.S1_at	R	R	pmrna36628	pmrna36628	NA	NA	Q1LNJ0	Disulfide bond formation protein B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220262.1.S1_at	R	R	pmrna36629	pmrna36629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220263.1.S1_at	R	R	pmrna36630	pmrna36630	NA	NA	P96963	DNA repair protein radA homolog	AT5G50340.1	ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases 	LOC_Os06g05820.1	"OsLonP2 - Putative Lon protease homologue, expressed"	Medtr8g016200.1	AAA ATPase 	NA	NA	NA
PtpAffx.220268.1.S1_at	R	R	pmrna36636	pmrna36636	NA	NA	P42508	Photosynthetic apparatus regulatory protein regA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220269.1.S1_at	R	R	pmrna36637	pmrna36637	NA	NA	A1TU04	Protoheme IX farnesyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220270.1.S1_at	R	R	pmrna36638	pmrna36638	NA	NA	A1TU04	Protoheme IX farnesyltransferase	AT2G44520.1	cytochrome c oxidase 10 	LOC_Os01g34390.1	"prenyltransferase, putative, expressed"	Medtr1g146440.1	UbiA prenyltransferase 	NA	NA	NA
PtpAffx.220271.1.S1_at	R	R	pmrna36639	pmrna36639	NA	NA	P50487	Putative purine permease CPE0397	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220272.1.S1_at	R	R	pmrna36640	pmrna36640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220273.1.S1_at	R	R	pmrna36641	pmrna36641	NA	NA	Q54IM8	"Isobutyryl-CoA dehydrogenase, mitochondrial"	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.2	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.2	"Acyl-CoA dehydrogenase, N-terminal; "	NA	NA	NA
PtpAffx.220274.1.S1_at	R	R	pmrna36642	pmrna36642	NA	NA	P16100	Isocitrate dehydrogenase [NADP]	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220278.1.S1_at	R	R	pmrna36648	pmrna36648	NA	NA	P52684	Malonate utilization transcriptional regulator	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220279.1.S1_at	R	R	pmrna36649	pmrna36649	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220280.1.S1_at	R	R	pmrna36650	pmrna36650	NA	NA	Q9KTF4	RlpA-like lipoprotein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220281.1.S1_at	R	R	pmrna36651	pmrna36651	NA	NA	P72171	Ornithine utilization regulator	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220282.1.S1_at	R	R	pmrna36652	pmrna36652	NA	NA	Q57306	Probable ABC transporter permease protein HI_0355	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220283.1.S1_at	R	R	pmrna36653	pmrna36653	NA	NA	P02942	Methyl-accepting chemotaxis protein I	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220284.1.S1_at	R	R	pmrna36654	pmrna36654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220285.1.S1_at	R	R	pmrna36655	pmrna36655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220296.1.S1_at	R	R	pmrna36666	pmrna36666	NA	NA	Q6D3B2	Glutathione transport system permease protein gsiD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220297.1.S1_at	R	R	pmrna36667	pmrna36667	NA	NA	Q2S4S2	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT1G08980.1	amidase 1 	LOC_Os04g02780.1	"amidase family protein, putative, expressed"	Medtr1g099370.1	Amidase 	NA	NA	NA
PtpAffx.220298.1.S1_at	R	R	pmrna36668	pmrna36668	NA	NA	P07001	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220299.1.S1_at	R	R	pmrna36669	pmrna36669	NA	NA	P0C188	NAD(P) transhydrogenase subunit beta	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220300.1.S1_at	R	R	pmrna36670	pmrna36670	NA	NA	Q46888	Uncharacterized oxidoreductase ygbJ	AT1G18270.3	ketose-bisphosphate aldolase class-II family protein 	LOC_Os06g14740.1	"NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed"	Medtr6g083360.1	"Ketose-bisphosphate aldolase, class-II; 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal-like; ; "	NA	NA	NA
PtpAffx.220301.1.S1_at	R	R	pmrna36671	pmrna36671	NA	NA	Q2NRF3	tRNA-modifying protein ygfZ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220302.1.S1_at	R	R	pmrna36672	pmrna36672	NA	NA	P21629	High-affinity branched-chain amino acid transport ATP-binding protein BraF	AT2G41700.2	ATP-binding cassette A1 	LOC_Os01g34970.2	"MDR-like ABC transporter, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.220303.1.S1_at	R	R	pmrna36673	pmrna36673	NA	NA	Q55EQ3	Uncharacterized abhydrolase domain-containing protein DDB_G0269086	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220304.1.S1_at	R	R	pmrna36674	pmrna36674	NA	NA	O34598	Guanine deaminase	NA	NA	NA	NA	Medtr2g052780.1	"CMP/dCMP deaminase, zinc-binding "	NA	NA	NA
PtpAffx.220305.1.S1_at	R	R	pmrna36675	pmrna36675	NA	NA	Q9HWR7	Probable sugar efflux transporter	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220306.1.S1_at	R	R	pmrna36676	pmrna36676	NA	NA	Q47945	Alcohol dehydrogenase cytochrome c subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220307.1.S1_at	R	R	pmrna36677	pmrna36677	NA	NA	Q1LNH3	Succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220318.1.S1_at	R	R	pmrna36689	pmrna36689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220319.1.S1_at	R	R	pmrna36690	pmrna36690	NA	NA	P18945	Cytochrome c oxidase subunit 3	ATMG00730.1	cytochrome c oxidase subunit 3 	NA	NA	Medtr1g005240.1	"Cytochrome c oxidase, subunit III; H+-transporting two-sector ATPase, A subunit "	NA	NA	NA
PtpAffx.220320.1.S1_at	R	R	pmrna36691	pmrna36691	NA	NA	Q8XZ83	Carbamoyl-phosphate synthase large chain	AT1G29900.1	carbamoyl phosphate synthetase B 	LOC_Os01g38970.1	"carbamoyl-phosphate synthase large chain, putative, expressed"	Medtr2g111290.1	"Carbamoyl-phosphate synthase, large subunit, glutamine-dependent; MGS-like; "	NA	NA	NA
PtpAffx.220321.1.S1_at	R	R	pmrna36692	pmrna36692	NA	NA	A1WH11	Transcription elongation factor greA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220322.1.S1_at	R	R	pmrna36693	pmrna36693	NA	NA	Q7D9K0	Transcriptional regulatory protein tcrA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220323.1.S1_at	R	R	pmrna36694	pmrna36694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220324.1.S1_at	R	R	pmrna36695	pmrna36695	NA	NA	A9BUC8	Urease accessory protein ureD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220325.1.S1_at	R	R	pmrna36696	pmrna36696	NA	NA	A9BUC7	Urease subunit gamma	AT1G67550.1	urease 	NA	NA	Medtr3g103500.1	"Urease, beta subunit; TonB box, N-terminal; Urease alpha-subunit, N-terminal "	NA	NA	NA
PtpAffx.220326.1.S1_at	R	R	pmrna36697	pmrna36697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220327.1.S1_at	R	R	pmrna36698	pmrna36698	NA	NA	NA	NA	AT1G01770.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). 	LOC_Os07g27350.1	"atuA, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.220328.1.S1_at	R	R	pmrna36699	pmrna36699	NA	NA	P08201	Nitrite reductase [NAD(P)H] large subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220329.1.S1_at	R	R	pmrna36703	pmrna36703	NA	NA	P96668	Uncharacterized transporter ydeK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220330.1.S1_at	R	R	pmrna36704	pmrna36704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220331.1.S1_at	R	R	pmrna36705	pmrna36705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220332.1.S1_at	R	R	pmrna36706	pmrna36706	NA	NA	P17552	Protein ChrB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220333.1.S1_at	R	R	pmrna36707	pmrna36707	NA	NA	Q4K779	Chromosome initiation inhibitor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220334.1.S1_at	R	R	pmrna36708	pmrna36708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220335.1.S1_at	R	R	pmrna36709	pmrna36709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220336.1.S1_at	R	R	pmrna36710	pmrna36710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220337.1.S1_at	R	R	pmrna36711	pmrna36711	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220338.1.S1_at	R	R	pmrna36712	pmrna36712	NA	NA	P14376	Sensor kinase protein RcsC	AT5G10720.1	histidine kinase 5 	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	NA	NA	NA
PtpAffx.220339.1.S1_at	R	R	pmrna36713	pmrna36713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220340.1.S1_at	R	R	pmrna36714	pmrna36714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220341.1.S1_at	R	R	pmrna36715	pmrna36715	NA	NA	Q9I310	Uncharacterized signaling protein PA1727	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220342.1.S1_at	R	R	pmrna36716	pmrna36716	NA	NA	Q97D80	Dihydrodipicolinate synthase 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220351.1.S1_at	R	R	pmrna36729	pmrna36729	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220352.1.S1_at	R	R	pmrna36730	pmrna36730	NA	NA	O07007	HTH-type transcriptional regulator lutR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220353.1.S1_at	R	R	pmrna36731	pmrna36731	NA	NA	O34299	Uncharacterized protein in TAR-II ttuC' 3'region (Fragment)	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220354.1.S1_at	R	R	pmrna36732	pmrna36732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220356.1.S1_at	R	R	pmrna36734	pmrna36734	NA	NA	Q8Y3C8	Tyrosine recombinase xerC 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220357.1.S1_at	R	R	pmrna36735	pmrna36735	NA	NA	Q9PL93	Ribonucleoside-diphosphate reductase subunit alpha	AT2G21790.1	ribonucleotide reductase 1 	LOC_Os06g07210.1	"ribonucleoside-diphosphate reductase large subunit, putative, expressed"	Medtr4g141590.1	"Ribonucleotide reductase R1 subunit, N-terminal; "	NA	NA	NA
PtpAffx.220358.1.S1_at	R	R	pmrna36736	pmrna36736	NA	NA	Q9PL92	Ribonucleoside-diphosphate reductase subunit beta	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220359.1.S1_at	R	R	pmrna36737	pmrna36737	NA	NA	P55552	Uncharacterized protein y4lL	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220360.1.S1_at	R	R	pmrna36738	pmrna36738	NA	NA	P45493	Hippurate hydrolase	AT5G56650.1	IAA-leucine resistant (ILR)-like 1 	LOC_Os03g62060.1	"hydrolase, putative, expressed"	Medtr2g121850.1	Peptidase M20 	NA	NA	NA
PtpAffx.220361.1.S1_at	R	R	pmrna36739	pmrna36739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220362.1.S1_at	R	R	pmrna36740	pmrna36740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220367.1.S1_at	R	R	pmrna36746	pmrna36746	NA	NA	Q9ZGR8	Uncharacterized protein yubM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220368.1.S1_at	R	R	pmrna36747	pmrna36747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220369.1.S1_at	R	R	pmrna36748	pmrna36748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220371.1.S1_at	R	R	pmrna36750	pmrna36750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220372.1.S1_at	R	R	pmrna36751	pmrna36751	NA	NA	Q9JZ77	"3,4-dihydroxy-2-butanone 4-phosphate synthase"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os08g37605.2	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr2g009300.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	NA	NA	NA
PtpAffx.220373.1.S1_at	R	R	pmrna36752	pmrna36752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220374.1.S1_at	R	R	pmrna36753	pmrna36753	NA	NA	P21367	Uncharacterized protein ycaC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220375.1.S1_at	R	R	pmrna36754	pmrna36754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220376.1.S1_at	R	R	pmrna36755	pmrna36755	NA	NA	B7NLK8	Ribosomal RNA small subunit methyltransferase B	AT3G13180.1	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein 	NA	NA	Medtr5g103660.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	NA	NA	NA
PtpAffx.220377.1.S1_at	R	R	pmrna36756	pmrna36756	NA	NA	A9BR99	DNA-directed RNA polymerase subunit beta'	ATCG00170.1	DNA-directed RNA polymerase family protein 	NA	NA	Medtr7g143380.1	"DNA-directed RNA polymerase subunit beta'', putative "	NA	NA	NA
PtpAffx.220378.1.S1_at	R	R	pmrna36757	pmrna36757	NA	NA	P84199	Serine/threonine-protein kinase D1044.8	AT3G01090.3	SNF1 kinase homolog 10 	LOC_Os10g04010.1	"STE_MEKK_ste11_MAP3K.23 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr4g092160.2	"Ubiquitin-associated; Tyrosine protein kinase; Kinase-associated, C-terminal; "	NA	NA	NA
PtpAffx.220379.1.S1_at	R	R	pmrna36758	pmrna36758	NA	NA	P52062	Oxygen-independent coproporphyrinogen-III oxidase-like protein yggW	AT5G63290.1	Radical SAM superfamily protein 	LOC_Os12g17070.2	"radical SAM enzyme, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.220380.1.S1_at	R	R	pmrna36759	pmrna36759	NA	NA	P32717	Uncharacterized protein yjcS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220381.1.S1_at	R	R	pmrna36760	pmrna36760	NA	NA	P52686	SDS degradation transcriptional activation protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220382.1.S1_at	R	R	pmrna36761	pmrna36761	NA	NA	Q8FW84	Putative binding protein BRA0576	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220383.1.S1_at	R	R	pmrna36762	pmrna36762	NA	NA	Q1LI17	50S ribosomal protein L1	AT3G63490.1	Ribosomal protein L1p/L10e family 	LOC_Os05g32220.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr4g110000.1	Ribosomal protein L1 	NA	NA	NA
PtpAffx.220384.1.S1_at	R	R	pmrna36763	pmrna36763	NA	NA	Q1LI16	50S ribosomal protein L11	AT1G32990.1	plastid ribosomal protein l11 	LOC_Os03g03020.1	"L11 domain containing ribosomal protein, putative, expressed"	Medtr3g109450.1	Ribosomal protein L11 	NA	NA	NA
PtpAffx.220385.1.S1_at	R	R	pmrna36764	pmrna36764	NA	NA	P65592	Transcription antitermination protein nusG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220386.1.S1_at	R	R	pmrna36765	pmrna36765	NA	NA	Q1LI13	Elongation factor Tu	AT4G02930.1	GTP binding Elongation factor Tu family protein 	LOC_Os03g63410.2	"elongation factor Tu, putative, expressed"	Medtr2g026420.1	Small GTP-binding protein domain 	NA	NA	NA
PtpAffx.220387.1.S1_at	R	R	pmrna36766	pmrna36766	NA	NA	P52002	Multidrug resistance protein mexB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220388.1.S1_at	R	R	pmrna36767	pmrna36767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220389.1.S1_at	R	R	pmrna36768	pmrna36768	NA	NA	P54563	Uncharacterized protein yqjZ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220390.1.S1_at	R	R	pmrna36769	pmrna36769	NA	NA	P12012	Gluconate permease	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220391.1.S1_at	R	R	pmrna36770	pmrna36770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220392.1.S1_at	R	R	pmrna36771	pmrna36771	NA	NA	P0A191	High-affinity branched-chain amino acid transport ATP-binding protein LivF	AT5G06530.3	ABC-2 type transporter family protein 	LOC_Os01g42900.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr1g118320.1	Phosphoenolpyruvate carboxylase; AAA ATPase; 	NA	NA	NA
PtpAffx.220395.1.S1_at	R	R	pmrna36776	pmrna36776	NA	NA	Q58119	Uncharacterized transporter MJ0709	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220396.1.S1_at	R	R	pmrna36777	pmrna36777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220398.1.S1_at	R	R	pmrna36779	pmrna36779	NA	NA	Q9A8Z4	Putative aldolase class 2 protein CC_1201	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220399.1.S1_at	R	R	pmrna36780	pmrna36780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220403.1.S1_at	R	R	pmrna36784	pmrna36784	NA	NA	P09384	Chemotaxis protein CheA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220404.1.S1_at	R	R	pmrna36785	pmrna36785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220405.1.S1_at	R	R	pmrna36786	pmrna36786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220406.1.S1_at	R	R	pmrna36787	pmrna36787	NA	NA	Q9S4W2	Uncharacterized protein yubM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220408.1.S1_at	R	R	pmrna36793	pmrna36793	NA	NA	A3NR15	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL	AT5G26880.2	AGAMOUS-like 26 	LOC_Os08g39600.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr3g030550.1	tRNA/rRNA methyltransferase (SpoU) 	NA	NA	NA
PtpAffx.220409.1.S1_at	R	R	pmrna36794	pmrna36794	NA	NA	Q1LRT6	Protein-export protein secB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220410.1.S1_at	R	R	pmrna36795	pmrna36795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220411.1.S1_at	R	R	pmrna36796	pmrna36796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220412.1.S1_at	R	R	pmrna36797	pmrna36797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220413.1.S1_at	R	R	pmrna36798	pmrna36798	NA	NA	P37032	Aconitate hydratase	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr4g062500.1	"Aconitate hydratase, N-terminal; ; ; ; "	NA	NA	NA
PtpAffx.220414.1.S1_at	R	R	pmrna36799	pmrna36799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220416.1.S1_at	R	R	pmrna36801	pmrna36801	NA	NA	Q57964	Uncharacterized protein MJ0544	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220417.1.S1_at	R	R	pmrna36802	pmrna36802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220418.1.S1_at	R	R	pmrna36803	pmrna36803	NA	NA	P0A178	UPF0065 protein in clcB-clcD intergenic region (Fragment)	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220419.1.S1_at	R	R	pmrna36804	pmrna36804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220422.1.S1_at	R	R	pmrna36810	pmrna36810	NA	NA	Q8XZ47	UPF0761 membrane protein RSc1559	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220423.1.S1_at	R	R	pmrna36811	pmrna36811	NA	NA	O23240	"D-2-hydroxyglutarate dehydrogenase, mitochondrial"	AT4G36400.2	FAD-linked oxidases family protein 	LOC_Os07g08950.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	NA	NA
PtpAffx.220428.1.S1_at	R	R	pmrna36819	pmrna36819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220429.1.S1_at	R	R	pmrna36820	pmrna36820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220430.1.S1_at	R	R	pmrna36821	pmrna36821	NA	NA	P94547	Long-chain-fatty-acid--CoA ligase	AT1G75960.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.220431.1.S1_at	R	R	pmrna36822	pmrna36822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220432.1.S1_at	R	R	pmrna36823	pmrna36823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220433.1.S1_at	R	R	pmrna36824	pmrna36824	NA	NA	Q9ABX9	Uncharacterized signaling protein CC_0091	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220434.1.S1_at	R	R	pmrna36825	pmrna36825	NA	NA	Q9JXI5	"D,D-heptose 1,7-bisphosphate phosphatase"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220435.1.S1_at	R	R	pmrna36826	pmrna36826	NA	NA	Q1LR92	Glycyl-tRNA synthetase alpha subunit	AT3G48110.1	glycine-tRNA ligases 	LOC_Os06g01400.1	"glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.220436.1.S1_at	R	R	pmrna36827	pmrna36827	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220437.1.S1_at	R	R	pmrna36828	pmrna36828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220438.1.S1_at	R	R	pmrna36829	pmrna36829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220439.1.S1_at	R	R	pmrna36830	pmrna36830	NA	NA	P0AEC0	UPF0053 inner membrane protein yoaE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220440.1.S1_at	R	R	pmrna36831	pmrna36831	NA	NA	P37902	Glutamate/aspartate periplasmic-binding protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220441.1.S1_at	R	R	pmrna36832	pmrna36832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220442.1.S1_at	R	R	pmrna36833	pmrna36833	NA	NA	P42534	Putative polyketide hydroxylase	AT1G24340.1	FAD/NAD(P)-binding oxidoreductase family protein 	NA	NA	Medtr3g103450.1	"Monooxygenase, FAD-binding "	NA	NA	NA
PtpAffx.220443.1.S1_at	R	R	pmrna36834	pmrna36834	NA	NA	Q4KC84	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase	NA	NA	NA	NA	AC148471_40.1	DegT/DnrJ/EryC1/StrS aminotransferase; Twin-arginine translocation pathway signal; ; AC148471.15 82410-81088 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.220444.1.S1_at	R	R	pmrna36835	pmrna36835	NA	NA	P39853	Capsular polysaccharide biosynthesis protein CapD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220445.1.S1_at	R	R	pmrna36836	pmrna36836	NA	NA	P52074	Glycolate oxidase iron-sulfur subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220446.1.S1_at	R	R	pmrna36837	pmrna36837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220447.1.S1_at	R	R	pmrna36839	pmrna36839	NA	NA	P34818	HTH-type transcriptional regulator trpI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220448.1.S1_at	R	R	pmrna36840	pmrna36840	NA	NA	Q9FVQ0	Flavin-containing monooxygenase YUCCA10	AT1G48910.1	Flavin-containing monooxygenase family protein 	LOC_Os11g10140.1	"flavin monooxygenase, putative"	Medtr1g009490.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	NA	NA	NA
PtpAffx.220449.1.S1_at	R	R	pmrna36841	pmrna36841	NA	NA	Q51487	Outer membrane protein oprM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220450.1.S1_at	R	R	pmrna36842	pmrna36842	NA	NA	P31224	Acriflavine resistance protein B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220451.1.S1_at	R	R	pmrna36843	pmrna36843	NA	NA	O09174	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220452.1.S1_at	R	R	pmrna36844	pmrna36844	NA	NA	O26884	Uncharacterized protein MTH_793	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220454.1.S1_at	R	R	pmrna36846	pmrna36846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220456.1.S1_at	R	R	pmrna36849	pmrna36849	NA	NA	P37469	Replicative DNA helicase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220457.1.S1_at	R	R	pmrna36850	pmrna36850	NA	NA	P0A1J3	Flagellar basal-body rod protein flgG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220458.1.S1_at	R	R	pmrna36851	pmrna36851	NA	NA	P16323	Flagellar basal-body rod protein flgF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220459.1.S1_at	R	R	pmrna36852	pmrna36852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220460.1.S1_at	R	R	pmrna36853	pmrna36853	NA	NA	P0ABX1	Flagellar basal-body rod protein flgB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220461.1.S1_at	R	R	pmrna36854	pmrna36854	NA	NA	Q1LAN7	Elongation factor G 2	AT1G62750.1	Translation elongation factor EFG/EF2 protein 	LOC_Os04g45490.1	"elongation factor, putative, expressed"	Medtr8g106340.1	"Elongation factor G, III and V "	NA	NA	NA
PtpAffx.220462.1.S1_at	R	R	pmrna36855	pmrna36855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220463.1.S1_at	R	R	pmrna36856	pmrna36856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220464.1.S1_at	R	R	pmrna36857	pmrna36857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220465.1.S1_at	R	R	pmrna36858	pmrna36858	NA	NA	Q04064	Outer membrane porin protein BP0840	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220466.1.S1_at	R	R	pmrna36859	pmrna36859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220467.1.S1_at	R	R	pmrna36860	pmrna36860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220472.1.S1_at	R	R	pmrna36865	pmrna36865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220473.1.S1_at	R	R	pmrna36866	pmrna36866	NA	NA	Q65T53	Sulfite reductase [NADPH] flavoprotein alpha-component	AT4G30210.2	P450 reductase 2 	LOC_Os08g14570.1	"NADPH reductase, putative, expressed"	Medtr8g129070.2	Flavoprotein pyridine nucleotide cytochrome reductase 	NA	NA	NA
PtpAffx.220474.1.S1_at	R	R	pmrna36867	pmrna36867	NA	NA	P15558	Penicillin acylase 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220475.1.S1_at	R	R	pmrna36868	pmrna36868	NA	NA	O52401	Small-conductance mechanosensitive channel	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220476.1.S1_at	R	R	pmrna36869	pmrna36869	NA	NA	O68282	Glucose-6-phosphate 1-dehydrogenase	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os07g22350.1	"glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed"	Medtr7g022440.1	Glucose-6-phosphate dehydrogenase 	NA	NA	NA
PtpAffx.220477.1.S1_at	R	R	pmrna36870	pmrna36870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220478.1.S1_at	R	R	pmrna36871	pmrna36871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220479.1.S1_at	R	R	pmrna36872	pmrna36872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220480.1.S1_at	R	R	pmrna36873	pmrna36873	NA	NA	P45524	Putative esterase yheT	AT5G49950.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g43340.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g122290.1	"AB-hydrolase YheT, putative "	NA	NA	NA
PtpAffx.220484.1.S1_at	R	R	pmrna36877	pmrna36877	NA	NA	P40288	Glucose 1-dehydrogenase	AT2G17845.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.220485.1.S1_at	R	R	pmrna36878	pmrna36878	NA	NA	P54479	Zinc-specific metallo-regulatory protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220486.1.S1_at	R	R	pmrna36879	pmrna36879	NA	NA	A1AW21	Chaperone protein dnaJ	AT1G56300.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g42190.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g138160.1	"Glycoside hydrolase, family 11; Heat shock protein DnaJ, N-terminal "	NA	NA	NA
PtpAffx.220487.1.S1_at	R	R	pmrna36880	pmrna36880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220488.1.S1_at	R	R	pmrna36881	pmrna36881	NA	NA	P77434	Uncharacterized aminotransferase yfdZ	AT1G77670.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os10g34350.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g107550.1	"Aminotransferase, class I and II; "	NA	NA	NA
PtpAffx.220489.1.S1_at	R	R	pmrna36882	pmrna36882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220490.1.S1_at	R	R	pmrna36883	pmrna36883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220491.1.S1_at	R	R	pmrna36884	pmrna36884	NA	NA	Q9I472	"Cob(I)yrinic acid a,c-diamide adenosyltransferase"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220492.1.S1_at	R	R	pmrna36885	pmrna36885	NA	NA	A7MXP0	Vitamin B12-binding protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220493.1.S1_at	R	R	pmrna36886	pmrna36886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220494.1.S1_at	R	R	pmrna36887	pmrna36887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220496.1.S1_at	R	R	pmrna36889	pmrna36889	NA	NA	Q8Y003	Putative ribose/galactose/methyl galactoside import ATP-binding protein	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os05g31910.2	"white-brown complex homolog protein 16, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	NA	NA
PtpAffx.220497.1.S1_at	R	R	pmrna36890	pmrna36890	NA	NA	P44885	Galactoside transport system permease protein mglC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220499.1.S1_at	R	R	pmrna36892	pmrna36892	NA	NA	P77467	Probable enoyl-CoA hydratase paaG	NA	NA	LOC_Os01g70090.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr3g103380.1	Enoyl-CoA hydratase/isomerase 	NA	NA	NA
PtpAffx.220500.1.S1_at	R	R	pmrna36893	pmrna36893	NA	NA	Q9S3U8	Probable tryptophan hydroxylase vioD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220505.1.S1_at	R	R	pmrna36898	pmrna36898	NA	NA	O33611	Inhibition of morphological differentiation protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220506.1.S1_at	R	R	pmrna36899	pmrna36899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220507.1.S1_at	R	R	pmrna36900	pmrna36900	NA	NA	Q1LJ86	3-methyl-2-oxobutanoate hydroxymethyltransferase	AT3G61530.2	Phosphoenolpyruvate carboxylase family protein 	LOC_Os01g12560.1	"3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed"	AC235567_90.1	Ketopantoate hydroxymethyltransferase AC235567.1 345051-342096 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.220508.1.S1_at	R	R	pmrna36903	pmrna36903	NA	NA	P52046	3-hydroxybutyryl-CoA dehydratase	AT5G43280.1	"delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 "	LOC_Os02g43720.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr3g103380.1	Enoyl-CoA hydratase/isomerase 	NA	NA	NA
PtpAffx.220509.1.S1_at	R	R	pmrna36904	pmrna36904	NA	NA	P26047	Signal-transduction and transcriptional-control protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220512.1.S1_at	R	R	pmrna36909	pmrna36909	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220513.1.S1_at	R	R	pmrna36910	pmrna36910	NA	NA	Q55CV9	CaiB/baiF CoA-transferase family protein DDB_G0269880	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220514.1.S1_at	R	R	pmrna36911	pmrna36911	NA	NA	Q46PF7	Flagellar P-ring protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220515.1.S1_at	R	R	pmrna36912	pmrna36912	NA	NA	P71997	Probable sulfate transporter Rv1739c/MT1781	AT4G08620.1	sulphate transporter 1;1 	LOC_Os03g06520.2	"sulfate transporter, putative, expressed"	CU651589_4.1	Sulphate transporter CU651589.4 23367-27023 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.220517.1.S1_at	R	R	pmrna36915	pmrna36915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220518.1.S1_at	R	R	pmrna36916	pmrna36916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220519.1.S1_at	R	R	pmrna36917	pmrna36917	NA	NA	P64746	Uncharacterized monooxygenase Mb0916	AT4G19380.1	Long-chain fatty alcohol dehydrogenase family protein 	LOC_Os02g40840.1	"alcohol oxidase, putative, expressed"	Medtr5g025710.1	Long-chain fatty alcohol dehydrogenase 	NA	NA	NA
PtpAffx.220524.1.S1_at	R	R	pmrna36926	pmrna36926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220525.1.S1_at	R	R	pmrna36927	pmrna36927	NA	NA	P23314	Extracellular protease	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220529.1.S1_at	R	R	pmrna36932	pmrna36932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220530.1.S1_at	R	R	pmrna36933	pmrna36933	NA	NA	A7INB6	Enolase	AT1G74030.1	enolase 1 	LOC_Os09g20820.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	NA	NA	NA
PtpAffx.220531.1.S1_at	R	R	pmrna36935	pmrna36935	NA	NA	Q8K914	Protein hflK	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220532.1.S1_at	R	R	pmrna36936	pmrna36936	NA	NA	P40606	Protein hflC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220533.1.S1_at	R	R	pmrna36937	pmrna36937	NA	NA	A9BMU4	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220535.1.S1_at	R	R	pmrna36939	pmrna36939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220536.1.S1_at	R	R	pmrna36940	pmrna36940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220541.1.S1_at	R	R	pmrna36945	pmrna36945	NA	NA	Q6CX96	"Iron-sulfur clusters transporter ATM1, mitochondrial"	AT4G25450.3	non-intrinsic ABC protein 8 	LOC_Os03g54790.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC229695_27.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 AC229695.5 132649-127780 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.220543.1.S1_at	R	R	pmrna36947	pmrna36947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220547.1.S1_at	R	R	pmrna36951	pmrna36951	NA	NA	Q46RW7	Cytochrome c-type biogenesis protein CcmE	AT3G51790.1	transmembrane protein G1P-related 1 	LOC_Os10g39870.1	"ATG1, putative, expressed"	Medtr4g087270.1	"CcmE/CycJ protein; Nucleic acid-binding, OB-fold, subgroup "	NA	NA	NA
PtpAffx.220548.1.S1_at	R	R	pmrna36952	pmrna36952	NA	NA	Q46476	Thiol:disulfide interchange protein DsbE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220549.1.S1_at	R	R	pmrna36953	pmrna36953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220550.1.S1_at	R	R	pmrna36954	pmrna36954	NA	NA	P52993	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex	AT4G26910.1	Dihydrolipoamide succinyltransferase 	NA	NA	Medtr2g006710.1	"Dihydrolipoamide acetyltransferase, long form "	NA	NA	NA
PtpAffx.220551.1.S1_at	R	R	pmrna36955	pmrna36955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220552.1.S1_at	R	R	pmrna36956	pmrna36956	NA	NA	Q9KTE3	Magnesium and cobalt efflux protein CorC	AT1G55930.1	CBS domain-containing protein / transporter associated domain-containing protein 	LOC_Os03g39640.2	"CBS domain containing protein, expressed"	Medtr5g102230.1	CBS; Transporter-associated region 	NA	NA	NA
PtpAffx.220555.1.S1_at	R	R	pmrna36959	pmrna36959	NA	NA	P74956	Lon protease	NA	NA	NA	NA	AC148471_33.1	"AAA ATPase, central region AC148471.15 63508-57084 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.220556.1.S1_at	R	R	pmrna36960	pmrna36960	NA	NA	Q1LM62	ATP-dependent Clp protease proteolytic subunit	AT5G23140.1	nuclear-encoded CLP protease P7 	LOC_Os02g42290.3	"OsClp3 - Putative Clp protease homologue, expressed"	Medtr4g101010.1	"Peptidase S14, ClpP "	NA	NA	NA
PtpAffx.220557.1.S1_at	R	R	pmrna36961	pmrna36961	NA	NA	Q1LM61	Trigger factor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220558.1.S1_at	R	R	pmrna36962	pmrna36962	NA	NA	Q04747	Surfactin synthase subunit 2	NA	NA	NA	NA	Medtr4g132920.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like 	NA	NA	NA
PtpAffx.220559.1.S1_at	R	R	pmrna36963	pmrna36963	NA	NA	Q70LM5	Linear gramicidin synthase subunit C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220560.1.S1_at	R	R	pmrna36964	pmrna36964	NA	NA	P64612	Uncharacterized protein yhcM	AT4G30490.1	AFG1-like ATPase family protein 	LOC_Os08g16480.2	"ATPase, AFG1 family domain containing protein, expressed"	Medtr1g013700.1	AFG1-like ATPase 	NA	NA	NA
PtpAffx.220561.1.S1_at	R	R	pmrna36965	pmrna36965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220562.1.S1_at	R	R	pmrna36966	pmrna36966	NA	NA	Q11KD0	Cytochrome c oxidase assembly protein CtaG	AT1G02410.1	cytochrome c oxidase assembly protein CtaG / Cox11 family 	LOC_Os03g50940.1	"cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.220565.1.S1_at	R	R	pmrna36970	pmrna36970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220566.1.S1_at	R	R	pmrna36971	pmrna36971	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220567.1.S1_at	R	R	pmrna36972	pmrna36972	NA	NA	Q215E3	1-deoxy-D-xylulose 5-phosphate reductoisomerase	AT5G62790.2	1-deoxy-D-xylulose 5-phosphate reductoisomerase 	LOC_Os01g01710.1	"1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed"	Medtr8g125620.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase; ; 	NA	NA	NA
PtpAffx.220568.1.S1_at	R	R	pmrna36973	pmrna36973	NA	NA	C6DAJ1	Outer membrane protein assembly factor yaeT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220569.1.S1_at	R	R	pmrna36974	pmrna36974	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220570.1.S1_at	R	R	pmrna36975	pmrna36975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220571.1.S1_at	R	R	pmrna36976	pmrna36976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220572.1.S1_at	R	R	pmrna36977	pmrna36977	NA	NA	Q9I3N6	Heme exporter protein B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220573.1.S1_at	R	R	pmrna36978	pmrna36978	NA	NA	Q8XFE5	Thiol:disulfide interchange protein DsbE	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220574.1.S1_at	R	R	pmrna36979	pmrna36979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220575.1.S1_at	R	R	pmrna36980	pmrna36980	NA	NA	A7HWJ0	Cysteinyl-tRNA synthetase	AT2G31170.1	"Cysteinyl-tRNA synthetase, class Ia family protein "	LOC_Os03g04960.5	"cysteinyl-tRNA synthetase, putative, expressed"	Medtr3g137730.1	Rossmann-like alpha/beta/alpha sandwich fold 	NA	NA	NA
PtpAffx.220576.1.S1_at	R	R	pmrna36981	pmrna36981	NA	NA	P70997	Penicillin-binding protein 2D	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220577.1.S1_at	R	R	pmrna36982	pmrna36982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220578.1.S1_at	R	R	pmrna36983	pmrna36983	NA	NA	Q56078	Periplasmic beta-glucosidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220579.1.S1_at	R	R	pmrna36984	pmrna36984	NA	NA	Q8Y1K9	"Bis(5'-nucleosyl)-tetraphosphatase, symmetrical"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220580.1.S1_at	R	R	pmrna36985	pmrna36985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220581.1.S1_at	R	R	pmrna36986	pmrna36986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220582.1.S1_at	R	R	pmrna36987	pmrna36987	NA	NA	P37094	Type IV pilus assembly protein pilF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220583.1.S1_at	R	R	pmrna36988	pmrna36988	NA	NA	Q46X10	Dephospho-CoA kinase	AT2G27490.2	dephospho-CoA kinase family 	LOC_Os01g25880.1	"dephospho-CoA kinase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.220584.1.S1_at	R	R	pmrna36989	pmrna36989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220589.1.S1_at	R	R	pmrna36994	pmrna36994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220590.1.S1_at	R	R	pmrna36995	pmrna36995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220591.1.S1_at	R	R	pmrna36996	pmrna36996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220592.1.S1_at	R	R	pmrna36997	pmrna36997	NA	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr7g143580.1	Galactose mutarotase-like 	NA	NA	NA
PtpAffx.220593.1.S1_at	R	R	pmrna36998	pmrna36998	NA	NA	P18584	Probable serine protease do-like	AT3G27925.1	DegP protease 1 	LOC_Os05g49380.2	"OsDegp9 - Putative Deg protease homologue, expressed"	Medtr6g006560.1	"Peptidase S1 and S6, chymotrypsin/Hap "	NA	NA	NA
PtpAffx.220596.1.S1_at	R	R	pmrna37001	pmrna37001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220597.1.S1_at	R	R	pmrna37002	pmrna37002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220598.1.S1_at	R	R	pmrna37003	pmrna37003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220601.1.S1_at	R	R	pmrna37006	pmrna37006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220602.1.S1_at	R	R	pmrna37007	pmrna37007	NA	NA	P39879	Uncharacterized protein PA2026	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220603.1.S1_at	R	R	pmrna37008	pmrna37008	NA	NA	P0ACR8	Uncharacterized HTH-type transcriptional regulator yfeR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220604.1.S1_at	R	R	pmrna37009	pmrna37009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220605.1.S1_at	R	R	pmrna37010	pmrna37010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220606.1.S1_at	R	R	pmrna37011	pmrna37011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220607.1.S1_at	R	R	pmrna37012	pmrna37012	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220608.1.S1_at	R	R	pmrna37013	pmrna37013	NA	NA	P55037	Ferredoxin-dependent glutamate synthase 1	AT5G53460.3	NADH-dependent glutamate synthase 1 	LOC_Os05g48200.1	"glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	NA	NA	NA
PtpAffx.220609.1.S1_at	R	R	pmrna37014	pmrna37014	NA	NA	Q9LV03	"Glutamate synthase 1 [NADH], chloroplastic"	AT5G53460.3	NADH-dependent glutamate synthase 1 	LOC_Os05g48200.1	"glutamate synthase, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.220610.1.S1_at	R	R	pmrna37015	pmrna37015	NA	NA	P0AD58	Octaprenyl-diphosphate synthase	AT1G78510.2	solanesyl diphosphate synthase 1 	LOC_Os12g17320.1	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	NA	NA	NA
PtpAffx.220611.1.S1_at	R	R	pmrna37016	pmrna37016	NA	NA	P45793	Type IV pilus assembly protein tapC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220612.1.S1_at	R	R	pmrna37018	pmrna37018	NA	NA	P37692	ADP-heptose--LPS heptosyltransferase 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220613.1.S1_at	R	R	pmrna37019	pmrna37019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220616.1.S1_at	R	R	pmrna37022	pmrna37022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220617.1.S1_at	R	R	pmrna37023	pmrna37023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220618.1.S1_at	R	R	pmrna37024	pmrna37024	NA	NA	Q8Y2E1	Ribose-phosphate pyrophosphokinase	AT1G32380.1	phosphoribosyl pyrophosphate (PRPP) synthase 2 	LOC_Os03g01018.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	NA	NA	NA
PtpAffx.220619.1.S1_at	R	R	pmrna37025	pmrna37025	NA	NA	A9BP16	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220620.1.S1_at	R	R	pmrna37026	pmrna37026	NA	NA	P42810	TPR repeat-containing protein PA4667	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220623.1.S1_at	R	R	pmrna37030	pmrna37030	NA	NA	A4GYW6	"NAD(P)H-quinone oxidoreductase chain 4, chloroplastic"	ATCG01050.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os06g46435.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr7g021650.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.220623.1.S1_x_at	R	R	pmrna37030	pmrna37030	NA	NA	A4GYW6	"NAD(P)H-quinone oxidoreductase chain 4, chloroplastic"	ATCG01050.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os06g46435.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr7g021650.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.220625.1.S1_at	R	R	pmrna37035	pmrna37035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220626.1.S1_at	R	R	pmrna37036	pmrna37036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220627.1.S1_at	R	R	pmrna37037	pmrna37037	NA	NA	A0R665	FAD-containing monooxygenase EthA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220628.1.S1_at	R	R	pmrna37038	pmrna37038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220629.1.S1_at	R	R	pmrna37039	pmrna37039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220633.1.S1_at	R	R	pmrna37043	pmrna37043	NA	NA	P22414	Peroxisomal hydratase-dehydrogenase-epimerase	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os12g13930.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.220634.1.S1_at	R	R	pmrna37044	pmrna37044	NA	NA	Q58010	Uncharacterized protein MJ0590	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220635.1.S1_at	R	R	pmrna37045	pmrna37045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220639.1.S1_at	R	R	pmrna37049	pmrna37049	NA	NA	Q9KWV3	Toluene efflux pump outer membrane protein ttgF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220640.1.S1_at	R	R	pmrna37050	pmrna37050	NA	NA	P81549	Probable TonB-dependent receptor BfrD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220641.1.S1_at	R	R	pmrna37051	pmrna37051	NA	NA	A0JN27	General transcription factor IIH subunit 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220642.1.S1_at	R	R	pmrna37052	pmrna37052	NA	NA	P11369	Retrovirus-related Pol polyprotein LINE-1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220643.1.S1_at	R	R	pmrna37053	pmrna37053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220644.1.S1_at	R	R	pmrna37054	pmrna37054	NA	NA	Q96MD7	Uncharacterized protein C9orf85	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220645.1.S1_at	R	R	pmrna37055	pmrna37055	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220645.1.S1_x_at	R	R	pmrna37055	pmrna37055	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220646.1.S1_at	R	R	pmrna37056	pmrna37056	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220647.1.S1_at	R	R	pmrna37057	pmrna37057	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220648.1.S1_at	R	R	pmrna37058	pmrna37058	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220649.1.S1_at	R	R	pmrna37059	pmrna37059	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220649.1.S1_x_at	R	R	pmrna37059	pmrna37059	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220650.1.S1_at	R	R	pmrna37060	pmrna37060	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220651.1.S1_at	R	R	pmrna37061	pmrna37061	NA	NA	Q6B4Z3	Histone demethylase UTY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220653.1.S1_at	R	R	pmrna37063	pmrna37063	NA	NA	Q8N976	Putative uncharacterized protein FLJ38264	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220653.1.S1_x_at	R	R	pmrna37063	pmrna37063	NA	NA	Q8N976	Putative uncharacterized protein FLJ38264	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220654.1.S1_at	R	R	pmrna37064	pmrna37064	NA	NA	Q6ZWE1	Putative uncharacterized protein C3orf66	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220655.1.S1_at	R	R	pmrna37065	pmrna37065	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220656.1.S1_at	R	R	pmrna37066	pmrna37066	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220656.1.S1_x_at	R	R	pmrna37066	pmrna37066	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220657.1.S1_at	R	R	pmrna37067	pmrna37067	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220658.1.S1_at	R	R	pmrna37068	pmrna37068	NA	NA	P06615	Resolvase	NA	NA	NA	NA	Medtr2g113660.1	hypothetical protein 	NA	NA	NA
PtpAffx.220659.1.S1_s_at	R	R	pmrna37069	pmrna37069	NA	NA	P03856	Replication initiation protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220660.1.S1_at	R	R	pmrna37070	pmrna37070	NA	NA	P62556	Protein sopA	NA	NA	NA	NA	AC235679_1.1	Major facilitator superfamily AC235679.1 59-1785 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.220661.1.S1_at	R	R	pmrna37071	pmrna37071	NA	NA	P21130	Levansucrase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220662.1.S1_at	R	R	pmrna37072	pmrna37072	NA	NA	Q6B4Z3	Histone demethylase UTY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220665.1.S1_at	R	R	pmrna37075	pmrna37075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220666.1.S1_at	R	R	pmrna37076	pmrna37076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220667.1.S1_at	R	R	pmrna37077	pmrna37077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220668.1.S1_at	R	R	pmrna37078	pmrna37078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220669.1.S1_at	R	R	pmrna37079	pmrna37079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220670.1.S1_at	R	R	pmrna37080	pmrna37080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220671.1.S1_at	R	R	pmrna37081	pmrna37081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220672.1.S1_at	R	R	pmrna37082	pmrna37082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220674.1.S1_at	R	R	pmrna37084	pmrna37084	NA	NA	P37972	Nickel and cobalt resistance protein CnrA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220675.1.S1_at	R	R	pmrna37085	pmrna37085	NA	NA	Q44585	Nickel-cobalt-cadmium resistance protein nccB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220676.1.S1_at	R	R	pmrna37086	pmrna37086	NA	NA	Q52522	Protein nirD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220677.1.S1_at	R	R	pmrna37087	pmrna37087	NA	NA	Q46817	Putative permease ygfQ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220678.1.S1_at	R	R	pmrna37088	pmrna37088	NA	NA	Q9K1A0	RlpA-like protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220679.1.S1_at	R	R	pmrna37089	pmrna37089	NA	NA	A1K3T2	Phosphoheptose isomerase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220680.1.S1_at	R	R	pmrna37090	pmrna37090	NA	NA	P64596	Uncharacterized protein yraP	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220682.1.S1_at	R	R	pmrna37092	pmrna37092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220683.1.S1_at	R	R	pmrna37093	pmrna37093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220684.1.S1_at	R	R	pmrna37094	pmrna37094	NA	NA	P21629	High-affinity branched-chain amino acid transport ATP-binding protein BraF	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220685.1.S1_at	R	R	pmrna37095	pmrna37095	NA	NA	Q88F17	Aquaporin Z	AT4G19030.1	NOD26-like major intrinsic protein 1 	LOC_Os03g64330.1	"aquaporin protein, putative, expressed"	Medtr2g021460.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.220686.1.S1_at	R	R	pmrna37096	pmrna37096	NA	NA	Q8XZR0	Chaperone protein ClpB	AT2G25140.1	casein lytic proteinase B4 	LOC_Os02g08490.1	"chaperone protein clpB 1, putative, expressed"	Medtr6g014150.1	"AAA ATPase, central region; Clp, N terminal "	NA	NA	NA
PtpAffx.220688.1.S1_at	R	R	pmrna37098	pmrna37098	NA	NA	O34677	Glutamine transport ATP-binding protein GlnQ	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os03g46740.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	NA	NA
PtpAffx.220689.1.S1_at	R	R	pmrna37099	pmrna37099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220690.1.S1_at	R	R	pmrna37100	pmrna37100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220693.1.S1_at	R	R	pmrna37105	pmrna37105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220694.1.S1_at	R	R	pmrna37106	pmrna37106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220695.1.S1_at	R	R	pmrna37107	pmrna37107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220696.1.S1_at	R	R	pmrna37108	pmrna37108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220697.1.S1_at	R	R	pmrna37109	pmrna37109	NA	NA	O34474	Probable multidrug resistance protein yoeA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220698.1.S1_at	R	R	pmrna37110	pmrna37110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220699.1.S1_at	R	R	pmrna37111	pmrna37111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220700.1.S1_at	R	R	pmrna37112	pmrna37112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220701.1.S1_at	R	R	pmrna37114	pmrna37114	NA	NA	P76008	Murein tetrapeptide carboxypeptidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220702.1.S1_at	R	R	pmrna37115	pmrna37115	NA	NA	P76011	UPF0410 protein ymge	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220705.1.S1_at	R	R	pmrna37119	pmrna37119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220706.1.S1_at	R	R	pmrna37120	pmrna37120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220708.1.S1_at	R	R	pmrna37123	pmrna37123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220710.1.S1_at	R	R	pmrna37126	pmrna37126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220711.1.S1_at	R	R	pmrna37127	pmrna37127	NA	NA	P0AAK9	Protein nrfC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220714.1.S1_at	R	R	pmrna37130	pmrna37130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220722.1.S1_at	R	R	pmrna37138	pmrna37138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220723.1.S1_at	R	R	pmrna37139	pmrna37139	NA	NA	A9BNH5	tRNA pseudouridine synthase A	AT1G09800.1	Pseudouridine synthase family protein 	LOC_Os12g09290.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr2g005600.1	tRNA pseudouridine synthase 	NA	NA	NA
PtpAffx.220730.1.S1_at	R	R	pmrna37146	pmrna37146	NA	NA	P10183	HTH-type transcriptional activator nahR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220731.1.S1_at	R	R	pmrna37147	pmrna37147	NA	NA	P76350	Shikimate transporter	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220734.1.S1_at	R	R	pmrna37151	pmrna37151	NA	NA	P43741	DNA polymerase I	AT1G50840.1	polymerase gamma 2 	LOC_Os08g07840.1	"PolI-like DNA polymerase, putative, expressed"	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.220735.1.S1_at	R	R	pmrna37152	pmrna37152	NA	NA	Q08E40	Zinc transporter ZIP12	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220736.1.S1_at	R	R	pmrna37155	pmrna37155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220737.1.S1_at	R	R	pmrna37156	pmrna37156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220747.1.S1_at	R	R	pmrna37168	pmrna37168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220748.1.S1_at	R	R	pmrna37169	pmrna37169	NA	NA	Q6NAM1	Fluoroacetate dehalogenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220749.1.S1_at	R	R	pmrna37170	pmrna37170	NA	NA	Q8ZRJ0	3-isopropylmalate dehydratase large subunit 2	AT4G13430.1	isopropyl malate isomerase large subunit 1 	LOC_Os02g03260.3	"3-isopropylmalate dehydratase large subunit 2, putative, expressed"	Medtr1g065760.1	Cis-homoaconitase; ; ; 	NA	NA	NA
PtpAffx.220750.1.S1_at	R	R	pmrna37171	pmrna37171	NA	NA	P43951	Uncharacterized protein HI_0131	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220753.1.S1_at	R	R	pmrna37175	pmrna37175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220754.1.S1_at	R	R	pmrna37176	pmrna37176	NA	NA	A0RUP3	30S ribosomal protein S27ae	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220755.1.S1_at	R	R	pmrna37177	pmrna37177	NA	NA	C5A233	Signal recognition 54 kDa protein	AT1G48900.2	"Signal recognition particle, SRP54 subunit protein "	LOC_Os01g56600.1	"signal recognition particle 54 kDa protein, putative, expressed"	Medtr4g005670.1	"GTP-binding signal recognition particle SRP54, G-domain "	NA	NA	NA
PtpAffx.220756.1.S1_at	R	R	pmrna37178	pmrna37178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220757.1.S1_at	R	R	pmrna37179	pmrna37179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220758.1.S1_at	R	R	pmrna37180	pmrna37180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220759.1.S1_at	R	R	pmrna37181	pmrna37181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220760.1.S1_at	R	R	pmrna37182	pmrna37182	NA	NA	Q9HYT3	Uncharacterized signaling protein PA3311	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220761.1.S1_at	R	R	pmrna37183	pmrna37183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.220892.1.S1_s_at	R	R	pmrna37361	pmrna37361	NA	NA	P05716	"Ribosomal protein S14, mitochondrial"	AT2G34520.1	mitochondrial ribosomal protein S14 	LOC_Os08g02640.1	"succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed"	Medtr1g006920.1	Ribosomal protein S14; Ribosomal protein L5 	NA	NA	NA
PtpAffx.220966.1.S1_at	R	R	pmrna37472	pmrna37472	NA	NA	Q21T97	Adenosine deaminase	AT4G04880.1	adenosine/AMP deaminase family protein 	LOC_Os07g46630.1	"AMP deaminase, putative, expressed"	Medtr8g146450.1	Adenosine/AMP deaminase 	NA	NA	NA
PtpAffx.220967.1.S1_at	R	R	pmrna37473	pmrna37473	NA	NA	O07513	Protein hit	AT5G48545.1	histidine triad nucleotide-binding 3 	LOC_Os11g18990.1	"histidine triad family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.220968.1.S1_at	R	R	pmrna37474	pmrna37474	NA	NA	P76641	Guanine deaminase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221016.1.S1_at	R	R	pmrna37549	pmrna37549	scaffold_19:3267888-3267975(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221016.1.S1_x_at	R	R	pmrna37549	pmrna37549	scaffold_19:3267888-3267999(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221059.1.S1_at	R	R	pmrna37621	pmrna37621	NA	NA	P42824	DnaJ protein homolog 2	AT3G44110.1	DNAJ homologue 3 	LOC_Os02g43930.1	"chaperone protein dnaJ, putative, expressed"	Medtr8g006170.1	DnaJ central region 	NA	NA	NA
PtpAffx.221146.1.S1_at	R	R	pmrna37783	pmrna37783	NA	NA	O49858	Cytochrome P450 82A3	AT4G31940.1	"cytochrome P450, family 82, subfamily C, polypeptide 4 "	LOC_Os03g55260.1	"cytochrome P450, putative, expressed"	Medtr6g009150.1	Cytochrome P450 	NA	NA	NA
PtpAffx.221237.1.S1_at	R	R	pmrna37972	pmrna37972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221239.1.S1_at	R	R	pmrna37975	pmrna37975	NA	NA	P93318	Uncharacterized mitochondrial protein AtMg00660	ATMG00660.1	hypothetical protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221368.1.S1_at	R	R	pmrna38228	pmrna38228	NA	NA	P76350	Shikimate transporter	AT1G76430.1	phosphate transporter 1;9 	LOC_Os03g04360.1	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	NA	NA	NA
PtpAffx.221369.1.S1_at	R	R	pmrna38229	pmrna38229	NA	NA	Q8BJ64	"Choline dehydrogenase, mitochondrial"	NA	NA	LOC_Os02g45530.1	"HOTHEAD precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.221405.1.S1_at	R	R	pmrna38279	pmrna38279	NA	NA	A4GYR0	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os05g01675.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g169540.1	Photosystem I psaA 	NA	NA	NA
PtpAffx.221411.1.S1_at	R	R	pmrna38286	pmrna38286	NA	NA	P11454	Enterobactin synthase component F	AT5G35930.1	AMP-dependent synthetase and ligase family protein 	LOC_Os06g02160.4	"AMP-binding enzyme family protein, expressed"	Medtr4g132920.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like 	NA	NA	NA
PtpAffx.221444.1.S1_at	R	R	pmrna38339	pmrna38339	NA	NA	Q6B4Z3	Histone demethylase UTY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221445.1.S1_at	R	R	pmrna38340	pmrna38340	NA	NA	Q6B4Z3	Histone demethylase UTY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221446.1.S1_at	R	R	pmrna38341	pmrna38341	NA	NA	Q96MD7	Uncharacterized protein C9orf85	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221446.1.S1_x_at	R	R	pmrna38341	pmrna38341	NA	NA	Q96MD7	Uncharacterized protein C9orf85	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221447.1.S1_at	R	R	pmrna38342	pmrna38342	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221448.1.S1_at	R	R	pmrna38343	pmrna38343	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221449.1.S1_at	R	R	pmrna38344	pmrna38344	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221449.1.S1_x_at	R	R	pmrna38344	pmrna38344	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221450.1.S1_at	R	R	pmrna38345	pmrna38345	NA	NA	Q86U02	Putative uncharacterized protein C14orf165	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221451.1.S1_at	R	R	pmrna38346	pmrna38346	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221452.1.S1_at	R	R	pmrna38347	pmrna38347	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221453.1.S1_at	R	R	pmrna38348	pmrna38348	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221453.1.S1_x_at	R	R	pmrna38348	pmrna38348	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221490.1.S1_at	R	R	pmrna38396	pmrna38396	NA	NA	O65924	Putative leucine-rich repeat receptor-like protein kinase At2g19210	AT4G29990.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44990.1	"light repressible receptor protein kinase, putative, expressed"	Medtr2g121730.1	Protein kinase 	NA	NA	NA
PtpAffx.221502.1.S1_at	R	R	pmrna38415	pmrna38415	scaffold_3:2813873-2814085(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g27080.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.221530.1.S1_at	R	R	pmrna38461	pmrna38461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221530.1.S1_x_at	R	R	pmrna38461	pmrna38461	scaffold_3:5076000-5076144(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221535.1.S1_at	R	R	pmrna38468	pmrna38468	scaffold_1:2988442-2988845(+) (11)//scaffold_1:35007621-35008024(+) (11)//scaffold_373:1871-2274(-) (11)//scaffold_47:114729-115128(+) (10)	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.22158.1.S1_at	R	R	CK095155	CK095155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22161.1.S1_at	R	R	CK105019	CK105019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221632.1.S1_at	R	R	pmrna38610	pmrna38610	NA	NA	Q9HZ00	Pirin-like protein PA3240	AT3G59220.1	pirin 	LOC_Os03g62790.2	"pirin, putative, expressed"	Medtr5g101700.1	"Pirin, N-terminal "	NA	NA	NA
PtpAffx.221633.1.S1_at	R	R	pmrna38611	pmrna38611	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22165.1.S1_at	R	R	CK104966	CK104966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221664.1.S1_at	R	R	pmrna38664	pmrna38664	NA	NA	Q57039	6-phosphogluconolactonase	AT1G13700.1	6-phosphogluconolactonase 1 	LOC_Os08g43370.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	NA	NA	NA
PtpAffx.221665.1.S1_at	R	R	pmrna38665	pmrna38665	NA	NA	P43774	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.221705.1.S1_at	R	R	pmrna38726	pmrna38726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221739.1.S1_at	R	R	pmrna38780	pmrna38780	NA	NA	Q0I1V8	Isoleucyl-tRNA synthetase	AT5G49030.3	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os02g53770.1	"tRNA synthetase class I, putative, expressed"	Medtr4g104390.1	"Aminoacyl-tRNA synthetase, class Ia; "	NA	NA	NA
PtpAffx.221740.1.S1_at	R	R	pmrna38781	pmrna38781	NA	NA	B0UTE7	Shikimate kinase	AT2G21940.5	shikimate kinase 1 	LOC_Os02g51410.1	"shikimate kinase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.221744.1.S1_x_at	R	R	pmrna38787	pmrna38787	NA	NA	P41615	Cytochrome b559 subunit alpha	ATCG00580.1	photosystem II reaction center protein E 	LOC_Os10g21298.1	"cytochrome b559 subunit alpha, putative"	Medtr4g042270.1	Photosystem II protein PsbL; Photosystem II protein cytochrome b559; 	NA	NA	NA
PtpAffx.221777.1.S1_at	R	R	pmrna38828	pmrna38828	NA	NA	Q72LL6	2-aminoadipate transaminase	AT1G77670.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os09g28050.1	"asparate aminotransferase, putative, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	NA	NA	NA
PtpAffx.221778.1.S1_at	R	R	pmrna38829	pmrna38829	NA	NA	P76052	Aminobenzoyl-glutamate utilization protein B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221783.1.S1_at	R	R	pmrna38835	pmrna38835	NA	NA	P44697	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	AT1G22940.1	"thiamin biosynthesis protein, putative "	LOC_Os12g09000.1	"phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed"	Medtr2g006430.1	Thiamine monophosphate synthase; Phosphomethylpyrimidine kinase; 	NA	NA	NA
PtpAffx.221785.1.S1_at	R	R	pmrna38837	pmrna38837	NA	NA	P0A1I1	Thiosulfate reductase electron transport protein phsB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221786.1.S1_at	R	R	pmrna38838	pmrna38838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221789.1.S1_at	R	R	pmrna38842	pmrna38842	NA	NA	A4GYQ8	"30S ribosomal protein S14, chloroplastic"	ATCG00330.1	chloroplast ribosomal protein S14 	LOC_Os10g38238.1	"chloroplast 30S ribosomal protein S14, putative"	Medtr3g043630.1	Ribosomal protein S14 	NA	NA	NA
PtpAffx.221790.1.S1_at	R	R	pmrna38843	pmrna38843	NA	NA	A0A334	Photosystem I P700 chlorophyll a apoprotein A2	ATCG00340.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38234.1	"photosystem I P700 chlorophyll a apoprotein A2, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.221803.1.S1_at	R	R	pmrna38862	pmrna38862	NA	NA	Q9HYT3	Uncharacterized signaling protein PA3311	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221804.1.S1_at	R	R	pmrna38863	pmrna38863	NA	NA	P23484	Probable RNA polymerase sigma factor fecI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221818.1.S1_at	R	R	pmrna38890	pmrna38890	NA	NA	Q0H8X5	NADH-ubiquinone oxidoreductase chain 1	ATMG01275.1	NADH dehydrogenase 1A 	LOC_Os10g21396.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr6g035930.1	"NADH-ubiquinone oxidoreductase, chain 49kDa; Respiratory-chain NADH dehydrogenase, subunit 1 "	NA	NA	NA
PtpAffx.22183.1.S1_at	R	R	CK094612	CK094612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221835.1.S1_at	R	R	pmrna38914	pmrna38914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221836.1.S1_at	R	R	pmrna38915	pmrna38915	NA	NA	P96629	ICEBs1 integrase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22184.1.S1_at	R	R	BI124327	BI124327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221846.1.S1_s_at	R	R	pmrna38930	pmrna38930	NA	NA	P93310	Uncharacterized mitochondrial protein AtMg00550	AT1G66170.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g65600.1	"PHD-finger domain containing protein, putative, expressed"	Medtr5g085540.1	"Calcium-binding EF-hand; Zinc finger, FYVE/PHD-type "	NA	NA	NA
PtpAffx.22185.1.S1_at	R	R	BI124178	BI124178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221851.1.S1_at	R	R	pmrna38940	pmrna38940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221852.1.S1_at	R	R	pmrna38941	pmrna38941	NA	NA	P55180	UDP-glucose 4-epimerase	AT4G23920.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 2 	LOC_Os08g28730.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	NA	NA	NA
PtpAffx.221853.1.S1_at	R	R	pmrna38942	pmrna38942	NA	NA	A9BXA1	Imidazole glycerol phosphate synthase subunit hisF	AT4G26900.1	HIS HF 	LOC_Os03g15120.1	"imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.22186.2.S1_at	R	R	BI124122	BI124122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221862.1.S1_at	R	R	pmrna38955	pmrna38955	scaffold_1:43704710-43705077(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221863.1.S1_at	R	R	pmrna38956	pmrna38956	scaffold_1:43721918-43722151(-) (11)	NA	NA	NA	NA	NA	LOC_Os11g22590.1	"retrotransposon protein, putative, Ty1-copia subclass"	NA	NA	NA	NA	NA
PtpAffx.221874.1.S1_at	R	R	pmrna38974	pmrna38974	NA	NA	P44082	Uncharacterized protein HI_0941	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221884.1.S1_at	R	R	pmrna38988	pmrna38988	NA	NA	P43881	Transcription elongation factor greA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221887.1.S1_at	R	R	pmrna38992	pmrna38992	NA	NA	Q0I1F1	Dihydroxy-acid dehydratase	AT3G23940.2	dehydratase family 	LOC_Os08g44530.1	"dihydroxy-acid dehydratase, putative, expressed"	Medtr2g103180.1	Dihydroxy-acid and 6-phosphogluconate dehydratase 	NA	NA	NA
PtpAffx.221888.1.S1_at	R	R	pmrna38993	pmrna38993	NA	NA	Q57523	Uncharacterized protein HI_0696	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221900.1.S1_at	R	R	pmrna39007	pmrna39007	NA	NA	O34474	Probable multidrug resistance protein yoeA	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os07g09060.2	"aldehyde dehydrogenase, putative, expressed"	Medtr2g009860.1	Methylmalonate-semialdehyde dehydrogenase; ; ; 	NA	NA	NA
PtpAffx.221902.1.S1_at	R	R	pmrna39010	pmrna39010	NA	NA	P44828	Putative exopolyphosphatase	AT1G09195.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Ppx/GppA phosphatase (InterPro:IPR003695). "	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221903.1.S1_at	R	R	pmrna39011	pmrna39011	NA	NA	Q57523	Uncharacterized protein HI_0696	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221906.1.S1_at	R	R	pmrna39018	pmrna39018	NA	NA	P08368	Transcriptional regulatory protein CreB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221907.1.S1_at	R	R	pmrna39019	pmrna39019	NA	NA	P08401	Sensor protein CreC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221908.1.S1_at	R	R	pmrna39021	pmrna39021	NA	NA	B0UWQ8	Adenine phosphoribosyltransferase	AT4G22570.1	adenine phosphoribosyl transferase 3 	LOC_Os12g39860.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	NA	NA	NA
PtpAffx.221909.1.S1_at	R	R	pmrna39022	pmrna39022	NA	NA	P44567	Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221917.1.S1_at	R	R	pmrna39033	pmrna39033	NA	NA	Q66FU6	sn-glycerol-3-phosphate transport system permease protein ugpA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221918.1.S1_at	R	R	pmrna39034	pmrna39034	NA	NA	Q7CPK0	sn-glycerol-3-phosphate-binding periplasmic protein ugpB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221926.1.S1_at	R	R	pmrna39045	pmrna39045	NA	NA	Q59207	Nitrogen fixation protein fixI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221927.1.S1_at	R	R	pmrna39046	pmrna39046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221928.1.S1_at	R	R	pmrna39047	pmrna39047	NA	NA	P96575	Putative acyl--CoA ligase ydaB	AT3G16170.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g086630.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.221929.1.S1_at	R	R	pmrna39048	pmrna39048	NA	NA	P42270	"2-oxo-hepta-3-ene-1,7-dioic acid hydratase"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22193.1.S1_at	R	R	CK104303	CK104303	NA	NA	Q96W54	40S ribosomal protein S22	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os07g10720.2	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	NA	NA	NA
PtpAffx.221930.1.S1_at	R	R	pmrna39049	pmrna39049	NA	NA	Q9LBG2	Levodione reductase	AT2G47130.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g30060.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr6g025640.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.221932.1.S1_at	R	R	pmrna39051	pmrna39051	NA	NA	P44560	Sec-independent protein translocase protein tatC	AT2G01110.1	Sec-independent periplasmic protein translocase 	LOC_Os01g31680.2	"uncharacterized protein sll0194, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.221933.1.S1_at	R	R	pmrna39052	pmrna39052	NA	NA	Q9C102	Putative glutamate synthase [NADPH]	AT5G53460.3	NADH-dependent glutamate synthase 1 	LOC_Os05g48200.1	"glutamate synthase, chloroplast precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.221942.1.S1_x_at	R	R	pmrna39065	pmrna39065	scaffold_5:7820145-7820384(-) (11)	NA	A4GYP0	Maturase K	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.221992.1.S1_at	R	R	pmrna39161	pmrna39161	scaffold_5:9209719-9210051(+) (11)	NA	Q96453	14-3-3-like protein D	AT1G22300.2	general regulatory factor 10 	LOC_Os01g11110.1	"14-3-3 protein, putative, expressed"	Medtr2g092800.1	14-3-3 protein 	NA	NA	NA
PtpAffx.222015.1.S1_at	R	R	pmrna39205	pmrna39205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222023.1.S1_at	R	R	pmrna39215	pmrna39215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222024.1.S1_at	R	R	pmrna39216	pmrna39216	NA	NA	P52076	Transcriptional regulatory protein qseB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222025.1.S1_at	R	R	pmrna39217	pmrna39217	NA	NA	A9BY30	Acetylglutamate kinase	AT3G57560.1	N-acetyl-l-glutamate kinase 	LOC_Os02g44000.1	"amino acid kinase, putative"	Medtr3g135710.1	Acetylglutamate kinase 	NA	NA	NA
PtpAffx.222029.1.S1_at	R	R	pmrna39225	pmrna39225	NA	NA	P0AFQ2	Inner membrane transport permease ybhS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222030.1.S1_at	R	R	pmrna39226	pmrna39226	NA	NA	P0AFQ2	Inner membrane transport permease ybhS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222033.1.S1_at	R	R	pmrna39229	pmrna39229	NA	NA	Q70LM6	Linear gramicidin synthase subunit B	AT5G35930.1	AMP-dependent synthetase and ligase family protein 	LOC_Os06g02160.4	"AMP-binding enzyme family protein, expressed"	Medtr4g132920.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like 	NA	NA	NA
PtpAffx.222034.1.S1_at	R	R	pmrna39230	pmrna39230	NA	NA	Q87AZ9	DNA recombination protein rmuC homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222038.1.S1_at	R	R	pmrna39236	pmrna39236	NA	NA	Q54SP4	Hybrid signal transduction histidine kinase D	AT5G10720.1	histidine kinase 5 	LOC_Os05g06320.3	"ethylene receptor, putative, expressed"	Medtr7g132610.1	"Histidine kinase related protein, C-terminal; Bacteriophytochrome "	NA	NA	NA
PtpAffx.222039.1.S1_at	R	R	pmrna39237	pmrna39237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22205.1.S1_at	R	R	CK094149	CK094149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222056.1.S1_at	R	R	pmrna39260	pmrna39260	NA	NA	P58379	Heavy metal-dependent transcription regulator 2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222057.1.S1_at	R	R	pmrna39261	pmrna39261	NA	NA	Q60048	Probable cadmium-transporting ATPase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222058.1.S1_at	R	R	pmrna39263	pmrna39263	NA	NA	P63883	N-acetylmuramoyl-L-alanine amidase AmiC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222059.1.S1_at	R	R	pmrna39264	pmrna39264	NA	NA	P39288	Putative electron transport protein yjeS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222060.1.S1_at	R	R	pmrna39265	pmrna39265	NA	NA	P13081	Bleomycin resistance protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222061.1.S1_at	R	R	pmrna39266	pmrna39266	NA	NA	P16836	Uncharacterized protein UL126	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222066.1.S1_s_at	R	R	pmrna39272	pmrna39272	NA	NA	P62556	Protein sopA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222069.1.S1_at	R	R	pmrna39275	pmrna39275	NA	NA	Q01854	Protein rdxA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222070.1.S1_at	R	R	pmrna39276	pmrna39276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222073.1.S1_at	R	R	pmrna39279	pmrna39279	NA	NA	Q9HZQ2	Protein CobW	AT1G80480.1	plastid transcriptionally active 17 	LOC_Os02g55630.1	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	NA	NA	NA
PtpAffx.222080.1.S1_at	R	R	pmrna39288	pmrna39288	NA	NA	P22242	Desiccation-related protein PCC13-62	AT1G47980.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os04g33150.1	"desiccation-related protein PCC13-62 precursor, putative, expressed"	Medtr2g037670.1	"Desiccation-related protein PCC13-62 precursor, putative "	NA	NA	NA
PtpAffx.22209.1.S1_at	R	R	CK094003	CK094003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222096.1.S1_at	R	R	pmrna39312	pmrna39312	NA	NA	P75777	UPF0194 membrane protein ybhG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222097.1.S1_s_at	R	R	pmrna39313	pmrna39313	NA	NA	P75777	UPF0194 membrane protein ybhG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222100.1.S1_at	R	R	pmrna39316	pmrna39316	NA	NA	P03851	Uncharacterized 9.4 kDa protein	NA	NA	NA	NA	Medtr7g040040.1	IQ calmodulin-binding region 	NA	NA	NA
PtpAffx.222105.1.S1_at	R	R	pmrna39324	pmrna39324	NA	NA	P30749	Molybdopterin synthase catalytic subunit	AT2G43760.3	molybdopterin biosynthesis MoaE family protein 	LOC_Os02g04740.1	"molybdenum cofactor synthesis protein 2 large subunit, putative, expressed"	Medtr3g058670.1	Molybdopterin biosynthesis MoaE 	NA	NA	NA
PtpAffx.222106.1.S1_at	R	R	pmrna39325	pmrna39325	NA	NA	P30745	Molybdenum cofactor biosynthesis protein A	AT2G31955.2	cofactor of nitrate reductase and xanthine dehydrogenase 2 	LOC_Os12g32230.1	"molybdenum cofactor biosynthesis protein 1, putative, expressed"	Medtr5g015830.1	Molybdopterin cofactor biosynthesis MoaC region 	NA	NA	NA
PtpAffx.222110.1.S1_at	R	R	pmrna39332	pmrna39332	NA	NA	P0AAW4	Uncharacterized protein ybhP	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222111.1.S1_at	R	R	pmrna39333	pmrna39333	NA	NA	P0AAW4	Uncharacterized protein ybhP	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222115.1.S1_at	R	R	pmrna39342	pmrna39342	NA	NA	Q52977	Nitrogen regulation protein ntrB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222116.1.S1_at	R	R	pmrna39343	pmrna39343	NA	NA	B4T9U0	Multidrug resistance protein mdtA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222144.1.S1_at	R	R	pmrna39380	pmrna39380	NA	NA	A9BRF0	Malate synthase G	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222148.1.S1_at	R	R	pmrna39389	pmrna39389	NA	NA	Q9ABX9	Uncharacterized signaling protein CC_0091	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222149.1.S1_at	R	R	pmrna39390	pmrna39390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222157.1.S1_at	R	R	pmrna39398	pmrna39398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222158.1.S1_at	R	R	pmrna39399	pmrna39399	NA	NA	P40586	Uncharacterized protein YIR042C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222168.1.S1_s_at	R	R	pmrna39413	pmrna39413	scaffold_8:166955-167191(+) (11)	NA	Q38997	SNF1-related protein kinase catalytic subunit alpha KIN10	AT3G01090.2	SNF1 kinase homolog 10 	LOC_Os05g45420.3	"CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g092160.1	"Ubiquitin-associated; Tyrosine protein kinase; Kinase-associated, C-terminal; "	NA	NA	NA
PtpAffx.222174.1.S1_s_at	R	R	pmrna39422	pmrna39422	NA	NA	A4GYP3	"ATP synthase subunit alpha, chloroplastic"	ATCG00120.1	ATP synthase subunit alpha 	LOC_Os04g16740.1	"ATP synthase subunit alpha, putative, expressed"	Medtr4g042360.1	ATPase FliI/YscN 	NA	NA	NA
PtpAffx.222197.1.S1_at	R	R	pmrna39453	pmrna39453	NA	NA	Q9HYF9	Aliphatic sulfonates import ATP-binding protein SsuB 2	AT1G65410.1	non-intrinsic ABC protein 11 	LOC_Os11g29850.1	"ABC transporter, ATP-binding protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.222219.1.S1_at	R	R	pmrna39489	pmrna39489	NA	NA	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os03g36650.1	"cysteine-rich repeat secretory protein 55 precursor, putative, expressed"	Medtr2g103510.1	Protein of unknown function DUF26 	NA	NA	NA
PtpAffx.222368.1.S1_s_at	R	R	pmrna39724	pmrna39724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222369.1.S1_at	R	R	pmrna39725	pmrna39725	NA	NA	Q6UX73	UPF0764 protein C16orf89	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222369.1.S1_x_at	R	R	pmrna39725	pmrna39725	NA	NA	Q6UX73	UPF0764 protein C16orf89	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222370.1.S1_at	R	R	pmrna39726	pmrna39726	NA	NA	Q6B4Z3	Histone demethylase UTY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222370.1.S1_x_at	R	R	pmrna39726	pmrna39726	NA	NA	Q6B4Z3	Histone demethylase UTY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222371.1.S1_at	R	R	pmrna39727	pmrna39727	NA	NA	P08548	LINE-1 reverse transcriptase homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222372.1.S1_at	R	R	pmrna39728	pmrna39728	NA	NA	Q6B4Z3	Histone demethylase UTY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222373.1.S1_at	R	R	pmrna39729	pmrna39729	NA	NA	A6NNC1	Putative POM121-like protein 1-like	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222374.1.S1_at	R	R	pmrna39730	pmrna39730	NA	NA	Q96PM8	Putative B lymphocyte activation-related protein BC-1514	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222376.1.S1_x_at	R	R	pmrna39732	pmrna39732	NA	NA	A6NNC1	Putative POM121-like protein 1-like	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222405.1.S1_at	R	R	pmrna39776	pmrna39776	NA	NA	P0AEL6	Ferrienterobactin-binding periplasmic protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222406.1.S1_at	R	R	pmrna39777	pmrna39777	NA	NA	P24077	Enterobactin exporter entS	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222533.1.S1_at	R	R	pmrna40035	pmrna40035	NA	NA	A1WLD5	UvrABC system protein C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222534.1.S1_at	R	R	pmrna40036	pmrna40036	NA	NA	Q57N57	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	AT3G55030.1	phosphatidylglycerolphosphate synthase 2 	LOC_Os03g17520.1	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr1g146580.1	CDP-alcohol phosphatidyltransferase 	NA	NA	NA
PtpAffx.222541.1.S1_at	R	R	pmrna40049	pmrna40049	NA	NA	P08201	Nitrite reductase [NAD(P)H] large subunit	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222553.1.S1_at	R	R	pmrna40067	pmrna40067	NA	NA	P52002	Multidrug resistance protein mexB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222576.1.S1_at	R	R	pmrna40092	pmrna40092	NA	NA	Q57855	Uncharacterized ABC transporter ATP-binding protein MJ0412	AT1G67940.1	non-intrinsic ABC protein 3 	LOC_Os06g48060.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g154730.1	ABC transporter related 	NA	NA	NA
PtpAffx.222605.1.S1_at	R	R	pmrna40141	pmrna40141	scaffold_1:11504125-11504643(-) (11)	NA	Q8GU92	Probable pleiotropic drug resistance protein 2	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42370.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123550.1	AAA ATPase; 	NA	NA	NA
PtpAffx.222623.1.S1_at	R	R	pmrna40164	pmrna40164	NA	NA	Q888B8	Glutamate racemase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222637.1.S1_at	R	R	pmrna40183	pmrna40183	NA	NA	P28644	"28 kDa ribonucleoprotein, chloroplastic"	AT4G24770.1	31-kDa RNA binding protein 	LOC_Os09g39180.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g065570.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	NA	NA
PtpAffx.222638.1.S1_at	R	R	pmrna40184	pmrna40184	NA	NA	P52876	UPF0016 membrane protein sll0615	NA	NA	NA	NA	Medtr7g089540.1	Protein of unknown function UPF0016 	NA	NA	NA
PtpAffx.222643.1.S1_at	R	R	pmrna40189	pmrna40189	NA	NA	P32057	Putative colanic acid biosynthesis glycosyl transferase wcaI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222644.1.S1_at	R	R	pmrna40190	pmrna40190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222651.1.S1_at	R	R	pmrna40197	pmrna40197	NA	NA	P45423	Uncharacterized protein yhcG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222652.1.S1_at	R	R	pmrna40198	pmrna40198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222660.1.S1_at	R	R	pmrna40207	pmrna40207	NA	NA	Q9HUN6	UPF0313 protein PA4928	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222661.1.S1_at	R	R	pmrna40208	pmrna40208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222794.1.S1_at	R	R	pmrna40453	pmrna40453	NA	NA	O82500	Putative disease resistance protein At4g11170	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g011470.1	NB-ARC 	NA	NA	NA
PtpAffx.222806.1.S1_at	R	R	pmrna40470	pmrna40470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222816.1.S1_at	R	R	pmrna40484	pmrna40484	NA	NA	P06694	Transposase for transposon Tn21	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222820.1.S1_at	R	R	pmrna40488	pmrna40488	NA	NA	A9BNK6	3-oxoacyl-[acyl-carrier-protein] synthase 3	AT1G62640.2	3-ketoacyl-acyl carrier protein synthase III 	LOC_Os04g55060.1	"3-oxoacyl-synthase III, chloroplast precursor, putative, expressed"	Medtr4g021760.1	"3-oxoacyl- synthase III, chloroplast precursor, putative "	NA	NA	NA
PtpAffx.222821.1.S1_at	R	R	pmrna40489	pmrna40489	NA	NA	A9BNK7	Phosphate acyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222829.1.S1_at	R	R	pmrna40503	pmrna40503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222830.1.S1_at	R	R	pmrna40505	pmrna40505	NA	NA	P26395	Protein rfbI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222831.1.S1_at	R	R	pmrna40506	pmrna40506	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222844.1.S1_at	R	R	pmrna40523	pmrna40523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222845.1.S1_at	R	R	pmrna40524	pmrna40524	NA	NA	P08192	Bifunctional protein folC	AT5G05980.2	DHFS-FPGS homolog B 	LOC_Os12g42870.1	"Mur ligase family protein, putative, expressed"	Medtr3g092210.2	Folylpolyglutamate synthetase 	NA	NA	NA
PtpAffx.222850.1.S1_at	R	R	pmrna40532	pmrna40532	NA	NA	P39592	Uncharacterized HTH-type transcriptional regulator ywbI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222853.1.S1_at	R	R	pmrna40536	pmrna40536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222871.1.S1_at	R	R	pmrna40570	pmrna40570	NA	NA	B3R5N3	Glutaminyl-tRNA synthetase	AT1G25350.2	"glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative "	LOC_Os01g09000.1	"glutaminyl-tRNA synthetase, putative, expressed"	Medtr1g140680.1	"Glutamyl-tRNA synthetase archae/euk cytosolic; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 2; Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 1 "	NA	NA	NA
PtpAffx.222872.1.S1_at	R	R	pmrna40572	pmrna40572	NA	NA	P0A6G3	Protein ygaD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222873.1.S1_at	R	R	pmrna40573	pmrna40573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222874.1.S1_at	R	R	pmrna40574	pmrna40574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222880.1.S1_at	R	R	pmrna40584	pmrna40584	NA	NA	Q0H8X8	Probable intron-encoded endonuclease aI2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222881.1.S1_at	R	R	pmrna40586	pmrna40586	NA	NA	C0LGL9	LRR receptor-like serine/threonine-protein kinase FEI 2	AT1G78530.1	Protein kinase superfamily protein 	LOC_Os01g14510.1	"BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	NA	NA	NA
PtpAffx.222884.1.S1_at	R	R	pmrna40591	pmrna40591	NA	NA	Q12C38	Maf-like protein Bpro_1974	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222885.1.S1_at	R	R	pmrna40592	pmrna40592	NA	NA	P0A9J3	Ribonuclease G	AT2G04270.5	RNAse E/G-like 	LOC_Os08g23430.1	"starch binding domain containing protein, putative, expressed"	Medtr5g078000.1	"Haem peroxidase, plant/fungal/bacterial; Glycoside hydrolase, starch-binding; Ribonuclease E and G; "	NA	NA	NA
PtpAffx.222890.1.S1_at	R	R	pmrna40604	pmrna40604	NA	NA	P37032	Aconitate hydratase	AT4G35830.1	aconitase 1 	LOC_Os03g04410.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	NA	NA	NA
PtpAffx.222900.1.S1_at	R	R	pmrna40617	pmrna40617	NA	NA	P23485	Protein fecR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222901.1.S1_at	R	R	pmrna40618	pmrna40618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222917.1.S1_at	R	R	pmrna40645	pmrna40645	NA	NA	P51768	Baseplate assembly protein W	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222918.1.S1_at	R	R	pmrna40646	pmrna40646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222919.1.S1_at	R	R	pmrna40647	pmrna40647	NA	NA	P45198	Putative integrase/recombinase HI_1414	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222920.1.S1_at	R	R	pmrna40648	pmrna40648	NA	NA	P23874	Protein hipA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222921.1.S1_at	R	R	pmrna40649	pmrna40649	NA	NA	Q06419	Replication gene A protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222922.1.S1_at	R	R	pmrna40650	pmrna40650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222923.1.S1_at	R	R	pmrna40651	pmrna40651	NA	NA	P21679	Late control gene D protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222924.1.S1_at	R	R	pmrna40652	pmrna40652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222925.1.S1_at	R	R	pmrna40653	pmrna40653	NA	NA	P22502	Major tail tube protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222926.1.S1_at	R	R	pmrna40654	pmrna40654	NA	NA	P22501	Major tail sheath protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222930.1.S1_at	R	R	pmrna40660	pmrna40660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222932.1.S1_at	R	R	pmrna40662	pmrna40662	NA	NA	P52076	Transcriptional regulatory protein qseB	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222941.1.S1_at	R	R	pmrna40674	pmrna40674	NA	NA	Q4KMJ1	Cation transport regulator-like protein 2	AT1G44790.1	ChaC-like family protein 	LOC_Os04g37580.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr1g037330.1	ChaC-like protein 	NA	NA	NA
PtpAffx.222951.1.S1_at	R	R	pmrna40687	pmrna40687	NA	NA	P24305	Outer membrane porin protein 32	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222952.1.S1_at	R	R	pmrna40688	pmrna40688	NA	NA	P24305	Outer membrane porin protein 32	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.222975.1.S1_at	R	R	pmrna40724	pmrna40724	scaffold_8:18210906-18211119(+) (9)	NA	NA	NA	NA	NA	LOC_Os12g31470.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.222994.1.S1_at	R	R	pmrna40760	pmrna40760	scaffold_8:17015871-17016181(-) (11)	NA	O31581	AB hydrolase superfamily protein yfhM	AT4G15955.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g61360.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138440.1	Alpha/beta hydrolase fold 	NA	NA	NA
PtpAffx.223003.1.S1_at	R	R	pmrna40775	pmrna40775	NA	NA	A9BRT1	HPr kinase/phosphorylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223020.1.S1_at	R	R	pmrna40800	pmrna40800	NA	NA	O07007	HTH-type transcriptional regulator lutR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223021.1.S1_at	R	R	pmrna40801	pmrna40801	NA	NA	Q46890	Putative aldolase class 2 protein ygbL	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223022.1.S1_at	R	R	pmrna40802	pmrna40802	NA	NA	Q47162	Ferrichrysobactin receptor	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223024.1.S1_at	R	R	pmrna40808	pmrna40808	NA	NA	P43862	Protein smf	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223030.1.S1_at	R	R	pmrna40817	pmrna40817	NA	NA	P51174	"Long-chain specific acyl-CoA dehydrogenase, mitochondrial"	AT3G45300.1	isovaleryl-CoA-dehydrogenase 	LOC_Os05g03480.2	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.2	"Acyl-CoA dehydrogenase, N-terminal; "	NA	NA	NA
PtpAffx.223031.1.S1_at	R	R	pmrna40818	pmrna40818	NA	NA	Q816I1	2-succinylbenzoate--CoA ligase	AT5G16370.1	acyl activating enzyme 5 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g008840.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.223032.1.S1_at	R	R	pmrna40819	pmrna40819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223033.1.S1_at	R	R	pmrna40820	pmrna40820	NA	NA	Q3IJ24	3-ketoacyl-CoA thiolase	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os02g57260.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	AC233669_10.1	Thiolase AC233669.2 43191-49625 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.223034.1.S1_at	R	R	pmrna40821	pmrna40821	NA	NA	O18404	3-hydroxyacyl-CoA dehydrogenase type-2	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g30760.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.223035.1.S1_at	R	R	pmrna40822	pmrna40822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223036.1.S1_at	R	R	pmrna40823	pmrna40823	NA	NA	P70473	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223037.1.S1_at	R	R	pmrna40824	pmrna40824	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223041.1.S1_at	R	R	pmrna40829	pmrna40829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223042.1.S1_at	R	R	pmrna40830	pmrna40830	NA	NA	Q9KVD1	Coenzyme A biosynthesis bifunctional protein CoaBC	AT3G18030.1	HAL3-like protein A 	LOC_Os06g09910.2	"phosphopantothenoylcysteine decarboxylase, putative, expressed"	Medtr8g150970.1	Flavoprotein 	NA	NA	NA
PtpAffx.223045.1.S1_at	R	R	pmrna40837	pmrna40837	NA	NA	P0AG23	GTP pyrophosphokinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223046.1.S1_at	R	R	pmrna40838	pmrna40838	NA	NA	P0A951	Spermidine N(1)-acetyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223078.1.S1_at	R	R	pmrna40885	pmrna40885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22310.1.S1_at	R	R	CK095995	CK095995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22310.2.A1_at	R	R	CV268837	CV268837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223100.1.S1_at	R	R	pmrna40922	pmrna40922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223101.1.S1_at	R	R	pmrna40923	pmrna40923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223102.1.S1_at	R	R	pmrna40924	pmrna40924	NA	NA	Q8X4M5	HTH-type transcriptional regulator CynR	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223103.1.S1_at	R	R	pmrna40925	pmrna40925	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223104.1.S1_at	R	R	pmrna40926	pmrna40926	NA	NA	P15557	Acylase ACY 1	AT4G29210.2	gamma-glutamyl transpeptidase 4 	LOC_Os01g05810.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr6g093830.1	Gamma-glutamyltranspeptidase 	NA	NA	NA
PtpAffx.223105.1.S1_at	R	R	pmrna40927	pmrna40927	NA	NA	O50580	D-tagatose 3-epimerase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223116.1.S1_at	R	R	pmrna40952	pmrna40952	scaffold_15:7750299-7750463(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g24700.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	NA	NA	NA
PtpAffx.223122.1.S1_at	R	R	pmrna40960	pmrna40960	scaffold_15:7605467-7605706(+) (10)	NA	P34899	"Serine hydroxymethyltransferase, mitochondrial"	AT5G26780.2	serine hydroxymethyltransferase 2 	LOC_Os03g52840.3	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.2	Glycine hydroxymethyltransferase; 	NA	NA	NA
PtpAffx.223139.1.S1_s_at	R	R	pmrna40992	pmrna40992	scaffold_15:6634087-6634615(-) (11)	NA	NA	NA	AT1G74070.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g02080.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g116500.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	NA	NA
PtpAffx.223143.1.S1_at	R	R	pmrna41000	pmrna41000	NA	NA	P11444	Mandelate racemase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223145.1.S1_at	R	R	pmrna41002	pmrna41002	scaffold_12:12409192-12409226(-) (10)//scaffold_12:14882820-14882854(+) (10)//scaffold_12:14922240-14922274(+) (10)	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.2	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	NA	NA	NA
PtpAffx.223146.1.S1_at	R	R	pmrna41004	pmrna41004	NA	NA	Q9K0I2	Phosphoenolpyruvate synthase	AT4G15530.6	pyruvate orthophosphate dikinase 	NA	NA	Medtr8g140090.1	PEP-utilizing enzyme 	NA	NA	NA
PtpAffx.223159.1.S1_at	R	R	pmrna41022	pmrna41022	NA	NA	P82974	"1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223161.1.S1_at	R	R	pmrna41026	pmrna41026	NA	NA	P0AEZ7	Membrane-bound lytic murein transglycosylase D	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223162.1.S1_at	R	R	pmrna41027	pmrna41027	NA	NA	Q21YF8	Hydroxyacylglutathione hydrolase	AT2G31350.1	glyoxalase 2-5 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	NA	NA	NA
PtpAffx.223169.1.S1_at	R	R	pmrna41040	pmrna41040	NA	NA	Q8Y3A8	Methionyl-tRNA formyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223170.1.S1_at	R	R	pmrna41041	pmrna41041	NA	NA	Q8Y3B0	Peptide deformylase 1	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.223172.1.S1_at	R	R	pmrna41045	pmrna41045	NA	NA	NA	NA	AT2G07599.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01040.1). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223182.1.S1_at	R	R	pmrna41056	pmrna41056	NA	NA	A0JN27	General transcription factor IIH subunit 2	AT1G05055.1	general transcription factor II H2 	LOC_Os04g42990.1	"suppressor of stem-loop protein 1, putative, expressed"	Medtr7g106470.1	"von Willebrand factor, type A; Zinc finger, C2H2-type "	NA	NA	NA
PtpAffx.223183.1.S1_at	R	R	pmrna41057	pmrna41057	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223184.1.S1_at	R	R	pmrna41058	pmrna41058	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223185.1.S1_at	R	R	pmrna41059	pmrna41059	NA	NA	Q96MW7	Tigger transposable element-derived protein 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223186.1.S1_at	R	R	pmrna41060	pmrna41060	NA	NA	Q6B4Z3	Histone demethylase UTY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223186.1.S1_x_at	R	R	pmrna41060	pmrna41060	NA	NA	Q6B4Z3	Histone demethylase UTY	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223187.1.S1_at	R	R	pmrna41061	pmrna41061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223188.1.S1_at	R	R	pmrna41062	pmrna41062	NA	NA	Q1LJA4	UPF0234 protein Rmet_2899	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223196.1.S1_at	R	R	pmrna41071	pmrna41071	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223197.1.S1_at	R	R	pmrna41072	pmrna41072	NA	NA	A6NNC1	Putative POM121-like protein 1-like	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223197.1.S1_x_at	R	R	pmrna41072	pmrna41072	NA	NA	A6NNC1	Putative POM121-like protein 1-like	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223203.1.S1_at	R	R	pmrna41079	pmrna41079	NA	NA	Q1LJ29	Dihydrodipicolinate reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223208.1.S1_at	R	R	pmrna41085	pmrna41085	NA	NA	Q8Y0U9	UPF0307 protein RSc0944	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223212.1.S1_at	R	R	pmrna41089	pmrna41089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223213.1.S1_at	R	R	pmrna41090	pmrna41090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223214.1.S1_at	R	R	pmrna41091	pmrna41091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223215.1.S1_at	R	R	pmrna41092	pmrna41092	NA	NA	P18472	Protein traW	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223216.1.S1_at	R	R	pmrna41093	pmrna41093	NA	NA	P04140	Mercuric transport protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223217.1.S1_at	R	R	pmrna41094	pmrna41094	NA	NA	P00392	Mercuric reductase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223219.1.S1_at	R	R	pmrna41097	pmrna41097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223220.1.S1_at	R	R	pmrna41098	pmrna41098	NA	NA	O05253	Uncharacterized ABC transporter ATP-binding protein yufO	AT2G41700.1	ATP-binding cassette A1 	LOC_Os06g48060.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr7g089320.1	AAA ATPase 	NA	NA	NA
PtpAffx.223227.1.S1_at	R	R	pmrna41108	pmrna41108	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223339.1.S1_at	R	R	pmrna41281	pmrna41281	NA	NA	A1WCN6	Elongation factor Tu 2	AT4G02930.1	GTP binding Elongation factor Tu family protein 	LOC_Os03g63410.1	"elongation factor Tu, putative, expressed"	Medtr3g115100.1	Translation factor 	NA	NA	NA
PtpAffx.223340.1.S1_at	R	R	pmrna41282	pmrna41282	NA	NA	A9BPR7	30S ribosomal protein S10	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.223344.1.S1_at	R	R	pmrna41288	pmrna41288	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223345.1.S1_at	R	R	pmrna41290	pmrna41290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223346.1.S1_at	R	R	pmrna41291	pmrna41291	NA	NA	B4UD97	CinA-like protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223351.1.S1_at	R	R	pmrna41299	pmrna41299	NA	NA	A9BZW4	DNA ligase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223354.1.S1_at	R	R	pmrna41304	pmrna41304	NA	NA	P76085	Phenylacetate-coenzyme A ligase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223381.1.S1_at	R	R	pmrna41353	pmrna41353	scaffold_13:7648045-7648513(-) (11)	NA	Q99315	Transposon Ty3-G Gag-Pol polyprotein	NA	NA	LOC_Os01g29450.1	"retrotransposon protein, putative, unclassified"	Medtr2g021830.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.223387.1.S1_at	R	R	pmrna41365	pmrna41365	NA	NA	O48921	"Cytochrome P450 97B2, chloroplastic"	AT1G31800.1	"cytochrome P450, family 97, subfamily A, polypeptide 3 "	LOC_Os02g57290.4	"cytochrome P450, putative, expressed"	Medtr7g089220.1	Cytochrome P450 	NA	NA	NA
PtpAffx.223395.1.S1_at	R	R	pmrna41374	pmrna41374	scaffold_35:212865-213306(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223395.1.S1_x_at	R	R	pmrna41374	pmrna41374	scaffold_35:212865-213317(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223404.1.S1_at	R	R	pmrna41390	pmrna41390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223427.1.S1_at	R	R	pmrna41430	pmrna41430	scaffold_17:7381869-7382059(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223428.1.S1_at	R	R	pmrna41431	pmrna41431	scaffold_17:7382085-7382457(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223429.1.S1_at	R	R	pmrna41433	pmrna41433	NA	NA	Q589A5	"NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043710.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.223467.1.S1_at	R	R	pmrna41493	pmrna41493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223468.1.S1_at	R	R	pmrna41494	pmrna41494	NA	NA	P24640	Lipase 3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223469.1.S1_at	R	R	pmrna41495	pmrna41495	NA	NA	P31668	Phosphinothricin N-acetyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223470.1.S1_at	R	R	pmrna41496	pmrna41496	NA	NA	P76569	Uncharacterized protein yfgD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223473.1.S1_at	R	R	pmrna41501	pmrna41501	NA	NA	P81549	Probable TonB-dependent receptor BfrD	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223474.1.S1_at	R	R	pmrna41502	pmrna41502	NA	NA	P40415	Probable parvulin-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223475.1.S1_at	R	R	pmrna41503	pmrna41503	NA	NA	P02941	Methyl-accepting chemotaxis protein II	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223477.1.S1_at	R	R	pmrna41506	pmrna41506	NA	NA	Q46036	Outer membrane lipoprotein blc	AT5G58070.1	temperature-induced lipocalin 	LOC_Os08g34150.1	"OsTIL-2  Temperature-induced lipocalin-2, expressed"	Medtr8g146030.1	Lipocalin; Calycin_like 	NA	NA	NA
PtpAffx.223482.1.S1_at	R	R	pmrna41511	pmrna41511	NA	NA	P55189	Putative sulfate transporter ybaR	AT5G13550.1	sulfate transporter 4.1 	LOC_Os01g52130.1	"sulfate transporter, putative, expressed"	Medtr7g022760.1	Sulphate transporter 	NA	NA	NA
PtpAffx.223483.1.S1_at	R	R	pmrna41512	pmrna41512	NA	NA	Q1RHA0	NADH-quinone oxidoreductase subunit F	AT5G08530.1	51 kDa subunit of complex I 	LOC_Os07g45090.1	"NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed"	Medtr1g043800.1	"Respiratory-chain NADH dehydrogenase, 51 kDa subunit "	NA	NA	NA
PtpAffx.223500.1.S1_at	R	R	pmrna41539	pmrna41539	NA	NA	P17888	Primosomal protein N'	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223505.1.S1_at	R	R	pmrna41545	pmrna41545	NA	NA	P49322	Uncharacterized protein in cpoL 5'region (Fragment)	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223506.1.S1_at	R	R	pmrna41546	pmrna41546	NA	NA	P76113	Putative NADP-dependent oxidoreductase yncB	AT5G16990.1	Zinc-binding dehydrogenase family protein 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	NA	NA	NA
PtpAffx.223507.1.S1_at	R	R	pmrna41547	pmrna41547	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223508.1.S1_at	R	R	pmrna41548	pmrna41548	NA	NA	P0C6Q8	DNA adenine methylase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223509.1.S1_at	R	R	pmrna41549	pmrna41549	NA	NA	Q04064	Outer membrane porin protein BP0840	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223510.1.S1_at	R	R	pmrna41550	pmrna41550	NA	NA	P45754	General secretion pathway protein A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223511.1.S1_at	R	R	pmrna41551	pmrna41551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223512.1.S1_at	R	R	pmrna41552	pmrna41552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223513.1.S1_at	R	R	pmrna41553	pmrna41553	NA	NA	P14012	Arginase	AT4G08900.1	arginase 	LOC_Os04g01590.1	"arginase, putative, expressed"	Medtr4g026300.1	Arginase/agmatinase/formiminoglutamase 	NA	NA	NA
PtpAffx.223514.1.S1_at	R	R	pmrna41554	pmrna41554	NA	NA	Q51487	Outer membrane protein oprM	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223515.1.S1_at	R	R	pmrna41555	pmrna41555	NA	NA	O87838	Formyl-coenzyme A transferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223516.1.S1_at	R	R	pmrna41556	pmrna41556	NA	NA	P0A177	UPF0065 protein in clcB-clcD intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223517.1.S1_at	R	R	pmrna41557	pmrna41557	NA	NA	Q04222	Transposase for insertion sequence element IS1071 in transposon Tn5271	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223518.1.S1_at	R	R	pmrna41558	pmrna41558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223525.1.S1_at	R	R	pmrna41569	pmrna41569	NA	NA	Q09049	Cytochrome d ubiquinol oxidase subunit 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223527.1.S1_at	R	R	pmrna41571	pmrna41571	NA	NA	Q5P7P1	Serine hydroxymethyltransferase	AT4G32520.2	serine hydroxymethyltransferase 3 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr2g021910.1	Glycine hydroxymethyltransferase; 	NA	NA	NA
PtpAffx.223528.1.S1_at	R	R	pmrna41572	pmrna41572	NA	NA	P75806	Putative undecaprenyl-diphosphatase ybjG	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223534.1.S1_at	R	R	pmrna41585	pmrna41585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223545.1.S1_at	R	R	pmrna41598	pmrna41598	NA	NA	P27103	UPF0065 protein in tcbD-tcbE intergenic region	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223547.1.S1_at	R	R	pmrna41600	pmrna41600	NA	NA	Q57252	Uncharacterized protein HI_1163	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223548.1.S1_at	R	R	pmrna41601	pmrna41601	NA	NA	Q1LC96	Catalase-peroxidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223549.1.S1_at	R	R	pmrna41602	pmrna41602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223561.1.S1_at	R	R	pmrna41615	pmrna41615	NA	NA	P0A2I5	DNA topoisomerase 4 subunit B	AT5G04130.1	DNA GYRASE B2 	LOC_Os01g16290.1	"DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed"	Medtr7g106830.1	"ATP-binding region, ATPase-like "	NA	NA	NA
PtpAffx.223563.1.S1_at	R	R	pmrna41617	pmrna41617	NA	NA	A9BYK1	UPF0758 protein Daci_1904	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223567.1.S1_at	R	R	pmrna41623	pmrna41623	NA	NA	Q8UWF0	High-affinity choline transporter 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223579.1.S1_at	R	R	pmrna41637	pmrna41637	NA	NA	O05690	D-(-)-3-hydroxybutyrate oligomer hydrolase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223581.1.S1_at	R	R	pmrna41639	pmrna41639	NA	NA	P82597	Thermostable monoacylglycerol lipase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223590.1.S1_at	R	R	pmrna41653	pmrna41653	NA	NA	Q125P4	Lipoprotein signal peptidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223596.1.S1_at	R	R	pmrna41659	pmrna41659	NA	NA	Q8P8Y5	Uncharacterized protein XCC2094	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223597.1.S1_at	R	R	pmrna41660	pmrna41660	NA	NA	Q04064	Outer membrane porin protein BP0840	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223598.1.S1_at	R	R	pmrna41661	pmrna41661	NA	NA	Q6JQN1	Acyl-CoA dehydrogenase family member 10	AT3G06810.1	acyl-CoA dehydrogenase-related 	LOC_Os07g47820.1	"acyl-CoA dehydrogenase family member 10, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	NA	NA	NA
PtpAffx.223600.1.S1_at	R	R	pmrna41665	pmrna41665	NA	NA	P94437	Uncharacterized oxidoreductase yfiI	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223601.1.S1_at	R	R	pmrna41666	pmrna41666	NA	NA	P76079	Phenylacetic acid degradation protein paaC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223605.1.S1_at	R	R	pmrna41673	pmrna41673	NA	NA	C0SPB0	Uncharacterized acyl--CoA ligase ytcI	AT4G05160.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g04000.1	"AMP-binding domain containing protein, expressed"	Medtr7g099650.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.223615.1.S1_at	R	R	pmrna41685	pmrna41685	NA	NA	A5PKH3	Fumarylacetoacetase	AT1G12050.1	"fumarylacetoacetase, putative "	LOC_Os02g10310.1	"fumarylacetoacetase, putative, expressed"	Medtr2g029700.1	Fumarylacetoacetase; 	NA	NA	NA
PtpAffx.223620.1.S1_at	R	R	pmrna41690	pmrna41690	NA	NA	Q8XU11	Potassium-transporting ATPase B chain	AT4G33520.3	P-type ATP-ase 1 	LOC_Os02g07630.1	"copper-transporting ATPase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.223623.1.S1_at	R	R	pmrna41694	pmrna41694	NA	NA	Q9WWW2	Alcohol dehydrogenase [acceptor]	AT1G14185.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os02g45530.1	"HOTHEAD precursor, putative, expressed"	Medtr4g023240.1	Alcohol oxidase 	NA	NA	NA
PtpAffx.223626.1.S1_at	R	R	pmrna41703	pmrna41703	NA	NA	P44092	Peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223628.1.S1_at	R	R	pmrna41707	pmrna41707	scaffold_2226:1535-2229(-) (10)	NA	NA	NA	AT1G18010.1	Major facilitator superfamily protein 	LOC_Os04g01520.1	expressed protein	Medtr3g122090.1	"Protein of unknown function DUF895, eukaryotic "	NA	NA	NA
PtpAffx.223637.1.S1_at	R	R	pmrna41722	pmrna41722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223643.1.S1_at	R	R	pmrna41730	pmrna41730	NA	NA	P0AGF9	Threonine dehydratase catabolic	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223646.1.S1_at	R	R	pmrna41734	pmrna41734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223655.1.S1_at	R	R	pmrna41755	pmrna41755	scaffold_1:18955978-18956295(-) (11)	NA	Q9FLJ8	Probable receptor-like protein kinase At5g61350	AT5G61350.1	Protein kinase superfamily protein 	LOC_Os03g03280.1	"TKL_IRAK_CrRLK1L-1.6 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	NA	NA	NA
PtpAffx.223656.1.S1_at	R	R	pmrna41757	pmrna41757	scaffold_1:18950390-18950633(+) (11)	NA	Q6AT26	Probable cellulose synthase A catalytic subunit 1 [UDP-forming]	AT4G32410.1	cellulose synthase 1 	LOC_Os05g08370.1	"CESA1 - cellulose synthase, expressed"	Medtr3g136720.1	"Zinc finger, RING-type; Cellulose synthase "	NA	NA	NA
PtpAffx.223667.1.S1_at	R	R	pmrna41777	pmrna41777	NA	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	NA	NA	NA
PtpAffx.223678.1.S1_at	R	R	pmrna41798	pmrna41798	NA	NA	Q1LHM2	Glycine dehydrogenase [decarboxylating]	AT2G26080.1	glycine decarboxylase P-protein 2 	LOC_Os01g51410.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	NA	NA	NA
PtpAffx.223679.1.S1_at	R	R	pmrna41799	pmrna41799	NA	NA	O86564	L-serine dehydratase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223680.1.S1_at	R	R	pmrna41800	pmrna41800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223686.1.S1_at	R	R	pmrna41809	pmrna41809	NA	NA	A1TMB0	Prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223692.1.S1_at	R	R	pmrna41825	pmrna41825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223695.1.S1_at	R	R	pmrna41828	pmrna41828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223698.1.S1_at	R	R	pmrna41832	pmrna41832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223699.1.S1_at	R	R	pmrna41833	pmrna41833	NA	NA	Q45389	Protein BugT	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223700.1.S1_at	R	R	pmrna41834	pmrna41834	NA	NA	Q9ZWM5	"Chlorophyllide a oxygenase, chloroplastic"	AT2G24820.1	translocon at the inner envelope membrane of chloroplasts 55-II 	LOC_Os02g54980.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr3g138540.1	Rieske [2Fe-2S] region 	NA	NA	NA
PtpAffx.223706.1.S1_at	R	R	pmrna41843	pmrna41843	scaffold_17:7385546-7385981(+) (9)	NA	Q6YXR9	"NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic"	ATCG01250.1	NADH-Ubiquinone/plastoquinone (complex I) protein 	LOC_Os08g15248.1	"NADPH-dependent oxidoreductase, putative"	Medtr3g043710.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.223712.1.S1_at	R	R	pmrna41858	pmrna41858	NA	NA	NA	NA	AT3G12870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223718.1.S1_at	R	R	pmrna41866	pmrna41866	NA	NA	P06405	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g21250.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.223726.1.S1_at	R	R	pmrna41875	pmrna41875	NA	NA	Q8N2A0	Putative uncharacterized protein NCRNA00269	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223730.1.S1_s_at	R	R	pmrna41879	pmrna41879	NA	NA	NA	NA	NA	NA	LOC_Os04g16794.1	hypothetical protein	NA	NA	NA	NA	NA
PtpAffx.223730.1.S1_x_at	R	R	pmrna41879	pmrna41879	NA	NA	NA	NA	NA	NA	LOC_Os04g16794.1	hypothetical protein	NA	NA	NA	NA	NA
PtpAffx.223732.1.S1_s_at	R	R	pmrna41881	pmrna41881	scaffold_11:2241282-2241473(-) (11)	NA	P03938	Uncharacterized protein ycf68	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223734.1.S1_at	R	R	pmrna41885	pmrna41885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223739.1.S1_s_at	R	R	pmrna41897	pmrna41897	scaffold_81:37296-37450(-) (11)	NA	Q9SHJ5	Glycerol-3-phosphate acyltransferase 1	AT1G06520.1	glycerol-3-phosphate acyltransferase 1 	NA	NA	Medtr5g098930.1	Phospholipid/glycerol acyltransferase 	NA	NA	NA
PtpAffx.223743.1.S1_at	R	R	pmrna41901	pmrna41901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223748.1.S1_at	R	R	pmrna41906	pmrna41906	NA	NA	P08548	LINE-1 reverse transcriptase homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223749.1.S1_at	R	R	pmrna41907	pmrna41907	NA	NA	Q6ENQ6	Uncharacterized protein ycf76	NA	NA	LOC_Os04g16792.1	"uncharacterized protein ycf76, putative"	NA	NA	NA	NA	NA
PtpAffx.223755.1.S1_at	R	R	pmrna41914	pmrna41914	NA	NA	A4GYT3	"30S ribosomal protein S18, chloroplastic"	ATCG00650.1	ribosomal protein S18 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223756.1.S1_at	R	R	pmrna41918	pmrna41918	scaffold_12:10343743-10343988(+) (11)	NA	P29357	Chloroplast envelope membrane 70 kDa heat shock-related protein	AT3G12580.1	heat shock protein 70 	LOC_Os05g38530.1	"DnaK family protein, putative, expressed"	Medtr7g025700.1	Heat shock protein Hsp70; 	NA	NA	NA
PtpAffx.223757.1.S1_at	R	R	pmrna41919	pmrna41919	scaffold_12:1634842-1634991(+) (11)//scaffold_12:1661338-1661487(+) (11)//scaffold_219:11313-11462(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223758.1.S1_at	R	R	pmrna41920	pmrna41920	NA	NA	Q8WTZ3	Zinc finger protein ENSP00000375192	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223760.1.S1_at	R	R	pmrna41922	pmrna41922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223769.1.S1_at	R	R	pmrna41937	pmrna41937	NA	NA	P43793	NADP-specific glutamate dehydrogenase	AT1G51720.1	Amino acid dehydrogenase family protein 	LOC_Os01g37760.2	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	NA	NA	NA
PtpAffx.223770.1.S1_at	R	R	pmrna41939	pmrna41939	NA	NA	P08548	LINE-1 reverse transcriptase homolog	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223772.1.S1_at	R	R	pmrna41941	pmrna41941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223779.1.S1_at	R	R	pmrna41951	pmrna41951	NA	NA	P91924	ADP-ribosylation factor	AT5G14670.1	ADP-ribosylation factor A1B 	LOC_Os05g41060.2	"ADP-ribosylation factor, putative, expressed"	Medtr5g016470.1	ARF/SAR superfamily 	NA	NA	NA
PtpAffx.223779.1.S1_x_at	R	R	pmrna41951	pmrna41951	NA	NA	P91924	ADP-ribosylation factor	AT5G14670.1	ADP-ribosylation factor A1B 	LOC_Os05g41060.2	"ADP-ribosylation factor, putative, expressed"	Medtr5g016470.1	ARF/SAR superfamily 	NA	NA	NA
PtpAffx.223785.1.S1_at	R	R	pmrna41964	pmrna41964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223786.1.S1_at	R	R	pmrna41967	pmrna41967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223796.1.S1_at	R	R	pmrna41987	pmrna41987	NA	NA	Q0H8Y6	ATP synthase subunit a	ATMG01170.1	"ATPase, F0 complex, subunit A protein "	LOC_Os12g23610.1	"ATP synthase, A subunit family protein, putative"	NA	NA	NA	NA	NA
PtpAffx.223797.1.S1_at	R	R	pmrna41988	pmrna41988	scaffold_110:42691-42889(-) (11)	NA	NA	NA	NA	NA	LOC_Os06g15310.1	"retrotransposon protein, putative, Ty3-gypsy subclass"	NA	NA	NA	NA	NA
PtpAffx.223800.1.S1_at	R	R	pmrna41991	pmrna41991	NA	NA	P22190	Uncharacterized cox1 intron-2 37.2 kDa protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223804.1.S1_at	R	R	pmrna41997	pmrna41997	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.223819.1.S1_at	R	R	pmrna42025	pmrna42025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224052.1.S1_at	R	R	pmrna42287	pmrna42287	NA	NA	B0USM2	Uncharacterized protein YjeA	AT3G13490.1	"Lysyl-tRNA synthetase, class II "	LOC_Os02g41470.3	"tRNA synthetases class II domain containing protein, expressed"	Medtr2g041510.1	"Aspartyl-tRNA synthetase, class IIb; nucleic acid binding, OB-fold, tRNA/helicase-type "	NA	NA	NA
PtpAffx.224063.1.S1_at	R	R	pmrna42298	pmrna42298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224075.1.S1_at	R	R	pmrna42312	pmrna42312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224085.1.S1_at	R	R	pmrna42322	pmrna42322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224086.1.S1_at	R	R	pmrna42323	pmrna42323	NA	NA	NA	NA	NA	NA	LOC_Os03g53500.1	"helicase conserved C-terminal domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.224092.1.S1_at	R	R	pmrna42329	pmrna42329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224103.1.S1_at	R	R	pmrna42340	pmrna42340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224104.1.S1_at	R	R	pmrna42342	pmrna42342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224110.1.S1_at	R	R	pmrna42349	pmrna42349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224111.1.S1_at	R	R	pmrna42350	pmrna42350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224116.1.S1_at	R	R	pmrna42355	pmrna42355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224117.1.S1_at	R	R	pmrna42356	pmrna42356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224122.1.S1_at	R	R	pmrna42361	pmrna42361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224304.1.S1_at	R	R	pmrna42729	pmrna42729	NA	NA	Q0DV32	4-coumarate--CoA ligase-like 1	AT1G20560.1	acyl activating enzyme 1 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr5g023600.1	AMP-dependent synthetase and ligase 	NA	NA	NA
PtpAffx.224334.1.S1_at	R	R	pmrna42788	pmrna42788	NA	NA	P52837	Flavonol 4'-sulfotransferase	AT5G07000.1	sulfotransferase 2B 	LOC_Os11g26390.1	"sulfotransferase domain containing protein, expressed"	Medtr8g044180.1	Sulfotransferase 	NA	NA	NA
PtpAffx.224403.1.S1_at	R	R	pmrna42899	pmrna42899	NA	NA	Q14F96	"50S ribosomal protein L23, chloroplastic"	ATCG01300.1	ribosomal protein L23 	LOC_Os10g21358.1	"chloroplast 50S ribosomal protein L23, putative"	Medtr3g043770.1	"Ribosomal protein L2, bacterial and organelle form; Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.224422.1.S1_at	R	R	pmrna42929	pmrna42929	scaffold_9:12366599-12367033(-) (11)	NA	Q14F95	"50S ribosomal protein L2-A, chloroplastic"	ATCG01310.1	ribosomal protein L2 	LOC_Os10g21354.1	"chloroplast 50S ribosomal protein L2, putative"	Medtr4g042420.1	Translation protein SH3-like 	NA	NA	NA
PtpAffx.224471.1.S1_at	R	R	pmrna43035	pmrna43035	scaffold_5:7637303-7637513(+) (11)	NA	P52406	Endochitinase 4 (Fragment)	AT4G01700.1	Chitinase family protein 	LOC_Os05g33130.1	"CHIT17 - Chitinase family protein precursor, expressed"	Medtr8g088680.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	NA	NA	NA
PtpAffx.224472.1.S1_at	R	R	pmrna43036	pmrna43036	scaffold_5:11011991-11012595(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224479.1.S1_at	R	R	pmrna43055	pmrna43055	scaffold_5:19274548-19274984(-) (11)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os01g08500.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	NA	NA	NA
PtpAffx.224481.1.S1_at	R	R	pmrna43060	pmrna43060	scaffold_5:21227454-21228056(+) (9)	NA	Q0ZIZ3	Photosystem II CP47 chlorophyll apoprotein	ATCG00680.1	photosystem II reaction center protein B 	LOC_Os10g21310.1	"photosystem II P680 chlorophyll A apoprotein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.224496.1.S1_at	R	R	pmrna43084	pmrna43084	scaffold_5:24506099-24506772(+) (9)	NA	Q9AR14	Aquaporin PIP1-5	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os07g26660.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.224506.1.S1_at	R	R	pmrna43101	pmrna43101	scaffold_6:1097586-1099650(-) (10)	NA	P93531	Cytochrome P450 71D7	AT3G48310.1	"cytochrome P450, family 71, subfamily A, polypeptide 22 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr8g148470.1	Cytochrome P450 	NA	NA	NA
PtpAffx.224514.1.S1_at	R	R	pmrna43130	pmrna43130	scaffold_6:21759073-21759222(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224560.1.S1_at	R	R	pmrna43207	pmrna43207	NA	NA	Q2L901	Photosystem II CP43 chlorophyll apoprotein	ATCG00280.1	photosystem II reaction center protein C 	LOC_Os02g24632.1	"photosystem II 44 kDa reaction center protein, putative, expressed"	Medtr8g015970.1	Photosynthetic reaction centre protein; Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.224579.1.S1_at	R	R	pmrna43234	pmrna43234	scaffold_7:13406258-13406294(+) (11)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os09g08510.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	NA	NA	NA
PtpAffx.224584.1.S1_at	R	R	pmrna43249	pmrna43249	scaffold_7:14943680-14944018(+) (11)	NA	NA	NA	AT4G20520.1	RNA binding;RNA-directed DNA polymerases 	LOC_Os10g21850.1	"retrotransposon protein, putative, unclassified"	Medtr3g009340.1	RNA-directed DNA polymerase (Reverse transcriptase) 	NA	NA	NA
PtpAffx.224590.1.S1_at	R	R	pmrna43264	pmrna43264	scaffold_8:4234481-4235994(+) (10)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os05g28630.1	"leaf senescence related protein, putative, expressed"	Medtr5g090300.1	"TonB box, N-terminal "	NA	NA	NA
PtpAffx.224634.1.S1_at	R	R	pmrna43363	pmrna43363	NA	NA	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	NA	NA
PtpAffx.22480.1.S1_at	R	R	DN499901	DN499901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224806.1.S1_at	R	R	pmrna43667	pmrna43667	scaffold_12:9242149-9246838(-) (10)	NA	P27141	"Carbonic anhydrase, chloroplastic"	AT5G14740.1	carbonic anhydrase 2 	LOC_Os09g28910.1	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr5g035580.1	"Carbonic anhydrase, prokaryotic and plant "	NA	NA	NA
PtpAffx.224832.1.S1_at	R	R	pmrna43711	pmrna43711	NA	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os10g33080.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr5g104140.1	Protein kinase 	NA	NA	NA
PtpAffx.224838.1.S1_at	R	R	pmrna43718	pmrna43718	scaffold_13:2621406-2621619(-) (11)	NA	Q945U1	40S ribosomal protein S15	AT5G09510.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	NA	NA	NA
PtpAffx.224873.1.S1_at	R	R	pmrna43768	pmrna43768	scaffold_14:5276996-5280801(+) (10)	NA	O82616	Putative fructokinase-5	AT5G51830.1	pfkB-like carbohydrate kinase family protein 	LOC_Os06g12600.1	"kinase, pfkB family, putative, expressed"	Medtr5g086910.1	"Carbohydrate kinase, PfkB "	NA	NA	NA
PtpAffx.22490.1.S1_at	R	R	BU833827	BU833827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.224941.1.S1_at	R	R	pmrna43878	pmrna43878	NA	NA	Q332Y2	Photosystem II CP43 chlorophyll apoprotein	ATCG00280.1	photosystem II reaction center protein C 	LOC_Os10g21212.1	"photosystem II 44 kDa reaction center protein, putative"	Medtr8g015970.1	Photosynthetic reaction centre protein; Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.22497.1.S1_at	R	R	DN499161	DN499161	scaffold_13:2678786-2678899(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225039.1.S1_x_at	R	R	pmrna44077	pmrna44077	scaffold_19:2298198-2298737(-) (10)//scaffold_364:44976-45515(+) (10)	NA	P04323	Retrovirus-related Pol polyprotein from transposon 17.6	NA	NA	LOC_Os01g06700.1	"retrotransposon protein, putative, unclassified"	Medtr6g077060.1	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H 	NA	NA	NA
PtpAffx.225040.1.S1_at	R	R	pmrna44087	pmrna44087	NA	NA	Q9M088	"Glucan endo-1,3-beta-glucosidase 5"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os09g36280.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr3g109920.1	"Glycoside hydrolase, family 17 "	NA	NA	NA
PtpAffx.225239.1.S1_at	R	R	pmrna44435	pmrna44435	scaffold_4:15201683-15207816(-) (9)	NA	Q40392	TMV resistance protein N	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	NA	NA	Medtr3g025980.1	TIR; Disease resistance protein 	NA	NA	NA
PtpAffx.225240.1.S1_at	R	R	pmrna44436	pmrna44436	scaffold_4:15248661-15249038(+) (11)	NA	O65238	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370	AT5G35370.1	S-locus lectin protein kinase family protein 	LOC_Os02g52850.1	"receptor-like protein kinase like protein, putative, expressed"	Medtr3g097890.1	Protein kinase; Curculin-like (mannose-binding) lectin; N/apple PAN 	NA	NA	NA
PtpAffx.225266.1.S1_at	R	R	pmrna44495	pmrna44495	NA	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os01g36710.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	NA	NA	NA
PtpAffx.225387.1.S1_at	R	R	pmrna44701	pmrna44701	scaffold_12:12188336-12189170(-) (11)	NA	A8N5E5	Protein SEY1	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os12g41170.1	"SEY1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.225403.1.S1_at	R	R	pmrna44724	pmrna44724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22544.1.S1_at	R	R	DN497073	DN497073	scaffold_3:13847720-13847838(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225444.1.S1_at	R	R	pmrna44798	pmrna44798	NA	NA	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os01g54969.1	"O-methyltransferase, putative"	Medtr5g082580.1	"O-methyltransferase, family 2; Dimerisation "	NA	NA	NA
PtpAffx.225499.1.S1_at	R	R	pmrna44886	pmrna44886	scaffold_6:10675085-10675504(+) (11)	NA	A4GYX1	"NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic"	ATCG01100.1	NADH dehydrogenase family protein 	LOC_Os10g21396.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr4g022950.1	"Respiratory-chain NADH dehydrogenase, subunit 1 "	NA	NA	NA
PtpAffx.225523.1.S1_at	R	R	pmrna44929	pmrna44929	NA	NA	Q08855	Cytochrome c oxidase subunit 1	ATMG01360.1	cytochrome  oxidase 	LOC_Os12g33946.1	"cytochrome c oxidase subunit 1, putative"	Medtr1g006730.1	"Cytochrome c oxidase, subunit I "	NA	NA	NA
PtpAffx.225539.1.S1_at	R	R	pmrna44955	pmrna44955	NA	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr8g074670.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.225539.1.S1_x_at	R	R	pmrna44955	pmrna44955	NA	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr8g074670.1	TIR; NB-ARC 	NA	NA	NA
PtpAffx.225549.1.S1_s_at	R	R	pmrna44977	pmrna44977	NA	NA	A4GYQ5	Photosystem II CP43 chlorophyll apoprotein	ATCG00280.1	photosystem II reaction center protein C 	LOC_Os02g24632.1	"photosystem II 44 kDa reaction center protein, putative, expressed"	Medtr8g015970.1	Photosynthetic reaction centre protein; Photosystem antenna protein-like 	NA	NA	NA
PtpAffx.225571.1.S1_at	R	R	pmrna45005	pmrna45005	NA	NA	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os06g43930.1	"OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	NA	NA	NA
PtpAffx.225602.1.S1_at	R	R	pmrna45059	pmrna45059	scaffold_278:34001-34035(+) (11)	NA	NA	NA	AT2G13770.1	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os09g08510.1	"transposon protein, putative, Pong sub-class"	Medtr2g071720.1	Protein of unknown function DUF635 	NA	NA	NA
PtpAffx.225626.1.S1_at	R	R	pmrna45097	pmrna45097	NA	NA	A4GYT6	ATP-dependent Clp protease proteolytic subunit	ATCG00670.1	plastid-encoded CLP P 	LOC_Os08g15270.1	"ATP-dependent Clp protease proteolytic subunit, putative, expressed"	Medtr4g042480.1	"Peptidase S14, ClpP "	NA	NA	NA
PtpAffx.225626.1.S1_x_at	R	R	pmrna45097	pmrna45097	NA	NA	A4GYT6	ATP-dependent Clp protease proteolytic subunit	ATCG00670.1	plastid-encoded CLP P 	LOC_Os08g15270.1	"ATP-dependent Clp protease proteolytic subunit, putative, expressed"	Medtr4g042480.1	"Peptidase S14, ClpP "	NA	NA	NA
PtpAffx.22563.1.S1_at	R	R	BU893090	BU893090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225771.1.S1_at	R	R	pmrna45356	pmrna45356	NA	NA	P31674	40S ribosomal protein S15	AT1G04270.1	cytosolic ribosomal protein S15 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	NA	NA	NA
PtpAffx.22583.1.S1_at	R	R	BU889496	BU889496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225840.1.S1_at	R	R	pmrna45461	pmrna45461	NA	NA	NA	NA	AT5G61840.1	Exostosin family protein 	LOC_Os01g70200.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	NA
PtpAffx.22586.1.S1_at	R	R	DN495829	DN495829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.225892.1.S1_s_at	R	R	pmrna45539	pmrna45539	scaffold_2:17647925-17657219(+) (11)//scaffold_2:17657083-17657292(+) (10)	NA	A4QJX2	"50S ribosomal protein L2, chloroplastic"	ATCG01310.1	ribosomal protein L2 	LOC_Os09g24404.1	"chloroplast 50S ribosomal protein L2, putative"	Medtr3g043770.1	"Ribosomal protein L2, bacterial and organelle form; Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.225906.1.S1_s_at	R	R	pmrna45554	pmrna45554	NA	NA	Q8KWM1	Serine-aspartate repeat-containing protein I	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22636.1.S1_at	R	R	CK115931	CK115931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22637.1.S1_at	R	R	DN503454	DN503454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22639.1.S1_at	R	R	DN493427	DN493427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22640.1.A1_at	R	R	DN493386	DN493386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22648.1.A1_at	R	R	DN493055	DN493055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22652.1.S1_at	R	R	BU896347	BU896347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22681.1.S1_at	R	R	DN491568	DN491568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22687.1.S1_at	R	R	DN501425	DN501425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22714.2.S1_at	R	R	DN490806	DN490806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22731.1.A1_at	R	R	DN490167	DN490167	NA	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.22734.2.A1_at	R	R	DN490105	DN490105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22756.1.S1_at	R	R	BU863476	BU863476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22770.1.S1_at	R	R	DN487758	DN487758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22772.1.S1_at	R	R	BU874848	BU874848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22774.2.S1_at	R	R	DN487711	DN487711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22774.4.A1_a_at	R	R	CV267173	CV267173	scaffold_5:120311-120790(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22778.1.A1_at	R	R	DN487639	DN487639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22780.1.A1_at	R	R	DN487565	DN487565	NA	NA	P27934	Alpha-amylase isozyme 3E	AT1G69830.1	alpha-amylase-like 3 	LOC_Os01g51754.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.2	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	NA	NA	NA
PtpAffx.22784.1.S1_at	R	R	DN497109	DN497109	scaffold_15:735812-736073(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22785.1.A1_at	R	R	DN487455	DN487455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22794.1.S1_at	R	R	DN487129	DN487129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22800.1.S1_at	R	R	DN486850	DN486850	scaffold_15:12808601-12808868(+) (9)//scaffold_15:15018750-15019017(-) (9)	NA	NA	NA	AT5G14345.1	early nodulin-like protein 21 	LOC_Os04g57750.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g116560.1	Blue (type 1) copper domain 	NA	NA	NA
PtpAffx.22806.1.S1_at	R	R	CF236242	CF236242	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22806.2.A1_at	R	R	DN486776	DN486776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2281.2.A1_at	R	R	BP936535	BP936535	NA	NA	NA	NA	NA	NA	NA	NA	AC235022_1.1	"Transposase, IS4; Polynucleotidyl transferase, Ribonuclease H fold AC235022.1 2826-694 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.22810.1.A1_at	R	R	DN486664	DN486664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22821.2.A1_at	R	R	DN486451	DN486451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22828.1.S1_at	R	R	BU888181	BU888181	NA	NA	P0C035	RING-H2 finger protein ATL60	AT1G53820.1	RING/U-box superfamily protein 	LOC_Os12g02350.1	"RING-H2 finger protein, putative, expressed"	Medtr4g089780.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.22830.1.A1_at	R	R	DN486166	DN486166	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g088220.1	", putative "	NA	NA	NA
PtpAffx.22833.1.S1_at	R	R	DN486047	DN486047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22844.1.A1_at	R	R	DN485508	DN485508	NA	NA	Q17DT0	Ubiquitin-like modifier-activating enzyme 5	AT1G05350.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g30310.2	"ThiF family domain containing protein, putative, expressed"	Medtr2g052740.1	"D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; Molybdenum cofactor biosynthesis "	NA	NA	NA
PtpAffx.22857.1.A1_s_at	R	R	DN485059	DN485059	scaffold_10:9829667-9829740(+) (11)//scaffold_18:11353110-11353183(+) (11)//scaffold_5:665246-665319(-) (11)//scaffold_5:678973-679046(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22861.1.A1_at	R	R	DN484892	DN484892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22866.1.A1_at	R	R	DN484549	DN484549	NA	NA	O74836	60S ribosomal protein L1-B	AT2G27530.2	Ribosomal protein L1p/L10e family 	NA	NA	Medtr3g094120.1	Ribosomal protein L1 	NA	NA	NA
PtpAffx.22867.1.A1_at	R	R	CK105234	CK105234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22880.1.A1_at	R	R	BP936826	BP936826	NA	NA	Q9UQB9	Serine/threonine-protein kinase 13	AT4G32830.1	ataurora1 	LOC_Os01g09580.2	"CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g128170.1	Protein kinase 	NA	NA	NA
PtpAffx.22920.1.A1_at	R	R	BP935212	BP935212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.22948.1.S1_at	R	R	CX655388	CX655388	NA	NA	Q9SIB2	3-ketoacyl-CoA synthase 12	AT2G28630.1	3-ketoacyl-CoA synthase 12 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079200.1	Very-long-chain 3-ketoacyl-CoA synthase; 	NA	NA	NA
PtpAffx.23046.1.A1_at	R	R	BP930177	BP930177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.23380.2.S1_at	R	R	CX654371	CX654371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.23380.3.S1_at	R	R	CX655680	CX655680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2386.4.S1_at	R	R	DN493387	DN493387	NA	NA	O50001	Major allergen Pru ar 1	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	NA	NA	NA
PtpAffx.2390.3.A1_at	R	R	CK097146	CK097146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.23983.1.A1_at	R	R	CV280650	CV280650	scaffold_5:2738479-2738761(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24081.1.A1_at	R	R	CV275518	CV275518	NA	NA	Q6J1Y9	Ubiquitin carboxyl-terminal hydrolase 19	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os11g28365.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr2g104700.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	NA	NA	NA
PtpAffx.24090.1.A1_at	R	R	CV274984	CV274984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24114.1.A1_at	R	R	CV273913	CV273913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24120.1.A1_at	R	R	CV273488	CV273488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24132.1.A1_at	R	R	CV272926	CV272926	NA	NA	Q8L7T3	Ubiquitin-conjugating enzyme E2 20	AT1G50490.1	ubiquitin-conjugating enzyme 20 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g103970.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.24306.1.A1_at	R	R	CV265186	CV265186	NA	NA	P33081	Auxin-induced protein 15A	AT5G18060.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g097790.1	Auxin responsive SAUR protein 	NA	NA	NA
PtpAffx.24341.1.A1_at	R	R	CV263104	CV263104	scaffold_5:21358556-21359127(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24341.2.A1_at	R	R	CV263879	CV263879	scaffold_5:21358710-21359088(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24364.1.A1_at	R	R	CV262978	CV262978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24368.1.A1_at	R	R	CV262869	CV262869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24374.1.A1_at	R	R	CV262569	CV262569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24376.1.A1_at	R	R	CV262356	CV262356	scaffold_1:39221304-39221597(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24400.1.A1_a_at	R	R	BP936917	BP936917	NA	NA	Q67ZM7	"Probable phytol kinase 2, chloroplastic"	AT5G58560.1	Phosphatidate cytidylyltransferase family protein 	LOC_Os01g61560.1	"phosphatidate cytidylyltransferase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.2448.1.S1_at	R	R	CF231252	CF231252	NA	NA	NA	NA	NA	NA	LOC_Os07g05280.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.24483.1.A1_at	R	R	CV258086	CV258086	scaffold_12:10783199-10783536(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24497.1.A1_at	R	R	CV257713	CV257713	scaffold_6:11177356-11177601(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24506.1.A1_at	R	R	CV257310	CV257310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24519.1.A1_at	R	R	CV256945	CV256945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24526.1.A1_at	R	R	CV256778	CV256778	scaffold_19:890844-891183(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24547.1.A1_at	R	R	CV256333	CV256333	scaffold_5:7023838-7024221(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24556.1.A1_at	R	R	CV255932	CV255932	scaffold_16:958423-958862(-) (10)	NA	NA	NA	AT4G15020.2	hAT transposon superfamily 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24559.1.A1_at	R	R	CV255836	CV255836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24729.1.A1_at	R	R	CV248390	CV248390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2481.1.S1_at	R	R	DN498060	DN498060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.24899.1.A1_at	R	R	CV242244	CV242244	scaffold_14:11453061-11453296(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.12.S1_at	R	R	M25339.1	M25339.1	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.12.S1_x_at	R	R	M25339.1	M25339.1	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.13.S1_a_at	R	R	M25342.1	M25342.1	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.13.S1_x_at	R	R	M25342.1	M25342.1	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.162.S1_at	R	R	CV273771	CV273771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.163.A1_at	R	R	CV277998	CV277998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.171.A1_at	R	R	CV275381	CV275381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.196.A1_at	R	R	CV274991	CV274991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.22.A1_a_at	R	R	CV272359	CV272359	NA	NA	NA	NA	AT4G10000.2	Thioredoxin family protein 	NA	NA	Medtr3g013180.1	Thioredoxin-like fold 	NA	NA	NA
PtpAffx.249.22.A1_x_at	R	R	CV272359	CV272359	NA	NA	NA	NA	AT4G10000.2	Thioredoxin family protein 	NA	NA	Medtr3g013180.1	Thioredoxin-like fold 	NA	NA	NA
PtpAffx.249.259.S1_a_at	R	R	DN490050	DN490050	NA	NA	Q00451	36.4 kDa proline-rich protein	AT3G22120.1	cell wall-plasma membrane linker protein 	LOC_Os06g07220.1	"LTPL128 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g121420.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	NA	NA	NA
PtpAffx.249.263.A1_at	R	R	CV274899	CV274899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.271.S1_at	R	R	CV277379	CV277379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.284.A1_at	R	R	CV275865	CV275865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.33.A1_at	R	R	CV254267	CV254267	scaffold_14:17484961-17485029(+) (11)//scaffold_14:17544726-17544794(+) (11)//scaffold_14:17594862-17594930(+) (11)//scaffold_14:17673354-17673422(+) (11)//scaffold_14:17697560-17697628(-) (11)//scaffold_14:17712518-17712586(-) (11)//scaffold_17:2271261-2271329(+) (11)//scaffold_17:2290001-2290069(+) (11)//scaffold_17:2309836-2309904(+) (11)//scaffold_17:2320942-2321010(+) (11)//scaffold_17:2334850-2334918(+) (11)//scaffold_17:2347389-2347457(+) (11)//scaffold_17:2359958-2360026(+) (11)//scaffold_8:16159992-16160060(-) (11)//scaffold_8:16171026-16171094(-) (11)//scaffold_8:16173687-16173755(-) (11)//scaffold_8:16201143-16201211(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.333.S1_at	R	R	AJ772122	AJ772122	NA	NA	Q08298	Dehydration-responsive protein RD22	AT5G25610.1	BURP domain-containing protein 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr1g009560.1	BURP 	NA	NA	NA
PtpAffx.249.338.A1_a_at	R	R	CV278496	CV278496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.339.S1_at	R	R	CV273575	CV273575	NA	NA	NA	NA	NA	NA	LOC_Os12g31870.1	hypothetical protein	CU179634_36.1	hypothetical protein CU179634.6 130767-129473 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.249.357.A1_at	R	R	CV261428	CV261428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.377.A1_at	R	R	CA929194	CA929194	scaffold_5:22262506-22262746(-) (11)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.2	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	NA	NA	NA
PtpAffx.249.389.A1_at	R	R	CV276737	CV276737	NA	NA	NA	NA	AT4G26370.1	antitermination NusB domain-containing protein 	LOC_Os03g45400.1	"antitermination NusB domain-containing protein, putative, expressed"	Medtr4g115130.1	NusB/RsmB/TIM44 	NA	NA	NA
PtpAffx.249.403.S1_at	R	R	CV259499	CV259499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.406.A1_at	R	R	CV269626	CV269626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.414.S1_at	R	R	CV265609	CV265609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.420.A1_at	R	R	CV262823	CV262823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.422.A1_at	R	R	CX182071	CX182071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.425.A1_at	R	R	BP930864	BP930864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.431.S1_at	R	R	CX175723	CX175723	NA	NA	Q08298	Dehydration-responsive protein RD22	AT5G25610.1	BURP domain-containing protein 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr3g132690.1	BURP 	NA	NA	NA
PtpAffx.249.448.S1_s_at	R	R	BU824500	BU824500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.453.S1_a_at	R	R	CF230349	CF230349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.519.S1_at	R	R	BU889207	BU889207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.522.S1_at	R	R	DN500789	DN500789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.523.A1_at	R	R	BP927342	BP927342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.526.A1_at	R	R	CV261389	CV261389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.529.A1_a_at	R	R	CV271463	CV271463	scaffold_8:4820423-4820499(-) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os05g34270.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	NA	NA	NA
PtpAffx.249.538.A1_at	R	R	CV264721	CV264721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.539.A1_at	R	R	CV264974	CV264974	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.543.A1_at	R	R	CV268964	CV268964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.547.S1_at	R	R	CV266053	CV266053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.551.A1_at	R	R	CV269922	CV269922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.556.A1_s_at	R	R	CV263846	CV263846	NA	NA	Q9ZPI6	Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1	AT4G29010.1	Enoyl-CoA hydratase/isomerase family 	LOC_Os02g17390.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr6g099470.1	IQ calmodulin-binding region; Enoyl-CoA hydratase/isomerase 	NA	NA	NA
PtpAffx.249.580.A1_at	R	R	CV275370	CV275370	NA	NA	A9P822	S-adenosylmethionine synthase 1	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	NA	NA	NA
PtpAffx.249.590.S1_at	R	R	CK096101	CK096101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.601.A1_at	R	R	CV253384	CV253384	scaffold_11:7155916-7156179(+) (11)//scaffold_217:2910-3173(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.605.A1_at	R	R	CV276304	CV276304	NA	NA	NA	NA	AT1G14900.1	high mobility group A 	LOC_Os08g33190.1	"linker histone H1 and H5 family protein, expressed"	Medtr5g086060.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	NA	NA	NA
PtpAffx.249.622.A1_at	R	R	CV263466	CV263466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.661.A1_at	R	R	CV245143	CV245143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.662.A1_at	R	R	CV275810	CV275810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.676.A1_at	R	R	CV242973	CV242973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.686.S1_at	R	R	CV262164	CV262164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.687.A1_at	R	R	CV232788	CV232788	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.691.S1_at	R	R	CV262892	CV262892	NA	NA	Q40519	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	NA	NA	NA
PtpAffx.249.692.A1_s_at	R	R	DN491523	DN491523	NA	NA	P17784	Fructose-bisphosphate aldolase cytoplasmic isozyme	AT5G03690.2	Aldolase superfamily protein 	LOC_Os10g08022.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g077730.1	"Fructose-bisphosphate aldolase, class-I "	NA	NA	NA
PtpAffx.249.700.A1_at	R	R	CV272393	CV272393	NA	NA	P34790	Peptidyl-prolyl cis-trans isomerase CYP18-3	AT4G38740.1	rotamase CYP 1 	NA	NA	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	NA	NA
PtpAffx.249.716.A1_at	R	R	CV260753	CV260753	scaffold_1:11854531-11854765(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.718.A1_at	R	R	CV257721	CV257721	scaffold_16:6052188-6052346(+) (9)//scaffold_8:18833172-18833329(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.721.S1_at	R	R	BP930432	BP930432	NA	NA	NA	NA	AT3G08580.2	ADP/ATP carrier 1 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.249.732.S1_at	R	R	CK091155	CK091155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.735.A1_at	R	R	CK094450	CK094450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.742.S1_at	R	R	CV258574	CV258574	scaffold_2:2607341-2607436(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.750.A1_at	R	R	CV257031	CV257031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.752.S1_at	R	R	DN490091	DN490091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.762.A1_at	R	R	CV261856	CV261856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.765.A1_at	R	R	CV261353	CV261353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.766.A1_at	R	R	CV263836	CV263836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.770.A1_at	R	R	BP930063	BP930063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.774.S1_at	R	R	CV274967	CV274967	NA	NA	Q8TGM7	Uncharacterized protein ART2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.802.A1_at	R	R	CV267276	CV267276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.845.A1_at	R	R	CV272284	CV272284	NA	NA	P16335	Wound-responsive protein GWIN3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.862.A1_at	R	R	CV242616	CV242616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.866.A1_at	R	R	CV256246	CV256246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.868.A1_at	R	R	CV261370	CV261370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.249.891.S1_at	R	R	AJ773214	AJ773214	NA	NA	NA	NA	AT1G16270.2	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os07g25680.1	"protein kinase domain containing protein, expressed"	Medtr1g111680.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	NA	NA	NA
PtpAffx.249.98.S1_x_at	R	R	CV264671	CV264671	scaffold_3:2011357-2018717(+) (10)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	NA	NA	NA
PtpAffx.250001.1.S1_at	R	R	18389295	18389295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.250002.1.S1_s_at	R	R	7595519	7595519	scaffold_14:17484770-17484966(+) (10)//scaffold_14:17544535-17544731(+) (11)//scaffold_14:17673164-17673359(+) (9)//scaffold_14:17697623-17697819(-) (11)//scaffold_14:17712581-17712777(-) (11)//scaffold_16:6876854-6877050(+) (11)//scaffold_17:2271071-2271266(+) (10)//scaffold_17:2309645-2309841(+) (11)//scaffold_17:2320751-2320947(+) (11)//scaffold_17:2334659-2334855(+) (11)//scaffold_17:2347199-2347385(+) (10)//scaffold_17:2359788-2359963(+) (9)//scaffold_8:16160055-16160251(-) (11)//scaffold_8:16171089-16171285(-) (11)//scaffold_8:16173750-16173946(-) (11)//scaffold_8:16201206-16201402(-) (11)//scaffold_8:16296221-16296417(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.250004.1.S1_at	R	R	13936324-1	13936324-1	NA	NA	Q3BAI2	Uncharacterized protein ORF91	NA	NA	LOC_Os01g57968.1	expressed protein	Medtr3g169400.1	hypothetical protein 	NA	NA	NA
PtpAffx.250004.1.S1_s_at	R	R	13936324-1	13936324-1	NA	NA	Q3BAI2	Uncharacterized protein ORF91	NA	NA	LOC_Os01g57968.1	expressed protein	Medtr3g169400.1	hypothetical protein 	NA	NA	NA
PtpAffx.250005.1.S1_s_at	R	R	13936324-2	13936324-2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.250006.1.S1_at	R	R	13936324-3	13936324-3	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g076720.1	hypothetical protein 	NA	NA	NA
PtpAffx.25008.2.S1_at	R	R	CV281529	CV281529	scaffold_1:8128678-8128739(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.25107.1.A1_at	R	R	CV232778	CV232778	scaffold_10:15831770-15832053(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.25188.1.A1_at	R	R	CV229655	CV229655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.25342.2.A1_a_at	R	R	BP932801	BP932801	scaffold_10:12545615-12545900(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.25362.1.A1_at	R	R	CK095592	CK095592	NA	NA	NA	NA	AT1G69523.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51030.1	"methyltransferase domain containing protein, putative, expressed"	Medtr5g044980.1	Methyltransferase type 11 	NA	NA	NA
PtpAffx.25383.1.A1_at	R	R	CK096035	CK096035	NA	NA	Q9M2P4	E3 ubiquitin-protein ligase SINAT2	AT3G58040.1	seven in absentia of Arabidopsis 2 	LOC_Os05g14860.1	"seven in absentia protein family domain containing protein, expressed"	Medtr7g112270.1	"Zinc finger, RING-type; TRAF-like; "	NA	NA	NA
PtpAffx.256.5.A1_at	R	R	CV276197	CV276197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.25699.1.S1_at	R	R	CV280935	CV280935	NA	NA	A4GYX1	"NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic"	ATCG01100.1	NADH dehydrogenase family protein 	LOC_Os10g21396.1	"NADPH-dependent oxidoreductase, putative, expressed"	Medtr4g022970.1	"NADH-ubiquinone oxidoreductase, chain 49kDa; Respiratory-chain NADH dehydrogenase, subunit 1 "	NA	NA	NA
PtpAffx.258.6.A1_at	R	R	CV231283	CV231283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2587.2.S1_at	R	R	CF233078	CF233078	NA	NA	Q9JK72	Copper chaperone for superoxide dismutase	AT1G12520.1	copper chaperone for SOD1 	LOC_Os04g48410.1	"copper chaperone for superoxide dismutase, putative, expressed"	Medtr8g106410.1	"Superoxide dismutase, copper/zinc binding; Heavy metal transport/detoxification protein "	NA	NA	NA
PtpAffx.25946.3.A1_at	R	R	CK095400	CK095400	NA	NA	NA	NA	AT3G17800.2	Protein of unknown function (DUF760) 	LOC_Os03g50870.1	expressed protein	Medtr4g154570.1	Protein of unknown function DUF760 	NA	NA	NA
PtpAffx.26074.1.S1_at	R	R	CK115503	CK115503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26140.1.S1_at	R	R	CK111150	CK111150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26140.2.A1_at	R	R	DN487118	DN487118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26183.1.S1_at	R	R	DN493948	DN493948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26247.1.S1_at	R	R	CK106265	CK106265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26267.1.S1_at	R	R	CK095584	CK095584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26293.1.S1_at	R	R	CK094899	CK094899	NA	NA	P23514	Coatomer subunit beta	AT4G31490.1	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138730.1	Protein of unknown function DUF1606 	NA	NA	NA
PtpAffx.26294.1.S1_at	R	R	CK094894	CK094894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26295.1.S1_at	R	R	CK104808	CK104808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26306.1.S1_at	R	R	BI123702	BI123702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26420.1.A1_at	R	R	CK097944	CK097944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26422.1.S1_at	R	R	BU824638	BU824638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26427.1.A1_at	R	R	CK097670	CK097670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26438.1.A1_at	R	R	CK097399	CK097399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26445.1.S1_at	R	R	CK097103	CK097103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26446.1.S1_at	R	R	CF234606	CF234606	NA	NA	Q0WQ57	Auxilin-related protein 2	AT4G12770.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g36180.1	"auxilin, putative, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	NA	NA	NA
PtpAffx.26457.1.A1_at	R	R	CK096685	CK096685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26491.1.S1_at	R	R	DN496826	DN496826	NA	NA	P22151	Glucose-repressible gene protein	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26498.1.A1_at	R	R	CK095107	CK095107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26500.1.A1_at	R	R	CK095031	CK095031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26504.1.S1_at	R	R	CK094908	CK094908	NA	NA	P35573	Glycogen debranching enzyme	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26505.1.A1_at	R	R	CK094886	CK094886	NA	NA	O24573	60S acidic ribosomal protein P0	AT3G09200.2	Ribosomal protein L10 family protein 	NA	NA	Medtr3g135890.1	Ribosomal protein L10; Ribosomal protein 60S 	NA	NA	NA
PtpAffx.26510.1.A1_s_at	R	R	CK094755	CK094755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26513.1.A1_at	R	R	CK094709	CK094709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26517.1.S1_at	R	R	CK094602	CK094602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26523.1.S1_at	R	R	CK094386	CK094386	NA	NA	P87068	Autophagy-related protein 8	AT2G05630.1	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	NA	NA	NA
PtpAffx.26525.1.S1_at	R	R	CK104332	CK104332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26526.1.A1_at	R	R	CK094316	CK094316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26529.1.S1_at	R	R	CK104129	CK104129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26539.1.A1_at	R	R	CK093659	CK093659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26572.1.A1_at	R	R	CK091413	CK091413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26580.3.S1_at	R	R	CK096264	CK096264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26601.1.A1_at	R	R	CK090704	CK090704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26618.1.A1_at	R	R	CK089997	CK089997	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26640.1.A1_at	R	R	CK087731	CK087731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26657.2.S1_at	R	R	DN503487	DN503487	NA	NA	Q0JF03	Actin-related protein 9	AT5G43500.1	actin-related protein 9 	LOC_Os04g09860.3	"actin, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.26725.1.S1_at	R	R	CV263716	CV263716	scaffold_1:46569368-46569871(+) (11)	NA	P62311	U6 snRNA-associated Sm-like protein LSm3	AT1G21190.1	Small nuclear ribonucleoprotein family protein 	LOC_Os01g64690.1	"LSM domain containing protein, expressed"	Medtr4g115290.1	"Like-Sm ribonucleoprotein-related, core "	NA	NA	NA
PtpAffx.26773.2.A1_at	R	R	CF232644	CF232644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.26818.1.A1_at	R	R	BP935789	BP935789	NA	NA	O48684	Probable galacturonosyltransferase-like 8	AT1G24170.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g24510.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g111450.1	"Glycosyl transferase, family 8 "	NA	NA	NA
PtpAffx.27027.2.A1_at	R	R	CV282321	CV282321	NA	NA	O22643	Acyl-CoA-binding protein	AT1G31812.1	acyl-CoA-binding protein 6 	LOC_Os08g06550.1	"acyl CoA binding protein, putative, expressed"	Medtr5g026900.1	"Acyl-coA-binding protein, ACBP "	NA	NA	NA
PtpAffx.2704.3.S1_at	R	R	CK094650	CK094650	NA	NA	NA	NA	AT4G14840.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22520.1); Has 1681 Blast hits to 1532 proteins in 283 species: Archae - 19; Bacteria - 179; Metazoa - 579; Fungi - 131; Plants - 223; Viruses - 5; Other Eukaryotes - 545 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.27445.1.S1_at	R	R	DN495793	DN495793	scaffold_2:12963571-12963876(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.27477.1.S1_at	R	R	BU888841	BU888841	NA	NA	A4GYS4	Apocytochrome f	ATCG00540.1	photosynthetic electron transfer A 	LOC_Os10g21290.1	"apocytochrome f precursor, putative"	NA	NA	NA	NA	NA
PtpAffx.27650.4.A1_at	R	R	CV272563	CV272563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2772.4.A1_at	R	R	CK093150	CK093150	NA	NA	NA	NA	AT2G34680.1	Outer arm dynein light chain 1 protein 	LOC_Os07g05470.2	"AIR9 protein, putative, expressed"	Medtr2g055450.1	Leucine-rich repeat 	NA	NA	NA
PtpAffx.27728.1.S1_at	R	R	BU895296	BU895296	scaffold_1:13134938-13134977(-) (9)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT3G14270.1	phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os03g28140.1	"1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	NA	NA	NA
PtpAffx.27792.1.S1_s_at	R	R	BU869615	BU869615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.27868.1.S1_at	R	R	CV258914	CV258914	NA	NA	NA	NA	AT1G04210.1	Leucine-rich repeat protein kinase family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2791.4.S1_at	R	R	CV263094	CV263094	NA	NA	P46300	40S ribosomal protein S4	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	NA	NA
PtpAffx.2793.1.S1_at	R	R	CK106891	CK106891	scaffold_14:9988110-9988159(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2800.1.S1_at	R	R	BU822252	BU822252	scaffold_11:7473079-7473372(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28062.1.S1_at	R	R	BU823365	BU823365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28072.1.S1_at	R	R	BU823039	BU823039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28139.1.S1_at	R	R	CK096537	CK096537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28253.1.S1_at	R	R	BU812692	BU812692	scaffold_1:32738880-32738973(+) (11)//scaffold_95:3943-4036(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28283.1.S1_at	R	R	DN500476	DN500476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.283.4.A1_x_at	R	R	CF229236	CF229236	NA	NA	P13708	Sucrose synthase	AT3G43190.1	sucrose synthase 4 	LOC_Os06g09450.7	"sucrose synthase, putative, expressed"	Medtr8g133160.1	Sucrose synthase 	NA	NA	NA
PtpAffx.28482.1.S1_at	R	R	CK105032	CK105032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28526.1.S1_at	R	R	BI123085	BI123085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28548.1.S1_at	R	R	CK093847	CK093847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2868.2.A1_at	R	R	DN485843	DN485843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.287.1.S1_at	R	R	BP932883	BP932883	NA	NA	P24397	Hyoscyamine 6-dioxygenase	AT4G10490.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g03034.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.28733.1.S1_at	R	R	AY491499.1	AY491499.1	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g005350.1	"Cytochrome c biogenesis ccmF-like mitochondrial protein, putative "	NA	NA	NA
PtpAffx.28734.1.S1_at	R	R	AY374983.2	AY374983.2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28736.1.S1_at	R	R	AY302063.1	AY302063.1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28818.1.S1_at	R	R	BU812529	BU812529	scaffold_9:3938047-3938344(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2882.1.S1_at	R	R	BU812772	BU812772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.2889.1.S1_at	R	R	AJ777876	AJ777876	NA	NA	NA	NA	AT4G17900.1	PLATZ transcription factor family protein 	LOC_Os04g50120.1	"zinc-binding protein, putative, expressed"	Medtr8g078180.1	Protein of unknown function DUF597 	NA	NA	NA
PtpAffx.28994.1.A1_at	R	R	DN493089	DN493089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.28996.1.A1_at	R	R	DN492799	DN492799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29005.2.S1_at	R	R	DN492367	DN492367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29024.1.S1_at	R	R	DN491934	DN491934	scaffold_2:13813811-13814264(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29060.1.A1_at	R	R	DN490447	DN490447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29063.1.A1_at	R	R	DN490406	DN490406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29064.1.A1_at	R	R	DN490400	DN490400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29088.1.A1_at	R	R	DN489256	DN489256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.291.12.S1_at	R	R	BP934522	BP934522	NA	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08060.1	"elongation factor Tu, putative, expressed"	Medtr1g121590.1	"Translation elongation factor, GTP-binding "	NA	NA	NA
PtpAffx.291.9.A1_at	R	R	BP932935	BP932935	NA	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08060.1	"elongation factor Tu, putative, expressed"	Medtr1g121590.1	"Translation elongation factor, GTP-binding "	NA	NA	NA
PtpAffx.29111.1.A1_at	R	R	DN488221	DN488221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29112.1.A1_at	R	R	DN488208	DN488208	NA	NA	NA	NA	AT2G45620.1	Nucleotidyltransferase family protein 	LOC_Os10g11034.1	"caffeine-induced death protein 1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.29123.1.S1_at	R	R	BU874942	BU874942	NA	NA	P00402	Cytochrome c oxidase subunit 1	ATMG01360.1	cytochrome  oxidase 	LOC_Os12g33946.1	"cytochrome c oxidase subunit 1, putative"	Medtr1g006730.1	"Cytochrome c oxidase, subunit I "	NA	NA	NA
PtpAffx.29123.2.A1_at	R	R	DN487745	DN487745	NA	NA	P20681	Cytochrome c oxidase subunit 1	ATMG01360.1	cytochrome  oxidase 	LOC_Os12g33946.1	"cytochrome c oxidase subunit 1, putative"	Medtr1g006730.1	"Cytochrome c oxidase, subunit I "	NA	NA	NA
PtpAffx.29124.1.A1_at	R	R	DN487741	DN487741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29144.1.A1_at	R	R	DN486996	DN486996	NA	NA	NA	NA	NA	NA	LOC_Os06g41750.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.29146.1.A1_at	R	R	DN486872	DN486872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29152.1.A1_at	R	R	DN486802	DN486802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29157.1.S1_at	R	R	BU871523	BU871523	scaffold_2:3806613-3806840(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29160.1.A1_at	R	R	DN486624	DN486624	NA	NA	Q68FT3	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2	AT5G49555.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os12g43590.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr8g093280.1	Phytoene dehydrogenase-related protein 	NA	NA	NA
PtpAffx.29166.1.S1_at	R	R	DN496011	DN496011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29175.1.S1_at	R	R	DN485940	DN485940	NA	NA	P33527	Multidrug resistance-associated protein 1	AT1G30400.2	multidrug resistance-associated protein 1 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	NA	NA	NA
PtpAffx.29183.1.S1_at	R	R	BU812898	BU812898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29205.1.A1_at	R	R	DN484540	DN484540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29214.1.A1_at	R	R	DN484339	DN484339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29286.1.A1_at	R	R	BP934227	BP934227	scaffold_7:3339743-3340164(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29362.1.A1_at	R	R	CV266575	CV266575	NA	NA	Q8LAA6	Probable aquaporin PIP1-5	AT4G23400.1	plasma membrane intrinsic protein 1;5 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr3g093260.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.29362.2.A1_at	R	R	BP931014	BP931014	NA	NA	P25794	Probable aquaporin PIP-type 7a	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	NA	NA	NA
PtpAffx.29368.1.A1_at	R	R	BP930713	BP930713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29374.1.A1_at	R	R	BP930524	BP930524	scaffold_5:21176778-21176936(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29393.1.S1_a_at	R	R	BP922018	BP922018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.29654.2.S1_at	R	R	CV274846	CV274846	NA	NA	Q42563	Adenine phosphoribosyltransferase 2	AT5G11160.1	adenine phosphoribosyltransferase 5 	LOC_Os04g42520.1	"phosphoribosyl transferase, putative, expressed"	Medtr3g137510.1	Phosphoribosyltransferase 	NA	NA	NA
PtpAffx.2998.1.S1_at	R	R	CK094434	CK094434	NA	NA	Q9P720	60S ribosomal protein L16	AT3G07110.1	Ribosomal protein L13 family protein 	LOC_Os03g54890.1	"ribosomal protein L13, putative, expressed"	Medtr5g091220.1	"Ribosomal protein L13, archea and eukaryotic form "	NA	NA	NA
PtpAffx.2999.1.S1_at	R	R	CK094423	CK094423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30130.2.A1_at	R	R	AJ772193	AJ772193	NA	NA	Q4ZZU5	Amino-acid acetyltransferase	AT4G37670.2	N-acetyl-l-glutamate synthase 2 	LOC_Os03g31690.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g015470.1	Amino-acid N-acetyltransferase (ArgA) 	NA	NA	NA
PtpAffx.30330.1.A1_at	R	R	CV279038	CV279038	NA	NA	NA	NA	AT4G39250.1	RAD-like 1 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr7g106250.1	Homeodomain-related; 	NA	NA	NA
PtpAffx.30375.2.A1_at	R	R	CK097256	CK097256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30425.1.A1_at	R	R	CV276422	CV276422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30426.1.A1_at	R	R	CV276406	CV276406	NA	NA	NA	NA	NA	NA	NA	NA	Medtr8g096400.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	NA	NA	NA
PtpAffx.30431.1.A1_at	R	R	CV276143	CV276143	scaffold_9:8188792-8189064(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30432.1.A1_at	R	R	CV276128	CV276128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30435.1.A1_at	R	R	CV276087	CV276087	NA	NA	P0C2I0	60S ribosomal protein L20	AT1G29970.2	60S ribosomal protein L18A-1 	LOC_Os01g54870.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	NA	NA	NA
PtpAffx.30442.1.A1_at	R	R	CV275857	CV275857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30446.1.A1_at	R	R	CV275723	CV275723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30450.1.A1_at	R	R	CV275570	CV275570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30452.1.A1_at	R	R	CV275503	CV275503	NA	NA	P55390	Probable cold shock protein y4cH	AT2G21060.1	glycine-rich protein 2B 	LOC_Os02g02870.1	"glycine-rich protein 2, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.30454.2.S1_at	R	R	CV275464	CV275464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30459.1.A1_at	R	R	CV275249	CV275249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30460.1.A1_at	R	R	CV275205	CV275205	scaffold_12:10142289-10142721(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30464.1.A1_at	R	R	CV274959	CV274959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30468.1.A1_at	R	R	CV274739	CV274739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30473.1.A1_at	R	R	CV274678	CV274678	scaffold_14:10983570-10983870(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30474.1.A1_at	R	R	CV274675	CV274675	scaffold_2:17218957-17219238(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30476.1.A1_at	R	R	CV274591	CV274591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30486.1.A1_at	R	R	CV274052	CV274052	scaffold_1:33783694-33783833(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30490.1.A1_at	R	R	CV273739	CV273739	NA	NA	NA	NA	AT3G62580.1	Late embryogenesis abundant protein (LEA) family protein 	LOC_Os12g37060.1	expressed protein	Medtr1g107090.1	"Transmembrane protein 205, related "	NA	NA	NA
PtpAffx.30501.1.A1_at	R	R	CV273235	CV273235	NA	NA	O31519	Probable ABC transporter permease protein yesP	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30613.2.A1_a_at	R	R	CV267609	CV267609	scaffold_8:1790427-1790656(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30613.2.A1_at	R	R	CV267609	CV267609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30641.1.S1_at	R	R	CV230592	CV230592	NA	NA	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	AT1G56120.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os10g34220.1	"TKL_IRAK_DUF26-lf.1 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr3g086250.1	Protein kinase 	NA	NA	NA
PtpAffx.30704.1.A1_at	R	R	CV264147	CV264147	NA	NA	NA	NA	AT4G13810.2	receptor like protein 47 	NA	NA	Medtr5g102680.1	"Leucine-rich repeat, typical subtype "	NA	NA	NA
PtpAffx.30801.1.A1_at	R	R	CV260721	CV260721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30809.1.A1_at	R	R	CV260466	CV260466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30883.1.A1_at	R	R	CV257850	CV257850	scaffold_10:14390150-14390382(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30884.1.S1_at	R	R	CV263143	CV263143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30884.2.A1_at	R	R	CV257817	CV257817	scaffold_17:12575715-12575812(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30889.1.A1_at	R	R	CV254818	CV254818	scaffold_1:27070088-27070545(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.309.3.S1_at	R	R	BP932852	BP932852	NA	NA	Q852F6	Zinc transporter 2	AT1G55910.1	zinc transporter 11 precursor 	LOC_Os03g29850.1	"metal cation transporter, putative, expressed"	Medtr2g117090.1	Zinc/iron permease 	NA	NA	NA
PtpAffx.30916.1.A1_at	R	R	CV256392	CV256392	scaffold_4:7283013-7283499(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g12320.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	AC137826_30.1	"Putative gag-pol polyprotein, identical, AC137826.21 105206-105565 H EGN_Mt090430 200"	NA	NA	NA
PtpAffx.30940.1.A1_at	R	R	CV255493	CV255493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.30988.1.A1_at	R	R	CV253720	CV253720	NA	NA	NA	NA	AT1G05270.1	TraB family protein 	LOC_Os05g42010.1	"TraB family protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.31003.1.A1_at	R	R	CV253157	CV253157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31028.1.A1_at	R	R	CV251807	CV251807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31080.1.A1_at	R	R	CV248955	CV248955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31092.1.A1_at	R	R	CV248234	CV248234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31378.6.S1_at	R	R	BU821525	BU821525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.31463.3.S1_at	R	R	AJ776179	AJ776179	NA	NA	NA	NA	AT3G13235.3	ubiquitin family protein 	LOC_Os02g10510.1	"Ubiquitin family domain containing protein, expressed"	Medtr3g080400.1	"Peptidase aspartic, catalytic; UBA-like "	NA	NA	NA
PtpAffx.31469.1.A1_at	R	R	DN493005	DN493005	NA	NA	Q9ZUE0	Proline-rich receptor-like protein kinase PERK12	AT5G37790.1	Protein kinase superfamily protein 	LOC_Os03g13820.1	"protein kinase family protein, putative, expressed"	Medtr3g143050.1	Protein kinase; UspA 	NA	NA	NA
PtpAffx.31632.1.A1_at	R	R	CV282147	CV282147	NA	NA	NA	NA	AT5G61340.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g38810.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.3173.9.S1_at	R	R	CV262060	CV262060	NA	NA	NA	NA	AT4G38580.1	farnesylated protein 6 	LOC_Os04g17100.2	"heavy metal-associated domain containing protein, expressed"	Medtr4g098440.1	Heavy metal transport/detoxification protein 	NA	NA	NA
PtpAffx.32006.1.S1_at	R	R	DN487767	DN487767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3217.1.S1_at	R	R	BU835684	BU835684	scaffold_1:39340492-39340543(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3235.1.S1_at	R	R	DN498867	DN498867	NA	NA	NA	NA	AT1G50410.1	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related 	LOC_Os08g08220.2	"EDA16, putative, expressed"	Medtr2g014500.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	NA	NA
PtpAffx.32509.1.S1_at	R	R	CK112880	CK112880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32519.1.S1_s_at	R	R	CK112302	CK112302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32630.1.A1_at	R	R	DN489947	DN489947	NA	NA	Q42883	"Calcium-transporting ATPase, endoplasmic reticulum-type"	AT4G00900.1	ER-type Ca2+-ATPase 2 	LOC_Os05g02940.2	"calcium-transporting ATPase 2, endoplasmic reticulum-type, putative, expressed"	Medtr8g029470.1	Haloacid dehalogenase-like hydrolase 	NA	NA	NA
PtpAffx.32676.1.S1_at	R	R	CK105275	CK105275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32679.1.S1_at	R	R	CK095328	CK095328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32696.1.S1_at	R	R	BI125059	BI125059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3270.1.S1_at	R	R	BU871342	BU871342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32701.1.S1_at	R	R	CK094711	CK094711	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g139020.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; "	NA	NA	NA
PtpAffx.32717.1.S1_at	R	R	CK104251	CK104251	NA	NA	Q5HZ97	Transcription elongation factor SPT4	NA	NA	NA	NA	Medtr3g122710.1	Transcription initiation Spt4 	NA	NA	NA
PtpAffx.3283.1.S1_at	R	R	DN496626	DN496626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32843.1.S1_at	R	R	CF228684	CF228684	NA	NA	NA	NA	AT4G10270.1	Wound-responsive family protein 	LOC_Os04g54280.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr2g095470.1	"wound induced protein, putative "	NA	NA	NA
PtpAffx.32865.1.A1_at	R	R	CK097026	CK097026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32873.1.A1_at	R	R	CK096746	CK096746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32879.1.S1_at	R	R	CK096663	CK096663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32881.1.A1_at	R	R	CK096603	CK096603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32883.1.A1_at	R	R	CK096520	CK096520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3289.4.A1_at	R	R	DN486832	DN486832	NA	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.2	"ribosomal protein L7Ae, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.32899.1.A1_at	R	R	CK095938	CK095938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32921.1.S1_at	R	R	BI126573	BI126573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32922.1.S1_at	R	R	CK095264	CK095264	NA	NA	Q5KM05	Small COPII coat GTPase SAR1	AT1G56330.1	secretion-associated RAS 1B 	LOC_Os01g23620.1	"miro, putative, expressed"	Medtr8g138060.1	ARF/SAR superfamily 	NA	NA	NA
PtpAffx.32926.1.S1_at	R	R	CK095188	CK095188	NA	NA	Q6L0S6	Chaperone protein dnaJ	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32928.1.S1_at	R	R	CK105089	CK105089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32943.1.A1_at	R	R	CK094854	CK094854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32944.1.A1_at	R	R	CK094811	CK094811	NA	NA	Q9HGV0	60S acidic ribosomal protein P1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32946.1.S1_at	R	R	CK094752	CK094752	NA	NA	P40984	SUMO-conjugating enzyme ubc9	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os10g39120.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.32949.1.S1_at	R	R	CK094619	CK094619	NA	NA	P50623	SUMO-conjugating enzyme UBC9	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.32950.1.S1_at	R	R	BI124345	BI124345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32955.1.A1_at	R	R	CK094441	CK094441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3296.1.S1_at	R	R	DN486650	DN486650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32963.1.A1_at	R	R	CK094049	CK094049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32965.1.S1_at	R	R	CK108786	CK108786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32971.1.A1_at	R	R	CK093736	CK093736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32972.1.A1_at	R	R	CK093700	CK093700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3298.1.S1_at	R	R	CK110786	CK110786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3298.2.S1_at	R	R	CV261707	CV261707	scaffold_2:3713845-3714496(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32981.1.A1_at	R	R	CK092691	CK092691	scaffold_5:22389744-22389895(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32984.1.A1_at	R	R	CK092542	CK092542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.32989.1.A1_at	R	R	CK092112	CK092112	NA	NA	Q9LH89	Uncharacterized protein At3g28850	AT3G28850.1	Glutaredoxin family protein 	LOC_Os04g54860.1	"glutaredoxin, putative, expressed"	Medtr7g009510.1	Thioredoxin fold 	NA	NA	NA
PtpAffx.33020.1.A1_at	R	R	CK090873	CK090873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33030.1.A1_at	R	R	CK090468	CK090468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33036.1.A1_at	R	R	CK090008	CK090008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33040.1.A1_at	R	R	CK089705	CK089705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33045.1.A1_at	R	R	CK089245	CK089245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3344.1.A1_at	R	R	BP936417	BP936417	scaffold_2:4198579-4198732(-) (9)	NA	A9PBH9	Anamorsin homolog	AT5G18400.3	"Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis "	LOC_Os04g58564.3	"GA18008-PA, putative, expressed"	Medtr4g101340.1	Protein of unknown function DUF689 	NA	NA	NA
PtpAffx.33507.1.S1_at	R	R	CV256875	CV256875	scaffold_6:19643936-19647510(-) (11)	NA	NA	NA	NA	NA	LOC_Os05g02710.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.3355.1.A1_at	R	R	DN484651	DN484651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3357.1.S1_at	R	R	DN484599	DN484599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3359.1.S1_at	R	R	CK095178	CK095178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3361.1.S1_at	R	R	DN493891	DN493891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3376.1.A1_at	R	R	DN493373	DN493373	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3377.1.S1_at	R	R	DN493356	DN493356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33771.1.S1_at	R	R	DN486775	DN486775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33788.1.S1_at	R	R	DN496267	DN496267	scaffold_1:11034851-11035117(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3379.1.S1_at	R	R	DN493137	DN493137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33830.1.S1_at	R	R	DN495950	DN495950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.33885.1.S1_at	R	R	DN497601	DN497601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3390.1.S1_at	R	R	DN492740	DN492740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3394.1.A1_at	R	R	DN492451	DN492451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3396.1.A1_at	R	R	DN492372	DN492372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34133.1.S1_at	R	R	BU874129	BU874129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3437.2.S1_at	R	R	BU887223	BU887223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3452.1.A1_at	R	R	DN490582	DN490582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34540.1.A1_at	R	R	CK096157	CK096157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3459.6.S1_at	R	R	CV259941	CV259941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3464.1.A1_at	R	R	DN489965	DN489965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3470.1.S1_at	R	R	BU835565	BU835565	scaffold_13:2416460-2416737(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34843.1.S1_at	R	R	CK095388	CK095388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3485.1.S1_at	R	R	DN489125	DN489125	scaffold_1:6761393-6761904(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34853.1.A1_at	R	R	CK095256	CK095256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34857.1.S1_at	R	R	CK095160	CK095160	NA	NA	O00098	"Citrate synthase, mitochondrial"	AT2G44350.2	Citrate synthase family protein 	LOC_Os11g33240.2	"citrate synthase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.34889.1.S1_at	R	R	CK104517	CK104517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34897.1.S1_at	R	R	CK094404	CK094404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34900.1.S1_at	R	R	BI123554	BI123554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34901.1.S1_at	R	R	CK094356	CK094356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34924.2.S1_at	R	R	CK103922	CK103922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.34926.1.S1_at	R	R	BI122194	BI122194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3494.1.S1_at	R	R	DN498279	DN498279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3496.1.A1_at	R	R	DN488363	DN488363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3507.1.A1_at	R	R	DN487684	DN487684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3510.1.S1_at	R	R	BU873045	BU873045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35135.1.S1_at	R	R	DN493179	DN493179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3515.1.A1_at	R	R	DN487491	DN487491	NA	NA	Q10305	Probable secretory pathway GDP dissociation inhibitor 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3517.1.A1_at	R	R	DN487440	DN487440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3527.1.S1_at	R	R	DN496636	DN496636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3527.2.A1_at	R	R	DN487040	DN487040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35277.1.S1_at	R	R	BU874449	BU874449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35287.1.S1_at	R	R	DN497216	DN497216	NA	NA	NA	NA	AT5G17190.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g50210.1	"erwinia induced protein 2, putative, expressed"	Medtr4g157430.1	"Erwinia induced protein 2, putative "	NA	NA	NA
PtpAffx.35299.1.S1_at	R	R	DN487084	DN487084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3530.1.S1_at	R	R	DN496623	DN496623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35300.1.S1_at	R	R	BU869579	BU869579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35306.1.S1_at	R	R	BU893205	BU893205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35311.1.S1_at	R	R	DN486808	DN486808	scaffold_2:21208723-21209014(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35378.1.S1_at	R	R	DN493508	DN493508	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35383.1.S1_at	R	R	DN493389	DN493389	NA	NA	P38918	Aflatoxin B1 aldehyde reductase member 3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35388.1.A1_at	R	R	DN493061	DN493061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3543.1.A1_at	R	R	DN486360	DN486360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35463.1.A1_at	R	R	DN490363	DN490363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3548.1.A1_at	R	R	DN486307	DN486307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3550.1.S1_at	R	R	DN486291	DN486291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35506.1.S1_at	R	R	BP935717	BP935717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35506.2.S1_a_at	R	R	CA822031	CA822031	scaffold_8:8028282-8028721(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35536.1.A1_at	R	R	DN486578	DN486578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3554.1.A1_at	R	R	DN486226	DN486226	NA	NA	P60160	NADH-ubiquinone oxidoreductase chain 3	ATMG00990.1	NADH dehydrogenase 3 	LOC_Os12g34058.1	"NADH-ubiquinone oxidoreductase chain 3, putative"	Medtr1g005050.1	"NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 "	NA	NA	NA
PtpAffx.35542.1.S1_at	R	R	DN495964	DN495964	scaffold_18:10435387-10435519(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35550.1.A1_at	R	R	DN486044	DN486044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35588.1.A1_at	R	R	DN484416	DN484416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35589.1.S1_at	R	R	DN484392	DN484392	NA	NA	A8CEP3	Calmodulin	AT5G37780.1	calmodulin 1 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.35615.1.A1_at	R	R	BP937025	BP937025	NA	NA	P31023	"Dihydrolipoyl dehydrogenase, mitochondrial"	AT1G48030.2	mitochondrial lipoamide dehydrogenase 1 	LOC_Os05g06750.1	"dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	NA	NA	NA
PtpAffx.35637.1.A1_at	R	R	BP936152	BP936152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35793.1.A1_at	R	R	BP930547	BP930547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35799.1.A1_at	R	R	BP930236	BP930236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35826.1.S1_at	R	R	CV279725	CV279725	scaffold_13:14337106-14337606(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.35915.1.S1_at	R	R	CV269456	CV269456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.36032.1.S1_at	R	R	DN486693	DN486693	NA	NA	NA	NA	AT1G04030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1); Has 1835 Blast hits to 1511 proteins in 238 species: Archae - 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants - 187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink). 	LOC_Os04g43230.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.36136.1.S1_at	R	R	CX656299	CX656299	NA	NA	Q9FXD8	Probable pectate lyase 5	AT1G67750.1	Pectate lyase family protein 	LOC_Os04g05050.2	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	NA	NA	NA
PtpAffx.36261.1.S1_at	R	R	CK097515	CK097515	NA	NA	O80795	Probable inactive receptor-like protein kinase At1g65250	AT3G57710.1	Protein kinase superfamily protein 	LOC_Os04g51030.1	"wall-associated kinase 1, putative, expressed"	Medtr7g089090.1	Protein kinase; Peptidoglycan-binding LysM 	NA	NA	NA
PtpAffx.3661.2.A1_at	R	R	BP933831	BP933831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.36817.1.A1_at	R	R	CV277741	CV277741	NA	NA	P00299	"Plastocyanin A, chloroplastic"	AT1G20340.1	Cupredoxin superfamily protein 	LOC_Os06g01210.1	"plastocyanin, chloroplast precursor, putative, expressed"	Medtr3g157410.1	Blue (type 1) copper domain 	NA	NA	NA
PtpAffx.36847.1.A1_at	R	R	CV276303	CV276303	NA	NA	P35158	Spore maturation protein B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.36852.2.A1_at	R	R	DN489378	DN489378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.36860.1.A1_at	R	R	CV275874	CV275874	NA	NA	P91914	60S ribosomal protein L27	AT3G22230.1	Ribosomal L27e protein family 	LOC_Os02g18380.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr2g006490.1	Ribosomal protein L27e; KOW 	NA	NA	NA
PtpAffx.36872.1.A1_at	R	R	CV275290	CV275290	NA	NA	P34823	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08060.1	"elongation factor Tu, putative, expressed"	Medtr6g022710.1	"Translation elongation factor, GTP-binding "	NA	NA	NA
PtpAffx.36875.1.A1_at	R	R	CV275215	CV275215	scaffold_2:5264359-5264678(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.36894.1.A1_at	R	R	CV274465	CV274465	NA	NA	Q9M060	Eukaryotic translation initiation factor 6-2	AT3G55620.1	Translation initiation factor IF6 	LOC_Os07g44620.2	"eukaryotic translation initiation factor 6, putative, expressed"	Medtr6g071490.1	Translation initiation factor IF6 	NA	NA	NA
PtpAffx.37007.1.A1_at	R	R	CV269539	CV269539	NA	NA	Q69RC4	Autophagy-related protein 8A	AT2G05630.2	Ubiquitin-like superfamily protein 	LOC_Os07g32800.2	"autophagy-related protein, putative, expressed"	Medtr2g104190.1	Light chain 3 (LC3) 	NA	NA	NA
PtpAffx.37022.2.A1_at	R	R	CV279065	CV279065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37025.1.A1_at	R	R	CV269042	CV269042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37275.1.A1_at	R	R	CV258363	CV258363	scaffold_15:9673174-9673607(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37279.1.A1_at	R	R	CV258110	CV258110	scaffold_14:4472726-4472860(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37337.1.A1_at	R	R	CV255929	CV255929	scaffold_2:7042809-7043045(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37343.1.A1_at	R	R	CV255758	CV255758	scaffold_4:1413649-1414212(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37354.1.A1_at	R	R	CV255380	CV255380	scaffold_6:25841059-25841227(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3737.1.A1_at	R	R	BP932300	BP932300	scaffold_6:5156903-5160704(-) (10)	NA	NA	NA	AT5G57100.1	Nucleotide/sugar transporter family protein 	LOC_Os02g49260.1	"transporter-related, putative, expressed"	Medtr2g043150.1	Protein of unknown function DUF250 	NA	NA	NA
PtpAffx.37370.1.A1_at	R	R	CV254998	CV254998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.374.6.A1_at	R	R	CV253352	CV253352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37446.1.A1_at	R	R	CV252037	CV252037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37576.1.A1_at	R	R	CV245783	CV245783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37577.1.A1_at	R	R	CV245770	CV245770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.3761.3.A1_at	R	R	CV267096	CV267096	NA	NA	Q8VYW2	Inactive beta-amylase 9	AT5G18670.1	beta-amylase 3 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr2g025350.1	"Glycoside hydrolase, family 14 "	NA	NA	NA
PtpAffx.37636.1.A1_at	R	R	CV244036	CV244036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37655.1.A1_a_at	R	R	CV243323	CV243323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37795.1.A1_at	R	R	CV238973	CV238973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.378.3.S1_at	R	R	BP928598	BP928598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37809.2.A1_at	R	R	CV238314	CV238314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37824.1.A1_at	R	R	CV237570	CV237570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37831.1.A1_at	R	R	CV237214	CV237214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37859.1.A1_at	R	R	CV235999	CV235999	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37871.1.A1_at	R	R	CV235661	CV235661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.37955.1.A1_at	R	R	CV232517	CV232517	scaffold_4:18217391-18218748(+) (9)	NA	Q54CU7	Trafficking protein particle complex subunit 2-like protein	AT2G20930.1	SNARE-like superfamily protein 	LOC_Os09g36976.1	"trafficking protein particle complex subunit, putative, expressed"	Medtr7g092580.1	Longin-like 	NA	NA	NA
PtpAffx.37965.2.A1_at	R	R	CK097844	CK097844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.38005.1.A1_at	R	R	CV230195	CV230195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.38009.1.A1_at	R	R	CV229952	CV229952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.383.8.S1_at	R	R	CK095235	CK095235	NA	NA	NA	NA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g078480.1	Flavodoxin/nitric oxide synthase 	NA	NA	NA
PtpAffx.38633.1.A1_at	R	R	CV269284	CV269284	NA	NA	O65282	"20 kDa chaperonin, chloroplastic"	AT5G20720.3	chaperonin 20 	LOC_Os09g26730.1	"chaperonin, putative, expressed"	Medtr8g132830.1	GroES-like 	NA	NA	NA
PtpAffx.388.4.S1_at	R	R	BP930132	BP930132	NA	NA	Q9FLP9	GDP-L-galactose phosphorylase 2	AT5G55120.1	galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases 	LOC_Os12g08810.1	"VTC2, putative, expressed"	Medtr5g100780.1	"VTC2-like protein, putative "	NA	NA	NA
PtpAffx.38925.1.S1_at	R	R	DN493486	DN493486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39017.1.S1_at	R	R	CK110646	CK110646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39052.1.S1_at	R	R	DN493912	DN493912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39141.1.S1_at	R	R	BI127087	BI127087	NA	NA	P53733	"37S ribosomal protein S19, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39149.1.S1_at	R	R	CK105178	CK105178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39175.1.S1_at	R	R	CK104415	CK104415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39180.1.S1_at	R	R	CK094334	CK094334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39184.1.S1_at	R	R	BI123057	BI123057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39325.1.A1_at	R	R	CK096979	CK096979	NA	NA	Q8RXA8	"Nucleoside diphosphate kinase 4, chloroplastic"	AT4G11010.1	nucleoside diphosphate kinase 3 	LOC_Os05g51700.1	"nucleoside diphosphate kinase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.39360.1.A1_at	R	R	CK095878	CK095878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39369.1.S1_at	R	R	CK095452	CK095452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39370.1.A1_at	R	R	CK095407	CK095407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39372.1.S1_at	R	R	CK095311	CK095311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39375.1.A1_at	R	R	CK095263	CK095263	NA	NA	Q9X248	3-oxoacyl-[acyl-carrier-protein] reductase	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	NA	NA	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.39383.1.A1_at	R	R	CK095040	CK095040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39391.2.S1_at	R	R	CK094897	CK094897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39393.1.A1_at	R	R	CK104851	CK104851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39394.1.A1_at	R	R	CK094846	CK094846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39399.1.A1_at	R	R	BI124633	BI124633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39403.1.S1_at	R	R	BI124182	BI124182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39408.1.A1_at	R	R	CK094369	CK094369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39410.1.S1_at	R	R	CK104300	CK104300	NA	NA	Q711G1	Glucose-6-phosphate isomerase	AT5G42740.1	Sugar isomerase (SIS) family protein 	LOC_Os06g14510.3	"glucose-6-phosphate isomerase, putative, expressed"	Medtr6g009990.1	Phosphoglucose isomerase (PGI) 	NA	NA	NA
PtpAffx.39414.1.A1_at	R	R	CK094173	CK094173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39420.1.S1_at	R	R	BI122742	BI122742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39474.1.A1_at	R	R	CK091335	CK091335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.39538.1.A1_at	R	R	CK088688	CK088688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.40120.1.S1_at	R	R	CV279634	CV279634	NA	NA	NA	NA	AT2G37110.1	PLAC8 family protein 	LOC_Os01g06460.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr7g121070.1	Uncharacterized Cys-rich domain 	NA	NA	NA
PtpAffx.40167.1.S1_at	R	R	DN490106	DN490106	NA	NA	Q9SA23	Syntaxin-51	AT1G16240.2	syntaxin of plants 51 	LOC_Os08g17600.2	"SNARE domain containing protein, putative, expressed"	Medtr3g076210.1	Target SNARE coiled-coil region 	NA	NA	NA
PtpAffx.40269.1.S1_at	R	R	CK097693	CK097693	NA	NA	Q7XBQ9	Disease resistance protein RGA2	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) 	LOC_Os05g23990.1	"rp3 protein, putative, expressed"	Medtr5g036660.1	Leucine-rich repeat 	NA	NA	NA
PtpAffx.40315.1.S1_at	R	R	BU891653	BU891653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4070.2.S1_at	R	R	CV275345	CV275345	NA	NA	NA	NA	AT3G54400.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g46480.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr3g005860.1	"Peptidase A1, pepsin "	NA	NA	NA
PtpAffx.4070.3.S1_at	R	R	CX655364	CX655364	NA	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT5G07030.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g46480.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g043180.1	"Peptidase A1, pepsin "	NA	NA	NA
PtpAffx.40704.1.S1_at	R	R	DN487438	DN487438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.40719.1.S1_at	R	R	DN487091	DN487091	scaffold_18:10931615-10931696(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.40862.1.S1_at	R	R	BU834664	BU834664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41002.1.S1_at	R	R	CK107111	CK107111	NA	NA	Q55G10	Nicotinate phosphoribosyltransferase	AT4G36940.1	nicotinate phosphoribosyltransferase 1 	LOC_Os03g62110.3	"nicotinate phosphoribosyltransferase family domain containing protein, expressed"	Medtr5g016960.1	Nicotinate phosphoribosyltransferase related 	NA	NA	NA
PtpAffx.41144.1.S1_at	R	R	BU815058	BU815058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41180.1.S1_at	R	R	DN490746	DN490746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41363.1.S1_at	R	R	BI127483	BI127483	NA	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	NA	NA
PtpAffx.41372.1.A1_at	R	R	CV283880	CV283880	NA	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21760.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g32010.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g097740.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
PtpAffx.41391.1.S1_at	R	R	BI125159	BI125159	NA	NA	O95563	Brain protein 44	AT4G22310.1	Uncharacterised protein family (UPF0041) 	LOC_Os08g25590.3	"UPF0041 domain containing protein, putative, expressed"	Medtr2g029550.1	Protein of unknown function UPF0041 	NA	NA	NA
PtpAffx.41401.1.S1_at	R	R	CK104636	CK104636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41653.1.S1_at	R	R	DN503445	DN503445	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41805.1.S1_at	R	R	DN496688	DN496688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41810.1.S1_at	R	R	DN486928	DN486928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41811.1.A1_at	R	R	DN486924	DN486924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41885.1.S1_at	R	R	DN494079	DN494079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41888.1.S1_at	R	R	CK104311	CK104311	NA	NA	P29311	Protein BMH1	AT5G38480.1	general regulatory factor 3 	LOC_Os11g34450.1	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	NA	NA
PtpAffx.41901.1.S1_at	R	R	CK115521	CK115521	scaffold_3:10923060-10923109(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41912.1.A1_at	R	R	DN492823	DN492823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41914.1.A1_at	R	R	DN492790	DN492790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41925.1.S1_at	R	R	DN492471	DN492471	scaffold_5:338069-338455(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41962.1.A1_at	R	R	DN491558	DN491558	NA	NA	Q9FNZ2	Zinc finger CCCH domain-containing protein 48	AT5G51980.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g45480.4	"nucleic acid binding protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.41965.1.S1_at	R	R	CK113740	CK113740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.41981.1.A1_at	R	R	DN490753	DN490753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42017.1.A1_at	R	R	DN489185	DN489185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42028.1.A1_at	R	R	DN488447	DN488447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42039.1.A1_at	R	R	DN487942	DN487942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42041.1.A1_at	R	R	DN487817	DN487817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42049.1.S1_at	R	R	DN487510	DN487510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42052.1.A1_at	R	R	DN487351	DN487351	NA	NA	Q9ASS6	"Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic"	AT5G13120.1	cyclophilin 20-2 	LOC_Os05g01270.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr7g134340.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	NA	NA
PtpAffx.42068.1.A1_at	R	R	DN486905	DN486905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42076.1.S1_at	R	R	DN486756	DN486756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42086.1.A1_at	R	R	DN486270	DN486270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42114.1.A1_at	R	R	DN485249	DN485249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42128.1.S1_at	R	R	DN484821	DN484821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42135.1.S1_at	R	R	DN484389	DN484389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42157.1.A1_at	R	R	BP936970	BP936970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42267.1.A1_at	R	R	BP932723	BP932723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42278.1.A1_at	R	R	BP932259	BP932259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.42845.1.S1_at	R	R	DN486439	DN486439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4285.3.S1_at	R	R	CV257233	CV257233	scaffold_5:7196288-7196493(-) (11)	NA	Q84TE6	NAC domain-containing protein 21/22	AT1G56010.2	NAC domain containing protein 1 	LOC_Os06g46270.1	"no apical meristem protein, putative, expressed"	Medtr2g076740.1	No apical meristem (NAM) protein 	NA	NA	NA
PtpAffx.42961.1.S1_at	R	R	BU896344	BU896344	NA	NA	Q9FKG6	U-box domain-containing protein 52	AT5G61550.2	U-box domain-containing protein kinase family protein 	LOC_Os06g04880.1	"serine threonine kinase, putative, expressed"	Medtr3g009640.1	Protein kinase; U box 	NA	NA	NA
PtpAffx.43118.2.S1_at	R	R	DN486789	DN486789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43118.5.A1_at	R	R	DN486006	DN486006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43184.2.S1_at	R	R	CV278053	CV278053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43201.1.S1_at	R	R	CX167755	CX167755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43220.1.A1_at	R	R	CV283938	CV283938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43324.1.A1_at	R	R	CV276659	CV276659	NA	NA	Q04050	NADH-ubiquinone oxidoreductase chain 4	ATMG00580.1	NADH dehydrogenase subunit 4 	LOC_Os12g34094.1	"NADH-ubiquinone oxidoreductase chain 4, putative"	Medtr1g005140.1	NADH/Ubiquinone/plastoquinone (complex I) 	NA	NA	NA
PtpAffx.43327.1.A1_at	R	R	CV273078	CV273078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43329.1.A1_at	R	R	CV276399	CV276399	NA	NA	B5X8M4	Lys-63-specific deubiquitinase BRCC36	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43346.1.A1_at	R	R	CV275914	CV275914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43347.1.A1_at	R	R	CV275802	CV275802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43371.1.A1_at	R	R	CV274987	CV274987	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43379.1.A1_at	R	R	CV274710	CV274710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43384.1.A1_at	R	R	CV274364	CV274364	NA	NA	Q66PY1	"Signal peptide, CUB and EGF-like domain-containing protein 3"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43390.1.A1_at	R	R	CV274112	CV274112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43440.1.A1_at	R	R	CV271455	CV271455	NA	NA	P41127	60S ribosomal protein L13-1	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	AC235094_22.3	Ribosomal protein L13e AC235094.1 123915-120635 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.43478.1.A1_at	R	R	CV269868	CV269868	NA	NA	Q7Z7K6	Centromere protein V	AT5G16940.2	carbon-sulfur lyases 	LOC_Os09g23370.2	"proline-rich protein 6, putative, expressed"	Medtr3g087280.1	"Glutathione-dependent formaldehyde-activating, GFA "	NA	NA	NA
PtpAffx.43524.1.S1_at	R	R	CK106357	CK106357	NA	NA	Q94ID7	"Geranylgeranyl pyrophosphate synthase, chloroplastic"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43551.1.A1_at	R	R	CV267225	CV267225	scaffold_1:11390836-11391140(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43658.1.A1_at	R	R	CV263033	CV263033	scaffold_5:16561826-16562038(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43664.1.A1_at	R	R	CV262864	CV262864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43704.1.A1_at	R	R	CV260823	CV260823	scaffold_6:26553471-26553959(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g123950.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.43715.1.A1_at	R	R	CV260413	CV260413	scaffold_16:2642534-2642931(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43776.1.A1_at	R	R	CV258685	CV258685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43785.1.A1_at	R	R	CV258509	CV258509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43790.1.A1_at	R	R	CV258357	CV258357	scaffold_13:7120174-7120490(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43822.1.A1_at	R	R	CV257217	CV257217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43850.1.A1_at	R	R	CV256027	CV256027	scaffold_11:5638903-5639038(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43859.1.A1_at	R	R	CV255825	CV255825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.43957.1.A1_at	R	R	CV251531	CV251531	NA	NA	Q032Z6	Protein translocase subunit secA	AT4G01800.1	Albino or Glassy Yellow 1 	LOC_Os01g21820.1	"preprotein translocase subunit secA, chloroplast precursor, putative, expressed"	Medtr1g105810.1	SecA protein 	NA	NA	NA
PtpAffx.44202.1.A1_at	R	R	CV241343	CV241343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44373.1.A1_at	R	R	CV234676	CV234676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44536.1.A1_at	R	R	CV228578	CV228578	scaffold_2:3311244-3312664(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4465.2.S1_at	R	R	CA929665	CA929665	NA	NA	Q43432	V-type proton ATPase subunit B 1	AT1G76030.1	"ATPase, V1 complex, subunit B protein "	LOC_Os01g51380.2	"ATP synthase, putative, expressed"	Medtr7g092560.1	ATPase FliI/YscN 	NA	NA	NA
PtpAffx.4470.9.S1_at	R	R	CV262608	CV262608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4473.1.A1_at	R	R	CV244995	CV244995	scaffold_2:23248827-23248861(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4473.4.S1_a_at	R	R	BU888130	BU888130	scaffold_2:23248409-23248693(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4473.4.S1_at	R	R	BU888130	BU888130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4473.5.A1_at	R	R	DN488460	DN488460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.44980.1.S1_at	R	R	AJ769365	AJ769365	NA	NA	A4GYR4	"NAD(P)H-quinone oxidoreductase subunit K, chloroplastic"	ATCG00430.1	photosystem II reaction center protein G 	LOC_Os01g58022.1	"NADPH-dependent oxidoreductase, putative"	Medtr7g021790.1	"NADH dehydrogenase (ubiquinone), 20 kDa subunit "	NA	NA	NA
PtpAffx.4534.1.S1_at	R	R	CV255481	CV255481	NA	NA	NA	NA	AT5G23050.1	acyl-activating enzyme 17 	LOC_Os09g21230.1	"AMP-binding enzyme, putative, expressed"	Medtr4g134030.1	"AMP-dependent synthetase and ligase; Legume lectin, alpha "	NA	NA	NA
PtpAffx.454.30.S1_at	R	R	CA822278	CA822278	NA	NA	P15953	Cytochrome c oxidase subunit 3	ATMG00730.1	cytochrome c oxidase subunit 3 	NA	NA	Medtr1g005240.1	"Cytochrome c oxidase, subunit III; H+-transporting two-sector ATPase, A subunit "	NA	NA	NA
PtpAffx.45442.1.S1_at	R	R	CK109392	CK109392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45541.3.A1_at	R	R	BP932290	BP932290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45544.1.S1_at	R	R	BU819696	BU819696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45565.1.S1_at	R	R	BI126193	BI126193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45591.1.S1_at	R	R	CK094218	CK094218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45694.1.S1_at	R	R	CF232798	CF232798	NA	NA	Q6NLB1	F-box protein At2g26850	AT2G26850.1	F-box family protein 	LOC_Os01g17390.1	"OsFBX5 - F-box domain containing protein, expressed"	Medtr5g096190.1	Cyclin-like F-box 	NA	NA	NA
PtpAffx.45729.2.S1_at	R	R	BU822004	BU822004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45752.1.S1_at	R	R	CK095989	CK095989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45756.1.A1_at	R	R	CK095680	CK095680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45771.1.A1_at	R	R	CK095273	CK095273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45775.1.S1_at	R	R	CK105144	CK105144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45776.1.S1_at	R	R	BI126196	BI126196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45784.1.A1_at	R	R	CK094760	CK094760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45787.1.S1_at	R	R	CK104650	CK104650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45794.1.S1_at	R	R	CK104491	CK104491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45799.1.S1_at	R	R	CK094406	CK094406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45802.1.A1_at	R	R	CK094276	CK094276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45808.1.S1_at	R	R	BI123075	BI123075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45814.1.A1_at	R	R	CK093944	CK093944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45815.1.S1_at	R	R	CK093858	CK093858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4582.1.S1_at	R	R	DN495939	DN495939	scaffold_17:3103982-3110646(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45823.1.A1_at	R	R	CK093080	CK093080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45824.1.A1_at	R	R	CK093064	CK093064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45825.1.A1_at	R	R	CK092955	CK092955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45826.1.A1_at	R	R	CK092922	CK092922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.45838.1.A1_at	R	R	CK092077	CK092077	NA	NA	Q9LPD2	Flap endonuclease GEN-like 1	AT1G01880.2	5'-3' exonuclease family protein 	NA	NA	Medtr7g083910.1	"Helix-hairpin-helix motif, class 2 "	NA	NA	NA
PtpAffx.46284.1.S1_at	R	R	CA821046	CA821046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.46359.1.S1_at	R	R	AJ774114	AJ774114	NA	NA	Q55535	Putative low molecular weight protein-tyrosine-phosphatase slr0328	AT3G44620.1	protein tyrosine phosphatases;protein tyrosine phosphatases 	LOC_Os08g44320.1	"low molecular weight protein-tyrosine-phosphatase slr0328, putative, expressed"	Medtr4g073090.1	Low molecular weight phosphotyrosine protein phosphatase 	NA	NA	NA
PtpAffx.46477.1.A1_at	R	R	BP932661	BP932661	NA	NA	Q7ZUC7	Prostaglandin E synthase 2	AT5G42150.1	Glutathione S-transferase family protein 	LOC_Os04g17050.1	"glutaredoxin family protein, expressed"	Medtr3g156560.1	Intracellular chloride channel; Thioredoxin-like fold 	NA	NA	NA
PtpAffx.4650.3.A1_at	R	R	CN522663	CN522663	NA	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	NA	NA	NA
PtpAffx.4653.1.A1_at	R	R	CV282471	CV282471	NA	NA	Q96386	Metallothionein-like protein type 3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.46545.1.S1_at	R	R	DN492979	DN492979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.46589.1.S1_at	R	R	DN496605	DN496605	scaffold_5:112192-112742(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.46613.2.A1_at	R	R	CK087596	CK087596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4692.1.S1_at	R	R	DN496215	DN496215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.46975.1.S1_at	R	R	BU872438	BU872438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4702.1.A1_s_at	R	R	CV279499	CV279499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4710.1.A1_at	R	R	CV278818	CV278818	NA	NA	P93394	Uracil phosphoribosyltransferase	AT3G53900.2	uracil phosphoribosyltransferase 	LOC_Os05g38170.1	"phosphoribosyl transferase, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.47142.1.S1_at	R	R	DN499684	DN499684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47214.1.S1_at	R	R	CK093895	CK093895	NA	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.6	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	NA	NA	NA
PtpAffx.47292.1.S1_at	R	R	BU823210	BU823210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47303.1.S1_at	R	R	BU822708	BU822708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47424.1.A1_at	R	R	CV273098	CV273098	NA	NA	NA	NA	AT4G08450.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g021150.1	Disease resistance protein 	NA	NA	NA
PtpAffx.4745.1.A1_at	R	R	CV276393	CV276393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47476.1.S1_at	R	R	DN490705	DN490705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4763.1.A1_at	R	R	CV275633	CV275633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47674.1.S1_at	R	R	CK095125	CK095125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4769.1.A1_at	R	R	CV275350	CV275350	scaffold_1:12580888-12581214(+) (11)//scaffold_547:3180-3506(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47702.1.S1_at	R	R	CK094636	CK094636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4771.1.A1_at	R	R	CV275330	CV275330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47728.1.S1_at	R	R	BI125402	BI125402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4774.1.A1_at	R	R	CV275277	CV275277	NA	NA	Q5RFD3	Proteasome activator complex subunit 3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47744.2.S1_at	R	R	CK093950	CK093950	NA	NA	NA	NA	AT4G19950.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 338 Blast hits to 330 proteins in 72 species: Archae - 2; Bacteria - 94; Metazoa - 7; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os08g01590.2	expressed protein	Medtr4g165710.1	hypothetical protein 	NA	NA	NA
PtpAffx.4787.1.A1_at	R	R	CV274951	CV274951	NA	NA	P46237	Endoglucanase type C	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4796.1.A1_at	R	R	CV274524	CV274524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.47963.1.S1_at	R	R	CK115551	CK115551	NA	NA	P40525	60S ribosomal protein L34-B	AT1G69620.1	ribosomal protein L34 	LOC_Os09g24690.1	"60S ribosomal protein L34, putative, expressed"	Medtr5g043970.1	Ribosomal protein L34e 	NA	NA	NA
PtpAffx.4797.1.A1_at	R	R	CV274416	CV274416	NA	NA	Q9SSK7	MLP-like protein 34	AT5G28010.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr7g135870.1	Bet v I allergen 	NA	NA	NA
PtpAffx.4798.1.A1_at	R	R	CV274409	CV274409	NA	NA	O76190	60S ribosomal protein L5	AT3G25520.1	ribosomal protein L5 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	NA	NA	NA
PtpAffx.4799.1.A1_at	R	R	CV274404	CV274404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4803.1.A1_at	R	R	CV274344	CV274344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48035.1.S1_at	R	R	DN500474	DN500474	NA	NA	Q8TDG4	Helicase POLQ-like	AT4G32700.2	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding 	LOC_Os12g19370.1	"DNA polymerase I family protein, expressed"	Medtr1g009720.1	DNA-directed DNA polymerase; ATP-requiring DNA helicase RecQ; 	NA	NA	NA
PtpAffx.4805.1.A1_at	R	R	CV274272	CV274272	NA	NA	Q9VS34	60S ribosomal protein L18	AT5G27850.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os07g47780.2	"60S ribosomal protein L18-3, putative, expressed"	Medtr1g099960.1	Ribosomal protein L18e 	NA	NA	NA
PtpAffx.48075.1.S1_at	R	R	BU863262	BU863262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48078.1.S1_at	R	R	DN488588	DN488588	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4809.1.A1_at	R	R	CV274126	CV274126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48107.1.S1_at	R	R	DN486932	DN486932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48132.1.S1_at	R	R	DN486436	DN486436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48141.1.S1_at	R	R	DN495701	DN495701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4815.1.A1_at	R	R	CV274037	CV274037	NA	NA	Q8LD49	"Thioredoxin X, chloroplastic"	AT1G50320.1	thioredoxin X 	LOC_Os04g57930.1	"thioredoxin, putative, expressed"	Medtr1g143570.1	Thioredoxin; Thioredoxin fold; 	NA	NA	NA
PtpAffx.48156.1.S1_at	R	R	CV261539	CV261539	scaffold_1:10758244-10758714(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48188.1.A1_at	R	R	DN493151	DN493151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4819.1.A1_at	R	R	CV273843	CV273843	NA	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g51390.2	"aldose 1-epimerase, putative, expressed"	Medtr4g023350.1	Galactose mutarotase-like 	NA	NA	NA
PtpAffx.4827.1.A1_at	R	R	CV273066	CV273066	NA	NA	Q96BM9	ADP-ribosylation factor-like protein 8A	AT3G49870.1	ADP-ribosylation factor-like A1C 	LOC_Os03g10370.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g015500.1	"Ras small GTPase, Rab type "	NA	NA	NA
PtpAffx.48296.1.S1_at	R	R	DN498767	DN498767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4830.1.A1_at	R	R	CV272940	CV272940	NA	NA	Q7KQL8	Thioredoxin	AT3G17880.2	tetraticopeptide domain-containing thioredoxin 	LOC_Os07g09310.1	"thioredoxin, putative, expressed"	Medtr5g038960.1	Thioredoxin domain 2; Thioredoxin fold; 	NA	NA	NA
PtpAffx.48308.1.A1_at	R	R	DN488462	DN488462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48310.3.A1_at	R	R	CK090703	CK090703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48329.2.S1_at	R	R	BU872043	BU872043	NA	NA	P83304	Mannose/glucose-specific lectin (Fragment)	AT1G19715.3	Mannose-binding lectin superfamily protein 	LOC_Os12g09700.1	"Jacalin-like lectin domain containing protein, putative, expressed"	Medtr5g079480.1	Jacalin-related lectin 	NA	NA	NA
PtpAffx.48332.1.S1_at	R	R	DN497062	DN497062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48339.1.S1_at	R	R	DN496697	DN496697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48342.1.A1_at	R	R	DN487014	DN487014	NA	NA	NA	NA	AT5G20740.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	NA	NA	Medtr8g132880.1	Pectinesterase inhibitor 	NA	NA	NA
PtpAffx.48364.1.S1_at	R	R	DN486423	DN486423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48367.1.S1_at	R	R	BU888923	BU888923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48368.3.A1_at	R	R	DN486273	DN486273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48376.1.A1_at	R	R	DN485808	DN485808	NA	NA	NA	NA	AT4G04320.2	malonyl-CoA decarboxylase family protein 	LOC_Os09g23070.2	"malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.48404.1.A1_at	R	R	DN484527	DN484527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48411.1.A1_at	R	R	DN484400	DN484400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48485.1.A1_at	R	R	BP930905	BP930905	scaffold_9:11597608-11598173(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.48609.1.A1_at	R	R	BP930335	BP930335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49031.1.A1_at	R	R	CX185862	CX185862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.4921.2.S1_at	R	R	CF227326	CF227326	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g024570.1	Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.4949.1.A1_at	R	R	CV268133	CV268133	NA	NA	NA	NA	AT1G07030.1	Mitochondrial substrate carrier family protein 	NA	NA	Medtr5g081260.1	Mitochondrial substrate carrier 	NA	NA	NA
PtpAffx.49535.1.A1_at	R	R	CV281624	CV281624	NA	NA	B9HQZ6	"Probable alanyl-tRNA synthetase, chloroplastic"	AT5G22800.1	"Alanyl-tRNA synthetase, class IIc "	LOC_Os06g13660.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr3g163940.1	"Alanyl-tRNA synthetase, class IIc "	NA	NA	NA
PtpAffx.49555.1.A1_at	R	R	CV280631	CV280631	NA	NA	Q8WNV7	Dehydrogenase/reductase SDR family member 4	AT4G05530.1	indole-3-butyric acid response 1 	LOC_Os09g04730.1	"dehydrogenase/reductase SDR family member 2, putative, expressed"	Medtr8g147520.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.49570.1.A1_at	R	R	CV279990	CV279990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49571.1.A1_at	R	R	CV279953	CV279953	NA	NA	Q8LBB2	SNF1-related protein kinase regulatory subunit gamma 1	AT3G48530.1	SNF1-related protein kinase regulatory subunit gamma 1 	LOC_Os04g31340.1	"CBS domain containing membrane protein, putative, expressed"	Medtr8g109260.1	CBS 	NA	NA	NA
PtpAffx.49590.1.A1_at	R	R	CV279056	CV279056	NA	NA	P35134	Ubiquitin-conjugating enzyme E2 11	AT3G08690.2	ubiquitin-conjugating enzyme 11 	LOC_Os04g57220.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g098530.1	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.4961.1.A1_at	R	R	CV267652	CV267652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49627.1.A1_at	R	R	CV277188	CV277188	NA	NA	Q9SMJ3	"Zeta-carotene desaturase, chloroplastic/chromoplastic"	NA	NA	NA	NA	Medtr1g096350.1	Amine oxidase 	NA	NA	NA
PtpAffx.49651.1.A1_at	R	R	CV275935	CV275935	NA	NA	P67882	Cytochrome c	AT1G22840.1	CYTOCHROME C-1 	LOC_Os05g34770.1	"cytochrome c, putative, expressed"	Medtr5g008520.1	"Cytochrome c, monohaem "	NA	NA	NA
PtpAffx.49663.1.A1_at	R	R	CV275685	CV275685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49686.1.S1_at	R	R	CV274956	CV274956	NA	NA	Q93X17	Snakin-2	AT5G14920.1	Gibberellin-regulated family protein 	LOC_Os04g39110.2	"GASR4 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr8g073960.1	Gibberellin regulated protein 	NA	NA	NA
PtpAffx.49689.1.A1_at	R	R	CV274866	CV274866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49709.1.A1_at	R	R	CV274000	CV274000	NA	NA	Q7MF12	Choline dehydrogenase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49713.1.A1_at	R	R	CV273728	CV273728	NA	NA	Q07460	Eukaryotic translation initiation factor 5A-2	AT1G69410.1	eukaryotic elongation factor 5A-3 	LOC_Os07g02210.2	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	NA	NA	NA
PtpAffx.49728.1.A1_at	R	R	CV273249	CV273249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49774.1.A1_at	R	R	CV271521	CV271521	scaffold_13:3850875-3851159(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.49929.1.A1_at	R	R	CV265686	CV265686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5001.1.A1_at	R	R	CV266036	CV266036	scaffold_10:20018783-20019329(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50019.1.A1_at	R	R	CV262087	CV262087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50046.1.A1_at	R	R	CV261156	CV261156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5010.1.A1_at	R	R	CV265654	CV265654	scaffold_1:15375833-15376337(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50116.1.A1_at	R	R	CV258312	CV258312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50123.1.S1_at	R	R	CV258097	CV258097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50157.1.A1_at	R	R	CV256984	CV256984	scaffold_18:11369237-11369377(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50177.1.A1_at	R	R	CV256162	CV256162	scaffold_18:6466400-6466919(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50202.1.A1_at	R	R	CV255052	CV255052	scaffold_6:24451291-24451384(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50231.1.A1_at	R	R	CV253757	CV253757	scaffold_10:12498599-12498706(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50259.1.A1_at	R	R	CV252683	CV252683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50353.1.A1_at	R	R	CV247944	CV247944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5046.1.A1_at	R	R	CV263826	CV263826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50518.1.A1_at	R	R	CV242487	CV242487	NA	NA	B0FWD8	NADH-ubiquinone oxidoreductase chain 1	ATMG01275.1	NADH dehydrogenase 1A 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50528.1.A1_at	R	R	CV242089	CV242089	NA	NA	NA	NA	AT1G34350.1	unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). 	LOC_Os08g01350.1	"transmembrane protein 18, putative, expressed"	Medtr1g100500.1	"Transmembrane protein 18, related "	NA	NA	NA
PtpAffx.50632.1.A1_at	R	R	CV238824	CV238824	NA	NA	P37469	Replicative DNA helicase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50648.1.A1_at	R	R	CV238208	CV238208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5068.1.A1_at	R	R	CV262924	CV262924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5078.2.A1_at	R	R	CV271616	CV271616	NA	NA	NA	NA	AT4G16380.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr8g148830.1	Heavy metal transport/detoxification protein 	NA	NA	NA
PtpAffx.5078.5.A1_at	R	R	CK114960	CK114960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5078.7.A1_at	R	R	CV275265	CV275265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.50821.1.A1_at	R	R	CV231185	CV231185	scaffold_1565:1544-1855(+) (11)//scaffold_7:1853542-1853841(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5088.1.A1_at	R	R	CV262110	CV262110	scaffold_3:10817997-10819111(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.51027.1.S1_at	R	R	CK095233	CK095233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5104.1.A1_at	R	R	CV261488	CV261488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.51096.1.S1_at	R	R	CK111630	CK111630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5132.2.A1_at	R	R	CV260456	CV260456	NA	NA	Q9ASS6	"Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic"	AT1G36050.2	Endoplasmic reticulum vesicle transporter protein 	LOC_Os05g41120.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.2	Protein of unknown function DUF1692 	NA	NA	NA
PtpAffx.5141.1.A1_at	R	R	CV260177	CV260177	scaffold_10:11320551-11320847(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.51801.1.S1_at	R	R	CK113617	CK113617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5192.1.A1_at	R	R	CV257983	CV257983	scaffold_5:5770005-5770124(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.51965.1.S1_at	R	R	CK105054	CK105054	NA	NA	O74499	U6 snRNA-associated Sm-like protein LSm7	AT2G03870.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g08040.1	"LSM domain containing protein, expressed"	Medtr7g070870.1	"Like-Sm ribonucleoprotein-related, core "	NA	NA	NA
PtpAffx.51966.1.S1_at	R	R	CK095103	CK095103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.51968.1.S1_at	R	R	CK094952	CK094952	NA	NA	P0C2I0	60S ribosomal protein L20	AT1G29970.2	60S ribosomal protein L18A-1 	LOC_Os01g54870.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	NA	NA	NA
PtpAffx.51969.1.A1_at	R	R	CK094912	CK094912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.51976.1.S1_at	R	R	CK104625	CK104625	NA	NA	Q10192	60S ribosomal protein L18-A	AT3G05590.1	ribosomal protein L18 	LOC_Os05g06310.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	NA	NA	NA
PtpAffx.5198.2.S1_at	R	R	CV257638	CV257638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.51993.1.S1_at	R	R	CK103982	CK103982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52060.2.S1_at	R	R	CV258816	CV258816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5209.1.A1_at	R	R	CV257332	CV257332	scaffold_1:2145489-2145701(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52103.1.A1_at	R	R	CK097725	CK097725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5212.1.S1_at	R	R	CX173907	CX173907	scaffold_2:5751578-5751738(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52121.1.S1_at	R	R	CF235981	CF235981	NA	NA	NA	NA	AT1G16630.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16270.1); Has 10587 Blast hits to 5736 proteins in 617 species: Archae - 88; Bacteria - 963; Metazoa - 3686; Fungi - 820; Plants - 541; Viruses - 438; Other Eukaryotes - 4051 (source: NCBI BLink). 	NA	NA	Medtr8g146840.1	hypothetical protein 	NA	NA	NA
PtpAffx.52124.1.S1_at	R	R	BU822378	BU822378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52126.1.A1_at	R	R	CV267603	CV267603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52131.1.A1_at	R	R	CK096761	CK096761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5217.1.A1_at	R	R	CV257053	CV257053	scaffold_14:9125948-9126226(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52175.1.A1_at	R	R	CK095438	CK095438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5218.1.A1_at	R	R	CV257038	CV257038	scaffold_1:25103123-25103450(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52181.1.A1_at	R	R	CK095242	CK095242	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52182.1.A1_at	R	R	CK095232	CK095232	NA	NA	Q6DH23	Vacuolar protein sorting-associated protein 26B-like	AT4G27690.2	vacuolar protein sorting 26B 	LOC_Os11g41130.2	"vacuolar protein sorting-associated protein 26, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.52185.1.A1_at	R	R	CK095119	CK095119	NA	NA	Q9SEI3	26S protease regulatory subunit 10B homolog A	AT5G43010.1	regulatory particle triple-A ATPase 4A 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	NA	NA
PtpAffx.52186.1.S1_at	R	R	CK105025	CK105025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52196.1.A1_at	R	R	CK094820	CK094820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52197.1.A1_s_at	R	R	CK094747	CK094747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52204.1.S1_at	R	R	CK104418	CK104418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52208.4.A1_at	R	R	CK094315	CK094315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52209.1.A1_at	R	R	CK094312	CK094312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52216.1.A1_at	R	R	CK094147	CK094147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52218.1.S1_at	R	R	BI122727	BI122727	NA	NA	P0C224	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	NA	NA	NA
PtpAffx.52220.1.S1_at	R	R	CK104024	CK104024	NA	NA	Q8N6R0	Methyltransferase-like protein 13	AT4G34360.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os11g35340.1	"methyltransferase, putative, expressed"	Medtr4g089760.1	"Putative methyltransferase KIAA0859 homolog, "	NA	NA	NA
PtpAffx.52223.1.S1_at	R	R	CK103964	CK103964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52240.1.A1_at	R	R	CK092196	CK092196	NA	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT3G04010.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os06g39060.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr6g030630.1	"Glycoside hydrolase, family 17; X8 "	NA	NA	NA
PtpAffx.52271.1.A1_at	R	R	CK091244	CK091244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52291.1.A1_at	R	R	CK090724	CK090724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52312.1.A1_at	R	R	CK089910	CK089910	NA	NA	NA	NA	NA	NA	NA	NA	Medtr1g005170.1	hypothetical protein 	NA	NA	NA
PtpAffx.52333.1.A1_at	R	R	CK088019	CK088019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52345.1.A1_at	R	R	CK087233	CK087233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5253.1.A1_at	R	R	CV255813	CV255813	scaffold_6:6293932-6294116(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5263.1.A1_at	R	R	CV255483	CV255483	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g094830.1	"Helicase, C-terminal; ; "	NA	NA	NA
PtpAffx.5270.2.S1_s_at	R	R	CV274831	CV274831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52917.1.S1_at	R	R	CF235303	CF235303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.52967.1.A1_at	R	R	DN493295	DN493295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5302.1.A1_at	R	R	CV253901	CV253901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.53050.1.S1_at	R	R	BU893023	BU893023	scaffold_8:6535588-6535657(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5326.6.S1_at	R	R	CK110574	CK110574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5326.7.S1_at	R	R	CK095802	CK095802	NA	NA	P51104	Dihydroflavonol-4-reductase	AT1G80820.1	cinnamoyl coa reductase 	LOC_Os09g25150.1	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	NA	NA	NA
PtpAffx.5326.8.A1_at	R	R	CV260116	CV260116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.53442.1.S1_at	R	R	BU871053	BU871053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.53466.1.S1_at	R	R	DN487053	DN487053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5367.3.A1_at	R	R	CV232348	CV232348	scaffold_16:11415623-11416129(+) (10)	NA	NA	NA	AT4G08685.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.53713.1.S1_at	R	R	CK107139	CK107139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.53822.1.S1_at	R	R	CV270700	CV270700	NA	NA	Q9C5J9	Uncharacterized GTP-binding protein At5g64813	AT5G64813.1	Ras-related small GTP-binding family protein 	LOC_Os10g04580.1	"ras-related protein, putative, expressed"	Medtr4g140980.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	NA	NA	NA
PtpAffx.53848.1.S1_at	R	R	BU816379	BU816379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54099.1.S1_at	R	R	CK095411	CK095411	NA	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	NA	NA	NA
PtpAffx.54121.1.S1_at	R	R	BI125510	BI125510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54131.1.S1_at	R	R	CK094774	CK094774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5419.1.A1_at	R	R	CV250647	CV250647	scaffold_2:4922761-4923031(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54411.1.A1_at	R	R	DN493392	DN493392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54413.1.A1_at	R	R	DN493381	DN493381	NA	NA	NA	NA	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28760.1	"CXE carboxylesterase, putative"	Medtr4g129350.1	"CXE carboxylesterase, putative "	NA	NA	NA
PtpAffx.54537.1.S1_at	R	R	DN488523	DN488523	scaffold_8:5329139-5329295(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54543.1.S1_at	R	R	DN488181	DN488181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54553.1.S1_at	R	R	CX171131	CX171131	scaffold_8:13027681-13028224(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54574.1.S1_at	R	R	DN487141	DN487141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54575.1.S1_at	R	R	DN487128	DN487128	NA	NA	Q4HZB8	FK506-binding protein 1	AT4G25340.1	FK506 BINDING PROTEIN 53 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	NA	NA	NA
PtpAffx.54592.1.S1_at	R	R	BU891982	BU891982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54668.1.S1_at	R	R	DN503338	DN503338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54736.1.A1_at	R	R	DN490557	DN490557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54738.1.A1_at	R	R	DN490443	DN490443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54742.1.A1_at	R	R	DN490252	DN490252	NA	NA	Q61074	Protein phosphatase 1G	AT2G25070.1	Protein phosphatase 2C family protein 	LOC_Os02g08364.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.2	Protein phosphatase 2C; 	NA	NA	NA
PtpAffx.54763.1.A1_at	R	R	DN488821	DN488821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54764.1.A1_at	R	R	DN488814	DN488814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54779.1.S1_at	R	R	DN488063	DN488063	scaffold_6:4636657-4637124(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54788.1.A1_at	R	R	DN487787	DN487787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54790.1.S1_at	R	R	BU874943	BU874943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54802.1.S1_at	R	R	DN497129	DN497129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54808.1.A1_at	R	R	DN487191	DN487191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54822.1.S1_at	R	R	DN486852	DN486852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54834.1.S1_at	R	R	DN496144	DN496144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54866.1.S1_at	R	R	CX659175	CX659175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54880.1.A1_at	R	R	DN484635	DN484635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54883.1.S1_at	R	R	DN493962	DN493962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.54945.1.A1_at	R	R	BP935302	BP935302	NA	NA	NA	NA	AT3G04220.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr8g024480.1	Disease resistance protein 	NA	NA	NA
PtpAffx.55008.1.A1_at	R	R	BP932928	BP932928	scaffold_820:7029-7416(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr7g123950.1	Retrotransposon gag protein 	NA	NA	NA
PtpAffx.5523.1.A1_at	R	R	CV245058	CV245058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5526.1.A1_at	R	R	CV244929	CV244929	scaffold_1:16939223-16939383(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.55694.1.S1_at	R	R	CV229821	CV229821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5580.3.S1_a_at	R	R	CX658777	CX658777	scaffold_8:1996839-1997057(-) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G04250.2	Cysteine proteinases superfamily protein 	LOC_Os02g57410.7	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g120470.1	"Ovarian tumour, otubain "	NA	NA	NA
PtpAffx.5583.1.A1_at	R	R	CV243133	CV243133	NA	NA	P58311	Photosystem I P700 chlorophyll a apoprotein A1	ATCG00350.1	"Photosystem I, PsaA/PsaB protein "	LOC_Os10g38229.1	"photosystem I P700 chlorophyll a apoprotein A1, putative"	Medtr3g043620.1	Photosystem I psaA and psaB 	NA	NA	NA
PtpAffx.56064.1.A1_at	R	R	CV280271	CV280271	NA	NA	Q8SAG3	Actin-depolymerizing factor	AT2G31200.1	actin depolymerizing factor 6 	LOC_Os12g43340.1	"actin-depolymerizing factor, putative, expressed"	AC233662_56.1	"Actin-binding, cofilin/tropomyosin type AC233662.1 257418-259371 F EGN_Mt090430 200"	NA	NA	NA
PtpAffx.56071.1.A1_at	R	R	CV280005	CV280005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56113.1.A1_at	R	R	CV277642	CV277642	NA	NA	O04266	GTP-binding protein SAR1A	AT3G62560.1	Ras-related small GTP-binding family protein 	LOC_Os12g37360.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	NA	NA	NA
PtpAffx.56122.1.A1_at	R	R	CV277204	CV277204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56139.2.A1_at	R	R	CV276408	CV276408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56156.1.A1_at	R	R	CV275863	CV275863	scaffold_3:10066951-10067285(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56164.1.A1_at	R	R	CV275511	CV275511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56173.1.A1_at	R	R	CV275225	CV275225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56185.1.A1_at	R	R	CV274882	CV274882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56198.1.A1_at	R	R	CV274180	CV274180	NA	NA	O13870	General negative regulator of transcription subunit 3	AT5G18230.2	transcription regulator NOT2/NOT3/NOT5 family protein 	LOC_Os03g44900.2	"CCR4-NOT transcription factor, putative, expressed"	Medtr7g100260.1	"Not CCR4-Not complex component, N-terminal "	NA	NA	NA
PtpAffx.56216.1.A1_at	R	R	CV273409	CV273409	NA	NA	Q54DH7	DNA-directed RNA polymerase II subunit rpb3	AT2G15430.1	DNA-directed RNA polymerase family protein 	LOC_Os09g02284.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr4g114420.1	"RNA polymerase, dimerisation "	NA	NA	NA
PtpAffx.5629.1.A1_at	R	R	CV241420	CV241420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56302.1.A1_at	R	R	CV270261	CV270261	NA	NA	Q9SA78	Coatomer subunit epsilon-1	AT1G30630.1	Coatomer epsilon subunit 	LOC_Os04g52270.2	"coatomer subunit epsilon, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.56310.1.A1_at	R	R	CV270016	CV270016	scaffold_17:7476095-7476401(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56331.1.A1_at	R	R	CV269123	CV269123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56598.1.A1_at	R	R	CV258919	CV258919	NA	NA	P12062	"Chlorophyll a-b binding protein 37, chloroplastic"	AT3G27690.1	photosystem II light harvesting complex gene 2.3 	LOC_Os03g39610.2	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g104980.1	Chlorophyll A-B binding protein 	NA	NA	NA
PtpAffx.56599.1.A1_at	R	R	CV258791	CV258791	NA	NA	NA	NA	AT4G38760.1	Protein of unknown function (DUF3414) 	LOC_Os10g06610.1	expressed protein	Medtr4g100780.1	hypothetical protein 	NA	NA	NA
PtpAffx.56710.1.A1_at	R	R	CV255071	CV255071	scaffold_17:541655-542202(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56725.1.A1_at	R	R	CV254564	CV254564	scaffold_1:10454229-10454434(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56732.1.A1_at	R	R	CN550530	CN550530	NA	NA	NA	NA	AT1G10290.1	dynamin-like protein 6 	NA	NA	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	NA	NA
PtpAffx.5682.2.A1_at	R	R	CV259340	CV259340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5688.3.S1_at	R	R	CK096990	CK096990	NA	NA	NA	NA	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	NA	NA	Medtr8g138640.1	"Kinesin, motor region "	NA	NA	NA
PtpAffx.56881.1.A1_at	R	R	CV247757	CV247757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56903.1.A1_at	R	R	CV246647	CV246647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.56978.1.A1_at	R	R	CV243451	CV243451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.57145.1.A1_at	R	R	CV237128	CV237128	NA	NA	NA	NA	AT3G11800.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 74 Blast hits to 73 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g57320.1	"expp1 protein precursor, putative, expressed"	Medtr1g149660.1	"expp1 protein precursor, putative "	NA	NA	NA
PtpAffx.57240.1.A1_at	R	R	CV233785	CV233785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5743.1.A1_at	R	R	CV236133	CV236133	scaffold_6:17211173-17211210(-) (10)//scaffold_6:17231614-17231653(-) (11)//scaffold_6:17250044-17250083(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58328.1.S1_at	R	R	CK094773	CK094773	NA	NA	P53875	"54S ribosomal protein L19, mitochondrial"	AT4G35490.1	mitochondrial ribosomal protein L11 	LOC_Os10g32870.1	"L11 domain containing ribosomal protein, putative, expressed"	Medtr3g109450.1	Ribosomal protein L11 	NA	NA	NA
PtpAffx.58330.1.S1_at	R	R	CK093016	CK093016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58336.1.S1_at	R	R	CK093850	CK093850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58451.1.S1_at	R	R	BI125796	BI125796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58453.1.S1_at	R	R	CK104931	CK104931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58466.1.S1_at	R	R	CK094596	CK094596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58618.1.A1_at	R	R	CK097214	CK097214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58624.1.A1_at	R	R	CK097019	CK097019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58664.2.S1_at	R	R	CK095817	CK095817	NA	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.2	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	NA	NA	NA
PtpAffx.58683.1.S1_at	R	R	BI126094	BI126094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58686.1.A1_at	R	R	CK095035	CK095035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58687.1.A1_at	R	R	CK095025	CK095025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58691.1.A1_at	R	R	CK094784	CK094784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58692.1.A1_at	R	R	CK094700	CK094700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58693.1.A1_at	R	R	CK094699	CK094699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58694.2.S1_a_at	R	R	CK094658	CK094658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58699.1.A1_at	R	R	CK094569	CK094569	NA	NA	NA	NA	AT3G26580.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g31490.1	expressed protein	Medtr8g081910.1	"Tetratricopeptide TPR_2 repeat protein, related "	NA	NA	NA
PtpAffx.58700.1.S1_at	R	R	BI124157	BI124157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58705.1.A1_at	R	R	CK094353	CK094353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58706.1.S1_at	R	R	CK104302	CK104302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58712.1.S1_at	R	R	CK104163	CK104163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58715.1.A1_at	R	R	CK094181	CK094181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58728.1.A1_at	R	R	CK093381	CK093381	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g127920.1	"Carbohydrate kinase, FGGY "	NA	NA	NA
PtpAffx.58735.1.A1_at	R	R	CK092850	CK092850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58737.1.A1_at	R	R	CK092666	CK092666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58807.1.A1_at	R	R	CK090336	CK090336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58808.1.A1_at	R	R	CK090263	CK090263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58817.1.A1_at	R	R	CK089819	CK089819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58823.1.A1_at	R	R	CK089491	CK089491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58824.1.A1_at	R	R	CK089459	CK089459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58825.1.A1_at	R	R	CK089327	CK089327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58826.1.A1_at	R	R	CK089170	CK089170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58838.1.A1_at	R	R	CK087822	CK087822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.58910.1.A1_at	R	R	CV256061	CV256061	NA	NA	Q9FRR1	PRA1 family protein E	AT1G08770.1	prenylated RAB acceptor 1.E 	LOC_Os03g53070.1	"prenylated rab acceptor, putative, expressed"	Medtr2g121490.1	Prenylated rab acceptor PRA1 	NA	NA	NA
PtpAffx.59002.1.S1_at	R	R	CV233920	CV233920	NA	NA	Q43314	Glutamate dehydrogenase 1	AT5G18170.1	glutamate dehydrogenase 1 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	NA	NA	NA
PtpAffx.59129.2.S1_s_at	R	R	CK318623	CK318623	NA	NA	P58728	Uncharacterized protein At4g14342	AT4G14342.1	Splicing factor 3B subunit 5/RDS3 complex subunit 10 	LOC_Os08g34480.1	"splicing factor 3B subunit 5, putative, expressed"	Medtr8g074010.1	Splicing factor 3B subunit 10 	NA	NA	NA
PtpAffx.59637.1.S1_at	R	R	BU888727	BU888727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.59644.1.S1_at	R	R	BU888240	BU888240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.59784.1.S1_at	R	R	BU880271	BU880271	scaffold_21:325445-325708(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.5988.1.S1_at	R	R	CV226171	CV226171	scaffold_8:2392948-2393421(-) (11)	NA	O24534	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08060.1	"elongation factor Tu, putative, expressed"	Medtr1g016600.1	"Translation elongation factor, GTP-binding "	NA	NA	NA
PtpAffx.59943.1.S1_at	R	R	DN487540	DN487540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60041.1.A1_at	R	R	DN488940	DN488940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60156.1.S1_at	R	R	DN498938	DN498938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60222.1.A1_at	R	R	CK097800	CK097800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60282.1.S1_at	R	R	CK106463	CK106463	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	NA
PtpAffx.6054.1.S1_at	R	R	CA821641	CA821641	NA	NA	A4GYR1	Photosystem I assembly protein ycf3	NA	NA	LOC_Os10g38216.1	"photosystem I assembly protein ycf3, putative"	Medtr3g169490.1	"Photosystem I assembly protein ycf3, putative "	NA	NA	NA
PtpAffx.60638.1.A1_at	R	R	CK095398	CK095398	NA	NA	P62893	60S ribosomal protein L39	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60648.1.S1_at	R	R	CK103977	CK103977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60650.1.S1_at	R	R	CK105155	CK105155	NA	NA	Q8J1R3	Glutamine synthetase	AT5G35630.3	glutamine synthetase 2 	LOC_Os03g12290.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	NA	NA	NA
PtpAffx.60684.1.S1_at	R	R	CK104383	CK104383	NA	NA	Q9C878	Protein BEARSKIN1	AT2G17040.1	NAC domain containing protein 36 	LOC_Os06g51070.1	"no apical meristem protein, putative, expressed"	Medtr4g103530.1	No apical meristem (NAM) protein 	NA	NA	NA
PtpAffx.60907.1.A1_at	R	R	AY496448.1	AY496448.1	NA	NA	Q9C5U0	Histidine kinase 4	AT2G01830.1	CHASE domain containing histidine kinase protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60907.1.S1_at	R	R	AY496448.1	AY496448.1	NA	NA	Q9C5U0	Histidine kinase 4	AT2G01830.1	CHASE domain containing histidine kinase protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60908.1.A1_at	R	R	AY496447.1	AY496447.1	NA	NA	Q9C6B8	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.2	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	NA
PtpAffx.60908.1.S1_at	R	R	AY496447.1	AY496447.1	NA	NA	Q9C6B8	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.2	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	NA
PtpAffx.60913.1.A1_at	R	R	DN493519	DN493519	NA	NA	Q09188	"ADP,ATP carrier protein"	AT3G08580.2	ADP/ATP carrier 1 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr2g117590.1	Mitochondrial substrate carrier 	NA	NA	NA
PtpAffx.60917.1.S1_at	R	R	DN493466	DN493466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60991.1.S1_a_at	R	R	CK107569	CK107569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60991.1.S1_at	R	R	CK107569	CK107569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.60991.2.S1_at	R	R	DN500602	DN500602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61024.1.S1_at	R	R	BU830090	BU830090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61043.1.S1_at	R	R	DN487904	DN487904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61081.1.S1_at	R	R	DN496158	DN496158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61084.1.S1_at	R	R	DN486528	DN486528	NA	NA	NA	NA	AT5G03070.1	importin alpha isoform 9 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61137.1.S1_at	R	R	DN493482	DN493482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61140.1.A1_at	R	R	DN493323	DN493323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61143.1.A1_at	R	R	DN492999	DN492999	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61149.1.A1_at	R	R	DN492342	DN492342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61166.1.A1_at	R	R	DN491758	DN491758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61192.1.A1_at	R	R	DN491051	DN491051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61201.1.A1_at	R	R	DN490411	DN490411	NA	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os01g68510.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	NA	NA	NA
PtpAffx.61205.1.A1_at	R	R	DN490079	DN490079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61209.1.A1_at	R	R	DN489767	DN489767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61215.1.A1_at	R	R	DN489516	DN489516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61219.1.A1_at	R	R	DN489310	DN489310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61234.1.A1_at	R	R	DN488230	DN488230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61261.1.A1_at	R	R	DN487020	DN487020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61275.1.A1_at	R	R	DN486703	DN486703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61283.1.S1_at	R	R	CK113016	CK113016	scaffold_14:95178-95337(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61292.1.A1_at	R	R	DN486380	DN486380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.61303.1.A1_at	R	R	DN485789	DN485789	NA	NA	Q4P235	Tubulin beta chain	AT1G20010.1	tubulin beta-5 chain 	LOC_Os03g56810.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.61304.1.A1_at	R	R	DN485424	DN485424	NA	NA	NA	NA	AT2G32760.1	unknown protein; Has 229 Blast hits to 229 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	NA	NA	Medtr4g133650.1	hypothetical protein 	NA	NA	NA
PtpAffx.61436.1.A1_at	R	R	BP933725	BP933725	scaffold_2:16042832-16043226(+) (9)//scaffold_504:2206-2600(+) (9)	NA	P92519	Uncharacterized mitochondrial protein AtMg00810	AT4G23160.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 8 	LOC_Os08g29560.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g048830.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.61460.1.A1_at	R	R	BP932936	BP932936	NA	NA	Q5RFB3	Xaa-Pro dipeptidase	AT4G29490.1	Metallopeptidase M24 family protein 	LOC_Os02g13140.1	"xaa-Pro dipeptidase, putative, expressed"	Medtr4g160750.1	Peptidase M24 	NA	NA	NA
PtpAffx.61490.1.A1_at	R	R	BP931531	BP931531	NA	NA	P10330	NADH-ubiquinone oxidoreductase chain 5	ATMG00665.1	NADH dehydrogenase 5B 	NA	NA	Medtr1g006950.1	hypothetical protein 	NA	NA	NA
PtpAffx.618.10.S1_at	R	R	CV269527	CV269527	NA	NA	P27524	"Chlorophyll a-b binding protein CP24 10A, chloroplastic"	AT1G15820.1	light harvesting complex photosystem II subunit 6 	LOC_Os04g38410.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g008680.1	Chlorophyll A-B binding protein 	NA	NA	NA
PtpAffx.61996.2.S1_at	R	R	DN487560	DN487560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62392.1.A1_at	R	R	CV283733	CV283733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62393.1.A1_at	R	R	CV283688	CV283688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62406.1.A1_at	R	R	CV282603	CV282603	NA	NA	NA	NA	AT5G08050.1	Protein of unknown function (DUF1118) 	LOC_Os12g38640.1	expressed protein	Medtr3g036520.1	Protein of unknown function DUF1118 	NA	NA	NA
PtpAffx.62442.1.A1_at	R	R	CV280675	CV280675	scaffold_1:8148708-8148762(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62483.1.A1_at	R	R	CV278273	CV278273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62530.1.A1_at	R	R	CV276012	CV276012	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62537.1.A1_at	R	R	CV275596	CV275596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62550.1.A1_at	R	R	CV275045	CV275045	NA	NA	P51401	60S ribosomal protein L9-B	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os09g31180.1	"ribosomal protein L6, putative, expressed"	Medtr3g122290.1	"Ribosomal protein L6, signature 2 "	NA	NA	NA
PtpAffx.62558.1.A1_at	R	R	CV274803	CV274803	NA	NA	Q0JBH9	Elicitor-responsive protein 3	AT1G63220.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os04g44870.1	"C2 domain containing protein, putative, expressed"	Medtr8g034330.1	C2 	NA	NA	NA
PtpAffx.62569.1.A1_at	R	R	CV274549	CV274549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62570.1.A1_at	R	R	CV274525	CV274525	NA	NA	Q8WSR7	Countin-2	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62579.1.A1_at	R	R	CV274080	CV274080	NA	NA	Q94A20	BI1-like protein	AT4G15470.1	Bax inhibitor-1 family protein 	LOC_Os03g53400.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr1g083870.1	Protein of unknown function UPF0005 	NA	NA	NA
PtpAffx.62583.1.A1_at	R	R	CV274008	CV274008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62584.1.A1_at	R	R	CV273963	CV273963	NA	NA	Q0CEU4	"Probable endo-beta-1,4-glucanase D"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62656.1.A1_at	R	R	CV271031	CV271031	NA	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	Medtr3g156500.1	"Thaumatin, pathogenesis-related "	NA	NA	NA
PtpAffx.62699.1.A1_at	R	R	CV269207	CV269207	scaffold_6:455616-455787(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62728.1.A1_at	R	R	CV268290	CV268290	scaffold_2:18865715-18865893(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62743.1.A1_at	R	R	CV267782	CV267782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62810.1.A1_at	R	R	CV265038	CV265038	scaffold_2:7666856-7667021(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62820.1.A1_at	R	R	CV264858	CV264858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62828.1.A1_at	R	R	CV264533	CV264533	scaffold_14:8147134-8147627(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62846.1.A1_at	R	R	CV264722	CV264722	scaffold_2:12334992-12335236(+) (9)//scaffold_4:17637194-17637544(+) (11)//scaffold_46:10134-10454(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62866.1.A1_at	R	R	CV263397	CV263397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.62927.1.A1_at	R	R	CV261085	CV261085	scaffold_5:13386489-13386957(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63029.1.A1_at	R	R	CV257004	CV257004	NA	NA	NA	NA	NA	NA	NA	NA	Medtr8g118890.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	NA	NA
PtpAffx.63041.1.A1_at	R	R	CV256458	CV256458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63052.1.A1_at	R	R	CV256184	CV256184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63082.1.A1_at	R	R	CV255204	CV255204	NA	NA	NA	NA	AT3G03330.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os11g16410.5	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g090010.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.63094.1.A1_at	R	R	CV254722	CV254722	scaffold_15:11655205-11655453(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63117.1.A1_at	R	R	CV253686	CV253686	scaffold_6:24367395-24367782(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63120.1.A1_at	R	R	CV253604	CV253604	scaffold_8:10207274-10207521(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63297.1.A1_at	R	R	CV245511	CV245511	scaffold_1:402845-403299(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63390.1.A1_at	R	R	CV242719	CV242719	scaffold_3:10680395-10680840(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63396.1.A1_at	R	R	CV242436	CV242436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63458.1.A1_at	R	R	CV240292	CV240292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63470.1.A1_at	R	R	CV239719	CV239719	NA	NA	P46518	Late embryogenesis abundant protein Lea14-A	AT2G46140.1	Late embryogenesis abundant protein 	LOC_Os01g12580.1	"late embryogenesis abundant protein, putative, expressed"	Medtr7g088940.1	Late embryogenesis abundant protein 2 	NA	NA	NA
PtpAffx.63587.1.A1_at	R	R	CV234556	CV234556	NA	NA	P70947	Putative phosphatase yitU	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63601.1.A1_at	R	R	CV233848	CV233848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.63624.2.S1_at	R	R	CX654381	CX654381	NA	NA	Q9C9U8	Probable calcium-binding protein CML26	AT1G73630.1	EF hand calcium-binding protein family 	LOC_Os05g13580.1	"OsCML18 - Calmodulin-related calcium sensor protein, expressed"	Medtr4g155110.1	Calcium-binding EF-hand 	NA	NA	NA
PtpAffx.63775.1.A1_at	R	R	CV227901	CV227901	NA	NA	NA	NA	AT1G11755.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os03g10080.5	expressed protein	Medtr5g007450.1	Di-trans-poly-cis-decaprenylcistransferase 	NA	NA	NA
PtpAffx.64204.1.A1_at	R	R	BP933629	BP933629	NA	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G42830.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g01350.1	"transferase family protein, putative, expressed"	Medtr3g147530.1	Transferase 	NA	NA	NA
PtpAffx.64650.1.S1_at	R	R	CK115553	CK115553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.64845.1.S1_at	R	R	BU817117	BU817117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6485.2.S1_a_at	R	R	BU889574	BU889574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.64868.1.S1_a_at	R	R	CK094921	CK094921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.64868.1.S1_at	R	R	CK094921	CK094921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65013.1.A1_at	R	R	CK097949	CK097949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65024.1.A1_at	R	R	CK097451	CK097451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65047.1.S1_at	R	R	CF232766	CF232766	NA	NA	O65351	Subtilisin-like protease	AT2G19170.1	subtilisin-like serine protease 3 	LOC_Os06g48650.2	"OsSub52 - Putative Subtilisin homologue, expressed"	Medtr2g042580.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	NA	NA	NA
PtpAffx.65075.1.A1_at	R	R	CK095431	CK095431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65080.1.A1_at	R	R	CK095276	CK095276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65081.1.S1_at	R	R	CK095257	CK095257	scaffold_18:11314513-11317201(+) (9)	NA	NA	NA	AT5G57610.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os02g54510.3	"protein kinase domain containing protein, expressed"	Medtr8g128470.1	Octicosapeptide/Phox/Bem1p; Protein kinase 	NA	NA	NA
PtpAffx.65083.1.A1_at	R	R	CK095236	CK095236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65086.1.A1_at	R	R	CK095189	CK095189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65099.1.A1_at	R	R	CK094918	CK094918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65108.1.S1_at	R	R	CK094740	CK094740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65109.1.A1_at	R	R	CK094683	CK094683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65111.1.A1_at	R	R	CK094652	CK094652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65114.1.A1_at	R	R	CK094605	CK094605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65120.1.S1_at	R	R	CK094394	CK094394	NA	NA	P51417	60S ribosomal protein L15 (Fragment)	AT4G16720.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	NA	NA	NA
PtpAffx.65124.1.A1_at	R	R	CK094285	CK094285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65125.1.A1_at	R	R	CK094271	CK094271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65135.1.A1_at	R	R	CK093957	CK093957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65139.1.A1_at	R	R	CK093880	CK093880	NA	NA	P36519	"54S ribosomal protein L7, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65142.1.A1_at	R	R	CK093833	CK093833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65145.1.A1_at	R	R	CK093532	CK093532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65148.1.A1_at	R	R	CK093212	CK093212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65149.1.A1_at	R	R	CK093111	CK093111	NA	NA	Q92616	Translational activator GCN1	AT1G64790.2	ILITYHIA 	NA	NA	Medtr7g143040.1	Armadillo-like helical 	NA	NA	NA
PtpAffx.65151.1.A1_at	R	R	CK092992	CK092992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65218.1.A1_at	R	R	CK090369	CK090369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65222.1.A1_at	R	R	CK090070	CK090070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65226.1.A1_at	R	R	CK089632	CK089632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65228.1.A1_at	R	R	CK088943	CK088943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.653.13.S1_at	R	R	CV273014	CV273014	NA	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	NA	NA	NA
PtpAffx.653.15.S1_at	R	R	CV253530	CV253530	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65435.1.S1_at	R	R	CF228208	CF228208	NA	NA	NA	NA	NA	NA	NA	NA	Medtr2g033400.2	"Myb, DNA-binding; Homeodomain-related "	NA	NA	NA
PtpAffx.65476.1.S1_s_at	R	R	CX656312	CX656312	NA	NA	NA	NA	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os03g23010.5	expressed protein	Medtr3g026140.1	Aldehyde dehydrogenase 	NA	NA	NA
PtpAffx.65874.1.S1_at	R	R	DN503229	DN503229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.65994.1.S1_at	R	R	DN496079	DN496079	NA	NA	NA	NA	AT2G20360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g57180.2	"NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.65994.2.A1_at	R	R	DN486511	DN486511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.66020.1.S1_at	R	R	DN486303	DN486303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.66210.1.S1_at	R	R	BU878186	BU878186	scaffold_3:16330650-16331127(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.66325.1.S1_at	R	R	BU874115	BU874115	NA	NA	Q39817	Calnexin homolog	AT5G07340.2	Calreticulin family protein 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr3g151490.1	Concanavalin A-like lectin/glucanase 	NA	NA	NA
PtpAffx.66333.1.S1_at	R	R	BU873607	BU873607	NA	NA	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.1	NAD-dependent epimerase/dehydratase 	NA	NA	NA
PtpAffx.66411.1.S1_at	R	R	BU869695	BU869695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.66470.1.A1_at	R	R	DN488894	DN488894	NA	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr6g014590.1	UDP-glucuronosyl/UDP-glucosyltransferase 	NA	NA	NA
PtpAffx.66726.1.S1_at	R	R	CK106035	CK106035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6692.10.S1_at	R	R	CK096206	CK096206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6692.4.A1_at	R	R	BU895159	BU895159	NA	NA	Q9M1Y3	F-box/ankyrin repeat protein SKIP35	AT2G44090.2	Ankyrin repeat family protein 	LOC_Os11g14180.1	expressed protein	Medtr7g123850.1	Heavy metal transport/detoxification protein 	NA	NA	NA
PtpAffx.67063.1.S1_at	R	R	BI125674	BI125674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67065.1.S1_at	R	R	CK104928	CK104928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67069.1.S1_at	R	R	CK095382	CK095382	NA	NA	P0C952	Histone H2A	AT3G20670.1	histone H2A 13 	LOC_Os07g36140.1	"core histone H2A/H2B/H3/H4, putative, expressed"	AC234702_4.1	Histone core; Histone-fold AC234702.1 40303-41045 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.67093.1.S1_at	R	R	CB239697	CB239697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67102.1.S1_at	R	R	CK104085	CK104085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67108.1.S1_at	R	R	CK103959	CK103959	NA	NA	O94671	Probable homoserine dehydrogenase	AT1G31230.1	aspartate kinase-homoserine dehydrogenase i 	LOC_Os09g12290.1	"bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g132760.1	"Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I "	NA	NA	NA
PtpAffx.67228.1.S1_at	R	R	BI068503	BI068503	NA	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os07g41580.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr5g103350.1	"Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone "	NA	NA	NA
PtpAffx.67338.1.A1_at	R	R	DN492992	DN492992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67442.1.S1_at	R	R	DN498472	DN498472	scaffold_4:22562838-22563081(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67456.1.S1_at	R	R	BU874075	BU874075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67465.1.S1_at	R	R	DN497141	DN497141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67478.1.S1_at	R	R	BU893248	BU893248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67574.1.S1_at	R	R	DN503370	DN503370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67575.1.A1_at	R	R	DN493385	DN493385	NA	NA	P18562	Uracil phosphoribosyltransferase	AT3G27190.1	uridine kinase-like 2 	LOC_Os09g32820.1	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	NA	NA	NA
PtpAffx.67576.1.S1_at	R	R	CK115371	CK115371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67577.1.A1_at	R	R	DN493374	DN493374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67615.1.A1_at	R	R	DN491698	DN491698	scaffold_8:2664811-2665106(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67676.1.S1_at	R	R	BU887544	BU887544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67694.1.A1_at	R	R	DN487593	DN487593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67699.1.A1_at	R	R	DN487557	DN487557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67704.1.A1_at	R	R	DN487457	DN487457	NA	NA	Q9VMU4	60S ribosomal protein L37a	AT3G60245.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	NA	NA	NA
PtpAffx.67712.1.A1_at	R	R	DN487065	DN487065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67722.1.A1_at	R	R	DN486711	DN486711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67732.1.A1_at	R	R	DN486309	DN486309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67745.1.A1_at	R	R	DN485531	DN485531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67757.1.A1_at	R	R	DN484975	DN484975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67765.1.A1_at	R	R	DN484537	DN484537	NA	NA	NA	NA	AT1G53190.2	RING/U-box superfamily protein 	LOC_Os01g47740.4	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.67768.1.A1_at	R	R	DN484426	DN484426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6777.1.S1_at	R	R	CK115597	CK115597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67788.1.A1_at	R	R	BP931301	BP931301	scaffold_1:17703014-17703498(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67793.1.A1_at	R	R	BP936682	BP936682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6780.1.S1_s_at	R	R	CK115423	CK115423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67841.1.A1_at	R	R	BP934913	BP934913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67845.1.A1_at	R	R	BP935427	BP935427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6788.1.S1_at	R	R	CK115004	CK115004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.67884.1.A1_at	R	R	BP933003	BP933003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6789.1.S1_at	R	R	CK114982	CK114982	NA	NA	NA	NA	AT1G02880.4	thiamin pyrophosphokinase1 	NA	NA	Medtr7g130470.1	"Thiamin pyrophosphokinase, catalytic region "	NA	NA	NA
PtpAffx.67901.1.A1_at	R	R	BP932268	BP932268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6826.3.S1_a_at	R	R	CV254232	CV254232	NA	NA	P95982	Tyrosyl-tRNA synthetase	AT2G33840.1	"Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial "	LOC_Os08g05490.1	"tRNA synthetase, putative, expressed"	Medtr1g008370.1	"Aminoacyl-tRNA synthetase, class Ib "	NA	NA	NA
PtpAffx.68405.1.S1_a_at	R	R	CV264751	CV264751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6848.1.S1_at	R	R	CK111371	CK111371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.68897.1.A1_at	R	R	CV280195	CV280195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.68917.3.S1_at	R	R	CV279059	CV279059	scaffold_1:28641587-28642121(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.68944.1.A1_at	R	R	CV277510	CV277510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.68969.1.A1_at	R	R	CV276350	CV276350	NA	NA	P62981	Ubiquitin-40S ribosomal protein S27a	AT2G47110.2	ubiquitin 6 	LOC_Os01g22490.1	"40S ribosomal protein S27a, putative, expressed"	Medtr5g035270.1	Ubiquitin; Ribosomal protein S27a 	NA	NA	NA
PtpAffx.68972.1.A1_at	R	R	CV276149	CV276149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.68996.1.A1_at	R	R	CV275096	CV275096	NA	NA	Q5BCG1	"3'(2'),5'-bisphosphate nucleotidase"	AT5G63980.1	Inositol monophosphatase family protein 	LOC_Os12g08280.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	NA	NA
PtpAffx.69000.1.A1_at	R	R	CV274804	CV274804	NA	NA	Q08745	40S ribosomal protein S10-A	AT5G41520.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.2	"Plectin/S10, N-terminal "	NA	NA	NA
PtpAffx.69011.1.A1_at	R	R	CV274046	CV274046	NA	NA	Q54D04	"Probable malate dehydrogenase 2, mitochondrial"	AT5G43330.1	Lactate/malate dehydrogenase family protein 	LOC_Os04g46560.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr1g042850.1	"Malate dehydrogenase, active site "	NA	NA	NA
PtpAffx.69016.1.A1_at	R	R	CV273869	CV273869	NA	NA	NA	NA	AT3G44100.1	MD-2-related lipid recognition domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	NA	NA	NA
PtpAffx.69020.1.A1_at	R	R	CV273730	CV273730	NA	NA	Q86K01	60S ribosomal protein L15	AT4G16720.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	NA	NA	NA
PtpAffx.69021.1.A1_at	R	R	CV273699	CV273699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69034.1.A1_at	R	R	CV273091	CV273091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69041.1.A1_at	R	R	CV272828	CV272828	scaffold_2:9370761-9371107(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69061.1.A1_at	R	R	CV272547	CV272547	scaffold_13:12084933-12085171(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.6908.2.A1_at	R	R	BP929807	BP929807	NA	NA	NA	NA	AT5G17440.1	LUC7 related protein 	LOC_Os03g62640.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	NA	NA	NA
PtpAffx.69093.1.A1_at	R	R	CV270450	CV270450	NA	NA	NA	NA	AT1G76980.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 61 Blast hits to 61 proteins in 18 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 2; Plants - 40; Viruses - 3; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69106.1.S1_at	R	R	CV270026	CV270026	scaffold_17:12530723-12531080(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69108.1.S1_at	R	R	AJ767594	AJ767594	scaffold_10:11028268-11028668(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.692.19.A1_at	R	R	AJ772427	AJ772427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.692.30.A1_at	R	R	CV268251	CV268251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.692.36.S1_at	R	R	CK097610	CK097610	NA	NA	NA	NA	NA	NA	NA	NA	Medtr5g091120.1	"poly-binding protein C-terminal interacting protein 6, putative "	NA	NA	NA
PtpAffx.69228.1.A1_at	R	R	CV265498	CV265498	scaffold_5:15292518-15292739(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69243.1.A1_at	R	R	CV264860	CV264860	NA	NA	P17772	Organ-specific protein S2	NA	NA	NA	NA	Medtr3g041180.1	"specific tissue protein 2, putative "	NA	NA	NA
PtpAffx.69283.1.A1_at	R	R	CV263306	CV263306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69299.1.A1_at	R	R	DN487010	DN487010	NA	NA	NA	NA	AT3G58800.1	unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g54440.1	expressed protein	Medtr5g099080.1	hypothetical protein 	NA	NA	NA
PtpAffx.69308.1.A1_at	R	R	CV265598	CV265598	scaffold_6:4257842-4258185(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69325.1.A1_at	R	R	CV261689	CV261689	NA	NA	NA	NA	AT2G20390.1	unknown protein; Has 50 Blast hits to 50 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g04030.1	expressed protein	Medtr7g116910.1	hypothetical protein 	NA	NA	NA
PtpAffx.69330.1.A1_at	R	R	CV261561	CV261561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69333.1.A1_at	R	R	CV261200	CV261200	scaffold_3:10215833-10216169(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69355.1.A1_at	R	R	CV260193	CV260193	NA	NA	NA	NA	AT2G43080.1	P4H isoform 1 	LOC_Os04g27850.1	"oxidoreductase, putative, expressed"	Medtr1g147170.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.69360.1.A1_at	R	R	CV260066	CV260066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69391.1.A1_at	R	R	CV260334	CV260334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69401.1.A1_at	R	R	CV258444	CV258444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69423.1.A1_at	R	R	CV257781	CV257781	scaffold_16:6327080-6327527(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69444.1.A1_at	R	R	CV257148	CV257148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69470.1.A1_at	R	R	CV256079	CV256079	scaffold_5:4530288-4530522(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69474.1.A1_at	R	R	CV255992	CV255992	scaffold_10:10335387-10335768(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69483.1.A1_at	R	R	CV255661	CV255661	NA	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os06g48300.1	"protein phosphatase 2C, putative, expressed"	Medtr1g016250.1	Protein phosphatase 2C; 	NA	NA	NA
PtpAffx.69509.1.A1_at	R	R	CV254759	CV254759	scaffold_9:4819408-4819585(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69554.1.A1_at	R	R	CV253487	CV253487	NA	NA	Q9FLX9	Notchless protein homolog	AT5G52820.1	"WD-40 repeat family protein / notchless protein, putative "	LOC_Os10g01540.1	"notchless protein, putative, expressed"	Medtr8g138930.1	"Protein will die slowly, putative "	NA	NA	NA
PtpAffx.69561.1.A1_at	R	R	CV253209	CV253209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69655.1.A1_at	R	R	CV247857	CV247857	scaffold_2:1312767-1312976(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69704.1.A1_at	R	R	CV246115	CV246115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.69722.1.A1_at	R	R	CV245584	CV245584	NA	NA	NA	NA	AT1G70000.2	myb-like transcription factor family protein 	NA	NA	Medtr5g038100.1	"Zinc finger, CCHC-type; Homeodomain-related "	NA	NA	NA
PtpAffx.69832.1.A1_at	R	R	CV241706	CV241706	NA	NA	P50162	Tropinone reductase 1	AT2G29360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os11g43200.1	"tropinone reductase 2, putative"	Medtr8g147520.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.70032.1.A1_at	R	R	CV234403	CV234403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.70037.1.A1_at	R	R	CV234075	CV234075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.70094.1.A1_at	R	R	CV232142	CV232142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7016.1.A1_at	R	R	CK095177	CK095177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7018.1.S1_at	R	R	CK095157	CK095157	NA	NA	O14321	Sterol 24-C-methyltransferase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.70190.1.A1_at	R	R	CV228236	CV228236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7025.2.S1_at	R	R	CK095019	CK095019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7053.1.S1_at	R	R	CK103972	CK103972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.70585.1.S1_at	R	R	BP936478	BP936478	NA	NA	Q8U431	Histidyl-tRNA synthetase	AT3G46100.1	Histidyl-tRNA synthetase 1 	LOC_Os02g51830.1	"tRNA synthetase class II core domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.71037.1.S1_at	R	R	DN493445	DN493445	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71040.1.S1_at	R	R	DN493426	DN493426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71066.10.S1_at	R	R	DN484638	DN484638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71189.4.A1_at	R	R	AJ770424	AJ770424	NA	NA	NA	NA	AT1G67850.2	Protein of unknown function (DUF707) 	NA	NA	Medtr3g102390.1	Protein of unknown function DUF707 	NA	NA	NA
PtpAffx.71229.1.S1_at	R	R	CK095410	CK095410	NA	NA	NA	NA	AT1G65700.2	Small nuclear ribonucleoprotein family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71230.1.S1_at	R	R	CK095409	CK095409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71231.1.S1_at	R	R	BI126897	BI126897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71246.1.S1_at	R	R	BI125130	BI125130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71247.1.S1_at	R	R	CK094803	CK094803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71253.1.S1_at	R	R	CK094640	CK094640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71405.1.A1_at	R	R	CK096416	CK096416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71415.1.S1_at	R	R	CK096160	CK096160	NA	NA	P92519	Uncharacterized mitochondrial protein AtMg00810	ATMG00810.1	DNA/RNA polymerases superfamily protein 	LOC_Os06g47730.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr5g072700.1	"Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.71421.2.A1_at	R	R	CK095916	CK095916	NA	NA	Q8VZY6	Polycomb group protein FIE2	AT3G20740.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g04290.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.71437.1.S1_at	R	R	BI126629	BI126629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71438.1.A1_at	R	R	CK095266	CK095266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71445.1.A1_at	R	R	CK095044	CK095044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71446.1.A1_at	R	R	CK095033	CK095033	NA	NA	Q9V3G7	26S proteasome non-ATPase regulatory subunit 6	AT4G24820.2	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os02g38810.1	"26S proteasome non-ATPase regulatory subunit 6, putative, expressed"	Medtr8g109930.1	Proteasome component region PCI 	NA	NA	NA
PtpAffx.71449.1.S1_a_at	R	R	CK094558	CK094558	NA	NA	O13672	60S ribosomal protein L8	AT2G47610.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.71454.1.A1_at	R	R	CK094796	CK094796	NA	NA	NA	NA	AT5G16950.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71457.1.S1_at	R	R	BI124097	BI124097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71461.1.A1_at	R	R	CK094424	CK094424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71468.1.A1_at	R	R	CK094293	CK094293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71474.1.A1_at	R	R	CK093916	CK093916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71476.1.A1_at	R	R	CK093868	CK093868	NA	NA	Q8S2T0	Protein GRIP	AT5G66030.1	Golgi-localized GRIP domain-containing protein 	NA	NA	Medtr5g023650.1	GRIP 	NA	NA	NA
PtpAffx.71553.1.A1_at	R	R	CK090344	CK090344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71555.1.A1_at	R	R	CK089998	CK089998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71590.1.S1_at	R	R	DN484720	DN484720	NA	NA	Q8GV05	Transcription factor TRY	AT5G53200.1	Homeodomain-like superfamily protein 	LOC_Os01g43180.1	"MYB family transcription factor, putative"	Medtr5g009470.1	Homeodomain-related; 	NA	NA	NA
PtpAffx.7163.1.S1_at	R	R	CK107353	CK107353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71719.1.A1_at	R	R	CV259560	CV259560	NA	NA	Q9SA34	Probable inosine-5'-monophosphate dehydrogenase	AT1G16350.1	Aldolase-type TIM barrel family protein 	LOC_Os03g56800.1	"CBS domain containing membrane protein, putative, expressed"	Medtr7g100530.1	IMP dehydrogenase; 	NA	NA	NA
PtpAffx.7175.1.A1_at	R	R	CK097187	CK097187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.71769.1.S1_at	R	R	CF227716	CF227716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7178.1.S1_at	R	R	BU822573	BU822573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7182.3.A1_at	R	R	CV253214	CV253214	NA	NA	NA	NA	AT1G79390.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g29320.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.7186.1.S1_at	R	R	CK106741	CK106741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.719.1.A1_at	R	R	CV270015	CV270015	NA	NA	P40782	Cyprosin (Fragment)	AT1G62290.2	Saposin-like aspartyl protease family protein 	LOC_Os01g47410.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr7g134920.2	"Peptidase A1, pepsin "	NA	NA	NA
PtpAffx.7198.1.S1_a_at	R	R	CK106201	CK106201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.720.3.S1_at	R	R	CK116163	CK116163	NA	NA	P84986	Stable protein 1 (Fragments)	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7214.2.A1_at	R	R	CK095981	CK095981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72180.1.S1_at	R	R	AI162185	AI162185	NA	NA	Q9H0R3	Transmembrane protein 222	AT3G51040.3	RTE1-homolog 	LOC_Os03g58520.1	"green ripe-like, putative, expressed"	Medtr5g021070.1	Protein of unknown function DUF778 	NA	NA	NA
PtpAffx.72205.1.S1_at	R	R	DN493241	DN493241	NA	NA	P92519	Uncharacterized mitochondrial protein AtMg00810	AT4G23160.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 8 	LOC_Os01g05370.1	"retrotransposon protein, putative, unclassified"	Medtr5g048830.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.72313.1.S1_at	R	R	BU891689	BU891689	NA	NA	NA	NA	NA	NA	LOC_Os01g15580.1	"disease resistance protein RGA2, putative, expressed"	Medtr8g012070.1	NB-ARC 	NA	NA	NA
PtpAffx.7232.1.S1_at	R	R	CK105280	CK105280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72354.1.S1_at	R	R	BU889551	BU889551	scaffold_8:11025154-11025416(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7239.1.S1_at	R	R	CK105011	CK105011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7243.3.S1_at	R	R	BI125294	BI125294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7250.1.S1_at	R	R	CK094635	CK094635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7252.1.A1_at	R	R	CK094568	CK094568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72548.1.A1_at	R	R	DN492220	DN492220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7255.1.A1_at	R	R	CK094447	CK094447	NA	NA	NA	NA	NA	NA	LOC_Os12g05520.1	"retrotransposon protein, putative, unclassified"	NA	NA	NA	NA	NA
PtpAffx.7259.1.S1_at	R	R	CK094332	CK094332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7260.1.A1_at	R	R	CK094274	CK094274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7261.1.S1_at	R	R	CK104212	CK104212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7268.1.A1_at	R	R	CV256585	CV256585	scaffold_1:46101528-46101789(-) (9)//scaffold_14:13579209-13579470(-) (9)//scaffold_19:3994922-3995183(-) (9)//scaffold_3:19905082-19905343(+) (9)//scaffold_31:179445-179706(-) (9)//scaffold_4:22714152-22714413(+) (10)//scaffold_6:8413880-8414141(-) (9)//scaffold_6:21603385-21603646(-) (9)//scaffold_8:258514-258775(+) (9)	NA	NA	NA	NA	NA	LOC_Os02g12320.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	AC229695_24.1	Chromo AC229695.5 111963-111064 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.72702.1.S1_at	R	R	BU872005	BU872005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72719.1.S1_at	R	R	DN497063	DN497063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72849.1.S1_at	R	R	DN499884	DN499884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7286.1.A1_at	R	R	CK092753	CK092753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7287.1.A1_at	R	R	CK092627	CK092627	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.72903.1.S1_at	R	R	CX655584	CX655584	NA	NA	NA	NA	AT5G12930.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g31350.1	expressed protein	Medtr2g117870.1	hypothetical protein 	NA	NA	NA
PtpAffx.72907.1.A1_at	R	R	DN489282	DN489282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73106.1.S1_at	R	R	CK095604	CK095604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7320.1.A1_at	R	R	CK091118	CK091118	NA	NA	NA	NA	AT4G32000.2	Protein kinase superfamily protein 	NA	NA	Medtr3g137950.1	Protein kinase 	NA	NA	NA
PtpAffx.7358.1.A1_at	R	R	CK087902	CK087902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73613.1.S1_at	R	R	AF236074.1	AF236074.1	NA	NA	Q42899	Glutamine synthetase cytosolic isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	NA	NA	NA
PtpAffx.73638.1.S1_at	R	R	DN492437	DN492437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73692.1.S1_at	R	R	DN500812	DN500812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7370.1.S1_at	R	R	CF237010	CF237010	scaffold_8:7270525-7270776(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73721.1.S1_at	R	R	DN499231	DN499231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73751.1.S1_at	R	R	BU874248	BU874248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73770.1.S1_at	R	R	DN496814	DN496814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73772.1.S1_at	R	R	DN487146	DN487146	NA	NA	O02640	"Probable malate dehydrogenase, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os12g43630.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	NA	NA	NA
PtpAffx.73877.1.A1_at	R	R	DN492684	DN492684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73880.1.A1_at	R	R	DN492462	DN492462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73903.1.A1_at	R	R	DN491776	DN491776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73959.1.A1_at	R	R	DN489199	DN489199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73964.1.A1_at	R	R	DN488882	DN488882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73967.1.S1_at	R	R	BU862806	BU862806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73976.1.A1_at	R	R	DN488147	DN488147	scaffold_1:31621293-31621347(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73987.1.A1_at	R	R	DN487699	DN487699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73988.1.A1_at	R	R	DN487617	DN487617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73990.1.A1_at	R	R	DN487542	DN487542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73999.1.S1_at	R	R	BU870918	BU870918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.73999.2.A1_at	R	R	DN487205	DN487205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74013.1.A1_at	R	R	DN486805	DN486805	NA	NA	NA	NA	AT5G38660.1	acclimation of photosynthesis to  environment 	LOC_Os08g27010.1	"APE1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.74020.1.A1_at	R	R	DN486604	DN486604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74028.1.A1_at	R	R	DN486438	DN486438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74034.1.A1_at	R	R	DN486362	DN486362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74079.1.A1_at	R	R	DN484634	DN484634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74080.1.S1_at	R	R	DN484543	DN484543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.741.1.A1_at	R	R	CV279243	CV279243	NA	NA	P46405	40S ribosomal protein S12	AT1G15930.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g05580.1	"ribosomal protein L7Ae, putative, expressed"	Medtr4g022230.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	NA	NA	NA
PtpAffx.74156.1.A1_at	R	R	BP934907	BP934907	NA	NA	Q84UU4	Alpha-humulene/(-)-(E)-beta-caryophyllene synthase	AT5G23960.2	terpene synthase 21 	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr5g102100.1	Terpene synthase-like; Terpenoid synthase 	NA	NA	NA
PtpAffx.74197.1.A1_at	R	R	BP933793	BP933793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74203.1.A1_at	R	R	BP933536	BP933536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74248.1.A1_at	R	R	BP931734	BP931734	scaffold_4:71685-72038(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74280.1.A1_at	R	R	CV254557	CV254557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7455.4.S1_at	R	R	CV263677	CV263677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7479.2.A1_at	R	R	DN490457	DN490457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.74828.1.S1_at	R	R	CB239366	CB239366	scaffold_17:5342066-5342105(-) (10)//scaffold_17:5342566-5342605(-) (10)//scaffold_17:8686799-8686838(-) (10)//scaffold_17:8739689-8741675(+) (10)//scaffold_17:8740179-8742165(+) (10)//scaffold_17:8740669-8743271(+) (10)//scaffold_17:8741657-8743759(+) (10)//scaffold_17:8742147-8744424(+) (10)//scaffold_17:8742637-8744911(+) (10)//scaffold_17:8743253-8745408(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75063.1.S1_at	R	R	DN487936	DN487936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75295.1.A1_at	R	R	CV275695	CV275695	NA	NA	Q54YD2	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0278295	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75296.1.A1_at	R	R	CV275668	CV275668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75297.1.A1_at	R	R	CV275569	CV275569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75317.1.A1_at	R	R	CV274316	CV274316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75318.1.A1_at	R	R	CV274309	CV274309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75322.1.A1_at	R	R	CV274115	CV274115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75329.1.A1_at	R	R	CV273982	CV273982	scaffold_11:5527519-5527675(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75353.1.A1_at	R	R	CV273310	CV273310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75358.1.A1_at	R	R	CV273170	CV273170	NA	NA	Q27268	ATP-dependent RNA helicase WM6	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36920.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.2	ATP-requiring DNA helicase RecQ; 	NA	NA	NA
PtpAffx.75431.1.A1_at	R	R	CV270541	CV270541	NA	NA	O82598	Aquaporin TIP1-3	AT4G01470.1	tonoplast intrinsic protein 1;3 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75439.1.A1_at	R	R	CV270066	CV270066	NA	NA	NA	NA	AT4G01710.1	ARP2/3 complex 16 kDa subunit (p16-Arc) 	LOC_Os11g35360.2	"actin polymerization factor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.75573.1.A1_at	R	R	CV264914	CV264914	scaffold_6:16603751-16604151(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75582.1.A1_at	R	R	CV265870	CV265870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75612.1.A1_at	R	R	CV263379	CV263379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75615.1.A1_at	R	R	CV263263	CV263263	scaffold_10:18835940-18836203(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75735.1.A1_at	R	R	CV259393	CV259393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75789.1.A1_at	R	R	CV257346	CV257346	scaffold_17:9427332-9427490(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75812.1.A1_at	R	R	CV256411	CV256411	NA	NA	A9P822	S-adenosylmethionine synthase 1	AT1G02500.2	S-adenosylmethionine synthetase 1 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	NA	NA	NA
PtpAffx.7582.2.A1_at	R	R	DN487290	DN487290	NA	NA	Q9SVR0	60S ribosomal protein L13a-3	AT4G13170.1	Ribosomal protein L13 family protein 	LOC_Os03g54890.3	"ribosomal protein L13, putative, expressed"	Medtr1g028260.1	"Ribosomal protein L13, archea and eukaryotic form "	NA	NA	NA
PtpAffx.75822.1.A1_at	R	R	CV256029	CV256029	scaffold_3:14522673-14523126(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75837.1.A1_at	R	R	CV255350	CV255350	scaffold_7:13672706-13673032(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75843.1.A1_at	R	R	CV255259	CV255259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75849.1.A1_at	R	R	CV255155	CV255155	scaffold_18:2067584-2067878(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75861.1.A1_at	R	R	CV254692	CV254692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7599.1.A1_at	R	R	CV281761	CV281761	scaffold_2:10819070-10819387(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.75999.1.A1_at	R	R	CV251974	CV251974	scaffold_15:5150069-5150198(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76057.1.A1_at	R	R	CV245648	CV245648	NA	NA	Q5RFH0	"ATP synthase subunit g, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7611.2.A1_at	R	R	CV274707	CV274707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7611.4.S1_at	R	R	CV131970	CV131970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76299.1.A1_at	R	R	CV237101	CV237101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76303.1.A1_at	R	R	CV236737	CV236737	NA	NA	Q88YD2	Polyphosphate kinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76311.1.A1_at	R	R	CV236272	CV236272	NA	NA	NA	NA	AT5G24165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76442.1.A1_at	R	R	CV230385	CV230385	scaffold_19:14348038-14348343(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76535.1.A1_at	R	R	CV243843	CV243843	scaffold_19:15351891-15352344(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.76621.1.S1_at	R	R	CK096589	CK096589	NA	NA	NA	NA	AT5G59610.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g60790.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g117200.2	"Heat shock protein DnaJ, N-terminal "	NA	NA	NA
PtpAffx.7684.2.S1_at	R	R	CK094132	CK094132	scaffold_8:11612576-11616160(+) (9)	NA	Q40677	"Fructose-bisphosphate aldolase, chloroplastic"	AT1G04555.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33380.1); Has 84 Blast hits to 83 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57170.1	expressed protein	Medtr1g065670.1	hypothetical protein 	NA	NA	NA
PtpAffx.7694.2.S1_at	R	R	BU831135	BU831135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77231.2.S1_at	R	R	CV276942	CV276942	scaffold_5:24753691-24754201(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77319.1.A1_at	R	R	DN493491	DN493491	NA	NA	Q03134	Probable formate dehydrogenase	AT5G14780.1	formate dehydrogenase 	LOC_Os06g29220.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.77493.1.A1_at	R	R	CK097180	CK097180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77537.1.S1_at	R	R	CK105657	CK105657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77548.1.S1_at	R	R	CK105289	CK105289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77550.1.S1_at	R	R	CK105179	CK105179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77574.1.S1_at	R	R	CK094452	CK094452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77578.1.S1_at	R	R	CK104291	CK104291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77580.1.S1_at	R	R	CK104200	CK104200	NA	NA	Q7SE71	"ATP synthase subunit 4, mitochondrial"	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77692.1.A1_at	R	R	CK097801	CK097801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7770.2.S1_at	R	R	DN488472	DN488472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77707.1.A1_at	R	R	CK097241	CK097241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77708.1.A1_at	R	R	CK097133	CK097133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77744.1.S1_at	R	R	CK095956	CK095956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77766.1.A1_at	R	R	CK095335	CK095335	NA	NA	P53596	"Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial"	AT5G23250.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	NA	NA	NA
PtpAffx.77778.1.A1_at	R	R	CK094968	CK094968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77780.1.A1_at	R	R	CK094923	CK094923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77784.1.A1_at	R	R	CK094739	CK094739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77786.1.A1_at	R	R	CK094726	CK094726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77787.1.A1_at	R	R	CK094725	CK094725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77788.1.A1_at	R	R	CK094684	CK094684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77789.1.A1_at	R	R	CK094672	CK094672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77792.1.S1_at	R	R	BI124231	BI124231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77802.1.A1_at	R	R	CK094254	CK094254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77807.1.A1_at	R	R	CK093945	CK093945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77813.1.A1_at	R	R	CK093042	CK093042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77819.1.A1_at	R	R	CK092607	CK092607	NA	NA	NA	NA	AT5G62890.3	Xanthine/uracil permease family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77822.1.A1_at	R	R	CK092392	CK092392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7785.4.A1_at	R	R	CV265733	CV265733	scaffold_16:4694071-4694251(+) (10)	NA	Q9ZSD4	Syntaxin-121	AT3G11820.1	syntaxin of plants 121 	LOC_Os03g57310.1	"syntaxin, putative, expressed"	Medtr1g149850.1	Syntaxin/epimorphin family 	NA	NA	NA
PtpAffx.77872.1.A1_at	R	R	CK090915	CK090915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77898.1.A1_at	R	R	CK089673	CK089673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77902.1.A1_at	R	R	CK089553	CK089553	NA	NA	Q94CH8	GDSL esterase/lipase EXL1	AT1G75880.2	SGNH hydrolase-type esterase superfamily protein 	NA	NA	Medtr8g089400.1	"Lipolytic enzyme, G-D-S-L "	NA	NA	NA
PtpAffx.77909.1.A1_at	R	R	CK088927	CK088927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77916.1.A1_at	R	R	CK088548	CK088548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.77954.1.S1_at	R	R	AY302066.1	AY302066.1	NA	NA	Q940X7	RING-box protein 1a	AT5G20570.1	RING-box 1 	LOC_Os01g01700.1	"anaphase-promoting complex subunit 11, putative, expressed"	Medtr2g103850.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.77992.1.S1_at	R	R	CF233921	CF233921	NA	NA	Q9FYP9	Importin subunit alpha-2	AT5G03070.1	importin alpha isoform 9 	LOC_Os01g06470.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.781.1.S1_at	R	R	CV274788	CV274788	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.78180.1.S1_at	R	R	CB239355	CB239355	scaffold_9:7781541-7781782(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.7845.1.A1_at	R	R	BP932679	BP932679	NA	NA	O61703	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os06g10810.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr4g152080.1	Mitochondrial substrate carrier 	NA	NA	NA
PtpAffx.78706.1.S1_at	R	R	DN496140	DN496140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.789.1.A1_at	R	R	CV273809	CV273809	NA	NA	Q54MH2	Probable vinculin	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.78996.1.A1_at	R	R	DN487719	DN487719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.79004.1.S1_at	R	R	BU874276	BU874276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.79011.1.S1_at	R	R	BU873812	BU873812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.79019.1.S1_at	R	R	DN497311	DN497311	NA	NA	Q9P844	40S ribosomal protein S21	AT3G53890.2	Ribosomal protein S21e  	LOC_Os03g22460.2	expressed protein	NA	NA	NA	NA	NA
PtpAffx.7903.2.A1_at	R	R	DN486357	DN486357	NA	NA	Q1RMS2	CTP synthase 2	AT4G20320.2	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr8g084050.1	CTP synthase 	NA	NA	NA
PtpAffx.79044.1.S1_at	R	R	DN487472	DN487472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.79158.1.S1_at	R	R	DN488807	DN488807	NA	NA	Q8L718	"ALBINO3-like protein 2, chloroplastic"	AT1G65080.1	"Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain "	LOC_Os06g07474.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g089280.1	Tetratricopeptide-like helical 	NA	NA	NA
PtpAffx.79351.1.S1_at	R	R	CK097108	CK097108	scaffold_19:153629-154167(-) (10)//scaffold_31:145638-146159(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.79380.1.S1_at	R	R	CK096572	CK096572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.79409.1.S1_at	R	R	BU820196	BU820196	NA	NA	Q9XE58	Scarecrow-like protein 14	AT1G07530.1	SCARECROW-like 14 	NA	NA	Medtr4g083880.1	GRAS transcription factor 	NA	NA	NA
PtpAffx.79435.1.S1_at	R	R	AI161599	AI161599	NA	NA	P05190	Legumin type B	AT2G28680.1	RmlC-like cupins superfamily protein 	LOC_Os05g02520.2	"cupin domain containing protein, expressed"	Medtr4g137500.1	Cupin 	NA	NA	NA
PtpAffx.7945.1.S1_at	R	R	CK094633	CK094633	NA	NA	O04235	FACT complex subunit SSRP1	AT3G28730.1	high mobility group 	LOC_Os05g08970.1	"SSRP1-like FACT complex subunit, putative, expressed"	Medtr5g089980.1	HMG1/2 (high mobility group) box; Structure-specific recognition protein 	NA	NA	NA
PtpAffx.79801.1.S1_at	R	R	CK094303	CK094303	NA	NA	P14249	40S ribosomal protein S24	AT3G04920.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr7g140510.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.80035.1.S1_at	R	R	DN493483	DN493483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80053.1.S1_at	R	R	DN502526	DN502526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80125.1.S1_at	R	R	BU838014	BU838014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80146.1.S1_at	R	R	DN489094	DN489094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80170.1.S1_at	R	R	DN497648	DN497648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80175.1.S1_at	R	R	DN487716	DN487716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80239.1.S1_at	R	R	DN495754	DN495754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80288.1.S1_at	R	R	DN484383	DN484383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80298.1.S1_at	R	R	DN493473	DN493473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80299.1.S1_at	R	R	CK115544	CK115544	NA	NA	P08144	Alpha-amylase A	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80319.1.A1_at	R	R	DN492526	DN492526	NA	NA	Q39249	"Violaxanthin de-epoxidase, chloroplastic"	AT1G08550.2	non-photochemical quenching 1 	LOC_Os04g31040.3	"violaxanthin de-epoxidase, putative, expressed"	Medtr7g143290.1	Lipocalin-related protein and Bos/Can/Equ allergen; Calycin 	NA	NA	NA
PtpAffx.80394.1.A1_at	R	R	DN488457	DN488457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80401.1.A1_at	R	R	DN488154	DN488154	NA	NA	Q9LV01	ETO1-like protein 2	AT5G58550.2	ETO1-like 2 	LOC_Os03g18360.1	"BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr7g075840.1	BTB/POZ; ; Tetratricopeptide-like helical; 	NA	NA	NA
PtpAffx.80402.1.S1_at	R	R	DN497813	DN497813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80412.1.A1_at	R	R	DN487714	DN487714	NA	NA	Q42689	"Glutamine synthetase, chloroplastic"	AT1G48470.1	glutamine synthetase 1;5 	LOC_Os03g12290.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	NA	NA	NA
PtpAffx.80413.1.A1_at	R	R	DN487624	DN487624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.80529.1.A1_at	R	R	BP936518	BP936518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8091.1.A1_at	R	R	BU888499	BU888499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.811.4.A1_at	R	R	DN490126	DN490126	NA	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	NA	NA	NA
PtpAffx.811.6.A1_at	R	R	DN490558	DN490558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.811.7.S1_at	R	R	CV273653	CV273653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81114.1.S1_at	R	R	CX185526	CX185526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8131.5.A1_a_at	R	R	BU891795	BU891795	NA	NA	P10290	Anthocyanin regulatory C1 protein	AT4G38620.1	myb domain protein 4 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	NA	NA	NA
PtpAffx.81414.1.S1_at	R	R	DN496107	DN496107	NA	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G02750.1	RING/U-box superfamily protein 	LOC_Os05g33830.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g080710.1	"Zinc finger, RING-type "	NA	NA	NA
PtpAffx.81576.1.A1_at	R	R	CV283595	CV283595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81635.1.A1_at	R	R	CV281054	CV281054	scaffold_12:1957897-1958000(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81640.1.A1_at	R	R	CV280753	CV280753	NA	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	NA	NA	Medtr4g062150.1	Chloroplast Ycf2 	NA	NA	NA
PtpAffx.81662.1.A1_at	R	R	CV279313	CV279313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81739.1.A1_at	R	R	CV275212	CV275212	NA	NA	P42620	Uncharacterized protein yqjG	AT5G45020.2	Glutathione S-transferase family protein 	LOC_Os02g21460.2	"uncharacterized protein yqjG, putative, expressed"	Medtr4g114540.2	"Intracellular chloride channel; Glutathione S-transferase, C-terminal-like "	NA	NA	NA
PtpAffx.81752.1.A1_at	R	R	CV274653	CV274653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81753.1.A1_at	R	R	CV274529	CV274529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81767.1.A1_at	R	R	CV273922	CV273922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81775.1.A1_at	R	R	CV273709	CV273709	NA	NA	Q9SZX9	60S ribosomal protein L9-2	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os09g31180.1	"ribosomal protein L6, putative, expressed"	Medtr3g122290.1	"Ribosomal protein L6, signature 2 "	NA	NA	NA
PtpAffx.8179.2.S1_at	R	R	CF236576	CF236576	NA	NA	NA	NA	AT2G27580.2	A20/AN1-like zinc finger family protein 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81792.1.A1_at	R	R	CV273214	CV273214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81793.1.A1_at	R	R	CV273194	CV273194	NA	NA	P05400	Enzymatic polyprotein	NA	NA	NA	NA	Medtr2g092830.1	"Peptidase A3A, cauliflower mosaic virus, catalytic "	NA	NA	NA
PtpAffx.81803.1.A1_at	R	R	CV272805	CV272805	NA	NA	Q8S919	Ubiquitin-conjugating enzyme E2 5B	AT5G41700.4	ubiquitin conjugating enzyme 8 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.81885.1.A1_at	R	R	CV269230	CV269230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81941.1.A1_at	R	R	CV266928	CV266928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.81993.1.A1_at	R	R	CV264929	CV264929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8201.1.A1_at	R	R	DN488250	DN488250	scaffold_18:13728599-13729038(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82039.1.A1_at	R	R	CV262857	CV262857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82119.1.A1_at	R	R	CV259805	CV259805	NA	NA	NA	NA	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g40818.1	"aspartic proteinase, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	NA	NA	NA
PtpAffx.82157.1.A1_at	R	R	CV258426	CV258426	scaffold_17:3255960-3256168(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82160.1.A1_at	R	R	CV258238	CV258238	scaffold_10:7411964-7412218(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82195.1.A1_at	R	R	CV256601	CV256601	scaffold_16:74478-75309(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82207.1.A1_at	R	R	CV256115	CV256115	scaffold_5:8365348-8365575(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82237.1.A1_at	R	R	CV254900	CV254900	scaffold_1:35724615-35725069(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82246.1.A1_at	R	R	CV254680	CV254680	NA	NA	NA	NA	AT4G38225.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g03670.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.82250.1.A1_at	R	R	CV254572	CV254572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82263.1.A1_at	R	R	CV254178	CV254178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82281.1.A1_at	R	R	CV253270	CV253270	scaffold_6:11635559-11636048(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82307.1.A1_at	R	R	CV252673	CV252673	NA	NA	P0ADC3	Lipoprotein-releasing system transmembrane protein lolC	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82368.2.A1_at	R	R	CV263031	CV263031	NA	NA	Q9FEP7	Sulfate transporter 1.3	AT1G22150.1	sulfate transporter 1;3 	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82371.1.A1_at	R	R	CV249393	CV249393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82479.1.A1_a_at	R	R	CV244862	CV244862	scaffold_8:11257689-11257999(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82502.2.S1_at	R	R	CV244129	CV244129	scaffold_9:9461417-9462220(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82592.1.A1_at	R	R	CV240998	CV240998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82724.1.A1_at	R	R	CV235203	CV235203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.82949.1.A1_at	R	R	CV226162	CV226162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8326.3.S1_at	R	R	DN487654	DN487654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.83667.1.A1_at	R	R	CV260278	CV260278	scaffold_1:9284892-9285319(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.83762.1.S1_at	R	R	DN493398	DN493398	NA	NA	P46073	24 kDa metalloproteinase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.83837.1.S1_at	R	R	DN496782	DN496782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.83904.1.S1_at	R	R	BU824599	BU824599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84144.1.A1_at	R	R	CK097435	CK097435	NA	NA	NA	NA	AT4G39250.1	RAD-like 1 	NA	NA	Medtr3g162290.1	Homeodomain-related; 	NA	NA	NA
PtpAffx.84181.1.A1_at	R	R	CK096182	CK096182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84214.1.S1_at	R	R	CK095253	CK095253	NA	NA	P34737	40S ribosomal protein S15	AT5G09500.1	Ribosomal protein S19 family protein 	LOC_Os03g58430.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	NA	NA	NA
PtpAffx.84222.1.A1_at	R	R	CK095039	CK095039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84231.1.A1_at	R	R	CK094707	CK094707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84233.1.A1_at	R	R	CK094686	CK094686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84246.1.S1_at	R	R	CX654249	CX654249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84250.1.A1_at	R	R	CK094201	CK094201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84260.1.S1_at	R	R	CK104008	CK104008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84274.1.A1_at	R	R	CK092808	CK092808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84275.1.A1_at	R	R	CK092682	CK092682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84296.1.A1_at	R	R	CK091585	CK091585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84301.1.A1_at	R	R	CK091359	CK091359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84310.1.A1_at	R	R	CK091096	CK091096	NA	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os04g57220.3	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	NA	NA	NA
PtpAffx.84334.1.A1_at	R	R	CK090271	CK090271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84341.1.A1_at	R	R	CK089590	CK089590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84342.1.A1_at	R	R	CK089532	CK089532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84357.1.A1_at	R	R	CK088403	CK088403	NA	NA	O04904	"Dihydroorotase, mitochondrial"	AT4G22930.1	pyrimidin 4 	LOC_Os01g54370.1	"dihydropyrimidinase, putative, expressed"	Medtr4g108290.1	Amidohydrolase 	NA	NA	NA
PtpAffx.84360.1.A1_at	R	R	CK087537	CK087537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84578.1.S1_at	R	R	CF229257	CF229257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.84707.1.S1_at	R	R	CA823349	CA823349	scaffold_8:4048773-4049217(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85154.1.S1_at	R	R	DN496131	DN496131	scaffold_11:5398938-5399047(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85464.1.S1_at	R	R	BU874266	BU874266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85469.1.S1_at	R	R	BU874106	BU874106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85484.1.S1_at	R	R	DN497318	DN497318	NA	NA	Q9U641	Conditioned medium factor receptor 1	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85517.1.S1_at	R	R	BU871548	BU871548	NA	NA	Q10305	Probable secretory pathway GDP dissociation inhibitor 1	AT5G09550.1	GDP dissociation inhibitor family protein / Rab GTPase activator family protein 	LOC_Os05g34540.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	NA	NA	NA
PtpAffx.85791.1.S1_at	R	R	CK097442	CK097442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85796.1.S1_at	R	R	CK097356	CK097356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85847.1.S1_at	R	R	CK106428	CK106428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.85962.1.S1_at	R	R	BU814383	BU814383	NA	NA	P34737	40S ribosomal protein S15	AT5G09500.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	NA	NA	NA
PtpAffx.861.1.A1_at	R	R	CV267999	CV267999	scaffold_5:22107265-22107692(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8610.1.S1_at	R	R	CK097470	CK097470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86224.1.S1_at	R	R	CK104623	CK104623	NA	NA	P41056	60S ribosomal protein L33-B	AT1G41880.1	Ribosomal protein L35Ae family protein 	LOC_Os05g48310.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	NA	NA	NA
PtpAffx.86253.1.S1_at	R	R	BI122825	BI122825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86458.1.A1_at	R	R	AF315118.1	AF315118.1	NA	NA	P19821	"DNA polymerase I, thermostable"	AT4G32700.2	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding 	LOC_Os12g19370.1	"DNA polymerase I family protein, expressed"	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.86458.1.S1_at	R	R	AF315118.1	AF315118.1	NA	NA	P19821	"DNA polymerase I, thermostable"	AT4G32700.2	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding 	LOC_Os12g19370.1	"DNA polymerase I family protein, expressed"	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.86465.1.S1_at	R	R	CK116032	CK116032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86468.1.S1_at	R	R	DN493432	DN493432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86481.1.S1_at	R	R	DN492755	DN492755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86585.1.S1_at	R	R	DN498306	DN498306	scaffold_5:15359156-15359606(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86649.1.S1_at	R	R	DN496138	DN496138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86677.1.S1_at	R	R	DN495022	DN495022	scaffold_10:12356684-12356773(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86721.1.A1_at	R	R	DN493309	DN493309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86722.1.A1_at	R	R	DN493290	DN493290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86739.1.A1_at	R	R	DN492386	DN492386	scaffold_3:14797094-14797503(-) (9)	NA	NA	NA	AT5G16780.1	SART-1 family 	NA	NA	Medtr1g100420.1	SART-1 protein 	NA	NA	NA
PtpAffx.86740.1.A1_at	R	R	DN492376	DN492376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86762.1.A1_at	R	R	DN491615	DN491615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86792.1.A1_at	R	R	DN490494	DN490494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86818.1.A1_at	R	R	DN488829	DN488829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86819.1.A1_at	R	R	DN488823	DN488823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86823.1.A1_at	R	R	DN488696	DN488696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86828.1.A1_at	R	R	DN488520	DN488520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86843.1.A1_at	R	R	DN487673	DN487673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86844.1.A1_at	R	R	DN487671	DN487671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86852.1.A1_at	R	R	DN487516	DN487516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8686.2.S1_at	R	R	CV273903	CV273903	NA	NA	O22769	"NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial"	AT4G02580.1	"NADH-ubiquinone oxidoreductase 24 kDa subunit, putative "	LOC_Os05g43360.1	"NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed"	Medtr2g126810.1	Thioredoxin fold 	NA	NA	NA
PtpAffx.86862.1.S1_at	R	R	CK111055	CK111055	NA	NA	Q54J26	H/ACA ribonucleoprotein complex subunit 3	AT2G20490.1	nucleolar RNA-binding Nop10p family protein 	LOC_Os02g40514.2	"h/ACA ribonucleoprotein complex subunit 3, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.86866.1.A1_at	R	R	DN486927	DN486927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86876.1.S1_at	R	R	DN486697	DN486697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86877.1.A1_at	R	R	DN486686	DN486686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86883.1.A1_at	R	R	DN486598	DN486598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86897.1.A1_at	R	R	DN486216	DN486216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86919.1.A1_at	R	R	DN485061	DN485061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.86931.1.A1_at	R	R	DN484382	DN484382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.87092.1.A1_at	R	R	BP936771	BP936771	scaffold_1:2345039-2345538(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8736.1.S1_at	R	R	CK107718	CK107718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.87526.1.S1_at	R	R	BU893569	BU893569	NA	NA	O81833	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	AT4G27300.1	S-locus lectin protein kinase family protein 	LOC_Os01g57560.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g021230.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	NA	NA	NA
PtpAffx.87800.1.S1_at	R	R	CK111574	CK111574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88109.1.A1_at	R	R	CV282117	CV282117	NA	NA	P59231	60S ribosomal protein L10a-3	AT5G22440.2	Ribosomal protein L1p/L10e family 	LOC_Os08g44450.2	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	NA	NA	NA
PtpAffx.88137.1.A1_at	R	R	CV280580	CV280580	NA	NA	O49884	60S ribosomal protein L30	AT1G77940.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	NA	NA	NA
PtpAffx.88143.1.A1_at	R	R	CV280275	CV280275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88182.1.A1_at	R	R	CV277846	CV277846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88205.1.A1_at	R	R	CV276144	CV276144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88232.1.A1_at	R	R	CV275423	CV275423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88246.1.A1_at	R	R	CV274895	CV274895	NA	NA	P36876	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88256.1.A1_at	R	R	CV274542	CV274542	NA	NA	Q9FLP6	Small ubiquitin-related modifier 2	AT5G55160.1	small ubiquitin-like modifier 2 	LOC_Os01g68950.1	"ubiquitin family domain containing protein, expressed"	AC225519_6.1	Ubiquitin; Inorganic pyrophosphatase AC225519.5 35386-39197 H EGN_Mt090430 200	NA	NA	NA
PtpAffx.88266.1.A1_at	R	R	CV274283	CV274283	NA	NA	Q9P7Q4	Vesicular-fusion protein sec18	AT4G04910.1	AAA-type ATPase family protein 	LOC_Os05g44310.1	"vesicle-fusing ATPase, putative, expressed"	AC233659_3.1	AAA ATPase AC233659.1 11110-14927 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.88277.1.A1_at	R	R	CV273806	CV273806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88280.1.A1_at	R	R	CV273759	CV273759	scaffold_5:23923191-23923524(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88282.1.A1_at	R	R	CV273670	CV273670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88284.1.A1_at	R	R	CV273588	CV273588	NA	NA	B8HUM7	Nucleoside diphosphate kinase	AT4G09320.1	Nucleoside diphosphate kinase family protein 	LOC_Os10g41410.2	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	NA	NA	NA
PtpAffx.88285.1.A1_at	R	R	CV273584	CV273584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88297.1.A1_at	R	R	CV273167	CV273167	NA	NA	Q9CAQ2	Uncharacterized protein At1g77540	AT1G77540.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	NA	NA	Medtr3g100520.1	"Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From, putative "	NA	NA	NA
PtpAffx.88299.1.A1_at	R	R	CV273016	CV273016	NA	NA	Q40061	Mugineic-acid 3-dioxygenase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os10g39140.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	NA	NA
PtpAffx.88302.1.A1_at	R	R	CV272934	CV272934	scaffold_9:7728057-7728578(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88304.1.A1_at	R	R	CV272888	CV272888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88470.1.A1_at	R	R	CV265364	CV265364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88570.1.A1_at	R	R	CV260972	CV260972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88584.1.A1_at	R	R	CV260281	CV260281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88591.1.A1_s_at	R	R	CV259964	CV259964	scaffold_4:22942249-22942296(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88624.1.A1_at	R	R	CV259077	CV259077	NA	NA	Q9SWH4	Syntaxin-42	AT4G02195.1	syntaxin of plants 42 	LOC_Os06g02570.1	"syntaxin, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.88666.1.A1_at	R	R	CV257116	CV257116	NA	NA	Q9LEH3	Peroxidase 15	AT5G06730.1	Peroxidase superfamily protein 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	Medtr7g112100.1	"Haem peroxidase, plant/fungal/bacterial "	NA	NA	NA
PtpAffx.88723.1.A1_at	R	R	CV255499	CV255499	scaffold_3:11443723-11444066(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88837.1.A1_at	R	R	CV250492	CV250492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.88914.1.A1_at	R	R	CV246653	CV246653	NA	NA	B2GEY3	ATP-dependent helicase/deoxyribonuclease subunit B	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.89012.1.A1_at	R	R	CV242178	CV242178	NA	NA	NA	NA	NA	NA	NA	NA	Medtr3g102830.1	"Photosystem II core complex proteins psbY, chloroplast precursor, putative "	NA	NA	NA
PtpAffx.891.5.S1_a_at	R	R	CK095581	CK095581	NA	NA	NA	NA	AT1G32700.1	PLATZ transcription factor family protein 	LOC_Os04g50120.1	"zinc-binding protein, putative, expressed"	Medtr8g078180.1	Protein of unknown function DUF597 	NA	NA	NA
PtpAffx.89275.2.A1_at	R	R	CV257608	CV257608	scaffold_1:26709268-26709802(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.89340.2.A1_at	R	R	DN500791	DN500791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.8975.3.A1_at	R	R	CV262521	CV262521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90019.1.S1_at	R	R	DN500062	DN500062	NA	NA	Q851R2	Protein argonaute MEL1	AT5G43810.2	Stabilizer of iron transporter SufD / Polynucleotidyl transferase 	LOC_Os03g58600.1	"PAZ domain containing protein, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	NA
PtpAffx.90287.1.S1_at	R	R	DN493345	DN493345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90464.1.S1_at	R	R	CK105904	CK105904	scaffold_2:9680047-9680313(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90474.1.S1_at	R	R	BU818976	BU818976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90517.1.S1_at	R	R	CK094483	CK094483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90518.1.S1_at	R	R	CK104433	CK104433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90526.1.S1_at	R	R	CK104045	CK104045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90540.1.S1_at	R	R	CK103368	CK103368	NA	NA	C0LGV0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	AT5G48740.1	Leucine-rich repeat protein kinase family protein 	NA	NA	AC146793_12.1	Tyrosine protein kinase; Hydroxymethylglutaryl-coenzyme A reductase AC146793.7 71906-69582 E EGN_Mt090430 200	NA	NA	NA
PtpAffx.90640.1.S1_at	R	R	AI161536	AI161536	NA	NA	Q9LF80	Putative glycosyltransferase 3	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g32750.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	NA	NA
PtpAffx.90696.1.A1_at	R	R	CK096552	CK096552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90729.1.A1_at	R	R	CK095418	CK095418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90743.1.S1_at	R	R	CK104711	CK104711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90746.1.A1_at	R	R	CK094582	CK094582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90749.1.A1_at	R	R	CK094420	CK094420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90753.2.S1_at	R	R	BI122874	BI122874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90770.1.A1_at	R	R	CK093040	CK093040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90815.1.A1_at	R	R	CK090577	CK090577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90824.1.A1_at	R	R	CK090034	CK090034	scaffold_1:26231644-26231978(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90830.1.A1_at	R	R	CK089761	CK089761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.90851.1.A1_at	R	R	CK088217	CK088217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.91108.1.S1_at	R	R	CA825894	CA825894	NA	NA	NA	NA	AT2G45690.1	shrunken seed protein (SSE1) 	LOC_Os02g03070.1	"SSE1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.91345.1.S1_at	R	R	CA929915	CA929915	NA	NA	O67716	Aspartate-semialdehyde dehydrogenase	AT1G14810.1	semialdehyde dehydrogenase family protein 	LOC_Os03g55280.1	"semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed"	Medtr4g156590.1	"Aspartate-semialdehyde dehydrogenase, microbial "	NA	NA	NA
PtpAffx.914.1.A1_at	R	R	CV263395	CV263395	NA	NA	NA	NA	AT4G15802.1	heat shock factor binding protein 	LOC_Os09g20830.2	"heat shock factor-binding protein 1, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.91532.1.S1_at	R	R	DN492453	DN492453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9162.1.S1_at	R	R	BI126776	BI126776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9167.1.S1_at	R	R	CK095286	CK095286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9176.2.S1_at	R	R	CK104896	CK104896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9194.1.S1_at	R	R	CK104784	CK104784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9201.1.S1_at	R	R	CK104646	CK104646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.921.1.A1_at	R	R	CV262759	CV262759	scaffold_15:1267326-1267517(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92122.1.S1_at	R	R	BU862529	BU862529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92231.1.S1_at	R	R	AJ776214	AJ776214	NA	NA	P48387	Chalcone synthase 2	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr3g105290.1	"Chalcone and stilbene synthases, C-terminal "	NA	NA	NA
PtpAffx.92290.1.S1_at	R	R	CK097581	CK097581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92297.1.S1_at	R	R	BU823416	BU823416	NA	NA	NA	NA	NA	NA	LOC_Os01g12210.1	"aluminum-activated malate transporter, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.92355.1.S1_at	R	R	CK106403	CK106403	scaffold_7:5569431-5570380(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92442.1.S1_at	R	R	BU808904	BU808904	NA	NA	NA	NA	AT2G19260.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g34720.2	"PHD-finger domain containing protein, putative, expressed"	Medtr3g149360.1	"ELM2 domain-containing protein, putative "	NA	NA	NA
PtpAffx.92531.1.S1_at	R	R	DN500436	DN500436	NA	NA	NA	NA	AT3G06150.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g32960.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.9265.3.S1_at	R	R	CV244325	CV244325	NA	NA	Q9SG80	Alpha-L-arabinofuranosidase 1	AT3G10740.1	alpha-L-arabinofuranosidase 1 	LOC_Os03g20420.1	"alpha-N-arabinofuranosidase A, putative, expressed"	Medtr7g105210.1	"alpha-L-arabinofuranosidase protein, putative "	NA	NA	NA
PtpAffx.92684.1.S1_at	R	R	CK095313	CK095313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92715.1.S1_at	R	R	BI124845	BI124845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92717.1.S1_at	R	R	CK094586	CK094586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92772.2.S1_at	R	R	DN495937	DN495937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.92908.1.S1_at	R	R	CK097943	CK097943	NA	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g56050.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	NA	NA	NA
PtpAffx.93054.1.S1_at	R	R	DN500680	DN500680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93130.2.S1_a_at	R	R	CF936861	CF936861	scaffold_14:4389735-4390147(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93141.1.S1_at	R	R	DN487041	DN487041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93167.1.S1_at	R	R	DN496018	DN496018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93217.1.A1_at	R	R	DN484812	DN484812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93236.1.S1_at	R	R	DN493452	DN493452	NA	NA	O55096	Dipeptidyl peptidase 3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9325.1.A1_at	R	R	CV268992	CV268992	scaffold_3:7792811-7793135(+) (11)	NA	Q1SF86	Ubiquitin-like protein ATG12	AT1G54210.1	Ubiquitin-like superfamily protein 	LOC_Os06g10340.1	"autophagy-related protein 12, putative, expressed"	Medtr8g024660.1	Autophagy protein Apg12 	NA	NA	NA
PtpAffx.93312.1.A1_at	R	R	DN490508	DN490508	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93314.1.A1_at	R	R	DN490473	DN490473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93318.1.A1_at	R	R	DN490395	DN490395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93345.1.A1_at	R	R	DN488832	DN488832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93360.1.A1_at	R	R	DN487659	DN487659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93376.1.A1_at	R	R	DN487092	DN487092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93382.1.A1_at	R	R	DN486973	DN486973	NA	NA	NA	NA	AT1G56260.1	unknown protein; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	NA	NA	Medtr7g138330.1	hypothetical protein 	NA	NA	NA
PtpAffx.93393.1.S1_at	R	R	DN486653	DN486653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93395.1.A1_at	R	R	DN486617	DN486617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93441.1.A1_at	R	R	DN484547	DN484547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93442.1.A1_at	R	R	DN484520	DN484520	NA	NA	P37211	"ATP synthase subunit alpha, mitochondrial"	ATMG01190.1	ATP synthase subunit 1 	LOC_Os09g08910.1	"ATP synthase, putative, expressed"	Medtr1g006540.1	ATPase FliI/YscN 	NA	NA	NA
PtpAffx.93471.1.A1_at	R	R	BP936858	BP936858	NA	NA	P17507	"Elongation factor 1-alpha, oocyte form"	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08060.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	NA	NA
PtpAffx.93512.1.A1_at	R	R	BP935014	BP935014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93539.1.A1_at	R	R	BP933651	BP933651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93567.1.A1_at	R	R	BP932636	BP932636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.93628.1.A1_at	R	R	BP930043	BP930043	scaffold_8:15853627-15854123(+) (9)	NA	P04146	Copia protein	NA	NA	LOC_Os12g40050.1	"retrotransposon protein, putative, unclassified"	Medtr5g086550.1	"Reverse transcriptase, RNA-dependent DNA polymerase "	NA	NA	NA
PtpAffx.93809.1.S1_at	R	R	CX187012	CX187012	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94059.1.S1_at	R	R	CX168152	CX168152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94296.1.S1_at	R	R	CN522470	CN522470	NA	NA	Q84UV8	Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3	AT4G21000.1	alpha carbonic anhydrase 6 	LOC_Os08g36630.1	"bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed"	Medtr7g108160.1	"Carbonic anhydrase, eukaryotic "	NA	NA	NA
PtpAffx.9434.1.S1_at	R	R	DN493501	DN493501	NA	NA	P0C2I0	60S ribosomal protein L20	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os01g54870.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	NA	NA	NA
PtpAffx.9435.1.S1_at	R	R	DN503461	DN503461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9452.1.S1_at	R	R	DN492692	DN492692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94560.1.A1_at	R	R	CV282512	CV282512	NA	NA	NA	NA	NA	NA	LOC_Os02g40514.2	"h/ACA ribonucleoprotein complex subunit 3, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.94569.1.A1_at	R	R	CV282021	CV282021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94630.1.A1_at	R	R	CV278742	CV278742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94680.1.A1_at	R	R	CV275736	CV275736	NA	NA	Q26636	Cathepsin L	AT5G60360.1	aleurain-like protease 	LOC_Os09g27030.2	"oryzain gamma chain precursor, putative, expressed"	Medtr5g022460.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	NA	NA	NA
PtpAffx.94683.1.A1_at	R	R	CV275605	CV275605	NA	NA	P11670	Basic form of pathogenesis-related protein 1	AT2G14610.1	pathogenesis-related gene 1 	LOC_Os10g11500.1	"SCP-like extracellular protein, expressed"	Medtr2g010660.1	Allergen V5/Tpx-1 related 	NA	NA	NA
PtpAffx.94684.1.A1_at	R	R	CV275582	CV275582	NA	NA	Q3MHM7	60S ribosomal protein L35	AT5G02610.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	NA	NA	NA
PtpAffx.94698.1.A1_at	R	R	CV275048	CV275048	NA	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	NA	NA	NA
PtpAffx.94700.1.A1_at	R	R	CV275220	CV275220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94706.1.A1_at	R	R	CV274800	CV274800	NA	NA	Q6GMH0	Pre-mRNA-splicing factor 18	AT1G03140.1	splicing factor Prp18 family protein 	LOC_Os03g49430.1	"pre-mRNA-splicing factor, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.94712.1.A1_at	R	R	CV274586	CV274586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94724.1.A1_at	R	R	CV274201	CV274201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94727.1.A1_at	R	R	CV274161	CV274161	NA	NA	P05747	60S ribosomal protein L29	AT3G06700.3	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g138040.1	Ribosomal L29e protein 	NA	NA	NA
PtpAffx.94735.1.A1_at	R	R	CV273818	CV273818	NA	NA	O54161	Alpha-L-arabinofuranosidase	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94742.1.A1_at	R	R	CV273710	CV273710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94757.1.A1_at	R	R	CV272910	CV272910	scaffold_8:2252764-2253075(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94784.1.A1_at	R	R	CV271800	CV271800	NA	NA	Q9LYV6	GEM-like protein 5	AT5G13200.1	GRAM domain family protein 	LOC_Os12g29400.1	"GRAM domain containing protein, expressed"	Medtr7g096590.1	GRAM 	NA	NA	NA
PtpAffx.94795.1.A1_at	R	R	CV271276	CV271276	scaffold_2:12150830-12151320(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94880.1.A1_at	R	R	CV267822	CV267822	NA	NA	NA	NA	AT1G24430.1	HXXXD-type acyl-transferase family protein 	NA	NA	Medtr3g103100.1	Transferase 	NA	NA	NA
PtpAffx.94908.1.A1_at	R	R	CV267058	CV267058	scaffold_2:6376587-6377011(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.94932.1.A1_at	R	R	CV266150	CV266150	scaffold_12:14629898-14631584(-) (11)	NA	P21238	"RuBisCO large subunit-binding protein subunit alpha, chloroplastic"	AT5G18820.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g64210.3	"T-complex protein, putative, expressed"	Medtr4g114440.2	"GroEL-like chaperone, ATPase "	NA	NA	NA
PtpAffx.95.1.S1_at	R	R	DN486694	DN486694	scaffold_13:14890211-14890692(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95016.1.A1_at	R	R	CV263339	CV263339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95082.1.A1_at	R	R	CV259402	CV259402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95151.1.A1_at	R	R	CV257952	CV257952	scaffold_10:6210151-6210690(-) (11)//scaffold_216:25612-26150(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95154.1.A1_at	R	R	CV257869	CV257869	scaffold_3:13980719-13981071(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95180.1.S1_at	R	R	CA824276	CA824276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95187.1.A1_at	R	R	CV256912	CV256912	scaffold_10:13075652-13076040(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95247.1.A1_at	R	R	CV255118	CV255118	scaffold_1:47332276-47332419(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95264.1.A1_at	R	R	CV254658	CV254658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95276.1.A1_at	R	R	CV254214	CV254214	scaffold_2:7569358-7569475(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95281.1.A1_at	R	R	CV254077	CV254077	scaffold_1:26706628-26707103(-) (11)//scaffold_2:17872842-17873222(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95373.1.A1_at	R	R	CV249505	CV249505	NA	NA	Q9SC12	Eukaryotic translation initiation factor 5A	AT1G69410.1	eukaryotic elongation factor 5A-3 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr5g045930.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	NA	NA	NA
PtpAffx.95404.1.A1_at	R	R	CV247625	CV247625	scaffold_6:10452976-10453366(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95421.1.A1_at	R	R	CV246658	CV246658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95479.1.A1_at	R	R	CV244438	CV244438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95492.2.A1_at	R	R	CV276685	CV276685	NA	NA	NA	NA	NA	NA	LOC_Os12g40530.1	"transposon protein, putative, unclassified, expressed"	Medtr7g143350.1	"Plant MuDR transposase; Zinc finger, SWIM-type "	NA	NA	NA
PtpAffx.9556.1.S1_at	R	R	DN489078	DN489078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9581.1.S1_at	R	R	DN487726	DN487726	NA	NA	B0FWD1	Cytochrome c oxidase subunit 3	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9584.1.S1_at	R	R	BU873535	BU873535	NA	NA	O59921	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming]"	AT1G78580.1	trehalose-6-phosphate synthase 	LOC_Os05g44210.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g136440.1	"Glycosyl transferase, family 20 "	NA	NA	NA
PtpAffx.95842.1.A1_at	R	R	CV230774	CV230774	NA	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29150.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.9585.1.S1_at	R	R	DN497325	DN497325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.95904.1.A1_at	R	R	CV228473	CV228473	NA	NA	P48504	Cytochrome b-c1 complex subunit 6	AT1G15120.1	Ubiquinol-cytochrome C reductase hinge protein 	LOC_Os11g06340.2	"ubiquinol-cytochrome C reductase hinge protein, putative, expressed"	Medtr2g008190.1	Ubiquinol-cytochrome C reductase hinge protein 	NA	NA	NA
PtpAffx.9595.1.S1_at	R	R	DN497095	DN497095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9601.1.S1_at	R	R	DN487196	DN487196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9604.1.S1_at	R	R	DN487082	DN487082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9607.1.S1_at	R	R	DN487060	DN487060	NA	NA	P13352	"Photosystem I reaction center subunit VI, chloroplastic"	AT1G52230.1	photosystem I subunit H2 	LOC_Os05g48630.2	expressed protein	Medtr2g122810.1	Photosystem I reaction centre subunit VI 	NA	NA	NA
PtpAffx.9621.1.S1_at	R	R	DN496364	DN496364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9623.4.A1_at	R	R	BP935433	BP935433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9636.1.S1_at	R	R	DN495945	DN495945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9641.1.S1_at	R	R	DN495772	DN495772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.96791.1.S1_at	R	R	DN493514	DN493514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.96792.1.S1_at	R	R	DN493499	DN493499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9689.1.S1_at	R	R	DN493419	DN493419	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.96896.1.S1_at	R	R	DN494112	DN494112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.96909.1.S1_at	R	R	CK095101	CK095101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9692.1.S1_at	R	R	DN493370	DN493370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.96929.1.S1_at	R	R	CK107631	CK107631	NA	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT4G30520.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g16330.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr8g144660.1	Tyrosine protein kinase 	NA	NA	NA
PtpAffx.96942.1.S1_at	R	R	CK107034	CK107034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9696.1.A1_at	R	R	DN493292	DN493292	NA	NA	NA	NA	AT1G15910.1	XH/XS domain-containing protein 	NA	NA	Medtr8g145980.1	"Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger "	NA	NA	NA
PtpAffx.97015.1.S1_at	R	R	CK094376	CK094376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9702.1.A1_at	R	R	DN492982	DN492982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97025.1.S1_at	R	R	CK104066	CK104066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97166.1.A1_at	R	R	CK096953	CK096953	NA	NA	NA	NA	AT1G73010.1	phosphate starvation-induced gene 2 	LOC_Os01g52230.1	"phosphoethanolamine/phosphocholine phosphatase, putative, expressed"	Medtr2g080200.1	"HAD-superfamily subfamily IB hydrolase, hypothetical 1 "	NA	NA	NA
PtpAffx.97168.1.A1_at	R	R	CK096823	CK096823	NA	NA	Q94A76	Potassium channel GORK	AT5G37500.1	gated outwardly-rectifying K+ channel 	LOC_Os06g14030.1	"potassium channel SKOR, putative, expressed"	Medtr5g085560.1	Ankyrin 	NA	NA	NA
PtpAffx.97171.1.A1_at	R	R	CK096704	CK096704	NA	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.2	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g12450.1	"receptor-like protein kinase 2 precursor, putative"	Medtr3g123040.1	Protein kinase 	NA	NA	NA
PtpAffx.97217.1.A1_at	R	R	CK095426	CK095426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97218.1.A1_at	R	R	CK095402	CK095402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97232.1.S1_at	R	R	CK104952	CK104952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97238.1.S1_at	R	R	BI124554	BI124554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97240.1.A1_at	R	R	CK094595	CK094595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97247.1.A1_at	R	R	CK094322	CK094322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97251.1.A1_at	R	R	CK094114	CK094114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97255.1.S1_at	R	R	CK094016	CK094016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97257.1.A1_at	R	R	CK093972	CK093972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97260.1.A1_at	R	R	CK093276	CK093276	NA	NA	P11139	Tubulin alpha-1 chain	AT1G64740.1	alpha-1 tubulin 	NA	NA	Medtr3g127910.1	Cell division protein FtsZ 	NA	NA	NA
PtpAffx.97265.1.A1_at	R	R	CK092911	CK092911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9732.1.S1_at	R	R	DN501871	DN501871	scaffold_1:1800788-1802193(+) (10)//scaffold_1:7563510-7565197(-) (10)//scaffold_12:1666965-1668542(-) (10)//scaffold_14:16418693-16420325(-) (10)//scaffold_16:13401917-13403554(-) (10)//scaffold_2:16683056-16684650(+) (9)//scaffold_282:15029-16575(+) (10)//scaffold_888:4769-6488(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97330.1.A1_at	R	R	CK090046	CK090046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97335.1.A1_at	R	R	CK089888	CK089888	NA	NA	Q9SAR5	Ankyrin repeat domain-containing protein 2	AT4G35450.5	ankyrin repeat-containing protein 2 	LOC_Os03g63480.1	"ankyrin repeat domain containing protein, expressed"	NA	NA	NA	NA	NA
PtpAffx.97337.1.A1_at	R	R	CK089747	CK089747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97344.1.A1_at	R	R	CK088701	CK088701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97515.1.S1_at	R	R	CF231026	CF231026	NA	NA	Q7F0R1	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase	AT5G49570.1	peptide-N-glycanase 1 	LOC_Os07g31460.2	"peptide-Nasparagine amidase, putative, expressed"	Medtr7g140800.1	Transglutaminase-like 	NA	NA	NA
PtpAffx.9752.1.A1_at	R	R	DN491443	DN491443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9775.1.A1_at	R	R	DN490815	DN490815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9779.1.A1_at	R	R	DN490442	DN490442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9782.1.A1_at	R	R	DN490342	DN490342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.97994.1.S1_at	R	R	CX184253	CX184253	NA	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT4G36960.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g71770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g017210.1	"Nucleotide-binding, alpha-beta plait "	NA	NA	NA
PtpAffx.9806.1.A1_at	R	R	DN489106	DN489106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9806.2.A1_a_at	R	R	CV255306	CV255306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9806.2.A1_at	R	R	CV255306	CV255306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9809.1.A1_at	R	R	DN488972	DN488972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98110.1.A1_at	R	R	DN486925	DN486925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98164.1.S1_at	R	R	DN496036	DN496036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9827.1.A1_at	R	R	DN487750	DN487750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9832.1.S1_at	R	R	DN497313	DN497313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9836.1.S1_at	R	R	DN497103	DN497103	NA	NA	O74803	UV excision repair protein rhp23	AT5G38470.1	Rad23 UV excision repair protein family 	LOC_Os06g15360.3	"RAD23 DNA repair protein, putative, expressed"	NA	NA	NA	NA	NA
PtpAffx.9846.1.S1_at	R	R	DN496715	DN496715	NA	NA	Q92249	Protein disulfide-isomerase erp38	AT2G47470.4	thioredoxin family protein 	LOC_Os05g06430.2	"OsPDIL2-1  protein disulfide isomerase PDIL2-1, expressed"	Medtr1g107440.1	"Thioredoxin-related; Thioredoxin domain 2; Endoplasmic reticulum ERp29, C-terminal; "	NA	NA	NA
PtpAffx.9846.2.A1_at	R	R	DN487110	DN487110	NA	NA	Q00216	Protein disulfide-isomerase tigA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98482.1.S1_at	R	R	BU872362	BU872362	NA	NA	Q4A054	Uncharacterized oxidoreductase SSP0419	AT5G10050.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os12g43740.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr8g102040.1	Short-chain dehydrogenase/reductase SDR 	NA	NA	NA
PtpAffx.9849.1.S1_at	R	R	BU893598	BU893598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98516.1.S1_at	R	R	DN487107	DN487107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9854.1.S1_at	R	R	DN496413	DN496413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9857.1.A1_at	R	R	BU891895	BU891895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9859.1.A1_at	R	R	DN486655	DN486655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98594.1.S1_at	R	R	BU865582	BU865582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98678.1.S1_at	R	R	DN499163	DN499163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9868.1.S1_at	R	R	DN486485	DN486485	NA	NA	NA	NA	AT3G16565.2	"alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding "	LOC_Os01g03030.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr8g138800.1	"Alanyl-tRNA synthetase, class IIc "	NA	NA	NA
PtpAffx.9869.1.S1_at	R	R	DN496019	DN496019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9869.2.S1_at	R	R	CV277567	CV277567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9875.1.S1_at	R	R	DN495813	DN495813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9879.1.A1_at	R	R	DN486157	DN486157	NA	NA	P93312	Uncharacterized tatC-like protein ymf16	ATMG00570.1	Sec-independent periplasmic protein translocase 	LOC_Os12g33962.1	"uncharacterized tatC-like protein ymf16, putative, expressed"	Medtr1g108640.1	Sec-independent periplasmic protein translocase 	NA	NA	NA
PtpAffx.98833.1.S1_at	R	R	CK096499	CK096499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9884.1.A1_at	R	R	DN485813	DN485813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98848.1.S1_at	R	R	BU820317	BU820317	scaffold_13:14547182-14547631(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9885.1.A1_at	R	R	DN485795	DN485795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9887.2.S1_at	R	R	CV244429	CV244429	NA	NA	Q8QZR1	Tyrosine aminotransferase	AT5G36160.1	Tyrosine transaminase family protein 	LOC_Os11g35040.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	NA	NA	NA
PtpAffx.9892.1.S1_at	R	R	DN494753	DN494753	scaffold_16:12934035-12939057(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98960.1.S1_at	R	R	CF231876	CF231876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.98965.1.S1_at	R	R	DN486227	DN486227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9905.1.A1_at	R	R	DN484886	DN484886	NA	NA	NA	NA	AT2G20740.1	Tetraspanin family protein 	LOC_Os04g58330.1	expressed protein	NA	NA	NA	NA	NA
PtpAffx.9911.2.A1_at	R	R	CV282416	CV282416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99111.1.A1_at	R	R	BI132075	BI132075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.9914.1.S1_at	R	R	DN493977	DN493977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99193.1.S1_at	R	R	CK104778	CK104778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99482.1.A1_at	R	R	DN492299	DN492299	scaffold_60:29030-29339(-) (9)//scaffold_60:48831-64180(-) (10)//scaffold_60:100923-101223(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99595.1.S1_at	R	R	DN487760	DN487760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99605.1.S1_at	R	R	DN497235	DN497235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99630.1.S1_at	R	R	CV255571	CV255571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99689.1.S1_at	R	R	DN484603	DN484603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99692.1.A1_at	R	R	AJ490335.1	AJ490335.1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99692.1.S1_at	R	R	BI124771	BI124771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99694.1.S1_at	R	R	BU898050	BU898050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99700.1.S1_at	R	R	DN503429	DN503429	NA	NA	NA	NA	AT5G42500.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g27620.1	"dirigent, putative"	Medtr7g076490.1	Plant disease resistance response protein 	NA	NA	NA
PtpAffx.99704.1.A1_at	R	R	DN493196	DN493196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99708.1.A1_a_at	R	R	DN492914	DN492914	NA	NA	Q8RXR2	Chloride channel protein CLC-f	AT1G55620.2	chloride channel F 	LOC_Os08g38980.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr5g106870.1	"CBS; Cl- channel, voltage gated "	NA	NA	NA
PtpAffx.99728.2.A1_at	R	R	BP933722	BP933722	NA	NA	NA	NA	AT2G23790.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.3	Protein of unknown function DUF607 	NA	NA	NA
PtpAffx.99748.1.A1_at	R	R	DN491439	DN491439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99775.1.A1_at	R	R	DN490527	DN490527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99803.1.A1_at	R	R	DN488771	DN488771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99805.1.A1_at	R	R	DN488740	DN488740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
PtpAffx.99832.1.A1_at	R	R	DN487554	DN487554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA